# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             peptides/protein_motifs.faa
# target HMM database:             /home/analysis/reflibs/hmmer3/tigrfams/12.0/tigrfams.hmm
# output directed to file:         tigr/tigrfam.hits
# per-seq hits tabular output:     tigr/tigrfam.hits.tbl
# prefer accessions over names:    yes
# max ASCII text line length:      unlimited
# number of worker threads:        4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MMETSP1174-20130828|1_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.2   0.0      0.027   11.0   0.0    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.7e-06     0.027     375     398 .]       2      25 ..       1      25 [. 0.95

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.7e-06
  TIGR02028 375 krvapaepledlkllvktigslvr 398
                krv   +p+ed+kll +tigsl+r
    MMETSP1174-20130828|1_1   2 KRVQGNSPIEDIKLLGNTIGSLIR 25 
                89999*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.42s 00:00:00.59 Elapsed: 00:00:11.90
# Mc/sec: 5.10
//
Query:       MMETSP1174-20130828|2_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-08   30.1   0.0    8.6e-08   29.8   0.0    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    8.9e-08   29.0   0.0    9.2e-08   28.9   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    9.7e-08   29.2   0.0    9.7e-08   29.2   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.2e-07   28.6   0.0    1.2e-07   28.6   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    1.6e-07   28.1   0.0    1.6e-07   28.1   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.6e-07   27.8   0.0      2e-07   27.5   0.0    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.7e-07   26.9   0.0    5.7e-07   26.9   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      1e-06   26.2   0.0    1.2e-06   26.0   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.5e-06   25.5   0.0    2.3e-06   24.9   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.4e-06   24.6   0.0    2.5e-06   24.5   0.0    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
    4.9e-06   24.0   0.0    5.4e-06   23.8   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      5e-06   23.6   0.0    7.4e-06   23.1   0.0    1.3  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.8e-06   23.6   0.0    6.6e-06   23.4   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.4e-06   23.5   0.0    7.8e-06   23.4   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    9.2e-06   22.9   0.0    9.2e-06   22.9   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    9.9e-06   23.0   0.0    1.3e-05   22.7   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.5e-05   22.4   0.0    1.7e-05   22.2   0.0    1.1  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.3e-05   21.7   0.0    2.4e-05   21.6   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.5e-05   20.9   0.0    2.6e-05   20.9   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.6e-05   20.7   0.0    2.7e-05   20.6   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.7e-05   20.5   0.0    2.7e-05   20.5   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.6e-05   21.4   0.0      4e-05   21.2   0.0    1.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.2e-05   21.1   0.0    4.6e-05   21.0   0.0    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.3e-05   20.6   0.0    6.9e-05   20.5   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.4e-05   20.1   0.0      9e-05   19.9   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    8.4e-05   20.2   0.0    9.1e-05   20.0   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.5e-05   19.9   0.0    0.00014   19.2   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.3e-05   18.9   0.0    9.3e-05   18.9   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    0.00022   18.9   0.0    0.00023   18.8   0.0    1.2  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    0.00029   18.3   0.0    0.00033   18.2   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    0.00033   17.8   0.0    0.00037   17.6   0.0    1.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    0.00043   16.9   0.0    0.00043   16.9   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    0.00077   15.9   0.0    0.00098   15.5   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    0.00083   15.5   0.0    0.00083   15.5   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
     0.0016   15.8   0.0     0.0017   15.7   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
     0.0017   15.9   0.0     0.0018   15.8   0.0    1.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
     0.0021   14.5   0.0     0.0033   13.8   0.0    1.3  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
     0.0025   15.1   0.0     0.0034   14.7   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
     0.0032   13.5   0.0     0.0036   13.4   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
     0.0056   14.0   0.0     0.0056   14.0   0.0    1.2  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0082   10.8   0.0     0.0085   10.7   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
     0.0093   12.8   0.0     0.0094   12.8   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
       0.01   12.7   0.0       0.01   12.7   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      0.011   12.1   0.0      0.012   12.0   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      0.014   12.9   0.0      0.017   12.5   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      0.017   12.4   0.0      0.019   12.2   0.0    1.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
      0.033   11.4   0.0      0.039   11.1   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD


Domain annotation for each model (and alignments):
>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.9e-10   8.6e-08     121     176 ..      39      96 ..       9     101 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 9.9e-10
  TIGR02982 121 kaeelleavgleerldykp..edlsgGqkqrvaiaralvarPklvladePtaaldkks 176
                  +  l   gle ++  +   + lsgGqk +v +  ++ + P+l++ dePt  ld++s
    MMETSP1174-20130828|2_1  39 GIQTHLDRFGLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                34567888999999887652269********************************998 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.1e-09   9.2e-08     157     197 ..      57      97 ..       5     102 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.1e-09
  TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesv 197
                 k++ lsGG+k +v +   + + P ll+ldePtn+ld es+
    MMETSP1174-20130828|2_1  57 GKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                47899**********************************97 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.1e-09   9.7e-08     437     497 ..      40     100 ..      14     103 .] 0.76

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.1e-09
  TIGR02857 437 ldelvkalpqgleteiGerg..agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaev 497
                +++ ++    gle e G  g  agLSgGq+ ++ +   + +  +ll+lDEPt  LD+e+  ++
    MMETSP1174-20130828|2_1  40 IQTHLDRF--GLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLGAM 100
                44444433..78888888874469*********************************986555 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.3e-09   1.2e-07     158     199 ..      53      94 ..      13     101 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.3e-09
  TIGR00955 158 igvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDs 199
                 g+ g++ glSgG++ ++ ++s + ++P+lL++DEPT  LD 
    MMETSP1174-20130828|2_1  53 FGTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                57889999********************************95 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.8e-09   1.6e-07     443     495 ..      48     102 ..      12     103 .] 0.84

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.8e-09
  TIGR01842 443 GYdteigegG..aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalak 495
                G ++e g+ G  a+LsgGq+ ++ +   ++  P+l+vLDeP   LD e   a+a+
    MMETSP1174-20130828|2_1  48 GLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLGAMAA 102
                77788888884458********************************998777766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.3e-09     2e-07     591     638 ..      47      96 ..      14     102 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.3e-09
  TIGR03375 591 kGldlqigerG..esLSgGQrqavalaRallkdppillLDEPtsalDnss 638
                 Gl+   g  G  ++LSgGQ+  v++   + + p++l+LDEPt+ lD++s
    MMETSP1174-20130828|2_1  47 FGLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                456666666552258********************************987 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   6.5e-09   5.7e-07     134     170 ..      58      94 ..      21     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 6.5e-09
  TIGR03873 134 dlstlsGGerqrvhlaralaqePklllldePtnhldv 170
                ++  lsGG++ +v +  ++   P+ll+ldePtn+ld 
    MMETSP1174-20130828|2_1  58 KIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                5678*******************************94 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.3e-08   1.2e-06     107     169 ..      34      98 ..      23     103 .] 0.86

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.3e-08
  TIGR03864 107 aeaeerieealarlglaeraee..kvreLnGGhrrrveiarallhePklLLlDeatvGLDiesra 169
                + ++  i+++l+r+gl++   +  k+  L+GG++ +v +  ++   P+lL+lDe+t  LD es  
    MMETSP1174-20130828|2_1  34 KLTTGGIQTHLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLG 98 
                556677999*******998654339***********************************99865 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.6e-08   2.3e-06     120     159 ..      57      96 ..      30     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.6e-08
  TIGR01188 120 kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprt 159
                 k+  +sgG++ ++ ++ s+ + P++l LDEPt  LD ++
    MMETSP1174-20130828|2_1  57 GKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                478899*******************************876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.9e-08   2.5e-06     130     168 ..      56      94 ..      17      99 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.9e-08
  TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldp 168
                  ++a lsgg k ++ + +++ n p+ll+ldept  ld 
    MMETSP1174-20130828|2_1  56 YGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                3589*******************************9996 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.2e-08   5.4e-06     128     180 ..      42      96 ..      10     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.2e-08
  TIGR02315 128 elLervglael..aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpks 180
                + L+r+gl++    + +   LsGGq+ +v +  ++ + p+l++ DEP+  LD +s
    MMETSP1174-20130828|2_1  42 THLDRFGLEAEfgTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                5799999988633578999*********************************876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.5e-08   7.4e-06      96     134 ..      57      95 ..      40     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.5e-08
  TIGR01187  96 rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkk 134
                 k+  lsGGq+ +v +  ++ + P++L+lDep   LD++
    MMETSP1174-20130828|2_1  57 GKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                47899********************************96 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.5e-08   6.6e-06     110     166 ..      35      93 ..      21      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.5e-08
  TIGR03265 110 evaerveelLelvglsgseekyP..gqlsGGqqqrvaLaralalsPglLLLDePlsaLD 166
                 ++  +++ L+  gl+     y   + lsGGq+ +v ++ ++   P+lL+LDeP   LD
    MMETSP1174-20130828|2_1  35 LTTGGIQTHLDRFGLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLD 93 
                455568888999999988888863368***************************99999 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.9e-08   7.8e-06     110     169 ..      36      97 ..      12     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.9e-08
  TIGR03522 110 lkkrveelielvGlkae..qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnql 169
                    ++  +++ Gl+ae  ++ ki+ ls G + +v +  ++   P++l+ldePt  ld + l
    MMETSP1174-20130828|2_1  36 TTGGIQTHLDRFGLEAEfgTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                4556889999****9996679************************************98765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     1e-07   9.2e-06     130     165 ..      60      95 ..      18      99 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1e-07
  TIGR02142 130 gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDek 165
                + LsGG k +v +g  +   P+LL++DeP   LD++
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                67********************************86 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-07   1.3e-05     125     176 ..      43      96 ..      18     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.5e-07
  TIGR02211 125 llekvglekrink..kpselsGGerqrvaiaralvnkPklvladePtgnldkkt 176
                 l+++gle       k + lsGG++ +v +  ++ n P+l++ dePt  ld+++
    MMETSP1174-20130828|2_1  43 HLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                5777777777655125689********************************986 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     2e-07   1.7e-05     114     169 ..      39      96 ..      12     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2e-07
  TIGR03608 114 kkkevlekvglekklkk..kiyelsgGekqRvalarillkeselilADEPtgsLDkkn 169
                 ++++l+++gle++  +  ki  lsgG+k +v +   +   ++l++ DEPt  LD+++
    MMETSP1174-20130828|2_1  39 GIQTHLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                46788999999776543228***********************************986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.7e-07   2.4e-05     142     180 ..      59      97 ..      11     102 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.7e-07
  TIGR00972 142 alsLsGGqqqrlciaralavePevlLlDePtsaLDpiat 180
                  +LsGGq+ ++++  ++   P++l+lDePt  LD ++ 
    MMETSP1174-20130828|2_1  59 IAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                468********************************8775 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     3e-07   2.6e-05     446     509 ..      36      99 ..      21     103 .] 0.84

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3e-07
  TIGR02868 446 ervgLadwlraLpdGldtklgeggar..lSGGerqRlalARaLladapvllLDEPtehLDaeteee 509
                   g++ +l++   Gl+++ g+ g+   lSGG++ ++++   + +   +l+LDEPt  LD e   +
    MMETSP1174-20130828|2_1  36 TTGGIQTHLDR--FGLEAEFGTYGKIagLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLGA 99 
                55566777777..799999999996444********************************987555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.1e-07   2.7e-05     380     435 ..      37      93 ..      12     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.1e-07
  TIGR02633 380 lkaieeeikrlkvktas.pdlpiarlsGGnqqkavlakllllnprvlildeptrGvd 435
                   i+++++r+ + +    +  ia+lsGG++ k v+   +   p++l+ldept  +d
    MMETSP1174-20130828|2_1  37 TGGIQTHLDRFGLEAEFgTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLD 93 
                4568888888888875415668*******************************9877 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.1e-07   2.7e-05     582     628 ..      48      96 ..      18     102 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.1e-07
  TIGR01846 582 GyetevgekG..aalsGGqrqrialaralvanPrilildeatsaldyes 628
                G e e g  G  a lsGGq+ ++ +  ++ + P++l+lde t  ld es
    MMETSP1174-20130828|2_1  48 GLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                55666655443379*********************************99 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.6e-07     4e-05      98     167 ..      27     101 ..       8     103 .] 0.75

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.6e-07
  TIGR01189  98 aallqseqk...tveealekvgLsgledl..pvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvella 167
                ++++++ ++    +++ l++ gL++   +   +a Ls Gqk ++ ++  + +   l +LDEPt  lD+e+   +a
    MMETSP1174-20130828|2_1  27 NSIVSQRKLttgGIQTHLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLGAMA 101
                55555444333357888888898876443126899*********************************9987665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.2e-07   4.6e-05     117     171 ..      39      95 ..      13     101 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.2e-07
  TIGR02673 117 rveevlelvgledkakalpe..elsgGeqqRvaiaRaivnkPelllaDePtGnlDde 171
                 +++ l+  gle    ++ +   lsgG + +v +  ++ n P+ll+ DePt  lD e
    MMETSP1174-20130828|2_1  39 GIQTHLDRFGLEAEFGTYGKiaGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                56778888888888877654227********************************86 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.9e-07   6.9e-05     119     173 ..      40      96 ..      10     101 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.9e-07
  TIGR00960 119 vsaalekvGlkdkakalP..vqlsgGeqqrvaiaravvnkPallladePtgnlddel 173
                +++ l++ Gl+    ++     lsgG++ +v +  ++ n P+ll+ dePt  ld+e 
    MMETSP1174-20130828|2_1  40 IQTHLDRFGLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                5677888888887655441167********************************984 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     1e-06     9e-05     131     160 ..      61      90 ..      21      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1e-06
  TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePte 160
                 LsGGq+ ++ ++ ++   P+ll+LDePt+
    MMETSP1174-20130828|2_1  61 GLSGGQKVKVVMGSSMWNCPHLLVLDEPTN 90 
                59**************************96 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-06   9.1e-05      98     157 ..      33      94 ..      11     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1e-06
  TIGR03740  98 lglpesrieevlkivdlentekk..kakqfslGmkqrlGiaiallnkPkllildePtnGldP 157
                ++l +  i+  l+  +le +     k   +s G k ++ +  ++ n P+ll+ldePtn ld 
    MMETSP1174-20130828|2_1  33 RKLTTGGIQTHLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                56677778888888888776543126778899999999999*******************95 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.7e-06   0.00014     126     167 ..      60     101 ..      50     103 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.7e-06
  TIGR01166 126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqll 167
                  lsgG+k +v + + +   p++l+ldePt  ld +    ++
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLGAMA 101
                569*******************************98876665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-06   9.3e-05     459     506 ..      48      97 ..      13     103 .] 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.1e-06
  TIGR02203 459 GldtevGeng..skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDnese 506
                Gl+ e G+ g  + LsGGq+ ++ +  ++     +L+LDe t  LD es 
    MMETSP1174-20130828|2_1  48 GLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                88888888773368***************99999**************96 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-06   0.00023     110     148 ..      58      96 ..      29     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.6e-06
  TIGR03771 110 pvGelsGGqrqrvlvaralavkpslllldepftGldlps 148
                 +  lsGGq+ +v++  ++   p+ll+ldep   ld  s
    MMETSP1174-20130828|2_1  58 KIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                5788***************************99999766 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.8e-06   0.00033      95     146 ..      40      93 ..       8     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.8e-06
  TIGR01184  95 veehielvglrea..adkrpeqlsggmkqrvaiaralsirpklllldepfgald 146
                ++ h++  gl++   +  +++ lsgg k +v +  ++   p+ll+ldep   ld
    MMETSP1174-20130828|2_1  40 IQTHLDRFGLEAEfgTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLD 93 
                6788888888765114568999***************************99988 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.2e-06   0.00037     134     182 ..      47      97 ..      29     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.2e-06
  TIGR03005 134 vGladkadalp..aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelv 182
                 Gl +   ++   a lsGGqk +v +  ++   p++l++de+t  ld e +
    MMETSP1174-20130828|2_1  47 FGLEAEFGTYGkiAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                555555555532278********************************9865 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.9e-06   0.00043     465     512 ..      48      97 ..       4     103 .] 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4.9e-06
  TIGR02204 465 GydtllGergv..tLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                G +++ G  g    LsGGqk ++ +  ++ +   +L+Lde t+ Ld es 
    MMETSP1174-20130828|2_1  48 GLEAEFGTYGKiaGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESL 97 
                66667776664227********************************9985 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05   0.00098     588     622 ..      61      95 ..      55     102 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
  TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNr 622
                +lSGGQ+ ++++  ++ + P++l++DE T  LD +
    MMETSP1174-20130828|2_1  61 GLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                79******************************976 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.6e-06   0.00083     607     652 ..      49      96 ..      15     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 9.6e-06
  TIGR00958 607 ydtevgekGsq..lsgGqkqriAiARALvrkPrvLiLDeAtSALDaev 652
                 + e g  G+   lsgGqk ++ +   +   P +L+LDe t  LD e+
    MMETSP1174-20130828|2_1  49 LEAEFGTYGKIagLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRES 96 
                55666777764349*******************************875 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05    0.0017     129     163 ..      60      94 ..      18      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.9e-05
  TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgalda 163
                + lsGGq+ +v +  ++   p++l+ldep   ld 
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                579**************************999985 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-05    0.0018     112     174 ..      29      92 ..      10     102 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-05
  TIGR03411 112 lfarlskeekerieevleligLeekadk..kaglLshGqkqwLeigmllvqepkllllDePvaGm 174
                + + ++k ++  i++ l+  gLe++  +  k + Ls Gqk  + +g  + + p+ll+lDeP+  +
    MMETSP1174-20130828|2_1  29 I-VSQRKLTTGGIQTHLDRFGLEAEFGTygKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYL 92 
                3.44455566779999999999998765225678***************************9766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.1   5.3e+02     100     120 ..      16      36 ..      11      47 .. 0.61
   2 !   13.8   0.0   3.8e-05    0.0033     168     202 ..      61      95 ..      53     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.1
  TIGR03269 100 sdklkkrlkkriaimlqrtfa 120
                 +++ ++l ++++i+ qr ++
    MMETSP1174-20130828|2_1  16 MKAMDEKLAQQNSIVSQRKLT 36 
                455666666666666666655 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.8e-05
  TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpk 202
                 lsGG+k +vv+   + + p ll+ dept  ld +
    MMETSP1174-20130828|2_1  61 GLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                599**************************999976 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.9e-05    0.0034     130     183 ..      40      94 ..      13     101 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.9e-05
  TIGR02769 130 iaellelvelrsevld.klPrqlsGGqlqriniaralavePklivldeavsnldl 183
                i+  l+  +l++e     + + lsGGq  ++ +  ++   P+l+vlde    ld+
    MMETSP1174-20130828|2_1  40 IQTHLDRFGLEAEFGTyGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                6777888888888644145678***************************999997 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.1e-05    0.0036     614     649 ..      60      95 ..      37     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.1e-05
  TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDae 649
                a lsGGq+ ++ +  ++ + P +L+lDE t  LD e
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                469*******************************87 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.4e-05    0.0056     148     183 ..      60      95 ..      16     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.4e-05
  TIGR02324 148 atfsGGekqRvniaraliadrPiLL.LdePtasLdaa 183
                a  sGG k +v +  ++    P LL LdePt  Ld  
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWN-CPHLLvLDEPTNYLDRE 95 
                678**********999999.7765439*****99975 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   9.7e-05    0.0085    2068    2103 ..      60      94 ..      32     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.7e-05
  TIGR01257 2068 agtysggnkrklstaialigcpplvlldepttgmdp 2103
                 ag  sgg+k k+    ++  cp l++ldept  +d 
    MMETSP1174-20130828|2_1   60 AG-LSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94  
                 33.69**************************99986 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00011    0.0094     139     173 ..      60      94 ..      18     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
  TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldp 173
                + lsggqk +v +  ++   p++l+ de t  ld 
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDR 94 
                78*****************************9995 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012      0.01     137     172 ..      60      95 ..       9     102 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00012
  TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaq 172
                a lsGGq+ +v +  ++   p++l+ldep   ld +
    MMETSP1174-20130828|2_1  60 AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                679***************************999965 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014     0.012     586     643 ..      36      93 ..       7      96 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00014
  TIGR01193 586 eiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnld 643
                    i++ ++++ l  +     + + +sgGqk ++ +  ++    ++l+lde t  ld
    MMETSP1174-20130828|2_1  36 TTGGIQTHLDRFGLEAEFGTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLD 93 
                34457777776654444444456678*****************************999 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0002     0.017     128     162 ..      61      95 ..      24     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0002
  TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpk 162
                 lsGGq+ +v +   + +   +l+ldep   ld+ 
    MMETSP1174-20130828|2_1  61 GLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                59***************9999*********99975 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021     0.019     113     181 ..      29      98 ..       7     103 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00021
  TIGR01978 113 eldllefek.llkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalk 181
                 +++++ ++  ++++l+ + l++e+ +     G sGG k +  +   +   P+l +LDe    lD ++l 
    MMETSP1174-20130828|2_1  29 IVSQRKLTTgGIQTHLDRFGLEAEFGTYGKIAGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRESLG 98 
                44554444325788899999999999999999*********9999999999*********9999988875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00045     0.039      80     159 ..      14      95 ..      10     100 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00045
  TIGR02770  80 tikeqlletlkaleklskq...akelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvv 159
                 + + + e l +++++ +q   ++  i   l++ gLe       k    lsGG   +v++  ++   + ll+ DePt  lD  
    MMETSP1174-20130828|2_1  14 KMMKAMDEKLAQQNSIVSQrklTTGGIQTHLDRFGLEAEFGTYGKI-AGLSGGQKVKVVMGSSMWNCPHLLVLDEPTNYLDRE 95 
                6777777777777776644111344567778888887444444443.479***8888888888889999***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        62  (0.0151146); expected 4.1 (0.001)
Passed Fwd filter:                        47  (0.0114578); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              47  [number of targets reported over threshold]
# CPU time: 0.44u 0.45s 00:00:00.89 Elapsed: 00:00:20.51
# Mc/sec: 6.63
//
Query:       MMETSP1174-20130828|4_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:01.14
# Mc/sec: 64.27
//
Query:       MMETSP1174-20130828|3_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.25s 00:00:00.45 Elapsed: 00:00:02.76
# Mc/sec: 60.26
//
Query:       MMETSP1174-20130828|5_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.25s 00:00:00.42 Elapsed: 00:00:01.54
# Mc/sec: 58.28
//
Query:       MMETSP1174-20130828|7_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.26s 00:00:00.42 Elapsed: 00:00:02.78
# Mc/sec: 34.18
//
Query:       MMETSP1174-20130828|9_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.61
# Mc/sec: 116.84
//
Query:       MMETSP1174-20130828|10_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 217.05
//
Query:       MMETSP1174-20130828|11_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.30s 00:00:00.49 Elapsed: 00:00:02.16
# Mc/sec: 47.66
//
Query:       MMETSP1174-20130828|16_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.26s 00:00:00.44 Elapsed: 00:00:01.25
# Mc/sec: 97.14
//
Query:       MMETSP1174-20130828|19_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.77
# Mc/sec: 113.13
//
Query:       MMETSP1174-20130828|17_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-218  725.3   9.2   1.2e-218  725.1   6.3    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   6.1e-165  547.9   5.7   6.9e-165  547.7   3.9    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.9e-11   41.4   0.6    1.9e-11   41.4   0.4    1.8  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
      8e-09   33.1   1.9    4.8e-07   27.3   0.1    2.6  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    0.00052   17.0   0.2    0.00052   17.0   0.1    2.4  3  TIGR01174 ftsA: cell division protein FtsA
     0.0018   14.7   0.0      0.003   13.9   0.0    1.3  1  TIGR01312 XylB: xylulokinase
  ------ inclusion threshold ------
      0.012   12.7   2.1      0.044   10.9   0.5    2.5  3  TIGR03706 exo_poly_only: exopolyphosphatase


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  725.1   6.3    2e-221  1.2e-218       2     514 ..      28     548 ..      27     549 .] 0.96

  Alignments for each domain:
  == domain 1    score: 725.1 bits;  conditional E-value: 2e-221
  TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen..evkveved..keytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititas.sglseeeiermvkeaeana 514
                +iGidLGtt s+v v++ g+ ++i+n +G+r tPs+v++   gerl+G++ak+qa +npe+t++ +krliGrk++   v++++k +p+k++++++   v+v+v++  k ++peeisa+iL+k+++ ae ++G+++ +av+tvPayfndaqrqatkdaG+i+G+ v+riinePtaaa+ayG+dk+  +++ilvfdlGGGtfdv++l +++gvfev++t+Gdt+LGG+dfd+++++y+++ +kk+e +d+s dk a+q+l+ + e+ k  Lss++++++++  +       ++++++ltra+feel +dl+++t  pv k+l+d +l+++e+de++lvGGstriP+vq+l+k++++ kep++++nPde+va Gaa+qgg+l+g+     +d+lLldvtPLs giet+Ggv+tkli+rnt iPtkksq+fst +dnqpav i+v+ Ger++++dn  lg+feLtgippaPrGvpq+evtf+idanGil+vsa+dk+tgk ++itita+ + lsee+iermv+eae++a
   MMETSP1174-20130828|17_1  28 VIGIDLGTTYSCVGVFQNGRVEIIPNDQGNRITPSYVSWDPAGERLIGDAAKNQATVNPEQTVFDVKRLIGRKYSdkTVQADKKLLPFKIIAKDEkpFVQVDVKGelKAFAPEEISAMILSKMRTVAEGFMGKDIMHAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKKGGEKNILVFDLGGGTFDVTLLTIDNGVFEVLATNGDTHLGGEDFDQRVMQYFIKMLKKKEQVDVSSDKRAMQKLRREVERVKRALSSQHQARVEIESLM----DGVDMSETLTRARFEELNMDLFKKTLVPVGKVLEDGDLKKNEVDELVLVGGSTRIPKVQQLLKDYFNgKEPSRGINPDEAVAYGAAVQGGILSGDaseaTQDLLLLDVTPLSQGIETVGGVMTKLINRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERSMTKDNPLLGKFELTGIPPAPRGVPQVEVTFEIDANGILQVSAEDKGTGKAETITITAEkGRLSEEDIERMVREAEEFA 548
                8************************************************************************9865799999********999855455555543389*************************************************************************************************************************************************************************98774....35789***********************************************************9866***************************887789******************************************************************************************************************975267**************976 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.7   3.9  1.2e-167  6.9e-165       1     501 [.      28     544 ..      28     549 .] 0.93

  Alignments for each domain:
  == domain 1    score: 547.7 bits;  conditional E-value: 1.2e-167
  TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGr..sledvkkeaeelpyel.edakgemvrlktaqg..evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.Lsdeeiekmlkds 501
                ++GiDlGtt+s v + ++g++e++++++g+ + ps v++   g+  +G++ak++a+ +p++t+  vkRl+Gr  s + v++ ++ lp+++ +++++  v+++++ +    +P e+sa iL+k+++ ae  +gk++ +av+tvPAYF+daqrqatkdA+ ++g+ v R++nePtaAA+AYG+dk   e+ ++v+DLGGGtFDv +L +++GvFevlat Gd++LGG+DfD++++++++    kk++++ + +k  +++l ++++++k+aL+++++++ve++   +g d++ +l+r+++eel  +l kktl +v ++l+d +lk++e++e vlvGGstr+p+v+q ++++F+ kep   ++Pde vA GAa+q  +L+++ ++   dllLlDv+PLs G+et+GG++ k+i Rnt iP++k+q F ty+D+q a+ i+v  GeR + +d+  L++FeL gipp + G+ +++vtf++Da+G+l+vsa++k tg+ ++i++    g Ls+e+ie+m++++
   MMETSP1174-20130828|17_1  28 VIGIDLGTTYSCVGVFQNGRVEIIPNDQGNRITPSYVSWDPAGERLIGDAAKNQATVNPEQTVFDVKRLIGRkySDKTVQADKKLLPFKIiAKDEKPFVQVDVKGElkAFAPEEISAMILSKMRTVAEGFMGKDIMHAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKkGGEKNILVFDLGGGTFDVTLLTIDNGVFEVLATNGDTHLGGEDFDQRVMQYFIkmlkKKEQVDVSSDKRAMQKLRREVERVKRALSSQHQARVEIESlmDGVDMSETLTRARFEELNMDLFKKTLVPVGKVLEDGDLKKNEVDELVLVGGSTRIPKVQQLLKDYFNgKEPSRGINPDEAVAYGAAVQGGILSGDASEAtqDLLLLDVTPLSQGIETVGGVMTKLINRNTVIPTKKSQTFSTYQDNQPAVLIQVFEGERSMTKDNPLLGKFELTGIPPAPRGVPQVEVTFEIDANGILQVSAEDKGTGKAETITITAEKGrLSEEDIERMVREA 544
                59**********************************************************************4445668999999****9344455567777666654789***********************************************************************97789**********************************************9998555556666677778888888889999*********99998875469*****************************************************************6489***********************876554449*****************************************************************************************************************987644**********997 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.32   1.9e+02       5      21 ..      29      45 ..       5      53 .. 0.68
   2 !   41.4   0.4   3.3e-14   1.9e-11      96     303 ..     157     375 ..     138     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.32
  TIGR00904  5 lgidlGtantlvyvkgk 21
               +gidlGt+   v v ++
   MMETSP1174-20130828|17_1 29 IGIDLGTTYSCVGVFQN 45
               67777777666655444 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 3.3e-14
  TIGR00904  96 llkpk...vlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgs.mvvdiGGGttevavisl.gGiv....vsksirvaGdeldeaiikyi....rrkyn..lliGertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllske 303
                ++ +     +++vP+   + +r+a k++ + +G     +i+ep aaai  ++  +    + +v d+GGGt +v+++++ +G+     +     ++G+++d+ +++y     ++k +  +   +r+ +k++ e+  ++    +++++  v+ + l+ G+  +++l+  +  e   +  ++    v ++le+   +l ++ v++ +vl GG + +  +++ll++ 
   MMETSP1174-20130828|17_1 157 FMGKDimhAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKKGGEKNiLVFDLGGGTFDVTLLTIdNGVFevlaTNGDTHLGGEDFDQRVMQYFikmlKKKEQvdVSSDKRAMQKLRREVERVKRAL-SSQHQARVEIESLMDGVDMSETLTRARFEELNMDLFKKTLVPVGKVLEDG--DLKKNEVDE-LVLVGGSTRIPKVQQLLKDY 375
                45444333689*****************************************999877662678************984465411113345799********99995222344433104445677899*****9998875.45556666667899**************9999999999999999999975..677777775.89999999999998888774 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       2.9   1.7e+03       2     130 ..      31      48 ..      26      54 .. 0.57
   2 !   27.3   0.1   8.3e-10   4.8e-07      44     143 ..     145     250 ..     139     298 .. 0.87
   3 !    4.7   0.0    0.0067       3.9     189     218 ..     347     376 ..     312     389 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2.9
  TIGR02529   2 vdlGtanivivvldednkPvagvlefadvvrdGlvvdfleaveivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlkngavvdvGGGttGisilkkGkv 130
                +                                                                                                               d+G     + ++++G+v
   MMETSP1174-20130828|17_1  31 I---------------------------------------------------------------------------------------------------------------DLGTTYSCVGVFQNGRV 48 
                3...............................................................................................................44444445566666655 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 8.3e-10
  TIGR02529  44 eivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlk......ngavvdvGGGttGisilkkGkviysadeatGGthl 143
                 i+ +++  +e  +G ++ +a ++vP   ++ + +++ +    +G+ v ++++ePtaaa +  ++      n  v d+GGGt  +++l   + ++    + G thl
   MMETSP1174-20130828|17_1 145 MILSKMRTVAEGFMGKDIMHAVVTVPAYFNDAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDkkggekNILVFDLGGGTFDVTLLTIDNGVFEVLATNGDTHL 250
                6888999999*************************************************99988522222255799********9999888877777666666665 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0067
  TIGR02529 189 hiekqkvkdlylvGGassfsefedvfekel 218
                 ++k++v++l lvGG++ +++++++++ ++
   MMETSP1174-20130828|17_1 347 DLKKNEVDELVLVGGSTRIPKVQQLLKDYF 376
                58999*******************999887 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   1.7e+02     197     219 ..      27      49 ..       6      55 .. 0.59
   2 !   17.0   0.1   8.9e-07   0.00052     168     341 ..     186     379 ..     161     391 .. 0.73
   3 ?   -3.6   0.0       1.7   9.7e+02      86     109 ..     521     545 ..     505     547 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.28
  TIGR01174 197 GvvlidiGggttdiavytegsir 219
                 v+ id+G     + v+++g++ 
   MMETSP1174-20130828|17_1  27 TVIGIDLGTTYSCVGVFQNGRVE 49 
                34446666666666666666554 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 8.9e-07
  TIGR01174 168 eraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavytegs.....irytkvlpiggnnvtkDlakalktpleeAEkiKikygs.alieleseeesveipsvg.ereerelsk....kel.aeiieaRveEileivk.......qkelkksgl.keelaagivltGGaaqlkgikelaekvfdkk 341
                + +g+ v++i+ ++ A+a+a  +++   e  +++ d+Gggt d+++ t ++     +  +    +gg+   + + + +   l++ E++ +   + a+++l  e e v+ +    ++++ e+++     ++  +  +aR eE+ + +         k l++  l k+e+ + +vl GG +++  +++l ++ f+ k
   MMETSP1174-20130828|17_1 186 TISGMTVQRIINEPTAAAIAYgMDKKGGEKNILVFDLGGGTFDVTLLTIDNgvfevLATNGDTHLGGEDFDQRVMQYFIKMLKKKEQVDVSSDKrAMQKLRREVERVKRALSSqHQARVEIESlmdgVDMsETLTRARFEELNMDLFkktlvpvGKVLEDGDLkKNEVDE-LVLVGGSTRIPKVQQLLKDYFNGK 379
                55899**************9747888889999*************998765222224556677889999999999999999********987761555557777777755444122222322211112331467899999985544446677777888888885566655.******************999854 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 1.7
  TIGR01174  86 kgvvaikdk.evtqediervleaak 109
                +++  +++k  + +edier++ +a+
   MMETSP1174-20130828|17_1 521 ETITITAEKgRLSEEDIERMVREAE 545
                3333333334889999999998885 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.2e-06     0.003     388     442 ..     350     406 ..     308     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.2e-06
  TIGR01312 388 glkikeirliGGGaksevwrqiladilglev..vvpeeeegaalGaAilAaialgek 442
                  +++e++l+GG ++ + ++q+l d ++ +   +  + +e++a+GaA+++ i +g++
   MMETSP1174-20130828|17_1 350 KNEVDELVLVGGSTRIPKVQQLLKDYFNGKEpsRGINPDEAVAYGAAVQGGILSGDA 406
                4578899********************97651155569***********99988754 PP

>> TIGR03706  exo_poly_only: exopolyphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   7.5e-05     0.044      85     142 ..     175     232 ..     128     306 .. 0.74
   2 ?   -0.4   0.0      0.21   1.2e+02     188     210 ..     345     365 ..     300     393 .. 0.76
   3 ?   -2.4   0.0      0.82   4.8e+02      41      62 ..     527     548 ..     525     549 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.5e-05
  TIGR03706  85 kNgeeflkevekelgleievisGeeEArliylgvastlpeadglvvDiGGgStElilv 142
                  +++ +k + ++ g++++ i  e  A  i++g+ +   e++ lv D+GGg  +++l+
   MMETSP1174-20130828|17_1 175 DAQRQATKDAGTISGMTVQRIINEPTAAAIAYGMDKKGGEKNILVFDLGGGTFDVTLL 232
                55677788999999999999999999***************************99984 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.21
  TIGR03706 188 sakelkkakgkeligvgGtiral 210
                +   lkk + +el++vgG+ r +
   MMETSP1174-20130828|17_1 345 D-GDLKKNEVDELVLVGGSTR-I 365
                4.67899999********987.3 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.82
  TIGR03706  41 detgrLseeaieraleaLkrFa 62 
                +e+grLsee ier ++  ++Fa
   MMETSP1174-20130828|17_1 527 AEKGRLSEEDIERMVREAEEFA 548
                5789999999999999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.43s 00:00:01.06 Elapsed: 00:00:02.23
# Mc/sec: 324.94
//
Query:       MMETSP1174-20130828|32_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.76
# Mc/sec: 78.15
//
Query:       MMETSP1174-20130828|33_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-40  135.4   0.8    5.9e-40  135.3   0.6    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    1.6e-18   64.9   0.1    1.7e-18   64.8   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.6   2.9e-43   5.9e-40     175     271 ..       2      98 ..       1     100 [] 0.98

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 2.9e-43
  TIGR01534 175 sglmtTvHayTadQkllDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg 271
                ++lmtTvHa+Ta+Qk++Da ++kd+r +R a+ niip+stgaakav+kv+p+l+gkltg+a+RvPt+dvS+vdl+++l+k +t+e+++a +k  se+
   MMETSP1174-20130828|33_1   2 EALMTTVHAMTATQKVVDASSNKDWRGGRCASGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTADVSVVDLTCRLAKGTTYEDICATIKTNSET 98 
                799*****************************************************************************************99986 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   8.4e-22   1.7e-18     173     267 ..       3      98 ..       1     100 [] 0.95

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 8.4e-22
  TIGR01532 173 gtittihsamndqqvidayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaes 267
                + +tt+h+    q+v+da  n d r  r+as  iip +t+ ak +++++p+l+++l  +a rvpt +v+ +dl+ ++ k +  +++  +++  +e+
   MMETSP1174-20130828|33_1   3 ALMTTVHAMTATQKVVDASSNkDWRGGRCASGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTADVSVVDLTCRLAKGTTYEDICATIKTNSET 98 
                568***************9988********************************************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.27s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 227.57
//
Query:       MMETSP1174-20130828|40_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.25s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|50_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 356.73
//
Query:       MMETSP1174-20130828|51_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.80
# Mc/sec: 425.66
//
Query:       MMETSP1174-20130828|61_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.26s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 620.95
//
Query:       MMETSP1174-20130828|62_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|55_1  [L=2618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.5   0.0      0.035   10.5   0.0    1.4  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.6e-06     0.035     156     282 ..    1737    1854 ..    1681    1915 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.6e-06
  TIGR01447  156 avalalksnfslitGGPGTGKTttvarlllalikqskaqgklrialaaPTGkAaarLteslkkavkklaleeeliaalpseasTihrLLgakpdkkefrhheenplplDvlvvDEaSMvdlelmakL 282 
                  +++a     +l++G  GTGK  +v  + + l++           ++a TG Aaa        ++++++++ + + alp   +     L +k+++++ ++    + ++ v+vvDE S +d +++ ++
   MMETSP1174-20130828|55_1 1737 EIKKAGLTTTCLLIGAGGTGKSAVVHTIERKLQSMGLF-----TLITAYTGVAAAPFFGPTLLKLFNMSITGKSASALPKLDKATVSTLDSKFESESGMK----KKAVGVIVVDEVSFIDEKIIGHM 1854
                 456666677899************99988887766555.....5899********998888888889****99999999876666667889996665555....55799***********8776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.78u 0.39s 00:00:02.17 Elapsed: 00:00:01.07
# Mc/sec: 3229.42
//
Query:       MMETSP1174-20130828|64_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|70_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.25s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1174-20130828|73_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 214.04
//
Query:       MMETSP1174-20130828|78_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|80_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|79_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|84_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|92_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 152.07
//
Query:       MMETSP1174-20130828|94_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|96_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.61
# Mc/sec: 110.35
//
Query:       MMETSP1174-20130828|101_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 963.16
//
Query:       MMETSP1174-20130828|106_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|107_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                      241  (0.0587518); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 236.48
//
Query:       MMETSP1174-20130828|108_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.6   1.2      0.043   12.2   0.8    1.4  1  TIGR01707 gspI: general secretion pathway protein I


Domain annotation for each model (and alignments):
>> TIGR01707  gspI: general secretion pathway protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   1.1e-05     0.043      25      75 ..      20      70 ..       9      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
  TIGR01707 25 vgestnaaerlrdktlAllvadnrla.elslevtPealgrnsgkeevaGrew 75
                +e +  +  +++k  A++va n l  el+ e+   +  r  + e+v+G+e+
  MMETSP1174-20130828|108_1 20 KEEIIVRNREMEEKLQAEIVAMNELVeELQREQL-SSVQRMADPERVNGEEK 70
               4555666788**************9956677755.999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.24s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 305.83
//
Query:       MMETSP1174-20130828|112_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 221.55
//
Query:       MMETSP1174-20130828|118_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|125_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 267.86
//
Query:       MMETSP1174-20130828|124_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 232.42
//
Query:       MMETSP1174-20130828|129_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.50
# Mc/sec: 894.89
//
Query:       MMETSP1174-20130828|131_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 505.00
//
Query:       MMETSP1174-20130828|133_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 243.67
//
Query:       MMETSP1174-20130828|147_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|148_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|152_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 893.46
//
Query:       MMETSP1174-20130828|153_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-49  166.0   0.1    2.9e-49  165.9   0.1    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    3.2e-29  100.0   0.0    3.4e-29   99.9   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.1   1.4e-52   2.9e-49      73     210 ..       3     137 ..       1     138 [] 0.95

  Alignments for each domain:
  == domain 1    score: 165.9 bits;  conditional E-value: 1.4e-52
  TIGR01534  73 ivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavhakdlrraRaaaenii 210
                i l+++rdp+++p+++ g+ +v e+tGafl +e +++ hl  gakkV+ saP+kd+  + +V+gvN++e+++ + + +S+ASCTTn lap++k++++++gi+++lmtTvHa+Ta+Qk++Da ++kd+r +R a+ nii
  MMETSP1174-20130828|153_1   3 IPLSHTRDPAEIPFEKYGATYVCESTGAFL-TEASIQPHLAGGAKKVIFSAPAKDD-SKVIVMGVNQDEYES-SFDAVSCASCTTNGLAPMVKAINDAYGIEEALMTTVHAMTATQKVVDASSNKDWRGGRCASGNII 137
                678899************************.66668******************96.66***********95.999*************************************************************9 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.7e-32   3.4e-29      73     206 ..       4     137 ..       1     138 [] 0.95

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 1.7e-32
  TIGR01532  73 rvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvidayhn.dlrrtraasqsii 206
                 + +++++  +++++ g   v + tg + ++++ + ++a gakkv+fs p+  d    iv gvnq++ ++    vs ascttn   p++k ++da+gie + +tt+h+    q+v+da  n d r  r+as  ii
  MMETSP1174-20130828|153_1   4 PLSHTRDPAEIPFEKYGATYVCESTGAFLTEASIQPHLAGGAKKVIFSAPAKDD-SKVIVMGVNQDEYESSFDAVSCASCTTNGLAPMVKAINDAYGIEEALMTTVHAMTATQKVVDASSNkDWRGGRCASGNII 137
                567899999*****************************************7766.6899***********************************************************9988*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 492.28
//
Query:       MMETSP1174-20130828|159_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|167_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   27.2   0.0      3e-07   27.2   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
     0.0031   14.3   0.0     0.0034   14.2   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
     0.0042   14.6   0.0     0.0051   14.3   0.0    1.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0044   14.3   0.0     0.0045   14.3   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
  ------ inclusion threshold ------
      0.035   11.3   0.0      0.036   11.2   0.0    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.7e-10     3e-07     184     225 ..       2      43 ..       1      62 [. 0.84

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 3.7e-10
  TIGR03719 184 lldePtnhldaesvaWlekflkeykGtvvavthdryfldnva 225
                +ldePtn+ld es+  +   +k ykG ++++th+  f + v+
  MMETSP1174-20130828|167_1   2 VLDEPTNYLDRESLGAMAAAIKIYKGGILLITHNSEFSQTVC 43 
                589999999999999999999999999999999888877664 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-06    0.0034     481     521 ..       2      40 ..       1      47 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.1e-06
  TIGR02857 481 llDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                +lDEPt  LD+e+  ++ +a++ +  g  +ll++H+ + ++
  MMETSP1174-20130828|167_1   2 VLDEPTNYLDRESLGAMAAAIKIYKGG--ILLITHNSEFSQ 40 
                7********************986555..7899**998765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.2e-06    0.0051     150     188 ..       2      38 ..       1      44 [. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.2e-06
  TIGR01189 150 iLDEPttalDkegvellaellaaHlargGivllathqdl 188
                +LDEPt  lD+e+   +a++++  + +gGi l++   + 
  MMETSP1174-20130828|167_1   2 VLDEPTNYLDRESLGAMAAAIK--IYKGGILLITHNSEF 38 
                8****************99997..779998888766554 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.5e-06    0.0045     167     228 ..       2      60 ..       1      68 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.5e-06
  TIGR01978 167 iLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                +LDe    lD ++l ++a+ ++ ++    ++l+ith++++ +++ P++ +   dG +  +G 
  MMETSP1174-20130828|167_1   2 VLDEPTNYLDRESLGAMAAAIKIYK---GGILLITHNSEFSQTVCPETWYCPGDGSLQITGA 60 
                89****************9999886...69*****************999998888877775 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.4e-05     0.036     167     215 ..       2      48 ..       1      63 [. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.4e-05
  TIGR00972 167 LlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaf 215
                +lDePt  LD ++   + + i+  k    i+++thn ++++ v  +t +
  MMETSP1174-20130828|167_1   2 VLDEPTNYLDRESLGAMAAAIKIYKG--GILLITHNSEFSQTVCPETWY 48 
                69******************998876..6999*******9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 260.21
//
Query:       MMETSP1174-20130828|168_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|170_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1174-20130828|176_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|178_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 218.07
//
Query:       MMETSP1174-20130828|177_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-20   69.5   0.0    6.9e-20   69.3   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    5.6e-16   56.5   0.0    6.1e-16   56.4   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   3.4e-23   6.9e-20     257     330 .]       2      74 ..       1      74 [. 0.95

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 3.4e-23
  TIGR01534 257 tkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                t+e+++a +k +se+ +kg lgy +++lVS+D+ ++++s i+da a ++  l+ ++vkvvaWYDNE+gysnr+vd
  MMETSP1174-20130828|177_1   2 TYEDICATIKTTSETsQKGFLGYCDEPLVSTDFESDERSCIFDAGAGIM--LNPNFVKVVAWYDNEWGYSNRVVD 74 
                7899*********************************************..5567******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     3e-19   6.1e-16     255     325 .]       4      74 ..       1      74 [. 0.97

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 3e-19
  TIGR01532 255 nevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                +++  +++ ++e++ +g++ y + plvs df+ d  s i d     + ++++vk+++w+dnewg++nr++d
  MMETSP1174-20130828|177_1   4 EDICATIKTTSETSQKGFLGYCDEPLVSTDFESDERSCIFDAGAGIMLNPNFVKVVAWYDNEWGYSNRVVD 74 
                689999**************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1174-20130828|184_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.2   0.1      0.035   11.2   0.1    1.0  1  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit


Domain annotation for each model (and alignments):
>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.5e-06     0.035     132     177 ..       6      50 ..       1      55 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-06
  TIGR00735 132 kreaeneeakyevtikgGrestdldvvewakeveelGaGeilltsm 177
                + e++ ++++++++ k G++ ++    +w ++ ++l aG il +s+
  MMETSP1174-20130828|184_1   6 WSETQGSQGSWQMQRKIGQRLRGARGATWLERSASLTAGAIL-NSI 50 
                67788899*******************************996.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|185_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 116.28
//
Query:       MMETSP1174-20130828|191_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 368.79
//
Query:       MMETSP1174-20130828|194_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.67
# Mc/sec: 238.37
//
Query:       MMETSP1174-20130828|198_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 255.18
//
Query:       MMETSP1174-20130828|197_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 354.49
//
Query:       MMETSP1174-20130828|199_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|201_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.32    9.5   3.9       0.56    8.7   2.7    1.5  1  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.7   0.00014      0.56      17      44 ..      15      41 ..       4      58 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00014
  TIGR02419 17 alaaarakkrveaasllvCeeCgepIPe 44
               + + +ra + +++ s   C  Cg++IP 
  MMETSP1174-20130828|201_1 15 KEKPRRAPA-CKIWSPKSCVSCGNNIPS 41
               233333333.88999999*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 217.39
//
Query:       MMETSP1174-20130828|203_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1174-20130828|200_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       532  (0.129693); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 965.77
//
Query:       MMETSP1174-20130828|202_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   17.9   2.6        0.3    9.1   0.2    2.3  2  TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01727  oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0001      0.41      40      77 ..      43      80 ..      30      87 .. 0.75
   2 !    9.1   0.2   7.4e-05       0.3      38      76 ..     254     292 ..     238     296 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0001
  TIGR01727 40 ieGevpslinlpsgCvFaeRCpvakeeCkkeepelvei 77
               ++ ++   ++   gC++ ++C++a++e + ++p+  + 
  MMETSP1174-20130828|202_1 43 LKTKMCRRLKESGGCRWGDKCSFAHDESELQQPDYSKA 80
               5566677777888****************999987665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 7.4e-05
  TIGR01727  38 lkieGevpslinlpsgCvFaeRCpvakeeCkkeepelve 76 
                  ++ ++   ++ p gC++ ++C++a+++ + +ep+ ++
  MMETSP1174-20130828|202_1 254 PLLKTKMCRRMKEPGGCRWGDKCSFAHSQSELKEPDYTK 292
                4466677888999****************9999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 995.66
//
Query:       MMETSP1174-20130828|204_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 536.47
//
Query:       MMETSP1174-20130828|208_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       412  (0.100439); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|209_1  [L=868]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.70
# Mc/sec: 1636.66
//
Query:       MMETSP1174-20130828|212_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-06   22.7   0.0    5.9e-06   22.7   0.0    1.0  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
  ------ inclusion threshold ------
      0.019   12.4   0.0      0.021   12.2   0.0    1.0  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.9e-09   5.9e-06     659     695 .]       3      39 ..       1      70 [. 0.65

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.9e-09
  TIGR02353 659 ivlygavvgedavlgpdslvMkgeevpahtrWeGnPa 695
                ++l ga+v+++a+l p ++v  g ++pa+  W+GnPa
  MMETSP1174-20130828|212_1   3 VILEGALVEAGATLSPGTVVPPGRRIPANQHWAGNPA 39 
                4555666666666666666666666666666666664 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     1e-05     0.021     173     224 ..       2      56 ..       1      62 [. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1e-05
  TIGR03532 173 avileGvkvGkGavvaaGaivi..edvpentvvaGvpakvikevd.ektkektel 224
                 vileG  v +Ga ++ G++v   + +p+n   aG pa  + +      k+k+e+
  MMETSP1174-20130828|212_1   2 CVILEGALVEAGATLSPGTVVPpgRRIPANQHWAGNPAEFVADGAaGLDKAKREV 56 
                59*******************63378************99876431345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1174-20130828|213_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.25s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 195.98
//
Query:       MMETSP1174-20130828|214_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|216_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|219_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 206.44
//
Query:       MMETSP1174-20130828|221_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.94    6.5  25.0          1    6.4  17.3    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  17.3   0.00024         1     151     202 ..      58     114 ..      34     116 .] 0.47

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00024
  TIGR02794 151 kkakeeAakkaEeeakakaaaeakkkaEae....eakkkaeaeak.KakaeaeaKak 202
                ++a  e  +ka e a  k a+  kkk+++e     ak+k++ +a+ ++k  a++Kak
  MMETSP1174-20130828|221_1  58 RRARKEFTAKARETATMKVAELRKKKRDEEmekaVAKQKKKDDAErRKKDAAQKKAK 114
                222233444555555555555555555532211112222222222222222222322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       414  (0.100926); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.27s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 392.58
//
Query:       MMETSP1174-20130828|218_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|224_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 293.98
//
Query:       MMETSP1174-20130828|234_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|241_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|244_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 143.99
//
Query:       MMETSP1174-20130828|245_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 310.56
//
Query:       MMETSP1174-20130828|252_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1174-20130828|257_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 178.19
//
Query:       MMETSP1174-20130828|267_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|271_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   17.2   0.0     0.0014   14.5   0.0    1.8  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.5e-07    0.0014     125     205 ..       9      78 ..       2      80 .] 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.5e-07
  TIGR00870 125 tseftkgitalilAihkqnyeivklLlekgasvearakgdefvksqekdslyhgespLnlaaclasesivsllsedp.Adil 205
                  +  +g t+l +A+++ n+ +v+ L          a+ d  + + +     +g  pL +aac ++ ++v++l  +  Ad++
  MMETSP1174-20130828|271_1   9 QARTDHGCTPLFIAAQNGNLDVVRYLAG-------EAHADVNQARTD-----YGCTPLYIAACQGNLDMVRYLAGEAhADVN 78 
                5677899*****************9964.......344444344444.....899999999999999999999877667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|280_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 543.96
//
Query:       MMETSP1174-20130828|283_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 210.47
//
Query:       MMETSP1174-20130828|282_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 127.86
//
Query:       MMETSP1174-20130828|287_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|290_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|291_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|286_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|297_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|298_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   17.3   6.1      0.025   12.5   0.7    2.0  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3   0.00012      0.49      27      45 ..       3      19 ..       1      26 [. 0.77
   2 !   12.5   0.7   6.2e-06     0.025      14      35 ..      27      49 ..      25      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00012
  TIGR02605 27 asCPeCgseelerllsaag 45
                +CP+C s++   l s  +
  MMETSP1174-20130828|298_1  3 EDCPDCASHTPPALTS--S 19
               69******98888887..4 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.2e-06
  TIGR02605 14 efevlqkmsd.dplasCPeCgse 35
               + e +q+ s+ ++  +CP+C s+
  MMETSP1174-20130828|298_1 27 RIENVQPSSNtESSEDCPDCASH 49
               67999*****9*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|300_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|304_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-07   25.7   0.0    1.9e-05   20.7   0.0    2.2  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.7e-09   1.9e-05     132     221 ..      48     130 ..      25     205 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.7e-09
  TIGR00870 132 italilAihkqnyeivklLlekgasvearakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdiltadslgntllhllvie 221
                 t+l++Ai ++n+   k+Ll++ga+v+ +++g   ++            + ++ +  + e +  ll e p d+ ++d  g t lh++  +
  MMETSP1174-20130828|304_1  48 NTPLHVAILERNVPAMKILLASGADVNRKCNGITAMHVAL----FL--GRFSAHQEASREMLEMLLAETP-DLTAKDDGGRTALHVACEI 130
                59******************************76554333....22..2344444444444444555555.6666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.84
# Mc/sec: 1302.61
//
Query:       MMETSP1174-20130828|303_1  [L=1079]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-32  108.4   0.0    7.6e-18   62.3   0.0    2.8  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.5e-18   64.7   0.0    1.1e-08   32.2   0.0    3.2  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
      2e-18   64.0   0.0      1e-10   38.5   0.0    2.2  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.3e-17   60.7   0.1    1.7e-11   41.3   0.0    2.9  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.2e-15   54.9   0.0    5.1e-12   42.9   0.0    3.6  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    4.2e-14   49.5   0.0    5.6e-08   29.3   0.0    3.0  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.3e-13   48.0   0.7    1.1e-08   31.8   0.1    2.7  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    2.2e-10   37.7   0.2    1.2e-05   22.0   0.0    3.3  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    1.6e-09   34.4   0.0    4.1e-08   29.8   0.0    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.9e-08   30.0   0.1     0.0015   13.8   0.0    2.6  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    3.5e-07   26.9   0.0      5e-07   26.4   0.0    1.2  1  TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase
    4.1e-06   23.5   0.0      0.005   13.3   0.0    2.7  3  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   2.2e-20   7.6e-18       1     280 [.      44     360 ..      44     373 .. 0.73
   2 !   42.6   0.0   2.1e-14   7.3e-12     314     399 ..     425     518 ..     416     522 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 2.2e-20
  TIGR01733   1 tYreLderanrlAraL.....keaggvrpgdrVavllersvelvvailavlkaGaayvpl...dpeyPaeR...laailedakakllltdeelaeelaeval.............eailleeleekaaedasaeeaaeak.....................skpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsve.eiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea....see.lk..slrlvllgGealtaelverlrarae.....evrlinlYGpTEttvvvtve 280
                tY++L +++ +lA++L     ++ +g++pgdr  ++   s++ ++a++a+l+aG + vp+   d +  ++    ++ai + ++a ++lt+++++ +++                 ++i                     k                     ++ d +a++ +TSGSt +PKgV+v+h +l++ l+ +++  + se+ + ++  +l +D+ ++ + ++ l++G+t v +++ +  +++ l+ +++++++ t++s+    + l a +     ++  l+   +++++ ++e ++  +ver+ a +e     +  ++ +YG +E t++v+ +
  MMETSP1174-20130828|303_1  44 TYKDLLDKSAALAQHLlaptrQNGAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVfppDVRKAKKDlymFSAIQSSSGALVALTNKTFNYAKKLSGVqsffskdsgngtwPDI---------------------KwivtdsviqaakggdgfescsPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLIgSYLGLLYSGGTGVYMSPVSFVRNPPLWMETMSKYRGTHASAPNFAYGLTARKFlakrPQPlLDlsCVEHMINAAEPIHWIDVERFYAVFEqaglkRGVIFPTYGLAEHTLFVCSN 360
                9***************44432123459********************************93333344433311134556666777777776655444444333355555443333111.....................1111111233333444555555678889********************************9999999999999******987637788999999999988887767889*********888887766666655554476553333336799*****************99888844454457899********998764 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 2.1e-14
  TIGR01733 314 vpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege.........rlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaala 399
                +++ +vGE++++ +  a+GY++ +e+tae F  +  +k+++           + rTGDl+ + +d el ++GR+ d + irG  i +++ie a++
  MMETSP1174-20130828|303_1 425 LAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQLVDKEPDGflevgsnpmGFLRTGDLGFMHND-ELFICGRMKDLIIIRGRNIFPQDIERAVE 518
                57889*****************************99998855777777888899******99998.9************************9986 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.2e-10   2.1e-07       2     169 ..      45     243 ..      44     263 .. 0.64
   2 !   32.2   0.0   3.3e-11   1.1e-08     295     370 ..     427     519 ..     401     601 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 6.2e-10
  TIGR01923   2 faeldkeaarlAkalka......qsvrkgdvvallaenslelvllllallllgveiallntr.Ltekelttql.....kelkvellltdslle.ekedlqaisldeleaeae.............aeevs...........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGl 169
                +++l  ++a lA++l a       +++ gd++ l+   sl+ + +++a+l++g+ ++++ +  + + +   ++     +++   + lt+++++   +  +   ++    ++              +   s            s s sld +a l fTSgst +pK+v  +++n  ++   +   +g+ e++   + LPlyH  Gl
  MMETSP1174-20130828|303_1  45 YKDLLDKSAALAQHLLAptrqngAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVFPPdVRKAKKDLYMfsaiqSSSGALVALTNKTFNyA-K--KLSGVQSFFSKDSgngtwpdikwivtD---SviqaakggdgfESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGL 243
                55555555666655543222112567888999999999999999999999999999988654444333333321111122333345666666621.1..122222222222233344444444440...044444555564477889******************************************************7776 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 3.3e-11
  TIGR01923 295 keghgeilvkganlmkgYlekgelt......ea............veeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlks 370
                ++++gei+v+++  ++gY+  +e t      ++            ++  G+l+tgDlg + +  +l++ +R +dliI  G Ni+p++iE++++ 
  MMETSP1174-20130828|303_1 427 QDEVGEIWVRSRSRAEGYWGLEEKTaedfggQLvdkepdgflevgSNPMGFLRTGDLGFMHN-DELFICGRMKDLIIIRGRNIFPQDIERAVED 519
                45888888888888888887543221111111211111111111145569********9998.79************************99875 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0     3e-13     1e-10      24     220 ..      41     244 ..      23     264 .. 0.72
   2 !   23.1   0.0   1.4e-08   4.7e-06     352     512 ..     426     600 ..     405     605 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 3e-13
  TIGR03098  24 rtltyaaLseevkalasgl......kalglkrgeRvaiylekrletvlalfaaslaggvfvpinP..lLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlswekl.kaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGln 220
                 tlty+ L ++  ala+ l      ++ glk g+R  +    +l+ ++a++a+ +ag + vp+ P  + ka++  y+    +     +s + +++ +++ +  ++l  +  +  +++ + + ++++ +  +++ +a++  +  ++++ + d  a + +tsGst +Pkgv++sh nl      + + +  +e    ++ LPl  D+Gl 
  MMETSP1174-20130828|303_1  41 DTLTYKDLLDKSAALAQHLlaptrqNGAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVFPpdVRKAKKDLYMFSAIQ----SSSGALVALTNKTFNYAKKLSGVQSFFSKDSGNGTWPDIKWIVTDSViQAAKGGDgfESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLI 244
                599*************9993333333589******875555699*******************9967778887777765332....34445555555555555555555555555555555554444444433033333333466666677889999************************99999999999999**********984 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.4e-08
  TIGR03098 352 apeeeGelvhrGalvakGYWndpektaerfrpl.....pkrqselkltel.avfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllat..glvae..avvlgvpdpelGqaivlvvv.esdkeeldkkellkelraelPa....ymvPakielrealprnanGkiDrk 512
                a++e+Ge+  r    a+GYW  +ektae f  +     p    e   +++     GDl+ + ++  l++ gR  ++i   G  + P+++e ++  +  g++     ++++v+ +   +ai+lv+   ++ +++d  +l  e+r ++ +     +    +    ++ ++++Gki r+
  MMETSP1174-20130828|303_1 426 AQDEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQlvdkePDGFLEVGSNPMgFLRTGDLGFMHND-ELFICGRMKDLIIIRGRNIFPQDIERAVEDAfvGKLRGgcSAAFAVTTKDGTEAIHLVAEvVEGFKDFDVSALADEMRSTIAKgqgvSVSGVYLLKPRTVEKTTSGKIARQ 600
                789***************************7654433333333333334415679*****9988.5889********************99886542233332226899999999999***9998667778899999999999887641111122223333345777777777766 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   5.1e-14   1.7e-11      27     235 ..      39     260 ..      22     286 .. 0.73
   2 !   15.4   0.0   3.8e-06    0.0013     350     386 ..     424     460 ..     414     601 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 5.1e-14
  TIGR02262  27 dvsslsygeleaevrrvaaal....r..rlGvkreervllvlldtvdfpivflGairaGivpvaln..tlltaddyaylle..dsrarvvl.vseellpvlkevlaklpdleklvvvgakpagekqlaell...ateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlm 235
                +v +l+y++l ++++ +a+ l    r    G+k+ +r llv l ++df ++f+  +raGi+ v++    +  a++  y+++  +s + +++  +++ +   k++ +      k    g+ p  +  +++ +   a++ + +++ +   d paf +++sGst  pkGv+  h nl +  +l   + +g  e  v +s   l+   Gl  + +  l  G t v m
  MMETSP1174-20130828|303_1  39 EVDTLTYKDLLDKSAALAQHLlaptRqnGAGLKPGDRALLVYLPSLDFITAFYACLRAGIIAVPVFppDVRKAKKDLYMFSaiQSSSGALVaLTNKTFNYAKKLSGVQSFFSKDSGNGTWPDIKWIVTDSViqaAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDL-MVTGVGASETTVQVSWLPLYHDMGLIGSYLGLLYSGGTGVYM 260
                46789*****999999998773333223479*****************************98888522344455555665411333333330334444444444444444444444444454444444433222677899999************************************9.66789999999*999999999999977666666666666666 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.8e-06
  TIGR02262 350 dvadgevGellvsgpssaagywnnreksratfeGewt 386
                  a++evGe+ v + s a+gyw+  ek+++ f G+  
  MMETSP1174-20130828|303_1 424 ALAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQLV 460
                5799****************************99743 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.5e-14   5.1e-12       2     454 ..      13     559 ..      12     573 .. 0.63

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.5e-14
  TIGR01734   2 liekieavaekePdliay...eeeg...qeltykeLkeesdklaaalqerl......leeke.PiivfGkqefemlvaflgsiksGhayiPv...Dtsipleri...ekikeaaepelvievaelsielvete...............vitlealeeieeekaeavelekavkeddn.yyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqllnqapysfDLsvmdlyPs.LasGGtLvaldkeitnnfkeLfeelkklglnvWvstPsfvdlclldpsf.neeklpkl.....teflfcGevLtkktakkLlerfPka.....kiyntyGPteatvavts.....vkitkeildeyer...............lPiGf..akpdvnlfivdeeG.........eklsegekGeivivGdsvskGylnnpekteeaf............feaegkr.a.yrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyik......eavvvPkynkdekveaLiaavvakeedfek 454
                l+e+++++++ +Pd       + +g   + ltyk+L ++s +la++l   +      l+  +  ++v+   + + ++af +  ++G   +Pv   D+  +++ +   ++i++++ + + ++ + +    +                   i+   ++++ +  +    +e++    d+  ++ +tsGst +PkGv +sh nL    + +++    se ++ ++  p   D+ ++  y   L sGGt v ++         L+ e  ++   +  s+P f+   l   +f  +  +p l     ++++   e +     +++   f +a      i+ tyG +e t  v s     + + k il++ +r               +  G+  +  +v+l+iv ++          + l++ e Gei +   s + Gy   +ekt+e f             e+  ++ +  rtGD g++++d  lf+ Gr+   i ++G  i  +die  +++    k       a +v ++ +  +  +L+a vv   +df+ 
  MMETSP1174-20130828|303_1  13 LLEALDHWSKVQPDKLLHtflDDHGtevDTLTYKDLLDKSAALAQHLLAPTrqngagLKPGDrALLVY-LPSLDFITAFYACLRAGIIAVPVfppDVRKAKKDLymfSAIQSSSGALVALTNKTFNYAKKLSGvqsffskdsgngtwpDIKWIVTDSVIQAAKGGDGFESCSPSLDTpAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLIGSYLGlLYSGGTGVYMSPVSFVRNPPLWMETMSKYRGTHASAPNFAY-GLTARKFlAKRPQPLLdlscvEHMINAAEPIHWIDVERFYAVFEQAglkrgVIFPTYGLAEHTLFVCSngkqvLTVNKTILESEQRavevadsgdpnayevVGCGYpgQAKGVDLKIVRQDSseasdqvgfHALAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFggqlvdkepdgfLEVGSNPmGfLRTGDLGFMHND-ELFICGRMKDLIIIRGRNIFPQDIERAVEDAFVGKlrggcsAAFAVTTK-DGTEAIHLVAEVVEGFKDFDV 559
                78999999999999765411143331115699*********999988543311112233333257777.56899999*********999998888888888766111456666666555555444433332221131112222222221222222333333333344555554444437999*************************************************99888651689***998877655555556666666667999******96.55555551555555441111145556666666666778888888875544479**********999764444467888888754442111111111111115556633334689999976531111111123578999***********************988443322211111222222222269**********.9************************999875322111222133334333.556677888888887777765 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.6e-10   5.6e-08      61     263 ..      15     211 ..       6     354 .. 0.80
   2 !   15.6   0.0   2.2e-06   0.00077     482     607 ..     479     608 ..     464     621 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.6e-10
  TIGR02188  61 ncvdrhvekrkdkvaiiwegdeegedsrkltYaellrevcrlanvl....ke..lGvkkgdr.vaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvek.easaecepekldsedplfiLYtsGstGkPkGvlhttgG 263
                +++d++ + ++dk+   +  d+ g+++ +ltY++ll++++ la+ l    ++  +G+k gdr + +Ylp   + + a+ ac R G++   vf    +      +  a+  l + +  +   g  ++l +++ +  +k +  v++    k +g+   +w + + ++ +++++  +  +  e  + + + p f+ +tsGst +PkGv+ + g 
  MMETSP1174-20130828|303_1  15 EALDHWSKVQPDKLLHTFLDDH-GTEVDTLTYKDLLDKSAALAQHLlaptRQngAGLKPGDRaLLVYLPS-LDFITAFYACLRAGIIAVPVFP---P-D----VRKAKKDLYMFSAIQSSSGALVALTNKTFNYAKKLS-GVQS-FFSKDSGNG--TWPDIKWIVTDSVIQAaKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGN 211
                6789999999999999998885.557*****************9984444224589*****84679***5.6899************999985...3.3....445555566666666667777777655554445444.3654.456666666..69*99999999999973344556666667799*****************977764 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.2e-06
  TIGR02188 482 ftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeie....salvsheavaeaa..vvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaeg 607
                 tGD   + +d  ++i GR+ d+i + G ++  ++ie    +a+v + +   +a  +v+++d +++  +va vv +  ++ d ++l++e++++++k  g   +   +l  +++ kt sGki R+  ++ +++
  MMETSP1174-20130828|303_1 479 RTGDLGFMHND-ELFICGRMKDLIIIRGRNIFPQDIEraveDAFVGKLRGGCSAafAVTTKDGTEAIHLVAEVV-EGFKDFDVSALADEMRSTIAKGQGVSVSGVYLLKPRTVEKTTSGKIARQWCKRALKN 608
                58888887776.678****************9988761111556666554445501455555555555555544.4455677779**************99999999999*************988776665 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-05    0.0037     192     253 ..     187     243 ..     150     256 .. 0.77
   2 !   31.8   0.1   3.1e-11   1.1e-08     386     516 ..     423     574 ..     384     602 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
  TIGR03205 192 ddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyal 253
                d  a+lq+t g+t  pkg +++hgnl+  + +     + + a++++v+  +  lpl+h   l
  MMETSP1174-20130828|303_1 187 DTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDL---MVTGVGASETTVQ--VSWLPLYHDMGL 243
                66799*********************987654...4444456666664..567788776555 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.1e-11
  TIGR03205 386 kvlppgevgelrirgpnvtrgywnraeesaeaf....vg...drfl...........tgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavq....evivigipdqyrgeaakafvklregakpfsldelraflagklgkhe 516
                ++l   evge+ +r    + gyw   e++ae f    v+   d fl           tgd+g++ +d   f+  r kd+ii  g n++pq ie+a+ +    +        + +  +   ea +    + eg k f + +l + ++  + k +
  MMETSP1174-20130828|303_1 423 HALAQDEVGEIWVRSRSRAEGYWGLEEKTAEDFggqlVDkepDGFLevgsnpmgflrTGDLGFMHNDEL-FICGRMKDLIIIRGRNIFPQDIERAVEDAFVGKlrggCSAAFAVTTKDGTEAIHLVAEVVEGFKDFDVSALADEMRSTIAKGQ 574
                578999*************************984443333333343333333333469*******9975.6899*********************9765332211112345667777777888888888888888888888888777777654 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.6e-08   1.2e-05      22     251 ..      11     243 ..       8     257 .. 0.76
   2 !   11.1   0.1   7.2e-05     0.025     412     456 ..     471     514 ..     366     519 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.6e-08
  TIGR03208  22 rtinddldaavarapdkpalvalrvesgavrrlsyreldalvdriavgl......arlgvgrgdvvs.lqlpnrwefvalylacarigavlnplmp..ifrerelsfmlkf.adskvlvvpksfrgfdhaamarelqsklpalrqvvvvdgdgd.ddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgf 251
                rt+ + ld   +  pdk   + l +++++v  l+y++l  +   +a+ l      +  g++ gd    + lp   +f++ + ac r g ++ p++p  + + ++  +m++    s   +v  + + f++a  + ++qs   +        g+g+  d++ +++     +  +    ++   +s d  + l +tsg+t epkgv+ +   l  n+   +  +   e+ v +   p+ h  g 
  MMETSP1174-20130828|303_1  11 RTLLEALDHWSKVQPDKLLHTFLDDHGTEVDTLTYKDLLDKSAALAQHLlaptrqNGAGLKPGDRALlVYLP-SLDFITAFYACLRAGIIAVPVFPpdVRKAKKDLYMFSAiQSSSGALVALTNKTFNYAKKLSGVQSFFSKD------SGNGTwPDIKWIVT-DSVIQAAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGL 243
                66777788888889****9999999999*********97777777766633322234678889976515566.568888888************985444455556777651566778999999******9999999876653......34444134444444.44555555567889999*********************************999999999999999998999998886 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.2e-05
  TIGR03208 412 avdaegwfdtgdlafldaegyiriagrskdviirggenipvveie 456
                + +  g++ tgdl f++ +  + i gr kd+ii  g ni   +ie
  MMETSP1174-20130828|303_1 471 GSNPMGFLRTGDLGFMHNDE-LFICGRMKDLIIIRGRNIFPQDIE 514
                345568999*******9886.679******999999999766666 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-10   4.1e-08      23     255 ..      11     259 ..       7     269 .. 0.74
   2 ?    2.0   0.0      0.03        10     406     447 ..     475     515 ..     468     522 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.2e-10
  TIGR02275  23 ktltdileeqaakkpdai..aiicge....rkfsyrelderadnlaasl......tklGikkgdtav.vqlpniaefyivffallklGvaPvlalfs...hrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivag..keveeelksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnyplssPGalGvfyaGGcvvl 255
                +tl+++l + ++ +pd++  + ++++      ++y++l +++ +la +l      + +G+k gd+a+ v lp + +f  +f+a l++G++ v  ++      k +l +++    ++  ++   +++f++ + +  +++ +s+          k   ++  ++ ++  + ++  + + d  af+q++ Gst  pk +  +h + a+ +   v     ++ t+ ++ lP  h+  l     lG++y+GG+ v 
  MMETSP1174-20130828|303_1  11 RTLLEALDHWSKVQPDKLlhTFLDDHgtevDTLTYKDLLDKSAALAQHLlaptrqNGAGLKPGDRALlVYLPSL-DFITAFYACLRAGIIAVPVFPPdvrKAKKDLYMFSAIQSSSGALVALTNKTFNYAKKLSGVQSFFSKDSGNGTWPdiKWIVTDSVIQAAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGASETTVQVSWLPLYHDMGLIG-SYLGLLYSGGTGVY 259
                6677777777777777752234443322224699**********998873333223589******972567765.899**********98777766411145678888888777888888889999999999999999888766544444123334444444444555566556667899***************************************************99975.57********9664 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.03
  TIGR02275 406 eGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeien 447
                 Gf +tGdl  + ++  + + Gr kd i   G  i  ++ie 
  MMETSP1174-20130828|303_1 475 MGFLRTGDLGFMHNDE-LFICGRMKDLIIIRGRNIFPQDIER 515
                69*******9888775.7899******999999999999886 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.3e-06    0.0015     265     454 ..      37     226 ..      20     232 .. 0.77
   2 !   13.2   0.0   6.4e-06    0.0022     619     711 ..     428     508 ..     405     522 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-06
  TIGR03443 265 ssktreftykqideasnilahyllk......tGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivlekaGeldelvedyiedelelvteipalklqddGsleGgklekeetdvlasyeklkdkktgvvvGPdsnptlsftsGseGiPkGvkGrhfslayyfpWmakrfgls 454
                 +++ ++tyk++ + s  la++ll       +G+k gd  ++    ++d++ a    l+aG +     P +PP+ ++   ++    a+   +++G l  l ++  +   +l + + ++  +d+G+ +   ++   td + +  k  d   +     d+ + l ftsGs+  PkGv   h  la+ ++ m    g s
  MMETSP1174-20130828|303_1  37 GTEVDTLTYKDLLDKSAALAQHLLAptrqngAGLKPGDRALLVYLPSLDFITAFYACLRAGII---AVPVFPPDVRKAKKDLYMFSAIQ--SSSGALVALTNKTFNYAKKL-SGVQSFFSKDSGNGTWPDIKWIVTDSVIQAAKGGDGFESCSPSLDTPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMVTGVGAS 226
                566778999999999999999998544444468999998877778899999999999999964...34888887666665555555543..45577777777766655554.5678888889998888888888888888888888888888888899****************************9998766655 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.4e-06
  TIGR03443 619 GevGeiyvragGlaegylglpelnaekfvknwfvekekwkekdkekkkawrefwlgprdrlyrtGdlGrylPdGnvecsGraddqvkirGfri 711
                 evGei+vr+   aegy gl+e +ae f  +   ++           +++ e    p   + rtGdlG ++ + +   +Gr  d + irG  i
  MMETSP1174-20130828|303_1 428 DEVGEIWVRSRSRAEGYWGLEEKTAEDFGGQLVDKE----------PDGFLEVGSNPM-GFLRTGDLG-FMHNDELFICGRMKDLIIIRGRNI 508
                69************************9976543322..........223333333333.357999*99.788889999999999999999777 PP

>> TIGR02155  PA_CoA_ligase: phenylacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.5e-09     5e-07     313     420 ..     493     602 ..     486     604 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.5e-09
  TIGR02155 313 ikGrsddllilrGvnvfptqleevl....lkldklsphyqleltreGaldeltlkvelkdesaalrlleqksllakkiekkikaevgvsvd.velvepgsler.seGkakrvvd 420
                i Gr  dl+i+rG n+fp ++e+ +    ++  + ++   + +t +   + + l +e+     ++ +  + s+la++++ +i +  gvsv+ v l +p ++e+ + Gk+ r   
  MMETSP1174-20130828|303_1 493 ICGRMKDLIIIRGRNIFPQDIERAVedafVGKLRGGCSAAFAVTTKDGTEAIHLVAEVV----EGFKDFDVSALADEMRSTIAKGQGVSVSgVYLLKPRTVEKtTSGKIARQWC 602
                78*****************9987662211555555666677776666667777777666....4455567899***************985499*********899**999665 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05     0.005      54     139 ..      13     104 ..       5     109 .. 0.83
   2 !    6.7   0.0    0.0015       0.5     233     366 ..     188     322 ..     179     333 .. 0.70
   3 ?   -1.7   0.0      0.53   1.8e+02     488     596 ..     491     600 ..     483     620 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
  TIGR02316  54 cynavdrhlekrgeqlalvavssetgeertltyrqlhrevnalasalra......lgvrrgdrv.liylpmiaeaalallacarigaihsvvf 139
                  +a+d + + ++++l    +     e  tlty++l ++  ala  l a       g++ gdr  l+ylp +     a+ ac r g i   vf
  MMETSP1174-20130828|303_1  13 LLEALDHWSKVQPDKLLHTFLDDHGTEVDTLTYKDLLDKSAALAQHLLAptrqngAGLKPGDRAlLVYLPSLD-FITAFYACLRAGIIAVPVF 104
                4589************999999999999***************99885433333378999***6269***995.67799*******9988777 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
  TIGR02316 233 epsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsap......tairvlkkqdaallrkhdlsslevlflagepl 366
                 p+++ +tsg+t  pkgv    g  a  l + + +  ga    v  s   +   +g      + l +g + v    +    ++ +w + + kyr +   sap      ta + l k +  ll   dls++e++  a ep+
  MMETSP1174-20130828|303_1 188 TPAFLQFTSGSTSEPKGVIVSHGNLAHNLDLMV-TGVGASETTVQVSWLPLYHDMGLIGSYLGLLYSGGTGVYMSPVSFVRNPPLWMETMSKYRGTHA-SAPnfayglTARKFLAKRPQPLL---DLSCVEHMINAAEPI 322
                578999*****************9999998744.3344444444444444444455444445667788888888889999999999999999987653.44422222245555555555554...888888888888886 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.53
  TIGR02316 488 tfilgrtddvinvaghrlgtreieesvssh......aavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvv..aalpktrsgkllrr 596
                 fi gr  d+i + g  +  ++ie +v          + + +  v  kd   g  a+ ++     +  +d  d  al++e+ +++ +  g     + vy++   ++ kt sgk+ r+
  MMETSP1174-20130828|303_1 491 LFICGRMKDLIIIRGRNIFPQDIERAVEDAfvgklrGGCSAAFAVTTKD---GTEAIHLVAE-VVEGFKDF-DVSALADEMRSTIAKGQGVSV--SGVYLLkpRTVEKTTSGKIARQ 600
                5889999999999999999988888775321100001111111122222...2222222211.12223333.345666666666666555433..4444441146677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.14u 0.32s 00:00:01.46 Elapsed: 00:00:01.25
# Mc/sec: 1139.33
//
Query:       MMETSP1174-20130828|306_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1174-20130828|310_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|309_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|312_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   13.7   0.8      0.006   13.4   0.5    1.1  1  TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter


Domain annotation for each model (and alignments):
>> TIGR01013  2a58: sodium-dependent inorganic phosphate (Pi) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   1.5e-06     0.006      33      74 ..      23      64 ..      14      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-06
  TIGR01013 33 ilildnplaslvigilvtvllqssststsivvgmvsaglllv 74
               i++l   + + +i+i + vl+ s +tst i vgm +++ +lv
  MMETSP1174-20130828|312_1 23 ISTLFLLWTASIIMIAAFVLYLSTTTSTTIKVGMKGISTGLV 64
               566667799*************************66554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 378.75
//
Query:       MMETSP1174-20130828|314_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|315_1  [L=1455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.22s 00:00:01.08 Elapsed: 00:00:00.82
# Mc/sec: 2342.00
//
Query:       MMETSP1174-20130828|313_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 251.60
//
Query:       MMETSP1174-20130828|320_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|329_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|340_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|344_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.8   3.0      0.037   11.7   2.1    1.0  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.1   9.1e-06     0.037     118     155 ..       3      40 ..       2      46 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.1e-06
  TIGR04032 118 avaavlavvvvaaVAvatvalaavavnpavdstpvaek 155
                a++av+ vvvv   A+ ++a+++v+v+  +++ +++++
  MMETSP1174-20130828|344_1   3 AAEAVMTVVVVEDIAAEAEAVMTVVVVEDIEYVASSSS 40 
                57899**********************97777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 172.60
//
Query:       MMETSP1174-20130828|347_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 259.72
//
Query:       MMETSP1174-20130828|354_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 223.65
//
Query:       MMETSP1174-20130828|366_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|369_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|370_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 225.35
//
Query:       MMETSP1174-20130828|370_2  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|371_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1129.67
//
Query:       MMETSP1174-20130828|375_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.57
# Mc/sec: 653.12
//
Query:       MMETSP1174-20130828|376_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.8   0.0      0.025   11.5   0.0    1.2  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
       0.22    9.5   7.8       0.33    8.9   0.1    3.5  4  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.2e-05     0.025      24      91 ..      13      82 ..       6     117 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.2e-05
  TIGR01037 24 kvealkliakegaGavvtksigleprkGyenPtivevkaGllnaiGLqnPgveef...leelkkvreevdt 91
                +ea  l++k+g G+++tk +g   r   +nPt +e+ a ++n +  +  g+ +f   l  + +++++ d+
  MMETSP1174-20130828|376_1 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL-ADMINEVDADGNGTIDFpefLTMMARKMKDTDS 82
               57888999***************************98.579999988877765550004455555555543 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.013        26       6      17 ..       1      12 [.       1      13 [. 0.86
   2 ?    0.7   0.0     0.062   1.3e+02      10      23 ..      44      57 ..      28      61 .. 0.82
   3 ?   -4.0   0.2       1.7   3.5e+03      11      15 ..      82      86 ..      77      88 .. 0.69
   4 ?    8.9   0.1   0.00016      0.33       3      21 ..     110     128 ..     108     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.013
  TIGR01639  6 lskkltkEelne 17
               ++++lt+E++ e
  MMETSP1174-20130828|376_1  1 MADQLTEEQIAE 12
               579*******87 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.062
  TIGR01639 10 ltkEelnelinsLd 23
                t+ el ++in+ d
  MMETSP1174-20130828|376_1 44 PTEAELADMINEVD 57
               58899999999865 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 1.7
  TIGR01639 11 tkEel 15
               ++Ee+
  MMETSP1174-20130828|376_1 82 SEEEI 86
               88988 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.00016
  TIGR01639   3 yndlskkltkEelnelins 21 
                 ++l  klt+Ee +e+i++
  MMETSP1174-20130828|376_1 110 MTNLGEKLTDEEVDEMIRE 128
                578999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 531.52
//
Query:       MMETSP1174-20130828|382_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 277.63
//
Query:       MMETSP1174-20130828|384_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 525.60
//
Query:       MMETSP1174-20130828|390_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|391_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|402_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|403_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 1803.07
//
Query:       MMETSP1174-20130828|413_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|418_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|419_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 430.03
//
Query:       MMETSP1174-20130828|425_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|429_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|433_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|435_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|438_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-176  584.9   0.2   1.8e-176  584.7   0.1    1.0  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.7e-56  189.5   0.1    2.7e-56  188.8   0.0    1.2  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    3.3e-44  149.3   0.1    4.5e-44  148.8   0.1    1.1  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    8.5e-41  137.7   0.5    3.2e-29   99.6   0.1    2.3  2  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
      2e-40  136.6   0.0      3e-40  136.0   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    1.7e-35  120.3   0.2    3.6e-20   69.8   0.0    2.1  2  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    4.7e-35  118.8   0.0    1.4e-34  117.3   0.0    1.7  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    5.5e-33  112.3   0.8    7.2e-33  111.9   0.5    1.1  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    3.8e-25   86.2   0.0    9.6e-25   84.8   0.0    1.5  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    2.3e-14   50.5   0.0    4.7e-14   49.5   0.0    1.4  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    6.1e-08   29.6   0.0    1.1e-06   25.5   0.0    2.0  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.7   0.1  4.9e-179  1.8e-176       2     421 ..      47     464 ..      46     466 .] 0.99

  Alignments for each domain:
  == domain 1    score: 584.7 bits;  conditional E-value: 4.9e-179
  TIGR00713   2 seklfeeakqvlpGGvnsPvRafkavkgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyGapteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGFRvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgsmlslffteeevtnfaeakksdtelfakffkellekGvylapsqfealFvsaaheeealektiealeevlk 421
                s+k+f+eak+v+pGGv+sPvRa+k+v+g+P+++ + kga+ +dvd+n+y+Dyv+++Gp i Gha+++v+ea++ ++++G+s+Gap+  e  lak++ie v+sve+vR++nsGtea m  +Rl R+ftgrdk+ikf+GcyhGhaD +Lv+agsg+atlglp+s+gvpe  +k+tlv++yndle+++++l+  ++e+a+vi+epv+gn g ++p++efle++relt+e+gall++Dev+tGFR+a+++aq+ +gv+pD++++Gk++ggGlPvga+ggr++ime++aP+G++yqaGtlsgnpla++aG++tl+ l++++ y++l++l++kl +g+ ++ +e+g +v   +++ m+++ffte +vt+f+ea +sdt +f ++++++le+Gvylapsq+ea F+s ah++e++ekti+a++ev++
  MMETSP1174-20130828|438_1  47 SAKIFAEAKEVMPGGVSSPVRAYKSVGGEPIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFGAPSALENVLAKMVIEAVPSVEMVRFTNSGTEACMGMLRLVRAFTGRDKVIKFNGCYHGHADGFLVQAGSGVATLGLPDSPGVPEGSTKDTLVAKYNDLESVKALLA--DHEVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGFRIAYGCAQAHFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMETVAPAGPMYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKEAGHAVCGGHISGMFGFFFTEGPVTCFEEASQSDTAKFGRWHRAMLERGVYLAPSQYEAGFMSLAHTDEDVEKTIAAAKEVFA 464
                6899****************************************************************************************************************************************************************************************9..67********************************************************************************************************************************************************************************************************************************996 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   7.3e-59   2.7e-56       7     314 ..      73     384 ..      68     414 .. 0.86

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 7.3e-59
  TIGR00707   7 arlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvels.aadrvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatgkpkykkdF..eplvp.....gvkyveyndiealkeaidde.taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvG...dHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkki 314
                +  ++++ r kga+ +Dv+  +Y+D+v+  + ++ GHa++++ eal+ q++k +  +       +  la+ ++e++  ++ v f+nsG+ea  + l+l+r +++     + k++ f+  +HG   g l  +g      +   +p vp     +   ++ynd+e++k++++d+ +aavi+Ep+ G++G +p+++efl+++rel+ e+++ll++DEv tG+ R     a++h+gv+PD+ t++k +ggG+P+ga   ++++ e++ +      + t  Gnpla++a+ ++le+++++   e+  +  + l++ + +  k+  
  MMETSP1174-20130828|438_1  73 GGEPIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFGA--PSALENVLAKMVIEAVpSVEMVRFTNSGTEACMGMLRLVRAFTG-----RDKVIKFNGCYHGHADGFLVQAGSGVATLGLpdSPGVPegstkDTLVAKYNDLESVKALLADHeVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMETVAPAgpmYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKEAG 384
                55789**********************************************9766665..455566789999998735679***********************.....9**************999988777666555411455552222245579**********998877**********************************************.*****************************************998742335799******************************99999999888777765 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.1   1.2e-46   4.5e-44      18     304 ..      76     365 ..      69     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: 148.8 bits;  conditional E-value: 1.2e-46
  TIGR03246  18 kfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdat.fadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrt.lftvsvG.Gqakys.edfaplpe....gikhaayndlealkalisdk.tcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvlkvG...thGttyGGnplacavaekvldlvntaelleGv 304
                +++ +r +G+  wd ++++y+d+ G    +  Gha  e+ eal+ q +k    g   + e+v  lak +++a    + v f+nsG+ea    l+l r ++       +++++ f+ ++hG +  f v +G G a     d   +pe    +   a+yndle++kal+ d+   avi+ep+ G++G +p++++fl+g+rel  +h+all+fdev tG  r+ +  a  ++Gvtpd+ t  k +GgG+p+Ga   ++++ ++++         t  Gnpla +   k l++++     e +
  MMETSP1174-20130828|438_1  76 PIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFGAPSALENV--LAKMVIEAVpSVEMVRFTNSGTEACMGMLRLVRAFTG------RDKVIKFNGCYHGHAdGFLVQAGsGVATLGlPDSPGVPEgstkDTLVAKYNDLESVKALLADHeVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMETVAPAgpmYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHL 365
                67889********************************************9999999999998..58999998725799*******************9863......4579*********973588888834444431344345541111555689*********9987526789*****************************************7.999999*****************************99999988754232467899***************99876555555 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.6e-12   5.9e-10      16     134 ..      76     189 ..      66     197 .. 0.84
   2 !   99.6   0.1   8.7e-32   3.2e-29     178     337 ..     216     380 ..     205     395 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.6e-12
  TIGR00700  16 rvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvvafsrgfhGrt 134
                +++  + +ga   dvd n+++d+ ++ +    Gh + +v+ea+  q+++ t  +f          la+ + +  P+ +     + nsG+ea    +++ r++tgr+ v+ f++++hG +
  MMETSP1174-20130828|438_1  76 PIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGT--SFGAPS-ALENVLAKMVIEAVPSVEMV--RFTNSGTEACMGMLRLVRAFTGRDKVIKFNGCYHGHA 189
                556678899**************************************9865..554432.23334777777777776654..599********************************75 PP

  == domain 2    score: 99.6 bits;  conditional E-value: 8.7e-32
  TIGR00700 178 ldd.elaaiealfvad..veaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapapGg...lGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielk 337
                ++d  +a  ++l  ++  ++ ++vaav+lePv G+ Gfi p++e+++ +++l  ehg +l+ dev tGf r     a  h++++Pd+ t+ k + +GlP+ +  Gr +i+++ ap g     Gt +GnPla++a   +l+i++++g  e  +++ + + + ++++ 
  MMETSP1174-20130828|438_1 216 TKDtLVAKYNDLESVKalLADHEVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMETVAPAGpmyQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAG 380
                4442556677776655558899***********************************************.77788999*********************************99987644358****************************9999888877776664 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0     8e-43     3e-40      20     330 ..      76     383 ..      64     395 .. 0.82

  Alignments for each domain:
  == domain 1    score: 136.0 bits;  conditional E-value: 8e-43
  TIGR01885  20 pvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaey.vtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpg...ehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkklkkei 330
                p+vl++ +Ga+ wdv++++y+d++ ++     Gh+  ++++al+ q qk t       +     +a++ +  +   ++v  +n+G+ea    ++l+r ++ + k i  +      a+g f  ++ + +++   p+s       ++++   +yn+le+++  l +  ++vaa+++eP+ G++G + p++++l+ +rel +++  ll+ de+ tG  r     a  h +v Pd+ ++Gk ++gG +Pv a  ++k++m t+ p        t +GnPla +  +++le+l+ +   e+ ++l ++l + + +  ke 
  MMETSP1174-20130828|438_1  76 PIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFG--APSALENVLAKMvIEAVPSVEMVRFTNSGTEACMGMLRLVRAFTGRDKVIKFNGCYHGHADG-FLVQAGSGVATLGLPDSPGVPEGSTKDTLVAKYNDLESVKALLAD--HEVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMETVAPAgpmYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKEA 383
                9***********************************************987533..22333334444404556678**********************99888877666555444443.33333333333333333333333344457889***********99..99*********************************************7.88888999***************9888.6***************9862325789**********************************999987776655 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   2.6e-16   9.8e-14      11     151 ..      63     198 ..      57     208 .. 0.85
   2 !   69.8   0.0   9.5e-23   3.6e-20     206     328 ..     238     363 ..     210     394 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 2.6e-16
  TIGR00709  11 esevrsy..vrklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGalaltGn 151
                 s vr+y  v + p+++ + kG + +dv+ ++y+d++   G    Gh ++ ++ +l   +++g         + l + +++ + + ++   +  +++ft  sG++a    l+l + +tGr +vi f g +hG + G l  +G 
  MMETSP1174-20130828|438_1  63 SSPVRAYksVGGEPIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFG---APSALENVLAKMVIEAVP---SVEMVRFT-NSGTEACMGMLRLVRAFTGRDKVIKFNGCYHGHADGFLVQAGS 198
                5789999444689*************************************************98654...455566666666666666...33457787.69**********************************9988876 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 9.5e-23
  TIGR00709 206 kpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikke.fdafqpae...htGtfrGnqlalatGlealeilkdenlak 328
                  aavile + G+ G +  s efl+ ire+t +++ ll++dev +G+ r     a  h G+ pdv  + k +GGglp+   + +k+  ++ +pa+    +Gt+ Gn la+++G+++leil+ +   +
  MMETSP1174-20130828|438_1 238 EVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGGLPVGAYGGRKDiMETVAPAGpmyQAGTLSGNPLAMTAGIKTLEILQRDGSYE 363
                469*******************************************9.666778999*********************9988887736889999855568*******************98775444 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   3.6e-37   1.4e-34      11     417 ..      73     462 ..      64     464 .. 0.79

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 3.6e-37
  TIGR00508  11 aepplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelke..lpkvkdvRvlGaigavelkeekel.......eerigekiqkkalekgvllRPlgnviylmppyiiteeeleklveaikea 417
                  +p++ ++ +g+y +d d+++++D +  w  a+ Gh+++e+ ea+++q++k       g   +    La+ ++e +p ++e v f++sG  a    l++   +      + ++k++++++ YHG   g +  +++++ +      l+++  vp  +++   ++   + + le++++ll++h  e+aa+i+EP+v g +G    s+e+L+ +rel++e++ ll++DE++tGf r     a  h gvtPD+ +++K + gG lp+ a   +++i+e++      + ++ + t +gnpla ++++++le+l+++   e++ +++++l +++ ++ +   ++v      G+ g + ++ +++        ++    + ++++le+gv+l P +    +m  ++ t+e++ek ++a ke+
  MMETSP1174-20130828|438_1  73 GGEPIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGT---SFGAPSALENVLAKMVIEAVP-SVEMVRFTNSGTEACMGMLRLVRAF------TGRDKVIKFNGCYHGHADGFLVQAGSGVAT----LGLPDSPGVPEGSTK---DTLVAKYNDLESVKALLADH--EVAAVILEPVV-GNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMETVAPA---GPMYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKeaGHAVCGGHISGMFGFFFTEGPVTCfeeasqsDTAKFGRWHRAMLERGVYLAPSQYEAGFM-SLAHTDEDVEKTIAAAKEV 462
                5689999******************************************98754...446666777789******997.689********98877666665544......45679**********999988666654433....356677777777643...34444567799******998..9********66.999*********************************.888889999*************99766.8**************9877...479999**********************************9999988765522455555566777666655555333221222223333456677777777777766666666.3666777777777666665 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.5   1.9e-35   7.2e-33      70     373 ..      88     386 ..      38     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 1.9e-35
  TIGR03372  70 vdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklakayqsprgkytfiaasgafhgkslgalsataksafrkpfmpllpgfrhvafgd.ieamlkalqeckk..tgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfs.vlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdl 373
                 d + ++y+d +g +g    gh n  v+ a+ +q+ k    s      l  +lak +    p  +    f+nsgte+    l+l +a+    g+   i  +g++hg++ g l   a s      +p  pg    +  d + a  ++l+ +k   +  +vaavilep+ g+ g i p +++l  +r+l  e gall++dev tg+ r     a  h +v pd+  + k +ggg +p+ga    ++++  v    p+ ++ t+ gnpla +a + t+++l  +   e  +   + l++g+ +  +e  + 
  MMETSP1174-20130828|438_1  88 WDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGT--SFGAPSALENVLAKMVIEAVPS-VEMVRFTNSGTEACMGMLRLVRAFT---GRDKVIKFNGCYHGHADGFLVQ-AGSGVATLGLPDSPGVPEGSTKDtLVAKYNDLESVKAllADHEVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMEtVAPAGPMYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKEAGHA 386
                478899****************************98875..66677899*******9999996.788899*****************96...55668999**********9964.6677777888889998776665526788888988886324668*********************************************8.778888999***************999.6*****99999886166789***********************99999888888888888888887777766555 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   2.6e-27   9.6e-25       7     331 ..      63     377 ..      60     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 2.6e-27
  TIGR02407   7 esevrsysr..sfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskreeagvsls.nvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpe.ldvwkPg...ehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerl 331
                 s vr+y      p v+++ kga+ +d+d+++y+d++ + G    Gh n+++ eal++ +++            a ++  +++ +++++       v+ft   Gt+a    l+l+r  tgr++v+ f  ++hG++ g l  +g+     +   ++s  v      + l  + ++l+ ++ ll d+       aavile v g+ G    s+e+l+ +++l+ eh+ ll+ d++ +G  r     +  + g++Pd+ ++ k i+G GlP+     +++ +++ +P+    ++Gt+ Gn la+ a+ ++le   +d ++e+  + +++ ++  l
  MMETSP1174-20130828|438_1  63 SSPVRAYKSvgGEPIVLDRVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEALTAQMQKGTSFG-------APSALENVLAKMVIEAVPSVEMVRFTN-SGTEACMGMLRLVRAFTGRDKVIKFNGCYHGHADGFLVQAGSGVATLGL--PDSpGVPEGSTKDTLVAKYNDLESVKALLADHE-----VAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGF-RIAYGCAQAHFGVTPDVTTMGKVIGG-GLPVGAYGGRKDiMETVAPAgpmYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGIL 377
                57788886522679******************************************99988754322.......333333455566666655556689986.7*************************************99998876554..33303333333444445679999999****975.....69*****************************************997.77777788899***************.****9887666624566655222799******************99888888776666666666555 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.3e-16   4.7e-14     212     368 ..     234     389 ..     213     404 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.3e-16
  TIGR03251 212 faeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGil..a.grrvdevadnvfkvssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvsn 368
                +   ++++aa+i+eP+ g+ G      efl+ +r+l+ eh allv+dev tG  ++    a  ++gv+Pdv ++Gk    +G+   a g r d +++   + +     t  Gn   m    + lei++++   ++  ++ ++l + + + ++e  ++v  
  MMETSP1174-20130828|438_1 234 L--ADHEVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGFRIAY-GCAQAHFGVTPDVTTMGKVIG-GGLPvgAyGGRKDIMETVAPAGPMYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDAGKEAGHAVCG 389
                4..4689**********************************************9874.457889***********9754.3332112245667666666778888999**************************************99999999988865 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.042        16      46     107 ..      81     143 ..      76     166 .. 0.76
   2 !   25.5   0.0     3e-09   1.1e-06     238     388 ..     227     379 ..     215     396 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.042
  TIGR00699  46 kslGnylvdvdGnvlldlyaqiasipiGynnPallk.vakspevatalinrPalGnfpskdla 107
                +  G y  dvd n+++d          G+ n ++l  ++++ +  t++    al n + k + 
  MMETSP1174-20130828|438_1  81 RVKGAYCWDVDENKYVDYVGTWGPAICGHANDEVLEaLTAQMQKGTSFGAPSALENVLAKMVI 143
                56799************9999988888987777665156677788888888888888877654 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 3e-09
  TIGR00699 238 leeveelikkyrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqta...Gyffhd....ealrPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleel 388
                le v+ l+ ++  +vaa+i+eP+  + G    s++f++++r++t  h+ + + dev tG   +   +   ++++   +d+ t+ k +  +   G + +     e + P+ p  q  t  G+P  +    + +e++++    e+  +  + l++g+++ 
  MMETSP1174-20130828|438_1 227 LESVKALLADH--EVAAVILEPVVGNSGFIPPSQEFLEGIRELTTEHGALLVFDEVMTGFRIA---YGCAQAHFGVTPDVTTMGKVIGGGlpvGAYGGRkdimETVAPAGPMYQAGTLSGNPLAMTAGIKTLEILQRDGSYEHLDRLTNKLINGILDA 379
                55666666655..69********************************************8654...33344455667899998887654333365655411223467888989999999999999888888999998888888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.77
# Mc/sec: 798.79
//
Query:       MMETSP1174-20130828|447_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|451_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 255.73
//
Query:       MMETSP1174-20130828|453_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|455_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|460_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|462_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|461_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|471_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.7   0.0       0.35    8.8   0.0    2.0  2  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   8.4e-05      0.35       8      28 ..      14      34 ..       8      45 .. 0.86
   2 ?    3.5   0.0    0.0035        15       9      23 ..      55      69 ..      47      70 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 8.4e-05
  TIGR01489  8 FDgTIieqdsddwivdkfgkk 28
               +D+TI  +d  +wi ++ +++
  MMETSP1174-20130828|471_1 14 YDNTIKVWDPSTWICQQTLQG 34
               8**************998776 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0035
  TIGR01489  9 DgTIieqdsddwivd 23
               D+TI  +d  +wi +
  MMETSP1174-20130828|471_1 55 DRTIKVWDPSTWICQ 69
               9************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|469_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   41.8   0.0    2.1e-11   41.3   0.0    1.2  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   5.1e-15   2.1e-11     111     296 ..      18     205 ..      12     223 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 5.1e-15
  TIGR00747 111 aCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDR.gtcv...lFgDGagavvvgeseeegeilsvelgadgekgellrlp.aaekraekekeekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvkt...vekygntsAasiplaldelleeg 296
                +Ca  + ++ v+ +yv+s   k +Lv  +e  s  + ++D  + ++   +F+DG +a+v+g  + +     +  +a  +++  l+   ++ ++ +    ++    +   k + ++ +++++  v++ l++ ++kked+d+   H    Riie +++ l l+ee+   +   +++ygn    s+   l+ +++e+
  MMETSP1174-20130828|469_1  18 GCAAAMNGFRVGMDYVRSH-EKAALVCCVEISSVHTTFDDNiNDAIlhaIFADGCAAAVLGGRTAKT--APTGSFAIVDDHAWLMEGtEDGITLS---INETGISCKLSKYLPQYIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSwevLDQYGNMLSPSVMFVLELVMKEH 205
                6899999999*******96.578999999999988877775333442337**********9877555..55555555565666655503333433...4444444555688999*************************************************98654222789********999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 849.01
//
Query:       MMETSP1174-20130828|475_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       296  (0.0721599); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|477_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|482_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 204.58
//
Query:       MMETSP1174-20130828|488_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 233.98
//
Query:       MMETSP1174-20130828|492_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|494_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|491_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|496_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|498_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1192.62
//
Query:       MMETSP1174-20130828|501_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|502_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|517_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|513_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|520_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 745.10
//
Query:       MMETSP1174-20130828|519_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.7e-119  395.0   1.0   7.7e-119  394.8   0.7    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
    5.6e-90  299.9   0.2    6.4e-90  299.7   0.2    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    4.4e-34  116.4   0.1    5.4e-34  116.0   0.1    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.1e-05   22.3   0.1      0.043   10.5   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      3e-05   20.8   0.0    5.7e-05   19.9   0.0    1.4  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0001   17.7   0.0    0.00013   17.3   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00016   18.9   0.0    0.00031   17.9   0.0    1.5  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00034   17.4   0.0       0.13    8.8   0.0    2.1  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    0.00052   16.5   0.0    0.00081   15.9   0.0    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.001   15.8   0.0     0.0016   15.2   0.0    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0021   14.9   0.0      0.012   12.4   0.0    1.9  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
     0.0033   13.9   0.1      0.016   11.7   0.0    1.9  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0076   12.9   0.0      0.015   12.0   0.0    1.4  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.009   12.2   0.0      0.012   11.8   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
  ------ inclusion threshold ------
      0.026   11.2   0.0      0.085    9.5   0.0    1.7  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
      0.027   11.0   0.1      0.044   10.3   0.0    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.046   10.3   0.0      0.062    9.9   0.0    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.8   0.7  3.2e-121  7.7e-119       2     243 ..      51     293 ..      50     295 .] 0.98

  Alignments for each domain:
  == domain 1    score: 394.8 bits;  conditional E-value: 3.2e-121
  TIGR02028   2 rvavvgggpagasaaetlaka.giqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmkvispsniavdigrtlkeheyigmvrrevldsflreraadagatlinglvlklelpedaddpytlhyveedktgasgtkktlevdavigadgansrvakeidagdydyaiafqerirlpdekmayyedlaemyvgddvspdfygwvfpkcdhvavgtgtvaakdeikklqagiraraa 243
                rvavvgggp+g++aae +a+   ++t+++erk+dn+kpcggaiplcmvdef+lp diidr+v+kmk+isp+n +vdig+tlk++eyigm+rrev+d +lr+ra + ga+ inglv+++e p+   d y+++y ++  +   gt ++levd+vigadgansrvak idag+y+yaiafqeri++ dekma+ye+laemyvgddvspdfygwvfpk+dhv vgtgtv++++ ik +q +ir+ra 
  MMETSP1174-20130828|519_1  51 RVAVVGGGPSGSCAAEIFAQNkDVDTWIIERKMDNCKPCGGAIPLCMVDEFNLPADIIDRKVRKMKMISPTNREVDIGQTLKPDEYIGMLRREVMDGYLRDRAIEFGAQPINGLVTEVEVPTADRDTYLIKYANYAGNKRVGTPEVLEVDIVIGADGANSRVAKAIDAGEYNYAIAFQERIKIDDEKMAFYEELAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVINRPGIKGYQKAIRERAG 293
                9******************86379****************************************************************************************************************999******************************************************************************************************96 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.7   0.2   2.7e-92   6.4e-90       1     239 [.      50     293 ..      50     295 .] 0.94

  Alignments for each domain:
  == domain 1    score: 299.7 bits;  conditional E-value: 2.7e-92
  TIGR02023   1 ydvlviGggpsGaaaaetLaka.gievillerelarikPCGGaiPlalieefdlPedlidrrvrkakvisPs..aveikvdlpveeeyvgmvrrevfDeyLreraqkaGaeliegllkklerded...kltleyrek..ekeageekksveadvviGaDGakskvakelglgknlkkvialqeriklpdeklkyyeeladvyldgevsPDfYgWvfPkgdhiavGvGtethktdikkllaalrrkag 239
                y+v+v+GggpsG+ aae+ a++ ++++ ++er+++++kPCGGaiPl++++ef+lP d+idr+vrk+k+isP+  +v+i ++l+  +ey+gm rrev+D yLr+ra + Ga+ i+gl++++e+++    ++ ++y ++  +k  g   + +e+d+viGaDGa+s+vak++++g +++++ia+qerik+ dek++ yeela++y++++vsPDfYgWvfPk dh+ vG+Gt++++  ik  ++a+r++ag
  MMETSP1174-20130828|519_1  50 YRVAVVGGGPSGSCAAEIFAQNkDVDTWIIERKMDNCKPCGGAIPLCMVDEFNLPADIIDRKVRKMKMISPTnrEVDIGQTLK-PDEYIGMLRREVMDGYLRDRAIEFGAQPINGLVTEVEVPTAdrdTYLIKYANYagNKRVGT-PEVLEVDIVIGADGANSRVAKAIDAG-EYNYAIAFQERIKIDDEKMAFYEELAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVINRPGIKGYQKAIRERAG 293
                89*****************9862689**********************************************8889999***9.99**********************************98654444999****9975455554.5559**********************.9***********************************************************************98 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.1   2.2e-36   5.4e-34       3     217 ..      52     276 ..      50     293 .. 0.83

  Alignments for each domain:
  == domain 1    score: 116.0 bits;  conditional E-value: 2.2e-36
  TIGR02032   3 vvvvGaGpaGssaAlrlak.kGlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveied............ekvkvevred..ekkevtakivigAdGakskvakklglkkekrelavalraeveeeveeevdedsvevyidkglvpggYgWvfPkgdgtanvGvgvls 217
                v vvG+Gp+Gs aA+  a+ k +++ ++e+k +   k+Cgga++   v+e++lp   i  +vrk ++isp++++v+i +    +e+  +++R+++D +L ++A e ga+   +  v++ve+              +    + ++   + + ++ +ivigAdGa+s+vak+++  + ++ +a++ r+++  e ++   e+ +e+y++++++p++YgWvfPk d+ + vG+g+  
  MMETSP1174-20130828|519_1  52 VAVVGGGPSGSCAAEIFAQnKDVDTWIIERK-MDNCKPCGGAIPLCMVDEFNLPADIIDRKVRKMKMISPTNREVDIGQTlkpDEYIGMLRREVMDGYLRDRAIEFGAQPI-NGLVTEVEVPTadrdtylikyanY----AGNKRvgTPEVLEVDIVIGADGANSRVAKAIDAGEYNYAIAFQERIKIDDE-KMAFYEELAEMYVGDDVSPDFYGWVFPKYDH-VGVGTGTVI 276
                78************98765289999****99.6667*******************99999************999998888889************************954.444444433333367888844432....33333434567999******************9988999999999999998.8889999***********************8.888887764 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00021     0.051       2      33 ..      52      83 ..      51     162 .. 0.89
   2 !   10.5   0.0   0.00018     0.043     149     172 ..     194     217 ..     164     240 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00021
  TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
               +++vGgG+ G+  A  +a+++d+++ ++e+k 
  MMETSP1174-20130828|519_1 52 VAVVGGGPSGSCAAEIFAQNKDVDTWIIERKM 83
               89**************************9874 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00018
  TIGR01988 149 getleakLlvgADGanSkvrqaag 172
                 e+le ++++gADGanS v++a+ 
  MMETSP1174-20130828|519_1 194 PEVLEVDIVIGADGANSRVAKAID 217
                467999*************99865 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.3e-07   5.7e-05     129     198 ..      45     120 ..      30     138 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.3e-07
  TIGR01316 129 apstkkkvaviGaGpaGlavaselakkGhevtvf..eal...hkp.GGvla.yGipefrlpkeivetevkklkklGv 198
                   +k +vav+G Gp+G ++a+e+  +  +v  +  e      kp GG +    + ef lp +i++ +v+k+k++  
  MMETSP1174-20130828|519_1  45 VVEAKYRVAVVGGGPSG-SCAAEIFAQNKDVDTWiiERKmdnCKPcGGAIPlCMVDEFNLPADIIDRKVRKMKMISP 120
                556899***********.67777777777776441253212235646666515689*****************9865 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.5e-07   0.00013     534     598 ..      46     116 ..      28     149 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.5e-07
  TIGR03315 534 ksekhkvaviGaGPaGlsagyflar.aGlpvtvfekkek....agGvvk.niiPefrisaeviqkdlelvk 598
                 + k +vav+G+GP+G +a+ ++a+ + ++  ++e+k +     gG +   ++ ef ++a++i++ +  +k
  MMETSP1174-20130828|519_1  46 VEAKYRVAVVGGGPSGSCAAEIFAQnKDVDTWIIERKMDnckpCGGAIPlCMVDEFNLPADIIDRKVRKMK 116
                46788***********98887666515788889999865222247777525788*********99875443 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06   0.00031      19      55 ..      47      84 ..      30      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-06
  TIGR00292 19 yaesDviivGaGpsGLtaayylakeg.lkvvvlerkla 55
                a+  v++vG+GpsG  aa ++a+++ + + ++erk+ 
  MMETSP1174-20130828|519_1 47 EAKYRVAVVGGGPSGSCAAEIFAQNKdVDTWIIERKMD 84
               456779******************999********985 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0028      0.68       2      33 ..      52      83 ..      51      89 .. 0.92
   2 !    8.8   0.0   0.00054      0.13     147     187 ..     195     232 ..     172     244 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0028
  TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaks 33
               v++vGgg++G+  A  ++++ ++++ +ie k 
  MMETSP1174-20130828|519_1 52 VAVVGGGPSGSCAAEIFAQNKDVDTWIIERKM 83
               89***************************875 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00054
  TIGR01984 147 qkleakLlvaAdGanskvreslsiaeeevdyeqtalianvk 187
                + le ++++ AdGans+v++++ +   e +y  +a+  ++k
  MMETSP1174-20130828|519_1 195 EVLEVDIVIGADGANSRVAKAIDAG--EYNY-AIAFQERIK 232
                468999*************987654..4455.344444444 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06   0.00081     203     245 ..      40      83 ..      28      87 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
  TIGR03140 203 aeeaeeekekydvlvvGgGPagaaaa.iyaarkGlkvalvaeri 245
                +++++   +ky v vvGgGP+g++aa i+a  k + + ++  ++
  MMETSP1174-20130828|519_1  40 ESQRMVVEAKYRVAVVGGGPSGSCAAeIFAQNKDVDTWIIERKM 83 
                4455556789************97666**********9998765 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.7e-06    0.0016     144     224 ..      50     135 ..      37     146 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.7e-06
  TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvt.vfere.dr...vGGllryG.iPnlkldkeiverridlleaeGvdfvtnveiGkdisaee 224
                 +vavvG GP+G  aa+ +++     t + er+ d    +GG +    + ++ l  +i++r++ +++    +   +v+iG+++ ++e
  MMETSP1174-20130828|519_1  50 YRVAVVGGGPSGSCAAEIFAQNKDVDTwIIERKmDNckpCGGAIPLCmVDEFNLPADIIDRKVRKMKMISPTN-REVDIGQTLKPDE 135
                68****************999876555366765354333799887652789***************9987665.5799999999887 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.27        65       2      23 ..      51      72 ..      50      84 .. 0.76
   2 !   12.4   0.0   4.9e-05     0.012     165     198 ..     192     223 ..     157     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.27
  TIGR01989  2 DvvivGgGlvGlalAaalkknp 23
                v++vGgG+ G   A  +++n+
  MMETSP1174-20130828|519_1 51 RVAVVGGGPSGSCAAEIFAQNK 72
               589********98776666655 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.9e-05
  TIGR01989 165 edgetlktklliGADGanSkvRkaanikvtgwnY 198
                 + e+l+++++iGADGanS v ka  i+   +nY
  MMETSP1174-20130828|519_1 192 GTPEVLEVDIVIGADGANSRVAKA--IDAGEYNY 223
                4558999************99876..66667777 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.4e-05     0.016     137     173 ..      45      82 ..      35     140 .. 0.72
   2 ?   -0.3   0.0      0.27        64     380     440 ..     192     253 ..     176     256 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.4e-05
  TIGR01318 137 vkktgkrvaviGaGpaGlacadvlara.Gvkvvvfdry 173
                v++ + rvav+G+Gp+G + a+++a++  v++ + +r 
  MMETSP1174-20130828|519_1  45 VVEAKYRVAVVGGGPSGSCAAEIFAQNkDVDTWIIERK 82 
                778899************999*9998724666666654 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.27
  TIGR01318 380 GseavleadvviiafGfephamewlaehg..ikldskGrivaaeeselayqtsnpkifaGGdi 440
                G+ +vle d+vi a G +++ ++ +++ +    +  + ri++++ +++a+  +   ++ G d+
  MMETSP1174-20130828|519_1 192 GTPEVLEVDIVIGADGANSRVAKAIDAGEynYAIAFQERIKIDD-EKMAFYEELAEMYVGDDV 253
                88899***********9999999887654114567788888884.455666667777777775 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.1e-05     0.015       1      35 [.      50      85 ..      50     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
  TIGR01292  1 ydviiiGaGpaGltaa.iYaaranlktlliegkeag 35
               y+v+++G+Gp+G  aa i+a+ ++++t +ie+k+ +
  MMETSP1174-20130828|519_1 50 YRVAVVGGGPSGSCAAeIFAQNKDVDTWIIERKMDN 85
               6799********87766**************98765 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     5e-05     0.012     377     423 ..      47      98 ..      24     135 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5e-05
  TIGR03997 377 rrrkkvlvvGgGPaGleaaataar.rGhrvtllereee....lGGqvklaak 423
                +++ +v vvGgGP+G  aa+  a+ +  +  ++er+       GG++ l++ 
  MMETSP1174-20130828|519_1  47 EAKYRVAVVGGGPSGSCAAEIFAQnKDVDTWIIERKMDnckpCGGAIPLCMV 98 
                33469***********999876651566777888875412225777777764 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00035     0.085       2      36 ..      49      84 ..      48      90 .. 0.86
   2 ?   -1.4   0.0      0.68   1.6e+02     142     169 ..     189     216 ..     159     223 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00035
  TIGR02360  2 ktqvaiigaGpsGlllgqll.hkaGidavilerksr 36
               k +va++g+GpsG   +++  +++ +d+ i+erk  
  MMETSP1174-20130828|519_1 49 KYRVAVVGGGPSGSCAAEIFaQNKDVDTWIIERKMD 84
               679************9998725689********965 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.68
  TIGR02360 142 ekdgeekrldcdfiaGcdGfhGvsrksi 169
                ++ g+ + l+ d ++G+dG      k+i
  MMETSP1174-20130828|519_1 189 KRVGTPEVLEVDIVIGADGANSRVAKAI 216
                45677788999*******9877666666 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018     0.044       2      33 ..      50      82 ..      49      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00018
  TIGR01350  2 ydvvviGgGpgGYvaAiraaqlg.lkvalveke 33
               y v v+GgGp+G  aA   aq++   + ++e++
  MMETSP1174-20130828|519_1 50 YRVAVVGGGPSGSCAAEIFAQNKdVDTWIIERK 82
               899*************99998763678888875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00026     0.062       1      30 [.      52      82 ..      52      87 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00026
  TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEkn 30
               v+++GgG++G  aA   a+ ++ +  ++E++
  MMETSP1174-20130828|519_1 52 VAVVGGGPSGSCAAEIFAQnKDVDTWIIERK 82
               79**********9987776467777788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.47
# Mc/sec: 828.44
//
Query:       MMETSP1174-20130828|527_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|533_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|535_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|538_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|537_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|543_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1174-20130828|544_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|545_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   23.7   0.0    5.5e-06   23.5   0.0    1.1  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.3e-09   5.5e-06     220     296 ..      41     120 ..      27     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.3e-09
  TIGR00747 220 lAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvkt...vekygntsAasiplaldelleeg 296
                + +++++  v++ l++ ++kked+d+   H    Riie +++ l l+ee+   +   +++ygn    s+   l+ +++e+
  MMETSP1174-20130828|545_1  41 YIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSwevLDQYGNMLSPSVMFVLELVMKEH 120
                5678999******************************************98654222789*********99988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1174-20130828|541_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-19   66.0   0.2    9.6e-19   65.6   0.1    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
      7e-13   46.4   0.0      9e-13   46.0   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.2e-11   40.8   0.0    5.4e-11   40.5   0.0    1.0  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.4e-10   36.8   0.0    4.4e-10   36.8   0.0    2.1  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      5e-10   36.3   0.0    6.4e-10   35.9   0.0    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.8e-07   27.9   0.0    3.8e-07   27.9   0.0    3.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    9.7e-05   19.1   0.0    0.00012   18.8   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1   1.6e-21   9.6e-19     218     295 ..      10      87 ..       3      94 .. 0.93

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.6e-21
  TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                ++ kL+v +l ++  E e  q+F  FG++e  ++ +D e+Grs+G+GFi+F da  a eA ++lN  e  GR+i v  
  MMETSP1174-20130828|541_1  10 GNPKLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDRESGRSRGFGFITFCDARDASEAVKELNESEFMGRTIFVVE 87 
                5679**********************************************************************8866 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.5e-15     9e-13     287     359 ..      13      86 ..       7      93 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.5e-15
  TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyva 359
                 l+v+ l+   ++ +  +lF++fG +  a++ ld e+++S+gFGF++f ++ +A++Av+el+   + g+ ++v 
  MMETSP1174-20130828|541_1  13 KLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDrESGRSRGFGFITFCDARDASEAVKELNESEFMGRTIFVV 86 
                699******************************9999*************************999999998885 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   9.2e-14   5.4e-11      91     155 ..      13      77 ..       6      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 9.2e-14
  TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGtt 155
                 l+v Gl      +e+e+lfs+fG++  +ri  d+ ++ s+G Gfi f    +a +a+k+ln + 
  MMETSP1174-20130828|541_1  13 KLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDRESGRSRGFGFITFCDARDASEAVKELNESE 77 
                58999999999999999999999999999999999999999999999999999999999999775 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   7.4e-13   4.4e-10      60     124 ..      13      78 ..       5      90 .. 0.90
   2 ?  -14.5  10.0         7   4.1e+03     370     404 ..     165     196 ..     151     210 .. 0.55
   3 ?  -11.2   6.4         7   4.1e+03     379     393 ..     209     223 ..     183     232 .. 0.49

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 7.4e-13
  TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyei 124
                 +fv  +  d  e e+  lf k G++ e r+ +d  +G+ rG+ f+tfc+ ++a eavkeln+ e 
  MMETSP1174-20130828|541_1  13 KLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDrESGRSRGFGFITFCDARDASEAVKELNESEF 78 
                579999999*************************899*************************9986 PP

  == domain 2    score: -14.5 bits;  conditional E-value: 7
  TIGR01648 370 grgrgaagsraaGvrGlglrGyeayrglysgyhek 404
                grg g+  sr  G++G g+    +y g + gy+ +
  MMETSP1174-20130828|541_1 165 GRGGGGYESRDGGGYGGGGS---SYGGGGGGYESR 196
                34444444555555444333...333334444444 PP

  == domain 3    score: -11.2 bits;  conditional E-value: 7
  TIGR01648 379 raaGvrGlglrGyea 393
                  +G++G g++Gy+ 
  MMETSP1174-20130828|541_1 209 GGSGGYGGGSGGYSG 223
                123444444444444 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.1e-12   6.4e-10     294     369 ..       9      84 ..       2      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.1e-12
  TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLn 369
                 ++ kl++ +L +d ++    +L  +FG L    +  d++ G s+G++F+ + d+ ++  A++ Ln  +  ++++ 
  MMETSP1174-20130828|541_1   9 GGNPKLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDRESGRSRGFGFITFCDARDASEAVKELNESEFMGRTIF 84 
                3567**************************************************************9887776654 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.5e-10   3.8e-07     102     184 ..       6      88 ..       1      96 [. 0.81
   2 ?  -17.3  12.7         7   4.1e+03     292     292 ..     202     202 ..     152     234 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.5e-10
  TIGR01659 102 dtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsya 184
                +++  +  l v  l  d ++ e+  lf   g ++  ri  d  +g s g++f+ f+   d+  a+k+ln      + + v  +
  MMETSP1174-20130828|541_1   6 GSDGGNPKLFVRGLNYDTQESEFEQLFSKFGRLEEARIALDRESGRSRGFGFITFCDARDASEAVKELNESEFMGRTIFVVES 88 
                33344567999999999999999999999999999999999999999999999999999999999999987666666665555 PP

  == domain 2    score: -17.3 bits;  conditional E-value: 7
  TIGR01659 292 y 292
                 
  MMETSP1174-20130828|541_1 202 S 202
                1 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.1e-07   0.00012     206     270 ..      17      81 ..      11      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.1e-07
  TIGR01645 206 asvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGq 270
                  +  d  e +   +f  fG++ + ++a +  +++ +GfGf+ f +++  sea+  +n  ++ G+
  MMETSP1174-20130828|541_1  17 RGLNYDTQESEFEQLFSKFGRLEEARIALDRESGRSRGFGFITFCDARDASEAVKELNESEFMGR 81 
                556778899999*******************************************9997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 695.14
//
Query:       MMETSP1174-20130828|546_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1174-20130828|536_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 910.39
//
Query:       MMETSP1174-20130828|548_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 613.75
//
Query:       MMETSP1174-20130828|556_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|558_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|559_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|564_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 161.99
//
Query:       MMETSP1174-20130828|562_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.71
# Mc/sec: 1459.32
//
Query:       MMETSP1174-20130828|566_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|561_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.23s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 941.76
//
Query:       MMETSP1174-20130828|569_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|567_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04    9.4  36.7      0.043    9.3  25.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  25.5   1.1e-05     0.043     676     858 ..       3     191 ..       1     194 [] 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.1e-05
  TIGR02169 676 klerlrerle.eLereleslqselrriekrld...elssklsdaekkieeiekeleqleeeeeklkerleeleekl.seleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeie 858
                ++ +++++le +L ++ ++ ++e++ ++k+l+   +++++l+++++++ e +  +e+l++ +ek+k+++++ + ++ ++++ee +++++el++  a+i+  + ++++lke+le+ + +l  e+ e++e+ + + e+  + +ea le++  e ++ + ++k+l++++ ++ ++   e+++q +++++  e
  MMETSP1174-20130828|567_1   3 EVDKMQKQLEdDLVASASKHAEEKSDLNKELEtlrAVKEQLEKEKQSHVETHGTIEKLKALHEKEKREAADGHFEImESTQEEHAAAQKELEDTVARIAGEKDAMNALKEKLEKEKLDLLAEHGENMESAIADREAAEKLLEAELEKLRLEKDEVDkMQKQLEDDRLKDYVAILLEMKSQLDKEKQIYE 191
                555555555424666666666666666665541115677899999999999999999999999999999998876526788889999999999999999999999999999999999999999999999999999999999999999988888887789999999999999999999999888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       653  (0.159191); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|573_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 140.24
//
Query:       MMETSP1174-20130828|570_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|574_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 864.95
//
Query:       MMETSP1174-20130828|575_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|577_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.65
# Mc/sec: 534.05
//
Query:       MMETSP1174-20130828|576_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1385.89
//
Query:       MMETSP1174-20130828|578_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|572_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 1338.10
//
Query:       MMETSP1174-20130828|583_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1041.77
//
Query:       MMETSP1174-20130828|582_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-48  162.3   3.0    3.8e-48  162.2   2.1    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.8e-46  156.2   2.5      3e-46  156.0   1.8    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-40  136.9   1.6    1.8e-40  136.7   1.1    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.9e-39  131.7   1.0    6.5e-39  131.6   0.7    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    7.4e-38  128.3   2.1    8.2e-38  128.1   1.5    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-36  124.0   1.3    1.3e-36  123.9   0.9    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.3e-35  118.1   1.2    9.7e-35  118.0   0.8    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      1e-28   97.9   1.0    1.2e-28   97.6   0.7    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.9e-28   97.2   0.3    2.1e-28   97.1   0.2    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.2e-26   89.4   0.6    4.6e-26   89.3   0.4    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.1e-23   79.6   0.8    5.8e-23   79.4   0.6    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.1e-22   78.3   0.8    1.3e-22   78.1   0.6    1.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.5e-22   77.3   0.2    2.8e-22   77.1   0.1    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.4e-21   73.7   0.6    4.4e-21   73.3   0.4    1.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.5e-20   70.6   0.1    2.9e-20   70.4   0.1    1.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.6e-20   70.7   0.5    2.8e-20   70.6   0.4    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.4e-20   70.3   0.2      4e-20   70.0   0.2    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.6e-20   68.5   0.1    5.2e-20   68.4   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      7e-20   69.3   0.6    7.7e-20   69.2   0.4    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-19   68.5   0.2    1.3e-19   68.4   0.2    1.0  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.2e-19   67.5   0.2    2.5e-19   67.3   0.2    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.3e-19   67.6   0.5    2.7e-19   67.4   0.3    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    9.7e-19   65.7   1.6    1.2e-18   65.3   1.1    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.1e-18   65.5   0.3    1.3e-18   65.2   0.2    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.5e-18   65.0   0.1    1.7e-18   64.9   0.1    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.4e-18   64.4   0.2      3e-18   64.1   0.1    1.1  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.5e-18   63.2   0.4    6.5e-18   63.0   0.3    1.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      6e-18   62.8   0.4    7.1e-18   62.6   0.3    1.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.5e-17   61.6   0.5    1.8e-17   61.4   0.3    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.7e-17   61.4   0.7    2.4e-17   60.9   0.5    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      7e-17   59.0   0.1    8.3e-17   58.8   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    2.7e-16   57.3   0.3    3.1e-16   57.1   0.2    1.0  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.8e-16   57.3   0.1    4.6e-16   57.0   0.1    1.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-15   55.1   0.6    1.3e-15   54.9   0.4    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.1e-15   55.0   0.2    1.3e-15   54.8   0.1    1.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.2e-15   55.3   0.4    1.5e-15   55.0   0.3    1.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.2e-15   54.6   0.3    2.8e-15   54.2   0.2    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.9e-15   53.3   0.3    7.5e-15   53.0   0.2    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.8e-15   52.8   0.1      9e-15   52.6   0.1    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
      8e-15   51.2   0.0    8.9e-15   51.0   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.7e-14   51.2   0.3    3.1e-14   51.0   0.2    1.0  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.4e-14   50.0   0.3    8.2e-14   49.7   0.2    1.1  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.3e-13   45.6   0.1    1.1e-12   45.4   0.1    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.3e-12   45.4   0.5      2e-12   44.8   0.3    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.3e-12   43.6   0.3    6.2e-12   43.4   0.2    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.2e-12   43.3   0.1    8.8e-12   43.0   0.0    1.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.6e-11   41.3   0.1    3.3e-11   40.9   0.1    1.2  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.6e-11   41.0   0.3    4.6e-11   40.7   0.2    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.5e-10   38.1   0.1      3e-10   37.8   0.1    1.0  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.4e-10   37.7   0.2    4.8e-10   37.3   0.1    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.8e-10   36.3   0.4    5.8e-10   36.0   0.3    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.8e-10   36.0   0.0    6.9e-10   35.9   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    9.7e-10   33.7   0.0    9.7e-10   33.7   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    2.3e-09   33.2   0.1    2.4e-09   33.2   0.1    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.4e-08   31.5   0.0    1.6e-08   31.3   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.4e-07   28.3   0.0    1.8e-07   27.9   0.0    1.0  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.3e-06   23.9   0.2    2.6e-06   23.7   0.1    1.2  1  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   2.1   5.2e-50   3.8e-48     465     569 ..       1     108 [.       1     111 [. 0.93

  Alignments for each domain:
  == domain 1    score: 162.2 bits;  conditional E-value: 5.2e-50
  TIGR02203 465 GengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk..gRttlviahRLstiekaDrivvlddGkiverGtheeLlarnG.lYasLhkiq 569
                Ge+g +LsGGq+qR+aiaRa++kd  iL+LDeatsaLD+eseR vqaaL++lmk   Rtt+++ahRLst+ +aD i v+ dG+ive+Gth+eL++++G  Y +L + q
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEGgNYRRLVNQQ 108
                899**************************************************733699***********************************99853899998876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   1.8   4.2e-48     3e-46     471     575 ..       1     108 [.       1     109 [. 0.94

  Alignments for each domain:
  == domain 1    score: 156.0 bits;  conditional E-value: 4.2e-48
  TIGR02204 471 GergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLiak.ggLyarlarLq 575
                Gerg++LsGGqkqriaiara++kd  iL+LdeatsaLd+ese+ vq al++lmk   rtt+++ahrL+tv++ad i+v+ +GriveqGth+eL++k gg y+rl++ q
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKeGGNYRRLVNQQ 108
                9****************************************************732589***********************************752789****9866 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   1.1   2.5e-42   1.8e-40     588     693 ..       1     109 [.       1     110 [. 0.95

  Alignments for each domain:
  == domain 1    score: 136.7 bits;  conditional E-value: 2.5e-42
  TIGR01846 588 gekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                ge+G +lsGGq+qria+ara++++P il+ldeatsald ese++++  l+++   k rt i++ahrlstv +ad i v+ +G+ive+G+h+el++k +g+y +l +qq 
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKeGGNYRRLVNQQR 109
                69************************************************996226799***********************************98689******9995 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.7   9.1e-41   6.5e-39     612     711 .]       1     105 [.       1     105 [. 0.95

  Alignments for each domain:
  == domain 1    score: 131.6 bits;  conditional E-value: 9.1e-41
  TIGR00958 612 gekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711
                ge+G qlsgGqkqriAiARA++++P++L+LDeAtSALD+e+e+++q+     ++ak rt +++ahrLstv +ad i+v+  g++ve+Gth++L+eke+  y++lv
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAaldnLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEGgNYRRLV 105
                89*************************************88888776666699*******************************************998999987 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   1.5   1.1e-39   8.2e-38     584     685 ..       2     108 ..       1     109 [. 0.90

  Alignments for each domain:
  == domain 1    score: 128.1 bits;  conditional E-value: 1.1e-39
  TIGR03797 584 egggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv....tRiviAHRLSTirnadrilvleeGrvveqGsyeeLlake.GlfaelarRQ 685
                e g +lSGGQ+QR+ iAra+++ P il++DEATSALD ++ +iV ++l++l      t i++AHRLST++nad i v+ +Gr+veqG+++eL++ke G + +l++ Q
  MMETSP1174-20130828|582_1   2 ERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaktrTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEgGNYRRLVNQQ 108
                56789*******************************************99853232266999*******************************97626899999988 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.9   1.9e-38   1.3e-36     611     709 ..       2     105 ..       1     106 [. 0.90

  Alignments for each domain:
  == domain 1    score: 123.9 bits;  conditional E-value: 1.9e-38
  TIGR03796 611 egganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709
                e g  lsGGq+qR+ iARa++k+P+iL+lDEatsaLD+e E++++++l    + +  t+i+vaHRLst+ ++d i v+  G++ve+GtH+el++ ++g Y+rL+
  MMETSP1174-20130828|582_1   2 ERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALdnlmKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEkEGGNYRRLV 105
                67999*************************************997553222377999************************************956789***98 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.8   1.3e-36   9.7e-35     466     568 ..       1     106 [.       1     114 [] 0.90

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 1.3e-36
  TIGR01192 466 gergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdg.rfakllr 568
                gerg +lsgg++qr+aiara++k+  il+ldeatsald e+e  v++a+d l   k rtt+++ahrlstv +ad +  + +gr++e+g+ +el++k+g ++ +l++
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEGgNYRRLVN 106
                8*************************************************997225799***********************************998615555554 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.7   1.7e-30   1.2e-28     598     691 ..       1      96 [.       1     100 [. 0.96

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 1.7e-30
  TIGR03375 598 gerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                gerG +LSgGQ+q +a+aRa++kdp il+LDE tsalD++se+ +  +L +l++   +T ++v+Hr s +  +d i v+ +Griv +G+++e++e+
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEK 96 
                69**************************************************9977889*********************************9987 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.2   2.9e-30   2.1e-28     608     707 ..       3     106 ..       1     107 [. 0.91

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 2.9e-30
  TIGR01193 608 eassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellken.Gfyaslih 707
                 + ++sgGqkqr+a+ara++ d  +l+lde+ts ld   e+ +   ++nl+k k +t i+vahrls   ++d i v+ +G+i+eqG+h+el++++ G y++l++
  MMETSP1174-20130828|582_1   3 RGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVqaaLDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEgGNYRRLVN 106
                5789*********************************99975433489********************************************875268999986 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.4   6.4e-28   4.6e-26     449     542 ..       1      95 [.       1      97 [. 0.95

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 6.4e-28
  TIGR01842 449 gegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                ge+G +LsgGq+qRia+aRa+  dP++++LDe  + LD+e e  + +al +l ka+ +t+++++hr s +  +d i+v+ dG++ + G+++e+++
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVE 95 
                799**********************************************986488899********************************99876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.6   8.1e-25   5.8e-23     453     528 ..       1      78 [.       1      79 [. 0.96

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 8.1e-25
  TIGR02857 453 GergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528
                Gerg +LSgGq+qR+a+Ara ++d  +l+lDE t++LD+e+e  v++al++l+  ++rt+++vaHrl+++ +ad i v
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAV 78 
                89**************************************************9777899***************9976 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.6   1.8e-24   1.3e-22      97     191 ..       3      96 ..       1     103 [. 0.93

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 1.8e-24
  TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                + +qlsGGq+qr+a+arav+k P iL+lDe+ saLD +    +q  l +l +    t+++v+h  +  +  +d iav+ +G+i+  g+ +e+ e+
  MMETSP1174-20130828|582_1   3 RGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQELVEK 96 
                568************************************************************988776.59******************99886 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.1     4e-24   2.8e-22     141     233 ..       3      96 ..       1     103 [. 0.91

  Alignments for each domain:
  == domain 1    score: 77.1 bits;  conditional E-value: 4e-24
  TIGR00972 141 salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 +++LsGGq+qr++iara+  +P +l+lDe tsaLD+++ + +++ +++L k    t ++v h ++  +  +d +a++++G++ve+g+ ++++ek
  MMETSP1174-20130828|582_1   3 RGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAktRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEK 96 
                5789*********************************************976534789*******97765.8******************99987 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.4   6.1e-23   4.4e-21     134     225 ..       6      96 ..       4     101 .. 0.94

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 6.1e-23
  TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225
                qlsGGq+qr+a+ara++  P +L+LDe  saLD+     ++  l +l +    ttimv+h     +  aD i+v+ +g+i   gt +e+ e+
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQELVEK 96 
                9***********************************************************988766.59******************99765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.1     4e-22   2.9e-20     145     237 ..       5      96 ..       2     106 .. 0.94

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 4e-22
  TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                 qlsGGqkqr+aiara+   p +l++de+tsald e    v + l +l + +  t ++v+h++    + ad +   + G+ive+G  +e+ +k
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEK 96 
                69***********************************999***********************98876.9******************99876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.4   3.9e-22   2.8e-20     124     226 ..       6     108 ..       2     114 .] 0.90

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 3.9e-22
  TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrd 226
                ++sgG+++r+ +a+++i++P +l LDE t+ LD+++ r++   +++l k+   t+++ +h l  + + ad +a++  G+i+ ++t +eL e+ g++  ++++++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAHRLSTV-MNADSIAVVYDGRIVEQGTHQELVEKEGGNYRRLVNQQ 108
                68********************************************98886889********998.669*********************99999887765554 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.2   5.6e-22     4e-20     129     226 ..       6     102 ..       3     112 .. 0.93

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 5.6e-22
  TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyv 226
                +lsGG++qr+ +ara+  +P +l++dea sald      +q  l +l k   +t ++++h l   +  +d i+++ +G iv  Gt +e+++    +y 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKEGGNYR 102
                8*************************************************************99886.9********************998887774 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   7.2e-22   5.2e-20     755     856 ..       1     101 [.       1     113 [. 0.89

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 7.2e-22
  TIGR00957 755 gekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelldrdgafa 856
                ge+g++lsggqkqr+++arav  d  i +ld+  sa+d+     i +  +      k++t i+v+h +s + ++d i v+ dg+i e g++qel++++g   
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSES-ERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEGGNY 101
                8**************************************86.56888888776666777779***********************************99754 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.4   1.1e-21   7.7e-20     131     225 ..       5      99 ..       1     110 [. 0.94

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 1.1e-21
  TIGR03864 131 reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeada 225
                 +L+GG+++r+ iara++ +P++L+lDeat  LD es + +++++ +l++++  + +   h +  v ++d++ v+  G+++ qG+ +el++++++
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKEGG 99 
                58***************************************************************************************998875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.2   1.8e-21   1.3e-19     125     223 ..       6     103 ..       3     110 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 1.8e-21
  TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettr 223
                +lsGG  qR+ ia a++ ++++l+ De t++lD  ++  v   l++l++ +  + ++++h l+ v + ad +av+ +G+ive+gt +el+++   ++ r
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKEGGNYRR 103
                8**************************************************************9976.9*******************99987766654 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.2   3.5e-21   2.5e-19     140     229 ..       6      94 ..       3     107 .. 0.94

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 3.5e-21
  TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229
                +lsggqkqr+aiara+  +p +l+ deatsald  + + +   l ++ +  + t ++++h +  v +  d++av+ +g+++e+gt  e+ 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELV 94 
                69*************************************************************9986.79***************99876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.3   3.8e-21   2.7e-19     142     236 ..       3      96 ..       1     100 [. 0.95

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 3.8e-21
  TIGR02315 142 radqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldde 236
                r  qLsGGq+qR+aiaRa++++p++++ DE +++LD +s ++v  +l ++ k k  t+i+  H+++ +++ ad i  + +g+iv +g+ +el ++
  MMETSP1174-20130828|582_1   3 RGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEK 96 
                6679**************************************************************9987.999*************99998765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   1.1   1.7e-20   1.2e-18     141     219 ..       6      84 ..       2      85 .. 0.95

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 1.7e-20
  TIGR02982 141 dlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                +lsgGqkqr+aiara+++ P +++ de t+ald++s r v   l +l + ++ t ++v+h    +  ad i  + dG++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRI 84 
                8***********************************************************9988888999999999987 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.2   1.8e-20   1.3e-18     130     222 ..       6      97 ..       2     105 .. 0.95

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 1.8e-20
  TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydep 222
                qlsGGq+qr+a+ara+  +p +l+lde  +ald++  + ++a l +l +    tt++v+h  +  ++ ad i+v+ +G+i + g+ +e+ ++ 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKE 97 
                9*************************************************************99997.9*******************98875 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.1   2.3e-20   1.7e-18     131     223 ..       6      97 ..       2     112 .. 0.92

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 2.3e-20
  TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                +LsGG kqR+ai+RA++ +P +L++De  +aLD+++ + +   L++l +  +   ++v+H l+ v   ad + v+ dGr+  +g+ +e+++++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKE 97 
                7************************************************99999**********987.9*******************99876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   4.1e-20     3e-18     128     211 ..       6      88 ..       3      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 4.1e-20
  TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                +lsGGq+qr+a+ar ++++  il+lde  sald    + + a + +l + k +t ++v+h+ls ++  a+ ++vv dG+i  ++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQG 88 
                8*************************************************************9876.5899********98765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.3     9e-20   6.5e-18     149     240 ..       5      95 ..       2     108 .. 0.90

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 9e-20
  TIGR02769 149 rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaells 240
                 qlsGGq qri+iara+  +P +++ldea s ld      + + l +l ++   + ++++h l+ v + a+ ++v+ +G+ive+ +  el+ 
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVE 95 
                59***************************************************************986.899***********987776655 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.3   9.9e-20   7.1e-18     137     230 ..       5      96 ..       2     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 9.9e-20
  TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyda 230
                 qlsGGq+qr+a+ara++ +p +l+lde  sald++    v+  l +l +     t+ +v+h r  +++ ad i ++ +G+++++G+ ++l ++
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTI-MVAH-RLSTVMNADSIAVVYDGRIVEQGTHQELVEK 96 
                59**********************************************998877665.6888.5677889********************9876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.3   2.5e-19   1.8e-17     128     222 ..       3      96 ..       1     101 [. 0.95

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 2.5e-19
  TIGR03410 128 rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldee 222
                rg +LsGGq+q +aiaRa++++P +l+LDe t  +     + +++++++l k k  + ++v + l+ +++ ad+++v+  G++v++g+++el e+
  MMETSP1174-20130828|582_1   3 RGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEK 96 
                7889**********************************9999************************9999.9****************9998765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.5   3.4e-19   2.4e-17     134     203 ..       6      76 ..       2      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 3.4e-19
  TIGR03608 134 elsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtHdpevaekadrv 203
                +lsgG+kqR+a+ar+++k++++++ DE t++LD++++ +v + l++l + + +t i+v H  +   +ad +
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLSTVMNADSI 76 
                8*******************************************997552789*******99998888876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.2e-18   8.3e-17     166     256 ..       6      95 ..       1      96 [. 0.90

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.2e-18
  TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspeeavk 256
                 lSgG+++R+a+a  +++dP++L++DE Ts LDs s   v  +L +l + k +t i++ H  s  ++ + d i ++ +Gr+v +G+ +e+v+
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLST-VM-NADSIAVVYDGRIVEQGTHQELVE 95 
                59**********************************999999***997537899******9775.44.56*****************99985 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.2   4.3e-18   3.1e-16     164     260 ..       6     101 ..       2     109 .. 0.93

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 4.3e-18
  TIGR03415 164 elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaney 260
                +lsGG +qr+ +ara+  +  il++de  sald      +q  l +l k   +t ++v+h l   +   + ia++ +Griv +gt +e+v k   +y
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKEGGNY 101
                69*************************************************************9998.578*******************9988887 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   6.4e-18   4.6e-16     113     202 ..       6      96 ..       2     105 .. 0.92

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 6.4e-18
  TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelageg.tailmtthdlaeavatcdrvvllngrvvadgapdqlqda 202
                +lsGGq+qr+ +ara+  +p++l+lde  + ld  s+  +   + +l +++ ++ +m++h l+  +++ +  v+ +gr+v +g+ ++l + 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKtRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEK 96 
                8**************************************9999999987651689******************************999775 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.4   1.8e-17   1.3e-15     466     530 .]       1      67 [.       1      67 [. 0.85

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.8e-17
  TIGR02868 466 geggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvthrl 530
                ge+g +lSGG++qR+a+ARa+++d  +l+LDE t  LD e e+ + ++L + ++ +t  +++v+hrl
  MMETSP1174-20130828|582_1   1 GERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTrtTIMVAHRL 67 
                689*************************************99877777764444433339*****86 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.1   1.8e-17   1.3e-15     168     259 ..       6      96 ..       3     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.8e-17
  TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvak 259
                +lsGG+kqr+ +ar ++k+p +l+ de t +ld ++  +v  al + +k++  + ++ +h    + +    a ++ +G ive+G+ +e+v+k
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIA-VVYDGRIVEQGTHQELVEK 96 
                69*************************************************999999999777666655555.5678***********9987 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.3     2e-17   1.5e-15     137     225 ..       6      94 ..       2      98 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2e-17
  TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                 lsGG++qr+ +ara+ ++P++l+lde t  ld ++   + a++ +l+ a+  t+++  h l+   + +d + v+  Gr+v  G+ +e++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHRLSTV-MNADSIAVVYDGRIVEQGTHQELV 94 
                59**********************************99999999999844455777778***975.578***************998876 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.2     4e-17   2.8e-15     141     220 ..       6      85 ..       2      86 .. 0.95

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 4e-17
  TIGR02211 141 elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                +lsGG++qr+aiara++++P++++ de t+ ld+++ +++   l +l k+k  + ++v+h l+ + ++d    ++dg+++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIV 85 
                79************************************************************************999986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.2     1e-16   7.5e-15     136     202 ..       5      72 ..       2      83 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1e-16
  TIGR02673 136 eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelver 202
                 +lsgG +qR+aiaRa++++P++l+ De t  lD+e ++ + + l +l k+   t i+++h  + v +
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAHRLSTVMN 72 
                69**********************************99999999998876515577888888776655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.1   1.2e-16     9e-15     145     231 ..       7      92 ..       3     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.2e-16
  TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdvel 231
                 sGG k+r  i +  + +P++ +LDe+ s lD ++ +iv + +++l +  ++++++++h  rl   ++ d + v++dGriv++G  + 
  MMETSP1174-20130828|582_1   7 LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAH--RLSTVMNADSIAVVYDGRIVEQGTHQE 92 
                69*****************************************9987764788899998..89999******************8653 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.2e-16   8.9e-15     544     638 ..       2      97 ..       1     109 [. 0.92

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 1.2e-16
  TIGR01271 544 eggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktr..ilvtsklehlkkadkilllhegscyfygtfselqakk 638
                e gi lsggq+ ri++arav kd  + +ld   s ld  +e+ i ++ l  l+ +ktr  i+v+ +l  + +ad i ++++g     gt  el +k+
  MMETSP1174-20130828|582_1   2 ERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESER-IVQAALDNLMKAKTRttIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQELVEKE 97 
                78***********************************99886.999*********9987789******************************98876 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.2   4.3e-16   3.1e-14     113     197 ..       5      88 ..       2     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 4.3e-16
  TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 qlsgg kqr+aiara+   p +l+lde   ald+ +   +q  l ++++ ++ t++mv+h +  +++ +d + ++ +g   + g
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLS-TVMNADSIAVVYDGRIVEQG 88 
                69***********************************************************996.67889999988888766555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.2   1.1e-15   8.2e-14     137     203 ..       5      73 ..       2      84 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.1e-15
  TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt.tvlvathd.enlves 203
                +qlsgG++qr+aiarav+++P++l+ de t+ ld+e  r +   l+++ +a t t ++ +h   ++++ 
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTrTTIMVAHRlSTVMNA 73 
                79**********************************999999999998765432556666650445444 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   1.5e-14   1.1e-12     134     227 ..       5      98 ..       2     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 1.5e-14
  TIGR01288 134 adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqi 227
                 +lsgg k+r+++ara+i+dp +l+lde t+ ld  +  ++   l  l+ a+ +t ++ +h +       d + v+  gr + +g  + l++++ 
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQELVEKEG 98 
                58*******************************************9987589999999999998764.58**********999999999998765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.3   2.8e-14     2e-12     127     186 ..       6      66 ..       2      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 2.8e-14
  TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.eeGktvvisthd 186
                +lsgG+k+r+aia av+  p +l+lde t+ ld++ ++ + ++l++l  ++ +t ++ +h 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHR 66 
                79********************************************861567788998885 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.2   8.6e-14   6.2e-12     133     223 ..       6      97 ..       3     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 8.6e-14
  TIGR03522 133 alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthimqevealcdrviiinkGkivadkkleelkaae 223
                +ls G +qr+ +a+a++ dP++l+lde t+ ld +    +++ + ++ k+k  t i+ +h +  v    d + ++  G+iv + + +el+++e
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKtrTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELVEKE 97 
                79*******************************9988888888888866652268999999999975.699999***********99998776 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.2e-13   8.8e-12     124     209 ..       6      91 ..       2     101 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.2e-13
  TIGR03740 124 qfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiiseGklkyekkid 209
                q+s G kqr+ ia a++++P +l+lde t  ld    + ++  +   ++ k  t i+ +h ls v   ad i ++++G++  ++  +
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDnLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQ 91 
                7899*****************************998888877665156678889999*******95.69***********9887655 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   4.5e-13   3.3e-11     150     207 ..       7      65 ..       4      80 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 4.5e-13
  TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike.akargaaligifh 207
                 sGG kqR+ iara+i+d  iL+Lde t++Ld+   ++v   +++ +ka+  + i + h
  MMETSP1174-20130828|582_1   7 LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNlMKAKTRTTIMVAH 65 
                69*******************************99999977665523444445555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.2   6.4e-13   4.6e-11     143     230 ..       6      94 ..       2      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 6.4e-13
  TIGR03411 143 lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevq 230
                +Ls Gqkq++ i+  ++++p++l+lDe ++ + +e ++ +   l +l  ak+r+ ++v h ++ v + a++++v+ +G+++ +G+ +e+ 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmkAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQELV 94 
                79****************************9977666666666666623467899*********987.6789************988765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   4.2e-12     3e-10     141     225 ..       6      93 ..       3     106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4.2e-12
  TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlavarllaqrllvmkqGrvvesGltrvl 225
                ++sGG +qr+ iar+++  p ++++ e t  l s   r++   l +l++    ++i+v+h   + + a+ + v+  Gr+ve+G  + l
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLdEATSALDSESERIVqaALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 93 
                78*******************99999*********99*99878999***999********555568899**************98766 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   6.7e-12   4.8e-10     127     186 ..       6      66 ..       3      78 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 6.7e-12
  TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlarg.Givllathq 186
                qLs Gqk+R+a+ar +++  ++ +LDE t alD e+ ++++++l++ ++    ++++ +h 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKtRTTIMVAHR 66 
                8******************************************999876541455666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.3     8e-12   5.8e-10     141     226 ..       6      91 ..       2      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 8e-12
  TIGR02633 141 dlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdGqhvatkdae 226
                +l +Gq+q + ia+a+ k   +l+lde +++l  +  +i+   + +l kak+ + + ++h+l  v   +d i+v+ dG+ v     +
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQ 91 
                7899****************************8776666666665543889999**********976.8**********98765555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   9.6e-12   6.9e-10     161     217 ..       6      66 ..       2     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 9.6e-12
  TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaW....lekflkeykGtvvavthd 217
                +lsGG+k+r+a++r ++++P +l+lde t  ld+es       l++ +k  + t ++v+h 
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIvqaaLDNLMKAKTRTTIMVAHR 66 
                79*********************************97651111555555566788888885 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   9.7e-10    1060    1162 ..       5     107 ..       1     114 [] 0.81

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.3e-11
  TIGR01257 1060 qdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsi...wdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrk 1162
                  +lsgg ++++++a a++ d  +++lde ts +d  s r +    d l+k +  rt im +h +    +  d ia++ +gr+   gt   l +  g g y  lv +
  MMETSP1174-20130828|582_1    5 IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVqaaLDNLMKAK-TRTTIMVAHRLST-VMNADSIAVVYDGRIVEQGTHQELVEKEG-GNYRRLVNQ 107 
                 579***********************************98722246666655.69999*9999975.5899***************9987777655.555566654 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   3.3e-11   2.4e-09     210     297 ..       7      92 ..       2     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.3e-11
  TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadk 297
                +sGG+++R++ia +++ +++i+++D+at  LDs     +  al +  +    t+++ ++  s  +    d + v+y+G+++ +G+ ++
  MMETSP1174-20130828|582_1   7 LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM--NADSIAVVYDGRIVEQGTHQE 92 
                49*******************************99877778899999999999999999988654..46***************9886 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.2e-10   1.6e-08     584     641 ..       7      68 ..       5      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2.2e-10
  TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEd....klyelakevgitllsvshrks 641
                LsgG+kqRia+AR     P   +LDE+tsA+  + E     +l +l+k +  t + v+hr s
  MMETSP1174-20130828|582_1   7 LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERivqaALDNLMKAKTRTTIMVAHRLS 68 
                9******************************9997751111455667777788888888866 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.5e-09   1.8e-07     469     550 ..       6      87 ..       3      90 .. 0.96

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.5e-09
  TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                +ls Gq++r+a+  a +++  +l+lde ++  d    r+    l   +k + +t ++++h       ad +  + dG++v++
  MMETSP1174-20130828|582_1   6 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQ 87 
                79******************************************999********************************986 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   3.7e-08   2.6e-06     827     901 ..       5      77 ..       1     108 [. 0.74

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 3.7e-08
  TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyii 901
                  LsGG  qr+ +a+ + k     t+ +lDe t  L  +  + +   l++l++ k  t +++ h l  + +aD i 
  MMETSP1174-20130828|582_1   5 IQLSGGQKQRIAIARAVIK---DPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLSTVMNADSIA 77 
                6788888888888887765...578888888888888888777777788776525678888888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.46
# Mc/sec: 327.10
//
Query:       MMETSP1174-20130828|585_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-52  174.5  11.8    9.4e-24   81.9   2.1    3.0  3  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   9.7e-13     4e-09      57      95 ..       3      43 ..       1      44 [. 0.88
   2 !   69.0   0.4   1.9e-23     8e-20     174     276 ..      38     147 ..      38     162 .. 0.93
   3 !   81.9   2.1   2.3e-27   9.4e-24       3      67 ..     182     246 ..     181     248 .] 0.96

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 9.7e-13
  TIGR00116 57 AaeGvvllkvdnd..kavlveinsetDFvAknegfkelank 95
               A+eGvv++++++    +v+vein+etDFvAk  +fkela+ 
  MMETSP1174-20130828|585_1  3 ANEGVVASYIHTGskLGVMVEINCETDFVAKGPKFKELAKA 43
               89****9988765448**********************986 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 1.9e-23
  TIGR00116 174 eelakdlAmHvAAv.kPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkktvkqllke......knakvtefvrfevGeGi 276
                +elak +Am +AA  + +f++ +d+s+e  + ere e + + l gkP++i  k+veGrl k ++   L+eq ++ ++++tv +l+k       +n+++++f rf++Ge  
  MMETSP1174-20130828|585_1  38 KELAKAVAMQIAACpSVEFVRDEDISEEAKQAEREAEMKSEDLAGKPDDIKVKMVEGRLGKIMKTRVLMEQPYIREPSQTVDELVKGyistlgENIQISRFTRFNLGETQ 147
                589*********984679*****************************************************************************************964 PP

  == domain 3    score: 81.9 bits;  conditional E-value: 2.3e-27
  TIGR00116   3 aisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvd 67 
                ++sa++vk LR++tdA+mm Ck+ALve+ngD+e A+++lR kG+a+aakka+r A+eGvv+++++
  MMETSP1174-20130828|585_1 182 KVSAKDVKALRDETDAAMMKCKQALVESNGDMEAAKEWLRSKGLASAAKKAGRAANEGVVASYIH 246
                5899********************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1258.97
//
Query:       MMETSP1174-20130828|586_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|584_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-76  253.2  13.8    9.7e-76  253.0   9.6    1.0  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
     0.0047   14.4  10.4      0.018   12.6   5.8    2.2  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   9.6   4.7e-79   9.7e-76       1     297 [.      59     359 ..      59     361 .] 0.94

  Alignments for each domain:
  == domain 1    score: 253.0 bits;  conditional E-value: 4.7e-79
  TIGR00817   1 lqtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                l++g +f+lwy+ln+++ni+nkk l++ + p+++++++l+ g+ ++++ w+++l k++ + ++ ++ l p ai+h   hv +  sl++ avSfth++ka ep++s++ls++fl++ +p+++ylsLlp+++Gv lasl+elsf++l+f  am+sn++  +r i+sK +l  k    +l   nlya+++il++++l+p++++ve +  +++ +  ais+ + +   + +  +  +++ ly+ vaf  l+ v+p+t++vgN++KRvv+I +S+++f+++++ l + G ++ai+G+ lYs  k+k
  MMETSP1174-20130828|584_1  59 LKVGGYFALWYILNIGYNIYNKKALNIVNLPWTIATLQLFAGIPYVFFLWTTGLRKKPILTTENVQNLAPSAICHLGTHVGAVLSLGAGAVSFTHIVKASEPVVSALLSAVFLKEFLPIPVYLSLLPVIGGVGLASLKELSFSWLAFSTAMLSNVASASRAILSKTVLSGKpmgeNLTAQNLYAVLTILAFVMLLPMSLCVETPMKIKAVVDAAISGGTPMGELAMVSALSGVFYYLYNEVAFLALNAVAPVTHAVGNTIKRVVIILASVIVFRNPMTNLGAAGSAIAIFGTLLYSLAKNK 359
                678899*********************************************************************************************************************************************************************99999*************************9988888677677777665544433333334499*************************************************************99876 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.02        41      82     117 ..     129     164 ..     104     182 .. 0.80
   2 !   12.6   5.8   8.7e-06     0.018     113     222 .]     238     353 ..     179     353 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.02
  TIGR00803  82 nlvvglsavlsallssglagvyfekilkdkdtsfyv 117
                + +  l + ++a+ls+g   v f  i k ++ ++++
  MMETSP1174-20130828|584_1 129 SAICHLGTHVGAVLSLGAGAVSFTHIVKASEPVVSA 164
                667788889999999999999999999999988765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 8.7e-06
  TIGR00803 113 tsfyvrnlqlplfgllvt.fvvlllsdgslisnkgffigytt.avwivvllnvvgglcvglvvkyadnt....tksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                + +y+    l +++ll + ++v+   + +++++  ++ g +  ++ +v +l+ v +++   v ++a n     t  +   ++ ++++l+sv++f+++++ ++a g  +++++tllY
  MMETSP1174-20130828|584_1 238 QNLYAVLTILAFVMLLPMsLCVETPMKIKAVVDAAISGGTPMgELAMVSALSGVFYYLYNEVAFLALNAvapvTHAVGNTIKRVVIILASVIVFRNPMTNLGAAGSAIAIFGTLLY 353
                335555555666666655699999999999999999999887255666677888888889999***999888899999999**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1323.56
//
Query:       MMETSP1174-20130828|589_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|590_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|587_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-33  112.4   5.0    8.3e-33  111.9   3.5    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.8e-21   73.7  10.3    4.7e-12   43.7   0.0    3.0  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.6e-15   53.9   0.0    2.4e-08   31.8   0.1    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    7.5e-13   45.6  21.1    4.9e-08   29.7   0.0    3.1  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.9e-11   41.0   0.0    6.4e-05   20.6   0.0    2.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    6.5e-08   29.6   0.0    0.00012   18.7   0.0    3.8  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
        2.4    4.2   9.3        2.9    3.9   6.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        6.2    2.1  20.5        7.1    1.9  14.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   3.5   1.6e-35   8.3e-33       5     295 ..      18     319 ..      12     325 .. 0.71

  Alignments for each domain:
  == domain 1    score: 111.9 bits;  conditional E-value: 1.6e-35
  TIGR01622   5 rereRsRdssrea.drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyr........drerrsrkrreserererekerrredevrrkrkeredrrerrekeer.lkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivq....aseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                ++++  R+ + ea + d  +d++++++++++ ++e   +   d d  +++++++k          d  ++++k+ ++e++ ++ek+ + e++++  +  ++d   + + +++  + +  ++    + vf+ +l   +++  ++  F+  gkv + + + Dr+S++ +G +++ F   e+  +A++++G  +lg+Pv+v      s+A   +  k  ++ +  +p+  +   L+ Gnl f+i ++ ++  F+  Gei +++   D etG  kG GF +Fsd + + +   k NG  l GR+++  +
  MMETSP1174-20130828|587_1  18 KSKK--RKAEAEAaEADASKDAKKDKKKSKKVKKEVAAEVAPDVDTPKKKKKKEKAAaeaaamdvDTPKKKAKKDKKEKKAKKEKKEEVEEVTEAASASDDDSGGGLKMHKKpQPGDAVDNPTGTLEVFMGNLSFDIDDAGVQAAFESCGKVTNCKWLTDRESGKFRGCGFIAFDSAEAAGKAVGMNGTEVLGRPVKVDfakgKSDAGGGKGGKGGQTRE-MQPKPDGCNTLFAGNLSFDIDDDAVHAFFKDCGEISSIRWLTDRETGDFKGCGFFEFSDPDASLDSAAKKNGESLLGRPVRLDF 319
                2223..3333333366666666666666666555555444344433333333332220011111122233333333333333333335556666666666666666555434466677778888899***********************************************************************8322245565555555444444.55667899************************************************************************9876 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   7.5       6.2   3.2e+03     447     519 ..      33      91 ..       1     127 [. 0.28
   2 !   43.7   0.0   9.1e-15   4.7e-12     287     365 ..     142     220 ..     123     223 .. 0.93
   3 !   31.6   0.0   4.2e-11   2.2e-08     286     367 ..     244     326 .]     229     326 .] 0.91

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 6.2
  TIGR01628 447 aqlaqqrlqaqgrrnlnnr.nrnvlgnm.........nkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqatksn 519
                a + +++ ++++ +++++  + +              +kk+++aa++a+ ++v                     p+k+a+k +
  MMETSP1174-20130828|587_1  33 ASKDAKK-DKKKSKKVKKEvAAE----VapdvdtpkkKKKKEKAAAEAAAMDVDT-------------------PKKKAKKDK 91 
                1111111.000011111111111....1111111111222222222222222222...................222222211 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 9.1e-15
  TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrke 365
                 +++ Nl   +dd+ ++  Fe +G++t +k ++d e++k +g GF++f s+e+A kAv  ++g+ + g+P+ v +A+ k 
  MMETSP1174-20130828|587_1 142 EVFMGNLSFDIDDAGVQAAFESCGKVTNCKWLTDrESGKFRGCGFIAFDSAEAAGKAV-GMNGTEVLGRPVKVDFAKGKS 220
                57888*****************************999********************9.5***************99776 PP

  == domain 3    score: 31.6 bits;  conditional E-value: 4.2e-11
  TIGR01628 286 vNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqR 367
                + l+  Nl   +dd  ++  F+++Gei S + ++d e++  kg GF  fs++++  +   + +g+ l g+P+ + +A  + qR
  MMETSP1174-20130828|587_1 244 NTLFAGNLSFDIDDDAVHAFFKDCGEISSIRWLTDrETGDFKGCGFFEFSDPDASLDSAAKKNGESLLGRPVRLDFATPRAQR 326
                458999*****************************999*************************************99999887 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   4.6e-11   2.4e-08     174     348 ..      42     219 ..      14     222 .. 0.66
   2 !   20.1   0.0   1.6e-07   8.3e-05     271     349 ..     245     324 ..     230     326 .] 0.72

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.6e-11
  TIGR01661 174 snskallsdleavlnaqltr..vprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaa.....sdgagycifvynlspdtdeavlq.lfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                ++sk ++ +++a +++ + +    +    +aa  a+++  + k + ++ d  +  ak+ +++ v + + a +as   + g   gl  +++        +++    +f+ nls d d+a +q  f   G v++ k + d ++ k +G gf++    + a +a+  +nG+++ +r ++v f   k
  MMETSP1174-20130828|587_1  42 KKSKKVKKEVAAEVAPDVDTpkKKKKKEKAAAEAAAMDVDTPKKKAKK-DKKEKKAKKEKKEEVEEVTEAASASDDDSGG---GLKMHKKPQPgdavdNPTGTLEVFMGNLSFDIDDAGVQaAFESCGKVTNCKWLTDRESGKFRGCGFIAFDSAEAAGKAV-GMNGTEVLGRPVKVDFAKGK 219
                555666666666665554330033333345555666666655544443.4444445666666666555444444443333...3333322211233435677789************999736****************************98876666665.89********9999987655 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.6e-07
  TIGR01661 271 cifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnka 349
                 +f  nls d d+ ++  +f + G + s++ + d +t   kG gf   ++ d +  + +  nG +l +r +++ f t +a
  MMETSP1174-20130828|587_1 245 TLFAGNLSFDIDDDAVhAFFKDCGEISSIRWLTDRETGDFKGCGFFEFSDPDASLDSAAKKNGESLLGRPVRLDFATPRA 324
                57777888887665543677788888888888888888888888888888888888888888888888777777776655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2  12.5      0.12        59      30     129 ..      13     112 ..       7     118 .. 0.75
   2 !   15.6   0.0   1.8e-06   0.00095     298     373 ..     142     216 ..     132     223 .. 0.92
   3 !   29.7   0.0   9.5e-11   4.9e-08     292     368 ..     239     315 ..     229     326 .] 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.12
  TIGR01642  30 drsrdRdRdrr.drrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqa 129
                +++++++++r+ + + +  + s+d ++ +++s++ +++    +    d  +++++++++ + e       +++++ kkd+k+++ ++ k+ + e vt+ + 
  MMETSP1174-20130828|587_1  13 EKKEKKSKKRKaEAEAAEADASKDAKKDKKKSKKVKKEVAAEVAPDVDT-PKKKKKKEKAAAEAAAMDVDTPKKKAKKDKKEKKAKKEKKEEVEEVTEAAS 112
                4555555555534666666677777777777777766666666666666.677777788888888999999**************************9875 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.8e-06
  TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                 +++gnL +d++d  v+   es G +   + + d++ G+ +G +F+ ++ +  +  A+ ++nG ++ ++ ++v +A
  MMETSP1174-20130828|587_1 142 EVFMGNLSFDIDDAGVQAAFESCGKVTNCKWLTDRESGKFRGCGFIAFDSAEAAGKAV-GMNGTEVLGRPVKVDFA 216
                58**********************************************9999999997.9*****99999999888 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 9.5e-11
  TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkL 368
                 +d+ + l+ gnL +d++dd v+   ++ G++ +   + d++tG  KG +F+e+ d+  +    a  nG +l ++ +
  MMETSP1174-20130828|587_1 239 KPDGCNTLFAGNLSFDIDDDAVHAFFKDCGEISSIRWLTDRETGDFKGCGFFEFSDPDASLDSAAKKNGESLLGRPV 315
                68999****************************************************98766666677776666555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   6.4e-05     107     185 ..     140     217 ..      82     226 .. 0.75
   2 !   18.8   0.0   4.2e-07   0.00022      93     186 ..     227     322 ..     219     326 .] 0.83

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.2e-07
  TIGR01659 107 gtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar 185
                + ++ +  l  d+ d  + a f + g +  c+ + d  +g   g +f+ f s   + +a+  +ng  v  + +kv +a+
  MMETSP1174-20130828|587_1 140 TLEVFMGNLSFDIDDAGVQAAFESCGKVTNCKWLTDRESGKFRGCGFIAFDSAEAAGKAV-GMNGTEVLGRPVKVDFAK 217
                335566778899999999999999999999999999999999999999999988888888.579999999999999997 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 4.2e-07
  TIGR01659  93 lgsggsdd.ndtrasgtn.livnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarp 186
                +g gg+    +++ +g n l    l  d+ d  ++a+f+  g i + r + d  tg   g +f +f+    s+ +  + ng ++  + +++ +a p
  MMETSP1174-20130828|587_1 227 GGKGGQTReMQPKPDGCNtLFAGNLSFDIDDDAVHAFFKDCGEISSIRWLTDRETGDFKGCGFFEFSDPDASLDSAAKKNGESLLGRPVRLDFATP 322
                344444433677778877366789******************************************999999999999999999988888888888 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -22.3  21.5         8   4.1e+03     400     476 ..       6     100 ..       2     119 .. 0.41
   2 !   18.7   0.0   2.4e-07   0.00012     208     264 ..     148     203 ..     123     216 .. 0.86
   3 !   16.3   0.0   1.3e-06   0.00068     110     179 ..     248     318 ..     242     326 .] 0.91

  Alignments for each domain:
  == domain 1    score: -22.3 bits;  conditional E-value: 8
  TIGR01645 400 psllaspqlkieekieevtlgalddtlalkepske...................aasslalaaaakakeaaaal.llenkkkkkekeeeelqpklve 476
                p +la +++k ++  +  + +   ++ a k+++k+                     +     ++ ka++ aaa+ +  +kkk+ +k+++e + k  +
  MMETSP1174-20130828|587_1   6 PKVLAAKEKKEKKSKKRKAEAEAAEADASKDAKKDkkkskkvkkevaaevapdvD-TPKKKKKKEKAAAEAAAMdVDTPKKKA-KKDKKEKKAKKEK 100
                6666666554444444444444444445555555555555555555555444421.222222222222222333033333333.2322222222222 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.4e-07
  TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnl 264
                +  d+ +  +++ fe+ G++ +ck   +  ++k +G Gf+ f+ +++  +a+ +mn 
  MMETSP1174-20130828|587_1 148 LSFDIDDAGVQAAFESCGKVTNCKWLTDRESGKFRGCGFIAFDSAEAAGKAV-GMNG 203
                566999999***************************************9998.6775 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.3e-06
  TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                 G +sf++ +d +   f+  G i si    d  t+  kg  f e   P+a+l +  + ng  l Gr ++++
  MMETSP1174-20130828|587_1 248 AGNLSFDIDDDAVHAFFKDCGEISSIRWLTDRETGDFKGCGFFEfSDPDASLDSAAKKNGESLLGRPVRLD 318
                6999****************************************999*****99*******9999998876 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.5    0.0057       2.9     199     296 ..      19     120 ..       4     172 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0057
  TIGR00934 199 deqdsvhsdqnsedvksdtsadesisslrfdeskekkk..strvpsekfakrresrdidpedlyrsimmlqe.kheatakirdk...iseanslaaesdeesse 296
                 ++ +++++  + d ++d ++d++ s +++++    +   + ++p +k +k++ + +  + d++ +++++++ k+e +ak+  k   ++e+ ++a+ sd++s+ 
  MMETSP1174-20130828|587_1  19 SKKRKAEAEAAEADASKDAKKDKKKS-KKVKKEVAAEVapDVDTPKKKKKKEKAAAEAAAMDVDTPKKKAKKdKKEKKAKKE-KkeeVEEVTEAASASDDDSGG 120
                22223333333334444444444433.2222222222200222333333333333333444444444443320222222222.234455555555566555544 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  14.2     0.014       7.1     739     853 ..       3     114 ..       1     166 [. 0.70

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.014
  TIGR00927 739 eedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGee 853
                eedp +  ++++ e+k+++++ eaea+ ea++ kd ++++++ ++ ++e  ae   + +++ ++k +++  +e+ a + ++  + ++++ ++e+++++e  ++e e  +e+    
  MMETSP1174-20130828|587_1   3 EEDPKVLAAKEKKEKKSKKRKAEAEAA-EADASKDAKKDKKKSKKVKKEVAAEVAPDVDTPKKKKKKEKAAAEAAAMDVDTPKK-KAKKDKKEKKAKKEK-KEEVEEVTEAASAS 114
                899999999999999999999999998.99999999999999999999999999888888888777777666666655443332.222333333344443.22223223222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       567  (0.138225); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 551.65
//
Query:       MMETSP1174-20130828|588_1  [L=1012]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   12.0  25.0       0.01   11.4  17.4    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.026   10.0  19.8       0.04    9.4  13.7    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4  17.4   4.9e-06      0.01     753     931 ..     142     321 ..     107     345 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.9e-06
  TIGR02168 753 qlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekel.eeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlel 931
                +  k+++el+++ e ++  +++++++l +++eei +l+++  +++e++++ r +l + +++lt++++++++++ +l++ +++ +++  ++ ++ e+++ +le +  ++++++e+++ +    + +l++ +++ +s++++l++++++ +++ +++  l ++ ++l++e+ + +++ +q++ 
  MMETSP1174-20130828|588_1 142 RVLKRVSELQASFEGQSVLRHQSDKRLRQSKEEIFSLKQTNLKATEAAEKARFNLVRSHSALTSTEQKLDDTQATLKKTKRDGHRQILNArRQSEDKLLSLERNNRKANHAVERANYNAVITHVALNKSTQQLNSTQAELKKANKDAQKMIRTVACLGEAESKLDTETAKVQSQEKQIQV 321
                444566666667777777777777777777777777777777777777777777777777777777777766655544444433332222022333333444444444444444444444445555555555555555555555555555555555555555555555555544444442 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  13.7     2e-05      0.04     335     507 ..     143     323 ..     116     344 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2e-05
  TIGR02169 335 lkeeieelereieeekkereklkeelkelkeel.......eelraeleevdkeaaelreelkelkekleklkeelnelkreldrll.eelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                + +++ el+ + e + + r++  ++l+++kee         +  + +e+   +  ++  +l + ++kl++++  l++ kr+ +r + +  ++ e +l  l+ +  +++++++  + ++   + +++k++q+l++++++l+ka+k  +k   +++ l +  s+l  e a+++ q+k+++   
  MMETSP1174-20130828|588_1 143 VLKRVSELQASFEGQSVLRHQSDKRLRQSKEEIfslkqtnLKATEAAEKARFNLVRSHSALTSTEQKLDDTQATLKKTKRDGHRQIlNARRQSEDKLLSLERNNRKANHAVERANYNAVITHVALNKSTQQLNSTQAELKKANKDAQKMIRTVACLGEAESKLDTETAKVQSQEKQIQVLR 323
                4555555555665555555555555555555541000000444444444444444555667778888888888888888877665415555566677788888888888888877777788888999999999999999999988888888888888888888888777777777665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.18s 00:00:00.90 Elapsed: 00:00:00.76
# Mc/sec: 1757.54
//
Query:       MMETSP1174-20130828|595_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|605_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 532.67
//
Query:       MMETSP1174-20130828|606_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 268.10
//
Query:       MMETSP1174-20130828|612_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 188.08
//
Query:       MMETSP1174-20130828|616_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 642.73
//
Query:       MMETSP1174-20130828|610_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1283.59
//
Query:       MMETSP1174-20130828|617_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 162.79
//
Query:       MMETSP1174-20130828|625_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|627_1  [L=1354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.22s 00:00:00.98 Elapsed: 00:00:00.70
# Mc/sec: 2553.05
//
Query:       MMETSP1174-20130828|631_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|633_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 930.36
//
Query:       MMETSP1174-20130828|634_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|635_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.9    4.1   8.3          7    4.0   5.8    1.0  1  TIGR04087 YqxM_for_SipW: YqxM protein


Domain annotation for each model (and alignments):
>> TIGR04087  YqxM_for_SipW: YqxM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   5.8    0.0017         7      33      73 ..       8      53 ..       1      56 [] 0.43

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0017
  TIGR04087 33 sqltsdttasfsdvkkaslsvqagedfqdtddn.....wdgSdLkl 73
               ++ t++t++s  ++ +a+++  ++++ +  +++     +d+S+L+ 
  MMETSP1174-20130828|635_1  8 TTTTTTTSTSTAATISATTTATTATTSSIANNDyhlhdYDQSQLHK 53
               22222222233333333333333333222333356777******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|639_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 275.62
//
Query:       MMETSP1174-20130828|632_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.7   0.0      0.025   11.3   0.0    1.2  1  TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family


Domain annotation for each model (and alignments):
>> TIGR03106  trio_M42_hydro: hydrolase, peptidase M42 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     6e-06     0.025      59     122 ..     130     198 ..     117     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6e-06
  TIGR03106  59 paravvahldtlGamvrelkd.nGrlelvpvGhwsarfaeG....arvtvftdkgefrGtilPlkasGh 122
                 +r v   ++tl  ++  lk+  G+l l p   +s ++a+G    + + v    ++++Gt++Pl asG 
  MMETSP1174-20130828|632_1 130 DNRRVNKSVETLQNNIERLKEyKGKLILFPRQRHSKQLAKGpiadSPADVTGAAQQLQGTVMPLPASGP 198
                578899999***********857*****************94444456788888999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1159.62
//
Query:       MMETSP1174-20130828|642_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 110.59
//
Query:       MMETSP1174-20130828|645_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|646_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|651_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|654_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|653_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 158.39
//
Query:       MMETSP1174-20130828|657_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 255.18
//
Query:       MMETSP1174-20130828|668_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-18   64.3   0.0    2.7e-18   64.2   0.0    1.0  1  TIGR00229 sensory_box: PAS domain S-box protein
     0.0074   14.2   0.0      0.009   13.9   0.0    1.3  1  TIGR02373 photo_yellow: photoactive yellow protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.3e-21   2.7e-18       7     116 ..       2     112 ..       1     113 [] 0.95

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 1.3e-21
  TIGR00229   7 yrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDI 116
                y  ++++++++i+ vd++G ++ +N+a+  ++GY+ e+ +G+n+ + +i+++ r+ v+++++++l g  e+   e+ +++k+G ++ + ++ ++ rd +g+++gvvgi +DI
  MMETSP1174-20130828|668_1   2 YVRLIDTANAPIFGVDKNGLVTVWNKAASIVTGYTVEDTMGHNLVQdFISPDFRSSVQAVLQKALHGS-ETANFEFPLITKKGARVEILLNAASRRDvEGRVVGVVGIGQDI 112
                78899*****************************************9*******************65.7777777778********************************9 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.4e-06     0.009      31      94 ..      15      77 ..       5     103 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.4e-06
  TIGR02373 31 qldesGrilkynkaegelaGrdPekviGknffkevaPctdskefsGrfkegvasGdlnamldyv 94
                +d++G ++ +nka + ++G + e+ +G+n+ ++     d +      ++    G+  a +++ 
  MMETSP1174-20130828|668_1 15 GVDKNGLVTVWNKAASIVTGYTVEDTMGHNLVQDFISP-DFRSSVQAVLQKALHGSETANFEFP 77
               58******************************996432.2333333344444556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 304.38
//
Query:       MMETSP1174-20130828|664_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-16   56.0   0.7    8.7e-16   55.5   0.5    1.2  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.5   2.1e-19   8.7e-16       3      59 ..      45     101 ..      44     109 .. 0.92

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.1e-19
  TIGR02381   3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqgekGa 59 
                +G  kWf+  kGfGfi+++  + D+f h  +i+  G+r+L  G  v ++v q+  G 
  MMETSP1174-20130828|664_1  45 TGSCKWFDVKKGFGFITPDDGSTDVFVHQTNIHAKGFRSLEEGETVAYKVFQDMDGR 101
                6999***********************************************998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 523.96
//
Query:       MMETSP1174-20130828|670_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-29  100.6   0.0    2.1e-29  100.3   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0014   15.6   0.0     0.0088   12.9   0.0    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0071   13.4   0.0       0.16    8.9   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   1.5e-32   2.1e-29       4     159 ..      39     192 ..      37     194 .. 0.95

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 1.5e-32
  TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklf 159
                +k+v++G+ +vGKs+L  ++ +++ + +  +p+++  + t+ +  +  t+k++++DTaGqe+++ + ++y+r +++ + v+di++  ++++ ++  +  e+++  +  +v+i l++nK+Dl++  +++ +++s  a+ n+   +e+sa+  +n+ +lf
  MMETSP1174-20130828|670_1  39 FKLVLLGDTAVGKSCLVVRFVRDE-FFEFQEPTIGAAFLTQTVALEDATIKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNK-DSFNGAK-TWVNELQRRGD-PNVVIALAGNKMDLEHkrKVEFEEASTYAQENGILHMETSAKSATNVKALF 192
                79**********************.555555*******************************************************.9999999.***********.****************999999************************99886 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.4e-06    0.0088     175     339 ..      38     192 ..      19     194 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6.4e-06
  TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidiev..evkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlkiaglileegka.lvivv..NKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgvekll 339
                ++k+ ++G   vGKS Lv +++++e +  ++++ +     +++v  e    k+ + DTAG  r ++++               + a  +++v D+t  ++++   +  ++ ++++g + +vi++  NK+Dl   +k++ e+++   +++++ + +  + +SA++ ++v+ l+
  MMETSP1174-20130828|670_1  38 HFKLVLLGDTAVGKSCLVVRFVRDEFF-EFQEPTIGAAFLTQTValEDATIKFEIWDTAGQERYRSLAPM-----------YYRGASAAIVVYDITnkDSFNGAKTW-VNELQRRGDPnVVIALagNKMDLE--HKRKVEFEEA--STYAQENGILHMETSAKSATNVKALF 192
                589999999999999999999998754.455555555555555400555667889999998887776522...........12233333444444410445444444.455555555514443345899988..4444444443..55666777788888888888888876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00012      0.16     157     222 ..      40     104 ..      29     127 .. 0.75
   2 !    3.4   0.0    0.0055       7.5      73     108 ..     124     160 ..      97     192 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
  TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkk.vittSkfpgTTldlieipldkesvllDtpGiineeqia 222
                + +++G t VGKS l+ + ++ +  + +       f   T+ l +  +  +  + Dt+G  +  ++a
  MMETSP1174-20130828|670_1  40 KLVLLGDTAVGKSCLVVRFVRDEFFEFQePTIGAAFLTQTVALEDATI--KFEIWDTAGQERYRSLA 104
                67899***************9876665523344678888999888888..78899999977666655 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0055
  TIGR03597  73 Difdlegslikelkrfvkenkvl.lvvNKidllpksv 108
                D f+  +++++el+r    n v+ l +NK+dl  k++
  MMETSP1174-20130828|670_1 124 DSFNGAKTWVNELQRRGDPNVVIaLAGNKMDLEHKRK 160
                45777789*******988888764779****955443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 650.05
//
Query:       MMETSP1174-20130828|679_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1174-20130828|671_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-44  147.4   3.3    6.1e-44  147.1   2.3    1.1  1  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   2.3   1.5e-47   6.1e-44       1     127 []      19     210 ..      19     210 .. 0.99

  Alignments for each domain:
  == domain 1    score: 147.1 bits;  conditional E-value: 1.5e-47
  TIGR00307   1 maisr.grskrkatGakrrkarkkrkyelGrepaetkigekrikkvrtrGGnkkvrllrietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig................................................................karvtsrPgqdGvvdgvllee 127
                m+i r   +kr+atG+kr   rkkrk+++Gr  a tkig kr+++vr rGGn k+r++r +t+n+s+ +e  + k r+  vv+n++nnelvr+ +l k+aiv id+                                                                  a+v+srPgq G+vdg+lle+
  MMETSP1174-20130828|671_1  19 MGIARdKEHKRRATGGKRIAIRKKRKFNMGRPAAMTKIGPKRVHNVRCRGGNIKYRAMRLDTGNFSWGSEVHAAKSRVLDVVYNSSNNELVRTKTLVKGAIVLIDANpfktwyqnhygveigkkknakksapaddqeekkksshvlrnlkkrqdtrvlssaiddqmsggrlLACVASRPGQTGRVDGYLLEG 210
                899997789************************************************************************************************************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 570.29
//
Query:       MMETSP1174-20130828|675_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|686_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 326.09
//
Query:       MMETSP1174-20130828|690_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.45
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|699_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.0   0.0     0.0046   13.8   0.0    1.2  1  TIGR02270 TIGR02270: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02270  TIGR02270: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.1e-06    0.0046     146     179 ..      40      73 ..      31     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-06
  TIGR02270 146 hdpGpaleealshedalvlaaalRalgelsrrle 179
                    p+l ++lsh+++ v++ alR++g++  +  
  MMETSP1174-20130828|699_1  40 EHVCPRLVQLLSHASPTVVTPALRTIGNIVSGSD 73 
                5668**********************98766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|704_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|695_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|717_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.7   0.6     0.0018   16.5   0.4    1.1  1  TIGR01841 phasin: phasin family protein


Domain annotation for each model (and alignments):
>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4   4.5e-07    0.0018      22      69 ..       6      51 ..       4      70 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.5e-07
  TIGR01841 22 esveaskrlasagdpqellalqtefakpaaeklleysrelyEiaaktq 69
               e +e++ +l++++d  el a+  ++ ++  ++ll++srel+E+a++ +
  MMETSP1174-20130828|717_1  6 EHAECVEELPETEDEEELRAETERYIEE--QQLLAESRELAELARRCK 51
               889*************************..**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|723_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.29s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 147.52
//
Query:       MMETSP1174-20130828|722_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   10.5   0.0      0.025   10.5   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     6e-06     0.025     125     151 ..      13      39 ..       6      55 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6e-06
  TIGR00870 125 tseftkgitalilAihkqnyeivklLl 151
                  +   g t+l++A++ +n  +v+ L 
  MMETSP1174-20130828|722_1  13 QARTHDGCTPLHIAAQMDNPDVVRYLA 39 
                5667789*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 353.97
//
Query:       MMETSP1174-20130828|724_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 682.57
//
Query:       MMETSP1174-20130828|730_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|734_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.8   1.3      0.018   13.4   0.9    1.4  1  TIGR03894 chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
      0.019   10.5   7.6      0.021   10.3   5.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.031    9.7   3.5      0.034    9.6   2.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.37    9.0   8.9          2    6.7   2.6    2.4  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ


Domain annotation for each model (and alignments):
>> TIGR03894  chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   1.7e-05     0.018      27      84 ..      21      79 ..       6      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-05
  TIGR03894 27 eprlqlvlkalltiGdlsdqleaamvvgviaeqepddeenegee.ketkeesesesees 84
               +++l+  l a+  +G++s+ql  a+ +g   +qe+ + e ++ +   ++e+  +e ++ 
  MMETSP1174-20130828|734_1 21 QTQLDTSLPAVSQLGEVSQQLAGAISIGEQLQQEKAELEANKTAlLAERETAAAELRTA 79
               6778888999*************************999887776444444444444444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.3   2.1e-05     0.021     710     795 ..       4      92 ..       1      94 [. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.1e-05
  TIGR02168 710 eeleeeleklrkeleelerklselkkelerlekeveqleerl...aqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieq 795
                e+++ el+++++++ +l+++l+     +++l + ++ql+  +   +ql++e +ele+++++l +e+e a +el +a+++i++l++++++
  MMETSP1174-20130828|734_1   4 ETAAAELRTAQTTIVDLQTQLDTSLPAVSQLGEVSQQLAGAIsigEQLQQEKAELEANKTALLAERETAAAELRTAQTTIVDLQTQLDT 92 
                45555666677777777777777777777777777776666533357788888888888888888888888888888888888887765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.4   3.3e-05     0.034     383     465 ..       5      90 ..       1      94 [. 0.47

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.3e-05
  TIGR02169 383 elreelkelkekleklkeelnelkreldrlleelkrleeel...aelkaelerieekiaeleeeleelaeeikkaeqkleqlkedl 465
                ++ +el  +++ + +l+ +l+ +    ++l e +++l  ++   ++l++e +++e+++++l +e+e++a+e+++a++ +  l+ +l
  MMETSP1174-20130828|734_1   5 TAAAELRTAQTTIVDLQTQLDTSLPAVSQLGEVSQQLAGAIsigEQLQQEKAELEANKTALLAERETAAAELRTAQTTIVDLQTQL 90 
                34444555555555555555555555555555555554432111455555555555555555555555555555555555544444 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.1    0.0056       5.7      14      47 ..       2      35 ..       1      53 [. 0.74
   2 ?    6.7   2.6    0.0019         2      30      78 ..      45      91 ..      28      94 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0056
  TIGR02473 14 eeeqakselakaqaeferleqqLqqlekereeye 47
               e+e+a+ el +aq ++  l++qL+       ++ 
  MMETSP1174-20130828|734_1  2 ERETAAAELRTAQTTIVDLQTQLDTSLPAVSQLG 35
               6899*******************98665555544 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0019
  TIGR02473 30 erleqqLqqlekereeyeqqanekvqsgtsaaelsnlqrfirqldeaie 78
                 + +qLqq ++e e+  ++++ + + +  aael+  q+ i  l+++++
  MMETSP1174-20130828|734_1 45 ISIGEQLQQEKAELEANKTALLAERETA--AAELRTAQTTIVDLQTQLD 91
               4566788888888888888887777777..9999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|736_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.25s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 260.21
//
Query:       MMETSP1174-20130828|743_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1174-20130828|739_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.51
# Mc/sec: 1594.22
//
Query:       MMETSP1174-20130828|755_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1174-20130828|753_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       360  (0.0877621); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.25s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 311.12
//
Query:       MMETSP1174-20130828|756_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 754.81
//
Query:       MMETSP1174-20130828|758_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|757_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 383.59
//
Query:       MMETSP1174-20130828|761_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|764_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1174-20130828|765_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|769_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-24   81.8   6.4    5.5e-24   81.8   4.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    1.2e-20   71.7   3.3    1.4e-20   71.5   2.3    1.2  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
      2e-05   20.4   3.6    2.2e-05   20.3   2.5    1.0  1  TIGR00845 caca: sodium/calcium exchanger 1


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   4.5     4e-27   5.5e-24    1023    1139 ..       2     119 ..       1     159 [. 0.86

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 4e-27
  TIGR00927 1023 fllpivfplwltvpdvrr.learkffvitflGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslin 1139
                  l+pi   + +t+pdvr   +    +  +  G  +w+ ++sy+m      +Ge + i+  ++G+ti aaGts p++  s++var+GlG+mavs + G n+f+i +Gl lp+l + ++ 
  MMETSP1174-20130828|769_1    2 ILFPIKVGFHFTIPDVRMgVDGSNKYPGAIAGCFVWLIILSYVMTLCLEYLGELLHITPIVVGMTISAAGTSFPNVFGSMVVARQGLGNMAVSNAFGGNVFNILMGLGLPFLCYCFLG 119 
                 68899999*********74466666778899*********************************************************************************999874 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   2.3     1e-23   1.4e-20     182     277 ..      34     128 ..       2     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 1e-23
  TIGR00367 182 gltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallatirvkpvavsldal 277
                 +++l++ s+++     +++e l i   ++G+ti AaGTS p+   s+++ar+glg++av++  G N+f+Il+glglp l +   + + +v  d  
  MMETSP1174-20130828|769_1  34 CFVWLIILSYVMTLCLEYLGELLHITPIVVGMTISAAGTSFPNVFGSMVVARQGLGNMAVSNAFGGNVFNILMGLGLPFLCYC-FLGQESVDYDLH 128
                499*****************************************************************************998.444555544444 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.5   1.6e-08   2.2e-05     751     872 ..      34     155 ..      21     160 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.6e-08
  TIGR00845 751 cfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiyhaaq.....GekfkvepGtlafsvtlftvfaliaivv 872
                cfv  i+l  ++t        ++G  + +   v  ++  a Gts P+ f s+v a q    + ++ n  G n  n+++G+G+ +       +        + + +e+G + f v+++    ++ ++ 
  MMETSP1174-20130828|769_1  34 CFVWLIILSYVMTLC----LEYLGELLHITPIVVGMTISAAGTSFPNVFGSMVVARQG-LGNMAVSNAFGGNVFNILMGLGLPFLCYCFLGQESvdydlHMYYGMEAGGVIFPVIVLIGLVVLHLIR 155
                555555555555544....468899999999999*********************986.56899*****************9875543322211111112344556666666666665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.25s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|777_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 212.33
//
Query:       MMETSP1174-20130828|776_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|775_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.7   0.0     0.0082   13.5   0.0    1.1  1  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     2e-06    0.0082      16      36 ..      48      68 ..      40      69 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-06
  TIGR00633 16 kklflellkeekpDvlclQEt 36
               ++ + e+l+++++Dv+clQEt
  MMETSP1174-20130828|775_1 48 EQGAKEILTQNNFDVICLQET 68
               566789**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1174-20130828|781_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 368.18
//
Query:       MMETSP1174-20130828|782_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|786_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1174-20130828|788_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-37  124.7   0.0    7.2e-37  124.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   1.8e-40   7.2e-37       1     160 [.       1     153 [.       1     157 [. 0.90

  Alignments for each domain:
  == domain 1    score: 124.5 bits;  conditional E-value: 1.8e-40
  TIGR00231   1 tkeikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfk 160
                ++ ik+v+ G+++vGK++Ll+s++ n  ++ e+ p+v+++y ++ +++dG ++ + l+DTaGqed+d++r+l+++++++++ +++ v++  +++++ +k+++ei h+a+  +vp+ilv++K Dl+d  +      +++ +++p+++ + e++   ++++k
  MMETSP1174-20130828|788_1   1 MENIKCVVAGDGSVGKTCLLISYTANA-FPGEYIPTVFDNYSAN-VMVDGGPVNLGLWDTAGQEDYDRLRPLSYPQTDVFILCYSTVNP-TSFDNITKKWYPEISHHAE--NVPFILVGTKTDLRD--DAGNVAHLKARQQQPVSRNDGEELGISLGAYK 153
                6789***********************.***************8.99***9**************************************.*******************..***************..66666666666666777777666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1174-20130828|785_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.71
# Mc/sec: 1199.06
//
Query:       MMETSP1174-20130828|790_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1014.06
//
Query:       MMETSP1174-20130828|801_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-06   23.7   0.0    3.3e-06   23.4   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B
    4.4e-06   23.2   0.0    5.9e-06   22.8   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.8e-06   23.7   0.0    6.3e-06   23.4   0.0    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    4.8e-06   23.4   0.0    6.3e-06   23.0   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.8e-05   20.5   0.0    2.8e-05   19.9   0.0    1.3  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    0.00017   17.8   0.2      0.082    8.9   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase


Domain annotation for each model (and alignments):
>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.9e-09   3.3e-06     429     520 ..     138     239 ..     130     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.9e-09
  TIGR00631 429 vddlleeirervaknervlvttltkkmaedltdylkelgik.vkylhseidtlerveiirdL.......r..kgefdvlvGinLLreGlDlPevslvailDa 520
                ++ ll+e +++ + n+r++v + t ++a+dlt+ + + g+  v+  h+++ + +r+e +r++       +  ++++  lv  +L   GlDlP+v  v   D 
  MMETSP1174-20130828|801_1 138 LERLLKESQQTGEPNQRTMVFVNTARVAQDLTEKMVDEGMAgVRAYHKNVPADDRAEALRSFsgpistaQegQSTCRTLVCTDLAARGLDLPDVDHVIQYDF 239
                67899****************************999988754999*************99873333322322456788****************99877664 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.6e-09   5.9e-06     224     325 ..     152     263 ..     131     285 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 8.6e-09
  TIGR01389 224 eksGiiYassRkkveelaeaLeskgieal.aYhaGlskkvRaeaqekFl.........eddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeai 325
                ++  +++ ++ +  ++l+e++  +g++ + aYh  +  + Raea+++F          +   + +v t     G+d +dv +vi +d   n+ ++    GR GR G+   a 
  MMETSP1174-20130828|801_1 152 NQRTMVFVNTARVAQDLTEKMVDEGMAGVrAYHKNVPADDRAEALRSFSgpistaqegQSTCRTLVCTDLAARGLDLPDVDHVIQYDFATNVVQHVHRLGRTGRAGKLGRAS 263
                46779999*****************986538*****************633333222223456789999999********************************99876554 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   9.3e-09   6.3e-06     112     321 ..      25     258 ..      12     278 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 9.3e-09
  TIGR01587 112 evgeaeitlasianSvliiDEvhayee..ytkal..llallevlkdvd...vkillmsAtlp........kllkeylekielveenealdlke.........ekrfenqrisliekdkleeisslerllealkke....kkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkk.........nekfvivaTQviEvslDi.svdvlit.elap.idsLiQRlGRlaRygr 321
                ++  ++  l+     +l++DE++++ +  + ++   +l++ +++ + +   ++++l  At+p          l + +++                       +++ +++ + + e+d + ++  lerll+++++     ++ +++vNt ++Aq l +k+ +++ +  +  +H      dr++     l++++          +  + +v T ++  +lD+ +vd +i  + a+ + + + RlGR  R g+
  MMETSP1174-20130828|801_1  25 TFAARYAELLLADLEILVLDEADMLLDgsFLNQVdqILVARKRVFRTGgkpAQVVLAAATVPnyglksveLELSKRFPDLI-----------RvetgllhhtQPQLDQDWLYVDESDPDAQFACLERLLKESQQTgepnQRTMVFVNTARVAQDLTEKMVDEGMA-GVRAYHKNVPADDRAEA----LRSFSGpistaqegqSTCRTLVCTDLAARGLDLpDVDHVIQyDFATnVVQHVHRLGRTGRAGK 258
                46666666666667799******98753233333346666555544431115689999****6555444323344444444...........3333444444568889999999999999999*****999887522226799*****************99996.89************998....55555555567678788899************9899999862444313344668888777665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.3e-09   6.3e-06     225     329 ..     151     265 ..     121     297 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.3e-09
  TIGR00614 225 kgksGiiYClsrkkveqvaaeLqkkgla.aaaYhagleesarkevqkkf.......l..rdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlf 329
                + +  +++ ++ + ++++++++  +g+a  +aYh ++  ++r+e  + f       +  +  ++ +v t     G++ pdv +vi y+ + ++ ++    GR GR g   ++  +
  MMETSP1174-20130828|801_1 151 PNQRTMVFVNTARVAQDLTEKMVDEGMAgVRAYHKNVPADDRAEALRSFsgpistaQegQSTCRTLVCTDLAARGLDLPDVDHVIQYDFATNVVQHVHRLGRTGRAGKLGRASHL 265
                3445599********************9458**************99994444322122345777777777789*******************************9987766433 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.1e-08   2.8e-05     111     346 ..      13     256 ..       9     286 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.1e-08
  TIGR04121 111 rkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdll.eLaLarLrrla...pelrvvglsATvgnleeaaevllgeek.....eekaklvkakekkalevesllpeeeeklPwaGhlglk.aleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalk.........agklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                 +  p++L+ Tp      ++ + ae l++dl+++v+DE   Ll     +++ ++ +ar r ++   +  +vv  +ATv n       l  +++     + ++ l++  ++ +l+ + l  +  e+ P a + +l+ +l+e  ++ + ++ t+vF+Nt   a  l +++++   e  + +  +H  + ++ R +  + ++         + + r++vcT     G+D  dvd viq   + +v   + R+GR++ +
  MMETSP1174-20130828|801_1  13 GQIAPEVLVCTPT-----FAARYAELLLADLEILVLDEADMLLDGSFLNQVdQILVARKRVFRtggKPAQVVLAAATVPNYGLKSVELELSKRfpdliRVETGLLHH-TQPQLDQDWLYVD--ESDPDAQFACLErLLKESQQTGEPNQRTMVFVNTARVAQDLTEKMVD---EGMAGVRAYHKNVPADDRAEALRSFSgpistaqegQSTCRTLVCTDLAARGLDLPDVDHVIQYDFATNVVQHVHRLGRTGRA 256
                5667888888884.....78888899999999999999999987766666524555665444411144667777788888654433333333322332223333333.2333333333333..56676766666515666777778899********8877666555544...444567789999999999887554422222222124468***************************************9853 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00012     0.082     149     210 ..      28      91 ..      19     100 .. 0.85
   2 !    7.1   0.1   0.00044       0.3     272     376 ..     153     259 ..     139     272 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00012
  TIGR03817 149 arWakf.lralryvvvdechs.yrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaa 210
                ar+a++ l +l+ +v+de+     G f  +v ++l   +r+ ++ G+   ++la+at+ + + +
  MMETSP1174-20130828|801_1  28 ARYAELlLADLEILVLDEADMlLDGSFLNQVDQILVARKRVFRTGGKPAQVVLAAATVPNYGLK 91 
                5777752689*********97358*****************999999999*******9887665 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00044
  TIGR03817 272 vrtltfvrsrrgaevvaleaker.laevdaelaervaayraGylaedrreleralk.dGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqd 376
                 rt++fv++ r a+ ++ +  ++ +a v a   +  a  ra  l+     + +a + + + +++++t+    G+d+  +d v+   f   v     + Gr+Gr+g+ 
  MMETSP1174-20130828|801_1 153 QRTMVFVNTARVAQDLTEKMVDEgMAGVRAYHKNVPADDRAEALRSFSGPISTAQEgQSTCRTLVCTDLAARGLDLPDVDHVIQYDFATNVVQHVHRLGRTGRAGKL 259
                6888888888877666555444404444444444445568877877777777665424578999***************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.60
# Mc/sec: 732.54
//
Query:       MMETSP1174-20130828|808_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|811_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.5   0.0      0.022   11.3   0.0    1.0  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ


Domain annotation for each model (and alignments):
>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.4e-06     0.022     128     186 ..       4      64 ..       3      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.4e-06
  TIGR02485 128 kalvnalyasaerlGveiryeaeveriereedgratiaarl..aaaderiatkavvlaaGG 186
                ka+v    +sae l v   ye+ v+ ++ ++d+++ i + +  a+ad r ++  vv   GG
  MMETSP1174-20130828|811_1   4 KAIVYRSSSSAEDLNVPKVYESGVHPLDVNKDNPTKIFVDSdfAGADRRTTAGHVVFLNGG 64 
                788888899*********************9999998888776888999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|807_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 636.38
//
Query:       MMETSP1174-20130828|814_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1174-20130828|815_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 203.06
//
Query:       MMETSP1174-20130828|820_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 315.31
//
Query:       MMETSP1174-20130828|824_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 312.37
//
Query:       MMETSP1174-20130828|828_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|805_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-221  732.2   1.6   3.2e-221  732.0   1.1    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.7e-71  239.3   0.0    1.9e-71  239.1   0.0    1.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    6.3e-55  184.3   0.7    1.4e-54  183.1   0.5    1.5  1  TIGR00485 EF-Tu: translation elongation factor Tu
      1e-38  131.3   0.1    4.4e-38  129.2   0.1    1.8  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    7.5e-20   69.3   0.5    1.7e-18   64.8   0.4    2.5  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    4.2e-18   62.7   0.0    6.9e-18   62.0   0.0    1.3  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    9.4e-18   61.7   0.0    7.8e-17   58.7   0.0    2.2  1  TIGR01393 lepA: GTP-binding protein LepA
    2.1e-13   47.1   0.0    3.6e-13   46.3   0.0    1.3  1  TIGR00484 EF-G: translation elongation factor G
    2.6e-11   40.5   0.0      4e-11   39.8   0.0    1.2  1  TIGR00503 prfC: peptide chain release factor 3
    3.5e-10   37.7   0.4    1.7e-09   35.5   0.3    2.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
      6e-08   29.0   0.5    6.4e-07   25.7   0.1    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    5.5e-07   26.5   1.0    1.9e-05   21.5   0.0    2.7  3  TIGR00487 IF-2: translation initiation factor IF-2
    4.4e-05   19.9   1.8    0.00021   17.7   0.6    2.4  2  TIGR00491 aIF-2: translation initiation factor aIF-2
     0.0045   13.9   0.1       0.38    7.5   0.0    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  732.0   1.1  1.1e-223  3.2e-221       1     426 [.      19     451 ..      19     452 .. 0.99

  Alignments for each domain:
  == domain 1    score: 732.0 bits;  conditional E-value: 1.1e-223
  TIGR00483   1 makekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele....vqpqtrehvllartlgikqlivainkmd..svnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadn.ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidvkkkk 426
                m+kek h+n+++ighvd+gkst++g+l+y++g+id+r++ek++kea+e gk+sf++a+vld+lk+ererg+tid+a++kfe++ky++t++dapghrdfiknmitg+sqadaa+lv+++++g +e    +++qtreh+lla+tlg+kqliva nkmd  +v+y + +f+e+++ev  +lkkvgykp +++f+p+s++ gdn++++s+n+ wykg+ lleald+l +p++p dkplr+p+qdvy+i+g+gtvpvgrvetgv+k+g++v+f+p+gv +evks+emhhe + +a+pgdn+gfnv+++s+kdi+rg vagd++  ppk+a++f aq+++++hpg+i+ gy+pvld+hta+vac+f e+ +k+d+r+gkv+e +pkf+k gda +v l+ptkp+++e+++e+p+lgrfa+rdm+qtva+gv++ v+k++
  MMETSP1174-20130828|805_1  19 MGKEKVHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGGFEagisKDGQTREHALLAYTLGVKQLIVACNKMDdtTVKYAKGRFDEIVNEVKGYLKKVGYKPMKIPFVPISGWAGDNMIERSTNMAWYKGPYLLEALDNLIPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGVQTEVKSVEMHHESLAEAMPGDNVGFNVKNLSVKDIKRGFVAGDSKRdPPKAAANFDAQVIIMNHPGQISKGYSPVLDCHTAHVACKFAEIKQKMDRRSGKVLEAEPKFVKNGDACMVTLEPTKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKAVDKTE 451
                99**********************************************************************************************************************999989989**************************96669************************************************************************************************************************************************************9988*************************************************************************************************************9986 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.1   0.0   6.6e-74   1.9e-71       3     406 .]      28     444 ..      26     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.1 bits;  conditional E-value: 6.6e-74
  TIGR02034   3 fltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvle.......qtrrhsiiasllGikhvvlavnkid..lvdydeevfeeikkdylalaekl..gvsdvtviPlsalkGdnvveksesmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvled..eidisrGdllaaad.eapevadqfaaelvwlade.allpGksyklklgtkkvrasvaeikhkvdvntlekeaakele..lneiglvklsldeeialdayeenrttGafilidrlsnatvgaGli 406
                ++  G vd Gkst  G l++    i +  +++ e+++++ g+   +  +a ++d l+aere+gitid+a   f+  k  f v d+PGh  + +nm+tg+s ad a+l++d+ +G  e       qtr h+++a  lG+k++++a nk+d   v+y +  f+ei ++ + + +k+  +  ++ ++P+s+ +Gdn++e+s++m Wy+Gp lle l+++   ++ ++++lrlp+q v +         G + +G +k+G  v+ +p g++++v+++   +++l++a+ G+ v + +++    di+rG +  +   + p++a +f+a+++ +++  +++ G s  l   t +v ++ aeik+k+d  + +  +a+       +  +v+l+ ++++ ++a++e   +G f + d    +tv+ G+i
  MMETSP1174-20130828|805_1  28 LVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKG--SFKYAWVLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGGFEagiskdgQTREHALLAYTLGVKQLIVACNKMDdtTVKYAKGRFDEIVNEVKGYLKKVgyKPMKIPFVPISGWAGDNMIERSTNMAWYKGPYLLEALDNLIPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGVQTEVKSVEMHHESLAEAMPGDNVGFNVKNlsVKDIKRGFVAGDSKrDPPKAAANFDAQVIIMNHPgQISKGYSPVLDCHTAHVACKFAEIKQKMDRRSGKVLEAEPKFvkNGDACMVTLEPTKPMCVEAFSEYPPLGRFAVRDMR--QTVAVGVI 444
                7889********************************9999875..599**************************************************************998744333333669***********************955689********************444568899*****************************************************999888889*********************************************9998732359****887665415678999*********9852799****************************9999888765411446778888889*****************998765..67777765 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.5   4.9e-57   1.4e-54       7     392 ..      20     447 ..      14     449 .. 0.77

  Alignments for each domain:
  == domain 1    score: 183.1 bits;  conditional E-value: 4.9e-57
  TIGR00485   7 erskphvnvgtighvdhgkttltaait........tvl.......akegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpm.......pqtrehillarqvgvpklvvflnkvdlvdde...ellelvelevrellseydfpgddvpiv..rgsalkale...gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvl..akpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpeg.............vemvlpgdnvkltvelispvaleegl......rfaireggrtvgagvvski 392
                 ++k hvn+  ighvd gk+t t  +         +++       a+ gk+++k    +d+   e++rgiti+ a  ++e+ k +++ +d pgh d++knmitg++q d ailv+ +++g +        qtreh lla  +gv +l+v  nk+d  + +      + +  ev+  l++ +++  ++p v  +g a   +    ++ +w  k   l+ea+d+ ip p+r  dkp+ l+++dv+ i g gtv  grve g++k g  v      +  +t v  vem +  l ea+ gdnvg  ++ ++ ++i+rg v   +k +  k+  +f+a+v ++++   g    + +gy p +   t+ v+ k +++++              ++v  gd   +t+e  +p+++e  +      rfa+r+  +tv  gv++ +
  MMETSP1174-20130828|805_1  20 GKEKVHVNLVVIGHVDAGKSTTTGHLIykcggidkRTIekfekeaAELGKGSFKYAWVLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGGFeagiskdGQTREHALLAYTLGVKQLIVACNKMDDTTVKyakGRFDEIVNEVKGYLKKVGYKPMKIPFVpiSGWAGDNMIersTNMAW-YKGPYLLEALDNLIP-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAP--TGVQTEVKSVEMHHESLAEAMPGDNVGFNVKNLSVKDIKRGFVAgdSKRDPPKAAANFDAQVIIMNHP--G---QISKGYSPVLDCHTAHVACKFAEIKQkmdrrsgkvleaePKFVKNGDACMVTLEPTKPMCVEAFSeypplgRFAVRDMRQTVAVGVIKAV 447
                5789****************999876411111111122111111022223333333358********************************************************998875422223336************************976654223445666679****************972245454443224233333.456679********9.9*************************************8777653..45678899***********************************83346677888899****9998754..2...244566666666666666655554444456666888877899*******************98643444459**************9876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.1   1.5e-40   4.4e-38      25     278 ..      78     353 ..      26     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 1.5e-40
  TIGR00475  25 adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeG.....v..kaqtkEHLavlkllgikelivvltKaDrvd....eeevkevEeelkeileeeeflknaki..vkvsAktGqGieeLkkelk.....nLlesldak.....dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvvvklkaevklk 278
                 d+l  E+ RG+tiD+    ++ +++  ++iD+PGH  f+kn+++g + +daa+Lv+d+ +G     +    qt+EH +++  lg+k+liv+ +K+D +     + + +e+ +e+k  l++ ++   +ki  v +s   G  + e   +++      Lle ld++       +kplrl++  ++k+ G+Gtv  G +  G +k g  +   p++++  vk+++ ++ s  +a+ G+ +++n++++  +++kRG+++  ++    +   ++ a+v + 
  MMETSP1174-20130828|805_1  78 LDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgfeagIskDGQTREHALLAYTLGVKQLIVACNKMDDTTvkyaKGRFDEIVNEVKGYLKKVGYK-PMKIpfVPISGWAGDNMIERSTNMAwykgpYLLEALDNLippkrPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGVQTEVKSVEMHHESLAEAMPGDNVGFNVKNLSVKDIKRGFVAGDSKRDPPKAAANFDAQVIIM 353
                578889***********99999999*********************************98863333332236*************************8762121456788899999999999887.777644789*******99988888644344588888886432234689**********************************************************************************999999889999998888765 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.4   5.9e-21   1.7e-18       3     285 ..      23     310 ..      21     354 .. 0.67

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 5.9e-21
  TIGR03680   3 qpevniglvGhvDhGkttlvkal...tGvwtdthseel.krgisiklG.yadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaanee......vPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtv......aenapiiPvsalkkvni.......d.....vllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakP 285
                + +vn+ ++GhvD Gk+t++  l    G   ++  e   k +  +  G +  a + +  ++e+++ +t +    + +   + +   +++DaPGh  ++  m++G++  d+a+Lvi++++           qt+eh      +g+k+++++ nk+d  + + a  +++ei + vkg++      + + p +P+s     n+              lleal++ ip p+r  dk+ +l +   + +   G             ++  G++++g    i+PG+ v+       + ++tev s+e+ ++++ ea P
  MMETSP1174-20130828|805_1  23 KVHVNLVVIGHVDAGKSTTTGHLiykCGGIDKRTIEKFeKEAAELGKGsFKYAWVLDNLKAERERGITIDIALWKFE---SPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgfeagiSKDGQTREHALLAYTLGVKQLIVACNKMDDTTVKYAKGRFDEIVNEVKGYLkkvgykPMKIPFVPISGWAGDNMierstnmAwykgpYLLEALDNLIP-PKRPSDKPLRLPLQDVYKIGGIG-------------TVPVGRVETG---VIKPGMVVTF----APTGVQTEVKSVEMHHESLAEAMP 310
                5689*************999877333233344444444144444444435555667777888888888888766655...45667889****************************99863222223457*******************************************9988555555678999****8766555111111132223346777777665.66677777777666555554444.............4444444444...2455554444....233455555555555555555555 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.4e-20   6.9e-18       3     243 ..      27     293 ..      25     317 .. 0.74

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 2.4e-20
  TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlrek.....e.eveer.........vmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplp.......qtrfvlkkalelglk.pivvinkiDrp.....darpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkie 243
                n+ +i hvD Gk t   +l+ ++g ++++     e e +e          v+D    ererGiti       +  ++   ++D+PGh Df  ++    s  d+++l++D+s+G +        qtr     a  lg k  iv  nk+D +     + r +e+v+ev   + ++g +  ++ f  + + a + + + +++    +  p +   l+++ +Pk  +d+pl+l  + + +   +G + +grve+G++k g+ v+++ +    +
  MMETSP1174-20130828|805_1  27 NLVVIGHVDAGKSTTTGHLIYKCGGIDKRtiekfEkEAAELgkgsfkyawVLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGGFEagiskdgQTREHALLAYTLGVKqLIVACNKMDDTtvkyaKGRFDEIVNEVKGYLKKVGYKPMKIPFVPISGWAGDNMIERSTNMAWYK-GPYLLEALDNLIPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTG-VQT 293
                899****************999985544311111101111122233333389*************99999999999***********************************998733333444999888888888876257779***97612212568899*************998887776664444444443333333333.4666666788888***************************************99876544.333 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.7e-19   7.8e-17       5     270 ..      27     329 ..      23     350 .. 0.74

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.7e-19
  TIGR01393   5 nfsiiahidhGkstladrllektkavserelke....q............lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqG.vea......qtlanvylalekdle.iiPvinkidlPsad.....vervkkeie...eviGldaeea..ilvsaktGigiee............lleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvG 270
                n+ +i h+d Gkst +  l+ k++ +++r +++                 +ld+l  ererGiti        +k  ++ +y + +id+PGh df  ++    + ++ a+l++d++qG  ea      qt  ++ la    ++ +i   nk+d  + +      +++ +e++   + +G++ +++  + +s+ +G ++ e            llea+ +++ +Pk  +++pl+  + d +     G v   rv  G ik+g+ +++  tg + ev+ v + + +l++   +   +vG+ + ++ +vkd+k G
  MMETSP1174-20130828|805_1  27 NLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKfekeAaelgkgsfkyawVLDNLKAERERGITIDIAL----WK-FESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgFEAgiskdgQTREHALLAYTLGVKqLIVACNKMDDTTVKyakgrFDEIVNEVKgylKKVGYKPMKIpfVPISGWAGDNMIErstnmawykgpyLLEAL-DNLIPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGVQTEVKSVEMHHESLAEA--MPGDNVGFNVKNL-SVKDIKRG 329
                999************************9976431112122223333333389*************8653....33.35689************************************74343333333888888888887764267789***97765411122577777877333457999888644778999999874433344444444366665.55556899999****999999988999*********************************9998887665..7888999988765.35555544 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.2e-15   3.6e-13      11     146 ..      26     182 ..      18     213 .. 0.72

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.2e-15
  TIGR00484  11 rniGisahidaGktttterilfytgkihk..igevh.......dGa....atmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaG.....vepqsetvwrqakky..evPr.ivfvnkmdkiGanflk 146
                 n+ +  h+daGk+ttt  +++ +g i k  i++ +        G+     ++d ++ e+erGiti  a  + e  ++   +id+PGh df  ++       d a++v+d+ +G     +    +t    +  y  +v + iv  nkmd +  ++ k
  MMETSP1174-20130828|805_1  26 VNLVVIGHVDAGKSTTTGHLIYKCGGIDKrtIEKFEkeaaelgKGSfkyaWVLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgfeagISKDGQTREHALLAYtlGVKQlIVACNKMDDTTVKYAK 182
                488999*******************887633433222222333443222247899******************************************************9864311111555566666665556225665256789**998876543 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.4e-13     4e-11      13     117 ..      27     140 ..      19     203 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.4e-13
  TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavk........argsqrsak.sdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGv 117
                ++ +i h daGk+t t +++   + i++    k        ++gs + a   d ++ e++rGi+i  ++ +f+       ++d+pGh+df ++     + +d+a++vid+++G 
  MMETSP1174-20130828|805_1  27 NLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKfekeaaelGKGSFKYAWvLDNLKAERERGITIDIALWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGG 140
                7889*************99988887765443332222222278888887525999*******************************************************9873 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.3   5.9e-12   1.7e-09       4     133 ..      26     183 ..      23     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 5.9e-12
  TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkk..gvp.iilvvnKiDlkddlktkvk 133
                +++v++Ghvd+GKst++  l+++ + i+++   + +++++e   e Gk                                 y ++++D +G+ df +     + ++++ + v+d +     +e g  k+ ++ +h++ ++  gv+ +i++ nK+D  + +k+  +
  MMETSP1174-20130828|805_1  26 VNLVVIGHVDAGKSTTTGHLIYKCGGIDKR---TIEKFEKE-AAELGKGsfkyawvldnlkaerergitidialwkfespkYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQG--GFEAGISKDGQTREHALLAYtlGVKqLIVACNKMDDTT-VKYAKG 183
                799********************9999888...66666666.555554467788888888888888888**************************55555669999999999999998..7777776666666666655511444368999****998.444433 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.2e-09   6.4e-07      13     122 ..      19     139 ..      12     200 .. 0.80
   2 ?    1.5   0.0     0.045        13     302     340 ..     264     302 ..     246     353 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.2e-09
  TIGR00490  13 mekpefirnigivahidhgkttlsdnllagagmise........ela....geqlf...ldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcaveg 122
                m k +   n+ ++ h+d gk+t +  l+   g i +        e a    g  ++   ld  + e+ergitid a    + ++e  +y   +id+pgh df  ++       d ai+v+++ +g
  MMETSP1174-20130828|805_1  19 MGKEKVHVNLVVIGHVDAGKSTTTGHLIYKCGGIDKrtiekfekEAAelgkGSFKYawvLDNLKAERERGITIDIA----LWKFESPKYYFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQG 139
                66778888999****************99999886422222222222221233332333888999*********98....689**********************99999999*******99877 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.045
  TIGR00490 302 hagevavgrlysgaikkgsevylvdskakariqqvgvym 340
                  g v vgr+ +g ik+g+ v +  +  ++ ++ v ++ 
  MMETSP1174-20130828|805_1 264 GIGTVPVGRVETGVIKPGMVVTFAPTGVQTEVKSVEMHH 302
                5799*****************999998888888887764 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.63   1.9e+02      91     102 ..      29      40 ..      14      46 .. 0.79
   2 !   21.5   0.0   6.3e-08   1.9e-05     116     236 ..      85     217 ..      69     226 .. 0.70
   3 ?    2.5   0.0     0.034        10     497     571 ..     256     329 ..     236     334 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.63
  TIGR00487  91 timGhvDhGkts 102
                 ++GhvD Gk +
  MMETSP1174-20130828|805_1  29 VVIGHVDAGKST 40 
                578*******76 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 6.3e-08
  TIGR00487 116 eaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDG.....vkp..qtieaiehakaanv.PiivainkiDkpeanp.....DrvkqelseyglvpeewGGetifvpvsalkgk 236
                   Git  i  ++ e  +    t +D+PGh  f +    G   +D ++lv+ +  G     + +  qt e    a + +v  +iva nk+D  +++      D + +e++ y         +  fvp+s  +g+
  MMETSP1174-20130828|805_1  85 RERGITIDIALWKFESPKY-YFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgfeagISKdgQTREHALLAYTLGVkQLIVACNKMDDTTVKYakgrfDEIVNEVKGYLKKVGYKPMKIPFVPISGWAGD 217
                4569**********97766.8**************99**************88654222225544478876666766666469********9887531212255666655543222222234456666666665 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.034
  TIGR00487 497 vrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkddvkeveegyeCGivikny..ndikvG 571
                 ++v+k++ iG++  + v+ Gvik +  +     gv+    e++s+    +   e   g + G  +kn    dik G
  MMETSP1174-20130828|805_1 256 LQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGVQ---TEVKSVEMHHESLAEAMPGDNVGFNVKNLsvKDIKRG 329
                5799**********************99999998875...699999999***************9999622688877 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   7.2e-07   0.00021       8     133 ..      29     175 ..      25     188 .. 0.57
   2 ?   -0.9   0.0       0.3        87     487     537 ..     273     323 ..     267     388 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.2e-07
  TIGR00491   8 avlGhvdhGkttlldk.i......rktrv..akreaGgitqhiGaseiPidvikrlcgdllkklkidlki.....PG..llvidtPGheaftslrkrGGaladiailvvdineG.fkp......qtveavnilrql.ktPfvvaankidr 133
                +v+Ghvd Gk+t   + i       k  +   ++ea ++ +    s+    v+++l  +  + + id+ +     P   + vid+PGh+ f +    G + ad ailv+d  +G f+       qt e   +  +l    ++va nk+d 
  MMETSP1174-20130828|805_1  29 VVIGHVDAGKSTTTGHlIykcggiDKRTIekFEKEAAELGK---GSFKYAWVLDNLKAERERGITIDIALwkfesPKyyFTVIDAPGHRDFIKNMITGTSQADAAILVIDSSQGgFEAgiskdgQTREHALLAYTLgVKQLIVACNKMDD 175
                57777777777655442211111112222002233333332...23333445555555555555555443222224411468****************************8764343222223478775544444414468899999885 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.3
  TIGR00491 487 vlaGvlrvgapli.kedGekvGevreikdrgenvkeakagkavsiaiddrvv 537
                v +Gv++ g+ +   + G +  ev++++ + e+++ea  g++v   +++  v
  MMETSP1174-20130828|805_1 273 VETGVIKPGMVVTfAPTGVQ-TEVKSVEMHHESLAEAMPGDNVGFNVKNLSV 323
                55677777765541344444.5788888888888888888888888877544 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.019       5.7     171     196 ..      21      46 ..       3      50 .. 0.75
   2 !    7.5   0.0    0.0013      0.38      31     126 ..      86     181 ..      83     192 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.019
  TIGR03594 171 eeeepikiaiiGrpNvGKStLvNall 196
                +e+ ++++ +iG   +GKSt + +l+
  MMETSP1174-20130828|805_1  21 KEKVHVNLVVIGHVDAGKSTTTGHLI 46 
                3355799*************876665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0013
  TIGR03594  31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare.....glteeDeeiaklLrksk...kpvilvvNKvdnkkeeae 126
                + g+T D    ++e  +  f++iD +G    +d +     +++ +  ++ad+ ++v+d  +     g++++ ++  + L  ++   k++i+++NK+d+++ + +
  MMETSP1174-20130828|805_1  86 ERGITIDIALWKFESPKYYFTVIDAPGH---RDFI-----KNMITGTSQADAAILVIDSSQggfeaGISKDGQTREHALLAYTlgvKQLIVACNKMDDTTVKYA 181
                6799999999999999***********9...3333.....3333455678888999998762222134444454455555554557999********9876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.18s 00:00:00.85 Elapsed: 00:00:00.56
# Mc/sec: 1065.18
//
Query:       MMETSP1174-20130828|830_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.26s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1174-20130828|831_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|827_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1174-20130828|833_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|836_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    6.3  16.4        1.1    6.2  11.4    1.0  1  TIGR02794 tolA_full: protein TolA
        1.3    5.9   9.8        1.5    5.7   6.8    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  11.4   0.00055       1.1      91     139 ..       9      55 ..       1      61 [. 0.26

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00055
  TIGR02794  91 aaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEa 139
                   qa++++l ++ a+++k+a+ +ae a+   ee+++q e+   +qa+Ea
  MMETSP1174-20130828|836_1   9 RLRQAEEAKLGADTARQAKEAQlQAEIARM-TEEAQRQTERL--RQAEEA 55 
                111111122222222222222222222222.12222222111..112222 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.8   0.00071       1.5      13      61 ..       8      56 ..       2      62 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00071
  TIGR01554 13 kelkkltedekeeeaeeekkekdalkaeidkleaeierleea.aaeeeak 61
               + l++ +e+ k+ ++ ++++++++l+aei+++++e +r+ e+ +++eeak
  MMETSP1174-20130828|836_1  8 ERLRQ-AEEAKLGADTARQAKEAQLQAEIARMTEEAQRQTERlRQAEEAK 56
               44454.444455556666677777*****************963333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 251.98
//
Query:       MMETSP1174-20130828|848_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 278.64
//
Query:       MMETSP1174-20130828|857_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|861_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 741.65
//
Query:       MMETSP1174-20130828|865_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 225.48
//
Query:       MMETSP1174-20130828|867_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1174-20130828|869_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|870_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   10.1   4.4      0.038   11.0   1.8    1.4  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   9.3e-06     0.038      29      56 ..      62      89 ..      59     100 .] 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.3e-06
  TIGR00599 29 ChvCkdffkaPvltsCsHtFCslCiRrc 56
               C +C    + Pv  +C+H FC +C+   
  MMETSP1174-20130828|870_1 62 CAICLGPPERPVKLPCNHEFCRVCVGAL 89
               99999999****************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 399.97
//
Query:       MMETSP1174-20130828|874_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|876_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 149.36
//
Query:       MMETSP1174-20130828|875_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|881_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|880_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 181.93
//
Query:       MMETSP1174-20130828|877_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|885_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 222.50
//
Query:       MMETSP1174-20130828|887_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 248.98
//
Query:       MMETSP1174-20130828|891_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|886_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.23s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1109.42
//
Query:       MMETSP1174-20130828|897_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|901_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|905_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|892_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-64  212.2   2.2      1e-63  212.0   1.5    1.0  1  TIGR01018 rpsD_arch: ribosomal protein S4
    1.1e-09   36.2   1.4    2.3e-09   35.1   0.5    1.8  2  TIGR01017 rpsD_bact: ribosomal protein S4
    0.00043   17.5   0.0    0.00061   17.0   0.0    1.2  1  TIGR00478 tly: hemolysin TlyA family protein


Domain annotation for each model (and alignments):
>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   1.5   7.4e-67     1e-63       8     161 ..      11     166 ..       4     167 .. 0.96

  Alignments for each domain:
  == domain 1    score: 212.0 bits;  conditional E-value: 7.4e-67
  TIGR01018   8 rkkyetPkhPwekerlerekklvakyglrnkkelWkaetllrkyrraarellala..dekrkkeaeallkrlvrlGildeenaklddvlslkvedvlerrlqtlvykkGlaktikqarqlivhghiavdgrvvtsPsylvkkeeekkidfakssPl 161
                 +  +tP++P+ekerl++e kl+++yglr k+e+W++++ l+k+r+aarell+l+  d+kr +e+ all++++r+G+lde++ +ld+vl+l+ +++lerrlqt v+k+Glak+i++ar+li ++hi+v ++ v++Ps+lv++++ek+idfa +sP+
  MMETSP1174-20130828|892_1  11 SSTSKTPRRPFEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARELLTLDpkDPKRLFEGPALLRKMTRYGLLDEDQKELDYVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVDSEKHIDFAITSPY 166
                45579*************************************************98899************************************************************************************************8 PP

>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.41   5.7e+02      98     111 ..      48      61 ..      14      63 .. 0.75
   2 !   35.1   0.5   1.6e-12   2.3e-09      86     134 ..     105     153 ..      92     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.41
  TIGR01017  98 rlgfaktraaArQL 111
                +l +ak r+aAr L
  MMETSP1174-20130828|892_1  48 QLALAKIRKAAREL 61 
                45667777777776 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 1.6e-12
  TIGR01017  86 ellesRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpg 134
                +lle+RL + v++ g+ak++++Ar L+   hi v ++ v++ps++v+  
  MMETSP1174-20130828|892_1 105 KLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVD 153
                689******************************************9965 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.4e-07   0.00061       1      46 [.     110     155 ..     110     173 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.4e-07
  TIGR00478   1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdak 46 
                rL++  +k+gl++s ++a+ li++ ++ v k+ v+ Ps+lv  d++
  MMETSP1174-20130828|892_1 110 RLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVDSE 155
                788889********************************99866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|900_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|909_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|916_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1174-20130828|912_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 538.38
//
Query:       MMETSP1174-20130828|914_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1035.91
//
Query:       MMETSP1174-20130828|920_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 168.29
//
Query:       MMETSP1174-20130828|926_1  [L=988]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00045   17.2   0.0      0.098    9.5   0.0    2.3  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
     0.0077   13.3  62.9      0.015   12.4  43.6    1.3  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   4.8e-05     0.098      23     117 ..      39     133 ..      27     148 .. 0.83
   2 !    5.3   0.0   0.00092       1.9      56     126 ..     202     272 ..     181     309 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 4.8e-05
  TIGR03866  23 isvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkv 117
                + + d et + +k+++v e P   +     k+ +++asd+ ++++++ +t e +ke+ +  d  ++v     + + i+  dd ++ + + ek+  
  MMETSP1174-20130828|926_1  39 VFLWDYETCNQIKNFDVCELPVRSARFIVRKQWFITASDDMHLRIFNYNTMEKIKEFEAHADYIRYVEVHPSQPFIISAADDMTMKLWNWEKSWE 133
                556688888888888888888555555667889******************************99998888888899999999888777666655 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00092
  TIGR03866  56 yvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGve 126
                +++ +d+++v++ d +t++ +++l    +    vl      + i+  +d +v +  +++ ++ + ++ G+e
  MMETSP1174-20130828|926_1 202 LLSGADDNMVKIWDYQTKACVQTLDGHANNVCAVLFHPRLPIIISGSEDGTVRIWHTTTYRAETTLNYGME 272
                45667888888888888888888877766666666666667777888888888777777777666666666 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4  43.6   7.1e-06     0.015      47     179 ..     854     975 ..     843     986 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-06
  TIGR02794  47 vaqqanrlqqqekkaakkepkpeepkqerqkkleqqae.eakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakee.AakkaEeeakakaaaeakkkaEa 179
                +++qa+ lq qe+k+a+++     p+ ++++++e++a+ ea+    ++++r+++lek+ a++++a++ +ae+a   k++++k+        aaE++a+++a+a  e+ a+e+ Aa +a++e++a ++a+a k+a++
  MMETSP1174-20130828|926_1 854 FKTQAAALQLQEEKQAAPP----SPPSATEEQEEETARlEAERLVVEDATRKANLEKEAAERAAAERaAAEKATADKAAAEKA--------AAEQAAAEQAAA--EQAAAEKaAAEQAAAEKAAAEKAAADKAADE 975
                5678888999998888888....444444445555555577788888899999996666666665554444444444444444........445544444444..4444333334444444444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:01.01
# Mc/sec: 1291.14
//
Query:       MMETSP1174-20130828|929_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|936_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 192.63
//
Query:       MMETSP1174-20130828|941_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|940_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-141  468.9   0.8   5.2e-141  468.1   0.6    1.4  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
   5.9e-132  438.5   0.4     1e-131  437.7   0.3    1.4  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   1.5e-114  381.1   0.6   2.5e-114  380.4   0.4    1.3  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   4.2e-108  359.9   0.4   6.8e-108  359.2   0.3    1.3  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    6.6e-98  326.4   1.5    1.1e-97  325.7   1.0    1.3  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    3.5e-90  301.0   0.6    6.3e-90  300.2   0.4    1.3  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    2.7e-76  254.9   0.0    6.7e-76  253.6   0.0    1.5  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    7.7e-73  243.6   0.7    1.2e-72  243.0   0.5    1.2  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    5.8e-63  211.1   0.2      1e-62  210.3   0.1    1.3  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    9.4e-53  177.3   0.0    1.3e-52  176.8   0.0    1.1  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    1.6e-52  176.6   0.0    2.1e-52  176.2   0.0    1.1  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    8.1e-15   51.9   0.0    1.2e-14   51.3   0.0    1.2  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    4.2e-06   23.1   0.0      1e-05   21.8   0.0    1.6  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.1   0.6  1.7e-143  5.2e-141       1     466 [.      40     520 ..      40     521 .. 0.94

  Alignments for each domain:
  == domain 1    score: 468.1 bits;  conditional E-value: 1.7e-143
  TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgip...sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkima.aaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklG..dgfdeet.............elGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGrengvaaleeytev 466
                fi+G+yv+a++g  ++++nPan+evia++++a+++d++ a+ aa  a++ +  ++a +r  +l r a l+ k++e++a +e+ld Gk+ + +  +di  + d++ +faG adk++G+ii++++    + a++r+ep+Gv++ i +wn+Pl +a+wk+aP la+G++lvlk se tPl+ l + +l++eaG+P G +n+v+G+g  +Ge ++ h  ++k+++tG+   G++i+a +a ++lkkv+lelGGks +i+ +da+l+ a+    ++ f + Gq c + +r+l++++i+++f++k+v+ +k ++ G  ++++ +t             +lGP i   + +k++ yie gk+egak + GGk+  +     G f++Pt+f+dvtddm+i +eeifGPv+ +l+f+s++e+++ran ++yGl agv ++d+  a  +a++l+aG vw+n+y++     PfGGyk+sG G ++g  al++yt  
  MMETSP1174-20130828|940_1  40 FINGAYVNAKSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANNVDIGLAIDCFRYFAGWADKQGGKIINTTQGtanTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAaSAESNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGpcEAMKVATdvggdkptavpilDLGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGN----RGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFDNACPFGGYKESGWGSDKGEYALKNYTIT 520
                9**********************************************************************************************************************9865434689*****************************************************************************************************998577889******************************************************************99998554566665111111223333346899999************************99875....579**********************************************************************************************************965 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.7   0.3  3.3e-134    1e-131       3     478 ..      39     527 ..      37     530 .] 0.92

  Alignments for each domain:
  == domain 1    score: 437.7 bits;  conditional E-value: 3.3e-134
  TIGR02299   3 hlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvr.kavaraaenfrffadkaeea...kdgetlpvdeflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngad.tlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvG..dPldeetev.............GPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGigreGGdysfdfytetknvaval 478
                ++i+G +v+++sg  f+t++Pa++ev+as+ + g++d+d av+aa +af+ ++++ a +r+ +l++ a liekh ++iav+esld G++ ++ +   +  a + fr+fa  a+++     ++t  + + l yt + p+Gv+g i Pwn P+++++wkiaP+la+G+t vlk +e +Pl+   l++l++eag P+G ln+v+G+G+ +G+ + +h  +k ++f+G++  G++i++++a+ +lk++slelGGks +i+ +da+l+ a  a    +f + G+ c assr+l++esi++ fv+k+++ +k++r G  + +   t+v             GP i+e  ++k+++y+e ++ eGa+ l Ggk++ +       rG +vaPt++ d+ + m+i +eeifGPv+ ++ f++++ea+  an   yGl + v ++dvg a  +a++leaG ++vns ++ d   PfGG k+sG g + G+y+++ yt tk v++++
  MMETSP1174-20130828|940_1  39 LFINGAYVNAKSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANnVDIGLAIDCFRYFAGWADKQggkIINTTQGTANTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAEsNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGpcEAMKVATDVggdkptavpildlGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGN-------RGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFDNACPFGGYKESGWGSDKGEYALKNYTITKCVMIPI 527
                79****************************************************************************************999834567899******98887541113334444558999*****************************************************************************************************99988637*****************************************************************999988333343333331111111133333899***************************99877.......9******************************************************************************************************************9987 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.4   0.4  7.9e-117  2.5e-114       2     479 ..      38     525 ..      37     527 .. 0.93

  Alignments for each domain:
  == domain 1    score: 380.4 bits;  conditional E-value: 7.9e-117
  TIGR03216   2 knfidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadg.vkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaa...............elGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiGreGGvhslefytelknvcv 479
                + fi+Ga+v  +s+ +f+ ++p++++via++++agk+++d+av aa +a++  ++k+++ +r ++l++ a  ie+  ++    e  d Gkp+++a+++di  ++  fr fa  + + + ++ +++    +++l y+  +p+Gv g i pwn+pl++ +wk+ap la+G t+v+k se+tp +  +l+ +++e+G p+G  n+v+G+G d +Ge+++rh +++ i+ftG +  G  i+ a+a++ +k+vslelGGk a i+  da+ld+a  ++    f n Gq c ++ r+ ++  i+d fv+++ + a++l+ G  e  ++               +lGp i +   +k+++y +  + eGa+ + GG         + G +v pti+++++d+ ++ keeifGpv ++  f s+ e++aran++ yGl a v ++d+ +a  +a++le+G vwvns+   d   pfGG k+sG G + G ++l+ yt +k v++
  MMETSP1174-20130828|940_1  38 RLFINGAYVnaKSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEV-YRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANNVDIGLAIDCFRYFAGWADKQGGKIINTT-QGTANTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYG-DPTGELISRHMGIKKIAFTGSSGIGRRIVAASAESnLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGPCEAMKVatdvggdkptavpilDLGPQIDELQFNKIMGYIESGKAEGAKCLLGGK-----RVGNRGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFDNACPFGGYKESGWGSDKGEYALKNYTITKCVMI 525
                569******6667789**********************************98.9****************************************************************9999875.556799**************************************************************************9.578****************************998548**************************************************************999999997654322111111111122333689****************************95.....33468***************************************************************************************************************99998 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.2   0.3  2.2e-110  6.8e-108       2     448 .]      57     521 ..      56     521 .. 0.92

  Alignments for each domain:
  == domain 1    score: 359.2 bits;  conditional E-value: 2.2e-110
  TIGR01780   2 vnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeak.gevlyaasyleWfaeeakrvyGdviaslqsdkrll..vikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsas.tvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGd..........Gldegvtv.....GplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglisevvipfGGvkesGlGregskyGieeylevk 448
                +nPa+ e i+++ +++ +++++a++aa++a++ y++++a +r ++l +++ li ++++++a + +l+nGkp + a+  ++  a   +++fa  a +  G++i+++q   + l  + ++P+Gv+++i PWnfP  m + k ++ la Gct+v+k +e+tPls l l +l ++aG+P g+ln+v + ++ +G+ ++ +  ++k++ftGs+ +G+ +++ sa+ ++kkvslelGG++ +i+ +da+ld+a        f n+gq c  + r+++hes++d f+kk+++  k+l+ G           G d+ ++v     Gp i+e  ++k+   ie   ++Gak ++gG kr  + g+f++Pt++sdvt dm++ kee fGP+  ++kf++++e+va an + +Gl a + s+d+ + i +a+ele G v vn+    ++ +pfGG kesG G + ++y +++y+ +k
  MMETSP1174-20130828|940_1  57 MNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANnVDIGLAIDCFRYFAGWADKQGGKIINTTQGTANTLayTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAEsNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGPceamkvatdvGGDKPTAVpildlGPQIDELQFNKIMGYIESGKAEGAKCLLGG-KRVGNRGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFDNACPFGGYKESGWGSDKGEYALKNYTITK 521
                69*********************************************************************99886279************************977655544114569**********************************************************************************************9999888527*************************99999999*****************************999999988422222222223444443234444999***************************.7777889*****************************************************************************99999*************************9887 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.7   1.0  3.4e-100   1.1e-97       2     471 ..      37     525 ..      36     526 .. 0.92

  Alignments for each domain:
  == domain 1    score: 325.7 bits;  conditional E-value: 3.4e-100
  TIGR03374   2 dklliegklvag.egekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyl..eghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdi.lpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaas.ikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigape..........dest.....elgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgygkdmslygledytvvrhimv 471
                ++l+i+g  v+   g k + +npa  evi+++ +a ++++d av aa +af  + + +   r ++l ++a  ie+  e++a +es + gkp h + n +i   +d fr+fag a    g             +  r +p+gv  +i pwn+pl+maawk+ap+la g  +vlk se+tpl+ l l +l+++  +p+g +n++ g g+  g+ ++ h  ++ +++tgs   g  i+a +a s +k+  +elggk+ +i+ +da++d+ +       f n gq c a+ ri +  +i+d++v+k+ +   tl+ g  e          d+ t     +lgp + + +++++++++e  ka +  k + gg++v  +gy+ apt++++  +d +i ++e+fgpv+ +  f  +++ v  an+s ygl + v ++dvg a  ++  l+ g  wvn++  +    p gg k sg+g d   y l++yt+ + +m+
  MMETSP1174-20130828|940_1  37 TRLFINGAYVNAkSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANNVDIGLAIDCFRYFAGWADKQGGKIINTTQgtANTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAgFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAESnLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGPCEamkvatdvggDKPTavpilDLGPQIDELQFNKIMGYIESGKAEG-AKCLLGGKRVGNRGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFDNACPFGGYKESGWGSDKGEYALKNYTITKCVMI 525
                5899****998626899*************************************************************************************************99998776544300334467899***************************************************98755******************************************99997549************************99999999****************************9999999988654222222222233333344479*********************87.58999***************************************************************************************************************************8 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.2   0.4     2e-92   6.3e-90      34     493 ..      38     510 ..      14     524 .. 0.90

  Alignments for each domain:
  == domain 1    score: 300.2 bits;  conditional E-value: 2e-92
  TIGR01237  34 plvinGeeveteaki..dsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaea.daevaeaidfleyyaremiklakskevlsieGeknrylyi...plGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadv...............qvgpvidqksfdkikeyielgkaeg.klvlggedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtdskaG 493
                 l+inG +v++++ i  +++npa+ +ev+  + +a  +d ++a++aa+ afe ++k+   +r  +l++ a  +++ r +++ + +l+ Gk+   a ++++  aid ++y+a  + k   +k  ++ +G  n + y+   p Gv+ +i pwnfpl +++   +  +  G + vlk +e++++   +l ++++eaG p+G l+ v G G+  Ge +  h  ++ i+ftGs  +G ri + +a        lk+v  elGGk a+i+ e+a++++a+ a   + f   Gq c a sr++++e+++d++v+++v+ +k+l+ g+ +  +v               ++gp id+  f+ki++yie gkaeg k +lgg+  +++Gyf+ ptif+dv  + ++ +eeifGpv+ +l+ +   ea+  ans+ ygl  gv+s+   +    ++e+e G +++n           pfGG+k sG +s  G
  MMETSP1174-20130828|940_1  38 RLFINGAYVNAKSGIkfNTMNPAN-EEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVAnNVDIGLAIDCFRYFAGWADKQG-GKIINTTQGTANTLAYTrhePIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAE-----SNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGPCEAMKVatdvggdkptavpilDLGPQIDELQFNKIMGYIESGKAEGaKCLLGGKRVGNRGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSY--DNFDNACPFGGYKESGWGSDKG 510
                689*******998652279***96.79***************************************************************99877369**************999876.899999*******99865559**************98888887788889999****************************************************************998885.....67******************************************************************99988766543211111111111232357899*******************857899******************************************************************99999999**********975..5677889***********9887 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.0   2.1e-78   6.7e-76       9     471 ..      42     526 ..      36     527 .. 0.86

  Alignments for each domain:
  == domain 1    score: 253.6 bits;  conditional E-value: 2.1e-78
  TIGR03250   9 aGekvsrda..vievrepydgevvgtvpkasvedvrralevaa...ayrskltryerskileraaellaarkeeisdlitlesGlskk.dslyevgrvadvlklaaaevlrddgqifscdltphgkkr.kvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaa...kagykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyG..dpldrsv.............dlGtvideaaaklfeerveeavaeGarlllgnkrdGa...lyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGykeGvqealksftnlktyslp 471
                +G  v+ ++  + + ++p ++ev++ + +a  +d+  a++ a+   +   k++  +r  +l r a l+ +++e+i+ + +l+ G   +     ++g ++d +++ a  + ++ g+i     t++g +    +t +ep+ gv  ai p+n pl + a k+ap++a    +vlk sek+pls l+l  l+ eaG+p+  l++v G     ++ +  +  ++ ++ftG+  iG++i a   + + k++ lelGG   +i+ eda+ld+aa     G + n Gq c a  ril++es+ d+f++ +v+ +++l+ G  + +  ++             dlG  ide   +++   +e+  aeGa+ llg kr G      apt++  v++++++ +ee fGpv  +++f++  +a++ +ns+ ygl +gvc+ ++ +   +++ele G+v v     +  + +pfGG k+sG G+ +G   alk++t +k + +p
  MMETSP1174-20130828|940_1  42 NGAYVNAKSgiKFNTMNPANEEVIASMHQAGKDDIDDAVDAATsafEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHvANNVDIGLAIDCFRYFAGWADKQGGKIIN---TTQGTANtLAYTRHEPI-GVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAasaESNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGpcEAMKVATdvggdkptavpilDLGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGNrgyFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFD-NACPFGGYKESGWGSDKG-EYALKNYTITKCVMIP 526
                5555554441155789*********998887777777766654211455689999*****************************976515678*********************9985...55555540568888997.7***************************************************************99888877777888**************985411145789******************************************************************998444555555111111111222256778999999999999***************9976422278*************************************************************************999997.789**************9.569********99887 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.5   3.8e-75   1.2e-72       2     473 ..      38     523 ..      37     525 .. 0.89

  Alignments for each domain:
  == domain 1    score: 243.0 bits;  conditional E-value: 3.8e-75
  TIGR01722   2 khlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGk.tledakGdvarGlevvehacsvtslllGetvesv..akdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeav.drllehpdvkavsfvGsvavgeyiyet.gsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvga...........gddpga....elGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhiyGkqGvrfytrlktv 473
                +++i+G++v++ks+ + +  npa++ev+a + +a ++++d av +a  +f  +++ +  +r  +l+r+  l+++hr++ia + s+++Gk t+   + d+   ++   +  + + +  G++++    + +   y+ + p+Gv+  i p+nfp ++  w     +a G t+vlk sek p++ + l +l++eaG p G+ln+v G  +   + +  h  +k ++f Gs+ +g+ i    + ++ k+v    G k  m++  da++++a+ a     +   Gq c a s +++  ++ + +v+++++ a+ +r g+           gd+p+a    +lGp i + + ++++ +i+sg +eGa+ ll G+ +       G fv +t++++v  dmki keeifGpv+ +l+  +  ea++  n s yG G+ + ++d + a     e+e+G v vn           f+G+k+s +G  +  G+  ++ yt +k v
  MMETSP1174-20130828|940_1  38 RLFINGAYVNAKSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKpTHVANNVDIGLAIDCFRYFAGWADKQGGKIINTTqgTANTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTgELISRHMGIKKIAFTGSSGIGRRIVAAsAESNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIhDAFVKKVVDLAKTLRQGPceamkvatdvgGDKPTAvpilDLGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGNR----GYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSYDNFD-NACPFGGYKESGWGSDK--GEYALKNYTITKCV 523
                78***************************************************************************************455556678888899999999999999999886651155555677789***********************9******************************************87665166678****************9987661556779*********************9999888889999*****998888777777799**********99998744444433333455655555689******************************988655....56***************************************************************************876655.56789999999998664..77788888888876 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.1   3.2e-65     1e-62       1     448 [.      39     505 ..      39     520 .. 0.88

  Alignments for each domain:
  == domain 1    score: 210.3 bits;  conditional E-value: 3.2e-65
  TIGR03240   1 lfidGkwra.GqGeslesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGek....eseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGare.tGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgkyda..........e..pqpf..lGavisekaakellaaqekllalggksllelkqleeeaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGGiGasGn 448
                lfi+G++ +  +G +++ ++p+++ev+ + ++a ++++++av aa  af+ + ++ + +r +++ rfa l+e+++e++a v + + gkp+  a+     ++         ++++ G k     + +a++ a  rh p Gv   + p+nfp  +   +i p l  G t+v+k se tpl++  + +l ++aG p G ln+v+G  + tG+ ++ + +i  + ftGss  G  +    a+   k ++lelGG  ++++ e +++d a+       fi  Gq c  + r+l++++   da+++++v++a++l+ g  +a          +  + p   lG+ i e   ++++   e+ +a+g+k ll  k++ +   ++ p+i  dvt+  ++  ee fgp++++l++++  ea+a+an++ +Gl aG+ s d  +   + +e  aG v w +       a pfGG   sG 
  MMETSP1174-20130828|940_1  39 LFINGAYVNaKSGIKFNTMNPANEEVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANNVDIGLAIDCFRYFAGWADKQGGKiintTQGTANTLAYTRHEPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDpTGELISRHMGIKKIAFTGSSGIGRRIVAASAESNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESI-HDAFVKKVVDLAKTLRQGPCEAmkvatdvggdKptAVPIldLGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGNRGYFVAPTIFsDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSV-WVNSYDNFDNACPFGGYKESGW 505
                59***99751579****************************************************************************99887544444444555667787777754111144456667889*********************************************************************76549*******************************************************999999999********999999***98765.69*************988776522222222112112354447999****************************************9769*************************************************************99.7778899999*******99996 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   4.2e-55   1.3e-52      56     487 ..      57     510 ..      38     522 .. 0.84

  Alignments for each domain:
  == domain 1    score: 176.8 bits;  conditional E-value: 4.2e-55
  TIGR01238  56 knpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaia.evreavdflryyakqvedvldeesaka...............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvad....rvl....tlikGamdelkvg......kpirl.ttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfe..lddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpkaG 487
                +npa++ +++  +++a ++++++avd+a +af ++  + a +r  +l r+a l+e+h  ++ ++   + Gk  + a + ++  a+d  ry+a+ ++++ ++   ++               +G+  +i pwnfpl +   +ia  la G t++ k +e+t+l      +l++eaG+p+g+++++ G G+  G  ++ +  i+ ++ftGs+ + r+i  a a+ + ++v+   e GG+ ami+   a  ++  +      f   Gq c a   +++ e + d    +v+    tl +G  + +kv+      kp+     d+Gp id+   ++++ +ie  ka + k     l  ++  ++g fvapt+f    dd++  k+e+fGpv+ ++++ ++  ++ v + n++ ygl  Gv sr  +    i ++ ++G v+vn           pfGG   sG G   G
  MMETSP1174-20130828|940_1  57 MNPANE-EVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESLDNGKPTHVANNvDIGLAIDCFRYFAGWADKQGGKI-INTtqgtantlaytrhepIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAESNLKKVS--LELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDafvkKVVdlakTLRQGPCEAMKVAtdvggdKPTAVpILDLGPQIDELQFNKIMGYIESGKAEGAKC---LLGGKRVGNRGYFVAPTIFSdvTDDMKICKEEIFGPVMQLLKFSSN--AEAVARANSSIYGLGAGVCSRDVGNAIAIANELEAGSVWVNSY--DNFDNACPFGGYKESGWGSDKG 510
                678876.5678999*********************************************************887664327999*********9985544443.333356788899999999***********************************************************************************************9998888877755..5*********988887777888888899******9988755555665555222234411115667888888876222223455542469******************999887654...445556789**********65479*******************988..6889************************************964..4566778*****9999998765 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   6.8e-55   2.1e-52      30     502 ..      35     509 ..       7     523 .. 0.87

  Alignments for each domain:
  == domain 1    score: 176.2 bits;  conditional E-value: 6.8e-55
  TIGR01236  30 leiPlviggkev.vksnelievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqae.idavaelidffrfnvkyarelleqqPsvsapgelnkveyrple..GfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdv..............ddlssf.mgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdr.eaieeaekklrfaaGnfyindkstGavvgqqpfGGarlsGtndka 502
                le  l i+g  v  ks+ ++++++Pa++ +++a++++a+++d+ +av+aa +a + + ++   dr  ++++ a l+  k+re+i+ +  l+++k ++ a+ +d +  +id fr+ + +a +  ++    +++g+ n+  y   e  G   ai P+nf  + a    aP l mG + v k s+ + ls  +l ++++eaG+Ppg +n+v + g   ++ +  +  +  + ftGs  + +++    a+      n  +++ e GGk  +++ + a+++e+++a   g f   Gq c a sr+ + +s+ + + +++++ +k ++ g+               + +    +g+ ide +f+ki+ +ie+ k++    + l GGk    +Gyfv Pt+      + k+ keeifGPv+ +  +  +  + + +   ++s y+l   v ++d  +ai  a++ l   aG  ++n           pfGG + sG     
  MMETSP1174-20130828|940_1  35 LETRLFINGAYVnAKSGIKFNTMNPANE-EVIASMHQAGKDDIDDAVDAATSAFEVYRKVAAGDRRDMLYRFAGLIE-KHREQIAVVESLDNGKPTHVANnVD-IGLAIDCFRYFAGWADKQGGKII-NTTQGTANTLAYTRHEpiGVCGAIIPWNFPLVMAAWKIAPCLaMGCTLVLKLSEKTPLSGLMLGHLINEAGFPPGTLNIVNGYGDPTGELISRHMGIKKIAFTGSSGIGRRIVAASAE-----SNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIHESIHDAFVKKVVDLAKTLRQGPCeamkvatdvggdkpTAVPILdLGPQIDELQFNKIMGYIESGKAEG--AKCLLGGKRVGNRGYFVAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNA-EAVAR--ANSSIYGLGAGVCSRDVgNAIAIANE-L--EAGSVWVNSY--DNFDNACPFGGYKESGWGSDK 509
                4556678887651466778999999986.68*******************************************995.89**************988876266.9**************99877766.799*********9888668999******************9989**************************************************************999988654433.....35667999******************************************************************98999998888654422222236899*****************966..899****************************************9997653.44443..57899**********97356766665.4..6999999954..566778899999999965444 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.9e-17   1.2e-14      24     426 ..      61     468 ..      39     484 .. 0.73

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 3.9e-17
  TIGR02278  24 tGevlarvsseGld.laaavayarevGgkalraltfheraaklkalakylserkeelyalaa.ttG.atrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivG...svgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarl........akvkl.....Gd.Pre.edvklGplvsveqredveaavaallaagaevrlgdpeeld.GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadp 426
                + ev+a +  +G d + +av  a     +  r+++  +r ++l  +a  + +++e++  +   + G  t+  n vdi  +i  +  +a  + +    ++++    ++  +   ++ +rh      Gv+  i  +nfP      k+aP++  G   ++k +  t      l +li e+g+ P G+l+++ G     g+l+       ++aftGs   + ++ a  +  ++  + s e     a ++ ed++ de  ++ ++      l +  Gq c a  r+l+ ++  +a ++ +++          +++k+     Gd P      +lGp ++  q +++   ++   a+ga+  lg++   + G f+aPt++  + ++  ++ + e fGPv  ll ++++aeav  a      l a + + d 
  MMETSP1174-20130828|940_1  61 NEEVIASMHQAGKDdIDDAVDAA-TSAFEVYRKVAAGDRRDMLYRFAGLIEKHREQIAVVESlDNGkPTHVANNVDIGLAIDCFRYFAGWADK--QGGKIINT--TQGTANTLAY-TRH---EPIGVCGAIIPWNFPLVMAAWKIAPCLAMGCTLVLKLSEKTPLSGLMLGHLINEAGF-PPGTLNIVNGygdPTGELISRHMGIKKIAFTGSSGIGRRIVAASA-ESNLKKVSLELGGKSAMIICEDANLDEAAIACHI-----GLFINMGQCCCASSRILIHESIHDAFVKKVVDLAktlrqgpcEAMKVatdvgGDkPTAvPILDLGPQIDELQFNKIMGYIESGKAEGAKCLLGGKRVGNrGYFVAPTIFS-DVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGAGVCSRDV 468
                55677777777764255555544.445566788888888888888888888888888777541344246777888888888888888888877..22333322..2222222332.233...44689999*****************************99999888888888888885.88******9843347899998888899**********99877654.3444567888899999*******98877777666.....577889************9999888777655543000111123444321221221221123589999***************************9998779999***975.5557788999********************9998887777777777775 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.3e-08     1e-05     243     473 ..     221     461 ..     162     477 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.3e-08
  TIGR02288 243 arevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqna...rqaqvytekaGvntviiestddlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadl.......aaaidkllgddaravall..G....aiqsedtvariaearalG.evlldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarrvvrekGa 473
                  +++ eaGf p  + ++    ++++ + ++ +  ++ + ftGs+  G  + + +      +v  e+ G   +ii    +l   +      l +  Gq c ++  il+  + i+ +  +k  d  a++l        +   ++ gd+  av +l  G     +q ++++  i++ +a G + ll  k++ +  +      +p ++   + d +   ee+fGp+   ++  + a+av  a+ ++   Ga
  MMETSP1174-20130828|940_1 221 LGHLINEAGFPPGTLNIVNGY-GDPTGELISRHMGIKKIAFTGSSGIGRRIVAASaesNLKKVSLELGGKSAMIICEDANLDEAAIACHIGLFINMGQCCCASSRILIH-ESIHDAFVKKVVDL-AKTLrqgpceaMKVATDVGGDKPTAVPILdlGpqidELQFNKIMGYIESGKAEGaKCLLGGKRVGNRGYF----VAPTIFSDVTDDMKICKEEIFGPVMQLLKFSSNAEAVARANSSIYGLGA 461
                468899*******99988766.99************************99876541114468999**********9999999999999999999*************96.56766666555552.3333111111022334567888899888633332224677888899999999997888888888877654....468888777778899999*******************999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.92u 0.22s 00:00:01.14 Elapsed: 00:00:00.72
# Mc/sec: 971.59
//
Query:       MMETSP1174-20130828|944_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1075.32
//
Query:       MMETSP1174-20130828|946_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-33  113.1  20.9    6.2e-28   95.6   7.9    2.1  2  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   7.9   1.5e-31   6.2e-28       1     275 [.       9     284 ..       9     290 .. 0.92
   2 !   23.0   1.3   1.7e-09     7e-06     287     365 ..     316     394 ..     314     406 .. 0.95

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 1.5e-31
  TIGR00797   1 PailaniaqpllslvDtafvGhlg.pveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllv.avvlifaakpllslmg..adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilkakkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsa 275
                P++++ +++pllsl+Dta vG     ++Laa+g ++ +      +l +l+  tt+ +a a +  +++ +sr ++++ll  ++ g++  +++l +++ p+++ +   a ++++ la +Y+ri+ +g    l sl+lq    +  +  +pli++ i+++ n   d +l+ ++g+G+ GaA+Atvi+q+l++++ll y +  +k+ ++    l  + +    +l+l +  ++++i  + +++ +a+ +a  G  +lAahqv++ v  ll+ +   l+ +v+ 
  MMETSP1174-20130828|946_1   9 PLLAVWLSNPLLSLIDTAAVGNFAgVYHLAALGPATALCDQGTYLLSFLTIVTTSQLASAFARNDKKDASRNVEDALLASFICGVAWsTILLSPLGVPVVKSFIpkAAQDILPLALSYARIRAFGFIPALASLVLQASSLARREISIPLIAVGISSLGNLLGDGLLVGRLGMGVNGAAIATVIAQILSCAILLKYEI--PKLVRSD-RGLGLRVKEAAHFLALCVRPAIALIGKVSINFNVAVTAATCGLPSLAAHQVCTGVYFLLSPMGEALSQTVQN 284
                78889999**************97699*********************************************************9862677889****99866556*****************************************************************************************99..4666663.5666999999*******************************************9988877766666666665 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.7e-09
  TIGR00797 287 krakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkva 365
                k+a++ ++v+  + l+lg++ ai+  + + f+++lft   +v++ ++ + ++v++ +++ al ++l+Gvl+++ dt ++
  MMETSP1174-20130828|946_1 316 KDARRLVKVVAAFALALGIFDAIFGAALPAFFPGLFTPVAAVIKEMKVIAPLVGGCLLFHALSTTLEGVLFATRDTVFL 394
                899**********************************************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.50
# Mc/sec: 1206.38
//
Query:       MMETSP1174-20130828|950_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|959_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1174-20130828|962_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|963_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1174-20130828|964_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|967_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 243.98
//
Query:       MMETSP1174-20130828|972_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-16   56.2   0.0    2.8e-11   40.6   0.0    2.3  2  TIGR00653 GlnA: glutamine synthetase, type I
      2e-12   44.2   0.1    9.4e-07   25.5   0.0    2.6  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.6e-06    0.0054      45     138 ..     105     191 ..      65     197 .. 0.78
   2 !   40.6   0.0   1.3e-14   2.8e-11     197     386 ..     232     415 ..     214     419 .] 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.6e-06
  TIGR00653  45 iaFDgssveGfksieesDlllkpdpetlvivPfraekvlrvicdvyepvtkepyerdpRsiakraeeelktklgdevyfGpEaEFflfdkvefk 138
                  +Dgss +     ++s++++kp+  +++ +Pfr  + ++v cd y+p  ++   +++R  a ++ +++     +   fG E+E+ lf+ ++++
  MMETSP1174-20130828|972_1 105 WNYDGSSTNQ-APGDDSEVIMKPK--AVFKDPFRLGDNVMVLCDTYTP-AGDALPTNTRAPAAEVFKQYP---DEVPWFGLEQEYTLFNMDQVT 191
                5689999875.5568999999876..689*******************.889999999988888777775...56679**********998876 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 1.3e-14
  TIGR00653 197 lglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgd..ngsGmHvhlslwkdgenlfageegyagLsetalyyigGilkHakalaAltnptvnsYkRLvpGyEAPvy..laysaknRsaliRiPasa.npkakRiEvRspDpsanpYLafaallmAgldGiknkidpgep 386
                 gl++  +  Ev ++q E +i  +  v+a+D++ + +y+ + v +      t  pKp+++   ng+G H+++s  k  ++   g ++      +a y +g   kHa+ +aA  +   n   RL   +E   +   +y+  nR  +iRiP +a       +E R p +   pY+    ++   ++ ++  + p+  
  MMETSP1174-20130828|972_1 232 AGLDISGTNAEVMPGQWEYQIGPSIGVDAGDQMWISRYILQRVCEDFQIFCTLHPKPITKGdwNGAGCHTNFSTEKMRKA--GGMKA----ILEAIYKLGA--KHAEHIAAYGEG--N-ELRLTGKFETASMdtFSYGVANRGCSIRIPRTAeADGCGYFEDRRPSSNMDPYVVTGLIMNTCMEDVEVPVIPPSN 415
                6899999999************************************************9752378888888876654443..34442....3479999995..********9876..3.469******98753478999*************44555689**************999999999999877777665 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.6e-10   9.4e-07      19     242 ..      77     306 ..      67     315 .. 0.74
   2 !   15.9   0.0   3.9e-07   0.00079     303     363 ..     349     415 ..     313     419 .] 0.82

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.6e-10
  TIGR03105  19 dllGvakaklvPvealdalakegagfaGfavsg..lglePadadllavpdldsliqlPwkp.evawvaadlv.vegkpvelapRvvlkkllaeaaekgftlktGveceffllrreedgklsvaDk.aDklakpcYDqralmrry..dvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfa..drtGnGlhlhlsll 242
                d  G+ ++k+    a +    +  +f  +  +g   +++P d d  ++  ++++++ P++  +  +v +d++   g ++++++R    ++ ++  ++    + G+e e+ l++ ++   l  ++      + p Y   +  + +   v ++  +a    G+d+  ++ e   Gq+e +   +  + + D++ + +y+++++ e+  + +t+ PkP +  d  G G+h+++s  
  MMETSP1174-20130828|972_1  77 DAAGAVRSKTRSLAAKKVADGNPDKFPEWNYDGssTNQAPGD-DSEVIMKPKAVFKDPFRLgDNVMVLCDTYtPAGDALPTNTRAPAAEVFKQYPDE--VPWFGLEQEYTLFNMDQVTPLGWPEGgFPGPQGPYYCSCGPENAFgrAVSDAHYKACLYAGLDISGTNAEVMPGQWEYQIGPSIGVDAGDQMWISRYILQRVCEDFQIFCTLHPKPITkgDWNGAGCHTNFSTE 306
                555555555555555555555555555544443114566654.44556677889999997514566789987468999******9999999998776..5899*********99988777766551344555666666666554214556777888899********************************************************873357899****99965 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.9e-07
  TIGR03105 303 tWaPalisyggnnRthmvRiP......dagRlelRlaDgaanpYlvsaavlaaGLdGierkldpgkr 363
                t +  + syg  nR  ++RiP      + g +e R + + ++pY+v+ +++ + ++ +e  + p+++
  MMETSP1174-20130828|972_1 349 TASMDTFSYGVANRGCSIRIPrtaeadGCGYFEDRRPSSNMDPYVVTGLIMNTCMEDVEVPVIPPSN 415
                5566789**************6543322478************************999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1316.75
//
Query:       MMETSP1174-20130828|981_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|985_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1174-20130828|993_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|995_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.25s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|996_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1174-20130828|999_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 204.81
//
Query:       MMETSP1174-20130828|1005_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.79
# Mc/sec: 1311.54
//
Query:       MMETSP1174-20130828|1003_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-53  180.4   0.0    1.4e-53  180.1   0.0    1.0  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    7.4e-33  111.8   0.0    1.1e-31  108.0   0.0    1.9  2  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    7.4e-12   42.7   0.0    9.9e-12   42.3   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.2e-09   35.2   0.0    1.8e-09   34.7   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.2e-06   25.7   0.0      2e-06   25.0   0.0    1.4  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.0   1.7e-56   1.4e-53     127     411 .]      98     395 .]      70     395 .] 0.87

  Alignments for each domain:
  == domain 1    score: 180.1 bits;  conditional E-value: 1.7e-56
   TIGR03224 127 wsaakpyvnlyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilppgtdekgkphylrqysvasprdgerprynnlaltvkrvte.....dhegnavrgvasnylcdlkkgdkvqvigpfgstflmpn.hpessilmictgtgsapmramterrrrrra...kgeggklllffgartkeelpy...fgp.lqklpkdfidinfafsrtpeep...kryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                 +  ++  vn y ak+p    v    r+   +a  ++  iv+d g + +p  egqs g++ppg +++gkp  +r ys+as r g+  + n  +l v+r t        ++ a +g++sn+lcd k gd+++++gp g  +l+p+  pe++i+m+ tgtg ap r +  r   +++   +++ g   lf+g  + + l y   + p l+  pk+f  +++a+sr+  +    k y+qd + e a++v++ l+ +++++y cglkgm  g+ + l+ v+e++  d+++    l+++g+ h+e y
  MMETSP1174-20130828|1003_1  98 YDMSNIPVNTYKAKTPFMGKVKSVKRIVGPEATGETCDIVIDHGGK-MPYWEGQSYGVIPPGVKDNGKPNTVRLYSIASTRYGDDMTGNTGTLCVRRATYwcpelKADDPAKKGICSNFLCDAKAGDELKMTGPSGKVMLLPEsAPETDIIMVATGTGIAPYRGFIRRLFTEKTpygEDFKGVAWLFLGVANSDALLYdneWQPiLKAHPKNF-RLDYALSREATNAkggKMYIQDKVEEYADEVFERLE-KGAHMYFCGLKGMMPGIQDMLKSVCEKKEIDYDEFIKGLKKKGQWHVEVY 395
                 45566679************************************86.799***********************************************985333225788899******************************7369*****************99877544433111558999*************99555567245579988.689999998776522278***************996.689*********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.018        15     222     277 ..     101     155 ..      76     162 .. 0.84
   2 !  108.0   0.0   1.3e-34   1.1e-31     380     597 .]     165     395 .]     163     395 .] 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.018
   TIGR01931 222 lqveeseyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvw 277
                 +++  ++y  k Pf ++v + ++i g +++ ++  i +d  + ++ y  G + Gv 
  MMETSP1174-20130828|1003_1 101 SNIPVNTYKAKTPFMGKVKSVKRIVGPEATGETCDIVIDH-GGKMPYWEGQSYGVI 155
                 45567899******************************96.56799999*999997 PP

  == domain 2    score: 108.0 bits;  conditional E-value: 1.3e-34
   TIGR01931 380 pltprLYsiassq...kevddevhltvgvvkk.....eaegrarlGgasgflaerlkeddtvkvyveenenfrlPed.kdtpiimigpGtGvaPfraflqeree......egaeGknWlffGnphfaeDfLYqveWqkylkkg.vltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrkekrYqrDvY 597
                 p t rLYsias++      ++   l v  +++     +a+  a++G +s+fl++ +k +d++k+   + +   lPe  ++t+iim+++GtG+aP+r+f+++         e+ +G +Wlf G  + ++  LY  eWq  lk   +  +ld a sr+  +    k+Y+qd++ e ++e+fe l++Gah+Y CG  k m   ++++L  v +k+  +   + +e+++ l+k+ +++ +vY
  MMETSP1174-20130828|1003_1 165 PNTVRLYSIASTRygdDMTGNTGTLCVRRATYwcpelKADDPAKKGICSNFLCD-AKAGDELKMTGPSGKVMLLPESaPETDIIMVATGTGIAPYRGFIRRLFTektpygEDFKGVAWLFLGVAN-SDALLYDNEWQPILKAHpKNFRLDYALSREATNakggKMYIQDKVEEYADEVFERLEKGAHMYFCG-LKGMMPGIQDMLKSVCEKKE-I---DYDEFIKGLKKKGQWHVEVY 395
                 6689*******97332345677789999888744444678899***********.9*******************96379******************9865430111124679********998.5679***********862567********987555569****************************.88899999999999987753.3...45678999998888888887 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.2e-14   9.9e-12     203     403 ..     165     380 ..     156     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.2e-14
   TIGR01941 203 eetvrayslan..ypeek..giiklnvriat..ppfa..naeippGkmssyifslkpGdkvtvsGpfGeffvkdt...daelvfigGGaGmaplrshildllkrlks....krkis.fwyGarskrevfyeedfde.leaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdaped.iefymcGpplmnaaviklledlGverenillddf 403
                  +tvr ys+a+  y +++  ++ +l vr at   p    +   + G++s ++ + k+Gd + ++Gp G++ +  +   ++++++++ G+G+ap r  i  l+ ++       + +  ++ G       +y+++++  l+a+ +nf+   als      n++G   +i + + e   + ++  e   + y cG   m   + ++l+++  e+++i +d+f
  MMETSP1174-20130828|1003_1 165 PNTVRLYSIAStrYGDDMtgNTGTLCVRRATywCPELkaDDPAKKGICSNFLCDAKAGDELKMTGPSGKVMLLPEsapETDIIMVATGTGIAPYRGFIRRLFTEKTPygedFKGVAwLFLGVANSDALLYDNEWQPiLKAHPKNFRLDYALSRE--ATNAKGGKMYIQDKVEEYADEVFERLEKgAHMYFCGLKGMMPGIQDMLKSVC-EKKEIDYDEF 380
                 5799*****975587775336789******944354423344789************************9986551226789****************99998886421112334314579999999*******972577788*********75..46889999999998877666666666642789*****************985.6677777776 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.1e-12   1.8e-09      75     242 ..     210     381 ..     204     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2.1e-12
   TIGR02160  75 GlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvla......aepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldsli.evdevdeaflcGPaalvddaedalkalGvdsekvhlelft 242
                 G+ s+++ +  +aGd l +  P G+    ++++ +   ++va+G+Gi+P    ++  ++      ++ k    l+ +  +s+ +++ +e + +   +p+ f+l   lsre  +a+  +  + ++k++++ d++  ++++  ++++cG ++++  ++d lk++  +++++ ++ f 
  MMETSP1174-20130828|1003_1 210 GICSNFLCD-AKAGDELKMTGPSGKVMLLPESAPETDIIMVATGTGIAPYRGFIRRLFTektpygEDFKGVAWLFLGVANSDALLYDNEWQPILKAHPKNFRLDYALSREATNAKGGKMYI-QDKVEEYADEVFeRLEKGAHMYFCGLKGMMPGIQDMLKSVC-EKKEIDYDEFI 381
                 777888876.59*****************99999***************98888655541111115667788899************************************9998655445.679*******983589999******************9874.66777777775 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.4e-09     2e-06      67     165 ..     210     314 ..     207     375 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.4e-09
   TIGR02911  67 gkvtdevfelkegdklflrgpygngfdv.dnykdkelvvvaggtgvapvkgvve.yfakns...kevkeld.livgfktredilfkedlaewkekinlvltldea 165
                 g  ++ + + k gd+l + gp g  + + ++  + ++++va gtg+ap +g ++  f++ +   ++ k +  l +g  + +++l+ ++ +   + +   + ld a
  MMETSP1174-20130828|1003_1 210 GICSNFLCDAKAGDELKMTGPSGKVMLLpESAPETDIIMVATGTGIAPYRGFIRrLFTEKTpygEDFKGVAwLFLGVANSDALLYDNEWQPILKAHPKNFRLDYA 314
                 6677888999**************99884667899****************997257776523356666654779***********9987666555444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1336.81
//
Query:       MMETSP1174-20130828|1008_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 500.17
//
Query:       MMETSP1174-20130828|1011_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1237.84
//
Query:       MMETSP1174-20130828|1007_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00072   15.3   0.0     0.0016   14.1   0.0    1.4  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.9e-07    0.0016      57     128 ..     293     362 ..     265     377 .. 0.80
   2 ?   -2.6   0.0     0.045   1.8e+02     164     187 ..     434     457 ..     421     460 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.9e-07
   TIGR03903  57 vFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGi 128
                 vFe   G  l  v+++  +++ +   ++ +q L +l   h+  ++h DLkP+n++v  +  +s++ +  FG+
  MMETSP1174-20130828|1007_1 293 VFEPL-GESLFGVMQQYNSISLTAVRKITAQLLCGLRFLHSCRILHTDLKPENVLVVRRP-HSNSELAGFGL 362
                 56543.77788888888888888889999*************************997654.56667777776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.045
   TIGR03903 164 epvtaksDlYaWGLivleCLtGkr 187
                  p  +++D+++ G + +e LtG++
  MMETSP1174-20130828|1007_1 434 RPFKPAADIWSLGCLTFELLTGET 457
                 57789*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 1241.12
//
Query:       MMETSP1174-20130828|1010_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   15.3   9.3      0.019   13.1   6.4    1.8  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
       0.54    5.6   4.5       0.54    5.6   3.1    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   6.4   9.3e-06     0.019       1     105 []       1     111 [.       1     111 [. 0.68

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.3e-06
   TIGR03685   1 meYiyaaLllheagk.eineenlkkvleaaGvevdearvKalvaaLe.dvdieeaiekaaaap....vaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                 m+Yi a  ll   gk + +  ++k+v++aaG evd+a v  +++ +  +  + ++i++             ++     eaa+  +++++ ee+e+eeeee ++ g  ++FG
  MMETSP1174-20130828|1010_1   1 MKYIAAYTLLVLGGKaSPSAADVKSVITAAGGEVDDAAVDLMISEVSaNGALGDIIANGKDKLylcgGGGGGGGGGGGEAAAGGDAAAAVEEKEEEEEEEVDMGGGMDMFG 111
                 7888876666555551456789********************998752557888888876555322222233334444555555555567888888888999999999998 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.1   0.00027      0.54     967     996 ..      71     100 ..      20     106 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00027
   TIGR00927 967 geggsdGGdseeeeeeeeeeeeeeeeeeee 996
                 g+gg+ GG++    +     ee+eeeeeee
  MMETSP1174-20130828|1010_1  71 GGGGGGGGEAAAGGDAAAAVEEKEEEEEEE 100
                 333344444444444333322222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 280.19
//
Query:       MMETSP1174-20130828|1014_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 317.60
//
Query:       MMETSP1174-20130828|1015_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|1020_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   15.0   3.0     0.0008   15.0   2.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0015   14.1   3.9     0.0016   14.1   2.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.023   12.8   0.5        0.5    8.5   0.3    2.1  1  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target
      0.035   11.2   3.1      0.038   11.1   2.1    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.059   11.4   2.7        0.2    9.7   1.1    1.8  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        0.1   10.4   4.0       0.49    8.2   0.3    2.5  3  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.1   1.2e-06    0.0008     402     471 ..       8      77 ..       1      81 [] 0.38

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-06
   TIGR02169 402 lnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaeke 471
                  ++l++e +rl  e +++++e ++  ++ +++e++++el + ++el +++ k +++  + +++ ek+e+e
  MMETSP1174-20130828|1020_1   8 NEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELTAQVGKMTEENGKFAANNEKLEAE 77 
                 3333334444444444444444444444444444444444444444444444444444443333333333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   2.7   2.3e-06    0.0016     396     463 ..       9      76 ..       1      81 [] 0.24

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.3e-06
   TIGR02168 396 aslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                 ++l+ e++rl  e+e++++++e++ +++ +le++++e+ a ++el +++ +  ee  + ++++e+le+
  MMETSP1174-20130828|1020_1   9 EKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELTAQVGKMTEENGKFAANNEKLEA 76 
                 22222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00073       0.5      34      83 ..      22      62 ..       1      69 [. 0.60

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00073
   TIGR03930 34 idalqstWeGaAaqafdaefaewkpaaerlneaLqeiseelrqaakkfeq 83
                ++++ +          ++ fae ++++e+ +++L  +++el +   k+++
  MMETSP1174-20130828|1020_1 22 VEKMSA---------ENEKFAENNAKLEQSVNELGAVKDELTAQVGKMTE 62
                444332.........24667777777777777777777777777777766 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   5.5e-05     0.038      64     129 ..      11      75 ..       2      81 .] 0.49

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.5e-05
   TIGR03752  64 lvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakle 129
                 l +e++ l  e++k+++eNek  ++n +l+++ +++   ++++l+a+  ++++e+ + +++ +kle
  MMETSP1174-20130828|1020_1  11 LEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELG-AVKDELTAQVGKMTEENGKFAANNEKLE 75 
                 3344455555555555555555555555555544443.3555555555555555555444444444 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.1   0.00029       0.2      98     130 ..      14      46 ..       1      64 [. 0.44
   2 ?    6.8   0.6    0.0022       1.5      88     132 ..      32      76 ..      30      80 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00029
   TIGR02894  98 eaeklrkekeklkeeleslqkrneeLekelekl 130
                 e+++l  e ek+ +e+e++ ++n++Le+ +++l
  MMETSP1174-20130828|1020_1  14 EVNRLGGEVEKMSAENEKFAENNAKLEQSVNEL 46 
                 444444444444444444444444444443333 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0022
   TIGR02894  88 fLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkk 132
                 f +n ++ ++++++l   k++l++++ ++ ++n +++ ++ekl+ 
  MMETSP1174-20130828|1020_1  32 FAENNAKLEQSVNELGAVKDELTAQVGKMTEENGKFAANNEKLEA 76 
                 667777777888888888888888888888888888888888876 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.023        16      36      59 ..       4      27 ..       2      36 .. 0.76
   2 ?    8.2   0.3   0.00071      0.49      30      58 ..      19      47 ..      13      51 .. 0.89
   3 ?    3.1   0.1     0.029        20      29      55 ..      53      79 ..      49      81 .] 0.68

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.023
   TIGR02209 36 lqaeieklqkewndLqlEvaelsr 59
                ++a +ekl+ e n+L  Ev++ s 
  MMETSP1174-20130828|1020_1  4 FAANNEKLEGEVNRLGGEVEKMSA 27
                567788888888888888888775 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00071
   TIGR02209 30 nselqklqaeieklqkewndLqlEvaels 58
                  e++k+ ae+ek  +++++L++ v+el+
  MMETSP1174-20130828|1020_1 19 GGEVEKMSAENEKFAENNAKLEQSVNELG 47
                5799***********************98 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.029
   TIGR02209 29 lnselqklqaeieklqkewndLqlEva 55
                l+ ++ k+ +e+ k  +++++L++Ev 
  MMETSP1174-20130828|1020_1 53 LTAQVGKMTEENGKFAANNEKLEAEVG 79
                556667777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.21u 0.24s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|1017_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-28   96.5   0.6    2.1e-22   76.9   0.0    3.2  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.8e-17   61.5   0.0    4.3e-17   60.3   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein
      2e-13   47.9   0.0    8.7e-13   45.8   0.0    2.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
      2e-10   38.0   0.1      4e-10   37.1   0.1    1.5  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    8.3e-06   22.4   0.1     0.0084   12.5   0.1    2.2  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0012   16.0   0.3       0.26    8.4   0.0    2.3  2  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   3.1e-25   2.1e-22     456     663 ..     140     370 ..     125     392 .. 0.74
   2 !    3.7   0.0    0.0041       2.8     702     758 ..     452     515 ..     439     531 .. 0.75
   3 !   12.4   0.0   9.6e-06    0.0065     767     829 ..     576     644 ..     554     659 .. 0.72

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 3.1e-25
   TIGR02956 456 eAeeAnrAKSaFLAtmSHEiRTPlnGvlG....Tle...LL.ad.....tkLtseqqkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslndds.....llfeVeDtGvGiaeeeqetlFkaft......qaegrkksgGTGLGLAiskrlveamdge 663
                 eAe A  A+    A   HEiR  +  vl     T+e   L  ++     ++L+++ ++  +  +   +   + LnD+LD  k+E G  + ++  +dl  L  ++   +++   + g++L+++ +     ++  D++ + Q l Nl++Na+KFT++G+v++r ++n+ +     + + V+DtG Gi +e q+ + +aft      q e+  +++ TG+GL +++ +++++  +
  MMETSP1174-20130828|1017_1 140 EAEAARAAQASVSAHVYHEIRNVVGAVLAladrTTEavdLAfEEsddavKSLPEQVRRLTEHQRVVCQHAVNTLNDMLDVAKMENGTYTPRSDIVDLGDLCRQAAM-LQAPRLKTGVELHIDCPAPGVCIVLSDPILLLQYLTNLLSNAAKFTNKGHVSVRCEVNELTgewiqVKLGVADTGSGIRPEDQHRVLQAFTtgsavpQEEDIASTRSTGIGLRLANLIASILSTD 370
                 5555556666666666666666666666422222111112111111122356666666666666677778899*****************************9865.5555556**********9999999*********************************998889999999*********************93332223346678899*****9999888887766 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0041
   TIGR02956 702 arvLlvEDN.evnamvaqgl....lek..lGhkvtlaesgksAlecleekaFDlallDinLpDt 758
                 ++vL+v+D  ++ +mva+ +    ++     ++  +a sg++A + ++ + F ++ +D +L+++
  MMETSP1174-20130828|1017_1 452 LQVLVVDDQlTMRQMVAMMFqqfcVKYplVKVELQTALSGEEAIRVMRTQTFHIMTMDQQLSEV 515
                 59999999845678888655221222211234456799***********************975 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 9.6e-06
   TIGR02956 767 Lkeleeake....e.lkfi.avsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkkseeea 829
                 ++++ e+ e    + +++i  ++ +v+++d +kyl +g +g+l+KP +  +++++++  l++  ++e  
  MMETSP1174-20130828|1017_1 576 IRQIREEFEksgrKhVPIIfNLTGNVLENDRQKYLLSGSNGVLPKPTKLADMISMIEDSLSTMIEHEYC 644
                 34444333333453488774799************************************9766554443 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   6.4e-20   4.3e-17       3     120 ..      11     129 ..       9     134 .. 0.93

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 6.4e-20
   TIGR00229   3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIterk 120
                 +e+ y  ++++++++i+ vd++Gn+  +N+ +  i+GY++  ++G+++   +i++++r  v+ +++ + +g+ e+   e+ ++ +dG+++ + ++ +p rd +g+ +g+vgi +DIte  
  MMETSP1174-20130828|1017_1  11 QEQEYIRLIDTANAPIFGVDKNGNVNVWNQCASTISGYESCHVMGHHLVSeFISSDYRASVEGVLNSAVKGK-ETANFEFPLIARDGRRVEILLNATPRRDeHGNCVGMVGIGQDITEAR 129
                 7899999****************************************9999*******************76.6777777778**********************************976 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.3e-15   8.7e-13      16     287 ..      23     337 ..       8     384 .. 0.62

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.3e-15
   TIGR02966  16 pdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelke....ylaekka.eep..lelksplneervlev..rivpygeee.....lllvarDvtklk..........rleqmRr...dFvanvsHELrtPLtvlkGyletleeepeeddeaaekalelmeeqskrm...q........sLvedLltLsrlEsaakekeeekvdvaelleelkk.eaealseekehqielevdaavkvkgdeeeLrsalsNLveNAikytpeggeitvrwe..eeeeg...aelsvkDtGeGIaaehlprltERFYR 287
                 + +++ +d++++++ +N+ a+++ g +  + +g+++ + + s ++++    +l++  + +e+   e +  +++ r++e+  + +p  +e+     ++ + +D+t+ +          + e+ R       a v HE+r  +  +   ++  +e  +   e+++ a++ + eq++r+   q        + ++d+l  +++E+ + + +++ vd+  l ++ +  +a  l+++ e +i+  +     v +d   L + l+NL++NA k+t++g +++vr e  e +++   ++l v+DtG GI +e+ +r+   F  
  MMETSP1174-20130828|1017_1  23 NAPIFGVDKNGNVNVWNQCASTISGYESCHVMGHHLVSEFISSDYRAsvegVLNSAVKgKETanFEFPLIARDGRRVEIllNATPRRDEHgncvgMVGIGQDITEARakqdaemkqrEAEAARAaqaSVSAHVYHEIRNVVGAVLALADRTTEAVDLAFEESDDAVKSLPEQVRRLtehQrvvcqhavNTLNDMLDVAKMENGTYTPRSDIVDLGDLCRQAAMlQAPRLKTGVELHIDCPAPGVCIVLSDPILLLQYLTNLLSNAAKFTNKG-HVSVRCEvnELTGEwiqVKLGVADTGSGIRPEDQHRVLQAFTT 337
                 55566666666666666666666666666666666554444433333011134444332222333333333333333330034444444466665555666666543111111110012222221112346677888888888888888888877888888888888888888887333222222111456899***********************99876526777888888888888899999***********************986.555555410444434448999***************9998854 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   5.9e-13     4e-10     292     431 ..     211     361 ..     132     370 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 5.9e-13
   TIGR01386 292 rmvedmLfLaradnaqlalereeldlaaelekvaelfevlaeergvslkve....geaevegdaqlfrRalsNLlsNAlrytpegst.ievrverrad...evevsventgkgipeeelsrlFdRFYRvdaarsn....seegtGLGLaIvr 431
                    +dmL  a+ +n+   +    +dl+  l ++a+++++   ++gv+l+++    g + v +d+ l+   l+NLlsNA+++t +g   ++ +v++  +   +v++ v +tg+gi +e  +r+   F  + a  ++    s+ +tG+GL +  
  MMETSP1174-20130828|1017_1 211 NTLNDMLDVAKMENGTYTPRSDIVDLGD-LCRQAAMLQAPRLKTGVELHIDcpapGVCIVLSDPILLLQYLTNLLSNAAKFTNKGHVsVRCEVNELTGewiQVKLGVADTGSGIRPEDQHRVLQAFTTGSAVPQEediaSTRSTGIGLRLAN 361
                 3469**********************86.55667777777777777777653333789************************998632566666665533358999********************99887655434557788999997654 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   1.2e-05    0.0084       9     185 ..      18     197 ..      12     222 .. 0.77
   2 !    7.7   0.0   0.00034      0.23     346     452 ..     234     340 ..     205     366 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.2e-05
   TIGR02938   9 tvdqapvaisitdlkanilyanaafseitGyakeeviGkn...esvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqkllieavvdaaPvalvlldeqgrvv...ldnleykklasdlkveepaesllkllreelae 185
                  +d a+  i   d+  n+   n+  s+i+Gy +  v+G+    e + s+ ++   v   l  ++  k+  + ++    +dg++    l  +P  +e G+ +  +G+ +d+te    +    +q+    a  + a v++ +  e   vv   l        a dl  ee+ ++ +k+l e+++ 
  MMETSP1174-20130828|1017_1  18 LIDTANAPIFGVDKNGNVNVWNQCASTISGYESCHVMGHHlvsEFISSDYRAS--VEGVLNSAVKGKETANFEFPLIARDGRRVEILLNATPRRDEHGNCVGMVGIGQDITEARAKQDAEMKQREAEAARAAQASVSAHVYHEIRNVVgavLALADRTTEAVDLAFEESDDA-VKSLPEQVRR 197
                 578899999999**************************854337888888875..4556666666666655555555679****99***************************99999999999988888888999999988888776222555555666778888776554.5666666654 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00034
   TIGR02938 346 vnlnqvlrdvitllterllaaGivvd.wqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrr.elsistaveddlirveiedsGPGiPadlrlkvfePffttka 452
                 v+l ++ r++  l ++rl + G+ ++   Pa+ +  vl  +  l   + +l+ na +  ++ +v+ r e++ +t  e   +++ + d+G Gi ++ + +v++ f t  a
  MMETSP1174-20130828|1017_1 234 VDLGDLCRQAAMLQAPRLKT-GVELHiDCPAPGVCIVLSDPILLLQYLTNLLSNAAKFTNKGHVSVRcEVNELT-GEWIQVKLGVADTGSGIRPEDQHRVLQAFTTGSA 340
                 78889999999999999765.544431479***************************99999988662444333.3334577889*******99999****99987655 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0032       2.2       4      56 ..     453     512 ..     451     528 .. 0.70
   2 !    8.4   0.0   0.00038      0.26      54     121 ..     568     636 ..     540     647 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0032
   TIGR02154   4 rilvvedeeairellaynlek..egy.....evveaedaeealalikeelPdlilldWml 56 
                 ++lvv+d+ ++r+++a+++++   +y     e  +a ++eea+ +++ ++  ++ +d  l
  MMETSP1174-20130828|1017_1 453 QVLVVDDQLTMRQMVAMMFQQfcVKYplvkvELQTALSGEEAIRVMRTQTFHIMTMDQQL 512
                 79***************9997332441111133455677777777777777777777655 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00038
   TIGR02154  54 WmlpgtsGielarrlrkeeetreiPiim.ltargeeedrvrgletGaddyvvkPfspkellarikavlr 121
                  +l g+  i  +r+  +++  +++Pii  lt  + e+dr + l +G++  + kP    ++++ i+  l 
  MMETSP1174-20130828|1017_1 568 GVLAGHDAIRQIREEFEKSGRKHVPIIFnLTGNVLENDRQKYLLSGSNGVLPKPTKLADMISMIEDSLS 636
                 5566666666666666777889****9769************************999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:00.63
# Mc/sec: 1384.84
//
Query:       MMETSP1174-20130828|1018_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-23   79.0   0.0    8.3e-23   78.8   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0097   12.6   0.0      0.016   11.8   0.0    1.3  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   4.1e-26   8.3e-23       2     135 ..      25     150 ..      24     175 .. 0.85

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 4.1e-26
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvksl 135
                 +e++i++vG +++GK+t+l++l+  + + t + p+++++++t  + +++  + ++++D++Gq++ ++++r+y+++++++++vvd + + ++v+ +  ++     +e +  ++++++++nK+Dl ++++  + ++
  MMETSP1174-20130828|1018_1  25 REMRILMVGLDAAGKTTILYKLKLGE-VVTTI-PTIGFNVET--VDYKN--ISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDR-DRVDAAR-DELHRMLNEDELRESVLLVFANKQDLPNAMSAAEMTD 150
                 689***********************.88888.*******99..8****..77*********************************99.8888888.6667777777778***************555444443 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     8e-06     0.016      97     120 ..      24      47 ..       8      53 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8e-06
   TIGR00959  97 kkpavillvGLqGsGKtttaaKla 120
                 k+ + il+vGL  +GKtt   Kl 
  MMETSP1174-20130828|1018_1  24 KREMRILMVGLDAAGKTTILYKLK 47 
                 67789**************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 586.28
//
Query:       MMETSP1174-20130828|1019_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1174-20130828|1021_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.36s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 1969.42
//
Query:       MMETSP1174-20130828|1024_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 902.52
//
Query:       MMETSP1174-20130828|1025_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.3   1.7      0.037   11.1   1.2    1.0  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2     9e-06     0.037      27      71 ..      13      59 ..       7      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9e-06
   TIGR00599 27 lRChvCkdffkaPvltsCsHtFCslCiRrcLse..epkCPlCraedq 71
                l C +C    ++ v  +CsH F   C+    s   +  CPlCr  ++
  MMETSP1174-20130828|1025_1 13 LICAICLGPPEKHVKLPCSHEFYRKCVDALRSRglKQLCPLCRGAEK 59
                77999999999999************976555422567*****8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|1028_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|1027_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-22   75.2   0.7    2.8e-21   73.6   0.0    1.8  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.4e-21   72.0   0.3    1.3e-20   71.2   0.0    1.4  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.7e-18   62.1   0.3    6.6e-18   61.6   0.2    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.1e-12   45.3   2.3    1.9e-07   28.0   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
      2e-11   40.7   1.2    2.3e-10   37.1   0.2    2.0  2  TIGR00631 uvrb: excinuclease ABC subunit B
    2.1e-11   41.4   0.4    1.6e-09   35.1   0.3    2.1  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    3.5e-10   36.6   0.0    0.00011   18.4   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    7.3e-08   29.0   5.3    2.4e-07   27.3   3.7    1.8  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    6.9e-07   25.8   0.2    1.4e-05   21.5   0.0    2.0  2  TIGR00580 mfd: transcription-repair coupling factor
    2.4e-05   21.3   0.7      0.005   13.7   0.1    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    2.5e-05   20.9   0.4     0.0022   14.5   0.1    2.5  2  TIGR00595 priA: primosomal protein N'
     0.0033   12.8   0.0       0.28    6.4   0.0    2.1  2  TIGR01054 rgy: reverse gyrase


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.21        73      10      60 ..      69     119 ..      58     150 .. 0.67
   2 !   73.6   0.0   8.3e-24   2.8e-21     221     341 ..     276     403 ..     217     422 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.21
   TIGR00614  10 esfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvisPL 60 
                 e+    q+ +i  v +g d++     G Gk   + + a+ +  l+l  + +
  MMETSP1174-20130828|1027_1  69 EKPSAIQQLAIVPVGKGLDVVAQAQSGTGKTATFAIGALQVIDLGLKECQV 119
                 344445666666666777888888889999888888888877777644443 PP

  == domain 2    score: 73.6 bits;  conditional E-value: 8.3e-24
   TIGR00614 221 v.......kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                         ++   +  iiYC++r+kve +++eL+k++ +    h+++e+s+r+ v  +f     +v++at     Gi+  +v  vi y+lp + e+Y   +GR+GR g k  ++ + +++Dv+ +r +
  MMETSP1174-20130828|1027_1 276 LetlvdlyEAVTITQAIIYCNTRRKVEWLTDELTKRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMNLVTQKDVSCMRDI 403
                 0444444344455667**********************************************************************************************************999876 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.96   3.3e+02       5      55 ..      60     112 ..      57     121 .. 0.81
   2 !   71.2   0.0   3.8e-23   1.3e-20     203     338 ..     267     402 ..     231     418 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.96
   TIGR01389   5 LkevF..GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLllkgl 55 
                 L+ vF  G+e+    q+  i  v +g dv+a    G Gk   + + aL + +l
  MMETSP1174-20130828|1027_1  60 LRGVFshGFEKPSAIQQLAIVPVGKGLDVVAQAQSGTGKTATFAIGALQVIDL 112
                 66665447778888899999999999999999999999999999999976655 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 3.8e-23
   TIGR01389 203 fsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkr 338
                   + ++e k + l++  +  + +  iiY+++R+kve l++ L+++ +++   h+ +++++R+    +F     +v++at     Gid  +v  vi +dlP n e+y    GR+GR G+k  a+ l +++D++ ++ 
  MMETSP1174-20130828|1027_1 267 VAIDREEWKLETLVDLYEAVTITQAIIYCNTRRKVEWLTDELTKRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMNLVTQKDVSCMRD 402
                 4455666667777777777777999*********************************************************************************************************998765 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.2   1.9e-20   6.6e-18      14     345 ..      71     381 ..      61     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 1.9e-20
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvg..nleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                 p a Q+ ++  + +g + + +a  G+GKT +  +++l  +       k  +vl ++P + L  +i+   +a  e +++++      G    ++  +  ++ +++++ Tp  +  l+ +++ +  + +lr+ ++DE  e+l+  RG l +     +++l+ +++v+  sAT+    le+ ++++ +        lvk +e     +++   +  ++  w+    l++l +++e+++  +++++++NtR + E l  +L++       +++  H+ ++ ++R+ v a++++g+ r++++T  L  G+D ++v lvi+   p +    + RiGRs+ 
  MMETSP1174-20130828|1027_1  71 PSAIQQLAIVPVGKGLDVVAQAQSGTGKTATFAIGALQVID---LGLKECQVLVLAPTRELVLQIHSVFQALSEYMDVSV--LACIGGRRVRDDIQALQQGAQVVIGTPGRVLDLVHERR-ALDLGSLRVFILDEADEMLS--RGFLDSVK-DMFSSLRDDVQVCLFSATLPleVLETTQRFMRD----PLRILVKRDELTLDGIKQFYVA-IDREEWK----LETLVDLYEAVTI-TQAIIYCNTRRKVEWLTDELTKRD----FTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGR 381
                 56677777788889999999*********999999998777...556789*********************999997665..5566888888888899999*********9876665555.55689*************98..77655543.56677789**********841033333333333....3468888877777777777666.9999997....5666666776654.5689***********999998754....56999**************************************************************84 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   1.2e-06    0.0004     262     365 ..      91     199 ..      86     203 .. 0.69
   2 !   28.0   0.0   5.5e-10   1.9e-07     475     534 ..     303     364 ..     275     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.2e-06
   TIGR00643 262 qGdVGsGKTvVavlallaviesG...yqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGTha....llqekv..efkeLalviiDE 365
                 q + G+GKT   ++ +l+vi+ G    qv+++aPT  L  Q    ++ l e ++++v    g  +    ++  +++++G+ ++v+GT      l++e+   ++ +L++ i DE
  MMETSP1174-20130828|1027_1  91 QAQSGTGKTATFAIGALQVIDLGlkeCQVLVLAPTRELVLQIHSVFQALSEYMDVSVLACIGGRR---VRDDIQALQQGA-QVVIGTPGrvldLVHERRalDLGSLRVFILDE 199
                 6677*****************99444599************988887777765555544444433...344456788885.89****75222244443211455666666666 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 5.5e-10
   TIGR00643 475 elkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  l++ +   +++v  +h+ ++  e++ v++eFr+++  +L+aT ++  G+dv ++++++ +d
  MMETSP1174-20130828|1027_1 303 WLTDELtkRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYD 364
                 444444335789999****************************************9998666 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.024       8.1      13      76 ..      69     138 ..      60     145 .. 0.75
   2 !   37.1   0.2   6.8e-13   2.3e-10     445     543 ..     290     383 ..     265     406 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.024
   TIGR00631  13 DqpkaieklvesleagekeqvLlGvtGsGktftia....nviak..vqkPtlvlahnktLaaqLyeelke 76 
                 ++p+ai++l+     +  ++v     G+Gkt+t a    +vi+    +   lvla+ + L  q+ + +++
  MMETSP1174-20130828|1027_1  69 EKPSAIQQLAIVPVGKGLDVVAQAQSGTGKTATFAigalQVIDLglKECQVLVLAPTRELVLQIHSVFQA 138
                 6799999999887777778889999*******99844445666411234568888888888888877766 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 6.8e-13
   TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnv 543
                 ++++   t++  e ltd l++++  v  +hs+++  er+ ++ ++r g+  vl+  ++L  G+D+ +vslv   D     +  +++  i  iGr+ r  
  MMETSP1174-20130828|1027_1 290 QAIIYCNTRRKVEWLTDELTKRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFG 383
                 5678899****************************************************************8777.....4556677778888877754 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.01       3.4       2      51 ..      88     138 ..      87     165 .. 0.82
   2 !   35.1   0.3   4.8e-12   1.6e-09     127     335 ..     194     397 ..     167     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.01
   TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifal.Ptratanamyerlke 51 
                 +v +A  G GKt + ++ al+ i+   ++  +++l Ptr ++  ++  +++
  MMETSP1174-20130828|1027_1  88 VVAQAQSGTGKTATFAIGALQVIDLGLKECQVLVLaPTRELVLQIHSVFQA 138
                 788999******************997775555544999988887776655 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 4.8e-12
   TIGR01587 127 vliiDEvhayeey.tkalllallevlkdvdvkillmsAtlp.kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapid..sLiQRlGRlaRygrkirenrevyvltel 335
                 v i+DE++ + +   +  +  ++  l+d dv++ l sAtlp + l++  + +  +  + +++++e     ++++ +  ++ + ++++l +l ea+    +++i +Nt ++   l ++l     ++ +  +Hs +  ++r+     +++e+++  ++v++aT +   ++D+  v ++i    p +    i R+GR  R+grk    +++   +++
  MMETSP1174-20130828|1027_1 194 VFILDEADEMLSRgFLDSVKDMFSSLRD-DVQVCLFSATLPlEVLETTQRFMRDP-LRILVKRDELTLDGIKQFYVAIDREEWKLETLVDLYEAV-TITQAIIYCNTRRKVEWLTDELT--KRDFTVSCMHSDMEMSERQL----VMAEFRSGSSRVLIATDILARGIDVQqVSLVINYDLPTNreNYIHRIGRSGRFGRKGV-AMNLVTQKDV 397
                 6789999855544155556667777665.8999********98888877777766.677777788777778888888888888888888776665.568999*****999999999888..44456********9999865....5************************824555555566652269***********9976.4444444444 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-06   0.00055      23     168 ..      57     202 ..      46     236 .. 0.86
   2 !   18.4   0.0   3.1e-07   0.00011     289     384 ..     295     394 ..     285     401 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.6e-06
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee.rdvra.atydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                 +++ + + ++G e+p + q  a     +G +vv  +   +Gk+ ++ + +l+ +    ++ ++l laPt+ l      + ++l+e  dv + a+  G   ++  + +++ a++v+  P  +   +   h+r a  l++lr  ++de+ +
  MMETSP1174-20130828|1027_1  57 ENLLRGVFSHGFEKPSAIQQLAIVPVGKGLDVVAQAQSGTGKTATFAIGALQVIDLGlKECQVLVLAPTRELVLQIHSVFQALSEyMDVSVlACIGGRRVRDDIQALQQGAQVVIGTPGRV---LDLVHERRALDLGSLRVFILDEADE 202
                 5677778889999999999999999999*************************988757889***********999999999998766665267788899999999************865...44569*****************976 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.1e-07
   TIGR03817 289 leakerlaevdaelaer...vaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv.lvar 384
                  +++++++  + el++r   v++  +     +r+ + +++++G+ + + at+ l  G+d+  +  v+    P  +  +  ++Gr+Gr g++ +++ lv++
  MMETSP1174-20130828|1027_1 295 CNTRRKVEWLTDELTKRdftVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMnLVTQ 394
                 5666677777777776655577777777888999999*****************************************************9988635544 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   3.7   6.9e-10   2.4e-07      19     289 ..      87     363 ..      83     396 .. 0.78
   2 ?   -2.1   0.0      0.52   1.8e+02     318     342 ..     374     399 ..     368     415 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 6.9e-10
   TIGR01970  19 qvvLeappGaGkstalP...LalLdapwligrkiilLePrr...laaravaerlaselgeevGetvG.yrvrlenkv.saktrlevvteGiltrmlqdDPeLe..gvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerl...selldeapvveseGrsfP...veirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDs 289
                 +vv +a +G Gk++++    L+++d + l + ++++L P r   l   +v + l++ ++ +v   +G  rvr + +   + +++ + t G +  ++ +  +L+   + + i+De  e   ++   L   +d  s+lr+D+++ + satL  e l   ++++ +  ++  +        +   y +++++e   + +++  e +  + ++  +++     + rr  e+L+++l + + ++  ++ ++e+ +++ +++   +G  +v +at+i    + ++ v +vi+ 
  MMETSP1174-20130828|1027_1  87 DVVAQAQSGTGKTATFAigaLQVIDLG-LKECQVLVLAPTRelvLQIHSVFQALSEYMDVSVLACIGgRRVRDDIQAlQQGAQVVIGTPGRVLDLVHERRALDlgSLRVFILDEADEMLSRG--FLDSVKDMFSSLRDDVQVCLFSATLPLEVLettQRFMRDPLRILVKRDELTldgIKQFYVAIDREEWKLETLVDLYEAV--TITQA-IIY----CNTRRKVEWLTDELTKRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINY 363
                 58999********99963337888888.88999******98766678999************9998626899997651566899999***9999998877765337999*****99965444..577899*******************987763337899988776666555550015556666666555444444444333..33344.445....466788899*********************************************************965 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.52
   TIGR01970 318 qraGraGrl.epGvclrLwseeqaer 342
                  r Gr+Gr    Gv++ L ++++ + 
  MMETSP1174-20130828|1027_1 374 HRIGRSGRFgRKGVAMNLVTQKDVSC 399
                 5889999983579****999988643 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.025       8.4     480     580 ..      95     200 ..      84     234 .. 0.60
   2 !   21.5   0.0     4e-08   1.4e-05     686     736 ..     314     364 ..     300     400 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.025
   TIGR00580 480 GfGKTEvamrAafkavldg...kQvavlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkakekkeilkelaeGkidiliGTh.kllq..kdvkfkdlg...LliiDEE 580
                 G GKT      a+++++ g    Qv vl+PT  L+ Q ++ +++ ++++ + + +l  +   +  ++ +++l++G  +++iGT  ++l+  ++ +  dlg     i+DE 
  MMETSP1174-20130828|1027_1  95 GTGKTATFAIGALQVIDLGlkeCQVLVLAPTRELVLQIHSVFQA-LSEY-MDVSVLACIGG-RRVRDDIQALQQGA-QVVIGTPgRVLDlvHERRALDLGslrVFILDEA 200
                 77888766666666666555558***********9998877765.5555.56666766555.45566667888886.788888435654112233333331114566664 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 4e-08
   TIGR00580 686 riaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiier 736
                  +  +H+ me +e + vm eF ++++ vL++T i+  Gid+ ++  +i  +
  MMETSP1174-20130828|1027_1 314 TVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYD 364
                 57889*************************************998766444 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0029      0.99      31      71 ..      92     133 ..      72     170 .. 0.79
   2 !   13.7   0.1   1.4e-05     0.005     281     380 ..     291     379 ..     262     395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0029
   TIGR04095  31 matGtGktlt.aLalvsklaekikslvvvvvvPykhLveqWa 71 
                    GtGkt t a+ + + ++   k+  v+v++P ++Lv q  
  MMETSP1174-20130828|1027_1  92 AQSGTGKTATfAIGALQVIDLGLKECQVLVLAPTRELVLQIH 133
                 457******944555555577889999***********9965 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.4e-05
   TIGR04095 281 tlvYcgdgktedekeeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRv 380
                 +++Yc           ++r+++ +++ l +  +++v+   +  +++eR+ ++ +f sg+  +l+a   L  G+Dv ++   +     +n  ++i R GR 
  MMETSP1174-20130828|1027_1 291 AIIYCN----------TRRKVEWLTDELTK-RDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRS 379
                 444444..........56788888877764.4678888899999**********************************9999999999******999985 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0034       1.2       6     173 ..      94     266 ..      90     328 .. 0.57
   2 !   14.5   0.1   6.4e-06    0.0022     288     340 ..     313     361 ..     289     414 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0034
   TIGR00595   6 tGSGKtEvy....lkviekvlakgksvlvLvPEiaLtaqllkrlkerfgsevavlhsklsasekkqawrkvklgeakvviGarSalf........lPlknLgliivDEEHdssyKqeelpryhardvavvrakkenipvvlgSAtPslesyenvkqkkyrllvlkrrvsgaelpevklvd 173
                 +G GKt  +    l+vi+  l k+ +vlvL P   L  q+ + +++ + + + v   +   + + +   ++ ++ a+vviG+   ++        l l  L + i+DE  +     + +     +d+    + + +++v l SAt  le +e+ ++   + l++  + ++ +l+ +k   
  MMETSP1174-20130828|1027_1  94 SGTGKTATFaigaLQVIDLGL-KECQVLVLAPTRELVLQIHSVFQA-LSEYMDVSVLACIGGRRVRDDIQALQQGAQVVIGTPGRVLdlvherraLDLGSLRVFILDEADEML---SRGFLDSVKDMF--SSLRDDVQVCLFSATLPLEVLETTQRFMRDPLRILVKRDELTLDGIKQFY 266
                 689999998544445555444.5679******99999999988865.667777777777778888888888888899999997655422222222345556677777766543...233333445543..33445566677777777766666666666655555555555555544444 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 6.4e-06
   TIGR00595 288 ariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvl 340
                   ++ + sD+  +++  + ++++f++g  ++li t ++a+G+d ++v+lv  +
  MMETSP1174-20130828|1027_1 313 FTVSCMHSDMEMSER--QLVMAEFRSGSSRVLIATDILARGIDVQQVSLV--I 361
                 456677777777666..7799**************************997..4 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0033       1.1      93     154 ..      83     147 ..      62     207 .. 0.70
   2 !    6.4   0.0   0.00082      0.28     138     188 ..     296     347 ..     283     366 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0033
   TIGR01054  93 lknksFaivaPtGvGktt.f..glvmslflakkgkrvyiilPttlLvkqvaeklsslaekeglni 154
                  k+    + a  G Gkt+ f  g++  + l  k  +v+++ Pt+ Lv q+ +  + l+e  ++++
  MMETSP1174-20130828|1027_1  83 GKGLDVVAQAQSGTGKTAtFaiGALQVIDLGLKECQVLVLAPTRELVLQIHSVFQALSEYMDVSV 147
                 45555555677899*995231145555667778899999*************9999999888765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00082
   TIGR01054 138 qvaeklsslaek.eglnirvvayhsklstkekkevkeriengdfdilittsa 188
                 ++ +k++ l+++ ++   +v  +hs ++ +e++ v+ ++++g  ++li+t  
  MMETSP1174-20130828|1027_1 296 NTRRKVEWLTDElTKRDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDI 347
                 66777777776524455668899**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.64
# Mc/sec: 872.37
//
Query:       MMETSP1174-20130828|1030_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.6   0.0       0.55    7.5   0.0    2.4  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0008       3.3      42      70 ..      40      68 ..      15      81 .. 0.81
   2 !    7.5   0.0   0.00014      0.55     105     154 ..     135     184 ..     119     206 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0008
   TIGR03162 42 vkfdavvsSplsRcrelAellaeklklpi 70
                  +d+++ Spl+R+ ++A +  e++   i
  MMETSP1174-20130828|1030_1 40 WGADEILVSPLTRTIQTALISLEDHPAMI 68
                56799*************99877766655 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00014
   TIGR03162 105 dlaharvpgGEsvadfsqRveefleelakeekenvlivtHgGvirallah 154
                 d+ +++ +     +d+  R  e+l++++ +++ n+++v+H+  +ral  +
  MMETSP1174-20130828|1030_1 135 DMWWTSSTAADDTNDINMRLNELLNTIKFSRSSNIVLVSHSNLFRALFDR 184
                 55556666777889999****************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1283.48
//
Query:       MMETSP1174-20130828|1033_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.1   2.6       0.18    9.7   0.1    2.4  2  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
        0.3    9.5   4.6      0.063   11.6   0.2    2.0  3  TIGR01841 phasin: phasin family protein


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   8.9e-05      0.18      50      88 ..       1      39 [.       1      66 [. 0.90
   2 ?    3.4   0.2    0.0082        17      18      88 ..     106     181 ..      92     185 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.9e-05
   TIGR01837 50 vdalreevktkleqvrdkvqrnldklekafdervesvln 88
                +d++re ++++ eq rd+  +++ +l++ +  ++e++l+
  MMETSP1174-20130828|1033_1  1 MDSIRERITSEAEQCRDQLPQKFMELDEFLRPKMEQALS 39
                79**********************************997 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0082
   TIGR01837  18 arvqeegsklfdeL....VkeGekaekrakkrvdksvdalr.eevktkleqvrdkvqrnldklekafdervesvln 88 
                   +++e s+l+ eL     ++G++a k +kk++  + ++ +  e +    ++   v+++ +++ +a+   + ++++
  MMETSP1174-20130828|1033_1 106 VESKKELSDLLKELptyyKERGDAAVKISKKSSSSKTETKKnTEKDGSAAEAESSVVVEQKEVSDAVHPDLVKAVE 181
                 5566777777777733333689999999999999999988854445556666677777777777777666655555 PP

>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   3.1e-05     0.063      30      79 ..      14      62 ..       2      70 .. 0.84
   2 ?   -2.8   0.0      0.97     2e+03      64      76 ..     104     116 ..     100     119 .. 0.53
   3 ?   -1.8   0.1      0.47   9.7e+02      46      62 ..     153     169 ..     129     182 .. 0.52

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.1e-05
   TIGR01841 30 lasagdpqellalqtefakpaaeklleysrelyEiaaktqaealkllrrr 79
                 +  + pq +++l  ef++p  e++l+++ +l+   ++++ e+++l++r 
  MMETSP1174-20130828|1033_1 14 QCRDQLPQKFMELD-EFLRPKMEQALSANMNLSVSESSSNDEMAQLFNRT 62
                5666779*******.*****************************999875 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.97
   TIGR01841  64 iaaktqaealkll 76 
                 i++ +++e+ +ll
  MMETSP1174-20130828|1033_1 104 IVVESKKELSDLL 116
                 4555555555554 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.47
   TIGR01841  46 fakpaaeklleysrely 62 
                  a++a + ++ + +e++
  MMETSP1174-20130828|1033_1 153 SAAEAESSVVVEQKEVS 169
                 44444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 632.45
//
Query:       MMETSP1174-20130828|1031_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 679.60
//
Query:       MMETSP1174-20130828|1035_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1031.60
//
Query:       MMETSP1174-20130828|1034_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.27s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 343.87
//
Query:       MMETSP1174-20130828|1036_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 512.12
//
Query:       MMETSP1174-20130828|1038_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1174-20130828|1039_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.54
# Mc/sec: 207.76
//
Query:       MMETSP1174-20130828|1037_1  [L=1190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.25s 00:00:01.08 Elapsed: 00:00:00.85
# Mc/sec: 1847.85
//
Query:       MMETSP1174-20130828|1041_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1140.52
//
Query:       MMETSP1174-20130828|1042_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.3   0.0      0.032   11.0   0.0    1.1  1  TIGR01743 purR_Bsub: pur operon repressor PurR


Domain annotation for each model (and alignments):
>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.9e-06     0.032      20      90 ..      66     136 ..      49     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.9e-06
   TIGR01743  20 klislekfsdkyesakssisediviikevlekfeiGkletvaGaaGGvkyiPkvsekeakefveelcekls 90 
                 +  sl kfsd+++ ak+ ++e    +  + ek+++ +l ++      ++   + + +ea  f +e ++k++
  MMETSP1174-20130828|1042_1  66 ESESLGKFSDLLNKAKADAAEQYRDLDMMKEKQKVAELAAIRERDERIRIAAEKAAEEAATFAREAAKKAA 136
                 556899****************99999999*************9999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 520.82
//
Query:       MMETSP1174-20130828|1043_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|1047_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 294.15
//
Query:       MMETSP1174-20130828|1045_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   24.2   0.5    0.00012   19.3   0.0    2.1  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      1e-05   22.3   0.0      1e-05   22.3   0.0    2.2  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0013   15.6   0.1      0.055   10.3   0.0    2.3  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.5    0.0084        11     462     517 ..     242     298 ..     144     334 .. 0.58
   2 !   19.3   0.0   8.4e-08   0.00012     174     238 ..     354     415 ..     345     440 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0084
   TIGR01628 462 lnnr.nrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqatk 517
                  +++ n++  ++++ ++ +a+++ ++++     qa ++ +m++ +q  + p+ q+++
  MMETSP1174-20130828|1045_1 242 KRQGaNSDASKSNSSAAAPATTQPSSQPAPSSAQASKQGKMKTWAQLVTTPTAQQAA 298
                 222222222222223333333333333333333322223333333333333222222 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 8.4e-08
   TIGR01628 174 kekkftNlYvKn..lddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAvee 238
                 ++k  t +Y+K   ++++ ++++++ +F ++Gei  +  +      +rgfaf+ y +a + +kA+++
  MMETSP1174-20130828|1045_1 354 PDKPATAIYIKGpgVKPETSKEQIKSVFEEYGEIKTITLHA-----ERGFAFIDYTSASSYTKAIQA 415
                 56777999**954499******************9887653.....358*********999999874 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.2  10.6         3   4.1e+03     313     422 ..     174     294 ..     140     345 .. 0.59
   2 !   22.3   0.0   7.6e-09     1e-05     208     261 ..     368     415 ..     355     427 .. 0.89

  Alignments for each domain:
  == domain 1    score: -9.2 bits;  conditional E-value: 3
   TIGR01645 313 avag.......aavlglraqspatassslvtdieakavvssakkeae.....evpalpqaapavlkdeviteekP...vaPsllaiPslvaplglvaPteinpsllaspqlkieekieevtlgal 422
                 a  g          +++  ++ +t+ ++ +t++  +  vss+   ae     +vp+ p++  a  k+   ++ +     + s  a P++ +p    aP     s  as+q k++  ++ vt  + 
  MMETSP1174-20130828|1045_1 174 AWKGaanvypsRDEPAVPVETAVTTPNADPTSLPVQESVSSPVVDAEvkeglPVPPTPDSSAAKGKPSKRQGANSdasKSNSSAAAPATTQPSSQPAP----SSAQASKQGKMKTWAQLVTTPTA 294
                 23331112222223333334444444445555655666666666666555558888888888888888666655543355567788888888877777....56667777777776666654333 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 7.6e-09
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaias 261
                 v p+ s+e +ksvfe +Gei+        tl+  +Gf f+++  + s  +ai +
  MMETSP1174-20130828|1045_1 368 VKPETSKEQIKSVFEEYGEIK------TITLHAERGFAFIDYTSASSYTKAIQA 415
                 8999****************9......678899******************976 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     4e-05     0.055     227     278 ..     368     413 ..     342     415 .. 0.78
   2 !    9.2   0.0   8.3e-05      0.11     161     196 ..     396     431 ..     393     439 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4e-05
   TIGR01622 227 lhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAl 278
                 ++ + + ++++ +Fe +Gei+++ l+ +      +G+ Fi ++ a+   +A+
  MMETSP1174-20130828|1045_1 368 VKPETSKEQIKSVFEEYGEIKTITLHAE------RGFAFIDYTSASSYTKAI 413
                 55677899*****************974......8********999888876 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 8.3e-05
   TIGR01622 161 kGvaYvEFydvesvqlAlaltGqkllgvPvivqase 196
                 +G a++++   +s ++A+++   +++g+Pv v++ +
  MMETSP1174-20130828|1045_1 396 RGFAFIDYTSASSYTKAIQAGEVLIKGQPVHVEPRQ 431
                 8*******************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 1413.75
//
Query:       MMETSP1174-20130828|1048_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|1049_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.0   8.4      0.018   11.9   5.8    1.0  1  TIGR00414 serS: serine--tRNA ligase
       0.11    9.2   3.4       0.15    8.7   2.4    1.1  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
       0.18    9.5   6.0       0.27    9.0   4.2    1.3  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
       0.43    6.7   9.8       0.49    6.5   6.8    1.1  1  TIGR02350 prok_dnaK: chaperone protein DnaK


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.8   1.7e-05     0.018      26     122 ..      33     130 ..       9     148 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
   TIGR00414  26 eidleklselddklkkllskieelqkkrnelskeigk..kkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeed 122
                 + +  +++  +++  +++  ++e q+ r ++++  ++  ++ +++d  e +++e+k+l++ +++ +a l+e e++ +  + ++  +v+e + vgk++++
  MMETSP1174-20130828|1049_1  33 MKHRSRVEREEKEDAEKKIIVKEQQADRDRIEELTQRlkDEVDEAD-KEAIEEEIKDLQTMVSQRDARLEEFEQNKKWNVDNMCHVVEERTIVGKTKDN 130
                 4455566666667777777777777777776666666422233333.577*********************99999999999999*********98654 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.4   0.00015      0.15     257     310 ..      40      93 ..      19      96 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00015
   TIGR03182 257 kkrdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLl 310
                 ++++  ++ kk +++++ ++ ++++e+ +  k+ev+ea + a e++  d+++++
  MMETSP1174-20130828|1049_1  40 EREEKEDAEKKIIVKEQQADRDRIEELTQRLKDEVDEADKEAIEEEIKDLQTMV 93 
                 3333334567889999**************************999988888776 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.2   0.00026      0.27      47     112 ..      36     102 ..       9     113 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00026
   TIGR03927  47 etelekelftpeeqkkikkkkkkekkeqeelkdqLfs.enatesntvkktkkqLFsseyeqtsssse 112
                 ++  e+e + + e+k i k+++++ +++eel + L+   ++ +++++++++k L +  ++  ++ +e
  MMETSP1174-20130828|1049_1  36 RSRVEREEKEDAEKKIIVKEQQADRDRIEELTQRLKDeVDEADKEAIEEEIKDLQTMVSQRDARLEE 102
                 5666777788999************************999999*********998877766666655 PP

>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.8   0.00048      0.49     499     575 ..      26     101 ..       6     123 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00048
   TIGR02350 499 seeeiermvkeaeanaeedkkkkeevear.neadsliyqaektlkeagdkleeeekekiekaveelkealkeedveek 575
                 +++   rm + ++ ++ee +  ++++ ++  +ad    ++e+  +  +d+++e++ke ie+++++l++++++ d++ +
  MMETSP1174-20130828|1049_1  26 DKSSWFRMKHRSRVEREEKEDAEKKIIVKeQQAD--RDRIEELTQRLKDEVDEADKEAIEEEIKDLQTMVSQRDARLE 101
                 4444445555544444333333333333303344..456677777778889999999999999999999988886432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       596  (0.145295); expected 82.0 (0.02)
Passed bias filter:                      248  (0.0604583); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 599.95
//
Query:       MMETSP1174-20130828|1050_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 807.65
//
Query:       MMETSP1174-20130828|1052_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 187.56
//
Query:       MMETSP1174-20130828|1053_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 561.90
//
Query:       MMETSP1174-20130828|1055_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|1057_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.24s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 493.22
//
Query:       MMETSP1174-20130828|1056_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.62
# Mc/sec: 943.08
//
Query:       MMETSP1174-20130828|1051_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-198  658.4   0.0   4.2e-198  658.1   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    5.2e-52  175.3   0.2    3.6e-17   60.4   0.2    4.3  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
      5e-43  145.8   0.0    2.5e-14   51.4   0.0    3.2  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      5e-37  126.1   1.1    2.3e-15   54.9   0.0    3.9  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
      2e-25   87.1   0.9    8.5e-09   32.2   0.1    4.2  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.1e-24   82.8  11.4    4.2e-06   23.6   0.0    4.8  4  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.4e-20   71.4   1.3    7.3e-13   45.9   0.0    2.9  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    6.1e-09   33.2  11.8     0.0017   15.3   0.0    5.0  5  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  658.1   0.0  8.2e-201  4.2e-198       1     595 []      18     627 ..      18     627 .. 0.82

  Alignments for each domain:
  == domain 1    score: 658.1 bits;  conditional E-value: 8.2e-201
   TIGR01628   1 aSlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmwsqRdPslRksGvgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkk..........de...knrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfk......inqmmlstqnps..kpeapnalaqlaqqrlqaqgrrnlnnrnrnv.lgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnn..lpqkqatksnnkestltaaalasaspseqkqvLGerLfplveklepelaaKitGmlLEmdnsEllelleseeqLkkkvdEAleVLk 595
                 aSlyvGdL +dv E  L++lF++vg+v+s+RvCrD++ +rSLgYaYvNf+n+adAerAldt+ny+ +k++  R+mwsqRdPslRksGvgN+fvKnL +s++ k Lfd Fs fGn+lsckva   + kSkgYg+vh+e+ee+AkeA++k+  + + ++ev v  f+++++r   + +++tN+YvKn++++ +e +l +lF ++Ge++Sa++++          d+   +++++gfafv+++++ +Ak Ave+lng k+++++++k lyVgraqkr+eRe+el++kf e ++ +++ + gvNlYvkNldd+++d++L+  F++fG+itSa++m ++ + SkgFGFVcfs++eeAn+A +e++ k+l gkP++valAqr + R+++L q ++ a+  +     + p+ g  ++ g     + ++++  +     ++ p   +      + +++ ++++ +  +  +pn    ++qq+   +grr+ ++  ++  +gn   +q++  +++n++++k + qa+++   q+ +++++   p++ a++    + +lt +ala+a ps+qk+++GerL+pl+++ epela+KitGmlLEmdnsEll+lles+++L++k++EAl+VLk
  MMETSP1174-20130828|1051_1  18 ASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNFHNQADAERALDTMNYTMIKSRSCRIMWSQRDPSLRKSGVGNLFVKNLHASVTHKDLFDAFSLFGNVLSCKVALGPDAKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVMAFQRREKR--PEVTEWTNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMMytekdveakpDRnlvAGKSKGFAFVAFKEHVAAKAAVETLNGMKLDESEEPKELYVGRAQKRTERERELRKKFAEIQNSKIQSYLGVNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQDGSSKGFGFVCFSQPEEANAATNEMNSKLLLGKPIFVALAQRGDVRRTMLAQSHSAARNPMNMARGPGPMAGGPHMYG-----TVPMMYPGNMPPNGRGGPYPMPmimpgpRGMPRGVPMQANayARGQPNYQGMVNQQHGAGGGRRGRRQPGHAGgRGN--GRQNQPQTQRNNQQYKFNEQARNQRPGQPGQPGTAapQPAPPAAQAAPAQGPLTLSALANADPSQQKNMIGERLYPLIAEPEPELAGKITGMLLEMDNSELLHLLESPDALQSKINEALDVLK 627
                 8*************************************************************************************************************************************************************************..69************************************983333222222112224789*************************************************************************************************************************************************************998888876666666666665333.....33333333333333333322221111222233333333331122224422222222222223333333322221333..3333334444445555555544444445555555533566666666689999*********************************************************************97 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     1e-13   5.3e-11     208     294 ..       6      92 ..       2     103 .. 0.87
   2 !   41.6   0.0   3.4e-14   1.7e-11     220     295 ..     106     180 ..      96     191 .. 0.92
   3 !   31.2   0.0   4.9e-11   2.5e-08     213     318 ..     187     306 ..     177     310 .. 0.76
   4 !   60.4   0.2   6.9e-20   3.6e-17     194     308 ..     289     403 ..     286     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1e-13
   TIGR01622 208 elsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                 + sg++ +  +   LYvG+l  +++E  L ++F+  G++ ++++ +D    rs Gy +++F++   a +Al ++N   +  R  ++ 
  MMETSP1174-20130828|1051_1   6 QNSGQQNTPYSSASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNFHNQADAERALDTMNYTMIKSRSCRIM 92 
                 44444444577889*************************************************************988888887775 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 3.4e-14
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                   L+v nlh ++t ++L + F  FG++++ ++ + p++ +skGyG++ ++  e akeA+ k+  + +   e+ v  
  MMETSP1174-20130828|1051_1 106 GNLFVKNLHASVTHKDLFDAFSLFGNVLSCKVALGPDA-KSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVMA 180
                 579***********************************.************************9999999988865 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 4.9e-11
   TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqk....Dpe........tGrskGyGFiqFsdaeeakeAleklNGlelAG....ReikvglasDvteesdaslaskfedsfdes 318
                  p+    + +Yv n+  +  E  L ++Fe  Ge+ + ++++    D e        +G+skG+ F+ F++   ak+A e+lNG+ l      +e+ vg a+  te++   l +kf++ +++s
  MMETSP1174-20130828|1051_1 187 RPEVTEWTNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMMytekDVEakpdrnlvAGKSKGFAFVAFKEHVAAKAAVETLNGMKLDEseepKELYVGRAQKRTERERE-LRKKFAE-IQNS 306
                 5666667889************************99888763333322233333557***************************9964223378999999998888776.7888877.6665 PP

  == domain 4    score: 60.4 bits;  conditional E-value: 6.9e-20
   TIGR01622 194 aseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas..Dvteesdasla 308
                  +e E+ + +k a+ ++ +i+ s     LYv nl  ++t+++L+  F+ FG i + +++k++++  skG+GF+ Fs+ eea +A +++N   l G++i v+la+  Dv  +  a++ 
  MMETSP1174-20130828|1051_1 289 RTERERELRKKFAEIQNSKIQ-SYLGVNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQDG-SSKGFGFVCFSQPEEANAATNEMNSKLLLGKPIFVALAQrgDVRRTMLAQSH 403
                 578888888888888887777.88889*********************************9887.*************************99*********9983345555545444 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   4.9e-17   2.5e-14      11     121 ..      25     137 ..      16     140 .. 0.87
   2 !   43.9   0.0   9.6e-15   4.9e-12      42     163 ..     143     279 ..     134     310 .. 0.82
   3 !   47.2   0.0   9.4e-16   4.8e-13      87     168 ..     311     389 ..     292     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 4.9e-17
   TIGR01661  11 lPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsya..rPssdsikganlyvsGlPktmtqkeleslfspfGkiitsri 121
                 l   +++  +  lf ++G + s+++ rd +  +slGy +vn+ ++ dae+a++++n   +++++ ++ ++   Ps  +    nl+v  l  ++t k+l   fs fG++++ ++
  MMETSP1174-20130828|1051_1  25 LAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNFHNQADAERALDTMNYTMIKSRSCRIMWSqrDPSLRKSGVGNLFVKNLHASVTHKDLFDAFSLFGNVLSCKV 137
                 555666777778*********************************************9999998877554116999999999*************************998765 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 9.6e-15
   TIGR01661  42 GqslGyGfvnyvreedaekavnslnGlrlqnktikv.syarPss..dsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtd............lskGvGfirfdkreeadraikalnGttPsgatepi 163
                  +s GyG+v y  ee a++a++ +  + + n+ + v ++ r  +  +    +n+yv  +P       l +lf+++G++i+++i++   +d             skG  f+ f ++  a+ a+ +lnG +  ++ ep 
  MMETSP1174-20130828|1051_1 143 AKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVmAFQRREKrpEVTEWTNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMMYTEKDveakpdrnlvagKSKGFAFVAFKEHVAAKAAVETLNGMKLDESEEPK 279
                 5799******************************994466654322455679*******************************98776666677888888889*************************999998874 PP

  == domain 3    score: 47.2 bits;  conditional E-value: 9.4e-16
   TIGR01661  87 ikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfa 168
                   g nlyv  l  +mt k+l + f +fG i ++ri++++  + skG Gf+ f + eea+ a  ++n +   g  +pi v +a
  MMETSP1174-20130828|1051_1 311 YLGVNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQ-DGSSKGFGFVCFSQPEEANAATNEMNSKLLLG--KPIFVALA 389
                 4589**************************999999765.799***********************876433..45555555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   4.4e-18   2.3e-15     100     221 ..      10     133 ..       2     142 .. 0.87
   2 !   39.8   0.0   1.7e-13     9e-11     107     259 ..     105     271 ..     101     283 .. 0.84
   3 !   42.8   0.2   2.1e-14   1.1e-11     141     329 ..     239     464 ..     235     480 .. 0.68

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 4.4e-18
   TIGR01659 100 dndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslng..itvrnkrlkvsyarpggesikdtnlyvtnlprtitddqldtifgkygsiv 221
                 +++t  s++ l v  l  d+++  l+ lf t+gp+ + r+ rd     s gya+v+f  +ad+ ra++++n   i  r  r+  s   p   +    nl+v nl  ++t ++l   f  +g+++
  MMETSP1174-20130828|1051_1  10 QQNTPYSSASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNFHNQADAERALDTMNYtmIKSRSCRIMWSQRDPSLRKSGVGNLFVKNLHASVTHKDLFDAFSLFGNVL 133
                 4566778899************************************************************972255566677777778888888889****************99999999886 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.7e-13
   TIGR01659 107 gtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkv.syarpg..gesikdtnlyvtnlprtitddqldtifgkygsivqknil............rdkltgkprgvafvrfnkreeaqeaisalnnvi 259
                   nl v  l   +t ++l+  f   g + +c++        s gy++v + +e  ++ a++++  i++ n+ + v ++ r     e    tn+yv n+p    + +l  +f  +g+++   i+            r+  +gk +g afv f     a+ a+ +ln + 
  MMETSP1174-20130828|1051_1 105 VGNLFVKNLHASVTHKDLFDAFSLFGNVLSCKVALGPD-AKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVmAFQRREkrPEVTEWTNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMmytekdveakpdRNLVAGKSKGFAFVAFKEHVAAKAAVETLNGMK 271
                 469*****************************987654.5699******************************98468775422578889*************************9998888645444433443355579************************9765 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 2.1e-14
   TIGR01659 141 rdyktgysfgyafvdfaseadsqraikslngi...................tvrnkrlkvsyarpggesikd...tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipegg......sqpltvr...laeehgkakaahymsk.lglikyg..eygtgnggvaggsa....anlpqppafmgannmvhrgrqk 329
                 r+  +g s g+afv f   + ++ a+++lng+                   t r++ l+  +a     +i+     nlyv nl  ++td++l++ f k+g+i    i++++  g  +g  fv f + eea+ a   +n  +  g       +q   vr   la+ h  a+  + m++  g + +g   ygt  +  +g+ +    +++ ++p+ m   + + rg   
  MMETSP1174-20130828|1051_1 239 RNLVAGKSKGFAFVAFKEHVAAKAAVETLNGMkldeseepkelyvgraqkrTERERELRKKFAEIQNSKIQSylgVNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQ-DGSSKGFGFVCFSQPEEANAATNEMNSKLLLGKpifvalAQRGDVRrtmLAQSHSAARNPMNMARgPGPMAGGphMYGTVPMMYPGNMPpngrGGPYPMPMIMPGPRGMPRGVPM 464
                 566689999*********************9833333333332222222223355557777777777777643337********************************976.799*********************9998766641111124555555555788888888888888523555555223566666555554410004566677776666666666554 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.1e-07   0.00041     288     359 ..       9      80 ..       2      91 .. 0.90
   2 !    8.1   0.0   0.00035      0.18     298     370 ..     107     178 ..     100     192 .. 0.85
   3 !   26.1   0.0   1.2e-09     6e-07     295     366 ..     192     275 ..     168     310 .. 0.77
   4 !   32.2   0.1   1.7e-11   8.5e-09     287     386 ..     304     403 ..     284     413 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.1e-07
   TIGR01642 288 nsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLn 359
                 + + ++ s   ly+g+L  d+ +  + +L +  G++ +  + +d     s Gya++++++  +++ A+ ++n
  MMETSP1174-20130828|1051_1   9 GQQNTPYSSASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNFHNQADAERALDTMN 80 
                 55666778889********************************************************99988 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00035
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                  l+++nL   ++ + + +    FG++++ ++     + +sKGy+++ y+    ++ A+  +  i++ ++ ++v
  MMETSP1174-20130828|1051_1 107 NLFVKNLHASVTHKDLFDAFSLFGNVLSCKVAL-GPDAKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEV 178
                 699*************************99765.56789************9999999988888777776665 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.2e-09
   TIGR01642 295 sedklyignLPldlkddqvkeLLesFGdLkaFnli....Kdla........tGlsKGyaFceykdssvtdlAiaaLnGiklgdk 366
                 +   +y++n+P d ++  +  L e+ G++ + +++    Kd++         G+sKG+aF+ +k+   ++ A+++LnG+kl + 
  MMETSP1174-20130828|1051_1 192 EWTNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMmyteKDVEakpdrnlvAGKSKGFAFVAFKEHVAAKAAVETLNGMKLDES 275
                 4567***************************999867775544222222337****************************9763 PP

  == domain 4    score: 32.2 bits;  conditional E-value: 1.7e-11
   TIGR01642 287 vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvga.kqatieken 386
                  nsk  +     ly++nL   ++d+ ++   ++FG + +  ++K+ ++G+sKG++F+ + ++  ++ A + +n + l +k + v  A  g  +++++ ++ 
  MMETSP1174-20130828|1051_1 304 QNSKIQSYLGVNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKN-QDGSSKGFGFVCFSQPEEANAATNEMNSKLLLGKPIFVALAQRGDvRRTMLAQSH 403
                 666666667778********************************9.58****************************9999999999988752456666655 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   8.2e-09   4.2e-06      54     124 ..      13      84 ..       8      94 .. 0.89
   2 !   18.4   0.1   3.3e-07   0.00017     233     303 ..     105     180 ..      93     192 .. 0.83
   3 !   20.3   0.0   8.7e-08   4.4e-05      59     122 ..     194     270 ..     184     284 .. 0.85
   4 !   19.6   3.8   1.4e-07   7.3e-05     236     316 ..     316     401 ..     307     580 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 8.2e-09
   TIGR01648  54 qPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyei 124
                  P   + ++vG +  d+ e  l  lf++vG++  +r+  d +  +  Gya+v f n+ +a++a+  +n   i
  MMETSP1174-20130828|1051_1  13 TPYSSASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDaMLKRSLGYAYVNFHNQADAERALDTMNYTMI 84 
                 57778899********************************988999******************99875555 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.3e-07
   TIGR01648 233 vkilyvrnlmletteeiieksfsefkpGavervk.......kirdyafvhfedredavkamdelnGkeleGseievtl 303
                 v  l+v+nl  ++t   +   fs f  G v   k       k + y +vh+e  e+a +amd++    +  +e+ev+ 
  MMETSP1174-20130828|1051_1 105 VGNLFVKNLHASVTHKDLFDAFSLF--GNVLSCKvalgpdaKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVMA 180
                 6679**************9999999..6655444334444599**************************999999975 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 8.7e-08
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmm..........d...ldGknrGyafvtfcnkeeakeavkelnny 122
                 ++++v  +P d  e  l+ lfe+ G++   ++mm          d   + Gk +G+afv f + ++ak av  ln  
  MMETSP1174-20130828|1051_1 194 TNIYVKNVPEDWDEPRLLKLFEEHGEVISAKIMMytekdveakpDrnlVAGKSKGFAFVAFKEHVAAKAAVETLNGM 270
                 89********************************777755555533344699*********************9975 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.4e-07
   TIGR01648 236 lyvrnlmletteeiieksfsefkpGavervkkird.....yafvhfedredavkamdelnGkeleGseievtlakPvdkesyvryt 316
                 lyv+nl  ++t+  ++  f++f   +  r+ k +d     + fv f++ e+a  a +e+n k l G++i v+la+  d  + +  +
  MMETSP1174-20130828|1051_1 316 LYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQDgsskgFGFVCFSQPEEANAATNEMNSKLLLGKPIFVALAQRGDVRRTMLAQ 401
                 89999999999999999999996666678888766555557899999999999999999999999999999999888876444333 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   1.4e-15   7.3e-13      93     265 ..       5     169 ..       2     179 .. 0.86
   2 !   22.4   0.4   1.8e-08   9.4e-06     142     264 ..     242     376 ..     237     386 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.4e-15
   TIGR01645  93 qqrqvqrqqalaimsrvvGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPsnlpqaqpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlf 265
                 qq   q++   +  s  vG +  ++ e +l   f+  GP+ si +  d++ ++  g+a+v+      a  al+ mn +++  r  ++   +  p  +        ++   n  v  +h  ++++dl   f  fG++++ck+a +p + k kG+G++ +e  ++ +ea+  m   
  MMETSP1174-20130828|1051_1   5 QQNSGQQNTPYSSASLYVGDLAPDVSEGLLFDLFNTVGPVASIRVCRDAMLKRSLGYAYVNfHNQADAERALDTMNYTMIKSRSCRIMWSQRDPSLR--------KSGVGNLFVKNLHASVTHKDLFDAFSLFGNVLSCKVALGPDA-KSKGYGYVHYETEEAAKEAMDKMKDI 169
                 56666777777888888********************************************66667799****************998766555432........23334556********************************87.579*****************999755 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.8e-08
   TIGR01645 142 vtqkhkgfafve.evPeaallaleqmngallGG....rnlkvgrPsnlpqaq....piidevqe.eakkf...nrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnl 264
                 v++k kgfafv      aa+ a e +ng+ l      ++l vgr +          +   e+q+ + +++   n  v  + + ++++dl + f+ fG i + ++ ++  + + kGfGf+ f + +  + a   mn 
  MMETSP1174-20130828|1051_1 242 VAGKSKGFAFVAfKEHVAAKAAVETLNGMKLDEseepKELYVGRAQKRTERErelrKKFAEIQNsKIQSYlgvNLYVKNLDDSMTDKDLHAAFDKFGTITSARIMKNQDG-SSKGFGFVCFSQPEEANAATNEMNS 376
                 67899******97777899*********9997522336788996665544320000223334431334442215559999999*******************99998765.679*********9999999999995 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0095       4.9     311     371 ..      29      94 ..       4     106 .. 0.53
   2 !   15.3   0.0   3.2e-06    0.0017     301     371 ..     108     181 ..      94     192 .. 0.84
   3 ?    3.1   0.1     0.016       8.3     420     452 ..     198     231 ..     182     284 .. 0.63
   4 !   15.2   0.0   3.3e-06    0.0017     286     377 ..     302     395 ..     268     408 .. 0.70
   5 ?   -3.4   1.9       1.5   7.7e+02     220     290 ..     506     571 ..     489     587 .. 0.48

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0095
   TIGR01649 311 vtpdalFnlfgvYGdvervk.....ilknkketalvemadpqqaqlalthLdkvklfgkklrvavS 371
                 v    lF lf   G v  ++     +lk   + a v++ ++ +a++al+ ++ + +  +  r++ S
  MMETSP1174-20130828|1051_1  29 VSEGLLFDLFNTVGPVASIRvcrdaMLKRSLGYAYVNFHNQADAERALDTMNYTMIKSRSCRIMWS 94 
                 333345555555555544431111134444455555555555555555555555555555555555 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3.2e-06
   TIGR01649 301 llvsnLeeekvtpdalFnlfgvYGdvervkil....knkketalvemadpqqaqlalthLdkvklfgkklrvavS 371
                 l+v nL+   vt + lF  f+++G+v   k+      + k+ + v + ++++a+ a++ +++  + +++++v++ 
  MMETSP1174-20130828|1051_1 108 LFVKNLHA-SVTHKDLFDAFSLFGNVLSCKVAlgpdAKSKGYGYVHYETEEAAKEAMDKMKDISICNQEVEVMAF 181
                 88999986.699999***********99998633334578999****************************9975 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.016
   TIGR01649 420 lsNiPlsvsEedlkelfaekgv.kvkafkvFpkd 452
                   N+P   +E  l++lf+e+g+    ++ ++ ++
  MMETSP1174-20130828|1051_1 198 VKNVPEDWDEPRLLKLFEEHGEvISAKIMMYTEK 231
                 5688888888888888888877444455555554 PP

  == domain 4    score: 15.2 bits;  conditional E-value: 3.3e-06
   TIGR01649 286 aisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknkket....alvemadpqqaqlalthLdkvklfgkklrvavSkqeavq 377
                 +i++ + + s lg  l v nL+++ +t + l   f  +G ++  +i+kn+ ++    ++v +++p++a+ a + ++ + l gk++ va++++  v 
  MMETSP1174-20130828|1051_1 302 EIQNSKIQ-SYLGVNLYVKNLDDS-MTDKDLHAAFDKFGTITSARIMKNQDGSskgfGFVCFSQPEEANAATNEMNSKLLLGKPIFVALAQRGDVR 395
                 44444444.444556788999876.56667899999999999999999875542222789999999999999999999999999988888776664 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 1.5
   TIGR01649 220 eleqtaaqrqd.......allrdrPssygdavdglssrtgalaplalgdraglaaglapsreslalasaalapaisst 290
                  ++q ++qr +       ++ ++rP + g            ++  a ++ a++aa  ap++  l l ++a+a+++++ 
  MMETSP1174-20130828|1051_1 506 RQNQPQTQRNNqqykfneQARNQRPGQPG------------QPGTAAPQPAPPAAQAAPAQGPLTLSALANADPSQQK 571
                 33333333332111112233333333333............3333344444455555566666666666655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.92
# Mc/sec: 916.75
//
Query:       MMETSP1174-20130828|1059_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1020.72
//
Query:       MMETSP1174-20130828|1063_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 271.52
//
Query:       MMETSP1174-20130828|1065_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 563.49
//
Query:       MMETSP1174-20130828|1068_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 618.88
//
Query:       MMETSP1174-20130828|1067_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.59
# Mc/sec: 1684.54
//
Query:       MMETSP1174-20130828|1069_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.9   0.0       0.02   11.4   0.0    1.1  1  TIGR00398 metG: methionine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.9e-06      0.02      82     144 ..     150     213 ..     142     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.9e-06
   TIGR00398  82 nisfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdr.yvegecpkcke 144
                  i f +FirT+d +h+++       +l  G+i  + i+     + ++++++r +  g ++++k+
  MMETSP1174-20130828|1069_1 150 RITFQEFIRTHDVKHRHVGDFSMLACLFGGFIVDDVIQMRSRKQTSKYCKERgNMRGSKNTIKS 213
                 599**********************************999999999999999655565555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 915.67
//
Query:       MMETSP1174-20130828|1073_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-22   77.7   9.0    2.2e-22   77.6   6.2    1.0  1  TIGR01147 V_ATP_synt_G: V-type ATPase, G subunit
    0.00028   18.9  17.3    0.00032   18.7  10.8    1.7  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit
    0.00074   15.9   8.1    0.00087   15.7   5.6    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
  ------ inclusion threshold ------
      0.014   13.1  13.3      0.024   12.4   9.2    1.3  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
      0.051   10.3   3.0      0.062   10.0   2.0    1.0  1  TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits
       0.51    6.8   5.1       0.57    6.6   3.5    1.0  1  TIGR00437 feoB: ferrous iron transport protein B
        1.8    6.5  11.7        2.6    6.0   7.5    1.7  1  TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family


Domain annotation for each model (and alignments):
>> TIGR01147  V_ATP_synt_G: V-type ATPase, G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   6.2   3.7e-25   2.2e-22       6     107 ..       8     107 ..       1     108 [] 0.92

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 3.7e-25
   TIGR01147   6 qGiqqLLqAekrAaekvseARkrkakrlkqAkeeAqkevekYklqkekefkefeakalggkeeveekieaeteekiaelkkaveknkeevikdllelvidik 107
                 +Giq+L++Ae rA+ +v+eAR++k +++kqAk++A+  +e+Y++q e+ef ++ ++  +  ++ ++ki+++t ++i+++k   + nke+ i+ +l+ v++++
  MMETSP1174-20130828|1073_1   8 SGIQELMAAETRATTIVKEARDQKVEKMKQAKQQANSIIEEYRQQMEAEFLAKTQDL-EV-KDDSTKIQEQTSAEIQKMKGDYAANKEATIEMMLNYVCTVS 107
                 6*************************************************9998764.44.455799********************************986 PP

>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  10.8   5.5e-07   0.00032       1      78 [.      10      85 ..      10      92 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.5e-07
   TIGR02926  1 leeikkAEekaeelieeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaee.eiekEaekIleegekeieelk 78
                ++e   AE  a  +++eA++++ +++++A+++A++++ee  +   +   e l++ ++ e++    kI e++  ei+++k
  MMETSP1174-20130828|1073_1 10 IQELMAAETRATTIVKEARDQKVEKMKQAKQQANSIIEEYRQ---QMEAEFLAKTQDlEVKDDSTKIQEQTSAEIQKMK 85
                678899*******************************99875...555666666554399*****************98 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.6   1.5e-06   0.00087      26      96 ..      12      82 ..       7     104 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
   TIGR03319 26 kleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkk 96
                +l +ae++a++i++ea+ +  +k k+a  +a++ ++++r+++e+e+ +++++l+ +++  k +e++ ++ +
  MMETSP1174-20130828|1073_1 12 ELMAAETRATTIVKEARDQKVEKMKQAKQQANSIIEEYRQQMEAEFLAKTQDLEVKDDSTKIQEQTSAEIQ 82
                56788999999999999999999999999999999999999999999999988877766665555433332 PP

>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   9.2   4.1e-05     0.024      34     105 ..      12      86 ..       8      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.1e-05
   TIGR01144  34 dlasaek.akkelalaqkkaqellkeakeeaaeiienAnkrks.eikeei.kkeAeeerekilakaeaeieaeke 105
                 +l +ae  a   +++a++++ e++k+ak++a++iie+  ++ + e + +    e +++++ki ++  aei+++k 
  MMETSP1174-20130828|1073_1  12 ELMAAETrATTIVKEARDQKVEKMKQAKQQANSIIEEYRQQMEaEFLAKTqDLEVKDDSTKIQEQTSAEIQKMKG 86 
                 45566640445567788888899*************9877654144444404589999*************9985 PP

>> TIGR03243  arg_catab_AOST: arginine and ornithine succinyltransferase subunits
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.0   0.00011     0.062     257     329 ..      14      88 ..      11      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR03243 257 leaevddiravresrrvevkveesaaedaeeylvsn...ekledfravlaelslaagelvlsadaadalkvseGde 329
                 ++ae+  ++ v+e+r  +v++ ++a+++ ++ ++ +   +  ++f a + +l++++++  +++++ + ++  +Gd 
  MMETSP1174-20130828|1073_1  14 MAAETRATTIVKEARDQKVEKMKQAKQQ-ANSIIEEyrqQMEAEFLAKTQDLEVKDDSTKIQEQTSAEIQKMKGDY 88 
                 679999999*************999999.666665411144578999**********************9999985 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.5   0.00097      0.57     135     221 ..      13      95 ..       3     107 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00097
   TIGR00437 135 lsatkgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkke 221
                 l a++ r +  +k+a d +k +k+++ k++a  i++e++++ e+++ +k+++ ++k +    +++ e++++ei+k++  +a+  +++
  MMETSP1174-20130828|1073_1  13 LMAAETRATTIVKEARD-QKVEKMKQAKQQANSIIEEYRQQMEAEFLAKTQDLEVKDD---STKIQEQTSAEIQKMKGDYAANKEAT 95 
                 45555555555555544.7888888888888888888888888887666665555443...44555566666666666666555444 PP

>> TIGR02499  HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.5    0.0044       2.6      11      65 ..      15      66 ..      10      85 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0044
   TIGR02499 11 ala.qAeailaaArqkaekliadaeeeaeasrqegyeqgleqawqeaaaqlvewlq 65
                a + +A +i+ +Ar++  + +++a+++a       +e+ ++q+++e++a++++  +
  MMETSP1174-20130828|1073_1 15 AAEtRATTIVKEARDQKVEKMKQAKQQANS----IIEEYRQQMEAEFLAKTQDLEV 66
                223477778888888777777777777777....5556666666666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       712  (0.173574); expected 82.0 (0.02)
Passed bias filter:                      253  (0.0616772); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|1078_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   33.2   0.1    1.9e-07   29.1   0.0    1.9  2  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.038   11.9   0.0       0.04   11.9   0.0    1.1  1  TIGR02373 photo_yellow: photoactive yellow protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0015       3.1     109     125 ..       2      18 ..       1      19 [. 0.91
   2 !   29.1   0.0   9.2e-11   1.9e-07       3      49 ..      15      61 ..      14      62 .] 0.96

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0015
   TIGR00229 109 vvgivrDIterkeaeee 125
                 vvgi +DIt r  +e+e
  MMETSP1174-20130828|1078_1   2 VVGIGQDITARIAQEQE 18 
                 89**********99997 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 9.2e-11
   TIGR00229  3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrn 49
                +e+ y  ++++++++i+ vd++G +  +N+a   ++GY+++e +G++
  MMETSP1174-20130828|1078_1 15 QEQEYVRLIDTANAPIFGVDKNGLVSVWNKASTNVTGYTRKETMGHH 61
                7999****************************************987 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.04       8      59 ..       7      60 ..       2      62 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
   TIGR02373  8 edientlakmgd.ae.ldalafGaiqldesGrilkynkaegelaGrdPekviGk 59
                +di   +a++++  + +d+       +d++G +  +nka ++++G + ++ +G+
  MMETSP1174-20130828|1078_1  7 QDITARIAQEQEyVRlIDTANAPIFGVDKNGLVSVWNKASTNVTGYTRKETMGH 60
                466666666554234145555556679*******************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 255.73
//
Query:       MMETSP1174-20130828|1079_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 372.68
//
Query:       MMETSP1174-20130828|1080_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|1089_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 162.45
//
Query:       MMETSP1174-20130828|1093_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.8   2.0       0.01   13.7   1.4    1.1  1  TIGR03826 YvyF: flagellar operon protein TIGR03826


Domain annotation for each model (and alignments):
>> TIGR03826  YvyF: flagellar operon protein TIGR03826
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.4   2.5e-06      0.01      95     132 ..       9      52 ..       4      57 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
   TIGR03826  95 rlCesCaeelkkelsaleeekekkkekek......ekkdtyyil 132
                   C+ C++e+k++l+a+  ek+ k+  +k      e+k ++ ++
  MMETSP1174-20130828|1093_1   9 EACARCENEIKAKLQAMAGEKKAKDALTKaragseERKAQLVVA 52 
                 57***************999998874333223333445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|1098_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 908.09
//
Query:       MMETSP1174-20130828|1109_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|1112_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.52
# Mc/sec: 205.60
//
Query:       MMETSP1174-20130828|1114_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 344.87
//
Query:       MMETSP1174-20130828|1115_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 431.16
//
Query:       MMETSP1174-20130828|1116_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|1119_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   11.2   0.8       0.06   10.9   0.5    1.2  1  TIGR01119 lacB: galactose-6-phosphate isomerase, LacB subunit


Domain annotation for each model (and alignments):
>> TIGR01119  lacB: galactose-6-phosphate isomerase, LacB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   1.5e-05      0.06     109     165 ..       4      63 ..       1      71 [. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.5e-05
   TIGR01119 109 aiigelllldiidafieaey.kpteenkkliakikhlethna..kqadeeffdeflekwd 165
                  ++ ++  ++i +  + a+y k +een kl  +i+ le +++  ++   ++f+ef  k +
  MMETSP1174-20130828|1119_1   4 ELMDKMRNMEIHNGKLVARYeKVAEENGKLRLRIEELERREKrnEKYKMDMFEEFKLKIE 63 
                 566666777888888888885679*************98765115566789999966544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 328.28
//
Query:       MMETSP1174-20130828|1129_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|1134_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1317.40
//
Query:       MMETSP1174-20130828|1136_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|1138_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 305.22
//
Query:       MMETSP1174-20130828|1140_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 625.21
//
Query:       MMETSP1174-20130828|1142_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|1156_1  [L=1260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1522.4   0.0          0 1522.2   0.0    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
   1.2e-149  498.0   0.0   3.2e-136  453.5   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
   1.9e-149  496.1   0.0   2.8e-149  495.6   0.0    1.2  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   1.5e-126  421.1   0.0   3.2e-126  419.9   0.0    1.5  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    1.1e-15   54.2   0.0    1.5e-15   53.8   0.0    1.1  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
      7e-13   46.0   0.0    1.3e-12   45.2   0.0    1.3  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    3.1e-11   40.9   0.0    5.5e-11   40.1   0.0    1.3  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    2.8e-10   37.8   0.0    6.5e-10   36.6   0.0    1.5  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    1.9e-09   35.0   0.4    3.9e-09   34.0   0.3    1.4  1  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
    3.8e-09   34.1   0.0    9.2e-09   32.9   0.0    1.5  1  TIGR02660 nifV_homocitr: homocitrate synthase
    4.3e-08   30.3   0.6    0.00076   16.3   0.1    2.6  3  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
    1.7e-07   28.5   0.0    3.3e-07   27.6   0.0    1.4  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
    4.9e-07   26.7   0.0    9.3e-07   25.8   0.0    1.3  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
      5e-07   26.4   0.5      1e-06   25.4   0.3    1.4  1  TIGR00973 leuA_bact: 2-isopropylmalate synthase
    5.5e-07   27.0   0.0      4e-06   24.2   0.0    2.2  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    2.5e-06   23.6   0.0    3.7e-06   23.0   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    8.8e-06   22.8   0.0      2e-05   21.6   0.0    1.5  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    1.1e-05   23.8   0.4    2.4e-05   22.7   0.3    1.5  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
    1.6e-05   21.8   0.0    2.6e-05   21.1   0.0    1.3  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    7.6e-05   19.5   0.6    0.00013   18.8   0.4    1.3  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    8.9e-05   19.0   0.5    0.00017   18.1   0.3    1.4  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    0.00015   18.0   0.1    0.00027   17.2   0.1    1.2  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
     0.0015   15.7   0.1     0.0015   15.7   0.1    1.8  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
     0.0015   15.4   0.3      0.008   13.0   0.0    2.0  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
     0.0029   14.4   0.3     0.0059   13.5   0.0    1.5  2  TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog
  ------ inclusion threshold ------
      0.015   12.0   0.7       0.78    6.4   0.1    2.3  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
      0.021   11.6   0.2       0.85    6.3   0.0    2.2  2  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1522.2   0.0         0         0       2    1143 .]      85    1258 ..      84    1258 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1522.2 bits;  conditional E-value: 0
   TIGR01235    2 vlvanrgeiairvfraanelgirtvavyseedklslhrqkadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpeqediktkGyaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidetPelfqlvksk..dr...........atklltyladvtvnGsie.lkkklkpleskprvvkleadqspv..........krGtkqildekGpeefakavreqksvlltdttfrdahqsllatrvrthdlakiapttahal.aelfslevwGGatfdvalrflkedPwerledlrkevPnilfqmllrganavgytnyPdnvvkkfvkqaaqsGidifrvfdslnylenlklgvdavkeagkvveaaicytGdildka.kkkydlkyytelaeelekaGahilaikdmaGllkPaaaklliaalrekt.dlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGseldtglnveevrelsayweevrklyaafesdlkspdaevylheiPGGqytnlkeqakslGlgdrweevkkayreanqllGdivkvtPsskvvGdlalfmvsnkltaddvvekaeeldfPdsvvellkGaiGqPhgGfPeklrkkvlkd......ekkltvrPGellepldlekikkdlkekl.erevsdldvvsyalyPkvfedylkaresyGdvsvldtraflsglkvgeeleveiekGktliikllavgetksdgerevyfelnGqlrkvkvkdrsakaev....avrskadkgnkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvle 1143
                  v+ anr+eia+r++raa+el+++++ +y +ed+ s hr+ ad+++ +  +   +P +ayl+i++ii+vak n+vdaihPGyGflse++efa ++ +aGi+f+GP+ e l ++ dk +are+ai agv vvPgtdg v++ e++++f+++ G+Pvi+ka++GGGG+Gmrvvr+ e++   fe a+sea a+fG++++++e++++ p+hievq++gd +Gnvvhl+erdcsvqrrhqkv+e+aPa +l+ e+r kl ++av+l+ + ny+naGtveflvd+++++yfievnpriqvehtvtee+tGid+v++qi va Gas++  +lgl+ qe+i  +G a+qcr+tte+ ++df PdtG + vyr ++G G+r+dg   y+G  ++pyydsllvk +a a+t+e ++++m ral e+ irGvktni+fl++vl ++ f+ g+ +tsfid++P+l+++ + k  +r            +k l+y+a+v+vnG++  l   +  l+  p+  +++ d +++          +  ++ +++e+Gp+ +akavre+k++l+tdtt+rdahqsllatr+rthdl + a++t++ l ++ fsle+wGGatfdv++rfl+e+Pw+rl+ lr+ vP+i+fqmllrgan+vgyt+yPdnvv +f+k+a + Gidifrvfdslny en++lg++a++ +g+ veaaicytGd+ +++  +ky l+yy++ a el+++G+h laikdmaGll Paaa ll++ lre+  d+Pih+hthdt Ga+v+s+laa++aG+d+vd a+d++sG+tsqPslga++aa +G   dtg+ +++++ l+ ywe+vr +y +fes+  s++++v++heiPGGqytnl +q+k+lGl  r++e+k+ay++an llGdi kvtPsskvvGdla+f+v + lt ++++e a  l++P+svve+++G++G P+gGfPe+lr++vl +      +  +t+rPG+++ep ++e+    lke + e+ +sdldv+s a+yP vf+++l  +  yG+++ l+t++f+ ++++g+e++ ++  G+   + l a+++ + +g r+v fe+nG+   ++ +d++ + ++    a r+kad  +k  vg +mpGvv++v vk+G++v++G++l +l+amkmet+++ap +G v +vl + G++++a+dll+v+e
  MMETSP1174-20130828|1156_1   85 VMAANRAEIAVRIMRAATELNMESIGIYGNEDRKSAHRWGADKSFELPAS--GTPAGAYLNIENIIKVAKDNNVDAIHPGYGFLSESPEFAAACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVPGTDGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEALASFGDGSCFIERYVDSPRHIEVQIVGDGKGNVVHLWERDCSVQRRHQKVIEIAPAWNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDKEGRHYFIEVNPRIQVEHTVTEEVTGIDLVQTQILVAGGASFE--ELGLK-QENIVPRGCALQCRITTENCERDFAPDTGVLSVYRHSSGPGMRVDG-IGYSGMAVTPYYDSLLVKYTARAATWELVVRRMRRALLEMTIRGVKTNISFLLNVLAHQEFIAGTVTTSFIDQNPNLLKIQQTKwtHRhwqsshkkvflVEKYLRYIANVAVNGHPAtLGASPDALKLMPSKEVVPPDMKAIaeaqagcelaAPKWRALMREQGPAALAKAVREHKGLLVTDTTWRDAHQSLLATRMRTHDLERSAEATTAVLgSQAFSLEMWGGATFDVSMRFLHECPWKRLKVLREAVPDIPFQMLLRGANGVGYTSYPDNVVFEFCKKAFEEGIDIFRVFDSLNYAENMRLGIEAAAASGGFVEAAICYTGDVTNDSpDNKYSLSYYMDYAAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFpDVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQGGAHDTGISLKSLQPLNRYWEDVRFMYIPFESGQLSSSSDVFEHEIPGGQYTNLLFQSKQLGLTGRFSEIKRAYAQANMLLGDIPKVTPSSKVVGDLAQFIVAEGLTPEEIIEDATILNLPNSVVEYFQGTLGSPPGGFPEPLRSRVLEGrpladgRACYTGRPGAEMEPYNFEEAAASLKEVYgEERISDLDVLSHAMYPAVFKEWLLYESIYGELESLPTHVFVRPMSIGDEVHFKVGDGRRYFLTLDAISDVDASGSRQVTFEVNGERWFIRTTDETPVMTAggggARREKADSFEKGSVGCSMPGVVVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  899********************************************988..79***************************************************************************************************************************************************************************************************************************************************************************..****9.*********************************************6.68***************************************************************************976554322332222222222236889**********76516777778888888888888887777889999999889***************************************************98888773678*************************************************************************************************************8754278**********************************************************************************************************************************************************************************************************************************************************872221124579**********************993456*******************************************************************************************9888753333799*************************************************************************9986 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.5   0.0  2.1e-138  3.2e-136       1     441 [.      82     527 ..      82     537 .. 0.97
   2 !   42.4   0.0   2.7e-14   4.1e-12    1080    1201 .]    1135    1258 ..    1116    1258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 453.5 bits;  conditional E-value: 2.1e-138
   TIGR02712   1 fkkvlianrGeiavriirtlkklgirsvavysdadkasqhvkdadeavalge.ataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGt.gllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelkve..kprGaaiearvyaedPakdfqPspGlltevkfPed..vrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrllek 441
                 fk+v+ anr eiavri+r++ +l+++s+ +y + d++s h   ad++  l    t a +yl+i++i+++ak+ +++ai+PGyGflse+ +fa ac++agi+fvGPt e+l ++  k +are+a aagv ++pGt g ++s e+a e  +e g+Pv++k++ GGGG G++ v+++e+l   fes    + ++f+d   f+e++v++ rh+evqi+GdgkG+vv l erdCs+qrr+qkv+e +Pa nlp e+r kl++ a++l++a ny+ aGtvef+ d+ +++ yf+evn r+qveh vte+vtg+dlv+  + +a+g++ ++  lk+e  +prG a++ r+ +e+  +df+P +G+l+  +  +   +rvd+    G+ v+++yd +l k  + +++ e  ++++++al e ++ G++tn+++l +++++++f +++v+t+++++
  MMETSP1174-20130828|1156_1  82 FKRVMAANRAEIAVRIMRAATELNMESIGIYGNEDRKSAHRWGADKSFELPAsGTPAGAYLNIENIIKVAKDNNVDAIHPGYGFLSESPEFAAACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVPGTdGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEALASFGDGSCFIERYVDSPRHIEVQIVGDGKGNVVHLWERDCSVQRRHQKVIEIAPAWNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDK-EGRHYFIEVNPRIQVEHTVTEEVTGIDLVQTQILVAGGASFEELGLKQEniVPRGCALQCRITTENCERDFAPDTGVLSVYRHSSGpgMRVDGIGYSGMAVTPYYDSLLVKYTARAATWELVVRRMRRALLEMTIRGVKTNISFLLNVLAHQEFIAGTVTTSFIDQ 527
                 899***********************************************76267899***************************************************************************95689********************************************************************************************************************************************97.5789*********************************9988777777666799**************************999887777**************************************************************************9987 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 2.7e-14
   TIGR02712 1080 flaee.adsieafkerqqaafeeeraklkkeaeaelkeeke...eaaeeeaeleegavaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvle 1201
                  fl+ +  ++++a  +rq   fe + +++  ++++e+   +      a+ e+  + ++ +v +++ g +  v v++g+ev+ag++l i+ amkme++++ap +G v ++l++ Gd+vea d+l+v+e
  MMETSP1174-20130828|1156_1 1135 FLTLDaISDVDASGSRQ-VTFEVNGERWFIRTTDETPVMTAgggG-ARREKADSFEKGSVGCSMPGVVVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  34433044555555555.667777777766666655554444542.3333333334457999************************************************************9996 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.6   0.0  1.8e-151  2.8e-149       2     444 ..      82     528 ..      81     533 .. 0.98

  Alignments for each domain:
  == domain 1    score: 495.6 bits;  conditional E-value: 1.8e-151
   TIGR00514   2 ldkilianrGeialrilrackelGiktvavystadkdalhvkladeavciGea.asaksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakG...eklslkqedvklkGhaiecrinaedpsknflpspGriksylppgGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylekk 444
                 +++++ anr eia+ri+ra+ el ++++ +y + d++  h   ad+++ +  + + a +ylni nii +a+ +++daihpGyGflse  +fa  ++e+g+tf+Gp+ e +    dk+ a+e++  agv vvpG+dG v + e+a e  +e G pviika+ GGGG+G+rvvr+ ++lv  ++ a +ea a+f++ ++++e++++ prh+e+q+++d  Gnvv+l erdcs+qrr+qk++e ap+  l  elr k+ + av+++++ +y+ aGtvefl+dkeg++yf+e+n riqveh+vte+vtg+dl++ qi va G   e+l lkqe+++ +G a++cri +e+ +++f p  G ++ y  ++G+g+rvd+  ysg av pyydsl+ k  + + t e  ++rm+ral e++i G+kt+i+f   +l +++f  g v +++++++
  MMETSP1174-20130828|1156_1  82 FKRVMAANRAEIAVRIMRAATELNMESIGIYGNEDRKSAHRWGADKSFELPASgTPAGAYLNIENIIKVAKDNNVDAIHPGYGFLSESPEFAAACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVPGTDGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEALASFGDGSCFIERYVDSPRHIEVQIVGDGKGNVVHLWERDCSVQRRHQKVIEIAPAWNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDKEGRHYFIEVNPRIQVEHTVTEEVTGIDLVQTQILVAGGasfEELGLKQENIVPRGCALQCRITTENCERDFAPDTGVLSVYRHSSGPGMRVDGIGYSGMAVTPYYDSLLVKYTARAATWELVVRRMRRALLEMTIRGVKTNISFLLNVLAHQEFIAGTVTTSFIDQN 528
                 5899********************************************99665156889****************************************************************************************************************************************************************************************************************************************************************9994445799***********************************************************************************************************************986 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   3.5e+02     389     455 ..     318     385 ..     312     400 .. 0.66
   2 !  419.9   0.0  2.1e-128  3.2e-126       1     582 []     634    1254 ..     634    1254 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.3
   TIGR01108 389 ailevrPadllepeld.klraevreagaekesdeDvLlvalfpevgkkflenrenpvafeeaveekki 455
                 +++e+ Pa  l+ el  kl++++++ +a ++ ++   +  l+++ g++++ + +  + +e++v+e+++
  MMETSP1174-20130828|1156_1 318 KVIEIAPAWNLPMELRlKLHDDAVRLTAANNYKNAGTVEFLVDKEGRHYFIEVNPRIQVEHTVTEEVT 385
                 55577777777777755777777777777766666666777777777777766666777776666544 PP

  == domain 2    score: 419.9 bits;  conditional E-value: 2.1e-128
   TIGR01108    1 itdvvlrdahqsllatrlrteDmLpileklDkv...gywslevWGGatfDaclrfLkedPWerLrelkkalkntklqmLLrGqnllGyrhyaDDvvekfvkkavenGldvfrifDalnDarnlkkaieavkkhgahvqgalsyt...i..sP..vhtlekylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve.lpvelhshattglaelallkaieaGvdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfrevrkkyakfeselkgiDsrilvaqvPGGmlsnlesqLkeqnaldkldevleeiprvreDlGyiPLvtPtsqivGtqavlnvltGeryktit.........ketkdlvkGeyGrtPapikaelvkkvlgde.....kailevrPadllep.eldklraevrea.gaekesdeDvLlvalfpevgkkflenrenpvafeeaveek.....ki.eeeavkvv.akaveeaasavytvevegkae...evkvseskevskleasaaaaksagtva..akakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582 
                  +td++ rdahqsllatr+rt+D+   +e+   v     +sle+WGGatfD+++rfL+e PW+rL+ l++a+++ ++qmLLrG n +Gy  y+D+vv +f kka e+G+d+fr+fD+ln a n++  iea+   g +v++a++yt   +  sP   + l +y++ a el+e+g  s+aikDmaGlLtP aa  Lvs+l+++++ +p+++h+h t g    ++l+a++aG+d++D ai ++s+ ts+p+  a++aa ++ ++dtg+ ++ l+ ++ y ++vr  y  fes      s +  + +PGG ++nl+ q k+  ++ ++ e+ +   +    lG iP vtP s++vG  a + v  G   + i          + + ++ +G+ G +P+   + l+ +vl++      +a ++ rP+  +ep ++++  a ++e+ g+e+ sd DvL+ a++p v k++l   +    +e+ +++       i +e ++kv  ++    +  a+  v  +g  +   ev+ +    +++ e+ +++a  +g++   a++   ++v ++++G +v+v+v+eG+evk+Ge l++l amkmet ika+ +Giv  +l ++Gd+v +++ l
  MMETSP1174-20130828|1156_1  634 VTDTTWRDAHQSLLATRMRTHDLERSAEATTAVlgsQAFSLEMWGGATFDVSMRFLHECPWKRLKVLREAVPDIPFQMLLRGANGVGYTSYPDNVVFEFCKKAFEEGIDIFRVFDSLNYAENMRLGIEAAAASGGFVEAAICYTgdvTndSPdnKYSLSYYMDYAAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFPdVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQGGAHDTGISLKSLQPLNRYWEDVRFMYIPFESGQLSSSSDVFEHEIPGGQYTNLLFQSKQLGLTGRFSEIKRAYAQANMLLGDIPKVTPSSKVVGDLAQFIVAEGLTPEEIIedatilnlpNSVVEYFQGTLGSPPGGFPEPLRSRVLEGRpladgRACYTGRPGAEMEPyNFEEAAASLKEVyGEERISDLDVLSHAMYPAVFKEWLLYESIYGELESLPTHVfvrpmSIgDEVHFKVGdGRRYFLTLDAISDVDASGSRQvtfEVNGERWFIRTTDETPVMTAGGGGARRekADSFEKGSVGCSMPGVVVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLL 1254
                  79********************98877765554322678********************************************************************************************************95541446733579********************************************77*****************************************************************************************************************************************************9999998886555544111111222567899********************997655555788999**99998758999999999863777799******************9877755566666555333321123333333201222222333334444443321002222222222222223333333334432355556789***********************************************************9976 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   9.7e-18   1.5e-15     617     873 ..     143     406 ..     140     421 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 9.7e-18
   TIGR01369 617 tvedvldiiekekvegvivqlgGq.talnlakeleeagvkilGtsaesidraEdRekFsklldelgikqp..kgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryle....eavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkd.eevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleele 873
                 ++e+++++ + ++v+ +   +g    + ++a + +eag++ +G ++e++ +  d++k  ++    g+     +  ++ts e+a+e+++e g+Pv++++s   gG++m++v+n+e+l  ++e    ea++   +    i++y+++   ++v +v dg+  +++           H    + + p+ +l  e+  k+++ + +++ + ++k    + f+v++ ++ y iEvn+R      +   ++g++lv++ + v  g++ eel+
  MMETSP1174-20130828|1156_1 143 NIENIIKVAKDNNVDAIHPGYGFLsESPEFAAACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVpgTDGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFEsassEALASFGDGSCFIERYVDSPRHIEVQIVGDGKGNVVHLWERDCSVQRRHQ-KVIEIAPAWNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDKeGRHYFIEVNPRIQVEHTVTEEVTGIDLVQTQILVAGGASFEELG 406
                 5677777777777766655555431345789999************************9998777776651155689****************************************999933333444445678*********************9999887766666666665.678899**********************************9987599****************************99998888888865 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   8.4e-15   1.3e-12      84     285 ..     174     372 ..     115     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 8.4e-15
   TIGR01205  84 glLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey......deevlveeai.kgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285
                 +    +gi +vG+ v+      dK   ++++ a+g+ v++ +    ++ +   + +e ++++glpvi+K++  G   G+ +v+++e+l  ++e a +       d ++++e+++ + r +ev +++ + + ++++  e ++  +     ++  ++  e++   +l+ e+  k+++ a+++ +a + ++ + v+f+++keg+ y+ E+N+
  MMETSP1174-20130828|1156_1 174 AACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVPGTDGAVTSPE---QAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEalasfgDGSCFIERYVdSPRHIEVQIVG-DGKGNVVHLWERDC--S----VQRRHQKVIEIAPAWNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDKEGRHYFIEVNP 372
                 5556689**********99999*****************97744222222...34468899**************************98777766543222244899******62679********.66688999998888..2....2333333456666667999999**************************************8 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   3.6e-13   5.5e-11     147     266 ..     801     919 ..     778     933 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 3.6e-13
   TIGR02146 147 takeagvdrvsiaDtvGvatPrrvyelvrkvkrvvpgvdieihahnDlGlavanalaaiegGatvvdttvnGlGeraGivpLqvllaalyyhagvkvykLeklkeierlveeavgieipp 266
                 +  e+g   ++i D  G +tP  +  lv++++++ p v+i++h+h+ +G  v   laa ++Ga++vd ++  +   +    L+ ++aa +  a +  + L+ l+ ++r  e++  + ip+
  MMETSP1174-20130828|1156_1 801 L-VEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFPDVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQGGAHDTGISLKSLQPLNRYWEDVRFMYIPF 919
                 3.35889999***************************************************************99999999*******999999999*******9999998887777776 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   4.3e-12   6.5e-10      86     266 ..     184     374 ..     170     378 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 4.3e-12
   TIGR01161  86 vapspealallqdkltqkqllqklglavpeflv.elkeeeelekaleelglpvvlKarkggYDGrGqfvikseeel........eqalkalgdkelivEefvkfekElsvivaRskeGeva.fyPvvenlqkdgilrlvvapa.alpeklqkkaeelarklveeldlvGvlavElFlledgelLvNElApRv 266
                 v p  e l    dk++ +++  ++g+av + +  ++++ e+ e++++e+glpv++Ka+ gg  G+G  v++++e+l        ++al+++gd ++++E++v+  + + v ++ + +G+v+  +     +q+    ++ +apa +lp +l+ k ++ a +l+ + ++    +vE+ + ++g+ +  E+ pR 
  MMETSP1174-20130828|1156_1 184 VGPTVENLLSFSDKTKAREMAIAAGVAVVPGTDgAVTSPEQAEEFVDEFGLPVIIKASMGG-GGKGMRVVRNREDLvpffesasSEALASFGDGSCFIERYVDSPRHIEVQIVGDGKGNVVhLWERDCSVQRRHQKVIEIAPAwNLPMELRLKLHDDAVRLTAANNYKNAGTVEFLVDKEGRHYFIEVNPRI 374
                 56788899999****************9999988999********************9988.7*********9997333222224566677778************************976267888889999999999****99************************************99999999995 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.3   2.6e-11   3.9e-09     149     255 ..     798     903 ..     788     909 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2.6e-11
   TIGR03217 149 akllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahenlslavansivaveeGatridaslaglGagaGnaplevlvavldrlGletgvdlfkll 255
                 a+ l + G++ + + d aG l+p+ ++  v+ l+ea+  ++ + +h+h+ ++ +v+  ++a ++Ga+ +d+++ ++        l +++a+++    +tg+ l +l+
  MMETSP1174-20130828|1156_1 798 AAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFP-DVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQGGAHDTGISLKSLQ 903
                 5667789*****************************97.9*************************************9999**********9999999999988775 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     6e-11   9.2e-09     143     282 ..     793     934 ..     774     946 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 6e-11
   TIGR02660 143 flvelaevakeagakRlRfaDtvgvldPfstyelvkalraal.elelElHaHnDlGlAtAntlaavkaGassvsvtvlGlGERAGnAaleevalalkellgldtgidlselkelsqlvakasgraleaqkavv..GesvFaHE 282
                 + ++ a+ + e+g + l + D  g+l+P ++  lv++lr+a+ ++++ +H+H+ +G  +   laa+ aGa +v+ ++  +       +l  +++a  +    dtgi+l++l+ l ++ +    + ++ +       ++vF+HE
  MMETSP1174-20130828|1156_1 793 YYMDYAAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFpDVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAAT-QGGAHDTGISLKSLQPLNRYWEDVRFMYIPFESGQLssSSDVFEHE 934
                 56677788899******************************979************************************9999999999988887.778889*********9999988877777776544330134577777 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5   5.3e+02     191     227 ..    1122    1156 ..    1116    1160 .. 0.77
   2 !   11.7   0.0   0.00013     0.019      26      58 ..    1189    1221 ..    1183    1226 .. 0.84
   3 !   16.3   0.1     5e-06   0.00076     134     166 ..    1226    1258 ..    1222    1260 .] 0.92

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.5
   TIGR01730  191 ltvvldaepgeefkgklkeidprvdsatgtvrvraef 227 
                  ++v++++ +g+ + ++l++i+ + d a+g+ +v++e+
  MMETSP1174-20130828|1156_1 1122 DEVHFKVGDGRRYFLTLDAISDV-D-ASGSRQVTFEV 1156
                  68999999************865.5.56666666555 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00013
   TIGR01730   26 eaeiaaevaGkvtkisvkeGqkVkkGqlLakld 58  
                  + ++    +G+v  + vkeG++Vk+G++L+ l 
  MMETSP1174-20130828|1156_1 1189 KGSVGCSMPGVVVDVRVKEGNEVKAGEPLFILS 1221
                  556777889********************9985 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 5e-06
   TIGR01730  134 kteirAPfdGvigkrlvevgayvsagtelvtiq 166 
                  +t+i+AP++G++g++l+++g+ v+a++ l+ i+
  MMETSP1174-20130828|1156_1 1226 ETTIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  589***********************9998876 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.2e-09   3.3e-07     142     261 ..     793     912 ..     782     947 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.2e-09
   TIGR02090 142 flikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk.lpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGeraGnaaleevvialkvlygvdvkikteklyevsrlvskl 261
                 + ++   + +e g+  +++ d  G ltP + + l+ +l+e    +p+ vh h+  G  v   +a+  aGa  v+++++ +   +   +l  +++a +     d+ i ++ l  + r  + +
  MMETSP1174-20130828|1156_1 793 YYMDYAAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFPdVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQ-GGAHDTGISLKSLQPLNRYWEDV 912
                 5556666778999****************************988*********************************************99887765.45677888888887777776654 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.2e-09   9.3e-07      52     192 ..     143     285 ..     114     309 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.2e-09
   TIGR00877  52 dleevvefakkkkidlavigpEapLvlG..lvdaleeaGikvfGpkkeAaklEasKafakdllkkagipta..eyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekk..kfgeagekvviEefle 192
                 ++e+++++ak++++d +  g   +L++    + a  eaGi+ +Gp+ e     ++K+ a+++  +ag+     +  ++t+pe+a+e+++e+g p +++ka+   +GKg  vv+++e+ +   e + ++    fg+++    iE +++
  MMETSP1174-20130828|1156_1 143 NIENIIKVAKDNNVDAIHPGYG-FLSESpeFAAACAEAGITFVGPTVENLLSFSDKTKAREMAIAAGVAVVpgTDGAVTSPEQAEEFVDEFGLP-VIIKASMGGGGKGMRVVRNREDLVPFFESASSEAlaSFGDGS--CFIERYVD 285
                 6788888888888887777754.4544323788999*************9999**************99541145689***************9.99****999********9999877666655554311244444..67777665 PP

>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.3   6.7e-09     1e-06     151     242 ..     797     885 ..     756     900 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.7e-09
   TIGR00973 151 vveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGiGeraGnaaleevv 242
                      +e G+  + i d  G ++Pa  + l+++l+e+ P++    + vh+hd +G  v+  laa ++Ga+ v+++i+ +   +   +l  ++
  MMETSP1174-20130828|1156_1 797 YAAELVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFPDV---PIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAII 885
                 45567899*******************************85...79******************************9887777776666666 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.6e-08     4e-06      86     269 ..     195     390 ..     165     396 .. 0.74
   2 ?   -3.6   0.0         8   1.2e+03     125     155 ..    1228    1258 ..    1219    1259 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.6e-08
   TIGR00768  86 gdKllssalLakaglpl.p.ktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlke...kykvflvQeyikksggrdiRvfVvgd...evvaaiyr.ikseefrsNlarGgka..ekcelteeieelaikaakalgldvag.iDllesedkgllvlEvNasvef..knsekvtgvniA 269
                 +dK +   +  +ag+ + p   + ++s+e+a+++++e+g Pv++K  +G  Gk++  v++++ +    e+   ++       + ++  y++ +    i v +vgd   +vv   +r    ++    +   + a   ++el  + ++ a++ ++a + + ag + +l ++++   ++EvN+ ++   + +e+vtg+++ 
  MMETSP1174-20130828|1156_1 195 SDKTKAREMAIAAGVAVvPgTDGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEALasfGDGSCFIERYVDSPR--HIEVQIVGDgkgNVVHLWERdCSVQRRHQKVIEIAPAwnLPMELRLKLHDDAVRLTAANNYKNAGtVEFLVDKEGRHYFIEVNPRIQVehTVTEEVTGIDLV 390
                 66666655555555543241457789**************************************999887665553314457899******998..78888999744479999999855555555555545441156777788889999999999887665599999999999999***9765500567889999975 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 8
   TIGR00768  125 vvlKpvfGswGklvvlvedkqeaeklleale 155 
                  ++  p+ G  G++++   d+ ea +ll  +e
  MMETSP1174-20130828|1156_1 1228 TIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  4555899**********99999999998765 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.5e-08   3.7e-06     212     305 ..     195     296 ..     181     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.5e-08
   TIGR02068 212 sDkeltkklLkaaGvPvPeGt..vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees......seviverfikG.rdhrlLvvg 305
                 sDk  ++++  aaGv v  Gt   v s e+aee ++e G+Pv+ik   G  G+G+ + +++re+++  +e a+ e+       +  +er++   r+  + +vg
  MMETSP1174-20130828|1156_1 195 SDKTKAREMAIAAGVAVVPGTdgAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRV-VRNREDLVPFFESASSEAlasfgdGSCFIERYVDSpRHIEVQIVG 296
                 699999*********99888745799*****************************98.89**********999886554555567888888652344555555 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.3e-07     2e-05      66     266 ..     174     388 ..     168     396 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.3e-07
   TIGR02144  66 alleelGvkvinss.eviiacgdKvfttlkLakagvP.tPkt.ivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaealleh..kevlkgsqlklylvqEyinkpgRDiRvfviGd...eaiaaiyRvs....eewrtntArGgkaepvkvdeeveelavkaaeavg.gevvaiDivEskerGllvnEvndv..pEfKntvrvtgvn 266
                 a++ e+G++ + ++ e ++   dK  +     +agv  +P t + ++++e+a + ++e+G Pv++K  +G  G+ +  v++++++  + e    e+l  +     ++  y++ p R i v ++Gd   +++    R       + +    + +   p+++  ++++ av+ ++a + +++ +++ + +ke     +Evn+   +E+  t +vtg++
  MMETSP1174-20130828|1156_1 174 AACAEAGITFVGPTvENLLSFSDKTKAREMAIAAGVAvVPGTdGAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESasSEALASFGDGSCFIERYVDSP-RHIEVQIVGDgkgNVVHLWERDCsvqrRHQKVIEIAPAWNLPMELRLKLHDDAVRLTAANNyKNAGTVEFLVDKEGRHYFIEVNPRiqVEHTVTEEVTGID 388
                 555667777776542567777788777666666666425655367899*************************************999886226899999999*********99.99*******93222333334433331122222222334445555666666666666665551334556665555544445566664113555555666666 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   1.6e-07   2.4e-05     102     155 ..    1205    1258 ..    1197    1259 .. 0.96

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.6e-07
   TIGR00531  102 vevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155 
                  v+ G++vk g+ + i+ Amk+   i a  +g v  +l + g+ ve ++ L vie
  MMETSP1174-20130828|1156_1 1205 VKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  789***********************************************9998 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.7e-07   2.6e-05     120     201 ..     217     300 ..     152     393 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.7e-07
   TIGR01142 120 efadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargs..aerviveefidfdveitlltvravdg 201
                   ++s e+ ee v++ G+P+++k+ m+  GkG  vv++ ed+ + +e a ++a +s  ++   +e ++d    i + +v   +g
  MMETSP1174-20130828|1156_1 217 GAVTSPEQAEEFVDEFGLPVIIKASMGGGGKGMRVVRNREDLVPFFESASSEALASfgDGSCFIERYVDSPRHIEVQIVGDGKG 300
                 4578899999***************************************98876642267788899888777776666655544 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   8.3e-07   0.00013      17      78 ..    1198    1259 ..    1184    1260 .] 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 8.3e-07
   TIGR02927   17 GtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikaeeddtvevGgvlaiiGe 78  
                  G v     ++G+ v++ epl+ +s+ k++t i +p++G++ ++ a+  d ve    la+i e
  MMETSP1174-20130828|1156_1 1198 GVVVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIEE 1259
                  5555666678999*********************************************9987 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.1e-06   0.00017     163     229 ..    1192    1258 ..    1179    1260 .] 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-06
   TIGR01348  163 iGdaekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvle 229 
                  +G    + v++v vk G++v+a+ +l  l + k    + ap+sG+v ++  + Gd+v+  dl+ v+e
  MMETSP1174-20130828|1156_1 1192 VGCSMPGVVVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIE 1258
                  5555567788888999999999999999999998888999999999999999999998888877665 PP

>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.8e-06   0.00027     163     249 ..     801     887 ..     780     900 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
   TIGR00977 163 aekaGadwlvladtnGGtlpheieeitkkvkkrlkdpqlGihahndsetavansllaveaGavqvqGtinGlGercGnanlcslipn 249
                   + G++ l + d  G   p   + ++ ++++ + d  + +h+h+  ++ v+  l+a  aGa  v+G+i+ +   + +  l ++i  
  MMETSP1174-20130828|1156_1 801 LVEMGTHSLAIKDMAGLLTPAAATLLVSNLREAFPDVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAA 887
                 4578999999**************************99**********************************999999999999865 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       1.4   2.1e+02     153     197 ..      61     103 ..      46     125 .. 0.59
   2 !   15.7   0.1   9.6e-06    0.0015      17      76 ..    1200    1259 ..    1194    1260 .] 0.93

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.4
   TIGR01347 153 asaakeaaakaakaaenaatrseeRvkmtRlrqriaerLleakns 197
                 ++++++++ +a++++ n++t + +Rv m+  r++ia r++ a  +
  MMETSP1174-20130828|1156_1  61 ETETAQTE-NAEAHSYNYETAPFKRV-MAANRAEIAVRIMRAATE 103
                 22222222.22333334456666665.667777777777766554 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 9.6e-06
   TIGR01347   17 vaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaelee 76  
                  v++ + k G+ vk +e +  l   k++  ++++ +G++ ++l+++gd ve+++ la++ee
  MMETSP1174-20130828|1156_1 1200 VVDVRVKEGNEVKAGEPLFILSAMKMETTIKAPISGIVGRVLANTGDNVEADDLLAVIEE 1259
                  56667789**************************************************97 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.3e-05     0.008      52      83 ..    1198    1229 ..    1195    1233 .. 0.90
   2 ?   -0.1   0.0      0.49        75      46      72 ..    1229    1255 ..    1226    1259 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.3e-05
   TIGR01843   52 GivreIlVreGdrVkaGqvLveLdatsveada 83  
                  G+v  + V+eG++VkaG++L+ L a+++e  +
  MMETSP1174-20130828|1156_1 1198 GVVVDVRVKEGNEVKAGEPLFILSAMKMETTI 1229
                  89999*******************99988765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.49
   TIGR01843   46 vQhlegGivreIlVreGdrVkaGqvLv 72  
                  ++    Giv ++l + Gd+V+a ++L+
  MMETSP1174-20130828|1156_1 1229 IKAPISGIVGRVLANTGDNVEADDLLA 1255
                  444456777777777777777777776 PP

>> TIGR02291  rimK_rel_E_lig: alpha-L-glutamate ligase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.9e-05    0.0059      36      99 ..     195     257 ..     191     272 .. 0.81
   2 ?   -3.6   0.1         6   9.1e+02     155     225 ..     833     902 ..     830     909 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.9e-05
   TIGR02291  36 ddklktkelaiaaGia.vpelyGvietqkevksldeivkdhe.dfvikpaqGsGGdGilvitdrle 99 
                  dk k++e+aiaaG+a vp   G +   ++    +e+v+++    +ik + G GG+G+ v+ +r +
  MMETSP1174-20130828|1156_1 195 SDKTKAREMAIAAGVAvVPGTDGAVTSPEQA---EEFVDEFGlPVIIKASMGGGGKGMRVVRNRED 257
                 59************97369999999887765...56666765257899*************99987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 6
   TIGR02291 155 GvpdiriivlkGypvmamlrlptrasdGkanlhqGavGvGidlatGktlravwlnqpiekhpdtgksvsgl 225
                   pd+ i v     v a +     a+d  a++  Ga+ +   +++  +l a+        h dtg s+++l
  MMETSP1174-20130828|1156_1 833 AFPDVPIHVHTHDTVGAGVTSMLAAADAGADIVDGAIDAMSGMTSQPSLGAIIAATQGGAH-DTGISLKSL 902
                 5688888888888888888888888999999999998765555555555555444443333.666666555 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.014       2.2      67      94 ..    1198    1225 ..    1189    1231 .. 0.57
   2 ?    6.4   0.1    0.0051      0.78      59      91 ..    1227    1259 ..    1219    1260 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.014
   TIGR03794   67 GqvidlkvkvGdqvkkgdvvarieqpel 94  
                  G+v+d++vk+G+ vk+g+ + +++ +++
  MMETSP1174-20130828|1156_1 1198 GVVVDVRVKEGNEVKAGEPLFILSAMKM 1225
                  5666666666666666665555555444 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0051
   TIGR03794   59 vtiqskgsGqvidlkvkvGdqvkkgdvvarieq 91  
                  +ti+++ sG+v  +  ++Gd v++ d++a+ie+
  MMETSP1174-20130828|1156_1 1227 TTIKAPISGIVGRVLANTGDNVEADDLLAVIEE 1259
                  57999999********************99986 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.049       7.4      49      73 ..    1196    1220 ..    1186    1226 .. 0.59
   2 ?    6.3   0.0    0.0056      0.85     204     237 ..    1226    1258 ..    1221    1260 .] 0.83

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.049
   TIGR00998   49 vsGkvievlkddtdaVkqGdvLvkl 73  
                  + G v++v +++++ Vk+G+ L+ l
  MMETSP1174-20130828|1156_1 1196 MPGVVVDVRVKEGNEVKAGEPLFIL 1220
                  4455666666666666666655544 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0056
   TIGR00998  204 rteiraPvdGvvarrkvqvGqvvsagqplmalvp 237 
                  +t+i+aP++G+v r   + G+ v a   l+a+++
  MMETSP1174-20130828|1156_1 1226 ETTIKAPISGIVGRVLANTGDNVEAD-DLLAVIE 1258
                  599*******************9985.4667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.32u 0.38s 00:00:01.70 Elapsed: 00:00:01.27
# Mc/sec: 1309.50
//
Query:       MMETSP1174-20130828|1165_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 218.29
//
Query:       MMETSP1174-20130828|1169_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1339.21
//
Query:       MMETSP1174-20130828|1170_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.44
# Mc/sec: 1235.90
//
Query:       MMETSP1174-20130828|1173_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   17.1   0.0     0.0013   16.0   0.0    1.6  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
      0.032   11.4   0.0      0.047   10.8   0.0    1.2  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-07    0.0013     121     176 ..     215     271 ..     177     272 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.1e-07
   TIGR03516 121 qedlisGlrdglklmkegeevtfllPsykayGyyGded.kigsnlpikstvtllnik 176
                    l+ G+ +++  m+ege + f lP   +yG  G+    i +n+ +k ++ l +i+
  MMETSP1174-20130828|1173_1 215 CSRLFPGFDESVCSMREGEIAAFHLPPDYGYGEEGNASlGILPNTELKLKLELIHIE 271
                 5679*******************************98736999****9999998876 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.3e-05     0.047     148     202 ..      36      93 ..      19      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
   TIGR03533 148 vdavDised.aLevaeenieeyeledrveliqsdlf..ealegkkydlivsnPPYvda 202
                  d +D+s+   Le a++ i++ye e +++    d+f  ++ +g++yd+ v +PPY ++
  MMETSP1174-20130828|1173_1  36 TDSIDLSHVlKLERAKKEIDQYENEGDLQEEVHDVFilHTQHGQEYDFKVVDPPYCSS 93 
                 57889987426999***************999999943455799***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1260.72
//
Query:       MMETSP1174-20130828|1185_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-26   91.9   0.3    2.4e-14   51.1   0.0    3.1  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.8e-18   62.7  10.3    2.1e-09   34.9   0.0    3.2  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.1e-15   54.0   0.1    9.7e-10   35.3   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.6e-13   48.1   3.0    4.8e-06   24.2   0.0    3.0  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.3e-10   37.2   0.0    3.3e-10   37.2   0.0    2.3  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    4.2e-06   24.4   0.9    4.2e-06   24.4   0.6    3.0  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
        1.9    4.1  11.0        2.6    3.7   7.6    1.1  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   4.2         5   2.9e+03     310     371 ..      74     132 ..      49     174 .. 0.50
   2 !   51.1   0.0     4e-17   2.4e-14     206     294 ..     191     280 ..     176     289 .. 0.83
   3 !   47.1   0.1   6.6e-16   3.9e-13     208     297 ..     290     375 ..     280     402 .. 0.87

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 5
   TIGR01622 310 kfedsfdeseqsgldlnteereqldekldrddekgsgalaiagtdskavqmaklsrdglvak 371
                 +  d    +e ++++++t+e +  +e ++++ ++++ a +  +t+++     + ++ ++ ++
  MMETSP1174-20130828|1185_1  74 ETPD--TTEEPAAAEVETKEAASTEEPVAEETTETA-AEETTETATEETTETAAEETAAAEE 132
                 4444..345556666666666666666666655555.3333333332222222222222221 PP

  == domain 2    score: 51.1 bits;  conditional E-value: 4e-17
   TIGR01622 206 atelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqk....DpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvg 294
                 ++e+ +  +++ +  kLYvG+l  ++t ++L++ F  FG + +v l+k     p++   +G+GFi+F+  e a    ++lN   e+ GR+ikv 
  MMETSP1174-20130828|1185_1 191 TEEVAVAPRKTCGGNKLYVGGLDHSMTAEKLKEFFSTFGTVTDVLLPKsydmQPNA-TNRGFGFITFETVEIA---ETVLNTeHEIDGRPIKVN 280
                 455555556678999******************************98633114555.89********999876...57888889********96 PP

  == domain 3    score: 47.1 bits;  conditional E-value: 6.6e-16
   TIGR01622 208 elsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                 e   ++p+  ++++++vG+l  +  E++L+  F  FGe+++  + k+ etG s+G+GF+ F++ + a +Al +   + + G ++ v  a+
  MMETSP1174-20130828|1185_1 290 E---QQPTEESNRRVFVGDLTQS-KEEDLKAAFAIFGEVNDAVIVKNVETGESRGFGFVSFKEDGSAEKALAAEEPIMVSGQQVSVRKAQ 375
                 2...45777799********876.7999*********************************************99999***999998876 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.31   1.8e+02     527     527 ..     115     115 ..      13     193 .. 0.49
   2 !   34.9   0.0   3.6e-12   2.1e-09     282     362 ..     201     283 ..     178     299 .. 0.82
   3 !   30.0   3.1   1.1e-10   6.5e-08     288     364 ..     301     377 ..     283     505 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.31
   TIGR01628 527 a 527
                 a
  MMETSP1174-20130828|1185_1 115 A 115
                 0 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.6e-12
   TIGR01628 282 kaqgvNlYvkNlddtvddekLrelFeefGeitSakv....mldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAq 362
                    g+ lYv  ld +++ ekL+e F+ fG++t + +     ++++ + +gFGF++f + e A   +++ h   ++g+P+ v+  +
  MMETSP1174-20130828|1185_1 201 TCGGNKLYVGGLDHSMTAEKLKEFFSTFGTVTDVLLpksyDMQPNATNRGFGFITFETVEIAETVLNTEHE--IDGRPIKVNPPR 283
                 456889**************************9866222245678899**************999987664..888888887554 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 1.1e-10
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrk 364
                 ++v  l ++  +e+L+  F  fGe+  a ++ + e+++S+gFGFV+f++   A kA+   +  ++ g+ + v  Aq +
  MMETSP1174-20130828|1185_1 301 VFVGDLTQS-KEEDLKAAFAIFGEVNDAVIVKNvETGESRGFGFVSFKEDGSAEKALAAEEPIMVSGQQVSVRKAQPR 377
                 555555544.6899************9999999999********************9999999999998888888866 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.6e-07    0.0005     295     353 ..     203     264 ..     175     280 .. 0.82
   2 !   35.3   0.0   1.7e-12   9.7e-10     292     373 ..     294     374 ..     271     378 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.6e-07
   TIGR01642 295 sedklyignLPldlkddqvkeLLesFGdLkaFnliKdla...tGlsKGyaFceykdssvtdl 353
                 + +kly+g+L + ++ +++ke    FG +    l K  +   +  ++G++F+ ++   +++ 
  MMETSP1174-20130828|1185_1 203 GGNKLYVGGLDHSMTAEKLKEFFSTFGTVTDVLLPKSYDmqpNATNRGFGFITFETVEIAET 264
                 679*******************************997653236899********99988876 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 1.7e-12
   TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                 + +s+ ++++g+L +  k++ +k     FG++    ++K+++tG s+G++F+ +k+   ++ A+aa + i + ++++ v++A
  MMETSP1174-20130828|1185_1 294 TEESNRRVFVGDLTQS-KEEDLKAAFAIFGEVNDAVIVKNVETGESRGFGFVSFKEDGSAEKALAAEEPIMVSGQQVSVRKA 374
                 5688999******765.8999***********************************************************99 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.2      0.53   3.1e+02     163     256 ..      83     148 ..      61     170 .. 0.44
   2 !   22.3   0.0   3.1e-08   1.8e-05      88     148 ..     203     266 ..     193     275 .. 0.78
   3 !   24.2   0.0   8.1e-09   4.8e-06     272     335 ..     301     364 ..     286     385 .. 0.59

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.53
   TIGR01661 163 itvkfannPsssnskallsdleavlnaqltrvp.rstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavagl 256
                  +     + ++s+++ +  + +++ ++++t ++   t+ taa  +++++++++                              sp + d++ ++ 
  MMETSP1174-20130828|1185_1  83 AAAEVETKEAASTEEPVAEETTETAAEETTETAtEETTETAAEETAAAEETKE-----------------------------ESPATEDSMETST 148
                 33333333333333333333333333333322202222233333333333333.............................4444444443333 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.1e-08
   TIGR01661  88 kganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtd....lskGvGfirfdkreeadrai 148
                  g  lyv Gl  +mt ++l ++fs fG + t  +l ++         +G Gfi f+  e a++ +
  MMETSP1174-20130828|1185_1 203 GGNKLYVGGLDHSMTAEKLKEFFSTFGTV-TDVLLPKSYDMqpnaTNRGFGFITFETVEIAETVL 266
                 5788***********************86.55555443322344589********9988877655 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 8.1e-09
   TIGR01661 272 ifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytl 335
                 +fv +l+   +e +   f+ fG v++  i+++++t + +G+gfvs  +   a +a+++ +   +
  MMETSP1174-20130828|1185_1 301 VFVGDLTQSKEEDLKAAFAIFGEVNDAVIVKNVETGESRGFGFVSFKEDGSAEKALAAEEPIMV 364
                 5666666666666666666666666666666666666666666666665555555555443333 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   5.9         7   4.1e+03     295     351 ..     106     163 ..      73     201 .. 0.58
   2 !   37.2   0.0   5.5e-13   3.3e-10     110     277 ..     209     374 ..     204     378 .. 0.79

  Alignments for each domain:
  == domain 1    score: -6.2 bits;  conditional E-value: 7
   TIGR01645 295 aaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvs.sakkea 351
                 +aa  ++ +at   t + a  +aa+   +++spat  s  +++ e +a v+ sa+  a
  MMETSP1174-20130828|1185_1 106 TAAEETTETATEETTETAAEETAAAEETKEESPATEDSMETSTTEDPAAVAeSAEDSA 163
                 3333333344444333333344555556666666666655555555544431333222 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 5.5e-13
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinm..sWdpv.tqkhkgfafve.evPeaallaleqmng.allGGrnlkvgrPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGka 277
                 vG + + +  + l++ f+ fG +  + +  s+d       +gf f+  e  e a      +n+   + Gr +kv+ P+   q  +   +  ee+    r+ v  + +   eedlk+ f  fGe+ +  + ++  +++ +GfGf+ f++  s ++a+a+ +   + Gq + v ka
  MMETSP1174-20130828|1185_1 209 VGGLDHSMTAEKLKEFFSTFGTVTDVLLpkSYDMQpNATNRGFGFITfETVEIA---ETVLNTeHEIDGRPIKVNPPRRETQPNE--QQPTEESN--RRVfVGDLTQ-SKEEDLKAAFAIFGEVNDAVIVKNVETGESRGFGFVSFKEDGSAEKALAAEEPIMVSGQQVSVRKA 374
                 888999999999**********98865433888652456789999975555555...55555414699*******9998666544..44444433..3553777766.5799**********************************************9999999998888775 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0024       1.4     195     250 ..     206     264 ..     199     280 .. 0.78
   2 !   24.4   0.6   7.2e-09   4.2e-06     196     304 ..     301     408 ..     291     427 .. 0.71
   3 ?   -5.0   4.1       6.6   3.9e+03     281     330 ..     430     477 ..     421     492 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0024
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilr..d.kltgkprgvafvrfnkreeaqe 250
                  lyv  l  ++t ++l+  f  +g++ +  + +  d +   + rg  f+ f+  e a+ 
  MMETSP1174-20130828|1185_1 206 KLYVGGLDHSMTAEKLKEFFSTFGTVTDVLLPKsyDmQPNATNRGFGFITFETVEIAET 264
                 69**********************98764433311213356779999999998887765 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 7.2e-09
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeeh...gkakaahymsklglikygeygtgnggvag 304
                 ++v +l+++  +++l++ f  +g++ +  i+++  tg+ rg  fv f     a++a++a + ++  g  q ++vr a+     gk k++   s +g+ ++g+y++g gg+ g
  MMETSP1174-20130828|1185_1 301 VFVGDLTQS-KEEDLKAAFAIFGEVNDAVIVKNVETGESRGFGFVSFKEDGSAEKALAAEEPIMVSG--QQVSVRKAQPRypsGKGKGKGLNS-FGKGGKGGYAGGRGGGYG 408
                 567777776.467899999999999999999999*************99999999999999988776..778999987532336666665444.333334444444333322 PP

  == domain 3    score: -5.0 bits;  conditional E-value: 6.6
   TIGR01659 281 ahymsklglikygeygtgnggvag.gsaanlpqppafmgannmvhrgrqkk 330
                 + y  ++g   yg+ g+ + g+ g g + + +q++ +mg+++  +   q+ 
  MMETSP1174-20130828|1185_1 430 KGYGGQKG---YGGRGGQQWGGRGmGYGYPQQQQQQMMGYAQPAYGAPQQT 477
                 44555555...4444433333332033344455556677776655444433 PP

>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.6    0.0045       2.6      79     256 ..      20     201 ..       4     229 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0045
   TIGR00592  79 karikavriaalakkkkdrkkslgkDdlladilqelektekaekkikerlvsvlkkkfssa......akvvaindksnetaaavkkvkkaspvskrkllekilvpvplkraefaaedvqkeedeeeelasvaietlfedqedllesdesaadeekveetedviakk...kaaeseeeervveekkrk 256
                 + ++k++++a l+   +   ++l++D++ +d+   l +++++e+  k+ + s+ + +   +      a+v++ +  s e+++a++ ++ a +  +++   ++ +++  +    a e+ ++ + +e+ ++   +e++    e    +d  aa  e +e ++dv   +   ++ e+ ++e+v++   ++
  MMETSP1174-20130828|1185_1  20 PVSVKKMKVAELK--AALEERDLSTDGIKKDLTARLLDSIENEENGKPTEDSEATEETPDTteepaaAEVETKEAASTEEPVAEETTETAAEETTETA-TEETTETAAEETAAAEETKEESPATEDSMETSTTEDPAAVAE--SAEDSAAAKRERDEGDDDVPSAQrpkTDGEPSTTEEVAVAPRKT 201
                 5678888888888..66777899999999999888888777776666666555554433330000003333333344444444444444444444322.223333322333333333333344455555555555555444..23333445555555555775544111455666666666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.22s 00:00:01.00 Elapsed: 00:00:01.03
# Mc/sec: 662.51
//
Query:       MMETSP1174-20130828|1181_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 323.37
//
Query:       MMETSP1174-20130828|1186_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 203.98
//
Query:       MMETSP1174-20130828|1192_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|1194_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|1202_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    8.5  14.5        2.7    6.0   0.3    4.1  4  TIGR04073 exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
        6.6    4.2  12.2         14    3.1   1.5    2.7  2  TIGR01183 ntrB: nitrate ABC transporter, permease protein


Domain annotation for each model (and alignments):
>> TIGR04073  exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0013       2.7      28      49 ..      17      38 ..      11      44 .. 0.66
   2 ?    6.0   0.3    0.0013       2.8      25      46 ..      38      59 ..      34      68 .. 0.81
   3 ?    3.9   0.9    0.0058        12      30      47 ..      67      84 ..      53      96 .. 0.72
   4 ?    2.8   2.3     0.013        26      21      45 ..      70      94 ..      63     120 .] 0.54

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0013
   TIGR04073 28 tqeegaaagvtvGllkGvgmti 49
                +  +g a g+ vG+l+G++  i
  MMETSP1174-20130828|1202_1 17 GVFDGLAVGILVGVLDGLAVGI 38
                5566777777777777776554 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0013
   TIGR04073 25 vlttqeegaaagvtvGllkGvg 46
                +l+++ +g+  g+ vG ++G+ 
  MMETSP1174-20130828|1202_1 38 ILVGAFDGPTVGILVGAFDGFT 59
                5678889999999999999986 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0058
   TIGR04073 30 eegaaagvtvGllkGvgm 47
                 +g+  g+ vG ++G++ 
  MMETSP1174-20130828|1202_1 67 FDGPSVGILVGAFDGFAV 84
                577777888888888764 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.013
   TIGR04073 21 pkqivlttqeegaaagvtvGllkGv 45
                p   +l+++ +g a g  +G+ +G+
  MMETSP1174-20130828|1202_1 70 PSVGILVGAFDGFAVGKLIGISDGL 94
                3334444444444444444444444 PP

>> TIGR01183  ntrB: nitrate ABC transporter, permease protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   4.9     0.015        31      10      46 ..      17      54 ..       4      77 .. 0.74
   2 ?    3.1   1.5    0.0067        14      27      50 ..      71      94 ..      53     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.015
   TIGR01183 10 gtdkglflqilas.ltrvavgyllaaivgialgiligl 46
                g+  gl + il+  l+ +avg l+ a  g ++gil+g 
  MMETSP1174-20130828|1202_1 17 GVFDGLAVGILVGvLDGLAVGILVGAFDGPTVGILVGA 54
                55567777776642667788888888888888887775 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0067
   TIGR01183 27 avgyllaaivgialgiliglskll 50
                +vg l+ a  g a+g lig+s  l
  MMETSP1174-20130828|1202_1 71 SVGILVGAFDGFAVGKLIGISDGL 94
                688899999999999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 336.99
//
Query:       MMETSP1174-20130828|1203_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 928.48
//
Query:       MMETSP1174-20130828|1205_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   12.3   0.0       0.19    7.5   0.0    2.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   4.7e-05      0.19     130     151 ..      23      44 ..      12      82 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 4.7e-05
   TIGR00870 130 kgitalilAihkqnyeivklLl 151
                 +g t+l +A++ +n+ +v+ L 
  MMETSP1174-20130828|1205_1  23 NGRTPLYVAAQMDNLAVVRYLA 44 
                 6777777777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 315.31
//
Query:       MMETSP1174-20130828|1206_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|1207_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 162.68
//
Query:       MMETSP1174-20130828|1210_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|1212_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 806.60
//
Query:       MMETSP1174-20130828|1216_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052    9.0  12.1      0.052    9.0   8.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.24    6.8  12.3       0.24    6.8   8.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.55    6.5  10.8       0.54    6.5   7.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        4.9    4.9  13.2        5.5    4.7   9.2    1.0  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.4   5.1e-05     0.052     233     290 ..       6      63 ..       1      65 [] 0.60

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5.1e-05
   TIGR02168 233 rleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkel 290
                 + ee+k++  e+e++l+++e++++e+e++l+e+++++ee +++++e+e++l+e+++++
  MMETSP1174-20130828|1216_1   6 KTEEEKKKEIEMEKQLSDLETTHKEKEKALAEYDAKYEENEKAFEEKEKALAEYDAKY 63 
                 3455555555666666666666666666666666666666666666666666666655 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.6   0.00023      0.24     871     926 ..       7      62 ..       1      65 [] 0.44

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00023
   TIGR02169 871 leeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkak 926
                  ee ++++ e+e++l+dL+   +e e+ l e   k+ee e + e+k+k l+e  ak
  MMETSP1174-20130828|1216_1   7 TEEEKKKEIEMEKQLSDLETTHKEKEKALAEYDAKYEENEKAFEEKEKALAEYDAK 62 
                 34444444444444444444444444444444444444444444444444444443 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.5   0.00053      0.54      66     116 ..       8      59 ..       1      65 [] 0.51

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00053
   TIGR03319  66 elek.elkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleek 116
                 e ek +  e++k+l++le+  k+ke++l++ ++k e++e+++e+kek+l+e 
  MMETSP1174-20130828|1216_1   8 EEEKkKEIEMEKQLSDLETTHKEKEKALAEYDAKYEENEKAFEEKEKALAEY 59 
                 2222022244555666666666666666666666666666666666666554 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.2    0.0053       5.5      27      77 ..       6      56 ..       2      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0053
   TIGR03927 27 kpnryekkdiEkntellqgeetelekelftpeeqkkikkkkkkekkeqeel 77
                k+ +  kk+iE +++l   e t  eke+ ++e + k ++++k+ +++++ l
  MMETSP1174-20130828|1216_1  6 KTEEEKKKEIEMEKQLSDLETTHKEKEKALAEYDAKYEENEKAFEEKEKAL 56
                788999**********9999999999********99999999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       388  (0.094588); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 238.31
//
Query:       MMETSP1174-20130828|1217_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1174-20130828|1225_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1262.15
//
Query:       MMETSP1174-20130828|1226_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|1229_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 152.83
//
Query:       MMETSP1174-20130828|1231_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|1232_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|1238_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1174-20130828|1240_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 640.15
//
Query:       MMETSP1174-20130828|1241_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|1243_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1019.50
//
Query:       MMETSP1174-20130828|1248_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-63  210.1   2.0    6.4e-63  210.0   1.4    1.0  1  TIGR00235 udk: uridine kinase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   1.4   1.6e-66   6.4e-63      26     202 ..       2     177 ..       1     182 [. 0.97

  Alignments for each domain:
  == domain 1    score: 210.0 bits;  conditional E-value: 1.6e-66
   TIGR00235  26 ivellkkekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDliiPeggknevainllkaki 202
                 i++ l +++i+ +s+DnyYkd s ++l++r + nfDhPdald+dl++eh+ +Lk+g ++ +P Yd+  h+r++ +v+v+p kv+++eGil+++ e+lrd +d+kifvdt  dirlirrlerD+eer rs +sv++qy+k+vrpm++ fvep+k +a++i+P g  n+va++l+  ++
  MMETSP1174-20130828|1248_1   2 IRQGLPESEIAYLSHDNYYKDISGQSLEKRASHNFDHPDALDTDLMYEHVMKLKDGIEISMPTYDFGTHKRMETSVRVQPCKVILVEGILIFTHEKLRDAMDVKIFVDTADDIRLIRRLERDMEERKRSAESVVNQYKKTVRPMHKLFVEPSKVHANVIVPVG-LNDVALDLIVSRL 177
                 67889999*********************************************************************************************************************************************************86.699****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 619.33
//
Query:       MMETSP1174-20130828|1251_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 796.33
//
Query:       MMETSP1174-20130828|1257_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.4   0.1      0.084   11.1   0.0    1.6  2  TIGR00829 FRU: PTS system, Fru family, IIB component


Domain annotation for each model (and alignments):
>> TIGR00829  FRU: PTS system, Fru family, IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.1   4.2e+02      29      45 ..       2      18 ..       1      24 [. 0.80
   2 ?   11.1   0.0     2e-05     0.084      19      46 ..      28      55 ..      18      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.1
   TIGR00829 29 levkvetqGsvGaenal 45
                ++ k   qG+  a+n+l
  MMETSP1174-20130828|1257_1  2 WYTKAADQGHALAQNNL 18
                77788889998888887 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2e-05
   TIGR00829 19 alekaakkkglevkvetqGsvGaenalt 46
                 l+++ ++ +++ k   qG  Ga+n+l 
  MMETSP1174-20130828|1257_1 28 VLQDYLRAVEWYTKAAAQGDAGAQNNLG 55
                5889999******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 200.98
//
Query:       MMETSP1174-20130828|1258_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|1261_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 168.82
//
Query:       MMETSP1174-20130828|1262_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-05   20.0   0.0      7e-05   19.9   0.0    1.0  1  TIGR03907 QH_beta: quinohemoprotein amine dehydrogenase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03907  QH_beta: quinohemoprotein amine dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-08     7e-05     267     320 ..       6      59 ..       2      60 .] 0.91

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.7e-08
   TIGR03907 267 kyDikqkkllkavdLehtyYavavssdgkklylgGtlndiavydaeslekvgei 320
                  yD+ ++k l  ++ e +  ava+ sdg++  +gG  ++ ++yd++s + ++ i
  MMETSP1174-20130828|1262_1   6 IYDTSSGKALTTIEREGSVMAVAFTSDGSRCLVGGYDKKAVIYDTSSGKALTTI 59 
                 59*******************************************998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.24s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|1271_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.8    3.9  18.0        5.9    3.8  12.5    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  12.5    0.0014       5.9     114     239 ..       6      72 ..       1      81 [] 0.41

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0014
   TIGR02794 114 aeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa..e.eakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeae 239
                                                                          ++akk a+   e ea+ k+ +e  K++ e   K     ak  +e eA  K+++e k+K e+++k +  ++ e
  MMETSP1174-20130828|1271_1   6 Y--------------------------------------------------------EQAKKTADLtrEgEATIKRREEN-KDAYEWYSKY----AKLTKEGEATIKRREENKSKYEQAKKTA-DLTRE 72 
                 2........................................................44444444443344555555554.4555554444....3444444444455555555555444422.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|1276_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 151.54
//
Query:       MMETSP1174-20130828|1278_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|1280_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 423.14
//
Query:       MMETSP1174-20130828|1283_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|1289_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|1290_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.54
# Mc/sec: 1532.54
//
Query:       MMETSP1174-20130828|1294_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 1386.79
//
Query:       MMETSP1174-20130828|1297_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.24s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 337.74
//
Query:       MMETSP1174-20130828|1298_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 829.65
//
Query:       MMETSP1174-20130828|1304_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|1305_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|1306_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.24s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 170.99
//
Query:       MMETSP1174-20130828|1307_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|1309_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 142.99
//
Query:       MMETSP1174-20130828|1316_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 202.20
//
Query:       MMETSP1174-20130828|1314_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1260.63
//
Query:       MMETSP1174-20130828|1330_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|1332_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   48.0   0.0    2.4e-13   47.8   0.0    1.1  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    4.4e-09   33.9   0.0    5.1e-09   33.7   0.0    1.1  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
     0.0075   13.4   0.0     0.0082   13.2   0.0    1.1  1  TIGR01921 DAP-DH: diaminopimelate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.7e-16   2.4e-13       3      61 ..      38      94 ..      36      95 .] 0.93

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 1.7e-16
   TIGR01534  3 ginGfGRiGrlvlrallekkskdlevvaindltdleklayllkyDsvhGrfeeevtvse 61
                ginGfGRiGrlv+r+++++   + e+  in  + +e++ay +kyDs+hG++++ v+v+ 
  MMETSP1174-20130828|1332_1 38 GINGFGRIGRLVARIMVKN--PETELKLINSGAAAEYMAYQFKYDSIHGKYDGVVEVDG 94
                8**************9999..569999*************************9999875 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   3.7e-12   5.1e-09       3      63 ..      38      95 .]      36      95 .] 0.90

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 3.7e-12
   TIGR01532  3 aingfgrigrnvlralyesgkraeievvalneladaaavayllkydtshgrfakevkvdrd 63
                 ingfgrigr v r + ++++    e+  +n  a a+ +ay  kyd+ hg++ + v+vd+d
  MMETSP1174-20130828|1332_1 38 GINGFGRIGRLVARIMVKNPET---ELKLINSGAAAEYMAYQFKYDSIHGKYDGVVEVDGD 95
                59*************9988864...56679************************9999976 PP

>> TIGR01921  DAP-DH: diaminopimelate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     6e-06    0.0082       1      40 [.      32      71 ..      32      88 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6e-06
   TIGR01921  1 mskiraaivGyGnlGksvekaisqaPdlelvgvfsrrdae 40
                m++   +i G+G +G+ v ++++++P+ el  + s + ae
  MMETSP1174-20130828|1332_1 32 MEATPCGINGFGRIGRLVARIMVKNPETELKLINSGAAAE 71
                5666789***********************9887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|1334_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|1339_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.6   1.0      0.031   12.7   0.7    1.4  1  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
      0.023   12.1   0.1      0.028   11.8   0.0    1.1  1  TIGR00025 Mtu_efflux: ABC transporter efflux protein, DrrB family


Domain annotation for each model (and alignments):
>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   1.5e-05     0.031      33      54 ..       2      23 ..       1      25 [. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
   TIGR02419 33 lvCeeCgepIPeaRrealPgvt 54
                 +C+ C+e+IPe  r +l g++
  MMETSP1174-20130828|1339_1  2 TWCKMCDEKIPEDGRHMLCGCR 23
                58**************999996 PP

>> TIGR00025  Mtu_efflux: ABC transporter efflux protein, DrrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.4e-05     0.028     191     235 ..      48      90 ..      41      93 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   TIGR00025 191 yaveALrqlaadsektasavsmigtlvvvlavvvvlavlaaitlr 235
                  +veAL+q+ ++s++t+    m g lv vl+ + ++ +   i + 
  MMETSP1174-20130828|1339_1  48 RMVEALHQVVGNSQDTFL--DMTGGLVGVLSAWDAVTARIPILWT 90 
                 589**************9..899**********999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 587.12
//
Query:       MMETSP1174-20130828|1337_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1024.65
//
Query:       MMETSP1174-20130828|1340_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|1344_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|1343_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 730.65
//
Query:       MMETSP1174-20130828|1346_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|1347_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1174-20130828|1350_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|1353_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 259.85
//
Query:       MMETSP1174-20130828|1355_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 403.51
//
Query:       MMETSP1174-20130828|1357_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1174-20130828|1358_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|1360_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1174-20130828|1361_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       563  (0.13725); expected 82.0 (0.02)
Passed bias filter:                      317  (0.0772794); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.26s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 620.71
//
Query:       MMETSP1174-20130828|1362_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1201.56
//
Query:       MMETSP1174-20130828|1363_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    3.1   9.0        2.6    3.3   6.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.2   0.00063       2.6     967     994 ..      59      82 ..       3      85 .] 0.50

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.00063
   TIGR00927 967 geggsdGGdseeeeeeeeeeeeeeeeee 994
                 +e      +seee e+eee+++eee e+
  MMETSP1174-20130828|1363_1  59 DEFV----ESEEEYEKEEEDNDEEEYEK 82 
                 3322....23333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|1364_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 249.71
//
Query:       MMETSP1174-20130828|1366_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 221.74
//
Query:       MMETSP1174-20130828|1365_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   0.1     0.0027   14.8   0.1    1.4  1  TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family
     0.0026   14.1   0.0     0.0044   13.4   0.0    1.2  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR01728  SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.3e-06    0.0027      39     122 ..     102     185 ..      95     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-06
   TIGR01728  39 agpaeleaLaagslDigyiGpgpalnayaaG.adikavglasnnpkataivvkkdsgIksvkdLKGKriAvpkggsahdlllraL 122
                 +  a++eaL ag+ Di+ iG+  + ++ a   ad + v + +n+ ++ + ++ +++++   +d + K+ A+ +g+  + +l + +
  MMETSP1174-20130828|1365_1 102 GTKAFMEALTAGA-DISMIGQFGVGFYSAYLvADEVEVTSKNNEDEQHTWKSSAGGAFTVTQDVDDKKLAIGRGTRIKLTLKEDM 185
                 56789*******8.*******987777777689******************************************9998887655 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.1e-06    0.0044      59     118 ..     383     442 ..     378     447 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.1e-06
   TIGR03377  59 areCieenkilkkiakhcveetgGlFiklpeDdleyqkkfleaceeagieaeeldpeeal 118
                  re ++ nkil+ i k+ v +   lF +l eD+++y+k + + +++ ++ ++e ++++a+
  MMETSP1174-20130828|1365_1 383 SRETLQQNKILRVIKKNLVKKSIELFNELAEDEEKYKKFYEAFAKNLKLGIHEDSTNRAK 442
                 6999*********************************99999999999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.60
# Mc/sec: 1570.67
//
Query:       MMETSP1174-20130828|1367_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|1370_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 869.71
//
Query:       MMETSP1174-20130828|1371_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 183.98
//
Query:       MMETSP1174-20130828|1376_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 550.58
//
Query:       MMETSP1174-20130828|1374_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-102  339.4   0.0   3.1e-102  339.0   0.0    1.1  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
      3e-17   60.5   0.0    7.3e-11   39.7   0.1    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    3.5e-08   30.9   0.0    2.6e-07   28.1   0.0    1.9  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00076   17.2   0.0     0.0018   16.0   0.0    1.7  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.0   0.0    3e-105  3.1e-102       2     245 .]      34     286 .]      33     286 .] 0.96

  Alignments for each domain:
  == domain 1    score: 339.0 bits;  conditional E-value: 3e-105
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpvkk.........kylgdeeavaaaaeavanqGk 245
                  +vl+rhGes Wn+en ftGW+d+els+kG++ea+e+g  l++e+++fd+a+ts l+rai+t+  +l ++d lw+p  k+W lnerhyGalqG+dk+et++ yG++qv +wrrs+d++Pp +d+++e++p ++++ya+++ + lP +e+lk t ervlPywe +i+pe+ sgk+vli+ahGnslralv hl+++s e+i  lniPt+ Plvyeld++++p+ +         +y+gd+ea++a+ e v nq k
  MMETSP1174-20130828|1374_1  34 TVVLMRHGESVWNQENIFTGWYDIELSQKGVDEAAEGGAQLADEGFTFDIAFTSYLQRAIHTCYAALGKTDCLWIPTIKAWELNERHYGALQGMDKQETVDTYGKDQVLVWRRSYDTKPPAVDAESEHHPINEAKYAAISPDLLPAAECLKTTKERVLPYWESNIVPEIASGKNVLIAAHGNSLRALVMHLDNISPEDITGLNIPTATPLVYELDDNMQPIPHpdaiapltgRYVGDQEAIRARIEGVKNQTK 286
                 68************************************************************************************************************************************************************************************************************************98754344444433799*************99976 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   7.1e-14   7.3e-11       1     107 [.      35     149 ..      35     164 .. 0.83
   2 !   19.0   0.0   1.6e-07   0.00017     111     170 ..     177     239 ..     159     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 7.1e-14
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAellaeklkl...piekddrLrEmdfGdwEgksydeisekyp..eldawakdla 107
                 ++L+RHge  +n+++ + G  D++L++kg  +aa+  ++l  e  +fd  ++S l+R+ ++  +   k+++   p+ k  +L+E ++G+ +g++ +e +++y   ++  w +++ 
  MMETSP1174-20130828|1374_1  35 VVLMRHGESVWNQENIFtGWYDIELSQKGVDEAAEGGAQLadEGFTFDIAFTSYLQRAIHTCYAALGKTDClwiPTIKAWELNERHYGALQGMDKQETVDTYGkdQVLVWRRSYD 149
                 78*************************************9666789999**********998776655554111457888*******************9998755666665554 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.6e-07
   TIGR03162 111 vpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsievey 170
                 +p  E +++ ++Rv   +e+ +     +++nvli +Hg  +ral++hl +++ e+++ +++++
  MMETSP1174-20130828|1374_1 177 LPAAECLKTTKERVLPYWESNIVPeiaSGKNVLIAAHGNSLRALVMHLDNISPEDITGLNIPT 239
                 6889**************97665548899***********************99998887766 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.5e-10   2.6e-07       1      94 [.      34     131 ..      34     141 .. 0.86
   2 ?    0.5   0.0     0.072        74     112     170 ..     176     226 ..     160     252 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.5e-10
   TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerlad..lpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelke 94 
                 tv+l+rhg s  n +++++G+ + +eL+++G + aa+  ++lad   + +   +s l+r+ +t  a + ++    +++    +l+e +YG  +G + +e
  MMETSP1174-20130828|1374_1  34 TVVLMRHGESVWNQENIFTGWYD-IELSQKGVDEAAEGGAQLADegFTFDIAFTSYLQRAIHTCYAALGKTdclWIPTIKAWELNERHYGALQGMDKQE 131
                 89*******************97.******************97446788899**********99988887543345556779**********987665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.072
   TIGR03848 112 vfPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlDl 170
                   P  e l++++ r+      ++ ++  e  +++  ++ +hg+ +++++     +hlD+
  MMETSP1174-20130828|1374_1 176 LLPAAECLKTTKERVL---PYWESNIVPEIASGKNVLIAAHGNSLRALV-----MHLDN 226
                 5677788887777764...567778888888888888899999888655.....77774 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.7e-06    0.0018       3      60 ..      35      96 ..      33     143 .. 0.86
   2 ?   -2.7   0.0         1     1e+03     100     123 ..     206     229 ..     200     242 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.7e-06
   TIGR00249  3 lylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqta 60
                + lmrHGe   +++       + +L++kG+dea   ++ L ++g  +d  ++S l RA  t 
  MMETSP1174-20130828|1374_1 35 VVLMRHGESVWNQEniftGWYDIELSQKGVDEAAEGGAQLADEGFTFDIAFTSYLQRAIHTC 96
                679****99765543765567899**********************************9986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
   TIGR00249 100 ksvllvsHlPllgelvaeLlsgnP 123
                 k vl+ +H   l  lv  L   +P
  MMETSP1174-20130828|1374_1 206 KNVLIAAHGNSLRALVMHLDNISP 229
                 678888888888888888877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.67
# Mc/sec: 563.42
//
Query:       MMETSP1174-20130828|1375_1  [L=880]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-82  276.5   3.2    1.5e-82  276.0   2.2    1.1  1  TIGR02412 pepN_strep_liv: aminopeptidase N
    2.2e-46  156.3   0.0      3e-46  155.8   0.0    1.1  1  TIGR02414 pepN_proteo: aminopeptidase N
    1.5e-26   91.1   0.0    3.1e-26   90.1   0.0    1.4  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.0   2.2   1.1e-85   1.5e-82      38     451 ..      36     466 ..      14     495 .. 0.82

  Alignments for each domain:
  == domain 1    score: 276.0 bits;  conditional E-value: 1.1e-85
   TIGR02412  38 stvrvrlsetgaetfvdllaaeiesvtl....nG...e.ldvapvvdgsriaL...egLetgenvlrveaklaytntGeGlHr..fvDPvDgevYl.ytqfevadarrvfavFdqPDlKAsfelsvkaPedWtVisnsteee..vtteeadrvwefeetPklstYltavaaGPyvsvq.keaesiplgiyaRkSlaeyldada..ifditrqgldfyeekFgipyPfkkYDqvfvPefnaGAmENaGlVtfaee..fvfraevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaDqlpttHPivadvadledalsnfDgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlidsLakasgrdlsaWskaWLetaGvdvlkael 451
                 + + v++   +ae  + +++  +  +t     +G   + ++++ +++++ ++L   e+L  g+ vl++++  + +n+  G+ r  +vD +  + ++  tqfe+ darr f ++d P  KA+f+l++++ ++ + +sn       +  + ++++ +f  tPk+stYl+    G +  v    + ++  ++y+         a+    +d+  + ldfy+  F +pyP  k D + + +f +GAmEN GlVt++e    +   ++ ++++++ a vi HElAH+WFG+lVtm WWddlWLnE FA++ ++la+         Wt+f+ + +a a + D l t+HPi++++++ e++ + fD+i+Y KGASv+k + a +G e+F +g++ y+ r+++gn++  Dl ++ ++ s++ +s+   +W e  G   ++   
  MMETSP1174-20130828|1375_1  36 EKISVDVVSATAEIQLHAKDLYVSAATFapegDGasaDaIEINMHLKDTVLTLrfaEALPVGKGVLKITFRGDINNQMAGFYRsqYVDAAGKKKWMgSTQFEALDARRAFPCWDEPSRKATFALTLTIASECEALSNMPVAAsaTIADGKQKRVTFFPTPKMSTYLVCWCIGEFDAVAgLTQGGVMCKVYTPP----GRGAQGrfALDVAIKTLDFYDDFFRVPYPLPKLDMIAIMDFAMGAMENWGLVTYREVdlLIDEEKASSQQRQRVASVITHELAHQWFGNLVTMAWWDDLWLNEGFASWTQTLAADFIFPDWSLWTQFVCDDQAAALRLDALKTSHPIQVPIKRAEEVEEVFDAISYCKGASVIKMIHAVLGREHFQSGLQLYMDRHQYGNTETFDLWRAWEEVSQKPISKMMGSWTEQMGFPLVEVSS 466
                 444444444444444444444444444322222221123677777888888873334688889999999988888888888864478999999888469**************************************965543366789999***********************998444455555666555....4444444489*********************************************9765677888999999********************************************99999************************************************************************************************************9988776554 PP

>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   2.2e-49     3e-46      95     493 ..     108     515 ..      44     547 .. 0.83

  Alignments for each domain:
  == domain 1    score: 155.8 bits;  conditional E-value: 2.2e-49
   TIGR02414  95 eentsLeGLYksg.......g..lfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvlLsnGnkieseeledgrhlaeweDPfkkPs.YLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvddFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsra.vkRiedvkllravqFaEDagplaHPvr.P.esyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledasgkdleqfk.rWysqaGtPelevkeeydaekkeytltlkqstpptpgqk..ekkplhiPlavglldaegkklel 493
                 + n+++ G Y+s+       +  + +tq Ea   Rr     D P   +++  t++ + +     Lsn    +s+++ dg+++     P +k s YL     G+++++     t+ g  v  +vy+ +++  + +fal+   k++ + ++ f   y L ++ ++A+ dF mGAmEn gL  + +  +L d+e a  ++ +r+ svi+HE  H w Gn vt+  W  l l EG+  +  q ++ad          + v   +a+  + Da  ++HP++ P +  +e++  + a  Y kGa vi+m++++lG+e+f+ g++lY++rh    + + d+ +a e++s+k +++ +  W +q G P +ev+++  +e++++tltl+q+    +g +  e k  +iPl + + ++  +++ +
  MMETSP1174-20130828|1375_1 108 DINNQMAGFYRSQyvdaagkKkwMGSTQFEALDARRAFPCWDEPSRKATFALTLTIASE--CEALSNMPVAASATIADGKQKRVTFFPTPKMStYLVCWCIGEFDAVAG--LTQGG--VMCKVYTPPGRGAQGRFALDVAIKTLDFYDDFFRVPYPLPKLDMIAIMDFAMGAMENWGLVTYREVDLLIDEEKASSQQRQRVASVITHELAHQWFGNLVTMAWWDDLWLNEGFASWT-QTLAADFIFPDwSLWTQFVCDDQAAALRLDALKTSHPIQvPiKRAEEVEEVFDAISYCKGASVIKMIHAVLGREHFQSGLQLYMDRHQYGNTETFDLWRAWEEVSQKPISKMMgSWTEQMGFPLVEVSSSSTDEDDSVTLTLTQKWFLGDGSEgdEAKLWTIPLLMVVQGQPVSEEVT 515
                 568888888888522222211224579**********99**************998855..4569**************877666678887644**********99976..46655..999****************************************************************************************************************996.66777776554044455566667888999********9854467899****************************************855555568999********98776538*****************************9876655431155567899988776655544333 PP

>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.2e-29   3.1e-26      11     414 ..      14     435 ..      10     484 .. 0.77

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 2.2e-29
   TIGR02411  11 vkvkktelnlkvdfdkkklaGsvtyklkskeenkeklvLdtsyleikevting...lkadfeieerkealGsklkislpsetsknkelelkieyettdkctaLqflepe..qtkGkkaPylfsqcqaiharsllPcfdtPsvkstyda..kvesp......lavllsglrketskdegkylfkqkvPiPayLvalasGdLas....apiGprssvysekvelekcqyefekdtekflkvaeelifpyvWkkydllvlppsfPyGGmenPn.ltfatPtLi.......agdrsn.vdviahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvktlkkdpeytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqfk 414
                 v+ +  +++++ d ++ + +G+   ++ + +++ e + L +++l ++ +t        +  +ie   + +   l++  +++++ + + +lki+++   +     f +++  +++Gkk+    +q +a+ ar  +Pc d Ps k t+ +  ++ s+      ++v +s+ + +   ++++++f     + +yLv+  +G++++    ++ G   +vy+ + +  + ++ ++  ++++    + + +py   k d++     f  G men   +t+    L+       ++ r++ + vi helah W GnLvt   w+ +WLneGf+ + +      ++ + +   + + + ++    +++lk  +     +   +  + ++ f ++ y kG +++ ++  +lG +++f++ l+ y+ +++y   +t++  
  MMETSP1174-20130828|1375_1  14 VEPSAYDIDISTDLERFTFSGTEKISVDVVSATAE-IQLHAKDLYVSAATFAPegdGASADAIEINMHLKDTVLTLRFAEALPVG-KGVLKITFRGDINNQMAGFYRSQyvDAAGKKKWMGSTQFEALDARRAFPCWDEPSRKATFALtlTIASEcealsnMPVAASATIAD--GKQKRVTFFPTPKMSTYLVCWCIGEFDAvaglTQGGVMCKVYTPPGRGAQGRFALDVAIKTLDFYDDFFRVPYPLPKLDMIA-IMDFAMGAMENWGlVTYREVDLLideekasSQQRQRvASVITHELAHQWFGNLVTMAWWDDLWLNEGFASWTQTLAADFIFPDWSLWTQFVCDDQAAALRLDALKTSHPIQVPIKRAE--EVEEVFDAISYCKGASVIKMIHAVLG-REHFQSGLQLYMDRHQYGNTETFDLW 435
                 55667788999999999999999999988876655.9*********999986433333345777788888899999999999999.56799999987666666666554226789987666779********************9966115666533433344444544443..3334444545556889*********9874333567999********9999998888666665555566789********865.567********7626888766652333322233443257********************************99999999999988888888887777777888886666555444433..6789********************99.9*****************99998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.84
# Mc/sec: 1382.74
//
Query:       MMETSP1174-20130828|1377_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   25.9   0.0    1.7e-06   25.3   0.0    1.2  1  TIGR03450 mycothiol_INO1: inositol 1-phosphate synthase
  ------ inclusion threshold ------
      0.023   12.3   0.1        2.6    5.6   0.0    2.5  2  TIGR00295 TIGR00295: TIGR00295 family protein


Domain annotation for each model (and alignments):
>> TIGR03450  mycothiol_INO1: inositol 1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   8.1e-10   1.7e-06     131     318 ..     253     439 ..     230     477 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 8.1e-10
   TIGR03450 131 lpvgseea..dkfyaqcaidagvafvnalp..vfiasdpewakkftdagvpivgddiksqvgatithrvlaklfeergvrlertmqlnvggnmdfknmlerdrleskkisktqavtsnlpdrelagkvedknvhigpsdyvewlddrkwayvrlegrafgdvplnleyklevwdspnsagviidavraakia 318
                 +  g ee   + ++a ++i   ++++n  p   f+ +  e a++     v i gdd ks  g t  + v+  ++   g++    +  n  gn d kn+     + sk isk++ v   ++ + +  + +++  h+    yv ++ d k a      + f +    +  +    ds  +  +i+d v  a ++
  MMETSP1174-20130828|1377_1 253 IARGEEEVspSTIFAVACILEHTTYINGSPqnTFVPGVVELAER---ESVMIAGDDFKS--GQTKMKSVMVDFLVSAGIKPTSIVSWNHLGNNDGKNLTAPATFRSKEISKSNVVDDMVASNRILFEENEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGRNTIAMHNTCEDSLLAVPLILDLVILAELC 439
                 55566665224677888888888899988744588888888775...5799*******9..899*******************************************************99999999999999****************9998888888777777777777777777777777777666544 PP

>> TIGR00295  TIGR00295: TIGR00295 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0013       2.6     104     146 ..     177     219 ..     171     246 .. 0.77
   2 ?    4.1   0.0    0.0037       7.6      99     138 ..     495     532 ..     488     535 .] 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0013
   TIGR00295 104 PkdylPetleekivafadnlilGvkeveidevikkleerlgkn 146
                 P  y+P  +       adn+++G+k+ ++d++ + + e + +n
  MMETSP1174-20130828|1377_1 177 PSIYFPDFIAANQADRADNVLTGTKQQQLDKIRQDIREFKAAN 219
                 7778999999999999***************988888877776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0037
   TIGR00295  99 klGliPkdylPetleekivafadnlilGvkeveidevikk 138
                  +Gl+P++ +   le k+ ++ d++    ++++i+   k+
  MMETSP1174-20130828|1377_1 495 SMGLPPENNM--NLEHKLGSHIDEMQKRIEDSTIQPARKR 532
                 68******99..69**********9999999988876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 1238.85
//
Query:       MMETSP1174-20130828|1379_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1240.70
//
Query:       MMETSP1174-20130828|1381_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1174-20130828|1382_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1174-20130828|1384_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.25s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 1268.04
//
Query:       MMETSP1174-20130828|1385_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 917.16
//
Query:       MMETSP1174-20130828|1386_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1091.11
//
Query:       MMETSP1174-20130828|1388_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|1389_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-10   36.8   0.0    2.1e-05   22.5   0.0    2.2  2  TIGR01068 thioredoxin: thioredoxin
    6.7e-07   27.4   0.0    0.00049   18.2   0.0    2.3  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.5e-06   25.8   0.0    1.7e-06   25.6   0.0    1.1  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    6.8e-05   20.4   0.0      0.037   11.4   0.0    2.1  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.013   13.9   0.0        3.9    5.9   0.0    2.3  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.5e-08   2.1e-05      12      53 ..      44      85 ..      36     103 .. 0.69
   2 !   12.5   0.0   3.3e-05     0.027      56      77 ..     114     135 ..      95     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.5e-08
   TIGR01068 12 ssdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKln 53
                 +++++++ f A+WC pC+  +P l ++ +   +k + v + 
  MMETSP1174-20130828|1389_1 44 GGKTNIMIYFSAHWCPPCRGYTPQLSDAYSASGKKEETVVVF 85
                45679********************98765444333333222 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.3e-05
   TIGR01068  56 eeqeiaakygirsiPtlllfkn 77 
                  ++++++kyg+r iPtl+l+  
  MMETSP1174-20130828|1389_1 114 RKEALSQKYGVRGIPTLVLLDG 135
                 567899************9974 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     6e-07   0.00049      10      72 ..      43     104 ..      36     119 .. 0.68
   2 !    7.9   0.0   0.00094      0.77      57      81 ..     112     136 ..      97     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6e-07
   TIGR01126  10 vldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataeke.laskfkvsgf 72 
                 +   + ++++ f a WC  C+  +P+  ++ ++  k+ee  ++  v ++++++  +s ++  +f
  MMETSP1174-20130828|1389_1  43 LG-GKTNIMIYFSAHWCPPCRGYTPQLSDAYSASGKKEE-TVVVFVSSDQDENgFNSYYDSMSF 104
                 44.68899******************9988776666554.455555555554313344555555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00094
   TIGR01126  57 ataekelaskfkvsgfPtlkffkkg 81 
                    +++l++k++v+g Ptl +++  
  MMETSP1174-20130828|1389_1 112 RARKEALSQKYGVRGIPTLVLLDGS 136
                 55678999***********998754 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   1.7e-06      49     150 ..      32     139 ..       8     150 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.1e-09
   TIGR00385  49 kekvqlltaevlkkgklvLlnvwasWCptCraehplLke.lakeg...lrivgvdykDesqkalkfLkelGnPyqlvlaDekGklal..dlGvygaPetflvdgnGvi 150
                 +++  + t+e+l     +++ + a WCp+Cr   p L +  +++g     +v     D+++++++   +    y+l   D   k al  ++Gv g+P   l+dg+G +
  MMETSP1174-20130828|1389_1  32 TKDGVVATDEALGGKTNIMIYFSAHWCPPCRGYTPQLSDaYSASGkkeETVVVFVSSDQDENGFNSYYDSMSFYALPYSDRARKEALsqKYGVRGIPTLVLLDGSGNL 139
                 4444455545555555667788899**********9987356666443568888899***********************9877666448***************976 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   4.5e-05     0.037     363     418 ..      46     104 ..      36     115 .. 0.72
   2 !    7.5   0.0   0.00068      0.56      61      83 ..     112     134 ..     107     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.5e-05
   TIGR01130 363 tKdVLvefYApWCGHCkkLapiYeelaekykk..eedvviakldataNdvpe.fevegF 418
                 + ++++ f A WC  C+  +p   ++ +   k  e  vv +  d  +N  ++ ++  +F
  MMETSP1174-20130828|1389_1  46 KTNIMIYFSAHWCPPCRGYTPQLSDAYSASGKkeETVVVFVSSDQDENGFNSyYDSMSF 104
                 5689999*********9999998776444433335556667888888887776666665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00068
   TIGR01130  61 ateekelaqkygvsGyPtLkifr 83 
                    ++ l+qkygv+G PtL ++ 
  MMETSP1174-20130828|1389_1 112 RARKEALSQKYGVRGIPTLVLLD 134
                 567789*************8765 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0048       3.9       5      15 ..      53      63 ..      48      71 .. 0.74
   2 ?    5.6   0.0     0.006       4.9      35      56 ..     111     132 ..     109     140 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0048
   TIGR02196  5 YttpwCppCkk 15
                ++ +wCppC+ 
  MMETSP1174-20130828|1389_1 53 FSAHWCPPCRG 63
                3789*****85 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.006
   TIGR02196  35 dsaaaeellkklgqrsvPvivi 56 
                 d a +e l +k+g r++P++v 
  MMETSP1174-20130828|1389_1 111 DRARKEALSQKYGVRGIPTLVL 132
                 77888999***********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 489.33
//
Query:       MMETSP1174-20130828|1391_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.1  16.8      0.044   10.0  11.6    1.1  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
        1.8    4.9   7.2        2.1    4.8   5.0    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.6   2.2e-05     0.044      59     114 ..      24      74 ..      16     119 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.2e-05
   TIGR03490  59 sensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepn 114
                 + n+nn++n++++++++ +s+++++++ +s+n ++     + + +++++++++ + 
  MMETSP1174-20130828|1391_1  24 NSNNNNSNNNSNNSNSNSNSNNSNSNNSNSNNSNN-----SSNSNINSNSNSNSNS 74 
                 22333333444444444444455544444444443.....3344444333333332 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.0     0.001       2.1     214     271 ..      26      84 ..      19     122 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.001
   TIGR01651 214 dtdddqpredeqeeegeeeeegdeasaaeea.eaaeeeeesgeeeaaeaddddlsdedd 271
                 ++++ + ++++ + +++ +++++++s+++++ ++++++ +s+ +  +++++ ++sd  d
  MMETSP1174-20130828|1391_1  26 NNNNSNNNSNNSNSNSNSNNSNSNNSNSNNSnNSSNSNINSNSNSNSNSNAGGVSDGFD 84 
                 22222223333333333333333333333330233333344444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 358.92
//
Query:       MMETSP1174-20130828|1392_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.48
# Mc/sec: 109.99
//
Query:       MMETSP1174-20130828|1393_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 823.93
//
Query:       MMETSP1174-20130828|1396_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-57  191.8   0.0    1.7e-40  136.7   0.0    2.0  2  TIGR01179 galE: UDP-glucose 4-epimerase
    1.7e-54  182.9   0.0    2.2e-54  182.5   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      1e-39  134.2   0.0    1.3e-39  133.8   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    5.7e-39  132.0   0.0    1.2e-38  130.9   0.0    1.5  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    7.9e-25   85.5   0.0    4.1e-19   66.7   0.0    2.1  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    6.3e-17   59.6   0.0    6.7e-16   56.2   0.0    2.0  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    6.9e-16   56.0   0.0    1.7e-15   54.7   0.0    1.6  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    2.8e-15   53.8   0.0    6.8e-14   49.3   0.0    2.5  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      7e-13   46.0   0.0    3.4e-12   43.8   0.0    1.8  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    9.5e-13   45.9   0.0    1.9e-12   44.9   0.0    1.4  1  TIGR01746 Thioester-redct: thioester reductase domain
    2.5e-11   41.5   0.0    1.6e-10   38.9   0.0    1.9  1  TIGR01777 yfcH: TIGR01777 family protein
    5.7e-06   23.3   0.0    1.1e-05   22.3   0.0    1.4  1  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
    0.00048   15.4   0.0    0.00068   14.9   0.0    1.2  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
      0.003   13.8   0.0      0.004   13.4   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
     0.0059   13.7   0.0     0.0083   13.2   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0065   13.7   0.0     0.0099   13.1   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
  ------ inclusion threshold ------
      0.019   12.2   0.0      0.029   11.6   0.0    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      0.032   11.8   0.0      0.043   11.3   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   7.4e-43   1.7e-40       1     179 [.      61     247 ..      61     254 .. 0.93
   2 !   53.1   0.0     2e-17   4.6e-15     221     326 ..     273     374 ..     269     379 .. 0.93

  Alignments for each domain:
  == domain 1    score: 136.7 bits;  conditional E-value: 7.4e-43
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit........evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGA 179
                 k+LvtGgaG+iGshv+  ll++g +v+++D++ +     lk+ +           ++ ++egd+ad++ +e+v+e+e+++ v+H+aa++ v  s+++P  Y ++nv++t++Lle+ q++g ++++F+ss++vYg s+  ++sE+ ++  p++pY ++k m E +   +++  ++++v+ LR+F v G 
  MMETSP1174-20130828|1396_1  61 KVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVNDYYDVRLKRRNLSLlrsrwpesRLRYYEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNEHFVFASSSSVYGGSKLDTFSETDAVDnPVSPYAATKKMCELLAYTYHSL-YGIDVAGLRFFTVYGP 247
                 79******************************9988888877653223455677799**************************************************************************************988877*************999999999.*************995 PP

  == domain 2    score: 53.1 bits;  conditional E-value: 2e-17
   TIGR01179 221 DGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWek 326
                 DG + RDy +++D+ ++ +++l+      ++++ynlG+g+  s+++ i++v++ + ++ ++e+ +  +GD+++  a+ sk++  lg++pk +   + i+   dW +
  MMETSP1174-20130828|1396_1 273 DGSSSRDYTYIDDIVDGVVRSLDRPC---GYQIYNLGNGNPVSLRDFIRTVEQCTRRKANIEVMPDQPGDVPRTAANISKASMLLGYQPKVQ-FSDGIQRLVDWYT 374
                 9*****************99988655...8************************************************************99.8888888888866 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   9.8e-57   2.2e-54       1     314 [.      61     376 ..      61     380 .. 0.90

  Alignments for each domain:
  == domain 1    score: 182.5 bits;  conditional E-value: 9.8e-57
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLt..yag..nkenlkdl...edeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettpl.aPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                 k+LvtGGaGfiGs + + +l++ +d  v+ +D+++  y    ++ nl  l   + e+r+++ +gdiad++ ver+++ e+++ vv++aa + v  si++p ++i++nv Gt +lle ++++  + +++  s   vyG  + d  +f+et+++ +P sPy+a+k   +ll  +y+  yg++v   r    yGp   p+    +++ ++ +g  ++ yGdG+  rD+ y++D + ++   l++    ++yn+g ++  +  + ++++  +  + +  ie   d+pG+  r a + sk +  Lg++pkv+f +g+++ v+Wy+++
  MMETSP1174-20130828|1396_1  61 KVLVTGGAGFIGSHVAERLLHRGDD--VIIIDEVNdyYDVrlKRRNLSLLrsrWPESRLRYYEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRY-GNEHFVFASSSSVYGGSKLD--TFSETDAVdNPVSPYAATKKMCELLAYTYHSLYGIDVAGLRFFTVYGPRGRPDMAPFKFVDRVSNGVAIQQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGYQIYNLGNGNPVSLRDFIRTVE-QCTRRKANIEVMPDQPGDVPRTAANISKASMLLGYQPKVQFSDGIQRLVDWYTSE 376
                 68************99999997754..666776643233322445555551116789*************************************************************995.66789999********9999..5899998758******************************************999889************************************************************9975.55678999********************************************975 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   5.8e-42   1.3e-39       1     296 [.      62     360 ..      62     361 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 5.8e-42
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvl....ynsfnswGwldevekev.kkeievvlGdirdaesvkkavkgv..dvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhpl.qaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavG.evinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                 vlvtG  GfiGsh++e+l+++G +v  + +    y+ + +   l  +++   ++++  + Gdi da++v+++ +    + v+hlaa  ++  s + p  y+++nv+Gt+ +l+ a+ ++ e++v +s+s vyG ++    +e+  + ++ sPy+a+k  ++ la+++++ + + va +r f  yGPr          + ++ +g    + G+ s +rd++y+ d+v+g+++  +  +  G ++ n+g++  +s+ d ++++++    + +i++  +    +  +v r  a+ sk++ l+g++pk+
  MMETSP1174-20130828|1396_1  62 VLVTGGAGFIGSHVAERLLHRGDDVIIIDEvndyYDVRLKRRNLSLLRSRWpESRLRYYEGDIADAKFVERVFEAErpKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNEHFVFASSSSVYGGSKLDTFSETDAVdNPVSPYAATKKMCELLAYTYHSLYGIDVAGLRFFTVYGPRGRPDMAPFKFVDRVSNGVAIQQYGDGSSSRDYTYIDDIVDGVVRSLD--RPCGyQIYNLGNGNPVSLRDFIRTVEQCTRRKANIEVMPD----QPGDVPRTAANISKASMLLGYQPKV 360
                 89***********************988651111444455566776666542678****************987542279**************************************************************98873689*************************************988777668899999999999********************988665..44552788*********************99998876433....457999***************9986 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   5.3e-41   1.2e-38       1     315 [.      62     375 ..      62     376 .. 0.88

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 5.3e-41
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk..............gekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTt..eldgellmenNyeyskellelcaek.evkliYASSAavYGdse.eefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyi.dmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkella 315
                 ++vTGgaGfiGs ++ +l ++g +d++++D++++               +++ + + + + ++i++++++er+ +  +++ ++v+H +A +       d  + +++N++ +++llel++   + ++++ASS +vYG s+ ++f+e++ + +P   Y+  K++ + l+     ++     v+Glr+F VyGpr     +ma   fk+++++ ++ ++      +q+ dG  +RD++y++D+v+ ++  l+++    i+n+G g+  s +d + +v + ++++ +ie + d P ++       T a+++k+   + ++++++ ++g+++ v+++++
  MMETSP1174-20130828|1396_1  62 VLVTGGAGFIGSHVAERLLHRG-DDVIIIDEVNDyydvrlkrrnlsllRSRWPESRLRYYEGDIADAKFVERVFE--AERPKWVVHLAARAGVRpsIEDPFVYIHSNVHGTTRLLELAQRYgNEHFVFASSSSVYGGSKlDTFSETDAVDNPVSPYAATKKMCELLAYTY--HSLYGIDVAGLRFFTVYGPRGR--PDMA--PFKFVDRVSNGVAI------QQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGYQIYNLGNGNPVSLRDFIRTVEQCTRRKANIEVMpDQPGDV-----PRTAANISKASMLLGYQPKVQFSDGIQRLVDWYTS 375
                 69******************99.9******************99999888***********************98..599********99876421456666789*************9862578**********977625789999999**************999843..5666668************963..4565..58999999988765......688999999*******************98888***********************9999999752345553.....67******************************976 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.8e-21   4.1e-19       4     172 ..      59     232 ..      57     240 .. 0.82
   2 !   16.6   0.0   3.2e-06   0.00073     272     334 ..     318     377 ..     299     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.8e-21
   TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGys.....ldpetkpnlfellkla.kklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalGG.hDpYsaskaaaelvvasyrksf 172
                 +kkvlvtG  Gf Gs ++  L + G +v+ +       d++ k+ +  ll+ +  + +  ++ gdi da+ +e+++e  +P+ v hlaa + vr s +dP+  ++ nv Gt +lle ++   + +  v   s  vY  + +  ++ etda+     pY+a k  +el++ +y++ +
  MMETSP1174-20130828|1396_1  59 KKKVLVTGGAGFIGSHVAERLLHRGDDVIIIDevndyYDVRLKRRNLSLLRSRwPESRLRYYEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGN-EHFVFASSSSVYGGS-KLDTFSETDAVDNpVSPYAATKKMCELLAYTYHSLY 232
                 79***********************9987554111112333333333333332133334789********************************************************99985.6678899999**875.6789******975379****************9876 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.2e-06
   TIGR02622 272 kkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeay 334
                 +++++ +   ka+ie    +++p +      +++ka + lg++p+ ++++ +++ v+Wy + y
  MMETSP1174-20130828|1396_1 318 RTVEQCT-RRKANIEV--MPDQPGDVPRTAANISKASMLLGYQPKVQFSDGIQRLVDWYTSEY 377
                 4433333.33444443..44578888888899***************************9766 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.9e-18   6.7e-16       1     263 [.      60     319 ..      60     333 .. 0.78
   2 ?    1.3   0.0      0.15        33     301     336 ..     336     371 ..     322     377 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2.9e-18
   TIGR01472   1 kvalitGitGqdGsylaelllekgyevhGlirrsssfnterle...hlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpf.nprspyaaaklyayyivvnyreayglfavnGilfnhesprrGe.tfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkp.ddyviatgettsvrefvev 263
                 k+ l+tG +G  Gs++ae ll++g +v  +      +   rl+         +  e +l  + Gd++d++ + ++ e  +p+ +  laa++ v+ s e p   ++++  Gt rlle  +  ++++   f  as+s +yG +k    +e+    np spyaa+k +   ++  y   yg+  v+G+ f      rG  ++   k    v   + g       G+  ++rd+ y  d v+ +   l ++   + y +  g+  s+r+f+ +
  MMETSP1174-20130828|1396_1  60 KKVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVND-YYDVRLKrrnLSLLRSRWPESRLRYYEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNEH---FVFASSSSVYGGSKLDTFSETDAVdNPVSPYAATKKMCELLAYTYHSLYGID-VAGLRFFTVYGPRGRpDMAPFKFVDRV---SNGVAI-QQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGyQIYNLGNGNPVSLRDFIRT 319
                 5789**********************986655544.444444311033344455667899999*************************************9999***************999986...889********999888777765439************************96.556665555555554155555554444...444333.345888999999999999999887777665325677788888888888865 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.15
   TIGR01472 301 rptevdlllGdatkakeklgwkrevslkelvkemve 336
                 +p +v     + +ka   lg++++v++++ ++++v+
  MMETSP1174-20130828|1396_1 336 QPGDVPRTAANISKASMLLGYQPKVQFSDGIQRLVD 371
                 577888888999*****************9999987 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   7.3e-18   1.7e-15       1     250 [.      61     344 ..      61     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 7.3e-18
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs............................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvga.llvhiSTDYvFDGekkrpYreedet.nPlnvYgqsKlaGEvavraase....kalivRtswlygasggrnFvk.tmlrlakereelkvvadQigsP..Tyakdlaevlaaller.eargvyHlanegqvSwyefaqaifevleeeglelkveevkpisskeyptpA 250
                 ++l+tG++g +g++ +e+l + g +v+ +++                             + d++d++ +e+++++++P+ vv+ aA   V  + +++ +  + N+ +t++l ++a+r+g   +v+ S   v+ G+k + ++e+d++ nP++ Y+++K + E+++  +      +++ +R   +yg +g  + +    +++++++  ++   d   s   Ty +d+ + +++ l+r   + +y l n + vS  +f +++ +    ++      ev p +  ++p+ A
  MMETSP1174-20130828|1396_1  61 KVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVndyydvrlkrrnlsllrsrwpesrlryyEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNeHFVFASSSSVYGGSKLDTFSETDAVdNPVSPYAATKKMCELLAYTYHSlygiDVAGLRFFTVYGPRGRPDMAPfKFVDRVSNGVAIQQYGDGSSSRdyTYIDDIVDGVVRSLDRpCGYQIYNLGNGNPVSLRDFIRTVEQCTRRKA----NIEVMPDQPGDVPRTA 344
                 79*******************9999999988889*************************************************************************************97369********************98769**************998877655678888**********987766425788889999999999988885448999*******9999978899****************99988877776....3466666666666544 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0     3e-16   6.8e-14       2     251 ..      61     329 ..      60     348 .. 0.73
   2 ?    0.9   0.0      0.16        35     296     323 ..     347     375 ..     341     378 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 3e-16
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrkt......sdrrnleeldv.......EiveGdlkdeaslkkalkG..cealfHvAAdyrl..wakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae.glpvvivnPstPiGprDikptPtgriivdalkr.kmPayvdt..gLnlvdvddvaegHllAlerGriGerYiLGgen.ltlkqlleklaeitglkap 251
                 kvlvtG++GF+Gs+v++ ll++G +v ++   +       +rrnl+ l            eGd++d++ +++  +    + ++H+AA   +    +dp   +++nv+gt+++le A++ g e+ v++ss ++ g ++  + ++   +  +++ + +Y  +k + E  + +     g +v  +   t  Gpr +    + + + ++ ++  +  y d     +   +dd+++g ++ l+r    + Y LG+ n ++l++ ++++++ t +ka 
  MMETSP1174-20130828|1396_1  61 KVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVNdyydvrLKRRNLSLLRSrwpesrlRYYEGDIADAKFVERVFEAerPKWVVHLAARAGVrpSIEDPFVYIHSNVHGTTRLLELAQRYGNEHFVFASSSSVYGGSKLDTFSE---TDAVDNPVSPYAATKKMCELLAYTYHSLyGIDVAGLRFFTVYGPRGRPDMAPFKFVDRVSNGvAIQQYGDGssSRDYTYIDDIVDGVVRSLDRPCGYQIYNLGNGNpVSLRDFIRTVEQCTRRKAN 329
                 89**********************9988865431111115788888886422211115789**********9877622578*****986551168999999*******************************99655543333...335688899999999999988888777678888777777777777766666666666666653466676641134667777777777777777766677777755547777777777777777665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.16
   TIGR03466 296 sakAereLgyrqr.paeealkdaveWfra 323
                  +kA+  Lgy+ +  +++++++ v+W+ +
  MMETSP1174-20130828|1396_1 347 ISKASMLLGYQPKvQFSDGIQRLVDWYTS 375
                 589*******97626899********986 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.5e-14   3.4e-12       3     224 ..      58     303 ..      56     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.5e-14
   TIGR03589   3 nnksilitGgtGsfGkkfikkllekykvkkiii.....ysrdelkqfe...lqqkfeedklrffiGdvrdkerleraled..vdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvals...............tdkaanPvnlyGatklasdklfvaannisGekktrfsvvryGnvvGsrG..svvPf.fkslieeGvkelpitdermtrfwitleeGvelvlkaleemkGGeif 224
                 ++k +l+tGg+G  G +  ++ll++ +   iii     y    lk+ +   l+++++e++lr++ Gd+ d + +er +e      vvh aa   v  +  +P+  i++n++G++ +++ a   g ++ v  s               td   nPv  y atk +++ l     ++    ++  +  r+  v G rG   + Pf f  ++++Gv+     d   +r +  +++ v+ v+++l++  G +i+
  MMETSP1174-20130828|1396_1  58 DKKKVLVTGGAGFIGSHVAERLLHRGDD-VIIIdevndYYDVRLKRRNlslLRSRWPESRLRYYEGDIADAKFVERVFEAerPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNEHFVFASsssvyggskldtfseTDAVDNPVSPYAATKKMCELLA---YTYHSLYGIDVAGLRFFTVYGPRGrpDMAPFkFVDRVSNGVAIQQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGYQIY 303
                 789********************99764.34441111144444555431113456688*************99998876411689**********99999******************9988887776633223333333444444578889***********999875...556666667789999******99944599*98999******99999999********************999998887 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   8.4e-15   1.9e-12       1     281 [.      61     325 ..      61     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 8.4e-15
   TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLa...eevdtivhngAlVnfvqpYee...LraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpGrilgdsetGainssdi.llrlvkaclelglvPdleelteellpvdfvaraivalasqlaaeaggavfhvvnpkealsldefleilke.ag 281
                 +vl+TG  Gf+G + +e Ll r  +  +i  V    +     RL+   r+ +l  + + ++r++ + Gd       + +a++ +++   e    +vh +A+  +  + e        NV+gt  +l+la+++   ++++ S+ sv+   +l +   ++++++  +p  +++Ya++K + Ell     +  g++v+ +R   + g    G+  +  + ++ +v+  +++ ++ d   +  + + +d+++  +v++  ++      +++++ n+ +++sl++f+ ++++   
  MMETSP1174-20130828|1396_1  61 KVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVNDYYD----VRLKR--RNLSLLRSRWPESRLRYYEGD-------IADAKFVERVfeaERPKWVVHLAARAGVRPSIEDpfvYIHSNVHGTTRLLELAQRYGNEHFVFASSSSVYGGSKLDT---FSETDAVDNP--VSPYAATKKMCELLAYTYHSLyGIDVAGLRFFTVYGP--RGRPDMAPFkFVDRVSNGVAIQQYGDGSSS-RDYTYIDDIVDGVVRSLDRPCG---YQIYNLGNG-NPVSLRDFIRTVEQcTR 325
                 69********************855444333333333....55554..45555555555579*******.......889999888844466678*****998743332222214589******************************877664...3333333333..569****************999**************5..899999976357899999999********5.55*************9999977...79******7.56*******99987444 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   6.8e-13   1.6e-10       1     249 [.      62     332 ..      62     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 6.8e-13
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..............aeee......alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee..eeagddFlaklceeWEeaaqaaek.lgvrvvllRtgivLgekGG.alakllllfklglg...gklGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpallpv 249
                 vl+tGg G+iG++++e+l ++g++v+i+   +     + k +  +  ++              a+++      + e+ + v++La +  +  r + e     ++S ++ t++l+el +++    + ++ as+ ++Yg s+ +++ e++  +++ + + a + +  E  a + ++  g+ v+ lR+  v g++G   +a ++ + ++  g    + G+G++   +  ++D+v+ +   l+++    ++N+   +pv+ ++f++++ +   r a ++v
  MMETSP1174-20130828|1396_1  62 VLVTGGAGFIGSHVAERLLHRGDDVIIIDEVNDYYDVRLKRRNLSLLRSrwpesrlryyegdiADAKfvervfEAERPKWVVHLAARAGV--RPSIEDPFVYIHSNVHGTTRLLELAQRYG--NEHFVFASSSSVYGGSKLDTFSETDavDNPVSPY-AATKKMCELLAYTYHSlYGIDVAGLRFFTVYGPRGRpDMAPFKFVDRVSNGvaiQQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGYQIYNLGNGNPVSLRDFIRTVEQCTRRKANIEV 332
                 79*************************9877665555444444333333444446677777763333666667889999******99877..67888888999*************99997..456899999999************9644444544.55566677777766551589***************4234444444444444112578****************************************************999988774 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.8e-08   1.1e-05       4     120 ..      59     185 ..      57     199 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.8e-08
   TIGR04130   4 dkillitggtgsfgnavlrrfldt..d...ikeirifsrdekkq...ddmrkkynnkklkfyigdvrdyr...silnatrgvdfiyhaaalkqv.pscefhpleavktnvlgtenvleaaianevkrvv 120
                 +k +l+tgg+g +g  v +r+l+   d   i e+  +     k+     +r ++ +++l++y gd+ d +    +++a r   ++ h aa   v ps e  p+  +++nv gt  +le a   + +  v
  MMETSP1174-20130828|1396_1  59 KKKVLVTGGAGFIGSHVAERLLHRgdDviiIDEVNDYYDVRLKRrnlSLLRSRWPESRLRYYEGDIADAKfveRVFEAERP-KWVVHLAARAGVrPSIE-DPFVYIHSNVHGTTRLLELAQRYGNEHFV 185
                 567899***************9852233334566555433333301145799**************997622256777776.56777777766626666.8*****************98766655555 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     3e-06   0.00068     969    1114 ..      56     193 ..      20     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3e-06
   TIGR03443  969 aeeevtvfltGatGflGsfilrdlltrrkssslkvvahvrakseeaglerlrkagkaygiWdeewvskievvlGdlskekfGlseekwkklaeevdviihnGal..v..hWvyPysklrdanvigtinvlklaaegkaklfsfvsstsal 1114
                   +++++v++tG++Gf+Gs++ + ll+r    ++ ++  v     +  l+r r+ +  +  W e   s+++   Gd++++kf   e+ ++  ae+   ++h  a   v      P+  + ++nv gt   l+la++    +f f ss s+ 
  MMETSP1174-20130828|1396_1   56 HTDKKKVLVTGGAGFIGSHVAERLLHRG--DDVIIIDEVND-YYDVRLKR-RNLSLLRSRWPE---SRLRYYEGDIADAKFV--ERVFE--AERPKWVVHLAARagVrpSIEDPFVYI-HSNVHGTTRLLELAQRYGNEHFVFASSSSVY 193 
                  456899********************99..66666666653.45566666.666777777877...4899999***999995..66665..455566666544311211344566655.6899999999999999999999999999985 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.8e-05     0.004     414     446 ..      59      91 ..      44     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.8e-05
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladl 446
                 ++ +lvtGga+ iG+ va rl ++G  v+++d 
  MMETSP1174-20130828|1396_1  59 KKKVLVTGGAGFIGSHVAERLLHRGDDVIIIDE 91 
                 67789*************************996 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.6e-05    0.0083       2      35 ..      60      93 ..      59     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.6e-05
   TIGR01963  2 kvalvtGaasGiglaiakelaaaGakvvvndlee 35
                k +lvtG a+ ig ++a++l + G +v++ d  +
  MMETSP1174-20130828|1396_1 60 KKVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVN 93
                889***********************99987554 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.4e-05    0.0099       2      33 ..      61      92 ..      60     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-05
   TIGR02415  2 valvtGaaqGiGkaiaerLakdGfavavadln 33
                  lvtG+a  iG+ +aerL + G +v++ d  
  MMETSP1174-20130828|1396_1 61 KVLVTGGAGFIGSHVAERLLHRGDDVIIIDEV 92
                579************************99854 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013     0.029       3      35 ..      59      91 ..      57      99 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00013
   TIGR03206  3 dkvaivtgggggiggaicrrfaeegakvavldl 35
                +k ++vtgg+g ig+ +  r+ + g  v ++d 
  MMETSP1174-20130828|1396_1 59 KKKVLVTGGAGFIGSHVAERLLHRGDDVIIIDE 91
                68899***********************99984 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019     0.043       1      32 [.      62      93 ..      62     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
   TIGR01830  1 alvtGasrgiGkaiakklakegakvvitersk 32
                +lvtG++  iG+ +a++l ++g +v+i ++ +
  MMETSP1174-20130828|1396_1 62 VLVTGGAGFIGSHVAERLLHRGDDVIIIDEVN 93
                69************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.71
# Mc/sec: 712.00
//
Query:       MMETSP1174-20130828|1394_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1127.91
//
Query:       MMETSP1174-20130828|1397_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1273.98
//
Query:       MMETSP1174-20130828|1399_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.2   1.8     0.0038   14.5   1.3    1.3  1  TIGR01157 pufL: photosynthetic reaction center L subunit


Domain annotation for each model (and alignments):
>> TIGR01157  pufL: photosynthetic reaction center L subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.3   9.2e-07    0.0038      59     122 ..     165     228 ..     150     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.2e-07
   TIGR01157  59 calgafvswalreveiarklgigyhvplafslailayltlvvirpvlmgawgyafpygifthld 122
                 +  + f s a+    i   lg+g+h+ +   l ++ y t  v    l   w+  +pygi+ hl 
  MMETSP1174-20130828|1399_1 165 AFSILFFSSAMPFLYIFAALGFGFHLIVDQWLFVYFYRTPPVYDMTLSDNWARIMPYGIWLHLM 228
                 445678899999999***********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 1205.33
//
Query:       MMETSP1174-20130828|1400_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|1401_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 746.03
//
Query:       MMETSP1174-20130828|1402_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1435.38
//
Query:       MMETSP1174-20130828|1403_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1129.83
//
Query:       MMETSP1174-20130828|1407_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|1409_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|1412_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.9   0.2      0.046   12.1   0.1    1.3  1  TIGR00029 S20: ribosomal protein S20


Domain annotation for each model (and alignments):
>> TIGR00029  S20: ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05     0.046      25      75 ..     126     178 ..     114     182 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
   TIGR00029  25 ksklktliKkveasveagekdkak..ealkevakkidkaakkgiihkNkAark 75 
                 k k+ktl++ +++++e++ ++k +  e +k v   +d  +  +++   k  r+
  MMETSP1174-20130828|1412_1 126 KVKMKTLVRMFRNKIEVNSAAKSQllEVIKRVTLSVDHPVDGRVLVLKKSDRH 178
                 889**************988654433778888888888888888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.32s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1100.79
//
Query:       MMETSP1174-20130828|1413_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1174-20130828|1414_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|1418_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|1417_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 434.17
//
Query:       MMETSP1174-20130828|1419_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   11.7   0.0      0.011   11.7   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.6e-06     0.011     129     153 ..      18      42 ..       6      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.6e-06
   TIGR00870 129 tkgitalilAihkqnyeivklLlek 153
                   g t+l +A++k+n+ +v+ L+  
  MMETSP1174-20130828|1419_1  18 DDGRTPLYVAAQKDNLDVVRYLVGE 42 
                 5799******************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|1422_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 632.87
//
Query:       MMETSP1174-20130828|1434_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1174-20130828|1436_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1174-20130828|1443_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|1444_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 303.97
//
Query:       MMETSP1174-20130828|1447_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 186.51
//
Query:       MMETSP1174-20130828|1460_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 673.84
//
Query:       MMETSP1174-20130828|1456_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   11.8   1.2      0.063   11.2   0.1    1.9  2  TIGR02301 TIGR02301: TIGR02301 family protein
       0.83    5.5  12.6        1.1    5.2   8.7    1.0  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02301  TIGR02301: TIGR02301 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.47   9.6e+02      23      23 ..      75      75 ..      54     111 .. 0.57
   2 ?   11.2   0.1   3.1e-05     0.063      20      69 ..     149     200 ..     132     211 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.47
   TIGR02301 23 k 23
                 
  MMETSP1174-20130828|1456_1 75 S 75
                2 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.1e-05
   TIGR02301  20 aeekpaPydqkllrlaeiLGslhyLRnlCgekge..deWRsemealidaeka 69 
                 a+e  +P+ ++l++l ei G+l + R l + ++   ++ R++++++ + ++ 
  MMETSP1174-20130828|1456_1 149 AKEGTKPDAKQLAKLKEIEGELSAARALTQAQESkvNKDRNSVSKIEKEDNK 200
                 667789**********************987774125566666665444443 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.7   0.00052       1.1     743     886 ..     100     240 ..      89     252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00052
   TIGR03683 743 qeledllkesaeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvvvlvsekegkvkvvvssgekvkvkagelvkeiakllggkggGkeklaqgkved 886
                 +  e++l+e+   lkv++++l++  + +++++k+q+k   k  + + +l +e ++ +a+++ ++k +  +++a ++ ++++ +k++++++ v  ++++++k+k +++  +    + ge+++ i +    k + ke la g+  +
  MMETSP1174-20130828|1456_1 100 KAAEQTLAEEDALLKVQESALKTDYSAYITDLKAQEKLETKETKLIKKLAKEGTKPDAKQLAKLKEIEGELSAARALTQAQESKVNKDRNSVSKIEKEDNKAKKLIKNLK---AEEGEIAQVIEEAEIVKTEEKEILAAGGNLN 240
                 567899****************************9998888888888888899999***************999999999999998888888777777777776666554...5566666666666666667777777765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       553  (0.134812); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1051.79
//
Query:       MMETSP1174-20130828|1455_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00065   17.8   7.6        4.3    5.5   0.0    5.9  8  TIGR02793 nikR: nickel-responsive transcriptional regulator NikR
  ------ inclusion threshold ------
        0.1   11.1  16.1        5.8    5.4   0.3    5.0  6  TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR02793  nikR: nickel-responsive transcriptional regulator NikR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.017        35      56      75 ..      57      76 ..      54      82 .. 0.87
   2 ?    1.6   0.1     0.033        67      58      82 ..     112     136 ..     100     158 .. 0.81
   3 ?   -3.2   0.0         1   2.1e+03      56      75 ..     161     180 ..     151     185 .. 0.84
   4 ?   -2.3   0.0      0.55   1.1e+03      53      72 ..     205     224 ..     162     228 .. 0.51
   5 !    5.5   0.0    0.0021       4.3      47      82 ..     247     282 ..     236     303 .. 0.80
   6 ?    3.2   0.0     0.011        22      47      75 ..     360     388 ..     336     403 .. 0.77
   7 !    3.4   0.0    0.0094        19      48      80 ..     410     443 ..     397     449 .. 0.72
   8 ?   -2.6   0.0      0.65   1.3e+03      52      74 ..     466     488 ..     453     498 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.017
   TIGR02793 56 syvydhskrdlarkltqtlh 75
                s vyd  krdl r+l ++++
  MMETSP1174-20130828|1455_1 57 SSVYDVAKRDLLRRLEDAHY 76
                569************99875 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.033
   TIGR02793  58 vydhskrdlarkltqtlhdhhdlsv 82 
                  y+  kr++ ++l +t+ ++ ++  
  MMETSP1174-20130828|1455_1 112 AYEEAKREMLQRLDDTYTHYCEMET 136
                 69**************999888765 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1
   TIGR02793  56 syvydhskrdlarkltqtlh 75 
                 s vy+  k +l r+l ++++
  MMETSP1174-20130828|1455_1 161 SAVYEDAKSKLLRRLEEAHY 180
                 56899999999999998765 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 0.55
   TIGR02793  53 avlsyvydhskrdlarkltq 72 
                  v + vy+  k  l ++l +
  MMETSP1174-20130828|1455_1 205 PVSASVYEDAKSALLKRLED 224
                 23344666666666666665 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0021
   TIGR02793  47 ddaacvavlsyvydhskrdlarkltqtlhdhhdlsv 82 
                  daa  +  s vy+  kr++ r+l + +++ +d+  
  MMETSP1174-20130828|1455_1 247 ADAAVPGLGSSVYEDAKREMLRRLEEVHYATKDVCA 282
                 44555566789*****************99999865 PP

  == domain 6    score: 3.2 bits;  conditional E-value: 0.011
   TIGR02793  47 ddaacvavlsyvydhskrdlarkltqtlh 75 
                   aa+ a    vy+  krdl ++l ++++
  MMETSP1174-20130828|1455_1 360 PAAAAPASTGDVYEDAKRDLLQRLEDAHY 388
                 345566677789************99875 PP

  == domain 7    score: 3.4 bits;  conditional E-value: 0.0094
   TIGR02793  48 daacv.avlsyvydhskrdlarkltqtlhdhhdl 80 
                  +a v +  s vy+  kr++ r+l + +++ +++
  MMETSP1174-20130828|1455_1 410 VEAVVpGLGSSVYEDAKREMLRRLEEVHYATKEV 443
                 444441344889*************999887776 PP

  == domain 8    score: -2.6 bits;  conditional E-value: 0.65
   TIGR02793  52 vavlsyvydhskrdlarkltqtl 74 
                 v + s  y+  k+ l ++l +t+
  MMETSP1174-20130828|1455_1 466 VVAHSQDYEDAKKALLKQLEDTK 488
                 33345567777777777777775 PP

>> TIGR03483  FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.018        37      29      89 ..      61     118 ..      49     127 .. 0.67
   2 ?    0.9   0.0     0.073   1.5e+02       9      50 ..      95     135 ..      89     180 .. 0.60
   3 ?    4.6   0.1    0.0052        11       9      69 ..     191     253 ..     183     279 .. 0.73
   4 ?    4.6   1.3    0.0053        11      31      90 ..     316     378 ..     306     394 .. 0.60
   5 ?    1.2   0.1     0.059   1.2e+02      17      47 ..     361     394 ..     349     431 .. 0.64
   6 ?    5.4   0.3    0.0028       5.8      25      70 ..     470     514 ..     451     528 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.018
   TIGR03483  29 drgplgLlkRlanglsrRdeeadeAalepaaraaaaqpvealpkreralaqdasvYaprrg 89 
                 d  ++ Ll+Rl ++     e+ d+ a   a++  +a+ v++  +  +a+ + +s Y  ++ 
  MMETSP1174-20130828|1455_1  61 DVAKRDLLRRLEDAHYGTTEKRDAPAG--APAGVSAPVVNV-AEAVKATGPGTSAYEEAKR 118
                 6678899****9977777776644444..444444444444.4566888888888877665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.073
   TIGR03483   9 PpvaqaeirraaeseaeseedrgplgLlkRlanglsrRdeea 50 
                 P+v  ae  +a  +  +s  ++ ++ +l+Rl ++ ++  e +
  MMETSP1174-20130828|1455_1  95 PVVNVAEAVKATGPG-TSAYEEAKREMLQRLDDTYTHYCEME 135
                 555555553333333.34445566789999999999877766 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.0052
   TIGR03483   9 Ppvaqaei..rraaeseaeseedrgplgLlkRlan.glsrRdeeadeAalepaaraaaaqpvea 69 
                 P+   + i  + +a+ +a+   +  + +LlkRl +   +  + + ++Aa+++ ++ aa + v+ 
  MMETSP1174-20130828|1455_1 191 PVASLNPIavETTAPVSAS-VYEDAKSALLKRLEDaHYGTSKKDGPSAAPVQSVNDAADAAVPG 253
                 6666666653334444444.44556789*****99668888888999*9999998888877664 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.0053
   TIGR03483  31 gplgLlkRlan...glsrRdeea.deAalepaaraaaaqpvealpkreralaqdasvYaprrgg 90 
                  + +Ll+Rl +   g s++d  a  +Aa+++aa+ aaa+ ++a p    a+a    vY  ++ +
  MMETSP1174-20130828|1455_1 316 AKAALLQRLEDahyGTSKKDGPArASAAPVAAAPVAAAAAATAAPA-AAAPASTGDVYEDAKRD 378
                 567899**98754566666654413455555554444444444332.24555555666665554 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.059
   TIGR03483  17 rraaeseaeseedrgplgLlkRlan...glsrRd 47 
                 ++aa++++ +  +  ++ Ll+Rl +   g s++d
  MMETSP1174-20130828|1455_1 361 AAAAPASTGDVYEDAKRDLLQRLEDahyGTSKKD 394
                 4455556666667778888888876423334443 PP

  == domain 6    score: 5.4 bits;  conditional E-value: 0.0028
   TIGR03483  25 eseedrgplgLlkRlan...glsrRdeeadeAalepaaraaaaqpveal 70 
                 +++ +  + +Llk l +    l r ++++++Aa++    a+aa+p++++
  MMETSP1174-20130828|1455_1 470 SQDYEDAKKALLKQLEDtklQLQRLEDAHNTAAPA----APAAAPAAPV 514
                 44455667789999977422455555555444444....3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1523.61
//
Query:       MMETSP1174-20130828|1462_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|1463_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|1466_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|1465_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 669.84
//
Query:       MMETSP1174-20130828|1468_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.9   2.1        1.1    7.0   0.2    1.9  2  TIGR02807 cas6_var: CRISPR-associated protein Cas6, subtype MYXAN
       0.46    8.3   6.9      1e+02    0.8   4.8    3.2  1  TIGR03934 TQXA_dom: TQXA domain
        4.7    5.2  12.5          1    7.3   0.7    2.8  3  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02807  cas6_var: CRISPR-associated protein Cas6, subtype MYXAN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2   0.00078       1.1     107     132 ..      13      38 ..       3      40 .. 0.86
   2 ?    6.7   0.2   0.00099       1.4     107     132 ..      39      64 ..      35      65 .] 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00078
   TIGR02807 107 karlvtikhaeeeeaflavarrqlea 132
                 +arl t+k aeeeea la+++++ e+
  MMETSP1174-20130828|1468_1  13 EARLATMKAAEEEEARLATMKAAEEE 38 
                 7999**************99988765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00099
   TIGR02807 107 karlvtikhaeeeeaflavarrqlea 132
                 +arl t+k aeeeea la+++++ e+
  MMETSP1174-20130828|1468_1  39 EARLATMKAAEEEEARLATMKAAVEE 64 
                 79******************998775 PP

>> TIGR03934  TQXA_dom: TQXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   4.8     0.076     1e+02      18      29 ..      32      43 ..       3      57 .. 0.62

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.076
   TIGR03934 18 lgglteeeaiaa 29
                ++  +eeea+ a
  MMETSP1174-20130828|1468_1 32 MKAAEEEEARLA 43
                333333333333 PP

>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   3.1     0.058        80      33      49 ..      18      34 ..       5      39 .. 0.60
   2 ?    2.3   1.9     0.028        38      34      50 ..      32      48 ..      26      53 .. 0.81
   3 ?    7.3   0.7   0.00075         1      34      53 ..      45      64 ..      41      65 .] 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.058
   TIGR02606 33 aLRlleerEarleaLra 49
                 +++ ee+Earl++++a
  MMETSP1174-20130828|1468_1 18 TMKAAEEEEARLATMKA 34
                34455666666666665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.028
   TIGR02606 34 LRlleerEarleaLraa 50
                +++ ee+Earl++++aa
  MMETSP1174-20130828|1468_1 32 MKAAEEEEARLATMKAA 48
                67889*********997 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00075
   TIGR02606 34 LRlleerEarleaLraaiqe 53
                +++ ee+Earl++++aa++e
  MMETSP1174-20130828|1468_1 45 MKAAEEEEARLATMKAAVEE 64
                67889*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 182.54
//
Query:       MMETSP1174-20130828|1470_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 221.28
//
Query:       MMETSP1174-20130828|1475_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|1476_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1174-20130828|1478_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|1474_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 706.87
//
Query:       MMETSP1174-20130828|1481_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1299.27
//
Query:       MMETSP1174-20130828|1484_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 174.41
//
Query:       MMETSP1174-20130828|1488_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-12   42.9   0.4    1.7e-11   41.6   0.0    1.5  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.5e-09   35.0   0.0    2.8e-09   34.9   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.8e-07   27.1   0.0    4.5e-07   26.8   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    6.9e-07   26.6   0.1    1.6e-06   25.4   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.8e-07   25.7   0.0      2e-06   24.7   0.0    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    9.7e-06   23.2   0.0    1.1e-05   23.0   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00023   17.6   0.0    0.00026   17.4   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
      0.055   11.1   0.6      0.085   10.5   0.4    1.2  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.4e-14   1.7e-11     211     295 ..      49     140 ..      26     145 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 3.4e-14
   TIGR01622 211 g........dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                             +s+ d+ +YvG++ ++   +eL+  F + G i+ v +  +p tG+ +Gy +++F d e   +Al  lN     GRe+kv+ 
  MMETSP1174-20130828|1488_1  49 SntapasaaAVGGSVEDTSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALL-LNDSIFKGRELKVAV 140
                 22222222245678999*****************************************************9999985.9999999*****986 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   5.5e-12   2.8e-09     185     270 ..      57     141 ..      32     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 5.5e-12
   TIGR01659 185 rpggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvr 270
                    g s+ dt +yv ++      d+l++ f   g+i +  il + +tgkprg a+v f   e  ++a   ln+ i +g    ++v+
  MMETSP1174-20130828|1488_1  57 AAVGGSVEDTSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENA-LLLNDSIFKGRELKVAVK 141
                 455779****************************************************998766555.579999999987777765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   8.8e-10   4.5e-07      59     150 ..      66     156 ..      50     160 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 8.8e-10
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcisvdncrlfvGgiPktk 150
                 + ++vG++  +   del   f   G i  + ++ + + Gk rGya+v f++ e+ ++a+    n  i +Gr l v +   n   + Gg  k k
  MMETSP1174-20130828|1488_1  66 TSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNpFTGKPRGYAYVEFADVEAVENALLL--NDSIFKGRELKVAVKRVNFPGMRGGKGKGK 156
                 789*******************************99*****************99999855..456999****99988777666666666655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.1e-09   1.6e-06       2      76 ..      67     140 ..      66     154 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.1e-09
   TIGR01628   2 SlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmw 76 
                 S+yvG++d +     L  +F++ g++  v +  +  t +  gYaYv f + +  e Al  ln +  kg+ ++++ 
  MMETSP1174-20130828|1488_1  67 SIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENAL-LLNDSIFKGRELKVAV 140
                 7777777777777777777777777777777667777777777777777777777777.4555666666666654 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.9e-09     2e-06     109     180 ..      69     140 ..      60     149 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.9e-09
   TIGR01645 109 vvGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgr 180
                  vG + +e k d l+  f+  G i  + +  +p t+k +g+a+ve    ea   al  +n  ++ Gr+lkv  
  MMETSP1174-20130828|1488_1  69 YVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEfADVEAVENAL-LLNDSIFKGRELKVAV 140
                 39*******************************************63345555555.68999********983 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.1e-08   1.1e-05      85     173 ..      61     148 ..      18     154 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.1e-08
   TIGR01661  85 dsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPss 173
                  s+ ++ +yv  +  +   +el++ f+  G i    il++  t+  +G  ++ f   e  ++a   ln ++ +g   +++vk  n P+ 
  MMETSP1174-20130828|1488_1  61 GSVEDTSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENA-LLLNDSIFKGRELKVAVKRVNFPGM 148
                 456777888888888888888888888888888888888888888888888888765555555.4688888888888888888888875 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.1e-07   0.00026     274     360 ..      43     128 ..      18     146 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.1e-07
   TIGR01642 274 knsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnG 360
                 +  +in ++   ++++ +++ ++  +y+g + ++ k d ++    s G +    ++ +  tG+ +Gya++e+ d    + A+  Ln 
  MMETSP1174-20130828|1488_1  43 VAKEINSNTAPASAAAVGGSVEDTSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALL-LND 128
                 4556666666667788888899999**************************************************99999875.444 PP

>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00016     0.085      29      62 ..      13      46 ..       3      51 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
   TIGR03042 29 tyspedlekiqrqveeieaakdrldeLkslvakk 62
                + +++++e ++r v+e+e+ +++l+eL+++vak+
  MMETSP1174-20130828|1488_1 13 ADEEKEIEDMKRRVQEMEEEAEKLKELQESVAKE 46
                567899*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       422  (0.102877); expected 82.0 (0.02)
Passed bias filter:                      338  (0.0823988); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 494.19
//
Query:       MMETSP1174-20130828|1497_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|1505_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|1509_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|1513_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 408.74
//
Query:       MMETSP1174-20130828|1518_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-20   68.2   0.0    1.2e-19   67.9   0.0    1.0  1  TIGR00344 alaS: alanine--tRNA ligase
    7.2e-18   62.0   0.0    9.8e-18   61.6   0.0    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   5.9e-23   1.2e-19     480     685 ..      57     273 ..      29     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 5.9e-23
   TIGR00344 480 qeavviLdktvfYaesGGqegDkGylikddakvrve..dvqk...angvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaalkkv.lgehvkQaGslveakklrlDfshkravtkeelkkvEdlvneq....ilenlqvkvelmdleeakkk..galalfgeky..gekvRvvsvgdvsvelCgGtHvenTgeiglfkIvkeegiaaGv 685
                  ++ +++d+t+f +++GGq +D G++++dd +v++e  +v     +n v+ h + +      ++ + +++id++rR +++  Hsa Hl+ +a+ +      v  +G   ++    +     +++ ++e k + +  n++    i +++++ + +m  e+a++        f+  +  + +vR+v + ++    CgGtHv++T+++  f+++  + +++G 
  MMETSP1174-20130828|1518_1  57 TKVELVFDQTPFHPQGGGQPTDIGTITSDDGSVSLEvfHVSFsfdTNVVTHHCMLMSPTPPTLNATYTLSIDAARRENLSAFHSAGHLVDSAIYRLgYSMLVPKKGYHFTD-GPYVEYGNGKEIDQAERKTIVSRLNQEfetlIDQDIPTTICMMVKEDAEAElnRTANNFDFSVfrDPQVRIVGIANFKC-PCGGTHVASTSDLRGFEVTGIK-MKKGD 273
                 46789**********************888776544115543341444455555566677899*****************************9764245678888876654.4567888888888888887777777643333778888888888777776541144555888888899*********998.5**************9987653.45555 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   4.8e-21   9.8e-18     524     719 ..      59     266 ..      48     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 4.8e-21
   TIGR03683 524 nevvldktlfYpegGGqpaDtGvlkaedkk..vevvdvqkv..gdvilHkveeek...lkegeevkgeideerRlrlmrhHtatHvllaaarkvlGeHvwqagaqkdtdkarlDitHykriseeeikeiErlane....ivmenkpvkvkildrneAeekyG..fklyqGGvppgkeiRvveiedvdveaCgGtHlkntgeiglikilk 719
                  e+v d+t f p+gGGqp+D+G+++ +d++  +ev +v      +v+ H++   +   ++  ++ +  id+ rR +l   H+a H++ +a+ ++  + +        td   ++    k+i++ e k i +  n+    ++ +++p+++ ++ +++Ae++     + ++  v  + ++R+v i ++    CgGtH+++t+++  + ++ 
  MMETSP1174-20130828|1518_1  59 VELVFDQTPFHPQGGGQPTDIGTITSDDGSvsLEVFHVSFSfdTNVVTHHCMLMSptpPTLNATYTLSIDAARRENLSAFHSAGHLVDSAIYRLGYSMLVPKKGYHFTDGPYVEYGNGKEIDQAERKTIVSRLNQefetLIDQDIPTTICMMVKEDAEAELNrtANNFDFSVFRDPQVRIVGIANFKC-PCGGTHVASTSDLRGFEVTG 266
                 579************************998567999997542378999*998665445667888999********************999887533444444455677888999999999999998887766664222278899999999999998888765116679999**************765.7**********988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 789.13
//
Query:       MMETSP1174-20130828|1523_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 822.99
//
Query:       MMETSP1174-20130828|1537_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|1541_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|1542_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|1543_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|1551_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 129.12
//
Query:       MMETSP1174-20130828|1546_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 472.96
//
Query:       MMETSP1174-20130828|1553_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   11.6   1.8       0.12   10.8   1.3    1.5  1  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   2.9e-05      0.12      18      47 ..      19      48 ..      10      58 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.9e-05
   TIGR02419 18 laaarakkrveaasllvCeeCgepIPeaRr 47
                l+ + ++  +++     C  Cg++IP++ r
  MMETSP1174-20130828|1553_1 19 LKSHKETPACKTWPPKSCVSCGKNIPARQR 48
                55555555555555678*********9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|1558_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.27s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 179.37
//
Query:       MMETSP1174-20130828|1555_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-19   65.9   4.7    5.2e-19   65.9   3.2    2.1  2  TIGR00012 L29: ribosomal protein L29
  ------ inclusion threshold ------
      0.058   11.2   2.2      0.071   10.9   0.1    2.2  2  TIGR01565 homeo_ZF_HD: homeobox domain, ZF-HD class


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   3.2   2.5e-22   5.2e-19       1      55 [.      25      80 ..      25      81 .. 0.98
   2 ?   -0.7   0.5      0.15   3.2e+02      29      47 ..      94     113 ..      82     113 .. 0.70

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 2.5e-22
   TIGR00012  1 elrekskeELakklkelKkeLfeLRfqkatgqle.kphrIrqvRrdIARllTvlre 55
                elr+k+k++L+k+l+elK+eL +LR+ k+tg+++ k+++I+ vR+ IAR++Tv ++
  MMETSP1174-20130828|1555_1 25 ELRNKQKAQLLKQLEELKTELGQLRVAKVTGGAQsKLAKIKVVRKSIARVMTVFNQ 80
                9****************************************************998 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.15
   TIGR00012  29 atgqle.kphrIrqvRrdIA 47 
                 ++  l    ++ r +Rr++A
  MMETSP1174-20130828|1555_1  94 KMIPLDlRVKKTRAIRRRLA 113
                 56666666777788888877 PP

>> TIGR01565  homeo_ZF_HD: homeobox domain, ZF-HD class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.5e-05     0.071       3      21 ..      73      91 ..      71     108 .. 0.86
   2 ?   -1.3   0.1      0.23   4.8e+02      13      23 ..     130     140 ..     119     141 .] 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.5e-05
   TIGR01565  3 rkktKFtaEQkekmrdyAe 21
                r  t F++ Qk+kmr++ +
  MMETSP1174-20130828|1555_1 73 RVMTVFNQTQKKKMREFSA 91
                66799************75 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.23
   TIGR01565  13 kekmrdyAekl 23 
                    mr yA k+
  MMETSP1174-20130828|1555_1 130 NFPMRRYAVKA 140
                 55699999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|1559_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.59
# Mc/sec: 219.24
//
Query:       MMETSP1174-20130828|1567_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|1563_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.59
# Mc/sec: 760.62
//
Query:       MMETSP1174-20130828|1568_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.59
# Mc/sec: 2346.72
//
Query:       MMETSP1174-20130828|1574_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|1576_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1174-20130828|1577_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 279.98
//
Query:       MMETSP1174-20130828|1578_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 267.86
//
Query:       MMETSP1174-20130828|1580_1  [L=1619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.7    2.4   5.7         13    1.7   4.0    1.2  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   4.0    0.0033        13     429     546 ..     163     280 ..     145     293 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0033
   TIGR00840 429 eelhlr...lldhllagiedisGqighdklrdklnkfdkkylkkvlirrnspksskivavakklelkqaielveegllsvvasnPepstserilkalssedkeeirdilstnlrkprqrlk 546
                 e+lh++    ++ ++a+++ ++ +i+ + + +   +  + y kk+ +++n+   +++  +  k+e+k a + ++    + +  n +   +e+   + s ++ e++r+   + +++ +++++
  MMETSP1174-20130828|1580_1 163 EHLHIErqaDMEKMNAAVDRLAAEIAAQTTAEEVANVTIDYSKKIRSANNQLSLERQKCMQTKKEMKRAQDSAAAE-REKILCN-ANLLVEEV-TRISADELEQVREDSAEEIESAQEKVR 280
                 4444321115888999**********************************999999999999*****999998888.4444443.34444443.566666666666665555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:01.32
# Mc/sec: 1618.87
//
Query:       MMETSP1174-20130828|1584_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 561.90
//
Query:       MMETSP1174-20130828|1589_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|1591_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   17.9   2.6    0.00043   17.5   1.8    1.4  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
      0.012   12.9   2.3      0.022   11.9   1.6    1.4  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.8   2.1e-07   0.00043      26      69 ..      92     137 ..      48     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-07
   TIGR00599  26 slRChvCkdffkaPvltsCsHtFCslCiR..rcLseepkCPlCrae 69 
                 +l C +C +  +     +C+H FC  Ci   r   ++  CPlCr +
  MMETSP1174-20130828|1591_1  92 LLICAICLEPPEDTAELPCGHEFCKACIDalRKFGVQKACPLCRKP 137
                 68899999999999999***********633567799******975 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.6   1.1e-05     0.022      26      54 ..     110     139 ..     107     147 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.1e-05
   TIGR00570  26 CghtlCesCvdllfvrGs.gsCpeCdtpLr 54 
                 Cgh +C +C+d l   G   +Cp C +pL 
  MMETSP1174-20130828|1591_1 110 CGHEFCKACIDALRKFGVqKACPLCRKPLP 139
                 **************9996257*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 820.81
//
Query:       MMETSP1174-20130828|1593_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 510.93
//
Query:       MMETSP1174-20130828|1599_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|1600_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|1597_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1174-20130828|1602_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|1603_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 453.16
//
Query:       MMETSP1174-20130828|1604_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|1605_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 685.61
//
Query:       MMETSP1174-20130828|1612_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|1613_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|1615_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1708.72
//
Query:       MMETSP1174-20130828|1618_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 256.21
//
Query:       MMETSP1174-20130828|1624_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|1625_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|1629_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|1633_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   16.4   0.0     0.0015   15.9   0.0    1.2  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
      0.003   15.1   0.0     0.0048   14.4   0.0    1.2  1  TIGR00455 apsK: adenylylsulfate kinase
  ------ inclusion threshold ------
      0.025   11.5   0.1      0.035   11.1   0.1    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
      0.026   11.6   0.1      0.035   11.2   0.1    1.1  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY


Domain annotation for each model (and alignments):
>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06    0.0015       2      38 ..     152     188 ..     151     196 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-06
   TIGR03574   2 iiltGlPgvGkstfskelakklseknidviilgtdll 38 
                 ++l GlPg+Gkst++ ++ + l+  + +v+  g+d  
  MMETSP1174-20130828|1633_1 152 LVLRGLPGSGKSTLAARFHQALTSGGSEVVSCGADQF 188
                 89********************************976 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.6e-06    0.0048      17      51 ..     148     182 ..     137     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.6e-06
   TIGR00455  17 ksvvlWltGlsgsGkstianalekkLeekglrvev 51 
                  +vvl l Gl gsGkst+a   +++L++ g +v  
  MMETSP1174-20130828|1633_1 148 GGVVLVLRGLPGSGKSTLAARFHQALTSGGSEVVS 182
                 4899**********************999887765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.4e-05     0.035      36      66 ..     151     181 ..     130     201 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.4e-05
   TIGR00750  36 vvGltGvPGaGkstlveklieelrrrGlkva 66 
                 v+ l G+PG Gkstl  ++ + l   G  v 
  MMETSP1174-20130828|1633_1 151 VLVLRGLPGSGKSTLAARFHQALTSGGSEVV 181
                 56689******************99999885 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.4e-05     0.035      80     122 ..     150     193 ..     137     203 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.4e-05
   TIGR00064  80 nvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTF.rAaA 122
                 +v++l G+ G+GK t  a+  + l++ g +v+   +D F  A+A
  MMETSP1174-20130828|1633_1 150 VVLVLRGLPGSGKSTLAARFHQALTSGGSEVVSCGADQFfEAGA 193
                 69999***************************999998625665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.99
# Mc/sec: 327.97
//
Query:       MMETSP1174-20130828|1635_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   13.5   0.0       0.88    7.1   0.0    2.2  2  TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00708  cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0015       6.2      94     129 ..      27      61 ..      11      69 .. 0.77
   2 !    7.1   0.0   0.00021      0.88      98     127 ..     170     198 ..     100     208 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0015
   TIGR00708  94 kevlasseydlvlLDeltvalkfgyLdveevvevlq 129
                  +  +ss yd    De+t+++kfg++ v  v++   
  MMETSP1174-20130828|1635_1  27 TREYRSSTYDAA-SDEVTLTVKFGFVSVVMVLDQAA 61 
                 556667777754.6*************999988655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00021
   TIGR00708  98 asseydlvlLDeltvalkfgyLdveevvev 127
                  s+ yd    De+t+++kfg+L+++ v++ 
  MMETSP1174-20130828|1635_1 170 SSTTYDA-AADEITMTVKFGILKINFVLDQ 198
                 5556664.36***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1235.90
//
Query:       MMETSP1174-20130828|1642_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.35s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|1643_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|1649_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|1652_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 359.97
//
Query:       MMETSP1174-20130828|1662_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 208.25
//
Query:       MMETSP1174-20130828|1664_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1104.80
//
Query:       MMETSP1174-20130828|1670_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 474.34
//
Query:       MMETSP1174-20130828|1679_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|1681_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|1690_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   83.7   0.5    3.4e-24   83.3   0.4    1.2  1  TIGR00060 L18_bact: ribosomal protein L18


Domain annotation for each model (and alignments):
>> TIGR00060  L18_bact: ribosomal protein L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.4   8.3e-28   3.4e-24      12     113 ..      50     154 ..      42     155 .] 0.86

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 8.3e-28
   TIGR00060  12 irkklretgeanrprlvvfrsnrhiyaqviddsksevlasastlekklkltgnkdaakkvGklvAerllkkgikdvvfDrgG....ykYHGrvaalAeaaReaGln 113
                 +r+k  +++ + r rl++frsn+hiyaqvi+d ++ +l ++++ + +++   nk+ ak vG+++ e +++kg++++ +Dr+     y YHGr++al e++Re+ ++
  MMETSP1174-20130828|1690_1  50 LRTKRVANNGNGRFRLTIFRSNEHIYAQVINDIEGRTLLAVNSKNLNIN-GSNKEGAKTVGQALGEAAKEKGLDKLFYDRESanhkYMYHGRIEALVEGIREKEIA 154
                 444444456678******************************8888888.99****************************75344478**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|1700_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.4    5.1  11.6        5.6    5.2   0.1    2.3  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0014       5.6      22      47 ..       9      34 ..       4      39 .. 0.68
   2 ?    1.9   5.3     0.016        64      27      39 ..      78      90 ..      50     100 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0014
   TIGR02811 22 aaagavaaatgrvasasaaaepsepe 47
                a a+a+aa+ + +  as+   +s+p+
  MMETSP1174-20130828|1700_1  9 ASAAAAAAVEPGLCCASERPSDSQPD 34
                45666677777778888888887775 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.016
   TIGR02811 27 vaaatgrvasasa 39
                vaaa+  va+a++
  MMETSP1174-20130828|1700_1 78 VAAAVAAVAAAAT 90
                3333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 438.54
//
Query:       MMETSP1174-20130828|1710_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1174-20130828|1709_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 407.61
//
Query:       MMETSP1174-20130828|1705_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    9.2   4.4       0.21    8.6   0.0    2.2  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   2.5     0.042   1.7e+02      93     141 ..     415     461 ..     403     479 .. 0.56
   2 ?    8.6   0.0   5.1e-05      0.21      17      76 ..     496     554 ..     484     572 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.042
   TIGR00601  93 saptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsae 141
                 +a+t+t  at+a++a++++++  ++       ++ +t+t+++++ + + 
  MMETSP1174-20130828|1705_1 415 AAATAT--ATAAATATATATTKYGTLMGRARGQQGTTTTTTTTPVGHGG 461
                 333333..45555555555555555555555555555555555544444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 5.1e-05
   TIGR00601  17 lepdetvkelKekiesekgkdayevaqqkLiyaGkiLs.Ddktvkeykikekdfvvvmvsk 76 
                 +++d++v  lK k+ +  + d +  +q+ L y G  L  Dd t++e+++k +  v + +s 
  MMETSP1174-20130828|1705_1 496 VSSDDKVGLLKLKLWQVMN-D-VSPQQMILFYDGEELGdDDLTLAECRVKAEALVYLKLSS 554
                 7899************999.5.555788899***99961568********99998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.59
# Mc/sec: 1384.77
//
Query:       MMETSP1174-20130828|1716_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 761.48
//
Query:       MMETSP1174-20130828|1718_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 216.46
//
Query:       MMETSP1174-20130828|1721_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 163.42
//
Query:       MMETSP1174-20130828|1720_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.8   2.4      0.018   12.7   1.7    1.5  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
  ------ inclusion threshold ------
      0.036   12.6   0.5      0.068   11.8   0.4    1.4  1  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.7     9e-06     0.018      36     148 ..      45     165 ..      43     168 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9e-06
   TIGR03927  36 iEkntellqgeetelekelftpeeqkkikkkkkkekkeqeelkdqLfsenatesntvkktkkqLFsseyeqtsssseste.......eeetektss..illlvliaglillliagiyflirk 148
                 i+ +++l ++ ete  ++   + + ++++++ +   k  +e  + L s+++ +s+t+ + ++q + s +  t+    s +       ee+t++ +s     +++++ l +++i+g++   rk
  MMETSP1174-20130828|1720_1  45 IDADETLSSEVETEISEDVAVDADATDATEDTEEVGKGTAESNSALQSTKQGKSTTKSQSIEQDGDSGAS-TMEGMPSFSshsvklaEEDTSSEGSsnLSMMGFGGILAVAGIVGLVSFLRK 165
                 5667777788888888877777777777777777777766666666554444444444444443322222.222221111233446644444444400445666677777777777766666 PP

>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   3.3e-05     0.068       9      33 ..     138     166 ..     133     167 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.3e-05
   TIGR01167   9 snslllllGl....lllglaglllrkrkk 33 
                 ++s+l+++G+    +++g+ gl+++ rk+
  MMETSP1174-20130828|1720_1 138 GSSNLSMMGFggilAVAGIVGLVSFLRKR 166
                 44555555554456666667777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 513.61
//
Query:       MMETSP1174-20130828|1723_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 714.09
//
Query:       MMETSP1174-20130828|1726_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|1725_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-71  238.5   1.4    1.7e-71  238.2   1.0    1.1  1  TIGR00761 argB: acetylglutamate kinase
    7.9e-28   95.4   1.5    1.1e-27   94.9   1.0    1.1  1  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase
    1.9e-09   34.8   2.8    4.2e-09   33.7   1.9    1.6  1  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
    3.5e-09   34.0   0.4    8.6e-08   29.4   0.1    2.1  2  TIGR00746 arcC: carbamate kinase
      3e-08   31.0   2.0    4.8e-08   30.3   0.2    1.9  2  TIGR01027 proB: glutamate 5-kinase
    1.1e-07   29.2   0.8    2.7e-06   24.6   0.0    2.2  2  TIGR00657 asp_kinases: aspartate kinase
  ------ inclusion threshold ------
      0.022   12.2   0.2       0.29    8.5   0.0    2.3  2  TIGR02076 pyrH_arch: putative uridylate kinase


Domain annotation for each model (and alignments):
>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.2   1.0     3e-74   1.7e-71       1     231 []      68     301 ..      68     301 .. 0.97

  Alignments for each domain:
  == domain 1    score: 238.2 bits;  conditional E-value: 3e-74
   TIGR00761   1 tiViKiGGaais..elleelakdiaklrkegiklvivHGGgpeinelleklgievefvnglRvTdketlevvemvligkvnkelvallekhgikavGltgkDgqlltaekldkedlgyvGeikkvnkelleallkagiipviaslal...deegqllNvnaDtaAaelAaaleAekLvlLtdvaGilegdkksliseleleeieqlikqavikgGmipKveaalealesgvkkvvi 231
                 ++V+K+GG+a+   e++ ++a+d+  l++  i  v+vHGGgpei+++lekl+i+++f +glRvTd +t+ev+emvl g++nk+ v +++++g  a+Gl+gkD  l++a+ +  e lg+vG+  ++n + l++ll++  ipvia++++   d++ +++N+naDtaA+++A+al+A++L lLtdv+G+l+ +k+ li+el++++++ + + + i+gGmipK+e a++a+++gv +++i
  MMETSP1174-20130828|1725_1  68 VVVVKYGGHAMGskEARASFASDLSTLQAASIDCVVVHGGGPEIKTMLEKLEIPTRFEQGLRVTDSATVEVAEMVLSGTINKRTVHEISQAGGTAIGLSGKDSGLIKAKPVRPE-LGLVGTPVEINVAFLRSLLDQKLIPVIAPIGVgigDDSSSTYNINADTAAGAIAEALGADRLQLLTDVPGVLTSEKQ-LIDELSPSQVAVMTEDGTITGGMIPKLETAVSAVKGGVGEAII 301
                 58*********88899*************************************************************************************************9.******************************9844458999**********************************555.***************************************9998 PP

>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   1.0   1.9e-30   1.1e-27      12     278 ..      61     325 ..      54     326 .] 0.86

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 1.9e-30
   TIGR01890  12 inahrdktlvvglggelvedkn.lgklvadiallhslGvrlvlvhGarpqieerlakrgrtthyvrGlrvtdeaslelvke.aaGelrlaiearlsmslantpmagsrlsvvsGnfvtarPiGvveGvdyehtGevrkidaegirrlldersivllsPlgfsv...tGeifnlamedvatsvaiklkadklillteedGildadGklvaelsaqeveslver..leeettarllsaavkalrgGvarshlvsyaedGallqelftrdGiGtlvs 278
                 + ++++k +vv  gg+++ +k+  + +++d++ l++  +  v+vhG  p i+  l+k ++ t++ +Glrvtd a++e+++   +G+++++    +s++      ++  ls     ++ a+P+    G      G+   i+++ +r lld++ i +++P+g  +   +  ++n++++  a  +a +l+ad+l llt ++G+l ++ +l+ els+++v+ + e   + ++     l++av a++gGv  + ++++++  a+l +lf  +  Gt v+
  MMETSP1174-20130828|1725_1  61 VSEYQGKVVVVKYGGHAMGSKEaRASFASDLSTLQAASIDCVVVHGGGPEIKTMLEKLEIPTRFEQGLRVTDSATVEVAEMvLSGTINKRTVHEISQA----GGTAIGLSGKDSGLIKAKPVRPELG----LVGTPVEINVAFLRSLLDQKLIPVIAPIGVGIgddSSSTYNINADTAAGAIAEALGADRLQLLTDVPGVLTSEKQLIDELSPSQVAVMTEDgtITGG-MIPKLETAVSAVKGGVGEAIILDGRQPHAVLVDLFGSKSPGTRVT 325
                 67889*************87651578***************************************************986516788877777666665....33333344455669*****986555....689999***********************9763336789**********************************************999886213334.47789*************************************986 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   1.9   7.2e-12   4.2e-09       2     193 ..      67     260 ..      66     273 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 7.2e-12
   TIGR00656   2 eliVqKFGGtsvgsserikkaakivlkelkegkkvvVVvSAmskvtdelvelael.lkll..eaisdeisprerdelvsvGEllssallssalrelgvkaealdgkeagilTddefg.....nAkikelateerLlelLeegiivvvaGF.iGateeGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvyttDPrvv 193
                 +++V+K+GG ++gs+e++   a+      + ++   VVv   + +  +++e  e+  ++     + d  +  + ++++s G ++  + + + + + g  a+ l+gk+ g++  +          ++ e+++   L +lL+++ i+v+a   +G   +   T       D++A ++a+al Adr ++ TDV+Gv+t+  +++
  MMETSP1174-20130828|1725_1  67 KVVVVKYGGHAMGSKEARASFASDLSTL-QAASIDCVVVHGGGPEIKTMLEKLEIpTRFEqgLRVTDSATVEVAEMVLS-G-TINKRTV-HEISQAGGTAIGLSGKDSGLIKAKPVRpelglVGTPVEINV-AFLRSLLDQKLIPVIAPIgVGIGDDSSSTY--NINADTAAGAIAEALGADRLQLLTDVPGVLTSEKQLI 260
                 68**************999988887665.66666667777777777777777763122333344556666666666666.3.4444444.55778888999999999999877654311111345555666.99*************964345544444443..3469***************************987665 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016       9.7      29      58 ..      85     114 ..      67     148 .. 0.73
   2 !   29.4   0.1   1.5e-10   8.6e-08     204     293 ..     221     305 ..     187     326 .] 0.76

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.016
   TIGR00746  29 ekaakqlvklakrgyelvithGngPqvGal 58 
                 ++ a++l +l +++   v++hG gP + ++
  MMETSP1174-20130828|1725_1  85 ASFASDLSTLQAASIDCVVVHGGGPEIKTM 114
                 445677788888888888888888887655 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.5e-10
   TIGR00746 204 veaviDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleevkveeleelakdgefaaGsmgPkveaaiefvesrgkkaiitsle 293
                 +   i+ D a+  +ae ++aD l +ltdv  v     + +++ + e++++ ++ +++dg    G m Pk+e+a+  v+ +  +aii    
  MMETSP1174-20130828|1725_1 221 STYNINADTAAGAIAEALGADRLQLLTDVPGVL----TSEKQLIDELSPSQVAVMTEDGTI-TGGMIPKLETAVSAVKGGVGEAIILDGR 305
                 4556999************************98....5688899************88765.688*************999999996554 PP

>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.14        84      41     251 ..      68     124 ..      50     154 .. 0.52
   2 !   30.3   0.2   8.3e-11   4.8e-08     132     250 ..     217     323 ..     193     326 .] 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.14
   TIGR01027  41 vvivsSGavaaGleaLglperpkklaekQalaaVGQgrLmklyeklfsqyglkvaQiLLtradlskrerylNarntleellelgvvpivNENDtvaveeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsr......agveviiasgekpekiadlledaavgtlf 251
                 vv+v  G+ a+G                                                                                                                                                               +K + a+ As+      a ++ ++++g   ++i ++le+ ++ t f
  MMETSP1174-20130828|1725_1  68 VVVVKYGGHAMG---------------------------------------------------------------------------------------------------------------------------------------------------------------SKEARASFASDlstlqaASIDCVVVHGGG-PEIKTMLEKLEIPTRF 124
                 333333333333...............................................................................................................................................................33333333322111111344555555544.3455555555555555 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 8.3e-11
   TIGR01027 132 NDtvaveeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsragv.eviiasgekp.ekiadlledaavgtl 250
                  D+ ++ +i+    Dt +  +a  ++Ad L lltdv g+ +++       +l   ++e++ ++ av ++ g+   TGGm  Kle+a  A + gv e+ii+ g++p   ++dl   ++ gt 
  MMETSP1174-20130828|1725_1 217 DDSSSTYNIN---ADTAAGAIAEALGADRLQLLTDVPGVLTSEK------QL---IDELSPSQVAVMTEDGT--ITGGMIPKLETAVSAVKGGVgEAIILDGRQPhAVLVDLFGSKSPGTR 323
                 5666666664...599999***********************99......55...55666666777777655..6*******************668999999994557788888888876 PP

>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.012         7       3      39 ..      68     104 ..      66     111 .. 0.87
   2 !   24.6   0.0   4.5e-09   2.7e-06     194     223 ..     227     256 ..     137     273 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.012
   TIGR00657   3 liVqKFGGtSvgnverikkvakivkkekekgnqvvVV 39 
                 ++V+K+GG  +g+ e     a  ++  ++   + vVV
  MMETSP1174-20130828|1725_1  68 VVVVKYGGHAMGSKEARASFASDLSTLQAASIDCVVV 104
                 79************99999998888888888777777 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.5e-09
   TIGR00657 194 SDltAallAaalkAdeveiytDVdGiytaD 223
                  D+ A ++A+al+Ad++++ tDV+G++t  
  MMETSP1174-20130828|1725_1 227 ADTAAGAIAEALGADRLQLLTDVPGVLTSE 256
                 6**************************975 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.071        41       2      45 ..      70     110 ..      68     149 .. 0.84
   2 ?    8.5   0.0    0.0005      0.29     118     208 ..     227     310 ..     219     325 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.071
   TIGR02076   2 vislgGsvlseeeidaekikefakilkklkde.lkvavvvGGGkv 45 
                 v++ gG+ + ++    e   +fa+ l+ l+ +  + +vv GGG  
  MMETSP1174-20130828|1725_1  70 VVKYGGHAMGSK----EARASFASDLSTLQAAsIDCVVVHGGGPE 110
                 778888888877....67778888888888887889999999975 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0005
   TIGR02076 118 TdavaallaEaleadllinitnvdgvYdkDPkkykdakkfkklkaeelveiveksslkaGssevvDllaakiierskikvivvngedpenl 208
                  d+ a ++aEal ad l  +t+v gv ++        + +++l+++++  + e+  + +G   +   +a++ ++    ++i+++g++p+ +
  MMETSP1174-20130828|1725_1 227 ADTAAGAIAEALGADRLQLLTDVPGVLTSE------KQLIDELSPSQVAVMTEDGTITGGMI-PKLETAVSAVKGGVGEAIILDGRQPHAV 310
                 689999********************9864......35688888888888777777777743.3334666666666666777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 811.86
//
Query:       MMETSP1174-20130828|1728_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1174-20130828|1731_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 592.17
//
Query:       MMETSP1174-20130828|1730_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 854.05
//
Query:       MMETSP1174-20130828|1732_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 1707.06
//
Query:       MMETSP1174-20130828|1736_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|1733_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.28s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 960.16
//
Query:       MMETSP1174-20130828|1737_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1174-20130828|1734_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1263.90
//
Query:       MMETSP1174-20130828|1738_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|1739_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-119  396.4  16.1    8.6e-63  210.8   0.1    3.0  3  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.7e-66  223.0  49.2    9.3e-34  115.0   8.1    2.9  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    2.9e-61  205.6  42.5    3.5e-34  116.1   3.6    3.8  3  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    1.2e-59  200.4   6.8    2.5e-28   97.2   0.1    4.0  4  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    9.7e-14   47.8   6.3    8.9e-08   28.1   0.8    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    6.6e-12   42.5   8.4    4.2e-07   26.6   0.3    2.4  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    3.2e-07   26.0   8.2    1.2e-05   20.8   0.9    2.1  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
     0.0023   14.8   3.0       0.27    8.0   0.1    2.9  3  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
  ------ inclusion threshold ------
      0.011   14.0   0.7      0.011   14.0   0.5    4.9  3  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
       0.06   11.2   3.7       0.52    8.2   0.3    2.9  2  TIGR03077 not_gcvH: glycine cleavage protein H-like protein
      0.086   10.7   2.7        1.6    6.7   0.2    2.6  2  TIGR00527 gcvH: glycine cleavage system H protein
      0.099    9.3   6.1       0.94    6.1   0.2    3.0  3  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   1.7   1.1e-21   3.8e-19      11      97 ..       1      91 [.       1     103 [. 0.83
   2 !  127.2   1.8   5.7e-40     2e-37       1     181 [.     105     272 ..     105     282 .. 0.86
   3 !  210.8   0.1   2.5e-65   8.6e-63     135     434 ..     279     583 ..     268     586 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.1e-21
   TIGR01349 11 meeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessas.....ap 97
                m+eG++++w ++ GDk+++Gd i+ +e DkA +dves e gy+a+i++peg     v+  +av+v+ ++d++++  + ++ +s +     a+
  MMETSP1174-20130828|1739_1  1 MTEGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGES-ASVGDTVAVIVSSEADIAKVGDSATPPESETcvvtsAA 91
                9**************************************************87.9*****************88777666555443333322 PP

  == domain 2    score: 127.2 bits;  conditional E-value: 5.7e-40
   TIGR01349   1 kikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpk 181
                 +++mPaLs tm eG++++w k  G+kv+ Gd i+ +e DkA +dves eegyla il peg     v+  +avl+e +++++ av+        sa  p++ a+ ++ ++a+   ++a+a  a++++++a +   e++ r++as  Akk+A+ +g+dL+ v+GsGPn Riv  D+    + 
  MMETSP1174-20130828|1739_1 105 EVTMPALSSTMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGS-AAVGDCVAVLAETEAEIA-AVA--------SAGAPSSAAPAAPAPAAP--AAAAPAAAAPAPAAPAAVVVPEGE-RVVASGYAKKVASAAGVDLRTVRGSGPNSRIVADDVLLTASG 272
                 589**********************************************************98.89************9999.333........344455555533444455..577888889999999998888888.***********************************9876665 PP

  == domain 3    score: 210.8 bits;  conditional E-value: 2.5e-65
   TIGR01349 135 keskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpk.......kkesaqeaaaaktpatk.....kaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaeervklsvnDlivkAvalAlrevPevnsswtd.dvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPie 434
                 + + + ++a+P+A++l k kg+dLs v+G+G  gR++  D+  +          ++++a ++ aa++pa++     ++ a   +     vp++ + k + k  +e++  +P + +s ++  d   +l ++l+        + v  l+ kA+a+ l + P vn+++    +i++++ +++++Ava + GlitP +r++++ ++ ++ +e k+l++kA+e++L+p e+++GtftisnlGm+g+++F ai+ p   +ila++ s  ++v +++    l v + ++vt+++DHR i Ga +A+flk+l +llen  e
  MMETSP1174-20130828|1739_1 279 TPAPGVVAATPMARTLSKAKGVDLSTVAGTGNFGRVTEDDVLAALGMprknappAPAPAAAGPAAAGPAASsaapkPPPAAAAPVPEGLVPMDGMQKAVVKN-MEATLGVPIFRVSRSIATDSFDALYAKLKPKG-----VTVSALLAKACAMVLEKHPIVNAAYDPsGAIKYNEDINVAMAVALDGGLITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAGSAPTVVAQANG--HLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLENNTE 583
                 4455679***********************************9976654554443444444445555555544433222222233334699*******9987.68999**********************99887.....8999*********************99678999999*************************************************************************************9998877766..79999*******************************9765 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7  22.1   1.3e-35   4.4e-33      15     322 ..       2     288 ..       1     289 [. 0.82
   2 !  115.0   8.1   2.7e-36   9.3e-34     262     571 ..     281     581 ..     274     585 .. 0.78

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 1.3e-35
   TIGR02927  15 teGtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikaeeddtvevGgvlaiiGeegeagsedaeapaepeeepaeeppkeepkkaaeapaeaaaqaqgsgeatevempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseekpeaaepkaekkeepkpepkaeekapaakaatektaadsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeakeaaaaeaaaaa 322
                 teG + +wl +vGd +e  + ++ v +dk d ++ s  +G + +i ++e ++  vG  +a+i   +ea  ++       + ++ +e++       ++a + + a a++s+++ ev+mp+l  ++ eG + +wlk +G++ve+ + ++ v +dk d ++ s   G l  il++e     vG  +a + + + a     e  + + + a+s  +p+a++p a        +p+a+++apaa+aa   ++ + +   +   +k+a   Gvdl +v+G+G   ri   dvl +a++   a++++a    aa 
  MMETSP1174-20130828|1739_1   2 TEGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAVIVS-SEADIAKV-----GDSATPPESETCVV---TSAAT-TVAVADSSSAGLEVTMPALSSTMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDCVAVLAE-TEA-----EIAAVASAGAPSSAAPAAPAPAAPAA----AAPAAAAPAPAAPAAVVVPEGERVV-ASGYAKKVASAAGVDLRTVRGSGPNSRIVADDVLLTASGMPPAAHTPAPGVVAAT 288
                 9*************************************************************75.44443333.....22222223322222...33333.567889999**************************************************************************9996.333.....33344556666666777666655433....3566777899999988877766553.456789*********************************9999998887777665 PP

  == domain 2    score: 115.0 bits;  conditional E-value: 2.7e-36
   TIGR02927 262 adsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaea.aeeakeaaaaeaaaaapaapaaakkapepeka...klrGttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrleeg 571
                 a ++   tp+ r l+k kGvdls+v GtG  Gr+   dvlaa     ++a  a+a  aa  a+a paa+++ap+p  a    +      ++ +++ + k++  +l +         +      al a+ k+     +Gv  t   +++ka    l  hp vna+y + +  + y +  ++++av  + Gl++p i+  + +++  + +  +dl  +a++++l p e   gtfti+n+G  G  +   il p   +il +      p v+ +++G   +++ + + +++t dhr + Gada+ fl  + + le+ 
  MMETSP1174-20130828|1739_1 281 APGVVAATPMARTLSKAKGVDLSTVAGTGNFGRVTEDDVLAALGMpRKNAPPAPAPAAAGPAAAGPAASSAAPKPPPAaaaPVPEGLVPMDGMQKAVVKNMEATLGVPIF-RVSRSIATDSFDALYAKLKP-----KGV--TVSALLAKACAMVLEKHPIVNAAY-DPSGAIKYNEDINVAMAVALDGGLITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAG--SAPTVVAQANG--HLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLENN 581
                 4567778**********************************975414444455555555555555666666655544400044444555666666666666666655432.22223333344444444444.....455..666789******************.66779***********************************************************************9999999999999997754..67999997776..5777788889*******************999999975 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   5.1   7.7e-13   2.6e-10      12      96 ..       2      84 ..       1      98 [. 0.81
   2 !   61.1  12.5   4.7e-20   1.6e-17     139     322 ..      88     270 ..      77     281 .. 0.84
   3 !  116.1   3.6     1e-36   3.5e-34     275     581 ..     277     580 ..     270     586 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 7.7e-13
   TIGR01348 12 eevevievlvkvGdkveaeqslitlesdkasmevPsskaGivkeikvkvGdtlkeGavilllevadgaaddaeekaeaasaaaga 96
                 e+++++ lv+vGdk+e + +++ +esdka m+v s ++G + +i +  G+  ++G+ ++++ +++++   a+   +a+++ + +
  MMETSP1174-20130828|1739_1  2 TEGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAVIVSSEADI--AKVGDSATPPESET 84
                5899*********************************************************99996555..55555555555432 PP

  == domain 2    score: 61.1 bits;  conditional E-value: 4.7e-20
   TIGR01348 139 daakkeaaPaeaqasgvkevkvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvl...evegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfv 322
                 ++a  + a a++ +s++ ev++P + + + ++++++ l  +G++v+ + +++ +esdka ++v +   G +  +    G +  +Gd + vl   e+e aa a+a ap +a +aa+apaa a +a+aa+a+a+a ++a       ++++v  a+   +++a   Gvdl  v+g+g++ ri+ +dv  ++
  MMETSP1174-20130828|1739_1  88 TSAATTVAVADS-SSAGLEVTMPALSStMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDCVAVLaetEAEIAAVASAGAPSSAAPAAPAPAAPAAAAPAAAAPAPAAPAA---VVVPEGERV-VASGYAKKVASAAGVDLRTVRGSGPNSRIVADDVLLTA 270
                 334444455555.67789********9888**********************************************************9993223445677778899999999999999998888888888887777...556677777.8********************************97665 PP

  == domain 3    score: 116.1 bits;  conditional E-value: 1e-36
   TIGR01348 275 antendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeavkraeaaaaaaaggipg.......llPlPkvdfskfGevee..velsrikkisganlarnWvmiPh..vtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGvsksalePvWdgk.efePrlllPlslsydhrvidGadaarflkylsellad 581
                 a+t  +  v  a+P+ r l++  Gvdls v gtg+ Gr++++dv +  + + k+a+ a+a aa+g +        ++P P         v e  v++ +++k+ ++n++ + + +P   v +   +d   ++al  +++           +tv a+l ka+a +l+k P  na+ d++g ++ + + +n+ +av    Gl+ P i+  +   i  + re  dl  ka++k+l + e + ++ftis+lG  G ++f  i+     +il ++ sa   v + + ++     + ++++ dhr i Gadaa flk l++ll++
  MMETSP1174-20130828|1739_1 277 AHTPAPGVV-AATPMARTLSKAKGVDLSTVAGTGNFGRVTEDDVLAALGMPRKNAPPAPAPAAAGPAAagpaassAAPKP--PPAAAAPVPEglVPMDGMQKAVVKNMEAT-LGVPIfrVSRSIATD--SFDALYAKLK--------PKGVTVSALLAKACAMVLEKHPIVNAAYDPSG-AIKYNEDINVAMAVALDGGLITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAGSAPTVVAQANgHLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLEN 580
                 455566667.9**************************************9998887766655555444000000144544..34444555543489************865.456640044433333..3455544444........2347999***********************99.6899****************************************************************************9999*****999988887666444444455799**********************9986 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   1.4     4e-13   1.4e-10      12     101 ..       1      90 [.       1     103 [. 0.79
   2 !   56.4   0.0   1.9e-18   6.4e-16       2     146 ..     105     267 ..     104     282 .. 0.69
   3 !    8.0   0.0   0.00089       0.3     110     167 ..     284     341 ..     269     353 .. 0.80
   4 !   97.2   0.1   7.5e-31   2.5e-28     236     399 ..     418     583 ..     407     587 .] 0.92

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 4e-13
   TIGR01347  12 vteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakae 101
                 +te+++++w  +vGd+++ +++i+ +e Dk +++v+s ++G ++++   eg+   +g+++a++  s+a  ++  ++++  ++e+ + +++
  MMETSP1174-20130828|1739_1   1 MTEGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAVIVSSEADIAKVGDSATPPESETCVVTSA 90 
                 59*************************************************************965554444444444444444333333 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 1.9e-18
   TIGR01347   2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaelee.............ssaaaeaasekskeekeekaaakaekakeaaekk.................kalspaarklakeegidleavektkktgrvtkediv 146
                 e+ +P+l+  + e+++++w k +G++v+ +++i+ +e Dk +++v+s ++G l+++l+ eg    +g+ +a+l+e                          ++ +++a a a++a++a +++                   +s  a+k+a+ +g+dl +v+++++++r+  +d+ 
  MMETSP1174-20130828|1739_1 105 EVTMPALSSTMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDCVAVLAEteaeiaavasagaP------------SSAAPAAPAPAAPAAAAPAAAapapaapaavvvpegerVVASGYAKKVASAAGVDLRTVRGSGPNSRIVADDVL 267
                 7999**********************************************************************965554443332221............22222111111111111111111233334444445544666777777777788888888888877777777665 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00089
   TIGR01347 110 kkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaa 167
                   a++p ar l k +g+dl++v++t++ grvt++d+ ++   + ++a +a+a aa+ +
  MMETSP1174-20130828|1739_1 284 VVAATPMARTLSKAKGVDLSTVAGTGNFGRVTEDDVLAALGMPRKNAPPAPAPAAAGP 341
                 46789*********************************99998666666665555544 PP

  == domain 4    score: 97.2 bits;  conditional E-value: 7.5e-31
   TIGR01347 236 ffvkavvealkefPevnaeidgd.divykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaikeRPvav.ngkieirPmmYlaLsYDhRliDGkeavtFLvkikelledper 399
                 + +ka++  l++ P vna+ d +  i y++ +++++av+ d GL++P +R ++++ +  + +e k+l +ka+e++la  + + GtFti+n G+fG      i+ p   +iL + +     va  ng++ +   m + ++ DhR i G +a  FL+++ +lle+ ++
  MMETSP1174-20130828|1739_1 418 LLAKACAMVLEKHPIVNAAYDPSgAIKYNEDINVAMAVALDGGLITPTIRKCNTMDIYSVGREWKDLVTKAKEKRLAPIEYNSGTFTISNLGMFGVSSFEAILPPGTGSILAIAGSAPTVVAQaNGHLGVVKKMTVTITCDHRHIYGADAAMFLKDLADLLENNTE 583
                 679******************86156689999***************************************************************98889999999999****998888777526*************************************9765 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.8   2.6e-10   8.9e-08    1140    1200 ..       3      63 ..       1      64 [. 0.96
   2 !   22.7   0.2   1.1e-08   3.8e-06    1133    1200 ..     109     177 ..      78     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.6e-10
   TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                  +g++ + lv+vgd++e+gd +++ve+ k+++ v++ ++G +++i + eG+  + Gd+++v+
  MMETSP1174-20130828|1739_1    3 EGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAVI 63  
                  689999****************************************************997 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.1e-08
   TIGR02712 1133 vavese.lagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                   a++s  ++g++ + l  +g++ve gd +++ve+ k+++ v++ ++G +++il+ eG   + Gd+++vl
  MMETSP1174-20130828|1739_1  109 PALSSTmVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDCVAVL 177 
                  44444416899*******************************************************997 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.3   1.2e-09   4.2e-07     525     581 ..       3      59 ..       1      60 [. 0.96
   2 !   19.3   1.8     2e-07   6.8e-05     480     581 ..      65     173 ..      58     174 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.2e-09
   TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgev 581
                  G+iv+  v+ Gd++++G++++v+e+ k ++++++ ++G +++i++ +G++ +vg++
  MMETSP1174-20130828|1739_1   3 EGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDT 59 
                 59****************************************************997 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2e-07
   TIGR01108 480 egkaeevkvseskevskleasa.aaaksagtvaakakastdvtap......laGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgev 581
                 + +a+  kv +s +  + e+ + ++a+++ +va ++ a+ +vt p      + G+iv+     G++v+ G++++v+e+ k ++++++ ++G ++ il  +G + avg+ 
  MMETSP1174-20130828|1739_1  65 SSEADIAKVGDSATPPESETCVvTSAATTVAVADSSSAGLEVTMPalsstmVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDC 173
                 45555555555554444444430334444444455555666665433333378************************************************99999875 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.9   3.6e-08   1.2e-05    1082    1141 ..       3      62 ..       1      64 [. 0.94
   2 !    9.4   0.6    0.0001     0.034    1079    1141 ..     114     176 ..      86     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.6e-08
   TIGR01235 1082 pGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllv 1141
                   G +++ +v++G+k+e Gd ++v+e+ k ++ v++ ++G ++++ + +Ge+    d ++v
  MMETSP1174-20130828|1739_1    3 EGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAV 62  
                  599***********************************************9999998776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0001
   TIGR01235 1079 apmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllv 1141
                  + + G +++ +   G+kve Gd ++v+e+ k ++ v++ ++G ++ +l  +G +    d ++v
  MMETSP1174-20130828|1739_1  114 TMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEGGSAAVGDCVAV 176 
                  445799*****************************************9999988888887766 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00078      0.27      34      71 ..       3      40 ..       1      45 [. 0.91
   2 ?   -0.5   0.0       0.3     1e+02      34     167 ..      40      65 ..      38      73 .. 0.57
   3 !    5.9   0.1    0.0033       1.1       6      73 ..      89     156 ..      85     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00078
   TIGR01730 34 aGkvtkisvkeGqkVkkGqlLakldddelqlaldaaka 71
                +Gk+ + +v+ G+k+  G+ ++ +++d++ + ++++++
  MMETSP1174-20130828|1739_1  3 EGKIVQWLVNVGDKIESGDAIMVVESDKADMDVESFES 40
                7****************************999888776 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
   TIGR01730  34 aGkvtkisvkeGqkVkkGqlLakldddelqlaldaakaqlaaaeaqlelakkqleRaerLvkrsavsqaelddakaaleaaqaqlkaakaslasaranLskteirAPfdGvigkrlvevgayvsagtelvtiqd 167
                 +                                                                                                            G+i+++ + +g+  s+g++++ i++
  MMETSP1174-20130828|1739_1  40 S------------------------------------------------------------------------------------------------------------GYIAQIIIPEGESASVGDTVAVIVS 65 
                 4............................................................................................................5555555555555555555555544 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0033
   TIGR01730   6 vesetleesrefpgsleavdeaeiaaevaGkvtkisvkeGqkVkkGqlLakldddelqlaldaakaql 73 
                  ++ t+++ ++ ++ le ++ a  +  v+Gk+ + +   G+kV  G+ ++ +++d++ + ++++++ +
  MMETSP1174-20130828|1739_1  89 SAATTVAVADSSSAGLEVTMPALSSTMVEGKIVQWLKGIGEKVEIGDAIMVVESDKADMDVESFEEGY 156
                 5566777777778888888888888899*****************************99998887665 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   3.2e-05     0.011     102     154 ..      11      63 ..       7      65 .. 0.92
   2 ?    0.9   2.2      0.35   1.2e+02     104     142 ..     127     165 ..      65     178 .. 0.77
   3 ?    0.1   1.7      0.63   2.2e+02      36      73 ..     318     355 ..     273     377 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-05
   TIGR00531 102 vevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivi 154
                 v+vGdk++ gd++ +ve  k   ++e   +g + +i++ +g+    g+++ vi
  MMETSP1174-20130828|1739_1  11 VNVGDKIESGDAIMVVESDKADMDVESFESGYIAQIIIPEGESASVGDTVAVI 63 
                 99****************************************99988887665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.35
   TIGR00531 104 vGdkvkkgdvvciveAmklmneieaevagkvveilvedg 142
                 +G+kv+ gd++ +ve  k   ++e   +g + +il  +g
  MMETSP1174-20130828|1739_1 127 IGEKVEIGDAIMVVESDKADMDVESFEEGYLAAILTPEG 165
                 789999999999999999888888888888888877665 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.63
   TIGR00531  36 aaaakksvlqqaaapvvaqvpavasaavpaaavaaeaa 73 
                 +  a+  + ++ a p++a++ a ++aa paa  aa+ +
  MMETSP1174-20130828|1739_1 318 DVLAALGMPRKNAPPAPAPAAAGPAAAGPAASSAAPKP 355
                 55555556666666777777777778888888777764 PP

>> TIGR03077  not_gcvH: glycine cleavage protein H-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.3    0.0015      0.52      37      74 ..      10      47 ..       4      73 .. 0.89
   2 ?    2.7   0.1      0.08        27      37      65 ..     124     152 ..     101     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0015
   TIGR03077 37 lpsvgslikegevlvilessksaievlspvsgevievn 74
                l  vg  i  g+ ++++es k+ ++v s  sg + ++ 
  MMETSP1174-20130828|1739_1 10 LVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQII 47
                6689****************************998875 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.08
   TIGR03077  37 lpsvgslikegevlvilessksaievlsp 65 
                 l  +g  +  g+ ++++es k+ ++v s 
  MMETSP1174-20130828|1739_1 124 LKGIGEKVEIGDAIMVVESDKADMDVESF 152
                 67899999999**********99999775 PP

>> TIGR00527  gcvH: glycine cleavage system H protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0046       1.6      43      78 ..      10      45 ..       4      68 .. 0.89
   2 ?    3.6   0.1     0.042        14      43      74 ..     124     155 ..      95     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0046
   TIGR00527 43 lPevGaevsaeeslgsvesvkaaselyaPvdGtvve 78
                l +vG++++ ++ + +ves ka  ++ +  +G + +
  MMETSP1174-20130828|1739_1 10 LVNVGDKIESGDAIMVVESDKADMDVESFESGYIAQ 45
                6689******************99998887777765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.042
   TIGR00527  43 lPevGaevsaeeslgsvesvkaaselyaPvdG 74 
                 l  +G++v+ ++ + +ves ka  ++ +  +G
  MMETSP1174-20130828|1739_1 124 LKGIGEKVEIGDAIMVVESDKADMDVESFEEG 155
                 5678******************9988766555 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0047       1.6      65      95 ..       2      32 ..       1      37 [. 0.85
   2 ?    6.1   0.2    0.0027      0.94      59      93 ..      33      67 ..      25      76 .. 0.87
   3 ?    0.5   0.1      0.14        46      31      89 ..     116     177 ..     100     186 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0047
   TIGR03794 65 gsGqvidlkvkvGdqvkkgdvvarieqpelr 95
                + G++++  v+vGd+++ gd + ++e+ + +
  MMETSP1174-20130828|1739_1  2 TEGKIVQWLVNVGDKIESGDAIMVVESDKAD 32
                679********************99987665 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0027
   TIGR03794 59 vtiqskgsGqvidlkvkvGdqvkkgdvvarieqpe 93
                ++++s  sG + ++ + +G++ + gd+va+i + e
  MMETSP1174-20130828|1739_1 33 MDVESFESGYIAQIIIPEGESASVGDTVAVIVSSE 67
                579999************************98776 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.14
   TIGR03794  31 vaallWgifGsipirVe.GkGilikssgv..vtiqskgsGqvidlkvkvGdqvkkgdvvari 89 
                 v + +   +  i ++Ve G  i++ +s    ++++s   G + ++   +G +   gd va++
  MMETSP1174-20130828|1739_1 116 VEGKIVQWLKGIGEKVEiGDAIMVVESDKadMDVESFEEGYLAAILTPEGGSAAVGDCVAVL 177
                 33333333333444443344444333332113445555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.78u 0.23s 00:00:01.01 Elapsed: 00:00:00.59
# Mc/sec: 1313.18
//
Query:       MMETSP1174-20130828|1741_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 1475.57
//
Query:       MMETSP1174-20130828|1745_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|1746_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|1749_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 542.90
//
Query:       MMETSP1174-20130828|1751_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.0   0.1     0.0051   14.4   0.1    1.4  1  TIGR01017 rpsD_bact: ribosomal protein S4


Domain annotation for each model (and alignments):
>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.2e-06    0.0051      87     178 ..      24     120 ..      15     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
   TIGR01017  87 llesRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpgdlisikeks.....kklklvkealelkeersipsylevdkkklkgkvlr 178
                 l+e+   n+vy++ +a+  ++   +v H + +vng +v+     v++ +l+s+  k+     + + +v +++e+k+e+ + + ++  kkk++ ++ +
  MMETSP1174-20130828|1751_1  24 LMENSHENLVYKAKLAEQAERFDEMVEHMKEVVNGAHVEGHELSVEERNLLSVAYKNvigsrRASWRVLSSIESKGEADKLTIIQEYKKKVEDELIQ 120
                 6788889******************************************999987752221133334888888888888777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1071.44
//
Query:       MMETSP1174-20130828|1752_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-48  160.7   0.0    6.2e-48  160.4   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    7.5e-36  121.8   0.0    9.3e-36  121.5   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.1e-22   78.3   0.1    1.6e-22   77.7   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    3.4e-22   76.9   0.0      5e-22   76.3   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.1e-19   67.8   0.1    3.1e-19   67.2   0.1    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      4e-19   67.0   0.0    8.4e-19   66.0   0.0    1.5  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.5e-18   64.8   0.0    2.1e-18   64.3   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.8e-18   64.9   0.0    2.5e-18   64.4   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.8e-18   63.8   0.0    3.8e-18   63.4   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      5e-18   63.2   0.0    8.1e-18   62.5   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    6.8e-18   62.9   0.1      1e-17   62.3   0.1    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.2e-17   60.2   0.1    5.8e-17   59.8   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.9e-16   56.1   0.0      1e-15   55.5   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.7e-16   56.0   0.1    1.4e-15   55.5   0.1    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.3e-15   55.4   0.0    1.8e-15   54.9   0.0    1.1  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      2e-15   54.7   0.0    3.4e-15   54.0   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-15   53.8   0.0    4.3e-15   53.4   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      6e-15   53.4   0.1    1.1e-14   52.5   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.3e-14   52.0   0.1    2.1e-14   51.4   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.5e-14   50.6   0.0    3.3e-14   50.2   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      3e-14   50.1   0.0    3.9e-14   49.7   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.2e-13   49.0   0.1    2.2e-13   48.1   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.4e-13   47.3   0.0    3.4e-13   46.8   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.5e-13   46.5   0.0    7.8e-13   46.0   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.4e-13   46.5   0.1      1e-12   46.0   0.1    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    9.4e-13   45.9   0.1    2.4e-12   44.6   0.0    1.6  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.6e-12   44.1   0.0    5.7e-12   43.4   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.9e-12   43.3   0.0    5.3e-12   42.9   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    8.5e-12   42.9   0.1    1.4e-11   42.2   0.1    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    9.6e-12   42.9   0.1    1.6e-11   42.2   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.5e-11   42.0   0.0    2.2e-11   41.4   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.7e-11   41.3   0.0    3.9e-11   40.8   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.9e-11   40.9   0.0    5.9e-11   39.9   0.0    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.7e-11   39.5   0.0    8.7e-11   38.9   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
      9e-11   39.2   0.1    1.3e-10   38.6   0.1    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.4e-10   38.1   0.0    3.9e-10   37.4   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.5e-10   37.1   0.0    8.7e-10   36.4   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    7.9e-10   35.5   0.0      1e-09   35.1   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-09   35.9   0.1    1.7e-09   35.3   0.1    1.2  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.2e-09   35.6   0.0    1.9e-09   35.0   0.0    1.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.8e-09   34.3   0.0    2.4e-09   33.8   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    2.7e-09   34.0   0.0    3.9e-09   33.5   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    6.1e-09   32.7   0.0    8.6e-09   32.2   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.8e-08   29.1   0.0    4.6e-08   28.8   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    9.9e-08   28.8   0.1    1.4e-07   28.3   0.1    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.3e-07   27.0   0.0    4.7e-07   26.5   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.3e-07   26.9   0.1    4.7e-07   26.4   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.1e-07   25.8   0.0    7.9e-07   25.5   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.2e-07   25.5   0.0    1.1e-06   25.2   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      2e-06   25.2   0.1    3.1e-06   24.6   0.0    1.2  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.1e-06   25.2   0.0      3e-06   24.7   0.0    1.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.8e-05   20.2   0.0    2.3e-05   19.8   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00018   17.1   0.0    0.00024   16.7   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
  ------ inclusion threshold ------
      0.013   12.0   0.0      0.018   11.5   0.0    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      0.024   11.0   0.0      0.034   10.5   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   8.3e-50   6.2e-48    2047    2248 ..       3     214 ..       1     225 [. 0.88

  Alignments for each domain:
  == domain 1    score: 160.4 bits;  conditional E-value: 8.3e-50
   TIGR01257 2047 iekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkgafqclgtiqhlkskfgdgyivtmki...kspkddl.lpdlnp.....veqffqgnfpgsvqrerhynllqfqvssssl..arifqllvshkdsllieeysvtqttldqvfvnf 2248
                  + +v + +i+ l ls y  +la   sgg krkl  aialig p lvlldep++g+dp +rr lw+t++  + e+ravvlt+hsmee+ealctr+ imvkg +++lgt qhlk kfg gy + +k+   k+ + dl lp  +p     v  +++g f  +        ll f ++  s+   + f+ l + k sl i +y ++q tl+qvfv+ 
  MMETSP1174-20130828|1752_1    3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM-ENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKAKFGSGYELLIKLgtsKASRGDLnLPCSSPqriekVTALIDGLFQQASLISNNGGLLTFTIPKESMkvGQAFEALETSKKSLGISDYLIAQPTLEQVFVKT 214 
                  56788999***********************************************************9875.99**********************************************99998333444556657765553322277889999999999999999******9777522799***************************975 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   1.2e-37   9.3e-36     103     300 ..       5     214 ..       1     216 [. 0.79

  Alignments for each domain:
  == domain 1    score: 121.5 bits;  conditional E-value: 1.2e-37
   TIGR01188 103 eraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelk...........kevsllaaeltesll.eleavevdsdkvklkveeadetvkeileavk..rnkikissislkepsledvflkl 300
                 e +e  ++++el   ++k +k++sgGm+r+l +a++li +P+++ LDEP  GLDp +rr++wd + +   e+ +++ltth +eea++l+ r++i+ kG++   +tp+ LK++ g+    + +  + + +           + + ++++ l++ l  +++ ++ +    ++++++++ +v +++ea++  ++ + is+  + +p+le+vf+k 
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM-ENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKAKFGSGYELLIKLGTSKASrgdlnlpcsspQ-RIEKVTALIDGLFqQASLISNNGGLLTFTIPKESMKVGQAFEALEtsKKSLGISDYLIAQPTLEQVFVKT 214
                 5566778899*****************************************************877654.46799************************************666654333222222222344556666542.3333344444433255777788888899999999999999998752267899****************96 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.1   2.1e-24   1.6e-22     132     222 ..      23     112 ..       2     130 .. 0.88

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 2.1e-24
   TIGR01288 132 rvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                    +lsggmkr+l +a ali +p+l++ldep++gldp +r  +w+ l   +   ++++ltth meeae lc r+ ++ +g+  + g p+ l
  MMETSP1174-20130828|1752_1  23 LAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM-ENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 4569******************************************98876.56899************************9999999876 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   6.6e-24     5e-22     111     217 ..       8     112 ..       2     120 .. 0.93

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 6.6e-24
   TIGR01186 111 lealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdei 217
                   ++++++l  y+++  ++lsGGm++++ +a al  ePdl+l+de+ + ldP+ r +l d l+k     ++++v+ th ++ea  l+ ri i+ +G++  +GtP+++
  MMETSP1174-20130828|1752_1   8 ETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM--ENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 5578999*******************************************************9865..679*********************************975 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.1   4.2e-21   3.1e-19     110     224 ..       4     117 ..       1     123 [. 0.90

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 4.2e-21
   TIGR03864 110 eerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaaelaaead 224
                 +e +e+++++l+l+  +++ +++L+GG +r++ +a al+ eP+l+LlDe+++GLD+ sr++l +++ + +  e+ +v+ +th ++e ea   r+ ++ kG+++  G++++l+a+++
  MMETSP1174-20130828|1752_1   4 REVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM--ENRAVVLTTHSMEEAEALcTRIGIMVKGQLRVLGTPQHLKAKFG 117
                 56789999********************************************************999888..4557788********99626788***************998865 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.1e-20   8.4e-19     105     204 ..       7     105 ..       2     113 .. 0.90

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.1e-20
   TIGR03740 105 ieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelre.liksfpekGitvilsshilsevelladhiGiiseGklky 204
                 +e  ++ ++l+  + k akq+s Gmk++l +aial+ +P+l++ldeP+ GldP+  ++l + lik+++++  +v+l++h + e e l+  iGi+ +G+l+ 
  MMETSP1174-20130828|1752_1   7 VETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDtLIKTMENR--AVVLTTHSMEEAEALCTRIGIMVKGQLRV 105
                 567789999*************************************************976377777665..799***********************975 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   2.8e-20   2.1e-18     117     229 ..       5     114 ..       1     123 [. 0.91

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2.8e-20
   TIGR03258 117 ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
                 e v  ++  ++ls + ++l +qlsGG+++++ +a al+ +pd++lldep + ld   r ++ +    l + + + +v+  th  +ea +l  +i++m +G+l  lG+++ l  
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDT---LIKTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKA 114
                 5677788999************************************************999876...56778899**********************************9965 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   3.3e-20   2.5e-18     111     219 ..       4     112 ..       1     125 [. 0.90

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 3.3e-20
   TIGR03522 111 kkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleel 219
                 ++ ve  i++  l++ +hk   +ls G +++  +a al+ +P++++ldeP++GldP    ++ + + +  ++++v+l+th m e ealc r+ i+ kG++ +  + ++l
  MMETSP1174-20130828|1752_1   4 REVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 6779999*************************************************9999988777777789**************************98766666655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   5.1e-20   3.8e-18     141     252 ..       3     112 ..       1     120 [. 0.93

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 5.1e-20
   TIGR03415 141 rrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                 +r+ ve  ++ ++l+ +++k +++lsGGm++++ +a a+  e d++l+deP + ldP+ r +l d l++  +  ++++v+ +h ++ea  l +ri im +G++  lgtp+++
  MMETSP1174-20130828|1752_1   3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTME--NRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 578899999999*******************************************************98655..89*********************************986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.1e-19   8.1e-18     136     229 ..      18     111 ..       2     116 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 1.1e-19
   TIGR00972 136 dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteq 229
                    +k a +LsGG +++lc+a al  eP+++LlDeP++ LDp++ +++ +++ +  ++  +v+ th+m+ a+ +  ++ ++++G+l   g++++
  MMETSP1174-20130828|1752_1  18 PYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQH 111
                 45578899*******************************************9999******************************988887776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   1.4e-19     1e-17      92     195 ..       4     105 ..       1     115 [. 0.93

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.4e-19
   TIGR01184  92 reiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195
                 re+ve +i+ ++l+  ++k  +qlsggmk+++ +a al   p+l+lldep   ld ++r +l + l+k +e++  +v++ th ++ea  l+ r+ ++ +g    
  MMETSP1174-20130828|1752_1   4 REVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENR--AVVLTTHSMEEAEALCTRIGIMVKGQLRV 105
                 79******************************************************************99876..57999*****************9997655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   7.8e-19   5.8e-17     111     222 ..       3     112 ..       1     118 [. 0.90

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 7.8e-19
   TIGR03265 111 vaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLree.lkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 v+e ve+ ++ ++ls  ++k   qlsGG ++++ +a al+  P+l+LLDeP + LD   r +L    +k++ ++     ++ th  eea +l+ ri +m kg++  +gtP+ +
  MMETSP1174-20130828|1752_1   3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTlIKTMENRAV---VLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 67789999999***************************************************98762566666644...577****************************986 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.4e-17     1e-15     103     188 ..       2      86 ..       1      88 [. 0.94

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.4e-17
   TIGR01166 103 everrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 +v+++v+  ++++++s ++++++++lsgG k+++ +a a++ +pd++lldeP+agldp  +++l ++l k  e  + vv++th ++
  MMETSP1174-20130828|1752_1   2 RVREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTME-NRAVVLTTHSME 86 
                 7999**************************************************************9998765.5789*****876 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.8e-17   1.4e-15     121     229 ..       4     112 ..       1     116 [. 0.94

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.8e-17
   TIGR03411 121 kerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 +e +e+++++++L+  ++k a +Ls G k  L +++ l+ ep+l+llDeP aG+    +++  + l +  ++r+vv+  h me  ++l +++ ++ +G++ + G+ +++
  MMETSP1174-20130828|1752_1   4 REVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 6789999*******************************************************99999999*****************************9888876665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.4e-17   1.8e-15     107     220 ..       3     114 ..       1     125 [. 0.92

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.4e-17
   TIGR00968 107 ikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                 +++ ve  ++ ++l+ ++++  +qlsGG ++++ +a al  ep+++lldep + ld   r++l   l k  ++   + v+ th  eea  +  ri ++ kG++  +g+++++  
  MMETSP1174-20130828|1752_1   3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENR--AVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKA 114
                 67889999999****************************************************98888877765..5699*****************************99865 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   4.5e-17   3.4e-15     129     235 ..      10     114 ..       4     118 .. 0.91

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 4.5e-17
   TIGR02315 129 lLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldd 235
                 ++++++l+ +++k a+qLsGG + ++ +a al+ +p+l+l DEP a LDp s +++ d+l      ++ +v+++ H+++ a++ ++ri  + +g++   g++++l++
  MMETSP1174-20130828|1752_1  10 TIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLI--KTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKA 114
                 678999*****************************************************95..556677899****************9999999998888888765 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   5.7e-17   4.3e-15      79     189 ..       5     113 ..       1     121 [. 0.85

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 5.7e-17
   TIGR01187  79 ervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqle.lkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189
                 e v+  ++  +l+ + ++  +qlsGG ++++ +a a++ +P+++LlDep + LD   r ++    +k+++++   +vvl th  eea ++  ri+++ kG++   g+p+ + 
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTlIKTMENR---AVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLK 113
                 3345556667889999999***********************************988777655516777776...689******************************9875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.5e-16   1.1e-14      94     200 ..       7     113 ..       4     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.5e-16
   TIGR03771  94 vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv.vllngrvvadgapdqlq 200
                 v+ ++++ +l+  +++   +lsGG ++++ va al  +p l+lldep +Gld  s+ +l + +++   e++a+++tth + ea a c r+ +++ g++   g+p++l+
  MMETSP1174-20130828|1752_1   7 VETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKT-MENRAVVLTTHSMEEAEALCTRIgIMVKGQLRVLGTPQHLK 113
                 677889999999999999*******************************************99985.6789******************967889999999***9997 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   2.8e-16   2.1e-14     113     221 ..       8     114 ..       2     122 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 2.8e-16
   TIGR02142 113 ekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevla 221
                 e+ i+ L +++  ++l+++LsGG k +  ++ Al+ +P+L+l+DeP a LD  +++++   L +  ++    +++  Hs++e + l  r+ ++ +G+++  g+++++ a
  MMETSP1174-20130828|1752_1   8 ETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMEN--RAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKA 114
                 56678899**************************************************9988666554..46899****************************999876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   4.5e-16   3.3e-14     468     529 ..      23      84 ..      16      85 .. 0.96

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 4.5e-16
   TIGR02868 468 ggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  +++lSGG++++l +A aL+ + +++lLDEP+++LD+  +++l ++L++++e+r+vvl th+
  MMETSP1174-20130828|1752_1  23 LAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHS 84 
                 5899*********************************************************7 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   5.3e-16   3.9e-14     602     687 ..      25     111 ..      18     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 5.3e-16
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrts.lLelvdriivldkGrivadGpkde 687
                 ++LSgG ++ + +a al+ +p+++lLDEP++ lD  s ++l ++L ++++++ +vl+tH ++    l++ri ++ kG++ + G+ ++
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEeAEALCTRIGIMVKGQLRVLGTPQH 111
                 79*********************************************************9862567************999887765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.9e-15   2.2e-13     107     211 ..       5     107 ..       2     109 .. 0.90

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 2.9e-15
   TIGR01277 107 ekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreeml.alvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                 e ve   +q+ ++ y ++l ++lsGG ++++ +a  l+ e  ++lldep + ldp  r+++  +l+k+    ++++++l ths+++a a  +++ ++ +G+++vl+
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWdTLIKT-M--ENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLG 107
                 667888899*************************************************9998355555.4..45689************************99875 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.6e-15   3.4e-13     422     515 ..      21     112 ..      12     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 4.6e-15
   TIGR03269 422 dklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeei 515
                 +kl+++ls G + ++ +a  li ep +v+ldep+  +dp++++++ ++++k+ e  +++ v+ +h m+    +c r+++m +G++  +G p+++
  MMETSP1174-20130828|1752_1  21 HKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTME--NRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 6899**********************************************9977..6889999***********************99999876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     1e-14   7.8e-13     456     522 ..      24      90 ..      10      96 .. 0.94

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1e-14
   TIGR02857 456 gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                 +++LSgG +++l +A al+ + +l+llDEP a LD+ +  ++ ++l + +e+r+v+l +H+ + ae+
  MMETSP1174-20130828|1752_1  24 AKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEA 90 
                 689*********************************************************9988765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   1.4e-14     1e-12     114     212 ..       3     100 ..       1     102 [. 0.89

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.4e-14
   TIGR02673 114 iqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                 +++ ve+++++++l+  +++l+++lsgG + +  +a a++ +P+l+l DeP   lD+   +++ d l ++ ++  +v+++th  e +e+  +r+ ++ k
  MMETSP1174-20130828|1752_1   3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMEN-RAVVLTTHSMEEAEALCTRIGIMVK 100
                 567899**********************************************************998887655.6899*****9988888777766655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.2e-14   2.4e-12     113     199 ..       5      90 ..       2      97 .. 0.91
   2 ?   -2.2   0.0       6.7     5e+02      85     139 ..     167     222 ..     135     226 .. 0.58

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 3.2e-14
   TIGR03608 113 kkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 + +++++++++l+ +++k   +lsgG k ++ +a +l+ e++l+l DEP + LD+ +r ++ + l +   e++ +++ tH++e ae+
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM-ENRAVVLTTHSMEEAEA 90 
                 5677899**********************************************************9975.6899*******987765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 6.7
   TIGR03608  85 faLlenetveenlelalklkkkskkekekkkke.vlekvglekklkkkiyelsgGe 139
                  +Ll     +e ++++ +++ +++++k+  + + ++ +  le+   k++ e sg e
  MMETSP1174-20130828|1752_1 167 GGLLTFTIPKESMKVGQAFEALETSKKSLGISDyLIAQPTLEQVFVKTVCEYSGEE 222
                 33333223355666666666666555554444314456666777777777777666 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   7.6e-14   5.7e-12     123     219 ..      18     112 ..       4     116 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 7.6e-14
   TIGR03410 123 emlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                   +++ + +LsGG + +l +a aL+ eP l+lLDeP+ G+ P   +++ +++   ++ ++ a++l  ++++ a +l  r+ ++ +G++   g+ ++l
  MMETSP1174-20130828|1752_1  18 PYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLI--KTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 567888999*********************************99999988874..4556789*************************9988877666 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   7.1e-14   5.3e-12     453     543 ..      25     115 ..      17     116 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 7.1e-14
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlkk 543
                 ++LsgG + ++ +a al g+P lv+LDeP a LD      l + l++  +++++v++     ++ +l  +i ++ +G+l+++G+ +++++k
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHLKAK 115
                 68********************************************9988877666655556777889****************9998876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   1.9e-13   1.4e-11     123     219 ..       8     103 ..       2     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.9e-13
   TIGR02982 123 eelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkmedGkl 219
                 e  ++++ l    ++ +++lsgG k+++ +a al+ +P+lvl deP a ld  s r++ + l k  ++   +++l th       ++ ri  m +G+l
  MMETSP1174-20130828|1752_1   8 ETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMEN--RAVVLTTHSMEeAEALCTRIGIMVKGQL 103
                 5667778888889999******************************************9999887665..5789999986514567888888888876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.2e-13   1.6e-11     115     216 .]       3     103 ..       1     103 [. 0.88

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.2e-13
   TIGR00960 115 ieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathdenlveskrkrvltlskGkl 216
                 ++e+v+++++++ l+  +++l +qlsgG ++++++a a++ +P l+l deP++ ld+   r++ + l +++++   +v+++th  +  e    r+  + kG+l
  MMETSP1174-20130828|1752_1   3 VREVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLiKTMEN--RAVVLTTHSMEEAEALCTRIGIMVKGQL 103
                 678999*********************************************************9865155554..478999**99988888888877777765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   2.9e-13   2.2e-11     121     204 ..      22     103 ..       4     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 2.9e-13
   TIGR02770 121 kypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 k + +lsGGm  ++ +a+al+ e+ l++ DeP++ lD v++ ++ ++l + +e+   +++l th +     l   + +m kG++
  MMETSP1174-20130828|1752_1  22 KLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMEN--RAVVLTTHSMEEAEALCTRIGIMVKGQL 103
                 56779******************************************9777665..689***********************97 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   5.2e-13   3.9e-11     137     229 ..      14     103 ..       2     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 5.2e-13
   TIGR02769 137 velrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 +el++   +kl +qlsGG  +++++a al  eP l++lde  + ld v + ++ + l k       a+++ th ++ ++ ++ r+ ++ +Gq+
  MMETSP1174-20130828|1752_1  14 LELSP-YKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIK--TMENRAVVLTTHSMEEAEALCTRIGIMVKGQL 103
                 55544.45799*****************************************9998855..5556799***********************97 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0     8e-13   5.9e-11     116     224 ..       5     112 ..       2     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 8e-13
   TIGR03873 116 evvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                 evv+ ++ + els + ++  + lsGG +++  +a al  eP l+lldeP   ld  ++ +l   + +   e+ +vv++ h ++ a ++c ++ ++ +G++   G+p+++
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKT-MENRAVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 79999*************************************************88888887665555.377889999**************************99985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.2e-12   8.7e-11     139     256 ..       5     114 ..       2     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.2e-12
   TIGR00955 139 erveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavk 256
                 e ve  +++l+L+  ++ +       k lSgG +++l +a  l+ +P l+++DEP +GLD +s  ++  +L k  +++  v+lt H    e   l ++i ++ +G+   lG+p+++  
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLA------KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRA-VVLTTHS-MEEAEALCTRIGIMVKGQLRVLGTPQHLKA 114
                 56777777777777766654......57*******************************************99877766.8888895.45677899******************9865 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   1.8e-12   1.3e-10     123     220 ..       9     104 ..       1     115 [. 0.84

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.8e-12
   TIGR02314 123 ellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsile.llkeinrrlgltillithemdvvkricdevavidkgeli 220
                   +  + ls  k+    +lsgg k+++ +a al  ep ++l de ++ ldp + + + + l+k ++   + +++l th m+    +c ++ ++ kg+l 
  MMETSP1174-20130828|1752_1   9 TTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDtLIKTME---NRAVVLTTHSMEEAEALCTRIGIMVKGQLR 104
                 45556678888888999**************************************99861555554...5578999********************985 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   5.3e-12   3.9e-10     124     212 ..       9      95 ..       2     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 5.3e-12
   TIGR02211 124 ellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl 212
                 + +++++l+   +k + +lsGG +++  +a al+ +P+lvl deP + ld  + +++++ l   ++ +n a+++ th +e a+ l  ++
  MMETSP1174-20130828|1752_1   9 TTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLI--KTMENRAVVLTTHSMEEAEALCTRI 95 
                 55677888888888999*****************************************9885..56778899******99998876555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.2e-11   8.7e-10     107     188 ..       6      86 ..       2      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.2e-11
   TIGR01189 107 tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                  ve+++++++Ls +++ +++qLs G kr+l +a  l+ +  l +LDEP + lD  + + l ++l + +++  +v+l+th   
  MMETSP1174-20130828|1752_1   6 VVETTIHQLELSPYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENR-AVVLTTHSME 86 
                 5788999***************************************************9999999887765.6888999754 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.4e-11     1e-09     592     683 ..      25     118 ..      17     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.4e-11
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkivesGkheellak.eg 683
                  +lsGG ++++ +a al+++P +++lde  + ld  s + + + l +  ++r+v+  +h ++   a + ri ++ kG++   G+ + l ak ++
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKfGS 118
                 57***********************************************************876544************999999888877444 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   2.3e-11   1.7e-09     138     218 ..      23     105 ..       2     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.3e-11
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrel.glaviivth.lavarllaqrllvmkqGrvve 218
                   +++sGGm+++l +a +l+ +p lv++ ep+ Gl  v  r l   +l++ + + av++ th +  a  l+ r+ +m +G++  
  MMETSP1174-20130828|1752_1  23 LAKQLSGGMKRKLCVAIALIGEPDLVLLdEPSAGLDPVSRRNLWD-TLIKTMeNRAVVLTTHsMEEAEALCTRIGIMVKGQLRV 105
                 6789*******************************9999888755.55554416899999******************999754 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   2.5e-11   1.9e-09     138     234 ..      18     112 ..       6     117 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 2.5e-11
   TIGR03005 138 dkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                   +++l  qlsGG k+++ +a al  +p ++l+de+++ ldp    ++ + l +  +++  +++l th m  a+ ++ r+  + kG++   G p+++
  MMETSP1174-20130828|1752_1  18 PYKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENR--AVVLTTHSMEEAEALCTRIGIMVKGQLRVLGTPQHL 112
                 55678899***********************************9999999998876554..67899***********************99999876 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   3.3e-11   2.4e-09     616     705 ..      25     117 ..      20     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 3.3e-11
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmeked 705
                 +qlsgG k ++ +A AL+ +P +++LDe  + LD  + + l +   k++++r+v+l +h ++ +e  + +i ++ kg+++ lGt ++L++k +
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDtlIKTMENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKFG 117
                 79*********************************9999888878899**************9996599******************998866 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.2e-11   3.9e-09     474     565 ..      24     116 ..      17     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 5.2e-11
   TIGR02204 474 gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGriveqGthaeLiakg 565
                 + +LsGG k+++ +a a++ +  ++LLde  + Ld  s +++   l + m++r+ ++  h +      + ri ++ kG++   Gt ++L ak 
  MMETSP1174-20130828|1752_1  24 AKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKF 116
                 579***********************************************************87754399**************999997764 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.1e-10   8.6e-09     468     561 ..      24     118 ..      19     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.1e-10
   TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGkiverGtheeLlarnGl 561
                 + +LsGG + +l +a al+ +  +++LDe  + LD  s R++ ++L + m++R  ++  h +   e    ri ++ +G++   Gt ++L a+ G 
  MMETSP1174-20130828|1752_1  24 AKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKFGS 118
                 568**********************************************************999886468999******9999999999888774 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   6.1e-10   4.6e-08    1353    1415 ..      26      88 ..       3     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 6.1e-10
   TIGR01271 1353 vlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveal 1415
                   ls g k+ +c+a +++    ++lldepsa ldpv+ + +  tl +++ n +v+l+ h +e  
  MMETSP1174-20130828|1752_1   26 QLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEA 88  
                  5899******************************************************99743 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.9e-09   1.4e-07     142     216 ..       6      83 ..       2      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.9e-09
   TIGR03719 142 kleiamdalrlpeedakv.eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke.y.kGtvvavth 216
                  +e++++ l l +  +k+ ++lsGG kr++ ++  l+ +Pdl+lldeP   ld  s   l   l +   + +vv+ th
  MMETSP1174-20130828|1752_1   6 VVETTIHQLELSPYKHKLaKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKtMeNRAVVLTTH 83 
                 578889999998776665278********************************9998877666544131346777777 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   6.3e-09   4.7e-07     587     680 ..      25     121 ..      21     125 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6.3e-09
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRivi..AHRLSTirn.adrilvleeGrvveqGsyeeLlakeGlfae 680
                 ++lSGG + +l +A al+  P ++l+DE    LD  + +   ++l k    R v+   H +   +  + ri ++ +G++   G+ ++L ak G  +e
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVltTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKFGSGYE 121
                 78*******************************************999888877633677766543499*******************999886555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.3e-09   4.7e-07     381     482 ..       5     104 ..       2     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 6.3e-09
   TIGR02633 381 kaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiy.klinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482
                 +++e++i++l++   +  l+  +lsGG ++k  +a  l+ +p +++ldep+ G+d  ++ +++  li+++ ++ v +   s e ae l  + r+ ++ +G+l+
  MMETSP1174-20130828|1752_1   5 EVVETTIHQLELSPYKHKLA-KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWdTLIKTMENRAVVLTTHSMEEAEAL--CTRIGIMVKGQLR 104
                 57788899999999988887.6899999999999999999999999999999999888888873578888888777777777777665..6677777777765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-08   7.9e-07     613     709 ..      24     124 ..       5     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.1e-08
   TIGR03796 613 ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRd.cdeiivlerGkvverGtHeellakega.YarLi 709
                 ++ lsGG + +l +A aL+ +P +++lDE  + LD+   +++ + l +   + ++++ +H +      c +i ++ +G++   Gt ++l+ak g  Y+ Li
  MMETSP1174-20130828|1752_1  24 AKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKtmENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKFGSgYELLI 124
                 5789**************************************99987622467889999*998765449********************997654276666 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.5e-08   1.1e-06     592     699 ..       9     116 ..       2     125 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.5e-08
   TIGR01193 592 ddieklplG.yqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk.lkdktiifvahrlsvakk.sdkiivldeGkiieqGshkellken 699
                 + i++l+l  y+ +l+    ++sgG k++l++a al+ + ++++lde ++ ld +  +++ + l+k ++++++++ +h ++ a+    +i ++ +G++   G+ ++l ++ 
  MMETSP1174-20130828|1752_1   9 TTIHQLELSpYKHKLA---KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKtMENRAVVLTTHSMEEAEAlCTRIGIMVKGQLRVLGTPQHLKAKF 116
                 5566666533666676...78*******************************************9748899*********9998636899999999887777777666554 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.2e-08   3.1e-06     128     216 ..       6      93 ..       2     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.2e-08
   TIGR02324 128 kakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelva 216
                  +++ +++l+++    +la    sGG k+++ +a ali +  ++LLdeP a Ld   r+   + + ++ +++a +++    ee+++l++
  MMETSP1174-20130828|1752_1   6 VVETTIHQLELSPYKHKLA-KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALCT 93 
                 5677788888888888888.899****************877889**********9999999888888888877777776777776665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     4e-08     3e-06     137     229 ..      19     109 ..       3     122 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4e-08
   TIGR01978 137 leRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                  + +l +  sGG k++  +   ++ eP+l++LDe  +GlD  + + + +++ k   e++a+++ th  +  e++  + + ++++G++   G  
  MMETSP1174-20130828|1752_1  19 YKHKLAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTM-ENRAVVLTTHSMEEAEALC-TRIGIMVKGQLRVLGTP 109
                 567888999********99999999***********************9998765.4789999***999888875.68899999988766655 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.1e-07   2.3e-05     760     861 ..      26     125 ..      19     159 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.1e-07
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv.dviivlsdgkisemgsyqelldrdgafaeflrt 861
                 +lsgg k+++ +a a+  + d+ lld+p + +d    + +++ +i     ++n++ +l th++         i ++ +g++  +g+ q+l ++ g+  e+l +
  MMETSP1174-20130828|1752_1  26 QLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKT---MENRAVVLTTHSMEEAEALcTRIGIMVKGQLRVLGTPQHLKAKFGSGYELLIK 125
                 58899999999999999999999999999999998888999998865...57888999999998765541556788899999999999988888887777765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.2e-06   0.00024     877     960 ..       6      83 ..       3      88 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.2e-06
   TIGR00956 877 yveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
                  ve+ i+ lel  y+  +       L+   +++l +++ L+ +P  l+ lDeP +GLD  +   +  +l k+ ++ +a++ t H
  MMETSP1174-20130828|1752_1   6 VVETTIHQLELSPYKHKLAKQ----LSGGMKRKLCVAIALIGEP-DLVLLDEPSAGLDPVSRRNLWDTLIKTMEN-RAVVLTTH 83 
                 578888888888888877655....44455789***********.6789************99999999999876.67777777 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024     0.018     470     571 ..      25     127 ..      18     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00024
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvrea.dlvlfldqgrliekgsfdeliqkdgrfakllrasg 571
                 ++lsgg +++l +a a++ +  +++lde ++ ld  +   + d++    +nr+  + +h +         + ++ +g+l   g+ + l  k g  ++ll + g
  MMETSP1174-20130828|1752_1  25 KQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRAVVLTTHSMEEAEALcTRIGIMVKGQLRVLGTPQHLKAKFGSGYELLIKLG 127
                 79********************************9999999999999999*****999998876553134557788888888999999888888888876555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00045     0.034     466     520 ..      23      77 ..       9      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00045
   TIGR01194 466 tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrG 520
                  + +ls G +++l +  a + e  ++llde +a  dp  +r +++ l+  +  r 
  MMETSP1174-20130828|1752_1  23 LAKQLSGGMKRKLCVAIALIGEPDLVLLDEPSAGLDPVSRRNLWDTLIKTMENRA 77 
                 5678*****************************************9998877653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        55  (0.0134081); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.64
# Mc/sec: 701.19
//
Query:       MMETSP1174-20130828|1755_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 311.12
//
Query:       MMETSP1174-20130828|1753_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1032.96
//
Query:       MMETSP1174-20130828|1756_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 619.62
//
Query:       MMETSP1174-20130828|1757_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 215.58
//
Query:       MMETSP1174-20130828|1754_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1536.08
//
Query:       MMETSP1174-20130828|1760_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-09   32.0   0.1    1.5e-08   31.3   0.0    1.3  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.7e-12   1.5e-08     575     650 ..       7      85 ..       1      87 [. 0.83

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 3.7e-12
   TIGR00575 575 ekveaeeksllagktfvltGtleklsrkeakeklealggkvassVskktdyvvage....kagsKlkkAkelgikilsee 650
                  k++a+ +++++g  ++++Gtl++  r+e++++++a ggk ass++k    +v  +     a++K++ A++ gi+i++e 
  MMETSP1174-20130828|1760_1   7 VKKAAAASEPFSGAVICMSGTLSEK-RSEIEARIKAGGGKCASSITKACTHLVTTSsefsTATKKVRDAQSKGIPIVEET 85 
                 4455555669*************76.**********************9999986522226999************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.60
# Mc/sec: 1440.88
//
Query:       MMETSP1174-20130828|1762_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.2   0.3      0.029   11.8   0.2    1.2  1  TIGR00790 fnt: formate/nitrite transporter


Domain annotation for each model (and alignments):
>> TIGR00790  fnt: formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   7.2e-06     0.029       6      56 ..      88     142 .]      83     142 .] 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-06
   TIGR00790   6 llkllvksilagvfialg...laavvttktaaelvdaglvklvggv.vFpiglil 56 
                   k++ ++i++g +i++g   + +v +     e++++gl+k+v g+   p+glil
  MMETSP1174-20130828|1762_1  88 FKKIFTLGIVSGFYIGFGgflAITVGANCPGLEKSNPGLQKMVLGAfGLPVGLIL 142
                 568899************85333333445567889********986258899886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1174-20130828|1763_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 148.49
//
Query:       MMETSP1174-20130828|1766_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|1770_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|1768_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|1767_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1148.91
//
Query:       MMETSP1174-20130828|1769_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1174-20130828|1771_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1484.88
//
Query:       MMETSP1174-20130828|1772_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1174-20130828|1774_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1052.14
//
Query:       MMETSP1174-20130828|1775_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    6.3  10.2        1.7    5.9   7.1    1.2  1  TIGR02223 ftsN: cell division protein FtsN


Domain annotation for each model (and alignments):
>> TIGR02223  ftsN: cell division protein FtsN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   7.1   0.00042       1.7     148     193 ..       5      85 ..       2      89 .] 0.55

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00042
   TIGR02223 148 vearkqtaekkkqkartaeakk...................................tkvetekkaskekeakkkqkalkk 193
                 vea+kq +++k ++ ++ae+ k                                   +kve+ k+a  +k  ++kq + +k
  MMETSP1174-20130828|1775_1   5 VEAPKQAETPKIEAPKQAETPKveapvfkldtpkveapkfeapkfeapkfdvpkfdiPKVEAPKQAETPKIEAPKQAETPK 85 
                 666666666666555777777777777777775555544444445554455545555566666665555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1174-20130828|1777_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.8   0.5     0.0089   13.4   0.1    2.0  2  TIGR03072 release_prfH: putative peptide chain release factor H
     0.0031   14.3   2.6       0.28    7.9   0.0    2.4  3  TIGR00020 prfB: peptide chain release factor 2
  ------ inclusion threshold ------
      0.031   11.0   4.3      0.033   10.9   0.0    2.0  2  TIGR00019 prfA: peptide chain release factor 1


Domain annotation for each model (and alignments):
>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   6.5e-06    0.0089     105     138 ..      38      72 ..      33     112 .. 0.80
   2 ?    0.3   0.1     0.066        91      12      39 ..     112     139 ..      91     153 .. 0.49

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.5e-06
   TIGR03072 105 edeirfetlrasGpGGqhvnktes.avRavhlasG 138
                 e+ + f  + + GpGGq vnk ++ av   h++s 
  MMETSP1174-20130828|1777_1  38 ENRLVFTFTPSQGPGGQNVNKVNTrAVARFHVPSA 72 
                 556777888899*********98769999999985 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.066
   TIGR03072  12 aecclavakalerlkreaakrkvkvevl 39 
                 +ec l  ++ ++    e ++r++  ++ 
  MMETSP1174-20130828|1777_1 112 VECLLKLKLLVAEAAVEPKERNLYTDIS 139
                 3444444444444444444444444444 PP

>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00021      0.28     231     267 ..      34      71 ..       2      75 .. 0.81
   2 !    5.9   0.5   0.00081       1.1     268     307 ..      96     133 ..      91     165 .. 0.70
   3 ?   -2.9   0.0      0.39   5.4e+02     122     139 ..     179     196 ..     173     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00021
   TIGR00020 231 ieikeedvridvyrasGaGGqhvnktds.avrithipt 267
                 i++ e+ +      + G+GGq+vnk ++ av   h+p 
  MMETSP1174-20130828|1777_1  34 IDVPENRLVFTFTPSQGPGGQNVNKVNTrAVARFHVPS 71 
                 7788888877777899*********9865888888885 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00081
   TIGR00020 268 givvqcqnersqlknkekalkllkakLyelelekeeaekk 307
                  ++v++q+ r+q +n+ + l  lk  + e  +e +  e++
  MMETSP1174-20130828|1777_1  96 ELIVSSQEHRTQRRNRVECLLKLKLLVAEAAVEPK--ERN 133
                 589***************98666555444444433..333 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.39
   TIGR00020 122 ydaknalltiqaGaGGte 139
                  d+ +a+l++  Ga G +
  MMETSP1174-20130828|1777_1 179 SDEGEAFLELALGAAGLD 196
                 6999**********9975 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05     0.033     217     253 ..      34      71 ..       2      87 .. 0.80
   2 ?    0.6   1.3     0.033        45     255     306 ..      97     147 ..      91     160 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
   TIGR00019 217 vkinpkdlridtyrssGaGGqhvnttds.avrithlPt 253
                 +++ ++ l      s G GGq+vn++++ av  +h+P 
  MMETSP1174-20130828|1777_1  34 IDVPENRLVFTFTPSQGPGGQNVNKVNTrAVARFHVPS 71 
                 5666666666666799*********98769******97 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.033
   TIGR00019 255 ivvecqdersqlknkekalkvLraklleaeeekqqeeqakeRksqvgsgdRs 306
                 ++v+ q+ r q +n+ + l  L+  + ea+ e ++++   +  s+ g g+R 
  MMETSP1174-20130828|1777_1  97 LIVSSQEHRTQRRNRVECLLKLKLLVAEAAVEPKERNL-YTDISKKGKGQRR 147
                 67999**********99987666665555555444333.2333444555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 735.37
//
Query:       MMETSP1174-20130828|1773_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-10   36.8   0.0    3.4e-09   33.6   0.0    2.1  1  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
     0.0037   14.1   1.5      0.015   12.1   0.0    2.5  3  TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family


Domain annotation for each model (and alignments):
>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.7e-12   3.4e-09     179     382 ..     205     421 ..     170     447 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.7e-12
   TIGR02289 179 ldriydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedvakyresvlkyvvPlltklrkrkkkrlgieklrpyDesaefadgkvkPkadvdellekaekmykelslefkeffdflleknllDleskkgKaaGgyct...........ylpkskapfif.s..Nfngt.sgdidvliHEvGHafqvyeslk..qllpeyrwlt.aeaaElaSmslEllsl 382
                 l++ + +Lv+ R+++Ak l fe y d++    e   + ++ +++  ++++++  Pl+++ r+r ++ +g + l+p+ + +  a + v  k d  +  ek+ +m+ +  +++   ++       lDl ++k K + g+c+           +++ s++ f   +  N +g+    + +l+HE+GHa ++ + +    l  ++r +t +  aEl+Sm l+ l+ 
  MMETSP1174-20130828|1773_1 205 LENGFVDLVRARNQMAKALDFEDYYDYKVTGAEG--FGKKALFEILDELERETRPLMERSRNRLAEEMGEAALEPWNTGFMMAGD-VVKKMDPYFPFEKSIEMWGRSFAKMGIGYSG--ASMDLDLLDRKRKYSNGFCHwpqpawvkpdgSFQPSRTHFTSlAdpNGVGSgLTGLVTLMHEAGHAAHFANIRMpsPLFSQERAPTsVPYAELQSMLLDSLVG 421
                 5666779*****************9987777766..899***************************************8876654.5556677777777777777765555554443..334489999**********94444333333334555555543132233333135689***********9777765456667777662679******9987764 PP

>> TIGR02290  M3_fam_3: oligoendopeptidase, pepF/M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.048        97       9      72 ..      30      89 ..      25     150 .. 0.76
   2 ?   -2.2   0.0      0.15   3.1e+02     265     321 ..     250     310 ..     218     314 .. 0.74
   3 !   12.1   0.0   7.3e-06     0.015     376     484 ..     374     494 ..     369     499 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.048
   TIGR02290  9 asksseeieedlekikaevdelekklkekledldakekeklekalkklealsellskvrayasl 72
                +s +s e++++++++++e ++l+k+ + ++  +    k  l++   + e+l++  s+++a+++ 
  MMETSP1174-20130828|1773_1 30 TSVHSVEAQSFIDTVNSEYEQLHKAFELQFWGT----KMALKDECYRTEELTRTKSEMEAFLAS 89
                567788999999999999999999888654433....356899999999999999999999764 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.15
   TIGR02290 265 evvkenlplfrrylklkAkllGkeklkfyDl....lAplskksakkysfdeAkelvleafk 321
                 e   e  pl++r  ++ A+ +G ++l++++        + kk ++ ++f+   e+  ++f+
  MMETSP1174-20130828|1773_1 250 ELERETRPLMERSRNRLAEEMGEAALEPWNTgfmmAGDVVKKMDPYFPFEKSIEMWGRSFA 310
                 4556788999999999999999999999995222123455555666777777766666665 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 7.3e-06
   TIGR02290 376 vaTLAHELGHavHsellkd.qpllnar...ypltlAETASvFaEtlladallkeaktee.eklslLaekledaiat.....lv...rivarflFEkrfyearkegelsaeelkeLmleaqke 484
                 ++TL HE GHa H+  ++   pl  ++   ++++ AE  S++   l+ da   ++   +     l  e +e+ i       ++      a+ +FEkr+ye   +  l+ae++++L  e+  e
  MMETSP1174-20130828|1773_1 374 LVTLMHEAGHAAHFANIRMpSPLFSQErapTSVPYAELQSMLLDSLVGDASWRRLYALNrAGEPLPFETIEEDIRAthpykVMalrSMLAVPYFEKRLYEL-SDDDLTAEKISALANEVEME 494
                 68***********9988751454443222256788**************99887654320223333444443332211122331113456678*****998.89999*****9999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 1588.67
//
Query:       MMETSP1174-20130828|1778_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 982.15
//
Query:       MMETSP1174-20130828|1776_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 1764.49
//
Query:       MMETSP1174-20130828|1780_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1174-20130828|1779_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   16.4   0.2      0.003   15.8   0.1    1.3  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   7.2e-07     0.003       4      57 ..       5      64 ..       2     101 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.2e-07
   TIGR01079  4 ikkgDtVlvisGkdkGkkGkvlkvlpkkdk......viVegvnlvkkhvkpkeekekegg 57
                ik+g  V+++ G   G+k+ v+k + ++++      +iV g+    +++ + ++kek+ +
  MMETSP1174-20130828|1779_1  5 IKQGKVVVLLHGRYAGRKAVVVKTCDENSNdrkfphAIVAGIDRYPRKITRAMTKEKKEK 64
                99***********************99865678999******887776665555554322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 546.81
//
Query:       MMETSP1174-20130828|1781_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.46
# Mc/sec: 1563.78
//
Query:       MMETSP1174-20130828|1783_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 151.54
//
Query:       MMETSP1174-20130828|1782_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|1784_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1164.80
//
Query:       MMETSP1174-20130828|1785_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 639.95
//
Query:       MMETSP1174-20130828|1786_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 427.23
//
Query:       MMETSP1174-20130828|1787_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.70
# Mc/sec: 784.39
//
Query:       MMETSP1174-20130828|1788_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 333.85
//
Query:       MMETSP1174-20130828|1792_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|1789_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 459.32
//
Query:       MMETSP1174-20130828|1790_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 796.65
//
Query:       MMETSP1174-20130828|1794_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  113.9   0.1    1.2e-32  110.9   0.1    1.9  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.8e-33  112.8   0.0    6.6e-33  112.0   0.0    1.3  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.2e-11   40.9   0.0    8.7e-06   21.5   0.0    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.3e-09   34.7   0.0    1.8e-05   21.0   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.6e-06   24.3   0.0    6.8e-06   22.9   0.0    1.6  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.8e-06   24.4   0.0    0.00024   18.0   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    1.3e-05   21.5   0.0    2.5e-05   20.6   0.0    1.4  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00042   17.3   0.0      0.021   11.8   0.0    2.5  3  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
     0.0077   13.5   0.1      0.014   12.6   0.1    1.4  1  TIGR01500 sepiapter_red: sepiapterin reductase
  ------ inclusion threshold ------
      0.019   10.3   0.0       0.43    5.8   0.0    2.0  2  TIGR01054 rgy: reverse gyrase


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.1     3e-35   1.2e-32      13     412 ..      31     463 ..      28     471 .. 0.76

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 3e-35
   TIGR01389  13 eFRggqeeiieevldgrdvlavlPtGGGkslCYqv........PaLllkgltvvisPLisLmkDqvdqLraaGveaaalnst.......lsa.......keaqeilkalaagelklL.....YvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefvssfdRenlafsvvkkenkk..........kqlleylk...kereksGiiYassRkkveelaeaLeskgieal..aYhaGlskkvRaeaqekFleddvkvvvatva.FGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayaetkkCrrklllkyFgee.eveeCgnCdnCldpakavdatveaqkilscv 412
                 +  ++q + i+e+l+g++v+  + tGGGk l   +        P  +++g  +   P ++L++D    L   G++  +  s+       ls+       +  ++  +++  ++++++     + a    + +  +++++r +  ++ +Dea         +Rp+  +lg +   +  apv+   at ++   ++ v   + k+a+ + +  dR+nl  +     ++k          ++ll ++    +er++  ii+  s k+v+++ ++L+    + l   Yha + +k++++ +++F   +++v+v t a F  G+d ++vR v  l++P+++e+++q  GRaGRDG++a   l+ s +D a   + ++es++s+++          l a+  + +Cr k  l+y +   ++++Cg+Cd C    ++ da + ++ +l +v
  MMETSP1174-20130828|1794_1  31 SLHPHQLTAIHELLSGNSVFQRVQTGGGKTLVVILlvllrqdyPNKYRSGKILAFFPTLALIQDTKRRLSDYGISCWTSPSNensytngLSRasscvisEPDEKTSSNI--SQVDVVlstgeFWASSSPKAQAARNVVAREENRIIWIDEADTAVITSKTYRPSQSMLGDMPGVYAPAPVLFSSATFTEILLKEAVMFYKSKHAKFVQTQADRQNLKVKRLDAADMKaakgvvyeqiEDLLCFVAhspNERTDQAIIFVRSHKDVDDMCAYLKGLSPTKLidRYHAEMLSKEKKKILKNFASLKTRVLVVTLAsFAAGMDYPNVRSVYLLNIPESVEQFWQAIGRAGRDGKPASVYLFASLTDTA---KALAESQPSSHYAIRI-----VLRAFGVSSRCRLKETLEYIDGInSTTSCGHCDLCEG-FSSHDAHKRVHSLLNSV 463
                 5678999***********************9875511222222666677899999*******************87655443111111112200000002222233333..4555551133344555566788999******************9*************************************************************987655444331111122111456666652224677999*****************86554443227*************************999877****************************************99999999975...6788888888775332.....355778899**********9664499*********64.44566666666666665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.6e-35   6.6e-33       8     429 ..      28     470 ..      22     508 .. 0.80

  Alignments for each domain:
  == domain 1    score: 112.0 bits;  conditional E-value: 1.6e-35
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCy........qlpavvsdgltlvisPLisLmeDqvlqLkasdisatlLnsaqsk.....ee.akevladl......kdgklkllYvtPekvsksksllqkle...erkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyevee....kks.....kiledllkfiv..kefkgksGiiYClsrkkveqvaaeLqkkgla..aaaYhagleesarkevqkkflrdeiqvvvatva.fGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllekvekyensskCRRlillsyfeekqlkkasskkgteksCdnCkkrldyktkdvedkvkdlikqaqkllsav 429
                 + +s +p ql +i+  l+g+ ++  + tGgGk L           +p  + +g  l   P  +L++D   +L   +is+ +  s++ +     ++ ++ v ++       + +++ ++  t e+ ++s    q      +r +  +i +Dea         +R++  +lg +   +  +pv+  +at ++ + ++++   k k+++ + t  dR+nlk +  +    k +     + +edll f+    + + +  ii+  s+k+v+++ a L+ ++ +     Yha + ++++k++ k+f   + +v+v t+a f  G++ p+vR v   ++p s+e+++q +GRaGRDg +++  lf + +D a   + l e +     +y   +   + ++  ss+CR +  l+y +           ++ +sC+ C+ +  ++ +d +++v++l++ +q  ++ +
  MMETSP1174-20130828|1794_1  28 KIQSLHPHQLTAIHELLSGNSVFQRVQTGGGKTLVVillvllrqDYPNKYRSGKILAFFPTLALIQDTKRRLSDYGISCWTSPSNENSytnglSRaSSCVISEPdektssNISQVDVVLSTGEFWASSSPKAQAARnvvAREENRIIWIDEADTAVITSKTYRPSQSMLGDMPGVYAPAPVLFSSATFTEILLKEAVMFYKSKHAKFVQTQADRQNLKVKRLDaadmKAAkgvvyEQIEDLLCFVAhsPNERTDQAIIFVRSHKDVDDMCAYLKGLSPTklIDRYHAEMLSKEKKKILKNFASLKTRVLVVTLAsFAAGMDYPNVRSVYLLNIPESVEQFWQAIGRAGRDGKPASVYLFASLTDTA---KALAESQPS--SHYA--IRIVLRAFGVSSRCRLKETLEYIDG---------INSTTSCGHCDLCEGFSSHDAHKRVHSLLNSVQYPEQPQ 470
                 578999***************************875233333326899999999***********************9866555433211111110223333324533335578899999***999887655554445488899999**********************************************************************986433111133344556667788888876645566677*****************97765422568*************************999987*****************************************9998888865...455555444..3343..445678999**************99.........345688999999999999999999999998888665555 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.7e-07   0.00015      13      83 ..      31     100 ..      23     107 .. 0.89
   2 !   21.5   0.0   2.1e-08   8.7e-06     182     353 ..     213     383 ..     159     391 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.7e-07
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdierale 83 
                 +++++Q  +++++ +g+s +  + TG+GKTl v l +l++    +k + + k+l   P  aL +d++r l+
  MMETSP1174-20130828|1794_1  31 SLHPHQLTAIHELLSGNSVFQRVQTGGGKTLVVILLVLLRQDYPNKYR-SGKILAFFPTLALIQDTKRRLS 100
                 5799***********************************999666666.55899999*********99886 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.1e-08
   TIGR04121 182 ATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleei.....kkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcT.ssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepski 353
                 AT  ++   ++v+  ++k  +ak v+++ +++    + l++  +    +G +  +++e++l  +     +++ ++++F+   +  + +   L  + +   + i  +H+ + +++++k+ +++++ k r++v T +s+  G+D+ +v  v  +  p +v  + Q iGR++   + p+ +
  MMETSP1174-20130828|1794_1 213 ATFTEILLKEAVMFYKSK--HAKFVQTQADRQNLKVKRLDA-ADMKAAKG-VVYEQIEDLLCFVahspnERTDQAIIFVRSHKDVDDMCAYLKGLSPT--KLIDRYHAEMLSKEKKKILKNFASLKTRVLVVTlASFAAGMDYPNVRSVYLLNIPESVEQFWQAIGRAGRDGK-PASV 383
                 555555555555554444..555555555555444444444.22222333.34455555554441111134567899999999999999999999998..899*************************9777769*********************************96544.4444 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.9e-05     0.012      21     103 ..      14     101 ..       4     133 .. 0.84
   2 !   21.0   0.0   4.4e-08   1.8e-05     273     384 ..     282     388 ..     224     396 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.9e-05
   TIGR03817  21 vepdvvaaleaaG..ieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.....pratalylaPtkalaadqlravke 103
                 +e d+ +ale++G  i++ + hq++a +   +G++v     t  Gk+l   l vl +   d     +  ++l + Pt al +d  r +++
  MMETSP1174-20130828|1794_1  14 LERDCLDALEKRGskIQSLHPHQLTAIHELLSGNSVFQRVQTGGGKTLVVILLVLLRQ--DypnkyRSGKILAFFPTLALIQDTKRRLSD 101
                 6789999999999778999*****************************9999888554..33345568899************9998776 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 4.4e-08
   TIGR03817 273 rtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaat.nalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvar 384
                 ++++fvrs +  + +++  k +        ++ +  y a  l+ +++++ +++++ + + ++ t  ++  G+d   + +v +   P  v  +wq +GraGr+g+ a v l a+
  MMETSP1174-20130828|1794_1 282 QAIIFVRSHKDVDDMCAYLKGLSP------TKLIDRYHAEMLSKEKKKILKNFASLKTRVLVVTlASFAAGMDYPNVRSVYLLNIPESVEQFWQAIGRAGRDGKPASVYLFAS 388
                 456666666666655554443322......344667*****************99999887766255899************************************9999885 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.7e-08   6.8e-06     466     567 ..     290     390 ..     276     399 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.7e-08
   TIGR00643 466 lkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaT.tviEvGvdvPna.tvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepks 567
                  k++ +++ +lk   p+  ++ +h+ + s+ek+++l++F + ++ +Lv T      G+d Pn+ +v ++  +e   + q  Q  GR gR  k + + L a + +
  MMETSP1174-20130828|1794_1 290 HKDVDDMCAYLKGLSPTKLIDRYHAEMLSKEKKKILKNFASLKTRVLVVTlASFAAGMDYPNVrSVYLLNIPES--VEQFWQAIGRAGRDGKPASVYLFA-SLT 390
                 5789999*****************************************99345899******846777777885..79***********99998888877.333 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0083       3.4       9      99 ..      32     124 ..      26     180 .. 0.80
   2 !   18.0   0.0   5.9e-07   0.00024     298     383 ..     290     377 ..     243     402 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0083
   TIGR04095   9 lrdyqkeaikaWfknngrGil.kmatGtGktltaLalvskl...aekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekl 99 
                 l+++q  ai++ +   g  ++ ++ tG Gktl  + lv       +k +s  ++   P   L++   + +  +g++   + ++ + +++ ls++ 
  MMETSP1174-20130828|1794_1  32 LHPHQLTAIHELLS--GNSVFqRVQTGGGKTLVVILLVLLRqdyPNKYRSGKILAFFPTLALIQDTKRRLSDYGISCWTSPSNENSYTNGLSRAS 124
                 67899999998875..445552699******9987776555455688889999999999999999999999999999888888888888887765 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.9e-07
   TIGR04095 298 erqidevvkllg.eelglrvktftaeeskeeReellkqfesgelqalv.airCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                 ++ +d++ ++l   +    ++++ ae  ++e++++lk+f+s +  +lv ++     G+D P++r  y+L   +   qF q  GR  R 
  MMETSP1174-20130828|1794_1 290 HKDVDDMCAYLKgLSPTKLIDRYHAEMLSKEKKKILKNFASLKTRVLVvTLASFAAGMDYPNVRSVYLLNIPESVEQFWQAIGRAGRD 377
                 5666666666542444556899*********************9998527999***************************99998775 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.1e-08   2.5e-05     660     766 ..     282     388 ..     253     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.1e-08
   TIGR00580 660 qvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcT.tiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvp 766
                 q+   +   ++++++ + l+ l P   i   H++m ++e ++++++F++ ++ vLv T +   +G+d pn+  + + +  +  + q +Q  GR GR  k a  yl   
  MMETSP1174-20130828|1794_1 282 QAIIFVRSHKDVDDMCAYLKGLSPTKLIDRYHAEMLSKEKKKILKNFASLKTRVLVVTlASFAAGMDYPNVRSVYLLNIPE-SVEQFWQAIGRAGRDGKPASVYLFAS 388
                 555555566889999999**************************************9955689**********99888876.599*******************9654 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.2e-05     0.021       1      62 [.      35     102 ..      35     118 .. 0.78
   2 ?    2.8   0.0     0.026        11     269     356 ..     274     374 ..     225     375 .. 0.66
   3 ?   -2.9   0.0       1.5   6.1e+02     175     202 ..     498     525 ..     479     533 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.2e-05
   TIGR03158   1 HqvavlealkekdadvllntAptGaGKtlaa.lvevlseeldt.......ialyPtNaLiedqekaikel 62 
                 Hq++  + l +++   +++   tG GKtl   l+++l++++         +a +Pt aLi+d ++  + +
  MMETSP1174-20130828|1794_1  35 HQLTAIHELLSGN--SVFQRVQTGGGKTLVViLLVLLRQDYPNkyrsgkiLAFFPTLALIQDTKRRLSDY 102
                 6665555455554..4899*********98725566677665577889999***********99988766 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.026
   TIGR03158 269 qlsgerg...aiildslaevkrlsellreqelglqvgritGlakkkeker......alsfdi.llgtsavdvGvdFktd...fliFsasdaaeFlqRlGRl 356
                 + ++er+   +i + s ++v+ +  +l+    ++ + r       kek +      +l++ + +++ ++   G+d+      +l+   +++ +F+q +GR 
  MMETSP1174-20130828|1794_1 274 HSPNERTdqaIIFVRSHKDVDDMCAYLKGLSPTKLIDRYHAEMLSKEKKKilknfaSLKTRVlVVTLASFAAGMDYPNVrsvYLLNIPESVEQFWQAIGRA 374
                 5555554441344578888888888888855555777766655444444411111123444414555778999999876788999999***********96 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.5
   TIGR03158 175 irteecrrklvfLsAtPdeelierlkea 202
                 ++ +++++k ++Ls   d++ ++rl+e 
  MMETSP1174-20130828|1794_1 498 FDQHIQNKKKLILSVSTDDAAQQRLRES 525
                 4555666777788888888999999876 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.5e-05     0.014      49     154 ..     238     345 ..     217     356 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-05
   TIGR01500  49 eaevsalsvdlv.sldleaakdv.....edllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLca 154
                 +a++++l+v++  ++d++aak+v     edll  +  s++++  + i+++  +  + d+    k ls +k +++y++  + s    + ++lk +  +    ++vv l+s +a
  MMETSP1174-20130828|1794_1 238 QADRQNLKVKRLdAADMKAAKGVvyeqiEDLLCFVAHSPNERTDQAIIFVRSHKDVDDMCAYLKGLSPTKLIDRYHAE-MLS--KEKKKILKNFA-SLKTRVLVVTLASFAA 345
                 3788888898752789**99874443339999*****************************************99765.434..24678899998.4457889999999888 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.001      0.43      85     150 ..      36     106 ..       7     191 .. 0.62
   2 ?    2.3   0.0     0.012       4.9     156     188 ..     309     341 ..     285     357 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.001
   TIGR01054  85 qkmWakrvlknksFaivaPtGvGkttfglvmsl....flakk.gkrvyiilPttlLvkqvaeklsslaeke 150
                 q +  + +l ++s    + tG Gkt + +++ l    +  k    ++++ +Pt  L++++ ++ls++  + 
  MMETSP1174-20130828|1794_1  36 QLTAIHELLSGNSVFQRVQTGGGKTLVVILLVLlrqdYPNKYrSGKILAFFPTLALIQDTKRRLSDYGISC 106
                 5555677888999888999******9988877722224334347899*****************9986543 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.012
   TIGR01054 156 vvayhsklstkekkevkeriengdfdilittsa 188
                 +  yh+++  kekk++ +++++   ++l+ t a
  MMETSP1174-20130828|1794_1 309 IDRYHAEMLSKEKKKILKNFASLKTRVLVVTLA 341
                 567***********************9988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.57
# Mc/sec: 1265.27
//
Query:       MMETSP1174-20130828|1800_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1174-20130828|1798_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   45.2   0.0      1e-12   45.2   0.0    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      1e-12   45.6   0.1      1e-12   45.6   0.1    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.1e-07   29.3   7.5    2.5e-07   28.0   5.2    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.4e-07   29.3   0.1    2.9e-07   28.2   0.0    1.5  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.3e-07   27.3   0.1    6.3e-07   26.4   0.0    1.4  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    5.5e-06   23.2   0.0    5.5e-06   23.2   0.0    2.0  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00051   17.6   0.0    0.00077   17.0   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
        3.2    6.3  11.6        1.5    7.3   5.8    1.9  2  TIGR02747 TraV: type IV conjugative transfer system protein TraV


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.9e-15     1e-12     299     373 ..       5      79 ..       2     105 .. 0.91
   2 ?   -6.6   8.3         8   4.1e+03      60     112 ..     156     209 ..     148     212 .] 0.39

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.9e-15
   TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                 +yig +P+ + +dq+k    +FG+++   l +  +tG+sKGy+F+e+ +   + +  ++++   + d+ L vk+ 
  MMETSP1174-20130828|1798_1   5 VYIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSKKTGNSKGYGFIEFSEVDTAVVVAESMDKYIIADRALVVKQL 79 
                 7*********************************************************************99975 PP

  == domain 2    score: -6.6 bits;  conditional E-value: 8
   TIGR01642  60 srsissleedsrrrSRdrirrrsrsss.seskerrrsrkrsssnekkkddkkrs 112
                 +++ s +++  +   R++  ++ +  + ++++++++  +    +ek+k++++ +
  MMETSP1174-20130828|1798_1 156 QEKSSTQDQVEQDENRQKAVKKTKTAKvQKETKKEKVVEEKVVKEKRKSKRNTK 209
                 222222222233444444433333322123333344444444455555554444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1     2e-15     1e-12     222     295 ..       5      78 ..       2      88 .. 0.93
   2 ?   -4.8   7.4       3.9     2e+03      54     100 ..     165     207 ..     148     212 .] 0.31

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2e-15
   TIGR01622 222 LYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                 +Y+G +     E+++++ F  FG++  ++l + ++tG skGyGFi+Fs+ ++a    e +    +A R + v +
  MMETSP1174-20130828|1798_1   5 VYIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSKKTGNSKGYGFIEFSEVDTAVVVAESMDKYIIADRALVVKQ 78 
                 6************************************************************9999999988765 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 3.9
   TIGR01622  54 rdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrre 100
                  ++d+ r++  ++ k  + ++e ++ek   +e++v   +++r+++r+
  MMETSP1174-20130828|1798_1 165 VEQDENRQKAVKKTKTAKVQKETKKEKV-VEEKVV---KEKRKSKRN 207
                 2222222222222222222222222221.111111...223333333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   5.2   4.9e-10   2.5e-07     288     472 ..       5     200 ..       2     212 .] 0.52

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.9e-10
   TIGR01628 288 lYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf............mqasaesrqlsigspvigaan....isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpea..pnalaqlaqqrlqaqgr..rnlnnrnrnvlgn 472
                 +Y+  +  ++ + +++  F++fG++   ++ ++ ++++Skg+GF+ fs+ + A    + ++  i+  + L v     +   k++ +                       + + ++++    +    +   ++a++++ +   +v+  + ++    +  q++ stq + ++++   +a++++++ + q++ +  + +   +++v ++
  MMETSP1174-20130828|1798_1   5 VYIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSkKTGNSKGYGFIEFSEVDTAVVVAESMDKYIIADRALVVKQLPSHKVHKKMWKGSGervpvinniaieV------AHHHKSRTIAEKNKvtrgL-LANEAKKRKRLADLGVEYDFPGYHACLNDDQEKSSTQDQVEQDEnrQKAVKKTKTAKVQKETKkeKVV---EEKVVKE 200
                 688888888889999999999999999999988567899999999999999999999999999999999999754444444444443332344443332221......1112222222222221111.12366666777777777777777666664444444444442222112333332222222221111111...2222222 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.7e-10   2.9e-07     282     343 ..      16      77 ..       5      86 .. 0.83
   2 ?   -1.9   0.0      0.82   4.2e+02     237     237 ..     167     167 ..      95     205 .. 0.58

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.7e-10
   TIGR01661 282 deavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                 ++++   f++fG v+ +++ r  +t + kGygf+  ++ d a++  +s++ y +++r l v 
  MMETSP1174-20130828|1798_1  16 EDQMKGYFSQFGNVRRLRLSRSKKTGNSKGYGFIEFSEVDTAVVVAESMDKYIIADRALVVK 77 
                 45556679999999999999999999999999999999999999999999999999998775 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.82
   TIGR01661 237 q 237
                 q
  MMETSP1174-20130828|1798_1 167 Q 167
                 1 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-09   6.3e-07      60     125 ..       4      70 ..       1      77 [. 0.91

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.2e-09
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeir 125
                  v++G iP   yed++   f + G++  lrl      G+ +Gy f+ f++ + a      +++y i 
  MMETSP1174-20130828|1798_1   4 VVYIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSkKTGNSKGYGFIEFSEVDTAVVVAESMDKYIIA 70 
                 59*****************************998799****************99999999999875 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.1e-08   5.5e-06     111     177 ..       8      75 ..       1     109 [. 0.59
   2 ?   -4.5   4.7       2.7   1.4e+03     436     480 ..     159     203 ..      93     211 .. 0.55

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.1e-08
   TIGR01645 111 GsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve..evPeaallaleqmngallGGrnlk 177
                 G i + + ed ++  f+ fG ++ + +s    t++ kg+ f+e  ev ++a +  e+m+  ++  r l 
  MMETSP1174-20130828|1798_1   8 GHIPHGFYEDQMKGYFSQFGNVRRLRLSRSKKTGNSKGYGFIEfsEV-DTAVVVAESMDKYIIADRALV 75 
                 55555555555555555555555555555555555555555555333.233333455555555555554 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 2.7
   TIGR01645 436 asslalaaaakakeaaaalllenkkkkkekeeeelqpklveeeed 480
                 +s+    ++ ++++ a  +   +k +k+ k+e+ + +k+v+e+++
  MMETSP1174-20130828|1798_1 159 SSTQDQVEQDENRQKAVKKTKTAKVQKETKKEKVVEEKVVKEKRK 203
                 333333333334444444444444444455555555555555544 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.5e-06   0.00077     197     248 ..       6      57 ..       2      79 .. 0.56

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-06
   TIGR01659 197 yvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreea 248
                 y+  +p    +dq++  f ++g++ +  + r k+tg+ +g  f+ f   + a
  MMETSP1174-20130828|1798_1   6 YIGHIPHGFYEDQMKGYFSQFGNVRRLRLSRSKKTGNSKGYGFIEFSEVDTA 57 
                 5555555555555555555555555555555555555555555555444433 PP

>> TIGR02747  TraV: type IV conjugative transfer system protein TraV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.69   3.5e+02      54      83 ..      82     112 ..      54     136 .. 0.66
   2 ?    7.3   5.8     0.003       1.5      28      90 ..     151     208 ..     145     212 .] 0.76

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.69
   TIGR02747  54 eevkkdllegeekeeavlvestvtlak.akt 83 
                 ++v+k++ +g+ +  +v+ +++++ a   k 
  MMETSP1174-20130828|1798_1  82 HKVHKKMWKGSGERVPVINNIAIEVAHhHKS 112
                 4556668888888888888777776653332 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.003
   TIGR02747  28 Ceategvgtcatmdqvnedkkrleqqeevkkdllegeekeeavlvestvtlakaktvaakksl 90 
                 C   ++ +   t dqv++d++r+++ +++k  +++ e+k+e+v+ e  v++ +    ++k+++
  MMETSP1174-20130828|1798_1 151 CLNDDQ-EKSSTQDQVEQDENRQKAVKKTKTAKVQKETKKEKVVEEKVVKEKR----KSKRNT 208
                 555555.78899********************999999999999755555444....333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       655  (0.159678); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 717.48
//
Query:       MMETSP1174-20130828|1795_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 894.12
//
Query:       MMETSP1174-20130828|1805_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   19.5   0.0    9.3e-05   19.2   0.0    1.2  1  TIGR00115 tig: trigger factor
  ------ inclusion threshold ------
      0.018   12.5   0.0      0.022   12.3   0.0    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.5e-08   9.3e-05     152     212 ..      35      98 ..      24     158 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.5e-08
   TIGR00115 152 gDivtidfeg.kvdGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedy 212
                 gD+vt+ ++g   dG  f++  a    f+++lg g +i+g +  +  m +Ge  ++ +     y
  MMETSP1174-20130828|1805_1  35 GDTVTVHYVGtLSDGTIFDSSRAkgRTFSFVLGTGAVIQGWDVLVASMFVGERSTVSLRHDYAY 98 
                 9*********556******987722569**************************9988744444 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.022      92     170 ..     114     192 ..      89     201 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
   TIGR02032  92 efDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklglkkekrelavalra 170
                 +fD  L++ A+++++      ++++    + +++++ +e    e  + ivi  dG++s+++++ ++ ++++e+ v l +
  MMETSP1174-20130828|1805_1 114 HFDVELLDVAASTEISSPPLSALTASDSTEGAQTITESESAILERLGPIVINTDGSYSRISNWSQMTEKEKERTVRLVT 192
                 56777777777766665444444443333334444444446778899******************99777777776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 683.64
//
Query:       MMETSP1174-20130828|1810_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|1812_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|1818_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 668.19
//
Query:       MMETSP1174-20130828|1821_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|1817_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|1822_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.3   2.6      0.056   11.0   1.8    1.1  1  TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family
        1.4    5.3   7.6        1.6    5.1   5.3    1.0  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR01102  yscR: type III secretion apparatus protein, YscR/HrcR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   2.7e-05     0.056      53     131 ..       2      81 ..       1      89 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.7e-05
   TIGR01102  53 lslfvmaPvllevkerleeeevelsdidklk.klldealepyreflkknteeeevaffeesakklwpkekkdelkkddll 131
                 +s+ vm  v +++ +++++++v+++  ++ + +   +++++ +  l++  +++++  ++e +kk+  ++k++++ + dl+
  MMETSP1174-20130828|1822_1   2 VSMQVMKGVNEHLVRQANQQQVSTAVEEERQrRQSMATMKGVNLELEREHNRKSAISLMEDEKKMREHTKRKSVMETDLI 81 
                 799**********999999999876555544267778899********************************99999986 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.3   0.00078       1.6     156     246 ..      17     108 ..       3     121 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00078
   TIGR00437 156 iklvekkkraieilkeaeslaevkek.lkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtk 246
                 + ++++++ a+e+ ++ ++  ++++    el+ + +++ ++ ++  e++++e  k++  ++  ++ ++++k+ ++ +a+e+ +lve++ +t+
  MMETSP1174-20130828|1822_1  17 QANQQQVSTAVEEERQRRQSMATMKGvNLELEREHNRKSAISLMEDEKKMREHTKRKSVMETDLIRKNNQKVATAATAEEQVRLVEEHGTTR 108
                 44556666666666666665555554045555566888899999999999999999999999999999999999999999777776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       514  (0.125305); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 445.91
//
Query:       MMETSP1174-20130828|1816_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-25   86.1   0.2    1.1e-24   84.9   0.1    1.5  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      2e-20   70.6   1.2    1.7e-19   67.5   0.8    1.9  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.9e-14   49.2   0.0    6.1e-14   48.5   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.9e-13   45.5   0.0    9.4e-09   31.9   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.8e-09   33.6   0.0    1.7e-08   31.5   0.0    1.8  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.8e-07   27.6   0.2    7.1e-07   25.6   0.1    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
    2.1e-07   28.1   0.0     0.0031   14.4   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    5.4e-05   20.3   0.0    9.6e-05   19.5   0.0    1.4  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0004   16.6   0.0    0.00066   15.9   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.1   2.3e-27   1.1e-24      16     349 ..      90     431 ..      78     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 2.3e-27
   TIGR00614  16 qlevinavlegrdalvvmatGgGksLCyqlpavvs...........dgltlvisPLisL...meDqvlqLk.asdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykal.gsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfd...Rpnlkyeveekks.kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdek 349
                 q +    +l grd++ +  tG Gk L + lpa++            + + lv++P + L   ++   ++   +s+i+ t++ +   k   ++v  dl++g + ++  tP +++ +  l + + + +++t +++Dea  + + G  f ++ +++ g++    P+   +  +at   +v++ +   L+ +  qvt+ s +    + +k +ve  +  +  +++++f++++fkg+  i++  +++ +++++ +++ +g  a+a h + ++++r++  ++f    +q++vat     G++   v++vi +++p + e Y   +GR GR g   +++ + + ++  + r ++    + +
  MMETSP1174-20130828|1816_1  90 QSQGWPMALLGRDMVGISKTGSGKTLAFLLPAMIHinaqpylqrgdGPICLVLAPTRELavqIKGECDKFGgTSNIKNTCVYGGVPKR--TQV-FDLRNG-VEIVIATPGRLIDH--LESGVTNLQRVTYLVMDEADRMLDMG--FEPQIRKIvGQI---RPDRQTLMWSATWPREVQTMARDFLS-NYYQVTVGSLElsaNKAIKQMVEVVEDhDKYNKCMQFLRENFKGDRTIVFVETKRGCDTLTRSIRMDGYPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRIGRCGRAGASGTAMSYMTRKNARMARDIIKLLAEAN 431
                 555556799***********************975333333333223499*****988833355667776436889988888887777..444.578877.67888999998877..66778899***************999..778887751555...59999999*********998777775.6788888888732245688777766655999**********************************************************************999************************************************999999987665554 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.8   3.7e-22   1.7e-19      27     343 ..      99     427 ..      80     445 .. 0.76

  Alignments for each domain:
  == domain 1    score: 67.5 bits;  conditional E-value: 3.7e-22
   TIGR01389  27 dgrdvlavlPtGGGkslCYqvPaLllkg...........ltvvisPLisLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevrediv....ekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrliees 343
                  grd++++  tG Gk l + +Pa++  +           + +v++P   L      +  + G ++++ n  +     ++       + ++++  +P rl+ +    + + ++++ l +Dea  +   G  F p+ ++++  +   p++  +   at   ev++  +    ++ +++  +   s+ +  + + +vv++++k ++ +++l+++ + +  i++ ++++  + l++ ++ +g++a a h+  s+++R++++++F   + +++vat     G+d   v  vi +d+P++ e y    GR GR G    a+   + ++  +++ +i+  
  MMETSP1174-20130828|1816_1  99 LGRDMVGISKTGSGKTLAFLLPAMIHINaqpylqrgdgpICLVLAPTRELAVQIKGECDKFGGTSNIKNTCVYGGVPKRTQVFDLRNGVEIVIATPGRLIDHLESGVTNLQRVTYLVMDEADRMLDMG--FEPQIRKIVGQI--RPDRQTLMWSATWPREVQTMARdflsNYYQVTVGSLELSANKAIKQMVEVVEDHDKYNKCMQFLRENFKgDRTIVFVETKRGCDTLTRSIRMDGYPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRIGRCGRAGASGTAMSYMTRKNARMARDIIKLL 427
                 57788888888888888888888764321122222233467777887776554445566666555555544444433333333345568888889999987766666667778899999999998888..789988887654..46666777777776666654440001445555555556666666778899****************98779****************************************************************************************************999999999999999864 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.3e-16   6.1e-14      14     345 ..      86     401 ..      80     416 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.3e-16
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk..kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATv.gnleeaae.vllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                 p+a Q + +  a  g++ + i  TG+GKTla  lp++i++ a+   +  +g   l ++P + La++i+   ++       +i+     G  +++++    ++  +i++ Tp  l      ++  + +++++ +v+DE   +l      +++  +    +++p+ +++  sAT   +++++a+ +l++  +   +++ + + +++++++++++          h   +++ + l+e  k   t+vF+ t+  +++l +++         +    Hg  ++e+R++  + +++g+ +++v+T     G+D + v++vi+   p  +   + RiGR + 
  MMETSP1174-20130828|1816_1  86 PTAIQSQGWPMALLGRDMVGISKTGSGKTLAFLLPAMIHINAQPYLQrgDGPICLVLAPTRELAVQIKGECDKFGGTS--NIKNTCVYGGVPKRTQVFDLRNGVEIVIATPGRLID--HLESGVTNLQRVTYLVMDEADRMLDMGFEPQIRKIV---GQIRPDRQTLMWSATWpREVQTMARdFLSNYYQ---VTVGSLELSANKAIKQMVEVV------EDHDKYNKCMQFLRENFKGDRTIVFVETKRGCDTLTRSIRMDG----YPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRIGRCGR 401
                 6788999*********************************9554433359999**************99988876554..4455566799*********************98754..445667889***************987777777555...567799999999***834555555405554444...333344445666666777663......346667777788888888999************9998876443....3444559***********************************************************975 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.1e-11   9.4e-09      24     167 ..      73     220 ..      64     240 .. 0.83
   2 !   11.5   0.0   3.1e-05     0.014     272     378 ..     309     407 ..     299     419 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2.1e-11
   TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp......ratalylaPtkalaadqlravkelee.rdvraatydGdtpa.eerewirekaryvltnPdmlhlgilpsharWakflralryvvvdech 167
                  v  ++ + G ++p + q +   +a  G+++v    t sGk+la+llP++  ++++p      +   l laPt+ la      + ++   ++++ ++  G  p+  +   +r+  ++v++ P  l   +    +   + l+++ y+v+de+ 
  MMETSP1174-20130828|1816_1  73 YVLGEVMKCGFDRPTAIQSQGWPMALLGRDMVGISKTGSGKTLAFLLPAMIHINAQPylqrgdGPICLVLAPTRELAVQIKGECDKFGGtSNIKNTCVYGGVPKrTQVFDLRNGVEIVIATPGRLIDHL----ESGVTNLQRVTYLVMDEAD 220
                 566788899***********************************************7777777999************9999***99874566665555555550555559999********8764443....4455678999999999986 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.1e-05
   TIGR03817 272 vrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdal 378
                  rt++fv ++rg ++++ + +               a  +   +e+r +  + ++dG+ + ++at+    G+d+  +  v+    P +   +  ++Gr+Gr+g    
  MMETSP1174-20130828|1816_1 309 DRTIVFVETKRGCDTLTRSIRMDGY--------PANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRIGRCGRAGASGT 407
                 5677777777777666555443222........22344555568999999999*************************************************97654 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.7e-11   1.7e-08     265     553 ..     109     402 ..     103     432 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.7e-11
   TIGR00643 265 VGsGKTvVavlallavies........GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqek.....vefkeLalviiDEQhrFGveQRkkLrekgkekiaph..vLvmsATPIPR...tlA...ltvygdldvsiidelPlGrkpittklikekek.dkvyevveeeikkgrqvyvvyplieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRg 553
                  GsGKT+  +l ++  i++        G  ++++aPT  LA Q   ++ ++    +i+ + + g + k   +++  ++++G +e+v+ T   l ++     ++++++++ ++DE  r   +  +   +k  ++i+p+  +L+ sAT  PR   t+A   l+ y ++ v  ++       + +++++++++k +k +++++e+ k +r + +v +     ++l        +++    +  +  + +hg  +++e+++ l++Fr+++++iLvaT v   G+dv  + +++  d         H + GR gR 
  MMETSP1174-20130828|1816_1 109 TGSGKTLAFLLPAMIHINAqpylqrgdGPICLVLAPTRELAVQIKGECDKFGGTSNIKNTCVYGGVPK---RTQVFDLRNG-VEIVIATPGRLIDHlesgvTNLQRVTYLVMDEADRMLDMGFEPQIRKIVGQIRPDrqTLMWSAT-WPRevqTMArdfLSNYYQVTVGSLELSANKAIKQMVEVVEDHDKyNKCMQFLRENFKGDRTIVFVETK-RGCDTL--------TRS--IRMDGYPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRI-GRCGRA 402
                 59*****999977766643233333336789*******************************999864...4455679988.89*****987777622222569999**********86665555555555666665338999**9.5885556777778888888888875433333444455666555569********99988888877543.222222........222..2347788999*************************************7777666555544444555555.555555 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18        81      13      75 ..      84     157 ..      77     164 .. 0.64
   2 !   25.6   0.1   1.6e-09   7.1e-07     437     562 ..     303     423 ..     279     431 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.18
   TIGR00631  13 DqpkaieklvesleagekeqvLlGvtGsGktft..ianviakvqkP.........tlvlahnktLaaqLyeelk 75 
                 D+p+ai++    +    ++ v +  tGsGkt++  +  +i+   +P          lvla+ + La q+  e  
  MMETSP1174-20130828|1816_1  84 DRPTAIQSQGWPMALLGRDMVGISKTGSGKTLAflLPAMIHINAQPylqrgdgpiCLVLAPTRELAVQIKGECD 157
                 67777777766666667777888899999996522445555444442222222244788888888888777765 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.6e-09
   TIGR00631 437 rervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadkitesmekai 562
                 re   k++r++v + tk+ ++ lt  ++  g  ++ +h +    er + ++d+r+g++++lv  ++   GlD+  v +v  +D        + +  +  iGr  r  ++G+++ y  +    m + i
  MMETSP1174-20130828|1816_1 303 RE-NFKGDRTIVFVETKRGCDTLTRSIRMDGYPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMP-----NQAEDYVHRIGRCGRAgASGTAMSYMTRKNARMARDI 423
                 33.34689***********************************************************************999854.....4566777778887775378999999988888887655 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.8e-06    0.0031      32     199 ..     108     284 ..      94     290 .. 0.69
   2 !   12.6   0.1   2.3e-05     0.011     262     383 ..     279     402 ..     276     413 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.8e-06
   TIGR04095  32 atGtGktltaLalvskl......aekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnl...Gak.rlkealpdsiklR..LgLsatPeRyfDeeGtealleYfGkvvleftL..keaikk 199
                  tG+Gktl  L  ++         ++ +  + +v++P ++L+ q   e++kFg +    +  v    ++     +++   ++ + ++i+t   l++ +  s +  l++ + l+ Dea  +   G + ++++ + +    R  L  sat  R +     + l +Y+   v +++L  ++aik+
  MMETSP1174-20130828|1816_1 108 KTGSGKTLAFLLPAMIHinaqpyLQRGDGPICLVLAPTRELAVQIKGECDKFGGTSNIKNTCVYGGVPK----RTQVFDLRNGVEIVIATPGRLID-HLESGVTNLQRVTYLVMDEADRMldmGFEpQIRKIVGQIRPDRqtLMWSATWPREVQTMARDFLSNYYQVTVGSLELsaNKAIKQ 284
                 49*****99775443333556777888889999*******************96544333333333332....22333345567788999988887.5788899999999999999986422265414555444444444226679999999999999999999999998666521578876 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.3e-05
   TIGR04095 262 enklkaLkkllskreeesktlvYcgdgktedek...eeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                 ++ +k++ ++++ + + +k + +  +  + d +    e++r  d++++ +  + g+ ++     +s+eeR++ l++f +g+ q lva      G+Dv  +++ +     +   +++ R GR  R 
  MMETSP1174-20130828|1816_1 279 NKAIKQMVEVVEDHDKYNKCMQFLRENFKGDRTivfVETKRGCDTLTRSIRMD-GYPANAIHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFDMPNQAEDYVHRIGRCGRA 402
                 55566666666666666666666655333333211145566667777766554.78899999999************************************99999999999999*999998775 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.1e-07   9.6e-05     126     320 ..     212     403 ..     187     423 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.1e-07
   TIGR01587 126 SvliiDEvhayeeytkal.llallevlkdvdvkillmsAtlp...kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisvdvlitel...apidsLiQRlGRlaRyg 320
                   l++DE++ + +   +  + +++  ++  d + l+ sAt p   + + + + ++ +++   +l+l+ +k   ++++  +++d ++  + ++  l++  k+ + +++v t +    l   ++ ++       +H+  ++++r     ++l+++++    ++vaT v+  +lD+    ++ +      ++  + R+GR+ R g
  MMETSP1174-20130828|1816_1 212 TYLVMDEADRMLDMGFEPqIRKIVGQIR-PDRQTLMWSATWPrevQTMARDFLSNYYQVTVGSLELSANKA--IKQMVEVVEDHDKYNKCMQ-FLRENFKGDRTIVFVETKRGCDTLTRSIRMDGYP--ANAIHGDKSQEERD----RTLQDFRDGRCQILVATDVASRGLDVKLVQMVINFdmpNQAEDYVHRIGRCGRAG 403
                 5699999997777665554877777776.56678899*****77755555555566666667777777333..3444445555555556666.78888889999*****************976654..57788865555554....66************************98877766411134677899999999955 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06   0.00066     690     761 ..     338     408 ..     333     433 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-06
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLr.GRvGRskkkaya 761
                 +Hg  ++ee ++++++F +++ ++Lv+T +   G+d+  +  +i    d+   a+ y  r GR GR    + a
  MMETSP1174-20130828|1816_1 338 IHGDKSQEERDRTLQDFRDGRCQILVATDVASRGLDVKLVQMVINF--DMPNQAEDYVHRiGRCGRAGASGTA 408
                 7************************************999876644..4555555555555888887766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.19s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 1007.52
//
Query:       MMETSP1174-20130828|1828_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 997.68
//
Query:       MMETSP1174-20130828|1826_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   20.8  22.2    1.9e-05   20.4  15.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  15.4   4.6e-09   1.9e-05     677     934 ..     142     383 ..     124     428 .. 0.40

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.6e-09
   TIGR02168 677 rkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleee......leeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrle 934
                 r+ ei  ++++ +++e  +a++e++++++e +  +++       + +   e k ++ + +l +++k+++  ++++++le++l  l++  +  ++    a e++ e +e+ ++l+ e+++ k++ + +++++s++e el+e+ ee++ek++rl++l++ +    +e++ +++++++++ +i++l+ +  +  ++        +++e +e+++ +++++  +l+++++e +++  e ++            +  r+ l+++ ++ e
  MMETSP1174-20130828|1826_1 142 RRVEITAAQKKAADAETGVAAAEAKAAAAEAKAAAAK-------RLSLGHESKAKRVRCSLTQEKKRSQGFKQDAQDLEQDLDALQKGATVCTRSGRAAAERIFENSETHTNLKLELRREKSRNTVSEKRFSQFE-ELQETVEEFDEKNKRLTNLKRGA---FREARAARRKLKRKSTQISRLQGKTGSSCSKysrsklAPDIRELIEDAEHDRDQAFVELDNVQQEATKAFVESKKG-----------SVERTLLEAVGKKGE 383
                 4444444444444444444444444444444444444.......4444444445555555555555555555555555555555555555555555555555555555555555555555555555555554443.34444444444444444333322...2222333333333333333333333222221000000122222233333333222222222222222211111111...........111222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1594.02
//
Query:       MMETSP1174-20130828|1830_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 549.24
//
Query:       MMETSP1174-20130828|1829_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.1   0.0    0.00062   16.5   0.0    1.2  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal


Domain annotation for each model (and alignments):
>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-07   0.00062     251     425 ..     104     296 ..      93     301 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-07
   TIGR02339 251 klkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivss..lke.......i.eesdLGeaelveerkvgedklvfvega...knakavtillrGgtehvvdeleRaleDalkvvksvl.....edgkvvaGgGavevelakrlreyaakie 425
                  ++++s     + l    + l+++++++ad  + +++c+  + d    + a+  i av+ v  +D+  l ++tG   +++  l++       + ++  LG+ ++ e+  +   + ++++g    + + + ++++rG te + de  +     l  + + l     + g++v+GgGa +++      e+a++i+
  MMETSP1174-20130828|1829_1 104 TIRVKSTASYLSALAYRGTRLRSIINALADQRVGLLLCTEALKDPLPSLCAESRITAVQYVEPEDVAWLVEVTGVVPLTEsdLHDdallrtaLqHSPSLGRLHQAEQVAAAGASFLHLKGLtytSRPMGCQVIMRGPTEGMCDEYLKITGRMLVLLDAWLggkdsHGGMLVTGGGAWQAAAQFYCLEKADEIG 296
                 57777777778888889999******************************************************99987522444333222222345799999999999999999999997444678899*************98765555554444444332224578899999988877777767776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1448.74
//
Query:       MMETSP1174-20130828|1834_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 309.13
//
Query:       MMETSP1174-20130828|1849_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 443.96
//
Query:       MMETSP1174-20130828|1850_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   14.5   0.1     0.0038   13.7   0.0    1.4  1  TIGR03906 quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
     0.0044   12.6  30.4     0.0054   12.3  21.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.15   10.0   4.7      0.045   11.7   0.3    2.2  3  TIGR02044 CueR: Cu(I)-responsive transcriptional regulator
       0.31    6.4  28.2        0.5    5.7  19.5    1.3  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.54    8.0  10.3       0.77    7.5   0.6    2.9  3  TIGR02978 phageshock_pspC: phage shock protein C
        3.2    4.4  19.3        3.5    4.3  12.8    1.5  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR03906  quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.5e-06    0.0038     253     313 ..      80     143 ..      63     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.5e-06
   TIGR03906 253 rvtltaGvtdvariyrhlkdelGfaevGfaPvtsg.pessfnls..deelkevfasmkalgrey 313
                   tl + + +++   + lk++l f+ev f  ++ + +++ +n++  ++el+ v+++ k++ ++y
  MMETSP1174-20130828|1850_1  80 NRTLENKIKELEDTNHELKEQLEFFEVKFEDAAKEkDKAMYNFDqiQDELQGVLKATKEMENQY 143
                 45889999999999***************9887651667788873369************9998 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3  21.1     8e-06    0.0054     280     478 ..      56     248 ..      49     276 .] 0.49

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8e-06
   TIGR02168 280 eeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqa 478
                 ++ +e+ qk  ++  +  +rl+++ + l+++ ++le++++el+eqle  e k e++++e+++   ++++++ el+ + ++ +e+e+++   + + + l+ ++e+ ++e+ +l+e+l+ ln el   +++ +q +e++e +++e+e l   l+ a+ +lk+ +e+l++    l++++       +a +el++e + + + 
  MMETSP1174-20130828|1850_1  56 DQVVEAWQKSGEASDEVHARLTEKNRTLENKIKELEDTNHELKEQLEFFEVKFEDAAKEKDKAMYNFDQIQDELQGVLKATKEMENQY---QLHHNPLNFNAENTAKEIIQLKEKLNILNGELLISQDDNTQQKENHEAQRKERERL---LQSANGKLKASDERLKSMSIDLTKANDLVLINDAASKELKKESDGKITS 248
                 4444444555555555555666666666666666666666666666666666666666666666666666666666666666643333...33444455566666666666666666666666666666666666655555555555...3444455555555555555444444433333333333332222222222 PP

>> TIGR02044  CueR: Cu(I)-responsive transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   6.6e-05     0.045      61     108 ..      53     100 ..      46     107 .. 0.85
   2 ?   -0.3   0.0      0.33   2.2e+02      62     106 ..      96     140 ..      94     149 .. 0.73
   3 ?   -2.6   0.1       1.8   1.2e+03      69      97 ..     229     255 ..     212     270 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.6e-05
   TIGR02044  61 eeikellslandrerksadvkartlekvaelerkiselqeikdqleel 108
                 e   ++++ +++   +s +v+ar  ek + le+ki+el+  +++l+e 
  MMETSP1174-20130828|1850_1  53 ESKDQVVEAWQKSGEASDEVHARLTEKNRTLENKIKELEDTNHELKEQ 100
                 55567899999***************************9988888764 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.33
   TIGR02044  62 eikellslandrerksadvkartlekvaelerkiselqeikdqle 106
                 e+ke l++++ +   +a+ k++++ ++++++ +++ + + ++++e
  MMETSP1174-20130828|1850_1  96 ELKEQLEFFEVKFEDAAKEKDKAMYNFDQIQDELQGVLKATKEME 140
                 566777777777778888888888888888888777666666555 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.8
   TIGR02044  69 landrerksadvkartlekvaelerkise 97 
                 l+nd   +s ++k+ +  k++ ++  +se
  MMETSP1174-20130828|1850_1 229 LINDA--ASKELKKESDGKITSMKIALSE 255
                 44443..3555555555555555544444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  19.5   0.00073       0.5     268     445 ..      58     243 ..      50     276 .] 0.36

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00073
   TIGR02169 268 leeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereie....eekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkrel.drll...eelkrleeelaelkaelerieekiaeleeele 445
                 + e+ +k  e++ ++++   e+ +++ +k++el+   ++l++++++ e + eda++++ ka  + d+++ e++ + ++ +    +++ + + l+ + ++ ++e  +l+++l+ ++ e   +++   ++ke+ e+ ++e++ l +    +l+   e+lk ++ +l +++  +    ++ +el++e +
  MMETSP1174-20130828|1850_1  58 VVEAWQKSGEASDEVHARLTEKNRTLENKIKELEDTNHELKEQLEFFEVKFEDAAKEKDKAMYNFDQIQDELQGVLKATKemenQYQLHHNPLNFNAENTAKEIIQLKEKLNILNGELLISQDDNTQQKENHEAQRKERERLLQSAnGKLKasdERLKSMSIDLTKANDLVLINDAASKELKKESD 243
                 444444444444445444445555555555555555555555555555555555555555555544444444433222210001233344444444444444444444444444444444444444444444444444444332210222200011122222222222211111112222222221 PP

>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.4    0.0037       2.5      73     106 ..      59      93 ..      50     106 .. 0.80
   2 ?   -1.1   0.1      0.53   3.6e+02      82     106 ..     118     142 ..      95     156 .. 0.67
   3 ?    7.5   0.6    0.0011      0.77      70     108 ..     183     222 ..     168     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0037
   TIGR02978  73 kkfwqaget.pkealrevkeelrrleerlrevEry 106
                  + wq+  + + e+ +++ e+ r le++++e+E++
  MMETSP1174-20130828|1850_1  59 VEAWQKSGEaSDEVHARLTEKNRTLENKIKELEDT 93 
                 5678877665888999*****************85 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.53
   TIGR02978  82 pkealrevkeelrrleerlrevEry 106
                 +   +++++ el+ + +  +e+E+ 
  MMETSP1174-20130828|1850_1 118 AMYNFDQIQDELQGVLKATKEMENQ 142
                 4445667777777777777777765 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0011
   TIGR02978  70 evkkkfwqaget.pkealrevkeelrrleerlrevEryvt 108
                 + +k+ ++a ++ ++++l++ + +l++ +erl+++   +t
  MMETSP1174-20130828|1850_1 183 TQQKENHEAQRKeRERLLQSANGKLKASDERLKSMSIDLT 222
                 2233444444445999******************976555 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  12.8    0.0052       3.5     112     285 ..      79     250 ..      53     255 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0052
   TIGR01843 112 fpdillsae.d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskard.....rlqrliirsPvdGtvqslk 285
                  +  l +++ +  + ++ +keq + fe + +  ++++++   + +q ++el+g+ ++++++++q +l ++ l+   + ++k+++      +l+++++ l+gel +++ + +++k++ ++ +++++     + + +  +l+ + +rl++++  l+ka+d     +++  +++   dG++ s+k
  MMETSP1174-20130828|1850_1  79 KNRTLENKIkEleDTNHELKEQLEFFEVKFEDAAKEKDKAMYNFDQIQDELQGVLKATKEMENQYQLHHNPLNFNAENTAKEII------QLKEKLNILNGELLISQDDNTQQKENHEAQRKERER----LLQSANGKLKASDERLKSMSIDLTKANDlvlinDAASKELKKESDGKITSMK 250
                 3333333332245889999**************************************************999998888887776......567777888888888888888877777666666554....4555666777777777777777777765222224566667777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       439  (0.107021); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 639.11
//
Query:       MMETSP1174-20130828|1853_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 213.91
//
Query:       MMETSP1174-20130828|1863_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   18.0   3.5     0.0003   18.0   2.4    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.4   7.3e-08    0.0003      26      53 ..      42      69 ..      36      70 .] 0.94

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.3e-08
   TIGR00599 26 slRChvCkdffkaPvltsCsHtFCslCi 53
                +lRC +C    ++Pv  +CsH FC +C+
  MMETSP1174-20130828|1863_1 42 TLRCAICLGSPEKPVKLPCSHEFCRICV 69
                69*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|1878_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|1874_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   25.3   0.1    2.8e-06   24.7   0.1    1.3  1  TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR03215  ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   6.9e-10   2.8e-06       2     101 ..      39     137 ..      38     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 6.9e-10
   TIGR03215   2 vkvaiiGsGnigtdllikllr.sevlelallvGidpesdGlararelgvetsaeGvdalleeedidivfdatsakahaenaklleelgkividltPaavGp 101
                 v+ +i+G+G ++td+  ++lr +e  e+ + vG  ++    a a +++v +++ G +al +++++di++ at   +ha+ a++  ++gk v+   P a+ p
  MMETSP1174-20130828|1874_1  39 VRWGIMGTGMMATDFT-RVLRtAEGAEI-AAVGARSQGSASAFADKFNVPVAHAGYEALAADPSVDIIYIATLPDSHAALAEMCLRAGKPVLMEKPIAISP 137
                 5778**********86.56662666666.56899888889999****************************************999999998888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.79
# Mc/sec: 656.60
//
Query:       MMETSP1174-20130828|1890_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 579.95
//
Query:       MMETSP1174-20130828|1894_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.24s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 127.36
//
Query:       MMETSP1174-20130828|1893_1  [L=807]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-201  668.3  30.7   4.6e-201  667.8  21.3    1.0  1  TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase


Domain annotation for each model (and alignments):
>> TIGR01104  V_PPase: V-type H(+)-translocating pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  667.8  21.3  1.1e-204  4.6e-201       5     693 ..      59     801 ..      56     804 .. 0.90

  Alignments for each domain:
  == domain 1    score: 667.8 bits;  conditional E-value: 1.1e-204
   TIGR01104   5 llivvlaviglayallqavlvlkvdvgtekmaeiskaiseGataflfreyktvavllvvlavlilvllgsvegfsd.................lsavafllGavtsllaGylGmkiatranarvtlearkglgkalivafrsGa...vmGllla..algllvla...ililvfksylgddwegl.....iealvglglGassialfarvgGGiytkaadvgadlvGkveagiPeddPrnPaviadnvGdnvGdvaGmgadlfesyvesvvaalvlas....isslglnadltallyplvlssvgilvsllttlfvk...ikavkeiekalkkqlllstvlmlvgvavisavalptsftslnfatqkevksf.qlflcvvvGlvaglligfvteyytstaysPvrdvadssktgaatnviaGlavglksviipiliiaaaiivsyel............aglyGiaiaavgllstigivlaidayGPisdnaGGiaemaglseevrertdaldavGnttaaigkGfaigsaalvalalfaafveeaa......ikkvdvlspkvliGllvGallpylfssltlkavGraalklveevrrqfrtiPgllegtakpdyarcvdistkasikemiiPgllavltPlvvglllg............vealsgllaGalvsGvqiaisasntGGaWdnakkyieagseharslglkgseahkaaviGdtvGdPlkdtsGPslnilikllavvslvlapvlats 693
                 +l+  + v g +y+ + +++vl +d+gt+ m+ +s+ i eGa+ fl+ +y  +a + +v+  li+++   + +  d                 + a af++Gav+s++aGyl m +a+r+n rv+ +ar++ + al+++fr+Ga   v+ ++l+  +++ll l+   + +  f+  +g + + l        +vg+g+Gas +alf+++gGGiytkaadvgadlvGkv+  +PeddPrnPaviad vGd vGd+ G +ad+fes +  +++a++l+      + l+ +++++ +++plv+ ++ i vs ++ l+v    +  ++e+++ lk++  l+ vl + g      +++   +++       + + + ++  c vvG++ + +i+  t+y+t +ay+Pv+++a++s+tg++tn+i+G+avg+ks++ip l++ +a++ +y+l            agl+G+a+a++g+lst+  +l+++ yGPi+dnaGGiaem++ s+ vr++td lda+Gn t+ai+kG++igsaal+++ +f+af+ e +      +k vd++ p++l+G l+G++++++f  lt+ avG++a ++v evrrqf + P+++  +++pdy  cv + t a++kem  Pgll v +P ++gl++             +++l++ l+  +v+G+++a++  n GGaWdnakkyie g     + g k+s+ahka+v+GdtvGdP+kdt+GPsl ++ikll++  lvl p++ + 
  MMETSP1174-20130828|1893_1  59 VLVLFVCVYGAIYSYWLSQFVLTKDTGTNEMRMVSDPIREGAEGFLKVQYSAIARMAIVVSGLIFLSYYLRAAPDDgkplngvqalgngylgiVCAAAFVIGAVCSAIAGYLSMWVAARTNIRVASAARRTYAEALVLCFRGGAfsaVLDITLCviGVTLLYLSlwaVHVSSFRANFGYEEAPLrstdiPMLMVGYGFGASFVALFMQLGGGIYTKAADVGADLVGKVDSSLPEDDPRNPAVIADLVGDMVGDCVGSSADVFESVAAEIIGAMILGGtlakEAGLDESQSMSFIFFPLVVHALDIFVSSIGILYVCvdtVVGQEEPMRPLKRGYQLALVLAFFGFIAACRWMF--WLED-------HPQVWmHFSGCGVVGMITAYVIMSSTQYFTDYAYEPVKSIAKASETGHGTNIITGVAVGMKSTVIPTLAVSVAVVSAYHLartsglgddghaAGLFGTAVATMGMLSTACYILSMNNYGPIADNAGGIAEMSQCSDSVRDTTDRLDAAGNVTKAITKGYSIGSAALACFLMFGAFMDEFSqysgtpFKVVDIAVPEILVGGLLGTMMVFYFVGLTVAAVGKTAGEVVREVRRQFAEHPDIMTFKTRPDYRSCVSLVTTAALKEMRYPGLLCVGMPTMTGLVFRfigeatdrpllgAQVLASYLIFGTVTGIMMALFLDNVGGAWDNAKKYIELG-----NHGGKNSDAHKASVTGDTVGDPFKDTAGPSLHVVIKLLSTTILVLGPLFIKA 801
                 56778899**********************************************************98777777757788888999999999999************************************************733355555540044455444111234457778887766551111045689********************************************************************************9875433456777888889********************9984455667999******************444444443..3333.......233340455799********************************************************************************************************************************************************************987533333478899*****************************************************************************************999999*******999**************************************.....7789*******************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.91
# Mc/sec: 1170.50
//
Query:       MMETSP1174-20130828|1897_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.68
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|1902_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.24s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 240.51
//
Query:       MMETSP1174-20130828|1903_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|1910_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|1913_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|1914_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 470.76
//
Query:       MMETSP1174-20130828|1919_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|1920_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|1928_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1174-20130828|1930_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|1931_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1174-20130828|1933_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.3   0.1       0.14    9.5   0.0    2.1  2  TIGR00646 MG010: DNA primase-like protein


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   8.4e-05      0.35     153     192 ..      25      64 ..      18      74 .. 0.84
   2 !    9.5   0.0   3.5e-05      0.14     151     182 ..      96     127 ..      80     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 8.4e-05
   TIGR00646 153 kikkvvlcldndlagkvaaknlkeilkkagfivkvvelka 192
                  i+  +l +d d +g  +a++lk  +   gf  k   +  
  MMETSP1174-20130828|1933_1  25 EIREAFLLFDADRSGTISATELKTAMASLGFEGKNQAIFQ 64 
                 68899**************************988665554 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 3.5e-05
   TIGR00646 151 qkkikkvvlcldndlagkvaaknlkeilkkag 182
                 ++ i kv+  +d+d +gk + +n+k++ k+ g
  MMETSP1174-20130828|1933_1  96 KEDIAKVFQLYDDDNTGKISLRNMKRVAKELG 127
                 5689**********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|1932_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1613.87
//
Query:       MMETSP1174-20130828|1935_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1024.35
//
Query:       MMETSP1174-20130828|1940_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|1941_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|1945_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   40.4   0.0    2.5e-11   40.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.5e-05   22.4   0.2    2.5e-05   21.7   0.2    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.2e-14   2.5e-11      23     179 ..      51     196 ..      32     203 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.2e-14
   TIGR03903  23 aRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLiv 179
                    + e+ +   L+hP+i +L+D  e   g +  + e   G  l  ++a +G  + a+    +  ++D +   hd+ +vh DLk +n +  ++ +    k++DFG +  l   +              Gs  Y aPe   g+    + D+++ G+i 
  MMETSP1174-20130828|1945_1  51 DMLKNELMIMSSLNHPHIAELVDVYEVSSG-IHMIEEICTGGELHSRMAEKGGFSEADARVHIRVMVDVMRYMHDKKIVHNDLKLENWLFENESNGALLKLIDFGFSKQLGSEKL---------MGAQGSTMYMAPEVFTGNY-DMQCDMWSIGVIA 196
                 5578899999*****************995.7899********************999887777888***************************************976643332.........2234777777777777653.4567777777765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   1.2e-08   2.5e-05      79     139 ..      88     159 ..      49     185 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.2e-08
   TIGR03724  79 iegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkks 139
                   g +l+  + ek          +++ + +++  +H+++ivh+Dl  +N +++    +  l liDfG +k+ 
  MMETSP1174-20130828|1945_1  88 CTGGELHSRMAEKGGfseadarVHIRVMVDVMRYMHDKKIVHNDLKLENWLFEnesnGALLKLIDFGFSKQL 159
                 4566666666665445555555566777788899******************73332334679*****9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1086.02
//
Query:       MMETSP1174-20130828|1947_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|1951_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 1444.27
//
Query:       MMETSP1174-20130828|1955_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 776.10
//
Query:       MMETSP1174-20130828|1961_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|1962_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 169.11
//
Query:       MMETSP1174-20130828|1958_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   11.6   1.9      0.069   11.4   0.1    1.9  2  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.7e-05     0.069      39     108 .]      50     119 ..      43     119 .. 0.93
   2 ?   -2.1   0.2      0.27   1.1e+03      67      96 ..     326     355 ..     316     360 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.7e-05
   TIGR04102  39 qseerkaeveallaehelfaeievdadkeeniaeLeallnkpktvtvektpnrndpCsCGsgkkykkCCa 108
                 q e+ + +v ++ +++el a ++v  d++ +  +L+++ +k+++ t +k+ ++ +p s     ++kk C+
  MMETSP1174-20130828|1958_1  50 QYEDDEGDVITITSDEELQAALQVAGDMSLKCFKLNVFPTKDSALTHTKNTSKTEPQSRANRCQWKKTCG 119
                 56677789999**********************************************************7 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.27
   TIGR04102  67 eeniaeLeallnkpktvtvektpnrndpCs 96 
                 +e  ++  +  + ++t++v+ +++r dp +
  MMETSP1174-20130828|1958_1 326 KETAEKRGGCSSSKNTTKVTSKASRVDPSP 355
                 455555555666778888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1754.18
//
Query:       MMETSP1174-20130828|1963_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 736.68
//
Query:       MMETSP1174-20130828|1967_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-161  535.5   0.0   1.9e-161  535.3   0.0    1.0  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    5.4e-54  181.4   0.0    7.4e-54  180.9   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    8.5e-24   81.9   0.0    1.3e-23   81.4   0.0    1.3  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    2.3e-21   74.1   0.0    3.8e-20   70.1   0.0    2.2  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      2e-18   64.2   0.0    3.5e-18   63.4   0.0    1.4  1  TIGR01141 hisC: histidinol-phosphate transaminase
    4.5e-17   60.0   0.0      7e-17   59.4   0.0    1.4  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    4.3e-16   56.7   0.0    1.5e-15   54.9   0.0    1.7  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    5.5e-16   56.2   0.0    2.2e-14   50.9   0.0    2.1  2  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.5e-15   53.6   0.0    2.1e-14   51.0   0.0    2.2  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    1.1e-14   51.9   0.0    4.2e-14   50.0   0.0    1.7  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    2.7e-07   27.2   0.0    8.4e-06   22.2   0.0    2.1  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.3   0.0  5.1e-164  1.9e-161       2     400 ..      63     460 ..      62     462 .. 0.99

  Alignments for each domain:
  == domain 1    score: 535.3 bits;  conditional E-value: 5.1e-164
   TIGR03542   2 kvnehflklkssylfseiakkvkefrkknpeadiirlgiGdvtqPlakaviealkeaveelaseetfrGyGpeqGldllreaiaeeeykgridpeeifisdGakcdvarllelfgsdktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaaglkvyGGenaPylWvklpegissedffdkllkeaevvgtPGsGfGssGeGfvrlsalgkredivealerike 400
                 ++n +f kl+++ylf+ei ++ + f ++np+a++i lgiGd+tqP+++++   l + ++ l +++t+ GyG+e G   lr++i+++ y gri pee+f+sdGakcd+arl+ +fgs+ + avqdP+yPvyvd+av++G++g++d+d++y++ivy+pc  +n+f+P++   ++ d+i +CsPnnPtG ++t+ ql++lv +ak+++s+i+fdaay+ fi+ +++Pksi+eiega +c ie++sfsk +GftGvrlg++vvPk lk++dg+++ ++++r+++t fnGas++vq +++a l +egl +i+ +i+yy+ na++l k++e+ g+k yGGe++Py++v ++   ss+d+f k+l+eaevv+tPG GfG+ GeGf+rlsa+ +re++vea+er+k+
  MMETSP1174-20130828|1967_1  63 TRNANFAKLQAGYLFPEIGRRRNAFLEENPDANLISLGIGDTTQPIPEHILAGLVNGAKALGESKTYTGYGAEAGKAGLRDKISSKLYGGRIAPEEVFVSDGAKCDIARLQMMFGSKVVTAVQDPSYPVYVDTAVIMGQTGEMDSDSQYSNIVYMPCNPDNGFFPDFDALPRADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVPKSIFEIEGADTCCIEVNSFSKYAGFTGVRLGWAVVPKALKFSDGSPVWNDYNRIMSTGFNGASNLVQDGGAACLDDEGLAEIQTLIDYYLVNADMLMKTVEELGYKAYGGEHSPYVFVDIKG-ESSWDMFTKILTEAEVVTTPGAGFGPGGEGFIRLSAFCTRENCVEACERLKK 460
                 79*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************976.9*************************************************98 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.0     2e-56   7.4e-54      11     382 ..      74     460 ..      65     461 .. 0.85

  Alignments for each domain:
  == domain 1    score: 180.9 bits;  conditional E-value: 2e-56
   TIGR03540  11 PylfaeidklkaekkakG..vdvidlgiGdPdlptpkeivealkkaaekpenhr....yPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllag...........gepyelPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkel........iaalgkvksnvdsGvfqaiqeaaiaaleeee.evvkelrkvykkrrdllvealkkiGldvkkpkatfylWvkvPeGytsaefakklleeagvvvtpGvgfGesGeGyirisltvseerlkeaverlkk 382
                  ylf ei + ++  +++   +++i+lgiGd  +p p++i+  l++ a+   + +    y +++G++ +r++++    k +g  + pe ev    G+k  ia l++ f  +  +  v dP+yPvy  ++ ++g           ++  ++P + +n+f+Pd+da+p     +a +++   PnnPt+  a++  ++++v+ ak ++ i+v+daay+  +  +  + s++e++ga   +ie++s+sk    tG r+g+av  k l         +  +++ s    G+ + +q+ + a l++e  + +++l++ y    d+l+++++++G+++   + + y++v + +G +s ++ +k+l ea+vv tpG gfG  GeG+ir+s   ++e+  ea erlkk
  MMETSP1174-20130828|1967_1  74 GYLFPEIGRRRNAFLEENpdANLISLGIGDTTQPIPEHILAGLVNGAKALGESKtytgYGAEAGKAGLRDKIS---SKLYGGRIAPE-EVFVSDGAKCDIARLQMMFGSK-VVTAVQDPSYPVYVDTAVIMGqtgemdsdsqySNIVYMPCNPDNGFFPDFDALP-----RADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVPKSIFEIEGADTCCIEVNSFSKYAGFTGVRLGWAVVPKALkfsdgspvWNDYNRIMSTGFNGASNLVQDGGAACLDDEGlAEIQTLIDYYLVNADMLMKTVEELGYKAYGGEHSPYVFVDI-KGESSWDMFTKILTEAEVVTTPGAGFGPGGEGFIRLSAFCTRENCVEACERLKK 460
                 6*******999998877522779*******************9998876543332223667788888998876...46788889997.666678*********9988554.57789********998888762222222111123468**************998.....7999***********************************************************************************9887622111111455667777777899999*********9886378999************************************.99**************************************************97 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.4e-26   1.3e-23       2     349 ..      96     460 ..      95     461 .. 0.76

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 3.4e-26
   TIGR03537   2 lydfGtGdpkeptddfirkalld...avpevsq...ypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealk...........vklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyaeiysee.kpasvlevglenv..lafhslskrsGmtGyrsgfla.......Gd.eelvsalrklrasvGvaspefvqaaataawsddahvaerrki..fkrkrdlfleflakkGlealasdatfylwvkvpegidaksyalrlleeGivvapGeafgageeeyvrvalvptleeceeairlwer 349
                 l  +G+Gd ++p ++ i   l++   a+ e      y + +G++ lr+ i+    + +g ++ p+ ev+ s G+k  i  l++ f      +   ++ +p+ypvy   a+  g                +  ++++gf+ +      + l ++ ++    p nptG  a++  l++ ++ a+  g i++ d  ya    ++  p+s++e++  ++  + + s sk +G tG r g           d + + + ++++ ++      ++vq   +a  +d+  ++ +  i  +  + d++++ +++ G +a  ++ + y++v + +    + +++ l e+ +v +pG  fg+g+e+++r++   t+e+c ea ++ ++
  MMETSP1174-20130828|1967_1  96 LISLGIGDTTQPIPEHILAGLVNgakALGESKTytgYGAEAGKAGLRDKISS---KLYGGRIAPE-EVFVSDGAKCDIARLQMMFGS----KVVTAVQDPSYPVYVDTAVIMGQTGEMdsdsqysnivyMPCNPDNGFFPDF-----DALPRADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDdVPKSIFEIEGADTccIEVNSFSKYAGFTGVRLGWAVvpkalkfSDgSPVWNDYNRIMSTGFNGASNLVQDGGAACLDDEGLAEIQTLIdyYLVNADMLMKTVEELGYKAYGGEHSPYVFVDIKGESSWDMFTKILTEAEVVTTPGAGFGPGGEGFIRLSAFCTRENCVEACERLKK 460
                 5678***************998632366665541126678999999999886...6799*****8.899****************87....6667889*******9988887755433000000001002333444444444.....45667999****************************************98776659******987654126789************9875411111123313345667777665445566778877777776665554444333377899***************************9999999999999999********************************988766 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0     1e-22   3.8e-20      22     357 .]      95     459 ..      84     459 .. 0.79

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 1e-22
   TIGR03539  22 GivdlsvGtPvdpvpalirealaeaadapgyPqt...aGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagae.avaaddlteldp...................ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.avsvldpevcggdlegllavhslskrsnlagyragfvaGdeal.......vaellevrkhaGlm.vpaPvqaamvaaladdehvaeqk..eryaarrellkaalekaGfriehseaglylWa.trgedaretvdr.laelGilvaPGdfygeagkefvrvaltatderiaaaverlt 357
                  ++ l +G    p+p+ i + l++ a+a g  +t   +G+e+ ++++ d++  +l    + +e+v+   G+k  +a l +++G +   +v  P  +yP y  +a + g +  + +d+     +                    + ++i++ sP nPtG  ++  +l+k+va a+++g +++ d  y+ +   ++ + s+++    +g  +  + v s+sk + ++g r g+++  +al       v +  +    +G+   +  vq+  +a l+d+  ++ q   + y    ++l++++e+ G++    e + y++   +ge++++  ++ l+e  ++++PG  +g+ g+ f+r++  +t e+  +a erl+
  MMETSP1174-20130828|1967_1  95 NLISLGIGDTTQPIPEHILAGLVNGAKALGESKTytgYGAEAGKAGLRDKISSKLYGGRIAPEEVFVSDGAKCDIARLQMMFGSKVVTAVQDP--SYPVYVDTAVIMGQTgEMDSDSQYS--NivympcnpdngffpdfdalPRADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDvPKSIFEI---EGADTCCIEVNSFSKYAGFTGVRLGWAVVPKALkfsdgspVWNDYNRIMSTGFNgASNLVQDGGAACLDDEGLAEIQTliDYYLVNADMLMKTVEELGYKAYGGEHSPYVFVdIKGESSWDMFTKiLTEAEVVTTPGAGFGPGGEGFIRLSAFCTRENCVEACERLK 459
                 5899**************99999999988877663335888888888888888877777999*********************9988888777..6****98888877552455554322..1112222334455555544456899*****************************************99877758899985...46668899******************9998888322211122222223344554234567888888888887777775337899*************************9963699*****976528999**********************************995 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   9.5e-21   3.5e-18      57     332 ..     138     443 ..     117     461 .. 0.74

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 9.5e-21
   TIGR01141  57 alelkealakylg...veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked...........gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee....asvlellaeypnlvvlrTlSKafgLAglRvGyaianaei........iealek.vrapyn.vsslaleaavaalrdsd..kiektveevkkererlleelkkleglevyeS.kaNFvlikvke..daeelleallekgiivRdlksaeglleeclRit 332
                 ++ l+ +++++l    + +e++++++G+   i  l + f   +  ++v +p+y +Y  +a i g     ++ + +            +  ++++  +a  +++++ ++sPnnPtG   +r ++ek+++++ +   ++V D AY  F +     +s +e+       + + ++SK  g+ g+R+G a++ +++         + +++ +++ +n  s+l+++ + a l+d+   +i+  ++    + ++l++ +++l g + y + +  +v++++k     + + + l+e++++    + + +  e+++R++
  MMETSP1174-20130828|1967_1 138 KAGLRDKISSKLYggrIAPEEVFVSDGAKCDIARLQMMFGS-KVVTAVQDPSYPVYVDTAVIMGQTGE-MDSDSQysnivympcnpDNGFFPDF--DALPRADVIHFCSPNNPTGVAATRPQLEKLVAHAkAqGSIIVFDAAYAPFIRGddvpKSIFEIEGADTCCIEVNSFSKYAGFTGVRLGWAVVPKALkfsdgspvWNDYNRiMSTGFNgASNLVQDGGAACLDDEGlaEIQTLIDYYLVNADMLMKTVEEL-GYKAYGGeHSPYVFVDIKGesSWDMFTKILTEAEVVTTPGAGFGPGGEGFIRLS 443
                 556777776665558899**************999888765.55667889******988888775432.2222222223333221112223333..6889****************************9975689************9856644444444444456779******************988753222222245555525678986799************999999*********************.79988886899******9874555666677788888777777766678888876 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.9e-19     7e-17      62     213 ..     153     325 ..     132     450 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.9e-19
   TIGR01140  62 gldaesvlavnGaqeaiqllprllapkrv.lvlaptyseyaralraagaevvels....................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea....lpglvVlrSltKffglaGlRlGfvvAepal 213
                 ++++e+v +  Ga+  i  l+++++ k v +v  p+y  y +++ + g + ++ s                    d+++l+    +ad++ ++ PnNPtG + ++ +l++l++++ka+g ++v D A++ f + +++ +   +        + + S+ K  g+ G+RlG++v ++al
  MMETSP1174-20130828|1967_1 153 RIAPEEVFVSDGAKCDIARLQMMFGSKVVtAVQDPSYPVYVDTAVIMGQTGEMDSdsqysnivympcnpdngffpDFDALP----RADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVPKSIFEiegaDTCCIEVNSFSKYAGFTGVRLGWAVVPKAL 325
                 35699**********************999999***************9988888999***********988877777776....**********************************************9876554444333332666788******************988776 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0     4e-18   1.5e-15      25     397 ..      88     460 ..      81     464 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 4e-18
   TIGR01265  25 kkpeeekpviklslGdPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielviealanaganiLvPrPgfplYetlakalgl...........evrkydllpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplakla.skvPvlslggiskrwlvPGWrlGWlivvdpkgiledt.vlqglkkllql.ildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvkPegamyllvklelelleeikdDvdFceklvkEesvillPgsale..lenylRitltveksvleealeRike 397
                  + +++ ++i l++Gd +     +  +  ++  ++  +s+++ gY++ +G    r+ + + l     +++ +++v+++ G++  i  + + +  +     v  P++p Y   a  +g            ++ +  + p++++  d+d l         ++    P+nP+G   +r  lek+v+ a+ ++ +i+ D  Y+ ++ gd    ++ +++      + +++ sk     G rlGW +v    +    + v +  ++++++   +++ lvq+   + l +      ++ i+    na++++++++e+ g ++   e + y++v+++ e         d ++k+++E +v+  Pg  ++   e+++R++  +  +   ea+eR+k+
  MMETSP1174-20130828|1967_1  88 LEENPDANLISLGIGDTTQPIPEHILAGLVNGAKALGESKTYTGYGAEAGKAGLRDKISSKLY---GGRIAPEEVFVSDGAKCDIARL-QMMFGSKVVTAVQDPSYPVYVDTAVIMGQtgemdsdsqysNIVYMPCNPDNGFFPDFDALPR-----ADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVPKSIFEIEgADTCCIEVNSFSKYAGFTGVRLGWAVVPKALKFSDGSpVWNDYNRIMSTgFNGASNLVQDGGAACLDDEGLAEIQTLIDYYLVNADMLMKTVEEL-GYKAYGGEHSPYVFVDIKGESS------WDMFTKILTEAEVVTTPGAGFGpgGEGFIRLSAFCTRENCVEACERLKK 460
                 55677889999999998877666666777777788889********************99887...89************99888654.44445555567899******988877653121121111112223346789999999998864.....5689999******************************************9999999987256889***************************999999999999877662678899**********9999999999999999*******999987.5577789**********98765......5889*****************733699********************97 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0     6e-17   2.2e-14      49     230 ..     134     325 ..     127     335 .. 0.80
   2 ?    3.0   0.0     0.022       8.2     311     359 .]     412     462 ..     393     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 6e-17
   TIGR03947  49 eslGgeklraaladrlagGd..aekvlvthGsseaiylvltallrPGdevv..vvdpayhslselavalg...........akvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaep...lpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdl 230
                    G+++lr+ ++++l gG   +e+v+v+ G+   i+    + +  G +vv  v+dp+y   ++ av +g            ++  +p +++++f pd d+l     +r+ ++    P+nPtG++ +  +l++l+++a++ g+++++daa+a ++   ++   + e   a    i ++ +sk  G++G+r+GW+v+Pk l
  MMETSP1174-20130828|1967_1 134 AEAGKAGLRDKISSKLYGGRiaPEEVFVSDGAKCDIAR---LQMMFGSKVVtaVQDPSYPVYVDTAVIMGqtgemdsdsqySNIVYMPCNPDNGFFPDFDAL-----PRADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVpksIFEIEGADTCCIEVNSFSKYAGFTGVRLGWAVVPKAL 325
                 5679999*******999996336899999999887763...3445578887668999999999999987722222222222346678999999999999998.....8999999999************************************998766411134445555667889********************987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.022
   TIGR03947 311 tdlCerllarhgvlvvPGscfGaadr..vrlGfggssaeleaGlerlsall 359
                  d+  ++l++  v++ PG+ fG   +  +rl   + ++  ++  erl ++l
  MMETSP1174-20130828|1967_1 412 WDMFTKILTEAEVVTTPGAGFGPGGEgfIRLSAFCTRENCVEACERLKKVL 462
                 467789999*************9877789**99999998888888887765 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   5.6e-17   2.1e-14      23     394 ..      88     461 ..      64     462 .. 0.70

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 5.6e-17
   TIGR03538  23 vtppadleeialsiGePkhatPafvlealvenleelsk......yPttkGlpelreaiaeWlerrfelpag.vdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallag...........aepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfva.......Gd.aellkeflryrtyhGcampiavqlasiaaWede..khvrenralyrekfaavleilgav.ldlelPdasfylWlkvpdgddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlalvaeleecveaaerikkl 394
                 +  + d + i+l iG+   + P+ +l  lv+  ++l +      y + +G++ lr+ i++ l   +    g + pe +v+   G++  +   ++  +   +k +  + +P y +y  +a++ g           +++++++c+++ngf pdfda+p     r+ +++ csP+nPtG   +  +l+kl++ a+  + ii  d  y+ +    ++ P  ++e     G      ++  +s+sk +   G+r G+          d + + +++ r  +      +  vq    a  +de  + ++   + y    +++++ ++++  +    + s y+++ +  +   ++  ++  e++v + pG+ +      +  Geg++rl+  +  e+cvea er+kk+
  MMETSP1174-20130828|1967_1  88 LEENPDANLISLGIGDTTQPIPEHILAGLVNGAKALGEsktytgYGAEAGKAGLRDKISSKL---YG---GrIAPE-EVFVSDGAKCDI---ARLQMMFGSKVVTAVQDPSYPVYVDTAVIMGqtgemdsdsqySNIVYMPCNPDNGFFPDFDALP-----RADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIR-GDDVPKSIFEIE---GA--DTCCIEVNSFSKYAGFTGVRLGWAVvpkalkfSDgSPVWNDYNRIMSTGFNGASNLVQDGGAACLDDEglAEIQTLIDYYLVNADMLMKTVEELgYKAYGGEHSPYVFVDIKGESSWDMFTKILTEAEVVTTPGAGF------GPGGEGFIRLSAFCTRENCVEACERLKKV 461
                 334567789********************998887754222233677788888888887533...33...325554.567677776654...3333334445555566777888766555544222222222225789*****************9.....6899****************************************9776.555899998864...33..34699*****************85311112222213467778776543333445567778888888883346667778888888888888877635667788999***99987777777777777788888899744......445899*******************9987 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   1.1e-16   4.2e-14      25     397 ..      88     460 ..      83     463 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.1e-16
   TIGR01264  25 vkPnPekkviklsiGdPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetla....ka..ldievklynl.....ladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalasls.sevPilslgGlakrllvPGWrlGWliihdrkgvlrd..vkdGlkk.lsqrilGpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkielekfkelksdvefveklveeesvfvlPgsifel..Pgylrvvltvpkavleeavsrike 397
                 ++ nP+ ++i+l iGd t     +  +  v+  k   +s++y Gy++  G+   r++i +        g +  ++v ++ G+   +   ++ +  +     v  P +p y   a    ++  +d + ++ n+      +d+ +  d++ l      ++ ++    P nP+G   +r  le+l+a a+ +  +i+ d  y+ ++  +   +++ +++ ++   + ++  +k     G rlGW ++    +   +  v +   + +s+   G++ lvq      l +     ++++++    nad++ +++ e+ G k+   + + y++v+i+ e         +++ k+++e +v   Pg+ f     g++r+   +  +   ea++r+k+
  MMETSP1174-20130828|1967_1  88 LEENPDANLISLGIGDTTQPIPEHILAGLVNGAKALGESKTYTGYGAEAGKAGLRDKISSKLY----GGRIAPEEVFVSDGAKCDIAR-LQMMFGSKVVTAVQDPSYPVYVDTAvimgQTgeMDSDSQYSNIvympcNPDNGFFPDFDALP-----RADVIHFCSPNNPTGVAATRPQLEKLVAHAKAQGSIIVFDAAYAPFIRGDDVPKSIFEIEgADTCCIEVNSFSKYAGFTGVRLGWAVVPKALKFSDGspVWNDYNRiMSTGFNGASNLVQDGGAACLDDEGLAEIQTLIDYYLVNADMLMKTVEEL-GYKAYGGEHSPYVFVDIKGESSW------DMFTKILTEAEVVTTPGAGFGPggEGFIRLSAFCTRENCVEACERLKK 460
                 5679*************98888888888999999999*********************98766....899999**9999998877754.45555555555689999999975541111221133333443432211156777777777664.....57899999******************************************99999999983578899********************98876655544577776652788999*******9999****9999999999*************99885.99***************988655......67899***************852258*******************986 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.3e-08   8.4e-06     243     321 ..     237     318 ..     230     326 .. 0.80
   2 ?    2.7   0.0     0.018       6.8     441     486 ..     386     434 ..     365     462 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.3e-08
   TIGR03801 243 alfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfv...ddfrsllaelpantil..vysfskyfgatGWrlgv 321
                 ++    P+nP++va ++ ++ekl++  +   +  +i+ D  y+ f    d  +s++    a+t +  v sfsky g tG rlg 
  MMETSP1174-20130828|1967_1 237 VIHFCSPNNPTGVAATRPQLEKLVAHAKA--QGSIIVFDAAYAPFIrgdDVPKSIFEIEGADTCCieVNSFSKYAGFTGVRLGW 318
                 566678********999999998765544..6779999*******83323468***9998888763379*************96 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.018
   TIGR03801 441 leelaeklygeefakylkkkl...kpvdvlfrlaeessivLLkgegfks 486
                 +eel+ k+yg e + y+  ++   ++ d+ +++ +e+++v  +g+gf+ 
  MMETSP1174-20130828|1967_1 386 VEELGYKAYGGEHSPYVFVDIkgeSSWDMFTKILTEAEVVTTPGAGFGP 434
                 578999**********976551115789*******************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.30s 00:00:00.85 Elapsed: 00:00:00.93
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|1972_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1174-20130828|1974_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.26s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 656.17
//
Query:       MMETSP1174-20130828|1978_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 602.20
//
Query:       MMETSP1174-20130828|1985_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 208.98
//
Query:       MMETSP1174-20130828|1985_2  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1174-20130828|1984_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 576.25
//
Query:       MMETSP1174-20130828|1992_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 272.98
//
Query:       MMETSP1174-20130828|1986_1  [L=1327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.21s 00:00:00.96 Elapsed: 00:00:00.90
# Mc/sec: 1946.11
//
Query:       MMETSP1174-20130828|1993_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 731.94
//
Query:       MMETSP1174-20130828|1990_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   18.7   0.2     0.0004   17.5   0.3    1.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0055   13.6   0.2      0.009   12.8   0.1    1.4  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3     2e-07    0.0004     281     423 ..     159     295 ..     150     344 .. 0.61
   2 ?   -3.7   0.0      0.52   1.1e+03     133     170 ..     429     466 ..     428     469 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2e-07
   TIGR01628 281 ekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmq...asaesrqlsigspvigaan...isgrh.qaaqqqavvtqavkqqlasqpl 423
                 +++  +Nl v N   +    ++   F+++ ++  + +m d+    +   F+  ++ e A++A   l   ++ gkPL +++ +        L+++  q    ++++   + + pv++ +     + +     qqqa++  +++qq +++  
  MMETSP1174-20130828|1990_1 159 QQEPSQNLHVSNYGVGTSACEMGSIFSKWCQVLDV-IMKDN----Q--CFINTATVEGASAAKAHLTDYLVRGKPLVINFSKDSPSH---LTAEALQnvqSQVSM--AAAAGPVSANQYptyAPQQTySNGQQQAMNA-HQQQQQQQTHS 295
                 46667899999999999999999999999999875.67776....3..489999**************************9766554...444444420023333..2233333333321111222212222222222.22222222222 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.52
   TIGR01628 133 fvhfedeesAkeAieklNgvllndkevyvgkfikkser 170
                  + f+d+ sA+  i k+  +        v +fi++ +r
  MMETSP1174-20130828|1990_1 429 LIIFKDQHSARVQIGKVLEASSSPPSLQVHRFIHQASR 466
                 57899***********9999999999999999998877 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.4e-06     0.009       6     103 ..     167     274 ..     162     307 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.4e-06
   TIGR01649   6 HvRnlpeevveadlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgn...akalsdvesvssgslal...........v 103
                 Hv n        ++ ++ +++ +v    v+ + +q ++  +++e+A+a+    t+    +rG+++ +++S     +   +   + + ++  ++++g+++            +
  MMETSP1174-20130828|1990_1 167 HVSNYGVGTSACEMGSIFSKWCQVLD--VIMKDNQCFINTATVEGASAAKAHLTDY--LVRGKPLVINFSKDSPSHLTAEalqNVQSQVSMAAAAGPVSAnqyptyapqqtY 274
                 55555555555555555555555554..55589***************99998875..78**********876544443311122333334555666665556656655551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 1605.47
//
Query:       MMETSP1174-20130828|1996_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|1991_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 698.94
//
Query:       MMETSP1174-20130828|2004_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 218.19
//
Query:       MMETSP1174-20130828|2006_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|2008_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|2012_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|2011_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-22   75.3   0.8    1.5e-21   74.5   0.1    1.6  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.5e-21   73.5   0.5    3.9e-21   72.9   0.0    1.5  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    7.4e-18   61.4   0.2    1.1e-17   60.9   0.1    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      2e-12   44.4   2.0    1.6e-07   28.3   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.2e-11   42.2   0.4    1.4e-09   35.4   0.3    2.0  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    5.7e-11   39.2   1.0    2.6e-10   37.0   0.2    1.9  2  TIGR00631 uvrb: excinuclease ABC subunit B
    1.1e-08   31.8   4.4    2.8e-08   30.4   3.1    1.7  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.5e-08   31.2   0.0    0.00014   18.1   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    9.7e-07   25.3   0.1    1.2e-05   21.7   0.0    2.0  2  TIGR00580 mfd: transcription-repair coupling factor
    2.1e-05   21.1   0.2     0.0019   14.6   0.1    2.5  2  TIGR00595 priA: primosomal protein N'
    2.8e-05   21.1   0.4     0.0048   13.7   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.51   1.9e+02      14      59 ..      60     105 ..      46     137 .. 0.66
   2 !   74.5   0.1     4e-24   1.5e-21     225     341 ..     274     390 ..     224     409 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.51
   TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvisP 59 
                   q+ +i  v +g d +     G Gk   + + a+ +  l+l  + 
  MMETSP1174-20130828|2011_1  60 AIQQLAIVPVGKGLDIVAQAQSGTGKTATFAIGALQLIDLGLRECQ 105
                 4555566666667788888888888888888888877776654443 PP

  == domain 2    score: 74.5 bits;  conditional E-value: 4e-24
   TIGR00614 225 kgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                   +  iiYC++r+kve +++eL+kk+ +    h+++e+s+r+ v  +f     +v++at     Gi+  +v  vi y+lp + e+Y   +GR+GR g k  ++ + +++Dva +r +
  MMETSP1174-20130828|2011_1 274 TITQAIIYCNTRRKVEWLTDELTKKDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMNLVTQKDVACMRDI 390
                 34556***********************************************************************************************************99976 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.84   3.1e+02       5      56 ..      47     100 ..      44     108 .. 0.81
   2 !   72.9   0.0     1e-23   3.9e-21     204     338 ..     255     389 ..     225     405 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.84
   TIGR01389   5 LkevF..GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLllkglt 56 
                 L+ vF  G+e+    q+  i  v +g d++a    G Gk   + + aL l +l+
  MMETSP1174-20130828|2011_1  47 LRGVFshGFEKPSAIQQLAIVPVGKGLDIVAQAQSGTGKTATFAIGALQLIDLG 100
                 566654477777888999999999999999999999999999999999876665 PP

  == domain 2    score: 72.9 bits;  conditional E-value: 1e-23
   TIGR01389 204 svvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkr 338
                  + ++e k + l++  +  + +  iiY+++R+kve l++ L++k +++   h+ +++++R+    +F     +v++at     Gid  +v  vi +dlP n e+y    GR+GR G+k  a+ l +++D+a ++ 
  MMETSP1174-20130828|2011_1 255 AIDREEWKLDTLVDLYEAVTITQAIIYCNTRRKVEWLTDELTKKDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMNLVTQKDVACMRD 389
                 455666677777777777777999**********************************************************************************************************98875 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   2.9e-20   1.1e-17      14     345 ..      58     368 ..      48     387 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 2.9e-20
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATv..gnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                 p a Q+ ++  + +g + + +a  G+GKT +  +++l  +       +  +vl ++P + L  +i+   +a  e +++++      G    ++  +  ++ +++++ Tp  +  l+ +++a   + +l++ ++DE  e+l+  RG l +     +++l+ +++v+  sAT+  + le+ ++++++        lvk +e     +++   +  ++  w+    l +l +++e+++  +++++++NtR + E l  +L+++      +++  H+ ++ ++R+ v a++++g+ r++++T  L  G+D ++v lvi+   p +    + RiGRs+ 
  MMETSP1174-20130828|2011_1  58 PSAIQQLAIVPVGKGLDIVAQAQSGTGKTATFAIGALQLID---LGLRECQVLVLAPTRELVLQIHSVFQALSEYMDVSV--LACIGGRRVRDDIQALQQGAQVVIGTPGRVLDLVNERRA-LDLGSLKVFILDEADEMLS--RGFLDSVK-DMFSSLRDDVQVCLFSATLplEVLETTQRFMSDP----LRILVKRDELTLDGIKQFYVA-IDREEWK----LDTLVDLYEAVTI-TQAIIYCNTRRKVEWLTDELTKKD----FTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGR 368
                 56667777777888999999*********999999887666...455789*********************999997665..5566888888888899999*********98776666555.5689*************98..77655543.56677789**********8224455555555444....458888877777777777666.8999997....5566666666654.5689***********999998764....56999**************************************************************84 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   2.6e-06   0.00095     262     351 ..      78     166 ..      73     190 .. 0.70
   2 !   28.3   0.0   4.2e-10   1.6e-07     476     534 ..     291     351 ..     265     393 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.6e-06
   TIGR00643 262 qGdVGsGKTvVavlallaviesG...yqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqe 351
                 q + G+GKT   ++ +l++i+ G    qv+++aPT  L  Q    ++ l e ++++v    g  +    ++  +++++G+ ++v+GT   + +
  MMETSP1174-20130828|2011_1  78 QAQSGTGKTATFAIGALQLIDLGlreCQVLVLAPTRELVLQIHSVFQALSEYMDVSVLACIGGRR---VRDDIQALQQGA-QVVIGTPGRVLD 166
                 6677*****************9954459*************988887777765555544444433...344456788885.89***9754333 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 4.2e-10
   TIGR00643 476 lkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                 l++ +  ++++v  +h+ ++  e++ v++eFr+++  +L+aT ++  G+dv ++++++ +d
  MMETSP1174-20130828|2011_1 291 LTDELtkKDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYD 351
                 444443467999******************************************9988665 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0065       2.4       2      51 ..      75     125 ..      74     152 .. 0.83
   2 !   35.4   0.3   3.7e-12   1.4e-09     127     329 ..     181     378 ..     155     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0065
   TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifal.Ptratanamyerlke 51 
                 +v +A  G GKt + ++ al+li+   ++  +++l Ptr ++  ++  +++
  MMETSP1174-20130828|2011_1  75 IVAQAQSGTGKTATFAIGALQLIDLGLRECQVLVLaPTRELVLQIHSVFQA 125
                 578999*******************99886666655999988877776655 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 3.7e-12
   TIGR01587 127 vliiDEvhayeey.tkalllallevlkdvdvkillmsAtlp.kllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapid..sLiQRlGRlaRygrkirenrev 329
                 v i+DE++ + +   +  +  ++  l+d dv++ l sAtlp + l++  + +  +  + +++++e     ++++ +  ++ + ++ +l +l ea+    +++i +Nt ++   l ++l  k   + +  +Hs +  ++r+     +++e+++  ++v++aT +   ++D+  v ++i    p +    i R+GR  R+grk    +++
  MMETSP1174-20130828|2011_1 181 VFILDEADEMLSRgFLDSVKDMFSSLRD-DVQVCLFSATLPlEVLETTQRFMSDP-LRILVKRDELTLDGIKQFYVAIDREEWKLDTLVDLYEAV-TITQAIIYCNTRRKVEWLTDELTKKD--FTVSCMHSDMEMSERQL----VMAEFRSGSSRVLIATDILARGIDVQqVSLVINYDLPTNreNYIHRIGRSGRFGRKGV-AMNL 378
                 6789999855544155556667777665.8999********88888877777766.678888888777778888888888888888888776665.568999*****999999999998554..45********9999865....5************************824555555566652269***********9966.3333 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.071        26      13      75 ..      56     124 ..      47     132 .. 0.69
   2 !   37.0   0.2     7e-13   2.6e-10     444     543 ..     276     370 ..     248     392 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.071
   TIGR00631  13 DqpkaieklvesleagekeqvLlGvtGsGktftia....nviakv..qkPtlvlahnktLaaqLyeelk 75 
                 ++p+ai++l+     +  + v     G+Gkt+t a    ++i+    +   lvla+ + L  q+ + ++
  MMETSP1174-20130828|2011_1  56 EKPSAIQQLAIVPVGKGLDIVAQAQSGTGKTATFAigalQLIDLGlrECQVLVLAPTRELVLQIHSVFQ 124
                 57899999988777767778888899*****99983333344432113346777777777777776666 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 7e-13
   TIGR00631 444 ervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnv 543
                 +++++   t++  e ltd l++ +  v  +hs+++  er+ ++ ++r g+  vl+  ++L  G+D+ +vslv   D     +  +++  i  iGr+ r  
  MMETSP1174-20130828|2011_1 276 TQAIIYCNTRRKVEWLTDELTKKDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYD-----LPTNRENYIHRIGRSGRFG 370
                 45788899****************************************************************8777.....4556677777777777754 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   3.1   7.5e-11   2.8e-08      20     289 ..      75     350 ..      69     401 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 7.5e-11
   TIGR01970  20 vvLeappGaGkstalP...LalLdapwligrkiilLePrr...laaravaerlaselgeevGetvG.yrvrlenkv.saktrlevvteGiltrmlqdDPeLe..gvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerl...selldeapvveseGrsfP...veirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDs 289
                 +v +a +G Gk++++    L+l+d + l + ++++L P r   l   +v + l++ ++ +v   +G  rvr + +   + +++ + t G +  ++ +  +L+   +++ i+De  e   ++   L   +d  s+lr+D+++ + satL  e l   ++++ +  ++  +        +   y +++++e   d +++  e +    ++  +++     + rr  e+L+++l + + ++  ++ ++e+ +++ +++   +G  +v +at+i    + ++ v +vi+ 
  MMETSP1174-20130828|2011_1  75 IVAQAQSGTGKTATFAigaLQLIDLG-LRECQVLVLAPTRelvLQIHSVFQALSEYMDVSVLACIGgRRVRDDIQAlQQGAQVVIGTPGRVLDLVNERRALDlgSLKVFILDEADEMLSRG--FLDSVKDMFSSLRDDVQVCLFSATLPLEVLettQRFMSDPLRILVKRDELTldgIKQFYVAIDREEWKLDTLVDLYEAVT--ITQA-IIY----CNTRRKVEWLTDELTKKDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINY 350
                 7889********99853348999999.89999******98766678999************9998626899997651566899999***999999887776543899******99965444..577899*******************9877633368999877665555555400155667777766665566555544433..3334.444....467788899*********************************************************965 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   4.7e-05     0.018      23     168 ..      44     189 ..      38     223 .. 0.83
   2 !   18.1   0.0   3.7e-07   0.00014     291     384 ..     284     381 ..     271     389 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.7e-05
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee.rdvra.atydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                 +++ + + ++G e+p + q  a     +G ++v  +   +Gk+ ++ + +l+ +    ++ ++l laPt+ l      + ++l+e  dv + a+  G   ++  + +++ a++v+  P  +        +r a  l++l+  ++de+ +
  MMETSP1174-20130828|2011_1  44 ENLLRGVFSHGFEKPSAIQQLAIVPVGKGLDIVAQAQSGTGKTATFAIGALQLIDLGlRECQVLVLAPTRELVLQIHSVFQALSEyMDVSVlACIGGRRVRDDIQALQQGAQVVIGTPGRVLDL---VNERRALDLGSLKVFILDEADE 189
                 5667777889999999999999999999************************9988757889**********99999999999887666652677888889999999999*****999866432...3456678889999999999865 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.7e-07
   TIGR03817 291 akerlaevdaelaer...vaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv.lvar 384
                 ++++++  + el+++   v++  +     +r+ + +++++G+ + + at+ l  G+d+  +  v+    P  +  +  ++Gr+Gr g++ +++ lv++
  MMETSP1174-20130828|2011_1 284 TRRKVEWLTDELTKKdftVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAMnLVTQ 381
                 555555555555554333666677777789999999****************************************************9988635554 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.039        14     480     606 ..      82     218 ..      73     221 .. 0.59
   2 !   21.7   0.0   3.2e-08   1.2e-05     686     761 ..     301     375 ..     287     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.039
   TIGR00580 480 GfGKTEvamrAafkavldg...kQvavlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkakekkeilkelaeGkidiliGTh.kllq.....kdvkfkdlgLliiDEEqr.....FGVkqKeklKelktsvdvLtlsAT 606
                 G GKT      a++ ++ g    Qv vl+PT  L+ Q ++ +++ ++++ + + +l  +   +  ++ +++l++G  +++iGT  ++l+     +++    l+  i+DE        F  + K+   +l+ +v+v  +sAT
  MMETSP1174-20130828|2011_1  82 GTGKTATFAIGALQLIDLGlreCQVLVLAPTRELVLQIHSVFQA-LSEY-MDVSVLACIGG-RRVRDDIQALQQGA-QVVIGTPgRVLDlvnerRALDLGSLKVFILDEADEmlsrgFLDSVKDMFSSLRDDVQVCLFSAT 218
                 55666544444444444333458***********9998877765.5666.56667766655.45566678888886.7899994366642211123334445566777754311112444556666666666666666665 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 3.2e-08
   TIGR00580 686 riaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkaya 761
                  +  +H+ me +e + vm eF ++++ vL++T i+  Gid+ ++  +i  +  +     ++ + GR GR  +k+ a
  MMETSP1174-20130828|2011_1 301 TVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRI-GRSGRFGRKGVA 375
                 57889*************************************998766544444444444443.555655555555 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0029       1.1       6     217 ..      81     291 ..      77     315 .. 0.60
   2 !   14.6   0.1   5.1e-06    0.0019     288     341 ..     300     349 ..     277     402 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0029
   TIGR00595   6 tGSGKtEvy....lkviekvlakgksvlvLvPEiaLtaqllkrlkerfgsevavlhsklsasekkqawrkvklgeakvviGarSalf........lPlknLgliivDEEHdssyKqeelpryhardvavvrakkenipvvlgSAtPslesyenvkqkkyrllvlkrrvsgaelpevklvdlkkekkqknksllssellealeetlekgeqallFlnrRgyakll 217
                 +G GKt  +    l++i+  l ++ +vlvL P   L  q+ + ++ ++ + + v   +   + + +   ++ ++ a+vviG+   ++        l l  L++ i+DE  +     + +     +d+    + + +++v l SAt  le +e+ ++   + l++  + ++ +l+ +k   +  + + ++k     +l ea+        qa+++ n+R   + l
  MMETSP1174-20130828|2011_1  81 SGTGKTATFaigaLQLIDLGL-RECQVLVLAPTRELVLQIHSVFQ-ALSEYMDVSVLACIGGRRVRDDIQALQQGAQVVIGTPGRVLdlvnerraLDLGSLKVFILDEADEML---SRGFLDSVKDMF--SSLRDDVQVCLFSATLPLEVLETTQRFMSDPLRILVKRDELTLDGIKQFYVAIDRE-EWKLDTLVDLYEAVT-----ITQAIIYCNTRRKVEWL 291
                 688888888544445555444.5789*******99*999998886.5667777777777778888888888888899999997766533333333456678888888876653...333444455553..44455677778888887877777777777766666666666666555544444443.233333333444433.....34666676666655555 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.1e-06
   TIGR00595 288 ariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvls 341
                   ++ + sD+  +++  + ++++f++g  ++li t ++a+G+d ++v+lv  ++
  MMETSP1174-20130828|2011_1 300 FTVSCMHSDMEMSER--QLVMAEFRSGSSRVLIATDILARGIDVQQVSLV--IN 349
                 456677788777666..7899**************************996..44 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0038       1.4      31      71 ..      79     120 ..      60     159 .. 0.80
   2 !   13.7   0.0   1.3e-05    0.0048     285     380 ..     282     366 ..     251     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0038
   TIGR04095  31 matGtGktltaLalvskl.aekikslvvvvvvPykhLveqWa 71 
                    GtGkt t  + + +l +   ++  v+v++P ++Lv q  
  MMETSP1174-20130828|2011_1  79 AQSGTGKTATFAIGALQLiDLGLRECQVLVLAPTRELVLQIH 120
                 457******966666666477789999***********9965 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.3e-05
   TIGR04095 285 cgdgktedekeeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRv 380
                 c          +++r+++ +++ l +  +++v+   +  +++eR+ ++ +f sg+  +l+a   L  G+Dv ++   +     +n  ++i R GR 
  MMETSP1174-20130828|2011_1 282 C----------NTRRKVEWLTDELTK-KDFTVSCMHSDMEMSERQLVMAEFRSGSSRVLIATDILARGIDVQQVSLVINYDLPTNRENYIHRIGRS 366
                 4..........456778888777764.4678888899999**********************************9999999999*****9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.20s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 702.80
//
Query:       MMETSP1174-20130828|2020_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|2023_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 518.85
//
Query:       MMETSP1174-20130828|2025_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1021.18
//
Query:       MMETSP1174-20130828|2030_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.28s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 866.85
//
Query:       MMETSP1174-20130828|2032_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         4  (0.000975134); expected 82.0 (0.02)
Passed bias filter:                        3  (0.000731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 172.16
//
Query:       MMETSP1174-20130828|2033_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.48
# Mc/sec: 1300.64
//
Query:       MMETSP1174-20130828|2037_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|2038_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|2045_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1174-20130828|2042_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 614.04
//
Query:       MMETSP1174-20130828|2052_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1113.86
//
Query:       MMETSP1174-20130828|2054_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1174-20130828|2066_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|2061_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2268.79
//
Query:       MMETSP1174-20130828|2084_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-13   46.1   0.1    9.8e-13   45.2   0.1    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.2e-10   38.9   1.4    3.4e-10   37.4   0.7    1.9  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    8.7e-10   35.8   0.6    3.6e-09   33.7   0.1    2.0  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.9e-07   26.9   0.2     0.0002   18.0   0.1    2.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    6.5e-06   21.9   0.0      4e-05   19.3   0.0    1.8  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    0.00027   17.2   0.1    0.00089   15.5   0.0    1.8  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00029   17.0   0.0      0.032   10.3   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
     0.0015   14.6   0.0     0.0044   13.1   0.0    1.7  2  TIGR00631 uvrb: excinuclease ABC subunit B
  ------ inclusion threshold ------
       0.01   13.5   0.1      0.031   11.9   0.1    1.9  1  TIGR00734 hisAF_rel: hisA/hisF family protein


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   2.1e-15   9.8e-13     203     328 ..     281     418 ..     224     430 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.1e-15
   TIGR01389 203 fsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknle............syyqeaGRaGRDGlkaeailly 328
                 +   k+++k+++l + l   + +  +i+ s  ++  el++ L + ++++l  h+G+++++R e+ ++F   +++++v+t  FG Gid   v  vi +d P++ e            +y   +GRaGR G k  a+ + 
  MMETSP1174-20130828|2084_1 281 YVKLKESEKNRKLNDLLDALEFNQVVIFVSKVARATELNRLLDECNFPSLCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFPREREgeknagessssdQYLHRVGRAGRFGTKGMAVSFI 418
                 3334555666666677776667788***************************************************************************97653333333333336999*********999887665 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.61   2.8e+02       2      25 ..     100     123 ..      99     144 .. 0.79
   2 !   37.4   0.7   7.5e-13   3.4e-10     129     298 ..     209     373 ..     182     433 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.61
   TIGR01587   2 lvieAPtGyGKteaallwalklik 25 
                 +v +A  G GKt + +l  l++i+
  MMETSP1174-20130828|2084_1 100 IVCQAKSGMGKTAVFVLATLHQIE 123
                 6889999*****998888888776 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 7.5e-13
   TIGR01587 129 iiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlke.ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdv 298
                 ++DE + + e   +   +  + ++   + ++++ sAtl+k ++   +k + +  + + d +      +  +   ++ +  e+ + l++ll+a  ++++v+i+v  V rA el   l e +     + +Hs +++++r++k     k++k+++k+++v T +   ++Di+ v++
  MMETSP1174-20130828|2084_1 209 VLDECDRMLEALDMRrDVQEIFRATPHQKQVMMYSATLSKSIRGVCKKFCQDPMEVFIDNDTkL-TLHGLQQYYVKLKESEKNRKLNDLLDA-LEFNQVVIFVSKVARATELNRLLDECNF--PSLCIHSGMKQEERIEK----YKDFKDFKKRILVSTDLFGRGIDIErVNI 373
                 6777776666655554333333444566778999******************999999977732.222222234455555666677777776.5799***************888887554..479**************....69999999***************973455 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19        85      10      48 ..      81     119 ..      76     125 .. 0.87
   2 !   33.7   0.1     8e-12   3.6e-09     164     331 ..     238     419 ..     200     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.19
   TIGR00614  10 esfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                 e+  +vq e i  ++ g d +     G Gk   + l+++
  MMETSP1174-20130828|2084_1  81 EHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATL 119
                 555689************************999988776 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 8e-12
   TIGR00614 164 pviaLtatasssvreDilklLklkkpqvtitsfdR...pnl.kyeveekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksies............YYqesGRaGRDglksecvlfya 331
                  v+  +at s+s+r  + k+ +   ++v+i    +   + l +y+v+ k+s+  ++l+ ++  + + +  +i+    +++ ++   L + +  ++  h+g+++++r e  k+f   + +++v+t  fG Gi+   v  vi y+ p++ e+            Y   +GRaGR g k  +v f a
  MMETSP1174-20130828|2084_1 238 QVMMYSATLSKSIRG-VCKKFCQDPMEVFIDNDTKltlHGLqQYYVKLKESEKNRKLNDLLD-ALEFNQVVIFVSKVARATELNRLLDECNFPSLCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFPREREGeknagessssdqYLHRVGRAGRFGTKGMAVSFIA 419
                 567777777777764.5566666666666644333111444359999999999999999998.777888899999999999****************************************************************9887433333334444499999*****999999988864 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.4e-07    0.0002     261     532 ..     102     376 ..      94     385 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.4e-07
   TIGR00643 261 lqGdVGsGKTvVavlallavie..sGy.qvalmaPTeiLAeQ...hyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve.....fkeLalviiDEQhrF..GveQRkkLrekgkekiaphvLvmsATPIPRtlAltvygdldvsiidelPl..Grkpittklikekek....dkvyevveeeikkgrqvyvvyplieeseklelkaaealleelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvi 532
                  q   G GKT V vla+l+ ie  +G   v+++  T  LA Q    y+++++ l+++++ev    g +  k  +   +++a+   ++vvGT   + + v+     +++L+  + DE  r       R+ ++e            + ATP  + +    ++ l+ s i+ + +   + p+++ + ++++      + y v  +e +k+r+   +  ++e  + +   +  a  +el++ +   ++    +h+ +k++e+ e  ++F++ +  iLv+T +   G+d+ ++++++ 
  MMETSP1174-20130828|2084_1 102 CQAKSGMGKTAVFVLATLHQIEpaDGEiSVLVLCHTRELAYQikgEYDRFSKYLPDIKTEV--FFGGVSVKLNQ---ATLADACPHIVVGTPGRVLDLVKkgfmkLDKLKHFVLDECDRMleALDMRRDVQEI-----------FRATPHQKQVM-MYSATLSKS-IRGVCKkfCQDPMEVFIDNDTKLtlhgLQQYYVKLKESEKNRKLNDLLDALEFNQVVIFVSKVARATELNRLLdeCNFPSLCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVIN 376
                 5677899***********99973345436888999*****994445899999999866655..55666555444...455666689*****987776654221115566666777766652233344444444...........45555555442.234444444.23333211233333333333333444444566667777888888888777777776644444444455555551134445679************************************99998875 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.7e-08     4e-05      14     330 ..      83     380 ..      79     407 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.7e-08
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtsss.erarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgs..kRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGsp 330
                 p + Q+e + +a  g + + +a  G+GKT   +l++l +++        + vl +   + La +i+   ++  + l  +i+ e+  G  s + ++a   ++ p+i++ Tp  +  l+   +    + +l+  v+DE   +l+    R d  e+    +r++  + +v+  sAT+ +  +++ v+ +  ++ +++ ++   + +l+ + l +     +  +     ++l+++l++++ +++ ++F+   ++a      L ++ +e++ +    H+ +++e+R +  + +k+ k r++v+T  +  G+D ++v+ vi+   p
  MMETSP1174-20130828|2084_1  83 PSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQIE---PADGEISVLVLCHTRELAYQIKGEYDRFSKYL-PDIKTEVFFGGVSVKlNQATLADACPHIVVGTPGRVLDLVK--KGFMKLDKLKHFVLDECDRMLEAldMRRDVQEI----FRATPHQKQVMMYSATLSK--SIRGVCKKFCQDPMEVFIDN--DTKLTLHGLQQY---YVKLKESEKNRKLNDLLDALEFNQV-VIFVSKVARATE----LNRLLDECNFPSLCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFP 380
                 5678999999999****************99999***9999...4455799*****************99987766.6899999888877661566677889********99765554..4456699**********9998752223333332....3444555667777999975..56777766666445555555..555555555444...6667778889999******998875.678888888754....45555555555555578899999*99999****************************986555 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.21        95     471     526 ..      98     155 ..      93     227 .. 0.69
   2 !   15.5   0.0     2e-06   0.00089     689     733 ..     331     375 ..     304     433 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.21
   TIGR00580 471 mDRlvcGDvGfGKTEvamrAafkavldg...kQvavlvPTTlLaeQHfetlkeRfknfp 526
                 mD +     G GKT v + A +  ++       v vl  T  La Q  +   +Rf+++ 
  MMETSP1174-20130828|2084_1  98 MDIVCQAKSGMGKTAVFVLATLHQIEPAdgeISVLVLCHTRELAYQI-KGEYDRFSKYL 155
                 7766667889**********999886443357899999999999884.44456666664 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2e-06
   TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                  +H+ m++ee  e  ++F++ +  +Lv+T +   Gidi ++N +i
  MMETSP1174-20130828|2084_1 331 CIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVI 375
                 579***999999999***************************887 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     7e-05     0.032      21     119 ..      67     168 ..      62     222 .. 0.74
   2 !    4.6   0.0    0.0036       1.6     311     385 ..     334     421 ..     311     428 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7e-05
   TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee..rdvraatydGdtp 119
                 ++p++ +a+ + G e+p + q +    a  G ++v  +    Gk+  + l  l +++ +  + ++l l+ t+ la         +++   d++++++ G  +
  MMETSP1174-20130828|2084_1  67 LKPELLRAVVDCGFEHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQIEPAdGEISVLVLCHTRELAYQIKGEYDRFSKylPDIKTEVFFGGVS 168
                 5799***************************************************9976257899*********9876666666665556666666655544 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0036
   TIGR03817 311 aGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfP.........Gtvas...lwqqaGraGrrgqdalvv.lvard 385
                 +G  +e+r e  + +kd + + +++t+ +  G+di  ++ v+   fP         G  +s   +  ++GraGr g + ++v ++a +
  MMETSP1174-20130828|2084_1 334 SGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFPreregeknaGESSSsdqYLHRVGRAGRFGTKGMAVsFIADQ 421
                 78889999999999999999**************************95555433333333333356789*****99999887355544 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.54   2.5e+02      54      85 ..     128     162 ..     100     164 .. 0.61
   2 !   13.1   0.0   9.7e-06    0.0044     445     541 ..     304     407 ..     275     427 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.54
   TIGR00631  54 qkPtlvlahnktLaaqLyee...lkelfPenavey 85 
                 +   lvl+h + La q+  e   + +++P+   e 
  MMETSP1174-20130828|2084_1 128 EISVLVLCHTRELAYQIKGEydrFSKYLPDIKTEV 162
                 445799999999*9999776222555677766665 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 9.7e-06
   TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDa..dke.....GflrsersLiqtiGraar 541
                 +v++ +     a +l   l+e +     +hs ++  er+e  +d+++ +  +lv  +L+  G+D+  v +v   D   ++e     G   s+   +  +Gra r
  MMETSP1174-20130828|2084_1 304 QVVIFVSKVARATELNRLLDECNFPSLCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFprEREgeknaGESSSSDQYLHRVGRAGR 407
                 45555555566889*********************************************************988852233311111333344445566666666 PP

>> TIGR00734  hisAF_rel: hisA/hisF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.9e-05     0.031      80     133 ..     330     383 ..     285     397 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-05
   TIGR00734  80 livdiGvrsredLetlkfvlekddrvvvatetlestellkeilivvsldfkekr 133
                 l +  G++ +e +e+ k   ++++r++v+t+ +      ++++iv+  df  +r
  MMETSP1174-20130828|2084_1 330 LCIHSGMKQEERIEKYKDFKDFKKRILVSTDLFGRGIDIERVNIVINYDFPRER 383
                 77889*****************************9999999********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.66
# Mc/sec: 903.93
//
Query:       MMETSP1174-20130828|2089_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1494.85
//
Query:       MMETSP1174-20130828|2093_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|2102_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1174-20130828|2097_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 1815.47
//
Query:       MMETSP1174-20130828|2106_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|2104_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 441.34
//
Query:       MMETSP1174-20130828|2099_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   31.3   0.0    1.3e-08   31.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.012   12.9   0.0      0.027   11.8   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   6.2e-12   1.3e-08      86     196 ..     189     288 ..     103     298 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6.2e-12
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvae 196
                  q L+ala      ++h DLkP+ni++     +s  kv+DFG + +  + +            ++ s  Y +Pe + g +   + D+++ G i++e  tG++   Ga  +e
  MMETSP1174-20130828|2099_1 189 RQLLEALAFLSTIEIIHCDLKPENILLCD-PRRSALKVIDFGSSCIAGQ-GL---------YSYIQSRFYRSPEVMLGMTHSCAIDMWSLGCILVEMHTGQPLFSGANNQE 288
                 599***********************975.456778******9887533.22.........4589999**************************************98876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.3e-05     0.027      94     135 ..     186     230 ..     166     236 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv...kddklyliDfGL 135
                 ++ +++ e+++ l   +i+h Dl ++Ni++   + + l +iDfG 
  MMETSP1174-20130828|2099_1 186 KFGRQLLEALAFLSTIEIIHCDLKPENILLcdpRRSALKVIDFGS 230
                 566677788899999***************6555788999***95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1230.03
//
Query:       MMETSP1174-20130828|2107_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-57  190.8   0.0      1e-56  190.5   0.0    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.6e-52  176.0   0.0    3.4e-52  175.6   0.0    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.1e-42  144.2   0.0    1.6e-42  143.7   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.9e-34  117.1   0.0    2.4e-34  116.7   0.0    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.7e-05   21.8   0.0    4.1e-05   20.6   0.0    1.6  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    2.1e-05   21.1   0.0      3e-05   20.6   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    6.9e-05   19.3   0.0    0.00022   17.6   0.0    1.7  1  TIGR00763 lon: ATP-dependent protease La
    0.00042   16.8   0.0    0.00059   16.4   0.0    1.1  1  TIGR00764 lon_rel: putative ATP-dependent protease
    0.00051   16.8   0.1     0.0077   12.9   0.0    2.3  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0031   14.3   0.1      0.013   12.3   0.0    1.8  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0037   14.1   0.0      0.005   13.7   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0066   12.5   0.1      0.015   11.3   0.0    1.5  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
      0.016   11.6   0.0      0.026   10.9   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.018   11.9   0.0       0.03   11.2   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
      0.024   12.3   0.1        2.6    5.7   0.0    2.1  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.041   11.2   0.1      0.082   10.2   0.0    1.4  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0     4e-59     1e-56     449     713 ..      14     283 ..       2     290 .. 0.91

  Alignments for each domain:
  == domain 1    score: 190.5 bits;  conditional E-value: 4e-59
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklg..irppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleen....sdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplae...dvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdlkvkkkdflealkkvkps 713
                  v ++ iggle+ kqe+ eav  plk +++f+  g  +  p+gvllfg pgtgkt+laka+a+esga f+ v+   ++ k+ ges+k +  +f  a + +p+iif+de+da   +rg d s  ++ +   +++t  dgl       s+v+v++atnrp  +d a+lr  r+ r   +  p e+ r +i+++  +s p+     d    +lak te y+g+d++ ++r a ++ +re++k+++ e   ++   +     ++  df eal++vkp+
  MMETSP1174-20130828|2107_1  14 SVSFDMIGGLEKEKQEILEAVILPLKRPDLFKGRGslLSAPRGVLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLMNKYFGESNKLVASVFSLAVKMSPCIIFIDELDAFLRQRGGDDSAMLSMK--AEFMTHWDGLLTDtsagSQVIVLGATNRPYDIDSAILR--RMPRTFEIGLPGEQQREHILRLLLKSEPMDSiglDELCAKLAKITERYSGSDLKELCRAALMNPIREALKNTPLESDASSPPPLSSARSLRASDFDEALERVKPT 283
                 58999***************************99966789******************************************************************************999888766..689999**98643222379******************9..9**********************9998864321155556899*********************************9999999999******************96 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   0.0   1.3e-54   3.4e-52     117     349 ..      13     248 ..       3     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 175.6 bits;  conditional E-value: 1.3e-54
   TIGR01242 117 pevsyediGGlekqlreireavelplkkpelfeevG..ieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGf....dprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdl....eelaklteGasGadlkaivteaGmfaireerd 349
                   vs++ iGGlek+ +ei eav lplk+p+lf+  G  +  p+Gvll+G pGtGkt+laka+a+e+ a+f++v  s l++ky Ge  +lv  vf la + +p+iifide+da   +r   +++    ++    ++++  dG+     +  +v v++atnr+  +d a+lr  r+ r  e+ lp ++ r +il++  +   + + + l     +lak+te  sG+dlk ++  a m+ ire  +
  MMETSP1174-20130828|2107_1  13 MSVSFDMIGGLEKEKQEILEAVILPLKRPDLFKGRGslLSAPRGVLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLMNKYFGESNKLVASVFSLAVKMSPCIIFIDELDAFLRQRGGDDSAM-LSMKA---EFMTHWDGLltdtSAGSQVIVLGATNRPYDIDSAILR--RMPRTFEIGLPGEQQREHILRLLLKSEPMDS-IGLdelcAKLAKITERYSGSDLKELCRAALMNPIREALK 248
                 579******************************9996679************************************************************************998885444332.33333...33344444322115667899****************9..9********************9887766654.4441111578*************************9755 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0   6.2e-45   1.6e-42      47     278 ..       9     244 ..       3     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 143.7 bits;  conditional E-value: 6.2e-45
   TIGR01241  47 eeekvkvtfkdvaGideakeelveivdf.LknpkkftklGa..kiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag...lgggndereqtLnqlLvemDGf....etnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla...eevdlkkvarrtpGfsGadlanlvneaallaar 278
                 e ++++v+f+ + G++++k+e++e v   Lk+p+ f+  G+    P+Gvll G+PGtGkt+laka+a e+g +f+++  s +++ + G   + v  +f  a k++PciifiDe+Da  r+rg     + + +         +++  DG+    ++  +vivl atnrp  +D+a+lr  r+ r   + +P  ++re+il++ +k   ++    +   +k+a+ t  +sG+dl+ l+  a +   r
  MMETSP1174-20130828|2107_1   9 EPSQMSVSFDMIGGLEKEKQEILEAVILpLKRPDLFKGRGSllSAPRGVLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLMNKYFGESNKLVASVFSLAVKMSPCIIFIDELDAFLRQRGGDdsaMLSMK-------AEFMTHWDGLltdtSAGSQVIVLGATNRPYDIDSAILR--RMPRTFEIGLPGEQQREHILRLLLKSEPMDsigLDELCAKLAKITERYSGSDLKELCRAALMNPIR 244
                 556899*****************976544***********84468****************************************************************************86422233333.......3455555665111134567*******************..9****************************94322344569****************9866554455 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   9.5e-37   2.4e-34     178     379 ..      14     203 ..       4     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 9.5e-37
   TIGR03689 178 dvtyadiGGldsqieqirdavelPflhkelyreyd..lkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGv....eslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylt 379
                  v+++ iGGl+++ ++i +av lP+++++l++  +  l +P+Gvll+G PG+Gkt++aka+a+           + + fln+    l+nky Ge+++ +  +f+ a     + +P ++f+de+d+++r rG   s+ + + +   +++  dG+     + + viv+Ga+nr   id ailr  r+     i+ P +++ ++il   l+
  MMETSP1174-20130828|2107_1  14 SVSFDMIGGLEKEKQEILEAVILPLKRPDLFKGRGslLSAPRGVLLFGQPGTGKTMLAKAIAKE----------SGASFLNVHLSTLMNKYFGESNKLVASVFSLAV----KMSPCIIFIDELDAFLRQRGGDDSAML-S-MKAEFMTHWDGLltdtSAGSQVIVLGATNRPYDIDSAILR--RMPRTFEIGLPGEQQREHILRLLLK 203
                 69*****************************8764449**********************9863..........3468*************************9765....568*****************7666544.4.457899999996432245689******************9..7788888888888888888765554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.6e-07   4.1e-05      32      93 ..      56     125 ..      49     140 .. 0.79
   2 ?   -2.8   0.0       2.2   5.6e+02     241     265 ..     195     219 ..     166     229 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.6e-07
   TIGR00635  32 hvllyGPPGlGkttlakiiake.....lgvklkitsgpalekpgDlaailtaleeg...dvlfiDeihrl 93 
                  vll+G PG Gkt lak iake     l+v+l +     +  ++ l+a + +l  +    ++fiDe+ ++
  MMETSP1174-20130828|2107_1  56 GVLLFGQPGTGKTMLAKAIAKEsgasfLNVHLSTLMNKYFGESNKLVASVFSLAVKmspCIIFIDELDAF 125
                 58******************995555556667777777777889999988887654222599****9776 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.2
   TIGR00635 241 rklLkaliekfeggPvGletlaaal 265
                  ++L+ l+++   + +Gl+ l+a l
  MMETSP1174-20130828|2107_1 195 EHILRLLLKSEPMDSIGLDELCAKL 219
                 3455555555555555555555554 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07     3e-05     314     394 ..      56     132 ..      22     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.2e-07
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdga 394
                  +ll G PGtGkt +A+++ak  +G +        +v+ + l+ +y ges++    +   a+     ++F+DE+ a + +r g 
  MMETSP1174-20130828|2107_1  56 GVLLFGQPGTGKTMLAKAIAKE-SGAS------FLNVHLSTLMNKYFGESNKLVASVFSLAVKmspCIIFIDELDAFLRQRGGD 132
                 5799*****************8.5655......5579*******************999998633369******9998885554 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.5e-07   0.00022     330     521 ..      22     212 ..      18     237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.5e-07
   TIGR00763 330 glkkvKeRilEylavkklrkkl...kgkil......clvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkk.vktenP.lillDEiDKlgssvrGdPasaLLEvLDpeqNakFlDhYldvpiDl...skVlfvataNsidtiPepLldRmE.vielsgYveeeKleiakkyLipkaleeagl 521
                 gl+k K+ ilE +    +r +l   +g +l       l G PG GKt lak+iAk  +  f+ + l  l            Y G    k++ ++ + + +++P +i++DE+D   ++  Gd  sa+L +      a+F  h+  +  D    s+V+ + ++N+  +i +++l Rm    e+    e+++ +i +  L  + +++ gl
  MMETSP1174-20130828|2107_1  22 GLEKEKQEILEAVILPLKRPDLfkgRGSLLsaprgvLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLMN---------KYFGES-NKLVASVFSlAVKMSPcIIFIDELDAFLRQRGGDD-SAMLSM-----KAEFMTHWDGLLTDTsagSQVIVLGATNRPYDIDSAILRRMPrTFEIGLPGEQQREHILRLLLKSEPMDSIGL 212
                 566677777776665544433211133332111111689**************************999975.........488875.567766654133445527789****9999777775.566654.....4455555544444442227899999999999999999999942445544445666666666666555555555 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.3e-06   0.00059      38      59 ..      55      76 ..      49      89 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.3e-06
   TIGR00764 38 rnvlliGePGvGksmlakamae 59
                r vll G+PG+Gk+mlaka+a 
  MMETSP1174-20130828|2107_1 55 RGVLLFGQPGTGKTMLAKAIAK 76
                89*****************995 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9   7.5e+02     276     299 ..      12      35 ..       8      39 .. 0.82
   2 !   12.9   0.0     3e-05    0.0077      39      63 ..      53      77 ..      50      90 .. 0.89
   3 ?    1.0   0.0      0.13        32     130     149 ..     114     134 ..      97     150 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.9
   TIGR02928 276 ekerllelirglpthsklvLlaia 299
                 +++   ++i gl+++++ +L+a++
  MMETSP1174-20130828|2107_1  12 QMSVSFDMIGGLEKEKQEILEAVI 35 
                 566778999999999999999987 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3e-05
   TIGR02928 39 rpsnvliyGktGtGKtavtkkvlke 63
                 p+ vl++G++GtGKt+ +k++ ke
  MMETSP1174-20130828|2107_1 53 APRGVLLFGQPGTGKTMLAKAIAKE 77
                6999****************99887 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.13
   TIGR02928 130 sliivLDEiDklv.kkeadel 149
                   ii +DE+D ++ ++ +d+ 
  MMETSP1174-20130828|2107_1 114 PCIIFIDELDAFLrQRGGDDS 134
                 568999******965555554 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.1e-05     0.013      46      84 ..      53      91 ..      49     114 .. 0.80
   2 ?   -0.3   0.0      0.34        86     249     262 ..     115     128 ..      96     140 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.1e-05
   TIGR00390 46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkft 84
                 P+ +l+ G  G Gkt +a+ +ak ++a f+ v  +   
  MMETSP1174-20130828|2107_1 53 APRGVLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLM 91
                5999****************************9877654 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.34
   TIGR00390 249 Giifideidkiakk 262
                  iifide+d   ++
  MMETSP1174-20130828|2107_1 115 CIIFIDELDAFLRQ 128
                 69*******87654 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     2e-05     0.005     120     197 ..      57     128 ..      20     136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-05
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                 +ll G  G+Gkt+la+++ake    f     +tl +  y Ge       kl+ +      k    ii+ide+d   r+
  MMETSP1174-20130828|2107_1  57 VLLFGQPGTGKTMLAKAIAKESGASFLNVHLSTLMN-KYFGESN-----KLVASVFSLAVKMSPCIIFIDELDAFLRQ 128
                 899***********************9999999986.699*973.....4554444444577889********87765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0     6e-05     0.015     485     527 ..      53      94 ..      47     104 .. 0.90
   2 ?   -0.5   0.0      0.22        55     257     295 ..      93     131 ..      91     204 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6e-05
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekh 527
                  P g++lf G  G Gkt lak++a+e g ++l   +s  m+k+
  MMETSP1174-20130828|2107_1  53 APRGVLLF-GQPGTGKTMLAKAIAKESGASFLNVHLSTLMNKY 94 
                 58888888.788*************************999985 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.22
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagat 295
                 ky G+ ++ + +v +   k +  i+fiDe+ + +    +
  MMETSP1174-20130828|2107_1  93 KYFGESNKLVASVFSLAVKMSPCIIFIDELDAFLRQRGG 131
                 788888888888888888999999999999877655444 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001     0.026     214     231 ..      57      74 ..      51      89 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
   TIGR00368 214 llllGPPGsGktllakrl 231
                 +ll+G PG+Gkt+lak +
  MMETSP1174-20130828|2107_1  57 VLLFGQPGTGKTMLAKAI 74 
                 89*************987 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.03      46     122 ..      58     132 ..      18     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevik...kalGGvlfide..ayslarGGe 122
                 ++ G PGtGkt +a+ +ak        s   +++v  + l+ +y G++ + +  v     k +  ++fide  a+   rGG+
  MMETSP1174-20130828|2107_1  58 LLFGQPGTGKTMLAKAIAKE-------SGASFLNVHLSTLMNKYFGESNKLVASVFSlavKMSPCIIFIDEldAFLRQRGGD 132
                 5669************9983.......4567888999999999999988877776541115567899999844566677887 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01       2.6      17      42 ..      59      84 ..      53      89 .. 0.84
   2 ?    4.8   0.0     0.019       4.9      79     125 ..      95     143 ..      82     178 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.01
   TIGR02237 17 iyGpggsGKtnialilaveaaekgkk 42
                ++G++g+GKt +a  +a e+ +++ +
  MMETSP1174-20130828|2107_1 59 LFGQPGTGKTMLAKAIAKESGASFLN 84
                7***********99999888777665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.019
   TIGR02237  79 ldeqekaiqkaskliekekadlvvvDsltalyRleksddr..islklel 125
                 + e +k +  +++l+ k +  ++ +D l a+ R + +dd+   s+k+e+
  MMETSP1174-20130828|2107_1  95 FGESNKLVASVFSLAVKMSPCIIFIDELDAFLRQRGGDDSamLSMKAEF 143
                 778899999999999999999******************9443444444 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00032     0.082      16      46 ..      49      79 ..      42      94 .. 0.86
   2 ?   -3.8   0.0       6.2   1.6e+03     218     246 ..     227     255 ..     218     258 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00032
   TIGR02640 16 rylksgypvhlrGPaGtGktslalhvakkrd 46
                + l++ + v l G  GtGkt la ++ak+ +
  MMETSP1174-20130828|2107_1 49 SLLSAPRGVLLFGQPGTGKTMLAKAIAKESG 79
                56889999*******************9876 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 6.2
   TIGR02640 218 egdektsglraslmiakvataedidvdvd 246
                 +g + +   ra+lm     + ++ ++++d
  MMETSP1174-20130828|2107_1 227 SGSDLKELCRAALMNPIREALKNTPLESD 255
                 55566666788888777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        69  (0.0168211); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.70
# Mc/sec: 552.47
//
Query:       MMETSP1174-20130828|2109_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.24s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|2112_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1174-20130828|2113_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 232.92
//
Query:       MMETSP1174-20130828|2119_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 208.98
//
Query:       MMETSP1174-20130828|2118_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 771.63
//
Query:       MMETSP1174-20130828|2120_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.23s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 242.57
//
Query:       MMETSP1174-20130828|2121_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 749.36
//
Query:       MMETSP1174-20130828|2125_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   12.8  19.5     0.0048   13.7   4.4    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
  ------ inclusion threshold ------
      0.017   10.6  22.3      0.028    9.9  15.4    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.39    8.9  20.0       0.43    8.8   1.4    3.3  3  TIGR02559 HrpB7: type III secretion protein HrpB7
          1    6.5  12.7       0.51    7.5   4.0    2.2  2  TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
        3.5    4.3  13.0        2.5    4.8   3.9    2.1  2  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   4.0    0.0035       2.9     122     188 ..      16      85 ..       2     133 .. 0.59
   2 !   13.7   4.4   5.9e-06    0.0048      79     169 ..     138     226 ..     126     231 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0035
   TIGR01843 122 avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqle...liseelealrkLke 188
                 ++ ++++++ ++ es++++ + +le  e++++q e +++++q++l + ++ l+    +s + + ++ L +
  MMETSP1174-20130828|2125_1  16 QDMKIWARELKQTESELKECEFELEDCERELAQTELKRAQYQSALLQCQDVLQsivTLSGQEQCRNALIQ 85 
                 6667777777777777777777777777777777777777776654444433300044555555555544 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.9e-06
   TIGR01843  79 veadaaelesqvlaleaevarlraeanseeaiefpdillsae.davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqal 169
                 +++++a+l s+++a +++ arl+ae+ ++++  f  il++ e +++ ++++++ ++ es++++ + +le  e++++q e +l+++q++l ++
  MMETSP1174-20130828|2125_1 138 AKSEYARLDSSLAAEKLKSARLEAELVEQNSK-F--ILTRTEhAQDMKIWARELKQTESELKECEFELEDCERELAQTELRLAQYQSALLRY 226
                 689**********************8888743.2..4566553499****************************************998665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  15.4   3.4e-05     0.028     731     940 ..      16     222 ..       3     231 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.4e-05
   TIGR02169 731 eeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleee 940
                 ++ +  +++l++ e++l+e+e ele+ ++el++ e + ++++ +l + ++ l+++     +e+ ++   + ++l +    ++++      +l++ ++e  ++e   +e++++  ++e+qk +  ++ e  + +    +e+l+ ++ + +eL e+ ++    r e+ ++++   ++ ++ e+e+++ + +l++ + +l++ e +l++++++
  MMETSP1174-20130828|2125_1  16 QDMKIWARELKQTESELKECEFELEDCERELAQTELKRAQYQSALLQCQDVLQSIVTLSGQEQCRNALIQCRDLLQSTVMLSEQEPL--VNLQSGTMESSIEEAGNDEKNAYLLAIEKQKLAKLAKSEYARLDSSLAAEKLKSARLE-AELVEQNSKFILTRTEHAQDMKIWARELKQTESELKECEFELEDCERELAQTELRLAQYQSA 222
                 455556788999999999999999999999999999999999999999999999999999999999999999888877777765444..4577777788899999999999999999999999999888888777666777666654.67777777777888888888888888888888888888888888888888888777777764 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.3    0.0019       1.5       6      53 ..      21      68 ..      13     100 .. 0.64
   2 ?    2.8   1.0     0.035        29      93     123 ..     132     163 ..     120     182 .. 0.75
   3 ?    8.8   1.4   0.00052      0.43      14      58 ..     185     222 ..     165     229 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0019
   TIGR02559  6 frtllerktrrderlraeleelraaleeadaelaekesqaeakedrld 53
                +++ l++   + +  + ele++ ++l++ + ++a+ +s++ +++d l+
  MMETSP1174-20130828|2125_1 21 WARELKQTESELKECEFELEDCERELAQTELKRAQYQSALLQCQDVLQ 68
                555555555555555556666666666666666666666666665543 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.035
   TIGR02559  93 qavaa.lraalqakedalaakkrkiaRldaqi 123
                 q++a+ ++ + +++   laa+k+k aRl+a +
  MMETSP1174-20130828|2125_1 132 QKLAKlAKSEYARLDSSLAAEKLKSARLEAEL 163
                 55565246788889999999999999999986 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00052
   TIGR02559  14 trrderlraeleelraaleeadaelaekesqaeakedrldrhaar 58 
                 +r       el++   +l+e++ el+++e ++ + e rl++++ +
  MMETSP1174-20130828|2125_1 185 AR-------ELKQTESELKECEFELEDCERELAQTELRLAQYQSA 222
                 34.......455555555555555555555555555555555443 PP

>> TIGR02971  heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4     0.012       9.5     160     193 ..      23      56 ..       5      99 .. 0.61
   2 ?    7.5   4.0   0.00062      0.51      42     122 ..     132     211 ..     123     226 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.012
   TIGR02971 160 eqleeekaalasiaeevreldvklvqaevksake 193
                  +l++++ +l++ + e ++ + +l+q+e+k a+ 
  MMETSP1174-20130828|2125_1  23 RELKQTESELKECEFELEDCERELAQTELKRAQY 56 
                 4444455555555555555555555555553322 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00062
   TIGR02971  42 qvlaeldsrpertaelevAktqldeAkarlaqrragakkievaasrlaraaakkvkdvaaqqaklnrleaeletaqreler 122
                 q la+l++ + ++ + ++A+++l+ A+ ++  +  + +k  + + + a++ +   ++++ ++++l+  e ele  +rel++
  MMETSP1174-20130828|2125_1 132 QKLAKLAKSEYARLDSSLAAEKLKSARLEAELVE-QNSKFILTRTEHAQDMKIWARELKQTESELKECEFELEDCERELAQ 211
                 78999999999*************9988755555.5566666666666777777778888888888888888777777765 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5    0.0042       3.4      58     105 ..      16      52 ..       2     108 .. 0.52
   2 ?    4.8   3.9     0.003       2.5      21     107 ..     131     217 ..     110     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0042
   TIGR00414  58 keigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllk 105
                 ++++              +elk++++el+e e el++ e+el +  lk
  MMETSP1174-20130828|2125_1  16 QDMKI-----------WARELKQTESELKECEFELEDCERELAQTELK 52 
                 22222...........23344444444444444444444443333332 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.003
   TIGR00414  21 rglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkip 107
                 +++ +++   ++  ld++l +++ k  +l+++  e+++++   ++e+++ ++   +elk++++el+e e el++ e+el +  l+++
  MMETSP1174-20130828|2125_1 131 KQKLAKLAKSEYARLDSSLAAEKLKSARLEAELVEQNSKFILTRTEHAQDMKIWARELKQTESELKECEFELEDCERELAQTELRLA 217
                 33336667778888999999999999999988776666666655555555677899**********************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.81
# Mc/sec: 453.00
//
Query:       MMETSP1174-20130828|2128_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 431.96
//
Query:       MMETSP1174-20130828|2124_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.49
# Mc/sec: 1546.16
//
Query:       MMETSP1174-20130828|2127_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-82  273.4  15.4    1.1e-81  272.9  10.7    1.2  1  TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter
    5.5e-24   83.2  33.4    1.3e-15   55.7   9.5    3.2  2  TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein


Domain annotation for each model (and alignments):
>> TIGR01013  2a58: sodium-dependent inorganic phosphate (Pi) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.9  10.7   5.3e-85   1.1e-81       3     403 ..      77     495 ..      75     536 .. 0.89

  Alignments for each domain:
  == domain 1    score: 272.9 bits;  conditional E-value: 5.3e-85
   TIGR01013   3 llfvfvcsldvlsaafillGakvagallaeilildnplaslvigilvtvllqssststsivvgmvsaglllvllaiplivganigtsvtnaivalmqagdreefrrafigatvadifnsllvlvlLplelatgglekvtllvvlvlgansGeeapellkvltdpltklivqldkliiklia........................sllilslikilaktltsLslpeakltieaHifvn...........vgliLlalslvvllarlilivklleslldgqvapvikdvinldtPvlflavtgylallvGaamtfivqsssvftsaltplvgkgvisLerayplvLgsnigttltailaalaseeeklksalqialchvlfnisgivlvyplpitr.lpialakklgedtskerwflvvylvllflliplllfglsl 403
                 ll++f+  ld++ + f +lG+  ag+++     l+np+a+l++gil+tv +qssststsivv+ v++g ++v+ aip+i+ganigtsvtn+iv++++  ++e++ raf+gatv+d+fn l+v+vlLp+e+ +g+l ++t ++ ++  +  G++    lk++  pl    + ++k ++k+i+                         l+  s i  +a+  +s +   ++    + +f++            g +L+ +s + l+a+++ +v+ll+ + ++   +++k          +    g la+lvG ++t +vqsssv ts ltplv  ++i+Le+++pl++g+nigtt ta+la + s       ++qialch lfni gi+ +yp+p+ r +p+++a+ lg  t++ + f + y++ +fl ipl+lfg+s 
  MMETSP1174-20130828|2127_1  77 LLYFFLFFLDLMGTSFKVLGSCEAGEMF---DGLENPIAGLMVGILATVCIQSSSTSTSIVVSLVGSGNMEVKTAIPVIMGANIGTSVTNTIVSMFYIAQEEHLERAFAGATVHDCFNILSVMVLLPIEIIAGVLRHITEAL-KPDDVDDGDKWEGPLKKIVSPLVSQLIIANKDVMKSISkgettcdavydthgnvddgvtyvkGLIKASCISTYANDVGSRCDDVGDRY-TEPLFYDhdasldedmaaAGVCLV-ISVIGLCACMVFLVRLLNYVTKTSTPAMLK---------KAAYMPGVLAMLVGTGLTILVQSSSVTTSVLTPLVAADIITLEQMLPLTMGANIGTTCTALLASMVSS---SADSVQIALCHLLFNIFGILIWYPIPFMRkIPMRAATFLGTCTKELKIFPIIYTLIVFLFIPLILFGISS 495
                 89**************************...679**********************************************************************************************************98.57799****************998888888*******999888888888888888888777777778888888888887777766543.245666666666788996777766.6999***********999887774444444.........244455889********************************************************998...789**************************99************************************974 PP

>> TIGR00704  NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   5.3     2e-12     4e-09      13     102 ..      80     168 ..      65     177 .. 0.81
   2 !   55.7   9.5   6.4e-19   1.3e-15     140     293 ..     334     488 ..     318     496 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 2e-12
   TIGR00704  13 lllfGmkllrkGvikvageklekvLslstekkllafligiavtaivqsssattvlvisfvaagvlslkraivviLGanvGttltaeival 102
                 ++lf ++l+ +   kv g+     +    e+++  +++gi  t  +qsss  t +v+s v  g + +k ai+vi+Gan+Gt++t  iv++
  MMETSP1174-20130828|2127_1  80 FFLFFLDLMGTSF-KVLGSCEAGEMFDGLENPIAGLMVGILATVCIQSSSTSTSIVVSLVGSGNMEVKTAIPVIMGANIGTSVTNTIVSM 168
                 5555555555543.444444444455567899999****************************************************986 PP

  == domain 2    score: 55.7 bits;  conditional E-value: 6.4e-19
   TIGR00704 140 llalellsslvtPltkeelsavvlasvddsvlvdlLiGlvltvilhsssaavaivltlaaeGiiglevalavvlGsnvGstilavlaa.vaaklaarrvalahvlfnvlGalvv..LpflhavlellekLspkdkaekvayfhvlfnvvralvvlPl 293
                   ++  l++l+  +tk+ + a+          +++L+G  lt+++ sss++++++  l+a+ ii+le+ l + +G+n+G+t +a+la+ v++ + + ++al h+lfn++G l+   +pf+  +    +       ++ +  f +++ ++  ++++Pl
  MMETSP1174-20130828|2127_1 334 CACMVFLVRLLNYVTKTSTPAMLKKAAYMPGVLAMLVGTGLTILVQSSSVTTSVLTPLVAADIITLEQMLPLTMGANIGTTCTALLASmVSSSADSVQIALCHLLFNIFGILIWypIPFMRKIPMRAATFLG-TCTKELKIFPIIYTLIV-FLFIPL 488
                 467888899999999999988877777788899*****************************************************97367888899****************8335688776544443333.26888888888888764.345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.55
# Mc/sec: 1401.48
//
Query:       MMETSP1174-20130828|2133_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|2136_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1174-20130828|2139_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.31s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|2134_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1000.18
//
Query:       MMETSP1174-20130828|2141_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 276.75
//
Query:       MMETSP1174-20130828|2145_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1174-20130828|2143_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 769.94
//
Query:       MMETSP1174-20130828|2146_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.6    2.9   9.2        8.2    2.8   6.4    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   6.4     0.002       8.2     243     287 ..      34      77 ..      17      88 .. 0.43

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.002
   TIGR01651 243 eaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrpf 287
                 + +  +  +++ + +  + ++dd++dedd+ a + g+a +p +p 
  MMETSP1174-20130828|2146_1  34 DDDGVDYRSQDLHDDDDDDEEDDEDDEDDH-APSGGDAPKPPKPG 77 
                 222222222222222222222222222222.22356666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 371.22
//
Query:       MMETSP1174-20130828|2148_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|2151_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 677.94
//
Query:       MMETSP1174-20130828|2158_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 145.88
//
Query:       MMETSP1174-20130828|2154_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-07   28.1   4.0    7.3e-07   27.3   2.8    1.3  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
        4.3    2.6  12.3        5.4    2.3   8.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   2.8   3.5e-10   7.3e-07       5     105 .]      13     111 ..      12     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.5e-10
   TIGR03685   5 yaaLllheagkeineenlkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                 yaa+ l++ g e++ ++++++++a+G ev ea   +l +++ + ++ e+i +         ++   aa+a  +++ e++eee+e+eeeee ++ g  ++FG
  MMETSP1174-20130828|2154_1  13 YAAMALYDGGAEVSADQINTLIKATGNEV-EAYWPTLYSGFLKGQVAEIITTPGSGGGGGGGGEGGAAAAGGDAA-EAKEEEKEEEEEEEIDMGGGMDMFG 111
                 9***************************9.588999***99999*******999888776666655555555544.4456677777778888888888887 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   8.5    0.0026       5.4     967     997 ..      70     100 ..      58     105 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0026
   TIGR00927 967 geggsdGGdseeeeeeeeeeeeeeeeeeeee 997
                 g+gg++GG +    +  e +eee+eeeeeee
  MMETSP1174-20130828|2154_1  70 GGGGGEGGAAAAGGDAAEAKEEEKEEEEEEE 100
                 4444444444444433333222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|2161_1  [L=987]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-183  609.9   5.6   1.8e-183  609.5   3.9    1.1  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    2.7e-82  274.8   8.3    8.2e-82  273.2   5.7    1.6  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    4.8e-76  254.0   7.1    2.9e-75  251.4   4.9    2.1  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    1.4e-70  235.9  14.6    1.4e-25   87.5   0.4    4.4  4  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    5.7e-63  211.0   8.6    6.8e-30  101.6   0.6    3.2  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.1e-60  203.9   7.8    5.7e-38  128.9   0.2    2.6  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
      2e-52  176.3   7.7    4.4e-51  171.8   5.4    2.6  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.3e-51  172.3  10.6    2.3e-26   89.5   0.3    3.2  3  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    3.1e-49  165.5  13.6      2e-25   86.7   2.3    2.3  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    7.7e-43  144.7  14.1    2.8e-18   63.7   2.0    3.7  3  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    6.9e-41  138.5  15.3    2.1e-17   61.0   2.9    3.3  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      3e-36  122.2  14.9    2.1e-21   73.0   1.8    3.5  3  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    5.6e-22   75.4  10.4    4.6e-11   39.3   0.0    3.0  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.3e-13   47.5   6.3    0.00059   15.5   0.0    5.5  5  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    0.00018   19.0   2.1      0.006   14.0   0.6    2.6  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
    0.00073   17.3   1.4      0.076   10.7   0.3    2.3  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
     0.0025   15.3   0.1      0.026   12.0   0.1    2.1  2  TIGR00338 serB: phosphoserine phosphatase SerB


Domain annotation for each model (and alignments):
>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  609.5   3.9  7.5e-186  1.8e-183       1     753 [.      43     853 ..      43     855 .. 0.89

  Alignments for each domain:
  == domain 1    score: 609.5 bits;  conditional E-value: 7.5e-186
   TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllkFlsflwnPlswvleiAaiiaialenweDfviilallllnatigfieeskAgnaveaLkkslapkakvlR..dgkwqe..leakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslp.........ve....kklgdiaysgsvvkkGEveav.vvatGvntffGkaakLveeaeke.sghlqkilskigavlivlilvlvliellvellkrkeslreslqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkee.ldkedvlllaalasreedkdaidtavlkkladlk....ealekykelefvpfdpvekrteatledeetgkkfkvtkGapqvildl.........vkekkeieeeveekveelAerGlRaLgvava..dekgewe..llgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedklkse...............eleelvekadGFAevfPeHkyeivealqkr..ghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltlrivvflallililkfklpvllvvllallnDgtiltiakDrvkpskkPekWnlkevflvaivlglilvvstllllalald.tsffedk...vllelkkeelqsllylkvsisgqllifvtRt.kgfsfverpgkllliavviaqivatlia 753
                 GLs++e+++ ++++G ne+  ++e  +l  l  +++P+s++l  A+ii+   e+w+Df+ii ++l++n+ +gf+e++kA + v aLk++l +++  +R  +g+wq   l+ +e+v GD+++++ Gd++paD++  +g++++++ aaltGEslp         v+    k + + +  g  v+k   + + v + G +t +G+a ++++++e++ +++++k +  +  ++i+++l+ v+i+++v++ +r+  + + ++  l l++a++P+alp+v+ +t A+Ga+ +++++a+v+ ++a+ +++++++LCsDktGtlt+ +l+ d + i  ++ +++ +v+++a++a+    +d++d+ v  ++a+       +l++ ++ +   f+p  kr  a  +++e+g + k++kG+ + i+++         ++  ++i++e+ ++ +++A++G++++gva     e+g+w+  ++g++p++DPPr+Dt+e i++ ++ g+ev+m+tGDh  ia etar++gl +nil+ ek++  +++++ ++e               e+eel+ +a GFA+v P  k +iv++ +++  g ++gmtGDGvnDaPaLk  +vGiAv+gAt AA+saaDi+lt+ Gl  i +A++esRki+ R++syv+Yr+ +t++ivv+l++l+++++ ++p+l v+llallnD+t+lt+++D++++ k+P k  + ++++++ ++g+++++s++l++++a   +++++     + ++l+++  ++l+yl++s+  ++lif  R  k+ ++ ++p   l+++v++a+i+  +++
  MMETSP1174-20130828|2161_1  43 GLSDNEVNESRRIHGWNEVVIQEEPWYLVLLACFLQPMSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwvQGTWQYtpLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPekfdedgplVQqgdgKAVHKRILGGCLVHKSPGTLLrVETIGDKTVMGQAQSMIANTESNtTSEFEKKILDVTMYIIAFTLLDVAIVMFVQIEIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTADFSRIKCYNgFTPAQVVTFASVACGSSTEDPVDKSVRISYAQNIpepyLTLQQWNVFHVEGFTPEVKRFVAYAKHPEEG-EWKMSKGMLNKIMKTgddggdtwtCEGIDAIADEIRNTDAKFAQNGYKTIGVAAGqkGEDGQWKmqFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNILSNEKIKYIENRSEDAYEsfeekgkdpvlavtpETEELIISAGGFAQVMPVDKLMIVKVYREYrgGNIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVVVLSTLVFVFDKNIPALYVILLALLNDITMLTVSYDNAREMKEPVKPTIFSILILSFTVGVLMALSSILFYVIARYgNDWWNFLifsTEFSLSDDYSSGLMYLQISLGIEVLIFNCREpKDPFYKSMPCVALMVSVLFANILVVILC 853
                 9***********************************************************************************************9977899986236789*****************************************33333333322222223334455677787766555437788**************999762579***********************************************************************************************************999988888***********************9987655543335557889999999******************977.789**********972222222224445667777999999************9765567788862268*******************************************************99887777665555567789999**99999**************************9854489***************************************************************************************************************************************************998654667665411144566667799*******************8356677777**************988887 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.2   5.7   3.4e-84   8.2e-82      32     821 ..      42     853 ..      14     896 .. 0.80

  Alignments for each domain:
  == domain 1    score: 273.2 bits;  conditional E-value: 3.4e-84
   TIGR01524  32 eGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsyltedleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkea.kdkellelenlllmGtnvvsGraqavvlat.GsstffGslakavse..dreqtafdkGvksvskllirfmlvmvpvvllinGlskG.dwleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivle..khldvsGkkservlklaylnssfqtGlknvldravlekvdesiar..stkarfkkvdeipfdferrrlsvvveeaaevrrlickGaveelltvathlreggavvals..esekeelkavteelnrqGlrvvavatkklkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandvllGad...ieelsdee............laa..evekrav......farltplqkerivtllk..keGhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvleegvieGretfgnilkyl..kmtassnfgnvfsvlvasafipflpmlalhlliqnllydvsqlalpfdkvdkeflkkprkweakdlgrfllfiG...pvssi..fdiatfllmwyvfaantvee..qalfqsGw.fvvGllsqtlvvhmirtekipfiqsraalpvllatllvmavGiiip 821
                  Gl+ +ev e ++ +G nev+ ++  p+++ ll +f +p+ ++l+  + +s  +e+    +ii +m+ + +ll+f+++++a+ +  alk+ + n +  +r +++     +  +   e+v Gd+i++  Gd ipad    +   + i+ +altGeslp ek++++    ++ +   +++ +l G  v    +  + + t G +t +G+    +++  +++ + f+k +  v++ +i f l+ v +v+++    +G  +++     l++ +   p  lpm++  + a Ga ++s +  +v ++ a+q++ am +lc+dktGtlt  +++    +     G +  +v+++a +     + + + +d++v     ++i +   t  +++      f  e +r+    ++ +e +  ++kG ++++++   +   gg+  + +  ++  +e++++ +++ ++G + + va  +  ++++      + ++  +G++ + dpp++ t++ i +l++ngi+v+++tGd + ++    +++G++ n +l   +   ie+ s+++            la   e e   +      fa++ p++k  iv++ +  + G ++G+ GdG+ndapal++++vGi+v +a+  a+ a+diil +  lm +  +v+e r++++ +  y+  ++ a+   + v+s lv   f+    + al++++  ll d++ l++ +d+  +  +k p k     ++ + + +G    +ssi  + ia +   w+ f   ++e      + sG  +++  l   +++   r  k pf +s  ++ +++  l   ++ +i+ 
  MMETSP1174-20130828|2161_1  42 CGLSDNEVNESRRIHGWNEVVIQE-EPWYLVLLACFLQPMSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRWVQGTW--QYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLP-EKFDEDGPLvQQGDGKAVHKRILGGCLVHKSPGTLLRVETiGDKTVMGQAQSMIANteSNTTSEFEKKILDVTMYIIAFTLLDVAIVMFVQIEIRGyGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTADfsRIKCYNGFTPAQVVTFASVACG--SSTEDPVDKSVRISYAQNIPEpyLTLQQWNVFHVEGFTPEVKRFVAYAKHPEEGEWKMSKGMLNKIMKTGDD---GGDTWTCEgiDAIADEIRNTDAKFAQNGYKTIGVAAGQK-GEDG------QWKMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDN-ILSNEKikyIENRSEDAyesfeekgkdpvLAVtpETEE--LiisaggFAQVMPVDKLMIVKVYReyRGGNIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVlyRIGATIQIVVVLSTLV---FVFDKNIPALYVILLALLNDITMLTVSYDNARE--MKEPVKPTIFSILILSFTVGvlmALSSIlfYVIARYGNDWWNFLIFSTEFslSDDYSSGLmYLQISLGIEVLIFNCREPKDPFYKSMPCVALMVSVLFANILVVILC 853
                 699*****************9875.689999*********************************************************************655443..344556679****************************************.999999764267777888888999999988888877665549******9988776522677788*************************99888874477778889*************************************************************9854215556789999999999987665..556788999997776666654124678999999999*******999999999999999********997654...3443333222678899999999999*****999997543.3333......46899*************************************************965.55554412256777665111111111222322112333..23466669*************9985578******************************************************************8446777888888888887...4444444466777779*************9754..666666666665554444441116677743457778889*999876665411456889962556668888888999*************999999988776666654 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   4.9   1.2e-77   2.9e-75      23     693 ..      43     733 ..      24     782 .. 0.81

  Alignments for each domain:
  == domain 1    score: 251.4 bits;  conditional E-value: 1.2e-77
   TIGR01522  23 GlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgniddavsitlailivvtvgfvqeyrsekslealnklvpaechlir..aGkeeh..vlasklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkksse.aiealaersni...aymGtlvreGkgkGivvgt.GsntefGavfemmqeiekpktp.lqksmdklGkdlslvsfivigvivlvGl.lqGkdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvdklaalslktvavekilkvgalcnnakvkneaasllgkptdvaliellekfgledlretvkrvaevpfsserkymavkvltdskkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskte.....kdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGla..vksskeGekldelddqql..................sevvdkvavfaraspehklkivkalq..krGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmd 693
                 Gl s +ev++ r +hG+ne+ ++e e+ +   l  f  +p+ l+l+ + ++s   +++ d   it  +++   +gf ++ +++ s++al+  + ++++ ir  +G  +   +  +++v Gd+++++ Gd +pad+       ++i+ ++ltGe+ p k + + ++ +  + +++      G lv++  g+ + v t G++t +G+  +m+ ++e+  t  ++k + ++   +  +++  ++++++v + ++G  + + +t  +sl +a++p  lp+++ +t alG   ms ++a+v ++ +++ + ++ v+csdktGtlt+ ++t       d     +++  + +++++ +++   ++ ++     ++k++ ++  + + +  l   + +v +v+ ++ +  ++++a +   ++ +  + kG  +++++  +   +    t +  ++  ++i++++a+ a++G + +++a +++      ++ faG++ ++dppr d  e +++l + G++v mitGd ++ a++ ar++Gl+  + s+++ + +++ ++++                   +e++  +  fa+  p +kl ivk ++  + G+++ mtGdGvndapalk++++G+a+ +  t  a+ aad+iltdd +  i +a+ e + i+  ++ ++ +++ +++  + +++ + v+ ++  + a+ ++ + +l d
  MMETSP1174-20130828|2161_1  43 GL-SDNEVNESRRIHGWNEVVIQE-EPWYLVLLACF-LQPMSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwvQGTWQYtpLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPEKFDEDgPLVQQGDGKAVhkrILGGCLVHKSPGTLLRVETiGDKTVMGQAQSMIANTESNTTSeFEKKILDVTMYIIAFTLLDVAIVMFVQIeIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTA------DFSRIKCYNGFTPAQVVTFASVACGSSTEDP----VDKSVRISYAQNIPEPYLTLQQWNVFHVEGFTPEV-KRFVAYAKHPEEGEWKMSKGMLNKIMKTGDDGGDT--WTCEGIDAIADEIRNTDAKFAQNGYKTIGVAAGQKgedgqWKMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPdnILSNEKIKYIENRSEDAYesfeekgkdpvlavtpetEELIISAGGFAQVMPVDKLMIVKVYReyRGGNIIGMTGDGVNDAPALKASNVGIAV-KGATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVVVLS-TLVFVFDKNIPALYVILLALLND 733
                 45.599**************9876.56777789999.68999999999*****************************************75555667788833454444114579*****************************************98765425555555554422145699*********9887769**************999877525566656665555566667899999987699*********************************************************************998864......5555566777777888999988888877766....89999999888888878877777777776655443.457788888889999999********998765444..68888899***********************988522222579*************************************************97445666666666666555431111111111111111113445556679***************943569************************8.78899*****************************************9997654433.34788999999998888887776 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   7.4e-15   1.8e-12       2      92 ..     103     197 ..     102     229 .. 0.84
   2 !   57.8   4.5   5.8e-19   1.4e-16     109     229 ..     242     365 ..     222     387 .. 0.79
   3 !   48.0   0.0   5.6e-16   1.4e-13     301     379 ..     486     573 ..     453     579 .. 0.76
   4 !   87.5   0.4   5.7e-28   1.4e-25     362     465 ..     604     714 ..     596     728 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 7.4e-15
   TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtv.lregeke..isskdlvvGDivlvkkgekvpaDgvllsgs.aevdessLtGEsnpve 92 
                 i+++++++ ll ++++ ka++++r+lk+k +n   ++  ++++++    + +++vvGDi+ v+ g+++paD+ + sgs +e+++++LtGEs p +
  MMETSP1174-20130828|2161_1 103 ITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwVQGTWQYtpLNPREIVVGDIIHVRGGDAIPADCSFHSGStVEINTAALTGESLPEK 197
                 8899************************988876555505555543225789************************96379**********9975 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 5.8e-19
   TIGR01494 109 klkvskiavvvktgsektplqrkldklaliflla.llllallvfllvlielktflkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmel 229
                  ++++ +++ +++   +   ++k+  ++++++ + ll +a+++f+ + i++++f+  i+++l+l+++++P+aLp++++i++a+g+ +++   ++v++  al+++  ++v++sDKTGTLT+ +++ 
  MMETSP1174-20130828|2161_1 242 MGQAQSMIANTESNTTSEF-EKKILDVTMYIIAFtLLDVAIVMFVQIEIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSehhAVVTNFAALQDISAMTVLCSDKTGTLTTANLTA 365
                 4444445444444444333.4555455555555505557888888888999********************************9998854449***************************99986 PP

  == domain 3    score: 48.0 bits;  conditional E-value: 5.6e-16
   TIGR01494 301 laseglrtlavas.........keellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfarvsPeqKaeive 379
                 +a++g++t++va          k +++G++ + dp+r+d++e+i++l+++gi+v m+TGD+++ A+++a+++gl  +    +K + +e
  MMETSP1174-20130828|2161_1 486 FAQNGYKTIGVAAgqkgedgqwKMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNILSNEKIKYIE 573
                 4555566666554222222222678************************************************988888888877776 PP

  == domain 4    score: 87.5 bits;  conditional E-value: 5.7e-28
   TIGR01494 362 elglfarvsPeqKaeivellkkk..gevvamiGDGvNDapALkaAdVGiais.....AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465
                 + g fa+v P +K+ iv+ +++   g+++ m+GDGvNDapALka++VGia++     A++aadi+l+dd l+ + ++++e+rk+y+r+ +++ly +  ++ ++++l++l++
  MMETSP1174-20130828|2161_1 604 SAGGFAQVMPVDKLMIVKVYREYrgGNIIGMTGDGVNDAPALKASNVGIAVKgataaAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVVVLSTLVF 714
                 55679****************974479***********************96444448999***************************************99999887665 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.6   2.8e-32   6.8e-30      24     282 ..      94     364 ..      76     373 .. 0.82
   2 !   36.7   0.0   1.2e-12   2.9e-10     435     508 ..     484     562 ..     472     584 .. 0.81
   3 !   75.5   0.6   2.2e-24   5.3e-22     525     644 ..     608     727 ..     597     776 .. 0.84

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 2.8e-32
   TIGR01116  24 vaalvePlvillilvlnaivGvwqernaekaiealkeleseealvlr..darka......kdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrt.GvnteiGkirkevkeaeeektP.lkkk.ldefGeklskvialicilvwv.inikkflaiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkms 282
                   ++ +  +i ++l++n+ +G +++ +a  ++ alk+   ++   +r  +++++      +++v+Gdi++++ Gd +pad  + +  +++++ + ltGes + +   +    ++ + ++ +  +  G lv +     + v+t G +t +G+ ++ + ++e ++t  ++kk ld     ++  +  + i+++v i+i+ +     +   ++l +a++P  lP vi    alG+  m++++a+v ++  ++ +   tv+csdktGtltt +++
  MMETSP1174-20130828|2161_1  94 AEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwvQGTWQytplnpREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPEKFDEDGPLVQQGDGKAVHKRILGGCLVHKSPGTLLRVETiGDKTVMGQAQSMIANTESNTTSeFEKKiLDVTMYIIAFTLLDVAIVMFVqIEIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLT 364
                 56788889*****************************9999887766225555444444489**************************************99877777655566666666677899****99887777666559************998877664266662455555666667777777777678888888888888999*********************************************************8765 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 1.2e-12
   TIGR01116 435 kelssealrclalavkees.....klifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilss 508
                  ++++++ +++++a  ++      k+ f+G++ + dPPr++ a+ i++ ++ Gi+v +itGd+k+ a   ar+iG+ + 
  MMETSP1174-20130828|2161_1 484 AKFAQNGYKTIGVAAGQKGedgqwKMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDN 562
                 567888888888876543211222689************************************************8655 PP

  == domain 3    score: 75.5 bits;  conditional E-value: 2.2e-24
   TIGR01116 525 fsrvePshklklvelk...eldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgiealipvqllWvnl 644
                 f++v P +kl +v++    + ++i+ mtGdGvndaPalk +++Gia+   t+ a++a+d++l+dd +  i +av e r iy  +++++ y i + i  +v ++ t ++ +++ ip   l+v l
  MMETSP1174-20130828|2161_1 608 FAQVMPVDKLMIVKVYreyRGGNIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQ-IVVVLSTLVFVFDKNIPA--LYVIL 727
                 88999999999988651115689************************************************************************96.666888999999888775..44444 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.2   2.4e-40   5.7e-38       1     445 [.      80     574 ..      80     583 .. 0.70
   2 !   77.5   1.5   8.8e-25   2.1e-22     424     540 ..     601     726 ..     593     745 .. 0.79

  Alignments for each domain:
  == domain 1    score: 128.9 bits;  conditional E-value: 2.4e-40
   TIGR01525   1 mdlLivlatlaalavslvlegalllvllllgelLeelakskasealselle...lapeealllkeddseeevaveelqvgDivkVkpGekipvDGevieges.evDesllTGEslpve.............kkegdeViaGtvnlegs.leikvtkvgedstlaqivklveeaqes.kakiqrladklasyfvplvlaialltflvwlalga..lkaealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse..seeellalaa.alessseHplakaivkyake........................kslelkkve.......veeveevpgkgvsakvdge......eevrigneklleeleaeee..kvkeeleeeeeqgktvvlvavdd......ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiidevvaellPedKlakvkk 445
                 m l+ + a++++  +++++   ++ ++l++  lL  +   ka++++++l++   +  ++++ ++++ + + ++ +e+ vgDi+ V+ G+ ip+D+   +g++ e+++++lTGEslp +             k++ +++++G +  ++    ++v++ g+ +++ q  +++++ +++  +++++ + +++ y++ + l+  +++++v + +    + ++ ++  ++++++++P aL + + ++++ + ++++++  ++ + +al++++ +++++ DKTGTLT+ +lt   +  +k ++  + +++++ a+ a  ss+e p+ k++     +                        k                ee e  ++kg+ +k+ ++      +  + g + ++ e++  +   + + + +   ++g++       +      +++g+i + D++r++++e+i++L+++giev ++tGD+++ a + A+++g+ d++    l ++K++++++
  MMETSP1174-20130828|2161_1  80 MSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSklvNHVDTIRWVQGTWQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTvEINTAALTGESLPEKfdedgplvqqgdgKAVHKRILGGCLVHKSPgTLLRVETIGDKTVMGQAQSMIANTESNtTSEFEKKILDVTMYIIAFTLLDVAIVMFVQIEIRGygF-WDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTAD-FSRIKCYNgfTPAQVVTFASvACGSSTEDPVDKSVRISYAQnipepyltlqqwnvfhvegftpevK-------RfvayakhPEEGEWKMSKGMLNKIMKTgddggdTWTCEGIDAIADEIRNTDAkfAQNGYKTIGVAAGQKG------EdgqwkmQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNI----LSNEKIKYIEN 574
                 6778889999************999999999988665555555555555550005666666777666*********************************9857***********96633333333333334455678999988554426689***************99887765145566666666666666666555555555544433331.489****************************************************************99975.34444445565677777766266788899******8544443776666666665555544444441.......0444444446666666777777666644444443333333332222222222221122222222222222......13455559**********************9999**********************86665....45566666665 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 8.8e-25
   TIGR01525 424 lgiidevvaellPedKlakvkklqeeegk.kvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynl..vaiplaaggllpla......l 540
                 l i+   +a+++P dKl +vk ++e +g+  + m GDG+NDApAL+a++vGia+  +++ a+ aAD++l++d l  + +a+  srk+ ++++  ++  ++ ++  v+++  ++ +++ +      +
  MMETSP1174-20130828|2161_1 601 LIISAGGFAQVMPVDKLMIVKVYREYRGGnIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIqiVVVLSTLVFVFDKNipalyvI 726
                 55566679****************888887999*************************************************************99877655410333333333333335554444 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   5.4   1.8e-53   4.4e-51      55     706 ..      43     708 ..      32     739 .. 0.69

  Alignments for each domain:
  == domain 1    score: 171.8 bits;  conditional E-value: 1.8e-53
   TIGR01517  55 GvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGvailvsvllvvlvtavnDykkelqfreLnekkee..kkikviRgg.qeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkekLlsGtkvlegsgrmlvtav..G..vnsvtGklltelreageeeplqlkLselasligkfGl.....gsavllllvlvlry.viekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsv....vkgyigeeavrnilveaivlnssaeeekdkgkeefiGsktetalLelvklllkdvkekrkeekvvkiypfeserkkmsvvvkhse.glRlfikGaseivlkkcekkldsngeakeisekkdevedeien....lasealRtislaykdelpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGD..n..lstakaiarecgiltagela.leg.ke.....frkdkilpklrv.............laRssPlDkqlLvelkkl...gevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavil 706
                 G+s++e+++ ++++g ne+  ++e  +l ++++ +   + ++L+ a ++s            +w + + i   +++  l+  ++D k +   r L++k  +   +i+ ++g  q + ++  ++vvGDi++++ Gd +paD+ + sG  ++i+ ++ltGes p k  ++    G  v++g g+ +   +  G  v+   G ll   +  g+++++ +  s +a++ ++        +  v +++++++   v   + ++ e++   + d +  ++ +++ +vP +LP+ + ++ a + + + + ++ v + aa   + + t +CsDktGtLt+  ++     +k y g +  + +  ++++  ss+e+ +dk  +           +++++++ +++  + ++ +v++++ f+ e k+     kh+e g    +kG  + ++k    + + +g+ +  +e  d ++dei+n    +a ++ +ti +a  ++ ++ +     + + +++ + dP r +  e +++ ++ Gi vRm+tGD  n  ++ta+ i    +il+++++  +e  +e     f ++   p l v             +a+  P Dk ++v++ +    g+++ +tGDG nDaPaLk ++vG+a++ a t  a+ a+Diil+dD    i  av+  R +y  ++ ++ + +   +  v++
  MMETSP1174-20130828|2161_1  43 GLSDNEVNESRRIHGWNEVVIQEEPWYL-VLLACFLQPMSLMLIFAMIISGS--------AEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNhvDTIRWVQGTwQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPEKFDED----GPLVQQGDGKAVHKRIlgGclVHKSPGTLLRVET-IGDKTVMGQAQSMIANTESNTTSefekkILDVTMYIIAFTLLdVAIVMFVQIEIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTAdfsrIKCYNGFTPAQVVTFASVACGSSTEDPVDKSVR-----------ISYAQNIPEPYL-TLQQWNVFHVEGFTPEVKRFVAYAKHPEeGEWKMSKGMLNKIMK----T-GDDGGDTWTCEGIDAIADEIRNtdakFAQNGYKTIGVAAGQKGEDGQW---KMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDhkNiaIETARQIGLPDNILSNEKIKyIENrSEdayesFEEKGKDPVLAVtpeteeliisaggFAQVMPVDKLMIVKVYREyrgGNIIGMTGDGVNDAPALKASNVGIAVKGA-TAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVVV 708
                 7777888888888888888766654444.44455555566666677776632........34576655555555555678899************97644301445555554234457779***************************************99876643....4455555554443322111113344444443333.3444444444444444333322200000222333333333331222344677888999******************************************************************9888761111334444444444444444444444444443333...........567777766665.4677899*********9999888888651566666665555544....4.456666778888888888887644448999999999998776665555...599***********************************5534478999988888888876653133212122223665533333333222222222334458899*********975434499************************999.**************************************9887555544443 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   3.2e-18   7.8e-16      27     181 ..      44     201 ..      22     244 .. 0.81
   2 !   31.8   1.7   2.6e-11   6.3e-09     297     371 ..     292     365 ..     246     380 .. 0.76
   3 !   89.5   0.3   9.4e-29   2.3e-26     578     788 ..     506     725 ..     395     785 .. 0.70

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 3.2e-18
   TIGR01523  27 ltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfattdwieggvisavivlnvlvglvqeykaektmdslktlaspnahvirss....kseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdan 181
                 l+++e+ +  +  g n +  + +   + vll   l+ m ++l++a+i+s + ++w +  +i+ ++++n l+g+ ++ ka+ ++ +lk+        ir      +   ++ +++v gd++ ++ gd++pad  +      e + a ltgeslp   d +
  MMETSP1174-20130828|2161_1  44 LSDNEVNESRRIHGWNEVVIQEE-PWYLVLLACFLQPMSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRWVqgtwQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPEKFDED 201
                 55555555555555555444333.23457888999************************************************99998877777777754111145679********************************************876654 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2.6e-11
   TIGR01523 297 fdvdkevaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmla 371
                 +   +e++   +sl ++ +p +l +v+ it a+ga++m++ + +v  + al+ + a+t +csdktgtlt   + a
  MMETSP1174-20130828|2161_1 292 YGFWDEIT-DCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTA 365
                 33444443.4678889999**************************************************988766 PP

  == domain 3    score: 89.5 bits;  conditional E-value: 9.4e-29
   TIGR01523 578 esdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrd.........eivdsmvmtgsqfdalseeevddlkvlplviarcapqtkvkmieal..hrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfr.devgksvfp 788
                 + +++f +++ + dppr +++  ++ +   gi+v m+tgd+ + a   ar++g lp n++s+++         +  +s+   g +       e ++l + +   a+  p  k+ +++    +r  +++ mtgdgvnd+p+lk +nvgia+    +  a+ a+di+l+dd +  i  av e r+++  ++ +vl  +   +  v++ +  lvf  d++  +++ 
  MMETSP1174-20130828|2161_1 506 QWKMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIG-LPDNILSNEKikyienrseDAYESFEEKGKDPVLAVTPETEELIISAGGFAQVMPVDKLMIVKVYreYRGGNIIGMTGDGVNDAPALKASNVGIAVKG-ATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVVV-LSTLVFVfDKNIPALYV 725
                 34689***********************************************9.5776665432100000000222333333333333334455666666666789999999987776522466799**********************854.4567899*********************************998887755554.45566641444444444 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   1.8   5.8e-27   1.4e-24     109     362 ..     102     365 ..      74     372 .. 0.81
   2 !   86.7   2.3   8.3e-28     2e-25     556     802 ..     508     745 ..     504     806 .. 0.77

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 5.8e-27
   TIGR01106 109 vlsavvivtgvfsyyqeaksskilesfknlvpqqalvir..dg..eklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspefthenpletrniaf.fstncvegtargivv...stgdrtvlgriaslasglesgktp.iaiei.ehfidiitgvavflgvsffilslileytfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtv 362
                 +++++++v  ++++++++k+   + ++k  + ++   ir  +g  + + +n  e+vvgd+++v+ggd ipad    s   ++++ ++ltges p+    +    +  + + +       c+   + g ++   ++gd+tv+g+  s+ +  es+ t     +i +  + ii+   + + + +f+   i +y f + +   +++i+a vp  l   + ++ +l a  ++++  +v n+ a++ + + +v+csdktgtlt  ++t 
  MMETSP1174-20130828|2161_1 102 IITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwvQGtwQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTVEINTAALTGESLPEKFDEDGPLVQQGDGKAVHKrILGGCLVHKSPGTLLrveTIGDKTVMGQAQSMIANTESNTTSeFEKKIlDVTMYIIAFTLLDVAIVMFVQIEIRGYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLTA 365
                 45667788889999999999888888887666666666633221145679********************************************97666654444445555532133456666666654311257***********9999999877524444414456677777777889999999999*********************************************************************999885 PP

  == domain 2    score: 86.7 bits;  conditional E-value: 8.3e-28
   TIGR01106 556 nlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiise..gnetvediaarlnipveqvnkrdakacvvhgsdlkdltseqldeilkehteivfartspqqkliivegcq..rqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipei..tpflifiivniplplgtvtilcidlgtdlvpaislayekae 802
                 ++ f+g++ midppr    + +    + gi v m+tgdh   a   a+ +g+  +  +ne ++ i +r + + e  +++  k  v+       +t+e  + i+       fa+  p +kl+iv+  +  r g i+ +tgdgvnd+palk +++g+a+  a   +++ aad+il dd +  i t v e r i+  l+  + y +   i  +     l+f+       + ++ ++++ l  d+   ++++y++a 
  MMETSP1174-20130828|2161_1 508 KMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNilSNEKIKYIENRSEDAYESFEEKG-KDPVLA------VTPETEELIISA---GGFAQVMPVDKLMIVKVYReyRGGNIIGMTGDGVNDAPALKASNVGIAVKGAT-AAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLYRIGATIQIVvvLSTLVFV---FDKNIPALYVILLALLNDIT-MLTVSYDNAR 745
                 578************************************************97654468999999999999999888775.444443......455544444443...46************998653389*************************87554.57889**********************************998777543003445544...34444455556666666653.5666777664 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   2.0   1.2e-20   2.8e-18       3     251 ..      82     364 ..      80     374 .. 0.77
   2 !   29.3   0.0   3.1e-10   7.5e-08     315     383 ..     510     575 ..     496     579 .. 0.91
   3 !   56.1   1.3   2.4e-18   5.9e-16     369     470 ..     609     717 ..     603     775 .. 0.83

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 1.2e-20
   TIGR01512   3 lLmvvaalgavavgellegalllllfslgetLeelaskrakealkaLlelaPdtarrle........eeVaveelkvgdvvvVkkGervPvDGevlsges.sldesalTGEsvpve.........kakg....devlaGainldgvlk.ievtkeaedstiakivklveeaqs.ekaktqrlidrlaekytlvvlliallialvs..........sllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklk 251
                 l+++ a++++   +e+ +  ++ +++ +  +L  +   +ak++++aL+++  +++  ++        +  + +e+ vgd++ V+ G+++P+D+   sg++ +++++alTGEs+p +         +  g    +++l+G +  + + + ++v+ + +++++ +  +++++ +s + +++++ i  +  + + + ll ++++++v+          +    l l++++ P aL + + ++++ + +a + +  ++ + a+l  ++ ++ +  DKTGTLT+ +l+
  MMETSP1174-20130828|2161_1  82 LMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTIRwvqgtwqyTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTvEINTAALTGESLPEKfdedgplvqQGDGkavhKRILGGCLVHKSPGTlLRVETIGDKTVMGQAQSMIANTESnTTSEFEKKILDVTMYIIAFTLLDVAIVMFVQieirgygfwdEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLT 364
                 67789***************************99999999999999999887777655422233322568899***********************997637***********9662222222112233222256788887776665526889999999999999998877651578999998888888777776666666665511111111113445789999999***************************************************9886 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 3.1e-10
   TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelGdevhaellPedKveivkel 383
                 +++g+i + D +r+d+ae+i++L+++g+ ++ ++tGD+++ a + a+++G  +  ++l ++K++++++ 
  MMETSP1174-20130828|2161_1 510 QFAGIIPMIDPPRHDTAEVIHNLNANGI-EVRMITGDHKNIAIETARQIG--LPDNILSNEKIKYIENR 575
                 7899***********************7.66*******************..88899999999998875 PP

  == domain 3    score: 56.1 bits;  conditional E-value: 2.4e-18
   TIGR01512 369 aellPedKveivkelke......vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvv..laltiilvlillallgvlp 470
                 a+++P dK+ ivk  +e      + m GDG+NDapaL+a++vgia+   ++++a  +AD++l++d l  + +a+  +rk+ + ++  v+  ++ ti +v++l +l++v  
  MMETSP1174-20130828|2161_1 609 AQVMPVDKLMIVKVYREyrggniIGMTGDGVNDAPALKASNVGIAVK-GATAAAQSAADIILTDDGLMPIYTAVVESRKIYSRLRSYVLyrIGATIQIVVVLSTLVFVFD 717
                 899*********9887633344368*********************8.778999999***********************999999998334555666666666665544 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   2.9   8.5e-20   2.1e-17      40     278 ..      98     364 ..      77     383 .. 0.76
   2 !   27.9   0.0   9.2e-10   2.2e-07     358     426 ..     509     575 ..     472     580 .. 0.88
   3 !   55.5   0.8     4e-18   9.6e-16     411     501 ..     608     703 ..     595     741 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 8.5e-20
   TIGR01511  40 eafFdelallivllllGrlleelakskaskalekLaklkpeeatllkkdvdv.....eelqvgdilkvkpgekipvDGvvveGes.evdeslltGEslpvk.............kkvgdeviaGtvngeg.sllvkvtkvgedtllaqivklveeAqqs.kakiqrlAdkvas.lfvpvviaiavltfv.......iWllalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGkle 278
                 ++f   +++l+v  llG + +++aks+ ++  +kL++   ++ + ++ +++      +e+ vgdi++v+ g+ ip+D+   +G++ e+++++ltGEslp k             k v +++++G +  +    l++v+++g++t++ q  +++++ +++  ++ ++    v+  + + + + +a++ fv            ++   + +i + P al + i + ++ ++ +++++  ++ +  al++++ +++++ DKTGTLT+ +l+
  MMETSP1174-20130828|2161_1  98 SDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLVNH-VDTIRWVQGTWQYtplnpREIVVGDIIHVRGGDAIPADCSFHSGSTvEINTAALTGESLPEKfdedgplvqqgdgKAVHKRILGGCLVHKSpGTLLRVETIGDKTVMGQAQSMIANTESNtTSEFEKKILDVTMyIIAFTLLDVAIVMFVqieirgyGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLT 364
                 45555567788888889888888888777777777765.45667777665541112278999*********************9768***********9653223333222222334567889999887646789******************99876514566554444444044556677899988743333333557788899999999***************************************************99876 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 9.2e-10
   TIGR01511 358 gelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlaevlPedKaakvkel 426
                  + a+++ + d ++++++evi+ L+++giev ++tGD ++ a ++A+++g+    ++l ++K++++++ 
  MMETSP1174-20130828|2161_1 509 MQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGL--PDNILSNEKIKYIENR 575
                 5667889999****************************************7..8999999999999875 PP

  == domain 3    score: 55.5 bits;  conditional E-value: 4e-18
   TIGR01511 411 laevlPedKaakvkelqe....kkvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYNv 501
                 +a+v+P dK   vk ++e    + + m GDG+NDapaL a++vgia+  +t  a++aad++l++d l+ ++ta+  srk +++++   l+ +g  +
  MMETSP1174-20130828|2161_1 608 FAQVMPVDKLMIVKVYREyrggNIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDDgLMPIYTAVVESRKIYSRLRSYVLYRIGATI 703
                 79***********9998843334688*************************************8769******************99888777554 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   1.8   8.8e-24   2.1e-21     139     464 ..      43     363 ..      21     383 .. 0.78
   2 !   21.9   0.0   2.4e-08   5.7e-06     646     697 ..     508     559 ..     501     597 .. 0.83
   3 !   31.8   2.1   2.5e-11   6.1e-09     773    1019 ..     598     841 ..     578     870 .. 0.64

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 8.8e-24
   TIGR01657 139 GLtkgeiakrkelyGkneieikvksfleLlveevlkPfyvfqvfsvilWlldeyyyyallilvlsvlsivlsvkeirkqlkelrdmvaks.qsveViRek....keetiasdelvpgDivlisrleekllpcDavLlegsci.vnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvf..kfykdslkfilflavlaligfiyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgl 464
                 GL++ e+++ ++++G ne++i+  +   +l+  +l+P+ ++++f++i+ +  e +    +i  ++++   l  +e +k+ +++r +  k   +v  iR      + + ++  e+v gDi+ +    + ++p+D+   +gs + +n + ltGEs p  K+     +   ++ + k++  ++ + gG  v + +p     + l  V   G +t  Gq  +s++  ++ ++  +f+k+ l  ++ ++++ l+ ++ v++  i+++   +   i ++l +i+ +vP aLP+ + ++++ +  ++++++   ++   ++   ++ v+c DKTGTLT  +l
  MMETSP1174-20130828|2161_1  43 GLSDNEVNESRRIHGWNEVVIQEEPWYLVLLACFLQPMSLMLIFAMIISGSAEEWSDFTIITTMLMVNSLLGFFEDMKAKSSVRALKSKLvNHVDTIRWVqgtwQYTPLNPREIVVGDIIHVR--GGDAIPADCSFHSGSTVeINTAALTGESLPE-KFDED--GPLVQQGDGKAV--HKRILGGCLVHK-SP-----GTLLRVETIGDKTVMGQA-QSMIANTESNTtsEFEKKILDVTMYIIAFTLLDVAIVMFVQIEIRgYGFWDEITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANL 363
                 9***********************************************998888888888888888888888899888888888777665466777775445457789***************..9************97654************4.55544..344343344444..444667765533.22.....357888889999999996.56666666555114555555444444455555555555544544446677789*************************************************************9887 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2.4e-08
   TIGR01657 646 nleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgi 697
                  ++f+G++ +  + ++dt+evi++L+   i+v mitGD    a++ ar++g+
  MMETSP1174-20130828|2161_1 508 KMQFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGL 559
                 699***********************************************96 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 2.5e-11
   TIGR01657  773 lkklllkvkVfARvaPeqKeelvetlkkl..dytvlmcGDGaNDcgALkqAdvGisLsea..eAsvaapFtSklasiscVtnvireGRa..aLvtslqvFkylalysliqflsvliLylkgsklgdgQfltidlll.iavvalllsrskplkkLskerpssnllsvylllsvllqfvlvilslvllvfevkkqpwykeeevvelekenakslentvvfivslfqylivaivnskGkpfreplyknkpfvvsllv 1019
                   ++l++    fA v P +K  +v+  +++  + +++m GDG ND  ALk+ +vGi+   a   A+ aa  +     + ++ + + e R   +   s  ++++ a   ++  ls l+  ++  +   +   +i l+l   + +l++s+ ++ +   ke+ +++++s+ +l s  +++++ + s++  v+  + + w +   +   e +    +  +++  ++    + v+i n   ++ ++p+yk +p+v  +++
  MMETSP1174-20130828|2161_1  598 TEELIISAGGFAQVMPVDKLMIVKVYREYrgGNIIGMTGDGVNDAPALKASNVGIAVKGAtaAAQSAADIILTDDGLMPIYTAVVESRKiySRLRSYVLYRIGATIQIVVVLSTLVF-VFDKNIPALY--VILLALlNDITMLTVSYDNARE--MKEPVKPTIFSILIL-SFTVGVLMALSSILFYVIARYGNDWWNFLIF-STEFSLSDDYS-SGLMYLQISLGIEVLIFN--CREPKDPFYKSMPCVALMVS 841 
                  5789999999*****************986689************************765116677888888888899999999999962234456777777776666666665544.4445555555..3333331444556667766655..467788899998765.5555666666666666666666666444433.22222233333.333333333333333333..33335555555555555544 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   2.7   2.8e-13   6.8e-11      65     490 ..     100     564 ..      59     580 .. 0.62
   2 !   39.3   0.0   1.9e-13   4.6e-11     489     551 ..     608     672 ..     591     769 .. 0.86
   3 ?   -3.2   0.0       1.4   3.4e+02      44      82 ..     809     847 ..     807     851 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.8e-13
   TIGR01497  65 fnaivtgilfitvlfanfaeavaeGrgkaqadalkktkketlakllskdgaikkvpadelkkGdvvlveaGdvipadGevieGva.svdesaitGesapv.lkesGgdfas.........vtGGtriv.sdwlvvevtadpGesfldrmialveGaerrktp...nei.altvllvaltl....vfllvvatlyplaayagvkisvsvlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipv...qGadkkkladvavl.asladdtpeGksi.velakklgiredt.kksesaefveftaktr..msGinl..engravrkGavdaikkrveerkG........ripkdldeavekvakqGgtplvvvvdnk.........iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGvddfia 490
                 f +i+t++l++  l+  f +  a+   +a       +++    + ++   + + ++  e+  Gd++ v  Gd ipad    +G++  ++ +a+tGes p  + e G  +           + GG  +  s    ++v +   ++ + +  +++  +e + t     +i  +t+ ++a+tl    + ++v + +  +  + +    ++  ++l++a +p ++  ++      G   + +   + t   a++    + +l  dktGt+t  n   ++f  +   +G    +++  a + +    + p  ks+ +  a+++   + t ++ +  + + ft + +  ++  +   e+  ++ kG ++ i k  ++ +          i+ ++ ++  k a+ G   + v+ ++k           G+i + d  +    e +++l   Gi   m+tGd +  a   a++ G+ d i 
  MMETSP1174-20130828|2161_1 100 F-TIITTMLMVNSLLGFFEDMKAKSSVRALKSK--LVNHVDTIRWVQGTWQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGSTvEINTAALTGESLPEkFDEDGPLVQQgdgkavhkrILGGCLVHkSPGTLLRVETIGDKTVMGQAQSMIANTESNTTSefeKKIlDVTMYIIAFTLldvaIVMFVQIEIRGYGFWDE----ITDCLSLIIASVPVALPMVIQITTALGATAMSEHHAVVTNFAALQDISAMTVLCSDKTGTLTTANLT-ADFSRIkcyNGFTPAQVVTFASVaCGSSTEDPVDKSVrISYAQNIPEPYLTlQQWNVFHVEGFTPEVKrfVAYAKHpeEGEWKMSKGMLNKIMKTGDDGGDtwtcegidAIADEIRNTDAKFAQNGYKTIGVAAGQKgedgqwkmqFAGIIPMIDPPRHDTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNIL 564
                 3.5788899999999888777665555544443..3455555688999999999**************************9997527999*******99524444432222000000111345544432334456666666777777655666555544332110332134444555554111123333444444444444....555556666666666665555555556666667788889999*********************9965.56766522267777777776655145667889999973456666654443314444445556776543113444431133456789999998887765543111111224666666777788999999999987654323333333789**********************************99999999999977664 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.9e-13
   TIGR01497 489 iaeatpedkievik..keqaeGklvamtGdGtndapalaqadvgvamnsGtqaakeaanmvdlds 551
                 +a++ p dk+ ++k  +e   G+++ mtGdG ndapal  ++vg+a+   t aa+ aa+++  d 
  MMETSP1174-20130828|2161_1 608 FAQVMPVDKLMIVKvyREYRGGNIIGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADIILTDD 672
                 58899*****99983355668*************************************9986665 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.4
   TIGR01497  44 vtllvtiapalfgtkgknlrlfnaivtgilfitvlfanf 82 
                 + +++ i++ +f  ++    +++++ ++ l+++vlfan+
  MMETSP1174-20130828|2161_1 809 LQISLGIEVLIFNCREPKDPFYKSMPCVALMVSVLFANI 847
                 67889999999999998889999999***********96 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-06   0.00059      59     144 ..     105     192 ..      76     194 .. 0.69
   2 !    3.8   0.1     0.008       1.9     346     377 ..     333     364 ..     309     380 .. 0.79
   3 ?    2.1   0.0     0.027       6.5     507     582 ..     416     499 ..     385     519 .. 0.83
   4 !   10.9   0.0     6e-05     0.014     635     694 ..     523     585 ..     509     604 .. 0.79
   5 !   12.7   0.3   1.7e-05    0.0041     752     859 ..     611     717 ..     608     740 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.4e-06
   TIGR01652  59 vvllvtaiKeaieDirrrksDkevNnkkvevlee......sakfkeikwkdlkVGdivkvkkdeeiPaDllllssseedGvcyveTknLDGE 144
                  +l+v  +   +eD++ + s +++ +k+v+ +        + +++  + +++ VGdi++v+ +++iPaD+ + s s     + ++T+ L GE
  MMETSP1174-20130828|2161_1 105 TMLMVNSLLGFFEDMKAKSSVRALKSKLVNHVDTirwvqgTWQYTPLNPREIVVGDIIHVRGGDAIPADCSFHSGST----VEINTAALTGE 192
                 55666666677788887766666666655555442222114566667779********************8877664....34677777776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.008
   TIGR01652 346 asvrtsnlneeLGqveyifSDKTGTLTqNkme 377
                 a v ++   +++  +  + SDKTGTLT+ +++
  MMETSP1174-20130828|2161_1 333 AVVTNFAALQDISAMTVLCSDKTGTLTTANLT 364
                 555566666788888999*********87665 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.027
   TIGR01652 507 ekeyeiLnvleFnSsrKRmsvivrlpddellLlcKGADsvifkrlse........esekvlektkehlekyaseGlRTLviarr 582
                  +++++ +v  F+ + KR     + p++  + ++KG  + i+k  ++        + +++ +++++  +k+a++G +T+ +a  
  MMETSP1174-20130828|2161_1 416 LQQWNVFHVEGFTPEVKRFVAYAKHPEEGEWKMSKGMLNKIMKTGDDggdtwtceGIDAIADEIRNTDAKFAQNGYKTIGVAAG 499
                 5799************************99999***9999999999877777766667889999999999********988865 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 6e-05
   TIGR01652 635 egVpetielLaeAgikiWvLTGDk....vETAinigysckLlseemellvikeesldaleavea 694
                 ++  e i+ L+  gi + ++TGD+    +ETA+ ig+  ++ls+e ++  i++ s da e+ e+
  MMETSP1174-20130828|2161_1 523 HDTAEVIHNLNANGIEVRMITGDHkniaIETARQIGLPDNILSNE-KIKYIENRSEDAYESFEE 585
                 577899*****************7444469************987.566677767777665555 PP

  == domain 5    score: 12.7 bits;  conditional E-value: 1.7e-05
   TIGR01652 752 vsPsqKaavvklvkk.slskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigqFrfLekL.lLvHGrwsYkRisklilyffyknlilalilfwyslvnefs 859
                 v P  K  +vk+ ++ +  +++   gdG ND   +++ +vG+ ++G+   +A  a+D+ ++    +     +v  r  Y R+ + +ly +  +++++++ +  +lv+ f+
  MMETSP1174-20130828|2161_1 611 VMPVDKLMIVKVYREyRGGNIIGMTGDGVNDAPALKASNVGIAVKGAT-AAAQSAADIILTDDGLMPIYtAVVESRKIYSRLRSYVLYRI--GATIQIVVVLSTLVFVFD 717
                 89*************8778999999*********************96.6789999*999987777543157788888988887777665..444444444445555554 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.049        12      20      60 ..     524     564 ..     522     593 .. 0.82
   2 !   14.0   0.6   2.5e-05     0.006     209     244 ..     634     669 ..     630     675 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.049
   TIGR00099  20 etkealaklrekGikvvlaTGRsykevkeilkelgldpliv 60 
                  t e++ +l ++Gi+v   TG +++ + e  +++gl   i 
  MMETSP1174-20130828|2161_1 524 DTAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNIL 564
                 5789999****************999999999999884444 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.5e-05
   TIGR00099 209 aiGDseNDieMleaagvgvamgnaneelkaladyvt 244
                 + GD+ ND++ l+a +vg+a++ a+  +  +ad + 
  MMETSP1174-20130828|2161_1 634 MTGDGVNDAPALKASNVGIAVKGATAAAQSAADIIL 669
                 57*****************************99876 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.018       4.3      23      61 ..     525     563 ..     522     577 .. 0.87
   2 !   10.7   0.3   0.00031     0.076     130     202 ..     601     668 ..     568     674 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.018
   TIGR01487  23 aieairklekkGikvvlvtGnevkfvealavligvsgav 61 
                   e i +l+ +Gi+v ++tG  ++++   a  ig+ + +
  MMETSP1174-20130828|2161_1 525 TAEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDNI 563
                 578999********************9999999987765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00031
   TIGR01487 130 levvasgyavhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlv 202
                 l + a g+a      +vdK + vk+  e  G +   + + GD+ nD ++ +  + ++av  A+     +aD++
  MMETSP1174-20130828|2161_1 601 LIISAGGFAQV---MPVDKLMIVKVYREYRGGNI--IGMTGDGVNDAPALKASNVGIAVKGATAAAQSAADII 668
                 55555666543...36999999999999999888..9999*******************************98 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.35        85      91     131 ..     526     567 ..     520     575 .. 0.86
   2 !   12.0   0.1   0.00011     0.026     173     215 ..     634     677 ..     617     681 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.35
   TIGR00338  91 eelvkkLkekgykvaviSGgFdlvaeklkekLglda.vfaNr 131
                  e++++L+ +g++v +i G  + +a + + ++gl+  + +N+
  MMETSP1174-20130828|2161_1 526 AEVIHNLNANGIEVRMITGDHKNIAIETARQIGLPDnILSNE 567
                 699*********************999999999964367775 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00011
   TIGR00338 173 avGDGanDlsmikaAglgiafn.akpvlkekadiviekkdltdi 215
                 + GDG nD +++ka ++gia + a  + +++adi + +  l+ i
  MMETSP1174-20130828|2161_1 634 MTGDGVNDAPALKASNVGIAVKgATAAAQSAADIILTDDGLMPI 677
                 78******************982456678888988888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.76u 0.26s 00:00:02.02 Elapsed: 00:00:01.88
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|2167_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 248.89
//
Query:       MMETSP1174-20130828|2165_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|2178_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 506.84
//
Query:       MMETSP1174-20130828|2177_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.45
# Mc/sec: 1475.34
//
Query:       MMETSP1174-20130828|2188_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 309.89
//
Query:       MMETSP1174-20130828|2198_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1174-20130828|2197_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|2206_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 288.73
//
Query:       MMETSP1174-20130828|2205_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.72    6.7  19.1        0.9    6.4  13.3    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        7.8    1.8  15.1        8.9    1.6  10.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.3   0.00044       0.9       5     105 ..      11     107 ..       6     117 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00044
   TIGR01554   5 reklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea...fraylrrgddalaeeakals 105
                 +++ +++++e +++ ++e+++ +e+e+    a+ka+i+ +eae++r ++aaae + kea + e+++ e+ee+e ++ +aea   f++    ++++ +++++ +s
  MMETSP1174-20130828|2205_1  11 QQQSKKRVTEKQEEVQQETLAHVEAEA----AIKARIKVVEAELARVKTAAAEKAHKEAGEVEKARVEAEEAEIARVEAEAemaFVE---VEEAEKSRTEAEAS 107
                 444555555555555555555555544....4********************************99999999999999998566444...33333333322222 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  10.5    0.0044       8.9     769     866 ..      10     108 ..       4     122 .. 0.47

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0044
   TIGR00927 769 egekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekeded..egeieake 866
                   ++++++ +e+++e ++e+ a+ e e  i+a  k  +++ + +++  ae k ++e++eve+     +e +    e+eae    e+e+ +   +e+ea+e
  MMETSP1174-20130828|2205_1  10 RQQQSKKRVTEKQEEVQQETLAHVEAEAAIKARIKVVEAELARVKTAAAE-KAHKEAGEVEKARVEAEEAEIARVEAEAEMAFVEVEEAEksRTEAEASE 108
                 44555556666677777777777777777777766655555555554433.3334555555544333333333333333322222222110023333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       674  (0.16431); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.55
# Mc/sec: 295.18
//
Query:       MMETSP1174-20130828|2210_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    2.0  14.0        6.8    2.0   9.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   9.7    0.0017       6.8     812     905 ..      12      72 ..       1      77 [] 0.27

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0017
   TIGR00927 812 ieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaee.dgevk 905
                 +e   aevk   e+e                                   + a+e+v ve+++  +e ++  eae   +e++G +ea+   +e k
  MMETSP1174-20130828|2210_1  12 AERAAAEVKTRVEAER----------------------------------VAAEEKVHVEAERAAAEEKGRVEAERAAAEEKGHVEAKRaAAEEK 72 
                 1111111111111111..................................222233333333333333333333333333333333322012222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|2211_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 151.24
//
Query:       MMETSP1174-20130828|2213_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 577.82
//
Query:       MMETSP1174-20130828|2218_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 392.09
//
Query:       MMETSP1174-20130828|2223_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|2220_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 665.68
//
Query:       MMETSP1174-20130828|2227_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 1781.85
//
Query:       MMETSP1174-20130828|2228_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 569.20
//
Query:       MMETSP1174-20130828|2229_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 751.60
//
Query:       MMETSP1174-20130828|2231_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 399.97
//
Query:       MMETSP1174-20130828|2233_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 852.58
//
Query:       MMETSP1174-20130828|2236_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1913.84
//
Query:       MMETSP1174-20130828|2238_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1174-20130828|2241_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|2245_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|2244_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-34  115.7   0.0      6e-34  115.3   0.0    1.1  1  TIGR00235 udk: uridine kinase
     0.0016   15.3   0.0     0.0039   14.1   0.0    1.6  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.003   14.7   0.0     0.0041   14.3   0.0    1.1  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.004   14.7   0.0     0.0057   14.2   0.0    1.2  1  TIGR00455 apsK: adenylylsulfate kinase
     0.0082   13.8   0.0      0.011   13.4   0.0    1.2  1  TIGR00152 TIGR00152: dephospho-CoA kinase
  ------ inclusion threshold ------
      0.014   11.7   0.0      0.018   11.3   0.0    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.02   12.2   0.0      0.028   11.8   0.0    1.2  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      0.027   11.8   0.0      0.035   11.4   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      0.032   10.3   0.0      0.041   10.0   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   1.3e-36     6e-34       6     112 ..     101     207 ..      96     208 .] 0.98

  Alignments for each domain:
  == domain 1    score: 115.3 bits;  conditional E-value: 1.3e-36
   TIGR00235   6 tiiigiaGasgsGkttvaekivellkkekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvile 112
                  +++giaG+ gsGk+t+a+ i++ l +++i+ +s+DnyYkd s ++++ r + nfDhPdald+dl++eh+ +Lk+g ++ +P Yd+  h+r++ +v+v+p kv+++e
  MMETSP1174-20130828|2244_1 101 VVVVGIAGGTGSGKSTLARAIRQGLPESEIAYLSHDNYYKDISGLSFEMRASHNFDHPDALDTDLMYEHVMKLKDGIEISMPTYDFGTHKRMETSVRVHPCKVILVE 207
                 599******************************************************************************************************98 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.5e-06    0.0039     144     172 ..      98     129 ..      68     136 .. 0.82
   2 ?   -2.0   0.0      0.69   3.1e+02     208     226 ..     189     207 ..     181     208 .] 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.5e-06
   TIGR02788 144 kknii...isGgtgsgKTTflkalvkliPkee 172
                 + n++   i+GgtgsgK T+ +a+ + +P+ e
  MMETSP1174-20130828|2244_1  98 GMNVVvvgIAGGTGSGKSTLARAIRQGLPESE 129
                 55666222579***************999976 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.69
   TIGR02788 208 kdllescLRlrPDrillgE 226
                 ++ +e+++R++P +++l E
  MMETSP1174-20130828|2244_1 189 HKRMETSVRVHPCKVILVE 207
                 6779999*********988 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.1e-06    0.0041     134     158 ..      96     123 ..      74     131 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
   TIGR02782 134 aarknilvv...GGtgsGkttLanalla 158
                    +n++vv   GGtgsGk tLa a+ +
  MMETSP1174-20130828|2244_1  96 FDGMNVVVVgiaGGTGSGKSTLARAIRQ 123
                 4557887652237***********9865 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05    0.0057      15      48 ..      98     131 ..      84     150 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   TIGR00455  15 kqksvvlWltGlsgsGkstianalekkLeekglr 48 
                 + + vv+ ++G +gsGkst+a a+ + L e+ + 
  MMETSP1174-20130828|2244_1  98 GMNVVVVGIAGGTGSGKSTLARAIRQGLPESEIA 131
                 56678999******************99988765 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05     0.011       1      21 [.     103     123 ..     103     143 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-05
   TIGR00152   1 iigltGgigsGKstvakilkd 21 
                 ++g+ Gg gsGKst+a+++++
  MMETSP1174-20130828|2244_1 103 VVGIAGGTGSGKSTLARAIRQ 123
                 79***************9987 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05     0.018      28      55 ..     104     131 ..      97     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
   TIGR02442  28 vlirGekGtaKstaaRaLaallpdievv 55 
                 v i+G  G++Kst+aRa+++ lp+ e  
  MMETSP1174-20130828|2244_1 104 VGIAGGTGSGKSTLARAIRQGLPESEIA 131
                 5699*******************98764 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-05     0.028      29      73 ..     103     146 ..      84     154 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.1e-05
   TIGR02323  29 vlgivGesGsGkstllkalaarlladaGevtyesrsr.elellals 73 
                 v+gi G +GsGkstl  a+ + l     e+ y s ++  +++  ls
  MMETSP1174-20130828|2244_1 103 VVGIAGGTGSGKSTLARAIRQGLPE--SEIAYLSHDNyYKDISGLS 146
                 8899***************997754..4677777776566776665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.6e-05     0.035      36      72 ..     103     138 ..      77     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.6e-05
   TIGR02324  36 lvalsGksGaGkstllkslyanYlpesgrilvrhege 72 
                 +v ++G +G+Gkstl +++ ++ lpes    + h + 
  MMETSP1174-20130828|2244_1 103 VVGIAGGTGSGKSTLARAI-RQGLPESEIAYLSHDNY 138
                 67899************99.55678877777777655 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0     9e-05     0.041     485     504 ..     103     122 ..      83     130 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9e-05
   TIGR01846 485 viGivGpsGsGkstltkllq 504
                 v+Gi G +GsGkstl++ ++
  MMETSP1174-20130828|2244_1 103 VVGIAGGTGSGKSTLARAIR 122
                 79**************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      281  (0.0685032); expected 82.0 (0.02)
Passed Vit filter:                       107  (0.0260848); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.34u 0.30s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 596.82
//
Query:       MMETSP1174-20130828|2247_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       442  (0.107752); expected 82.0 (0.02)
Passed bias filter:                      224  (0.0546075); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 624.41
//
Query:       MMETSP1174-20130828|2246_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 871.13
//
Query:       MMETSP1174-20130828|2248_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-05   20.2   0.0    0.00016   18.9   0.0    1.5  1  TIGR00661 MJ1255: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.8e-08   0.00016     226     273 ..     540     588 ..     492     596 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.8e-08
   TIGR00661 226 el.denvelrrlteddfkedlksaeavitsGGfelisEALalgkpllvv 273
                 el   n +++ l++ df e++ks +  i +GG  +  EAL + kp+ v 
  MMETSP1174-20130828|2248_1 540 ELmSSNKKFIELQRADFGELFKSMDCFIVHGGLGTTVEALRMHKPVAVT 588
                 34478999*************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 1987.92
//
Query:       MMETSP1174-20130828|2251_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|2249_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1373.89
//
Query:       MMETSP1174-20130828|2252_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1421.71
//
Query:       MMETSP1174-20130828|2250_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1237.07
//
Query:       MMETSP1174-20130828|2255_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 617.37
//
Query:       MMETSP1174-20130828|2254_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1174-20130828|2256_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 519.96
//
Query:       MMETSP1174-20130828|2258_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|2257_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.0   0.0      0.079   10.7   0.0    1.7  1  TIGR01754 flav_RNR: putative ribonucleotide reductase-associated flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01754  flav_RNR: putative ribonucleotide reductase-associated flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.9e-05     0.079      69     107 ..     318     356 ..     262     371 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.9e-05
   TIGR01754  69 evkdfiaelaekpknvaifGtGetqfGddlycgavdrla 107
                  + +f+ ++    +++++ G G+  +G+dl+ +a++++ 
  MMETSP1174-20130828|2257_1 318 SLDRFMSNICSGKDTITVRGQGNFDWGEDLFSRALKKVK 356
                 57899******99**********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 1529.40
//
Query:       MMETSP1174-20130828|2259_1  [L=2079]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2079 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.40u 0.23s 00:00:01.63 Elapsed: 00:00:01.12
# Mc/sec: 2428.37
//
Query:       MMETSP1174-20130828|2260_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 898.10
//
Query:       MMETSP1174-20130828|2261_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00085   16.5   0.1    0.00085   16.5   0.0    2.1  3  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.11   4.7e+02      13      57 ..      93     136 ..      83     141 .. 0.67
   2 ?   -1.8   0.1     0.079   3.2e+02     244     283 ..     169     209 ..     135     235 .. 0.60
   3 !   16.5   0.0   2.1e-07   0.00085      89     216 ..     279     400 ..     256     421 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.11
   TIGR00569  13 tsedqlsekRvdanekfreeeeeeekvleakaitLtveEElelvk 57 
                 ++ d l +++++   k++e+e  e++ l    ++L+++E  +l++
  MMETSP1174-20130828|2261_1  93 AEADPLRNEKIQEICKWIENEDRENH-LLEWVFQLDSDERTDLIN 136
                 44667777788888888877655554.445678899999999887 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.079
   TIGR00569 244 lidivrelkklkkkeee.erseevaklkkkleeCksalenl 283
                 + d ++ ++ + ++e+  +  ee+++    +++C +a ++ 
  MMETSP1174-20130828|2261_1 169 IRDFTNWINMMSQQERSmDVDEESQSTDLEVQHCDEADRDN 209
                 34444444544444433134567777777777887766554 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 2.1e-07
   TIGR00569  89 FyLnnsvmeydPkiivltcvFlAcKveefnvsieqFvknlketrekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiadkflnevlltDvvllytPsqiaLaailse 216
                 F   n v+    + + +t++ +AcK ee +    + +  + ++   + eevL+ E +++q  +++++v   y+    Fl+    v+ + + +e     a  + ++ l    +lly Ps +a a+++ +
  MMETSP1174-20130828|2261_1 279 FCSSNDVLRGRLQLVGITALLIACKYEEIYPPEVRDCVYITDH-AYTREEVLSMETEMLQHFEYNITVPTGYQ----FLIRYLKVM-GCTPKEAASFRASYYAERSLQEHDMLLYKPSLVAAASVYLA 400
                 66667777777788899***********998888888888877.6677************************8....777666666.5556666666666778888888889**********999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1192.98
//
Query:       MMETSP1174-20130828|2265_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 535.50
//
Query:       MMETSP1174-20130828|2262_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|2263_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 841.43
//
Query:       MMETSP1174-20130828|2269_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-39  131.4   0.0    8.9e-39  130.9   0.0    1.2  1  TIGR00730 TIGR00730: TIGR00730 family protein
    3.3e-15   53.7   0.0    4.5e-15   53.3   0.0    1.2  1  TIGR00725 TIGR00725: TIGR00725 family protein


Domain annotation for each model (and alignments):
>> TIGR00730  TIGR00730: TIGR00730 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   4.3e-42   8.9e-39       3     175 ..      23     198 ..      21     201 .. 0.92

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 4.3e-42
   TIGR00730   3 vcvycgaspgakaeyselAeelGallakaGwklvyGGgrvglmgaiaraameaggvavgvsvevlkseelvseeatelivve..dmheRKrmlaelsdaFvalPGGfGtleElmevltlsqlgih.nkpiilfniegffdklleflksliqegfisakdlelikvvdtvkevvekv 175
                 v vy+++s ++ +++++lA  lG++la++G + v GGgr+g mga+++a ++agg  v v+ e+ + +    + a+e++++   d+ eRK +l e +d  ++lPGG Gt++E+m+v +  qlg   + pi ++n  gffd+l+  ++  ++eg is ++ + ++  +t + +++ +
  MMETSP1174-20130828|2269_1  23 VLVYASSSRTTPDRFLDLATSLGKKLAEEGHTCVNGGGRTGCMGALNQACKDAGGKVVCVIHEKWVVDGEKFDFADEMLITRggDLSERKSKLLENADCVISLPGGLGTFDEIMDVACRKQLGFVpEIPICVINARGFFDGLMSQIRRAVEEGLISLEKADTVHAEETAETALDWC 198
                 89***********************************************************999988887777888888875338**************************************8725688899******************************9999988887765 PP

>> TIGR00725  TIGR00725: TIGR00725 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   2.2e-18   4.5e-15       6     112 ..      26     139 ..      21     195 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 2.2e-18
   TIGR00725   6 viGsseid.eevyelayrvgkelakkglilinG.GrtGvmEasskgakekgGlvvgilPsed.degNaya...tikvktglnfa.RnvilvesadvvvvvGGevGtlsEiliay 112
                 ++ ss++  ++ ++la  +gk+la++g+  +nG GrtG m a  +  k++gG vv ++ ++   +g ++    ++ +  g +   R   l+e+ad v+++ G+ Gt+ Ei+ + 
  MMETSP1174-20130828|2269_1  26 YASSSRTTpDRFLDLATSLGKKLAEEGHTCVNGgGRTGCMGALNQACKDAGGKVVCVIHEKWvVDGEKFDfadEMLITRGGDLSeRKSKLLENADCVISLPGGLGTFDEIMDVA 139
                 455555444899***************99998637************************99888999874333688999999999*************************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 944.76
//
Query:       MMETSP1174-20130828|2268_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-42  142.9  11.6    8.8e-42  141.6   8.0    1.6  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   8.0   2.1e-45   8.8e-42       6     376 ..      19     399 ..      14     403 .. 0.81

  Alignments for each domain:
  == domain 1    score: 141.6 bits;  conditional E-value: 2.1e-45
   TIGR00837   6 iagtviGaGmlalPvstagawfivsllllillwllmllsgllllEvlltyea...........gaslatlakdllGkkgniiaglsllfvlyiLlyAYisaggsilselleeasgials...araivll..ftvllaslvvlstk......lvdritrvllvgkiiafvlvlvlllpkvktdlLldvakdtsylpyilsalPvlltsFGfhgnvpslvkyldknvkkvkksiliGsaiaLvlYilWqlavlGnlpreeflkiiekggnldglvealqevlkskalelalelFsnlAlisSflgvaLglfdyladlfkf..ddskkgrlktalltflpPlvlalfy..PegfllalgyaGlaat.iwavilPallawkaRkkkpnavyrvlggnkllll 376
                 + g ++G+G+lalP ++   +  +s+++l+++w+  +++gll+ Ev+l+++             +s+ ++a+++lGk + + +++ ++++ y+ l AY++++g++l +l+++ s ++++   +++ ++   +++l+++ v+++ k      l d i+++l+ +++++f  +l +llp  + +  ++     s+  ++ sa+P+l+ +  fh+++ps+v   d+n  +++ +i+ Gs+++ ++Y+l ++av+G++p  + ++++e+          ++++l    l+lal +Fs+  l +S+lg+a +  d + +l+    + ++++ +  + ltflpPl  a ++  P  f   l++ G+  +  +  i+P +++w+ R++         gg  +l++
  MMETSP1174-20130828|2268_1  19 VVGNTLGGGVLALPSVSLPSGLGPSTIALFVTWVGCVATGLLIAEVVLNINDhndgnnaggekSTSIMDMAEQTLGKPAGVASCAIFVLLNYSFLLAYMCKSGEVLDQLFRSISLVSSNgmlQQIHPFSvlYALLIGGAVLVGHKgdaeinLLDTIQNLLMGVLFLSFGTMLAGLLPAAELSDWVR-----SDPSAVPSAMPMLVCALVFHNVIPSVVTQQDRNPSRIRTAIIGGSLVPVIMYVLFNAAVVGAIPTGDTTTLVEQ----------VSSALG--PLALALPIFSMTTLTASILGIATSQVDEFSALMPTciTSQNTESMLGTSLTFLPPLAAACVLtgPGTFEAVLEFGGTFGClTLFGIIPCAMVWRQRESAMPGIELLPGGTAALTV 399
                 78999*****************************************998764444444444446899*****************************************998877644431113333322337888888888775423333378999999******************999998888.....4455566789******************************************************9776666554..........444433..68899***************************98644666777777889*******8764443499**********665515678*********998765544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 1196.51
//
Query:       MMETSP1174-20130828|2271_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|2273_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|2266_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.72
# Mc/sec: 1475.71
//
Query:       MMETSP1174-20130828|2275_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 113.66
//
Query:       MMETSP1174-20130828|2272_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 548.58
//
Query:       MMETSP1174-20130828|2274_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.64
# Mc/sec: 1507.56
//
Query:       MMETSP1174-20130828|2276_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1552.98
//
Query:       MMETSP1174-20130828|2270_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-179  595.1   0.0   1.6e-179  594.8   0.0    1.1  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    1.1e-75  251.6   0.0    1.7e-75  251.1   0.0    1.2  1  TIGR00262 trpA: tryptophan synthase, alpha subunit
      4e-52  175.2   0.1      7e-51  171.1   0.0    2.7  1  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    3.2e-16   56.9   0.0    5.5e-16   56.2   0.0    1.3  1  TIGR02079 THD1: threonine dehydratase
    7.3e-11   39.7   0.1    3.7e-06   24.2   0.0    2.2  2  TIGR01139 cysK: cysteine synthase A
    1.2e-10   39.1   0.1    1.9e-06   25.3   0.0    2.3  2  TIGR01136 cysKM: cysteine synthases
    1.2e-09   35.5   0.1      1e-05   22.6   0.0    2.8  3  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.3e-08   31.5   1.0    1.1e-07   29.3   0.0    2.5  2  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
    6.1e-08   29.8   0.2    2.4e-07   27.9   0.2    2.0  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    1.3e-07   29.3   0.2    1.2e-05   22.8   0.1    2.3  2  TIGR01138 cysM: cysteine synthase B
    2.4e-07   27.9   0.2    4.3e-07   27.0   0.2    1.3  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.2e-05   22.5   0.0    0.00015   18.8   0.0    2.2  1  TIGR00260 thrC: threonine synthase
    1.5e-05   21.7   0.1    2.9e-05   20.7   0.1    1.4  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
     0.0043   13.6   1.3       0.43    7.0   0.3    2.4  2  TIGR01137 cysta_beta: cystathionine beta-synthase
  ------ inclusion threshold ------
      0.014   12.1   0.1       0.03   10.9   0.0    1.6  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family


Domain annotation for each model (and alignments):
>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.8   0.0  5.9e-182  1.6e-179       2     384 ..     352     733 ..     351     734 .. 0.99

  Alignments for each domain:
  == domain 1    score: 594.8 bits;  conditional E-value: 5.9e-182
   TIGR00263   2 kfgefGGqyvpevllealeelekayekakkdeefkkeleellkeyagrptpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqilekegrlPdaviacvGGGsnaiGifaafiedeeveligveagGkGidtekhaatlskGkeGvlhGaktkllqdedGqieeahsvsaGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdletvaka 384
                 kfg++GG+y+pe+l +a eele+a+ +a +d++++kele++ k++ g ptpl+fak+l+++ ggaki+lkredl htGahkinna+gqalla rlGkkriiaetGaGqhGvatat++a+lglec++ymGa d+erqklnvfrm+ lga+v+pv+sGs+tlkda+nea+rdWvt+v++thy++GsavGphPfPeivre+qsvig+e++eq+l+++g+lPd+v+acvGGGsnaiG+fa+f++de v+l+g eagG+Gi+   ++atl+ G++GvlhGa t++lq+ dGq  +  s+saGldypgvgP+ha+l++ gra y+a+td+e+le++++l++ eGiipale+sha+ +  ++a++l  d+ vvvnlsGrGdkd+ tvak 
  MMETSP1174-20130828|2270_1 352 KFGDYGGRYIPETLAAAHEELEAAWIEAFNDPSYHKELEYYRKDFIGGPTPLYFAKRLTEECGGAKIWLKREDLAHTGAHKINNAIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGAVDTERQKLNVFRMKTLGATVIPVESGSRTLKDAINEAMRDWVTNVRTTHYLIGSAVGPHPFPEIVRELQSVIGREAREQMLDQAGKLPDVVVACVGGGSNAIGTFAPFLDDEGVRLVGCEAGGEGISA-LNSATLTLGSPGVLHGAATYVLQTPDGQTAKGSSISAGLDYPGVGPQHAFLKDAGRADYVAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLGADKDVVVNLSGRGDKDMPTVAKV 733
                 69**************************************************************************************************************************************************************************************************************************************************************86.5789*********************************************************************************************************************985 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.1   0.0   6.1e-78   1.7e-75       4     256 .]      71     320 ..      68     320 .. 0.98

  Alignments for each domain:
  == domain 1    score: 251.1 bits;  conditional E-value: 6.1e-78
   TIGR00262   4 lkkkeekafvpFvtagdPdleksleiiktlvkaGadalElGvpfsDPlaDGptiqaaelRAlkagvkvekalellkkvrekasniPivlltyynlifkkgveeFyakakeagvdgvlvaDlPleeaddlleaakkhgvkqiflvaPtaeeerlkkiaekseGfvYlvsvaGvtgarerveeevkelikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlvkiieeklddeekaleeleefvkelk 256
                  ++k+e af+pFvtag+P+ + +++++  +++ Gad++ElG+pfsDP aDG tiq++++ Al+  v++ k+l l+++ re+  ++Pivl+ yyn+++++g+ + ++ a++agvdg +++DlP ee + ++++++++gv+ + l+aPt+ ++r+  +a+ ++ f+Y+vsv+Gvtg+r  + +++ +l+++v+a ++ P +vGFGis + qv e+ +l +d+v+vGsA++++i+ +   +e+  +eleef++ lk
  MMETSP1174-20130828|2270_1  71 CRSKNEAAFIPFVTAGYPSPDDTVDLLLAMQSGGADVIELGMPFSDPQADGATIQHTNQVALTFDVNIPKCLSLVAEARERGLTVPIVLMGYYNPVLQYGLTKLVEDAAAAGVDGFIIVDLPPEEGHPFVKSCEENGVAFVPLIAPTTTDDRIAYLATAASSFIYCVSVTGVTGTRGGLPADLGDLVARVRAQTDLPLAVGFGISDASQVAEVAAL-SDAVVVGSAVLNTIDSS--APENRAKELEEFIRGLK 320
                 6889******************************************************************************************************************************************************************************************************************99.889*************9..789999*******9986 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.0   2.6e-53     7e-51      64     416 ..     396     734 ..     385     737 .. 0.82

  Alignments for each domain:
  == domain 1    score: 171.1 bits;  conditional E-value: 2.6e-53
   TIGR01415  64 kigrPtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealee.edakyslGsvl......nhvllhqtviGleakkql.eeagekPdvivgcvGGGsnfaglafPfvadk...lsGk.edlkfiaaeskaaPkltkGeyrydfgdsagllPllkmytlGhdfvppavhagGlryhgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlkayeeal 416
                  ig PtPl+ ak+l e  g+ a+i++k+e+ + tG+hkin ai qa  a + G kr+++etGaGq G a ++ +a+l+l++ ++m +v  +++    + m++ ga vip      e G ++lk+          ai ea+ + + +   ++y++Gs +      + v   q+viG ea++q+ ++ag+ Pdv+v+cvGGGsn  g+  Pf+ d+   l G     + i+  + +  +lt G     +g ++ +l      t   +    ++ ++Gl y gv P+ + l   G  +  a+  +e +e   ++++ eGi+Pa e++ha+    ++ak +     +k ++++lsG G  d+ + +++l
  MMETSP1174-20130828|2270_1 396 FIGGPTPLYFAKRLTEECGG-AKIWLKREDLAHTGAHKINNAIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGAVDTERQKLNVFRMKTLGATVIPV-----ESGSRTLKD----------AINEAMRDWVTNvRTTHYLIGSAVgphpfpEIVRELQSVIGREAREQMlDQAGKLPDVVVACVGGGSNAIGTFAPFLDDEgvrLVGCeAGGEGIS--ALNSATLTLGSPGVLHGAATYVL-----QTPDGQTAKGSSISAGLDYPGVGPQHAFLKDAGRADYVAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLG---ADKDVVVNLSGRGDKDMPTVAKVL 734
                 589***********999876.8**************************************************************************************96.....669999987..........89****99887725689*****984333333455689**********75899*************************996111333211222222..22333444444444333333333.....3333445566677889**********************************************************98764...558999*******99999888877 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0     2e-18   5.5e-16      16     206 ..     400     604 ..     390     625 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 2e-18
   TIGR02079  16 etPlqknerlseky.kaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmP.vttPkqkvd..kvklfGgefievilvGdtfdeaaaaakkave...kegktl....ipPfddkdii.eGqgtvaveileqleee...kidlvlvpvGGGGlisGv.tsylkekskktkiigvePeG 206
                 +tPl   +rl+e+  +a+i+lkredl +  ++k+  a  +       ++++ +  + aG h    a  c  lg++ +++m  v t +qk++  ++k  G   i v     t  +a  +a+++     ++ ++l    + P   ++i+ e q+ ++ e  eq+ ++    +d+v++ vGGG  + G  + +l ++    +++g+e  G
  MMETSP1174-20130828|2270_1 400 PTPLYFAKRLTEECgGAKIWLKREDLAHTGAHKINNAIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGaVDTERQKLNvfRMKTLGATVIPVESGSRTLKDAINEAMRDWVtnvRTTHYLigsaVGPHPFPEIVrELQSVIGREAREQMLDQagkLPDVVVACVGGGSNAIGTfAPFLDDE--GVRLVGCEAGG 604
                 79********9876369********************9887777788899999999************************725699**9875578889**************99999999874311123344422225677777777367999**999999888766569**********98777514455443..45788888644 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.4e-08   3.7e-06       7     178 ..     400     583 ..     394     604 .. 0.71
   2 !   13.1   0.0   3.4e-05    0.0092     235     292 ..     669     726 ..     658     730 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.4e-08
   TIGR01139   7 ntPlvrLn.laeea.kaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkl....lkayGaelvLtd.gaegmkgaiekaee..lveetpnkylllkqfenpanpeihrk...ttapeilkdldgk....ldafvagvGtGGtit 178
                  tPl   + l+ee+  a++ +k e l  +++ k     + i +a  +  l k + i e+ +G  G+a a v+a  g++ ++ m + + +er+kl    +k++Ga ++  + g++  k ai++a    +++ +  +yl+ +       pei r+     ++e  +++ ++     d++va vG G    
  MMETSP1174-20130828|2270_1 400 PTPLYFAKrLTEECgGAKIWLKREDLAHTGAHKIN---NAIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGA-VDTERQKLnvfrMKTLGATVIPVEsGSRTLKDAINEAMRdwVTNVRTTHYLIGSAVGPHPFPEIVRElqsVIGREAREQMLDQagklPDVVVACVGGGSNAI 583
                 57776555444444246777777777777766654...44677888888999999****************************75.78999998777789******9665278889*****9964324555566777777777766777765422145566555553332333488888888776554 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.4e-05
   TIGR01139 235 ikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerY 292
                 ++v+d e++e   +l + eGi+  + +  av+  l++ak l++dk +vv l+  g++ 
  MMETSP1174-20130828|2270_1 669 VAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLGADKDVVVNLSGRGDKD 726
                 789**********************************************998888765 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.8e-09   1.9e-06       6     123 ..     399     519 ..     394     585 .. 0.85
   2 !   11.5   0.0   0.00011     0.029     234     295 ..     668     728 ..     658     731 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 6.8e-09
   TIGR01136   6 GntPlvrln.lseelk.aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkl....lkayGaelvlte.aeegmkgaiekak 123
                 G tPl   + l+ee+  a++++K E+   +g+ K   a   i +A     l k++ i e+ +G  G+a A v+a+ g++ ++ m + + +ER+kl    +k++Ga ++ +e +++  k ai++a 
  MMETSP1174-20130828|2270_1 399 GPTPLYFAKrLTEECGgAKIWLKREDLAHTGAHKINNA---IGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGA-VDTERQKLnvfrMKTLGATVIPVEsGSRTLKDAINEAM 519
                 679999999999998779*************9998766...779999999999*******************************86.67789886666799*****9966514555677777764 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR01136 234 vikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLs 295
                  ++v+d++ +e   +l + egi+  + +  av+ +l++ak+l  +dk++vv l+ +g++ + 
  MMETSP1174-20130828|2270_1 668 YVAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLG-ADKDVVVNLSGRGDKDMP 728
                 5789**************************************9.799999999999998665 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.52   1.4e+02      76     103 ..     202     229 ..     198     248 .. 0.82
   2 !   22.6   0.0   3.8e-08     1e-05      22     112 ..     416     506 ..     399     536 .. 0.86
   3 !    9.1   0.0   0.00048      0.13     224     298 ..     656     730 ..     646     732 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.52
   TIGR03945  76 vcaalGlkficvvDpkiseanlkllral 103
                  c++ G+ f++++ p +++  ++ l + 
  MMETSP1174-20130828|2270_1 202 SCEENGVAFVPLIAPTTTDDRIAYLATA 229
                 699***************9999888654 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 3.8e-08
   TIGR03945  22 velfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkfic...vvDpkiseanlkllralgaevevvee 112
                 +++++K E l  +g  K   A   + +a+   ++ ++  i E   G  ++a a+vca+lGl+ ++    vD++ ++ n+  +++lga+v  ve+
  MMETSP1174-20130828|2270_1 416 AKIWLKREDLAHTGAHKINNA---IGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIymgAVDTERQKLNVFRMKTLGATVIPVES 506
                 57999************9998...57999999*****************************98763336999999999999********99986 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00048
   TIGR03945 224 vpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldtv 298
                 +  +l+++   ++v v++ e++ + ++l++ egi+    +  +v+   ++++++ +++ vv+ l+ rG++ + tv
  MMETSP1174-20130828|2270_1 656 QHAFLKDAGRADYVAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLGADKDVVVNLSGRGDKDMPTV 730
                 45688999999**************************999999999999*************9999999877766 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.94   2.6e+02     182     208 ..     236     265 ..     226     320 .. 0.67
   2 !   29.3   0.0   3.9e-10   1.1e-07       2     193 ..     395     582 ..     394     716 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.94
   TIGR01275 182 ivvaaGsgGtiaGlslGlsaLkeeve...s 208
                  v  +G +Gt  Gl + l+ L ++v+    
  MMETSP1174-20130828|2270_1 236 CVSVTGVTGTRGGLPADLGDLVARVRaqtD 265
                 57788999*******999999998884331 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 3.9e-10
   TIGR01275   2 elillptPiqylkrlsekl.GaeiyikrDDltglelsGnkirkLefLlaealkkgadtvitvGaiqsnharatalvakklgLkavllLrkskkvadedeelkGnlLldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvGGsnslGalGyveavleia........eqlnlesevkfdsivvaaGsgGtia 193
                 ++i  ptP+ + krl+e+  Ga+i++kr+Dl+    +  ki      +  a++ g + +i+  +    h  ata+v + lgL++v+ +     v    e  k n++  k lga v  v++   +  +a+ e++++ + +  +  y i     +++G   + e v+e++        eq  l+++ k+ ++vva+  gG  a
  MMETSP1174-20130828|2270_1 395 DFIGGPTPLYFAKRLTEECgGAKIWLKREDLAH--TGAHKINNAIGQALLAVRLGKKRIIAETG-AGQHGVATATVCAMLGLECVIYMG---AVD--TERQKLNVFRMKTLGATVIPVESGSRTLKDAINEAMRDWVTNVRTTHYLIG----SAVGPHPFPEIVRELQsvigrearEQ-MLDQAGKLPDVVVACVGGGSNA 582
                 68999***********9983589********86..56788888777777789999998887655.367*****************9998...322..4556678899999****88888888888899999********999****94....45666666666666551111111155.3444679999****99998766 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5     4e+02      74     129 ..     323     383 ..     316     384 .. 0.61
   2 !   27.9   0.2   8.9e-10   2.4e-07       1     183 [.     401     602 ..     401     614 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.5
   TIGR01127  74 akivmPesaplskvkatksyGa.eviLhGadfDeaykla.eel...aeeegrvfvhafdDe 129
                 a+i  P+ a  + v+at s+G  e  L+ +  D   ++  e+l   +ee ++ +++af+D+
  MMETSP1174-20130828|2270_1 323 AVIDNPDRAWSKEVSATPSLGTdEDALRKKFGDYGGRYIpETLaaaHEELEAAWIEAFNDP 383
                 4566688888888999999987345666555554444431222111345567899999986 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 8.9e-10
   TIGR01127   1 tpleksstlsditg.aevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPes.aplskvk..atksyGaevi..LhG.adfDeayklaee..laeeegrvfv.......hafdDefviaGqGtlgle....iledlpdv.dtvivPvGGGGLisGvasavkklnpevkviGvea 183
                 tpl  ++ l++++g a+++lk e l +tG++ki  a+ +   +   +kkr +    aG h    a    + g++++i m  + +  +k++    k++Ga vi    G +++ +a + a +  + + + + ++       h+f  e v   q  +g e    +l++ +++ d+v++ vGGG    G  +      ++v+++G ea
  MMETSP1174-20130828|2270_1 401 TPLYFAKRLTEECGgAKIWLKREDLAHTGAHKINNAIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGAVdTERQKLNvfRMKTLGATVIpvESGsRTLKDAINEAMRdwVTNVRTTHYLigsavgpHPFP-EIVRELQSVIGREareqMLDQAGKLpDVVVACVGGGSNAIGTFAPF-LDDEGVRLVGCEA 602
                 79999999999885379**********************99999999999999999****888888999**********87636667765227899*****943244245677777665422333333333224444446664.4555678888887222234555666688888899987655543332.2345677777766 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   4.4e-08   1.2e-05       7     112 ..     399     505 ..     394     527 .. 0.82
   2 ?    4.1   0.0     0.022       5.9     228     286 ..     669     728 ..     639     731 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.4e-08
   TIGR01138   7 Gntplvrlkrllpe.edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaa...lkayGaelilvd 112
                 G tpl   krl+ e  ++++++k e    +G+ k   a+   + a + G+     ++ e+ +G  G+a a v+a++G++  + m +  +e +k     +k+ Ga +i v+
  MMETSP1174-20130828|2270_1 399 GPTPLYFAKRLTEEcGGAKIWLKREDLAHTGAHKINNAIGQALLAVRLGKK---RIIAETGAGQHGVATATVCAMLGLECVIYMGAVDTERQKLNvfrMKTLGATVIPVE 505
                 67***********97889********************9988888888764...5899999***********************98666555532344889999888765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.022
   TIGR01138 228 vdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdryls 286
                 v v  ++  +   +l + egi     +  av+ +l++a+ l     vv  ++ rGd+ + 
  MMETSP1174-20130828|2270_1 669 VAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLGAdKDVVVNLSGRGDKDMP 728
                 56777888888999*************************985435566668899999765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   1.6e-09   4.3e-07      20     180 ..     401     580 ..     398     613 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.6e-09
   TIGR02991  20 tplveseslsellG.vpvllklesrqttGsfklrGatn.avlslsdaeraaGvvaastGnhGralayaakkegvravicmselvp.qnkvdeirr..lGaevriv...Grsqddaqeever.lvke....rGlv..mlppfdhadivaG.qGtlgle....vveqvpdlalvlvplsGGGl 180
                 tpl  ++ l+e +G  ++ lk e    tG+ k+  a+  a+l++  + +++ +  + +G+hG a a   +  g+++vi m ++    +k++  r+  lGa v  v    r+  da +e  r  v +    + l+  ++ p   ++iv   q  +g e    +++q+ +l  v+v   GGG 
  MMETSP1174-20130828|2270_1 401 TPLYFAKRLTEECGgAKIWLKREDLAHTGAHKINNAIGqALLAVRLG-KKRIIAETGAGQHGVATATVCAMLGLECVIYMGAVDTeRQKLNVFRMktLGATVIPVesgSRTLKDAINEAMRdWVTNvrttHYLIgsAVGPHPFPEIVRElQSVIGREareqMLDQAGKLPDVVVACVGGGS 580
                 89999999*99996379*****************9986266666555.5556778899**********************99864167888766533899987663323555677777655322221101233233688888899986548888887233344555555567777777774 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.6e-07   0.00015      17     338 ..     395     726 ..     385     728 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 5.6e-07
   TIGR00260  17 dlaegstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgnetvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispvkeklvtalaenakvlaikGdFDdaqdlvkeifedke......klklnsvNsinpa...rieaqktyafeiveqlgk...espdkvvvpvp.sgnfgailkGflekkelg...lpieklaiaaegaadiv...rrflksgdlepkedk..eTlstAmdignpsnverale..larrslgnledlkesvsdeeileaikklaeeegyllephtavavaalkklvekgvsatadpaKFeevvealtgnklkd 338
                 d + g t+l+ +++l+ee g+ ++++k + +  t+a K      ++++l +++  ++ +++    G  g a+a    ++ ++++v+ + +  ++  k  ++     +a+v+ ++      +d+++e++ d        +++++s+    p+     e q ++  e+ eq+     + pd vv  v+ ++n    ++ fl  + +     +    +i a ++a      + +l++   +  +++  +T ++   i+   +++ +    ++ +  g ++ +  +v+d+e+le  +kl + eg++    t  av  +++ +++     ad++    vv+ l+g + kd
  MMETSP1174-20130828|2270_1 395 DFIGGPTPLYFAKRLTEECGGAKIWLKREDLAHTGAHKINN--AIGQALLAVRLGKKRIIAETGAGQHGVATA-TVCAMLGLECVIYMGAVDTERQKLNVFRMKTLGATVIPVESGSRTLKDAINEAMRDWVtnvrttHYLIGSAVGPHPFpeiVRELQSVIGREAREQMLDqagKLPDVVVACVGgGSNAIGTFAPFLDDEGVRlvgCEAGGEGISALNSATLTlgsPGVLHGAATYVLQTPdgQT-AKGSSISAGLDYPGVGPqhAFLKDAGRADYV--AVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSL---GADKD----VVVNLSGRGDKD 726
                 566778999*****************************665..7*****************************.**************999999778888999999*******9887666666666666333334456888888776555422234678888899888875546699*********9899999999999877654555666777888877633322335788888777777777355.78889999999999976679***********..*********************9999999999999888755...45555....888999988876 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.1e-07   2.9e-05      18     182 ..     401     584 ..     397     614 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.1e-07
   TIGR01124  18 tplekaaklserl.knrvllkredlqpvfsfklrGaynkmaqlsaeqkakGvia.asaGnhaqGvalsakklGvkavivmpet.tp..eikvdavkafGgevvlh..G.enydeakakale..laqekgltf.....iapfddplvi.aGqGtvale....llrqveedldavfvpvGGGGliaG 182
                 tpl  a++l+e   + +++lkredl    + k+  a  + a l+     k +ia + aG h    a  ++ lG++ vi m +  t   ++ v  +k+ G+ v+    G  + ++a ++a++  +++ ++  +     + p+  p ++   q  ++ e    +l q  +  d v   vGGG  + G
  MMETSP1174-20130828|2270_1 401 TPLYFAKRLTEECgGAKIWLKREDLAHTGAHKINNAIGQ-ALLAVRLGKKRIIAeTGAGQHGVATATVCAMLGLECVIYMGAVdTErqKLNVFRMKTLGATVIPVesGsRTLKDAINEAMRdwVTNVRTTHYligsaVGPHPFPEIVrELQSVIGREareqMLDQAGKLPDVVVACVGGGSNAIG 584
                 999999***99872579******************9986.55666665666666257899988889999***********864244115666778899**9985311324566776666542222333333322222455555555414577777662222444444334455555666655554 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.3    0.0016      0.43      49     113 ..     436     503 ..     395     610 .. 0.75
   2 !    4.7   0.0    0.0077       2.1     245     297 ..     667     719 ..     658     728 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0016
   TIGR01137  49 miedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPe.kvseekvdv..lkalGaeivr 113
                  i +a    rl +   + e  +G  G+  a v+a+ G  c+i +      ++k++v  +k+lGa ++ 
  MMETSP1174-20130828|2270_1 436 AIGQALLAVRLGKKRIIAETGAGQHGVATATVCAMLGLECVIYMGAvDTERQKLNVfrMKTLGATVIP 503
                 4566666778888889999***********************99762466789999444689999984 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0077
   TIGR01137 245 eiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvl 297
                 +++++ dke ++   +l + eg++ +  +  av  +l++a++ + ++dv+v l
  MMETSP1174-20130828|2270_1 667 DYVAVTDKECLEGFNKLCRLEGIIPALETSHAVYQTLEIAKSLGADKDVVVNL 719
                 57899************************************999999888866 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.03      96     223 ..     451     585 ..     401     603 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
   TIGR01747  96 tfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeni...ekeGaevtitdl...nyddavrlankmaqekg..wvlvqdtaweGyekiptwimqGyatlaveaveqlrelgselpthvllqaGvGslaGav 223
                 + + +  G+hG   a     lG+++v+ym    +  ++ n+   +  Ga+v+  +       da+  a++   ++      +  +   G +  p  + +  + +  ea eq+ + + +lp  v+   G Gs a + 
  MMETSP1174-20130828|2270_1 451 IIAETGAGQHGVATATVCAMLGLECVIYMGAVDTERQKLNVfrmKTLGATVIPVESgsrTLKDAINEAMRDWVTNVrtTHYLIGS-AVGPHPFPEIVRELQSVIGREAREQMLDQAGKLPDVVVACVGGGSNAIGT 585
                 56667889*********************99999888777532266799988555411134555555555332222112223333.35778889888888999999999999999999999999888888877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.77u 0.36s 00:00:01.12 Elapsed: 00:00:00.96
# Mc/sec: 1016.04
//
Query:       MMETSP1174-20130828|2278_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-07   25.6   0.2      0.038    9.8   0.1    3.3  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   9.3e-06     0.038     120     161 ..     140     187 ..      81     200 .. 0.76
   2 !    4.7   0.0   0.00033       1.4     131     153 ..     220     242 ..     209     253 .. 0.81
   3 !    8.1   0.0     3e-05      0.12     122     154 ..     245     277 ..     241     287 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.3e-06
   TIGR00870 120 andestseftkgitalilAihkqnyeivklLlekg.asve.....ara 161
                   d ++++  +g t+li A ++  + ivklL+  g a+v+      r+
  MMETSP1174-20130828|2278_1 140 RADVNKERTDNGGTPLITASQNGHLDIVKLLVCEGhANVNhatkdQRC 187
                 45667778889*********************8875899944444444 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00033
   TIGR00870 131 gitalilAihkqnyeivklLlek 153
                   ++l++A++  n+ i k L++ 
  MMETSP1174-20130828|2278_1 220 SCSPLHIAAQIGNLDIAKCLVNE 242
                 569******************85 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 3e-05
   TIGR00870 122 destseftkgitalilAihkqnyeivklLlekg 154
                 ++s ++++ g t+l++A    n e++  L+ kg
  MMETSP1174-20130828|2278_1 245 ATSCCQMFDGSTPLHIASFYGNFEVLMFLVRKG 277
                 567789999**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 781.38
//
Query:       MMETSP1174-20130828|2279_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-51  171.2   0.0    5.9e-51  170.8   0.0    1.2  1  TIGR00070 hisG: ATP phosphoribosyltransferase
    1.8e-23   80.5   0.0    3.5e-23   79.5   0.0    1.4  1  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
    0.00047   17.5   0.1    0.00091   16.5   0.1    1.4  1  TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein


Domain annotation for each model (and alignments):
>> TIGR00070  hisG: ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   4.3e-54   5.9e-51       2     183 .]      56     238 ..      55     238 .. 0.97

  Alignments for each domain:
  == domain 1    score: 170.8 bits;  conditional E-value: 4.3e-54
   TIGR00070   2 riAlp.KGrleeetlkllekaglklskkeerkliasaedeevevlllrakdiptyvekgaadlGitGkDlleEseadvvelldlgfgkcklvlAvpeesdvesledlkegkriATkypnltreylekkg..vkveivkleGavElapllgladaIvDivetGttLrengLkiieeilessarlia 183
                  +A+p KGrl ++++k+l+ +g++  ++e r  ia+ +d ++++++l a+di+tyv +g++d+GitG+D+++Ese dv+ +++lgfgkc+l++ +p + ++e++e+l+ gkri T++pn+ ++y+++     + +i  ++G+vE+a+ lglad IvD+vetGtt+r+ gL+++++i++++a+li+
  MMETSP1174-20130828|2279_1  56 LFAVPkKGRLHQTIVKMLKGSGFDYYRPE-RLDIAHCKDLPISFVFLPASDIATYVGEGNVDIGITGEDIIAESEVDVKVIMKLGFGKCRLCVQAPVADALENAEKLA-GKRIVTSFPNVSKKYFDSIAggEQTSIKCISGSVEAACGLGLADGIVDLVETGTTMRAAGLEEVSTIMNTQAVLIV 238
                 58***************************.9999**************************************************************************.9***************9864459999************************************************96 PP

>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.5e-26   3.5e-23      10      93 ..     245     328 ..     239     331 .. 0.94

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 2.5e-26
   TIGR03455  10 kekieelltrlegvlearkkvllklnvpkdsLdeilavlPglegPTvskladedwvaVeavvdekevneliekLkevGAedIlv 93 
                 +e++ + ++r+eg l+a+++v++++nv+++sL+ ++a++Pg ++PT+++l++ +wv+V+++v++k+ ++++++L+++GA+d+l+
  MMETSP1174-20130828|2279_1 245 HELLSVATRRIEGYLTANRYVMVTYNVHRSSLRSACAITPGKRSPTITSLDEVNWVSVSSLVEKKKAASVMDDLQKIGAKDVLT 328
                 48888899*************************************************************************985 PP

>> TIGR01729  taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.7e-07   0.00091      37     126 ..     103     191 ..      98     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.7e-07
   TIGR01729  37 GadivaalasGdvdiGvvGssplaaaasreveievflvvdkiGksealvar.egagiekpedlkGkkv..avPfvstthysllaalkhwkvdp 126
                  +di + +  G+vdiG  G     + a  ev+++v++ ++  Gk    v    +  +e  e l+Gk++  + P vs  +++ +a+ ++  ++ 
  MMETSP1174-20130828|2279_1 103 ASDIATYVGEGNVDIGITGED---IIAESEVDVKVIMKLG-FGKCRLCVQApVADALENAEKLAGKRIvtSFPNVSKKYFDSIAGGEQTSIKC 191
                 5799***********998765...667889****998876.7888877754155689**********9333577**********999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 960.43
//
Query:       MMETSP1174-20130828|2280_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1355.89
//
Query:       MMETSP1174-20130828|2281_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-49  166.3   0.1    2.5e-49  165.9   0.1    1.2  1  TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
    1.1e-05   22.5   0.0       0.13    9.3   0.0    3.0  2  TIGR02136 ptsS_2: phosphate binding protein


Domain annotation for each model (and alignments):
>> TIGR00975  3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.1   1.2e-52   2.5e-49       1     313 [.      48     390 ..      48     392 .. 0.84

  Alignments for each domain:
  == domain 1    score: 165.9 bits;  conditional E-value: 1.2e-52
   TIGR00975   1 ltgaGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqiaak.........tvdfgasDaplse...aalkkegeqllqlplvigavvvayNlpgvs...keeLkLdgdvlakiflGkikkWndpaiaalNPevklP.etkitvvhRsDgSGttavftkyLskvske.wkekvgaGktvnwpag.vgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaesikaaaagvkista...........kedaksltdapgdeayPivaatylivlkkqkd.eekakalkaflewalt.egqkaaddldyiplPesvvkkvkkavnt 313
                 l g+G+t p + + ++++ +e++    v++ y+++GS++G+++++ +           dfg+ D+pls+   +a++++g +++++p  +ga+    N+p+     +  L++ g +lakif  +i++W+d++i a+NP +++P +++i v hR  gS tt   t+yL +  +  w  +   G++v+w  g   a+g + +aa+++++ +aigY++ ++ + + ls+ +l+ns G f    +  ++  +a +++++               ++sl + pg+ ++Piva  y+    +q + e ++  lkaf+e+ lt +gq+  +d ++i++P ++ + +++a+++
  MMETSP1174-20130828|2281_1  48 LSGSGTTNPSKYFWEIMSLFEAEAMPAVKMSYRAVGSSTGMHEFVGAdnpdknytaYSDFGSGDVPLSQekyDAVTSAGRTVVHFPFLLGAMSFFHNIPNLPtsgEYGLNMTGCLLAKIFSRTITTWDDDEIVAINPSLSVPsGQEIYVYHRVYGSSTTHGITSYLHASCPSeWP-SSMVGTSVDWADGtYDAQGSGNMAAYIASVEYAIGYIDSGHGHDDGLSEVELENSEGLFQSSLEAKARGGVALAASEGLalgvvptdpteSFANVSLHNMPGNVTWPIVALSYIYADVNQTEaESTGPLLKAFMEYILTdDGQSLVEDYNFIGIPTAIMDVANAAIDA 390
                 5799****************9887778*****************85422222222257**********98888899999**************999988875111456**********************************4489********************9987655*9.6679*******99778999999***********************************775443333333333333332234455777775556789*****************9998887774778999**********89999***************999998865 PP

>> TIGR02136  ptsS_2: phosphate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   7.3e-05      0.15      41     154 ..      46     176 ..      36     289 .. 0.74
   2 !    9.3   0.0   6.1e-05      0.13     247     293 ..     326     374 ..     312     376 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.3e-05
   TIGR02136  41 itadGSstvaplveaa..aeefkkkk.pnvkvtvqgaGsgtGikklinGt.........vdignssRpikeeekeklkqkgkelielkvAvdglavvVnkknvkvk.....dLtveqlkkIyeGeitnWke 154
                 it +GS t  p    +     f+ ++ p+vk +  + Gs+tG+++++  +         +d+g  + p+ +e   ++  +g +++ ++  + +++ + n  n +       ++t   l kI++  it+W +
  MMETSP1174-20130828|2281_1  46 ITLSGSGTTNPSKYFWeiMSLFEAEAmPAVKMSYRAVGSSTGMHEFVGADnpdknytaySDFGSGDVPLSQEKYDAVTSAGRTVVHFPFLLGAMSFFHNIPNLPTSgeyglNMTGCLLAKIFSRTITTWDD 176
                 66777777777554441156676654169999***********999854322223333379*****************************************998755544688899************87 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 6.1e-05
   TIGR02136 247 gsYqlsrplfiy..vnkkpakk.keevkeFidfvlskdtqeklveelgYi 293
                  ++++    +iy  vn++ a++  ++ k+F++++l++d ++ lve+  +i
  MMETSP1174-20130828|2281_1 326 VTWPIVALSYIYadVNQTEAEStGPLLKAFMEYILTDD-GQSLVEDYNFI 374
                 578887777777336666666679************96.777***99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.61
# Mc/sec: 1211.70
//
Query:       MMETSP1174-20130828|2283_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|2285_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 311.64
//
Query:       MMETSP1174-20130828|2286_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.49
# Mc/sec: 1306.42
//
Query:       MMETSP1174-20130828|2290_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   23.7   0.1    4.7e-06   23.7   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.1e-09   4.7e-06     210     279 ..      56     128 ..      36     130 .. 0.72
   2 ?   -5.9  10.4         1   4.1e+03      16     139 ..     171     293 ..     159     299 .. 0.43

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.1e-09
   TIGR01622 210 sgdipnsiadlkLYvGnlh...fnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAle 279
                 +    +    + LYv n++    + +E eLr++Fe FG ie+v+l+  + +        i+F+d++  +e l+
  MMETSP1174-20130828|2290_1  56 DKAEDDDSRGRTLYVANIFkaaREDAELELRNVFEGFGGIESVELNDQDSSNTGARSARIEFRDSSSIQEILT 128
                 444444455688******95555567889****************8765544444456788888888777665 PP

  == domain 2    score: -5.9 bits;  conditional E-value: 1
   TIGR01622  16 eadrdrerdksrersRdrsrdRersrske..rdrdfdrrdrdrdkyrdrerrsr.krreserererekerrredevrrkrkeredrrerrek.eerlkeelteeeRDartvfvlqlalklreRdlkEF 139
                 +a  ++ ++k+     +r + Re + +++   +  ++r++r++       +++r k+++ e++    ++  re ++++++k re    r e+ +er+++  +  + D+  v    ++ k + +  kEF
  MMETSP1174-20130828|2290_1 171 DAAMTQFEEKEAAEATRRASLREGDADQDgfTEVVYKRKHREGAVNGTDDGKRRkKKQPLELSNFYRHQ-IREAKQEQLKKLRE----RFEEdKERIEKMKESGNLDQHEVDFAVFDCKEHRKSAKEF 293
                 443344344444444444444444444431145557777887765544333333033333433333222.23333332333322....2222122333333334455555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       309  (0.0753291); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 977.35
//
Query:       MMETSP1174-20130828|2291_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|2292_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.21s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 534.78
//
Query:       MMETSP1174-20130828|2293_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 552.93
//
Query:       MMETSP1174-20130828|2294_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 887.42
//
Query:       MMETSP1174-20130828|2295_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|2297_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 157.37
//
Query:       MMETSP1174-20130828|2296_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   67.0   0.0    2.2e-19   66.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.7e-06   23.8   0.0    8.3e-06   23.2   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0091   12.4   0.0      0.012   12.0   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.6e-22   2.2e-19       2     198 ..      26     211 ..      25     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.6e-22
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLa.adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig.aLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasvaevl 198
                 tg+ +a+k +R + ae+e       Rei+l ++L+hPniv+L D  ++e   l  vFey +   l++ L   +  L +      + q L ++a  h++ v+hRDLkPqn+++  +++    k+ DFG++ a +  v+         t+ev+ +  Y aP+ L g     +  D+++ G i+ e   G++   G s a+ l
  MMETSP1174-20130828|2296_1  26 TGEIIALKKIRLE-AEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTER-KLTLVFEYLDQ-DLKKYLDfCERGLDPSMIKSFLFQLLRGVAFCHHHRVLHRDLKPQNLLINREGE---LKLADFGLArAFGIPVRS-------YTHEVV-TLWYRAPDVLMGSRKySTPVDIWSIGCIFAEMASGRPLFAGTSEADQL 211
                 788899*****98.89999999999***********************99.8889****985.677777537999*************************************98876...5778***97234444444.......678877.779*******9976415568**********************999865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.1e-09   8.3e-06      64     137 ..      66     149 ..      32     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.1e-09
   TIGR03724  64 vydv..dpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                 +ydv  ++++ ++v+ey++ ++lk++l+  e         ++l ++ + v+ +H+++++h Dl ++N+++ ++++l l DfGL++
  MMETSP1174-20130828|2296_1  66 LYDVvhTERKLTLVFEYLD-QDLKKYLDFCERgldpsmikSFLFQLLRGVAFCHHHRVLHRDLKPQNLLInREGELKLADFGLAR 149
                 3444113455678889986.45666665544455687777788889999*******************9956899********97 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.7e-06     0.012     234     303 ..      78     148 ..      42     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.7e-06
   TIGR01982 234 ltlewidgipvsdleklkeaGldlkalaenlvesflkqvl..rdgfFHaDlHpGNilvakdgkiialDfGiv 303
                 l+ e++d   ++      e+Gld+  + + l + +   ++  ++ + H Dl p N+l++++g++ + DfG+ 
  MMETSP1174-20130828|2296_1  78 LVFEYLDQ-DLKKYLDFCERGLDPSMIKSFLFQLLRGVAFchHHRVLHRDLKPQNLLINREGELKLADFGLA 148
                 45566663.56666777788999988888888777655543367899***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.63
# Mc/sec: 653.66
//
Query:       MMETSP1174-20130828|2300_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-14   50.7   0.0    4.7e-14   50.1   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.2e-09   36.1   0.0    8.6e-09   33.4   0.0    1.9  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    2.2e-06   25.2   0.0    3.2e-06   24.7   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    1.6e-05   22.2   0.0    2.4e-05   21.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.6e-17   4.7e-14      39     153 ..     182     303 ..     153     309 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.6e-17
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek...eea...nvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpkn.allk 153
                 + ++vl v  GtG     ++ ++ + +t+vD++++m+++a+  +++k    +a    +  i++ aeeL f++ sfdav  +  l  vtd +k + e+aRVlkpggr + +e  + ++ ++l+
  MMETSP1174-20130828|2300_1 182 SCSRVLEVGVGTGPNFDFYTPAVLKTLTAVDPNPHMIDIARGHLTAKtggDNApgvTAALIQGRAEELEFSSGSFDAVVTTLVLCSVTDAKKSMAEIARVLKPGGRWLFMEHVRSEEsQMLA 303
                 6789*********99888888888*****************9988775432222225789***************************************************99988855554 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.11   1.2e+02     154     218 ..      39     105 ..      29     111 .. 0.80
   2 !   33.4   0.0   8.3e-12   8.6e-09      21     133 ..     173     291 ..     161     315 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.11
   TIGR02072 154 glrflsleelkallkkefellkleeelitlsFedvlevlrslKkvGannlsqks..r.lltrkklkal 218
                  + f +++ l + + ++ +  ++e +l + +++d l ++ sl  +G + ++  +  + ++++k++ +l
  MMETSP1174-20130828|2300_1  39 MNVFQDKKFLTRYFRNS-RTHSCEAKLLNYWHTDQLGAVTSLNVLGTSTTTHVKsaAhCTEKKYVAKL 105
                 56677788888888885.78889999999999**************9998887777458888777665 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 8.3e-12
   TIGR02072  21 kkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...........nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                 ++L  +l+++  +  ++vL++G GtG  ++ +   + +  l+a+D  + m+ +a+ +l+           +   i+g +e+l++   sfD +v  l+l  + d ++ +ae+arvlkpgG  +f 
  MMETSP1174-20130828|2300_1 173 HELFCHLDKS--C--SRVLEVGVGTGPNFDFYTPAVLKT-LTAVDPNPHMIDIARGHLTaktggdnapgvTAALIQGRAEELEFSSGSFDAVVTTLVLCSVTDAKKSMAEIARVLKPGGRWLFM 291
                 5666666664..4..5**********8888888888877.9**************9999999********99***********************************************98885 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.1e-09   3.2e-06      97     152 ..     238     293 ..     179     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.1e-09
   TIGR02752  97 nvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvclet 152
                    l+ g a el ++  sfd v   + l  v d  + + e+arv+kpgg+   +e 
  MMETSP1174-20130828|2300_1 238 TAALIQGRAEELEFSSGSFDAVVTTLVLCSVTDAKKSMAEIARVLKPGGRWLFMEH 293
                 4579*********************************************9888775 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.3e-08   2.4e-05      50     164 ..     183     303 ..     156     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.3e-08
   TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk......kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinrtlksylla 164
                   +vl+vG G G   +  +   ++  t++D   ++i++A+ h +++         +    + ++eel+ + + sfD+v++  vl  v+d ++ + e+a++lkpgg  ++    r   s +la
  MMETSP1174-20130828|2300_1 183 CSRVLEVGVGTGPNFDFYTPAVLKtLTAVDPNPHMIDIARGHLTAKTGGdnapgvTAALIQGRAEELEFS-SGSFDAVVTTLVLCSVTDAKKSMAEIARVLKPGGRWLFMEHVRSEESQMLA 303
                 46899999999988887777666669***************98876554456776788899999999777.788******************************987766666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 982.00
//
Query:       MMETSP1174-20130828|2298_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 2514.56
//
Query:       MMETSP1174-20130828|2304_1  [L=1491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.15s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 2981.75
//
Query:       MMETSP1174-20130828|2303_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-17   61.1   1.2    2.4e-17   60.5   0.8    1.2  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.8   5.9e-21   2.4e-17       3      60 ..      44     101 ..      43     108 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 5.9e-21
   TIGR02381   3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevv.qgekGah 60 
                 +G vk+f   kG+Gfi++ + +eD+f h+s+iq+DG+++L  G  v+f++  +++kG++
  MMETSP1174-20130828|2303_1  44 SGSVKFFS-EKGYGFITPASGGEDVFVHFSAIQKDGFKSLNEGETVTFDICwDEQKGKS 101
                 699**997.5***************************************9724567865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1174-20130828|2305_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2012.83
//
Query:       MMETSP1174-20130828|2306_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1363.89
//
Query:       MMETSP1174-20130828|2307_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 884.82
//
Query:       MMETSP1174-20130828|2309_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1174-20130828|2312_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   13.6   0.6     0.0057   13.4   0.4    1.0  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.4   1.4e-06    0.0057     306     402 ..      12     108 ..       6     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-06
   TIGR01525 306 ekslelkkveveeveevpgkgvsakvdgeeevrigneklleeleaeee..kvkeeleeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkk 402
                 ++  e++++++++ +ev +++++a +d+ ee  +g e+++++l++e+   +++++++ee ++++  v+ ++ d+l   + l Del  ++k++ia+L++k
  MMETSP1174-20130828|2312_1  12 QTTEEKENMDTTKAKEVDSEQLNAVLDD-EEKPVGHEDFVRQLTKETApeASEQKFSEEDDEQRYSVYDYQLDRLSKHVPL-DELIGSSKDVIANLHEK 108
                 4444555666889**************9.69**********9999998876677777776666666666666666665555.77889999999999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|2313_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1476.32
//
Query:       MMETSP1174-20130828|2315_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.4   0.7      0.021   13.0   0.5    1.2  1  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   5.1e-06     0.021       2      44 ..      50      94 ..      49     107 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-06
   TIGR04104  2 kCknCkekfsy..kellkslfsk.kkkikCpnCgekqyltaksrkk 44
                kC +C + f+   ++++  +++  ++++ Cp+C +  + +++ + k
  MMETSP1174-20130828|2315_1 50 KCDSCLSFFQTtnEQAY-HTWFLvNDNLLCPECTKVTEAEKEEESK 94
                79999998865215666.555555***********99998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 654.45
//
Query:       MMETSP1174-20130828|2314_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1697.00
//
Query:       MMETSP1174-20130828|2326_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 558.42
//
Query:       MMETSP1174-20130828|2323_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2369.20
//
Query:       MMETSP1174-20130828|2329_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.8   0.1      0.066   11.1   0.1    1.4  1  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.6e-05     0.066      28      58 ..       4      34 ..       2      46 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.6e-05
   TIGR02606 28 EVvRaaLRlleerEarleaLraaiqeGeqsg 58
                E  R+ +Rllee+ +++  + +a +eG++++
  MMETSP1174-20130828|2329_1  4 ELAREKVRLLEESKTATSSVMSATVEGADDP 34
                778*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1174-20130828|2330_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|2327_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 1931.44
//
Query:       MMETSP1174-20130828|2336_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    9.1   5.2       0.46    7.3   0.3    2.0  2  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent


Domain annotation for each model (and alignments):
>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3   0.00058       2.4     104     120 ..       2      18 ..       1      30 [. 0.83
   2 ?    7.3   0.3   0.00011      0.46     100     120 ..      33      53 .]      25      53 .] 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00058
   TIGR03946 104 GdvfGWatqqdGrvvtd 120
                 Gd  GW   qdG + +d
  MMETSP1174-20130828|2336_1   2 GDFTGWDVAQDGAISQD 18 
                 999***********988 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00011
   TIGR03946 100 aallGdvfGWatqqdGrvvtd 120
                 ++ lGd  GW   qdG + +d
  MMETSP1174-20130828|2336_1  33 CTGLGDFTGWDVAQDGAISQD 53 
                 5679************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|2335_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|2344_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1174-20130828|2345_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1020.38
//
Query:       MMETSP1174-20130828|2346_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00066   17.2   1.5      0.054   10.9   0.4    2.0  2  TIGR02536 eut_hyp: ethanolamine utilization protein
  ------ inclusion threshold ------
      0.028   12.3   2.4      0.023   12.5   1.0    1.4  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit


Domain annotation for each model (and alignments):
>> TIGR02536  eut_hyp: ethanolamine utilization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.4   2.6e-05     0.054      82     143 ..       3      64 ..       2      71 .. 0.78
   2 !    5.9   0.1   0.00093       1.9      81      98 ..      71      88 ..      60      91 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.6e-05
   TIGR02536  82 filefLLkgkkvyileegieykkyentapkalkqkfkeyeeklksfG.iefidsenkitkesk 143
                 +i ++L+kgk+++++ +      + +  + ++ + ++  e +l++   ++  ++e ++ ke++
  MMETSP1174-20130828|2346_1   3 KICNHLFKGKETIAVAKTFRTWDNFR-NQMRIAEEYERKEAELEAIRrVNKAENEKREKKENE 64 
                 699************99999877777.799*********999998665655555555555554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00093
   TIGR02536 81 kfilefLLkgkkvyilee 98
                 +i ++L+kgk+++++ +
  MMETSP1174-20130828|2346_1 71 LKICNHLFKGKETIAMAK 88
                4799**********9987 PP

>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   1.1e-05     0.023      70     119 ..      28      77 ..       6      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR01416  70 rtkeeleelkalkkkeLkdpnseaeqtdearelrsgkeewlvvigiCtHL 119
                 r++  ++e+++ k++eL+     +++++e+re+++++e+++ +++iC+HL
  MMETSP1174-20130828|2346_1  28 RNQMRIAEEYERKEAELEAIRRVNKAENEKREKKENEEKMAHALKICNHL 77 
                 77778888889999889888555888888899999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       386  (0.0941004); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1174-20130828|2353_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|2354_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|2366_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|2361_1  [L=1094]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3208.80
//
Query:       MMETSP1174-20130828|2377_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1128.73
//
Query:       MMETSP1174-20130828|2379_1  [L=1220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    7.8  26.2       0.31    7.1  18.2    1.3  1  TIGR01069 mutS2: MutS2 family protein
        7.1    3.6  22.1       0.57    7.2   0.0    2.5  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  18.2   0.00015      0.31     485     606 ..     977    1103 ..     971    1138 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00015
   TIGR01069  485 AfeiaqrlglpseiiekAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqea....lkaakkeveeiirelkekkiekakekkatell.k 606 
                   +e a    +p+++++  +e++   ++   ++  ++ ++   + +++++  + l++++ ++++l+q+ ++ ++++++ ++++++ +q++     ++ ++  ++  +elk++ +++  +++ ++ + +
  MMETSP1174-20130828|2379_1  977 SMEPALTTPVPHQVVGGRQEHMQMTSQMTPQMTPQIMQQSLYQLQQQQQQHQQLQQQQQQHQQLQQQQQQHQQQHQQQQHQQQQHQQQQqqqqQQQQQQHQQQQQQELKHQFQQAIMVQRMHQQIhN 1103
                  56777888899****9999999988888888888888877777777777777777777777777777666555554444444443333300003333333333333333333333333333444421 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00028      0.57     100     131 ..     370     401 ..     366     415 .. 0.86
   2 ?   -4.6  14.0         1   2.1e+03     266     345 ..    1017    1092 ..     989    1113 .. 0.35

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00028
   TIGR02397 100 ddirellenvkyapskskykvYiiDEvhmLsk 131
                 d + ++++ + +    + +kv i DE+hmL +
  MMETSP1174-20130828|2379_1 370 DLVDRIKKAIGLVNEGAGFKVIIADECHMLKN 401
                 556678888999999999************86 PP

  == domain 2    score: -4.6 bits;  conditional E-value: 1
   TIGR02397  266 leellekgvdleklledliellrdlllvkktkselleveeeeeeslkekaeklslekllellkilleaekelkvsenkri 345 
                  l +l +++++ ++l ++  +  ++l   +++++++ ++++   ++ ++++++ ++++ ++  +  +++++elk++ ++ i
  MMETSP1174-20130828|2379_1 1017 LYQLQQQQQQHQQL-QQQQQQHQQLQQQQQQHQQQHQQQQ---HQQQQHQQQQQQQQQQQQQQHQQQQQQELKHQFQQAI 1092
                  22222222222222.2222221222222222211111111...1112222222222222223333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1159  (0.282545); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                       132  (0.0321794); expected 4.1 (0.001)
Passed Fwd filter:                        32  (0.00780107); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.17u 0.31s 00:00:02.48 Elapsed: 00:00:00.97
# Mc/sec: 1660.07
//
Query:       MMETSP1174-20130828|2384_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|2383_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    4.4  10.0          2    4.4   6.9    1.0  1  TIGR01069 mutS2: MutS2 family protein
        2.4    4.9  13.9        2.5    4.9   9.6    1.0  1  TIGR00984 3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
        9.1    3.2  46.2         10    3.1  32.0    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.9    0.0015         2     539     624 ..       9      94 ..       1     111 [. 0.74

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0015
   TIGR01069 539 keleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatellkklkeekakvp.qkpknlqa 624
                  ++  +kk   qka++  +r    k+ + k aq++  aa+k  ++  + + ekk+++a +++a e     k+  ++++ +k + ++a
  MMETSP1174-20130828|2383_1   9 AQAAAEKKTAAQKAADNAARTAAGKTAALKTAQQKQTAAQKTTDNAAQAAAEKKKKAALKTAA-ENASGEKTAAVEAAaEKTTCVEA 94 
                 567778999999999******************************999999999777766665.55544444444444044444444 PP

>> TIGR00984  3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.6    0.0018       2.5      83     165 ..       6      89 ..       1     112 [. 0.71

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0018
   TIGR00984  83 kavaeaaktakkaaek.vdksa.ekvretavykevsqsvedvkeesdegvladkeqrrrkeelekrtegrklakskvveaneevl 165
                 + +a+aa + k aa+k  d++a    ++ta+ k+ +q    +++  d++  a  e+ ++k +l+ + e+++ +k + vea  e +
  MMETSP1174-20130828|2383_1   6 DNAAQAAAEKKTAAQKaADNAArTAAGKTAALKTAQQKQTAAQKTTDNAAQAAAEK-KKKAALKTAAENASGEKTAAVEAAAEKT 89 
                 334444444455555414444414579***************99999977666665.5566778999999999999888876654 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  32.0    0.0073        10     135     241 ..       3      89 ..       1     114 [. 0.36

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0073
   TIGR02794 135 qaaEakakaeaeaKa.ekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerk 241
                 +aa+++a+a+ae+K  ++ka++ Aa+ a+ + +a ++a++k+ a     ++k    a+ a+ae+++Ka+ +                 A++ a  e+ a+ +a+ae++
  MMETSP1174-20130828|2383_1   3 KAADNAAQAAAEKKTaAQKAADNAARTAAGKTAALKTAQQKQTA-----AQKTTDNAAQAAAEKKKKAALK----------------TAAENASGEKTAAVEAAAEKT 89 
                 24444444444433333444333444444443222222222222.....1222222224444444444222................222233333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       735  (0.179181); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|2386_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    8.7  24.4       0.19    8.7  16.9    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  16.9   4.7e-05      0.19     172     254 ..      17      91 ..       1     103 [] 0.32

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 4.7e-05
   TIGR02794 172 eakkkaEaeeakkkaeaeakKakaeaeaKakae......eakaKaeae....AkaKAeaeAkaKaeaeakakakaeaerkaakqeaeladla.G 254
                  a+      +a +k +a +  a+ ea++Ka +e      +      a     A++KA+ eA + ae++a+             +  + ++++ G
  MMETSP1174-20130828|2386_1  17 TAQD-----AALAKEKAAR-DAEREAQRKATEEhnnfrsK----GSAHdealAQQKAAHEAYREAERNAANHR---------SSYRASEATFrG 91 
                 1111.....1122222222.23455555555555533221....21112233555666665555553333221.........111122222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 503.51
//
Query:       MMETSP1174-20130828|2387_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|2389_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|2385_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-91  301.7   0.1    5.5e-91  301.4   0.0    1.1  1  TIGR01163 rpe: ribulose-phosphate 3-epimerase
    3.8e-06   24.5   0.1    0.00074   17.0   0.0    2.2  2  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
    0.00015   18.9   0.1      0.057   10.5   0.0    2.2  2  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
     0.0069   13.7   0.0      0.011   13.1   0.0    1.2  1  TIGR01334 modD: modD protein
  ------ inclusion threshold ------
      0.017   10.4   0.0      0.021   10.0   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.019   12.0   0.1      0.086    9.9   0.0    1.9  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase


Domain annotation for each model (and alignments):
>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.4   0.0   8.1e-94   5.5e-91       1     210 [.      59     273 ..      59     274 .. 0.96

  Alignments for each domain:
  == domain 1    score: 301.4 bits;  conditional E-value: 8.1e-94
   TIGR01163   1 liapsilsadfarlgeevkkveeaGadliHvDvmDghfvPnltlGpavlealrkl.tklpldvHlmvenvdkyiekfakagadlitvHveasehikrllklikelGvkagvvlnPatplealeevlekvdlvllmsvnPGFggqkFipevlekirevrklidekekeilievDGGvkeeniaevaeaGadvlvagsaifkad....dykeaikkl 210
                 liapsilsadfa lg evk+  +aGad++H+DvmD+h+vPnlt+Gp v++alrk+ ++ p+dvHlmv++vd++i +fa+aga++it+H eas h++r+l+lik++G+kag+v+nPatpl++ ++v++k+d++llmsvnPGFggq+Fip +l+k re+rk+ide++ +i++++DGGv   ni+evaeaG+d++vagsaifk +     y+e+ik++
  MMETSP1174-20130828|2385_1  59 LIAPSILSADFASLGAEVKNAMAAGADVVHFDVMDNHYVPNLTIGPLVCSALRKAgVENPIDVHLMVSPVDRIIGDFAEAGATYITFHPEASPHVDRTLSLIKSYGCKAGLVFNPATPLDICKYVMDKLDIILLMSVNPGFGGQSFIPGTLDKAREARKMIDESGFDIRLQIDGGVSGANIKEVAEAGVDMFVAGSAIFKDPrtedAYAETIKEM 273
                 59****************************************************999**********************************************************************************************************************************************9873333566666666 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0038       2.6      67     133 ..      74     146 ..      55     156 .. 0.80
   2 !   17.0   0.0   1.1e-06   0.00074     156     202 ..     223     270 ..     207     274 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0038
   TIGR03128  67 yEaeqafaaGadivt..vlg..vaddatikeavkaA.kkegkevlvDl.invkDkakrakelkelGvdiiavH 133
                  E+++a+aaGad+v   v+     ++ ti   v  A +k+g e  +D+ + v+ + + + + +e+G+ +i++H
  MMETSP1174-20130828|2385_1  74 AEVKNAMAAGADVVHfdVMDnhYVPNLTIGPLVCSAlRKAGVENPIDVhLMVSPVDRIIGDFAEAGATYITFH 146
                 5999*********963366522457789998887663677888888865678888889999999999999999 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.1e-06
   TIGR03128 156 vkevkvavAGGikldtikeviklgadvvivGsaitkAedpaea.akki 202
                   ++++ + GG++  +ikev+++g d+ + Gsai k    ++a a++i
  MMETSP1174-20130828|2385_1 223 GFDIRLQIDGGVSGANIKEVAEAGVDMFVAGSAIFKDPRTEDAyAETI 270
                 4567889***************************99776665524444 PP

>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0016       1.1     190     213 ..      74      97 ..      68     102 .. 0.88
   2 !   10.5   0.0   8.3e-05     0.057     212     255 ..     211     254 ..     207     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0016
   TIGR00078 190 eeaeealeagadiilLDNmkpeei 213
                 +e+++a++agad++ +D m+++ +
  MMETSP1174-20130828|2385_1  74 AEVKNAMAAGADVVHFDVMDNHYV 97 
                 6899***************99866 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.3e-05
   TIGR00078 212 eikeavellkekapsvlvEaSGgitldnveeyaetgvdvisvga 255
                 + +ea ++++e    +++   Gg++  n++e+ae gvd+   g+
  MMETSP1174-20130828|2385_1 211 KAREARKMIDESGFDIRLQIDGGVSGANIKEVAEAGVDMFVAGS 254
                 56788899999999************************987765 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.6e-05     0.011     218     270 ..     208     260 ..     202     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
   TIGR01334 218 tpqqvkelaellklldknitlavaGGinkenvaeylelGidlfitsaPyyaaP 270
                 t+++++e+ +++      i l + GG+   n++e +e+G+d+f++ +  +  P
  MMETSP1174-20130828|2385_1 208 TLDKAREARKMIDESGFDIRLQIDGGVSGANIKEVAEAGVDMFVAGSAIFKDP 260
                 5566777777777777889*************************987766665 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   3.1e-05     0.021     190     282 ..     134     235 ..     116     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.1e-05
   TIGR03315 190 lfkkvddefid...kispkvvksvtlstlhGc......PpeeiekiarylleekklhtfvklnPtllGykfvrdildelGfdyivlkeesfsedlqledava 282
                  f++  + +i    + sp+v ++++l   +Gc       p+    i++y++++ ++  ++ +nP + G++f+  +ld++     +++e  f+  lq++ +v+
  MMETSP1174-20130828|2385_1 134 DFAEAGATYITfhpEASPHVDRTLSLIKSYGCkaglvfNPATPLDICKYVMDKLDIILLMSVNPGFGGQSFIPGTLDKAREARKMIDESGFDIRLQIDGGVS 235
                 555555666655557889999999999999993333222344457***************************************************998875 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   1.4e+02      67      80 ..      76      89 ..      59      98 .. 0.76
   2 ?    9.9   0.0   0.00013     0.086     152     194 ..     224     266 ..     210     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.21
   TIGR00693 67 vdlAlaldadgvhl 80
                v+ A+a++ad+vh 
  MMETSP1174-20130828|2385_1 76 VKNAMAAGADVVHF 89
                45577888888885 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00013
   TIGR00693 152 leipvvaIGGitlenveevlkagvdgvavvsaimaaadvaaaa 194
                  +i+    GG++  n++ev++agvd  +  sai++ + +++a 
  MMETSP1174-20130828|2385_1 224 FDIRLQIDGGVSGANIKEVAEAGVDMFVAGSAIFKDPRTEDAY 266
                 56666667**************************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1371.74
//
Query:       MMETSP1174-20130828|2397_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1174-20130828|2398_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   15.5   0.2     0.0016   15.2   0.2    1.2  1  TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family


Domain annotation for each model (and alignments):
>> TIGR03755  conj_TIGR03755: integrating conjugative element protein, PFL_4711 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   3.9e-07    0.0016     350     413 ..      16      79 ..       8      85 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-07
   TIGR03755 350 keaveevekklekLdreieslklElelrkelasntalailerkeareaessrgkeqedsedkrl 413
                 +  ve+ e ++++L++ +e++++E e+r++++++++++  +  + +++ +  +  ++d+ ++++
  MMETSP1174-20130828|2398_1  16 EGIVENQEGEIARLTKVMEDIAMEEEIRRRIVEESVITQTDTGSGADVTDGVHAVSNDEGEQQV 79 
                 5567788999***************************999999888887777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 457.84
//
Query:       MMETSP1174-20130828|2393_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.69
# Mc/sec: 1080.78
//
Query:       MMETSP1174-20130828|2399_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 275.98
//
Query:       MMETSP1174-20130828|2405_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|2406_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 166.21
//
Query:       MMETSP1174-20130828|2410_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|2412_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|2417_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|2418_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|2426_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|2428_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.5    5.2   8.8        1.6    7.0   0.1    2.5  2  TIGR03831 YgiT_finger: YgiT-type zinc finger domain


Domain annotation for each model (and alignments):
>> TIGR03831  YgiT_finger: YgiT-type zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1   0.00038       1.6       1      15 [.      10      24 ..      10      39 .. 0.87
   2 ?    0.9   2.7      0.03   1.2e+02      32      40 ..      63      71 ..      33      72 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00038
   TIGR03831  1 CpiCggeelegktkt 15
                Cp C + e+e+ktk+
  MMETSP1174-20130828|2428_1 10 CPECTEAEKEEKTKN 24
                ****99999999976 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.03
   TIGR03831 32 awvCpqCGE 40
                +w C++C +
  MMETSP1174-20130828|2428_1 63 GWCCDHCDM 71
                899****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|2429_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|2430_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|2431_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|2440_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|2444_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.9   0.3      0.026   12.7   0.2    1.0  1  TIGR01598 holin_phiLC3: holin, phage phi LC3 family


Domain annotation for each model (and alignments):
>> TIGR01598  holin_phiLC3: holin, phage phi LC3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   6.3e-06     0.026       5      59 ..       6      62 ..       3      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.3e-06
   TIGR01598  5 vRlKnkvvliallgalflliqsild.sfgvewlsv.vellnaviaviltllavvGvi 59
                 ++ + vvl+ + g++++++ ++l+ s++  wl v +  l  v+   +  +a+vGv+
  MMETSP1174-20130828|2444_1  6 FKFMSGVVLTQMGGVVLTVGPTVLKpSHSHSWLGVvLTHLGGVVPTQTITFALVGVV 62
                678899**************77775489****9886899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|2449_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|2447_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-09   33.8   6.0    7.7e-09   33.8   4.2    1.8  2  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.17   6.9e+02      43      49 ..      34      40 ..       7      57 .. 0.53
   2 !   33.8   4.2   1.9e-12   7.7e-09      82     108 .]     146     172 ..     137     172 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.17
   TIGR04102 43 rkaevea 49
                ++ae+ a
  MMETSP1174-20130828|2447_1 34 KRAEIMA 40
                2233333 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.9e-12
   TIGR04102  82 tvtvektpnrndpCsCGsgkkykkCCa 108
                 t+  +k+p+ n+pCsCGsgkkykkCC+
  MMETSP1174-20130828|2447_1 146 TMPSSKKPKPNEPCSCGSGKKYKKCCS 172
                 677899********************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 918.64
//
Query:       MMETSP1174-20130828|2453_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 196.29
//
Query:       MMETSP1174-20130828|2441_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1673.16
//
Query:       MMETSP1174-20130828|2456_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1174-20130828|2461_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 268.10
//
Query:       MMETSP1174-20130828|2474_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|2470_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1174-20130828|2487_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   62.2   0.0    1.6e-17   61.9   0.0    1.1  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
    2.6e-07   28.4   0.1    3.6e-07   28.0   0.0    1.2  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit
     0.0018   15.0   0.0     0.0022   14.7   0.0    1.1  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
  ------ inclusion threshold ------
      0.041   10.7   0.7        1.3    5.7   0.0    2.1  2  TIGR03171 soxL2: Rieske iron-sulfur protein SoxL2


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   1.6e-20   1.6e-17     111     166 ..     101     152 ..      75     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 1.6e-20
   TIGR01416 111 vvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpyk 166
                  + ++CtHLGC+  +++     + ++CpCHgs+yd++g+vv+g PaP  la+ + +
  MMETSP1174-20130828|2487_1 101 GINAVCTHLGCVVPWNKA---ANKYMCPCHGSQYDQNGKVVRG-PAPLSLAIAHVE 152
                 56689******9868844...456*******************.*******98765 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.5e-10   3.6e-07      48      97 ..      94     143 ..      71     159 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.5e-10
   TIGR02694  48 erdivaf..silcthkGcpvsyeadaktfkcpchfsvfdpekaGqqvlGqat 97 
                 ++ i +f   ++cth Gc v +++ a+++ cpch s +d  ++G+ v G a 
  MMETSP1174-20130828|2487_1  94 DKTIETFgiNAVCTHLGCVVPWNKAANKYMCPCHGSQYD--QNGKVVRGPAP 143
                 55555441168*************************998..56888888775 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-06    0.0022      72     135 ..      97     158 ..      81     171 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-06
   TIGR03229  72 gelnalina.cshrgamlcrhkrgnkatytcpfhgwtfnnsgkllkvkdpedagypesfnkdgsh 135
                  e    ina c+h g+++  +k  nk  y cp hg  ++++gk+++   p + + ++  ++dg  
  MMETSP1174-20130828|2487_1  97 IETFG-INAvCTHLGCVVPWNKAANK--YMCPCHGSQYDQNGKVVRGPAPLSLAIAHVEDEDGQV 158
                 33333.5544*************998..9**************9987777766666666666655 PP

>> TIGR03171  soxL2: Rieske iron-sulfur protein SoxL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0057       5.8     181     194 ..     102     115 ..      90     121 .. 0.81
   2 ?    5.7   0.0    0.0013       1.3     233     260 ..     122     147 ..     116     159 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0057
   TIGR03171 181 ysaicqhlgctppy 194
                   a+c hlgc  p+
  MMETSP1174-20130828|2487_1 102 INAVCTHLGCVVPW 115
                 479*******9997 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0013
   TIGR03171 233 ihcdchgstydpykgaavltgptvrplp 260
                   c chgs yd    + v+ gp+   l 
  MMETSP1174-20130828|2487_1 122 YMCPCHGSQYDQ--NGKVVRGPAPLSLA 147
                 57*********6..56788888755554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 774.34
//
Query:       MMETSP1174-20130828|2491_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|2492_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 411.97
//
Query:       MMETSP1174-20130828|2493_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|2497_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|2499_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 212.13
//
Query:       MMETSP1174-20130828|2502_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    3.6  11.2          4    3.6   7.8    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.8   0.00097         4     317     389 ..      78     152 ..      12     173 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00097
   TIGR02442 317 eeqekeekkleekkeeakpdeekedes.eekekeeskkqe...eeepgkddekeedekeeaeeeaesaeevalepag 389
                 + ++++++++++kk++ +p++e++ ++  ++e ++ ++++   ++++ +dd+++ +++++a ee+++ ++++++  +
  MMETSP1174-20130828|2502_1  78 S-DSSDDENEPSKKRTSSPTAETPANKkMKTEGSKTGDSSdssDSDDSSDDSDDGKPTAKAMEEDSD-SDSSSDDDS 152
                 2.23333333333333334444444442222222222222211111112222222223333222222.222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 675.47
//
Query:       MMETSP1174-20130828|2498_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  101.2   0.2    4.5e-15   52.9   0.0    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
      3e-28   96.4   0.0    9.8e-15   51.9   0.0    2.0  2  TIGR00717 rpsA: ribosomal protein S1
    2.4e-17   60.4   1.4    1.8e-10   37.7   0.0    2.0  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    2.1e-11   40.7   1.0    1.4e-05   21.4   0.3    2.6  2  TIGR02063 RNase_R: ribonuclease R
    6.7e-05   19.2   0.3      0.099    8.7   0.0    2.2  2  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
     0.0002   18.8   1.7      0.017   12.5   0.2    2.7  2  TIGR00448 rpoE: DNA-directed RNA polymerase
  ------ inclusion threshold ------
      0.018   13.0   0.4        2.1    6.4   0.0    2.4  2  TIGR00202 csrA: carbon storage regulator


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   6.8e-16     4e-13     618     687 ..      76     146 ..      58     148 .. 0.90
   2 !   52.9   0.0   7.7e-18   4.5e-15     621     688 ..     178     244 ..     165     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 6.8e-16
   TIGR03591 618 vgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrk 687
                  g+  ++ v+ + dfgafv++  + dglvh S++++e v++ +d++++gd+v+v++l +d  +++v+ls+k
  MMETSP1174-20130828|2498_1  76 DGSEMDAVVKGVSDFGAFVDFGAEMDGLVHKSQMSTEFVKDASDIVSVGDTVHVRILRVDLaRNQVSLSMK 146
                 5777889999**************************************************6599*****98 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 7.7e-18
   TIGR03591 621 vyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidkkgrvklsrka 688
                    g+v  i+++gaf++l  g  gl+hiS+la++rve+ve+++++g++++v+v+ ++ +gr++ls+ +
  MMETSP1174-20130828|2498_1 178 RIPGTVRTITSYGAFIDLEAGVSGLLHISQLANTRVESVESIISVGEQISVRVTGVE-DGRISLSMTE 244
                 5679****************************************************9.6******975 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   1.7e-17   9.8e-15     182     257 ..      71     147 ..      54     151 .. 0.91
   2 !   42.5   0.0   1.2e-14   6.8e-12     184     259 ..     172     246 ..     161     255 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 1.7e-17
   TIGR00717 182 leklkegeevkGvVknitdfgafvdlgg.vdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkq 257
                 l  l  g+e+  vVk + dfgafvd g+ +dgl+h++++s   vk  s+iv vgd+v+v++++vD +++++sls+k 
  MMETSP1174-20130828|2498_1  71 LADLVDGSEMDAVVKGVSDFGAFVDFGAeMDGLVHKSQMSTEFVKDASDIVSVGDTVHVRILRVDLARNQVSLSMKP 147
                 5678899999***************99659********************************************995 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 1.2e-14
   TIGR00717 184 klkegeevkGvVknitdfgafvdlg.gvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlk 259
                  +++ +++ G V+ it++gaf+dl+ gv gllhi++l+  rv+  + i+ vg+++ v+v  v  e +risls+ + +
  MMETSP1174-20130828|2498_1 172 AMQPADRIPGTVRTITSYGAFIDLEaGVSGLLHISQLANTRVESVESIISVGEQISVRVTGV--EDGRISLSMTEYD 246
                 57889999***************8658********************************988..5799999998766 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.3   2.1e-08   1.2e-05     653     718 ..      80     143 ..      64     145 .. 0.84
   2 !   37.7   0.0     3e-13   1.8e-10     650     718 ..     177     240 ..     161     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.1e-08
   TIGR02696 653 lgtvvktta.fgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadid.drgklsl 718
                 + +vvk ++ fgafv +    dgl+h s++    + + v++  d++svg+ ++v i  +d  r ++sl
  MMETSP1174-20130828|2498_1  80 MDAVVKGVSdFGAFVDFGAEMDGLVHKSQM----STEFVKDASDIVSVGDTVHVRILRVDlARNQVSL 143
                 5678997644******************65....4689*********************955777776 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 3e-13
   TIGR02696 650 erflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadiddrgklsl 718
                 +r  gtv   t++gaf+ l  g  gllhis+   la+  rve+ve ++svge+i v ++ ++d g++sl
  MMETSP1174-20130828|2498_1 177 DRIPGTVRTITSYGAFIDLEAGVSGLLHISQ---LAN-TRVESVESIISVGEQISVRVTGVED-GRISL 240
                 6788**************************5...554.69********************987.77777 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   2.4e-08   1.4e-05     629     709 ..      77     145 ..      71     147 .. 0.88
   2 !   17.1   0.0     5e-07   0.00029     632     696 ..     179     231 ..     163     244 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.4e-08
   TIGR02063 629 GeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfel 709
                 G+e ++v+ +v+ fG Fv +   +++GLvh s+++ ++    +            + ++Gd+v+v++ +vd+ ++++ +++
  MMETSP1174-20130828|2498_1  77 GSEMDAVVKGVSDFGAFVDFGA-EMDGLVHKSQMSTEFV---K--------DASDIVSVGDTVHVRILRVDLARNQVSLSM 145
                 88999****************9.************7653...2........33456789******************9987 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5e-07
   TIGR02063 632 fegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvv 696
                   g + ++ts+G F+ Le   ++GL his+L +            + e+ + ++++G+++ v+v+
  MMETSP1174-20130828|2498_1 179 IPGTVRTITSYGAFIDLEA-GVSGLLHISQLANT-----------RVESVESIISVGEQISVRVT 231
                 5699***************.***********853...........22334445555555555555 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.4   0.00021      0.12     576     647 ..      77     136 ..      70     146 .. 0.73
   2 !    8.7   0.0   0.00017     0.099     562     612 ..     164     211 ..     138     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00021
   TIGR00358 576 geeFegvissvtrfGlfvrldengidglikistlendyyvfdkeklaligkkegkvykigDrvevkleevkl 647
                 g+e ++v++ v+ fG fv +    +dgl++ s ++ ++++             + +  +gD v+v++  v+l
  MMETSP1174-20130828|2498_1  77 GSEMDAVVKGVSDFGAFVDFG-AEMDGLVHKSQMSTEFVKDA-----------SDIVSVGDTVHVRILRVDL 136
                 5899****************9.99**********99886422...........2333455555555555555 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00017
   TIGR00358 562 vaDwlkaeylsdkvgeeFegvissvtrfGlfvrldengidglikistlend 612
                 +aD+   +y + + +++  g +  +t+ G f+ l+  g++gl++is l n 
  MMETSP1174-20130828|2498_1 164 AADLS--KYAAMQPADRIPGTVRTITSYGAFIDLE-AGVSGLLHISQLANT 211
                 55554..466667789999***************8.9***********984 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   2.9e-05     0.017      88     119 ..      83     115 ..      65     148 .. 0.75
   2 !    4.5   0.0    0.0083       4.9      85     116 ..     179     211 ..     173     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
   TIGR00448  88 evieivefGafvslGp.lddllhvsqvlddyvv 119
                  v  + +fGafv +G  +d+l+h sq+  ++v 
  MMETSP1174-20130828|2498_1  83 VVKGVSDFGAFVDFGAeMDGLVHKSQMSTEFVK 115
                 3556899******99659*********999874 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0083
   TIGR00448  85 veGevieivefGafvsl.Gplddllhvsqvldd 116
                 + G v  i+ +Gaf+ l   + +llh+sq+ + 
  MMETSP1174-20130828|2498_1 179 IPGTVRTITSYGAFIDLeAGVSGLLHISQLANT 211
                 6799************73469********9765 PP

>> TIGR00202  csrA: carbon storage regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0036       2.1      12      35 ..     121     146 ..     115     149 .. 0.83
   2 ?    4.2   0.0     0.018        11      10      34 ..     218     242 ..     212     252 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0036
   TIGR00202  12 ivIgddievkvlsvk..gdqVklgve 35 
                 + +gd ++v++l v+  ++qV l+++
  MMETSP1174-20130828|2498_1 121 VSVGDTVHVRILRVDlaRNQVSLSMK 146
                 789*********99755999999875 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.018
   TIGR00202  10 EsivIgddievkvlsvkgdqVklgv 34 
                   i +g++i+v+v +v+ + + l++
  MMETSP1174-20130828|2498_1 218 SIISVGEQISVRVTGVEDGRISLSM 242
                 44789************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1223.90
//
Query:       MMETSP1174-20130828|2504_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|2512_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 279.51
//
Query:       MMETSP1174-20130828|2513_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 489.64
//
Query:       MMETSP1174-20130828|2515_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1984.09
//
Query:       MMETSP1174-20130828|2525_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.27
# Mc/sec: 1750.08
//
Query:       MMETSP1174-20130828|2526_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|2530_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|2539_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-09   33.2   1.9      8e-09   32.8   1.3    1.1  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   1.3   1.9e-12     8e-09      53     169 ..     131     251 ..     119     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.9e-12
   TIGR00747  53 slgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDl..sAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDR.gtcv...lFgDGagavvvges 169
                  l +  +kkAi++A+l+++di  ++v   +  ++ P   + + +++g+   +   l    +Ca  + ++ v+ +yv+s   k +Lv  +e  s  + ++D  + ++   +F+DG +a+v+g  
  MMETSP1174-20130828|2539_1 131 PLVTDVCKKAIKDAGLNVEDIGKLVVVSST-GFIGPGLDCHIIQEVGLSRGVDRALigFMGCAAAMNGFRVGMDYVRSH-EKAALVCCVEISSVHTTFDDNiNDAIlhaIFADGCAAAVLGGR 251
                 577889***************999887655.6789************9987644441157999999999********96.578999999999988877775333442337*********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1094.23
//
Query:       MMETSP1174-20130828|2543_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1965.69
//
Query:       MMETSP1174-20130828|2547_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.1   0.0      0.047   10.6   0.0    1.1  1  TIGR03069 PS_II_S4: photosystem II S4 domain protein


Domain annotation for each model (and alignments):
>> TIGR03069  PS_II_S4: photosystem II S4 domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.2e-05     0.047      12      84 ..      87     159 ..      82     168 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.2e-05
   TIGR03069  12 skeeleellelaeqalrtwevvwsdFlsaplveEilkrlekladlkllaeGGypeaeRqrlaiaredeeleed 84 
                 ++++++++l+  + al + ++  sd   a+  + ++++l+k +d ++ a  Gy+e e   l + ++  + +++
  MMETSP1174-20130828|2547_1  87 NHQSVSKVLDHQKLALAKHQAKGSDLRLAQYAKLMTETLSKSTDNHYEACAGYDEVEYLNLPVVKKAIHANAN 159
                 6899*****************************************************9999999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1412.77
//
Query:       MMETSP1174-20130828|2548_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|2553_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|2550_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|2556_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.7   2.3      0.057   11.1   1.6    1.3  1  TIGR00324 endA: tRNA intron endonuclease
        1.3    5.4   8.9        1.7    5.0   6.1    1.1  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR00324  endA: tRNA intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   2.8e-05     0.057       4      79 ..       8      88 ..       5     101 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   TIGR00324  4 rklkeDevivakkkeiseknlreeygnledesldlsliEs...lylldlgamf...lklkllkkDseplsleelvelaakyk 79
                r+ k+D++  +k+ +    + re  ++l++++ + ++iE+   ++l d++a +   +k +l ++ +e +++ e+ +l+ ++ 
  MMETSP1174-20130828|2556_1  8 RIAKKDVHALKKAIHRNTTKKRELEESLKKKEKTMQPIEArmlALLADIEAQSdakMKTRLARAEEE-ICMLEMAKLEYEQA 88
                66678888777776666788888999**************443345688876444499999999999.99998988877643 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.1   0.00084       1.7      67     194 ..       8     130 ..       4     134 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00084
   TIGR02231  67 eadseriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtleatedaeae 194
                 +++++ +++l+k+i++  +++++le   ++lkk+ k+++ i+ ++ +  +d  +e+++ +++k+ l+ ae+ei  l+ ++ e e+++  +e +l e e  l++l+ +   r + + +  ++ + + ++
  MMETSP1174-20130828|2556_1   8 RIAKKDVHALKKAIHRNTTKKRELE---ESLKKKEKTMQPIEARMLALLAD--IEAQSDAKMKTRLARAEEEICMLEMAKLEYEQAQVMQEGMLRERELALQKLQLQIHLRDRAIQMICTGAAGKGVD 130
                 77889999**********9999998...5799*******************..999999999********************9999999999999999999999998888888888777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|2561_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.8   0.3      0.062   11.2   0.2    1.8  1  TIGR02833 spore_III_AB: stage III sporulation protein AB


Domain annotation for each model (and alignments):
>> TIGR02833  spore_III_AB: stage III sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.5e-05     0.062      79     142 ..     171     233 ..     147     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
   TIGR02833  79 ekevetvkeafkkalkekkkktaLkkeekeillqlgktlGesdveeqqkhlrltlekLeaelae 142
                 + eve+++ea+++al++  +++  k +  ++l++ +k +G+   e+++k lr +l+kL ++ ++
  MMETSP1174-20130828|2561_1 171 RTEVEKAQEAYNAALNNFNDRSLRKVQGMDVLRN-AKNVGKAAKEGEEKRLRTALTKLGHARND 233
                 457899**********977777767788899988.899*******************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1640.44
//
Query:       MMETSP1174-20130828|2562_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|2565_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|2567_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|2570_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|2573_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|2577_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-16   56.7   0.0    5.4e-15   52.6   0.0    1.9  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    4.7e-16   56.7   0.0    6.5e-16   56.2   0.0    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.8e-09   32.4   0.0    5.5e-08   29.8   0.0    1.8  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.5e-06   24.3   0.1    5.1e-06   23.3   0.0    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
    0.00017   18.5   0.0    0.00026   18.0   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0014   15.4   0.0     0.0026   14.5   0.0    1.4  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0021   15.8   0.0     0.0035   15.0   0.0    1.3  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0092   12.9   0.0      0.014   12.3   0.0    1.2  1  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.013   11.8   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La
      0.017   11.5   0.0      0.026   10.9   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      0.053   10.9   0.0      0.089   10.1   0.0    1.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.4e-17   5.4e-15     472     669 ..      28     246 ..      20     279 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.4e-17
   TIGR01243 472 plkakevfeklg.irppkgvllfgppgtgktllakavatesganfiavrgpei.....ls.kwvgese..k.....aireifrkarqaapaiifldeid....aiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplae..dvdleelakktegytgadieavvreaa 669
                 pl   +v ekl      k +ll+gp gtgkt++  ava+e ga +i +    i     +s k  g ++  +     +i e + k     p+++++de +    a + ++g++  e    t r   +l++     ++ + ++ i+ t  p+  d   l+   +d+++ +p pd  +rl ++k  + + +l+e  + ++++la+ +e ++   ie+vv++  
  MMETSP1174-20130828|2577_1  28 PLGSARVKEKLLpHCDVKSILLYGPKGTGKTMMVEAVANEIGAMLINISPSRIkdladFSdKKTGPTKlmHliykiSIEEDLTKPNPNGPVVVYMDECEkffeASSGKKGKKGAEGgsGTVRFKKDLIAYKKTYQPLDRIIFIGNTTHPEKCDKKDLKA-FFDKFLHMPNPDYPSRLMMWKHFSETRALCElpNFEFNNLARISENFSAGSIETVVKKVL 246
                 6667777777541445799***************************9987666443333424455443212111113455567888899********75222267788888755433389999********************************9985.7********************98777777763377889*****************99743 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.7e-18   6.5e-16     133     337 ..      20     243 ..      13     266 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.7e-18
   TIGR01242 133 eireavelplkkpelfeevGie.ppkGvllyGppGtGktllakavaeetnatfirvvgsel......vkkyiGeGarlvrevfklake........kapsiifidei....daiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklae..dvdleelaklteGasGadlkaivt 337
                  i e  +lpl   ++ e++  +   k +llyGp GtGkt++  ava+e+ a +i++  s +        k  G  ++l++ ++k++ e          p ++++de     +a + k+ ++ + G     r   +l+a    ++p++ +  i+ t  ++  d   l+   fd+++ +p pd+  rl + k  +   +l e  + ++++la+++e +s   + ++v 
  MMETSP1174-20130828|2577_1  20 SITEYCVLPLGSARVKEKLLPHcDVKSILLYGPKGTGKTMMVEAVANEIGAMLINISPSRIkdladfSDKKTG-PTKLMHLIYKISIEedltkpnpNGPVVVYMDECekffEASSGKKGKKGAEGGSGTVRFKKDLIAYKKTYQPLDRIIFIGNTTHPEKCDKKDLKA-FFDKFLHMPNPDYPSRLMMWKHFSETRALCElpNFEFNNLARISENFSAGSIETVVK 243
                 57888999999999999876541579******************************99965221110444444.47999****99876333322224699******722225788999999999999999**********************************9985.7********************87666666543389999**********999998875 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.5e-10   5.5e-08      90     271 ..      45     244 ..      40     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.5e-10
   TIGR01241  90 kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvem..fv..GvGasrvrDlf.........eqakknaPciifiDeiD.....avGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla..eevdlkkvarrtpGfsGadlanlvne 271
                 k +ll+Gp GtGkt++  ava e g  +++is s   ++  f     G +++  l          ++   n P ++++De +     + G+k ++g  gg     +    l++    ++  + +i +  t  p+  Dk  l+   fD+ + + +Pd+  r  + k  ++   l   ++++ +++ar    fs   ++ +v  
  MMETSP1174-20130828|2577_1  45 KSILLYGPKGTGKTMMVEAVANEIGAMLINISPSRIKDLadFSdkKTGPTKLMHLIykisieedlTKPNPNGPVVVYMDECEkffeaSSGKKGKKGAEGGSGT-VRFKKDLIAYKKTYQPLDRIIFIGNTTHPEKCDKKDLKA-FFDKFLHMPNPDYPSRLMMWKHFSETRALCelPNFEFNNLARISENFSAGSIETVVKK 244
                 789******************************976665223211355555555431111111115667899********97333334577777776666554.456689******************************995.7********************99999999855688889***********999999864 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08   5.1e-06     217     303 ..      45     130 ..      36     137 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
   TIGR03689 217 kGvllyGPPGcGktliakavanslaekvaedgeaksyflnikG.PellnkyvGeterqirlif....erarekaaegrPvvvffdemdslfr 303
                 k +llyGP G+Gkt++  avan +++   + +   s    ik   ++ +k  G t   + li+    e    k + + Pvvv++de + +f 
  MMETSP1174-20130828|2577_1  45 KSILLYGPKGTGKTMMVEAVANEIGAMLINIS--PS---RIKDlADFSDKKTGPTK-LMHLIYkisiEEDLTKPNPNGPVVVYMDECEKFFE 130
                 88**********************99887622..22...22221355566666653.44555500014444556677889999999888875 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     7e-07   0.00026      22      72 ..      31      86 ..      18      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7e-07
   TIGR00635 22 aakkrkealdh.....vllyGPPGlGkttlakiiakelgvklkitsgpalekpgDl 72
                +a+ +++ l h     +llyGP G Gkt + + +a+e+g+ l  +s   ++   D+
  MMETSP1174-20130828|2577_1 31 SARVKEKLLPHcdvksILLYGPKGTGKTMMVEAVANEIGAMLINISPSRIKDLADF 86
                55555555555333337***********************9998888887766665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     7e-06    0.0026      41      65 ..      45      69 ..      36      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7e-06
   TIGR02928 41 snvliyGktGtGKtavtkkvlkele 65
                +++l+yG+ GtGKt+++++v +e+ 
  MMETSP1174-20130828|2577_1 45 KSILLYGPKGTGKTMMVEAVANEIG 69
                68******************99985 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.4e-06    0.0035      10      55 ..      33      77 ..      29      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.4e-06
   TIGR00150 10 klgkklakaldlatvvlLkGdlGaGKttlvkgllkglGiqgevkSP 55
                ++ +kl+ ++d++  +lL+G  G+GKt +v ++++++G      SP
  MMETSP1174-20130828|2577_1 33 RVKEKLLPHCDVKS-ILLYGPKGTGKTMMVEAVANEIGAMLINISP 77
                56788999999776.579********************98877777 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.8e-05     0.014     135     161 ..      42      68 ..      31      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
   TIGR00362 135 kaynPlfiyGgvGlGKTHLlqAignei 161
                  +++ +++yG  G GKT +++A++nei
  MMETSP1174-20130828|2577_1  42 CDVKSILLYGPKGTGKTMMVEAVANEI 68 
                 567889*******************98 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.5e-05     0.013     346     395 ..      37      86 ..      13     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.5e-05
   TIGR00763 346 klrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaei 395
                 kl  + + k + l+GP G GKt + +++A+ ++  ++ +s   +kD a+ 
  MMETSP1174-20130828|2577_1  37 KLLPHCDVKSILLYGPKGTGKTMMVEAVANEIGAMLINISPSRIKDLADF 86 
                 66677788899*****************************9999999885 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     7e-05     0.026     311     339 ..      43      71 ..      26      84 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7e-05
   TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGl 339
                   k +ll GP GtGkt + ++va+ +  +
  MMETSP1174-20130828|2577_1  43 DVKSILLYGPKGTGKTMMVEAVANEIGAM 71 
                 567899*****************987655 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00024     0.089      35      64 ..      41      70 ..      29      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00024
   TIGR03420 35 akaerllylwGesgsGksHLLqAacaaaee 64
                + + +++ l+G++g+Gk+ +++A+++++ +
  MMETSP1174-20130828|2577_1 41 HCDVKSILLYGPKGTGKTMMVEAVANEIGA 70
                56678899****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.50
# Mc/sec: 868.49
//
Query:       MMETSP1174-20130828|2579_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-11   40.8   0.0    4.1e-11   40.5   0.0    1.0  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    5.5e-05   20.7   0.0     0.0011   16.5   0.0    2.1  2  TIGR03045 PS_II_C550: cytochrome c-550
    0.00081   16.9   0.4      0.007   13.9   0.3    2.2  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0     3e-14   4.1e-11     191     282 ..      48     140 ..      23     143 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 3e-14
   TIGR00782 191 slsskkpkdealaakGkelFadnCvsChgedgkGlqelgapnltddvwly..Ggd.kktivttikkGrigvmPawkkrlseaqikalaayvhslg 282
                  ls+ +p+ +  +++G  +F++nC++Ch+   + + + +     d++  y  Gg   +++v ++++G+   mPa++ rls+++i+ +aayv+  +
  MMETSP1174-20130828|2579_1  48 LLSGSAPALAGDVDAGGLIFSANCAACHAGGNNVIAAEK-TLKKDALVSYlsGGFkPESVVYQVTNGKN-AMPAFGGRLSDEEIEDVAAYVFDQA 140
                 34557888888999**************98766666555.333567777754443499*********96.6********************8755 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.8e-07    0.0011      49      84 ..      58      93 ..       3      97 .. 0.78
   2 ?    2.4   0.0     0.017        23     131     155 ..     123     145 ..     111     146 .] 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.8e-07
   TIGR03045 49 eqvkkgkrlfnsaCatChvgGitktnpnvgLdleaL 84
                 +v++g  +f ++Ca+Ch+gG      + +L+ +aL
  MMETSP1174-20130828|2579_1 58 GDVDAGGLIFSANCAACHAGGNNVIAAEKTLKKDAL 93
                47899999*************999999999988887 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.017
   TIGR03045 131 nLtdedLkliagyiLvqpkvvgekW 155
                  L+de+++ +a+y+  q+  +g+kW
  MMETSP1174-20130828|2579_1 123 RLSDEEIEDVAAYVFDQA--SGDKW 145
                 599**********98765..45555 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   5.1e-06     0.007      55      85 ..      58      88 ..      51     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.1e-06
   TIGR03046 55 edlteGkklfesncknchvGGatlpnPkvsl 85
                 d+ +G   f  nc  ch GG ++ + + +l
  MMETSP1174-20130828|2579_1 58 GDVDAGGLIFSANCAACHAGGNNVIAAEKTL 88
                57889999***************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1174-20130828|2583_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 627.75
//
Query:       MMETSP1174-20130828|2587_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1174-20130828|2586_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-101  337.2   0.3   2.3e-101  336.9   0.2    1.0  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    7.6e-62  207.1   0.2    9.4e-62  206.8   0.1    1.1  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.9   0.2  1.1e-104  2.3e-101       7     320 ..     109     430 ..     104     432 .] 0.95

  Alignments for each domain:
  == domain 1    score: 336.9 bits;  conditional E-value: 1.1e-104
   TIGR02749   7 lapvekdlealtknlkslvGakhPilsaaaehlfea.gGkrlrPaivllvsrataeeeelt.....arhrrlaeitelihtaslvhddvvdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavls..evdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslevlpksaskealkelvefvler 320
                 +++v+ +le +++n+k+lv  +hP+ls aa+h+fe   Gkr+rP+iv+l+++a+a + e t     +++ +l++ite+ih asl+hddv+de+d+rrg e+vh+ + ++vavl+Gd+l+a+as  +a+l+++evv++++  +  + +Gei q  +  +  l++  yl ksyyktasl+  ++++ a+l   e++s+v+ +  ++G hlGla+q+vddildft s+++lGkPa +d+  G  taPvl+a ee  +l+ +i+r+f e++d+eka +lv++s++i++a  la  +aq a+++l+ lp+s +++al  l+e v++r
  MMETSP1174-20130828|2586_1 109 FKLVAAELEPFSDNIKDLVENDHPVLSKAAKHFFEQrHGKRFRPTIVMLMAKAVAGTVENTdtpeyQKQAQLGQITEMIHVASLIHDDVLDEADTRRGGEAVHKMYSNKVAVLSGDYLLARASVLMAKLGDIEVVQIMASALDALVQGEIMQIKSAPEDTLEMGYYLRKSYYKTASLICDACQSCAILGghELESDVTVAAEKFGYHLGLAYQIVDDILDFTVSSDNLGKPAMADVSLGLATAPVLYAAEEFRELRPMIKRRFGEPGDIEKASKLVHSSDGIRRAELLAIFHAQSAVDALQKLPPSEARSALVRLTEIVITR 430
                 789*******************************8637**************9876554432222257889*********************************************************************************************************************6337889999999***********************************************************************************************************************99 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.1   4.6e-65   9.4e-62      11     318 ..     114     431 ..     107     432 .] 0.87

  Alignments for each domain:
  == domain 1    score: 206.8 bits;  conditional E-value: 4.6e-65
   TIGR02748  11 edieviekelekavqaeaevlkeaalellk.aGGkrirPvfvllagklg.....dydldkl.k..kvavalelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivagad..eeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkklekvleettaeeleelieevkksdaiekalavsdlylkkalelldelPkseakkalkeiakyigkrk 318
                  ++e    ++++ v+ +++vl++aa ++++   Gkr rP +v+l +k       + d  +  k  ++    e+ih+asl+hddv+d+a+ rrG e+++  ++n++a+ +Gdylla++   ++++ d +v +i+++++  + +Gei qik   +   ++  ylr+   kta li  +cq  ai +g +  ++ + +  +fgy++G++yqi+ddildf+ ++++lGkPa  d+  G  t Pvlya e+ + l+  +++ + e    ++e+  + v++sd+i +a+ ++  + + a+++l++lP sea++al  +++++  rk
  MMETSP1174-20130828|2586_1 114 AELEPFSDNIKDLVENDHPVLSKAAKHFFEqRHGKRFRPTIVMLMAKAVagtveNTDTPEYqKqaQLGQITEMIHVASLIHDDVLDEADTRRGGEAVHKMYSNKVAVLSGDYLLARASVLMAKLGDIEVVQIMASALDALVQGEIMQIKSAPEDTLEMGYYLRKSYYKTASLICDACQSCAILGGHEleSDVTVAAEKFGYHLGLAYQIVDDILDFTVSSDNLGKPAMADVSLGLATAPVLYAAEEFReLRPMIKRRFGE--PGDIEKASKLVHSSDGIRRAELLAIFHAQSAVDALQKLPPSEARSALVRLTEIVITRK 431
                 56777788999****************996258*********99776531122255543331311455678*****************************************************************************************************************98621455667789**********************************************9976577777776665..467888888999************************************9999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1357.60
//
Query:       MMETSP1174-20130828|2590_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|2591_1  [L=1170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.56
# Mc/sec: 2709.25
//
Query:       MMETSP1174-20130828|2595_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 633.55
//
Query:       MMETSP1174-20130828|2596_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-82  275.9   0.2    2.4e-82  274.9   0.0    1.5  2  TIGR00583 mre11: DNA repair protein (mre11)


Domain annotation for each model (and alignments):
>> TIGR00583  mre11: DNA repair protein (mre11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.9   0.0   5.8e-86   2.4e-82     113     405 .]       2     303 ..       1     303 [. 0.86
   2 ?   -2.5   0.2     0.096   3.9e+02     295     366 ..     338     410 ..     334     427 .. 0.56

  Alignments for each domain:
  == domain 1    score: 274.9 bits;  conditional E-value: 5.8e-86
   TIGR00583 113 vfsihGnhddasGdg...rlsaldllqatGlvnyfGkvseadeikvsPillqkGetklalyGlsavrderlvrtfkdnkvkflrPnl..kkedwfnllvlhqnhaaht.stsflpesllpdfldlviwGheheclidpvynpskgfevlqPGssvatslvpeealpkhvfilnikGrkfklekiplktvrpfvmkeivldev.kslrp..llktenkkevskrliekveekieeanaeakakra....ddevdeeeepplPlirlkvdytadwldyqvenpkrfsnrfvgrvanandvvqfkkkkk 405
                 vfsihGnhdd++ +g    l+aldll ++ l+nyfGk  + d++ ++Pil+ kGetklalyGl+++rderl r +   kv+flrP+    ++ +fn+lvlhqn+a  + + + + es++p+++d+v+wGhehec id +   + +f v+qPGs+vatsl+++ea+pkhv++l+++ ++f++++i+l+ vr+f + e+ ld+   +l p  ++ +e+ +++ + ++ ++ ++ +   +e+  + +    ++     +ep + l+rlkvd ++    + + n++rf+ rfvg++an ++++ ++k++k
  MMETSP1174-20130828|2596_1   2 VFSIHGNHDDPTREGgieALAALDLLATANLINYFGKQDQVDNVCIKPILVDKGETKLALYGLGNIRDERLNRMWTRKKVTFLRPSEadGRDSFFNILVLHQNRAEGRgRKNAVWESMIPEWFDIVVWGHEHECRIDFQESLHGHFRVMQPGSTVATSLIDGEAQPKHVGLLELRNQQFRMQPIRLRNVRAFATGEVRLDDEeFGLDPedVKVDEKVDAILEEFVRNLADQARRERTEMLSQPGgvtsEGGRYSLTEPGQVLVRLKVDRHG----FPSLNSQRFGARFVGEIANPSEILLLHKRRK 303
                 9*********98665333799****************************************************************86225899***********76651669***************************************************************************************998556776213334555778888888885544433333333322241144455678999*********999....8899**********************99986 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.096
   TIGR00583 295 vrpfvmkeivldevkslrpllktenkkevskrliekveekieeanaeakakra..ddevdeeeepplPlirlkv 366
                 v  +v++++  +++k+lr l++++ k+++++++ ++  ++i++ ++ + ++     + ++ ++  +l li   v
  MMETSP1174-20130828|2596_1 338 VEDLVTEQL-QQSDKKLRLLKESDLKDALEEYVKKHYANAIDDLVSLTLDETQkrLSAAQYSHATNLALIHEAV 410
                 555555554.3556777877777777777766666667777776544332221112333444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 1835.57
//
Query:       MMETSP1174-20130828|2598_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|2599_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|2610_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|2611_1  [L=1046]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.18s 00:00:00.85 Elapsed: 00:00:00.85
# Mc/sec: 1624.24
//
Query:       MMETSP1174-20130828|2618_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 477.19
//
Query:       MMETSP1174-20130828|2619_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|2616_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 333.85
//
Query:       MMETSP1174-20130828|2620_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 222.13
//
Query:       MMETSP1174-20130828|2625_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|2626_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|2629_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|2630_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 1604.99
//
Query:       MMETSP1174-20130828|2632_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1174-20130828|2631_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.50
# Mc/sec: 1259.18
//
Query:       MMETSP1174-20130828|2635_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|2637_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|2651_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 167.52
//
Query:       MMETSP1174-20130828|2655_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|2644_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-55  184.0   0.0    9.2e-40  134.6   0.0    3.7  2  TIGR00184 purA: adenylosuccinate synthase


Domain annotation for each model (and alignments):
>> TIGR00184  purA: adenylosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   2.2e-43   9.2e-40       2     276 ..     124     427 ..     123     447 .. 0.77
   2 !   39.1   0.0   2.2e-14   8.8e-11     283     423 ..     490     656 ..     474     658 .] 0.71

  Alignments for each domain:
  == domain 1    score: 134.6 bits;  conditional E-value: 2.2e-43
   TIGR00184   2 vvGtqWGDeGkGkivdlla..dkakivaRyqgGnnaGhtiv.idGekyklrliPsGllykdaklligngvvvdpeallk.eleelekrlvsvrerllvseraalildyhkklDkareksklakkiGttgkGiGPayedkvaRsGlrvgdlldkeaiaek.lkevlekk.......leqlkk.aykde.evdyekkldeylklaee....l...kefvv.........DvsvllnealeegekvlleGaqgllLdidyGt.YPyvtssnttaggvatgvGlgPrkvde.vigvvkaytt.RvGeGPFpt 276
                 v G+ +GDeGkGk vd +a   ++k+vaR+++G+naGht+   +G+ky ++l PsGll + + ++ig   v+dp +++k e+ +l +++v  ++rl++ +  +l+ ++hk +D + + s       +t +G+ P +  k++R+G+r+++l+++   a+k l++ +  +       + +  + +yk++ + + +k++ +++  +++    l    e vv         Dvs+ll + +e+gekvlleG q+  L+      +   ts nt+a+g+++ + l+ ++++  v+ + k+  t RvG+G  p 
  MMETSP1174-20130828|2644_1 124 VPGAYFGDEGKGKTVDAIArhPDVKVVARVNSGENAGHTVIgENGVKYAFHLCPSGLLTPGKINVIGPECVMDPVSFMKrEIGQLIETGVPYKDRLFIGD-VHLVCPHHKLQDLMGSWS---APNASTLQGMAPIHGSKAQRKGIRLDHLFNDRVNARKrLEADMVAYygmlkvlNITEDQlYYKAKqNNKIQKHVIDFILAKDKagyvLdlyDEHVVnnpefpprrDVSHLLRKTIESGEKVLLEGPQSYWLSNAAEKfWDSGTSANTGASGMLAASQLNVTNLNPlVVNIHKTPGTsRVGAGANPC 427
                 56999**************6667899*************87368*********************************9769*****************87.7************99944...3557999************************9866551443332221111111333334245544145577777665544333111111112333233334444499************************98766515789*********************97367899997544*****8876 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 2.2e-14
   TIGR00184 283 geklrkkgaefGtvtgRrRRvGwlDlvvvrkavalngitqlaltklDvldgldeikvcvaykl...kGekl.......el.........fpedlkalkevepiyetlpGwekeitkvke.........ledLpenakkyikkieelvgvpveiistgPereetivlrke 423
                 +  ++   +efG++ gR+R vG++D v+  + +  +g    ++   D+ d  de  vcvay +   +G+ +       e          +p+++ +l++++pi +++ Gw +    +++         l++Lp+ + + i+ ie+++g +v  i+ gP+ +++i ++k+
  MMETSP1174-20130828|2644_1 490 ASCIHPSHQEFGVTSGRPRVVGFFDCVAQAELISAQG-PYCSISAFDRGDDYDEYGVCVAYVYshpEGRSMvsngrtfESgciiragdpLPTQA-ILENCQPIIKKVSGWRDTPIYARSdwwktqnhpLKELPKPVCELIDIIEHFTGTKVISIGNGPKGDDIIYIKKQ 656
                 555677789****************998655555444.356799****************9654344554312111113222222221134444.89*************875333322121112233789********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.53
# Mc/sec: 1638.66
//
Query:       MMETSP1174-20130828|2649_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-147  486.8   0.0   8.8e-147  486.6   0.0    1.0  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    3.4e-95  316.8   0.0    4.1e-95  316.5   0.0    1.0  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    3.5e-87  290.6   0.0    4.3e-87  290.3   0.0    1.0  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
    9.1e-81  269.2   0.0    1.1e-80  268.9   0.0    1.0  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    6.2e-73  243.7   0.0    2.8e-44  149.3   0.0    2.0  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    4.1e-53  178.3   0.0    5.4e-53  177.9   0.0    1.0  1  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    3.3e-08   31.1   0.0    4.7e-08   30.5   0.0    1.2  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    0.00052   16.8   0.0    0.00081   16.2   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
      0.003   14.3   0.0     0.0052   13.5   0.0    1.3  1  TIGR01141 hisC: histidinol-phosphate transaminase


Domain annotation for each model (and alignments):
>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.6   0.0  1.9e-149  8.8e-147       2     379 ..      47     427 ..      46     430 .. 0.95

  Alignments for each domain:
  == domain 1    score: 486.6 bits;  conditional E-value: 1.9e-149
   TIGR01329   2 stevvnlds.kndqysassmPiyqsatfkqdlaeedgeydysrsGnPtrtalesllaklekaeralavssGmaaldvivrllkagdeiiagddlyGGtdrlltqlksksgvvvvhvdttdlek...vkavlgdlpktklvllesPtnPlikivdirkiaeaakalnedalvvvdntmlspllcnPlelGadivlesatkylaGhsdvmaGvlavkseeiakklyflinseGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlksepdfklhksqakGaGavlsfetGsvalskrlveaak...lfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaalv 379
                 +t++v  +  k d++ a++mPiyq+atf q++a+e+g +dy+rsGnPtr+a e+ la+l++   a+++s+Gmaa+ +++r  +agdeii++dd yGGt rll+q++s++gv + +vd +  e    + a+l+  p+t+lv+lesPtnP+++i d+r+ia+++k++   al++vdnt+lspll +Pl+lGad+v+ s+tk+ +Ghsd+maGv+ vk++e+ak++yf +n+eG+glaPfd+wlllrG+kt+ +rle+ q na+++a fl++++rv+  v yaGl+++pd  lh sq++G+G v+ f tGs a+s ++v+ a    lf+itvsfGsvnslis+P  +shasi+a+v+ +r++p dl+rls+Gied  dlik l  al 
  MMETSP1174-20130828|2649_1  47 ETRIVSYNPaKDDPHGAATMPIYQTATFAQKSASEFGAFDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAIMAVTRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGPEGpavLSAALT--PQTALVMLESPTNPMMRICDVRAIARIVKSHP-RALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVVSVKDPELAKQVYFYQNAEGTGLAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVT-SVLYAGLPDHPDKALHDSQTSGSGVVVCFRTGSYANSLHVVDQASgsgLFKITVSFGSVNSLISLPGDMSHASIPADVKSAREFPTDLIRLSIGIEDAGDLIKVLGSALD 427
                 6888888766999**********************************************************************************************************9985222456666..*****************************998.9*******************************************************************************************************876.9****************************************87542238*******************************************************999986 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.5   0.0   9.1e-98   4.1e-95      14     380 ..      56     427 ..      45     429 .. 0.93

  Alignments for each domain:
  == domain 1    score: 316.5 bits;  conditional E-value: 9.1e-98
   TIGR02080  14 esdkqygavvpPiylsttyefagfnepraydysrsgnPtrdllekalaelekGadavvtssGmsaiellviallkpddllvaPhdcyGGtyrllkalakkgklkvqlvdqsdee...alekalaekpklvlietPsnPllrvvdiaklcklakaa.gavvvvdntflsPilqkPlalGadlvlhsatkylnGhsdviaGaviakdkqlaeelawwanalGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaakqqkGfGallsfelkGgeeevkkflkk...lklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqala 380
                 ++d+ +ga   Piy ++t++ ++  e  a+dy+rsgnPtr+  e+ lael++G +a   s+Gm+ai  ++  + +++d +++  d yGGtyrll++ a++  +k  +vd s  e    l++al+ +++lv++e+P+nP++r+ d+++++++ k++  a+  vdnt+lsP+l +Pl lGad+v+ s+tk+  Ghsd +aG+v  kd++la+++ ++ na G+  a+fd++lllrGl+t+  r+++ + na++++++lq++p v +v y+glpdh++ ++   q +G G ++ f      ++  + +++     lf ++ s+G v+sli+ p  m+ha++  + +++      l+rls+G+eda dli+ l +al 
  MMETSP1174-20130828|2649_1  56 AKDDPHGAATMPIYQTATFAQKSASEFGAFDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAIMAVT-RFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGPEgpaVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHpRALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVVSVKDPELAKQVYFYQNAEGTGLAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVTSVLYAGLPDHPDKALHDSQTSGSGVVVCFRTGSYANS-LHVVDQasgSGLFKITVSFGSVNSLISLPGDMSHASIPADVKSAREFPTDLIRLSIGIEDAGDLIKVLGSALD 427
                 68999*************************************************************9888.999**********************************98765422279*******************************9887626899************************************************************************************************************************************96544444.44444401157*******************************************************9999886 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.3   0.0   9.5e-90   4.3e-87       4     390 ..      46     428 ..      43     429 .. 0.93

  Alignments for each domain:
  == domain 1    score: 290.3 bits;  conditional E-value: 9.5e-90
   TIGR01328   4 fetraihagykpkdefgaltppiyqtstfvfesaeqGGnrfaGeeeGyvysrlgnptvdllerriaelegaeaavatasGmgaiaatllsllkagdevisdetlyGctfalledaltkfgidvkfvdmaspe...evkaaikdntkivyfetpanptlklidleavvrvakekg.vkvivdntfatplltrpvalGvdvvvhsatkyigGhgdvvaGvliGda.ellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaakqmkkgGgllafelkggeadaakllnrlk...lirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqalea 390
                  etr +  +  ++d +ga+t piyqt+tf+ +sa + G         + y+r gnpt +  e+ +ael+ +  a  +++Gm+ai a+   + +agde+i+++  yG t+ ll +   + g++ ++vd++ pe    + aa+ ++t +v +e+p np +++ d+ a++r+ k++  +++ vdnt  +pll +p++lG+d+vv s tk+  Gh+d +aGv+  +  el +++      + tG  ++pfd +l+lrGlkt+ +r++r   na++va +l++hp+v  vly Gl +h+d+ +   q   +G +++f   g++a++ +++++     l +++vs+G +++li  p  m+ha +p + ++a     +l+rls+G+ed+ d++  l  al++
  MMETSP1174-20130828|2649_1  46 IETRIVSYNPAKDDPHGAATMPIYQTATFAQKSASEFG--------AFDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAIMAV-TRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGPEgpaVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHPrALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVVSVKDpELAKQVYFYQNAEGTG--LAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVTSVLYAGLPDHPDKALHDSQTSGSGVVVCFRT-GSYANSLHVVDQASgsgLFKITVSFGSVNSLISLPGDMSHASIPADVKSAREFPTDLIRLSIGIEDAGDLIKVLGSALDS 428
                 689999999889999**************998876655........477***********************************995.78*************************************998773336899*********************************9879999***************************************9776615556676666666666..**********************************************************************85.78999999**99754459******************************************************99999985 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.9   0.0   2.4e-83   1.1e-80      28     379 ..      68     425 ..      63     426 .. 0.94

  Alignments for each domain:
  == domain 1    score: 268.9 bits;  conditional E-value: 2.4e-83
   TIGR01325  28 vydsaaeaekrfagevkgfvysryanPtvkvfeerlalleGaeaavatasGmaailaallallsaGdhvvasrslfGstvvlvseilkrfGvevsfvdatd...lkaWeaalkantkllfletPsnPlaelvdiaalaelahav.GaklvvdnvfatPvlqqplklGadvvvysatkaidGqGrvlGGvilg.seelieevakllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaelakrqqsGgGtvvafdlkgreaafkvldale...lvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkra 379
                 +y++a  a+k+ a e   f y+r +nPt ++ e+ la l+    a+  ++Gmaai+a ++ + +aGd++++s   +G t  l+s++ +r Gv++s+vd +    ++   aal ++t l++le+P+nP+  + d++a+a +  +   a+l vdn++++P+l qpl+lGad vv s+tk   G+  ++ Gv+   + el ++v  + +  G  l+pf+ W+ll+Gl t+ lr+++ + +a+++a fl+++p+v  v+yaglPdhP++ l   q sG G+vv+f   + + + +v+d+     l++i+  +G + sli+ P   +h +++ + ++a +    l+rls+G+ed +dl++ l  a
  MMETSP1174-20130828|2649_1  68 IYQTATFAQKS-ASEFGAFDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAIMA-VTRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGpegPAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHpRALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVVSVkDPELAKQVYFYQNAEGTGLAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVTSVLYAGLPDHPDKALHDSQTSGSGVVVCFRTGSYANSLHVVDQASgsgLFKITVSFGSVNSLISLPGDMSHASIPADVKSAREFPTDLIRLSIGIEDAGDLIKVLGSA 425
                 68888888765.889****************************************97.789*************************************87611156799*******************************98863699*****************************************97615688888***********************************************************************************99*********864444******************************************************987766 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   6.2e-47   2.8e-44       3     216 ..      47     255 ..      45     267 .. 0.89
   2 !   92.6   0.0   9.9e-30   4.5e-27     266     417 ..     274     426 ..     263     427 .. 0.91

  Alignments for each domain:
  == domain 1    score: 149.3 bits;  conditional E-value: 6.2e-47
   TIGR01326   3 etlalhagqepdpttksravPiyattsyvfdsaehaaalfgLeelGniYsrlmnPttdvlekriaalegGvaalavasGqaaillallnlaeaGdnivsssklYGGtynlfkvtlkrlGievrfvdkdd...leelekaidentkavfletignPkldvlDiekvaevakka.gvplivDntvatpylvrPlehGadivvhsatkylgGhgtaigGvi 216
                 et+ +     +d  + + ++Piy+t++++ +sa +    fg       Y+r  nPt  + e+ +a l++Gv a++++ G+aai +a++  a+aGd+i+ s   YGGty l+++   r G+++++vd +    +  l++a+ ++t  v le+ +nP++++ D+ ++a++ k++    l vDnt+ +p l++Pl+ Gad vv s tk+  Gh+ +++Gv+
  MMETSP1174-20130828|2649_1  47 ETRIVSYNPAKDDPHGAATMPIYQTATFAQKSASE----FGA----FDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAI-MAVTRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGpegPAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHpRALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVV 255
                 66666666677888999***********8776654....432....239*******************************996.69***************************************97662246689***********************************9455566**************************************97 PP

  == domain 2    score: 92.6 bits;  conditional E-value: 9.9e-30
   TIGR01326 266 GaalsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkkvnypgLasssehelakkylekgagavlsfevkggkeaakkfidalk...LasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                 G+ l+Pf+++lll+Gl+t+ lrler + na++va fL++hp+v++v y+gL+++++++l +  +  g g v+ f   g ++++ +++d+     L++  +  g + sl+  P    h  +  + + +    +dlirls+Gie++ D+i+ l  al
  MMETSP1174-20130828|2649_1 274 GTGLAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVTSVLYAGLPDHPDKALHDSQT-SGSGVVVCFRT-GSYANSLHVVDQASgsgLFKITVSFGSVNSLISLPGDMSHASIPADVKSAREFPTDLIRLSIGIEDAGDLIKVLGSAL 426
                 899******************************************************9988765.899******96.556666778887644449*****************************************************9998887 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9   0.0   1.2e-55   5.4e-53      35     370 ..      78     422 ..      50     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 177.9 bits;  conditional E-value: 1.2e-55
   TIGR01324  35 sarakdkltyGirGtsttvalqdalaeleGaagvilyPsGlaavtnallafvkaGdevlvvdsaykPtrrfcdivlkrlgveveyyd...PkigediaalikpntkvvfleaPasltlevqdiPaiakaar.aagvvvlidntwaagllfkalehgvdisiqaatkylaGhsdvllGtvaanesave.kllealyllGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghelfkrdfsGssGlfsvvl.krlsqkevhafldalklfglgyswGGyesla.lnvqpela...irrsikrdleGplirlhiGledvddlkadl 370
                 sa + + + y + G +t+ a +++lael+ + g++ + +G+aa+  a+  f +aGde++ +d  y  t r+  +v  r gv++ y d   P+  + + a ++p+t +v+le+P+   + + d+ aia++ +  + +++ +dnt  ++ll+++l+ g d+ + + tk+ +Ghsd + G v+  + +++ +++      G+   + d + +lrGl+t+  rl+r q +a+++a +l+ ++ v+ vl+  lP +p+++l+    sGs  +  +     + + +v        lf ++ s+G  +sl+ l+ ++  a     ++  r++   lirl iG+ed  dl+  l
  MMETSP1174-20130828|2649_1  78 SASEFGAFDYTRSGNPTRSAAENILAELDHGVGAFCFSTGMAAIM-AVTRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDlsgPEGPAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKsHPRALLSVDNTLLSPLLMQPLDLGADFVVTSCTKFACGHSDTMAGVVSVKDPELAkQVYFYQNAEGTGLAPFDCWLLLRGLKTMPLRLERGQSNAMQVAAFLQSHPRVTSVLYAGLPDHPDKALHDSQTSGSGVVVCFRTgSYANSLHVVDQASGSGLFKITVSFGSVNSLIsLPGDMSHAsipADVKSAREFPTDLIRLSIGIEDAGDLIKVL 422
                 233446788**********************************95.7899************************************95555555778999****************************99978899**********************************************988761566777888***************************************************************99998777666533333444444455567*************98577777644311445556788899*************98765 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     1e-10   4.7e-08      97     235 ..     122     257 ..      73     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1e-10
   TIGR01976  97 ralartlgpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaa.GalvvvDavhyaphaliDvqalgaDllvcsaykffgPhlGilvvrael 235
                  a++r ++ gdE+i ++    +  +   q a +ag+k  ++++  ++g   +a l a l ++T LV + + +n +  i d++a++++v++   al+ vD     p  l+   +lgaD++v s  kf   h  ++ +   +
  MMETSP1174-20130828|2649_1 122 MAVTRFAQAGDEIICSDDSYGGTYRLLSQVASRAGVKTSYVDLSGPEG---PAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHpRALLSVDNTLLSPL-LMQPLDLGADFVVTSCTKFACGHSDTMAGVVSV 257
                 4788999*********98888888999999999999988888887776...899**********************************9863699*****999986.566679*************99997666555444 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06   0.00081      78     170 ..     116     208 ..      87     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.8e-06
   TIGR03947  78 sseaiylvltallrPGdevvvvd....payhslselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellel 170
                 ++ a ++++t   + Gde++  d    ++y+ ls++a  +g+k+    l+        ++ l a +t++t+lv++  P nP  +  d r  + +++ 
  MMETSP1174-20130828|2649_1 116 TGMAAIMAVTRFAQAGDEIICSDdsygGTYRLLSQVASRAGVKTSYVDLSG----PEGPAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKS 208
                 5667788999999********983333467899**********99999984....44578899*******************999999999988875 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-05    0.0052      89     180 ..     124     217 ..     112     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
   TIGR01141  89 iraflepgdavlvleptys.mYevsakiagaevkevplked.gqedleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvD 180
                 +  f++ gd+++ ++ +y   Y++ +++a+   +++++ +  g e  + +++a + ++ lv l sP nP   + + + i +++++  +al  vD
  MMETSP1174-20130828|2649_1 124 VTRFAQAGDEIICSDDSYGgTYRLLSQVASRAGVKTSYVDLsGPEGPAVLSAALTPQTALVMLESPTNPMMRICDVRAIARIVKSHPRALLSVD 217
                 5678999***********548999999999888888877774666777777799**************************99999767777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|2659_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 443.96
//
Query:       MMETSP1174-20130828|2661_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-95  314.1   0.0    1.3e-47  158.9   0.0    2.1  2  TIGR00068 glyox_I: lactoylglutathione lyase
    2.6e-06   24.8   0.4       0.55    7.3   0.0    4.0  4  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase
    0.00012   19.5   0.7       0.47    7.7   0.0    3.9  4  TIGR03213 23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
    0.00074   17.9   0.0        5.3    5.5   0.0    3.8  4  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase
     0.0061   13.6   0.3        6.4    3.7   0.0    3.8  4  TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   9.3e-49   7.6e-46      11     141 ..       8     166 ..       2     172 .. 0.95
   2 !  158.9   0.0   1.5e-50   1.3e-47      12     143 ..     221     382 ..     213     387 .. 0.95

  Alignments for each domain:
  == domain 1    score: 153.1 bits;  conditional E-value: 9.3e-49
   TIGR00068  11 eatkkylllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa..................avieLtynwgtek.....ydlGn.......gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellek 141
                 + t ky++++tmlr++++++sldfy +vlGm+l+ ++df ++ fsl+f+gy ++  +                    ieLt+n++tek     y++Gn       gfGhi+i+ +dvy acer+k++G+ + + p    gg++++af+ DPDGy ie++ +
  MMETSP1174-20130828|2661_1   8 KDTSKYVMQQTMLRIKEPKRSLDFYINVLGMELIEHMDFASYGFSLYFVGYLPTGMTradmppidqrhhfaatlpGLIELTHNHNTEKeegpsYHVGNnydgcngGFGHIGITLPDVYTACERFKELGVSFKKSP--NSGGMRGLAFIYDPDGYAIEIICQ 166
                 56899***********************************************99888899************99999**********99*******99999999***************************9988..9********************965 PP

  == domain 2    score: 158.9 bits;  conditional E-value: 1.5e-50
   TIGR00068  12 atkkylllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa....................avieLtynwgtek.....ydlGn.......gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekkk 143
                 +t+++++++tm+r++d++ sl fy +vlGm+l+++ dfp++ fsl f+gy ++  +                    a++eLt+n+g e      y++Gn       gfGh++i+v++vy+ac+r++++G+++ + p   +gg+k++af+kDPDGy+ie++ +  
  MMETSP1174-20130828|2661_1 221 ETRGWVMQQTMVRIRDPQVSLPFYRDVLGMTLIKRLDFPQYGFSLFFMGYLPKGMTadelppegssertdflwnlpATMELTHNHGSEAqegplYHTGNsydnvkgGFGHVGITVPNVYDACDRFHELGVEFKKSP--NQGGMKGLAFIKDPDGYWIEIISQAP 382
                 578999********************************************999877789*****************************99********99999*****************************9988..**********************9876 PP

>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0012      0.95       8      33 ..      18      43 ..      13      50 .. 0.83
   2 ?    3.3   0.0     0.011       8.8     219     266 ..     122     167 ..     108     177 .. 0.82
   3 !    7.3   0.0   0.00067      0.55       8      33 ..     230     255 ..     225     261 .. 0.81
   4 ?    2.6   0.0     0.017        14     219     268 ..     336     383 ..     319     393 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0012
   TIGR03211  8 velrvldleealkfykdvlGleetgr 33
                  lr+ ++ ++l+fy +vlG+e  ++
  MMETSP1174-20130828|2661_1 18 TMLRIKEPKRSLDFYINVLGMELIEH 43
                56889999*************98765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.011
   TIGR03211 219 edvlkaaDvlskndvkidvgptrHgitrgqtiYvfdPsGnrvElfagg 266
                  dv+ a   +++ +v+++ +p+  g+    +  ++dP G  +E++++g
  MMETSP1174-20130828|2661_1 122 PDVYTACERFKELGVSFKKSPNSGGMRGLAF--IYDPDGYAIEIICQG 167
                 5888999999999999999999999876555..56*********9666 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00067
   TIGR03211   8 velrvldleealkfykdvlGleetgr 33 
                   +r+ d++ +l fy+dvlG++  +r
  MMETSP1174-20130828|2661_1 230 TMVRIRDPQVSLPFYRDVLGMTLIKR 255
                 4567779999***********99887 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.017
   TIGR03211 219 edvlkaaDvlskndvkidvgptrHgitrgqtiYvfdPsGnrvElfaggyl 268
                  +v++a D +++ +v+++ +p++ g++     ++ dP G  +E+++++ +
  MMETSP1174-20130828|2661_1 336 PNVYDACDRFHELGVEFKKSPNQGGMKG--LAFIKDPDGYWIEIISQAPT 383
                 47899********************975..45779********9966544 PP

>> TIGR03213  23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00057      0.47     143     175 ..      15      47 ..       3      83 .. 0.84
   2 ?   -1.4   0.0      0.32   2.6e+02     136     166 ..     107     136 ..      86     144 .. 0.76
   3 !    5.8   0.0    0.0021       1.7     146     175 ..     230     259 ..     210     271 .. 0.82
   4 ?    1.1   0.0     0.058        47     128     167 ..     316     351 ..     294     378 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00057
   TIGR03213 143 lGhvvlavedvdaaleFYtevLGlqlsdviklk 175
                 +  ++l++++ +++l+FY +vLG++l + +++ 
  MMETSP1174-20130828|2661_1  15 MQQTMLRIKEPKRSLDFYINVLGMELIEHMDFA 47 
                 556789999****************99888775 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.32
   TIGR03213 136 fvtgdqGlGhvvlavedvdaaleFYtevLGl 166
                 +   + G+Gh+ ++ +dv  a+e + + LG+
  MMETSP1174-20130828|2661_1 107 YDGCNGGFGHIGITLPDVYTACERF-KELGV 136
                 55667899**999999999999877.45665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0021
   TIGR03213 146 vvlavedvdaaleFYtevLGlqlsdviklk 175
                 ++++++d + +l FY++vLG++l + ++++
  MMETSP1174-20130828|2661_1 230 TMVRIRDPQVSLPFYRDVLGMTLIKRLDFP 259
                 678899***************998877765 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.058
   TIGR03213 128 vspaavkgfvtgdqGlGhvvlavedvdaaleFYtevLGlq 167
                 +++ +   +   + G+Ghv ++v++v +a++ + + LG++
  MMETSP1174-20130828|2661_1 316 HTGNS---YDNVKGGFGHVGITVPNVYDACDRF-HELGVE 351
                 44433...4456779999999999998887766.345654 PP

>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.55   4.5e+02      15      42 ..      28      55 ..      19      64 .. 0.80
   2 ?    3.9   0.0     0.019        16      72     104 ..     112     143 ..     101     162 .. 0.71
   3 ?    3.0   0.0     0.036        30      14      43 ..     239     268 ..     228     277 .. 0.84
   4 !    5.5   0.0    0.0064       5.3      72     106 ..     326     359 ..     319     379 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.55
   TIGR03081 15 aaklyrdvlGakvseeeelpeqgvkvvf 42
                   +y +vlG+++ e+ +++  g +  f
  MMETSP1174-20130828|2661_1 28 SLDFYINVLGMELIEHMDFASYGFSLYF 55
                56799*******9999998887776665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.019
   TIGR03081  72 eGlhhialevddieaaletlkekgvrlldeepr 104
                 +G  hi +   d+ +a e  ke gv   +++p 
  MMETSP1174-20130828|2661_1 112 GGFGHIGITLPDVYTACERFKELGVSF-KKSPN 143
                 567777777777777777777777754.34444 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.036
   TIGR03081  14 eaaklyrdvlGakvseeeelpeqgvkvvfl 43 
                     +yrdvlG+++ ++ ++p+ g +  f+
  MMETSP1174-20130828|2661_1 239 VSLPFYRDVLGMTLIKRLDFPQYGFSLFFM 268
                 55679*************999999888776 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.0064
   TIGR03081  72 eGlhhialevddieaaletlkekgvrlldeepriG 106
                 +G  h+ + v ++  a +  +e gv+  +++p +G
  MMETSP1174-20130828|2661_1 326 GGFGHVGITVPNVYDACDRFHELGVEF-KKSPNQG 359
                 677777777777777777777777765.3444444 PP

>> TIGR02295  HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.015        12       8      33 ..      18      43 ..      13      52 .. 0.81
   2 ?    0.2   0.0     0.092        75     231     260 ..     139     166 ..     108     171 .. 0.59
   3 ?    1.1   0.0     0.046        38       8      31 ..     230     253 ..     226     261 .. 0.84
   4 !    3.7   0.0    0.0079       6.4     213     270 ..     337     390 ..     316     398 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.015
   TIGR02295  8 velvvtDLeksrefYseilGlreeek 33
                 +l++++ ++s++fY ++lG+   e+
  MMETSP1174-20130828|2661_1 18 TMLRIKEPKRSLDFYINVLGMELIEH 43
                678899999***********987654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.092
   TIGR02295 231 erGPGRhGvsnafflYlrDpDghRielyts 260
                  + P   G+    f+Y  DpDg  ie+ ++
  MMETSP1174-20130828|2661_1 139 KKSPNSGGMRGLAFIY--DPDGYAIEIICQ 166
                 3444444444444444..777777777665 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.046
   TIGR02295   8 velvvtDLeksrefYseilGlree 31 
                  +++++D + s+ fY ++lG++  
  MMETSP1174-20130828|2661_1 230 TMVRIRDPQVSLPFYRDVLGMTLI 253
                 5678999999**********9865 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.0079
   TIGR02295 213 eiikaaDilasaglsdaierGPGRhGvsnafflYlrDpDghRielytsDYltlDpDle 270
                 ++ +a+D + + g++    + P + G+      +++DpDg  ie+ ++  +++  D++
  MMETSP1174-20130828|2661_1 337 NVYDACDRFHELGVE--FKKSPNQGGMKGLA--FIKDPDGYWIEIISQAPTRIRRDVD 390
                 456677777777776..67777777776544..5799999999998887766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1190.83
//
Query:       MMETSP1174-20130828|2663_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-19   68.3  19.6    6.5e-17   59.9   7.1    2.1  2  TIGR00861 MIP: MIP family channel proteins


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   7.1   1.6e-20   6.5e-17       1     175 [.      48     202 ..      48     208 .. 0.84
   2 !   19.2   2.4   4.3e-08   0.00017      30     111 ..     182     264 ..     178     270 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.6e-20
   TIGR00861   1 aeflgtlllvffgvgvvlvvnvakavsavgggtllevalafglavallvyavggiSGahlNPAvTlallvlrkfplkkvvvYivaQliGailgaallylltkkalegdlavaesaaaGalavfpklssvqalvvefiltaiLvlvilaltdkrealssgglaplaiGllvvlivl 175
                 aef+gt++lv+  +g+ ++ ++ ++        ll   la    +++l+ ++g +SGah+NP vT+ +++ +++ + + +v+i aQ++G+ilga+ + ++++ +++++++ ++ +++G            ++++e+++t+ L+++il+  +  e+       p+a+Gl +++   
  MMETSP1174-20130828|2663_1  48 AEFVGTMFLVATIIGSGMMGDNLSTDDG---VALLGNTLATWGILFVLITVFGPVSGAHFNPVVTVVFFLRQEIRILQTLVMIPAQVLGGILGAIAAHGMFN-VVAVEFEGKDRNTHG------------EFFSEIVATVGLLVTILGCIHGGEKD----KIPMAVGLFITAGYW 202
                 8*********999999888776553333...44777777766678899999**************************************************6.666666666665666............9*****************99766662....589999999998765 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 4.3e-08
   TIGR00861  30 gggtllevalafglavallvyavggiSGahlNPAvTlallvlrkfplk...kvvvYivaQliGailgaallylltkkalegdlav 111
                 +gg+ +++ +a gl ++++++ +   S a  NPAvT+a  +++ f+ +      +Y+  Q +G +l+ +    ++ k++  ++ +
  MMETSP1174-20130828|2663_1 182 HGGEKDKIPMAVGLFITAGYWFTLSTSFA--NPAVTIARSFTGTFAGIsteSFGAYFGGQAVGTVLAIVFCQWIFAKKTFAKAVM 264
                 5578899**************99877765..********9988876551115679************999999998887655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1052.03
//
Query:       MMETSP1174-20130828|2670_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|2672_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|2671_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1    9.7   1.9      0.098    9.7   1.3    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.3   2.4e-05     0.098      73     126 ..      12      61 ..       2     114 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.4e-05
   TIGR03752  73 kelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqa 126
                 ++ ++l+k+N++l++e +rl+  e+++ ++++     ++ +++++ e+++ +++
  MMETSP1174-20130828|2671_1  12 RDREDLMKQNTDLRNEVKRLQDVESETLQKLRA----QNDQFRSKFEKAQLAMQ 61 
                 345778888888888888877766655555544....44444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       343  (0.0836177); expected 82.0 (0.02)
Passed bias filter:                      257  (0.0626524); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 523.83
//
Query:       MMETSP1174-20130828|2675_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|2677_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 1970.41
//
Query:       MMETSP1174-20130828|2682_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1174-20130828|2694_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|2692_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 1922.09
//
Query:       MMETSP1174-20130828|2698_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-29   98.9   0.0    7.7e-29   98.7   0.0    1.1  1  TIGR01198 pgl: 6-phosphogluconolactonase
      1e-05   22.8   0.0    0.00058   17.1   0.0    2.1  1  TIGR00502 nagB: glucosamine-6-phosphate deaminase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   3.7e-32   7.7e-29       6     209 ..      60     260 ..      55     283 .] 0.86

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 3.7e-32
   TIGR01198   6 aelaealaervatklekalaekgqallalsGGrspialleaLaaq...kldWsrihlflgDERivplddadsntkllrealLdrvaipasnihlvptelsedveeaaekyeqelaaakqpeevpsfDlllLGmGpDgHtaSLFPetpalqeteklvvvltkspkppheRitltlpvlnaakkvlllvaGeeKaavlaeilkveaeel 209
                   +a+al + + +++++ +   g+++la++GG+  ++l e+La+     ++W++++l+++   ++  ++a+s+  ++ + + + + ++    h+ p+  + d  e+a+ y+++l+aa ++   ++ D ++LG+G DgH+a L P ++a+   e++vv   k +  p+  +t+++++ln+a  v+++v+G +K++++a++l++++e+ 
  MMETSP1174-20130828|2698_1  60 IAVADALCQMICAEAKHSIVTTGRFVLAVAGGSCLDSL-ENLARTvpgMVEWQKVTLVYANHKCIAPSEANSTHAKVLHKFASALGMTVVAPHPAPKMGT-DGTEEAAYYQRALEAAGNK---EVPDFVVLGLGVDGHVAGLHPGSMAMSSIENRVVAAPKGGGEPP-SVTMSMAMLNKAGRVVVVVTGGDKKDAVARALRNDQEPH 260
                 5678999**************************99996.899999999*************************999999998888888888888877774.78999999*********99...57799***********************9998777777666654.5*******************************9655443 PP

>> TIGR00502  nagB: glucosamine-6-phosphate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.8e-07   0.00058      32     221 ..      81     258 ..      53     283 .] 0.68

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.8e-07
   TIGR00502  32 erpfvlGlatGgtPvglykqlielykagkvsfkkvvtfnldeyvglseehPesyhsfmyenffqhidikpeninilnGnaddleaecrryeekikslGkidl...fllGiGadGhiafnePgsslesrtrvktltedtiiansrffegdvnkvPkkaltvGiktildskevlllvsGkekaeavkklvegsvn 221
                    fvl +a Gg+ +   ++l +    g v+++kv+ +   ++  + +++ +s h  + ++f + + ++    +       d   e   y+  ++ +G+ ++    +lG+G+dGh+a   Pgs   s        e+ ++a  +  +g++   P  ++t+ +  + ++ +v+++v+G +k +av +++ +  +
  MMETSP1174-20130828|2698_1  81 TGRFVLAVA-GGSCLDSLENLARTV-PGMVEWQKVTLV-YANHKCIAPSEANSTHAKVLHKFASALGMTVVAPHPAPKMGTDGTEEAAYYQRALEAAGNKEVpdfVVLGLGVDGHVAGLHPGSMAMSSI------ENRVVAAPK-GGGEP---P--SVTMSMAMLNKAGRVVVVVTGGDKKDAVARALRNDQE 258
                 346999887.556688888888765.6899**998665.567788999999**************999987766655566667778899*********986544379***************9766542......333344333.23333...3..3566667777788888888888888888887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1131.91
//
Query:       MMETSP1174-20130828|2699_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-24   84.5   9.1    2.4e-24   83.9   6.3    1.2  1  TIGR00886 2A0108: nitrite transporter
     0.0093   12.3   2.4      0.011   12.0   1.7    1.0  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   6.3   1.2e-27   2.4e-24     253     368 .]       2     118 ..       1     118 [. 0.95

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 1.2e-27
   TIGR00886 253 kdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglvkesseslavavvlfvvlflfvglgnGstFalvpvvfrratgavsGlvgaiGnlGg 368
                  ++f l+  +ag +a++++l++l+aR+ GGllsD +++     +r  + + +l + g++lv+++      + l +av ++v+++lfv++++G+tFalvp+v++ atg v+G+vga+Gn+G+
  MMETSP1174-20130828|2699_1   2 FTKFDLNVQTAGTIAASFGLMNLFARAWGGLLSDYMSKkigmkGRLYVHMGVLFFEGIMLVIFSRI----DILGAAVPVLVLFSLFVQAAEGATFALVPYVNPSATGSVAGIVGAGGNIGA 118
                 68899*********************************9*9999999999999999*999999887....37999999******************************************7 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   1.7   5.6e-06     0.011      71     245 ..       5     183 ..       3     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.6e-06
   TIGR00894  71 faWseklqGlilssvfygslilqipvG....ylakkygtkkvigaalllssvlslliPiaaavgval..vivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHpkisesEkkyiekslveev 245
                 f+ + +  G i +s+ +  l+    +G    y++kk g+k  + + + +  +  +++ i +++ + +  v vl ++  + + ++  a+++l + ++ P   +++ ++v +G ++G+++  +i+ + + s+l     f i+g + t +++l  ++ + d     +  ++E k  +++ +++v
  MMETSP1174-20130828|2699_1   5 FDLNVQTAGTIAASFGLMNLFARAWGGllsdYMSKKIGMKGRLYVHMGVLFFEGIMLVIFSRIDILGaaVPVLVLFSLFVQ-AAEGATFAL-VPYVNPSATGSVAGIVGAGGNIGAVVWSMIFRFGVPSGLTMSDCFTIIGCCVTTLSLLSPFIWMKDQDALFCNPRREAKSSNEEAMQSV 183
                 777888889999999999999988888333355678888888899999999999999999998876542555555555555.567788876.6799*****************************9***999***************9998888887777777777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 954.38
//
Query:       MMETSP1174-20130828|2702_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.8   0.8      0.023   10.7   0.6    1.0  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
      0.043   11.6   0.8      0.046   11.4   0.6    1.0  1  TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family


Domain annotation for each model (and alignments):
>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.6   1.1e-05     0.023     176     225 ..       4      51 ..       2      59 .] 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.1e-05
   TIGR03007 176 kleeaenrLkaFkqenvgilpdqegdyyeelkeaeeeLeearlelkeaka 225
                 kl e ++rL+aF++++++ +p qe+  ++  +e ee  ++a+l   e +a
  MMETSP1174-20130828|2702_1   4 KLVEMQARLTAFQKKKGAEVPTQEEPPVKSAEEIEEARKAAKLV--EMQA 51 
                 899*********************97776666666665555543..3333 PP

>> TIGR02983  SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   2.3e-05     0.046      65     115 ..       7      57 ..       3      59 .] 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.3e-05
   TIGR02983  65 lvnlaisrwRrrrveelateelPdaeaedaaadeaeraallealrrLparq 115
                  +++++++  +++  e++t+e P+ + +++ +++ + a+l+e  +rL+a q
  MMETSP1174-20130828|2702_1   7 EMQARLTAFQKKKGAEVPTQEEPPVKSAEEIEEARKAAKLVEMQARLTAFQ 57 
                 57788889999999************888888899***********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1174-20130828|2701_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1690.31
//
Query:       MMETSP1174-20130828|2704_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.3   0.5      0.014   13.2   0.4    1.0  1  TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01583  formate-DH-gamm: formate dehydrogenase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   3.3e-06     0.014     100     165 ..      19      83 ..       2      84 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-06
   TIGR01583 100 eaGkynlGqkllywvlvlagvlllitGillyfldfpetafsiellrlsvlihelsalilavfiivh 165
                 + G + +G+    ++l l g++ l  G++ +   +pe+ fs ell +s++i  + +++  + + +h
  MMETSP1174-20130828|2704_1  19 NLGNFTFGDIFDTFTLKLRGFVTLNPGLIPFVCSYPEYDFSHELL-ISTIIPIIITFLTGMCTFMH 83 
                 5799**********************************9999877.89999988888888777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|2705_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|2711_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 544.46
//
Query:       MMETSP1174-20130828|2715_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|2718_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|2710_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1333.55
//
Query:       MMETSP1174-20130828|2720_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1505.65
//
Query:       MMETSP1174-20130828|2722_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1174-20130828|2726_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|2731_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 146.13
//
Query:       MMETSP1174-20130828|2732_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1174-20130828|2737_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|2730_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.9e-176  582.5   1.9   1.1e-175  582.3   1.3    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
   1.5e-143  476.6   1.8   1.8e-143  476.4   1.2    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
   4.1e-136  452.6   2.4     5e-136  452.3   1.6    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   1.5e-113  378.1   0.3   1.8e-113  377.8   0.2    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    2.5e-98  327.6   0.2    3.1e-98  327.3   0.1    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.4e-93  312.2   0.1    1.8e-93  311.9   0.1    1.0  1  TIGR02053 MerA: mercuric reductase
    1.6e-69  232.8   0.7    2.1e-69  232.4   0.5    1.1  1  TIGR03452 mycothione_red: mycothione reductase
    2.6e-28   96.8   0.6    2.6e-28   96.8   0.4    1.9  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.2e-15   52.6   4.6    1.1e-13   48.5   0.0    2.7  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    8.3e-15   52.3   0.5    1.1e-06   25.6   0.0    3.2  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.9e-14   50.9   0.0    2.8e-14   50.3   0.0    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.9e-14   51.4   0.0    4.2e-13   47.0   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    2.1e-09   34.5   0.1      1e-08   32.2   0.0    1.9  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.3e-08   30.4   2.3    8.8e-07   25.7   0.1    2.3  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    2.5e-07   27.4   9.6    2.8e-06   24.0   0.3    2.7  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    1.4e-06   23.8   0.6    6.8e-05   18.3   0.0    2.8  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.8e-06   24.6   0.0     0.0019   14.7   0.0    2.5  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    3.3e-06   24.1   0.2     0.0094   12.7   0.1    2.4  2  TIGR00518 alaDH: alanine dehydrogenase
    7.6e-06   22.8   3.6      0.028   11.0   1.4    3.0  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    4.5e-05   19.8   0.4     0.0086   12.3   0.2    2.5  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00017   18.4   0.4    0.00056   16.7   0.0    2.0  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00018   17.2   1.0    0.00034   16.3   0.7    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0011   16.5   3.3      0.017   12.6   0.9    2.8  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0014   15.0   0.5      0.019   11.3   0.4    2.0  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0028   14.8   0.7     0.0053   13.8   0.5    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0094   12.8   0.3      0.016   12.0   0.2    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
      0.011   11.9   5.2      0.026   10.7   0.5    2.6  3  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.055   10.3   0.6       0.74    6.6   0.0    2.2  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.062   10.4   2.8        1.4    5.9   1.8    2.4  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.065    9.9   1.5       0.45    7.1   0.2    2.7  3  TIGR02730 carot_isom: carotene isomerase
        1.2    5.9   7.4        4.5    4.1   1.0    3.0  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  582.3   1.3  8.5e-178  1.1e-175       1     446 []      46     505 ..      46     505 .. 0.98

  Alignments for each domain:
  == domain 1    score: 582.3 bits;  conditional E-value: 8.5e-178
   TIGR01424   1 ydydlfviGaGsGGvraarlaaalGakvaiaeedl.........vGGtcvirGcvPkkllvyasefaeeledakgyGwe.vekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle...dgktytaekiliavGgrpvkpelPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeele.erGirillktvlksiekvddG.lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtmr 446
                 ydydl+viG+GsGGvra+r+aa +Gakva+ e +l         +GGtcv  GcvPkkl+v+a ++++e+ +a+gyGw+      fdwk+++++k++ei+rl+++y  +l   gve +eg ++  ++++ve+      ++t+ta+kil+avGg p kp++PG e +its+e+f le++Pk+i++vGgG+iavefa+i+ GlG+ vtl+yrg+  lrgfd d+r +l+ee+  + G+ +  +t  k+i k++dG l v++ ++e++vad+v++atGr+ +++ l+le++Gve+ + g i v+eys+t+v++iyavGdvtdri ltPva++e++ +a+t f++  +k dh+ va++vf++Pe++tvG seeea+ek+ +di vy++ fr mk+++   +   l+k++vd+++dkv+G+hv  + a+e+iq+++ia+k+Gatk++fd t+++hP+saeelvtmr
  MMETSP1174-20130828|2730_1  46 YDYDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLkhgapnysaIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKgATAGTFDWKTFIEAKNTEITRLNNIYDGMLGGQGVETIEGLGKFNGKHEVEISLrsgGTQTVTADKILVAVGGWPFKPDIPGIEHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNEDGtLTVITRDGESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGGLDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKY-QDIAVYKSRFRAMKHSFPKSETYSLFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEELVTMR 505
                 9********************************999*******************************************777889**********************************************9876434459*****************************************************************************************8689*******************9999999*******************************************************************************************************************.************************************************************************************8 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.4   1.2  1.4e-145  1.8e-143       4     484 ..      48     518 ..      45     519 .] 0.96

  Alignments for each domain:
  == domain 1    score: 476.4 bits;  conditional E-value: 1.4e-145
   TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvan.gidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmrtpayyyikgkkve 484
                 ydl+vig gsgg+ a   aa  +  +va+++ q +hg p y+a+ggtcvnvgcvpkklmv   +y  ++ e+ag+gw+  a +   +wk++i akn+ ++ +n+ y++m+   +g+e   g+g ++ k+ v +      +s   +++ a+ il+a g wp + +i+gie+ i+sne fylee pkr+++vggg+i+vefa i++     g +v+l yr+dm lrgfds++r +l +++  n g+d++ n +p  + kn dg+  v+   g++   d vm a gr  +++ l+l+ +gve  + g i v+eys+tnvdniya+gdvtdr+ ltpva+ eg  + dt+f+   rk dh  vas+vf+ p ig++g+ eeeaa ky+++avy+s f  + h    s+    + ki+ d    +v+gvh+  d + e+iq ++i++k++a   +f +tig+hptsaeel++mr+p+y+y+ g kve
  MMETSP1174-20130828|2730_1  48 YDLLVIGGGSGGVRASRIAAG-HGAKVALLEGQLKHGAPNYSAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKG-ATAGTFDWKTFIEAKNTEITRLNNIYDGMLG-GQGVETIEGLGKFNGKHEVEIS----LRSGGTQTVTADKILVAVGGWPFKPDIPGIEHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMD---GLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSWNsGVDLKFNTDPKEIIKNEDGTLTVITRDGESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGGLDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKYQDIAVYKSRFRAMKHSFPKSETYS-LFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEELVTMRSPSYHYKGGVKVE 518
                 9**************987765.8899***************************************************95.5566789**********************96.68***************99875....5677788999******************************************************97...579***************************987659************************************************************************************************************************************************************99886443.45999999999*************************************************************98 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.3   1.6  3.7e-138    5e-136       2     450 .]      47     505 ..      46     505 .. 0.97

  Alignments for each domain:
  == domain 1    score: 452.3 bits;  conditional E-value: 3.7e-138
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveek.........klGGtcvnvGcvPkkvmwyaaslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveele.kaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtlr 450
                 +yd+lviGGGsGG+ + r aa +Gak++l+e++         ++GGtcvnvGcvPkk+m  a      + +aa+yG+k ++ ++f++k++ e +++ + rln iy+  l  + ve ieG  +f++++ ve++ ++     +ta++il+a Gg p +p +iPG e +++s+++f lee+Pkr+vivG G+iave+a +++glGs+  l+ r++  lr+fd+ +  ++ ee+  ++g++++ ++ ++++ k+ +g l++   dg e+  +d++++a+Gr+ +t+ l+le +gv++ + g+i v+ey  tnv++iya+Gdv+ ++ ltPva+  G +l++ lf+g  d k d+e v + vf+ PeigtvG +e+ea eky  +++ vyks+f am +++ k+ + s +k+++ ++ +kvvG+h+  +g+ e++qG ++a+kmGatk  fd+t+ ihPts+eelvt+r
  MMETSP1174-20130828|2730_1  47 DYDLLVIGGGSGGVRASRIAAGHGAKVALLEGQlkhgapnysAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKGATAGTFDWKTFIEAKNTEITRLNNIYDGMLGGQGVETIEGLGKFNGKHEVEISLRSggtqtVTADKILVAVGGWPFKP-DIPGIEHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNEDGTLTVITRDG-ESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGG-LDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKY--QDIAVYKSRFRAMKHSFPKSETYSLFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEELVTMR 505
                 6******************************854444444447****************************************************************************************9877777789****************.**********************************************************************997589***********************99**9.999**************************************************************************98.589*******************************..68**********************************************************************************9 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.8   0.2  1.3e-115  1.8e-113       1     476 [.      46     508 ..      46     516 .. 0.94

  Alignments for each domain:
  == domain 1    score: 377.8 bits;  conditional E-value: 1.3e-115
   TIGR01438   1 ydydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrs.illrGfdqdcavkvkeylk.eqGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvklsvtkrsGs 476
                 ydydl+viGgGsGG+ a++ aa +gakv+ll+        +   iGGtcvnvGc+pkklm  a+    ++ ++  yGw++      dw+ + +a + +i  ln +y   l  + v+ i++++++ +k+ ++   + +  ++++a+++l+a G  p  p di+G  e +its+++f l+++p + ++vG++++a+e a  + +lg dvt++ r  + lrGfd d+ v+++e +  + Gv +k +  pk + k e+  l   t   ++ +   d v+ya Gr+a++++lnle+ gv++  k g i+++e+++tnv++iyavGd+  d+  ltpva+  G+ lad lf++ ++++d+e v++tvft  e+g+vG+see+a eky  +++ v++s+f  +++s p+ +     + k++   +  ++vvG+h+    age++qG+ +a+++g +k+++d+tigihp+saee+v+    +rs s
  MMETSP1174-20130828|2730_1  46 YDYDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHGAPNYSAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKGATAGTFDWKTFIEAKNTEITRLNNIYDGMLGGQGVETIEGLGKFNGKHEVEISLRSGGTQTVTADKILVAVGGWPFKP-DIPGI-EHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGdMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNEDGTLTVIT--RDGESFVADQVMYATGRNAKTESLNLESTGVETL-KGGFIPVNEYSQTNVDNIYAVGDVT-DRIALTPVALMEGHRLADTLFGGLDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKY--QDIAVYKSRFRAMKHSFPKSET--YSLFKIIVDSN-TDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEELVT----MRSPS 508
                 8******************************9988888888899******************************************************************************************************************.5***9.***********************************************6489**************998578******************9999999..34677788***********************986.5799*******************86.7999*****************************************************..5799**************9988..77889887765.679********************************************865....45555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.3   0.1  2.4e-100   3.1e-98       2     447 ..      48     501 ..      47     508 .. 0.93

  Alignments for each domain:
  == domain 1    score: 327.3 bits;  conditional E-value: 2.4e-100
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalve.........keklGGtClnvGCiPtKalLksaevveelkeakelgieven.vkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklk.kkgvkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEai 447
                 yd++viGgG gG  a+  aa +g kval+e          + +GGtC+nvGC+P K ++ ++    e+ ea+ +g + ++  ++d++++ e k++ +++l++  +++l  ++ve+i+G +k+++k+eve++ +++  ++++a++i++A G  p ++ ++   +    its+e++ l+e+p+++vivGgG i vEfasi+  lG++vt++   d  l  +d+++   l+++++ ++gv++++n+  +e+ k+ed    v ++++  e+  a++v+ a Gr++++e l+le++gve+ + g+i+v+e+ +tnv++iya+GDv++++ L  vA  eg   a++++g  ++++d++ v s ++t+Pe+ +vG++ee+a e++ +++v k  f+a+ ++   +et  + k+ivd +t++++G+h+    a e+i+ + +av++++t ++   ti  HPt +E +
  MMETSP1174-20130828|2730_1  48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEgqlkhgapnYSAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKGATaGTFDWKTFIEAKNTEITRLNNIYDGMLGGQGVETIEGLGKFNGKHEVEISLRSGGtQTVTADKILVAVGGWPFKPDIP-GIE--HTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNEDGTLtVITRDG--ESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGGLDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKYQDIAVYKSRFRAMKHSFPKSETYSLFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEEL 501
                 9****************************94443333212469**********************************88879************************************************97765559******************994.333..368**********************************************************9999874678**********88877776652554555..79****************************************************************************9999***********************************************************************************************************99976 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.9   0.1   1.4e-95   1.8e-93       1     446 [.      48     501 ..      48     505 .. 0.93

  Alignments for each domain:
  == domain 1    score: 311.9 bits;  conditional E-value: 1.4e-95
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve....rG.....ilGGtCvnvGCvPSKallraaevaklakkas.vglla.aevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl...gkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellae.eGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 ydl++iG+G++++ a   aa  gakv+l+e    +G      +GGtCvnvGCvP K ++ a++    + +a  +g +  ++ + d ++ +e k++ ++ l ++ Y  +l    +v+ +eg +kf+++++v++ l   g+++v+a+++l+A+G  p +P+ipG+++   +ts+e++ l++ p+++v++Ggg iavE+a ++  lGs+vtl++r + +l   + ++ + ++e ++   Gv++  ++  k++ k n++++l  ++     ++  ad+++ AtGR++ +++LnLe +gv++ + G+i v+e+++t+  +iyA GDv++ + l  vA  eG   A+  +gg ++k d e + + vFt Pe+ +vG++eee+a++  ++++   +  a+ +   + et  l+K++++++t kv+gv+v ++ A+e+i+   +a+k+g+t ++  dt+ +++t aE l
  MMETSP1174-20130828|2730_1  48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEgqlkHGapnysAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAgYGWKGaTAGTFDWKTFIEAKNTEITRL-NNIYDGMLGGQ-GVETIEGLGKFNGKHEVEISLrsgGTQTVTADKILVAVGGWPFKPDIPGIEH--TITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSWnSGVDLKFNTDPKEIIK-NEDGTLTVITR--DGESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGGLDRKCDHEWVASTVFTTPEIGTVGYSEEEAAEKYQDIAVYKSRFRAMKHSFPKSETYSLFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDDTIGIHPTSAEEL 501
                 8**************9999*********86444455333336**********************9999999877776515578999*******9999988.678*******9.5******************99999999999999*****************97..59***********************************************************99998549********9999988.45555444444..356888*******************************************************************************************************************************************************************************************976 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.5   1.6e-71   2.1e-69       2     443 ..      47     499 ..      46     503 .. 0.86

  Alignments for each domain:
  == domain 1    score: 232.4 bits;  conditional E-value: 1.6e-71
   TIGR03452   2 hydliiiGtGsGnsilderf..edkriaive....kG.....tfGGtclnvGciptkmfvyaaevakevkesarlgid.aeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrkt....lrtedgeeitadqvviaaGsrpvipeaiaesgv.ryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakkk..fdvrlgrnvtaaeqdddg.vtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                 +ydl++iG GsG    +     +  ++a++e    +G     + GGtc+nvGc+p k+ v+a     e+ e+a +g + a+  + +w+  ++         i++  + y        ++  e   +f g++     lr + ++++tad++++a G+ p+ p++    g+ +  t+++i  l+e+p+++vivGgG+ia+efa ++++lG++vtl+ r++++lr  d d+  ++ e  + +  +d++ ++   +  +++dg +t+ + dG++  ad ++ atGr + ++ l++e++Gve+ ++g + v+ey +t +++++a+Gdv++   l  va  e   +++ l    d +k dh++v ++vft p i+tvG +e+ea e+ +di+v    +  + + +   +t +l k+i+d +t k++G h+    a  +iq +  a+ +g + +++      ihp+ +e
  MMETSP1174-20130828|2730_1  47 DYDLLVIGGGSGGVRASRIAagHGAKVALLEgqlkHGapnysAIGGTCVNVGCVPKKLMVFAGRYPGEIGEAAGYGWKgATAGTFDWKTFIEAKNT----EITRLNNIYDGMLGGQGVETIEGLGKFNGKHEveisLRSGGTQTVTADKILVAVGGWPFKPDIP---GIeHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSWNsgVDLKFNTDPKEIIKNEDGtLTVITRDGESFVADQVMYATGRNAKTESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLFGGLD-RKCDHEWVASTVFTTPEIGTVGYSEEEAAEKYQDIAVYKSRFRAMKHSFPKSETYSLFKIIVDSNTDKVVGVHVATDGAGEMIQGIGIAVKMGATKQQFDD-TIGIHPTSAE 499
                 7***********87666544114579999984443333333368********************************983566789***98876554....45555566666666668899999999997765111155566677**************999863...3304579******************************************************998887665441166676777777778888879*********************************************************************************9998766.789******************************************************************************************99999864.5678887654 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       7.1   9.4e+02       2      14 ..      50      62 ..      49      66 .. 0.78
   2 !   96.8   0.4   1.9e-30   2.6e-28     105     416 ..     190     486 ..     171     495 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 7.1
   TIGR03385  2 ivivGgvaaGasa 14
                ++++Gg+++G+ a
  MMETSP1174-20130828|2730_1 50 LLVIGGGSGGVRA 62
                679*****99864 PP

  == domain 2    score: 96.8 bits;  conditional E-value: 1.9e-30
   TIGR03385 105 DkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeele.kkeielrlneevksvegeekve..vlt.sgkvyqaDlvilavGvkPnse..likssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk.diefkGvlGtsivkfldltiaktGltenelkklnidyktvevkakakanYYPgakdl.llklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkd 416
                 Dk++++ G  p +++i+gi     +t+     +++i  yl +++ +++v++GgG+i++e +  +   g +vtl+ r++    + +D+++   + ee++ + +++l++n + k+++ +e     v+t +g+   aD v+ a+G + ++e   ++s+++++ k G+i+vne+ qt+v+niya+GDv++           + l ++a   g+ +a+ + G  d +       +++ f   +i+++G  e+e+  +  d+ + + + +a  + +P ++   l k+iv+++t k++g+  v  +g+ + i+ + +a+k ++t ++
  MMETSP1174-20130828|2730_1 190 DKILVAVGGWPFKPDIPGI----EHTIT----SNEI-FYL-EEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMF-LRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNEDGTltVITrDGESFVADQVMYATGRNAKTEslNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTD----------RIALTPVALMEGHRLADTLFGGlDRKCDHEW-VASTVFTTPEIGTVGYSEEEAAEKYQDIAVYKSRFRAMKHSFPKSETYsLFKIIVDSNTDKVVGVH-VATDGAGEMIQGIGIAVKMGATKQQ 486
                 7777777777777777773....23332....3334.355.789**********************************99.689*************85779**********999887654445553889999*********8776652157999****************************975..........4556666677777778888776555554433.455669999************97777888888888899999**99876256*************96.78999*************9999876 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.014       1.8       1      36 [.      48      83 ..      48      89 .. 0.92
   2 !   48.5   0.0     8e-16   1.1e-13      94     277 ..     182     365 ..     161     377 .. 0.78
   3 ?   -3.5   0.1       5.8   7.6e+02     256     290 ..     449     482 ..     432     485 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.014
   TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegkeagg 36
                yd+++iG+G +G+ a+  aa  + k++l+eg+ + g
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83
                799***************************988777 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 8e-16
   TIGR01292  94 edekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfkn...kevavvGggdsAveealyLskiakkVtlvhrrdkl.r.....aekillerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdk 277
                 + +++++a+ +++A+G  + k +i+        G+    +    ++ +   k++++vGgg  Ave a  +  ++++Vtl+ r d + r      +  l e+++ n+ +++ +n+  +ei  +e  +  +i    t++ e++ +d v +a G +++te l+ +   +e+ + g+i v+e ++T+v+ ++a+GDv+d+
  MMETSP1174-20130828|2730_1 182 GGTQTVTADKILVAVGGWPFKPDIP--------GIEHTITSNEIFYLEeqpKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFlRgfdsdMRVHLREEMSWNSGVDLKFNTDPKEIIKNEDGTLTVI----TRDGESFVADQVMYATGRNAKTESLNLEstgVETLKGGFIPVNEYSQTNVDNIYAVGDVTDR 365
                 4567777777777777777777777........44455555666775422379******************************98743221112345778888889*************99886554444....46677899**************9987655699999************************996 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 5.8
   TIGR01292 256 vvdeemrTsveGvfaaGDvrdkslrQvvtaagdGa 290
                 +vd+++  +v Gv+ a D   ++++ +  a+ +Ga
  MMETSP1174-20130828|2730_1 449 IVDSNT-DKVVGVHVATDGAGEMIQGIGIAVKMGA 482
                 444443.4678888888888888888888888886 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.29        38     135     300 ..      49      75 ..      12      91 .. 0.60
   2 !   25.6   0.0   8.1e-09   1.1e-06     272     345 ..     224     302 ..     221     308 .. 0.76
   3 !   22.3   0.1   7.9e-08     1e-05     373     443 ..     309     381 ..     301     384 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.29
   TIGR01316 135 kvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayGipefrlpkeivetevkklkklGvkfrldylvGktvtleellekydavfigtGaGlpkllnieGeelkgvysandfltrvnlmkayefpkkdtpvevgkkvvviGgGntavdaartalrlGaevhv 300
                  +                                                                                                                                           +viGgG   v a+r a   Ga+v +
  MMETSP1174-20130828|2730_1  49 DL-------------------------------------------------------------------------------------------------------------------------------------------LVIGGGSGGVRASRIAAGHGAKVAL 75 
                 34...........................................................................................................................................4555555555555555555555443 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 8.1e-09
   TIGR01316 272 gkkvvviGgGntavdaartalrlGaevhvvyrrt...r...edmtareeeikhaeeeGvkfefllqpveviGdeeGevka 345
                  k++v++GgG++av+ a     lG +v+++yr     r    dm     e +   + Gv ++f + p e+i +e+G +  
  MMETSP1174-20130828|2730_1 224 PKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDmflRgfdSDMRVHLRE-EMSWNSGVDLKFNTDPKEIIKNEDGTLTV 302
                 59*****************************9652222111233332222.234578*******************8765 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 7.9e-08
   TIGR01316 373 kleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraak 443
                  + ad v+ a G++a  + +  e+++++t k G i v+e  +t+++ ++a Gdv    a   +al +G+r a 
  MMETSP1174-20130828|2730_1 309 SFVADQVMYATGRNAktESLNLESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLAD 381
                 5679********9762257999*************************************999******99886 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   2.1e-16   2.8e-14      90     279 ..     182     364 ..     172     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 2.1e-16
   TIGR02374  90 dagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrele.kkGltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrde.La.aeaGlkvndrrGiivndsmqtsdPdiyavGecae 279
                    +t++ Dk+++a G  pf + ipG ++       ti   + +    ++ k+ +++GgG++ +e a+ +  lG dv  +    +++ + +D      L++e+  + G+ ++ +++  ei+k++ + + ++  +DG+s  ad v++a+G   ++e L   ++G++  + + i vn++ qt+  +iyavG++ +
  MMETSP1174-20130828|2730_1 182 GGTQTVTADKILVAVGGWPFKPDIPGIEH-------TIT-SNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFL-RGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNE-DGTLTVITRDGESFVADQVMYATGRNAKTEsLNlESTGVETLKGGFIPVNEYSQTNVDNIYAVGDVTD 364
                 55789999******************986.......443.46677788999999***********************9987776665.6778777777777765489***************99.78889999****************999886455246799998444466****************9975 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.15        20     132     158 ..      33      60 ..      11      74 .. 0.70
   2 !   47.0   0.0   3.2e-15   4.2e-13     114     281 ..     193     363 ..     172     370 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.15
   TIGR03169 132 weellekakaseetk.slavvGgGaagv 158
                 ++++ +  +++ e+  +l+v+GgG +gv
  MMETSP1174-20130828|2730_1  33 RSSSIRMSSSAGEYDyDLLVIGGGSGGV 60 
                 33333334444455559**********9 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 3.2e-15
   TIGR03169 114 gaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrlla.krgievlekeevtevede.....alllaegetleadavllatgakapa...wLaesglsldedGflavkktLqslshpevFaaGDca 281
                   a    p KP  + +++  +++e    +e++k++++vGgG+ +vE a  +  +        +v+l+ ++  +l+++ + +r  +++ ++ ++g+++  ++  +e+ ++     ++++ +ge+  ad+v+ atg +a++    L+++g+++ + Gf+ v++  q+ + ++++a+GD+ 
  MMETSP1174-20130828|2730_1 193 LVAVGGWPFKPDIPGIEHTITSNEIFYLEEQPKRIVIVGGGFIAVEFASIMDGLGS------DVTLMyRGDMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNedgtlTVITRDGESFVADQVMYATGRNAKTeslNLESTGVETLKGGFIPVNEYSQT-NVDNIYAVGDVT 363
                 45556778899888889999999999999*****************9977655443......466666******************99985789*******99998877789999999****************8876433269********************9.999*******96 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.77     1e+02     154     181 ..      49      76 ..      45      83 .. 0.66
   2 !   32.2   0.0   7.9e-11     1e-08     107     293 ..     177     367 ..     158     387 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.77
   TIGR04018 154 kvvvvGgknsavdaalelyrkgaevtlv 181
                 +++v+Gg +  v a+     +ga+v+l+
  MMETSP1174-20130828|2730_1  49 DLLVIGGGSGGVRASRIAAGHGAKVALL 76 
                 5666777777776666666666666664 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 7.9e-11
   TIGR04018 107 t.....ekeeyeakkvvvatGyydipnllnvpGedlpkv..shyykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrik.egkikalfesevkeieee...svtletpegeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaagle 293
                        +++++a k++va G +  p + ++pG + +    + +y e  p   +++v+vGg   av+ a  +   g++vtl++rg+ + +     ++ +l++ ++ +  ++++f+++ kei ++   ++t+ t++ge+    +d v+  tG ++++e   le++gve+ +   ipv  +e   tnv+++y +G v+  + 
  MMETSP1174-20130828|2730_1 177 IslrsgGTQTVTADKILVAVGGW--PFKPDIPGIEHTITsnEIFYLEEQP---KRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFLRGFDSDMRVHLREEMSwNSGVDLKFNTDPKEIIKNedgTLTVITRDGES--FVADQVMYATGRNAKTESlnLESTGVETLKGGFIPV--NEYSQTNVDNIYAVGDVTDRIA 367
                 3334456789999******9965..7888999987654411457777665...79*********************************************999883556*******9999865422257777777776..89*********9998886125788888877766666..45569**********9987665 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.023       3.1       5      33 ..      48      76 ..      45      87 .. 0.77
   2 !   25.7   0.1   6.7e-09   8.8e-07     144     283 ..     225     363 ..     206     372 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.023
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvlii 33
                ydl+viGgG+ g+ a   a+    kv ++
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALL 76
                9************9986665555555555 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 6.7e-09
   TIGR03143 144 ldvlviGgGfaaaeeavfltkyakkvtvivrepdf....tcak..aiaekvkanPkievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsself...kgkvelderGyvvtnedletnveGvyaaGdlr 283
                 + ++++GgGf a e a  +   ++ vt++ r++ f      +    + e++  n  +++kfn++ ke+  ++  + + +   + Ge ++ +    +    v+   G   ++e +      ve  + G+++ ne+ +tnv+ +ya+Gd+ 
  MMETSP1174-20130828|2730_1 225 KRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDMFlrgfDSDMrvHLREEMSWNSGVDLKFNTDPKEIIKNEDGTLTVI--TRDGESFVAD----Q----VMYATGRNAKTESLnleSTGVETLKGGFIPVNEYSQTNVDNIYAVGDVT 363
                 6799***************************997622224444114568888899999999999999986655554444..3556655443....4....5556677777765511156799999**********************85 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00049     0.065     204     243 ..      39      78 ..      25      90 .. 0.83
   2 !   24.0   0.3   2.1e-08   2.8e-06     297     489 ..     172     365 ..     124     384 .. 0.73
   3 ?   -2.6   0.3       2.4   3.1e+02     467     503 ..     448     483 ..     441     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00049
   TIGR03140 204 eeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvae 243
                 ++++     yd+lv+GgG  g+ a+  aa  G kval+  
  MMETSP1174-20130828|2730_1  39 MSSSAGEYDYDLLVIGGGSGGVRASRIAAGHGAKVALLEG 78 
                 555666778**************************99765 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2.1e-08
   TIGR03140 297 eeakevelesG..evlkaksvivatGakWrelgvpGekeylg.kGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvle....fadelkadk.v.lveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpnteflk..da.velnrrGeividergrtsvkGifaaGdvttv 489
                 +++ e++l+sG  ++++a+ ++va G    + ++pG ++ ++ + + y         + k++ ++GGG   +e a  + G+ ++vt++     f+  + +d  v l e++   s vd+  ++  kei+ ++d   ++  +d      +++  d v+   G  + te l+   + ve+ + G i ++e ++t+v+ i+a Gdvt+ 
  MMETSP1174-20130828|2730_1 172 KHEVEISLRSGgtQTVTADKILVAVGGWPFKPDIPGIEHTITsNEIFYLEE------QPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYrgdmFLRGFDSDMrVhLREEMSWNSGVDLKFNTDPKEIIKNEDGTLTVITRD-----GESFVADQVMYATGRNAKTESLNleSTgVETLKGGFIPVNEYSQTNVDNIYAVGDVTDR 365
                 344556666663356788888888888777888888555544145555543......56****************************9722224445556642336677777889*************9987655444333.....3445567888899999999987522336*****************************86 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.4
   TIGR03140 467 ividergrtsvkGifaaGdvttvpykqiiiamGeGak 503
                 i++d++ + +v G++ a d +    + i ia+  Ga+
  MMETSP1174-20130828|2730_1 448 IIVDSN-TDKVVGVHVATDGAGEMIQGIGIAVKMGAT 483
                 666655.456889999999999999999999988876 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.05       6.7     527     572 ..      38      82 ..      21      97 .. 0.78
   2 !   18.3   0.0   5.2e-07   6.8e-05     667     836 ..     225     384 ..     210     403 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.05
   TIGR03315 527 klekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkeka 572
                 ++ +++++ +   + viG+G  G+ a+ + a +G +v+++e + k 
  MMETSP1174-20130828|2730_1  38 RMSSSAGEYDY-DLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKH 82 
                 44455555555.789*************************987665 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 5.2e-07
   TIGR03315 667 krvvvvGgGntamdaaraalrvpGv.ekvtvvyrrtk......kemPaskeeleealedGvefkellsPekfedgklvcekmklgekdasGrrrpvetgelveleadaviaavGeqvdtell..kklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakail 836
                 kr+v+vGgG +a++ a     ++G+  +vt++yr          +m  +  e e + + Gv++k+ ++P+++              k++ G   +v t +   + ad v+ a G++  te l  + +g+e+ + g++ vne  ++t+v+n++ +Gd++   a    a+ +g++ a++++
  MMETSP1174-20130828|2730_1 225 KRIVIVGGGFIAVEFAS---IMDGLgSDVTLMYRGDMflrgfdSDMRVHLRE-EMSWNSGVDLKFNTDPKEII-------------KNEDGTL-TVITRDGESFVADQVMYATGRNAKTESLnlESTGVETLKGGFIPVNEY-SQTNVDNIYAVGDVTDRIALTPVALMEGHRLADTLF 384
                 67777777777776553...34554245777776543111111233322222.22344555555555555432.............2233433.445555667889*********999997522689*************99.99************9999988888999999888874 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05    0.0019     272     359 ..     214     305 ..     204     388 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-05
   TIGR01318 272 eeeeplidveGkrvvvlGGGdtamdcvrtairlg.akkvtcvyrrdeanmpGsrrev.anaree.....Gvefkfnvqpleievdedgkvsgvkl 359
                 ++e  + + + kr+v++GGG  a++   ++i  g  ++vt +yr d   + G   ++ +  ree     Gv++kfn  p ei  +edg ++ ++ 
  MMETSP1174-20130828|2730_1 214 SNEIFYLEEQPKRIVIVGGGFIAVEF--ASIMDGlGSDVTLMYRGDMF-LRGFDSDMrVHLREEmswnsGVDLKFNTDPKEIIKNEDGTLTVITR 305
                 566778888999********999986..45555526899****99854.333333221334444444449***************9998876643 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   7.1e-05    0.0094     161     197 ..      41      77 ..      30      82 .. 0.85
   2 !    8.8   0.0    0.0011      0.15     168     196 ..     225     253 ..     222     281 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.1e-05
   TIGR00518 161 GvpGveagkvtiiGgGvvGtnaaklavGlGatvtild 197
                    G    ++ +iGgG  G+ a+++a G Ga+v++l+
  MMETSP1174-20130828|2730_1  41 SSAGEYDYDLLVIGGGSGGVRASRIAAGHGAKVALLE 77 
                 55566667899**********************9986 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0011
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtil 196
                  +++i+GgG + ++ a +  GlG++vt++
  MMETSP1174-20130828|2730_1 225 KRIVIVGGGFIAVEFASIMDGLGSDVTLM 253
                 679************************97 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.4   0.00021     0.028       2      35 ..      51      84 ..      50     105 .. 0.87
   2 ?    1.0   0.0      0.24        32     135     163 ..     173     200 ..     157     203 .. 0.77
   3 !    8.3   0.0    0.0015       0.2     112     161 ..     271     323 ..     218     344 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkigk 35
                ++iGgG  G+ a+  aa +gakV+llE + k g+
  MMETSP1174-20130828|2730_1 51 LVIGGGSGGVRASRIAAGHGAKVALLEGQLKHGA 84
                7**************************9988775 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.24
   TIGR00275 135 eeekfevet.ekkeleakkvilatGgksyp 163
                 +e ++++++ ++++++a+k+++a+Gg  +p
  MMETSP1174-20130828|2730_1 173 HEVEISLRSgGTQTVTADKILVAVGG--WP 200
                 44556666678999************..55 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0015
   TIGR00275 112 Llkelk.elgvevlteskvksi.kkeeekfevet.ekkeleakkvilatGgks 161
                 L +e+  ++gv+++ +++ k+i k+e+++++v t +++++ a++v+ atG ++
  MMETSP1174-20130828|2730_1 271 LREEMSwNSGVDLKFNTDPKEIiKNEDGTLTVITrDGESFVADQVMYATGRNA 323
                 444443278*************99999999999999**************866 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   6.5e-05    0.0086     381     415 ..      49      83 ..      35      94 .. 0.88
   2 ?    4.1   0.0     0.019       2.6     377     413 ..     222     258 ..     207     277 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.5e-05
   TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelG 415
                  +lv+GgG +G++a++ aa  G +v lle + + G
  MMETSP1174-20130828|2730_1  49 DLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83 
                 579*************************9877666 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.019
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereee 413
                 +++k++++vGgG   +e a      G +vtl+ r+++
  MMETSP1174-20130828|2730_1 222 EQPKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGDM 258
                 4569****************************99886 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   4.4e+02     283     308 ..      47      72 ..      33      81 .. 0.76
   2 ?   -4.1   0.0       8.3   1.1e+03     281     292 ..     222     233 ..     216     243 .. 0.82
   3 !   16.7   0.0   4.2e-06   0.00056     378     472 ..     289     381 ..     266     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.3
   TIGR01317 283 gkkvvviGGGdtGadcvgtslrhgaa 308
                 + +++viGGG  G      +  hga+
  MMETSP1174-20130828|2730_1  47 DYDLLVIGGGSGGVRASRIAAGHGAK 72 
                 45778999998888777777777765 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 8.3
   TIGR01317 281 akgkkvvviGGG 292
                  + k++v++GGG
  MMETSP1174-20130828|2730_1 222 EQPKRIVIVGGG 233
                 577999****99 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 4.2e-06
   TIGR01317 378 evelkkdedGkyeleevpgseevleadlvllalGfvg.peqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaar 472
                   e+ k+edG   l+ ++   e + ad v+ a G  + +e+ +l+++gv+   +g     ++ s+t++d ++a+Gd+    +l   a+ eG + a 
  MMETSP1174-20130828|2730_1 289 PKEIIKNEDGT--LTVITRDGESFVADQVMYATGRNAkTESLNLESTGVETL-KGGFIPVNEYSQTNVDNIYAVGDVTDRIALTPVALMEGHRLAD 381
                 56788999**9..88899999999**********876156669*******55.555558888999**************************98875 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.7   2.6e-06   0.00034     169     204 ..      48      83 ..      40      92 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.6e-06
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaG 204
                  D+Lv+G+G+ G+ a r Aa +Ga+v l++ q + G
  MMETSP1174-20130828|2730_1  48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83 
                 59****************************998887 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.9   0.00013     0.017       1      32 [.      48      79 ..      48      92 .. 0.93
   2 ?    2.3   0.0      0.18        24     103     153 ..     278     327 ..     270     356 .. 0.78
   3 ?   -1.9   0.0       3.4   4.5e+02     245     270 ..     337     361 ..     323     366 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                yD++v+G+G  G  a + +a  G++V+lle +
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQ 79
                9****************************965 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.18
   TIGR02032 103 eagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvak 153
                 ++g++l  +t  ++++ + e ++++v + + +++ a+ v  A+G + k+++
  MMETSP1174-20130828|2730_1 278 NSGVDLKFNTDPKEIIKN-EDGTLTVITRDGESFVADQVMYATGRNAKTES 327
                 578888888888875544.45555555555799***********9998765 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 3.4
   TIGR02032 245 evkgaliPirradektvtgnvllvGD 270
                 + kg++iP++++++ t+ +n+ +vGD
  MMETSP1174-20130828|2730_1 337 TLKGGFIPVNEYSQ-TNVDNIYAVGD 361
                 568899****6665.55677999999 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.4   0.00015     0.019     374     408 ..      49      83 ..      40      96 .. 0.87
   2 ?    1.4   0.0      0.14        19     372     405 ..     224     257 ..     190     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
   TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlG 408
                 d lv+GGG  G+ a+r+ a +G +v l e   + G
  MMETSP1174-20130828|2730_1  49 DLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83 
                 78**************************9887766 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.14
   TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasa 405
                 p  +++vGGG   +e a ++   G  vtl+ ++ 
  MMETSP1174-20130828|2730_1 224 PKRIVIVGGGFIAVEFASIMDGLGSDVTLMYRGD 257
                 6678899999999999999999999999987765 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.5     4e-05    0.0053      22      59 ..      48      85 ..      36     103 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4e-05
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59
                 D +++G+G+ G+ a+++ a +g kv++le +l  G  
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHGAP 85
                6999*****************************99864 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00012     0.016       1      55 [.      48     102 ..      48     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
   TIGR02023   1 ydvlviGggpsGaaaaetLakagievillerelarikPCGGaiPlalieefdlPe 55 
                 yd lviGgg +G  a+ + a +g +v+lle +l++  P   ai  + ++   +P+
  MMETSP1174-20130828|2730_1  48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHGAPNYSAIGGTCVNVGCVPK 102
                 799******************************9999998888777766655555 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00019     0.026       1      48 [.      48      93 ..      48     118 .. 0.83
   2 ?   -1.4   0.1      0.91   1.2e+02       2      29 ..     226     253 ..     225     256 .. 0.90
   3 ?    2.3   0.0     0.065       8.6     102     152 ..     271     321 ..     264     329 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
   TIGR00136  1 fdviviGaGhaGieaalaaarlgaktllltlnldtigklsCnPaiGGl 48
                +d++viG+G  G+ a+ +aa  gak+ ll  +l++   ++   aiGG 
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG--APNYSAIGGT 93
                689**************************9999874..4556677775 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.91
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlll 29 
                  ++++G+G   +e a ++  lg  ++l+
  MMETSP1174-20130828|2730_1 226 RIVIVGGGFIAVEFASIMDGLGSDVTLM 253
                 589**************99999999886 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.065
   TIGR00136 102 vkealenqpnlsllqeevedliledndevkGvvtkdgaklrakavilttGt 152
                 ++e+++ +  ++l  ++  + i++++d    v+t+dg+++ a++v+ +tG 
  MMETSP1174-20130828|2730_1 271 LREEMSWNSGVDLKFNTDPKEIIKNEDGTLTVITRDGESFVADQVMYATGR 321
                 6667777777777766666667777889999*****************996 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.5       0.3        40       2      31 ..      50      79 ..      49      88 .. 0.87
   2 ?    6.6   0.0    0.0056      0.74     161     205 ..     280     325 ..     270     349 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.3
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekd 31
                 +vIG+G  g+ +    a +G++v lle +
  MMETSP1174-20130828|2730_1 50 LLVIGGGSGGVRASRIAAGHGAKVALLEGQ 79
                58*****999999999999********976 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0056
   TIGR03197 161 elklhfnteitslerdaeg.WqllsengevlaasvvVlAngaqakq 205
                 ++ l+fnt+ +++ ++++g  ++ +++ge++ a++v +A+g++ak 
  MMETSP1174-20130828|2730_1 280 GVDLKFNTDPKEIIKNEDGtLTVITRDGESFVADQVMYATGRNAKT 325
                 578999*******9*99999999******************99875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.8     0.011       1.4       2      34 ..      51      83 ..      50      89 .. 0.91
   2 ?    2.0   0.0      0.16        22     221     267 ..     279     325 ..     269     353 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.011
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlG 34
                +v+GgG  G+ A    a +G++v llE + + G
  MMETSP1174-20130828|2730_1 51 LVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83
                79*************************876665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.16
   TIGR03467 221 rggevrlgtrvreleasaggiralveaaeetlaadavvlAvpperaa 267
                  g++++++t  +e+  +++g  + ++ ++e++ ad+v  A+  +   
  MMETSP1174-20130828|2730_1 279 SGVDLKFNTDPKEIIKNEDGTLTVITRDGESFVADQVMYATGRNAKT 325
                 699999********9999998888999*************9876554 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0034      0.45       1      36 [.      48      83 ..      48     107 .. 0.84
   2 ?   -0.7   0.0      0.79     1e+02     242     285 ..     279     322 ..     271     339 .. 0.85
   3 ?   -0.5   0.0      0.69        91     452     468 ..     347     363 ..     335     383 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0034
   TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvlekylipg 36
                yd +vig g gg+ ++   a +gakv +le  l  g
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQLKHG 83
                99**********988888889********9887655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.79
   TIGR02730 242 aggkirykarvtkiilendkavgvkladgekirakrivsnatrw 285
                  g ++++++   +ii+++d ++ v   dge + a +++  + r 
  MMETSP1174-20130828|2730_1 279 SGVDLKFNTDPKEIIKNEDGTLTVITRDGESFVADQVMYATGRN 322
                 5778899999999*********************9998776665 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.69
   TIGR02730 452 pfnrtaidglycvgdst 468
                  + +t +d++y vgd t
  MMETSP1174-20130828|2730_1 347 EYSQTNVDNIYAVGDVT 363
                 4789***********87 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.0     0.034       4.5       1      32 [.      48      79 ..      48     100 .. 0.89
   2 ?   -0.3   0.2      0.72        95       2      31 ..     226     255 ..     225     258 .. 0.88
   3 ?    3.5   0.0     0.051       6.7     155     199 ..     275     325 ..     265     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.034
   TIGR03364  1 tdvvvvGaGivGlahAlaaarrGlkVtviers 32
                +d++v+G+G  G+  +  aa +G kV+++e +
  MMETSP1174-20130828|2730_1 48 YDLLVIGGGSGGVRASRIAAGHGAKVALLEGQ 79
                79***************************964 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.72
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvier 31 
                 ++v+vG+G + + +A      G  Vt++ r
  MMETSP1174-20130828|2730_1 226 RIVIVGGGFIAVEFASIMDGLGSDVTLMYR 255
                 69*************999999999998866 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.051
   TIGR03364 155 Laeekgveflwntavtevets.....tvrtsrGevh.aeqvlVcsgadfet 199
                 ++ ++gv++++nt  +e+ ++     tv t  Ge + a+qv+  +g++ +t
  MMETSP1174-20130828|2730_1 275 MSWNSGVDLKFNTDPKEIIKNedgtlTVITRDGESFvADQVMYATGRNAKT 325
                 55678999999999999944446788999*******9*****999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.87u 0.22s 00:00:01.09 Elapsed: 00:00:00.65
# Mc/sec: 1053.88
//
Query:       MMETSP1174-20130828|2742_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1493.56
//
Query:       MMETSP1174-20130828|2743_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1236.93
//
Query:       MMETSP1174-20130828|2746_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 815.03
//
Query:       MMETSP1174-20130828|2744_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-81  270.1   0.0      8e-81  269.7   0.0    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    2.6e-21   74.0   0.3    9.3e-20   68.9   0.0    2.9  3  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    4.6e-16   56.7   0.0    1.7e-12   45.0   0.0    3.0  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    7.8e-09   32.4   0.8    1.4e-07   28.3   0.0    2.1  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    7.1e-07   26.2   0.0      0.019   11.5   0.0    2.9  2  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
    9.4e-07   25.7   0.1    1.6e-05   21.7   0.1    2.0  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    1.4e-06   25.2   0.0    3.9e-05   20.5   0.0    2.3  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    2.2e-05   21.2   0.0    3.5e-05   20.5   0.0    1.2  1  TIGR00551 nadB: L-aspartate oxidase
    3.8e-05   20.7   0.1    0.00016   18.6   0.1    1.8  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
    0.00015   17.5   0.2    0.00023   16.9   0.2    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00027   17.3   0.7    0.00052   16.3   0.5    1.4  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0005   17.7   0.1     0.0012   16.4   0.0    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0022   14.6   0.6      0.003   14.2   0.0    1.5  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0023   14.3   0.1     0.0035   13.7   0.1    1.2  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0043   14.1   0.1     0.0086   13.1   0.1    1.5  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0051   13.9   0.1     0.0096   13.0   0.1    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0056   13.4   0.4      0.028   11.1   0.6    1.8  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.011   13.0   2.5      0.018   12.2   1.7    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.012   12.3   0.0      0.017   11.8   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.025   11.2   0.0      0.035   10.7   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.034   10.3   0.4       0.15    8.1   0.1    1.8  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.049   10.0   0.2       0.14    8.4   0.1    1.6  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.7   0.0   4.3e-83     8e-81       1     349 [.      34     389 ..      34     391 .. 0.90

  Alignments for each domain:
  == domain 1    score: 269.7 bits;  conditional E-value: 4.3e-83
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAskaAaGmLapvaEveiaeeallrLaleSlrlypelleelkeltgldveykeeGilvvaadeddaeklreladlqsktg.leleslskealrelePelseeirgavflpedaqvdprellkaLvkaleklGveiieeve..vqeieargekvtavktsse....kvqadqvvlaaGawakellplalrpvkgeilrlevpa.ekllnrpvravvyqrqvYivPredgrlvvGAtseesgfdttvtlegvkeLledaievlPalkeaelletwaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliek 349
                 vlviGgG  Gl+vA+e+++rg    ++ ++++ ++As aA+GmLap++E    +++ l+Lal+S++ +p +l+ l+ lt         G+++     + a +   +a+++   g    ++l++  ++++eP+ls++  g++++ped qvdpr+l+ aL +a++ +Gv+i e  +  v+++ a+ + +++v+t+s+    +++  +v+la+Gaw +ellp ++ p+kg++l+l+  + + +    +r++++++ +Yi+P++dgr+vvGAt e+  +d  vt++g+++Ll+ a +v P+l+ +e+ + waGlRP  pD++P+lg+    ++  +a+G++RnGiLL P  a++++d+i++
  MMETSP1174-20130828|2744_1  34 VLVIGGGFAGLTVALEASRRGRGRVVVLSRNSSEAASFAAGGMLAPQSERL-SSGPNLDLALQSRDAWPSWLRDLEDLTPGLSDDGGVGLVSAGGFIAPAFQGDRVAEWSPPPGsGAAYWLDRVSMENMEPALSSDALGGWWFPEDMQVDPRRLMPALHQACATAGVSIVEGAAgtVTNMVAEDDVISEVRTASGlsymMHSDAHVILANGAWLRELLPVPMSPIKGQMLALRRHDsNGETPLELRRTIFSDSCYIIPKADGRVVVGATIEPGLWDRRVTVSGMQQLLNSALKVCPGLAAYEVVDSWAGLRPTAPDQKPILGRLGFFKNAHAAAGYWRNGILLGPRCAQLIMDQIDG 389
                 79*******************97555555557999***************7.***********************99985444444445555555555555666666777776666789***************************************************98743378888899999999999988665678889****************************997677888899*************************************************************************************************************987 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0     5e-22   9.3e-20       1     323 [.      33     363 ..      33     371 .. 0.79
   2 ?    2.9   0.0     0.053       9.9     345     393 ..     360     408 ..     356     415 .. 0.92
   3 ?   -3.6   0.1       5.1   9.6e+02      93     126 ..     436     469 ..     421     478 .. 0.51

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 5e-22
   TIGR03197   1 kvavIGaGiAgaalalsLarrGv.qvtllekd.eklaqgASgnrqGalypllsaddna.lsrfllaaflyarrlleqlaeagvefdhelcgvlqlavdekeaerlqklleqlklpee.llravdaeeaselagiel..pkgglffpqggwlsPpelvkallakaki...elklhfnteitslerdaeg.Wqllsengevla...asvvVlAngaqakqleqtaelplrkvrGQvshlpatek.....lsklktvlcaegYltpakqgehclGAsyerndedlelreadhaenlerlaellpalawaaevdisalqgrvgvRaasrDhLPlvGavpdaeeil 323
                 +v+vIG+G Ag+++al+ +rrG  +v +l ++ ++ a+ A g   +  + +ls+  n  l+  +++a+   +r le l++  +  d    g++      + a + ++++e++  p +  ++++d+ + +++  +    + gg++fp+   ++P++l+ al ++ ++   ++    + ++t++  +++   ++ +++g + +    ++v+lAnga +++l +   +p+++++GQ+  l  +++     l+  +t+++ + Y++p+++g+ ++GA+ e+   d+ ++ +  ++ l+   ++ p la+      +  ++++g+R++ +D+ P++G +  ++++ 
  MMETSP1174-20130828|2744_1  33 DVLVIGGGFAGLTVALEASRRGRgRVVVLSRNsSEAASFAAGGMLAPQSERLSSGPNLdLALQSRDAWPSWLRDLEDLTPGLS--DDGGVGLVSAGGFIAPAFQGDRVAEWSPPPGSgAAYWLDRVSMENMEPALSsdALGGWWFPEDMQVDPRRLMPALHQACATagvSIVEGAAGTVTNMVAEDDViSEVRTASGLSYMmhsDAHVILANGAWLRELLP---VPMSPIKGQMLALRRHDSngetpLELRRTIFSDSCYIIPKADGRVVVGATIEPGLWDRRVTVSGMQQLLNSALKVCPGLAAY-----EVVDSWAGLRPTAPDQKPILGRLGFFKNAH 363
                 599*****************986345555554044444455555555555677766651455577899999999999977754..66788888888888888888999998888765267888887776544332233789****************99888877773344445667899988888877889999998777655679*******9999988...7************9998866666677789999**********************************************8885.....5789*****************998776655 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.053
   TIGR03197 345 pgLYvllglGSRGllsapLaaelLaaqilgeplpleaellealhPaRfl 393
                 ++ ++++g+   G+l  p +a+l+  qi g+    +a+l ++ +  Rfl
  MMETSP1174-20130828|2744_1 360 KNAHAAAGYWRNGILLGPRCAQLIMDQIDGTLSDADARLFAEFSSHRFL 408
                 678889999999***********************************98 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.1
   TIGR03197  93 avdekeaerlqklleqlklpeellravdaeease 126
                 a  e+ a++++k  e+++++ + ++ v a   +e
  MMETSP1174-20130828|2744_1 436 AAAETAADEFRKSQEDNAFSWSAAEGVAATAVDE 469
                 3344444444444444444444444444444444 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   8.9e-15   1.7e-12       2     235 ..      33     284 ..      32     289 .. 0.76
   2 !    6.8   0.0    0.0035      0.66     275     336 ..     290     351 ..     285     357 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 8.9e-15
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGl.kVtvierssraaGAsvrNFGqvvvtgq..aagealelarrsreiwlelaeka.gls..vrenGslvlarteeelavl...eefaavreeae.ysvelLspaevaaklpalrldgllgglhladelrvepreaipalaeyLaee..kgveflwntavtevets....tvrtsrG...evh.aeqvlVcsgadfetLfpelfaasevrrckLqMlrvapqaelelgaalltg 235
                 dv+v+G+G  Gl  Al+a+rrG  +V+v+ r+s  + As    G+  +     ++g+ l+la++sr+ w  + +   +l+  +++ G + l++     a     + +a+   +     +  L +  + +  p + ++ +lgg +++++++v+pr+ +pal++  a++  + ve   +t+ + v +     +vrt+ G    +h  ++v+  +ga +++L+p  +  ++ ++ +L+    + ++ lel + ++++
  MMETSP1174-20130828|2744_1  33 DVLVIGGGFAGLTVALEASRRGRgRVVVLSRNS-SEAASFAAGGMLAPQSErlSSGPNLDLALQSRDAWPSWLRDLeDLTpgLSDDGGVGLVSAGGFIAPAfqgDRVAEWSPPPGsGAAYWLDRVSMENMEP-ALSSDALGGWWFPEDMQVDPRRLMPALHQACATAgvSIVEGAAGTVTNMVAEDdvisEVRTASGlsyMMHsDAHVILANGAWLRELLPVPMSPIKGQMLALRRHDSNGETPLELRRTIFSD 284
                 9*********************85799999887.578***********987335799************998776645543378888888887654433221112223333222213478899999999999.7788899**********************98876113456666777777755568889****994444566789**************999998888888877766666667777777665 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0035
   TIGR03364 275 qeedGeliiGDsHeyeaaaepFddeevdelllaeakeilglkelevverWqGvYasskeaei 336
                 +++dG +++G + e ++ +     + +++ll++ +k + gl  +evv++W+G  + +++++ 
  MMETSP1174-20130828|2744_1 290 PKADGRVVVGATIEPGLWDRRVTVSGMQQLLNSALKVCPGLAAYEVVDSWAGLRPTAPDQKP 351
                 7899*************9999999****************************9999987654 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.071        13       1      31 [.      33      63 ..      33      78 .. 0.78
   2 !   28.3   0.0   7.5e-10   1.4e-07     114     307 ..     155     346 ..     149     354 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.071
   TIGR03377  1 dvvviGGGatGaGilRDlalRglkvvLlekk 31
                dv+viGGG  G  ++ + + Rg   v++  +
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRGRVVVLSR 63
                79*******************9865555444 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 7.5e-10
   TIGR03377 114 peealrlePalnkelikavkvp.DgtvDpfrlvaanvldakehGarilt..ytkvvgliregdrvtgvkvedlktgeeeeie.aevvvnaaGaWaqeiaeladlkielvpakGvllvlnhRlnn..k.vinRlrkpsdaDilvPg.dtisllGttsekvddiddleveqeevdelldegakliPalaeaRilrafaGvRPLv 307
                   ++ ++ePal+ +  + ++ p D  vDp rl+ a   +    G  i+     +v++++ e+d +  v+  +      + ++   +v+ a GaW  e+     l + + p kG +l+l    +n  + +  R    sd+  ++P+ d   ++G t e      d +v+ + +++ll++  k++P la + ++ ++aG RP  
  MMETSP1174-20130828|2744_1 155 RVSMENMEPALSSDALGGWWFPeDMQVDPRRLMPALHQACATAGVSIVEgaAGTVTNMVAEDDVISEVRTASGLS---YMMHsDAHVILANGAWLREL-----LPVPMSPIKGQMLALRRHDSNgeTpLELRRTIFSDSCYIIPKaDGRVVVGATIEP--GLWDRRVTVSGMQQLLNSALKVCPGLAAYEVVDSWAGLRPTA 346
                 5567899*****99999999986899******9998888888999998622568************999876554...4444045899******9987.....799***********98766552221333555568888888853788999*99875..5677899999******************************65 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00023     0.043      22      72 ..      29      77 ..      11      86 .. 0.77
   2 !   11.5   0.0    0.0001     0.019     158     377 ..     159     373 ..     147     389 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   TIGR03329 22 dteadvaivGGGftGlwtaillkqaepkldvlvleadlcGaGasGrnGGcl 72
                + + dv ++GGGf+Gl  a+ + ++  + +v+vl ++     as + GG l
  MMETSP1174-20130828|2744_1 29 ALSPDVLVIGGGFAGLTVALEASRR-GRGRVVVLSRNSSE-AASFAAGGML 77
                45679**************998765.67789999887654.4777777765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.0001
   TIGR03329 158 elaaraGsarhleGlyspvaasvqpgklvrGlrrvalelGveiyertp..mtkl..eegqpavvrtpsg...kvka.ekvvlalnawmaeafrqfersiaivssdmvitekapellaktglaeGvsvldsrifvhyyrstpdGrlmlGkGGntfayagrilpvfdkpspyealltkslrkffpalaevpiaaswnGasdrsvtGlpffGkleearnvfyGfGysGnGv 377
                 e  + a s+  l G++ p    v+p +l+  l++   + Gv i e ++  +t++  e+   + vrt sg    +++  +v+la  aw+ e ++        +   m+   ++ ++  +t l+  ++++       y    +dGr+++G   +   ++ r+++     s  ++ll+ +l k+ p la  +++ sw+G    + +  p +G+l   +n     Gy  nG+
  MMETSP1174-20130828|2744_1 159 ENMEPALSSDALGGWWFPEDMQVDPRRLMPALHQACATAGVSIVEGAAgtVTNMvaEDDVISEVRTASGlsyMMHSdAHVILANGAWLRELLPVPMS---PIKGQMLAL-RRHDSNGETPLELRRTIFSDSC---YIIPKADGRVVVGATIEPGLWDRRVTV-----SGMQQLLNSAL-KVCPGLAAYEVVDSWAGLRPTAPDQKPILGRLGFFKNAHAAAGYWRNGI 373
                 445567788999*********************************8762244441134455789999874333444158999999999999886544...445677654.5566777777887777775554...556789999999999999999998875.....55566666555.68999************99999999999999999999999999999997 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   8.4e-08   1.6e-05       1      49 [.      33      79 ..      33      84 .. 0.82
   2 ?    1.7   0.0     0.099        18     151     193 ..     196     247 ..     185     256 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.4e-08
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaa 49
                dv+v+G G+AGl+ alea ++g+  vvvl +  +    +  aaggm a+
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRGRVVVLSRNSSE--AASFAAGGMLAP 79
                89***************************987664..345556666555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.099
   TIGR01813 151 skvedlikddqgqvtGvkvke.........kgkkikikaakaVvlatGGfgs 193
                 +  + ++++  g+vt +++++         +g ++ ++ + +V+la G + +
  MMETSP1174-20130828|2744_1 196 TAGVSIVEGAAGTVTNMVAEDdvisevrtaSGLSYMMHSDAHVILANGAWLR 247
                 55567777777777777777777777776677788889999*******9865 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.076        14      30      64 ..      31      64 ..      11      72 .. 0.85
   2 !   20.5   0.0   2.1e-07   3.9e-05     193     380 ..     194     385 ..     189     411 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.076
   TIGR01373 30 eydviivGgGGhGlatayylakehGitnvavlekg 64
                + dv+++GgG  Gl+ a   a   G  +v vl ++
  MMETSP1174-20130828|2744_1 31 SPDVLVIGGGFAGLTVAL-EASRRGRGRVVVLSRN 64
                569***********9886.5788899999999875 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.1e-07
   TIGR01373 193 adarGvdiiqnc..evtglikredgrviGvetsrGfiga.kkvgvavaGnsskvaelaGlrl.plesy..vlqalvseplkpi.idtvvlsnavhvyvsqsdkGelviGagidgynsyaqrGnlpileevleailelfpilsrvrllrswgGivdvspdaspiiak.tpldnlylncGwgtGGfkatpasGtvfaa 380
                   + Gv i++ +   vt+ +++ed+ +  v t+ G     +  + ++  n + + el  + + p++    +l+   s++  p+ +   + s++  +y+     G +v+Ga i+    + +r +++ +++ l++ l++ p l+   ++ sw+G+  ++pd+ pi+++ +  +n +  +G+   G    p   +++  
  MMETSP1174-20130828|2744_1 194 CATAGVSIVEGAagTVTN-MVAEDDVISEVRTASGLSYMmHSDAHVILANGAWLRELLPVPMsPIKGQmlALRRHDSNGETPLeLRRTIFSDS--CYIIPKADGRVVVGATIEP-GLWDRRVTVSGMQQLLNSALKVCPGLAAYEVVDSWAGLRPTAPDQKPILGRlGFFKNAHAAAGYWRNGILLGPRCAQLIMD 385
                 556788888765225777.44558888888888886544144456666677788888887754777651145566777778873344444444..47777778*********86.568999*******************************************98345688888888877777766666665554 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.9e-07   3.5e-05       4      51 ..      33      80 ..      30      88 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.9e-07
   TIGR00551  4 dvvviGsGaagLsaalalaekyr..vvvlskaevkesasvyaqgGiaaal 51
                dv+viG+G agL++al +++++r  vvvls++ + e a+ +a gG+ a+ 
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgrVVVLSRN-SSE-AASFAAGGMLAPQ 80
                8*****************99887769999988.444.5557778876665 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   8.7e-07   0.00016       2      43 ..      33      76 ..      32      96 .. 0.82
   2 ?   -0.6   0.0      0.58   1.1e+02     264     323 ..     185     247 ..     184     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 8.7e-07
   TIGR03378  2 DviiiGgGlaGlscalrlaeaGk.ktaiiaa.GqsalhFssGsl 43
                Dv++iGgG+aGl+ al++ ++G+ +++++++    a  F++G +
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgRVVVLSRnSSEAASFAAGGM 76
                99*******************98345555541456889998875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.58
   TIGR03378 264 RleealkrrFeklGGvllkgde..vlraeleenrvariftrnhedipleak.qfvlasGsfFs 323
                 Rl  al+++  + G  +++g +  v++   e++ ++++ t       ++++ +++la G++  
  MMETSP1174-20130828|2744_1 185 RLMPALHQACATAGVSIVEGAAgtVTNMVAEDDVISEVRTASGLSYMMHSDaHVILANGAWLR 247
                 66677888888888888887642166666889999*****99999999886367899999875 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.2e-06   0.00023     169     215 ..      32      85 ..      24      98 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGa.rvilvdeqa......eaGGsllseaetid 215
                  DvLv+G+G aGL+ A++A+r G  rv+++  ++      +aGG l  ++e++ 
  MMETSP1174-20130828|2744_1  32 PDVLVIGGGFAGLTVALEASRRGRgRVVVLSRNSseaasfAAGGMLAPQSERLS 85 
                 6********************995477666544311111246777777766665 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.5   2.8e-06   0.00052     362     413 ..      11      66 ..       5      82 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.8e-06
   TIGR03997 362 raGre.lkeavtlk..karrrkkvlvvGgGPaGleaaataarrGh.rvtllereee 413
                 raGr  +   v l+   a+ +  vlv+GgG aGl+ a +a+rrG  rv++l r+++
  MMETSP1174-20130828|2744_1  11 RAGRRtQRAVVRLQarDAALSPDVLVIGGGFAGLTVALEASRRGRgRVVVLSRNSS 66 
                 56776333444444114556689*********************758999999875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.6e-06    0.0012       2      50 ..      33      83 ..      32      99 .. 0.87
   2 ?   -3.0   0.0       5.4     1e+03     201     217 ..     288     304 ..     286     325 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.6e-06
   TIGR02032  2 DvvvvGaGpaGssaAlrlakkGl.rVlllekkelpre.keCggalskrave 50
                Dv+v+G+G aG ++Al++++ G+ rV++l +++   +  + gg+l ++++ 
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgRVVVLSRNSSEAAsFAAGGMLAPQSER 83
                9*********************879*****999988889999999888765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.4
   TIGR02032 201 vfPkgdgtanvGvgvls 217
                 ++Pk dg++ vG  + +
  MMETSP1174-20130828|2744_1 288 IIPKADGRVVVGATIEP 304
                 79999999999988765 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05     0.003       3      30 ..      33      61 ..      31     122 .. 0.82
   2 ?   -3.7   0.1       4.3   8.1e+02     132     186 ..     188     243 ..     185     248 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
   TIGR02485  3 dvlviGgGlaglCaaiearraGa.svlll 30
                dvlviGgG agl  a+ea r G   v +l
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgRVVVL 61
                8*****************88764145555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.3
   TIGR02485 132 nalyasaerlGveiryeaeveriereedgratiaarlaaa.deriatkavvlaaGG 186
                  al++     Gv i  +a+    ++ +++    ++r+a++ +  + + a v+ a G
  MMETSP1174-20130828|2744_1 188 PALHQACATAGVSIVEGAAGTVTNMVAEDDVISEVRTASGlSYMMHSDAHVILANG 243
                 57777777888888888888888888888888888885541445566666665544 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.9e-05    0.0035       1      47 [.      33      78 ..      33      92 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-05
   TIGR01812  1 DvvivGaGlAGlraAveaakkg.lkvaviskvyptRsHsvaAqGGiaa 47
                Dv+++G+G AGl  A+ea ++g  +v+v+s+     + s  A GG+ a
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGrGRVVVLSRNSSE-AASF-AAGGMLA 78
                99*******************98889999986543.3333.5577766 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   4.6e-05    0.0086       1      28 [.      33      61 ..      33      71 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpgl.rvqli 28
                D++viGgG Agl +Ale +++g  rv+++
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgRVVVL 61
                9******************8874255555 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.1e-05    0.0096      18      66 ..      28      77 ..      14      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-05
   TIGR00292 18 dyaesDviivGaGpsGLtaayylakeg.lkvvvlerklaiGGGswgGGml 66
                  +  Dv+++G+G +GLt a   +++g  +vvvl r+ +       GGml
  MMETSP1174-20130828|2744_1 28 AALSPDVLVIGGGFAGLTVALEASRRGrGRVVVLSRNSSEAASFAAGGML 77
                45678****************99999879*******************98 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.6   0.00015     0.028       1      35 [.      34      69 ..      34      76 .. 0.82
   2 ?   -1.1   0.0      0.75   1.4e+02     107     158 ..     185     243 ..     172     245 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00015
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkigk 35
                v++iGgG aGl+ A++a++  + +V++l +n++ ++
  MMETSP1174-20130828|2744_1 34 VLVIGGGFAGLTVALEASRrGRGRVVVLSRNSSEAA 69
                68*****************55668999999887665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.75
   TIGR00275 107 svldaLlkelkelgvevltes..kvksi.kkeeekfevet.ekkeleak...kvilatG 158
                  ++ aL ++++ +gv++   +   v+++  +++ + ev+t ++ ++ ++   +vila G
  MMETSP1174-20130828|2744_1 185 RLMPALHQACATAGVSIVEGAagTVTNMvAEDDVISEVRTaSGLSYMMHsdaHVILANG 243
                 67789999999999999876522588887888888999997555554431226888888 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   9.5e-05     0.018       1      27 [.      34      60 ..      34      76 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.5e-05
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtll 27
                v+v+GgG+AGL+ A+e +r+G+   ++
  MMETSP1174-20130828|2744_1 34 VLVIGGGFAGLTVALEASRRGRGRVVV 60
                79*******************643333 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.2e-05     0.017       1      36 [.      33      68 ..      33     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.2e-05
   TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36
                d++++GgG +Gl++Al+ ++++  +v +++++ +e+
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRGRVVVLSRNSSEA 68
                8******************99999999999998876 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019     0.035       1      37 [.      33      69 ..      33      85 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksaeaa 37
                dv+++Ggg +Gl++Al  sr +  ++ ++  +s eaa
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRGRVVVLSRNSSEAA 69
                89***************************99998887 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00083      0.15       2      33 ..      33      65 ..      32      75 .. 0.80
   2 ?   -0.1   0.0      0.25        47     116     155 ..     206     247 ..     193     252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00083
   TIGR00136  2 dviviGaGhaGieaalaaarlga.ktllltlnl 33
                dv+viG+G aG+  al a+r g  ++ +l  n 
  MMETSP1174-20130828|2744_1 33 DVLVIGGGFAGLTVALEASRRGRgRVVVLSRNS 65
                79*****************99863666666665 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.25
   TIGR00136 116 qeevedliledndevkGvvtkdgaklr..ak.avilttGtfLk 155
                 +++v++++ e +d ++ v t+ g ++   ++ +vil+ G++L+
  MMETSP1174-20130828|2744_1 206 AGTVTNMVAE-DDVISEVRTASGLSYMmhSDaHVILANGAWLR 247
                 4678999998.56**********9886223326999***9997 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00076      0.14     211     241 ..      30      60 ..      14      70 .. 0.79
   2 ?   -1.8   0.0      0.97   1.8e+02     273     326 ..     190     249 ..     181     253 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00076
   TIGR03140 211 ekydvlvvGgGPagaaaaiyaarkGlkvalv 241
                    dvlv+GgG ag + a+ a+r+G    +v
  MMETSP1174-20130828|2744_1  30 LSPDVLVIGGGFAGLTVALEASRRGRGRVVV 60 
                 456*********************9765555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.97
   TIGR03140 273 leehikeynidvleeq..kvkkie.teeeakevelesGev..lkaks.vivatGakWrel 326
                 l++  ++  ++++e    +v+++  +++  +ev+ +sG    +++++ vi+a Ga  rel
  MMETSP1174-20130828|2744_1 190 LHQACATAGVSIVEGAagTVTNMVaEDDVISEVRTASGLSymMHSDAhVILANGAWLREL 249
                 555555666666664311455544255566788888886511444434999999998987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.63u 0.19s 00:00:00.82 Elapsed: 00:00:00.54
# Mc/sec: 1256.34
//
Query:       MMETSP1174-20130828|2748_1  [L=1207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097    9.6   0.0       0.16    8.9   0.0    1.2  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family


Domain annotation for each model (and alignments):
>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   3.8e-05      0.16      81     119 ..     223     261 ..     212     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 3.8e-05
   TIGR00902  81 lliavalslvahvawlllvaiGlyalvfsalvpltdala 119
                  +  +a+   a   wl l+ iG +a v  a  p++ al 
  MMETSP1174-20130828|2748_1 223 KVQETAVVQNAESTWLSLIYIGRFANVAQASAPIGGALN 261
                 5566789999*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.91
# Mc/sec: 1750.67
//
Query:       MMETSP1174-20130828|2750_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   32.9   0.0    0.00086   16.8   0.0    2.1  2  TIGR00995 3a0901s06TIC22: chloroplast protein import component, Tic22 family


Domain annotation for each model (and alignments):
>> TIGR00995  3a0901s06TIC22: chloroplast protein import component, Tic22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-07   0.00086      67     124 ..      47     103 ..      21     157 .. 0.77
   2 !   14.1   0.0   1.3e-06    0.0054     177     266 ..     208     298 ..     200     302 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-07
   TIGR00995  67 altLspeevakiLaGvsvftvsdadnefvlisdadgeksiGllifrqedaeafLaelr 124
                 ++ +++eev++ L+ ++vf v+d +++ ++   + + k+i l++ + e a a   ++ 
  MMETSP1174-20130828|2750_1  47 STGMPTEEVMQKLNAIPVFSVTDGKGQSLMFKSEGDVKVIWLFL-QPEPAAAIKSQIG 103
                 4679***************************999999***9986.5566777666654 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.3e-06
   TIGR00995 177 fdGvPvfqselLvvkkknkryiPvylskedieqelskfkreskavadsqv....idvgsledvlkklelsekdsawedlifivPgkeaiqfire 266
                  + +Pvf    + +k ++k + P +ls+ed eq+     ++s    d  +    + + +l++ +  ++       +e++i ++  k+    +++
  MMETSP1174-20130828|2750_1 208 WGVIPVFTVSAMKMKIDDKEVRPWFLSREDCEQQWREAIQSSSDSPDELEslggLHMTTLDNLVDAMKST---HDMENMILVPSMKSTQYVLQQ 298
                 5668*****************************9998888877666654322237888999999999877...779998876555554444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1220.90
//
Query:       MMETSP1174-20130828|2747_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.44
# Mc/sec: 1934.84
//
Query:       MMETSP1174-20130828|2751_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|2752_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.8   0.0      0.031   11.3   0.0    1.1  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.4e-06     0.031      97     150 ..      11      67 ..       6      81 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.4e-06
   TIGR02197  97 ellelcaekevkliYASSAavYGdseeefreekelerPlNvYg...ySKllfDelvr 150
                 ++l++ ae + +++Y +  +++G+++ +f+++++++ P  +Y     SK +f +l+ 
  MMETSP1174-20130828|2752_1  11 TVLDMVAEFKNRVLYIATLGTFGRKSPGFKKDSKTASPTSTYVpkeESKNCFRNLIW 67 
                 689999************************************544479999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 978.92
//
Query:       MMETSP1174-20130828|2757_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 480.29
//
Query:       MMETSP1174-20130828|2756_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.57
# Mc/sec: 766.90
//
Query:       MMETSP1174-20130828|2758_1  [L=1276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-220  730.7  25.8    6.8e-84  280.4   1.7    7.9  6  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   1.3e-104  348.5  21.3      6e-45  151.1   2.5    6.1  6  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   9.7e-103  342.6  10.8    2.4e-39  132.9   0.8    5.1  5  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.5e-84  281.7  12.0    5.3e-33  111.7   0.9    4.1  4  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    3.5e-82  274.2  14.9      1e-22   78.0   1.8    7.0  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    6.9e-80  266.7  10.9    4.1e-33  111.9   1.5    4.4  4  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.4e-72  242.8  11.2    1.4e-24   84.1   0.0    4.1  4  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
      6e-61  204.0   1.5    7.9e-40  134.0   0.7    4.3  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    1.3e-57  193.7   9.2    4.5e-24   83.0   1.2    4.3  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    5.7e-56  187.7   7.9    3.7e-18   62.6   0.0    4.1  4  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    7.8e-42  141.6  17.9    3.1e-17   60.5   2.3    4.5  4  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    8.6e-41  138.0  19.4    7.3e-19   65.6   1.8    4.6  5  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    4.7e-37  125.1   8.0    2.5e-26   89.5   0.0    4.6  5  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    5.3e-27   92.0  11.4    4.4e-14   49.3   1.3    4.2  4  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    0.00078   16.9   0.3     0.0016   15.9   0.2    1.4  1  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   3.1e-48   8.6e-46      28     290 ..      65     367 ..      41     389 .. 0.77
   2 !  125.3   1.9   1.9e-39   5.2e-37     303     386 ..     427     510 ..     420     515 .. 0.94
   3 !  108.5   0.0   2.2e-34   6.1e-32     408     588 ..     570     789 ..     540     800 .. 0.72
   4 !   13.9   0.0   8.9e-06    0.0024     596     623 ..     915     940 ..     898     950 .. 0.82
   5 !  280.4   1.7   2.5e-86   6.8e-84     626     791 ..     967    1132 ..     957    1134 .. 0.98
   6 !   43.3   4.3   1.1e-14   3.1e-12     789     879 ..    1174    1267 ..    1166    1269 .. 0.92

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 3.1e-48
   TIGR01517  28 ledalkvleklgeaegiakklktdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslv...vgeeke...eketgwieGvailvsvllvvlvtavnDykkelqfreLn.ekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkek........LlsGtkvlegsgrmlvtavGvnsvtGklltel.........................reageeeplqlkLselasligkfGlgsavllllvlvlr 290
                     ++ +  +g+++ +  kl td ++G+ +++++ R++ yg nel + ++ ++l+l+weal+D ++++L  +av+ +    ++ +++     +  w e + il+sv++v  v+a  Dy k ++ r ++ e+k+ +k+ v R+g+ + ++ +d+vvGD+vsl +Gd++p Dg +++G+++++Des ltGe   ikk+ e         ++ Gtk+++g+   +v avG +s+ Gk+ +++                         ++++ e+pl +kL+++a  i+kfG+ +a++   ++ + 
  MMETSP1174-20130828|2758_1  65 HRKSIQAMIDVGGLSNLLLKLGTDEKKGIDPNSVTVRQEEYGVNELEDVTPPTYLELIWEALKDPIMLMLLASAVIQFLlacIPATRDpchADQIAWQEPFVILLSVFIVSNVAAGTDYTKGKELRRMKeERKHMNKLPVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEYdensknpwMIGGTKMVKGNCSFVVMAVGPHSTVGKINMQVlgltvetdegedavksddkgvvttsDDDDSESPLTKKLEKMAFDITKFGFAAAIFGACIAAII 367
                 4455566778899999***********************************************************987522234444311156789********************************945567789*****************************************************9999986432122233449*************************985542111111111111111111100000023344567777888888888888877777766666554 PP

  == domain 2    score: 125.3 bits;  conditional E-value: 1.9e-39
   TIGR01517 303 kaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigee 386
                 +  ++++lf++avti+vva+PegLPLavtlaLa ++  + k nn+v++L++CetmGsat+iCsDktGtLtqn+m+v + y+g +
  MMETSP1174-20130828|2758_1 427 DPAKIVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYVGVS 510
                 55789*************************************************************************999866 PP

  == domain 3    score: 108.5 bits;  conditional E-value: 2.2e-34
   TIGR01517 408 kgkeefiGsktetalLelvklllkdvk..ekrkeekvvk..i............ypfeserkkmsvvv.khseglRlfikGaseivlkkcekkldsn.geakeisekk.devedeienlasealRtislaykdelpe...kd.........sp........nkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltage 588
                  +  e++G+kte+ +L+l ++l +  +  e ++++  ++  +            +pf+serk+ms ++ ++++g+Rl +kGase+vl +c+++l s+ +e+ ++++++ + v+d+i+++a ea Rt+++a +d  p+   ++                   ++gl++++++Gi+dP+r +v+++++ c +aG+ vRmvtGDnl ta aia +cgil +++
  MMETSP1174-20130828|2758_1 570 SRAYEQVGNKTECGFLGLCSDLCDAGTtyEDIRKSPTFAspVqpgpvgrnnackFPFSSERKRMSWITpSQDGGFRLHCKGASEVVLARCTNVLTSDaNEVVPLTDQHlKGVNDHIQQFANEANRTLVMAIRDFPPDfadWEgiyegdgadLSsttvdyevEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEH 789
                 4566889999999999998887654330123333322221111122222222338**********998457789******************9988725678888876378*******************9995432111211111111111112222223689****************************************************9865 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 8.9e-06
   TIGR01517 596 frkdkilpklrvlaRssPlDkqlLvelk 623
                 f  d+i+p lrv+aR +P Dk +Lv+  
  MMETSP1174-20130828|2758_1 915 F--DAIWPSLRVMARCQPDDKLTLVQGL 940
                 4..68********************854 PP

  == domain 5    score: 280.4 bits;  conditional E-value: 2.5e-86
   TIGR01517  626 gevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwknilgqaayqlvvlfilefaGeelf 791 
                   +vvavtGDGtnDaPaLk+a+vGfamgi+Gt+va++a Diil+dDnf+si+ a+++GR+vy s++kf+qfqLtvn+vav la +ga++ ++spL avq+LWvnlimD La+LaLate+P+++ll+R+P+gr+ ++i+++mw n++gq++yql+ +++++f+G+ +f
  MMETSP1174-20130828|2758_1  967 AQVVAVTGDGTNDAPALKRANVGFAMGITGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQSSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPTGRNDSIITKQMWFNMIGQSIYQLAATLLILFYGHVMF 1132
                  79*****************************************************************************************************************************************************************988 PP

  == domain 6    score: 43.3 bits;  conditional E-value: 1.1e-14
   TIGR01517  789 elftivfntfvllqlfnelnaRkle.elnvfeglfknaifvaivlitlavqviivefgGaalsvvs..lsieqWllcvllgalslilgvllrli 879 
                  + ++++fn+fv++ lfn++ +Rkl+ e+n+f+g+  n+ f+ + +i +++q ++v+f G+++ + +  l+ +qW  ++l g++  ++ ++++ +
  MMETSP1174-20130828|2758_1 1174 QHYSVLFNAFVMMTLFNQFASRKLYgEVNFFDGILGNKPFIVLSVIEFVLQFFFVQFIGSVVGCYPkgLTGSQWGYSLLFGFVGWLWQLVINYV 1267
                  67899*******************7579**********************************996533899***************99998765 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.7e-22   4.7e-20      11     220 ..      80     301 ..      73     310 .. 0.83
   2 !   73.1   0.8   8.2e-24   2.3e-21     266     342 ..     431     507 ..     424     519 .. 0.95
   3 !   16.6   0.0     1e-06   0.00027     407     483 ..     622     700 ..     616     708 .. 0.87
   4 !   45.9   0.0   1.4e-15   3.8e-13     480     540 ..     725     785 ..     711     799 .. 0.91
   5 !  151.1   2.5   2.2e-47     6e-45     587     746 ..     967    1126 ..     909    1156 .. 0.91
   6 ?   -3.5   2.0       1.2   3.4e+02     761     804 ..    1178    1222 ..    1173    1235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 1.7e-22
   TIGR01522  11 etlskletdlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgni........ddavs......itlailivvtvgfvqeyrsekslealnklvpaech..liraGkeehvlasklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkksseaiealaersniaymGtlvreGkgkGivvgtGsntefGavf 220
                 + l kl td ++G+   + v+ r++ +G nel+     + + + + +  kdp++l+llasav+ +ll  i         d ++      i l+++iv  v+   +y   k l+ +++   +  +  + r+G+   + ++++v Gdlv l vGd +p d   ve  d+++des ltGe   +kk+ e  e+  +++     Gt + +G++  +v++ G +++ G++ 
  MMETSP1174-20130828|2758_1  80 NLLLKLGTDEKKGID-PNSVTVRQEEYGVNELEDVTP-PTYLELIWEALKDPIMLMLLASAVIQFLLACIpatrdpchADQIAwqepfvILLSVFIVSNVAAGTDYTKGKELRRMKEERKHMNKlpVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEYDEN--SKNPWMIGGTKMVKGNCSFVVMAVGPHSTVGKIN 301
                 556799********9.899*************86665.55566677777*****************97542222222235553333333899*********************998776665442279****************************************************9999887665..555566679**********************985 PP

  == domain 2    score: 73.1 bits;  conditional E-value: 8.2e-24
   TIGR01522 266 wlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiyt 342
                 ++++f  +v++ v aipeGlp+ vt++la+    m+k + +v+ l s et+Gs   icsdktGtlt+n+mtvt++y+
  MMETSP1174-20130828|2758_1 431 IVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYV 507
                 7889999********************************************************************96 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1e-06
   TIGR01522 407 aevpfsserkymavkv.ltdskkivfvkGateqvleyctsylkkdGk.teklteeqkekiqeeaaemaseGlrvlalas 483
                  ++pfsserk m+  +  +d     + kGa e+vl  ct  l +d +   +lt++  + ++++ ++ a+e  r l +a 
  MMETSP1174-20130828|2758_1 622 CKFPFSSERKRMSWITpSQDGGFRLHCKGASEVVLARCTNVLTSDANeVVPLTDQHLKGVNDHIQQFANEANRTLVMAI 700
                 678*********97651567778899**************99999885789********************99998885 PP

  == domain 4    score: 45.9 bits;  conditional E-value: 1.4e-15
   TIGR01522 480 alasktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGla 540
                 ++ ++ e+ l+f Gl+G+ dp r dv+ +++   ++Gv v m+tGd   ta++ia+r G+ 
  MMETSP1174-20130828|2758_1 725 TVDYEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGIL 785
                 56788899***************************************************96 PP

  == domain 5    score: 151.1 bits;  conditional E-value: 2.2e-47
   TIGR01522  587 GdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtllvfv 746 
                   +vva+tGdG ndapalk a++G amG tGt+va++a+d+il+dd+f++i++ai+ G+ +++ ++ fi+fql+  + a+sl  + +++    pl a+q+lw+n++md   + +l  ep  + +l++pp  r+d+i+tk++  +++  ++  +++tll+  
  MMETSP1174-20130828|2758_1  967 AQVVAVTGDGTNDAPALKRANVGFAMGITGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQSSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPTGRNDSIITKQMWFNMIGQSIYQLAATLLILF 1126
                  68*******************************************************************************************************************************************************9998743 PP

  == domain 6    score: -3.5 bits;  conditional E-value: 1.2
   TIGR01522  761 mtftcfvffdmfnalacrsetksv.feiGlfsnkmflyavgasll 804 
                  + f  fv++ +fn +a+r+    v f  G++ nk f++     ++
  MMETSP1174-20130828|2758_1 1178 VLFNAFVMMTLFNQFASRKLYGEVnFFDGILGNKPFIVLSVIEFV 1222
                  5799**************9876664777999**999765444444 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   3.4e-18   9.2e-16       5     171 ..     126     305 ..     122     321 .. 0.80
   2 !   70.4   1.3   6.8e-23   1.9e-20     213     287 ..     432     506 ..     427     531 .. 0.94
   3 !   36.4   0.0   1.3e-12   3.5e-10     328     451 ..     569     702 ..     540     707 .. 0.82
   4 !   48.4   0.0     3e-16   8.3e-14     446     519 ..     725     798 ..     713     834 .. 0.84
   5 !  132.9   0.8   8.8e-42   2.4e-39     532     702 ..     956    1127 ..     938    1135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 3.4e-18
   TIGR01116   5 fedllvrilllaavvsfvl.............vaalvePlvillilvlnaivGvwqernaekaiealkeleseeal..vlrdar....kakdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevk 171
                 ++d ++ +ll++av++f+l             + a+ eP+vill + + + v   ++    k +  +ke ++++ +  v+r+++    ++kd+v+Gd+v l vGd +p d  ++e + ++vd+s ltGe  +++k+ e       + ++k+  +  Gt++v+G+   vv++ G ++ +Gki+ +v 
  MMETSP1174-20130828|2758_1 126 LKDPIMLMLLASAVIQFLLacipatrdpchadQIAWQEPFVILLSVFIVSNVAAGTDYTKGKELRRMKEERKHMNKlpVYRNGEivalETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEY------DENSKNPWMIGGTKMVKGNCSFVVMAVGPHSTVGKINMQVL 305
                 5666777777778888877333333332222235899*******98888888888999999999999998877654339**9874444689******************************************998764......2345677899**************************99874 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 6.8e-23
   TIGR01116 213 iyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklv 287
                 +  f  av++ v aiPeGlP  +t  la+    mak n +v+ l s et+G +t icsdktGtlt n+m+v++l 
  MMETSP1174-20130828|2758_1 432 VQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLY 506
                 567889*****************************************************************9985 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 1.3e-12
   TIGR01116 328 dkkkvekvGeateaalkvlveklglsaaknkkslks....realacnslikkkatlefsrdrksmsvlvksn....klfvkGapeellersthillkg..savPltekakqkilaslkelssealrclalavke 451
                 +++ +e+vG+ te  +  l+  l  +++++++  ks    ++++      +    + fs +rk ms ++ s+    +l+ kGa+e +l r+t++l+++  ++vPlt++  + +  +++++++ea r+l +a+++
  MMETSP1174-20130828|2758_1 569 TSRAYEQVGNKTECGFLGLCSDLCDAGTTYEDIRKSptfaSPVQPGPVGRNNACKFPFSSERKRMSWITPSQdggfRLHCKGASEVVLARCTNVLTSDanEVVPLTDQHLKGVNDHIQQFANEANRTLVMAIRD 702
                 56789**************99999888777665444111134445555678888999*********998765344469****************99752269*****************************985 PP

  == domain 4    score: 48.4 bits;  conditional E-value: 3e-16
   TIGR01116 446 alavkeesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilssftGkefeelee 519
                 ++ ++ e  l+f+G++g++dP r +v d+i+ c +aG+ v ++tGdn  ta aia r Gil     + + el +
  MMETSP1174-20130828|2758_1 725 TVDYEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEHFHHLPELRK 798
                 566788999****************************************************8776666666654 PP

  == domain 5    score: 132.9 bits;  conditional E-value: 8.8e-42
   TIGR01116  532 hklklvelkeldqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevv.sifltaalgiealipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyvGlatvaaliwy 702 
                  ++ + + +    q+va+tGdG ndaPalk+a++G amG +Gt+va++a+d++l ddnf++i++a++ Gr +y+ +++fi++ ++ ni  v  +i+ + ++    l +vq+lWvnl+ d l + al+ +pp   +l++pp  +++++it+ +++  +   +y  +at ++l +y
  MMETSP1174-20130828|2758_1  956 KEDEGITIYPDAQVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSlAIIGAIMFQSSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPTGRNDSIITKQMWFNMIGQSIYQLAATLLIL-FY 1127
                  5555566666789*************************88***********************************************999625666667788899************************************************99888888777766554.44 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   8.4e-18   2.3e-15      23     254 ..      79     310 ..      60     318 .. 0.80
   2 !   69.9   1.6   8.8e-23   2.4e-20     295     367 ..     435     507 ..     429     521 .. 0.92
   3 !   49.5   0.0   1.2e-16   3.3e-14     452     611 ..     622     788 ..     617     792 .. 0.76
   4 !  111.7   0.9   1.9e-35   5.3e-33     684     836 ..     968    1120 ..     962    1271 .. 0.71

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 8.4e-18
   TIGR01106  23 eelerkyetdlskglsearaaellardgpnaltppkttpeyvkfarq.lfgglslllwigailcflaygiqaaeeeepsednlylg..vvlsavvivtgvfs..yyqeaksskilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspefthenpletrn.iaffstncvegtargivvstgdrtvlgriaslasglesg 254
                 ++l  k +td +kg+  + ++   +  g n l    t p y+ ++ + l   + l+l  +a++ fl  +i a+++   +++  +    v+l  v iv+ v +   y + k  + ++  ++ +  +  v r+ge ++++++++vvgdlv +  gd ip d   ++ ++++vd+s ltge     ++ e+ ++    ++n   +  t+ v+g +  +v+++g ++ +g+i     gl  +
  MMETSP1174-20130828|2758_1  79 SNLLLKLGTDEKKGIDPNSVTVRQEEYGVNELED-VTPPTYLELIWEaLKDPIMLMLLASAVIQFLLACIPATRDPCHADQIAWQEpfVILLSVFIVSNVAAgtDYTKGKELRRMKEERKHMN-KLPVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEYDEN----SKNpWMIGGTKMVKGNCSFVVMAVGPHSTVGKINMQVLGLTVE 310
                 6788899*************9999******9975.5678888887651556666666777899999999988877655554444324478888889988775225777777777776666554.56799************************************************98888888777544....3441455689***********************9888887655 PP

  == domain 2    score: 69.9 bits;  conditional E-value: 8.8e-23
   TIGR01106 295 vifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwf 367
                  +  ++i+v  +pegl  +vt++l+++   +a+ n +vk le+ et+gs+++icsdktgtltqnrmtv++l++
  MMETSP1174-20130828|2758_1 435 FVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYV 507
                 5566899***************************************************************986 PP

  == domain 3    score: 49.5 bits;  conditional E-value: 1.2e-16
   TIGR01106 452 veipfnstnkyqlsihekedasepryllvmkgaperilercssilikg..keqpldeelkeafqnaylelgglgervlgfchlylp..eeqypegfkfd.....vddvnfpve.nlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiiseg 611
                 ++ pf s  k    i     +++  + l  kga e +l rc+ +l     +  pl ++  +  ++   ++    +r l ++   +p    ++   ++ d        v++ ve +l+fvgl+ + dp r  vpd++  c  ag+ v mvtgd   ta aia   gi+ e+
  MMETSP1174-20130828|2758_1 622 CKFPFSSERKRMSWIT---PSQDGGFRLHCKGASEVVLARCTNVLTSDanEVVPLTDQHLKGVNDHIQQFANEANRTLVMAIRDFPpdFADWEGIYEGDgadlsSTTVDYEVEhGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREE 788
                 5667766666443333...3456668899****************9752145799999999999999999999999776654444411446655555541111045667777537***************************************************9875 PP

  == domain 4    score: 111.7 bits;  conditional E-value: 1.9e-35
   TIGR01106  684 aivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerl.islaygqigliqa 836 
                   +vavtgdg nd+palk+a++g amgi+g++v+++a d+il+ddnf+si+t ++ gr +++ ++k i + lt ni  ++  +i  i+    plg+v +l ++l  d + +++la e     +++r p   ++d ++ +++   +    i  + a
  MMETSP1174-20130828|2758_1  968 QVVAVTGDGTNDAPALKRANVGFAMGITGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQSSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPTG-RNDSIITKQMwFNMIGQSIYQLAA 1120
                  59*********************************************************************************999999***************************9998888887765.567666665413333333433333 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.1   1.1e-16   3.1e-14       2     129 ..     167     299 ..     166     309 .. 0.80
   2 !   73.1   1.3   1.2e-23   3.3e-21     161     236 ..     431     509 ..     428     519 .. 0.91
   3 !   12.1   0.0   3.8e-05      0.01     259     294 ..     624     662 ..     618     703 .. 0.89
   4 !   52.9   0.0   1.6e-17   4.3e-15     315     366 ..     734     785 ..     728     787 .. 0.94
   5 !    7.6   0.0   0.00086      0.24     358     389 ..     917     948 ..     911     949 .. 0.83
   6 !   78.0   1.8   3.8e-25     1e-22     385     466 ..     967    1054 ..     959    1065 .. 0.91

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1.1e-16
   TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtvlrege.keisskdlvvGDivlvkkgekvpaDgvllsgs.aevdessLtGEsnpvekkeavfagtin...fegtlklkvskiavvvktgsektplq 129
                 il+ v+++  ++a +++ + + lr++k++ +  +k  v+r+ge +  ++kd+vvGD+v+++ g+++p+Dg +++g+ +evdes LtGE   ++k+ +   +++n    +gt+ +k ++  vv++ g ++t  +
  MMETSP1174-20130828|2758_1 167 ILLSVFIVSNVAAGTDYTKGKELRRMKEERKHMNKLPVYRNGEiVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTLEYDENSKNpwmIGGTKMVKGNCSFVVMAVGPHSTVGK 299
                 778888888888888999999999999988888888888877526789**************************9549****************987777776533367888888777777777777776655 PP

  == domain 2    score: 73.1 bits;  conditional E-value: 1.2e-23
   TIGR01494 161 flkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigg 236
                 +++++++a+++lv+aiP++Lp+avt+alav+++++a    +v+ l+++e++g+ ++i+sDKTGTLT+n+m+++++++g 
  MMETSP1174-20130828|2758_1 431 IVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAklnNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYVGV 509
                 6789**************************99988744478*********************************99875 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3.8e-05
   TIGR01494 259 lefeserkrmsvivkkpkgky...vkGapevilervkkl 294
                 ++f+serkrms i  +++g +   +kGa ev+l+r++++
  MMETSP1174-20130828|2758_1 624 FPFSSERKRMSWITPSQDGGFrlhCKGASEVVLARCTNV 662
                 89***************99754449***********986 PP

  == domain 4    score: 52.9 bits;  conditional E-value: 1.6e-17
   TIGR01494 315 eellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                  +++Gl+++edplr+dv+++i+ + +ag++v m+TGDn  tA+aia ++g++
  MMETSP1174-20130828|2758_1 734 LTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGIL 785
                 589***********************************************85 PP

  == domain 5    score: 7.6 bits;  conditional E-value: 0.00086
   TIGR01494 358 aiakelglfarvsPeqKaeivellkkkgevva 389
                 ai  +l+++ar++P++K+++v+ l +++ +++
  MMETSP1174-20130828|2758_1 917 AIWPSLRVMARCQPDDKLTLVQGLMESELYTM 948
                 6677899*****************99876665 PP

  == domain 6    score: 78.0 bits;  conditional E-value: 3.8e-25
   TIGR01494  385 gevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvl 466 
                   +vva++GDG+NDapALk A+VG+a++      A+ a+di+l+ddn+s++++++k Gr++y++++k+i+++l++n++++ l+++++++
  MMETSP1174-20130828|2758_1  967 AQVVAVTGDGTNDAPALKRANVGFAMGitgtqvAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIM 1054
                  479***********************8777777*************************************************998774 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   1.9e-15   5.2e-13      19     227 ..      85     301 ..      82     381 .. 0.77
   2 !   44.8   0.2   2.7e-15   7.3e-13     305     376 ..     436     507 ..     427     525 .. 0.91
   3 !   67.2   0.0   4.8e-22   1.3e-19     487     639 ..     622     792 ..     616     800 .. 0.81
   4 !  111.9   1.5   1.5e-35   4.1e-33     692     854 ..     968    1126 ..     910    1261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.9e-15
   TIGR01523  19 lgtsltegltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsf......attd........wieggvi..savivlnvlvglvqeykaektmdslktlaspnah..virsskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkia 227
                 lgt   +g+  + +  r +e+g n led +   + +++ + + + ++++ll +a++ f      at+d        w e  vi  s+ iv nv  g   +y   k +  +k+    + +  v r++   a+++kd+v gd+v l vgd++p d  +ve  + e de+ ltge + + k  +   + ++   +          + +vkg    +v++ + +s +gki 
  MMETSP1174-20130828|2758_1  85 LGTDEKKGIDPNSVTVRQEEYGVNELEDVTPPTYLELIWEALKDPIMLMLLASAVIQFllacipATRDpchadqiaWQEPFVIllSVFIVSNVAAG--TDYTKGKELRRMKEERKHMNKlpVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEYDENSKNPWMI--------GGTKMVKGNCSFVVMAVGPHSTVGKIN 301
                 678888999999999*****************************99999999***99966655555562222333355655553356666666666..5888888888888877776644499*************************************************99998864433333332333........345556666666666666666666665 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 2.7e-15
   TIGR01523 305 iyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarrvwi 376
                 + a+++ +  ipe l   +++++av ++ m+k + +v+ le+ e++g+ t icsdktgtltq +m   ++++
  MMETSP1174-20130828|2758_1 436 VTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYV 507
                 5578888889*******************************************************9887776 PP

  == domain 3    score: 67.2 bits;  conditional E-value: 4.8e-22
   TIGR01523 487 aeypfdsevkrmavvyedqqnetytvyakgaverilercsssygs......tleepdveliikqveslaaeglrvlalaskvi.............dkddvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisd 639
                  ++pf se krm+ +   q++  + +++kga e +l rc+    s      +l++   + +  +++ +a+e  r l +a + +             d +d   t+     e  l f++l+gi dp r++   +++++ +ag+ v m+tgd   ta aia   gil  + +++
  MMETSP1174-20130828|2758_1 622 CKFPFSSERKRMSWITPSQDGG-FRLHCKGASEVVLARCTNVLTSdanevvPLTDQHLKGVNDHIQQFANEANRTLVMAIRDFppdfadwegiyegDGADLSSTTVDYEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEHFHH 792
                 57**************999998.****************86544322233389999999********************9988332222222222222344445555557899****************************************************9877665 PP

  == domain 4    score: 111.9 bits;  conditional E-value: 1.5e-35
   TIGR01523  692 kfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygiiltvvs.lasf 854 
                  + va+tgdg nd+p+lk+anvg amgi g++va++a di+l ddnf+si+ a++ gr +++ +qkf+   l+ n+  v l ++g ++ +       pl  v++lw++++  s+ ++ l  e  +  l++r+p   +  i+tk++  +++   i+  +++ l+ f
  MMETSP1174-20130828|2758_1  968 QVVAVTGDGTNDAPALKRANVGFAMGITGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQ-----SSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPTGRNDSIITKQMWFNMIGQSIYQLAATlLILF 1126
                  679****************************************************************9999999999999999977643.....35************************************************99999888764433303333 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   5.1e-27   1.4e-24       2     186 ..      93     301 ..      92     315 .. 0.87
   2 !   52.4   1.0     2e-17   5.5e-15     233     309 ..     431     507 ..     422     519 .. 0.91
   3 !   46.2   0.0   1.5e-15   4.2e-13     360     482 ..     625     785 ..     617     816 .. 0.87
   4 !   61.3   2.1   4.1e-20   1.1e-17     535     646 ..     968    1082 ..     962    1148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 5.1e-27
   TIGR01647   2 LsseeakkrlkkyGpneleekkeskllkFl.sflwnPlswvleiAaiiaialen..............weDfviilallllnatigfieeskAgnaveaLkks..lapkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekklg..di.....aysgsvvkkGEveavvvatGvntffGkaa 186
                 +  + ++ r ++yG nele+ +  ++l+ + + l +P+ ++l + a+i+++l+               w++  +il+  ++ + ++   +++ g+ +  +k++    +k  v R+g+ + le+k++v GD+v+l +Gdi+p D + veg++++vD++ ltGE ++++k l+  ++     +  g  + kG+++ vv+a G +  +Gk  
  MMETSP1174-20130828|2758_1  93 IDPNSVTVRQEEYGVNELEDVTPPTYLELIwEALKDPIMLMLLASAVIQFLLACipatrdpchadqiaWQEPFVILLSVFIVSNVAAGTDYTKGKELRRMKEErkHMNKLPVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEydENsknpwMIGGTKMVKGNCSFVVMAVGPHSTVGKIN 301
                 556778899**************999988747899*****************98999*************99999999999999999999999999999998611457888********************************************************9764212211111345999*******************9975 PP

  == domain 2    score: 52.4 bits;  conditional E-value: 2e-17
   TIGR01647 233 lreslqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideeli 309
                 +++ +  a+ +lv++iP +lp  ++ +lAv  +++ak + +vk l + E + + + +CsDktGtlt+n++++++ ++
  MMETSP1174-20130828|2758_1 431 IVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYV 507
                 5566778899**************************************************************98665 PP

  == domain 3    score: 46.2 bits;  conditional E-value: 1.5e-15
   TIGR01647 360 pfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee............veekveelAerGlRaLgvava...........................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglg 482
                 pf + +kr   +  ++ +g      kGa++v+l+ +++  + + +            v+++++++A+   R+L +a +                           + ++  +++gl+ + DP r+D  ++i+ + + gv+v+mvtGD+l  a  +a r g+ 
  MMETSP1174-20130828|2758_1 625 PFSSERKRMSWITPSQ-DGGFRLHCKGASEVVLARCTNVLTSDANevvpltdqhlkgVNDHIQQFANEANRTLVMAIRdfppdfadwegiyegdgadlssttvdyEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGIL 785
                 7888888877666555.57677778***********99877776678999999***********************99*************************9888999******************************************9999999874 PP

  == domain 4    score: 61.3 bits;  conditional E-value: 4.1e-20
   TIGR01647  535 hlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltlrivvflallililkfk.lpvllvvllallnDg.tiltiak 646 
                   +v++tGDG nDaPaLk+A+vG A+    t  A+ a Di+l++  +s i++Aik  R++++ +++++ +++++ +  v    + +++++ + l ++ ++ + l+ D+ + l++a 
  MMETSP1174-20130828|2758_1  968 QVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQSSpLGAVQMLWVNLIMDSlASLALAT 1082
                  589*********************963679*******************************************999888888999999999899998888888777525566665 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   5.9e-20   1.6e-17     131     295 ..      84     265 ..       8     286 .. 0.69
   2 !  134.0   0.7   2.9e-42   7.9e-40     388     956 ..     424    1129 ..     420    1234 .. 0.75

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.9e-20
   TIGR01657 131 lkaagesnGLtkgeiakrkelyGkneie.ikvksfleLlveevlkPfyvfqvfsvil.Wll............deyyyyallilvlsvlsivlsvk.eirkqlkelrdmvaks...qsveViRekkeetiasdelvpgDivlisrleekllpcDavLlegs.civnEsmltGEsvpvlKvpiee 295
                    + e++G++  +++ r+e yG ne+e ++ +++leL++e  + P+ ++++ s ++  ll            d+ ++   ++++lsv + +  +     ++ kelr m  +     +  V+R++++++++++++v gD+v+++   + ++pcD   +eg+ + v+Es ltGE +++ K+   +
  MMETSP1174-20130828|2758_1  84 KLGTDEKKGIDPNSVTVRQEEYGVNELEdVTPPTYLELIWEALKDPIMLMLLASAVIqFLLacipatrdpchaDQIAWQEPFVILLSVFIVSNVAAgTDYTKGKELRRMKEERkhmNKLPVYRNGEIVALETKDIVVGDLVSLT--VGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTLEYD 265
                 33455677******************96488899*************998777654412212223334344449*****99998888776665543134556677777766553337889************************..9************95388*************9974433 PP

  == domain 2    score: 134.0 bits;  conditional E-value: 2.9e-42
   TIGR01657  388 liknerskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee..................................flkevteds..sekksetlkalatchsltkledklvGDpldl.kmleavgwtleeedesaleesilavvrtedktkelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsk.......etvp......sdykevlksytreGfRvlAlaskeLp..kltlska.....qdlsRd....avEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeepekgksaqikfeskde.........................kiastkveqpvkekkdslesllasryslalsGkalavlleksk................................ellkklllkvkVfARvaPeqKeelvetlkkld.......................ytvlmcGDGaNDcgALkqAdvGisLseaeAsva...apFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliL...ylkgsklgdgQfltidllliavvalllsrskplkkLskerp...ssnllsvylllsvllqfvlvilslvllvfevk 956 
                  +++++++  +l++ ++ i+++ +P +LP++++++ +v++a ++k +      e+ ++ G   ++c DKTGTLT++ + ++ +++  ++ +                                     +  +d+     +++   ++ t  +  ++ +k     l l   l   g t+e  ++s +  s +     +  +   +   +f+Fss+ krms i   ++       +  KGa E++ +++ +       e vp      + ++  ++++++e  R l +a +  p     ++ +      dls      +vE  l+f+Gl+ +e +l++d  + i+   +a ++v m+tGDnl Ta+ +a  +gi++++++  l e    ++ k a++  +  ++                           ++      ++ ++++++   a r ++a++G  +   ++  +                                e+ + + + ++V AR +P++K +lv+ l +++                       ++v+  GDG+ND  ALk+A+vG ++     +va      +    + s + + i+ GR +   s+q F  + l   i ++s+ i+     ++s lg +Q+l+++l++ ++ +l+l+ ++p   L +++p   +++++ +++ +++++q +  ++  +l+ f  +
  MMETSP1174-20130828|2758_1  424 GNDDPAKIVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYVGVSSDKcgehharegpvsvgqqltssgadggfvqtmrdsiA--INSSDTsnLMPHKNKDGSIDTSRAYEQVGNKTECGFLGLcSDLCDAGTTYEDIRKSPTFASPV-----QPGPVGRNNACKFPFSSERKRMSWITPSQDGGF---RLHCKGASEVVLARCTNvltsdanEVVPltdqhlKGVNDHIQQFANEANRTLVMAIRDFPpdFADWEGIyegdgADLSSTtvdyEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEHFHHLPELR--KEAKFASYAKRLDENfesiftlqaemraagmtdeetelfaADSKGARGRNLPSGEYTSDPVKALRDNFAMEGSDFMKKVAVGPiphmgvdgeasqssygktigaernqagivvnpEEFDAIWPSLRVMARCQPDDKLTLVQGLMESElytmvdkvkalkedegitiypdaQVVAVTGDGTNDAPALKRANVGFAMGITGTQVAqdaCDIILMDDNFSSIITAIKYGR-NVYESVQKFIQFQLTVNIVAVSLAIIgaiMFQSSPLGAVQMLWVNLIMDSLASLALATEPPHDALLNRPPtgrNDSIITKQMWFNMIGQSIYQLAATLLILFYGH 1129
                  5677788899*********************************************************************9877655554447788888888888888888888875444444321..111111222334444445555555555555443333433133445555555544444444443.....555577777889*************99998843...489************8322222213444222111224456799****************964456665522222466655222357999*******************************************************999999876..455666665555555677******************99875566677788999999*999999999*******998888877789****************************************************99987655432111112222222233333333357899********************98877776221566777799************.56788888877777777777777765221678899*******************************999944447899999999999998876666555554433 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.7e-11     1e-08      36     148 ..     182     300 ..     130     308 .. 0.71
   2 !   52.0   0.4   4.2e-17   1.2e-14     164     271 ..     344     507 ..     325     520 .. 0.78
   3 !   27.5   0.0   1.1e-09     3e-07     375     443 ..     732     802 ..     667     814 .. 0.85
   4 !   83.0   1.2   1.6e-26   4.5e-24     430     546 ..     924    1065 ..     919    1081 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.7e-11
   TIGR01525  36 elakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGeviege.sevDesllTGEslpvekkegde.......ViaGtvnlegsleikvtkvgedstlaqi 148
                 +++k+k  ++++e  ++ ++   +++ +++++ ++++++ vgD v +  G+ ip DG  +eg+  evDes lTGE++ ++k+ + +        i+Gt   +g+  + v +vg  st+ +i
  MMETSP1174-20130828|2758_1 182 DYTKGKELRRMKEERKHMNK-LPVYR-NGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTLEYDensknpwMIGGTKMVKGNCSFVVMAVGPHSTVGKI 300
                 45555555555555555444.33444.479*******************************97369************9986332111223337777777777777777777777777766 PP

  == domain 2    score: 52.0 bits;  conditional E-value: 4.2e-17
   TIGR01525 164 rladklasyfvplvlaialltflvwlalga.......................................................lka.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvev 271
                 ++a ++++  + ++++ a +++++w +l++                                                        k+ + +++av++Lvva P +L la+++a++v+ +++ak   ++k  e+ E++ +++t++ DKTGTLT+ ++tv+++ v
  MMETSP1174-20130828|2758_1 344 KMAFDITKFGFAAAIFGACIAAIIWAILKFgmgkiiavedshshtvkqsssffskedceditleqnydddsykdtcdqfsgnddpAKIvQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYV 507
                 45555555555555666666666666555577777777777777777777777777777777777777777777777776654432236899********************************************************************9766 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 1.1e-09
   TIGR01525 375 dd.ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiidevvaellPe.dKlakv 443
                  + +++gli +eD+lr+++ + i+   ++g +v ++tGDn ++a a+A++ gi++e + + lPe  K ak 
  MMETSP1174-20130828|2758_1 732 HGlTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEHFHHLPElRKEAKF 802
                 336899*******************99**************************889899999984455555 PP

  == domain 4    score: 83.0 bits;  conditional E-value: 1.6e-26
   TIGR01525  430 vvaellPedKlakvkklqee......................egkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllpla..llavllm 546 
                  v+a + P+dKl+ v+ l e+                      ++++va+ GDG NDApAL++A+vG amg +g++va++a D++l++d+ ss+ +ai+  r++ + +++ + + l++n+va+ la++g + ++   l+++ m
  MMETSP1174-20130828|2758_1  924 VMARCQPDDKLTLVQGLMESelytmvdkvkalkedegitiypDAQVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQssPLGAVQM 1065
                  7788888888888888887688888888888888899999988889**********************************************************************************99888774444444 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.3e-20   3.7e-18      23     243 ..      81     306 ..      62     329 .. 0.77
   2 !   34.0   0.6   6.1e-12   1.7e-09     286     363 ..     434     512 ..     429     520 .. 0.88
   3 !   40.2   0.0   7.8e-14   2.1e-11     411     554 ..     623     784 ..     616     791 .. 0.81
   4 !   51.1   0.8     4e-17   1.1e-14     601     758 ..     966    1127 ..     936    1140 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.3e-20
   TIGR01524  23 llrklds.heeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt............edleavviialmvslsg.llrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavse 243
                 ll kl++  ++G+  + vt r+++yG ne+ +  +++ l ++++a ++p +++l + a++ +l             +++     +  +++ls  +++ v         + l++m +++  +  + +   ++ +  +  +++v Gd++ l+ Gd+ip d   ++ +d+ + +s ltGe + ++k  +  e   k     +  ++ Gt++v G++  vv+a G ++  G++ ++v +
  MMETSP1174-20130828|2758_1  81 LLLKLGTdEKKGIDPNSVTVRQEEYGVNELEDVTPPTYLELIWEALKDPIMLMLLASAVIQFLLacipatrdpchaDQIAWQEPF--VILLSVfIVSNVAAGTDYTKGKELRRMKEERKHMN-KLPVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNDVEVDESPLTGEPIAIKKTLEYDEN-SK-----NPWMIGGTKMVKGNCSFVVMAVGPHSTVGKINMQVLG 306
                 44556662468***************************************************99899999877774222222222..22222202222223333334567888877776654.477788888889999*********************************************9988777.44.....445778************************9998876 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 6.1e-12
   TIGR01524 286 aalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlek.hldvsGk 363
                  ++ a+++ v   pe lp+ v+ +la    +++k   +vk l++ + +G+   +c+dktGtltq+++++ + ++ vs +
  MMETSP1174-20130828|2758_1 434 LFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNlYVGVSSD 512
                 466789999999******************************************************9987646666654 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 7.8e-14
   TIGR01524 411 eipfdferrrlsvvveeaaevrrlickGaveelltvathlregg..avvalsesekeelkavteelnrqGlrvvavatkklkasead.............lsked...eeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi 554
                 + pf  er+r+s +   ++   rl ckGa e +l+ +t++ +++  +vv+l++++ + +++  +++ ++  r +++a +  +   ad              + +d   e+ l+  G+++  dp ++   ++i+  +++g+ v+++tGdn   +  i    Gi
  MMETSP1174-20130828|2758_1 623 KFPFSSERKRMSWITPSQDGGFRLHCKGASEVVLARCTNVLTSDanEVVPLTDQHLKGVNDHIQQFANEANRTLVMAIRDFPPDFADwegiyegdgadlsSTTVDyevEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGI 784
                 68*************999999******************97654228******************************99865432222222111133343222233337889*************************************8888888887777 PP

  == domain 4    score: 51.1 bits;  conditional E-value: 4e-17
   TIGR01524  601 eGhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvlvasafipflpmlalhlliqnllyd.vsqlalpfdkvdkeflkkprkweakdlgrfllfiGpv.ssifdia.tfllmwy 758 
                  +  +v   GdG ndapal+ a+vG ++  + +++a++a+diil++ ++  +  ++  Gr+++  + k+++   + n + v   ++ + +    p+ a+ +l  nl+ d ++ lal  +      l++p    +  +    +++  +  si+++a t+l+++y
  MMETSP1174-20130828|2758_1  966 DAQVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQSSPLGAVQMLWVNLIMDsLASLALATEPPHDALLNRPPTGRNDSIITKQMWFNMIgQSIYQLAaTLLILFY 1127
                  56899********************99747899***********************************************999999999999*************9986799*****999999999998888887777777777763699998724555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   3.6e-09     1e-06      90     168 ..     214     300 ..     193     308 .. 0.83
   2 !   42.0   2.6   4.3e-14   1.2e-11     212     282 ..     435     505 ..     431     516 .. 0.95
   3 !   17.7   0.0   9.9e-07   0.00027     359     408 ..     735     784 ..     712     807 .. 0.85
   4 !   60.5   2.3   1.1e-19   3.1e-17     428     520 ..     967    1059 ..     954    1080 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.6e-09
   TIGR01511  90 dveelqvgdilkvkpgekipvDGvvveGe.sevdeslltGEslpvkkkvgde.......viaGtvngegsllvkvtkvgedtllaqi 168
                 + +++ vgd + ++ g+ ip DG  veG+  evdes ltGE++++kk+ +         +i+Gt   +g+  + v +vg ++++ +i
  MMETSP1174-20130828|2758_1 214 ETKDIVVGDLVSLTVGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTLEYDensknpwMIGGTKMVKGNCSFVVMAVGPHSTVGKI 300
                 56899***********************7369*************997542212233448899999999999999999988888887 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 4.3e-14
   TIGR01511 212 levavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtev 282
                 +++avt+l++a P +l LA+ l+++v+ + +ak   ++k  e+ e++ +++t++ DKTGTLT+ +++vt+ 
  MMETSP1174-20130828|2758_1 435 FVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNL 505
                 789*****************************************************************986 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 9.9e-07
   TIGR01511 359 elaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                 + ++++ +ed l+ ++ + i+   ++g+ v ++tGDn ++a a+A++ gi
  MMETSP1174-20130828|2758_1 735 TFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGI 784
                 5678999******************************************9 PP

  == domain 4    score: 60.5 bits;  conditional E-value: 1.1e-19
   TIGR01511  428 ekkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYNviaipiAagvlvpiglllsP 520 
                  +++va+ GDG+NDapaL +a+vg a+g +gt+va++a d++l++d  ++++tai+  r++++ +++ + + l+ N++a+ +A+   + ++   sP
  MMETSP1174-20130828|2758_1  967 AQVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDnFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMFQ--SSP 1059
                  6899**********************868**************75389**********************************86655444..344 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   7.9e-10   2.2e-07      62     112 ..     211     262 ..     161     310 .. 0.67
   2 !   35.5   3.3   3.6e-12   9.8e-10     181     255 ..     431     505 ..     428     509 .. 0.95
   3 !   14.7   0.0   7.6e-06    0.0021     310     364 ..     730     783 ..     673     802 .. 0.85
   4 ?   -2.2   0.0      0.99   2.7e+02     367     384 ..     924     941 ..     923     945 .. 0.86
   5 !   65.6   1.8   2.7e-21   7.3e-19     379     471 ..     963    1055 ..     950    1076 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 7.9e-10
   TIGR01512  62 eeVaveelkvgdvvvVkkGervPvDGevlsge.ssldesalTGEsvpvekak 112
                 +  +++++ vgd v +  G+ +P DG+ ++g+  ++des lTGE++ ++k  
  MMETSP1174-20130828|2758_1 211 VALETKDIVVGDLVSLTVGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTL 262
                 3446789********************88876379***********998853 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 3.6e-12
   TIGR01512 181 lvssllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdv 255
                 +v+ +++a+++Lvva P +L ++v++al+ + ++ a+   ++k  +  e++++++t+  DKTGTLT+++++v+++
  MMETSP1174-20130828|2758_1 431 IVQLFVTAVTILVVAIPEGLPLAVTLALAVSQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNL 505
                 678899*****************************************************************9986 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 7.6e-06
   TIGR01512 310 valdekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                 v    +++gli ++D +r+d+ + i+   ++gv  + ++tGD+ ++a ++a++ G
  MMETSP1174-20130828|2758_1 730 VEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGV-DVRMVTGDNLRTAIAIASRCG 783
                 55566899************************7.66****************999 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.99
   TIGR01512 367 vhaellPedKveivkelk 384
                 v a ++P+dK++ v+ l 
  MMETSP1174-20130828|2758_1 924 VMARCQPDDKLTLVQGLM 941
                 789***********9875 PP

  == domain 5    score: 65.6 bits;  conditional E-value: 2.7e-21
   TIGR01512  379 ivkelkevamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgvlpl 471 
                  i  + + va+ GDG NDapaL++A+vg amG +g++va ++ D++l++d+ s++ +aik +r++ + v++ + + lt+ +v++ la++g +  
  MMETSP1174-20130828|2758_1  963 IYPDAQVVAVTGDGTNDAPALKRANVGFAMGITGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTVNIVAVSLAIIGAIMF 1055
                  55567789999******************************************************************************9865 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00017     0.046      57     122 ..     168     236 ..     135     245 .. 0.70
   2 ?   -2.6   0.3      0.63   1.7e+02     761     807 ..     277     322 ..     277     325 .. 0.91
   3 !   18.7   0.0   2.3e-07   6.2e-05     346     393 ..     470     517 ..     405     572 .. 0.80
   4 !   89.5   0.0   9.2e-29   2.5e-26     516     683 ..     624     796 ..     623     840 .. 0.81
   5 !    8.2   0.6   0.00033      0.09     771     846 ..     969    1045 ..     964    1072 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00017
   TIGR01652  57 LavvllvtaiKeaie.....DirrrksDkevNnkkvevleesakfkeikwkdlkVGdivkvkkdeeiPaDl 122
                 L+ v +v+ +  + +     ++rr+k++++  nk+    ++ ++ +  + kd+ VGd+v +  ++ iP+D 
  MMETSP1174-20130828|2758_1 168 LLSVFIVSNVAAGTDytkgkELRRMKEERKHMNKLPV-YRN-GEIVALETKDIVVGDLVSLTVGDIIPCDG 236
                 4444444444444431112256777777766665543.443.69**************************6 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.63
   TIGR01652 761 vklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasD 807
                 +k+vk + s v++a+g  +  V+ i +  +G+ ++  EG+ Av++ D
  MMETSP1174-20130828|2758_1 277 TKMVKGNCSFVVMAVGPHS-TVGKINMQVLGLTVETDEGEDAVKSDD 322
                 58999999*******9876.6**********************9987 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.3e-07
   TIGR01652 346 asvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkle 393
                  +v+ ++  e +G   +i SDKTGTLTqN m+   + ++  s ++  +
  MMETSP1174-20130828|2758_1 470 NMVKVLESCETMGSATTICSDKTGTLTQNRMTVTNLYVGVSSDKCGEH 517
                 56677777899*********************9998887665555444 PP

  == domain 4    score: 89.5 bits;  conditional E-value: 9.2e-29
   TIGR01652 516 leFnSsrKRmsvivrlpddellLlcKGADsvifkrlse...........esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseemellvike 683
                 ++F+S+rKRms i   +d+  +L cKGA  v++ r  +            +++ l+ ++ h++++a+e  RTLv+a r++   ++ +w+  ye   + l+        v   +E+ L+ +g  +iED L ++Vp++i l  +Ag+ + ++TGD   TAi+i+  c +l+ee   ++ + 
  MMETSP1174-20130828|2758_1 624 FPFSSERKRMSWITPSQDGGFRLHCKGASEVVLARCTNvltsdanevvpLTDQHLKGVNDHIQQFANEANRTLVMAIRDFPP-DFADWEGIYEGDGADLSS-----TTVDYEVEHGLTFVGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGILREEHFHHLPEL 796
                 69******************************9998777776655555545666777888999****************975.7*********98877764.....4555679*******************************************************99876554433 PP

  == domain 5    score: 8.2 bits;  conditional E-value: 0.00033
   TIGR01652  771 vtlaigdGaNDVsmiqeAdvG..vGisGkEGkqAvmasDfaigqFrfLekLl.LvHGrwsYkRisklilyffyknlila 846 
                  v+   gdG+ND   ++ A+vG  +Gi+G+  + A  a D+ +   +f + +  +  Gr+ Y+ + k i++ +  n++ +
  MMETSP1174-20130828|2758_1  969 VVAVTGDGTNDAPALKRANVGfaMGITGT--QVAQDACDIILMDDNFSSIITaIKYGRNVYESVQKFIQFQLTVNIVAV 1045
                  45556****************44577765..5678899*99987776655542578***************99998865 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.1e-12   5.9e-10      29     186 ..     125     285 ..     122     309 .. 0.71
   2 !    4.6   0.4    0.0055       1.5     252     317 ..     437     501 ..     425     517 .. 0.70
   3 !    5.4   0.0    0.0031      0.85     438     485 ..     737     784 ..     721     818 .. 0.77
   4 !   49.3   1.3   1.6e-16   4.4e-14     507     598 ..     966    1059 ..     941    1081 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.1e-12
   TIGR01497  29 alrnpvmfvvwvGslvtllvtiapalfgtkgknlrlfnaivtgilfitvlfanfaeavaeGrgkaqadalkktkke..tlakl.lskdgaikkvpadelkkGdvvlveaGdvipadGevieGv.asvdesaitGesapvlkesGgdfas....vtGGtrivsdwlv 186
                 al++p+m+++   +++  l++  pa+      +   ++    +il        +   va G   ++ + l+++k+e   + kl +  +g+i  ++++++  Gd+v +  Gd+ip+dG  +eG    vdes +tGe   + k    d  s    + GGt++v     
  MMETSP1174-20130828|2758_1 125 ALKDPIMLMLLASAVIQFLLACIPATRDPCHADQIAWQEPF-VILLSVF----IVSNVAAGTDYTKGKELRRMKEErkHMNKLpVYRNGEIVALETKDIVVGDLVSLTVGDIIPCDGHFVEGNdVEVDESPLTGEPIAIKKTLEYDENSknpwMIGGTKMVKGNCS 285
                 57899999999999999999988887655444433333333.2332223....3445666666666666666665411355544889***********************************7368*********9999887766666533336899999876544 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0055
   TIGR01497 252 vlvallvalipttiGGlls.aiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrla 317
                 + v++lv+ ip  +   ++ a+ +     +a++n +     + e+ G   t+  dktGt+t  nr++
  MMETSP1174-20130828|2758_1 437 TAVTILVVAIPEGLPLAVTlALAV-SQASMAKLNNMVKVLESCETMGSATTICSDKTGTLTQ-NRMT 501
                 456777888887654222212222.334577888888888999*****************96.5554 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0031
   TIGR01497 438 yGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                 +G+i + d ++  + + +    + G+   m+tGdn  ta +ia   G+
  MMETSP1174-20130828|2758_1 737 VGLIGIEDPLRDDVPDSIRLCFNAGVDVRMVTGDNLRTAIAIASRCGI 784
                 677777777777777777777889********************9998 PP

  == domain 4    score: 49.3 bits;  conditional E-value: 1.6e-16
   TIGR01497  507 eGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqllitrGalttfsia.ndvakyfaiipaifaaaip 598 
                  + ++va+tGdGtndapal +a+vg am  +Gtq a++a++++ +d + + +i  ++ G+++  +   +  f ++ n va  +aii ai+  + p
  MMETSP1174-20130828|2758_1  966 DAQVVAVTGDGTNDAPALKRANVGFAMGiTGTQVAQDACDIILMDDNFSSIITAIKYGRNVYESVQKFIQFQLTvNIVAVSLAIIGAIMFQSSP 1059
                  5789***********************759*****************************************996377899*******9877765 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   5.9e-06    0.0016     203     236 ..     966     999 ..     948    1017 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.9e-06
   TIGR00099 203 slenviaiGDseNDieMleaagvgvamgnaneel 236
                 + + v++ GD+ ND++ l+ a+vg+amg   +++
  MMETSP1174-20130828|2758_1 966 DAQVVAVTGDGTNDAPALKRANVGFAMGITGTQV 999
                 56778999*******************9766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.71u 0.23s 00:00:01.94 Elapsed: 00:00:01.32
# Mc/sec: 1275.89
//
Query:       MMETSP1174-20130828|2755_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.95    4.8   4.5        1.3    4.4   3.1    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.1   0.00031       1.3     952    1003 ..     168     219 ..      84     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00031
   TIGR00927  952 aenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                   e++g  +      +g  + dGGd ++  +++ e+ee  + ee+ e+e  en
  MMETSP1174-20130828|2755_1  168 NEDHGARRRSLSVSHGARNQDGGDQDDLTQDQREQEEHSQLEEDHEQEHYEN 219 
                  45555555555556778899******99999999888888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 1975.12
//
Query:       MMETSP1174-20130828|2760_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1666.97
//
Query:       MMETSP1174-20130828|2761_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1847.85
//
Query:       MMETSP1174-20130828|2762_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.9   0.9        0.8    7.9   0.3    2.5  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family
     0.0059   14.8   1.1        1.9    6.8   0.1    2.6  2  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00083       1.7      23      45 ..     162     184 ..     153     188 .. 0.70
   2 !    7.9   0.3   0.00039       0.8       7      17 ..     199     209 ..     195     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00083
   TIGR04165  23 kfddehkaeaevgeikCskCGyv 45 
                   + +  +  ++ ++ C++CGy 
  MMETSP1174-20130828|2762_1 162 SVITQEAQLDSIAQMSCQECGYT 184
                 5555444447788999******4 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00039
   TIGR04165   7 lkkCPkCGskD 17 
                 +++CP CGs+D
  MMETSP1174-20130828|2762_1 199 KQRCPLCGSVD 209
                 689******99 PP

>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0015       3.2      18      37 ..     165     184 ..     157     189 .. 0.79
   2 !    6.8   0.1   0.00091       1.9       3      14 ..     201     211 ..     200     224 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0015
   TIGR03655  18 eddldeveivaveCktCgas 37 
                 +++ +   i++++C++Cg++
  MMETSP1174-20130828|2762_1 165 TQEAQLDSIAQMSCQECGYT 184
                 566677788999******96 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00091
   TIGR03655   3 pCPFCGgadvsl 14 
                 +CP CG+ d+ +
  MMETSP1174-20130828|2762_1 201 RCPLCGSVDF-F 211
                 7******999.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 794.33
//
Query:       MMETSP1174-20130828|2764_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 868.08
//
Query:       MMETSP1174-20130828|2763_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-29   98.4   0.6    7.9e-29   97.7   0.4    1.4  1  TIGR03636 L23_arch: archaeal ribosomal protein L23
  ------ inclusion threshold ------
      0.017   11.7   0.1      0.039   10.4   0.0    1.5  2  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR03636  L23_arch: archaeal ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.4   3.9e-32   7.9e-29       1      77 []      74     150 .]      74     150 .] 0.98

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 3.9e-32
   TIGR03636   1 plvtEKalkliekenkltfiVdrkatKkdikeaveklfdvkVekvntlitpkgeKkAyvkLkeekkAeeiasrlGvl 77 
                 pl+tE a+k ie++n+l fiVd ka+K++ik+av +++d++ +kvntli p+g+KkAyv+L+++++A ++a+r+G++
  MMETSP1174-20130828|2763_1  74 PLTTESAMKKIEDNNTLVFIVDVKANKRQIKQAVTNMHDIQCQKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 150
                 789************************************************************************96 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.9e-05     0.039      97     154 ..      17      76 ..       7      95 .. 0.85
   2 ?   -0.7   0.0     0.046        94     334     370 ..      92     128 ..      75     137 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.9e-05
   TIGR01137  97 seekvdvlkalGaeivrtPtaaafdsPesyigvakrl..ekeipgavildqyanasnPla 154
                 s+   +v k  G+  v+t t+++f +P+s  +v k l  ++ +p    ld+y+  + Pl+
  MMETSP1174-20130828|2763_1  17 SKAASQVSKGAGSRNVKTHTKVHFYKPKSLQQVKKPLysRRSVPKGSGLDKYHIIKCPLT 76 
                 56667899999************************9944579***********9999985 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.046
   TIGR01137 334 vfgnarvkdlalkalvtvketetvadaieilrekGfd 370
                    +++ ++ ++k+ vt  ++++++++  ++r  G +
  MMETSP1174-20130828|2763_1  92 FIVDVKANKRQIKQAVTNMHDIQCQKVNTLIRPDGQK 128
                 3456677778899999999999999988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.67
# Mc/sec: 295.50
//
Query:       MMETSP1174-20130828|2766_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 973.10
//
Query:       MMETSP1174-20130828|2765_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 809.83
//
Query:       MMETSP1174-20130828|2767_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 349.59
//
Query:       MMETSP1174-20130828|2769_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|2768_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 354.12
//
Query:       MMETSP1174-20130828|2770_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.23s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|2773_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 531.84
//
Query:       MMETSP1174-20130828|2775_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 204.72
//
Query:       MMETSP1174-20130828|2771_1  [L=825]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.13s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 1785.10
//
Query:       MMETSP1174-20130828|2774_1  [L=970]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-06   24.1   0.0    1.7e-05   22.0   0.0    1.9  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0078   13.9   0.0       0.16    9.5   0.0    2.2  2  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.5e-09   1.7e-05      38     149 ..     752     879 ..     746     896 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 8.5e-09
   TIGR01934  38 ekeekvlDvatGtGdlaielakkae...akvtgvDlseemLevakkkakek.eeanvefiead...........aeeLpfed.nsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpkn 149
                 +k+++ + v +Gt++ +  +  +++   +kv +vDls+++Le+ak +++       v  +ead           a+ L ++   ++d+vt+++ l  +   ++aL+ ++  l  gg+l +++f+k++ 
  MMETSP1174-20130828|2774_1 752 RKPKTWVSVGCGTARDIEYVVDHIKacgTKVYLVDLSPDLLEMAKTRVEGLgLGDLVVCVEADiltaydkngkpAQGLDLPPlGTVDVVTCSYCLTMIPPWAQALDAMVALLADGGTLGLVDFTKRSD 879
                 47788899*****977666666666688********************9877655566555552222222233366677654379**************************************99865 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.019        38     180     227 ..     381     430 ..     368     437 .. 0.87
   2 !    9.5   0.0     8e-05      0.16      32     137 ..     751     876 ..     741     895 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.019
   TIGR02072 180 litlsFedvlevlrslKkvGannlsqks..rlltrkklkalleryeqefe 227
                 +++ +F+ ++ ++ +lK    ++l   +  +++ ++++k ++e+y++  +
  MMETSP1174-20130828|2774_1 381 IVACDFNVAQLAMLELKLACIKHLDYDRffEIWAKSNYKVFQENYKSVLR 430
                 567889999999**************99966**************98766 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 8e-05
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpq..aelialDiseemleqakkkls......nvqficgdieklplekks..............fDlivSnlalQWlddlsevlaelarvlkpgGllafstfgk 137
                 +++p+++  +GcGt+   + + + +++   +++++D+s+  le+ak++++       v ++++di ++   +k+              +D+++++ +l  +   +++l+ +  +l  gG l + +f k
  MMETSP1174-20130828|2774_1 751 QRKPKTWVSVGCGTARDIEYVVDHIKAcgTKVYLVDLSPDLLEMAKTRVEglglgdLVVCVEADILTAY--DKNgkpaqgldlpplgtVDVVTCSYCLTMIPPWAQALDAMVALLADGGTLGLVDFTK 876
                 56889999*******77777777776522457**********************774455555554444..433446777778888889999999999999999999999999999999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.76
# Mc/sec: 1684.60
//
Query:       MMETSP1174-20130828|2778_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-15   54.1   3.2    5.9e-09   33.6   0.1    3.1  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    6.4e-14   48.6   4.9    1.2e-13   47.8   3.4    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    8.5e-11   40.3   0.5    3.4e-05   22.3   0.0    2.9  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    1.5e-10   38.8   3.9    0.00057   17.5   0.3    3.2  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    7.3e-08   30.3   0.0    1.5e-07   29.3   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    6.6e-06   22.4   1.1    0.00018   17.6   0.1    2.1  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    2.1e-05   21.8   0.0    3.6e-05   21.0   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.6e-05   20.8   0.0    8.5e-05   19.9   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    6.8e-05   19.5   1.8     0.0018   14.8   0.3    2.3  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0096   13.3   4.9        2.6    5.3   0.1    3.8  4  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.019   12.4   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.4e-05     0.013      24      98 ..      84     157 ..      65     162 .. 0.88
   2 !   33.6   0.1   1.6e-11   5.9e-09      22      97 ..     191     266 ..     180     271 .. 0.90
   3 !    8.6   0.0   0.00073      0.27      58     101 ..     261     304 ..     258     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.4e-05
   TIGR02521  24 kkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnn 98 
                 ++d  ++++ +v  a e +  g++ekA    e A++++ + ad +  lA  + ++ + e A +++++A+++  ++
  MMETSP1174-20130828|2778_1  84 SNDLLQTRESYVIRAEELFSDGAFEKAATLYERAVNAE-ETADGHVFLAETLVRVSRAEDAIKHYERAVEMYSDE 157
                 56778889999999999******************875.7899**************************997765 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 1.6e-11
   TIGR02521  22 skkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpn 97 
                 +   +  ++a+++vq a++ l+++++++A   le+A  + p  a a++ lA  + ++g+ ekA ++++k ++  p 
  MMETSP1174-20130828|2778_1 191 QPGVETPEIADAHVQVAMSLLQSQQYHEAVTHLETATSIVPTLAAAHMLLANCFRDMGQPEKAIARYKKVVKYRPR 266
                 555667789************************************************************9998886 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00073
   TIGR02521  58 leldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 +++ p d    +a+++   +lg+ ++A + +rkAl+++p   dv
  MMETSP1174-20130828|2778_1 261 VKYRPRDFIGLSAMGFTHHELGNYKQALNIYRKALAVTPTAQDV 304
                 677777777789**************************998876 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   3.4   3.1e-16   1.2e-13     128     339 ..      94     312 ..      81     322 .. 0.65

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 3.1e-16
   TIGR02917 128 lalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvd...AllLkgdlllssgnieeAlaayrkaielkpnaiaallal.....atilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAaiq 339
                 +++r+   +  g +e+A   +e A ++++  ++  + lA  ++   + ++a +  +++++ + ++++   Al   g+l+   g  ++A+ + r+++e++p  + +++a      a +ll+ +++ eA ++++++  ++p    a+ l A      ++ e+A+   ++++k  p  +++l   G ++ +lg+++qA +  +++l+ +P  + ++ ++Aa q
  MMETSP1174-20130828|2778_1  94 YVIRAEELFSDGAFEKAATLYERAVNAEE-TADGHVFLAETLVRVSRAEDAIKHYERAVEMYSDEREkmsALVSIGKLQTDIGRLDLAVLSSREVLEMQPGVETPEIADahvqvAMSLLQSQQYHEAVTHLETATSIVPTLAAAHMLLANCFRDMGQPEKAIARYKKVVKYRPRDFIGLSAMGFTHHELGNYKQALNIYRKALAVTPTAQDVKYVVAALQ 312
                 55666666667777777777777766554.4567777777777777777777777777776655433222666667777777777777777777777776665555444111114456777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777666666654 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   9.1e-08   3.4e-05       5     111 ..      94     196 ..      90     204 .. 0.87
   2 !   15.8   0.1   9.3e-06    0.0035      38     105 ..     199     263 ..     194     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 9.1e-08
   TIGR02795   5 eykaallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                 +  +a +++ +g ++kA++ +++ +    + + +++ + +l+e+l++ +  +dA+k+++ +v+ y+++     al+ +g+++ ++g+ + A    +ev +  P+ + 
  MMETSP1174-20130828|2778_1  94 YVIRAEELFSDGAFEKAATLYERAV----NAEETADGHVFLAETLVRVSRAEDAIKHYERAVEMYSDEREKMSALVSIGKLQTDIGRLDLAVLSSREVLEMQPGVET 196
                 5567888889999999998888766....57899*****************************************************99999999999888887665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 9.3e-06
   TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikr 105
                  ++A+  ++ +l++ ++y++A ++ +++++  p+    + a + l++++ ++gq ekA + +++v+k 
  MMETSP1174-20130828|2778_1 199 IADAHVQVAMSLLQSQQYHEAVTHLETATSIVPTL---AAAHMLLANCFRDMGQPEKAIARYKKVVKY 263
                 6899999999*****************99987765...34445589*******************986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00064      0.24      29      85 ..     102     157 ..      89     191 .. 0.65
   2 !   17.5   0.3   1.5e-06   0.00057      52     114 ..     200     262 ..     194     267 .. 0.83
   3 !   12.2   0.0   6.3e-05     0.023      56      91 ..     272     307 ..     261     316 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00064
   TIGR02552  29 yqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                 ++ g +e+A++l++  + ++ t    ++ La++l + ++ e+Ai+ Y++a+ ++ d+
  MMETSP1174-20130828|2778_1 102 FSDGAFEKAATLYERAVNAEETADG-HVFLAETLVRVSRAEDAIKHYERAVEMYSDE 157
                 5555555555555554444444333.3336666666666666666666666555444 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.5e-06
   TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                 a+ ++  a++l + ++y eA+   + a+++ +  ++++  +a+c+  +g++e+A +  k +++
  MMETSP1174-20130828|2778_1 200 ADAHVQVAMSLLQSQQYHEAVTHLETATSIVPTLAAAHMLLANCFRDMGQPEKAIARYKKVVK 262
                 667778899999999999999999999999999999999999999999999999888777776 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 6.3e-05
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyh 91 
                  +++ ++++l++y++A+++Y  a+a+++ + ++ y 
  MMETSP1174-20130828|2778_1 272 SAMGFTHHELGNYKQALNIYRKALAVTPTAQDVKYV 307
                 57899*********************9988877775 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0     4e-10   1.5e-07      32     133 ..     391     492 ..     368     498 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 4e-10
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdiekl..plekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                 + +   vLd+GcG G+   + +   + +  + +D+s+  +eqa +    ++  ++d+  +  +++ +s+Dl++++ ++  + dl+e++  +a++l++gG++a++
  MMETSP1174-20130828|2778_1 391 SDQWLDVLDLGCGRGAAGHEFRGLANRM--TGIDLSKLAIEQAAQPGVYDELSHADLLVVirSFVPESMDLVIACDSIPYFGDLNEIIPLIAKLLRSGGVFALN 492
                 566779*********9999999888887..*************9998888888888765433788999*********************************986 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.1    0.0053         2     100     165 ..     105     169 ..      94     213 .. 0.70
   2 !   17.6   0.1   4.9e-07   0.00018      65     159 ..     212     307 ..     189     331 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0053
   TIGR03939 100 kqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlr 165
                 + ++kA++ly+++ + + + +d+ + la tl+  ++ e+A k+ ++++e +++++e ++al  + +
  MMETSP1174-20130828|2778_1 105 GAFEKAATLYERAVNAE-ETADGHVFLAETLVRVSRAEDAIKHYERAVEMYSDEREKMSALVSIGK 169
                 57899999999999988.889999999999999999999999999999999988888877765443 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4.9e-07
   TIGR03939  65 Wagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlea 159
                   ++  e+++  e++ s+v++ a +   lA+ +R+ +q +kA++ y+k+ +  P++  +l+++  t  + g++++Al+  +++ + +p+++++ + 
  MMETSP1174-20130828|2778_1 212 QSQQYHEAVTHLETAtSIVPTLAAAHMLLANCFRDMGQPEKAIARYKKVVKYRPRDFIGLSAMGFTHHELGNYKQALNIYRKALAVTPTAQDVKYV 307
                 345556666666666666666666666666666666666666666666666666666666666666666666666666666666666655544443 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.8e-08   3.6e-05      46     150 ..     390     490 ..     346     495 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.8e-08
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilf 150
                  + + l vlD+GcG G     +  l   +tgiDls+ +ie A +    d+l + +  +  +  ++ e   s D+v+a + +    dl+ei+  +a+ll++gg+  
  MMETSP1174-20130828|2778_1 390 ASDQWLDVLDLGCGRGAAGHEFRGLANRMTGIDLSKLAIEQAAQPGVYDELSHADLLV-VIRSFVPE---SMDLVIACDSIPYFGDLNEIIPLIAKLLRSGGVFA 490
                 3335789*******************************************98666544.56666555...69*****************************9865 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.3e-07   8.5e-05      24     133 ..     358     471 ..     338     490 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.3e-07
   TIGR02021  24 eevsrvrqtvreGreamrekllewlpkd.slkG....kkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle.gkfDavvalDvlihYpa 133
                 +  ++v+  + +G ++m+++++e +     ++       vlD GCG G    e+     +++++D+s+  +e+a +     +   + +  v  ++s   +  D v+a D++ ++ +
  MMETSP1174-20130828|2778_1 358 NLFQQVHGLIFQGLAKMMRTMVEQVMGMnHISAsdqwLDVLDLGCGRGAAGHEFRGLANRMTGIDLSKLAIEQAAQPGVYDE-LSHADLLVV-IRSFVpESMDLVIACDSIPYFGD 471
                 334667778999******999988764445544111157******************************9*99887654444.344444443.56655599*********999865 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   4.7e-06    0.0018     444     573 ..     102     231 ..      93     240 .. 0.80
   2 ?    3.6   0.0     0.012       4.4     345     408 ..     248     311 ..     228     323 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.7e-06
   TIGR00990 444 yklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelkpisvnvlPlink.alalfrtkedfieaekllekalild.Pesdiavitlaqlllqqekvdealklferaaelar 573
                 +  g ++++ +l+ ra+ + +e+ d + + ae l+  +  ++a+++++ a+e+  +     ++ l  i+k  + + r       + ++le    ++ Pe   a + +a  llq ++  ea++++e a+ +  
  MMETSP1174-20130828|2778_1 102 FSDGAFEKAATLYERAV-NAEETADGHVFLAETLVRVSRAEDAIKHYERAVEMYSDERE-KMSALVSIGKlQTDIGRLDLAVLSSREVLEMQPGVEtPEIADAHVQVAMSLLQSQQYHEAVTHLETATSIVP 231
                 55688999999999997.679999****************************9765544.344445566625667777777888888888766554399999***********************9987765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.012
   TIGR00990 345 gkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraql 408
                 g++e+a a  +k +   Pr       +     elg+ ++a + + kal+  +   d+ y  a l
  MMETSP1174-20130828|2778_1 248 GQPEKAIARYKKVVKYRPRDFIGLSAMGFTHHELGNYKQALNIYRKALAVTPTAQDVKYVVAAL 311
                 5555555555555555555444444455555555555555555555555555555555544433 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.29   1.1e+02      31      59 ..      89     117 ..      67     127 .. 0.82
   2 ?    2.6   0.0     0.045        17     184     221 ..     142     179 ..     121     194 .. 0.70
   3 !    4.9   0.1    0.0091       3.4      37      96 ..     204     260 ..     190     267 .. 0.74
   4 !    5.3   0.1    0.0069       2.6      47     110 ..     248     308 ..     244     318 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.29
   TIGR03302  31 esaeelYeeaeeelekgnykeAikkfeel 59 
                 ++ e++  +aee +++g +++A++ +e+ 
  MMETSP1174-20130828|2778_1  89 QTRESYVIRAEELFSDGAFEKAATLYERA 117
                 56677778999999999999999999975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.045
   TIGR03302 184 AAinRfeevlenYpdtpateealarlveayqklglkee 221
                  Ai+ +e+++e Y+d ++   al  + +  +++g+ ++
  MMETSP1174-20130828|2778_1 142 DAIKHYERAVEMYSDEREKMSALVSIGKLQTDIGRLDL 179
                 46677777777777777777777777666666665555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0091
   TIGR03302  37 YeeaeeelekgnykeAikkfeelesrypfseyaeqaqLdlayayYksgeyeeAlaaadrF 96 
                  + a++ l++++y eA++ +e+  s  p+    + a + la +   +g+ e+A+a +++ 
  MMETSP1174-20130828|2778_1 204 VQVAMSLLQSQQYHEAVTHLETATSIVPTL---AAAHMLLANCFRDMGQPEKAIARYKKV 260
                 567888999999999999998888877764...456677778888888888888888765 PP

  == domain 4    score: 5.3 bits;  conditional E-value: 0.0069
   TIGR03302  47 gnykeAikkfeelesrypfseyaeqaqLdlayayYksgeyeeAlaaadrFiklyPnhedvdyal 110
                 g+ ++Ai++++++ ++ p   +   a   +++ +++ g+y++Al+ +++ + + P+ +dv+y++
  MMETSP1174-20130828|2778_1 248 GQPEKAIARYKKVVKYRPRDFIGLSA---MGFTHHELGNYKQALNIYRKALAVTPTAQDVKYVV 308
                 67788888888888877766555444...79*******************************95 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05     0.019      16      87 ..     396     468 ..     385     487 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5e-05
   TIGR02081  16 rvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGv..eviqqdldegLeafedksfDvvvlsqtlqa 87 
                  vLDlGcG G+  + +r     + +G+++++ ++ ++++ Gv  e  ++dl   +  f  +s D+v+   ++  
  MMETSP1174-20130828|2778_1 396 DVLDLGCGRGAAGHEFRG-LANRMTGIDLSKLAIEQAAQPGVydELSHADLLVVIRSFVPESMDLVIACDSIPY 468
                 59*********9999965.455779*****************555889999999************98877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.21s 00:00:00.80 Elapsed: 00:00:00.60
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|2776_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1258.30
//
Query:       MMETSP1174-20130828|2780_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 136.39
//
Query:       MMETSP1174-20130828|2779_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1090.85
//
Query:       MMETSP1174-20130828|2784_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 722.64
//
Query:       MMETSP1174-20130828|2782_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-100  332.6   0.0   5.1e-100  332.4   0.0    1.0  1  TIGR00658 orni_carb_tr: ornithine carbamoyltransferase
    1.7e-36  123.7   0.0      2e-36  123.5   0.0    1.0  1  TIGR00670 asp_carb_tr: aspartate carbamoyltransferase
      3e-32  110.2   0.4    2.8e-29  100.4   0.3    3.0  1  TIGR03316 ygeW: probable carbamoyltransferase YgeW


Domain annotation for each model (and alignments):
>> TIGR00658  orni_carb_tr: ornithine carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.4   0.0  3.7e-103  5.1e-100       1     303 [.      10     316 ..      10     317 .. 0.97

  Alignments for each domain:
  == domain 1    score: 332.4 bits;  conditional E-value: 3.7e-103
   TIGR00658   1 rhllslldlseeelkellelakklkkekkkgkeekklkgktlaliFekrstRtRvsfevaayelGaqvlylnkeelqlgrkesikDtarvlsryvdaivvRvykhedveelakyasvPvingLtdlehPcqilaDlltikeklg..klkevklvyvGDa.nnvanslllaaaklGldvvvatPeg..lepeaeivkkakkiakenggkleltedpkkavkdadviytDvwvsmGe.eekkeerlkllkpyqvneellelakpevkflhCLPavrGeevtdevlegeasivfdeaenRlhaqkavlkall 303
                 rhl ++ dls+ e++ +l+la+++k++       + l++ktl ++Fek+s RtRvs+e+++++lG++++   + ++ +g ke+++Dt  vlsr+vda+++Rv  +e+v  la+++++P++n+L d++hP+q+laD++t+ e++g  +l +v+l++ GD  nnv+ +l+ a+  +G+dv+v++P g  ++p++e++++++ ++ke+ggk ++ e  ++av++ad++y D w+s G   e++++r+ +l pyqv+ +l+++a p++ f+ CLPa+rGee t ev++g++sivfd+aenRlhaqka+l+ l+
  MMETSP1174-20130828|2782_1  10 RHLTKISDLSRTEIRGILQLAADMKQSPAD--YGNALSQKTLLMLFEKASLRTRVSLETGMTQLGGHAIAYMSADSPVGVKETFEDTGAVLSRMVDAVTARVSTREKVVGLASNSTIPIVNALDDHAHPMQMLADMQTMSERKGtfDLTGVRLAFTGDIqNNVTYDLMRAGCIMGMDVRVTGPTGdiFKPDPEVLQECEILSKEYGGKATVYEVAEEAVAGADFVYADSWMSYGIsGEERNKRFSQLLPYQVTADLMKHAAPDAWFMNCLPAMRGEEQTAEVMDGPQSIVFDQAENRLHAQKALLVKLM 316
                 89************************9988..6899************************************************************************************************************88889*********99***********************876589*********************************************86788899***************************************************************9887 PP

>> TIGR00670  asp_carb_tr: aspartate carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.5e-39     2e-36       1     303 [.      10     316 ..      10     317 .. 0.89

  Alignments for each domain:
  == domain 1    score: 123.5 bits;  conditional E-value: 1.5e-39
   TIGR00670   1 rhlisiedlsreeielllekaeelkqklsskekskalkgkivaalFfEpSTRTrlSFetaakrlggsvvnlsdseasSvaKgEtlaDTikvleaysvdiiviRhrlegaarliaevaevpviNaGdGknqHPtQtLLDlyTileefg..rldglkvalvGDlkygRtvhSlvkaLalfgvevylvaPee.Lrlpk.eileel....kkkgvkvketesleevleeaDvlyvtRiQkERlpdleeleklke..aykitkerlealkkevkvlHPlPvnrvdeiesevldtekaklfkQaknGvavRmallelll 303
                 rhl++i+dlsr ei+ +l+ a+ +kq+  +    +al++k + +lF  +S RTr+S et + +lgg+ +   + + s v   Et+ DT  vl+ + vd++  R +++     +a+++ +p++Na d  ++HP Q L D+ T+ e+ g  +l g+++a+ GD+++  t   l++a  ++g++v + +P   +  p+ e+l+e     k+ g k +++e  ee+++ aD +y        ++ +e  +++++   y++t++ +++++ ++ ++  lP  r+ e + ev+d +++ +f Qa+n +    all  l+
  MMETSP1174-20130828|2782_1  10 RHLTKISDLSRTEIRGILQLAADMKQSPADY--GNALSQKTLLMLFEKASLRTRVSLETGMTQLGGHAIAYMS-ADSPVGVKETFEDTGAVLSRM-VDAVTARVSTREKVVGLASNSTIPIVNALD-DHAHPMQMLADMQTMSERKGtfDLTGVRLAFTGDIQNNVT-YDLMRAGCIMGMDVRVTGPTGdIFKPDpEVLQECeilsKEYGGKATVYEVAEEAVAGADFVYADSWMSYGISGEERNKRFSQllPYQVTADLMKHAAPDAWFMNCLPAMRGEEQTAEVMDGPQSIVFDQAENRLHAQKALLVKLM 316
                 89*************************9998..569********************************99887.8999*****************.**********999999999999*******9.699*****************88889**********99755.678999999**********7413333325666541222567889999**************9988888888766666665552269******************************************************98877 PP

>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.3   2.1e-32   2.8e-29       4     355 ..      10     313 ..       7     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 2.1e-32
   TIGR03316   4 kdllllwektrdeleavldvaaalkalraenistkllesglgislfrdnstrtrfsfasalnllGleaqdldegksqiahGetvretaevisfladaiGirddmylgvGnaymrevakaldegykdgvleqrialvnlqcdidhptqaladiltlrekfGslenlkGkkvaltwayspsygkplsvpqgiiglmtrlGmdvtlahpeg..yellpevvevakknaaesGgkfrkvnsmeeafkdadivyakswapiavmekrtelytasdteGlellekellaqnkkykdwecteelmkltkdgealymhclpadisGvsckegevteevldkyrvviykeasyklyviaalil 355
                 ++l  + + +r e+  +l++aa++k+  a+    + l +++ ++lf   s rtr s ++++++lG++a+      s ++  et  +t  v+s++ da+  r ++         + v+ a          ++ i++vn   d  hp q lad+ t+ e+ G++ +l G ++a+t     + +  l      +   + +Gmdv ++ p g  ++  pev +     ++e Ggk +  +  eea+  ad vya sw  +            s +e  + +         +   +++t +lmk +   +a +m clpa  +G      e t+ev+d++++ ++++a+++l+  +al++
  MMETSP1174-20130828|2782_1  10 RHLTKISDLSRTEIRGILQLAADMKQSPADY--GNALSQKTLLMLFEKASLRTRVSLETGMTQLGGHAIAYMSADSPVGVKETFEDTGAVLSRMVDAVTARVSTRE-------KVVGLA---------SNSTIPIVNALDDHAHPMQMLADMQTMSERKGTF-DLTGVRLAFTGDIQNNVTYDL------MRAGCIMGMDVRVTGPTGdiFKPDPEVLQECEILSKEYGGKATVYEVAEEAVAGADFVYADSWMSYG----------ISGEERNKRFS--------QLLPYQVTADLMKHAA-PDAWFMNCLPAM-RGE-----EQTAEVMDGPQSIVFDQAENRLHAQKALLV 313
                 5777788899***************988764..56799***************************************************************98882.......223333.........3589****************************65.799****99988776655555......45555589*****9998755777899*************************************9988..........33334444444........445689*******999.99*********8.887.....99*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1173.24
//
Query:       MMETSP1174-20130828|2781_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.8   1.0      0.095    9.4   0.4    1.7  2  TIGR00464 gltX_bact: glutamate--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.012        49     154     182 ..      16      46 ..      11      49 .. 0.81
   2 ?    9.4   0.4   2.3e-05     0.095     295     332 ..      48      85 ..      40      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.012
   TIGR00464 154 vsfnDlvrgeiklenseld..dlvilksdgl 182
                  sf+  ++ +ik+++++ +  d v++  d++
  MMETSP1174-20130828|2781_1  16 ASFEKFLHDRIKVNGKAGNlgDAVVINRDKT 46 
                 689999*******998644449999999986 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 2.3e-05
   TIGR00464 295 rvskspalfdlkkLkwlNkeylkelkdeellellkphl 332
                  ++ + + f+ ++Lk+l k+ylk+++  ++l+ + +  
  MMETSP1174-20130828|2781_1  48 IIVTAETPFSKRYLKYLTKKYLKKQQLRDYLHVVATLK 85 
                 57788999******************999998876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 403.73
//
Query:       MMETSP1174-20130828|2783_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.53
# Mc/sec: 1703.41
//
Query:       MMETSP1174-20130828|2785_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1174-20130828|2787_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.60
# Mc/sec: 1361.69
//
Query:       MMETSP1174-20130828|2788_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 560.06
//
Query:       MMETSP1174-20130828|2790_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 644.86
//
Query:       MMETSP1174-20130828|2791_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|2792_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-46  154.6  15.2    1.3e-45  153.9  10.5    1.3  1  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9  10.5   3.1e-49   1.3e-45       1     275 []      49     344 ..      49     344 .. 0.92

  Alignments for each domain:
  == domain 1    score: 153.9 bits;  conditional E-value: 3.1e-49
   TIGR00932   1 llaavlivllarrlripsvvgeliaGvilGpsglglisnselvnllaelGvilLlFliGLeldlerlkkllkkalgvgvlqvlvsf.....vllalllshllglkle...................lavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasvsaekekvalvllllkvllaflllvllvkyllrpvlrltaeadrselatalsLllvlgsalladllGlsmalGAFlAGvvlseseyrhkleeklepikygvliplFFisvGlsld 275
                 l+a+v++ + a++l+  +++ +l++G  lGp gl++ sn+e+  +l ++Gv++LlF  GLe ++er+k+l +  l +g+ q+ v+      ++la+++  +lg  +e                    a+v++++ +lss a++  vL+e++  + +aG +  ++l++qDlav ++L++l+++++  +++ +++l +l+ k+ + f ++++++ ++l++v+r++a a+++e ++al+ l+++g+ ++a+ lGl    GAF AGv+l+++++r ++++++ p++ g+l+++FF+++G ++d
  MMETSP1174-20130828|2792_1  49 LAASVIVTPTAKKLNTNPILLYLLLGATLGPHGLNVFSNTEADIELGDFGVLFLLFAEGLEASPERIKSLVA-FLSTGLSQLGVTTalftaAILAVSSNGVLGGLTEsvekliplnsgyvdisnpnEALVLALAATLSSSAFIFPVLEEKGWGERPAGVAGKATLLLQDLAVAPVLVILPFVLG-AQNSDPASLSILIGKATVGFGAVLVAGSFILKRVFRAVADAEATESFVALVVLVAVGMGIIAKQLGLTDTAGAFAAGVLLANTNFRAQIQADIVPFE-GILLGIFFMTTGANFD 344
                 6799***************************************************************99764.56666666666652222255555555555555559***************************************************************************8.6889999******************************************************************************************.************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.53
# Mc/sec: 2099.37
//
Query:       MMETSP1174-20130828|2793_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.5   1.0      0.014   13.4   0.7    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.7   3.5e-06     0.014      89     136 ..      23      70 ..       5      79 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-06
   TIGR02894  89 LqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksv 136
                 +++++++  + e++++e+++  +++++lqk   eL+k +e l++++ +
  MMETSP1174-20130828|2793_1  23 FKTINRHSRSCERFQQERDEAVASIKKLQKFDGELQKANEGLQEESDI 70 
                 478888999*********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|2795_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1059.8   2.3          0 1059.5   1.6    1.0  1  TIGR00484 EF-G: translation elongation factor G
    2.3e-96  321.3   2.6    2.4e-40  136.2   0.1    3.1  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.1e-67  226.5   5.5      1e-35  120.9   0.0    3.2  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.3e-53  180.1   0.1    3.5e-27   92.8   0.0    3.1  3  TIGR01393 lepA: GTP-binding protein LepA
    3.1e-52  175.5   0.9    6.6e-52  174.4   0.6    1.4  1  TIGR00503 prfC: peptide chain release factor 3
    3.5e-32  109.3   0.1    7.1e-32  108.3   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    5.3e-15   52.9   0.7    2.8e-14   50.5   0.0    2.3  3  TIGR00485 EF-Tu: translation elongation factor Tu
    5.9e-14   49.2   0.5    3.6e-12   43.3   0.1    2.4  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.6e-11   41.5   1.9    5.2e-11   39.8   0.4    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    1.9e-09   34.6   0.6    5.9e-08   29.7   0.0    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.4e-08   30.1   0.2    3.7e-05   20.8   0.0    2.2  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    4.8e-05   19.8   0.4    0.00068   16.0   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
     0.0028   14.5   0.0     0.0074   13.1   0.0    1.7  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.015   12.3   1.0      0.034   11.2   0.1    2.0  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1059.5   1.6         0         0       2     690 ..      53     750 ..      52     751 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1059.5 bits;  conditional E-value: 0
   TIGR00484   2 artvdleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffe.edkgekaeekei.....PedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedtekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee...gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiiekkk 690
                  r ++lek+rniGi+ahidaGktttterilfytgk++kigevhdG atmdwmeqe+erGititsaatt++wkd++in+idtPGhvdft+everslrvldGavav+d vaGvepqsetvwrqa+ky+vPr+ f+nkmd++Ga+f+++v+ +ks ld  +  +qlpiG e +f+Gvidlv+++a+ +  ed g++++e ++     Pedlk++a+e++e lve v+e+de+ + +yleG+e +++++kk+ir+g++a+ +vpv+ G+afknkGvq lldav dy+PsP dv+aik++   ++++ie+ +sd epf+alafkv+tdpfvg ltf rvysGvl+sGs v+ns+k k+ervgr+++m an+r e++e raGdi+al+GlkdtttG+tlcd+  +vile+m+fpePvi++avePktkad +kmg al +la edP+f+   dee+gqt+i+GmGelhl+iivdr++ref+ve nvG+Pqv+yre+i++++e++++++kqsGG Gqy +++i++eP++e   ++ +ef ++ikGGv+Preyip v+kG+e  l sG++aG+Pv+ +++tl dG yhdvdss +af++a+ +a +e+ +k    l+eP+m+v+v++Peey+Gd+lGd+s+rrg++e   er+++k++ a+vPl +mf y ++lrs+++Gra ysm++ +y+ vP +v +e+++k+k
  MMETSP1174-20130828|2795_1  53 GRSTSLEKYRNIGIMAHIDAGKTTTTERILFYTGKTYKIGEVHDGGATMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGADFYNAVSMIKSMLDSVPAVIQLPIGNEADFKGVIDLVNMNAIEWLaEDLGASFIETPLaewdgPEDLKAKAQEYHEALVELVVEQDEDALMEYLEGNEPDVATLKKCIRTGTIANAFVPVTTGTAFKNKGVQPLLDAVNDYMPSPLDVEAIKGTMMGSDEPIERISSDSEPFAALAFKVMTDPFVGTLTFARVYSGVLQSGSSVYNSVKGKNERVGRMLQMNANDRTEVKEARAGDIVALVGLKDTTTGETLCDKAGAVILEKMDFPEPVIKVAVEPKTKADMQKMGEALVRLAGEDPSFRFSRDEETGQTVIEGMGELHLEIIVDRMRREFNVECNVGAPQVSYREAITRECEIDYTHKKQSGGSGQYARIKIRFEPKDEeseNDDFEFAEQIKGGVVPREYIPGVQKGVESVLGSGPIAGFPVLGMRATLLDGAYHDVDSSVMAFEIAGRMATREGLRKGGGRLMEPMMQVDVVTPEEYMGDILGDISSRRGMVEELGERGNTKTIAAMVPLGNMFQYVSTLRSMSKGRAAYSMKLARYELVPPNVEKELVAKFK 750
                 5899*************************************************************************************************************************************************************************************87899999888765455559***********************99999***********************************************************************************************************************************************************************************************************************************************************************************************99877789**********************************************************************************************************************************************************************9976 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.6e-35   4.6e-33      17     151 ..      59     191 ..      55     211 .. 0.90
   2 !  136.2   0.1   8.2e-43   2.4e-40     244     474 ..     325     547 ..     315     578 .. 0.87
   3 !   71.8   0.1   2.4e-23   6.9e-21     560     711 ..     600     749 ..     570     753 .. 0.91

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 1.6e-35
   TIGR00490  17 efirnigivahidhgkttlsdnllagagmise..elageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrl 151
                 e  rnigi+ahid gktt ++ +l  +g   +  e+      +d+ eqeqergiti++a  +       +++ in+idtpghvdf  +v r++r +dga+ v + v gv pq+etv rqa k  v  + fink+dr 
  MMETSP1174-20130828|2795_1  59 EKYRNIGIMAHIDAGKTTTTERILFYTGKTYKigEVHDGGATMDWMEQEQERGITITSAATTCFW----KDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRT 191
                 678********************9877765443388888999**************999877654....7999**************************************************************96 PP

  == domain 2    score: 136.2 bits;  conditional E-value: 8.2e-43
   TIGR00490 244 qvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgtsp 474
                 q +ld v  ++psp + ++ +        + s++    + +d e p+a++  k++ d+  g ++ +r+ysg ++ gs vy   + + +r+ ++  +   +r ev e  ag+iva+vglk++++get+c+ +  +  +e ++ + epv+ va+e k   d+ k+ e l ++a edp+ +   +eetg+ +i gmgelhleiiv+++r++++ve +++ p v yre++t ++ 
  MMETSP1174-20130828|2795_1 325 QPLLDAVNDYMPSPLDVEAIKG-----TMMGSDEPIERISSDSE-PFAALAFKVMTDPFVGTLTFARVYSGVLQSGSSVYNSVKGKNERVGRMLQMNANDRTEVKEARAGDIVALVGLKDTTTGETLCDKAGAV-ILEKMD-FPEPVIKVAVEPKTKADMQKMGEALVRLAGEDPSFRFSRDEETGQTVIEGMGELHLEIIVDRMRREFNVECNVGAPQVSYREAITRECE 547
                 6678888889999988665443.....34557777777888865.99*********************************9999999999999988999******************************98876.467765.79**********************************************************************************98765 PP

  == domain 3    score: 71.8 bits;  conditional E-value: 2.4e-23
   TIGR00490 560 ilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvkev 711
                 + +g ++ + +gp+a  +v+g++  l+d   h+  v         a r++ ++ l +    l+ep+ +v + +p+++mg ++ +i++rrg + e+ + g+  ti a vp+ +mf +  ++r+ ++gra +s++ a +e vp ++ +elv + 
  MMETSP1174-20130828|2795_1 600 VQKGVESVLGSGPIAGFPVLGMRATLLDGAYHD--VDSSVMAFEIAGRMATREGLRKGGGRLMEPMMQVDVVTPEEYMGDILGDISSRRGMVEELGERGNTKTIAAMVPLGNMFQYVSTLRSMSKGRAAYSMKLARYELVPPNVEKELVAKF 749
                 67899*************************997..555666666799*****************************************************************************************************9875 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   3.5e-38     1e-35       1     149 [.      61     211 ..      61     278 .. 0.90
   2 !   83.9   0.2   5.3e-27   1.6e-24     196     394 ..     360     547 ..     347     550 .. 0.90
   3 !   22.8   0.1   1.7e-08   5.1e-06     387     471 ..     654     737 ..     649     748 .. 0.90

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 3.5e-38
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeevee..rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelga 149
                 +rni i+ah+D Gktt  +++L  +g   +  ev++    mD  + e+erGiti + +t+  +kd +ini+DtPGh Df  ever l ++dg++ + D + G+ pq   v ++a ++g   +  ink+Dr+ a+  + v+++  ++ ++ a
  MMETSP1174-20130828|2795_1  61 YRNIGIMAHIDAGKTTTTERILFYTGKTYKIGEVHDggATMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGADFYNAVSMIKSMLDSVPA 211
                 59********************999988888888774479**********************************************************************************************99999998888877665 PP

  == domain 2    score: 83.9 bits;  conditional E-value: 5.3e-27
   TIGR01394 196 dkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkeidgkkle 394
                 ++ ep+ +l  ++ +d ++G ++ +rv++G++++g++v       k ++ r+ ++l++++ +r+e++ea+aGdiva++Gl+d++ get++d+  a  l+ ++  eP +++ ++  +         k   +k+ + L r + ++ ++r +  ee+ +  ++G GeLhl i+++ mrre   e +v+ P+v ++e   +++e
  MMETSP1174-20130828|2795_1 360 SDSEPFAALAFKVMTDPFVGTLTFARVYSGVLQSGSSVYNSV---KGKNERVGRMLQMNANDRTEVKEARAGDIVALVGLKDTTTGETLCDKAGAVILEKMDFPEPVIKVAVEPKT---------KADMQKMGEALVRLAGEDPSFRFSRDEETGQTVIEGMGELHLEIIVDRMRREfNVECNVGAPQVSYREAITRECE 547
                 56799*******************************997654...457899**********************************************************9998765.........4455677778888888899*********************************5579**********998776666 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 1.7e-08
   TIGR01394 387 eidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyepl 471
                 +  g+ +eP+ ++ + +pee++g ++  +++r+g ++++ ++g+    +  ++P   ++ + +++ ++++G +  +    +ye +
  MMETSP1174-20130828|2795_1 654 KGGGRLMEPMMQVDVVTPEEYMGDILGDISSRRGMVEELGERGNT-KTIAAMVPLGNMFQYVSTLRSMSKGRAAYSMKLARYELV 737
                 556899*************************************95.568889*********************999999999865 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   1.2e-29   3.5e-27       2     150 ..      60     206 ..      59     218 .. 0.89
   2 !   57.2   0.0   7.3e-19   2.2e-16     185     382 ..     360     549 ..     351     569 .. 0.81
   3 !   26.3   0.0   1.7e-09   4.9e-07     398     476 ..     659     735 ..     649     743 .. 0.91

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 1.2e-29
   TIGR01393   2 kirnfsiiahidhGkstladrllektk...avserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieevi 150
                 k rn+ i+ahid Gk+t ++r+l +t+    + e +    ++d ++ e+erGiti + a +  +k+     +++n+idtPGhvdf+ ev rsl   +Ga+ + d + Gve q+ +    a +  +  +  ink+d   ad  +  + i+ ++
  MMETSP1174-20130828|2795_1  60 KYRNIGIMAHIDAGKTTTTERILFYTGktyKIGEVHDGGATMDWMEQEQERGITITSAATTCFWKD-----HQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGADFYNAVSMIKSML 206
                 679********************887621146667777789***********************74.....68****************************************998889999999999*******99999888877777665 PP

  == domain 2    score: 57.2 bits;  conditional E-value: 7.3e-19
   TIGR01393 185 dkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklkdgevie 382
                 ++++p  al f  + d++ G +++ rv++G +++g  +    +gk+ +v ++  ++ +  ++ +e +aG+   ++a +  +kd+  G+t+ + +   +  l+     +pv+  ++ P  ++d++++ +al +l+ +d s+ + ++  +  G     G +G lhle+i +r+ ref+++  + aP+v+y+   + + +i 
  MMETSP1174-20130828|2795_1 360 SDSEPFAALAFKVMTDPFVGTLTFARVYSGVLQSGSSVYNSVKGKNERVGRMLQMNANDrTEVKEARAGD---IVA-LVGLKDTTTGETLCDKA--GAVILEKMDFPEPVIKVAVEPKTKADMQKMGEALVRLAGEDPSFRFSRDEET--GQTVIEG-MGELHLEIIVDRMRREFNVECNVGAPQVSYREAITRECEID 549
                 5668999********************************9999999999876555544424555555555...554.44688999***997655..555677777789**********************************988654..5555444.7*****************************98777665555 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 1.7e-09
   TIGR01393 398 veePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyr 476
                 + eP++++ +++peey+g il  + ++rg++++l   + ++ ++   +Pl++ ++++   l+s+skG a++  +l++y+
  MMETSP1174-20130828|2795_1 659 LMEPMMQVDVVTPEEYMGDILGDISSRRGMVEELGERG-NTKTIAAMVPLGN-MFQYVSTLRSMSKGRAAYSMKLARYE 735
                 68********************************9998.56789999****9.589**************999988875 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.6   2.3e-54   6.6e-52       8     464 ..      58     534 ..      55     554 .. 0.79

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 2.3e-54
   TIGR00503   8 vdkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdei..ylyesGkgstikav.....rvvkaldd..peldaavGedlaqelrde.lelveeasaefd..keavlaGel....tpvffGtalgnfGvdllldallqyaakpeardsdtrt..........veaaeekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtq.GeklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGav.qvlrsldendlivaavGvlqfdvvvarlkeeynveavyesv 464
                 ++k r++ i++h daGktt te++l+y +   + G v+       a+ dwme e++rGi+it++     ++d  +n++dtpGh df+ +  r+l   d a+ v d   Gve ++  +   +    +p + f+nk+dr   d  + +  ++  l+   a i+ piG    fkGv +l++ +   +l e   g++  ++     +    l+    e + a+ e ++++ +d  +e +e+   +    k+ + +G +     pv  Gta++n Gv+ llda+ +y + p   ++ ++t          + +  e f+ + fk+ +  dp     ++f rv sG  + +  + +   gk+ ++ + l++ a+dr++v+ea aGdi+ l      + G+t+ +    ++   +    p +   +  k     +++   lv+l  e    +  r  +  + ++  +G l ++++v r++ e+nve+ + + 
  MMETSP1174-20130828|2795_1  58 LEKYRNIGIMAHIDAGKTTTTERILFYTGKTYKIGEVHDG----GATMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGADFYNAVSMIKSMLDSVPAVIQLPIGNEADFKGVIDLVNMNAieWLAE-DLGASFIETplaewDGPEDLKAkaQEYHEALVELVVEQDEDAlMEYLEGNEPDVAtlKKCIRTGTIanafVPVTTGTAFKNKGVQPLLDAVNDYMPSPLDVEAIKGTmmgsdepierISSDSEPFAALAFKVMT--DP-FVGTLTFARVYSGVLQSGSSVYNSVKGKNERVGRMLQMNANDRTEVKEARAGDIVALVGLKDTTTGETLCDkAGAVILEKMDFPEPVIKVAVEPKTKADMQKMGEALVRLAGEDPSfRFSRDEETGQTVIEGMGELHLEIIVDRMRREFNVECNVGAP 534
                 5799********************************9865....5899*******************************************************************************************************************************998665113444.333333332000012222222200222233333333333333145565544433222345555655222269999***********************999998888222222211133445678899999853..66.6789*******************************************************999******97514566666666556777778888888888999999****977665055555555699************************987655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   2.4e-34   7.1e-32       2     163 ..      60     231 ..      59     232 .. 0.96

  Alignments for each domain:
  == domain 1    score: 108.3 bits;  conditional E-value: 2.4e-34
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklve 163
                 k+++i+i++h+d+GK+t+++++l++++   ++++   g   ++++eq++e+G+t             ++n++DT+G++df       + eversl+v+d++++v d   g+e+q ++++++a k+gvp++ ++nK+D  + d+   v  +++ l   p +i+l++ +++ + ++++lv+
  MMETSP1174-20130828|2795_1  60 KYRNIGIMAHIDAGKTTTTERILFYTGKTYKIGEvhdGGATMDWMEQEQERGITitsaattcfwkdHQINIIDTPGHVDF-------TLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGaDFYNAVSMIKSMLDSVPaVIQLPIGNEADFKGVIDLVN 231
                 789**********************9988888888888888999999*********************************.......********************************************************************9999*************9999986 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   9.6e-17   2.8e-14      12     141 ..      61     191 ..      54     211 .. 0.89
   2 ?   -0.7   0.1      0.33        96     189     204 ..     324     339 ..     268     439 .. 0.62
   3 ?   -2.1   0.0      0.88   2.6e+02     230     253 ..     418     441 ..     408     451 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 9.6e-17
   TIGR00485  12 hvnvgtighvdhgkttltaaittvlakegk.aaakk.ydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlv 141
                 + n+g + h+d gktt t  i     k++k +++++    +d   +e++rgiti++a      ++     +d pgh d+  ++      +dga+ v  +  g+ pq+      a++ gvp++ +f+nk+d  
  MMETSP1174-20130828|2795_1  61 YRNIGIMAHIDAGKTTTTERILFYTGKTYKiGEVHDgGATMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRM-CFINKMDRT 191
                 579******************99999988855555524689****************9999999999999***************************************99*********97.8*****975 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.33
   TIGR00485 189 ilelmeavdeyiptpe 204
                 ++ l++av++y+p+p 
  MMETSP1174-20130828|2795_1 324 VQPLLDAVNDYMPSPL 339
                 5555666666666553 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.88
   TIGR00485 230 grvergevkvgeeveivglketkk 253
                  r e  e + g+ v +vglk+t+ 
  MMETSP1174-20130828|2795_1 418 DRTEVKEARAGDIVALVGLKDTTT 441
                 5778888999999******98864 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   1.2e-14   3.6e-12       8     157 ..      62     194 ..      57     223 .. 0.85
   2 ?    3.3   0.0     0.017         5     241     290 ..     378     431 ..     363     452 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.2e-14
   TIGR00483   8 lnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnyd 157
                  n+ ++ h+d+gk+t++ r+l+ +g+  +  +     e ++ g         +d +++e+erg+ti  a +    + +++ i+d+pgh df  ++       d av v ++  g   v+pq+      a   g+ ++   inkmd+   d
  MMETSP1174-20130828|2795_1  62 RNIGIMAHIDAGKTTTTERILFYTGKTYK--IG----EVHDGG-------ATMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAG---VEPQSETVWRQANKYGVPRMC-FINKMDRTGAD 194
                 59999********************8643..44....455543.......258999***********9999999999*********************************9999...9***9999999******9986.69****97654 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.017
   TIGR00483 241 vgtvpvgrvetgvlkkgekvvfepagvsgev.ksiemhhe...qieqaepgdni 290
                 vgt+   rv +gvl++g+ v     g    v + ++m  +   ++++a  gd +
  MMETSP1174-20130828|2795_1 378 VGTLTFARVYSGVLQSGSSVYNSVKGKNERVgRMLQMNANdrtEVKEARAGDIV 431
                 9*******************9999898887734456654311156777777765 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.4   1.8e-13   5.2e-11      90     203 ..      64     194 ..      47     211 .. 0.77
   2 ?   -1.0   0.0      0.39   1.1e+02     276     331 ..     379     439 ..     362     447 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.8e-13
   TIGR00487  90 vtimGhvDhGktsLLdsi.....rktkvaegeaGGit.......qh......iGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpean 203
                 + im h+D Gkt+  + i     +  k+ e   GG t       q+        a +   +d+ +i  +DtPGh  ft    r  +v D +v v     Gv+pq +     a + +vP + +ink+D+  a+
  MMETSP1174-20130828|2795_1  64 IGIMAHIDAGKTTTTERIlfytgKTYKIGEVHDGGATmdwmeqeQErgititSAATTCFWKDH-QINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGAD 194
                 789999999999977766444445667777777776633333222211110034444444444.8**************************************************************99887 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.39
   TIGR00487 276 GpvatvlvqeGtLkvGDivvv.....gaayGkvramidekGksvkeagPsiaveilGlsev 331
                 G+++   v +G L+ G +v       +   G++  m  +  ++vkea     v ++Gl++ 
  MMETSP1174-20130828|2795_1 379 GTLTFARVYSGVLQSGSSVYNsvkgkNERVGRMLQMNANDRTEVKEARAGDIVALVGLKDT 439
                 555566677888888888864111113468999999999999**************99875 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     2e-10   5.9e-08       2     132 ..      63     206 ..      62     215 .. 0.84
   2 ?    3.2   0.1     0.021       6.3     190     245 ..     378     438 ..     364     484 .. 0.70

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2e-10
   TIGR00475   2 iiataGHvDHGKttLlkal...tgid............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeil 132
                 +i+++ H+D GKtt    +   tg               d + +E+ RG+ti    +    +d+++++iD PGH  f  ++  ++  +d+a+ v d   Gv +q +   + +++ g++  +  ++K+Dr+  +   ++ +++k++l
  MMETSP1174-20130828|2795_1  63 NIGIMAHIDAGKTTTTERIlfyTGKTykigevhdggatMDWMEQEQERGITITSAATTCFWKDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVP-RMCFINKMDRTGAD-FYNAVSMIKSML 206
                 5788999999999987765444554456667778887455677889*******999999999********************************************************.7899******9877.444445555555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.021
   TIGR00475 190 aGtvvtGtafsGevkvgDelvlepinkkvrvkal.q...aqnqsvekavAGqRialn.lad 245
                 +Gt     ++sG  + g +++ +  +k+ rv  + q   + +++v++a AG+ +al  l+d
  MMETSP1174-20130828|2795_1 378 VGTLTFARVYSGVLQSGSSVYNSVKGKNERVGRMlQmnaNDRTEVKEARAGDIVALVgLKD 438
                 688888889************999999999965523222346789**********842554 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   3.7e-05      50     148 ..      96     193 ..      73     208 .. 0.85
   2 !    7.2   0.0    0.0017       0.5     239     283 ..     386     434 ..     376     465 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.3e-07
   TIGR02034  50 dlallvdGlqaereqgitidvayr.yfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdy 148
                 d    +d ++ e+e+giti  a    f  d  +  + dtPGh+ +t ++  +    d av + d   Gv  q       a   G+ ++   +nk+d ++ 
  MMETSP1174-20130828|2795_1  96 DGGATMDWMEQEQERGITITSAATtCFWKD-HQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMC-FINKMDRTGA 193
                 56667999***********98765155555.556667*************************************99999999**99986.599*998765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0017
   TIGR02034 239 iasGsvkvGdevvvlpsgresrvarivtfd....gelekaeaGeavtlv 283
                 + sG ++ G +v+   +g++ rv r+++++     e+++a+aG+ v+lv
  MMETSP1174-20130828|2795_1 386 VYSGVLQSGSSVYNSVKGKNERVGRMLQMNandrTEVKEARAGDIVALV 434
                 6799999999***999*********99987322347999******9987 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06   0.00068       9     134 ..      66     191 ..      62     207 .. 0.69
   2 ?    1.5   0.1     0.057        17     486     534 ..     385     438 ..     372     479 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.3e-06
   TIGR00491   9 vlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikr....lcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidri 134
                 ++ h+d Gktt  ++i      +   G++  + Ga+   ++  ++    ++      +  d     + +idtPGh  ft    r   + d a+ v d + G++pq++       ++ +P +   nk+dr 
  MMETSP1174-20130828|2795_1  66 IMAHIDAGKTTTTERILFYTGKTYKIGEVH-DGGATMDWMEQEQErgitITSAATTCFWKD---HQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRT 191
                 567777777777777754444444444442.224433333222220100222222222222...23458**************************************999999***************95 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.057
   TIGR00491 486 evlaGvlrvgapl...ikedGekvGevreikdrg.envkeakagkavsia.idd 534
                 +v +Gvl+ g ++   +k   e+vG + +++ ++  +vkea+ag+ v++  ++d
  MMETSP1174-20130828|2795_1 385 RVYSGVLQSGSSVynsVKGKNERVGRMLQMNANDrTEVKEARAGDIVALVgLKD 438
                 7889999988655222677889********9765168********999742455 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.5e-05    0.0074      31     125 ..     109     195 ..     106     219 .. 0.72
   2 ?   -3.7   0.0       3.3   9.7e+02     307     344 ..     296     333 ..     290     336 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.5e-05
   TIGR03594  31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeea 125
                 + g+T     +++ +k++++++iDT+G          + + ++e +++  d  + v+d+ +g++++ e++ +  +k++ p +  +NK+d++ ++ 
  MMETSP1174-20130828|2795_1 109 ERGITITSAATTCFWKDHQINIIDTPGHV--------DFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQANKYGVPRMCFINKMDRTGADF 195
                 56777777777888888888888888873........2334455666666777788888888888888888888888888888888888875554 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.3
   TIGR03594 307 elkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 +lkk +++     +f+p+ +  A ++kgv+ ll+a+++
  MMETSP1174-20130828|2795_1 296 TLKKCIRTGTIANAFVPVTTGTAFKNKGVQPLLDAVND 333
                 56666777777778899999999999999999998876 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012     0.034       7     125 ..      63     169 ..      58     207 .. 0.74
   2 ?   -4.1   0.0       4.9   1.4e+03     276     322 ..     418     465 ..     397     471 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
   TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtke 125
                 nig++ h+D Gktt+++ +     +t++        ++ G a +  ++ e+   ++ +t ++ +++c        ++ ++D+PGh  +   +     ++dga+ v +    v +pq + 
  MMETSP1174-20130828|2795_1  63 NIGIMAHIDAGKTTTTERILFYTGKTYKI-----GEVHDGGATMDWMEQEQ---ERGITITSAATTCFW---KDHQINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGV-EPQSET 169
                 9***************9987655555542.....23444555555555544...456666666777763...456899*******9999999999999*****999988877.666654 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 4.9
   TIGR03680 276 gkkkveeakPgGlvavgtkLDPaltka.DalaGqvvgkpgklppvrek 322
                  +++v+ea+ g +va+    D +   +    aG+v+ ++ ++p+   k
  MMETSP1174-20130828|2795_1 418 DRTEVKEARAGDIVALVGLKDTTTGETlCDKAGAVILEKMDFPEPVIK 465
                 456788888888888776666543222112356666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.85u 0.19s 00:00:01.04 Elapsed: 00:00:00.65
# Mc/sec: 1535.13
//
Query:       MMETSP1174-20130828|2796_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-64  214.1  23.9    5.8e-64  214.1  16.6    1.6  2  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1  16.6   1.4e-67   5.8e-64       1     275 []     138     411 ..     138     411 .. 0.97
   2 ?   -2.9   0.4       0.2   8.3e+02      76     113 ..     423     460 ..     413     500 .. 0.67

  Alignments for each domain:
  == domain 1    score: 214.1 bits;  conditional E-value: 1.4e-67
   TIGR00932   1 llaavlivllarrlripsvvgeliaGvilGpsglglisnselvnllaelGvilLlFliGLeldlerlkkllkkalgvgvlqvlvsf.vllalllshllglklelavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasvsaekekvalvllllkvllaflllvllvkyllrpvlrltaeadrselatalsLllvlgsalladllGlsmalGAFlAGvvlseseyrhkleeklepikygvliplFFisvGlsld 275
                 llaa+l  ++++ + +++++g +i G++lGps l +i++ + ++ laelG++++lF +GLel+l+rlk+++k ++g+g+lq+++s  vl+ l+  +l g++  +a+v+g +l+lss a+v+q+L++ + l tr+G++++g+l++qDla+v++L+ l+lla+ s ++  val+ +++k+++a+ ++ +++ +ll+p++ ++++++++  + al+ + vl ++ +++ lGls  lGAFlAGv+lse+ y+ ++e++++p++ g+l++lFF +vG s+d
  MMETSP1174-20130828|2796_1 138 LLAAALTAPVMKAFDLSPIIGFMITGCLLGPSALDVIHDMHNIEMLAELGIVFFLFEMGLELSLDRLKAMKKDVFGLGLLQMVISSvVLTNLAKLVLPGVSSATALVVGGGLALSSSAFVLQLLRDNDDLGTRQGRAAFGILLFQDLAIVPMLVGLPLLAG-SGTSVSVALFTAVVKTIIAMSAISFTGAFLLNPLFYAVSKSKSHTSFFALVIVTVLSMSFVTEGLGLSNTLGAFLAGVLLSETRYKYQVEADIAPFR-GLLLGLFFTTVGFSID 411
                 689*********************************************************************************993455566677789*************************************************************8.899999*******************************************************************************************.*************998 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.2
   TIGR00932  76 gvgvlqvlvsfvllalllshllglklelavvigiilsl 113
                 + ++  +l + + ++++l+ l++++l  ++ +g+ ls 
  MMETSP1174-20130828|2796_1 423 VGAIGGLLAAKACVIIALCRLFKIRLSQSIQAGLFLSQ 460
                 44555556666777788888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.90
# Mc/sec: 1236.30
//
Query:       MMETSP1174-20130828|2797_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 699.54
//
Query:       MMETSP1174-20130828|2798_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082    9.7   2.4      0.059   10.1   0.2    1.6  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   1.4e-05     0.059     202     287 ..       5      93 ..       2      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.4e-05
   TIGR01843 202 reraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaele...eelskardrlqrliirsPvdGtvqslkvh 287
                 +  +++ ++  + e++++ l++ ++ +e + ++  ++ +++++++lr+a+ + a+l+   ee +  +d ++ l+ rs v+G v s++ +
  MMETSP1174-20130828|2798_1   5 DGSKATARDFLQIESSVTLLRRRMSLTEDNGKKDSDSEVNQLKQQLRNAEIKNAGLTdriEEITGTSDYQSFLDTRSSVSGHVPSMHSN 93 
                 556778899999**************************************999999822244556788999999*********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 530.76
//
Query:       MMETSP1174-20130828|2800_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-146  485.3  10.6    1.1e-83  279.6   4.5    3.0  3  TIGR02361 dak_ATP: dihydroxyacetone kinase
      2e-96  320.8   1.0    1.9e-79  264.9   1.7    2.3  2  TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit
    1.6e-66  222.5   0.0    5.5e-56  187.8   0.1    2.1  2  TIGR02362 dhaK1b: probable dihydroxyacetone kinase DhaK1b subunit
    4.8e-19   66.7   0.9    2.8e-11   41.4   0.1    2.5  2  TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit


Domain annotation for each model (and alignments):
>> TIGR02361  dak_ATP: dihydroxyacetone kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.6   4.5   1.1e-86   1.1e-83       1     248 [.       6     251 ..       6     264 .. 0.95
   2 !  132.8   0.0   3.2e-42   3.3e-39     262     477 ..     365     574 ..     360     589 .. 0.87
   3 !   73.0   0.4   4.2e-24   4.3e-21     491     582 ..     614     706 ..     597     707 .. 0.92

  Alignments for each domain:
  == domain 1    score: 279.6 bits;  conditional E-value: 1.1e-86
   TIGR02361   1 kkfvndaeelvedalkglvaanpe.lqllesekvvlrkdlk.ekkkkvslisGGGsGHEPahagfvGkglLtaavaGevFaSPstkqilaaikavvesgekGtLlivkNYTGDvLnFGLaaEkakaeGvkvelvvvgDDvsvgkkkggkvgrRglagtvlvhKiaGaaAaegssLeevakvakavaenlvtigasLdhchvPgkaeaeeelkedevElGlGiHnEpGvkrispipiedlvvkllkkllde 248
                 kk++nd+ ++ve+++ g++a+ ++ l  le   v+l+++ +  k ++v+lisGGGsGHEPahag++G g+L++av G vFaSPst ++laai+a+   g +G+LlivkNYTGD++nFG a   a++eG+ ve+vvv DD+++++ k g+ g Rg+agtvlvhK aGaaAa+g +L eva+va+++a+++ t+++s+ +c+vPg + ++  l+++ +E+GlGiH+EpG+ +    p+++lv ++l+ + ++
  MMETSP1174-20130828|2800_1   6 KKLINDPRNVVEEMVCGMCAVHSDkLVRLEGFTVLLHRNINtIKANQVTLISGGGSGHEPAHAGYIGDGMLSGAVLGGVFASPSTTSVLAAIRAAC--GSHGVLLIVKNYTGDRINFGQALLVARTEGIIVEMVVVDDDCALPEGK-GVTGGRGVAGTVLVHKAAGAAAAQGLPLTEVAAVARSAAAAVKTLATSMTTCTVPGTTPTD-YLDNKTIEMGLGIHGEPGMIQKPWKPAAELVEDMLNVIASR 251
                 799***************99877659999999999999998667899**********************************************999..78**********************************************.5********************************************************9998.9**********************************998876 PP

  == domain 2    score: 132.8 bits;  conditional E-value: 3.2e-42
   TIGR02361 262 devvllvnnlGgvsnlelgiiaeevveqlaeekykikpvrilsgtfmtsLdgkgfsitllnvteagg.sildlldapteaagwpvaaaskleaeekeeeksseesekieekeaksskvkvdkekvekvleagvkalleaepkltklDtvvGDGDcGstlargaeailealkskklelddaaellaeisdvveekmgGtsGaLysiflsalaqslkek 477
                   +vl+vn lGg++++e +i+a  +++  ++     +pvr+++g+fmt+L+++g+s+++l v+  +g  +l+ +d pt+a +w++ ++++  +++++ ++ +    + + k ++++ v ++++ v+ ++ea+++al +aep+lt++D+++GDGDcG+t++rga a++       l+  +aa++   i+d v  +mgG+ GaL+ i+++a + +l e 
  MMETSP1174-20130828|2800_1 365 RPIVLMVNSLGGTPTMERYIVAYDALRVCRRM--GFEPVRVMVGAFMTALEMQGISLSVLPVEGEEGaLLLERIDRPTTAFAWTIPSTEASISNHIRATHKPMIM-TLSPKCVDPNWV-ISPNAVA-AIEAACDALEAAEPDLTAWDQIAGDGDCGITVQRGAVAVRAVAP--MLAGMNAAKAYGAIADAVAGSMGGSLGALLEILFRAGRIHLLED 574
                 459***********************999888..69***************************96665899**************98888777766666555554.555566666656.6787776.69*************************************98877..999999*****************************987776654 PP

  == domain 3    score: 73.0 bits;  conditional E-value: 4.2e-24
   TIGR02361 491 aalkaalealskYtkAraGdrTliDaLapfvealeaskde..lekavkaaekgaeaTkklkaklGRasYvsseelkekvpDpGAvglaallkgl 582
                  al a+ +a+   ++A++G rT++DaL+p+ve+l++s++    +kav aae+gae+T  ++  +GR+ Y+  e lk +vpDpGA ++a  ++++
  MMETSP1174-20130828|2800_1 614 GALYAGTNAIMSIGGAEPGMRTMLDALVPAVEKLRKSQSRddWKKAVRAAEEGAEGTLLMEGLAGRSNYINAELLK-TVPDPGAKAVAIAFRAA 706
                 5899999****************************9876555*******************************886.7***********99986 PP

>> TIGR02363  dhaK1: dihydroxyacetone kinase, DhaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   1.7   1.8e-82   1.9e-79       2     248 ..       6     253 ..       5     268 .. 0.95
   2 !   52.0   0.0   1.1e-17   1.1e-14     250     321 ..     361     433 ..     324     445 .. 0.84

  Alignments for each domain:
  == domain 1    score: 264.9 bits;  conditional E-value: 1.8e-82
   TIGR02363   2 kklindkedvveemleGlvkahpelvekvedekvivrkekkv..kgkvalvsGGGsGhePahaGfvgeGmLdaavaGevftsPtpdkileaikavdqgeGvllivknytGdvlnfemaaelaeaegikvekvvvdddvavedslytagrrGvagtvlvekivGaaaekGasLeevkelaekvveetksigvalkaatvpaaGkpsfeladdelelGvGihgepGirreklksadeiaeelldklleele 248
                 kklind+++vveem+ G+ + h++++ ++e+ +v+ +++ ++  +++v+l+sGGGsGhePahaG++g+GmL++av G vf+sP++  +l+ai+a+   +GvllivknytGd +nf  a  +a +egi ve+vvvddd a  + +  +g rGvagtvlv+k +Gaaa +G  L+ev+++a+    ++k+++ +++++tvp + +p+  l+++ +e+G+GihgepG+ +++ k a e++e++l+ +++ l+
  MMETSP1174-20130828|2800_1   6 KKLINDPRNVVEEMVCGMCAVHSDKLVRLEGFTVLLHRNINTikANQVTLISGGGSGHEPAHAGYIGDGMLSGAVLGGVFASPSTTSVLAAIRAACGSHGVLLIVKNYTGDRINFGQALLVARTEGIIVEMVVVDDDCALPEGKGVTGGRGVAGTVLVHKAAGAAAAQGLPLTEVAAVARSAAAAVKTLATSMTTCTVPGT-TPTDYLDNKTIEMGLGIHGEPGMIQKPWKPAAELVEDMLNVIASRLQ 253
                 8******************************9998887766544679********************************************************************************************************************************************************87.67888**********************************99988754 PP

  == domain 2    score: 52.0 bits;  conditional E-value: 1.1e-17
   TIGR02363 250 qkgde.vivlvnglGatpllelyvllkevqekleekglevartlvGnyvtsldmaGvsltllkvdeellelld 321
                 +kgd+ ++++vn+lG+tp++e y++  +  + +++ g e  r +vG+++t+l+m+G+sl++l v+ e  +ll 
  MMETSP1174-20130828|2800_1 361 NKGDRpIVLMVNSLGGTPTMERYIVAYDALRVCRRMGFEPVRVMVGAFMTALEMQGISLSVLPVEGEEGALLL 433
                 5565526779******************************************************877665553 PP

>> TIGR02362  dhaK1b: probable dihydroxyacetone kinase DhaK1b subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.1   5.4e-59   5.5e-56       1     242 [.       7     251 ..       7     256 .. 0.93
   2 !   32.5   0.0     1e-11     1e-08     245     326 .]     360     445 ..     358     445 .. 0.84

  Alignments for each domain:
  == domain 1    score: 187.8 bits;  conditional E-value: 5.4e-59
   TIGR02362   1 kilnekqelvsqaikgiaaarpk.lvqlkdlpviydkt...lddqliPilsGGGsGhePahlGyvGeGmlsaaisGdvfvPPtaqdileairfldrgkgvfliiknfeadleefsqaeeqarkegrdikyiivaddisvesekfkkrrrGvaGtvllhkilGaaakeGasldeleelalalvtnlatlGvaaksaslpeqseplfdleegeisyGiGihGeeGyrkepfvsserlavelvnklklk 242
                 k++n+++++v++++ g+ a +++ lv+l+  +v+ +++   ++ +++ ++sGGGsGhePah Gy+G+Gmls a+ G vf  P+++ +l+air     +gv+li+kn++ d  +f qa   ar eg+ +++++v+dd ++ + k  +  rGvaGtvl+hk  Gaaa++G  l e+  +a + +  ++tl  ++++ ++p+  +p+  l+++ i  G+GihGe+G  ++p+  + +l ++++n + ++
  MMETSP1174-20130828|2800_1   7 KLINDPRNVVEEMVCGMCAVHSDkLVRLEGFTVLLHRNintIKANQVTLISGGGSGHEPAHAGYIGDGMLSGAVLGGVFASPSTTSVLAAIRAACGSHGVLLIVKNYTGDRINFGQALLVARTEGIIVEMVVVDDDCALPEGKGVTGGRGVAGTVLVHKAAGAAAAQGLPLTEVAAVARSAAAAVKTLATSMTTCTVPGT-TPTDYLDNKTIEMGLGIHGEPGMIQKPWKPAAELVEDMLNVIASR 251
                 5799*************9998752688998888877661115689**************************************************************************************************9999***************************************************97.566779************************999999999977665 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1e-11
   TIGR02362 245 wqedda.yillvnnlGgttkleqlvfandvrellaledlkldfikvGklltsldmkGlsltllrlkdeq...wldylkapvdaaaw 326
                 ++++d+  +l+vn+lGgt+++e+++ a d  ++    +++   + vG ++t+l+m+G+sl++l +  e+    l+ +++p+ a aw
  MMETSP1174-20130828|2800_1 360 YNKGDRpIVLMVNSLGGTPTMERYIVAYDALRVCRRMGFEPVRVMVGAFMTALEMQGISLSVLPVEGEEgalLLERIDRPTTAFAW 445
                 556665146789********************9999999999999*******************9987733346777788888888 PP

>> TIGR02365  dha_L_ycgS: dihydroxyacetone kinase, L subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.5e-09   8.7e-06       4      83 ..     487     566 ..     484     583 .. 0.90
   2 !   41.4   0.1   2.7e-14   2.8e-11     102     194 ..     614     706 ..     597     708 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.5e-09
   TIGR02365   4 llkklaelveenkeyLteLDraiGDgDHGiNlarGfsevkekleklkeksiqeilkkvamaLiskvGGAsGplyGtaflk 83 
                  ++++++ +e+ +  Lt  D+  GDgD Gi ++rG  +v +    l+  + ++ +  +a a+  ++GG  G+l+  +f +
  MMETSP1174-20130828|2800_1 487 AIEAACDALEAAEPDLTAWDQIAGDGDCGITVQRGAVAVRAVAPMLAGMNAAKAYGAIADAVAGSMGGSLGALLEILFRA 566
                 689999*******************************************************************9887754 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 2.7e-14
   TIGR02365 102 elleaglegvkarGkaelgeKtmvDvlapavealkkaveekealaeveekakeaaeatkdlvAtkGRAsylgersiG.hiDPGatSsvllleal 194
                  +l ag +++ + G ae+g +tm+D+l+pave+l+k+  +++  + +  +a+e+ae t  +    GR  y+  + +    DPGa+++++ ++a 
  MMETSP1174-20130828|2800_1 614 GALYAGTNAIMSIGGAEPGMRTMLDALVPAVEKLRKSQSRDDWKK-AVRAAEEGAEGTLLMEGLAGRSNYINAELLKtVPDPGAKAVAIAFRAA 706
                 568899*****************************9777666655.7889*********************988765156******99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 2088.36
//
Query:       MMETSP1174-20130828|2801_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1174-20130828|2803_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.54
# Mc/sec: 1833.18
//
Query:       MMETSP1174-20130828|2808_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   18.7   0.1    0.00061   17.8   0.0    1.5  1  TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein


Domain annotation for each model (and alignments):
>> TIGR02968  succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-07   0.00061      58      77 ..      40      66 ..      19      90 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-07
   TIGR02968 58 lalllHawiGlrdvleDYv.......k 77
                lal lH  iG+  vl+DY+        
  MMETSP1174-20130828|2808_1 40 LALPLHGHIGMNYVLTDYIpkvfgkaG 66
                57789**************54444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 537.73
//
Query:       MMETSP1174-20130828|2806_1  [L=1144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 2603.37
//
Query:       MMETSP1174-20130828|2809_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00054   15.6   4.8    0.00054   15.6   3.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        0.4    7.7  22.1      0.014   12.5  11.3    1.4  2  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.3   2.6e-07   0.00054     367     797 ..      62     153 ..      40     262 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.6e-07
   TIGR02168 367 leelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeiee.leaeieqlk 797
                 +ee+++  +++ +e+e++++e+a+++ ++++ ++ l                                                                                                                                                                                                                                                                                                                                                    ++++l+e++a+   +++++e er e++++ e ++++ ++ +ee+e+  +a+++++ 
  MMETSP1174-20130828|2809_1  62 REEMSTVRKQYAAEYEAKQDELARIKAEAEKVRKAL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAQRLKEKVARSAVNRARVETERLEAHARFEANRANSDALREEREDqMQARLAAMI 153
                 222222222222222222222222222222222221....................................................................................................................................................................................................................................................................................................................................................12222222222222222222222222222222222222222222110112222222 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  11.3   6.8e-06     0.014     181     296 ..      67     181 ..      51     188 .. 0.55
   2 ?   -3.6   0.2      0.53   1.1e+03      61      75 ..     267     279 ..     251     287 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.8e-06
   TIGR02794 181 eakkkaeaeak.KakaeaeaKakae..eakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerkaakqeaeladlaGlaeeknaekqgs.gaagkavasevdkya..gaikqaiqqkllddp 296
                   +k+ +ae + K+ + a+ Ka+ae    + Ka +  k+K +  A  +a+ e ++    ea ++    ea+ a+  +l+ee + ++q+  +a  +++++e++++   + ++ ai q +ld +
  MMETSP1174-20130828|2809_1  67 TVRKQYAAEYEaKQDELARIKAEAEkvRKALKA-QRLKEKVARSAVNRARVETERL---EAHARF---EANRANSDALREEREDQMQARlAAMIAHLEAESSQWLtpDTVTTAIDQAFLDTT 181
                 356666666666777777777766632212333.3488888888888888887755...333332...112222224555555555522134445555577777422577777777777665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.53
   TIGR02794  61 aakkepkpeepkqer 75 
                 + k  pkp++p+q++
  MMETSP1174-20130828|2809_1 267 QTK--PKPPRPPQDP 279
                 222..2344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       361  (0.0880059); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|2810_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|2807_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1228.86
//
Query:       MMETSP1174-20130828|2813_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-41  137.9   0.0    1.2e-40  137.4   0.0    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    3.8e-40  136.0   0.0    4.9e-40  135.7   0.0    1.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    2.4e-38  130.2   0.0    2.9e-38  130.0   0.0    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    5.4e-38  129.1   0.2    7.5e-38  128.6   0.1    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   1.2e-43   1.2e-40     358     585 ..       5     240 ..       3     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 1.2e-43
   TIGR01348 358 eevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevai..lGvsk.....salePvWdgk...efePrlllPlslsydhrvidGadaarflkylselladirrl 585
                 +++++s+i+++  + ++ + + iPh    d+ +   l  +r q+n ea++   ++kl  ++i+lka++ al ++P +n+s+++d  ++i+    n+Gva+dt +GllvPv+++v+  +i+++ + +++l +    + l  +++ Ga+ftis++G+iGg+ ++Pi+  P+vai  lG  +     s+ +P   g    e +   ++ ++++ dhr++dGa  arf +     ++d+ ++
  MMETSP1174-20130828|2813_1   5 RTEKISGIRRAMFRTMTES-LRIPHFGYGDEVNASGLVITRTQLN-EARALTGEGKLSFMPIILKAASLALIDFPIMNSSISADETEIIFHSSHNLGVAMDTEKGLLVPVVQNVQDMSILDIHQRMTELKELGMSGELGEKHLTGATFTISNIGNIGGNYMSPIIMPPQVAIcaLGKMRqelrrSSNDPSDGGAgddEGTWTPVMQMAFAGDHRILDGATVARFAEAFKAYMEDPITM 240
                 57899**********9987.79***********************.9*****************************************************************************************************************************555544311111555666555454544455567788999**********************99876 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   4.8e-43   4.9e-40     343     570 ..       5     236 ..       2     238 .. 0.91

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 4.8e-43
   TIGR02927 343 ttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikde.....dGnesiairsvvylpltydhrlvdGadagrflttikkrlee 570
                 +t+k++ ir+ + + + esl+i   +    ev+ + ++  r++  ++ a     +l+f+p + ka+  al   p +n+s+ ++  e+ +h + +lg+a+dt++Gll+pv++n +d+s+ ++ +++++l +   +++l  ++l+G+tfti+niG  G  + +pi++ppq+ai  +G + ++ r   ++      G +  +   v+ ++++ dhr++dGa  +rf  + k  +e+
  MMETSP1174-20130828|2813_1   5 RTEKISGIRRAMFRTMTESLRIP-HFGYGDEVNASGLVITRTQLNEARALTGEGKLSFMPIILKAASLALIDFPIMNSSISADETEIIFHSSHNLGVAMDTEKGLLVPVVQNVQDMSILDIHQRMTELKELGMSGELGEKHLTGATFTISNIGNIGGNYMSPIIMPPQVAICALGKMRQELRRSSNDpsdggAGDDEGTWTPVMQMAFAGDHRILDGATVARFAEAFKAYMED 236
                 8********************96.68899*********99999877777777779*************************************************************************************************************************98876655432121124667788899**********************999988875 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   2.8e-41   2.9e-38     213     436 ..       8     241 ..       4     242 .. 0.88

  Alignments for each domain:
  == domain 1    score: 130.0 bits;  conditional E-value: 2.8e-41
   TIGR01349 213 plsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaa..eervklsvnDlivkAvalAlrevPevnsswtd..dvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavv.knke......ekglevasilsvtlsvDHRviDGavgAeflkelkkllenPiell 436
                  +s iR+ + + ++es   iPh+    evn++ l+  r++ln a    ++ kls   +i+kA  lAl ++P +nss +   + i+ ++  +++vA+ +++Gl+ P+v+n++  ++ +i + + el +   +++L ++   g tftisn+G +g +  + ii pPq ai a+g  +++    +n++      ++  +   ++++  + DHR++DGa+ A+f +++k ++e+Pi++l
  MMETSP1174-20130828|2813_1   8 KISGIRRAMFRTMTESL-RIPHFGYGDEVNASGLVITRTQLNEARalTGEGKLSFMPIILKAASLALIDFPIMNSSISAdeTEIIFHSSHNLGVAMDTEKGLLVPVVQNVQDMSILDIHQRMTELKELGMSGELGEKHLTGATFTISNIGNIGGNYMSPIIMPPQVAICALGKMRQELRRsSNDPsdggagDDEGTWTPVMQMAFAGDHRILDGATVARFAEAFKAYMEDPITML 241
                 57999*99999888886.69**********************86511579*************************9986568899999************************************************************************************9887633213333111111233456789**********************************8 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.1   7.3e-41   7.5e-38     205     401 ..      33     241 ..       7     244 .. 0.91

  Alignments for each domain:
  == domain 1    score: 128.6 bits;  conditional E-value: 7.3e-41
   TIGR01347 205 nevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaei..dgddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaike...R....Pv...avngkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperll 401
                 +ev+ s ++  R + +e+   + + kl Fm +  ka+  al +fP +n++i  d+++i++++  +++va+ t+kGL+vPvv +++ +s++di ++++el + +  g+l+ + ltg tFti+n G  G  +  Pii ppq+ai  + ++++   R    P    a +++    P+m +a + DhR++DG     F    k+ +edp ++l
  MMETSP1174-20130828|2813_1  33 DEVNASGLVITRTQLNEARALTGEGKLSFMPIILKAASLALIDFPIMNSSIsaDETEIIFHSSHNLGVAMDTEKGLLVPVVQNVQDMSILDIHQRMTELKELGMSGELGEKHLTGATFTISNIGNIGGNYMSPIIMPPQVAICALGKMRQelrRssndPSdggAGDDEGTWTPVMQMAFAGDHRILDGATVARFAEAFKAYMEDPITML 241
                 69999*********************************************9556799**********************************************************************9999***********87777654222333334333366788999**********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 808.43
//
Query:       MMETSP1174-20130828|2817_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 227.57
//
Query:       MMETSP1174-20130828|2818_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.23s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 354.72
//
Query:       MMETSP1174-20130828|2823_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 203.98
//
Query:       MMETSP1174-20130828|2825_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1180.77
//
Query:       MMETSP1174-20130828|2826_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   17.8   0.0    0.00094   15.3   0.0    1.8  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
     0.0018   15.6   0.0     0.0032   14.8   0.0    1.4  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
  ------ inclusion threshold ------
       0.02   12.1   0.0      0.028   11.7   0.0    1.3  1  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.8e-07   0.00094     176     268 ..      46     125 ..      23     133 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.8e-07
   TIGR04075 176 rdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vkagaalc.vpGnheekllrk 268
                  +   P  i+Gd+hG + +l el++  G                  + + +flGd+vdrG  s++   l   + v+  a +c ++Gnhe++ + +
  MMETSP1174-20130828|2826_1  46 AHVPAPVTIVGDIHGQFYDLLELFRIAGD-----C----------PNSNFLFLGDYVDRGYYSVECATLCLLLkVRYPARVClLRGNHESRQITQ 125
                 45567899999999999999888765553.....1..........234689***********99877765543255555566269****986655 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-06    0.0032       5     128 ..      54     178 ..      51     190 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryvksl..gdavrlvl..gnhdlhllavalgikkvkpkdrldalleapdadellnwlrrqpllvvdeekklvlahagispdwd 128
                 ++gd+hg + +l  l++     p+ + l+l gd v rg  s+e+  +   l     +r+ l  gnh+   ++ + g      k   ++ +    + e+ ++l      v   ++k+   hag+sp  d
  MMETSP1174-20130828|2826_1  54 IVGDIHGQFYDLLELFRIAGDCPNSNFLFL-GDYVDRGYYSVECATLCLLLkvRYPARVCLlrGNHESRQITQVYGFYDECMKKYGSPAVW-LMFVEVFDYLPLAAS-VDGYNQKIFCPHAGLSPSLD 178
                 79*****99999888776666677777765.************966543331144445443339999999998888876666655555443.346666666654433.33456677777888888766 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05     0.028      52     111 ..      64     122 ..      44     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2e-05
   TIGR04123  52 tLerLealieelqpeelivlGDlfhdreaaerlelealaelrelaaglevvlveGNHDr.a 111
                 +L +L ++  ++  ++ ++lGD ++  + +   e ++l  l +    ++v l +GNH+  +
  MMETSP1174-20130828|2826_1  64 DLLELFRIAGDCPNSNFLFLGDYVDRGYYSV--ECATLCLLLKVRYPARVCLLRGNHESrQ 122
                 56667777888889999*******9988877..7899999999999************533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 813.22
//
Query:       MMETSP1174-20130828|2829_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|2830_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 244.66
//
Query:       MMETSP1174-20130828|2831_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-06   24.5   0.0    0.00055   17.8   0.0    2.2  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.3e-07   0.00055       2      35 .]       2      35 ..       1      35 [. 0.97
   2 !    4.8   0.0    0.0018       7.3       4      31 ..      39      66 ..      36      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-07
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                ++n+ is++ k  ++ + l l++ M+ +g+ Pd+
  MMETSP1174-20130828|2831_1  2 SFNAAISACEKGEQWIKTLGLLQTMRQSGVQPDV 35
                89******************************96 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0018
   TIGR00756  4 ntlisglckagrveeAlelfdeMkergi 31
                 + is +   +++ eA +lf + +e+g+
  MMETSP1174-20130828|2831_1 39 KAAISTCESFRQYGEADRLFLQAIESGL 66
                5567777777999*********999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1174-20130828|2832_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    9.0   8.3       0.59    8.2   5.7    1.5  1  TIGR01803 CM-like: chorismate mutase related enzymes
        3.2    4.7  21.6        3.3    4.7  15.0    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01803  CM-like: chorismate mutase related enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.7   0.00029      0.59      10      58 ..      14      62 ..       6      64 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00029
   TIGR01803 10 rlDaalldalaeRldyvkraaefKrslevkidaPeRvAevkenaaRyAa 58
                r++a+ + + + R++  + aae  +  e++  a +R+A+vk++ aR A+
  MMETSP1174-20130828|2832_1 14 RIEADRIAVEKARIEAERIAAEENARIEAEKTAAARLAQVKAEEARLAE 62
                566677777778888888899999999*******************997 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  15.0    0.0016       3.3     103     170 ..       5      64 ..       1      66 [] 0.47

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0016
   TIGR02794 103 qraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKa..ekkakee.AakkaEeeakakaa 170
                 +r        +a+e+a+   e+ + a e+ a+ +aE+ a++e+++    ek a+++ A+ kaEe++ a+a+
  MMETSP1174-20130828|2832_1   5 ERI-------AADEEAR--IEADRIAVEK-ARIEAERIAAEENAR-IeaEKTAAARlAQVKAEEARLAEAT 64 
                 233.......4444444..2334444333.344666644444433.2224444444777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|2833_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|2839_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 270.12
//
Query:       MMETSP1174-20130828|2835_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-14   49.3   0.0    4.7e-14   49.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00057   16.4   0.1    0.00083   15.8   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.3e-17   4.7e-14      37     187 ..     121     272 ..      89     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.3e-17
   TIGR03903  37 hPnivaLlDsGeaedgllFavFeyveGrtlrevLa....adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                    iv+ +      d+ +  v e+++   + ++++    +  ++p +  +++  q++ +l     + ++hRD+k  ni++  +++    k+ DFGi+  l ++++        ++ v+G+ +Y +Pe L g      +D+++ G+i++e +tG++
  MMETSP1174-20130828|2835_1 121 CQTIVKWFGTYMDHDDQVNVVLEFMDRGSVEDLVKhcrrNRVPIPEQVLAAMAFQIIWGLGYLNCESLMHRDIKGGNILLNSQGE---VKITDFGISRKLDDTDAKSDGDQRMASTVVGTKTYMSPERLEGKRYDDSADIWSLGIILVEAVTGNH 272
                 555666666666677777788888776666665532222556677777778888999999999*****************98875...79**************99999999999**************************************74 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-07   0.00083     256     310 ..     165     221 ..     130     226 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4e-07
   TIGR01982 256 dlkalaenlvesflkqvl..rdgfFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                   + la+   +++    +   +++ H D+  GNil++++g++ + DfGi  +l++ +
  MMETSP1174-20130828|2835_1 165 PEQVLAAMAFQIIWGLGYlnCESLMHRDIKGGNILLNSQGEVKITDFGISRKLDDTD 221
                 4455555555555544441146799************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.55
# Mc/sec: 976.72
//
Query:       MMETSP1174-20130828|2846_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   10.1   7.4       0.02   13.1   1.4    1.9  2  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.015        60      30      39 ..      14      23 ..       2      24 .. 0.75
   2 ?   13.1   1.4   4.8e-06      0.02       1      38 [.      22      56 ..      22      58 .] 0.87

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.015
   TIGR03655 30 eCktCgasgp 39
                +C tC a+ +
  MMETSP1174-20130828|2846_1 14 KCTTCVARLK 23
                7****99876 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.8e-06
   TIGR03655  1 lkpCPFCGgadvslregeddldeveivaveCktCgasg 38
                lk CP CG+ +  ++e+++   + e    +C tC a+ 
  MMETSP1174-20130828|2846_1 22 LKVCPGCGKGNG-VVEFTKSQRRKEGG--KCTTCVARL 56
                799*******99.78888888888888..9****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.22s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 201.46
//
Query:       MMETSP1174-20130828|2845_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-42  142.3   0.0    6.3e-42  141.9   0.0    1.0  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   1.5e-45   6.3e-42     178     441 ..      29     314 ..      20     336 .. 0.82

  Alignments for each domain:
  == domain 1    score: 141.9 bits;  conditional E-value: 1.5e-45
   TIGR03417 178 rekdarPfcltvslthPhdPyvirkkywdlyedeeillPevaleleeqdphskrllkaldlkek.....diteeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperle....agrveaavstv.......dllPtlvelagveleevlp.aldGeslvpllkgker..kdevlgeylaegsiaPl..valrrGkykfvkceadPe.qlydleadPkelenlaeepehaetlealraeaaarwd 441
                  e++a+Pf l vs++ Ph Py  ++++++   d   + P+ ++ +++ d++     +++++++      d+ ++ +  +r ay+++i++vd+ +G++ + leet l d t +vfv+dhGd lG++ lw k  f e+ a +P+ +  p+  +     + v a  st+       d+lPtl+++a+++ +++ +  +dG+s ++l+kg++   ++ +  e +a g  a +   al +Gk kfv++  d + +l++l++dP el+nla  +eha+ ++ ++a++ a+++
  MMETSP1174-20130828|2845_1  29 TENAAQPFFLKVSFIRPHSPYDPPERWFNYMVDRIDDIPRHQVGVDNWDQRFGIPSSICNMSNDdtycgDPGQDLVLLSRAAYYGSIAFVDEWFGHIWDKLEETSLLDRTFMVFVADHGDSLGDHNLWRKGYFTEQVASIPMYMRWPNSTRyestNKIVLARNSTIdavvelrDILPTLADVAKISFTTEQAvEIDGTSTLNLMKGEDVewREFIDLEMAACGFNASInwNALTDGKTKFVHSLYDGQvLLFNLTEDPYELRNLAGLSEHADLVSLWEAKMVANFK 314
                 56789************************99*****************9876555555555544111116788999********************************************************************9998543111123334444444222222379***********98777669*******999887641167788999**99999883358**************87368***********************999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 978.92
//
Query:       MMETSP1174-20130828|2847_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-11   40.3  28.4    8.5e-11   39.6  19.3    1.5  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
    0.00029   18.3  15.6     0.0091   13.4   2.0    2.1  2  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
      0.053   10.8  14.9      0.037   11.3   3.9    2.1  2  TIGR00688 rarD: protein RarD
      0.071   10.7   1.0       0.24    9.0   0.1    1.9  2  TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6  19.3   8.3e-14   8.5e-11       4     260 ..      10     281 ..       8     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 8.3e-14
   TIGR00950   4 tgvvikellesqlplyfavlrrlifallllLpllrlr...........nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGiv...lllsdg.....nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnl.qalpatslqwlallyLgligtllayf.lynkglkevdasaasilalleplvallLgllilgetlslvqliggalil 260
                 ++  +++ + ++ +l fa l+++++a+l+l +   +               +     l+l  ++++v  v ++la  ++++  aa+ + l P++++++ ++++ e++++ ++l++ +a+ G+     + +++      +++ l+G  l+l+  i++A+  v++k l k ++   +  +++ vl i+al+l+++  + + +   a    ++ +la++y ++   ++ +  ++  +++ ++as++s+  +lep+  ++L+  +l e ++ ++++g+al  
  MMETSP1174-20130828|2847_1  10 VFASYAISMTGANSLVFAFLMVVLAAVLALGTGAAVSfaelvqgmkatR-NEGHMLWLFLLGVNNAVKSVAFMLALGYVSALNAAIYIPLIPVFAIVFARAIGWETLNWGQVLGVSVAICGALevtFVKYASessqsGAANILIGNGLLLTWDITAAVAIVMQKPLLKYNS---PINVSAYVLTIAALVLAVVIPFVEHPTsSAWDIQTVTGLAIIYCAFYNCFMNFGdAW--AVTIIPASTVSMWLTLEPVFTAILSATFLDESMTSWEYLGAALTC 281
                 56667788889999**************997766666667999998743.3444445566679**********************************************************642112333332222233333444445566679*************8888...44444559***********99988766144556677888888888888888886355..7899************************************99865 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   3.5   5.9e-05      0.06     186     288 ..      29     130 ..      13     143 .. 0.75
   2 !   13.4   2.0   8.9e-06    0.0091      22     140 ..     172     294 ..     151     300 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.9e-05
   TIGR00817 186 ilfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafql.lervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGv 288
                  +++l+ +  + +g  + ++e++q+  k + ++    +l+++ g+  + + vaf+l l+ vs+l+ ++   l  v+ Iv++  +  + +++ qvlGv +ai G 
  MMETSP1174-20130828|2847_1  29 LMVVLAAVLALGTGAAVSFAELVQG-MKATRNEGHMLWLFLL-GVNNAVKSVAFMLaLGYVSALNAAIYIPLIPVFAIVFARAIGWETLNWGQVLGVSVAICGA 130
                 3344455555567778888888888.4455555544555555.599*********779***********9999999999986666667**************96 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 8.9e-06
   TIGR00817  22 kkllklf.hypvlktlvslavgvllellswssilkkrlkiskallklllpvaiv.....htighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlyl..sLlpivlGvalasltel 140
                 k llk+  +++v+  ++ +a +vl +++       + ++ s+  +++++++ai+     +   +   + ++  ++ S + +   lep+f+++ls+ fl +++++  yl  +L  + lG+ l s++++
  MMETSP1174-20130828|2847_1 172 KPLLKYNsPINVSAYVLTIAALVLAVVI----PFVEHPTSSAWDIQTVTGLAIIycafyNCFMNFGDAWAVTIIPASTVSMWLTLEPVFTAILSATFLDESMTSWEYLgaALTCVGLGIVLYSVDKT 294
                 5555553133333334444444444444....35666777777777777777762111134556667789**************************************8788888889999888775 PP

>> TIGR00688  rarD: protein RarD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.9   3.6e-05     0.037      37     142 ..      24     135 ..      16     152 .. 0.82
   2 ?    5.0   1.2    0.0032       3.3      23     139 ..     174     286 ..     162     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.6e-05
   TIGR00688  37 vifsfvfvvvvlsll..r....qkailierlkslqkrglilslllaavliginwllfiWavnngslleaslGylinPlvsvvlGivflkeklsrlklvaviiailGvivsiv 142
                 ++f+f++vv+  +l          a l++ +k+ + +g +l l+l +v  +++   f+ a    s l+a++   + P+  +v  +    e l+  + + v++ai+G +   +
  MMETSP1174-20130828|2847_1  24 LVFAFLMVVLAAVLAlgTgaavSFAELVQGMKATRNEGHMLWLFLLGVNNAVKSVAFMLALGYVSALNAAIYIPLIPVFAIVFARAIGWETLNWGQVLGVSVAICGALEVTF 135
                 567777766654443112111134567788888888899********************************999********************************985444 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0032
   TIGR00688  23 llkqlpatdilahrvifsfvfvvvvlsllrqkailierlkslqkrglilslllaavliginwllfiWavnngslleaslGylinPlvsvvlGivflkeklsrlklvaviiailGviv 139
                 llk+ +  ++ a+ +  + + + vv+ ++   +     ++++      l+++ +a    +  +   Wav       +s+   + P+ + +l   fl e +   +++   ++ +G+ +
  MMETSP1174-20130828|2847_1 174 LLKYNSPINVSAYVLTIAALVLAVVIPFVEHPTSSAWDIQTVTG----LAIIYCAFYNCFMNFGDAWAVTIIPASTVSMWLTLEPVFTAILSATFLDESMTSWEYLGAALTCVGLGI 286
                 66666666677776666666666777777776666667777766....667778888888888889****99999*******************************99999988654 PP

>> TIGR01545  YfhB_g-proteo: HAD hydrolase, family IF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.15   1.6e+02      39      78 ..      24      63 ..      10      81 .. 0.59
   2 ?    9.0   0.1   0.00023      0.24      33      89 ..      88     139 ..      77     146 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.15
   TIGR01545 39 lvlpllpliavallvkgraarwpmslllwaltfgrrearl 78
                lv+ +l ++  a+l  g  a   ++ l+ ++   r+e ++
  MMETSP1174-20130828|2847_1 24 LVFAFLMVVLAAVLALGTGAAVSFAELVQGMKATRNEGHM 63
                3444555555555555556666666666666666666554 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00023
   TIGR01545  33 lplnlllvlpllpliavallvkgraarwpmslllwaltfgrrearlrdleadfvaaf 89 
                   ln+ + +pl+p+ a+   v  ra  w    l w+  +g + a    le+ fv++ 
  MMETSP1174-20130828|2847_1  88 SALNAAIYIPLIPVFAI---VFARAIGWE--TLNWGQVLGVSVAICGALEVTFVKYA 139
                 57899999999999987...668***996..699********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 973.42
//
Query:       MMETSP1174-20130828|2853_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   45.8   0.0    3.9e-06   24.3   0.0    3.5  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    9.7e-06   23.2   0.1    0.00023   18.7   0.0    2.4  3  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    0.00029   18.2   0.0       0.28    8.4   0.0    2.5  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0085   13.3   0.0      0.017   12.3   0.0    1.4  1  TIGR03611 RutD: pyrimidine utilization protein D
  ------ inclusion threshold ------
      0.034   11.2   0.0      0.091    9.8   0.0    1.6  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0062       5.1       6      53 ..      33      82 ..      24      96 .. 0.78
   2 !   24.3   0.0   4.8e-09   3.9e-06      78     113 ..     133     168 ..     126     186 .. 0.89
   3 !   12.9   0.0   1.4e-05     0.012     182     249 ..     269     348 ..     265     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0062
   TIGR02427  6 legaeadkpvlvlinSLGtdlrlwdkvlealtkd..frvlryDkrGHGlS 53
                 + + ++ p +vl+n +G  l  w+  +  l++     v ++D  G G S
  MMETSP1174-20130828|2853_1 33 QDNPITSSPPVVLLNGFGVGLFHWERNVIPLSEMtgSTVFAMDYVGQGDS 82
                445556899*****************9999987511589999**999998 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 4.8e-09
   TIGR02427  78 iekaavcGlSlGGliaqaLaarrpdrvealvlsnta 113
                 i+k ++cG SlGGl+a  La+rrpd+v+++vl+n +
  MMETSP1174-20130828|2853_1 133 ISKCVICGNSLGGLLATLLAVRRPDLVDSIVLLNPT 168
                 7899****************************9966 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 1.4e-05
   TIGR02427 182 dadlrerleeiavPtlviaGdeDgstPpelvreia............dlvpgarfaeieeaaHlpnleqpeafaallrdf 249
                 ++d++e +++++  +l++ G+eD+ + p+  r++             ++ p  ++ e++ ++H p  e+pea +a+++++
  MMETSP1174-20130828|2853_1 269 KMDFYELIGQVECDVLLLYGREDPWCSPAFGRRTMralqerkpvrmtSSFPRQTYCELSPCGHCPHHEAPEATNAIITRW 348
                 68**********************99998665544111111111111456888999******************998765 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.1   1.7e+03       7      44 ..      43      82 ..      40      85 .. 0.73
   2 !   18.7   0.0   2.8e-07   0.00023      66     101 ..     135     170 ..     121     174 .. 0.89
   3 ?    1.7   0.0     0.044        36     177     217 ..     269     309 ..     261     321 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.1
   TIGR01738  7 lvLihGWglnaevfadlveeLsah..ftlslvDLPGyGds 44
                +vL+ G+g+    ++  v  Ls+    t++++D  G Gds
  MMETSP1174-20130828|2853_1 43 VVLLNGFGVGLFHWERNVIPLSEMtgSTVFAMDYVGQGDS 82
                7899999998888888887777652257888888888875 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.8e-07
   TIGR01738  66 kaiwlGWsLGGLvalhlalthpdkvrsLvlvasspk 101
                 k ++ G sLGGL+a+ la++ pd v s+vl+  +p 
  MMETSP1174-20130828|2853_1 135 KCVICGNSLGGLLATLLAVRRPDLVDSIVLLNPTPV 170
                 5899**************************988875 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.044
   TIGR01738 177 evDlRralqkisvPvLrlyGqkDalvPakvvealdklapqs 217
                 ++D  + + +++  vL+lyG+ D    ++ ++   + +++ 
  MMETSP1174-20130828|2853_1 269 KMDFYELIGQVECDVLLLYGREDPWCSPAFGRRTMRALQER 309
                 6788899999*************988777766665555544 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00034      0.28      69     102 ..     132     165 ..     119     169 .. 0.89
   2 !    7.0   0.0   0.00088      0.72     216     250 ..     314     348 ..     309     350 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00034
   TIGR03695  69 kiekviLvGYSlGGRialalaleaperleglile 102
                  i+k++++G SlGG +a+ la++ p+ + +++l 
  MMETSP1174-20130828|2853_1 132 PISKCVICGNSLGGLLATLLAVRRPDLVDSIVLL 165
                 5789************************999986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00088
   TIGR03695 216 mqkllpalklevieeaGHnihlenpeafakileef 250
                 m++ +p+ ++  ++ +GH+ h+e pea ++i++++
  MMETSP1174-20130828|2853_1 314 MTSSFPRQTYCELSPCGHCPHHEAPEATNAIITRW 348
                 777889999999******************99987 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.1e-05     0.017      79     112 ..     133     166 ..     128     172 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   TIGR03611  79 iekahvvGhalGgliglelalrkperlaklvlin 112
                 i+k+ + G +lGgl++  la r+p+ ++++vl+n
  MMETSP1174-20130828|2853_1 133 ISKCVICGNSLGGLLATLLAVRRPDLVDSIVLLN 166
                 8899****************************99 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00011     0.091     100     136 ..     133     169 ..     122     179 .. 0.90
   2 ?   -2.8   0.0      0.77   6.3e+02     215     243 ..     272     300 ..     244     345 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
   TIGR03343 100 iekahlvgnsmggatalnfaleypdrlgklilmgpgg 136
                 i k+ + gns+gg  a  +a+  pd ++ ++l+ p+ 
  MMETSP1174-20130828|2853_1 133 ISKCVICGNSLGGLLATLLAVRRPDLVDSIVLLNPTP 169
                 889999***************************9985 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.77
   TIGR03343 215 vvdrlgeikaktlvtwgrddrfvpldhgl 243
                   + +g+++   l+ +gr+d +     g 
  MMETSP1174-20130828|2853_1 272 FYELIGQVECDVLLLYGREDPWCSPAFGR 300
                 55566777777777777777665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1377.84
//
Query:       MMETSP1174-20130828|2860_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   10.8   6.1       0.02   10.4   4.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.033   11.0   2.2      0.046   10.5   1.5    1.2  1  TIGR00998 8a0101: efflux pump membrane protein
      0.056    8.9   5.0      0.073    8.5   3.4    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.2   1.5e-05      0.02     234     286 ..      47      99 ..      33     143 .. 0.45

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.5e-05
   TIGR02168 234 leelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleel 286
                 + ++k++ e++e++l++ae+ lee e el+e+e+el++ ++e+++ +++l + 
  MMETSP1174-20130828|2860_1  47 WAQAKQKAEKAEKKLTRAESALEECELELEECEQELDQSKHEHAQCHSALLQC 99 
                 12222222222222222222222222222222222222222222222222222 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.5   3.4e-05     0.046     117     180 ..      47     123 ..      29     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.4e-05
   TIGR00998 117 leqareklkqaeldleRresllkkgliskEeldrarkallsakaaLeaaiqe.............aeaAnqalvrve 180
                  +qa++k+ +ae +l R es l++  ++ Ee ++ ++  ++++a+   a+ +             +e+ ++al++ +
  MMETSP1174-20130828|2860_1  47 WAQAKQKAEKAEKKLTRAESALEECELELEECEQELDQSKHEHAQCHSALLQcqgvlqsngvlsgQEQCRKALLMCQ 123
                 57888888999999999999999999999999999999999999999888877777777777777666666665543 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.4   5.4e-05     0.073     453     503 ..      42      92 ..      34     118 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5.4e-05
   TIGR02169 453 kaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakas 503
                 ++eq   q+k++ ekaek+l + ++ le+ e el+e e+el++ + ++ ++
  MMETSP1174-20130828|2860_1  42 QDEQIWAQAKQKAEKAEKKLTRAESALEECELELEECEQELDQSKHEHAQC 92 
                 333333344444444444444444444444444444444444333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1048.78
//
Query:       MMETSP1174-20130828|2862_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-13   44.8   0.0    7.9e-13   44.8   0.0    1.8  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    4.5e-10   36.4   0.0    4.5e-10   36.4   0.0    2.3  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.2e-08   30.7   0.0    0.00013   18.2   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.2e-08   30.2   8.4    8.2e-08   29.3   0.0    2.9  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      5e-06   23.3   0.0      5e-06   23.3   0.0    2.8  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
      8e-06   22.2   0.0      8e-06   22.2   0.0    2.2  2  TIGR00631 uvrb: excinuclease ABC subunit B
    0.00046   16.4  11.9     0.0019   14.4   0.0    2.2  2  TIGR00580 mfd: transcription-repair coupling factor
     0.0056   13.5   0.0     0.0056   13.5   0.0    2.9  3  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.5e-15   7.9e-13      22     345 ..     101     428 ..      85     442 .. 0.76
   2 ?   -6.0   2.9       3.7   1.9e+03     646     685 ..     571     610 ..     549     641 .. 0.58

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.5e-15
   TIGR04121  22 leaaeegesgll.iapTGaGKTlavflpsliela........akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlap..elrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeik...karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGsp...kgvaRllQRiGRsnH 345
                 +    +g+  l+  a TG+GKT a  lp+ + +         ++ ++ +  +vl ++P + La +ie   e+   + +l++ v    G ++++++ +q ++  diL+ Tp  l+ +l +      +++ +++v+DE   +l      +l+  + r   l p  + +++  sAT  n ++++a+  l+  +  ++  v + ++++++ + ++      +P + +  +++l  vl+e +   +   t++F+  +  a  + ++L++++  + +ei   Hg  +++qRe   + +k+gk+ ++vcT     G+D  +v  v+++  p         + RiGR++ 
  MMETSP1174-20130828|2862_1 101 IPLSLDGRADLMcCAQTGSGKTAAFLLPACALVSqsrpleppRNGQTPARPRVLVLAPTRELAIQIELEAEKLTFDSRLNCVVV--YGGAPAKSQLKQLARGVDILVATPGRLTDFLERGL--VSLAHAQILVLDEADRMLDMGFEPQLKRIVQRS-DLPPreSRKTLMFSATFPNeIQRLASSYLRPYAYVTVGRVGS-TTESITQRLIVA----PIPSK-QAKMELLVGVLKESQcqeDGARTMIFVQKKHTASWVRKELTKKHGITGEEI---HGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMDLPvskEDFDSYVHRIGRTGR 428
                 5555566655542799***********987766666888776555666889****************99999999888888775..699*************************9997765..5689999***********998777777666664.44441145677889*996524555555555555344444444.333333333333....34533.4455666666665441114568*********************99988888...*********************************************866221456778999999875 PP

  == domain 2    score: -6.0 bits;  conditional E-value: 3.7
   TIGR04121 646 lellsaeevdleellleellsedkLeddleeslneselak 685
                 l++ ++++++ +++++++l +++  ++++ + + +++l +
  MMETSP1174-20130828|2862_1 571 LQMQQQQQLHHHQQQQQQLAQQQWSQQQMAQHIRQQQLHQ 610
                 3444444444444444444444444444444444444444 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.2   5.9e+02      10      50 ..      89     130 ..      86     133 .. 0.76
   2 !   36.4   0.0   8.7e-13   4.5e-10     102     328 ..     199     439 ..     188     442 .. 0.82
   3 ?   -6.9   7.4         8   4.1e+03     440     507 ..     575     645 ..     561     666 .. 0.35

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.2
   TIGR01389  10 GyeeFRggqeeiieevldgr.dvlavlPtGGGkslCYqvPaL 50 
                 Gy +  + q   i   ldgr d++    tG Gk   + +Pa 
  MMETSP1174-20130828|2862_1  89 GYRKPTPIQRWSIPLSLDGRaDLMCCAQTGSGKTAAFLLPAC 130
                 7777777777666666666538999999*******9999985 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 8.7e-13
   TIGR01389 102 gelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap..vialtatadaevredivekLe......lkdaaefvssfdRenlafsvvkkenkkkqlleylkkere....ksGiiYassRkkveelaeaLesk.giealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlP...knlesyyqeaGRaGRDGlkaeailly 328
                   +++L  +P rl     + l++  + ++l +Dea  +   G  F p+ kr+++  +  p++    + + at  +e+++   ++L+      +    +  +s+  + ++  +  k+ k + l+  lk+ +        +i+ + ++    + + L++k gi+    h+  s+++R+ a+++F   +v v+v t     G+d + v +v+ +dlP   ++ +sy    GR GR G+   a  ly
  MMETSP1174-20130828|2862_1 199 RGVDILVATPGRLTDFLERGLVSLAHAQILVLDEADRMLDMG--FEPQLKRIVQRSDLPPRESrkTLMFSATFPNEIQRLASSYLRpyayvtVGRVGSTTESITQRLIVAPIPSKQAKMELLVGVLKESQCqedgARTMIFVQKKHTASWVRKELTKKhGITGEEIHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMDLPvskEDFDSYVHRIGRTGRAGNLGLATSLY 439
                 458999999999998888888888999999******999998..89*********999998875578889999999999888877633322255666778889999999999999999999999998765431124569************999976439******************************************************44335678999999999999877666666 PP

  == domain 3    score: -6.9 bits;  conditional E-value: 8
   TIGR01389 440 kfdklstyGig......kdlsekelrslid..qliaeglleeddeeysalqleeavkkvlkeevevllrekkvvkk 507
                 ++++l  +         ++ s++++ + i+  ql ++++l++++     + +++ +++  ++  ++  ++++++++
  MMETSP1174-20130828|2862_1 575 QQQQLHHHQQQqqqlaqQQWSQQQMAQHIRqqQLHQQNYLYQQH-----MAQQYMAQQQQQQYYQLHQQQQQQQQQ 645
                 33333333222000000222333333333211233333333332.....122222222222222222222222222 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.6e-07   0.00013      24     117 ..      80     188 ..      73     227 .. 0.75
   2 !   10.0   0.0   7.4e-05     0.038     269     379 ..     329     435 ..     318     439 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.6e-07
   TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGeh.vvvatgtasGkslayllPvlsalaedp............ratalylaPtkalaadqlravkelee..rdvraatydGd 117
                  + +++e+ G ++p   q     l+ +G+   + ++ t sGk+ a+llP+ + +++++            r ++l laPt+ la       ++l+   r   + +y G 
  MMETSP1174-20130828|2862_1  80 FLLQNVERMGYRKPTPIQRWSIPLSLDGRAdLMCCAQTGSGKTAAFLLPACALVSQSRplepprngqtpaRPRVLVLAPTRELAIQIELEAEKLTFdsRLNCVVVYGGA 188
                 46788999999999999999999*****971555678**************999999445556667777799************9888888888763222233445554 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 7.4e-05
   TIGR03817 269 aegvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtv...aslwqqaGraGrrgqdalv 379
                 ++g+rt++fv+ +++a  v    +++l++ +   +e +   r+     +r    +++kdG++  +++t+    G+d+  +  vv    P  +    s+  ++Gr+Gr+g+  l+
  MMETSP1174-20130828|2862_1 329 EDGARTMIFVQKKHTASWV----RKELTKKHGITGEEIHGDRSQ---AQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMDLPVSKedfDSYVHRIGRTGRAGNLGLA 435
                 6899******999888776....566666666677777777774...4555566899********************************8762226889999999999988776 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0038         2       7      49 ..      88     131 ..      82     136 .. 0.90
   2 !   29.3   0.0   1.6e-10   8.2e-08     222     331 ..     327     440 ..     272     444 .. 0.84
   3 ?   -6.0   4.3         8   4.1e+03     350     402 ..     574     625 ..     560     663 .. 0.44

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0038
   TIGR00614   7 fglesfrpvqlevinavlegr.dalvvmatGgGksLCyqlpavv 49 
                  g+++  p q   i   l gr d +    tG Gk   + lpa+ 
  MMETSP1174-20130828|2862_1  88 MGYRKPTPIQRWSIPLSLDGRaDLMCCAQTGSGKTAAFLLPACA 131
                 688899999999*********9999999**************96 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.6e-10
   TIGR00614 222 kefkgksGiiYClsrkkveqvaaeLqk.kglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslp...ksiesYYqesGRaGRDglksecvlfya 331
                  + +g+  +i+ + ++++  v +eL+k +g++    h + ++++r++  ++f   ++ v+v t     G++ p v +v+ ++lp    + +sY   +GR GR g    ++ +y 
  MMETSP1174-20130828|2862_1 327 CQEDGARTMIFVQKKHTASWVRKELTKkHGITGEEIHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMDLPvskEDFDSYVHRIGRTGRAGNLGLATSLYV 440
                 556677779***************975269*********************************9999****************933335679**********999888877775 PP

  == domain 3    score: -6.0 bits;  conditional E-value: 8
   TIGR00614 350 kreyklkllekvekyensskCRRlillsyfeekqlkkasskkgteksCdnCkk 402
                 +++ +l+  ++ ++ +  ++  +++++++  ++ql+++    +++++ +    
  MMETSP1174-20130828|2862_1 574 QQQQQLHHHQQQQQQLAQQQWSQQQMAQHIRQQQLHQQNY-LYQQHMAQQYMA 625
                 3333344444444444455555556666665555543332.222222222221 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.23   1.2e+02     287     345 ..     153     207 ..     117     268 .. 0.64
   2 !   23.3   0.0   9.7e-09     5e-06     487     534 ..     361     408 ..     337     429 .. 0.87
   3 ?   -6.8  10.4         8   4.1e+03     158     227 ..     576     642 ..     544     663 .. 0.48

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.23
   TIGR00643 287 valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGT 345
                 v+++aPT  LA Q   ++++l  +  ++  ++ g   +k+   +l+++a G ++++v T
  MMETSP1174-20130828|2862_1 153 VLVLAPTRELAIQIELEAEKLTFDSRLNCVVVYGGAPAKS---QLKQLARG-VDILVAT 207
                 5666777777777666666665555555555555444333...23334433.3444444 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 9.7e-09
   TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  +hg  +++++e++l++F++++v++Lv+T v   G+dvP+++ +v +d
  MMETSP1174-20130828|2862_1 361 EIHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMD 408
                 58***************************************9998765 PP

  == domain 3    score: -6.8 bits;  conditional E-value: 8
   TIGR00643 158 lrekykllsleealkaiHepetleekelarkrlifeellllqlallarrleekkqqsaksvavseellek 227
                  ++ +++ ++++ l++    +++ +++  +++l  +++l+ q + ++ ++++++q +    ++++++ ++
  MMETSP1174-20130828|2862_1 576 QQQLHHHQQQQQQLAQQQWSQQQMAQHIRQQQLHQQNYLYQQHMAQQYMAQQQQQ-QY--YQLHQQQQQQ 642
                 1222333333333444334444444555555555555555554444444443222.11..1111111111 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-08     8e-06     438     541 ..     326     428 ..     302     441 .. 0.79
   2 ?  -10.2   9.9         8   4.1e+03     594     637 ..     567     612 ..     539     653 .. 0.43

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.6e-08
   TIGR00631 438 ervaknervlvttltkkmaedlt.dylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                 ++++ + r+++ +  k+ a  +  +  k++gi  + +h +    +r + ++ +++g++ vlv  ++   GlD+P vs v  +D        +  s +  iGr  r
  MMETSP1174-20130828|2862_1 326 QCQEDGARTMIFVQKKHTASWVRkELTKKHGITGEEIHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMDLPVS--KEDFDSYVHRIGRTGR 428
                 455667899999999999998862456789*************************************************99985432..3445677777777766 PP

  == domain 2    score: -10.2 bits;  conditional E-value: 8
   TIGR00631 594 lekkekekekeakkkkkk..aaeeaeklsekelkklikklekemke 637
                  e++ + +++++ +++++  ++  +++ s+++++++i++ + + ++
  MMETSP1174-20130828|2862_1 567 KEQQLQMQQQQQLHHHQQqqQQLAQQQWSQQQMAQHIRQQQLHQQN 612
                 3322222222211111110012223333344444444332222222 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-06    0.0019     690     730 ..     362     402 ..     357     408 .. 0.93
   2 ?    0.3   7.9     0.067        34     140     213 ..     573     646 ..     517     681 .. 0.46

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.8e-06
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaN 730
                 +Hg  ++ + e+ +++F+++++ vLvcT +   G+d+p++ 
  MMETSP1174-20130828|2862_1 362 IHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVS 402
                 69999999******************************986 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.067
   TIGR00580 140 ekvekaaeelereleefleaaleakklisae.rlsleveelvleakalslsevelesalslkaseaieaaqeaer 213
                  +++++ ++ +++ +++ +++++++++ +++ +++l++++ + + + +  + + +++++++++ ++ +++q++++
  MMETSP1174-20130828|2862_1 573 MQQQQQLHHHQQQQQQLAQQQWSQQQMAQHIrQQQLHQQNYLYQ-QHMAQQYMAQQQQQQYYQLHQQQQQQQQQQ 646
                 11111122222233333333444443333332222222222111.111111111111111222221111111111 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.018       9.1      32      80 ..     116     176 ..      83     236 .. 0.76
   2 !   13.5   0.0   1.1e-05    0.0056     288     379 ..     331     425 ..     307     431 .. 0.79
   3 ?   -7.4   5.2         8   4.1e+03     268     334 ..     599     638 ..     560     658 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.018
   TIGR04095  32 atGtGktltaLalvskl............aekikslvvvvvvPykhLveqWakeaekFgle 80 
                  tG+Gkt   L  + +l             ++  +  v+v++P ++L+ q   eaek  ++
  MMETSP1174-20130828|2862_1 116 QTGSGKTAAFLLPACALvsqsrplepprnGQTPARPRVLVLAPTRELAIQIELEAEKLTFD 176
                 59*****98777666665555888877655555667899****************998765 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.1e-05
   TIGR04095 288 gktedekeeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiL...asssnPrqFiqRRGR 379
                 g  + +  ++++  + v k l +++g++ ++     s+++Re+ l++f++g++ +lv       G+DvP++ + + +    s ++   ++ R GR
  MMETSP1174-20130828|2862_1 331 GARTMIFVQKKHTASWVRKELTKKHGITGEEIHGDRSQAQRESALQRFKDGKVSVLVCTDVAARGLDVPHVSHVVNMdlpVSKEDFDSYVHRIGR 425
                 5555555666777788999999************************************************9887643111345555556666666 PP

  == domain 3    score: -7.4 bits;  conditional E-value: 8
   TIGR04095 268 LkkllskreeesktlvYcgdgktedekeeeerqidevvkllgeelglrvktftaeeskeeReellkq 334
                 + + + +++ ++++ +Y  +                            ++++ a++++++  +l +q
  MMETSP1174-20130828|2862_1 599 MAQHIRQQQLHQQNYLYQQHM---------------------------AQQYMAQQQQQQYYQLHQQ 638
                 222222222222222222221...........................2223333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       764  (0.186251); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.03u 0.26s 00:00:01.29 Elapsed: 00:00:00.91
# Mc/sec: 1160.34
//
Query:       MMETSP1174-20130828|2866_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1174-20130828|2871_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|2868_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-09   32.1   0.0    7.3e-09   31.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      0.002   16.0   0.0     0.0041   15.0   0.0    1.4  1  TIGR00754 bfr: bacterioferritin


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   3.6e-12   7.3e-09       3     185 ..     100     275 ..      98     280 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.6e-12
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtG 185
                 g++ ++k++R++        +R   ei + +rL hP + ++      e++ +  v+ + +Gr l  ++      Lp      ++   +D la  h +Gv h DL Pq i+v +++  +   v   G g++l +  +     +       GsP +a Pe + g      k+D ++ G ++   + G
  MMETSP1174-20130828|2868_1 100 GEQCVVKIIRNK--RTISDAQRINSEIGILQRLGHPFLNRIY-GCWIEPDHMCVVYKH-AGRDLNCLMDDYpEGLPERLLHPILRSLVDILAYTHTRGVAHGDLNPQHILVDTNNGYRSITVKVSGFGSILDENLE-----IHPHLKSFGSPGFAGPEIINGGGWdFMKADAWSLGCVLNAAMIG 275
                 567899****99..66778899**************998876.5678888999***99.7****998876414578877888888999*******************************99999999999987666.....66777899*********998865415677777777666555555 PP

>> TIGR00754  bfr: bacterioferritin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     2e-06    0.0041      48     102 ..     286     340 ..     274     347 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-06
   TIGR00754  48 sidemkhadelierillleGlPnlqdlgklliGedveelleadlaleldvlddlk 102
                  +d+++  ++ i+ri +l+Gl   q+l  ++  +++ +++ea l +e   ++ ++
  MMETSP1174-20130828|2868_1 286 IFDNIHLVESEIDRIDFLDGLTTAQRLCAVHWPDTLANVVEACLRIEPRDRPAVR 340
                 58899999*************************************9987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.59
# Mc/sec: 821.02
//
Query:       MMETSP1174-20130828|2874_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|2879_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.60
# Mc/sec: 235.38
//
Query:       MMETSP1174-20130828|2881_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 345.50
//
Query:       MMETSP1174-20130828|2893_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|2892_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-47  159.5   0.3    1.7e-47  159.3   0.2    1.0  1  TIGR03653 arch_L6P: archaeal ribosomal protein L6P
    6.8e-13   46.6   0.1    9.6e-13   46.1   0.1    1.2  1  TIGR03654 L6_bact: ribosomal protein L6


Domain annotation for each model (and alignments):
>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.2   8.1e-51   1.7e-47       3     169 ..       9     180 ..       7     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 159.3 bits;  conditional E-value: 8.1e-51
   TIGR03653   3 eieiPegvsvsieknevkvkgpkgeverelkypkieis..veddkvvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkvegnkvvienflGekaprtakilkdvk.vkvk..geevvvegidkEkvgqtaanieqatkikgkdrrvfqDGiyive 169
                  +e Pegv+v++e ++++v+g++g+++r++k+ +++i+  v + k+ ++    ++k+ a ++t+ sh++nmi+Gv+ gf yk++ vY+HFP++v v+g+ v+i nf+Gek+ r+ ++ ++v+ v+    ++++ ++g d+ +v+ taa i+qa++i++kd r f DGiy+  
  MMETSP1174-20130828|2892_1   9 FVEYPEGVTVDVESRTITVTGKRGTLTRSFKHLRLDITpiVAERKLRFDLWWGNRKQLACIRTVCSHVENMITGVQVGFLYKMRFVYSHFPINVAVAGEAVEIRNFMGEKRVRRVTVSEGVTaVRTAdvKDQLELSGNDITTVSLTAARIQQACNIRHKDIRKFLDGIYVSA 180
                 5899****************************9977764499*****************************************************************************9862444312459*************************************976 PP

>> TIGR03654  L6_bact: ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   4.7e-16   9.6e-13       6     149 ..       8     160 ..       4     171 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 4.7e-16
   TIGR03654   6 kpieipagvevkvegekvtvkgpkgelslklkee...vkvkvednkivvkrkedskeakalhGltralinnmveGvseGfekkLelvGvGY..raqlkgkklels..lGyshpveveipegikveve..kqteivvkgidkqkvgqvaaeira 149
                 + +e p+gv+v+ve++++tv+g++g+l++++k+    ++  v+++k+ ++    ++++ a+  ++ + ++nm++Gv+ Gf  k++ v   +   +++ g+++e++  +G     +v++ eg+++  +   + ++ ++g d  +v  +aa+i++
  MMETSP1174-20130828|2892_1   8 RFVEYPEGVTVDVESRTITVTGKRGTLTRSFKHLrldITPIVAERKLRFDLWWGNRKQLACIRTVCSHVENMITGVQVGFLYKMRFVYSHFpiNVAVAGEAVEIRnfMGEKRVRRVTVSEGVTAVRTadVKDQLELSGNDITTVSLTAARIQQ 160
                 6799**************************977333377789*****************************************999877662267789999999644888888899******97654126799*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 539.43
//
Query:       MMETSP1174-20130828|2898_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   18.6   0.1     0.0011   17.0   0.1    1.9  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.8e-07    0.0011      58     103 ..      64     112 ..       9     114 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.8e-07
   TIGR01126  58 taekelaskfkv..sgfPtlkffkkgkkepvdyeGeRe.aeelvefvee 103
                 + +++l ++f+v  + fP  k+f++g++ep+dy+G+++  +++ +fve+
  MMETSP1174-20130828|2898_1  64 QLNQDLHKRFNVdeKNFPEYKLFTRGSDEPIDYTGSKTsRKQVLKFVED 112
                 5678999999995458*******************87516789999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 694.51
//
Query:       MMETSP1174-20130828|2900_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-60  200.5   0.7    4.7e-60  200.2   0.5    1.0  1  TIGR01383 not_thiJ: DJ-1 family protein
    3.3e-24   83.2   0.0      4e-24   82.9   0.0    1.1  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.5   2.3e-63   4.7e-60       2     179 ..      56     231 ..      55     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: 200.2 bits;  conditional E-value: 2.3e-63
   TIGR01383   2 vlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksledveeeefDvivLpGGlpGaenlkdsklleellkkq.eskgklvAAICaaPivllaaevllgkkkatcypslkekllneeysvekavvvdgkliTsrGpgtaieFalelvelLaGkevaeevak 179
                 vl+++a+G+Ee+E+  ++d+L+R+g+ v+  ++s++++l+v++srg+k++ad++++d+ee+e+D+iv pGG+pGae+l+ds++l+++lk+q +++ ++vAA+CaaP+v+la +++l++kkatcyp  +    + e  v++ vv+dg+++TsrGpgt++ Fa++lve+L+G e+a+e+++
  MMETSP1174-20130828|2900_1  56 VLVPIASGSEEIETTCIADTLVRSGATVV--LASVDESLTVTCSRGIKIVADRTIADCEESEWDLIVCPGGMPGAEHLRDSETLTRMLKRQvADESRFVAAVCAAPAVVLAYHGILQGKKATCYPAQQ-FTSALEHPVDEDVVIDGNVVTSRGPGTSLSFAIKLVETLYGAEKAKEISE 231
                 89**********************99999..7777899**************************************************987256789****************************433.333446669999***********************************976 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.9e-27     4e-24       2     168 ..      56     220 ..      55     221 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.9e-27
   TIGR01382   2 llvlaedefedeEllePlkalkeaGheVtvvsgkekgeivkekkgakvtvdatlddvdaeeydalvipGGra.peylrldekvielv.refaekgKpvaaIChgp.qlLisAdvlrGkkltaypaiaedvknAGaeyvdirevvvvdanlvtakvpadlpafvseilkll 168
                 +lv ++ + e++E++  +++l ++G++V ++s  e  +++   +g k+  d+t+ d +++e+d++v pGG   +e+lr  e + ++  r++a++ + vaa+C +p ++L+  ++l+Gkk+t+ypa  ++ + A  + vd    vv+d+n+vt++ p+    f  ++++ l
  MMETSP1174-20130828|2900_1  56 VLVPIASGSEEIETTCIADTLVRSGATVVLASVDESLTVTC-SRGIKIVADRTIADCEESEWDLIVCPGGMPgAEHLRDSETLTRMLkRQVADESRFVAAVCAAPaVVLAYHGILQGKKATCYPA--QQFTSALEHPVDE--DVVIDGNVVTSRGPGTSLSFAIKLVETL 220
                 678889999***********************777777777.9****************************98******9999876528999***********98357999*************8..6789999999995..7**************9999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 680.03
//
Query:       MMETSP1174-20130828|2903_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   21.7   0.1    2.2e-05   21.5   0.1    1.1  1  TIGR00225 prc: C-terminal processing peptidase
    2.7e-05   21.0   1.0    3.1e-05   20.8   0.7    1.0  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
    0.00089   15.1   0.0     0.0011   14.8   0.0    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
     0.0018   15.1   0.6     0.0031   14.3   0.3    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   2.1e-08   2.2e-05      58     122 ..      66     134 ..      45     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.1e-08
   TIGR00225  58 qmeddeivivsplegsPAekagikpgDkIikvdgksvagmelddav....elirGkkgtkvkleierag 122
                 ++e++ +vi ++ ++s Aekag+kp   ++k++g+s++ m  +da+    ++++ k g  v + i+++ 
  MMETSP1174-20130828|2903_1  66 NSEQQVMVIHTVSQKSLAEKAGVKPLHVLLKINGASTTQMTEQDAIvafdDALKKKTGFTVTVGILPSS 134
                 5677889999999*************************9998888744445789999999999998874 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.7     3e-08   3.1e-05     155     287 ..      22     158 ..      11     173 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3e-08
   TIGR00054 155 dgkkikdfkdvrkqlaekagevsveilaerenitleeeke.lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrd......lvklvkenpeksleikveRngetlslklvpeakgkigvglspklkkle 287
                  ++ki+   + ++  ++   e ++ i+  ++n tl  +   +    ++  +v+++v + s aekaG+k+   +lki+g   ++ ++      ++ ++k++ + ++ + +    +t++  +  + +   g+ +sp  ++++
  MMETSP1174-20130828|2903_1  22 SDNKIELIANEWNNPKKDSMEQVLSISPPKNNKTLGMKFIvMFANSEQQVMVIHTVSQKSLAEKAGVKPLHVLLKINGASTTQMTEqdaivaFDDALKKKTGFTVTVGILPSSQTFQRAIGSNVE---GLRFSPRTQRVR 158
                 556666666666666666678888888899999999886646678999******************************99888766111111333445544444555444444444444433333...357777777776 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-06    0.0011     150     194 ..      68     113 ..      56     138 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
   TIGR03900 150 drkltVlrvl.petPAaraGlkakDrivkideestvnmdlndavdr 194
                 +++++V++ + +++ A++aG+k   +++ki+  st +m+ +da+  
  MMETSP1174-20130828|2903_1  68 EQQVMVIHTVsQKSLAEKAGVKPLHVLLKINGASTTQMTEQDAIVA 113
                 677888876626789****************************854 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3     3e-06    0.0031     255     302 ..      66     113 ..      52     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3e-06
   TIGR02037 255 lekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaig 302
                  ++++  ++ +v ++s AekaG+k   v+lk+ng + +++++  + ++
  MMETSP1174-20130828|2903_1  66 NSEQQVMVIHTVSQKSLAEKAGVKPLHVLLKINGASTTQMTEQDAIVA 113
                 456667778888899999999999999999999988888877666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 584.05
//
Query:       MMETSP1174-20130828|2906_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.4   5.5       0.34    9.1   1.4    2.3  2  TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats


Domain annotation for each model (and alignments):
>> TIGR03057  xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1    0.0096        40       9      22 ..      10      23 ..       9      23 .. 0.81
   2 ?    9.1   1.4   8.4e-05      0.34       9      22 ..      34      47 ..      33      47 .. 0.56

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0096
   TIGR03057  9 gqLasGagqLasGa 22
                g+ ++G+  ++sGa
  MMETSP1174-20130828|2906_1 10 GTFTDGTMSISSGA 23
                56789999999997 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.4e-05
   TIGR03057  9 gqLasGagqLasGa 22
                g+L++G++ L+ Ga
  MMETSP1174-20130828|2906_1 34 GTLTDGTASLTGGA 47
                56666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|2907_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|2908_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 310.81
//
Query:       MMETSP1174-20130828|2904_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-33  113.6   7.5    4.7e-33  112.7   5.2    1.4  1  TIGR03520 GldE: gliding motility-associated protein GldE


Domain annotation for each model (and alignments):
>> TIGR03520  GldE: gliding motility-associated protein GldE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   5.2   1.1e-36   4.7e-33       2     325 ..      35     361 ..      34     389 .. 0.79

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 1.1e-36
   TIGR03520   2 illlllsalisgsevalfslssedleeeeeeeskke....kivinllekpkkllatiliannliniaivllftslseelfgsletellrfllevvivtflillfGeilPkvyasrnslkfaklmaklisildkllsplslvlravtlliekklgkkksnl.svdelsqaleltdeedttke.ekkilkGivsfGntdtkqvmksrldifaldeee..sfkeviekiiekgysriPvy.ketidnikGvlyvkdllpylnkkdf...e.WqsllreayfvPenkklddllkdfqekkvhlaiv..vdeyGGt.......sGlvslediieeivGd.isdefddedlly 325
                 ++l++ s+l sg  ++l+ l++ +l+  +  +++++     ++i + ek + ll+++l+ n  +n     l+++++ ++ g     ++ f    ++ t++i++fGei+P+  +sr +l+  +++ +++++++ +l p++ +l  +   ++k lg++  ++ s  el + +++ +++d  ++ ++k + G ++f + ++ ++m++  d++ ++ee   +fk+ +++i ++g+sriP+y k+  d+i G+++vkdl+  + +++    + ++ + r++ ++ e+  +  +l +f++   h+aiv  vd+   t        G+++ledi+ee++G+ i de d    +y
  MMETSP1174-20130828|2904_1  35 LILIIFSGLFSGLTLGLLGLDKINLQIIKGGNDNRQselaSKIIPVREKGNLLLCSLLLGNVGVN----ALLSIIMADYAGG----IMGF----ILSTVFIVIFGEIIPQATCSRYALEIGSATIPIVKVIMFVLYPMTKPLAMI---LDKVLGDEIGSIhSTGELIEMIKIHEKHDAVDNmQNKAITGALKFKDLNVLDIMTPVEDVYMINEEDrlDFKK-LSEIFQTGFSRIPIYgKDGRDDIVGMIFVKDLIFIVPEDETpvkNfFKIMSRQPMLIEEDDAVGGVLIQFKSGNGHMAIVrgVDNSDETrdpvrvvRGILTLEDIVEELIGEeIVDETD----VY 361
                 799**********************9988766655511114566666777788888887765555....5666666666544....3445....5568899***************************************99754...56666666544426789999999999988776526789*************************9886225665.689************7799*************99887755411131344569***************************988887776633333336**************63777766....34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 2118.43
//
Query:       MMETSP1174-20130828|2909_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 1097.46
//
Query:       MMETSP1174-20130828|2910_1  [L=1107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.97
# Mc/sec: 1506.31
//
Query:       MMETSP1174-20130828|2915_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|2917_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1126.31
//
Query:       MMETSP1174-20130828|2920_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   12.8  15.8     0.0046   12.5  10.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.034    9.6  15.5      0.038    9.4  10.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        6.2    3.5  13.0        7.8    3.1   9.0    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  10.9   3.4e-06    0.0046     293     481 ..      38     177 ..      16     213 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-06
   TIGR02168 293 lkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqk 481
                 l++e++++++ +e +k++l+++e++++e+e++l+ + +k+  le++l++ +    + ++e++++++e+e+ ++ +  le+++ +l++ l++ ++e+  +  ++ +++++ +   ++                                              + e+e + ++ ++++++  + ++ +++
  MMETSP1174-20130828|2920_1  38 LTNELEECKRLLEDYKNKLSHSERTNAEIEHRLQLQGQKRMSLEANLSAKQ---RDNMAEFKAMSDEVEQWKQSFTRLERHNVNLRDTLNRTERELMGVLAKKYEIQEKAKIEARQ----------------------------------------------QLEEEVFLKRGRSVSKSAPRTREIRDN 177
                 555666666666666666666666666666666666666555555554444...45555555566666666666666666666666666666666555555555554444222211..............................................111111111111111111111111111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  10.8   2.8e-05     0.038     300     423 ..      38     156 ..      11     210 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2.8e-05
   TIGR02169 300 lkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeel 423
                 l+ e+e+++r +++++++l ++e+++a++e +++ + ++  +le ++ +++++    ++e+k+  +e e+ ++    ++ ++ +lr+ l+  +++l  +  +++e++  ++ ++e  ++leee+
  MMETSP1174-20130828|2920_1  38 LTNELEECKRLLEDYKNKLSHSERTNAEIEHRLQLQGQKRMSLEANLSAKQRDN---MAEFKAMSDEVEQWKQSFTRLERHNVNLRDTLNRTERELMGVLAKKYEIQ--EKAKIEARQQLEEEV 156
                 344455555555555555555555555555555555555555554444433322...34444444444444444444455555555555555555555555555555..222234444443332 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   9.0    0.0057       7.8     145     256 ..      42     154 ..      12     214 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0057
   TIGR01843 145 lesleaqikqleaeleglqaqlqalrqqleli.seelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlae 256
                 le+ ++ ++ ++++l+ +++  ++++++l+l  ++++    +L +k+  +++e  +  +e+++ +++  +le +  +l+  l+++e++l ++ +k +e  +++  ea+++l+e
  MMETSP1174-20130828|2920_1  42 LEECKRLLEDYKNKLSHSERTNAEIEHRLQLQgQKRMSLEANLSAKQRDNMAEFKAMSDEVEQWKQSFTRLERHNVNLRDTLNRTERELMGVLAKKYEIQEKAKIEARQQLEE 154
                 44444444444444444444444444444443122333334444444444444444444444444444444444444444444444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|2925_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 1742.26
//
Query:       MMETSP1174-20130828|2928_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|2930_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 277.63
//
Query:       MMETSP1174-20130828|2934_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1404.14
//
Query:       MMETSP1174-20130828|2937_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.2   0.0      0.029   12.3   0.0    1.4  1  TIGR02728 spore_gerQ: spore coat protein GerQ


Domain annotation for each model (and alignments):
>> TIGR02728  spore_gerQ: spore coat protein GerQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     7e-06     0.029      41      69 ..      92     120 ..      80     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-06
   TIGR02728  41 ieeagrdhivisdpksgrrylllmvyldy 69 
                  e+ grd +v++ ++s  ry++l+ + d 
  MMETSP1174-20130828|2937_1  92 PEHNGRDGVVVRFEQSADRYVVLLRQADD 120
                 5899******************9877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 768.84
//
Query:       MMETSP1174-20130828|2944_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1174-20130828|2949_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    8.3   8.1       0.42    8.4   5.6    1.0  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.6    0.0001      0.42      11      51 ..       6      47 ..       1      52 [] 0.56

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0001
   TIGR00986 11 vvqqderqavveeeedaedqe.dvdeedssdsDfeddeeetl 51
                + qq+++q  ve  +d+ed++  v++ d++d+D + d + tl
  MMETSP1174-20130828|2949_1  6 QQQQQQQQQAVEAGDDEEDKDmRVNNVDDDDADPDLDRQATL 47
                344455567777766666665257777777777665555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|2953_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 223.65
//
Query:       MMETSP1174-20130828|2950_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|2957_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 255.18
//
Query:       MMETSP1174-20130828|2946_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   10.6   1.1       0.11   10.0   0.7    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.7   2.6e-05      0.11     128     159 ..      57      88 ..      51      94 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.6e-05
   TIGR03532 128 navlGgraivGknvhiGaGavlaGvieppsak 159
                 ++++G+ +++  n+ +Ga avl+G+++pp+ k
  MMETSP1174-20130828|2946_1  57 KVTVGAVGQLAVNTAVGATAVLSGLVDPPTIK 88 
                 6789*************************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1636.66
//
Query:       MMETSP1174-20130828|2954_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-56  181.9   0.0    1.3e-08   32.3   0.0    7.3  7  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0099   12.6   0.0        2.2    4.9   0.0    3.5  5  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.3e-10   4.6e-07       1      35 []       5      39 ..       5      39 .. 0.97
   2 !   32.3   0.0   6.6e-12   1.3e-08       1      34 [.      40      73 ..      40      74 .. 0.96
   3 ?    2.9   0.0     0.015        31       9      28 ..      83     101 ..      78     103 .. 0.74
   4 !   30.8   0.0   1.9e-11     4e-08       1      35 []     110     144 ..     110     144 .. 0.96
   5 !   32.3   0.0   6.4e-12   1.3e-08       1      35 []     145     179 ..     145     179 .. 0.97
   6 !   26.6   0.0   4.2e-10   8.6e-07       1      35 []     180     214 ..     180     214 .. 0.97
   7 !   19.9   0.0     6e-08   0.00012       1      27 [.     215     241 ..     215     249 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.3e-10
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                vt+++ is++ kag+++ Al l+ eM+ +g++P++
  MMETSP1174-20130828|2954_1  5 VTFSAAISACEKAGKWKAALHLLAEMRHEGVEPNS 39
                79*******************************95 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 6.6e-12
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPd 34
                ++y++ is++ k+g++e+Alel+deM+ +g++P+
  MMETSP1174-20130828|2954_1 40 FSYSAAISACEKSGKWEKALELLDEMRLQGMEPN 73
                58*******************************9 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.015
   TIGR00756   9 glckagrveeAlelfdeMke 28 
                 ++++ g++ eAl+l+++M+ 
  MMETSP1174-20130828|2954_1  83 AYGNGGDW-EALQLLNDMQQ 101
                 66666666.58999999985 PP

  == domain 4    score: 30.8 bits;  conditional E-value: 1.9e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 ++y++ is++ k+g++e+Alel+deM+ +g++P++
  MMETSP1174-20130828|2954_1 110 ISYSAAISACEKSGKWEKALELLDEMRIDGVEPSV 144
                 59*******************************85 PP

  == domain 5    score: 32.3 bits;  conditional E-value: 6.4e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ is++ k +++e+Al+l+ eM++rg++Pd+
  MMETSP1174-20130828|2954_1 145 ISFNAAISACEKGNQWEKALQLLSEMQRRGMEPDV 179
                 58*******************************96 PP

  == domain 6    score: 26.6 bits;  conditional E-value: 4.2e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n++is+l k g++e  l+l+++M+e +i Pd+
  MMETSP1174-20130828|2954_1 180 ISFNAVISALEKGGQWERTLQLLNLMLEYDIQPDV 214
                 58*******************************96 PP

  == domain 7    score: 19.9 bits;  conditional E-value: 6e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                 +++++ is++ k+g++++Alel+d+M+
  MMETSP1174-20130828|2954_1 215 ISFSAAISACQKSGQWKKALELLDQMR 241
                 58999*********************8 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.21   4.4e+02     225     249 ..       3      28 ..       2      38 .. 0.85
   2 ?   -3.5   0.0      0.36   7.4e+02     223     249 ..      36      63 ..      26      69 .. 0.75
   3 ?    0.2   0.0     0.029        59     224     249 ..     107     133 ..      97     136 .. 0.84
   4 !    2.6   0.0    0.0053        11     220     249 ..     138     168 ..     133     179 .. 0.85
   5 !    4.9   0.0    0.0011       2.2     222     249 ..     210     238 ..     205     274 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.21
   TIGR02928 225 eviplvaalaaqeh.GdaRkAidlLr 249
                 +v+ + aa++a e+ G    A+ lL 
  MMETSP1174-20130828|2954_1   3 NVVTFSAAISACEKaGKWKAALHLLA 28 
                 68999999999887799999999985 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.36
   TIGR02928 223 ddeviplvaalaaqeh.GdaRkAidlLr 249
                 + +     aa++a e+ G   kA++lL 
  MMETSP1174-20130828|2954_1  36 EPNSFSYSAAISACEKsGKWEKALELLD 63 
                 5555667788888766699999999985 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.029
   TIGR02928 224 deviplvaalaaqeh.GdaRkAidlLr 249
                  +vi   aa++a e+ G   kA++lL 
  MMETSP1174-20130828|2954_1 107 PTVISYSAAISACEKsGKWEKALELLD 133
                 589*******998877*********96 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.0053
   TIGR02928 220 gvlddeviplvaalaaqehGda.RkAidlLr 249
                 + ++ +vi + aa++a e+G+   kA++lL 
  MMETSP1174-20130828|2954_1 138 DGVEPSVISFNAAISACEKGNQwEKALQLLS 168
                 558999**************96368999986 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.0011
   TIGR02928 222 lddeviplvaalaa.qehGdaRkAidlLr 249
                 ++ +vi + aa++a q++G   kA++lL 
  MMETSP1174-20130828|2954_1 210 IQPDVISFSAAISAcQKSGQWKKALELLD 238
                 6789********884666*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 802.93
//
Query:       MMETSP1174-20130828|2966_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 908.40
//
Query:       MMETSP1174-20130828|2970_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|2974_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 228.44
//
Query:       MMETSP1174-20130828|2977_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|2978_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-09   32.9   0.0    4.6e-09   32.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00056   17.2   0.0     0.0012   16.2   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.3e-12   4.6e-09       6     143 ..     281     417 ..     277     421 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.3e-12
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGea.edgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahd...aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatl 143
                 vaik l  +a + +   + F +ei+   rL+hP++v+ l    + e   l  v e+     + + ++    ++ ++  r  + +  +la  h+     ++hRD+kP n m++ +    + k+ DFGi+ L   +++  ++++
  MMETSP1174-20130828|2978_1 281 VAIKRLYANALTVN--ARLFEKEITTMRRLHHPKVVQFLGFAMSsETAGLCMVMELFGHGSIEDYIKRGNHVSWQTSIRWCADMAQSLAYIHNlkpDHIIHRDIKPGNFMLTDS---LKVKLGDFGIARLFDSADNKIKKQI 417
                 77777766654332..3349*******************9776515567999****99999******9999999999999999999999999854468*************965...6789*********998888776666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.8e-07    0.0012      73     141 ..     329     408 ..     292     416 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.8e-07
   TIGR03724  73 kivmeyiegkklkdlleekel.......ellkevGelvgklHkag...ivhgDlttsNiivk.ddklyliDfGLgkkske 141
                  +vme      ++d++++ ++       + + ++++ ++ +H+ +   i+h D+ + N++++ + k+ l DfG+++  ++
  MMETSP1174-20130828|2978_1 329 CMVMELFGHGSIEDYIKRGNHvswqtsiRWCADMAQSLAYIHNLKpdhIIHRDIKPGNFMLTdSLKVKLGDFGIARLFDS 408
                 567888888888888888777788888899************974444*************72568999*****987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.60
# Mc/sec: 1476.08
//
Query:       MMETSP1174-20130828|2980_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.1   0.0     0.0045   14.1   0.0    1.2  1  TIGR01478 STEVOR: variant surface antigen, stevor family
  ------ inclusion threshold ------
      0.031   11.4   0.9      0.032   11.4   0.7    1.1  1  TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-06    0.0045      59      74 ..      47      62 ..       8      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.2e-06
   TIGR01478 59 PhYhnDpeLkeiiDkl 74
                  Y++DpeLkeiiD l
  MMETSP1174-20130828|2980_1 47 GKYKDDPELKEIIDAL 62
                47************87 PP

>> TIGR00515  accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   1.6e-05     0.032     165     195 ..       2      32 ..       1      50 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
   TIGR00515 165 GGarmqeallslmqmaktsaalkklrekkll 195
                 GGa mqe +  lm   k  aa++k + +  l
  MMETSP1174-20130828|2980_1   2 GGAGMQEMMSKLMSNPKAMAAVQKAQSNPRL 32 
                 9*********************998876443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|2984_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 270.58
//
Query:       MMETSP1174-20130828|2992_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 662.88
//
Query:       MMETSP1174-20130828|2993_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|2994_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.62
# Mc/sec: 483.25
//
Query:       MMETSP1174-20130828|2999_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   14.0   0.0     0.0064   12.9   0.0    1.4  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.6e-06    0.0064      59     118 ..     383     442 ..     378     449 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-06
   TIGR03377  59 areCieenkilkkiakhcveetgGlFiklpeDdleyqkkfleaceeagieaeeldpeeal 118
                  re ++ nkil+ i k+ v +   lF +l eD+++y+k + + +++ ++ ++e ++++a+
  MMETSP1174-20130828|2999_1 383 SRETLQQNKILRVIKKNLVKKSLELFNELAEDEEKYKKFYEAFSKNLKLGIHEDSTNRAK 442
                 6999*********************************99988888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.78
# Mc/sec: 1208.21
//
Query:       MMETSP1174-20130828|3000_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 541.61
//
Query:       MMETSP1174-20130828|3003_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|3005_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 146.65
//
Query:       MMETSP1174-20130828|3006_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 297.82
//
Query:       MMETSP1174-20130828|3009_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|3012_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 587.12
//
Query:       MMETSP1174-20130828|3015_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 203.98
//
Query:       MMETSP1174-20130828|3021_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.63
# Mc/sec: 519.58
//
Query:       MMETSP1174-20130828|3024_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-10   38.1   0.0    2.5e-10   37.8   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.4e-10   37.5   0.0    4.8e-10   37.4   0.0    1.0  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.2e-08   32.4   0.0    1.5e-08   32.1   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.6e-08   29.1   0.0      9e-08   28.9   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      2e-05   21.4   0.0    2.5e-05   21.0   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      2e-05   21.4   0.0    2.5e-05   21.1   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00044   17.8   0.0    0.00045   17.8   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
     0.0076   13.1   0.0      0.013   12.4   0.0    1.2  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.8e-13   2.5e-10     216     295 ..      67     146 ..      54     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4.8e-13
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                 s+    L++ ++h +  E+++ + F   Ge+ ++ +++D  tG  kGy  ++++  eea  A+e++NG el G +i v  
  MMETSP1174-20130828|3024_1  67 SVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDW 146
                 66677799********************************************************************9976 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   9.3e-13   4.8e-10     263     342 ..      64     144 ..      25     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 9.3e-13
   TIGR01661 263 aasdgagycifvynlspdt.deavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                 +a++  g+ +f+  +  ++ ++ +l  f + G v+++ +  d +t   kGy++v    ++ea+ ai+++nG +l ++++ v
  MMETSP1174-20130828|3024_1  64 PAESVEGWILFIRGVHEEAqEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISV 144
                 345778*********9987367899*************************************************9999887 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.9e-11   1.5e-08       3      77 ..      73     147 ..      71     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.9e-11
   TIGR01628   3 lyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmws 77 
                 l++ +++e+  E  + ++F e g+v ++ v  D  t    gYa v +++ ++A  A++t n ++l g++i + w 
  MMETSP1174-20130828|3024_1  73 LFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWA 147
                 677788999999999999999999999999999999999999999999999999999999999999999998885 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.8e-10     9e-08     299     375 ..      73     149 ..      54     160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.8e-10
   TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                 l+i ++  + ++d + +   + G+++   +  d+ tG  KGya +ey+    +  Ai++ nG +l ++++ v  A +
  MMETSP1174-20130828|3024_1  73 LFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFL 149
                 8999999999*****9999999***********************************************99998876 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   4.9e-08   2.5e-05     115     179 ..      80     145 ..      71     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.9e-08
   TIGR01645 115 felkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                  e +ed +   f   G ++ i +  d  t+  kg+a+ve e  e a  a e  ng+ l G+ + v+
  MMETSP1174-20130828|3024_1  80 EEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEyESFEEATSAIETFNGQELLGQTISVD 145
                 58899999999****************************9999*************9999999886 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.9e-08   2.5e-05     235     313 ..      72     156 ..      53     162 .] 0.71

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.9e-08
   TIGR01648 235 ilyvrnlmletteeiieksf...sefkpGav...ervkkirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyv 313
                 il++r +  e+ e+ i  +f   +e++   v    r   ++ ya+v +e+ e+a  a++ +nG+el G++i v  a   d  ++ 
  MMETSP1174-20130828|3024_1  72 ILFIRGVHEEAQEDDILDKFlecGEVRNIHVnldRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFLSDSGKHP 156
                 8888888888888655555512233333333111466679999999999999999999999999999999999888777766555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.7e-07   0.00045     115     184 ..      78     147 ..      26     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.7e-07
   TIGR01659 115 lpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsya 184
                 + ++ ++ ++   f   g +    +  d +tg+  gya+v++ s  ++  ai+++ng  +  + + v +a
  MMETSP1174-20130828|3024_1  78 VHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWA 147
                 556667777778888999999999999******************************9988888888776 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.4e-05     0.013       5      73 ..      73     145 ..      68     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
   TIGR01649   5 vHvRnlpeevveadlvelliefGkvsyvlvlkg......krqAlvEfedeesAkalVnfatsvpiqirGrtvfvq 73 
                 + +R+++ee  e d+++   e G+v ++ v         k  AlvE+e  e A+++++  t +  ++ G+t+ v+
  MMETSP1174-20130828|3024_1  73 LFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDrrtgfvKGYALVEYESFEEATSAIE--TFNGQELLGQTISVD 145
                 67999********************999875441222225579999999999999876..445556667776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 485.96
//
Query:       MMETSP1174-20130828|3027_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   61.9   2.5      2e-17   61.4   0.0    1.9  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.4e-16   57.2   0.1    9.9e-16   56.0   0.0    1.5  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.9e-16   55.8   0.0    1.4e-15   55.2   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.7e-14   52.0   0.0    2.8e-14   51.3   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.9e-13   47.0   0.0    4.2e-13   46.4   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      3e-11   40.6   0.0    5.4e-11   39.8   0.0    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      6e-09   33.0   0.0      6e-09   33.0   0.0    1.6  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0027   14.6   0.0     0.0049   13.7   0.0    1.3  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0     4e-20     2e-17     284     360 ..      89     166 ..      80     175 .. 0.79
   2 ?   -0.6   0.9      0.23   1.2e+02     443     486 ..     403     447 ..     326     489 .. 0.41

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 4e-20
   TIGR01628 284 qgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyval 360
                  g Nl++  + + +++ +L +lF  fG++ Sa++m++ e+++S+gFGFV+f +   A +A++ ++g  +++k L v  
  MMETSP1174-20130828|3027_1  89 DGCNLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVEnETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQH 166
                 577888888888888888888888888888888888778888888888888888888888888888888888887754 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.23
   TIGR01628 443 pnalaqlaqqrlqaqgrrnlnnrnrnv.lgnmnkkqqnaaskanq 486
                 p++l+  +++++  + +r+l ++++ + l  +n+++q+++++++q
  MMETSP1174-20130828|3027_1 403 PTSLTDASTEEKIHELQRQLAQQTELLtLLLNNQQRQQRVQQHDQ 447
                 222222222221111112222222222211113333333333333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.9e-18   9.9e-16      89     154 ..      90     155 ..      84     164 .. 0.96
   2 ?   -3.1   0.0       1.9   9.8e+02     201     252 ..     407     458 ..     398     469 .. 0.60

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.9e-18
   TIGR01661  89 ganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGt 154
                 g+nl++  +P  +t  +l +lf  fG++i++ri+++n t+ s+G Gf+ fd+r  a  aika+nG 
  MMETSP1174-20130828|3027_1  90 GCNLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVENETGRSRGFGFVSFDNRRSAVAAIKAMNGY 155
                 89**************************************************************96 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.9
   TIGR01661 201 taaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadga 252
                 t a++    +++++   ++++ l+ l +++q++   qq+   + + +a d +
  MMETSP1174-20130828|3027_1 407 TDASTEEKIHELQRQLAQQTELLTLLLNNQQRQQRVQQHDQLQRGNIACDPV 458
                 4444444555566666666666666655555555556666666666666655 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   2.7e-18   1.4e-15     220     297 ..      91     168 ..      79     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 2.7e-18
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                   L++  +   +t+ +L ++F +FG++ + +++ ++etGrs+G+GF+ F +   a +A++++NG ++  + +kv + +
  MMETSP1174-20130828|3027_1  91 CNLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVENETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQHKK 168
                 568888888999*******************************************************9999***9855 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   5.4e-17   2.8e-14     105     184 ..      88     167 ..      79     175 .. 0.93

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 5.4e-17
   TIGR01659 105 asgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsya 184
                  +g nl + ++p+ +t+ +ly lf + g + + rim +  tg s g++fv f     +  aik++ng  +  krlkv + 
  MMETSP1174-20130828|3027_1  88 PDGCNLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVENETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQHK 167
                 5789*************************************************************************875 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   8.3e-16   4.2e-13     298     372 ..      92     166 ..      68     173 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 8.3e-16
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                  l+i  +P++l+++ + +L   FG++ +  ++ + +tG s+G++F+ +++   +  Ai+a+nG ++g k+L+v++
  MMETSP1174-20130828|3027_1  92 NLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVENETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQH 166
                 59***********************************************************************96 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.1e-13   5.4e-11      42     128 ..      73     161 ..      70     164 .. 0.93

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.1e-13
   TIGR01648  42 kyGGPPPg.yegaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGr 128
                  y GPP +  ++ q   Gc++f+  iP  l + +l  lf   G++   r+m++   G+ rG+ fv f n++ a  a+k +n y+i   r
  MMETSP1174-20130828|3027_1  73 HYPGPPIQtTKTCQGPDGCNLFIFHIPNHLTNVDLYNLFVAFGNVISARIMVEnETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKR 161
                 59999998678899999***********************************9788****************************96655 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.2e-11     6e-09     208     287 ..      98     177 ..      91     187 .. 0.88
   2 ?   -5.8   2.6       6.6   3.4e+03      78      99 ..     432     450 ..     404     455 .. 0.53

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.2e-11
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdallqP 287
                 + + l++ dl  +f afG++++ ++  +  +++ +GfGf+ f+n++s   ai +mn + +G + l+v +    P++ + P
  MMETSP1174-20130828|3027_1  98 IPNHLTNVDLYNLFVAFGNVISARIMVENETGRSRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQHKKERPEPGALP 177
                 55679999**********************************************************98877776665555 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 6.6
   TIGR01645  78 llkqtlahqkqqle.nqqrqvqr 99 
                 l    l  q++q+  +q+ q qr
  MMETSP1174-20130828|3027_1 432 L----LNNQQRQQRvQQHDQLQR 450
                 2....333444444044444443 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.5e-06    0.0049     252     372 ..      47     168 ..      17     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.5e-06
   TIGR01649 252 galaplalgdraglaaglapsreslalasaalapaisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrvavSk 372
                  +  ++a+g +++ a+  a     +++ s+  +p+i++t+   ++ g+ l+++ + ++  +   l+nlf  +G+v   +i+ +      ++ ++v + + + a  a++ +++ ++  k+l+v   k
  MMETSP1174-20130828|3027_1  47 KPPLDAAVGFGTP-AN--AVLPVGPDYISHYPGPPIQTTKTCQGPDGCNLFIFHIPNHLTN-VDLYNLFVAFGNVISARIMVENetgrsRGFGFVSFDNRRSAVAAIKAMNGYQIGRKRLKVQHKK 168
                 3444444444443.22..3344578999999999********************9876555.569***************9764111114568999999999999999999999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.69
# Mc/sec: 948.79
//
Query:       MMETSP1174-20130828|3026_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1201.65
//
Query:       MMETSP1174-20130828|3029_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1102.29
//
Query:       MMETSP1174-20130828|3033_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-83  277.5   0.0    1.1e-82  276.4   0.0    1.5  1  TIGR01499 folC: bifunctional protein FolC
      2e-09   34.7   0.1      3e-06   24.2   0.0    2.8  3  TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
    8.3e-07   25.9   0.2     0.0041   13.7   0.0    2.2  2  TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
    3.3e-05   19.9   0.6      0.031   10.1   0.0    2.9  3  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    0.00019   18.3   1.4    0.00043   17.2   0.0    2.1  3  TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
    0.00059   16.8   0.0       0.14    9.0   0.0    2.5  3  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
     0.0015   15.5   0.0      0.023   11.6   0.0    2.4  3  TIGR01082 murC: UDP-N-acetylmuramate--alanine ligase
  ------ inclusion threshold ------
      0.018   11.9   0.0      0.032   11.0   0.0    1.3  1  TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   0.0   2.2e-85   1.1e-82       1     398 [.      50     444 ..      50     446 .. 0.85

  Alignments for each domain:
  == domain 1    score: 276.4 bits;  conditional E-value: 2.2e-85
   TIGR01499   1 lermkkllealgnpekklrvihvaGTnGKGStaaflesiLeaaglkvglftSPHlvsfrERirvngepiseeelaqlveeveealkklspskptfFelltllaflyFaeeqvdvavlEvGlGGrlDaTnviepevsvitsiglDHteiLGdtleeIAkeKagIikegvpivtaeqepealevlkkkAeekgaellvvdkdfeikekeeklsfegenlkleklklsllgehqvenaalala.alevlakessekleeeekreglestkwpGRleileed...npnillDgAHnpesaealvewlkkeankrkivllfgllkdkdaaallkalkelvkkevlvtevespraesaadlekaaesqg.e............eelvsswrealeea...........ke..kaeeeekvlVtGSlylvgevlk 398
                 l++m+++    g p k+  v+h+aGTnGKGS+a  ++  L+aag+++glf SPH+ sfrER++v+ ++i+eee+ + + ++ +  ++ +   +tfFel+t laf  Fa ++++v+vlE+GlGGrlDaTn+++p vs+its+glDHt+iLGdt+e+IA eKagIik+gvp+v+++  +   +vl++ Ae++++++  +d+ +e ++k    +f+++n  +               aal l+ + ++l++ + ++++++++ +gl+s + p R+++++     + +i+lD +Hn  ++++l  +lk ++++ + ++++g+  dkd+a++lk + ++ ++ v++++  +praes + l +a+e    +             +           +           ++  ++  ee ++V+GS++l ge ++
  MMETSP1174-20130828|3033_1  50 LTNMERIHTLSGSPMKERCVVHIAGTNGKGSVAWKIATALQAAGYRTGLFVSPHIASFRERVQVDFNYITEEEVLDQLPQLMALCEEND-VPATFFELVTGLAFNHFARKEAEVVVLETGLGGRLDATNIVTPVVSIITSVGLDHTRILGDTIEKIAGEKAGIIKSGVPVVVGP--DAPHHVLRDYAERRDSPFHALDN-LEANSK----DFDDQNSMIA-------------RAALDLMnEENLLGSIKDKHISQAAIDSGLAS-RPPCRFQLFSPPdggAGTIVLDCGHNAPAMQSLLWKLKRHFPTARFRFVVGFSRDKDMAGCLKMIFQSSTDMVHLVQAAHPRAESPEVLLAAMEGHVlDdgrsvdamiavaPS-----------VadgvtaalaahQAqvRDGVEEVMVVCGSVFLMGEARS 444
                 57899999999***88889********************************************************************87.89*********************************************************************************9..66679*************99995.333322....4555553333.............33333330333445555567888889899985.89*******98789999**********************************************998888755**************999988665554355566666444434...........14444444555433478999**************9876 PP

>> TIGR01085  murE: UDP-N-acetylmuramyl-tripeptide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.8e-09     3e-06      68     125 ..      50     107 ..      26     153 .. 0.71
   2 ?    0.5   0.0     0.092        47     270     318 ..     157     206 ..     101     253 .. 0.68
   3 !    6.8   0.0    0.0011      0.59     332     409 ..     310     387 ..     273     420 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.8e-09
   TIGR01085  68 kalsslaaafydepskklkviGvtGTnGKttttsliaqlleklgkktgligTvglelg 125
                  + ++  +++ ++p k+  v+ ++GTnGK ++++ ia +l+++g +tgl     +  +
  MMETSP1174-20130828|3033_1  50 LTNMERIHTLSGSPMKERCVVHIAGTNGKGSVAWKIATALQAAGYRTGLFVSPHIASF 107
                 445566778889************************************9766555555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.092
   TIGR01085 270 etpageakletpliGeFnvaNvlaalavllalggldlealv.ealeklkg 318
                  ++a+   let l G+ ++ N++  ++++ +  gld  +++ +++ek+ g
  MMETSP1174-20130828|3033_1 157 RKEAEVVVLETGLGGRLDATNIVTPVVSIITSVGLDHTRILgDTIEKIAG 206
                 33445678899999999999999999998888889888776355666665 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0011
   TIGR01085 332 fevivDYAHtpdalekvletlr.klkkgrlivvfGagGdrDrtKRplmgaiAekladkv.iltddnPRsedpeqIladil 409
                  +++ D  H   a++++l +l+ ++ + r   v+G   d+D     +   i +   d v ++    PR e+pe  la + 
  MMETSP1174-20130828|3033_1 310 GTIVLDCGHNAPAMQSLLWKLKrHFPTARFRFVVGFSRDKDMAGCLK--MIFQSSTDMVhLVQAAHPRAESPEVLLAAME 387
                 57999****************9677888*******987777665544..5777777776244567899999999888775 PP

>> TIGR04012  poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0001     0.053      31      58 ..      69      96 ..      55      98 .. 0.93
   2 !   13.7   0.0   8.1e-06    0.0041     123     193 ..     177     247 ..     154     263 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
   TIGR04012 31 rihvNGiRGKssvtRLiaailreggykv 58
                 +h+ G+ GK sv+  ia+ l+++gy++
  MMETSP1174-20130828|3033_1 69 VVHIAGTNGKGSVAWKIATALQAAGYRT 96
                69************************97 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 8.1e-06
   TIGR04012 123 klvkatigvivNvreDHldvmGptldevaealsatiPkkgklvtaedeyldffkeaakdrntklivadaee 193
                 ++v   + +i+ v  DH  ++G+t +++a   +  i     +v+  d   +++++ a++r++  ++ d+ e
  MMETSP1174-20130828|3033_1 177 NIVTPVVSIITSVGLDHTRILGDTIEKIAGEKAGIIKSGVPVVVGPDAPHHVLRDYAERRDSPFHALDNLE 247
                 68888899*********************9988888888889999999***************99997644 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     6e-05     0.031     481     513 ..      69     101 ..      61     112 .. 0.91
   2 ?    0.6   0.2     0.045        23     540     597 ..     157     212 ..     151     223 .. 0.80
   3 !    5.4   0.0    0.0015      0.77     717     769 ..     293     349 ..     278     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6e-05
   TIGR02068 481 ivavtGtnGkttvtrlvahilkltGkvvGlttt 513
                 +v ++GtnGk  v+  +a  l+ +G+++Gl  +
  MMETSP1174-20130828|3033_1  69 VVHIAGTNGKGSVAWKIATALQAAGYRTGLFVS 101
                 899**************************9665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.045
   TIGR02068 540 dktvdaavletarGgiLreGLafdradvgvvtniaaDhLGlgdintiedlakvkrvvv 597
                  k+ ++ vlet  Gg L       +  v+++t ++ Dh  + + +tie++a  k+ ++
  MMETSP1174-20130828|3033_1 157 RKEAEVVVLETGLGGRLDAT-NIVTPVVSIITSVGLDHTRILG-DTIEKIAGEKAGII 212
                 6788999********99764.667889***********88765.78888887776665 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0015
   TIGR02068 717 aqaPgrfnlf...nlggatvlvDyahnpealkavv.eaveklkarrrigvvggpgDr 769
                 ++ P rf+lf   + g  t++ D +hn+ a++ ++ +  +++++ r   vvg + D+
  MMETSP1174-20130828|3033_1 293 SRPPCRFQLFsppDGGAGTIVLDCGHNAPAMQSLLwKLKRHFPTARFRFVVGFSRDK 349
                 56799*****443456678999**********9872556789999999999987665 PP

>> TIGR01143  murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   8.7e+02      76      97 ..      69      90 ..      63      94 .. 0.77
   2 !   17.2   0.0   8.3e-07   0.00043     122     236 ..     156     265 ..     149     292 .. 0.70
   3 ?   -1.0   0.1      0.27   1.4e+02      17      54 ..     394     431 ..     391     444 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.7
   TIGR01143 76 vigiTGSsGKTttKemlaaiLs 97
                v+ i+G +GK ++   +a+ L+
  MMETSP1174-20130828|3033_1 69 VVHIAGTNGKGSVAWKIATALQ 90
                7889******999777766666 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.3e-07
   TIGR01143 122 leeeedyavlEmGaskpGeiaelaeivkPdiavitnigeaHleefg.slegiaeaKseilqalkengiavinaddaalaklakelkekavlsfgledadveaedvelkelg.asftl 236
                 +++e +++vlE G   +  + + ++iv+P + +it +g  H   +g ++e+ia +K+ i++     g+ v+   da   +l++ ++++   +  l++ + +++d++ ++   a+  l
  MMETSP1174-20130828|3033_1 156 ARKEAEVVVLETGLGGR--L-DATNIVTPVVSIITSVGLDHTRILGdTIEKIAGEKAGIIKS----GVPVVVGPDAPHHVLRDYAERRDSPFHALDNLEANSKDFDDQNSMiARAAL 265
                 56889999999998644..4.4579*******************65279***********98....444444434334555555554445555555555556666655555555555 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.27
   TIGR01143  17 GerfdghdFveealaaGavavlvdreveasaelalllv 54 
                 G+++d+   v+  +a G++a+l++++ + +++++ ++v
  MMETSP1174-20130828|3033_1 394 GRSVDAMIAVAPSVADGVTAALAAHQAQVRDGVEEVMV 431
                 889999999999*************9877777666555 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00027      0.14     103     133 ..      66      96 ..      40      99 .. 0.88
   2 !    4.8   0.0    0.0052       2.7     146     281 ..     154     286 ..     135     300 .. 0.80
   3 ?   -2.0   0.0      0.59     3e+02     390     414 ..     351     383 ..     310     385 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00027
   TIGR01087 103 pakvvaitGtnGKsTttslltallkalglka 133
                 ++ vv i GtnGK +++  ++  l+a+g ++
  MMETSP1174-20130828|3033_1  66 ERCVVHIAGTNGKGSVAWKIATALQAAGYRT 96 
                 7789**********************99876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0052
   TIGR01087 146 vldqeeaellvlElS.SFqLetleslrpeialllniseDHldwhad.ledYvaaKlkilarqteedvlvlnaddkrlaalakkskaqvvlfsaekelerelvvrddkevlkaksetlllvaeikllgahnaenilaal 281
                 ++ ++eae++vlE+     L+ ++ ++p +++++++  DH    +d +e+   +K+ i++       +v+  d ++ ++l + ++++   f a  +le++ +  dd++ + a++ +l l++e +llg+ + + i +a+
  MMETSP1174-20130828|3033_1 154 HFARKEAEVVVLETGlGGRLDATNIVTPVVSIITSVGLDHTRILGDtIEKIAGEKAGIIKSG---VPVVVGPDAPH-HVLRDYAERRDSPFHALDNLEANSKDFDDQNSMIARA-ALDLMNEENLLGSIKDKHISQAA 286
                 44448999999999745789*********************9886527888899*****999...55777777555.6688888888899999998888887777766665544.78899999999988888877765 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.59
   TIGR01087 390 v........alvesleeavqaarevaksgdvvL 414
                 +        +  +++ ++vqaa  +a+s++v L
  MMETSP1174-20130828|3033_1 351 MagclkmifQSSTDMVHLVQAAHPRAESPEVLL 383
                 0444433324789999***********999876 PP

>> TIGR01082  murC: UDP-N-acetylmuramate--alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   4.5e-05     0.023      94     146 ..      61     113 ..      49     123 .. 0.85
   2 ?    0.2   0.0      0.13        66     167     190 ..     180     204 ..     157     223 .. 0.80
   3 ?   -1.6   0.0      0.45   2.3e+02     317     358 ..     310     346 ..     268     376 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.5e-05
   TIGR01082  94 aellkkkesiavaGthGKttttaliavvlkeagldptvvvGgevkeagtnarl 146
                 ++ +k+++ + +aGt GK +++  ia +l++ag  + ++v  ++ ++ + +++
  MMETSP1174-20130828|3033_1  61 GSPMKERCVVHIAGTNGKGSVAWKIATALQAAGYRTGLFVSPHIASFRERVQV 113
                 4679**********************************999999988877665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.13
   TIGR01082 167 qpevaivtniekdHld.yyssleel 190
                 +p v+i+t++  dH    ++++e++
  MMETSP1174-20130828|3033_1 180 TPVVSIITSVGLDHTRiLGDTIEKI 204
                 6777888888888877666666655 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.45
   TIGR01082 317 vlliDDYaHhPteikatlkaarqvveeknerivvvfqpHrYs 358
                  +++ D +H++  +++ l  +++ +++ + r vv f     s
  MMETSP1174-20130828|3033_1 310 GTIVLDCGHNAPAMQSLLWKLKRHFPTARFRFVVGF-----S 346
                 4567789****************9998777877765.....4 PP

>> TIGR01081  mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.3e-05     0.032      94     137 ..      59     102 ..      44     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.3e-05
   TIGR01081  94 lsdfllrdrwvlavagthgktttasmlawvleqaglkpgfligg 137
                 ls   +++r v+ +agt gk + a  +a  l+ ag+++g+++  
  MMETSP1174-20130828|3033_1  59 LSGSPMKERCVVHIAGTNGKGSVAWKIATALQAAGYRTGLFVSP 102
                 55666899*******************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1580.65
//
Query:       MMETSP1174-20130828|3040_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 228.44
//
Query:       MMETSP1174-20130828|3035_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-54  178.9   0.5      1e-53  178.6   0.3    1.1  1  TIGR03628 arch_S11P: archaeal ribosomal protein S11P
    1.5e-21   74.8   0.6    4.5e-21   73.3   0.4    1.7  1  TIGR03632 bact_S11: 30S ribosomal protein S11


Domain annotation for each model (and alignments):
>> TIGR03628  arch_S11P: archaeal ribosomal protein S11P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.3     5e-57     1e-53       2     117 .]      26     141 ..      25     141 .. 0.99

  Alignments for each domain:
  == domain 1    score: 178.6 bits;  conditional E-value: 5e-57
   TIGR03628   2 wgiahiyssfnntiititdltGaetiakvsGGmvvkadrdessPyaamqaakkvaekakekgieglhikvraPGgsksksPGPGaqaairalaraGlkigriedvtPiPhdgtrrk 117
                 +g+ahi++sfn+t++++tdl+G eti +v+GGm vkadrde+sPyaam aa+ va+k k+ gi++lhik+ra Gg+k+k+PGPGaq+a+ralaraGlkigriedvtPiP d trrk
  MMETSP1174-20130828|3035_1  26 FGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKDIGITALHIKMRATGGNKTKTPGPGAQSALRALARAGLKIGRIEDVTPIPSDCTRRK 141
                 69***************************************************************************************************************996 PP

>> TIGR03632  bact_S11: 30S ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.4   2.2e-24   4.5e-21       9     115 ..      26     141 ..      18     143 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 2.2e-24
   TIGR03632   9 egvvhikatfnntivtvtdekGnvlswasaGavgfkGskks.tpyaaqlaaekaakkakelglkevevlvkG........pgagresairalqaaglevtsikdvtpiphnGcrpr 115
                  gv+hi a+fn+t+v vtd +G    ++ +G +  k  + + +pyaa laa+++a k k++g+  ++++++         pg+g +sa+ral+ agl++ +i+dvtpip + +r +
  MMETSP1174-20130828|3035_1  26 FGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDEaSPYAAMLAAQDVAAKCKDIGITALHIKMRAtggnktktPGPGAQSALRALARAGLKIGRIEDVTPIPSDCTRRK 141
                 59***********************************997527*************************986411222222678899***********************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 595.95
//
Query:       MMETSP1174-20130828|3042_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-229  761.3   0.0   3.2e-229  761.0   0.0    1.0  1  TIGR00604 rad3: DNA repair helicase (rad3)
    4.1e-15   52.9   0.7    3.4e-10   36.6   0.0    3.1  3  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
    0.00095   15.6   0.6      0.012   12.0   0.0    2.7  3  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
      0.002   15.0   0.0     0.0063   13.4   0.0    1.7  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0055   13.7   0.2        2.2    5.1   0.0    3.4  4  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
  ------ inclusion threshold ------
      0.011   11.2   0.0      0.018   10.5   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR00604  rad3: DNA repair helicase (rad3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  761.0   0.0  4.7e-232  3.2e-229       3     700 ..      74     779 ..      72     788 .. 0.96

  Alignments for each domain:
  == domain 1    score: 761.0 bits;  conditional E-value: 4.7e-232
   TIGR00604   3 lvyfpyekiypeqrkymkdlkesldekdeaileepsgtgktiSlLskilayqeekpevkkiiYasrthsqleqlveelrklkearsk...eekveeskvkllelasrknlclnpkvsklrkekavnekciklkvskekesrrekt.skeaCefyenleelrevedlllseimdiedlvelgkklelCPYfasrkalekanvvvlpYqyLldpkirealsleLkk.sivifDEAHNldnviisalsselskrslkraskeikeleekieerkeadakkkldelkklvenLkqeelkteekiflkeeelekevlseavpgnirkaeiflhkLsrllevlklakkv....eelvselqkalleklkekteiar.elrfcserleellreleitekedvsaasllfklktllltlenkvleiielye..kktaenlilkfllLdpSialkpvlerarsvilasGTlsPldaflkiLslnavlekslehvlkrenlltlivtrgsdqvalestfekrkdpslvrnlaellvelikiiPdGivvFfpSYsyleevvsvwkengileelekkkkvfvEtkdaeetsdilerYkkavsegrGavLlaVvgGkvSEGidFsddlgraVilvGiPyPeltekrklkarleflkdkkeeresefleldamravnQaiGRviRhkdDygsivLlDkRyarsskrkkLpkWiqetisssdlnl 700
                  vyfpy+k+ypeq+kym ++k++ld+k++ +le+p+gtgkt  +Ls++++yq ++pe+ k+iY++rt++++ + + el+++ +       + + ++s  ++l l+sr+n c+++ v++ ++ +av+ +c+++++s+++++ ++++ s+e+C fye+ ++       ++++i++++dl+ lg+++++CPYf++r+++++a+v v+ Yqy+ldpk++  +s+eL++ s+vifDEAHN+dnv+i+als  l++rs+  a+++++++++k+ e+k  da +++de+++lv +L++    + ++ +l++++l+ +vlseavpgnir+ae+f+++L+++l  l++++      +++ +e++ a+ ++l   t+ +  +l+f+ +rl++llr+le+t  +++ +++++ +l tl++t++++++ +ie+       +++++l++ +Ld+Sia+kpv+er++svi++sGTlsPld ++++L++++v + sl++++ r+++++l++t+gsdq  ++++fe r++p +vrn+++ll++l++ iPdGivvFf+SY y+e++v  w   +++e+l +kk+vf+Etkd  et+++le+Yk+a++ grGav l+V++Gkv EGidF++++gr+V+l+G+Py ++t + +l+arle+l++++++re++fl++da r+++Q++GRv+R+k+Dyg++v++D+Ry+r +kr+kLp Wiq+ ++ s+l l
  MMETSP1174-20130828|3042_1  74 DVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAhvgQAGAASS-LLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQASPgSVETCDFYEEYDKA-GSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESeSVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDGAGGQ-TDTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMIStaenDTVETETPLAFVHRLCGDTHHEIkPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLVATYSKGFAIVIEPNGsiIPGVYEPTLQLACLDASIAIKPVFERFSSVIITSGTLSPLDLYPRLLNFQPVIRVSLDMSVFRTPICPLVITQGSDQAQISTRFEVRDEPGVVRNYGALLLDLASTIPDGIVVFFTSYMYMEKIVFEWDRLQVFERLLEKKLVFIETKDVVETTMALENYKRACNCGRGAVFLSVARGKVAEGIDFDQHYGRCVMLIGVPY-QYTLSHILRARLEYLRTTFQIREADFLTFDALRQAAQCVGRVMRSKKDYGVMVFADSRYNRYDKRSKLPPWIQQFLKASHLSL 779
                 58******************************************************************************99865541114455555.9999************************************88888889**************.***************************************************************9*****************************************************************998888.7889999*******************************9999875422226677889999*****999999999**************************************************9877899******************************************************************************************************************************************************************************************************.******************************************************************************99987 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00027      0.18     248     301 ..      84     140 ..      71     162 .. 0.77
   2 !    5.2   0.0    0.0015         1     410     472 ..     263     327 ..     255     359 .. 0.79
   3 !   36.6   0.0     5e-13   3.4e-10     627     860 ..     515     759 ..     450     765 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00027
   TIGR01407 248 eeQeklaelvedelteeekslIeAatGtGKtlgYL.Lpalyl.ak.eekpvviStat 301
                 +eQ k + +++++l  + + l+e +tGtGKt   L L ++y+ a+ e  +++  t t
  MMETSP1174-20130828|3042_1  84 PEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLsLVVSYQlAHpEMGKLIYCTRT 140
                 79*****************************98874444443245444455656666 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0015
   TIGR01407 410 akkkaekaellitNHAyLitelvdk..pelllesklliiDEahklediaenalqeeldiaslkkq 472
                 a++ +++a++l+ N  y+ + +v       l ++ ++i DEah++ ++  +al+  ld  s+   
  MMETSP1174-20130828|3042_1 263 ARHVINHAKVLVYNYQYMLDPKVAGmvSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAA 327
                 566678999********9987765311334899999*************9999999988887654 PP

  == domain 3    score: 36.6 bits;  conditional E-value: 5e-13
   TIGR01407 627 aerllpkkksvilvsaTLklskskeslkdllglkdvkfktieptplnsaenarvlv.ptdvpaiknv....sleeyaqevaskivelaalesskilVLFTskemlkaVa...d..klkelseeeglevlaQgin....GsrakilkrFekgekaiLlGas..sFwEGvDlpgnelkilviarLPFanPkepLvkkklqkleeEgknpFkdyalPkAilrlrQalGRliRreedrgsilvlDkRlvtkrYg 860
                  + +++++ svi++s+TL+     + ++ ll+++ v  + ++ + ++      v++  +d ++i        +   +++  + +  la+     i+V FTs++ ++ +    d  ++ e+++e++l+ +  +         +  +++ + g  a+ l ++     EG+D++++  +++++   P++   + ++++ l++l   ++   +d+   +A  +  Q +GR++R+++d+g+++  D R   +rY 
  MMETSP1174-20130828|3042_1 515 IKPVFERFSSVIITSGTLSPL---DLYPRLLNFQPVIRVSLDMSVFRTPICPLVITqGSDQAQISTRfevrDEPGVVRNYGALLLDLASTIPDGIVVFFTSYMYMEKIVfewDrlQVFERLLEKKLVFIETKDVvettMALENYKRACNCGRGAVFLSVArgKVAEGIDFDQHYGRCVMLIGVPYQYTLSHILRARLEYLRTTFQIREADFLTFDALRQAAQCVGRVMRSKKDYGVMVFADSRY--NRYD 759
                 677899999999999999866...8999999999999888886666665554444423677777653111133346677777888888777777*********99876423333356688888999888665431111344566788888999999987522689**********************9999**********99*9999*********************************995..4555 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.7e-05     0.012       1      81 [.      85     166 ..      85     220 .. 0.93
   2 ?   -1.8   0.1      0.25   1.7e+02     248     305 ..     297     356 ..     290     368 .. 0.66
   3 ?    0.2   0.0     0.062        42     510     578 ..     603     681 ..     568     687 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
   TIGR03117   1 eqarfylnledalelkrialveaatGvGktlamllaaeallkerpd.akvaiavPtlalldqlleeyerlqaealaepvsaa 81 
                 eq ++ l+++ al+ k  +l+e  tG Gkt  +l  + ++   +p+ +k++    t+  + + + e++r+  + la+  +a+
  MMETSP1174-20130828|3042_1  85 EQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEmGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAG 166
                 789999****************************9999999999999***********************999999977765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.25
   TIGR03117 248 dlLvvDeahlledalasvlssalslrrlhkaveklkakegkg..issakvaavsdviqrl 305
                  +++ Deah +++    +ls al  r +  a + l a   k   + ++  + ++d ++rl
  MMETSP1174-20130828|3042_1 297 SVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVreVKTRDASRLQDEYRRL 356
                 6789999*9999999999999987775554444444333322226666666666655555 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.062
   TIGR03117 510 qGGvlvLttafrdiaaig......qLvelqlsae.vvvqseda.rlasaedqflalaaaGkkpvllav..ggaWtGlDl 578
                   G++v  t++  +++i       q+ e  l+++ v ++++d+ + + a ++++++ + G+ +v+l+v  g    G+D+
  MMETSP1174-20130828|3042_1 603 PDGIVVFFTSYMYMEKIVfewdrlQVFERLLEKKlVFIETKDVvETTMALENYKRACNCGRGAVFLSVarGKVAEGIDF 681
                 4688888888888877744444336677777888566777775245567799************986611455566666 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.3e-06    0.0063      19      49 ..      95     125 ..      81     140 .. 0.79
   2 ?   -2.3   0.0      0.54   3.7e+02     129     146 ..     291     308 ..     272     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.3e-06
   TIGR04095  19 aWfknngrGilkmatGtGktltaLalvskla 49 
                 + ++++g+G+l+m tGtGkt   L+lv+  +
  MMETSP1174-20130828|3042_1  95 HALDAKGHGLLEMPTGTGKTACVLSLVVSYQ 125
                 557899****************999987654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.54
   TIGR04095 129 rllkkkllliaDeahnlG 146
                 r l+++ ++i Deahn+ 
  MMETSP1174-20130828|3042_1 291 RELESESVVIFDEAHNID 308
                 56788999********85 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0087         6       4      35 ..     105     137 ..     103     205 .. 0.83
   2 !    5.1   0.0    0.0032       2.2     125     150 ..     296     321 ..     284     329 .. 0.89
   3 ?   -1.4   0.0       0.3   2.1e+02     161     211 ..     598     650 ..     588     668 .. 0.54
   4 ?   -1.3   0.0      0.29     2e+02     310     335 ..     732     753 ..     721     765 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0087
   TIGR01587   4 ieAPtGyGKteaallwalk.likkqkadkvifa 35 
                 +e PtG GKt   l++    ++ + +  k+i+ 
  MMETSP1174-20130828|3042_1 105 LEMPTGTGKTACVLSLVVSyQLAHPEMGKLIYC 137
                 788*********999877658888888888874 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0032
   TIGR01587 125 nSvliiDEvhayeeytkalllallev 150
                 +Sv+i+DE+h +++   + l ++l++
  MMETSP1174-20130828|3042_1 296 ESVVIFDEAHNIDNVCIEALSVALDR 321
                 79************999999999875 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.3
   TIGR01587 161 msAtlpkllkeylekielveenealdlke....ekrfenqrisliekdkleeiss 211
                 +  t+p+ +  ++ ++ ++ e+  ++ +     e r  ++++  ie ++++e ++
  MMETSP1174-20130828|3042_1 598 LASTIPDGIVVFFTSYMYM-EKIVFEWDRlqvfE-RLLEKKLVFIETKDVVETTM 650
                 5667777777777666665.55555555534422.32233334444444444443 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.29
   TIGR01587 310 iQRlGRlaRygrkirenrevyvltel 335
                  Q +GR++R +++++    v+v+ + 
  MMETSP1174-20130828|3042_1 732 AQCVGRVMRSKKDYG----VMVFADS 753
                 4789*****999998....6666554 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.7e-05     0.018      14      54 ..      86     125 ..      72     139 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.7e-05
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela 54 
                 + ++  e+ +a++++ +gll+ pTG+GKT   +l+ +++++
  MMETSP1174-20130828|3042_1  86 QYKYMLEMKHALDAKGHGLLEMPTGTGKTA-CVLSLVVSYQ 125
                 456778999********************5.4555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.18s 00:00:00.89 Elapsed: 00:00:00.84
# Mc/sec: 1444.02
//
Query:       MMETSP1174-20130828|3045_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 912.69
//
Query:       MMETSP1174-20130828|3058_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 345.50
//
Query:       MMETSP1174-20130828|3057_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   33.5   0.0      3e-09   33.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00013   19.4   0.0    0.00019   18.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0055   13.1   0.0      0.009   12.4   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.2e-12     3e-09      25     202 ..      97     269 ..      85     274 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 2.2e-12
   TIGR03903  25 FrReialCarLshPnivaLlDsGeaedgl...l...FavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvt..aksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 F  e  + +++ hPn+++L  s + ++g+   l     v +y     l  vL+ +G Lp     +   q   a+aa h+a   hRD+kP+ni++++       ++ DFG ++    v+d             G+P+Y aPe          + +D+++ G++ +  + G + v+ a+ a  lyk++
  MMETSP1174-20130828|3057_1  97 FIAEKRALEAVDHPNVIKLRASDDIPEGIpkrLkqrLLVLDYCSNGDLFSVLK-QGRLPESIARAYSSQLFKAIAACHRAQRFHRDIKPENILMANDWS---LRLADFGFASGTLVVKD---------AQSCGTPTYMAPEFFQSSIASdlSSADVWSAGVVTFFLVYGVPPVERATSACWLYKKI 269
                 556777888999******9988877766322233336799**99999999996.8**************************************997654...56779*98754444555.........5678*********988875542278899999999999999999999999888888876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-07   0.00019      71     140 ..     131     207 ..     116     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.4e-07
   TIGR03724  71 ekkivmeyiegkklkdlleekel......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkksk 140
                 +  +v++y ++ +l  +l++ +l       + +++ ++++ +H+a+  h D+ ++Ni++ +d +l l DfG ++ + 
  MMETSP1174-20130828|3057_1 131 QRLLVLDYCSNGDLFSVLKQGRLpesiarAYSSQLFKAIAACHRAQRFHRDIKPENILMaNDWSLRLADFGFASGTL 207
                 556777777777777777776667767768899999**********************94466899*****998665 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   6.6e-06     0.009     221     303 ..     121     203 ..     111     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.6e-06
   TIGR01982 221 vPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqv...lrdgfFHaDlHpGNilvakdgkiialDfGiv 303
                 +Pe + ++  +r+l+l++    +  dl  + ++G  ++++a++  + ++k +    r   FH D+ p Nil+a+d ++ + DfG  
  MMETSP1174-20130828|3057_1 121 IPEGIPKRLKQRLLVLDYC---SNGDLFSVLKQGRLPESIARAYSSQLFKAIaacHRAQRFHRDIKPENILMANDWSLRLADFGFA 203
                 6777777778888888775...56788888899999*********999997633368899************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1039.82
//
Query:       MMETSP1174-20130828|3062_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|3059_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 973.87
//
Query:       MMETSP1174-20130828|3064_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 810.79
//
Query:       MMETSP1174-20130828|3065_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 773.52
//
Query:       MMETSP1174-20130828|3066_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 736.36
//
Query:       MMETSP1174-20130828|3071_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.2   1.3     0.0083   13.6   0.1    1.8  2  TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF
  ------ inclusion threshold ------
      0.032   12.1   0.6      0.073   11.0   0.3    1.6  1  TIGR00100 hypA: hydrogenase nickel insertion protein HypA


Domain annotation for each model (and alignments):
>> TIGR03147  cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.19   3.9e+02      40      50 ..       1      11 [.       1      20 [. 0.89
   2 !   13.6   0.1   4.1e-06    0.0083      18      51 ..     113     146 ..      99     159 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.19
   TIGR03147 40 elrcPqcqnqn 50
                +lrc q  n+n
  MMETSP1174-20130828|3071_1  1 NLRCRQSSNKN 11
                59****99998 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.1e-06
   TIGR03147  18 evvdtyqfknpeereralelakelrcPqcqnqnl 51 
                   v  y ++++++ +  ++l ++ rcPqc  q+ 
  MMETSP1174-20130828|3071_1 113 CKVCKYVYDENAQGTAFVSLPNSWRCPQCLSQKG 146
                 458899***********************99974 PP

>> TIGR00100  hypA: hydrogenase nickel insertion protein HypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   3.5e-05     0.073      64      97 ..     104     145 ..      96     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.5e-05
   TIGR00100  64 ieeekveieCedcseevepeideld........kCpkCkske 97 
                 i+e   +  C+ c++++ ++++ ++        +Cp+C s++
  MMETSP1174-20130828|3071_1 104 IVEATGKYSCKVCKYVYDENAQGTAfvslpnswRCPQCLSQK 145
                 677778899***********9888899***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|3078_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-17   57.7   0.3    5.8e-11   38.6   0.1    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.4e-16   57.0   0.3    1.2e-12   44.7   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.5e-13   46.3   0.0    5.4e-09   32.8   0.0    2.9  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    6.3e-12   42.8   0.0    4.6e-05   20.2   0.0    3.0  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    8.6e-12   42.6   0.0      2e-10   38.2   0.0    2.6  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    5.1e-07   26.6   0.1    1.6e-05   21.7   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.7e-06   23.1   0.0    0.00011   17.7   0.0    2.1  2  TIGR01054 rgy: reverse gyrase
    8.9e-06   22.8   0.0      0.023   11.5   0.0    2.6  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00061   16.0   0.0     0.0011   15.2   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00066   15.8   0.0      0.002   14.2   0.0    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0011   15.1   0.0     0.0017   14.5   0.0    1.3  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
     0.0078   12.6   0.0       0.53    6.6   0.0    2.6  2  TIGR00595 priA: primosomal protein N'
  ------ inclusion threshold ------
      0.011   12.1   0.1      0.026   10.8   0.0    1.5  2  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   1.8e-13   5.8e-11      14     274 ..      72     328 ..      68     334 .. 0.77
   2 !   17.2   0.0   5.6e-07   0.00018     281     353 ..     356     427 ..     349     452 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.8e-13
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk.....kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarL.r..rlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpee.eeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleanee 274
                 p + Q++++ ++ +g++  l a+TG+GKTla  lp++ +l+ +e+       k  +vl + P + La+++    ++  +  + +    +  GD  +++ra   +   d+ +       Ll  ++  +  +++++ vv+DE+  +l +  G  l+  L  +    + +++++ + ++AT+    +a + ll++++  + ++++a++      ++ lp+  ++ l  aG+  ++ l+++++  k+++ tl+F+Nt + +  + +aL e +++
  MMETSP1174-20130828|3078_1  72 PSSIQRAAVPQVLQGQNIALAASTGSGKTLAYLLPIVQALKIQEDMGydrlaKRPRVLVLVPTRELATQVLSVAKHLGHYSKFSSCCIVGGGDNGQQRRA--LTGVQDVCVASAG--RLLKHQELGHMHLSQVTHVVIDEVDTMLMQGFGPDLQKLLKPIlLspERRENVQFIVVTATMT---KAVRRLLEDGDLPQMRTLEADD-----LHQALPNAlHRMLNAAGQDKIEVLKDLVRG-KHQKPTLIFCNTVASCRAVTHALREETNN 328
                 67789********************************999944433333455999***************998888877777777777778887776665..6677888888766..467788888889*******************99877766654413124567889999999975...4555566666646667777733.....3333333303357889**********9987.77889***********9999999887655 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 5.6e-07
   TIGR04121 281 lhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepski 353
                  +Hg + +++R +    +kag+  ++vcT   + G+D +dv +vi+   p++    l R+GR++   +++ +i
  MMETSP1174-20130828|3078_1 356 SYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTAR-AGRKGEI 427
                 69************************************************************874.4444444 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   3.9e-15   1.2e-12      24     185 ..      59     228 ..      48     255 .. 0.74
   2 !   10.3   0.0   9.7e-05     0.031     306     390 ..     354     440 ..     347     445 .. 0.86

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 3.9e-15
   TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.........pratalylaPtkalaadqlravkelee.rdvraaty..dGdtpaeerewirekaryvltnPdmlhlgilpsharWak.flralryvvvdechsy.rGvfGshvalvlrrlr 185
                  + +a+++  +++p + q +a     +G+++++a++t sGk+layllP+++al+ +         +r ++l l Pt+ la+  l + k+l + +++ +++    Gd  +++r+    +   v +   +l      +h+   +  l ++ +vv+de+ +     fG ++ ++l+ ++
  MMETSP1174-20130828|3078_1  59 GLLEAVADLELKEPSSIQRAAVPQVLQGQNIALAASTGSGKTLAYLLPIVQALKIQedmgydrlaKRPRVLVLVPTRELATQVLSVAKHLGHySKFSSCCIvgGGDNGQQRRALTGVQDVCVASAGRLL------KHQELGHmHLSQVTHVVIDEVDTMlMQGFGPDLQKLLKPIL 228
                 567888999999*****************************************98866777766669***********************996555555541145665666666555555565554444......444444414889999****9976423447777777776655 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 9.7e-05
   TIGR03817 306 vaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda..lvvlvarddPldt 390
                 v +y +   +++r e    +k+G+   +++t+  + G+di  +  v+   fP     +  +aGr+ r+g++   l +++ rd Pl t
  MMETSP1174-20130828|3078_1 354 VRSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARAGRKGeiLSLVLKRDLPLAT 440
                 77888888888999989999********************************************99999854326677788989976 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015       4.8      17      49 ..      75     107 ..      70     117 .. 0.89
   2 !    6.4   0.0    0.0017      0.53     110     248 ..     182     326 ..     146     331 .. 0.73
   3 !   32.8   0.0   1.7e-11   5.4e-09     252     337 ..     355     440 ..     350     453 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.015
   TIGR01389  17 gqeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                  q + + +vl+g+++     tG Gk l Y +P 
  MMETSP1174-20130828|3078_1  75 IQRAAVPQVLQGQNIALAASTGSGKTLAYLLPI 107
                 5888999**********************9995 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0017
   TIGR01389 110 aPerleqdkflellerlkiallavDeahCv..sqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefvss...fdRenlafsvvkk..enkkkqlleylkkereksGiiYassRkkveelaeaLeskg 248
                 +  rl++++ l +++ ++++ + +De   +    +G D     k +    er +++ +i +tat +++vr+ +    +l + +++       + +n  +++ +   ++k + l + ++ +++k  +i++++ +    +++aL+++ 
  MMETSP1174-20130828|3078_1 182 SAGRLLKHQELGHMHLSQVTHVVIDEVDTMlmQGFGPDLQKLLKPILLSPERRENVQFIVVTATMTKAVRRLLE-DGDLPQMRTLEADdlhQALPNALHRMLNAagQDKIEVLKDLVRGKHQKPTLIFCNTVASCRAVTHALREET 326
                 567899999999999999999*****9875215577888888888888889999999************98554.33444444333221112345555544443113444556666777777999******999999999999875 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 1.7e-11
   TIGR01389 252 laYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallk 337
                   Yh+ + +++R ea+ +F   d+ ++v t     G+d  dv  vi +d P+n   y   aGR  R G+k e + l  ++Dl l+ 
  MMETSP1174-20130828|3078_1 355 RSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARAGRKGEILSLVLKRDLPLAT 440
                 68************************************************************************999999998764 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.2e-06   0.00039      14     249 ..      74     325 ..      66     330 .. 0.74
   2 !   20.2   0.0   1.5e-07   4.6e-05     254     331 ..     355     432 ..     351     447 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
   TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvisPLisLmeDqvlqLk.asdisatlLnsaqskeeakevladl.....kdgklk..llYvtPekvsksksllqkle....erkkltliavDeahCi..sqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilk..lLklkkpqvtitsfdRpnlkyeveekks.kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkk 249
                 + q  ++  vl+g++  +  +tG Gk L y lp v   ++   +   +   +  vl L  + ++++++L+ a+   + ++  + +      +g+ +  l  v    v++  +ll++ e    + +++t +++De+  +    +G D ++  k +    ++  +v +i +tat +++vr+ +    l +++ ++        pn   ++ +  + + +e l+ +++ +++ ++ +i+C++ +++  v++ L+++
  MMETSP1174-20130828|3078_1  74 SIQRAAVPQVLQGQNIALAASTGSGKTLAYLLPIVQALKIQEDMGYDRLAKRPRVLVLVpTRELATQVLSVAKHLGHYSKFSSCCivgggDNGQQRraLTGVQDVCVASAGRLLKHQElghmHLSQVTHVVIDEVDTMlmQGFGPDLQKLLKPILLSPERRENVQFIVVTATMTKAVRRLLEDgdLPQMRTLEADDLHQALPNALHRMLNAAGqDKIEVLKDLVRGKHQKPT-LIFCNTVASCRAVTHALREE 325
                 57889999**************************99999987777766666677777652556777777777776666665555444554666655224445555555666899888887777899********9875226688999999999988899999***************9744321122333333444444567766666666655899999999**9**9999.****************9976 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.5e-07
   TIGR00614 254 aaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfya 331
                 ++Yh  + +++r e   +f + +  ++v t     G++  dv +vi ++ p++   Y   +GR  R g k e + +  
  MMETSP1174-20130828|3078_1 355 RSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARAGRKGEILSLVL 432
                 68************************99999999****************************9888888877666555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18        57       4      27 ..      91     114 ..      89     170 .. 0.65
   2 !   38.2   0.0   6.3e-13     2e-10     107     322 ..     181     424 ..     172     437 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.18
   TIGR01587   4 ieAPtGyGKteaallwalklikkq 27 
                 + A tG+GKt a ll   +++k q
  MMETSP1174-20130828|3078_1  91 LAASTGSGKTLAYLLPIVQALKIQ 114
                 6799******99887666644433 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 6.3e-13
   TIGR01587 107 ksvlkevgeaeitlasian.SvliiDEvhayeey.....tkallla.llevlkdvdvkillmsAtlpkllkeylekielveenealdlke.ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapee......................e.iiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlit.e..lapidsLiQRlGRlaRygrk 322
                  s  + ++++e+  +++++   ++iDEv+ +  +      ++ll   ll   ++ +v++++ +At+ k ++++le+ +l++ + ++  ++ ++   n+   + +++ + +i++l++l++  k++k+ li++NtV   +++ ++l+e+ +++                        +  +H+ +  ++r++     l ++k  +  ++v T ++  +lDi +v  +i  +    pid L  R+GR aR grk
  MMETSP1174-20130828|3078_1 181 ASAGRLLKHQELGHMHLSQvTHVVIDEVDTMLMQgfgpdLQKLLKPiLLSPERRENVQFIVVTATMTKAVRRLLEDGDLPQMRTLEA-DDlHQALPNALHRMLNAAGQDKIEVLKDLVRG-KHQKPTLIFCNTVASCRAVTHALREETNNNfgdmdydsddaeggngggggasSpVRSYHGEMPSNERVEA----LGDFKAGDASILVCTDLAQRGLDIqDVAKVINfDfpRNPIDYLH-RAGRTARAGRK 424
                 55566678888888888652689******98765111114444333134445699*************************6555555.553667778888889999999******98876.78899********************999888*****************998637*************988....************************55555554242257999985.*******9998 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.028       8.8     265     320 ..      95     161 ..      82     209 .. 0.72
   2 !   21.7   0.0     5e-08   1.6e-05     486     561 ..     355     429 ..     350     461 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.028
   TIGR00643 265 VGsGKTvVavlallavie....sGy.......qvalmaPTeiLAeQhyeklrelleplgievalLtg 320
                  GsGKT+  +l ++++++     Gy       +v++++PT  LA+Q +  +++l +  +++   ++g
  MMETSP1174-20130828|3078_1  95 TGSGKTLAYLLPIVQALKiqedMGYdrlakrpRVLVLVPTRELATQVLSVAKHLGHYSKFSSCCIVG 161
                 69*****99999999875333358754444446899**********987766654444555444444 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5e-08
   TIGR00643 486 allhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclL 561
                   +hg ++s+e+ e+l +F++++ +iLv+T +   G+d+ +++ ++  d  R  +  LH   GR +R  +k+ +l 
  MMETSP1174-20130828|3078_1 355 RSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHR-AGRTARAGRKGEILS 429
                 568********************************************************8.599999999987763 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.4e-07   0.00011      79     224 ..      70     225 ..      55     274 .. 0.72
   2 !    3.2   0.0    0.0086       2.7     156     187 ..     354     385 ..     347     405 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.4e-07
   TIGR01054  79 sellsiqkmWakrvlknksFaivaPtGvGktt...fglvmslfla........kkgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknleklk...ykFdlvfvDDvDalLkas..knvdrilk 224
                  e+ siq+    +vl+++  a+ a tG Gkt    + +v +l ++        +k+ rv++++Pt+ L++qv +  ++l + ++++  +      +     +  + r   g  d+ ++ +  l k+ e  +    +   v++D+vD++L ++   +++++lk
  MMETSP1174-20130828|3078_1  70 KEPSSIQRAAVPQVLQGQNIALAASTGSGKTLaylLPIVQALKIQedmgydrlAKRPRVLVLVPTRELATQVLSVAKHLGHYSKFSSCC------IVGGGDNGQQRRALTGVQDVCVASAGRLLKHQELGHmhlSQVTHVVIDEVDTMLMQGfgPDLQKLLK 225
                 6899**************************9632245666665442222222246889*************998888888766654432......2333344445556677889999999999998876553355778899******998751145556665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0086
   TIGR01054 156 vvayhsklstkekkevkeriengdfdilitts 187
                 v  yh++++ +e+ e+   ++ gd+ il+ t 
  MMETSP1174-20130828|3078_1 354 VRSYHGEMPSNERVEALGDFKAGDASILVCTD 385
                 678**************************995 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00073      0.23      28      77 ..      90     148 ..      69     153 .. 0.75
   2 !   11.5   0.0   7.3e-05     0.023     208     383 ..     225     421 ..     219     431 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00073
   TIGR04095  28 ilkmatGtGktltaLalvskl.........aekikslvvvvvvPykhLveqWakeaekF 77 
                  l+ +tG+Gktl  L  +++          ++ +k+  v+v+vP ++L++q    a++ 
  MMETSP1174-20130828|3078_1  90 ALAASTGSGKTLAYLLPIVQAlkiqedmgyDRLAKRPRVLVLVPTRELATQVLSVAKHL 148
                 47789*******988765554477777675556677889************88777765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.3e-05
   TIGR04095 208 yPilveltedetdeYvelt....ekiskllakee...eeeseasealkaLLikRarligsa.enklkaLkkllskreeesktlvYcgdgkte........dekeeeerqi....devvkllg..eelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                 +Pil + +  e+ +++ +t    + + +ll++ +    ++ ea +  +aL     r++++a ++k++ Lk+l+  ++++  tl++c              +e++++   +    d++    g        v+++  e +++eR e l +f++g+   lv       G+D+ ++ + +      nP +++ R GR  R 
  MMETSP1174-20130828|3078_1 225 KPILLSPERRENVQFIVVTatmtKAVRRLLEDGDlpqMRTLEADDLHQALPNALHRMLNAAgQDKIEVLKDLVRGKHQK-PTLIFCNTVASCravthalrEETNNNFGDMdydsDDAEGGNGggGGASSPVRSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARA 421
                 6777777777777776555000044445555555665566677777777777778898887467888888888776655.567777643222222333332222222222000022222222224566789***************************************************************9885 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-06    0.0011     690     733 ..     357     400 ..     352     431 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-06
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                  Hg+m ++e  e + +F+ +++ +LvcT +   G+di ++  +i
  MMETSP1174-20130828|3078_1 357 YHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVI 400
                 6************************************9987776 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   3.6e+02      30      45 ..      87     102 ..      71     112 .. 0.69
   2 !   14.2   0.0   6.3e-06     0.002     470     542 ..     354     421 ..     350     460 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.1
   TIGR00631  30 keqvLlGvtGsGktft 45 
                 ++  L   tGsGkt++
  MMETSP1174-20130828|3078_1  87 QNIALAASTGSGKTLA 102
                 45678999*****976 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.3e-06
   TIGR00631 470 vkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn 542
                 v+  h e+ + erve + d+++g+  +lv  +L + GlD+ +v+ v  +D     f r+    +   Gr ar 
  MMETSP1174-20130828|3078_1 354 VRSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFD-----FPRNPIDYLHRAGRTARA 421
                 566799***************************************99988.....788888888888888886 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.3e-06    0.0017     265     289 ..      87     111 ..      71     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.3e-06
   TIGR01407 265 ekslIeAatGtGKtlgYLLpalyla 289
                 +++ + A+tG+GKtl+YLLp++   
  MMETSP1174-20130828|3078_1  87 QNIALAASTGSGKTLAYLLPIVQAL 111
                 566678**************98654 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0017      0.53       3      46 ..      92     146 ..      90     182 .. 0.73
   2 ?    3.2   0.0     0.018       5.6     305     337 ..     367     399 ..     360     445 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
   TIGR00595   3 eGvtGSGKtEvylkvie...........kvlakgksvlvLvPEiaLtaqllkrlk 46 
                 +  tGSGKt  yl  i            ++lak   vlvLvP   L++q+l+  k
  MMETSP1174-20130828|3078_1  92 AASTGSGKTLAYLLPIVqalkiqedmgyDRLAKRPRVLVLVPTRELATQVLSVAK 146
                 5679********865540111111222235788889*************987543 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.018
   TIGR00595 305 ealleqfaagkidiliGtqmiaKGldfpkvtlv 337
                  + l +f+ag++ il+ t +  +Gld ++v  v
  MMETSP1174-20130828|3078_1 367 VEALGDFKAGDASILVCTDLAQRGLDIQDVAKV 399
                 567889********************9998654 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.2e-05     0.026      12      65 ..      83     144 ..      75     156 .. 0.72
   2 ?   -2.9   0.0       1.2   3.8e+02     242     307 ..     257     324 ..     253     329 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.2e-05
   TIGR03117  12 alelkrialveaatGvGktlamllaaeallkerpd.a........kvaiavPtlalldqllee 65 
                  l+++ ial+ a+tG Gktla+ll + + lk ++d +        +v + vPt  l  q+l+ 
  MMETSP1174-20130828|3078_1  83 VLQGQNIALA-ASTGSGKTLAYLLPIVQALKIQEDmGydrlakrpRVLVLVPTRELATQVLSV 144
                 5677788875.9*************99999865442122222222677888888887777765 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
   TIGR03117 242 gllpqldlLvvDeahl.ledalasvlssalslr.rlhkaveklkakegkgissakvaavsdviqrlra 307
                 g lpq+  L  D+ h+ l +al ++l  a   + +++k++ + k +++  i  ++va+ ++v + lr 
  MMETSP1174-20130828|3078_1 257 GDLPQMRTLEADDLHQaLPNALHRMLNAAGQDKiEVLKDLVRGKHQKPTLIFCNTVASCRAVTHALRE 324
                 56778888877777764556666655444333347888888888899999999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.20s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 1155.90
//
Query:       MMETSP1174-20130828|3079_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.8   0.0      0.033   10.5   0.0    1.6  2  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.013        55     139     162 ..      16      39 ..      13      50 .. 0.82
   2 ?   10.5   0.0     8e-06     0.033     135     166 ..      52      83 ..      22      91 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.013
   TIGR01040 139 argqkiplfsaaglphneiaaqic 162
                  +g+k+p++ a g  +++  aqi 
  MMETSP1174-20130828|3079_1  16 NKGKKLPMIGADGTIYDNKLAQIG 39 
                 589**********99988888986 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8e-06
   TIGR01040 135 mnsiargqkiplfsaaglphneiaaqicrqag 166
                   s  +g+ +p+fsa g p+++  aqi   a+
  MMETSP1174-20130828|3079_1  52 TASTYKGKELPMFSADGTPYDNKLAQIGALAA 83 
                 467889****************99**976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|3081_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1174-20130828|3080_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.52
# Mc/sec: 423.89
//
Query:       MMETSP1174-20130828|3082_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1238.67
//
Query:       MMETSP1174-20130828|3085_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|3083_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.7   1.0      0.072   10.9   0.4    1.7  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.62   2.5e+03      62      80 ..      14      31 ..       8      33 .. 0.66
   2 ?   10.9   0.4   1.8e-05     0.072      28      72 ..     121     165 ..     115     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.62
   TIGR02209 62 RiekiAkkqLgmklpdanq 80
                Ri + A+ + ++k++ ++q
  MMETSP1174-20130828|3083_1 14 RIIDGARLK-QLKYRWKKQ 31
                666667766.677665555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.8e-05
   TIGR02209  28 qlnselqklqaeieklqkewndLqlEvaelsrheRiekiAkkqLg 72 
                 ++  +l++ + e + l++e+++L l   + s+++ ie++A+++L+
  MMETSP1174-20130828|3083_1 121 DVAEALASEDNELSTLEAEIAELSLKPMSVSERAAIEQLARDELK 165
                 55667777788888888888888888888999*********9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 736.94
//
Query:       MMETSP1174-20130828|3088_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|3100_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.0  15.5      0.015   10.8  10.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.016   11.9   3.7      0.017   11.8   2.6    1.0  1  TIGR00409 proS_fam_II: proline--tRNA ligase
      0.035   10.9  10.2      0.044   10.6   7.1    1.1  1  TIGR00414 serS: serine--tRNA ligase
        0.1    8.9  16.9       0.13    8.5  11.7    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
       0.11    7.9  13.5       0.12    7.7   9.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.77    6.5  11.9       0.96    6.1   8.2    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  10.7   2.2e-05     0.015     768     867 ..      18     118 ..       2     140 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.2e-05
   TIGR02168 768 leeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieele 867
                  ++++++a +    +a ++ ++lea++++ k+ +++lr++l+e+e+ l  +++  +++ e+++ +e+ ++a++++++e +++i++++ + e+ +++ e+++
  MMETSP1174-20130828|3100_1  18 DKDQIQKAAASSeTKAAKKTQSLEAKLDTSKKFFESLRTKLKEKEEVLALERALKDKAVEHVKTNETLMHAQAQTINEQKQTINNTNTQREEEQKAWENYR 118
                 22222222222213333334444444444444444444444444444444444444444444444444444444444444444444444444444433333 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.6   2.6e-05     0.017     240     338 ..      15     112 ..       6     163 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.6e-05
   TIGR00409 240 kkeekeapkaelkkvstpnvktiaelveflkleaekvvkallvkaveksevlvallvrgddelnevkaknelevaevlelateeeleakiaakkdllga 338
                 ++e+k++ +++ +  +t ++k+ ++l + l++++++  ++l +k  ek+evl++  +  d+ +++vk++++l +a+  +++++++  ++++++ + +++
  MMETSP1174-20130828|3100_1  15 EQEDKDQIQKAAASSETKAAKKTQSLEAKLDTSKKF-FESLRTKLKEKEEVLALERALKDKAVEHVKTNETLMHAQAQTINEQKQTINNTNTQREEEQK 112
                 455678888889999999************998765.677999999999999999*****************999888877755555554444433332 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.1   6.4e-05     0.044       7     121 ..      22     136 ..      13     168 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.4e-05
   TIGR00414   7 lrenlelvkeklkarglsveidleklselddklkkll.skieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdee 121
                 +++  +  ++k  ++ +s e +l+  ++  ++l+ +l +k e l  +r    k++++ k++++   +   + ++e+k+ +++++++ +e+++  e+  +++p++v  ++   k e 
  MMETSP1174-20130828|3100_1  22 IQKAAASSETKAAKKTQSLEAKLDTSKKFFESLRTKLkEKEEVLALERALKDKAVEHVKTNETLMHA-QAQTINEQKQTINNTNTQREEEQKAWENYRSRFPEIVPREITAPKAEG 136
                 5555555666777778888888888887766666555055556778899999999998877776444.48899*******************************999988777765 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.7   0.00019      0.13      43     137 ..      16     110 ..       7     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00019
   TIGR03319  43 keaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkee 137
                 +e +++ ++a  ++ +++ k++++le++l + +k +++l ++lk+kee l+ + +  +k  e+++++e+ +++++++++e++++++++ ++++ee
  MMETSP1174-20130828|3100_1  16 QEDKDQIQKAAASSETKAAKKTQSLEAKLDTSKKFFESLRTKLKEKEEVLALERALKDKAVEHVKTNETLMHAQAQTINEQKQTINNTNTQREEE 110
                 6667777888888999999999*****************************99988888889999999999999999**9999999988877765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.4   0.00018      0.12     831     938 ..      17     125 ..       2     149 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00018
   TIGR02169 831 lleeeiqel.qeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkke.reeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelsele 938
                   +++iq++  ++  ++ ++ +++e++++ +k+  e+l+++l+e+e +v  Le  lkd + e ++  e  ++++ + ++e++ +i++ +++ +e +++ e+  ++  e+ 
  MMETSP1174-20130828|3100_1  17 EDKDQIQKAaASSETKAAKKTQSLEAKLDTSKKFFESLRTKLKEKE-EVLALERALKDKAVEhVKTNETLMHAQAQTINEQKQTINNTNTQREEEQKAWENYRSRFPEIV 125
                 2233333320233334444555556666666666666666666554.344455554444333033333334444455555555555555555555555555555555554 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.2    0.0014      0.96     138     238 ..      23     120 ..       3     139 .. 0.49

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0014
   TIGR01843 138 ksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekgl..vsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqk 238
                 ++a +++  +  ++ ++lea+l+++++  ++lr++l+  +e l   r Lk+k +  v+ +e+L       +  + ++e+++++++++++ +e ++  ++++++
  MMETSP1174-20130828|3100_1  23 QKAAASSETKAAKKTQSLEAKLDTSKKFFESLRTKLKEKEEVLALERALKDKAVehVKTNETL-----MHAQAQTINEQKQTINNTNTQREEEQKAWENYRSR 120
                 333333334444555566666666666666666666666666666666665533112222222.....12222223333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       622  (0.151633); expected 82.0 (0.02)
Passed bias filter:                      261  (0.0636275); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 595.49
//
Query:       MMETSP1174-20130828|3101_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|3108_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.2   1.1      0.076   10.4   0.8    1.7  1  TIGR03753 blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family


Domain annotation for each model (and alignments):
>> TIGR03753  blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   1.9e-05     0.076     107     199 ..      40     149 ..      35     174 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.9e-05
   TIGR03753 107 peevaeifsalvglfalfvaelrlvlllivlllvllllllglkr...............kskrswrldaae..lllLlalfallpplvafglYFclwHSlrhvarivrvl 199
                 pe+ +++f+ l+++ ++ ++ + + + l +l++++++ ++ +                 +++ + + + +e      +++  ++ +++a  +YFc +HS+  ++   ++ 
  MMETSP1174-20130828|3108_1  40 PEAAHKLFRDLLDNPPAASSANSYTAYLSWLAIAIFMSFILYTIneframksgadtfrnETRHDQSYEPFEglSGQGWIFPVIIIVMLATVIYFCGLHSWLLFLARYSKS 149
                 6666677777777773333333333333333333332222222222444666666554322222222333310233477777778889999********98776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|3110_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-21   72.7   0.0      1e-15   55.6   0.1    2.1  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    4.4e-10   37.0   0.0    6.2e-10   36.5   0.0    1.1  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-06    0.0023     153     199 ..       3      49 ..       1      63 [. 0.85
   2 !   55.6   0.1   5.1e-19     1e-15     211     278 ..     135     192 ..     126     216 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.1e-06
   TIGR00005 153 ktvkkeYvalvkgefkskegtvdaplarvenkkglvavakssgkeav 199
                  +v+keY+a+v+g +  +e+tv ap++ ++++  +++v ++s    +
  MMETSP1174-20130828|3110_1   3 AHVEKEYQAVVIGWPAWDEVTVCAPIGPEPSSPFKMKVFPDSSSGVE 49 
                 589**********888**********************998744444 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 5.1e-19
   TIGR00005 211 aslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpatge 278
                  +lv++k++TGR HQiRVHl++ ghp++gD  Y+ + +           +r++Lhas+l f h++++ 
  MMETSP1174-20130828|3110_1 135 VALVRVKPMTGRRHQIRVHLKSTGHPILGDVCYAGDIF----------TYRLMLHASALTFFHTHSDS 192
                 689*******************************9888..........699*************9965 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     3e-13   6.2e-10     135     185 ..     137     187 ..     131     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 3e-13
   TIGR01621 135 lfilkphtGkthqlrvalkslGsailGdslygkaeesdrtylhafklefdy 185
                 l  +kp tG+ hq+rv lks G +ilGd  y++   + r  lha +l f +
  MMETSP1174-20130828|3110_1 137 LVRVKPMTGRRHQIRVHLKSTGHPILGDVCYAGDIFTYRLMLHASALTFFH 187
                 6678*****************************88999*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 779.94
//
Query:       MMETSP1174-20130828|3111_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 638.46
//
Query:       MMETSP1174-20130828|3116_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 490.91
//
Query:       MMETSP1174-20130828|3119_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 179.37
//
Query:       MMETSP1174-20130828|3124_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|3129_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 233.81
//
Query:       MMETSP1174-20130828|3136_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|3132_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00063   17.2   3.0     0.0012   16.2   0.0    2.5  3  TIGR00633 xth: exodeoxyribonuclease III (xth)
     0.0054   14.2   0.0       0.27    8.6   0.0    2.4  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.9e-07    0.0012      20      67 ..     192     242 ..     182     297 .. 0.77
   2 ?    0.5   0.0     0.038        77     137     152 ..     363     378 ..     325     384 .. 0.72
   3 ?   -4.6   1.0       1.3   2.8e+03     114     136 ..     521     543 ..     506     559 .. 0.52

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.9e-07
   TIGR00633  20 lellkeekpDvlclQEtKvae.eqlpkelleeegYevafssakkk..gysG 67 
                 l  l+ +++DvlclQE+ + + e+  + +l+e+g+e  f++++++  g++G
  MMETSP1174-20130828|3132_1 192 LRELADAAADVLCLQEIQADHfEDHIQPKLQEAGFEGIFKQKTREamGHKG 242
                 55678899***********99888888899*********999887786654 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.038
   TIGR00633 137 eldkekpvvlcGDlNv 152
                 +  ++ p+++cGD+N 
  MMETSP1174-20130828|3132_1 363 ASGRQLPLLICGDFNS 378
                 4445789********6 PP

  == domain 3    score: -4.6 bits;  conditional E-value: 1.3
   TIGR00633 114 ardlerleyklefweallaklek 136
                 ++++++   k + +++ +++ ++
  MMETSP1174-20130828|3132_1 521 QQQQQHHVFKNNNINNSQHQSQH 543
                 33333333333333333333333 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00013      0.27      19      60 ..     192     238 ..     185     296 .. 0.73
   2 !    2.9   0.0    0.0074        15     121     151 ..     350     380 ..     317     394 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00013
   TIGR00195  19 leflkeekpDvlclqEtkvad.eqfpkelvekegYhvffsga....k 60 
                 l  l +  +DvlclqE+++ + e+  + + +++g++  f+++     
  MMETSP1174-20130828|3132_1 192 LRELADAAADVLCLQEIQADHfEDHIQPKLQEAGFEGIFKQKtreaM 238
                 55677889*********997624444445678888888876554452 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0074
   TIGR00195 121 lqfleelqkyleklekkdkpvlicGDlniap 151
                  +  ++l +++   + ++ p+licGD+n  p
  MMETSP1174-20130828|3132_1 350 QHLIQKLDELVGIASGRQLPLLICGDFNSLP 380
                 45567777777777888889********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.54
# Mc/sec: 1459.21
//
Query:       MMETSP1174-20130828|3140_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1752.27
//
Query:       MMETSP1174-20130828|3142_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 776.10
//
Query:       MMETSP1174-20130828|3143_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-27   91.6   0.1      1e-17   61.8   0.0    3.4  2  TIGR00068 glyox_I: lactoylglutathione lyase
    3.5e-05   21.1   0.0      0.012   12.7   0.0    2.2  2  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase
    0.00018   18.6   0.0       0.16    8.9   0.0    2.4  2  TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
     0.0093   13.3   0.0       0.17    9.2   0.0    2.5  3  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase
  ------ inclusion threshold ------
      0.022   12.1   0.0       0.39    7.9   0.0    2.2  2  TIGR03213 23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
      0.039   12.3   0.0         19    3.7   0.0    3.2  3  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   1.5e-20     1e-17      17     110 ..      37     141 ..      20     172 .. 0.77
   2 !   24.5   0.0   4.6e-09   3.1e-06       9     147 ..     165     304 ..     157     307 .. 0.77

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 1.5e-20
   TIGR00068  17 lllhtmlrvgdldksldfytevlGmkllrkkdfpe...........ekfslaflgyedessaavieLtynwgtekydlGngfGhiaiavddvykacervkakGgk 110
                 +  h ++r  dl k+ df+++v+ m++lr++++ +           + +s  ++gye e++a  +e+tyn+g+eky +G+g   ++iavdd+ +a +r +akG  
  MMETSP1174-20130828|3143_1  37 RSAHWVIRTSDLRKTTDFFKDVFAMRVLRHEENDKpcpitcngdypTAWSKTMIGYETEDKAYSLEITYNYGIEKYPMGTGLASMTIAVDDAEAASKRAEAKGYP 141
                 557999***********************99875422333333333468999**************************************************964 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 4.6e-09
   TIGR00068   9 edeatkkylllhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieLtynw..gtekydlGngfGhiaiavddvykacervkakGgkvvrepgpvkg..gtkviafvkDPDGykiellekkktkea 147
                 e++a+++  ++ + lr  d+ ++ +fyt+vlGm+ + k+ ++        l+y+ ++ + v     n    +e+y+   +    a + + +y  + + +     vv+e    ++  gt  ia +kDPDG+ i l+ +++ ++a
  MMETSP1174-20130828|3143_1 165 EQPANRQEPFQSVELRAADVARTRQFYTSVLGMQEMPKTGTSAGD-DDIVLAYGGDQVSLVFISSPNAppRIEQYEGRHAISLPAESLKKIYGYISKARPD--LVVHEIMELDEalGTLFIAIIKDPDGFEICLVSSETFDKA 304
                 67788889999***************************9999887.5678999988887777667675225777887777666666677777766665543..35555544443228899**************999887765 PP

>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0021       1.4       4      36 ..      37      69 ..      34      73 .. 0.87
   2 !   12.7   0.0   1.8e-05     0.012       7      35 ..     176     204 ..     173     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0021
   TIGR03211  4 rlghvelrvldleealkfykdvlGleetgrdeq 36
                r +h  +r+ dl ++ +f+kdv  +++ +++e+
  MMETSP1174-20130828|3143_1 37 RSAHWVIRTSDLRKTTDFFKDVFAMRVLRHEEN 69
                788999*******************99887765 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.8e-05
   TIGR03211   7 hvelrvldleealkfykdvlGleetgrde 35 
                 +velr  d+ ++ +fy++vlG++e+ +++
  MMETSP1174-20130828|3143_1 176 SVELRAADVARTRQFYTSVLGMQEMPKTG 204
                 79**********************98876 PP

>> TIGR02295  HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0009      0.61       3      36 ..      36      69 ..      34      72 .. 0.85
   2 !    8.9   0.0   0.00023      0.16       7      33 ..     176     202 ..     173     211 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0009
   TIGR02295  3 lRvghvelvvtDLeksrefYseilGlreeekdke 36
                 R +h +++ +DL k+ +f+++++ +r+  ++++
  MMETSP1174-20130828|3143_1 36 ARSAHWVIRTSDLRKTTDFFKDVFAMRVLRHEEN 69
                589999******************9998766654 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00023
   TIGR02295   7 hvelvvtDLeksrefYseilGlreeek 33 
                  vel+ +D++++r+fY+ +lG++e  k
  MMETSP1174-20130828|3143_1 176 SVELRAADVARTRQFYTSVLGMQEMPK 202
                 589*******************98755 PP

>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.58     4e+02     167     189 ..      44      66 ..      17      77 .. 0.79
   2 ?    1.0   0.0     0.073        50      70      95 ..     115     140 ..     104     150 .. 0.87
   3 !    9.2   0.0   0.00025      0.17       3      72 ..     174     245 ..     172     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.58
   TIGR01263 167 ergelekvaefyekilgfkeiks 189
                 ++ +l+k+++f+++++ ++ +++
  MMETSP1174-20130828|3143_1  44 RTSDLRKTTDFFKDVFAMRVLRH 66 
                 3458999999***9999998776 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.073
   TIGR01263  70 Gdgvkdvafevedveaafeaaverga 95 
                 G g +++ ++v+d+eaa ++a ++g 
  MMETSP1174-20130828|3143_1 115 GTGLASMTIAVDDAEAASKRAEAKGY 140
                 78999***************999885 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00025
   TIGR01263   3 fdfvefavgdakqaakalveklGfeavak..etgsrekastvlrqgeitlvltaelsssseaaaflakHGdg 72 
                 f+ ve+ ++d  ++ + +++ lG++++ k  ++  ++  + ++  ++++lv+ ++++   +++++  +H  +
  MMETSP1174-20130828|3143_1 174 FQSVELRAADVARTRQFYTSVLGMQEMPKtgTSAGDDDIVLAYGGDQVSLVFISSPNAPPRIEQYEGRHAIS 245
                 6789999*********************9654455566677788889****9999998889*****999644 PP

>> TIGR03213  23dbph12diox: 2,3-dihydroxybiphenyl 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.049        33     145     168 ..      40      63 ..      24      73 .. 0.87
   2 ?    7.9   0.0   0.00057      0.39     148     176 ..     179     207 ..     171     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.049
   TIGR03213 145 hvvlavedvdaaleFYtevLGlql 168
                 h v++ +d  ++ +F+++v  ++ 
  MMETSP1174-20130828|3143_1  40 HWVIRTSDLRKTTDFFKDVFAMRV 63 
                 99**************99998875 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00057
   TIGR03213 148 lavedvdaaleFYtevLGlqlsdviklki 176
                 l+++dv+++ +FYt+vLG+q   +   ++
  MMETSP1174-20130828|3143_1 179 LRAADVARTRQFYTSVLGMQEMPKTGTSA 207
                 67889999999999999999876655555 PP

>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.064        44       4      33 ..      40      69 ..      37      74 .. 0.88
   2 ?    3.7   0.0     0.028        19      71      96 ..     115     140 ..     103     147 .. 0.84
   3 ?    2.0   0.0      0.09        62       7      51 ..     179     222 ..     174     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.064
   TIGR03081  4 hvaiavkdleeaaklyrdvlGakvseeeel 33
                h  i ++dl + + +++dv+ ++v  +ee+
  MMETSP1174-20130828|3143_1 40 HWVIRTSDLRKTTDFFKDVFAMRVLRHEEN 69
                7788999****************9988876 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.028
   TIGR03081  71 geGlhhialevddieaaletlkekgv 96 
                 g Gl  ++++vdd eaa++ ++ kg+
  MMETSP1174-20130828|3143_1 115 GTGLASMTIAVDDAEAASKRAEAKGY 140
                 679999***********999988875 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.09
   TIGR03081   7 iavkdleeaaklyrdvlGakvseeeelpeqgvkvvflelgetkle 51 
                 +   d+    ++y+ vlG++   +      g   ++l+ g  ++ 
  MMETSP1174-20130828|3143_1 179 LRAADVARTRQFYTSVLGMQEMPKTGT-SAGDDDIVLAYGGDQVS 222
                 5567899999*********98766554.33555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 1437.61
//
Query:       MMETSP1174-20130828|3144_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 962.55
//
Query:       MMETSP1174-20130828|3147_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-117  390.6  22.0   2.8e-117  390.6  15.3    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.6e-29   98.6  73.7    3.3e-25   86.4   0.0    3.9  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.9e-23   81.4   0.0    5.1e-13   47.1   0.0    3.3  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.8e-20   70.4   9.4      2e-07   27.9   0.0    4.0  4  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.1e-19   68.8   3.6      2e-18   64.7   1.3    2.8  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    5.1e-11   40.6   0.1    1.2e-05   22.9   0.0    2.2  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    9.5e-05   19.2   0.0    9.5e-05   19.2   0.0    2.9  4  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
  ------ inclusion threshold ------
      0.063   10.0   2.3       0.67    6.7   0.0    2.6  4  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4  20.6    0.0002       0.1       7      56 ..      24      75 ..      17      77 .. 0.53
   2 !  390.6  15.3  5.5e-120  2.8e-117       4     497 ..      49     529 ..      48     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0002
   TIGR01622  7 reRsRdssre..adrdrerdksrersRdrsrdRersrskerdrdfdrrdrdr 56
                ++Rs+  +r+  +drdrer ++r ++R+r  dRer+ +++rdrd dr+drd+
  MMETSP1174-20130828|3147_1 24 SKRSKGDDRDpkRDRDRERGRDRGGDRERGGDRERGGDRDRDRDRDRKDRDK 75
                3444433333003444444444555666666666666777777667755554 PP

  == domain 2    score: 390.6 bits;  conditional E-value: 5.5e-120
   TIGR01622   4 drereRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqk..llgvPvivqaseAEKNr.aakaatelsg.......dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG..lelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgsgalaiagtdskavqmaklsrdglvaklipsrelqaslsetsvlkalaeasfvpsevnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdkknsaGkvYlkfdsveaalaavkalngRyFagklitAafvvkdvyskss 497
                 drer+ +R++  ++drdr+rd++   + dr++dR+r+r ++rdrd  +  +d+d+ rdr+r++ + re++r+r+re++rr + ++    +e e   e+++k  r +ee+++  +D+rtvfv ql +k++eR ++ +F+kvgkv++v +i+D+  +r kG aYvE +d es++l l l+G    +   P++++aseAEKN  a++ at ++          p    + +LYvGnlh  itE++Lr + +pFGeie+v l++D+ +  skGy F++F +a+ a  A++k+ G  lel G+ ikvg++++  +   +  as     +d++e sgl++n+++r  l+++l ++      a+  ++++++    + + ++++++  +  + l a+ ++ s  + la a +v    ++++ c++++NmFdpate+ee++d +ik+Dv+ Ecsk g   h yv++++  G vYl f+ v+ a++a + l+gR+Fag++i   f++ + y   +
  MMETSP1174-20130828|3147_1  49 DRERGGDRERGGDRDRDRDRDRKDRDKGDRDKDRDRERRRDRDRDTGK--KDKDHDRDRRRDRSRSREKRRSRSRERRRRSPSTS----PEPETPEEKEKK--RQQEEIEDLTKDQRTVFVSQLVMKAEERSVRKYFEKVGKVKQVIMIRDKYTNRHKGFAYVEMKDLESIPLVLMLNGTVpdFQKFPILIKASEAEKNFlAKQEATPVQDqmggtgvVVP--SVQNRLYVGNLHVHITEDDLRSVLQPFGEIESVHLHRDEVG-TSKGYAFVKFLKADDANLAMQKIGGlgLELMGKAIKVGFVNEQSGSGVT-GASANWK-LDDDEGSGLQMNAQSRVALMARLGQN------AGIAPPMANQNSMASVIPNQAAIDA-A--KALAAHAAAASGGTQLAGAGPVA---GMPTFCFLIRNMFDPATETEEGWDSDIKEDVEGECSKFGTLLHSYVETRQPGGLVYLLFSTVDSAMKAAQSLHGRWFAGRMIMCEFLAPERYAAQF 529
                 789988888888888888888887777788888888887788886666..88888899999999999999999999865543333....444444444444..568999**********************************************************************85449***************6155566666643333222222..3478*********************************9765.***********************99779***********9996555444.2333333.779********************998......2334444443434444455555552.2..23445556666666677777777...7*************************************************************************************9988887665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9  51.2    0.0016      0.82       1     114 [.      32     147 ..      32     156 .. 0.80
   2 !   86.4   0.0   6.4e-28   3.3e-25     171     507 ..     151     527 ..     150     529 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0016
   TIGR01642   1 rDkekdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.rrrSRdrirrrsrsssseskerrrsrkrsssnekkkdd.kkrslw 114
                 rD  +dr+rE  r+r +d+ +  +R+R  dr+rdRdRdr+dr++  r+ +RdR+rrr ++r++ + ++d+ r r Rdr r+r++ +s+  + rrrs ++s+  e+  ++ kkr++ 
  MMETSP1174-20130828|3147_1  32 RDPKRDRDRERGRDRGGDRERGGDRERGGDRDRDRDRDRKDRDKGDRDKDRDRERRRDRDRDTGKKDKDHdRDRRRDRSRSREKRRSRSRERRRRSPSTSPEPETPEEKeKKRQQE 147
                 6889*******************************************************999866555542667778877888877777777788888888777654331444443 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 6.4e-28
   TIGR01642 171 qatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsii..yenvslkirRphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGi..klgdkkLnvkrAtvgakqatieken................................................sdvlvtllakalsqsilq............................iGekptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykk 507
                 + t+ +R ++v+ +  +a+e +v ++f+++    gk k     ++   + n+ k Fa++E++  e   l+l l++ +  ++  ++ i+  +  +  + a+ e + +  ++ +++        +v+  +++ly+gnL  ++++d ++ +L++FG++ +  l +d + G sKGyaF+++  + +++lA++ + G+  +l +k ++v +  v+ +     +                                                                   +                            + + pt    + n+  +    ++    +i edv  e+sk+Gtl    +     +r   +G G v+l ++ v+sa kA + l+Gr F++r+++  f  +++y++
  MMETSP1174-20130828|3147_1 151 DLTKDQRTVFVSQLVMKAEERSVRKYFEKV----GKVKQ--VIMIRDKYTNRHKGFAYVEMKDLESIPLVLMLNGTVpdFQKFPILIKASEAEKNFL-AKQEATPV--QDQMGGT-----GVVVPSVQNRLYVGNLHVHITEDDLRSVLQPFGEIESVHLHRD-EVGTSKGYAFVKFLKADDANLAMQKIGGLglELMGKAIKVGF--VNEQSGSGVTGAsanwkldddegsglqmnaqsrvalmarlgqnagiappmanqnsmasviP----------------NqaaidaakalaahaaaasggtqlagagpVAGMPTFCFLIRNMFDPATETEEGWDSDIKEDVEGECSKFGTLLHSYVE----TR--QPG-GLVYLLFSTVDSAMKAAQSLHGRWFAGRMIMCEFLAPERYAA 527
                 789************************985....44443..368999***************************98644777777777665555344.22222222..2233333.....45788999********************************999.68********************99988761156677766655..4444433222222357888888998888877777777777777766666666664444440................04444444444566666666667779999999*****9999998887777777778***************9875442....22..344.99**************************************86 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.4e-09   1.2e-06     268     334 ..     155     221 ..     108     238 .. 0.80
   2 !   47.1   0.0   9.9e-16   5.1e-13       6      82 ..     267     344 ..     263     358 .. 0.86
   3 ?    4.1   0.0     0.012       6.1     230     344 ..     396     519 ..     363     525 .. 0.55

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.4e-09
   TIGR01661 268 agycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGyt 334
                     +fv  l  +++e  + + f + G v++v +ird  tn+ kG+++v m + + ++  +l lnG+ 
  MMETSP1174-20130828|3147_1 155 DQRTVFVSQLVMKAEERSVrKYFEKVGKVKQVIMIRDKYTNRHKGFAYVEMKDLE-SIPLVLMLNGTV 221
                 45679******9999866559******************************9985.556677899875 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 9.9e-16
   TIGR01661   6 livnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGl..rlqnktikvsyarP 82 
                 l v  l   +t++++rs++  +Geies+ l rd v G s Gy fv +++ +da+ a++ + Gl   l  k+ikv +   
  MMETSP1174-20130828|3147_1 267 LYVGNLHVHITEDDLRSVLQPFGEIESVHLHRDEV-GTSKGYAFVKFLKADDANLAMQKIGGLglELMGKAIKVGFVNE 344
                 6677788899***********************98.99**********************976116679*****99765 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.012
   TIGR01661 230 lqqhavaqqaaaqrasplaadgavaglaagaqiaa....sdgagycifvynl...spdtde........avlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsf 344
                  + + +++qaa   a  laa++a+a+   g+q+a     +    +c ++ n+   +++t+e         v    ++fG++        ++t++  G  ++  +  d a++a +sl G  +++r++   f
  MMETSP1174-20130828|3147_1 396 SMASVIPNQAAIDAAKALAAHAAAASG--GTQLAGagpvAGMPTFCFLIRNMfdpATETEEgwdsdikeDVEGECSKFGTLLHS----YVETRQPGGLVYLLFSTVDSAMKAAQSLHGRWFAGRMIMCEF 519
                 333333444443333333333333222..2222223232223358888888744455665511111110333445556655443....357899999999999999999999999999999999876655 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07   0.00019     110     153 ..     161     204 ..     138     221 .. 0.77
   2 !   27.9   0.0     4e-10     2e-07     104     179 ..     262     340 ..     228     353 .. 0.76
   3 ?   -5.2   5.9       4.5   2.3e+03     277     314 ..     386     423 ..     367     440 .. 0.61
   4 !   25.3   0.0   2.5e-09   1.3e-06     514     594 ..     441     518 ..     437     526 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.6e-07
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve 153
                 v  +    +e  +r+ f+  G +k + m  d  t++hkgfa+ve
  MMETSP1174-20130828|3147_1 161 VSQLVMKAEERSVRKYFEKVGKVKQVIMIRDKYTNRHKGFAYVE 204
                 55566677899999999999999999999999999999999998 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4e-10
   TIGR01645 104 aimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmnga..llGGrnlkvg 179
                 ++  r+ vG +   + ed lr  ++PfG i s+ +  d v    kg+afv     + a la++++ g    l G+ +kvg
  MMETSP1174-20130828|3147_1 262 SVQNRLyVGNLHVHITEDDLRSVLQPFGEIESVHLHRDEVG-TSKGYAFVKfLKADDANLAMQKIGGLglELMGKAIKVG 340
                 66778889999999999999999999999999999999985.56999999954568899999998874214668899988 PP

  == domain 3    score: -5.2 bits;  conditional E-value: 4.5
   TIGR01645 277 avtPPdallqPatvsalPaaaavaaaaata.kitaaeav 314
                  ++PP+a  q + +s +P  aa+ aa a a    aa   
  MMETSP1174-20130828|3147_1 386 GIAPPMAN-QNSMASVIPNQAAIDAAKALAaHAAAASGG 423
                 58899985.667789999999987765443033333222 PP

  == domain 4    score: 25.3 bits;  conditional E-value: 2.5e-09
   TIGR01645 514 vlrnmvtP.....kdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                 ++rnm +P     +  d +++++++ ec+kfg++    + + + g       l  +++ fs+   +++a ++l Gr+f+Gr ++ e
  MMETSP1174-20130828|3147_1 441 LIRNMFDPateteEGWDSDIKEDVEGECSKFGTLLHSYVETRQPG------GL--VYLLFSTVDSAMKAAQSLHGRWFAGRMIMCE 518
                 689**99944433457899999***********998888877777......34..5777999999*****************9988 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   1.3   3.9e-21     2e-18     167     348 ..     144     327 ..     133     411 .. 0.84
   2 ?    2.5   0.0     0.026        13     321     354 ..     480     513 ..     457     524 .. 0.69

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 3.9e-21
   TIGR01628 167 ksere.atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkde.knrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerke.kaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhg 348
                 ++++e    +k    ++v +l  + +e ++r+ F k G++  +i+ +d+  nr +gfa+v+ ++ e+    v  lng+  +  + +  +  + a k    ++e     ++     +   +  + lYv Nl   +++ +Lr + ++fGei S+++ +de ++Skg+ FV f ++++An A++++ g
  MMETSP1174-20130828|3147_1 144 RQQEEiEDLTKDQRTVFVSQLVMKAEERSVRKYFEKVGKVKQVIMIRDKyTNRHKGFAYVEMKDLESIP-LVLMLNGTVPDFQKFPILIKASEAEKNFLAKQEATPVQDQMGGTGVVvPSVQNRLYVGNLHVHITEDDLRSVLQPFGEIESVHLHRDEVGTSKGYAFVKFLKADDANLAMQKIGG 327
                 3333344555566689**************************999888746899************976.57799**98886667777777777777666666666666665555441555566********************************************************99876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.026
   TIGR01628 321 ekekSkgFGFVcfssqeeAnkAvtelhgkilngk 354
                 e+++  g  +  fs+ + A+kA + lhg+ + g+
  MMETSP1174-20130828|3147_1 480 ETRQPGGLVYLLFSTVDSAMKAAQSLHGRWFAGR 513
                 4555667777778888888888888888877776 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06     0.002     196     275 ..     159     237 ..     147     264 .. 0.78
   2 !   22.9   0.0   2.4e-08   1.2e-05     195     255 ..     266     325 ..     261     391 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4e-06
   TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeeh 275
                 ++v++l     +  +   f k g++ q  ++rdk+t + +g a+v +    e+   +  ln  +p+    p+ ++ +e  
  MMETSP1174-20130828|3147_1 159 VFVSQLVMKAEERSVRKYFEKVGKVKQVIMIRDKYTNRHKGFAYVEMKDL-ESIPLVLMLNGTVPDFQKFPILIKASEAE 237
                 677788888888888999***************************98665.56678889*******99999999877643 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.4e-08
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisal 255
                  lyv nl   it+d+l +++  +g+i    + rd   g+ +g afv+f k ++a+ a+  +
  MMETSP1174-20130828|3147_1 266 RLYVGNLHVHITEDDLRSVLQPFGEIESVHLHRDE-VGTSKGYAFVKFLKADDANLAMQKI 325
                 69************************999999996.6999***********9999887665 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.8   4.8         8   4.1e+03     369     410 ..      40      81 ..      29      86 .. 0.56
   2 !    5.1   1.0    0.0035       1.8     227     271 ..     150     193 ..     142     246 .. 0.78
   3 !   19.2   0.0   1.9e-07   9.5e-05      55     119 ..     261     325 ..     254     340 .. 0.64
   4 ?   -4.2   0.3       2.3   1.2e+03     456     478 ..     393     411 ..     360     430 .. 0.43

  Alignments for each domain:
  == domain 1    score: -9.8 bits;  conditional E-value: 8
   TIGR01648 369 rgrgrgaagsraaGvrGlglrGyeayrglysgyhekkgkred 410
                 r+rgr ++g+r  G+    ++  +  r+  ++ ++k+++ +d
  MMETSP1174-20130828|3147_1  40 RERGRDRGGDRERGGDRERGGDRDRDRDRDRKDRDKGDRDKD 81 
                 678888888885555444443333444444444454444444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0035
   TIGR01648 227 edvmakvkilyvrnlmletteeiieksfsefkpGavervkkird.y 271
                 ed  +  + ++v  l++++ e  ++k f+++  G+v +v  ird y
  MMETSP1174-20130828|3147_1 150 EDLTKDQRTVFVSQLVMKAEERSVRKYFEKV--GKVKQVIMIRDkY 193
                 6667777889999999999999999999999..9999999999832 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 1.9e-07
   TIGR01648  55 PerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkel 119
                 P     ++vG +   + ed+l  +++  G+i  + l  d  G  +Gyafv f + ++a+ a++++
  MMETSP1174-20130828|3147_1 261 PSVQNRLYVGNLHVHITEDDLRSVLQPFGEIESVHLHRDEVGTSKGYAFVKFLKADDANLAMQKI 325
                 55555566666666666666666666666666666666666666666666666666666666554 PP

  == domain 4    score: -4.2 bits;  conditional E-value: 2.3
   TIGR01648 456 edgriltlekiiipaavsqdpai 478
                 +++    +   +ip  +  d+a 
  MMETSP1174-20130828|3147_1 393 NQNS---MAS-VIPNQAAIDAAK 411
                 2222...111.222222222222 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.027        14       5      51 ..     159     211 ..     155     263 .. 0.80
   2 ?    6.4   0.0    0.0016       0.8       6      77 ..     268     344 ..     218     350 .. 0.68
   3 ?    6.7   0.0    0.0013      0.67       6      79 ..     268     346 ..     261     401 .. 0.78
   4 ?   -1.8   0.1      0.48   2.5e+02     246     296 ..     380     430 ..     353     435 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.027
   TIGR01649   5 vHvRnlpeevveadlvelliefGkvsyvlvlk......gkrqAlvEfedeesA 51 
                 v v +l+ +  e  + +  ++ Gkv  v++++      +k  A+vE++d es 
  MMETSP1174-20130828|3147_1 159 VFVSQLVMKAEERSVRKYFEKVGKVKQVIMIRdkytnrHKGFAYVEMKDLESI 211
                 7788889999999999999999********972222224567999*9999985 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0016
   TIGR01649   6 HvRnlpeevveadlvelliefGkvsyvlvlk.....gkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqySts 77 
                  v nl+ +++e dl ++l++fG++  v + +      k  A+v f + + A+ + + +    +++ G+ + v + ++
  MMETSP1174-20130828|3147_1 268 YVGNLHVHITEDDLRSVLQPFGEIESVHLHRdevgtSKGYAFVKFLKADDANLAMQKIGGLGLELMGKAIKVGFVNE 344
                 45566667777777777777777766654331111145566666666666666666666666666666666555554 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0013
   TIGR01649   6 HvRnlpeevveadlvelliefGkvsyvlvlk.....gkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStske 79 
                  v nl+ +++e dl ++l++fG++  v + +      k  A+v f + + A+ + + +    +++ G+ + v + +++ 
  MMETSP1174-20130828|3147_1 268 YVGNLHVHITEDDLRSVLQPFGEIESVHLHRdevgtSKGYAFVKFLKADDANLAMQKIGGLGLELMGKAIKVGFVNEQS 346
                 5778999999999999999999998887654222225788999999999999888888888888888888888887775 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.48
   TIGR01649 246 glssrtgalaplalgdraglaaglapsreslalasaalapaisstapaasg 296
                  l+ + g ++p+a ++++    + + + + +++ +a +a a+  t++a+ g
  MMETSP1174-20130828|3147_1 380 RLGQNAGIAPPMANQNSMASVIPNQAAIDAAKALAAHAAAASGGTQLAGAG 430
                 455566889999999999988887777777777777777677666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:00.76
# Mc/sec: 955.18
//
Query:       MMETSP1174-20130828|3150_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|3149_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   16.2   0.0     0.0027   15.4   0.0    1.4  1  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.5e-07    0.0027     138     185 ..     163     211 ..     140     221 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.5e-07
   TIGR02466 138 dprldslmaapkakknakraverfvkvkPqegrvllfes.wLrHeVtpn 185
                 d+  ++   + + ++++++   +++ v+P++gr++lf s  L HeVtp 
  MMETSP1174-20130828|3149_1 163 DQDDNDSDHHHNNHHHKDKGCCGYTDVAPKAGRLVLFRSrELLHEVTPV 211
                 5555555567778899999999****************956*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 667.86
//
Query:       MMETSP1174-20130828|3154_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|3153_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|3160_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-18   62.1   7.7    3.2e-12   43.5   2.0    2.1  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    1.3e-05   22.1  12.0    0.00018   18.4   8.3    2.1  1  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   7.9e-09   1.6e-05     250     311 ..      87     150 ..      75     164 .. 0.83
   2 !   43.5   2.0   1.6e-15   3.2e-12     348     445 ..     168     268 ..     151     269 .] 0.87

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.9e-09
   TIGR00894 250 kslPiKailkSl..pvwaivvasvghiwgleilltylPtfiksvlhlniren.GllSsLPyllaf 311
                 + +P+K il  +  ++w   + +++++w   +llt+lP ++++ l+l++++  G+l  L yl+++
  MMETSP1174-20130828|3160_1  87 HAIPFKQILAPRnaKLWGLFFQHFTFNWFSYTLLTELPSYMNDELGLDLTAAsGYL-VLIYLAKW 150
                 579*****97653379********************************98641655.45566655 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 1.6e-15
   TIGR00894 348 glivvalayls...snaisaiilltlanalaglvlsGvlinaldlaPryagiikgvttligslaglissllvgqllkqdsksaWkkvFllaalvavislif 445
                 + +++++ y +   s+   a+ l+  a+   gl  +G+ +n +++aP++ag + + ++  +++ g++++l++++l++ +  s W++vF+laa+++v++ ++
  MMETSP1174-20130828|3160_1 168 AAFLLSVGYWGvkaSQQGRAVGLMACATFCIGLAGGGFNVNFVEVAPNHAGALYAFSNFFANISGILTPLVTAKLVEGGGVSGWRNVFILAAALNVTAAVV 268
                 5567777787744445567999**************************************************************************99875 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   8.3   8.8e-08   0.00018     213     391 ..      98     263 ..      87     269 .] 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.8e-08
   TIGR00893 213 kdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalalig 391
                 ++ +++gl++  f+ n   y++lt  p+y+++e+gl+l  a+            g + + +l+ +   + + ++    ++  a  +ls+   +++ + ++  a+ l+a a f+ gla  ++ v    + ++ ag+  ++ n+++n++gi++P+v+  +++  G+  ++ +++ a+al +
  MMETSP1174-20130828|3160_1  98 RNAKLWGLFFQHFTFNWFSYTLLTELPSYMNDELGLDLTAAS------------GYLVLIYLAKWPTVRARVVTEWSSFGFAAAFLLSVGYWGVK-ASQQGRAVGLMACATFCIGLAGGGFNVNFVEVAPNHAGALYAFSNFFANISGILTPLVTAKLVEGGGVSGWRNVFILAAALNV 263
                 57799*******************************865544............33333344444444433344444555555567888888887.7788899*********************999**********************************999888777766665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 657.50
//
Query:       MMETSP1174-20130828|3165_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.59
# Mc/sec: 451.89
//
Query:       MMETSP1174-20130828|3169_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 927.22
//
Query:       MMETSP1174-20130828|3173_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|3180_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|3181_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-23   79.7   1.5    2.1e-11   41.5   0.2    2.1  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.4e-18   64.9   0.2    8.2e-18   62.4   0.1    2.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.8e-18   63.6   1.1    1.5e-08   31.5   0.0    2.2  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.4e-17   61.8   0.4    3.1e-17   60.6   0.3    1.6  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      2e-17   61.2   0.1    3.5e-09   34.0   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.8e-17   59.6   0.5    1.9e-08   31.8   0.2    2.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.6e-16   58.4   0.1    5.4e-16   56.7   0.1    1.8  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.7e-16   58.4   2.3    9.2e-16   55.9   1.6    1.9  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.3e-16   57.8   1.6    7.3e-16   56.2   1.1    1.7  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-15   55.8   0.1    1.8e-07   28.9   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.1e-15   54.8   0.2    8.9e-08   28.7   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.5e-15   55.2   0.1    7.5e-09   33.3   0.0    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.3e-15   52.0   1.1      1e-06   25.4   0.4    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.2e-14   51.5   0.0    1.5e-13   48.8   0.0    1.9  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.5e-14   50.6   0.0    1.2e-07   29.3   0.0    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.5e-14   49.8   0.0    1.8e-07   27.7   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.6e-14   49.4   0.0    3.9e-08   29.8   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.2e-14   49.6   0.0    7.7e-07   26.6   0.0    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      1e-13   49.4   0.3    6.5e-13   46.8   0.2    1.9  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.8e-13   47.9   0.0    8.8e-13   45.6   0.0    1.8  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.3e-13   47.3   0.4    2.7e-06   24.7   0.0    2.1  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.6e-13   46.6   0.0    3.5e-12   44.2   0.0    1.8  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.4e-13   46.3   0.1    1.4e-08   32.4   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      3e-12   44.0   1.5    3.4e-11   40.5   1.0    2.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    3.6e-12   43.5   0.0    6.4e-07   26.1   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
    6.3e-12   43.2   1.2    2.2e-11   41.4   0.8    1.7  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.1e-11   41.8   0.1      1e-06   25.3   0.0    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.3e-11   42.1   0.1    1.1e-05   22.6   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.4e-11   41.9   0.1    3.5e-11   40.5   0.0    1.6  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.6e-11   41.7   1.4    1.1e-10   39.0   1.0    1.9  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.6e-11   41.4   0.0    4.4e-11   40.6   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.7e-11   40.1   0.0    7.6e-11   39.0   0.0    1.4  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.3e-11   40.8   0.1    1.4e-10   39.1   0.1    1.7  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    6.5e-11   39.9   0.0    2.2e-05   21.8   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.3e-10   38.1   0.0    8.9e-05   18.8   0.0    2.1  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.6e-10   37.9   0.8    2.5e-09   34.0   0.5    2.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.1e-10   37.6   0.0    1.6e-06   24.8   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.6e-10   38.0   2.3    5.2e-09   33.8   1.6    2.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.7e-10   37.1   0.9    3.4e-09   34.2   0.6    1.9  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.5e-10   36.3   0.1    1.5e-07   28.9   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-09   35.2   0.8      2e-08   31.5   0.6    2.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.5e-09   34.4   4.0    1.4e-08   31.9   2.8    1.9  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.9e-09   34.3   4.0    7.7e-07   26.3   0.2    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    9.8e-09   32.8   0.0    2.9e-08   31.3   0.0    1.7  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.2e-08   32.8   2.3    3.7e-08   31.2   1.6    1.7  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.3e-08   32.3   0.4    5.3e-05   20.5   0.0    2.3  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.5e-08   29.0   0.1    0.00062   16.2   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.9e-07   26.7   0.2    3.8e-06   23.5   0.0    1.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.5e-07   26.6   0.2     0.0002   17.9   0.0    2.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    9.1e-07   25.7   0.0    1.1e-05   22.1   0.0    1.9  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.1e-06   22.0   0.0    7.7e-06   21.4   0.0    1.2  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    9.8e-06   22.1   0.1    0.00057   16.3   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      7e-05   20.2   1.0    0.00013   19.4   0.7    1.4  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    0.00011   17.7   0.0     0.0053   12.2   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00014   17.2   0.7     0.0012   14.2   0.5    1.9  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0011   13.7   0.1     0.0023   12.6   0.1    1.4  1  TIGR01257 rim_protein: rim ABC transporter
     0.0052   13.8   0.0     0.0094   12.9   0.0    1.3  1  TIGR00750 lao: LAO/AO transport system ATPase
     0.0073   13.3   0.8        0.5    7.2   0.0    2.3  2  TIGR00611 recf: DNA replication and repair protein RecF
  ------ inclusion threshold ------
      0.031   11.9   0.2       0.11   10.1   0.0    1.9  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   5.7e-12     4e-10       2      67 ..      32     102 ..      31     116 .. 0.85
   2 !   41.5   0.2   3.1e-13   2.1e-11     127     198 ..     164     235 ..     141     261 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 5.7e-12
   TIGR03864   2 leveglsfay.....gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrr 67 
                 +e+++l+f+y     g + +l+++++++a+g+ + L+G nGaGkstL+ +l +   ++  +++v+G+d  r
  MMETSP1174-20130828|3181_1  32 VEIKDLDFSYesrrdGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFR 102
                 67888888883333355679*********************************9999999******99765 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3.1e-13
   TIGR03864 127 eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea 198
                 e +++ ++ G+rrrv +   ll   ++LLlDe t  LD+  r++l+  ++e + ++g ++++ath++d +++
  MMETSP1174-20130828|3181_1 164 EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFDGLDE 235
                 5578899************************************************************98876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   1.2e-19   8.2e-18      10     192 ..      48     228 ..      34     234 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.2e-19
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkek.aklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtH 192
                  k +lk+l++++ +G+   ++G  G+GKstlL ilg    ++  +v + gk++ + l  + ++ ++ ++ g     fa      +++ +++ l + kk +++  ++  +++e +g++++   +++ +s+G++ Rv l   ll++++++l DE t++LD   r+ +l  l+e    +g ti+ +tH
  MMETSP1174-20130828|3181_1  48 VKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAfRDLGLNMTRAYMDTNWGMRTVAFAGYG-VPLQSDIRV-LDMMKKLQSDFPERRDRLIEILGVNTE--WRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEeTVTRGATIVYATH 228
                 469*********************************999999999999998851456666677777777666544444332.357778888.888899999999999******999875..57899**********************************9999988887526899********* PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.2e-10   1.5e-08     329     390 ..      26      91 ..       4     105 .. 0.78
   2 !   30.6   0.3   4.2e-10   2.9e-08     470     528 ..     168     228 ..     153     230 .. 0.92

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.2e-10
   TIGR02868 329 asekptlelrdlsvsypgae...e.vlkgvsldlepGervavvGasGaGKstLlallaglldplkG 390
                 +++ p +e++dl +sy+      + vlk+++++l+ G+r  ++Ga GaGKstLl +l g   ++  
  MMETSP1174-20130828|3181_1  26 EDQCPAVEIKDLDFSYESRRdgvKdVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGD 91 
                 4478999*****99997543111349******************************9886655555 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 4.2e-10
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvth 528
                 +++S G+r+R+ l   Ll ++++llLDE t  LD+ ++++ll  L    +++g t+v  th
  MMETSP1174-20130828|3181_1 168 HMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQeeTVTRGATIVYATH 228
                 579******************************************9877899999**9999 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.3   4.4e-19   3.1e-17       9     194 ..      52     240 ..      46     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 4.4e-19
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd..evRrsigvvpqkasvded...LtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrv 194
                 ++++n+++ +g+   l+G nGAGK+t++++L +    ++ ++rv G D  r+      R  +     +++v  +   ++ + ++ +l  +  l+ +   er ++l+e++ +    + +++  s G+rrr++l  +l+   ++l LDE t+ LD+  r+ +   ++e   + g ti+ +th ++  d+   ++
  MMETSP1174-20130828|3181_1  52 LKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGlnMTRAYMDTNWGMRTVAFAgygVPLQSDIRVLDMMKKLQSDF-PERRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTrGATIVYATHIFDGLDEWPTHI 240
                 789******************************99999999**********9864366766666666666654311133445555555555554444.467799***988765..6678999************************************9999887766555*********999988877666 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   5.1e-11   3.5e-09     314     384 ..      24      98 ..       3     125 .. 0.80
   2 !   25.4   0.0     2e-08   1.4e-06     456     515 ..     167     228 ..     141     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 5.1e-11
   TIGR02857 314 ltaaassslelenvsvayegrk....palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga 384
                 l +++  ++e+++++++ye r+    ++lk+++++++ g++  l+Ga GaGKstll++l g   + + +++v g+
  MMETSP1174-20130828|3181_1  24 LVEDQCPAVEIKDLDFSYESRRdgvkDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGK 98 
                 4445555999*****99965432223799**********************************999999999665 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2e-08
   TIGR02857 456 gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealre..laegrtvllvaH 515
                  +++S Gqr+R+ L   llr+ ++lllDE t +LD    +++l  l+e  +++g+t++ ++H
  MMETSP1174-20130828|3181_1 167 MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEetVTRGATIVYATH 228
                 5789*************************************999997622569999999999 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   2.7e-10   1.9e-08       5      52 ..      49      96 ..      45     114 .. 0.84
   2 !   25.8   0.0     2e-08   1.4e-06     122     186 ..     164     229 ..     145     232 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.7e-10
   TIGR01166  5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld 52
                 +vlk+ln+++ rg++  l+GanGaGkstll+ l G        v + 
  MMETSP1174-20130828|3181_1 49 KDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVL 96
                589*******************************99765555555555 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2e-08
   TIGR01166 122 erpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilr.klreeGktvvisthd 186
                 e  +h++s G+++rv +   +    d+lllde t+ ld   ++ ll  l+ + +  G t+v +th 
  MMETSP1174-20130828|3181_1 164 EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQeETVTRGATIVYATHI 229
                 4568*************99998888****************999999886257899*********5 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.1   7.7e-18   5.4e-16       2     200 ..      32     228 ..      31     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 7.7e-18
   TIGR02982   2 ikirelnhyygkg.elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekel..vqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                 ++i++l+  y +  +  k vl+++n++++ g   +l G+ G+Gk tll ++gg   +   +++vlgk+  +    ++    +  + G+   a+  +  +  + ++r+ l++ +kl +++  ++ + l+e +g++   + + + +s+Gq++rv +  +l    +++l de t+ald    ++++  lq+ +  +g+ti+  th
  MMETSP1174-20130828|3181_1  32 VEIKDLDFSYESRrDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMtrAYMDTNWGMRTVAFAGYG-VPLQSDIRV-LDMMKKL-QSDFPERRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 899****99987516789***********************************99999999******966554444400445555665555554443.344555665.5666663.5667777788888888876..566789**********************************************************9 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   1.6   1.3e-17   9.2e-16      11     189 ..      47     232 ..      39     241 .. 0.72

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.3e-17
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdel...........aeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkeg.vellaellaaHlargGivllathqdlg 189
                 g + +l++l+++la G    + G nG+GK+tLLRil G   ++  +v++ +k+  +                 ++++++g+   l++++ +l+ +k +++++ + +   +  +e +g+   ++  ++++s Gq+rR+ l   ll    + +LDE ttalD+   ++ll+ l ++ ++rg +++ ath+  g
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNmtraymdtnwgMRTVAFAGYGVPLQSDIRVLDMMKKLQSDFPERR---DRLIEILGV--NTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVrQDLLMWLQEETVTRGATIVYATHIFDG 232
                 45789*********************************77777777887776654443222000000111113556666666666666666665555555555333...444444444..467889**********************************99857777888888899999999****8655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   1.1     1e-17   7.3e-16       8     190 ..      44     229 ..      38     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1e-17
   TIGR00968   8 krfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhya....lfkh..ltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd 190
                 +r G   +l+++++++  Gs   l+G  G+Gkstllr++ G +      +++ G+d+ r    +    ++  ++     +f    + ++ +i   l++ kk +    ++ ++l+e+++++   +     +s Gqr+rv l   l    ++lllde  +ald  vr++l  wl++       t v+ th 
  MMETSP1174-20130828|3181_1  44 RRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGmrtvAFAGygVPLQSDIR-VLDMMKKLQSDFPERRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHI 229
                 56688899*******************************99888888899******9875433333333333332000023320134455554.477778999999999999999998875..4445789**************9999*************************9988888999999995 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.6e-09   1.8e-07       3      66 ..      33     100 ..      31     115 .. 0.82
   2 !   25.0   0.0     4e-08   2.8e-06     106     196 ..     140     229 ..     131     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.6e-09
   TIGR02673   3 elekvskeya....agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedv 66 
                 e++++ ++y+    +  ++Lk++++++ +g+ + l+Ga GaGk+tll++l g++ +s  +v+v g+d 
  MMETSP1174-20130828|3181_1  33 EIKDLDFSYEsrrdGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDA 100
                 5566666666221123468999*******************************9999999****9986 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 4e-08
   TIGR02673 106 vrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllk.elnkrGttvivathd 196
                 + +k ++++ +r ++++e +g++   +   + +s G + Rv +   +++  ++ll De t  lD  + +++l  l+ e+ +rG+t++ ath 
  MMETSP1174-20130828|3181_1 140 MMKKLQSDFPERRDRLIEILGVNTEWR--MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQeETVTRGATIVYATHI 229
                 556667777888888888888887655..5689**********************************99988776516789**********6 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.3e-09   8.9e-08     465     518 ..      31      87 ..      18     102 .. 0.83
   2 !   24.2   0.1   2.8e-08     2e-06     603     660 ..     169     228 ..     160     234 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.3e-09
   TIGR03375 465 eielknvsfkYpeee...kaaLknvslkikpGekvaiiGriGsGKstllklllglye 518
                 ++e+k+++f+Y+ ++   k +Lkn++++++ G++  +iG +G+GKstll++l g   
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESRRdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHL 87 
                 5899*******7654222789******************************988654 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.8e-08
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtH 660
                  +S GQr+ v l   ll+  +illLDE t+alD    ++ll  L+e +   + T+v +tH
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVtrGATIVYATH 228
                 689*****************************************986554599******* PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-06   0.00013      16      61 ..      54      99 ..      44     107 .. 0.85
   2 !   33.3   0.0   1.1e-10   7.5e-09     128     199 ..     169     240 ..     156     254 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-06
   TIGR01277 16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkd 61
                ++++++++G r  ++G  GaGkstll ++ G       +++v +kd
  MMETSP1174-20130828|3181_1 54 NLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKD 99
                578999***********************99888777777777776 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.1e-10
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqv 199
                  +s Gqr+rv l   l+r+  illlde  +ald  +r+++l  +++ +  +  t++  th  + + +  +++
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFDGLDEWPTHI 240
                 5799********************************************************988776665555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.5e-08   1.1e-06      16     372 ..      47      86 ..       5     116 .. 0.69
   2 !   25.4   0.4   1.5e-08     1e-06     154     282 ..     162     295 ..     131     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.5e-08
   TIGR03719  16 pkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgke 372
                 + k +lk+++++   g++  ++G nGaGkstll+i+                                                                                                                                                                                                                                                                                                                              gk+
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRIL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGKH 86 
                 334555555555555555555555555555555555.............................................................................................................................................................................................................................................................................................................................5543 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.5e-08
   TIGR03719 154 eedakveklsGGekrrvalcrlllekPdlllldePtnhlda....esvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekee...aarkkalkkeleWvrsspkar 282
                 +++++++ +s G++rrv l   ll   d+lllde t  ld     + + Wl++       t+v  th    ld+    i  l    ++ ++g   +   +   rl+ e + +   +  +k l+ el   +++ ++r
  MMETSP1174-20130828|3181_1 162 NTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVvvrqDLLMWLQEETVTRGATIVYATHIFDGLDEWPTHIHYLHCEGSTRWQGKLEEN--EHYMRLRAEGHPSpilKVAEKWLRDELAVKKQNKETR 295
                 46788999********************************74443678999999999999*******999999999999999988889999976542..3334444444433111334455555555555554444 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   2.2e-15   1.5e-13      11     214 ..      47     261 ..      33     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 2.2e-15
   TIGR03740  11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr........ewtrkdlk.kiGsliesPalyenltarenlkvrtlllglpes...rieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiis.eGklkyekkidkdedl 214
                 + ++v++n+++++ + s   l+G nGaGkstll++l G    +  ++ + g+        ++tr  +  + G    + a y+ +  + +++v  ++++l+++   r + +++i+++++    + +  s G ++r+ + + ll+  ++l+lde t  ld +  q+l   ++    ++G t++ ++hi+  +++   hi  ++ eG  ++++k++++e+ 
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKdafrdlglNMTRAYMDtNWGMRTVAFAGYG-VPLQSDIRVLDMMKKLQSDfpeRRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQeETVTRGATIVYATHIFDGLDEWPTHIHYLHcEGSTRWQGKLEENEHY 261
                 56899*******************************9975555445555555001111114455444313344444444454.56688999999999998752226666777766654..5577889*************************************987665167799*********************988659**********99976 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.7e-09   1.2e-07       3      65 ..      33      99 ..      31     118 .. 0.79
   2 !   19.4   0.0   1.8e-06   0.00012     140     216 ..     164     240 ..     137     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.7e-09
   TIGR02315  3 evenlskvypng....kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegke 65
                e+++l+ +y++     k +lkn+n+++ +G    +iG  GaGkstllr + + + +s  s+ + gk+
  MMETSP1174-20130828|3181_1 33 EIKDLDFSYESRrdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKD 99
                67777777775422226789999**************************998777777777776666 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.8e-06
   TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadri 216
                 + r+  +s Gq+ Rv +   l++  +++l DE +++LD    + ++  l++ +  +g t++   H  d   ++ ++i
  MMETSP1174-20130828|3181_1 164 EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFDGLDEWPTHI 240
                 5689999**********************************************************998877777766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.6e-09   1.8e-07     478     527 ..      31      82 ..      21      94 .. 0.91
   2 !   20.2   0.0   4.7e-07   3.3e-05     617     672 ..     169     228 ..     160     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.6e-09
   TIGR00958 478 kveFqdVsFsYPsrpd..kpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                  ve +d  FsY sr d  k vlk+L+++l+ G+   l+G +G GKSt   +l
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESRRDgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRIL 82 
                 5999*********9875589***************************98776 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 4.7e-07
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveql....lqesksaksrtvlliah 672
                 ++s Gq+ r+ +   L+r   +L+LDe t ALD+ v q     lqe   +++ t++  +h
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDllmwLQEETVTRGATIVYATH 228
                 6799******************************66665111145556666666666665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   5.6e-10   3.9e-08     477     537 ..      31      94 ..       3     104 .. 0.83
   2 !   17.6   0.0   2.7e-06   0.00019     616     670 ..     170     228 ..     163     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 5.6e-10
   TIGR03796 477 kvelrnvtfgysale...apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                 +ve++++ f+y+      + ++++++++l  G+r  l+G+ G+Gkst+ +++ G +  +  +++
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESRRdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVR 94 
                 79*********9875233689********************************98876666555 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.7e-06
   TIGR03796 616 lsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaH 670
                 +s Gqr R+++   L +   iL+lDE+t+aLD  + + +   l++    Rg t++  +H
  MMETSP1174-20130828|3181_1 170 VSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEetvtRGATIVYATH 228
                 699********************************998766555322227777776666 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.1e-08   7.7e-07       6      76 ..      36     104 ..      31     124 .. 0.83
   2 !   21.1   0.0   5.3e-07   3.7e-05     143     207 ..     165     228 ..     137     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.1e-08
   TIGR02324   6 dlsktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdl 76 
                 dl  ++   +  G   +vlk+++++++ G    l+G+ GaGkstll+ l +++l+++ +++v  ++++ dl
  MMETSP1174-20130828|3181_1  36 DLDFSYESRRD-G-VKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDL 104
                 55555544444.4.468***************************************999999888887776 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.3e-07
   TIGR02324 143 WslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvve.likeakargaaligifh 207
                 W +     s G ++Rv +  +l+ +  iLLLde t++Ld   r+  +  l +e+ +rga+++   h
  MMETSP1174-20130828|3181_1 165 WRMH--MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMwLQEETVTRGATIVYATH 228
                 6665..6899*****************************999987665155667899999997777 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.2   9.3e-15   6.5e-13      14     202 ..      47     234 ..      32     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 9.3e-15
   TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsd..rtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathdenlve 202
                 + +  l+n+++++ +G+   l+G  GaGkstll+++ g + +s   +rv g+d   +rd  + + r  + + +    +        ++  +  l ++ +   +++er    +e +G++   +     +s G+++rv++   +++   +ll de t+ ld  + +d+l  l ee   +G t++ ath  + ++
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDA--FRDLGLNMTRAYMDTNWGMRTVAFAgyGVPLQSDIRVLDMMKKLQSDFPERRDRLIEILGVNTEWRM--HMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLqEETVTRGATIVYATHIFDGLD 234
                 56679**********************************9999999******96..666667777777776665554433310344677788899999999***************9876554..579*************************************877551678899*********776655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.3e-14   8.8e-13     333     530 ..      27     224 ..      17     230 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.3e-14
   TIGR02204 333 kvrgeiefeevkfayParpd..qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvd.lreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaead..efisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr.ttlv 530
                 +   ++e++++ f+y +r d  + +l++l++++  G +  l+G  GaGkstll++l   +  +  ++++ G d  r+l  +  r+ +      ++ +    +    yG p  sd +v +  k+ ++d  e   +l e    +   r  ++s Gq++r+ +   +l+   iLLLde t+aLd    q +   l+e    r +t+v
  MMETSP1174-20130828|3181_1  27 DQCPAVEIKDLDFSYESRRDgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDaFRDLGLNMTRAYMD-----TN-WGMRTVAFAGYGVPLQSDIRVLDMMKKLQSDfpERRDRLIEILGVNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRgATIV 224
                 5556899***********9955579*******************************87776666677777766234455444444443.....22.23333445579************999988653355666777666666779999********************************98888777766554443314555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.8e-08   2.7e-06       2      64 ..      37      99 ..      36     124 .. 0.86
   2 !   20.9   0.0   5.3e-07   3.7e-05     135     195 ..     167     228 ..     156     243 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.8e-08
   TIGR03873  2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad 64
                l  s  s r g + ++++++++   G+   l+G nG+Gkstllr+l G   ++  +v + g+d
  MMETSP1174-20130828|3181_1 37 LDFSYESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKD 99
                66677788999999*********************************9887777777776666 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 5.3e-07
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrel.aaegvtvvvalh 195
                 ++ +s G+r+rv+l   l +   +lllde t  ldv  + +ll  ++e  ++ g+t+v a h
  MMETSP1174-20130828|3181_1 167 MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEEtVTRGATIVYATH 228
                 7789***********************************99999988651678899999998 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     5e-14   3.5e-12      12     193 ..      46     231 ..      31     236 .. 0.75

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5e-14
   TIGR03522  12 ygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaal......yklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevi..keiakdktvilsthimq 193
                  g++++l+++ ++  +G+   ++G nGaGkstl++il g   +++ sv v g+d+ ++ l  + +  y+     +    +    + +++++       kl+     +r ++lie  G+++e   ++  +s G r+rv l   ll   ++l+lde tt ld     ++   +  +++++  t++++thi  
  MMETSP1174-20130828|3181_1  46 DGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRD-LGLNMTRAYMDTNWGMRTVAFAGYGVPLQSDIrvldmmKKLQ-SDFPERRDRLIEILGVNTEW--RMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLqeETVTRGATIVYATHIFD 231
                 478899999**********************************************987.445555567765555444444333344444430000003444.344578899******99986..6888********************************75433333333116789999*******976 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.9e-10   1.4e-08       5      68 ..      35      99 ..      31     119 .. 0.82
   2 !   11.8   0.0   0.00039     0.027     135     200 ..     163     228 ..     135     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.9e-10
   TIGR02211  5 enltksykegkl.eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGke 68
                ++l  sy++ +    +vlk++++++ +g    ++G+ G+Gkstll +lgg   ++  +v + Gk+
  MMETSP1174-20130828|3181_1 35 KDLDFSYESRRDgVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKD 99
                5666667655441468**********************************999988899999986 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00039
   TIGR02211 135 inkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvth 200
                  + +   +s G+r+rv +   l+   +++l de t+ ld    + ++  l+e   +++ +++ +th
  MMETSP1174-20130828|3181_1 163 TEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 45667789********************************************99999999999999 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   1.0   4.9e-13   3.4e-11      11     198 ..      43     233 ..      31     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 4.9e-13
   TIGR01288  11 sksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllv.fgryfglstreieevipslle..farleskadvrvadlsggmkrrltlaralindpqllildepttgldpharh..liwerlrsllargktilltthlmeea 198
                 s+  g k v+++l + +a+g    l+g ngagkst+ r++ g    +   + vlg++      l  ++  + +++      f+     l    r + +  +++++  p   +  +  l  +++ r+  +s g +rr+ l   l+   ++l+lde tt ld   r+  l+w +    ++rg ti+ +th+++  
  MMETSP1174-20130828|3181_1  43 SRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGMRTVAFAGYGVPLQsDIRVLDMM-KKLQSDFPERRDrlIEILGVNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQdlLMWLQ-EETVTRGATIVYATHIFDGL 233
                 455578899***********9999******************99999999*****99988888888887777777777777776554443034555553.456666666554223347788999*************************************99974355554.45789***********8765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05    0.0011      31      75 ..      42      86 ..      11     114 .. 0.78
   2 !   26.1   0.0   9.2e-09   6.4e-07     161     292 ..     164     298 ..     155     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.6e-05
   TIGR00955 31 larkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrs 75
                 +r+ + k +lkn    +  G    ++G+ GaGK+TLl +l  ++
  MMETSP1174-20130828|3181_1 42 ESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKH 86
                2345599*********************************98765 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 9.2e-09
   TIGR00955 161 pgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkk.laqkgktviltiHQPsselfelfdkiill.aeGrvvylGspeeavkff..selglpcPenynpadFvlkvlavepgseeesret 292
                 + r++ +S G+r+R+ l   ll    +L++DE T+ LD +  + ++  L++   ++g t++   H     l e  ++i  l  eG + ++G+ ee  +++  +  g+p P       ++ + lav+++++e+  e+
  MMETSP1174-20130828|3181_1 164 EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEeTVTRGATIVYATHIF-DGLDEWPTHIHYLhCEGSTRWQGKLEENEHYMrlRAEGHPSPILKVAEKWLRDELAVKKQNKETREES 298
                 567899*******************************************8637899*****999842.3455555688655268**********999997225778****9999999*******999888775443 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.8   3.2e-13   2.2e-11      12     193 ..      44     228 ..      31     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 3.2e-13
   TIGR03265  12 kefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditr.......lppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvth 193
                 ++ +   +lk++++++++g    l+G  G Gk+tLLri+ G   ++  ++ + g+d  r        +    ++G+   ++a +  + ++++i + L   k+ +++  er ++l+e++g+++  + +   +s Gq++rv L   l    ++LLLDe   aLD  vr+ L   l++     g t +  th
  MMETSP1174-20130828|3181_1  44 RRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRdlglnmtRAYMDTNWGMRTVAFAGY-GVPLQSDIRV-LDMMKKLQSDFPERRDRLIEILGVNTEWRMH--MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 45567789*********************************9999999999999986542111111233456789888888777.4678888887.666666788999999*********9988876..69**************************************98888877777777777777 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.5e-08     1e-06     451     501 ..      31      84 ..      27     110 .. 0.86
   2 !   14.5   0.0   2.9e-05     0.002     588     638 ..     169     219 ..     164     228 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.5e-08
   TIGR03797 451 aievdrvtFrYek..dg.plvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                 a+e++ + F Ye+  dg + vL++++++   G    ++Ga G+GKStllr+L g
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESrrDGvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGG 84 
                 6899*******752254368*******************************965 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.9e-05
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR 638
                  +S GQr R+ +   l r   ill+DE T ALD    +     l++  vtR
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTR 219
                 589******************************988877777777777777 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.6e-07   1.1e-05       6      61 ..      42      97 ..      37     110 .. 0.83
   2 !   17.6   0.0   5.4e-06   0.00037     128     207 ..     153     230 ..     132     258 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.6e-07
   TIGR03005  6 vtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikveg 61
                 ++r g   vl++l++++a+G +  liG  G+Gkst+lril      ++ s++v g
  MMETSP1174-20130828|3181_1 42 ESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLG 97
                567888889*******************************9877666666666655 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 5.4e-06
   TIGR03005 128 velldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthem 207
                  +l++++G+          +s Gq++rv +   l     +ll+devt+ald  + +++l  l++ +  +  t++  th +
  MMETSP1174-20130828|3181_1 153 DRLIEILGVNTEWRM--HMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIF 230
                 556667776654433..35799*********99976669********************999999999999999999965 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0     5e-13   3.5e-11      19     203 ..      50     232 ..      32     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 5e-13
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarr..qigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdv 203
                 + l+n+++ + +g  + +iga gagkstl+r +      +  +v v gkd  +    ++++a    + gm    f        ++     l++ ++ + +  ++ + l+ ++g++         +s gq++rv +   l     +ll de t+ald    q +l  l+e   + g ti+  th +d 
  MMETSP1174-20130828|3181_1  50 DVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMdtNWGMRTVAFAGY--GVPLQSDIRVLDMMKKLQSDFPERRDRLIEILGVNTEW--RMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFDG 232
                 579*****************************9988888888999****98877666777665411556655555443..34444445568888999999999999*****9997654..45679**********************************************************8875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   1.0   1.6e-12   1.1e-10       3     191 ..      46     231 ..      44     235 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.6e-12
   TIGR01186   3 tGlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediae.isdaelrevrrkkiamviqkialfPhmt.ildnislglellk..ideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdld 191
                  G k  +++++++++ G    +iG  G+Gkstl+r+l      +   + + G+d    +  +  r       +m  + +a+  +   ++ +i +   ++k   d  er+++  e l   ++  e++    + +s G+++rv l   l    d+ll+de  +ald ++r++l   l++   +   tiv+ th +d
  MMETSP1174-20130828|3181_1  46 DGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRdLGLNMTRAYMDTNWGM--RTVAFAGYGVpLQSDIRVLDMMKKlqSDFPERRDRLIEIL---GVnTEWR---MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFD 231
                 57888899*****************************8776666667777787755403333344444445555..4555544443145555543333330034457777776666...4423443...5789**************************************999999999***********876 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   6.3e-13   4.4e-11       1     176 [.      52     231 ..      52     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6.3e-13
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitep.gpd..rmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvg.lreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 lk++++++ +g    lig  g gkstll ++ g +  +  +v++ gk+  +  g +  r  +  n+ +     +   + l  d  + d+ k+ + +  e +  l++ l   ++ r++ +s g ++rv +  +l    ++lllde   ald + r++l   l + +  + +t++  th  d
  MMETSP1174-20130828|3181_1  52 LKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDlGLNmtRAYMDTNWGMRTVAFAGYGVPLQSDIRVLDMMKKLQSDFPERRDRLIEiLGVNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFD 231
                 799********************************************9765425442255666788888888888999*****99999999999999998888887245667899******************87779****************99988888888888999999999766 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.1e-12   7.6e-11     468     661 ..      26     216 ..       3     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.1e-12
   TIGR01193 468 enlngdievndvsysyGyg....sevledislkikknekitlvGlsGsGkstlakllvkff.qaesGeillngkslkdidkhelrqliny.lPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdkt 661
                 e +   +e++d+++sy       ++vl+++++++ + ++  l+G  G+Gkstl ++l + +  + +    l++  ++d+  ++ r +++       + f+G     + l++  +v + + k   ++ e +d + ++ lG +te       +s Gq++r+ l   ll + ++l+lde+t+ ld+++ + ++  l   ++ t
  MMETSP1174-20130828|3181_1  26 EDQCPAVEIKDLDFSYESRrdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHlTSGDSVRVLGKDAFRDLGLNMTRAYMDTnWGMRTVAFAGYG---VPLQSDIRVLDMMKKLQSDFPERRDRLIEI-LGVNTEWR--MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWL---QEET 216
                 45556789999999998751122579999****************************987724444555689999**********999641567889999974...558888887766666677899998887765.899**998..5689**********************************99875444...3333 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1     2e-12   1.4e-10      13     228 ..      46     257 ..      31     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2e-12
   TIGR03411  13 dgfk.alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke..lakersvvvvehDmefvrelaekvtvlh.eGkvlaeGslde 228
                 dg+k  l++l++++++g+  ++iG+nGaGk+tll ++ Gk  ++  sv + gkd  +    +++r+ +  ++       +   +    + l++d +vl+++ ++l+++  er ++++e++g+++  +++  ++s Gq+ ++++ + l++  ++lllDe ++ +    ++    +l+e  +++  ++v   h  + ++e  +++  lh eG++  +G+l+e
  MMETSP1174-20130828|3181_1  46 DGVKdVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGM-----RTVAFAGYGVPLQSDIRVLDMM-KKLQSDFPERRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEetVTRGATIVYATHIFDGLDEWPTHIHYLHcEGSTRWQGKLEE 257
                 566525799*******************************9988889999998887777666665555444444.....4446788899999*****9988.89999999999*****988865..567789********************************99999999999753378888999999999999999999999986899999999987 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.1e-07   2.2e-05       2      65 ..      32     101 ..      31     121 .. 0.74
   2 !   16.1   0.0   1.6e-05    0.0011     144     203 ..     169     230 ..     155     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.1e-07
   TIGR00972   2 levknlklfyge.....kealkdvnleikknkvtaliGpsGcGkstllrsln.rlndlveevrieGkvll 65 
                 +e+k+l+++y +     k +lk++n+++ + +   liG  G+Gkstllr l  +     ++vr+ Gk  +
  MMETSP1174-20130828|3181_1  32 VEIKDLDFSYESrrdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGgKHLTSGDSVRVLGKDAF 101
                 56777777775422222679*****************************995234445566666666555 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.6e-05
   TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe..Lkkkytivivthnm 203
                  +s Gq++r+ +  +l    ++lLlDe t aLD +  + +   +qe  + +  tiv  th +
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEetVTRGATIVYATHIF 230
                 6799************9999******************999999873345569999999966 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06   0.00024     455     504 ..      31      83 ..      17     110 .. 0.80
   2 !   18.8   0.0   1.3e-06   8.9e-05     593     653 ..     169     231 ..     159     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.5e-06
   TIGR01846 455 aiefenirfryke...dspevlsnlsldikaGeviGivGpsGsGkstltkllq 504
                 a+e++++ f y+       +vl+nl+++++ G    ++G  G+Gkstl ++l 
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESrrdGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILG 83 
                 688999999997511135789****************************9985 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.3e-06
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimr..nlreickgrtviiiahrls 653
                  +s Gqr+r+ l   l+    il+lde t+ald    + +    + + +++g t++  +h ++
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMwlQEETVTRGATIVYATHIFD 231
                 6899*****************************98776555501556799******9999765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.5   3.7e-11   2.5e-09     331     504 ..      31     203 ..      22     229 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 3.7e-11
   TIGR02203 331 kvefrnvtfrypgdd...realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei.llDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaa..ylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                  ve+++++f y+++    +++l++++++++ G +  l+G  G+Gkstl+++l     ++  ++ +l  ++ +dl L+  R+ +            t+a   +Yg   + ++ +v + +++      +  d+l e l  +   +   +s GqR R+ +   ll+   iL+LDe t+aLD  
  MMETSP1174-20130828|3181_1  31 AVEIKDLDFSYESRRdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVrVLGKDAFRDLGLNMTRAYMDT-----NWGMRTVA-FAGYGVPLQ-SDIRVLDMMKKLqsDFPERRDRLIEILGVNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVV 203
                 5899*******8875333689*******************************8654444444427888899*****999988753.....22334444.457888733.34455555443200223334444444444445556789*******************************75 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-08   1.6e-06     329     381 ..      47      99 ..      29     104 .. 0.88
   2 !   10.6   0.0   0.00044      0.03     455     512 ..     170     228 ..     163     242 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.2e-08
   TIGR01842 329 ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgad 381
                 + k++lk+++++l  G+   +iG+ g+Gks+L r+l G  l++  svr+ g d
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKD 99 
                 55799**********************************99999999987665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00044
   TIGR01842 455 LsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvith 512
                 +s Gqr R+ L   l +   +++LDe  + LD    q l+  l+e    r++t+v  th
  MMETSP1174-20130828|3181_1 170 VSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEeTVTRGATIVYATH 228
                 799**********************************9999998714567788888887 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   1.6   7.5e-11   5.2e-09      20     210 ..      45     229 ..      32     247 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 7.5e-11
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlak.ldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltslde..serkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd 210
                 + + k vl+n++++l +G    l+G  GaGkstl r+l G    +  +v+  G+d  + l  + ++a+  +   +   + +        +  ++  +r l  +++  s+  +r  +l+e++++++e      + +s Gq +r+ +   l     +++lde  + ld+v +  +l  l++     G ++++ th 
  MMETSP1174-20130828|3181_1  45 RDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRdLGLNMTRAYMDTNWGMRTVAFA------GYGVPLQSDIRVLDMMKKlqSDFPERRDRLIEILGVNTEWR---MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHI 229
                 567899******************************998877666667888888765414444445443322211111221......22333444444444444311445577788889999988764...5679**************99999**************************************95 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.6     5e-11   3.4e-09      16     218 ..      55     257 ..      45     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5e-11
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldge......vlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle.dGrvkaagklee 218
                 ++++l    ++ l G+ G+Gk++l+r++ G   ++   + + g+       l+ +r+ +++    R v++      L + + v + ++    +++      + +++ie+Lg++   e + + +s G + Rv +   lL   ++Ll+De  +aLD   ++++l +L++ +      i+y  H +d +     ++  l+ +G  + +gklee
  MMETSP1174-20130828|3181_1  55 LNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKdafrdlGLNMTRAYMDTNWGMRTVAFAGYGVPLQSDIRVLDMMKK--LQSDFP---ERRDRLIEILGVNT--EWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHIFDGLDEWPTHIHYLHcEGSTRWQGKLEE 257
                 455555557899******************76666666655543111111456667777777777777777777777777777655442..233333...358*********97..677899**********************************************9999*********99988887777765543666666666665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.1e-09   1.5e-07       2      51 ..      33      87 ..      32     111 .. 0.85
   2 ?    5.5   0.0      0.03       2.1     146     202 ..     171     228 ..     130     261 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.1e-09
   TIGR01978  2 kikdlhvsved.....keiLkglnlevkkGevhaimGpnGsGkstLskvlaghek 51
                +ikdl  s e      k++Lk+ln+++ +G    ++G+nG+GkstL ++l g++ 
  MMETSP1174-20130828|3181_1 33 EIKDLDFSYESrrdgvKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHL 87
                577777777766666689********************************99874 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.03
   TIGR01978 146 sGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnklree.ekalliith 202
                 s G ++r +++ l ll+P ++ +LDe+   lDv   + +   +++   +   +++  th
  MMETSP1174-20130828|3181_1 171 SDGQRRRVQLF-LGLLRPfDILLLDEVTTALDVVVRQDLLMWLQEETVTrGATIVYATH 228
                 77899999876.778888689***********977666666666544441333333455 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.6   2.8e-10     2e-08       6     198 ..      29     228 ..      25     234 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.8e-10
   TIGR03258   6 tsGvvleslrvaygar.....vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyal....fphlkv..eenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvth 198
                 +  v +++l  +y++r      vl++l +++  G    l+G  G+Gk+tllr++ G   ++G  + v ++d           a +  n+ +    f    v  + ++   l   k+ +++  er    + +++++  ++   + +s Gq++rv l   l    d+lllde  +ald  +r+++   l+         t++y th
  MMETSP1174-20130828|3181_1  29 CPAVEIKDLDFSYESRrdgvkDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGMrtvaFAGYGVplQSDI-RVLDMMKKLQSDFPERRDRLIEILGVN--TEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEET-VTRGATIVYATH 228
                 6677777887777664222226****************************************999998888766555555555555555431111222222102222.235556667778888887777776654..5566799**************99888******************9987766432.334578888888 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   2.8     2e-10   1.4e-08      41     226 ..      53     231 ..      43     240 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2e-10
   TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvgl.aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkkl...kktivfvshdld 226
                 ++ ++++++G  ++l+G  G+Gks+llr + g    s  +v+v  +d   d+    +++  +      ++ f  +++ P ++   ++ + l++    + +  +r ++ +e++g+ +eW+   ++ +s G ++rv l   +    dill+de  +ald ++r+   d l+ lq++      tiv+ +h +d
  MMETSP1174-20130828|3181_1  53 KNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGMRTVAFAGYGV-PLQS---DIRV-LDMMKKLQSDFPERRDRLIEILGVnTEWR---MHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQ---DLLMWLQEETvtrGATIVYATHIFD 231
                 6789999*************************************999999987776666666666666677888885.6544...4433.66666667777777777888888725786...577899*********************************6...5577777653111569999999655 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2    0.0017      0.12       1      27 [.      67      93 ..      67     105 .. 0.79
   2 !   26.3   0.2   1.1e-08   7.7e-07      93     159 ..     162     228 ..     135     232 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0017
   TIGR01187  1 lLGpsGsGkttlLrllaGleeldsGki 27
                l+G+ G+Gk+tlLr+l G +  +  ++
  MMETSP1174-20130828|3181_1 67 LIGANGAGKSTLLRILGGKHLTSGDSV 93
                78**************99665554444 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.1e-08
   TIGR01187  93 fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvth 159
                  ++ +++ +s Gqr+rv l   +    +iLLlDe  +aLD  +r+ + + l++     G t+v+ th
  MMETSP1174-20130828|3181_1 162 NTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 45678999***************************************99999999999********9 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.1e-10   2.9e-08      11     191 ..      47     229 ..      32     260 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.1e-10
   TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGre.ifpkltv..eenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqv 191
                 g   vl+++++++++g+   ++G ng+Gk+tll+ l g + ++  ++++ g+d  +    +  +a +      r+  f+   v  + +++ +l+++kk +++ pe+   l  +l   ++ r   +s Gq+  + +   L+    +llLDe t  +   + +++   ++e + +++ +i+   + 
  MMETSP1174-20130828|3181_1  47 GVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWGMRTvAFAGYGVplQSDIR-VLDMMKKLQSDFPERRDRLIEILGVNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATHI 229
                 4468************************************999999*9999986665544444433332222222123333331134444.3556666677888888888888888888899999**********99***999*******9999998888888888888777777777766555 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   1.6   5.3e-10   3.7e-08       3     171 ..      59     228 ..      57     235 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5.3e-10
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhef..awdf...pidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlps.qellvelfeelagegtailmtth 171
                 + +G    l+G nGaGk+tllr + g   ++  sv+v gk   +++r++G    r  +   w         +++ l+   + + ++++  ++df   +d l ++     ++  +  +s Gqr+rv +   l     +lllde  t ld+   q+ll+ l ee  + g +i+ +th
  MMETSP1174-20130828|3181_1  59 LARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGK---DAFRDLGLNMTRAYMdtNWGMrtvAFAGYGVPLQSDIRVLDMMKK-LQSDFPERRDRLIEILG-VNTEWRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVrQDLLMWLQEETVTRGATIVYATH 228
                 567888889*************888888877889*****7...889999999999765114544111233456678888888877765.6789*999999988744.4456668899**************9999*************976266777788889999********9 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0015       0.1       3      36 ..      53      82 ..      51     116 .. 0.75
   2 !   20.5   0.0   7.7e-07   5.3e-05     124     184 ..     168     228 ..     161     243 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0015
   TIGR02770  3 qdvnlslkrgkvlalvGesGsGksltalailgll 36
                +++n++l rg  + l+G+ G+Gks+     l +l
  MMETSP1174-20130828|3181_1 53 KNLNMNLARGSRCLLIGANGAGKSTL----LRIL 82
                799********************963....3333 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 7.7e-07
   TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillith 184
                 +++s G   Rv + l ll    +l+ De tt+lDvvv+  +L  l+e + +rg +i++ th
  MMETSP1174-20130828|3181_1 168 HMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 7899999*****************************************************9 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     9e-06   0.00062     280     344 ..      32      95 ..      11     122 .. 0.63
   2 !   11.0   0.0   0.00034     0.023     426     469 ..     168     211 ..     137     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9e-06
   TIGR03269 280 ikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevr 344
                 + +kd++  y s   Gv   + n+++++ ++    l+G  GaGk+tl +il G  + tsG+ +  
  MMETSP1174-20130828|3181_1  32 VEIKDLDFSYESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGK-HLTSGDSVRV 95 
                 556666666666666666666666666666666666666666666666665543.3333333333 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00034
   TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaes 469
                 + +s+G+r rv l   l++   i++lde t ++d + ++++   
  MMETSP1174-20130828|3181_1 168 HMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMW 211
                 6789******************************9999887655 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.4e-08   3.8e-06     468     501 ..      51      84 ..      45     121 .. 0.88
   2 ?    1.4   0.0      0.25        18     579     632 ..     164     218 ..     132     252 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.4e-08
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 ++++L++++  G+  L+iG nG GKs l Rilg+
  MMETSP1174-20130828|3181_1  51 VLKNLNMNLARGSRCLLIGANGAGKSTLLRILGG 84 
                 6789*****************************8 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.25
   TIGR00954 579 dW.kdvLsgGekqRiamARlfyHkP.kfavLDEctsAvsvdvEdklyelakevgit 632
                 +W + ++s G++ R+ +   +  +P    +LDE t A+ v v + l   ++e  +t
  MMETSP1174-20130828|3181_1 164 EWrMHMVSDGQRRRVQLFLGLL-RPfDILLLDEVTTALDVVVRQDLLMWLQEETVT 218
                 5645677888888888764444.55267789***********99998888876654 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.8e-06    0.0002     333     391 ..      28      86 ..       7     112 .. 0.84
   2 !    6.9   0.0    0.0062      0.43     469     528 ..     169     228 ..     153     233 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.8e-06
   TIGR01194 333 svdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGly 391
                    ++e+kd+ +sy++ +      l  +++++a+G    ++G nG Gkstl+++l G +
  MMETSP1174-20130828|3181_1  28 QCPAVEIKDLDFSYESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKH 86 
                 56689************999999*******************************98755 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0062
   TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvish 528
                  +s Gqr+r+ l    l    +lllde ++  d   ++ +   l  +   rG ti+  +h
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGATIVYATH 228
                 5799*********************************9999999999999****999998 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.5e-07   1.1e-05     333     505 ..      30     203 ..      18     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-07
   TIGR01192 333 gavefrdisfefanssqgvrdv....sfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlk..gydtlvge.rgnrlsggerqrlaiarailknapilvldeatsaldve 505
                  ave++d+ f +   ++gv+dv     ++   g    ++g  gagk+tl+ +l   +  +   + + g d      + l   ++  + d+    r++      g    +d  v++  k    sdf e r +  + + +  e r   +s g+r+r+ +   +l+   il+lde t+aldv 
  MMETSP1174-20130828|3181_1  30 PAVEIKDLDFSYESRRDGVKDVlknlNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAF----RDLGLNMTRAYMDTNWGMRTVAF-AGYGVPLQSDIRVLDMMKKL-QSDFPERRDRliEILGVNTEwRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVV 203
                 589****************9983333566778999****************998666555555555555532....33445677788888888888864.56788889999999988865.68998866541144444445488899*******************************95 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   7.7e-06     438     588 ..      48     209 ..      36     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.1e-07
   TIGR01271 438 vtpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdni.ifglsydeyr..ytsvikacqleedi.allaekdktvlgeggit.......lsggqrarislaravykdadlylldspfsyldvvtekeif 588
                 v  vlkn++++l +g    + g+ g+gks+ll ++ g+   s   ++  g+ +f      +    +  n  +  +++  y    +s i+  ++ + + + ++e+ +  +   g+        +s gqr r+ l   + +  d+ lld   + ldvv  ++++
  MMETSP1174-20130828|3181_1  48 VKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLGLNMTRAYMDTNWgMRTVAFAGYGvpLQSDIRVLDMMKKLqSDFPERRDRLIEILGVNtewrmhmVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLL 209
                 568******************************99999999*99**********8765555555555564366788888862268999999988887367999766555444442233333379********************************999876 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-06   0.00057      13      51 ..      47      86 ..      41      93 .. 0.87
   2 ?    3.7   0.0     0.053       3.7     403     457 ..     169     224 ..     147     234 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.2e-06
   TIGR02633 13 gvk.aldnidlklraGeivslcGenGaGkstlmkvlsgvy 51
                gvk  l+n++++l  G    l G nGaGkstl+++l g +
  MMETSP1174-20130828|3181_1 47 GVKdVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKH 86
                5552689*****************************9865 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.053
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyk.linqlaqeGvaii 457
                  +s G++++  l   ll    +l+lde t  +dv  + ++   l ++ + +G +i+
  MMETSP1174-20130828|3181_1 169 MVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMwLQEETVTRGATIV 224
                 45666666666666666666788888888888888887765414445666666655 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.7   1.8e-06   0.00013      22     198 ..      56     229 ..      30     232 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.8e-06
   TIGR02323  22 sf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivthl 198
                 ++ l  G    ++G  G+Gkstll  l ++ l++  +v+   ++ +++l        r  + t+wG+ +   +G  + + +   + + +  + +  + ++r+    +  v+ +    + +  s G ++r+q+   l+    ++++ e t  l v v+  ll  l++  +  g +++  th+
  MMETSP1174-20130828|3181_1  56 NMnLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDLG---LNMTRAYMDTNWGMRTVAFAGYGVPLQSDIRVLDMMKKL-QSDFPERRDRLIEILGVNTEW---RMHMVSDGQRRRVQLFLGLLRPFDILLLdEVTTALdVVVRQDLLmWLQEETVTRGATIVYATHI 229
                 4446667777899*********************9*******99888874...4556789********999999988887777776644444.667777776655444455444...66889***********999987777777899999998888888755555555578888888886 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.7e-05    0.0053     758     812 ..      30      85 ..       2      97 .. 0.70
   2 ?    3.5   0.0     0.031       2.2     210     261 ..     170     221 ..     166     261 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.7e-05
   TIGR00956 758 eifewrdltyevkikke.krvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                    e++dl +  + + +  + +L++++  +  G+   L+Ga GAGk tLl +L ++
  MMETSP1174-20130828|3181_1  30 PAVEIKDLDFSYESRRDgVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGK 85 
                 44567888777776655267899999999999999999999999999999999876 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.031
   TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilka 261
                 vs G+r+Rv +   l+ +  i+++D++t+ LD     +++  l++ +    a
  MMETSP1174-20130828|3181_1 170 VSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQEETVTRGA 221
                 8999*******9999***************9998888888888776655544 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.5   1.7e-05    0.0012    1285    1456 ..      32     204 ..       6     233 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
   TIGR00957 1285 vefrnyslry...redldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggen.......lsvgqrqlvclarallrktkilvldeataavdlet 1456
                  ve+++  + y   r+++  vl++ln+++  g +  ++g  gagks+l   l     ++   +++ g    k  + dl  ++t    d     g   + +  ++   + ++ +   l  +k++ s  p++ d      g n       +s gqr+ v l   llr   il+lde t+a+d+  
  MMETSP1174-20130828|3181_1   32 VEIKDLDFSYesrRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLG----KDAFRDLGLNMTRAYMDTNW--GMRTVAFAGYGVPLQSDIRV---LDMMKKLQSDFPERRDRLIEILGVNtewrmhmVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVV 204 
                  55555544443336788999*************************875544444444444455544....44455566666655555432..33333334444444555544...44455555555555554433333322222222899****************************9754 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.4e-05    0.0023     944    1124 ..      50     234 ..      13     245 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.4e-05
   TIGR01257  944 pavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietn..ldavrqslgmc.pqhnilfhhltv..aehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlll..kyrsgrtiimsthhmdead 1124
                    +  ln+ +       ++g ngagk+t l il g    +  +v v gkd   +  l++ r  +        + f    v     i +   +k + + +     + ++e  g+        + +s g +r++ + + ++    +++lde t+ +d   r+ +   l       g ti+ +th +d  d
  MMETSP1174-20130828|3181_1   50 DVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLGKDAFRDlgLNMTRAYMDTNwGMRTVAFAGYGVplQSDIRVLDMMK-KLQSDFPERRDRLIEILGVNTE--WRMHMVSDGQRRRVQLFLGLLRPFDILLLDEVTTALDVVVRQDLLMWLQeeTVTRGATIVYATHIFDGLD 234 
                  344567778888888888888999999888888888777677788888887555114555555543313455666655551134444444443.4455555566777777777654..3456678888888888888888888888888888888888887655444114556778888888877655 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014    0.0094      14      69 ..      42      97 ..      36     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
   TIGR00750 14 eneepeakellkrilpktGrahvvGltGvPGaGkstlveklieelrrrGlkvavia 69
                e+++   k++lk++  +  r  +  l G  GaGkstl+  l+ +    G  v v+ 
  MMETSP1174-20130828|3181_1 42 ESRRDGVKDVLKNLNMNLARGSRCLLIGANGAGKSTLLRILGGKHLTSGDSVRVLG 97
                677778999**********************************99999*9999986 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.052       3.6      25      43 ..      63      82 ..      51      98 .. 0.73
   2 !    7.2   0.0    0.0072       0.5     305     337 ..     190     222 ..     146     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.052
   TIGR00611 25 vn.vlvGeNgqGKtnlleai 43
                   +l+G Ng GK  ll+ +
  MMETSP1174-20130828|3181_1 63 SRcLLIGANGAGKSTLLRIL 82
                44389*********999865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0072
   TIGR00611 305 illlDDvaseLDeqrreaLaelleekgeqvfvt 337
                 illlD v   LD   r++L+  l+e+ +    t
  MMETSP1174-20130828|3181_1 190 ILLLDEVTTALDVVVRQDLLMWLQEETVTRGAT 222
                 9********************999994443334 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0015      0.11       5      27 ..      64      86 ..      60     103 .. 0.85
   2 ?   -1.6   0.0       6.3   4.4e+02     113     144 ..     271     303 ..     254     314 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0015
   TIGR00231  5 kivivGhvdvGKstLlnsllknk 27
                +++++G  ++GKstLl  l +++
  MMETSP1174-20130828|3181_1 64 RCLLIGANGAGKSTLLRILGGKH 86
                799*************9887766 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 6.3
   TIGR00231 113 vpiilvvnKiDlkd.dlktkvkslfaklnaepi 144
                 +pi+ v+ K+   + ++k++ k+ ++++++e +
  MMETSP1174-20130828|3181_1 271 SPILKVAEKWLRDElAVKKQNKETREESSGEVA 303
                 566667777744447788888888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      273  (0.0665529); expected 82.0 (0.02)
Passed Vit filter:                       106  (0.0258411); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.19u 0.22s 00:00:01.41 Elapsed: 00:00:01.27
# Mc/sec: 342.96
//
Query:       MMETSP1174-20130828|3182_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-225  746.5   7.8     5e-225  746.2   5.4    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   4.3e-173  574.8   3.5   5.3e-173  574.5   2.4    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    2.1e-13   47.9   0.3    8.5e-13   45.9   0.0    2.0  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    3.3e-11   41.0   0.1    1.2e-09   35.9   0.1    2.6  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    3.4e-05   20.4   0.0      8e-05   19.2   0.0    1.6  2  TIGR01312 XylB: xylulokinase
    0.00012   19.2   1.7      0.045   10.6   0.0    3.2  3  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  746.2   5.4  7.3e-228    5e-225       3     590 ..       9     609 ..       7     614 .. 0.94

  Alignments for each domain:
  == domain 1    score: 746.2 bits;  conditional E-value: 7.3e-228
   TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.....evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge.....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag..dkleeeekekiekaveelkealkeedveek..ikakteelekalekl 590
                 +GidLGtt s+v v++ ++ ++ian +G+rttPs+vaf+++ erl+G++ak+q+ +n+ nt++ +krliGr+++   v++++k+ p++v +        ev+++ e+k+++pee+s+++L k+k+ aeay+G++v++av+tvPayfnd+qrqatkdaG+iaGl+vlriinePtaaa+ayGldk+ +++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd++++d++++efk++   d++ ++ al+rl+ a e+ak  Ls+++++++++  +       ++++ ++tra+fe++ +d +++++epv+k+l+d+k+s++ ++ev+lvGGstriP+vq ++ +++g kep ks+nPde+va Ga +q+++l+g+     ++d+lLldvtPLsLg+et Ggv+t+li+rntt+P+kksq+fst +dnqp v i+v+ Ger++++d + lg+f+L+gipp+PrG+pqievtfdidanGil+v+a +k+tgkeq+itit+ ++ ls eeiermv eae++++ed+ ++ ++ea+n+++++ y++++t+++++   kl++ +ke+i+ ++ee  + l+ ++++ek   +ak++ele  ++ +
  MMETSP1174-20130828|3182_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRNFSddAVKSDMKHWPFTVKSGPAgkpiiEVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLQEFKRKFKKDMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSLFE----GIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKVSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAFGATVQAAILSGQdqsekLQDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAVEKSTGKEQKITITNdKGRLSAEEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTVEDEKlaSKLSDGDKESITGKIEETIQWLDANQTAEKeeYEAKQKELEAIVNPI 609
                 8**************************************99.******************************9865799**********9876542323455556689**********************************************************************************************************************************************************************9999887653....47899************************************************************98*************************977788899******************************************************************************************************************972578********************************************9986336899************9999988877766334777777777766665 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  574.5   2.4  7.7e-176  5.3e-173       2     565 ..       9     591 ..       8     612 .. 0.89

  Alignments for each domain:
  == domain 1    score: 574.5 bits;  conditional E-value: 7.7e-176
   TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgem....vrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklilkkagle....aelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke...dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadk..dLlseeelkaikaaleklekaleeddaea 565
                 vGiDlGtt+s v + +++++e++ +++g+ + ps v ++e  +  +G++ak+++a + +nt+  +kRl+Gr  +d  vk+ +++ p+++++++ +     v+++ ++++ +P evs+ +L k+k+ ae  +gk++k+av+tvPAYF+d qrqatkdA+ +aglnvlR++nePtaAA+AYGldk   e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD+++++++l++ + +     + ++   + l +a ++ak++L++++++++e+    eg d++ +++r+++e++  ++ +k +e+v+++lrd++++++ ++evvlvGGstr+p+v+ +++++F+ kep ++++Pde vA GA++qa +L++++++e   dllLlDv+PLsLGlet GG++  +i Rntt+P++k+q F ty D+q ++ i+v  GeR + +dc  L++F+L gippm+ G+ +i+vtf++Da+G+l+v+a ek+tg+e+ki++ +  g Ls eeie+m+ ++ ++ +eD ++R++ e+k   e+   +++++++++k    ls  ++++i+ ++e+  + l+ +++++
  MMETSP1174-20130828|3182_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRNFSDdaVKSDMKHWPFTVKSGPAGKpiieVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKkGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLQEFKRKfkkdMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSlfEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKVSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAFGATVQAAILSGQDQSEklqDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAVEKSTGKEQKITITNDKGrLSAEEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTVEDEKlaSKLSDGDKESITGKIEETIQWLDANQTAE 591
                 8**************************************99.99***************************76543499999*******9988776111145555666889***********************************************************************977999*************************************************7666552111344555566666777889*****9999988886446******************************************************************6489***********************88776546689****************************************************************************************************************987644************************************9999999876542245777777777777766655554444332 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3     2e+02       4      20 ..       8      24 ..       6      85 .. 0.60
   2 !   45.9   0.0   1.2e-15   8.5e-13     100     304 ..     144     356 ..     120     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
   TIGR00904  4 dlgidlGtantlvyvkg 20
                 +gidlGt+   v v +
  MMETSP1174-20130828|3182_1  8 SVGIDLGTTYSCVGVWQ 24
                68999999988764433 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 1.2e-15
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveep.tgsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyi....rrky.nlliGerta.ekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsket 304
                 + +++vP+   + +r+a k++ + aG +   +i+ep aaai  +l  +   +  ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ ++++     +rk+ + + G++ a  ++++    a+ +  + +++  ++   l +G+  + +++  +  +   +  ++ +e v+++l +++   +++ v + +vl GG + +  ++ +ls+  
  MMETSP1174-20130828|3182_1 144 NAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKKGDeKNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVDHFlqefKRKFkKDMKGNQRAlRRLRTACERAKRTL-SASTQAHLEIDSLFEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKV--SKNAV-HEVVLVGGSTRIPKVQGMLSDFF 356
                 379******************************************998651566899************994599776662233689*******999876222245552458999888356788777777764.45555566667899*********************************98875..45555.46999999999999998888754 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.7e-12   1.2e-09      43     143 ..     124     230 ..     120     265 .. 0.88
   2 ?    2.0   0.0     0.039        27     186     218 ..     324     356 ..     290     372 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.7e-12
   TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql......kngavvdvGGGttGisilkkGkviysadeatGGthl 143
                 + ++ ++k+ +e  +G ++++a ++vP   ++++ +++ +    aGl+vl++++ePtaaa +  l      kn  + d+GGGt  +s+l   + i+    ++G thl
  MMETSP1174-20130828|3182_1 124 SMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLdkkgdeKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 230
                 5677899*************************9999***********************999888333322356789********************9999999998 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.039
   TIGR02529 186 vkkhiekqkvkdlylvGGassfsefedvfekel 218
                   + + k+ v+++ lvGG++ +++++ +++  +
  MMETSP1174-20130828|3182_1 324 RDSKVSKNAVHEVVLVGGSTRIPKVQGMLSDFF 356
                 345688999************999998887666 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.81   5.5e+02       1      26 [.       9      35 ..       9      41 .. 0.69
   2 !   19.2   0.0   1.2e-07     8e-05     381     449 ..     321     392 ..     283     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.81
   TIGR01312  1 lGiDlgTs.svKallvdekgeviasgs 26
                +GiDlgT+ s+  +  +++ e+ia+ +
  MMETSP1174-20130828|3182_1  9 VGIDLGTTySCVGVWQNDRVEIIANDQ 35
                7*****982444455558888888766 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.2e-07
   TIGR01312 381 dilkelk..glkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialgekdlveecs 449
                 ++l++ k     ++e++l+GG ++ + ++ +l d +g +  +++   +e++a+Ga ++Aai +g+ d+ e+++
  MMETSP1174-20130828|3182_1 321 KVLRDSKvsKNAVHEVVLVGGSTRIPKVQGMLSDFFGGKEPCKSinPDEAVAFGATVQAAILSGQ-DQSEKLQ 392
                 444443310346899*********************97655554449**************9985.4555554 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   6.5e-05     0.045     166     214 ..     164     213 ..     141     231 .. 0.84
   2 !    5.9   0.0    0.0018       1.2     279     339 ..     298     357 ..     269     380 .. 0.76
   3 ?   -1.3   0.2      0.29     2e+02      79     115 ..     495     532 ..     478     540 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.5e-05
   TIGR01174 166 averaglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavyt 214
                 a + agl+v +i+ ++ A+a+a  L++   e  v++ d+Gggt d+++ t
  MMETSP1174-20130828|3182_1 164 AGSIAGLNVLRIINEPTAAAIAYgLDKKGDEKNVLIFDLGGGTFDVSLLT 213
                 556699***************966999888889************99876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0018
   TIGR01174 279 elskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvfd 339
                 ++++++  ++     +  +e v+ k l++s+++++  + +vl GG +++  ++ + ++ f 
  MMETSP1174-20130828|3182_1 298 TITRARFEDMNMDYFRKCMEPVE-KVLRDSKVSKNAVHEVVLVGGSTRIPKVQGMLSDFFG 357
                 55555555555555566677786.999*****6666667************9999888885 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.29
   TIGR01174  79 hiksqnskgvvaikdk.evtqediervleaakavalpe 115
                 + ++ +++ +  ++dk  + +e+ier++++a+  + ++
  MMETSP1174-20130828|3182_1 495 EKSTGKEQKITITNDKgRLSAEEIERMVDEAERYKAED 532
                 444556666666677679999*******9998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.61
# Mc/sec: 1423.75
//
Query:       MMETSP1174-20130828|3192_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|3194_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|3195_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1174-20130828|3197_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|3198_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-16   56.2   0.0    1.2e-15   55.3   0.0    1.3  1  TIGR00505 ribA: GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0     3e-19   1.2e-15      42     168 ..     254     391 ..     239     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 3e-19
   TIGR00505  42 dvlvrihseCltGdalfslrCdCGeqleralk....liakegkGviiylrqeGrgiGlinklkayalq..dkGadtvea....nlelgfkaderdfslaaeiledlgvkkv.rlltnnPekieelkkaglkvvervpl 168
                 +  vr+h eC   d++ s  C C   l +a +    + ++ g G++iy+r+eGr++G + k   y+++  ++G d  e      +++   +d+r  +l  + l+ lgv k+ +l+     k +++ k g++vvervp+
  MMETSP1174-20130828|3198_1 254 PLTVRVHDECNGSDVFGSDICTCRPYLTHAIEecvkTAQTGGTGIVIYYRKEGRALGEVTKYLVYNMRkrQEGGDRAEEyfncTHHVAGVTDTRFQALMPDPLHWLGVTKIhKLVSMSNVKYDAIVKSGIEVVERVPI 391
                 5569*******************98777776510005566677***********************96224677776651100455555679**99**************9446677889*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1378.55
//
Query:       MMETSP1174-20130828|3199_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 421.51
//
Query:       MMETSP1174-20130828|3200_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1379.29
//
Query:       MMETSP1174-20130828|3201_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 335.97
//
Query:       MMETSP1174-20130828|3203_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 717.14
//
Query:       MMETSP1174-20130828|3206_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1174-20130828|3205_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.3   3.6      0.072   10.3   2.5    1.6  1  TIGR03875 RNA_lig_partner: RNA ligase partner, MJ_0950 family
       0.64    6.7   6.8       0.31    7.8   2.1    1.9  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR03875  RNA_lig_partner: RNA ligase partner, MJ_0950 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.5   3.5e-05     0.072     100     151 ..      97     148 ..      51     151 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.5e-05
   TIGR03875 100 lreridkGlrvaEeavreaaeee.aelekeeekkeevgeiikklRekYRealR 151
                 lr r+  G   aE+ +rea+ ++ +e+ek+ e+++e+++ii++++ekY ++ R
  MMETSP1174-20130828|3205_1  97 LRLRLRVGT-EAETLIREAKIQQiDEMEKNMEHEKELSRIIQDYKEKYADYGR 148
                 566666665.49*******87652678888889999************88766 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.1   0.00015      0.31     121     221 ..      49     149 ..      33     163 .. 0.89
   2 ?    0.3   0.1     0.028        58     129     177 ..     233     281 ..     182     289 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00015
   TIGR01843 121 davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaelekl 221
                 d v+ + +++++ +e+++++ r+ + + +++ ++leae++ l+    alr +l++  e  +  r+ k +++ ++ + +e e+e+  + ++ +e+ a+    
  MMETSP1174-20130828|3205_1  49 DSVDDIAAKKKRRLEKNRQSARDCRRRKKEHAAELEAEIACLETSNLALRLRLRVGTEAETLIREAKIQQIDEMEKNMEHEKELSRIIQDYKEKYADYGRD 149
                 378899999*****************************************************************************999999988776655 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.028
   TIGR01843 129 eqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqlelis 177
                  q  ++ s++  +ra+++++ a  ++  + ++ + +q ++l +++e+i+
  MMETSP1174-20130828|3205_1 233 IQFHQLVSKRPLVRAMIQEMRADNASVDSLIAMVGQQKHTLDSEMEAIK 281
                 4444555555556666666666666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|3210_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1174-20130828|3213_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|3214_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1174-20130828|3218_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 367.97
//
Query:       MMETSP1174-20130828|3217_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62    7.1   4.5        1.2    6.2   3.1    1.4  1  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
          2    4.2   5.5        2.9    3.7   3.8    1.1  1  TIGR00920 2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.1   0.00058       1.2      49     171 ..      59     182 ..      45     211 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00058
   TIGR03991  49 harrlteevleeryPevlvnelle.edvllvnarllpdealaeelveealkagealvqkdnlsaalladkikslelaeeleieveeefrllenlwdlvatnakaierdvelltegrkeievedk 171
                  +   t++ le+  P v +n+ ++ + +ll+ +++ + ++ +++    +++++++  +  ++ +a +++k ++ +l+ +++   +e+frl +   +  +  a++ +r  e    +r+++e++d+
  MMETSP1174-20130828|3217_1  59 STVVVTASTLESSSPVVALNKPEPeKRALLLHGQWKSVTTRERQRRLDKIAEEKKAARRAKGLKAREQAKKQEEDLSAQKQAVLKEKFRLARLRANAAKARAEEARRREEQEDLERSKKEAQDR 182
                 5556678889999999999987765889999****9988888888889999999999999999***********************************99999999999988888888888776 PP

>> TIGR00920  2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.8    0.0014       2.9     267     443 ..       5     189 ..       2     210 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0014
   TIGR00920 267 lvhahsrwvae.qnsttlvdkeltltldllvskkieesvelwefllsrlltmdldyivtailalvlavkyiffeeaetestvslkeevvspvsdqkkqses.vairekassektidvevveeekdtskeaavetlkalveetssas....kakfvvg..ksaseqeeleelkeelvelvkeprpv 443
                 +v a ++  ++ +++t+   +e+t +  ++++++  +  +  ++l     t  l  +v+++ +l + +  + +++ e e++  l +   ++v+++++q     + +ek+ ++++  ++  e++k+++++ + +    l e+ + a      ak   +  +   eqe+le+ k+e  +  ke+r++
  MMETSP1174-20130828|3217_1   5 MVDAVAKRTSDvMKATSPRPHEVTSEEPDDTERRSGPQETADDDLECSRETKLLSTVVVTASTLESSSPVVALNKPEPEKRALLLHGQWKSVTTRERQRRLdKIAEEKKAARRAKGLKAREQAKKQEEDLSAQKQAVLKEKFRLARlranAAKARAEeaRRREEQEDLERSKKEAQDRAKEERAL 189
                 566666666765668888899999999999999999999999988888889999999999999999999999***99999999999888888888877665144455555566666777777776655544443333333332222222244444442157888999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       405  (0.0987323); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.55
# Mc/sec: 979.12
//
Query:       MMETSP1174-20130828|3223_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 242.86
//
Query:       MMETSP1174-20130828|3227_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|3222_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1228.23
//
Query:       MMETSP1174-20130828|3233_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|3237_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 315.49
//
Query:       MMETSP1174-20130828|3241_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-41  137.7  10.0    6.4e-41  137.5   7.0    1.0  1  TIGR00855 L12: ribosomal protein L7/L12
     0.0077   14.5   0.8      0.012   14.0   0.2    1.5  2  TIGR03631 bact_S13: 30S ribosomal protein S13


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   7.0   3.1e-44   6.4e-41      11     125 .]       2     121 .]       1     121 [] 0.90

  Alignments for each domain:
  == domain 1    score: 137.5 bits;  conditional E-value: 3.1e-44
   TIGR00855  11 ealkeltvlelselvkalEekfgvsAaaav....aaaaaaaaa..aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvevk 125
                 e+l++lt+le+s+lvk++E+kfgv A+a       a++ a  a  ae+ eektEfdvil+ ++adkkia++kvvr itGlgLkEAk++vekaP a+ke++ ke+Ae++kk++e+aG+kv++k
  MMETSP1174-20130828|3241_1   2 EKLESLTLLEASDLVKQIEDKFGVDASAGGggmmMAMPGA--AapAEEVEEKTEFDVILSeVPADKKIAILKVVRAITGLGLKEAKDIVEKAPIAVKEATGKEDAEDVKKQIEAAGGKVDLK 121
                 89************************99652211444444..3459*************99**********************************************************987 PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.75   1.5e+03      43      65 ..       4      26 ..       2      28 .. 0.67
   2 !   14.0   0.2   5.6e-06     0.012       6      53 ..      60     109 ..      56     119 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.75
   TIGR03631 43 vkdlteeelekirevieeeykve 65
                +++lt  e++ + ++ie+++ v+
  MMETSP1174-20130828|3241_1  4 LESLTLLEASDLVKQIEDKFGVD 26
                55666667777778888777665 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 5.6e-06
   TIGR03631   6 dipknkrvei..aLtyiyGigktrakkilekagidedkkvkdlteeelek 53 
                 ++p++k++ i   +++i G+g ++ak+i+eka i+ ++ + + + e+++k
  MMETSP1174-20130828|3241_1  60 EVPADKKIAIlkVVRAITGLGLKEAKDIVEKAPIAVKEATGKEDAEDVKK 109
                 7899999988445899******************9888776655555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1174-20130828|3245_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.7   0.7      0.062   11.5   0.2    1.8  2  TIGR03678 het_cyc_patell: bacteriocin leader peptide, microcyclamide/patellamide family


Domain annotation for each model (and alignments):
>> TIGR03678  het_cyc_patell: bacteriocin leader peptide, microcyclamide/patellamide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.5e-05     0.062      13      30 ..       2      19 ..       1      19 [. 0.95
   2 ?   -3.2   0.0      0.63   2.6e+03      19      25 ..      55      61 ..      54      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
   TIGR03678 13 PViRslvgkLpsaLaELs 30
                PV+R+l+g+L  a aEL+
  MMETSP1174-20130828|3245_1  2 PVLRLLAGRLGKAPAELR 19
                ****************97 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.63
   TIGR03678 19 vgkLpsa 25
                +g++p++
  MMETSP1174-20130828|3245_1 55 AGRIPPH 61
                79*9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 419.73
//
Query:       MMETSP1174-20130828|3244_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    4.8  23.4       0.13    9.3  12.6    1.4  2  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  12.6   3.1e-05      0.13     156     289 ..       3     176 ..       1     202 [. 0.50
   2 ?   -3.9   0.1      0.32   1.3e+03     221     240 ..     243     262 ..     241     284 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 3.1e-05
   TIGR02794 156 eAakkaEeeakakaaaeakkkaEa..eeakkka...eaeak.KakaeaeaKakae..eakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerka........akqeaeladla...Glaeeknaekqgsgaagkavas........................evdkyagaikqaiq 289
                 +A   a  ea  ka  + kk+ Ea  eea+ ka    +ea+ Ka + a +Ka+ e  +a ++a ++A + A   A +Ka  + k + +a+ e           ++++ ++a+     G++ +  +  + ++  gk++a+                        ++++   ++ ++++
  MMETSP1174-20130828|3244_1   3 KAHEDAWNEACSKAFDDGKKASEAahEEARSKAfdaGKEASeKAHEAALKKARLEgfDAGKEASEKAHEDAWNGACSKAFDAGKEASEAAHE--VppqrlppsSHSSLQGANEPgshGASGTV-TSPSDQANLGKRAADaadgpvitwvreeksvmeieadsfGRAAVVYMLANDFK 176
                 34444555555555666666666644466666422256777788888888888888866666665555666666666666544433333333..14467778533333333333122333333.33333334444444444466666666666666555544433444444444444 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.32
   TIGR02794 221 eAkaKaeaeakakakaeaer 240
                 +A+a+ +  +k k+  +a +
  MMETSP1174-20130828|3244_1 243 DAAARNRFSKKIKDGYKAIK 262
                 45555544444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 685.42
//
Query:       MMETSP1174-20130828|3250_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1329.55
//
Query:       MMETSP1174-20130828|3253_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.85
# Mc/sec: 220.50
//
Query:       MMETSP1174-20130828|3248_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-92  307.5   8.1    1.7e-92  307.3   5.6    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.5e-75  251.8   8.0    1.6e-75  251.7   5.6    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.7e-56  188.1   7.6    3.1e-54  181.7   5.2    2.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      1e-55  186.8   8.2    1.3e-55  186.4   5.7    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      9e-54  180.2   8.5    1.1e-53  179.9   5.9    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.5e-52  175.6  11.1    1.6e-50  169.7   7.7    2.0  1  TIGR02415 23BDH: acetoin reductases
    3.7e-48  161.9  10.9    5.8e-48  161.3   7.5    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.1e-45  154.0   8.6    6.8e-45  151.4   5.9    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      8e-28   95.1   2.7    2.4e-25   87.0   1.8    2.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    5.4e-27   92.3  12.2    6.2e-27   92.1   7.8    1.4  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      5e-23   79.5   9.6    3.9e-22   76.6   6.7    1.9  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    4.5e-10   37.2   1.3    5.8e-10   36.8   0.9    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00095   16.6   1.5     0.0016   15.9   0.7    1.5  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.018   11.7   0.1      0.025   11.3   0.1    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.3   5.6   5.7e-95   1.7e-92       1     238 [.       8     243 ..       8     244 .. 0.98

  Alignments for each domain:
  == domain 1    score: 307.3 bits;  conditional E-value: 5.7e-95
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasd.easyitGqvlkvdGGl 238
                 a+vtGasrg+G+aia++la++ga+vv++++ ++  aee++e++k+ g++a+avk+dvs+e+ev++l++++++e+g++d+lvnnAGitrD+l++rmk +++++vi++nL gvf++tka+ k+m kkrsGri+ni+svvg +Gn+gqanYaa+K+G+ g+tk+ akE+++r++tvnav+PGfi++dmt+ l+    + i + ipl+rlg+p+eva +v fLa d +a+yitG+ ++vdGG+
  MMETSP1174-20130828|3248_1   8 AIVTGASRGLGAAIALELASSGANVVVNYAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLNL---DGIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGGI 243
                 79*******************************************************************************************************************************************************************************************85...689999********************973689************8 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.7   5.6   5.6e-78   1.6e-75       1     240 [.       6     243 ..       6     245 .. 0.98

  Alignments for each domain:
  == domain 1    score: 251.7 bits;  conditional E-value: 5.6e-78
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflase.eagyvtGatlsvnGGl 240
                 +va+vtG+++G+G+ai+ +la+ G +vv n+a+ +  a+e+ ++ ++ g+  + vkadvs+ +e +a ++   +e G+vdvlvnnaGitrd ++ +m+++q+++vi+ nl +vf+ t+  +++m+++  Gri+ni+sv G+ G  Gqany+aak G++G+tka a+e +++gvtvn+++PG+ia +m+k ++   l+ i++ iP++rlg+p e+a +v fla + +a+y+tG++++v+GG 
  MMETSP1174-20130828|3248_1   6 KVAIVTGASRGLGAAIALELASSGANVVVNYAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLN---LDGIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGGI 243
                 79******************************************************************************************************************************************************************************************9998...679************************984578***********96 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   5.2   1.1e-56   3.1e-54       2     252 ..       6     243 ..       5     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 1.1e-56
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasda.aaqitGqalsldgGw 252
                 kva+vtGa+ G+g+aia ela  Ga+vvvn +  +  ae++ +++++ g++++a+kadv++e+e++ l +a+ +efg++d+LvnnAGi     +    t++f+ +i++nl + f+ ++aa++ m k+  Gri+niasv g  + + ++ Y aaK g++G+tK+ A+E  + g+t+na+cPg++            +k   ++ +      +++  p +r+ ++ eva++++fla d  aa itG  +++dgG 
  MMETSP1174-20130828|3248_1   6 KVAIVTGASRGLGAAIALELASSGANVVVNYAAsAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASD--------MTKD--LNLDG-----IITMIPLGRLGEPSEVAGMVRFLALDPaAAYITGHEFNVDGGI 243
                 89****************************998456689999********************************************************************************************************************************************9864........4444..44444.....5567899****************98861567**********95 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   5.7   4.4e-58   1.3e-55       5     244 ..       5     242 ..       2     245 .. 0.93

  Alignments for each domain:
  == domain 1    score: 186.4 bits;  conditional E-value: 4.4e-58
   TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadiv...gvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflass.asdyvnGailavdGG 244
                  kva+vtGa++GlG +ia+ la++Ga++v   +++   ++e  e+++alG ++ ++kad+++e++++al + a++e+g++d+lvnnaGi r    + +  ++++dv+n+nl  vf+ ++a+ k + k+ r+g+i+nias++   G    + y+a+k +v+G+tk+ a+e++++g+ vna+ PG+++++ t++l  d      i+  iP gr Gep+++ag + fla + a+ y++G+ ++vdGG
  MMETSP1174-20130828|3248_1   5 AKVAIVTGASRGLGAAIALELASSGANVVvnyAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKK-RSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLNLD-----GIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGG 242
                 69*************************993323445557899**************************************************************************999888877666.5***************************************************************988.....599*********************964399************9 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   5.9   3.7e-56   1.1e-53       2     238 ..       9     243 ..       8     244 .. 0.97

  Alignments for each domain:
  == domain 1    score: 179.9 bits;  conditional E-value: 3.7e-56
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkealklvpmkrvgkaeevaalaaflmsd.daayvtrqvisvnggm 238
                 +vtgasrg+g aial+la++g ++ v y +++  aee+v++i+a g  a  +k dv++  +v ++++a ++e g    +v nagi+rd  +  +  ++++ vi+ nl g ++  +     m + r  gri+ +asv g +gn gq ny+aak g++g tka a e++ r +tvn + pg+i ++m ++ +  l+  ++++p+ r+g+++eva+++ fl  d  aay+t    +v+gg+
  MMETSP1174-20130828|3248_1   9 IVTGASRGLGAAIALELASSGANVVVNYAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKR-SGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLN--LDGIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGGI 243
                 79******************************************************************************************************************999998876.68*********************************************************99875..6999999*******************9883578***********96 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   7.7   5.4e-53   1.6e-50       1     251 [.       6     243 ..       6     245 .. 0.94

  Alignments for each domain:
  == domain 1    score: 169.7 bits;  conditional E-value: 5.4e-53
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln.eetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflase.dsdyitGqsilvdGGl 251
                 kva+vtGa++G+G aia  La  G +v+v        a e+++++k+ g++a+avk+dvs+ +ev ++ + a++++G++dvlvnnaG++    ++ ++ ++++ + n+n+ gv+   +aa +++ k+   G+i+n as+ g+ g+p ++ y+++k  v g+t++ ake++++g+tvna +PG +  +m+++++              l+ +   i lGr  eP++va++v fla + ++ yitG    vdGG+
  MMETSP1174-20130828|3248_1   6 KVAIVTGASRGLGAAIALELASSGANVVVNYAAsAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKK-RSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLN--------------LDGIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGGI 243
                 89***************************9887456799***************************************************************************9999999888765.57**********************************************************98764..............4456778********************753789************8 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   7.5     2e-50   5.8e-48       3     249 ..       5     244 ..       3     245 .. 0.94

  Alignments for each domain:
  == domain 1    score: 161.3 bits;  conditional E-value: 2e-50
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvav.ldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasdd.aafitgqvlsvsgglt 249
                  kvaivtg + g+g+ai + +a  ga+v v +  +a  ae+v ++i++ g +a av++d+++++ v a   aa + +g vdvlvnnag    + +++ +  +++ +i +nl g +   +a  k m ++++grivnias  +++g  g+a yaa kgg++ ++k+ a+e++ +g+tvn vcpg   + + +d+  +          +   iplgrlg+p ++ag + fla d  aa+itg  + v gg++
  MMETSP1174-20130828|3248_1   5 AKVAIVTGASRGLGAAIALELASSGANVVVnYAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTKDLNLD---------GIITMIPLGRLGEPSEVAGMVRFLALDPaAAYITGHEFNVDGGIA 244
                 69*************************98846778899*****************************************************999****************************************************************************************9888777776543.........44568*********************96268************86 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   5.9   2.3e-47   6.8e-45       2     264 ..       4     243 ..       3     244 .. 0.92

  Alignments for each domain:
  == domain 1    score: 151.4 bits;  conditional E-value: 2.3e-47
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasd.esryitGaqlavdaGa 264
                 + kva++tGa+rG G a a+ la+ Ga++++           +y+ a+    +e ++ ++alG +++a kadv + +e+ a  + +++efG++dv+v+naG+   g +  ++ +q+++v+++nl Gv+++ ka+  a+  ++  G i+ ++sv g  + pg+a yaaak G++g+tk+ a+e +  g+ vn++ P  ++  m++ ++           +   +++ p+  l ep +va++v +la d  ++yitG++ +vd G+
  MMETSP1174-20130828|3248_1   4 DAKVAIVTGASRGLGAAIALELASSGANVVV-----------NYA-ASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKR-SGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIASDMTK-DL----------NLDGIITMIPLGRLGEPSEVAGMVRFLALDpAAAYITGHEFNVDGGI 243
                 579************************9863...........343.455567899**********************************************************************************98777.899********************************************************99.33..........334455677888899*************873578***********97 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   1.8   8.1e-28   2.4e-25       2     264 ..       6     245 ..       5     247 .] 0.82

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 8.1e-28
   TIGR02685   2 paalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevk.eeyrrkvplgqreasaeqiadvviflv.skkakyitGtiikvdGGlsl 264
                  +a+vtGa++ +G +ia +l + G +vv+ y  sa+ a+++++++ a     a+ vkad+s+         ++ +a+  +fG+ dvlvnna       ++r   ++             +++  n    +  +ka        +a  + ++  ivn++  + +   +g + y+ ak  + G+t++ a e++++++ vn+v+pG+  + ++m+++ + +     +plg+      ++a +v fl   + a yitG    vdGG+++
  MMETSP1174-20130828|3248_1   6 KVAIVTGASRGLGAAIALELASSGANVVVNYAASAGPAEEVVEQIKAL-GMRAIAVKADVSQED----EVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQ-----------FNDVINLNLGGVFQCTKA------AFKAMAKKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGF--IASDMTKDLNlDGIITMIPLGRLGE-PSEVAGMVRFLAlDPAAAYITGHEFNVDGGIAI 245
                 69****************************************999765.6789*******9975....56788999999************876655555544433...........333333333333333333......3344455566789*************************************************6..78999998763778999****9765.5689******96368899************875 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   7.8   2.1e-29   6.2e-27     414     597 ..       5     186 ..       2     192 .. 0.93
   2 ?   -2.6   0.0      0.94   2.8e+02     641     671 ..     213     244 ..     208     245 .. 0.76

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 2.1e-29
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldae.aaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                  +va+vtG++ G+G ++a+ l++ Ga vv+    ++  ae+v ++++   G+ +a+a+k+dv +e++v+a f+++  ++G vd++vnnaGi+    +   ++++++  ++++  G f  ++ a++ + k+  +g +v ias+ + + ++++  y+aak     + +  a e ++ g+ vn+v P 
  MMETSP1174-20130828|3248_1   5 AKVAIVTGASRGLGAAIALELASSGANVVVNYAASAgPAEEVVEQIK-ALGM-RAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKR-SGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPG 186
                 59***************************987655515777777776.7887.799**************************************9999999**************************8875.789***********************************************996 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.94
   TIGR02632 641 pediaeavfllasd.klekttGliitvdaGva 671
                 p ++a  v +la d   +  tG+  +vd+G+a
  MMETSP1174-20130828|3248_1 213 PSEVAGMVRFLALDpAAAYITGHEFNVDGGIA 244
                 667788887777661456789********985 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   6.7   1.3e-24   3.9e-22       4     257 ..       4     245 ..       1     247 [] 0.84

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 1.3e-24
   TIGR03325   4 kdevvlvtggasglgralvdrfvaegarvavldksaag....leeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftv.snagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgglgv 257
                 + +v++vtg + glg a+     + ga+v v   ++ag    + e  +a g + ++v+ dv + d+     +  +++fg++d+l++nagi      +         + f++v ++n+ g + + kaa+ a+ + r + i  + s  g   n g a y+aak  v+g+ k  a e++ + v vn v pg +++d+   k l+l          + ++ +++p+gr+ +  e +g   f+a    ++ +tg  +n dgg+ +
  MMETSP1174-20130828|3248_1   4 DAKVAIVTGASRGLGAAIALELASSGANVVVNYAASAGpaeeVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMM-----RMKTQQFNDVINLNLGGVFQCTKAAFKAMAKKRSGRIVNIaSVVGQIGNPGQANYAAAKGGVLGMTKANAKEFSTRgVTVNAVCPGFIASDMT--KDLNL----------DGII-TMIPLGRLGEPSEVAGMVRFLALDPAAAYITGHEFNVDGGIAI 245
                 678**************************997655443211133334567999*********99999999999*****************7544332.....234578************************99977776662779*****************************98669*************85..44444..........3333.467999**********************************976 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.9     2e-12   5.8e-10       2     202 ..       7     194 ..       6     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 2e-12
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs 202
                 +++vtGasrG+G ++a ela+   +   v+v +a +     e  ++i+a   +++   v +d++++ +v  l+ka  ++ ++ +    +l+nnaG   d   +      +++ +   ++n+  +   t   +k++   +     +vn++s+      ++ a Y a+k     + ++ a e +   v v    pG +  dm++
  MMETSP1174-20130828|3248_1   7 VAIVTGASRGLGAAIALELAS---SGANVVVNYAASAGPAEEVVEQIKA--LGMRAIAVKADVSQEDEVTALFKAAMDEFGQVD----VLVNNAGITRDGLMMRM---KTQQFNDVINLNLGGVFQCTKAAFKAMA--KKRSGRIVNIASVVGQIGNPGQANYAAAKGGVLGMTKANAKEFStRGVTVNAVCPGFIASDMTK 194
                 79*******************...788899999***************9..677888899**********99998776555443....899****8887544443...5899999999****99999999999998..4455679********99************9999999*******999999999**********97 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   5.3e-06    0.0016       4     145 ..       6     144 ..       3     176 .. 0.75
   2 ?   -0.7   0.0      0.61   1.8e+02     181     226 ..     145     190 ..     116     199 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.3e-06
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvt 145
                 + +i+tgas glg a a  l++ g   vv        ae++ +++         +k d+++ d v  + +   +   ++d+lv na +    l   +  +++++  +  n  g f  ++  ++ +  +++++ r++ + sv 
  MMETSP1174-20130828|3248_1   6 KVAIVTGASRGLGAAIALELASSGANVVVNYAASAGPAEEVVEQIKALGMRAIAVKADVSQEDEVTALFKAAMDEFGQVDVLVNNAGITRDGLMMRM-KTQQFNDVINLNLGGVFQCTKAAFKAM--AKKRSGRIVNIASVV 144
                 5689********************9888888899999999998877666666789**********99888888888899*******99776665444.445666666666666666666555543..334455555555555 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.61
   TIGR01289 181 gkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvad 226
                 g+  + ++a   +    +l + +   +   + g++ +++ pg +a 
  MMETSP1174-20130828|3248_1 145 GQIGNPGQANYAAAKGGVLGMTKANAKEFSTRGVTVNAVCPGFIAS 190
                 5555555554444444555566666666677899999999998885 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.4e-05     0.025       3      68 ..       9      76 ..       7     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.4e-05
   TIGR01179  3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgsk.ealkalekit.evklvegdladkekleavlee 68
                +vtG++  +G+ ++ +l ++g++vvv    s g + e++++++ +  +   v++d++++ +++a++++
  MMETSP1174-20130828|3248_1  9 IVTGASRGLGAAIALELASSGANVVVNYAASAGPAeEVVEQIKALGmRAIAVKADVSQEDEVTALFKA 76
                699***99******************9999999761567777877788899**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.65
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|3254_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    7.5   5.9        0.2    7.4   4.1    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.1   4.8e-05       0.2     478     554 ..      27     103 ..       7     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 4.8e-05
   TIGR01815 478 eaeeaetelkaaalieairdakaadaakeesavakvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeel 554
                  ae aet+ ka a  ea + +++a  ++  ++++k g+ ++ +l  +  +   t a+   + G   +t r s ae  
  MMETSP1174-20130828|3254_1  27 AAELAETKRKAKAYAEARKAGRKAAKKIADADAKKAGAQRNAILAAKAAAVAETNAKAAASVGKKDATKRLSLAEVQ 103
                 57899***********************************************************9999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.57
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|3256_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   19.1   0.2       0.53    8.6   0.0    2.4  2  TIGR02657 amicyanin: amicyanin


Domain annotation for each model (and alignments):
>> TIGR02657  amicyanin: amicyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00018      0.72      10      26 ..     104     120 ..      98     128 .. 0.77
   2 !    8.6   0.0   0.00013      0.53      11      28 ..     176     193 ..     171     209 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00018
   TIGR02657  10 tpelrvkvgdavtwinr 26 
                 t   ++kvgd+vtw+  
  MMETSP1174-20130828|3256_1 104 TSSQELKVGDTVTWTAA 120
                 566789********975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00013
   TIGR02657  11 pelrvkvgdavtwinrea 28 
                  e r k gd+vtw+++++
  MMETSP1174-20130828|3256_1 176 QESRFKLGDTVTWTDTDT 193
                 58899*********9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 856.24
//
Query:       MMETSP1174-20130828|3258_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|3265_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00045   15.8   9.7    0.00045   15.8   6.7    1.3  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.011   11.8   4.2      0.019   11.1   2.9    1.3  1  TIGR01069 mutS2: MutS2 family protein
      0.032    9.7   0.0      0.043    9.3   0.0    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
      0.063    8.8  13.9     0.0041   12.7   6.6    1.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.16    8.4   3.9       0.25    7.8   2.7    1.3  1  TIGR00551 nadB: L-aspartate oxidase
       0.83    5.9  17.7      0.055    9.8   8.6    1.6  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   6.7   6.6e-07   0.00045     369     490 ..      19     140 ..       8     161 .. 0.87
   2 ?   -4.6   0.5      0.97   6.6e+02     398     412 ..     224     238 ..     216     256 .. 0.42

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.6e-07
   TIGR02169 369 elraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelsele 490
                 +l ++l +vd + + l +e+ ++k kle++  ++ne   +l+r +ee   l+ +l+   +el +++++  e+   lee +++ ++a ++l+++  +l+ +e   +k ke+ ++le+   + +
  MMETSP1174-20130828|3265_1  19 ALLRRLVAVDRARRVLTQEVLHRKDKLEEAVWRKNEADAHLERNMEEMDALHRRLRYQANELRQAQASRDEVGRVLEETQQNEREALRRLRTMTSQLHCYEVMEKKWKEDRQELESTAPSTA 140
                 577899999*****************************************************************************************999999999999999998765433 PP

  == domain 2    score: -4.6 bits;  conditional E-value: 0.97
   TIGR02169 398 lkeelnelkreldrl 412
                 +k++++ ++r+++r 
  MMETSP1174-20130828|3265_1 224 IKKKHDMIQRQQERD 238
                 222222222222222 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.9   2.8e-05     0.019     508     620 ..      40     154 ..      22     174 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   TIGR01069 508 eekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveei.irelkekkiekakekkatell...kklkeekakvpqkpk 620
                   k+++++++ + +e   +le+++ee++ l + l ++ +el q  ++  e  r l +e +++ +eal+ ++    ++   e++ekk +++++  + +       ++e+++ +++   
  MMETSP1174-20130828|3265_1  40 HRKDKLEEAVWRKNEADAHLERNMEEMDALHRRLRYQANELRQAQASRDEVGRVL-EETQQNEREALRRLRTMTSQLhCYEVMEKKWKEDRQELE-STApstASRRENRSISAEDNA 154
                 3577888888888888888888889999999999999999888888877776654.556666788999888887776246778877665555443.222233333344444444444 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   6.2e-05     0.043     915    1007 ..     176     264 ..     169     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 6.2e-05
   TIGR01408  915 ryvlkg.dltlrelida.lkkekGleatmvssGvkllyasllpkhaerlklkvselvkdvtkkklepyrkdlvvevacddeddedvevPlvsiyf 1007
                  ++ l+g d+t  e + a l +e Gl    v+sG  +l a +  + a r+k+k +++++   +++      d ++ v+c+d++ e ++   v+  f
  MMETSP1174-20130828|3265_1  176 KHRLRGgDCTTTERVTAlLSDESGLPLDDVASGLEVLLALVRDERAARIKKK-HDMIQRQQERDR-----DEKLCVVCQDAEKETLQCRAVTCAF 264 
                  56677769999987765168899**************************998.666666556554.....6677888999999999888777665 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.6     6e-06    0.0041     392     500 ..      35     143 ..      16     199 .. 0.44
   2 ?   -3.9   0.1      0.63   4.3e+02     490     501 ..     225     236 ..     202     254 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6e-06
   TIGR02168 392 eeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslq 500
                 ++++   + +le++  +++++++++er+ +e  +l+++l    +el++ q++ +e+ + lee++++++++ ++l++++ +l+  e   +k +e+ ++l++ + s++s +
  MMETSP1174-20130828|3265_1  35 TQEVLHRKDKLEEAVWRKNEADAHLERNMEEMDALHRRLRYQANELRQAQASRDEVGRVLEETQQNEREALRRLRTMTSQLHCYEVMEKKWKEDRQELESTAPSTASRR 143
                 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.63
   TIGR02168 490 qarlesleslqe 501
                 +++ ++++++qe
  MMETSP1174-20130828|3265_1 225 KKKHDMIQRQQE 236
                 111111111111 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.7   0.00037      0.25     364     462 ..      13     108 ..       7     132 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00037
   TIGR00551 364 nRlasnsLLeclvfGasaaraisrkklaasdesssavedevrleteddraelqrkvselrsllweaagivrlaesLeealak.lkelkeevdellelrnL 462
                  Rl s +LL  lv   +a r ++++ l+++d+ ++av+ +   +++++r+ + ++++ l++ l+ +a  +r+a+  +  + + l+e++++  e   lr L
  MMETSP1174-20130828|3265_1  13 ERLRSCALLRRLVAVDRARRVLTQEVLHRKDKLEEAVWRKNEADAHLERN-M-EEMDALHRRLRYQANELRQAQASRDEVGRvLEETQQNEREA--LRRL 108
                 69************99999999***9999998777777776666666633.2.33444444455555555555554444444034443333333..4444 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.6   8.1e-05     0.055      59     168 ..      26     135 ..      12     157 .. 0.85
   2 ?   -1.9   0.1      0.28   1.9e+02     166     183 ..     221     238 ..     203     260 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 8.1e-05
   TIGR03319  59 evkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaakl 168
                  v ++r+ l +e+ +r+++l+++  r ++ + +l+r++e+++  +++l+ + +el++ +++ +e  + lee++++++e L ++  +t++     ++e+  +e ++e  ++
  MMETSP1174-20130828|3265_1  26 AVDRARRVLTQEVLHRKDKLEEAVWRKNEADAHLERNMEEMDALHRRLRYQANELRQAQASRDEVGRVLEETQQNEREALRRLRTMTSQLHCYEVMEKKWKEDRQELEST 135
                 6788999999*****************************************************************************99877777777777766666554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.28
   TIGR03319 166 aklikeieeeakeeadkk 183
                 a++ik+ ++ ++++ ++ 
  MMETSP1174-20130828|3265_1 221 AARIKKKHDMIQRQQERD 238
                 222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 747.06
//
Query:       MMETSP1174-20130828|3267_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 172.95
//
Query:       MMETSP1174-20130828|3268_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|3270_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.3   0.0      0.013   11.3   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.3e-06     0.013     122     150 ..      18      46 ..       9      54 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.3e-06
   TIGR00870 122 destseftkgitalilAihkqnyeivklL 150
                 d + ++   g t+l++A+++ n+ +v+ L
  MMETSP1174-20130828|3270_1  18 DVNQGRTDTGSTPLHMAAQNGNLDVVRYL 46 
                 556677889*****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|3272_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1508.05
//
Query:       MMETSP1174-20130828|3279_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 1269.61
//
Query:       MMETSP1174-20130828|3280_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|3282_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         5  (0.00121892); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.52
# Mc/sec: 177.68
//
Query:       MMETSP1174-20130828|3284_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-12   44.0   0.1    7.1e-12   43.4   0.0    1.4  1  TIGR00229 sensory_box: PAS domain S-box protein
    3.8e-06   23.5   0.0      4e-06   23.4   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0017   15.3   0.0      0.002   15.0   0.0    1.2  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   5.2e-15   7.1e-12      10      93 ..      11      94 ..       6     106 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 5.2e-15
   TIGR00229 10 ilesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwv 93
                + + s ++i+++d++G+i + N+a+e++ G+++ e++G++  +   p+ +  e ++++e  ++ge+e + +  ++ +++Gs +w 
  MMETSP1174-20130828|3284_1 11 FTDRSEEPIVLTDDKGKIWHCNTAWEKMCGFTRSEVLGKTNKIlQGPNTNMAEAHQMVESLKSGEEEAHIQIYNY-KANGSGFWN 94
                678999*************************************55666677777777777777***********9.******995 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.9e-09     4e-06      10      58 ..      12      60 ..       4     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.9e-09
   TIGR02938 10 vdqapvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttP 58
                 d+++  i +td+k  i + n+a++++ G+++ ev+Gk + +l   +t 
  MMETSP1174-20130828|3284_1 12 TDRSEEPIVLTDDKGKIWHCNTAWEKMCGFTRSEVLGKTNKILQGPNTN 60
                577777899*********************************9876665 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-06     0.002       4      59 ..       4      58 ..       1     105 [. 0.71

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-06
   TIGR02966  4 elerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspe 59
                 +e ++k ++  ++++v++d++++i  +N+a ek+ g++ ++ lg++ +++++ p+
  MMETSP1174-20130828|3284_1  4 VIESIQKFTDRSEEPIVLTDDKGKIWHCNTAWEKMCGFTRSEVLGKT-NKILQGPN 58
                67899999******************************998877654.33333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 642.35
//
Query:       MMETSP1174-20130828|3285_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1049.91
//
Query:       MMETSP1174-20130828|3287_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1174-20130828|3290_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 157.46
//
Query:       MMETSP1174-20130828|3286_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-15   53.2   0.0    4.3e-11   40.0   0.0    2.9  2  TIGR01179 galE: UDP-glucose 4-epimerase
    2.1e-13   47.9   0.0    1.4e-07   28.7   0.0    2.8  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.7e-07   27.9   0.0     0.0018   15.3   0.0    2.2  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    2.1e-06   24.9   0.2    0.00041   17.3   0.0    2.6  3  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0019   15.6   0.0       0.71    7.2   0.0    2.6  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0036   13.9   0.0     0.0051   13.4   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
      0.004   14.1   0.1      0.015   12.3   0.1    1.8  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.013   11.7   0.0      0.019   11.2   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   8.5e-14   4.3e-11       1     129 [.      66     217 ..      66     266 .. 0.77
   2 !    8.8   0.0   0.00026      0.13     222     301 ..     326     405 ..     308     426 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 8.5e-14
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskea......lkalekit..................evklvegdladk.ekleavleeekidaviHfaaliavgEsvkeP..lkYY.ennvvntleLleamqkagvk.kliFsssaavYgese 129
                 k+++ Gg G+ G  ++ +l+++g+ev+++Dnl++ + ++      l      t                  ++ + + d+a++ + l ++l++ek+d+v+Hfa + a + s+++    +Y  +nn+ +t +Ll a++++g+  +l+   +  vYg  +
  MMETSP1174-20130828|3286_1  66 KVVILGGDGFCGWPTALHLSDSGHEVIIVDNLARRNIDTelgcasL------TpiatpetrvaawnevsgkTIRFENIDVAEEyHVLLDFLKTEKPDTVVHFAEQRAAPYSMRNAksKRYTiDNNLCGTHNLLCAIVETGIDiHLVHLGTMGVYGYGT 217
                 68999***************************98654321111111......11111112223444444777889999998762678899**********************87521455347*****************96489999*****99755 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00026
   TIGR01179 222 GtcvRDyiHveDlaeaHlaaleal.eeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaski 301
                 G   R +iH++D a     a++   eeg+ +e++n    +   v++v   v + +g+++++  ++r +    +l  +++k 
  MMETSP1174-20130828|3286_1 326 GGQTRGFIHITDTARCIELAMNSPpEEGAPVEILNQ-IAETRRVRDVAALVAEQTGVKVQYLNNPRNEAAENELDVSNKKF 405
                 45579****************9862567899****7.567889*******************9999988777776666655 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.8e-10   1.4e-07      47     135 ..     128     219 ..      66     283 .. 0.77
   2 !   16.2   0.0   1.8e-06   0.00091     195     233 ..     310     348 ..     302     417 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.8e-10
   TIGR01181  47 edeerysfvkgdiadr.elverllkeedvdavvnfaaeshvDrsisepe...afietnvvGtytlleavrkelkevrllhistDevyGdlekd 135
                 +  + ++f++ d+a++ +++ + lk+e++d+vv+fa +     s+ +++     i+ n+ Gt+ ll a+ ++  +++l+h+ t  vyG  +++
  MMETSP1174-20130828|3286_1 128 SG-KTIRFENIDVAEEyHVLLDFLKTEKPDTVVHFAEQRAAPYSMRNAKskrYTIDNNLCGTHNLLCAIVETGIDIHLVHLGTMGVYGYGTSG 219
                 44.6799******97626668999************88888777776651115799****************99*************965554 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.8e-06
   TIGR01181 195 litnalagkklpvyGdGqqvrDwlyveDhcraielvlek 233
                 + ++   + +l++yG+G q r +++++D++r iel ++ 
  MMETSP1174-20130828|3286_1 310 FLMQSALDIPLTIYGTGGQTRGFIHITDTARCIELAMNS 348
                 5566677889************************99865 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06    0.0018       1     122 [.      67     217 ..      67     226 .. 0.78
   2 !   10.3   0.0   0.00012     0.061     208     274 ..     324     391 ..     318     397 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-06
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk.....................gekllnlkdeeia.dyidkeellerleke.elkkveavfHeg...A..isdTteldgellmenNyeyskellelcaekev..kliYASSAavYGdse 122
                 +++ Gg Gf G   + +l ++g +++++vD+l +                      + + ++++++i  + id +e  + l +  +++k ++v+H +   A   s   +  +++ ++nN+  +++ll + +e+++  +l+     +vYG ++
  MMETSP1174-20130828|3286_1  67 VVILGGDGFCGWPTALHLSDSG-HEVIIVDNLARrnidtelgcasltpiatpetrVAAWNEVSGKTIRfENIDVAEEYHVLLDFlKTEKPDTVVHFAeqrAapYSMRNAKSKRYTIDNNLCGTHNLLCAIVETGIdiHLVHLGTMGVYGYGT 217
                 6899****************99.89*******999***************998764477777777774356666655555555456689999999542223125667778899**************9999987522678888889998665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00012
   TIGR02197 208 kdGeqlRDFvyvkDvvkvnllllekkeksG....ifnvGtgkarsfndlaaavvkalgkdekieyidmPea 274
                   G+q+R F+++ D ++++ l+++++ + G    i n   +++r  +d+aa v +++g   k++y+++P +
  MMETSP1174-20130828|3286_1 324 GTGGQTRGFIHITDTARCIELAMNSPPEEGapveILN-QIAETRRVRDVAALVAEQTG--VKVQYLNNPRN 391
                 679***********************99995544555.46889999******999999..579*****976 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.89   4.5e+02       1      26 [.      67      92 ..      67     112 .. 0.82
   2 !   17.3   0.0   8.1e-07   0.00041      69     127 ..     153     215 ..     119     224 .. 0.83
   3 !    4.8   0.0    0.0053       2.7     204     266 ..     325     389 ..     305     408 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.89
   TIGR04180  1 vlvtGadGfiGshlvealvekGaevr 26
                v++ G dGf G   + +l ++G+ev 
  MMETSP1174-20130828|3286_1 67 VVILGGDGFCGWPTALHLSDSGHEVI 92
                678999*****999999999999875 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 8.1e-07
   TIGR04180  69 kgvdvvfhlaaliaiPysyvapes..y.vetnvkGtlnvlqaardleve.kvvhtstsevyGt 127
                 ++ d+v+h+a   a Pys   ++s  y ++ n+ Gt n+l a  +++++ ++vh  t  vyG 
  MMETSP1174-20130828|3286_1 153 EKPDTVVHFAEQRAAPYSMRNAKSkrYtIDNNLCGTHNLLCAIVETGIDiHLVHLGTMGVYGY 215
                 45699*************98776533459*******************7589********995 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0053
   TIGR04180 204 slsPtrdfnyvkdtvegfiavaesdkavGevinigsnf.e.isigdtvkliaeilgkeveivtde 266
                 +   tr f +++dt++ +   ++s+   G  ++i ++  e   + d+++l+ae  g++v+   + 
  MMETSP1174-20130828|3286_1 325 TGGQTRGFIHITDTARCIELAMNSPPEEGAPVEILNQIaEtRRVRDVAALVAEQTGVKVQYLNNP 389
                 55679**************99****999*999998875231469*************99976554 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0034       1.7       1      33 [.      67      99 ..      67     219 .. 0.89
   2 !    7.2   0.0    0.0014      0.71     188     218 ..     323     353 ..     304     367 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0034
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrske 33
                v+i Gg G+ G   + +l+++ghev+i+   ++
  MMETSP1174-20130828|3286_1 67 VVILGGDGFCGWPTALHLSDSGHEVIIVDNLAR 99
                799**********************99865555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0014
   TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsG 218
                  G+G q   +ih+ D+++ i+ a++++  +G
  MMETSP1174-20130828|3286_1 323 YGTGGQTRGFIHITDTARCIELAMNSPPEEG 353
                 59**********************9987777 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.9e-06    0.0051       2      32 ..      66      97 ..      65     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.9e-06
   TIGR03026  2 kiavv.GlGYvGlplaallaekgheVvgvDid 32
                k++++ G G+ G p+a++l++ gheV+ vD  
  MMETSP1174-20130828|3286_1 66 KVVILgGDGFCGWPTALHLSDSGHEVIIVDNL 97
                56666257**********************74 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   2.8e-05     0.015      61     133 ..     137     213 ..      63     219 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
   TIGR02622  61 gdi.rdaeklekaieevkPeivfhlaaqplvrksYkd...PletfetnvlGtvnlleavralesvkavvlvtsDkvY 133
                  d+ ++++ l +++++ kP+ v h+a q     s ++      t++ n+ Gt nll a+ ++     +v + +  vY
  MMETSP1174-20130828|3286_1 137 IDVaEEYHVLLDFLKTEKPDTVVHFAEQRAAPYSMRNaksKRYTIDNNLCGTHNLLCAIVETGIDIHLVHLGTMGVY 213
                 233145678999**************99777777655111567999***********99988877777766665555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05     0.019     376     488 ..      61     179 ..      50     197 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.7e-05
   TIGR03997 376 arrrkkvlvvGg.GPaGleaaataarrGhrvtllereee..lGGqvklaaklpgre...elaelvrdlaselkelgvevklGveadaelvlaekPDavvlatGsrparpdlagadserv 488
                 + ++kkv+++Gg G  G   a   +  Gh+v+++++ ++  +  ++  a+  p  +    +a+  +   ++++   ++v    ++  + ++ ekPD+vv  +  r+a+ ++  a+s+r 
  MMETSP1174-20130828|3286_1  61 SDAPKKVVILGGdGFCGWPTALHLSDSGHEVIIVDNLARrnIDTELGCASLTPIATpetRVAAWNEVSGKTIRFENIDVAEEYHVLLDFLKTEKPDTVVHFAEQRAAPYSMRNAKSKRY 179
                 556799999987699*******************974431134444445544444310033344444556788889999999999**************99999999999988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 1112.48
//
Query:       MMETSP1174-20130828|3292_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 502.41
//
Query:       MMETSP1174-20130828|3298_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   16.1   0.1     0.0031   15.7   0.1    1.1  1  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   7.6e-07    0.0031      16      62 ..      14      60 ..      11      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.6e-07
   TIGR04104 16 lkslfskkkkikCpnCgekqyltaksrkksvlllliplllllallll 62
                ++ ++++ ++  C++C e  +    +r++++l+l++++l+l+ + ++
  MMETSP1174-20130828|3298_1 14 VRGYWRASENENCQSCDEDRFSGMGTRFWVMLSLVVSILVLVCIQMM 60
                56799999999*****************************9999643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.63
# Mc/sec: 188.56
//
Query:       MMETSP1174-20130828|3293_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   27.1   0.0    3.3e-06   23.6   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.6e-06   23.5   0.0    0.00023   17.9   0.0    2.4  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.012        25     213     239 ..     161     187 ..     150     194 .. 0.78
   2 !   23.6   0.0   1.6e-09   3.3e-06     251     331 ..     268     360 ..     252     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.012
   TIGR01389 213 kqlleylkkereksGiiYassRkkvee 239
                  +l + l++ ++  G+++++sRkk  e
  MMETSP1174-20130828|3293_1 161 MKLARALNEMDKLPGVVFCMSRKKCVE 187
                 4677788899999**********9654 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.6e-09
   TIGR01389 251 alaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvi..hldlPknle...........syyqeaGRaGRDGlkaeaillysea 331
                 ++ +haG+    R+    +F+   vk+v at    +G++ +  R v+   +d P++l+           +++q aGRaGR G   +++++y+++
  MMETSP1174-20130828|3293_1 268 VAYHHAGMLPVLREFVELCFQDRLVKLVFATETLAVGVNMPA-RSVVftQVDKPNDLDegeshrwfrtdEFWQMAGRAGRRGMDVQGFVFYAPT 360
                 44568**********************************996.5555125788999853333333333369********************975 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0048       9.8     211     248 ..     155     194 ..     148     202 .. 0.73
   2 !   17.9   0.0   1.1e-07   0.00023     252     333 ..     267     360 ..     253     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0048
   TIGR00614 211 kiledllkfiv..kefkgksGiiYClsrkkveqvaaeLqk 248
                 ++ ++++k+ +  +e++   G+++C+srkk+ + a+ +  
  MMETSP1174-20130828|3293_1 155 NFKHECMKLARalNEMDKLPGVVFCMSRKKCVEGAHAIGG 194
                 666777777664457777789*********9887776655 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.1e-07
   TIGR00614 252 aaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk..si...es........YYqesGRaGRDglksecvlfyapa 333
                   a +hag+    r+ v+  f+   +++v at    +G+n p  R v+  ++ k  ++   es        ++q +GRaGR g+  +  +fyap+
  MMETSP1174-20130828|3293_1 267 GVAYHHAGMLPVLREFVELCFQDRLVKLVFATETLAVGVNMPA-RSVVFTQVDKpnDLdegEShrwfrtdeFWQMAGRAGRRGMDVQGFVFYAPT 360
                 344558**********************************995.8888876654335532222332222339********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:01.10
# Mc/sec: 865.13
//
Query:       MMETSP1174-20130828|3303_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:01.02
# Mc/sec: 350.68
//
Query:       MMETSP1174-20130828|3304_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 432.63
//
Query:       MMETSP1174-20130828|3306_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 424.94
//
Query:       MMETSP1174-20130828|3307_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1174-20130828|3310_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 196.52
//
Query:       MMETSP1174-20130828|3321_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 318.19
//
Query:       MMETSP1174-20130828|3323_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 697.17
//
Query:       MMETSP1174-20130828|3327_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|3329_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 707.61
//
Query:       MMETSP1174-20130828|3331_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    4.2  18.6        2.6    5.0  11.8    1.4  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  11.8   0.00063       2.6      72     168 ..      13     123 ..      10     131 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00063
   TIGR00601  72 vmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre..............tlvvGsere.etveeimemG 168
                 +m sk   +++++++ ++t+ + + +t  +  +++++ ++++Pa++ ++++  + +++at ++s+++ + +++d + e              ++  G e e + +ee+me+G
  MMETSP1174-20130828|3331_1  13 CMASKDPFTTTTTTTTTTTTITTTGSTH-TETTTTTTTTTTPPATTPAPDTGITSSTAATPPASSSSIELASSDDSDEvmaalgkmtsdfgaAFGSGDEPEmDRLEELMEIG 123
                 7888887777555555444444444443.55566677778899999999999999999999999999998888777777777888887776666666666524577777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.71
# Mc/sec: 375.52
//
Query:       MMETSP1174-20130828|3333_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 748.96
//
Query:       MMETSP1174-20130828|3336_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       464  (0.113116); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1031.36
//
Query:       MMETSP1174-20130828|3337_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   20.4  14.6      2e-05   20.3  10.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    2.2e-05   20.2  14.1    2.2e-05   20.1   9.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0021   14.9  12.8     0.0023   14.8   8.8    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
  ------ inclusion threshold ------
      0.037   11.9   3.1       0.04   11.8   1.8    1.4  1  TIGR00244 TIGR00244: transcriptional regulator NrdR
      0.058   10.3   4.8      0.062   10.2   2.9    1.4  1  TIGR00999 8a0102: membrane fusion protein cluster 2 protein
        1.7    5.4  11.6        2.4    4.9   8.0    1.3  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  10.1     3e-08     2e-05     795     925 ..       7     131 ..       1     136 [] 0.54

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3e-08
   TIGR02168 795 qlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrek 925
                 +l  e  ++  als++e+++t+l ee+a+++   +++e++ia++e+ + e+e q ++l+ee+e ++ e+e++ +++++ e++l  +++++as+    ++++   e  +++l e+e ++++l++e+e++++ 
  MMETSP1174-20130828|3337_1   7 TLGGEKGDIAVALSNAETKVTALTEELASTRVLKSDVESNIAEIERGMIEAEHQRDSLREEVECMTTELESQVKSKQDVEKQLVGMQEKMASV----MSAE--AEMHTQQLSETEAEKSKLKEEIEARDAT 131
                 444445555556666666666666666666666666666666666666666666666666666666666666666666666666666666422....2222..2233344444444444444444444433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   9.8   3.3e-08   2.2e-05     793     919 ..       4     131 ..       1     136 [] 0.52

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.3e-08
   TIGR02169 793 kieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkd.Lkkereeleaelrelekkkeeleaeiekkrkr 919
                 +i ++  e+ ++   +s+ e ++ ++ +el + ++ k   e++i+e+++ ++e+e+q++++++e+e + ++le+  +  +  e+++  ++e+ +  +++e e + ++l+e e +k +l++eie +   
  MMETSP1174-20130828|3337_1   4 EIATLGGEKGDIAVALSNAETKVTALTEELASTRVLKSDVESNIAEIERGMIEAEHQRDSLREEVECMTTELESQVKSKQDVEKQLVGMQEKMASvMSAEAEMHTQQLSETEAEKSKLKEEIEARDAT 131
                 45555555555555566666666666666666666666666666666666666666666666666666655444444444444444444444433134455555555666666666666666554444 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   8.8   3.4e-06    0.0023     151     269 ..       4     126 ..       1     134 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.4e-06
   TIGR01843 151 qikqleaeleglqaqlqalrqqleliseelealrkLkek..glvs..rlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardrlq 269
                 +i+ l  e  +++ +l +++++++++ eel ++r Lk++    ++  +  ++e+e +r++l++e++ ++ ele++ +  +++e++l ++++k+++ +s+e++  +++l+e e+e sk++++ +
  MMETSP1174-20130828|3337_1   4 EIATLGGEKGDIAVALSNAETKVTALTEELASTRVLKSDveSNIAeiERGMIEAEHQRDSLREEVECMTTELESQVKSKQDVEKQLVGMQEKMASVMSAEAEMHTQQLSETEAEKSKLKEEIE 126
                 6666677778899999********************975223333124569******************************************************************999764 PP

>> TIGR00244  TIGR00244: transcriptional regulator NrdR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.8   5.9e-05      0.04      44     109 ..      31      91 ..      19     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.9e-05
   TIGR00244  44 velvivkvvkkdgvreefdrekllrGllralekrpvslddlekiieeiekelraqgerevkselvG 109
                  el   +v+k+d +    +   + rG+++a  +r+   +++e + +e+e+++++  +++v+ +lvG
  MMETSP1174-20130828|3337_1  31 EELASTRVLKSDVES---NIAEIERGMIEAEHQRDSLREEVECMTTELESQVKS--KQDVEKQLVG 91 
                 466677788877554...456799*************************99875..6778888888 PP

>> TIGR00999  8a0102: membrane fusion protein cluster 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.9   9.1e-05     0.062      12      87 ..      38     112 ..      30     127 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.1e-05
   TIGR00999  12 vvdsrlvkeelakvaaelkeaqkrvelarktYerekklfeqkvipkqefekaeakleeakaevkaakselkalrea 87 
                 v++s +v+ ++a++   + ea+ + ++ r+  e   + +e +v +kq++ek+ + ++e+ a+v  a++e+   + +
  MMETSP1174-20130828|3337_1  38 VLKS-DVESNIAEIERGMIEAEHQRDSLREEVECMTTELESQVKSKQDVEKQLVGMQEKMASVMSAEAEMHTQQLS 112
                 4566.99***********************************************************9998776555 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.0    0.0036       2.4      13     127 ..      28     117 ..      11     136 .] 0.42

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0036
   TIGR00414  13 lvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeednlevk 127
                 ++ e+l                           ++ l++  ++++ ei++ + e +++ ++l++e++ + +ele+  ++ +++e++l  +  k++ +++ +  + +++  ++e +
  MMETSP1174-20130828|3337_1  28 ALTEEL-------------------------ASTRVLKSDVESNIAEIERGMIEAEHQRDSLREEVECMTTELESQVKSKQDVEKQLVGMQEKMASVMSAEAEMHTQQLSETEAE 117
                 334444.........................444444444444444444444444444444555555555555544444444444444444444433332222222222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 460.27
//
Query:       MMETSP1174-20130828|3345_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 216.84
//
Query:       MMETSP1174-20130828|3342_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 632.16
//
Query:       MMETSP1174-20130828|3346_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.1   0.4      0.047   10.6   0.3    2.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   1.2e-05     0.047     165     244 ..     267     385 ..     218     391 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.2e-05
   TIGR03921 165 k........tvvyPAaypgVlaVgsidrsgep..ssfslag.....pwvdvaApgenlvsls.....pggdglasav..................g.espleGtSfAaplVsgvAaLvr 244
                 k          + PA+ p+V aVg++++   +  + fs  g       +d  A +   ++++     p  +++ ++                   g ++ + GtS A+p V+g+  L+ 
  MMETSP1174-20130828|3346_1 267 KgicyddkfVPWWPASSPYVTAVGATEEYELNqaATFSGGGysnryGIQDYQADAIAQYKVEtisdnPPVTYYNNSGagfpdlaavgmnywtyvgGlPTEVGGTSAATPTVAGIFSLLN 385
                 455566666778999999999999999875442266666652222223444555555554442222244444444438999999999999999976789999***********988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1325.63
//
Query:       MMETSP1174-20130828|3351_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|3350_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.67
# Mc/sec: 845.12
//
Query:       MMETSP1174-20130828|3352_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   55.5   0.0    1.7e-15   55.0   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00072   16.4   0.0     0.0052   13.5   0.0    2.0  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0013   15.7   0.5     0.0047   13.8   0.3    1.8  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0026   14.8   0.5       0.24    8.3   0.0    2.2  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.015   13.1   0.2      0.055   11.3   0.1    1.9  2  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0     2e-18   1.7e-15       3     131 ..      10     141 ..       8     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2e-18
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt.ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl...ekqtkeiiheakkkgvpiilvvnKiDlkd..dlktk 131
                 + k+ ++G ++vGKs++ ++l  +  ++  +k++v++d  +++i+++G   + ++++D++Gq   + + ++y+  +++++ ++di+    ++++     ek  + i  e+   +  + l +nKiDlk   ++++ 
  MMETSP1174-20130828|3352_1  10 TLKVILLGNGSVGKSSIVQRLVSDG-FERIYKQTVGFDCFERLITIKGTHsVVLQVWDIGGQSIASTMLPQYIHGASVIMLCYDITDS-QSFDDLDewfEKTLQNIDAENA-RQPTMYLLGNKIDLKAqrQVSSR 141
                 789********************99.**********************65899********************************977.6666665000444555555555.666789*********96544443 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.4e-06    0.0052     188     344 ..       9     170 ..       3     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.4e-06
   TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTL..eevaeadlllhvvDasdeeaeeqiea.veevLeelgaeei...pvllvlNkidkleeeeleeleekk.......eeavlvsAkkgegleeLl 344
                 ++ +v l G    GKs+++++l+++      k     d   r ++++ +++v+l      + ++  + +++   T+  + ++ a +++   D++d++  + +++  e++L++++ae++   ++ l+ Nkid+ +++++++ ++++       +   +vsA++g+++ ++ 
  MMETSP1174-20130828|3352_1   9 STLKVILLGNGSVGKSSIVQRLVSDGFERIYKQTVGFDCFERLITIKGTHSVVLQ-----VWDIGGQSIAS---TMlpQYIHGASVIMLCYDITDSQSFDDLDEwFEKTLQNIDAENArqpTMYLLGNKIDLKAQRQVSSRAHDTwindkriAGGFFVSARNGKDVLRVF 170
                 5667777777777777777777776555555555566777777777777777775.....55555555543...3222556789999*******9998877765389********998553455667******9888888777765553333447899999999987665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   5.8e-06    0.0047       2     202 ..      12     221 ..      11     226 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.8e-06
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefili...DTgGleeeedelekeireqaelaieeadvilfvvdare..glteeDeeiaklLrksk......kpvilvvNKvdnkkeeaeaaefyslGlge.....vlaiSaehgrgikdLldeileelpeeeeeeeeeeeeepikiaiiGrp..NvGKStLvNallgeervi 202
                 +v ++G   VGKS+++ rlv    + i ++t g   D  ++ +++kg++  ++   D gG      ++++++  q    i+ a+vi++  d ++    ++ De + k+L++ +        ++l+ NK+d k++++  ++++   +++      +++Sa +g+++ +++ e+ +++     ++ + e  +++ +a + r   N G+ ++  ++ +e+r++
  MMETSP1174-20130828|3352_1  12 KVILLGNGSVGKSSIVQRLVSDGfERIYKQTVGF--DCFERLITIKGTHSVVLqvwDIGGQ-----SIASTMLPQ---YIHGASVIMLCYDITDsqSFDDLDEWFEKTLQNIDaenarqPTMYLLGNKIDLKAQRQVSSRAHDTWINDkriagGFFVSARNGKDVLRVFVEVSAKMMGIPMTDYDLEFFDKVIVAEVTRSdtNEGRTSIADQIEDEDRAL 221
                 68999***************98747788777776..8888888888766555411166665.....666666665...578888998888876522567888999999988664444424578899****99888887776666554422222689***********99999999977666555555556688888888444889999999998888875 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0003      0.24     154     177 ..       9      32 ..       2      45 .. 0.83
   2 !    4.9   0.0    0.0032       2.7      86     120 ..     115     150 ..      70     176 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0003
   TIGR03597 154 ekkdvyvvGvtNVGKSsliNkllk 177
                 +  +v+++G   VGKSs++ +l++
  MMETSP1174-20130828|3352_1   9 STLKVILLGNGSVGKSSIVQRLVS 32 
                 44799****************985 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0032
   TIGR03597  86 krfvkenkvllvvNKidllpksvklek.ikewlkke 120
                 ++ +++  ++l++NKidl ++++ +++    w++++
  MMETSP1174-20130828|3352_1 115 AENARQPTMYLLGNKIDLKAQRQVSSRaHDTWINDK 150
                 3445666899********887655554045677765 PP

>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.68   5.5e+02      53      67 ..      99     113 ..      48     119 .. 0.63
   2 ?   11.3   0.1   6.6e-05     0.055      68     101 ..     204     235 ..     190     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.68
   TIGR03741  53 peELdegfaealkqy 67 
                  ++Lde f + l+++
  MMETSP1174-20130828|3352_1  99 FDDLDEWFEKTLQNI 113
                 467777777777665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 6.6e-05
   TIGR03741  68 veareslaeqvaatravleaaaakeaeaakakka 101
                  e r+s+a+q+++  ++le  aak++ +++ +k+
  MMETSP1174-20130828|3352_1 204 NEGRTSIADQIEDEDRALE--AAKRRDVTSSSKK 235
                 5779***************..7777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 788.63
//
Query:       MMETSP1174-20130828|3353_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|3355_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 948.24
//
Query:       MMETSP1174-20130828|3359_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 298.71
//
Query:       MMETSP1174-20130828|3356_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1494.00
//
Query:       MMETSP1174-20130828|3358_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   24.9  11.5    3.5e-06   23.8   8.0    1.5  1  TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC


Domain annotation for each model (and alignments):
>> TIGR00931  antiport_nhaC: Na+/H+ antiporter NhaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   8.0   8.5e-10   3.5e-06      50     186 ..     342     483 ..     317     496 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 8.5e-10
   TIGR00931  50 vsykdledaivegikkglkavlilvsvGlligtWiagGtvPtliyyGlkiisPey.llvatllicaivsvatGtsfgtvGtvGvallgigeglgid....lalvaGavvaGayfGdklsPlsdttnlasalagvdllehirh 186
                 +   d   a  eg+++ +++ ++l +  +l ++  a+Gt   l     +   P + l+  t +++ ++s atG+sfgt+G +   +  ++ +lg +    l+   Gav+ G +fG+ +sP++dtt+l+  +++  l +h++ 
  MMETSP1174-20130828|3358_1 342 MNLGDAVTAFTEGMREVIEPCVVLSLAWALGSIIAATGTATFLASALTSGGLPAWgLAPLTSVLAYVISFATGSSFGTMGILFPLVGPLAWTLGGQsvpmLTHCFGAVLGGCIFGNVFSPIADTTVLTVLATRCTLPNHVAT 483
                 445677889999********99999888887777777877666555555667888455568899**************998754444466666543221245678************************9999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1363.04
//
Query:       MMETSP1174-20130828|3360_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 540.73
//
Query:       MMETSP1174-20130828|3361_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1174-20130828|3363_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-62  209.9   0.0    1.6e-60  202.7   0.0    2.1  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00051   17.4   0.0     0.0015   15.8   0.0    1.7  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.043   10.8   0.1       0.81    6.6   0.0    2.1  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.0   1.2e-63   1.6e-60      41     343 ..     250     559 ..     215     569 .. 0.85
   2 !    4.9   0.0    0.0013       1.7     386     432 ..     651     697 ..     613     700 .. 0.85

  Alignments for each domain:
  == domain 1    score: 202.7 bits;  conditional E-value: 1.2e-63
   TIGR01982  41 eearkeslgerlrlal...eelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlveg.keVavKvlRPgiekkieadiklle.......llaklvekllpeakrlr.ptevvkefektlkeEldlrlEaanaselkenfknd..kklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdt 343
                  e++   + +r ++al   + +GP+fiKlGQ ls R+Dl+pe +a eL++Lqd+vp f+  +ar+v+ +elg   + ++F+e++e+P+A+ASi+Qv+k +l  + + VavKv+RP i ++i+ d+ +l+       +++++v+kl  +   ++   ++v+e  +   +E+d+r+Ea++   + +++k+     ++ P v+ el s+r+l++ewidg+ ++       a  d  +l    ++  l++ l+ g  H D+HpGN+l ++dg++ +lD G+  ++ ++ ++ l + +  + ++dy+++ +  +++g++p d+
  MMETSP1174-20130828|3363_1 250 LEKN---QPQRAKEALdlaNMMGPTFIKLGQALSIRTDLIPEAYALELRQLQDRVPEFESGVARQVMMNELGVsDLTTVFSELSEEPVASASIGQVYKGTLRADgRVVAVKVQRPSILSAIALDLYILRiltpfqvWISNVVNKLETDPSDIElALNLVDEWGRGFVAEVDYRAEAQKQIAFSAAMKQRglGAVMAPPVVEELSSSRLLVTEWIDGTRLDKD-----ASADVPRLCGVAINAYLTMLLDTGTLHCDPHPGNLLRTTDGRLCVLDWGMTLEVPSNLQYGLLDFIAHINSEDYEAIPNDFVNLGFTPPDK 559
                 3333...333444443111689***************************************************999999*********************97654999*****************999833333334566666666665555524689****************************99733589***********************99854.....456788*******************************************************************************999875 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0013
   TIGR01982 386 evqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklsp 432
                 +++p +l + +++ t+EG+g ++d + ++++   p++ + + +  sp
  MMETSP1174-20130828|3363_1 651 KLPPYVLYVSRAFSTLEGIGLSIDENYSILQECFPYLARRLLSDDSP 697
                 6889999999**************************99887766665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06    0.0015      49     136 ..     430     519 ..     413     530 .. 0.80
   2 ?   -2.6   0.1      0.49   6.7e+02     164     197 ..     614     647 ..     594     648 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR03724  49 rllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekelell.kevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLg 136
                  ++++     v +P v++   ++  +v e i+g++l +  +++  +l+  ++  ++ +l ++g +h D+++ N++  +d++l+++D G+ 
  MMETSP1174-20130828|3363_1 430 AAMKQRGLGAVMAPPVVEELSSSRLLVTEWIDGTRLDKDASADVPRLCgVAINAYLTMLLDTGTLHCDPHPGNLLRtTDGRLCVLDWGMT 519
                 555555555688999999889999************99999977765526899999*****************9874799********96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.49
   TIGR03724 164 aeelieaflegYkeeveeekavlekvkeiesrgR 197
                  +e+i++f+++ k+e  + + v++ ++e+ +r R
  MMETSP1174-20130828|3363_1 614 RDEMISRFEDELKAEGVDVTGVTSVMEEMSRRNR 647
                 5666777777777776666667777777777766 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.018        25      53      91 ..     441     481 ..     418     488 .. 0.75
   2 ?    6.6   0.0   0.00059      0.81     144     170 ..     489     516 ..     482     521 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.018
   TIGR02721  53 laPkvi..lvneewllvewleGevitkdefvaldellelaa 91 
                 +aP v+  l   + l+ ew++G+ + kd    ++ l+ +a 
  MMETSP1174-20130828|3363_1 441 MAPPVVeeLSSSRLLVTEWIDGTRLDKDASADVPRLCGVAI 481
                 56666622345667888**********99999999999886 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00059
   TIGR02721 144 lklallHlDvhaeNlvkteqG.lklIDW 170
                 l    lH D h +Nl++t +G l ++DW
  MMETSP1174-20130828|3363_1 489 LDTGTLHCDPHPGNLLRTTDGrLCVLDW 516
                 667789***************6689999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.21s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 2148.61
//
Query:       MMETSP1174-20130828|3364_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1312.94
//
Query:       MMETSP1174-20130828|3365_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 516.64
//
Query:       MMETSP1174-20130828|3366_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1245.85
//
Query:       MMETSP1174-20130828|3370_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 361.91
//
Query:       MMETSP1174-20130828|3371_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1261.23
//
Query:       MMETSP1174-20130828|3372_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 469.73
//
Query:       MMETSP1174-20130828|3373_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 777.79
//
Query:       MMETSP1174-20130828|3374_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 757.20
//
Query:       MMETSP1174-20130828|3375_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 591.51
//
Query:       MMETSP1174-20130828|3376_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 573.11
//
Query:       MMETSP1174-20130828|3377_1  [L=1251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    6.1  19.5        1.9    5.3  13.5    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.5   0.00046       1.9     362     512 ..     914    1074 ..     911    1109 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00046
   TIGR01628  362 qrkeqRkarLqqqfmqasaesrql.........sigspvigaanisgrhqaaqqqavvt...........qavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpqaqskn.qmqqvvqdnnlpq 512 
                  +rke++ ++ +q +mqa++e+            +        ++  g hq++q q++ +           ++++qq  +q+ +++   ++    +++++  p a    + q++q++     +++ n+   g++++++q+  s+ ++++ + q q+q++  q ++  +++n p 
  MMETSP1174-20130828|3377_1  914 RRKEEKATTKEQIRMQAQMEMSGKgghqggkggH--------QGGKGGHQGNQGQQYGGrqpqqqqqyggRQPQQQHMQQQGGYPGYPQQRGGPQNGRDYDPRAGGYGGRQGPQQG----QQHGgNQRFGGQQDHRAQQHHSQDPRQDPRSQHQSQDPRyQNHRHGPPQNTPM 1074
                  799*************999998776544433331........33445555555555554110000000004444444444444443333333333333333333333333333333....33332444444444455555555555555555444433323333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.21s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 2579.97
//
Query:       MMETSP1174-20130828|3378_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:00.47
# Mc/sec: 2704.37
//
Query:       MMETSP1174-20130828|3380_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 538.52
//
Query:       MMETSP1174-20130828|3379_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-55  183.6   0.0    7.1e-55  183.3   0.0    1.1  1  TIGR00505 ribA: GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.0   1.7e-58   7.1e-55       3     191 .]      60     252 ..      58     252 .. 0.92

  Alignments for each domain:
  == domain 1    score: 183.3 bits;  conditional E-value: 1.7e-58
   TIGR00505   3 vaeaklptkyGklkivgfkekedd...keelllvkadis..aeedvlvrihseCltGdalfslrCdCGeqleralkliakegkGviiylrqeGrgiGlinklkayalqdkGadtveanlelgfkaderdfslaaeiledlgvkkvrlltnnPekieelkkaglkvvervpliveenkenekyletkkekmGhll 191
                 v e +lpt+ G+++  +++    d    e ++++ ++ +  a e + vr+h +C+t ++l s+rCdC eql+ al++i++ g G +iyl+qeGrgiGl nk+ ay+lqd G dtv+an elgf++d r+++  + il d++ ++++lltnnP+k++ l   g++v   vpl v  +k ne+yl+tk+++m h l
  MMETSP1174-20130828|3379_1  60 VDECELPTAQGHFRLRAYRWYRPDgtmIEPVVMIPTNWTrhALESPAVRVHDQCMTSEVLGSQRCDCKEQLDLALQRIQEIG-GAVIYLQQEGRGIGLANKVAAYRLQDSGLDTVDANRELGFADDLRSYECISFILDDIEFDSIKLLTNNPRKMRLLRANGVTVEAIVPLHVPPTKWNERYLRTKARRMAHAL 252
                 67899*********99988766655556666666665544677999*********************************999.*******************************************************************************999999************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1095.91
//
Query:       MMETSP1174-20130828|3381_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1288.83
//
Query:       MMETSP1174-20130828|3382_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   14.7   0.8      0.023   13.5   0.6    1.6  1  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.6   5.6e-06     0.023      21      78 ..      33      89 ..      24      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.6e-06
   TIGR01870 21 rrsekkneeivaelellkvklaYavgreg.refeelvelleelldkidkiddderrafe 78
                +r+e+++  + ++l  l++kl Y +++++ +  +el+ l+e++ +  dk+d++  + ++
  MMETSP1174-20130828|3382_1 33 NRKEHLSDALMKKLGRLNAKLRYFQAKHDlKRVRELEVLIEAIYEHTDKKDKE--NSLD 89
                456899999********************999999**************9554..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1707.61
//
Query:       MMETSP1174-20130828|3383_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|3384_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1368.18
//
Query:       MMETSP1174-20130828|3386_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       554  (0.135056); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 300.64
//
Query:       MMETSP1174-20130828|3388_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1256.34
//
Query:       MMETSP1174-20130828|3389_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062    9.5   3.2      0.069    9.3   2.2    1.1  1  TIGR02350 prok_dnaK: chaperone protein DnaK


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.2   1.7e-05     0.069     497     583 ..       4      94 ..       1     106 [. 0.77

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.7e-05
   TIGR02350 497 glseeeiermvkeaeanaeedkkkke...evearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedveek.ikakteel 583
                  l ++ei rm ++a+++ e+ ++ +e   ++e+   ++   y+ e +l+ +  + + e + ++e++ + l+++++++dve + ++++++++
  MMETSP1174-20130828|3389_1   4 ALLQAEIARMAEDAQRQTERARQAEEarlQAETVHVVEIGRYAEEAQLQAERLRQSGEGRLQAEMRASGLENMVRRTDVEIEhLRREIARI 94 
                 67899**********9999887766522256777777888899999999998888899999999999999999999998654455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.25s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 433.19
//
Query:       MMETSP1174-20130828|3390_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 578.72
//
Query:       MMETSP1174-20130828|3387_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1421.42
//
Query:       MMETSP1174-20130828|3391_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1273.52
//
Query:       MMETSP1174-20130828|3394_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 849.68
//
Query:       MMETSP1174-20130828|3392_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 2330.65
//
Query:       MMETSP1174-20130828|3393_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 1420.10
//
Query:       MMETSP1174-20130828|3395_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 1972.07
//
Query:       MMETSP1174-20130828|3396_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.53
# Mc/sec: 318.77
//
Query:       MMETSP1174-20130828|3398_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1174-20130828|3400_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   25.6   0.0    1.2e-06   25.4   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.9e-06   23.8   0.0    3.6e-06   23.5   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    0.00096   14.8   0.0     0.0011   14.6   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.9e-10   1.2e-06      13      74 ..      34      96 ..      28     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 8.9e-10
   TIGR00614 13 rpvqlevinavlegrdalvvmatGgGksLCyqlpavvs.dgltlvisPLisLmeDqvlqLkas 74
                r  q+ev ++  + +da+ +  tG GksLC  lp++   +gl+l i  L  L ++q + L++ 
  MMETSP1174-20130828|3400_1 34 RGSQVEVFETFGASQDAICINGTGVGKSLCKFLPPLREnSGLSLFIEALHDLAKEQTDLLNQI 96
                6789*******************************985269***************9999875 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.6e-09   3.6e-06      15      75 ..      34      95 ..      30     104 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.6e-09
   TIGR01389 15 RggqeeiieevldgrdvlavlPtGGGkslCYqvPaLllk.gltvvisPLisLmkDqvdqLra 75
                Rg q e+ e+  + +d++ +  tG GkslC  +P L  + gl++ i  L  L k+q d L++
  MMETSP1174-20130828|3400_1 34 RGSQVEVFETFGASQDAICINGTGVGKSLCKFLPPLRENsGLSLFIEALHDLAKEQTDLLNQ 95
                899*********************************86439*****************9997 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.9e-07    0.0011      11      54 ..      30      73 ..      25      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.9e-07
   TIGR04121 11 gweprafQkevleaaeegesglliapTGaGKTlavflpsliela 54
                +++pr  Q ev+e++ + ++++ i  TG GK l  flp+l e  
  MMETSP1174-20130828|3400_1 30 KFSPRGSQVEVFETFGASQDAICINGTGVGKSLCKFLPPLRENS 73
                6899999********************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|3402_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|3403_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.2   0.0      0.039   11.8   0.0    1.2  1  TIGR00729 TIGR00729: ribonuclease HII


Domain annotation for each model (and alignments):
>> TIGR00729  TIGR00729: ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.6e-06     0.039      32      90 ..      50     107 ..      41     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.6e-06
   TIGR00729  32 lrklgvkDSKkLtkekReeLakkiedklarvevlliepeeidrereinlneaeiekvsa 90 
                 l+ +gv+D K L k   + L++k+ +  ++  +l   peeid+ +e+ l ++++e ++ 
  MMETSP1174-20130828|3403_1  50 LKFVGVDDNKTLGKLYDRILFRKLLH-AGESITLGKLPEEIDEATEVILGTKNAELMAS 107
                 7889*********************6.8888899999*****87766665555444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.62
# Mc/sec: 423.64
//
Query:       MMETSP1174-20130828|3405_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 952.21
//
Query:       MMETSP1174-20130828|3406_1  [L=1009]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.13s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 2895.15
//
Query:       MMETSP1174-20130828|3408_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 2415.40
//
Query:       MMETSP1174-20130828|3412_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 867.93
//
Query:       MMETSP1174-20130828|3409_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|3413_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 170.31
//
Query:       MMETSP1174-20130828|3415_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 608.09
//
Query:       MMETSP1174-20130828|3411_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.72
# Mc/sec: 722.27
//
Query:       MMETSP1174-20130828|3414_1  [L=831]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-84  282.2   0.0    2.1e-84  281.5   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    1.5e-05   22.4   0.0    2.8e-05   21.5   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0092   14.1   3.3       0.16   10.2   0.3    2.9  2  TIGR02448 TIGR02448: conserverd hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   0.0   1.5e-87   2.1e-84      48     430 ..     154     535 ..     116     540 .. 0.92

  Alignments for each domain:
  == domain 1    score: 281.5 bits;  conditional E-value: 1.5e-87
   TIGR01982  48 lgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlve.gkeVavKvlRPgiekkieadikllellaklvekllpe.akrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgep.ivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkkl 430
                 + + lr++l +lGP +iKlGQ ls R+D+l ++ + +L++L+dkvppfd + a ++i +elg+  v+e+++++  +P+AaAS++Qv+kA+l e g+eVavKv+RP + ++++ d++l +l+   + k+ pe +kr++ + + +ef+    +Eld++lE an  +l++ ++  +++++P  y + t++rv t ew++g ++s+ ++      d  +l + +v + l+q l+ gfFHaD+HpGN+l + dg++++lDfG++ ++++++r+ ++e +  +++rdy+ + +  +++ ++p  +d+a +  a+ +v +  + g  +k +++ +l a+l +it +f  +++p  +L+++++ ++EG++   +p++ + + a p++ k + +  
  MMETSP1174-20130828|3414_1 154 AVAGLRRVLVSLGPFYIKLGQALSIRPDILSPQAMVQLQQLCDKVPPFDSSIAFQTIREELGIsDVSEVYSKITPEPVAAASLGQVYKATLREsGEEVAVKVQRPFVLETVSLDLHLTRLAGLALRKIDPEsSKRVDIVSLLDEFAVNFYQELDYELECANGIRLAKEMRVLPRVKIPFNYPHVTARRVHTAEWVEGEKLSQSTA-----DDVGELVNLGVITYLTQLLDTGFFHADPHPGNMLRTPDGQLVILDFGLMTEVTDDQRYGMIEAIAHLINRDYALIGDDFVNMDFIPRGVDTAPIVPALTRVFDAaLAGGGAKSLNFQELAADLAEITFEFPFRIPPYSALIIRAVSVLEGIALVGNPQFAIIDEAYPYLAKRLLTDG 535
                 45679**********************************************************99**************************8626*********************998888888888765279***************************************************************99987654.....47789***********************************************************************************************9996267999**********************************************************998776655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     2e-08   2.8e-05      34     144 ..     305     415 ..     302     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2e-08
   TIGR03724  34 elDeklrke...RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekelellk.evGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkkskeved 144
                 elD +l      R  kE+r+l ++k    n P+v     +    + e +eg+kl++++ ++  el++  v +++ +l ++g+ h D+++ N++ + d++l+++DfGL     + + 
  MMETSP1174-20130828|3414_1 305 ELDYELECAngiRLAKEMRVLPRVKIP-FNYPHVTARRVH----TAEWVEGEKLSQSTADDVGELVNlGVITYLTQLLDTGFFHADPHPGNMLRTpDGQLVILDFGLMTEVTDDQR 415
                 566666543222777777777776543.566666555555....89************99665555424557899*****************986599********9877666555 PP

>> TIGR02448  TIGR02448: conserverd hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.3   0.00011      0.16      31      72 ..      34      72 ..       3      91 .. 0.81
   2 ?    3.3   0.1     0.016        22      28      77 ..     646     696 ..     637     724 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00011
   TIGR02448 31 vaassavtsdvtssfkddKlvieArddaasfVasdGaiRGar 72
                   s+a+tsd+++ ++d++  ++A +  a+fV    a+RG++
  MMETSP1174-20130828|3414_1 34 NPLSMAATSDLSQNMRDMREAMAADEKNAAFVE---AMRGTN 72
                45799***************************6...566665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.016
   TIGR02448  28 travaassavtsdvtssfkddKlvieArddaasfVasdGai.RGarlEaAl 77 
                  +a+aa++av  ++ +    +K   +Ar+ +  f + +G++ RG  lE  +
  MMETSP1174-20130828|3414_1 646 PTATAATTAVQEEILTGEATEKTASNAREALRFFFSEEGEVfRGFLLEEVV 696
                 458899999999***************************966999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2742.07
//
Query:       MMETSP1174-20130828|3417_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|3418_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1174-20130828|3419_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 508.16
//
Query:       MMETSP1174-20130828|3420_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1351.57
//
Query:       MMETSP1174-20130828|3421_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 838.52
//
Query:       MMETSP1174-20130828|3424_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 809.53
//
Query:       MMETSP1174-20130828|3425_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|3428_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|3429_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 934.08
//
Query:       MMETSP1174-20130828|3430_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-31  107.1   0.1    2.1e-31  106.1   0.1    1.5  1  TIGR02656 cyanin_plasto: plastocyanin
    4.5e-14   50.3   0.5    7.5e-14   49.6   0.3    1.3  1  TIGR03102 halo_cynanin: halocyanin domain
    3.1e-10   37.7   0.1    5.9e-10   36.8   0.0    1.5  1  TIGR02375 pseudoazurin: pseudoazurin
    1.7e-07   29.4   0.0    3.2e-07   28.5   0.0    1.5  1  TIGR02657 amicyanin: amicyanin


Domain annotation for each model (and alignments):
>> TIGR02656  cyanin_plasto: plastocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.1   2.1e-34   2.1e-31       2      98 ..     182     276 ..     181     277 .] 0.95

  Alignments for each domain:
  == domain 1    score: 106.1 bits;  conditional E-value: 2.1e-34
   TIGR02656   2 evklGadkgalvfePaklsiaaGdtvkfvnnkvaPhnvvfdedkvpagakeeakslsekdllnspgesyevtlseaGtysfyCePhrgaGmvGkitv 98 
                 +v +G+++g+lvfePak ++ +Gd+v++v  k+ Phnvvfded++p g+++ea s+  +  l + ge+++ +++ aG+y +yCePhr+aGmvG+++v
  MMETSP1174-20130828|3430_1 182 TVMMGTESGQLVFEPAKTKLCKGDSVSWVIVKGGPHNVVFDEDNIPGGTSQEALSM--DGQLGEEGETFTKQFDVAGNYGYYCEPHRSAGMVGELVV 276
                 799*******************************************9998777666..778999******************************998 PP

>> TIGR03102  halo_cynanin: halocyanin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.3   7.4e-17   7.5e-14      22     114 ..     179     276 ..     173     277 .] 0.81

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 7.4e-17
   TIGR03102  22 devtvevGveanggafafdPaavrvdagttvvweWtGeGgghnvvseed....g....dleeservseeGttyeqtfeeegialyvCvphkalgmkGavvv 114
                 ++ tv +G  +++g++ f+Pa  ++ +g  v w    +Gg+hnvv +ed    g     l+   +  eeG t+++ f+ +g + y C ph++ gm+G +vv
  MMETSP1174-20130828|3430_1 179 ETKTVMMG--TESGQLVFEPAKTKLCKGDSVSWVI-VKGGPHNVVFDEDnipgGtsqeALSMDGQLGEEGETFTKQFDVAGNYGYYCEPHRSAGMVGELVV 276
                 56678889..88999******************86.59*******99873332211111223345679******************************998 PP

>> TIGR02375  pseudoazurin: pseudoazurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   5.8e-13   5.9e-10       5      86 ..     187     276 ..     183     277 .] 0.77

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 5.8e-13
   TIGR02375   5 gaegamvFePayikaapGDtvkFvptdkg.hnvetikgmlPeg....aekfkskinee...ltvkltkeGvygvkctphygmgmvaliqv 86 
                 +++g  vFePa  k+ +GD+v +v +  g hnv   ++ +P g    a ++ ++++ee   +t +++  G yg+ c+ph + gmv+ ++v
  MMETSP1174-20130828|3430_1 187 TESGQLVFEPAKTKLCKGDSVSWVIVKGGpHNVVFDEDNIPGGtsqeALSMDGQLGEEgetFTKQFDVAGNYGYYCEPHRSAGMVGELVV 276
                 57899******************988766688876666666551111556667665543228999********************98877 PP

>> TIGR02657  amicyanin: amicyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.1e-10   3.2e-07       7      82 ..     193     276 ..     188     277 .] 0.79

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.1e-10
   TIGR02657   7 kyetpelrvkvgdavtwinrealphnvhfka.....gvlvek.dlkgpmlkkeqayslkfteagtydyictphpf..mkgkvvv 82 
                  +e  + ++  gd+v+w+  +  phnv f       g+  e+ +++g +  + ++++ +f+ ag y y+c ph    m g +vv
  MMETSP1174-20130828|3430_1 193 VFEPAKTKLCKGDSVSWVIVKGGPHNVVFDEdnipgGTSQEAlSMDGQLGEEGETFTKQFDVAGNYGYYCEPHRSagMVGELVV 276
                 57777888999*****************97422232555555467999999**********************63237777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 914.02
//
Query:       MMETSP1174-20130828|3431_1  [L=938]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.70
# Mc/sec: 1768.65
//
Query:       MMETSP1174-20130828|3432_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-09   35.1  23.7    1.8e-06   25.9   7.2    2.2  2  TIGR00880 2_A_01_02: multidrug resistance protein
    4.3e-07   26.9   3.8    9.9e-07   25.7   2.6    1.6  1  TIGR00898 2A0119: cation transport protein
    9.2e-07   25.9   3.5    1.8e-06   24.9   2.4    1.5  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      5e-06   23.6   5.9    6.5e-06   23.3   4.1    1.3  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.4e-05   22.2   5.6    1.4e-05   22.2   3.9    2.0  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
  ------ inclusion threshold ------
      0.014   12.1  17.3      0.016   12.0  10.1    2.3  2  TIGR00893 2A0114: D-galactonate transporter
      0.019   10.7   4.0      0.029   10.0   2.8    1.3  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
      0.071    9.8  15.4     0.0016   15.2   5.6    1.9  2  TIGR00890 2A0111: oxalate/formate antiporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   7.2   3.6e-09   1.8e-06       3     139 ..      29     163 ..      27     165 .. 0.89
   2 !   15.1   3.7     8e-06    0.0041      13     137 ..     249     379 ..     239     382 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 3.6e-09
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllp 139
                  l +yA +    +p++gl++d++Gr+  + ++l++ ++  + +   ++  +l+++r++ G++a+  l +  a++adi  +   rs  ++++ ++ a++ i ++ l   +++ +    ++++ ++  l+a+++ lf+++
  MMETSP1174-20130828|3432_1  29 TLSAYAFAKCGSAPFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFANGGLLT--AYAADIGHSMgDRSTLFSYFITAWAFARITAAWLFIKMGEKVRY-CCLFATGCEILAATLTYLFFFK 163
                 678999999999***************************************************988865..699***88777***********************9999999666.6666777777777777777776 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 8e-06
   TIGR00880  13 vvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee..ersv...algllsagialgpilGpllGavla.qalgwralflilallallafilllfl 137
                  + pls +lt r+G+ +  +    + +l  ++++ +s +  l+ + +l +  +a+  +++++++ d ++++  +r++     gl  ++  ++ +lG + G++la   ++w +l  +++ la +++i ++++
  MMETSP1174-20130828|3432_1 249 PLTPLSYILTRRLGYANAAVACAGFSALCWVAMTQASGMRELYTMVFLRSAVHAVYEPSVKSIMMDSADRRhlKREHlgsFAGLQQSMKGAAQVLGSFWGSFLAsYSSQWPVLWSAVISLANASIIYQFCV 379
                 4679****************9999999***************************************999874333331113455566777899***********545567777777777777777777766 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   2.6   1.9e-09   9.9e-07     141     201 ..      39      99 ..      22     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.9e-09
   TIGR00898 141 lGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvval 201
                  ++ ++G +sD++GR++ ++++ lvta+  + t +  +++ +l+ r+ +G++  g  ++a+
  MMETSP1174-20130828|3432_1  39 GSAPFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFANGGLLTAY 99 
                 58899***********************************************999877765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.4   3.6e-09   1.8e-06      70     188 ..      42     159 ..      18     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.6e-09
   TIGR00895  70 llfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGl.GgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllll 188
                  ++g ++D++gR+  +++++l+ +++   +++ t+ ++Ll+ Rf++gl   Ggll +  a +   +++  r+t+ ++++  +a   ++++ l   +  +  +  lf+ g  i +  l  l
  MMETSP1174-20130828|3432_1  42 PFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFAnGGLLTAYAADIGHSMGD--RSTLFSYFITAWAFARITAAWLFIKMGEKVRYCCLFATGCEILAATLTYL 159
                 589********************************************954277766666666655555..68999999999999999999998888888888888888864443333333 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   4.1   1.3e-08   6.5e-06      51     197 ..      28     173 ..      18     295 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.3e-08
   TIGR00891  51 fllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLffls..ilpiilalflrkrvpeaevwkek 197
                   lsa  + +   a ++Gl++D+ gr+ ++  ++ + ++  ++++++ +++ ll  r+ +G+   G   +a a  i +     rs l  ++i ++a+  + aa ++  +++     + +Lf  +  il + l+ ++  + pe +++ + 
  MMETSP1174-20130828|3432_1  28 ITLSAYAFAKCGSAPFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFANGGLLTAYAADIGHS-MGDRSTLFSYFITAWAFARITAAWLFIKMGEKVR--YCCLFATGceILAATLTYLFFFKPPEKKMHGKS 173
                 55666667777778899********************************************988886666666666554.56688888899***********998888777666..667775433377777777777777777766655 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   3.9   2.7e-08   1.4e-05      38     177 ..      28     167 ..      14     187 .. 0.80
   2 ?    0.1   0.4      0.13        67      70     161 ..     274     368 ..     260     423 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.7e-08
   TIGR00881  38 afsiaYgiskf....vvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqs 177
                     aY+++k      +g++sD+ + + ++ + L+ +ai+    g+ +s ++l++ ++++Glf   g  +++       s  +r t+++ + ++  ++ + ++    l i++  + +   +++  + i+ + +  l+  ++p++
  MMETSP1174-20130828|3432_1  28 ITLSAYAFAKCgsapFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFANGGLLTAY-AADIGHSMGDRSTLFSYFITAWAFARITAA---WLFIKMGEKVRYCCLFATGCEILAATLTYLFFFKPPEK 167
                 45567777775444479**********************************************999999999.677778999****************99999...45566666666666666666776666655554444443 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.13
   TIGR00881  70 vaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrs..erGtvvaiwnishnvggallpplvllaiall..lswhvvfivpgiiai 161
                 +a++ + +  +s++  l  +++l   + ++  p +++++    +r+  +r  + ++    + + ga +  l  ++  +l  +s ++  + +++i +
  MMETSP1174-20130828|3432_1 274 SALCWVAMTQASGMRELYTMVFLRSAVHAVYEPSVKSIMMDSADRRhlKREHLGSFAGLQQSMKGAAQV-LGSFWGSFLasYSSQWPVLWSAVISL 368
                 588889999999999999999999999999999999988776665523344444444444444444444.33333333200222222333333332 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  10.1   3.1e-05     0.016      27     231 ..      22     218 ..      16     296 .. 0.75
   2 ?   -2.0   1.3      0.53   2.7e+02      33      95 ..     236     300 ..     226     379 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.1e-05
   TIGR00893  27 saaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGla.EaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnill 231
                  a  y +  sa++++        gl+ d++G ++t++  +++ ++ +  +++ t+++sl++ R+ +Gl+  ++l  + +           r+t  s+f+ a a++ i ++ l + +  ++++  +F       i+ + l + +  ++pek+   k   +++++   ++      ++ + +a+++e+L+dr v +l++ + l++ + 
  MMETSP1174-20130828|3432_1  22 AAYLYAITLSAYAFAKCGSAPFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFaNGGLLTAYAAD--IGHSMGDRSTLFSYFITAWAFARITAAWLFIKMGEKVRYCCLFA--TGCEILAATLTYLFFFKPPEKKMHGKSLMDKVMSPL-AII----RDRPSLRAAFREMLRDRLVALLFITSLLSPRID 218
                 5556778889999999888999*********************************************98677777766543..3457899****************998887777666666666664..455677777777777777775555555455555444.333....34557899999*****99999999988876655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.53
   TIGR00893  33 lvfsafsigyvlfql.pgglll.driGakktlavaivlWglftll..qafat..alvslivlRvllGla 95 
                 ++ ++ s+  +++ l p +++l +r+G    +a a+v  + f++l  +a+ +  ++ +l+++ +l  + 
  MMETSP1174-20130828|3432_1 236 YIKAIESVTVIIMPLtPLSYILtRRLG----YANAAVACAGFSALcwVAMTQasGMRELYTMVFLRSAV 300
                 444444444444444433333303333....22222222222221101111122444444444444444 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.8   5.7e-05     0.029     219     308 ..      41     129 ..      28     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.7e-05
   TIGR01299 219 aflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaev.larekrgehlswlcmfwmiggvyaa 308
                 a + g ++d+lgr+ ++  +l v ++  f + +   +  +llcr+++g+   g + +  +y a++  +   r   +s++   w    + aa
  MMETSP1174-20130828|3432_1  41 APFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWISLLLCRFFTGLFANGGLLT--AYAADIgHSMGDRSTLFSYFITAWAFARITAA 129
                 5688999*****************************************988887655..45555522445666677777777776666554 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   5.6   3.2e-06    0.0016     242     355 ..      26     136 ..      12     156 .. 0.75
   2 ?   -2.2   0.4      0.65   3.3e+02     321     321 ..     318     318 ..     256     374 .. 0.54

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.2e-06
   TIGR00890 242 lvlavsissllngggRlvlGavsDkigrlktmsivlsisavlllslllikkisdvlflAlvalvaftiGgtfslfpslvskifgkknsaanyGllytakavagilggliaslvl 355
                  ++  s + ++  g+ +++G +sD++gr+ t++ +l + a+ l++     +  + l l   +   f+ Gg+++ +    ++  g +  +  +  + ta a a i ++ ++  + 
  MMETSP1174-20130828|3432_1  26 YAITLSAYAFAKCGSAPFMGLISDQLGRQTTITFTLLVTAICLFTTGYCTSWIS-LLLCRFFTGLFANGGLLTAYAADIGHSMGDR--STLFSYFITAWAFARITAAWLFIKMG 136
                 567889999**********************************99999887666.6777777777888999999987777666655..44455566777777777766655554 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.65
   TIGR00890 321 s 321
                  
  MMETSP1174-20130828|3432_1 318 R 318
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1137.14
//
Query:       MMETSP1174-20130828|3434_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1247.90
//
Query:       MMETSP1174-20130828|3435_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.4   0.0       0.13    9.9   0.0    1.7  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.27   1.1e+03      37      52 ..     234     249 ..     221     271 .. 0.71
   2 ?    9.9   0.0   3.2e-05      0.13      35      63 ..     329     357 ..     311     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.27
   TIGR01855  37 adklvlPGVGafkeam 52 
                 + + + PG Ga+++a 
  MMETSP1174-20130828|3435_1 234 MGQSIAPGPGAYDAAD 249
                 5566889999998763 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 3.2e-05
   TIGR01855  35 ekadklvlPGVGafkeamkklrelelell 63 
                 +k+++l++PG Ga++++m++ + ++ ++ 
  MMETSP1174-20130828|3435_1 329 HKIERLIVPGPGAYEDGMQSANSSKSNMS 357
                 57899***************999885444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.50
# Mc/sec: 1169.42
//
Query:       MMETSP1174-20130828|3436_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1138.41
//
Query:       MMETSP1174-20130828|3439_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 402.57
//
Query:       MMETSP1174-20130828|3440_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|3441_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.2   0.1    1.5e-11   41.7   0.1    1.2  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
  ------ inclusion threshold ------
      0.012   12.6   0.1       0.71    6.7   0.0    2.8  3  TIGR03722 arch_KAE1: universal archaeal protein Kae1


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   7.5e-15   1.5e-11      52     255 ..     130     333 ..     119     334 .] 0.76

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 7.5e-15
   TIGR00747  52 sslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDl..sAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDR.gtcv...lFgDGagavvvgeseeegeilsvelgadgekgellrlp.aaekraekekeekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRi 255
                   l +e +kkAi++A+l+++di  ++v   +  ++ P   + + +++g+   +   l    +Ca  + ++ v+ +y +s   k +Lv  +e  s  + ++D  + ++   +F+DG +a+v+g  + +     +  +a  +++  l+   ++ ++ +    ++    +   k + ++ +++++  v++ l++ ++kked+d+   H    Ri
  MMETSP1174-20130828|3441_1 130 VPLVTEVCKKAIKDAGLNVEDIGKLVVVSST-GFIGPGLDCHIIQEVGLSRGVDRALigFMGCAAAMNGFRVGMDYCRSH-EKAALVCCVEISSVHTTFDDNiNDAIlhaIFADGCAAAVLGGRTAKT--APTGSFAIVDDHAWLMEGtEDGITLS---INETGISCKLSKYLPQYIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRI 333
                 5578999***************999887655.6789************99866444411578999999999*******96.578999999999988877775233442337**********9877555..55555555555666655503333333...4444444555688999**************************9999888887 PP

>> TIGR03722  arch_KAE1: universal archaeal protein Kae1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.014        29     186     217 ..       6      37 ..       2      63 .. 0.80
   2 ?    6.7   0.0   0.00035      0.71      50     109 ..     133     193 ..     125     220 .. 0.86
   3 ?    0.3   0.0     0.031        63       7      75 ..     255     328 ..     249     330 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.014
   TIGR03722 186 ielPyvvkGmdlsfsGlltaalralkkgakle 217
                 +elPy v G  +++s  l +  +++ +++++ 
  MMETSP1174-20130828|3441_1   6 VELPYLVAGAAVALSTYLMMQPNKAATKEEVY 37 
                 89***********9987777666666655555 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00035
   TIGR03722  50 ikkvlkealeeakvsledid.avafsqGPGlgPaLrvvataaraLalklekplvgvnhava 109
                 +++v k+a+++a++++edi  +v +s+   +gP L         L+  ++  l+g   + a
  MMETSP1174-20130828|3441_1 133 VTEVCKKAIKDAGLNVEDIGkLVVVSSTGFIGPGLDCHIIQEVGLSRGVDRALIGFMGCAA 193
                 68999**************725666777679****99999999999999999999877766 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.031
   TIGR03722   7 tahtlgvgivdeekeilan..vkktyvpekgGihPr...eaaehhaeaikkvlkealeeakvsledidavafsq 75 
                 ta t + +ivd+++ ++       t+  ++ Gi  +      ++ a++++  + + l + +++ ed+d  a+  
  MMETSP1174-20130828|3441_1 255 TAPTGSFAIVDDHAWLMEGteDGITLSINETGISCKlskYLPQYIAKNMAGYVDSFLAKHDMKKEDVDFWAVHP 328
                 77777888888776665431144567778889986511145789999999999***************988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 979.65
//
Query:       MMETSP1174-20130828|3443_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 350.81
//
Query:       MMETSP1174-20130828|3442_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   11.2   1.8       0.19   10.1   1.3    1.6  1  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3   4.7e-05      0.19      33      73 ..     289     329 ..     278     335 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.7e-05
   TIGR01601  33 nksicgskeinrsnekndieskseiqLnnnnpkddeddkdn 73 
                 +ks + +k+i  +++k  +e k  + L  + +++dedd d+
  MMETSP1174-20130828|3442_1 289 DKSFKRMKKISIEERKAAVEAKRATLLAEQEEDEDEDDDDE 329
                 689999*********************99999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 961.22
//
Query:       MMETSP1174-20130828|3445_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31    6.8   7.1       0.37    6.5   4.9    1.1  1  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family


Domain annotation for each model (and alignments):
>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.9   9.1e-05      0.37      40     151 ..      13     124 ..       2     150 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 9.1e-05
   TIGR00921  40 elyksykllqkelG.vstesllvlikgdDvkdeevlealrrleqrlrekeyVtkvvsaadilkqilgasklpksesevrevlselpeeae.llvkdetlaliivqlesekdskq 151
                 ++ ++ ++ + e+  +  e+l ++++  +   +  +e  +rl+  ++eke  + v +aad+l + +      ++ ++v+e+ +  + e+    +++e + +i v++++ ++s q
  MMETSP1174-20130828|3445_1  13 KAQQEDHTSNMETMeSKHEKLTIMVEKFEESFQRKYEISERLQMSIEEKETMDAVKAAADVLCHKQVE--DVNDIQKVQEIFEAKEAEMPkTQSLKECMIVIAVEVKTLQESVQ 124
                 555555666666654556889999998887888889999***********************888774..67889999999998888776688888888888888888766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       727  (0.177231); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 567.27
//
Query:       MMETSP1174-20130828|3452_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 291.98
//
Query:       MMETSP1174-20130828|3451_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 388.63
//
Query:       MMETSP1174-20130828|3459_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 953.62
//
Query:       MMETSP1174-20130828|3464_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.82
# Mc/sec: 774.23
//
Query:       MMETSP1174-20130828|3466_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 382.77
//
Query:       MMETSP1174-20130828|3468_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 362.32
//
Query:       MMETSP1174-20130828|3470_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1032.22
//
Query:       MMETSP1174-20130828|3479_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-11   39.9   0.0    3.9e-11   39.7   0.0    1.1  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    4.9e-08   29.4   0.0      6e-08   29.1   0.0    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    2.7e-07   26.3   0.0    2.9e-07   26.2   0.0    1.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      6e-07   26.5   0.0    7.8e-07   26.1   0.0    1.1  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
      1e-06   25.7   0.0      1e-06   25.7   0.0    1.1  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    2.4e-05   20.8   0.0    2.7e-05   20.6   0.0    1.1  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    2.5e-05   21.0   0.0    3.3e-05   20.6   0.0    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    5.8e-05   18.9   0.0    6.7e-05   18.7   0.0    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    0.00059   15.8   0.1    0.00059   15.8   0.0    1.1  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit
     0.0015   14.2   0.0     0.0016   14.1   0.0    1.0  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
     0.0017   14.1   0.0     0.0019   13.9   0.0    1.0  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
      0.002   14.1   0.0     0.0022   13.9   0.0    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
     0.0026   13.2   0.0     0.0027   13.1   0.0    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.2e-13   3.9e-11     185     244 ..       8      78 ..       3      80 .] 0.75

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.2e-13
   TIGR01517 185 GdvvpaDgvlisGlklkiDessltGesdpikkgk.....ek......LlsGtkvlegsgrmlvtavGvnsv 244
                    +p+Dg+li+G  +kiDes++tGe  p+ k++     ++      +  Gt+v+ gsg mlvtavG+ s 
  MMETSP1174-20130828|3479_1   8 NAAIPVDGILIEGDGVKIDESAMTGEPLPVAKTPflpdeKDshthpfIHGGTEVKAGSGSMLVTAVGIYSA 78 
                 5689**********************9877765222211112222324578****************9885 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.9e-10     6e-08     122     178 ..       9      75 ..       3      77 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.9e-10
   TIGR01647 122 divpaDvklvegdklkvDqaaltGEslpvek..........klgdiaysgsvvkkGEveavvvatGv 178
                 +++p D  l+egd +k+D++a+tGE lpv k          ++   ++ g  vk G  +++v+a G+
  MMETSP1174-20130828|3479_1   9 AAIPVDGILIEGDGVKIDESAMTGEPLPVAKtpflpdekdsHTHPFIHGGTEVKAGSGSMLVTAVGI 75 
                 78***************************88333333222123334567899999999999999986 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   9.2e-10   2.9e-07     255     319 ..       3      60 ..       1      67 [. 0.76

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 9.2e-10
   TIGR01657 255 isrleekllpcDavLlegs.civnEsmltGEsvpvlKvpiee.eedsdeklqlkekskkhvLfgGTk 319
                 ++   + ++p+D +L+eg+ + ++Es +tGE  pv K+p    e+         +++ + +++gGT+
  MMETSP1174-20130828|3479_1   3 FNSHTNAAIPVDGILIEGDgVKIDESAMTGEPLPVAKTPFLPdEK---------DSHTHPFIHGGTE 60 
                 55567889**********9456*****************763023.........3445566666666 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.5e-09   7.8e-07      85     116 ..       8      40 ..       5      43 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.5e-09
   TIGR01525  85 GekipvDGevieges.evDesllTGEslpvekk 116
                    ipvDG +ieg + ++Des++TGE+lpv+k+
  MMETSP1174-20130828|3479_1   8 NAAIPVDGILIEGDGvKIDESAMTGEPLPVAKT 40 
                 568***********946*************997 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.3e-09     1e-06     104     136 ..       7      40 ..       2      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3.3e-09
   TIGR01511 104 pgekipvDGvvveGes.evdeslltGEslpvkkk 136
                 +   ipvDG+++eG++ ++des++tGE+lpv+k+
  MMETSP1174-20130828|3479_1   7 TNAAIPVDGILIEGDGvKIDESAMTGEPLPVAKT 40 
                 6788**********9758*************997 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.6e-08   2.7e-05      62      94 ..       7      40 ..       5      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.6e-08
   TIGR01494 62 kgekvpaDgvllsgs.aevdessLtGEsnpvekk 94
                ++ ++p+Dg+l++g+ +++des++tGE  pv k+
  MMETSP1174-20130828|3479_1  7 TNAAIPVDGILIEGDgVKIDESAMTGEPLPVAKT 40
                6789*********97589*************997 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   3.3e-05      81     111 ..       9      40 ..       5      43 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1e-07
   TIGR01512  81 ervPvDGevlsges.sldesalTGEsvpveka 111
                  ++PvDG +++g + ++desa+TGE++pv+k 
  MMETSP1174-20130828|3479_1   9 AAIPVDGILIEGDGvKIDESAMTGEPLPVAKT 40 
                 68*********99846*************986 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.1e-07   6.7e-05     148     212 ..      10      75 ..       4      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.1e-07
   TIGR01522 148 rvpadlriveavdlsidesnltGettpvkkss.eaiealaersniaymGtlvreGkgkGivvgtGs 212
                  +p d  ++e   ++ides++tGe  pv k+   + e+ ++     + Gt v+ G g  +v + G 
  MMETSP1174-20130828|3479_1  10 AIPVDGILIEGDGVKIDESAMTGEPLPVAKTPfLPDEKDSHTHPFIHGGTEVKAGSGSMLVTAVGI 75 
                 5999**************************972467777778888999************999986 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-06   0.00059     137     167 ..      10      41 ..       4      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.9e-06
   TIGR01497 137 vipadGevieG.vasvdesaitGesapvlkes 167
                  ip dG +ieG +  +desa+tGe  pv k +
  MMETSP1174-20130828|3479_1  10 AIPVDGILIEGdGVKIDESAMTGEPLPVAKTP 41 
                 69********95578*************9865 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.2e-06    0.0016     171     236 ..       9      74 ..       2      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.2e-06
   TIGR01106 171 dripadlriisakglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstg 236
                   ip+d  +i+ +g+k+d+s++tge  p +++p + +e+   t+      t++  g    +v ++g
  MMETSP1174-20130828|3479_1   9 AAIPVDGILIEGDGVKIDESAMTGEPLPVAKTPFLPDEKDSHTHPFIHGGTEVKAGSGSMLVTAVG 74 
                 579******************************999999999998888888777777776666655 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.1e-06    0.0019     162     229 ..      10      74 ..       3      78 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.1e-06
   TIGR01524 162 lipadvrviaardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatG 229
                  ip d  +i+   + i +sa+tGe lpv k     + kd++   ++ ++  Gt+v +G +  +v a G
  MMETSP1174-20130828|3479_1  10 AIPVDGILIEGDGVKIDESAMTGEPLPVAKTPFLPDEKDSH---THPFIHGGTEVKAGSGSMLVTAVG 74 
                 59*****************************9999988775...5778999**********9999988 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     7e-06    0.0022      91     159 ..      10      75 ..       4      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7e-06
   TIGR01116  91 kvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGv 159
                  +p d  l e   +k+d+s +tGe  +v k+   +++ek++      +++ Gt v aG    +v++ G+
  MMETSP1174-20130828|3479_1  10 AIPVDGILIEGDGVKIDESAMTGEPLPVAKT-PFLPDEKDSHTH--PFIHGGTEVKAGSGSMLVTAVGI 75 
                 689999999999****************995.678888887766..9***************9999987 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.7e-06    0.0027     147     181 ..       8      42 ..       3      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.7e-06
   TIGR01523 147 gdvvpadlrlvetknfetdealltgeslpvikdan 181
                   ++p d  l+e    + de+ +tge lpv+k   
  MMETSP1174-20130828|3479_1   8 NAAIPVDGILIEGDGVKIDESAMTGEPLPVAKTPF 42 
                 5689**************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 251.41
//
Query:       MMETSP1174-20130828|3476_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.70
# Mc/sec: 1284.07
//
Query:       MMETSP1174-20130828|3478_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       651  (0.158703); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1058.72
//
Query:       MMETSP1174-20130828|3480_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-210  699.2   0.0   1.2e-210  698.9   0.0    1.1  1  TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
    1.5e-90  302.3   0.0    2.2e-90  301.8   0.0    1.1  1  TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
    1.4e-67  226.3   0.0    4.8e-57  191.5   0.0    3.1  2  TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
    1.2e-65  219.9   0.1    1.7e-24   84.1   0.0    3.6  4  TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
    2.2e-06   23.9   0.2    2.7e-05   20.4   0.0    2.0  2  TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent


Domain annotation for each model (and alignments):
>> TIGR02506  NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  698.9   0.0  1.5e-213  1.2e-210       1     616 []     137     747 ..     137     747 .. 0.97

  Alignments for each domain:
  == domain 1    score: 698.9 bits;  conditional E-value: 1.5e-213
   TIGR02506   1 yaGlkellnryllrkaakkallelpqeaymrvalalasleeketaladaikfyellsrlkislatpvlanagtkksqlaSCfLleveddelesiskaikevaklskkggGiGlnlsklratgskirgsenkskgiipvlklldssveavnqg.gkRpgavavylevwHpdieefLelkknngeeerraknlfiglvipdlfmkrveedkdwtLfspqdvpeleelygeefeeeYerlekekeakkkikvsarelmkkilksavetGepYilfkdavN.khnpnklkgeaikmSNLCtEivqptdeeeevavCnLasvnlanfvlekee.............fdfekleeavqlavraldnvidlqnyptaeaaksnkrrrsiGiGvmgladvlaklglsYeseearalnkrifeaiyyaaikaSveLAkekGafegFeeskyakGllhidtwektieeleeakteedWeaLrekikeyGlrnsqllAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeldqealiklaaarqkfvdqsiSlnlfleeekevtakkllkllllAwkkGlKT.mYYlrvk 616
                 y+G+k+l+++yll+   +  + e+pq+++mrval+++      ++l+ a+++y+++s+  +++atp+l+n+g++++q++SCfLl+++ d++e i++++k++a +sk +gGiGl + ++ratgs irgs+++s+giip+l+++++++++v+qg gkR+g++a+yle+wH+di+efL+l+kn+g+e++ra++lf++l+ipdlfmkrve++ +w+Lf+p+++p+l++++g+efe  Y+++e+e +a+k+  ++a +l++++l+s+vetG+pY+l+kd +N k+n+++   ++ik SNLCtEi+++t ++ e+avCnLas+nl+ fv+ k +             fdf++l+e+ ++++r+l++vid+++yp++ea++sn+r+r++G+Gv+glad++  +++++es+ear+lnk+ife+iy+ a+++SveLA   G+++++e+s +++Gll++d w    +       + dW  L++k++++Glrns llA +Ptas++q+ g++e+ieP++sn+++++ ++g+f +vNk+L+k+l +++lw+ e++++++ ++gs+q+i+ i+++lke ykt +e++q+ ++++aa+r  f++qs+S+n+ l++   +t  kl++++++AwkkGlKT mYYlr++
  MMETSP1174-20130828|3480_1 137 YFGFKTLERSYLLKVDGT--TAERPQHMIMRVALGIHK-----QDLESAFETYNYMSQKYFTHATPTLFNSGMPRPQMSSCFLLTMKSDSIEGIYDTLKSCASISKYAGGIGLAMHNIRATGSYIRGSNGESNGIIPMLRVFNETARYVDQGgGKRKGSFAMYLEPWHADIFEFLDLRKNHGQEHERARDLFYALWIPDLFMKRVETNGTWSLFCPNEAPGLSDVWGDEFEALYAKYEEEGRARKT--INAHQLWFAVLTSQVETGTPYMLYKDSCNrKSNQRN--LGTIKSSNLCTEIIEYTAPD-EIAVCNLASLNLSIFVNTKGSngnmsggsttdpvFDFARLKEVTKVVIRNLNKVIDNSFYPVEEARHSNMRHRPVGLGVQGLADAFCLMRFAFESPEARQLNKDIFETIYFGAVESSVELAAIDGPYSTYEGSPASEGLLQYDLWGVVPS------DRWDWAGLKAKMATSGLRNSLLLAPMPTASTAQILGNNEAIEPFTSNMYNRRVLAGDFPVVNKHLLKDLIDRKLWTSEVRNQMMGDQGSVQNIAVIPKDLKELYKTVWEIKQRVVLDMAADRGAFICQSQSTNVHLAD---PTPGKLTSMHFYAWKKGLKTgMYYLRSR 747
                 79*********9977766..68***********96655.....5799***************************************9999*************************************************************999******************************************************************************************99..*****************************7777777..56******************.8*************99998889****************************************************************************************************************************7555......4589**************************************************************************************************************************************...**************************96 PP

>> TIGR02504  NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.8   0.0   2.7e-93   2.2e-90       5     593 ..     143     740 ..     140     751 .. 0.89

  Alignments for each domain:
  == domain 1    score: 301.8 bits;  conditional E-value: 2.7e-93
   TIGR02504   5 learyllkdedgeilespedlfrrvaealaaaeakeeseeleelaeefeellvelkfvpnsptlmnaagtelgqlsacfvlpve.ddlesIleaakeaaeifksGgGvGynfSelRpkgdvvrgtgGvaSGpvsfmrlfdsvtevvkqgg.kRRGAqmgilevdHPDieeFIeaKkkeeklaeaklqnfNiSVgvtdeFmeavekddeeyklenprtgeeeeelk..............vkvekevpareLwdkiveaAwksaePGllfldtiNrenpeakkallerinatNPCgEqpll....pyesCnLgsinLakfvkedad...........aefdleelaeavelatrflDnvidlnkfpleeieeaakktRriGLGimgladlLiklgipYdSeeavelaeevmevlaeeaykaSaelAkerGafplyekskeeeakvlrk...kkalpkeleelierkkleekaekygiRNaalttiAPTGtiSllagtssGiEPvFalvykrkvavggeellevneeveealrekglyekeeelvkevaeegmsveglpevpeelkkvfvtasdvspedHvrmqaavqkwvdsaiSKTiNlpsdatvedveavYllawklglKGi 593
                 le+ yllk  dg++ e p++++ rva ++ +++ +        +a e ++++++++f  ++ptl+n +g  + q+s+cf l+++ d++e I++++k+ a i k  gG+G++  ++R+ g+++rg++G++ G +  +r+f++++  v qgg kR+G   + le +H Di eF++ +k++++   +  +   +   + d Fm+ ve +  +++l  p ++   + +                  +k+++a++Lw ++ ++  +++ P +l+ d  Nr+++   ++ l++i+++N C E+  +    +  +CnL+s+nL+ fv+++ +             fd+ +l+e+ ++++r l++vid + +p+ee ++ + + R +GLG+ glad+ + + + ++S+ea++l + ++e+++  a+++S+elA+  G+++ ye s + e  +  +       p + ++++    l+ k++  g+RN+ l++  PT ++  + g    iEP  + +y r+v  g  ++ +vn+++ + l +++l++   e+ ++++  ++sv+++  +p++lk+++ t  +++++  ++m a    ++ ++ S  + l +d t+ ++ ++ ++awk+glK  
  MMETSP1174-20130828|3480_1 143 LERSYLLK-VDGTTAERPQHMIMRVALGIHKQDLE--------SAFETYNYMSQKYFTHATPTLFN-SGMPRPQMSSCFLLTMKsDSIEGIYDTLKSCASISKYAGGIGLAMHNIRATGSYIRGSNGESNGIIPMLRVFNETARYVDQGGgKRKGSFAMYLEPWHADIFEFLDLRKNHGQEH-ERARDLFYALWIPDLFMKRVETN-GTWSLFCPNEAPGLSDVWgdefealyakyeeeGRARKTINAHQLWFAVLTSQVETGTPYMLYKDSCNRKSN---QRNLGTIKSSNLCTEIIEYtapdEIAVCNLASLNLSIFVNTKGSngnmsggsttdPVFDFARLKEVTKVVIRNLNKVIDNSFYPVEEARHSNMRHRPVGLGVQGLADAFCLMRFAFESPEARQLNKDIFETIYFGAVESSVELAAIDGPYSTYEGSPASEGLL--QydlWGVVPSDRWDWAG---LKAKMATSGLRNSLLLAPMPTASTAQILGNNEAIEPFTSNMYNRRVLAG--DFPVVNKHLLKDLIDRKLWT--SEVRNQMMGDQGSVQNIAVIPKDLKELYKTVWEIKQRVVLDMAADRGAFICQSQSTNVHL-ADPTPGKLTSMHFYAWKKGLKTG 740
                 66666555.56889*****************9973........357899*****************.**************997467778***********************************************************99**************************99955.778888899*************5.6666666666655554445666666666666555789******************************9995...3569***********876533224569*************99889**********9****************************************************************************************************5554433..32232234444444444...5779999*****************************************9..7************9999998..89*****************************************************99999.57899***************965 PP

>> TIGR04170  RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   0.0   5.9e-60   4.8e-57      76     597 ..     126     633 ..      71     638 .. 0.84
   2 !   26.9   0.0   3.6e-10     3e-07     608     684 ..     674     750 ..     657     761 .. 0.87

  Alignments for each domain:
  == domain 1    score: 191.5 bits;  conditional E-value: 5.9e-60
   TIGR04170  76 keakakkfrfksflsaykfykdyalktndgkkyledyedrvalvaltladGdeekakdlvdeiieqryqPatPtflnaGkkrrGelvscfllrve.dnlesigrainsalqlskiGGGvalllsklreaGaaikkienaasGvvpvmklledafsyanql.GqrqGaGavylnifhpdilefldtkkenadekvrvktlslGvviPdkffelakenedlylfsPyd...vekeyGkplddidltekydelvaderirkkkinarelleklaelqlesGyPyimfedtvnkana..iegkikmsnlcseilqvseaslynddleedeigkdiscnl........GslnivnvmespdfektvetavraltavsdesdiksvPsvkkgnseahaiGlGamnlhgylarekiaygseeavdftniyfmlvnyyalrrsneiakerGetfkdfeksdyasGeyfdkyvsqefaPktekvkelfegiaiPtaedwaelkdkveeeGlynqyrlavaPtgsisyindstssihPivekieerk 597
                   +++++f f+  ++     ++y lk  dg+   e+ ++ ++ val + + d e a +  + + ++ +  atPt++n+G   r ++ scfll ++ d++e i  + +s+  +sk  GG++l++ ++r+ G  i++ +++++G++p++++++++ +y +q  G+r+G+ a+yl+ +h di efld +k    e+ r + l   + iPd f++    n    lf P +   ++ ++G +++       y +  ++ r rk  ina +l   + + q+e+G Py++++d+ n+     + g ik snlc+ei+    + ++    + ++++  i  n         G      v +   +++  ++ +r l  v d+s    v   +++n + + +GlG+ +l   ++  + a++s+ea+++ +  f ++ + a+++s e+a   G  ++ +e s  ++G    +y+                 +    + dwa lk+k++ +Gl n+ +la  Pt s + i     +i P ++++ +r+
  MMETSP1174-20130828|3480_1 126 TIIYDRDFVFDY-FGFKTLERSYLLKV-DGTT-AERPQHMIMRVALGIHKQDLESAFETYNYMSQKYFTHATPTLFNSGMP-RPQMSSCFLLTMKsDSIEGIYDTLKSCASISKYAGGIGLAMHNIRATGSYIRGSNGESNGIIPMLRVFNETARYVDQGgGKRKGSFAMYLEPWHADIFEFLDLRKNHGQEHERARDLFYALWIPDLFMKRVETNGTWSLFCPNEapgLSDVWGDEFEA-----LYAKYEEEGRARK-TINAHQLWFAVLTSQVETGTPYMLYKDSCNRKSNqrNLGTIKSSNLCTEIIEYTAPDEIAVC-NLASLNLSIFVNTkgsngnmsGGSTTDPVFDFARLKEVTKVVIRNLNKVIDNS-FYPVEEARHSNMRHRPVGLGVQGLADAFCLMRFAFESPEARQLNKDIFETIYFGAVESSVELAAIDG-PYSTYEGSPASEGLL--QYDLWG--------------VVPSDRWDWAGLKAKMATSGLRNSLLLAPMPTASTAQILGNNEAIEPFTSNMYNRR 633
                 467899999974.56556677898886.6654.6999999***************************************75.789*******995499*************************************************************7368*************************************************************9833346677776654.....5666656777665.69****************************97665789**************9998887643.3444444454443100000023333456788888999999***********97.5789999*********************************************************999.599999998887753..554433..............33345679999999999999999999999999999999999999999998887775 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 3.6e-10
   TIGR04170 608 apflaeenleyykdayeidaekvidlyaaitkhvdqGlsltlflkdtattrdlnrlqiyafkkGikt.lyyirlkqla 684
                 ++ ++++  e+yk  +ei ++ v+d+ a    ++ q  s+ ++l d  t   l  ++ ya+kkG+kt +yy+r + +a
  MMETSP1174-20130828|3480_1 674 IAVIPKDLKELYKTVWEIKQRVVLDMAADRGAFICQSQSTNVHLADP-TPGKLTSMHFYAWKKGLKTgMYYLRSRPKA 750
                 5678889999**********************************986.66789*************889****98655 PP

>> TIGR02510  NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.1   8.7e+02     165     180 ..      54      69 ..      53      79 .. 0.84
   2 !   67.9   0.0   1.7e-22   1.4e-19      21     206 ..     138     333 ..     117     340 .. 0.77
   3 !   63.1   0.0   4.5e-21   3.7e-18     214     378 ..     378     553 ..     361     565 .. 0.78
   4 !   84.1   0.0   2.1e-27   1.7e-24     388     548 ..     595     753 ..     585     762 .. 0.92

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.1
   TIGR02510 165 efagyvdvehpdleel 180
                 + a+y+  +hpd+  l
  MMETSP1174-20130828|3480_1  54 QTAAYMATQHPDFSML 69 
                 689*********9765 PP

  == domain 2    score: 67.9 bits;  conditional E-value: 1.7e-22
   TIGR02510  21 earsflrrgyllk..Gesveervreiaeraekldkve.gfeerffeylarGkyslatPvfanfGldrGlPiscaG.syvedsvedileaqaevgmlaknGgGtssylGdvrPrGadis.dngesngayalaslfdkvinvvsqget.rrGefagyvdvehpdleellsiql....endavqsllygvevgddwlek 206
                  +   l r+yllk  G++ e   + i + a + +k++ + +   ++y+ + +++ atP   n G+ r    sc+  +   ds+e i+++    + ++k  gG  + + ++r  G+ i+ +ngesng  ++ ++f++    v qg + r+G fa y++  h+d+ e+l++ +    e++  + l+y++ + d ++ +
  MMETSP1174-20130828|3480_1 138 FGFKTLERSYLLKvdGTTAERPQHMIMRVALGIHKQDlESAFETYNYMSQKYFTHATPTLFNSGMPRPQMSSCFLlTMKSDSIEGIYDTLKSCASISKYAGGIGLAMHNIRATGSYIRgSNGESNGIIPMLRVFNETARYVDQGGGkRKGSFAMYLEPWHADIFEFLDLRKnhgqEHERARDLFYALWIPDLFMKR 333
                 467789999998643666554444444433333332213344459****************************9636678*************************************9468******************9999876377*****************988751122567778889988888877765 PP

  == domain 3    score: 63.1 bits;  conditional E-value: 4.5e-21
   TIGR02510 214 krarWakllksraevGipyllfrdnanekaPqvikdkGidirasnlcteialPsdeeesfvcilsslnvllydeikd..........tdavetlvrf..ldsvldefiekakglay..leravrfaeraraiGlGvlGfhsylqsnrialesaeasllnaeiyktikeraeeasrelae 378
                  + +W  +l s++e+G py+l++d  n k+ q  +++G +i++snlctei+  + ++e  vc l+sln++ + + k           td v    r+  +  v+   ++k  + ++  +e a     r+r +GlGv G    +   r a+es+ea  ln +i++ti   a e+s ela 
  MMETSP1174-20130828|3480_1 378 AHQLWFAVLTSQVETGTPYMLYKDSCNRKSNQ--RNLG-TIKSSNLCTEIIEYTAPDEIAVCNLASLNLSIFVNTKGsngnmsggstTDPVFDFARLkeVTKVVIRNLNKVIDNSFypVEEARHSNMRHRPVGLGVQGLADAFCLMRFAFESPEARQLNKDIFETIYFGAVESSVELAA 553
                 5678***********************99887..8999.7********************************9988611111111113444333332112233333445544444434677877888*************************************************986 PP

  == domain 4    score: 84.1 bits;  conditional E-value: 2.1e-27
   TIGR02510 388 gkgrrnatllaiaPtkssalilGqvspsiePlvsnyfvqdsakakvvfknPvlekvlkekgkdeekvedeialhnGsvqhldfltdeeksvfktfaeisqmaiidlaaarqkhidqaqslnlvidadekeskdvnvlvveawkkglks.lyyqrseraakaf 548
                   g rn+ lla  Pt s+a ilG+  ++ieP++sn + +   +++++  n +l k l ++   +  v ++++  +Gsvq + ++  + k+++kt+ ei+q  ++d+aa r   i q+qs n+ +  d ++ k  +++  +awkkglk+ +yy+rs+  a a 
  MMETSP1174-20130828|3480_1 595 TSGLRNSLLLAPMPTASTAQILGN-NEAIEPFTSNMYNRRVLAGDFPVVNKHLLKDLIDRKLWTSEVRNQMMGDQGSVQNIAVIPKDLKELYKTVWEIKQRVVLDMAADRGAFICQSQSTNVHLA-DPTPGKLTSMH-FYAWKKGLKTgMYYLRSRPKADAI 753
                 6799*******************8.689*********************************************************************************************9885.47888877766.689******659*****9888775 PP

>> TIGR02505  RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.02        16     214     254 ..     244     284 ..     230     293 .. 0.88
   2 !   20.4   0.0   3.3e-08   2.7e-05     322     454 ..     362     520 ..     348     538 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.02
   TIGR02505 214 lSdvRpaGeklkgfGgtasGpvklaklltevaeiLskkagg 254
                 + ++R+ G  ++g  g ++G +++  ++ e a+   +  g+
  MMETSP1174-20130828|3480_1 244 MHNIRATGSYIRGSNGESNGIIPMLRVFNETARYVDQGGGK 284
                 678***************************99988766665 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 3.3e-08
   TIGR02505 322 alarskadlleteelkqerldlalsegkiengewlqtdss....ledageaeevkgtNPCgEIll....ankepCNLaevnllaieedke.................vdlerafklaarsvarlt.fsaledeksrevlaknrriGvsftGladflvla 454
                 ++a+ + + +  + +++++l  a    ++e g + +  +      +++++++ +k  N C EI      ++   CNLa +nl ++++ k+                   l+++ k++ r + +++ +s + +e  r +  + r +G+++ Glad + l 
  MMETSP1174-20130828|3480_1 362 LYAKYEEEGRARKTINAHQLWFAVLTSQVETGTPYMLYKDscnrKSNQRNLGTIKSSNLCTEIIEytapDEIAVCNLASLNLSIFVNTKGsngnmsggsttdpvfdfARLKEVTKVVIRNLNKVIdNSFYPVEEARHSNMRHRPVGLGVQGLADAFCLM 520
                 56777888888888999999999999999999998864430111355666667**********74332246679**************9999********99997777788888888877665542777899*********************977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.22s 00:00:00.93 Elapsed: 00:00:00.85
# Mc/sec: 1225.17
//
Query:       MMETSP1174-20130828|3482_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       315  (0.0767918); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|3483_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   12.9   0.0      0.011   12.9   0.0    1.1  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
       0.01   12.3   0.0       0.01   12.3   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      0.016   12.0   0.0      0.016   12.0   0.0    1.1  1  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
      0.022   12.3   0.0      0.022   12.3   0.0    1.1  1  TIGR00455 apsK: adenylylsulfate kinase


Domain annotation for each model (and alignments):
>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.011     143     168 ..       2      27 ..       1      37 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-05
   TIGR02782 143 GGtgsGkttLanallaeiaksapddr 168
                 G tg+Gk tLanal +  + ++p  r
  MMETSP1174-20130828|3483_1   2 GCTGAGKSTLANALHEYFSCTCPVVR 27 
                 78************999999988766 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05      0.01     368     401 ..       2      35 ..       1      49 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
   TIGR02868 368 GasGaGKstLlallaglldplkGevtldgvsvas 401
                 G +GaGKstL+++l   ++   + v ld+  v +
  MMETSP1174-20130828|3483_1   2 GCTGAGKSTLANALHEYFSCTCPVVRLDDFYVGE 35 
                 789******************9999999976655 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05     0.016     155     178 ..       1      24 [.       1      52 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.5e-05
   TIGR02525 155 cGetGsGkstllaaiyryiletnp 178
                 +G tG+Gkstl+ a+++y+  t p
  MMETSP1174-20130828|3483_1   1 GGCTGAGKSTLANALHEYFSCTCP 24 
                 699***************988876 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.2e-05     0.022      25      53 ..       2      29 ..       1      46 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-05
   TIGR00455 25 GlsgsGkstianalekkLeekglrvevLD 53
                G +g+Gkst+anal++ + +    v +LD
  MMETSP1174-20130828|3483_1  2 GCTGAGKSTLANALHEYF-SCTCPVVRLD 29
                889***********9865.4444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        73  (0.0177962); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|3484_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 577.07
//
Query:       MMETSP1174-20130828|3485_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|3492_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 481.12
//
Query:       MMETSP1174-20130828|3496_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1228.23
//
Query:       MMETSP1174-20130828|3497_1  [L=1132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-245  813.0   0.0   8.6e-245  812.8   0.0    1.0  1  TIGR00395 leuS_arch: leucine--tRNA ligase
    8.8e-40  134.3   0.0    1.5e-17   60.7   0.0    4.0  3  TIGR00422 valS: valine--tRNA ligase
    9.8e-26   88.0   0.0    5.6e-10   35.8   0.0    3.3  3  TIGR00392 ileS: isoleucine--tRNA ligase
    1.1e-20   71.2   0.1    1.8e-12   44.1   0.0    3.1  3  TIGR00396 leuS_bact: leucine--tRNA ligase
    4.6e-20   69.6   0.5    7.7e-10   35.9   0.0    3.3  3  TIGR00398 metG: methionine--tRNA ligase
    1.3e-07   28.9   0.0    2.1e-07   28.2   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  812.8   0.0  1.3e-247  8.6e-245       4     937 ..      68    1131 ..      65    1132 .] 0.87

  Alignments for each domain:
  == domain 1    score: 812.8 bits;  conditional E-value: 1.3e-247
   TIGR00395    4 ekkyqkrWeeekifead..pddre....kffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevha...........................................vPkeellkladpekiveyfsreaesalkslGysidWrrefkttd..evydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiveyilikfkledga...........lylvaatlrPetvyGvtnvfvnPeieyvive.vgdekfivskeaveklsyqklk..........lkvieevkgkqligkkvkaP.vvgkevpiLPaefvdaekatGvvlsvPahaPadyialkdLkrdeelle....ikdvvedielvplikvdk.....yG....dlpakeiveelgvksqkdkelLeeatkklykeeyakGvlienildykGikveeakekvkedlidkGladvyyefsekkvicrcGdkCvvkvledqWflkysdeeWkekalkclekmrli...peevkeafeekidWlkdkavarrkGLGtrlPwdekyliesLsdstiyqayytiaklln.kdelkae..........qltdelfdyifldkddvketkipleileklreefeyfyPldlrisakdLipnhLtfyifthvaifPe..efWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeia.kksd..levgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyr....rrsgenvkdvlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvrdikeiakiaaskp...kkvylltse...dWkvevlkvvkelesed.......vkeamkkvre....eeelrkrakevaelvkkilkdekked.......elliseievlkaaaefikkevgakkiies.......keisfpenkkrnavPlkPaiyl 937 
                  e + q++We    fe++   dd      kf++t +yPy+nG lh Gh++ +t++e+ a+++r+kg nvLfp+gfh+tG+Pi + a+k+k +  k    y + ++                                           +P+ el ++a+pek++eyf++   ++lks+G  idWrr+f tt   ++y++f+eWq+r+L++  +i++G++p  ++p+d++++ dhd+  Gegv ++ey+lik++++              ++l  atlrPet+yG+tn+fv Pe ey+ ++ ++++ +i+s++++ +l +q  k             i +vkg++l+g  ++aP   +  v  LP   +   k+tGvv+svP++aP+dy+alk+Lk ++e  +     +++v  +e+vp+i++ +      G    d +a++  + l++ks++d+ +L++a+kk y   +  Gv++ +  +ykG+kv+ ak k ++d+id+G+a  y e+ e+ v +r+G++Cvv  + dqWf+ky++eeW++++  ++++ + +   ++e+ ++f+ ++ Wlk++a++r  GLGt+lPwd+k++iesLsdstiy+ayytia+ll+ kd+l  +          ql+d++f+yifl      ++ ip  +le+lr efey+yP+dlr+s+kdLi+nhLt+ +++h+ai+ +  e+WPrg+  nG+++++ +k++ks+Gn+l+l eav+++ ad ar++l+da++   da+f+   +++a+  ++  + f+ e+   k++  l+ ge l+ l+  ++++++++i e+++++  +  r+ ++++ ++++  +d+yr    r   ++++ ++ + +e+ +++l P+ Ph ae +++ +G+egf ++a +P +    vd ++ +  ++l+n+ + ++  a  +++k+    k ++++++   dWkv+ l+ ++ l se+        k++ k ++     ++e++k+ k v+++    ++de +         el  ++ +vl++++ ++ k + + k +e         ++  p++kk +a P+kP+++l
  MMETSP1174-20130828|3497_1   68 ETRIQQQWESGGAFESEaqFDDAGspkpKFMVTFPYPYMNGKLHLGHAFSLTKAEFAAGYKRLKGFNVLFPFGFHCTGMPIQAAANKLKAEITK----YGNPPQfpvaaaaassggaskkkgkaqkakviskssgesyqwqtlqkmgIPEAELAEFAEPEKWLEYFPPYGMQDLKSFGTGIDWRRSFITTArnPYYNAFVEWQFRQLRNSDKIVFGKRPGVFSPRDKQACADHDRSDGEGVGPQEYTLIKLRVKAPFpaalaplngmdVFLAPATLRPETMYGQTNCFVLPEGEYGAFKwANGDVYIMSRRSALNLCHQSYKnkdfavewgtPDCIMTVKGQDLLGLPLQAPrAPYDTVYTLPLLSISMGKGTGVVTSVPSDAPDDYVALKELKDKPEWRKkfglTDEMVLPFEVVPIINITTpasceDGawssDAAAEHWSNILKIKSPNDRVKLDDAKKKTYNAGFSYGVMLVG--PYKGQKVSIAKPKERQDMIDAGEALSYSEP-ESYVRSRSGEECVVA-MTDQWFIKYGQEEWRDRVKAHVNNPETFqpySQEILDKFNFTLGWLKEWACSRLFGLGTQLPWDKKWVIESLSDSTIYMAYYTIAHLLQgKDNLSGDlpnpggitpeQLNDDVFNYIFLRGPSPTASTIPPATLERLRTEFEYWYPMDLRVSGKDLIGNHLTMSLYNHAAIWADrpEMWPRGMYTNGFMMINKQKMAKSTGNFLMLGEAVDEYSADGARFALADAGDSLLDANFERDVANQATLSVFGEEAFVAEMLaLKKEgkLRQGECLD-LETNVMKEMDRLISETDKHFTRMFWREGLNTGAWQYRILRDFYRdwcfRMDVVMHEGLILRWIETSALMLSPICPHYAEVVWKLLGREGFAAHADWPTLTGA-VDGKASRCFNFLKNTTKTLRAAALKDTKKSgelSKAFIYIADtysDWKVKTLEFMQTLWSETgggglpeKKDMLKAITTglltDPEMKKKKKLVMQFAAF-MADEARVIgfdaletELPYNQKDVLEESKVYLSKCIIVGKTLEVtvynlseADVPGPDQKKDKAEPGKPTLFL 1131
                  778899********99854344336777************************************************************987555....5555555556789******************************************************************************98889**********************************************************9986678999*****99*****************************9567899*************99888899999888889*****************8899******************************************9887888888999********97642222245222245666677779*****************************99..******************************.***************.9******************9997765551116678889**************************************************8344555558999999999**************999************************************************753389********************************************************************99999988864134444478887776.789999*****************************9999999983332445678888******************************************998.********************9655544444112677899999999**********998776422222213444555554666688888877766666532.3333222123344448889999*******999998776665543111111123446889999*******9987 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   2.2e-20   1.5e-17       9      96 ..      66     158 ..      59     174 .. 0.86
   2 !   19.8   0.0   5.2e-08   3.6e-05     126     235 ..     235     357 ..     224     362 .. 0.83
   3 !   48.0   0.0   1.6e-16   1.1e-13     309     757 ..     541     996 ..     519    1018 .. 0.71

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 2.2e-20
   TIGR00422   9 evekklyekweesgvfkpdedeek.....esfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklka 96 
                 + e++++++we+ g+f+ + + +      ++f+++ P P++ G+lH+GHa+ ++  ++ + ykr+kg+nvlf+ G+ + g++ q+   k  ++
  MMETSP1174-20130828|3497_1  66 ANETRIQQQWESGGAFESEAQFDDagspkPKFMVTFPYPYMNGKLHLGHAFSLTKAEFAAGYKRLKGFNVLFPFGFHCTGMPIQAAANKLKAE 158
                 57999***********987543322244377*****************************************************988775544 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 5.2e-08
   TIGR00422 126 eqlkrLGvsldwsrerfTldee..lskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkgklyyikyklangs..........gkd.klvvATTRPEtllgdtavaVhPeDe 235
                 + lk++G+++dw r  +T   +  ++  v+  F +l + + I  gkr+  ++p+ + a +d +    e  g   y   kl  ++          g d  l  AT RPEt+ g t  +V Pe e
  MMETSP1174-20130828|3497_1 235 QDLKSFGTGIDWRRSFITTARNpyYNAFVEWQFRQLRNSDKIVFGKRPGVFSPRDKQACADHDRSDGEGVGPQEYTLIKLRVKApfpaalaplnGMDvFLAPATLRPETMYGQTNCFVLPEGE 357
                 6799*************986543277889*********************************9988876665555555555544444567777777768999******************976 PP

  == domain 3    score: 48.0 bits;  conditional E-value: 1.6e-16
   TIGR00422 309 yqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkv..ekLadkaleaaekegeikfvPkrfekeylsWleelkdWcISRQliwghriP...vwy............eketgevvvakeeaeekektklgs..........keleqdeDVLDTWfsSslwplstlgWp....eekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvP..f.kevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaa..rkFlnKlwnasrfvlmnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiW..ndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkekadsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnialnaklevllk 757
                 y+g++++ a+ k  +d+ ++g      + ++ v   +Rs++   + +++QWf+k   e+  d++++ +++ ++ + + +++  +++  l  lk+W  SR    g+++P    w               + +++  +k++                     +  + ++DV    f  + +p  ++  p    +  ++++ +yp++l+v+g D+i    +  + +  a+  + P  + + ++ +g++   + +Km KS gN +   + +++y aD  Rf+la    +  D n++ +  ++a  + F +  + a  ++l+++      +  + +  ++++ +++++++li+e+++++ +  + e  +   +  W    + d y +    ++         + +  +   +++   +l+p+ P+ +e +++ l ++  + + a++P+ +   vd ka + f+ +k+++k++R     ++++++ +l+ ++ 
  MMETSP1174-20130828|3497_1 541 YKGQKVSIAKPKERQDMIDAGEALSYSEPESYV--RSRSGEECVVAMTDQWFIKYgqEEWRDRVKAHVNNPETFQPYSQEILDKFNFTLGWLKEWACSRLFGLGTQLPwdkKWVieslsdstiymaYYTIAHLLQGKDN----------LsgdlpnpggiTPEQLNDDVFNYIFLRGPSPTASTIPPatleRLRTEFEYWYPMDLRVSGKDLIGNHLTMSLYNHAAIWADRPemWpRGMYTNGFMMI-NKQKMAKSTGNFLMLGEAVDEYSADGARFALADAGDSLLDANFERDVANQAtlSVFGEEAFVAEMLALKKEG-----KLRQGECLDLETNVMKEMDRLISETDKHFTRMFWREGLN---TGAWqyRILRDFYRDWCF-RM------DVVMHEGLILRWIETSALMLSPICPHYAEVVWKLLGRE-GFAAHADWPTLTG-AVDGKASRCFNFLKNTTKTLRAAAL-KDTKKSGELSKAFI 996
                 555566656655555555555444444444444..468999888999******96226677788877776667777777888899999********************3333558766543332222222222222222..........1223556666556666899***9997777766554444333244578**********************99999999999888553367999998875.569*****************************9999999999986544333114566666666666666544.....3445567899*******************9987776543...333310333444444332.22......12233455667899999*****************9998.7889999****99.69*******************8643.34555555555544 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   8.2e-13   5.6e-10      10      96 ..      66     155 ..      56     189 .. 0.86
   2 !   16.7   0.0     5e-07   0.00035     131     344 ..     236     455 ..     232     463 .. 0.75
   3 !   31.3   0.0   1.9e-11   1.3e-08     400     820 ..     562     968 ..     509    1001 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 8.2e-13
   TIGR00392  10 kkeekilkkweekdife...kvkkkkedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekk 96 
                  +e  i+++we+  +fe   ++ +  ++k++f+     Py nG++hlgha+  +   +   yk+++Gf+v + +G  + G+Pi  + +k 
  MMETSP1174-20130828|3497_1  66 ANETRIQQQWESGGAFEseaQFDDAGSPKPKFMVTFPYPYMNGKLHLGHAFSLTKAEFAAGYKRLKGFNVLFPFGFHCTGMPIQAAANKL 155
                 58999***********93333556688999**999999*********************************************9988764 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5e-07
   TIGR00392 131 qfqrlgvlvDfekpYltldke..yeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvkl.....slliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkl.lekllkkage.......edleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkk 344
                 +++++g  +D+   ++t   +  y + v + +++l + + ++ ++++  +sp+ + a a+++    e     +    +k++vk    ++a + l     +l   T  P T++  +   v p+ eY +++  +  +v+i+ + + l+  +++ ++            i +vkg+dl gl  + p +  ++     ++ +l+   +++ +GtG+v + P+   +Dy+  k+
  MMETSP1174-20130828|3497_1 236 DLKSFGTGIDWRRSFITTARNpyYNAFVEWQFRQLRNSDKIVFGKRPGVFSPRDKQACADHDRSDGEGV-GPQEYTLIKLRVK-APFPAALAPLngmdvFLAPATLRPETMYGQTNCFVLPEGEYGAFKWAN-GDVYIMSRRSaLNLCHQSYKNkdfavewGTPDCIMTVKGQDLLGLPLQAPRAPYDT---VYTLPLLS---ISMGKGTGVVTSVPSDAPDDYVALKE 455
                 67899***********9864332888889*********************************9988822.2333445777777.45555444445666477777889***********************97.55556555440444444444412222223345799*************99877776...23444555...89******************988765 PP

  == domain 3    score: 31.3 bits;  conditional E-value: 1.9e-11
   TIGR00392 400 ekikHsyPhcw...RtkkPviyrateqwFikv..keikeelleeikk.vkwvpekg..ekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekiekkgidawiedlhkdlldkitlkskeg.geykreedvlDvWfdSGsspyavleyklen....ekkkevfpadlilEGsDQtrGWFyssllisvals...dkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskd..rlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeeavdealeasmk 820
                 e+++ s+P  +   R+ +  +   t+qwFik   +e ++++++++++  ++ p ++    +++  l   k+W+ SR    G+ +p w ++      v++s+ + +  +++  i      + kd l     + + g    +   dv++  f  G sp+a++  + +     ++++ ++p+dl + G D        sl    a+    +++  + + t+Gf++ +k +KM Ks gN     + +++y aD  R+ +a + d   d +f++++ ++++ +++        F++++  L+    +e +l+  +  +l   ++++++ l++e+++++ +   ++ l++          +w  ri +d  r ++ ++d         + + +et + +l+pi p++ae +++ l +e        +++p+  + avd + ++  +
  MMETSP1174-20130828|3497_1 562 EALSYSEPESYvrsRSGEECVVAMTDQWFIKYgqEEWRDRVKAHVNNpETFQPYSQeiLDKFNFTLGWLKEWACSRLFGLGTQLP-WDKKW-----VIESLSDSTIYMAYYTIAH--LLQGKDNLSGDLPNPG-GiTPEQLNDDVFNYIFLRGPSPTASTIPPATLerlrTEFEYWYPMDLRVSGKDLIGNHLTMSLYNHAAIWadrPEMWPRGMYTNGFMMINK-QKMAKSTGNFLMLGEAVDEYSADGARFALADAgDSLLDANFERDVANQATLSVFGEEA----FVAEMLALK----KEGKLRQGECLDLETNVMKEMDRLISETDKHFTRMFWREGLNTG---------AWQYRILRDfyRDWCFRMDVVM--HEGLILRWIETSALMLSPICPHYAEVVWKLLGRE---GFAAHADWPTL-TGAVDGKASRCFN 968
                 456666665444337888888899*******98888999999987762468886664479***************9999999998.44443.....3333333333333333332..2233444444333333.224446789***************99877765678899***************998887666555555442223344599******99877.9*****************************9999999999999988888876666655....888554555....466777888889999**************999888777776654.........4555555552244666666655..56678899********************998773...34444555554.4555555555555 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   2.6e-15   1.8e-12       7      90 ..      68     156 ..      62     165 .. 0.79
   2 !    9.4   0.0   7.6e-05     0.052      89     166 ..     218     297 ..     207     312 .. 0.74
   3 !   13.8   0.0   3.7e-06    0.0026     601     773 ..     775     955 ..     767     986 .. 0.72

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 2.6e-15
   TIGR00396   7 eekwqqkwkekkvkkve...edsekkkyYiLsmfPYP..sgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaierg 90 
                 e ++qq+w++   ++ e   +d  ++k   +  fPYP   g+lHlGH  + t ++  + ykrlkg+nvl P+Gf   G+P   aa + +
  MMETSP1174-20130828|3497_1  68 ETRIQQQWESGGAFESEaqfDDAGSPKPKFMVTFPYPymNGKLHLGHAFSLTKAEFAAGYKRLKGFNVLFPFGFHCTGMPIQAAANKLK 156
                 678899999887766541115667777777777777733677**************************************999986655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 7.6e-05
   TIGR00396  89 rgtaPakwteeniakmkkqlqalgfsydwdrelatt..dpeYykftqwiFlelfekgLaykkeaevnwcpedktvLanee 166
                 +  +P+kw e    +  ++l+++g ++dw r++ tt  +p Y  f  w F +l +   +   + +  + p+dk   a+ +
  MMETSP1174-20130828|3497_1 218 EFAEPEKWLEYFPPYGMQDLKSFGTGIDWRRSFITTarNPYYNAFVEWQFRQLRNSDKIVFGKRPGVFSPRDKQACADHD 297
                 556788888888888889**************988733466778********9877666555555556666666666555 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 3.7e-06
   TIGR00396 601 vslekmskskkngidPqeivkkyGaDalRlyi......lFasPieksleWd.esgleGaeRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakk.......eelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkv 773
                    +km+ks +n +   e v++y aD +R  +      l  +  e++++ + +  + G e f+  ++ l ke  ++    +    +  +++ ke+ r + ++ k+ t  + ++  lnt   ++ +l +              e l+l  +++   +lspi Ph ae +++ lg+e ++++ a+wp++
  MMETSP1174-20130828|3497_1 775 INKQKMAKSTGNFLMLGEAVDEYSADGARFALadagdsLLDANFERDVANQaTLSVFGEEAFVAEMLALKKE--GKLR--QGECLDLETNVMKEMDRLISETDKHFTRMFWREG-LNTGAWQYRILRDFYRDWCFrmdvvmhEGLILRWIETSALMLSPICPHYAEVVWKLLGREGFAAH-ADWPTL 955
                 5679*************************9872222223344444444333144688999999998888887..3333..2223344455566666666666666666666555.****99999998876654434445664578888999999*******************7775555.458865 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.1e-12   7.7e-10       2      59 ..      98     155 ..      97     162 .. 0.95
   2 !    7.9   0.1   0.00035      0.24     165     248 ..     567     653 ..     541     677 .. 0.77
   3 !   22.2   0.0   1.6e-08   1.1e-05     311     440 ..     763     886 ..     712     949 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.1e-12
   TIGR00398   2 lvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAese 59 
                 +vT + +Y ngk+HlGh+++   a   a ykrl+G +vlf  g  + G +i+ +A++ 
  MMETSP1174-20130828|3497_1  98 MVTFPYPYMNGKLHLGHAFSLTKAEFAAGYKRLKGFNVLFPFGFHCTGMPIQAAANKL 155
                 79*****************************************************986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00035
   TIGR00398 165 ieprcvv...skakpelkeeehyFfrl..skfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkdpnkvv 248
                  ep+++v   s+++ ++  ++++F +   +++++ +++++++ ++++  ++e+ ++ + f+ + Lk++a +R     G+++P d++ v+
  MMETSP1174-20130828|3497_1 567 SEPESYVrsrSGEECVVAMTDQWFIKYgqEEWRDRVKAHVNNPETFQPYSQEILDKFN-FTLGWLKEWACSRLFG-LGTQLPWDKKWVI 653
                 4555655222466788999999999853378**********88888888888888766.66677********988.*******998877 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 1.6e-08
   TIGR00398 311 lpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkale 440
                  p+ + + g++ ++ +km kS gn++   +++++y+ad  R+ l+       D +f+ +      N+  ++ +g  +  ++++ + + egkl++ +   + + +++k++++ +++ d+ + ++ ++++l+
  MMETSP1174-20130828|3497_1 763 WPRGMYTNGFMMINKQKMAKSTGNFLMLGEAVDEYSADGARFALADAGDSLLDANFERDV----ANQATLSVFGEEAF-VAEMLALKKEGKLRQGEC-LDLETNVMKEMDRLISETDKHFTRMFWREGLN 886
                 588999*****************************************9999999998764....45555677776443.444444455556666555.34466777777777777777777776666665 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0     3e-10   2.1e-07     219     294 ..     730     808 ..     724     866 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3e-10
   TIGR00435 219 eldiHsGGvDlifpHHeNEiaqsealfd...kqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRlllls 294
                  +d+ + G+Dli+ H    +  + a++    + +      ngf++i+++Km+KS gNf+++ ++++++++   R++l+ 
  MMETSP1174-20130828|3497_1 730 PMDLRVSGKDLIGNHLTMSLYNHAAIWAdrpEMWPRGMYTNGFMMINKQKMAKSTGNFLMLGEAVDEYSADGARFALAD 808
                 5799999********99998888887753445677778889**********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.24s 00:00:01.20 Elapsed: 00:00:01.20
# Mc/sec: 1245.10
//
Query:       MMETSP1174-20130828|3500_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1174-20130828|3501_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|3507_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 496.28
//
Query:       MMETSP1174-20130828|3510_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    7.9  24.6       0.27    7.5  17.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  17.0   6.6e-05      0.27      10     147 ..     119     261 ..      98     286 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 6.6e-05
   TIGR01642  10 EksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrs..rrkdsRdRdrrr..ydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssne...kkkddkkr.slwdvkppkyeavtavqakasqvansvpgiaqkssl 147
                  ++r  dr +s  R+R+ + d  r Rd dr  r+      +d+R+ drr   +++++ +  ++d+rr  R+ +rr++ s++ + ++  + r+  +  e   + ++ + r ++ +  + +  a  ++ ++++ ++  +p++   + +
  MMETSP1174-20130828|3510_1 119 RDNRLDDR-HSPGRHRDNNPDSPRGRDDDRSRREGPlrDSRDDRHDDRRGdiRNDKRDDRRDDDYRRDERHGDRRENTSRRDDRRDD-NYRRDDPADEllkTLRETQDRlKYLESSRGQPMASAPMPIQMQAMP-TIPAMTAMPHM 261
                 33343444.566677766666666665555533322002234444444331122222233455667777777444444444333333.3333333332110222333330333333333334444444444444.66665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1271.11
//
Query:       MMETSP1174-20130828|3516_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-21   74.6   0.0    1.7e-21   74.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    8.4e-05   19.6   0.1    0.00016   18.6   0.0    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00046   17.0   0.3       0.06   10.1   0.0    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0023   15.1   0.1     0.0083   13.3   0.0    1.8  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0075   13.5   0.2       0.37    7.9   0.0    2.1  2  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.015   12.3   0.4      0.027   11.5   0.3    1.3  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
      0.027   11.1   0.1      0.054   10.1   0.0    1.5  2  TIGR00959 ffh: signal recognition particle protein
      0.029   11.9   0.0      0.055   11.0   0.0    1.4  1  TIGR00041 DTMP_kinase: thymidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   3.4e-24   1.7e-21       2     135 ..      16     143 ..      15     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 3.4e-24
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvksl 135
                 ke++i+i+G +++GK+t+l++l  ++  +  + p+++++++t   ++++  +k++++D++Gq   ++ +r y+++++++++vvd + + ++++ +  ++ +   +e + k++ +++++nK+D+ ++l  +  s+
  MMETSP1174-20130828|3516_1  16 KEVRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVET--LKYKN--IKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADR-ERLNVAQ-QELQAMLEEEELKDSILLVFANKQDQSGALGAQGVSE 143
                 789********************99988888889******99..6****..88***********************************.8888777.6666666666669*************99544444333 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-07   0.00016       2     121 ..      19     133 ..      18     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.1e-07
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvda..reglteeDeeiaklLrksk..kpvilv.vNKvdnk 121
                  + i+G  N GK t++ +l ++ +  ++  p +    + ++ ++k+ +f++ D gG         ++ir   +    + d+i+fvvd   re+l+ + +e+ ++L++++    ++lv +NK d+ 
  MMETSP1174-20130828|3516_1  19 RILILGLDNAGKTTILYKLQNETDEEINTIPTIG--FNVETLKYKNIKFQVWDLGGQ--------TSIRPYWRCYYPNTDAIIFVVDSadRERLNVAQQELQAMLEEEElkDSILLVfANKQDQS 133
                 589**********************999999775..788999**************7........6789999999************7446799***********98876455555448**9987 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0032       1.7     190     213 ..      18      41 ..      13      62 .. 0.85
   2 !   10.1   0.0   0.00012      0.06     269     315 ..      87     134 ..      84     151 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0032
   TIGR03156 190 ptvalvGYTNaGKstllnaltkae 213
                 +++ + G  NaGK+t+l +l +++
  MMETSP1174-20130828|3516_1  18 VRILILGLDNAGKTTILYKLQNET 41 
                 578899***********9998864 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00012
   TIGR03156 269 adlllhvvDasdeeaee.qieaveevLeelgaeeipvllvlNkidkle 315
                 +d ++ vvD++d+e+ +   ++ +++Lee ++++   l+  Nk d+  
  MMETSP1174-20130828|3516_1  87 TDAIIFVVDSADRERLNvAQQELQAMLEEEELKDSILLVFANKQDQSG 134
                 799*********988771556799**********9999999****975 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.6e-05    0.0083     116     166 ..      15      66 ..       7      77 .. 0.82
   2 ?   -0.5   0.0      0.26   1.3e+02      68     107 ..      79     118 ..      67     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
   TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk.ele 166
                 +k++r+l++G+ N GK t++ +l ++   +    p +  + +++k+++ +++
  MMETSP1174-20130828|3516_1  15 SKEVRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVETLKYKNiKFQ 66 
                 689**********************999999888888777777777554555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.26
   TIGR03596  68 kwlkyfeekgkkalavnakkkkkvkkilkaikkllkekke 107
                  w  y+ +++  +++v++ ++++++   ++++++l+e++ 
  MMETSP1174-20130828|3516_1  79 YWRCYYPNTDAIIFVVDSADRERLNVAQQELQAMLEEEEL 118
                 5788888888888888888888888888888888887665 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00072      0.37       2      24 ..      19      41 ..      18      59 .. 0.86
   2 ?    4.0   0.0     0.012         6      81     112 ..      88     118 ..      85     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00072
   TIGR00436  2 fvailGrpnvGKSTLlNkllgqk 24
                ++ ilG  n+GK T+l kl ++ 
  MMETSP1174-20130828|3516_1 19 RILILGLDNAGKTTILYKLQNET 41
                688***************98875 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
   TIGR00436  81 dlilfvvdsdeknkedellleklqklkapvvl 112
                 d i+fvvds +++   ++ +++lq + ++  l
  MMETSP1174-20130828|3516_1  88 DAIIFVVDSADRERL-NVAQQELQAMLEEEEL 118
                 89*******999988.7777777766554444 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   5.2e-05     0.027     154     203 ..      17      65 ..       3      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.2e-05
   TIGR03597 154 ekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl 203
                 e   ++++G  N GK +++ kl ++++++ + i t  f   Tl+  +i++
  MMETSP1174-20130828|3516_1  17 E-VRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVETLKYKNIKF 65 
                 3.6789******************99999999***************998 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011     0.054      98     124 ..      16      42 ..       5      77 .. 0.86
   2 ?   -1.9   0.0      0.47   2.4e+02     187     206 ..      93     111 ..      84     147 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
   TIGR00959  98 kpavillvGLqGsGKtttaaKlakklk 124
                 k + il++GL  +GKtt   Kl + + 
  MMETSP1174-20130828|3516_1  16 KEVRILILGLDNAGKTTILYKLQNETD 42 
                 5688******************98743 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.47
   TIGR00959 187 ivDtaGRlqideelmeelke 206
                 +vD+a R +++ +  +el++
  MMETSP1174-20130828|3516_1  93 VVDSADRERLNVA-QQELQA 111
                 3444443333222.122222 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011     0.055       7      32 ..      20      45 ..      15      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   TIGR00041  7 iviEGidGaGKTtqlellkkllkeeg 32
                i+i G+d aGKTt+l +l++  +ee+
  MMETSP1174-20130828|3516_1 20 ILILGLDNAGKTTILYKLQNETDEEI 45
                8999*************999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 675.47
//
Query:       MMETSP1174-20130828|3514_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1231.90
//
Query:       MMETSP1174-20130828|3519_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|3518_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1174-20130828|3526_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 247.88
//
Query:       MMETSP1174-20130828|3524_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.54
# Mc/sec: 1007.03
//
Query:       MMETSP1174-20130828|3529_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.2  15.2     0.0039   14.6  10.5    1.8  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  10.5   9.5e-07    0.0039      71     288 ..       4     217 ..       1     229 [. 0.68

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9.5e-07
   TIGR00817  71 vaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva....lasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGv 288
                 va + t+    sn sl  ++     + ++ + i +++l  f+ +++f++  +l+ + + +G      + s+ + +fn +g++   +s  +      +  ++ ++ +  +  +y+  +++++ + +  a++  +  ++   +++       + ++    ++a  ++  + +   q  + v  +   vgN  K + +I  S +ff +++s+l vlG++l+i G+
  MMETSP1174-20130828|3529_1   4 VATCLTLSSSLSNISLDYINYPTKVIFRSSKLIPTMGLAIFIHRTQFNSREWLAAVAVCFGLVfvgvSDSMSSPNFNGVGITLVSLSVFADSIMPNVQQRLFQRGEQRSDVVYITNVLTSIAMTLSLAVSGSLSAVIR-LLFHDKTLALYMAVY---TIVAY-FAVSMHMTVVQKFGGVTGV--FVGNARKMMTIIL-SFVFFPKPVSTLWVLGAVLSISGL 217
                 677888888889999999999888888888888899999999*******************98888888999999999998877777665443333333333322222333444444444444444555544444444.333332222222222...22222.2333446666777777776..5****99888886.5**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 873.16
//
Query:       MMETSP1174-20130828|3530_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 617.24
//
Query:       MMETSP1174-20130828|3533_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 681.35
//
Query:       MMETSP1174-20130828|3532_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 904.00
//
Query:       MMETSP1174-20130828|3536_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1174-20130828|3538_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 178.19
//
Query:       MMETSP1174-20130828|3534_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1440.40
//
Query:       MMETSP1174-20130828|3539_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1310.11
//
Query:       MMETSP1174-20130828|3542_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 761.94
//
Query:       MMETSP1174-20130828|3550_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 160.27
//
Query:       MMETSP1174-20130828|3545_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 817.32
//
Query:       MMETSP1174-20130828|3549_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1315.63
//
Query:       MMETSP1174-20130828|3551_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 454.20
//
Query:       MMETSP1174-20130828|3552_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|3553_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1301.69
//
Query:       MMETSP1174-20130828|3557_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 245.65
//
Query:       MMETSP1174-20130828|3559_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-91  302.4   1.9    5.1e-91  302.3   1.3    1.0  1  TIGR01310 L7: 60S ribosomal protein L7
    8.6e-24   82.3   0.3    1.4e-23   81.6   0.1    1.4  2  TIGR01309 L30P_arch: ribosomal protein L30P


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.3   1.3   2.5e-94   5.1e-91       1     235 [.      23     255 ..      23     256 .] 0.93

  Alignments for each domain:
  == domain 1    score: 302.3 bits;  conditional E-value: 2.5e-94
   TIGR01310   1 pelllkkrkaeqelkkeaakkkklkkkenkkkkkkkfkRaekfvkeyekaerekirlkreakkkgklyveaekklvFviRikginkldpkvrkvlklLrLkkvnngvFvkvnkatlelLrivePyVayGyPnlksvreLiyKrGfakidgkrvpltdnalieqaLgkfgvicieDliheiatvGphFkevnnfLwpfkLssPskgfkkkkkkksfkeggdaGnreekINeLikkm 235
                 pe++ kkr++ +++k+++ +  + + k+   +k++++kRae++  ey k e+++irl+r+ak ++++yv++e+klvFviRi+gi +++pkv+k+l+lLrL++++ngvFvk+n at+++Lr+vePy+ayGyPnlk v++++yKrG++k++++r++l++n++ie  Lgk++++c+eDlihei+tvGphFk+++nfLwp kL+ P++g+ +  k k+f+egg+aG r+ekI  Lik+m
  MMETSP1174-20130828|3559_1  23 PESVQKKRRTAAANKAKQDAADAEAGKKAVAQKAEMMKRAEQYAAEYSKLEQDAIRLRRQAKTDKSYYVPEEPKLVFVIRIRGIIGVSPKVKKILQLLRLRQIFNGVFVKLNSATIKMLRLVEPYIAYGYPNLKCVKDIVYKRGYGKVNKQRIALSENSVIESVLGKYDIMCMEDLIHEIYTVGPHFKQASNFLWPAKLTAPRGGIPN--KLKHFNEGGQAGLRGEKIVGLIKQM 255
                 677888888777666655555555555555666677*************************************************************************************************************************************************************************999..************************9 PP

>> TIGR01309  L30P_arch: ribosomal protein L30P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.2   2.5e+03      41      59 ..      56      75 ..      50      80 .. 0.64
   2 !   81.6   0.1   6.7e-27   1.4e-23       3     151 .]     100     256 .]      98     256 .] 0.87

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.2
   TIGR01309 41 kgmlqkvkdyvt.yGeided 59
                 +m++++++y + y  +++d
  MMETSP1174-20130828|3559_1 56 AEMMKRAEQYAAeYSKLEQD 75
                56788888876535555555 PP

  == domain 2    score: 81.6 bits;  conditional E-value: 6.7e-27
   TIGR01309   3 viriRGtvdvkrdiedtlelLrlrkvnhavlvpeteslkgmlqkvkdyvtyGeidedtLeellrkRgrlkGdkk...vtdeyvke.kt...glesveelakalvegeikleeag.lkpviRLhPPrkGfesikkaykegGelGyrgekineLlkkml 151
                 viriRG ++v+ ++++ l+lLrlr++++ v v+ ++++  ml+ v++y++yG  + + +++++ kRg  k +k+   ++++ v e ++   ++  +e+l+++++    ++++a+ +    +L  Pr+G+ +  k+++egG++G rgeki  L+k+ml
  MMETSP1174-20130828|3559_1 100 VIRIRGIIGVSPKVKKILQLLRLRQIFNGVFVKLNSATIKMLRLVEPYIAYGYPNLKCVKDIVYKRGYGKVNKQriaLSENSVIEsVLgkyDIMCMEDLIHEIYTVGPHFKQASnFLWPAKLTAPRGGIPNKLKHFNEGGQAGLRGEKIVGLIKQML 256
                 9*****************************************************************984444322226666655514421145567999****9999999999879999***********9999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 718.92
//
Query:       MMETSP1174-20130828|3566_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|3567_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 321.17
//
Query:       MMETSP1174-20130828|3568_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 717.69
//
Query:       MMETSP1174-20130828|3571_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-09   33.5  10.2    4.7e-09   33.5   7.1    2.1  2  TIGR00890 2A0111: oxalate/formate antiporter
     0.0014   16.6  19.6     0.0014   16.6  13.6    3.1  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   7.1   2.3e-12   4.7e-09      53     177 ..      32     159 ..       6     207 .. 0.85
   2 ?   -1.7   1.9      0.11   2.3e+02      52     116 ..     233     303 ..     214     376 .. 0.63

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.3e-12
   TIGR00890  53 lsqvvgGkladkfGpravallggillgiGfifaaladslallyltyglasvgegivYgialstavkWfpdkrGLa..sgiiiggyGlGslilsplitsvielegv.eaafivmgivalllivllalli 177
                   + vgG+l+ ++G+ +   +g  +   G +++a+a ++a ly+++ + s+g+g++Y  +++     f d  G a  +gi+ +g   Gs+++s  i     + g    +f+vmg+     i +lal  
  MMETSP1174-20130828|3571_1  32 TFMAVGGYLVSRWGSFLTISIGMFIESFGLFIMAIATNMATLYVAVFFISAGSGVMYTAVFPMLLDLFSDGSGAAisTGIALAGKQAGSAMASLSIIMAQSSLGWrGTTFLVMGLCSICAIAVLALYS 159
                 5589*********************************************************************65559***********99886554444444441689******9998888888754 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.11
   TIGR00890  52 alsqvvgGkladkfGpravallggillgiGfifa...aladslallyltyg.lasv..gegivYgialsta 116
                  +sq   G +    G+r+v +  g l + G  ++   al   +a +++    +as   g  i Y++ + ta
  MMETSP1174-20130828|3571_1 233 IISQLGCGSVGCILGGRLVEMDTGFLFLPGTAMMhqpALGLVIASVFVVLMlFASSfkGAFIYYSLYILTA 303
                 46788888888888888888888888887753321112222222233333334444113334555555554 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  13.6   6.8e-07    0.0014      18     136 ..      37     156 ..      28     160 .. 0.85
   2 ?    1.6   0.1     0.029        59      51     113 ..     191     253 ..     179     266 .. 0.62
   3 ?   -0.9   6.3      0.17   3.4e+02      33     116 ..     271     355 ..     269     379 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.8e-07
   TIGR00880  18 sglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllf 136
                  g+l++r G    + +g+fi +++ +++a+++n+++l++a ++++ g++++ +a+  ++ d+++++   +   g+++ag  +g  ++ l   ++a + lgwr + ++++ l+ +++i++l 
  MMETSP1174-20130828|3571_1  37 GGYLVSRWGSFLTISIGMFIESFGLFIMAIATNMATLYVAVFFISAGSGVMYTAVFPMLLDLFSDGsGAAISTGIALAGKQAGSAMASL-SIIMAqSSLGWRGTTFLVMGLCSICAIAVLA 156
                 5788999999999****************************************************98899999*******999999875.556666899***7655555555555555544 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.029
   TIGR00880  51 itvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqa 113
                 +  l    +l++f   + ++   +++ d+++++e    +  + + +    ++G +lG+ l+++
  MMETSP1174-20130828|3571_1 191 LLALWCGMTLAAFCDTFESSWSPTYFDDAYPTKENDFSILNAIISQLGCGSVGCILGGRLVEM 253
                 445556667777777777788888888888877554433333333334446677777777665 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.17
   TIGR00880  33 vglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagia.lgpilGpllGavlaqalgw 116
                 +gl+i +++ +l+ ++s++ + +i   l  ++a    v +   +  i+k+ er+v lg+++     ++ +++ +lG + +++ ++
  MMETSP1174-20130828|3571_1 271 LGLVIASVFVVLMLFASSFKGAFIYYSLYILTAKSYPVGIMLAVQLIVKPAERGVLLGVFLFTYWiAASLFATVLGDMDMSVGNK 355
                 6999*********************99998777777777777788899999*******998766505567899999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.32s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1228.31
//
Query:       MMETSP1174-20130828|3572_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.2   5.2       0.46    6.0   0.0    3.2  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1    0.0034        14      55      94 ..      56      99 ..      46     106 .. 0.61
   2 ?    3.4   0.1   0.00073         3      51      94 ..     124     171 ..     122     179 .. 0.82
   3 ?    6.0   0.0   0.00011      0.46      51      94 ..     232     280 ..     231     281 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.0034
   TIGR02917 55 daeaRflLgkiyle....qGdaaaAekeLrkAlslgyskeqvlp 94
                +a a + Lg +y +      d++ A+  +rkA+++g +++q ++
  MMETSP1174-20130828|3572_1 56 NAVAQYHLGMMYDRghgvSRDYVRAVEYYRKAANQGDAEAQCNL 99
                45566666666654222223666677777777666666666555 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.00073
   TIGR02917  51 kdpndaeaRflLgkiyle....qGdaaaAekeLrkAlslgyskeqvlp 94 
                 +d+  aea f Lg++y++      d+      +rkA+++g++++q ++
  MMETSP1174-20130828|3572_1 124 ADQGLAEAQFNLGQMYVKgrgvSQDYLRTFEWFRKAANQGLDSAQYNL 171
                 68899***********98433334888888899999999999998776 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.00011
   TIGR02917  51 kdpndaeaRflLgkiyle.....qGdaaaAekeLrkAlslgyskeqvlp 94 
                 +++ +a+  f Lg +y++     + d++ A+k LrkA+++g +++q+l+
  MMETSP1174-20130828|3572_1 232 ANQGNADGQFMLGATYMSsdyglTMDLQLAVKWLRKAVDQGNKSAQLLL 280
                 577899999******998333334699******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.25s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1067.23
//
Query:       MMETSP1174-20130828|3575_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.34s 00:00:00.59 Elapsed: 00:00:00.64
# Mc/sec: 1313.70
//
Query:       MMETSP1174-20130828|3577_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.25s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 840.56
//
Query:       MMETSP1174-20130828|3580_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 503.51
//
Query:       MMETSP1174-20130828|3582_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-15   55.5   0.1    1.5e-15   55.0   0.1    1.2  1  TIGR03175 AllD: ureidoglycolate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03175  AllD: ureidoglycolate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   3.7e-19   1.5e-15     123     237 ..       3     120 ..       1     129 [. 0.88

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3.7e-19
   TIGR03175 123 fvkkaaeqglvalslcqsd.pmvvpfggteiyfgtnpiafaapsageei..itfdmattvqawgkvldarsrnesipetwavdkkgapttdafevrallpiagpkgyglmmmvdvlsg 237
                 +v +a+++g +a++ c    p v p gg+++  gtnp ++a p+a+      ++d at+v + g v       +  p    vd++g+pt d+   +a     g kgygl ++ ++l+ 
  MMETSP1174-20130828|3582_1   3 WVMRASRKGYIAFTTCTGAlPEVAPHGGSKPTLGTNPWTWALPTADVLGfdFVMDWATSVVSNGTVKALARDGKPCPAGAIVDAAGQPTLDPSRFHAHACFGGYKGYGLCVLTELLAA 120
                 7899************8644*************************97641156788********997655556789************************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 673.41
//
Query:       MMETSP1174-20130828|3585_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1174-20130828|3591_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|3584_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 666.08
//
Query:       MMETSP1174-20130828|3593_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1174-20130828|3596_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|3598_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|3597_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 214.04
//
Query:       MMETSP1174-20130828|3602_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|3604_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 2101.67
//
Query:       MMETSP1174-20130828|3615_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.4   0.0       0.76    7.5   0.0    2.0  2  TIGR03567 FMN_reduc_SsuE: FMN reductase
     0.0031   13.4   0.0       0.17    7.7   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR03567  FMN_reduc_SsuE: FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00037      0.76      58      86 ..       2      30 ..       1      37 [. 0.89
   2 !    6.5   0.0   0.00078       1.6      59      85 ..      38      64 ..      33      69 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00037
   TIGR03567 58 eltakvakAdgvvvatPvYkasysGvLka 86
                e++a v++A++ +  tP+Y a+  G L +
  MMETSP1174-20130828|3615_1  2 EAHADVNQATTSIGCTPLYTAAERGNLEV 30
                57899*****************9999865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00078
   TIGR03567 59 ltakvakAdgvvvatPvYkasysGvLk 85
                ++a v++A++    tP+Y a+y G L 
  MMETSP1174-20130828|3615_1 38 AHADVNQATTDNGRTPLYMAAYQGNLD 64
                56677777777778**********996 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   8.3e-05      0.17     124     152 ..       8      36 ..       2      47 .. 0.78
   2 !    5.1   0.0   0.00049         1     124     150 ..      43      69 ..      35      71 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 8.3e-05
   TIGR00870 124 stseftkgitalilAihkqnyeivklLle 152
                 +  + + g t+l  A+++ n+e+v+ L  
  MMETSP1174-20130828|3615_1   8 NQATTSIGCTPLYTAAERGNLEVVRYLAS 36 
                 55677889*****************9964 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00049
   TIGR00870 124 stseftkgitalilAihkqnyeivklL 150
                 +  +  +g t+l +A+ + n+ +v+ L
  MMETSP1174-20130828|3615_1  43 NQATTDNGRTPLYMAAYQGNLDVVRYL 69 
                 55667789****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|3612_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-55  187.0   0.1      2e-55  186.2   0.1    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      6e-51  171.5   0.5    5.3e-50  168.4   0.2    2.3  3  TIGR03689 pup_AAA: proteasome ATPase
    1.5e-48  163.6   1.1    1.1e-41  141.0   0.4    2.2  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.9e-44  150.1   1.2    8.5e-39  131.4   0.7    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.5e-08   30.8   0.1    1.2e-07   28.5   0.0    1.8  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.4e-05   22.1   0.1     0.0021   15.0   0.0    2.3  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00028   17.7   0.3       0.12    9.0   0.0    3.2  4  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0005   17.0   0.1      0.015   12.2   0.0    2.5  2  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0014   14.9   0.1     0.0046   13.3   0.1    1.7  2  TIGR00763 lon: ATP-dependent protease La
     0.0028   15.0   0.6       0.76    7.1   0.0    2.8  3  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0048   13.7   0.4      0.041   10.6   0.0    2.1  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0048   13.3   0.1     0.0089   12.5   0.1    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.019   12.0   0.0    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.011   13.6   0.1       0.35    8.7   0.0    2.5  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.2   0.1   6.8e-58     2e-55     180     558 ..      49     436 ..      39     496 .. 0.86

  Alignments for each domain:
  == domain 1    score: 186.2 bits;  conditional E-value: 6.8e-58
   TIGR01243 180 igglkeavkki.relvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayf.iaingpeimskyygeseerlreifkeae..ena..ps....iifideidaiapkr....eevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvd......ldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpe.ilskwvgesekaireifrkarqaapaiifldeidai 558
                 iggl+ + +ki r      +    + e+lg+   kg++l+gppg gktl+a+ +    +a     +ngpei+ k++g see++r +f eae  e a  p     ii+ de d++   r    + v g v   vv qll+ +dg+    ++++ig tnr d +d a++rpgr++  +eig pd +gr +il iht  m  ++         l +lae ++ f ga+la l++ a  +al r ++  ++ ++          +l v  +df  al +++p         + ++k     g+ +  q++++     ++  +  +    +p   vll g p tgkt la   a esg  fi +   e ++ k        i++if  a ++  +ii+ld+i+ +
  MMETSP1174-20130828|3612_1  49 IGGLDGEFEKIfRRAFASRMFPQHITEQLGLAHVKGMILFGPPGCGKTLIARQIGKVLNAREpKIVNGPEILDKFVGGSEEKVRALFAEAEaeEKAegPNsmlhIIIFDEFDSLCRSRgssgDGVGGGVHDTVVNQLLAKIDGVDSLNNILIIGMTNRMDMIDTAIKRPGRLEVHVEIGLPDTKGRLQILTIHTAPMRENKRTTdevearLPELAERSKNFSGAELAGLVRSAKDMALSRCVNVTEMSVDD--------TKLMVQWSDFEHALTEIHPE----FGAPMDDLKSYFRYGIVDHSQAFKDLKSLLFRCVNQVKTRDRTPVMSVLLEGDPLTGKTALAAHAAVESGFPFIRLISAEpLIGKSETAKCAHIKQIFMDAYRSPLSIILLDDIERL 436
                 8999999999856777777877889**********************************9762678*********************976522666333234448999******9988555567999*******************************************************************988655433235556699******************************944444332........368899*************5....556677888888889999999999999999999999999999********************************9988882445555555567*********************976 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.4   0.2   1.8e-52   5.3e-50     183     378 ..      48     242 ..      35     264 .. 0.89
   2 ?   -1.7   0.0      0.65   1.9e+02     439     472 ..     270     303 ..     265     316 .. 0.83
   3 ?   -0.6   0.0      0.29        86     200     235 ..     348     383 ..     334     389 .. 0.72

  Alignments for each domain:
  == domain 1    score: 168.4 bits;  conditional E-value: 1.8e-52
   TIGR03689 183 diGGldsqieqi.rdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferar..ekaaegrP..vvvffdemdslfrtrGs...GvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyl 378
                  iGGld + e+i r a    +  +++ ++ +l   kG++l+GPPGcGktlia+ + + l ++  +          + GPe+l+k+vG +e ++r++f+ a   eka+  +    ++ fde dsl r rGs   Gv   v  tvv qlla +dGv+sl+n+++iG +nr d+id ai rPGrl+v + i+ Pd+++  +il+ + 
  MMETSP1174-20130828|3612_1  48 GIGGLDGEFEKIfRRAFASRMFPQHITEQLGLAHVKGMILFGPPGCGKTLIARQIGKVLNAREPK---------IVNGPEILDKFVGGSEEKVRALFAEAEaeEKAEGPNSmlHIIIFDEFDSLCRSRGSsgdGVGGGVHDTVVNQLLAKIDGVDSLNNILIIGMTNRMDMIDTAIKRPGRLEVHVEIGLPDTKGRLQILTIHT 242
                 59********997899999999999*********************************9986543.........477********************9865215665433322699************976669**************************************************************99998775 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.65
   TIGR03689 439 sGamlanivdrakkaaikdeleggqkglraehll 472
                 sGa la +v  ak +a+   ++ ++ ++   +l+
  MMETSP1174-20130828|3612_1 270 SGAELAGLVRSAKDMALSRCVNVTEMSVDDTKLM 303
                 9999***********9999998888877766665 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.29
   TIGR03689 200 lPflhkelyreydlkpPkGvllyGPPGcGktliaka 235
                 l f   +  +  d +p   vll G P +Gkt +a  
  MMETSP1174-20130828|3612_1 348 LLFRCVNQVKTRDRTPVMSVLLEGDPLTGKTALAAH 383
                 5555555566667778889************87743 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.4   3.7e-44   1.1e-41     123     348 ..      48     290 ..      36     305 .. 0.85
   2 !   20.7   0.0   1.4e-07     4e-05     155     226 ..     363     435 ..     353     448 .. 0.91

  Alignments for each domain:
  == domain 1    score: 141.0 bits;  conditional E-value: 3.7e-44
   TIGR01242 123 diGGlekqlrei.reavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvv.gselvkkyiGeGarlvrevfkl..akeka..p.s...iifideidaiaakrldsstsGdrevqrtll.qllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmk....laedvd..leelaklteGasGadlkaivteaGmfaireer 348
                  iGGl+ ++++i r a    +   ++ e++G+   kG++l+GppG+Gktl+a+ + +  na   ++v g e++ k++G     vr +f    a eka  p s   ii+ de d+++  r  s  +    v+ t++ qlla++dG d+++n+ +i+ tnr+d++d a+ rpGr++  +e+ lpd +Grl+il iht  m+     +++v+  l ela+ ++ +sGa+l  +v  a  +a+ +  
  MMETSP1174-20130828|3612_1  48 GIGGLDGEFEKIfRRAFASRMFPQHITEQLGLAHVKGMILFGPPGCGKTLIARQIGKVLNAREPKIVnGPEILDKFVGGSEEKVRALFAEaeAEEKAegPnSmlhIIIFDEFDSLCRSRGSSGDGVGGGVHDTVVnQLLAKIDGVDSLNNILIIGMTNRMDMIDTAIKRPGRLEVHVEIGLPDTKGRLQILTIHTAPMRenkrTTDEVEarLPELAERSKNFSGAELAGLVRSAKDMALSRCV 290
                 4899*999998857788888888999***************************************99578******************862257898443424448899**********999999888999887659**********************************************************9886222245566633679****************9999888876544 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 1.4e-07
   TIGR01242 155 ppkGvllyGppGtGktllakavaeetnatfirvvgse.lvkkyiGeGarlvrevfklakekapsiifideida 226
                 p   vll G p tGkt la   a e+   fir++++e l+ k        ++++f  a     sii++d+i+ 
  MMETSP1174-20130828|3612_1 363 PVMSVLLEGDPLTGKTALAAHAAVESGFPFIRLISAEpLIGKSETAKCAHIKQIFMDAYRSPLSIILLDDIER 435
                 6678******************************99878999888888899*******99999*******985 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.7   2.9e-41   8.5e-39      82     277 ..      75     286 ..      49     305 .. 0.83
   2 !   16.7   0.0   1.8e-06   0.00053      91     158 ..     366     434 ..     344     443 .. 0.90

  Alignments for each domain:
  == domain 1    score: 131.4 bits;  conditional E-value: 2.9e-41
   TIGR01241  82 tklGakiPkGvllvGpPGtGktLlakavaG..eagvpffsisGsdfvemfvGvGasrvrDlfeqa....kknaPc....iifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvha....kkvklaeevdlk..kvarrtpGfsGadlanlvneaallaa 277
                 ++lG    kG++l GpPG GktL+a+ +    +a  p   + G + ++ fvG   ++vr lf +a    k + P     ii  De D++ r+rg +  g g    +  +nqlL+ +DG ++ ++++++  tnr d++D+a+ rPGr++ +v + +Pd kgr +il++h+    ++++  +ev+++  ++a+r   fsGa+la lv  a  +a 
  MMETSP1174-20130828|3612_1  75 EQLGLAHVKGMILFGPPGCGKTLIARQIGKvlNAREPK-IVNGPEILDKFVGGSEEKVRALFAEAeaeeKAEGPNsmlhIIIFDEFDSLCRSRGSSgDGVGGGVHDTVVNQLLAKIDGVDSLNNILIIGMTNRMDMIDTAIKRPGRLEVHVEIGLPDTKGRLQILTIHTapmrENKRTTDEVEARlpELAERSKNFSGAELAGLVRSAKDMAL 286
                 57999999*******************97632566664.589********************987333233456345558999**********987666666788899************************************************************7333234455566665444******************99876664 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.8e-06
   TIGR01241  91 GvllvGpPGtGktLlakavaGeagvpffs.isGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiD 158
                  vll G+P tGkt la   a e+g pf++ is   ++        + ++ +f +a ++  +ii++D+i+
  MMETSP1174-20130828|3612_1 366 SVLLEGDPLTGKTALAAHAAVESGFPFIRlISAEPLIGKSETAKCAHIKQIFMDAYRSPLSIILLDDIE 434
                 69**************************835777788888888999************99******997 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     4e-10   1.2e-07     312     430 ..      82     209 ..      71     219 .. 0.69
   2 ?   -0.7   0.0      0.29        85     315     338 ..     367     389 ..     353     461 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 4e-10
   TIGR03922 312 skHlllaGPPGtGkttiArvvakiyaGl..gvlrkpevrEv...sRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfG....leaidtLLarlEndRdrlvviiAGYekdlDk 430
                  k ++l GPPG Gkt iAr ++k++      +++ pe+ +      ++ +    +e+ea+ ++   +++  ++ +DE+ +L   r  ++d +G      ++++LLa+++       ++i G ++ +D 
  MMETSP1174-20130828|3612_1  82 VKGMILFGPPGCGKTLIARQIGKVLNARepKIVNGPEILDKfvgGSEEKVRALFAEAEAEEKAEGPNSMLHIIIFDEFDSLCRSRGSSGDGVGggvhDTVVNQLLAKIDGVDSLNNILIIGMTNRMDM 209
                 5679********************98631135555555442111122233333444444444444556778999*********999999998833334689999999987555445667788888775 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.29
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaG 338
                 +ll G P tGkt++A   a + +G
  MMETSP1174-20130828|3612_1 367 VLLEGDPLTGKTALAAH-AAVESG 389
                 68999*******99853.344444 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.2e-06    0.0021      31      66 ..      83     119 ..      74     123 .. 0.84
   2 !    4.7   0.0    0.0096       2.8      23      64 ..     356     399 ..     342     465 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.2e-06
   TIGR00635  31 dhvllyGPPGlGkttlakiiakelgv.klkitsgpal 66 
                   ++l+GPPG Gkt +a+ i k l++ + ki++gp++
  MMETSP1174-20130828|3612_1  83 KGMILFGPPGCGKTLIARQIGKVLNArEPKIVNGPEI 119
                 4589********************9725799999976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0096
   TIGR00635  23 akkrkea.ldhvllyGPPGlGkttlakiiakelgvk.lkitsgp 64 
                  k+r+ + +  vll G P  Gkt+la   a e g   ++++s+ 
  MMETSP1174-20130828|3612_1 356 VKTRDRTpVMSVLLEGDPLTGKTALAAHAAVESGFPfIRLISAE 399
                 555554315679***************99999876436666653 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00041      0.12      42      66 ..      84     108 ..      72     114 .. 0.88
   2 ?    4.2   0.0     0.012       3.5     129     180 ..     150     211 ..     131     216 .. 0.75
   3 ?   -0.7   0.0      0.36     1e+02      41      60 ..     365     384 ..     343     387 .. 0.80
   4 ?   -2.8   0.0       1.6   4.6e+02     130     142 ..     425     437 ..     405     439 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
   TIGR02928  42 nvliyGktGtGKtavtkkvlkelee 66 
                  ++++G++G+GKt++++++ k l++
  MMETSP1174-20130828|3612_1  84 GMILFGPPGCGKTLIARQIGKVLNA 108
                 5899***************998876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.012
   TIGR02928 129 dsliivLDEiDklvkkeade...........lLyeLs.raeengdlekakvsvigisndlkfle 180
                 +  ii+ DE+D+l+++ +++           ++ +L+ +++  ++l+  ++ +ig++n +++++
  MMETSP1174-20130828|3612_1 150 MLHIIIFDEFDSLCRSRGSSgdgvgggvhdtVVNQLLaKIDGVDSLN--NILIIGMTNRMDMID 211
                 5679**********877766678888888886655541564444444..799999999888876 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.36
   TIGR02928  41 snvliyGktGtGKtavtkkv 60 
                  +vl+ G + tGKta + + 
  MMETSP1174-20130828|3612_1 365 MSVLLEGDPLTGKTALAAHA 384
                 4799***********98875 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 1.6
   TIGR02928 130 sliivLDEiDklv 142
                   ii LD+i++lv
  MMETSP1174-20130828|3612_1 425 LSIILLDDIERLV 437
                 5699*******97 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.1e-05     0.015      42      67 ..      82     107 ..      55     201 .. 0.91
   2 ?    1.9   0.0     0.069        20      34      60 ..     356     382 ..     335     387 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.1e-05
   TIGR02881  42 vlhmifkGnPGtGkttvarllaklfk 67 
                 v  mi+ G PG Gkt +ar ++k+++
  MMETSP1174-20130828|3612_1  82 VKGMILFGPPGCGKTLIARQIGKVLN 107
                 4569*******************986 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.069
   TIGR02881  34 eglkaekqvlhmifkGnPGtGkttvar 60 
                  + ++   v+ ++++G+P tGkt++a 
  MMETSP1174-20130828|3612_1 356 VKTRDRTPVMSVLLEGDPLTGKTALAA 382
                 455666778999***********9985 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.6e-05    0.0046     354     379 ..      83     108 ..      73     116 .. 0.85
   2 ?   -1.8   0.0      0.56   1.6e+02     343     383 ..     352     394 ..     339     396 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
   TIGR00763 354 kilclvGPPGVGKtSlaksiAkalnr 379
                 k ++l GPPG GKt +a+ i k+ln 
  MMETSP1174-20130828|3612_1  83 KGMILFGPPGCGKTLIARQIGKVLNA 108
                 447899******************96 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.56
   TIGR00763 343 avkklrkklkgkil..clvGPPGVGKtSlaksiAkalnrkfvr 383
                  v++ + + + +++   l G P  GKt+la   A   +  f+r
  MMETSP1174-20130828|3612_1 352 CVNQVKTRDRTPVMsvLLEGDPLTGKTALAAHAAVESGFPFIR 394
                 6777777777887633689***********9888777767766 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0026      0.76      25      46 ..      86     107 ..      78     132 .. 0.77
   2 ?    5.0   0.0     0.011       3.3      22      53 ..     365     396 ..     351     417 .. 0.82
   3 ?   -2.1   0.0       1.6   4.8e+02     218     242 ..     524     548 ..     506     565 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0026
   TIGR02640  25 hlrGPaGtGktslalhvakkrd 46 
                  l GP G+Gkt +a+++ k ++
  MMETSP1174-20130828|3612_1  86 ILFGPPGCGKTLIARQIGKVLN 107
                 588*************999765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.011
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvlln 53 
                 ++v l G   tGkt+la h a + + P + l 
  MMETSP1174-20130828|3612_1 365 MSVLLEGDPLTGKTALAAHAAVESGFPFIRLI 396
                 5788999999************9999988665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.6
   TIGR02640 218 egdektsglraslmiakvataedid 242
                 +g  +  g++  lmia++a  +d d
  MMETSP1174-20130828|3612_1 524 SGSTTDIGIKKLLMIAEMARVDDDD 548
                 677788899999****999877644 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00014     0.041      48      73 ..      83     108 ..      58     115 .. 0.83
   2 ?    0.2   0.0      0.21        61     231     271 ..     134     174 ..     127     195 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   TIGR00390  48 knilmiGstGvGkteiarrlaklaea 73 
                 k +++ G+ G Gkt iar++ k+ +a
  MMETSP1174-20130828|3612_1  83 KGMILFGPPGCGKTLIARQIGKVLNA 108
                 8899*******************998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.21
   TIGR00390 231 lvdseeikqeavdrveesGiifideidkiakkgessgadvs 271
                 l  + e +++a        ii  de d ++++  ssg+ v 
  MMETSP1174-20130828|3612_1 134 LFAEAEAEEKAEGPNSMLHIIIFDEFDSLCRSRGSSGDGVG 174
                 55555556666666666789999*******99977766553 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     3e-05    0.0089     211     235 ..      82     106 ..      73     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3e-05
   TIGR00368 211 ghnllllGPPGsGktllakrlqgll 235
                    ++l+GPPG Gktl+a+++  +l
  MMETSP1174-20130828|3612_1  82 VKGMILFGPPGCGKTLIARQIGKVL 106
                 5679***************998887 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.6e-05     0.019      38      66 ..      84     112 ..      56     118 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-05
   TIGR02397  38 ayLfsGprGvGKTsiArilAkalNCenke 66 
                   ++ Gp G+GKT iAr + k+lN ++++
  MMETSP1174-20130828|3612_1  84 GMILFGPPGCGKTLIARQIGKVLNAREPK 112
                 46788*******************98865 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0012      0.35       4      27 ..      86     109 ..      84     117 .. 0.87
   2 ?    1.9   0.0      0.14        42       1      29 [.     365     393 ..     365     403 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0012
   TIGR02173   4 visGpPGsGkttvakilaeklslk 27 
                 ++ GpPG Gkt +a+++ + l+ +
  MMETSP1174-20130828|3612_1  86 ILFGPPGCGKTLIARQIGKVLNAR 109
                 567***************999865 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.14
   TIGR02173   1 miivisGpPGsGkttvakilaeklslkli 29 
                 m + + G P +Gkt++a + a + ++ +i
  MMETSP1174-20130828|3612_1 365 MSVLLEGDPLTGKTALAAHAAVESGFPFI 393
                 678999************99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.21s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|3610_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 2052.90
//
Query:       MMETSP1174-20130828|3617_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 432.63
//
Query:       MMETSP1174-20130828|3623_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066    9.1   0.8      0.078    8.9   0.5    1.0  1  TIGR00920 2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase


Domain annotation for each model (and alignments):
>> TIGR00920  2A060605: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5   1.9e-05     0.078     560     604 ..       3      45 ..       2      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 1.9e-05
   TIGR00920 560 lvastnrGcralslaGgvksrvladGmtrgPvvrlPsvaeaaevk 604
                 l a+ nr +r l  + g+ s   a+Gmt +P v   ++a+aa++ 
  MMETSP1174-20130828|3623_1   3 LDAAENRDLRFLGCCCGAASA--AVGMTDAPAVAAAAAARAAAAA 45 
                 56899**********999995..88***********999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 279.69
//
Query:       MMETSP1174-20130828|3628_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 189.38
//
Query:       MMETSP1174-20130828|3630_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 355.80
//
Query:       MMETSP1174-20130828|3629_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-29   97.1   4.9      1e-28   96.9   3.4    1.1  1  TIGR00517 acyl_carrier: acyl carrier protein
    0.00016   16.3   0.3    0.00016   16.3   0.2    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
     0.0024   16.2   0.0     0.0034   15.7   0.0    1.2  1  TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein
  ------ inclusion threshold ------
      0.017   10.3   0.0      0.017   10.3   0.0    1.0  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
        3.4    6.0   9.0       0.82    7.9   0.3    2.7  3  TIGR00855 L12: ribosomal protein L7/L12


Domain annotation for each model (and alignments):
>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   3.4   1.3e-31     1e-28       3      75 ..      59     131 ..      57     133 .. 0.96

  Alignments for each domain:
  == domain 1    score: 96.9 bits;  conditional E-value: 1.3e-31
   TIGR00517   3 eiiekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyiee 75 
                 +++e+  +i++eql+v++++vt++a+f++DLgaDSLD+vE+vm++EeeF++eipde Ae++++ +dav++i e
  MMETSP1174-20130828|3629_1  59 TTEEQLIEIVAEQLGVEAAQVTNEANFAADLGADSLDVVEMVMKIEEEFGVEIPDERAEEVQNLSDAVKLITE 131
                 6899*******************************************************************87 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   1.9e-07   0.00016    1205    1275 ..      53     124 ..      14     134 .] 0.65

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.9e-07
   TIGR02813 1205 asvndsaleqvmlevvaektgyptemlelemdmeadlgidsikrveilgsvqeii.ndlpelspedlaelrt 1275
                  + v +++ e+ ++e+vae+ g  +  +  e ++ adlg ds+  ve++  ++e +  ++p+   e++ +l  
  MMETSP1174-20130828|3629_1   53 SPVLSATTEEQLIEIVAEQLGVEAAQVTNEANFAADLGADSLDVVEMVMKIEEEFgVEIPDERAEEVQNLSD 124 
                  234455577788888888888888888888888888888888888888888776624666666665555444 PP

>> TIGR04069  ocin_ACP_rel: peptide maturation system acyl carrier-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.1e-06    0.0034      24      62 ..      78     116 ..      60     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.1e-06
   TIGR04069  24 elkeknllgeklglsprdLvlllldvekqFnikipeeei 62 
                 ++ ++  +  +lg    d+v + + +e++F+++ip e  
  MMETSP1174-20130828|3629_1  78 QVTNEANFAADLGADSLDVVEMVMKIEEEFGVEIPDERA 116
                 4678888999*************************9865 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.1e-05     0.017     842     900 ..      53     112 ..      23     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.1e-05
   TIGR03443 842 eeeeltetekeirdlWlevlPnkpatiskddsff.dlGGhsilatrlifelrkklvvevp 900
                 +    ++te+++ ++ +e l  ++a+++++ +f  dlG  s+    +++++ +++ ve+p
  MMETSP1174-20130828|3629_1  53 SPVLSATTEEQLIEIVAEQLGVEAAQVTNEANFAaDLGADSLDVVEMVMKIEEEFGVEIP 112
                 4445567999***********************55************************9 PP

>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.73     6e+02      29      48 ..      17      36 ..      14      42 .. 0.65
   2 ?    3.1   0.3     0.031        26      22      45 ..      62      85 ..      52      93 .. 0.72
   3 ?    7.9   0.3     0.001      0.82      18      35 ..      93     110 ..      88     126 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.73
   TIGR00855 29 EekfgvsAaaavaaaaaaaa 48
                + kf  +A+a+  + + a+a
  MMETSP1174-20130828|3629_1 17 NMKFIATATAIALVFSGASA 36
                56788888887766666554 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.031
   TIGR00855 22 selvkalEekfgvsAaaavaaaaa 45
                ++l++ + e+ gv Aa +   a  
  MMETSP1174-20130828|3629_1 62 EQLIEIVAEQLGVEAAQVTNEANF 85
                689999999999999876554443 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.001
   TIGR00855  18 vlelselvkalEekfgvs 35 
                  l+++e+v ++Ee+fgv 
  MMETSP1174-20130828|3629_1  93 SLDVVEMVMKIEEEFGVE 110
                 589*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 453.50
//
Query:       MMETSP1174-20130828|3635_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1178.00
//
Query:       MMETSP1174-20130828|3637_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 259.85
//
Query:       MMETSP1174-20130828|3639_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.75    6.6   6.5       0.52    7.1   3.8    1.3  1  TIGR01107 Na_K_ATPase_bet: Na+/K+ ATPase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01107  Na_K_ATPase_bet: Na+/K+ ATPase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.8   0.00013      0.52      33      57 ..      55      79 ..      43      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00013
   TIGR01107 33 gksWvlillfylvfygvlaglfilt 57
                ++ W +i++ + vfyg+l+ +fil 
  MMETSP1174-20130828|3639_1 55 PHDWQMIFFLFFVFYGFLTIFFILM 79
                568****************999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|3642_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|3648_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|3651_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|3653_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1036.36
//
Query:       MMETSP1174-20130828|3666_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 621.13
//
Query:       MMETSP1174-20130828|3661_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   13.7   0.0     0.0031   13.1   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
  ------ inclusion threshold ------
      0.025   11.5   0.0      0.043   10.7   0.0    1.3  1  TIGR03972 rSAM_TYW1: wyosine biosynthesis protein TYW1


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.5e-06    0.0031     396     478 ..      99     182 ..      87     192 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.5e-06
   TIGR04121 396 ltlAvgegfdadelfeevrsaaayaelsreefd.evldfvatGgkaLkaYdeykkvereedglyrvkdkriarrhrlniGtIvs 478
                 + +    ++++ e ++++ +a+ +a+l+++e +  v++f+ tG+++ + Y+ +  ++ ++ ++++   +++a+ h  niG+I +
  MMETSP1174-20130828|3661_1  99 VIVSSDVAVAQVESIKNMPHAVFFAKLKNNEIHpYVVTFLFTGSNTNELYKAFDELVSRRADVLHSIAAEVATSHAGNIGVIGH 182
                 55555556666777888889999****9998762799**********************99********************965 PP

>> TIGR03972  rSAM_TYW1: wyosine biosynthesis protein TYW1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.1e-05     0.043     153     230 ..     309     385 ..     269     395 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.1e-05
   TIGR03972 153 vtnGtlpevlekleeePtqlYvsldapdkelykkiarpvvedaWerileslellkslktrtviRitlvkglndkeeee 230
                 v    lp+++ +l e+P+  Y s++  d + ++++ r ++ ++W      +  l+s+ +   +R+ ++k+ nd++ +e
  MMETSP1174-20130828|3661_1 309 VNSLDLPHIVSSLTEQPSPAYFSFT-KDGDEWSTVERFQKMESWAVRSYHVTALESKINSLKLRMQIIKSSNDNKAAE 385
                 4555679999*************97.69999**************************99999***********98874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 1387.04
//
Query:       MMETSP1174-20130828|3668_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   14.2   0.1      0.011   13.4   0.1    1.4  1  TIGR00985 3a0801s04tom: mitochondrial import receptor subunit
  ------ inclusion threshold ------
      0.046   11.7   2.0      0.058   11.3   0.2    2.1  3  TIGR03504 FimV_Cterm: FimV C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00985  3a0801s04tom: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   5.2e-06     0.011      32      96 ..      74     139 ..      71     166 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.2e-06
   TIGR00985  32 rndPefrkklrrrakkq.akaekqeeelakekldkvvrelvaelakepvpsdaeekeafFleevql 96 
                   dPe+r+++r+ + +  a   + e +la+ k++ ++ + + +++++  + +a e  + +lee+q 
  MMETSP1174-20130828|3668_1  74 VCDPEHRRVVRNTRSETfAAVTEAEMHLATAKVHATIPSRSRQVKQDDLVMQATEAVRCYLEELQV 139
                 579********98877625566777899**********************************9985 PP

>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.8   1.6e+03      12      20 ..       2      10 ..       2      11 .. 0.85
   2 ?   -3.7   0.0       1.4   2.9e+03      16      24 ..      58      66 ..      58      68 .. 0.79
   3 ?   11.3   0.2   2.8e-05     0.058       2      27 ..     195     220 ..     194     221 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.8
   TIGR03504 12 mGDkegAre 20
                +G+ e+A+e
  MMETSP1174-20130828|3668_1  2 LGEYESAIE 10
                5999***87 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.4
   TIGR03504 16 egArelLeE 24
                + A e+LeE
  MMETSP1174-20130828|3668_1 58 DRAVETLEE 66
                568899998 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 2.8e-05
   TIGR03504   2 KLDLAkaYiemGDkegArelLeEVie 27 
                 K +LA+ +++ GD e+A +l +E+++
  MMETSP1174-20130828|3668_1 195 KSNLAELCMAAGDDETAARLQKEILA 220
                 558*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1060.46
//
Query:       MMETSP1174-20130828|3672_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 292.95
//
Query:       MMETSP1174-20130828|3670_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       723  (0.176255); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.22u 0.18s 00:00:01.40 Elapsed: 00:00:00.84
# Mc/sec: 1153.33
//
Query:       MMETSP1174-20130828|3673_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 509.75
//
Query:       MMETSP1174-20130828|3674_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 622.99
//
Query:       MMETSP1174-20130828|3675_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|3679_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 855.80
//
Query:       MMETSP1174-20130828|3680_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|3683_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.62
# Mc/sec: 295.91
//
Query:       MMETSP1174-20130828|3685_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1174-20130828|3686_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 221.98
//
Query:       MMETSP1174-20130828|3688_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|3691_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   14.2   0.5     0.0046   13.5   0.0    1.4  2  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-06    0.0046     210     300 ..      15      99 ..       3     107 .. 0.74
   2 ?   -2.6   0.0     0.087   3.6e+02     193     233 ..     123     161 ..     118     188 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-06
   TIGR00939 210 dkeaqedetkkelrskaeendepakgdkeskteelsaekepeskeeeevelktsvftvlkkvkllllavvlvFtvTLsvFPavavavtsst 300
                  +++qe+e+  e  sk+e++++  +    + +    +e e++  ++  ++l+++    + ++k++ +a++++ t T  v P+v++   + +
  MMETSP1174-20130828|3691_1  15 PRQQQEQESDDERVSKDEKKNIEMQYAGIDTE----SEDEVDM-DGMRKRLRKKNQGYFGNIKWTNVAILFMLTGTA-VLPVVMFIADNAS 99 
                 26889999999999999955555554444444....4444444.67788899999*****************99998.99***99766554 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.087
   TIGR00939 193 lllrklkfarkylekkldkeaqedetkkelrskaeendepa 233
                 ++ +k +  ++y++++   e+ ed+ k  l+ +++ ++  +
  MMETSP1174-20130828|3691_1 123 VATPKIRLTQFYEKHNP--EKLEDVEKVMLKYAGDYKTMTK 161
                 56667777777777775..4667777777777777555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 569.20
//
Query:       MMETSP1174-20130828|3695_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 259.72
//
Query:       MMETSP1174-20130828|3698_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 234.17
//
Query:       MMETSP1174-20130828|3697_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|3696_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-100  332.6   0.0    1.3e-99  331.9   0.0    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.6e-98  327.4   0.0    6.4e-98  326.5   0.0    1.3  1  TIGR02053 MerA: mercuric reductase
    3.5e-59  198.7   0.0    6.6e-59  197.8   0.0    1.4  1  TIGR03452 mycothione_red: mycothione reductase
    3.4e-55  185.2   0.0    6.8e-55  184.2   0.0    1.4  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    3.7e-51  172.5   0.0    7.1e-51  171.6   0.0    1.4  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    9.9e-32  107.9   0.1    5.8e-31  105.4   0.1    1.9  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.4e-31  107.7   0.0    2.3e-31  107.0   0.0    1.3  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    3.3e-17   60.2   0.0    1.2e-14   51.7   0.0    3.6  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.5e-17   59.0   0.0    6.1e-16   55.8   0.0    2.3  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.6e-08   32.0   0.0    1.4e-06   25.5   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
      2e-08   31.2   0.4    0.00094   15.9   0.0    2.9  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    5.1e-08   29.7   0.0    0.00025   17.6   0.0    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      1e-07   28.9   0.1     0.0019   14.9   0.0    3.1  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.6e-07   26.7   0.0      0.016   11.4   0.0    3.1  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    7.3e-07   26.2   0.0      0.012   12.4   0.0    2.9  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    6.3e-06   22.8   0.0      0.013   12.0   0.0    3.1  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    1.1e-05   22.0   0.0     0.0016   14.9   0.0    2.3  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      2e-05   22.2   0.1      0.021   12.3   0.2    2.3  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    2.2e-05   21.5   0.3     0.0047   13.9   0.4    2.2  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    8.4e-05   19.3   2.5       0.54    6.8   0.0    3.1  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00012   17.5   0.0     0.0038   12.5   0.0    2.6  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00012   18.8   1.4        0.1    9.2   0.6    3.0  4  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0009   16.0   0.0     0.0019   14.9   0.0    1.5  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    0.00091   16.1   0.3     0.0056   13.5   0.1    1.9  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0032   14.3   0.7     0.0063   13.4   0.5    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0045   13.5   1.9       0.61    6.5   0.7    2.2  2  TIGR02734 crtI_fam: phytoene desaturase
      0.008   12.7   0.5      0.036   10.5   0.2    1.9  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0085   12.7   0.2      0.012   12.2   0.2    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
  ------ inclusion threshold ------
      0.014   11.0   0.0        0.3    6.6   0.0    2.3  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
      0.017   12.2   0.1        1.1    6.2   0.1    2.5  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.024   11.2   0.1        1.5    5.2   0.1    2.2  2  TIGR00551 nadB: L-aspartate oxidase
      0.025   11.5   1.3        2.5    4.9   0.0    2.2  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.042    9.8   0.3      0.077    8.9   0.2    1.4  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.064   10.1   0.8        4.2    4.2   0.6    2.1  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
       0.12    8.4   0.7          4    3.4   0.5    2.0  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
        0.2    8.7   2.4        5.1    4.1   1.1    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.9   0.0  1.1e-101   1.3e-99       2     455 ..      94     562 ..      93     565 .. 0.93

  Alignments for each domain:
  == domain 1    score: 331.9 bits;  conditional E-value: 1.1e-101
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelkeakelgieven..vkldlekllerkekvvkkl..vgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplk..leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevv...............veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaal 455
                 yd+vviG+G +G  + i a  lg+k al+e++++GG ClnvGC P+Ka+++ a  v+e+k+a+e+g+ + +  v++d+ +++ r +    ++   +Gv+   +    +v++G+a++ ++++v v++ +    + ++ +++AtG++ + +p++   ++ +   +t+++ ++l+e+p ++ ++G+G iG+E+a+ +a++G++vt++e+ +++lp +d + + +lk++l+  +++i  + k++++e    + +               v+  +++ +++e e++L a Gr pn++++gl+++gve+d+r  ++vd++++t vp+iy +GD++++ +  h A  ++  a+++++   k++ ++ + P ++ytePe+a vGl e+++ ++gi++++ k +++ + +    + + Gfvk+ + + t+ ilGa+ivg++a ++ise+++ +++++ +++la tihp Pt +Eai + a++  
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGVIIPEgeVRVDFPAIMRRMRMLRASIapHDGVERYGRDFCEDVFQGNARFIGPDSVAVDGMD--APIFFDYAMVATGASAAVPPIPglRSVPH---LTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPREDPDAAALLKEELES-EMDIQYSVKINNIEYVGGDPTagaptkapwgcykvfVTLADGTDKVYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLKEKQQNILTPWCTYTEPEIAHVGLYEKEMDDRGIAYVSYKRDLKDVDRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEAIRQCAAQFW 562
                 9******************************************************************987778***********999888773369*******************************9..47*****************9986444444...899*************************************************************86.588888888887776554433344445566666665788888789************************************************************************99986577799999************************************************************************************************************9998765 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.5   0.0  5.6e-100   6.4e-98       1     454 [.      94     562 ..      94     565 .. 0.91

  Alignments for each domain:
  == domain 1    score: 326.5 bits;  conditional E-value: 5.6e-100
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas...vgllaaevevdleelleqkkevveelR.keKYedvlesydavdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrngg............kklvtveknd.skkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAlaFy 454
                 ydlv+iG G a++ ++i a+ lg+k +l+er  +GG C nvGC PSKa++r a++ +  k a    v + + ev+vd+ +++++++++ + +  ++  e    ++   d+++g+a+f ++  v vd   + +  + +++AtGa++avP+ipGL+ +  lt++++++l+++p ++ +iG+g i++Elaq +ar Gs+vt+ ++  +ll++e+p+++a ++e l++e ++++ s+k+++++   g+              +v v+  d ++k  e +++l AtGR pnv g++L++vgv++d+r ++ vd++ +t  p+iy  GD+ +  ++ ++A  +   a  n++ g ++k +    P  ++t+Pe+A vGl e+e+   gi++ s   +l++v r + ++ + G++K+ a ++t  +lg+ +v+++A+++i+e ++ +++g+ +  l+ t+h+++t aE+++  A  F 
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAefgVIIPEGEVRVDFPAIMRRMRMLRASIApHDGVERYGRDF-CEDVFQGNARFIGPDSVAVDGMDAPIFFDYAMVATGASAAVPPIPGLRSVPHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPREDPDAAALLKEELESE-MDIQYSVKINNIEYVGGDptagaptkapwgCYKVFVTLADgTDKVYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLKEKQQNILTPWCTYTEPEIAHVGLYEKEMDDRGIAYVSYKRDLKDVDRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEAIRQCAAQFW 562
                 9*****************************************************9999988777444456788999***********998876255555555666.589*****************9889999999**************************************************************************************998.78888888888887654322222211111134555555550566669*******************************************************************************9999************************************************************************************************************9888874 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   5.8e-61   6.6e-59       2     432 ..      93     542 ..      92     557 .. 0.87

  Alignments for each domain:
  == domain 1    score: 197.8 bits;  conditional E-value: 5.8e-61
   TIGR03452   2 hydliiiGtGsGn..silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevkesarlgi...daeidsvrwpdivsrvfedridpiaasG.eeyrrgdktpnidvyesharfvgrktlrtedgee.itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakkkfdvrlgrnvtaae.....qddd.......g...vtlelddGst..veadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelar 432
                  ydl++iG+G     s++  +   k+ a++e+  +GG clnvGc p+k  + +a   +evk++a +g+   ++e+ +v++p i++r+   r     + G e+y r       dv++ +arf+g+  + ++  +  i  d  ++a+G+ +++p++    +v + tn+d   l+elp ++ ++G+G i +e+a+ +  +G++vt+     +ll + d d ++ ++e  + ++d++ + ++ + e      ++        g   v ++l dG++   e++ +l atGrvpn   + +++ Gve d+   v+vd++ +t + ++++ Gd +sp+++ h a+ +ar   +n+    + +k +    p + +t+p ia+vGl e+e  ++G   +   +d  dv        + g++k+ a ++t  +lGa i+G+ a  +i ++   +  g+   +la 
  MMETSP1174-20130828|3696_1  93 RYDLVVIGAGVAGllSVICAKALGKKAALIERHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGViipEGEV-RVDFPAIMRRMRMLRASIAPHDGvERYGRDF---CEDVFQGNARFIGPDSVAVDGMDApIFFDYAMVATGASAAVPPIPGLRSVPHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPREDPDAAALLKEELESEMDIQYSVKINNIEyvggdPTAGaptkapwGcykVFVTLADGTDkvYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLK-EKQQNILTPWCTYTEPEIAHVGLYEKEMDDRGIAYVSYKRDLKDVDRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAG 542
                 7*********7643488999999********************************************84333444.799******9998887777666626676655...78*****************988878999****************99999****************************************************************999999999988776543311111111012222332334999****985226899****************************************************************99999887533.33445678**************************99999***********99**************************************99999888874 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0   5.9e-57   6.8e-55       3     441 ..      94     553 ..      93     556 .. 0.85

  Alignments for each domain:
  == domain 1    score: 184.2 bits;  conditional E-value: 5.9e-57
   TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeedlvGGtcvirGcvPkkllvyasefaeeledakgyGwe..vekaefdwkkllakkd...keiarlsglykkllakagvellegraelvdantvevledgktytaekiliavGgrpvkpelPGael..aitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleer.....Girillktvl......ksiekvddG.lk..vtls..kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaee 441
                 ydl viGaG  G+ +   a alG+k a+ e++++GG c+  Gc P k ++ +++  +e+++a+++G     +++++d+  ++++       ia  +g+ +   ++   ++++g+a+ ++++ v v      +  +  ++a+G+ +  p +PG      +t ++ f+le+lP ++ ++G+G i++e+a+ ++ +G++vt++    ++l + d d  a l+eele +      ++i   + +       + +k + G  k  vtl+   d+ ++++++l atGrvPnv g+gl+++Gve +++  + vd++ +t vp+iy+ Gd +   ++t  a  +a++ +   f +   k +  l     +++Pe+a vGl e+e  ++     + y+  ++ +           ++k+   e +d +lGa +vG+ a+++i  ++i+++ G+  ++   t+  +P+sae 
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGVIipEGEVRVDFPAIMRRMRmlrASIAPHDGVER-YGRDFCEDVFQGNARFIGPDSVAVDGMDAPIFFDYAMVATGASAAVPPIPGLRSvpHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPREDPDAAALLKEELESEmdiqySVKINNIEYVggdptaGAPTKAPWGcYKvfVTLAdgTDKVYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLKEKQQNILTPWCTYTEPEIAHVGLYEKEMDDRG-IAYVSYKRDLKDVDRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEA 553
                 9*****************************************************************9844588999999888765411145555556544.3455667899**************996677778999***************9862369*********************************************************999999864211113333322211111111344677778644114444555677899**************************************************************************9999999999999****************98887.55566777788877776666677899****************************************************96 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   6.2e-53   7.1e-51       2     445 ..      93     553 ..      92     556 .. 0.84

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 6.2e-53
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcvPkkvmwyaaslaelledaadyGfkseken.kfnfkelkek.rdayvdrlngiyqknlekekv.elieGyaeftkdetvevngke..ytakhiliatGgkpsipeniPGael..gldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledg...............keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtssee 445
                 +yd++viG G  G+ s+  a  +G ka+l+e + +GG c+nvGc P k + ++a  ++ ++ aa++G+   + + + +f+ + ++ r    + +     + + ++   ++ +G a+f + ++v v+g +  +  ++ ++atG+ + +p  iPG      l+ ++ff+leelP r+ ++GaG i++ela ++  +Gs+  ++    + l + d   +  + eele ++++++   k+ ++e    + +    +++                ++ ++++++ a+Gr+pn+ ++gl+ vgv+ d++  ++vd++  t v++iy+ Gd     ++t  a    r+  + +f g ++++      P   ++ Pei+ vGl eke +++ G   v  yk ++  +     +  +   +k+ +a+  + ++G  i+G ++ +++   ++ ++ G   + +  t+  +Pts+e 
  MMETSP1174-20130828|3696_1  93 RYDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGVIIPEGEvRVDFPAIMRRmRMLRASIAPHDGVERYGRDFCeDVFQGNARFIGPDSVAVDGMDapIFFDYAMVATGASAAVP-PIPGLRSvpHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPREDPDAAALLKEELE-SEMDIQYSVKINNIEYVGGDPTAGAPTKApwgcykvfvtladgtDKVYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLKEKQQ-NILTPWCTYTEPEIAHVGLYEKE-MDDRGIAYVS-YKRDLKDVDRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEA 553
                 7******************************************************************9887554599**998754133222222222223333443326789***************99778899*************.9***875235899***********************************999988888888878776666666654.56788888888888754433222222222344444455444556688999*************************************************************999*999999988776654.4578*****************98.7899*99985.999999998877777777788999999999******************************************996 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.1   5.1e-33   5.8e-31       3     480 ..      93     565 ..      91     569 .. 0.79

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 5.1e-33
   TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldi..ndsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielc..issneafyleeapkrvltvgggyisvefagifnaykavggkvdla....yrndmilrg.fdselrkeltkq..lvangidvrtnenpa.kveknadgskh..vvfesgkel..dvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmrtpayyyikg 480
                  ydlvvigag  gl +   a +l kk  a+++        +y  +gg c+nvgc p k ++  a+ + +++ +a fg  +    v+ ++ a++       + i   d  e   +d    + f+g   +   + v v     p       +  +y ++atg+      i+g   +  ++ n+ f lee p r+  +g g i +e+a  +  + ++    +++     r+d+     +  el  e+  q  ++ n i+    +  a   +k + g+ +  v++  g++   + + ++ a gr+p    + ld+vgve  ++  ++vd++ +t v+niy+ gd +    +t  a  +  + +  +f     k +      + ++ p i  +gl e+e   +      y+  +  +         k   vki +  +   +lg  ++g s+ ++i  ++ic++ +  +s +  ti  +ptsae +   +  a ++++g
  MMETSP1174-20130828|3696_1  93 RYDLVVIGAGVAGLLSVICAKALGKK-AALIER-------HY--MGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGVIIPEGEVRVDFPAIMRRMRMLRASIapHDGVERYGRDF-CEDVFQGNARFIGPDSVAVDGMDAP-------IFFDYAMVATGASAAVPPIPGLRSVphLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICpqllPREDPDAAAlLKEELESEMDIQysVKINNIEYVGGDPTAgAPTKAPWGCYKvfVTLADGTDKvyECEAILNATGRVPNVCGIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRNMFLGLKEKQQNILTPWCTYTEPEIAHVGLYEKEMDDRGIAYVSYKRDLKDV-DRCKCEGVKAGFVKISAAEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEAIR--QCAAQFWQRG 565
                 69****************99999887.566652.......34..7**********************************************9987665544441145666555554.4467788888877777777544333.......5579*****************98754489***************************9998887776666655222247776544414566776666552256788887665544415578888886511567777665115578999*******************************************************99998888888877777777777888899************98765443333344443333.3445556788899****99999********************************************874..3455666665 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0     2e-33   2.3e-31       2     465 ..      93     554 ..      92     567 .. 0.86

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 2e-33
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeq.vkhdweklskavqdrikslnfsyrval..rekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakel.sitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea...............kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
                  ydl+viG+G  Gl +   a +lg+k +l++         +  +GG c nvGc p k + + a   +++k + ++G  + e  v+ d+  +++ ++    s      v+   r+   + + + a+++++d +      + +  +  ++ ++atG    +p  i+G + +  +t +d+f l++ p +  ++Ga+ + +e a  +a +g +vt+  +   ll   d d a  +ke l+ + + ++  v+ +++e v+                kv v+ +d +   + e +++l a Gr++++ +++l++vgv+ +++ g   +d+  +t vp+iy+ Gd +    ++t  a    +   + +f + ke+ +    p + +t  e++ vGl e++ ++  G   v  +++++++++ +  +  +    ++k+    +  + ++G  +vGp ag+++  +++ ++ g+  ++l  ti  +p+sae  
  MMETSP1174-20130828|3696_1  93 RYDLVVIGAGVAGLLSVICAKALGKKAALIE---------RHYMGGDCLNVGCFPSKAIIRCARAVHEVKTAAEFGVIIPEGeVRVDFPAIMRRMRMLRASIAPHDGVERygRDFCEDVFQGNARFIGPDSVAVD---GMDAPIFFDYAMVATGASAAVP-PIPGLRSVpHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFeICPQLLPREDPDAAALLKEELESE-MDIQYSVKINNIEYVGGdptagaptkapwgcyKVFVTLADGT-DKVYECEAILNATGRVPNVCGIGLDTVGVEFDNRCGV-HVDDHFQTCVPNIYSCGDCASPF-KFTHAADWQARTAIRNMFLGLKEKQQNILTPWCTYTEPEIAHVGLYEKE-MDDRGIAYVS-YKRDLKDVDRCKCEGVK--AGFVKISA-AEGTDVILGATIVGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEAI 554
                 6***************************996.........6789********************************9997766*****999988776555554444444311555567899*********99764...45566777999***********.5***9987469***************************************973667788999***********9864.78888899999999988899*******************988.5667789***************************995.566666899*********99765.6788888788889999*********99999***************8755.6777877664.77788887777666655..67888765.567789******************************************986 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.22        25     150     181 ..      94     125 ..      87     127 .. 0.88
   2 !   51.7   0.0   1.1e-16   1.2e-14     104     417 ..     226     540 ..     223     548 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.22
   TIGR03385 150 ekvvviGgGyiglemvealkergkevtliers 181
                  ++vviG+G  gl  v  +k+ gk+  lier 
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERH 125
                 5789*********999999*********9985 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 1.1e-16
   TIGR03385 104 yDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekk.eielrln.eevksvege.............ekve.vltsg..kvyqaDlvilavGvkPnseli..kssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGtsivkfldltiaktGltenelkklnidyktve..vkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdl 417
                 +D+ +++tGA++ +++i+g        lr ++  ++ + +  ++   ++ +iG+G ig+e++  + + g +vt+ e   ++  +  D + a+ ++eele++ +i++ ++ ++++ v g+              kv  +l +g  kvy++++++ a+G  Pn+  i  +  +++ +++  + v+++fqt v+niy+ GD+a   ++     ++   A +a      + +   G + + + +l t      + +ia++Gl e+e+   +i y + +  +k+  + +   g k  ++k+ + + t  ilga +vG   +   i  +++ +++++  + l
  MMETSP1174-20130828|3696_1 226 FDYAMVATGASAAVPPIPG--------LRSVPHLTNNDFFNLEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQL-LPREDPDAAALLKEELESEmDIQYSVKiNNIEYVGGDptagaptkapwgcYKVFvTLADGtdKVYECEAILNATGRVPNVCGIglDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCASPFKFTHAA-DW--QARTA------IRNMFLGLKEKQQNIL-TPWCTYTEPEIAHVGLYEKEMDDRGIAYVSYKrdLKDVDRCK-CEGVKAGFVKISAAEGTDVILGATIVGPS-AGDMISEITICMQNGIGLSKL 540
                 8******************........4444444444444446778999*******************************9.6788************9873666655434555555542222222222221234347887644799**************9765337889*****************************988765443.33..23333......3344556666666666.455667899999999999999999999988762244444444.46788889999999999999999999988.777888899999888766655 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.6   1.8e+02     142     170 ..      95     123 ..      88     127 .. 0.81
   2 !   55.8   0.0   5.4e-18   6.1e-16      95     279 ..     224     417 ..     213     423 .. 0.81
   3 ?   -0.5   0.0      0.57        65     406     461 ..     516     572 ..     500     586 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.6
   TIGR02374 142 kaaviGgGLLGLeaaraLknlGldvsvie 170
                 + +viG+G+ GL +    k lG +   ie
  MMETSP1174-20130828|3696_1  95 DLVVIGAGVAGLLSVICAKALGKKAALIE 123
                 5689****999999999999998888776 PP

  == domain 2    score: 55.8 bits;  conditional E-value: 5.4e-18
   TIGR02374  95 lsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelek.kGltvlleketveivkes...vekaer........lrfkDGs..sleadlvvlaaGirPrde.Laa.eaGlkvndrrGiivndsmqtsdPdiyavGecae 279
                  ++D  ++atG+++ ++PipG        + t +D   le    r      iG+G +G+e a+++ ++G +v + e+ p+l+ +  D  a++lL++ele+ + +++ ++ + +e v+ +   +  ++         + ++DG+  + e + ++ a+G  P+   ++  + G++ ++r G+ v+d+ qt  P+iy+ G+ca+
  MMETSP1174-20130828|3696_1 224 IFFDYAMVATGASAAVPPIPGLRSV---PHLTNNDFFNLEELPPR---MCLIGAGPIGIELAQTMARFGSQVTIFEICPQLLPRE-DPDAAALLKEELESeMDIQYSVKINNIEYVGGDptaGAPTKApwgcykvfVTLADGTdkVYECEAILNATGRVPNVCgIGLdTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDCAS 417
                 689999***************7554...44566666666666555...589*******************************987.99999*******96379*************97743211111122333333899***733589************9742554257*****************************97 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.57
   TIGR02374 406 gallvealpdseqiCsCndvtkGalkaaiaegcstveelkactkagtsCGgC.kPLv 461
                  ++  + + ++ +iC  n++   +l   i+   ++ e++++c++     Gg   P+ 
  MMETSP1174-20130828|3696_1 516 VGPSAGDMISEITICMQNGIGLSKLAGTIHPYPTSAEAIRQCAAQFWQRGGMaTPVN 572
                 556677899999******************************987766665414444 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.04       4.5     142     171 ..      90     119 ..      76     133 .. 0.77
   2 !   25.5   0.0   1.2e-08   1.4e-06     144     282 ..     262     417 ..     226     424 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.04
   TIGR03169 142 seetkslavvGgGaagvElalalrkrlkkr 171
                 ++e  +l+v+G+G+ag+  +++ + + kk+
  MMETSP1174-20130828|3696_1  90 PKERYDLVVIGAGVAGLLSVICAKALGKKA 119
                 455569**********98777777766665 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.2e-08
   TIGR03169 144 etkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrlla.krgievlekeevtevede...................alllaegetleadavllatgakapaw...LaesglsldedGflavkktLqslshpevFaaGDcav 282
                  + ++  +G+G  g+Ela  +++   +  +  e      ++ll++  + + +l+k+ l+ + +i+   k +  e+  +                   +l  ++++ +e++a+l atg  +      L + g++ d++  ++v++++q+   p++++ GDca+
  MMETSP1174-20130828|3696_1 262 LPPRMCLIGAGPIGIELAQTMARFGSQVTIF-E----ICPQLLPREDPDAAALLKEELEsEMDIQYSVKINNIEYVGGdptagaptkapwgcykvfvTLADGTDKVYECEAILNATGRVPNVCgigLDTVGVEFDNRCGVHVDDHFQT-CVPNIYSCGDCAS 417
                 3348999***********9999877766655.2....44555555555555555555541223333333222222222345555556******9987777788999***********999875556*********************9.89*********96 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00015     0.017       1      38 [.      94     131 ..      94     144 .. 0.93
   2 !   15.9   0.0   8.2e-06   0.00094     145     276 ..     267     417 ..     264     433 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
   TIGR01292   1 ydviiiGaGpaGltaaiYaaranlktlliegkeaggql 38 
                 yd+++iGaG aGl + i a+  + k++lie++  gg  
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDC 131
                 79******************************999975 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 8.2e-06
   TIGR01292 145 avvGggdsAveealyLskiakkVtl......vhrrdklraekillerlkknekievllnst.veeikGdekve..........svkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrd 276
                 +++G g   +e a+ +++++++Vt+      +  r+   a+++l e+l+ + +i+  ++ + +e + Gd +            +v +   ++++++  +++++  a G  pn   +      +e d++  + vd++ +T v+ ++++GD+ +
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIfeicpqLLPREDPDAAALLKEELESEMDIQYSVKINnIEYVGGDPTAGaptkapwgcyKVFV-TLADGTDKVYECEAILNATGRVPNVCGIGLDtvgVEFDNRCGVHVDDHFQTCVPNIYSCGDCAS 417
                 678888889999999999999998833222234678888888899999888888877765414445555433211111111113433.378999999**************987554333689***************************87 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00054     0.061     200     248 ..      81     130 ..      13     137 .. 0.70
   2 !   17.6   0.0   2.2e-06   0.00025     355     492 ..     266     420 ..     262     433 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00054
   TIGR03140 200 aekaeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvaer.iGGq 248
                 + k++++   ke+yd++v+G+G ag  + i a   G k al+  + +GG 
  MMETSP1174-20130828|3696_1  81 GPKDRQNPVPKERYDLVVIGAGVAGLLSVICAKALGKKAALIERHyMGGD 130
                 444666777899****************************9976436776 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.2e-06
   TIGR03140 355 vaviGGGnsGieaaidlaGivehvtvlefadel......kadkvlveklkslsnvdiltsaktkeivgdg......dkvtglkyk...drsseeekkleldGvfvqiGlvpntef..lkda.velnrrGeividergrtsvkGifaaGdvttvpyk 492
                 + +iG G  Gie a  +a   ++vt++e   +l       a ++l e+l+s  +++  ++ +  e vg +       k     yk     + +  k  e + ++   G vpn     l+ + ve ++r  + +d + +t v+ i+++Gd+++ p+k
  MMETSP1174-20130828|3696_1 266 MCLIGAGPIGIELAQTMARFGSQVTIFEICPQLlpredpDAAALLKEELESEMDIQYSVKINNIEYVGGDptagapTKAPWGCYKvfvTLADGTDKVYECEAILNATGRVPNVCGigLDTVgVEFDNRCGVHVDDHFQTCVPNIYSCGDCAS-PFK 420
                 678***************************99966443346789999999999988888887777776541111112322223441114567888999**************8651144447999*************************74.555 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.14        16     130     167 ..      90     127 ..      75     167 .. 0.59
   2 !   14.9   0.0   1.7e-05    0.0019     135     165 ..     265     295 ..     259     300 .. 0.91
   3 !    8.0   0.0     0.002      0.23     369     424 ..     358     415 ..     347     429 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.14
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfealhk 167
                 p  +  + viGaG aGl         G +  + e    
  MMETSP1174-20130828|3696_1  90 PKERYDLVVIGAGVAGLLSVICAKALGKKAALIERHYM 127
                 44555567777777776544333334555555555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.7e-05
   TIGR01316 135 kvaviGaGpaGlavaselakkGhevtvfeal 165
                 ++ +iGaGp G+  a+ +a+ G +vt+fe  
  MMETSP1174-20130828|3696_1 265 RMCLIGAGPIGIELAQTMARFGSQVTIFEIC 295
                 6789************************975 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.002
   TIGR01316 369 deevkleadavivaiGqeank..iiaedsslktskrGtivvdedletsieGvfaGGdv 424
                 +++ + e++a++ a G+ +n   i  ++ +++  +r  + vd++++t ++ +++ Gd 
  MMETSP1174-20130828|3696_1 358 GTDKVYECEAILNATGRVPNVcgIGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDC 415
                 4556789************9733667777***************************97 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00029     0.034     375     419 ..      89     133 ..      73     172 .. 0.80
   2 !   11.4   0.0   0.00014     0.016     381     409 ..     265     293 ..     251     299 .. 0.90
   3 ?    0.7   0.0      0.24        27     608     634 ..     398     424 ..     353     434 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00029
   TIGR03997 375 karrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvk 419
                  +++r  ++v+G+G aGl + + a + G +  l+er+ + G  ++
  MMETSP1174-20130828|3696_1  89 VPKERYDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLN 133
                 46667789****************************876554443 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00014
   TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtlle 409
                 +++++G+GP G+e a+t ar G +vt++e
  MMETSP1174-20130828|3696_1 265 RMCLIGAGPIGIELAQTMARFGSQVTIFE 293
                 7899***********************99 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.24
   TIGR03997 608 lylslkdkvlevyriGDclaPRrveaa 634
                 +  +++  v+++y  GDc +P +  +a
  MMETSP1174-20130828|3696_1 398 VDDHFQTCVPNIYSCGDCASPFKFTHA 424
                 5556778899***********998777 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.64        73     144     185 ..      94     135 ..      70     208 .. 0.77
   2 !    9.7   0.0   0.00065     0.074     146     173 ..     266     293 ..     263     298 .. 0.93
   3 !   12.4   0.0    0.0001     0.012     394     454 ..     356     416 ..     342     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.64
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllryG 185
                   + v+G+G aGl +    +  G++ ++ er+   G  l  G
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVG 135
                 456799999999988877777788888888887777666666 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00065
   TIGR01317 146 vavvGsGPaGlaaadqlnraGhtvtvfe 173
                 ++++G+GP G+  a+ ++r G +vt+fe
  MMETSP1174-20130828|3696_1 266 MCLIGAGPIGIELAQTMARFGSQVTIFE 293
                 578************************9 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.0001
   TIGR01317 394 vpgseevleadlvllalGfvgpeqa.llddlgvdkdergnikaeldesetsidGvfaaGdar 454
                  +g+++v+e + +l a G v       ld +gv++d+r  +   +d+ +t ++ ++++Gd+ 
  MMETSP1174-20130828|3696_1 356 ADGTDKVYECEAILNATGRVPNVCGiGLDTVGVEFDNRCGV-HVDDHFQTCVPNIYSCGDCA 416
                 479***************9976654389*************.5567778***********96 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.072       8.2     140     184 ..      92     136 ..      74     153 .. 0.81
   2 !   12.0   0.0   0.00011     0.013     137     175 ..     259     297 ..     251     299 .. 0.85
   3 ?    4.1   0.0     0.026         3     378     460 ..     356     435 ..     342     441 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.072
   TIGR01318 140 tgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGlltfGi 184
                 +   + viGaG aGl      +  G k+ + +r+   G  l+ G 
  MMETSP1174-20130828|3696_1  92 ERYDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVGC 136
                 555678********9877777777999999999999888888885 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00011
   TIGR01318 137 vkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrype 175
                 +++   r+ +iGaGp G+  a+ +ar G +v++f+  p+
  MMETSP1174-20130828|3696_1 259 LEELPPRMCLIGAGPIGIELAQTMARFGSQVTIFEICPQ 297
                 555667999*************************97776 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.026
   TIGR01318 378 vaGseavleadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaeg 460
                  +G+++v e ++++ a G  p+     l++ g++ d++  + ++     ++qt  p+i++ Gd+     +  +a  + r+a ++
  MMETSP1174-20130828|3696_1 356 ADGTDKVYECEAILNATGRVPNVCGiGLDTVGVEFDNRCGVHVD----DHFQTCVPNIYSCGDCASPFKFTHAADWQARTAIRN 435
                 57999999999999999999987752699999999999988888....68**************87776666666666666655 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05    0.0016       3      89 ..      92     173 ..      90     212 .. 0.84
   2 ?    4.8   0.0     0.016       1.8     148     282 ..     268     415 ..     253     420 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-05
   TIGR03143   3 elydlvviGgGpaglsaGiyagraklkvliiekdelGGqititsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldvdleg 89 
                 e ydlvviG+G agl + i a     k  +ie++ +GG      +v  +P+   i   + ++e+++ a +fgv   + ev  vd+  
  MMETSP1174-20130828|3696_1  92 ERYDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDC---LNVGCFPSKAIIRCARAVHEVKT-AAEFGVIIPEGEV-RVDFPA 173
                 67***************9999988899999********85...68999999999999999999986.5579998888887.466655 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.016
   TIGR03143 148 viGgGfaaaeeavfltkyakkvtvivrepdf......tcakaiaekvkanPkievkfnvelkevt...Gddv...lrea......kfvnnatGeeteykakkdegtfGvfvfvGyvPss...elfkgkvelderGyvvtnedletnveGvyaaGdl 282
                 +iG+G    e a  +++++++vt+    p++        a+++ e+      +++++ v +++++   Gd +    ++a       fv +a G  ++y++++      ++   G vP+     l    ve+d+r  v  +++++t v+ +y+ Gd 
  MMETSP1174-20130828|3696_1 268 LIGAGPIGIELAQTMARFGSQVTIFEICPQLlpredpDAAALLKEELE--SEMDIQYSVKINNIEyvgGDPTagaPTKApwgcykVFVTLADGTDKVYECEA------ILNATGRVPNVcgiGLDTVGVEFDNRCGVHVDDHFQTCVPNIYSCGDC 415
                 688888888888889999999998765555511110033344444443..4566777777666544424432111333322222256666777777776443......44445555553111445567999***********************95 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   0.00019     0.021       1      73 [.      94     165 ..      94     183 .. 0.74
   2 !    7.4   0.0    0.0059      0.68       5      31 ..     268     294 ..     266     331 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelpre.keCggalskraveelelpkelivnevrkariispng 73 
                 yD+vv+GaG aG      ++  G + +l+e++ + ++ +  g + sk+ + ++++  + +v+++ +  +i+p+g
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDcLNVGCFPSKAIIRCARA--VHEVKTAAEFGVIIPEG 165
                 9***********9888899999**********99998666665666666666666..33566666666666666 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0059
   TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlllek 31 
                  +GaGp G  +A ++a+ G +V ++e 
  MMETSP1174-20130828|3696_1 268 LIGAGPIGIELAQTMARFGSQVTIFEI 294
                 59**********************995 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   4.1e-05    0.0047       1      32 [.      94     125 ..      94     135 .. 0.94
   2 ?    5.2   0.0     0.017         2       3      30 ..     266     293 ..     264     298 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.1e-05
   TIGR03364   1 tdvvvvGaGivGlahAlaaarrGlkVtviers 32 
                 +d+vv+GaG+ Gl   + a++ G+k ++ier+
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERH 125
                 79*****************************8 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.017
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvie 30 
                 +  +GaG +G+  A + ar G +Vt++e
  MMETSP1174-20130828|3696_1 266 MCLIGAGPIGIELAQTMARFGSQVTIFE 293
                 5689**********************99 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2    0.0093       1.1       1      32 [.      95     126 ..      95     138 .. 0.93
   2 ?    4.9   0.1     0.018       2.1       3      29 ..     267     293 ..     265     295 .. 0.89
   3 !    6.8   0.0    0.0048      0.54     224     291 ..     351     418 ..     348     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0093
   TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiekga 32 
                 d+++iGaG  Gl + i ak  g ++ +ie++ 
  MMETSP1174-20130828|3696_1  95 DLVVIGAGVAGLLSVICAKALGKKAALIERHY 126
                 799**************************975 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.018
   TIGR04018   3 iiiGaGPiGlaaaieakkaglsyliie 29 
                 ++iGaGPiG+  a  + + g +++i+e
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 78***********99999999998887 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0048
   TIGR04018 224 vtletpegeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaag 291
                 v ++ ++g+ + +e++ +l  tG  p++    l+++gve++++    v+ ++++ t v+++y +G +a+ 
  MMETSP1174-20130828|3696_1 351 VFVTLADGTDKVYECEAILNATGRVPNVCGigLDTVGVEFDNR--CGVHVDDHFQTCVPNIYSCGDCASP 418
                 555666788888999************9751267777777766..68899999************98875 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.28        32     535     574 ..      91     129 ..      75     161 .. 0.79
   2 !   12.5   0.0   3.3e-05    0.0038     538     568 ..     264     294 ..     252     298 .. 0.89
   3 ?    0.9   0.0      0.11        12     767     816 ..     367     417 ..     356     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.28
   TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagG 574
                 +e+  + viGaG aGl +    +  G + +++e++  +gG
  MMETSP1174-20130828|3696_1  91 KERYDLVVIGAGVAGLLSVICAKALGKKAALIERHY-MGG 129
                 5667899*********98888888888888888754.444 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.3e-05
   TIGR03315 538 hkvaviGaGPaGlsagyflaraGlpvtvfek 568
                 +++ +iGaGP G+  +  +ar G +vt+fe+
  MMETSP1174-20130828|3696_1 264 PRMCLIGAGPIGIELAQTMARFGSQVTIFEI 294
                 68899************************96 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.11
   TIGR03315 767 aviaavGeqvdt..ellkklgieldekgkvvvneetketsvtnvfviGdakk 816
                 a++ a G+  +     l+ +g+e+d++  v+v+++  +t v+n++  Gd   
  MMETSP1174-20130828|3696_1 367 AILNATGRVPNVcgIGLDTVGVEFDNRCGVHVDDH-FQTCVPNIYSCGDCAS 417
                 55555555444311247889999999999999998.8999999999999864 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.6    0.0009       0.1       2      30 ..      97     125 ..      96     134 .. 0.91
   2 !    6.4   0.0    0.0064      0.73       3      31 ..     268     296 ..     266     300 .. 0.89
   3 ?   -1.9   0.0       2.1   2.4e+02     144     186 ..     359     402 ..     350     408 .. 0.76
   4 ?   -3.0   0.0       4.7   5.4e+02      85     132 ..     532     578 ..     527     584 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0009
   TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEkn 30 
                 ++iG+G aGl++ i a++ g+k +l+E++
  MMETSP1174-20130828|3696_1  97 VVIGAGVAGLLSVICAKALGKKAALIERH 125
                 8**************************86 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0064
   TIGR00275   3 iiGgGaaGlmaAitaaeegakVlllEknk 31 
                  iG+G+ G+  A t+a+ g +V+++E   
  MMETSP1174-20130828|3696_1 268 LIGAGPIGIELAQTMARFGSQVTIFEICP 296
                 6************************9655 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2.1
   TIGR00275 144 ekkeleakkvilatGgk.sypklGstgsgyelaeklGhtivelv 186
                 ++k +e+++++ atG    +  +G +  g+e+ ++ G+++ + +
  MMETSP1174-20130828|3696_1 359 TDKVYECEAILNATGRVpNVCGIGLDTVGVEFDNRCGVHVDDHF 402
                 57899**********83245667889999999999998887655 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 4.7
   TIGR00275  85 elgvelkveedgrvFPvsdsaksvldaLlkelkelgvevlteskvksi 132
                 ++g+ l +   g + P   sa+ + ++ ++  ++ g+   ++++v+++
  MMETSP1174-20130828|3696_1 532 QNGIGLSKL-AGTIHPYPTSAEAIRQCAAQFWQRGGMATPVNKRVTEM 578
                 555555544.47889999999999999999999999888888888876 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.6e-05    0.0019      23      69 ..      86     130 ..      76     179 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.6e-05
   TIGR01373  23 rspepkpeydviivGgGGhGlatayylakehGitnvavlekgwlGgG 69 
                 ++p pk++yd +++G+G  Gl +    ak  G  + a++e+ ++Gg 
  MMETSP1174-20130828|3696_1  86 QNPVPKERYDLVVIGAGVAGLLSV-ICAKALG-KKAALIERHYMGGD 130
                 689******************875.6799999.5789********96 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   4.9e-05    0.0056       2      42 ..      94     133 ..      93     143 .. 0.90
   2 ?    0.1   0.0      0.57        65       5      31 ..     267     293 ..     265     298 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.9e-05
   TIGR00031   2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd 42 
                 +d++++GaG++G +    ++ l+k+  ++e r+ +GG+c +
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIE-RHYMGGDCLN 133
                 9***********9999999**********9.5799***975 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.57
   TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvve 31 
                  ++GaG  Gi la+ +a+++ +v + e
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 579********************9988 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   5.5e-05    0.0063       1      30 [.      94     123 ..      94     131 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.5e-05
   TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiia 30 
                 +D ++iG+G+aGl + + ++  Gkk+a+i 
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIE 123
                 9***************************97 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.7    0.0054      0.61       2      31 ..      97     126 ..      96     132 .. 0.89
   2 !    5.8   0.0    0.0085      0.97       2      28 ..     267     293 ..     266     298 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0054
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrd 31 
                 vViGaG++GL + i  +a G +  ++e++ 
  MMETSP1174-20130828|3696_1  97 VVIGAGVAGLLSVICAKALGKKAALIERHY 126
                 8*************************9864 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0085
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvle 28 
                 + iGaG  G+ lA  +a+ G +vt++e
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 67************************9 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00032     0.036       3      40 ..      95     132 ..      93     142 .. 0.91
   2 ?   -0.7   0.0      0.82        93       4      32 ..     266     294 ..     264     298 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00032
   TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCa 40 
                 ++vviGaG+aGl +     + G +  l+e + + G C 
  MMETSP1174-20130828|3696_1  95 DLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCL 132
                 689***********9999999**************995 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.82
   TIGR02733   4 vvviGaGiaGltaaallakrGlevtllea 32 
                 + +iGaG  G+  a  +a+ G +vt++e 
  MMETSP1174-20130828|3696_1 266 MCLIGAGPIGIELAQTMARFGSQVTIFEI 294
                 568***********************996 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00011     0.012       1      39 [.      95     131 ..      95     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00011
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                 d+vv+G+G+AGl + + ak+ g +++ ++e+  ++GG  
  MMETSP1174-20130828|3696_1  95 DLVVIGAGVAGLLSVICAKALG-KKAALIERH-YMGGDC 131
                 78********************.999999985.677765 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0026       0.3     169     205 ..      94     130 ..      78     140 .. 0.87
   2 ?    1.4   0.0     0.093        11     172     198 ..     267     293 ..     242     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0026
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGG 205
                  D++v+GaG aGL +   A   G +  l++ +   G 
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGD 130
                 599**************************88765554 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.093
   TIGR01372 172 LvvGaGpaGLaaAraAaraGarvilvd 198
                  ++GaGp G+  A++ ar G +v++ +
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 579********************9875 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1      0.01       1.1      22      63 ..      94     135 ..      89     160 .. 0.74
   2 ?    3.0   0.0     0.093        11      25      51 ..     267     293 ..     256     295 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.01
   TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgG 63 
                  D +++GaG +GL +       g k +++er+   G     G
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERHYMGGDCLNVG 135
                 599**********8765544456899*****97544443333 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.093
   TIGR00292  25 iivGaGpsGLtaayylakeglkvvvle 51 
                  ++GaGp G+  a+ +a+ g +v ++e
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 578**********************98 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.013       1.5       3      28 ..      94     120 ..      92     129 .. 0.80
   2 ?    3.4   0.0     0.048       5.5     335     357 ..     395     417 ..     390     438 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.013
   TIGR00551   3 advvviGsGaagLsaalalaekyr.vv 28 
                  d+vviG+G+agL   ++++  ++  +
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKkAA 120
                 799***********9999987666444 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.048
   TIGR00551 335 GisvdaygrtevkGLYaiGevas 357
                 G+ vd++ +t v+ +Y  G+ as
  MMETSP1174-20130828|3696_1 395 GVHVDDHFQTCVPNIYSCGDCAS 417
                 9******************9986 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.6     0.024       2.7       2      34 ..      97     129 ..      96     135 .. 0.90
   2 ?    4.9   0.0     0.022       2.5       2      28 ..     267     293 ..     266     298 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.024
   TIGR02352   2 lviGgGviGlsvAveLakrghkvtllekdevgs 34 
                 +viG+Gv Gl   + ++  g+k +l+e++ +g+
  MMETSP1174-20130828|3696_1  97 VVIGAGVAGLLSVICAKALGKKAALIERHYMGG 129
                 8**************************998776 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.022
   TIGR02352   2 lviGgGviGlsvAveLakrghkvtlle 28 
                   iG+G iG  +A  +a+ g +vt++e
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFE 293
                 679**********************98 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00067     0.077       2      35 ..      93     126 ..      92     129 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00067
   TIGR01816   2 kfdvvvvGaGGaGlraalelakeglktavvtklf 35 
                 ++d vv+GaG aGl + + +   g k+a + + +
  MMETSP1174-20130828|3696_1  93 RYDLVVIGAGVAGLLSVICAKALGKKAALIERHY 126
                 8***************************998765 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.036       4.2       2      31 ..      96     125 ..      95     130 .. 0.87
   2 ?    3.8   0.0     0.046       5.2       3      30 ..     267     294 ..     265     317 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.036
   TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekd 31 
                  +vIGaG+Ag++ +   ++ G +  l+e++
  MMETSP1174-20130828|3696_1  96 LVVIGAGVAGLLSVICAKALGKKAALIERH 125
                 58********99999999999999999987 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.046
   TIGR03197   3 avIGaGiAgaalalsLarrGvqvtllek 30 
                   IGaG  g+ la+++ar G qvt++e 
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFEI 294
                 57***********************985 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.5     0.035         4       1      32 [.      94     125 ..      94     162 .. 0.77
   2 ?    2.8   0.0     0.053       6.1       4      29 ..     267     292 ..     265     308 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.035
   TIGR00136   1 fdviviGaGhaGieaalaaarlgaktllltln 32 
                 +d++viGaG aG+ + + a  lg k  l+  +
  MMETSP1174-20130828|3696_1  94 YDLVVIGAGVAGLLSVICAKALGKKAALIERH 125
                 689***********9999999****9999765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.053
   TIGR00136   4 iviGaGhaGieaalaaarlgaktlll 29 
                  +iGaG  Gie a  +ar+g +++++
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIF 292
                 68********************9986 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.1     0.045       5.1       2      37 ..      97     131 ..      96     137 .. 0.84
   2 ?    3.3   0.0     0.081       9.2       2      32 ..     267     297 ..     266     299 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.045
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRa 37 
                 vv+G+G+AGL   +   + G +  l+E r+++GG +
  MMETSP1174-20130828|3696_1  97 VVIGAGVAGLLSVICAKALGKKAALIE-RHYMGGDC 131
                 8*********98888888888999999.57888866 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.081
   TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrq 32 
                   +G+G  G+  A ++ar G +vt++E  +q
  MMETSP1174-20130828|3696_1 267 CLIGAGPIGIELAQTMARFGSQVTIFEICPQ 297
                 579************************8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        73  (0.0177962); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 1.07u 0.20s 00:00:01.27 Elapsed: 00:00:01.67
# Mc/sec: 467.10
//
Query:       MMETSP1174-20130828|3704_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    6.4  12.0        0.7    8.3   3.9    3.0  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.9   0.00017       0.7       4      22 ..      19      38 ..      19      54 .. 0.88
   2 ?    0.4   0.3     0.054   2.2e+02       6      16 ..     231     241 ..     230     247 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00017
   TIGR01409  4 RdFLkaaaaagaaaglgl.l 22
                R+FL+++aaa+a++++ + +
  MMETSP1174-20130828|3704_1 19 RKFLTRSAAAVAMVAALSgV 38
                9**************97643 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.054
   TIGR01409   6 FLkaaaaagaa 16 
                 FL++ aa+ +a
  MMETSP1174-20130828|3704_1 231 FLGGGAATLLA 241
                 66666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|3705_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 317.60
//
Query:       MMETSP1174-20130828|3707_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 228.31
//
Query:       MMETSP1174-20130828|3711_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 328.09
//
Query:       MMETSP1174-20130828|3711_2  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 547.27
//
Query:       MMETSP1174-20130828|3713_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 326.50
//
Query:       MMETSP1174-20130828|3712_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 512.12
//
Query:       MMETSP1174-20130828|3716_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 445.46
//
Query:       MMETSP1174-20130828|3718_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 246.95
//
Query:       MMETSP1174-20130828|3729_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|3731_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 251.10
//
Query:       MMETSP1174-20130828|3732_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|3738_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1174-20130828|3740_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 383.59
//
Query:       MMETSP1174-20130828|3743_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-23   79.2   0.0    7.9e-23   79.0   0.0    1.0  1  TIGR01351 adk: adenylate kinases
    1.8e-12   45.1   0.0    2.1e-12   44.9   0.0    1.0  1  TIGR01360 aden_kin_iso1: adenylate kinase
    7.5e-10   36.9   0.0    8.6e-10   36.7   0.0    1.0  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    2.2e-05   22.4   0.0    2.2e-05   22.4   0.0    1.1  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0011   16.5   0.0     0.0013   16.3   0.0    1.1  1  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
       0.04   11.2   0.0       0.17    9.1   0.0    1.8  2  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.2e-25   7.9e-23       2      69 ..       3      70 ..       2      77 .. 0.95

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.2e-25
   TIGR01351  2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvke 69
                 v+lGpP sGKGT+ak+ a  lg++h+stGdl+Rae+++++++g +a+++ e+G+l+pd+iv ++v++
  MMETSP1174-20130828|3743_1  3 AVFLGPPSSGKGTYAKHCARFLGVPHVSTGDLIRAEITAGSPMGLQAASFSEAGHLIPDSIVYDVVER 70
                79***************************************************************986 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   3.1e-15   2.1e-12       8      72 ..       5      69 ..       2      75 .. 0.95

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 3.1e-15
   TIGR01360  8 ivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllk 72
                 +G p sGkGt  +   +  G  h+s+Gdl+r+e+++gs+ g +  +  e G+l+p  +v d+++
  MMETSP1174-20130828|3743_1  5 FLGPPSSGKGTYAKHCARFLGVPHVSTGDLIRAEITAGSPMGLQAASFSEAGHLIPDSIVYDVVE 69
                4799*********************************************************9986 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.3e-12   8.6e-10       4      70 ..       5      70 ..       3      77 .. 0.93

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.3e-12
   TIGR01359  4 vlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellek 70
                 lG+P sGkGt  ++  + ++  h+s+Gdl+r+ei   gs +g   +s+ + G+++P ++  +++e+
  MMETSP1174-20130828|3743_1  5 FLGPPSSGKGTYAKHCARFLGVPHVSTGDLIRAEIT-AGSPMGLQAASFSEAGHLIPDSIVYDVVER 70
                59**********************************.9********************999988876 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.2e-08   2.2e-05       4      67 ..       4      69 ..       1      79 [] 0.76

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.2e-08
   TIGR02173  4 visGpPGsGkttvakilaeklslklisaGki.r.elaekkgldlaeskkaeeekeiDkkiDrkike 67
                v  GpP sGk t ak+ a+ l++ ++s+G++ r e+ +   + l+     e  + i  +i   ++e
  MMETSP1174-20130828|3743_1  4 VFLGPPSSGKGTYAKHCARFLGVPHVSTGDLiRaEITAGSPMGLQAASFSEAGHLIPDSIVYDVVE 69
                567**************************9535578888888888777777766666666555555 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.9e-06    0.0013       9      39 ..       7      37 ..       2      52 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.9e-06
   TIGR00017  9 GPsaaGKstvakalaeklgykyldsGalYRv 39
                GP ++GK+t ak+ a+ lg  ++++G l R+
  MMETSP1174-20130828|3743_1  7 GPPSSGKGTYAKHCARFLGVPHVSTGDLIRA 37
                9***************************997 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00025      0.17       4      23 ..       5      24 ..       3      40 .. 0.83
   2 ?    0.2   0.0      0.13        89     115     134 ..      54      73 ..      39      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00025
   TIGR03574  4 ltGlPgvGkstfskelakkl 23
                + G+P++Gk t++k+ a+ l
  MMETSP1174-20130828|3743_1  5 FLGPPSSGKGTYAKHCARFL 24
                579*************9977 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.13
   TIGR03574 115 erGekiPnevikkmyekfde 134
                 e G+ iP+ ++ ++ e++ e
  MMETSP1174-20130828|3743_1  54 EAGHLIPDSIVYDVVERWTE 73 
                 78999*******99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 254.32
//
Query:       MMETSP1174-20130828|3748_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   13.7   0.0     0.0042   13.6   0.0    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     1e-06    0.0042     260     307 ..       4      51 ..       2      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1e-06
   TIGR01137 260 rlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnylt 307
                 r+i+++ +++ G sG a+ ++ + a ++l+++  ivv+l+ds ++ ++
  MMETSP1174-20130828|3748_1   4 RVIEKDLFIILGWSGKALSVIRQLAIHQLDKQRGIVVVLADSPKAIIS 51 
                 57888889999*******************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 277.63
//
Query:       MMETSP1174-20130828|3749_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-47  156.2   7.9    1.1e-46  155.8   5.4    1.2  1  TIGR01080 rplX_A_E: ribosomal protein L24
    5.2e-07   27.9   4.1    2.9e-06   25.5   2.9    2.2  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   5.4   5.4e-50   1.1e-46       1     115 [.      24     137 ..      24     138 .. 0.99

  Alignments for each domain:
  == domain 1    score: 155.8 bits;  conditional E-value: 5.4e-50
   TIGR01080   1 skqprkqrkalfeaplhvrrkllsapLskeLrekygkralpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGtevavpihpsnvmiiklklddekrkkllerk 115
                 s+++ k rka+f ap+hv+rk++sa+LskeL+eky++r++p+rk+d+v ++rG+ k +eGkv++v++k+y+i++e++t+ek++ + v+++ihpsnv i+klkld++ rk +lerk
  MMETSP1174-20130828|3749_1  24 SSDRSKSRKAHFSAPSHVKRKIMSATLSKELQEKYNVRTMPIRKDDEVMVMRGNQKNREGKVIQVYRKKYVIHIERITREKANQAPVNIGIHPSNVQITKLKLDKD-RKVILERK 137
                 799*******************************************************************************************************.******98 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   2.9   1.4e-09   2.9e-06       2      48 ..      63     109 ..      62     145 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.4e-09
   TIGR01079   2 akikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkp 48 
                 + i+k+D+V+v++G++k ++Gkv++v++kk  + +e +   k ++ p
  MMETSP1174-20130828|3749_1  63 MPIRKDDEVMVMRGNQKNREGKVIQVYRKKYVIHIERITREKANQAP 109
                 569*************************9666666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 411.81
//
Query:       MMETSP1174-20130828|3750_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1422.25
//
Query:       MMETSP1174-20130828|3753_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.4   1.2    3.6e-05   21.1   0.0    2.6  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
    1.1e-05   23.8   0.1    2.8e-05   22.4   0.0    1.7  2  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.8e-08   3.6e-05       1      39 [.       5      43 ..       5      57 .. 0.95
   2 ?    2.6   0.1     0.011        22      25      45 ..      63      83 ..      62      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.8e-08
   TIGR01411  1 glsatelliilvvilLlFGakKLpelgrdlGkaikeFKk 39
                gl+++e+ +i+ v + + G+  L++ +r lG+ ++eF++
  MMETSP1174-20130828|3753_1  5 GLGVPEIAVIIAVTAFVVGPQALADQARKLGENVGEFQQ 43
                699**********************************98 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.011
   TIGR01411 25 elgrdlGkaikeFKkalkeee 45
                +l+r +G+++ + K++lk++ 
  MMETSP1174-20130828|3753_1 63 KLAREAGQGLMSAKDSLKDMA 83
                589**************9986 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.4e-08   2.8e-05       1      58 [.       4      61 ..       4      82 .. 0.81
   2 ?   -0.1   0.0      0.15   3.1e+02      47      54 ..      77      84 ..      60     128 .. 0.57

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.4e-08
   TIGR01410  1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvkneldeelkleel 58
                f++G  E+ vi+ V   v+GP+ L   +r+ g+ v++ +++ + +k+ ++      + 
  MMETSP1174-20130828|3753_1  4 FGLGVPEIAVIIAVTAFVVGPQALADQARKLGENVGEFQQIPEGFKEGFEDTSSSPDT 61
                789********************************************99987665444 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
   TIGR01410 47 neldeelk 54
                ++l+ + +
  MMETSP1174-20130828|3753_1 77 DSLKDMAG 84
                33333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 707.08
//
Query:       MMETSP1174-20130828|3756_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 1204.40
//
Query:       MMETSP1174-20130828|3757_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1174-20130828|3760_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 413.33
//
Query:       MMETSP1174-20130828|3761_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1301.69
//
Query:       MMETSP1174-20130828|3775_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1545.24
//
Query:       MMETSP1174-20130828|3777_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|3778_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1125.38
//
Query:       MMETSP1174-20130828|3779_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1174-20130828|3781_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 153.28
//
Query:       MMETSP1174-20130828|3783_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   18.3   0.4    0.00022   17.8   0.3    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00088   15.1   1.2     0.0015   14.3   0.8    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0021   15.2   3.8     0.0021   15.2   2.6    2.0  2  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.13    9.5   6.3      0.036   11.3   0.5    2.1  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   2.2e-07   0.00022     164     252 ..      30     134 ..      24     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.2e-07
   TIGR00990 164 snraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeil.................e 252
                  n + cy  l+++     +  + le + +  kal rr  a  ++g   +a  dl      d+   + ++  +  l+k   esk ke+                   
  MMETSP1174-20130828|3783_1  30 GNASQCYINLSEWGGAETNCSKILEKKGNDLKALYRRGLARFRMGMLEEAKADLMQARKLDGE-SKAVKTELANLIKALVESKKKEKAasgdlskkpterrsedeP 134
                 5899*************************************************9887777764.45567778999***********98777777777766654433 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.8   1.4e-06    0.0015     118     190 ..      53     125 ..      45     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-06
   TIGR02917 118 slddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadp 190
                 ++++ + +++l  rglA ++ g+leeA+++l qA + + +s  +k+ lA l  a  + ++ +++++  L+++p
  MMETSP1174-20130828|3783_1  53 LEKKGNDLKALYRRGLARFRMGMLEEAKADLMQARKLDGESKAVKTELANLIKALVESKKKEKAASGDLSKKP 125
                 4677888999999************************************997777666666666666666655 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3     0.082        84     111     189 ..      88     163 ..      59     174 .. 0.49
   2 !   15.2   2.6   2.1e-06    0.0021      29      68 ..     237     278 ..     232     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.082
   TIGR00599 111 dlaapessskkklieeeeakgvdeeseddlrsasssraaakkktadil.qlssdtskrndkdyrsekpdedlvq.CPiCsq 189
                 +l +++++ k +l      +   +  e +++ +  s  ++kk+t     ++ +++s++   ++  +k  ++l++ C  C+ 
  MMETSP1174-20130828|3783_1  88 KLDGESKAVKTELA-----NLIKALVESKKKEKAASGDLSKKPTERRSeDEPKKPSNNCSTTKTGKKNGNELAHfCAFCES 163
                 34444443333333.....33333333333333333333333333211022234444444455555656666655777765 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2.1e-06
   TIGR00599  29 ChvCkdffkaPvltsCsHtFCslCiRrc..LseepkCPlCra 68 
                 C +C      P   +C+H FCs C+ +     ++  CPlCr 
  MMETSP1174-20130828|3783_1 237 CMICLAPPVDPSKLPCGHEFCSSCVADLrtHGVQQACPLCRE 278
                 88888888888889**********976411346789****96 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4     0.055        56     164     232 ..      85     153 ..      65     163 .. 0.68
   2 ?   11.3   0.5   3.5e-05     0.036      26      53 ..     252     280 ..     247     292 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.055
   TIGR00570 164 llqkleeeekkkkkkdkqalldeLetsdldvaeliaehkeksvkle.keveklksekkatfstgikvgaq 232
                 + +kl+ e+k+ k  +  +l++ L +s++  +    +  +k ++ + +++ k++s++ +t +tg k g++
  MMETSP1174-20130828|3783_1  85 QARKLDGESKAVKT-ELANLIKALVESKKKEKAASGDLSKKPTERRsEDEPKKPSNNCSTTKTGKKNGNE 153
                 44555555555554.5578999999999888877777766655555045556666666699999777665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 3.5e-05
   TIGR00570  26 CghtlCesCvdllfvrGsg.sCpeCdtpL 53 
                 Cgh +C sCv  l  +G   +Cp C   L
  MMETSP1174-20130828|3783_1 252 CGHEFCSSCVADLRTHGVQqACPLCREAL 280
                 *****************7526****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 1131.34
//
Query:       MMETSP1174-20130828|3788_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       496  (0.120917); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 591.95
//
Query:       MMETSP1174-20130828|3787_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1150.60
//
Query:       MMETSP1174-20130828|3790_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|3792_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 862.05
//
Query:       MMETSP1174-20130828|3791_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 995.92
//
Query:       MMETSP1174-20130828|3794_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|3799_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|3801_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|3800_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 559.82
//
Query:       MMETSP1174-20130828|3804_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 210.55
//
Query:       MMETSP1174-20130828|3811_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 151.79
//
Query:       MMETSP1174-20130828|3812_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|3819_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.44
# Mc/sec: 251.98
//
Query:       MMETSP1174-20130828|3820_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   28.2   0.0    2.1e-06   24.8   0.0    2.1  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
       0.01   12.2   0.0      0.014   11.7   0.0    1.2  1  TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family
      0.029   10.4   0.0      0.058    9.4   0.0    1.5  1  TIGR00603 rad25: DNA repair helicase rad25


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.6e-09   2.1e-06      16     181 ..      86     267 ..      77     318 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.6e-09
   TIGR04095  16 aikaWfkn.ngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekF.glepilayesvsrWqkelsekleelss..........kakkllliittnatlkeekFqsqlr.llkkkllliaDeahnlGak...rlkealpdsi...klRLgLsatPeRyfDeeGteall 181
                 a+ a+f++ + r ++ +  G+Gkt+ aL ++++la k++  + +v++P  +L++q  +e  ++ +   +  +++ +   +  +++l++ +              +  ++ +t ++ + +k  + l+ l ++  l++ Deah+   k   r ++ l dsi   + RL ++atP+  f ++Gt +  
  MMETSP1174-20130828|3820_1  86 ALAAFFDEgQSRATVVLPGGAGKTVLALRVAEALAAKKELRICLVLTPALDLISQTHREWMHWrEPGALDGWGQLAVCSSVSDSSLSRTTNpeeikhfldaPGDEPRVLFSTYHS-A-DKVAQALQdLGRTVDLMVLDEAHTTTGKatkRDAKPLFDSIfpaRRRLFMTATPRV-FRDKGTRDAD 267
                 5566665426799999***************************************998876552223333333333333333333333322000000000022333333333332.2.334445551445667********875440003344566775433789*******54.4556766544 PP

>> TIGR00348  hsdR: type I site-specific deoxyribonuclease, HsdR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     1e-05     0.014     277     453 ..     105     300 ..      81     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   TIGR00348 277 GsGKtltmlflAkkllkqeelknpkvlfvvDRreLdeQlmkefsslk..................kdeaeriesiaeLkelLeknd..kgiiitliqKfddklkeeeekfpidrkevvvliDEaHRsqyGk.....lakalkkalknasfigFtGTPiskkdkdtsevfgykeekylhqYkiedairdgltvkieYearlke 453
                 G+GKt+  l +A+ l    +++  + l+++   +L  Q+  e+ + +                   +++ r ++ +e+k+ L+       +++++ +  d k +++ ++ +  r   +++ DEaH +  Gk     ++    ++++    +  t+TP   +dk t ++ +  +e  l +   +++     ++++ ++++ + 
  MMETSP1174-20130828|3820_1 105 GAGKTVLALRVAEALA--AKKELRICLVLTPALDLISQTHREWMHWRepgaldgwgqlavcssvsDSSLSRTTNPEEIKHFLDAPGdePRVLFSTYHSAD-KVAQALQDLG--RTVDLMVLDEAHTTT-GKatkrdAKPLFDSIFPARRRLFMTATPRVFRDKGTRDADEGGGEPVLMCSMNDESLYGPTVFRLSFQEAVAR 300
                 8999999999999999..5556667788899999999999999988888889999999999888889999************97544599*******999.9999999999..66678999****765.663444444456788899999999************9888878899998888888888888999988887665 PP

>> TIGR00603  rad25: DNA repair helicase rad25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   4.2e-05     0.058     265     323 ..      86     148 ..      80     255 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.2e-05
   TIGR00603 265 slrkmfGnGrarsGiivlpcGaGkslvG..vtaactvkks...vlvlctsavsveqwkqqfklw 323
                 +l   f +G++r+  +vlp GaGk++    v+ a + kk+   +lvl+ +   ++q +  +  w
  MMETSP1174-20130828|3820_1  86 ALAAFFDEGQSRAT-VVLPGGAGKTVLAlrVAEALAAKKElriCLVLTPALDLISQTHREWMHW 148
                 6888999*****87.58********987224445556664333667666555556655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.57
# Mc/sec: 839.72
//
Query:       MMETSP1174-20130828|3824_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|3825_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067    9.3   4.6      0.073    9.2   3.2    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.2   1.8e-05     0.073     464     518 ..       6      61 ..       2      73 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.8e-05
   TIGR03346 464 iekvkkikee.lekvklelekakregdlakaaelkygklpelekeleeaeekekee 518
                 + + ++ik+e  ekv+le e+a+ +  +a aae+ +gk ++ ek   +aee+e  +
  MMETSP1174-20130828|3825_1   6 MAQETHIKAEaAEKVRLEAEEAEMDRAVAEAAEMAHGKYEAAEKARLDAEEAELAR 61 
                 5555666654279*****************************99766666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|3822_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-35  118.7   0.0    1.1e-34  118.2   0.0    1.2  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    4.7e-05   20.9   0.0    7.9e-05   20.2   0.0    1.3  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   5.2e-38   1.1e-34      35     197 ..     245     410 ..     228     411 .] 0.89

  Alignments for each domain:
  == domain 1    score: 118.2 bits;  conditional E-value: 5.2e-38
   TIGR03718  35 eallwslvwvalallFavlvylllgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlle..eeeeedleenllvrllkkvlpvtdklegekffvr.ekgkrlatplllvlv 197
                 ++l +  + va +l+F + ++l+ ga+ a +f+t+y +E sLsvDNlfvfll+f +f+vp +l    L +Gi g+++lR++fi  G a  ++f+ + ++f+ fl+++++++l e   ee+ed e  +++  l   lp+t ++egekff   e+g+++at l  +lv
  MMETSP1174-20130828|3822_1 245 DSLKTFGLLVAATLVFDGGIFLTRGATDAFDFFTAYAVEDSLSVDNLFVFLLLFRYFKVPPQLVDTCLNYGISGSIILRGMFIYFGLAAANSFAPLNLVFSGFLLFSSYQLLAEgeVEEDEDEEPPAIILSLLDKLPLTGTFEGEKFFSSgEDGSLMATQLTATLV 410
                 666777788999******************************************************************************************************5433455555555666677789***********9873689999**9999887 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.9e-08   7.9e-05       7      91 ..     281     368 ..     276     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.9e-08
   TIGR03716   7 vlEglLsaDnAvvlAvlvk..hLPekqrkkaLfYgliGAyvfRfialllasflik.lweikalgalYLlylalkhllkkkkekeeeek 91 
                 ++E  Ls+Dn  v+ +l +  ++P +     L Yg+ G  ++R ++++++    + ++ ++++ + +Ll+ +++ l++ + e++e+e+
  MMETSP1174-20130828|3822_1 281 AVEDSLSVDNLFVFLLLFRyfKVPPQLVDTCLNYGISGSIILRGMFIYFGLAAANsFAPLNLVFSGFLLFSSYQLLAEGEVEEDEDEE 368
                 68999********9999985568**************************9877653899*****************999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:01.46
# Mc/sec: 371.56
//
Query:       MMETSP1174-20130828|3830_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   15.2   0.4       0.29    9.2   0.0    2.2  2  TIGR01636 phage_rinA: phage transcriptional regulator, RinA family
  ------ inclusion threshold ------
      0.018   11.6   0.1      0.025   11.1   0.0    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c


Domain annotation for each model (and alignments):
>> TIGR01636  phage_rinA: phage transcriptional regulator, RinA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0048       9.8      56     101 ..      15      61 ..       8      70 .. 0.80
   2 !    9.2   0.0   0.00014      0.29      18      50 ..     126     158 ..     117     182 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0048
   TIGR01636  56 avillamdkrlsklkeikdaiesvlneadekereliq.elYfdkkks 101
                  v  +am+++l k+  ik+  +s+   ++  +r+l q e+ f+ kk 
  MMETSP1174-20130828|3830_1  15 DVEGFAMQQELKKIDVIKKCAQSCALTLKSLNRQLTQlEKDFNEKKD 61 
                 566789******************99999999999884556666655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00014
   TIGR01636  18 ktkkeleekeeevrlpyeeiDenaGgesagsis 50 
                 + k+el++++ee+ +  e++D  +Gg + g i 
  MMETSP1174-20130828|3830_1 126 RIKRELRQLHEELWHQQEYVDSIQGGLGGGDII 158
                 5789*********************99888764 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.2e-05     0.025     310     386 ..      15      91 ..      12     106 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.2e-05
   TIGR01813 310 evekalkdgvlikvdsleelakqlnipaeklkktvkeynevvakgkdeafgrkadekkdlslkspyyvikvtPkvHy 386
                  ve + +++ l+k d +++ a+++ ++ ++l++++ +  +  +++kd+++  +++ ++  s ++p  +   +   H+
  MMETSP1174-20130828|3830_1  15 DVEGFAMQQELKKIDVIKKCAQSCALTLKSLNRQLTQLEKDFNEKKDAQITMPNKPANPDSSEPPAHAAAASSYYHF 91 
                 57889999******************************************999866655555777777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 617.05
//
Query:       MMETSP1174-20130828|3832_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 403.97
//
Query:       MMETSP1174-20130828|3833_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   21.2   0.0    4.1e-05   20.9   0.0    1.1  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.021   11.8   0.0      0.024   11.6   0.0    1.1  1  TIGR03806 chp_HNE_0200: conserved hypothetical protein, HNE_0200 family
      0.022   12.3   0.0      0.025   12.1   0.0    1.3  1  TIGR03045 PS_II_C550: cytochrome c-550


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     3e-08   4.1e-05     205     264 ..      87     147 ..      70     166 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3e-08
   TIGR00782 205 kGkelFadnCvsChgedgkGlqelgapnltdd..vwlyGgdkktivttikkGrigvmPawkk 264
                    +lF++nC+sCh   g+ +     + l  d  +    +d+++i + i++G+ gvmP +++
  MMETSP1174-20130828|3833_1  87 SPDQLFDANCASCHRGGGNAIGYARGKTLRKDalIKNNVADEESISNLIQNGK-GVMPRYSE 147
                 5579**********998888887777899877224456689***********7.8***9983 PP

>> TIGR03806  chp_HNE_0200: conserved hypothetical protein, HNE_0200 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.8e-05     0.024     215     232 ..      90     107 ..      64     139 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.8e-05
   TIGR03806 215 ayLdvnCahCHrpeGlas 232
                 +  d+nCa CHr +G+a 
  MMETSP1174-20130828|3833_1  90 QLFDANCASCHRGGGNAI 107
                 5679***********974 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05     0.025      53      70 ..      87     104 ..      44     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   TIGR03045  53 kgkrlfnsaCatChvgGi 70 
                 +  +lf+++Ca+Ch gG 
  MMETSP1174-20130828|3833_1  87 SPDQLFDANCASCHRGGG 104
                 5679***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 667.94
//
Query:       MMETSP1174-20130828|3834_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|3836_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.65
# Mc/sec: 333.02
//
Query:       MMETSP1174-20130828|3838_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1174-20130828|3841_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|3839_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 814.69
//
Query:       MMETSP1174-20130828|3843_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 878.24
//
Query:       MMETSP1174-20130828|3844_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-14   50.8  13.8    0.00025   18.1   0.2    4.1  4  TIGR00435 cysS: cysteine--tRNA ligase
    6.4e-11   39.9   0.0    6.7e-11   39.9   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      3e-08   30.9   0.0      3e-08   30.9   0.0    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.9e-07   27.0   0.0      1e-06   26.4   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.4e-05   19.1   0.0    8.4e-05   19.1   0.0    2.2  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00089   17.2   0.1        0.9    7.7   0.0    3.8  4  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0028   14.3   0.0     0.0041   13.7   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0062   14.0   0.0     0.0094   13.4   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
      0.021   11.4   0.0      0.032   10.8   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      0.022   11.6   0.0      0.031   11.1   0.0    1.2  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.7e-05    0.0071     417     457 ..     102     143 ..      84     150 .. 0.80
   2 !   13.0   0.4     2e-05    0.0084     408     459 ..     180     231 ..     168     237 .. 0.86
   3 !   18.1   0.2     6e-07   0.00025     416     458 ..     368     410 ..     347     415 .. 0.85
   4 !   13.7   0.1   1.3e-05    0.0053     416     459 ..     457     500 ..     440     506 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR00435 417 elgeledlieersearkkkelkkaDkiRdellkkg.ivLeDt 457
                 e++e+++l++er +a+ +++++ aD+iRd+ll++g + ++D+
  MMETSP1174-20130828|3844_1 102 EENEVHALLAERLNAKLDRNYEVADRIRDDLLERGgVFVNDR 143
                 567999**********************99988752666666 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2e-05
   TIGR00435 408 svqagsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                 ++ +  + d ++ +++l+++r +a+ +++++ aDk+ ++l ++g+ ++D+++
  MMETSP1174-20130828|3844_1 180 DTDSVLDADAVARIDSLLAQRLQAKLSRNFQTADKLLETLREEGVSVDDRRK 231
                 4555566778999************************************965 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 6e-07
   TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDtp 458
                 +++ +++ l++er+ +r+++++++aDkiRd l ++gi L+D++
  MMETSP1174-20130828|3844_1 368 EDDIDVDGLLAEREMLRQAQDYAQADKIRDLLSDQGIKLNDRQ 410
                 3467889999*******************************96 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 1.3e-05
   TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                  ++  +++ + er + rk+k ++ aD+i ++l++++iv++D ++
  MMETSP1174-20130828|3844_1 457 ADVLTIQQCLLERDDYRKTKSFDDADRILEQLKDMNIVIDDGRK 500
                 346678999999***************************99854 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.6e-13   6.7e-11     270     385 ..     228     352 ..      94     494 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.6e-13
   TIGR01628 270 akfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf.........mqasaesrql 385
                  ++++ +  +    ++  ++v Nl + ++ ++L+++F+  G++  a+v  d  +++ k FG V f ++++A +A++ +  + l+g  L v l ++   R+++++ +          +  s +s q+
  MMETSP1174-20130828|3844_1 228 DRRKQWRAAQAFDFKVCRVFVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDrVTGETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTLGVRLDRQDASRRSQMRPEThpgrgdrqtT-YSSNSTQM 352
                 456677777778889999*********************************779*****************************************99*****998884555443220.22222222 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.8       1.2   4.9e+02      31      84 ..     129     181 ..     111     215 .. 0.48
   2 !   30.9   0.0   7.4e-11     3e-08     219     326 ..     243     348 ..     227     407 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.2
   TIGR01622  31 RdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrr 84 
                 Rd   +R      +r r+++   +  +k+r+ +r +r+ + s+++  r ++r+ 
  MMETSP1174-20130828|3844_1 129 RDDLLERGGVFVNDRSREWRV-ASSSSKPRGDRRAKRQFGASGHDYTRIEDRDT 181
                 222222222223344444443.34444444444444444444333333333332 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 7.4e-11
   TIGR01622 219 dlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgla.sDvteesdaslaskfedsfdeseqsgldln 326
                   +++v nl  ++t q+L++ F+  G +    +  D  tG +k +G +qF+  + a +A+e +    l G ++ v l  +D   +s+    ++ +    ++ q++   n
  MMETSP1174-20130828|3844_1 243 VCRVFVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDRVTGETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTLGVRLDrQDASRRSQM--RPETHP-GRGDRQTTYSSN 348
                 5799***********************************************************99*******9999821222222222..222222.133333333333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.5e-09     1e-06      88     172 ..     242     324 ..     234     400 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.5e-09
   TIGR01661  88 kganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPs 172
                 k + ++vs lP  mt ++l   f+  G +  + +  d+vt+ +k  G+++f+  ++a +ai  + G  P    + + v++  + +
  MMETSP1174-20130828|3844_1 242 KVCRVFVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDRVTGETKDFGLVQFETPDDAAHAIE-IMGDHPLHG-NTLGVRLDRQDA 324
                 667799******************************************************96.557777543.456666666666 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9   4.6        10   4.1e+03       6      70 ..     126     189 ..     121     244 .. 0.40
   2 !   19.1   0.0     2e-07   8.4e-05     298     376 ..     245     323 ..     180     353 .. 0.89
   3 ?   -3.0   0.1      0.99   4.1e+02      90     110 ..     429     448 ..     421     473 .. 0.50

  Alignments for each domain:
  == domain 1    score: -6.9 bits;  conditional E-value: 10
   TIGR01642   6 drerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsiss.leeds 70 
                 dr r++  er +   ++RsR+ +   s ++ R  r  +r         d  r ++r+++s l+ d 
  MMETSP1174-20130828|3844_1 126 DRIRDDLLERGGVFVNDRSREWRVASSSSKPRGDRRAKRQFGAS--GHDYTRIEDRDTDSvLDADA 189
                 55555555555555566666655555555544333122222222..22222222222222133333 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2e-07
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvg 376
                 +++++nLP d++ + +k+  +  G +    +  d+ tG  K ++ ++++ + ++  Ai+ +    l +++L v+   ++
  MMETSP1174-20130828|3844_1 245 RVFVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDRVTGETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTLGVRLDRQD 323
                 9*************************999999*****************************999999**9999876555 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.99
   TIGR01642  90 kerrrsrkrsssnekkkddkk 110
                 +++ r+r +  s+ ++    +
  MMETSP1174-20130828|3844_1 429 QNKSRQRGSEDSRTWR-ALDR 448
                 2333333333344444.3333 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   7.6e+02      14      30 ..     120     136 ..     119     141 .. 0.86
   2 ?    3.5   0.0     0.048        20      14      34 ..     207     227 ..     205     228 .. 0.92
   3 ?    0.7   0.0      0.38   1.6e+02      12      34 ..     385     407 ..     382     408 .. 0.88
   4 !    7.7   0.0    0.0022       0.9      10      34 ..     472     496 ..     472     497 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.9
   TIGR00756  14 grveeAlelfdeMkerg 30 
                 +++e A ++ d+++erg
  MMETSP1174-20130828|3844_1 120 RNYEVADRIRDDLLERG 136
                 78999*******99997 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.048
   TIGR00756  14 grveeAlelfdeMkergivPd 34 
                 +++  A +l++ ++e+g++ d
  MMETSP1174-20130828|3844_1 207 RNFQTADKLLETLREEGVSVD 227
                 799***************998 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.38
   TIGR00756  12 kagrveeAlelfdeMkergivPd 34 
                 +a ++  A ++ d++ ++gi+ +
  MMETSP1174-20130828|3844_1 385 QAQDYAQADKIRDLLSDQGIKLN 407
                 6789999*************998 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.0022
   TIGR00756  10 lckagrveeAlelfdeMkergivPd 34 
                 + k +++++A ++++++k+++iv d
  MMETSP1174-20130828|3844_1 472 YRKTKSFDDADRILEQLKDMNIVID 496
                 56899*****************998 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     1e-05    0.0041     107     272 ..     244     315 ..     217     331 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1e-05
   TIGR01645 107 srvvGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvgrPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqll 272
                 +                                                                                               r+ v+ + pd++ +dlk  f   G +    ++ +  +++ k fG+++fe      +ai  m    l G  l
  MMETSP1174-20130828|3844_1 244 C-----------------------------------------------------------------------------------------------RVfVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDRVTGETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTL 315
                 3...............................................................................................55577777777777777777777777777777777777777777777777777777776666555555544 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.3e-05    0.0094     110     169 ..     246     305 ..     222     330 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
   TIGR01659 110 livnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraiksl 169
                 + v  lp dmt ++l   f+  g +    +  d  tg +  +++v+f +  d+  ai+ +
  MMETSP1174-20130828|3844_1 246 VFVSNLPPDMTWQDLKDHFKIAGTVAYASVSEDRVTGETKDFGLVQFETPDDAAHAIEIM 305
                 456777777777777777777777777777777777777777777777777777777654 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.8e-05     0.032     264     334 ..     279     349 ..     237     366 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.8e-05
   TIGR01648 264 rvk.kirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqaaaqsls 334
                 rv    +d+ +v fe  +da +a++ +  + l+G+++ v l +  d  + ++ +  ++ +++ +q+++ s s
  MMETSP1174-20130828|3844_1 279 RVTgETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTLGVRLDR-QDASRRSQMRPETHPGRGDRQTTYSSNS 349
                 5542579**********************************87.4666678888888888888888887443 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.5e-05     0.031     301     379 ..     246     328 ..     207     352 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.5e-05
   TIGR01649 301 llvsnLeeekvtpd..alFnlfg..vYGdvervkilknkketalvemadpqqaqlalthLdkvklfgkklrvavSkqeavqlp 379
                 ++vsnL + +   d    F++ g   Y  v   ++  + k+ +lv++ +p++a +a++ + ++ l+g++l v + +q+a   +
  MMETSP1174-20130828|3844_1 246 VFVSNLPPDMTWQDlkDHFKIAGtvAYASVSEDRVTGETKDFGLVQFETPDDAAHAIEIMGDHPLHGNTLGVRLDRQDASRRS 328
                 55566655443333112355554223666666666677778888888888888888888888888888888877777765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:05.23
# Mc/sec: 130.47
//
Query:       MMETSP1174-20130828|3850_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1174-20130828|3849_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|3852_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 224.74
//
Query:       MMETSP1174-20130828|3854_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 326.31
//
Query:       MMETSP1174-20130828|3856_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|3855_1  [L=1080]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:00.76
# Mc/sec: 1875.63
//
Query:       MMETSP1174-20130828|3858_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1174-20130828|3860_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|3862_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-59  200.4   0.0      1e-58  197.1   0.0    2.0  1  TIGR00218 manA: mannose-6-phosphate isomerase, class I
  ------ inclusion threshold ------
       0.02   12.3   0.0      0.031   11.8   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00218  manA: mannose-6-phosphate isomerase, class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   4.9e-62     1e-58      11     326 ..      17     370 ..       8     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 4.9e-62
   TIGR00218  11 lkerdWGk...gtaladllgys......ipskqtaElWagaHkkgsSkvqngkkvsLrdliekhksellGkaeadrfelPlLvkvLsaekplsiqvHPdkalakigyakekrnYkDknhkpelvialtdfealkgfkpLkriaelh.......................eeaer..lgkteawviiasdekikeaaeilkealkns...............keelkekiqrl..iypedvglfkgllLnrvklkpgeaiyvrsgtvHAykggdvlEvmanSdnvvragltdkyldvkklvevltveekpeeklkeqkqkegaevlflvpieefavlktdlseka..elk.sqdsalillvleGdglilsg 326
                 +ke++WG     + +a ++  +      +p+ ++aElW g+H++g S  +   + sL+d         lG        lP+++k+Lsa k lsiq+HPdk+ a  +++k++ nYkD n kpe++ialt+fea++gf+ +++ia                          ee  +  l+  +++++   +++  +  e l  +l ++               ++     i rl  ++p d g   +l Ln + + pge +++ ++++HAy  g+++E+ma Sdnvvraglt ky+dv+ lv++lt+     + +   +   + ++ +++p+ ef+v+ ++++  +  ++   ++ ++i ++leG g+  s+
  MMETSP1174-20130828|3862_1  17 VKEYAWGIrgpDSRVARFAVEAgaieeiDPGTPYAELWIGTHSSGRSMLKD--GRSLEDA--------LGGP------LPFIFKILSAGKALSIQAHPDKNFASRLHEKNPENYKDSNYKPEMAIALTPFEAMCGFRRIEEIAVFLrkhrefadcvsteaklaifmaqdEESKQlaLKDLFSSFMHCDNKRSVKRLEQLLIRLRQEqsgasaaavhaeppwERKAARAILRLaqQFPGDPGAMAPLFLNYLLIAPGESFFMAANEPHAYVAGEIIECMACSDNVVRAGLTLKYKDVESLVSMLTYSMGGPSIDAGLQYLGDNTLRYTPPVPEFEVIMVTVEPGEteQVPlPDHIPAIFIALEGTGFAFSN 370
                 679999977775666665432211122378889***************998..7888764........5655......6***********************************************************999998888999999*************976555557899999888876666555555555544444448999****9999887778888877789**************************************************************************99999999999999******************854422444135678999999999987766 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05     0.031      71     147 ..     156     234 ..     153     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.5e-05
   TIGR00095  71 LsRgakkvvfveqdkkvaktlkeNl.stlklskeqatvlndaeralavlakket.vfdiiylDPPfevklleailelll 147
                  s +ak ++f+ qd+++++  ++ l s +    ++ +v++ +++ +    ++ +     + + PP+e+k + ail l +
  MMETSP1174-20130828|3862_1 156 VSTEAKLAIFMAQDEESKQLALKDLfSSFMHCDNKRSVKRLEQLLIRLRQEQSGaSAAAVHAEPPWERKAARAILRLAQ 234
                 5889**************9866665465655555788888887766655554444899****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1461.78
//
Query:       MMETSP1174-20130828|3864_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 570.76
//
Query:       MMETSP1174-20130828|3865_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1174-20130828|3868_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.7   0.6       0.57    8.6   0.1    2.6  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.02        82      51      88 ..      52      89 ..      44     102 .. 0.69
   2 ?    8.6   0.1   0.00014      0.57      10      68 ..     138     196 ..     129     218 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.02
   TIGR02795 51 akkkykdAakaflevvkkypksekapdallklgeslqe 88
                +k+ ++++++a ++++++ + +++   + +klg+ lq+
  MMETSP1174-20130828|3868_1 52 QKSSFDASKAAIAKLTEHVERHPQDVSSYIKLGVELQK 89
                56666666666777777777777777777777776666 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00014
   TIGR02795  10 llvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkk 68 
                  l++  g+ a+A ++F++ l +  + +l ++   ++Ge+++ ++k++ A + ++++v+ 
  MMETSP1174-20130828|3868_1 138 VLHYSMGNTADALTSFDKLLATAESPKLRGEGLQYRGEVYTHAGKFALAMADYRAAVAV 196
                 45556666777888888888888888888888888888888888888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1174-20130828|3871_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|3877_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 2190.39
//
Query:       MMETSP1174-20130828|3882_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|3883_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 321.05
//
Query:       MMETSP1174-20130828|3887_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 482.80
//
Query:       MMETSP1174-20130828|3893_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 756.52
//
Query:       MMETSP1174-20130828|3898_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 511.96
//
Query:       MMETSP1174-20130828|3899_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   12.5   0.0     0.0098   12.5   0.0    1.0  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.4e-06    0.0098     265     308 ..      46      91 ..      33      96 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.4e-06
   TIGR01885 265 savladkevmltikpgehGstygGnPlasavavaal..evlkeekl 308
                   v  d+++ l +  g+hG  y G Pl+++v  aa+  + l +e++
  MMETSP1174-20130828|3899_1  46 GEVSEDDDLSLHLACGSHGLRYRGVPLTTSVLTAAIikRGLVDENV 91 
                 45778999***********************999973334555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|3901_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 871.13
//
Query:       MMETSP1174-20130828|3900_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 167.52
//
Query:       MMETSP1174-20130828|3903_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|3904_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-54  179.1   0.0    1.1e-53  178.8   0.0    1.0  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.0   2.6e-57   1.1e-53       3     139 ..      19     157 ..      17     158 .. 0.98

  Alignments for each domain:
  == domain 1    score: 178.8 bits;  conditional E-value: 2.6e-57
   TIGR01632   3 ikaiiklqveagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaagvekgskkpkkekvgkitlkqvreiAklKlsD..lnaleleaavkiiaGtAksmGieve 139
                 ++++++l v+ag+AkP+p +G+alg  g+n+meFck+fN++t+++ +g+++pv +t++++++f+f++k+pp++++lkkaagvekg+++p++e+vg++tlkqv+eiAklK +D  l++l l++++++i+G+A+smGiev 
  MMETSP1174-20130828|3904_1  19 VARVVRLRVPAGSAKPGPAIGQALGPLGINMMEFCKAFNNATDSMLPGTPIPVQLTAFTNRTFEFTTKSPPTTWFLKKAAGVEKGTTRPGHETVGSVTLKQVYEIAKLKHQDehLKHLPLQGICRSIVGSAQSMGIEVI 157
                 7899************************************************************************************************************9999999******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.72
# Mc/sec: 320.81
//
Query:       MMETSP1174-20130828|3909_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1174-20130828|3908_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1174-20130828|3915_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.6   0.0        2.1    5.2   0.0    2.0  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      0.034   12.0   0.0        3.4    5.5   0.0    2.1  2  TIGR00809 secB: protein-export chaperone SecB


Domain annotation for each model (and alignments):
>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0015         3     272     298 ..       9      35 ..       3      38 .. 0.90
   2 ?    5.2   0.0     0.001       2.1     271     298 ..      60      87 ..      52      90 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0015
   TIGR03539 272 keryaarrellkaalekaGfriehsea 298
                  +rya+ re + +   +aGf++e s+ 
  MMETSP1174-20130828|3915_1   9 DTRYASAREIISTFSSRAGFEVESSDE 35 
                 579*********************986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.001
   TIGR03539 271 qkeryaarrellkaalekaGfriehsea 298
                  ++rya+ re + +   +aGf++e s+ 
  MMETSP1174-20130828|3915_1  60 NNTRYASAREIISTFSSRAGFEVESSDE 87 
                 578**********************986 PP

>> TIGR00809  secB: protein-export chaperone SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.003       6.2     105     120 ..      14      29 ..       7      34 .. 0.89
   2 ?    5.5   0.0    0.0016       3.4     103     120 ..      64      81 ..      49      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.003
   TIGR00809 105 yareivsslvsragfp 120
                  arei+s+  sragf+
  MMETSP1174-20130828|3915_1  14 SAREIISTFSSRAGFE 29 
                 59*************7 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0016
   TIGR00809 103 fPyareivsslvsragfp 120
                 +  arei+s+  sragf+
  MMETSP1174-20130828|3915_1  64 YASAREIISTFSSRAGFE 81 
                 6679*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 343.87
//
Query:       MMETSP1174-20130828|3914_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 654.87
//
Query:       MMETSP1174-20130828|3918_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.2   0.7      0.014   12.0   0.5    1.0  1  TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit


Domain annotation for each model (and alignments):
>> TIGR03152  cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   3.3e-06     0.014     289     368 ..      14      99 ..       5     109 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.3e-06
   TIGR03152 289 klkdvvaerkaevkelklkledqi..v..kahfeakaawdagateeemkpilqdirhaqw.rwdyaiashgvhl.hapdvalrvlg 368
                  +k++v+++  +   ++  le+q   +  +  +e ++a  +   ++e++++l  i   qw +wd   as gv + h  +++lr + 
  MMETSP1174-20130828|3918_1  14 DIKKMVRNKELANVGVQYFLESQQfsIpsHCQYEPQSANLSTEIDHEIEEVLDIIEAEQWdQWDARHASIGVEIdHEIEEVLRAIE 99 
                 56777777766666677777776522322445899999999999****************77**********98677888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1174-20130828|3921_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 203.33
//
Query:       MMETSP1174-20130828|3924_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1174-20130828|3928_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 837.84
//
Query:       MMETSP1174-20130828|3935_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-15   52.8   0.5    2.9e-14   51.0   0.3    1.7  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.2e-11   41.1   0.2    1.9e-11   40.4   0.1    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0004   18.0   0.0     0.0056   14.2   0.0    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
      0.002   14.2   0.3     0.0028   13.7   0.2    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.035   12.6   0.0       0.36    9.3   0.1    2.2  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
      0.039   10.4   0.0      0.097    9.1   0.0    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.3   4.3e-17   2.9e-14      37     180 ..     563     704 ..     552     708 .. 0.94

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 4.3e-17
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelkl 180
                 L+ e   +gd+ +A +  e+A   dp  +dan +l+++ ++  +l+ A  +fr+A+  +  +++++ NY + L ++   e+A  +++aA++    ++ a++ e +g  +l++g+   a +++  al+++p++   l +l e++ 
  MMETSP1174-20130828|3935_1 563 LGHELEDRGDIPNAWRCFETATLRDPLASDANTMLGVMAMRANQLDLAGVKFRRAIDGNAPSATAHHNYAMLLLRNHSLEDAVSHLRAAVRL--APTLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNEALLDKLQEVHQ 704
                 666666799*********************************************************************************86..5899999*******************************999999998875 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   2.8e-14   1.9e-11     361     499 ..     555     693 ..     546     706 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.8e-14
   TIGR02917 361 ddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdff 499
                 ++  l   lG ++   gd+ +A + ++ a+ +dP   +a+t lg++ +  ++   a  +++ A++ +  +  a+   ++  Lr++ ++ a++ +++     p  a+ + llg +yl ++ +  A e+f +AL ++p++ 
  MMETSP1174-20130828|3935_1 555 RNGMLWYNLGHELEDRGDIPNAWRCFETATLRDPLASDANTMLGVMAMRANQLDLAGVKFRRAIDGNAPSATAHHNYAMLLLRNHSLEDAVSHLRAAVRLAPTLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNE 693
                 5555666678888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999875 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.2e-06    0.0056      22     121 ..     561     660 ..     551     668 .. 0.93
   2 !    4.7   0.0    0.0071       4.9      66     120 ..     639     693 ..     632     705 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.2e-06
   TIGR02552  22 YalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekee 121
                 Y+l+++l  +g+  +A + F+  ++ dp  ++    L++  +++++ + A   + +a   ++ ++ ++   a  ll  +  e+A + L++a+++a   ++
  MMETSP1174-20130828|3935_1 561 YNLGHELEDRGDIPNAWRCFETATLRDPLASDANTMLGVMAMRANQLDLAGVKFRRAIDGNAPSATAHHNYAMLLLRNHSLEDAVSHLRAAVRLAPTLAQ 660
                 899999999****************************************************999*****************************9985544 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0071
   TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 +  e+A+    +a+ l +  ++++  ++  +l+ g+k +A + +++a+++  ++e
  MMETSP1174-20130828|3935_1 639 HSLEDAVSHLRAAVRLAPTLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNE 693
                 5667777778888888888888888888888888888888888888888888776 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   4.1e-06    0.0028     101     197 ..     606     702 ..     570     730 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.1e-06
   TIGR03939 101 qwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelvei 197
                 q d A   +r+++  +  ++++   +a+ l+ +   e+A ++l++++   p+ a+  e l++++ +++++ da ++   alrl+P+n+ ll +l e+
  MMETSP1174-20130828|3935_1 606 QLDLAGVKFRRAIDGNAPSATAHHNYAMLLLRNHSLEDAVSHLRAAVRLAPTLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNEALLDKLQEV 702
                 5555656667777777777888889999999********************************************************9888887665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.28   1.9e+02      45      88 ..     563     606 ..     560     634 .. 0.52
   2 ?    9.3   0.1   0.00053      0.36      37      75 ..     657     695 ..     624     714 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.28
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqe 88 
                 lG  l  ++++ +A + f++++ ++p  + a  +l  +++ +++
  MMETSP1174-20130828|3935_1 563 LGHELEDRGDIPNAWRCFETATLRDPLASDANTMLGVMAMRANQ 606
                 55555566666666666666655554444443333333333222 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00053
   TIGR02795  37 lapnAqYwlGealyakkkykdAakaflevvkkypkseka 75 
                   ++A+ +lG a+++++   dA+++f+++++ +p++e  
  MMETSP1174-20130828|3935_1 657 TLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNEAL 695
                 5789999***********************999998765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00014     0.097     340     400 ..     633     694 ..     604     703 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
   TIGR00990 340 fkflkgkh.eealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsd 400
                 + +l+++  e+a   l+ ++ l P+l+q++       le+g   +a e f +al++++++  
  MMETSP1174-20130828|3935_1 633 MLLLRNHSlEDAVSHLRAAVRLAPTLAQAHELLGHAYLEQGRKGDATESFAAALRLNPQNEA 694
                 3345555426799*********************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.65
# Mc/sec: 1496.55
//
Query:       MMETSP1174-20130828|3937_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|3943_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-10   37.0   5.2    2.3e-05   21.9   0.0    3.1  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   9.7e-06      0.04      12      27 ..       2      16 ..       1      17 [. 0.84
   2 !   21.9   0.0   5.7e-09   2.3e-05       5      27 ..      21      41 ..      19      42 .. 0.89
   3 !    5.5   0.1   0.00087       3.6       4      13 ..      45      54 .]      43      54 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.7e-06
   TIGR01376 12 akgsGGAIyatgkisi 27
                ++++GGA+ya+ + ++
  MMETSP1174-20130828|3943_1  2 SANYGGALYAS-DSTL 16
                678*******9.8777 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 5.7e-09
   TIGR01376  5 ilFsnNsakgsGGAIyatgkisi 27
                 lF++Nsa  +GGA+ya   +++
  MMETSP1174-20130828|3943_1 21 CLFESNSAS-YGGALYAH-VATL 41
                79*******.*******9.8887 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.00087
   TIGR01376  4 tilFsnNsak 13
                + +F++Nsa+
  MMETSP1174-20130828|3943_1 45 SCSFESNSAG 54
                579*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|3944_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    9.9   8.0      0.037   11.7   2.9    2.1  2  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
        0.4    6.1  40.0        2.7    3.3  27.3    1.4  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.71    5.2  33.0          1    4.7  22.9    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.44   6.1e+02      47      61 ..      78      92 ..      59     122 .. 0.47
   2 ?   11.7   2.9   2.7e-05     0.037      39     110 ..     121     192 ..     120     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.44
   TIGR03830 47 akensaaiaefkrkv 61
                 ke++++ + +k + 
  MMETSP1174-20130828|3944_1 78 NKELNDENKGLKDQL 92
                444444444333332 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 2.7e-05
   TIGR03830  39 eelldeeeakensaaiaefkrkvdglltgeeirriRkklglsqkeaaellgggknafsrYErgevrpskals 110
                 e++l++ +++en+ +++    + d++ +++ei ++R+k+ +   e+    ++ +++ ++YE+++ ++++ l+
  MMETSP1174-20130828|3944_1 121 ESVLKASKEMENQHQLQHNTVNLDAEKAEKEILQLREKITMLNGELFISQDANSQQKEKYETQSEEQKRLLQ 192
                 67899999*********************************************************9998775 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  27.3     0.002       2.7     680     876 ..      84     272 ..      70     298 .. 0.23

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.002
   TIGR02168 680 eieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleee 876
                 e + l+ ++e +e++++e +k   e+  el+++++ele++ k+++e+e++++ +++ +   +  +e++e+++ ql+++++ l+ e    +++   +++++++ e+++ee+++ ++ ++ +lk+  e+ ++ + el + k+++   +e++++ +k+ ++ + +l e++ + ++l+++i+++++++++ e+e +  +++
  MMETSP1174-20130828|3944_1  84 ENKGLKDQLESFEANFEEVTKGRHEAMYELDQIRDELESVLKASKEMENQHQLQHNTV---NLDAEKAEKEILQLREKITMLNGELFISQDA---NSQQKEKYETQSEEQKRLLQSANGKLKTAVERSKSISLELMKAKDSVL-INEAASKERKKESDEKINLMEIALSEAKLNNQIANNTSALKSNEAE-NSKTTQ 272
                 1222222222222222222222222222222222222222222222222111111111...1111111111111111111111111111111...111111112222222222222222222222222222222222222222.1112222222222222222222222222222222222222222222.111111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  22.9   0.00076         1     694     884 ..      67     266 ..      45     303 .. 0.34

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00076
   TIGR02169 694 lqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklsel...eeeleekke.elkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqe....eieeleeqkkeiekeieelkakl..eeleeeleeleaavreLeee 884
                 l++e++ ++++ +el+++ +  + ++e  e++ e++ + ++++  +l++++++l+++   ++e+e++++ + ++++ + e+ e+++ +l+e++  l+ el  ++  ++ +++ek e++ ++++  l++++ +l+    + ++ + e  ++++    + ++ +e+kke  ++i+ +++ l  ++l++++++   a++  e+e
  MMETSP1174-20130828|3944_1  67 LMEEMTIVKNKNKELNDENKGLKDQLESFEANFEEVTKGRHEAMYELDQIRDELESVlkaSKEMENQHQlQHNTVNLDAEKAEKEILQLREKITMLNGELFISQDANS-QQKEKYETQSEEQKRLLQSANGKLKTAVERSKSISLELMKAKDsvliNEAASKERKKESDEKINLMEIALseAKLNNQIANNTSALKSNEAE 266
                 333333334444444444444444444444444444443333333333333333332110111111111011122222233333333333333333333333332222.22233333333333333333333333322111111111111110000111122222222222222222220011222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       466  (0.113603); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 736.58
//
Query:       MMETSP1174-20130828|3950_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 172.16
//
Query:       MMETSP1174-20130828|3951_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|3956_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 549.36
//
Query:       MMETSP1174-20130828|3959_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 467.62
//
Query:       MMETSP1174-20130828|3961_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|3962_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 475.96
//
Query:       MMETSP1174-20130828|3965_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1174-20130828|3967_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|3971_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 568.57
//
Query:       MMETSP1174-20130828|3975_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.25s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 357.84
//
Query:       MMETSP1174-20130828|3982_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    6.3   9.9        2.8    6.2   3.0    2.5  2  TIGR02420 dksA: RNA polymerase-binding protein DksA


Domain annotation for each model (and alignments):
>> TIGR02420  dksA: RNA polymerase-binding protein DksA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.0   0.00069       2.8      18      73 ..      84     142 ..      69     147 .. 0.81
   2 ?    2.7   0.1    0.0085        35      48      72 ..     152     176 ..     142     178 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00069
   TIGR02420  18 qelleeaektleelkeeseefaDeadrAtqEeeralelrtrdRerkLl...kKidealk 73 
                  e  ++ ++++++l+++ ++++ e d A+qE ++  el +  R+  L+   +Ki+++l+
  MMETSP1174-20130828|3982_1  84 AEAIAREKDHAKQLEDRLRDVTAERDGAKQEAKHGTELAATRRQMELValdEKIRRTLH 142
                 4555666778899********************************99833447777665 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0085
   TIGR02420  48 EeeralelrtrdRerkLlkKideal 72 
                  +er ++l+  d  + Ll +i++ l
  MMETSP1174-20130828|3982_1 152 RSERDFQLKRADEAQNLLYQIEHGL 176
                 46788999***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 698.77
//
Query:       MMETSP1174-20130828|3981_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00097   15.9   0.0     0.0013   15.5   0.0    1.1  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.3e-07    0.0013     404     443 ..     145     180 ..     141     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.3e-07
   TIGR03417 404 eqlydleadPkelenlaeepehaetlealraeaaarwdle 443
                 ++l+dl+ dP+e+++l+++p++a +l+ l+a+    w  +
  MMETSP1174-20130828|3981_1 145 TLLFDLDCDPHERTDLSRNPSYAGVLALLEAK----WRAA 180
                 689********************999888765....4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 822.10
//
Query:       MMETSP1174-20130828|3977_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.1   3.6      0.025   11.7   2.5    1.3  1  TIGR03473 HpnK: hopanoid biosynthesis associated protein HpnK
       0.35    9.0  10.1       0.71    8.0   2.3    2.4  3  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR03473  HpnK: hopanoid biosynthesis associated protein HpnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5   1.2e-05     0.025       3      49 ..      39      85 ..      37     114 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
   TIGR03473  3 rlivtaDDFGlseevneavekahrdGiLtaasLmvgadaaedavera 49
                +li  a D   + ev e v    + G+++ asL  +++a +dav+  
  MMETSP1174-20130828|3977_1 39 ELITEATDAAKDGEVKEEVSAITEAGVVARASLKLAGEALADAVSAV 85
                68999**************************************9764 PP

>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4    0.0085        18      17      33 ..      37      53 ..       5      60 .. 0.61
   2 ?    5.0   0.3     0.003       6.1      17      44 ..      37      64 ..      26      71 .. 0.78
   3 ?    8.0   2.3   0.00035      0.71      13      63 ..      73     124 ..      62     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0085
   TIGR00823 17 aRskalealkaakaGdf 33
                a   + ea +aak+G++
  MMETSP1174-20130828|3977_1 37 AEELITEATDAAKDGEV 53
                22334455555555555 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.003
   TIGR00823 17 aRskalealkaakaGdfakakelleeae 44
                a   + ea +aak+G++++  + ++ea+
  MMETSP1174-20130828|3977_1 37 AEELITEATDAAKDGEVKEEVSAITEAG 64
                445678999*******999888887775 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00035
   TIGR00823  13 yaGdaRskalealkaakaGd.fakakelleeaeeelaeahkaqtkllakeag 63 
                  aG+a + a+ a++ a++   +aka+e ++ ae ++a a  +  k++  ea 
  MMETSP1174-20130828|3977_1  73 LAGEALADAVSAVETAESPAvVAKAEETVKVAEVAVASAEAVVEKVVVAEAA 124
                 69**************9976279****************9999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       510  (0.12433); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 563.15
//
Query:       MMETSP1174-20130828|3983_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.4   9.6        2.1    4.3   6.7    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
        3.9    4.2  12.2        4.6    4.0   8.4    1.1  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.7     0.001       2.1     617     706 ..      45     134 ..      17     169 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.001
   TIGR04154 617 etvlvee.qeetgsqtvsvnkqryyetmvarLhlfdGsaaeps.allveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafae 706
                 ++++  +  +++ +q+++ ++q+ +  m+   h f+Gs+ +   +++++++++ ++   ++++++++ +n  + +  ++++n+ +a+ + ++
  MMETSP1174-20130828|3983_1  45 MPFVS-QfGQNQFQQQQQQQQQQMFPAMEQECHSFNGSSNSTIpQTITNYSQPFQMPIPSPQQEQQQ-QNQPTMTVMQSHYNQLQAQPMAQS 134
                 22222.2589999999*********************776666544444444444443333333333.233333333344444444333332 PP

>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.4    0.0022       4.6     266     375 ..      20     129 ..       6     144 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0022
   TIGR00237 266 saevrleraldtllaqkkarleqlaaslkrqspknklaakeakleklekrlqaalekqlertrqkktrl.tkrleqlnpsp.klkraqtrleqlerrlnkllnaqlkekrek 375
                  +  +++++ ++l++  +  ++  ++ +  q+ +n+++++++  ++ ++ + a++++   +    +    +++ +  +p +  +   q++ +q+++   ++++ + ++ + +
  MMETSP1174-20130828|3983_1  20 LQATQIDQSQQQLFHSFQPAIQYSQMPFVSQFGQNQFQQQQQ--QQQQQMFPAMEQECHSFNGSSNSTIpQTITNYSQPFQmPIPSPQQEQQQQNQPTMTVMQSHYNQLQAQ 129
                 345678999999999999999999999999999999999998..44455555555555555554444430444444444433477788888888888888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 705.32
//
Query:       MMETSP1174-20130828|3984_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|3980_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094    9.0  14.4       0.24    7.7   0.0    2.9  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   5.9e-05      0.24     340     371 ..      17      48 ..      13      53 .. 0.94
   2 ?   -1.0   0.0     0.024        99     178     199 ..      75      96 ..      67     105 .. 0.79
   3 ?   -6.9  13.2         1   4.1e+03      20      63 ..     241     283 ..     193     297 .] 0.39

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 5.9e-05
   TIGR01642 340 yaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                 +aF+ ++d  ++d A+ + +G +lg+++L v 
  MMETSP1174-20130828|3980_1  17 FAFITFDDRRDADDAVRGRDGYSLGGERLRVE 48 
                 9****************************986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.024
   TIGR01642 178 rlyvgniPpeakeeavvdFfnd 199
                 r++v+++P  a  +++ d f +
  MMETSP1174-20130828|3980_1  75 RVIVTGLPHSASWQDLKDHFRQ 96 
                 8889999999999988888876 PP

  == domain 3    score: -6.9 bits;  conditional E-value: 1
   TIGR01642  20 skeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsi 63 
                   eR+ +R+ d ++dRd d+  r+ s r+ + + d+ ++d+   
  MMETSP1174-20130828|3980_1 241 DDERDDDRREDDDEDRDGDKD-RDLSDRDADDKSDKVEEDEPAN 283
                 223333333333333332222.2222222222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1031.60
//
Query:       MMETSP1174-20130828|3986_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1221.67
//
Query:       MMETSP1174-20130828|3990_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.19s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|3992_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    4.9  10.8        0.5    8.3   1.2    2.3  2  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit
        5.7    3.6  16.0        8.5    3.0  11.1    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.0     0.021        43      89     125 ..       5      42 ..       1      46 [. 0.84
   2 ?    8.3   1.2   0.00024       0.5      65     127 ..      79     139 ..      76     153 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.021
   TIGR01216  89 eaeaeealeaaekklesae.dkkdlaeakkklkkarar 125
                 +a+++ +++  ++kle+a  ++++ a++++k+k+  ++
  MMETSP1174-20130828|3992_1   5 SASIQAKFKLVQAKLEEAVlEEQKSASIQAKFKEILTK 42 
                 6789999999********99999999999999986655 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00024
   TIGR01216  65 GflevepdkVtiLadeavrakeideaeaeealeaaekklesaedkkdlaeakkklkkararLe 127
                 G +++++  + iL  + +  +e   a+a+++ e+aekkl  ae    l+e +++l++ + +L+
  MMETSP1174-20130828|3992_1  79 GGVDIHKMGLYILTRDEYAQDEQIWAQAKQKAEKAEKKLTRAESA--LEECELELEESELKLD 139
                 667777777777777777777777778888888888888877755..5566666666665554 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  11.1    0.0042       8.5     122     244 ..      24     150 ..       1     162 [. 0.59

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0042
   TIGR01843 122 avaelvkeqeslfesrksa...lraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLel.ereraelqgelaeleaeleklkaeldeleeklqeleqkfreevs 244
                  +++  ++ +++f++ +++    r++ ++l a  kq++++le     ++a+r++   ++     l  L+ +++ +  ++ ++ +++ ++++++l ++e+ le+ + el+e e+kl+++e +f+++ s
  MMETSP1174-20130828|3992_1  24 LEEQKSASIQAKFKEILTKiiwKRNENARLLAVEKQKSSRLEVELVVQKAARDRWGGVDIHKMGLYILTRDEYAQDEQIWAQaKQKAEKAEKKLTRAESALEECELELEESELKLDQTEHEFAKRQS 150
                 3333333334444443333111466666666666666666666666667777777777777777777777777776665544155666778888888888888888888888888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 557.65
//
Query:       MMETSP1174-20130828|3994_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-10   36.1   0.0    2.5e-09   34.7   0.0    1.6  1  TIGR00938 thrB_alt: homoserine kinase


Domain annotation for each model (and alignments):
>> TIGR00938  thrB_alt: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   6.1e-13   2.5e-09      99     275 ..       4     203 ..       2     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 6.1e-13
   TIGR00938  99 aalvefLkGssva...kPtaercrevgevlaklhlagadfkeerkndlrleaWsilaakk.fkvleqleeelaall.d...keldal..kkflprdLPrgvihadlfkdnvlldgdk..lk............gvidfyfaCedallydlaiavndWcfea.ddkldaaaakallkgyeavrpLseeekaafpvllrgaalr 275
                 a lv+fL+G+++a    P+++  +++g++ a+  +a a++    ++  r  +W  + a   ++  +++e  ++ +l d   +++dal  ++ l   LPr vih dl   nvl+dg++  l+            +v+df    +  ++ ++aia+   c ++ d    +aa++ +l gy +v++L +ee   + +l  +  ++
  MMETSP1174-20130828|3994_1   4 ARLVSFLPGQDLAdvpTPPPALLQRIGATVARCDMALASWAPPAAD--RVLHWDLANAGAvRRHFHEIEGSEKLELaDkwlSKFDALlcNDALIATLPRQVIHGDLNDRNVLIDGEGgaLSpeylrpvdtagvAVLDFGDMVNTFRVCNIAIALAYVCQNKaDVPNVIAAMQDVLWGYSQVQALLQEELGVLQTLVGARLVQ 203
                 779******97542227999999*****************999998..888898776544366777776555444313111445554224455678******************9854343333334444444789**********************986155566788899***************99998887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.29s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 807.28
//
Query:       MMETSP1174-20130828|3995_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.30s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1232.97
//
Query:       MMETSP1174-20130828|3999_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|4007_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    3.9  15.3        4.3    3.5  10.6    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  10.6    0.0011       4.3      60     125 ..     125     192 ..     111     205 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0011
   TIGR03319  60 vkklreelekelkerrkelqkle..krlkqkeekldrkkeklekkeeelekkekeleekekeleekee 125
                   ++ ++l++el++ +++++k+   ++  +k+e+l+ +++  e++eeel+ +++eleek+++ ++ ++
  MMETSP1174-20130828|4007_1 125 HAREEKKLQRELRKAKAKMKKQMqlQKWYEKKEQLEMENAMKEQTEEELQLRQQELEEKKRQRRALQA 192
                 33334444444444444443332114566677777777766666777777777777766665444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       705  (0.171867); expected 82.0 (0.02)
Passed bias filter:                      272  (0.0663091); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.28s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 538.11
//
Query:       MMETSP1174-20130828|4009_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.53
# Mc/sec: 318.77
//
Query:       MMETSP1174-20130828|4010_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|4012_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|4013_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-09   32.4   0.0    6.4e-09   32.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.2e-07   27.9   0.0    4.9e-07   27.2   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.1e-12   6.4e-09      76     187 ..     119     229 ..     101     242 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 3.1e-12
   TIGR03903  76 LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  + ++t +L  q+L+ + + h++ ++hRD+kP n +v+ +d+++    +DFG++    + + + +      + + G+P Ya+ +   g     + Dl a G +++    G+ 
  MMETSP1174-20130828|4013_1 119 FSLKTTLKLADQILERVDMVHSRHLIHRDIKPANFVVA-SDTSELVYCIDFGLSKRYRNPHTMTHIPHRIGKSLTGTPRYASINNHLGVEHARRDDLEAIGYVLIYFFKGRL 229
                 5668999***************************9986.68888999***********999999999999999*********999889889999999999999887777765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.4e-10   4.9e-07      79     156 ..     103     191 ..      61     202 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2.4e-10
   TIGR03724  79 iegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk...ddklyliDfGLgkkskevedkavDlhvlkrsl 156
                 + g  l+dl+++           +l+ ++ e v ++H+  ++h D+ ++N++v    ++ +y iDfGL+k+ ++   +    h + +sl
  MMETSP1174-20130828|4013_1 103 LLGASLEDLFTKCGRrfslkttlKLADQILERVDMVHSRHLIHRDIKPANFVVAsdtSELVYCIDFGLSKRYRNPHTMTHIPHRIGKSL 191
                 4556666666654445555556689999999**********************633366799********9887776665555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.55
# Mc/sec: 1543.07
//
Query:       MMETSP1174-20130828|4016_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 775.44
//
Query:       MMETSP1174-20130828|4021_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   14.3   2.4      0.026   12.6   1.6    1.8  1  TIGR01031 rpmF_bact: ribosomal protein L32


Domain annotation for each model (and alignments):
>> TIGR01031  rpmF_bact: ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.6   6.4e-06     0.026      14      48 ..       7      41 ..       6      44 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.4e-06
   TIGR01031 14 kRRshdaklkaptlvecpncGelklpHrvckscGy 48
                ++R++ a++ a+   +c ncGel l  + ck cGy
  MMETSP1174-20130828|4021_1  7 RKRAKLARKLARRRFKCRNCGELNLKGMYCKGCGY 41
                689999999*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 964.25
//
Query:       MMETSP1174-20130828|4019_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-11   41.7   0.7      8e-05   20.3   0.0    2.3  2  TIGR03664 fut_nucase: futalosine nucleosidase
    9.2e-08   29.7   0.8    2.7e-07   28.2   0.6    1.7  1  TIGR03468 HpnG: hopanoid-associated phosphorylase
    9.6e-05   19.8   0.1      0.096   10.0   0.0    2.3  2  TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
  ------ inclusion threshold ------
      0.015   12.6   0.0      0.053   10.8   0.0    1.9  3  TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific


Domain annotation for each model (and alignments):
>> TIGR03664  fut_nucase: futalosine nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.1e-07   0.00011      45      88 ..     301     344 ..     239     350 .. 0.65
   2 !   20.3   0.0   7.8e-08     8e-05     165     203 ..     399     437 ..     375     458 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
   TIGR03664  45 GkvaAAaataaalarapvelvislGiaGgfpgkaevGdlvlade 88 
                 G ++A a  a a    +++l++s+G aGg pg a+vGd+vla+ 
  MMETSP1174-20130828|4019_1 301 GYTQASAVAALACRLLEPSLIVSFGTAGGVPGLASVGDVVLAEG 344
                 44444444444444458************************986 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 7.8e-08
   TIGR03664 165 alaerlgavaEnMEGaavavaaraagvpvlelRgiSNlV 203
                 +++ ++g  + +MEGa +a+++++agv++l +  iSN V
  MMETSP1174-20130828|4019_1 399 EIIDKMGIACLDMEGAPIAQICNQAGVNLLVMKVISNGV 437
                 56677888899**************************98 PP

>> TIGR03468  HpnG: hopanoid-associated phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.6   2.6e-10   2.7e-07      26     156 ..     299     435 ..     287     445 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.6e-10
   TIGR03468  26 lagsgperaaaaaerleeagvaglvSfGvAGaLdpaLkpGdlvvpeevra.egerlpadsawrrrl.......lealeaalrvsagvlaasdevvssaaeKaalaaatgAaaVDMESgavaavAaeaglPFlviRviaD 156
                 ++g  ++ a aa+++    + + +vSfG+AG+      +Gd+v++e     +  r    +a+   l       + +l  al ++ g +a+     +s+ + + + ++ g a  DME + +a+++++ag+  lv+ vi+ 
  MMETSP1174-20130828|4019_1 299 YSGYTQASAVAALACR-LLEPSLIVSFGTAGGVPGLASVGDVVLAEGCLFlDRLRTRSKNAFDWGLwgggcvsASQLRSALSLKGGAVASQIGYQVSPLQEE-IIDKMGIACLDMEGAPIAQICNQAGVNLLVMKVISN 435
                 5666666555555554.3455779*********99999*******986553444444444444333111111134455566899999999988888888776.9999******************************86 PP

>> TIGR01704  MTA/SAH-Nsdase: MTA/SAH nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   9.3e-05     0.096      51      98 ..     302     349 ..     262     372 .. 0.84
   2 !    7.8   0.0   0.00046      0.47     168     197 ..     406     435 ..     368     467 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9.3e-05
   TIGR01704  51 kvaaalsatlllerykpdvvintgsagglahtlkvgdvvvsdevryhd 98 
                   +a+  a+l      p +++  g+agg+     vgdvv+++ + + d
  MMETSP1174-20130828|4019_1 302 YTQASAVAALACRLLEPSLIVSFGTAGGVPGLASVGDVVLAEGCLFLD 349
                 4556666777777889************************98776655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00046
   TIGR01704 168 liavemeaaavaqvchqfkvpfvvvralsd 197
                 +  ++me a +aq+c q  v ++v++ +s+
  MMETSP1174-20130828|4019_1 406 IACLDMEGAPIAQICNQAGVNLLVMKVISN 435
                 45689**********************996 PP

>> TIGR01700  PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       1.9   1.9e+03      95     109 ..     115     129 ..     110     134 .. 0.59
   2 ?   -2.3   0.0      0.52   5.3e+02      85     110 ..     319     345 ..     290     352 .. 0.67
   3 ?   10.8   0.0   5.2e-05     0.053     164     241 ..     387     468 ..     369     474 .. 0.73

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 1.9
   TIGR01700  95 intefkvGdlmlikd 109
                 + +++k+ ++ml+ d
  MMETSP1174-20130828|4019_1 115 VSPSLKHREVMLLDD 129
                 445666666666655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.52
   TIGR01700  85 alvvt.naaGgintefkvGdlmlikdh 110
                 +l+v+  +aGg+     vGd++l +  
  MMETSP1174-20130828|4019_1 319 SLIVSfGTAGGVPGLASVGDVVLAEGC 345
                 344542689999999999999987655 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 5.2e-05
   TIGR01700 164 avtGPsyetpaevrllkklGadavGmstvpevivarhcGlrvlglslitnkaagildaels.....dheevlevakkakekle 241
                 +  G +  +p + ++++k+G   + m   p   + +++G+ +l++ +i+n ++    ++++     ++eev + a ka  +l 
  MMETSP1174-20130828|4019_1 387 SQIGYQV-SPLQEEIIDKMGIACLDMEGAPIAQICNQAGVNLLVMKVISNGVYPGEPKRMEseyhlNREEVSRRATKALTQLF 468
                 4455443.566678999*********************************998554444443444677888877777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.73
# Mc/sec: 866.07
//
Query:       MMETSP1174-20130828|4032_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.41
# Mc/sec: 112.67
//
Query:       MMETSP1174-20130828|4035_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 267.45
//
Query:       MMETSP1174-20130828|4037_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.89
# Mc/sec: 86.02
//
Query:       MMETSP1174-20130828|4041_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 616.71
//
Query:       MMETSP1174-20130828|4042_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-08   30.3   0.0    3.6e-07   28.2   0.0    1.9  1  TIGR02181 GRX_bact: glutaredoxin 3
      2e-05   22.3   0.1    0.00013   19.7   0.0    2.2  2  TIGR02190 GlrX-dom: glutaredoxin-family domain
    0.00012   20.0   0.0    0.00018   19.5   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
     0.0084   13.9   0.0      0.013   13.4   0.0    1.5  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family


Domain annotation for each model (and alignments):
>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.5e-10   3.6e-07       1      80 []      84     175 ..      84     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.5e-10
   TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk........earee...mierskgrrtvPQifigdvhv...GGcddLlaleregkLdkLL 80 
                 v iYt +  p++++A  lL++ g e+++ie+  +         ++r+    m+e  +g +++P ifig + +    G++ L+++ ++g+L++LL
  MMETSP1174-20130828|4042_1  84 VLIYTYALSPFSTEALGLLDSTGYEYTKIELGLEWftlgpngsQTRKVlgsMCE--NGATSLPKIFIGGQPLrgaSGYSALAEVIENGELENLL 175
                 78****************************976533333344344444111444..4689*********98732257899************98 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.8   1.8e+03      43      54 ..      54      65 ..      51      67 .. 0.77
   2 !   19.7   0.0   1.2e-07   0.00013       4      70 ..      78     155 ..      75     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.8
   TIGR02190 43 dirtrslravtG 54
                +i++ +l+av G
  MMETSP1174-20130828|4042_1 54 GIQAAALGAVGG 65
                577889999988 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.2e-07
   TIGR02190   4 arkkesvsvftkpGCPfCakakavLkekGldfeeivLg........kd.irtrslrav..tGattvPqvfinGkliGg 70 
                 a+   +v ++t    Pf  +a  +L   G+++  i Lg        ++  + ++l+++   Gat+ P++fi+G+ + g
  MMETSP1174-20130828|4042_1  78 AKSSSEVLIYTYALSPFSTEALGLLDSTGYEYTKIELGlewftlgpNGsQTRKVLGSMceNGATSLPKIFIGGQPLRG 155
                 56778999***************************9983333322322134578888744599**********97655 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-07   0.00018       1      83 [.      84     174 ..      84     175 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.8e-07
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevvel.....dklengselqdyLkelt..gqrtVPrifingkfiG...Gsddlkklekkgkleel 83 
                 V+++     p++++a  lL+++  +  +  +el     +   ngs+ +++L ++   g++++P+ifi+g+ +    G++ l+++ ++g+le+l
  MMETSP1174-20130828|4042_1  84 VLIYTYALSPFSTEALGLLDSTGYE--YTKIELglewfTLGPNGSQTRKVLGSMCenGATSLPKIFIGGQPLRgasGYSALAEVIENGELENL 174
                 788999999**********998766..5555551111145589**********9633789*********987502255666667778888765 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.2e-05     0.013      54      97 ..     136     181 ..      75     183 .] 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR02189  54 lelgskeavPvvfvGGklvGgle...evmalhlsgsLvpllkkagal 97 
                  e ++++++P +f+GG+ + g+     +  +  +g+L +llk++ga 
  MMETSP1174-20130828|4042_1 136 CE-NGATSLPKIFIGGQPLRGASgysALAEVIENGELENLLKSSGAK 181
                 22.47899*********99776512145555669*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 670.94
//
Query:       MMETSP1174-20130828|4043_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 492.42
//
Query:       MMETSP1174-20130828|4044_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 413.00
//
Query:       MMETSP1174-20130828|4046_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   16.5   0.1      0.003   15.5   0.0    1.5  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1


Domain annotation for each model (and alignments):
>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.3e-07     0.003       2      29 ..     142     169 ..     141     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.3e-07
   TIGR00411   2 kielftsPtCPyCPkakkvveevakeeg 29 
                 +++  tsPtCPy  +a++v e ++ ++ 
  MMETSP1174-20130828|4046_1 142 RMRSCTSPTCPYVMAAIRVCELIRSDFK 169
                 67788**************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1424.57
//
Query:       MMETSP1174-20130828|4049_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|4051_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|4053_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 235.98
//
Query:       MMETSP1174-20130828|4052_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    3.6  34.6        1.5    5.2   7.9    2.2  2  TIGR01651 CobT: cobaltochelatase, CobT subunit
          6    2.9  10.5        9.3    2.2   7.3    1.3  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.9   0.00073       1.5     194     288 ..     296     394 ..     275     401 .. 0.77
   2 ?    4.3  10.5    0.0013       2.7     229     296 ..     526     592 ..     492     640 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00073
   TIGR01651 194 laslelaeelgdd....eesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrpft 288
                 l+ ++     +d      ++ed+  ++dd+p++ + + e++ + +++   + ++a a +e++e+ ee+a  a++  ++ e    ++t+g+ + ++ p +
  MMETSP1174-20130828|4052_1 296 LSRFDEDAAKADVtpegGDKEDSAPNQDDAPKKTDVDSEANVKASKKRLKSLNKALARAEDTEEDEEDAYPAEEMAQQLEAALVSQTTGDERENNTPVA 394
                 444433333333311113467788899**************99999999999********************************************986 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0013
   TIGR01651 229 geeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrpftdlneevdy 296
                  +e ++ +e s++  a+ aeee e++eee +  ++ d ++e++e+ae+p +  ++d   ++ +ee + 
  MMETSP1174-20130828|4052_1 526 DKEADQAQEVSPPSVADDAEEEGEESEEEESSQEE-DGDEEEEEEAEAPAKMSKEDTAKAERAEEKEL 592
                 22334444555555555555555555544443332.33334445555555555555555555554444 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   7.3    0.0045       9.3     203     432 ..     315     642 ..     285     650 .] 0.45

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0045
   TIGR00934 203 svhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeesses..................................................................rriqekikrrlstssiekns........................................................qqnltrlaktksfddskavrlersktidraea....sdleeldrakdfqkmveknvk..aakrkkknfkkreanlklfeksryakksdrneedngn....kkdasksneseevsldsee...naypty 432
                 +  s  n++d ++ t  d++ +   ++ s    k+   + +k   r e  + d ed y +++m+q + ea             ++++ de++ ++                                                                  r            +                                                              q + + l+++k  d  +a+++++  + d ae+    s++ee+++++d ++  e++ +  a+  k+++ k + a+ k    s ++kk++r +   +     k ++s++  +++ +l+++    n ++t+
  MMETSP1174-20130828|4052_1 315 KEDSAPNQDDAPKKTDVDSEAN---VKAS----KKRLKSLNKALARAEDTEEDEEDAYPAEEMAQ-QLEAAL----------VSQTTGDERENNTpvagerplfeglrfffsresqyswlecairsfggavgwdgeaspiqksdpnithfiydrptapqltR------------A-----DadyvqpqwvvdsinamcllpvmryvpgaalpphlspfvddakegyipayreeldklQSAAHVLKDDKEAD--QAQEVSPPSVADDAEEegeeSEEEESSQEEDGDEEEEEEAEapAKMSKEDTAKAERAEEKELAISMMPKKAKRLYGRMQHgmklKAEKSDNLRQKRKELEENSteeNRQSTK 642
                 3333344444444444444444...2222....22223456666677777777777777777777.333222..........22222222222222222333333344444444455555555555666666666666666666555543333333333320............2.....24444466666666666677777777777777777777777777777777666666666666666666666..4444444444444433000033333333333333333322200333333444444455555555666666665554333333442222222222222222221111222322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.81
# Mc/sec: 1059.17
//
Query:       MMETSP1174-20130828|4054_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 609.40
//
Query:       MMETSP1174-20130828|4055_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|4058_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|4061_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1174-20130828|4066_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|4071_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 278.98
//
Query:       MMETSP1174-20130828|4072_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   12.9   0.1      0.011   12.5   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.7e-06     0.011     238     290 ..     209     259 ..     194     277 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.7e-06
   TIGR02037 238 LGvkiqevtkdlakslglekakGalvaevlkgspAekaGlkaGDvilkvngkk 290
                 LG+k+++  k++  +l+ e a+ ++v+++ +g+  + aG+ +GDv+  vng++
  MMETSP1174-20130828|4072_1 209 LGIKLEA--KEVPGALEGEVAELSYVSAIHPGGVCDLAGISVGDVVCFVNGES 259
                 7777664..78888999999999***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1091.59
//
Query:       MMETSP1174-20130828|4074_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.21s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 766.79
//
Query:       MMETSP1174-20130828|4075_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.4   0.0       0.11    9.7   0.0    2.0  2  TIGR02224 recomb_XerC: tyrosine recombinase XerC


Domain annotation for each model (and alignments):
>> TIGR02224  recomb_XerC: tyrosine recombinase XerC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.024     1e+02      65     103 ..       2      40 ..       1      48 [. 0.86
   2 ?    9.7   0.0   2.7e-05      0.11     204     247 ..     282     325 ..     270     340 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.024
   TIGR02224  65 slarklsalrsFykfllkegllkenpaaavrapkkekkL 103
                 s  +++sa+  F +++   + ++e +a  v+ + k+k L
  MMETSP1174-20130828|4075_1   2 SKDQEISAWHRFEAYCWMMHPTHEYTAWLVQVKNKTKDL 40 
                 567899***********9999999999999999888876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 2.7e-05
   TIGR02224 204 alflnkrGkrlsersvqkrlkkllekaglskkvsPHaLRHsfAt 247
                  +f + +G+ l++   ++ ++ +  ++   ++++ H +R s At
  MMETSP1174-20130828|4075_1 282 PIFQGDNGEYLTPPFWYRTVNAIFDMVPRLQHCTSHSIRRSAAT 325
                 58*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1152.70
//
Query:       MMETSP1174-20130828|4073_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-13   45.7   0.0      3e-12   44.1   0.0    1.8  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.1e-09   35.7   0.0    1.8e-09   34.9   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.2e-09   35.7   0.0    2.6e-06   24.8   0.0    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.2e-09   35.0   0.0     0.0008   16.9   0.0    2.4  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.7e-09   33.2   0.1    1.2e-07   28.3   0.0    2.6  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.7e-09   32.9   0.1    1.5e-08   31.2   0.0    1.8  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.9e-09   33.1   0.1      1e-08   32.1   0.0    1.5  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.8e-09   33.8   0.0    1.6e-07   29.1   0.0    2.4  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    8.2e-09   33.1   0.0     0.0016   15.9   0.0    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.8e-08   30.3   0.0     0.0002   18.7   0.0    2.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.1e-08   29.1   0.0    8.9e-07   25.3   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.6e-08   30.0   0.0    1.5e-07   29.0   0.0    1.5  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-07   29.0   0.0    2.1e-07   28.2   0.0    1.4  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.8e-07   29.0   0.1    1.4e-05   22.8   0.0    2.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.8e-07   28.6   0.0      0.007   13.6   0.0    2.3  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      3e-07   26.9   0.0    1.1e-06   25.1   0.0    1.9  1  TIGR00958 3a01208: antigen peptide transporter 2
    9.2e-07   26.2   0.0    0.00094   16.3   0.0    2.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.4e-06   25.8   0.0    6.9e-06   23.6   0.0    2.1  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.7e-06   25.3   0.0    6.8e-06   23.4   0.0    1.9  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.9e-06   24.5   2.8    1.7e-05   21.4   0.0    2.8  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.6e-06   24.2   0.0    6.2e-06   23.5   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.2e-06   23.6   0.0    2.2e-05   21.6   0.0    1.8  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.7e-06   23.1   1.6    3.4e-05   20.5   0.0    2.5  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.6e-06   23.2   0.0     0.0083   13.4   0.0    2.4  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.2e-05   22.4   0.5     0.0072   13.4   0.0    2.6  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.7e-05   22.3   0.0    0.00046   17.6   0.0    2.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.9e-05   21.4   0.1      0.018   12.3   0.0    2.4  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      5e-05   20.9   0.0    0.00079   17.0   0.0    2.1  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.5e-05   19.7   2.1      0.011   12.0   0.0    2.8  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    0.00011   18.7   0.0    0.00029   17.3   0.0    1.7  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    0.00014   18.3   0.0    0.00027   17.3   0.0    1.4  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    0.00067   17.1   0.0     0.0012   16.3   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
     0.0013   16.1   0.0       0.25    8.6   0.0    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
     0.0067   12.9   0.0      0.022   11.2   0.0    1.7  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
     0.0075   13.6   0.0       0.34    8.1   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
  ------ inclusion threshold ------
      0.026   11.8   0.0      0.058   10.6   0.0    1.5  1  TIGR01978 sufC: FeS assembly ATPase SufC
      0.028   11.9   0.1       0.41    8.1   0.1    2.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD


Domain annotation for each model (and alignments):
>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   2.7e-14     3e-12     157     512 ..     273     664 ..     254     676 .. 0.74

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 2.7e-14
   TIGR02857 157 ipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkl...dlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvev.ld.aeeqpeaekapltaaass........................slelenvsvayegrk......palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllf..egtvaenirlarkdaseae.......vkealeragldelvkalpqglete..iGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvll 512
                 i  F+ +  s+  +  ++q++a ++L +h++  v   + ++ + r + e+++ +   +++ ++ ++       S      l+t+ vA   Vy G +++ g++   ++ + +++  La   ++   ql  +   + + +a + +  ++ +d  + ++ + k+ +   +++                         +++ nvs++y+ ++       +l+++ l++++g+lv + Ga G GK+t+lkll+  v pt+ a +    +l  + ++    ++  v+ +Pl++  ++t++en+  + k+  + +        +  l+r g+++ + +    ++t+  +G +g  +   +rq + L ra+l + +++++  P+a L +++++  l+ +re++++r vl+
  MMETSP1174-20130828|4073_1 273 IFAFLKVRASKGFDLRQHQFDAENNLVDHVIRTVLNYQLVADYDRRTFEVEKYQGFINAFNKASVAYAAFTVNSKYFVPWLTTVLVASWMVYGGSSVIDGNIllsTYLSTITIFRLAGGEFEKSYQLQLRITSAYASIAQVTQYLNLpIDvPTRRVFSRKRRAFGRQMRqetraslaggklsydptllavdrlPIKMVNVSFSYKTADstrnpeSILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPAQE----TLVFTPPH---LRCVQVQENPLVLgpHETILENMTYGIKKSPSIDwaaleerSRIILKRLGMADHIME---SFKTPgfLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVLM 664
                 444666666777778888888889999999999988888899999999999999989999998888888888888888999999999999999999998866122445566777788888877777777654444444444443333122544555555555555444477778889999999999999999999*******9954322122334799*********************************99987644....45555555...5688999***9975579******9887665443322222224445566665554444...4444333*********************************************************9997 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.6e-11   1.8e-09      21     170 ..     486     642 ..     476     660 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.6e-11
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrar.kqskaliaervadalklvqlsda...aarlpaqls..G.....Gqqqrvalaralvvrpdvllldeplsald 170
                 + +l +++le   G+l+ + G +G Gk+t+l+++a  v +       a+  l   pp+ r + +  +   l ph ++ en+++G++       a ++er    lk ++++d    + + p  l   G       +q + l ra+ ++p+++++ +p + l+
  MMETSP1174-20130828|4073_1 486 ESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDP----AQETLVFTPPHLRCVQVQENPLVLGPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMADHimeSFKTPGFLGvnGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLN 642
                 57899*********************************99864....788999*********99999999**************97652567799****************73324577876642122221156899******************987775 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023      0.26      13      47 ..     485     519 ..     470     524 .. 0.87
   2 !   24.8   0.0   2.4e-08   2.6e-06      96     196 ..     556     662 ..     543     669 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                  ++ l+++ le+++ k++ + G +G Gk+t+l+ l
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLL 519
                 567899**************************977 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 2.4e-08
   TIGR00972  96 msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkk......salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkyti 196
                  +i++n++yg++ +   d ++l+e+ +  Lk+ ++ d++ +  k+      +++ +    +q + + ra  ++Pe++++  P++ L+ ++++   ++++e  ++  +
  MMETSP1174-20130828|4073_1 556 ETILENMTYGIKKSPSIDWAALEERSRIILKRLGMADHIMESFKTpgflgvNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGV 662
                 58*************************************9998872221114556666899*****************************99999999998877655 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.2e-06    0.0008       3      52 ..     468     520 ..     466     525 .. 0.81
   2 !   15.6   0.0   1.7e-05    0.0019      98     193 ..     557     662 ..     550     702 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.2e-06
   TIGR02982   3 kirelnhyygkgelrk...qvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                 k+ +++  y + +  +    +l ++ le  +g +v + G++G Gk+t+l l++
  MMETSP1174-20130828|4073_1 468 KMVNVSFSYKTADSTRnpeSILSNMALEFPQGKLVEMRGAAGGGKATVLKLLA 520
                 56677777766554431227******************************986 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.7e-05
   TIGR02982  98 taeqnvrmalelkeklsakeakakaeelleavglee..........rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgt 193
                 t  +n+  +++ ++++  ++ +++++ +l+ +g+ +           l  +   ++   +q + + ra+  +P++++   P+a l++k ++  + ++++   ++g+
  MMETSP1174-20130828|4073_1 557 TILENMTYGIKKSPSIDWAALEERSRIILKRLGMADhimesfktpgFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGV 662
                 56678888888888899999999999999999999944433333333333344456789****************************************9985553 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.61        67     352     461 ..     322     434 ..     256     443 .. 0.74
   2 !   28.3   0.0     1e-09   1.2e-07     466     656 ..     467     663 ..     464     665 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.61
   TIGR03375 352 Weqvvaalakvslklrllsalltnlaalvqqlvsvav...vvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsrek 461
                  e++ +++   +  + +++a+++n+  +v  l++v+v   +v G   +++g++ + + + +  +   a + + +  +l  r++ a +++ ++ + ++lp + ++++ + ++++
  MMETSP1174-20130828|4073_1 322 VEKYQGFINAFNKASVAYAAFTVNSKYFVPWLTTVLVaswMVYGGSSVIDGNILLSTYLSTITIFRLAGGEFEKSYQLQLRITSAYASIAQVTQYLNLPIDVPTRRVFSRKRR 434
                 56666666666666666677777777777777776663335777778888888887777776666666677888888999999999999999999999999887776665554 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 1e-09
   TIGR03375 466 ielknvsfkYpeee.....kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvp.qdvtLfyG...tlrdNialgap.......aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlv 656
                 i++ nvsf+Y+ ++     ++ L+n+ l+   G  v + G  G GK+t+lkll+  + pt+ +      ++  + p +lr    +v+ q++ L  G   t+ +N+++g +       aa +e+   ++++ G+ + + ++ k     +g +G  +    rq++ l Ra+l++p+++++  P++ l +++ + +l  ++e++ ++ ++
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTADstrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPAQ-----ETLVFTPPHLR----CVQvQENPLVLGpheTILENMTYGIKkspsidwAALEERSRIILKRLGMADHIMESFKTPG-FLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVL 663
                 67889*****875511222568*************************************97653.....34444555555....3322666677665558999999886533433333445556668999999999988877655.5899*************************************************99988766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       3.5   3.8e+02     210     275 ..     172     238 ..     158     248 .. 0.68
   2 !   31.2   0.0   1.3e-10   1.5e-08     456     646 ..     467     663 ..     455     671 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.5
   TIGR01846 210 idvelgaklyrhllalPlsyfesrrvGdtvarvreleqireflt..gsaltvvldllfvvvflavmff 275
                 ++  l  +l   ll + l y e  r   +v +v  ++ +r+ +   ++a +v +dl+f  +   v++ 
  MMETSP1174-20130828|4073_1 172 VGGGLRKHLQILLLKMFLNYDEASRSKVAVEKV-VMAMVRDVVDavSEAYIVSIDLVFGSIVKLVLLI 238
                 555555566666777778888888888888887.4888888875114677888899887766555544 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.3e-10
   TIGR01846 456 iefenirfryke.ds....pevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlf...srsirdniala...kPais....eekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtvi 646
                 i++ n+ f yk  ds     ++lsn++l+ ++G+++ + G +G Gk+t+ kll     P         ++  +  P  lr    v +qen l+   + +i +n++ +   +P+i+    ee+ + + k  G  d i+e  +     +g +G+ ++   rq i l ra++ nP ++i+   ++ l+ +  ++    +re   +r v+
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTaDStrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDP-----AQETLVFTPPHLR---CVQVQENPLVlgpHETILENMTYGikkSPSIDwaalEERSRIILKRLGMADHIMESFKT-PGFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVL 663
                 788899999985233222146**********************************9999875.....3455566788898...578899988733456899**987533368777222245556666667888888765432.234999******************************************************997 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.2e-11     1e-08     225     525 ..     331     664 ..     189     665 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 9.2e-11
   TIGR02868 225 eltraekraaaaealgaaltllaaGlavllallvgveavadgrl.apvalAvlvL.............lpLaafealaalpaAaqqltrvraa.aeRieevldakvevaeasapaaeaaas...........ekptlelrdlsvsypga.....ee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF..dttvreNlrlarpda.......tdeellaaLervgLadwlraLpdGldt..klgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvl 525
                 ++ +a+   aa++  ++    +++ + v++ ++ g++ v dg++   + l  + +             l+L ++ a+a ++++ q l+   ++  +R+    + +  +++ ++ +a+ a+            ++  +++ ++s+sy++a     +e +l+++ l+ ++G+ v++ Ga+G GK+t+l+lla ++ p ++   +    + +l      r+v+ +++++ +   + t++eN+  + ++         +e    +L+r g+ad++ +     +t   lg +g  +   +rq + l Ra l + +++++  P++ L+ ++++  l+++++  ++r v++
  MMETSP1174-20130828|4073_1 331 AFNKASVAYAAFTVNSKYFVPWLTTVLVASWMVYGGSSVIDGNIlLSTYLSTITIfrlaggefeksyqLQLRITSAYASIAQVTQYLNLPIDVpTRRVFSRKRRAFGRQMRQETRASLAGGklsydptllavDRLPIKMVNVSFSYKTAdstrnPEsILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPAQETLVFTPPHL------RCVQ-VQENPLVLgpHETILENMTYGIKKSpsidwaaLEERSRIILKRLGMADHIME---SFKTpgFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVLM 664
                 44444444444444445555555666666666666666666654234444444440001111111111233334444444444444433332213344444444433333333333322224456666776788888888999999764222225679********************************99877776554333334443......4554.567777763468*********9988666665456666678999999999988...4555226**************************************************99999998876 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.4e-09   1.6e-07       2     185 ..     467     658 ..     466     677 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.4e-09
   TIGR02673   2 ielekvskeyaag......veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkll..kdrtvlenvalalevr.gkkeeeiqkrveevlelvgledkak...alpeel.......sgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk 185
                 i++ +vs++y+++       ++L+++ l++ +g+++ + Ga+G Gk+t+lkll  a  p+  + e            + p+lR    v  q++ l+  ++ t+len+   ++ +   + +++++r + +l+ +g++d++    ++p  l        + ++q + + Ra + +Pe+++   P   l++++++  l++++e+ +
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTAdstrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPAQE--------TLVFTPPHLR---CVQVQENPLVlgPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMADHIMesfKTPGFLgvngvciTRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVD 658
                 5677888888743111111579***********************************99986432........2223346776...34556666653379********999876256778999*************986511145655422222226889*************************************999754 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05    0.0016       5      58 ..     470     526 ..     467     544 .. 0.80
   2 !   14.9   0.0   2.8e-05    0.0031     143     190 ..     612     659 ..     554     665 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-05
   TIGR02211   5 enltksykegkle...ievlkgvsleiekgelvaivGssGsGkstllhllggldkpt 58 
                  n++ syk+ + +    ++l+++ le  +g+lv + G++G Gk+t+l ll+    pt
  MMETSP1174-20130828|4073_1 470 VNVSFSYKTADSTrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPT 526
                 566667776654411167********************************9765555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.8e-05
   TIGR02211 143 sGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnke 190
                 +  +rq + + ra++ +P++++   P++ l++k+ak  + +++e+  +
  MMETSP1174-20130828|4073_1 612 TRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDN 659
                 4578***************************************98665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.8e-06    0.0002      10      45 ..     485     520 ..     470     530 .. 0.89
   2 !    9.0   0.0    0.0017      0.18     138     184 ..     614     660 ..     551     679 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.8e-06
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilg 45 
                  ++il+++ l++ +G+lv + G +G GK+t+L +l+
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLA 520
                 468******************************998 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0017
   TIGR03608 138 GekqRvalarillkeselilADEPtgsLDkknreevlellkelkeeg 184
                  ++q + l r+ l ++e+i+   P + L++k+ +  l++++e  ++ 
  MMETSP1174-20130828|4073_1 614 ADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNR 660
                 57899***********************************9988754 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     8e-09   8.9e-07     372     526 ..     339     520 ..     314     529 .. 0.79
   2 ?    1.1   0.0      0.16        18     619     655 ..     614     650 ..     598     661 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 8e-09
   TIGR03796 372 lgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee..............eeekaaeseek...................ekLsGkvelrnvtfgysale.....apliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                   + t+  + +   lt++  a+ +v gg  v++g++ + ++++  ++      + ek  +l  ++ +  a ++++   l+ p+d  +++              +         +                    +L   +++ nv+f+y++ +     + +++++ l+  +G+ v + G++G Gk+t+ kl+a
  MMETSP1174-20130828|4073_1 339 YAAFTVNSKYFVPWLTTVLVASWMVYGGSSVIDGNILLSTYLSTITIFRLAGGEFEKSYQLQLRITSAYASIAQVTQYLNLPIDVPTRRvfsrkrrafgrqmrQ---------EtraslaggklsydptllavDRL--PIKMVNVSFSYKTADstrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLA 520
                 445555556666788999999999************************************************************99888777666554432221.........13345667778889766644444..699********987633323579******************************98 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.16
   TIGR03796 619 GqrqRleiARaLvknPsiLilDEatsaLDaetEkaid 655
                  +rq +++ Ra   nP ++i+    + L+ +  k   
  MMETSP1174-20130828|4073_1 614 ADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCL 650
                 68*******************9988877776666555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.4e-09   1.5e-07      16     179 ..     491     661 ..     477     700 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.4e-09
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlf..ahltvrqniglGlk..pglklnavqkekvedvarqvGiadyl.e..rlpeels..G.....Gqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekk 179
                 ++ l+  +G+ v + G +G Gk+t+l+l+a  ++p++ +    ++  + ++p+ r v +  qen l   +h t+ +n++ G+k  p++  +a++ e+ + + +++G+ad++ e  + p+ l   G       rq + l r ++ +  ++++ +p + l++k  +  la++++ +d++ 
  MMETSP1174-20130828|4073_1 491 NMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPA----QETLVFTPPHLRCVQV--QENPLVlgPHETILENMTYGIKksPSIDWAALE-ERSRIILKRLGMADHImEsfKTPGFLGvnGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRG 661
                 56788889***************************9986....5678899*****9986..777654339************855777777775.6678899*****99762433567766321222222689***********999**************99999999999988874 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.9e-09   2.1e-07       3     138 ..     506     648 ..     504     672 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.9e-09
   TIGR01187   3 GpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmr.kvpkaeikervkeaLelvqleefakr..k.p..sqlsG.....GqrqrvalaravvkkPkiLLlDeplsaLDkkLrdq 138
                 G++G Gk+t+L+lla    +        +e ++  p+++r v+v      L Ph t+ en+ +g+k    ++ a ++er + +L+   + +      k p    + G       rq + l ra   +P+++++  p + L++k  + 
  MMETSP1174-20130828|4073_1 506 GAAGGGKATVLKLLADAVFPTDP----AQETLVFTPPHLRCVQVQENPLVLGPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMADHIMEsfKtPgfLGVNGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKL 648
                 99*************98877665....5789999*******************************97636888999999988888877766433201212112223322222789*********************99998875554 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.3e-07   1.4e-05       2     186 ..     467     658 ..     466     681 .. 0.66

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.3e-07
   TIGR00960   2 ikfeqvskaykgaa.....elaldnvtvkiekGelvflvGhsGaGkstllklilgiekps...aGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalrii.GvkgreieervsaalekvGlkdkaka...lP.......vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnr 186
                 ik+ +vs +yk+a      e  l n++++ ++G+lv + G +G Gk+t+lkl+  +  p+   +  + ++  +l  ++ +e p++               + t+++n+   ++    +   ++eer ++ l+++G+ d+  +    P       v ++  ++q +++ ra++ +P++++   P++ l++++++  l +++e+  
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTADstrnpESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTdpaQETLVFTPPHLRCVQVQENPLVLG------------PHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMADHIMEsfkTPgflgvngVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVD 658
                 6777888888865411222458*******************************9997766111445555555555555555555443............355566666555544313344455566666666666655433211133111111156778899********************************9999998743 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00013     0.015      14      50 ..     485     521 ..     467     533 .. 0.85
   2 !   13.6   0.0   6.3e-05     0.007     150     197 ..     615     662 ..     585     664 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00013
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinr 50 
                  +++l n+ le+ +G+lv + G +G Gk+t+l+ +  
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLAD 521
                 56799****************************9876 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.3e-05
   TIGR02315 150 qqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgi 197
                 ++q + + Ra++ +p++i+   P a L++k++k  + ++++   ++g+
  MMETSP1174-20130828|4073_1 615 DRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGV 662
                 6899*************************************9998886 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   9.8e-09   1.1e-06     479     650 ..     467     643 ..     461     682 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 9.8e-09
   TIGR00958 479 veFqdVsFsYP....srpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfs..gsvreNiaYGltktedeevtaaa.......kaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa 650
                 ++  +VsFsY     +r  + +l ++++    G+ v + G  G+GK tv  ll     Pt           + +     h + + V+  P++ +   ++ eN++YG++k ++ +  a         k+ +  d i+e  k+    +g +G  ++   +q i + RA + +P ++i+    + L  
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKtadsTRNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPA-------QETLVFTPPHLRCVQVQENPLVLGphETILENMTYGIKKSPSIDWAALEersriilKRLGMADHIMESFKT-PGFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNE 643
                 77889*****72222578889***********************************9999743.......23334455577788899***99864479**********998655544440001111455667777776554.3469*****************************9877666655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.4e-06   0.00094      13      55 ..     485     527 ..     475     545 .. 0.87
   2 !    7.4   0.0    0.0044      0.49     141     187 ..     614     660 ..     588     669 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.4e-06
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapda 55 
                    i+ ++ +++P+G+l  + G  G Gk+t+l+lla ++ p++
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTD 527
                 56799999****************************9988764 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0044
   TIGR03873 141 GerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaeg 187
                  +rq ++l ra+  +P+++++  P+  l+ +     la++re ++++
  MMETSP1174-20130828|4073_1 614 ADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNR 660
                 689************************99776666899999998776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   6.2e-08   6.9e-06      15     177 ..     488     657 ..     481     664 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 6.2e-08
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGl...ekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir.kkdkakikakveellelvqle.klgdry..ps.......qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklh 177
                 +l ++ le ++G+lv + G +G Gk+t+l+++a      +p + +++++      v+v++           l +h t+ +n+++G++    +d a+  ++   +l+ ++++ ++ +++  p         ++  +rq + l ra+ ++p+++++ +p + l+ k  k   a +r++ 
  MMETSP1174-20130828|4073_1 488 ILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAvfpTDPAQETLVFTPPHLRCVQVQEN-------PLVLGPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMAdHIMESFktPGflgvngvCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFV 657
                 688999***************************8722234555666666666655555554.......456889***********98775667777788887788777764245555522441111111445679************************999998887777777765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.1e-08   6.8e-06      21     174 ..     497     653 ..     483     662 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.1e-08
   TIGR02142  21 pgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseek...vielLgi.ehLle..RlpgkLs..G.....GekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyL 174
                 p   ++ + G++G Gk+++++l+a  + p++             +  +++pp+ R v +      L pH ++ en++YG+k++ + +  + ee+   +++ Lg+ +h++e  ++pg L   G      ++q + +gRA L +Pe+++m  P a L+ek+ k  l  +
  MMETSP1174-20130828|4073_1 497 PQGKLVEMRGAAGGGKATVLKLLADAVFPTDPA----------QETLVFTPPHLRCVQVQENPLVLGPHETILENMTYGIKKSPSIDWAALEERsriILKRLGMaDHIMEsfKTPGFLGvnGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMM 653
                 555666777788888888888877766665432..........2345899*****999877777889**************998766554443333377888874688874445665532122222279************************99999877666655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.9       1.7   1.9e+02      81     239 ..     171     344 ..      91     389 .. 0.55
   2 !   21.4   0.0   1.5e-07   1.7e-05     332     521 ..     467     661 ..     461     664 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.7
   TIGR02203  81 kvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretlt.vigllivllyl.sWqlt............livvvllPvl..allvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasass 239
                 kv   + ++l   l++ +l+  +a   k  + +++++++ d+  +vs+a  v + lv  +++ ++ l+  +l l s + +            +  ++ lPv   a+l  ++sk +   ++ + ++ ++l   v  ++ +y+ v  ++ +  e ++++   n   + ++  a  + 
  MMETSP1174-20130828|4073_1 171 KVGGGLRKHLQILLLKMFLNYDEASRSKVAVEKVVMAMVRDVVDAVSEAYIVSIDLVFGSIVkLVLLITSMLVLqSISSSdgsiepsnvvppISAILCLPVFifAFLKVRASKGFDLRQH-QFDAENNLVDHVIRTVLNYQLVADYDRRTFEVEKYQGFINAFNKASVAYAAFTV 344
                 555555555666666666666666666666666777776666666655555544444444431222222233221111111111111111112235556654114444555555544444.444445555555567778888888888888888888777777776666655555 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.5e-07
   TIGR02203 332 vefrnvtfrypgddr.....ealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgel..eevdeaeveealaaa.ylkdlvdklpeGldte..vGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRt 521
                 +++ nv+f y+ +d      ++l+++ l+  +G+ v + G +G Gk+t+++ll+  + p++       ++   ++  +LR    +    v+   +ti en++Yg +   ++d a +ee  +       + d++ e ++t+  +G ng+ +    Rq + + Ra+l +  ++i+    + L++   +l  a + ++ ++R 
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTADStrnpeSILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPA-----QETLVFTPPHLRCVQVQENPLVLGPHETILENMTYGIKksPSIDWAALEERSRIIlKRLGMADHIMESFKTPgfLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRG 661
                 6778999999887742222268*******************************9877666432.....222223333344322223334555689*********873346888888876665415668999999999997779************************999999887666666555666666666777665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.6e-08   6.2e-06      17     168 ..     486     644 ..     471     661 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.6e-08
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknk.klkreevaerveelLelvglsgs...eekyPgqls..G.....GqqqrvaLaralalsPglLLLDePlsaLDak 168
                  ++l+++ l+  +g lv + G +G Gk+t+L+++a    ++       ++ +  +pp+ r   +     +L P  t+ en++yG+k++  ++ +  +er + +L+ +g+ +    + k Pg l   G       +q + L+ra+ + P+++++  P + L+ k
  MMETSP1174-20130828|4073_1 486 ESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDP----AQETLVFTPPHLRCVQVQENPLVLGPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMADHimeSFKTPGFLGvnGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEK 644
                 57899******************************88777764....46788999******9999999*****************9763678999999999999999998752225699*98742232222257999*******************8777655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     2e-07   2.2e-05      11     159 ..     491     640 ..     486     647 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2e-07
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell.kideqerkekalealklvdl.eeyedry..Pdel..sG.....GmqqrvGlaralaaePdlllmdeafsa 159
                 ++ le  +G ++ + G +G Gk+t+++ll   + Pt        ++     + +lr v+ +   +      l Ph til+n+++g++    id    +e+++  lk +++ ++ ++++  P  l   G       +q + l ra+ ++P++++m  + + 
  MMETSP1174-20130828|4073_1 491 NMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDP-----AQETLVFTPPHLRCVQVQENPL-----VLGPHETILENMTYGIKKSpSIDWAALEERSRIILKRLGMaDHIMESFktPGFLgvNGvcitrADRQLINLGRAFLMNPEMIIMHKPAAL 640
                 67899999***************************986.....46777789999*8777666555.....578************986537889999999**********5555666532544421232222257999****************988655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7      0.74        82     219     273 ..     193     248 ..     184     255 .. 0.68
   2 !   20.5   0.0     3e-07   3.4e-05     337     517 ..     466     651 ..     454     665 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.74
   TIGR02204 219 ersrfdaavekayeaa.rkrikaralliavvivlvfgavvlvlWvGardvlagkls 273
                 e+sr ++avek++ a  r  + a +    v+i lvfg++v ++ + ++ ++ +++s
  MMETSP1174-20130828|4073_1 193 EASRSKVAVEKVVMAMvRDVVDAVSEAYIVSIDLVFGSIVKLVLLITSMLVLQSIS 248
                 556777889997665515556667777788899*****997655444444444454 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 3e-07
   TIGR02204 337 eiefeevkfayPa....rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalf..aasvleniryGrpdasdeeveaaakaaead......efisklpeGydt..llGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqq 517
                  i++ +v+f+y +    r  +  l+++ l+  +G+ v + G +G Gk+t+l+ll     P++ a     ++   + p +lr     v+ ++ ++   + +len+ yG  ++ +  +  aa + ++       ++  ++ e ++t  +lG +gv ++   +q i + ra l +  ++++   ++ L+ +  +l   
  MMETSP1174-20130828|4073_1 466 PIKMVNVSFSYKTadstRNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPA-----QETLVFTPPHLRC--VQVQENPLVLgpHETILENMTYGIKKSPS--IDWAALEERSRiilkrlGMADHIMESFKTpgFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLA 651
                 57888999999642222667789*******************************9887777653.....4555677777775..45777777763346789******877654..33444443333001111556667789998446**************************9999988776666555555444 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   7.5e-05    0.0083      20      54 ..     485     519 ..     465     531 .. 0.78
   2 !    7.1   0.0    0.0064       0.7     154     199 ..     615     660 ..     585     667 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.5e-05
   TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllksl 54 
                   ++l+++ le  +G+lv + G++G Gk+t+lk l
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLL 519
                 456899***************************87 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0064
   TIGR02324 154 ekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakarg 199
                 ++q +n+ ra++++  ++++  P a L++++ k  + +++e   ++
  MMETSP1174-20130828|4073_1 615 DRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNR 660
                 6899*********77788999***************9999976554 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.3   9.2e+02      40      67 ..      82     109 ..      65     111 .. 0.78
   2 !    6.4   0.0    0.0091         1      14      46 ..     487     519 ..     477     524 .. 0.90
   3 !   13.4   0.0   6.5e-05    0.0072      98     197 ..     552     661 ..     543     667 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 8.3
   TIGR03005  40 stilrilmtletideGsikvegeqlyhm 67 
                  t l++  t+  +++Gsik+   + yh 
  MMETSP1174-20130828|4073_1  82 MTFLKMCWTVPVVKQGSIKMMLAHQYHN 109
                 5889999999999999999987777775 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0091
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilril 46 
                 ++l ++ le  +G+ v + G +G Gk+t+l++l
  MMETSP1174-20130828|4073_1 487 SILSNMALEFPQGKLVEMRGAAGGGKATVLKLL 519
                 578999999**********************98 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 6.5e-05
   TIGR03005  98 lfphktvldnvteapvlvkGvaraeaekravelldmvGladkad.al..paql.......sGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetd 197
                 l ph+t+l+n+t    +   +  a+ e+r+  +l+ +G+ad    ++  p  l       +   +q + + ra+ ++p ++++ ++++ l+ +  +  l+++r++  ++ 
  MMETSP1174-20130828|4073_1 552 LGPHETILENMTYGIKKSPSIDWAALEERSRIILKRLGMADHIMeSFktPGFLgvngvciTRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRG 661
                 77***************************************86413322544421111115578999************************9999999999999877665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.1e-06   0.00046       6     201 ..     470     661 ..     465     664 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.1e-06
   TIGR02769   6 sdvshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGle...kPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevld..klPrq..lsG.....GqlqriniaralavePklivldeavsnldlvlqasilellkklkqefG 201
                  +vs  y+t      ++ +++l+n+ l+  +G+ v + G +G Gk+t+ +ll        Pa+ ++ f    l            r vq+  q+ +  + p++++ e ++  +++  s+d ++ ++r   +l+ +++ +++++  k P    + G        q in+ ra+ ++P++i++    + l+       l++++++ ++ G
  MMETSP1174-20130828|4073_1 470 VNVSFSYKTAD--STRNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVfptDPAQETLVFTPPHL------------RCVQV--QENPLVLGPHETILENMTYGIKKSPSIDWAALEERSRIILKRLGMADHIMEsfKTPGFlgVNGvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRG 661
                 45666666654..4567789********************************876511145555555554433............45665..9999999***************************************99998445665411345111113457799*************9999888887777777888887766665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00016     0.018       6      45 ..     487     526 ..     483     532 .. 0.90
   2 !    6.6   0.0    0.0096       1.1     129     176 ..     612     659 ..     593     665 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00016
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPk 45 
                 ++l+++ l++ +g+ + + Ga G Gk+t+l+ l+  + P+
  MMETSP1174-20130828|4073_1 487 SILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPT 526
                 5899*****************************9888776 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0096
   TIGR01166 129 sgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree 176
                 +  +++ + +  a  ++p+++++  P+a l+ + a+  l+++r+++++
  MMETSP1174-20130828|4073_1 612 TRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDN 659
                 56677788888999*******************999999999987764 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.1e-06   0.00079       8      50 ..     481     523 ..     475     537 .. 0.90
   2 ?    1.4   0.0      0.43        47     134     180 ..     617     663 ..     606     678 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.1e-06
   TIGR01189   8 veRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLl 50 
                  +R+ + +l+++ +e+  G+++ ++G  G GK+t+L++la  +
  MMETSP1174-20130828|4073_1 481 STRNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAV 523
                 579999*********************************9655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.43
   TIGR01189 134 rRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGiv 180
                 + + l+r +l +  + i+  P + l+++  +l  +++++ +++ G+ 
  MMETSP1174-20130828|4073_1 617 QLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVL 663
                 568899**********************************9999975 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.9       2.3   2.6e+02      12     116 ..     226     334 ..     217     400 .. 0.58
   2 !    6.0   0.0    0.0068      0.76     321     368 ..     476     523 ..     458     529 .. 0.78
   3 !   12.0   0.0    0.0001     0.011     448     490 ..     604     646 ..     594     702 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 2.3
   TIGR01842  12 alfsaviniLlLvsslymlqvyDr....vlaskslstLlvltvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatlerkkkeslqalrDld.qlrqFlt 116
                  +f  ++ ++lL++s+ +lq        + +s+ ++ + ++  l v+++++l  + a + + l +   + +++l +++ +++++++l +   + +  ++  +  +  F  
  MMETSP1174-20130828|4073_1 226 LVFGSIVKLVLLITSMLVLQSISSsdgsIEPSNVVPPISAILCLPVFIFAFLK-VRASKGFDLRQHQFDAENNLVDHVIRTVLNYQLVADYDRRTFEVEKYQgFINAFNK 334
                 46788888999999999888654301114444444444444444444444443.45566667777777777778888888888888854443444444333312344433 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0068
   TIGR01842 321 nvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvw 368
                   ++   ++ +++l ++ ++  +G+ + + G++g Gk+++ +ll  ++
  MMETSP1174-20130828|4073_1 476 YKTADSTRNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAV 523
                 4444455566699*****************************997665 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0001
   TIGR01842 448 igegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGe 490
                 +g +G  +    rq i L Ra+  +P ++++  P a L+e+  
  MMETSP1174-20130828|4073_1 604 LGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQA 646
                 78899999999************************99987643 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06   0.00029     452     499 ..     467     519 ..     456     531 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.6e-06
   TIGR03797 452 ievdrvtFrYek.....dgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 i++ +v+F Y++     + + +L++++l+  +G+ v + Ga G GK t+l+lL
  MMETSP1174-20130828|4073_1 467 IKMVNVSFSYKTadstrNPESILSNMALEFPQGKLVEMRGAAGGGKATVLKLL 519
                 8899******85222214568*******************************9 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06   0.00027      16     187 ..     488     656 ..     477     664 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.5e-06
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvls.gvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelklda..snvtrpvsdlGl.......Gqqqlveiakalnkqvrllildepsaslteketeilldiirdl 187
                  l n++l+   G++v + G  G Gk+t++k+l+ +v+p+   +  ++f   +l+  ++++          + l+l ++ ++len+  G     k   +d +a+  r++ +l++l + +  +++ +  + lG          +ql+++ +a+  +  ++i+ +p+a l ek+ ++ l ++r++
  MMETSP1174-20130828|4073_1 488 ILSNMALEFPQGKLVEMRGAAGGGKATVLKLLAdAVFPTDPAQETLVFTPPHLRCVQVQE----------NPLVLGPHETILENMTYGI--K-KSPSIDWAALEERSRIILKRLGMADhiMESFKTPGFLGVngvcitrADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREF 656
                 58899***************************868****************999988876..........4699999*******99884..3.4447999***********9998865112333332333321111122579**********************************999985 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.1e-05    0.0012       1     145 [.     489     641 ..     489     664 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-05
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysll..pwltvrenialavdav..lrdlskserreiveehielvglreaadkrpeqls..ggm.....kqrvaiaralsirpklllldepfgal 145
                 l ++ le  +g+++ + g +g gk+t+l l+a    pt+ a       +  p   r v  q+  l+  p  t+ en++  +++      ++ +er +i+ +++ + +    + k+p+ l   g       +q + + ra+ + p+++++ +p   l
  MMETSP1174-20130828|4073_1 489 LSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPAQ---ETLVFTPPHLRCVQVQENPLVlgPHETILENMTYGIKKSpsIDWAALEERSRIILKRLGMADHIMESFKTPGFLGvnGVCitradRQLINLGRAFLMNPEMIIMHKPAALL 641
                 5688999*******************************9874...45677888889998887665445************9986214456789999**********999999999986532132222222788999999999****9999997655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0023      0.25      14      49 ..     486     521 ..     467     535 .. 0.87
   2 ?    5.3   0.0     0.023       2.6     136     184 ..     614     662 ..     541     667 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0023
   TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltr 49 
                 +++l++++l+ ++g++v + G  G Gk+t+++ll+ 
  MMETSP1174-20130828|4073_1 486 ESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLAD 521
                 578999***************************975 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.023
   TIGR03864 136 GhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreegl 184
                  +r+ +++ ra l +P+++++  +++ L+ +  +  ++++re v ++g+
  MMETSP1174-20130828|4073_1 614 ADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGV 662
                 4577799**********************99999999999999988876 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0002     0.022      17      93 ..     485     566 ..     468     585 .. 0.61
   2 ?   -1.6   0.0       1.5   1.6e+02     166     194 ..     615     643 ..     609     657 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0002
   TIGR03719  17 kkeilkdislsffpgakiGvlGlnGaGkstllkimaGv....dkefeGealaaegikvGyleqeP.kldeektvrenveegv 93 
                   +il ++ l f +g  + + G  G Gk+t+lk++a      d   e  + + + +++  ++ +P  l +++t+ en++ g+
  MMETSP1174-20130828|4073_1 485 PESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAvfptDPAQETLVFTPPHLRCVQVQENPlVLGPHETILENMTYGI 566
                 3567777777777777777777777777777777774212112223333334445555555555522455555555555555 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   TIGR03719 166 ekrrvalcrlllekPdlllldePtnhlda 194
                 +++ + l r +l +P+++++  P+  l+ 
  MMETSP1174-20130828|4073_1 615 DRQLINLGRAFLMNPEMIIMHKPAALLNE 643
                 67778999***************987765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0031      0.34      13      48 ..     486     521 ..     474     531 .. 0.88
   2 ?    2.7   0.0      0.15        16     136     159 ..     615     638 ..     601     644 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0031
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvg 48 
                  ++l+++ le ++g++v + G  g Gk+t+lk l  
  MMETSP1174-20130828|4073_1 486 ESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLAD 521
                 579*****************************8865 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.15
   TIGR03410 136 qqqqlaiaRaLvtePklllLDePt 159
                  +q + ++Ra +++P+++++  P+
  MMETSP1174-20130828|4073_1 615 DRQLINLGRAFLMNPEMIIMHKPA 638
                 588999**************9996 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00053     0.058      13      48 ..     486     521 ..     476     527 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00053
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                 ++iL+++ le  +G+++ + G+ G Gk+t+ k la 
  MMETSP1174-20130828|4073_1 486 ESILSNMALEFPQGKLVEMRGAAGGGKATVLKLLAD 521
                 68*****************************99975 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0037      0.41      18     196 ..     489     663 ..     470     666 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0037
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeG...svlfkgkdltklkeaeiarlGigRkfqkpsvf.eeltvlenlelalkadksv.lallfarlsk..eekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvv 196
                 l++++l+  +g+l  + G+ G Gk+t+l +++  + p++    +++f+  +l+ ++              +p v+  + t+len++  +k++ s+ +a+l +r +   ++    ++++e  +       +   ++  ++q +++g  ++ +p+++++  P+a + ++  +    +++e  ++r v+
  MMETSP1174-20130828|4073_1 489 LSNMALEFPQGKLVEMRGAAGGGKATVLKLLADAVFPTDPaqeTLVFTPPHLRCVQV-----------QENPLVLgPHETILENMTYGIKKSPSIdWAALEERSRIilKRLGMADHIMESFKTPGFLGVNGVCITRADRQLINLGRAFLMNPEMIIMHKPAALLNEKQAKLCLAMMREFVDNRGVL 663
                 677888888888888888888888888888887776654300033333333322222...........2456665246788999999888888774566655444311333345788888888888888999999999999999999999999999999999999999888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        37  (0.00901999); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.05u 0.19s 00:00:01.24 Elapsed: 00:00:01.04
# Mc/sec: 906.16
//
Query:       MMETSP1174-20130828|4077_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1491.73
//
Query:       MMETSP1174-20130828|4078_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1074.24
//
Query:       MMETSP1174-20130828|4079_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 539.27
//
Query:       MMETSP1174-20130828|4080_1  [L=1231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.22s 00:00:00.96 Elapsed: 00:00:00.56
# Mc/sec: 2901.40
//
Query:       MMETSP1174-20130828|4081_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.2   2.6      0.002   15.8   1.8    1.2  1  TIGR00922 nusG: transcription termination/antitermination factor NusG
     0.0092   14.0   2.0      0.015   13.3   0.2    1.8  2  TIGR02514 type_III_yscP: type III secretion system needle length determinant
  ------ inclusion threshold ------
      0.059   10.0   3.7      0.058   10.0   2.5    1.1  1  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase
       0.09    9.1   8.3      0.098    9.0   5.8    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
       0.29    8.7   6.0        1.2    6.7   4.2    1.7  1  TIGR01009 rpsC_bact: ribosomal protein S3
       0.53    6.0   4.3       0.59    5.8   3.0    1.0  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
        2.8    4.6  11.8        3.5    4.3   8.2    1.3  1  TIGR00414 serS: serine--tRNA ligase
        3.6    5.2   6.8        4.3    4.9   4.7    1.0  1  TIGR02797 exbB: tonB-system energizer ExbB


Domain annotation for each model (and alignments):
>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.8   3.8e-06     0.002      76     148 ..      16      92 ..       6     100 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.8e-06
   TIGR00922  76 kktpkVvgfvgsgkkpkalkeeeveni.lnklkekkekpkskvefekgeq...vrvieGpFanftgtveevdkekkk 148
                 ++++kV + +++  k+ ++++e+ + + ++++k+ +ek + k++ ek ++   v+++eG + ++t +vee++k+ ++
  MMETSP1174-20130828|4081_1  16 ENLQKVNNELKKRIKEINMSRENEQALnAAAMKSLEEKLVAKMTVEKEDHtanVKIMEGKYGELTIKVEELEKDLQR 92 
                 57888888888887777666644444312334444578888888888774444******************998655 PP

>> TIGR02514  type_III_yscP: type III secretion system needle length determinant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.12        60      13      43 ..       9      39 ..       2      44 .. 0.63
   2 !   13.3   0.2   2.9e-05     0.015      14      68 ..      39      91 ..      29      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.12
   TIGR02514 13 aeqaeasedleqLiskLvvkievelpsasre 43
                ++q+ ++e+l++  ++L ++i+    s+++e
  MMETSP1174-20130828|4081_1  9 KKQSAKNENLQKVNNELKKRIKEINMSRENE 39
                4467777778888888887776444444555 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.9e-05
   TIGR02514 14 eqaeasedleqLiskLvvkievelpsasreaelrllLpqLggleiriaresgkls 68
                eqa +++ +++L +kLv k+ ve     ++a+++++ ++ g+l+i++++ +  l+
  MMETSP1174-20130828|4081_1 39 EQALNAAAMKSLEEKLVAKMTVEKED--HTANVKIMEGKYGELTIKVEELEKDLQ 91
                478889999*************9877..8******************99877776 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   0.00011     0.058       9      63 ..       7      63 ..       1      88 [. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR00407  9 aqlstaeknealskiadeLkaeaelil..aanakdiaaakenGladalldrLlLtee 63
                +++++  kne l+k+++eLk+++++i    +n++ ++aa  + l ++l+ ++++++e
  MMETSP1174-20130828|4081_1  7 TSKKQSAKNENLQKVNNELKKRIKEINmsRENEQALNAAAMKSLEEKLVAKMTVEKE 63
                5677889****************998633799******************9999886 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.8   0.00019     0.098     252     335 ..       9      93 ..       2     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00019
   TIGR03719 252 krleqeekeeaarkkalkkeleWvrsspkarqakskarlaryee.l.aseesekkeetaeivippgerlGdkvievenlskafgdk 335
                 k+ + ++++ ++ + +lkk ++ +++s +  qa + a +++ ee l a+ + ek+++ta++ i  g + G+  i+ve+l+k  + k
  MMETSP1174-20130828|4081_1   9 KKQSAKNENLQKVNNELKKRIKEINMSRENEQALNAAAMKSLEEkLvAKMTVEKEDHTANVKIMEG-KYGELTIKVEELEKDLQRK 93 
                 33344444445667889999999******************9873435667788888999999988.58************98876 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.2    0.0023       1.2      47      97 ..      29      96 ..       6     100 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0023
   TIGR01009 47 lk.....................kasiseveiereadkvevtihtarPglvigkkgkeieklkkelkklvgs 97
                +k                     ++ ++++++e+e ++ +v+i  ++ g    +   ++e+l+k+l+++ ++
  MMETSP1174-20130828|4081_1 29 IKeinmsreneqalnaaamksleEKLVAKMTVEKEDHTANVKIMEGKYG----ELTIKVEELEKDLQRKCEE 96
                43444444444444444444444999******************99988....5566899999999998874 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.0    0.0011      0.59     538     611 ..       9      82 ..       4      99 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0011
   TIGR03480 538 edQeeKLaliadlalvlgptlavaeekpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarllak 611
                 ++Q +K + +++++  l+  ++  + +++++++ +aaa+++l +kl +++  e++ +++++k ++++  +l  k
  MMETSP1174-20130828|4081_1   9 KKQSAKNENLQKVNNELKKRIKEINMSRENEQALNAAAMKSLEEKLVAKMTVEKEDHTANVKIMEGKYGELTIK 82 
                 57888888888888888888888888888888888888888888888888777777777777777777777422 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   8.2    0.0069       3.5      37     101 ..       6      71 ..       1     101 [] 0.43

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0069
   TIGR00414  37 dklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleelea.elkeleeelee 101
                 +  kk+  k e+lqk +nel+k+i++ + +++++ +   + +k+l+e+l ++ + e ++  ++++ 
  MMETSP1174-20130828|4081_1   6 ATSKKQSAKNENLQKVNNELKKRIKEINMSRENEQALNAAAMKSLEEKLVAKMTvEKEDHTANVKI 71 
                 445566666666666666666666663333322212123445555555533222022222222222 PP

>> TIGR02797  exbB: tonB-system energizer ExbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.7    0.0084       4.3      33     114 ..      13      93 ..       9      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0084
   TIGR02797  33 aksvelarakarlkralkaleeakslaeaeealekkggvaaalvkaaeeelklseaelaeeeGikervasrlerieaaagrr 114
                 ak+ +l++ ++ lk+++k+++ +++ ++a +a++  +++ ++lv++ + e +  +a+ +  eG    +++++e++e+   r+
  MMETSP1174-20130828|4081_1  13 AKNENLQKVNNELKKRIKEINMSRENEQALNAAA-MKSLEEKLVAKMTVEKEDHTANVKIMEGKYGELTIKVEELEKDLQRK 93 
                 788899999****************999988765.56899999999999999999899999999999999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       815  (0.198684); expected 82.0 (0.02)
Passed bias filter:                      376  (0.0916626); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 444.36
//
Query:       MMETSP1174-20130828|4083_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1013.34
//
Query:       MMETSP1174-20130828|4084_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-28   96.4   0.1    4.1e-28   96.0   0.1    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.7e-13   48.2   1.0    1.1e-10   38.9   0.3    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.4e-09   35.1   1.5    6.3e-09   32.9   0.4    1.9  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      0.002   15.2   0.1       0.37    7.7   0.0    2.1  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.1     4e-31   4.1e-28     333     502 ..       4     196 ..       2     202 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 4e-31
   TIGR01642 333 atGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatieken................................sdvlvtllakalsqsilq......iGekptkvvqLtnlvlaedlld..deeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafyse 502
                 a G+sKG   +e+kd+ vt  A ++LnG+ lg+ k+ v+r       + ++ +n                                s+++v            +           + v+ L n+++++ l +  +ee e++ edv++e +++G +k i+iPr         G GK+F+e++dv +a kAr+ ++ r F ++ v a fy+ 
  MMETSP1174-20130828|4084_1   4 ASGQSKGTVVFEFKDPEVTTGAFESLNGVALGEIKMLVQRVPPEMAATLLKPINdnsgdepsegqggrsggidmatsdvqsgavtgSNTVV------------EeedeneSLTSESVVIVLSNMITEDVLKNnmVEELEDVEEDVRDESDRFGCVKAIKIPRK-----DEYGAGKIFVEFSDVGGAAKARSVMDNRSFCGKRVKARFYPF 196
                 78**********************************************99999999************99987766555443333222222............23333332334678999******9999753379**************************9.....568*************************************85 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0001      0.11     256     349 ..       4      92 ..       2     105 .. 0.69
   2 !   38.9   0.3   1.1e-13   1.1e-10     396     493 ..      93     199 ..      75     205 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0001
   TIGR01622 256 etGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgsgala 349
                  +G+skG    +F+d e +  A e lNG+ l   ++ v   + v +e +a+l++  +d+  ++   g+++++ +  +    ++ +  + +g+ +
  MMETSP1174-20130828|4084_1   4 ASGQSKGTVVFEFKDPEVTTGAFESLNGVALGEIKMLV---QRVPPEMAATLLKPINDNSGDEPSEGQGGRSGGIDMATSDVQSG--AVTGSNT 92 
                 579*************************8886544444...55899999988888888645555555555555544444444444..4444443 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 1.1e-13
   TIGR01622 396 fvpse...vnl..aseclvLsNmFdp..ateeeenfdkeikdDvkeEcskkggvvhiyv..dkknsaGkvYlkfdsveaalaavkalngRyFagklitAafvvkdvy 493
                  v+ e     l   s  +vLsNm      +++ ++  +++++Dv++E+++ g v  i +   ++  aGk+++ f++v +a++a   ++ R F gk ++A f +  v+
  MMETSP1174-20130828|4084_1  93 VVEEEdenESLtsESVVIVLSNMITEdvLKNNMVEELEDVEEDVRDESDRFGCVKAIKIprKDEYGAGKIFVEFSDVGGAAKARSVMDNRSFCGKRVKARFYPFYVF 199
                 3333332222300344567888887633344555667899************887666511566689********************************99887666 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.036        37     145     184 ..       7      48 ..       2      63 .. 0.73
   2 !   32.9   0.4   6.1e-12   6.3e-09     507     594 ..     104     192 ..     102     201 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.036
   TIGR01645 145 khkgfafve.evPeaallaleqmngallGGrnlkvgr.Psnl 184
                 + kg    e   Pe +  a e++ng+ lG   + v+r P ++
  MMETSP1174-20130828|4084_1   7 QSKGTVVFEfKDPEVTTGAFESLNGVALGEIKMLVQRvPPEM 48 
                 556655555577999999**********99888887425555 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 6.1e-12
   TIGR01645 507 knesrvivlrnmvtPkdid.......etlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                 + es vivl nm+t + +        e++e+++r+e  +fg v+ + i  + +          kifvefs+   + +a+  +d r f G++v+a 
  MMETSP1174-20130828|4084_1 104 TSESVVIVLSNMITEDVLKnnmveelEDVEEDVRDESDRFGCVKAIKIPRKDEY------GAGKIFVEFSDVGGAAKARSVMDNRSFCGKRVKAR 192
                 5799********99654332222223467899***********99877654443......367******************************96 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00036      0.37     124     163 ..       4      43 ..       1      51 [. 0.91
   2 !    5.6   0.1    0.0015       1.6     299     352 ..     133     185 ..     113     202 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00036
   TIGR01628 124 eeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgk 163
                  +G+Skg    +f+d e  + A e lNgv+l++ ++ v++
  MMETSP1174-20130828|4084_1   4 ASGQSKGTVVFEFKDPEVTTGAFESLNGVALGEIKMLVQR 43 
                 579*****************************99999876 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0015
   TIGR01628 299 dekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkiln 352
                 +e++r++ ++fG +++ k+ +++ e   g  FV fs+   A kA + ++ + + 
  MMETSP1174-20130828|4084_1 133 EEDVRDESDRFGCVKAIKIPRKD-EYGAGKIFVEFSDVGGAAKARSVMDNRSFC 185
                 34455555555555555555544.444444455555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|4086_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1501.94
//
Query:       MMETSP1174-20130828|4088_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1231.90
//
Query:       MMETSP1174-20130828|4089_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-11   40.8   0.0    2.8e-09   34.2   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    3.3e-07   27.8   0.0      8e-07   26.5   0.0    1.6  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    2.3e-06   25.1   0.0    3.4e-06   24.5   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    2.2e-05   22.0   0.0    5.6e-05   20.7   0.0    1.6  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0021   15.1   0.0     0.0031   14.6   0.0    1.2  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
     0.0035   14.8   0.0      0.007   13.9   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.014   12.3   0.0       0.02   11.8   0.0    1.1  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.8e-12   2.8e-09      14     134 ..      33     159 ..      23     164 .. 0.83
   2 !    4.6   0.0    0.0051         3     250     277 ..     301     327 ..     279     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 4.8e-12
   TIGR03056  14 gpfdWlvrdeGpaaG.PvllllhGagasshsfrklvpllaarfrvvapdlPGhGftr....atarfrfslkamaedlakllaaedlsPda.viGhsaGaaialrlaldlpvrPravvginaaldnfe 134
                  + +    + G  a   +++++hG  +ss+ +r+++p      r++apdl G G +          r+s+k  ++ ++++l a ++s ++  + hs G+++ ++     p   r +v+++  + +f+
  MMETSP1174-20130828|4089_1  33 LGKQMAYYEAGSGASeETIIFVHGNPTSSYMWRNVMPHCEGLGRLIAPDLIGMGESEklgnVDDADRYSMKEQSRYFSAFLDAVGVSKNVtFVAHSWGGTLTAHWGSRNPTAVRGLVSLEVVYVPFP 159
                 55555555566543337899**********************************875221145678********************9886379**************************99999997 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0051
   TIGR03056 250 tlrevpGlGhlvheedadgvaglildav 277
                 t + v+G Gh+v e+++d v g i ++ 
  MMETSP1174-20130828|4089_1 301 TEVAVKG-GHMVTEDSPDEVGGAIAEWF 327
                 5567888.****************9986 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.4e-09     8e-07       4     108 ..      39     149 ..      36     154 .. 0.85
   2 ?   -2.6   0.0       1.1   6.3e+02     229     250 ..     306     327 ..     297     328 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.4e-09
   TIGR02427   4 yrlegaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlS.dvpegp....ysiedladdvlallDalgiek.aavcGlSlGGliaqaLaarrpdrvealv 108
                 y   g+ a++ +++++    t+  +w++v+++ +   r+++ D  G G+S ++++++    ys+++ ++   a lDa+g++k ++++  S GG ++++ ++r+p  v+ lv
  MMETSP1174-20130828|4089_1  39 YYEAGSGASEETIIFVHGNPTSSYMWRNVMPHCEGLGRLIAPDLIGMGESeKLGNVDdadrYSMKEQSRYFSAFLDAVGVSKnVTFVAHSWGGTLTAHWGSRNPTAVRGLV 149
                 444555668999**************************************634443222249*****************97626899*********************998 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02427 229 eaaHlpnleqpeafaallrdfl 250
                 +++H+ + ++p+++  ++++++
  MMETSP1174-20130828|4089_1 306 KGGHMVTEDSPDEVGGAIAEWF 327
                 4899999999999988888876 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.8e-09   3.4e-06       2     100 ..      48     149 ..      47     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.8e-09
   TIGR03695   2 kpvlvlLHGflgskedwqalieeleekfsvlalDLpgHGksk...slkekeakdfeeaaqellkellekl.kiekviLvGYSlGGRialalaleaperlegli 100
                 +++++++HG   s+  w+++++++e   +++a DL g G+s+   + ++ ++++++e++++  +  l+++   ++v+ v  S GG +  +   + p+ ++gl+
  MMETSP1174-20130828|4089_1  48 EETIIFVHGNPTSSYMWRNVMPHCEGLGRLIAPDLIGMGESEklgNVDDADRYSMKEQSRY-FSAFLDAVgVSKNVTFVAHSWGGTLTAHWGSRNPTAVRGLV 149
                 689*********************9999*************83435678899*********.55555666378899********************9999986 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.5e-08   5.6e-05       5     125 ..      28     149 ..      24     164 .. 0.86
   2 ?   -1.9   0.0      0.72   4.2e+02     231     286 ..     273     326 ..     267     328 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9.5e-08
   TIGR01250   5 kiitldggyvlftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd.eklltidrfvdEleevrekLaldk.fyllgqSwGglLaqeYalkyqqhlkgli 125
                 k++++ g+++ + + +    +  ++ +HG P ss + + ++    +   ++i  D +G g+S++  + d  + + +        +  +++++ k +  +++SwGg+L++++  + +  ++gl+
  MMETSP1174-20130828|4089_1  28 KKVAVLGKQMAYYEAGSGASEETIIFVHGNPTSS-YMWRNVMPHCEGLGRLIAPDLIGMGESEKLGNVDdADRYSMKEQSRYFSAFLDAVGVSKnVTFVAHSWGGTLTAHWGSRNPTAVRGLV 149
                 6788889998888888888899*********987.5788888888885578899*********9766555788999999999999999999988899**************999999999987 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.72
   TIGR01250 231 kvPtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                 ++PtL+ + e  +mt e   +++    k   +v  +g+h+   + p+e    ++++
  MMETSP1174-20130828|4089_1 273 ELPTLFLSVEPGTMTAEDRSYIRGW--KNMTEVAVKGGHMVTEDSPDEVGGAIAEW 326
                 6799999999999998887777664..34455666888888777777766666665 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.2e-06    0.0031       8     125 ..      29     150 ..      23     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.2e-06
   TIGR01249   8 ylkvsdvhqlyyeesGnPdGkPvvflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskphaileenttwdlvad...ieklreklkikkWlvf.GGsWGstlalayaqkhPekvtklvl 125
                  + v      yye       + ++f+hG P s    ++   +     r++  d  G G s+   ++++   + +      +  + ++++++k   f   sWG tl+  +  + P  v +lv 
  MMETSP1174-20130828|4089_1  29 KVAVLGKQMAYYEAGSGASEETIIFVHGNPTSSYMWRNVMPHCEGLGRLIAPDLIGMGESEKLGNVDDADRYSMKEQsryFSAFLDAVGVSKNVTFvAHSWGGTLTAHWGSRNPTAVRGLVS 150
                 5566666677898887888899************99999999999*********************999988876652226677788888877666278********************984 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.007       4      96 ..      48     151 ..      45     172 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-05
   TIGR01738   4 vkklvLihGWglnaevfadlveeLsahftlslvDLPGyGdsaelrals......lae...vaeailaq..apakaiwlGWsLGGLvalhlalthpdkvrsLvlv 96 
                  ++++ +hG    + ++++++++ +   +l + DL G G+s++l  ++      ++e      a l++  + ++  ++  s GG + +h   + p  vr+Lv +
  MMETSP1174-20130828|4089_1  48 EETIIFVHGNPTSSYMWRNVMPHCEGLGRLIAPDLIGMGESEKLGNVDdadrysMKEqsrYFSAFLDAvgVSKNVTFVAHSWGGTLTAHWGSRNPTAVRGLVSL 151
                 578999***********************************999877511111144311134566666224678899***********************9975 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.5e-05      0.02     109     159 ..     101     151 ..      84     157 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.5e-05
   TIGR01392 109 tirDlvkaqkalldsLgveklaavvGgSlGGmqalewalsypervkkivvl 159
                 +++++ +   a+ld++gv+k ++ v  S GG  +  w  ++p +v+ +v l
  MMETSP1174-20130828|4089_1 101 SMKEQSRYFSAFLDAVGVSKNVTFVAHSWGGTLTAHWGSRNPTAVRGLVSL 151
                 67788888899***********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1102.11
//
Query:       MMETSP1174-20130828|4090_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2433.34
//
Query:       MMETSP1174-20130828|4094_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 697.07
//
Query:       MMETSP1174-20130828|4095_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 128.52
//
Query:       MMETSP1174-20130828|4096_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.2   0.0      0.017   12.1   0.0    1.0  1  TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein)


Domain annotation for each model (and alignments):
>> TIGR01152  psbD: photosystem II D2 protein (photosystem q(a) protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-06     0.017     251     308 ..       4      62 ..       1      70 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-06
   TIGR01152 251 rfwsqifgv.afsnkrwlhffmlfvpvtglwmsaigvvglalnlraydfvsqeiraaed 308
                  +wsq +gv a++   w + + +    + +w  + gv  +a +l   d+vs+  r + d
  MMETSP1174-20130828|4096_1   4 EIWSQSYGVgAMTSDIWCQSYGVGAMTSEIWRQSYGVGAMASELDVSDVVSELWRRSYD 62 
                 68*******778999************************************98887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.45
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|4098_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 419.97
//
Query:       MMETSP1174-20130828|4099_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|4100_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 678.36
//
Query:       MMETSP1174-20130828|4101_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-77  257.7   0.0    2.6e-77  257.5   0.0    1.0  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    1.7e-24   84.7   0.0    4.1e-23   80.2   0.0    2.0  2  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    2.4e-11   40.7   0.1    8.1e-10   35.7   0.1    2.0  2  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   0.0   1.9e-80   2.6e-77       3     246 ..      63     306 ..      61     307 .. 0.97

  Alignments for each domain:
  == domain 1    score: 257.5 bits;  conditional E-value: 1.9e-80
   TIGR00500   3 lkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipdkkvlkdgDivniDvgvel.dGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeepeilnyakketnvrlkeGmviaiEPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLte 246
                 ++ + ei++l +ag++++++le++ + ++pGv+t+++d ++++ +++ g ++a+++y+gfp+s+C+SvN++++HGip+k+ l+dgDiv+ Dv+v+  +G++gD   ++ vg+v+e+   l+ at +al+ ai ++ +g  + +i++ai++ a+++ f  v +y+GHGiG ++H  p + +  ++ + + l +Gmv++iEPm+ e+ e+ ++++d+Wtv+tkd++ saq+Eh+v+vt +g+ +Lt+
  MMETSP1174-20130828|4101_1  63 VQGDAEIQALERAGSIARRMLEVACSLAQPGVTTDDIDAVVHNRMIEAGVYPAPLNYRGFPKSICASVNNEICHGIPNKRPLEDGDIVKFDVSVYTeEGFFGDNCASICVGEVDERGLELVTATSQALTDAITKCVPGGCLSQIGEAIHSVADAHSFESVTRYCGHGIGSSFHSPPMVFHCRNR-ERLELLPGMVFTIEPMLVEGCEDCTVMSDEWTVVTKDGSRSAQYEHMVAVTPDGPRVLTA 306
                 67789*****************************************************************************************8737*********************************************************************************98765.578999****************************************************96 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0     3e-26   4.1e-23       8     196 ..      72     268 ..      66     277 .. 0.90
   2 ?    2.8   0.0     0.011        16     270     294 ..     281     305 ..     270     306 .. 0.84

  Alignments for each domain:
  == domain 1    score: 80.2 bits;  conditional E-value: 3e-26
   TIGR00501   8 likaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPani..sinevaahftpkagdetvlkdedvvkldlGahv.dGyiadtaitvdlddq...ykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvkerdttkleeGevlaiepfatdGvG 196
                 l +aG i++++ + a    +pG+   ++  +v nr++e G  P      +fP +i  s+n+   h  p+   ++ l+d+d+vk d+ +   +G+  d    + ++++     el+ a+ +al  ai +  ++  +++iG++i+ v +++ ++ ++  +Gh++     h+++ +   ++r+  +l  G+v+ iep+  +G  
  MMETSP1174-20130828|4101_1  72 LERAGSIARRMLEVACSLAQPGVTTDDIDAVVHNRMIEAGVYPaplnyrGFPKSIcaSVNNEICHGIPN---KRPLEDGDIVKFDVSVYTeEGFFGDNCASICVGEVderGLELVTATSQALTDAITKCVPGGCLSQIGEAIHSVADAHSFESVTRYCGHGIGS-SFHSPPMVFHCRNRERLELLPGMVFTIEPMLVEGCE 268
                 4589**************************************9889999***998669*******9997...589*************8736*****9877766555333789*************************************************86.79***************************9988865 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.011
   TIGR00501 270 eksgslvaqfehtilveedgaevvt 294
                  k+gs  aq+eh + v+ dg  v+t
  MMETSP1174-20130828|4101_1 281 TKDGSRSAQYEHMVAVTPDGPRVLT 305
                 578999************9998876 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   5.9e-13   8.1e-10      19     183 ..      68     224 ..      57     232 .. 0.85
   2 !    2.9   0.0    0.0055       7.5     307     336 ..     279     308 ..     262     314 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 5.9e-13
   TIGR00495  19 vvtkykiageiankvlkkvvekcksgakvvdiCe.kGdelikeetakvykkkkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhi.dGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviekvaasydcksveG 183
                  ++  + ag ia+++l++  + +++g+   di     + +i++    vy      ++G     + svnn ++h  P   +++ l++Gd+vk d+ v+  +Gf    +  i +g   +v  r  + ++a+s al  a+    PG    ++ e+i+ va+++  +sv  
  MMETSP1174-20130828|4101_1  68 EIQALERAGSIARRMLEVACSLAQPGVTTDDIDAvVHNRMIEA---GVYPA-PLNYRGFPKSICASVNNEICHGIP---NKRPLEDGDIVKFDVSVYTeEGFFGDNCASICVG---EVDERGLELVTATSQALTDAITKCVPGGCLSQIGEAIHSVADAHSFESVTR 224
                 56777899**********************9954144556654...56766.4458998888999********999...6689*************9846*****99999997...8999999************************************99998875 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0055
   TIGR00495 307 lydkeGeivaqfkftvlllpnGsirltsse 336
                 +  k+G+  aq++  v+++p+G+  lt ++
  MMETSP1174-20130828|4101_1 279 VVTKDGSRSAQYEHMVAVTPDGPRVLTAGQ 308
                 4679********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1023.72
//
Query:       MMETSP1174-20130828|4103_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 663.95
//
Query:       MMETSP1174-20130828|4105_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 936.30
//
Query:       MMETSP1174-20130828|4106_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|4107_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|4109_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|4108_1  [L=936]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.55
# Mc/sec: 2246.21
//
Query:       MMETSP1174-20130828|4115_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    6.2  12.5        0.4    6.0   8.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   8.6   9.8e-05       0.4     966     997 ..      14      43 ..       5      53 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 9.8e-05
   TIGR00927 966 dgeggsdGGdseeeeeeeeeeeeeeeeeeeee 997
                  +e+g+ GGd++ee eeeee  +ee++ +ee+
  MMETSP1174-20130828|4115_1  14 SEEDGGGGGDTQEEGEEEEE--DEEQQTQEED 43 
                 45667777777666655555..4444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|4114_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|4111_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-18   63.8   0.1    4.7e-07   27.3   0.0    3.2  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    3.7e-14   49.3   0.0    4.9e-14   49.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00017   19.0   0.0    0.00041   17.7   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   3.2e-05     0.044     144     250 ..      74     175 ..      66     212 .. 0.85
   2 !   22.0   0.0   1.4e-08   1.9e-05      14      99 ..     215     301 ..     199     314 .. 0.82
   3 !   27.3   0.0   3.4e-10   4.7e-07     138     248 ..     316     423 ..     307     427 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.2e-05
   TIGR03896 144 lilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLqa 250
                 ++++ + ++D++    s    + sag+++i  g+   ++Y+l  G+   ++     +++v +  rG  +Gel+++   +  +a+v a +  vl  ++ + +++ L +
  MMETSP1174-20130828|4111_1  74 FLFTGVSDEDLQETISSMSVLNASAGEAIITQGDGGSTFYVLESGDCYAAVD----GKNVFEYTRGGSFGELALIYNAKR-AASVIATTPAVLWCMEMRTFRQILST 175
                 788899999999999999999************************9987764....68999**************98888.79999999999999998887777654 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.4e-08
   TIGR03896  14 aaettLieeGkaaddLfilldGaitvt..ikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaakl 99 
                  a++ +i+eG + + ++i++ G +  t  ++q++++++ +   l +Ls G+  Gem+l+ + p  a +++    +ll++ ++e+++ l
  MMETSP1174-20130828|4111_1 215 DAGQEIIKEGDSGETFYIIKVGKVKCThlVSQDDGKSV-KETILMNLSDGDYFGEMALILNEPRHANVISLTPVKLLELSQNEFESLL 301
                 57899*****************9876522556666666.5556999***********************9999999999999988765 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 3.4e-10
   TIGR03896 138 pLrkvLlilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakL 248
                  Lr v  il+ l +k+ + + k  + +++  g+ ++ ege+ d++Yi+ +G++ +  + d + + + +++  e +Ge +++  +    a+v a  +++ L+++k+++ + L
  MMETSP1174-20130828|4111_1 316 ILRSV-PILSKLTDKETDRISKKMRVQQFNDGEYIVTEGESGDRFYIINEGNVVVRCNAD-PDNILKELSNQEYFGERALIKDEPR-NANVIAQGSVECLVLEKKDFEKVL 423
                 56666.4799******************************************99998876.7888999*************87666.******************998776 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   3.6e-17   4.9e-14       1     202 [.     481     686 ..     481     718 .. 0.82

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 3.6e-17
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevL..aadGaLpaaetg.....rLml...qvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 +t++  a+k + +++   +++ +    e  +  + +hP i +L  +  ++++ lF   e ++G  l   +  ++dG +p +  g     + m     ++ a+   h+  v +RDLkP+nim+  ++     k++DFG +   p  ++ +      +  + G+P+Y aPe +         D++a G +v e + G++    +   +++++ L
  MMETSP1174-20130828|4111_1 481 QTKQVYALKCMQKQQIVSTHQQRNILNEKDILLKCRHPFILQLH-QTYTNPNELFMLMEIIQGGELWTFIyeKQDGYVPRNRIGgfsdsAAMFysgCIISAFHYIHEMNVAYRDLKPENIMIDSSGY---LKMIDFGFAKTIPYKKNGEI--HSSSYTICGTPEYLAPELIQSKGHDKSVDYWALGCLVYELICGRTPFAHENQRDLFQNIL 686
                 688999************************************85.6678888**************998744579*99987765222223343222589***********************88875...689**********9988433..34556699***********************************98887777777666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     3e-07   0.00041      69     138 ..     530     617 ..     494     629 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3e-07
   TIGR03724  69 peekkivmeyiegkklkdlleekel.................ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 p+e  ++me i+g +l + + ek++                  +   +  +   +H+ ++++ Dl ++Ni++ +++ l +iDfG +k+
  MMETSP1174-20130828|4111_1 530 PNELFMLMEIIQGGELWTFIYEKQDgyvprnriggfsdsaamFYSGCIISAFHYIHEMNVAYRDLKPENIMIdSSGYLKMIDFGFAKT 617
                 55666666666666666666666656666666666665532222223334456799****************4567788******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.52
# Mc/sec: 2002.68
//
Query:       MMETSP1174-20130828|4118_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|4117_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1417.94
//
Query:       MMETSP1174-20130828|4122_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 736.09
//
Query:       MMETSP1174-20130828|4120_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1353.66
//
Query:       MMETSP1174-20130828|4123_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 993.22
//
Query:       MMETSP1174-20130828|4124_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.48
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|4126_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.3   0.0        9.6    4.5   0.0    3.5  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0043        18      12      25 ..      64      77 ..      63      81 .. 0.88
   2 ?    4.5   0.0    0.0023       9.6      11      27 ..     104     120 ..      99     122 .. 0.90
   3 ?    0.1   0.0     0.059   2.4e+02       8      34 ..     185     211 ..     185     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0043
   TIGR00756 12 kagrveeAlelfde 25
                +++++++Ale+f++
  MMETSP1174-20130828|4126_1 64 RQNDPHKALEMFEK 77
                899*********97 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0023
   TIGR00756  11 ckagrveeAlelfdeMk 27 
                 ++ g+ +++++ ++eM+
  MMETSP1174-20130828|4126_1 104 FRLGNHDDMVKRYNEML 120
                 589*************7 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.059
   TIGR00756   8 sglckagrveeAlelfdeMkergivPd 34 
                 +++ ++++++ + ++ +e++++   Pd
  MMETSP1174-20130828|4126_1 185 KAYLQSKDYNQVNRIVQELHRSCQLPD 211
                 5899**************999866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1300.64
//
Query:       MMETSP1174-20130828|4127_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1038.88
//
Query:       MMETSP1174-20130828|4129_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-12   43.4   0.0    6.8e-12   43.3   0.0    1.1  1  TIGR02180 GRX_euk: glutaredoxin
    1.2e-10   39.3   0.0    1.7e-10   38.9   0.0    1.2  1  TIGR02181 GRX_bact: glutaredoxin 3
    7.4e-09   33.3   0.0      9e-09   33.1   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      3e-07   28.1   0.0    4.3e-07   27.7   0.0    1.2  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
     0.0021   16.0   0.0     0.0022   16.0   0.0    1.1  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
     0.0073   14.6   0.0     0.0098   14.2   0.0    1.1  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   9.9e-15   6.8e-12      13      70 ..       5      60 ..       2      79 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 9.9e-15
   TIGR02180 13 kkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsdd 70
                 kak+lL+ +  +  + v+eld++ +g +l++ L +ltg+++VP i+i+++f+GG++d
  MMETSP1174-20130828|4129_1  5 VKAKALLDGKGAS--YFVLELDEIADGPALRAELGQLTGRTSVPAIWIGETFVGGCND 60
                5789999988555..9****************************************98 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.4e-13   1.7e-10      12      80 .]       4      79 ..       2      79 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 2.4e-13
   TIGR02181 12 csrAkalLeekgvefeeie...vdkdkeareemierskgrrtvPQifigdvhvGGcdd.....LlaleregkLdkLL 80
                 ++AkalL+ kg+++  +e   + + +++r+e+ + + gr++vP i+ig++ vGGc+d     + +l  +g Ld++L
  MMETSP1174-20130828|4129_1  4 RVKAKALLDGKGASYFVLEldeIADGPALRAELGQLT-GRTSVPAIWIGETFVGGCNDgplggVNSLAAAGTLDAML 79
                579**********887665111566789*********.7******************96655556777778787776 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.3e-11     9e-09      24      96 ..       7      84 ..       1      85 [] 0.88

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.3e-11
   TIGR02189 24 vkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGglee.....vmalhlsgsLvpllkkaga 96
                +k Ll + G++  v eld+ a++  + + l +l+++++vP++++G ++vGg ++     v +l   g+L  +l +aga
  MMETSP1174-20130828|4129_1  7 AKALLDGKGASYFVLELDEIADGPALRAELGQLTGRTSVPAIWIGETFVGGCNDgplggVNSLAAAGTLDAMLADAGA 84
                689************************************************986555557888888999888888887 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.2e-10   4.3e-07      20      72 ..       3      59 ..       1      61 [. 0.92

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 6.2e-10
   TIGR02190 20 fCakakavLkekGldfeeivLgkdirtrslra....vtGattvPqvfinGkliGgsd 72
                f +kaka+L +kG  +  + L++ + + +lra    +tG+t+vP ++i+  ++Gg +
  MMETSP1174-20130828|4129_1  3 FRVKAKALLDGKGASYFVLELDEIADGPALRAelgqLTGRTSVPAIWIGETFVGGCN 59
                779***********************99998876669*****************986 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.2e-06    0.0022      33      82 ..       7      59 ..       2      81 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.2e-06
   TIGR00365 33 avqilkalgvefatv...nvledeeireelkeysnWPtiPqlyvkgelvGGcd 82
                a  +l+  g+++  +   ++ + +++r+el + +    +P +++ + +vGGc+
  MMETSP1174-20130828|4129_1  7 AKALLDGKGASYFVLeldEIADGPALRAELGQLTGRTSVPAIWIGETFVGGCN 59
                5555666666655541114566789***************************7 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05    0.0098      15      63 ..       6      57 ..       4      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.4e-05
   TIGR02196 15 kakeyLkskgiafeei...dvekdsaaaeellkklgqrsvPvivigekivvG 63
                kak+ L  kg ++  +   ++++++a ++el + +g+ svP i ige+ v G
  MMETSP1174-20130828|4129_1  6 KAKALLDGKGASYFVLeldEIADGPALRAELGQLTGRTSVPAIWIGETFVGG 57
                789999999999965422258899999********************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 339.97
//
Query:       MMETSP1174-20130828|4128_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-89  295.3   0.0    4.4e-88  293.1   0.0    1.8  1  TIGR00670 asp_carb_tr: aspartate carbamoyltransferase
    8.4e-32  108.4   0.0    1.3e-30  104.4   0.0    2.0  1  TIGR00658 orni_carb_tr: ornithine carbamoyltransferase
    6.9e-15   53.1   0.0      4e-13   47.3   0.0    2.9  2  TIGR03316 ygeW: probable carbamoyltransferase YgeW
  ------ inclusion threshold ------
      0.024   11.3   0.0      0.048   10.3   0.0    1.4  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase


Domain annotation for each model (and alignments):
>> TIGR00670  asp_carb_tr: aspartate carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.0   4.3e-91   4.4e-88       2     303 ..      41     371 ..      40     372 .. 0.96

  Alignments for each domain:
  == domain 1    score: 293.1 bits;  conditional E-value: 4.3e-91
   TIGR00670   2 hlisiedlsreeielllekaeelkqklsskekskalkgkivaalFfEpSTRTrlSFetaakrlggsvvnlsdseasSvaKgEtlaDTikvleaysvdiiviRhrlegaarliaevaevpviNaGdGknqHPtQtLLDlyTileefg...........................rldglkvalvGDlkygRtvhSlvkaLal.fg..vevylvaPeeLrlpkeileelkkkgvkvketesl.eevleeaDvlyvtRiQkERlpdleeleklkeaykitkerlea..lkkevkvlHPlPvnrvdeiesevldtekaklfkQaknGvavRmallelll 303
                  ++s +++++e +e+l+  a++ ++++ + ++ k l+g+++a +F+EpSTRT  SF++aa rlgg  + l++ + sS++KgEtl DT++ le y +d++v+Rh+ +g a+++a+    pviNaGdG+++HPtQ+LLDlyT+  e+                             l+g+ + +vGDlk+gRt+hSl+k La  +g  v++ lv+P+eL lp+e+ + l++  + +++++ l  evl++aDvlyvtR+QkER+ d++++e+lk  y +t + l +  +k+++ ++HPlP  rv ei+++v+++++a++f+Q++nG+ vRmal++l+l
  MMETSP1174-20130828|4128_1  41 SIVSASQFNVEALETLFGIADRCRDNVGTGTPIKILEGRLLACVFMEPSTRTSCSFQSAALRLGGTSIMLNE-QGSSAKKGETLEDTVRCLECY-ADALVLRHPVKGSAQRAADACRKPVINAGDGTGEHPTQSLLDLYTMRTEIMlsgsrdneaaassisaaasattttsreALKGKVIVMVGDLKHGRTIHSLAKLLAAnYGdlVTIRLVSPPELELPSELCDYLRSCDTGFTCHTGLtTEVLADADVLYVTRVQKERFADQSQYEELKLRYIVTPQLLVDtgAKASLVIMHPLP--RVGEIDPAVDSDPRAAYFRQMENGMYVRMALVALVL 371
                 689999*****************************************************************9.99*******************.***********************************************99988899*********************999*************************862556999**********************9999999998459************************************9976124666********..********************************9987 PP

>> TIGR00658  orni_carb_tr: ornithine carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   1.3e-33   1.3e-30       3     303 ..      42     371 ..      40     372 .. 0.86

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 1.3e-33
   TIGR00658   3 llslldlseeelkellelakklkkekkkgkeekklkgktlaliFekrstRtRvsfevaayelGaqvlylnkeelqlgrkesikDtarvlsryvdaivvRvykhedveelakyasvPvingL.tdlehPcqilaDlltikeklgklkev............................klvyvGDa..nnvansll.laaaklG..ldvvvatPeglepeaeivkkakkiakenggkleltedpkkavkdadviy.tDvwvsmGeeekkeerlkllk.pyqvneellela..kpevkflhCLPavrGeevtdevlegeasivfdeaenRlhaqkavlkall 303
                 ++s  +++ e l++l  +a++ + +  +g+  k+l+g+ la +F  +stRt +sf+ aa +lG+ +++ln++ +   ++e+++Dt r l+ y da+v+R   +   +  a+    Pvin+     ehP+q l Dl t++ ++  l++                              +v vGD      ++sl  l aa  G  +++++++P++le  +e+++  + +      +  lt    + ++dadv+y t v        + +++ + lk  y v+ +ll  +  k + +++h LP+v   e+   v   ++   f + en +++ +a+++++l
  MMETSP1174-20130828|4128_1  42 IVSASQFNVEALETLFGIADRCRDNVGTGTPIKILEGRLLACVFMEPSTRTSCSFQSAALRLGGTSIMLNEQGSSAKKGETLEDTVRCLECYADALVLRHPVKGSAQRAADACRKPVINAGdGTGEHPTQSLLDLYTMRTEIM-LSGSrdneaaassisaaasattttsrealkgkVIVMVGDLkhGRTIHSLAkLLAANYGdlVTIRLVSPPELELPSELCDYLRSCDTGFTCHTGLTT---EVLADADVLYvTRVQKE---RFADQSQYEELKlRYIVTPQLLVDTgaKASLVIMHPLPRVG--EIDPAVDSDPRAAYFRQMENGMYVRMALVALVL 371
                 6777889999999**********************************************************************************************************8625679************97764.33333345799999*****************8889****86567899996466788886678899************9999887666666666665...5678*****93444443...44444444444328****9999766569999*******998..***************************999876 PP

>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   3.9e-16     4e-13      12     160 ..      48     181 ..      38     204 .. 0.82
   2 ?    1.1   0.0     0.044        46     264     355 ..     280     368 ..     272     370 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 3.9e-16
   TIGR03316  12 ktrdeleavldvaaalkalraenistkllesglgislfrdnstrtrfsfasalnllGleaqdldegksqiahGetvretaevisfladaiGirddmylgvGnaymrevakaldegykdgvleqrialvnl.qcdidhptqaladiltlre 160
                    + le+++ +a+  +     +   k+le +l   +f++ strt  sf+sa   lG+  + l+e+ s   +Get  +t++ +  +ada+ +r+ +    G a     a+a            r +++n      +hptq+l d+ t+r 
  MMETSP1174-20130828|4128_1  48 FNVEALETLFGIADRCRDNVGTGTPIKILEGRLLACVFMEPSTRTSCSFQSAALRLGGTSIMLNEQGSSAKKGETLEDTVRCLECYADALVLRHPVK---GSAQ--RAADA-----------CRKPVINAgDGTGEHPTQSLLDLYTMRT 181
                 556889**************************************************************************************98775...5542..22333...........4556666523344677777777766665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.044
   TIGR03316 264 telytasdteGlellekellaqnkkykdwe....cteel.mkltkdgealymhclpadisGvsckegevteevldkyrvviykeasyklyviaalil 355
                 te+++++d   +  ++ke +a++++y++ +    +t +l ++++     + mh lp          ge++  v   +r + +++ ++ +yv  al++
  MMETSP1174-20130828|4128_1 280 TEVLADADVLYVTRVQKERFADQSQYEELKlryiVTPQLlVDTGAKASLVIMHPLPRV--------GEIDPAVDSDPRAAYFRQMENGMYVRMALVA 368
                 8888999999999999999999999988651111455541556666666789999965........8999999999999999999999999888876 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.7e-05     0.048     260     314 ..     259     311 ..     255     323 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.7e-05
   TIGR01821 260 aklidavrslapgfifttslpPavaagalasirhlkesqklreaqqekvkklkkl 314
                 ++l+d++rs  +gf   t l+  v+a a   + ++   qk+r a+q++ ++lk +
  MMETSP1174-20130828|4128_1 259 SELCDYLRSCDTGFTCHTGLTTEVLADA--DVLYVTRVQKERFADQSQYEELKLR 311
                 689*********************9876..6899999999******999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1160.28
//
Query:       MMETSP1174-20130828|4131_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 216.46
//
Query:       MMETSP1174-20130828|4133_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 489.64
//
Query:       MMETSP1174-20130828|4130_1  [L=1090]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1090 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.75
# Mc/sec: 1918.24
//
Query:       MMETSP1174-20130828|4136_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.29s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 1258.11
//
Query:       MMETSP1174-20130828|4137_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 1625.12
//
Query:       MMETSP1174-20130828|4138_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 951.55
//
Query:       MMETSP1174-20130828|4139_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.24s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 615.07
//
Query:       MMETSP1174-20130828|4140_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 962.92
//
Query:       MMETSP1174-20130828|4141_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1073.81
//
Query:       MMETSP1174-20130828|4142_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 411.68
//
Query:       MMETSP1174-20130828|4143_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|4144_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.3    2.5  12.1         12    2.0   8.4    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   8.4    0.0029        12     324     416 ..      86     180 ..      62     188 .. 0.39

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0029
   TIGR02442 324 kkleekkeeakpdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska..r.argasGrrsktrs 416
                  +++++++++++  +++ ++  +++++  +++ +++ p+++d+  +++ +   +  +++++++  +++ +f  ++ + s++  +  ++++G+    rs
  MMETSP1174-20130828|4144_1  86 GQQQQQQQRQDSYGQQQGQGygQQQQQPGQGSYGQQPPQRQDSYGQQQGQ---GYGQQQQQQQPRQNDMTFGARAAKGSNQyaNgSSQNTGNYITDRS 180
                 12222222222222222222111222222222223334333333332222...222222234444455555555554444443446666666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 565.26
//
Query:       MMETSP1174-20130828|4145_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1289.20
//
Query:       MMETSP1174-20130828|4146_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.1   0.1      0.019   12.4   0.1    1.3  1  TIGR04099 biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family


Domain annotation for each model (and alignments):
>> TIGR04099  biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.7e-06     0.019      23      55 ..     122     154 ..     106     165 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.7e-06
   TIGR04099  23 rHWlllAaaagreepdFrdadgakvYAaftavs 55 
                  HW +lA   gr+e +  d  g+  YAa  a+ 
  MMETSP1174-20130828|4146_1 122 THWSMLAYWRGRSEFQHFDSAGTSNYAAAKATA 154
                 6***************************88764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1078.54
//
Query:       MMETSP1174-20130828|4147_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|4149_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.2   0.0       0.26    7.1   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0   0.00022      0.91     124     151 ..      11      38 ..       4      51 .. 0.76
   2 !    7.1   0.0   6.4e-05      0.26     127     158 ..      49      81 ..      38      90 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00022
   TIGR00870 124 stseftkgitalilAihkqnyeivklLl 151
                 ++ +   g t+l +A+ k n+ +v+ L 
  MMETSP1174-20130828|4149_1  11 NKARTDTGTTPLYMAAGKGNLDVVRYLA 38 
                 566778899***************9986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 6.4e-05
   TIGR00870 127 eftkgitalilAihkqnyeivklLle.kgasve 158
                 +   g t+l +A+++ n+ iv+ L +   a+v+
  MMETSP1174-20130828|4149_1  49 RTDDGSTPLYMAAQEGNLDIVRYLAHeAHANVN 81 
                 556799****************99751467776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1174-20130828|4150_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   0.1      0.043   11.4   0.1    1.3  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     1e-05     0.043      48     104 ..     321     379 ..     316     386 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
   TIGR02251  48 vdeFlerlskl.yelvvfTasleeYadkvldildakk.kvlsrrlyRescvetngkyvK 104
                 +++Fl++ + + y + vf +s  +Y+ +v d +d +  +++ r ++R +     +++ K
  MMETSP1174-20130828|4150_1 321 LEMFLDQYETIpYRVLVFLTSYINYGGRVTDYIDLRTiDIVMRDFFRAEVLDDFHQFDK 379
                 6899*9999876**********************6543789999***998887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 2043.08
//
Query:       MMETSP1174-20130828|4154_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00083   16.5   0.1    0.00083   16.5   0.1    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     2e-07   0.00083      25      49 ..      32      56 ..      10      57 .] 0.85

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-07
   TIGR00599 25 tslRChvCkdffkaPvltsCsHtFC 49
                  l C +C  f ++Pv  +C+H FC
  MMETSP1174-20130828|4154_1 32 GVLICAICLGFPEKPVKLPCNHEFC 56
                4689********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|4151_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1209  (0.294734); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                       141  (0.0343735); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 4.10u 0.45s 00:00:04.55 Elapsed: 00:00:03.33
# Mc/sec: 240.59
//
Query:       MMETSP1174-20130828|4153_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.65
# Mc/sec: 621.36
//
Query:       MMETSP1174-20130828|4156_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|4157_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 1045.56
//
Query:       MMETSP1174-20130828|4160_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|4162_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 194.68
//
Query:       MMETSP1174-20130828|4161_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-14   48.3   5.3    2.1e-06   23.7   1.2    3.6  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    6.4e-11   40.1   0.2    9.2e-05   19.9   0.5    3.9  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.5e-06   25.1   0.8    0.00023   18.7   0.2    3.9  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.5e-05   20.5   2.1     0.0056   12.7   0.0    2.3  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    3.9e-05   22.1   3.5       0.36    9.3   0.1    5.1  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.36     3e+02     843     863 ..     142     162 ..     110     169 .. 0.63
   2 !    9.9   0.0   3.8e-05     0.031     131     192 ..     238     307 ..     205     342 .. 0.69
   3 !   13.6   0.0     3e-06    0.0024     607     695 ..     513     604 ..     500     612 .. 0.52
   4 !   23.7   1.2   2.6e-09   2.1e-06     576     679 ..     677     782 ..     654     806 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.36
   TIGR02917 843 lGwvlvekgeakealkllrkA 863
                 lG vl   g+ +eal+ll k 
  MMETSP1174-20130828|4161_1 142 LGLVLHDLGRHEEALPLLHKH 162
                 566666666666666666664 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 3.8e-05
   TIGR02917 131 rglAaLglgeleeAqksleq.......A.laiapksleaklglAqlalaenkldearalvdevLtadpkn 192
                 +g++ L+lg+   +++ + +       A ++ +p+sl+a lglA++  a  + +e+  +++++L+++p++
  MMETSP1174-20130828|4161_1 238 LGHTMLALGNYTGSKEMFHTvlsgvsgAvQTGSPASLSALLGLARVNEAIAQPNETIRFLERALETSPNH 307
                 4555666666666666665511111112145688899999999999999999999999999999998876 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 3e-06
   TIGR02917 607 lgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLel.kp.dnteaqll.laqLlleekrleeAlkllkel 695
                 +g+a+ ++++ +kav+ f+k++  +pd  ++++ l d+ + ++  ++ + ++  a     p + t a  +  a+L++ ++  ++Al ll++l
  MMETSP1174-20130828|4161_1 513 MGDAYRKTGQWDKAVKEFRKAVRKAPDLVKPHIALGDAASNKRGFNESAHEYITAFLVgGPsNVTVAPAMkVAELMVTQGAGDAALALLHRL 604
                 45666666666666666666666666666666666666665555555444444443221221223332221345555555555555555544 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 2.6e-09
   TIGR02917 576 yylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkka..LelkpdnteaqlllaqLl 679
                  + s  +++ a++  + aa++ p+ p+ l  lg+aq +akdl  aves++ +l+l+p  ++a+l l  + +  k++++Al s ++a  L   + ++ aq  +a++ 
  MMETSP1174-20130828|4161_1 677 VMDSPHSPQIAINSFRRAAAIDPSDPRFLTNLGTAQREAKDLPGAVESYRAALALAPSLGAAHLNLGLALKELKDVPAALASFQAAhgLGVRNALLYAQACQAEID 782
                 46667788999999*******************************************************************9998644777777777777777764 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.33   2.7e+02      29      84 ..      96     155 ..      80     168 .. 0.73
   2 ?    0.5   0.0     0.099        81      55     101 ..     263     310 ..     214     342 .. 0.72
   3 !   13.2   0.0   1.3e-05      0.01      23      87 ..     499     563 ..     492     575 .. 0.81
   4 !   19.9   0.5   1.1e-07   9.2e-05      24     126 ..     660     763 ..     653     804 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.33
   TIGR02521  29 kaakirvqLaleYleq..gdlekAkenlekAlel.dpk.dadanlalAlyyqqlgelekA 84 
                  +a ++  L+ + le   gdl +A  +l +A e  +p+   da   l+l++ +lg++e+A
  MMETSP1174-20130828|4161_1  96 IMAWVYFGLGRAHLEGelGDLPSAALALRNATETvAPEpFPDASRLLGLVLHDLGRHEEA 155
                 566667777777776433899999999999988623432478999999999999999998 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.099
   TIGR02521  55 ekAlel.dpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                   A++   p++ +a l lA + + + + +++ +  ++Al+++pn  +v
  MMETSP1174-20130828|4161_1 263 SGAVQTgSPASLSALLGLARVNEAIAQPNETIRFLERALETSPNHLAV 310
                 446654257777888999999999999999999999999999997665 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.3e-05
   TIGR02521  23 kkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAees 87 
                 ++++  ++ + +++++ +Y + g+ +kA ++  kA+ ++p+  +++ al+ +  + +  ++ +++
  MMETSP1174-20130828|4161_1 499 SDNASTRVCENYMKMGDAYRKTGQWDKAVKEFRKAVRKAPDLVKPHIALGDAASNKRGFNESAHE 563
                 5556667788999***********************************99877665544444444 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 1.1e-07
   TIGR02521  24 kkdrekaakirvqLaleYleqgd.lekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAi 126
                 + +r    ++r  Lale + + +  + A ++   A ++dp+d +    l+ +  + ++l  A es+r Al+l+p  g+++ N G  L + k++  A + f+aA 
  MMETSP1174-20130828|4161_1 660 APNRTDLLDARGRLALEVMDSPHsPQIAINSFRRAAAIDPSDPRFLTNLGTAQREAKDLPGAVESYRAALALAPSLGAAHLNLGLALKELKDVPAALASFQAAH 763
                 566777778899999999998651567**************************************************************************995 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.34   2.8e+02      49      85 ..     271     307 ..     237     320 .. 0.62
   2 ?    1.0   0.0     0.084        69      57     107 ..     512     563 ..     507     590 .. 0.68
   3 !   18.7   0.2   2.9e-07   0.00023      37     113 ..     687     763 ..     683     791 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.34
   TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                 p++   +lgLa +  a  + +e i + ++a+  ++++
  MMETSP1174-20130828|4161_1 271 PASLSALLGLARVNEAIAQPNETIRFLERALETSPNH 307
                 4555566777777777777777777777777666655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.084
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllal.gekeeAlk 107
                  ++ ++ +++++++A++ +  a+   +d  +p+ ++++   ++ g +e+A +
  MMETSP1174-20130828|4161_1 512 KMGDAYRKTGQWDKAVKEFRKAVRKAPDLVKPHIALGDAASNKrGFNESAHE 563
                 4666777777777777777777777777777777766655433145555554 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.9e-07
   TIGR02552  37 AeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                 A + F+  aa+dp + +++  L+ +  ++k+  +A++ Y +a+al ++  ++++ ++  l +l++   Al+ +++a 
  MMETSP1174-20130828|4161_1 687 AINSFRRAAAIDPSDPRFLTNLGTAQREAKDLPGAVESYRAALALAPSLGAAHLNLGLALKELKDVPAALASFQAAH 763
                 667799999*****************************************************************986 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.8e-06    0.0056      91     225 ..     512     650 ..     503     660 .. 0.77
   2 !    6.1   0.6   0.00068      0.56      80     148 ..     696     764 ..     677     812 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.8e-06
   TIGR03939  91 alAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltl.adagkdeeAlkalkelkerfp....sdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlakqhpelftdeekrr 225
                  ++ A+R+ +qwdkA++ +rk+ +++P   +  ++l  ++    g +e+A+++++++    p     + ++  a+  v + a+d++ al      lr   d +e++  +v  ++ lg+ a+ +++  +++   + +++++
  MMETSP1174-20130828|4161_1 512 KMGDAYRKTGQWDKAVKEFRKAVRKAPDLVKPHIALGDAAsNKRGFNESAHEYITAFLVGGPsnvtVAPAMKVAELMVTQGAGDAALALLHRLYELRSGLDPEEVISVRVMQARCLGMQAMREKSGGKAT-YSSVAQQAD 650
                 5678***********************9665555555444045677899********9888844444567778899999999999999999999999999999999999999999999888665555544.555555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00068
   TIGR03939  80 slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelke 148
                  + +   r l +l+ A+R++k+ + A+e yr +l  +P+   + l l l+l + ++   Al+  +++  
  MMETSP1174-20130828|4161_1 696 AIDPSDPRFLTNLGTAQREAKDLPGAVESYRAALALAPSLGAAHLNLGLALKELKDVPAALASFQAAHG 764
                 344444455666667777777777777777777777776666555555555555555555554444443 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0096       7.9      42     105 ..     235     303 ..     229     310 .. 0.77
   2 ?   -2.9   0.0       2.6   2.1e+03      46      84 ..     382     420 ..     381     426 .. 0.79
   3 !    9.3   0.1   0.00044      0.36       8     102 ..     513     604 ..     508     607 .. 0.78
   4 ?   -2.4   0.0       1.8   1.5e+03      86     105 ..     629     648 ..     625     648 .. 0.89
   5 ?    3.1   0.0     0.035        29      45     100 ..     708     760 ..     702     763 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0096
   TIGR02795  42 qYwlGealyakkkykdAakaflevvkkyp.....ksekapdallklgeslqelgqkekAkktlqevikr 105
                 +  lG +++a ++y+ +++ f++v++  +      s+ +  all l+++ +++ q ++  + l++  ++
  MMETSP1174-20130828|4161_1 235 RLGLGHTMLALGNYTGSKEMFHTVLSGVSgavqtGSPASLSALLGLARVNEAIAQPNETIRFLERALET 303
                 56699*******************998651111145666689999999999999999988888876665 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.6
   TIGR02795  46 GealyakkkykdAakaflevvkkypksekapdallklge 84 
                 G +  ++   +dA ++ l++ ++ p+++ ++  ll  + 
  MMETSP1174-20130828|4161_1 382 GHLAGNQTASTDACRHALTFSTSTPQQQVTALKLLAASI 420
                 666778888999999999999999999999888887655 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00044
   TIGR02795   8 aallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqev 102
                  +  + k g+++kA ++F++ ++k P+  +    +  lG a  +k+ ++++a+++ +++     s+ +    +k++e+++++g  ++A + l+++
  MMETSP1174-20130828|4161_1 513 MGDAYRKTGQWDKAVKEFRKAVRKAPDLVK---PHIALGDAASNKRGFNESAHEYITAFLVGGPSNVTVAPAMKVAELMVTQGAGDAALALLHRL 604
                 455556788999999999999999888765...46669999999999999999999888888888888888889999999999888888877765 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.8
   TIGR02795  86 lqelgqkekAkktlqevikr 105
                 +q++++k+  k+t++ v+++
  MMETSP1174-20130828|4161_1 629 MQAMREKSGGKATYSSVAQQ 648
                 79999**********99875 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.035
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                 lG a+ ++k++  A ++++++++     +    a l+lg +l+el++  +A + +q
  MMETSP1174-20130828|4161_1 708 LGTAQREAKDLPGAVESYRAALAL---APSLGAAHLNLGLALKELKDVPAALASFQ 760
                 788999999999999999999984...55677889999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.87
# Mc/sec: 1442.78
//
Query:       MMETSP1174-20130828|4165_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|4171_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|4169_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.9e-189  626.4   1.5   4.9e-189  626.4   1.1    1.6  2  TIGR01425 SRP54_euk: signal recognition particle protein SRP54
   5.2e-114  379.2   0.6   5.2e-114  379.2   0.4    1.9  2  TIGR00959 ffh: signal recognition particle protein
    2.1e-72  241.5   0.1    3.3e-72  240.9   0.1    1.3  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    1.4e-22   78.9   0.2    1.4e-22   78.9   0.1    2.1  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    2.3e-05   21.6   0.1    5.2e-05   20.4   0.0    1.5  1  TIGR01420 pilT_fam: twitching motility protein
    0.00017   19.3   0.8      0.004   14.8   0.5    2.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00048   17.1   0.5     0.0011   15.8   0.0    1.8  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0005   17.1   0.2     0.0056   13.7   0.1    2.3  1  TIGR00750 lao: LAO/AO transport system ATPase
     0.0019   15.6   0.0     0.0067   13.7   0.0    1.9  2  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0085   14.0   0.2      0.042   11.7   0.0    2.2  2  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
     0.0095   13.5   0.0      0.018   12.5   0.0    1.4  1  TIGR00455 apsK: adenylylsulfate kinase


Domain annotation for each model (and alignments):
>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  626.4   1.1  1.3e-191  4.9e-189       1     426 [.       2     426 ..       2     428 .. 0.99
   2 ?   -4.6   2.2       4.5   1.7e+03     338     357 ..     468     487 ..     429     496 .. 0.66

  Alignments for each domain:
  == domain 1    score: 626.4 bits;  conditional E-value: 1.3e-191
   TIGR01425   1 vladlGsklssalrslssatvideevlnellkeistallesdvnvklvrklrenikkkinleelasglnkrkliqkavfeelvnlvdpkveafkpkkgkssvimfvGlqGaGktttitklalyykkkGfkvalvcadtfraGafdqlkqnatkakipfyGsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaikpdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGdlkGlidkvkdlklddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdkeldstdkvllkeesrivrvarGsGraireveelleqykkla 426
                 vl +lG+kl+sal++l+++tv+deevln++l++i++alle+dvn+k+v +l++ ik ++nle+ ++g n+rk+iqkav +elv++++p+ e+ ++kkg+++vimfvGlqG+Gkttti+k+a yy +kG+k ++vcadtfraGa+dqlkqnatk + pfyGsy+e+dpv+ias+Gve+fk ek+++iivdtsGrh+qe++lfeem++++ea++pd+i+f++d++ Gqa+++qak+f ++v++gsv+itkldGhakGGGalsa aat +piif+G+Ge+ dd+e+f+a sfvs+llG+Gd++Gl++ +kd    d+++el++k+++G ftlrd++eq+qn++k+Gpl ++++mipG+ + l+++g+++e+s +lkk+++++dsmtd eld+    l k + r+ r+arGsG+   ev++ll+ +k+++
  MMETSP1174-20130828|4169_1   2 VLQELGRKLESALKKLHATTVVDEEVLNTMLNDIARALLEADVNIKVVGQLKNAIKMRVNLEDAPAGNNRRKMIQKAVIDELVAMLNPDAEPHQMKKGQPNVIMFVGLQGSGKTTTIAKFAHYYLRKGWKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIASDGVEQFKAEKYEVIIVDTSGRHRQESALFEEMQEIREAVQPDNIVFILDATQGQAVHDQAKSFHEAVDIGSVVITKLDGHAKGGGALSATAATGAPIIFLGSGEHFDDMEPFNASSFVSRLLGMGDMRGLVETIKDTVGMDKQPELMDKFNKGIFTLRDMYEQFQNVMKLGPLNKVMGMIPGIPKGLIPNGGDKEGSLRLKKFMYMMDSMTDDELDGVVD-LDKCPQRVERIARGSGTYPIEVQMLLKCHKQFE 426
                 899*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9876.5677*************************9986 PP

  == domain 2    score: -4.6 bits;  conditional E-value: 4.5
   TIGR01425 338 nllkmGplgnilsmipGlss 357
                  l++mG   n+++m+  +s+
  MMETSP1174-20130828|4169_1 468 MLQQMGGSQNVMNMMKQMSQ 487
                 36677777777777766653 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.2   0.4  1.4e-116  5.2e-114       2     427 ..       4     430 ..       3     431 .. 0.98
   2 ?   -2.8   3.5       1.2   4.6e+02     337     360 ..     467     490 ..     437     501 .. 0.68

  Alignments for each domain:
  == domain 1    score: 379.2 bits;  conditional E-value: 1.4e-116
   TIGR00959   2 esLseklkkileklskkkkitekdikealkeirlaLleaDVnlkvvkefikkvkekalgqevlkslspkqqlikivkeeLvallgeesaelklaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekekekspveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevlnPdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilgmGDvlsLvekaeevvdeeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkiln..asRkkRiakGsGtsvsdvnklikefeqakklmk 427
                 ++L+ kl+++l+kl+  + ++e+ +++ l++i +aLleaDVn+kvv ++ +++k ++  ++  ++ + ++++ k v +eLva+l  ++++ ++++ +p vi++vGLqGsGKttt+aK a++ + +++ k  +v +D+ R++A +qLk+ ++++  p++ + +e++pv+ia++++e++k+ek++v+ivDt GR + +++l ee++ei+e+++Pd+i++++da +Gq +   ak+F+e +++ +vv+tklDg a+gG aLs ++ tg Pi f+g+gE+++d+e+F++ + ++R+lgmGD+  Lve ++++v  +++ +l+ k++k+ f+l D++eq++++ klG+l+k++ m+Pg+ k    +   +e + +lk++  +++smt +E +    l+  ++R +Ria+GsGt   +v  l+k ++q + ++k
  MMETSP1174-20130828|4169_1   4 QELGRKLESALKKLHATTVVDEEVLNTMLNDIARALLEADVNIKVVGQLKNAIKMRVNLEDAPAGNNRRKMIQKAVIDELVAMLNPDAEPHQMKKGQPNVIMFVGLQGSGKTTTIAKFAHYYL-RKGWKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIASDGVEQFKAEKYEVIIVDTSGRHRQESALFEEMQEIREAVQPDNIVFILDATQGQAVHDQAKSFHEAVDIGSVVITKLDGHAKGGGALSATAATGAPIIFLGSGEHFDDMEPFNASSFVSRLLGMGDMRGLVETIKDTVGMDKQPELMDKFNKGIFTLRDMYEQFQNVMKLGPLNKVMGMIPGIPKGLIPNGGDKEGSLRLKKFMYMMDSMTDDELDGVVDLDkcPQRVERIARGSGTYPIEVQMLLKCHKQFEGVVK 430
                 6899*********************************************************************************************************************55.57899*********************************************************************************************************************************************************************************************************************************988888888888999********************9999899**************************998877 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.2
   TIGR00959 337 rqikklGslskllkmlPglgkvkk 360
                 r+++++G  +++++m+  ++++  
  MMETSP1174-20130828|4169_1 467 RMLQQMGGSQNVMNMMKQMSQMDM 490
                 578999999999999998887654 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   0.1   8.8e-75   3.3e-72       4     279 .]      29     295 ..      26     295 .. 0.97

  Alignments for each domain:
  == domain 1    score: 240.9 bits;  conditional E-value: 8.8e-75
   TIGR00064   4 eevleeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklelkelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkvkkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveall 279
                 + +l+++ ++LleaDv+++vv ++ +++k +++ ++    ++ ++++++++ ++l  +l+ + +    +++++ +pnvi++vG+ G+GKTttiaK a+++ ++g k+ ++ +DTFrA+A +Ql++ a +l ++   + ++adp  ++ d++++ ka++++v+++DT+GR ++++ L +e++ i+  ++      pd+++++ldat+Gq    qak F+eav++ ++++TKlDg akgG +l+ + +++ p++++g Ge+ dD+++F+a++fv++ll
  MMETSP1174-20130828|4169_1  29 NTMLNDIARALLEADVNIKVVGQLKNAIKMRVNLEDAPAGNNRRKMIQKAVIDELVAMLNPDAE---PHQMKKGQPNVIMFVGLQGSGKTTTIAKFAHYYLRKGWKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIASDGVEQFKAEKYEVIIVDTSGRHRQESALFEEMQEIREAVQ------PDNIVFILDATQGQAVHDQAKSFHEAVDIGSVVITKLDGHAKGGGALSATAATGAPIIFLGSGEHFDDMEPFNASSFVSRLL 295
                 67899****************************************************9888776...456899******************************************************************************************************************9......******************************************************************************9985 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.1   3.7e-25   1.4e-22     120     286 .]      10     193 ..       2     193 .. 0.82
   2 ?   -0.7   0.4      0.66   2.5e+02     110     151 ..     446     489 ..     414     496 .. 0.55

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 3.7e-25
   TIGR03499 120 lkellekqlselal..eeedperakllkklleagvseelarelleklke..........kedaeeareklreaLekklsvkkeedeile.kggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtDtyRiGAveQLktYakilgvpvkvvkdpkeleeale......elkdkdliLiDTaG 286
                 l+++l+k+ +++ +  e  +   +++ + llea+v+ +++ +l + +k+          +++++ +++++ + L  +l+ ++e  ++++ ++ vi++vG  G+GKTTT+AK A +++ + g  k  ++ +Dt+R GA +QLk+ a  l +p++  +++++  ++ +      + +++++i++DT G
  MMETSP1174-20130828|4169_1  10 LESALKKLHATTVVdeEVLNTMLNDIARALLEADVNIKVVGQLKNAIKMrvnledapagNNRRKMIQKAVIDELVAMLNPDAEPHQMKKgQPNVIMFVGLQGSGKTTTIAKFAHYYLRK-GW-KCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIASdgveqfKAEKYEVIIVDTSG 193
                 444444444443336677889999**********************9999999999998899999*************888888887763568********************988877.66.9*****************************99998886555431222223567899*****98 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.66
   TIGR03499 110 eeelrkelkalkellekqlselal..eeedperakllkklleag 151
                 +++++++ ++  ++++k +++ +l     +++  +++k++ +++
  MMETSP1174-20130828|4169_1 446 AKQMQRNPNQCMSQIQKAMDPRMLqqMGGSQNVMNMMKQMSQMD 489
                 25555666666666666665543344333444444444444444 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   5.2e-05      47     145 ..      25     124 ..       7     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
   TIGR01420  47 qkllkeileekqreeleekkeldfavslaelaRfRvnvfkqrgavalvlRvip.skiptleelglpev.lkelaekkrGlilvtGptGsGKsttlAslidy 145
                 +++l+ +l++  r+ le++ ++ +  +l+++ ++Rvn+     +     ++i+ + i +l ++  p+   +++ + +  +i+++G  GsGK+tt+A +  y
  MMETSP1174-20130828|4169_1  25 EEVLNTMLNDIARALLEADVNIKVVGQLKNAIKMRVNLEDAPAGNNR-RKMIQkAVIDELVAMLNPDAePHQMKKGQPNVIMFVGLQGSGKTTTIAKFAHY 124
                 678999*******************************8665555444.4455525678898888886515677777889*****************87766 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.5   1.1e-05     0.004       5      97 ..     103     227 ..      99     252 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt.............................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl 97 
                  i +vG  ++GK+t++ +++ ++ ++          ++r  + +q +++  +                             y+v ++DT G+ + +      ++e    ++  +iv++ ld+ +g 
  MMETSP1174-20130828|4169_1 103 VIMFVGLQGSGKTTTIAKFAHYYLRKGWKCCmvcaDTFRAGAYDQLKQNATKlrcpfygsyteadpvqiasdgveqfkaekYEVIIVDTSGRHRQESALFEEMQEIREAVQPDNIVFI-LDATQGQ 227
                 6999*******************76665544666788888888889999977***************************************777644444455666666666666666.4444433 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.86   3.2e+02     151     191 ..      78     117 ..      19     123 .. 0.65
   2 !   15.8   0.0   3.1e-06    0.0011      41     144 ..     177     277 ..     172     288 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.86
   TIGR03594 151 dLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStL 191
                 +++de+++ l+ + e ++ + + +p  i ++G   +GK t 
  MMETSP1174-20130828|4169_1  78 AVIDELVAMLNPDAEPHQMK-KGQPNVIMFVGLQGSGKTTT 117
                 34555555555554433333.34556666777777777665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.1e-06
   TIGR03594  41 geaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeeae.aaefyslGlgevlaiSae 144
                 ++++ ++ e+i++DT+G + +e+ l +e++e  e a+ + d i+f++da++g   +D+  ak  +++     +v+ K+d++++    ++  ++ G   ++  S e
  MMETSP1174-20130828|4169_1 177 EQFKAEKYEVIIVDTSGRHRQESALFEEMQEIRE-AV-QPDNIVFILDATQGQAVHDQ--AKSFHEAVDIGSVVITKLDGHAKGGGaLSATAATGAPIIFLGSGE 277
                 56788999********************987654.44.6799*********9999997..577777777778888888888554441444455555555555555 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.5e-05    0.0056      30     145 ..      97     202 ..      92     265 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
   TIGR00750  30 ktGrahvvGltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsllGDrlrlqelatdpgvfirsvptrGslGGlskatrevvklldaaGfDvilvetvGvGqsevdii 145
                 k G+ +v+ + G+ G Gk t + k+++   r+G k  ++  D   +f  G+   D+l+ +  +     f  s     +     + + + v+ + a  ++vi+v+t G  + e ++ 
  MMETSP1174-20130828|4169_1  97 KKGQPNVIMFVGLQGSGKTTTIAKFAHYYLRKGWKCCMVCAD---TFRAGAY--DQLKQNATKLR-CPFYGS----YTEADPVQIASDGVEQFKAEKYEVIIVDTSGRHRQESALF 202
                 5789999*******************************9988...5777764..66654443332.223333....2333445667777888888888888888888777665543 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.8e-05    0.0067      25     118 ..      96     191 ..      80     195 .. 0.81
   2 ?   -2.0   0.0       1.2   4.5e+02     177     207 ..     203     233 ..     199     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
   TIGR00073  25 lekkgllvlnllssiGsGktlllekliea.lkkevkiavieGDlitkaDaeRlrkagvkaiqintGkeChLdaklva.dalkdlelddkdlllien 118
                 ++k +  v+ +++  GsGkt+ + k ++  l k  k++++  D      +++l+++ +k      G     d   +a d ++++++++ ++++++ 
  MMETSP1174-20130828|4169_1  96 MKKGQPNVIMFVGLQGSGKTTTIAKFAHYyLRKGWKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIAsDGVEQFKAEKYEVIIVDT 191
                 5555667899***************9986267889********************99998888888777777655555778888887778877765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
   TIGR00073 177 ekvkadvkkinPeveiilvsaktgegldell 207
                 e++++    ++P+  ++ ++a++g+++++  
  MMETSP1174-20130828|4169_1 203 EEMQEIREAVQPDNIVFILDATQGQAVHDQA 233
                 567777778999999999**99999987654 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00011     0.042       1      31 [.     103     133 ..     103     139 .. 0.90
   2 ?   -1.5   0.0       1.3   4.8e+02      95     130 ..     176     212 ..     175     235 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
   TIGR00176   1 vlqivgykdsGKTtlieklvkelkargyrVa 31 
                 v+ +vg ++sGKTt i+k ++    +g +  
  MMETSP1174-20130828|4169_1 103 VIMFVGLQGSGKTTTIAKFAHYYLRKGWKCC 133
                 7899*****************9999998765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.3
   TIGR00176  95 vEGfkdedlpkivvirkeaeekeiirsk.vlaiasdv 130
                 vE fk e+++ i+v   + + +e    + + +i ++v
  MMETSP1174-20130828|4169_1 176 VEQFKAEKYEVIIVDTSGRHRQESALFEeMQEIREAV 212
                 7889999999988888777666555544344444444 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.9e-05     0.018      11      65 ..      94     148 ..      87     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.9e-05
   TIGR00455  11 kakkkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvrhgLnkdL 65 
                 +++kk +  v+ + Gl gsGk+t     ++   +kg +  ++  D+ r g + +L
  MMETSP1174-20130828|4169_1  94 HQMKKGQPNVIMFVGLQGSGKTTTIAKFAHYYLRKGWKCCMVCADTFRAGAYDQL 148
                 4555666789999********99888889999999***********999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       379  (0.092394); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 1169.38
//
Query:       MMETSP1174-20130828|4174_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|4175_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|4178_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 926.24
//
Query:       MMETSP1174-20130828|4180_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 288.29
//
Query:       MMETSP1174-20130828|4182_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.67
# Mc/sec: 114.26
//
Query:       MMETSP1174-20130828|4183_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.60
# Mc/sec: 217.78
//
Query:       MMETSP1174-20130828|4184_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 543.30
//
Query:       MMETSP1174-20130828|4186_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 291.60
//
Query:       MMETSP1174-20130828|4187_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.83
# Mc/sec: 341.90
//
Query:       MMETSP1174-20130828|4190_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.80
# Mc/sec: 1577.27
//
Query:       MMETSP1174-20130828|4195_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 361.03
//
Query:       MMETSP1174-20130828|4196_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.25s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1000.18
//
Query:       MMETSP1174-20130828|4198_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1174-20130828|4197_1  [L=929]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1486.3   0.0          0 1486.1   0.0    1.0  1  TIGR00117 acnB: aconitate hydratase 2
      1e-46  157.3   0.0    8.6e-46  154.3   0.0    2.0  1  TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit
    6.2e-44  148.0   0.0    1.3e-43  147.0   0.0    1.5  1  TIGR01343 hacA_fam: homoaconitate hydratase family protein
    4.2e-34  115.5   0.0    3.1e-22   76.4   0.0    2.3  2  TIGR01342 acon_putative: putative aconitate hydratase
    1.3e-26   91.3   0.0    2.1e-22   77.5   0.0    2.2  2  TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit
      7e-23   78.7   0.2    9.1e-17   58.6   0.0    2.9  2  TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit
    9.2e-15   51.8   0.0    2.5e-14   50.4   0.0    1.6  2  TIGR00139 h_aconitase: homoaconitase
    3.8e-10   36.5   0.0    7.4e-10   35.6   0.0    1.4  1  TIGR01340 aconitase_mito: aconitate hydratase, mitochondrial
    4.2e-08   29.2   0.0    1.1e-07   27.8   0.0    1.6  1  TIGR01341 aconitase_1: aconitate hydratase 1


Domain annotation for each model (and alignments):
>> TIGR00117  acnB: aconitate hydratase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1486.1   0.0         0         0       3     844 .]      74     919 ..      72     919 .. 0.98

  Alignments for each domain:
  == domain 1    score: 1486.1 bits;  conditional E-value: 0
   TIGR00117   3 eeyrkhvaeraaegiaplplnakqvaalvellkndpeaeeefllellidrvppgvdeaayvkagflaaiakgevksplisaeeavellgtmlggynvepliealeskdkniakaaakalsktllvfdafddveelskt.neyakqvleswaeaewflnkeelaekitvtvfkvdgetntddlspapdaftrpdiplhalamlknkieeieq...rikalkqkgvpvayvgdvvgtgssrksatnsvlwflgkdipfvpnkragglvlggkiapiffntaedsgalpievdvkdlnegdvikiypykgeitnket.evvatfklkpetlldevraggripliigrgltdkarealglsesevfkkakapa.esakgftlaqklvgkacgvkgirpgtycepkvttvgsqdttgamtrdelkelaslgfdadlvlqsfchtaaypkpvdvkthktlpdfisqrggvalrpgdgvihswlnrmllpdtvgtggdshtrfplgisfpagsglvafaaatgvmpldmpesvlvrfkgelqpgitlrdlvnaipyyaikkglltvekkgkvnvfngrileieglpdlkveqafeltdasaersaagctiklnkepvieylksnivllkemiaegyedkrtlkrridamekwlanpelleadadaeyaavieidlaeikepilaapndpddvkllsevagdaidevfigscmtnighfraagkileaak.tvkarlwvvpptrmdeqqlieegyyaifgaagartevpgcslcmgnqarvedgatvfststrnfdnrlgkgakvylgsaelaavaallgkiptkeeylalvsekvesakdklyrylnfnelenfee 844
                  +y+ hvaer + g+ p+pl+a+q+a+lvellkn+p++ee+fll+l+++r+ppgvdeaayvkagflaa+akge  +plis+e+av+llgtm+ggyn++p+++ l+  d ++a++a + ls t+l+fd f dvee++k+ n+ya+qvl+swa+aewf+n+++laekitvtvfkv+getntddlspa da++rpdiplha+amlk  +e+i++   ++++ k+ g+p+ayvgdvvgtgssrksatns+lw++g+dipf+pnkr+gg+++g kiapiffnt+edsgalp e+dv  l++ dvi++ypy+g ++n++t ev++ + lk+++l+de++aggripliigr+lt++ar  lgl++s +f+ + +++ e+++ ftlaqk+vg ac v g++pg+ycepk+t+vgsqdttg+mtrdelk+la+lgf+adlv+qsfchtaaypkpvdv th+tlpdfi +rggv+lrpgdg+ihswlnrmllpdtvgtggdshtrfp+gisfpagsglvafaaatg+mpldmpesvlvrfkge+q gitlrdlv+aipy aik+g ltvek+gk+n+f+g+ileiegl  lk eqafel+dasaersaagcti l++ep++eyl+sniv+l++mi+egy+d+rtl rr++ame+w++n ell+ad  aeyaa  eidl+e+kepil+apndpdd+ +ls+v+g +idevfigscmtnighfraagk+l++ + ++++rlw++pptrmde+ql+ egyy+ifg+ garte+pgcslcmgnqarv d++tv+ststrnf+nrlgkga+vyl+saelaava++lgk+p++eeyl++   k++  +d++yrylnf+el +f++
  MMETSP1174-20130828|4197_1  74 TAYNTHVAERLEMGVVPQPLDAEQTAELVELLKNPPSGEEDFLLDLFTNRIPPGVDEAAYVKAGFLAAVAKGETSCPLISPEQAVNLLGTMQGGYNIQPMVDCLD--DPDLAPKAVEKLSSTILMFDYFFDVEEKAKAgNKYAQQVLQSWADAEWFVNRPPLAEKITVTVFKVPGETNTDDLSPAQDAWSRPDIPLHAKAMLKVPREGIHDaeaQMEEAKKLGFPLAYVGDVVGTGSSRKSATNSILWYMGDDIPFIPNKRGGGVCIGSKIAPIFFNTMEDSGALPFECDVTALHMNDVIDVYPYEGFVKNHNTgEVICEMALKTDVLFDEIQAGGRIPLIIGRSLTSRARTSLGLPPSTLFRIPVSVRvEADQKFTLAQKMVGVACDVDGVLPGSYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVITHHTLPDFIRNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGGLTVEKQGKINIFSGKILEIEGLAHLKCEQAFELSDASAERSAAGCTIALDREPIVEYLESNIVMLRWMISEGYGDERTLARRVAAMEDWIQNGELLKADEGAEYAATYEIDLNELKEPILCAPNDPDDAVTLSAVEGTKIDEVFIGSCMTNIGHFRAAGKLLDQFEgQLDTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARVGDKTTVVSTSTRNFPNRLGKGANVYLASAELAAVASILGKLPSREEYLSFQ-GKLAGDRDEVYRYLNFDELPEFTD 919
                 589******************************************************************************************************..9******************************9****************************************************************988876544449*************************************************************************************************999*************************************************9887538899*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************9887**************************************************************************************************986.5789999************99985 PP

>> TIGR02086  IPMI_arch: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   1.9e-48   8.6e-46       2     408 ..     448     887 ..     447     890 .. 0.87

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 1.9e-48
   TIGR02086   2 tlaekilsekvGke.vkaGeivevkvDlvmvhDgtgplvikalrelgakvekkekivlvfDhvvPaptveaaelqkeirefakelgikvfdvgeGichqvlvekgyakpgkvvvgaDshtttsGalgafatGlGatDvalalatGktWlkvPesikveleGkleekvtakDvilei.vkelgadgat...........ykaieftgeeiealsldeRltlsnlaveagakaglvepdee.tleylkkrrge............................frilkadedakyeeeieidlsel.eplvavPhsvdnvkeveevegteidqvfiGsCtnGRledlkiaaeilegrevhkdvrlivvPasrkvyekaleeGlietlveaGaiiltpgCGPClGahlGvladgevivsttnRnfkGRmGspkaeiYLasPavaavsaveGeitd 408
                 tla+k++  ++  + v +G   e k+  v  +D+tgp++  +l++l+   ++ + ++  f h++  p+     +++++ +f ++ g      g+Gi+h  l       p +v  g+Dsht    +++ f    G+  va+a+atG + l +Pes+ v ++G+++e +t +D++  i  + +++ g+t           +k +e+ g    +l+ ++ + ls+ + e  a    +  d+e ++eyl+++                                ++lkade+a+y+  +eidl+el ep   +P+++d+  +++ vegt+id+vfiGsC    +  +++a ++l++ e + d rl ++P  r    + + eG+ +++ ++Ga    pgC  C+G+   v +d+ ++vst+ Rnf  R+G+  a++YLas ++aav+++ G++  
  MMETSP1174-20130828|4197_1 448 TLAQKMVGVACDVDgVLPGSYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVITHHTLPDFIRNRGGVSLRPGDGIIHSWLNRM--LLPDTVGTGGDSHTRFPIGIS-F--PAGSGLVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIpYQAIKEGGLTvekqgkinifsGKILEIEGLA--HLKCEQAFELSDASAERSAAGCTIALDREpIVEYLESNIVMlrwmisegygdertlarrvaamedwiqnGELLKADEGAEYAATYEIDLNELkEPILCAPNDPDDAVTLSAVEGTKIDEVFIGSCMT-NIGHFRAAGKLLDQFEGQLDTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARV-GDKTTVVSTSTRNFPNRLGK-GANVYLASAELAAVASILGKLPS 887
                 67888888887777799*********************************************9988877777788999********999**********99876..99***********98776654.4..4467789**********************************987743455555554111000000004455555544..8999*************999998888766268***999877788999999*************9998776789******************9568899***************************64.5999**********************************************************98765.9******************7.689****************9866 PP

>> TIGR01343  hacA_fam: homoaconitate hydratase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.0   2.8e-46   1.3e-43       1     408 [.     448     885 ..     448     889 .. 0.87

  Alignments for each domain:
  == domain 1    score: 147.0 bits;  conditional E-value: 2.8e-46
   TIGR01343   1 tiaekiLakksgk.evvaGdlivaevdlvlvhditaplaikaleelgidkvfdpekivivvdhavPaktikaaeaqklvrefvkkkGikyfydvgeGiahqvlaekglvkPgelvvgadshtctyGalgafatGvGstdlalaiatGkvWlkvPesikvkltGklkpgvtakdvvLev....ikeiGvdGatykave.feg.....etvkkldveerltlanlaieaGgktGiiead.ektleylkerake...........................kakvvksdedaeyakeveidvskl.epvvavPhevdnvkevsevegievdqvfiGsCtnGrledLreaakilkgrkvaedvrliviPaskkvykqalkeGlieifveaGavvstpgCgpClGahqGvLaegevCistsnrnfkGrmGdkeaeiyLasPavaaasavkGri 408
                 t+a+k++  + +   v +G   + ++  v  +d+t+p++  +l++l+    f+++ ++  + h++   +     +++++ +f+++ G       g+Gi+h  l+    + P+++  g+dsht    ++ +f +G  s  +a a+atG + l +Pes+ v+++G++++g+t +d+v  +    ike G    +   ++ f+g     e + +l+ e+ + l++ + e  +    i+ d e ++eyl+ +                              + + +k+de+aeya  +eid+++l ep +++P+ +d++  +s veg+++d+vfiGsC    +  +r+a k+l + + + d+rl + P ++    q   eG  +if + Ga    pgC+ C+G++  v ++    +sts rnf  r+G+  a++yLas  +aa++++ G++
  MMETSP1174-20130828|4197_1 448 TLAQKMVGVACDVdGVLPGSYCEPKMTSVGSQDTTGPMTRDELKDLA-CLGFSADLVMQSFCHTAAYPKPVDVITHHTLPDFIRNRGGV-SLRPGDGIIHSWLNRM--LLPDTVGTGGDSHTRFPIGI-SFPAG--SGLVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIpyqaIKEGGLTVEKQGKINiFSGkileiEGLAHLKCEQAFELSDASAERSAAGCTIALDrEPIVEYLESNIVMlrwmisegygdertlarrvaamedwiqNGELLKADEGAEYAATYEIDLNELkEPILCAPNDPDDAVTLSAVEGTKIDEVFIGSCMT-NIGHFRAAGKLLDQFEGQLDTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARV-GDKTTVVSTSTRNFPNRLGK-GANVYLASAELAAVASILGKL 885
                 789999999998878*****************************999.78899**********98876666666788899999987655.3789********9766..99***********9877666.46665..55799*********************************987632225655544443334441333111113346899*************9999888888736699***999555579999*****************999888999******************9558899***************************64.59************************************************************98766.899999*************6.79***************9987 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   6.6e-13     3e-10      17     184 ..     464     627 ..     448     648 .. 0.81
   2 !   76.4   0.0   6.8e-25   3.1e-22     232     406 ..     708     885 ..     699     898 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 6.6e-13
   TIGR01342  17 epgeeiaikidqtlsqdatgtmvylefealevdevktelavsyidhqtlqtdfknaddhkylrsvakkygiylskpgngichqvhkerfakpgktllgsdshtptagglgqlaigaggldvavamageayylkmpkvvnvrlkgklpewvtakdvilellrrlsvkgg 184
                  pg     k+    sqd+tg m+  e++ l      ++l ++   h        +   h+ l    ++ g    +pg+gi h   ++r+  p     g dsht  + g+   a g+g   va a a +++ l+mp+ v vr+kg++ e +t +d++  +  +    gg
  MMETSP1174-20130828|4197_1 464 LPGSYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVITHHTLPDFIRNRGGVSLRPGDGIIHS-WLNRMLLPDTVGTGGDSHTRFPIGISFPA-GSG--LVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGG 627
                 47777778888889*************************99877777766666677778888888888888888********7.68999*****************9997543.555..4666667778889**********************99776555555555 PP

  == domain 2    score: 76.4 bits;  conditional E-value: 6.8e-25
   TIGR01342 232 aafdreeefve....lladadaeydevivvdlsel.epliaepsspdnvvpvrevegikveqvvvgsctnsayvdllraakllegrevskdvvlivapgskqalellaregallellkagvrileaacgacigigfvpasdsvslrsfnrnfkgragieddkvylaspevavaaaiagei 406
                 ++    e++++    l+ad  aey+   ++dl el ep++  p+ pd+ v +  veg k+++v +gsc          a kll+  e + d+ l +ap ++     l+ eg+   + + g+r     c  c+g       ++  + +  rnf  r g   ++vylas e a+ a+i g++
  MMETSP1174-20130828|4197_1 708 RRVAAMEDWIQngelLKADEGAEYAATYEIDLNELkEPILCAPNDPDDAVTLSAVEGTKIDEVFIGSCMT-NIGHFRAAGKLLDQFEGQLDTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARVGDKTTVVSTSTRNFPNRLGK-GANVYLASAELAAVASILGKL 885
                 566667788755555799****************978*******************************64.356678899*****************************************************998888888899999*********5.689***********9999975 PP

>> TIGR02083  LEU2: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   4.6e-05     0.021     116     228 ..     557     676 ..     532     690 .. 0.65
   2 !   77.5   0.0   4.6e-25   2.1e-22     242     417 ..     718     889 ..     702     891 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.6e-05
   TIGR02083 116 liigadshtctygalgafatgvgstdlavamatgkawfkvpeaikfvlkgklkdyvsakdlilkiigkigvdgaly.....kslefsg.....eglkelsvddrltianmaieagaktgifev 228
                 +  g dsht     +g+ +   gs  +a a atg + + +pe++ + +kg++++ ++ +dl+  i  +   +g l      k   fsg     egl +l  ++ + +++ + e  a    +  
  MMETSP1174-20130828|4197_1 557 VGTGGDSHTRF--PIGI-SFPAGSGLVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGGLTvekqgKINIFSGkileiEGLAHLKCEQAFELSDASAERSAAGCTIAL 676
                 55688888753..3442.4445677789999******************************97764333223322111111444466622222344456666666666666666555555555 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 4.6e-25
   TIGR02083 242 relkiykadedakyervieidlsele.pqvafphlpentkeideaekeeikidqvvigsctngrledlrlaaeilkgkkvakevrliilpasqkvylealkeglleifieagavvstptcgpclgghmgilaegeravsttnrnfvgrmghpksevylaspavaaasaikgkiaspe 417
                 ++ ++ kade a+y    eidl+el+ p +  p  p+++++++ +e    kid+v igsc    +  +r a ++l++ + + ++rl i p ++    +   eg+ +if   ga    p c  c+g    +  +   +vst+ rnf  r+g+  ++vylas ++aa ++i gk+ s e
  MMETSP1174-20130828|4197_1 718 QNGELLKADEGAEYAATYEIDLNELKePILCAPNDPDDAVTLSAVE--GTKIDEVFIGSCMT-NIGHFRAAGKLLDQFEGQLDTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARV-GDKTTVVSTSTRNFPNRLGKG-ANVYLASAELAAVASILGKLPSRE 889
                 5567899*****************97266789************99..99**********75.699**********************************************************998776.677889*************85.79*****************98866 PP

>> TIGR00170  leuC: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.3e-06    0.0006     116     297 ..     550     756 ..     537     762 .. 0.67
   2 !   58.6   0.0     2e-19   9.1e-17     334     460 ..     762     885 ..     757     888 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
   TIGR00170 116 gltlpgktivcgdshtathgafgalafgigtsevehvlatqtlkqaraktlkievegklakgitakdiilaiigkigvagg.....tgyvvefageair.....dlsmeermtvcnmaieagakagliapd.ettfeyv................kdrkyapkgkefekavaywktlktdegakfdkvvtleakdis.pqvtwgtnpgqv 297
                  + lp +    gdsht     +  ++f  g+  v    at t+  + + ++ ++ +g++++git +d++ ai  +   +gg      g +  f+g++++     +l  e+ + + + + e  a    ia d e   ey+                 +r++a + + +e+ +++   lk+dega++  +  ++ +++  p +    +p+++
  MMETSP1174-20130828|4197_1 550 RMLLPDTVGTGGDSHTRFP--I-GISFPAGSGLVAFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGGltvekQGKINIFSGKILEieglaHLKCEQAFELSDASAERSAAGCTIALDrEPIVEYLesnivmlrwmisegygDERTLARRVAAMEDWIQNGELLKADEGAEYAATYEIDLNELKePILCAPNDPDDA 756
                 467888888999**99753..3.489********************************************99766666665322224677778886543222226778888888888888888888888773334444311111111111111114667777777777777777888888888888888888777752444445555555 PP

  == domain 2    score: 58.6 bits;  conditional E-value: 2e-19
   TIGR00170 334 lkdikvdkvfigsctnsriedlraaaevvkgkkvadnvklalvvpgsglvkkqaekegldkifleagfewreagcslclgmnndvldeyercastsnrnfegrqgkgarthlvspamaaaaavagkf 460
                 ++  k+d+vfigsc  + i  +raa +++       + +   + p + +  +q  +eg   if   g+    +gcslc+g n+ ++++     sts rnf  r gkga  +l s  +aa+a++ gk+
  MMETSP1174-20130828|4197_1 762 VEGTKIDEVFIGSCM-TNIGHFRAAGKLLDQFEGQLDTR-LWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMG-NQARVGDKTTVVSTSTRNFPNRLGKGANVYLASAELAAVASILGKL 885
                 67789*********7.469*********98777777777.78899999******************************99.8999***************************************985 PP

>> TIGR00139  h_aconitase: homoaconitase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.54   2.5e+02     542     605 ..     248     318 ..     239     323 .. 0.63
   2 !   50.4   0.0   5.4e-17   2.5e-14     114     462 ..     553     896 ..     522     907 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.54
   TIGR00139 542 vntdgiypgkyty.qddvp..kekmarvcmen.ydaefst..kvkeg.dilvsgfnfgtgssreqaatall 605
                  ntd + p + ++ + d+p   + m +v  e  +dae +     k g  +   g   gtgssr+ a+ ++l
  MMETSP1174-20130828|4197_1 248 TNTDDLSPAQDAWsRPDIPlhAKAMLKVPREGiHDAEAQMeeAKKLGfPLAYVGDVVGTGSSRKSATNSIL 318
                 577777777766624577722345666766642466654310334442345578889*******9999887 PP

  == domain 2    score: 50.4 bits;  conditional E-value: 5.4e-17
   TIGR00139 114 fpltlavasdshsntygglgs.lgtpivrtdaaavwatgktwwqippvakvelkgvlpqgvsgkdvivalcglfnkddvln....haie.ftgs...eeslralsvdtrltianmttewgalsglfpvdkv.lkdwlknkatlaklgladgpfktrkaerfthplleekakip..lkadkdakyakklildlasls.pyvsgpnsvkvattlkeleaqdikvdkaylvsctnsrlsdlaaaadvvkeaaeknggkvnkvagvkfyvaaasieeeldaeksgdwekllkagaiqlpagcgpciglgagllepgevgisasnrnfkgrmgskeakaylaspevvaasallgklsspaevlsteg 462
                  p t+    dsh+    g+    g+ +v    a   atg    ++p    v +kg + +g++ +d++ a+     k+  l       i+ f+g     e l  l  ++ + +++ ++e  a    + +d+  ++++l ++ ++ +  +++g   +r+  r   +++e+ +++   lkad +a+ya    +dl  l  p +  pn    a tl  +e    k+d  ++ sc    +  ++aa +++ +      g++      ++++a  +   e++   +g +  + + ga     gc  c+g  a + +   v +s+s rnf  r+g k a  ylas e+ a +++lgkl s  e+ls +g
  MMETSP1174-20130828|4197_1 553 LPDTVGTGGDSHTRFPIGISFpAGSGLV----AFAAATGTMPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGGLTvekqGKINiFSGKileIEGLAHLKCEQAFELSDASAERSAAGCTIALDREpIVEYLESNIVMLRWMISEGYGDERTLAR-RVAAMEDWIQNGelLKADEGAEYAATYEIDLNELKePILCAPNDPDDAVTLSAVEG--TKIDEVFIGSCMT-NIGHFRAAGKLLDQFE----GQL----DTRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARVGDKTTV-VSTSTRNFPNRLG-KGANVYLASAELAAVASILGKLPSREEYLSFQG 896
                 6777777777777777666531344444....444589*****************************9997655555444311111232266642225889999*************************8538899999999999899999888888777.688999999875449******************97367899*******99998875..699********75.5889999999986543....333....4789***************************99999*******98887776665.9***********9.689*************************99886 PP

>> TIGR01340  aconitase_mito: aconitate hydratase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.6e-12   7.4e-10     130     472 ..     538     885 ..     528     890 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.6e-12
   TIGR01340 130 kpGsGiihqivlenyavpGllmlGtdshtpnaGGlaaiaiGvGGadavdvlagipwelkapkvlGvkltGklsgwtspkdvilklaglltvkGG.....tGaiveyfG.....eGveslsctGmaticnmGaeiGattslfpfn.easkdylkat...nraeiaeeak.............vakdkaellkadkdaeydelieidlskl.ephvnGpftpdlstpiskfkekvkkekwpeklkvGliGsctnssyedmsrvasivkdaekaGlkskidftvtpGseqiratlerdgilevfekaGgvvlanacGpciGqwdrkdvvkkgekntiltsynrnfrgrndanratmaflaspelvtalsvaGsl 472
                 +pG Giih   l+   +p  +  G dsht    G++  a G G   a  + +g+   l  p  + v++ G++++  + +d++  +       GG      G i  + G     eG+  l c  +  + +  ae  a+  ++  + e   +yl++     r  i+e                   ++ ellkad++aey    eidl++l ep +  p  pd ++ +s  + +        k+   +iGsc         r+a    d  +  l   + + ++p +    a l  +g   +f ++G+      c  c+G+  r      g+k t++++  rnf  r    + +  +las el +  s+ G+l
  MMETSP1174-20130828|4197_1 538 RPGDGIIHSW-LNRMLLPDTVGTGGDSHTRFPIGISFPA-GSGL-VAFAAATGT-MPLDMPESVLVRFKGEMQEGITLRDLVHAIPYQAIKEGGltvekQGKINIFSGkileiEGLAHLKCEQAFELSDASAERSAAGCTIALDrEPIVEYLESNivmLRWMISEGYGdertlarrvaameDWIQNGELLKADEGAEYAATYEIDLNELkEPILCAPNDPDDAVTLSAVEGT--------KIDEVFIGSCMTNI--GHFRAAGKLLDQFEGQLD--TRLWIAPPTRMDEAQLTAEGYYSIFGRVGARTEMPGCSLCMGNQARV-----GDKTTVVSTSTRNFPNRLG--KGANVYLASAELAAVASILGKL 885
                 7*******85.89999***************99997654.5554.455454443.45889*********************9887544333333222213455555552222258999***************99998888775266889999852223555555433566777787554433456789*******************978999*************88754........566678****6432..223555544455555554..56799*************************************87775.....5899**********99875..4566899****99998888875 PP

>> TIGR01341  aconitase_1: aconitate hydratase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.4e-10   1.1e-07     186     375 ..     552     765 ..     545     787 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.4e-10
   TIGR01341 186 aypdsl.vGtdshttminGlGvlGwGvGGieaeaallGqpvslsvpeviGvkltGklreGvtatdlvltvt.ellrkkgv.v...gkfveffG.....eglkelsladratianmapeyGataaffpiddv.tlqylr.........lt.grded.....kvelvekylkaqelfvddseepkytdvveldlsdv.easvaGpkrpqdrvalkevkaa 375
                 + pd++  G dsht    G+        G+ a aa  G  + l +pe + v+++G+++eG+t  dlv  +  + +++ g+ v   gk   f G     egl++l   +   +++ + e  a+ +   +d +  ++yl+         ++ g  ++     +v  +e +++  el + d e ++y+ + e+dl+++ e+ ++ p+ p+d v+l++v+ +
  MMETSP1174-20130828|4197_1 552 LLPDTVgTGGDSHTRFPIGI--SFPAGSGLVAFAAATGT-MPLDMPESVLVRFKGEMQEGITLRDLVHAIPyQAIKEGGLtVekqGKINIFSGkileiEGLAHLKCEQAFELSDASAERSAAGCTIALDREpIVEYLEsnivmlrwmISeGYGDErtlarRVAAMEDWIQNGELLKAD-EGAEYAATYEIDLNELkEPILCAPNDPDDAVTLSAVEGT 765
                 6678775688****996555..54555678888888885.78999***********************9963666666542422255666777333335777888888889*******999888888887625688873322222221223322222222578899999999999866.789************946899*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.64
# Mc/sec: 1915.90
//
Query:       MMETSP1174-20130828|4208_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.26s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 179.99
//
Query:       MMETSP1174-20130828|4211_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|4215_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 604.51
//
Query:       MMETSP1174-20130828|4217_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.67
# Mc/sec: 537.81
//
Query:       MMETSP1174-20130828|4218_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 541.85
//
Query:       MMETSP1174-20130828|4220_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 775.44
//
Query:       MMETSP1174-20130828|4221_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|4224_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 1263.73
//
Query:       MMETSP1174-20130828|4226_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.62
# Mc/sec: 881.35
//
Query:       MMETSP1174-20130828|4230_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2514.93
//
Query:       MMETSP1174-20130828|4233_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 760.67
//
Query:       MMETSP1174-20130828|4235_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-18   63.2   3.8    7.4e-18   62.3   2.6    1.3  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    8.1e-06   22.1   0.0    1.5e-05   21.2   0.0    1.3  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
      2e-05   20.5   6.3    2.9e-05   20.0   4.4    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00056   17.5   3.3    0.00096   16.7   0.4    2.2  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   2.6   7.2e-21   7.4e-18     122     221 ..      21     120 ..      10     144 .. 0.95

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 7.2e-21
   TIGR00990 122 erkkyaaklkekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltass 221
                  +++ a++lk++Gn a  + +  +a+ ly++al l e+ v y nr+  y     +   +ed+  aleldp y kal rra+ +  l+ky+ al dl +++
  MMETSP1174-20130828|4235_1  21 SKEARALALKDEGNAALASGHPSQAVALYTHALALHENAVLYGNRSMAYLKQESYGLAIEDADLALELDPSYLKALYRRASGNFALSKYKVALKDLKTVC 120
                 68899*******************************************************************************************9888 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.5e-08   1.5e-05     179     285 ..     232     326 ..     184     331 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.5e-08
   TIGR04075 179 kGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlr.l.vmsmvkagaalcvpGnheekllrklrGrkvklthGlaetle 285
                 +  f + GdvhG + +l ++++  G              ++ e+r  +f Gd+vdrG  s++v+  l   ++v     +  +Gnhe+k + k+ G + +++h l++  +
  MMETSP1174-20130828|4235_1 232 SAVFTVCGDVHGQFYDLMNIFATNG--------------EPSESRPYLFNGDFVDRGSFSVEVILtLfAYKIVYPLGLFMTRGNHESKSMNKIYGFEGEVKHKLDMDTA 326
                 5557777777777777766655433..............46789999***************975132567899999999*******************9999987655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   4.4   2.8e-08   2.9e-05     107     227 ..      10     127 ..       2     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.8e-08
   TIGR02917 107 qkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapk.sleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnai 227
                 ++ +d+    + +++e +a +l   g+AaL++g++ +A + +  Ala  ++  l+ + + A+l+  ++ +  a + +d +L+ dp+  +Al  +++  +++++++ Al++++ + ++ p+++
  MMETSP1174-20130828|4235_1  10 EQGVDQED--DIQSKEARALALKDEGNAALASGHPSQAVALYTHALALHENaVLYGNRSMAYLK--QESYGLAIEDADLALELDPSYLKALYRRASGNFALSKYKVALKDLKTVCKMCPKDK 127
                 55555553..44599999999999**********************987651689999999986..6678889******************************************9999876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.098     1e+02      61      84 ..      35      58 ..      29      62 .. 0.83
   2 !   16.7   0.4   9.3e-07   0.00096      60     120 ..      67     127 ..      65     144 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.098
   TIGR02552 61 clqalkeyeeAiaaYalaaaldld 84
                +  a ++ ++A+a Y++a+al ++
  MMETSP1174-20130828|4235_1 35 AALASGHPSQAVALYTHALALHEN 58
                5667789999********999865 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 9.3e-07
   TIGR02552  60 aclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 +++ +++ y  Ai+  +la+ ld++  +++y++a   +al +++ Alk+Lk++ +++ +++
  MMETSP1174-20130828|4235_1  67 MAYLKQESYGLAIEDADLALELDPSYLKALYRRASGNFALSKYKVALKDLKTVCKMCPKDK 127
                 56788999*************************************************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.59
# Mc/sec: 1105.13
//
Query:       MMETSP1174-20130828|4237_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0092   12.6   1.7     0.0095   12.6   1.2    1.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.2   2.3e-06    0.0095      93     143 ..       6      49 ..       1      52 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-06
   TIGR02927  93 peeepaeeppkeepkkaaeapaeaaaqaqgsgeatevempelGesvteGtv 143
                 +e  p++ep  e p++  ++pa       g +++t+v m el es  +G v
  MMETSP1174-20130828|4237_1   6 KEATPEPEPVSEIPQAVEKSPA-------GECDSTKVDMKELTESTLQGVV 49 
                 4556677777777777777777.......999**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 213.51
//
Query:       MMETSP1174-20130828|4240_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 1361.57
//
Query:       MMETSP1174-20130828|4242_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 649.17
//
Query:       MMETSP1174-20130828|4245_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 1659.76
//
Query:       MMETSP1174-20130828|4247_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1813.11
//
Query:       MMETSP1174-20130828|4254_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1174-20130828|4261_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 447.06
//
Query:       MMETSP1174-20130828|4260_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.88
# Mc/sec: 1546.37
//
Query:       MMETSP1174-20130828|4264_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|4265_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 670.37
//
Query:       MMETSP1174-20130828|4268_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 476.63
//
Query:       MMETSP1174-20130828|4269_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.3   0.0      0.017   12.1   0.0    1.0  1  TIGR01789 lycopene_cycl: lycopene cyclase


Domain annotation for each model (and alignments):
>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-06     0.017      85     156 ..      18      93 ..      10      99 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-06
   TIGR01789  85 svtstrlreeleqklpervlldrkavevdadavdlengrvisasavidargfkPsaalk....vGfqaflGrevrl 156
                 s   +rl++++   lp+r++   + + v+ ++v+l +  + s+ ++id  gf+    ++    vG qa++ ++ ++
  MMETSP1174-20130828|4269_1  18 SPVHNRLANTMLSDLPDRIVQLSEEARVTPRQVTLVDDATSSSDCIIDLEGFEEEEDVSttrlVGCQAMVQLHQKM 93 
                 55678999************9999***************************9876554322226778777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 486.71
//
Query:       MMETSP1174-20130828|4275_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.25s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 466.79
//
Query:       MMETSP1174-20130828|4278_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   10.5   1.6       0.22    9.0   0.4    2.1  2  TIGR03053 PS_I_psaM: photosystem I reaction center subunit XII


Domain annotation for each model (and alignments):
>> TIGR03053  PS_I_psaM: photosystem I reaction center subunit XII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.058   2.4e+02       2      10 ..      47      55 ..      47      55 .. 0.91
   2 ?    9.0   0.4   5.3e-05      0.22       2      15 ..     101     114 ..     101     116 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.058
   TIGR03053  2 sdsQifiAL 10
                sd ++++AL
  MMETSP1174-20130828|4278_1 47 SDVKVAVAL 55
                7999****9 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 5.3e-05
   TIGR03053   2 sdsQifiALviALi 15 
                 s+ Q f+ALviAL+
  MMETSP1174-20130828|4278_1 101 STLQPFVALVIALV 114
                 56677********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 524.74
//
Query:       MMETSP1174-20130828|4284_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.5   0.1      0.013   12.3   0.0    1.0  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.048    9.7   0.1       0.11    8.5   0.0    1.5  2  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.3e-06     0.013     337     420 ..      22     102 ..       3     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.3e-06
   TIGR04095 337 sgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspGkeraeiyDfivvPp.keadeledkefeversllkr 420
                 +++l  +   r L  G DvP++   +     +   + +q   R  R spGk++     +i vP  ++ ++ +d+++ v r + ++
  MMETSP1174-20130828|4284_1  22 KDDLRLITNCRVLGQGTDVPSVDLVIFGDPKQSRVDIVQCMARAARVSPGKSYG----YILVPVsEDGEDGHDTAVRVLRAYCEQ 102
                 5678889999************987666666777799**************966....556666344455566667777766665 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   5.2e-05      0.11     482     550 ..       7      76 ..       2      84 .. 0.74
   2 ?   -1.6   0.0     0.061   1.2e+02     368     386 ..     118     136 .]     112     136 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5.2e-05
   TIGR00631 482 rveiirdLrk......gefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvily 550
                 r  ++++Lr+      +++ ++    +L +G D+P v lv   D       +s+  ++q + raar + Gk + y
  MMETSP1174-20130828|4284_1   7 RHAVLSQLRRvegqgkDDLRLITNCRVLGQGTDVPSVDLVIFGDPK-----QSRVDIVQCMARAARVSPGKSYGY 76 
                 66666777642222112344566778999***********877764.....47789************9998766 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.061
   TIGR00631 368 aldnrPlkfeefeekvkqv 386
                 a+  rPl+fee+ e +++v
  MMETSP1174-20130828|4284_1 118 ARIGRPLSFEEWPEAIQRV 136
                 6667********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 485.15
//
Query:       MMETSP1174-20130828|4286_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.89
# Mc/sec: 72.67
//
Query:       MMETSP1174-20130828|4285_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 757.99
//
Query:       MMETSP1174-20130828|4287_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.7   0.6      0.012   13.5   0.4    1.0  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   2.8e-06     0.012      71     119 ..      14      62 ..       8      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-06
   TIGR01416  71 tkeeleelkalkkkeLkdpnseaeqtdearelrsgkeewlvvigiCtHL 119
                 t+ +++e+++ k++eL+     +++++e+re+++++e+++ +++iC+HL
  MMETSP1174-20130828|4287_1  14 TRMQIAEENERKEAELEAIRRVNKAENEKREAKENEEKMAHALKICNHL 62 
                 5567888888888889888555888888899*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       397  (0.0967821); expected 82.0 (0.02)
Passed bias filter:                      274  (0.0667967); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.27s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|4288_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|4289_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|4290_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 313.92
//
Query:       MMETSP1174-20130828|4292_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|4293_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 125.04
//
Query:       MMETSP1174-20130828|4294_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.3   0.0      0.046   11.3   0.0    1.5  1  TIGR03874 4cys_cytochr: c-type cytochrome, methanol metabolism-related


Domain annotation for each model (and alignments):
>> TIGR03874  4cys_cytochr: c-type cytochrome, methanol metabolism-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.046      67     133 ..      82     148 ..      60     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
   TIGR03874  67 rlsyeefldvvanGrkevsaaeesvmpafGenknvacylddlyvylraraadalgrarpakkedkse 133
                  ++y+e l    +   e s+++ s+ pa+ + + ++ y +dly   r  +   ++  rp+    +++
  MMETSP1174-20130828|4294_1  82 AIDYNEKLSHDNDNESESSSTTPSLSPAYQKAHTLIAYFNDLYEQARPAGLSLWDARRPTTTTPHDD 148
                 57888888888888889999999************************99**********98665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1135.80
//
Query:       MMETSP1174-20130828|4301_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-26   89.2   1.6      5e-23   79.5   0.1    2.7  3  TIGR00229 sensory_box: PAS domain S-box protein
    2.5e-06   24.7   0.1    2.8e-06   24.4   0.1    1.0  1  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR
     0.0018   16.2   0.0     0.0023   15.8   0.0    1.3  1  TIGR02373 photo_yellow: photoactive yellow protein
  ------ inclusion threshold ------
      0.016   11.9   0.1        1.7    5.2   0.0    2.2  2  TIGR00877 purD: phosphoribosylamine--glycine ligase


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00013      0.13     104     125 ..       2      23 ..       1      24 [. 0.91
   2 !   79.5   0.1   4.8e-26     5e-23       3     125 ..      20     143 ..      19     144 .. 0.95
   3 ?    2.8   0.0     0.026        27       3      28 ..     140     165 ..     139     166 .] 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00013
   TIGR00229 104 ggelgvvgivrDIterkeaeee 125
                 g++ gvvgi +DIter  +e+e
  MMETSP1174-20130828|4301_1   2 GRVIGVVGIGQDITERISQEQE 23 
                 7889**************9997 PP

  == domain 2    score: 79.5 bits;  conditional E-value: 4.8e-26
   TIGR00229   3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIterkeaeee 125
                 +e+ y  ++++++++i+ vd +G+++ +N+a+  ++GY+ e+ +Gr++ + +i++++r+ v+ ++ ++l+g  e+   e+ + +++G ++ + ++ ++ rd +g++ gvvgi +DIt r  +e+e
  MMETSP1174-20130828|4301_1  20 QEQEYIRLIDTANAPIFGVDVNGKVTVWNKAASNVTGYTTEDTMGRHLVQdFISPDYRSSVQNVLDKALQGS-ETANFEFPLMTRNGARVEILLNATSRRDvEGRVIGVVGIGQDITARISQEQE 143
                 6889999*******************************************9*******************65.7777777788*************************************99997 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.026
   TIGR00229   3 seeryrailesspdaiivvdeeGnil 28 
                 +e+ y  ++++++++i+ vd +G+++
  MMETSP1174-20130828|4301_1 140 QEQEYIRLIDTANAPIFGVDVNGKVT 165
                 6889999****************985 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   2.8e-09   2.8e-06     124     274 ..      13     164 ..       7     166 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.8e-09
   TIGR02040 124 DYwklReiEtRYRlllevsseavllvdvstgrileansaAaalLgaegqslvGrelaqeleere.reeleellrevratgkaaevriel.aesakellv.vvslfrqdseslfLvrlspvgasaavedvlsenlaklveeapDaivvvDadGri 274
                 D  +    E  Y +l++ ++ ++  vdv +g++   n+aA+ + g + ++ +Gr+l q++ + + r +++++l +  +  ++a+ +  l +++ +++ + +  + r d e + ++ +  +g++++    +++++ +l+++a   i  vD +G++
  MMETSP1174-20130828|4301_1  13 DITERISQEQEYIRLIDTANAPIFGVDV-NGKVTVWNKAASNVTGYTTEDTMGRHLVQDFISPDyRSSVQNVLDKALQGSETANFEFPLmTRNGARVEIlLNATSRRDVEGR-VIGVVGIGQDITARISQEQEYIRLIDTANAPIFGVDVNGKV 164
                 55555677999****************8.689999************************88766377899999887766677777654413444555550556666666665.789999******99999999*******************98 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-06    0.0023      24      94 ..      30      99 ..       7     127 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.3e-06
   TIGR02373 24 alafGaiqldesGrilkynkaegelaGrdPekviGknffkevaPctdskefsGrfkegvasGdlnamldyv 94
                +       +d +G+++ +nka ++++G + e+ +G+++ ++     d +    + ++   +G+  a +++ 
  MMETSP1174-20130828|4301_1 30 TANAPIFGVDVNGKVTVWNKAASNVTGYTTEDTMGRHLVQDFISP-DYRSSVQNVLDKALQGSETANFEFP 99
                444445569*****************************9996432.4444455666666677777777765 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0016       1.7     382     410 ..       2      30 ..       1      43 [. 0.88
   2 ?    4.8   0.0    0.0021       2.2     381     410 ..     121     150 ..     104     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0016
   TIGR00877 382 gRvlavvalgksleeArekayeavekikf 410
                 gRv+ vv++g++++e  ++ +e ++ i+ 
  MMETSP1174-20130828|4301_1   2 GRVIGVVGIGQDITERISQEQEYIRLIDT 30 
                 9**************99999888888776 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0021
   TIGR00877 381 ggRvlavvalgksleeArekayeavekikf 410
                  gRv+ vv++g+++++  ++ +e ++ i+ 
  MMETSP1174-20130828|4301_1 121 EGRVIGVVGIGQDITARISQEQEYIRLIDT 150
                 59************9988888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 547.75
//
Query:       MMETSP1174-20130828|4303_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|4302_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 1444.81
//
Query:       MMETSP1174-20130828|4304_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    3.2   6.4        3.9    2.8   4.4    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   4.4   0.00096       3.9     970     995 ..     119     144 ..     101     176 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.00096
   TIGR00927 970 gsdGGdseeeeeeeeeeeeeeeeeee 995
                 + d  d ++e+++++++++e++++++
  MMETSP1174-20130828|4304_1 119 DDDDDDDDDEDDDDDDDDDEDDDDDD 144
                 11222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 675.29
//
Query:       MMETSP1174-20130828|4306_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       620  (0.151146); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 238.60
//
Query:       MMETSP1174-20130828|4308_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 801.36
//
Query:       MMETSP1174-20130828|4312_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.24s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 867.83
//
Query:       MMETSP1174-20130828|4313_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|4316_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|4317_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 755.27
//
Query:       MMETSP1174-20130828|4318_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   13.6   0.3     0.0035   13.6   0.2    1.4  2  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       0.2   8.1e+02     477     498 ..     164     185 ..     148     201 .. 0.53
   2 !   13.6   0.2   8.4e-07    0.0035     438     519 ..     261     341 ..     242     371 .. 0.64

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.2
   TIGR00811 477 ketfsvrrerilknikelkell 498
                 +e  +   e++  n+ke++e +
  MMETSP1174-20130828|4318_1 164 SEKHTREMEKVQANLKEVHEKA 185
                 3444444455555555444433 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8.4e-07
   TIGR00811 438 raagekpdhsvhagreftlgtnvlsdrknwe...ealanlsvketfsvrrerilknikelkelleeassdeekaafeaalalevk 519
                 ra     ++sv   r  t g+ vl     w    + +     ++tf+  rer++k ++e+++l+ ++  + ek+af +a+    +
  MMETSP1174-20130828|4318_1 261 RAGMDETEQSVRRAR--TEGA-VLLMFYRWRshvDRVIRAEEANTFASERERLVKTLNEMRDLMTQSFRA-EKKAFATAIVQGER 341
                 555555555555444..3333.23233334400034444556789*******************998765.67778887765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 968.75
//
Query:       MMETSP1174-20130828|4322_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1174-20130828|4323_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 769.31
//
Query:       MMETSP1174-20130828|4324_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 538.66
//
Query:       MMETSP1174-20130828|4326_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.26s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 220.94
//
Query:       MMETSP1174-20130828|4327_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1220.01
//
Query:       MMETSP1174-20130828|4328_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|4329_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1096.52
//
Query:       MMETSP1174-20130828|4330_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 768.98
//
Query:       MMETSP1174-20130828|4333_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 550.71
//
Query:       MMETSP1174-20130828|4331_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 2337.48
//
Query:       MMETSP1174-20130828|4334_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 878.55
//
Query:       MMETSP1174-20130828|4336_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-11   40.8   0.0    5.2e-11   40.7   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.3e-14   5.2e-11     151     217 ..      33      99 ..       8     113 .] 0.86

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 1.3e-14
   TIGR02933 151 rlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlC 217
                  l ++  +fa+la++hs CP+   gG LG   +G + p  d+  ++   g +  +++++ G+hl+l 
  MMETSP1174-20130828|4336_1  33 MLDSGSTTFADLAKQHSTCPSGKTGGSLGSFRPGQMVPAFDKVCWEAPVGVVQGPVQTQYGYHLILV 99 
                 4788999********************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 451.96
//
Query:       MMETSP1174-20130828|4338_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 479.96
//
Query:       MMETSP1174-20130828|4340_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-09   31.6   6.1    1.5e-08   31.0   4.2    1.3  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   4.2   3.8e-12   1.5e-08     474     698 ..     413     633 ..     380     650 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.8e-12
   TIGR00870 474 lfafalvlswlnllyiargnqhlGplqimlgrmilrDllrFlfiylvvLlaFavalvqlykyydekklnees..slkpirceieenaystlletlleLFwa.iiGlvdl..lkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeeadeeWkfqraklvlsleeeggtlpppfslipspksfvglikliekklgkkrerrarrveevnwktierkaetls 698
                 lfa+   l   +  + +rg+  l   +  l+r  + D+  Fl++ l  ++ +++ +  ly     ++ + +   + +   +e ++     +   ++  F   ++G  d+   ++eh+  +fv++  f+++v+ ++++LLN +IA++g+++++++e+   e  + ra l+l++   +g ++     i +   +++ i+   ++ + + + ++ r  + + +  +++ e+++
  MMETSP1174-20130828|4340_1 413 LFAITTFLLLGKAHHVVRGFDELAWIVAVLERNFI-DMRYFLVVLLASIFFYSMSFTALYIGTTVNEDDVDDdlAAHLVTSESSN----AIWMPFFMIFNMgVLG--DFssGAFEHSVNKFVTIFFFLVFVIHTTVILLNGIIALLGDSFEQVQERKAAEMNINRALLILDYLYVLGESKS--DEIENATTTLYRITPHSMEGTTNGDEWRGRMSAMMSMHHKTRDEIKK 633
                 66666666666667889999999999999999999.*999999999999999999999886655555554441044444443333....3444444444331333..335589***********************************************************998887664..55555566666444444444445555666666555544444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.48
# Mc/sec: 1790.10
//
Query:       MMETSP1174-20130828|4343_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-18   62.1   1.0    9.3e-18   62.0   0.7    1.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.4e-07   29.1   1.2    2.4e-07   28.4   0.8    1.3  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.6e-06   23.4   1.4    2.9e-06   23.3   1.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0026   13.8   1.7     0.0028   13.7   1.2    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0058   14.0   0.7      0.009   13.4   0.5    1.4  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.7   1.1e-20   9.3e-18     120     216 ..      11     108 ..       4     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.1e-20
   TIGR00990 120 eeerkkyaaklkekGnkayrnkdfdkaielyskalllke.dPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalld 216
                   e  + aa+ k kGn+a+++kdf  a e y+ a+ + + d  ++snr+acy ++++ e  + d+ +  +l pd++ka  r a+a   l ++ da l 
  MMETSP1174-20130828|4343_1  11 VAEATARAAEAKGKGNEAFQKKDFPSAAEAYTEAIYMVPgDASFWSNRSACYLSMGQNELALSDAERCCKLRPDWSKAYYRVATARLALKRFEDAALA 108
                 56777889***************************8776599****************************************************9764 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.8     3e-10   2.4e-07      27     129 ..      27     129 ..      21     135 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3e-10
   TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkera 129
                 +++q++++  A+++++  +++ p +a +w   +ac+  +++ e A+   +++ +l++d  +++y+ a   lal++ e+A  a +  +++++++++ ++l + a
  MMETSP1174-20130828|4343_1  27 EAFQKKDFPSAAEAYTEAIYMVPGDASFWSNRSACYLSMGQNELALSDAERCCKLRPDWSKAYYRVATARLALKRFEDAALAAFEGLKLDDKNTTLKKLMNTA 129
                 689****************************************************************************999999999999999888876655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.0   3.5e-09   2.9e-06     199     298 ..      24     123 ..      11     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.5e-09
   TIGR02917 199 kgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpal 298
                 kg+ ++ ++++  A++ay++ai + p +++   +++   l+ g+ e A ++a+   k  p  +ka y  A  ++  k+fedA  ++ + lk + ++ + +
  MMETSP1174-20130828|4343_1  24 KGNEAFQKKDFPSAAEAYTEAIYMVPGDASFWSNRSACYLSMGQNELALSDAERCCKLRPDWSKAYYRVATARLALKRFEDAALAAFEGLKLDDKNTTLK 123
                 5666778899999999999999999999999999999999999999999999999999999999999999999999999999999988888887776655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.2   3.4e-06    0.0028      99     213 ..      31     144 ..      10     147 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.4e-06
   TIGR03939  99 ekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlakq 213
                 +k++++A+e y +++   P +++ ++      + +g++e Al+ +++  +  p+  + ++  a +  a+++  da  a+ + l+l+ +n + lk+l++++++ g +a +++l ++
  MMETSP1174-20130828|4343_1  31 KKDFPSAAEAYTEAIYMVPGDASFWSNRSACYLSMGQNELALSDAERCCKLRPDWSKAYYRVATARLALKRFEDAALAAFEGLKLDDKN-TTLKKLMNTAVEQGRAAHQEELRQK 144
                 799**************************************************8777777788888889999999999999****9988.5889999999988888887777655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   1.1e-05     0.009     110     208 ..      29     115 ..      17     144 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-05
   TIGR02521 110 cqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwL 208
                 +q+k++ +A + +++Ai +  ++  a+ ++N   c+l+ g++e a +  +r  k++p+ +++ + +a   l  ++          +++ + ++ e L+L
  MMETSP1174-20130828|4343_1  29 FQKKDFPSAAEAYTEAIYM--VPGDASFWSNRSACYLSMGQNELALSDAERCCKLRPDWSKAYYRVATARLALKR----------FEDAALAAFEGLKL 115
                 5778888888888888865..678889999999999999999999999999999999999999977755544444..........44444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|4344_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   34.0   0.0    1.7e-09   33.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0037   13.7   0.0     0.0053   13.2   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
     0.0043   14.4   0.5     0.0085   13.4   0.2    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.3e-12   1.7e-09      77     181 ..     246     347 ..     167     348 .] 0.84

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.3e-12
   TIGR03903  77 paaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh....akvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivle 181
                   ++t ++ + + Dal + h  G  hRD+k +ni+v +a ++s+     +++DFGi   l +             e+ G+P + aPe + R      k+D+++ G +vle
  MMETSP1174-20130828|4344_1 246 YDTNTMKVATAIRDALQHIHTLGYAHRDVKGENILVRTASENSTlitgVRLIDFGIVCRLDDEVS--------CRELCGTPGFIAPEVIwRQVEDARKADVWSLGCVVLE 347
                 457899999***************************998877653333689*****998876554........689***********97477777889***********9 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.9e-06    0.0053     242     309 ..     230     308 ..     201     327 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-06
   TIGR01982 242 ipvsdleklkeaG...ldlkala.enlvesflkqvlrdgfFHaDlHpGNilvakd.......gkiialDfGivgrlsee 309
                 +++ ++ ++ ++G   +d +++  ++ ++  l+++   g+ H D+   Nilv++          + ++DfGiv rl++e
  MMETSP1174-20130828|4344_1 230 TNLLQFSRIMNEGtrvYDTNTMKvATAIRDALQHIHTLGYAHRDVKGENILVRTAsenstliTGVRLIDFGIVCRLDDE 308
                 5555555555555333344433213457788999999***************988777777767889*********987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   6.2e-06    0.0085      87     135 ..     245     301 ..     218     310 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.2e-06
   TIGR03724  87 lleekelellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGL 135
                 + +++++++++++ +++ ++H  g +h D+  +Ni+v+         + + liDfG+
  MMETSP1174-20130828|4344_1 245 VYDTNTMKVATAIRDALQHIHTLGYAHRDVKGENILVRtasenstlITGVRLIDFGI 301
                 344556699****************************75554333323456788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 900.63
//
Query:       MMETSP1174-20130828|4347_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 823.93
//
Query:       MMETSP1174-20130828|4350_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 496.70
//
Query:       MMETSP1174-20130828|4351_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|4354_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 328.09
//
Query:       MMETSP1174-20130828|4356_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1142.53
//
Query:       MMETSP1174-20130828|4357_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 223.02
//
Query:       MMETSP1174-20130828|4358_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|4363_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.2   0.3     0.0047   13.5   0.1    1.7  2  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
  ------ inclusion threshold ------
       0.04   11.8   0.0        5.1    4.9   0.0    2.5  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.021        44     332     415 ..      13      94 ..       5     107 .. 0.63
   2 !   13.5   0.1   2.3e-06    0.0047     602     666 ..      77     146 ..      52     153 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.021
   TIGR02110 332 laelleeyerLeqrrlqlaaalelaqldaralgaalgealaaalkdllaalqdapserlatqtrlp.gapfarsgleapvarlar 415
                 la+  e +++ + r l +++   l +    ++++     l +++++ll +  + p   +a q++++   +   + + ap ++ ++
  MMETSP1174-20130828|4363_1  13 LAATNESLQKFHSRALSTLSCRSLLHG---NVEKHTALTLVDDVTELLSRSRVLPEATMAEQRVVDlPVGRFLARIAAPSDAEEN 94 
                 566666666666666664443333322...3444455567888888888888888888888888876555555557777766554 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.3e-06
   TIGR02110 602 rlgrgveela..vdgges.AlL.lFiPlP.tadvaseAAlRlLaqlletaFyqRLRvelQlGYavfsrvr 666
                 ++gr + ++a  +d+ e+ A+  +F+    + +  + A l lL+q+++ + +  LR   QlGY+v++   
  MMETSP1174-20130828|4363_1  77 PVGRFLARIAapSDAEENsAVVtVFMVGQlETNPRDTALLSLLTQVIKEPAFTTLRTREQLGYVVSASTM 146
                 4445444444113444432443155533212344678889**************************9765 PP

>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0049        10      31      61 ..     191     221 ..     189     229 .. 0.87
   2 ?    4.9   0.0    0.0025       5.1      13      38 ..     272     296 ..     261     306 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0049
   TIGR02603  31 LtgvkatkekevlleaildPseevakgfeaa 61 
                 Lt++  + ++e l +++l+P +++a++f+++
  MMETSP1174-20130828|4363_1 191 LTDLDLATHQESLRTKLLEPPKQIAAEFAQW 221
                 6777778899******************986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0025
   TIGR02603  13 aCvvCHrvggeGvdvGPdLtgvkatk 38 
                 +C + H +++ G d+GPd ++ k+t 
  MMETSP1174-20130828|4363_1 272 HC-ASHPLEEGGKDAGPDTSEAKQTG 296
                 34.56*************99888443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1116.83
//
Query:       MMETSP1174-20130828|4361_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2714.24
//
Query:       MMETSP1174-20130828|4364_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|4362_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1174-20130828|4367_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.0   0.0      0.024   10.5   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   6.3e-05      0.26     130     157 ..       9      37 ..       3      44 .. 0.75
   2 !   10.5   0.0   5.8e-06     0.024     126     150 ..      40      64 ..      31      72 .] 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 6.3e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlek.gasv 157
                  g t+l +A+ k n+ +v+ L     a+v
  MMETSP1174-20130828|4367_1   9 GGATPLYIAASKGNLDLVRYLAREaHADV 37 
                 58999999999999999999864314555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.8e-06
   TIGR00870 126 seftkgitalilAihkqnyeivklL 150
                  +   g t+l++A+ k n+++v+ L
  MMETSP1174-20130828|4367_1  40 ANTDGGCTPLHIAAFKGNLNVVRYL 64 
                 5556799***************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|4375_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|4376_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|4374_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.59    6.2  10.4       0.69    6.0   7.2    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.2   0.00017      0.69     265     438 ..     135     235 ..      76     288 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00017
   TIGR00934 265 mlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeee.......d 438
                 m                                                                                + e+ d++e +++++++  v   vk +++++  + ++ a++k   k +++++ d++e d+g   ++s++ ese+ + d+ee++++   d++        +
  MMETSP1174-20130828|4374_1 135 M-------------------------------------------------------------------------------TMGESDDEDEESEEEEEEAPVAVPVKRKRQNEGASSDQAAKSKKQAKVEAPESEDESEDDEG-DESKSDEEESEDDEDDDEEETTAKVDDQDGkdesdeeE 235
                 2...............................................................................34444555555555555666666666666666666666666666666666655555555555.55566666666666665553322222222122121110 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.21s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 736.36
//
Query:       MMETSP1174-20130828|4379_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1392.71
//
Query:       MMETSP1174-20130828|4381_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|4386_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 578.42
//
Query:       MMETSP1174-20130828|4385_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-12   45.4   0.0    2.6e-12   44.6   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      7e-05   20.8   0.6      7e-05   20.8   0.4    2.0  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
    0.00014   18.2   1.0    0.00022   17.6   0.1    1.7  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0061   12.5   0.1      0.012   11.5   0.0    1.4  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   2.6e-15   2.6e-12       5      67 ..     393     459 ..     391     472 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 2.6e-15
   TIGR02349   5 iLgvskdAseeeikkAYrklakkyHPDrnkg....ekeaeekfkeineAyevLsdeekraqYDqfgh 67 
                 +L+ +  As+ ++kkAYr+   ++HPD++      ++ a+ kf+ +neAye Lsd  kra+  +  +
  MMETSP1174-20130828|4385_1 393 TLDTKEAASAIDLKKAYRSACLRWHPDKHVSsaesRHRAHIKFQMVNEAYETLSDRTKRASHQRTCS 459
                 67888899*******************99764444677899*******************9998765 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.85   8.7e+02      83      83 ..     335     335 ..     287     387 .. 0.53
   2 !   20.8   0.4   6.8e-08     7e-05       8      55 ..     405     453 ..     393     455 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.85
   TIGR00714  83 l 83 
                 +
  MMETSP1174-20130828|4385_1 335 S 335
                 1 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.8e-08
   TIGR00714   8 LrkryrklQkqyHPD.vsksaqeqaaalqqStelNqAykTLkdplkRae 55 
                 L+k yr    ++HPD   +sa  +  a ++   +N+Ay+TL d  kRa 
  MMETSP1174-20130828|4385_1 405 LKKAYRSACLRWHPDkHVSSAESRHRAHIKFQMVNEAYETLSDRTKRAS 453
                 8999***********97788888999*********************95 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.19     2e+02     452     532 ..       5      86 ..       2     123 .. 0.65
   2 !   17.6   0.1   2.1e-07   0.00022      10      63 ..     396     454 ..     391     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.19
   TIGR03835 452 kveeetsvest.avedqvveaikeeeelleqkkaaefaelfgeptpttvieel.lepeqaqPtvldeiiieanldevsvaddq 532
                 ++ ee  +es  + e++vv a  e+ +    + a  +ae+ g +++   i+e  + +  ++P vl  + +  +   +s ++ q
  MMETSP1174-20130828|4385_1   5 RIIEELGIESSeKEEAEVVVAAHENGNGT-LEAAPALAEEKGGEEKSQCIDETnPRNLPVHPSVLPAKLMTRKDFCLSCTKGQ 86 
                 45566666654156677887766655543.44455577777777777777665146667777777665555555555555555 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.1e-07
   TIGR03835  10 idrDadeqeikkafrkLakkyhPDrnka.ad....aakifaeineandvLsnPkkrary 63 
                  +  a   ++kka+r    ++hPD+    a+    a   f+ +nea++ Ls+  kra +
  MMETSP1174-20130828|4385_1 396 TKEAASAIDLKKAYRSACLRWHPDKHVSsAEsrhrAHIKFQMVNEAYETLSDRTKRASH 454
                 556678889***************986544422224455*****************976 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.1e-05     0.012      18     159 ..      75     226 ..      71     236 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
   TIGR00870  18 ekaflkaiergdlalvkrkleeaklv.eklnin.....cvdrlgrsalls..aaieneneelteLllkke............egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvea 159
                  k f+ ++++g+ a +k  le++     k +++     + d +g+  l +   + +  n e+   ll +             e+e G  +L a+   ++++   +++++lk+++          + + +   k  t+l+ A++ +  +i +lL++kga v a
  MMETSP1174-20130828|4385_1  75 RKDFCLSCTKGQSAKMKALLEGNDDHaSKESQDalkslVDDTIGQA-LRDcaNMEKHPNVEVCRTLLAHGanpsllpeeeekEAEGGGECLTALHYSVQRGHGTLAAMMLKNPNV---------NINVQAGEKCRTPLHYAAQFNAPKIASLLIQKGAFVDA 226
                 5788999999999999998888776656666665555444444432.322003344445566666666668888888888999999*************************9933.........33444445567***********************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.48
# Mc/sec: 1300.64
//
Query:       MMETSP1174-20130828|4387_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1123.52
//
Query:       MMETSP1174-20130828|4389_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1174-20130828|4390_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 239.98
//
Query:       MMETSP1174-20130828|4392_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 562.02
//
Query:       MMETSP1174-20130828|4395_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 622.82
//
Query:       MMETSP1174-20130828|4397_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1174-20130828|4398_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-08   31.2   0.0      6e-08   30.3   0.0    1.5  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.44   1.8e+03      16      24 ..      18      26 ..      17      27 .. 0.74
   2 !   30.3   0.0   1.5e-11     6e-08       1      33 [.      37      69 ..      37      71 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.44
   TIGR00756 16 veeAlelfd 24
                +  Al+l++
  MMETSP1174-20130828|4398_1 18 WGSALRLLN 26
                678999987 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.5e-11
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivP 33
                +ty ++i+ +++a++++ Al+l+++M+ r++ P
  MMETSP1174-20130828|4398_1 37 HTYAAVIRVCGRAKQWKTALQLLKRMEQRKMAP 69
                69***************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|4401_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-38  128.3   0.4    1.3e-37  127.3   0.3    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.3e-28   96.2   0.0    1.2e-27   95.0   0.0    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.5e-27   93.4   0.1    5.2e-27   92.9   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.3e-25   86.5   0.3    1.5e-24   84.7   0.2    1.7  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.7e-24   84.5   1.6    2.4e-24   84.0   1.1    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.4e-23   80.6   3.4    6.4e-23   79.2   2.3    1.6  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.7e-16   56.9   0.7    3.1e-16   56.7   0.5    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      1e-13   49.2   0.4    2.9e-13   47.7   0.3    1.7  1  TIGR02415 23BDH: acetoin reductases
    1.4e-13   48.7   0.9    1.9e-13   48.2   0.6    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.4e-11   39.7   0.0    9.1e-11   39.5   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    9.3e-10   36.0   1.1    0.00032   17.8   0.1    2.1  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    3.9e-05   20.7   0.5      0.002   15.1   0.4    2.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0024   14.8   0.4      0.071    9.9   0.1    2.3  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
  ------ inclusion threshold ------
      0.011   13.0   0.1      0.016   12.6   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.3   4.3e-40   1.3e-37       2     193 ..      14     218 ..      13     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 127.3 bits;  conditional E-value: 4.3e-40
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea..........gge.vlalkadvtkee.eia.dlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqia 193
                 kv+ +tGa+sGig+a+a e+a+aGak++++  + ea++ +a+e+++a          + + +  l+ d+++   ei+ + +ea +   + +diLvnn Gi   ++ e    e  ++++++   +++ +++a+lp+m  +g G i+ i+sv+g  a +f+++Y aaKH+l G+  +   EvA+ g+++  +cPgyv t L  + ++
  MMETSP1174-20130828|4401_1  14 KVVWITGASSGIGRALAIEFAKAGAKLILSARKIEALNLVASECSTAvglsdktdksSLQvARVLPFDLAEPMlEIRkHGVEAEELWNAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLSMNAVT 218
                 89****************************9997777777766654311111110002231334567887754255414566666667889***********************************************************************************************************9887765 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   4.1e-30   1.2e-27       2     186 ..      17     213 ..      16     219 .. 0.79

  Alignments for each domain:
  == domain 1    score: 95.0 bits;  conditional E-value: 4.1e-30
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelke......agvkaaavk.....ldvsde.eevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmt 186
                  +tGas giG+a+a ++ak+gak++++ r+  e+++ +a+e +       +  k++  +     +d+++   e+++   e+ee ++  +dilvnn Gi+  + + + + e  ++v+++   +   +tkavl  m+ k +G i+ issv g l  +  + Yaa+K  l g+ +++  E+a r+++v +v+PG+++t++ 
  MMETSP1174-20130828|4401_1  17 WITGASSGIGRALAIEFAKAGAKLILSARKI-EALNLVASECSTavglsdKTDKSSLQVarvlpFDLAEPmLEIRKHGVEAEELWNaPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLS 213
                 69************************97755.44554444433211100033333333300001444443135555555666665548**********************99***********************************************************************************985 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   1.8e-29   5.2e-27       1     189 [.      14     214 ..      14     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 1.8e-29
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap.n..eerakewlqekevegf..dvavvkadvssfeeakaava..k..veae...lGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 +v ++tG++ GiG+a++ ++ak+G k++ + +  +  +  a+e+  + +++++  +  +  a v  f+ a+ +++  k  veae     pvd+lvnn Gi   +  ++ t e  + v+d++  +   +t+ v+ gml +g G i+ issv G      ++ y+aak  l+Gf  a+ +e+a +gv v +++PGy++t++ +
  MMETSP1174-20130828|4401_1  14 KVVWITGASSGIGRALAIEFAKAGAKLILSARKiEalNLVASECSTAVGLSDKtdKSSLQVARVLPFDLAEPMLEirKhgVEAEelwNAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLSM 214
                 7899**********************987666532112345555555554432112233333444444444443211222444412268************************************************************************************************************9876 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.2     5e-27   1.5e-24       2     190 ..      10     212 ..       9     234 .. 0.75

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 5e-27
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgis..e....lsetqekvealGrk.......flslkadladeeaakalvdeaveeag....kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvp...sytasksavaGltkllanewakkginvnaiaPGyletnn 190
                 sl+Gkv+ +tGa++G+G+++a+ +a+aGa+++  +++  +    +se   +v    ++       +  l  dla++    ++ ++ ve+ +     +dilvnn Gi  r+ a++ + +  + v++++  a   l++av   +l +G +g i+ i+s    qG + +p   sy+a+k+a+ G+  ++ +e a +g++v  + PGy++tn 
  MMETSP1174-20130828|4401_1  10 SLRGKVVWITGASSGIGRALAIEFAKAGAKLILSARKieAlnlvASECSTAVGLSDKTdksslqvARVLPFDLAEPML--EIRKHGVEAEElwnaPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKG-EGCIVVISS---VQGRLAIPfrtSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNL 212
                 79****************************987654311211113444444432222110111112234456655432..2222233332223348*************9999888888889************************.899999986...599999876669************************************95 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   1.1   8.1e-27   2.4e-24       1     208 [.      11     217 ..      11     261 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 8.1e-27
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadii.aidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepea 208
                 l Gkv +itGa+ G Gra a+ +a+ Ga +i +   +e l+ v + ++ t   l   +     +  +vl +      le  ++ ve        +d++v+n G+ s ++a   + e  + v+d++        kav+P ++ ++  G i+++ssv g  a+p+ + yaaakh l g+ +++  e+a+ g++v  + P  v+t++  +  
  MMETSP1174-20130828|4401_1  11 LRGKVVWITGASSGIGRALAIEFAKAGAKLIlSARKIEALNLVASECS-TAVGLSDKTDKSSLQVARVLPFDLAEPMLEIRKHGVEAEELWNAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKG-EGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLSMNAV 217
                 78**************************97725566777766665555.555555555555556667888888888899999999888778899***************999999999***********************999.679999***************************************************9876443 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   2.3   2.2e-25   6.4e-23       1     210 [.      11     234 ..      11     244 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 2.2e-25
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekgg......k.....aeavavditdras..vdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtal.ledvkseaekpeklieaftra 210
                 l++kv+ +tg + gig a+   fa+ gak+ +   + ea + va++   + g      k     a+ +  d+++      +  v a e    pvd+lvnn g     +  +t     +r++ i+    + + +avl+gm+ +++g iv i+s  +r      + yaa k  l  f  ++  e a +g+ v +vcpg   t l ++ v++ ++   kl ea ++ 
  MMETSP1174-20130828|4401_1  11 LRGKVVWITGASSGIGRALAIEFAKAGAKLILSARKIEALNLVASECSTAVGlsdktdKsslqvARVLPFDLAEPMLeiRKHGVEAEELWNAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLsMNAVTGSGDAHAKLDEATAKG 234
                 689***************************99999999999999887766552222112222224455678887654113456777788889**************99999999999************************************************************************************95667788888899**9998876 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.5   1.1e-18   3.1e-16     408     599 ..       7     208 ..       1     243 [. 0.85

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.1e-18
   TIGR02632 408 kekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava.........lkldvtdee.avkaa.faevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 +  +l ++v+ +tG++sGiGr++a+ +++ Ga ++l   + ea++ va e     G               l  d+++   ++++  +++  l    vdi+vnn Gi++ +  e+t+le  ++ +di       +++     +  +g  g +v i+s+ + +a +  ++y+aak a       + +e a+ g++v  v P  v
  MMETSP1174-20130828|4401_1   7 RSTSLRGKVVWITGASSGIGRALAIEFAKAGAKLILSARKIEALNLVASECSTAVGLSDKTDksslqvarvLPFDLAEPMlEIRKHgVEAEELWNAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGMLTKGE-GCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYV 208
                 667899********************************************99999865444446677777788999886425655415666677789**********************99999999988887777777777777775.56999**********************999********************9877 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.3   9.9e-16   2.9e-13       1     191 [.      14     216 ..      14     258 .. 0.74

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 9.9e-16
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln......eetaketakelkekgtk.....avavkldvsdks.eveeaveqavekl.GeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei 191
                 kv  +tGa+ GiG+a+a  +ak G ++++   +       ++   ta  l++k  k     a ++  d+++   e+ +   +a e +   +d+lvnn G++  ++ ++ t e  +++ +++ ++ +   +a    +  +k +G i+  +s+ g  + p  + y+++k+a++g+  +   e+a++g+ v   +PG v t++  + 
  MMETSP1174-20130828|4401_1  14 KVVWITGASSGIGRALAIEFAKAGAKLILSARKiealnlVASECSTAVGLSDKTDKsslqvARVLPFDLAEPMlEIRKHGVEAEELWnAPVDILVNNGGISSRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGM-LTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLSMNA 216
                 6889**********************99987663233122222334445566555511112445556666543144443333333332569**************999999999********99886666665555.5566799******************************************************986554 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.6   6.4e-16   1.9e-13       1     187 [.      16     213 ..      16     256 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 6.4e-16
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdra...daeesvaai.......raqggnarllkfdvadrv.avre.vleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynv.ihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemv 187
                 v +tgas gigra+a+++a +g ++ +  r+ +a    a e+ +a+       ++    ar+l fd+a+ + ++r+  +ea+   +     +v n gi+  +a    + e    v+  ++d f  v +   v+p + ++  g i+ ++sv g +    +  y+aak  l g   a+  e+a+r + v  + pg + t++ 
  MMETSP1174-20130828|4401_1  16 VWITGASSGIGRALAIEFAKAGAKLILSARKIEAlnlVASECSTAVglsdktdKSSLQVARVLPFDLAEPMlEIRKhGVEAEELWNAPVDILVNNGGISSRSAAEHTTLEVDKRVM--DIDYFAPVaLTKAVLPGMLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVSTNLS 213
                 679**********************9998875542222333333331111111223345899*****9864245541456666666666678899999876666555544444555..57888877356789999999999*******************************************************9974 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.1e-13   9.1e-11       3     223 ..      16     233 ..      14     254 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.1e-13
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie........aevsalsvdlv.sldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvreeasdpdvkalyrelked 223
                 + +tGas G+Gr+la e+ak     g +l+L+aR  eaL+    e          +++s+l+v +v + dl     +e     +e++  ++     +l+nn G +   s+ + e +  +  ++  d + ++ v+lt  +l  +      e  +v +ss+    +++  + Y a+k a   ff +   e     vkv    pG + t++   +   + d   +a + e  ++
  MMETSP1174-20130828|4401_1  16 VWITGASSGIGRALAIEFAK----AGAKLILSARKIEALNLVASECStavglsdkTDKSSLQVARVlPFDLAEPM-LEIRKHGVEAEELWNAPVD-ILVNN-GGIS--SRSAAEHTTLEVDKRVMDIDYFAPVALTKAVLPGML--TKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVAdRGVKVTIVCPGYVSTNLSMNAVTGSGD--AHAKLDEATAK 233
                 679*****************....89*************988777664344533333344445443256664433.6766677777777766544.44555.5555..55555556677777899*************998877..45577888899999999**************************9788***************9998877777..45555555544 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.1e-06   0.00032       3      50 ..      11      58 ..       9      78 .. 0.81
   2 !   17.3   0.0   1.6e-06   0.00047     110     193 ..     129     214 ..      87     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
   TIGR03325  3 lkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahg 50
                l+++vv +tg +sg+gral   f   ga++ +  +  + l+ + ++ +
  MMETSP1174-20130828|4401_1 11 LRGKVVWITGASSGIGRALAIEFAKAGAKLILSARKIEALNLVASECS 58
                899**************************9988888877776655444 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.6e-06
   TIGR03325 110 evfeinvkgyllavkaalpa.lvasrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrg 193
                  v++i+  + +   ka+lp  l +  g+++   s  g  +    + y+aakha+ g+   +  e+a + v+v  v pg +st+l  
  MMETSP1174-20130828|4401_1 129 RVMDIDYFAPVALTKAVLPGmLTKGEGCIVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRgVKVTIVCPGYVSTNLSM 214
                 56677777778889****96156677888777788999***************************9866*************9965 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.4     7e-06     0.002     155     208 ..     157     210 ..      13     251 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7e-06
   TIGR02685 155 ivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsll 208
                 iv +      + ++  + y+ ak+al+G+ ++   e+a ++++v  v+pG    
  MMETSP1174-20130828|4401_1 157 IVVISSVQGRLAIPFRTSYAAAKHALHGFFEAFRAEVADRGVKVTIVCPGYVST 210
                 444444445555566689********************************6544 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00024     0.071     139     178 ..      12      51 ..       5      69 .. 0.80
   2 ?    2.8   0.0     0.036        10     193     232 ..     182     219 ..     150     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00024
   TIGR02824 139 agetvLihggasGiGtt.aiqlakalgakvlvtagsdekle 178
                 +g+ v i g++sGiG + ai +aka gak++ +a++ e l+
  MMETSP1174-20130828|4401_1  12 RGKVVWITGASSGIGRAlAIEFAKA-GAKLILSARKIEALN 51 
                 6999***********6449***997.888888887776655 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.036
   TIGR02824 193 eedFvevvkeetegkGvdvilDivggsyleknlkalakdG 232
                  + F e+ ++e +++Gv v   iv   y++ nl++ a  G
  MMETSP1174-20130828|4401_1 182 LHGFFEAFRAEVADRGVKVT--IVCPGYVSTNLSMNAVTG 219
                 56799***********9986..69999*****99999887 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.4e-05     0.016       5      48 ..      15      57 ..      11     124 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.4e-05
   TIGR01289  5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl 48
                 v itgassg+g a a  +++ g  +++++ r++e  + +a + 
  MMETSP1174-20130828|4401_1 15 VVWITGASSGIGRALAIEFAKAG-AKLILSARKIEALNLVASEC 57
                678********************.899******99887777653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 718.02
//
Query:       MMETSP1174-20130828|4405_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1174-20130828|4408_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|4409_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 179.37
//
Query:       MMETSP1174-20130828|4412_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 614.79
//
Query:       MMETSP1174-20130828|4414_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|4416_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1149.69
//
Query:       MMETSP1174-20130828|4431_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 156.43
//
Query:       MMETSP1174-20130828|4430_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|4433_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   44.1   3.0    3.8e-12   43.5   2.1    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    5.6e-06   22.3   4.2    1.3e-05   21.1   2.9    1.6  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.3e-05   21.0   3.5    0.00024   18.6   0.8    2.6  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0026   15.3   3.2       0.47    8.0   0.5    2.7  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   2.1   3.7e-15   3.8e-12     122     243 ..     143     267 ..     103     286 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 3.7e-15
   TIGR00990 122 erkkyaaklkekGnkayrnkdfdkaielyskalllked.P...vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfa 243
                   ++ a k+k +Gn+  + k++d a+elyska+ + +d P   +y++nra     l +    v+d  aa+e +p y ka  r   a++ l  ++ a+ +    ++  +  +++saq +    +k+a
  MMETSP1174-20130828|4433_1 143 TNEEKAEKFKVEGNETLKAKNYDAAVELYSKAIDVCPDgPkshIYFANRAMARHYLKQHLGAVDDCNAAIERNPAYAKAYTRLGLAQQALNDWSSAVEN-HKKAVELEPSNKSSAQYLKTAQQKYA 267
                 4567799**************************99998535569**************************************************99865.45667777788888888888877777 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   2.9   1.3e-08   1.3e-05     120     228 ..     143     254 ..     114     265 .. 0.61

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.3e-08
   TIGR02917 120 ddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenklde...aralvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaia 228
                  +ee+ae   + g+  L+ ++ ++A + +++A    p+ +++ +  A  a+a++ l++   a    +++++ +p+ ++A+  +g  ++++++   A++  +ka+el+p +++
  MMETSP1174-20130828|4433_1 143 TNEEKAEKFKVEGNETLKAKNYDAAVELYSKAIDVCPDGPKSHIYFANRAMARHYLKQhlgAVDDCNAAIERNPAYAKAYTRLGLAQQALNDWSSAVENHKKAVELEPSNKS 254
                 4566666666666666666666666666666666666666666666666666664443111334444566666666666666666666666666666666666666666654 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.02        21      25     177 ..     143     190 ..     128     200 .. 0.52
   2 !   18.6   0.8   2.3e-07   0.00024      37     100 ..     193     254 ..     187     257 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.02
   TIGR02521  25 kdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelae 177
                 +++eka k++v+ + e l+++++++A e   kA+ + p                                                                                                        + p+s    a+
  MMETSP1174-20130828|4433_1 143 TNEEKAEKFKVE-GNETLKAKNYDAAVELYSKAIDVCP--------------------------------------------------------------------------------------------------------DGPKSHIYFAN 190
                 444444455554.4445555555555555555555554........................................................................................................44444444443 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.3e-07
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 +a +Yl+q+    A ++ + A+e +p++a+a+  l+l+ q l + + A e+ +kA++l+p n +
  MMETSP1174-20130828|4433_1 193 MARHYLKQH--LGAVDDCNAAIERNPAYAKAYTRLGLAQQALNDWSSAVENHKKAVELEPSNKS 254
                 567788876..46999********************************************9875 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5   0.00045      0.47      64     122 ..     160     218 ..     155     221 .. 0.82
   2 !    7.7   0.1   0.00059       0.6      48      93 ..     215     262 ..     212     275 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00045
   TIGR02552  64 alkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                 ++k+y+ A++ Y+ a  + +d p+ + + a+  +a +  ++ l a + + +  e +++y
  MMETSP1174-20130828|4433_1 160 KAKNYDAAVELYSKAIDVCPDGPKSHIYFANRAMARHYLKQHLGAVDDCNAAIERNPAY 218
                 789*************************9998888877777777777776666666666 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00059
   TIGR02552  48 dpteakywlgLaaclqalkeyeeAiaaYalaaaldlddpr..pvyhaa 93 
                 +p+ ak   +L+++ qal++++ A+++ + a+ l++++ +   ++++a
  MMETSP1174-20130828|4433_1 215 NPAYAKAYTRLGLAQQALNDWSSAVENHKKAVELEPSNKSsaQYLKTA 262
                 6777888899************************98765410445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 1009.33
//
Query:       MMETSP1174-20130828|4435_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|4434_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1284.22
//
Query:       MMETSP1174-20130828|4437_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1088.02
//
Query:       MMETSP1174-20130828|4445_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|4447_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|4449_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.96
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|4450_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 676.44
//
Query:       MMETSP1174-20130828|4453_1  [L=880]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-129  430.4   0.0   2.3e-129  430.1   0.0    1.0  1  TIGR00456 argS: arginine--tRNA ligase
     0.0055   13.6   0.0     0.0085   13.0   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
      0.079    9.5   0.1       0.13    8.8   0.0    1.2  1  TIGR00398 metG: methionine--tRNA ligase
       0.11    8.4   0.0       0.15    7.9   0.0    1.1  1  TIGR00396 leuS_bact: leucine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00456  argS: arginine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.1   0.0  2.3e-132  2.3e-129       6     566 ..     299     877 ..     294     880 .] 0.88

  Alignments for each domain:
  == domain 1    score: 430.1 bits;  conditional E-value: 2.3e-132
   TIGR00456   6 keeikealekagas...kesei.lveetpnkefgdyasniafelakelkk.......apkeiaeeiveklktk.eiiekveaagp.finfflspqklleklikkileqkekyGskklk.kkkiviefsSaNpakplHvGHlRsaiiGdslarileflGydvlreyyvnDmGrqigllvlslekagnekkneavkkedhalegvyveinkkleedeeleeearellvkleegdekliklwkrlvelaleeiketlkrlnvkfdefkvesesvkngklkkvledLkekglveed.galvldltefgdkekdvvlqksdgtslYltrDiayhlekler.gfdkliyvlgsdhklhikqlfaileklg.lek.kkelehlefglvklks...lktRkGkvisldelldeaskragkvitkkk.dleedeke.....kvaeavglgAvryallskkrekdiefdwdealsfegntvpYiqYahaRirsilrkae......idgekeiaadlllleekekeLvklllqfpevieeaaeerephvltnYlyelaklfssfYkackvldaeneelakaRLkllkatrkvLknaLelLgieav 566
                 ++ ++ a+ ka+ s   +  +i  v   ++ +fgdy++n +++l k+lk+       +pk +a  iv+++ ++ ++i+k ++    fin+ l p  +le  i  +l+++      +++ k+k+v++fsS+N+ak++HvGHlRs+iiGd+++r+lef+G++v+r ++v+D+G+q+g+l+l +e+a+ +     +  ++ +l ++y  ++k++++d +++ +ar+++v+l++gd++++++w+ l++++ +e+ + ++rl+v+ +e    +es++n  +++v+++L+  +l+e + ga v++l+   +    + lqksdg++ Y  +D+ +++++ ++ g+d l+yv+++ ++ h+ + f +++ +g + + k +++h+ fg+v+ +    +ktR G++++l  lldea  r++  + ++  +  + + +     k a ++g gAv+y++ls+++ +d++f++d++ls +g+t+ Y+ +ahaR+ si rka        +++ e  a l+ +e++e +L+  llqf ++++ + +++ ph+++++ly+l+ +f +f  +c vl++++    ++R+ l++at +v++++++lLgi++ 
  MMETSP1174-20130828|4453_1 299 NKIFERAIRKAFPSllqQGVKIgSVMR-SKGKFGDYQCNEPMRLYKILKEasadhppNPKTVATMIVDQVPANsKMISKCDIHPSgFINIHLAP-SFLEASIGFVLKNG--VQPPPVErKRKVVVDFSSPNIAKEMHVGHLRSTIIGDTICRTLEFIGHEVVRLNHVGDWGTQFGMLILHMEEAYPDF--LTNPPNISDLTTFYKGAKKRFDDDDDFKTKARDTVVRLQSGDAHCREVWQLLCDISRKEFDKVYARLDVTVEER---GESFYNSRIPAVVTELQRLKLIEDNdGAKVIFLKPRWE--NPLFLQKSDGGYGYDSTDMTAIKYRIDElGADWLVYVTDAGQQDHFYMCFEAARRAGwIDDsKHTVQHIGFGVVQDEFgkrFKTRSGETVKLGALLDEAGVRMRTCLDQRVtE-GKCHLDpqdlaKAAAQIGYGAVKYFDLSNHPGTDYKFNFDKMLSVQGDTAVYLAFAHARLASIIRKAGdlhkvsVTQLVESGAALEFKEPQELALALELLQFTDMLTLVSKDLLPHRICEFLYKLSIVFTQFVTNCYVLGTAEM---NSRILLCEATGRVMRQCFQLLGIQPH 877
                 555555555555552213334433333.3889***************9974444444699************99*********999********.9**********555..5555566799******************************************************************6..689999*******************************************************************9...9****************999999999******985442..47*******************************************************86651568**********876668***********************999998532.22111123355999***************************************************76412221133344444555556*****************************************************865...9**********************986 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.3e-06    0.0085      22      64 ..     417     459 ..     404     465 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.3e-06
   TIGR00435  22 vkiYvCGpTvYdasHlGhaRtlvvfDvlrrilqylgYdvqyvq 64 
                 v +    p +  ++H+Gh R++++ D++ r+l+++g +v   +
  MMETSP1174-20130828|4453_1 417 VVVDFSSPNIAKEMHVGHLRSTIIGDTICRTLEFIGHEVVRLN 459
                 55555667777899************************97655 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00013      0.13      13      42 ..     429     458 ..     424     470 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00013
   TIGR00398  13 kpHlGhllttilaDvlarykrlrGeevlfv 42 
                  +H+Ghl++ti++D++ r  ++ G+ev+ +
  MMETSP1174-20130828|4453_1 429 EMHVGHLRSTIIGDTICRTLEFIGHEVVRL 458
                 68************************9866 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00015      0.15      41      70 ..     427     456 ..     407     470 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00015
   TIGR00396  41 sgalHlGHvrnYtitDvlsRykrlkgynvl 70 
                 + ++H+GH+r+ +i+D + R     g++v+
  MMETSP1174-20130828|4453_1 427 AKEMHVGHLRSTIIGDTICRTLEFIGHEVV 456
                 345******************999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.19s 00:00:00.83 Elapsed: 00:00:00.56
# Mc/sec: 2074.11
//
Query:       MMETSP1174-20130828|4457_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   14.5   0.1     0.0074   14.1   0.0    1.2  1  TIGR03803 Gloeo_Verruco: gloeo_Verruco repeat


Domain annotation for each model (and alignments):
>> TIGR03803  Gloeo_Verruco: gloeo_Verruco repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-06    0.0074       6      33 ..      14      41 ..      11      42 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-06
   TIGR03803  6 GTTsgGGasgfGTiyrlspaGgftvLhs 33
                +TTs GG +  GT  ++++a++ +v+h+
  MMETSP1174-20130828|4457_1 14 FTTSTGGHNKAGTCSKVDAATVNQVVHD 41
                9*********************999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|4461_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1174-20130828|4462_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1424.57
//
Query:       MMETSP1174-20130828|4463_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1400.37
//
Query:       MMETSP1174-20130828|4465_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|4469_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1174-20130828|4471_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.9  18.1        2.9    4.8  12.5    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.5   0.00071       2.9     115     166 ..       7      55 ..       1      56 [] 0.29

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00071
   TIGR02794 115 eeaakekeekkkqaeeakakqaaEa.kakaeaeaKaekkakeeAakkaEeeak 166
                 e++a e  ++k+++ e k++  +Ea   +ae    +++ a+e A+k+aE eak
  MMETSP1174-20130828|4471_1   7 EQEATE-LARKRAEFETKRQ--KEAaDLAAEIVT-QQRDAAENARKRAELEAK 55 
                 222221.1112222222222..222122222211.122233335555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1174-20130828|4474_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|4475_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1174-20130828|4477_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-34  117.1  16.8    2.3e-34  116.8  11.6    1.1  1  TIGR00797 matE: MATE efflux family protein
  ------ inclusion threshold ------
      0.048   10.2   6.7      0.024   11.2   1.8    2.2  2  TIGR01695 mviN: integral membrane protein MviN


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8  11.6   1.1e-37   2.3e-34     124     396 .]      11     291 ..       2     291 .. 0.94

  Alignments for each domain:
  == domain 1    score: 116.8 bits;  conditional E-value: 1.1e-37
   TIGR00797 124 avllslalqgvlrGagdtktpliitvignviniiLdyilifkfg......lGivGaAlAtvisqylmflllllyilkakkvdlknegllkpdwealkr...llklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkglw 396
                   +l ++++++l +++  +++ +i+v+ +v+n++L+++l+f +g      lG++G+ +At +++ l +l+ l+++++ +    +++g+   +  +++r   +l    p++   +++ + ++l++  + ++ +++lAah+ +l + ++l+  + Gl+   s++++ +lGag+ + a +va v+  l  +lgl+++++ i+ r ++  +f++d ev ++a +l  +v+ ++  + l +   +vlrG g+ ++ a++++v aw+i++pl+++l++  ++g  glw
  MMETSP1174-20130828|4477_1  11 PDALLTVIFQWLIAQEVIRPVGLINVVFLVVNVVLNVVLVFGYGcygwdgLGFKGSPIATSLTTALKLLVTLIWVRR-RGGWETWAGFDLRASLQCRRasvFLSQAAPSAATSLIENLQFMLITTWAGQFDAESLAAHSAMLDIFTVLTAGLYGLGDSCSVRIATELGAGNHRTAIDVAFVTGGLMCFLGLLIGAVFIISRDYVGMIFSTDHEVWRIATKLSTLVGCFYGCLCLLYGSFSVLRGQGRPGIGAVAMLVGAWGIAVPLGYVLAFNNDQGVFGLW 291
                 5578899*********************************************************************6.666666666655555555554449***********************************************************************************************************************************************************************************9 PP

>> TIGR01695  mviN: integral membrane protein MviN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.8   1.2e-05     0.024     134     255 ..       9     140 ..       2     162 .. 0.47
   2 ?    0.2   0.1     0.025        51     217     254 ..     188     230 ..     172     317 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.2e-05
   TIGR01695 134 lllisLaavfgaiLnarerFfipsfspvlf...NisvIvsllllvkslgqaalala...igvliGgvvQlliqlpalrkag....alllkprfnfrdkglkrvlklllptvlgvsvsqisslintalASfle 255
                 ll   L +v+++ L a+e  +  +++ v+f   N+++ v+l++ +  +g+  l +    i++ +   + ll+ l+ +r+ g         +r + + +    +l +++p + ++ ++ +++++ t+ A +++
  MMETSP1174-20130828|4477_1   9 LLPDALLTVIFQWLIAQEVIRPVGLINVVFlvvNVVLNVVLVFGYGCYGWDGLGFKgspIATSLTTALKLLVTLIWVRRRGgwetWAGFDLRASLQCRRASVFLSQAAPSAATSLIENLQFMLITTWAGQFD 140
                 333334444444444444444444444433222444444444444444444444323335555555555555555555555443323334444444444455555555555555555555555555555555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.025
   TIGR01695 217 nfrdkglkrvlklllptvlgvsvsqisslint.....alASfl 254
                 +f + gl+ +l ll+ +v+ +s  +++ +++t     ++A+ l
  MMETSP1174-20130828|4477_1 188 AFVTGGLMCFLGLLIGAVFIISRDYVGMIFSTdhevwRIATKL 230
                 4444555555555555555555555555544444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1483.88
//
Query:       MMETSP1174-20130828|4478_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|4479_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   12.6   0.1     0.0056   12.4   0.1    1.1  1  TIGR02600 TIGR02600: Verrucomicrobium spinosum paralogous protein TIGR02600


Domain annotation for each model (and alignments):
>> TIGR02600  TIGR02600: Verrucomicrobium spinosum paralogous protein TIGR02600
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.4e-06    0.0056     700     844 ..      82     224 ..      50     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-06
   TIGR02600 700 snvpfvsaditvkrtattftfeggnitieilagegkaailkaltliqtaklttpvpdlatvpsvalrapralaaeyantvekteklkrseevknsarkeliqpgdvvrsvvvdaa..glargdlriiaalsdvpadlysthperdpa 844
                 ++++++ +++    ++ +++fe+ +i  + l   + a   +++t+ +  ++ +  +d ++ + v l+  + +a +++n+  k e+ ++s++++ s+ ++ + ++ +  +++++ +   + +   ++i ++ + p+   +++++++  
  MMETSP1174-20130828|4479_1  82 KSYEAIFNEFRH--ENGEINFEDFEIGLKKLIKGQTADPDDTATKEF--RVMFDYLDDNQSNGVDLKEFQEYALKMKNVSWKAERIRQSNDFPGSLLNKAVVNPATFSNDEIKTKtcVVDKHHTDTITEVYHGPKFFWRSQTKLELV 224
                 444444444433..578999999999999998866666555555555..677778************************************************************87777888899999999999888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 1938.87
//
Query:       MMETSP1174-20130828|4483_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1174-20130828|4482_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-08   30.0   0.0    5.8e-05   20.6   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.5e-05   21.4   0.0    2.5e-05   21.4   0.0    2.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0017   15.2   3.1     0.0049   13.7   0.0    2.6  3  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0003      0.41     272     348 ..      35     106 ..      12     109 .. 0.79
   2 !   20.6   0.0   4.2e-08   5.8e-05       4      63 ..     107     165 ..     104     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0003
   TIGR01661 272 ifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                 +fv       + +v +l  pfG+v++  i +         ++fv+m    e+     sl+   +g+ +l+v   +++
  MMETSP1174-20130828|4482_1  35 LFVSGAGVTDEASVRRLVEPFGTVVD--IYKKA---GPGSWAFVTMKTRAESQAVRSSLDNKAMGHGILRVRWASSQ 106
                 56655555555566799*****9965..44544...4567*************9999*************9988776 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 4.2e-08
   TIGR01661   4 tnlivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavn 63 
                 + + v  lP   t+e +r  f+s+Ge++ + +  d   G sl yG v+++r+   e a++
  MMETSP1174-20130828|4482_1 107 SSIWVGRLPSICTNEMLRLAFSSFGEVDHAIVYTD-NSGNSLRYGSVEFIRKTSVESAIA 165
                 5667889*********************9866666.57*****************99996 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.8e-08   2.5e-05      86     148 ..     104     166 ..      71     170 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.8e-08
   TIGR01628  86 sGvgNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAiek 148
                 s ++ i v +L+   +n+ L   Fs+fG++    v td++G+S  Yg v+f +++s ++Ai +
  MMETSP1174-20130828|4482_1 104 SSQSSIWVGRLPSICTNEMLRLAFSSFGEVDHAIVYTDNSGNSLRYGSVEFIRKTSVESAIAE 166
                 566789999999999999999999999999999999999999999999999999999999976 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.081   1.1e+02     218     249 ..      31      61 ..      16      89 .. 0.73
   2 !   13.7   0.0   3.6e-06    0.0049     218     277 ..     105     163 ..      76     167 .. 0.82
   3 ?   -3.4   2.9      0.55   7.5e+02      55     102 ..     239     286 ..     192     299 .. 0.63

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.081
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielv 249
                 a  kL+v +      E ++r + epFG + ++
  MMETSP1174-20130828|4482_1  31 ARAKLFVSGAGV-TDEASVRRLVEPFGTVVDI 61 
                 556677766432.358899*********9887 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3.6e-06
   TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeA 277
                 ++  ++vG l +  t+++Lr  F +FGe+++  +  D+ +G s  yG ++F        A
  MMETSP1174-20130828|4482_1 105 SQSSIWVGRLPSICTNEMLRLAFSSFGEVDHAIVYTDN-SGNSLRYGSVEFIRKTSVESA 163
                 567789************************98877775.56**********876655555 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.55
   TIGR01622  55 drdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerr 102
                 +++k r++    r++ +++++r +  +++re+  + k ++re++ + +
  MMETSP1174-20130828|4482_1 239 EKQKLREKVEAMRTQVREKQNRAIIMDQQREEIIKAKLRQREEQFQHE 286
                 333333333333333334444444444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1656.15
//
Query:       MMETSP1174-20130828|4484_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|4490_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|4493_1  [L=822]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-24   81.8   0.0    7.5e-24   81.3   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.8e-14   49.7   0.0    2.4e-09   33.8   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.4e-11   40.6   0.0    2.4e-09   34.0   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      3e-10   37.2   0.0    8.2e-10   35.8   0.0    1.6  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.2e-10   35.9   0.0    6.8e-09   32.8   0.0    2.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.4e-07   27.4   0.0     0.0041   14.0   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    3.9e-06   23.3   0.4    8.5e-06   22.2   0.2    1.5  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.5e-05   22.1   0.0    0.00053   17.0   0.0    2.1  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    0.00017   17.9   0.0     0.0011   15.1   0.0    1.8  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00052   16.2   0.0     0.0048   13.0   0.0    2.0  2  TIGR00631 uvrb: excinuclease ABC subunit B
  ------ inclusion threshold ------
       0.02   11.3   0.1      0.053    9.9   0.0    1.6  2  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0     2e-26   7.5e-24      13     344 ..     262     582 ..     252     598 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 2e-26
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpsliela..akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLle.aneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 +p+a Q ++l a+ +g++ + ia TG+GKTla + p+l++l+  ++ ++ +g   l ++P + La++i +  ++ ++ +g ++      G + + e a   k+ +++++ Tp  l+ ll +  +++ ++++++vv+DE   +++     +++   + + +++p+ +++  sAT++  ++ +a+++l++  + ++  +  +++  +++  +l  + ek  w        l++ l    k+  +lvF+  +s +E l  +L + +++e+a  i   Hg ld+  R     a+++g+ +++v+T     G+D + + +v++   +k++   + RiGR++
  MMETSP1174-20130828|4493_1 262 SPTAIQAATLPATLSGRDIIGIAQTGSGKTLAFVWPMLVHLMdqRELEKGDGPIGLILAPTRELAEQIYHEAHRFMKPFGAKV--VAVFGGAGKWEMASALKRGAEVVVATPGRLMELLRK--NATNLRRCTMVVLDEADRMFEMGFEYQMR---SIIDQIRPDRQTLLFSATLKRrIQGLANAILRDPIRVTVGKLGQSSEDVTQDVVVLVGNREKWSW--------LKNQLPGFLKTGKVLVFVSSKSGCEELALNLRKfMEPEVASLIDFIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQHVHRIGRTG 582
                 47889*************************************5333344489999**********************999765..55678899999******************9999865..56789**************9975555554...889999*************8626778888888877555555555455555555566665777666........34445555567899**********9999999873679*********************************************************************87 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   6.3e-12   2.4e-09      21     168 ..     247     398 ..     237     463 .. 0.83
   2 !   13.4   0.0   9.5e-06    0.0035     273     377 ..     487     588 ..     482     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 6.3e-12
   TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp......ratalylaPtkalaadqlravkelee..rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                 ++p++++ ++aaG e+p + qa++  ++ +G++++  + t sGk+la+  P+l  l++++      +   l laPt+ la+      + +++      +a++ G  + e  + ++  a++v++ P  l   +l+   + a+ lr+   vv+de+ +
  MMETSP1174-20130828|4493_1 247 FPPKLITCIAAAGFESPTAIQAATLPATLSGRDIIGIAQTGSGKTLAFVWPMLVHLMDQRelekgdGPIGLILAPTRELAEQIYHEAHRFMKpfGAKVVAVFGGAGKWEMASALKRGAEVVVATPGRLME-LLR---KNATNLRRCTMVVLDEADR 398
                 568899999*************************************************955555558999**********999998888877664556799************************99854.565...45789***********975 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.5e-06
   TIGR03817 273 rtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrr.eleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                 + l+fv s++g e +al+ ++ ++    e+a+ +  +  G l +  r    +a+++G+ + ++at+    G+disG+ +vv       +     ++Gr+Gr g d 
  MMETSP1174-20130828|4493_1 487 KVLVFVSSKSGCEELALNLRKFMEP---EVASLI-DFIHGDLDQGSRyTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQHVHRIGRTGRMGVDG 588
                 679***************9998876...444444.455677776655156689************************************************99875 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0062       2.3      10      51 ..     259     300 ..     255     305 .. 0.88
   2 !   34.0   0.0   6.4e-12   2.4e-09     110     362 ..     370     632 ..     353     643 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0062
   TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLl 51 
                 G+e+    q++ + + l+grd++++  tG Gk l +  P L+
  MMETSP1174-20130828|4493_1 259 GFESPTAIQAATLPATLSGRDIIGIAQTGSGKTLAFVWPMLV 300
                 6666677899999999*******************9999886 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 6.4e-12
   TIGR01389 110 aPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevr...edi.vekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLes...kgieala..YhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGR...DG.lkaeaillyseaDlallkrlieeseasedrkqieskkLdella 362
                 +P rl++   +++ +  + +++ +Dea  + + G     eY++   + ++ p++  + + at + +++   + i ++ ++++  +   ss d  + +  +v +++k + l + l    +    +++ ss++  eela +L++    ++++l+   h+ l++  R  ++ +F +  ++v+vat     G+d s +  v+ +d+ kn+e++    GR GR   DG  +  a +l  ++D  l+ +l+ + e+s+++  +e  kL + ++
  MMETSP1174-20130828|4493_1 370 TPGRLMELLRKNATNLRRCTMVVLDEADRMFEMGF----EYQMRSIIDQIRPDRQTLLFSATLKRRIQglaNAIlRDPIRVTVGKLGQSSEDVTQDVVVLVGNREKWSWLKNQLPGFLKtGKVLVFVSSKSGCEELALNLRKfmePEVASLIdfIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQHVHRIGRTGRmgvDGvTPGRAYTLCVHSDNDLACNLVINLEMSKQVVPKELVKLAKTSQ 632
                 56666666666666666666677777766666664....55555556666666666666777666665221122123344444444455555444444445555555555555443333134579999999999999877642214555553336********************************************************99999993334544678888888888888888888899999999999999988665 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.2e-12   8.2e-10     265     534 ..     286     566 ..     278     590 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.2e-12
   TIGR00643 265 VGsGKTvVavlallavi......es..GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGTha....ll.qekvefkeLalviiDEQhr.FGveQRkkLrekgkekiaph..vLvmsATPIPR..tlAltvygdldvsiidelPlGrkpittklikekekdkvyevveeeik...kgrqvyvvyplieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  GsGKT+  v  +l  +      e+  G   +++aPT  LAeQ y++++++++p+g +v  + g    + k e+  +++ G+ e+vv T      ll ++++++++ ++v+ DE  r F     +++r+  + +i+p+  +L++sAT   R   lA ++  d    ++ +l +  + +t  ++    + + ++++++++    k  +v v +   +  e+l l      l++  +      ++++hg l +  +   l++Fr+++ ++LvaT v   G+d+   t +v  d
  MMETSP1174-20130828|4493_1 286 TGSGKTLAFVWPMLVHLmdqrelEKgdGPIGLILAPTRELAEQIYHEAHRFMKPFGAKVVAVFGG---AGKWEMASALKRGA-EVVVATPGrlmeLLrKNATNLRRCTMVVLDEADRmFEMGFEYQMRSIID-QIRPDrqTLLFSATLKRRiqGLANAILRDPIRVTVGKLGQSSEDVTQDVVVLVGNREKWSWLKNQLPgflKTGKVLVFVSSKSGCEELAL-----NLRKFMEPEVASLIDFIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFD 566
                 69999999888887544122222332256689**************************9988886...57788999999997.7888886522222325678999*********998777888888888886.44564338******98884458889999977778999********999888877778899999998611144455554444444444442.....233333344445689**************************************9999888655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.8e-11   6.8e-09       9     323 ..     260     587 ..     255     642 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.8e-11
   TIGR00614   9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvs........dg...ltlvisPLisLmeDqvlqLk..asdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLk....lkkpqvtitsfdR.pnlkyev..eekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqk...kglaaaa..YhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglk 323
                 +es    q  ++ a+l+grd + +  tG Gk L +  p +v         +g   ++l+++P + L e   ++ +  ++   a +++       + e+ + lk g   ++  tP ++++   l ++  + ++ t++++Dea  + + G     +y++  ++ q  P+   +  +at + +++  +  +L+    ++  +   +s d  +++   v  +ek s + ++l  f++    gk  +++  s+  +e++a +L+k    ++a++    h +l++ +r +    f +   qv+vat     G++ + +  v+ ++++k+ie++   +GR GR g+ 
  MMETSP1174-20130828|4493_1 260 FESPTAIQAATLPATLSGRDIIGIAQTGSGKTLAFVWPMLVHlmdqreleKGdgpIGLILAPTRELAEQIYHEAHrfMKPFGAKVVAVFGGAG-KWEMASALKRGA-EVVVATPGRLMEL--LRKNATNLRRCTMVVLDEADRMFEMGF----EYQMRSIIDQIRPDRQTLLFSATLKRRIQGLANAILRdpirVTVGKLGQSSEDVtQDVVVLVgnREKWSWLKNQLPGFLK---TGKV-LVFVSSKSGCEELALNLRKfmePEVASLIdfIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQHVHRIGRTGRMGVD 587
                 566677899999**************************997433333333114459*********9886555544112333444444333333.345677778875.78889****9976..5566668999**************997....688888999999****************9766666542111222222223333212333333224555567777777877...7777.9****************983334676653337***************************9999*******************************97754 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.1e-05    0.0041      24      94 ..     276     357 ..     266     432 .. 0.73
   2 !   11.3   0.0   7.3e-05     0.027     324     426 ..     525     628 ..     464     638 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR04095  24 ngrGilkma.tGtGktltaLa.lvskl.....aekikslvvvvvvPykhLveqWakeaek....FglepilayesvsrWqke 94 
                 +gr i+ +a tG+Gktl  +  + ++l      ek +  + ++++P ++L+eq ++ea++    Fg + ++ ++++ +W+  
  MMETSP1174-20130828|4493_1 276 SGRDIIGIAqTGSGKTLAFVWpMLVHLmdqreLEKGDGPIGLILAPTRELAEQIYHEAHRfmkpFGAKVVAVFGGAGKWEMA 357
                 57888888769*****9865322233345456778888899***************9865222279*************753 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.3e-05
   TIGR04095 324 skeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk.spGkeraeiyDfivvPpkeadeledkefeversllkrelkRvv 426
                 ++ +R + l+ f +g+ q+lva      G+D+  i t +    ++n  q + R GR  R    G +  + y + v  +++       ++e+ ++++ +el ++ 
  MMETSP1174-20130828|4493_1 525 DQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQHVHRIGRTGRMgVDGVTPGRAYTLCVHSDNDLACNLVINLEMSKQVVPKELVKLA 628
                 5667888899************************************************9736899999*******99977777777899999999999998765 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   2.3e-08   8.5e-06      89     292 ..     361     568 ..     268     589 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.3e-08
   TIGR01970  89 saktrlevvteGiltrmlqdD.PeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGr........s.fPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldaseve..lcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsgla 292
                  + + + v t G l  +l+++  +L +  ++++De  +r ++      + + + +++r D + l+ satL+  r++ l +  ++++   r        s   v      l  +++    +++++   l  ++g vLvf+  ++  + ++ +L + ++ +ev+  +  ++G+l+   +   +++  +G ++v +at++a   l i G+  v++   a
  MMETSP1174-20130828|4493_1 361 KRGAEVVVATPGRLMELLRKNaTNLRRCTMVVLDEA-DRMFEMGFEYQM-RSIIDQIRPDRQTLLFSATLKR-RIQGLAN--AILRDPIRvtvgklgqSsEDVTQDVVVLVGNREKWSWLKNQLPGFL--KTGKVLVFVSSKSGCEELALNLRKFME-PEVAslIDFIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVA 568
                 444455566888888888765257999999999995.677766555544.5677899999999999999964.5666555..3333222200000100101222222222222222223334444433..5899*******************9998.8885336679*****************************************9976555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.029        11       6      54 ..     284     338 ..     280     363 .. 0.74
   2 !   17.0   0.0   1.4e-06   0.00053     127     319 ..     390     584 ..     367     629 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.029
   TIGR01587   6 APtGyGKteaallw..alklikkqkadk.....vifalPtratanamyerlkelfg 54 
                 A tG+GKt +a++w  + +l+++++ +k      ++  Ptr +a+ +y+ ++  ++
  MMETSP1174-20130828|4493_1 284 AQTGSGKT-LAFVWpmLVHLMDQRELEKgdgpiGLILAPTRELAEQIYHEAHRFMK 338
                 77*****8.67777335679999998884444447888*********998776433 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.4e-06
   TIGR01587 127 vliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeee...iiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisvdvlitelapidsLiQ...RlGRlaRy 319
                 ++++DE++ + e   +  +  +++ + + d + ll sAtl  +++ +++ i  +  + ++    ++  +  +  +++    e+ s l++ l  + k +kvl++v +     el  +l+  ++ e+   i+ +H+   +  r       l  +++  k v+vaT v+  +lDis    + +   +  + Q   R+GR  R 
  MMETSP1174-20130828|4493_1 390 MVVLDEADRMFEMGFEYqMRSIIDQI-RPDRQTLLFSATLKRRIQGLANAILRDPIRVTVGKLGQSSEDVTQDVVVLVGNREKWSWLKNQLPGFLKTGKVLVFVSSKSGCEELALNLRKFMEPEVaslIDFIHGDLDQGSRYTS----LTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNIEQhvhRIGRTGRM 584
                 68999999777666666355555555.5677899*******9999888887765333333322222222233335566677888999989************************999976655534679*******99999887....*************************766665554444444422266666665 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.094        35     502     581 ..     317     397 ..     311     434 .. 0.66
   2 !   15.1   0.0     3e-06    0.0011     659     737 ..     486     567 ..     479     603 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.094
   TIGR00580 502 avlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkakekkeilkelaeGkidiliGT....hkllqkd.vkfkdlgLliiDEEq 581
                  +l+PT  LaeQ +++ +  +k f+ k+  +   +    k e+ ++l++G  ++++ T     +ll+k+ ++ +   ++++DE  
  MMETSP1174-20130828|4493_1 317 LILAPTRELAEQIYHEAHRFMKPFGAKVVAVFGGAG---KWEMASALKRGA-EVVVATpgrlMELLRKNaTNLRRCTMVVLDEAD 397
                 689***************99*****99876654444...444444555554.455555222234454441345555666666655 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3e-06
   TIGR00580 659 Gqvfyvhnriesieklkeqlrelv.Pear..iaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierA 737
                 G+v + +   +  e+l+ +lr+++ Pe+   i  +Hg +++    + +++F +++ +vLv+T +   G+di+ + T++  + 
  MMETSP1174-20130828|4493_1 486 GKVLVFVSSKSGCEELALNLRKFMePEVAslIDFIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDV 567
                 66666666666677777778775448875337789***************************************99985544 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.073        27      15      78 ..     263     337 ..     256     342 .. 0.65
   2 !   13.0   0.0   1.3e-05    0.0048     445     522 ..     487     569 ..     481     585 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.073
   TIGR00631  15 pkaieklvesleagekeqvLlGvtGsGktftian..vi...ak..vqk...P.tlvlahnktLaaqLyeelkelf 78 
                 p+ai++ +   +   ++ + +  tGsGkt++  +  ++   ++  ++k   P  l+la+ + La q+y+e + ++
  MMETSP1174-20130828|4493_1 263 PTAIQAATLPATLSGRDIIGIAQTGSGKTLAFVWpmLVhlmDQreLEKgdgPiGLILAPTRELAEQIYHEAHRFM 337
                 66666666666666677777788999999876543233111221122222244599************9998876 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.3e-05
   TIGR00631 445 rvlvttltkkmaedlt....dylk.elgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadk 522
                 +vlv +  k  +e+l+    ++++ e+   + ++h ++d   r + ++ +r+g+ +vlv  ++   GlD+  ++ v  +D  k
  MMETSP1174-20130828|4493_1 487 KVLVFVSSKSGCEELAlnlrKFMEpEVASLIDFIHGDLDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAK 569
                 66777666655555441111666535566789******************************************999999776 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.78   2.9e+02       6      54 ..     286     345 ..     283     371 .. 0.59
   2 ?    9.9   0.0   0.00014     0.053     270     346 ..     494     571 ..     484     586 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.78
   TIGR00595   6 tGSGKtEvyl.....kviek.vlakgks..vlvLvPEiaLtaqll...krlkerfgseva 54 
                 tGSGKt  ++     +++++  l+kg     l+L P   L+ q+    +r+ + fg++v+
  MMETSP1174-20130828|4493_1 286 TGSGKTLAFVwpmlvHLMDQrELEKGDGpiGLILAPTRELAEQIYheaHRFMKPFGAKVV 345
                 899999877521111223221344443322577788888888886222466677777665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00014
   TIGR00595 270 kglGtekveeelkkllpkariarldsDttr.rkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsgl 346
                  ++G e+++ +l+k+++    + +d  +    +++   +l++f++g  ++l+ t + a+Gld   +t+v+  ++ + +
  MMETSP1174-20130828|4493_1 494 SKSGCEELALNLRKFMEPEVASLIDFIHGDlDQGSRYTSLTAFRNGSKQVLVATDVAARGLDISGITTVVNFDVAKNI 571
                 567888899999999887777777655544135566899****************************99876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.85u 0.20s 00:00:01.05 Elapsed: 00:00:00.61
# Mc/sec: 1778.61
//
Query:       MMETSP1174-20130828|4497_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|4498_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|4499_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|4502_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-24   84.7  12.1    1.3e-24   84.5   8.4    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    5.7e-05   19.9   4.1    6.9e-05   19.6   2.8    1.1  1  TIGR00898 2A0119: cation transport protein
  ------ inclusion threshold ------
       0.02   11.6   3.8      0.025   11.3   2.7    1.1  1  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   8.4   9.6e-28   1.3e-24     413     510 .]       1      97 [.       1      97 [. 0.98

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 9.6e-28
   TIGR00879 413 aivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 a+++++lf+aa+++gigp++w+lvsE+fpl +R+k+ +ia+ +n + + +i l+f++m + ++++++ F ff + ++ ++i+vy+ lpetkg+tleei
  MMETSP1174-20130828|4502_1   1 AVFSLCLFMAAFSIGIGPICWLLVSELFPLYLRAKALSIATFVNRITASLIVLTFLSMAK-AMTFAGYFGFFCVVSFGTFIFVYVSLPETKGKTLEEI 97 
                 5799********************************************************.8****99*****************************8 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   2.8     5e-08   6.9e-05     430     505 ..      19      96 ..       2      97 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5e-08
   TIGR00898 430 maylytaELYPTvvRnlgvgvcstmarvGsiisPflvyv.lgevslflplvifgvlal.lagllsllLPetkgvaLpe 505
                 +  l+++EL+P  +R+ +++++  + r+ + +  + ++  ++++    +++ f v+   +++ + ++LPetkg++L+e
  MMETSP1174-20130828|4502_1  19 ICWLLVSELFPLYLRAKALSIATFVNRITASLIVLTFLSmAKAMTFAGYFGFFCVVSFgTFIFVYVSLPETKGKTLEE 96 
                 457899**********************997765555530333444444555555443256677899********987 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.7   1.8e-05     0.025     396     501 ..       1      99 [.       1     100 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
   TIGR00887 396 alyvlaqfFanF..GPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilft.lLiPetkgksleelsr 501
                 a+++l+ f a F  G     +++ +e+FP  lR+ a  i+  + ++ a +  l+++ +a+          ++ +   +  f++v +   +f  + +Petkgk+lee+ +
  MMETSP1174-20130828|4502_1   1 AVFSLCLFMAAFsiGIGPICWLLVSELFPLYLRAKALSIATFVNRITASLIVLTFLSMAK----------AMTFAGYFGFFCVVSFGTFIFVyVSLPETKGKTLEEITK 99 
                 5789999988876656667889999***********999999999998887777777766..........23344556678888887755541569**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1174-20130828|4501_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1404.50
//
Query:       MMETSP1174-20130828|4508_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|4514_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|4515_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|4519_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|4517_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   39.2   0.0    2.5e-10   38.4   0.0    1.4  1  TIGR01044 rplV_bact: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR01044  rplV_bact: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   6.2e-14   2.5e-10       5     101 ..      65     161 ..      60     163 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 6.2e-14
   TIGR01044   5 tvrisprkarlvidlirGkevaealdiLeftpkkaaelvekvlksaianaehnneldadelvvakvfvdeGPtlkrirprakGrasrirkrtshitv 101
                 ++  sp +  l+++++r  +++ea++  +++pkk+ ++ +  ++ a+  a++  ++ a el+v ++fv +GP  k+++   +G++     r sh+++
  MMETSP1174-20130828|4517_1  65 NISYSPWRMNLIAKQLRRLDAQEAIAQGDMSPKKGGRIASSLIQKAADRAQRTFGVHASELLVDQIFVTQGPGKKKLKIMGRGKTGLQFVRSSHLNI 161
                 456789999********************************************************************99888888888889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 937.12
//
Query:       MMETSP1174-20130828|4521_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|4523_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 251.60
//
Query:       MMETSP1174-20130828|4525_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|4529_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   21.8   0.1    3.2e-05   21.4   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
      6e-05   20.3   0.0    7.8e-05   19.9   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00012   19.3   0.0    0.00017   18.8   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00035   18.3   0.0    0.00069   17.3   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.1e-08   3.2e-05     107     149 ..      59     101 ..       3     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.1e-08
   TIGR02752 107 elpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvc 149
                  lpy d+s+d vt    +  +   ++v++e++rv++pggk + 
  MMETSP1174-20130828|4529_1  59 VLPYGDESMDVVTCVVSVDYLTKPIDVFREVNRVLRPGGKFIL 101
                 49**************************************874 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.6e-08   7.8e-05     114     168 ..      64     118 ..      35     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.6e-08
   TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpggilflstinrtlksyllaivla 168
                 +es Dvv+++  ++  +++ ++ +e+ ++l+pgg+ +ls  nr + s ++a++++
  MMETSP1174-20130828|4529_1  64 DESMDVVTCVVSVDYLTKPIDVFREVNRVLRPGGKFILSQSNRLFFSKAVALWIG 118
                 6789********************************************9999875 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.6e-07   0.00017      99     141 ..      59     101 ..      21     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.6e-07
   TIGR01934  99 eLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvi 141
                  Lp+ d+s+d+vt+   +  +t+   + +e++RVl+pgg++++
  MMETSP1174-20130828|4529_1  59 VLPYGDESMDVVTCVVSVDYLTKPIDVFREVNRVLRPGGKFIL 101
                 499*************************************975 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.7e-07   0.00069      80     134 ..      46     103 ..      30     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.7e-07
   TIGR02072  80 nvqficgdiek...lplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafst 134
                   +f + d++k   lp  ++s+D++++ +++  l ++  v++e++rvl+pgG +++s 
  MMETSP1174-20130828|4529_1  46 LTSFAATDLNKrpvLPYGDESMDVVTCVVSVDYLTKPIDVFREVNRVLRPGGKFILSQ 103
                 356777777773335667899**********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 675.47
//
Query:       MMETSP1174-20130828|4533_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-30  101.5   0.0    2.5e-28   96.7   0.0    1.9  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.2e-28   97.9   0.0    3.3e-28   96.5   0.0    1.6  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.7e-26   91.0   0.0      2e-25   87.5   0.0    1.9  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.1e-18   62.2   0.0    9.9e-18   61.9   0.0    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.2e-05   21.9   0.0    1.7e-05   21.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      8e-05   20.1   0.0    0.00012   19.5   0.0    1.2  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0073   13.2   0.0      0.011   12.7   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0083   12.8   0.0      0.012   12.3   0.0    1.2  1  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
  ------ inclusion threshold ------
      0.014   12.8   0.1       0.26    8.6   0.0    2.2  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.014   12.1   0.0      0.018   11.7   0.0    1.2  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.018   11.8   0.0      0.025   11.4   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      0.027   12.0   0.0      0.063   10.8   0.0    1.7  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
       0.03   11.4   0.0      0.041   10.9   0.0    1.2  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.058    9.6   0.0      0.075    9.3   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   8.4e-31   2.5e-28     491     674 ..       3     213 ..       1     215 [. 0.74

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 8.4e-31
   TIGR01243 491 llfgppgtgktllakavate..sganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea.vtdrivnqllteldglee.....nsdvvviaatnrpdildpallrpgrldrlilvpapdeearlei...fkiht...........rslplaedvdlee.....lakktegytgadieavvreaalaalr 674
                 +l+gp gtgkt la+a+a e   +  f+ v+  +++    gese++i ++f+ ar ++p++i+ld ++ +ap+r +  s     dri+  ll eldg        +  v+v+a+++    +d a+lrpgrld+ i +  p    r  i   +  ht           r+   +e+ d +      la++t g tgad+  +++eaal  l 
  MMETSP1174-20130828|4533_1   3 VLHGPSGTGKTALARALAWElrRDVRFLEVQCTDLVHAHTGESERTIVRLFHAARVSSPTLILLDHLEVLAPSRKHASSYDhTMDRILSTLLVELDGAASgggqvEGXVLVMATAQDLSAIDGAMLRPGRLDQHIPILLPGTPQRSSIaaaILAHTpvvrpekkhgaREGGGGEEADARAvlcdwLAEQTPGATGADLVQLCQEAALVCLD 213
                 799***************98335788***********************************************98877765478************986522211345667777777899************998766666666655521144566222222111112223345555443222239********************98876 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.1e-30   3.3e-28      93     282 ..       3     217 ..       1     223 [. 0.83

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 1.1e-30
   TIGR01241  93 llvGpPGtGktLlakavaGea..gvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfet.....negvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla...................eevdlkkvarrtpGfsGadlanlvneaallaarknkk 282
                 +l Gp GtGkt la+a+a e   +v f+++  +d+v    G     +  lf+ a+ ++P++i++D ++ +  +r+++ ++     ++ L  lLve+DG  +     +  v+v+a++     +D a+lrPGr+D+++ + +P   +r++i +  + ++ +                    + v  + +a++tpG++Gadl  l+ eaal++  + k+
  MMETSP1174-20130828|4533_1   3 VLHGPSGTGKTALARALAWELrrDVRFLEVQCTDLVHAHTGESERTIVRLFHAARVSSPTLILLDHLEVLAPSRKHA-SSYDHTMDRILSTLLVELDGAASgggqvEGXVLVMATAQDLSAIDGAMLRPGRLDQHIPILLPGTPQRSSIAAAILAHTPVVrpekkhgareggggeeadaRAVLCDWLAEQTPGATGADLVQLCQEAALVCLDESKA 217
                 799****************9633799************************************************995.44456789***********986522221344899999999*****************************9976544444433344556678889886555445556679*********************98777665 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   6.8e-28     2e-25     159     350 ..       2     218 ..       1     222 [. 0.79

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 6.8e-28
   TIGR01242 159 vllyGppGtGktllakavaeetn..atfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdp.....rgnvkviaatnrldildpallrpGrfdrlievplpdleGrlei...lkiht......rkmkla......edvdlee.....laklteGasGadlkaivteaGmfaireerdk 350
                 ++l+Gp GtGkt la+a+a e +    f+ v +++lv+ + Ge  r +  +f+ a+  +p++i++d ++ +a  r + ++s d  ++r l  ll eldG  +      g v v+a+++ l  +d a+lrpGr+d+ i + lp    r  i   +  ht      +  + a      e+ d ++     la+ t Ga+Gadl  ++ ea +  + e++++
  MMETSP1174-20130828|4533_1   2 LVLHGPSGTGKTALARALAWELRrdVRFLEVQCTDLVHAHTGESERTIVRLFHAARVSSPTLILLDHLEVLAPSRKH-ASSYDHTMDRILSTLLVELDGAASgggqvEGXVLVMATAQDLSAIDGAMLRPGRLDQHIPILLPGTPQRSSIaaaILAHTpvvrpeK-KHGAreggggEEADARAvlcdwLAEQTPGATGADLVQLCQEAALVCLDESKAE 218
                 579****************99752278*********************************************99965.5789****************986622222567889999999************************9999988322335763332221.11111222224555544222227999****************99998887765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   3.4e-20   9.9e-18     219     381 ..       2     158 ..       1     191 [. 0.80

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 3.4e-20
   TIGR03689 219 vllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdve.ttvvPqllaeldGves....len.viviGasnredlidPailrPGrldvkirierPdaeaaadilakylted 381
                 ++l+GP G+Gkt +a+a+a  l +           fl+++  +l++ + Ge+er i  +f+ ar      +P ++++d ++ l   r    s d     ++  ll eldG  s    +e  v+v+  +     id a+lrPGrld  i i  P + + + i a  l+++
  MMETSP1174-20130828|4533_1   2 LVLHGPSGTGKTALARALAWELRR--------DVRFLEVQCTDLVHAHTGESERTIVRLFHAARV----SSPTLILLDHLEVLAPSRKHASSYDHTmDRILSTLLVELDGAASgggqVEGxVLVMATAQDLSAIDGAMLRPGRLDQHIPILLPGTPQRSSIAAAILAHT 158
                 579***********9999998876........457*************************99996....57*****************9999996525799********986522225541566666666799*****************9999988888877766543 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.7e-08   1.7e-05     315     410 ..       2      97 ..       1     101 [. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.7e-08
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaL...ggvlFlDEayaLvek..rdgakddfGleaidtLLarl 410
                 l+l GP GtGkt++Ar++a       + r  +  Ev+ +dl+  + gese    +l   a      ++ lD +  L     +  + d+    ++ tLL+ l
  MMETSP1174-20130828|4533_1   2 LVLHGPSGTGKTALARALAWE-----LRRDVRFLEVQCTDLVHAHTGESERTIVRLFHAARvssPTLILLDHLEVLAPSrkHASSYDHTMDRILSTLLVEL 97 
                 799***************976.....568889******************999999887642214678888887777652133445666667788888876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.1e-07   0.00012      25      75 ..       3      49 ..       1      59 [. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.1e-07
   TIGR02640 25 hlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeagyerkkv 75
                 l GP+GtGkt+la+++a ++ r v +l    e++ +dlv  ++g  ++ +
  MMETSP1174-20130828|4533_1  3 VLHGPSGTGKTALARALAWELRRDVRFL----EVQCTDLVHAHTGESERTI 49
                589**********************998....5778888888888777665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.6e-05     0.011      33      60 ..       2      29 ..       1      43 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.6e-05
   TIGR00635 33 vllyGPPGlGkttlakiiakelgvklki 60
                ++l GP G Gkt+la+ +a el+ +++ 
  MMETSP1174-20130828|4533_1  2 LVLHGPSGTGKTALARALAWELRRDVRF 29
                5799******************999886 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     4e-05     0.012     166     201 ..       3      37 ..       1      46 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-05
   TIGR02915 166 lllGesGtGkevlaralhelsdrkdkrfvaincaai 201
                 +l+G sGtGk  laral     r+d rf+ + c+ +
  MMETSP1174-20130828|4533_1   3 VLHGPSGTGKTALARALA-WELRRDVRFLEVQCTDL 37 
                 79**************95.789***********865 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0009      0.26      41     106 ..       2      76 ..       1      93 [. 0.68
   2 ?    1.9   0.0     0.098        29      73     139 ..     189     253 ..     176     255 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0009
   TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll........vev..legleqaelvalDdvealager 106
                 l l G+sg+Gk+ L +A++ +++ ++ + + +++ +l++++        v +   +  ++ +l+ lD++e+la +r
  MMETSP1174-20130828|4533_1   2 LVLHGPSGTGKTALARALAWELR-RDVRFLEVQCTDLVHAHtgesertiVRLfhAARVSSPTLILLDHLEVLAPSR 76 
                 5799***************9996.5577777777777776633333222223223445566788888888887776 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.098
   TIGR03420  73 plkelaqllvevlegleqaelvalDdvealagereweealfdlynrlresgrkllvageaaPaelkl 139
                   ++   + +++++  ++a+lv+lD+ +a  g++     +++l  +  ++g    +++++aP+ l++
  MMETSP1174-20130828|4533_1 189 AEQTPGATGADLVQLCQEAALVCLDESKAELGNP--SGCVLSLAASHFKKGLCAAASAHRAPSYLEV 253
                 44455556678999999********999988888..7788888877777777777888888877765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-05     0.018      44      78 ..       3      35 ..       1      63 [. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.2e-05
   TIGR02928 44 liyGktGtGKtavtkkvlkeleeaaeekdvrvstv 78
                ++ G++GtGKta ++++  el+++++  +v+   +
  MMETSP1174-20130828|4533_1  3 VLHGPSGTGKTALARALAWELRRDVRFLEVQ--CT 35
                789*******************999865443..33 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.4e-05     0.025     121     175 ..       3      57 ..       1      79 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.4e-05
   TIGR00382 121 lliGptGsGktllaqtlakel..dvpfaiadattlteaGyvGedvenillkllqaad 175
                 +l Gp+G+Gkt la++la el  dv f     t l  a + Ge  e  + +l++aa 
  MMETSP1174-20130828|4533_1   3 VLHGPSGTGKTALARALAWELrrDVRFLEVQCTDLVHA-HTGES-ERTIVRLFHAAR 57 
                 688***************99866899999999999998.56775.677778888875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022     0.063      29      96 ..       2      71 ..       1     102 [. 0.69
   2 ?   -2.8   0.0       3.2   9.4e+02     145     186 ..     206     246 ..     202     253 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
   TIGR01189 29 lvveGpnGiGKttLLRilaGLlkpesGevelndkel.aeqrdelaeellylgHldglK.aeLsalEnLkf 96
                lv++Gp G+GKt+L R la  l+ +   +e++ ++l + ++ e ++++  l H++ +  ++L  l+ L+ 
  MMETSP1174-20130828|4533_1  2 LVLHGPSGTGKTALARALAWELRRDVRFLEVQCTDLvHAHTGESERTIVRLFHAARVSsPTLILLDHLEV 71
                799****************888777766666555531444556667777777776664245555555555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.2
   TIGR01189 145 kaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 +a l  LDE  + l + +  +l +l a+H ++g  + +++h 
  MMETSP1174-20130828|4533_1 206 EAALVCLDESKAELGNPSGCVL-SLAASHFKKGLCAAASAHR 246
                 5677788888888877665544.5667888887766666665 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014     0.041      40      60 ..       3      23 ..       1      37 [. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   TIGR02397 40 LfsGprGvGKTsiArilAkal 60
                ++ Gp G+GKT++Ar lA  l
  MMETSP1174-20130828|4533_1  3 VLHGPSGTGKTALARALAWEL 23
                689**************9766 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00026     0.075     356     380 ..       2      26 ..       1      34 [. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrk 380
                 l+l+GP G GKt+la+++A  l+r 
  MMETSP1174-20130828|4533_1   2 LVLHGPSGTGKTALARALAWELRRD 26 
                 789****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|4530_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   54.2   2.1    3.1e-15   54.1   1.5    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   1.5   7.6e-19   3.1e-15       1      73 [.       1      70 [.       1      99 [. 0.85

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 7.6e-19
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvm 73
                +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  + ++
  MMETSP1174-20130828|4530_1  1 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
                8999*******************************...**************************988765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|4538_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 852.85
//
Query:       MMETSP1174-20130828|4542_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1338.10
//
Query:       MMETSP1174-20130828|4543_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|4553_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       389  (0.0948318); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 663.51
//
Query:       MMETSP1174-20130828|4551_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 431.38
//
Query:       MMETSP1174-20130828|4554_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1174-20130828|4555_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.5   0.0      0.012   12.9   0.0    2.3  2  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     3e-06     0.012      99     254 ..      87     233 ..      16     234 .. 0.67
   2 ?    0.7   0.0     0.017        68     147     194 ..     622     668 ..     619     678 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3e-06
   TIGR00633  99 fdeltvvnvYvPngeardlerleyklefweallaklekeldkekpvvlcGDlNvaheeiDlanpk..enkkkagfteeerealdelleagfvDtfrklnpekeeaYtwwdyrskareknvGwRiDyilvsealaekvvdslidsevrg.SDHaPvvlel 254
                   ++++  +Y P g       le++ ef+ + l+ + +++++++ ++++ D N +      ++ +  e+ + +++ ++ r++ d l ++g+    r + +++   +tw   rsk         iD++++ ++ +++vvd+ i+  +   SDH+P+ l +
  MMETSP1174-20130828|4555_1  87 STQVVLGCGYAPVGA----APLEERTEFL-NSLSRIVSNVENREVLIITVDANASLGTKTCTSDRvlEKWGLPHVNDAGRDTHDFLATHGLCAPSRFFEKKH--FHTWRHPRSK-----LPHQIDHFFTFQRDLKRVVDAGISPMMAVeSDHTPISLRI 233
                 456666677777777....6678888444.455566677888888888888888876666665441144678888888888888888888888888887766..3566444443.....4557*******************9877656******9976 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.017
   TIGR00633 147 cGDlNvaheeiDlanpkenkkkagfteeerealdelleagfvDtfrkl 194
                 +G l + ++  Dl np++  + ++++++  + l+++l++ ++D + + 
  MMETSP1174-20130828|4555_1 622 VGRLKIFPKKGDLSNPNSS-RGIMLLDAASNVLSSILSERLQDLLHEE 668
                 78889999********965.5688999999************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.56
# Mc/sec: 1685.76
//
Query:       MMETSP1174-20130828|4556_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       573  (0.139688); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 882.96
//
Query:       MMETSP1174-20130828|4560_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 1878.02
//
Query:       MMETSP1174-20130828|4561_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 227.31
//
Query:       MMETSP1174-20130828|4562_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1174-20130828|4570_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 2078.83
//
Query:       MMETSP1174-20130828|4572_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1520.32
//
Query:       MMETSP1174-20130828|4577_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.39
# Mc/sec: 206.44
//
Query:       MMETSP1174-20130828|4578_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1174-20130828|4583_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1543.26
//
Query:       MMETSP1174-20130828|4585_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-09   33.6   0.4    1.8e-08   31.9   0.0    1.9  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    2.5e-08   31.1   0.1    5.3e-08   30.0   0.1    1.5  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
      4e-07   27.5   0.0    6.3e-07   26.9   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    0.00031   18.3   0.4     0.0014   16.1   0.0    2.0  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0013   16.0   0.0      0.002   15.3   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D
     0.0067   13.6   0.0      0.011   12.9   0.0    1.3  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
     0.0085   13.2   0.0      0.012   12.6   0.0    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.1e-11   1.8e-08      13     110 ..     185     284 ..     172     297 .. 0.91
   2 ?   -1.3   0.0      0.43   2.5e+02     195     217 ..     346     368 ..     337     375 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 3.1e-11
   TIGR02427  13 kpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkr..GHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvls 110
                  p ++l+  L t+ + w  v+  l++  rv+ +D      G S+  +g ++ +d+a+ ++ l+ ++g  +++vcG S GG ++    +++p +v++l+l+
  MMETSP1174-20130828|4585_1 185 FPPILLVHGLHTTSACWFFVALLLARTRRVITVDLLdfNFGFSKTAHGGAGQDDHANSLAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLL 284
                 58899*****************************862268********************************************************9986 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.43
   TIGR02427 195 PtlviaGdeDgstPpelvreiad 217
                 Pt++i Gd D+ + p+ v ++++
  MMETSP1174-20130828|4585_1 346 PTMLIWGDRDALCRPKPVSQLVT 368
                 9************9999988876 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1     9e-11   5.3e-08      20     121 ..     173     279 ..     158     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 9e-11
   TIGR03056  20 vrdeGpaaG....PvllllhGagasshsfrklvpllaarfrvvapdlPG..hGftratarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvrPr 121
                  +d G  +     P +ll+hG+ ++s  +  +  lla+  rv+++dl     Gf++++     + +  a+ la l+++ +     v Ghs G+++  r+  + p   r
  MMETSP1174-20130828|4585_1 173 AHDSGDNEYskrfPPILLVHGLHTTSACWFFVALLLARTRRVITVDLLDfnFGFSKTAHG-GAGQDDHANSLAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVR 279
                 5555554446666999*******************************8622577777666.8999*********************************9988776544 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.1e-09   6.3e-07       3     109 ..     186     292 ..     184     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.1e-09
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsvlalDLpgH..GkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesa.spGLe 109
                 p ++l+HG+  +++ w  ++  l+++ +v+++DL+    G sk+   +  +  ++ a+  l+ l ++++  +v ++G S GG +  ++ +e+p+ +++l+l s  s+G++
  MMETSP1174-20130828|4585_1 186 PPILLVHGLHTTSACWFFVALLLARTRRVITVDLLDFnfGFSKTA--HGGAGQDDHANS-LAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLLSPfSIGIH 292
                 6799******************************97511666655..566777777788.89999*********************************998774266766 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.4e-06    0.0014       7      98 ..     188     286 ..     183     296 .. 0.74
   2 ?   -0.7   0.0      0.33   1.9e+02     190     210 ..     346     366 ..     338     375 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.4e-06
   TIGR01738   7 lvLihGWglnaevfadlveeLsahftlslvDLP..GyGdsaelr.alslaevaeail...aqa.pakaiwlGWsLGGLvalhlalthpdkvrsLvlvas 98 
                 ++L+hG    ++ +  ++  L  + ++  vDL    +G s++ +  +  ++ a++++   + +   + ++ G s GG v+ + +++hp  vr L+l++ 
  MMETSP1174-20130828|4585_1 188 ILLVHGLHTTSACWFFVALLLARTRRVITVDLLdfNFGFSKTAHgGAGQDDHANSLAvlvQSIgSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLLSP 286
                 78*****************************9622346554443133344444433311133313457799***********************99865 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.33
   TIGR01738 190 PvLrlyGqkDalvPakvveal 210
                 P+++++G +Dal  +k v++l
  MMETSP1174-20130828|4585_1 346 PTMLIWGDRDALCRPKPVSQL 366
                 899*********988877776 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-06     0.002      14     112 ..     186     285 ..     174     306 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-06
   TIGR03611  14 evvvlssGLGGsgsywapqlevleqefrvvvyDhrGtgrspee.laedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvlin 112
                 + ++l  GL   ++ w     +l+++ rv++ D    +   ++    + + ++ a+ +  l+++++  +++v Gh+ Gg ++  ++ ++p+ + +l+l+ 
  MMETSP1174-20130828|4585_1 186 PPILLVHGLHTTSACWFFVALLLARTRRVITVDLLDFNFGFSKtAHGGAGQDDHANSLAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLLS 285
                 5689999999999999998889999999999998776655444044556778899****************************************99876 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05     0.011      51     122 ..     211     284 ..     180     301 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
   TIGR02240  51 eleviafdvp..gvggsstprvpyrfpglaklaarmldyldygqvnvigvswggalaqqfahdyperckklvla 122
                    vi++d+     g s t +        a+  a +++ +  gqv+v g s+gg+++++f+ ++p  +++l+l 
  MMETSP1174-20130828|4585_1 211 TRRVITVDLLdfNFGFSKTAHGGAGQDDHANSLAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLL 284
                 55566666541134555566556666667777888999999***************************999875 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05     0.012      87     138 ..     239     290 ..     171     310 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
   TIGR03343  87 naravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglg 138
                  a ++  l+++++  +  + g s gg+ +  f++e+p  + +l+l+ p  +g
  MMETSP1174-20130828|4585_1 239 HANSLAVLVQSIGSGQVDVCGHSYGGSVSHRFSVEHPSLVRRLLLLSPFSIG 290
                 466777799999999*********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.64
# Mc/sec: 969.29
//
Query:       MMETSP1174-20130828|4587_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1174-20130828|4592_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1411.27
//
Query:       MMETSP1174-20130828|4599_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|4600_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1459.01
//
Query:       MMETSP1174-20130828|4603_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|4605_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 467.62
//
Query:       MMETSP1174-20130828|4609_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|4615_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 603.38
//
Query:       MMETSP1174-20130828|4614_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|4618_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1003.12
//
Query:       MMETSP1174-20130828|4619_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|4624_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1064.71
//
Query:       MMETSP1174-20130828|4629_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 298.71
//
Query:       MMETSP1174-20130828|4632_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-15   53.9   0.0    5.8e-15   53.7   0.0    1.0  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.4e-18   5.8e-15     125     219 ..      25     119 ..       8     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.4e-18
   TIGR02933 125 ltrhlLltvned.dreavrerieallrrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlCea 219
                    h+L+ +    d e   e++  + + + +++++f ela+ +s CP+a  gG+LG+ +rG++ p+ d+ +f+ + g +  ++ +  G hl++ e+
  MMETSP1174-20130828|4632_1  25 QASHILIPIPTSaDIEPTMEKLCEI-KAMCTDQDQFRELAKEYSSCPSAQIGGRLGEFGRGTMAPKFDDVVFTEEVGTVQGPVRTIYGGHLIWIES 119
                 4589999994333555566666555.788999*************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 507.33
//
Query:       MMETSP1174-20130828|4633_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 522.68
//
Query:       MMETSP1174-20130828|4634_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-37  126.9   3.4      6e-21   72.8   0.2    2.6  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
      9e-23   78.3   0.0    3.1e-12   43.6   0.0    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.4e-19   68.5   3.1    3.8e-10   37.4   0.0    2.3  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.4e-16   58.8   0.0    6.5e-08   30.3   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    5.9e-14   49.5   1.5    7.1e-14   49.3   0.5    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      5e-10   37.4   0.2     0.0023   15.4   0.0    2.0  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.7e-09   33.7   0.1      5e-09   33.3   0.1    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.26   1.5e+02     320     358 ..      11      52 ..       2      66 .. 0.49
   2 !   55.1   0.0   2.4e-18   1.4e-15     203     295 ..      60     150 ..      32     162 .. 0.83
   3 !   72.8   0.2     1e-23     6e-21     213     297 ..     161     247 ..     144     356 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.26
   TIGR01622 320 qsgldlnteereqldekldrddekgs...galaiagtdskav 358
                 q++ + +++e++++d ++d +++++    +a a ++t+s av
  MMETSP1174-20130828|4634_1  11 QTSSEEQSTEETKVDTQVDSGEQATQaekTAEAQPETQSTAV 52 
                 333344444444455555555444433334444444444444 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 2.4e-18
   TIGR01622 203 akaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                 ++ a  ++ + +  ++  k++vG+l  + + + +++ F  FG++ +v l++D etGrs+G+GF++F++a  a + l+      l GRe+   +
  MMETSP1174-20130828|4634_1  60 QQVAPSQPATEKRNASCAKIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVAEKVLNIQH--SLDGRELNLNS 150
                 4456677778899999***************************************************9999888765544..44477766655 PP

  == domain 3    score: 72.8 bits;  conditional E-value: 1e-23
   TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeake..AleklNGlelAGReikvglas 297
                   ++ + ++LY+G+l+++ +E e+r  Fe+FG+ie++ ++k+p+tG s+G+GF+ F+d e a +  A+  + G+++   + k++ a+
  MMETSP1174-20130828|4634_1 161 ADGTEPVKRLYIGDLLSSTSEAEMRAAFESFGDIEDIVIMKNPDTGESRGFGFVSFRDVESANKvlAQGDVSGFQVGSSKAKITKAQ 247
                 34556799******************************************************9933455689999988888888766 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.9e-12     4e-09     257     363 ..      39     146 ..       9     156 .. 0.74
   2 !   43.6   0.0   5.3e-15   3.1e-12     289     426 ..     160     317 ..     140     330 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.9e-12
   TIGR01642 257 RphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAi...aaLnGikl 363
                 +  + +P  + t    +++++  +       +++    s  k+++g+L  +   + vk+   +FG++    l +d++tG s+G++F+ ++++ v++  +   ++L+G +l
  MMETSP1174-20130828|4634_1  39 KTAEAQPETQSTAVELKPEPEQQVAPS--QPATEKRNASCAKIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVAEKVLniqHSLDGREL 146
                 555555555555555555555555444..334444556778******************************************************975422467887665 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 5.3e-15
   TIGR01642 289 sktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtd..lAiaaLnGiklgdkkLnvkrAtvgakqatieken..................sdvlvtllakalsqsilqiGekptkvvqLtnlvlaedlld 426
                 +  +++  ++lyig+L     +  ++   esFGd+    ++K+ +tG s+G++F+ ++d   ++  lA   + G+++g  k ++ +A     +++   +                   ++v ++ ++ +    +l+  ++   vv +  +++aed+ +
  MMETSP1174-20130828|4634_1 160 AADGTEPVKRLYIGDLLSSTSEAEMRAAFESFGDIEDIVIMKNPDTGESRGFGFVSFRDVESANkvLAQGDVSGFQVGSSKAKITKAQPKGAPTMRGGKGmmggkgagggisgkgareAKVTLAAMVASQVDMVLSSSGRDMTVVDMARVMVAEDVEE 317
                 555677789**************************************************99888334566799**************9988888887777999************988888888888999999999999*************999865 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.3      0.39   2.3e+02     400     511 ..      31      64 ..       2      78 .. 0.27
   2 !   29.1   0.0     2e-10   1.2e-07       2      60 ..      78     136 ..      74     154 .. 0.85
   3 !   37.4   0.0   6.4e-13   3.8e-10     286     344 ..     168     227 ..     159     251 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.39
   TIGR01628 400 rhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqskn.qmqqvvqdnnlp 511
                  +qa+q+++                                                                                 +aqp++qs + ++++ ++++  p
  MMETSP1174-20130828|4634_1  31 GEQATQAEK-------------------------------------------------------------------------------TAEAQPETQSTAvELKPEPEQQVAP 64 
                 111111111...............................................................................1111221222212222222222222 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2e-10
   TIGR01628   2 SlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAld 60 
                  ++vG+L  +   +++ ++F+++g+v+ v + rD  t rS g+++v fq+ a Ae+ l+
  MMETSP1174-20130828|4634_1  78 KIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVAEKVLN 136
                 68999999999999999999999999999999999999999999999999999999886 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 6.4e-13
   TIGR01628 286 vNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvt 344
                 + lY+  l  +  ++++r  Fe fG+i    +m + ++++S+gFGFV+f + e Ank + 
  MMETSP1174-20130828|4634_1 168 KRLYIGDLLSSTSEAEMRAAFESFGDIEDIVIMKNpDTGESRGFGFVSFRDVESANKVLA 227
                 679*******************************9899******************9875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.1e-10   6.5e-08     264     341 ..      62     147 ..       3     155 .. 0.62
   2 !   26.4   0.0   1.7e-09     1e-06      10      83 ..     174     249 ..     165     259 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.1e-10
   TIGR01661 264 a.........sdgagycifvynlspdtd.eavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnG.ytlgnrvlq 341
                           ++++   ifv  l+ +t  e+v   f++fG v++v + rd +t + +G+gfv+   ++eaa+a + ln   +l +r l 
  MMETSP1174-20130828|4634_1  62 VapsqpatekRNASCAKIFVGGLAWETSmETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVT---FQEAAVAEKVLNIqHSLDGRELN 147
                 12233333334555667*******998648888*****************************9...57888888888741346666555 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.7e-09
   TIGR01661  10 ylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavns..lnGlrlqnktikvsyarPs 83 
                  l  + ++ e+r+ f s+G+ie + ++++  tG s G+Gfv + + e a+k ++   + G+++ +   k++ a+P 
  MMETSP1174-20130828|4634_1 174 DLLSSTSEAEMRAAFESFGDIEDIVIMKNPDTGESRGFGFVSFRDVESANKVLAQgdVSGFQVGSSKAKITKAQPK 249
                 556677899**********************************999999997754227788888877888877775 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.5   1.2e-16   7.1e-14      88     290 ..      60     255 ..      36     335 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.2e-16
   TIGR01645  88 qqlenqqrqvqrqqalaimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmnga.llGGrnlkvgrPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnl..fdlGGqllrvGkavtPPdallqPatv 290
                 qq +  q ++ + +  +  +++ vG + +e   +t++  f+ fGP+  + +  d  t++ +gf fv    eaa +a   +n +  l Gr+l ++     p   +i  + ++ +   +r+ +  +    se ++++ fe+fG+i +  + ++p +++ +GfGf+ f + +s ++ +a  ++  f +G    ++ k     ++  +P+  
  MMETSP1174-20130828|4634_1  60 QQVAPSQPATEK-RNAS-CAKIfVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVT-FQEAA-VAEKVLNIQhSLDGRELNLNS--ATP--ERIDSRAADGTEPVKRLyIGDLLSSTSEAEMRAAFESFGDIEDIVIMKNPDTGESRGFGFVSFRDVESANKVLAQGDVsgFQVGSSKAKITK----AQPKGAPTMR 255
                 666666666333.3334.45666*******************************************6.55655.788888876269***997763..223..23333445556667888899*************************************************99998754422555555444444....4444444444 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.9e-06    0.0023     195     248 ..      78     131 ..      61     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.9e-06
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreea 248
                  ++v  l+   + + ++  f k+g +v+  + rd+ tg+ rg  fv f+    a
  MMETSP1174-20130828|4634_1  78 KIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVA 131
                 5677777777788888899*********9999***************9876555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   8.4e-12     5e-09     139     323 ..      77     264 ..      72     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 8.4e-12
   TIGR01648 139 crlfvGgiPktkkreeileelkkvteGvvdvivyasaadkkknrGfafveyeshraaamarrkllpGriklWGhviavdWaePe.ve.vdedvmakvkilyvrnlmletteeiieksfsefkpGavervkkird........yafvhfedreda..vkamdelnGkeleGseievtlakPvdkesyvrytkaakgrg 323
                 +++fvGg+      e + + ++k    vvdvi+  +  +  + rGf fv +++   aa a  k+l  +  l G+++ ++ a Pe ++    d  + vk ly+ +l+ +t+e  ++  f+ f  G +e +  +++        + fv f d e a  v a  ++ G ++  s+  +t a+P      +r  k+  g++
  MMETSP1174-20130828|4634_1  77 AKIFVGGLAWETSMETVKDHFSKFG-PVVDVILP-RDRETGRSRGFGFVTFQE---AAVA-EKVLNIQHSLDGRELNLNSATPErIDsRAADGTEPVKRLYIGDLLSSTSEAEMRAAFESF--GDIEDIVIMKNpdtgesrgFGFVSFRDVESAnkVLAQGDVSGFQVGSSKAKITKAQPKGAP-TMRGGKGMMGGK 264
                 589********************86.69***995.55677899******9865...6776.57889999**************843414578999**************************..999987655422233333399********99335567789*****************8766.455555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.76
# Mc/sec: 647.79
//
Query:       MMETSP1174-20130828|4635_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-10   35.9  41.7      4e-06   22.7   4.2    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    2.3e-06   23.4  39.6    2.7e-06   23.2  25.8    1.8  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.9    4.7  41.4       0.93    5.7   9.9    3.3  3  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   4.2   2.9e-09     4e-06     798     942 ..      58     203 ..      45     211 .. 0.79
   2 !   19.8  19.1   2.1e-08   2.8e-05     681     868 ..     208     395 ..     199     404 .. 0.49

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.9e-09
   TIGR02168 798 eelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae 942
                 ++++ l++a ++leae + e +   a+ + +++  +++++ +ek++++l    ++l+ e+++ +++i+ l++e ++l+ +++ + k+   le +l++l+ +l+++++++++l+++v++l+++++++ + +++l ++++ lev +  
  MMETSP1174-20130828|4635_1  58 NSVAILKAACAKLEAEKSaEIQMLKADFALKVKAFKEDVHTKEKKMKRLGTDVKTLNGEVQAKAKRIQCLNTEVKKLRGNIDIKMKRNLGLESELKTLKGDLRTKAKKIHNLSTDVDKLTADCNAKAKVISDLGAAKQALEVGLLD 203
                 55555555666666665555555555555788899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988887655 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2.1e-08
   TIGR02168 681 ieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieelee 868
                   + e+++ ++ee+i+ ++++l+e+e++l+++e+ +++ ++el+++e++l+  + +l+ +ek+ ++++++++ ++++l+   e   + ++ +  ++e+l++ e+ +++  ++i++ + el+a ++  ++  + ++e + +++  ee l+   k+++++ ++le + ++++ l ++ +sl+ +++++ e
  MMETSP1174-20130828|4635_1 208 TYDREAKLHAAEETIRGKDAKLQEAEEALKAAEKTTRDTDSELQTTEKSLRTYRHKLQVAEKTLQAHAKTIRAKDDKLQATVEGFLAHAKTIRIKDEKLQAGEASLVAHAKTIREKEGELAAGERIAQAYMKTIREKDVKLRASEELLHTQAKTLREKDDKLEAALSKLRALDAQNKSLRGKLTSIAE 395
                 34444555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544444443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  25.8   1.9e-09   2.7e-06     671     973 ..      97     395 ..      88     402 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.9e-09
   TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleael..seekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeeleaLep 973
                 + +++k++rl  +++ L+ e ++ +++++ ++ ++++l+ +++   k+   +e+el++l+ + +++++++++l +++++l  + ++k + + +l a  ++le  l +  +   d ea+l  +ee i+ ++++l++ ee ++  e+ ++++++el+  e   ++l+  +++lq   + l+++ k i+++ ++l+a +e + ++++ ++ + ++L++  + L +  + ++++  el   ++ ++a +++ r++  +l+a  e l+ + ++l e+   + +  ++  +l+ + ++ + +  +l ++ +
  MMETSP1174-20130828|4635_1  97 HTKEKKMKRLGTDVKTLNGEVQAKAKRIQCLNTEVKKLRGNIDIKMKRNLGLESELKTLKGDLRTKAKKIHNLSTDVDKLTADCNAKAKVISDLGAAKQALEVGLLDQANTTYDREAKLhaAEETIRGKDAKLQEAEEALKAAEKTTRDTDSELQTTE---KSLRTYRHKLQVAEKTLQAHAKTIRAKDDKLQATVEGFLAHAKTIRIKDEKLQAGEASLVAHAKTIREKEGELAAGERIAQAYMKTIREKDVKLRASEELLHTQAKTLREK---DDKLEAALSKLRALDAQNKSLRGKLTSIAE 395
                 567788999999**********999******************99999999**************************************************999988888888877765226899999************************999888...8899999999999999999999*********************99999999999999999999999999999999999999999999999999999999999999999974...333334667777777777777777666655 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.7     0.003       4.2      31     165 ..      75     213 ..      51     223 .. 0.60
   2 ?    5.7   9.9   0.00068      0.93      72     163 ..     216     308 ..     205     336 .. 0.36
   3 ?    1.9   5.8    0.0099        14      70     134 ..     319     383 ..     297     405 .. 0.43

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.003
   TIGR03319  31 eeeakkiieeakkeaeakkkealleakeevkkl...reelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltq.eeAkel.lleeveeelkeea 165
                 ++e + +  +   + +a k++ +  + +++k+l    + l+ e++++ k +q l++ +k+ + ++d k+++    e+el++ + +l++k+k++++ ++++++l+++ +++ + is+l + ++A e+ ll++ ++ +++ea
  MMETSP1174-20130828|4635_1  75 SAEIQMLKADFALKVKAFKED-VHTKEKKMKRLgtdVKTLNGEVQAKAKRIQCLNTEVKKLRGNIDIKMKRNLGLESELKTLKGDLRTKAKKIHNLSTDVDKLTADCNAKAKVISDLGAaKQALEVgLLDQANTTYDREA 213
                 222222222222222222222.2222223333300134566788888888888888888888888888888888899999999999999999999999999999999999999999975155655535666555555544 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00068
   TIGR03319  72 kerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellke...qkeeLekisgltqeeAkellleeveeelke 163
                 ++ +++++ ++ +l++ ee+l+  +++ +++++el+++ek+l++ +++l+  e++l+ + k+   ++++L+   +   ++Ak++ +++  e+l+ 
  MMETSP1174-20130828|4635_1 216 HAAEETIRGKDAKLQEAEEALKAAEKTTRDTDSELQTTEKSLRTYRHKLQVAEKTLQAHAKTiraKDDKLQATVEGFLAHAKTIRIKD--EKLQA 308
                 3334444444444444444444444444444444444444444444444333333332222200022222222222222233322222..22222 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.0099
   TIGR03319  70 elkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeq 134
                  ++e++ el++ e+  +   +++ +k+ kl+  ee l+++ k+l+ek  +le+  ++l+ l +++
  MMETSP1174-20130828|4635_1 319 TIREKEGELAAGERIAQAYMKTIREKDVKLRASEELLHTQAKTLREKDDKLEAALSKLRALDAQN 383
                 23333334443333333333444444444444444444444444444444443333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.21s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 1190.54
//
Query:       MMETSP1174-20130828|4639_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|4643_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1174-20130828|4647_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1167.60
//
Query:       MMETSP1174-20130828|4652_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 205.75
//
Query:       MMETSP1174-20130828|4651_1  [L=1344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       358  (0.0872745); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.16s 00:00:00.94 Elapsed: 00:00:00.60
# Mc/sec: 2956.56
//
Query:       MMETSP1174-20130828|4666_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1426.33
//
Query:       MMETSP1174-20130828|4668_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.7   0.1      0.038   11.0   0.0    1.4  1  TIGR02282 MltB: lytic murein transglycosylase B
      0.035   10.8   2.9      0.042   10.5   2.0    1.1  1  TIGR00674 dapA: dihydrodipicolinate synthase


Domain annotation for each model (and alignments):
>> TIGR02282  MltB: lytic murein transglycosylase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.9e-05     0.038     166     194 ..      90     118 ..      84     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.9e-05
   TIGR02282 166 AvdfdedGkidllnsadDaigsvanylke 194
                 A+d+d+ G i ++ sa Da+gsv+ +++ 
  MMETSP1174-20130828|4668_1  90 ALDGDGPGVIGIVSSAFDALGSVGSWFVD 118
                 99************************975 PP

>> TIGR00674  dapA: dihydrodipicolinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.0   2.1e-05     0.042      14      89 ..       3      79 ..       1      88 [. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.1e-05
   TIGR00674 14 gsvdfaalekliesqiekgvdaivvvGtTGEsatLsleEkkkvievavelvknrvpv.iaGtgsnateeaieltkea 89
                ++vd  +++   e+ ++k v a+v  G+   s+t +++  +kv   ++++ ++ ++v i G ++++t++++e ++ +
  MMETSP1174-20130828|4668_1  3 KQVDEVKVDMTKETDETKAVRAVVRKGSIKGSTTTTTNKSIKVPFSTTTTINKSIKVpIKGSTTTTTDKSMERATNT 79
                67999999999999999**************************8888888888899989************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|4681_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|4683_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 736.36
//
Query:       MMETSP1174-20130828|4686_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|4690_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.6   0.0     0.0036   14.0   0.0    1.2  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.8e-07    0.0036     281     346 ..     158     226 ..     145     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.8e-07
   TIGR02360 281 lflaGdaahivpptGakGlnlaa.sdvaylyeal.leaykekdsaglerysakalarv.wkaerfswwl 346
                 l la d +h+   t   G+n aa sd + l +++ le+y++  +  + +  + + + + wka  fs+++
  MMETSP1174-20130828|4690_1 158 LALAFDESHVTSQTTCEGMNKAAiSDAMALVDSVtLERYNQIGQPFVTAADNVCSSGItWKATSFSFST 226
                 78999***************87559**99987762799***999999999999988766*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1142.53
//
Query:       MMETSP1174-20130828|4689_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1037.58
//
Query:       MMETSP1174-20130828|4691_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|4696_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|4704_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.9   0.0       0.24    9.3   0.0    2.0  2  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   5.8e-05      0.24       7      28 ..      12      33 ..       7      40 .. 0.85
   2 !    5.9   0.0   0.00063       2.6       8      27 ..      53      72 ..      48      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.8e-05
   TIGR01489  7 DFDgTIieqdsddwivdkfgkk 28
                 FD TI  +d  +wi ++ +++
  MMETSP1174-20130828|4704_1 12 SFDSTIKVWDPSTWICQQTLQG 33
                5***************998765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00063
   TIGR01489  8 FDgTIieqdsddwivdkfgk 27
                +D TI  +d  +wi ++ ++
  MMETSP1174-20130828|4704_1 53 YDSTIKVWDPSTWICQQTLE 72
                8**************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|4705_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|4706_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|4708_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 919.52
//
Query:       MMETSP1174-20130828|4711_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|4712_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|4713_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|4714_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|4715_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.7   0.2     0.0014   15.3   0.1    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.5e-07    0.0014     162     265 ..      53     173 ..      32     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-07
   TIGR00115 162 kv........dGeafeggka..edfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedy.....haeel.agkeaefkvtvke..vkekelpelddefakelgefetleelkakirkqle 265
                 ++         G++f++  +  + f+++lg+g++i+g +++lvG  +G ++ + +  pe       +  ++  g + +f+v+v +   +++e+p+l de+  + + f ++ee+  +++kq +
  MMETSP1174-20130828|4715_1  53 TIdassktgeAGKQFDSSRTrgKTFDFQLGAGKVIQGWDKGLVGICKGAKAILVIP-PEMGygergAGGDIpGGATLNFDVEVVDfsMEAPEEPNLFDELDLNKDGFLSEEEMLIFFKKQGK 173
                 444444445578888876543499*************************9977776.33322333343333256788999999865577888888888874444447777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 839.93
//
Query:       MMETSP1174-20130828|4717_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|4720_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 734.19
//
Query:       MMETSP1174-20130828|4721_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   12.7   0.3      0.012   12.4   0.2    1.1  1  TIGR00634 recN: DNA repair protein RecN


Domain annotation for each model (and alignments):
>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2     3e-06     0.012     264     372 ..      61     172 ..      38     182 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3e-06
   TIGR00634 264 idaslkelaekveealteveeatrelreyldeleadperlneieerlaeikrLkrKygasv...eevleyaekikeeldqLedseesleaLeeevekleeelakaaeelski 372
                 +d+sl  l++k  ++l+   + t +l++  ++le+ + r+  i + l+ i+ +++  ++ +      l+  ++++++ld L +++++le+ e+++++  ++++ + +++++ 
  MMETSP1174-20130828|4721_1  61 FDNSLGLLTKKFLNLLQSSPDGTLDLNKAASNLEVQKRRIYDITNVLEGINLIEKQSKNIIvwkGSGLQVSNELQQKLDSLREANKNLEMEESQLNRCLRQMEDNLHAITQR 172
                 788888899999999999999999***********************99998888777665332467***********************************9999888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|4724_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-17   60.2   0.0    5.4e-17   59.8   0.0    1.1  1  TIGR01718 Uridine-psphlse: uridine phosphorylase
    3.1e-08   31.0   0.0    4.1e-08   30.7   0.0    1.2  1  TIGR01719 euk_UDPppase: uridine phosphorylase
    4.8e-07   27.3   0.0      1e-06   26.3   0.0    1.5  1  TIGR00107 deoD: purine nucleoside phosphorylase
  ------ inclusion threshold ------
      0.025   12.0   0.1      0.052   10.9   0.0    1.5  1  TIGR03468 HpnG: hopanoid-associated phosphorylase


Domain annotation for each model (and alignments):
>> TIGR01718  Uridine-psphlse: uridine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   5.2e-20   5.4e-17      39     217 ..      30     224 ..      14     237 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 5.2e-20
   TIGR01718  39 rnrefvtyvgelkgkpvsvtstGiGgpstaiaveel..lqlGadtfirvGttGalqphikvGdvvi.ataavrl.........dGaskeyaPlefPavadfevtaalvk.aaesvgvr.hhvGvvaskdsfyvgqer.dtysgrvvaelkgklealral..nvlayemesatlltl..asvrgvraGavlavianrtr 217
                 + r f+t++g+l g+p+s++s G+G p     v e+  +  G    +r Gt G+l+ +   G vv+ + +av +         +G ++ y    +Pa +d     a+ +  +  +g+   ++G+ as dsfy+ q r dt       +++g l +lr+    v ++eme+  ll l  ++   ++a a   v+anr +
  MMETSP1174-20130828|4724_1  30 SSRGFTTFTGTLGGVPMSIISIGMGFPMMDFFVREVraIVEGPMCVVRFGTCGGLKEDAPEGSVVVvSEGAVAVlrdpdafqeEGNTQYYRISKYPAPSDPGLSGAVAReLSSALGAEvVKLGMNASGDSFYSSQGRfDTQ---FDDNAHGILSELRSRypAVASMEMETFHLLDLarCCKTSIKATAASIVVANRST 224
                 689*******************************984466799*******************9887344554322223333448*****************999998751566788863589***************6554...5788888888888753368899*******988335677899**********987 PP

>> TIGR01719  euk_UDPppase: uridine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     4e-11   4.1e-08      79     260 ..      45     229 ..       2     237 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4e-11
   TIGR01719  79 pvllvshGmGipsisilLhelikllyyakvkdvvliRiGtsGGi..GvppGtvvvssealdaelkdeyellvlGkrvv.ratqldealveell.lvakeakdel...evvsgrtlcaddfyegqsRlDGalCeytekdkkafLrkleelgvrniemessvfa..altskaglkaavvCvtllnRleGDqit 260
                 p+ ++s GmG p +   ++e+  ++         ++R Gt+GG+    p G vvv se+  a l+d       G+  + r ++  +     l  +va+e  + l    v  g   ++d fy  q+R D  + ++      + Lr      v  +eme+  +   a ++k+++ka+   + + nR  G  + 
  MMETSP1174-20130828|4724_1  45 PMSIISIGMGFPMMDFFVREVRAIVEGP----MCVVRFGTCGGLkeDAPEGSVVVVSEGAVAVLRDPDAFQEEGNTQYyRISKYPAPSDPGLSgAVARELSSALgaeVVKLGMNASGDSFYSSQGRFDTQFDDNAHGILSE-LRSR-YPAVASMEMETFHLLdlARCCKTSIKATAASIVVANRSTGGVVD 229
                 6678999*****9999999987766543....4579********444799***************998888899866514444433332222213344433433110445688999*************997766554433.4443.35799*****98875226689999***99999999999987765 PP

>> TIGR00107  deoD: purine nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     1e-09     1e-06      36     206 ..      28     209 ..      24     220 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1e-09
   TIGR00107  36 vnevrgmlgftGkykgkkisvmGhGmGipsisiyskelikeyev.kkiirvGsCGairkkvklkdviialkastdskvnrvrfvev.........dlaaiadfelv.klakeaakkkgld.vkvGnvfsadlfystdkevldllekygvlavemeaaalyavaaelgkkaltlltvsdhlvth 206
                  +  rg  +ftG+  g  +s++  GmG p +  +++e+    e    ++r G+CG ++++     v++ ++ +     + ++f+e           + a +d+ l+   a e + ++g + vk G   s d fys +   +d   + ++ ++  e  + y   a ++ +++ ll ++    t 
  MMETSP1174-20130828|4724_1  28 HTSSRGFTTFTGTLGGVPMSIISIGMGFPMMDFFVREVRAIVEGpMCVVRFGTCGGLKEDAPEGSVVVVSEGAVAVLRDPDAFQEEgntqyyrisKYPAPSDPGLSgAVARELSSALGAEvVKLGMNASGDSFYSSQ-GRFDTQFDDNAHGILSELRSRYPAVASMEMETFHLLDLARCCKTS 209
                 56789*********************************99887625699***********98888887766666555566666555333333332333445666762346777777776525788888899999887.678888888888888888888877777777777776666555555 PP

>> TIGR03468  HpnG: hopanoid-associated phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     5e-05     0.052      45      71 ..      71      97 ..      61     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
   TIGR03468 45 gvaglvSfGvAGaLdpaLkpGdlvvpe 71
                g   +v fG++G+L+++   G++vv +
  MMETSP1174-20130828|4724_1 71 GPMCVVRFGTCGGLKEDAPEGSVVVVS 97
                556799*****************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1043.54
//
Query:       MMETSP1174-20130828|4728_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|4730_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|4729_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   11.5   2.3      0.013   11.0   1.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.055    9.0   5.6      0.022   10.3   2.3    1.4  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.6   6.2e-06     0.013     682     790 ..     268     375 ..     247     393 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.2e-06
   TIGR02169 682 erleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels 790
                    ++L rel++l +e++++ + l e+++++      +   e +l  + +  ++ +e +e  ee+ls+++ ++ee++  l +++a+++e  e+ + l+++l + e++ s
  MMETSP1174-20130828|4729_1 268 TTAGALRRELNDLGAERTELSRSLAEVEERVTVLAVTTALWETRLASAIA-DNQPREAAEVAEERLSAVSGQKEEAELLLVDIQADVKECVEEYEYLEAQLSEYEDRRS 375
                 45667777777777777777777777777777777777777777643333.3444555666677777777777777777777777777777777777777777777654 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.13   2.8e+02     411     498 ..      31     117 ..      26     123 .. 0.73
   2 ?   10.3   2.3   1.1e-05     0.022     802     897 ..     272     373 ..     243     390 .. 0.43

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.13
   TIGR02168 411 qleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesles 498
                 ++  rr+r++  +ee +++ + + + ++ ++ ++ e+  e +e++ ++++++e+  e ++e++  + +++++ +e a+ q r ++l++
  MMETSP1174-20130828|4729_1  31 RVYVRRNRQRPAREEFDDEWSFFPKLVDPTDDDFVEHTDERAEVDPTDDDFVEHTDE-RAEFNPTNDDFDEYTDERAEGQFRRNILNA 117
                 555667777777777777777777788888888888888888888888888877776.678888888888888888888888777765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1.1e-05
   TIGR02168 802 alrealseleaeltelkeeaaekeerleslekeiaalekeleel......eeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelree 897
                 alr++l++l ae tel++++ae+eer++ l  ++a +e++l  +      +e++e +ee++++++ + ee+e  l +++++++e  +e++ le++l+e +++
  MMETSP1174-20130828|4729_1 272 ALRRELNDLGAERTELSRSLAEVEERVTVLAVTTALWETRLASAiadnqpREAAEVAEERLSAVSGQKEEAELLLVDIQADVKECVEEYEYLEAQLSEYEDR 373
                 233333333333333333333333333333333333333332111111112223333333333333333333333333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 1487.55
//
Query:       MMETSP1174-20130828|4735_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 961.05
//
Query:       MMETSP1174-20130828|4736_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|4737_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|4740_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|4738_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-66  221.3   0.0    3.6e-66  220.9   0.0    1.1  1  TIGR00191 thrB: homoserine kinase
    7.5e-12   43.0   0.0    7.1e-06   23.4   0.0    2.5  2  TIGR01920 Shik_kin_archae: shikimate kinase
    1.6e-07   29.0   0.0    7.2e-06   23.5   0.0    2.2  2  TIGR00549 mevalon_kin: mevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   2.6e-69   3.6e-66       1     282 [.      87     368 ..      87     388 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.9 bits;  conditional E-value: 2.6e-69
   TIGR00191   1 lkvkvPassANlgpGfDvlGlalslvlellvtedvaqeskdksleaegegvekipkesdkNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaaviaanelaglkls...keelldlalllEgHpDNvapallGGlqlavkedd....llevlkvPsgsklkvvlviPnievsTaeaRavLPkaysrqdlvfnlshlavlvtAlvskdkadllaiamkDrvhqpyRe.kliPelteikqaakekgalgitlSGaGptilalaeeek.eekaqelleklak 282
                 ++v+vPa++ANlgpGfD++G+al    e++v+      +++ +l++egeg+++ip++ + Nl+   +kk ++  g +v+p+k +  + ip +rGLGSS+aaiv++++a+  + g +l+    eel ++a+++EgHpDNvapa+ GG+q+ ++        +e +++P  + l++v+ iP+   +T +aR vLP +ysr+++vfn  ++a lv+ l ++ + d l++ ++D++hqp R  +++ +l+ + +aa+++ga    lSGaGp++lal++  + ++ aq+ +e++ +
  MMETSP1174-20130828|4738_1  87 VTVRVPATTANLGPGFDTIGMALDMWSEVTVQL-----AEKFELTNEGEGASEIPTD-ESNLVVVGLKKAFEYAGVAVPPLKYRCINRIPFARGLGSSSAAIVGGILAGLVMSGHQLKmwgAEELFNIASEIEGHPDNVAPAIYGGIQIGIHGGPgdrwRSERVNLP--TGLQAVIFIPKTTGKTSDARCVLPDKYSREECVFNIGRMAWLVNSLATN-NLDNLRYGVQDKLHQPQRGaHVYTHLDPMIEAAENAGASCCYLSGAGPSVLALTTGASgDIFAQREKERVDR 368
                 689****************************99.....333358*************.9*************************************************9998888876333699****************************999999999999***..79***********************************************.9*****************725778999999************************988765555555555444 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.2e-09   7.1e-06      19     116 ..     107     207 ..     102     284 .. 0.80
   2 !   17.1   0.0   4.2e-07   0.00058     221     254 ..     325     358 ..     316     371 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.2e-09
   TIGR01920  19 fgidLkveakvrlsdgeakvslkvreeeeldp...elierilealieklgik.egleveveseiPagsGLksSsAlvnAlvlavlkakgeeiddieilrlga 116
                 +++d++ e++v+l++ + +   + ++ +e+++   +l+   l+++ e+ g+    l+++    iP + GL sSsA+++  +la l + g++++ + +  l  
  MMETSP1174-20130828|4738_1 107 MALDMWSEVTVQLAE-KFELTNEGEGASEIPTdesNLVVVGLKKAFEYAGVAvPPLKYRCINRIPFARGLGSSSAAIVGGILAGLVMSGHQLKMWGAEELFN 207
                 89************8.4444444444444544111666666788888888751589*******************************999998887766554 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.2e-07
   TIGR01920 221 paekalekGAavaglsGkGPsyvalteepeeeva 254
                 ++e a+++GA ++ lsG GPs++alt+    ++ 
  MMETSP1174-20130828|4738_1 325 MIEAAENAGASCCYLSGAGPSVLALTTGASGDIF 358
                 5788999******************998765554 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.3e-09   7.2e-06      19     130 ..     104     213 ..     100     217 .. 0.76
   2 !    3.0   0.0    0.0091        12     246     268 ..     321     343 ..     317     347 .. 0.94

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.3e-09
   TIGR00549  19 AiaaaiealttvtvieeskeislieselgrkslakvsqelskllesyiaavlskleekkeaalkveieseipigaGLGSSAavavaliaalaalfgsels...keelaklaneaE 130
                  i++a++    vtv+  +++++l+++  g++++   ++e + l+   + +++++++   ++ lk++    ip  +GLGSS a +v+ i+a + ++g++l+   +eel+++a+e+E
  MMETSP1174-20130828|4738_1 104 TIGMALDMWSEVTVQL-AEKFELTNEGEGASEIP--TDESN-LVVVGLKKAFEYAGVAVPP-LKYRCINRIPFARGLGSSSAAIVGGILAGLVMSGHQLKmwgAEELFNIASEIE 213
                 6777888888888877.66655555544444444..44444.3436788899999999998.**********************************7665333799999999998 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0091
   TIGR00549 246 kleqlvelarkagalgaKlTGaG 268
                 +l+ ++e+a++aga  + l+GaG
  MMETSP1174-20130828|4738_1 321 HLDPMIEAAENAGASCCYLSGAG 343
                 799*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1375.99
//
Query:       MMETSP1174-20130828|4746_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1731.86
//
Query:       MMETSP1174-20130828|4747_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-84  278.1   0.0    9.8e-84  277.7   0.0    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
     0.0083   13.6   0.0      0.013   13.0   0.0    1.2  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.7   0.0   4.8e-87   9.8e-84      11     191 ..      83     263 ..      75     264 .. 0.97

  Alignments for each domain:
  == domain 1    score: 277.7 bits;  conditional E-value: 4.8e-87
   TIGR00493  11 tsrgerafdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                  ++g+   d+ srllk+ri+ll++ev devan++vaqll+l  +dpe +i++yinspGGs++aGlaiydtmqf+  d++t+c+G+aasmGafll aG+kGkr +lpn+rimihqplGGaqGqa+d+eiqa+eil+ k++ln ++a+ tGq+l+k+++dt+rdff++  ea +yG+id+v++
  MMETSP1174-20130828|4747_1  83 VGEGKDQMDVISRLLKNRILLLGDEVTDEVANVLVAQLLYLSNNDPETEITMYINSPGGSVSAGLAIYDTMQFVPCDIRTVCFGMAASMGAFLLGAGTKGKRSSLPNARIMIHQPLGGAQGQAADVEIQAQEILYTKALLNGMMADYTGQELDKLAEDTDRDFFMTPLEALDYGIIDEVIK 263
                 56788899***************************************************************************************************************************************************************************96 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.4e-06     0.013      29      83 ..     126     179 ..     104     185 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.4e-06
   TIGR00706  29 dksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyiala 83 
                 ++    + + i+SPGG+v+a   iy++++ +   +  v  +g  a  G+++++++
  MMETSP1174-20130828|4747_1 126 NDPETEITMYINSPGGSVSAGLAIYDTMQFVPCDIRTV-CFGMAASMGAFLLGAG 179
                 5555668899******************9998444433.3344444477776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|4751_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-251  832.1   0.9   4.2e-251  831.9   0.6    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
     1e-120  401.8   0.4   1.3e-120  401.5   0.3    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    3.3e-86  287.7   0.4    4.2e-86  287.3   0.3    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    6.5e-83  277.1   0.6      8e-83  276.7   0.4    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    6.9e-82  273.6   0.7    8.6e-82  273.3   0.5    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    9.4e-79  262.9   0.4    1.2e-78  262.6   0.3    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    4.2e-71  237.9   0.2    5.1e-71  237.6   0.1    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.3e-70  236.1   0.1    1.6e-70  235.9   0.0    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    2.5e-58  195.8   1.8      3e-58  195.5   1.2    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    3.3e-21   73.2   1.3    7.4e-12   42.3   0.0    2.1  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  831.9   0.6    1e-253  4.2e-251       2     531 .]       5     533 ..       4     533 .. 0.99

  Alignments for each domain:
  == domain 1    score: 831.9 bits;  conditional E-value: 1e-253
   TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki.kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGksklk 531
                  +l+n++ae++ +++al vn  aa+glq+vlktnlGP+Gtlkmlv+gaG+ik+tkdGnvll+e+qiqhPta+liar a+aqdditGdGtts+v+l+gell+qaer+ +eglhPr++teG+e+ak+++l+fle++k    +   drel++ vartslrtkl++elad lt++vvda+++i k+++ idl+mvei++mkh++ +d k++rGlvldhGarhPdm+++++n++++t+nvs+eyek+ev s+f+ys+aeer+kl+e+erkf+d++v   ielk++v+++   +gf ++nqkGidplsld+lakegila+rrakrrn+er+tlacGG+++ns  dl+p++lG+aG vye+++g++k+tf+e++k+ ks+t+likgpn ht++q+kda rdGlravknai+d +vv+G gafe a++ +l+  k +vkGkak+gv+afa++ll+ Pkvl+ensG+dvq+++++le+e+ +++  vg+dl tg+ + +e +g+wdny+vk+q ++ +t++a+qlllvdev+raGk++ k
  MMETSP1174-20130828|4751_1   5 TQLVNPDAEIVSSAQALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKtYPNVLEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKPDQPIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVCQNG--EGFFLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRAGKKMGK 533
                 6899**********************************************************************************************************************************9834556679*******************************************************************************************************************************************99..69**********************************************************************************************************************************************************************************************************************************************9976 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.5   0.3  3.1e-123  1.3e-120       5     520 ..       8     527 ..       5     528 .. 0.94

  Alignments for each domain:
  == domain 1    score: 401.5 bits;  conditional E-value: 3.1e-123
   TIGR02339   5 lkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaeki..dvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanv........vicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaa 520
                 ++++++ ++  +al  n aaa+ ++ ++k+ lGPrG  kmLv + G++ it DG  +l+em+i+hP+a l+   a +qd+ +gDGtt+av+l GeLl++ae +  +++hP vi eG+++a++++l+ +++  ++    +ed+el++ va tsl +k    e +d+l++ vv+a + + + +  +   +dl+ ++i + k +s +d+++v+G+v+D  + h++mPk+++n  ++  ++++e ek+e+   +  ++ ++ +k ++ e +   e+v + ++   +v        ++ qkgiD l    lak+Gilavrr+k+ ++e+++ a+G+  v+s  +++++ LG a++v e+++g+dk +f+e++k+ak+ t+l++G + h +d+l  a +D l++vk++++d+ vv+GgGa+e++   +lr + ++++G+ ++ v+afad+l   p++laen+G+d  d++++l ++h k + + +g+d  tg++    ++gv++  +vk+q i+ +t  at +l +D+v++a
  MMETSP1174-20130828|4751_1   8 VNPDAEIVSSAQALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYpnVLEDRELMTCVARTSLRTKLH-TELADLLTDAVVDALQCISKPD--Q--PIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVcqngegffLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIK-SGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRA 527
                 567778888999**********************************************************************************************************************9887522579******************.5899***********6555554..4..699999************************************************************************999999888765554433322222222468**********************************************************************************************************************************************************************************7.6899*********************************************998 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3   0.3     1e-88   4.2e-86      10     525 ..      13     530 ..       6     531 .. 0.92

  Alignments for each domain:
  == domain 1    score: 287.3 bits;  conditional E-value: 1e-88
   TIGR02344  10 kresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleel..sipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdl........vitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsGvkk 525
                 +  s  +a l n  aa+ +  +++t lGp+  lkml+   G i +t dGn++l e++++hp+a  +   + +qd+  GdGtts ++l+Gell +ae +  + +hp vi ++++ a +++l++le +  + p  +ed++ ++ + ++s+ tk+ ++ +dl++d  +da +++++ + +    ++ +   + +      + +ds+ ++G++l+    hp m + + n  ++  ++++ey k+e  +    ++ e+ ++l++ e+++ ++  +  i++k ++        ++ +kG+  l+   l+k++i a+rr ++ + +ri+ ++G t vn   +l  + +G  aG ++ + +Gd+ ftfl++ck  k+ct+l++G+    +++++   +d+l+ ++n + ++ +vpGGGa e a+ v+l+  + +++g +++ ++a ad+l + p++l++n+G +v  t+ +l   h ++  +a+G+d  tG+++  +  g+w+++ vk q i  +   a+ ll +d+++   kk
  MMETSP1174-20130828|4751_1  13 EIVSSAQALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFkkTYPNVLEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKPD-QPI--DLHMVEIMTM---KHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVcqngegffLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGW-AGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKS-GAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRAGKK 530
                 55567788999*****************************************************************************************************************66115566678899999999***************************9998.333..3444443444...3444479******************************************************************999999999887333333335899*********************************************9766665.67777799*********************************************************************************************************************99.599********************************************9976665 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.7   0.4     2e-85     8e-83      16     531 ..      23     529 ..      11     534 .. 0.93

  Alignments for each domain:
  == domain 1    score: 276.7 bits;  conditional E-value: 2e-85
   TIGR02340  16 qnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelg.kealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanv........vlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkp 531
                  n  a+  ++ ++kt lGP G  kmlv  +G++ it dG  +l++++++hP+a ++   a+ qd   GdGtts v+l  ell++a+ + ++ +hP ++ +G+ +a  +++ +++   ++  + l  +e +  va+tsl +k+ +  +dl+++ vvda++++ + ++       ++ v+i+  + +s ++s +v+G +l+  +    mpk++++  ++  +++++  k +++ + + +++e+ +k+ + e + + e++   ++   +v        ++  kGid l+l +l   g++avrr k++++ ri+ a G+t v s  d      l++ +lG a  v+ee ++dd+  ++++ k++ks++++++G+n++++d+++ +  d l +vk +++ + vv+GgGa e+a  + l  +  t++ + ++ +++fa++lli Pkvla n++ d ++ + +l   h ++           +Gldl +g ++     Gv +    k + ++ +t  a  +l +d++++  +
  MMETSP1174-20130828|4751_1  23 VNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYPNVLEdRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKPDQP----IDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVcqngegffLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMD------LSPDVLGWAGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSG--------AAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRAGK 529
                 6899999**********************************************************************************************************999999999997245556799***************************988854....4467899999999************************************************************************998887655552222222246789***********************************98877554......67889**************************************************************************************************************************998776654........568*******************************************998655 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.3   0.5   2.1e-84   8.6e-82      25     530 ..      17     526 ..       9     528 .. 0.92

  Alignments for each domain:
  == domain 1    score: 273.3 bits;  conditional E-value: 2.1e-84
   TIGR02343  25 GleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemi.......ddikksGan.lvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                   +a   n aaa+ + s+l+t lGp+G  k+l++  g+i +t dG  +l++m+++++ a l+ + + +qd+  GdGtt+ v+l + ll qae++  +G+hp  i+eGfe+a +++++ le   +      +++e +   a+tsl +k+ ++  + l++ +vda+   + +  + +d++++++     +s  d+k+++G+++d    hp m+k++ ++ +      fe  k     ++  s++ee +kl + e++  +e +        ++ + G    ++ q G d  + ++l ++++ avr    +++e i++a gG  v    +ls + lG a+ v+e+s+G  +d++ ++e++k +k+ t+l++G n   i++ k + +d l +v+n i ds +v GGGa e a  +++ +  d ++g  +  ++afa++l   p +laensG+d  +t+ ++ ++ +k+  +a+G+d  +          v + +  k+q i+l+t l + +l +d+v+ 
  MMETSP1174-20130828|4751_1  17 SAQALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYPNVLEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQ-CISKPDQPIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVmafielkRQVCQNGEGfFLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLG--DDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSG-AAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMR 526
                 5689999***********************************************************************************************************************9999****************9988888888887777754.455666789999999999999999*************************9998888889************************99998766544222222256666666525778**************************************************************9..589999***********************************************************************************************************99976.689***8765555556788***************************986 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.6   0.3   2.9e-81   1.2e-78      18     520 ..      19     527 ..       8     530 .. 0.93

  Alignments for each domain:
  == domain 1    score: 262.6 bits;  conditional E-value: 2.9e-81
   TIGR02345  18 gqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddl..dkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiilekl.......ekivesGanv.vlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                 + l+ n  a++ ++ +lkt lGPrG  k++v+      ++ dG  +l++++i hP+a l+   a +qd+  GdGtts v+l+gell++a  +  eglhp++i+++++ a+  ++++l+  + +  ++  e re++  +a+t+l++kl +e ++ ++  vvda++ ++k d+  d +++ +  +k  + +ds +v+G+ +++    a +   Pk ++n  +++ nv +e++  +  +    +++e+ ++++++e k   ek+       +++ + G    ++ ++ i  l+   +a+  i++  r +  +++r++ a+G++ + +  dl+ dvlG  +   e+ +G +++ ++++++ ak+ctl+++G+  + +++ + + +d +  v+ a+ ++ +v+GGGa e      lr    +++gk+++ ++a+a++l + P+ laen Gfd  +++ +l ++h k  ++  G+d+ t +++   ++ vw+   vk+  ++ +t  a+ +l vde ++a
  MMETSP1174-20130828|4751_1  19 QALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGqIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYPNV-LEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKPDQpiDLHMVEIMTMKHQSGTDSKFVRGLVLDHG---ARHPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVmafielkRQVCQNGEGFfLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIK-SGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRA 527
                 45889*********************999998776588*************************************************************************************9955.566********************************99987664227889**********************986...8999********************88888888888999999999999988877775222333356777777651557899**************************************************98888889**********************************************************************************************************************.999*********************************************9876 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.1   1.3e-73   5.1e-71      13     514 ..      23     525 ..      16     528 .. 0.92

  Alignments for each domain:
  == domain 1    score: 237.6 bits;  conditional E-value: 1.3e-73
   TIGR02342  13 snivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipv..dlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqks...ilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  n  aa+ +  +++t lGp+G  k++  + G++ it dG+ +l+++++ hp+a l+   + aqd  +GdGtts v+l+G ll  ae++ + g+hp +i+e+f++a d++l+ l++++++    l+dre +  +a+tsl +k+ ++ ++ll+   vda+  ++++  d+ +dl+++ ++    +   d+++++G+vl++ a +    p+ + +  +   +  +   k+++ ++ + s+ ++  +++  erk+  + v +  + +  v         + +  ++ l+l +lak +il v+  +r ++e i+ + G + v s   l++d lG a  v e +++d k   +  +k a+k+ ++l++G n   id+ + +  d l  ++  + + ++++GGGa e    + l+   +++kG  +  v+afad+l + p  laen+G++  +++ +l ++h +     G+++  g +     e v   + v++  + l++     +l +d+++
  MMETSP1174-20130828|4751_1  23 VNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYpnVLEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKP--DQPIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARH-PDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVCQNGEGfflVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLGDDKFTFLEDCK-AAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVM 525
                 5788999************************************************************************************************************9886622588************************************998..67777887777776667777***********99986.7889999****************************************976665554444444443333211134567899************************************************************99999886.67999***************************************************************************************************************************************************997 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9   0.0   3.8e-73   1.6e-70      16     526 ..      17     539 ..       4     543 .] 0.91

  Alignments for each domain:
  == domain 1    score: 235.9 bits;  conditional E-value: 3.8e-73
   TIGR02346  16 leeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaegsvkrvkdakvavfsc..pldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkv........ivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqii.....makpaGGPk 526
                   +a+l n++a   l+ +++t lGP+g  k+++    ++ +t+D   +l+e+++qhP+a l+   + aq+  +GDgt  ++ l gelL++ae++   Gl+p  i +G+e+a +++l+ Le +  +  + le++e ++ + ++sl +k  ++ +d+l++ v +a+ ++  k ++  ++  + ++ +   s +ds++++Glvl++ a      ++ ++  v++c  +++ +++e     L  naee      +e k  ++++ ++ +   +v        +v +  +  l l  + k +il ++   + ++ r++ ++g t++      sp+ lG   +v+ e +g++k t +++ +  +k  t++++G  + ++d++  a  DG+ +vk+++ ds ++pG+ga e      l+ + +++kg  +  ++ fa +  i P++laen+G+++++ + +L  +h k    +g+d+ ++++     + e ++D++  k+  i+l+t  a+ +L vD ++     m k a GP 
  MMETSP1174-20130828|4751_1  17 SAQALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTYPNVLEDRELMTCVARTSLRTKLHTElADLLTDAVVDALQCIS-KPDQPIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARHPDMPKSLTNCFVMTCnvSFEYEKSEVASSFLYSNAEERQKLIESERKFTDEKVMAFIELKRQVcqngegffLVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTQVNSEMDLSPDVLGWAGAVYEESLGDDKFTFLEDCKA-AKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSGAAVGLDLITGDVM--LPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMragkkMGKSAAGPN 539
                 5679999******************************************************************************************************************9988877788888888899*******999989*********998775.446789999999999999999*************998877666777777777722568899************************999999988877666533333333577789************************************9999999***********************999887.8999****************************************************************************************************9*******9999884..556789****************************965666778888886 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   1.2   7.3e-61     3e-58      15     515 ..      20     528 ..       6     531 .. 0.86

  Alignments for each domain:
  == domain 1    score: 195.5 bits;  conditional E-value: 7.3e-61
   TIGR02341  15 arlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkg...stnleaiqiikklggklddsyldegfllekkig.vnqpkrienakiliantaldtdkvkvfgsrvrvdst..aklaeleka.ekekmkekve...kilkhninvf.inrqliynypeqlfadagvmaiehadfegverlalvtgge.ivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaa 515
                 a l     a  +  ++k+ lgp+g  k+l+ ++   +i++t dg  +l+++ ++ p+a ++   +  qdd  gdgtts ++l+ ellr+ae++ ++ +hp++i eg+ +a + +l+ l++   +   +  + re +  +art+l +k+ ++  d +++  vda+  +       +l+ ++i+ +   + +ds +  g++l++       pk + n  ++  n +++ +k  v  s +  ++    kl e e+    ek+ + +e   ++ + +   f +n++ i     +++a+ g+ a+  a    +er++l  gg  + s +d      lg    + e  +g+dk+  +  +k+ ++ct++++g    ++d+ + +  d l  + + + +s +v ggg+ e     ++    + v+gk  + v+afa +l   p +la+n+gfd  + + +l  +h +   ++gldl  g++   ++ g+ + y++kr+ +  ++  a +ll vd++++a 
  MMETSP1174-20130828|4751_1  20 ALLVNCAAANGLQSVLKTNLGPRGTLKMLVGGAG--QIKITKDGNVLLHEMQIQHPTAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFK-KTYPNVLEDRELMTCVARTSLRTKLHTELADLLTDAVVDALQCISKpdqPIDLHMVEIMTMKHQSGTDSKFVRGLVLDHGARhPDMPKSLTNCFVMTCNVSFEYEKSEVASSFLYSNAEerQKLIESERKfTDEKVMAFIElkrQVCQNGEGFFlVNQKGIDPLSLDMLAKEGILAVRRAKRRNMERITLACGGTqVNSEMDLSPD-VLGWAGAVYEESLGDDKFTFLEDCKAAKSCTLLIKGPNTHTIDQLKDAARDGLRAVKNAIDDSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLLVDEVMRAG 528
                 5555566666777899*************98876..9******************************************************************************9987543.334444566888889************************9887754111457888888888888899**********987651589***********************999876655411455555543133555554442112333333334379999999*****************************99626677775444.489999999999**************************************************************9999999999*******************************************************************************999999999999******96 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.8e-14   7.4e-12      19     163 ..      29     175 ..      14     218 .. 0.83
   2 !   29.9   0.1   1.1e-10   4.4e-08     388     519 ..     388     525 ..     374     531 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.8e-14
   TIGR02348  19 dkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklske...v.kdkeeiaqvatis..anndeeiGeliaea 163
                 + l   +k+ lGP+g   +l    G+ kitkdG  + +e++++++     a l+ + a+  +d++GdGtt a++l+  ++++  +  a G  p  +  G e a ++ ++ l++  k    v +d+e ++ va  s  +   +e+ +l+++a
  MMETSP1174-20130828|4751_1  29 NGLQSVLKTNLGPRGTLKMLVGGAGQIKITKDGNVLLHEMQIQHP----TAMLIARNATAQDDITGDGTTSAVLLCGELLRQAERVYAEGLHPRVITEGFEMAKDHTLDFLESFKKTypnVlEDRELMTCVARTSlrTKLHTELADLLTDA 175
                 56778899*******************************999887....5899**************************************************999988776654431124155555666776651133456666666666 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.1e-10
   TIGR02348 388 kekkarvedalnatraavee.GivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiaglll.tteav 519
                  + k+   d l+a + a+++ G+v+GGG+    a  +l ++k + +   k+Gv+    +l    + +aen+G d +  + +++e+   +++ vG +  t++     + G+ d  +v r+ ++ ++ +a+ ll   e++
  MMETSP1174-20130828|4751_1 388 DQLKDAARDGLRAVKNAIDDsGVVPGGGAFETAAYVSLRAFKDTVKgKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEhikSGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTMLATQLLlVDEVM 525
                 55677889**********755*******************887777699***********9999********99765554444432226789*********9999999*****************9998655055555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.53
# Mc/sec: 1352.27
//
Query:       MMETSP1174-20130828|4753_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|4755_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|4764_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 796.82
//
Query:       MMETSP1174-20130828|4767_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|4768_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|4766_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-15   55.0   0.9    5.9e-07   26.8   0.0    4.4  5  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
    1.8e-13   48.1   1.5    9.9e-05   19.4   0.1    3.4  3  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.9e-10   5.9e-07      40     128 ..      29     123 ..      22     133 .. 0.83
   2 !   10.6   0.0   2.3e-05     0.048      57     131 ..     107     175 ..     103     198 .. 0.84
   3 !   11.2   0.0   1.5e-05     0.031      53     128 ..     206     276 ..     201     278 .. 0.76
   4 !   13.4   0.0   3.3e-06    0.0067      42     128 ..     246     331 ..     243     340 .. 0.70
   5 !    4.0   0.0    0.0023       4.8      40      76 ..     299     334 ..     292     379 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.9e-10
   TIGR03547  40 ekgWkkiaefpgaareqavaavvdgklyvFgGvgkee.s.......esslqvlddvykydpkknsWekletrsPvgllGasaveleegkililGGvn 128
                 +  W+++a+ p  +r++ +a+ v +k+yv gG   ++ s       +  + v d++ +y p+++sWe le   P+    +sa+ + +++i+++GG +
  MMETSP1174-20130828|4766_1  29 DITWTEVADLPE-QRSDMTATTVSDKIYVIGGCKDHQvScdwwdgcSYCPSVADTTLVYAPSSDSWETLEDDMPRERYRHSAT-VVGSSIYLIGGRD 123
                 568*******96.688999999**********9988632222222235689*****************************999.999********76 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.3e-05
   TIGR03547  57 avaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWeklet..rsPvgllGasaveleegkililGGvnkei 131
                   a+vv+  +y+ gG + +      +++++v + d++  +W+ l++  +sP++ +G+ a+   ++ i+++GG++ ++
  MMETSP1174-20130828|4766_1 107 HSATVVGSSIYLIGGRDVD-----DNLISEVDVLDTEAGTWSTLSSecTSPRSDMGTFAY---NDLIYVVGGYDFNY 175
                 568999********98877.....568899999**********9763379***99*9999...99********9765 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 1.5e-05
   TIGR03547  53 areqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgllGasaveleegkililGGvn 128
                 ar + + + +d+ +yvFgG   +      + l+++ +ydp+ ++W+ l+  +     G +a+ + +gk++ +GG  
  MMETSP1174-20130828|4766_1 206 ARGDIALVEADDLFYVFGGWSSD---DWCNPLSSTEVYDPAADTWTTLAELQE--GRGDKACGTLDGKLYAIGGEH 276
                 56677778888999999999877...566667888899999999999986543..368888888888888888864 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 3.3e-06
   TIGR03547  42 gWkkiaefpgaareqavaavvdgklyvFgGvgkeesesslqvlddvykydp..kknsWekletrsPvg.llGasaveleegkililGGvn 128
                  W+++ae   + r + ++  +dgkly+ gG  +++ +s  + ++dv +ydp  +++ W   e + P + +  asa+   +++i+++GG  
  MMETSP1174-20130828|4766_1 246 TWTTLAELQEG-RGDKACGTLDGKLYAIGGEHNNDCTSGSNPVTDVEVYDPdsSDDGWVV-EGSIPEAkFRFASAT--YDDTIYVFGGQR 331
                 69999998776.556667889*************96666666666666665116788975.555555505555554..778899999965 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.0023
   TIGR03547  40 ekgWkkiaefpgaareqavaavvdgklyvFgGvgkee 76 
                 + gW    + p a+    ++a  d+ +yvFgG   e+
  MMETSP1174-20130828|4766_1 299 DDGWVVEGSIPEAKFR-FASATYDDTIYVFGGQRMES 334
                 4555555555444333.34556788888888876654 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   7.2e-05      0.15     150     202 ..      31      97 ..      26     107 .. 0.64
   2 !   19.1   0.0   6.1e-08   0.00013     117     241 ..     107     234 ..      98     255 .. 0.88
   3 !   19.4   0.1   4.8e-08   9.9e-05      76     203 ..     220     355 ..     213     370 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.2e-05
   TIGR03548 150 eleelpdfPgeaRvqpvavalknelYvfg...............ggdaeaytdgyayslkknkWekva 202
                  ++e++d+P e R    a + ++++Yv+g                  +++ +  + y +++++We+++
  MMETSP1174-20130828|4766_1  31 TWTEVADLP-EQRSDMTATTVSDKIYVIGgckdhqvscdwwdgcSYCPSVADTTLVYAPSSDSWETLE 97 
                 466777777.4566666777777777777666666666666643334556666666666666666665 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 6.1e-08
   TIGR03548 117 gvatyldgklyvalgn.angkpsnklyllnletkeleelpdfPgeaRvqpvavalknelYvfg..ggdaeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvnkkvfedAv 241
                  +at+++ ++y+ +g+ ++++  +++ +l+ e   ++ l+    ++R    + a+++ +Yv+g  + + +ay  +   ++ +++W+  ++v++ +   s  G  ++  ++++  v+GG   + + + +
  MMETSP1174-20130828|4766_1 107 HSATVVGSSIYLIGGRdVDDNLISEVDVLDTEAGTWSTLSSECTSPRSDMGTFAYNDLIYVVGgyDFNYTAYSSVDILDPDTGSWTFSDDVTTISGLASARGDIALVEADDLFYVFGGWSSDDWCNPL 234
                 689********987752677779999*************************************444567899999***************999999999*******************9998887655 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 4.8e-08
   TIGR03548  76 vyvgGsneeeslsdvlrlsldekkealivetlpslplaldngvatyldgklyvalgnangkp...snklyllnle.......tkeleelpdfPgeaRvqpvavalknelYvfgggdaeaytdgy..ayslkknkWekvaa 203
                 ++ gG  +++  + +++  + +   a +  tl++l  +  + +   ldgkly  +g++n+     sn   + ++e       + ++     +P  a+    + ++ + +Yvfgg+  e+  dgy  ++ +++++W   ++
  MMETSP1174-20130828|4766_1 220 YVFGGWSSDDWCNPLSSTEVYDPA-ADTWTTLAELQEGRGDKACGTLDGKLYAIGGEHNNDCtsgSNP--VTDVEvydpdssDDGWVVEGSIPE-AKFRFASATYDDTIYVFGGQRMESDCDGYdyCFPVSNHSWAFTDD 355
                 444444444445555555554444.44678999999999999999***********999876545443..334444466655889999999995.66777889999*****************72256678899987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.45
# Mc/sec: 1322.82
//
Query:       MMETSP1174-20130828|4771_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1346.29
//
Query:       MMETSP1174-20130828|4773_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1174-20130828|4775_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|4776_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|4777_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1174-20130828|4779_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1018.20
//
Query:       MMETSP1174-20130828|4781_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:01.01
# Mc/sec: 203.86
//
Query:       MMETSP1174-20130828|4783_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1089.97
//
Query:       MMETSP1174-20130828|4789_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-14   50.8   0.0    4.8e-14   50.4   0.0    1.1  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.2e-17   4.8e-14      54     176 ..      12     141 ..       7     147 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.2e-17
   TIGR03137  54 ladkyeelkelgvevysvstdthfvhkawhdeseai..gkikypllgdptkkltrnfdvlieeaglaerg......tfvidpeGvikvvevtaegigrdaeellrkvkaaqyvaahdGevcpakwkegeet 176
                 +++  ee+ + gve+ +  +dt + h+ w +e++++  +ki++p++ d++ +++r+++  ++++   +r+      + vidpe +i++++    +ig +  e+lr + + q  + h+    pa+w  ge+ 
  MMETSP1174-20130828|4789_1  12 VSKLKEEFDARGVEIIALGVDTNMNHRDWIKETKELteEKITFPIIVDDSAQISRALGLCRPNEPNIRRSliplmlAVVIDPELKIQLLQYYPVSIGHNFYEILRAIDSMQLSRVHKI-ATPANWMVGEDV 141
                 5556689999*******************99988773369***********************9999987444444679*********************************999985.68****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 839.07
//
Query:       MMETSP1174-20130828|4792_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 222.73
//
Query:       MMETSP1174-20130828|4793_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|4799_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 322.30
//
Query:       MMETSP1174-20130828|4791_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 2027.22
//
Query:       MMETSP1174-20130828|4801_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|4797_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-74  248.3   0.1    3.3e-74  248.1   0.0    1.0  1  TIGR00111 pelota: putative translation factor pelota
      1e-12   45.4   0.3    1.3e-09   35.1   0.1    2.3  2  TIGR03676 aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms


Domain annotation for each model (and alignments):
>> TIGR00111  pelota: putative translation factor pelota
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.1   0.0   1.6e-77   3.3e-74       8     351 .]      10     370 ..       1     370 [. 0.92

  Alignments for each domain:
  == domain 1    score: 248.1 bits;  conditional E-value: 1.6e-77
   TIGR00111   8 lkkgeavikLlPedldDLwtlyqiiekgDvvlavtkrrvqdkdkirsdk.skktvkLgikvekveFdekterlrvkGvivaGaeddvPlGsyhtleiklvkelsiikknwkkfqlkrlreaveaskkskvvvvvleegvaevglvrqysveekqkikssipkkk.rtkkrdekrkefykeiakkleef...ddlktiivagPGFakkdlldflkerypelakkavlen........vstggraGinevlkrgvverilaekrlakeievidelLeelakdddkvvYGedevkkaleygaievLLvaDkv.....lvereeieklldsveesGGkvvilsteheaGkqLesLgGiaglLrfki 351
                  k+g + i   Pe+ +DLw+  ++i +gD+v  +t r+v  +   +s   +k ++ L i+vekv+Fd ++  l++ Gv  +    +v lG yhtl+++l ++ +++k++w+   lkrl ea++ +  ++v+++v+e g  +++l+  + ++ + +i+++ipkk+    ++++ + +f++ + +   ++    ++  ++v +PGF k+d++ ++++++    +k +l++        +++g ++ + ++l  + + + l e+++  ++  ++++L+ la d+d++ YG + v  a e  a+e+LLv+D +      +er  +  l++ v  +GGkv i s +h++G+qL++++Gia++Lrf+i
  MMETSP1174-20130828|4797_1  10 AKNGAGLIVFRPEEGEDLWHAFHLIAEGDLVRTTTLRKVIREGSTGSTTsTKIKISLTIEVEKVDFDAEACVLHIAGVNRREN-AHVRLGAYHTLHLELHRDCTLEKDRWDAVALKRLDEACNPEMGADVAAIVMELGLGHLCLISGHMTITRARIEVHIPKKRaGASNHGKATTRFFEGMYQAVLRHidlSKIRCVLVGSPGFVKDDFMAYMFSQATKHGEKELLKSkskfvvchTASGHKRAVADMLADPSISNQLIETKVVGDVVALNKFLKMLATDQDRAYYGYNHVYRANEQLAVETLLVTDTLfqsrsTAERLRYVALVEAVTANGGKVHIFSNLHSSGEQLKQVSGIAAILRFPI 370
                 35667899**********************************999999967889***********************998866.8899****************************************************************************767999*********996555544011466678*********************999999999999999988999**********************************************************************66666666778888999999*******************************98 PP

>> TIGR03676  aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   6.6e-13   1.3e-09     199     321 ..     191     324 ..     141     330 .. 0.78
   2 !    8.4   0.0   8.9e-05      0.18     364     402 ..     332     369 ..     326     370 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 6.6e-13
   TIGR03676 199 eaflplke.kklkGiligGpgptKeeflegdylh...helkkkil...elvdvsyt...desGlrelveka..edalkelelvkekkllekflkelvkdsglaaYGeeevrkaLelgavdtllisedlekervtl 321
                 +a l+  + +k++ +l+g pg+ K++f+   + +   h   k +l   + + v+ t    +  + +++     +++l e+++v +  +l+kflk l++d++ a YG ++v +a e+ av+tll+++ l ++r t+
  MMETSP1174-20130828|4797_1 191 QAVLRHIDlSKIRCVLVGSPGFVKDDFMAYMFSQatkHGE-KELLkskSKFVVCHTasgHKRAVADMLADPsiSNQLIETKVVGDVVALNKFLKMLATDQDRAYYGYNHVYRANEQLAVETLLVTDTLFQSRSTA 324
                 44444445589****************9965543111322.3333232345454441114555666665432368999**************************************************9999876 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 8.9e-05
   TIGR03676 364 lvelaeesgakveiistdteegeqllkaFgGiaaiLryk 402
                 lve +   g kv+i s+  + geql++   GiaaiLr+ 
  MMETSP1174-20130828|4797_1 332 LVEAVTANGGKVHIFSNLHSSGEQLKQV-SGIAAILRFP 369
                 778888999****************998.9*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1332.46
//
Query:       MMETSP1174-20130828|4805_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|4808_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1235.42
//
Query:       MMETSP1174-20130828|4804_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1973.40
//
Query:       MMETSP1174-20130828|4810_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-37  126.3   0.1      2e-37  126.1   0.1    1.0  1  TIGR02689 ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type
    8.7e-22   75.6   0.1      1e-21   75.3   0.1    1.1  1  TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin)


Domain annotation for each model (and alignments):
>> TIGR02689  ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.1   9.5e-41     2e-37       2     125 ..      18     151 ..      17     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 9.5e-41
   TIGR02689   2 kvmfvckrnscrsqmaegfakil.gag.kiavtsagle.asrvdptaievmeevgidisgqiskplenfnaedydvvislcgcgvnlpe....awvtreifedwqledp...dgqsvevfrrvrdeikervenl 125
                 +vmf+c++nscrsqma+ + ++l g++ ++ v+sag+   + v+  ai vm+evg+disg  s+ + +f+a d+d  is cgcg +l +    aw  r ifedw+l+dp   d   + ++rrvrdeik +v++l
  MMETSP1174-20130828|4810_1  18 NVMFLCNHNSCRSQMADAWLRTLrGEDsTVGVASAGIVgGTAVKAGAITVMAEVGVDISGYSSDAVADFSATDFDCAISCCGCGSKLDPadkvAWKQRAIFEDWNLDDPpamDPGDLSAYRRVRDEIKVKVQEL 151
                 69********************9544426899****8725789********************************************7633446**************944445679***************98 PP

>> TIGR02691  arsC_pI258_fam: arsenate reductase (thioredoxin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.1   5.1e-25     1e-21       1     129 []      19     151 ..      19     151 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 5.1e-25
   TIGR02691   1 iyflctGnscrsqmaegygkkllgdewe..vksagie.ahGlnpkavkamkevgidisdqtsdlidedilnkadlvvtlcgdardkcpvlppevkr....lhwelddpakaegteeeklavfrkvrdeikervkkl 129
                 + flc  nscrsqma+++ ++l g++    v+sagi     + + a+ +m+evg+dis   sd + +   ++ d  ++ cg  +   p+     k+    + w+lddp   +      l+ +r+vrdeik +v++l
  MMETSP1174-20130828|4810_1  19 VMFLCNHNSCRSQMADAWLRTLRGEDSTvgVASAGIVgGTAVKAGAITVMAEVGVDISGYSSDAVADFSATDFDCAISCCGCGSKLDPADKVAWKQraifEDWNLDDPPAMD---PGDLSAYRRVRDEIKVKVQEL 151
                 57********************9988652279999862578999********************99988999999999988776666655444333223368*****98776...5679**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 668.46
//
Query:       MMETSP1174-20130828|4816_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1174-20130828|4815_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 556.93
//
Query:       MMETSP1174-20130828|4814_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1899.70
//
Query:       MMETSP1174-20130828|4822_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|4820_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1068.29
//
Query:       MMETSP1174-20130828|4829_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|4830_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-13   46.1   0.9    1.1e-12   45.8   0.6    1.0  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.8e-12   45.2   0.1    2.1e-12   45.0   0.1    1.0  1  TIGR01929 menB: naphthoate synthase
    4.7e-11   39.5   0.2      6e-11   39.1   0.2    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    6.4e-11   39.1   0.2    7.8e-11   38.8   0.1    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    1.8e-10   37.4   0.1    1.9e-10   37.3   0.1    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    3.6e-08   30.9   0.1    4.2e-08   30.6   0.1    1.0  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    1.7e-06   25.3   0.4    1.9e-06   25.2   0.3    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    0.00087   16.3   0.0     0.0011   15.9   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.6   2.2e-15   1.1e-12     105     224 ..      30     152 ..      25     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2.2e-15
   TIGR02280 105 aGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrar.akglallgekldaetaaewGliwqvvdde..aladevqalaahlakqptrglalikralqaaetnsldtqldl 224
                  GaG +l  a+di l+a +a f    +++Gl  d G    lp+++G+    + + l+ge++ a+ a   Gl+ +vv     ++ +++ +la+++a+q   ++  +k  l+ +  +s+ + ld 
  MMETSP1174-20130828|4830_1  30 IGAGVDLVTAADIRLSASDAVFSVREVRVGLAADVGTLQRLPKVAGNDSlVRQVCLTGEDFGADMADRMGLVSRVVPGSraEVLEAAMELAQQIAQQSPVAVRGTKVNLNFSRDHSVADGLDY 152
                 69********************************************86526789**********************7654489999******************************9999996 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1     4e-15   2.1e-12     106     222 ..      27     146 ..      22     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 4e-15
   TIGR01929 106 GyaiGGGhvlhvvcdltiasenarfgqtgpkvGsf.dgGyGsaylarivGqk.kareifflcrqydaeeaekmGlvnavve..laeleketvewareilaksplalrllkaalnadldGqa 222
                  y+iG G  l    d+ +++ +a+f   + +vG   d G     l ++ G+    r++ +++ ++ a  a +mGlv  vv+   ae+ ++++e+a++i ++sp+a+r  k  ln   d  +
  MMETSP1174-20130828|4830_1  27 RYCIGAGVDLVTAADIRLSASDAVFSVREVRVGLAaDVG-TLQRLPKVAGNDsLVRQVCLTGEDFGADMADRMGLVSRVVPgsRAEVLEAAMELAQQIAQQSPVAVRGTKVNLNFSRDHSV 146
                 69*******************************541444.456799999976268*************************8334566689************************9998754 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.2   1.2e-13     6e-11     107     203 ..      29     126 ..      23     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.2e-13
   TIGR02440 107 clggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskal.dmiltgkqlrakqalklglvddvvp..ksilldvavelakkgklk 203
                 c+g g++l  a   r+ + d  +v+ + ev++gl    g  qrlp++ g  + + ++ ltg ++ a  a ++glv  vvp  ++ +l++a+ela++  ++
  MMETSP1174-20130828|4830_1  29 CIGAGVDLVTAADIRLSASD--AVFSVREVRVGLAADVGTLQRLPKVAGNDSLVrQVCLTGEDFGADMADRMGLVSRVVPgsRAEVLEAAMELAQQIAQQ 126
                 ****************9988..5899***********************866542789**********************4445699*****99876655 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1   1.5e-13   7.8e-11     112     203 ..      28     122 ..      21     145 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.5e-13
   TIGR02437 112 falGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiia.aGkevraedalkvglvdavvkaekle..aaalqllkd 203
                 +++G G+++v a+d+r+++++a   + e+++G+    G   rlp++ G ds +  ++ +G++ +a+ a ++glv  vv   + e  +aa++l ++
  MMETSP1174-20130828|4830_1  28 YCIGAGVDLVTAADIRLSASDAVFSVREVRVGLAADVGTLQRLPKVAGNDSLVRQVClTGEDFGADMADRMGLVSRVVPGSRAEvlEAAMELAQQ 122
                 899************************************************99866439*******************87664411455554443 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   3.6e-13   1.9e-10     118     198 ..      28     107 ..      23     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 3.6e-13
   TIGR02441 118 sclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaal.dleltGkkikadrakklGlvdrlvdp 198
                  c+G G++l  a + r+++ d  +++++ ev +Gl    G+ qrlpk+++ ++ + ++ ltG +  ad a ++Glv r+v  
  MMETSP1174-20130828|4830_1  28 YCIGAGVDLVTAADIRLSASD--AVFSVREVRVGLAADVGTLQRLPKVAGNDSLVrQVCLTGEDFGADMADRMGLVSRVVPG 107
                 6****************9988..699************************988653799*******************9954 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   8.2e-11   4.2e-08     103     230 ..      27     159 ..      22     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 8.2e-11
   TIGR03210 103 gyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekk.areiwylcrrysakealamglvnavvphdq...ldaevkkwcdeiveksptalaiakrsfnv..dtahqagiaglgmyalk 230
                  y+ig g  lvt +d+ +++  av+     +vg          l +v g+    r++      + a+ a  mglv  vvp  +   l+a     +++i ++sp a+  +k  +n+  d +   g+  ++ +++ 
  MMETSP1174-20130828|4830_1  27 RYCIGAGVDLVTAADIRLSASDAVFSVREVRVGLAADVGTLQRLPKVAGNDSlVRQVCLTGEDFGADMADRMGLVSRVVPGSRaevLEA-AMELAQQIAQQSPVAVRGTKVNLNFsrDHSVADGLDYMATWSMA 159
                 599******************************6544334467999*998653899************************865111444.4568999*********9999987771155556788888777664 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.3   3.7e-09   1.9e-06      99     209 ..      28     139 ..       9     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.7e-09
   TIGR03189  99 qclggglevaaagnllfaapdaklgqpeiklgvfapaascllpervgkvaaedlly.....sgrsidgaegariglvdavaedpeaaalayfdehlaklsasslrfavraarlgvv 209
                  c+g g+++++a ++ ++a da +   e+++g+ a        +r++kva +d l      +g    ++ + r+glv+ v+    a  l     +la++ a     avr ++++ +
  MMETSP1174-20130828|4830_1  28 YCIGAGVDLVTAADIRLSASDAVFSVREVRVGLAADVG---TLQRLPKVAGNDSLVrqvclTGEDFGADMADRMGLVSRVVPGSRAEVLE-AAMELAQQIAQQSPVAVRGTKVNLN 139
                 6*******************************966554...4589999999998761111156666667799********9877655554.4556777777777888888887765 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0011     135     213 ..      29     108 ..      15     117 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-06
   TIGR03200 135 rigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvs.gtlcepfsahkakrlgiivdvvpal 213
                  ig g ++  aad+ ++   a f     + g aa+ g+ + lp + g +  + + + + e f a  a r+g++ +vvp  
  MMETSP1174-20130828|4830_1  29 CIGAGVDLVTAADIRLSASDAVFSVREVRVGLAADVGTLQRLPKVAGNDSLVRQvCLTGEDFGADMADRMGLVSRVVPGS 108
                 599*****************************************999877665437889*******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 656.38
//
Query:       MMETSP1174-20130828|4834_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.0   0.3      0.042   10.5   0.2    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2     1e-05     0.042     276     354 ..     107     178 ..     104     226 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1e-05
   TIGR00115 276 lkealldkLveknefelPealveqeierlleelekqlqqqgidleeylkkseeelreelkeeAekrvklglileeiakk 354
                 +++++l +++ek   +lP+ +v + ++r+ e  ++q  q +++ e  ++  ++++ e+     e+rvk++ +++ +   
  MMETSP1174-20130828|4834_1 107 IENRVLRAIIEKSFCHLPNEMVASFMQRRHELQMHQ--QAKMRTERRRS--KSDITES---LLERRVKVQSAISHVRAT 178
                 6899***********************999995444..34444444332..3344443...677788877777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1355.64
//
Query:       MMETSP1174-20130828|4844_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1102.75
//
Query:       MMETSP1174-20130828|4845_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 1578.00
//
Query:       MMETSP1174-20130828|4843_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1004.06
//
Query:       MMETSP1174-20130828|4848_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1587.99
//
Query:       MMETSP1174-20130828|4853_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1227.90
//
Query:       MMETSP1174-20130828|4858_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    8.7   2.0       0.15    8.5   1.4    1.0  1  TIGR00551 nadB: L-aspartate oxidase
       0.26    8.3   9.0       0.28    8.2   6.2    1.0  1  TIGR03779 Bac_Flav_CT_M: Bacteroides conjugative transposon TraM protein
        2.3    5.2  24.6        2.7    4.9  17.1    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.4   0.00011      0.15     373     456 ..      20     103 ..      12     112 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00011
   TIGR00551 373 eclvfGasaara.isrkklaasdesssavedevrleteddraelqrkvselrsllweaagivrlaesLeealaklkelkeevdel 456
                 e+  + +s +++  +r+++ ++++ + +  +  + e   d+a++ +k++     ++e+a + ++ae+L++a  k+++ +e + ++
  MMETSP1174-20130828|4858_1  20 EADLYRWSDGENrFTRRAIEKENSRARSKAKTKFQEEVRDLAKFLKKRDPRVATIREEARVREEAERLRKAEEKKRKAEE-FRKQ 103
                 555666666665145566666566666666777777778********************************999888744.3333 PP

>> TIGR03779  Bac_Flav_CT_M: Bacteroides conjugative transposon TraM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.2   0.00021      0.28      88     173 ..      27     111 ..      14     113 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00021
   TIGR03779  88 sdkekeelsssdsafkeeeeeeaeeegveeeirssaaayrdinreLgsfyeekksdeekellkeveelesrleeeqekkeeleeql 173
                 sd e++    + + +++   ++a++ + +ee+r  a+  ++++  + ++ ee++ +ee e l++ ee ++++ee +++kee ++q 
  MMETSP1174-20130828|4858_1  27 SDGENRFTRRAIEKENSRARSKAKT-KFQEEVRDLAKFLKKRDPRVATIREEARVREEAERLRKAEEKKRKAEEFRKQKEEWKQQK 111
                 5555555555566666666666666.7779********************************************999999998875 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  17.1     0.002       2.7      73     151 ..      36     110 ..      27     113 .] 0.55

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.002
   TIGR02794  73 qerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaek 151
                 ++ +k+ +++ ++ak+k ++e +++++  k+r ++ +   ++e++ +e++e+ ++aee+k+k+++ +k+k+e ++   +
  MMETSP1174-20130828|4858_1  36 RAIEKENSRARSKAKTKFQEEVRDLAKFLKKRDPRVATI-REEARVREEAERLRKAEEKKRKAEEFRKQKEEWKQ---Q 110
                 444555556666666666666666777644444444433.46666666666666666666664444455555532...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1174-20130828|4861_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|4859_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-07   26.7   0.0      9e-07   26.5   0.0    1.1  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.2e-10     9e-07     122     191 ..      33     104 ..      13     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.2e-10
   TIGR00095 122 etvfdiiylDPPfevklleailelllenkilnekalivveeeee.eelptsp.etlellkqkkyGktklely 191
                   +fd+i + PP+e+ +++++l+ ll+  +++e++++v+e+++e   lp  + + l  l++++yG+t ++ y
  MMETSP1174-20130828|4859_1  33 GMTFDLITVTPPYEQVSYNDLLKWLLDSPLVAEDTIVVIEYPTElGTLPPAIdNRLVGLRNRRYGRTVIAVY 104
                 457*****************************************856655551567889*******988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|4860_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 896.62
//
Query:       MMETSP1174-20130828|4863_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|4870_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|4871_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 954.38
//
Query:       MMETSP1174-20130828|4872_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 853.80
//
Query:       MMETSP1174-20130828|4879_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    6.7   6.9        1.1    6.5   4.8    1.1  1  TIGR01310 L7: 60S ribosomal protein L7


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.8   0.00028       1.1       7      82 ..      22      97 ..      16      99 .] 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00028
   TIGR01310  7 krkaeqelkkeaakkkklkkkenkkkkkkkfkRaekfvk.eyekaerekirlkreakkkgklyveaekklvFviRik 82
                 ++++ +++++   k++ ++k++k+k ++ +kR e+ ++ e+   e+ + rl+    +++ +y e+ +k+   iR +
  MMETSP1174-20130828|4879_1 22 LNREHVAAQQTLSLKANFEQKRTKSKYHE-TKRSEELQHfEFDVLEQRRARLREFYDEEERMYAEELAKMGMTIRRQ 97
                44555556666667777777777777777.88888888769999************************999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|4881_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|4887_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 166.56
//
Query:       MMETSP1174-20130828|4893_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|4892_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 248.98
//
Query:       MMETSP1174-20130828|4896_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   10.4   0.2      0.042   10.2   0.1    1.1  1  TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR02387  rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1     1e-05     0.042     145     205 ..      14      74 ..       4      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1e-05
   TIGR02387 145 naeelkykqlltedqyleiedqiyaedseleleevvgigaealkellaeleleevaeklre 205
                 + +e   k +ltedq  e+e ++ +     +  e +++ a+  ++ll +l  e++   + +
  MMETSP1174-20130828|4896_1  14 EISENAMKAILTEDQQRELEAHVTSIPDGTDDSERARMSADFAQQLLRSLPYEQKQALVHK 74 
                 5677789*******************999*********************99987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 489.64
//
Query:       MMETSP1174-20130828|4901_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|4904_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 321.17
//
Query:       MMETSP1174-20130828|4908_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 416.81
//
Query:       MMETSP1174-20130828|4910_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 696.61
//
Query:       MMETSP1174-20130828|4907_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 821.27
//
Query:       MMETSP1174-20130828|4909_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 970.12
//
Query:       MMETSP1174-20130828|4912_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|4914_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1174-20130828|4915_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|4918_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   12.1   0.6      0.045   12.0   0.4    1.4  1  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   1.1e-05     0.045      28      43 ..      15      30 ..       4      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR03655 28 aveCktCgasgpvees 43
                 + C+ Cga+g+++e+
  MMETSP1174-20130828|4918_1 15 GMTCDGCGATGHSHED 30
                479**********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|4923_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|4929_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|4931_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1200.68
//
Query:       MMETSP1174-20130828|4932_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|4937_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|4939_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   15.4   0.8      0.013   13.5   0.1    2.0  2  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.3e-06     0.013      25      78 ..      42      95 ..      32     104 .. 0.86
   2 ?    0.2   0.1     0.046   1.9e+02      23      43 ..     107     128 ..      96     139 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-06
   TIGR00823 25 lkaakaGdfakakelleeaeeelae.ahkaqtkllakeaggeelevslllvhaqD 78
                l a+ +G   + + lle++++++++ ah+  t ll+   +g+e  v +ll+  qD
  MMETSP1174-20130828|4939_1 42 LMASSNGHTSAVEVLLERGGADVNQaAHHGGTPLLQASWNGHEEVVKVLLMQ-QD 95
                6788999999***********998637****************999999985.55 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.046
   TIGR00823  23 ealkaaka.Gdfakakelleea 43 
                  al+aa+a G  + a+ l+ ++
  MMETSP1174-20130828|4939_1 107 TALDAANAaGHKKVAEMLVRHG 128
                 4566665413333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1174-20130828|4941_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 740.84
//
Query:       MMETSP1174-20130828|4935_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-48  162.5  11.7    3.9e-48  161.9   8.1    1.3  1  TIGR00803 nst: UDP-galactose transporter
  ------ inclusion threshold ------
      0.031   11.2   1.8      0.063   10.2   1.2    1.4  1  TIGR01129 secD: protein-export membrane protein SecD


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   8.1   1.9e-51   3.9e-48       1     218 [.     342     568 ..     342     570 .. 0.96

  Alignments for each domain:
  == domain 1    score: 161.9 bits;  conditional E-value: 1.9e-51
   TIGR00803   1 klsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa.......ktlsegnlvvglsavlsallssglagvyfekilkdkdts.fyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvfla 218
                 kl VP  +++ qnnl++va + l  a++qv  q k+l+tal+++ +l ++l+ kqw  ++  +lg+  vql q          +  ++gn  vg +a+lsa+ +sg+ag y e +lk + ++ +++rnlql + g+l+  v +l+ d+s++ +kgff+gy++avw v+  +++ggl++++vv+y d ++k++++ l+ii+ +l+sv++fd+k++   + g+ +vf+a
  MMETSP1174-20130828|4935_1 342 KLLVPGILYTTQNNLQYVASSRLEPAVFQVMyQVKMLTTALISVTMLKKRLSIKQWGGVTTCMLGLVLVQLSQMGTapsavgtRRGIAGNEAVGYAAILSACTMSGFAGCYLERVLKGSMSTsLWIRNLQLATWGFLLSSVNVLVRDRSAVLEKGFFYGYNRAVWTVIGVQAIGGLLISMVVRYGDALMKGFATGLAIIVTTLISVVFFDFKVTPQYVCGASIVFIA 568
                 5679*********************************************************************9888888777777888***************************9886666***************9**************************************************************************************98 PP

>> TIGR01129  secD: protein-export membrane protein SecD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   3.1e-05     0.063     336     391 ..     495     549 ..     487     554 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.1e-05
   TIGR01129 336 saieaGferalstildanittllaalvLyvlgtGavkGFAltlaigviaslftalv 391
                 + +  G++ra++t++   +   l   + + +g   +kGFA+ lai  +++l+++++
  MMETSP1174-20130828|4935_1 495 KGFFYGYNRAVWTVIGVQAIGGLLISMVVRYGDALMKGFATGLAII-VTTLISVVF 549
                 56678**********9987765555556789**********99995.555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 1820.22
//
Query:       MMETSP1174-20130828|4949_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|4952_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 562.02
//
Query:       MMETSP1174-20130828|4956_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|4958_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 243.67
//
Query:       MMETSP1174-20130828|4951_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 363.86
//
Query:       MMETSP1174-20130828|4963_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|4965_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 717.69
//
Query:       MMETSP1174-20130828|4964_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 820.73
//
Query:       MMETSP1174-20130828|4968_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|4970_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 519.16
//
Query:       MMETSP1174-20130828|4966_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2253.24
//
Query:       MMETSP1174-20130828|4972_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 332.25
//
Query:       MMETSP1174-20130828|4971_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 318.33
//
Query:       MMETSP1174-20130828|4974_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|4977_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   13.5   0.1       0.18    7.6   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0   0.00019      0.79     131     152 ..       1      22 [.       1      34 [. 0.78
   2 !    7.6   0.0   4.4e-05      0.18     127     151 ..      32      56 ..      21      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00019
   TIGR00870 131 gitalilAihkqnyeivklLle 152
                 g t+l +A ++ n+ iv+ L  
  MMETSP1174-20130828|4977_1   1 GTTPLLIASQNGNLDIVRYLAR 22 
                 78****************9864 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 4.4e-05
   TIGR00870 127 eftkgitalilAihkqnyeivklLl 151
                 +   g t+l +A + +n+ +v+ L 
  MMETSP1174-20130828|4977_1  32 TTDTGSTPLLIASQMDNLDVVQFLA 56 
                 556799****************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1174-20130828|4978_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   14.2   0.1      0.015   13.1   0.0    1.6  2  TIGR01765 tspaseT_teng_N: transposase, putative, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01765  tspaseT_teng_N: transposase, putative, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.7e-06     0.015      20      39 ..      14      33 ..       4      40 .. 0.83
   2 ?   -3.1   0.0      0.42   1.7e+03      40      41 ..      62      63 ..      51      73 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.7e-06
   TIGR01765 20 irafssavnfvikrllegks 39
                +r++++a+n++i+ +le  +
  MMETSP1174-20130828|4978_1 14 FRQWEQAFNLTIRKQLEKNT 33
                89**************9654 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.42
   TIGR01765 40 kk 41
                +k
  MMETSP1174-20130828|4978_1 62 HK 63
                22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 408.34
//
Query:       MMETSP1174-20130828|4980_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 611.95
//
Query:       MMETSP1174-20130828|4982_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   13.8   0.2     0.0039   13.6   0.1    1.1  1  TIGR01048 lysA: diaminopimelate decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   9.6e-07    0.0039     175     241 ..       6      77 ..       2     103 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.6e-07
   TIGR01048 175 eaeeayelalkleslelvGihvHIGSqildlepfveaaekvvklle...elkeegieleeldlGGG..lgis 241
                 ++++  ++  +    +++  h H+GS+  d + +  a++++ ++ e   + ++++ +++ l lGGG   g+ 
  MMETSP1174-20130828|4982_1   6 QQQQQQQQQQQPTAATVTTRHHHLGSGNHDGSALSRAVDRLKDVEEllpSNQKKSRNIARLVLGGGggAGVG 77 
                 45555666666677788899**********999999998877665511155566888888888875114443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 582.57
//
Query:       MMETSP1174-20130828|4984_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-11   38.7   0.0    9.9e-11   38.7   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.4e-14   9.9e-11      42      88 ..       8      54 .]       1      54 [] 0.88

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 2.4e-14
   TIGR01982 42 earkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslL 88
                 ++++++g  lr+ + +lGP+++K+GQ++s R+D+lp+++ e L+ L
  MMETSP1174-20130828|4984_1  8 PEEQRTRGDLLRDEIAALGPAAVKVGQTMSQRPDILPKDVCESLKAL 54
                4456789999**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|4989_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 956.12
//
Query:       MMETSP1174-20130828|4986_1  [L=916]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 2686.71
//
Query:       MMETSP1174-20130828|4991_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   17.1   0.0      0.061    9.1   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   6.7e-05      0.27     122     151 ..      24      53 ..       2      62 .. 0.80
   2 !    9.1   0.0   1.5e-05     0.061     123     150 ..      60      87 ..      53      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 6.7e-05
   TIGR00870 122 destseftkgitalilAihkqnyeivklLl 151
                 d + ++   g t+l +A++k n+ +v+ L 
  MMETSP1174-20130828|4991_1  24 DVNQGRKDTGSTPLYMAAQKGNLDVVRYLA 53 
                 5556677889*****************985 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 1.5e-05
   TIGR00870 123 estseftkgitalilAihkqnyeivklL 150
                  + ++   g t+l++A+h  n+ +v+ L
  MMETSP1174-20130828|4991_1  60 VNQGRTDTGSTPLHVAVHYGNLDVVRYL 87 
                 55667789*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 335.63
//
Query:       MMETSP1174-20130828|4996_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 783.42
//
Query:       MMETSP1174-20130828|5007_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1199.90
//
Query:       MMETSP1174-20130828|5014_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1024.86
//
Query:       MMETSP1174-20130828|5016_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1124.18
//
Query:       MMETSP1174-20130828|5012_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-45  154.9   0.1      3e-43  146.9   0.0    2.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    8.7e-26   88.1   0.1    1.8e-25   87.1   0.1    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      2e-12   45.0   0.0    6.8e-12   43.3   0.0    1.8  2  TIGR01068 thioredoxin: thioredoxin
    0.00051   16.6   0.0    0.00077   16.0   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0022   15.6   0.0       0.27    8.8   0.0    2.3  2  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
     0.0031   15.0   0.1     0.0064   14.0   0.1    1.5  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
  ------ inclusion threshold ------
       0.11   10.9   2.1       0.15   10.4   0.0    2.3  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   5.2e-46     3e-43       2     331 ..      41     416 ..      40     431 .. 0.82

  Alignments for each domain:
  == domain 1    score: 146.9 bits;  conditional E-value: 5.2e-46
   TIGR01130   2 evleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge.sssdYnG.pReaegivkylkkqsgPa..skeletvedlekllek....kevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkd...evvlvkkkkee...............................ekeekveeeletdvealekfvkkeslplvgeftketaakifeskplkvlllnveeskkkseellekflevakkfkgkkvkfavadeeefgkeleelglkaekapavvilslee.s......kkyaleqe.efssealkefvkdfldgklk 331
                  v +l++++fd ++ ++  + v+F+APWC HCk+++Pe+++AA+  ++++ +++ akvDat+++e+++ ygv+GyP++++f++ e ++   +G + + e+i ++ kk  + +   +el++ ++++ ++++    ++v v+g+f+  d e+++ f e+aek r  +++ a ++++ a k+le ++d    vv++k+ +e+                                +e+     + + +++++++v+++ +plv+ ft+  ++  f+  ++ ++++ v+ ++ +++ l + ++evak  +g+ +++ + ++e+ +++ e++g+++ + pavv++++ + +       +y  ++  e +s+al+++ ++f+dg l+
  MMETSP1174-20130828|5012_1  41 RVRTLSAKTFDAAVDAEGDLFVMFFAPWCEHCKKMKPEFQRAANMAEEAGLDLVFAKVDATKHEEVSKLYGVQGYPSMRFFKEREkQPISGDGvGETGEEIYEWAKKTHEAPdrISELASGKAIKGFVDDvndgASVGVIGFFE--DREASDLFVEAAEKFRYPVRF-AWTTKSYARKHLELEDDainVVVMYKPFDEQkmirsmngtkehskktqtdmadmmqkmmgvpMNEALKLIPEPQASKDFTAWVTTNMMPLVTPFTAGFTNLLFTGPVKIHVIVIVDIED-DNALLEDMLTEVAKIRRGEVLHVLMPNTEATDEIREYFGVEDYQLPAVVLSDMRDtTdedprgTQYIWPDGkELTSDALQAYENNFFDGALT 416
                 6889******************************************************************************88745555555446789******998764412457777788887776552125688999999..7899***********998884.4444445555555555411045566777777999***************99999999888863333333445556789*******************99999*9999999999999999.778899999*****************************************9987632233333589988888999**************986 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.1     3e-28   1.8e-25       1     103 [.      45     147 ..      45     149 .. 0.94

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 3e-28
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeG.eReaeelvefvee 103
                 l+a++fd +v  ++ d++v f+aPWC hCkk+ Pe++++a+  +++  +++ akvdat+++e+++ ++v+g+P ++ffk+ +k+p++ +G + + ee++e+ ++
  MMETSP1174-20130828|5012_1  45 LSAKTFDAAVD-AEGDLFVMFFAPWCEHCKKMKPEFQRAANMAEEAGLDLVFAKVDATKHEEVSKLYGVQGYPSMRFFKEREKQPISGDGvGETGEEIYEWAKK 147
                 56899***999.8999*************************************************************************966778999999887 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.2e-14   6.8e-12       3      80 ..      47     126 ..      45     144 .. 0.84
   2 ?   -2.4   0.0         2   1.1e+03      35      74 ..     332     374 ..     328     381 .. 0.70

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.2e-14
   TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvlee...lakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngke 80 
                 +++f+ +v ++     v f+A+WC  Ck + P ++    +a+e   ++ ++K++  +++e+++ yg++  P + +fk+ ++
  MMETSP1174-20130828|5012_1  47 AKTFDAAVDAE-GDLFVMFFAPWCEHCKKMKPEFQRaanMAEEAGLDLVFAKVDATKHEEVSKLYGVQGYPSMRFFKEREK 126
                 67788888775.589999****************8611155677779*****************************98765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
   TIGR01068  35 vleelakeleekvkvvKl.nvdeeqeiaakygir..siPtlll 74 
                 +l e+ak ++++v +v + n+++++ei + +g++   +P ++l
  MMETSP1174-20130828|5012_1 332 MLTEVAKIRRGEVLHVLMpNTEATDEIREYFGVEdyQLPAVVL 374
                 6677777777776555444899999999999886334677665 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06   0.00077     374     444 ..      59     129 ..      32     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-06
   TIGR00424 374 awlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrssrai 444
                   +v+++apwc+ c+ m+  ++  a+     g  +   + d  ++e   +   ++ +p++ +f  r  ++i
  MMETSP1174-20130828|5012_1  59 DLFVMFFAPWCEHCKKMKPEFQRAANMAEEAGLDLVFAKVDATKHEEVSKLYGVQGYPSMRFFKEREKQPI 129
                 457899*****************99999999999999999**99999999999**********99999998 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00046      0.27      25      94 ..      60     130 ..      37     159 .. 0.73
   2 !    4.5   0.0    0.0093       5.4      39      86 ..     328     377 ..     305     403 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00046
   TIGR02187  25 vFtdeskekCeyCeetkqlleelsevs..dklkleiydldteedkekvekykvervPtvileeegskdieir 94 
                 +F+      Ce C+++k   +  ++++    l+l   ++d+ ++ e+ + y+v+ +P++ + +e  ++  i 
  MMETSP1174-20130828|5012_1  60 LFVMFFAPWCEHCKKMKPEFQRAANMAeeAGLDLVFAKVDATKHEEVSKLYGVQGYPSMRFFKER-EKQPIS 130
                 44444456799999999888888777744567777788888889999999********9998755.555555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0093
   TIGR02187  39 etkqlleelsevsdklkleiydldteedkekvekykve..rvPtvileee 86 
                  ++ +l+e++++     l++   +te   e+ e ++ve  + P+v+l++ 
  MMETSP1174-20130828|5012_1 328 LLEDMLTEVAKIRRGEVLHVLMPNTEATDEIREYFGVEdyQLPAVVLSDM 377
                 4577888888888888899999999999**********4446****9853 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.1e-05    0.0064      35      90 ..      41     100 ..      16     126 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR02738  35 taaqdekpv.grkvlledyklvlfyqstCpyChqfapvLkq...lsqqtglevlayslDg 90 
                 ++++  +++   +v +e   +v+f+   C +C++  p +++   +++++gl+ +   +D 
  MMETSP1174-20130828|5012_1  41 RVRTLSAKTfDAAVDAEGDLFVMFFAPWCEHCKKMKPEFQRaanMAEEAGLDLVFAKVDA 100
                 455555555456677777889******************972224455666666666665 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.15       4      52 ..      63     116 ..      61     124 .. 0.64
   2 ?   -2.7   0.1       3.2   1.9e+03      35      53 ..     252     268 ..     249     270 .. 0.67
   3 ?   -3.9   0.1         7   4.1e+03      30      44 ..     320     334 ..     320     338 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00026
   TIGR02196   4 vYttpwCppCkkakeyLksk.giafee.idv...ekdsaaaeellkklgqrsvP 52 
                 ++  pwC +Ckk+k  ++++ ++a e+ +d    + d++  ee+ k +g ++ P
  MMETSP1174-20130828|5012_1  63 MFFAPWCEHCKKMKPEFQRAaNMAEEAgLDLvfaKVDATKHEEVSKLYGVQGYP 116
                 6778**********9887641444332222222245666666666666666666 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.2
   TIGR02196  35 dsaaaeellkklgqrsvPv 53 
                  +++++++++k   ++vP+
  MMETSP1174-20130828|5012_1 252 TQTDMADMMQK--MMGVPM 268
                 55677777665..588886 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 7
   TIGR02196  30 idvekdsaaaeellk 44 
                 +d+e+d+a  e++l 
  MMETSP1174-20130828|5012_1 320 VDIEDDNALLEDMLT 334
                 699999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.42
# Mc/sec: 1382.74
//
Query:       MMETSP1174-20130828|5022_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|5021_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.3   0.1    1.8e-06   24.7   0.1    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    3.8e-06   24.5   0.1    6.5e-06   23.8   0.0    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.8e-06   22.5   0.3    6.7e-06   22.1   0.2    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0028   15.1   0.1      0.017   12.5   0.1    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.8e-09   1.8e-06     338     430 ..      17     109 ..       3     112 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.8e-09
   TIGR00990 338 GifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldp 430
                  + +++ ++ e+al+ +s ++eld +  ++   ra   ++l++ + a +d ++a+k+d +    y+ ++   f ++ef+ a   + k +dl p
  MMETSP1174-20130828|5021_1  17 ATDQLVDDDFEGALESFSAALELDANSVKALTGRAATFIKLEKYTSALQDANAAVKLDEKCEVAYFRKGMACFALDEFETALDAFRKGKDLQP 109
                 5667888999****************999*****************************88777777888889*******************87 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.3e-09   6.5e-06      32     116 ..      24     108 ..      12     130 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.3e-09
   TIGR02552  32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                  ++e A++ F++   ld+++ k + g aa++ +l++y+ A++   +a++ld++  +++++ +   +al+e e Al+a++   +++
  MMETSP1174-20130828|5021_1  24 DDFEGALESFSAALELDANSVKALTGRAATFIKLEKYTSALQDANAAVKLDEKCEVAYFRKGMACFALDEFETALDAFRKGKDLQ 108
                 57999*************************************************************************9776665 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   6.6e-09   6.7e-06     203     285 ..      20     102 ..       9     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.6e-09
   TIGR02917 203 llssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlq 285
                 +l+ +++e Al+++  a+el+ n+++al  +a + ++++++  A ++a+a++k   +   a + k++  f   +fe A++++ 
  MMETSP1174-20130828|5021_1  20 QLVDDDFEGALESFSAALELDANSVKALTGRAATFIKLEKYTSALQDANAAVKLDEKCEVAYFRKGMACFALDEFETALDAFR 102
                 66778889999999999999999999999999999999999999999999998888888888889999999999999988875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.3   0.00038      0.39      41      97 ..      20      76 ..       9      81 .. 0.85
   2 !   12.5   0.1   1.7e-05     0.017      31     101 ..      44     114 ..      37     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00038
   TIGR02521 41 YleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpn 97
                 l  +d+e A e+   Aleld+++ +a   +A  + +l + + A +  + A++l+++
  MMETSP1174-20130828|5021_1 20 QLVDDDFEGALESFSAALELDANSVKALTGRAATFIKLEKYTSALQDANAAVKLDEK 76
                566789999999999999999999999999999999999999999998888888765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.7e-05
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 +k+ +  a+++++ +++++A ++ + A++ld k + a+   +++   l e e A ++frk+  l+p   d 
  MMETSP1174-20130828|5021_1  44 VKALTGRAATFIKLEKYTSALQDANAAVKLDEKCEVAYFRKGMACFALDEFETALDAFRKGKDLQPPGKDS 114
                 677788899****************************************************9999977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 970.51
//
Query:       MMETSP1174-20130828|5023_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|5025_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|5026_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|5030_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1174-20130828|5034_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1338.75
//
Query:       MMETSP1174-20130828|5032_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       690  (0.168211); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.37u 0.24s 00:00:02.61 Elapsed: 00:00:02.43
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|5044_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|5040_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   13.5   0.9      0.082    9.8   0.0    2.1  2  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     2e-05     0.082     142     189 ..     187     255 ..     166     272 .. 0.84
   2 !    1.9   0.1     0.005        20     223     244 ..     328     349 ..     305     353 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2e-05
   TIGR03921 142 vkyalekdvvvvAaagnegqdgsk.....................tvvyPAaypgVlaVgsidrsgeps 189
                   +a++++v ++Aa+g  g++ s                        ++PA+ p+Vl+Vg+ + ++   
  MMETSP1174-20130828|5040_1 187 FLKAASRGVTLLAATGDGGSHFSFgafptndamgqalnaascayaLPTFPAESPYVLGVGGEQWNQDDG 255
                 557999***********888888799*****************9999*************987766655 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.005
   TIGR03921 223 espleGtSfAaplVsgvAaLvr 244
                 + +  GtS +ap  +gv+ L+ 
  MMETSP1174-20130828|5040_1 328 QYTTGGTSASAPSFAGVVSLLN 349
                 55567*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1647.98
//
Query:       MMETSP1174-20130828|5053_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 613.36
//
Query:       MMETSP1174-20130828|5052_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   51.2   0.0    2.1e-06   25.8   0.0    2.5  3  TIGR00229 sensory_box: PAS domain S-box protein
    1.2e-12   45.0   0.0    6.8e-07   26.0   0.0    2.2  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
  ------ inclusion threshold ------
      0.042    9.9   0.4       0.06    9.4   0.3    1.1  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   1.9e+03      14      36 ..      45      68 ..      42      70 .. 0.63
   2 !   22.8   0.0   1.2e-08   1.7e-05      14     105 ..     107     197 ..     103     204 .. 0.75
   3 !   25.8   0.0   1.5e-09   2.1e-06      14      99 ..     267     349 ..     259     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.4
   TIGR00229 14 spdaiivvd.eeGnilyvNrafee 36
                +++a+  +   + +i+++N++f e
  MMETSP1174-20130828|5052_1 45 AHAALSSIEsTDATIQQLNEKFNE 68
                555555554146788999999987 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.2e-08
   TIGR00229  14 spdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrv.krkdGseiwvevsvspirdagg 105
                 +p  +  +d+  +i+++N a+ ++ GY+  e+ G++++       dr+ ++e+++ + e    ++ +++ v ++kdG+ +  ++++ p+  +++
  MMETSP1174-20130828|5052_1 107 TPLVLTEYDHPYRIIHTNAAWTDLCGYQNHEVAGMTLAFlQGEATDRDDIQELLNSATE---TGYASTEIVnYKKDGTPFMNKIALIPVFGNSE 197
                 5666777888899**************************33344455555555555555...66777777778*****9999999988886444 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 1.5e-09
   TIGR00229  14 spdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvsp 99 
                 s++a++++d  G+i+ vNr +  +fGY   e++Gr+    +  ++  +++ + +++l+  +++ ++  ++ +k+G+ +   +++ p
  MMETSP1174-20130828|5052_1 267 SDEALCLTDNIGRIITVNRHWVALFGYNLNEVEGRTCKL-LQGPKTRHIDTLNRNILS-LQMTSGMIINY-KKNGTAFRNGLTIIP 349
                 789********************************9987.778888888888888888.66888888887.888887766555555 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0     5e-10   6.8e-07      20     102 ..     114     196 ..     103     208 .. 0.90
   2 !   16.6   0.0   3.4e-07   0.00046      14     118 ..     268     375 ..     262     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 5e-10
   TIGR02938  20 tdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlnea 102
                  d    i+++naa++++ Gy ++ev G   + l  + t ++  q+l +s +e    + +++n +kdg+ ++ ++++ Pv  ++
  MMETSP1174-20130828|5052_1 114 YDHPYRIIHTNAAWTDLCGYQNHEVAGMTLAFLQGEATDRDDIQELLNSATETGYASTEIVNYKKDGTPFMNKIALIPVFGNS 196
                 5667789***********************************************************************98765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.4e-07
   TIGR02938  14 pvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPv.....lneaGetthflGmhrdvtel 118
                 + a+ +td+   i+ +n+ +  + Gy  +ev G+   +l   +t       l + +   +  +G ++n +k+g+ +   lt+ P+     ++++ +  +flG   d+ ++
  MMETSP1174-20130828|5052_1 268 DEALCLTDNIGRIITVNRHWVALFGYNLNEVEGRTCKLLQGPKTRH--IDTLNRNILSLQMTSGMIINYKKNGTAFRNGLTIIPIphdcsVDNSHKRPFFLGQSCDLGNE 375
                 55899**********************************9988865..589999******************************85555566666777777777666655 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   4.4e-05      0.06     307     364 ..       9      66 ..       2      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.4e-05
   TIGR03007 307 sanpvyqqlqielaeaeaeiaslearvaelearierlesllreipeveaeltqLnrdy 364
                 +a+  +q+l+  +ae + +i++le   a+l  ++e  +++l  i + +a+++qLn + 
  MMETSP1174-20130828|5052_1   9 QAELALQELRRLIAEKDLRITALELMNAQLIWEVESAHAALSSIESTDATIQQLNEKF 66 
                 556779************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.61
# Mc/sec: 859.01
//
Query:       MMETSP1174-20130828|5055_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-08   29.1  64.0      3e-07   26.4  43.3    1.8  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.3e-07   25.1  57.8    1.6e-05   20.6  18.8    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        8.7    3.3  43.9       0.51    7.3  14.1    2.4  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4  43.3   2.2e-10     3e-07     240     529 ..       2     287 ..       1     289 [. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.2e-10
   TIGR02168 240 eleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelq.elkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglseg.vkallknksklagilgvlse 529
                 ++ e++e +k   +e++++ ++++e+e ++ +l++  + l++++++  ++++ +++ ++ +l ++ ++++++ e++++e+ ++e + ee+++k+  lee++++le +l++++ ++++l ++++e      +l  +++e+e+ ++++r++  ++++ +++l+   ++++a  +++++ +++l + + +++++l +++a++++ q+++ el +e++ l++e+++l +++eel++e ++  ++l++ ++e+++++a+++s+ + q+++   +e+ v++++++ ++ + ++++++e
  MMETSP1174-20130828|5055_1   2 KMTEMQEYVKTIYDEMNAAMNQASEIEHQFRTLQAFANALHDKQKKPLAAWYqQTNDAMLALAEQNKVYRQKSEDADDERRQYEMEKEEERAKNLMLEEQTSRLEHDLAQAQSKHTDLGKKHQE------KLDLQNSEKEQLMNQKRDADERAKSLQTRLDGVTSQARALHSESQKAQAELANAQGSHNNALGNLDAKFSASQATVRELSNEKHRLQSERQTLMKRVEELNNEKKTTAEELNAIRREIDRKNAEMASTSRRQQKALAQKESmVNKIKEQLEQTKKLHKTVKE 287
                 67888999999999999999**************999999988887666655056667789999999************************************************999999999......455555555555555555555555555666666666666666666666666777777777788888999999999999999999999999999999999999999999999999999999999999998887776555544155555555556656666655 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2  17.1   1.7e-05     0.023     790     935 ..       6     153 ..       2     161 .. 0.87
   2 !   20.6  18.8   1.2e-08   1.6e-05     307     462 ..     151     307 ..     145     312 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.7e-05
   TIGR02169 790 seekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekk.keeleaeiekkrkrlkelkaklealeeels 935
                  +e +++i +e+++  ++ s+ie++ + ++a  n+l+  +k+ l    q+ ++ + +l eq+k  +++ e+   + ++ e e ee +a+   Lee+ + L+++  +++++   l kk +e+l+++  +k++ +++++ + e +++  +
  MMETSP1174-20130828|5055_1   6 MQEYVKTIYDEMNAAMNQASEIEHQFRTLQAFANALHdKQKKPLAAWYQQTNDAMLALAEQNKVYRQKSEDADDERRQYEMEKEEERAKNLMLEEQTSRLEHDLAQAQSKHTDLGKKhQEKLDLQNSEKEQLMNQKRDADERAKSLQT 153
                 67899*******************************988899999**************************************************************99999886551667888888888888877766666555444 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.2e-08
   TIGR02169 307 leraiaekeeeledaeerlakaeaeidklke....eieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlk 462
                 l+  ++   ++++ +  +++ka+ae+ + +      + +l+ +  + ++  ++l++e + l+ e+++l++++ee+++e +++ eel++ ++++++ + e+ +     +r +  l ++e+ ++++k++le+ ++ ++ ++e++++l++  ++ +++l  ++
  MMETSP1174-20130828|5055_1 151 LQTRLDGVTSQARALHSESQKAQAELANAQGshnnALGNLDAKFSASQATVRELSNEKHRLQSERQTLMKRVEELNNEKKTTAEELNAIRREIDRKNAEMASTS---RRQQKALAQKESMVNKIKEQLEQTKKLHKTVKERVDHLQNDNEHLRGELDGIH 307
                 44444444555555555555555555555440000455789999999****************************************************99999...5666679999999999*********9999999999999998888887777665 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3  14.3      0.16   2.1e+02      26     169 ..      25     168 ..       5     186 .. 0.71
   2 ?    7.3  14.1   0.00037      0.51      27     145 ..     167     288 ..     158     310 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.16
   TIGR03752  26 skseeeeqtadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvgl.Gleegdkaqses 169
                 s+ e++ +t ++ ++ l  ++ k l +   + +d +  l+ ++k  r++ ++ ++e ++ + e+e+ ++++  ++e+ +++le    +++++++ l ++ ++  +l ++ +++l +++  +++ +++l + l G++++++a +++
  MMETSP1174-20130828|5055_1  25 SEIEHQFRTLQAFANALHDKQKKPLAAWYQQTNDAMLALAEQNKVYRQKSEDADDERRQYEMEKEEERAKNLMLEEQ-TSRLEHDLAQAQSKHTDLGKKHQEKLDLQNSEKEQLMNQKRDADERAKSLQTRLdGVTSQARALHSE 168
                 33333333666667777788888888888899999999999999999999999999888888888888887766666.4567777777777777777777766666677777888888888888888888887877776665543 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00037
   TIGR03752  27 kseeeeqtadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqa...leaekkelkkekeqlkeeqakleelldelqkkledvaae 145
                 ++++++q + ++++ +  + l +l+++ + ++ t+r l +e + l++e ++l+k  e+l++e+++  ++ + ++++i+++   +++++++ +k+  q ++ ++k++e+l++++k  ++v+++
  MMETSP1174-20130828|5055_1 167 SESQKAQAELANAQGSHNNALGNLDAKFSASQATVRELSNEKHRLQSERQTLMKRVEELNNEKKTTAEELNAIRREIDRKnaeMASTSRRQQKALAQKESMVNKIKEQLEQTKKLHKTVKER 288
                 33333332333344445556677889999**********************************99999999998888765111444444444444455555555666655555444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       854  (0.208191); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.20s 00:00:01.35 Elapsed: 00:00:00.92
# Mc/sec: 449.05
//
Query:       MMETSP1174-20130828|5054_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   47.6   0.0    1.7e-13   47.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.5e-06   25.7   0.1    2.5e-06   25.0   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   8.1e-17   1.7e-13       7     233 ..     216     436 ..     211     450 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 8.1e-17
   TIGR03903   7 aikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa...dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqR 233
                 a+k+l + + +++ +    + e ++  +++hP iv L    +++   l+ v +y +G  l + +++   +G  +        +    al   h + +v+RDLk +ni++   d++ h  + DFG++      + ad+++ t +t + G+ +Y aPe + g +  ++ D +++G++v+e Lt ++    +     +++++   dv +P    +    + + + l k ++ R
  MMETSP1174-20130828|5054_1 216 AMKVLEKSTIKKKGQEVHTKSERNILHEIEHPFIVYLYYAFQTNR-KLYMVTDYFPGNNLFAHIQQsriQGGFAEPRARFYSAELCCALDFLHINNIVYRDLKLENILM---DMDGHIVLTDFGLSK----DQVADVTQPTMKT-FCGTVEYMAPELVSGQTYSSAVDWWSYGVLVFEMLTTRTPFFSKNGRSEIFQNIKKRDVKFPADKISPEARAFITHLLDKVPQRR 436
                 89999999999999999999********************99998.9*************998886444899988888888999999********************97...66679999****974....3334677777765.89**********************************9988877777777888999999998876666666666666666666665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.2e-09   2.5e-06      26     139 ..     216     340 ..     191     350 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.2e-09
   TIGR03724  26 vkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpe.ekkivmeyiegkklkdlleekel..........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkks 139
                   K   ++++ +k ++  t++E ++l e+++  + + + y ++++ +  +v +y  g++l   +++++            +  e+  ++  lH ++iv+ Dl  +Ni+++ d++++l DfGL+k +
  MMETSP1174-20130828|5054_1 216 AMKVLEKSTIKKKGQEVHTKSERNILHEIEHPFI-VYLYYAFQTNrKLYMVTDYFPGNNLFAHIQQSRIqggfaeprarFYSAELCCALDFLHINNIVYRDLKLENILMDmDGHIVLTDFGLSKDQ 340
                 3333334444444445567888888888777644.44444444441456788999999999999998778999988877778899999*********************54999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|5061_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|5058_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1381.17
//
Query:       MMETSP1174-20130828|5063_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1474.64
//
Query:       MMETSP1174-20130828|5062_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-29  101.3   0.4      1e-26   91.6   0.1    3.0  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    3.8e-29   99.2   3.1    2.6e-28   96.5   2.2    2.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.9e-14   51.1   4.9    6.3e-12   42.7   2.0    2.7  2  TIGR00485 EF-Tu: translation elongation factor Tu
    3.2e-11   40.9   5.1    1.6e-09   35.3   3.5    2.3  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.5e-10   38.5   3.2    2.4e-07   28.0   0.7    2.6  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.9e-09   34.3   0.1    1.6e-08   32.3   0.0    1.9  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.2e-08   30.6   2.7    8.7e-07   25.8   0.1    2.8  3  TIGR00487 IF-2: translation initiation factor IF-2
    5.5e-06   22.9   0.5    1.8e-05   21.2   0.0    2.0  3  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.1e-05   22.1   0.1      0.031   11.8   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    0.00015   18.7   0.0      0.024   11.5   0.0    2.3  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00058   16.0   0.2     0.0011   15.1   0.1    1.5  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
     0.0022   14.3   0.1      0.031   10.5   0.0    2.1  2  TIGR00503 prfC: peptide chain release factor 3
     0.0036   14.0   0.1       0.36    7.4   0.0    2.4  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0048   13.1   0.3      0.011   11.9   0.2    1.6  1  TIGR01393 lepA: GTP-binding protein LepA
     0.0058   14.7   0.1        5.7    5.0   0.0    3.3  3  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0089   12.7   0.4      0.013   12.2   0.3    1.2  1  TIGR00075 hypD: hydrogenase expression/formation protein HypD


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.052        13       2      22 ..      85     105 ..      84     111 .. 0.88
   2 !   91.6   0.1   3.9e-29     1e-26      45     248 ..     162     402 ..     159     438 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.052
   TIGR00475   2 iiataGHvDHGKttLlkaltg 22 
                  +a+ G vD GK tL+  lt 
  MMETSP1174-20130828|5062_1  85 RVAMIGNVDSGKSTLIGVLTS 105
                 6899*************9996 PP

  == domain 2    score: 91.6 bits;  conditional E-value: 3.9e-29
   TIGR00475  45 lpledkvlgliDvPGHekflknalagvggi..daalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeef...........l.........knakivkvsAktGqGieeLkkelknLles...........ldakdkqk.plrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlep....inkkvrvkalqaqnqsvekavAGqRialnladvdk 248
                 +++ d+ ++liD  GHek+lk+ + g++g+  d alLvv a+ Gv+  tkEH+a++  l+++ + vv+tK+D+  +  +k++ + + + l+++                       + + ++ +s +tG G++ Lk+ l +L              +d++++    ++++iD +++v+G+G+vv Gt  +G+vkv+  l l p    + ++v v+++++++qsv +   Gq  ++++  + +
  MMETSP1174-20130828|5062_1 162 VDQSDRAITLIDLCGHEKYLKTTVFGLTGMmpDLALLVVGANMGVQIMTKEHVAIACALQLP-IAVVVTKVDICPQPILKQTRQSIAKCLRQNRKmpypvkdssqvEaaaqavisdRVTPVFAISSVTGMGLKLLKDFLGKLSRNprnflaptnqpADKSNIPLpDIHFPIDGIYEVRGVGMVVGGTLTRGNVKVNQTLLLGPdrvgVFVPVTVRSIESKRQSVPEVHSGQSATFAIRVLGR 402
                 57889*********************99976689****************************.99************9999999998887654321111111111111111111113345789****************999754211211111112333333224799********************************76553366799*******************99888875544 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   2.2     1e-30   2.6e-28       4     378 ..      80     487 ..      76     492 .. 0.75

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 1e-30
   TIGR00483   4 ekehlnvafighvdsgkstlvgrllyea...gaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkk...fetdkyevtivdapghrdfiknmitgas..qadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellk...kvgykpdevefipvsaykgdnvvkksenapwyk................gktllea...ldkleapekpvdkpl...ripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagv....sgevksiemhheqieqaepgdnigfnvrgvskk......dirrgdvagdadnppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktg 378
                 + + + va+ig vdsgkstl+g l   +   g    r l   ++  +e+g++s     ++     e+    + +  ++     + +   +t++d  gh  ++k  + g +    d a+lvv ++ g   vq  t+ehv +a +l +  ++v + k+d     +   ++ ++ +++ l+   k+ y +++   +  +a   + v++    +p +                 gk   +    l   ++p    + pl    +pi+ +y++ gvg v  g +  g +k+ +++++ p  v       v+sie + + +++ + g+   f +r ++++        r+g v  +  + p ++++f+a +++l+h ++i+ gy pv+++   + a  +  +      rtg++ + + +f+  g
  MMETSP1174-20130828|5062_1  80 DNDDVRVAMIGNVDSGKSTLIGVLTSAClddGRGLARSLVLRHRHEQENGRTSAVTVELMGYKDGEQVVPQARQHNQRWaevVDQSDRAITLIDLCGHEKYLKTTVFGLTgmMPDLALLVVGANMG---VQIMTKEHVAIACALQLP-IAVVVTKVDICP--QPILKQTRQSIAKCLRqnrKMPYPVKDSSQVEAAA---QAVIS-DRVTPVFAissvtgmglkllkdflGKLSRNPrnfLAPTNQPADKSNIPLpdiHFPIDGIYEVRGVGMVVGGTLTRGNVKVNQTLLLGPDRVgvfvPVTVRSIESKRQSVPEVHSGQSATFAIRVLGRRpalrrsSFRKGMVMVHEADKPMAVRHFEAAVIILHHSTTISEGYQPVVHCGVVRQAASMEAIHGSESLRTGQRAQVRFRFMYYG 487
                 567899****************9976552225444455554566778889988777777766555543333332222221114455678****************99976225799***9999888...999************985.89999****975..56666777777776651115677777766666554...33333.234566656677778778888888555444400044555666666667644479********************************9975411224689************************887652222226789****************************************************999*******999888887766 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017      0.44      10      47 ..      81     118 ..      74     146 .. 0.79
   2 !   42.7   2.0   2.5e-14   6.3e-12      72     391 ..     164     511 ..     155     515 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0017
   TIGR00485  10 kphvnvgtighvdhgkttltaaittvlakegkaaakky 47 
                  + v v  ig vd gk+tl   +t +  ++g++ a++ 
  MMETSP1174-20130828|5062_1  81 NDDVRVAMIGNVDSGKSTLIGVLTSACLDDGRGLARSL 118
                 57899*******************99988888777655 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 2.5e-14
   TIGR00485  72 tekrhyahvdcpghadyvknmitgaaqm..dgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrells...eydfpgddvpivrgsalkale...............gdaeweekilelmeavdeyiptperevdkpfl......laiedvfsitgrgtvvtgrvergevkvgeeveivglk..etkkttvtgvemfkklldeakagdnvgvllr......gvkkeeiergqvlakpg.sikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpegvemvlpgdnvkltvelisp.valeeglrfaireggrtvgagvvsk 391
                  ++r  + +d  gh  y+k  + g + m  d a+lvv a  g+   t+eh+ +a  + +p  vv + kvd+  +  l +     +++ l    +  +p +d   v+ +a   +                g +  ++ + +l  +  +++   ++  dk+ +      ++i+ ++ + g g vv g + rg+vkv++++ +   +       tv  +e  ++ + e ++g+ +   +r       +++   ++g+v+++ +    + ++fea+v +l++      t++ +gy+p  +      + ++e ++g+e +  g++ ++ ++++     l  g  f  reg r+ g g ++k
  MMETSP1174-20130828|5062_1 164 QSDRAITLIDLCGHEKYLKTTVFGLTGMmpDLALLVVGANMGVQIMTKEHVAIACALQLPIAVV-VTKVDICPQPILKQTR-QSIAKCLRqnrKMPYPVKDSSQVEAAAQAVISdrvtpvfaissvtgmGLKLLKDFLGKLSRNPRNFLAPTNQPADKSNIplpdihFPIDGIYEVRGVGMVVGGTLTRGNVKVNQTLLLGPDRvgVFVPVTVRSIESKRQSVPEVHSGQSATFAIRvlgrrpALRRSSFRKGMVMVHEAdKPMAVRHFEAAVIILHH-----STTISEGYQPVVHCGVVRQAASMEAIHGSESLRTGQRAQVRFRFMYYgEFLLPGATFLFREG-RAKGIGKITK 511
                 567888899***************99887899****************************6655.79***99988666654.455555541114568999999999999888889999999999999887788888888898888888765555555543222222389**************************9985533222245678999***************99887777222233356788999***9876514567789********86.....478899**********************************9998865156778999999996.7888888876 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   3.5   6.1e-12   1.6e-09       4     166 ..      82     252 ..      79     445 .. 0.60

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 6.1e-12
   TIGR03680   4 pevniglvGhvDhGkttlvkaltGvwtd...........thseelkrg....isikl.GyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaa.lm.dgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkg 166
                  +v ++++G vD Gk+tl+  lt   +d           +h  e+  g    +++ l Gy d e +  +  ++++++     +   +   +  r+++++D  Ghe  + t + G + +m d alLv+ an  v q  tkeh++    +    i +v  k+d+  +    +  + i + +++
  MMETSP1174-20130828|5062_1  82 DDVRVAMIGNVDSGKSTLIGVLTSACLDdgrglarslvlRHRHEQENGrtsaVTVELmGYKDGEQVVPQARQHNQRW-----A---EVVDQSDRAITLIDLCGHEKYLKTTVFGLTgMMpDLALLVVGANMGV-QIMTKEHVAIACALQLP-IAVVVTKVDICPQPILKQTRQSIAKCLRQ 252
                 5899***************9999876652222222222244444444411113333224444433332222222222.....2...2234578*************9999999965244699***********.*******9888777765.6677789*998766555555555554443 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.7   9.2e-10   2.4e-07       2     145 ..      85     233 ..      84     252 .. 0.67
   2 !    9.7   0.0   0.00034     0.087     236     348 ..     345     470 ..     325     482 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 9.2e-10
   TIGR02034   2 rfltcGsvddGkstliGrl....lhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayry...fstdkrkfivadtPGheqytrnmatgasta..dlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidl 145
                 r+   G+vd GkstliG l    l d + +    +   +++ ++  t+  +++l    dG q   +   +     r+    +   r   + d  Ghe+y + ++ g +++  dla+l+v a  Gv+  t+ h  ia  l +    + v k+d+
  MMETSP1174-20130828|5062_1  85 RVAMIGNVDSGKSTLIGVLtsacLDDGRGLARSLVLRHRHEQENGRTSAVTVELMGYKDGEQVVPQ---ARQHNQRWaevVDQSDRAITLIDLCGHEKYLKTTVFGLTGMmpDLALLVVGANMGVQIMTKEHVAIACALQLPI-AVVVTKVDI 233
                 66779************9822223333333333222222222222233333444444444443322...233344541115678899*****************998875459************************999864.455888887 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00034
   TIGR02034 236 aGtiasGsvkvGdevvvlpsgre....srvarivtfdgelekaeaGeavtlvle........deidisrGdllaaadeapevadqfaaelvwlad.eallpGksyklklgtkkvrasvaeikhkvd 348
                  Gt++ G+vkv +++ + p+ +       v +i +  +++ + + G++ t+ ++        +     +G ++++++++p+++++f+a ++ l++ ++++ G +  ++ g  ++ as+++i+    
  MMETSP1174-20130828|5062_1 345 GGTLTRGNVKVNQTLLLGPDRVGvfvpVTVRSIESKRQSVPEVHSGQSATFAIRvlgrrpalRRSSFRKGMVMVHEADKPMAVRHFEAAVIILHHsTTISEGYQPVVHCGVVRQAASMEAIHGSES 470
                 589999999999999998886541111567888999999999999999998654222222223445678999*****************999976257999**********999999999986555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   6.3e-11   1.6e-08       3     161 ..      83     272 ..      81     275 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 6.3e-11
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyv..teqieedGkt...................................ykvnllDTaGqedfdairrlyvreversl..evvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfkl 161
                 +++++++G vd+GKstL+  l+        ++ g  r++v   + ++e+G t                                     ++l+D+ G+e++       ++++   l  ++ d+++lv+ ++ g++  tke    a + + pi +vv+K+D+     lk+  +s+++ l +++ ++ ++++ + ++++++ 
  MMETSP1174-20130828|5062_1  83 DVRVAMIGNVDSGKSTLIGVLTSAC---LDDGRGLARSLVlrHRHEQENGRTsavtvelmgykdgeqvvpqarqhnqrwaevvdqsdRAITLIDLCGHEKY-------LKTTVFGLtgMMPDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDICPqpILKQTRQSIAKCLRQNRKMPYPVKDSSQVEAAAQA 272
                 689******************9988...455556666554216778999999*************************************************.......6666665533678*************998888777777799************98888888889999999***************9998876 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33        86      90     108 ..      86     104 ..      41     111 .. 0.76
   2 !   25.8   0.1   3.4e-09   8.7e-07     129     199 ..     162     233 ..     153     248 .. 0.85
   3 ?    3.2   0.0     0.024       6.2     500     558 ..     334     393 ..     330     400 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.33
   TIGR00487  90 vtimGhvDhGktsLLdsir 108
                 v+++G vD Gk +L+ ++ 
  MMETSP1174-20130828|5062_1  86 VAMIGNVDSGKSTLIGVLT 104
                 7899**********98776 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 3.4e-09
   TIGR00487 129 vekedkkkitflDtPGheaftsmrarG..akvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDk 199
                 v++ d+  it++D  Ghe + +    G    + D+++lvv a+ Gv+  t+e +  a a + Pi v++ k+D 
  MMETSP1174-20130828|5062_1 162 VDQSDR-AITLIDLCGHEKYLKTTVFGltGMMPDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDI 233
                 455555.8***********97666666225689**************************************95 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.024
   TIGR00487 500 vfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvife.GeidsLkrfkddvkeveegyeC 558
                 +++v  +G + G+  ++G +k +++l +  d v +f    + s+   ++ v ev++g+  
  MMETSP1174-20130828|5062_1 334 IYEVRGVGMVVGGTLTRGNVKVNQTLLLGPDRVGVFVpVTVRSIESKRQSVPEVHSGQSA 393
                 6788899**************************99962689*************999865 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.69   1.8e+02       7      21 ..      86     100 ..      84     106 .. 0.88
   2 !   21.2   0.0     7e-08   1.8e-05      72     144 ..     170     244 ..     161     275 .. 0.83
   3 ?   -2.8   0.0       1.2   3.2e+02     508     532 ..     373     397 ..     334     402 .. 0.52

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.69
   TIGR00491   7 vavlGhvdhGkttll 21 
                 va++G vd Gk+tl+
  MMETSP1174-20130828|5062_1  86 VAMIGNVDSGKSTLI 100
                 7899*********97 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 7e-08
   TIGR00491  72 lvidtPGheaf..tslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGwkskegkf 144
                  +id  Ghe +  t++    G + d+a+lvv  n G++  t+e v i   l+ P  v   k+d  p    k++++
  MMETSP1174-20130828|5062_1 170 TLIDLCGHEKYlkTTVFGLTGMMPDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDICPQPILKQTRQ 244
                 689******98446677777*******************************************988766655554 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.2
   TIGR00491 508 evreikdrgenvkeakagkavsiai 532
                 +vr+i+ + ++v e++ g++ + ai
  MMETSP1174-20130828|5062_1 373 TVRSIESKRQSVPEVHSGQSATFAI 397
                 5677777777777777777766666 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0019      0.49      14      40 ..      79     105 ..      68     108 .. 0.83
   2 !   11.8   0.0   0.00012     0.031     106     176 ..     198     268 ..     190     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0019
   TIGR03598  14 pedklpeiafaGrSNvGKSsliNaLtn 40 
                  +++ + +a++G   +GKS+li +Lt+
  MMETSP1174-20130828|5062_1  79 VDNDDVRVAMIGNVDSGKSTLIGVLTS 105
                 4567789****************9996 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00012
   TIGR03598 106 llvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkke 176
                 l+v + ++++ + +e ++++ + ++p+ vv+tK+D + +  lk++ ++++k l+++++++  +  Ss+ + 
  MMETSP1174-20130828|5062_1 198 LVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDICPQPILKQTRQSIAKCLRQNRKMPYPVKDSSQVEA 268
                 66777778888888999999999********************************9887777777776555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   9.4e-05     0.024     171     196 ..      79     104 ..      37     107 .. 0.68
   2 !    5.0   0.0    0.0089       2.3     259     323 ..     194     257 ..     176     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.4e-05
   TIGR03594 171 eeeepikiaiiGrpNvGKStLvNall 196
                  +++ +++a+iG   +GKStL+  l+
  MMETSP1174-20130828|5062_1  79 VDNDDVRVAMIGNVDSGKSTLIGVLT 104
                 235579***************98775 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0089
   TIGR03594 259 dvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfap 323
                 d++llv+ a+ g++   ++ + ++   + ++ +vv K+D++  +  l+++++++ + l++ + +p
  MMETSP1174-20130828|5062_1 194 DLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDIC-PQPILKQTRQSIAKCLRQNRKMP 257
                 789999999999999999999999999*************9.88888888888888887776665 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.4e-06    0.0011       4     128 ..      86     233 ..      84     276 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.4e-06
   TIGR01394   4 iaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd.......................tkinivDtPGhaDfGG.evervlsmv.dgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDr 128
                 +a+i  vD Gk tl+  l   s  l++   ++  ++     e+e G t    +  + ykd                         i ++D  Gh  +    v    +m+ d +ll+v a+ G+   t+  +  a +l+l + vv+ k+D 
  MMETSP1174-20130828|5062_1  86 VAMIGNVDSGKSTLIGVLT--SACLDDGRGLARSLVLRHRHEQENGRTSAVTVELMGYKDgeqvvpqarqhnqrwaevvdqsdRAITLIDLCGHEKYLKtTVFGLTGMMpDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDI 233
                 89*************9775..55679999999999999999*******99999999999999*****************999999**********98651565555555499************************************95 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00012     0.031      76     143 ..     163     232 ..     159     240 .. 0.91
   2 ?    1.2   0.0     0.078        20     237     278 ..     266     307 ..     244     316 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   TIGR00503  76 dyrdklvnlldtpGhedfsedtyrtltav..dsalmvidaakGveertrkllevtrlrdlpiltflnkld 143
                 d  d+ + l+d  Ghe + + t   lt +  d al+v+ a  Gv+  t+  + ++   +lpi   + k+d
  MMETSP1174-20130828|5062_1 163 DQSDRAITLIDLCGHEKYLKTTVFGLTGMmpDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVD 232
                 5678899****************999975559**********************9999********9998 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.078
   TIGR00503 237 aefdkeavlaGeltpvffGtalgnfGvdllldallqyaakpe 278
                  e   +av++  +tpvf  ++++ +G++ll d l + + +p+
  MMETSP1174-20130828|5062_1 266 VEAAAQAVISDRVTPVFAISSVTGMGLKLLKDFLGKLSRNPR 307
                 4777899********************999988877777775 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015       3.9       8      29 ..      84     105 ..      78     109 .. 0.88
   2 !    7.4   0.0    0.0014      0.36      88     136 ..     194     242 ..     177     285 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.015
   TIGR03918   8 lhialfGrrNaGKSsliNaltg 29 
                 +++a++G+  +GKS+li  lt 
  MMETSP1174-20130828|5062_1  84 VRVAMIGNVDSGKSTLIGVLTS 105
                 689**************99985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
   TIGR03918  88 dlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeekekek 136
                 dlallvv a+++++ + +e ++ + + ++p+ vv++k+d++ +   k++
  MMETSP1174-20130828|5062_1 194 DLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDICPQPILKQT 242
                 9***************************************987533222 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   4.4e-05     0.011      66     154 ..     163     254 ..      84     283 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.4e-05
   TIGR01393  66 dgeeyvlnlidtPGhvdfsyevsrslaac..eGalllvdaaqGveaqtlanvylalekdleiiPvinkidl.PsadvervkkeieeviGlda 154
                 d+++  + lid  Gh  +       l+    + all+v a  Gv+  t  +v +a   +l i  v+ k+d+ P+   +++++ i++ +  ++
  MMETSP1174-20130828|5062_1 163 DQSDRAITLIDLCGHEKYLKTTVFGLTGMmpDLALLVVGANMGVQIMTKEHVAIACALQLPIAVVVTKVDIcPQPILKQTRQSIAKCLRQNR 254
                 4556678899999999988777777765422789************************************8577788888888988775544 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.029       7.5       2      21 ..      85     104 ..      84     110 .. 0.88
   2 ?    0.6   0.0       0.5   1.3e+02      64     102 ..     194     235 ..     175     252 .. 0.76
   3 ?    5.0   0.0     0.022       5.7     103     141 ..     262     300 ..     255     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.029
   TIGR02528   2 rimliGsvgcGkttLtqaLk 21 
                 r+++iG+v++Gk tL+  L+
  MMETSP1174-20130828|5062_1  85 RVAMIGNVDSGKSTLIGVLT 104
                 899************98876 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.5
   TIGR02528  64 dvivlvqsatdeesllspgfasifak...eviglvtkidlae 102
                 d+  lv +a+   + ++ +  +i +    +   +vtk+d+  
  MMETSP1174-20130828|5062_1 194 DLALLVVGANMGVQIMTKEHVAIACAlqlPIAVVVTKVDICP 235
                 566788899999999999988888874434445789**9974 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.022
   TIGR02528 103 adkeierakelLeeagaekiFeissvdekgleelvdyLe 141
                 + +++e a++ +    ++++F issv   gl+ l+d+L 
  MMETSP1174-20130828|5062_1 262 DSSQVEAAAQAVISDRVTPVFAISSVTGMGLKLLKDFLG 300
                 5788999999999999*********************95 PP

>> TIGR00075  hypD: hydrogenase expression/formation protein HypD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   5.2e-05     0.013      11      94 ..     142     229 ..     134     249 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.2e-05
   TIGR00075  11 rdkkavl....klsekikklakklekklkimevCGgheh.tivkyglrdllPenvelvhGPGCPvCvlpaeeidealelaekeeviltt 94 
                 +d ++v+    +  ++ ++++ + ++ ++++++CG ++    + +gl+ ++P+   lv G    v ++++e++  a  l   +  +++t
  MMETSP1174-20130828|5062_1 142 KDGEQVVpqarQHNQRWAEVVDQSDRAITLIDLCGHEKYlKTTVFGLTGMMPDLALLVVGANMGVQIMTKEHVAIACALQ-LPIAVVVT 229
                 55555542111334445555556699*********876525678****************************99998887.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.69u 0.18s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 1222.64
//
Query:       MMETSP1174-20130828|5067_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1305.23
//
Query:       MMETSP1174-20130828|5069_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-09   34.0   0.1    0.00044   17.6   0.0    2.1  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      6e-09   33.3   0.4    2.6e-08   31.3   0.3    1.8  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      9e-09   32.7   0.1    0.00026   18.1   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.5e-08   31.7   0.1      3e-05   21.6   0.0    2.2  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      3e-08   30.4   0.1      2e-05   21.1   0.1    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.4e-08   30.4   0.2    1.9e-05   21.7   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.8e-07   27.7   0.0    0.00038   16.6   0.0    2.0  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.1e-07   28.4   0.0     0.0014   16.0   0.0    2.2  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.4e-07   27.7   0.1    0.00014   19.2   0.0    2.2  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.4e-07   27.4   0.1    0.00087   16.9   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.8e-07   26.9   0.3      0.015   12.7   0.0    2.1  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    7.4e-07   26.4   0.0     0.0041   14.1   0.0    2.0  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      8e-07   26.2   0.6    3.7e-06   24.0   0.4    1.9  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.7e-06   25.5   0.0      0.012   12.9   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.9e-06   25.5   0.2       0.03   11.8   0.0    2.5  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      3e-06   24.7   0.6     0.0022   15.3   0.0    2.1  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.1e-06   23.8   0.0      2e-05   21.2   0.0    1.8  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.7e-06   23.6   0.0     0.0013   15.8   0.0    2.1  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    8.4e-06   22.8   0.1      0.015   12.1   0.0    2.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      1e-05   22.8   0.0      0.042   10.9   0.0    2.1  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.2e-05   22.1   0.0    0.00098   15.7   0.0    2.0  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-05   21.1   0.2     0.0015   14.6   0.1    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      2e-05   22.0   0.2     0.0067   13.7   0.1    2.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.1e-05   21.8   0.0      0.069   10.3   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.2e-05   20.1   0.0     0.0099   12.3   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      5e-05   20.7   0.4    0.00032   18.0   0.2    2.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.5e-05   20.4   0.2     0.0046   14.3   0.1    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    8.4e-05   18.8   0.0      0.037   10.1   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    0.00017   18.9   0.0    0.00027   18.3   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    0.00019   17.7   0.0      0.036   10.1   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    0.00033   18.2   0.1       0.05   11.1   0.1    2.5  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    0.00036   17.1   0.0    0.00054   16.5   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    0.00048   17.5   0.3      0.001   16.5   0.0    1.7  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
     0.0006   17.2   0.0     0.0053   14.1   0.0    2.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0014   15.0   0.2     0.0081   12.5   0.2    1.9  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
     0.0023   14.4   0.0     0.0052   13.3   0.0    1.7  1  TIGR01192 chvA: glucan exporter ATP-binding protein
     0.0025   15.4   0.1       0.94    7.0   0.0    2.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0045   14.1   0.0       0.42    7.7   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
     0.0069   13.9   0.0     0.0098   13.4   0.0    1.3  1  TIGR00455 apsK: adenylylsulfate kinase
     0.0072   13.6   0.0       0.09   10.0   0.0    2.1  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
  ------ inclusion threshold ------
      0.012   12.5   0.1       0.17    8.7   0.1    2.0  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      0.014   12.9   0.3       0.38    8.1   0.0    2.1  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      0.022   12.3   0.1      0.039   11.5   0.1    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      0.035   10.5   0.3       0.19    8.1   0.1    1.9  2  TIGR00955 3a01204: pigment precursor permease
       0.05    9.9   0.0       0.36    7.1   0.0    1.9  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2


Domain annotation for each model (and alignments):
>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.1e-05    0.0037      40      81 ..       2      43 ..       1      75 [. 0.89
   2 !   17.6   0.0   4.8e-06   0.00044     171     233 ..     129     190 ..     114     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.1e-05
   TIGR02769 40 vallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrk 81
                va+ G sG+Gkst+ ++ l    P+ G+v+ r   +  ld++
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDND 43
                7899***************************99888877765 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4.8e-06
   TIGR02769 171 livldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233
                 ++++de   n  l  q++  + l+    e G++++  th lrl+ ++a+ v+ +++G++++ +
  MMETSP1174-20130828|5069_1 129 FLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCV 190
                 46789*9***********************************97.69************9755 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.3   2.9e-10   2.6e-08      32     223 ..       4     194 ..       1     199 [. 0.83

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2.9e-10
   TIGR03873  32 llGPnGsGkstllrllaGllapdaGevdlagadlkalsrra...rarrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                   G  GsGkst+l++    l+p+ G+v++ ++ ++ l   a     +r+  +   ++a ++ls  +  +       ++ a d++  +   d  l+ +   s+a   l+  sGG+   ++     +  P +ll+de  +   +  q+++ +++r+ + + g+tv+ a h l la +++d vv ++gGr++ + pp+e
  MMETSP1174-20130828|5069_1   4 FTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDAldeSNVRIQKAGSYAKALASLSLEESQIQKLASLVGVAARDAPWQSLSDDSRLTLALCFSVAACFLPVESGGQATTIK---DGSDSP-FLLFDELFDNCSLDYQVGTQRVLRTACmELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 66889************************999998887765111456666666777777888888888777778888888899888888899999999***************876655...345566.7889********************9873669***********98.679***********99988875 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00014     0.013      29      63 ..       2      36 ..       1      55 [. 0.85
   2 !   18.1   0.0   2.8e-06   0.00026     167     233 ..     129     194 ..     114     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00014
   TIGR03005 29 valiGpsGsGkstilrilmtletideGsikvegeq 63
                va  G sGsGkst+l+i ++  t ++Gs+++ +  
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSL 36
                678899*************99999*****997655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.8e-06
   TIGR03005 167 vllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpde 233
                  llfde       +       vlr  + e  +t++  th +++ar +ad v+f++ G++++   p+e
  MMETSP1174-20130828|5069_1 129 FLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLAR-MADLVVFMNGGRLIQCVPPEE 194
                 589999865444444445678***********************8.8***********998777765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.2e-07     3e-05      31      74 ..       2      45 ..       1      54 [. 0.88
   2 !    8.0   0.0    0.0047      0.43     158     202 ..     129     174 ..     124     185 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.2e-07
   TIGR02673 31 lfltGasGaGkttllklllgaekpsrGevevagedvarlrerel 74
                +  tG sG+Gk+t+lk+ l +++p+ G+v++  + v+ l++ +l
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDAL 45
                5579***************************9999988877665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0047
   TIGR02673 158 lllaDePtGnlDdelserildllke.lnkrGttvivathdeelver 202
                  ll De   n   + +    ++l++ + + G+tvi ath  +l++ 
  MMETSP1174-20130828|5069_1 129 FLLFDELFDNCSLDYQVGTQRVLRTaCMELGITVIHATHSLRLARM 174
                 567777766655555555556665515688***********99875 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.2e-07     2e-05     482     524 ..       2      44 ..       1      57 [. 0.84
   2 !    7.5   0.0    0.0029      0.27     610     665 ..     130     189 ..     126     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.2e-07
   TIGR03797 482 vaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqa 524
                 va+ G SGsGKSt+l++ L+  +P+ Gsv      ++ ld +a
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDA 44 
                 9****************************98777666666555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0029
   TIGR03797 610 llfDEA..TSALDNr..tQaiVsesleklkvtRiviAHRLSTirnadrilvleeGrvveq 665
                 llfDE      LD +  tQ++   +  +l +t i   H L   r ad ++ ++ Gr++++
  MMETSP1174-20130828|5069_1 130 LLFDELfdNCSLDYQvgTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLIQC 189
                 677774224567765449***************************************997 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0077       0.7       3      30 ..       6      33 ..       4      42 .. 0.86
   2 !   21.7   0.0   2.1e-07   1.9e-05     121     187 ..     129     194 ..     117     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0077
   TIGR01187  3 GpsGsGkttlLrllaGleeldsGkilld 30
                G sGsGk+t+L++     +++ G++ + 
  MMETSP1174-20130828|5069_1  6 GLSGSGKSTVLKICLSKLTPQGGSVQMR 33
                88**********9988889999999886 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.1e-07
   TIGR01187 121 iLLlDepl..saLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187
                  LL+De +   +LD+++    q  l++   +lGitv+  th  + a  m+d ++ ++ G+++q   pee
  MMETSP1174-20130828|5069_1 129 FLLFDELFdnCSLDYQVG--TQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 578888772245777765..68899*****************9988.7***************998886 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.2e-06   0.00038     496     539 ..       2      45 ..       1      82 [. 0.89
   2 !    9.4   0.0   0.00066      0.06     621     681 ..     126     188 ..     114     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.2e-06
   TIGR03375 496 vaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadl 539
                 va  G  GsGKst+lk++l  ++p+ Gsv++    +r +d   l
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDAL 45 
                 8999*************************998877777776655 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00066
   TIGR03375 621 dppillLDE..PtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGriva 681
                 d p ll+DE     +lD +  ++ + r + +  + T++ +tH   l +++d ++ ++ Gr++ 
  MMETSP1174-20130828|5069_1 126 DSPFLLFDElfDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLIQ 188
                 5677888884446778888888877777777779**************************996 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05    0.0014      30      76 ..       1      47 [.       1      76 [. 0.82
   2 !   10.7   0.0   0.00062     0.056     174     227 ..     139     189 ..     125     199 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-05
   TIGR02315 30 lvaviGlsGaGkstllr.sinrlveissgsillegkevtklkkkelrk 76
                +va  GlsG+Gkst+l+ ++++l +++ gs++++ + v+ l + +l +
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKiCLSKL-TPQGGSVQMRSSLVRFLDNDALDE 47
                68999***********9556666.789999999888877766666655 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00062
   TIGR02315 174 asLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfd 227
                  sLD +  +q  ++l++ + e gitvi   H++ la+  ad +v ++ g+++  
  MMETSP1174-20130828|5069_1 139 CSLDYQVGTQ--RVLRTACMELGITVIHATHSLRLAR-MADLVVFMNGGRLIQC 189
                 4677666555..6799*******************97.6999999999998755 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.011      0.97      15      40 ..       2      27 ..       1      65 [. 0.66
   2 !   19.2   0.0   1.5e-06   0.00014     143     212 ..     126     194 ..     120     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.011
   TIGR02770 15 lalvGesGsGksltalailglldkel 40
                +a+ G sGsGks++ +  l  l ++ 
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQG 27
                7899********98777766665543 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.5e-06
   TIGR02770 143 eaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvke 212
                 ++p+l+ De   +  ++ q+   + l++   + g++++  th l+ +a++ad v+ m+ G+++ +++++e
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLR-LARMADLVVFMNGGRLIQCVPPEE 194
                 689******9999999999999999*******************9.7*****************998775 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.5e-06   0.00087      31      68 ..       1      38 [.       1      58 [. 0.87
   2 !    8.6   0.0    0.0032      0.29     158     215 ..     128     185 ..     119     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 9.5e-06
   TIGR00960 31 lvflvGhsGaGkstllklilgiekpsaGkirvsgqdlt 68
                +v ++G sG+Gkst+lk+ l+  +p+ G +++    + 
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVR 38
                67789*************************98776554 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0032
   TIGR00960 158 allladePtgnlddelsrdilellee.vnraGttvlvathdenlveskrkrvltlskGk 215
                 + ll de   n   ++  +  ++l++   ++G+tv+ ath   l  ++   v+ ++ G+
  MMETSP1174-20130828|5069_1 128 PFLLFDELFDNCSLDYQVGTQRVLRTaCMELGITVIHATHSLRLA-RMADLVVFMNGGR 185
                 5788999999999999999999998725799*********99875.4555566666665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00016     0.015      34      70 ..       2      38 ..       1      76 [. 0.84
   2 !   12.7   0.0   0.00017     0.015     169     219 ..     138     186 ..     117     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 0.00016
   TIGR02982 34 viltGpsGsGkttlltligglrsvqeGelkvlgkelk 70
                v +tG sGsGk t+l +  +  + q G++++ ++ ++
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVR 38
                789**************99999******998766554 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00017
   TIGR02982 169 taaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  ++ld + g +   +l++   e g t++  th  r+  +ad +v m+ G+l
  MMETSP1174-20130828|5069_1 138 NCSLDYQVGTQ--RVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRL 186
                 56889988887..469999******************************97 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.5e-05    0.0041      22      74 ..       2      56 ..       1      85 [. 0.83
   2 !   10.6   0.0    0.0005     0.046     147     216 ..     126     194 ..     113     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.5e-05
   TIGR01186 22 iviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelre..vrrkkia 74
                + + GlsGsGkst++++    + P  G + +    +  ++++ l e  vr +k +
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDEsnVRIQKAG 56
                6799*************99999*******99999998888888865336666665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0005
   TIGR01186 147 ePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPde 216
                 + + ll de f       +   q  l     +l  t++  th l  a r++d +v ++ G ++q   P+e
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 67889999999765555666778999999999************877.9****************99998 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.4     4e-08   3.7e-06     350     527 ..       1     179 [.       1     181 [. 0.69

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4e-08
   TIGR02857 350 lvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseae..vkealeragldelvkalpqgleteiGergagL...SgGqrqRlaLArallrdapllllDE..PtahLDaeteaevlealrelaegrtvllvaHrlalaeladkiv 527
                 +va +G SG+GKst+lk+ l  ++p++G++++ ++ ++ ld+d++ ++     Qk+  +++++a  + l +++ ++ +  v  a+++a  ++l ++ +  l+     ++  L   SgGq+  +       +d+p ll+DE     +LD +   + + + +++  g tv+ ++H+l la+ ad +v
  MMETSP1174-20130828|5069_1   1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDESNVR-IQKAGSYAKALAS-LSLEESQIQKLAslVGVAARDAPWQSLSDDSRLTLALCFSVAACFLpveSGGQATTIK----DGSDSPFLLFDElfDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLARMADLVV 179
                 5899****************************9996666666666555444.4666667766654.4444444443332377778888888888887777777777777776666778876553....346668888888444567777766666666666667788888888888888888777 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00069     0.062      28      60 ..       1      33 [.       1      50 [. 0.86
   2 !   12.9   0.0   0.00014     0.012     151     217 ..     129     194 ..     114     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00069
   TIGR00968 28 lvallGpsGsGkstllrviaGlekpdsGrille 60
                +va+ G sGsGkst+l++      p+ G + ++
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMR 33
                799**************9988888888887765 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00014
   TIGR00968 151 vllldepfg..aldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaee 217
                  ll+de f   +ld +v    ++ lr    e+ +t +  th    a  +ad +v ++ G+++q   +ee
  MMETSP1174-20130828|5069_1 129 FLLFDELFDncSLDYQVG--TQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 6999**997225666665..5689*****************99877.69**************987776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00037     0.034      27      58 ..       2      33 ..       1      42 [. 0.91
   2 !   11.8   0.0   0.00033      0.03     146     208 ..     126     187 ..      59     190 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00037
   TIGR01277 27 vailGesGaGkstllnliaGflepasGeikvn 58
                va  G sG+Gkst+l++    l+p  G++++ 
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMR 33
                899************************99875 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00033
   TIGR01277 146 ekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                 + p ll+de f       ++    ++++ + e  +t++  thsl  +a++a+ vv+++ G++ 
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLR-LARMADLVVFMNGGRLI 187
                 78*********988888888888999*****************96.7789********99975 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.5e-05    0.0022      31      75 ..       3      48 ..       1      59 [. 0.76
   2 !    7.9   0.1    0.0046      0.42     180     218 ..     150     188 ..     137     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.5e-05
   TIGR02323 31 givGesGsGkstllkalaarlladaGevtyesrsr.elellalsea 75
                +  G sGsGkst+lk   ++l+++ G+v+ +s    +l+  al e+
  MMETSP1174-20130828|5069_1  3 AFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVrFLDNDALDES 48
                67899**********99999********987643325555555555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0046
   TIGR02323 180 llrglvrelglaviivth.lavarllaqrllvmkqGrvve 218
                 +lr+   elg++vi  th l +ar+ a+ ++ m+ Gr+++
  MMETSP1174-20130828|5069_1 150 VLRTACMELGITVIHATHsLRLARM-ADLVVFMNGGRLIQ 188
                 6899999***********9999996.77999999999885 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07     2e-05     503     688 ..       2     188 ..       1     196 [. 0.76

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.2e-07
   TIGR01193 503 itlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtel....seeassi...sgGqkqrlalarallsdskvlildes..tsnldl.ltekkiven.llklkdktiifvahrlsvakksdkiivldeGkiie 688
                 ++  GlsGsGkst+ k+ +    ++ G +++ +  ++ +d+ +l ++   + q+    +Gs  + l   + e+ +++++   v +a  ++  + l+      l    s+ a  +   sgGq   +       sds  l++de     +ld  +  ++++    ++l   t+i  +h l +a+++d ++ ++ G++i+
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDESNVRI-QK----AGSYAKALASLSLEESQIQKLASLVGVAARDAPWQSLSDDSRLTLalcfSVAACFLpveSGGQATTIKD----GSDSPFLLFDELfdNCSLDYqVGTQRVLRTaCMEL-GITVIHATHSLRLARMADLVVFMNGGRLIQ 188
                 5788****************************************9985554.44....677777777778888889999999999988877777665444333111144444443347777665543....59*********722456886355677776514556.99************************9985 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015       1.4      32      63 ..       1      32 [.       1      46 [. 0.80
   2 !   15.8   0.0   1.4e-05    0.0013     156     221 ..     130     194 ..     114     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.015
   TIGR03265 32 lvclLGPsGCGkttLLriiaGLekqdaGaill 63
                +v++ G sG Gk+t+L+i     +++ G++ +
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQM 32
                799**************976666666777665 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.4e-05
   TIGR03265 156 LLLDePls..aLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPee 221
                 LL+De +   +LD +v    ++ l++   +lg+t i  th    a  +aD +v mn g++ q+  Pee
  MMETSP1174-20130828|5069_1 130 LLFDELFDncSLDYQV--GTQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 5666666411344444..445678888899**********99877.7****************99987 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0016      0.14      55      82 ..       4      31 ..       1      75 [. 0.75
   2 !   12.1   0.0   0.00016     0.015     182     251 ..     126     194 ..     118     200 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0016
   TIGR03415 55 lmGlsGsGkssllr.avnglnpvsrGkvl 82
                + GlsGsGks++l+ ++ +l p   G+v+
  MMETSP1174-20130828|5069_1  4 FTGLSGSGKSTVLKiCLSKLTP-QGGSVQ 31
                67***********933445544.445555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00016
   TIGR03415 182 eadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpee 251
                 +++ ll de f       +   q  l +   +l  t++  +h l  a ++ + +  m+gGr++q+  pee
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 88999999999765555556667888889999************987.99***************99998 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00084     0.077      26      58 ..       2      34 ..       1      54 [. 0.86
   2 !   10.9   0.0   0.00046     0.042     161     217 ..     140     193 ..     125     202 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00084
   TIGR02142 26 talFGrsGsGktslirliaGLtrpdegeivldg 58
                +a  G sGsGk++++++    ++p+ g +++  
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRS 34
                7889************99888899999998765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00046
   TIGR02142 161 aLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkle 217
                 +LD +  ++    L+    el i +++  Hsl  +ar+ad vv ++ Gr+    ++e
  MMETSP1174-20130828|5069_1 140 SLDYQVGTQ--RVLRTACMELGITVIHATHSLR-LARMADLVVFMNGGRLIQCVPPE 193
                 555554444..347888899***********96.9**************97766655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05   0.00098     369     414 ..       2      47 ..       1      64 [. 0.89
   2 ?    4.6   0.0     0.025       2.3     494     554 ..     126     188 ..     113     194 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.1e-05
   TIGR02204 369 valvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelre 414
                 va+ G sG+Gkst+l++ l    Pq G++++    +r ld + l e
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDE 47 
                 99*****************************999999888877755 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.025
   TIGR02204 494 dapiLLLdeatsaLdaeseqlvqqaleel.mkgrttlv.iahrLatvlkadrivvldkGrive 554
                 d+p LL+de       + +   q+ l ++ m+   t++   h L   + ad +v ++ Gr+++
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELFDNCSLDYQVGTQRVLRTAcMELGITVIhATHSLRLARMADLVVFMNGGRLIQ 188
                 8899999998765555555556677765414444555515699*****************986 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-05    0.0015     508     553 ..       2      47 ..       1      87 [. 0.88
   2 ?    5.1   0.0     0.013       1.1     644     691 ..     139     188 ..     114     196 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.6e-05
   TIGR03796 508 vAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlan 553
                 vA+ G sGsGkst+ k+     +p  G++ + +   + + +++l +
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDE 47 
                 9*****************9999******999877776666666655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.013
   TIGR03796 644 saLDae..tEkaidenlrrRgctciivaHRLstiRdcdeiivlerGkvve 691
                  +LD +  t + +  +  + g+t+i  +H L   R +d ++ ++ G++++
  MMETSP1174-20130828|5069_1 139 CSLDYQvgTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLIQ 188
                 45665422677888889999***************************998 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   7.4e-05    0.0067      26      58 ..       1      33 [.       1      51 [. 0.80
   2 ?    6.0   0.0     0.017       1.6     179     205 ..     154     180 ..     125     181 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.4e-05
   TIGR03608 26 lvaivGesGsGKstlLnilgllekkdsgkvile 58
                +va +G sGsGKst+L i     +++ g+v + 
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMR 33
                79***************9766666667777665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.017
   TIGR03608 179 elkeegktiiivtHdpevaekadrvie 205
                    e g t+i +tH+  +a++ad v+ 
  MMETSP1174-20130828|5069_1 154 ACMELGITVIHATHSLRLARMADLVVF 180
                 4567899****************9997 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00076     0.069      30      72 ..       2      46 ..       1      55 [. 0.75
   2 !    9.6   0.0    0.0013      0.12     180     228 ..     147     193 ..     126     207 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00076
   TIGR00972 30 taliGpsGcGkstllr.slnrlndlveevrieGk.vllegkdiyd 72
                +a+ G sG+Gkst+l+ +l +l+ +  +v+++ + v + ++d  d
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKiCLSKLTPQGGSVQMRSSlVRFLDNDALD 46
                7999***********977999988887777765524466666555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0013
   TIGR00972 180 tekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegete 228
                 t+++  + + ++  +t++  th++  a r++d ++f+  G+l+   ++e
  MMETSP1174-20130828|5069_1 147 TQRVLRT-ACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPE 193
                 5555443.2344568*********986.89************9877655 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00011    0.0099     347     390 ..       2      45 ..       1      52 [. 0.89
   2 !    5.8   0.0    0.0094      0.86     476     532 ..     130     187 ..     125     194 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
   TIGR01842 347 laiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretl 390
                 +a  G sgsGks++ ++ +   +p+ Gsv++ +  ++  d++ l
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDAL 45 
                 7899***************************9988888888776 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0094
   TIGR01842 476 vvLDe..PnanLD.eeGeqala.kalkelkarkitvvvithrpsllelvdkilvlkdGalk 532
                 ++ De   n +LD + G q ++ +a +   + +itv+  th  +l +++d ++ ++ G+l 
  MMETSP1174-20130828|5069_1 130 LLFDElfDNCSLDyQVGTQRVLrTACM---ELGITVIHATHSLRLARMADLVVFMNGGRLI 187
                 556664457888844476654404444...559*************************975 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   3.5e-06   0.00032      30     211 ..       2     187 ..       1     195 [. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.5e-06
   TIGR03864  30 vaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlD....ldlsve.qnlryhaaLhGlsraeaeerieealarlglaeraeekvreL...nGGhrrrveiarallhePklLLlDea..tvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvl 211
                 va  G+ G+Gkst++++    ++ + g++++  + +r   ++al +  v  q+          ls+e   ++  a+L G++ ++a  +  +  +rl la   +  +  L   +GG+      ++    +P  LL+De      LD +     ++ +r+ + e g++v+ ath +   + +d +v ++ G++ 
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDESNVRIQKAGSYakalASLSLEeSQIQKLASLVGVAARDAPWQSLSDDSRLTLALCFSVAACFLpveSGGQATT---IKDGSDSP-FLLFDELfdNCSLDYQ--VGTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLI 187
                 67889***********998889999************************9998643311114577752578999***********9999999999999988777776663336776654...56777777.6788996114555555..5567889*********************************986 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   5.1e-05    0.0046      34      75 ..       2      43 ..       1      59 [. 0.79
   2 ?    4.4   0.0     0.056       5.1     186     220 ..     153     187 ..     128     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.1e-05
   TIGR02211 34 vaivGssGsGkstllhllggldkptsGevllkGkelsklssn 75
                va +G sGsGkst+l +  +  +p  G+v+++   ++ l ++
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDND 43
                7899************9888889*******999888777655 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.056
   TIGR02211 186 elnkekntallvvthdlelakkldrvlelkdgkla 220
                     e++++++ +th l+la+ +d v+ ++ g+l 
  MMETSP1174-20130828|5069_1 153 TACMELGITVIHATHSLRLARMADLVVFMNGGRLI 187
                 5556889999********************99986 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0004     0.037     510     543 ..       2      35 ..       1      54 [. 0.83
   2 !    6.9   0.0    0.0038      0.35     647     693 ..     140     188 ..     127     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0004
   TIGR00958 510 valVGPsGsGKStvaallenlYqPtgGqvllDgk 543
                 va  G sGsGKStv  +      P+gG+v +   
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSS 35 
                 8999*************99999******987655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0038
   TIGR00958 647 ALDa..eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvve 693
                  LD    ++++l +   + + tv+  +h L +++ ad +++++ g++ +
  MMETSP1174-20130828|5069_1 140 SLDYqvGTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLIQ 188
                 56662245788888888999*************************9987 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-06   0.00027      37      69 ..       2      34 ..       1      65 [. 0.86

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-06
   TIGR02324 37 valsGksGaGkstllkslyanYlpesgrilvrh 69
                va++G sG+Gkst+lk   ++  p++g++++r 
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRS 34
                8999*************************9986 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0004     0.036     486     525 ..       2      41 ..       1      69 [. 0.83
   2 !    5.8   0.0    0.0079      0.72     613     670 ..     128     187 ..     114     198 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0004
   TIGR01846 486 iGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlalad 525
                 +  +G sGsGkst+ k+     +P+ G v +    +  +d
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLD 41 
                 5679*************99999*****9977665555555 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0079
   TIGR01846 613 rilildea..tsaldyeseavimrnlreick..grtviiiahrlstvraadrilvlekGkiv 670
                   l++de     +ldy+  +  +r lr  c   g tvi  +h l   r ad ++ ++ G+++
  MMETSP1174-20130828|5069_1 128 PFLLFDELfdNCSLDYQVGT--QRVLRTACMelGITVIHATHSLRLARMADLVVFMNGGRLI 187
                 56899996224678887665..5566665542389************************987 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00055      0.05      31      61 ..       4      34 ..       1     102 [. 0.83
   2 ?    4.9   0.0     0.043       3.9     161     203 ..     146     187 ..     125     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00055
   TIGR03740 31 llGpnGaGkstllklltGllrktsGeilldg 61
                + G  G+Gkst+lk+    l+++ G++ + +
  MMETSP1174-20130828|5069_1  4 FTGLSGSGKSTVLKICLSKLTPQGGSVQMRS 34
                67999********************998865 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.043
   TIGR03740 161 qelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                    r l ++  e Gitvi ++h l  +  +ad + +++ G+l 
  MMETSP1174-20130828|5069_1 146 GTQRVLRTACMELGITVIHATHSLR-LARMADLVVFMNGGRLI 187
                 4456677788899*********995.7899*******999985 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.9e-06   0.00054     364     406 ..       2      44 ..       1      55 [. 0.86

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.9e-06
   TIGR02868 364 vavvGasGaGKstLlallaglldplkGevtldgvsvaslsese 406
                 va +G sG+GKst+l++ +  l p+ G+v + +  v  l++++
  MMETSP1174-20130828|5069_1   2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDA 44 
                 7899*************************99987666666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-05     0.001      31      64 ..       2      35 ..       1      55 [. 0.90
   2 ?   -2.5   0.1       6.3   5.8e+02     184     211 ..     161     187 ..     150     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-05
   TIGR03522 31 vGflGPnGaGkstlmkiltgylkadsGsvavage 64
                v f G  G+Gkst++ki  + l++++Gsv++  +
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSS 35
                7899*************************98765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 6.3
   TIGR03522 184 tvilsthimqevealcdrviiinkGkiv 211
                 tvi +th ++ +  + d v+ +n G+++
  MMETSP1174-20130828|5069_1 161 TVIHATHSLR-LARMADLVVFMNGGRLI 187
                 8999999886.56799999999999986 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.8e-05    0.0053      21      58 ..       2      39 ..       1      55 [. 0.83
   2 ?    0.9   0.0      0.65        60     162     190 .]     146     172 ..     126     172 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.8e-05
   TIGR01166 21 lallGanGaGkstlllhlnGllrPksGkvlldGeeldy 58
                +a+ G  G+Gkst+l+     l P+ G v +  + + +
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRF 39
                68899************************998877766 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.65
   TIGR01166 162 GaeqlleilrklreeGktvvisthdvdla 190
                 G++++l++     e G tv+ +th + la
  MMETSP1174-20130828|5069_1 146 GTQRVLRT--ACMELGITVIHATHSLRLA 172
                 44444433..45788*********98886 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   8.8e-05    0.0081     361     547 ..       1     187 [.       1     194 [. 0.65

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.8e-05
   TIGR02203 361 vvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskL...sGGqRqRlaiaRallkdaPiLiLDea..tsaLDne..seRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiv 547
                 +va+ G sGsGkst++++    + p+ G++ +    ++ l  + L +      q+   +  ++a      ++ +     v  a+++a  ++l d++   l       +  L   sGGq   +        d+P L+ De     +LD      R +  a  +l  g t +   h L   + aD +v ++ G+++
  MMETSP1174-20130828|5069_1   1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVRFLDNDALDESNVR-IQKAGSYAKALASLSLEESQIQKLASLVGVAARDAPWQSLSDDSRLTLALCFSVAACFLpveSGGQATTIKD----GSDSPFLLFDELfdNCSLDYQvgTQRVLRTACMEL--GITVIHATHSLRLARMADLVVFMNGGRLI 187
                 69****************999999****99998888887777777654333.466666666666533333333444556777788888888888777777777777777666667887654433....35788888888611344554311233333333222..44555556888888888888888888877 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.7e-05    0.0052     489     549 ..     126     188 ..       1     203 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.7e-05
   TIGR01192 489 napilvldea..tsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrlie 549
                 ++p l++de     +ld +   +      +++   t +  +h l   r adlv+f++ grli+
  MMETSP1174-20130828|5069_1 126 DSPFLLFDELfdNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLARMADLVVFMNGGRLIQ 188
                 56888888861134555544433333345777778888889********************97 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015       1.4       9      41 ..       2      34 ..       1      40 [. 0.89
   2 ?    7.0   0.0      0.01      0.94     134     207 ..     129     202 ..     117     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.015
   TIGR03771  9 lgllGpnGaGkttllrailglikvakGsvkvag 41
                +++ G  G+Gk+t+l+  l+ ++++ Gsv++ +
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRS 34
                788999**************9999****99876 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.01
   TIGR03771 134 lllldepftGldlpsqellvelfe.elagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqdaalwke 207
                  ll+de f    l  q     +++ +  + g +++ +th l  a  ++d vv++ng  + + +p +      wk+
  MMETSP1174-20130828|5069_1 129 FLLFDELFDNCSLDYQVGTQRVLRtACMELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEESTFLKWKT 202
                 68999999776665555555555404455699*********987.6789******98888888877666666665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0046      0.42      22      52 ..       2      32 ..       1      55 [. 0.92
   2 ?    4.5   0.0     0.041       3.8     171     210 ..     156     194 ..     136     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0046
   TIGR01188 22 fglLGPnGAGKtttikmLttllkPdsGtarv 52
                +++ G  G GK+t++k+  + l+P++G++++
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQM 32
                5788999********************9865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.041
   TIGR01188 171 kkegvtilltthyleeadkladrvaiidkGkiiaedtpee 210
                  + g+t++ +th l  a ++ad v  ++ G++i    pee
  MMETSP1174-20130828|5069_1 156 MELGITVIHATHSLRLA-RMADLVVFMNGGRLIQCVPPEE 194
                 4569**********977.68*************8766665 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00011    0.0098      22      50 ..       3      31 ..       1      64 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00011
   TIGR00455 22 WltGlsgsGkstianalekkLeekglrve 50
                 +tGlsgsGkst+ +    kL+ +g +v+
  MMETSP1174-20130828|5069_1  3 AFTGLSGSGKSTVLKICLSKLTPQGGSVQ 31
                69*************99999999887765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00099      0.09      29      65 ..       2      38 ..       1      77 [. 0.88
   2 ?    1.7   0.0      0.36        33     171     212 ..     148     188 ..     129     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00099
   TIGR03410 29 vavlGrngvGkttllkalvgllkvksGeielegedit 65
                va  G  g Gk+t+lk  ++ l+ + G+++++++ ++
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSSLVR 38
                6788999***********************9887665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.36
   TIGR03410 171 ekvikelakekdlaillveqvldfaleladrylvlerGevva 212
                 ++v+++   e +++++   ++l +a+  ad ++ ++ G++++
  MMETSP1174-20130828|5069_1 148 QRVLRTACMELGITVIHATHSLRLARM-ADLVVFMNGGRLIQ 188
                 67888888899999**99*****9975.9*********9986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0018      0.17      37      67 ..       2      32 ..       1      41 [. 0.88
   2 ?    1.7   0.0      0.25        23     191     221 ..     160     189 ..     127     195 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0018
   TIGR03258 37 lallGksGsGkttllravaGfvkadGGrllv 67
                +a  G sGsGk+t+l++    + ++GG + +
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQM 32
                6889***********************9876 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.25
   TIGR03258 191 ltvlyvthdrdealvladkillmkeGslial 221
                 +tv+  th    a  +ad + +m+ G+li+ 
  MMETSP1174-20130828|5069_1 160 ITVIHATHSLRLA-RMADLVVFMNGGRLIQC 189
                 6889999987766.589***********996 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0042      0.38      14      46 ..       2      34 ..       1      45 [. 0.87
   2 ?    2.9   0.0      0.16        15     136     191 ..     130     184 ..     120     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0042
   TIGR01184 14 islighsgcgkstllnliaglekptsgavileg 46
                +++ g sg gkst+l +      p  g+v++  
  MMETSP1174-20130828|5069_1  2 VAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRS 34
                67889************999999******9976 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.16
   TIGR01184 136 llldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltng 191
                 ll+de f       +   q  l   + e  +tv+  th +  a  ++d vv++  g
  MMETSP1174-20130828|5069_1 130 LLFDELFDNCSLDYQVGTQRVLRTACMELGITVIHATHSLRLAR-MADLVVFMNGG 184
                 77788887766666777788888999*************99886.68999988766 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00042     0.039      28      62 ..       1      35 [.       1      91 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00042
   TIGR01189 28 alvveGpnGiGKttLLRilaGLlkpesGevelndk 62
                +++ +G  G+GK+t+L+i    l+p+ G+v++ ++
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKICLSKLTPQGGSVQMRSS 35
                57889*************99999********9865 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1     0.002      0.19      53      80 ..       1      29 [.       1      62 [. 0.69
   2 ?    0.2   0.0      0.48        44     207     248 ..     149     189 ..     125     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.002
   TIGR00955 53 llAvlGsSGaGKtTLlna.lafrsekglk 80
                ++A  G SG+GK+T l++ l++ +++g +
  MMETSP1174-20130828|5069_1  1 MVAFTGLSGSGKSTVLKIcLSKLTPQGGS 29
                7999************9835555555543 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.48
   TIGR00955 207 kvLkklaqk.gktviltiHQPsselfelfdkiillaeGrvvyl 248
                 +vL+  +++ g tvi   H  s +l ++ d +++++ Gr +  
  MMETSP1174-20130828|5069_1 149 RVLRTACMElGITVIHATH--SLRLARMADLVVFMNGGRLIQC 189
                 4566666542555555555..889**************99855 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0039      0.36     315     344 ..       4      33 ..       1      70 [. 0.81
   2 ?    0.8   0.0      0.33        30     470     514 ..     151     194 ..     135     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0039
   TIGR03269 315 lvGtsGaGkttlskilaGvleptsGevevr 344
                   G+sG+Gk+t+ ki +  l p  G v++r
  MMETSP1174-20130828|5069_1   4 FTGLSGSGKSTVLKICLSKLTPQGGSVQMR 33 
                 579***********************9987 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.33
   TIGR03269 470 ilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpee 514
                 +  a  el+ t +  +h + + + + d + +m  G++++  +pee
  MMETSP1174-20130828|5069_1 151 LRTACMELGITVIHATHSLRLAR-MADLVVFMNGGRLIQCVPPEE 194
                 44566778888888888887654.578888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      245  (0.059727); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        45  (0.0109703); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 546.07
//
Query:       MMETSP1174-20130828|5074_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.6   0.0      0.023   11.4   0.0    1.1  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-06     0.023       1      38 [.      43      78 ..      43      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-06
   TIGR03417  1 trpnililmvdqlagtllpaygpaevlkaPnlkrlaar 38
                tr+n+l+lm+d l ++l  a g+ + + +P +++la  
  MMETSP1174-20130828|5074_1 43 TRKNVLLLMADDLRPQLGYA-GR-NSVLTPYIDALART 78
                689************99766.66.8899*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|5073_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|5068_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 808.43
//
Query:       MMETSP1174-20130828|5075_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|5080_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 779.16
//
Query:       MMETSP1174-20130828|5088_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   25.8   0.3    1.1e-06   25.8   0.2    1.0  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    9.3e-05   19.5   0.1    9.8e-05   19.4   0.1    1.2  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    9.8e-05   19.0   0.1     0.0001   19.0   0.1    1.1  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    0.00026   17.9   1.7       0.02   11.7   0.6    2.0  2  TIGR00692 tdh: L-threonine 3-dehydrogenase
    0.00037   17.2   0.3    0.00041   17.1   0.2    1.1  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
     0.0016   15.5   0.3     0.0017   15.5   0.2    1.1  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
     0.0052   14.1   0.2     0.0053   14.0   0.1    1.1  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
      0.007   13.7   0.0     0.0077   13.6   0.0    1.1  1  TIGR03119 one_C_fhcD: formylmethanofuran--tetrahydromethanopterin N-formyltransferase


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2   2.1e-09   1.1e-06      60     115 ..      26      79 ..       9      82 .] 0.89

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.1e-09
   TIGR02824  60 ilGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslv 115
                  lG E  G+v+a+ge+v+++ vGd vc    g g+aey++ +a+ + +vp+  s +
  MMETSP1174-20130828|5088_1  26 ALGAEGVGVVAAIGEGVDNVDVGDAVCF--VGSGFAEYTKSKAQMLWKVPQPTSEM 79 
                 589999*********************5..6999****************987755 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.9e-07   9.8e-05      57      84 ..      25      52 ..      11      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.9e-07
   TIGR02818 57 vilghegagiveavgegvtslkvgdhvi 84
                  lg eg g+v a+gegv +++vgd v 
  MMETSP1174-20130828|5088_1 25 FALGAEGVGVVAAIGEGVDNVDVGDAVC 52
                579**********************996 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     2e-07    0.0001      73     111 ..      19      57 ..       5      74 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2e-07
   TIGR01751  73 kddepfhiiGsdasGvvlrvGegvkrvkvGDevvvsclq 111
                 +++ +    G+++ Gvv ++Gegv +v+vGD v   ++ 
  MMETSP1174-20130828|5088_1  19 REAADGFALGAEGVGVVAAIGEGVDNVDVGDAVCFVGSG 57 
                 4455666789***********************876654 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.6     4e-05      0.02      57      84 ..      25      52 ..      12      55 .. 0.88
   2 !    5.7   0.0    0.0027       1.4     118     139 ..      57      78 ..      53      82 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   TIGR00692 57 qvlGhevaGevvgiGeevegvkvGdyvs 84
                  lG e +G+v  iGe+v++v+vGd v 
  MMETSP1174-20130828|5088_1 25 FALGAEGVGVVAAIGEGVDNVDVGDAVC 52
                56899********************996 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0027
   TIGR00692 118 vfaeyvvvpadnifknpkdidp 139
                  faey +  a+ ++k+p+  ++
  MMETSP1174-20130828|5088_1  57 GFAEYTKSKAQMLWKVPQPTSE 78 
                 59***************97664 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   7.9e-07   0.00041      56      83 ..      25      52 ..      15      66 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.9e-07
   TIGR03451 56 fllgheaagvveavgegvtdvepgdyvv 83
                f lg e  gvv a+gegv++v++gd v 
  MMETSP1174-20130828|5088_1 25 FALGAEGVGVVAAIGEGVDNVDVGDAVC 52
                88***********************996 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   3.4e-06    0.0017      60      85 ..      28      53 ..      16      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.4e-06
   TIGR03989 60 GheGaGvvekvGpgvtelkeGdhvvl 85
                G eG Gvv ++G+gv +++ Gd v +
  MMETSP1174-20130828|5088_1 28 GAEGVGVVAAIGEGVDNVDVGDAVCF 53
                89********************9975 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     1e-05    0.0053      60      92 ..      25      57 ..      14      79 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1e-05
   TIGR02817 60 kilGwdaaGvvkavGeevtlfkvGdevfyaGal 92
                  lG + +Gvv a+Ge v+   vGd v + G+ 
  MMETSP1174-20130828|5088_1 25 FALGAEGVGVVAAIGEGVDNVDVGDAVCFVGSG 57
                56999************************9974 PP

>> TIGR03119  one_C_fhcD: formylmethanofuran--tetrahydromethanopterin N-formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.5e-05    0.0077      91     137 ..      28      73 ..      18      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-05
   TIGR03119  91 tapttavfnglpeaeeekikvGkklryfgdGyqkekelegkrlwriP 137
                  a +  v +++ e+  ++++vG ++ + g G+++ ++ + + lw++P
  MMETSP1174-20130828|5088_1  28 GAEGVGVVAAIGEGV-DNVDVGDAVCFVGSGFAEYTKSKAQMLWKVP 73 
                 566677888999985.9*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 432.92
//
Query:       MMETSP1174-20130828|5087_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1174-20130828|5084_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1458.83
//
Query:       MMETSP1174-20130828|5081_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|5096_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 267.98
//
Query:       MMETSP1174-20130828|5098_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|5092_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 2001.43
//
Query:       MMETSP1174-20130828|5102_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 866.39
//
Query:       MMETSP1174-20130828|5100_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|5105_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1280.29
//
Query:       MMETSP1174-20130828|5106_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-08   30.6   0.0      7e-08   30.2   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
     0.0001   20.4   0.0    0.00016   19.7   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0024   15.9   0.0     0.0037   15.3   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   5.1e-11     7e-08      53     112 ..     151     212 ..     137     226 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 5.1e-11
   TIGR01130  53 kvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsg..Pas 112
                 ++  +k  + + ++l  +y+v+ +P L +fr+g  +s+Y+G R++++++ yl +q++  Pas
  MMETSP1174-20130828|5106_1 151 RIRFVKGEGSAFTSLVAQYSVRAFPRLLLFRDGLLISKYHGSRNTAELTAYLANQTNalPAS 212
                 566666677777899*************************************9997422665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-07   0.00016      50     104 ..     152     205 ..     133     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.2e-07
   TIGR01126  50 vkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                 +   k +  a ++l ++++v++fP l +f++g    ++y+G+R+++el+++++++
  MMETSP1174-20130828|5106_1 152 IRFVKGEGSAFTSLVAQYSVRAFPRLLLFRDGLL-ISKYHGSRNTAELTAYLANQ 205
                 5555666667788999****************96.9***************9876 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-06    0.0037      46      99 ..     151     204 ..     136     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.7e-06
   TIGR01068  46 kvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                 ++++vK +  + +++ a+y++r+ P lllf++g  +++  G  + a+l+  +++
  MMETSP1174-20130828|5106_1 151 RIRFVKGEGSAFTSLVAQYSVRAFPRLLLFRDGLLISKYHGSRNTAELTAYLAN 204
                 6888888888899999******************************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 840.22
//
Query:       MMETSP1174-20130828|5112_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 573.21
//
Query:       MMETSP1174-20130828|5113_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|5115_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.0   0.6       0.02   12.3   0.4    1.3  1  TIGR02866 CoxB: cytochrome c oxidase, subunit II


Domain annotation for each model (and alignments):
>> TIGR02866  CoxB: cytochrome c oxidase, subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   4.9e-06      0.02      18     109 ..     184     281 ..     169     302 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.9e-06
   TIGR02866  18 avavliallvaalliyvvfkfrkksdeekpskisenrkleivwtvipviivvgliaatvaellkleksid.......kedalkvkvegvqfaWdfeYpe 109
                 +v v++ ll aa+++ ++ k    +  +  sk +en+    +w   + +i+ +l+++ +++++++   i+       +++ +k +  g ++ W++e   
  MMETSP1174-20130828|5115_1 184 LVIVVLLLLTAAFMVSFTVKSSG-ARAKMLSKDTENSIDMSSWDCHAFVIITSLLMVAAMGIVMVLFMIEissqsevERKRVKGQWDGGKYSWKVESYY 281
                 34444555555555555555553.555556666677777778888888888888888888877776666655555555667777788889999987433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1106.68
//
Query:       MMETSP1174-20130828|5114_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1367.03
//
Query:       MMETSP1174-20130828|5118_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 183.17
//
Query:       MMETSP1174-20130828|5120_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|5121_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 681.43
//
Query:       MMETSP1174-20130828|5122_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1174-20130828|5123_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 760.26
//
Query:       MMETSP1174-20130828|5128_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-05   18.9   0.0    0.00013   18.5   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.1e-08   0.00013     367     425 ..      16      74 ..       9      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.1e-08
   TIGR01982 367 isigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkl 425
                 +++ ++L+++++++ +f  e++p +l  +++l t+EG++ + dp++++++v+ p+  + 
  MMETSP1174-20130828|5128_1  16 LRFDAILTEILSLAPRFAFELPPYFLNNARALGTLEGMVISADPTFSVLQVVYPFALRR 74 
                 78999*************************************************97554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 914.82
//
Query:       MMETSP1174-20130828|5126_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 623.95
//
Query:       MMETSP1174-20130828|5127_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   10.5   1.2       0.17    8.6   0.1    1.9  2  TIGR01819 F420_cofD: LPPG:FO 2-phospho-L-lactate transferase


Domain annotation for each model (and alignments):
>> TIGR01819  F420_cofD: LPPG:FO 2-phospho-L-lactate transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   4.2e-05      0.17      54      85 ..      22      53 ..      14      59 .. 0.88
   2 ?    0.4   0.1     0.014        56     159     190 ..      84     115 ..      71     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 4.2e-05
   TIGR01819 54 lggvideerwwGikddtfhtkeelkelgvade 85
                 g+  +ee+w   + d++ tke+l elg++ e
  MMETSP1174-20130828|5127_1 22 TGEHFNEEKWNESNTDGSITKEKLSELGFKGE 53
                68999***********************9766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.014
   TIGR01819 159 krgevevedvefrgaekakaaeeaiealkdad 190
                 + +e ++ dv++   ++a +++e+ ea++ ++
  MMETSP1174-20130828|5127_1  84 EVSETPATDVAVAAPSEAAPSSEVSEAVSSEP 115
                 55788999*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|5132_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|5134_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-99  331.3   0.0    1.8e-99  330.9   0.0    1.1  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
    2.5e-05   22.4   0.0     0.0002   19.5   0.0    2.3  2  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.9   0.0  8.6e-103   1.8e-99       3     309 ..      66     380 ..      64     382 .. 0.94

  Alignments for each domain:
  == domain 1    score: 330.9 bits;  conditional E-value: 8.6e-103
   TIGR03167   3 kpliDvRspaEfaegalpgalnlpllndeeraevGtlYkqkgqeeAvklGlelvaeklkelleevqelaekeke..vllyCwRGGlRSkslawllkeaglevlrleGGYKayRrlvldeleelaqelklvvlgGnTGsgKtelLeklaeag.aqvldLEglAnhrGSafGalglee........qpsqkeFenalaeallrldeerplvvEdEsrkiGrvalpealieamkkaplvvveasleeRverlleeYealeedaekleealekirkrlgkerveklkelleageleelvealleeyYDplYakqlekkaerv 309
                 +++iDvR+p E+a++++pg++nlp+l+++er+e+Gt Y   +++ A+++G++lva++++ +le+  ++++k+    +l+yCwRGG RS+s+a +l+++g++v +leGGYKayR++v ++l++l+ ++++ +l+G TG+gKtelL++l+ +g +qvldLEglAnhrGS++Ga+++++        qpsqk Fe+ l++al++ld+++p+++E+Es+kiG+++lp+al++am  +p   v+ +l  Rv+r+++eY ++ +++++l++ l++++  ++k++++k+ +l+++++++e+v+ llee+YDp+Y ++++++++++
  MMETSP1174-20130828|5134_1  66 DEIIDVRAPCEYAQDHVPGSVNLPVLDNDERSEIGTKYAA-NHFDAKRRGAALVARNIAGHLET--HFTDKPGGyrPLVYCWRGGGRSNSMALVLAQVGWRVDLLEGGYKAYRAAVRSSLQTLPGTFRFKMLAGLTGTGKTELLKELELRGaCQVLDLEGLANHRGSLLGAVPETKgvtssmdtQPSQKMFESYLVKALSALDPSKPVWLEAESSKIGQLQLPQALWAAMLVSPRYQVSLPLPVRVRRIIKEYPYWIANPHELKALLRRLTSTHSKKTIDKWCDLVDSRAWDEVVTHLLEEHYDPAYVNSMSRHEKQH 380
                 78************************************98.9********************99..6777776666************************************************************************988469*****************9764322333333*******************************************************************************************************************************9998876 PP

>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.9e-08    0.0002      16      50 ..      63      97 ..      57     116 .. 0.84
   2 ?    0.1   0.0      0.11   2.2e+02      42      85 ..     118     164 ..      97     175 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 9.9e-08
   TIGR02981 16 yaaeywidvrvpeqyqrehvqgainiplkevkeri 50
                 aa+  idvr p +y ++hv g++n+p+ +  er 
  MMETSP1174-20130828|5134_1 63 AAADEIIDVRAPCEYAQDHVPGSVNLPVLDNDERS 97
                478999*********************98766654 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.11
   TIGR02981  42 plkevkerietvvpdkndtvk..lycnag.rqsgqakdillemgyth 85 
                   +++  ++et   dk    +  +yc  g  +s     +l+++g+  
  MMETSP1174-20130828|5134_1 118 VARNIAGHLETHFTDKPGGYRplVYCWRGgGRSNSMALVLAQVGWRV 164
                 45788889999999998776544899643134444445677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1263.32
//
Query:       MMETSP1174-20130828|5140_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|5141_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 492.42
//
Query:       MMETSP1174-20130828|5145_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 522.46
//
Query:       MMETSP1174-20130828|5146_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|5149_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.7   0.0      0.025   12.5   0.0    1.2  1  TIGR00589 ogt: methylated-DNA-[protein]-cysteine S-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00589  ogt: methylated-DNA-[protein]-cysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     6e-06     0.025      18      44 ..      24      50 ..      10      55 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6e-06
   TIGR00589 18 etvsYselakaigkpkavRavgsAlkr 44
                et+sY+ la+a+++ ka+  vg+ +++
  MMETSP1174-20130828|5149_1 24 ETMSYERLAEAVDEQKAADDVGADCEK 50
                89********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|5148_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1174-20130828|5152_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1042.02
//
Query:       MMETSP1174-20130828|5156_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 871.13
//
Query:       MMETSP1174-20130828|5158_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   33.6   0.0    2.7e-09   33.5   0.0    1.0  1  TIGR00484 EF-G: translation elongation factor G
    0.00015   18.1   0.0    0.00015   18.1   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA
     0.0085   12.0   0.0      0.009   11.9   0.0    1.0  1  TIGR00490 aEF-2: translation elongation factor aEF-2
  ------ inclusion threshold ------
      0.011   11.8   0.0      0.011   11.8   0.0    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.6e-12   2.7e-09     300     346 ..       7      53 ..       3      58 .] 0.90

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.6e-12
   TIGR00484 300 lkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrke 346
                 l+++ d+p+ alafkva+dp+ g l ++rvy G+l++ + + n+ + 
  MMETSP1174-20130828|5158_1   7 LRTDTDAPLCALAFKVAQDPHRGPLVYLRVYGGTLRRKQVLRNASRG 53 
                 67899*************************************98765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-07   0.00015     181     227 ..       6      52 ..       1      57 [. 0.86

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-07
   TIGR01393 181 aPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllst 227
                 + ++d++apl al f    d++rG +vy+rv+ G++++++ ++  s 
  MMETSP1174-20130828|5158_1   6 TLRTDTDAPLCALAFKVAQDPHRGPLVYLRVYGGTLRRKQVLRNASR 52 
                 3368999*******************************998876665 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.7e-06     0.009     282     320 ..       7      45 ..       4      56 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.7e-06
   TIGR00490 282 lncdpegplavvitkivvdkhagevavgrlysgaikkgs 320
                 l++d + pl ++  k+  d+h g +   r+y+g++++ +
  MMETSP1174-20130828|5158_1   7 LRTDTDAPLCALAFKVAQDPHRGPLVYLRVYGGTLRRKQ 45 
                 789*******************************99865 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05     0.011     194     238 ..       8      52 ..       1      58 [] 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
   TIGR01394 194 kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkk 238
                 ++d+d+pl +l  ++ +d + G ++  rv+ G++++ q ++ +++
  MMETSP1174-20130828|5158_1   8 RTDTDAPLCALAFKVAQDPHRGPLVYLRVYGGTLRRKQVLRNASR 52 
                 6799********************************998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.47
# Mc/sec: 162.88
//
Query:       MMETSP1174-20130828|5154_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.49
# Mc/sec: 1950.21
//
Query:       MMETSP1174-20130828|5168_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 828.35
//
Query:       MMETSP1174-20130828|5164_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-125  415.6   0.0   3.5e-125  415.4   0.0    1.0  1  TIGR03400 18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1
    5.9e-41  138.5   0.0    6.8e-41  138.3   0.0    1.0  1  TIGR03399 RNA_3prim_cycl: RNA 3'-phosphate cyclase
  ------ inclusion threshold ------
      0.025   12.4   0.1      0.069   11.0   0.1    1.7  1  TIGR03803 Gloeo_Verruco: gloeo_Verruco repeat


Domain annotation for each model (and alignments):
>> TIGR03400  18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.4   0.0  2.6e-128  3.5e-125      13     359 ..       1     344 [.       1     345 [] 0.98

  Alignments for each domain:
  == domain 1    score: 415.4 bits;  conditional E-value: 2.6e-128
   TIGR03400  13 lvlstLsgkpvkiskirsedenpGlrdyevsllrLlekvtngskieisetgttliykPGlitggslehecpaersigYyleplllLapFskkplkitlkG.iTnseedlsvDtirtavlpllkkfgieee.elelkilkRgaaplGgGevelkvpvlkqlktihlteegkvkrirGvaystrvspslanrmieaargvlnkllpdvyittdvrkgkesgkspGyglsLvaettkgvvisaeavssakegelpEdvGkeaakkLLeeiskgGcvdsaaqslvlllmalgkedvsklrlgklseetvellrdlkeffgvefklkedeeeeeskkvllsvvGigvvnvskki 359
                 l ls+L+++p++i++ir +de+pGl + e+s++rLl+k+tngs+iei++tgt l + PG+i+gg+l+h+c++ r+ g+++e +l L pF+k  l++tl+  iTn++ dlsvD+++ ++lpl++kfg+ +e +le k+  Rga p+GgG  e+++pv++ql++++++e g vkrirGvays++vsp++ nrm+++ r+v+nkl+pdvyi+tdv++gk+sg+spG+g++L aett+g+ +s ea++++   +lpEdv+ +a++ LLeei  +Gcvds++q+l+lllm +++e+v ++r+g+l+++t++++r +++ffgv f++++d   +e+k+vlls++G g++n sk++
  MMETSP1174-20130828|5164_1   1 LALSILASRPIRITSIRPDDESPGLTQSEASFIRLLDKLTNGSRIEINHTGTVLSFWPGIIVGGKLRHDCGTGRAAGWFIEGILPLVPFGKVALHLTLENcITNDDLDLSVDMLKEVTLPLFRKFGMGDEgTLEFKVRCRGALPKGGGVAEFQCPVVRQLRPVDILEAGLVKRIRGVAYSSKVSPQVPNRMVTQVREVFNKLIPDVYIYTDVYSGKTSGHSPGFGVTLWAETTEGIAVSFEAMADT--AALPEDVALRASHGLLEEIWDSGCVDSQHQPLALLLMCVSPEEVTRIRTGRLTQHTISTMRLIRDFFGVIFRVRTD---TETKTVLLSCLGYGYKNASKSV 344
                 679***********************************************************************************************877**************************876368****************************************************************************************************************9..***************************************************************************9...79******************97 PP

>> TIGR03399  RNA_3prim_cycl: RNA 3'-phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.0     5e-44   6.8e-41      19     325 ..       1     317 [.       1     318 [. 0.95

  Alignments for each domain:
  == domain 1    score: 138.3 bits;  conditional E-value: 5e-44
   TIGR03399  19 lsLsaltgkpvrienIRakRskpGLarQHLtavkavaelcnaeveGaelgSteleFePgkikggeyevdigtAgsvtLvlQtvlpalllaekesevkvkGG.TdvkaaPpvdylrevllplleklGv....kaelellrrGfyPkGgGevalevepvkklkeleleergelkkvkgialvanlpahvaerqakaaeellrkagldaeieiev...kekalgkGsgivltaete.klllgasalgkkgksaekvgeeaaeelleelesgaavdehlaDqlllylala.egessfktseltaHlktniavvekflkvkf 325
                 l+Ls+l ++p+ri+ IR   ++pGL++   + ++++ +l+n++    +   t l F Pg i gg+ + d gt  +    +  +lp++ + + + +++++   T+ ++  +vd l+ev+lpl +k+G+    ++e ++  rG  PkGgG ++++   v++l+++++ e g +k+++g+a+ +++  +v++r++ +++e+++k+++d+ i ++v   k+++ ++G g++l+aet+  + + ++a++      e v+ +a++ llee+  + +vd+  +   ll + ++ e+ ++++t +lt+H+ +++++++ f++v f
  MMETSP1174-20130828|5164_1   1 LALSILASRPIRITSIRPDDESPGLTQSEASFIRLLDKLTNGSRIEINHTGTVLSFWPGIIVGGKLRHDCGTGRAAGWFIEGILPLVPFGKVALHLTLENCiTNDDLDLSVDMLKEVTLPLFRKFGMgdegTLEFKVRCRGALPKGGGVAEFQCPVVRQLRPVDILEAGLVKRIRGVAYSSKVSPQVPNRMVTQVREVFNKLIPDVYIYTDVysgKTSGHSPGFGVTLWAETTeGIAVSFEAMADTAALPEDVALRASHGLLEEIWDSGCVDSQHQPLALLLMCVSpEEVTRIRTGRLTQHTISTMRLIRDFFGVIF 317
                 69***************************************99888888999**********************************************87549999********************955445789999*************************************************************************99999999************997999***********************************99999999999998356799********************99876 PP

>> TIGR03803  Gloeo_Verruco: gloeo_Verruco repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     5e-05     0.069      16      33 ..     313     331 ..     313     331 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5e-05
   TIGR03803  16 fGTiyrlspaGgf.tvLhs 33 
                 fG+i+r+ +++++ tvL s
  MMETSP1174-20130828|5164_1 313 FGVIFRVRTDTETkTVLLS 331
                 8***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1423.01
//
Query:       MMETSP1174-20130828|5162_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.3   2.3     0.0001   19.4   0.0    2.1  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.5   0.4     0.007        29     272     287 ..      49      64 ..      10      99 .. 0.65
   2 !   19.4   0.0   2.5e-08    0.0001     128     295 ..     158     318 ..     121     339 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.007
   TIGR00820 272 alsaGiLiYmaLvdll 287
                 +++aG+++Y++ v+++
  MMETSP1174-20130828|5162_1  49 GVAAGVMLYVSFVEIF 64 
                 3567777777777765 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.5e-08
   TIGR00820 128 gseeikvvdgeeeeaga.......dkhakesaedevkeeeeeeqllrqrvvaqvLelGiivHsvviGlslGas..qskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlskk 295
                  ++e +v       +         ++ + + ++ +  ee+++++l+r   + ++  l i +H    Gl+  ++  +++    +L +a+  H + eGl +   i  a   + +++  a++ ++  P+g a+G av  s  ++      + G++ +l aG++i + + +ll + +  ++
  MMETSP1174-20130828|5162_1 158 LHKEDHV-------S-NgqtsgdeETSTLNVYDAKGPEEKDQKKLVR---MGMLTALAIGIHNFPEGLATFVAtlDDPTVGAGLAIAIAIHNVPEGLCVAIPIYYATGDRWQAFKWALISGISEPIGAALGWAVLYSVMDDT-----LYGVIFGLVAGMMINICIHELLPTAYKYDP 318
                 1111111.......1.1222221122333333444444333434433...344445555569999999754431156666689**************************************************998777765.....467777888999999999999887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1201.80
//
Query:       MMETSP1174-20130828|5172_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|5165_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|5173_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.46
# Mc/sec: 2163.47
//
Query:       MMETSP1174-20130828|5174_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|5183_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-08   29.7   0.0    3.9e-08   29.4   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   9.5e-12   3.9e-08     101     180 ..       2      90 ..       1      98 [. 0.82

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 9.5e-12
   TIGR03903 101 vhRDLkPqnimvsaadveshakvLDFGigaLl.........pgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivl 180
                 +hRD+kP+ni+++ ++++   k+ DFG+  +          +g + ad     r+    Gs  Y aPe +Rg      +Dl++ G ++ 
  MMETSP1174-20130828|5183_1   2 IHRDIKPENILLASKNNDVDIKLSDFGVVKIFdlaqsegtdSGGGGADMRSRGRAFSQCGSGMYIAPEVVRGQGYDQSADLWSVGTVLY 90 
                 8**************************98653222222222455678999999*******************************98764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 986.25
//
Query:       MMETSP1174-20130828|5189_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-93  310.5   0.1    3.8e-93  310.3   0.0    1.0  1  TIGR01311 glycerol_kin: glycerol kinase
    2.6e-22   76.9   1.0    3.2e-22   76.5   0.7    1.1  1  TIGR01312 XylB: xylulokinase
    1.3e-16   58.1   0.0    1.6e-16   57.7   0.0    1.1  1  TIGR01314 gntK_FGGY: gluconate kinase
    3.8e-07   27.0   3.0    2.5e-06   24.3   2.1    1.9  1  TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
    2.1e-06   24.6   0.4    3.1e-06   24.1   0.3    1.1  1  TIGR01234 L-ribulokinase: L-ribulokinase
  ------ inclusion threshold ------
      0.017   11.9   0.0      0.023   11.5   0.0    1.1  1  TIGR02628 fuculo_kin_coli: L-fuculokinase


Domain annotation for each model (and alignments):
>> TIGR01311  glycerol_kin: glycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.3   0.0   5.5e-96   3.8e-93     220     496 .]       9     285 ..       2     285 .. 0.97

  Alignments for each domain:
  == domain 1    score: 310.3 bits;  conditional E-value: 5.5e-96
   TIGR01311 220 vygeieeke.llkeevpitgvlGdqqaalvgqlclkkgeaKntYgtGcFlllntGekkviskhglLttvayklggkkptkyalEGsvavaGaavqwlrdnlklikkaeeveklaksvedsegvyfVPafsGLfaPyWdsdArgtivGltrkttkehiaraaleavafqardileamekdagvevkvLkvDGglsknnllmqiqadilgvkverpkvaettalGaAlaaglavgvwkseeeleksaeaeektfepemdeeerekkykkwkeaverslkw 496
                  +g i++++ +  ++v i +vlGdq+aa +gq c+++geaK+t+gtG+Fl+ln+G ++++s+ glL+t  y+  g+ p +yalEG+vavaG+++qwlrdnlkl ++aee+ +la sv++segv fVPaf+GLfaP+W+sdArg+++Glt++ t +hi +aal+a  +qa ++l+a + d+gv++k+L+vDGg++ n+ ++   a+ilgv+v+rp   e talG+A aaglavgvw s++ l+  ++a+++ f   m++e+r++  + w +av+r+ +w
  MMETSP1174-20130828|5189_1   9 SFGAIQSEAcASLAGVRIGAVLGDQHAATFGQGCFSPGEAKATFGTGAFLMLNVGCSPAVSTRGLLSTPFYQRAGEPP-VYALEGAVAVAGSLIQWLRDNLKLGDSAEEIAALAASVPSSEGVIFVPAFNGLFAPHWRSDARGVLCGLTAFHTGAHISQAALDASVYQAAEVLDAAALDTGVSLKELRVDGGMCVNDAFVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPSLDSLAGLWKADRRFFGEGMSSEHRTELKRDWAKAVDRAIGW 285
                 578888776567899**********************************************************99887.************************************************************************************************************************************************************************9999999********************9998 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.7   4.7e-25   3.2e-22     213     456 ..      12     256 ..       5     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 4.7e-25
   TIGR01312 213 kvreevakklGleegvkvaaGggdnaagAiGlgivkegkvlvslGtSGvv.lavedkaesdpegavhs..Fchalpgkwyplgvtls.atsalewlkellgeldveelneeaekvevgaegvlllPylsGERtPhldpqargsliGltanttradlarAvlegvafalrdsldilkelkglkikeirliGGGaksevwrqiladilglevvvpeeeegaalGaAilAaialgekdlveecseavvkqk 456
                 ++++e+ ++l   +gv++ a  gd+ a+  G g  ++g++    Gt   + l v  ++ ++++g +++  +  a     y l   ++ a+s ++wl+++l+  d +e  ++ +++ +++egv+++P ++G   Ph  ++arg+l+Glta +t a++ +A+l++ ++  ++ ld+    +g+++ke+r+ GG   ++++   la+ilg++v  p + e +alG A  A +a g   ++++++  +++++
  MMETSP1174-20130828|5189_1  12 AIQSEACASL---AGVRIGAVLGDQHAATFGQGCFSPGEAKATFGTGAFLmLNVGCSPAVSTRGLLSTpfYQRAGEPPVYALEGAVAvAGSLIQWLRDNLKLGDSAEEIAALAASVPSSEGVIFVPAFNGLFAPHWRSDARGVLCGLTAFHTGAHISQAALDASVYQAAEVLDAAALDTGVSLKELRVDGGMCVNDAFVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPSLDSLAGLWKADR 256
                 5555555555...788999999************************65431455567778888888764244454456788866665156678********877777777777778889********************************************************999*************************************************999997788888887777665 PP

>> TIGR01314  gntK_FGGY: gluconate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   2.4e-19   1.6e-16     243     463 ..      38     252 ..      23     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 2.4e-19
   TIGR01314 243 lgvnaikkgevavtigtsgair.tvidkpktdekgrifc..y..alteehyviggpvnnggvvlrwlrdellaseietakrlgvdpydvltkiakrvkpgadgllfhpylageraplwnanargsffgltlshkkehmiraalegviynlytvalalvevvdetlkmikatggfaksevwrqllsdifesevvvpesyessclgaiilglkavgkiedlsavssmv 463
                 +g  +  +ge+  t gt   +   v   p    +g + +  y  a +   y + g v   g +++wlrd+l  ++            ++++ +a+ v p ++g++f p + g  ap w ++arg + glt  h   h+ +aal+  +y+   v  a     + +lk ++  gg++  + +   l++i+   v+ p s es+ lg    +  avg   +l+ +  + 
  MMETSP1174-20130828|5189_1  38 FGQGCFSPGEAKATFGTGAFLMlNVGCSPAVSTRGLLSTpfYqrAGEPPVYALEGAVAVAGSLIQWLRDNLKLGD----------SAEEIAALAASV-PSSEGVIFVPAFNGLFAPHWRSDARGVLCGLTAFHTGAHISQAALDASVYQAAEVLDAAALDTGVSLKELRVDGGMCVNDAFVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPSLDSLAGLW 252
                 555666677777777775544314555677777776543223113344579999***************997665..........45899****998.99*****************************************************99988888889******************************************99999**9998888776665 PP

>> TIGR01315  5C_CHO_kinase: FGGY-family pentulose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   2.1   3.7e-09   2.5e-06     350     501 ..      96     248 ..       4     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.7e-09
   TIGR01315 350 akkniydylnerlkelaaktsaasvsa...lvkdlfvypdllGnrsPiadPnlrgviiGldmerdkdslallylatleaiaygtrqivealt.aaGaviksillsGgaaqnellvqlladicdlPvlipdvqeavllGaailGakaagtaesleea 501
                 +  ++ ++l ++lk    +++ a ++a     +++ ++p + G  +P    ++rgv++Gl   +          a+l a  y+  ++++a    +G+++k++ + Gg++ n+ +v  la+i ++ v  p   e   lG a     a g+ +sl + 
  MMETSP1174-20130828|5189_1  96 VAGSLIQWLRDNLKLGDSAEEIAALAAsvpSSEGVIFVPAFNGLFAPHWRSDARGVLCGLTAFHTGA---HISQAALDASVYQAAEVLDAAAlDTGVSLKELRVDGGMCVNDAFVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPSLDSL 248
                 5556889999988865555554444441114689**************************9876654...4457999************8752689*********************************999999999998888888888887664 PP

>> TIGR01234  L-ribulokinase: L-ribulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.3   4.5e-09   3.1e-06     366     490 ..     121     244 ..      98     254 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 4.5e-09
   TIGR01234 366 aakqesgehglvaldWfnGnrsvlvdarlkGvlvgltlatkaeelyralveatafGtrmivetf.kesGvaveellaaGGiaeknplvmqiyadvlnlplkivasdqapalGaaifaavaageyad 490
                 a    +  +g++ +  fnG  ++    + +Gvl glt   +  ++ +a ++a  + +  ++++   + Gv+++el + GG++  +   +   a++l++ +    s  ++alG a  a +a g++  
  MMETSP1174-20130828|5189_1 121 A-ASVPSSEGVIFVPAFNGLFAPHWRSDARGVLCGLTAFHTGAHISQAALDASVYQAAEVLDAAaLDTGVSLKELRVDGGMCVNDA-FVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPS 244
                 2.33345668888999******************************************999975269**************66555.556789***************************998765 PP

>> TIGR02628  fuculo_kin_coli: L-fuculokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05     0.023     350     457 ..     147     254 ..      94     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.3e-05
   TIGR02628 350 lgqgaieGlslfttrGeiyraaleglakklkrrldvlekvsqlkakelvvvGGGsknvlwnqiranaldlpvkvvddaeatvlGaalfafaGvGiyedveeaqaqlkp 457
                   +g + Gl+ f t  +i +aal+    +  + ld     + ++ kel v GG + n+ +    an+l ++v    + e+t lG a  a   vG+++++++     k 
  MMETSP1174-20130828|5189_1 147 DARGVLCGLTAFHTGAHISQAALDASVYQAAEVLDAAALDTGVSLKELRVDGGMCVNDAFVTHLANILGVTVARPLSLESTALGVAQAAGLAVGVWPSLDSLAGLWKA 254
                 5678889****************************9999999*******************************999**********************9987655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 1385.89
//
Query:       MMETSP1174-20130828|5186_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 305.46
//
Query:       MMETSP1174-20130828|5198_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.2   0.0      0.036    9.8   0.0    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase
      0.087   11.0   1.6       0.16   10.2   0.0    1.9  2  TIGR00280 L37a: ribosomal protein L37a


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   1.8e-05     0.036     431     460 ..      34      63 ..      25      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.8e-05
   TIGR01815 431 rrwyGGavGrlgfnGdlntGltlrtirlkd 460
                 +   GGa   lgfnG+l +G   rtir+ d
  MMETSP1174-20130828|5198_1  34 QGHTGGAYALLGFNGQLVSGSGDRTIRVWD 63 
                 5678***********************977 PP

>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.8e-05      0.16      48      80 ..      20      52 ..      12      63 .. 0.81
   2 ?    0.7   0.3     0.069   1.4e+02      46      67 ..      58      79 ..      51      89 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.8e-05
   TIGR00280 48 krestgiWkCrkCgakvaGGaytpvtaagktve 80
                k    + W+C++  +  +GGay      g+ v+
  MMETSP1174-20130828|5198_1 20 KLWDPSTWTCQQTLQGHTGGAYALLGFNGQLVS 52
                5556789***************98888877776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.069
   TIGR00280 46 avkrestgiWkCrkCgakvaGG 67
                +++    + W+C++  +  + G
  MMETSP1174-20130828|5198_1 58 TIRVWDPSTWTCQQTLQGHTAG 79
                5555566889998865544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|5194_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-12   44.0   0.0    6.4e-12   43.4   0.0    1.2  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    6.5e-10   36.5   0.0    1.1e-09   35.8   0.0    1.3  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    1.6e-09   34.3   0.0    2.6e-09   33.6   0.0    1.2  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    2.4e-07   28.1   0.0    4.1e-07   27.3   0.0    1.2  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
    2.4e-05   21.2   0.0    3.5e-05   20.6   0.0    1.2  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   7.8e-15   6.4e-12       1     107 [.     795     907 ..     795     919 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 7.8e-15
   TIGR01387   1 ilvvedeqktaeylqqGlsesGyvvdivsnGrdGlhlaekddydliildvmlpgldGwevlkalre......saketpvllltardevadkvkGlelGaddylvkpfefaell 107
                 +lv +d + t ++l+  + ++Gyvv+ v nG+d l+  +k++ydl+ ld+ +p ++G+    ++re       +k++p+  l+ +   ++k    e+G d +  kp +++ l+
  MMETSP1174-20130828|5194_1 795 VLVADDSDSTLKFLKTRFENNGYVVETVCNGQDALKSMKKKNYDLVFLDLEMPIMNGFSCSAEFREwerannRTKRQPICALSMHTGKEEKEMCAEVGVDFFEAKPAKIPGLM 907
                 7999*******************************************************999998633332235678999999999999999999999999999999988876 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.3e-12   1.1e-09       4     113 ..     794     907 ..     791     915 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.3e-12
   TIGR02154   4 rilvvedeeairellaynlekegyevveaedaeealalikeelPdlilldWmlpgtsGielarrlrk....eeetreiPiimltargeeedrvrgletGaddyvvkPfspkell 113
                  +lv +d ++  ++l+  +e++gy v ++ ++++al+ +k++  dl+ ld  +p + G +   ++r+    +++t+  Pi  l+ ++  e++  + e+G+d +  kP  +  l+
  MMETSP1174-20130828|5194_1 794 CVLVADDSDSTLKFLKTRFENNGYVVETVCNGQDALKSMKKKNYDLVFLDLEMPIMNGFSCSAEFREweraNNRTKRQPICALSMHTGKEEKEMCAEVGVDFFEAKPAKIPGLM 907
                 699***************************************************9999988766653211277899******************************98776665 PP

>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   3.1e-12   2.6e-09     703     813 ..     794     907 ..     786     918 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 3.1e-12
   TIGR02956 703 rvLlvEDNevnamvaqglleklGhkvtlaesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeake..e.lkfiavsAhvfnedvekylaagFdgflaKPlsekqLv 813
                  vL+ +D   +++  +   e+ G+ v ++ +g++Al+ +++k++Dl++lD+++p ++G   + + +e e a++  +  ++ a+s h  +e+ e   ++g d f aKP +   L+
  MMETSP1174-20130828|5194_1 794 CVLVADDSDSTLKFLKTRFENNGYVVETVCNGQDALKSMKKKNYDLVFLDLEMPIMNGFSCSAEFREWERANNrtKrQPICALSMHTGKEEKEMCAEVGVDFFEAKPAKIPGLM 907
                 688888888888888999999**************************************************998745999***************************8876665 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     5e-10   4.1e-07       5     115 ..     795     907 ..     792     918 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5e-10
   TIGR02875   5 ivivddnkefvellkeylaaqedlevvGvaknGvealelikekkpdvvvldiimpyldGlgvleklaeiel.....kakpkvlllsavGqekitkravelGadyyvlkpfdleila 115
                 ++++dd     ++lk  + +  +  vv +  nG++al+ +k+k+ d+v ld+ mp ++G++   +++e e+     k++p +  ls    ++  + + e+G d++  kp  +  l 
  MMETSP1174-20130828|5194_1 795 VLVADDSDSTLKFLKTRFEN--NGYVVETVCNGQDALKSMKKKNYDLVFLDLEMPIMNGFSCSAEFREWERannrtKRQP-ICALSMHTGKEEKEMCAEVGVDFFEAKPAKIPGLM 907
                 67899999999999987764..6689999********************************9988877654111113445.555665544445677889*********98876664 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.2e-08   3.5e-05       1      65 [.     795     859 ..     795     916 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.2e-08
   TIGR01818   1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralareqpdllitdvrmPgedgldllkkik 65 
                 vlv+dd  s    l++ ++++g+ v+t+ n++ +l+ +++++ dl++ d+ mP ++g++  ++ +
  MMETSP1174-20130828|5194_1 795 VLVADDSDSTLKFLKTRFENNGYVVETVCNGQDALKSMKKKNYDLVFLDLEMPIMNGFSCSAEFR 859
                 799***9999999********************************************98765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.56
# Mc/sec: 2130.35
//
Query:       MMETSP1174-20130828|5203_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|5202_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1640.44
//
Query:       MMETSP1174-20130828|5204_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 911.92
//
Query:       MMETSP1174-20130828|5205_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1174-20130828|5208_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 721.82
//
Query:       MMETSP1174-20130828|5214_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.6   1.5      0.058   11.6   0.2    2.0  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
      0.032   10.9   0.2      0.036   10.8   0.1    1.0  1  TIGR00492 alr: alanine racemase


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.8e-05     0.058       8      45 ..       2      41 ..       1      48 [. 0.68
   2 ?    1.3   0.0     0.046        95      26      46 ..      50      70 ..      46      74 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.8e-05
   TIGR02811  8 dlsRRdLLkglavgaaaga.vaaatgrva.sasaaaepse 45
                d++ R+LLk+  +++aa   +aa+++  + +a+++++ ++
  MMETSP1174-20130828|5214_1  2 DPASRKLLKNEVTAMAATRdAAAVVSHFLsQAEKDKDFTD 41
                7889*****9888877764155555555447777776555 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.046
   TIGR02811 26 avaaatgrvasasaaaepsep 46
                ++a  tgr+as ++ + +s+ 
  MMETSP1174-20130828|5214_1 50 SLAHLTGRLASQEEEVVTSQE 70
                577889999988887777764 PP

>> TIGR00492  alr: alanine racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.8e-05     0.036     145     192 ..      11      58 ..       3      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.8e-05
   TIGR00492 145 kklrklkkllklegivsHlatadekkktttkkqierfksfleslkkkk 192
                 +++++++  ++ +++vsH+ +  ek+k+ t   ++ f++ l++l  + 
  MMETSP1174-20130828|5214_1  11 NEVTAMAATRDAAAVVSHFLSQAEKDKDFTDSDTHVFQTSLAHLTGRL 58 
                 57889999999********99999999**************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|5210_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1785.15
//
Query:       MMETSP1174-20130828|5212_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 832.79
//
Query:       MMETSP1174-20130828|5224_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|5226_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 492.28
//
Query:       MMETSP1174-20130828|5223_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1042.71
//
Query:       MMETSP1174-20130828|5229_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 225.16
//
Query:       MMETSP1174-20130828|5227_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-70  234.1   0.0    1.8e-63  212.5   0.0    2.1  2  TIGR00749 glk: glucokinase


Domain annotation for each model (and alignments):
>> TIGR00749  glk: glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.0   4.5e-67   1.8e-63      38     276 ..      48     305 ..      23     317 .. 0.86
   2 !   19.8   0.0   2.1e-08   8.7e-05     273     314 ..     326     367 ..     313     368 .. 0.87

  Alignments for each domain:
  == domain 1    score: 212.5 bits;  conditional E-value: 4.5e-67
   TIGR00749  38 avvrvyleeakvelkd..pi...kgcfaiatPiigdfvrltnld..Walsieelkqelalaklelindfaavayailalkee.dliqlggakveesaaiailGaGtGlGvatliqqsd.grykvlageGghvdfaPrseleillleylrkky...grvsaervlsGsGlvliyealskrkgerevsklskeelkekd............iseaalegsdvlarralelflsilGalagnlalklgarGGvyvaGGivPrfiel 276
                 ++   ++ eak   k+   +    +c+a a+Pi ++ v +tn +  W++ ++el++ l++  + lindf+a +y+il+l+ee +   l+ a+ +++a+ia lGaGtGlG+++l  + d + y  +a+eGghvdfa rs+le+ + +yl++k+    r+s+erv+sG Gl++iye+l +     e skl  +e ++++            is+ a  +sd l++ +++lf+ ++Ga+ag  alk+ + GG+y++GG+  + + l
  MMETSP1174-20130828|5227_1  48 DMYEEFMAEAKPLAKEtnNVkvsAACIAAAGPISNNSVTFTNIEppWHIDGDELERRLGIDTVLLINDFVASGYGILTLNEEkECRTLQNAPRVPGAPIACLGAGTGLGQCFLTAENDsDGYACFASEGGHVDFAARSQLEFDMQQYLKTKFgdeKRISVERVVSGRGLANIYEFLCQYS---ETSKLEDKETTKQIekaavdnqegkvISKNA--ESDRLCKMTMDLFIEAYGAEAGSCALKFTPLGGLYLSGGLTSKNMGL 305
                 5555566666655544222244579*****************8666*********************************98825678**************************98776257*******************************87779*******************9877...6777777776666677788888888799887..67889***********************************9987655 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 2.1e-08
   TIGR00749 273 fiellkkssfraafedkGrlkellasiPvqvvlkkkvGllGa 314
                  + +  ++ f++++ dkGrl + + +iPv+ +l+++ G  Ga
  MMETSP1174-20130828|5227_1 326 QLTIRSHGRFMEGLRDKGRLSSVVRNIPVYAILDEDLGKRGA 367
                 556667899****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1332.17
//
Query:       MMETSP1174-20130828|5231_1  [L=965]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.1  19.2    0.00015   19.3   0.7    5.4  5  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.4    0.0029        12      13      24 ..      16      26 ..      13      29 .. 0.75
   2 !   19.3   0.7   3.7e-08   0.00015       6      27 ..      34      54 ..      32      55 .. 0.90
   3 ?    0.4   0.0     0.036   1.5e+02      14      21 ..      72      79 ..      71      83 .. 0.81
   4 !    9.6   0.0   4.4e-05      0.18       5      19 ..      89     103 ..      87     107 .. 0.90
   5 ?    0.4   0.4     0.036   1.5e+02       6      20 ..     116     130 ..     113     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0029
   TIGR01376 13 kgsGGAIyatgk 24
                + +GG Iya+++
  MMETSP1174-20130828|5231_1 16 G-GGGVIYASSA 26
                4.9******944 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.7e-08
   TIGR01376  6 lFsnNsakgsGGAIyatgkisi 27
                +F +N+a+++GGAIy + + +i
  MMETSP1174-20130828|5231_1 34 SFLSNTAENFGGAIYVE-YSTI 54
                8**************99.8877 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.036
   TIGR01376 14 gsGGAIya 21
                gsGGAI +
  MMETSP1174-20130828|5231_1 72 GSGGAILM 79
                69****75 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 4.4e-05
   TIGR01376   5 ilFsnNsakgsGGAI 19 
                  +F++Nsa  +GGA+
  MMETSP1174-20130828|5231_1  89 CTFESNSAPVYGGAL 103
                 59************6 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.036
   TIGR01376   6 lFsnNsakgsGGAIy 20 
                 +F  N+a   GG  +
  MMETSP1174-20130828|5231_1 116 SFVANTADQTGGSVF 130
                 899999999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 2234.55
//
Query:       MMETSP1174-20130828|5233_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   13.2   0.5     0.0069   12.3   0.1    1.6  2  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   1.7e-06    0.0069     438     540 ..      99     196 ..      83     212 .. 0.69
   2 ?   -3.5   0.0      0.11   4.4e+02     676     704 ..     325     352 ..     321     355 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-06
   TIGR00198 438 krrilasglsvselvsvawasastfrssdkrggangarirlkpqkdwevnepeelakvlavlekiqkefak.gkvsladlivlggvaavekaaraaglsvkvpf 540
                 ++++l   +   + + +a + a ++ +    gg +g+      + +w +        ++ +l  iqk++++  +vslad+i  +g  a+e  +    ++v+v  
  MMETSP1174-20130828|5233_1  99 RNELLRNPMQAPDWIKLAISDALSYNQKTDGGGPDGTVQFDVDKMKWGSG-----SATVQILRTIQKDVKRtNEVSLADVIAYAGAEAIEA-SGGPRIQVQVGR 196
                 45566666777777888888888888888888888876555556677766.....3445667778888776348************99984.344455555544 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.11
   TIGR00198 676 svlravaevyasddakekfvkdfvaawvk 704
                 +  +ava+ y+s   +e f kd++ a+++
  MMETSP1174-20130828|5233_1 325 DASKAVAQKYGS-GKREVFFKDLADAYIR 352
                 667899999996.5799999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1214.30
//
Query:       MMETSP1174-20130828|5238_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 668.94
//
Query:       MMETSP1174-20130828|5239_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|5241_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|5236_1  [L=824]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-27   92.4   0.0      4e-07   27.7   0.0    8.2  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0024        10       6      26 ..     315     335 ..     313     345 .. 0.83
   2 !   15.1   0.0   9.4e-07    0.0039       2      34 ..     347     379 ..     346     380 .. 0.94
   3 !   14.1   0.0     2e-06    0.0082       2      34 ..     382     414 ..     381     415 .. 0.90
   4 ?    1.0   0.1     0.031   1.3e+02      15      35 .]     434     454 ..     431     454 .. 0.87
   5 !   27.7   0.0   9.9e-11     4e-07       1      35 []     455     489 ..     455     489 .. 0.96
   6 !    4.7   0.0     0.002       8.4       1      24 [.     490     514 ..     490     529 .. 0.81
   7 !   13.4   0.0   3.5e-06     0.014       2      34 ..     531     563 ..     530     564 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0024
   TIGR00756   6 lisglckagrveeAlelfdeM 26 
                 ++++++ +gr+e Al++ +++
  MMETSP1174-20130828|5236_1 315 VLRAYGVQGRLEAALDFAKRL 335
                 699************986665 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 9.4e-07
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty++lis+ + a+++e A el+deM+ +g+ P+
  MMETSP1174-20130828|5236_1 347 TYTALISAAAIAKKPEVANELLDEMRWKGLQPT 379
                 9************************98888886 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 2e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 t+++ +++ ++ gr+++Al + d+M+e+g++ +
  MMETSP1174-20130828|5236_1 382 TWSATLHAQVRGGRFSDALAVADRMQEDGHKVS 414
                 788889999********************9975 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.031
   TIGR00756  15 rveeAlelfdeMkergivPda 35 
                  ++  le+++  + ++i+Pd+
  MMETSP1174-20130828|5236_1 434 VFDRSLEMWENVMMANIKPDV 454
                 58999**************96 PP

  == domain 5    score: 27.7 bits;  conditional E-value: 9.9e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v+y+++i+++ +a+++e A+ ++deM+ ++++P++
  MMETSP1174-20130828|5236_1 455 VAYTAFIRCMTRAREIERAVTILDEMRQADVKPNI 489
                 68*******************************95 PP

  == domain 6    score: 4.7 bits;  conditional E-value: 0.002
   TIGR00756   1 vtyntlisglckagrveeAlelf.d 24 
                 vtyn+l++g + a ++++ + lf d
  MMETSP1174-20130828|5236_1 490 VTYNVLLRGVASAPQWHKSCALFtD 514
                 7999999999999999998888844 PP

  == domain 7    score: 13.4 bits;  conditional E-value: 3.5e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 t n+li+ +++ g+v  A+ +++e+ +rg+ Pd
  MMETSP1174-20130828|5236_1 531 TLNALIKTCAEVGDVVNARAYMKEIAARGLTPD 563
                 78******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.47
# Mc/sec: 2314.02
//
Query:       MMETSP1174-20130828|5242_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1118.61
//
Query:       MMETSP1174-20130828|5247_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|5248_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|5258_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 173.24
//
Query:       MMETSP1174-20130828|5257_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|5259_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|5264_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|5266_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|5265_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.3   0.1    2.8e-06   24.7   0.1    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      4e-05   20.9   0.1    9.7e-05   19.6   0.0    1.5  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00025   18.5   0.3    0.00037   17.9   0.2    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW
    0.00054   17.2   0.2    0.00077   16.6   0.1    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   2.7e-09   2.8e-06      56     120 ..      75     139 ..      62     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.7e-09
   TIGR02021  56 kkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaenveFevndleslegkfD 120
                  kvl AGCG   l +++ ++G  +++ vDis  +v++ ++++ ++   + veF   d+  ++g+f+
  MMETSP1174-20130828|5265_1  75 FKVLIAGCGNSRLCEDMVDDGFsQIVNVDISRIVVDQMEEKYTDTLG-DGVEFRQMDVCDMQGEFE 139
                 5899*****************6489******************9994.88****999999999986 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   9.4e-08   9.7e-05      40     151 ..      74     194 ..      61     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 9.4e-08
   TIGR01934  40 eekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLp..fednsfdav......tiafGlR.NvtdiekaLkelaRVlkpggrlvilefskpknal 151
                 + kvl   +G  +l   +      +++ vD+s  +++  ++k++++    vef + d+ ++   fed++f+av         + +    ++++++L+e+ R l++ g  +++   kp+n+l
  MMETSP1174-20130828|5265_1  74 DFKVLIAGCGNSRLCEDMVDDGFSQIVNVDISRIVVDQMEEKYTDTLGDGVEFRQMDVCDMQgeFEDKEFQAVidkaliDTIYCMEhGSKKVKQVLHEFDRLLTHTGVYICVSCGKPENRL 194
                 55677778999999999999888***********************8899***********888******987444333234666414677899*******************99999864 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   3.7e-07   0.00037       6     100 ..      66     174 ..      62     190 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.7e-07
   TIGR02081   6 ailelipagsrvLDlGcGdGeLLallrdekqveg.......aGleideenvlacvarGveviqqdldegLeafedksfDvvv...lsqtlqav....rnteeiLdellR 100
                 +i +++++  +vL  GcG+ +L + + d+   +          ++  ee+ ++++  Gve  q d+ +    fedk+f  v+   l  t+  +    ++++++L+e  R
  MMETSP1174-20130828|5265_1  66 IIKKYVEPDFKVLIAGCGNSRLCEDMVDDGFSQIvnvdisrIVVDQMEEKYTDTLGDGVEFRQMDVCDMQGEFEDKEFQAVIdkaLIDTIYCMehgsKKVKQVLHEFDR 174
                 58899*******************99997543331233333445555678899999*************************9444455555552222345566666655 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.5e-07   0.00077      50     141 ..      74     167 ..      45     186 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.5e-07
   TIGR01983  50 glkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeee.kesfDvvlamEvlEHvadleeilkecae 141
                 + kvl  GcG   l+e +   g++ ++ +D+s+ +++  +++ +      +e+++ +v +++ e  +++f +v+   +++ +  +e+  k++ +
  MMETSP1174-20130828|5265_1  74 DFKVLIAGCGNSRLCEDMVDDGFSqIVNVDISRIVVDQMEEKYTDTLGDGVEFRQMDVCDMQGEFeDKEFQAVIDKALIDTIYCMEHGSKKVKQ 167
                 679999*****************98********99998887776666669**********9876437889999987776665555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1196.42
//
Query:       MMETSP1174-20130828|5262_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1175.53
//
Query:       MMETSP1174-20130828|5272_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.2   0.0     0.0087   12.8   0.0    1.1  1  TIGR02776 NHEJ_ligase_prk: DNA ligase D


Domain annotation for each model (and alignments):
>> TIGR02776  NHEJ_ligase_prk: DNA ligase D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.1e-06    0.0087     166     231 ..     270     335 ..     264     340 .] 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-06
   TIGR02776 166 sgrskdWlKlKcrkrqevvitgytesngarklgallvgvyeegelkyvgkvgtGfeaeelkellkr 231
                  +rs++W K+K  + ++++    + + g ++ g l v v +  +   +++v++Gf++ e+++ll +
  MMETSP1174-20130828|5272_1 270 RRRSNEWYKMKLEAAEDIIFKQTQRPVGPKEAGVLEVDVVAPVKSMSRARVTSGFGSYEMQDLLGK 335
                 46***************************************99**************999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1068.48
//
Query:       MMETSP1174-20130828|5270_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1776.50
//
Query:       MMETSP1174-20130828|5269_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 743.54
//
Query:       MMETSP1174-20130828|5273_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 783.69
//
Query:       MMETSP1174-20130828|5274_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1288.03
//
Query:       MMETSP1174-20130828|5275_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 430.91
//
Query:       MMETSP1174-20130828|5276_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-06   23.6   6.7      0.015   12.8   1.5    3.0  2  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   1.1   2.3e-05     0.095      10      43 ..      15      48 ..       1      49 [. 0.71
   2 !   12.8   1.5   3.7e-06     0.015      11      43 ..      43      75 ..      28      76 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.3e-05
   TIGR03804 10 ntlenNtasnNsyGIyLydSsnNtlsnNtasnNg 43
                 t e++  ++ ++G y++dSs  t++  t+ +++
  MMETSP1174-20130828|5276_1 15 TTFESCSSYYDGGGMYVSDSSSATINATTFESCS 48
                2357888888889999999999999999888875 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.7e-06
   TIGR03804 11 tlenNtasnNsyGIyLydSsnNtlsnNtasnNg 43
                t e++ a + ++G y+ dSs  t++n t+ +++
  MMETSP1174-20130828|5276_1 43 TFESCSAGDYGGGMYVADSSSATINNTTFESCS 75
                468888888999*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 317.60
//
Query:       MMETSP1174-20130828|5281_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|5280_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1216.77
//
Query:       MMETSP1174-20130828|5285_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 258.70
//
Query:       MMETSP1174-20130828|5288_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|5291_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 248.14
//
Query:       MMETSP1174-20130828|5284_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-40  136.3   0.1    3.7e-40  135.7   0.0    1.1  1  TIGR00717 rpsA: ribosomal protein S1
    2.7e-16   57.0   0.9    4.8e-14   49.5   0.5    2.1  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0016   15.9   0.1      0.012   13.0   0.0    2.2  2  TIGR00448 rpoE: DNA-directed RNA polymerase
     0.0033   13.6   0.1     0.0068   12.6   0.0    1.5  2  TIGR02063 RNase_R: ribonuclease R


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   3.7e-43   3.7e-40      15     269 ..     108     358 ..      98     369 .. 0.87

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 3.7e-43
   TIGR00717  15 etkegsvvkGtVveinkdtvlVdvGlKsEgripvee.....fedaqlelqvgdevevvlervedregetvlsrekaqrkeakiklekaeeeksiveGkivrkvKgGfiVdleGveaFLpgSqvdvkkvkdleeligkelkfkilkldkkrenivvsrralleeerskkreelleklkegeevkGvVknitdfgafvdlggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlkedPWeeiekk 269
                 ++ +g   +GtV++ n   +lVd+G K+ + +p+ e     + d+++  + ++  e  +   ed++g+ +ls ++ + ++a++++ +a+ e+   eG++v+ ++gG i +++G++aFLpgS+        +eelig  l++k l ++++++++vvs r+ + e+        +++l+ g++++GvVk i ++gafv+ +g+ gllhi+++s+ rv+  + +++++  +k +vi  Dk ++ri+ls k l+++P + +++ 
  MMETSP1174-20130828|5284_1 108 AMSRGDRIEGTVIQFNPTGALVDIGAKACAFMPLREaalipISDVSKSCDIDERREFQVISDEDENGQIMLSIRRIEYEKAWQSVSAAQVEDIAFEGEVVGVNRGGVICEVQGLRAFLPGSHLCGA--LPTEELIGTILPLKFLEVSEENNKLVVSNRRAVVED-------QMKELSRGDVLQGVVKAIKPYGAFVEINGMSGLLHISQISYDRVEDINSVLQMNTLIKCMVIDHDKVNGRIALSTKTLEPEPGDMLRDY 358
                 556678889*******************99999998333333444455555666667777788999*******************************************************98655..4699***********************976655433.......345699****************************************************************************8777654 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0     0.001         1     611     688 ..     104     182 ..      89     183 .. 0.89
   2 !   49.5   0.5   4.7e-17   4.8e-14     602     688 ..     260     346 ..     249     347 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.001
   TIGR03591 611 eitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvl.eidkkgrvklsrka 688
                 + ++ +  g+  eg+v++  + ga+v++  +  +++ + e a   +++v++  +++++ + +v+ + d++g++ ls+++
  MMETSP1174-20130828|5284_1 104 DQVQAMSRGDRIEGTVIQFNPTGALVDIGAKACAFMPLREAALIPISDVSKSCDIDERREFQVIsDEDENGQIMLSIRR 182
                 5678888999***********************************************9999987367889*****9886 PP

  == domain 2    score: 49.5 bits;  conditional E-value: 4.7e-17
   TIGR03591 602 aekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                 +++ ++++e+ ++e   g+v +g v+ i+++gafve+ +g  gl+hiS+++ +rve++++vl+++  +k  v++ dk +gr+ ls+k+
  MMETSP1174-20130828|5284_1 260 VSNRRAVVEDQMKELSRGDVLQGVVKAIKPYGAFVEI-NGMSGLLHISQISYDRVEDINSVLQMNTLIKCMVIDHDKvNGRIALSTKT 346
                 556678899***************************8.6899**********************************989******986 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   1.7e+02      82     103 ..     112     133 ..      96     140 .. 0.83
   2 !   13.0   0.0   1.2e-05     0.012      82     119 ..     277     314 ..     265     360 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.16
   TIGR00448  82 qeiveGevieivefGafvslGp 103
                 ++ +eG vi+    Ga v +G 
  MMETSP1174-20130828|5284_1 112 GDRIEGTVIQFNPTGALVDIGA 133
                 5669***************996 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.2e-05
   TIGR00448  82 qeiveGevieivefGafvslGplddllhvsqvlddyvv 119
                 +++++G v  i  +Gafv +  + +llh+sq+ +d v 
  MMETSP1174-20130828|5284_1 277 GDVLQGVVKAIKPYGAFVEINGMSGLLHISQISYDRVE 314
                 57999***************************999874 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.56   5.8e+02     360     380 ..     175     195 ..     162     200 .. 0.80
   2 !   12.6   0.0   6.6e-06    0.0068     629     665 ..     277     311 ..     261     323 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.56
   TIGR02063 360 avikskarltYeevnkilegk 380
                  ++ s +r+ Ye++++ ++ +
  MMETSP1174-20130828|5284_1 175 QIMLSIRRIEYEKAWQSVSAA 195
                 689999999999999987765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.6e-06
   TIGR02063 629 GeefegvissvtsfGlFveLeentieGLvhissLkdd 665
                 G++++gv+ ++  +G Fve++   ++GL his+++ d
  MMETSP1174-20130828|5284_1 277 GDVLQGVVKAIKPYGAFVEING--MSGLLHISQISYD 311
                 999*****************99..9********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1390.49
//
Query:       MMETSP1174-20130828|5294_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|5295_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|5293_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-05   19.3   0.0    0.00013   18.7   0.0    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.2e-08   0.00013     138     209 ..     272     346 ..     269     357 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.2e-08
   TIGR00877 138 kgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkf.gea..gekvviEefleGeEvsllalvdgktvvp 209
                 +++p +vvk+++  a   v v++d+++a ++ e++l++ +  +ea  ++ v+i ef+ G+E ++ ++    +++ 
  MMETSP1174-20130828|5293_1 272 TKSPLCVVKPERGVASTDVEVCYDVNQARAVFERLLVTPAWpEEAdpNRAVLIQEFVTGQEYAVDTVSRDGEHKV 346
                 567889*****9999***********************999755522678**************88875544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1629.38
//
Query:       MMETSP1174-20130828|5296_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 987.92
//
Query:       MMETSP1174-20130828|5298_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.8   3.4        1.2    7.0   0.2    2.0  2  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2    0.0025        10      40      62 ..      11      33 ..       9      36 .. 0.80
   2 ?    7.0   0.2   0.00029       1.2      40      59 ..      39      58 ..      38      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0025
   TIGR01149 40 GkkvGRDiGiLYGlviGllllli 62
                G  +G D Gi  G+ +G  l ++
  MMETSP1174-20130828|5298_1 11 GTPLGTDRGITLGIPVGTALGML 33
                55679999999999999888776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00029
   TIGR01149 40 GkkvGRDiGiLYGlviGlll 59
                G  +GR  GiL G ++G+ l
  MMETSP1174-20130828|5298_1 39 GPAIGRPDGILDGKLVGIPL 58
                5679*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|5308_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 487.63
//
Query:       MMETSP1174-20130828|5306_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1228.07
//
Query:       MMETSP1174-20130828|5311_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 586.62
//
Query:       MMETSP1174-20130828|5310_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1165.15
//
Query:       MMETSP1174-20130828|5314_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|5316_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|5318_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 552.40
//
Query:       MMETSP1174-20130828|5322_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|5324_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|5321_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.6   0.0      0.055    9.8   0.0    1.3  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   1.3e-05     0.055     503     541 ..     158     200 ..     143     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.3e-05
   TIGR01348 503 acftisslGgiGgtaftPivnaPe...va.ilGvsksalePvW 541
                 a f  ss+G +Gg +f+P+v   e   va +l v+k    P W
  MMETSP1174-20130828|5321_1 158 ANFERSSVGMVGGGHFSPVVAYNEhedVAlVLDVAKYKYPPTW 200
                 67899***************65543347746899999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1074.12
//
Query:       MMETSP1174-20130828|5328_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1151.90
//
Query:       MMETSP1174-20130828|5326_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|5325_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1484.88
//
Query:       MMETSP1174-20130828|5331_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1446.70
//
Query:       MMETSP1174-20130828|5341_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|5340_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 964.89
//
Query:       MMETSP1174-20130828|5346_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|5344_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|5347_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 293.98
//
Query:       MMETSP1174-20130828|5351_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|5352_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.1   0.0     0.0097   12.8   0.0    1.9  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0   0.00071       2.9      15      80 ..       6      69 ..       3      91 .. 0.78
   2 !   12.8   0.0   2.4e-06    0.0097       5      95 ..      36     124 ..      32     147 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00071
   TIGR03866 15 vsnekdntisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelp 80
                vs   dnti v d +t++  +tl+ G+    ++l++  +  +v+ s + +++v d++t    ++l+
  MMETSP1174-20130828|5352_1  6 VSGAGDNTIKVWDPSTWRCLETLQ-GHTSMVMALAQC-SGQLVSGSCDSTIRVWDPSTWLCHQTLR 69
                7778899**********9999987.666666666654.4556888888999999999988888876 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.4e-06
   TIGR03866   5 aasaaaekiyvsnekdntisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgk 95 
                  a a+ +   vs   d ti v d +t+   +tl+  +   G++   + +  +v+ +d+d ++v d++t + lk+l    d      e +g+
  MMETSP1174-20130828|5352_1  36 MALAQCSGQLVSGSCDSTIRVWDPSTWLCHQTLRG-H-TGGVMTLAECNGQLVSGADNDIIKVWDPSTWTFLKTLSGHTDSVWALTECSGQ 124
                 455666777899999**************999974.3.46888888999999**********************97666654444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1002.14
//
Query:       MMETSP1174-20130828|5354_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 456.61
//
Query:       MMETSP1174-20130828|5358_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    4.2   7.0        3.1    3.9   4.8    1.1  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   4.8   0.00076       3.1     381     536 ..     156     312 ..     137     392 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00076
   TIGR00926 381 esdvkvevlsdsrkvalvedllskeekesksgieskesskkpngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialske..esesvednlsvdksekaklyvlepavnleeed 536
                 + +++v+ l  ++++a ++  +     e k + ++++ ++  +     ++ ++++ +  ++s+++++++ +k+   +++++++ ++  ++ +++ ++++++ + +  l s+ ++++ ++++s+   + ++++++ ++ +++++++  ++p++++++++
  MMETSP1174-20130828|5358_1 156 PIPCTVTSLDTEQETAEPHPSHAAAWMECKDNRKEDTATTTGSSTADTTPLTPHEVIELASSRIHEKKKHKKNPGASTIITNNNTTTTNNKNNN-NKNNNNKKPTTSLASNQTHQSSSLQSSSLqpSPNNQTRHGGIIQNNNKNSTNMTPHTDQQHDE 312
                 5566666666666666665554444344443333333333323444455667788888888888888888877777777777755554444443.333334444444555555544444444430034444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1576.54
//
Query:       MMETSP1174-20130828|5363_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|5368_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|5366_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1955.84
//
Query:       MMETSP1174-20130828|5370_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|5365_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.6e-114  377.6   0.0   7.8e-114  377.3   0.0    1.0  1  TIGR00590 pcna: proliferating cell nuclear antigen (pcna)


Domain annotation for each model (and alignments):
>> TIGR00590  pcna: proliferating cell nuclear antigen (pcna)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.3   0.0  1.9e-117  7.8e-114       1     257 [.       1     258 [.       1     261 [. 0.98

  Alignments for each domain:
  == domain 1    score: 377.3 bits;  conditional E-value: 1.9e-117
   TIGR00590   1 mleaklkqasllkklleaikdlvndanfdcsesglslqalDsshvaLvslklraegfekyrCDrnlalgvnlaslskilkcannedsvvlkaedeadslalvfesekedkvsdyelklmdidvehLgipdleydavvelpskefarivrdlsqlsdsvvisitkegvkfsakGdiGsaevklkqes.evdkeeeavtievkepvkltfaikYlnaftkassLsdrvtlslseevPlvveykikdvGflkffLaPkied 257
                 m+ea+l q+ llkk++ea++dlv+dan+dc+e+glslqa+Dsshv+L +l lr++gf++yrCDr ++lg+nl +l kilkc++n+d+v+lk+ed++d l+++fe++  d++sd+e+klmdid+e+Lgip++ey++ +++ps ef+r++rdl  ++d+ +i +tkeg+kfs +GdiG+++v+l+++  +++kee++v+ie++ep +ltfa++Yl  ftkas L ++v+ls+s +vP+vvey i+  G+++f+LaPk+++
  MMETSP1174-20130828|5365_1   1 MFEARLIQGNLLKKIVEAVRDLVTDANVDCKEQGLSLQAMDSSHVSLCALVLRSDGFDHYRCDRPISLGLNLGNLGKILKCSGNDDVVTLKSEDQGDLLTIMFENPAADRISDFEMKLMDIDAEQLGIPEQEYACNIRMPSGEFQRLIRDLMVIGDTCTIGVTKEGIKFSVSGDIGNGNVMLRATVgSTEKEEDQVVIEMDEPCELTFAMRYLSMFTKASGLGPTVNLSMSPDVPIVVEYPIETFGHVRFYLAPKLDE 258
                 9*************************************************************************************************************************************************************************************998626779999**************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 678.06
//
Query:       MMETSP1174-20130828|5364_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-103  343.7   0.5   2.9e-103  343.6   0.3    1.0  1  TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein)
    1.2e-18   64.8   0.8    1.4e-18   64.6   0.6    1.0  1  TIGR01151 psbA: photosystem q(b) protein


Domain annotation for each model (and alignments):
>> TIGR01152  psbD: photosystem II D2 protein (photosystem q(a) protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.6   0.3  1.4e-106  2.9e-103     199     352 .]       1     154 []       1     154 [] 1.00

  Alignments for each domain:
  == domain 1    score: 343.6 bits;  conditional E-value: 1.4e-106
   TIGR01152 199 mgvagvlgaallcaihgatventlfedgdgantfrafnptqaeetysmvtanrfwsqifgvafsnkrwlhffmlfvpvtglwmsaigvvglalnlraydfvsqeiraaedpefetfytknillnegirawmaaqdqphenlifpeevlprgnal 352
                 mgvag+lg+allcaihgatventlfedgd+antfraf+ptq+eetysmvtanrfwsqifgvafsnkrwlhffmlfvpv+glw+saigvvglalnlraydfvsqe+raaedpefetfytknillnegir+wmaaqdqphen++fpeevlprgnal
  MMETSP1174-20130828|5364_1   1 MGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVAGLWTSAIGVVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFVFPEEVLPRGNAL 154
                 9*******************************************************************************************************************************************************97 PP

>> TIGR01151  psbA: photosystem q(b) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.6   6.8e-22   1.4e-18     200     304 ..       1     102 [.       1     117 [. 0.89

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 6.8e-22
   TIGR01151 200 lgvagvfggslfsamhgslvtsslirettenesanygykfgqeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgiwftalgvstmafnlngfnfnq 304
                 +gvag++gg+l++a+hg+ v  +l  +  ++  +  ++   q eety +v+a  ++ + if   +f n r lhff+   pv g+w +a+gv  +a+nl  ++f  
  MMETSP1174-20130828|5364_1   1 MGVAGILGGALLCAIHGATVENTLFED-GDAANTFRAFTPTQSEETYSMVTANRFWSQ-IFGV-AFSNKRWLHFFMLFVPVAGLWTSAIGVVGLALNLRAYDFVS 102
                 69*******************999855.566777889999************988775.7775.69***********************************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 635.20
//
Query:       MMETSP1174-20130828|5371_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|5372_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|5374_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|5378_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|5376_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   16.9   0.0     0.0079   13.1   0.0    2.0  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.9e-06    0.0079      94     188 ..      13     105 ..       2     125 .. 0.74
   2 !    2.0   0.0    0.0046        19     256     317 ..     133     192 ..     126     194 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.9e-06
   TIGR01293  94 glsrkhiieglkaslerlqleyvdivlanradpsspmeevvramtyvinqglalywgtsrwsa...veimeaysvarqfnlippiveqaey..hlfqrek 188
                 gl    +  +++ s+  lq+ y+div+++ + p   + +  +++  +++ g     g s +      e+mea  ++r      p v+q e    +f r+ 
  MMETSP1174-20130828|5376_1  13 GLGGDAVRSSVERSMAELQVTYLDIVYVHWPVPDKHV-DAYKSLEGLVESGHIRTIGLSNYRVkdyQELMEAGVNVR------PAVNQIEVnpFMFRRDV 105
                 56666677788999999*****************999.89999********99999999886412257888877666......44555443114555555 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0046
   TIGR01293 256 laalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvlelda 317
                 +aala k g ++ q+ + w  ++    ++l  + + e++ ++l++      lss+ +  lda
  MMETSP1174-20130828|5376_1 133 VAALAAKYGKAPGQILLRWGAQHG--LALLPKSVNPERMEQNLQCYSDDFSLSSQDMGILDA 192
                 5799***************99875..467888889999*****9999999999998877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 848.50
//
Query:       MMETSP1174-20130828|5377_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   59.0   0.2    2.1e-16   58.1   0.1    1.5  1  TIGR00004 TIGR00004: putative endoribonuclease L-PSP
    1.9e-09   35.6   0.2    2.7e-09   35.1   0.1    1.2  1  TIGR03610 RutC: pyrimidine utilization protein C


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1     1e-19   2.1e-16      15     123 ..      79     181 ..      72     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 1e-19
   TIGR00004  15 pYsqavkvgnllfvsGqipldpetgelveegdveeqaeqvlenlkaileaaglsledvvkvtvflkdlndFaevnevyakyfk.eekpaRsavevaaLPk.dvkvEieaia 123
                  Ys+av+++ +++++Gqi+ ++       +gd+ +q+++vl+ l+++lea ++ +e+++ +tv l++++d a++n+v++++ + ++ paR+++e  +LP  +  vE+ ++a
  MMETSP1174-20130828|5377_1  79 QYSNAVSMNGIIYTAGQIASNT-------DGDIVAQSQEVLKKLQDLLEAHQSGMEEILTATVVLANISDAAAFNDVWDSWTRtDHLPARTILEG-KLPNeNNLVEVAIVA 181
                 6*****************8654.......4578899*********************************************98789*****9996.577526779999988 PP

>> TIGR03610  RutC: pyrimidine utilization protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   1.3e-12   2.7e-09       8     125 ..      64     182 ..      57     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.3e-12
   TIGR03610   8 pagtskplapfvpgtladgvvyvsgtlpldkdnnvvhvgdaaaqtrhvletikkvvetaggtlddvtfnsiflkdwadyaainevyaeyfpgek.paryciqvglvkpdalveiasvah 125
                  +  ++ ++ f p+ +  + v + g++    +      gd  aq++ vl+ +++++e+    ++++   +++l + +d aa n+v+  +   ++ par  ++  l + + lve+a va 
  MMETSP1174-20130828|5377_1  64 AQVKATKISRFQPSKQYSNAVSMNGIIYTAGQIASNTDGDIVAQSQEVLKKLQDLLEAHQSGMEEILTATVVLANISDAAAFNDVWDSWTRTDHlPARTILEGKLPNENNLVEVAIVAR 182
                 555556677777777777777777777777666677778899**********************************************9977655********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.22s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1174-20130828|5379_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 885.43
//
Query:       MMETSP1174-20130828|5380_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       450  (0.109703); expected 82.0 (0.02)
Passed bias filter:                      277  (0.067528); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 784.39
//
Query:       MMETSP1174-20130828|5388_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 910.72
//
Query:       MMETSP1174-20130828|5390_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|5389_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1761.11
//
Query:       MMETSP1174-20130828|5392_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 819.01
//
Query:       MMETSP1174-20130828|5398_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|5404_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1174-20130828|5405_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|5407_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1174-20130828|5408_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063    8.7   6.8      0.063    8.7   4.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.97    5.5   7.4       0.96    5.5   5.1    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.7   3.1e-05     0.063     725     970 ..     168     243 ..      54     255 .. 0.51

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.1e-05
   TIGR00927 725 tvtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgegg 970
                 +v  ap   ++gdq e    ++                                     +e ++ a+++++ + +  +k+e+ +e ++++++ ++                                                                                                                                       + + k++ek   + ++
  MMETSP1174-20130828|5408_1 168 AVRSAPDNAVEGDQSERVKKKKR-----------------------------------RKERNDDAKDRKKDKKQKHKKEEKLNEVQAKERKKDK---------------------------------------------------------------------------------------------------------------------------------------KPKHKKEEKRERDRND 243
                 12222222222222222111111...................................1122222222222222222222222222222222222.......................................................................................................................................2222222222222222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.1   0.00047      0.96     335     431 ..     149     240 ..      62     256 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00047
   TIGR00934 335 avrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenaypt 431
                 +  ++r++ ++ + + d   + +a+  ++ ve + ++  +kkk  k+r+ + k ++k + +k+ ++++ ++ +   a +++++++ + ++ee+ +  
  MMETSP1174-20130828|5408_1 149 PCVMRRKNGRGGSGEGDDAAVRSAP--DNAVEGDQSERVKKKKRRKERNDDAKDRKKDKKQKHKKEEKLNEVQ---AKERKKDKKPKHKKEEKRERD 240
                 4445555555555555555555555..3333333333333344444444444444433333333333332222...222222222222222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       417  (0.101658); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 807.65
//
Query:       MMETSP1174-20130828|5422_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   24.4   0.0    4.6e-06   23.9   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      7e-05   20.3   0.0    0.00011   19.6   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    9.1e-05   19.9   0.0    0.00014   19.3   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW
    9.1e-05   20.2   0.0    0.00016   19.4   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00013   19.1   0.0    0.00019   18.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   5.7e-09   4.6e-06      91     141 ..     154     207 ..     104     242 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5.7e-09
   TIGR01934  91 efieadae...eLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvi 141
                 ef+++d +   +Lpf+d+sfd+v +   +  +t+ +++ +e++RVl+p+g+ +i
  MMETSP1174-20130828|5422_1 154 EFVTSDLNqdpRLPFDDESFDVVNCVVSVDYLTQPREVFQEIYRVLRPQGKCLI 207
                 344444431117**************************************9876 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-07   0.00011      43     148 ..     110     206 ..     100     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.4e-07
   TIGR02752  43 vqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklen.velvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvv 148
                 ++ g+++ld+c     w   l e++ + g+v gl +  + l+  +    + +l++ v+    +  +lp++d+sfd v     +  + +  +v++e++rv++p gk  
  MMETSP1174-20130828|5422_1 110 LRSGSDVLDICS---SWISHLPEKL-PLGRVAGLGMNAEELA--R----NDRLTEfVTSDLNQDPRLPFDDESFDVVNCVVSVDYLTQPREVFQEIYRVLRPQGKCL 206
                 567888888884...5887887776.6788888887655543..2....22233203333345679**************************************964 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-07   0.00014      10     117 ..     109     217 ..     103     244 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.7e-07
   TIGR02081  10 lipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGveviqqdldegLea.fedksfDvvvlsqtlqavrnteeiLdellRvgr...kaivsfPnfgywrv 117
                  ++ gs vLD+ +   + L       +v g G++  +e+ la   r  e +  dl+++  + f+d+sfDvv    ++  + +++e+ +e+ Rv r   k+++sf n  +   
  MMETSP1174-20130828|5422_1 109 ELRSGSDVLDICSSWISHLPEKLPLGRVAGLGMN--AEE-LARNDRLTEFVTSDLNQDPRLpFDDESFDVVNCVVSVDYLTQPREVFQEIYRVLRpqgKCLISFSNRCFPTK 217
                 5677788888766543333333344455555554..444.4556788899999**9997755****************************999765559******9776544 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     2e-07   0.00016      81     133 ..     153     208 ..     101     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2e-07
   TIGR02072  81 vqficgdiek...lplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                  +f+  d+++   lp+ ++sfD++ + +++  l +++ev++e++rvl+p+G  ++s
  MMETSP1174-20130828|5422_1 153 TEFVTSDLNQdprLPFDDESFDVVNCVVSVDYLTQPREVFQEIYRVLRPQGKCLIS 208
                 456666665333399************************************87776 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.4e-07   0.00019     114     167 ..     170     223 ..     140     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.4e-07
   TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpggilflstinrtlksyllaivl 167
                 +esfDvv ++  ++  ++++e+ +e+ ++l+p+g+ ++s  nr + + ++a++l
  MMETSP1174-20130828|5422_1 170 DESFDVVNCVVSVDYLTQPREVFQEIYRVLRPQGKCLISFSNRCFPTKAVAMWL 223
                 578****************************************99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 699.31
//
Query:       MMETSP1174-20130828|5428_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 310.56
//
Query:       MMETSP1174-20130828|5427_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 733.70
//
Query:       MMETSP1174-20130828|5419_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2375.80
//
Query:       MMETSP1174-20130828|5430_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|5432_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1174-20130828|5437_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   18.1   0.0    0.00017   17.9   0.0    1.1  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases


Domain annotation for each model (and alignments):
>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.1e-08   0.00017       8      78 ..      17      88 ..      10     123 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.1e-08
   TIGR00358  8 qalpekkekvkGvvkatekgfgFlrvddddkkdyfippeql.kkvlhGDlvlaqilskkekerreaevvril 78
                q+  +  ++ + +v   +k +gF+r  d +  d+f ++++l ++v  GD + + i++  ++++++a  +++ 
  MMETSP1174-20130828|5437_1 17 QKTFTGRQRGQVKVLFPDKRYGFVRYGDRSTRDLFFHFNELpQQVEAGDELSFIIADDRKTGKKKASEIQLT 88
                444444455555666789***********************456678***************9999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1113.11
//
Query:       MMETSP1174-20130828|5439_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 512.12
//
Query:       MMETSP1174-20130828|5441_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 663.72
//
Query:       MMETSP1174-20130828|5444_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   22.5  35.1    5.7e-06   22.2  24.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.9e-05   18.3  32.1     0.0001   18.0  22.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0087   12.1  17.2      0.012   11.7  11.9    1.1  1  TIGR03714 secA2: accessory Sec system translocase SecA2
  ------ inclusion threshold ------
       0.21    8.6   7.0       0.25    8.3   4.2    1.6  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
        5.5    3.0  19.7        6.7    2.7  13.6    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2  24.3   6.9e-09   5.7e-06     281     474 ..      26     219 ..       8     247 .. 0.50

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.9e-09
   TIGR02168 281 eeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeelee 474
                 +el+el++++ +  ++ + l++++e++ ++ +++e+e+++l+++ ++l  + e   ++++e +++ e l+e+l++ +a++   e++++ l+++++++e++ e+l+s   +l+ +l+++ ++++ ++a +++l+ +++  ++    +++  +++e++l+ +++ l++++ + e+l++ele++ e+l + e+e+++
  MMETSP1174-20130828|5444_1  26 NELTELRQTVLKKDKNDQLLKEQLEVAFQKIAESEEENAKLSRDNHQLFTDAEANLQNTEEEKKKNELLRERLAASAAKVRDCEKKIQSLTDKNRSQENHQEQLKSTNENLSYKLNQIPKQQQLIDAAKNKLAMTQKSYDDLHACHKQMTNDFEEKLQLTETALTTERSTTETLRKELEAASEQLTKFEAEVKN 219
                 34444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444555555555555555555555555555555555555555554443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0  22.2   1.2e-07    0.0001     287     480 ..      25     218 ..       3     257 .. 0.59

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.2e-07
   TIGR02169 287 eeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerie.ekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeele 480
                  +e +++++++ +   + + l+++++++ +++ ++ee++ak+  + ++l  ++e+  ++ eeekk+ e l e+l++++++ ++ +++++++  +++   +++++lk   e+l  +ln++  ++++l++ +k++ +  ++   +l++ + +  +++ee+l+  + ++ +++   e+l+++le+a+++l k ++e++
  MMETSP1174-20130828|5444_1  25 RNELTELRQTVLKKDKNDQLLKEQLEVAFQKIAESEEENAKLSRDNHQLFTDAEANLQNTEEEKKKNELLRERLAASAAKVRDCEKKIQSLTDKNRSQENHQEQLKSTNENLSYKLNQIP-KQQQLIDAAKNKLAMTQKSYDDLHACHkQMTNDFEEKLQLTETALTTERSTTETLRKELEAASEQLTKFEAEVK 218
                 456666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666.55555555555444444444444444303344555555555666666666666666666666666655555544 PP

>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  11.9   1.4e-05     0.012     551     703 ..      27     181 ..      12     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR03714 551 kykkkkekkeskekekallkrrvrkivekaqraseekaesareqtief.eeslkiqrekvYeernklleaedk.leeevkkiiedvlekvveekkleekedlvrfilenlsyklkevpkeldlkskeeikeylkeiaekeleekkkllkskkkae 703
                 + ++ +++  +k+k+ +llk++++  ++k  + +ee+a+ +r++   f +   ++q  +  +++n+ll++  + ++ +v++  +++ + + ++++ e++++ ++  +enlsykl+++pk+++l + ++ k  +++  +  l++ +k+++++ + +
  MMETSP1174-20130828|5444_1  27 ELTELRQTVLKKDKNDQLLKEQLEVAFQKIAESEEENAKLSRDNHQLFtDAEANLQNTEEEKKKNELLRERLAaSAAKVRDCEKKIQSLTDKNRSQENHQEQLKSTNENLSYKLNQIPKQQQLIDAAKNKLAMTQKSYDDLHACHKQMTNDFEEK 181
                 5555666677888999***************************99888245689**************98765145666676666666666788889999999***************************************9999999986543 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.2    0.0003      0.25     181     279 ..      99     197 ..      71     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0003
   TIGR00996 181 aalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspele 279
                 aa +++ +d ++ i++l +  +++ ++++ql+++++nl+  + q+ ++++ +d+a  +l+ + ++ +dl a +++  ++  ++L+ + t+l + +   e
  MMETSP1174-20130828|5444_1  99 AASAAKVRDCEKKIQSLTDKNRSQENHQEQLKSTNENLSYKLNQIPKQQQLIDAAKNKLAMTQKSYDDLHACHKQMTNDFEEKLQLTETALTTERSTTE 197
                 555677888899999999999***************************************999999999999988877777888888887777765544 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  13.6    0.0082       6.7     215     419 ..      20     231 ..       3     282 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0082
   TIGR00934 215 sdtsadesisslrfdeskekkkst..rvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrl.ersktidraeasdleeldrakdfqkmveknvkaakrkkknfk.....kreanlklfeksryakksdrneedngn.kkdasksnesee 419
                 sd  + +++  lr    k++k+++  +   e   +++ +++ + ++l r + +l    +a+a++++  +e+++ +  +++ +++++++++  k++ s ++ ++ ++++ ++l+ t+     k  ++ +++++id a+++   + +++ d +  ++++++++++k + ++     +r++   l+++ ++a++   + e++ +  ++ + s  s++
  MMETSP1174-20130828|5444_1  20 SDGDHRNELTELRQTVLKKDKNDQllKEQLEVAFQKIAESEEENAKLSRDNHQLF--TDAEANLQNTEEEKKKNELLRERLAASAAKVRDCEKKIQSLTDKNRSQENHQEQLKSTNENLSYKLNQIpKQQQLIDAAKNKLAMTQKSYDDLHACHKQMTNDFEEKLQLTEtalttERSTTETLRKELEAASEQLTKFEAEVKnDTKPPPSSDSRK 231
                 3444444444444444444433331122223333333444444555555555555..4444555555555566566666666777788888888888777777753333333333333333344441334566666655555555555555555555555544433333000003333333333333333333333222221222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       497  (0.12116); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 734.46
//
Query:       MMETSP1174-20130828|5449_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|5451_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 167.52
//
Query:       MMETSP1174-20130828|5454_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|5457_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 983.53
//
Query:       MMETSP1174-20130828|5462_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 278.64
//
Query:       MMETSP1174-20130828|5461_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|5466_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|5472_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|5473_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 882.44
//
Query:       MMETSP1174-20130828|5474_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 2146.56
//
Query:       MMETSP1174-20130828|5479_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.3   0.7      0.039   12.1   0.5    1.6  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   9.6e-06     0.039      22      90 ..      16      87 ..       9     100 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.6e-06
   TIGR03685 22 lkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaaaaaaeaaeee...keeeeeeeeeke 90
                ++ vl  aG++vde+  + ++ a  +   ee i+  a+ +       +    a++e+   ++e++ee+e+  
  MMETSP1174-20130828|5479_1 16 VEGVLRFAGIAVDEVSRRPMMEATAGASEEEGISLDAFEAELHQEHNTGRGGASQERqskSAENSEEDEDRT 87
                6789*****************************988887644443333332222222000222223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1324.78
//
Query:       MMETSP1174-20130828|5476_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   23.7   1.2    3.5e-05   21.4   0.2    2.2  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    0.00021   17.8   0.0     0.0018   14.7   0.0    1.9  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00032   17.8   0.0     0.0043   14.1   0.0    1.9  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0052   13.7   0.0      0.022   11.6   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0065   13.1   1.0       0.14    8.7   0.0    2.6  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   4.2e-08   3.5e-05     194     303 ..      76     203 ..      65     212 .. 0.69
   2 ?    0.7   0.2     0.087        72      89     122 ..     208     242 ..     179     249 .. 0.54

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.2e-08
   TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqknilr...d..........kltgkprgvafvrfnkreeaqeaisalnnvip.egg.sqpltvrlaeehgkakaahyms..klglikyg.eygtgnggva 303
                 + +y+t lp  +t+d+l+  fg  g++ +k   r   d            tgk +g a + ++  + aq a s +nn    +g  ++ +tv++ae +    a++     + g+++ g ++g+gn g++
  MMETSP1174-20130828|5476_1  76 SRIYITGLPPDVTEDELQQSFGMLGTVARKKQKRgypDqwpwkiniytDTTGKCKGDATLTYEDPNAAQSAPSFFNNTALrNGEpAKVMTVQMAEVKEVLPARVGGQsdNGGSYGSGgSHGGGNYGGP 203
                 679************************987655422222222111111479*************************9865155336789*****9877666655322114444443303344444444 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.087
   TIGR01659  89 slnslgsgg.sddndtrasgtnlivnylpqdmtdr 122
                 s  s g+g  +++ + ++  +nliv     d+++r
  MMETSP1174-20130828|5476_1 208 SGHSYGGGPdRNSSSRGNYRSNLIVASEEHDIQER 242
                 33334444202334445566788887777777777 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-06    0.0018     285     361 ..      64     153 ..      50     179 .. 0.64

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-06
   TIGR01642 285 klvnsktvldsedklyignLPldlkddqvkeLLesFGdL.........kaF......nl.iKdlatGlsKGyaFceykdssvtdlAiaaLnGi 361
                   v+sk++  s+ ++yi +LP d+++d    L +sFG L         +++      ++ i    tG+ KG a   y+d++ ++ A +  n  
  MMETSP1174-20130828|5476_1  64 SGVSSKVAESSNSRIYITGLPPDVTEDE---LQQSFGMLgtvarkkqkRGYpdqwpwKInIYTDTTGKCKGDATLTYEDPNAAQSAPSFFNNT 153
                 34889999999***************95...56677766221222221121211111222333457888888888888888888776666655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.2e-06    0.0043     180     259 ..      77     170 ..      66     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.2e-06
   TIGR01628 180 NlYvKnlddsvtedklrelFakfGeit..............SaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraq 259
                  +Y+  l+++vted+l++ F+  G +                + + +d  ++++g a + ye++++A++A   +n++ + + ++ k++ V+ a 
  MMETSP1174-20130828|5476_1  77 RIYITGLPPDVTEDELQQSFGMLGTVArkkqkrgypdqwpwKINIYTDTTGKCKGDATLTYEDPNAAQSAPSFFNNTALRNGEPAKVMTVQMAE 170
                 5899999999999999999999999972222222222222235677899999999999999999999999999999999988888888888765 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.13     1e+02     281     311 ..       1      30 [.       1      75 [. 0.54
   2 !   11.6   0.0   2.7e-05     0.022     216     297 ..      72     167 ..      48     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.13
   TIGR01622 281 lNGlelAGReikvglasDvteesdaslaskf 311
                 + G +l GR +kv   + + +   +  +s  
  MMETSP1174-20130828|5476_1   1 MSGQDLDGRRVKVEVQNSSAGGAGS-RLSGA 30 
                 7799999999999986665554444.33333 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.7e-05
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeie..............lvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlel.AGReikvglas 297
                   ++ ++Y+ +l  ++tE+eL+q F   G +               ++++  D  tG++kG   ++++d + a+ A   +N   l  G + kv  ++
  MMETSP1174-20130828|5476_1  72 ESSNSRIYITGLPPDVTEDELQQSFGMLGTVArkkqkrgypdqwpwKINIYTD-TTGKCKGDATLTYEDPNAAQSAPSFFNNTALrNGEPAKVMTVQ 167
                 35679*************************97222222222222223555555.5789999999999999999999888887666357777776655 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.2      0.16   1.3e+02     362     400 ..       9      48 ..       2      71 .. 0.72
   2 !    8.7   0.0   0.00017      0.14      59     128 ..      76     159 ..      68     170 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.16
   TIGR01648 362 pakkgsirgrgrgaagsraaGvrGlglrGyeay.rglysg 400
                  + k ++++ + g+agsr +G+ G +++G e+  +g +++
  MMETSP1174-20130828|5476_1   9 RRVKVEVQNSSAGGAGSRLSGASGRHGGGDEDAkYGGGRR 48 
                 5677889999****************99987641444444 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00017
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGki..............yelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGr 128
                 + +++  +P d+ edel   f  +G +              +++ +  d  Gk +G a +t+ + ++a+ a    nn  +r+G 
  MMETSP1174-20130828|5476_1  76 SRIYITGLPPDVTEDELQQSFGMLGTVarkkqkrgypdqwpWKINIYTDTTGKCKGDATLTYEDPNAAQSAPSFFNNTALRNGE 159
                 56888899999999999888877776655555666666666899999***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 948.24
//
Query:       MMETSP1174-20130828|5486_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|5484_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.8   0.0      0.028   11.2   0.0    1.2  1  TIGR03171 soxL2: Rieske iron-sulfur protein SoxL2


Domain annotation for each model (and alignments):
>> TIGR03171  soxL2: Rieske iron-sulfur protein SoxL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-06     0.028     227     278 ..     166     217 ..     162     227 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.9e-06
   TIGR03171 227 akvpalihcdchgstydpykgaavltgptvrplpavilewdsstdylyaigs 278
                 a +p     + hg+ ydp +    ++g     l a  lew+ ++d + aig+
  MMETSP1174-20130828|5484_1 166 AGLPQHAINEIHGAWYDPSNPVVKMSGQLRGDLYAQFLEWEDAADLVLAIGT 217
                 55666666789***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1625.72
//
Query:       MMETSP1174-20130828|5491_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 174.23
//
Query:       MMETSP1174-20130828|5488_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    3.2  17.2       0.11    8.8   6.5    1.8  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.5   2.6e-05      0.11      81     190 ..     122     235 ..     114     249 .. 0.79
   2 ?   -1.0   0.6     0.024        99     106     156 ..     279     331 ..     234     380 .. 0.37

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 2.6e-05
   TIGR03319  81 lekrlkqkeekldrkk.eklekkeeelekkekeleekekeleekeee...leellkeqkeeLekisgltqeeAkellleeveeelkeeaaklikeieeeakeeadkkakeilal 190
                 le+rlk+k    ++   + ++k+e+++  +e+ l++  + lee+ee+   ++e+l+  +++L++i ++  ++  +l+l    + +++e  +  ++ +ee+ ++adk  +++l+l
  MMETSP1174-20130828|5488_1 122 LESRLKEKLSVNNEALwTVIKKEEQTIALHEHMLSRMDAMLEEQEEKarsVSEILAAASHHLDRIEAIKDQQVEDLILPADPTAVESEFLRAQRRETEELMATADKAVENLLSL 235
                 44555554444333331335777788889999999999999888776222567888999************************************************9999875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.024
   TIGR03319 106 lekkekeleekekeleekeeeleellkeqkeeLe..kisgltqeeAkelllee 156
                  e  + +++++++   +k+++l+ell +++ + +   i +  ++ A++ + ++
  MMETSP1174-20130828|5488_1 279 HEDVQGAVSKHQAATAQKSAQLKELLLDHTGQQDgiMIKEWIKDVARSYIPKH 331
                 23333333333333333333333333322222220012222233333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 1342.74
//
Query:       MMETSP1174-20130828|5496_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|5499_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1174-20130828|5498_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-49  160.7   0.0    2.3e-09   34.7   0.0    6.0  6  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0029        12      24      35 .]       2      13 ..       2      13 .. 0.90
   2 !   30.6   0.0   1.1e-11   4.6e-08       1      35 []      14      48 ..      14      48 .. 0.97
   3 !   29.0   0.0   3.8e-11   1.5e-07       1      35 []      49      83 ..      49      83 .. 0.95
   4 !   34.7   0.0   5.5e-13   2.3e-09       1      35 []      84     118 ..      84     118 .. 0.96
   5 !   27.7   0.0   9.7e-11     4e-07       1      35 []     119     153 ..     119     153 .. 0.96
   6 !   26.8   0.0   1.9e-10   7.7e-07       1      33 [.     154     186 ..     154     187 .. 0.98

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0029
   TIGR00756 24 deMkergivPda 35
                ++M+ rg++P++
  MMETSP1174-20130828|5498_1  2 ERMRQRGVEPNV 13
                58********96 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 1.1e-11
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                ++y++ is++ k g++e Al+l+ +M++rg++P++
  MMETSP1174-20130828|5498_1 14 ISYSAAISACEKGGQWETALQLLGLMRKRGVEPNV 48
                59*******************************96 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 3.8e-11
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                +++++ is++ k g++e A++++++M+++g++P++
  MMETSP1174-20130828|5498_1 49 ISFSAAISACEKGGQWETAIQVLESMRRNGVEPNS 83
                58999****************************95 PP

  == domain 4    score: 34.7 bits;  conditional E-value: 5.5e-13
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 ++yn+ is+++k g++e Al+l+d+M+++ ++P++
  MMETSP1174-20130828|5498_1  84 ISYNAAISACAKGGQWEMALQLLDKMRSCELEPNI 118
                 69*******************************95 PP

  == domain 5    score: 27.7 bits;  conditional E-value: 9.7e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ i ++ k gr  eAl+l+++M+ +g++Pd+
  MMETSP1174-20130828|5498_1 119 ISFNAAIEACRKVGRCQEALQLLHDMRLSGVKPDI 153
                 58*******************************95 PP

  == domain 6    score: 26.8 bits;  conditional E-value: 1.9e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivP 33 
                 v+y+t+i+ l k  ++++Alelf eM++ gi+P
  MMETSP1174-20130828|5498_1 154 VSYTTVIRTLEKDQQFDKALELFIEMEKLGIKP 186
                 79******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 928.48
//
Query:       MMETSP1174-20130828|5500_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-11   41.2   0.7    1.9e-11   41.2   0.5    1.7  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    5.1e-06   22.4   3.7    7.4e-06   21.9   2.6    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.6      0.27   5.6e+02      78     320 ..      76      96 ..      34     134 .. 0.51
   2 !   41.2   0.5     9e-15   1.9e-11     110     250 ..     285     437 ..     272     444 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.27
   TIGR00990  78 kdaekeaekkaeekkstapkaaavesadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeiletkpeklPsvtfvanylqsfraklrpagledsaeldeelgkGllqlglksleskadesyeeaarafeka 320
                  + +ke+++                                                                                                                                                                                                                              + ++a ++++k 
  MMETSP1174-20130828|5500_1  76 EQKDKETNE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLKDAKKVWDKR 96 
                 112222222..............................................................................................................................................................................................................................222222222222 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 9e-15
   TIGR00990 110 idessvvnlseeerkkyaakl...kekGnkayrnkdfdkaielyskalll.....ke..dPvy...ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldlt.assliddfrdeqsaqaverllkkfaeskakei 250
                 ++ +++++++e e+++ a +    k  Gn+ ++  ++ +a   y+ a+       ke  d +    ysnraac+  l++ +k + d+ + ++ +p +vk   rr  a   l +y +al  l  a+ l    +++++ q+ e    kfae k    
  MMETSP1174-20130828|5500_1 285 METATQAEVTEREKEELAGQAereKLCGNQSFGAHEYSQAAVHYTMAIDYashmeKEarDAMLcaaYSNRAACFLKLGQHDKALIDADQCIKANPAFVKGHFRRGLALHALHRYDEALPSLGkALELEKKTNKASIRQINEAI--KFAEVKFGKL 437
                 345678899999999987543211667*************99999999642222233335543344*****************************************************996378899999999999988764..8888886555 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   2.6   3.6e-09   7.4e-06     111     240 ..     291     429 ..     282     435 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.6e-09
   TIGR02917 111 delekksslddeeaaellalrglAaLglgeleeAqksleqA....laiapksleaklglAqlalaen.....kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatillee 240
                 +e+++ + ++ +++ae   l g+ ++g  e  +A   +  A     + ++++ +a+l +A+   a+      + d+a   +d+ ++a+p++v+ +  +g  l ++  ++eAl ++ ka+el+++ ++a +++++ +++ 
  MMETSP1174-20130828|5500_1 291 AEVTEREKEELAGQAEREKLCGNQSFGAHEYSQAAVHYTMAidyaSHMEKEARDAMLCAAYSNRAACflklgQHDKALIDADQCIKANPAFVKGHFRRGLALHALHRYDEALPSLGKALELEKKTNKASIRQINEAIKF 429
                 566777777888999999999*******9999999988765111167889999********9877755656699***********************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1258.11
//
Query:       MMETSP1174-20130828|5502_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|5497_1  [L=937]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.52
# Mc/sec: 2378.34
//
Query:       MMETSP1174-20130828|5493_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-68  225.2   0.7      1e-67  224.9   0.5    1.1  1  TIGR00279 L10e: ribosomal protein L10.e
  ------ inclusion threshold ------
      0.014   13.3   0.1      0.052   11.5   0.1    1.9  1  TIGR01164 rplP_bact: ribosomal protein L16


Domain annotation for each model (and alignments):
>> TIGR00279  L10e: ribosomal protein L10.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   0.5   5.1e-71     1e-67       1     168 [.       1     171 [.       1     175 [. 0.98

  Alignments for each domain:
  == domain 1    score: 224.9 bits;  conditional E-value: 5.1e-71
   TIGR00279   1 marrparcyrdrkkkpytrkeyikavPdskvriydlGnk...saefPvsvslvakelvqirenaleaarvaankyltrvaGrsayklkirvyPhhilrenkmatgaGadriqdGmrkafGkPvgtaarvkkgqkilsvrvkdekfevakealrraamklPvptkiviekgk 168
                 m rrparc r +k+kp+ +++y ++vPd+k+ri+d G+k   +++fP + +lv++e +qi++ aleaarva+nky+ + aG+++++++ r +Phh++r+nkm+++aGadr++ Gmr+++GkP+ +aar+ +gq i+svr kd++ +v+ ealrra++k+P+++ki+ + ++
  MMETSP1174-20130828|5493_1   1 MGRRPARCSRFQKNKPFIKSRYCRGVPDPKIRIFDCGHKkagVDHFPFVAHLVSDEKEQISSCALEAARVACNKYMIKFAGKETFHIRTRCHPHHVIRQNKMLSCAGADRLSTGMRHSYGKPMERAARIAIGQCIISVRSKDQHANVVIEALRRAKFKFPGRQKILRSTKW 171
                 789**********************************9989999*************************************************************************************************************************988887 PP

>> TIGR01164  rplP_bact: ribosomal protein L16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.5e-05     0.052      33     125 ..      52     160 ..      37     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.5e-05
   TIGR01164  33 lkalekawitarqieaarvaltravk.....rggklWirifpdkpvtkk......p...aetrmGkGkGsvekwvavvkpGkvlfelag..veeevarealklaasklP 125
                 l++ ek  i++ ++eaarva ++++      ++ ++  r  p+  + +       +   + t m +  G++    a++  G+ +  + +   + +v+ eal++a+ k+P
  MMETSP1174-20130828|5493_1  52 LVSDEKEQISSCALEAARVACNKYMIkfagkETFHIRTRCHPHHVIRQNkmlscaGadrLSTGMRHSYGKPMERAARIAIGQCIISVRSkdQHANVVIEALRRAKFKFP 160
                 56679999**************99742332234467777777765543211111121114566777789999999*******9999987557789999******99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1007.52
//
Query:       MMETSP1174-20130828|5504_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1151.90
//
Query:       MMETSP1174-20130828|5506_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 992.36
//
Query:       MMETSP1174-20130828|5509_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 893.46
//
Query:       MMETSP1174-20130828|5514_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-24   82.2   0.0    7.2e-24   81.9   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.8e-27   7.2e-24      37     125 ..      82     171 ..      65     172 .] 0.87

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.8e-27
   TIGR01982  37 kvskeear.keslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlA 125
                 k+ ++++   e +ge++r+ l +lGP+f+K GQ l+tR+D++p+ + +eL +Lqd+++p+++ +ar+ +eaelg p++elF+e++++PlA
  MMETSP1174-20130828|5514_1  82 KLRHIRGVsVEVRGEKMRQGLVRLGPAFVKSGQALATRPDVFPPVVCAELGKLQDRMAPYPTVTARALLEAELGAPIDELFEELSDEPLA 171
                 3333333337789****************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 908.09
//
Query:       MMETSP1174-20130828|5512_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1295.45
//
Query:       MMETSP1174-20130828|5515_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   14.1   2.8      0.018   12.6   1.7    1.9  1  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.7   4.4e-06     0.018       1      41 [.      16      58 ..      16      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.4e-06
   TIGR03804  1 GIyLesssnnt.lenNtasnNsy.GIyLydSsnNtlsnNtasn 41
                G yL+++++   + +N + +    G +++   nNt++nN ++n
  MMETSP1174-20130828|5515_1 16 GLYLDNAASGYtIKGNVFRDAVTtGLFIHFGLNNTIENNVFFN 58
                788999888877***************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 914.82
//
Query:       MMETSP1174-20130828|5518_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|5521_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 579.05
//
Query:       MMETSP1174-20130828|5526_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|5520_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|5522_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-10   35.8   0.1    6.1e-10   35.3   0.1    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    8.4e-08   28.7   0.2    1.9e-07   27.6   0.0    1.6  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
     0.0093   12.5   0.1      0.018   11.6   0.0    1.4  1  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   4.5e-13   6.1e-10       7     157 ..      53     209 ..      47     214 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 4.5e-13
   TIGR04121   7 faargw.eprafQkevleaaeegesglliapTGaGKTlavflpsliela......akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaek.lf.kdlravvvDElHeLlgskR 157
                 +a++g  +p++ Q  +++ + +ges +++  TG+GKTla+ lpsl++l       +  ++k++ k+l + P + La++ +   +   + ++ +++  + +G + +s  a  +  ++++++ Tp  l + +++++a + ++ + ++++++DE+  L+  k+
  MMETSP1174-20130828|5522_1  53 LASQGVnAPTPIQDVTFAPVWRGESMVIHSETGSGKTLAMLLPSLTRLCneagndNGVSSKETNKMLILVPTRELATQHAVIARDLFSGIQHSVSLVI-AGQSLHS--AIAELPTATVIVATPVELCMAMAQDKALQeWLpRAVKVMILDEVDVLVPAKK 209
                 5566651478899999999*****************************966654434445588899***************99*****9999999876.4654444..4455667899**********9999887541444789*********9998886 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.4e-10   1.9e-07      23     106 ..      47     140 ..      26     203 .. 0.74
   2 ?   -2.7   0.0      0.19   2.6e+02     333     373 ..     470     510 ..     458     524 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.4e-10
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed..........pratalylaPtkalaadqlravkelee 106
                 + v + l+++G++ap   q  +    + Ge++v+   t sGk+la llP l++l ++            ++ l l Pt+ la+      ++l +
  MMETSP1174-20130828|5522_1  47 ERVATLLASQGVNAPTPIQDVTFAPVWRGESMVIHSETGSGKTLAMLLPSLTRLCNEagndngvsskETNKMLILVPTRELATQHAVIARDLFS 140
                 567778899*********99999999*****************************9966666665555999***********988877777766 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.19
   TIGR03817 333 vaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrr 373
                 v++ +a+  G+ + G+ +v i G    + ++   aGr+ r 
  MMETSP1174-20130828|5522_1 470 VVTDQAMTRGLHLDGIGSVFILGACANMDTYLHLAGRTARW 510
                 678899999*****************999999999999884 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   1.3e-05     0.018     262     321 ..      81     152 ..      76     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   TIGR00643 262 qGdVGsGKTvVavlallavi......esG......yqvalmaPTeiLAeQhyeklrelleplgievalLtgs 321
                   + GsGKT+  +l  l+ +      ++G       ++++++PT  LA+Qh+  +r+l++ ++ +v+l+ + 
  MMETSP1174-20130828|5522_1  81 HSETGSGKTLAMLLPSLTRLcneagnDNGvssketNKMLILVPTRELATQHAVIARDLFSGIQHSVSLVIAG 152
                 567899999999998887543322222222222225899************************999997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 1814.85
//
Query:       MMETSP1174-20130828|5527_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|5533_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 986.04
//
Query:       MMETSP1174-20130828|5537_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|5536_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.6   0.0       0.09   10.4   0.0    1.6  1  TIGR01451 B_ant_repeat: conserved repeat domain


Domain annotation for each model (and alignments):
>> TIGR01451  B_ant_repeat: conserved repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.2e-05      0.09      17      44 ..      66      93 ..      61      95 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.2e-05
   TIGR01451 17 titvtNtGnvtatnVvvtDiLPaGltfv 44
                 i v+N G+v+  +  + D+L++G ++v
  MMETSP1174-20130828|5536_1 66 RIRVRNDGEVDLAGLELLDFLDPGPVVV 93
                699*******************996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|5542_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|5538_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1174-20130828|5540_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1310.11
//
Query:       MMETSP1174-20130828|5544_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|5545_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|5547_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|5546_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|5549_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1071.44
//
Query:       MMETSP1174-20130828|5548_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       679  (0.165529); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.21s 00:00:00.92 Elapsed: 00:00:00.60
# Mc/sec: 670.94
//
Query:       MMETSP1174-20130828|5551_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-30  103.7   0.0    1.1e-28   98.4   0.0    2.0  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    2.2e-23   80.6   0.0    5.3e-15   52.9   0.0    2.0  2  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    9.3e-18   61.6   0.0    3.4e-09   33.3   0.0    2.0  2  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    4.1e-07   27.5   0.0    4.9e-07   27.3   0.0    1.1  1  TIGR01134 purF: amidophosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   1.1e-31   1.1e-28     118     272 ..       2     142 ..       1     150 [. 0.78

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 1.1e-31
   TIGR01536 118 erLeGmFAfalw....dekkgelflaRDrlGikPLYyase.qgkllfaSEiKallalk...eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaia 272
                 ++L+GmFAf l+    dek  + f+aRD++GikPLYy+s+ +g+++faSE+Kal+ +    +++a +++++ +++++l+  + ++  f+e  ++ p +                     + + +++e+re++++a+ kr++adv +g +lSGG+DS +v+  +
  MMETSP1174-20130828|5551_1   2 KHLDGMFAFCLFeegtDEKPATAFAARDPVGIKPLYYGSTeDGAFVFASELKALVGHVvpsTVRAVPPGHYWTPQTGLVRYHAPEWNFNE--DYAPWET--------------------KGNPSKDEIREAFKAAISKRMMADVDYGFFLSGGIDSCIVSHAL 142
                 68*********73333677889****************9999**************9877888888999999988888832222222221..2223222....................22334568********************************9765 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.2e-18   5.3e-15     117     170 ..       2      59 ..       1      70 [. 0.87
   2 !   26.8   0.0   4.2e-10   4.3e-07     202     277 ..      66     142 ..      58     149 .. 0.70

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 5.2e-18
   TIGR03108 117 erlrGmfafalw....drkketlflardrlgvkPlyyalledGalifgselkallahp 170
                 ++l Gmfaf l+    d+k  t f ard +g+kPlyy+  edGa++f+selkal+ h 
  MMETSP1174-20130828|5551_1   2 KHLDGMFAFCLFeegtDEKPATAFAARDPVGIKPLYYGSTEDGAFVFASELKALVGHV 59 
                 699********95555667789********************************9984 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 4.2e-10
   TIGR03108 202 kleaghtltlrrgeakaeprqy.WdvsfaaeaslseeeleeelierlkeavelrlvadvPlGaflsGGvdssavv.al 277
                  +++gh+ t ++g  + ++ ++ ++  +a+ ++ + +  ++e+ e +k a++ r++adv  G flsGG+ds  v  al
  MMETSP1174-20130828|5551_1  66 AVPPGHYWTPQTGLVRYHAPEWnFNEDYAPWET-KGNPSKDEIREAFKAAISKRMMADVDYGFFLSGGIDSCIVShAL 142
                 556666666666665554333214444554443.445678999****************************9986244 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.3e-12   3.4e-09     117     174 ..       2      63 ..       1      79 [. 0.76
   2 !   27.6   0.0   1.8e-10   1.8e-07     200     278 ..      64     140 ..      57     149 .. 0.68

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 3.3e-12
   TIGR03104 117 srleGmfafaiwerdsgr....lllardrlGikPlylaed.ekrlrfasslpallaaggvdtk 174
                 ++l Gmfaf+++e+ +++     + ard +GikPly+ ++ ++++ fas+l+al+    v ++
  MMETSP1174-20130828|5551_1   2 KHLDGMFAFCLFEEGTDEkpatAFAARDPVGIKPLYYGSTeDGAFVFASELKALVG-HVVPST 63 
                 699********99866542232799************76516799********984.344555 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.8e-10
   TIGR03104 200 vrklepatlltvekdGkleeksywsleakreaddaal..seedwkdavlealrlavkrrlvadvpvGvllsGGldssllva 278
                 vr ++p+++ t ++   +    y ++e + ++d a +    +  kd+++ea+++a+++r++adv+ G +lsGG+ds ++  
  MMETSP1174-20130828|5551_1  64 VRAVPPGHYWTPQTGLVR----YHAPEWNFNEDYAPWetKGNPSKDEIREAFKAAISKRMMADVDYGFFLSGGIDSCIVSH 140
                 555666655554444333....444444444444443003345689******************************98854 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.8e-10   4.9e-07     168     218 ..      23      76 ..       2      89 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.8e-10
   TIGR01134 168 klvavrDPvGvrPLvlgrkedg.yvvaSEsvAld..lgaelvrdvepgevvvlk 218
                 +++a+rDPvG++PL +g++edg  v+aSE  Al   +  ++vr v pg   + +
  MMETSP1174-20130828|5551_1  23 TAFAARDPVGIKPLYYGSTEDGaFVFASELKALVghVVPSTVRAVPPGHYWTPQ 76 
                 6789*************999998899*******87777788*******876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 580.75
//
Query:       MMETSP1174-20130828|5556_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1174-20130828|5554_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1037.71
//
Query:       MMETSP1174-20130828|5557_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 168.95
//
Query:       MMETSP1174-20130828|5558_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 823.93
//
Query:       MMETSP1174-20130828|5563_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1500.76
//
Query:       MMETSP1174-20130828|5564_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1091.45
//
Query:       MMETSP1174-20130828|5570_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|5571_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|5573_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|5572_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|5576_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-09   33.4  13.8     0.0018   15.9   0.1    5.8  5  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
  ------ inclusion threshold ------
      0.012   13.4   0.1       0.84    7.5   0.0    2.3  2  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.017        34       5      18 ..     105     118 ..     104     119 .. 0.88
   2 ?    3.0   0.0     0.011        22       7      16 ..     133     142 ..     132     147 .. 0.87
   3 !   15.9   0.1     9e-07    0.0018       6      21 ..     157     172 ..     155     177 .. 0.91
   4 !   15.9   0.1   8.9e-07    0.0018       6      20 ..     184     198 ..     181     200 .. 0.95
   5 ?    0.6   0.1     0.061   1.2e+02       6      13 ..     211     218 ..     210     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.017
   TIGR01376   5 ilFsnNsakgsGGA 18 
                 i Fsn ++++ GGA
  MMETSP1174-20130828|5576_1 105 IKFSNGYSEKEGGA 118
                 789999*******9 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.011
   TIGR01376   7 FsnNsakgsG 16 
                 F+nNsa + G
  MMETSP1174-20130828|5576_1 133 FNNNSAYEAG 142
                 9*****9876 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 9e-07
   TIGR01376   6 lFsnNsakgsGGAIya 21 
                 +F++Nsa+  GGA y 
  MMETSP1174-20130828|5576_1 157 TFESNSAAYDGGAVYV 172
                 8**************7 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 8.9e-07
   TIGR01376   6 lFsnNsakgsGGAIy 20 
                 +F+ Nsa   GGAIy
  MMETSP1174-20130828|5576_1 184 FFEANSASDDGGAIY 198
                 7*************9 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.061
   TIGR01376   6 lFsnNsak 13 
                 +F+ Nsa+
  MMETSP1174-20130828|5576_1 211 SFEANSAA 218
                 7******8 PP

>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0059        12       3      27 ..      73      99 ..      71     102 .. 0.81
   2 ?    7.5   0.0   0.00041      0.84      60      83 ..     137     160 ..     126     183 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0059
   TIGR01216  3 klevvtpekeiysg..evesvilpgse 27
                ++ ++++++ +++g  +v++++++ s+
  MMETSP1174-20130828|5576_1 73 NCVIMSSNGSVFDGqkDVQMIRVSRSS 99
                789*********85338****998765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00041
   TIGR01216  60 iavsgGflevepdkVtiLadeavr 83 
                  a  +G ++ve+++VtiL+ +++ 
  MMETSP1174-20130828|5576_1 137 SAYEAGAVYVEESNVTILSSTFES 160
                 56689**************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 945.21
//
Query:       MMETSP1174-20130828|5579_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 318.33
//
Query:       MMETSP1174-20130828|5582_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 157.26
//
Query:       MMETSP1174-20130828|5584_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 919.52
//
Query:       MMETSP1174-20130828|5590_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   0.0      0.029   12.0   0.0    1.0  1  TIGR00994 3a0901s05TIC20: chloroplast protein import component, Tic20 family


Domain annotation for each model (and alignments):
>> TIGR00994  3a0901s05TIC20: chloroplast protein import component, Tic20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.1e-06     0.029      33      99 ..      63     129 ..      38     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.1e-06
   TIGR00994  33 vpakdavsklrlsassieerkprelaslslsassdlllageenrlsrllPslrthkkskesaraakd 99 
                 +p+  +    r++as++  +  r +  + +s+++++  a++++ l +    l  h+k  e+ar +k 
  MMETSP1174-20130828|5590_1  63 LPEICSGILERIAASKSRVQGGRAWVGKVMSSGVKRDRAAKQDVLRQAQGRLTAHQKVAEAARRSKA 129
                 555555555688999999999******************************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1174-20130828|5593_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1174-20130828|5596_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|5597_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|5594_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-16   56.7   0.0    6.7e-16   56.3   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00012   19.1   0.0    0.00018   18.6   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00029   17.8   0.3      0.004   14.0   0.2    2.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   4.9e-19   6.7e-16       4     162 ..      53     223 ..      50     225 .. 0.86

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 4.9e-19
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp......gvtrdyvteqieedGktykvnllDTaGqedfdairrly..vreverslevvdivilvldveeglekqtkeiiheakkkgvpi..ilvvnKiDlkd.......dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  k+vivG+  vGKs+L + + + +  ++ +         v + y +e+    G  +++ ++D aGq  f+++++    +++++ ++ v+d+++   ++++++  +  +++  ++++++p+  +lv+nK+Dl+         ++++++  +ak++   ++e+sa + +n+d+ fk++
  MMETSP1174-20130828|5594_1  53 CKVVIVGDACVGKSALVQLFQQGS-YPKNYLMtswvdfSVKQIYLKEVNNHTG--VEMYIFDCAGQSIFNQVEENNsnFENASFVMVVYDVANK-ASFDNVK-TWLSKVRSRRPQNSAPLpgVLVANKVDLRRtdfdsraVISKEQGIQLAKSEDLHFFETSAAQQTNADAPFKYI 223
                 79****************999887.6666655456667888888888888888..89***************9987668999999999******.*******.********99977765544************99999666777888899999999**************99998 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-07   0.00018     210     347 ..      53     197 ..      34     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.3e-07
   TIGR00450 210 lklaivGktNvGKSSLlNallk....kdraiVsdikGttRDv.vEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd..eliitlkkkkk.......dlllvlNKiDLaeleilkselkltvsllsa 347
                  k++ivG++ vGKS+L+ ++ +    k+  + s +  + + + + e+ +  G+ + ++D AG     ++     +e  ++  ++a++v+ v D+ +    d+  + +++++ + +       + +lv NK DL  +++  + +  + + ++ 
  MMETSP1174-20130828|5594_1  53 CKVVIVGDACVGKSALVQLFQQgsypKNYLMTSWVDFSVKQIyLKEVNNHTGVEMYIFDCAGQ-SIFNQ-----VEENNSNFENASFVMVVYDVANKASFDNvkTWLSKVR-SRRpqnsaplPGVLVANKVDLRRTDFDSRAVISKEQGIQL 197
                 69*****************98733334556777788888886266677789***********3.34444.....4678999*************99987777423333322.2221112222469*********998888866655555544 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   2.9e-06     0.004     175     352 ..      52     234 ..      17     245 .] 0.67

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.9e-06
   TIGR03594 175 pikiaiiGrpNvGKStLvNallge...ervivsdiaGtTrDsidie.v.evkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlk..iaglile...eg..kalvivvNKwDlv.kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaik.evyeslskr 352
                 ++k+ i+G   vGKS Lv  + +    +  ++++       +i+ + v ++ g ++ ++D AG    +++ ++ve+       +  e+a  v++v D+ ++ s  + k  + ++ ++   ++   + v+v NK+Dl   d ++++ ++ke   +l++ +  +++ +SA ++++ +  ++ i  e ++++++ 
  MMETSP1174-20130828|5594_1  52 RCKVVIVGDACVGKSALVQLFQQGsypKNYLMTSWVDFSVKQIYLKeVnNHTGVEMYIFDCAG----QSIFNQVEE-----NNSNFENASFVMVVYDVANKASFDNVKtwLSKVRSRrpqNSapLPGVLVANKVDLRrTDFDSRAVISKEQGIQLAKSEDLHFFETSAAQQTNADAPFKYIAaEFHRKYQEV 234
                 579999999999999999777653222355555555555566654413256688899999999....455555554.....3456788999999999887665544431133332221112211456**********888899999999999**********************999998872444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 718.61
//
Query:       MMETSP1174-20130828|5600_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|5605_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 251.98
//
Query:       MMETSP1174-20130828|5606_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|5607_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1174-20130828|5602_1  [L=1488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.17s 00:00:01.07 Elapsed: 00:00:00.67
# Mc/sec: 2931.34
//
Query:       MMETSP1174-20130828|5609_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.1   0.1      0.049   10.3   0.0    1.3  1  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.2e-05     0.049     342     402 ..      49     110 ..      30     116 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.2e-05
   TIGR03447 342 wraala.aeeaeeaaelvaklreeladdldtpaalaavdewaaeakkeagsdseaaalvaea 402
                  r+ l+ ++  ++a++++++ +++l+ +l+tp ++a+++++ ++a   ++s+++ +a +  a
  MMETSP1174-20130828|5609_1  49 HRSVLQcNSLLDAARATIENSKSQLSPELQTPPSVAELEKYLEKAVLMGESSEQETAALIFA 110
                 455555345568899****************************9998887777766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 706.32
//
Query:       MMETSP1174-20130828|5611_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1683.75
//
Query:       MMETSP1174-20130828|5618_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|5617_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1198.90
//
Query:       MMETSP1174-20130828|5619_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|5620_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.81
# Mc/sec: 865.26
//
Query:       MMETSP1174-20130828|5625_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1174-20130828|5628_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|5629_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|5631_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|5632_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|5637_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|5641_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|5633_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.5   1.9      0.025   10.7   1.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
      0.075   10.6   8.0       0.13    9.8   5.5    1.3  1  TIGR00608 radc: DNA repair protein RadC
        2.8    4.9  10.9        4.2    4.3   7.6    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
        4.2    3.3  15.6        5.6    2.9  10.8    1.1  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
        8.3    2.8   7.9         12    2.3   5.5    1.1  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3   3.1e-05     0.025     339     419 ..      30     104 ..       7     302 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.1e-05
   TIGR00934 339 ersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksnesee 419
                 +r+ ++d  +++++e+l++++++q+m  +++++  ++++++++    +++ ++ +y+++ +++++++++++  +++  s +
  MMETSP1174-20130828|5633_1  30 QRDAMQDYKRETSEEYLAEQEQKQQM--EEFTKRMEQQQQLQQ----QQCQQQQQYQQQHQQQQQHQQQQQMMPHNIDSAN 104
                 12222222223333333333311111..111222222222222....2222233333333333333333333333333332 PP

>> TIGR00608  radc: DNA repair protein RadC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.5   0.00016      0.13      74     136 ..      50     112 ..      45     116 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00016
   TIGR00608  74 iqlkaivelakRlaksrvlekivirspeaaaeflskdlaheerEsfvvlfLdsknrliakevl 136
                  q + ++e +kR+ ++++l++   ++ ++ ++  +++ +h+++ +++   +ds nr+++++  
  MMETSP1174-20130828|5633_1  50 EQKQQMEEFTKRMEQQQQLQQQQCQQQQQYQQQHQQQQQHQQQQQMMPHNIDSANRMLRQQAF 112
                 5668899***************************************************98865 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.6    0.0051       4.2      75     158 ..      17     100 ..       2     116 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0051
   TIGR01347  75 eessaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaake 158
                  e++  ++ ++++++ + ++ + +++e++ +++e+k+++++ ++++ +++++++++ +++++ ++  +++++++++++  +++ 
  MMETSP1174-20130828|5633_1  17 FEGDLDENLTEAEQRDAMQDYKRETSEEYLAEQEQKQQMEEFTKRMEQQQQLQQQQCQQQQQYQQQHQQQQQHQQQQQMMPHNI 100
                 455555555666666777777788888889999999999999999999999999999987776665555555544444333222 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  10.8    0.0068       5.6     445     532 ..      18     103 ..       3     118 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0068
   TIGR03345 445 gaeeeerlaeleeelaaleeelaalearwekekelveeikelrekleeeeeeeaeeeealeaelaeleaelaelqgeeplvsaevdee 532
                 + + +e+l+e e +++a+++ ++++++++ +e+e  ++++e+ +++e++++ ++++  +++++ ++++++ ++ q++++++ +++d++
  MMETSP1174-20130828|5633_1  18 EGDLDENLTEAE-QRDAMQDYKRETSEEYLAEQEQKQQMEEFTKRMEQQQQLQQQQC-QQQQQYQQQHQQQQQHQQQQQMMPHNIDSA 103
                 555566666654.55667777788888999999999999999988855554444444.588899999999999999999999999865 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   5.5     0.014        12     139     227 ..      30      96 ..      12     121 .. 0.34

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.014
   TIGR00437 139 kgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkeseskls 227
                 +   +++ k++++ e+    +e+k++++e++k +e++++++++  +++q+                      +++ ++  + ++++++ 
  MMETSP1174-20130828|5633_1  30 QRDAMQDYKRETS-EEYLAEQEQKQQMEEFTKRMEQQQQLQQQQCQQQQQY---------------------QQQHQQQQQHQQQQQMM 96 
                 2222222222222.2222222222222222222222222222222222222.....................11111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1096  (0.267187); expected 82.0 (0.02)
Passed bias filter:                      448  (0.109215); expected 82.0 (0.02)
Passed Vit filter:                       109  (0.0265724); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.68
# Mc/sec: 658.00
//
Query:       MMETSP1174-20130828|5642_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|5643_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|5640_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 732.77
//
Query:       MMETSP1174-20130828|5647_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.5   0.0     0.0048   14.8   0.0    1.4  2  TIGR02596 TIGR02596: Verrucomicrobium spinosum paralogous family TIGR02596


Domain annotation for each model (and alignments):
>> TIGR02596  TIGR02596: Verrucomicrobium spinosum paralogous family TIGR02596
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-06    0.0048     108     157 ..      29      78 ..       5      98 .. 0.82
   2 ?   -3.1   0.0      0.37   1.5e+03      98     121 ..     111     134 ..     108     138 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-06
   TIGR02596 108 lledaeystllskkpvkslkdadavedaatevvafafkpdGgTnLprget 157
                 +  + +y+ l ++ pv+++ +a+ v+d++ ++ +f++  dG T L   ++
  MMETSP1174-20130828|5647_1  29 SSTKRKYTQLEAALPVPDTDEANRVDDQELTTRSFVLFRDGYTFLHGHDS 78 
                 456789***************************************98665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.37
   TIGR02596  98 evklleesvilledaeystllskk 121
                 e+ +l+es  ++++a +s    ++
  MMETSP1174-20130828|5647_1 111 EMMTLDESFRIVREAASSGCCYAQ 134
                 566788888888888877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 664.66
//
Query:       MMETSP1174-20130828|5646_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.88    6.9   7.9        1.1    6.6   5.5    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
          2    4.5  13.7        2.1    4.4   9.5    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
        5.4    3.1   7.4        5.6    3.1   5.1    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5   0.00079       1.1      25      84 ..      30     100 ..      13     109 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00079
   TIGR03593  25 pkpepqkppaaaqqaesqsaa......aaaaasaaaaasadapsaaaaaaaaaaa.....kritvktdvlr 84 
                 p++ep+++p+++ ++e +s++      + +++++ +++s++++s+++++++++ +     k  +++td++ 
  MMETSP1174-20130828|5646_1  30 PTNEPNANPTQTPTNEPSSNPtgeptnEPTSDPSLEPTSEPTKSSSSSTSSNSHStgnhkKNKAISTDDYV 100
                 44444555555555444444466665533444444444444444444444444448889999******996 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.5    0.0015       2.1     243     316 ..       4      78 ..       1     101 [. 0.67

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0015
   TIGR03835 243 qddseddyviddaeiissttlevtaqkeveqplqpepv.deetvaevkaeeesePvqtvetkpveavestveenl 316
                 +dd +dd   dd+ +++++t e t++   e + +p +   +e + +   e+  eP+   + +p++ +  +  +++
  MMETSP1174-20130828|5646_1   4 DDDDDDDDDDDDSTVTAAPTTEPTSEPTNEPNANPTQTpTNEPSSNPTGEPTNEPTSDPSLEPTSEPTKSSSSST 78 
                 56777778889999***********99999999999987444444555666666665555555555443333332 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.1    0.0041       5.6     326     417 ..      13      94 ..       1     112 [. 0.28

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0041
   TIGR02442 326 leekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaes............aeevalepagkifrvkllavskarargasGrrsktrsd 417
                  ++++ +a p+                     ep ++  +e++++ ++++ +e             +++ +lep++++++  + ++s+  +++++G+ +k ++ 
  MMETSP1174-20130828|5646_1  13 DDDSTVTAAPTT--------------------EPTSEPTNEPNANPTQTPTNEPssnptgeptnepTSDPSLEPTSEPTKSSSSSTSS--NSHSTGNHKKNKAI 94 
                 111111111111....................11111111111111111111110000000000001122233333333333333222..23344444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 532.67
//
Query:       MMETSP1174-20130828|5648_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|5652_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 809.77
//
Query:       MMETSP1174-20130828|5649_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.71
# Mc/sec: 968.54
//
Query:       MMETSP1174-20130828|5660_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|5671_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1174-20130828|5668_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-112  357.0   0.0    9.7e-09   32.8   0.0   14.9 15  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.3e-09   9.3e-06       2      35 .]       2      35 ..       1      35 [. 0.96
   2 !   32.5   0.0   2.9e-12   1.2e-08       2      35 .]      37      70 ..      36      70 .. 0.97
   3 !   24.5   0.0   9.7e-10     4e-06       1      35 []      71     105 ..      71     105 .. 0.97
   4 !   32.3   0.0   3.4e-12   1.4e-08       1      33 [.     141     173 ..     141     173 .. 0.97
   5 !   22.9   0.0   3.2e-09   1.3e-05       2      35 .]     177     210 ..     176     210 .. 0.95
   6 !   29.0   0.0   3.8e-11   1.6e-07       1      35 []     211     245 ..     211     245 .. 0.96
   7 !   21.5   0.0     9e-09   3.7e-05       1      35 []     246     280 ..     246     280 .. 0.96
   8 !   32.8   0.0   2.4e-12   9.7e-09       1      35 []     281     315 ..     281     315 .. 0.96
   9 !   29.2   0.0   3.1e-11   1.3e-07       1      35 []     316     350 ..     316     350 .. 0.96
  10 !   24.6   0.0   9.5e-10   3.9e-06       1      35 []     351     385 ..     351     385 .. 0.96
  11 !   14.0   0.0   2.1e-06    0.0087       2      35 .]     387     420 ..     386     420 .. 0.91
  12 !   25.9   0.0   3.7e-10   1.5e-06       1      34 [.     421     454 ..     421     455 .. 0.95
  13 ?   -0.1   0.0     0.065   2.7e+02      13      31 ..     468     486 ..     457     489 .. 0.75
  14 !   14.6   0.0   1.4e-06    0.0059      13      34 ..     503     524 ..     496     525 .. 0.93
  15 !    8.2   0.0   0.00015      0.63       7      34 ..     532     559 ..     527     560 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.3e-09
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                ++++ is++ k  ++e+A+el++eM+ +g++P++
  MMETSP1174-20130828|5668_1  2 SFSAAISACQKGMQWEKAVELLQEMQLHGVKPNV 35
                79999***************************96 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.9e-12
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                +y++ is++++ ++++++l++fdeM++rg+vP+a
  MMETSP1174-20130828|5668_1 37 SYSAAISACAQGNEWKKGLQIFDEMRSRGVVPNA 70
                8*******************************96 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 9.7e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ +s++ k ++ e++l+l++eM+++g++Pd+
  MMETSP1174-20130828|5668_1  71 ISFNAAMSACEKGRQREKVLQLMNEMQKSGLEPDV 105
                 58*******************************96 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 3.4e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivP 33 
                 +++n+ i++++k g++e+Al+l+deM+ +++vP
  MMETSP1174-20130828|5668_1 141 ISFNAAIDACAKGGQWEKALSLLDEMQQNDLVP 173
                 58****************************998 PP

  == domain 5    score: 22.9 bits;  conditional E-value: 3.2e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ++++ i ++ kag++ eAl l++ M+erg+ P++
  MMETSP1174-20130828|5668_1 177 SCSAAIAACEKAGKWQEALNLLRVMRERGVTPNV 210
                 89999***************************96 PP

  == domain 6    score: 29.0 bits;  conditional E-value: 3.8e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ is+++k  ++ +Alel+deM+ ++i Pd+
  MMETSP1174-20130828|5668_1 211 ISFNSAISACAKGSQWAKALELLDEMRTQKIDPDV 245
                 58*******************************96 PP

  == domain 7    score: 21.5 bits;  conditional E-value: 9e-09
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++++ is++ + g++e+Ale++  M+++g++P++
  MMETSP1174-20130828|5668_1 246 ISFSSAISACERGGQWEKALEVLIIMRRCGVEPNV 280
                 5899*****************************96 PP

  == domain 8    score: 32.8 bits;  conditional E-value: 2.4e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ is+++k g++ +Al+l+deM+ ++++P++
  MMETSP1174-20130828|5668_1 281 ISFNAAISACAKDGQWAKALDLLDEMQCNKLEPNV 315
                 58*******************************96 PP

  == domain 9    score: 29.2 bits;  conditional E-value: 3.1e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++++ i++++k g++e+Al + d+M++rg+ P++
  MMETSP1174-20130828|5668_1 316 ISFSAAINACAKGGEWEKALLIIDDMQARGVDPNV 350
                 58999****************************96 PP

  == domain 10    score: 24.6 bits;  conditional E-value: 9.5e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ i +++k g+ + Alel+++M+ +g++P++
  MMETSP1174-20130828|5668_1 351 ISFNSAIAACSKGGQSKTALELLRKMRGHGLKPNV 385
                 58*******************************96 PP

  == domain 11    score: 14.0 bits;  conditional E-value: 2.1e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 ++++ +++++  +++ + +e+++eM+++ + P++
  MMETSP1174-20130828|5668_1 387 SFSATMHACAADREWGKIFEILEEMRREQVHPNV 420
                 566669**************************96 PP

  == domain 12    score: 25.9 bits;  conditional E-value: 3.7e-10
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 vt+n+ +++++k+ ++e+Alel+deM+ +++  +
  MMETSP1174-20130828|5668_1 421 VTFNVALRACAKEAQPEKALELLDEMRQKDLPLN 454
                 79***************************99877 PP

  == domain 13    score: -0.1 bits;  conditional E-value: 0.065
   TIGR00756  13 agrveeAlelfdeMkergi 31 
                  + ++ +l l deM+  g+
  MMETSP1174-20130828|5668_1 468 GKAWKSVLCLVDEMETLGL 486
                 555688999*****99887 PP

  == domain 14    score: 14.6 bits;  conditional E-value: 1.4e-06
   TIGR00756  13 agrveeAlelfdeMkergivPd 34 
                 +g++e  + l+deM+++g++P+
  MMETSP1174-20130828|5668_1 503 EGQWEQTIHLLDEMQRQGLEPN 524
                 89*******************9 PP

  == domain 15    score: 8.2 bits;  conditional E-value: 0.00015
   TIGR00756   7 isglckagrveeAlelfdeMkergivPd 34 
                 ++++    +v +Al++ d M++r++ Pd
  MMETSP1174-20130828|5668_1 532 LRACRVGQQVTKALQIRDVMRKRNFTPD 559
                 677888889******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1818.87
//
Query:       MMETSP1174-20130828|5669_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1178.00
//
Query:       MMETSP1174-20130828|5673_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-23   80.8   0.0    2.4e-23   80.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   5.9e-27   2.4e-23       4     133 ..      19     140 ..      17     174 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 5.9e-27
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvk 133
                 ++i++vG +++GK+t+l++l+  +   t + p+++++++t  ++++   ++++++D++Gq++ ++++r+y++ ++++++v+d + + ++ve +  ++  ++ +e ++k+++++ ++nK+Dl d++k  + 
  MMETSP1174-20130828|5673_1  19 RRILLVGLDAAGKTTILYKLKLGE-TVTTI-PTIGFNVET--VTYKK--CTFTMWDIGGQDRIRPLWRHYYNGTDAVIFVIDSNDR-ERVEIAA-EELHKLMNEDEMKDAVLLCFANKQDLPDSMKAPEM 140
                 78**********************.77777.*******99..8**99..89***********************************.9999999.****************************5554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|5675_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|5676_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1174-20130828|5674_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1230.88
//
Query:       MMETSP1174-20130828|5683_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|5678_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1776.20
//
Query:       MMETSP1174-20130828|5684_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.0   4.1      0.021   12.6   2.8    1.2  1  TIGR03741 PRTRC_E: PRTRC system protein E
       0.19    8.4   2.9        0.2    8.4   2.0    1.0  1  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.8     1e-05     0.021      52      98 ..       8      56 ..       3      59 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1e-05
   TIGR03741 52 TpeELdegfa...ealkqyveareslaeqvaatravleaaaakeaeaaka 98
                T ++L+ ++    +a ++  +a  sl  +v+ +ravle a+ ++a+ +ka
  MMETSP1174-20130828|5684_1  8 TKADLETKLEelrQAHDAAKSASGSLHAEVESQRAVLE-AERASAANTKA 56
                888999877755588899999999**************.44445555554 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.0   9.8e-05       0.2      78     130 ..       5      57 ..       1      59 [. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.8e-05
   TIGR00998  78 aelalekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqaeld 130
                 a   ++ +e+kl  l++   +++  +  l+a+ves+++ le+ r+ + +++ d
  MMETSP1174-20130828|5684_1   5 AANTKADLETKLEELRQAHDAAKSASGSLHAEVESQRAVLEAERASAANTKAD 57 
                 56677889999999999999999999999999999999999999987776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|5688_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1174-20130828|5692_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 543.19
//
Query:       MMETSP1174-20130828|5693_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   24.4   0.0    8.9e-06   23.4   0.0    1.5  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.2e-09   8.9e-06      11      50 ..      84     121 ..      76     138 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.2e-09
   TIGR02381  11 nakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqf 50 
                 n +GfGfi +   +eD+f h s+i+ DG   L  G  v f
  MMETSP1174-20130828|5693_1  84 NDRGFGFIKPHDGGEDLFCHVSAIE-DGT-CLLEGSTVYF 121
                 789*********************7.664.4555666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 914.15
//
Query:       MMETSP1174-20130828|5696_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1174-20130828|5697_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-05   20.5   0.0     0.0001   20.0   0.0    1.2  1  TIGR00619 sbcd: exonuclease SbcCD, D subunit
    0.00011   20.1   0.1    0.00054   17.9   0.0    2.0  2  TIGR00040 yfcE: phosphodiesterase, MJ0936 family
    0.00094   16.5   2.2      0.014   12.6   0.1    2.2  2  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
     0.0018   15.6   0.1     0.0085   13.3   0.0    1.9  2  TIGR04168 TIGR04168: TIGR04168 family protein


Domain annotation for each model (and alignments):
>> TIGR00619  sbcd: exonuclease SbcCD, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-07    0.0001      38     121 ..      55     138 ..      25     146 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1e-07
   TIGR00619  38 eqvDallvAGDvFDkanPpaeaqelfaaflaklsdanp.lpivvisGNHDsa.drlsaakkllkelgvfvvgepeeeelildlkdt 121
                  q+D+l+ AGD   +++  +e+ + f++ + +l ++++ +++vv++GNH    +   ++++++++++ +v ++    + i+ l+d+
  MMETSP1174-20130828|5697_1  55 PQADILVHAGDF--TVRGASEEVQNFQNWMMRLLEQGKvKHVVVVAGNHELSfQPERSKHAVVRQRQEAVKASFAATPNIHYLEDG 138
                 489********6..7777888888888888888888888**********9551555566789999999999998888888888765 PP

>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.2e-07   0.00054       2      63 ..      33     103 ..      32     129 .. 0.71
   2 ?   -0.7   0.0      0.28   2.8e+02      86     118 ..     209     241 ..     199     247 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.2e-07
   TIGR00040   2 kilvlsDtHiperatelpvellkklsevdlvvhaGdlt.............sakvlkefedlaekviavrGnnDg 63 
                 ++l lsDtH+ ++   +p    +   ++d++vhaGd+t               + l e  ++++ v++v+Gn+  
  MMETSP1174-20130828|5697_1  33 RLLCLSDTHDFQQG--IPGGCDNLP-QADILVHAGDFTvrgaseevqnfqnWMMRLLEQGKVKH-VVVVAGNHEL 103
                 799*********85..555554444.88**********99*98888887553333444456667.9999999874 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.28
   TIGR00040  86 gdevvpkgdleslealakeldvDvlifGHtHep 118
                 g++   +   + l  ++ e +  v +fGH H  
  MMETSP1174-20130828|5697_1 209 GEKRCSRIGSRTLLERVIEIQPLVHVFGHYHPC 241
                 55555555566667777778888999***9965 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.4e-05     0.014      65     151 ..      57     148 ..      53     161 .. 0.63
   2 !    3.4   0.1     0.009       9.2     144     155 ..     232     243 ..     217     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
   TIGR04123  65 peelivlGDlfhdreaaerlelealael....relaaglevvlveGNHDr..akelpeelggevveelelgpltlrHepeeaeea.leiaG.HlH 151
                 ++ l+  GD+    +++e   +++++++     e+ +  +vv+v+GNH+   ++e+ ++  ++  +e+  ++++ + + +  e++  e++G H+H
  MMETSP1174-20130828|5697_1  57 ADILVHAGDFTVRGASEE---VQNFQNWmmrlLEQGKVKHVVVVAGNHELsfQPERSKHAVVRQRQEAVKASFAATPNIHYLEDGgCEVCGlHFH 148
                 566778888776666666...444444400004554555899*******7544444445555555556666666555555555555999998888 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.009
   TIGR04123 144 leiaGHlHPkvr 155
                 +++ GH+HP+++
  MMETSP1174-20130828|5697_1 232 VHVFGHYHPCYH 243
                 6899*****976 PP

>> TIGR04168  TIGR04168: TIGR04168 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   1.1e+02      34     202 ..      95     108 ..      62     141 .. 0.54
   2 !   13.3   0.0   8.3e-06    0.0085     138     223 ..     187     264 ..     155     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.11
   TIGR04168  34 avilGnHDawytatewgrdkspydrekedrlqkqldllgeahvgyskrdfpelelsvvgaRPfsaGGsefklskavkevfgvvsleesaerivaaakeaaeeplillaHsGPtGLGseaedpcGrDWkklggDfGDkDlaeaiaqirkkkkvpLvvFGHmHhrLrrtkk 202
                  v+ GnH+                                                                                                                                                           L  + +
  MMETSP1174-20130828|5697_1  95 VVVAGNHE-----------------------------------------------------------------------------------------------------------------------------------------------------------LSFQPE 108
                 22333333...........................................................................................................................................................333333 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 8.3e-06
   TIGR04168 138 illaHsGPtGLGseaedpcGrDWkklggDfGDkDlaeaiaqirkkkkvpLv.vFGHmHhrLrrtkkrlrktvvvdeegtvylnaAcv 223
                 +l++Hs P+G G+e ++++ +  +k     G + l e + +i+     pLv vFGH H   +++++    + ++ +  t+++naA+ 
  MMETSP1174-20130828|5697_1 187 VLVTHSPPYGQGDECSSIASQSGEKRCSRIGSRTLLERVIEIQ-----PLVhVFGHYHPCYHEGHG----VSTRRDLRTAFVNAATC 264
                 899********************************99999997.....45548*******999999....4444556699***9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1106.38
//
Query:       MMETSP1174-20130828|5704_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   63.9   1.8    2.1e-18   63.8   1.2    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    4.3e-11   39.0   1.1    4.8e-11   38.8   0.8    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   1.2     1e-21   2.1e-18     260     324 ..       6      70 .]       2      70 .] 0.94

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 1e-21
   TIGR01970 260 aaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraG 324
                 a +   kvvL+tn+aets+ti+ v +v+D+g  ++ ++d +  +t L+ + +s+a+a+qr+GraG
  MMETSP1174-20130828|5704_1   6 AGSHISKVVLSTNVAETSITIDDVVLVVDTGRVKEVSYDASRRITALQDVLVSRAAAKQRRGRAG 70 
                 445568**********************************************************9 PP

>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.8   2.4e-14   4.8e-11     333     391 ..      12      70 .]       6      70 .] 0.95

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.4e-14
   TIGR01967 333 rivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcG 391
                 ++vl+tnvaets+t+  +  v+dtG  +   y    ++  l    +s+a+a qr+Gr G
  MMETSP1174-20130828|5704_1  12 KVVLSTNVAETSITIDDVVLVVDTGRVKEVSYDASRRITALQDVLVSRAAAKQRRGRAG 70 
                 79*************************9999*9999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1174-20130828|5712_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|5713_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|5710_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|5711_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.33
# Mc/sec: 3039.75
//
Query:       MMETSP1174-20130828|5714_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 2165.45
//
Query:       MMETSP1174-20130828|5717_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1174-20130828|5716_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1174-20130828|5715_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-242  802.0   3.1     4e-242  801.7   2.2    1.0  1  TIGR01039 atpD: ATP synthase F1, beta subunit
   4.7e-171  567.2   0.7   5.6e-171  567.0   0.5    1.1  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    3.3e-67  224.9   1.6    4.4e-67  224.5   1.1    1.0  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    3.4e-66  221.5   0.7    4.4e-66  221.1   0.5    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.9e-65  219.1   1.7    2.4e-65  218.8   1.2    1.1  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    3.9e-63  211.4   2.6      5e-63  211.0   1.8    1.1  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    2.4e-62  209.0   0.4      3e-62  208.7   0.3    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    3.1e-38  129.3   1.1    2.6e-33  113.1   0.0    2.0  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    4.8e-36  122.0   2.9    6.3e-36  121.6   2.0    1.0  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    2.1e-33  113.6   2.1    2.7e-33  113.2   1.5    1.1  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    1.6e-32  110.7   2.0    2.2e-32  110.3   1.4    1.1  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    5.9e-32  108.8   2.4      4e-30  102.8   0.0    2.0  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    5.1e-27   92.3   1.2    4.7e-26   89.1   0.8    1.9  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    2.5e-08   31.0   0.0    2.3e-07   27.8   0.0    2.1  1  TIGR00767 rho: transcription termination factor Rho


Domain annotation for each model (and alignments):
>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  801.7   2.2  1.4e-244    4e-242       2     459 ..      29     494 ..      28     497 .. 0.99

  Alignments for each domain:
  == domain 1    score: 801.7 bits;  conditional E-value: 1.4e-244
   TIGR01039   2 kGkvvqvigavvdvefeesklpkiydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvld.........kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlpeqafylvGsieevveka 459
                 +G+v+qvigavvdv+f+ + lp i++al+v+ ++ + +lvlevaqh+G+ +vr+ia+d+t+Glvrg+evkdtg+pi +pvG+++lGri+nv+G+p+de+g++++++  +ihr ap f +q +++eil tGikv+dllapyakGGkiglfGGaGvGktv+i+elinnia++h+G+svfaGvGertreGndly+e++esgv++         k alvyGqmneppGar+rvaltglt+ae+frde+gqdvllf+dnifrftqaGsevsallGr+psavGyqptlat+mG lqeritst+kgsitsvqavyvpaddltdpapattfahldattvlsr+ia+lGiypavdpldstsr+ldp+vvGe hye ar  q++lq yk lqdiiailG+delse+dk++v+rark+++f+sqpf+vaevftG++G++v+l+dt++gf ++leG yd +pe+ fy+ Gs+++v++  
  MMETSP1174-20130828|5715_1  29 AGQVTQVIGAVVDVQFDGE-LPPILNALEVTVAEGEPRLVLEVAQHMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNHGGFSVFAGVGERTREGNDLYHEMIESGVIKvtadstagsKAALVYGQMNEPPGARARVALTGLTIAEFFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVVGETHYELARATQKLLQDYKGLQDIIAILGMDELSEDDKITVQRARKVQKFMSQPFTVAEVFTGTKGEFVPLADTLKGFGDLLEGTYDAVPESCFYMKGSMDQVLADY 494
                 69**************875.*************9988*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************98765 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.0   0.5  1.9e-173  5.6e-171       1     448 [.      30     489 ..      30     490 .. 0.96

  Alignments for each domain:
  == domain 1    score: 567.0 bits;  conditional E-value: 1.9e-173
   TIGR03305   1 gkvvavrgsivdvrfeeelpalysvlkagr...ekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvld.........ntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriattedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfftteqftglkgktvsledaldgcerilkdefedypekalymigeide 448
                 g+v+ v g++vdv+f++elp++ + l++     e  +v+ev++++ + +vr+ia+ ategl rg++vkd+gap+ +pvg ++l+r+++v g+++d+r +l+ ++   +h+  p +  +   se++ tgik++d+l+p  +ggk glfggagvgktv++ eli n+ +++ g s+f g+ger reg++ly em e+gv++         +  +v+gqmneppgar rv l+ lt+ae+frd++ +dvll++dnifrf qagsevs llg++ps +gyqptl+t++  l+eri++t++++its+qavyvpadd+tdpa   tf+hl a+ vlsr+ as g+ypa+dpl+sts+++ p++vge hy+lar  +++l +y+ l+diia+lg++els++d+ +v+rar++++f++qpf  +e ftg+kg++v+l+d+l+g   +l++ ++  pe+ +ym g++d+
  MMETSP1174-20130828|5715_1  30 GQVTQVIGAVVDVQFDGELPPILNALEVTVaegEPRLVLEVAQHMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNHGGFSVFAGVGERTREGNDLYHEMIESGVIKvtadstagsKAALVYGQMNEPPGARARVALTGLTIAEFFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVVGETHYELARATQKLLQDYKGLQDIIAILGMDELSEDDKITVQRARKVQKFMSQPFTVAEVFTGTKGEFVPLADTLKGFGDLLEGTYDAVPESCFYMKGSMDQ 489
                 799*******************99987654344889**************************************************************************9999999*******************************************************************************9852222222224579****************************************************************************************************************************************************************************************************************************************************9985 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   1.1   1.5e-69   4.4e-67       8     422 ..      13     442 ..       6     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 224.5 bits;  conditional E-value: 1.5e-69
   TIGR01026   8 lenllakeadleavkvvGrvkkvkgllieak..gpqasvGevclierkgsekkevvaevvg.fegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgkaldnveke.litapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkst.LlGmiar..ateadvnvialiGerGrevkef....iekdL...gee..glkrsvvvvatsDespllrlkgayvataiaeyfrd.qGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllk.aivseekkkavrkfrellskykenedLiri.GaYkkGsdkelDkaikkleklerflkqdi 422
                  ++  a+ ++ ++  + G+v++v+g +++ +  g    + +  +++  + e  ++v ev   + +++v   +++ +eg+  g++v  ++++++++vg++ lGr+++ +G+p+De+g  ld+++ + + ++ +  +++ k +e+l tG++++d l + +kG ++G+f G+GvGk + ++ +i    +++   +v a +Ger re ++     ie+ +    ++    +++ +v    +e+p +r + a+++ +iae+frd qG+dvll++D + rf +a  e++  +G  P++ Gy P+  + +  l er  +++kGsit++ +v v  DDl++P   ++ a lD   vLsr++a+ g+yPa+d l+s+sr+l  ++v+e +++++r  ++ll  yk  +d+i i G+ +   d ++  +++   k+++f++q  
  MMETSP1174-20130828|5715_1  13 ASSASARSFHASSAVFAGQVTQVIGAVVDVQfdGELPPILNALEVTVAEGEP-RLVLEVAQhMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERG-PLDTTHVApIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVvIMELINNiaTNHGGFSVFAGVGERTREGNDLyhemIESGVikvTADstAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDpRVVGETHYELARATQKLLQDYKGLQDIIAIlGMDELSEDDKI--TVQRARKVQKFMSQPF 442
                 5566677777888899**********98764227889999*****9887777.57777776156678999*********************************************9.9999999988888888899*************************************962578888764566789************8765111155432111223113468899***************************769*************************************************************************************************************99549***************************98455555556555..6899999****99965 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.1   0.5   1.5e-68   4.4e-66       5     407 ..      28     444 ..      24     457 .. 0.88

  Alignments for each domain:
  == domain 1    score: 221.1 bits;  conditional E-value: 1.5e-68
   TIGR02546   5 vlgrvtevsgtllkavlpear..vgelclikekekeseleaevvgfeedeal.LsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiargakad...vivlaLiGeRGRe....vrefiek.....elgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRd.qgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlk.kvvskehkkaaaklrellakykevellirl.GeYkkGsdkeaDkaikkldeikkflrqslde 407
                   g+vt+v+g ++ ++  +    + +  +++ +e e +l  ev     ++++   ++++++gl +g+ev  +g p  i vg++ LGr+++ +G+p+d++++l+++++   p+++++P  +   k +++l +G++++D l   ++G +iG+f++aGvGk+ ++ +++++ +++     v+a +GeR Re     +e ie+     + ++ + +++ lv    +++   r++ a+++ +iae+fRd qg++vll++D + Rf++a  e++   G  p++ gy p++ + +  l eR  +++kGsit++ +v v  dd +dp    + + lD   vLsr++a+ + yPa+D l s sR+l+ +vv + h++ a + ++ll+ yk ++++i + G  +  +d +    +++  +++kf++q  + 
  MMETSP1174-20130828|5715_1  28 FAGQVTQVIGAVVDVQFDGELppILNALEVTVAEGEPRLVLEVAQHMGESTVrTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVA--PIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNhggFSVFAGVGERTREgndlYHEMIESgvikvTADSTAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDpRVVGETHYELARATQKLLQDYKGLQDIIAIlGMDELSEDDK--ITVQRARKVQKFMSQPFTV 444
                 5799999999999999876541244445555678899999999886666555167999***********************************************988..********************************************************99655422289***********333334666652222256777889*******************************868**************************************************************************************************************9648***************************9725544444444..37999**********8765 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   1.2   8.3e-68   2.4e-65       1     399 [.      30     443 ..      30     452 .. 0.86

  Alignments for each domain:
  == domain 1    score: 218.8 bits;  conditional E-value: 8.3e-68
   TIGR03496   1 Gkltkvaglvleav..glkasvgelveieeeeg.esveaevvgfe.eeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlaratead...vvvvaLiGERgREvkefieknLge.........eglkrsvvvaatadespllrlraaalataiaeyfrd.qgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvm.kkvvseehlkaarklkqllsryeenrdlisigaYkk.GsdpelDeaiklvpklekflqqeve 399
                 G++t+v g v++++  g   ++ +++e++ +eg  ++  ev +   e+++  ++++ +egl+ g++v  + +  ++pvg++ lGr+++ +g+p+d++g+l++++ ++++++++  +++ + +e l +G+++++ l + +kG ++glf g+GvGK+v++  l+ + + +     v a +GER+RE +++ ++ +++         ++ +++ +v    +e+p  r r a +  +iae+frd qg+dvLl++D + Rf +A  e++  +G  p + gY p+  + +  L Er  +  ++kGsit++ +v v  dd +dp   ++ a LD   vLsR++a+ g+yPa+d ++S SR++ ++vv e+h+++ar  ++ll  y+  +d+i+i +  + ++d ++  ++++  k++kf++q ++
  MMETSP1174-20130828|5715_1  30 GQVTQVIGAVVDVQfdGELPPILNALEVTVAEGePRLVLEVAQHMgESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNhggFSVFAGVGERTREGNDLYHEMIESgvikvtadsTAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITS--THKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLdPRVVGETHYELARATQKLLQDYKGLQDIIAILGMDElSEDDKI--TVQRARKVQKFMSQPFT 443
                 7788888888766422567778888888776662455667776550556678999****************************************************************************************************988777776555422379***********876655544431111111114457899****************************846************************************************988..59********************************************************983689**************************99666551556655..799999******99765 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.0   1.8   1.7e-65     5e-63       1     400 [.      30     441 ..      30     454 .. 0.85

  Alignments for each domain:
  == domain 1    score: 211.0 bits;  conditional E-value: 1.7e-65
   TIGR03498   1 GrvsevkgllvevaGlsaavrlGdlveieaeeg.kkvlaevvg.leedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaD...vvvialvGeRGRevre....fleddl.....geeglkrsvvvvatsDesplmRrkaayvalaiaeyfRd.qgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRla.kkvlspeekklvkrlrallaryeetedlirlGayrk.GsdaevDeavklvpkieeflkqe 400
                 G+v++v g +v+v+   +   + + +e++++eg  +++ ev + + e++v  ++++ +eg   g++v  + ++ ++ + ++ lGR+++ +g p+D++g+l ++++  p++  +p  +++ + +e l tG++v+dl+++ ++G ++G+f G+GvGk++++  l+++ a++    +v a vGeR Re ++    ++e  +      +   +++ +v    +e+p +R + a + l+iae+fRd qg+dvll++D + Rf++a  e++   g  p a GY p+  +++  L eR    +++kGsit++ +v v +Dd ++P   ++ + lD   vl+R+ia  g yPa+++l s+sR+  ++v+ + + +l + +++ll++y+  +d+i + +  +  +d +    v+   k+++f++q 
  MMETSP1174-20130828|5715_1  30 GQVTQVIGAVVDVQFDGELPPILNALEVTVAEGePRLVLEVAQhMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHV-APIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNhggFSVFAGVGERTREGNDlyheMIESGVikvtaDSTAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERIT--STHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLdPRVVGETHYELARATQKLLQDYKGLQDIIAILGMDElSEDDK--ITVQRARKVQKFMSQP 441
                 677777777777776666666667777776666255677887626678999*************************************************98776.7889899999****************************************998888887665522279***********87611115554431111112234688999999***********************868************************************************98..689********************************************************87369999999********************99755554044444..4788889999999885 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7   0.3     1e-64     3e-62       1     396 [.      30     442 ..      30     455 .. 0.87

  Alignments for each domain:
  == domain 1    score: 208.7 bits;  conditional E-value: 1e-64
   TIGR03497   1 Gkvkkvvglvieak..gpkakiGelcsikk.keekkvlaevvgfkee.kvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl.lgmiarnak..adinviaLvGerGrevrefiekdLgeeGl..........kksvvvvatsdqpallrlkaalvataiaeyfrd.qGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvme.eivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkqki 396
                 G+v++v+g v+  +  g    i + ++++  ++e +++ ev     e +v  + ++ +eg+  g++v+ tg +++++vg++ lG++++ +G+p+de++++++++  p+++++p  +++ + ++ l +g+k++d l    kG ++G+f g+GvGk+++ + +i   a+      v a vGer re +++ ++ + e G+           k+ +v    ++p   r + al++ +iae+frd qG++vll +D + rf +a  ev+   g  P++ Gy p++ + +  l er  +++kGsit++ +v v +Ddl +P + +  + lD   vLsr++a+ + yPa+d l+s sr+++ ++v e h ela   ++ll+ yk  +d+i i  + + s+   + +++   k++kf+ q  
  MMETSP1174-20130828|5715_1  30 GQVTQVIGAVVDVQfdGELPPILNALEVTVaEGEPRLVLEVAQHMGEsTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVViMELINNIATnhGGFSVFAGVGERTREGNDLYHE-MIESGVikvtadstagSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDpRVVGETHYELARATQKLLQDYKGLQDIIAILGMDELSEDD-KITVQRARKVQKFMSQPF 442
                 899999999987642277888999999987466778999*9986655156678999**************************************************************************************************975155665554411579************9875433.22333311111111224678888999999999****************879**************************************************************************************************************96489***************************98888887543.3467899999***99965 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.6   5.5e-06    0.0016      27      91 ..      59     124 ..      29     127 .. 0.84
   2 !  113.1   0.0     9e-36   2.6e-33     186     500 ..     131     438 ..     123     455 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.5e-06
   TIGR01043  27 vkvgeekliGeiiriegdkaviqv.yeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91 
                 v  ge +l+ e+ +  g+ +v  +  + t+G+  g++v++tGap+++ +G   l++i + v  p+d
  MMETSP1174-20130828|5715_1  59 VAEGEPRLVLEVAQHMGESTVRTIaMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVD 124
                 566999************9998763678*****************************999988876 PP

  == domain 2    score: 113.1 bits;  conditional E-value: 9e-36
   TIGR01043 186 llqkwpvrkkrp.vkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslakwsdae...ivvyiGcGerGnemtevleefpeledpktG..kpllertvliantsnmpvaareasiytGitiaeyfrd.mGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireafl 500
                  ++  p+ ++ p ++++ + +e lvtG++++d l p akGG   + G+ G Gktv   +l +  +++     v+ G Ger  e  +  +e+ e   +k        +++ l+    n p  ar     tG+tiae+frd +G dv+l  d   r+++a  e+s+ l  +p+  Gy   la+ +    er        s+ ++gs+t v av  p  d+++p    t   +     l  ++a+   +pa++ l+s s   d       + v e + el + + +llq  + lq+i+ ++G d+l+e++k++++ ar +++ f+
  MMETSP1174-20130828|5715_1 131 TTHVAPIHRPAPlFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNhggFSVFAGVGERTREGNDLYHEMIESGVIKVTadSTAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERIT------ST-HKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDP------RVVGETHYELARATQKLLQDYKGLQDIIAILGMDELSEDDKITVQRARKVQK-FM 438
                 56667888888844678889999*********************************9999876555423389********99999999998887766544014456799*****************************967******************************************99999953......33.68******************************************************99885......568888889999999*********************************9975.33 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   2.0   2.2e-38   6.3e-36       5     413 ..      32     441 ..      29     449 .. 0.87

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 2.2e-38
   TIGR01041   5 iteikGplvlvekveeva.ydeiveielpdGekrrGqvldsseglvvvqv..fegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkdfektGale.........ravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqg 413
                 +t++ G +v v+ + e+    + +e+++++Ge r    +  ++g   v+   +++t+gl + +  v+ +G  + ++v    lGri+n +G+p+d+   + + +   i+  a   + +   +e + tGi  +d l    +G k+  f g+G+ +  + +++ ++  +  +   f+ vfa +G ++ e n + +++ ++G ++         +a+++    ++p+  r     + lt+ae++  e++  vl  + ++  +++a  e+sa    +p   Gy   l td+  l er      +kGsit +  + +p dd+t p p  t    +   vlsr++ + Giyp ++ l s sr+++     G+t  + +  +++l   y   + l+d++ai+G + lse d+  ++ a +  +kf++q 
  MMETSP1174-20130828|5715_1  32 VTQVIGAVVDVQFDGELPpILNALEVTVAEGEPRLVLEVAQHMGESTVRTiaMDATEGLVRGQE-VKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINN--IATNHGGFS-VFAGVGERTREGNDLYHEMIESGVIKvtadstagsKAALVYGQMNEPPGARARVALTGLTIAEFFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERIT--STHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPR-VVGETHYELARATQKLLQDY---KGLQDIIAILGMDELSEDDKITVQRARKV-QKFMSQP 441
                 677888888887766653256778999999*999766555555555555322689999988777.******************************999*********9988888899999*********************************9999887765..455566676.6999**99999999988888888775333333333778889999********9****************************************************************76..578**************************9*****************************98765.57999999999999999988...579999**************999998776.5788775 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   1.5   9.2e-36   2.7e-33      59     423 ..      67     441 ..      16     453 .. 0.83

  Alignments for each domain:
  == domain 1    score: 113.2 bits;  conditional E-value: 9.2e-36
   TIGR03324  59 llGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnq.kdknvlcvycaiGqrasavakvvaelrekgaldyt.........ivvvtegndppGlqyiapyaatsiaeyfm.eqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsr.....vGGkaqlaayravaGdlklayaqfeeleafarfg.arldeetrkvierGrrirailkqt 423
                 +l +a ++ e+ v ++ ++  + l  G+ev+ tg  + +pvGd  lGr+v+ +G p+d++++l++++  pi rpap  +d+   ++ l tG+kvvd l p  +G +  ++G    Gkt + ++ i n   ++    v+  +G+r+     +  e+ e g ++ t           v ++ n+ppG +     +  +iae+f  eqG+dvl+  d++ + ++a  e+s ll r p    +   +      l er t  +     Gs+t++  +   a +++   p+   +  d    ls ++ +lG+ pavd   s sr     v G +     ra   +l   y  ++++   a +g   l e+ + +++r r++++ + q+
  MMETSP1174-20130828|5715_1  67 VLEVAQHMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIaTNHGGFSVFAGVGERTREGNDLYHEMIESGVIKVTadstagskaALVYGQMNEPPGARARVALTGLTIAEFFRdEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTH----KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRmldprVVGETHYELARAT-QKLLQDYKGLQDII--AILGmDELSEDDKITVQRARKVQKFMSQP 441
                 56788899999************************************************************************************************************9999888852466789**********99888888887777776652222222225688999*******99999999******7489**********************************9999888888999988655....59************************************************999997222224455544444433.23333444444443..33441367788888888888887777765 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   1.4   7.3e-35   2.2e-32      59     424 ..      68     441 ..      24     449 .. 0.85

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 7.3e-35
   TIGR00962  59 kgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqy...........laPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqi.kaikkvaGslrlelaqyreleafsqf.a.sdldeatkkqlerGkrlvellkqe 424
                   +a+ + e++v  + +  ++ +  G+evk tg  + +pvGda lGr+vn +G+p+d +G+++++++ ++ + aP  +++   +e l tGik +d l P  +G +  + G    Gkt v ++ i n    ++    v+  +G ++    ++ +++ e+g ++ t    ++a   a+l y               +g ++ae+frd +g+d+l+  d++ + ++a  ++s ll r P    y   +      l er +       +Gs+t++  +   a+d++   P+   +  d    l+ ++   Gi Pa++   s sr+     +  +  ++a + +  l +y+ l+   +  +  +l e  k +++r +++ +++ q+
  MMETSP1174-20130828|5715_1  68 LEVAQHMGESTVRTIAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAT-NHGGFSVFAGVGERTREGNDLYHEMIESGVIKVTA--DSTAGSKAALVYgqmneppgaraRVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITS----THKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVVgETHYELARATQKLLQDYKGLQDIIAIlGmDELSEDDKITVQRARKVQKFMSQP 441
                 568889999************************************************************************************************************998887777666.558899*********99999999999999988765..3444444555552221111111156799********97479*********************************98888777788888764....4579******************************************************8776665144557777788888888888766543242458888888888888888888775 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.8    0.0055       1.6      25      90 ..      57     123 ..      29     127 .. 0.74
   2 !  102.8   0.0   1.4e-32     4e-30     190     500 ..     133     436 ..     126     463 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0055
   TIGR01042  25 elvrvgheelvgeiirlegdkatiq.vyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrpl 90 
                   v  g+  lv e+ +  g+++      + t gl  g++v+ tg p+++ +g   lg i + +  p+
  MMETSP1174-20130828|5715_1  57 VTVAEGEPRLVLEVAQHMGESTVRTiAMDATEGLVRGQEVKDTGAPITIPVGDATLGRIVNVVGDPV 123
                 4466788899999999888765433146899****************************99887776 PP

  == domain 2    score: 102.8 bits;  conditional E-value: 1.4e-32
   TIGR01042 190 qvwpvrsprpv.aeklaadtplltgqrvldalfpsvqggttaipgafgcgktvisqslsky..sn.sdvivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrd.mgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklike 500
                 +v p+ +p p  +++ ++++ l+tg +v+d l p  +gg + + g  g gktv+   l     +n     v+ g ger  e  ++ +++ e  v     + +   +++lv    n p  ar     tg+t+ae+frd +g++v ++ d   r+++a  e+s  l+ +p+  gy   l++ +  + er            +gs++ v av  p  d++dp  ++t++  +    l + +a    +p+v+ l s s+    l++      +   el + ++++lq+ + l++i+ ++g d l+e dkit++ a+ +++
  MMETSP1174-20130828|5715_1 133 HVAPIHRPAPLfVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNiaTNhGGFSVFAGVGERTREGNDLYHEMIESGVIKVTADSTAGSKAALVYGQMNEPPGARARVALTGLTIAEFFRDeQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERIT-------STHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRM---LDPRVV--GETHYELARATQKLLQDYKGLQDIIAILGMDELSEDDKITVQRARKVQK 436
                 678999999963688889999*******************************9887775541133134679**********99999999987665555555667789*****************************967******************************************99999864.......4579**************************************************999875...555332..2334567778899****************************99987654 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.8   1.6e-28   4.7e-26      27     421 ..      55     440 ..      31     452 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 1.6e-28
   TIGR01040  27 vnlkladgtvrkgqvlevs...gekavvqv.fegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengsl.........ervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaq 421
                 +++++a+g+ r   vlev+   ge +v  + ++ t g+ ++  +v+ tg  + +pv +  lgr+ n  g p+d+  ++ + +   i+  +     +    e++ tgi  +d +   a+g ki lf +ag+ +  +  +++ + +            ++  f+ vfa +g      + + +++ e+g +          +++l     n+p   r       lt ae++  e+++ vl+ + ++  +++a  evsa    +p+  g+   + td+  + er    +  +gsit +  + +p dd+t p p  t    +    + r++    iyp ++ l s sr++   +  g t  + +  +++l   y   +d+    a++g + ls++d++ ++   k + kf++q
  MMETSP1174-20130828|5715_1  55 LEVTVAEGEPRL--VLEVAqhmGESTVRTIaMDATEGL-VRGQEVKDTGAPITIPVGDATLGRIVNVVGDPVDERGPLDTTHVAPIHRPAPLFVDQGKSSEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAT-----------NHGGFS-VFAGVGERTREGNDLYHEMIESGVIkvtadstagSKAALVYGQMNEPPGARARVALTGLTIAEFFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERIT--STHKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRNIASLGIYPAVDPLDSTSRMLDPRVV-GETHYELARATQKLLQDYKGLQDI---IAILGMDELSEDDKITVQRARKVQ-KFMSQ 440
                 566667777664..566551114445544425677776.67788999***************************99999999999987766667788899*****************************9987665554443322...........223444.45555554444443444444444431111111114778999999*******9999999***********************************************************86..5689************************99999**************************9987653.558889999999999999776665...5789*************9998876.57776 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   7.9e-10   2.3e-07     152     385 ..     152     403 ..     112     425 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 7.9e-10
   TIGR00767 152 eeltt..rvldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrs.vkgevvastfd...............epasrhvqvaelviekakr.lvekkkdvvilldsitrlarayntvsPasGkilsGGvdatalhkPkrflGaarnieeGGsltiiatalvetGskmdevifeefkgtGnaelkldrklaerrvfPaidikksGtrk.eelllskeelekvwvlrkvls 385
                 e l t  +v+dl+aP  kG +  +      Gktv++ e+ n i++n+    ++   + er  e  d+  + +++ v+  t d               ep+    +va   +  a+  + e+++dv++++d i r+++a  +vs   G+i s    + +l     +l       + Gs+t + +  v +   +d      f    +a  +l+r++a   ++Pa+d   s +r  +  ++ ++++e     +k+l+
  MMETSP1174-20130828|5715_1 152 EILVTgiKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIATNHGGFSVF-AGVGERTREGNDLYHEmIESGVIKVTADstagskaalvygqmnEPPGARARVALTGLTIAEFfRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITSTHKGSITSVQAVYVPADDLTDPAPATTFAHL-DATTVLSRNIASLGIYPAVDPLDSTSRMlDPRVVGETHYELARATQKLLQ 403
                 333332389************99999*********************998765.689******9998654156777766666111111111111111555555555544444444313599****************************99877778899999999988888999******************9998888765.56678***************999998862444555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.75u 0.20s 00:00:00.95 Elapsed: 00:00:00.66
# Mc/sec: 1001.92
//
Query:       MMETSP1174-20130828|5718_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 972.32
//
Query:       MMETSP1174-20130828|5719_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2070.14
//
Query:       MMETSP1174-20130828|5720_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-21   74.5   0.0      2e-21   74.1   0.0    1.2  1  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    3.8e-17   59.9   0.0    5.1e-17   59.4   0.0    1.2  1  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
      2e-13   48.6   0.0    2.8e-13   48.2   0.0    1.1  1  TIGR00685 T6PP: trehalose-phosphatase
    3.6e-05   21.7   0.0    5.7e-05   21.1   0.0    1.4  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
  ------ inclusion threshold ------
      0.018   12.0   0.0      0.035   11.0   0.0    1.5  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   2.4e-24     2e-21     350     454 ..       4     108 ..       1     110 [. 0.97

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 2.4e-24
   TIGR02400 350 valyraadvalvtplrDGmNLVakEyvaaqedkkGvLiLSefaGAaeeLkeallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeL 454
                 +al+  +dv l  ++r+G+NL   Eyv+ ++++ Gv++ Sef    + L++al  np d +g+aea+++altm +eer++r ++ l ++++++++ W+++ l+++
  MMETSP1174-20130828|5720_1   4 MALWLSSDVLLNMSVREGLNLDHLEYVYVKDNNPGVVVASEFCSTVSVLNGALQTNPFDAKGIAEALDKALTMDDEERQSRRHRDLPYVNSNTSACWTRQILSDM 108
                 89******************************99*****************************************************************999875 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   6.3e-20   5.1e-17     374     480 ..       2     108 ..       1     115 [. 0.93

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 6.3e-20
   TIGR02398 374 elvaffaaadvawitplrdGlnlvakeyvaarglrdGvlvlsefaGaavelkgavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellaev 480
                 e +a +  +dv+    +r+Glnl   eyv  +  + Gv+v sef+ +  +l+ga+ tnp++ak + ea+++al+m +ee+q r +     v+ ++   w+ ++l+++
  MMETSP1174-20130828|5720_1   2 ERMALWLSSDVLLNMSVREGLNLDHLEYVYVKDNNPGVVVASEFCSTVSVLNGALQTNPFDAKGIAEALDKALTMDDEERQSRRHRDLPYVNSNTSACWTRQILSDM 108
                 556788899************************************************************************999999999*********99999876 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.4e-16   2.8e-13      26     249 ..     188     430 ..     177     431 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 3.4e-16
   TIGR00685  26 vsdellevLqkLaarsdvalaliSGRklleklllvk.lpglvlageHGlelka.dgkt......qdvseleek..ipvlkkaavelreelaey.pgvvlErKkvalalHYRqadpelarkrvkellekilsakddfdlkv..qdGkavvElkPrdvnKGeivkklleeadvsgisakdvvvyLGDDlTDedaFrvvr.....kleselGfksVki.dsaekktaAkfalagvaeVleflellv 249
                 +++ +   L kL++++++++ ++S     ++ +  k lp++ la++ Gl +++ +g +      +++ e + +    ++k++++ + +  +e+ +g+ +  ++ +la+ Y +adpe +  ++++l  ++  a + ++ +   ++    +E+ P d+ +G +v+ +l+  + s   + d+ + +G    De  F         + e e G  ++ + ++++++  Ak+ l++v e+ + le+l 
  MMETSP1174-20130828|5720_1 188 LPAAIERSLSKLSSDPNNLVVIVSTLTQKNLEAIFKhLPQVHLAASNGLMYTNvEGGVardsldRRWMETDTRldWRLVKEISLPILTAYTERtNGTTIRVREPSLAWSYFRADPEWGASQATQLTSELDIALEPYNAEAikNTDTNELEIMPMDFHRGVVVHDILQARKRSTDRPIDFFLIMGHHKKDEKIFSSTLsfvaeQTEMESGDPNIFLcTDTKRASIAKAYLEDVGEINHLLEILS 430
                 56788899***********9899999989988876549************99665543222222678888887655799**************99*********************************998888887654113345679**********************987777****************9866577767788999999988899999***************9999986 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.9e-08   5.7e-05      16     149 ..     187     326 ..     179     382 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.9e-08
   TIGR01484  16 elseelieaLerlrealgvkvvivTGRslaeikellkqlnl.elpliaengalieaqgeklyaealpedvaevllseeke.lkeieailksls.eryvgtfvedkalevaihysgqk.e....leqeldskllerlekigir 149
                 +l+++++  L++l+ +++  vviv+  +++ ++ ++k   l +++l+a+ng  + + ++++ +++l+++  e+ +++ ++  kei+  + ++  er+ gt+++ ++  +a++y +++ e      + l+s+l  +le + + 
  MMETSP1174-20130828|5720_1 187 SLPAAIERSLSKLSSDPNNLVVIVSTLTQKNLEAIFKH--LpQVHLAASNGLMYTNVEGGVARDSLDRRWMETDTRLDWRlVKEISLPILTAYtERTNGTTIRVREPSLAWSYFRADpEwgasQATQLTSELDIALEPYNAE 326
                 7899*********************************4..45*********************88777777777776665146677766666679999**************999887788875555555665666655544 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05     0.035     272     352 ..       5      87 ..       1     104 [. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.3e-05
   TIGR04047 272 aLvrlAdalafpslkEGfGLvvlEalAs..GvP..vvaselaPfteyldeeeavvadpsdpesladalaaaleeaarealaaagk 352
                 aL  + d+l  +s++EG  L  lE +      P  vvase    +  l  + a+ ++p d++ +a+al +al+  ++e+  ++ +
  MMETSP1174-20130828|5720_1   5 ALWLSSDVLLNMSVREGLNLDHLEYVYVkdNNPgvVVASEFCSTVSVL--NGALQTNPFDAKGIAEALDKALTMDDEERQSRRHR 87 
                 788899******************986422455436677776666666..88999*************99887666655444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 1692.57
//
Query:       MMETSP1174-20130828|5722_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   11.0   1.5       0.54    8.1   0.1    2.3  2  TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG


Domain annotation for each model (and alignments):
>> TIGR03293  PhnG_redo: phosphonate C-P lyase system protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.01        43      66      89 ..      54      77 ..      51      83 .. 0.89
   2 ?    8.1   0.1   0.00013      0.54      47      95 ..      84     157 ..      79     179 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.01
   TIGR03293 66 aavklndgtvGvayvlgrdkrhAe 89
                a++ l ++  G ++ lgrd++ A 
  MMETSP1174-20130828|5722_1 54 AQLALGNAYSGGGMGLGRDDKEAA 77
                788999999**********99986 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00013
   TIGR03293  47 grdggtgepFnLGEitvtraavklnd..........................gtvGvayvlgrdkrhAellAllD 95 
                 + +g  +++FnLG + vt + v  +                           +  G+++v + ++++ ++   +D
  MMETSP1174-20130828|5722_1  84 ADQGIPHAQFNLGTMYVTGSGVAQSYemavqwfmkaagqglaeaqlnlgsmyC-NGHGVVKDYSTALRWYGSAAD 157
                 667889************99887666666666666666666666666633322.366666655555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1174-20130828|5723_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   21.2   0.0      0.014   12.2   0.0    2.2  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
    2.9e-05   21.8   0.1       0.23    9.4   0.0    3.9  4  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
     0.0013   15.5   0.0     0.0052   13.6   0.0    2.0  2  TIGR03118 PEPCTERM_chp_1: TIGR03118 family protein
  ------ inclusion threshold ------
      0.035   11.1   0.0      0.053   10.5   0.0    1.3  1  TIGR03907 QH_beta: quinohemoprotein amine dehydrogenase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00055      0.57     126     151 ..      49      74 ..      16     108 .. 0.78
   2 !   12.2   0.0   1.4e-05     0.014      12     102 ..     132     226 ..     126     238 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00055
   TIGR03866 126 ePeGlavsPdgklvvntsettnmahf 151
                  PeG++vsPdg l v+      ++ f
  MMETSP1174-20130828|5723_1  49 SPEGITVSPDGWLFVASFLDSRIVSF 74 
                 59*********999987666665555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR03866  12 kiyvsnekdntisvidletlevvktlkvG.erPrGitlskdgkllyvcasdsdavqvldaeteevlk...elpsGedPelfvlepdgkllyiane 102
                 ++ vs   +n++  +d +t ++ + ++   e P G++l +d+++l+v++  s +v  +d++t e +    + p    P  + l +dg +l  a e
  MMETSP1174-20130828|5723_1 132 MLLVSSHYNNSVLALDPSTGTIEAVFQGPiEGPMGLALDRDKHTLFVTSYRSKSVTRFDVQTGEYTGiavRDPHLLGPSSMTLLEDGSMLVAAYE 226
                 45677888888888888888877777654367888888888888888888888888888888775431012333334555555555555555554 PP

>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0045       4.6       4      18 ..      16      30 ..      16      31 .. 0.89
   2 ?   -1.3   0.0      0.46   4.7e+02      33      42 .]      47      56 ..      45      56 .. 0.84
   3 !    9.4   0.0   0.00022      0.23       4      26 ..     131     153 ..     129     170 .. 0.83
   4 ?    2.2   0.0     0.038        39       5      23 ..     175     193 ..     172     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0045
   TIGR02276  4 tkvYVtNsgSnsVsV 18
                ++vYV++ gS+ + V
  MMETSP1174-20130828|5723_1 16 GHVYVASFGSDQILV 30
                58*********9876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.46
   TIGR02276 33 gsyPfgvavs 42
                  +P+g++vs
  MMETSP1174-20130828|5723_1 47 LDSPEGITVS 56
                579*****97 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00022
   TIGR02276   4 tkvYVtNsgSnsVsVIDtaTnkV 26 
                 + + V ++++nsV  +D++T + 
  MMETSP1174-20130828|5723_1 131 GMLLVSSHYNNSVLALDPSTGTI 153
                 5689***************9765 PP

  == domain 4    score: 2.2 bits;  conditional E-value: 0.038
   TIGR02276   5 kvYVtNsgSnsVsVIDtaT 23 
                 +++Vt+ +S sV+  D+ T
  MMETSP1174-20130828|5723_1 175 TLFVTSYRSKSVTRFDVQT 193
                 79**********9777766 PP

>> TIGR03118  PEPCTERM_chp_1: TIGR03118 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.1e-06    0.0052     219     281 ..      23      79 ..       5     100 .. 0.87
   2 ?   -1.4   0.0      0.19   1.9e+02     243     286 ..     161     199 ..     150     206 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-06
   TIGR03118 219 aGlGyvnafdlnGqllrrlassgalnaPwGlaiaPesfGslsgallvGnfGdGainafdaasg 281
                  G   + +f  +G++l  l  s++l++P G++++P++       l+v  f d +i+ f+ + +
  MMETSP1174-20130828|5723_1  23 FGSDQILVFSQKGEFLDALGGSDTLDSPEGITVSPDG------WLFVASFLDSRIVSFNLNDT 79 
                 56677889***************************86......58899999999999876654 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.19
   TIGR03118 243 lnaPwGlaiaPesfGslsgallvGnfGdGainafdaasgaflGq 286
                 ++ P Gla+  ++       l+v  +   +++ fd ++g++ G 
  MMETSP1174-20130828|5723_1 161 IEGPMGLALDRDK-----HTLFVTSYRSKSVTRFDVQTGEYTGI 199
                 5556666655443.....46788888888888899999988885 PP

>> TIGR03907  QH_beta: quinohemoprotein amine dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.2e-05     0.053       4      97 ..     134     223 ..     131     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.2e-05
   TIGR03907   4 lvvvarPnklfvvDlaerkvvktikipdafaPgtvavspDakvaYvlnnryedvvgidldsgkevfradlskaderakaifalalseDGkelyv 97 
                 lv   + n +  +D ++ ++ + ++ p + +P  +a+ +D+++ +v + r+++v+  d+++g+ +    ++  d +  +  +++l eDG  l +
  MMETSP1174-20130828|5723_1 134 LVSSHYNNSVLALDPSTGTIEAVFQGPIE-GPMGLALDRDKHTLFVTSYRSKSVTRFDVQTGEYT---GIAVRDPHLLGPSSMTLLEDGSMLVA 223
                 56677889999999999999998888765.69******************************965...56667777777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1174-20130828|5725_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 834.74
//
Query:       MMETSP1174-20130828|5727_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 781.51
//
Query:       MMETSP1174-20130828|5729_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 868.93
//
Query:       MMETSP1174-20130828|5728_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|5731_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.48
# Mc/sec: 1647.11
//
Query:       MMETSP1174-20130828|5733_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.3  12.3      0.014   13.4   1.1    3.0  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   2.4    0.0035        14      13      96 ..      55     147 ..      45     153 .. 0.80
   2 ?   13.4   1.1   3.4e-06     0.014      26     102 ..     403     483 ..     397     486 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0035
   TIGR00880  13 vvsplsglltdrvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagi 96 
                 ++  l g+l++r+G + +ll+ ++  ++    ++           s  + l++  +++G +aa +  a  a  +d i + ++++ lg+++a +
  MMETSP1174-20130828|5733_1  55 MITFLPGYLSQRIGARALLLCAIAATLILYGGLTYEyavgsivgaSPSWKLALYALFIGQSAAWVKMASIANTIDSIHPSTVGKCLGFIVASF 147
                 45566788999********999999999876665555566777777789999999999999999999999999*************9999866 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.4e-06
   TIGR00880  26 Grkpvllvglfifvlsqllfals....snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpil 102
                 +r+ +l+ + +i ++sqll+ ++    +  tvl++  i  G +++a+ + + a+  d++ +++++++ + l+a +al++++
  MMETSP1174-20130828|5733_1 403 ERTTPLVQTALIAAFSQLLLSVGhfitTDNTVLVFGLIGTGYATGAMNSLIVATSLDFYGRRKFARVWSELMALAALAVVI 483
                 79999999999999999999988333344579*********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.61
# Mc/sec: 1125.15
//
Query:       MMETSP1174-20130828|5726_1  [L=742]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 2225.82
//
Query:       MMETSP1174-20130828|5732_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-13   46.2   0.0    4.6e-13   45.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    7.7e-05   20.1   0.0    0.00013   19.4   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.2e-16   4.6e-13      19     187 ..     103     272 ..      90     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 2.2e-16
   TIGR03903  19 erlvaRFrReialCarLshPnivaL....lDsGe.aedgllFav....FeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaks.DlYaWGLivleCLtGkr 187
                   + +   Rei++ + L h n+ +L    lD     +dg+l  v     e+ +G  l + +   G+Lp     +  lq+L+++   h++Gv hRDLkP+ni++   d +   k+ DFG++a+ p  +        + +   G+  Y aPe L + +    s D+++ G++++  L G++
  MMETSP1174-20130828|5732_1 103 RSQSNYITREITAMQSLDHKNVLKLknaeLDVPYpRPDGMLREVilleLELAQGGELFNYILKCGPLPEPFARAYFLQMLEGIRECHSHGVFHRDLKPDNIVL---DGKFVLKLADFGLAAVNPSNNGS------LLNTNCGTTGYQAPEVLSNMAYEGSSyDVWSAGVVLFIMLVGHP 272
                 345556789*************99955556655424677776663333699**************************************************98...778889999*********98882......3333579************998776669*******999999986 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.2e-08   0.00013      65     139 ..     140     222 ..      81     228 .. 0.64

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 6.2e-08
   TIGR03724  65 ydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkks 139
                   + +e   + +e  +g +l +++ +           ++ ++ e + ++H++g+ h Dl + Ni+++++  l l DfGL+ ++
  MMETSP1174-20130828|5732_1 140 DGMLREVILLELELAQGGELFNYILKCGPlpepfarAYFLQMLEGIRECHSHGVFHRDLKPDNIVLDGKFvLKLADFGLAAVN 222
                 34444545555555665555444444333466666678888889999*******************655414589****9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 1635.52
//
Query:       MMETSP1174-20130828|5736_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|5734_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-93  310.3   0.0    2.6e-93  309.9   0.0    1.1  1  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
    3.5e-22   77.0   0.0    4.8e-22   76.5   0.0    1.1  1  TIGR01334 modD: modD protein
      0.006   14.6   0.0       0.01   13.8   0.0    1.3  1  TIGR00347 bioD: dethiobiotin synthase


Domain annotation for each model (and alignments):
>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.9   0.0   1.9e-96   2.6e-93       2     269 .]      72     344 ..      71     344 .. 0.98

  Alignments for each domain:
  == domain 1    score: 309.9 bits;  conditional E-value: 1.9e-96
   TIGR00078   2 lkealreDvgkedittealvkeeekaeaslvakeegvlaGlevaeevfeelegveveelvkdGeeleage......vvaelegdarslLlaERvaLNllqrlsgiAtatrklvealretn..vkiadTRKttPglrlleKyavrvGGgdnHRldLsdavliKdNHiaaagsvekavkraraalsfalkievEvesleeaeealeagadiilLDNmkpeeikeavellkekapsvlvEaSGgitldnveeyaetgvdvisvgalthsvkvlDlslki 269
                 +++++++Dv++ d+++  +v +e++ +a l+ k+ gvlaG+++++ vfe+l g++v++ +++ + ++++       +vae++g+ar +Ll+ER+aLN+l+r+sgiAt +r++v++++++     +a+TRKttPg+r++eKya+++GG+++HRldLs++v++KdNHi+ +g +++av+ ar+a++f+ kievEv+ l++a  a++agadi++LDNm+p+e+k+a+++ k + p+vlvEaSGgit+ ++++y++++vd+is g lt+ +  +D+slki
  MMETSP1174-20130828|5734_1  72 VQRWIHDDVPQFDVGG--FVVGEKNETAILYGKSYGVLAGVPFFNYVFEYL-GCTVTWFMEEQDIVDPSYaenrkvAVAEVKGPARLILLGERTALNTLSRASGIATSARNAVDKAQQQGwhGSVAGTRKTTPGFRVVEKYALLCGGAATHRLDLSQMVMLKDNHIWSTGDITSAVTLARKACGFSSKIEVEVSALADALTAAAAGADIVMLDNMDPSELKKAAKEFKVAYPHVLVEASGGITVATMHQYMSSDVDIISQGCLTQGYACIDFSLKI 344
                 89**************..688899999************************.8*************99988889989*****************************************99889*******************************************************************************************************************************************************97 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   3.5e-25   4.8e-22      43     260 ..     105     326 ..      72     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 3.5e-25
   TIGR01334  43 givsgvsvaakllkklglsidva.....vkeGsraeaGs.llleakgsadklhqgWkavqsvleWsaGvadytdkmvalakkisPaavvactrkaiPltrklaskavlaaGGlihraglsetllvfanhrtllsdnedisgaitrlkqqaP.ekkitveadtlkqalavlradPdilqldkftpqqvkelaellklldknitlavaGGinkenvaeylelGidlf 260
                 g+ +gv   + +++ lg ++        + + s ae  +  + e kg a  + +g +++ + l  ++G+a+   + v +a++   ++ va trk+ P+ r +   a+l +G   hr +ls+ +++  nh      + di+ a+t  ++      ki ve+ +l +al+++ a  di+ ld + p  +k++a+  k++ +++ + ++GGi   ++ +y+   +d++
  MMETSP1174-20130828|5734_1 105 GVLAGVPFFNYVFEYLGCTVTWFmeeqdIVDPSYAENRKvAVAEVKGPARLILLGERTALNTLSRASGIATSARNAVDKAQQQGWHGSVAGTRKTTPGFRVVEKYALLCGGAATHRLDLSQMVMLKDNHIWS---TGDITSAVTLARKACGfSSKIEVEVSALADALTAAAAGADIVMLDNMDPSELKKAAKEFKVAYPHVLVEASGGITVATMHQYMSSDVDII 326
                 5556666666666666655544300000344445554441456889999999************************************************************************99999654...56******98777654379*****************************************************************999987 PP

>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.6e-06      0.01      84     124 ..     283     323 ..     272     331 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.6e-06
   TIGR00347  84 idleelekklkeleekedfllvEgaGglavPlteeltvadl 124
                 +d +el+k  ke + ++ ++lvE+ Gg++v   ++++ +d+
  MMETSP1174-20130828|5734_1 283 MDPSELKKAAKEFKVAYPHVLVEASGGITVATMHQYMSSDV 323
                 677899******************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 1733.69
//
Query:       MMETSP1174-20130828|5735_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 665.45
//
Query:       MMETSP1174-20130828|5738_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|5741_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1178.90
//
Query:       MMETSP1174-20130828|5742_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1191.20
//
Query:       MMETSP1174-20130828|5746_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   10.8   0.1      0.072   10.2   0.1    1.2  1  TIGR00901 2A0125: AmpG-related permease


Domain annotation for each model (and alignments):
>> TIGR00901  2A0125: AmpG-related permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   1.7e-05     0.072      37      73 ..     108     143 ..     105     159 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.7e-05
   TIGR00901  37 lkflwsPllDqvrlkflgrRrsWlvltqvllllllli 73 
                 +k l + llDqv lk+  rRr Wlv+t  +l l+ l 
  MMETSP1174-20130828|5746_1 108 MKRLAAGLLDQVLLKVCTRRR-WLVATHSVLRLTALF 143
                 5778899********999887.*****9999876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1403.48
//
Query:       MMETSP1174-20130828|5744_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   28.1   0.1    1.9e-07   27.1   0.0    1.4  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.8e-06   24.8   0.0    4.6e-06   24.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   9.4e-11   1.9e-07      77     129 ..      22      71 ..       2      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 9.4e-11
   TIGR03903  77 paaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig 129
                 + ++   Lm q L al a hd  v+hRDLk +n++v a++v    k++DFG++
  MMETSP1174-20130828|5744_1  22 SEGQVKDLMYQLLSALEALHDGWVMHRDLKTHNVVVNAKGV---LKLIDFGLA 71 
                 5566778******************************9997...589****96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.2e-09   4.6e-06      92     138 ..      26      73 ..       2      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.2e-09
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  ++l++++  ++  lH+  ++h Dl t+N++v+ ++ l liDfGL+++
  MMETSP1174-20130828|5744_1  26 VKDLMYQLLSALEALHDGWVMHRDLKTHNVVVNaKGVLKLIDFGLARR 73 
                 3478888999999*******************7255567******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.48
# Mc/sec: 1946.84
//
Query:       MMETSP1174-20130828|5745_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.26s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1695.24
//
Query:       MMETSP1174-20130828|5749_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.4    4.2  14.4        0.9    6.7   0.9    2.1  2  TIGR04119 CXXX_matur: CXXX repeat peptide maturase
        6.4    3.3  10.7        0.3    7.7   0.2    2.1  2  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR04119  CXXX_matur: CXXX repeat peptide maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   4.0    0.0079        16     129     149 ..       6      26 ..       2      35 .. 0.81
   2 ?    6.7   0.9   0.00044       0.9     115     149 ..     100     135 ..      93     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0079
   TIGR04119 129 fklenaplCkeCdayqCkrCv 149
                 ++ +   +C++C a +C rC+
  MMETSP1174-20130828|5749_1   6 IRKQRCNICEACRASECGRCK 26 
                 5667889*************7 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00044
   TIGR04119 115 gslkdgik.ikneklfklenaplCkeCdayqCkrCv 149
                 gs + +i+ ++n+ l + +   +C +C a +C +C+
  MMETSP1174-20130828|5749_1 100 GSSDPTISgVDNSSLKRRQRCGICDACRAPECGKCK 135
                 555555551456689999999*********999996 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   3.5     0.057   1.2e+02      88     109 ..      12      33 ..       4      44 .. 0.78
   2 ?    7.7   0.2   0.00014       0.3      76     111 ..     106     141 ..      75     151 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.057
   TIGR03451  88 avcgecrackrgrpkycfdthn 109
                  +c  cra + gr k c++ + 
  MMETSP1174-20130828|5749_1  12 NICEACRASECGRCKNCLNMRK 33 
                 4788999999999999998765 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00014
   TIGR03451  76 vepgdyvvlnwravcgecrackrgrpkycfdthnae 111
                 +   d   l+ r  cg c ac+  +   c ++ n +
  MMETSP1174-20130828|5749_1 106 ISGVDNSSLKRRQRCGICDACRAPECGKCKNCLNMR 141
                 444567778999999999999987766666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|5751_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 225.48
//
Query:       MMETSP1174-20130828|5747_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 1728.63
//
Query:       MMETSP1174-20130828|5750_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1654.26
//
Query:       MMETSP1174-20130828|5752_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-88  293.3   0.0    2.7e-88  292.8   0.0    1.1  1  TIGR01020 rpsE_arch: ribosomal protein S5
    1.7e-23   81.0   0.6    1.7e-23   81.0   0.4    1.7  2  TIGR01021 rpsE_bact: ribosomal protein S5


Domain annotation for each model (and alignments):
>> TIGR01020  rpsE_arch: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.8   0.0   1.3e-91   2.7e-88       3     210 ..      65     271 ..      63     272 .. 0.97

  Alignments for each domain:
  == domain 1    score: 292.8 bits;  conditional E-value: 1.3e-91
   TIGR01020   3 aeleeWePktklGrlvkegkiksideifeeslpikeseivdvll.pdlneeevldvslvqkmtksGrrtrfralvvvGnkdGyvGlGkgkakevatairkaiakaklniikvrrgcGsWecklgkehsvPfkveGksGsvrvrliPaPkGvGlvagdvakkvlrlaGiedvytktkGetkttvnfakatfealkkty.lvkaaekkeekl 210
                 ++++eW+P tklGrlvke kiks++eif  s+pike++ivd++l ++l++ ev+ +++vqk+t +G+rtrf+a+v+vG+  G+vGlG+++akevatair+ai++ak+nii++rr  G W+ ++g++h+v  k +Gk+GsvrvrliPaP+G+Glva++ +kk+l +aG++d+yt+++G+t+t++nf+ka f al k y ++ ++ + e+++
  MMETSP1174-20130828|5752_1  65 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLgTKLKD-EVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRR--GFWGKQVGQPHTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMGNFIKACFFALAKSYgYLSPELWPETQF 271
                 6789****************************************777855.***************************************************************..9********************************************************************************9****99998876 PP

>> TIGR01021  rpsE_bact: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.6         1   2.1e+03      33      45 ..      33      45 ..      32      48 .. 0.89
   2 !   81.0   0.4   8.5e-27   1.7e-23       3     139 ..     111     256 ..     109     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1
   TIGR01021 33 GdkkGkvGfGvgk 45
                Gd++G+ GfG g+
  MMETSP1174-20130828|5752_1 33 GDRRGRGGFGRGR 45
                9*********997 PP

  == domain 2    score: 81.0 bits;  conditional E-value: 8.5e-27
   TIGR01021   3 eleervvkvnRvskvvkGGrklsfsalvvvGdkkGkvGfGvgkakevteaikkavekakknlikve......lleg..tikhevigksgaakvllkpakeGtGviaGgavravlelaGvkdilakslGsnnpi.nvvratldalek 139
                 +l++ v+ +  v k +  G++ +f+a+v vGd +G+vG+Gv  akev++ai+ a+  ak n+i +        + +  t++ +++gk g+ +v l pa +GtG++a  a++ +l +aG+ d ++ s G + ++ n ++a + al+k
  MMETSP1174-20130828|5752_1 111 KLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRrgfwgkQVGQphTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMgNFIKACFFALAK 256
                 68899999*******************************************************996332222122235778888899999**************************************99887589*****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1588.95
//
Query:       MMETSP1174-20130828|5756_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|5757_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|5758_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 2104.69
//
Query:       MMETSP1174-20130828|5760_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1720.75
//
Query:       MMETSP1174-20130828|5762_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   22.7   0.0    3.3e-05   21.9   0.0    1.4  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
     0.0013   16.0   0.0     0.0021   15.2   0.0    1.3  1  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.6e-08   3.3e-05      57     115 ..     209     264 ..     180     274 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.6e-08
   TIGR01575  57 eilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkei 115
                  +  ++v+p++qg GiG++ l e i+ a ++++  ++L  R +  + +++Y +lgf  +
  MMETSP1174-20130828|5762_1 209 SLKRMVVRPDKQGLGIGNQVLTEAIEMASSQNRG-VVLYTRGD--RNIKFYDRLGFDVV 264
                 567899**********************887666.99999976..678********876 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-06    0.0021     236     288 ..     215     264 ..     210     269 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1e-06
   TIGR03448 236 vdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtva 288
                 v+p+ qg G+G+ + +  ++ +++ ++r v+LY+ +d    ++ Y++LgF+v+
  MMETSP1174-20130828|5762_1 215 VRPDKQGLGIGNQVLTEAIE-MASSQNRGVVLYTRGDR--NIKFYDRLGFDVV 264
                 899********998888886.7888899*******995..599*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1080.88
//
Query:       MMETSP1174-20130828|5763_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-08   30.2   0.0    8.7e-08   29.7   0.0    1.2  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    0.00049   17.1   0.0    0.00085   16.3   0.0    1.3  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.2e-11   8.7e-08      40     254 ..      94     313 ..      64     320 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 4.2e-11
   TIGR00768  40 n.ekralaeldvvivri...vssdrglavlraleslGveviNssqaienagdKllssalLakaglplpktlvag.seeeakklieeig...fPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksggrdiRvfVvgdevvaaiyrikseefrsNlarGgkaekcelteeieelaikaakalg.ldvagiDllesedkg.llvlEvNas 254
                   +++ l + d+v+vr+   + + ++++ l  l + Gv+ iNs + i    +K+l  a+L + +  l + +    ++  +++  +++    fP+v+K    + G + + ++d++e e+    l ++ +  k      + + +   d R   +g +  a   r+ s+ +++N+   +  e +e++   ++ a  a+ ++g ld++ +D + +++ g   +lEvN +
  MMETSP1174-20130828|5763_1  94 RgQNKSLLDPDLVLVRNevtTPQASAINQLYGLMMGGVQGINSLSSIVSFTEKVLVQAELHRLNRELGDDVFPViEQCYFSDYRDMMYsqsFPAVVKIGSAHAGMGKMIIRDHHEFEDFRTVLAMTDG--KYCTAEPFLEGEY--DLRIQKIGPHYRAFKRRSVSGAWKTNTGT-AMLEAIEVNVVYRRWADEASVLFGgLDILTVDAIHDTATGkEFILEVNGT 313
                 3566788999*******9666677788888889999**************************99999887765425566677777766677************************************8..5566677887666..**********9998888*********965.7889****************999638***********97725899***76 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.2e-07   0.00085      44     253 ..      99     313 ..      87     337 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.2e-07
   TIGR02144  44 ekedldvaieRn.vsqsralasaall..eelGvkvinsseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeel....GyPvvlK..PveGsWGrlvskvkdkdeaeallehkevlkgsqlklylvqEyinkpgRDiRvfviGdeaiaaiyRvs.eewrtntArGgkaepvkvdeeveelavkaaeavgg.evvaiDivEskerGl.lvnEvndv 253
                 ++ d d+++ Rn v++ +a a+ +l+     Gv+ ins ++i+   +Kv+ +++L + +    + +  + ++   + ++++     +P+v+K   ++   G+++  ++d++e e +     ++ g+    y   E     + D+R+  iG +  a   R     w+tnt   +  e ++v+   ++ a  a+ ++gg  ++++D + +++ G   ++Evn++
  MMETSP1174-20130828|5763_1  99 SLLDPDLVLVRNeVTTPQASAINQLYglMMGGVQGINSLSSIVSFTEKVLVQAELHRLNRELGDDVFPVIEQCYFSDYRDMmysqSFPAVVKigSAHAGMGKMI--IRDHHEFEDFRTVLAMTDGK----YCTAEPFLEGEYDLRIQKIGPHYRAFKRRSVsGAWKTNTGT-AMLEAIEVNVVYRRWADEASVLFGGlDILTVDAIHDTATGKeFILEVNGT 313
                 55566666666436666666666665114569**********************999887766666555555444444433122278****9333455677887..89999999966666666554....444555556799********99887777765799****975.77899******************98579**********985489****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1489.00
//
Query:       MMETSP1174-20130828|5759_1  [L=988]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-20   69.4  23.9      7e-19   65.5  16.5    2.4  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5  16.5   1.7e-22     7e-19      23     554 ..      38     628 ..      20     659 .. 0.65

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.7e-22
   TIGR04154  23 isegevlfsgnDpwYhlReieytven.fpn.tlwFDpytnyPyGtevg...fg.......pLfdllvAtlalivGlgaps....qetietvalllpvvlgalvvipvYligkrlgd.rktGllaalllavlpgqflsrslvGflDHhiaEvlfstlavlalllalkvaeeeklskerdldalkkplayavlaGialalylltwppavlfvlivgvfvlvqlvldllrgk.speylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldra.yypa..avlglallgllvlal..vlpslfsllisnllrff....fgatataltiaEaqpllleegelslaralsefglafl.lalaglllllyrllkk.kskaeelfvlvWsvfilvatltqvRFeYylavnvavlsAyllswll................................leelkkelkkskkskkeketkkask...............................ivvvvllilllvllvpsv......................aaaaaqssgpggankdWedsleWlkenTPdtgldyygiYeekddfdypeesYGVlSWWDYGhwItvigeRipna 554
                 i++  +++ + Dpw+++R ++y++ n + +   wFD  + yP G+ vg   ++        ++ +l +t  li     +     + +++ v+ ++p+ +g+ + + + l++++  + +  G++a  +++++p++++ rs+ G +D    E +  t++++++ +  ++ +++  +   + +a++++++++vl+G+a++ ++ +w +  +++ +++v ++  +vl ++++k ++ y ++  + +++++ v v+     ++  s+ ++s l v++ +  + ++  +        +++l+ a ++++   v++ all+++ +a+   +  +f+ l + + + f     + +     +aE qp          ++a  ++   ++ la  gl++ +++l+ + +++++++f+lv+s ++ ++  +  R   +l  +++ l +y+++++                                 +     e kk++++ ke       +                                v+++ + ++  ++  ++                      +  a+ ++g + ++ d +++  Wl++nT +                       V+ WWDYG  It ig+R  +a
  MMETSP1174-20130828|5759_1  38 IRTYGLVIHEFDPWFNFRATQYLADNgWTKfFRWFDYKVWYPLGRPVGttiYPgmqitsvCIWRTLNSTYKLIKPWKIKAlrvlRISLNDVCCYVPAWFGVSATLFLGLLTAEASGsWASGVAASGIMSIIPAHIM-RSVGGGYD---NESIAVTAMCMTFFFWCRSLRADPKV--TNCEATRDSYVFGVLSGLAFVYMAAAWGGFTFVLNLIAVHTVGLVVLGRYSSKlHRAYSLFYVIGIFGATCVPVIG---YAPFKSMEQLSGLLVFYCIQFLEICE-IQR-----RKRNLSMAqVFVLrvKVFVPALLAIAGVATlgYSAGYFAPLGARIRGLFvkhtRTGNPLVDSVAEHQP--------ASEAAYRHYLNKVYdLAPYGLVISILKLVVNwERRDANVFILVYSCIAYYFCTKMSRLILLLGPVASALGGYAIGFIAdqcvvnaihygfvsldgiffsnkstekvkeivK-----ETKKTVNKNKE-------AagtdasdttsdagnprlehmkkigrrvwrspLVIIARISVAAWVFRKMTpdakeffktshemaegmsnpsiMFKARLNDGSEVMVDDYREAYWWLRDNTAEDA--------------------RVMAWWDYGYQITGIGNRTTIA 628
                 4445578899**************997766246***********998733344222222224555556665554332222111144567799********98888887777776652788****************.********...57888889999999888888766555..89***************************************99999998888824444445444455555554442...21222333444433333333333333.333.....33333333233220022222222222222212456666655555555552212444556779999999........334444444444443677788777777776557899***************************************8778899999************98777666444431.....22222222222.......12233444666678899999988887666654222222223322222222444555555544444444444333333344444455555555555555543333....................5*****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.19s 00:00:00.89 Elapsed: 00:00:00.68
# Mc/sec: 1917.72
//
Query:       MMETSP1174-20130828|5764_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1925.22
//
Query:       MMETSP1174-20130828|5765_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1174-20130828|5768_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   13.9   0.4     0.0089   13.2   0.3    1.2  1  TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
     0.0079   13.7   0.2      0.013   13.1   0.1    1.3  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00513  accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   4.3e-06    0.0089      13      61 ..      38      86 ..      32     102 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-06
   TIGR00513 13 aeleakieelkalsededvdlseeierlekrlekltkeifsnlkafqrl 61
                 e+ +++++lk + ed+  d++ ++  ++k l+kl++++fs++++ +++
  MMETSP1174-20130828|5768_1 38 GEVANEVNSLKGALEDQMRDITSQVAMVQKELQKLQNDTFSQMESLEKS 86
                6999**********9**99***********************9988775 PP

>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   6.1e-06     0.013      25      87 ..      34      96 ..      18     108 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.1e-06
   TIGR00636 25 veayGtv.DElnsflGvalskl.....keeelkeelekiqndlfdlgadlatksekkkiteekvkflee 87
                ++++G+v +E+ns  G +  ++     + + +++el+k+qnd f+ ++ l       k   ++v+ le+
  MMETSP1174-20130828|5768_1 34 LDVMGEVaNEVNSLKGALEDQMrditsQVAMVQKELQKLQNDTFSQMESLE------KSLPAQVQQLER 96
                5678886479*******9996544433344455555555555555555443......444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                      258  (0.0628961); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1036.36
//
Query:       MMETSP1174-20130828|5769_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-131  435.9   0.9   3.4e-131  435.5   0.6    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.4e-79  266.1   0.1    1.9e-79  265.6   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.7e-76  255.8   0.1    2.4e-76  255.3   0.1    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.3e-66  223.1   2.2    2.2e-63  212.6   0.4    1.6  2  TIGR03689 pup_AAA: proteasome ATPase
    1.9e-08   31.5   0.5    0.00038   17.3   0.0    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    4.1e-06   23.4   1.2    1.6e-05   21.4   0.0    2.0  2  TIGR00763 lon: ATP-dependent protease La
      6e-06   23.3   0.1    1.7e-05   21.9   0.0    1.8  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    7.2e-06   22.6   0.0    1.1e-05   22.1   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    7.6e-05   19.7   0.2    0.00036   17.5   0.0    2.0  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      0.001   15.9   9.1     0.0012   15.6   0.0    2.7  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0026   15.2   0.1      0.037   11.4   0.0    2.3  2  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0026   14.7   0.0     0.0052   13.7   0.0    1.5  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0089   13.6   0.4       0.12    9.9   0.0    2.3  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0098   12.4   0.1      0.024   11.1   0.0    1.6  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0099   12.3   0.7      0.017   11.5   0.0    1.7  2  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
       0.01   13.7   3.4      0.067   11.0   0.1    2.8  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.012   12.0   0.1       0.02   11.3   0.1    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.019   12.3   0.0      0.045   11.1   0.0    1.5  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
       0.31    8.7   4.0       0.35    8.5   0.1    2.5  3  TIGR02237 recomb_radB: DNA repair and recombination protein RadB


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.5   0.6  1.6e-133  3.4e-131       4     362 ..      54     410 ..      51     412 .. 0.98

  Alignments for each domain:
  == domain 1    score: 435.5 bits;  conditional E-value: 1.6e-133
   TIGR01242   4 lkekirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                 l++++   + + + l++e  +l+re+ r ++e++r++s pl+++  +e++d++  +v s++G ++ v++ + +dr++lkp a val++++ ++vd+lp e d +++ +  +e+p+vsy diGG + q +e++eavelpl + el++++Gi+pp+Gvl+yGppGtGkt++akava+ t a+fi vvgse+v+ky+GeG r+vr+vf+la+e ap+iifideidaia+kr d++t+ drevqr ll+ll ++dGfd   nvkvi atnr d ldpallrpGr+dr ie p pd + ++ +l+  + km+l e+vdle+  +  e +s ad+ ai+ eaG+ a+re+r +v  +df  a +k
  MMETSP1174-20130828|5769_1  54 LQKQMEFYDIQEEYLKDEMKNLKRELIRAKEEIKRIQSVPLVIGQFSEMVDENYGIVMSTAGSNYYVRILSTLDREQLKPNASVALHRHSHSVVDILPPESDSTIQLM--SEKPDVSYADIGGCDIQKQEVKEAVELPLTQFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAHATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVLQSCSAKMNLGEEVDLEDYVNRPEKISAADVSAICQEAGLQAVRENRYVVLSKDFDAAYKK 410
                 66667777888999*******************************************************************************************988..6**************************************************************************************************************************************************************************************************************************************************998776 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   0.1   8.8e-82   1.9e-79     443     687 ..     160     406 ..     135     420 .. 0.92

  Alignments for each domain:
  == domain 1    score: 265.6 bits;  conditional E-value: 8.8e-82
   TIGR01243 443 vlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakeklea 687
                 ++ e p+v + digg +  kqe++eave pl + e+++++gi pp+gvl++gppgtgkt++akava  + a fi+v g e + k++ge  + +r++fr ar+ apaiif+deidaia +r   ++ a    +ri+ +ll ++dg+++ ++v vi atnr d ldpallrpgrldr i  p pd++ +  +++  + +++l+e+vdle+  ++ e  + ad+ a+++ea l+a+re    v  + ++a
  MMETSP1174-20130828|5769_1 160 LMSEKPDVSYADIGGCDIQKQEVKEAVELPLTQFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAHATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEIDAIATKRFDAQTGAdrEVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVLQSCSAKMNLGEEVDLEDYVNRPEKISAADVSAICQEAGLQAVRENRYVVLSKDFDA 406
                 67799*******************************************************************************************************************765543324789******************************************************************************************************9765554444444 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.3   0.1   1.1e-78   2.4e-76      45     299 ..     159     414 ..     134     422 .. 0.96

  Alignments for each domain:
  == domain 1    score: 255.3 bits;  conditional E-value: 1.1e-78
   TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaG 299
                 +l++ek+ v+++d+ G+d +k+e++e v+  L + + ++++G   P+Gvl++GpPGtGkt++akava     +f+s+ Gs+fv+ + G G   vrD+f  a++naP+iifiDeiDa+  kr  + +g+  e+++ L  lL +mDGf+++++v v+ atnr+d LD+aLlrPGr+Dr++   +Pd ++++ +l+  + k++l eevdl++  +r   +s ad++ ++ ea l a+r+n+  v  k+++ a  + +  
  MMETSP1174-20130828|5769_1 159 QLMSEKPDVSYADIGGCDIQKQEVKEAVELpLTQFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAHATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVLQSCSAKMNLGEEVDLEDYVNRPEKISAADVSAICQEAGLQAVRENRYVVLSKDFDAAYKKHVNK 414
                 456779***********************8799************************************************************************************************************************************************************************************************************************9998765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   9.5e-07   0.00021       4     100 ..      52     149 ..      50     159 .. 0.88
   2 !  212.6   0.4     1e-65   2.2e-63     110     377 ..      97     353 ..      85     403 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 9.5e-07
   TIGR03689   4 releaeasslaakneklvealkaareklaelkeqldalaqPPstygtllevaadeetvevftagrkmrvavspeveaaelkaGaevrlneal.lvvea 100
                 + l+++++    + e l + +k+ +++l ++ke+++++++ P++ g + e+  ++  + ++tag ++ v++ +++++++lk+ a+v+l  ++  vv+ 
  MMETSP1174-20130828|5769_1  52 KSLQKQMEFYDIQEEYLKDEMKNLKRELIRAKEEIKRIQSVPLVIGQFSEMVDENYGIVMSTAGSNYYVRILSTLDREQLKPNASVALHRHShSVVDI 149
                 56778888888899999*********************************999999********************************8765156665 PP

  == domain 2    score: 212.6 bits;  conditional E-value: 1e-65
   TIGR03689 110 vtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveel.vleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrG.sGvssdve.ttvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilaky 377
                  +  e++d++  +v+++a++++ v++ ++l +e+l++  s+++ ++++  ++ +p ++ +++ ++ e Pdv+yadiGG d q +++++avelP+++ ely++ ++ pP+Gvl+yGPPG+Gkt++akava +           ++ f+++ G e+++ky+Ge  r +r +f  are+a    P ++f+de+d++   r  +   +d e   ++  ll ++dG ++  nv vi a+nr d +dPa+lrPGrld ki    Pd+++ + +l+  
  MMETSP1174-20130828|5769_1  97 GQFSEMVDENYGIVMSTAGSNYYVRILSTLDREQLKPNASVALHRHSHSVVDILPPESDSTIqLMSEKPDVSYADIGGCDIQKQEVKEAVELPLTQFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAHAT----------TASFISVVGSEFVQKYLGEGPRMVRDVFRLARENA----PAIIFIDEIDAIATKRFdAQTGADREvQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVLQSC 353
                 57789*************************************************999998873568**************************************************************9864..........458**************************999876....9***********999852334455552357889************************************************999888653 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-06   0.00038      47     101 ..     204     256 ..     174     262 .. 0.86
   2 !   12.4   0.1   5.4e-05     0.012     247     283 ..     263     298 ..     256     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-06
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlv 101
                 P+ +lm G+ G Gkt +a+ +a  + a fi v  + f +  y+G     +vrd+ 
  MMETSP1174-20130828|5769_1 204 PRGVLMYGPPGTGKTMMAKAVAHATTASFISVVGSEFVQ-KYLGE-GPRMVRDVF 256
                 899**********************************87.58885.467888875 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.4e-05
   TIGR00390 247 esGiifideidkiakkgessgadvsreGvqrdllPiv 283
                    iifideid ia+k   +++   re vqr ll ++
  MMETSP1174-20130828|5769_1 263 APAIIFIDEIDAIATKRFDAQTGADRE-VQRILLELL 298
                 4579************96666666676.999988776 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.21        45     220     252 ..      54      87 ..      38     128 .. 0.76
   2 !   21.4   0.0   7.2e-08   1.6e-05     357     448 ..     208     298 ..     203     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.21
   TIGR00763 220 veeklek.eqreylLkeqlkaikkElGeekdkkd 252
                 +++++e  + +e +Lk+++k +k+El  +k++ +
  MMETSP1174-20130828|5769_1  54 LQKQMEFyDIQEEYLKDEMKNLKRELIRAKEEIK 87 
                 5555553123555789999999999987766544 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 7.2e-08
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlg.......ssvrGdPasaLLEvL 448
                  ++GPPG GKt +ak++A+a+   f+  s+ G + v       + Y+G  P  + + ++ ++ + P +i++DEiD ++       ++   +    LLE+L
  MMETSP1174-20130828|5769_1 208 LMYGPPGTGKTMMAKAVAHATTASFI--SVVGSEFV-------QKYLGEGPRMVRDVFRLARENAPaIIFIDEIDAIAtkrfdaqTGADREVQRILLELL 298
                 689**********************6..77786655.......57***99955555666666666756789****9996666544444444555666666 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.5   7.6e+02     221     248 ..      53      80 ..      44     107 .. 0.55
   2 !   21.9   0.0   7.8e-08   1.7e-05      30      95 ..     204     277 ..     177     283 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.5
   TIGR00635 221 iakealeklkvdelGldelDrklLkali 248
                   ++ +e ++++e+ l+   ++l + li
  MMETSP1174-20130828|5769_1  53 SLQKQMEFYDIQEEYLKDEMKNLKRELI 80 
                 4445555555555555544444444444 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 7.8e-08
   TIGR00635  30 ldhvllyGPPGlGkttlakiiakelgvk.lkitsgpalek.....pgDlaailtal...eegdvlfiDeihrlsk 95 
                    vl+yGPPG Gkt +ak +a+   ++ + ++ +  ++k     p  ++  +  l   ++  ++fiDei +++ 
  MMETSP1174-20130828|5769_1 204 PRGVLMYGPPGTGKTMMAKAVAHATTASfISVVGSEFVQKylgegP-RMVRDVFRLareNAPAIIFIDEIDAIAT 277
                 4569******************998877255666566666333322.34443334411144579******99875 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.9e-08   1.1e-05     315     411 ..     207     302 ..     178     340 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.9e-08
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgak...ddfGleaidtLLarlE 411
                 +l+ GPPGtGkt +A++va+           + + v  ++++ +y+ge      ++   a +    ++F+DE+ a+  kr +a+   d   + ++  LL +++
  MMETSP1174-20130828|5769_1 207 VLMYGPPGTGKTMMAKAVAHAT-------TASFISVVGSEFVQKYLGEGPRMVRDVFRLAREnapAIIFIDEIDAIATKRFDAQtgaDREVQRILLELLNQMD 302
                 7899***************975.......467889999***********999999887665522279*********999654430113333444555555555 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.57   1.2e+02      53     104 ..      67     127 ..      44     160 .. 0.59
   2 !   17.5   0.0   1.7e-06   0.00036     120     218 ..     207     296 ..     192     303 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.57
   TIGR00382  53 eskeveeeleleelpkpkelkevld.eyviGq......eqakkvlsvavynhykrlrl..e 104
                  +k+  ++l++e + + +e+k +     viGq      e+   v+s a  n+y r+    +
  MMETSP1174-20130828|5769_1  67 YLKDEMKNLKRELIRAKEEIKRIQSvPLVIGQfsemvdENYGIVMSTAGSNYYVRILStlD 127
                 3344444455555555566665544135666644333345567899999999999875222 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.7e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvqqallk 218
                 +l+ Gp G+Gkt++a+++a+     f i+   +     y+Ge    ++  +++ a     +    ii+ideid ia k  +a    d     vq+ ll 
  MMETSP1174-20130828|5769_1 207 VLMYGPPGTGKTMMAKAVAHATTASF-ISVVGSEFVQKYLGEGPR-MVRDVFRLAR----ENAPAIIFIDEIDAIATKRFDAQTGAD---REVQRILLE 296
                 7899***************9999888.455556666789999854.4555555554....45578***********99766655544...335555555 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.7   3.6e+02     306     344 ..      39      77 ..      36      87 .. 0.81
   2 !   15.6   0.0   5.5e-06    0.0012      38      63 ..     202     227 ..     189     238 .. 0.86
   3 !    5.3   0.6    0.0076       1.6     124     273 ..     258     409 ..     250     418 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.7
   TIGR02928 306 edevrtgevyevYkevaeelgvdpltqrrisdllnelem 344
                 ++ ++ +++y +Yk++ ++++   ++++ ++d +++l+ 
  MMETSP1174-20130828|5769_1  39 KQDAQQEDLYIKYKSLQKQMEFYDIQEEYLKDEMKNLKR 77 
                 566788899999999999999999999999999999874 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 5.5e-06
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlke 63 
                   p+ vl+yG++GtGKt+++k+v ++
  MMETSP1174-20130828|5769_1 202 DPPRGVLMYGPPGTGKTMMAKAVAHA 227
                 56999****************99876 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0076
   TIGR02928 124 leeredsliivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRa.ekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqe 273
                 l +++  +ii +DEiD + +k  d           +L eL+   +  d    +v vi  +n ++ l+      +    +++i+Fp+ d ++ r +L++ + ++ + ++v  ++ +++  +++a +         + +eag  A +e++  v  ++ + A++
  MMETSP1174-20130828|5769_1 258 LARENAPAIIFIDEIDAIATKRFDAqtgadrevqrILLELLNQMDGFDQA-TNVKVIMATNRADTLDPAL--LRPGRLDRKIEFPNPDRRQKRMVLQSCSaKMNLGEEVDLEDYVNRPEKISAADV----S--AICQEAGLQAVRENRYVVLSKDFDAAYK 409
                 56777889999*******96655556799999999888888775554544.7899999999877655322..334455777888888888888888776546667777777777777666666662....2..2456666666666666666666666665 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00017     0.037      15      41 ..     205     231 ..     196     309 .. 0.82
   2 ?    1.2   0.0      0.25        53      57     107 ..     356     406 ..     340     414 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00017
   TIGR00678  15 hAlLfaGpeGvGkealaealakallCe 41 
                   +L++Gp+G+Gk+++a+a+a+a+ ++
  MMETSP1174-20130828|5769_1 205 RGVLMYGPPGTGKTMMAKAVAHATTAS 231
                 678******************998776 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.25
   TIGR00678  57 rieagnHPDllvlepegqkikvdqvreleeelsktplesgrrvviiedaea 107
                 +++ g+  Dl     + +ki + +v ++++e+  ++++ +r vv+ +d +a
  MMETSP1174-20130828|5769_1 356 KMNLGEEVDLEDYVNRPEKISAADVSAICQEAGLQAVRENRYVVLSKDFDA 406
                 5666666777788888889**********************9999877765 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.4e-05    0.0052      46     118 ..     208     276 ..     200     358 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.4e-05
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysla 118
                 ++ G PGtGkt +a+ +a+            +i v  +++v +y+G+  + +r+v + a      ++fide  ++a
  MMETSP1174-20130828|5769_1 208 LMYGPPGTGKTMMAKAVAHAT-------TASFISVVGSEFVQKYLGEGPRMVRDVFRLArenAPAIIFIDEIDAIA 276
                 66799**********999864.......5678999999****************99866211568******88876 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00056      0.12       3      27 ..     209     233 ..     207     242 .. 0.88
   2 ?    1.3   0.0      0.25        54      84     117 ..     251     285 ..     249     319 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00056
   TIGR01313   3 lmGvaGsGkstiakelakklgakfi 27 
                 + G+ G+Gk+ +ak++a+   a+fi
  MMETSP1174-20130828|5769_1 209 MYGPPGTGKTMMAKAVAHATTASFI 233
                 569******************9998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.25
   TIGR01313  84 kYRDllR.eaeaelafiyLeaskevilkRlksRkg 117
                   RD++R  +e   a+i+++   ++++kR  +  g
  MMETSP1174-20130828|5769_1 251 MVRDVFRlARENAPAIIFIDEIDAIATKRFDAQTG 285
                 679****77777889**************998877 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00011     0.024      86     111 ..     204     229 ..     195     241 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR02902  86 pqhviiyGppGvGktaaarlvleeak 111
                 p+ v++yGppG Gkt  a+ v + + 
  MMETSP1174-20130828|5769_1 204 PRGVLMYGPPGTGKTMMAKAVAHATT 229
                 889***************98876554 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.3   4.9e+02     386     443 ..      50     111 ..      39     127 .. 0.58
   2 !   11.5   0.0   8.1e-05     0.017      38      59 ..     205     226 ..     197     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.3
   TIGR00764 386 ealklaktle.kqladkyierk.keyk.virveggevGrvnGla.iiGeqsGivlpieaiva 443
                 + + l k++e   + ++y++ + k+ k  ++  ++e+ r++ +  +iG+ s +v+    iv 
  MMETSP1174-20130828|5769_1  50 KYKSLQKQMEfYDIQEEYLKDEmKNLKrELIRAKEEIKRIQSVPlVIGQFSEMVDENYGIVM 111
                 55556666663356667766431443313455666777777764367777777776655554 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 8.1e-05
   TIGR00764  38 rnvlliGePGvGksmlakamae 59 
                 r vl+ G PG+Gk+m+aka+a 
  MMETSP1174-20130828|5769_1 205 RGVLMYGPPGTGKTMMAKAVAH 226
                 89******************96 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.1   4.5e+02      43      74 ..      61      92 ..      50     136 .. 0.71
   2 ?   11.0   0.1   0.00031     0.067       4      30 ..     208     234 ..     206     239 .. 0.88
   3 ?    2.2   0.0      0.16        35      27      65 ..     373     412 ..     363     421 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.1
   TIGR02173 43 ldlaeskkaeeekeiDkkiDrkikeiaekekn 74
                 d++e+  ++e k++ +++ r  +ei + ++ 
  MMETSP1174-20130828|5769_1 61 YDIQEEYLKDEMKNLKRELIRAKEEIKRIQSV 92
                37888888888888888888888887755544 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00031
   TIGR02173   4 visGpPGsGkttvakilaeklslklis 30 
                  + GpPG+Gkt +ak +a+  +  +is
  MMETSP1174-20130828|5769_1 208 LMYGPPGTGKTMMAKAVAHATTASFIS 234
                 567****************99998887 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.16
   TIGR02173  27 klisaGkirelaekkgld.laeskkaeeekeiDkkiDrki 65 
                 + isa ++  + ++ gl+ + e++++  +k+ D    +++
  MMETSP1174-20130828|5769_1 373 EKISAADVSAICQEAGLQaVRENRYVVLSKDFDAAYKKHV 412
                 579**************74789999999999996544433 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.1e-05      0.02     213     231 ..     206     224 ..     197     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.1e-05
   TIGR00368 213 nllllGPPGsGktllakrl 231
                  +l+ GPPG+Gkt++ak +
  MMETSP1174-20130828|5769_1 206 GVLMYGPPGTGKTMMAKAV 224
                 5899************987 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021     0.045      22      55 ..     205     238 ..     195     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00021
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGd 55 
                 + v + GP GtGkt +a +va+      + + G 
  MMETSP1174-20130828|5769_1 205 RGVLMYGPPGTGKTMMAKAVAHATTASFISVVGS 238
                 567899****************998888888776 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.3     5e+02     133     192 ..      84     141 ..      54     146 .. 0.55
   2 ?    8.5   0.1    0.0016      0.35      17      44 ..     209     236 ..     204     242 .. 0.87
   3 ?    0.3   0.0      0.53   1.1e+02      83     141 ..     249     310 ..     239     323 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.3
   TIGR02237 133 lslArkkdlavvitnqvyedvdndtlrplggtlleylskvilrleklergeRkavlekHr 192
                  ++ r + ++ vi  q  e vd+++   ++    +y  + +  l++ +  +  a +  Hr
  MMETSP1174-20130828|5769_1  84 EEIKRIQSVPLVI-GQFSEMVDENYGIVMSTAGSNYYVRILSTLDREQ-LKPNASVALHR 141
                 3444555555444.5777777777666666666677777777777765.33333333333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0016
   TIGR02237  17 iyGpggsGKtnialilaveaaekgkkvv 44 
                 +yGp+g+GKt +a  +a  +++++  vv
  MMETSP1174-20130828|5769_1 209 MYGPPGTGKTMMAKAVAHATTASFISVV 236
                 7************999999988877665 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.53
   TIGR02237  83 ekaiqkaskliekekadlvvvDsl....talyRleksddr..islklelarqlslLlslArkkdl 141
                  ++++++++l++++   ++ +D +    t+ + ++ + dr  +++ lel +q+     + + +++
  MMETSP1174-20130828|5769_1 249 PRMVRDVFRLARENAPAIIFIDEIdaiaTKRFDAQTGADRevQRILLELLNQMDG---FDQATNV 310
                 5677888888888877778777652222445666666665444555555555543...3334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      236  (0.0575329); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.53
# Mc/sec: 1053.42
//
Query:       MMETSP1174-20130828|5771_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-38  128.1   0.0    4.5e-36  122.4   0.0    2.0  2  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase
    8.7e-36  121.5   0.1    1.3e-35  120.8   0.0    1.2  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
    2.6e-35  120.0   0.0    3.4e-35  119.6   0.0    1.2  1  TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
    4.1e-31  106.3   0.0    5.8e-31  105.8   0.0    1.1  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
    0.00023   17.6   0.1    0.00031   17.2   0.1    1.1  1  TIGR01211 ELP3: histone acetyltransferase, ELP3 family


Domain annotation for each model (and alignments):
>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   5.5e-39   4.5e-36      47     245 ..     100     307 ..      61     340 .. 0.82
   2 !    3.6   0.0    0.0062       5.1     320     403 ..     372     456 ..     363     491 .. 0.72

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 5.5e-39
   TIGR00538  47 ktPlslyvhiPfcekacyfcgcnvi...itkrkekkdrylealkkelalvaplldkdr.kvaqlhwGGGtPtylskeqieellkeireafefa.edaeisieidPrel..ekevlkalrdeGfnrlslGvqdfdkevqkavnriqpeelikekleklreagfesinldliyGlPkqtk..esfektlekvle.lnPdrlavfnyayvPt 245
                  + + lyvh+Pfc+++c fc   v+     +r++ +++y+++l +e++   +ll +++ ++  +  GGGtP+  s + ie+++++  + ++f  e+  +sie  P+    e e++ka +d G  r+s+Gvq  d+ + + + r     l+k+  + +r agfes n+dl+yG+P + k  + +++t++++++ l+Pd ++ +   y  t
  MMETSP1174-20130828|5771_1 100 LKKMMLYVHVPFCAQRCQFCEYTVVdpkQGSRDNVQNKYFDTLLNEFDQYRNLLGTEKkRLVGFDIGGGTPSMASIQNIERVMQKAMDCYDFDhEETAVSIETTPKIAanEPEKIKAYFDMGIRRISMGVQTTDFALAERLGRHDGDYLVKA-RDNVRAAGFESFNIDLMYGFPLRDKseDKWANTVRNTIQvLEPDHITLYRMRYKGT 307
                 45678****************9999222345678899*****************876516889****************************9725789*******976225579*****************************988777765.699*****************9765422789******99868********9887654 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0062
   TIGR00538 320 lGlGvtsismlgdvyaq..nykelkeyekaldeeklpverGvalsqddlirrevikellcnlkldyskieekfdldfkdyfakele 403
                 lGlG+ s s  + +y      k +++y+++++ ++lp++  + ls+   + +    ++     ++ ++  ++f++++++ f +++e
  MMETSP1174-20130828|5771_1 372 LGLGAQSFSHSTLAYNLggVTKRMEQYHRSVELGRLPIQDLYHLSKSGAMGKFCSVSFYF-GGIHLAHFKRNFGVQLEHAFPEQVE 456
                 6888888888777776411589***********************998887765555433.2566666777777777777766554 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   1.6e-38   1.3e-35      18     403 ..      83     479 ..      65     482 .. 0.79

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 1.6e-38
   TIGR04107  18 pveeeelqevwqellaeaekakrllYihiPFCrkrClfCgFf....qnaakeelvaeYvdallkelkaeaelplaqsapieavYlGGGTPtaLsaedlarlieaireylpla.pdcEiTlEg..RinefddekaeaaleagvnRfSiGvQsfdtevRrrlgRlddreevlerleeLsaldraavviDLlyGLp..gqteeiweeDle.ivaelgldGvdlYaLnllpgtplakavekgkleapadteekaslyaagvealeaegwkq.lSvsHwartnrerslYNslik...sgaevlafGagAGGnlgglslm....verdleeyleavkagekplamltkqseseallaalkagldagvldlealeal.keelaealapLleqWqkagLleleee..llkltlaG 403
                 + ++ ++q+++  ++   + +k +lY+h+PFC++rC fC++     ++ +++++ ++Y+d+ll+e ++  +l  ++++ +    +GGGTP+  s ++++r++++  +  +   +++ + +E+  +i   + ek++a ++ g+ R+S+GvQ+ d ++  rlgR  d++ ++++ +++ a    +  iDL+yG+p  +++e+ w++ ++ +++ l+ d ++lY ++ ++gt++a++ e+  l+++ + +      +++++ l+++g++  + ++ ++rt+        l k   +g++ + +G gA    +++       v++ +e+y+++v+ g+ p++ l + s+s a+ +     +  g ++l++++   + +l++a+ + +e    agL+e ++    l +tl+G
  MMETSP1174-20130828|5771_1  83 ERSQVKIQDTLVGAYG--SLKKMMLYVHVPFCAQRCQFCEYTvvdpKQGSRDNVQNKYFDTLLNEFDQYRNLLGTEKKRLVGFDIGGGTPSMASIQNIERVMQKAMDCYDFDhEETAVSIETtpKIAANEPEKIKAYFDMGIRRISMGVQTTDFALAERLGRH-DGDYLVKARDNVRAAGFESFNIDLMYGFPlrDKSEDKWANTVRnTIQVLEPDHITLYRMR-YKGTKMAHLQERVGLQQVNKQS------ETATRILDEAGFHGwVGKNTFSRTPGSSGCSDYLEKrvlEGTPYVGLGLGAQSFSHSTLAYnlggVTKRMEQYHRSVELGRLPIQDLYHLSKSGAMGKFCSVSFYFGGIHLAHFKRNfGVQLEHAFPEQVEFVLGAGLMEYDKAtgRLAMTLKG 479
                 3344444444433332..334679****************974444678899999****************************************************99997256889999855799999********************************5.789999999******************9943456899*****945566899*******97.6899*****9999988777333......456677777777643789999999886655555555000556666667777666555433313335789*******************************************995444888888888888888888888887551145555555 PP

>> TIGR00539  hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   4.1e-38   3.4e-35       1     285 [.     103     405 ..     103     461 .. 0.75

  Alignments for each domain:
  == domain 1    score: 119.6 bits;  conditional E-value: 4.1e-38
   TIGR00539   1 lslYihiPfCeqkCgYCdfnsyaqks....qpkeeYlqaLlqdlka..alaktdqeklksifiGGGtPsslsaealkklleeikkqlkls.ddieitveanPetv..eaeklkglkeaGinrlslGvqsfedDkLeklgrvhkakevasavelakksGlenislDLmyglPlqt..leelkeelklale.LdaehlsvYaLivepntvlekrakklpddealaelyevvrelleaagfkqYevsn.yaka..GfqvkhnLaY..WsaedYlgiGaGa....hGkvanertvakklvktyikkiler 285
                 ++lY+h+PfC q+C++C++     k+    + ++ Y + Ll ++ +  +l  t+++ l    iGGGtPs+ s +++++++++     +++ +++ +++e  P+    e ek+k + ++Gi r+s+Gvq+ +  + e+lgr h+   +  a + ++  G+e++++DLmyg Pl    +++  + +++ ++ L+++h+ +Y +   + t ++++++++   +++ +  e + ++l+ agf+ +   n ++++     +   L     +   Y+g+G Ga    h ++a + + ++k +++y+    + 
  MMETSP1174-20130828|5771_1 103 MMLYVHVPFCAQRCQFCEYTVVDPKQgsrdNVQNKYFDTLLNEFDQyrNLLGTEKKRLVGFDIGGGTPSMASIQNIERVMQKAMDCYDFDhEETAVSIETTPKIAanEPEKIKAYFDMGIRRISMGVQTTDFALAERLGR-HDGDYLVKARDNVRAAGFESFNIDLMYGFPLRDksEDKWANTVRNTIQvLEPDHITLYRMRY-KGTKMAHLQERV-GLQQVNKQSETATRILDEAGFHGWVGKNtFSRTpgSSGCSDYLEKrvLEGTPYVGLGLGAqsfsHSTLAYNLGGVTKRMEQYHRSVELG 405
                 689****************98776661122556678888877665422677777999*******************************752578899*****976225589*****************************.66689999**********************86511556678888776549*********986.789999999997.557888899999*********98854432666521223444444311334567777777644444556666666666666666665555 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   7.1e-34   5.8e-31      67     313 ..      85     335 ..      55     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 105.8 bits;  conditional E-value: 7.1e-34
   TIGR03994  67 eiakrekellekldyeeeyslYvgiPFCptrClYCsFtsapie.kakkkv.eeyldallkeleavakllk..gkkletvYiGGGtPttlsaeqlerllekiekkfdlsk.vkEftvEaG.RpDsitaeklkvlkkhgvsRisinPqtmndktLkliGRkHtvedvveafklarelGfdninmDlivGLp..getleeveetlee.vkklaPesltvHalalkrasrlklekekyeeakaeetaemlelaaelaeel 313
                 + +k + +l+      +++ lYv +PFC  rC +C +t  + +   +++v ++y+d+ll+e +++++ll   +k+l  + iGGGtP+  s +++er+++k  +++d+++  +   +E+  +  +   ek+k+  ++g++Ris+  qt +    + +GR H  + +v+a + +r++Gf++ n+Dl+ G p  + ++++ ++t+++ ++ l+P+ +t++ +  k + ++   +e+      ++++++ e+a++++ e+
  MMETSP1174-20130828|5771_1  85 SQVKIQDTLVGAYGSLKKMMLYVHVPFCAQRCQFCEYTVVDPKqGSRDNVqNKYFDTLLNEFDQYRNLLGteKKRLVGFDIGGGTPSMASIQNIERVMQKAMDCYDFDHeETAVSIETTpKIAANEPEKIKAYFDMGIRRISMGVQTTDFALAERLGR-HDGDYLVKARDNVRAAGFESFNIDLMYGFPlrDKSEDKWANTVRNtIQVLEPDHITLYRMRYKGT-KMAHLQER---VGLQQVNKQSETATRILDEA 335
                 334556677777778899*******************9875542455555168**************99777999*******************************9982344567765133445579*****************************8.89999***********************884456778899999753899***********99854.44444443...44555555555555555555 PP

>> TIGR01211  ELP3: histone acetyltransferase, ELP3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   3.8e-07   0.00031     187     295 ..     190     300 ..     132     332 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.8e-07
   TIGR01211 187 kakvrcvgltietrPdyare..eeidemlklGatrvelGvqtiyeevleeikrGhtvkevveatrllkdaglk.vayhlmPglpgssferdlksfrelfederfkpdmlkiy 295
                    +   +++iet P  a +  e+i+  +++G  r+ +Gvqt+   ++e+  r h     v+a   ++ ag+   ++ lm g+p  ++  d+         +   pd + +y
  MMETSP1174-20130828|5771_1 190 DFDHEETAVSIETTPKIAANepEKIKAYFDMGIRRISMGVQTTDFALAERLGR-HDGDYLVKARDNVRAAGFEsFNIDLMYGFPLRDKSEDKWANTVRNTIQVLEPDHITLY 300
                 346778899*******98652279**************************999.777999***********9747999****998777666543332223345667777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1834.97
//
Query:       MMETSP1174-20130828|5774_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-75  252.4  36.5    2.3e-52  175.7  24.2    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      2e-62  209.2  27.5    2.7e-62  208.7  19.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    9.8e-05   19.9   0.0    0.00029   18.3   0.0    1.8  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
     0.0023   15.0   0.0     0.0052   13.9   0.0    1.5  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
     0.0029   15.0   0.0      0.012   12.9   0.0    2.1  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7  24.2   2.8e-55   2.3e-52     536    1050 ..       4     524 ..       1     529 [. 0.79
   2 !   76.3   0.0   2.9e-25   2.4e-22    1059    1160 ..     555     658 ..     538     662 .. 0.85

  Alignments for each domain:
  == domain 1    score: 175.7 bits;  conditional E-value: 2.8e-55
   TIGR02169  536 erYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdl.vefdekyepvvkyvlgdTlvvedleaarrlmgkfRl..VtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeie....eleeqkkeiek.......eieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeErkellerieelekkkrevFmeaFeainenfkeifaeLs.dGtgeLiLen 1050
                  e+Y l +EvAaGn+l  v+V++d++A++ I+ l ++kagr+tF+PL k+     d  +++    +  +++l +ef ++ ++++++++   l+ +d+e+a +   +  +  +t +G+ +++ Ga+ GG++  r+ +l + +   k++   e+l + e+e e++ +e + +++++ +l   ++++e+k +++++ ++q+ ee    k++l +le++++++ e+     +el++l+a+ ++ + ++      l+    +++++ ++++++ ++   ee++  +a+le++  e ++l+ l k+ l+++ +e++e+      ++ +  +++++       e++ +    +++++ l+e+++a +e ++  +d ++++e l+a+  e++++ e++e + ek+ ++ + l +k+e+   +++el++ +   e + +++l+++++ k+l+  +++l +   vN kA ++Y +  +++++l e++++L   +++++++i +l+++k e+ +++F+ ++++f+e+f+eL   G+g+Li+ +
  MMETSP1174-20130828|5774_1    4 EKYRLPVEVAAGNQLFHVIVDNDDTAARLIKCLNREKAGRLTFMPLSKLVVYPVDYPKSKD---VHPLIELaIEFKPELKKAMQQIFNKKLLARDFETATKFSNECNMdsITFDGDQVNRKGALEGGYHDDRKSKLLAFYGIRKAK---EELIKHEAEHETCEAEATAVDQQIAHLMGTIQKSEAKRNNLHEVAKQVIEEVTLRKKELSKLEDQINSVIEKQPSMLRELTQLQAQAQSFRTEIG---TPLKTTLTKEEHSTLKRLTALSQRYSEELAARDAALEDVAVERKRLQsLLKDNLSKRANEARERLSsalgDIGADAAQRQEilanrrlELDRQDRGTKSVAASLKEIRKAYQERRSIVNDCQSDIEVLRANEAEIQERLEHVEKTSEKQLNKRSMLVQKREENLRKIQELGSLP-TAELDTHSHLNIKDLMKKLHSTNQKLTKYSHVNKKALDQYVNFSEQREQLLERKKELDDGSAAIRDLISSLDQQKDEAILRTFKGVSKHFSEVFSELVpSGSGHLIMRT 524 
                  89************************************************96555544444...4555555589****************************998887779*****************888887777777766665...77888888888888888888888888888888888888877777777777777777777777777777777777777777777666666665554...345555667788889999999999999999999999999988888887777777777776666554111133333333333000000033333444556667777777777777777778888888888888888888888888888877777777788888888888888754.556666789****************************************************************************************99*******987 PP

  == domain 2    score: 76.3 bits;  conditional E-value: 2.9e-25
   TIGR02169 1059 lelkakPkdKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikekake....aQfivvslrkpmleaAdraiGvtlrrdgesqv 1160
                  ++++ +P + +v  +  +SGG K+++ALs++fAiQr  P+pfY+fDE D  LD      va +i+++a++    +Qfi  ++r  +++ A++  G++l+ +++s++
  MMETSP1174-20130828|5774_1  555 VKVSFTPGG-EVFLMSQLSGGQKAIVALSIVFAIQRCDPAPFYLFDELDQALDSTYRAAVAAMIQRQASHptnpTQFITTTFRPELVNVAAKCYGISLQ-NKNSNI 658 
                  556667766.6888999*************************************************996544449************************.888887 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7  19.1   3.2e-65   2.7e-62     535    1171 ..       4     654 ..       2     655 .. 0.88

  Alignments for each domain:
  == domain 1    score: 208.7 bits;  conditional E-value: 3.2e-65
   TIGR02168  535 ekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsek.tessil......erkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeelee.aeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleekikeLGpVNlaAieEyeelkeRyeflekqkeDleeAkekLeeaIeeidkearerfkdtfekvnenfqevFsklFggGeaeLeltdpedl....................LeagieIkaqP.pGKklqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefs....kktQFIviTHnkgTMeeadqLyGVTMqek 1171
                  eky+  +e+a g++l +v+v+n+++a + i+ l+++++Gr+tf+pl+     ++ +   +   ++++v  +++  ++++++l+ka+++++++ l++ d+++A++ +++ +     +t dG+ v+r+g++ gg  + ++s++l      + k+e+ ++e+e e+ e+++++ +++++ l  + ++ e ++++l++ +++  ++++ +kkel++le +++++ e+  +  +el++l+++ ++ ++e+   ++++l ke ++++++l+a  ++++eel+a ++al+++  e ++l++ ++++ ++  + ++  ++l+  l ++ + +++++e +++ + e++++++  +   + l+e+       ++a +e+r+  ++ +++++ l+ +  e++++le+ ++  ++  ++ + l ++++e++ +++e ++l   e+++++     + +++ ++l++ ++k+++   VN +A+++y + +e +e+l + k++l++  + +++ I+ +d++  e  + tf+ v ++f evFs+l   G++ L +  ++dl                       g+++k+++ pG     +s+LSGG KA++Al+++FAi +  PaPf+++DE d +LD +     a ++++ +    + tQFI  T + + +++a + yG+  q+k
  MMETSP1174-20130828|5774_1    4 EKYRLPVEVAAGNQLFHVIVDNDDTAARLIKCLNREKAGRLTFMPLS-----KLVVYPVDY-PKSKDVHPLIELAIEFKPELKKAMQQIFNKKLLARDFETATKFSNECNM--DSITFDGDQVNRKGALEGGYHDdRKSKLLafygirKAKEELIKHEAEHETCEAEATAVDQQIAHLMGTIQKSEAKRNNLHEVAKQVIEEVTLRKKELSKLEDQINSVIEKQPSMLRELTQLQAQAQSFRTEIGTpLKTTLtKEEHSTLKRLTALSQRYSEELAARDAALEDVAVERKRLQSLLKDNLSK--RANEARERLSSALGDIGADAAQRQEILANRRLELDRQDRGTKSVAASLKEI-------RKAYQERRSIVNDCQSDIEVLRANEAEIQERLEHVEKTSEKQLNKRSMLVQKREENLRKIQELGSLPTAELDTHSH---LNIKDLMKKLHSTNQKLTKYSHVNKKALDQYVNFSEQREQLLERKKELDDGSAAIRDLISSLDQQKDEAILRTFKGVSKHFSEVFSELVPSGSGHLIMRTSTDLeeddeeegdgsggtprmtvsDFEGVQVKVSFtPGGEVFLMSQLSGGQKAIVALSIVFAIQRCDPAPFYLFDELDQALDSTYRAAVAAMIQRQAshptNPTQFITTTFRPELVNVAAKCYGISLQNK 654 
                  89********************************************9.....333322233.345679999999******************************9999887..69*****************99876666652222225677999*****************************************************************************************98733444459999999*******************************9999975544..333444455555666666666666666555555555555444444444444.......45568889999999**********************9999999999****************************88...67889*********************************************************************************************99********************99987779*****8659**********************************************999999999986651222569*********************99985 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.6e-07   0.00029     126     179 ..     568     625 ..     565     654 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.6e-07
   TIGR01277 126 peelsGGqrqrvalarclv....rekpillldepfsaldpklreemlalvkkladekk 179
                   +lsGGq+  val+  +      + p +l+de   ald + r  + a++++ a++  
  MMETSP1174-20130828|5774_1 568 MSQLSGGQKAIVALSIVFAiqrcDPAPFYLFDELDQALDSTYRAAVAAMIQRQASHPT 625
                 679***********9887422214689***********************99988644 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.3e-06    0.0052     144     195 ..     568     623 ..     562     636 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.3e-06
   TIGR03005 144 paqlsGGqkqrvaiaralalr...p.kvllfdevtsaldpelveevlnvlrrlase 195
                  +qlsGGqk  va++  +a++   p    lfde   ald      v ++++r as 
  MMETSP1174-20130828|5774_1 568 MSQLSGGQKAIVALSIVFAIQrcdPaPFYLFDELDQALDSTYRAAVAAMIQRQASH 623
                 58*****************9844432489*************99999999887764 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.4   1.2e+03      32      54 ..     512     533 ..     507     535 .. 0.78
   2 !   12.9   0.0   1.5e-05     0.012     129     200 ..     569     645 ..     563     675 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.4
   TIGR00968  32 lGpsGsGkstllrviaGlekpds 54 
                 l psGsG   ++r+ + le++d+
  MMETSP1174-20130828|5774_1 512 LVPSGSGH-LIMRTSTDLEEDDE 533
                 78*****7.56899899988875 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.5e-05
   TIGR00968 129 sqlsGGqrqrvalaralave...pq.vllldepfgaldakvrkelrawl.rklhdevkvttvfvthdqeealevadr 200
                 sqlsGGq+  val+  +a++   p    l+de   ald+  r  + a + r+  +  + t  + t  + e ++va +
  MMETSP1174-20130828|5774_1 569 SQLSGGQKAIVALSIVFAIQrcdPApFYLFDELDQALDSTYRAAVAAMIqRQASHPTNPTQFITTTFRPELVNVAAK 645
                 8*****************974445437899**************999882445555555655556666788888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       447  (0.108971); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.18s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 1562.23
//
Query:       MMETSP1174-20130828|5773_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-24   82.0   0.3    4.3e-23   79.8   0.2    1.9  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    4.1e-18   64.1   0.0    5.2e-18   63.7   0.0    1.1  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
      2e-17   61.4   0.1    6.5e-17   59.7   0.1    1.7  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    5.2e-12   44.0   0.0    8.4e-08   30.4   0.0    2.3  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.6e-11   42.2   0.0    6.1e-10   37.1   0.0    2.1  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    1.5e-10   39.2   0.0    1.1e-09   36.4   0.0    1.9  1  TIGR01990 bPGM: beta-phosphoglucomutase
    9.8e-10   36.9   0.0    1.2e-06   26.9   0.0    2.2  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    1.2e-07   29.8   0.0    5.1e-07   27.7   0.0    1.8  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    1.5e-06   25.5   0.0    2.2e-06   25.0   0.0    1.2  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
    4.1e-06   24.8   0.2    0.00056   17.9   0.0    2.4  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    6.2e-06   24.0   0.1    7.4e-05   20.5   0.0    2.1  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    3.3e-05   21.3   0.2    0.00014   19.3   0.1    1.9  1  TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
     0.0006   17.5   0.0    0.00089   16.9   0.0    1.3  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
     0.0007   17.0   0.0      0.015   12.6   0.0    2.0  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
     0.0042   14.7   0.0      0.017   12.7   0.0    1.8  2  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.02   12.4   0.0    1.4  1  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase


Domain annotation for each model (and alignments):
>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.2   1.7e-25   4.3e-23       1     209 [.      49     256 ..      49     260 .. 0.79

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 1.7e-25
   TIGR01449   1 vlfDLDGtLvdsAPdlaaavnkaLaalgsavltleevagfignGvd.vlveRv.LavageerdaervaelrklFlrhYeevaee.ltsvfpgveaaleaLra.kGlrlglvtnkPealarplLellglakylevligGdslaqrkPdPePLllaaerlgvepaqmvyvGDsevDiaaArAAGlpsvlltyGYrygeaveelpadvlldsleel 209
                 vlfD+DGtL ds     +a  +++ +    +l+ ee        ++  l + v L+  +e+ ++e    l ++F++ Y ++  +  + +f+g+   l+a+ a + lrlg  tn  +a    +L + +l  ++  + g d+++  kP  + Lll a  lg ++ q+vyvGD  +D +aArAAG++s+++ +G +  e v e + d ++ + eel
  MMETSP1174-20130828|5773_1  49 VLFDIDGTLADSWRLGYEATKAVIGDD---SLSQEEYHFGCRYTTPeRLARHVgLEPGTETFATE-GVRLGAQFDEMYIAQVSTdTAPLFDGMLPLLNAIGAtEALRLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGVEWGSNVRE-VLEPEFDCVVATREEL 256
                 89*********9877777776665554...44455544434444441565555344445555555.677999****9987766515568**********9763789*************************************************************************************99554.4455566666666666 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0     2e-20   5.2e-18       2     186 .]      47     232 ..      46     232 .. 0.90

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 2e-20
   TIGR02009   2 kaviFDlDGvlvdtaslHakAwkaladklglefdeqineslkGlkredivrailksrgskelseekieqlaerknelyrellrltgaevlpgienlleelkk.kkiavalgssskna..kaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvkpeecvvfEDaeaGveaaraagmfavav 186
                 ++v+FD+DG+l+d  +l ++A ka++ + +l+ +e+++   + ++ e+ +r++  + g +++++e   +l+++ +e+y + +++++a +++g+  ll+++ + + ++++  ++++ a  +a+L   +l+ +f +v  a++v + KP  +  L++a +Lg+++++cv + Da +  +aaraagm+++ v
  MMETSP1174-20130828|5773_1  47 QGVLFDIDGTLADSWRLGYEATKAVIGDDSLS-QEEYHFGCRYTTPERLARHVGLEPGTETFATEG-VRLGAQFDEMYIAQVSTDTAPLFDGMLPLLNAIGAtEALRLGALTNAAVAygEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGV 232
                 79*************************99987.578999999999999999997665888888888.7888888888888888777***********999762679***999996553389***************************************************************9987 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.1   2.5e-19   6.5e-17       1     193 [.      49     250 ..      49     262 .. 0.77

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 2.5e-19
   TIGR01454   1 vvfdldgvlvdsfavmreafaiayaevvgdgeapfeeyrrhlgryf.pd.imrimglpleveepfvresyrl.............agevevfegvpellael.radglgtaiatgksgprarsllealgllelldevigsdevarpkpapdivrealdlldvaaeaavmvgdalidlasaraagvaavaalwgetdeaellaarpdvvl 193
                 v+fd+dg l ds+ +  ea     + v+gd     eey+    ry  p+ + r +gl     e f  e  rl             ++   +f+g+  ll  +  ++ l++   t  + +   ++l    l +++  v g+d+v+rpkp  d ++   + l+  a ++v vgda+ d ++araag+ +++  wg +   e+l  + d v+
  MMETSP1174-20130828|5773_1  49 VLFDIDGTLADSWRLGYEA----TKAVIGDDSLSQEEYHFG-CRYTtPErLARHVGLEPGT-ETFATEGVRLgaqfdemyiaqvsTDTAPLFDGMLPLLNAIgATEALRLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGVEWGSNVR-EVLEPEFDCVV 250
                 79***********988886....4689***********644.4664265366888886654.579999999833322211111111223357777777766624577888889999999999**********************************************************************98654.44445555555 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0002     0.052       2      22 ..      49      69 ..      48      94 .. 0.84
   2 !   30.4   0.0   3.3e-10   8.4e-08     105     154 .]     183     232 ..     151     232 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0002
   TIGR01509  2 ilFDlDgvLvdtekglvpeel 22
                +lFD+Dg+L d++  +++  +
  MMETSP1174-20130828|5773_1 49 VLFDIDGTLADSWRLGYEATK 69
                89***********99887665 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 3.3e-10
   TIGR01509 105 ddvgsgKPdpdiylqalkklglkpeeclfvdDsaagieaakaaGmktvlv 154
                 ddv+++KP  d +l  + +lgl++++c+ v D+++  +aa+aaGm++++v
  MMETSP1174-20130828|5773_1 183 DDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGV 232
                 589*********************************************97 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.4e-12   6.1e-10       3     201 ..      47     239 ..      45     256 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 2.4e-12
   TIGR02253   3 kavfFDlddTLidtsklaekalrevvevlieegleldeeealeeleklikelgsnyekhfdslirrlseeaepklvaeaviaylk.lklaylkvypdvvkvLleLre.sGyrlgliTdgltekqweklerlgvrdfFdavivseelgveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskk 201
                 ++v+FD+d+TL d+  l+ +a + v+        +l++ee +  +   + e   ++        ++  + + ++l a++ ++y   + + +     ++  +L  + +   +rlg++T++   +  + l   ++r+ F  v   ++++  KP       ++  lg+++ ++v+vGD + +D k a+++g+ ++ ++ g +  
  MMETSP1174-20130828|5773_1  47 QGVLFDIDGTLADSWRLGYEATKAVIG----D-DSLSQEEYHFGCRYTTPERLARHVGLEPG--TETFATEGVRLGAQFDEMYIAqVSTDTAPLFDGMLPLLNAIGAtEALRLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAP-SDGKAARAAGMRSIGVEWGSNVR 239
                 5799***********999999888763....2.23455555555554444444444333333..23334444555555544444436666666777777788777531349********999999999***********************************************98.699**********9887766555 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   4.2e-12   1.1e-09       2     186 ..      47     232 ..      46     233 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 4.2e-12
   TIGR01990   2 kaviFDlDGvitdtaeyhylawkkladelgiefdeelnesLkGvsReesleai..lkkakkkyseeekeelaerknekYvellkeltpedvlpgikelleelkk.kkiki.ala.sasknaklvleklelkdkfdaivdaaevkkgkPdPeiFlaaaeklgvspeecigieDaeaGieaikaagilavgv 186
                 ++v+FD+DG ++d  ++ y+a k++  + +++ +e      +  +  e l +   l+ ++ +  ++e  +l ++ +e+Y   ++  +++ ++ g+  ll+ + + + +++ al+ +a   ++ vl+  +l+  f ++  a++v ++kP  +  l  a +lg+++++c+ + Da +  +a++aag+ ++gv
  MMETSP1174-20130828|5773_1  47 QGVLFDIDGTLADSWRLGYEATKAVIGDDSLSQEEYHF-GCRYTT-PERLARHvgLEPGT-ETFATEGVRLGAQFDEMYIAQVST-DTAPLFDGMLPLLNAIGAtEALRLgALTnAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGV 232
                 79***********************9998887655432.222222.23333330133334.444566778889999999888864.77889*********99761557773454144567899******************************************************************8 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0034      0.86       2      13 ..      49      60 ..      48      75 .. 0.88
   2 !   26.9   0.0   4.6e-09   1.2e-06      73     149 .]     146     226 ..     137     226 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0034
   TIGR01549  2 ilfDidGTLvds 13
                +lfDidGTL ds
  MMETSP1174-20130828|5773_1 49 VLFDIDGTLADS 60
                89*******997 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 4.6e-09
   TIGR01549  73 elagyrlgiiSngslr..aqklllrkledyfelilvsdepg.sKpepeiflaaleslgle.pevlhvGDnlsDieaaknag 149
                 + + +rlg ++n+ ++  ++ l+++ l+ +f  + ++d+++  Kp  + +l ++ +lgl+ +++++vGD+ sD +aa++ag
  MMETSP1174-20130828|5773_1 146 ATEALRLGALTNAAVAygEAVLRVNDLRPMFGTVHGADDVPrPKPFGDGLLLCAGELGLDaSQCVYVGDAPSDGKAARAAG 226
                 567789999999877522677777899*******************************96369****************98 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0     2e-09   5.1e-07       3     190 ..      48     232 ..      46     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2e-09
   TIGR01428   3 alvFDvyGTLvdvesvveraeellgekeelsqlwrqkqleysrlrtlmgaykdfdeltaealkalleelgleleeaaaerlveavkrLepfpdvaagLkkLker.glklviLsNgstatlkslvkkagldlefdallsadavraYKPapkvYelalealgvkpeevllvasnawDlkgAkklGlktvwv 190
                  ++FD+ GTL d   +  +a +++ +++ lsq++ +   +y+   +l+++   ++    e       +lg +++e  ++++  +  + + f   +  L+++ +   l+l +L+N+  a  +++++ + l+  f  +  ad+v + KP  +   l + +lg++ ++ ++v   + D k+A+++G++++ v
  MMETSP1174-20130828|5773_1  48 GVLFDIDGTLADSWRLGYEATKAVIGDDSLSQEEYHFGCRYTTPERLARHV-GLEP-GTETFATEGVRLGAQFDEMYIAQV--STDTAPLFDGMLPLLNAIGATeALRLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGV 232
                 589*********77677666666666669**99999999999988888732.2222.222333333445555666555554..345566788888999999654159******************************************************************************9865 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.5e-09   2.2e-06      81     211 ..     113     243 ..      99     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 8.5e-09
   TIGR01422  81 elyeafepllleklaeyae.lipgvlevvaklra.rgikigsttGYtrevldvvlkaAaaqGyrpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDtvpdieeGrnAgvwtvgvilssnelglse 211
                 +l ++f ++ ++++++ ++ l  g+l +++++ a + +++g+ t    +  ++vl + + +     +v  addvp+ +P    +l ++ elg++  +++v v+D+ +d +  r+Ag+ ++gv  +sn   + e
  MMETSP1174-20130828|5773_1 113 RLGAQFDEMYIAQVSTDTApLFDGMLPLLNAIGAtEALRLGALTNAAVAYGEAVLRVNDLRPM-FGTVHGADDVPRPKPFGDGLLLCAGELGLD-ASQCVYVGDAPSDGKAARAAGMRSIGVEWGSNVREVLE 243
                 677899999999998766515789*****999762579*****99999999999988777654.4567799*********************95.678****************************9866655 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.027         7       2      13 ..      48      59 ..      47      72 .. 0.77
   2 !   17.9   0.0   2.2e-06   0.00056      93     138 ..     189     232 ..     152     235 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.027
   TIGR01662  2 lvvlDlDgtLid 13
                +v++D+DgtL d
  MMETSP1174-20130828|5773_1 48 GVLFDIDGTLAD 59
                699*******94 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.2e-06
   TIGR01662  93 KpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                 Kp    l+   ++l  +da+++v+vGD + +D +aa+++G++ + v
  MMETSP1174-20130828|5773_1 189 KPFGDGLLLCAGEL-GLDASQCVYVGD-APSDGKAARAAGMRSIGV 232
                 77777777788899.7***********.77***********98766 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.26        68       2      15 ..      48      61 ..      47      78 .. 0.82
   2 !   20.5   0.0   2.9e-07   7.4e-05      87     143 ..     175     230 ..     144     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.26
   TIGR01656  2 alllDrDGvlneds 15
                 +l+D DG+l++  
  MMETSP1174-20130828|5773_1 48 GVLFDIDGTLADSW 61
                589*******9865 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2.9e-07
   TIGR01656  87 vflcphkeedlcdcrKPkpglilealkrlgvdasrslvvGDrldDvqaarkaGaaay 143
                 +f + h+ +d    +KP  + +l  +++lg+das+ + vGD  +D +aar+aG++ +
  MMETSP1174-20130828|5773_1 175 MFGTVHGADD-VPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSI 230
                 4556666555.4668999999********************************9975 PP

>> TIGR01548  HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   5.5e-07   0.00014      71     196 ..     105     224 ..      47     225 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.5e-07
   TIGR01548  71 vrdalelealravfqalYrGkeydrdlaadGfiededlLlakelldaLtradiavavltGrpsdeadvvLdrvGldilgevrialdDaaa.kPnPraliaaaerlgadahsavfvGDtvdDiltark 196
                  + a e  +l a+f+ +Y  +    d +a+ f    +lL a +  +aL      ++ lt ++ +  + vL  + l  ++      dD++  kP   +l++ a +lg da + v+vGD   D  +ar 
  MMETSP1174-20130828|5773_1 105 ETFATEGVRLGAQFDEMYIAQV-STD-TAPLFDGMLPLLNAIGATEALR-----LGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRpKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARA 224
                 5566666677777887777654.222.2333444457777777777777.....8889999999999999999999999999999****99**************************9999888776 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.5e-06   0.00089      85     202 ..     112     230 ..      94     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.5e-06
   TIGR02252  85 eklekifeelyskFataeawkvvedlekllkklreegl.klgvvSNfDsrl.rklLealgleelfdfvvvSaevgaeKPdpkIFekaleklgikpeevlhiGDslekDvegakaaGlral 202
                 ++l   f+e+y    + ++  +++++ +ll+++ + +  +lg + N+   + +++L+   l+ +f  v    +v   KP          +lg+ +++++++GD    D ++a+aaG+r++
  MMETSP1174-20130828|5773_1 112 VRLGAQFDEMYIAQVSTDTAPLFDGMLPLLNAIGATEAlRLGALTNAAVAYgEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAP-SDGKAARAAGMRSI 230
                 555666788888888888888999999999999876655*******9998856899***********************9999999999999***********86.79*********996 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.073        19       2      17 ..      47      62 ..      46      90 .. 0.78
   2 !   12.6   0.0   5.9e-05     0.015      86     194 ..     120     230 ..     104     260 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.073
   TIGR02254  2 ktllfDlDdtlldfea 17
                + +lfD+D+tl d  +
  MMETSP1174-20130828|5773_1 47 QGVLFDIDGTLADSWR 62
                579********99755 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 5.9e-05
   TIGR02254  86 kefl.eileekarllpgAlelleaLkkk..lrlyivtnGvrevqekrlrksglapffdrvlvsEdaGiekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtv 194
                 + +  ++ +++a l +g l ll+a+     lrl+ +tn      e+ lr   l p f +v  ++d+   kP      +    + l +++ ++vGD + +D k a+ aG+ ++
  MMETSP1174-20130828|5773_1 120 EMYIaQVSTDTAPLFDGMLPLLNAIGATeaLRLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAP-SDGKAARAAGMRSI 230
                 4454155678889***********9765569*******************************************999999***************87.799*******9886 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.78     2e+02       3      13 ..      49      59 ..      47      71 .. 0.85
   2 !   12.7   0.0   6.8e-05     0.017      99     181 ..     151     230 ..     120     232 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.78
   TIGR01993  3 llFDlDntLyp 13
                +lFD+D tL +
  MMETSP1174-20130828|5773_1 49 VLFDIDGTLAD 59
                79******976 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 6.8e-05
   TIGR01993  99 rkiiftNadkahaeralkrLgiedcFdgiidieaanlelilKPspeayekalreagvdpekaifldDsarNiaaakalglktv 181
                 r   +tNa +a+ e++l+   +  +F  +   +++      KP  +     + e g+d+++++++ D     +aa+a g++ +
  MMETSP1174-20130828|5773_1 151 RLGALTNAAVAYGEAVLRVNDLRPMFGTVHGADDVPRP---KPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSI 230
                 66679**************************9998765...***************************************975 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.8e-05      0.02      86     196 ..     124     233 ..     108     243 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
   TIGR02247  86 ellssentkllpemvkaikslra.kGfktalltnnlfldkeakeallpsdlgalFDevvEsckeglrKPDariyqlvlerlgvkPeeivfLDDLgsnlkaAaklGittikve 196
                   +s+++ +l+  m  +++ + a + ++ + ltn        +  l + dl   F  v  +      KP      l+   lg+  +++v++ D  s  kaA++ G+ +i ve
  MMETSP1174-20130828|5773_1 124 AQVSTDTAPLFDGMLPLLNAIGAtEALRLGALTNAAVAY--GEAVLRVNDLRPMFGTVHGADDVPRPKPFGDGLLLCAGELGLDASQCVYVGDAPSDGKAARAAGMRSIGVE 233
                 556666677777777777766542457777777766555..34445566777777777666666666666667779999******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 955.18
//
Query:       MMETSP1174-20130828|5775_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 168.95
//
Query:       MMETSP1174-20130828|5772_1  [L=1107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.71u 0.19s 00:00:01.90 Elapsed: 00:00:01.32
# Mc/sec: 1106.91
//
Query:       MMETSP1174-20130828|5777_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|5776_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1801.80
//
Query:       MMETSP1174-20130828|5778_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       372  (0.0906875); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1355.30
//
Query:       MMETSP1174-20130828|5782_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    5.5  16.7        0.7    8.2   0.7    2.4  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.1     0.013        54      32      44 .]      32      44 ..      12      50 .. 0.55
   2 ?    8.2   0.7   0.00017       0.7      25      38 ..     142     155 ..     126     157 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.013
   TIGR03892 32 sSsCsTcsctsSC 44
                +S+++T+++t+ C
  MMETSP1174-20130828|5782_1 32 GSTTTTTTTTTKC 44
                2333333333322 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00017
   TIGR03892  25 gatstsssSsCsTc 38 
                 +a+++sssSs+sT+
  MMETSP1174-20130828|5782_1 142 QASAKSSSSSSSTS 155
                 44455555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 702.65
//
Query:       MMETSP1174-20130828|5783_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 667.94
//
Query:       MMETSP1174-20130828|5785_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.9   0.5      0.032   11.7   0.3    1.1  1  TIGR03338 phnR_burk: phosphonate utilization associated transcriptional regulator


Domain annotation for each model (and alignments):
>> TIGR03338  phnR_burk: phosphonate utilization associated transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   7.8e-06     0.032      82     127 ..       5      57 ..       1      62 [. 0.61

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.8e-06
   TIGR03338  82 adeiyelravldelvgralakrita.......eklkvlkelldeledaakkkd 127
                   e+ +l+a+lde vg++  + ++a       +++k+lk+llde ++  + +d
  MMETSP1174-20130828|5785_1   5 NGEVQQLKAILDEKVGQKQLNDAKAvmqkegnDEVKQLKALLDEKASQKQLSD 57 
                 56999**********97654444431111111567777777776665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|5780_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-08   30.4   0.0    6.6e-08   29.9   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    6.2e-05   20.7   0.0    7.8e-05   20.4   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00071   16.8   0.0     0.0015   15.7   0.0    1.5  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0034   14.6   0.0     0.0049   14.1   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.5e-11   6.6e-08      51     155 ..      50     154 ..      33     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.5e-11
   TIGR01983  51 lkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvad..leeilkecaellkpggilflstin 155
                 +  l++G+GgG ++  +a + a+    D+se++++ Ak+  +++p   + + l +   +  + +++ D + a++v  H++   l + l e+ +llkpgg  f+st n
  MMETSP1174-20130828|5780_1  50 TVALEIGSGGGRVARCVAPHVASLCCADISEKMLTRAKVALEESPN--VTFMLLTRPSFPPRLDATLDFIYAFDVFVHMDLhlLFKYLGEMRRLLKPGGRAFMSTAN 154
                 45699***********************************999997..89****************************97522567799****************98 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.6e-08   7.8e-05      36     136 ..      50     154 ..      34     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.6e-08
   TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...nvqficgdieklpl.ekksfDlivSnlalQW..lddlsevlaelarvlkpgGllafstfg 136
                 + +L+iG+G G + r ++  +    l   Dise+ml +ak +l+   nv+f+     ++p   ++++D+i++  ++    l+ l + l e++r+lkpgG + +st  
  MMETSP1174-20130828|5780_1  50 TVALEIGSGGGRVARCVAPHVAS--LCCADISEKMLTRAKVALEespNVTFMLLTRPSFPPrLDATLDFIYAFDVFVHmdLHLLFKYLGEMRRLLKPGGRAFMSTAN 154
                 578********999999877654..6**************9999999*****99998887515778******999977224678899****************9975 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-06    0.0015      39     140 ..      48     149 ..      35     158 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLp.fednsfdavtiafGlR...NvtdiekaLkelaRVlkpggrlv 140
                 +e+  l + +G G++a  +a ++ a++  +D+se+mL  ak  ++e+   nv+f+     ++p   d+++d +  af +     ++   k L e+ R lkpggr +
  MMETSP1174-20130828|5780_1  48 AETVALEIGSGGGRVARCVAPHV-ASLCCADISEKMLTRAKVALEES--PNVTFMLLTRPSFPpRLDATLDFI-YAFDVFvhmDLHLLFKYLGEMRRLLKPGGRAF 149
                 66778999********9999988.899***********999988654..579999999888885679999987.46665400144445688999******999875 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.8e-06    0.0049      59     143 ..      53     138 ..      40     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.8e-06
   TIGR02021  59 lDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndles....legkfDavvalDvlihYpaediakalerl 143
                 l+ G G G ++  +A + a    +Disek++  a+  +e++    nv+F      s    l+ + D + a+Dv +h   + + k l+++
  MMETSP1174-20130828|5780_1  53 LEIGSGGGRVARCVAPHVASLCCADISEKMLTRAKVALEESP---NVTFMLLTRPSfpprLDATLDFIYAFDVFVHMDLHLLFKYLGEM 138
                 6789****************************9999888776...777766444331112568999999*****998777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 798.70
//
Query:       MMETSP1174-20130828|5787_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 203.06
//
Query:       MMETSP1174-20130828|5786_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.71
# Mc/sec: 1252.97
//
Query:       MMETSP1174-20130828|5788_1  [L=897]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-79  264.7   0.0    2.6e-38  129.8   0.0    3.1  3  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    1.6e-13   48.1   0.0    2.9e-13   47.3   0.0    1.3  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    2.1e-08   32.6   0.0    3.6e-08   31.9   0.0    1.4  1  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   8.8e-31   1.2e-27      39     206 ..     149     323 ..     140     336 .. 0.84
   2 !   36.5   0.0   3.4e-13   4.7e-10     236     394 ..     444     635 ..     441     645 .. 0.74
   3 !  129.8   0.0   1.9e-41   2.6e-38     440     596 ..     724     894 ..     715     895 .. 0.88

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 8.8e-31
   TIGR01931  39 qeeaalavaaaeaeekaakekevtilyasqtGnarrlakklaekleaaglkvklvsakdykake..lkkekllllvistqGeGepPeeaislhkflask.ka.PklenlkysvlgLGDssYeffCqagkdfDkrleeLGgkrllervdaDv...dyeaaaaeWseevlkalkeka 206
                 ++++ +++ ++++ +   +++ v i y+sqtG a+++a++l ++ +++g+ ++ ++++++k+ e  l + +l ++vist G+G+pP  + +l++f++ k +a   +e+++++vl+LGD+ Y++fC +gk f +r++eLG+ + ++   aD    +++++ ++W + ++kal   +
  MMETSP1174-20130828|5788_1 149 SNNSPTKILKTTSSSGVGDSQPVYIGYGSQTGCAKSIAQNLLARCRDTGIPAECMELDKWKTMEpgLSDLRLAVVVISTTGDGDPPMGSEKLYRFIKRKsQAtTLMEKTQFAVLALGDTNYDKFCFMGKFFHRRMKELGAAAFKDLTMADEgtgQLDEVVEDWLDAIVKALGPLV 323
                 333444445555555555566899*************************************9876699****************************876334145799*************************************9999963337899**********9987655 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 3.4e-13
   TIGR01931 236 eaevlenqkit..grdskkdvrhieldled....sglkyepGDaLGvwykndpa....lvkeilellsldadekvtvk...........eevlslkeaLakkfeltk.ltkallkkyaela....kneeLkklva....dkeklkayiant..dlvdlvrdypakldaeeliel.LrpltprLYsiassqke 394
                 ea+v   + +t  g +++++v h+el++ +    s++ y++GDa+G++  n+pa    +++ +++   +d+d+   v            e++l+l++ L + ++l+  l + ++++ a+ a    +++ L++l       k+  +a+++++  +lv+l++ +p      +li++ L +l+pr Ysiass   
  MMETSP1174-20130828|5788_1 444 EATVTDARYLTsgGAKAERRVVHVELQIANnnneSKMAYKVGDAVGLRCPNNPAdaasMLRLLVDRTGVDPDAPFLVVdketgrpcgsdEQTLTLRRLLREVVDLSApLRPGIVRALAQHAsdpvEAQILHALTRksgeGKRAFDAFVSGQalHLVELLECFPSCSPPMALIAAsLPRLAPRFYSIASSPVS 635
                 5666666666622567789*********752222779************9998633347777888889999998665334566667676899*************97345568877777652222578888888765545667889998763368********888888888654999**********9654 PP

  == domain 3    score: 129.8 bits;  conditional E-value: 1.9e-41
   TIGR01931 440 nenfrlPedkdtpiimigpGtGvaPfraflqereeegae.......GknWlffGnphfaeDfLYqveWqkylkkgvltkldlafsrDqkekiYvqdrlreqgkelfeW.lqeGahiYvCGdakkmakDvekaLldviake......galdaeeaeeyleelrkekrYqrDv 596
                   +f lP d+  p+imigpGtGvaPf +f+ er +++ +       G+  l++G ++ ++D+LY+ +   +  +gvlt+l  a+srD   k Yvq+ + e ++el +  lq+Ga +++CGd ++ma Dv++aL+ ++a++      +++++ +a+e l+++++e rY  D+
  MMETSP1174-20130828|5788_1 724 ATDFTLPGDPSIPVIMIGPGTGVAPFMGFIAERRAQKKNsmagklvGDMLLYYGGRNESKDWLYREDMLLAQEDGVLTRLRTAWSRDGPAKRYVQHCMEEDADELGRLiLQQGAFVFICGDGRHMAPDVHAALVRIVANAceggdiASVKETKAAELLATMKHEGRYVADI 894
                 678*****************************998765434434448899*******************************************************98637***************************98633222235677889*************9998 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   2.1e-16   2.9e-13     258     389 ..     725     863 ..     722     889 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 2.1e-16
   TIGR03224 258 stflmpnhpessilmictgtgsapmramterrrrrrakgeggkl....llffgartke.elpyfgplqklpkdfidinf..afsrtpeepkryvqdaireraadvaallkddntyiyvcgl.kgmeegvlealrevaeaa 389
                 + f +p  p+  ++mi  gtg ap+  +   rr +++++++gkl    ll++g r+++ +  y   +     d + +++  a+sr+ +  kryvq ++ e a+++++l+ ++++++++cg  + m   v  al  ++++a
  MMETSP1174-20130828|5788_1 725 TDFTLPGDPSIPVIMIGPGTGVAPFMGFIAERRAQKKNSMAGKLvgdmLLYYGGRNESkDWLYREDMLLAQEDGVLTRLrtAWSRD-GPAKRYVQHCMEEDADELGRLILQQGAFVFICGDgRHMAPDVHAALVRIVANA 863
                 67999*******************88777666666666655554222289*****9861566777777777776655442288886.5679*****************************63789999999998887664 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.6e-11   3.6e-08       1     125 [.     171     301 ..     171     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2.6e-11
   TIGR01753   1 ilivYaSmtGnteeiAeiieeglkeagaevdllevadvdkedlleyD..avllGcstwgdedle..eddflpfve..eleeidlegkkvalfGsgdtay.efceavdkleerlkeaGakiiaeglkveedpe 125
                 ++i Y+S+tG   +iA+ +    ++ g+ ++++e  + ++ +   +D   +++  st+gd+d +  ++ +  f++  + + + +e+ + a+++ gdt+y +fc + + ++ r+ke+Ga+ ++ +l++ ++  
  MMETSP1174-20130828|5788_1 171 VYIGYGSQTGCAKSIAQNLLARCRDTGIPAECMELDKWKTMEPGLSDlrLAVVVISTTGDGDPPmgSEKLYRFIKrkSQATTLMEKTQFAVLALGDTNYdKFCFMGKFFHRRMKELGAAAFK-DLTMADEGT 301
                 6788*****************************999888665444442257778888888887766999999*972244557789999*******************************998.666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 2152.62
//
Query:       MMETSP1174-20130828|5790_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    6.5   7.5        2.1    7.3   2.3    1.9  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.3   0.00052       2.1      13      41 ..       6      34 ..       3      39 .. 0.90
   2 ?    1.4   0.1     0.036   1.5e+02      13      25 ..      39      51 ..      35      53 .] 0.58

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00052
   TIGR04101 13 kskakqekleleaieqaeqseekvaaeie 41
                +++a+q +le+ea++ ++  e+++aae+ 
  MMETSP1174-20130828|5790_1  6 EAAAEQARLEAEAAVGKASLEAEAAAEKT 34
                799**********************9975 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.036
   TIGR04101 13 kskakqeklelea 25
                +++a+q +le+ea
  MMETSP1174-20130828|5790_1 39 EAAAEQARLEAEA 51
                4566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|5790_2  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 211.98
//
Query:       MMETSP1174-20130828|5791_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.3   0.0       0.58    7.1   0.0    2.1  2  TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase


Domain annotation for each model (and alignments):
>> TIGR02662  dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00014      0.58       1      36 [.       8      45 ..       8      52 .. 0.79
   2 !    6.3   0.0   0.00025         1      47     113 ..     107     177 ..     103     203 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00014
   TIGR02662  1 lreralaaylGlavGdalGatveflt..kgeikakyGv 36
                +++r  +a +Gl  Gdal  +  +    k +++++yG+
  MMETSP1174-20130828|5791_1  8 VESRVRGALWGLFAGDALAMPSHWYYggKRQVQQDYGR 45
                689***************99988765115568888886 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00025
   TIGR02662  47 rlkkGqvtddtemslalgraila.agefdvtaiaeefaawlk...skPvdvGntvrrGirrfmlkGtlaap 113
                  lk+G  t ++++  +l r++++  g f++ a+ e++++++    s+      t+ r     m +G l+ +
  MMETSP1174-20130828|5791_1 107 TLKAGENTLEAQLVRVLMRSVVRsGGSFEPSAFREDYVEFMTregSHNDTYASTCHRMFFANMIHGGLNPE 177
                 5999******************95689*************9733345555689999999999999877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 762.60
//
Query:       MMETSP1174-20130828|5789_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   10.7   0.0      0.048   10.4   0.0    1.1  1  TIGR03530 GldJ_short: gliding motility-associated lipoprotein GldJ


Domain annotation for each model (and alignments):
>> TIGR03530  GldJ_short: gliding motility-associated lipoprotein GldJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.2e-05     0.048      38      98 ..      92     151 ..      70     170 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.2e-05
   TIGR03530  38 tgaefsfeenee.tnffvadyaeqiegpnlkyieggravlgsfeedlmkfrdnlertvtvas 98 
                  g +f fe  e+ +n +v + ae   gp  k +  g +v g     lm ++d l r vt+a 
  MMETSP1174-20130828|5789_1  92 IGFKFRFEPXEKkKNVHVRHSAE--AGPSHKRVPNGHTVEGECAICLMDMGDSLARPVTLAC 151
                 68899999766516778887776..69********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 799.70
//
Query:       MMETSP1174-20130828|5792_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 260.10
//
Query:       MMETSP1174-20130828|5793_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|5794_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 633.55
//
Query:       MMETSP1174-20130828|5798_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1082.31
//
Query:       MMETSP1174-20130828|5799_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|5800_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   13.9   0.1     0.0038   13.8   0.1    1.0  1  TIGR00437 feoB: ferrous iron transport protein B
  ------ inclusion threshold ------
      0.017   12.0   1.5       0.02   11.7   1.0    1.0  1  TIGR00984 3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
      0.027   12.7   0.6      0.054   11.7   0.4    1.5  1  TIGR00988 hip: integration host factor, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.8e-06    0.0038     178     267 ..      12     100 ..       2     110 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-06
   TIGR00437 178 vkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtkvldrflglliilsvvflllll 267
                  + kl+++++k+++++ev+++++++     eki+  ++++ + ++ s+ ++++ a+e k ++  ++ ++++  f+++li + ++ +++  
  MMETSP1174-20130828|5800_1  12 SRDKLDVVTKKVEQTKEVMLENIDKILERGEKIDMLVEKSEELNE-SAFTFQRSAKELKKTMLCKRIKTAICAFIVFLICVLFLSIVFCG 100
                 456778888899999999999999999999999766666655554.47777777777655554444445455666666666666666654 PP

>> TIGR00984  3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   1.5e-05      0.02      52     119 ..      17      81 ..       9      84 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.5e-05
   TIGR00984  52 evvkkkleklgekvkkivdkvskselgkkikkavaeaaktakkaaekvdksaekvretavykevsqsv 119
                 +vv kk+e++ e + + +dk+ +   g ki   v+++  + +++a   ++sa+++++t + k++++++
  MMETSP1174-20130828|5800_1  17 DVVTKKVEQTKEVMLENIDKILE--RGEKIDMLVEKSE-ELNESAFTFQRSAKELKKTMLCKRIKTAI 81 
                 689******************86..6888887777776.66799********************9987 PP

>> TIGR00988  hip: integration host factor, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4     4e-05     0.054      15      45 ..      16      46 ..       9      71 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   TIGR00988 15 shlsakdvekavktlleelaealarGdriei 45
                 ++ +k+ve+  + +le++ + l rG++i++
  MMETSP1174-20130828|5800_1 16 LDVVTKKVEQTKEVMLENIDKILERGEKIDM 46
                56889************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       412  (0.100439); expected 82.0 (0.02)
Passed bias filter:                      308  (0.0750853); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 455.96
//
Query:       MMETSP1174-20130828|5797_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 1961.42
//
Query:       MMETSP1174-20130828|5803_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|5802_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1460.88
//
Query:       MMETSP1174-20130828|5804_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   13.0   0.1     0.0096   12.7   0.1    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.3e-06    0.0096     259     313 ..      33      87 ..      17     209 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.3e-06
   TIGR02037 259 kG.alvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklk 313
                 +G alv+++ ++s A + G+++G  i++++g++ik ++++++ i++++    ++++
  MMETSP1174-20130828|5804_1  33 SGwALVQSIGRNSEALRHGVQVGHRIVAIDGNPIK-FSQFSSFIQSMPRPVVLTFQ 87 
                 3359******************************6.78888888888766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1277.08
//
Query:       MMETSP1174-20130828|5808_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1060.17
//
Query:       MMETSP1174-20130828|5809_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 736.09
//
Query:       MMETSP1174-20130828|5806_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1174-20130828|5811_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1875.47
//
Query:       MMETSP1174-20130828|5812_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   21.8   0.0    4.1e-05   21.0   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00078   16.8   0.0     0.0014   16.0   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0044   14.3   2.1      0.014   12.7   0.0    2.3  2  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
  ------ inclusion threshold ------
      0.013   13.6   0.0      0.032   12.4   0.0    1.7  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.021   11.2   0.0       0.03   10.7   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.072    9.9   0.9      0.094    9.5   0.0    1.6  2  TIGR00692 tdh: L-threonine 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     6e-08   4.1e-05     158     200 ..     145     188 ..     137     194 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6e-08
   TIGR00406 158 lkdkkviDvGcGS.GiLsiaalklgaakvvavDiDplavesark 200
                 +++++v+DvG+G   iL+i a+k ga+kv+a++  p a + ar+
  MMETSP1174-20130828|5812_1 145 QEGQVVVDVGTGPfAILAILAAKAGAKKVYAIESSPEAARRARE 188
                 5679********658***********************999987 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06    0.0014      80     130 ..     138     188 ..     129     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2e-06
   TIGR03534  80 aleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvark 130
                 + ++l+ +e   v+D+gtG  aI   la++    kv+a++ s+eA++ ar+
  MMETSP1174-20130828|5812_1 138 IRRRLDGQEGQVVVDVGTGPFAILAILAAKAGAKKVYAIESSPEAARRARE 188
                 555667777789**********************************99997 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     2e-05     0.014      67     132 ..     129     192 ..     112     200 .. 0.85
   2 ?    0.1   0.5      0.14        98      85     126 ..     228     270 ..     215     280 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2e-05
   TIGR03704  67 rrrteflvdeavalakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnlad 132
                 rr  +f   +a+ +  + ++ +vvvd+  G  a+ a laa+  a +++a++  p a r ar  +++
  MMETSP1174-20130828|5812_1 129 RRTPQF--AKAIRRRLDGQEGQVVVDVGTGPFAILAILAAKAGAKKVYAIESSPEAARRAREFITK 192
                 554454..35666666666678***************************************98766 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.14
   TIGR03704  85 sarlvvvdlccGsGavgaal.aaaldavelhaad.idpaavrca 126
                 +a l+v++  cGs a    + a+  da    a d +dpaav  a
  MMETSP1174-20130828|5812_1 228 KADLIVAE-VCGSIASEEGIiATLADARARFAKDpMDPAAVMPA 270
                 34455555.56777766555044445555566665899999765 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.7e-05     0.032      15      61 ..     142     188 ..     137     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.7e-05
   TIGR02469  15 LrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealeliee 61 
                 L  ++g+v++D+G G   +   +a  ++  +vyaie ++ea++  +e
  MMETSP1174-20130828|5812_1 142 LDGQEGQVVVDVGTGPFAILAILAAKAGAKKVYAIESSPEAARRARE 188
                 5667899******99888766677777778***********987765 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.3e-05      0.03     268     326 ..     132     190 ..      99     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.3e-05
   TIGR04074 268 eqRleavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrl 326
                  q ++a+  +l   + + v+D+G+G  ++l+ L+a++ ++k+ +++ s ++ ++a++ +
  MMETSP1174-20130828|5812_1 132 PQFAKAIRRRLDGQEGQVVVDVGTGPFAILAILAAKAGAKKVYAIESSPEAARRAREFI 190
                 55678899999999**********************************99999998755 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1       2.2   1.5e+03     164     178 ..      69      83 ..      65      87 .. 0.78
   2 ?    9.5   0.0   0.00014     0.094     157     203 ..     143     187 ..     131     196 .. 0.76

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 2.2
   TIGR00692 164 svlvsGaGpiGllav 178
                   lv+GaG +G+ a+
  MMETSP1174-20130828|5812_1  69 AGLVIGAGVVGIPAL 83 
                 56899***9999776 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00014
   TIGR00692 157 esdlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelak 203
                 +++  G+ v+ +G+Gp  +la+  ak aGa++v +++ +    + a+
  MMETSP1174-20130828|5812_1 143 DGQ-EGQVVVDVGTGPFAILAILAAK-AGAKKVYAIESSPEAARRAR 187
                 444.57788889**********8887.69****99998765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1611.66
//
Query:       MMETSP1174-20130828|5810_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-30  102.9   3.8    5.1e-30  102.8   2.6    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.4e-24   83.8   3.1    3.2e-24   83.4   2.1    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.6e-22   76.4   2.3    6.4e-22   76.2   1.6    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    6.4e-22   76.0   3.6    1.1e-21   75.3   2.5    1.4  1  TIGR02415 23BDH: acetoin reductases
    4.9e-19   66.6   2.8    6.2e-19   66.3   2.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    5.4e-18   62.5   4.3    7.2e-18   62.1   3.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.2e-16   58.6   9.3    1.4e-16   58.4   6.5    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.3e-13   48.7   7.8    1.9e-13   48.2   5.4    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.4e-13   47.9   0.4    3.1e-13   47.5   0.3    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    4.4e-10   37.2   5.9    1.5e-08   32.2   4.1    2.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    9.5e-06   23.1   0.2    1.2e-05   22.8   0.2    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.4e-05   20.9   1.2    0.00014   18.8   0.1    2.0  2  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0022   14.8   4.0     0.0052   13.5   1.8    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
       0.03   11.7   0.2      0.091   10.1   0.1    1.7  2  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   2.6   1.7e-32   5.1e-30       1     218 [.       9     230 ..       9     256 .. 0.88

  Alignments for each domain:
  == domain 1    score: 102.8 bits;  conditional E-value: 1.7e-32
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGi..trDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdm..teklsekvkkkileqiplkrlgkpeevaaavaf 218
                 al+tGas giG++ia++la++g+++vit r++   ++ ++e  +e+gv+++++  d+s ++ + +l ++v++     +++v nAG+  t     +  +ee+ ++++++n+ ++  ++++  + +  + +Gri+ issv + +G    a YaasKa +  l +s+  +l+ +++ + ++ PG  +t++  t ++++ +  ++l +  l+ + ++++va++va 
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSSEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGValTGSVETIAAQEERVQAMLALNVASTTLLAHSYGTDLAAQGFGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFaaTGEMESALIFRALGARILGAVLQASDVAEVVAA 230
                 79**************************887766666666666789***************************************9334455678999***************************************************************************************984477899999999999999************9874 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   2.1   1.1e-26   3.2e-24       4     187 ..       9     195 ..       6     203 .. 0.92

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 1.1e-26
   TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaake.leeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefp..tekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpL 187
                 al+tGa+sGig++ia++la+ G ++v++  +e  + ++a+e  +e g++v+ +  d++  +    l +av+a   + +++v nAG+     +e  +  +e+ ++++a+n+ s+  + +     + +qg+Gri+ i+sv + v+    +aY a+K  +  l +++  +   +g+ + +i Pg  +t  
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEElSSEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIAaqEERVQAMLALNVASTTLLAHSYGTDLAAQGFGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNF 195
                 89***************************998777666555157789**************99999999999999******************9872257899******************************************************************************988875 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   1.6   2.2e-24   6.4e-22       3     189 ..       9     197 ..       7     254 .. 0.87

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 2.2e-24
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkm..tkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 al+tG++ GiGt+i++ la+ Gy++v + + +    +  ++ ++  g +v+v+  d+s  + a a  + v+a     +v+v naG++    ++ +  ++e+ +++++ n+ s   +++    +++ +gfGri+ issv    G    a y+a+ka +  + +++ ++ + kgv++  i PG ++t+  +
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSSEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIaaQEERVQAMLALNVASTTLLAHSYGTDLAAQGFGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFAA 197
                 9*************************99998888877777777788889***********************99999********9988888776225677899********************************************************************************99765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   2.5   3.7e-24   1.1e-21       3     229 ..       9     228 ..       7     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 3.7e-24
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelk.ekgtkavavkldvsdkseveeaveqavekl.GeldvlvnnaGvalvtpilei..teeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelv 229
                 al+tGa+ GiG++ia+ La+ G++++++  +e  +   a+el+ e g + +++ +d+s ++   ++ ++av+ +    +v+v naGval+ ++++i  +ee+++ + ++nv+++     +  + +  ++  G+i+  +s+++ +g+   +ay+++k  +r l ++   +L++kg+++ +  PG  +t+  ++ + +         +  +++   +i lG + + +dvae+v
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSsEYGVQVKVIISDLSARDGAYAL-RKAVTAVrVAPEVVVLNAGVALTGSVETIaaQEERVQAMLALNVASTTLLAHSYGTDLAAQG-FGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFAATGEME--------SALIFRALGARI-LGAVLQASDVAEVV 228
                 9************************************999997256999***********988755.566655515779**************998445899***********9876665555555443.49****************************************************999876543333........233334444444.45566666666666 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   2.0   2.1e-21   6.2e-19       7     191 ..       8     196 ..       5     239 .. 0.90

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 2.1e-21
   TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvgise...lsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr..edavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnt 191
                  al+tGa++G+G  ia +la+ G ++v ++++e   +s ++e  ++ G +++ +  dl+  ++a al + +++     +++v naG+      ++++ +e+  +++l +n+ +  ll+++ + +l +qG  g+i+ i+s+ +  G    ++y+ask  +  l +++ ++++ kg+ +  i PG  +tn +
  MMETSP1174-20130828|5810_1   8 YALITGASSGIGTEIARSLARRGYNLVITARREgplVSLAEELSSEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTgsVETIAAQEERVQAMLALNVASTTLLAHSYGTDLAAQG-FGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFA 196
                 69***********************9999988733234556667789******************9999988888899********9765115677888999***************************.**********9999999999**********************************999865 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   3.0   2.4e-20   7.2e-18     414     598 ..       6     190 ..       2     197 .. 0.90

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 2.4e-20
   TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleete..leeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPda 598
                 +  al+tG++sGiG e+ar l+ +G  +v++   +  + + a+el +++G +  v +  d+  ++   a  ++v+      ++vv naG+a +  +e     +e  +  l++++    l+a+     l +qg g  +v+i+s+ a v  ++a ay+a+ka   hl r + ++l+++g+ +  + P a
  MMETSP1174-20130828|5810_1   6 NTYALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSSEYGVQVKV-IISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIAaqEERVQAMLALNVASTTLLAHSYGTDLAAQGFG-RIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGA 190
                 56799*********************************************98665.668****999888888888888889**********999988776225557778999********************96.8******************************************999998865 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   6.5   4.8e-19   1.4e-16       2     232 ..      10     245 ..       9     256 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 4.8e-19
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpals..eedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd..l.kealklvpmkrvgkaeevaalaaf.lmsddaayvtrqvi 232
                 l+tgas gig  ia  la  g+++ +  r++      + +     g++++++  d++ r  + ++ +a  a + a   vvlnag+a   +  +++  ee  +a++  n+ +   + h      + a+  gri+ ++sv+  +g r    y+a+ka +    +++  +l+ + +++ ci pg  dt++ a+ e +  l  +al    +  v +a++va ++a  + s  ++ vt  v+
  MMETSP1174-20130828|5810_1  10 LITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSSEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIAaqEERVQAMLALNVASTTLLAHSYGTD-LAAQGFGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFAATGEMEsaLiFRALGARILGAVLQASDVAEVVAArIDSGRSGEVTPGVL 245
                 89*************************999977665554445567******************999999999*************9998887664216778899999999988888877655.567777*********************************************************998655441131355555555666699999988765155666777776553 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   5.4   6.5e-16   1.9e-13       5     191 ..       8     197 ..       5     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 6.5e-16
   TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaair.ekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpf..lktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                  a++tg + gig+ i r +a+ g ++ +          +a+++  e g + + +  d++ r+   a   a++      +v+v nag    ++   + +++ + + ++a+n+  +  + h+    +  ++ griv i+s +a vg    a yaa k  +  + +++  +l+ +g+++  + pg tdt + +
  MMETSP1174-20130828|5810_1   8 YALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAEELSsEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVetIAAQEERVQAMLALNVASTTLLAHSYGTDLAAQGFGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFAA 197
                 689**********************99988888888999999972567789999********9887777777776777999*****9988765113455666777899******************************************************************************8754 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.3   1.1e-15   3.1e-13       1     200 [.       7     195 ..       7     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 1.1e-15
   TIGR01500   1 vlllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                 +++l+tGas G+G e+a+ la+    +g  lv+ aR +  L ++ +e+ +   + +v+    dl+a  +   l ka+ +     e    +++ naG    ++  e   +  + vq   ++nv s   l+ +    l  +qg  ++ v +ss++a   ++s a Y aska+   + + +  + + + v +    pG  Dt+ 
  MMETSP1174-20130828|5810_1   7 TYALITGASSGIGTEIARSLAR----RGYNLVITARREGPLVSLAEELSS-EYGVQVKVIISDLSARDGAYALRKAVTAVRVAPE----VVVLNAGVA-LTGSVETIAAQEERVQAMLALNVASTTLLAHSYGTDLA-AQGFGRI-VLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSpKGVAMTCIFPGATDTNF 195
                 699*******************....899********************9.78999************99999999988766554....567788854.4455555467899*******************999999.8999985.6699999*9***************8888888887777555666667777777766 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   4.1   5.2e-11   1.5e-08       6     243 ..       9     229 ..       5     248 .. 0.68

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.2e-11
   TIGR03971   6 alitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafel..seeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvva 243
                 alitGa+ G G   a  la+ G +++     e     v    +  e+l        + G +v +  +d+   +   a  +   ++    +vvv naGv+  g++  +  +ee+ + +l +n+  +    ++    l  ++  G i+++ssv++ +++   a yaa+k  +  l +++  +l++ g+ +  i P + dt+  +++ m +++  r   ar       + +++++ dva+vva
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREGP--LV----SLAEELS------SEYGVQVKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIaaQEERVQAMLALNVASTTLLAHSYGTDLAAQG-FGRIVLISSVTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGATDTNFAATGEMESALIFRALGAR------ILGAVLQASDVAEVVA 229
                 6667777777776677777776666543322222..12....1122222......223333333333333333222222222222334589*******999987665226888999999999999888887777776666.89*********************************************************998888776655444444......3445555666666654 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2     4e-08   1.2e-05       6     147 ..       9     149 ..       4     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4e-08
   TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrd...lekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadg.yelsvatnhlghfllsnllledlkksdekdkrliilgsvtan 147
                 ++itgassg+g + a++l+ +g   v+ a r+   +  ae+ + + g+      ++  dl+  d    + +   +   + +++v na v l    e + + ++  +  +a n     ll++    dl +  +   r++++ svta 
  MMETSP1174-20130828|5810_1   9 ALITGASSGIGTEIARSLARRGYNLVITARREgplVSLAEELSSEYGVQ---VKVIISDLSARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIAAQEErVQAMLALNVASTTLLAHSYGTDLAA--QGFGRIVLISSVTAS 149
                 79********************666666666633334455555555554...567888***999887777777777778899********999888887765426677788888889999988888854..556788888888875 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.9e-07   0.00014       4      64 ..       9      68 ..       6      84 .. 0.88
   2 ?    0.8   0.1      0.16        47     161     205 ..     146     190 ..      99     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.9e-07
   TIGR02685  4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsns 64
                al+tGa+  iG+ ia  l ++Gy++v+  rr ++  +sla+el +e      v+ +dls  
  MMETSP1174-20130828|5810_1  9 ALITGASSGIGTEIARSLARRGYNLVITARR-EGPLVSLAEELSSEYGVQVKVIISDLSAR 68
                99*************************9876.78899********9999998999999875 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.16
   TIGR02685 161 amtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl 205
                   ++  + + + y+ +k  +  l rs   +l+++++ + ++ pG 
  MMETSP1174-20130828|5810_1 146 VTASVGVRSAAAYAASKAYIRHLGRSMRADLSPKGVAMTCIFPGA 190
                 444556667778888888889999999999999999888888885 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.8   1.8e-05    0.0052       3      67 ..       9      83 ..       7     172 .. 0.61
   2 ?   -1.6   0.0      0.71   2.1e+02     203     224 ..     218     239 ..     184     241 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-05
   TIGR03466  3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnle.......eldvEiveGdlkdea...slkkalkGcea 67
                +l+tGa+  +G++++r+l+++G+++ + +r++ +   l+       +++v ++  dl+ ++   +l+ka++ +++
  MMETSP1174-20130828|5810_1  9 ALITGASSGIGTEIARSLARRGYNLVITARREGPLVSLAeelsseyGVQVKVIISDLSARDgayALRKAVTAVRV 83
                89************************9999998876654211122235666777887654322367777777765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.71
   TIGR03466 203 lvdvddvaegHllAlerGriGe 224
                 +++  dvae   + ++ Gr+Ge
  MMETSP1174-20130828|5810_1 218 VLQASDVAEVVAARIDSGRSGE 239
                 5677889998888999999998 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00031     0.091       2      34 ..      10      42 ..       9      61 .. 0.88
   2 ?   -1.0   0.0      0.77   2.3e+02      85     127 ..      66     108 ..      43     113 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00031
   TIGR01777  2 litGgtGliGralveelekkghevviltrskek 34
                litG++  iG++++++l ++g+++vi +r++  
  MMETSP1174-20130828|5810_1 10 LITGASSGIGTEIARSLARRGYNLVITARREGP 42
                8****************************9875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.77
   TIGR01777  85 SRikttealvelikkakqkpkvlisasavgyYgeseekeltee 127
                 S  + + al +++++ +  p+v++  ++v+  g+ e+ + +ee
  MMETSP1174-20130828|5810_1  66 SARDGAYALRKAVTAVRVAPEVVVLNAGVALTGSVETIAAQEE 108
                 4456778899999999999999999999998888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1027.37
//
Query:       MMETSP1174-20130828|5813_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1196.70
//
Query:       MMETSP1174-20130828|5815_1  [L=1854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   20.7   0.0     0.0056   12.6   0.0    2.2  2  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
     0.0002   17.7   0.1      0.027   10.6   0.0    2.8  3  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
     0.0012   14.8   0.2        1.3    4.7   0.0    3.0  3  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.018   12.4   0.0      0.051   10.9   0.0    1.7  1  TIGR01261 hisB_Nterm: histidinol-phosphatase
      0.019   10.6   0.1       0.88    5.0   0.1    2.9  3  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0   0.00089      0.73     377     448 ..    1426    1500 ..    1420    1509 .. 0.85
   2 !   12.6   0.0   6.8e-06    0.0056     718     856 ..    1567    1712 ..    1552    1770 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00089
   TIGR00609  377 IDEFQDtDpqQyrIFsklfiaqk.etaLfLIGDPKQaIYs...FRgADiftY.lqakekararytLdtNyRStaaLv 448 
                   DE QD    Q ++   l +  k  ++LfL GD  Qa+     FR  D+ t   +a +k+++   L  NyRS+    
  MMETSP1174-20130828|5815_1 1426 ADEVQD--STQCEVTLMLLSCGKdANGLFLAGDTAQAVTHgvvFRFPDVRTViHRANGKIDRPEKLWRNYRSHSGVL 1500
                  589997..57888888888877779*************75555********9789*****************98765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.8e-06
   TIGR00609  718 iirlesDaelvkivTiHkSKGLeypiVflpfitdakksdds..laiyhdd.esrkllldlakleeq....akklaederlaedlrllYVAlTRAkkqlviglaelvkskskelaklllhksalgylkqdgetdeitglkqklakla 856 
                  + +l s++++ ++  i  +KGLe++ V++ + +    + ++   +++ ++  s   + +l k+e+q    a +l    +l  dl++lY A+TR +  lv+     +   +k +++  +++++ +   + + +++ +++  ++++  
  MMETSP1174-20130828|5815_1 1567 AAQLTSEDQTHQVLGIREAKGLEFNDVLIVNFFLTATHLEKgwRKLLDFRwSSSPDESNLPKTEKQleieAAGLDLPSELEVDLKMLYTAITRCRNRLVLCETDQSSVWKKFIRRFKETEQQVSTHEPPKGKQATIMMPDEWRARG 1712
                  67899*******************9888776554444333445333333312333444555555554344556666678899******************9887776666667777777766666665555555666666666655 PP

>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.23   1.9e+02       8      38 ..    1140    1170 ..    1138    1174 .. 0.89
   2 !   10.6   0.0   3.3e-05     0.027     163     291 ..    1366    1505 ..    1347    1512 .. 0.74
   3 !    3.4   0.0    0.0049         4     581     619 ..    1640    1678 ..    1630    1690 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.23
   TIGR01073    8 eqkeavkttegPLLilaGaGsGktrvLthri 38  
                   q+e + + +g +L+l  +G+Gkt  ++ r+
  MMETSP1174-20130828|5815_1 1140 AQEERIVNKDGAVLLLGRSGTGKTVCVAMRM 1170
                  688999999***************9988886 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 3.3e-05
   TIGR01073  163 ekvvaevyeeyqkkLlrnnal.....DfdDL...ilttieLfekvpdvleyyqrkfryilvDeyqDtnraqytlvrlLaer.sknlcvvGDaDqsiyg...frgaditniLsfekDypdatvilLeqnyrstkniLqaane 291 
                    ++ ++ye+yq++L++++ +     ++dD    + +  +L++ v   +  y   f+ i+ De qD  +   tl+ l + +  + l+  GD+ q++     fr  d++ +++  +   d +  +L +nyrs   +L+ a++
  MMETSP1174-20130828|5815_1 1366 RSTAYDMYEAYQNHLMKTHNFgpdnfNWDDCdrtLNLLGSLLSGVGIPAGSYWPPFDRIYADEVQDSTQCEVTLMLLSCGKdANGLFLAGDTAQAVTHgvvFRFPDVRTVIHRANGKID-RPEKLWRNYRSHSGVLEFASS 1505
                  4567799********99987533222455541113334456666666788999******************999887766625669*********964344*******99986655444.335899**********99886 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0049
   TIGR01073  581 ledekeleeerrlayvgitraeeeLyltkaksrllfgrl 619 
                  l+ ++ele + ++ y +itr +++L+l ++   +++ + 
  MMETSP1174-20130828|5815_1 1640 LDLPSELEVDLKMLYTAITRCRNRLVLCETDQSSVWKKF 1678
                  5567899999*********************99999875 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.026        21     120     151 ..     309     340 ..     301     348 .. 0.81
   2 !    4.6   0.0    0.0018       1.4     129     160 ..     389     420 ..     349     426 .. 0.89
   3 !    4.7   0.0    0.0016       1.3     131     160 ..     499     528 ..     490     537 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.026
   TIGR00870 120 andestseftkgitalilAihkqnyeivklLl 151
                 + ++++ +   g+t+l+lA + q  ++v   +
  MMETSP1174-20130828|5815_1 309 QANSDLPRAVDGKTPLHLALEMQHSTVVDCVM 340
                 55667778889************999997655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0018
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvear 160
                  +g t l+lA+++++  +v++L+ +  +v+++
  MMETSP1174-20130828|5815_1 389 DHGYTVLHLAVQRRQESLVSMLMPRMRDVNVA 420
                 5899*********************9999954 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0016
   TIGR00870 131 gitalilAihkqnyeivklLlekgasvear 160
                 g t l++Ai     ++vk+L++kga+v++r
  MMETSP1174-20130828|5815_1 499 GSTVLHVAITAFLDKVVKVLVAKGANVNLR 528
                 7899***********************965 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.3e-05     0.051      33      96 ..    1539    1601 ..    1534    1614 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.3e-05
   TIGR01261   33 kvipallklkeagyklvlvtnqdGlGtesfPkedfdkphalmlqifkseGivfddvlicphfle 96  
                   +i  l    +++ +lv++t  + +G  +   ++ d++h++ l i +++G++f+dvli + fl+
  MMETSP1174-20130828|5815_1 1539 MAIDLLKDALALDERLVVITRDENVGRLAAQLTSEDQTHQV-LGIREAKGLEFNDVLIVNFFLT 1601
                  56666667778899***************999999999975.89**************998875 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.35   2.8e+02       5      40 ..    1140    1175 ..    1139    1190 .. 0.80
   2 ?    1.4   0.0     0.013        11     385     432 ..    1417    1462 ..    1411    1506 .. 0.76
   3 ?    5.0   0.1    0.0011      0.88     857     905 ..    1647    1693 ..    1556    1705 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.35
   TIGR02785    5 eQweaivakgqdiLVsAsAGSGKTaVLveRiikkil 40  
                  +Q e iv+k+  +L     G GKT+ ++ R+ +  +
  MMETSP1174-20130828|5815_1 1140 AQEERIVNKDGAVLLLGRSGTGKTVCVAMRMHRDQT 1175
                  69999*********************9999976544 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.013
   TIGR02785  385 yrekFeEvlvDEYQDtnlvQEsilqllkrgeeeegnlFmVGDvKQSIY 432 
                  y   F+ +  DE QD+ +  E  l ll+ g ++ + lF+ GD  Q + 
  MMETSP1174-20130828|5815_1 1417 YWPPFDRIYADEVQDSTQC-EVTLMLLSCG-KDANGLFLAGDTAQAVT 1462
                  6667999********9986.8889999998.55599*******99874 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0011
   TIGR02785  857 sEemRvlYVAlTRAkekLiLvgsvkdekkevkkwskakavsekvlseed 905 
                  + ++++lY A+TR +++L+L     d+++ +kk+ + ++++e+++s+++
  MMETSP1174-20130828|5815_1 1647 EVDLKMLYTAITRCRNRLVLCE--TDQSSVWKKFIRRFKETEQQVSTHE 1693
                  447999************9986..5999999***999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.36u 0.20s 00:00:01.56 Elapsed: 00:00:00.74
# Mc/sec: 3306.86
//
Query:       MMETSP1174-20130828|5818_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1174-20130828|5820_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|5819_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   34.8   0.0    1.8e-09   34.5   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.4e-13   1.8e-09     269     355 ..     126     220 ..      92     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.4e-13
   TIGR01982 269 lkqvlrdgfFHaDlHpGNilvakd........gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairav 355
                  +qv++ g+F +D+HpGNilv ++         ++ ++D+G   +l++ee++ +a+++l++ ++d ++ +   ++   ++++ d  e+ +  +++
  MMETSP1174-20130828|5819_1 126 GHQVFNLGLFNSDPHPGNILVVEKeedgkkssRRLGLIDYGQCKQLTPEEQYKIARLVLSVANNDPDEEIARAFRDLNIRTKNDSTEFLAKFGKL 220
                 379*****************988778999988899******************************876555556656677777887877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1381.17
//
Query:       MMETSP1174-20130828|5816_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.27
# Mc/sec: 2160.71
//
Query:       MMETSP1174-20130828|5821_1  [L=1129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.9   8.3      0.013   12.7   3.3    1.8  2  TIGR04092 LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD
      0.049   11.8   0.7         16    3.7   0.0    3.8  3  TIGR02230 ATPase_gene1: putative F0F1-ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR04092  LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.3   6.1e-06     0.013     194     280 ..     354     443 ..     348     457 .. 0.83
   2 ?   -2.0   0.1      0.18   3.7e+02     228     257 ..     461     490 ..     446     490 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.1e-06
   TIGR04092 194 lekklleelkkellekedelfsklklkkkkkikkeakklpe....kidweelekkaekegkkktsnNefgiknkfYkkrikkklkklknsq 280
                   k+++e+l + ++++ ++l+++++ k +k+ k+ +k +       ++ +el +  e+ g++k ++ + g++ +++k+r+kk+ k++k+++
  MMETSP1174-20130828|5821_1 354 NMKEYFEKLARGYVKSDKHLTREIN-KHQKRKKNISKDMVVdvfiGYNNSELISACEQLGEEKFKKYRIGMEVRYWKTRLKKQGKQYKDVS 443
                 5788999999*************99.555555544444443466799*****************************************986 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.18
   TIGR04092 228 eakklpekidweelekkaekegkkktsnNe 257
                 ++k++++ + +++le+++e+ ++k+t++Ne
  MMETSP1174-20130828|5821_1 461 HRKRTESLQRIKQLEREIEEHHEKNTDDNE 490
                 455666677899999999*******99996 PP

>> TIGR02230  ATPase_gene1: putative F0F1-ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0076        16      10      47 ..     367     404 ..     359     409 .. 0.86
   2 ?    2.6   0.0     0.017        34      35      63 ..     673     701 ..     657     720 .. 0.78
   3 ?   -0.1   0.0      0.12   2.5e+02      48      75 ..     859     886 ..     849     892 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0076
   TIGR02230  10 skkdkplekrvgakeerklkarkdadrsvwlglgmlgl 47 
                  k+dk l ++++++++rk +  kd    v++g+    l
  MMETSP1174-20130828|5821_1 367 VKSDKHLTREINKHQKRKKNISKDMVVDVFIGYNNSEL 404
                 589**********************9999999876655 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.017
   TIGR02230  35 drsvwlglgmlgligwsvaiptllgvalg 63 
                 + +vw     +g +g  va+ t + + + 
  MMETSP1174-20130828|5821_1 673 KSTVWNLCISMGAVGVVVAVNTAITMMIT 701
                 5689999999************9987654 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.12
   TIGR02230  48 igwsvaiptllgvalgiwldkhypssfs 75 
                 i +s  ip l+ +a+  ++   +  +f 
  MMETSP1174-20130828|5821_1 859 IMYSTGIPILIPIAVAQFFFTYWLDKFL 886
                 6789999****99998666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.17s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3547.99
//
Query:       MMETSP1174-20130828|5826_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.9   0.2      0.028   11.6   0.1    1.1  1  TIGR03109 exosortase_1: exosortase A


Domain annotation for each model (and alignments):
>> TIGR03109  exosortase_1: exosortase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.7e-06     0.028     180     229 ..      28      76 ..      20      91 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.7e-06
   TIGR03109 180 lryLiaslalgalyayllyksikrrllfilvsiivpilaNglRvygiili 229
                  r ++++l +ga+++y +  ++   + +++v+i++ i+a  lR y +  i
  MMETSP1174-20130828|5826_1  28 SRAFLIALSIGAIIGYAVSPELDIGA-CFAVAIVFTIVAFALRLYCLKRI 76 
                 57789999*********999998765.7789**************98555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 700.56
//
Query:       MMETSP1174-20130828|5823_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2007.62
//
Query:       MMETSP1174-20130828|5825_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1336.92
//
Query:       MMETSP1174-20130828|5824_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1000.07
//
Query:       MMETSP1174-20130828|5827_1  [L=1254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 2758.57
//
Query:       MMETSP1174-20130828|5828_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1196.33
//
Query:       MMETSP1174-20130828|5831_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1195.44
//
Query:       MMETSP1174-20130828|5832_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|5834_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1376.46
//
Query:       MMETSP1174-20130828|5829_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 787.05
//
Query:       MMETSP1174-20130828|5830_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-05   18.5   0.0    0.00046   16.3   0.0    1.8  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
     0.0013   16.1   0.0     0.0024   15.2   0.0    1.4  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.2e-07   0.00046     175     268 ..      43     123 ..      16     128 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.2e-07
   TIGR04075 175 krdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vkagaalc.vpGnheekllrk 268
                   +   P  ++Gd+hG + +l el++  G                  + + +flGd+vdrG  s++   lv  + v+  a +c ++Gnhe++ + +
  MMETSP1174-20130828|5830_1  43 MAHVPAPVTVVGDIHGQFYDLLELFRIAGD-----C----------PNTNFLFLGDYVDRGYYSVECATLVLLLkVRYPARVClLRGNHESRQITQ 123
                 234457889999999999999888765553.....2..........234689**************99999765377777777358****986655 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06    0.0024       5     128 ..      52     176 ..      49     192 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryvkslg..davrlvl..gnhdlhllavalgikkvkpkdrldalleapdadellnwlrrqpllvvdeekklvlahagispdwd 128
                 ++gd+hg + +l  l++     p+ + l+l gd v rg  s+e+  +v  l     +r+ l  gnh+   ++ + g      +   ++ +    + e  ++l     +   +++k+   hag+sp  +
  MMETSP1174-20130828|5830_1  52 VVGDIHGQFYDLLELFRIAGDCPNTNFLFL-GDYVDRGYYSVECATLVLLLKvrYPARVCLlrGNHESRQITQVYGFYDECMRKYGSPAVW-TMFVEAFDYLPLAASVD-GNNQKIFCPHAGLSPSLE 176
                 79*****99999888876666777777776.*************998876642234454433399*9999999999877777666665544.34677777776555444.445667778888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1278.64
//
Query:       MMETSP1174-20130828|5833_1  [L=1469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-86  286.3   0.0    1.3e-85  285.9   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.7e-82  273.8   0.0    9.1e-82  273.1   0.0    1.2  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.3e-11   40.0   0.0    4.2e-11   39.1   0.0    1.3  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      1e-10   38.3   0.0      2e-06   24.2   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.7e-07   27.5   0.0    4.4e-07   26.8   0.0    1.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    9.7e-06   22.0   0.0    1.5e-05   21.4   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00014   18.1   0.0    0.00021   17.5   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.9   0.0   2.2e-88   1.3e-85       4     398 ..     102     508 ..      99     529 .. 0.90

  Alignments for each domain:
  == domain 1    score: 285.9 bits;  conditional E-value: 2.2e-88
   TIGR01389   4 vLkevFGyeeFRggqeeiiee.vldgrdvlavlPtGGGkslCYqvPaLllk.gltvvisPLisLmkDqvdqLraaGveaa.alnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefvssfdRenlafsvvkke.nkkkqlleylkkereksG.....iiYassRkkveelaeaLeskgieal..aYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDla..llkrlieeseasedrkqieskkLdellaya.etkkCrrklllkyFgeeeveeCgnCdnCldpaka 398
                  L+ +FG+  F +gq e i++ v+++rdvl +  t  GkslC+q P+L+++   t+vi PL+ +m Dqvd+ +a   +a   l  +ls + +++ l  +++g++ l++ +Pe++ +++f+  +++ +ia +avDeahC++ W h  Rp+Y r  e++ +f  +pvialtata+++vre i ++L l+++  +  s+ R nl + v +   + +kq+ + l  +++k G     iiY  ++k  e+l  +L++   +a   + h+G+  + R++ + kF+     +vvat+a  mG+ k+dvR v+h+     +e+y qe+GRaGRDG+ a a++l + + ++  l  + ++  ++  +  +  +k L+++  ya +t++Cr++ ll++Fge + + Cg Cd+C++ +++
  MMETSP1174-20130828|5833_1 102 ALSAIFGHGAFLPGQWEAIHAiVIERRDVLMLTSTNSGKSLCFQFPSLFRPkTYTIVIVPLLVIMLDQVDKTNALNPDARpPLAIGLSGESTEQELGMATSGRVPLVFTTPEQFTKHHFR--FNQARIAAIAVDEAHCIAIWAHTLRPSYLRFLEIRRNFAGVPVIALTATATEQVREVICRTLGLQSPLVVSGSLFRSNLKYCVLEMAsDINKQVCDILLAHTNKDGkigpaIIYVITKKAAEDLRLHLSTSFPSAFpsMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVVHVGAVMTIEEYLQESGRAGRDGNLAYAVFLTNDSAFStfLSPFYMDALTSLPQLFDLAMKSLESIRCYAsQTNTCRQNFLLRHFGEVRSDGCGVCDVCISSSTN 508
                 5899***********998887257899**********************96267********************99999736999**********************************7..78999*****************************************************************************988651678999999999999877666779*****************99888853378********************************************************************999887665543225566788888889999**********99973689**************************98764 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   0.0   1.6e-84   9.1e-82       3     401 ..     103     503 ..     101     524 .. 0.86

  Alignments for each domain:
  == domain 1    score: 273.1 bits;  conditional E-value: 1.6e-84
   TIGR00614   3 lkkvfglesfrpvqlevinavlegr.dalvvmatGgGksLCyqlpavvsdg.ltlvisPLisLmeDqvlqLkasdisatl.LnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekkskiledllkfiv..kefkgksG..iiYClsrkkveqvaaeLqkkglaa..aaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdek...kreyklkllekvekye.nsskCRRlillsyfeekqlkkasskkgteksCdnCk 401
                 l   fg+  f p+q+e+i+a++ +r d+l++ +t  GksLC+q+p+++ ++  t+vi PL  +m Dqv++ +a++ +a   L+   s e +++ l    +g++ l++ tPe+ +k++    ++ ++ +++ iavDeahCi+ W h  R++y ++  +++++  vpviaLtata+++vre i ++L l++p v++ s  R nlky v e  s+i +++   +   ++ +gk G  iiY  ++k +e++  +L     +a     h g+  sar+++  kf++  +++vvat a  mG+ kpdvR v+h ++   ie+Y qesGRaGRDg  + +v + + + +++  +   +   ++     +   k le +  y+ ++++CR+  ll +f+e  ++ + +      +Cd C 
  MMETSP1174-20130828|5833_1 103 LSAIFGHGAFLPGQWEAIHAIVIERrDVLMLTSTNSGKSLCFQFPSLFRPKtYTIVIVPLLVIMLDQVDKTNALNPDARPpLAIGLSGESTEQELGMATSGRVPLVFTTPEQFTKHHF---RF-NQARIAAIAVDEAHCIAIWAHTLRPSYLRFLEIRRNFAGVPVIALTATATEQVREVICRTLGLQSPLVVSGSLFRSNLKYCVLEMASDINKQVCDILLahTNKDGKIGpaIIYVITKKAAEDLRLHLSTSFPSAfpSMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVVHVGAVMTIEEYLQESGRAGRDGNLAYAVFLTNDSAFSTFLSPFYMDALTSlpqLFDLAMKSLESIRCYAsQTNTCRQNFLLRHFGE--VRSDGC-----GVCDVCI 503
                 7789****************988877**********************98736**********************9986425555555545555555699*************99933...33.6779****************************************************************************************999998443333444344*****************999877733579**********************************************************************99988887777666666666655332334566778888877625779************..555655.....3455554 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   7.2e-14   4.2e-11      25     346 ..     124     425 ..     111     441 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 7.2e-14
   TIGR04121  25 aeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRG.dlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkart...tlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                 + e+++ l+ ++T +GK l   +psl + +          ++ i PL  +  d     +a   + + ++ ++l +G+++++e    ++ +  ++ tTpE++    ++++ +   +++ a+ vDE H ++          L +  +rr   ++ v++l+AT    e+++ev++++   ++  +v+++  ++     +l+        a  +  + ++ +l++ +k      +++++ t++ aE l  +L +  +   +  ++ Hg +  ++R+++  ++ ag+  +vv+T +L +Gv   dv lv++vG+   +   lQ  GR++  
  MMETSP1174-20130828|5833_1 124 VIERRDVLMLTSTNSGKSLCFQFPSLFRPK--------TYTIVIVPLLVIMLDQVDKTNALNPDARPPLAIGL-SGESTEQELGMATSGRVPLVFTTPEQF----TKHHFRFNQARIAAIAVDEAHCIAIWAHTlRPSYLRFLEIRRNFAGVPVIALTATAT--EQVREVICRTLGLQSPLVVSGSLFRSNLKYCVLEM-------ASDINKQVCDILLAHTNKDGKigpAIIYVITKKAAEDLRLHLSTSFPS--AFPSMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVVHVGAVMTIEEYLQESGRAGRD 425
                 45789999******************9877........67899*****************************8.677777777777777888899****96....5777777778999********9976443313456888999**************975..78999999999989999999988888888888877.......5566777777777777665432338*********************99..5668899***********************************************************9854 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.7e-05    0.0098      50     220 ..     126     288 ..     104     317 .. 0.80
   2 !   24.2   0.0   3.4e-09     2e-06     317     392 ..     369     444 ..     331     454 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
   TIGR03817  50 aGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkelee..rdvraatydGdtpaeerewi.rekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleve 220
                 + ++v + t+t sGksl++++P l      p++ ++ + P   +  dq+ + ++l+   r   a  + G++ ++e  ++   +  +v+t P+ +     ++h r+ +   +++ + vde+h    ++   +     r++ + +++   Pv+ l+++++ +  +   r +Gl+  
  MMETSP1174-20130828|5833_1 126 ERRDVLMLTSTNSGKSLCFQFPSLF----RPKTYTIVIVPLLVIMLDQVDKTNALNPdaRPPLAIGLSGESTEQELGMAtSGRVPLVFTTPEQF----TKHHFRFNQ--ARIAAIAVDEAHCI-AIWAHTLRPSYLRFLEIRRNFAGVPVIALTATATEQVREVICRTLGLQSP 288
                 5678999***************986....599999********************9933444556678888777766551457789*****865....567888877..5789999****986.68888888888889999999999999988877777777777777777655 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3.4e-09
   TIGR03817 317 drreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPldtyl 392
                  r+++  ++ +G+   v+atnal +Gv    +  vv  G   t+  + q +GraGr+g+ a +v++++d  + t+l
  MMETSP1174-20130828|5833_1 369 ARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVVHVGAVMTIEEYLQESGRAGRDGNLAYAVFLTNDSAFSTFL 444
                 567777788899999*********************************************************9998 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.6e-10   4.4e-07     465     565 ..     338     437 ..     325     463 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.6e-10
   TIGR00643 465 elkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaep 565
                   kaae+l  +l+++fp++   ++hg +    ++++l +F ++++di+vaT+ + +Gv  P++ ++v      + + +  Q  GR gR  + +y++ ++++
  MMETSP1174-20130828|5833_1 338 TKKAAEDLRLHLSTSFPSAFPSMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVV-HVGAVMTIEEYLQESGRAGRDGNLAYAVFLTND 437
                 5699**********************************************************99755.5556799**************999999988854 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.5e-08   1.5e-05     672     769 ..     343     439 ..     310     470 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.5e-08
   TIGR00580 672 eklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvpsqk 769
                 e+l+ +l++  P+a   ++Hg +  +  ++++ +F+ ++ d+ v+T  +  G++ p++  ++++    + + +  Q  GR GR  + aya +l++++ 
  MMETSP1174-20130828|5833_1 343 EDLRLHLSTSFPSAFPSMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVR-LVVHVGAVMTIEEYLQESGRAGRDGNLAYAVFLTNDSA 439
                 56667788889999999****************************************96.8999999**************************99876 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.5e-07   0.00021     425     541 ..     311     424 ..     304     438 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.5e-07
   TIGR00631 425 tegqvddlleeirervaknervlvttltkkmaedltdylkelgikv..kylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                  ++qv d+l    ++  k   +++ ++tkk aedl  +l+     +    +h  +    r++i+ ++ +g++d++v  n L  G+  P+v lv  + a     +   +  +q  Gra r
  MMETSP1174-20130828|5833_1 311 INKQVCDILLAHTNKDGKIGPAIIYVITKKAAEDLRLHLSTSFPSAfpSMIHGGVGLSARQRILGKFIAGTCDIVVATNALSMGVHKPDVRLVVHVGA-----VMTIEEYLQESGRAGR 424
                 6789999988888888888999****************998754443389*******************************************86544.....4444455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.05u 0.18s 00:00:01.23 Elapsed: 00:00:00.75
# Mc/sec: 2585.23
//
Query:       MMETSP1174-20130828|5837_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1499.88
//
Query:       MMETSP1174-20130828|5835_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-08   31.4   0.2      6e-08   30.6   0.0    1.5  2  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.04   1.7e+02      59      98 ..      56      99 ..      48     107 .. 0.71
   2 !   30.6   0.0   1.5e-11     6e-08      11     139 ..      83     209 ..      72     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.04
   TIGR01632 59 vyeDksftfivktppvs....vllkkaagvekgskkpkkekvgk 98
                vy  ++f+ ++  pp      +++ +a+g e g+ ++   k+g 
  MMETSP1174-20130828|5835_1 56 VYPSSTFQATMGPPPSNeppkYVILRAVGGEVGAPSALAPKIGP 99
                78889999999887753222278888888888877776666665 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 1.5e-11
   TIGR01632  11 veagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaag..vekgskkpkkekvgkitlkqvreiAklKlsD.lnaleleaavkiiaGtAksmGieve 139
                 v +   +Ps+ + p +g  g++  +   +  ++t d  kg +v v +t+ + ++   +   p++s ll k ++  v   +k  + ++ g+itl++v ++A+ K++D   a+el++ vk i GtA+s+G +v+
  MMETSP1174-20130828|5835_1  83 VGGEVGAPSA-LAPKIGPLGLSPKKVGDDIQKATMD-WKGQNVTVKLTIINRQATAEV--VPSASALLVKCLRepVRDRKKVKNIKHDGNITLDEVFDVAR-KMRDrSMARELSGTVKEILGTARSLGCTVN 209
                 4444556766.899999999999999**********.99**********997765544..4889999999876336666777777899************7.7888577899****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|5838_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.52
# Mc/sec: 1888.46
//
Query:       MMETSP1174-20130828|5839_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 813.22
//
Query:       MMETSP1174-20130828|5841_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1174-20130828|5840_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 936.30
//
Query:       MMETSP1174-20130828|5836_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1284.69
//
Query:       MMETSP1174-20130828|5842_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.4   0.0      0.058   10.4   0.0    1.4  1  TIGR02120 GspF: general secretion pathway protein F


Domain annotation for each model (and alignments):
>> TIGR02120  GspF: general secretion pathway protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.4e-05     0.058      57     111 ..     229     283 ..     191     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.4e-05
   TIGR02120  57 rrrlskaelallTrqLatLlgaglpleealaalleQaekerlkevlaairsevle 111
                  ++++++++a+lT+ L  L  agl+l+eal+++l+  + +  ++v+ +i ++  +
  MMETSP1174-20130828|5842_1 229 IGGIKEENQAILTHYLEGLDFAGLSLDEALRTMLREFRLPGEAQVIDRILEKFSQ 283
                 4678999********************************9999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1779.21
//
Query:       MMETSP1174-20130828|5844_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    5.7  14.5        3.9    5.2  10.0    1.3  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  10.0   0.00095       3.9     106     150 ..      57     100 ..      47     113 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00095
   TIGR04032 106 kvtgeanlvavvavaavlavvvvaaVAvatvalaavavnpavdst 150
                 ++++ +++ ++++ ++v+a+v++a+VA   v++aa av +a+ +t
  MMETSP1174-20130828|5844_1  57 QQQPTTAATVATVSVVVVAAVGAATVATVSVVVAA-AVGAAIVVT 100
                 33333333333333344444444444443333333.555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       439  (0.107021); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|5846_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|5845_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       398  (0.0970258); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 1312.13
//
Query:       MMETSP1174-20130828|5851_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|5848_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|5850_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1304.54
//
Query:       MMETSP1174-20130828|5853_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 885.10
//
Query:       MMETSP1174-20130828|5855_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-08   29.4   0.0    1.2e-07   29.0   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0058   13.3   0.0     0.0074   13.0   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.025   11.4   0.0    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   8.6e-11   1.2e-07      16     122 ..     171     276 ..     158     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 8.6e-11
   TIGR00225  16 etaikeilaslndpytrylskeeakelsettsgeleGiGiqvqmedd.eivivs.plegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleierag 122
                 ++a+++  +sl d y+r l+  +++++s+    +l G G+ +  +d+ ++ + s p+ gs  +k g+  gD I++++g ++a m   ++++l+  +++  + +ei+ ++
  MMETSP1174-20130828|5855_1 171 FKAAQKLTSSLGDKYSRMLDVGTFDRMSK---YDLIGAGVLLAPNDEkKLQVASpPMPGSSGAKNGLAKGDLILSINGVPAADMTAFEVIDLVMKNNDPTITMEIKEGN 276
                 678899999**********9888887775...79********98887689998846*************************************999999******9875 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.4e-06    0.0074     197     260 ..     211     276 ..     168     280 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.4e-06
   TIGR00054 197 elgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdl..vklvkenpeksleikveRng 260
                 +  +k   v s  ++ s  +k Gl +GD il+i+g+++ + + +  + lv +n++ ++ ++++  +
  MMETSP1174-20130828|5855_1 211 PNDEKKLQVASPPMPGSSGAKNGLAKGDLILSINGVPAADMTAFevIDLVMKNNDPTITMEIKEGN 276
                 555555556666677788889****************99888652267888889999888887654 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05     0.025     267     298 ..     224     255 ..     213     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.8e-05
   TIGR02037 267 lkgspAekaGlkaGDvilkvngkkiksaadlr 298
                 ++gs+ +k Gl +GD+il++ng +  ++++++
  MMETSP1174-20130828|5855_1 224 MPGSSGAKNGLAKGDLILSINGVPAADMTAFE 255
                 689999****************9988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1090.85
//
Query:       MMETSP1174-20130828|5858_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1241.52
//
Query:       MMETSP1174-20130828|5861_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1326.84
//
Query:       MMETSP1174-20130828|5863_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 994.32
//
Query:       MMETSP1174-20130828|5868_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|5870_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|5871_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 174.57
//
Query:       MMETSP1174-20130828|5873_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 206.78
//
Query:       MMETSP1174-20130828|5874_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 632.64
//
Query:       MMETSP1174-20130828|5875_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-07   26.1   0.1      5e-07   25.8   0.0    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.6e-06   23.9   1.6    0.00044   17.7   0.3    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0071   12.8   0.7      0.015   11.8   0.4    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.021   13.2   0.4       0.33    9.4   0.1    2.6  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.8e-10     5e-07      66     171 ..       3     114 ..       1     158 [. 0.60

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 4.8e-10
   TIGR02917  66 yleqGdaaaAekeLrkAlslgyske.......qvlplLarayllqgkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlala 171
                 y ++G++++A ++++ Al++ +++         +  lLa  +    +f+++  e+  + ++ ++  a+++++rg+A   + +++e+++++ +Ala +p+  e++++l q + +
  MMETSP1174-20130828|5875_1   3 YRALGEIENAFADYHSALEADPESDvtrgrlsTIHYLLATDLFNHTEFEQAEIEA-TVALDYKPHVAQYHVVRGKARYYQNKFDESEEDYREALARDPSLDEVRAQLGQFSQS 114
                 6666677777777777776666665111111123344444445555555554444.233456666677777777777777777777777777777777666666666665544 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0021       2.2      74      98 ..       2      26 ..       1      30 [. 0.89
   2 !   17.7   0.3   4.3e-07   0.00044      30     106 ..      33     109 ..      26     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0021
   TIGR02521 74 yyqqlgelekAeesfrkAltlkpnn 98
                 y  lge e+A + ++ Al+ +p++
  MMETSP1174-20130828|5875_1  2 CYRALGEIENAFADYHSALEADPES 26
                58999**************999986 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 4.3e-07
   TIGR02521  30 aakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYG 106
                  + i+  La+  +++ ++e+A  +   Al ++p+ a+ + +++ +  ++ + ++ ee +r+Al+ +p   +v+   G
  MMETSP1174-20130828|5875_1  33 LSTIHYLLATDLFNHTEFEQAEIEATVALDYKPHVAQYHVVRGKARYYQNKFDESEEDYREALARDPSLDEVRAQLG 109
                 56778889999******************************9888888889999**********9998777665555 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.4   1.4e-05     0.015     379     469 ..       7     104 ..       2     111 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   TIGR00990 379 gdsdkaeedfdkalkkdsed.......sdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdv 469
                 g+ ++a  d++ al+ d+e        s i+y  a   f + ef++a+ +   + d  p     ++  +  +y ++++++se  +r+a  + p   +v
  MMETSP1174-20130828|5875_1   7 GEIENAFADYHSALEADPESdvtrgrlSTIHYLLATDLFNHTEFEQAEIEATVALDYKPHVAQYHVVRGKARYYQNKFDESEEDYREALARDPSLDEV 104
                 55666777778888888775333334456777777777888888888888888888888888888888888888888888888888888777777666 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   1.6e+02      49      73 ..       3      27 ..       1      42 [. 0.86
   2 ?    9.4   0.1   0.00032      0.33      41      87 ..      68     116 ..      38     134 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.16
   TIGR02795 49 lyakkkykdAakaflevvkkypkse 73
                + a +++++A + ++++++++p+s+
  MMETSP1174-20130828|5875_1  3 YRALGEIENAFADYHSALEADPESD 27
                6788999999999*99999999987 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00032
   TIGR02795  41 AqY..wlGealyakkkykdAakaflevvkkypksekapdallklgeslq 87 
                 AqY   +G+a y ++k++++++ ++e+++++p+ + +  +l + ++s +
  MMETSP1174-20130828|5875_1  68 AQYhvVRGKARYYQNKFDESEEDYREALARDPSLDEVRAQLGQFSQSTS 116
                 5552257************************998887777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|5872_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-05   19.7   0.0    0.00013   18.7   0.0    1.4  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    8.4e-05   19.0   0.1    0.00024   17.5   0.0    1.6  2  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    0.00017   18.0   0.1     0.0038   13.6   0.0    2.2  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
     0.0009   15.9   0.4     0.0009   15.9   0.3    1.4  2  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
     0.0017   14.6   0.0     0.0038   13.4   0.0    1.5  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
     0.0042   13.6   0.3     0.0083   12.6   0.2    1.4  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
     0.0062   12.9   0.1      0.009   12.4   0.1    1.1  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit


Domain annotation for each model (and alignments):
>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07   0.00013     365     427 ..     384     446 ..     375     498 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.2e-07
   TIGR02339 365 kavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGr 427
                    t++l   t   v e+eRal  +l+ ++ +l+++ v++G+G +e+ +   lr  a+  +Gr
  MMETSP1174-20130828|5872_1 384 SVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTRGR 446
                 44577788888899********************************************99998 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     4e-07   0.00024     359     423 ..     380     444 ..     371     452 .. 0.91
   2 ?   -2.1   0.0      0.35   2.1e+02     485     518 ..     553     586 ..     550     590 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4e-07
   TIGR02346 359 eedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklk 423
                  ++s+++t+vL   t +++ + era+   +  +  +++ + +lpGag te+ ++ +l+  a+ ++
  MMETSP1174-20130828|5872_1 380 SSSSSVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTR 444
                 45689***************************************************999887665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.35
   TIGR02346 485 keekiyDllaakkfaiklateaavtvLkvDqiim 518
                 + + iyD +++k+  ++ a   +  +L+ D +++
  MMETSP1174-20130828|5872_1 553 TSHVIYDDWTSKRAVLERAVAVVGILLSTDEVLF 586
                 6678***************999999999999875 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.4e-06    0.0038     372     434 ..     385     447 ..     376     485 .. 0.89
   2 ?    1.9   0.0     0.023        13     491     524 ..     553     586 ..     548     593 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.4e-06
   TIGR02347 372 svtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGka 434
                   t+++ +p+  t++  + a+   l  ++ a++ kcv++Gag  e+ ++++l+ +++  +G+ 
  MMETSP1174-20130828|5872_1 385 VATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTRGRL 447
                 468999999********************************************9999999985 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.023
   TIGR02347 491 elkgiwdnysvkkqllssatviasqlllvdevlr 524
                 + + i+d+ + k+ +l+ a ++   ll  devl 
  MMETSP1174-20130828|5872_1 553 TSHVIYDDWTSKRAVLERAVAVVGILLSTDEVLF 586
                 5678***************************985 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.3   7.8e+02     275     337 ..     266     328 ..     249     337 .. 0.76
   2 !   15.9   0.3   1.5e-06    0.0009     364     424 ..     381     441 ..     377     475 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.3
   TIGR02340 275 lkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetle 337
                   + a++vl t+ + d  +     ++v  +  +  + +  i + + at++  + dl    t +
  MMETSP1174-20130828|5872_1 266 ETCKADLVLVTGSMSDRLVTACTASNVGVLPHCPGHMITAIGRLSSATVIGDILDLTDRHTGS 328
                 456688899999998888888888888888899999999999999999998888887666555 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.5e-06
   TIGR02340 364 kkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelat 424
                 +++++a+++l  +   ++ e er+l  +l  ++ +l+sk v++G+G+ ea +   l   a+
  MMETSP1174-20130828|5872_1 381 SSSSVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQ 441
                 55778999******************************************99999887776 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.5e-06    0.0038     362     427 ..     381     446 ..     376     503 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6.5e-06
   TIGR02345 362 ekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgk 427
                  +++ +t++l  ++   ++eaer+l  ++  +  al++k +++G G +e ++ + lr  ++ + g+
  MMETSP1174-20130828|5872_1 381 SSSSVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTRGR 446
                 567899***************************************************999877765 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   1.4e-05    0.0083     360     424 ..     384     448 ..     375     500 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
   TIGR02341 360 eactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkka 424
                    t+vl   t  ++ eaer+l  +l  +    +   +  g+g++e ++  a+   aq + g+ +
  MMETSP1174-20130828|5872_1 384 SVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTRGRLS 448
                 5789*************************99999888889******************9998743 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.5e-05     0.009     362     424 ..     384     446 ..     376     454 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   TIGR02342 362 ktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGv 424
                    +v++       ++eaer+l  +l  i   ++ +++++G G+ e  i  +l+  a+  +G 
  MMETSP1174-20130828|5872_1 384 SVATVVLCSPTIATVHEAERALWSSLHRINGALQSKCVLPGAGVTEAVIIAALRASAQLTRGR 446
                 334455555555679**************************************9999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2097.93
//
Query:       MMETSP1174-20130828|5877_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|5878_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 172.95
//
Query:       MMETSP1174-20130828|5885_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|5882_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 919.67
//
Query:       MMETSP1174-20130828|5889_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053    9.8   1.9      0.063    9.6   1.3    1.2  1  TIGR03832 Tyr_2_3_mutase: tyrosine 2,3-aminomutase


Domain annotation for each model (and alignments):
>> TIGR03832  Tyr_2_3_mutase: tyrosine 2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.3   1.5e-05     0.063     209     281 ..      18      92 ..       5      97 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.5e-05
   TIGR03832 209 eqvrqaeivaalviealrgsadpflaeGhdiarpheGqidsaanmrallrgsa..ltvehaelrrelqerkeeek 281
                 ++v++a + aal     ++ +     +  +  +  +G+ + a ++r ll++s+  + +e+a l+re+q+ +  ++
  MMETSP1174-20130828|5889_1  18 AKVERAGLEAALQRHQTETMTLHTKLQQVEAQQHDTGEARQAEDLRILLQESEntRASEYARLSREIQTAEMTSE 92 
                 55556666666554444443333333333444455799************99722569**********9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1174-20130828|5887_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 605.60
//
Query:       MMETSP1174-20130828|5891_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 226.86
//
Query:       MMETSP1174-20130828|5890_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 202.70
//
Query:       MMETSP1174-20130828|5893_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.3   0.0       0.02   12.6   0.0    1.3  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-06      0.02      74     143 ..     132     205 ..     119     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.9e-06
   TIGR03927  74 qeelkdqLfs.enatesntvkktkkqLFsseyeqtsssseste...eeetektssilllvliaglillliagiy 143
                 + +l +++fs +  +++ ++  t+++ F++ y++++ +s+ t+   +  +++ s +++ v++++l+l+++++ +
  MMETSP1174-20130828|5893_1 132 YTDLMQDSFStTLVNNGVSLTGTIESYFVTRYPTPIPTSDPTReylDVVSATASTAIVAVFVVLLLLFFVVMGV 205
                 5678999***999***********************99998888977788888888888888888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 2135.82
//
Query:       MMETSP1174-20130828|5896_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|5895_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1174-20130828|5901_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|5905_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|5908_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 138.94
//
Query:       MMETSP1174-20130828|5902_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    9.3   1.7        0.1    8.8   1.2    1.1  1  TIGR01480 copper_res_A: copper-resistance protein, CopA family


Domain annotation for each model (and alignments):
>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2   2.5e-05       0.1     324     428 ..      20     123 ..      18     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 2.5e-05
   TIGR01480 324 PseddaftifaqdsdrtGyarGtlavreGlkaavPaldkrplltmkdmgmgnmdhggsdsskasaknmaglameasaksaapadhsmasdaalkvdstkarpase 428
                 P +++a+t   ++++rt   rGt   r G ++ +  l++ +  + kd   g+m+  +  + +   ++ +  ++++++ s+++ +++m+++     + ++a+++ +
  MMETSP1174-20130828|5902_1  20 PGQKKAWTP-ENSAQRTNGKRGTKEGRGGTQSYIEHLNEEKNRKGKDNISGKMASDAYMKKQERKEKRRAKEQQMREDSKPTLKKDMKKEEKNVSQVAAAEEPAH 123
                 556666664.567899999***********************************886554555566677788999999999999998877665555555443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1248.82
//
Query:       MMETSP1174-20130828|5909_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-07   27.2   0.0    6.2e-07   26.6   0.0    1.2  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.5e-10   6.2e-07       9     211 ..      32     223 ..      31     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.5e-10
   TIGR01293   9 sglrvsclglgtwvvfgsqisdeqaedllklayesginlfdiaevyaagkaetelgk.ilkkkg.wrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlan...........radpsspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwspla 211
                 sg ++  +glgtw         + a + ++ a+ +g n +d a +y     ++e+g  ++  +g   rss+ +t+k++        r      + ++l+ +l  lq ey+d+ l++           ++d s+ ++e+ r++  ++++g     g s + +ve+ +  s ar    i p v+q e h       ++ l ++  + g+ + ++spl 
  MMETSP1174-20130828|5909_1  32 SGDKMPLVGLGTWES------KKVA-SAVRCAITTGCNHIDCASAYR---NQKEIGTeLVSLQGkHPRSSLWLTSKLWND----RRRP---ADVRDALEQTLRELQTEYLDLYLIHwpvvwargsvmKPDASASLQETWRTLEALVDEGKVRNIGVSNYNEVELRDLLSYAR----IKPAVNQVELHPR---LPQVSLVNFCAQNGIAVTAYSPLG 223
                 677788899999973......3333.45789**************99...5667775144555624599999*9998544....3333...356688889999999999998776544444445555899***************************************999....8999999999953...345677777788888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|5913_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1174-20130828|5914_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|5916_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 505.96
//
Query:       MMETSP1174-20130828|5915_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1362.79
//
Query:       MMETSP1174-20130828|5917_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1174-20130828|5919_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|5920_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1132.91
//
Query:       MMETSP1174-20130828|5924_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|5925_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|5921_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1174-20130828|5927_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|5933_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1174-20130828|5934_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|5940_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|5937_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 991.92
//
Query:       MMETSP1174-20130828|5935_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-91  304.6   0.0    3.1e-91  303.8   0.0    1.3  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    8.9e-30  101.4   0.0    8.9e-30  101.4   0.0    2.9  3  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    1.3e-21   75.1   0.0    1.2e-20   71.9   0.0    2.0  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.8   0.0   2.3e-94   3.1e-91       5     295 .]     159     479 ..     154     479 .. 0.92

  Alignments for each domain:
  == domain 1    score: 303.8 bits;  conditional E-value: 2.3e-94
   TIGR00501   5 aeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPanisinevaahftpkagdetvlkdedvvkldlGahvdGyiadtaitvdlddqykellkaakdaletaikeiradvevgeiGkvieevies.........ygvkPisnLtGhslaryrlhagksipnvkerdttkleeGevlaiepfatdGvGlvtdggeveiyk..llae.rpvrlksarklLkkieenyktLPfakrylekle............deklllalnkLvregviqdypvLkeksgslvaqfehtilveedgaevvtk 295
                 ++k+ +a +++++vrr a+  i+pG+kl+++ e +e++ rel  e       +fP++ sin++aahftp+ gd tvl+++dv+ +d+G+++dG i+d a t+++d+q++ ll+aa++a++ +i++ ++dv + e+G++i+ev+es         + vk ++nLtGhs+  y++hag+s+p+vk +d+ ++eeG   a+e+f+++G G v +  e+++y   + a+  p+r+++++klL +i++ ++tL f++r+le+              +ek+l al++L   g++q+yp+L +k+gs+vaq+ehtil++   +e+v+k
  MMETSP1174-20130828|5935_1 159 YDKVRHASEVHRQVRRWAQSWIKPGIKLIDMCEAIEQKNRELVQESglqagiGFPTGCSINHIAAHFTPNGGDTTVLQKGDVMSIDFGTQIDGRIIDCAWTLSFDEQFDPLLEAAREATNMGIRTCGIDVPLCEVGEAIQEVMESyevtidgttFPVKCVRNLTGHSIGAYQIHAGQSVPIVKGGDSSRMEEGVFYAVETFGSTGKGHVVEDLECSHYMknFNAPhVPLRMPRSKKLLAHINKTFGTLAFCRRWLEREDggsfaingasgrQEKYLGALKNLCDVGIVQPYPPLCDKPGSYVAQYEHTILLRPTCKEIVSK 479
                 55666778*******************************9998774455566*********************************************************************************************999999999999*************************************************************6225566569****************************963233333333334899*********************************************97 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   2.6       2.4   3.3e+03     363     376 ..       3      13 ..       1      22 [. 0.47
   2 ?   -0.5   1.5     0.062        85     362     377 ..      55      70 ..      42      79 .. 0.63
   3 !  101.4   0.0   6.5e-33   8.9e-30      12     334 ..     152     479 ..     142     482 .. 0.79

  Alignments for each domain:
  == domain 1    score: -5.8 bits;  conditional E-value: 2.4
   TIGR00495 363 kkknkkkakkasaa 376
                 k   kkk+kk ++a
  MMETSP1174-20130828|5935_1   3 K---KKKKKKKGKA 13 
                 3...3333333333 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.062
   TIGR00495 362 kkkknkkkakkasaat 377
                 + kk+kkk+kk ++a+
  MMETSP1174-20130828|5935_1  55 SGKKKKKKKKKKGKAA 70 
                 4455555555555443 PP

  == domain 3    score: 101.4 bits;  conditional E-value: 6.5e-33
   TIGR00495  12 vslsnpevvtkykiageiankvlkkvvekcksgakvvdiCekGdelikeetakvykkkkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviekvaasydcksveGvlshqlkrevid...GekvvlskpsdsqkkevdkvefeenevyavdilvstgeGkakeederttiykkdedktyklklkasrkviseikkrfsalPftlrnledek.............rarlG.lvecvehkllqpyevlydkeGeivaqfkftvlllpnGsirlts 334
                 +   ++   +k + a+e+ ++v +   +  k+g+k++d+Ce     i+++  ++ ++   l+ Gi fPt  s+n +++hf+P  +d++vl++Gdv+ id+G+ idG i   a t      e+        + aa+ a +  +r+        ev e+i+ v +sy++++    +  +  r++     G  ++   +s    k  d   +ee+  yav+   stg+G + e  e +   k  +  +  l++  s+k+  +i+k f++l f  r le e              +  lG l ++ + +++qpy+ l dk+G+ vaq++ t+ll p  ++++++
  MMETSP1174-20130828|5935_1 152 ER-MQEDLYDKVRHASEVHRQVRRWAQSWIKPGIKLIDMCEA----IEQKNRELVQE-SGLQAGIGFPTGCSINHIAAHFTPNGGDTTVLQKGDVMSIDFGTQIDGRIIDCAWTLSFD--EQF----DPLLEAAREATNMGIRTCGIDVPLCEVGEAIQEVMESYEVTIDGTTFPVKCVRNLTGhsiGAYQIHAGQSVPIVKGGDSSRMEEGVFYAVETFGSTGKGHVVEDLECSHYMKNFNAPHVPLRMPRSKKLLAHINKTFGTLAFCRRWLEREDggsfaingasgrqEKYLGaLKNLCDVGIVQPYPPLCDKPGSYVAQYEHTILLRPTCKEIVSK 479
                 33.445567999****************************85....77777666665.99*****************************************************98874..444....457899999*******999999999************9998654444444444333211255666666665557888889999*****************98876666655555667789***************************98862222111111111223554667889999*************************998887765 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   8.7e-24   1.2e-20      10     211 ..     160     368 ..     152     373 .. 0.88
   2 ?    0.6   0.0     0.051        70     224     243 ..     457     476 ..     452     479 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 8.7e-24
   TIGR00500  10 eklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipd...kkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsv.........vkeytGHGiGr.klHeepeilnyakketnvrlkeGmviaiEPmvnekteeiv 211
                 +k+r+a+e+ ++v++ +++ +kpG+++ ++ + +++  ++    s  +   gfp     S+N   +H  p+    +vl++gD+++iD+g ++dG   D a tl     +e+ + llea++ea + +i+++     + e+++ai++ +e++  ++         v+++tGH iG  ++H   +++  +k  +  r+ eG+  a+E + ++++ ++v
  MMETSP1174-20130828|5935_1 160 DKVRHASEVHRQVRRWAQSWIKPGIKLIDMCEAIEQKNRELVQESGLQAGIGFPTG--CSINHIAAHFTPNggdTTVLQKGDVMSIDFGTQIDGRIIDCAWTLS---FDEQFDPLLEAAREATNMGIRTCGIDVPLCEVGEAIQEVMESYEVTIdgttfpvkcVRNLTGHSIGAyQIHAGQSVP-IVKGGDSSRMEEGVFYAVETFGSTGKGHVV 368
                 89****************************999999999999999999999***64..5***********877689**************************97...5789999*******************************999876532222223333**********74899999998.5788999************99888887765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.051
   TIGR00500 224 kklsaqfEhtvvvtengvei 243
                 ++++aq+Eht+++     ei
  MMETSP1174-20130828|5935_1 457 GSYVAQYEHTILLRPTCKEI 476
                 799********986665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.48
# Mc/sec: 1328.14
//
Query:       MMETSP1174-20130828|5944_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-28   95.2   0.0    2.3e-18   64.4   0.0    2.1  2  TIGR00197 yjeF_nterm: YjeF homolog, N-terminus


Domain annotation for each model (and alignments):
>> TIGR00197  yjeF_nterm: YjeF homolog, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   5.7e-22   2.3e-18      48     142 ..       3      94 ..       1      99 [. 0.84
   2 !   29.0   0.0     4e-11   1.6e-07     144     187 ..     116     161 ..     109     177 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 5.7e-22
   TIGR00197  48 vivlcGpGnNGGDGfvvARhlk..gfkveVfllkkeeeielteeaaenlkilkvgvisveegkelvkp.ekadviiDallGtglkgklrepfktivee 142
                 v+++cGpGnNGGDG+v+ARhl   g+++ V+++k++  i l ++ + + ++l    i+v ++  l ++       iDa++G+++kg +r pf +i+  
  MMETSP1174-20130828|5944_1   3 VLIVCGPGNNGGDGLVAARHLHhfGYHPTVVYPKQSRGI-LFTNLVAQCDALG---IPVLAS--LPADlSPFTAAIDAIFGFSFKGTPRPPFGDILAR 94 
                 89********************999999********999.8889999999994...555555..333303456789****************988765 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 4e-11
   TIGR00197 144 nelkafkvsvdvpsGldvetGave..evaveadltvtlhklKpgll 187
                 n  + ++ svdvpsG+dve+G v   ++ + +d++v+l+++K + +
  MMETSP1174-20130828|5944_1 116 NPPPLPVLSVDVPSGWDVEKGDVTpgQTGLRPDVLVSLTAPKLCAA 161
                 5667899***************9744789*************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1162.52
//
Query:       MMETSP1174-20130828|5947_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       568  (0.138469); expected 82.0 (0.02)
Passed bias filter:                      297  (0.0724037); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|5946_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|5950_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|5954_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   14.0   0.0     0.0067   13.7   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.6e-06    0.0067     132     176 ..       2      46 ..       1      58 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-06
   TIGR02415 132 iinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvn 176
                 i+n  s  + ++    +ay++ ++a++gltq+   +   +g+ v 
  MMETSP1174-20130828|5954_1   2 ILNVQSPVSRQAIGGATAYCAGRWALKGLTQALQGDTFRSGVIVQ 46 
                 889999999**********************98888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1174-20130828|5955_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|5959_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   14.4   0.2     0.0088   13.6   0.1    1.4  1  TIGR01280 xseB: exodeoxyribonuclease VII, small subunit
  ------ inclusion threshold ------
      0.011   13.0   0.9      0.013   12.8   0.6    1.1  1  TIGR01597 PYST-B: Plasmodium yoelii subtelomeric family PYST-B


Domain annotation for each model (and alignments):
>> TIGR01280  xseB: exodeoxyribonuclease VII, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   4.3e-06    0.0088      34      62 ..      31      59 ..      25      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-06
   TIGR01280 34 erGiaLakacekkLeeAeqkvekllkeed 62
                erG  L+k++ kkLe+ ++ ++k+ ++++
  MMETSP1174-20130828|5959_1 31 ERGWTLYKHLRKKLEARKKELQKMKDDKK 59
                9*********************9944433 PP

>> TIGR01597  PYST-B: Plasmodium yoelii subtelomeric family PYST-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   6.4e-06     0.013     102     164 ..      24      79 ..      17      87 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.4e-06
   TIGR01597 102 ldlnnvdkktkklidklqkeleelkkeldnksndeleiqpihdkiiikkdennsvseeedlkq 164
                 +++n   ++   l ++l+k+le  kkel+  ++d+ +++p         +en   ++ee++k+
  MMETSP1174-20130828|5959_1  24 PNMNVYGERGWTLYKHLRKKLEARKKELQKMKDDKKKVKPSA-------EENGMEAGEEEFKK 79 
                 5666666777788999************************98.......66777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|5961_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1174-20130828|5962_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.4   0.0    2.3e-06   25.1   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.9e-05   20.6   0.0    2.1e-05   20.4   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.5e-05   21.4   0.1    4.5e-05   21.0   0.1    1.3  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    3.5e-05   20.4   0.0    3.7e-05   20.3   0.0    1.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0032   13.5   0.0     0.0036   13.4   0.0    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.8e-09   2.3e-06     140     194 ..      11      65 ..       6     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.8e-09
   TIGR02521 140 NaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                 Nag  +++ ++ e+a + ++ al++dp+ +  ll+l +l+lk+g+  +A ++++ 
  MMETSP1174-20130828|5962_1  11 NAGRAYMQMNESEHAVACFRAALEMDPTCAAGLLDLGQLSLKRGETSSALSYFDS 65 
                 9999999999999999999999999999999999999999999999999999875 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.5e-08   2.1e-05     466     528 ..       7      69 ..       4      92 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.5e-08
   TIGR02917 466 slynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlai 528
                 + ++  g +y++ ++++ A + f++AL+++p  ++ l  L +l l+ ++   A  +f++++  
  MMETSP1174-20130828|5962_1   7 LPQVNAGRAYMQMNESEHAVACFRAALEMDPTCAAGLLDLGQLSLKRGETSSALSYFDSAIES 69 
                 566667777777777777777777777777777777777777777777777777777777754 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.5e-08   4.5e-05      59     121 ..      13      75 ..       6      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.5e-08
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekee 121
                 + ++++++e e+A+a++ +a+ +d+  ++ ++ +++  l+ ge+ +Al+ ++ aie +++ +e
  MMETSP1174-20130828|5962_1  13 GRAYMQMNESEHAVACFRAALEMDPTCAAGLLDLGQLSLKRGETSSALSYFDSAIESSRSFPE 75 
                 67899***************************************************9986554 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.6e-08   3.7e-05     509     584 ..       8      82 ..       5      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.6e-08
   TIGR00990 509 PlinkalalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklferaaelarteeelvqaisy 584
                 P +n   a +++ e    a      al +dP +      l ql l++++ + al +f+ a e +r   e+ ++++ 
  MMETSP1174-20130828|5962_1   8 PQVNAGRAYMQMNE-SEHAVACFRAALEMDPTCAAGLLDLGQLSLKRGETSSALSYFDSAIESSRSFPEMHDSMTC 82 
                 55666666666544.345666677899**************************************99998877765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.4e-06    0.0036      92     188 ..      12     111 ..       6     114 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.4e-06
   TIGR03939  92 lAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfp..sdaerlealaYvlraaedsldalaai.qqalrlePdnk 188
                 +++A+ +  + + A++ +r +l+ dP+ + +ll l   ++  g++++Al++ +++ e+ +  ++ +  ++  +v+ a +++ld l+++ ++ l++ePd +
  MMETSP1174-20130828|5962_1  12 AGRAYMQMNESEHAVACFRAALEMDPTCAAGLLDLGQLSLKRGETSSALSYFDSAIESSRsfPEMHDSMTCKRVALAHKRALDTLQSSsSSELTTEPDAR 111
                 5677888888899****************************************998877756788888999**************9861578*****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 455.96
//
Query:       MMETSP1174-20130828|5963_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 496.39
//
Query:       MMETSP1174-20130828|5960_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-60  201.9   0.0    2.5e-36  123.2   0.0    2.6  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    9.2e-55  184.3   0.8    5.3e-34  115.8   0.0    3.1  3  TIGR02053 MerA: mercuric reductase
      1e-42  144.1   0.7    5.1e-21   72.6   0.0    3.1  3  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    2.8e-36  123.2   0.1    1.1e-21   75.1   0.0    2.2  2  TIGR03452 mycothione_red: mycothione reductase
    3.9e-36  123.0   0.2    7.6e-35  118.8   0.1    2.5  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    9.8e-24   81.9   0.3    3.8e-22   76.6   0.2    2.8  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    1.4e-20   71.1   1.5      4e-14   49.8   0.1    3.4  3  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.1e-16   58.4   0.8    8.3e-10   35.8   0.1    3.2  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    9.5e-13   45.5   0.0    1.7e-05   21.6   0.0    4.0  4  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    1.8e-12   44.4   1.1    1.5e-07   28.2   0.1    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    2.5e-10   37.5   0.1      0.021   11.5   0.0    3.2  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.3e-10   37.1   3.4    5.4e-06   23.3   0.1    3.2  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    8.1e-10   34.6   2.5    1.7e-07   26.9   0.0    2.9  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.3e-06   25.1   0.5     0.0095   12.4   0.1    3.1  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    2.6e-06   25.1   1.5    4.7e-06   24.3   0.6    1.7  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.2e-05   22.4   0.3     0.0014   15.6   0.0    2.2  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    1.4e-05   20.9   1.3    2.9e-05   19.9   0.9    1.4  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    5.6e-05   19.5   0.8     0.0055   13.0   0.1    2.4  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    0.00021   17.6   2.8     0.0023   14.2   0.1    2.8  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00023   17.9   0.8     0.0076   12.9   0.0    2.7  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0016   14.9   1.7      0.026   10.9   0.1    2.6  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0017   15.1   1.3     0.0059   13.3   0.5    2.0  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0018   14.9   1.3      0.085    9.3   0.1    2.6  2  TIGR00551 nadB: L-aspartate oxidase
     0.0045   13.6   4.2       0.04   10.5   0.7    2.4  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
  ------ inclusion threshold ------
      0.011   12.7   0.1      0.018   12.0   0.1    1.3  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
      0.017   11.6   2.0       0.24    7.9   0.2    2.2  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.039   10.6   0.0       0.12    9.0   0.0    1.7  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
       0.04    9.9   5.1       0.15    8.0   0.1    3.2  4  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.1   4.1e-24     6e-22       2     235 ..      15     272 ..      14     299 .. 0.80
   2 !  123.2   0.0   1.7e-38   2.5e-36     227     453 ..     305     537 ..     286     543 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.8 bits;  conditional E-value: 4.1e-24
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklG.......GtClnvG...CiPtKalLksaevveelkeakelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklld.............kkevevkkekke.kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvi...elldrilp..aldaevskvlkkklkkkgvkiltnakvt 235
                 +d++v+G+Gp G  aA  aa+ g +v lv+  ++        G+ l  G    + +Kal  +++ ++ ++++  +gi+ +++  ++  + ++  ++   l    +  l++ +v+ ++G a++l              ++++ev + ++e   ++akn+++AtGs+  +++  + +de +v++s+++  lk +p+s++i G+G+i +E+a if++lG++vt++    + ++ l+   ld++v+ +l + l ++g++i  + +  
  MMETSP1174-20130828|5960_1  15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSgalmdgdGMDLSLGgptGLFSKALRDTSKRIS-VSTLRGMGISENSIWSEVCLVCQQLARINA-LDR--SRTLQSVGVTRFTGFARFLPfdvesgtdvaggrETNLEVVSADGEpAPIRAKNVLVATGSSAFRPKS-IPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLirdRVPKNALQkiGLDTDVAATLVSDLVRSGIRIERGVQAV 272
                 8******************************666503444344556666333367899999999998.899999**9887777777766666665543.333..5778999**********9998898888888888777877777766789****************999.8888888*****************************************983322223344422479*****************98877655 PP

  == domain 2    score: 123.2 bits;  conditional E-value: 1.7e-38
   TIGR01350 227 kiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkeks...........eidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaala 453
                 +i+ +  v+    + +++ +e++k +++++++++ L avGr+pn+e+lgl ++gv++de g + vd++ +t+vpgiy  GDv+g++ LA + +++g  a+++++ + ++           + d  a P  ++t+Pe a  Glt +qa+++g++ + g   ++ + +  +    dG++k+++dk+tg ilG+hivg +a eli+  + +v+ + t+++++  ++   t+ E  + aa+a
  MMETSP1174-20130828|5960_1 305 RITLEPAVQ----KGKKFGAEKRKVQEKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMFSDDEEkrnmvdksfdlAKDPFAFPVGVWTSPESAYYGLTIKQAQDRGYDGAEGLALYRECLRGCVF-SPDGLLKLVFDKTTGVILGVHIVGDDACELIHYGMELVRGGRTMTDVTGNMYSAVTFHELYQIAARA 537
                 555555554....3444445555556799**************************************************************************966555578888877766677799******************************9999999998876.589*********************************************9999999999998877765 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00016     0.024       1      31 [.      15      45 ..      15      52 .. 0.92
   2 !   54.0   0.0   2.1e-17     3e-15     117     262 ..     152     298 ..     140     315 .. 0.80
   3 !  115.8   0.0   3.6e-36   5.3e-34     243     452 ..     317     537 ..     298     540 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00016
   TIGR02053  1 ydlviiGsGaaafaaaikaaelgakvvlver 31
                +dl+++G G  ++ aa++aae g++v lv+ 
  MMETSP1174-20130828|5960_1 15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDA 45
                59**************************985 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 2.1e-17
   TIGR02053 117 ktvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkee......epeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellv 262
                 + v++d + + + ak+vl+AtG+++ +P+    +e+ +l+s+++  l+ +p+s+++ G+g ia+E a++f+rlG +vtll r  r+ k+       + +++a++ + l + G+++ + +++ + ++   g    t ++ +sk+ v+ de ++
  MMETSP1174-20130828|5960_1 152 EVVSADGEPAPIRAKNVLVATGSSAFRPKSIPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRD-RVPKNAlqkiglDTDVAATLVSDLVRSGIRIERGVQAVNFEVP--GSP--TSKGAGSKEVVRLDESFI 298
                 5677887889999999************9888************************************************997.3433321111337778888888899999999999988777774..333..455666667777777666 PP

  == domain 3    score: 115.8 bits;  conditional E-value: 3.6e-36
   TIGR02053 243 lvtvekndsk.keveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeak.......ldle....vlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAla 452
                 +   ek++++ k v +d+ l A GR+pn++gL+L ++gv +de G+++vd++ +ts p+iy AGDv++ + l s   ++G  a + ++ + e+k       +dl     ++P  v+t+Pe A  Glt ++++  g++ +   +   +  r+ + ++  Gl+Klv +k t+ +lgv++v+++A e+i+     ++ g t+ d+   + +  t+ E  ++AA a
  MMETSP1174-20130828|5960_1 317 KFGAEKRKVQeKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMFSDDEEKrnmvdksFDLAkdpfAFPVGVWTSPESAYYGLTIKQAQDRGYDGAEGLALYRECLRGCV-FSPDGLLKLVFDKTTGVILGVHIVGDDACELIHYGMELVRGGRTMTDVTGNMYSAVTFHELYQIAARA 537
                 3445555554156899********************************************************************99998765542221111333233339***************************9988888888888877.6789********************************************************99999975 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   9.8e-05     0.014       3      39 ..      15      51 ..      14      54 .. 0.93
   2 !   56.1   0.0   3.4e-18     5e-16     123     226 ..     154     267 ..     136     278 .. 0.82
   3 !   72.6   0.0   3.5e-23   5.1e-21     239     427 ..     319     516 ..     288     528 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.8e-05
   TIGR01424  3 ydlfviGaGsGGvraarlaaalGakvaiaeedlvGGt 39
                +dl v+GaG  Gv aa  aa++G+ v++++ + + G+
  MMETSP1174-20130828|5960_1 15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGA 51
                9***************************999988875 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 3.4e-18
   TIGR01424 123 le.dgk..tytaekiliavGgrpvkpe.lPGaelai.tsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrg...ekilr..gfdddvraelaeeleerGirill 226
                  + dg+   + a+++l+a+G+ + +p+ +P  e+ +  sd +  l+ lP+si++ G+G ia+e+a if+ lG+ vtll+r+   ++ l+  g+d dv a+l ++l + Giri  
  MMETSP1174-20130828|5960_1 154 VSaDGEpaPIRAKNVLVATGSSAFRPKsIPFDEMRVlDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDrvpKNALQkiGLDTDVAATLVSDLVRSGIRIER 267
                 33355444789************988549****97527999999************************************8333456654479******************965 PP

  == domain 3    score: 72.6 bits;  conditional E-value: 3.5e-23
   TIGR01424 239 GlkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaa.....afaetefknnptkadhdlv....a..tavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkd 427
                 G      +++ +  d+ l a+Gr+Pn++glgl ++Gv+ ++ g ++vd   +tsvp+iy  Gdv  r  l+   + ++a      f + e k n+ + ++dl     a    v++ Pe a  Gl+ ++a+++  d +e +    + ++  +       llklv d+ +  +lG+h+vG+da e+i      ++ G t +d
  MMETSP1174-20130828|5960_1 319 GAEKRKVQEKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAkavkhMFSDDEEKRNMVDKSFDLAkdpfAfpVGVWTSPESAYYGLTIKQAQDRGYDGAEGLALYRECLRGCVFS--PDGLLKLVFDKTTGVILGVHIVGDDACELIHYGMELVRGGRTMTD 516
                 45555667778889*****************************************************7776655555431122268888888888888887642222322679****************998766555443332333333332..3459*************************9987777777777655 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   4.5e-15   6.7e-13     122     203 ..     151     236 ..      13     276 .. 0.70
   2 !   75.1   0.0   7.4e-24   1.1e-21     250     427 ..     328     514 ..     301     528 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 4.5e-15
   TIGR03452 122 lrtedgee....itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsek 203
                 l++ +++     i a++v++a+Gs ++ p+ i   ++r   ++ +  l+ lp+s+ i G+G+ia+e+a++f+ lG++vtl++r  +
  MMETSP1174-20130828|5960_1 151 LEVVSADGepapIRAKNVLVATGSSAFRPKSIPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDRV 236
                 4433333233679********************99***********************************************9753 PP

  == domain 2    score: 75.1 bits;  conditional E-value: 7.4e-24
   TIGR03452 250 stveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvs.spyqlkhvanaearvvkhnllkd..........edlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafglda 427
                 ++v+ d  l a+Gr+pn++ l + + Gv+ de g v+vd  q ts+ g++  Gdv   p+       + a++vkh +  d           dl k +    p +v+t p  a  Glt ++a+++G+d +  +  y +   G      +gl kl+ dk tG +lG hi+G +a  li   ++ +  g + 
  MMETSP1174-20130828|5960_1 328 KVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVgRPFLASTGVAQGAKAVKHMFSDDeekrnmvdksFDLAKDP-FAFPVGVWTSPESAYYGLTIKQAQDRGYDGAEGLALYRECLRGCVFS-PDGLLKLVFDKTTGVILGVHIVGDDACELIHYGMELVRGGRTM 514
                 678999************************************************862688888878889*******999977755544222233322.2469***************************************8775.689**************************98766666555555 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.1   5.2e-37   7.6e-35       2     430 ..      14     515 ..      13     528 .. 0.80

  Alignments for each domain:
  == domain 1    score: 118.8 bits;  conditional E-value: 5.2e-37
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcv......Pkkvmwya.aslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaef...tkdetvevngke...............ytakhiliatGgkpsipeniPGaelg.ldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrerv...lrs..fdelisekvveelekaglevhklskvvkve.......ktvegklvitledg..............................keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegk......edakldye....nvPtvvfshPeigtvGltekeaiek.y.GkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatka 430
                 ++d++v+G G  G+ +a  aae G  + lv++ +  G+ ++   +      P  +  +a  +++++++ +   G+  ++++ ++   l+ ++ a ++ l+    ++l++  v + +G+a+f     ++  +v g +               ++ak +l+atG+ +  p+ iP  e+  ldsd +  l+ lP++++i G+G ia+e a +++ lG++  l+ir   +   l++  +d  ++ ++v +l+++g+++ +  + v+ e       k + +k+v+ l+++                              +++ +vd+ + a+Gr pnt++lgl  +gv  de g ++vd  q+t+v+giy  GdvvG+  l+   +a G k  + +f  +       d+ +d        P  v++ Pe +  Glt k+a ++ y G e + +y+  +    ++      +  lklv   +   ++G+hi+G+ + el+      ++ G t +
  MMETSP1174-20130828|5960_1  14 SFDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALMDGDGMdlslggPTGLFSKAlRDTSKRISVSTLRGMGISENSIWSEVCLVCQQLARINALDR--SRTLQSVGVTRFTGFARFlpfDVESGTDVAGGRetnlevvsadgepapIRAKNVLVATGSSAFRPKSIPFDEMRvLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDRVPknaLQKigLDTDVAATLVSDLVRSGIRIERGVQAVNFEvpgsptsKGAGSKEVVRLDESfisnrqpiritlepavqkgkkfgaekrkvqEKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMFSDDeekrnmVDKSFDLAkdpfAFPVGVWTSPESAYYGLTIKQAQDRgYdGAEGLALYRECLRGCVFS-----PDGLLKLVFDKTTGVILGVHIVGDDACELIHYGMELVRGGRTMT 515
                 69******************************999998887665511111144444333124445555444455555544444555556666666666654..689**************83332344555655444677888888999***********************9998527*******************************************8644222654336999****************9999888876444433366677999999999**************************999888999*************************************************************************87633222223334443222258999*****************986445999999999988776554.....57899*******************99999874444555565555 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2   2.6e-24   3.8e-22       2     436 ..      14     502 ..      13     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 2.6e-24
   TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaal.lGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdk....kkkeeils.........akrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrsillr......GfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea....................................kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskei...vd..ye......nvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtq 436
                  +dliv+G+G+ G+ aa  aa+ g+ v l+d+  p   G      G    +G  p  l  +a     k +  s   G  ++e     w +++   q+  + +      +l++  v+ + ++a++   dv ++td     +++ e++s         ak+vl+atG     p+ i+ +    + sd +  lk  p    + G++ +a+e a  ++ lg dvt+l+r  + +      G+d d+a  +   l   G+++ ++v++ + e  ++                                    k+      k +  +   d+ l a+Gr++++++l+l ++gv  ++  g +++d  ++t+vp+iy  Gd+v +++ l+   +  G    + +f+d +e+   vd  ++        p  v+t  e +  Gl+ ++a +  G +  e    +   l  +v s +     + k+v  k     ++G+h+vG +a+e++ 
  MMETSP1174-20130828|5960_1  14 SFDLIVLGAGPVGVGAALAAAESGRSVCLVDA--PEYSGALMDGDGMDLSLGG-PTGLFSKALRdTSKRISVSTLRGMGISE--NSIWSEVCLVCQQLARINALDRSRTLQSVGVTRFTGFARFLPFDVESGTDVaggrETNLEVVSadgepapirAKNVLVATGSSAFRPKSIPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDRVPKnalqkiGLDTDVAATLVSDLVRSGIRIERGVQAVNFEVPGSptskgagskevvrldesfisnrqpiritlepavqkgKKFGAEKRKVQEKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGG-VIVDSNQETSVPGIYGAGDVV-GRPFLASTGVAQGAKAVKHMFSDDEEKrnmVDksFDlakdpfAFPVGVWTSPESAYYGLTIKQAQD-RGYDGAEGLALYRECLRGCVFSPDG----LLKLVFDKT-TGVILGVHIVGDDACELIH 502
                 69*****************************8..5555666655666666665.6666666643156677788888998888..678*999999999988888899999***************9888777777533322233444422222222279**********99*******88899******************************************9755333333459*****************************999999999*************************999965533333334555566678999**********************99755.789999*************99.7999******************98876222322243333333468899999999999999988866.4788888888888888888888777....899998765.5689999999999999885 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.05       7.4       2      35 ..      13      45 ..      12      55 .. 0.78
   2 !   15.4   0.0   7.4e-06    0.0011     151     250 ..     164     267 ..     155     295 .. 0.76
   3 !   49.8   0.1   2.8e-16     4e-14     272     438 ..     327     502 ..     283     529 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.05
   TIGR01423  2 kaydlvvigagsggleagwnaaslykkrvavvdl 35
                +++dl+v+gag  g+ a   aa    + v++vd 
  MMETSP1174-20130828|5960_1 13 ESFDLIVLGAGPVGVGAALAAAE-SGRSVCLVDA 45
                57***************998776.4556777775 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 7.4e-06
   TIGR01423 151 daeyillatgswpqm.lkiegiel.cissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrn.....dmilrgfdselrkeltkqlvangidvrt 250
                  a+ +l+atgs       i+ +e+ ++ s+    l+  p+ + + g g i++e+a if+     g +v+l  r+          g+d+++   l  +lv  gi +  
  MMETSP1174-20130828|5960_1 164 RAKNVLVATGSSAFRpKSIPFDEMrVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQ---RLGADVTLLIRDrvpknALQKIGLDTDVAATLVSDLVRSGIRIER 267
                 67889*****987551568988872557788889***********************96...578899998886222103334599**************9998864 PP

  == domain 3    score: 49.8 bits;  conditional E-value: 2.8e-16
   TIGR01423 272 gkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprk...tdht.kvasa.......vfsippigvcglveeeaakk.ye...kvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiq 438
                  k + vd  + a+gr p ++ l l ++gv+  + g + vd+  +t v+ iy  gdv +r +l+   + +ga  v  +f++   k    d++  +a         v++ p     gl+ ++a  + y+    +a+y  ++   +           + k+v d++ g +lgvh++gd + e+i 
  MMETSP1174-20130828|5960_1 327 EKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMFSDDEEKrnmVDKSfDLAKDpfafpvgVWTSPESAYYGLTIKQAQDRgYDgaeGLALYRECLRGCVFSPD------GLLKLVFDKTTGVILGVHIVGDDACELIH 502
                 3567899999********************************************************************976544111333223444300011114555555666777776654325411145677777666655544......4899**********************996 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.6e-05     0.013       2      41 ..      16      55 ..      15      77 .. 0.91
   2 !    7.2   0.0    0.0029      0.43      99     173 ..     163     234 ..     144     264 .. 0.78
   3 !   35.8   0.1   5.7e-12   8.3e-10     217     295 ..     322     402 ..     294     405 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.6e-05
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlttt 41
                d+i++GaGp G+ aa+ aa ++ ++ l++  e  g+l+  
  MMETSP1174-20130828|5960_1 16 DLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALMDG 55
                89****************************9999999865 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0029
   TIGR01292  99 ykakaviiAtGaka.rklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrr 173
                  +ak v++AtG++a r  +i+    f +  v       g  f  +++a+ G+g  A+e a  +++++ +Vtl+ r 
  MMETSP1174-20130828|5960_1 163 IRAKNVLVATGSSAfRPKSIP----FDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRD 234
                 567778888887763444555....5555566666668888999***************************98874 PP

  == domain 3    score: 35.8 bits;  conditional E-value: 5.7e-12
   TIGR01292 217 tktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGaiAals 295
                 +++ +e+ ++vd+   a+G +pnte l      +++de g ++vd++++Tsv+G++ aGDv  + +  + t +++Ga A+ +
  MMETSP1174-20130828|5960_1 322 KRKVQEKVVSVDAYLAAVGRTPNTEGLGLGtigVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPF-LASTGVAQGAKAVKH 402
                 4566788999***************876444699*****************************766.5889999**999865 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15        22     144     184 ..       9      49 ..       3      60 .. 0.81
   2 !   12.3   0.0   7.9e-05     0.012     149     217 ..     202     272 ..     170     291 .. 0.82
   3 !   21.6   0.0   1.2e-07   1.7e-05     226     283 ..     324     383 ..     298     391 .. 0.83
   4 ?    4.7   0.0     0.016       2.4     374     416 ..     475     516 ..     471     524 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.15
   TIGR03385 144 ldkkkvekvvviGgGyiglemvealkergkevtlierseki 184
                 +++ +  +++v+G+G +g+  + a+ e g  v l++  e+ 
  MMETSP1174-20130828|5960_1   9 VEDAESFDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYS 49 
                 5666777899************************9987765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 7.9e-05
   TIGR03385 149 vekvvviGgGyiglemvealkergkevtliers...ekilnkl.lDeeiakiveeelekkeielrlneevksv 217
                  +++++ G+G+i++e +  +++ g +vtl+ r+   ++ l+k+ lD+++a+ +  +l + +i  r++  v++v
  MMETSP1174-20130828|5960_1 202 PRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDrvpKNALQKIgLDTDVAATLVSDLVRSGI--RIERGVQAV 272
                 5789*************************998733345666645999*99988888877744..555666655 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 1.2e-07
   TIGR03385 226 ltsgkvyqaDlvilavGvkPnseli..kssqlklgkkGaikvnekfqtsveniyaiGDva 283
                   ++kv ++D+ + avG  Pn+e +     ++  ++ G ++v+ + +tsv+ iy +GDv+
  MMETSP1174-20130828|5960_1 324 KVQEKVVSVDAYLAAVGRTPNTEGLglGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVV 383
                 44678999**************9752257799999***********************97 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.016
   TIGR03385 374 llklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkd 416
                 llkl+++k t  ilg+ +vG + + + i+     +  + t+ d
  MMETSP1174-20130828|5960_1 475 LLKLVFDKTTGVILGVHIVGDD-ACELIHYGMELVRGGRTMTD 516
                 69******************99.66666665555555555555 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05    0.0016     205     251 ..       7      54 ..       1      81 [. 0.83
   2 !   28.2   0.1     1e-09   1.5e-07     429     509 ..     322     404 ..     310     408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   TIGR03140 205 eaeeekekydvlvvGgGPagaaaaiyaarkGlkvalv.aeriGGqvkd 251
                    e+ e +d++v+G+GP g+ aa+ aa  G +v+lv a    G  +d
  MMETSP1174-20130828|5960_1   7 MVVEDAESFDLIVLGAGPVGVGAALAAAESGRSVCLVdAPEYSGALMD 54 
                 5568899**************************999944455555555 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 1e-09
   TIGR03140 429 rsseeekkleldGvfvqiGlvpnteflk.da..velnrrGeividergrtsvkGifaaGdvttvpykqiiiamGeGakaalsaf 509
                 + + +ek +++d  +  +G  pnte l  ++  v+ +++G +++d++ +tsv+Gi+ aGdv   p+      + +Gaka    f
  MMETSP1174-20130828|5960_1 322 KRKVQEKVVSVDAYLAAVGRTPNTEGLGlGTigVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLA-STGVAQGAKAVKHMF 404
                 445578999****************8853334699*****************************9965.446667888766555 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00018     0.027       1      29 [.      16      44 ..      16      53 .. 0.91
   2 !   11.5   0.0   0.00014     0.021     104     186 ..     152     236 ..     138     260 .. 0.85
   3 !   10.9   0.0   0.00021      0.03     224     290 ..     320     384 ..     293     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
   TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliie 29
                d+i++GaGP+G+ aa++a ++g s+ +++
  MMETSP1174-20130828|5960_1 16 DLIVLGAGPVGVGAALAAAESGRSVCLVD 44
                79*******************99998887 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00014
   TIGR04018 104 evkt...ekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgee 186
                 ev +   e + ++ak+v+vatG     +   +p +++  +     +  +++ +++++ G+   a++ a   +r ga+vtl++r++ 
  MMETSP1174-20130828|5960_1 152 EVVSadgEPAPIRAKNVLVATGSS-AFRPKSIPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDRV 236
                 5555444556789*********85.566779***************************************************9865 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00021
   TIGR04018 224 vtletpegeveeiendfvlaltGyrpdlelleklgveleedekipvydeetmEtnveglylaGvvaa 290
                    e+++ +++ ++ d  la +G +p++e l    + ++ de   v  +++ Et+v+g+y aG v++
  MMETSP1174-20130828|5960_1 320 A--EKRKVQEKVVSVDAYLAAVGRTPNTEGLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVG 384
                 3..444445556999**************98877777777775666666779***********9875 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1     0.003      0.43     129     172 ..      10      53 ..       3      59 .. 0.86
   2 !    5.8   0.0    0.0072       1.1     273     304 ..     203     234 ..     193     250 .. 0.88
   3 !   23.3   0.1   3.7e-08   5.4e-06     370     444 ..     326     402 ..     305     405 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.003
   TIGR01316 129 apstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                 +++  + + v+GaGp G+  a   a  G +v + +a +  G ++
  MMETSP1174-20130828|5960_1  10 EDAESFDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALM 53 
                 567778899***********************999977776655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0072
   TIGR01316 273 kkvvviGgGntavdaartalrlGaevhvvyrr 304
                 +++ + G+G +a++ a+  +rlGa+v+++ r 
  MMETSP1174-20130828|5960_1 203 RSIAITGSGIIAIEYAKIFQRLGADVTLLIRD 234
                 678899*********************99874 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 3.7e-08
   TIGR01316 370 eevkleadavivaiGqeank..iiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraaka 444
                 +e ++ +da + a+G+ +n   +   + ++   + G ++vd ++ets++G++  Gdv+         +++G +a k 
  MMETSP1174-20130828|5960_1 326 QEKVVSVDAYLAAVGRTPNTegLGLGTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKH 402
                 5678999***********973244555589999************************98777777888888888775 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0032      0.47     535     573 ..      12      50 ..       2      54 .. 0.84
   2 ?    0.3   0.0      0.13        18     539     608 ..     204     269 ..     196     277 .. 0.79
   3 !   26.9   0.0   1.2e-09   1.7e-07     763     853 ..     330     422 ..     303     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0032
   TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekag 573
                 +e   + v+GaGP G+ a++  a +G +v +++  e +g
  MMETSP1174-20130828|5960_1  12 AESFDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSG 50 
                 5556789************************99877655 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   TIGR03315 539 kvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkniiPefrisaeviqkdlelvkkkGvefklGv 608
                  +a+ G+G   +  + +++r G +vt++ ++  +   +++i  +  ++a ++    +lv   G++++ Gv
  MMETSP1174-20130828|5960_1 204 SIAITGSGIIAIEYAKIFQRLGADVTLLIRDRVPKNALQKIGLDTDVAATLVS---DLV-RSGIRIERGV 269
                 699*************************9999998888888777666666654...344.3466666665 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 1.2e-09
   TIGR03315 763 leadaviaavGeqvdtell..kklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakailsrenlnsdl.kkvlavde 853
                 + +da +aavG+  +te l    +g++ de g v v+++ +etsv++++ +Gd+   P      +a+g ka k+++s ++ + ++ +k + + +
  MMETSP1174-20130828|5960_1 330 VSVDAYLAAVGRTPNTEGLglGTIGVDCDEFGGVIVDSN-QETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMFSDDEEKRNMvDKSFDLAK 422
                 689*************975226899999***********.***********************************9988776666588877655 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0093       1.4       5      40 ..      15      50 ..      12      56 .. 0.86
   2 ?    3.9   0.0     0.024       3.6     101     175 ..     163     234 ..     146     243 .. 0.80
   3 !   12.4   0.1   6.5e-05    0.0095     242     303 ..     339     402 ..     314     419 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0093
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekdelGG 40
                +dl+v+G+Gp g+ a + a+ +  +v +++  e  G
  MMETSP1174-20130828|5960_1 15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSG 50
                8*******************9999998888777666 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.024
   TIGR03143 101 lkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivre 175
                 ++a  vl+atG+s+ +        f    v    + +G  f    + + G+G  a e a  + + +  vt+++r+
  MMETSP1174-20130828|5960_1 163 IRAKNVLVATGSSAFRPKS---IPFDEMRVLDSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLIRD 234
                 5677788888887644332...23444456677788899999999****************************97 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 6.5e-05
   TIGR03143 242 vGyvPsself...kgkvelderGyvvtnedletnveGvyaaGdlrvkelrqvvtavadGaiaate 303
                 vG +P++e +      v+ de G v+ + + et+v+G+y aGd+  + +    t va Ga a  +
  MMETSP1174-20130828|5960_1 339 VGRTPNTEGLglgTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVVGRPF-LASTGVAQGAKAVKH 402
                 677777774421133467789999*******************977665.457888888877655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.6   3.2e-08   4.7e-06       1      43 [.      15      57 ..      15      76 .. 0.92
   2 ?   -2.4   0.0       4.3   6.3e+02     125     157 ..     153     184 ..     137     192 .. 0.63

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.2e-08
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCgga 43
                +D++v GaGp G  aAl +a++G++V l++  e ++++  g++
  MMETSP1174-20130828|5960_1 15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALMDGDG 57
                7*****************************9999888776666 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 4.3
   TIGR02032 125 kvevredekkevtakivigAdGakskvakklgl 157
                 +v++++ e   ++ak v  A+G++    k++++
  MMETSP1174-20130828|5960_1 153 VVSADG-EPAPIRAKNVLVATGSSAFRPKSIPF 184
                 333333.56778888888888886555555555 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.7e-06    0.0014       2      31 ..      16      45 ..      15      77 .. 0.90
   2 ?    4.9   0.0     0.017       2.5       2      38 ..     204     240 ..     203     243 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.7e-06
   TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvier 31
                d++v GaG vG+  Alaaa+ G +V++++ 
  MMETSP1174-20130828|5960_1 16 DLIVLGAGPVGVGAALAAAESGRSVCLVDA 45
                99*************************995 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.017
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGA 38 
                 ++++ G+Gi+ + +A   +r G  Vt++ r+  ++ A
  MMETSP1174-20130828|5960_1 204 SIAITGSGIIAIEYAKIFQRLGADVTLLIRDRVPKNA 240
                 589*************************999988776 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.9   1.9e-07   2.9e-05     169     206 ..      15      51 ..       9      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.9e-07
   TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGs 206
                  D++v+GaGp G+ aA+aAa++G +v lvd  +  G +
  MMETSP1174-20130828|5960_1  15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSG-A 51 
                 599***************************866555.4 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0098       1.4     100     207 ..     168     273 ..     148     319 .. 0.74
   2 !   13.0   0.1   3.8e-05    0.0055     225     278 ..     328     383 ..     301     420 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0098
   TIGR02374 100 LilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvi..elap..llmakqlDqtagrlLqrelekkGltvlleketve 207
                 +++atGs++f +     D+  v       D d+++      +  a+ G+G++ +e a+ +++lG dv  +  +  p   l +  lD   ++ L   l + G+++  + ++v+
  MMETSP1174-20130828|5960_1 168 VLVATGSSAFRPKSIPFDEMRVL------DSDSVNGLKFLPRSIAITGSGIIAIEYAKIFQRLGADVTLLirDRVPknALQKIGLDTDVAATLVSDLVRSGIRIERGVQAVN 273
                 56677777776654444444333......445554444445566999*******************9976233344214666679999999999999999999987777665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 3.8e-05
   TIGR02374 225 ssleadlvvlaaGirPrde.Laa.eaGlkvndrrGiivndsmqtsdPdiyavGeca 278
                 +++ +d  + a+G  P++e L+  + G++ ++ +G+iv+   +ts P iy  G++ 
  MMETSP1174-20130828|5960_1 328 KVVSVDAYLAAVGRTPNTEgLGLgTIGVDCDEFGGVIVDSNQETSVPGIYGAGDVV 383
                 6788999999*******986665257***************************986 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.6e-05    0.0023     380     416 ..      15      51 ..       2      80 .. 0.87
   2 ?    0.3   0.0      0.25        37     444     492 ..     139     193 ..     135     199 .. 0.70
   3 ?    1.7   0.0     0.095        14     379     456 ..     202     273 ..     190     335 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
   TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeelGG 416
                   ++v+G+GP G+ aa  aa+ G +v l++  e  G 
  MMETSP1174-20130828|5960_1  15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGA 51 
                 5689*************************99887775 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.25
   TIGR03997 444 lgvevklGveadaelvlae.kP.....DavvlatGsrparpdlagadservvtvr 492
                 +g +v  G e++ e+v a+ +P       v++atGs + rp+   +d+ rv++  
  MMETSP1174-20130828|5960_1 139 SGTDVAGGRETNLEVVSADgEPapiraKNVLVATGSSAFRPKSIPFDEMRVLDSD 193
                 5666777777777777665222112225699**********99888999998765 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.095
   TIGR03997 379 rkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselkelgvevklGveada 456
                 ++ + + G+G   +e a+   r G +vtll r++ +  +++ +         +++  +l+s+l ++g+ ++ Gv+a +
  MMETSP1174-20130828|5960_1 202 PRSIAITGSGIIAIEYAKIFQRLGADVTLLIRDRVPKNALQKIGLD------TDVAATLVSDLVRSGIRIERGVQAVN 273
                 48899****************************9998877655433......56777888889999999999998865 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.11        15     146     182 ..      17      53 ..       8      62 .. 0.86
   2 ?   -1.2   0.0      0.99   1.4e+02     145     174 ..     204     233 ..     199     245 .. 0.88
   3 !   12.9   0.0   5.2e-05    0.0076     372     456 ..     299     385 ..     264     405 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.11
   TIGR01317 146 vavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                 + v+G+GP G+ aa   +++G +v + +  +  G l+
  MMETSP1174-20130828|5960_1  17 LIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALM 53 
                 6799********************9998888777765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.99
   TIGR01317 145 kvavvGsGPaGlaaadqlnraGhtvtvfer 174
                  +a+ GsG   +  a+ ++r G +vt+  r
  MMETSP1174-20130828|5960_1 204 SIAITGSGIIAIEYAKIFQRLGADVTLLIR 233
                 689***********************9876 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 5.2e-05
   TIGR01317 372 kavrtvevelkkd.edG.kyeleevpgseevleadlvllalGfv.gpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrG 456
                 ++ + ++++l+   ++G k+  e+ +  e+v+  d  l a+G + ++e   l  +gvd de g +  + ++ ets++G++ aGd+   
  MMETSP1174-20130828|5960_1 299 SNRQPIRITLEPAvQKGkKFGAEKRKVQEKVVSVDAYLAAVGRTpNTEGLGLGTIGVDCDEFGGVIVDSNQ-ETSVPGIYGAGDVVGR 385
                 5555555554432134426888889999**************88356666899************766655.5***********8654 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.067       9.9     144     180 ..      17      53 ..       7      92 .. 0.82
   2 ?   -2.3   0.0       1.8   2.7e+02     142     170 ..     203     231 ..     195     241 .. 0.81
   3 !   10.9   0.1   0.00018     0.026     375     462 ..     320     404 ..     289     406 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.067
   TIGR01318 144 vaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180
                 + v+GaGp G++ a   a +G  v + d  +  G l+
  MMETSP1174-20130828|5960_1  17 LIVLGAGPVGVGAALAAAESGRSVCLVDAPEYSGALM 53 
                 6799******************999999866666554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.8
   TIGR01318 142 krvaviGaGpaGlacadvlaraGvkvvvf 170
                 + +a+ G+G   +  a +++r G +v++ 
  MMETSP1174-20130828|5960_1 203 RSIAITGSGIIAIEYAKIFQRLGADVTLL 231
                 5689*****************99998765 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00018
   TIGR01318 375 aeivaGseavleadvviiafGfephamew.laehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegil 462
                 ae  +  e+v+  d+ + a G +p++    l + g++ d+ G ++++     + +ts p i+  Gd+v    l  t va+G ka + ++
  MMETSP1174-20130828|5960_1 320 AEKRKVQEKVVSVDAYLAAVGRTPNTEGLgLGTIGVDCDEFGGVIVD----SNQETSVPGIYGAGDVVGRPFLASTGVAQGAKAVKHMF 404
                 455566899*************998775438999***********99....55689****************************99875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.5     4e-05    0.0059       2      31 ..      18      47 ..      17      57 .. 0.90
   2 ?   -0.5   0.0      0.62        91     144     162 ..     159     177 ..     136     182 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4e-05
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknk 31
                i++G+G+ G+ aA++aae+g++V+l+++ +
  MMETSP1174-20130828|5960_1 18 IVLGAGPVGVGAALAAAESGRSVCLVDAPE 47
                9*************************9866 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.62
   TIGR00275 144 ekkeleakkvilatGgksy 162
                 e   ++ak+v++atG++++
  MMETSP1174-20130828|5960_1 159 EPAPIRAKNVLVATGSSAF 177
                 4456899*********775 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.031       4.6       2      31 ..      14      44 ..      13      53 .. 0.86
   2 !    9.3   0.1   0.00058     0.085     333     355 ..     360     382 ..     357     397 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.031
   TIGR00551  2 eadvvviGsGaagLsaalalaekyr.vvvls 31
                ++d++v+G+G  g+ aala+ae++r v ++ 
  MMETSP1174-20130828|5960_1 14 SFDLIVLGAGPVGVGAALAAAESGRsVCLVD 44
                6899********************9776664 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00058
   TIGR00551 333 iGGisvdaygrtevkGLYaiGev 355
                  GG++vd + +t+v+G+Y +G+v
  MMETSP1174-20130828|5960_1 360 FGGVIVDSNQETSVPGIYGAGDV 382
                 6********************97 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.7   0.00027      0.04       2      32 ..      15      45 ..      14      51 .. 0.92
   2 ?    3.6   0.1     0.034       4.9     366     420 ..     345     396 ..     318     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00027
   TIGR02485  2 vdvlviGgGlaglCaaiearraGasvlllea 32
                 d++v+G+G  g+ aa++a+++G sv l++a
  MMETSP1174-20130828|5960_1 15 FDLIVLGAGPVGVGAALAAAESGRSVCLVDA 45
                5899************************997 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.034
   TIGR02485 366 kPGvtftryGlkvdatarvrlndarasddlfaaGeimagnvlgkGylaGagltla 420
                   G+++  +G+  d++  v ++  ++++   + G   ag+v+g+ +la +g++  
  MMETSP1174-20130828|5960_1 345 TEGLGLGTIGVDCDEFGGVIVDSNQETS---VPGIYGAGDVVGRPFLASTGVAQG 396
                 5699999************998866666...9******************99765 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00012     0.018     135     176 ..       4      45 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
   TIGR03911 135 aldllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydk 176
                 a +++  + ++ d++v+G+G+vG++aa a  + G  v   d+
  MMETSP1174-20130828|5960_1   4 AARMVVEDAESFDLIVLGAGPVGVGAALAAAESGRSVCLVDA 45 
                 778888888999***********************9998886 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0016      0.24       1      36 [.      16      50 ..      16      60 .. 0.91
   2 ?    3.1   0.1     0.045       6.6     391     419 ..     355     384 ..     319     386 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0016
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviG 36
                d++v+G+G  G+ aal+a ++g ++v +++  ++ G
  MMETSP1174-20130828|5960_1 16 DLIVLGAGPVGVGAALAAAESG-RSVCLVDAPEYSG 50
                689*******************.9999999877776 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.045
   TIGR01813 391 vkintkaeVl.densekpikgLfAaGEvtG 419
                 v  ++   V+ d+n+e+ ++g+++aG+v G
  MMETSP1174-20130828|5960_1 355 VDCDEFGGVIvDSNQETSVPGIYGAGDVVG 384
                 5555555444289999************98 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00081      0.12       1      82 [.      16     114 ..      16     127 .. 0.65
   2 ?   -1.9   0.0       1.7   2.4e+02      73     113 ..     183     224 ..     175     250 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00081
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek...................akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsda 82 
                 d+++ G+G+vG   Ala a+s+  +v lv+a + +                    +k+   +++ +++s    +  ++  +w+++    +q++ +i+ +d+
  MMETSP1174-20130828|5960_1  16 DLIVLGAGPVGVGAALAAAESG-RSVCLVDAPEYSGalmdgdgmdlslggptglfSKALRDTSKRISVSTLRGMGISENSIWSEVCL-VCQQLARINALDR 114
                 89***************99777.9999999976665566666666666665555422222333444444444444444446666666.6666666666665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.7
   TIGR01988  73 piqkirvsdagskgalefdaaevgaeaLgyv.venkvlqqaL 113
                 p++++rv+d++s   l+f  ++++    g++ +e++++ q L
  MMETSP1174-20130828|5960_1 183 PFDEMRVLDSDSVNGLKFLPRSIAITGSGIIaIEYAKIFQRL 224
                 667777777777777777666665555554434555555544 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1     0.001      0.15       2      31 ..      14      43 ..      13      52 .. 0.92
   2 ?    0.3   0.0      0.22        32     180     199 ..     156     175 ..     137     181 .. 0.87
   3 ?    1.4   0.1       0.1        15     352     381 ..     354     382 ..     320     386 .. 0.74
   4 ?   -3.3   0.0       2.6   3.8e+02     366     389 ..     481     504 ..     477     525 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavv 31
                +fd +v+GaG  G+ aal +a++g ++  v
  MMETSP1174-20130828|5960_1 14 SFDLIVLGAGPVGVGAALAAAESGRSVCLV 43
                7***********************988765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.22
   TIGR01816 180 etGeihvfrakavvlatGGa 199
                 ++Ge   +rak+v++atG +
  MMETSP1174-20130828|5960_1 156 ADGEPAPIRAKNVLVATGSS 175
                 6899999***********75 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.1
   TIGR01816 352 GiptnlkGqvlrdadgndsiveGlyavGea 381
                 G+  +  G v++d++ ++++v+G+y +G++
  MMETSP1174-20130828|5960_1 354 GVDCDEFGGVIVDSN-QETSVPGIYGAGDV 382
                 566677799999877.8999********86 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 2.6
   TIGR01816 366 dgndsiveGlyavGeaacvsvhGa 389
                 d+++ ++ G++ vG+ ac  +h  
  MMETSP1174-20130828|5960_1 481 DKTTGVILGVHIVGDDACELIHYG 504
                 556788999999999999999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        28  (0.00682594); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.95u 0.18s 00:00:01.12 Elapsed: 00:00:00.97
# Mc/sec: 782.41
//
Query:       MMETSP1174-20130828|5969_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1252.20
//
Query:       MMETSP1174-20130828|5970_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 654.67
//
Query:       MMETSP1174-20130828|5974_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1259.90
//
Query:       MMETSP1174-20130828|5979_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   14.5   0.0     0.0019   14.4   0.0    1.0  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
     0.0084   12.2   0.0     0.0084   12.2   0.0    1.0  1  TIGR01075 uvrD: DNA helicase II


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.3e-07    0.0019     662     698 ..       5      43 ..       2      58 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.3e-07
   TIGR01073 662 rktasqakaeaktlswavGdrvshkkfGvGt..vvsvkG 698
                 ++ as++++  +++++++Gdrv+h kf vGt  +++v+ 
  MMETSP1174-20130828|5979_1   5 KAPASSTTKVPENVNFNIGDRVHHPKFEVGTlrITAVNE 43 
                 4555666667799*****************943344443 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.1e-06    0.0084     659     694 ..      11      51 ..       2      57 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-06
   TIGR01075 659 kde.iddagfklGqrvrhakfGeGvi....vdlegsgessr 694
                 +++  ++ +f++G rv+h+kf +G++    v+  g  ++sr
  MMETSP1174-20130828|5979_1  11 TTKvPENVNFNIGDRVHHPKFEVGTLritaVNEVGGSSESR 51 
                 344256789***************85322244445455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|5980_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 973.42
//
Query:       MMETSP1174-20130828|5978_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 919.67
//
Query:       MMETSP1174-20130828|5981_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-07   28.6   0.0    5.1e-07   27.8   0.0    1.4  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-10   5.1e-07       8      56 ..      39      87 ..      36      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.3e-10
   TIGR01557  8 eelhrrFlqAvqklGgedkatPkkIlelmkv.eklTreqvkSHlQkyrlk 56
                +el++    Av  +G   +  Pk    lm + ++lT e++kSHlQk rl+
  MMETSP1174-20130828|5981_1 39 SELDQDIARAVFDIGL-RQSSPKVLMPLMAGnSELTTEHIKSHLQKVRLH 87
                788999999*******.566********976368**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1064.71
//
Query:       MMETSP1174-20130828|5985_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1132.55
//
Query:       MMETSP1174-20130828|5984_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   14.2   0.1      0.002   13.8   0.1    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     5e-07     0.002     741     809 ..     143     214 ..     129     225 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5e-07
   TIGR02917 741 kLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekded...kAakhYqtvvkkapdnavvLNN 809
                 +Lae l as + ++A ++ e+ L++ p d+ +++ lA  +la++  +   +A+  ++++v+++p+n+    N
  MMETSP1174-20130828|5984_1 143 ELAEELMASARFSDAGRLFEHILNHSPSDVLALLKLAAALLANRGLSalpQAIILLRDAVQLEPENIHLVEN 214
                 466666777777777777777777777777777777777776654332225777777777777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1161.50
//
Query:       MMETSP1174-20130828|5983_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.9   0.0       0.39    7.8   0.0    2.5  3  TIGR01762 chlorin-enz: chlorinating enzymes
  ------ inclusion threshold ------
      0.018   12.2   0.0       0.75    6.9   0.0    2.2  2  TIGR02408 ectoine_ThpD: ectoine hydroxylase
      0.021   11.3   0.0       0.03   10.8   0.0    1.1  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.46   6.3e+02       5      35 ..      27      57 ..      25      62 .. 0.82
   2 !    4.4   0.0    0.0031       4.3     127     160 ..     173     206 ..     106     209 .. 0.57
   3 !    7.8   0.0   0.00028      0.39     212     248 ..     229     264 ..     218     270 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.46
   TIGR01762  5 aeekqsfeknGfiGpftlyepeelkelwkei 35
                 + +  f+ nGf+    + + ee+k   + i
  MMETSP1174-20130828|5983_1 27 HKARYLFDLNGFLVLRGVLSEEEIKSANDAI 57
                567788999***9999999999999877665 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0031
   TIGR01762 127 seefggeitvwtaftdatrenGclkvipGthnsl 160
                 ++     +tv + ++da   +G + v+pG+h+s 
  MMETSP1174-20130828|5983_1 173 GQMRNQLLTVCMQLSDAGPGDGGFCVVPGSHKSN 206
                 333345699**********************985 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00028
   TIGR01762 212 emkaGqfiiftsrlmhaslpnsseskirlGyaaryvp 248
                 e+ +G+ iift  ++h++lp +++ + r     r+ p
  MMETSP1174-20130828|5983_1 229 ELAPGDVIIFTEAVLHGTLPWTASHQRR-TVIYRFAP 264
                 6789*****************9887765.45667777 PP

>> TIGR02408  ectoine_ThpD: ectoine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0079        11      17      51 ..      25      59 ..      17      73 .. 0.80
   2 ?    6.9   0.0   0.00055      0.75     145     174 ..     179     208 ..     167     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0079
   TIGR02408 17 laakdlqsyerdGflvlenlvaddevaalraeler 51
                ++ k    ++ +Gflvl ++++++e+   +  ++ 
  MMETSP1174-20130828|5983_1 25 MSHKARYLFDLNGFLVLRGVLSEEEIKSANDAIDA 59
                66667777999***************988877775 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00055
   TIGR02408 145 avsvsialtenyetnGslmvvpGshktfls 174
                  ++v + l++  + +G++ vvpGshk+ ++
  MMETSP1174-20130828|5983_1 179 LLTVCMQLSDAGPGDGGFCVVPGSHKSNYP 208
                 477889999*****************9876 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.2e-05      0.03     256     312 ..     233     290 ..     229     309 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.2e-05
   TIGR00713 256 pDlvvlG.kilggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlka 312
                 +D++++   +l g lP +a   rr ++ r+aP+G+ y  G l   p  v  G++  + 
  MMETSP1174-20130828|5983_1 233 GDVIIFTeAVLHGTLPWTASHQRRTVIYRFAPAGSAYGRGYLPQWPQEVLDGMSDAQL 290
                 577777625899****************************999999988888875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 762.35
//
Query:       MMETSP1174-20130828|5987_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-10   36.4   0.0    7.6e-10   35.6   0.0    1.4  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    8.9e-10   36.5   0.0    0.00011   19.8   0.0    2.0  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      2e-08   31.6   0.0     0.0019   15.4   0.0    2.0  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.4e-08   31.5   0.2    4.8e-08   30.5   0.1    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      2e-07   28.5   0.0    6.1e-07   26.9   0.0    1.7  1  TIGR02415 23BDH: acetoin reductases
      1e-06   26.3   0.0      2e-06   25.3   0.0    1.5  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
  ------ inclusion threshold ------
      0.021   12.3   0.0       0.21    9.1   0.0    2.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.3e-12   7.6e-10     425     601 ..       2     189 ..       1     211 [. 0.78

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.3e-12
   TIGR02632 425 GiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnna..Giavskp..........l.eeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlr 601
                 G+G ++++++++ G hv+l       ++av+ae+ + +G++ + ++  dvtd+ +v+aaf+ +a   G +++vv n+  G    ++             e    +    +d+ + G    area+  + +qg g+ lv  a+  ++         s  k a     + ++    ++g+ v  v  d+v+ 
  MMETSP1174-20130828|5987_1   2 GLGGALSLQFAAAGYHVLLLSRRPTLLDAVKAEVDKAYGEGSSTTMACDVTDDASVRAAFE-IAKGLGKLEVVVFNSapGFPLGPDgtplgfgnfpApAEVDPAQLTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGAT-MSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVAHVIIDGVID 189
                 899*********************************************************6.8899*******9875355544433111111111121344467788899**********************9998886444.45555555555666777777777777777778888888888887775 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.9e-07   0.00011       9      84 ..       2      77 ..       1      80 [. 0.85
   2 !   14.9   0.0   6.1e-06    0.0036     100     187 ..     106     194 ..      99     209 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.9e-07
   TIGR01830  9 giGkaiakklakegakvviterskeekaeelaeelke.ag.vkaaavkldvsdeeevkelveeveeelgeidilvnnA 84
                g+G a+++++a++g++v++ +r + + ++++++e+ + +g ++++++++dv+d+++v++++e + + lg+++++v n 
  MMETSP1174-20130828|5987_1  2 GLGGALSLQFAAAGYHVLLLSR-RPTLLDAVKAEVDKaYGeGSSTTMACDVTDDASVRAAFE-IAKGLGKLEVVVFNS 77
                89******************55.7788999999998744413567899*********99985.7888*******9885 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.1e-06
   TIGR01830 100 wdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvn.avaPGfietdmte 187
                  ++  +v ++g+ +++++++ +m+ + sG  +  ++ ++l G a  a  +  K  l ++ +s+++ +   +++v  ++  G i+++ t+
  MMETSP1174-20130828|5987_1 106 LTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGATMSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVAhVIIDGVIDSPKTR 194
                 566788999***************************************************************99725679999999886 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.2e-06    0.0019      12      86 ..       2      77 ..       1      83 [. 0.84
   2 !   14.4   0.0   6.4e-06    0.0037      98     175 ..     102     179 ..      91     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.2e-06
   TIGR01963 12 GiglaiakelaaaGakvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaaefgsldiLvnnA 86
                G+g a++ ++aaaG +v++ + +   ++a+++e+ +a   g+ ++++ dvt+ ++++    ++a+ +g+l+++v n 
  MMETSP1174-20130828|5987_1  2 GLGGALSLQFAAAGYHVLLLSRRPTLLDAVKAEVDKAygEGSSTTMACDVTDDASVRAAF-EIAKGLGKLEVVVFNS 77
                89999******************8888887777776621456788999*******99665.68899*******9885 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.4e-06
   TIGR01963  98 ptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgita 175
                 ++++  +  +v +++a++  r+a+p+m +qg G  +  +++ +l++ a+ +     K +l  + +++       g+ +
  MMETSP1174-20130828|5987_1 102 DPAQLTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGATMSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHV 179
                 6677788899***************************************99999999999999988887777777764 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   8.2e-11   4.8e-08      14     183 ..       2     186 ..       1     195 [. 0.81

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 8.2e-11
   TIGR03206  14 giggaicrrfaeegakvavldlnaeaaekvaaairekg..gkaeavavditdrasvdaavaaaeealgpvdvlvnna......gwdv....lkpf...lktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvn.vvcpg 183
                 g+gga+ ++fa  g +v +l       + v a++ ++   g++ ++a+d+td asv aa     ++lg  +v+v n+      g d     +++f    + ++a+      + + ga+      ++ mv +++g  +   +  +  g++  a  +  k  l +f +++++ +   g+ v  v+  g
  MMETSP1174-20130828|5987_1   2 GLGGALSLQFAAAGYHVLLLSRRPTLLDAVKAEVDKAYgeGSSTTMACDVTDDASVRAAFEI-AKGLGKLEVVVFNSapgfplGPDGtplgFGNFpapAEVDPAQLTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGATMSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVAhVIIDG 186
                 89*****************99998888999988877651256789************99876.579*******98854544442232333356663336899********************************98888788888899999******************99988888875244555 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     1e-09   6.1e-07      11     176 ..       2     180 ..       1     220 [. 0.82

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1e-09
   TIGR02415  11 GiGkaiaerLakdGfavavadlneetaketakelkek..gtkavavkldvsdkseveeaveqaveklGeldvlvnna.............GvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvn 176
                 G+G a++ ++a+ G++v +   ++  + +++ e++++  ++ +  +  dv+d ++v +a e a + lG+l+v+v n+             G +   + +e+++ +l + ++v v g +   + a   +  ++++  ++  a+  + +g ++ +  s  kfa+r++ q+ ++   + g+ v 
  MMETSP1174-20130828|5987_1   2 GLGGALSLQFAAAGYHVLLLSRRPTLLDAVKAEVDKAygEGSSTTMACDVTDDASVRAAFEIA-KGLGKLEVVVFNSapgfplgpdgtplGFGNFPAPAEVDPAQLTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGAT-MSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVA 180
                 89**********************999999999998732345678999********9999876.78********8864544444443333455666679******************9999999999988887666666555.5789***********************99999888775 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.3e-09     2e-06      73     202 ..      50     191 ..      28     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.3e-09
   TIGR03971  73 dvrkleelravveegveefGrldvvvana.............GvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsih.Ptsvdta 202
                 dv + + +ra+ e   + +G+l+vvv n+             G  ++ +  e+++ q  t  dv + G+ ++ + ++P+++ ++  G+ ++ +++ +l++  + a  +  k+ l ++ +++++   + g+ v  +     +d +
  MMETSP1174-20130828|5987_1  50 DVTDDASVRAAFEI-AKGLGKLEVVVFNSapgfplgpdgtplGFGNFPAPAEVDPAQLTTAFDVGVSGAVRCAREAIPTMVAQG-SGTFLVSGATMSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVAHVIiDGVIDSP 191
                 55555555555443.3456666666665433333333322224455667789*******************************9.67778889999**********************************99865404444555 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00035      0.21      11     183 ..       2     188 ..       1     196 [. 0.68

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00035
   TIGR01829  11 GiGtaickrlakdGykvvanv.apneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnna..G..itrdav...f......kkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvn.viaPGyi 183
                 G+G a++ ++a++Gy+v+    +p    a + + +k+  +   + +  dv++  + +aa  ++ + lG+++v+v n+  G  +  d +   f      + ++ +q +   d+ +++    +r+ i +m+ +g G  +   +   l+G +  a  s  k  l  f ++++q    +gv v  vi  G i
  MMETSP1174-20130828|5987_1   2 GLGGALSLQFAAAGYHVLLLSrRPTLLDAVKAEVDKAYGEGSSTTMACDVTDDASVRAA-FEIAKGLGKLEVVVFNSapGfpLGPDGTplgFgnfpapAEVDPAQLTTAFDVGVSGAVRCAREAIPTMVAQGSGTFLVSGATMSLRGAATFACMSPIKFALRSFCQSMSQAYHPMGVHVAhVIIDGVI 188
                 89999999999999999765404566666666666777777788889999986655555.57999999999999665242223444432222111222456677777777777777778888888888888888888777788888888888888888888888888888888888877524555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1174-20130828|5988_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1174-20130828|5990_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 764.44
//
Query:       MMETSP1174-20130828|5992_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   13.7   5.9     0.0069   13.5   3.7    1.3  1  TIGR04098 biosyn_clust_1: biosynthesis cluster domain
  ------ inclusion threshold ------
        3.9    3.9  12.2        4.4    3.7   8.4    1.1  1  TIGR00437 feoB: ferrous iron transport protein B
        4.2    3.2  14.1        4.7    3.1   9.8    1.0  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR04098  biosyn_clust_1: biosynthesis cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   3.7   5.1e-06    0.0069      87     182 ..      39     130 ..      29     131 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.1e-06
   TIGR04098  87 vlsrhrlsvagresaevellsrfvrrskegsNrslarvspegfrgaalpslpaqaspraalakarragafeahpglavreakelaaleyevcpsqD 182
                 ++++ +  ++ +++ae+++l+++v+++k+++ + la+v    ++++al++++a+a +++  ++++++ + ++ +++  ++++++++l+ ++ +++D
  MMETSP1174-20130828|5992_1  39 HATEMEA-KENQKRAEIKKLNAWVEKEKKEKLHALAKVNQ--LKQQALRDQSARAVAAT-ESERVEKSKAKRAMDALTKAREGSEELRTQLGVTKD 130
                 4444443.456777889*********************94..56677766666444444.444444444455566666777777777777766665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   8.4    0.0032       4.4     142     241 ..       7     106 ..       2     134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0032
   TIGR00437 142 gieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlvek 241
                  i el++a  + +  k+  kk++a++i    ++++e++ k ++++ ++kk ++ +e+ ++e+  + +k+++  ++ ++ +s  ++ ate  + ek ++++
  MMETSP1174-20130828|5992_1   7 MIAELEDARLQIEDAKRNAKKMEAQRIEDSRRHATEMEAKENQKRAEIKKLNAWVEKEKKEKLHALAKVNQLKQQALRDQSARAVAATESERVEKSKAKR 106
                 4566666665566778888888899888888888888888888888999999999999999999999999999999999999888887776665444443 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   9.8    0.0034       4.7     768     891 ..       5     133 ..       1     143 [. 0.63

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0034
   TIGR03683 768 krffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvvvlvsekegkvkvvvssgekv......kvkagelvkeiakllggkggGkeklaqgkvedkekvd 891
                 k++++e++++r +ie  k++  +++++++e++ ++  +++   ++  a+ ++l++ +ek ++++  +  ++++ +++ +  +s++ v      +v+ ++  +++ + l    +G+e+l +  + +k++++
  MMETSP1174-20130828|5992_1   5 KKMIAELEDARLQIEDAKRNAKKMEAQRIEDSRRHATEMEAKENQKRAEIKKLNAWVEKEKKEKLHALAKVNQLKQQALRDQSARAVaateseRVEKSKAKRAM-DALTKAREGSEELRTQLGVTKDQLK 133
                 78999*********************999999999999999999999999999999988877776666555554443333333333332222244444444444.4444444555555433333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       697  (0.169917); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 575.95
//
Query:       MMETSP1174-20130828|5995_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 664.66
//
Query:       MMETSP1174-20130828|5998_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|5996_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 796.65
//
Query:       MMETSP1174-20130828|5997_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|6001_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-90  301.8   0.0    2.6e-90  301.0   0.0    1.3  1  TIGR01891 amidohydrolases: amidohydrolase
    4.9e-08   30.1   0.9    4.9e-08   30.1   0.6    1.7  2  TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family
    1.7e-07   28.4   0.0    3.1e-07   27.5   0.0    1.3  1  TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase
    1.3e-06   25.7   0.1      3e-06   24.5   0.1    1.6  1  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
    3.2e-05   21.0   0.8    9.1e-05   19.5   0.6    1.7  1  TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
    0.00012   18.9   0.1    0.00019   18.3   0.1    1.2  1  TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase
  ------ inclusion threshold ------
      0.019   11.5   0.0       0.03   10.8   0.0    1.3  1  TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase


Domain annotation for each model (and alignments):
>> TIGR01891  amidohydrolases: amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0   0.0   4.5e-93   2.6e-90       2     354 ..      54     446 ..      53     454 .. 0.90

  Alignments for each domain:
  == domain 1    score: 301.0 bits;  conditional E-value: 4.5e-93
   TIGR01891   2 tdirrklhehPElsfeEfktaekvaeaLesl.........................gievergvgka...tgvvatigqg.kpgpviAlradmDALpleeqte.lpfkstnpgvmHaCGHdlhtaillgaaillkkladq.lleGtvrlifqpaEEgg........lsGatkmieegvlddVdavlglHvepsapagtvrlrsgtimaaadkfevtikGkgaHaakPhlgrdaldaaaqlvtalqaivsrsiepsrkavvsvgvieaGtapNVipdkAslkgtvRaleeevlkqieerveeilegaaamygakvelrldkaalpavtndealvqllkevakevlgseevaeepevlaGseDfalvsqk....vpgaqfflgvsaegtelsaplhqp 354
                 t++r++lh+hPE +feE +t ++++e+L                             i+ +++  ++       a+  ++ +p +++A+rad+DAL ++e++  lp++s n+gv H CGHd+h+a + +aa l++  ad+  ++ +vr++fqpaEEgg        ++Ga  mi+eg+l++V++v+glH++p++p+g+vr+ +g+ima++ +f +t+ G+g+Ha++Ph ++d++   a lv al++ivsrs++ s++ v+sv+ i+aG+a NVipdk+++ gt+R++++e  k +e+rv+e++ g +a++ga +++ + ++ +p v+n+e    ++++vak+vlg++ v ++  +l+G+eDf++++ +    +pga+f++g+ +e+    a  h+p
  MMETSP1174-20130828|6001_1  54 TKLRHELHQHPEPGFEETRTQARLRETLVGFcgldeahiqacartglvadiigqgpQINGDNPNPGTaakD--GAEPACSaPPVSCVAIRADIDALRMTEENFkLPYRSVNQGVAHMCGHDGHMASMVAAAALINARADRiPAHKRVRILFQPAEEGGffepgskqQGGALPMIKEGCLNGVQEVYGLHNWPTIPVGEVRVCPGPIMAQSTEFRITVVGRGGHASTPHATIDPVACSAALVSALNTIVSRSVPSSDRVVLSVTNIHAGEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEVALGCCAAFGARAQVSIVTK-YPPVINHEVPAAIVQRVAKRVLGDSAVSADGTPLLGGEDFSYFLREdvggLPGAFFLVGTREEEYTQLASIHTP 446
                 789*************************9988999887777777777777777755333333333334222..345555405556************9887655*************************************9999********************99*********************************************************************************************************************************************************8.9******************************************98655569********988776655777776 PP

>> TIGR01879  hydantase: amidase, hydantoinase/carbamoylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.39   2.3e+02     320     366 ..     133     185 ..     127     196 .. 0.66
   2 !   30.1   0.6   8.3e-11   4.9e-08     208     336 ..     262     389 ..     243     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.39
   TIGR01879 320 ePvlls..eelvdalkeackeleldarvlvsGa....ghDaailaeivpigmi 366
                 +Pv +   +  +dal+ + ++ +l++r +  G     ghD+ + + ++  ++i
  MMETSP1174-20130828|6001_1 133 PPVSCVaiRADIDALRMTEENFKLPYRSVNQGVahmcGHDGHMASMVAAAALI 185
                 56665411234788888899999999999999622225676665555555555 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 8.3e-11
   TIGR01879 208 swlkvklaGeaehaGttPmslRrDalvaaakiikeveekakr...mtaptvgtvGkveaaPngvnviPekveftlDlRdldaevlskltkkleeeikaiskerdveleierlmekePvllseelvdalkeac 336
                 + ++++++G  +ha t   ++  D+++  a ++ + ++  +r    ++  v+ v +++a  ++ nviP+kve+   +R  d+e  + +++++ e +   +   + ++++  + + +Pv+ +e + +a+ +++
  MMETSP1174-20130828|6001_1 262 TEFRITVVGRGGHASTPHATI--DPVACSAALVSALNTIVSRsvpSSDRVVLSVTNIHA-GEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEVALGCCAAFGARAQVSIVTKYPPVINHE-VPAAIVQRV 389
                 5689**********8766554..99*9999999999998888554577899******98.589******************************************************97655.555554443 PP

>> TIGR01246  dapE_proteo: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.3e-10   3.1e-07     177     271 ..     261     353 ..     259     367 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 5.3e-10
   TIGR01246 177 sitgklkikGiqGhvaYPhkaenPvhkavpvlkeliaiklDeGneffppsslqianieagtgasnviPgelkvkfnlrfssevseeelkskveki 271
                 s +++++++G  Gh + Ph +++Pv + + ++ +l +i       +     l+++ni+ag+ a nviP +++v   +r   +   + ++++v+++
  MMETSP1174-20130828|6001_1 261 STEFRITVVGRGGHASTPHATIDPVACSAALVSALNTIVS-RSVPSSDRVVLSVTNIHAGE-ALNVIPDKVEVGGTIRTFDDECFKVVERRVHEV 353
                 667899*********************9998888877754.44455567789*******96.689***************************987 PP

>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   5.2e-09     3e-06     178     276 ..     261     354 ..     170     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.2e-09
   TIGR01910 178 siwfkvkvkGkqaHaslpeeGvnAieklakliteleeleeeknakkdeeeplkvtinvgvikggdkvnsvpdraelevrvriiPeenkeevkkeveslv 276
                 s +f+++v G+  Has+p+ +++ +  +a l+ +l+ ++++ +         +v + v+ i  g+  n++pd++e+ +++r+  +e  + v+  v+++ 
  MMETSP1174-20130828|6001_1 261 STEFRITVVGRGGHASTPHATIDPVACSAALVSALNTIVSRSVPSS-----DRVVLSVTNIHAGEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEVA 354
                 679************************************9998886.....7999**************************988877777777776665 PP

>> TIGR01892  AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6   1.6e-07   9.1e-05     170     311 ..     262     397 ..     141     402 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.6e-07
   TIGR01892 170 asakvtvrGreghssrpdrGvsaielaakllarlvaladklkredleeaFtppyatlniGtvkGGkavniiaaaCelvlelRpipGmdpeellallekiaeevkekapgfevkveelsatpal.ele.edaelvalleklaGaa 311
                   +++tv Gr gh+s+p+  ++ +   a l++ l +    ++ + +          l + +++ G+a n+i+++ e+   +R+      + +   ++++a      a g  ++v  ++ +p + + e + a +++++++++G++
  MMETSP1174-20130828|6001_1 262 TEFRITVVGRGGHASTPHATIDPVACSAALVSALNT----IVSRSVP---SSDRVVLSVTNIHAGEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEVALGC-CAAFGARAQVSIVTKYPPViNHEvPAAIVQRVAKRVLGDS 397
                 4579***************99998888776665543....4433333...3455679999**************************99999999999999977.5667777777777777654255524566677888888884 PP

>> TIGR01900  dapE-gram_pos: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.3e-07   0.00019     167     266 ..     263     359 ..     253     399 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.3e-07
   TIGR01900 167 rvevtvkGraaHsaRaWlGeNAihkaaevlerlaayearevevdGlkyreglnavlieggvakNviPdeaevnvnyRfAPdrsleqakaevrevlegaev 266
                  +++tv Gr  H++ +      +   a+++++l+++  r+v       r +l+++ i++g a NviPd++ev    R   d   + ++++v+ev  g+ +
  MMETSP1174-20130828|6001_1 263 EFRITVVGRGGHASTPHATIDPVACSAALVSALNTIVSRSVPSS---DRVVLSVTNIHAGEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEVALGCCA 359
                 6889999*****************************99998654...4889*********************9999999999999999999998865554 PP

>> TIGR01880  Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.1e-05      0.03     243     293 ..     303     353 ..     263     379 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.1e-05
   TIGR01880 243 laegdvvsvnltklkaGvqsnviPseleagfdirlapsvdfealekrlaee 293
                 +  +d v + +t ++aG + nviP+++e+g  ir   +  f+++e+r++e 
  MMETSP1174-20130828|6001_1 303 VPSSDRVVLSVTNIHAGEALNVIPDKVEVGGTIRTFDDECFKVVERRVHEV 353
                 5678889999*************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.53
# Mc/sec: 1237.71
//
Query:       MMETSP1174-20130828|6004_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-20   70.0   0.3    6.8e-20   69.4   0.2    1.2  1  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
     0.0028   14.8   0.0     0.0041   14.2   0.0    1.2  1  TIGR04053 sam_11: radical SAM protein, BA_1875 family


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.2   3.3e-23   6.8e-20      25     147 ..      58     180 ..      50     189 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 3.3e-23
   TIGR03665  25 ektkvkleidseegevkveeeeedplkvlkarevvkAigrGfspekAlkLldddkvLevidlkelaksknelkrikgriIGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareAiem 147
                 +k+ ++l++ + + +vk +++++dp+ +lkar+++k ++r   + +Alk+l+dd+  +vi++  +  +k+++ r + ri+G +G t k +e lt+ ++ v+g+tvs +G+i+ +k +r+ +e 
  MMETSP1174-20130828|6004_1  58 QKIACELDLIEGSMTVKTTRKTNDPYIILKARDLIKLLARSIPVLQALKILEDDMHCDVIKIGGMVGNKERFVRRRQRILGPDGATLKALELLTECYVLVQGNTVSTMGTIKGIKQVRKVVED 180
                 4667888888888888888***************************************************************************************************99985 PP

>> TIGR04053  sam_11: radical SAM protein, BA_1875 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-06    0.0041     137     305 ..     142     315 ..     128     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-06
   TIGR04053 137 ktlkairallelglklqintvvtkenveelpevakllkdlgvklwevFf..lvpvGRgkele.alspeeaedvlkflvd..vsekvalevktteaplyRRvalqrkalekkekaklgelyeqlteklvellgepkkeakrralgvrdGkGivFvshkGdvyPsGflPlklGnvr 305
                 +tlka++ l+e+ + +q ntv t  +++ +++v+k+++d   +++ v+   ++ + R  +++ al  e++++ l  +++  v +k +++v+ t+ ++y      ++ ++ + + ++ge+  + t++++++ +e++++a++++ + ++ +  ++v  k +  Ps     ++Gn +
  MMETSP1174-20130828|6004_1 142 ATLKALELLTECYVLVQGNTVSTMGTIKGIKQVRKVVEDCMNNIHPVYNikILMIKRELAKDpALAGENWDRFLPKFAKktVDRKKPFKVRDTAKRTYTPFPPAQTPSKVDLQLESGEYFLSETQRKARRRSEKQADAAATSQARKKEREQIYVPPKEERLPSSAAEAEAGNGT 315
                 69*************************************9999988875224566776655426888899988765543124567899*****999999999888888888888888888888888888888778877777777777777788877777777777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1255.51
//
Query:       MMETSP1174-20130828|6017_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   16.4  19.3    0.00036   16.1  13.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0042   12.7  22.0      0.005   12.4  15.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.029   12.1  11.0     0.0087   13.8   4.3    2.0  2  TIGR03513 GldL_gliding: gliding motility-associated protein GldL
        1.2    5.8  16.8          2    5.1  11.6    1.3  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
        2.1    4.4  13.7        2.6    4.1   9.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  13.3   4.4e-07   0.00036     675     852 ..      21     195 ..       8     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.4e-07
   TIGR02169 675 eklerlrerleeLereleslqselrriekrldel.ssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkke 852
                  ++ +l  +l+   +    + ++l+++ ++++++ ++++++ +  +++++k+ ++++++  ++++ ++++++ l++   ++ ++ + +++ + + ++++ +++  ++a++d   +++e++i+ei+e++ k++e  ++++ ++++ + e+n+ e   e+  ++ +++++  e++e+ +++
  MMETSP1174-20130828|6017_1  21 PQMTQLDTQLKLVADISTGIGQQLSEQLQAAEQVpREEAQRLRVTHSKLSKDYQAVQRKYIAVRNTAQQKRAALEKSTANRPAASR-QEQEAVRFADQRLRVQMQEQAINDAIMREREDEIKEIHENVAKVNEIFKDLNDIVQDQQTEINSVE---EMITKSHAHAKSGLEQVEKANEM 195
                 45556666666666666667777777777666653567778888889999999999999999999999999999887777765544.344466889999999999999***99999***********************99999999999999...77777777777777776665554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4  15.2   6.1e-06     0.005     255     853 ..      45     193 ..       5     206 .. 0.35

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.1e-06
   TIGR02168 255 leeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeelee....aeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieele 853
                  e+l+a+ +   ee ++lr                                                                                                                                                                                                                                                                                                                                                                                                                                                                        +s+l+k++++++++  +++++++q++++le+ +++r +++++ +e    a+++l  + +e++ ++a +++ ++e+k++ e+++++++ +++l++ +++++++++s+e+ i + + +++   eq e+++
  MMETSP1174-20130828|6017_1  45 SEQLQAAEQVPREEAQRLRV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THSKLSKDYQAVQRKYIAVRNTAQQKRAALEKSTANRPAASRQEQEavrfADQRLRVQMQEQAINDAIMREREDEIKEIHENVAKVNEIFKDLNDIVQDQQTEINSVEEMITKSHAHAKSGLEQVEKAN 193
                 12222222222222222222......................................................................................................................................................................................................................................................................................................................................................................................................................................................................223333333333333322222222222222222222222222211100002222222333333333333333333333333333333333333333333333333333333333333333333333332 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.13   1.1e+02     136     233 ..      38      73 ..       3      87 .. 0.42
   2 ?   13.8   4.3   1.1e-05    0.0087      68     153 ..      96     190 ..      91     200 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.13
   TIGR03513 136 egaaktlakmtdsyakqkedqeglrldaqkYieqleklaknleaLNeiYeiqlkgaskqikalneiyaglasirdnydda.aedseslkeeleklaknl 233
                 +g                                                               i ++l++  +  ++   e++++l+    kl+k+ 
  MMETSP1174-20130828|6017_1  38 TG---------------------------------------------------------------IGQQLSEQLQAAEQVpREEAQRLRVTHSKLSKDY 73 
                 22...............................................................2222332222222221233444444444444443 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.1e-05
   TIGR03513  68 knkrkkeaaaaeepeaarllsqkLdamlkeakvdaellaslgngik....neeki....sdlseai.dklaeatealegaaktlakmtdsyakqk 153
                 k ++ + aa  +e+ea+r + q+L  +++e+ ++  ++    + ik    n+ k+    +dl + + d+ +e  +  e ++k+ a+    +++ +
  MMETSP1174-20130828|6017_1  96 KSTANRPAASRQEQEAVRFADQRLRVQMQEQAINDAIMREREDEIKeiheNVAKVneifKDLNDIVqDQQTEINSVEEMITKSHAHAKSGLEQVE 190
                 55688999999**********************************96666333331111344444313445555555555555555555444444 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.6    0.0024         2     104     268 ..      22     172 ..       7     200 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0024
   TIGR03794 104 kLtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaL.sqevakqrqlls.rklaklkrarillqqarkeqekrdeadkae.aeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnlnteivsqhdGrvlevs 268
                 ++tqL+ ql+ v+       ++   +++ ++++ +e +++lr ++  L + ++a qr+ +  r+ a+ kra++    a+++ ++r+e+++ + a+ +l ++ +e+ +++ ++                  + e +ike++e+++++++ +++   iv  ++  + +v+
  MMETSP1174-20130828|6017_1  22 QMTQLDTQLKLVADISTGIGQQLSEQLQAAEQVPREEAQRLRVTHSKLsKDYQAVQRKYIAvRNTAQQKRAALEKSTANRPAASRQEQEAVRfADQRLRVQMQEQAINDAIM-----------------REREDEIKEIHENVAKVNEIFKDLNDIVQDQQTEINSVE 172
                 6777777777777777766666677777777777777777777777773334444444333144444455555555555555444444444313334555555555544444.................444444444444444444444444444444444443332 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.5    0.0031       2.6     151     337 ..       9     208 ..       2     221 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0031
   TIGR00934 151 rtktllereledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedly.rsimmlqekheatakirdk........iseanslaaesdeessesrriqekikrrlstssiekns..........qqnltrlaktksfddskavr 337
                 r +  + +el++ ++t+  t+ +      +   ++++e+l   e v r+e ++   ++++ +++ + ++ ++i  +++ ++k+   +++++    a+r+e++ + ++d   r +m+ q++++a  ++r+         +      a+ ++  +    ++q++   + s  ++ ++s           ++ + ++k  +f+d  ++r
  MMETSP1174-20130828|6017_1   9 RRMPRNPKELNSPQMTQLDTQLKLVADISTGIGQQLSEQLQAAEQVPREEAQRLRVTHSKLSKDYQAVQRKYIAVRNTAQQKRAALEKSTANRPAASRQEQEAVRFADQRlRVQMQEQAINDAIMREREDeikeihenV------AKVNEIFKDLNDIVQDQQTEINSVEEMITKShahaksgleqVEKANEMKKGAAFPDTDTTR 208
                 44555678888888998888888778888888899999999999999*9999999999999998778888888855555555555555555566677777777777776525566667777777766666643322221......2223333333333444433333333333333333333333256677888888888755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       607  (0.147977); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 813.93
//
Query:       MMETSP1174-20130828|6016_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|6019_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|6014_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 1823.29
//
Query:       MMETSP1174-20130828|6020_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1174-20130828|6022_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-52  175.9   0.0    3.5e-52  175.5   0.0    1.1  1  TIGR01266 fum_ac_acetase: fumarylacetoacetase


Domain annotation for each model (and alignments):
>> TIGR01266  fum_ac_acetase: fumarylacetoacetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   8.6e-56   3.5e-52     271     419 ..       1     151 [.       1     152 [. 0.95

  Alignments for each domain:
  == domain 1    score: 175.5 bits;  conditional E-value: 8.6e-56
   TIGR01266 271 ePfrvaq.lePeqdpkplpylredradtafdielevslkteGlaeaavisrsnakslywtlkqqlahhsvnGcnlraGdllgsGtisGkeeeafGsllelsakGkkevkla.dgetrkfledGdevilrgvckkeGvr.vGfGecaGkvlpa 419
                 ePfr ++ +  ++dp+pl y+r+  +  ++d++l v +++ G+a ++ i++sn+ +lywt+kqql hhsv+Gcn+++GdllgsGtisG+++++fGs+lels+kG++e++l+  g++rkfl+dGd+v+++gv++k G   vGfG c G vlpa
  MMETSP1174-20130828|6022_1   1 EPFRCPTsAGVQDDPEPLEYIRDP-HYGSYDVKLTVGVQAPGMASPEPITNSNFANLYWTMKQQLVHHSVTGCNMQPGDLLGSGTISGADQDSFGSMLELSWKGSREISLGtTGQVRKFLKDGDKVVMTGVARKAGFGqVGFGVCEGVVLPA 151
                 68888875667889********99.899**********************************************************************************83589*********************977***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1488.29
//
Query:       MMETSP1174-20130828|6023_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|6026_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|6024_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 544.99
//
Query:       MMETSP1174-20130828|6029_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1139.91
//
Query:       MMETSP1174-20130828|6035_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 275.62
//
Query:       MMETSP1174-20130828|6036_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 128.11
//
Query:       MMETSP1174-20130828|6038_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1180.36
//
Query:       MMETSP1174-20130828|6034_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   12.1  10.6     0.0072   11.8   7.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   7.3   1.8e-06    0.0072     756     930 ..      55     233 ..      27     243 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-06
   TIGR02169 756 ekkeelkeleaeieeleeklaklkealedlea..elseekieei.eeelekleeevsriearleeieaelnklelekelleeeiqelqee.ieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakleal 930
                 +  +e k+ ++ + +  ++++kl  +l    +    ++e++ +i ++ele+ + ++s  +++l+ei a  + +++++++  +e++el+++ + +l + ++++ ++ + ++ + ++ +  ++e+   ++eL+     L+    +++ e++ +++  ++le+++++  +r++    kl +l
  MMETSP1174-20130828|6034_1  55 ATSSEFKDCRKLLGKELKSAEKLLRDLTMTVDfvVNDREQFGHIdDHELEERKSYISTSRQKLNEIKAFYQGESVKRKMIADERKELESKpMSNLGATNSDMMENTHFIQDQQAQAQMIIKEQDEGLEELSMGVDRLNDMAININDEIKVQNRLLNDLETDLDDTTERMNVVMGKLGKL 233
                 44445555544444444444444444333222111234444444145678888888888888888888888888777777777777765536778888888888888888888888888888888888888888888888888888888888888888888888888887766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       441  (0.107509); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.26s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1192.45
//
Query:       MMETSP1174-20130828|6043_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|6047_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 916.38
//
Query:       MMETSP1174-20130828|6054_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 195.11
//
Query:       MMETSP1174-20130828|6051_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|6048_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  134.1   0.1    5.9e-30  102.2   0.0    2.2  2  TIGR00962 atpA: ATP synthase F1, alpha subunit
    1.1e-38  131.0   0.2    4.4e-30  102.7   0.0    2.2  2  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    4.4e-23   79.6   0.5    2.5e-17   60.6   0.1    2.3  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    8.4e-20   68.7   0.5      3e-15   53.7   0.1    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.8e-18   64.3   0.3    1.1e-13   48.5   0.1    2.2  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    1.4e-17   61.3   0.4    1.5e-13   48.0   0.1    2.3  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    2.9e-15   54.0   0.2    2.2e-12   44.5   0.0    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    8.2e-08   28.9   0.0     0.0001   18.7   0.0    2.2  2  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    1.2e-07   28.7   0.0    2.6e-06   24.3   0.0    2.5  2  TIGR01039 atpD: ATP synthase F1, beta subunit
    7.4e-06   22.7   0.1     0.0001   19.0   0.0    2.3  2  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta


Domain annotation for each model (and alignments):
>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   1.4e-32   5.9e-30      96     322 ..     141     368 ..      59     375 .. 0.89
   2 !   29.8   0.0   1.3e-10   5.5e-08     334     449 ..     441     563 ..     436     624 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 1.4e-32
   TIGR00962  96 vpvGdallGrvvnalGepidGkGdieseefsav..ekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqt.GktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGrea..yPGdv..fylhsrlleraaklsdekGaGsltalPiiet 322
                 + +Gd+ lGrv++ +G p+dG+   + +e+ +v   + a g i+   +++ l++G++ i+al+P+G Gq  l+iGd     k  +a+d + +qkd    vkcvy  +       a+v e le++ga+++t++v a +  + ++q  +  +++a ae frdkg+dal+i dd+s   + + + sl +    G e     Gd     ++s +l+r+ +ls+  G+Gslt l +++ 
  MMETSP1174-20130828|6048_1 141 TGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVfgTQGAEGSID--QITRGLDSGVTVINALTPMGLGQSLLVIGDDAMeHKRNLALDVVQQQKD--TGVKCVYACLD--GGVAAEVREDLERRGAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDDFSAIFKFWDTTSLGMLDLFGNERvdIGGDSeqRGFYSSFLQRSGQLSKPFGGGSLTMLVLVDE 368
                 679********************999999999933355667666..6899*************************98652799************..56*****9985..456689********************99999*******************************************99998887752267997333478**********************99864 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.3e-10
   TIGR00962 334 nvisitdGqiflesdlfnsGirPainvGlsvsrvG...........gaaqikaikkvaGslrlelaqyreleafsqfasdldeatkkqlerGkrlvellkqeqskPlsveeqvvilyavtkgylddi 449
                  +is++dG   l+ ++  +G++P ++   s++rvG           ga+   a++kv+  lrl+la  ++l   s+ as +d  + + l+        + q+  +P s+ +qv++l a++kg+ld+i
  MMETSP1174-20130828|6048_1 441 QIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRVGigtkgsskrasGASHAPALRKVTPRLRLDLAYLQDLRFSSETASAIDVQAVRALA----FKAAVSQDPGSPRSLGDQVLLLLAAEKGFLDHI 563
                 59***********************9999999997655555544445677889******************9888888888876666665....566789*************************98 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.1e-32   4.4e-30      97     320 ..     141     367 ..     114     374 .. 0.90
   2 !   26.2   0.0   1.6e-09   6.7e-07     333     462 ..     441     581 ..     435     615 .. 0.78

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 1.1e-32
   TIGR03324  97 vpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrq.tGktaiaidtilnqkdknvlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGre..afpGdi..fyvhsrllersthlrkerGGGsltalpiie 320
                 + +Gde lGrv+d +G pldg+   + ++ lp+     +      +t  l +G+ v++al p+G Gq  l++Gd     k  +a+d + +qkd+ v cvy ++       a+v ++l ++ga+++t+ v +  ++  G+q  +  +a + ae f ++G d l++ dd++   + +   sl +    G e     Gd      +s +l+rs  l k  GGGslt l +++
  MMETSP1174-20130828|6048_1 141 TGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAmEHKRNLALDVVQQQKDTGVKCVYACLDG--GVAAEVREDLERRGAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDDFSAIFKFWDTTSLGMLDLFGNErvDIGGDSeqRGFYSSFLQRSGQLSKPFGGGSLTMLVLVD 367
                 579******************************999888888999****************************87615799*******************88754..34468889*************************9999999999*************************99999888777766215679863234789********************99886 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.6e-09
   TIGR03324 333 nlisitdGqiylspelfelGvlpavdvGksvsrvG...........GkaqlaayravaGdlklayaqfeeleafarfgarldeetrkvierGrrirailkqtessplsvaeqivillalseelfdavel....dklseaekaisa 462
                 ++is++dG   ls ++  +G+ p +d  +s++rvG           G +  +a r+v+ +l+l  a +++l   +  ++ +d ++ +++      +a + q+  sp+s+ +q+++lla +++ +d +      +++++ +  + +
  MMETSP1174-20130828|6048_1 441 QIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRVGigtkgsskrasGASHAPALRKVTPRLRLDLAYLQDLRFSSETASAIDVQAVRALA----FKAAVSQDPGSPRSLGDQVLLLLAAEKGFLDHIFKplggERVATSQDMVAQ 581
                 58*******************************98655533333334455679******************8888888888888877775....789999*********************999987431111444444444444 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   6.2e-20   2.5e-17      72     235 ..     141     305 ..     111     310 .. 0.87
   2 !   16.9   0.0   1.2e-06   0.00048     303     338 ..     440     475 ..     438     509 .. 0.89

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 6.2e-20
   TIGR03496  72 lpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvG..KsvLlgmlarateadvvvv..aLiGERgREvkefieknLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDS 235
                   +g+e lGrv+d +g pldg++a + +e++++  ++ +  + ++i++ ld Gv +inal+++g Gq l ++    +   +   l ++ ++++  v+ v   L G  + Ev+e +e+     +++++ +v+a++d +  +++ ++a+a+a ae frd+g+d L+++D 
  MMETSP1174-20130828|6048_1 141 TGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEhkRNLALDVVQQQKDTGVKCVyaCLDGGVAAEVREDLERR---GAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDD 305
                 56899*******************************************************************9998862134557777777766665553378899999**9999875...5689*****************************************96 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.2e-06
   TIGR03496 303 daaraiLDGHivLsRelaeaghyPaidieaSiSRvm 338
                 d++ ++ DGH vLs+++ ++g+ P++d  +S+ Rv 
  MMETSP1174-20130828|6048_1 440 DQIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRVG 475
                 788999****************************95 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   7.4e-18     3e-15      80     245 ..     142     306 ..     123     313 .. 0.83
   2 !   12.9   0.0   1.7e-05     0.007     310     345 ..     440     475 ..     436     499 .. 0.86

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 7.4e-18
   TIGR02546  80 kvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGv.GkstLlsmiarg.akadv.ivl.aLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsl 245
                  +g+e LGrvld +G pldg+ + + +e  + p++++     s  +i++ l  Gv +i++l  +g Gq + + ++  +  k  L   ++++ +++ v +v   L G    evre +e++    +++++ lv ++sd +   ++ +  +a+a ae fRd+g++ l++lD  
  MMETSP1174-20130828|6048_1 142 GIGDERLGRVLDYVGLPLDGQAAPSCTE--TLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMeHKRNLALDVVQQqKDTGVkCVYaCLDGGVAAEVREDLERR---GAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDDF 306
                 689******************7766664..57*************************************9988865541677776666655255555244425789999*****99954...4799**********99998888888888889**************976 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.7e-05
   TIGR02546 310 devrsilDGhivLsrklaernhyPaiDvlaslsRvl 345
                 d++ s+ DGh vLs+k+ +++  P++D  +sl Rv 
  MMETSP1174-20130828|6048_1 440 DQIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRVG 475
                 7899******************************94 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   2.8e-16   1.1e-13      96     261 ..     139     305 ..     130     313 .. 0.84
   2 !   13.6   0.0   1.1e-05    0.0044     327     361 ..     440     474 ..     437     490 .. 0.92

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 2.8e-16
   TIGR01026  96 lsvkvgegllGrvldalGkplDekgkaldnveke.litapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvG.kstL.lGmiarateadvnvi..aliGerGrevkefiekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDs 261
                   + +g++ lGrvld +G plD+++ a + +e+  ++ ++ +  +  +i++ l+ Gv +i+al ++g Gq l +     +  k  L l ++ ++++  v+ +   l G    ev+e +e+      ++++ +v+a+sD +  +++ + ++a+a ae frd+G+d l+++D 
  MMETSP1174-20130828|6048_1 139 FLTGIGDERLGRVLDYVGLPLDGQA-APSCTETLpVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEhKRNLaLDVVQQQKDTGVKCVyaCLDGGVAAEVREDLERR---GAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDD 305
                 556799******************8.556666656************************************98887766642555547888899999999773346688888999888864...5689************99999999999******************96 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.1e-05
   TIGR01026 327 DevrailDGhivLsralaerglyPaidvlasisrl 361
                 D++ ++ DGh vLs+++  +g+ P++d  +s+ r+
  MMETSP1174-20130828|6048_1 440 DQIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRV 474
                 8999*****************************98 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1   3.7e-16   1.5e-13      75     238 ..     142     305 ..     123     314 .. 0.82
   2 !   11.2   0.0   5.4e-05     0.022     306     345 ..     440     479 ..     438     549 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.7e-16
   TIGR03498  75 rpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaDvvvi....alvGeRGRevrefleddlgeeglkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDs 238
                  + ++ lGRv+d +g p+Dg+ a ++ +++ pv  ++ a  s  ++++ l+ Gv vi++++++++Gq l +     +     l++ + +++ D+ v      l G    evre le       ++++ +v+a sD +  ++  +  +a+a ae fRd+g+d l++lD 
  MMETSP1174-20130828|6048_1 142 GIGDERLGRVLDYVGLPLDGQ-AAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEHKRNLALDVVQQQKDTGVKcvyaCLDGGVAAEVREDLERR---GAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDD 305
                 5678899*************6.5678888899999999999*******************************9999988777777666666665554001146677777777777664...3478**********99888888888999999**************96 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5.4e-05
   TIGR03498 306 DavrgilDGhivldRaiaergryPainvlksvsRlakkvl 345
                 D + ++ DGh vl++++  +g  P++++ +s+ R+  ++ 
  MMETSP1174-20130828|6048_1 440 DQIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRVGIGTK 479
                 7788999**************************9865555 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   5.4e-15   2.2e-12      72     238 ..     141     308 ..     114     378 .. 0.78
   2 !    7.3   0.0     0.001      0.41     301     335 ..     440     474 ..     437     493 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.4e-15
   TIGR03497  72 vkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl..lgmiarnakadinvi..aLvGerGrevrefiekdLgeeG.lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtr 238
                   +g+e lG+vld +G pld+++  + +e+lp+  +     +  +i+  l+ gv +i++l  +G Gq + +             l ++ ++ +  +  +   L G    evre    dL + G ++++ +v a sd++  +++ +  +a+a ae frd+G++ l+++D    
  MMETSP1174-20130828|6048_1 141 TGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEHKRNlaLDVVQQQKDTGVKCVyaCLDGGVAAEVRE----DLERRGaMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGEDALVILDDFSA 308
                 5689999***************************99999999**************************999988777654440266777777777776622344555566665....55555538999****************999999*****************97654 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.001
   TIGR03497 301 DavrgilDGhivLsreLaeknhyPaidvlksvsrv 335
                 D++ ++ DGh vLs+++ +++  P +d  +s++rv
  MMETSP1174-20130828|6048_1 440 DQIISLADGHAVLSKKMRAQGMQPPLDPAQSLTRV 474
                 7788999***************************9 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.5e-07    0.0001      38     248 ..      99     307 ..      90     315 .. 0.80
   2 !    7.9   0.0   0.00046      0.19     320     354 ..     446     480 ..     439     493 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.5e-07
   TIGR01041  38 rGqvldsseglvvvqvfeg.ttgldkeatkvrf....lGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphn.elalqiarqakvrgeesefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdlt 248
                 rG vl s+  + +vq  +g t+ l ++ t  r+      ++    +  + lGr+l+ +G p+dg       e + + G+     + +     + +G++ i+ l  +  Gq l ++    + h+ +lal + +q k +g +  +a + +        a + ++d+e+ Ga+  ++++ + +d    +++ t  +a++ ae +  +k+   lvil d++
  MMETSP1174-20130828|6048_1  99 RGFVLCSRPPIYFVQPLDGhTRKLAPQET-ARLppaaSENAFLTGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEHKrNLALDVVQQQKDTGVKCVYACLDG------GVAAEVREDLERRGAMAHTTLVSAPSDATLGVQVATMATAIASAEGFR-DKGEDALVILDDFS 307
                 56666666666666666653445655555.34311112233445788999*****************9***********99999999999999*************************9999637*******9988777666665544......33667899************9999999999999999999999999875.88999999999975 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00046
   TIGR01041 320 teGqivlsrelhrkGiyppinvlpslsrlmkdGiG 354
                 ++G  vls+++ ++G++pp++   sl+r+     G
  MMETSP1174-20130828|6048_1 446 ADGHAVLSKKMRAQGMQPPLDPAQSLTRVGIGTKG 480
                 7899************************8555444 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   6.4e-09   2.6e-06      79     252 ..     141     314 ..     131     325 .. 0.83
   2 ?    1.1   0.0     0.069        28     318     345 ..     446     473 ..     440     483 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 6.4e-09
   TIGR01039  79 vpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvG.ktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidn...ifrftq 252
                   +G+e lGr+l+ +G p+d + + + +e+l+++ +  +    ++ +  l++G+ vi+ l+p+  G  + + G   +  k  l  +++++  k+ +  +v+a +        ++  +l+  g + +++lv    +   G+++    t+++ ae frd+ + d l+ +d+   if+f  
  MMETSP1174-20130828|6048_1 141 TGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEhKRNLALDVVQQ-QKDTGVKCVYACLDGG--VAAEVREDLERRGAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKGE-DALVILDDfsaIFKFWD 314
                 569*********************************99999999999*************************987776155555666654.5566666788766433..234566789999************************************977.88888885344788755 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.069
   TIGR01039 318 ldattvlsrkiaelGiypavdpldstsr 345
                  d+ +vls+k+ ++G+ p +dp +s +r
  MMETSP1174-20130828|6048_1 446 ADGHAVLSKKMRAQGMQPPLDPAQSLTR 473
                 58999******************99877 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.5e-07    0.0001      71     246 ..     139     314 ..     120     329 .. 0.83
   2 ?    0.9   0.0     0.077        32     316     339 ..     450     473 ..     441     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.5e-07
   TIGR03305  71 lkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgige.rcregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidn...ifrfiq 246
                 + + +g e l+rv+d  g ++d + +++ ++   v+ +  a   +   ++ + +g+ +i+ l+p+  g    ++g   + +     +l  ++v+q++   + c         + e+  +++  g + +t +v    +   g +     +a++ ae frd   +d l+++d+   if+f +
  MMETSP1174-20130828|6048_1 139 FLTGIGDERLGRVLDYVGLPLDGQAAPSCTETLPVFGTQGAEGSIDQITRGLDSGVTVINALTPMGLGQSLLVIGDDAMEHK---RNLALDVVQQQKDTGVKCVYAClDGGVAAEVREDLERRGAMAHTTLVSAPSDATLGVQVATMATAIASAEGFRDKG-EDALVILDDfsaIFKFWD 314
                 556799********************************9999999999999***************9999888888777654...4566788888887777776542123446789999***************************************865.566666664233888865 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.077
   TIGR03305 316 lvlsrkraseglypaidplkstsk 339
                  vls+k  ++g+ p +dp +s ++
  MMETSP1174-20130828|6048_1 450 AVLSKKMRAQGMQPPLDPAQSLTR 473
                 69*****************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 1638.22
//
Query:       MMETSP1174-20130828|6055_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 1876.39
//
Query:       MMETSP1174-20130828|6058_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 820.22
//
Query:       MMETSP1174-20130828|6061_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1174-20130828|6064_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|6062_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-139  462.2   0.0   9.8e-139  460.6   0.0    1.6  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
   4.5e-134  445.5   0.0   5.9e-134  445.1   0.0    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   1.8e-113  377.5   0.6     5e-113  376.1   0.4    1.6  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
     1e-110  368.6   0.0    2.7e-82  274.8   0.0    1.9  2  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
   1.1e-101  338.8   0.9    3.8e-73  244.7   0.4    2.0  2  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    1.6e-86  288.7   0.0    6.2e-66  220.8   0.0    2.0  2  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    1.8e-71  239.1   0.1    7.3e-71  237.1   0.1    1.7  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    8.5e-71  237.1   0.0    2.4e-70  235.6   0.0    1.5  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    1.2e-58  196.9   0.3    2.5e-47  159.6   0.0    2.0  2  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    2.3e-50  169.6   0.0    8.5e-41  137.9   0.0    2.0  2  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    2.1e-48  162.9   0.1    4.8e-48  161.7   0.0    1.4  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    9.6e-27   91.3   0.1    1.9e-26   90.3   0.1    1.4  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    3.5e-15   53.1   0.5    2.8e-14   50.1   0.4    2.0  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
    4.5e-08   30.2   0.0    5.6e-08   29.9   0.0    1.1  1  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
  ------ inclusion threshold ------
      0.019   11.3   0.2      0.029   10.7   0.1    1.2  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.6   0.0  3.6e-141  9.8e-139       1     467 []      42     527 ..      42     527 .. 0.95

  Alignments for each domain:
  == domain 1    score: 460.6 bits;  conditional E-value: 3.6e-141
   TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraq..gewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeee.................ldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGrengvaaleeytevk 467
                 +idG+ v ++ g  + i nPa++e+ia+vae+ ++d+  a+ +a ++     w+++++ er++il r+a+ll+ +  +la++etl tG+ l+e  +a ++ + + + +++ la ++eG++ + +     + vrreplGv++ +++wn+Pllia+ k++ alaaGn++v+kP e +P++ l++a++l++aGlP Gv+nvv+G+g + G++l++++ +ak+ +tGg +tGk i a  + ++k+ + elGG  P +vf d d++ av++   ++f  +Gq c +  r+lv+++i ++f++kl ++++ ++lGd++d  +++GPl+s ++ + v + ++ ++eega++++GG + +++                  l+ G ++ePtv++ v+  m   ++eifGPv+sv  f++e+ ++ +and+ yGl a+v+t+d+ ra+r+a  + aG++w+n+++   a +P+GG+k+sGiGreng+ al+eyt  k
  MMETSP1174-20130828|6062_1  42 WIDGKEVPSSGGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAKSVadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREY-TAQLQRVPEWFTYHGALAMTMEGSVPPFSDEdHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADRSRlwhsddddgddcgitalLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDASAPWGGFKDSGIGRENGIDALREYTASK 527
                 699999************************************9999876699*****************************************9.9************************99888758899*************************************************************************************************************************************************************************************************************************98775431111111222333333345689**********************************************************************************************************9765 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.1   0.0  2.2e-136  5.9e-134       3     480 ..      41     535 ..      39     542 .. 0.94

  Alignments for each domain:
  == domain 1    score: 445.1 bits;  conditional E-value: 2.2e-136
   TIGR02299   3 hlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafk..kwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd..eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkake..............vldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGigreGGdysfdfytetknvavalge 480
                 ++idG+ v+s+ g+  +  +Pa+ e +a+va+G ++d+  av++a+k+    +w+++ + er k+l + adl++++ +++a++e+l tG+ lr  +++ +r  e f+++   a  +++g++ p    ++l +  r p+Gv++l+tPwn P+++++ k++ alaaGn++v kp el+P++   la+++ +aglP+Gv+n+v G+G++aG+al + p +  + f+G tatG+ai +    ++k+   elGG  Pv+vf d d++ a++ v f  f   G+ c ++ r+lv+ si++ fvekl ++++ +r+GdP+d  +++GPl++   la v s ++ a++eGat+l+Gg +a+                +++ l+ G+y +Ptvl+ ++  m   q+eifGPv++v+pf+de++al land  yGl + vwt+dv+ra+r+a ++ aG+++vn++   d  +P+GG k+sGigre G  ++  yt +k+    +++
  MMETSP1174-20130828|6062_1  41 LWIDGKEVPSSGGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAKSVAdaRWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAM-TMEGSVPPFSdeDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADRsrlwhsddddgddcGITALLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDASAPWGGFKDSGIGRENGIDALREYTASKTTVFRMSD 535
                 68****************************************99988765569********************************************************98887.8899886543259*****************************************************************************************************************************************************************************************************************************988766665433333333333445789*************************************************************************************************************99987766555 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.1   0.4  1.8e-115    5e-113       5     478 ..      43     530 ..      40     533 .. 0.91

  Alignments for each domain:
  == domain 1    score: 376.1 bits;  conditional E-value: 1.8e-115
   TIGR03216   5 idGafv..esektfedispvdgkviaevaeagkeevdaavk.aaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpe................lgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiGreGGvhslefytelknvc 478
                 idG+ v  + + +    +p++g++ia+vae  ++++ +av+ aa++  ++ w +++ +er+++l + ad +++r  ++   e   tG+      + +++r    f     ++ +++  +   +    ++ l  + r+plGv ++++pwn pll+ + kv+ ala Gn++vvkp e +p +   la+v++++G+p+Gv nvv G+G  +aG+ l+ +p++  + ftG t tG+ai   +   vk+   elGG  + +vf d+d+d+av+gv+  af+ +Gq c++++r+ v+  i+d fv++l++ka+ l+lG p+d ++++Gpl+s    + v s  ++a+eeGatv+tGG   +                +++ l++G+y +pt++t ++   ++ ++eifGpv  v pf+ e  ++++and+ yGl a+vwt+d+ rahr+a+ + +Gv wvn+ +  d  +p+GG k sGiGre G+ +l  yt  k+ +
  MMETSP1174-20130828|6062_1  43 IDGKEVpsSGGGKIPIENPATGEIIATVAEGREDDIRTAVSsAAKSVADARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLRE-YTAQLQRVPEWFTYHGALAMTMEGSVPPFSD---EDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGH-TAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADrsrlwhsddddgddcgITALLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDASAPWGGFKDSGIGRENGIDALREYTASKTTV 530
                 666666333345666789**********************7366777889**************************************9865.567899*9999*9999999888877654443...4579999***********************************************************************6.79**********************************************************************************************************************************************9765222221111112222233446789***********************************************************************************************************9887665 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8   0.0     1e-84   2.7e-82       2     334 ..      59     393 ..      58     401 .. 0.97
   2 !   91.9   0.0   3.1e-29   8.5e-27     335     447 ..     414     526 ..     403     527 .. 0.96

  Alignments for each domain:
  == domain 1    score: 274.8 bits;  conditional E-value: 1e-84
   TIGR01780   2 vnPatGekigkvpevsveeveeaieaaeeal..ktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkree 334
                  nPatGe+i++v+e   ++++ a+++a +++    +++++ +er+k+l + ++l+ ++  dla++ tl  G+ l+e +++++    ++ ++++ a  + G+v + +++d+  +v ++P+Gv+a++tPWn P  + ++k++ alaaG ++vvkP e +P+s+l+la++ ++aG+P gv+nvv + ++  G  l+++P + k+ ftG ta+Gk + +    +vk+   elGGn P++vf+d d+d+av+g+    f + gqtcv a r++vh s+yd f++kla k + l++Gd +d ++++Gpl++   ++ v ++++ a e+Ga+v++gG +++ 
  MMETSP1174-20130828|6062_1  59 ENPATGEIIATVAEGREDDIRTAVSSAAKSVadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAMTMEGSVPPFSDEDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADR 393
                 79***********************9988772257*******************************************************************************************************************************************************************************************************************************************************************************************************77765 PP

  == domain 2    score: 91.9 bits;  conditional E-value: 3.1e-29
   TIGR01780 335 kggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglisevvipfGGvkesGlGregskyGieeylev 447
                 kgg+++ePtvl+ v+  m + ++e fGP+++v+ f+de ++++land+++Gl a +++ d+++ +r+a+++  G++ vn    +++++p+GG k+sG+Gre +   + ey+  
  MMETSP1174-20130828|6062_1 414 KGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDASAPWGGFKDSGIGRENGIDALREYTAS 526
                 79********************************************************************************************************9999875 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.7   0.4   1.4e-75   3.8e-73       3     353 ..      40     392 ..      38     400 .. 0.94
   2 !   92.7   0.0   1.8e-29   4.9e-27     355     467 ..     415     527 ..     407     532 .. 0.96

  Alignments for each domain:
  == domain 1    score: 244.7 bits;  conditional E-value: 1.4e-75
   TIGR03374   3 klliegklvag.egekqavynpatgevileiaeasaeqvdaavraada..afaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdi.lpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvk 353
                  l i+gk v    g k ++ npatge+i+ +ae   +++ +av +a +  a a+w   +p+ r+++l + ad ++     +a++e+   g+ l      ++  + + f +    a  ++g+      e h  ++rr+p+gv a ++pwn+pl++aa k++ alaagn +v+kp e++p++ l+la+++ d  lp+gv+nv+ g g+t g al+  + +  + +tg  atg+ i a     +k    elgg++pv+vf d+did+ v+gv    f  +gq c +a ri +  +iyd++vekl +    l++g+p d ++++gpl+s ++l  v++ v++a+  +  +v+tgg +++
  MMETSP1174-20130828|6062_1  40 GLWIDGKEVPSsGGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAKsvADARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLRE-YTAQLQRVPEWFTYHGALAMTMEGSVPPFSDEDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAgLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEG-ATVLTGGCRAD 392
                 68899998855157899**************************87765125678*************************************9986.566899999*********************************************************************************9999669****************************************************************************88889999**************************************************************9876.689****9876 PP

  == domain 2    score: 92.7 bits;  conditional E-value: 1.8e-29
   TIGR03374 355 kgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgygkdmslygledytvvr 467
                  g+y++pt+l++     +  q e+fgpvvs+  f+de   ++ ands ygl ++vwt dv rahr++  +  g+ wvn+h    +  p gg k sg g++  +  l +yt  +
  MMETSP1174-20130828|6062_1 415 GGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDASAPWGGFKDSGIGRENGIDALREYTASK 527
                 499**********************************************************************************************************9766 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.8   0.0   2.3e-68   6.2e-66       7     352 ..      42     391 ..      37     396 .. 0.91
   2 !   65.9   0.0   2.1e-21   5.7e-19     351     468 ..     414     529 ..     401     532 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.8 bits;  conditional E-value: 2.3e-68
   TIGR03250   7 riaGekvsr..davievrepydgevvgtvpkasvedvrralevaa.....ayrskltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakag..ykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllgnkrd 352
                  i+G++v +  + +i +++p +ge+++tv +++ +d+r a++ aa     a  s+++  erskil raa+ll+ar  +++ + tl +G + ++ + +++rv + +++ +a ++  +g +       +++    +  repl gv + +tp+nhpl   a+kv+ a+a+ n +v+kp e +p+s+l la +l +aGlp+ +++vv G  +  +++l +++ +  + ftGg a Gk+i a +g   k    elGGn p++v+ d d+d+a +  + G++  sGq c + krilv+ s+ d+f+e l +k+r l+ Gdp+d ++++G ++     ++++++v++a++eGa +l+g  r 
  MMETSP1174-20130828|6062_1  42 WIDGKEVPSsgGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAksvadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAMTMEGSVPP----FSDEDHLCVVRREPL-GVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGgnVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRA 391
                 5667766541156899**********************999766511111456789999************************************************99999999987743....245556667788998.69999*****************************************************************************************999863378999*******************************************************************************************************98875 PP

  == domain 2    score: 65.9 bits;  conditional E-value: 2.1e-21
   TIGR03250 351 rdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrle.ltpfGGikdsGlGykeGvqealksftnlkty 468
                 + G  y ptvl  v+p+++  ++e fGpv+ v+ f+d  +a++++n + ygl ++v t ++++  ++++++  G +  w    +r + ++p+GG kdsG+G  +G+ +al+++t  kt 
  MMETSP1174-20130828|6062_1 414 KGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVL--WVNAHHRNDaSAPWGGFKDSGIGRENGI-DALREYTASKTT 529
                 56889****************************************************************9999975..555677876257***********99996.8*******9995 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   0.1   2.7e-73   7.3e-71       3     473 ..      41     529 ..      39     533 .. 0.90

  Alignments for each domain:
  == domain 1    score: 237.1 bits;  conditional E-value: 2.7e-73
   TIGR01722   3 hlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfa..awaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldG......r...gykveG........yeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhiyGkqGvrfytrlktv 473
                 ++idGk v + ++ +ip++npat+e++a vae   +++ +av+sa ++ a   w+  +  er+++l r   ll++++ ++a++ ++  G+ l +   ++ r  e   +  +++  + G + +   +d      r plGv+a +tp+n p +i      +a+a Gn+ v+kp e  p + ++la++ls+aG+p Gv+nvv G ++ a   l   p +  + f G +a g+ i      + k   a  G    ++v+pd d ++a++ +   a+ a+Gq c++   +++  ++ + +ve++  +a+ +r+g   d ++++Gpl++  + + vas ++ + +eGa vl  G      r   +   +G         + G++  +t+l++v p m+++++eifGpv+ v+  +   +a+ l n+spyG G+a++tsd   a +   +i +G + vn       +   ++G+kds  G  +  G + +r yt +kt 
  MMETSP1174-20130828|6062_1  41 LWIDGKEVPSSGGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAKSVAdaRWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAMTMEGSVPPFSDEDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGyGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIyDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGcradrsRlwhSDDDDGddcgitalLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRND-ASAPWGGFKDSGIGREN--GIDALREYTASKTT 529
                 69******************************************9998761157777777999********************************************************999888888888899******************************************************************966899999**********************************************************************98776655555579****************************************************97733221111111122331111111235689***************************************************************************987665.45678999999888775..88999999998875 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.0   8.6e-73   2.4e-70      27     506 ..      33     528 ..      24     533 .. 0.92

  Alignments for each domain:
  == domain 1    score: 235.6 bits;  conditional E-value: 8.6e-73
   TIGR01237  27 ellGkdyplvinGeevete..akidsinpadksevvGkvakasvedaeqalqaakkaf..eewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlg.....................g.edddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtdskaGGpdylaqflqakt 506
                 ++l  ++ l i+G+ev +   +ki   npa + e++ +va    +d   a+ +a+k+     w  + ++er++il +aa+ l+ r  +l+ + +l  G+ + e  a+     +++ y+   ++ +++s +  s e         plGv+  ++pwn pl i++     ++ +Gn++v+kp e a++    l+++l +aGlp+Gv++ vpG G+  G  l   p +  + ftG  + G  i ++   v  G   +k   aelGG   v+v  + di++av+++  +af  +Gq c +a r++v+ ++yd++ve++  +++ l++g + +  +q+gp++     + + + ++ +++eg  vl+                     g ++  + G++ +pt+++ v +     q+eifGpvv+v+  +d  +al +an++ ygl  +v +    r +r + +   G l++n +      +  p+GGfk sG++    G d l ++  +kt
  MMETSP1174-20130828|6062_1  33 DYLLGEHGLWIDGKEVPSSggGKIPIENPA-TGEIIATVAEGREDDIRTAVSSAAKSVadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAMTMEGSVPPFSDEDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAV---V-GG--NVKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTggcradrsrlwhsddddgddcGiTALLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRND--ASAPWGGFKDSGIGREN-GIDALREYTASKT 528
                 5555567899******87522699999998.679*******************9997622579999************************************************************988888888888888899*********************************************************************************************988643...4.34..478899**************************************************************************************************9888779999******9999887766413345779****************************************************************************988765..678**********9765.6788888877776 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   0.0   9.1e-50   2.5e-47       2     343 ..      42     385 ..      41     400 .. 0.87
   2 !   35.5   0.0   3.8e-12     1e-09     363     452 ..     427     515 ..     408     535 .. 0.85

  Alignments for each domain:
  == domain 1    score: 159.6 bits;  conditional E-value: 9.1e-50
   TIGR03240   2 fidGkwr.aGqGeslesldpvtqevlwqgkaasaaqvekavkaarkaf..pawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGek.eseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaret.GkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksl 343
                 +idGk   +  G ++   +p+t+e +   ++  ++++++av +a k+   ++w+++   er +++ r a+ll+ +  +la++ +  tg+ l e +++++ + +  +       +  G++   +  d  +v+r  p Gv a+  p+n p  +   ++  al aGn++v kp el+p++  e+ k++++aGlp Gv+n+v G  +t G alaae++i  l ftG ++tG+ +   ++g+ ++    elGGn p++v    did av+ + + af+++Gq c  a+r+lv+++   da++e+l + a+ l++g+   +    +G+++s     ++ +  +++ ++g++ l
  MMETSP1174-20130828|6062_1  42 WIDGKEVpSSGGGKIPIENPATGEIIATVAEGREDDIRTAVSSAAKSVadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAMTMEGSVpPFSDEDHLCVVRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTaGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHYC-AELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHAS-IYDAFVEKLAAKARGLRLGDP-MDMTSQMGPLVSGPQLATVASQVDRAREEGATVL 385
                 788876513456788999***********************99987552268**********************************************9998887765443334444440445567789***********************************************************************755449******************************987765.5*******************************************976.569***************985.4556679****99877765555555555555544 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 3.8e-12
   TIGR03240 363 vtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGGiGasGnhrps 452
                 v+   +   +e fgp+++v+ ++d ++al+ an++ +Gl a + + d  + +++ ++i aG++ w +      ++ap+GG   sG  r  
  MMETSP1174-20130828|6062_1 427 VSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVL-WVNAHHRNDASAPWGGFKDSGIGREN 515
                 5555667789***************************************************98.555556667779********987765 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   3.1e-43   8.5e-41      35     396 ..      42     396 ..      36     401 .. 0.89
   2 !   29.6   0.0   2.1e-10   5.6e-08     396     503 ..     416     516 ..     407     542 .. 0.79

  Alignments for each domain:
  == domain 1    score: 137.9 bits;  conditional E-value: 3.1e-43
   TIGR01236  35 viggkevvksne.lievvaPadhqaklakltnateedvkkaveaald..akkeWselpfadraaiflkaadllsgkyreeilaatm.lgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnf.taiaanlagaPalmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGG.kyddskG 396
                  i+gkev +s+  +i + +Pa   + +a++ +  e+d++ av +a +  a   Ws++  ++r++i+ +aadll ++    ++  t+  g+    y a++  v    ++f ++ + a ++++  P  s + +l  v   pl G  a ++P+n    iaa  ++     Gn +v kP + a +s   l k+l +aGlPpgv+n+vp+ g + + +  a++ +a l ftG ta+ k +   v  n+++y        e GG   vlv p  d++e+v ++  gaf   Gq c +a r+ v  s+++ + e+l a+++ +++gd+ d++s mg++++  ++a + + +++a+++    ++l+GG + d s+ 
  MMETSP1174-20130828|6062_1  42 WIDGKEVPSSGGgKIPIENPAT-GEIIATVAEGREDDIRTAVSSAAKsvADARWSSVAPRERSKILGRAADLLQARLPDLARIETLsTGRCLREYTAQLQRV---PEWFTYHGALAMTMEGSVPPFSDEDHLCVVRREPL-GVCALVTPWNHpLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGNVKHY------CAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEG--ATVLTGGcRADRSRL 396
                 5788888777665899999986.5689***************98876346778********************99987777666652567778899998855...56899**************9899999998888888.99999*****9345777777766668*****************************************************************************99......57***********************************************************************************************76..788888736777765 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 2.1e-10
   TIGR01236 396 GyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakd.reaieeaekklrfaaGnfyindkstGavvgqqpfGGarlsGtndkaG 503
                 G++ ePtv+ s  P    ++ eifGPv++v  ++d+ +   l++  + s y+l  av ++d r+a + a +    +aG  ++n        +  p+GG + sG     G
  MMETSP1174-20130828|6062_1 416 GHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHA--LSL-ANDSPYGLGAAVWTSDvRRAHRMARD---ICAGVLWVNAHHRND--ASAPWGGFKDSGIGRENG 516
                 8999********************************876..444.5789*********9882444444443...589999999887665..567888888888766665 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   1.8e-50   4.8e-48      51     486 ..      54     515 ..      42     525 .. 0.85

  Alignments for each domain:
  == domain 1    score: 161.7 bits;  conditional E-value: 1.8e-50
   TIGR01238  51 eaqpvknpadrkdivGqvseadaaevqeavdsavaaf..aewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqv...edvldeesaka.........lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkledd..................vesekgtfvaptlfel..ddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpka 486
                    p+ npa   +i+ +v e  +++++ av+sa +++  a ws++ ++er+ il r+adll+ ++p+l  +    +G+ l++  a+++   ++  y++  +   e +++ +s +          lG+   ++pwn pl i   +++ alaaGn+++ kp e +++   +  ++l +aG+p+gv++++pG G++ Gaal++++ ia + ftG t++ + i   +         + ae GG   ++v      ++ v  v   af ++Gq c + + ++v   + d  ++ +      l++g p+ +t+ +Gp++       + + +++ ++ + +v      +d                     + g + +pt++      ++ ++ e+fGpv+ vv ++ +     +   n++ ygl   v +      +++ + + +G ++vn +         p+GG   sG G   
  MMETSP1174-20130828|6062_1  54 GKIPIENPATG-EIIATVAEGREDDIRTAVSSAAKSVadARWSSVAPRERSKILGRAADLLQARLPDLARIETLSTGRCLREYTAQLQRVPEWFTYHGALAmtmEGSVPPFSDEDhlcvvrrepLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVGGN---VKHYCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADrsrlwhsddddgddcgitALLKGGHYYEPTVLTSvsPAMSCFQDEIFGPVVSVVPFQDETH--ALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRND--ASAPWGGFKDSGIGREN 515
                 5679****976.5789*****************98762268**********************************************9999999999876511144444444444889999999***********************************************************************************************9777654...44679***********9999999999***************6555556899**********************************99999999999999999988865433322234444445577676664445778999**998651246899***************98764..56789*************999999999************876544..34578887777777655 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.1   6.9e-29   1.9e-26      16     451 ..      55     499 ..      42     506 .. 0.80

  Alignments for each domain:
  == domain 1    score: 90.3 bits;  conditional E-value: 6.9e-29
   TIGR02278  16 svevadaitGevlarvss.eGldlaaava.yarevGgkalraltfheraaklkalakylserkeelyalaa.ttGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivG...svgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld......................GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqfilglaafhGrlhlldrdda 451
                 ++++++ +tGe++a v+     d+  av   a+ v + +   ++ +er++ l   a  l+ r  +l ++ + +tG   r+ +  ++  +   fty            + +e+ + ++s +  +    +     Gv+  +  +n P      k++ a+ aG   +vkP   +      l k++ ++gl P G ++++ G   ++g  l +     ++ ftG +at++ +    +v+   ++        n+ vl   v pd  ++d  v+ ++    + +Gq c + +r+lv  +  +a +e l+a+ + ++lGdP +   ++Gplvs  q + v+ +v+   ++ga+v  g+                           G ++ Pt+l+   p  +   + e fGPv+++++++d+++a+ la      l a++ t+d + a+ ++ ++ a +  ++  +r+da
  MMETSP1174-20130828|6062_1  55 KIPIENPATGEIIATVAEgREDDIRTAVSsAAKSVADARWSSVAPRERSKILGRAADLLQARLPDLARIETlSTGRCLREYTAQLQ-RVPEWFTYHGAL-------AMTMEGSVPPFSDEDHLCV--VRREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSDAGL-PPGVMNVVPGyghTAGAALAAEPGIAKLDFTGGTATGKAIG---AVVGGNVKHYCAELGGNCPVL---VFPD-CDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLAAKARGLRLGDPMDMTSQMGPLVSGPQLATVASQVDRAREEGATVLTGGCRADRsrlwhsddddgddcgitallkgGHYYEPTVLTSVSPAMS-CFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGAAVWTSDVRRAHRMARDICAGVLWVNAHHRNDA 499
                 46677777777777775312345665554145666677777777777777777777777777777777754267777777777766.466677775432.......4567788888887766543..44555699999*****************************98877777789999***996.88******994445777788878888899********9875...455555554444445688888...4444.5699999****9999************************************************************************99986554458999999************************9999665.6788*********************************************999876655555555555 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.4     1e-16   2.8e-14     181     473 ..     161     467 ..     140     488 .. 0.71

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1e-16
   TIGR02288 181 dplklekrfeivpr...GialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqna.rqaqvy.tekaGvntviiestddlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkl.lgddaravallGaiqse....dtvariaearalG.evll.....dskklehpe............fpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarrvvrekGa 473
                 +p+  e +  +v r   G++ +++    p   +   +  +la+Gn+++vkp + a  p+  +v    +vl++aG+ p ++ ++    ++ +  +la +p +  +dftG++a G+ + +    + + y +e+ G   v++    d+   ++ +af   + sGq c +++ ilv +           yd  +++laa   +l lgd+   ++ +G ++s      ++++++ ar+ G  vl+     d  +l h++            +++ +   p +l   +   + +++e+fGp+  vv  +d  ha+ la+++    Ga
  MMETSP1174-20130828|6062_1 161 PPFSDEDHLCVVRReplGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELA--PI--SVLELAKVLSDAGLPPGVMNVVPGY-GHTAGAALAAEPGIAKLDFTGGTATGKAIGAVVgGNVKHYcAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHA---------SIYDAFVEKLAAKARGLrLGDPMDMTSQMGPLVSGpqlaTVASQVDRAREEGaTVLTggcraDRSRLWHSDdddgddcgitalLKGGHYYEPTVLTSVSPAMSCFQDEIFGPVVSVVPFQDETHALSLANDSPYGLGA 467
                 5555566666664432244444444445555555556678**********98866..54..4544557**********99987776.9999***********************99876513455552678888889999999*****************************76.........4578888888877777757888888888887776412213344567778777444432221133444454411111111111133444556878877777889*************************9987655554 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     2e-10   5.6e-08     101     268 ..     173     340 ..      76     363 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2e-10
   TIGR02518 101 vavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatGGeamvka..ayssGkpa..iGvGpGngpayieksanvkkavkkildsktfdnGticaseqsvvvekvnkdavveelk 268
                   +p+Gv a ++p   p   a  k  +++ a+n+iv+ p   a  +++e +k++++    aG p g++ ++      +   l  +  ++ +  tGG a  ka  a   G+         Gn p  +    ++++av+ +        G  c s + ++v     da ve+l 
  MMETSP1174-20130828|6062_1 173 RREPLGVCALVTPWNHPLLIAAKKVSVALAAGNSIVVKPPELAPISVLELAKVLSD----AGLPPGVMNVVPGYGHTAGAALAAEPGIAKLDFTGGTATGKAigAVVGGNVKhyCAELGGNCPVLVFPDCDIDEAVNGVAFGAFVASGQTCVSAKRILVHASIYDAFVEKLA 340
                 358*************************************************9987....699************************************999444555644311444569*******************999999***********************9985 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1    0.0001     0.029       5      38 ..      73     106 ..      70     112 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0001
   TIGR02342   5 ekpedvrtsnivaakavadairtslGpkGmdkli 38 
                  +++d+rt+  +aak+vada  +s+ p+   k++
  MMETSP1174-20130828|6062_1  73 GREDDIRTAVSSAAKSVADARWSSVAPRERSKIL 106
                 5899************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.85u 0.20s 00:00:01.05 Elapsed: 00:00:00.74
# Mc/sec: 982.78
//
Query:       MMETSP1174-20130828|6067_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    8.4   5.0       0.18    8.8   0.3    2.0  2  TIGR03791 TTQ_mauG: tryptophan tryptophylquinone biosynthesis enzyme MauG


Domain annotation for each model (and alignments):
>> TIGR03791  TTQ_mauG: tryptophan tryptophylquinone biosynthesis enzyme MauG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4    0.0051        21      20      34 ..      15      29 ..      10      48 .. 0.77
   2 ?    8.8   0.3   4.5e-05      0.18     142     176 ..      52      86 ..      37      88 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0051
   TIGR03791 20 rdgsvscatchnpsl 34
                 +gs sc+ c n  +
  MMETSP1174-20130828|6067_1 15 TSGSTSCSICENGHF 29
                589*******99765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 4.5e-05
   TIGR03791 142 apfdvwvegdesaisedakrgfalfkgkarcaach 176
                 +p  ++ e +es  ++d++ gf  ++g+++c+ac 
  MMETSP1174-20130828|6067_1  52 CPAGKYQESNESYYCNDCRAGFFSIEGRTNCSACG 86 
                 6888999***************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|6069_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.4   0.0     0.0037   14.3   0.0    1.1  1  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase


Domain annotation for each model (and alignments):
>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.1e-07    0.0037     281     317 ..      35      71 ..       9      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-07
   TIGR03217 281 yaGvyssflrhaeraaekygvdardilvelGrrklvg 317
                 +aGv  s lr+  r a+  +vda d l++ G+rk vg
  MMETSP1174-20130828|6069_1  35 FAGVIKSELRQDARRAAARDVDAWDALLDQGKRKKVG 71 
                 9*********999999999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|6063_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 800.45
//
Query:       MMETSP1174-20130828|6066_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 159.30
//
Query:       MMETSP1174-20130828|6072_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|6073_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1102.75
//
Query:       MMETSP1174-20130828|6070_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.6   1.3      0.022   11.1   0.9    1.2  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit


Domain annotation for each model (and alignments):
>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   5.4e-06     0.022     287     384 ..     295     400 ..     284     458 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.4e-06
   TIGR03143 287 lrqvvtavadGaiaateleryvkelkeklG.ieeayeeeeakekeekseeektpv..avakksellddslkqqlvavlerlek....kvtlvlfl.dgsneksvel 384
                 +  +  + +dG++  +e+e yv el+e++  ++ ++++ + +++e++s++  t +   ++++ + l  ++ q + + +e l k    ++++ +   ++ ne+s+ l
  MMETSP1174-20130828|6070_1 295 IGNIKVSLTDGTLIDVEAESYVAELREEVNkLRRELARIKHNHEEAASKDLVTYInsLPRQQMKTLTGEVSQEVLGAMESLVKsmvhQISITTSGeEEENENSIVL 400
                 556777899*******************986777777777788888888877777333566777788888887766666555410004444333202333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1809.03
//
Query:       MMETSP1174-20130828|6080_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1174-20130828|6077_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-43  145.7  15.2    1.3e-34  117.6   1.5    2.1  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.8e-41  140.3  10.8    1.6e-34  117.4   0.1    2.2  2  TIGR00898 2A0119: cation transport protein
    1.5e-29  100.2   0.3    1.5e-29  100.2   0.2    3.0  3  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    1.7e-20   70.9   0.1    1.7e-20   70.9   0.1    2.1  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.5e-16   58.2  24.0    1.7e-13   48.1   0.5    2.1  2  TIGR00893 2A0114: D-galactonate transporter
    1.5e-15   55.0   2.1    1.5e-15   55.0   1.5    2.1  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    3.5e-09   34.0   1.8    3.5e-09   34.0   1.3    2.1  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    6.6e-09   33.0  10.3    7.9e-09   32.7   0.2    2.3  2  TIGR00887 2A0109: phosphate:H+ symporter
    6.4e-08   30.7  10.2    6.4e-08   30.7   7.1    3.5  2  TIGR00880 2_A_01_02: multidrug resistance protein
    2.2e-06   24.8  13.5    0.00013   19.0   0.8    2.3  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    3.7e-05   21.1   6.1    3.7e-05   21.1   4.2    2.3  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   1.5   3.5e-37   1.3e-34      11     234 ..      49     273 ..      39     301 .. 0.88
   2 !   33.7   3.7   1.1e-11   3.9e-09     227     398 .]     348     523 ..     324     523 .. 0.75

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 3.5e-37
   TIGR00895  11 lsryqirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiipllllllli.kvLpEsikflvek..kpekvrkilnaiapslqaeaqselaeekseek 234
                  s+++i++l ++ +  + dG++  +l +++p+l  + +l+++el  + s+  +G ++Ga + g +aD +gR+r+   s+ l  +f +asa   n+ + l+lRfl+g  +Gg lp +i+++sE+ p ++r   +  + v y+iG  +++ laa+l+p   Wr  +++ + +p++l ++++   LpEs ++l e+  +pe+++    a+  +   e q+ + ++++ ++
  MMETSP1174-20130828|6077_1  49 WSSFTIEILFICGIGWITDGCENTALTYMLPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAAILLPG-SWRLYLIILA-VPAILTAFIAvARLPESPQWLLEQgrGPEAAAVLAGALRRKNGSERQERICHSSEFNE 273
                 588999***************************************************************************************************************************9888888899*****************7.7**9999995.8888877776157***********9667777777777777777777776666555444 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 1.1e-11
   TIGR00895 227 aeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladr.lgpkvlalllllaavfavlvvstls..sptllllllvilGl..fvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                 +++ s+++   + +k l + kl  +t++L +l  +++v+  +  +W P++    g+  +   ++l++ +v  v++ ll+ + + + + + ++++  + +a +++++++++    ++ + +++++ G+  f  g    +++++++++pt  R+ g g a +  +lg+i  pi +gvll
  MMETSP1174-20130828|6077_1 348 SVRGSTAEGLAAKMKRLWEPKLRPSTVCLCALWYVMNVAS-GWWTWAPIIAERYGITHNDLYTTLLVAKVFSVCAFLLAMIFVSFsFSSWAVVVANIGGALIMSALMAFFVgpAVDPIFFAILFWGFslFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLL 523
                 555666677778888999***********99988888765.7789***********9999888887777766665555444333303333666666666666666555443113444666666666433899999****************************************97 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.1   4.3e-37   1.6e-34      91     304 ..      60     272 ..      23     300 .. 0.85
   2 !   24.6   4.8   5.6e-09   2.1e-06     314     494 ..     358     547 ..     339     551 .. 0.78

  Alignments for each domain:
  == domain 1    score: 117.4 bits;  conditional E-value: 4.3e-37
   TIGR00898  91 lglaaledalegweyskdtlsstivtEwdlvcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird..WRwLlllvslPlvlflv.lvwfvpESpRwlisqgrieeAlkiLk.rvAkingkklpaevlslslek 304
                 +g  ++ d  e   +   ++++t+    dl++   +  + + sv+  G  +G+ ++G ++D  GR++++  s   t ++gv +a+ pn++ +l lr+L+G++ +g+ + ++++  Eflp k R + +i   v++ +G +l  +lA ++    WR  l+++++P +l+++ +v  +pESp wl+ qgr  eA ++L  + +++ng +    + ++s  +
  MMETSP1174-20130828|6077_1  60 CGIGWITDGCENTALT--YMLPTLEDKMDLSS---AELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAAILLPgsWRLYLIILAVPAILTAFiAVARLPESPQWLLEQGRGPEAAAVLAgALRRKNGSERQERICHSSEFN 272
                 4667777777777777..88899999999999...7788899************************************************************************************************99999987666559************9986515699********************983568999998877777777333 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 5.6e-09
   TIGR00898 314 aslldllrtpklrkttlllmllwfttafs..Yyg....LvldleelggniYldllisglvelpaklitlllidrLgRrktmaaslllag..vallllllvpeelkllrtalavvg.kagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagllsll 494
                 a +++ l  pklr  t++l +lw  ++++  ++     ++ + + ++ ++Y +ll+  +  + a l++++ ++      +++++++ ++  ++ l+ ++v   +  +  a+++ g  ++  + + ++y++ +  +PT+ R  g g++s+ +++Gsi  P++v vl + s f   v+f v   l  +l+l+
  MMETSP1174-20130828|6077_1 358 AAKMKRLWEPKLRPSTVCLCALWYVMNVAsgWWTwapiIAERYGITHNDLYTTLLVAKVFSVCAFLLAMIFVSFSFSSWAVVVANIGGAliMSALMAFFVGPAVDPIFFAILFWGfSLFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLLDRSIFALGVLFTVGWGLSLVLALF 547
                 5678889999*************999986333331121233456678889****999999999999998888754334444444444441145567778877777777777777735688999******************************************************9999999888887 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.2   4.1e-32   1.5e-29     116     374 ..       3     249 ..       1     264 [. 0.94
   2 ?   -2.4   0.1      0.44   1.6e+02     435     470 ..     361     395 ..     349     429 .. 0.68
   3 !    3.6   1.7    0.0067       2.5     627     699 ..     442     514 ..     406     548 .. 0.76

  Alignments for each domain:
  == domain 1    score: 100.2 bits;  conditional E-value: 4.1e-32
   TIGR01299 116 gapkagvrdelkdregppggeleaer.rkdeeelaqqyelilrecghgrfqwalyfvlglalmadgvevfvvgfvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalpsv.savvalttqpesprfllevgkhdeawmvl 374
                  +p a+v de++d e   + + ea   r   ++ ++  e i++  g   f   + f+ g+  ++dg e   + ++lp+ e  + ls ++   + +++  g  vga +wg +ad +gr++++  sl++  +f   s+    +  +l  r+l+g+ +gg +p+v++  +e+l  + r   +  l +++ ig   ++ +a  ++p               swr+++++ a+p++ +a  a++  pesp++lle+g+  ea  vl
  MMETSP1174-20130828|6077_1   3 SSPGAAVMDEISDDEDIRAPKDEAYIlRGAPDQASDAMEDIMNYIGWSSFTIEILFICGIGWITDGCENTALTYMLPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAAILLP--------------GSWRLYLIILAVPAIlTAFIAVARLPESPQWLLEQGRGPEAAAVL 249
                 578999*********99999999975266667778899***************************************************************************************************************************************************************99999..............38***********9835789********************99887 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.44
   TIGR01299 435 flrcfsyevreitlkltivwftlsfsyyglsvwfpd 470
                 + r +++++r  t+ l ++w+ +  +  g   w p 
  MMETSP1174-20130828|6077_1 361 MKRLWEPKLRPSTVCLCALWYVMNVA-SGWWTWAPI 395
                 55667777788888888888887765.355555554 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0067
   TIGR01299 627 mlagssvlsgvscfflsfgtsesamiallclynglsi...aawnaldvltvelypsdkratafgflnalcklaavl 699
                  ++g+ ++s++ +ff+     + ++ a+  l+ g s+    +w  + v++ + +p+  r ++fg+  a+ kl ++ 
  MMETSP1174-20130828|6077_1 442 NIGGALIMSALMAFFVGPAV-DPIFFAI--LFWGFSLffgGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSIS 514
                 57899999999999986544.4444444..455555422379****************************997653 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1   4.6e-23   1.7e-20      38     277 ..      36     263 ..       8     302 .. 0.79
   2 ?   -4.5  15.6       3.2   1.2e+03     334     487 ..     392     540 ..     371     550 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 4.6e-23
   TIGR00879  38 asellltpallgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipall.lllglfflPesprwLvekgkeeeArkslarl.rgeksedkel 277
                 as+ +  ++++   + f++ + ++  +++++ g  ++ +  +l  l ++ ++        s++++ ++s+   G+++ga f g + d  gr++++ ++  l ++ ++ s +a+  +s   + + R+l G++vG+   lv + +sE+ p+++R + +    ++  +G +++ ++   +++     +wr+ l + ++pa+l  ++++  lPesp wL+e+g+  eA+ +la   r ++++++++
  MMETSP1174-20130828|6077_1  36 ASDAMEDIMNYIGWSSFTIEILFICGIGWITDGCENTALTYMLPTLEDKMDLS-------SAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVAS-AACPNFS--SYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLA--AIL--LPGSWRLYLIILAVPAILtAFIAVARLPESPQWLLEQGRGPEAAAVLAGAlRRKNGSERQE 263
                 45556666677777778888888888888888888887776666666666666.......99***********************************988888888888.4444455..69*****************************************************..444..68889988888888887635899999****************9888875404444444443 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 3.2
   TIGR00879 334 YsptifenlGvstdtallvsiivgavnvaaTfva.iflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen.sigqgvvFiffgal 487
                 ++p i e+ G++ ++ +++ ++  ++ v+a ++a if++  f+ + + +  + g +i++ ++++ + + v        i++  ++  f++++  ++ p+++v++   fp+  R++g+ +a+a + l+++   ++  ++l+   +  gv F++  +l
  MMETSP1174-20130828|6077_1 392 WAPIIAERYGITHNDLYTTLLVAKVFSVCAFLLAmIFVSFSFSSWAVVVANIGGALIMSALMAFFVGPAVD------PIFFAILFWGFSLFFGGTW-PIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLLDRsIFALGVLFTVGWGL 540
                 688999999*9995555555566677788888887888889**********************99999998......5888888899999999888.**************************999999988888888885433344444444444 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.5   4.5e-16   1.7e-13      17     178 ..      78     236 ..      70     265 .. 0.92
   2 !   14.7  11.5   6.2e-06    0.0023     218     382 ..     374     533 ..     346     547 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 4.5e-16
   TIGR00893  17 avtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakv 178
                  +tl++ + ls+a++  ++s+ + g +++    gl+ d +G +     ++ l  lf ++ a+  ++ s ++lR+l+G a ++  P +i i++++ P+k r + +    ++  +g  + + l++ il   sW+l  ii +v+ai+ ++++++ +++ p+  ++
  MMETSP1174-20130828|6077_1  78 LPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAA-ILLPGSWRLYLIILAVPAILTAFIAVARLPESPQ--WL 236
                 578999****************************************999999999999999999*************************************99999999**************.799****************************999..44 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6.2e-06
   TIGR00893 218 iglalgqflvnillyffltwfplylkqergl..slleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagall 382
                 + l + ++++n++  +  tw+p++ +  ++   +l +++l+a +  +++f+  +++ ++s  + ++   +v+a + ++++ + + +++++   v++   a+ +   + f+ g   i+  v+++ ++  + g++ Gl +++ +l++i  Pi +g++ +    fa ++l
  MMETSP1174-20130828|6077_1 374 VCLCALWYVMNVAS-GWWTWAPIIAERYGIThnDLYTTLLVAKVFSVCAFL--LAMIFVSFSFSSWA--VVVANIGGALI-MSALMAFFVGPAVDPIFFAILFWGFSLFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLLDRSI-FALGVL 533
                 44444555555544.456999987666554333678889999999999985..66778999999996..88887777766.888888888889************************************************************9988766.555444 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   1.5   4.1e-18   1.5e-15      15     196 ..      58     237 ..      44     265 .. 0.89
   2 ?   -1.2   2.1      0.46   1.7e+02     306     381 ..     437     516 ..     382     542 .. 0.66

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 4.1e-18
   TIGR00891  15 saaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiilalflr.krvpeaevwke 196
                 ++  +g++ d+ +   ++  l  ++++ d++  ++a + s++   + vGa + Gl+aD vgrr ++  s++l  + ++++a +p++   l +r+++G ++gG+  l  ++a e  P k r+     l   y +G  l++ ++ ++ +  g sWr+   +  +p+il+ f+   r+pe+ +w  
  MMETSP1174-20130828|6077_1  58 FICGIGWITDGCENTALTYMLPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAAILLP--G-SWRLYLIILAVPAILTAFIAvARLPESPQWLL 237
                 445589*****************************************************************************************************************99766556779*******9999888765..5.9**999999999999877752699***99965 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.46
   TIGR00891 306 alvialllgqllivP...vfals.aekavLglglfl.lqllvqGvwGilPkhlaelapadaravvaGltYqlGnLaaalas 381
                 a+v+a + g  li+    +f ++ a   +  + lf    l+  G w i+ +   + +p+  r+++ Gl+     L++   +
  MMETSP1174-20130828|6077_1 437 AVVVANIGG-ALIMSalmAFFVGpAVDPIFFAILFWgFSLFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLP 516
                 333333333.33332111344444444555555555134555678999999999999999999999998888888776555 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   1.3   9.3e-12   3.5e-09      14     176 ..      74     234 ..      70     242 .. 0.90
   2 ?    2.7   8.6     0.029        11     228     372 ..     382     525 ..     367     562 .. 0.60

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 9.3e-12
   TIGR00881  14 falalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspq 176
                 ++ +lp l ++++ls+++l  ++s ++   +++    g+++D v+ r  + + L l+ +  +  ++ +++ + +al++l+G++ g   p++  +  ++ +++ r + +  + +   +g  l ++  l+ai l  sw+  +i+ ++ ai+ ++i+++ l +spq
  MMETSP1174-20130828|6077_1  74 LTYMLPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTG--LAAILLPGSWRLYLIILAVPAILTAFIAVARLPESPQ 234
                 56789************************************************************************************************99987765555666666666665..445667899**********************999997 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.029
   TIGR00881 228 vyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgyladl 372
                 v+ v  g  +W+p+ + +  g++  +  +  ++  +  +   lla +     f +   ++a i  ali+ +l+ +++ +a +++  +il+  + ++  G   ++ v   ++ p    G+  gl + f+ lg+i  ++ +g+l+d+
  MMETSP1174-20130828|6077_1 382 VMNVASGWWTWAPIIA-ERYGITHNDLYTTLLVAKVFSVCAFLLAMIFVSFSFSSWAVVVANIGGALIMSALMAFFVGPAVDPIFFAILFWGFSLFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLLDR 525
                 5555556666666533.33355555555555555555555555555544446666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666653 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   2.1e-11   7.9e-09      14     179 ..      53     208 ..      39     262 .. 0.86
   2 ?    3.3   3.4     0.017       6.4     399     443 ..     472     514 ..     400     542 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.1e-11
   TIGR00887  14 hvkaivvaGvGFftDsYDlFaislvtkllgyvYyetkgklpssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGi.lagaivalivlaafk 179
                  ++++ + G+G++tD  +  a+   t +l  +  e k+ l s   a++  +  +g+ +g  ++gl+ad++gr+r +   l ++ +  vasa+ ++ s+       l  r+l g+ +gg+ pl  +i sef   k R   i  +  m  +G  l++++ a+++ ++++
  MMETSP1174-20130828|6077_1  53 TIEILFICGIGWITDGCENTAL---TYMLPTL--EDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSS------YLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEfLSTGLAAILLPGSWR 208
                 4567889999999999876554...5555554..5789999999999*******************************************99987655......456799***************************99999999*999964789999999888776 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.017
   TIGR00887 399 vlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaii 443
                  +  fF   G     ++v    FP+  R+ + G++ a  k+G+i 
  MMETSP1174-20130828|6077_1 472 GFSLFFG--GTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSIS 514
                 2333333..45557899**************************95 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   7.1   1.7e-10   6.4e-08       5     140 ..      97     231 ..      93     232 .. 0.95
   2 ?   -1.9   4.9       1.9     7e+02      33      70 ..     417     454 ..     380     464 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.7e-10
   TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                  ++A gq+v + + gl++d vGr+     +l + +l+ +++a+  n+++ + +r+l Gf+ +  l+ + ++++++ +++ r + +  l ++  +g  l+  l a+l +  +wr  ++ila+ a+l++++ +  lpe
  MMETSP1174-20130828|6077_1  97 SVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRDRSIIGLHVMYEIGEFLSTGLAAILLPG-SWRLYLIILAVPAILTAFIAVARLPE 231
                 578999*****************************************************************************************************87.8*************999998888887 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.9
   TIGR00880  33 vglfifvlsqllfalssnitvliiarilqGfgaaaalv 70 
                 ++++ f+l+ + + +s + +  ++a i ++++ +a ++
  MMETSP1174-20130828|6077_1 417 FSVCAFLLAMIFVSFSFSSWAVVVANIGGALIMSALMA 454
                 55555666666666666666666666666666655554 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.8   3.4e-07   0.00013     241     374 ..      72     202 ..      34     248 .. 0.62
   2 !   10.6   3.6   0.00012     0.044     264     380 ..     409     525 ..     346     544 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.4e-07
   TIGR00883 241 llttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevR...ytgvslaynlasviggglapvi 374
                 ++ ty+   l+ +  + ls+++  ++  ++++  ++  ++ gl++d +Grr+ + +  +l +l+ v    a ++  +++  l+l +l+ ++v+    ++ ++ +e +p ++R   + g+ + y+++  +  gla+++
  MMETSP1174-20130828|6077_1  72 TALTYMLPTLEDK--MDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGV----ASAACPNFSSYLALRFLTGFAVGGNLPLVITIASEFLPPKIRdrsIIGLHVMYEIGEFLSTGLAAIL 202
                 5555555555555..446666666666666666666666666666666666633322222222221....1122235555666666666666666666666666666666663333455566666666666666554 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR00883 264 llvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsalless.sillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLva 380
                 +++l++ +++++ ++  + ++s  +   + ++++++  al++  l+  ++    + + +++l+ +++l+++ +  +m  + ++ fpt  R +g++la +++++   +l+ ++++ L +
  MMETSP1174-20130828|6077_1 409 TTLLVAKVFSVCAFLLAMIFVSFSFSSWA-VVVANIGGALIMSALMAFFVGPAvDPIFFAILFWGFSLFFGGTWPIMYVVSPQAFPTISRGAGFGLASAFSKLGSISLPIFVGVLLDR 525
                 33333333333333333333444444433.44455555555555555555444577789999999***********************************998777777777776655 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   4.2   9.9e-08   3.7e-05      28     116 ..      78     166 ..      72     235 .. 0.82
   2 ?   -2.0   2.1       1.1   4.1e+02     242     285 ..     415     458 ..     378     497 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 9.9e-08
   TIGR00710  28 lpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqa 116
                 lp+++ +++ s+    +  +  + g avg  ++G ++D  GR+      l++  l  +++a  +n   +l+lRfl +f++   l ++  
  MMETSP1174-20130828|6077_1  78 LPTLEDKMDLSSAELAAMASVIACGQAVGASFWGLIADVVGRRRAFNASLTLTFLFGVASAACPNFSSYLALRFLTGFAVGGNLPLVIT 166
                 799999999999999999**********************************************************9988655444433 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.1
   TIGR00710 242 evfgllfalniialifgsfligrlvkkigaksllrialvllivs 285
                 +vf++ ++l ++ +++ sf   ++v    +  l+ +al++++v 
  MMETSP1174-20130828|6077_1 415 KVFSVCAFLLAMIFVSFSFSSWAVVVANIGGALIMSALMAFFVG 458
                 45666666666555555555555444444444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 1769.85
//
Query:       MMETSP1174-20130828|6088_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|6084_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.54
# Mc/sec: 2243.81
//
Query:       MMETSP1174-20130828|6090_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1271.89
//
Query:       MMETSP1174-20130828|6087_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-147  488.7   0.0   3.4e-147  488.5   0.0    1.0  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    3.7e-06   22.7   0.0    5.1e-06   22.2   0.0    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    1.3e-05   22.2   0.0    2.3e-05   21.4   0.0    1.4  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    0.00011   19.0   0.0    0.00016   18.5   0.0    1.2  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
     0.0004   16.3   0.0    0.00055   15.8   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0025   14.5   0.0      0.007   13.1   0.0    1.6  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
     0.0028   14.8   0.0     0.0032   14.6   0.0    1.1  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
  ------ inclusion threshold ------
       0.02   11.0   0.2      0.027   10.5   0.1    1.0  1  TIGR01435 glu_cys_lig_rel: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.5   0.0  6.7e-150  3.4e-147       3     424 ..      15     443 ..      13     444 .. 0.94

  Alignments for each domain:
  == domain 1    score: 488.5 bits;  conditional E-value: 6.7e-150
   TIGR00877   3 vlvvgnggRehalaeklakseqvkevyvapgNaGtarlek.ekeveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleGeEvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvRfgDpeaqavLplLksdllevllavvegkLkevelkfeekaavavvlasegyPedyvkgdeitg.e.......ekeeaekekvfyAgve.eeegklvtsggRvlavvalgksleeArekayeavekikfeglfyRkdiglral 424
                 vlv+g ggRehala+kla s+qv++v+v pgN+Gta+ ++  +++ ++ +d+ +v +f k+k+i l+vigpE++L+ Gl d l + G  +fGp+++Aa+lE+sKaf+kd+++++g++ta+ye+ft++e ak+y+   + + +vvk +gLaaGKgv + +++ee+++a+++ +++k+fg ag++vv+EefleGeE+slla++dg++ v +p+aqdhkr+l+gD+g+nTGGmGay+p+p++t +  +++  + ++ tv ++ keg+py+G+Lyag++ltk+g p  le+n+RfgDpe++++LplL  dl+++ll++ +gkL++ +++++  aa +vv+a+ gyPe+y kg  i+g           ee  +  v++Ag++ +e g +vtsggRvl+v++ g +l++A + ay+ ++++kfeg+++R dig+ral
  MMETSP1174-20130828|6087_1  15 VLVIGGGGREHALAQKLAESPQVSRVLVSPGNGGTAMGHEsISNIPLNLDDFGAVLDFVKTKGISLVVIGPEQHLASGLGDFLIQGGAACFGPTAAAARLETSKAFSKDFFARHGLRTARYETFTDFEAAKKYVMGLDYR-VVVKCSGLAAGKGVLLPESTEETVAALKQTMVDKAFGSAGDEVVVEEFLEGEEASLLAFCDGTRSVGMPPAQDHKRALDGDQGLNTGGMGAYAPTPALTGDALEEALGM-IQTTVTEMGKEGHPYTGILYAGFILTKDG-PSFLEYNCRFGDPETEVLLPLLSGDLYKILLSCTQGKLDSSDVTWHGGAAATVVAAAPGYPEKYPKGMDIEGsLpcmekgaDGEEWGGGFVYHAGTAlKEGGGIVTSGGRVLTVTGRGPDLRSALSIAYSRLSRVKFEGMHFRTDIGWRAL 443
                 9**********************************9865516899**********************************************************************************************6.*****************************************************************************************************99887665.699**************************.**********************************************************************99532211111123334567*****77255678**********************************************97 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.9e-09   5.1e-06     620     840 ..      68     301 ..      62     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 9.9e-09
   TIGR01369 620 dvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsk.lldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneee....leryleeavevskekPvlidkyledavEvdvDavadgeevl.iagileHiEea.....GvHsGDstlvlppqklseevkkk....ikeivkkiake.lkvkGllniqfvvkdeevyviEvnvR 840
                  vld ++++ ++ v++     +a  l + l + g+  +G +a+   r+E  + Fsk ++ + g+  +++++ t+ e ak+ ++ + y v+v+ s   +G+++ + e++ee    l++ + +++  s    v+++++le + E+ + a +dg++ + ++   +H   a     G+  G   +  p+  l+ + +++    i+++v+++ ke   ++G+l   f+++++    +E n R
  MMETSP1174-20130828|6087_1  68 AVLDFVKTKGISLVVIGPEQHLASGLGDFLIQGGAACFGPTAA-AARLETSKAFSKdFFARHGLRTARYETFTDFEAAKKYVMGLDYRVVVKCSGLAAGKGVLLPESTEEtvaaLKQTMVDKAFGSAGDEVVVEEFLE-GEEASLLAFCDGTRSVgMPPAQDHKR-AldgdqGLNTGGMGAYAPTPALTGDALEEalgmIQTTVTEMGKEgHPYTGILYAGFILTKDGPSFLEYNCR 301
                 6889999999999999999999999999999999999997665.5789999999864999******************************************9998887633335666667778899999********.***********997661555666754.22333399999999999999999777665222266677777766245899999999999999999999988 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.4e-08   2.3e-05      91     198 ..     102     210 ..      94     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.4e-08
   TIGR01205  91 ipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleea.....leeafe.ydeevlveeaikgrelev 198
                  ++ G+  +a+ l   K ++K ++++ gl +a+y +++  e +     k+ ++ l + v+vK + +    Gv   +s ee  +a     +++af     ev+vee+++g+e ++
  MMETSP1174-20130828|6087_1 102 AACFGPTAAAARLETSKAFSKDFFARHGLRTARYETFTDFEAA-----KKYVMGLDYRVVVKCSGLAAGKGVLLPESTEETVAAlkqtmVDKAFGsAGDEVVVEEFLEGEEASL 210
                 57899********************************433333.....246899********************99999987661111145666515679**********9765 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.1e-07   0.00016      90     196 ..     107     213 ..      96     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.1e-07
   TIGR01142  90 PnaratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeak.egarg.saerviveefidfdveitlltv 196
                 P+a a++l   +   +   a + gl+ta+ye  + +e  ++ v  + + +vvk    ++GkG  + ++ e+  +a ++ + ++a g   + v+veef++ + e  ll+ 
  MMETSP1174-20130828|6087_1 107 PTAAAARLETSKAFSKDFFA-RHGLRTARYETFTDFEAAKKYVMGLDYRVVVKCSGLAAGKGVLLPESTEETVAALKQTMvDKAFGsAGDEVVVEEFLEGE-EASLLAF 213
                 89999999988877777766.569********************************************99999999887755665505679******9865.4555555 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06   0.00055     206     303 ..     110     212 ..      97     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR02068 206 iaveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees.....seviverfikGrdhrlLv 303
                  a  + + k   k  ++ +G+   + ++   +e+a++ +  l y vv+k      G+Gv +  ++ e + +  ++ ++++     +ev+ve f++G++  lL 
  MMETSP1174-20130828|6087_1 110 AAARLETSKAFSKDFFARHGLRTARYETFTDFEAAKKYVMGLDYRVVVKCSGLAAGKGVLLPESTEETVAALKQTMVDKAfgsagDEVVVEEFLEGEEASLLA 212
                 56678889999*************************************************99777666654444444443334459***********999886 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.4e-05     0.007     102     205 ..     104     205 ..      87     215 .. 0.85
   2 ?   -1.9   0.0      0.48   2.5e+02     242     315 ..     247     325 ..     244     347 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
   TIGR00514 102 fiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfien 205
                   Gp+a a rl   k+ +k+   + g+ +         d e a++    + y v++k ++   G+G+ +  + +e v +lk++  + + +   d+v +e f+e 
  MMETSP1174-20130828|6087_1 104 CFGPTAAAARLETSKAFSKDFFARHGLRTARY--ETFTDFEAAKKYVMGLDYRVVVKCSGLAAGKGVLLPESTEETVAALKQTMVDKAFGSAGDEVVVEEFLEG 205
                 56788888888888888888888877776543..3567788888889999***********************************99999999********985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.48
   TIGR00514 242 apspaltse.lrkkiGeaavkaa..ksig..ytgaGtveflldkegefyflemntriq.vehpvtemvtgvdlikeqirv 315
                 ap+palt + l +++G     ++   + g  ytg+    f+l k+g   fle n r    e  v   + + dl k  ++ 
  MMETSP1174-20130828|6087_1 247 APTPALTGDaLEEALGMIQTTVTemGKEGhpYTGILYAGFILTKDG-PSFLEYNCRFGdPETEVLLPLLSGDLYKILLSC 325
                 7999999763666777544333300232233888888899999655.578999998741344444444555655555555 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.2e-06    0.0032      86     179 ..     105     204 ..      14     217 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.2e-06
   TIGR01161  86 vapspealallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalg.dk.......elivEefvk 179
                 + p ++a +l  +k+  k +++++gl+++++ +  ++ e+ +k +  l+++vv+K + ++  G+G+ + +s+ee+  alk++  dk       e++vEef +
  MMETSP1174-20130828|6087_1 105 FGPTAAAARLETSKAFSKDFFARHGLRTARYET-FTDFEAAKKYVMGLDYRVVVKCSGLA-AGKGVLLPESTEETVAALKQTMvDKafgsagdEVVVEEFLE 204
                 5677888889999*******************7.6799*****************99887.7****999988887766665331223444455777777765 PP

>> TIGR01435  glu_cys_lig_rel: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   5.4e-05     0.027     469     561 ..     117     215 ..     110     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.4e-05
   TIGR01435 469 nkvvtkkvlaeaGfrvPqgeefsslakaleayalfenkavvkPkstnyGlGsfkegvsledf...aeal..eaf.kedkevlveeflpGteyrffvldd 561
                  k   k  +a++G+r    e f++++ a +  +  + + vvk      G G++  + + e     ++++  +af +   ev+veefl G+e  ++   d
  MMETSP1174-20130828|6087_1 117 SKAFSKDFFARHGLRTARYETFTDFEAAKKYVMGLDYRVVVKCSGLAAGKGVLLPESTEETVaalKQTMvdKAFgSAGDEVVVEEFLEGEEASLLAFCD 215
                 58889999********************999999999***************7666555543111344445788434568**********977665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.49
# Mc/sec: 1274.10
//
Query:       MMETSP1174-20130828|6093_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   21.0 125.4    1.5e-05   20.8  24.6    3.2  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.32    6.4 107.6    0.00034   16.2  34.3    3.1  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  24.6   7.3e-09   1.5e-05     765     984 ..       3     223 ..       1     225 [. 0.87
   2 !   10.7  32.0     8e-06     0.016     244     458 ..     215     421 ..     205     483 .. 0.78
   3 !    1.6  20.7    0.0045       9.3     661     869 ..     503     696 ..     477     752 .. 0.28

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 7.3e-09
   TIGR02168 765 reeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerles.lekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleekik 984
                 +++l+e l   +++l +aee+ ++l+++++ ++e+++++ ++ +e eael ++ e+a++++ +l++ + +e+ +l    +  + +++e++ +++ l a+++++ + ++ele+ +ee   +++s++++ +++ +  ++++e+  +++k+v++l re+ e r++ +++++++++le+ ++ l++r  e+ +l    ++e  +++e+   e+e +l+++ ++ +
  MMETSP1174-20130828|6093_1   3 EQALQETLMAMNDKLMTAEEKCTDLTRRLASAEESTAKQAKRAAEHEAELCRTAEKAERERDELKDaHASEMVRLGSIYRASKTEASEAAGRVAHLDAQVAKQATLITELENSIEESRRQVESHSKQANAHAAVSAQAQEDTLAYRKNVQDLSREAMEERTAKEAAHAKCASLEASLQDLKARYDENSNLASGRIAESGRAAEATILELEGKLTQVVQRYQ 223
                 56778888899999999999999999999999999999999999999999999999999998887624578889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888888888888887766655 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8e-06
   TIGR02168 244 leeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelr.sevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeel 458
                 l++ ++++++  +++++ +++ e+++++l++  +e+ eel+++++  qelk++++++e+ei ++++ + +l++++e+ ++    l+s +++++++l + +e+++e++ +  ++ +++e+++aele +++r+ee e+ +ee +  + ae+++  +s++ae+ rle++l++++ + + ++ +  +++ ++e+a  +         +++ee+++++ e 
  MMETSP1174-20130828|6093_1 215 LTQVVQRYQSLKTSAQEHIRAREADVQRLEASEREAVEELKAAKDSAQELKERVAEVEREIVEARQVELELRANQEHKSKLELSLDSYRTKAQAALRQANERTAEVTRQKYAVTEAFEASKAELEVAQKRAEESERMAEESQcMAEAEVKRIRESAAAEQVRLEEQLKNSAVNTTTTTGSDDDAAVSKEKA--A-------ALTQKEEKNSVTREG 421
                 6677899999999*******************************************************************99*************************************************999998887652678889999999****************99765554444443333322..2.......222222222333333 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.0045
   TIGR02168 661 gvitggsek.tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleee.reeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleee 869
                 g ++ + ++  ++ +l  ++++ +++++ +++ee+ ++ e++ k le+e+++ ee+ e+  k  ++                   + + + ++q e++ ++   e r+e++e+l+  ++e  +ea +e   ++++ ++++  +++l+ +l+++e++   l +e+++++ +++s ++++a+le+++  lee++  l ++ + l    +e+  +
  MMETSP1174-20130828|6093_1 503 GEMAEAVAEaVRQATLGLQQSLHDANARHRQAEEERSQWEQQCKVLEEERKKSEEKEESHCKGGQD------------------GQGAGHAVSQSEAQAAQTSREpRAEKKEALALVSTEPlDEATREEPVQDDREAKASLFMNELTGQLRKAERQRGLLVREVDKTRLEVQSERRRAAELEDRVAALEEEKVALGAREATLGGTSDEAGVN 696
                 112222222222222222222222222222222222222222222222222222222222222222..................11111111111111111111101111111111111111111111111111122222222222233333333333333333333333333333333333333333333333333222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.2  34.3   1.7e-07   0.00034     230     509 ..      14     291 ..       2     301 .. 0.72
   2 ?   -1.3  29.2     0.032        66     245     440 ..     217     408 ..     199     430 .. 0.55
   3 ?    4.0  16.2    0.0008       1.6     670     900 ..     447     684 ..     436     739 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.7e-07
   TIGR02169 230 lkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkr.eldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesre 509
                   +l ++e++   ++++la++ee+ +k  +++ e e+el + ++k e    ++++    e++++ +  +  k e +++   +a+   ++ + +  + ++e  i++ ++++e+ +++ +++++  ++ +e   + +++ ++l +e+ e+ ++ +++ ++ ++l+  l++lk + +e  +    r  e  + +e+ + el+ +l+++ ++ + l+   ++++e+i++ e  +++l++   +a +el++ k+  ++l++++ e+ere+ e++  +  ++ ++++
  MMETSP1174-20130828|6093_1  14 NDKLMTAEEKCTDLTRRLASAEESTAKQAKRAAEHEAELCRTAEKAERERDELKDAHASEMVRLGSIYRASKTEASEAAGRVAHLDAQVAKQATLITELENSIEESRRQVESHSKQANAHAAVSAQAQEDTLAYRKNVQDLSREAMEERTAKEAAHAKCASLEASLQDLKARYDENSNlASGRIAESGRAAEATILELEGKLTQVVQRYQSLK---TSAQEHIRAREADVQRLEASEREAVEELKAAKDSAQELKERVAEVEREIVEARQVELELRANQEH 291
                 345556667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777778888888888888888888887776655314457777777777777777777777766665554...5678999999*******999999999*******************99998877666555555533 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.032
   TIGR02169 245 kelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkeklekl.keelnelkreldrlleel.krleeelaelkaelerieekiael 440
                 + +++ +  ++  +e+i ++e+ ++++e+  +e+ +++++ +++ + ++ke+++e++ ei ++++   e + ++e+  + +  +++ + k ++ +++ +++ +e+ +++ +++e+++++k+ele  ++++ee +  a+e++   +++ +++ +    e+  l+   ++l++ + + ++  +++  a++ +  ek a+l
  MMETSP1174-20130828|6093_1 217 QVVQRYQSLKTSAQEHIRAREADVQRLEASEREAVEELKA-AKDSAQELKERVAEVEREIVEARQVELELRANQEHKSKLELSLDSYRTKAQAALRQANERTAEVTRQKYAVTEAFEASKAELEVAQKRAEESERMAEESQCMAEAEVKRIRESaAAEQVRLE---EQLKNSAvNTTTTTGSDDDAAVSK--EKAAAL 408
                 3344444445555666666666666666666666666666.66677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666655555555554332022222222...222222202222222222222222..222222 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0008
   TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedlea.....elseekieeieeelekl.eeevsriearleeieaelnklelekelleeeiq.elqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr 900
                 +++++ k++++ + l +    +++l+  l+      + +++++s ++ +  ++++e e++e+ +e++++    l+++l+  +    +++ee  + e++ + lee+ +k +e+ e+  +     + + + + ++e+++ +  +e +++ +++l+ +  e  ++ +++e  ++ ++ ++   ++el+ q ++ e++   l  ++++++ e++  + + +eLe++ + L++e   l a   
  MMETSP1174-20130828|6093_1 447 TEHNPSKVRSVDATLTKYAGREDQLFTSLQTKYGTTSPATASVSSSSSSATARREEGEMAEAVAEAVRQATLGLQQSLHDANARHRQAEEERSQWEQQCKVLEEERKKSEEKEESHCKggqdgQGAGHAVSQSEAQAAQTsREPRAEKKEALALVSTEPLDEATREEPVQDDREaKASLFMNELTGQLRKAERQRGLLVREVDKTRLEVQSERRRAAELEDRVAALEEEKVALGAREA 684
                 5567788999999999999999999999999999999999999999999999999999999999999999999999999888888888888888888888888877777777666433111113345566666665544414555666666666665544444444444444440344456777777777777777777777777777777777777777777777777665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       585  (0.142613); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.18s 00:00:01.21 Elapsed: 00:00:00.90
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|6089_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 918.64
//
Query:       MMETSP1174-20130828|6100_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 357.65
//
Query:       MMETSP1174-20130828|6103_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-23   79.1   0.3    7.9e-23   79.0   0.2    1.0  1  TIGR01027 proB: glutamate 5-kinase
    7.4e-23   78.4   0.1      8e-23   78.3   0.1    1.0  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
    4.1e-09   34.1   0.1    4.4e-09   34.0   0.1    1.0  1  TIGR00761 argB: acetylglutamate kinase
    0.00011   19.8   0.0    0.00011   19.7   0.0    1.3  1  TIGR02076 pyrH_arch: putative uridylate kinase
    0.00038   18.0   0.0    0.00042   17.8   0.0    1.0  1  TIGR02075 pyrH_bact: UMP kinase
    0.00091   16.2   0.2     0.0019   15.2   0.1    1.6  1  TIGR00657 asp_kinases: aspartate kinase
     0.0012   15.8   0.1     0.0014   15.6   0.1    1.1  1  TIGR00746 arcC: carbamate kinase
     0.0023   14.8   0.0     0.0029   14.5   0.0    1.2  1  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class


Domain annotation for each model (and alignments):
>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.2   1.5e-25   7.9e-23      94     175 ..       2      88 ..       1      90 [] 0.93

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.5e-25
   TIGR01027  94 vaQiLLtradlskrerylNarntleellelgvvpivNENDtva.....veeikfGDNDtLsalvaalveAdlLvlltdvdgLydadp 175
                 ++Q L t  d+++ +r    +n++ee+++ ++vpi+NEND+v+     ++e  f DND L+alva+ ++Ad+Lvlltdv gLyd+ p
  MMETSP1174-20130828|6103_1   2 TSQFLVTSYDFNNSSRRSHLKNSMEEIIKHNMVPIINENDAVSanqgyTDENIFSDNDALAALVASQMGADALVLLTDVGGLYDRAP 88 
                 68****************************************94555557889*******************************998 PP

>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   1.6e-25     8e-23     112     201 ..       3      90 .]       1      90 [] 0.94

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 1.6e-25
   TIGR01092 112 aqllvtdsdfrdedfrkqlsetvkellrlkvvpvlnendavstrkapyedssGivkdndslaallalelkadllillsdveGlydgppsd 201
                 +q+lvt  df++ + r +l+++++e+++ ++vp++nendavs+++  y d   i+ dnd+laal+a ++ ad l+ll+dv Glyd  ps+
  MMETSP1174-20130828|6103_1   3 SQFLVTSYDFNNSSRRSHLKNSMEEIIKHNMVPIINENDAVSANQ-GYTDE-NIFSDNDALAALVASQMGADALVLLTDVGGLYDRAPSE 90 
                 79***************************************9875.67775.6*********************************9985 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   8.6e-12   4.4e-09     125     184 ..      22      86 ..      10      90 .] 0.81

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 8.6e-12
   TIGR00761 125 kelleallkagiipvia...slaldeegqllNv..naDtaAaelAaaleAekLvlLtdvaGileg 184
                 k+ +e+++k++++p+i+   ++++++  +  N+  + D +Aa +A++++A++LvlLtdv G++++
  MMETSP1174-20130828|6103_1  22 KNSMEEIIKHNMVPIINendAVSANQGYTDENIfsDNDALAALVASQMGADALVLLTDVGGLYDR 86 
                 67899***********83333555544444566558999***********************998 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00011     118     149 ..      58      89 ..      21      90 .] 0.94

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.2e-07
   TIGR02076 118 TdavaallaEaleadllinitnvdgvYdkDPk 149
                  da aal+a ++ ad+l+ +t+v g+Yd+ P+
  MMETSP1174-20130828|6103_1  58 NDALAALVASQMGADALVLLTDVGGLYDRAPS 89 
                 59***************************997 PP

>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.1e-07   0.00042     103     169 ..      22      89 ..      13      90 .] 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.1e-07
   TIGR02075 103 kkvaesyskkkaikalekgkvvifaaGtG..npffttDtaaalraieieadvilkgkkgvdGvysaDPk 169
                 k+ +e  +k++++ ++++++ v    G    n f   D+ aal a ++ ad+++  ++ v G+y++ P 
  MMETSP1174-20130828|6103_1  22 KNSMEEIIKHNMVPIINENDAVSANQGYTdeNIFSDNDALAALVASQMGADALVLLTD-VGGLYDRAPS 89 
                 56678888999999999999999998865224455678999*****************.******9995 PP

>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.7e-06    0.0019     142     220 ..       6      84 ..       2      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.7e-06
   TIGR00657 142 iltdsefgrAkvleeikterleklleegiivvvaGFiGat.ekgeittLGRGGSDltAallAaalkAdeveiytDVdGiy 220
                 ++t+  f++++  ++  ++ +e+ +++++++++    +++ ++g++        D  Aal+A+ ++Ad + + tDV G y
  MMETSP1174-20130828|6103_1   6 LVTSYDFNNSS-RRSHLKNSMEEIIKHNMVPIINENDAVSaNQGYTDENIFSDNDALAALVASQMGADALVLLTDVGGLY 84 
                 67888888888.888888888888888888888888887767777776666778999*********************99 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.7e-06    0.0014     192     236 ..      34      84 ..      18      87 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.7e-06
   TIGR00746 192 vPvvkdgkelkGv......eaviDkDlasekLaeevnaDilviltdvdavy 236
                 vP++++++ ++        +   D D  ++++a +++aD+lv+ltdv   y
  MMETSP1174-20130828|6103_1  34 VPIINENDAVSANqgytdeNIFSDNDALAALVASQMGADALVLLTDVGGLY 84 
                 5555555554433111110445689999*******************8766 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.7e-06    0.0029     109     188 ..       7      86 ..       2      89 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.7e-06
   TIGR00656 109 lTddefgnAkikelateerLlelLeegiivvvaGFiG.ateeGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvytt 188
                 +T+  f+n   +  ++++ ++e++++++++++      + ++G++        D  Aal+a+ + Ad  ++ TDV G+y  
  MMETSP1174-20130828|6103_1   7 VTSYDFNNSSRR-SHLKNSMEEIIKHNMVPIINENDAvSANQGYTDENIFSDNDALAALVASQMGADALVLLTDVGGLYDR 86 
                 566666665543.3444777777777777777665441556777777666778999**********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|6108_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1013.34
//
Query:       MMETSP1174-20130828|6112_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 609.88
//
Query:       MMETSP1174-20130828|6114_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|6113_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1312.56
//
Query:       MMETSP1174-20130828|6120_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|6115_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 991.92
//
Query:       MMETSP1174-20130828|6116_1  [L=1276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.19s 00:00:00.94 Elapsed: 00:00:00.60
# Mc/sec: 2806.97
//
Query:       MMETSP1174-20130828|6125_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.4   0.0        1.4    7.1   0.0    2.8  3  TIGR02675 tape_meas_nterm: tape measure domain


Domain annotation for each model (and alignments):
>> TIGR02675  tape_meas_nterm: tape measure domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00034       1.4      24      52 ..     127     154 ..     122     157 .. 0.81
   2 ?   -1.5   0.0      0.17   6.8e+02      23      35 ..     196     208 ..     191     224 .. 0.75
   3 ?    1.3   0.0     0.023        93      24      41 ..     267     284 ..     262     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00034
   TIGR02675  24 QmlasGklraeeinslleavPgalqalAk 52 
                 Q++++Gkl++e  ++l+e +  a++al+ 
  MMETSP1174-20130828|6125_1 127 QSYSKGKLSGERRKRLEE-LGFAWDALDA 154
                 9**********9998876.4558888875 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.17
   TIGR02675  23 sQmlasGklraee 35 
                  Q++++Gkl  + 
  MMETSP1174-20130828|6125_1 196 RQAYSRGKLNEQR 208
                 5999999997554 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.023
   TIGR02675  24 QmlasGklraeeinslle 41 
                 Q++++Gkl+ e  ++l+e
  MMETSP1174-20130828|6125_1 267 QAYSKGKLSFERRKRLEE 284
                 999999999888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1863.08
//
Query:       MMETSP1174-20130828|6122_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-20   69.2   0.1    1.3e-09   35.3   0.1    3.1  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   3.2e-13   1.3e-09       3     102 ..     127     234 ..     125     268 .. 0.77
   2 !   24.9   0.0   4.5e-10   1.9e-06     246     370 ..     348     482 ..     313     491 .. 0.80
   3 !    5.3   0.0   0.00038       1.6     402     424 ..     562     584 ..     555     614 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.2e-13
   TIGR03417   3 pnililmvdqlagtllpaygpaevlkaPn.lkrlaarsvvfdnaytasPlcaParasllsGklPsrigv.ydnaaefasdip.....ty...ahylraaGyktalsGkmh 102
                 p ++++mvd +  + +   + +++ +a + l +laa++v ++  yt+   c+Para++l+G+ Ps+ g+ yd    f+++ p      y     yl+  Gy+t++ Gk  
  MMETSP1174-20130828|6122_1 127 PHLVFIMVDDMGWNDFGP-ESTDMAHASKyLYELAAKGVLLTRYYTQQ-SCTPARAAFLTGRYPSHCGMgYDTRGSFSASSPygvplEYkliPQYLKDFGYRTTIVGKWN 234
                 6789*******9998887.4557887764499*********9999876.6****************9966*******99976333232322268*************963 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 4.5e-10
   TIGR03417 246 eqirrarrayfa.aisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.....kmsffegsarvPllvaa...perleagrveaavstvdllPtlvelagveleevlp.aldGeslvpllkgkerk 370
                 e++ +  r  f+ ++  +d+ +  +++++e++++ d t +v++sd G    +    y     k   feg+ rvP +v++   p+ +  +  +      d lPtl+++a+ +++ +lp  ldG + +p + ++++ 
  MMETSP1174-20130828|6122_1 348 ENVTDMYRKRFGmTLVALDKSVRRVFDTIEAVGILDSTFLVVTSDNGGCPSDGSNNYplrggKFDVFEGGVRVPAFVYSrllPDSIVGTSFHGLWHVTDWLPTLIAVASNSTDVDLPqGLDGVNQLPFIVDEKKG 482
                 455555555555256789*****************************9988777766555567889***********972224444444555555667******************9889***999988766654 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.00038
   TIGR03417 402 dPeqlydleadPkelenlaeepe 424
                   + l+dl++dP+e++nl ++ e
  MMETSP1174-20130828|6122_1 562 SENWLFDLDQDPNERTNLLTTLE 584
                 5578*************977644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 1900.64
//
Query:       MMETSP1174-20130828|6124_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    8.8   5.4       0.16    9.2   0.4    2.2  2  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family


Domain annotation for each model (and alignments):
>> TIGR04041  activase_YjjW: glycine radical enzyme activase, YjjW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   3.8e-05      0.16       3      47 ..     343     386 ..     341     394 .. 0.85
   2 ?    1.3   0.8    0.0099        41      30      51 ..     392     413 ..     389     416 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 3.8e-05
   TIGR04041   3 lvnkiipfslvDGPGnRlaiFlqgCnlkClyChnPetinkCksCg 47 
                 ++ kii++s   GPG+   i l     +C  C   + +  C+ C+
  MMETSP1174-20130828|6124_1 343 QIAKIIQLSSFGGPGAAS-ILLTYGLRSCSACEQSKDVPLCTVCQ 386
                 689************965.555555679***************97 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.0099
   TIGR04041  30 kClyChnPetinkCksCgeCve 51 
                 +Cl C  P   ++Ck C++ ++
  MMETSP1174-20130828|6124_1 392 RCLACMGPGDRTICKRCTQTIA 413
                 7****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 1576.33
//
Query:       MMETSP1174-20130828|6126_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|6127_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|6128_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1394.13
//
Query:       MMETSP1174-20130828|6131_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 742.44
//
Query:       MMETSP1174-20130828|6129_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1535.24
//
Query:       MMETSP1174-20130828|6135_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|6136_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|6132_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1140.24
//
Query:       MMETSP1174-20130828|6139_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   14.2   0.0       0.01   13.4   0.0    1.3  1  TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family


Domain annotation for each model (and alignments):
>> TIGR01439  lp_hng_hel_AbrB: transcriptional regulator, AbrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.6e-06      0.01      11      25 ..      26      40 ..      25      41 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-06
   TIGR01439 11 vIPKeiRekLglkeG 25
                ++P++ RekLg++eG
  MMETSP1174-20130828|6139_1 26 TLPADLREKLGWQEG 40
                79************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 773.73
//
Query:       MMETSP1174-20130828|6137_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.1   0.6     0.0056   13.6   0.4    1.2  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
  ------ inclusion threshold ------
       0.86    6.0   6.9        1.2    5.5   4.8    1.2  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   2.7e-06    0.0056     300     386 ..      76     162 ..      60     176 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.7e-06
   TIGR02034 300 deapevadqfaaelvwlad.eallpGksyklklgtkkvrasvaeikhkvdvntlekeaakelelneiglvklsldeeialdayeenrt 386
                 +++ e+ ++ + e +  ++ + +l  k+   +  ++k+  + + ++ k++ + +e+e+a++l l e+ +++l l+e+ ++d+ +e+r+
  MMETSP1174-20130828|6137_1  76 QKERESRQHQEEEALSEEEqAHILEQKERARRKHAEKQYQKKRRVQ-KLNAQITEEEKAEKLALAEVRECRLMLEEPFTFDQLSERRQ 162
                 4444444444444444443044555555555666666666666665.999999******************************99987 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.8    0.0006       1.2     125     241 ..      35     150 ..      26     175 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0006
   TIGR00437 125 eerLGvpvvplsatkgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlvek 241
                 ++ LGv+         r++ ++++ +   + i+ +++   +++  +e+++ +e++   +e + ++ ++++++ ++ +e+++++  +++k  a++++ e+ +kl  +e+ +  ++++e+
  MMETSP1174-20130828|6137_1  35 QRLLGVKFWDGLTELRRQLFAAEDSLA-SNSIESMKEILVIKQKERESRQHQEEEALSEEEQAHIlEQKERARRKHAEKQYQKKRRVQKLNAQITEEEKAEKLALAEVREC-RLMLEE 150
                 456788888888888888888888888.6666677777777777788888888777777777888899999999************************9999999988777.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 1153.47
//
Query:       MMETSP1174-20130828|6140_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1228.07
//
Query:       MMETSP1174-20130828|6142_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.2   1.6    0.00015   19.0   1.1    1.1  1  TIGR00341 TIGR00341: TIGR00341 family protein
     0.0084   13.7   2.9       0.01   13.4   2.0    1.1  1  TIGR00271 TIGR00271: uncharacterized hydrophobic domain


Domain annotation for each model (and alignments):
>> TIGR00341  TIGR00341: TIGR00341 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.1   7.3e-08   0.00015     191     281 ..      22     117 ..      14     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 7.3e-08
   TIGR00341 191 flvlk..eltpqilsrtevd..ilseivAvlaGiagslSlas.gieeelvGVaisvslLpPavvlGlllaisdlelavkaliLlliNvvaldvgal 281
                 f++++  e   +i s++      ++ei  +++ +a+s+S a  g+++   GVa+++slL   vv G+ ++ s  +  v +  L+     a +v+ +
  MMETSP1174-20130828|6142_1  22 FIGSSfiERAREIVSEVVAAlfAYFEISVISLSFASSISGAAgGVLQARLGVAVAMSLLGTTVVGGICVTFSRAPYHVPSPDLFYCPFLASMVTNM 117
                 666665566777888775431145789999*********7652789999********************999988887777666666665555555 PP

>> TIGR00271  TIGR00271: uncharacterized hydrophobic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.0   4.9e-06      0.01      93     173 ..      37     118 ..      17     121 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.9e-06
   TIGR00271  93 lsevspdllslivavlaGiagslslts.giseslvGVaisvallppaavvgvalgigdllasssslillllNlvaisvaali 173
                 + + ++ ++ +i  +++ +a+s+s +  g+ ++  GVa++++ll   +v g+ ++++     + s  l+     a +v+ ++
  MMETSP1174-20130828|6142_1  37 EVVAALFAYFEISVISLSFASSISGAAgGVLQARLGVAVAMSLLGTTVVGGICVTFSRAPYHVPSPDLFYCPFLASMVTNMA 118
                 34444444556666778999999988779*************************9998877777776666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 450.12
//
Query:       MMETSP1174-20130828|6144_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|6146_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|6150_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1174-20130828|6152_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 575.95
//
Query:       MMETSP1174-20130828|6151_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 850.60
//
Query:       MMETSP1174-20130828|6154_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 668.46
//
Query:       MMETSP1174-20130828|6155_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-25   85.1   0.0    1.7e-13   48.1   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.2e-13   1.7e-09       6     128 ..      87     221 ..      82     229 .. 0.77
   2 !   48.1   0.0   4.2e-17   1.7e-13     175     303 ..     288     420 ..     276     434 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 4.2e-13
   TIGR01293   6 lgksglrvsclglgtwvvfgsqisdeqaedllklayes.ginlfdiaevy.......aagkaetelgkilkkkgwrrssyvittkif.wggkaeeer..gl....srkhiieglkaslerlqleyvdivlanradpss 128
                 l  s l vs   lgt ++fg q s+e a + l++a+++ g+n++d++e y       ++gka++ + k l     +r  +vi++ki  w+   +  r  g+     +  iie++  +l rl ++++d++ ++ +  + 
  MMETSP1174-20130828|6155_1  87 LPNSDLVVSKACLGT-TTFGDQTSEEDAFEQLRVAWDEyGVNFLDTSELYpvpsrpsTSGKADQIIAKWLA--TRQRDDVVISSKIAgWSDDIDWLRksGVgtctDKASIIEAVDDTLARLGVDHIDLLQIEWPSRTV 221
                 67899*********9.69*****************9754**********9444333335777777777775..45899*******966887665433223311215778******************99887665544 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 4.2e-17
   TIGR01293 175 iveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlk....ekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqv 303
                 +  q ey ++ r+  e  l e  h+  v +++ spla ++ ++ky+ + p+ +k+   + +       + +      +  + ++d + +a++ g tl qla+a+  ++    + ++ga+s+eql+++l++l+ 
  MMETSP1174-20130828|6155_1 288 VSVQNEYNILNRNSFECGLYESCHRTDVSLLAHSPLAGGVLTGKYERDGPSEAKSGKATAESRLnkfpGFQARYLSSQSGEAVNDYLRIADEYGVTLGQLALAFNYQQPFAAATIIGATSTEQLHDNLQALNC 420
                 5579********************************************99888776333333332333222222334456789***********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1234.65
//
Query:       MMETSP1174-20130828|6156_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-34  115.2  17.3    1.6e-25   87.6   3.7    2.0  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.9e-20   70.2  20.8    1.8e-16   57.1   6.3    3.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.2e-14   52.3  21.1    4.7e-06   24.2   0.3    5.3  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0012   14.9   0.2     0.0012   14.9   0.2    3.1  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0019   15.8   0.1     0.0019   15.8   0.1    4.8  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   2.8     5e-12   4.1e-09      88     223 ..      43     190 ..      30     201 .. 0.77
   2 !   87.6   3.7     2e-28   1.6e-25     232     580 ..     227     582 ..     218     600 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5e-12
   TIGR00990  88 aeekkstapkaaav..esade...lpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.P......vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassli 223
                  e+ ++ +p +++v  e+ad     p  de++ v  +   +k+   k    G k+ +   +++ai+  +ka+ l +d P        y nr a y   +++++ ++d t  l  +p+++k+ +rra  y+   +  dal++l +  l 
  MMETSP1174-20130828|6156_1  43 DEKPAASEPATPPVtdEPADAeapAPAKDEAKEVADALAAKKAEYDKYSSVGVKYIKATRYQQAIDALTKAIDLSDDlPnihgvdALYNNRGAAYEKAGKYKESLQDCTYVLTNNPKHIKVRKRRARIYKAQERLGDALVELCVIILT 190
                 2333455667777744566642224567887766655555555557999**************************996343333358*******************************************************998765 PP

  == domain 2    score: 87.6 bits;  conditional E-value: 2e-28
   TIGR00990 232 aqaverllkkfaeskakeiletkpeklPsvtfvanylqsfraklrpagledsaeldeelgkGllqlglksles..kadesyeeaarafekaldlg....elkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldkn...kfdealekfdlaielekelkpisvnvlPlinkalalfr.tkedfieaekllekalildPesdiavitlaqlllqq.ekvd...ealklferaaelarteeelvq 580
                 a  ve l +k   sk+k ++  + +        ++yl++ + +++++ ++d + + e +      + lk l     ++ +y++a + +++a +        ++ +a  l   G+f+ l  + + a a  +++   dP  ++  +k+a + l++gd d ae+ + +a +kd+  +d+ yhraql  ik + + a  d   +i+ +p +  + ++la+l    ++ a+ +al  +a  + p+  +vy   +el l  +   +++ al++f+ ai+ ++       n l  + kal l++ t  + + a   leka+ +dP +  a   la l+l   + +d   e ++++e aa+    ++el +
  MMETSP1174-20130828|6156_1 227 AAGVEDLWEKRDTSKLKGRMASRVAVGQLLLGYTEYLDIEK-EMQYKTVDDLTSAAETTEGAEKAMALKDLAFyyMTQRAYKHAKKTLDRAHEAAkeacLEGPALAHLLSWVGVFEHLCYQMDAAEAHYEQARAADPDSADILVKQAGVCLDKGDLDGAEKLYSEAEEKDPGSTDLLYHRAQLWVIKRDMERAVTDLRACIEKEPTHTIAIVKLACLLMNNDNPAEVNALIDQACEQRPNLSEVYQVKGELALSSStspDMEAALKNFEAAIDQDD------TNALARVYKALTLYQsTGMNASAAIPELEKAIDVDPTCIRAYYHLAELKLTVlKSLDegfEVVHMLETAADWCHEKNELQE 582
                 56678888888888888888887777777777788888755.7888889888888777766677788888877668999999999999888876644322356667777889******9999999999999999*********************************************************************************************************************98754334899**********9765......4678899********88899999**************************98523455222678899*****9988887644 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.0   6.1e-07    0.0005     686     790 ..      71     181 ..      63     197 .. 0.80
   2 !   57.1   6.3   2.2e-19   1.8e-16      86     333 ..     286     544 ..     271     551 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.1e-07
   TIGR02917 686 eeAlkllkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalkrapssqtv.......ikLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAa 790
                 +eA++++  l ++k +   + + +G  +++  +y++Ai+a++ka+ ++    ++        + ++a+ ++g+ +e+ +  + +L+++pk++++r   A +y a+++   A 
  MMETSP1174-20130828|6156_1  71 DEAKEVADALAAKKAEYD-KYSSVGVKYIKATRYQQAIDALTKAIDLSDDLPNIhgvdalyNNRGAAYEKAGKYKESLQDCTYVLTNNPKHIKVRKRRARIYKAQERLGDAL 181
                 678888888877776655.55678999******************998654444111111145678999***********************************99987775 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 2.2e-19
   TIGR02917  86 gyskeqvlplLarayllqgkfq...kvldele...kksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkk...fedAretlqaalksapeylpalllaGaseyqlg..eleqAeqylnqilkaaPnshqArr 333
                 g++k+ +l +La+ y+ q++++   k+ld +    k+  l+ +  a ll  +g+ +    ++++A++ +eqA a++p+s++  +  A + l +++ld+a++l +e+ ++dp+ +d l  +++l  ++ + e A+ ++r  ie +p +  a + la  l+++ + +e ++ +d + ++ pn +++ ++k+ ++++      +e A+++++aa+ ++  +  a+ +  ++ yq    +  +A   l+++++ +P  + A  
  MMETSP1174-20130828|6156_1 286 GAEKAMALKDLAFYYMTQRAYKhakKTLDRAHeaaKEACLEGPALAHLLSWVGVFEHLCYQMDAAEAHYEQARAADPDSADILVKQAGVCLDKGDLDGAEKLYSEAEEKDPGSTDLLYHRAQLWVIKRDMERAVTDLRACIEKEPTHTIAIVKLACLLMNNDNPAEVNALIDQACEQRPNLSEVYQVKGELALSSSTspdMEAALKNFEAAIDQDDTNALARVYKALTLYQSTgmNASAAIPELEKAIDVDPTCIRAYY 544
                 6666677777777777777665111334433211033345566667777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777666555577777777777777777777777777777776511333444456666666665555554 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   2.1   0.00017      0.14      34      88 ..      90     143 ..      69     157 .. 0.75
   2 ?    3.3   0.1     0.013        11      34      84 ..     130     180 ..     119     184 .. 0.88
   3 !   23.1   1.4   1.2e-08   9.8e-06      21     102 ..     280     368 ..     272     369 .. 0.88
   4 !    6.8   0.0    0.0011      0.92     141     189 ..     372     419 ..     368     424 .. 0.89
   5 !   24.2   0.3   5.7e-09   4.7e-06      45     180 ..     413     551 ..     409     558 .. 0.95

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00017
   TIGR02521  34 rvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesf 88 
                 +   +++Y+++  +++A ++l kA+ l  +  + + + Aly ++    ekA + +
  MMETSP1174-20130828|6156_1  90 YSSVGVKYIKATRYQQAIDALTKAIDLSDDLPNIHGVDALYNNRGAAYEKAGK-Y 143
                 55678999999999999999999999999999999888888777777777754.4 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.013
   TIGR02521  34 rvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekA 84 
                 + + +++Y ++g++++  ++    l+ +pk  ++ + +A +y+ + +l+ A
  MMETSP1174-20130828|6156_1 130 YNNRGAAYEKAGKYKESLQDCTYVLTNNPKHIKVRKRRARIYKAQERLGDA 180
                 5678999***********************************999888766 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.2e-08
   TIGR02521  21 sskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg.......elekAeesfrkAltlkpnngdvl 102
                 ++++++ ++ a +  +La  Y+ q +++ Ak+ l+ A e++++      alA+++  +g       + ++Ae+++++A + +p+++d+l
  MMETSP1174-20130828|6156_1 280 AAETTEGAEKAMALKDLAFYYMTQRAYKHAKKTLDRAHEAAKEACLEGPALAHLLSWVGvfehlcyQMDAAEAHYEQARAADPDSADIL 368
                 4445555555777779******************************************999999999******************9986 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0011
   TIGR02521 141 aglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAr 189
                 ag+c l++gd + aek  ++a ++dp++ + l+  a+l + k+++ +A 
  MMETSP1174-20130828|6156_1 372 AGVC-LDKGDLDGAEKLYSEAEEKDPGSTDLLYHRAQLWVIKRDMERAV 419
                 6777.578**********************************9999986 PP

  == domain 5    score: 24.2 bits;  conditional E-value: 5.7e-09
   TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqk...kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelkl 180
                  d+e+A  +l   +e++p    a   lA ++++  +  + ++   +A ++ pn  +v+   G    +     ++e A + feaAi + + +  ar+y+ + l +    ++  a   l++a+++dp+  ++ + laelkl
  MMETSP1174-20130828|6156_1 413 RDMERAVTDLRACIEKEPTHTIAIVKLACLLMNNDNPAEVNALIDQACEQRPNLSEVYQVKGELALSSStspDMEAALKNFEAAIDQDDTNALARVYKALTLYQSTGMNASAAIPELEKAIDVDPTCIRAYYHLAELKL 551
                 689***********************************************************98666665899***************************************************************987 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2     0.057        47     133     167 ..     140     174 ..      71     187 .. 0.58
   2 !   14.9   0.2   1.5e-06    0.0012     407     495 ..     309     397 ..     299     402 .. 0.85
   3 !    4.6   0.2     0.002       1.6     398     508 ..     402     511 ..     398     526 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.057
   TIGR03939 133 agkdeeAlkalkelkerfpsdaerlealaYvlraa 167
                 agk++e+l+  + +  ++p++ ++++ +a++++a+
  MMETSP1174-20130828|6156_1 140 AGKYKESLQDCTYVLTNNPKHIKVRKRRARIYKAQ 174
                 33344444444444444444444444444444444 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.5e-06
   TIGR03939 407 ysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPe 495
                 ++  l+ A ++++e+  ++P+ + l    +  e    + ++Ae  +++a++ +pds+   ++qa + ld+++ ++ae+l  +  ++ P 
  MMETSP1174-20130828|6156_1 309 AKKTLDRAHEAAKEACLEGPALAHLLSWVGVFEHLCYQMDAAEAHYEQARAADPDSADILVKQAGVCLDKGDLDGAEKLYSEAEEKDPG 397
                 6667777888888888888888888888888888888999****************************************999999885 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.002
   TIGR03939 398 qslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqrLarrldv 508
                  + +++l + + d++ A   l++  ++ P      ++la +    ++p + + l ++a    p+   +++ ++e+al+      +ea++++  a+  +d++ ++Lar +++
  MMETSP1174-20130828|6156_1 402 LYHRAQLWVIKRDMERAVTDLRACIEKEPTHTIAIVKLACLLMNNDNPAEVNALIDQACEQRPNLSEVYQVKGELALSSSTSPDMEAALKNFEAAIDQDDT-NALARVYKA 511
                 567889999999*************************************************9999999***************************999977.999998876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.025        20      57      89 ..      92     124 ..      71     176 .. 0.62
   2 ?   -1.6   0.4      0.52   4.2e+02      24      39 ..     296     311 ..     280     324 .. 0.59
   3 !   15.8   0.1   2.3e-06    0.0019      37     120 ..     350     433 ..     334     446 .. 0.88
   4 ?   -0.1   0.0      0.18   1.5e+02      59      98 ..     477     516 ..     474     538 .. 0.65
   5 ?    4.0   0.1      0.01       8.3      67     126 ..     521     584 ..     502     594 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.025
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpv 89 
                 + ++ + ++ +y++Ai+a + a  l+ d p+ +
  MMETSP1174-20130828|6156_1  92 SVGVKYIKATRYQQAIDALTKAIDLSDDLPNIH 124
                 556666677778888887777776666666543 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.52
   TIGR02552  24 lAYnlyqqgkyeeAek 39 
                 lA++ ++q  y+ A+k
  MMETSP1174-20130828|6156_1 296 LAFYYMTQRAYKHAKK 311
                 3444444444444433 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.3e-06
   TIGR02552  37 AeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 Ae  ++   a+dp +a+ ++  a ++  +++ ++A + Y+ a   d+ + + +yh+a+  + + + e+A  +L+++ie+    +
  MMETSP1174-20130828|6156_1 350 AEAHYEQARAADPDSADILVKQAGVCLDKGDLDGAEKLYSEAEEKDPGSTDLLYHRAQLWVIKRDMERAVTDLRACIEKEPTHT 433
                 5555566678999999999999*******************************************************9987655 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.18
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaeclla 98 
                 a++     ++e A++++++a   d  ++ + ++ a  l++
  MMETSP1174-20130828|6156_1 477 ALSSSTSPDMEAALKNFEAAIDQDDTNALARVYKALTLYQ 516
                 5555556677888888888887777777777666655554 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.01
   TIGR02552  67 eyeeAiaaYalaaaldlddprpvyhaaecll....algekeeAlkaLklaieiaeekeeyselk 126
                 + + Ai   + a  +d+   r++yh+ae +l     l+e  e    L++a++++ ek+e +el+
  MMETSP1174-20130828|6156_1 521 NASAAIPELEKAIDVDPTCIRAYYHLAELKLtvlkSLDEGFEVVHMLETAADWCHEKNELQELS 584
                 45678888888999999999*******966511115788889999************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1632.35
//
Query:       MMETSP1174-20130828|6163_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1091.11
//
Query:       MMETSP1174-20130828|6165_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.2   0.0        0.1   10.7   0.0    1.7  1  TIGR00165 S18: ribosomal protein S18


Domain annotation for each model (and alignments):
>> TIGR00165  S18: ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.5e-05       0.1      19      37 ..      87     105 ..      74     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.5e-05
   TIGR00165  19 DYkDlellkkfisergKil 37 
                  YkD ++ kk++se+gKi+
  MMETSP1174-20130828|6165_1  87 PYKDEDVQKKTVSEYGKIV 105
                 3*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 2128.32
//
Query:       MMETSP1174-20130828|6168_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.1    2.6  23.0        9.2    2.2  15.9    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  15.9    0.0022       9.2     202     395 ..     180     390 ..      62     449 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0022
   TIGR00934 202 dsvhsdqnsedvk.............sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekh..eatakirdkiseanslaaesdeesses........rriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksrya 395
                 ++v s+++ ++++             +   + e+ ss+r  +s+ +  + +v   +      + d+d +   rs++  q+    + ++++ ++++ea+  +  ++e    +         r q+   +   +++++++sq+++t  +++ s++  ++++l +s+ ++  +a + ++ +++++ +k  ++  ++++rk+++ ++r++ +k+ +k   +
  MMETSP1174-20130828|6168_1 180 NTVFSSESTSNSSpephdglppkkqkTTNHRRETRSSKRPASSEANAARGNVKRLQ--IGNRACDVDETRRTRSDKATQQARrvDVEEEEEEQSKEAQIIRNVQHE----GgpxeeeipPRKQQPNSKTGRKQQLDHTSQDQVTNSTRNVSENTGQQQQLIKSRRKEPEKAAQDQQQQQQQQSEKAAQDRPNGSTRKHPEKVTRDRSQKVTQKKSEK 390
                 11111111111112222222211111111112222223322222222222222211..122222333333333333333222001111222222222222222222....22222222222222222333333444444555555555555555555555555555555555444555555566666666666666666666666666655444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       360  (0.0877621); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.32
# Mc/sec: 2169.57
//
Query:       MMETSP1174-20130828|6170_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   15.0   1.4      0.012   13.5   0.0    2.2  3  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.26   1.1e+03     101     115 ..      14      28 ..       9      31 .. 0.71
   2 ?   -0.9   0.3     0.087   3.6e+02      66      79 ..      87     100 ..      62     154 .. 0.64
   3 !   13.5   0.0     3e-06     0.012      57     108 ..     141     193 ..     115     197 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.26
   TIGR01837 101 LrakveqLkkqveel 115
                  ++k+ +L++qv++ 
  MMETSP1174-20130828|6170_1  14 FKQKLSSLRTQVKKT 28 
                 567778888887765 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.087
   TIGR01837  66 dkvqrnldklekaf 79 
                 dk + +l+ +ek  
  MMETSP1174-20130828|6170_1  87 DKSKAELKSMEKDD 100
                 33333333333322 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 3e-06
   TIGR01837  57 vktkleqvrdkvqrnldklekaf..dervesvlnrLniPskeeveaLrakveqL 108
                  +  le+v + ++ ++    ++f  d+  ++vl+  ++Pske+v +L+++++ +
  MMETSP1174-20130828|6170_1 141 SEDILEKV-NATKEEWSMTSRLFrdDDPQDDVLKWFGMPSKEDVSNLKRELACM 193
                 45556666.7888899999998866677899*******************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1041.77
//
Query:       MMETSP1174-20130828|6171_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 721.23
//
Query:       MMETSP1174-20130828|6175_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1343.46
//
Query:       MMETSP1174-20130828|6176_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|6179_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|6182_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1174-20130828|6177_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-25   86.9   0.5    4.4e-25   86.4   0.4    1.1  1  TIGR02152 D_ribokin_bact: ribokinase
    4.5e-14   50.1   0.1    3.7e-13   47.1   0.1    1.9  1  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
    1.2e-08   32.1   0.3    1.1e-07   29.0   0.2    2.0  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    2.1e-08   31.4   0.2      1e-07   29.1   0.1    1.8  1  TIGR03828 pfkB: 1-phosphofructokinase
    0.00023   18.4   0.0    0.00045   17.4   0.0    1.4  1  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
     0.0052   14.0   0.0      0.016   12.4   0.0    1.8  1  TIGR00687 pyridox_kin: pyridoxal kinase
     0.0092   14.2   0.0       0.02   13.2   0.0    1.5  1  TIGR02609 doc_partner: putative addiction module antidote


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.4   7.6e-28   4.4e-25      48     286 ..      90     344 ..      63     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 7.6e-28
   TIGR02152  48 lgaevsmigkvGkDefgeellenlkkegidteyvkkvkktstGvAlilvdeegeNsIvvvaGaneeltpedvkaa..eekikesdlvllQ...lEipletveealkiakkagvkvlln.PAPaekkld....eellslvdiivpNetEaeiLtgie..vedledaekaaeklle.kgv..kaviitlGskGallvskdekklipa...lkvkavDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGa 286
                 +  ++s  g+vG+D++++++ e+ k++g++++y+   +k++tG+ ++l+  e +  I   a a ++++pe++++a  ++ i+++++  +    l ++le++ ++   a +++++v++n  AP   +      +  l  +d++  Ne+Eae+  ++    +d+e++ k+ +++ +  g   ++viit G++ +++v+++    +p+      + vDt +AGD+F g++ + La+g+sle++v+ +n aa + +++ G 
  MMETSP1174-20130828|6177_1  90 VPGATSYFGCVGSDAYATQMEEQAKADGVNVQYLVD-DKQATGTCAVLITGEHRSLIANLA-AANHFKPEHLENAvcKTIIDNAKFYYMAgffLTVSLESIMKIGAHAVEQKKTVIMNlSAPFIVQFFwdqlNAALPFTDVMFGNESEAEAFGEKMewGKDIETIAKNIAAMPKaSGFrsRTVIITQGRDPTIVVQNGVVYNFPVdllAPEQIVDTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVIIQQSGC 344
                 33678999*************************985.578899999999997666666555.556899999998744678999*99887533378999999999999999********77998765321122778999************98665433455666555555554315656689****************888888733345689*****************************************996 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.1   6.3e-16   3.7e-13      52     303 ..      82     345 ..      66     352 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 6.3e-16
   TIGR02198  52 NvakNlasLgaevvlvgvvGkDeagkaleellkeegietsellkdkerpTtvKlRvlarnqqllRvDfeekkalse.eeeeklleaikeklaeadavvlsDYakGvltkkvveeviaaarekgkpvlvDpkgkdfskY.....kga....tlltPNrkEleeavgaveeeeelvkaaekllee.....leleallvTrsekGmtllekekevlhlpa...aakevyDVtGAGDtViavlalalaagasleeaaelaNaaagvvvgklGta 303
                  va+ + ++ + ++ +g vG+D  ++++ee  k++g+++++l+ dk+ + t+ + + ++++ l+      + +++  + e++++   k+ +++a+   +  +   v  +  + ++ a a e++k+v++      + ++     + a     ++  N++E+e+  +++e  +++++ a+++        ++ +++++T++ +   +++ ++ v+++p    a ++++D  GAGD+  + +   la+g sle++++ +N aa v++++ G+ 
  MMETSP1174-20130828|6177_1  82 RVAQWMMKVPGATSYFGCVGSDAYATQMEEQAKADGVNVQYLVDDKQATGTCAVLITGEHRSLIANLAAAN-HFKPeHLENAVC---KTIIDNAKFYYMAGFFLTVSLE-SIMKIGAHAVEQKKTVIMNLSAPFIVQFfwdqlNAAlpftDVMFGNESEAEAFGEKMEWGKDIETIAKNIAAMpkasgFRSRTVIITQGRDPTIVVQ-NGVVYNFPVdllAPEQIVDTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVIIQQSGCC 345
                 3788889999999*********************************9999*********999985433333.344303344444...4556677776555544433222.366777788889999988765543322211111444222256778*******9998888888877777776541111145679********988887.899****973334679********************************************85 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.2   1.8e-10   1.1e-07     183     290 ..     232     345 ..      81     352 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.8e-10
   TIGR03168 183 NkeEleel.....vgrelkteeevieaarellekGvenvlvSlGadGallvtkegalkae..a.pkvevvstvGAGDsmvAgfllalekglsleealrlavAagsaaassegtelp 290
                 N++E e++      g++++t ++ i a+ ++   + ++v+++ G d  ++v++  ++       ++ ++v+t GAGD++ +g+l++l+kg sle+++  +  a+   ++++g   +
  MMETSP1174-20130828|6177_1 232 NESEAEAFgekmeWGKDIETIAKNIAAMPKASGFRSRTVIITQGRDPTIVVQNGVVYNFPvdLlAPEQIVDTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVIIQQSG--CC 345
                 6666544311111345566666677777777777799****************9988754114245569****************************999877766666666..44 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.8e-10     1e-07     113     281 ..     155     338 ..      80     351 .. 0.62

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.8e-10
   TIGR03828 113 eleallekleeql.kegdvlvlaGSlPrgvpedlyaelikllrekgakvilDtsgeaLlkvlkak.......plliKPNkeEleellgrelkteeevieaarkllek......gvenvlislGadGallvtkegalfaka...pkievkstvGAGDsmvAgfllalekglsleealrlavAvgaaa 281
                 + e+l +++ +++  ++++  +aG +  +v+ + + ++ +++ e++++vi+  s + + + +  +        +++  N+ E e ++g++++  +++ ++a++++++      + + v+i+ G d  ++v++  ++       +  ++++t GAGD+  +g+l++l+kg sle+++  +  ++   
  MMETSP1174-20130828|6177_1 155 KPEHLENAVCKTIiDNAKFYYMAGFF-LTVSLESIMKIGAHAVEQKKTVIMNLSAPFIVQFFWDQlnaalpfTDVMFGNESEAE-AFGEKMEWGKDIETIAKNIAAMpkasgfRSRTVIITQGRDPTIVVQNGVVYNFPVdllAPEQIVDTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVI 338
                 55555555554443455555555533.456666777777888888888888888776654443333333655667778999965.56666666666555555554432222227789*************99988865444458899***************************998765544444 PP

>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.7e-07   0.00045     124     240 ..     222     341 ..     201     345 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7.7e-07
   TIGR00097 124 llplatlvtPNlpEaeallg.....vkikteedlkkaakklaelgakavlikGGhledee.avdvlydeeeveilkaerietkntHGtGctlsaaiaaelakglelkeavkeakefvtsaikk 240
                  lp ++++  N  Eaea+ +      +i+t ++ ++a+ k +   +++v+i+ G   +    + v+y+   v  l  e+i   +t G+G++++    +elakg++l++ v++++   + +i++
  MMETSP1174-20130828|6177_1 222 ALPFTDVMFGNESEAEAFGEkmewgKDIETIAKNIAAMPKASGFRSRTVIITQGRDPTIVvQNGVVYNFP-VDLLAPEQIV--DTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVIIQQ 341
                 48999**********9985421111345555555555555555667899999988776653555555544.7788888876..578************************9999888888877 PP

>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.7e-05     0.016     134     255 ..     220     339 ..     206     346 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-05
   TIGR00687 134 ekaiPvaDiitPnlfelelLte.....rkvetleealaaadaLiakGpkivlvkhLvragksrdrsieilvvtaegaweiskpllqf..drepvGvGDliaalllakllrgkslkealekvvsalyevl 255
                 + a+P +D++  n  e+e   e     + +et++  +aa+ +      ++v+++      + rd+   ++vv +  +++    ll      + +G GD++a+ +l++l +g+sl++ + + + a   ++
  MMETSP1174-20130828|6177_1 220 NAALPFTDVMFGNESEAEAFGEkmewgKDIETIAKNIAAMPKASGFRSRTVIIT------QGRDP---TIVVQNGVVYNFPVDLLAPeqIVDTNGAGDAFAGGYLSELAKGSSLEKCVHAGNWAARVII 339
                 5689*************9986511111457777777777666655566677666......44555...3344443344333322222113589**********************99887776665555 PP

>> TIGR02609  doc_partner: putative addiction module antidote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.3e-05      0.02      11      52 ..      32      69 ..      25      76 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-05
   TIGR02609 11 vvtlpkEvleslglkeGDtlyvdeeegglklkrvkeekelek 52
                + t+pkE+l+  ++ke D++ + ee     +++ +e++e+++
  MMETSP1174-20130828|6177_1 32 SATVPKEFLQKYNVKENDAILAGEEH----MSVYTEMSEFNP 69
                6799*****************99999....666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 1164.80
//
Query:       MMETSP1174-20130828|6181_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   11.7   1.8        0.1   10.9   1.3    1.4  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   2.5e-05       0.1       5      29 .]      11      32 ..       9      32 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.5e-05
   TIGR01409  5 dFLkaa.aaagaaaglglllpsparA 29
                dFLk + +aa+++a+ +    ++++A
  MMETSP1174-20130828|6181_1 11 DFLKQSfTAAVGLAASA----GVVNA 32
                8******7777777776....45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|6184_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1238.67
//
Query:       MMETSP1174-20130828|6185_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 498.63
//
Query:       MMETSP1174-20130828|6186_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 200.62
//
Query:       MMETSP1174-20130828|6190_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|6191_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|6193_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 209.36
//
Query:       MMETSP1174-20130828|6194_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-10   37.6   0.0      0.015   12.3   0.0    4.2  4  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   1.5e-05     0.061      54     102 ..      41      95 ..      14      99 .. 0.67
   2 !   12.3   0.0   3.6e-06     0.015      45     103 ..      97     156 ..      94     183 .. 0.76
   3 ?   -1.8   0.0      0.07   2.9e+02      64      79 ..     204     219 ..     201     229 .. 0.75
   4 !    9.9   0.0   1.9e-05     0.078      35     104 ..     234     301 ..     220     306 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.5e-05
   TIGR03547  54 reqavaavvdgklyvFgGv......gkeesesslqvlddvykydpkknsWeklet 102
                 ++ +v +  dg +y+FgG+      g+++s  +   +dd ++yd ++n+W++++ 
  MMETSP1174-20130828|6194_1  41 QHSTVLSTDDGCMYMFGGTnggyqpGRQTSFLFGLEFDDLWRYDVERNEWQQIQH 95 
                 445566666889*****973321112222222334589**************986 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.6e-06
   TIGR03547  45 kiaefpgaareqavaavvdgklyvFgGvgkee..sesslqvlddvykydpkknsWekletr 103
                 + a +pg  r +  ++ v+gkl+v+gG+  +   ++  lq l d ++yd ++  W + e++
  MMETSP1174-20130828|6194_1  97 RTAVWPGP-RCDHGSVCVGGKLWVYGGLRGDAsgTADGLQALGDLWSYDLTTGMWLRHEAS 156
                 56778886.555678899*********966553678889****************886654 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.07
   TIGR03547  64 gklyvFgGvgkeeses 79 
                 + +yvFgG  ++ ++ 
  MMETSP1174-20130828|6194_1 204 QGFYVFGGRRRNGKDR 219
                 5679999988886554 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 1.9e-05
   TIGR03547  35 dlkkkekgWkkiaefpgaareqavaav.vdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrs 104
                 d+++   +W ++ + p+ +r + +++v  +g + +F+G+     +  l+   dv+ ++ ++ sW+ l+t s
  MMETSP1174-20130828|6194_1 234 DDDDDAVHWIQLESLPASPRCHFASTVsPAGTILIFSGNES---DFLLRCPCDVWAFEGHSRSWRSLSTLS 301
                 77888899***********988665551699*******765...5999*******************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 985.09
//
Query:       MMETSP1174-20130828|6200_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 585.34
//
Query:       MMETSP1174-20130828|6196_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1198.60
//
Query:       MMETSP1174-20130828|6201_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|6199_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1737.26
//
Query:       MMETSP1174-20130828|6204_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 901.17
//
Query:       MMETSP1174-20130828|6208_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 579.95
//
Query:       MMETSP1174-20130828|6207_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   17.4   0.1     0.0067   13.0   0.0    2.3  2  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.8   0.0    0.0041        17     122     148 ..       3      29 ..       1      46 [. 0.72
   2 !   13.0   0.0   1.6e-06    0.0067     323     360 ..     124     160 ..     115     170 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0041
   TIGR03300 122 aedGkelWrakvssevlsaplvanglv 148
                 a+dG+ lW +++++ ++  p+v+ + v
  MMETSP1174-20130828|6207_1   3 ATDGSRLWLTTLDAPIFGTPFVSLSAV 29 
                 578999999999999999998886665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.6e-06
   TIGR03300 323 vvvgDfeGylhlLdredGslvarakvdgsgiaaapvvl 360
                 v+v+   G l++L+ e+G+++a+++ +g+ ++++pvv+
  MMETSP1174-20130828|6207_1 124 VTVATRLGSLYVLSLETGNILAQHSFEGQ-VFSSPVVV 160
                 44445556666666666666666666665.55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1174-20130828|6209_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0009   15.9   0.1       0.24    7.9   0.0    2.0  2  TIGR04082 rSAM_for_selen: selenobiotic family peptide radical SAM maturase


Domain annotation for each model (and alignments):
>> TIGR04082  rSAM_for_selen: selenobiotic family peptide radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00017      0.69     115     173 ..      27      84 ..       3     106 .. 0.81
   2 !    7.9   0.0   5.9e-05      0.24     185     214 ..     129     155 ..     115     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00017
   TIGR04082 115 petgkvlvepadeedLlalkivaekldaeeaaleagvelaeldalldkaarkGlllkpa 173
                 +e+++v v   + ++L+a +++  ++++ +++++a+++  +ld ++ + ++ G l +p+
  MMETSP1174-20130828|6209_1  27 RESTSVSVTAVELKKLMAAQVLGGDISSGQNEAKASLHAVDLDMAVSHLVSAGFL-RPR 84 
                 46677888889999**************************************975.444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 5.9e-05
   TIGR04082 185 deeklseeflkaevftLqWhitqaCDLhCr 214
                   + l+++ l+ +vf LqWh+    DL Cr
  MMETSP1174-20130828|6209_1 129 LMRVLTKKKLRRSVFPLQWHVM---DLVCR 155
                 556677888999********95...88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1174-20130828|6214_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1372.69
//
Query:       MMETSP1174-20130828|6223_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1174-20130828|6221_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1356.30
//
Query:       MMETSP1174-20130828|6224_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|6226_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 251.21
//
Query:       MMETSP1174-20130828|6218_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   16.8   3.3      0.015   11.9   0.4    2.3  2  TIGR01932 hflC: HflC protein
  ------ inclusion threshold ------
       0.13    9.5   5.0      0.076   10.3   1.6    1.9  2  TIGR01933 hflK: HflK protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.1    0.0008       1.6      66     100 ..     244     278 ..     214     335 .. 0.75
   2 !   11.9   0.4   7.5e-06     0.015     226     275 ..     424     473 ..     404     512 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0008
   TIGR01932  66 dakiqtvDgeadrivt..kekkdlivdtyikWrieDf 100
                  +kiq   ++++ri+    ++  + vd+++ W+ie++
  MMETSP1174-20130828|6218_1 244 SQKIQS--NDLKRILAtsADNVLMSVDATVIWKIENV 278
                 445554..44555554336677777888888888876 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 7.5e-06
   TIGR01932 226 ArkyRsqGeekaeelrakaekEvvkiLseAereariikgegdaeaAklys 275
                 A+      e+++ e+ a+ +    ki ++ e +a+ii++egd++aA l  
  MMETSP1174-20130828|6218_1 424 AQGAVAAAEAQKFEVVARGQAAAEKIRARGESQAKIIRAEGDRRAAELVE 473
                 555556667788888888888888999*******************9864 PP

>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.12   2.5e+02      24      74 ..     226     278 ..     207     317 .. 0.70
   2 ?   10.3   1.6   3.7e-05     0.076     126     199 ..     395     467 ..     383     489 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.12
   TIGR01933  24 pGlnlkipfieevykvnv.ekvrelakeglmltkDeni.vevelnvqYkisdp 74 
                  G  + ++  +++++  + +k+++   +  + t+  n+ ++v+ +v +ki++ 
  MMETSP1174-20130828|6218_1 226 GGDTYLLTHRNWKFQKFIsQKIQSNDLKRILATSADNVlMSVDATVIWKIENV 278
                 55555555556665554414455555555555666665257888888888775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.7e-05
   TIGR01933 126 eildsydlGitvvdvnlqsarpPeev.keAFddviaAredeerlineaeayanevvPkarGeAqriieeAkgYke 199
                 ++ ++y  G++++++n+ +a+p +ev ++   +   A  + +++   a+ +a+ +  +arGe q  i  A+g + 
  MMETSP1174-20130828|6218_1 395 TVTRTY--GVHIISINVVAAVPADEVlQSSLAQGAVAAAEAQKFEVVARGQAAAEKIRARGESQAKIIRAEGDRR 467
                 554444..9***************994567788888888888888888888888888999999888877877543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1858.55
//
Query:       MMETSP1174-20130828|6229_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.9    3.6  16.2        4.1    3.5  11.2    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  11.2     0.001       4.1     335     413 ..      34     120 ..       3     143 .. 0.29

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.001
   TIGR02442 335 pdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaes..aeevalepagkifrvkllavska.......rargasGrrsk 413
                 p++ek+d++++k+k+e+k+++ ++ +k+d+k++++k+++ ++++   + + + ++ag+  +  + ++s+a        + ++sG++ k
  MMETSP1174-20130828|6229_1  34 PKKEKKDKHSKKDKRERKEKK-SKKEKKDKKKRKKKDKKAKKSRGnsPVQLSKFHAGDYDSASSSSSSSAdsdvstvARDSRSGKKIK 120
                 222222222111111111111.111111111111111111111110011111111111111111111111001111112222333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       421  (0.102633); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 510.59
//
Query:       MMETSP1174-20130828|6241_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 757.99
//
Query:       MMETSP1174-20130828|6243_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1174-20130828|6246_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 766.96
//
Query:       MMETSP1174-20130828|6245_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1487.88
//
Query:       MMETSP1174-20130828|6249_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 127.73
//
Query:       MMETSP1174-20130828|6252_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|6253_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-23   80.2   0.0    3.3e-23   79.9   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      2e-20   70.9   0.7    1.9e-19   67.7   0.5    1.9  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      7e-18   62.7   0.1    9.4e-16   55.6   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.8e-17   59.0   0.0    1.8e-15   54.3   0.0    2.0  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.8e-15   54.7   0.0    1.5e-12   45.2   0.0    2.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.1e-15   53.9   0.0    2.3e-12   44.9   0.0    2.1  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.2e-15   52.9   0.1    1.7e-12   44.5   0.0    2.1  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.5e-15   52.8   0.0    7.4e-12   43.2   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.4e-14   49.9   0.0    2.3e-13   48.0   0.0    1.8  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.7e-14   49.7   0.0    1.7e-13   48.4   0.0    1.5  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.2e-14   48.8   0.1    2.2e-11   40.6   0.0    2.0  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.5e-14   49.3   0.1    3.6e-11   40.9   0.0    2.1  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.8e-13   48.3   0.0      5e-12   43.5   0.0    2.0  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.2e-13   48.1   0.0    6.1e-12   43.3   0.0    2.0  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.5e-13   47.1   0.0    1.5e-11   42.1   0.0    2.0  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.4e-13   46.6   0.1      1e-12   46.0   0.1    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.3e-12   44.7   0.0    4.7e-11   40.4   0.0    2.0  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.2e-12   43.3   0.0    6.2e-10   35.7   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.9e-12   43.4   0.0    4.9e-11   40.1   0.0    1.9  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.2e-12   42.7   0.0    4.1e-11   39.7   0.0    1.9  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.1e-11   39.9   0.0      9e-10   35.5   0.0    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.2e-11   40.5   0.0    1.4e-10   38.8   0.0    1.8  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.9e-11   39.9   0.0    4.4e-08   30.9   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-10   39.0   0.0    8.6e-09   32.9   0.0    2.1  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-10   38.8   0.0      1e-08   32.9   0.0    2.0  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.7e-10   38.7   0.3    8.8e-08   29.8   0.0    2.5  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.1e-10   37.4   0.0    2.6e-08   30.4   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.2e-10   38.5   0.2    1.6e-09   35.7   0.1    1.9  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.6e-10   38.0   0.1    4.8e-09   33.9   0.0    2.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.3e-10   37.6   0.0    4.4e-10   37.1   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.7e-10   36.4   0.0    5.4e-09   32.9   0.0    1.9  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.4e-09   35.2   0.0    2.2e-09   34.6   0.0    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.5e-09   35.5   0.0    3.6e-08   31.0   0.0    2.0  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.5e-09   35.4   0.0    1.7e-09   35.2   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      2e-09   34.7   0.0    2.2e-08   31.3   0.0    1.9  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.4e-09   33.8   0.0      1e-07   29.6   0.0    2.0  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.8e-09   33.1   0.0    1.7e-08   32.0   0.0    1.5  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.1e-08   30.3   0.0    5.9e-08   29.4   0.0    1.4  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.7e-08   30.2   0.0      1e-06   25.4   0.0    1.9  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.2e-08   30.1   0.0    5.6e-08   29.6   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    5.5e-08   30.6   0.0    3.4e-07   28.0   0.0    1.9  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    9.3e-08   28.8   0.0    4.6e-07   26.5   0.0    1.8  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.7e-08   29.3   0.0    1.8e-07   28.5   0.0    1.5  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    9.8e-08   29.2   0.1    2.3e-07   28.0   0.0    1.6  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.1e-07   28.7   0.0    3.6e-07   27.0   0.0    1.7  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.7e-07   26.9   0.0      2e-07   26.6   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.4e-07   26.4   0.0    2.4e-07   26.4   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.7e-07   27.4   0.0    2.1e-05   21.6   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.1e-06   25.2   0.0    1.4e-06   24.9   0.0    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.3e-06   25.0   0.0    3.5e-06   24.5   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.4e-06   23.7   0.0    2.4e-05   21.3   0.0    1.8  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.9e-05   20.0   0.0    7.5e-05   19.3   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.7e-05   19.1   0.0    8.3e-05   18.7   0.0    1.1  1  TIGR00630 uvra: excinuclease ABC subunit A
    9.2e-05   17.2   0.0     0.0001   17.1   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    0.00088   15.7   0.0     0.0011   15.5   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0022   13.4   0.0     0.0029   13.1   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0046   14.3   0.0      0.011   13.1   0.0    1.6  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   4.5e-25   3.3e-23     361     532 ..       2     175 ..       1     180 [. 0.89

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 4.5e-25
   TIGR03719 361 kstlfklitgkekpds.GelkiGetvklayvdqsr.dalddnktvweeisdGldllklgkvevnsrayvgrfnfkGad.qqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeed 532
                 kstl+kli+g  +p++ G++ +    ++ yv q++ ++ld+  t   ++ d     +  ++    r++++rf++ G+    +k++++sGG++ rv la  + +   +l+ldePtn ld+et  al  a+ +f G ++v+shd+++l   +  + a +  ++v+  + +++ y++d
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDAGARVEYVAQHQlEQLDPMGTPLSTLLDRYPGDSSTNHIQALRNHLARFGLGGKLfPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLLTTSCKELWAVHR-GQVQRLNYSFARYKKD 175
                 9***********99972589999999*****9976599****99999999988777777777778***********9625789****************************************************************99999998764.5788888888888876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.5   2.7e-21   1.9e-19      40     215 ..       2     162 ..       1     166 [. 0.84

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 2.7e-21
   TIGR03873  40 kstllrllaGllapdaG.evdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvel..ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                 kstl++l++Gll+p++G +v +++       +r+  +    +eq    ++pls     +l r P  s     s++  ++ ++ lar +l  + + +++++t+sGG++ rv la a+ ++P+ll+ldePtnhld+++  +l++++r+    +  v+v  hd  l ++ c ++  ++ G+v
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDA------GARVEYVAQHQLEQLDPMGTPLST----LLDRYPGDS-----STNHIQALRNHLARFGLggKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDF---KGGVLVVSHDQHLLTTSCKELWAVHRGQV 162
                 9*************9972444443......345544455568999999999985....799999544.....55667788899999988435799****************************************************...78899999***********9999888877 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021       1.5     361     392 ..       2      35 ..       1      41 [. 0.71
   2 !   55.6   0.0   1.3e-17   9.4e-16     457     522 ..      86     149 ..      63     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.021
   TIGR02857 361 KstllklllgfvepteG.ailv.ngaelaeldad 392
                 Kstl+kl++g+++p++G  +lv  ga ++ ++++
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVdAGARVEYVAQH 35 
                 9************987526777545555555544 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 1.3e-17
   TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                 + +SgGq+ R+ LA a++r  +ll+lDEPt hLD et  +++ a+r++  g  vl+v+H+++l++ 
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG--VLVVSHDQHLLTT 149
                 689********************************************8776..899*****98753 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0       0.1       7.4     357     379 ..       2      25 ..       1      40 [. 0.75
   2 !   54.3   0.0   2.5e-17   1.8e-15     453     533 ..      86     164 ..      76     170 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.1
   TIGR01842 357 kssLarllvGvwlpasG.svrlDg 379
                 ks+L +l+vG  +p++G  v +D+
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDA 25 
                 9**********9988752677774 PP

  == domain 2    score: 54.3 bits;  conditional E-value: 2.5e-17
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpslle.lvdkilvlkdGalka 533
                 +++sgGq+ R+ La a+y+ P+l++LDeP   LD e   al++a+ + k     v+v++h  +ll+ + +++  ++ G++++
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK---GGVLVVSHDQHLLTtSCKELWAVHRGQVQR 164
                 689*****************************************99886...679999999888761578889999999886 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0065      0.47      31      60 ..       2      33 ..       1      44 [. 0.79
   2 !   45.2   0.0   2.1e-14   1.5e-12     110     189 ..      68     146 ..      55     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0065
   TIGR01166 31 kstlllhlnGllrPks.Gkvlld.Geeldysr 60
                kstl++ + Gll P+  G vl+d G+ ++y  
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRgGDVLVDaGARVEYVA 33
                9*************862578876588898865 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.1e-14
   TIGR01166 110 ealaavdi..sgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                 + la  ++  + +  + +h++sgG+k rv +a+a+  rp++l+ldePt  ld + ++ l++++r ++     v++ +hd +l
  MMETSP1174-20130828|6253_1  68 NHLARFGLggKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG---GVLVVSHDQHL 146
                 5555544411458899*******************************************999998863...45566788665 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0      0.01      0.75      42      63 ..       2      24 ..       1      44 [. 0.75
   2 !   44.9   0.0   3.2e-14   2.3e-12     117     215 ..      64     161 ..      51     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.01
   TIGR00960 42 kstllklilgiekpsaG.kirvs 63
                kstl+kli+g  +p++G +++v 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                9**************96377774 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 3.2e-14
   TIGR00960 117 ervsaalekvGlkdka..kalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                 +  ++ l + Gl +k   ++   ++sgG++ rv++a a+ ++P+ll+ dePt  ld e++  ++  +++++     vlv +hd++l+ +  k +  +++G+
  MMETSP1174-20130828|6253_1  64 QALRNHLARFGLGGKLfpTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK---GGVLVVSHDQHLLTTSCKELWAVHRGQ 161
                 556677888899888522566689*************************************9999888886...368999*********999998888886 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0076      0.55     374     404 ..       2      34 ..       1      40 [. 0.71
   2 !   44.5   0.0   2.4e-14   1.7e-12     467     529 ..      83     143 ..      63     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0076
   TIGR02868 374 KstLlallaglldplk.Gevtld.gvsvaslse 404
                 KstL++l++gll p++ G+v++d g+ v  +++
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDaGARVEYVAQ 34 
                 9***********997626788873444544555 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 2.4e-14
   TIGR02868 467 eggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++ +++SGG++ R+ lA a+     +l+LDEPt hLD et ++l++++++ + g  v++v+h+
  MMETSP1174-20130828|6253_1  83 QKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG--VLVVSHD 143
                 455789******************************************998876..6777775 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0069      0.49      41      77 ..       2      40 ..       1      43 [. 0.81
   2 !   43.2   0.0     1e-13   7.4e-12     115     213 ..      63     160 ..      52     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0069
   TIGR02673 41 kttllklllgaekpsrG.evev.agedvarlrerelpll 77
                k+tl+kl++g ++p+rG +v v ag  v+ + +++l +l
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVdAGARVEYVAQHQLEQL 40
                9*************9963788734788888888888766 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 1e-13
   TIGR02673 115 qkrveevlelvgledkak..alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                  +  ++ l   gl  k    ++ +++sgG + Rv +a a+ ++P+ll+ DePt  lD e++  +++ +++++     v+v++hd++l+ ++ k +  +++g
  MMETSP1174-20130828|6253_1  63 IQALRNHLARFGLGGKLFptQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG---GVLVVSHDQHLLTTSCKELWAVHRG 160
                 4556777888888888752255679*************************************99998888753...68999*******9998888777766 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.2   1.6e+02      44      79 ..       2      39 ..       1      42 [. 0.67
   2 !   48.0   0.0   3.2e-15   2.3e-13     116     207 ..      60     149 ..      49     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 2.2
   TIGR02982 44 kttlltligglrsvqeG.elkv.lgkelkgasekelvq 79
                k tl+ li gl +   G ++ v  g++++ + +++l q
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVdAGARVEYVAQHQLEQ 39
                899****9999887765144442345577777777666 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.2e-15
   TIGR02982 116 keakakaeelleavgleerl..dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildv 207
                 +++ +  ++ l   gl+ +l   +k + +sgGqk rv +a a+  rP+l++ dePt  ld +++ ++v+ +++        +l+v hd+ +l  
  MMETSP1174-20130828|6253_1  60 TNHIQALRNHLARFGLGGKLfpTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRD----FKGGVLVVSHDQHLLTT 149
                 556677788999999999875567899*****************************************98875....56789******999865 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.8   4.1e+02      37      59 ..       2      25 ..       1      39 [. 0.65
   2 !   48.4   0.0   2.3e-15   1.7e-13     108     198 ..      59     148 ..      51     155 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 5.8
   TIGR03608 37 KstlLnil.gllekkdsgkvileg 59
                Kstl+ ++ gll     g+v+++ 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIvGLLTPNRGGDVLVDA 25
                899998652666666667776654 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 2.3e-15
   TIGR03608 108 kkekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                  +++ +++ ++l ++gl  +    +ki+++sgG+k Rv la ++ + ++l++ DEPt  LD ++ +++++ +++ k     +++v Hd+++  
  MMETSP1174-20130828|6253_1  59 STNHIQALRNHLARFGLggKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG---GVLVVSHDQHLLT 148
                 56788899999******6555669********************************************999988864...5889999998754 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0061      0.44     506     528 ..       2      25 ..       1      40 [. 0.82
   2 !   40.6   0.0   3.1e-13   2.2e-11     602     666 ..      86     148 ..      76     163 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0061
   TIGR03375 506 KstllklllglyepteG.svlldg 528
                 Kstl kl++gl++p++G  vl+d 
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDA 25 
                 9*************9852788884 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 3.1e-13
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                 + +SgGQ+  v la a+++ p++l+LDEPt++lD ++ + l+++++++  +  +++v+H ++lL+
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG--VLVVSHDQHLLT 148
                 579*******************************************99765..8999***99997 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.012      0.85      50      66 ..       2      18 ..       1      41 [. 0.82
   2 !   40.9   0.0     5e-13   3.6e-11     149     229 ..      86     162 ..      44     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.012
   TIGR02769 50 kstlarlllGlekPakG 66
                kstl +l++Gl  P++G
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRG 18
                9*************997 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 5e-13
   TIGR02769 149 rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 + +sGGq  r+++a a+  +P+l++lde    ldl    +++  ++++k      +l+++hd +l  + ++++  +++Gq+
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG----GVLVVSHDQHLLTTSCKELWAVHRGQV 162
                 679********************************999888877777653....4699*********************97 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.14        10      32      49 ..       2      19 ..       1      30 [. 0.86
   2 !   43.5   0.0     7e-14     5e-12     119     202 ..      82     162 ..      50     176 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.14
   TIGR01188 32 KtttikmLttllkPdsGt 49
                K+t+ik++ +ll+P+ G 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGG 19
                9*************9874 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 7e-14
   TIGR01188 119 dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGki 202
                  +k++t+sgG++ r+ la ++  +P++l LDEPt  LD +t +a+   i+++k     +l+ +h+ +   + + ++  +++G++
  MMETSP1174-20130828|6253_1  82 TQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG---GVLVVSHDQHLLTTSCKELWAVHRGQV 162
                 6899****************************************9999999975...699999999999999999999999987 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.19        13      40      71 ..       2      35 ..       1      45 [. 0.69
   2 !   43.3   0.0   8.4e-14   6.1e-12     106     211 ..      59     163 ..      52     172 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.19
   TIGR03864 40 kstLfslltrLyeake.geikv.aGldlrrapke 71
                kstL++l+ +L++ ++ g++ v aG+ ++  +++
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRgGDVLVdAGARVEYVAQH 35
                9*********998765157776456665555554 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 8.4e-14
   TIGR03864 106 raeaeerieealarlglaera..eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvl 211
                 +++  + ++++lar+gl  +   ++k+++++GG++ rv +a a+  +P+lL+lDe+t  LD+e+ +alv+++r+      l v    hl+    +  +l  +h+G+v+
  MMETSP1174-20130828|6253_1  59 STNHIQALRNHLARFGLGGKLfpTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK-GGVLVVSHDQHLLTT--SCKELWAVHRGQVQ 163
                 556667788999999**999644799***********************************************986.555666677777753..44567777777775 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.16        11      44      77 ..       2      37 ..       1      43 [. 0.76
   2 !   42.1   0.0     2e-13   1.5e-11     123     210 ..      67     152 ..      49     164 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.16
   TIGR02211 44 kstllhllggldkpts.Gevllk.Gkelsklssner 77
                kstl+ l+ gl +p   G+vl++ G +++ +++++ 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRgGDVLVDaGARVEYVAQHQL 37
                9***********998725788743777777776665 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 2e-13
   TIGR02211 123 kellekvglekri..nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldr 210
                  + l ++gl  ++  ++k   +sGG++ rv +a a+  +P+l++ dePt +ld +t++++ + ++++    + ++lvv+hd++l     +
  MMETSP1174-20130828|6253_1  67 RNHLARFGLGGKLfpTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDF----KGGVLVVSHDQHLLTTSCK 152
                 566788888888755789999*************************************988888665....6789*******99865444 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   1.4e-14     1e-12      39     195 ..       2     153 ..       1     155 [. 0.81

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.4e-14
   TIGR01189  39 KttLLRilaGLlkpes.GevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.seqktveealekvgLsg..ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlglkeare 195
                 K+tL++++ GLl+p+  G v ++  +    r e+  + + l  ld + + Ls+l  L+ y  +++ ++ +++ + l++ gL g  +    ++++s Gqk R+ la  +  +  l iLDEPt  lD e+++ l +++++   +gG+ +++  q+l +++ +e
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDAGA----RVEY-VAQHQLEQLDPMGTPLSTL--LDRYPGDSStNHIQALRNHLARFGLGGklFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDF--KGGVLVVSHDQHLLTTSCKE 153
                 99**********99862688888444....3233.4567789999999999998..6666666651455599*********874367899**********************************************996..78888888778777666665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.23        16      41      75 ..       2      38 ..       1      44 [. 0.72
   2 !   40.4   0.0   6.5e-13   4.7e-11     124     222 ..      63     160 ..      43     169 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.23
   TIGR02315 41 kstllrsinrlveissg.sille.gkevtklkkkelr 75
                kstl++ i +l ++++g ++l++ g  v+ + +++l+
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVDaGARVEYVAQHQLE 38
                9**********99887537776524556666666665 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 6.5e-13
   TIGR02315 124 ekAl.elLervglael..aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkag 222
                  +Al + L+r+gl  +   +++  ++sGGq+ Rv +a a+ ++p+l++ DEP+  LD +++  ++ ++++        v+v  H+ +l +  ++ + +++ g
  MMETSP1174-20130828|6253_1  63 IQALrNHLARFGLGGKlfPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG----GVLVVSHDQHLLTTSCKELWAVHRG 160
                 444425789999976522589******************************************9999988632....3444446656655556655555555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01      0.75     518     546 ..       2      31 ..       1      40 [. 0.76
   2 !   35.7   0.0   8.6e-12   6.2e-10     615     689 ..      87     162 ..      81     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.01
   TIGR03796 518 kstiaklvaGlyepws.GeilfDgkpreei 546
                 kst+ kl+ Gl +p + G++l+D   r e+
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDAGARVEY 31 
                 9************98626899997666554 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 8.6e-12
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLsti.RdcdeiivlerGkv 689
                  +sGGq+ R+ +A a+ ++P +LilDE t  LD et  a++ ++r     +++v+H    +   c e+  + rG+v
  MMETSP1174-20130828|6253_1  87 TMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLLtTSCKELWAVHRGQV 162
                 68*****************************************************964433147888888888887 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.44        32       9      30 ..       2      24 ..       1      38 [. 0.73
   2 !   40.1   0.0   6.7e-13   4.9e-11      95     182 ..      82     165 ..      67     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.44
   TIGR01187  9 kttlLrllaGleeldsG.killd 30
                k+tl++l+ Gl +++ G  +l+d
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                99***********9986256666 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 6.7e-13
   TIGR01187  95 krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqi 182
                 ++k++ +sGGq+ rv la a+  +P++L+lDep   LD +  d + + +++++      v++v hDq+   t    +  +++G++++ 
  MMETSP1174-20130828|6253_1  82 TQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG----GVLVVSHDQHLLTTSCKELWAVHRGQVQRL 165
                 689**************************************9999988888875....357899***988888888888888877665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.28        20     520     547 ..       2      30 ..       1      40 [. 0.78
   2 !   39.7   0.0   5.7e-13   4.1e-11     616     693 ..      86     164 ..      82     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.28
   TIGR00958 520 KStvaallenlYqPt.gGqvllDgkplke 547
                 KSt + l+  l  P+ gG+vl+D    +e
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNrGGDVLVDAGARVE 30 
                 9*************84689****654444 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 5.7e-13
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstv.ekadkilvlkkgsvve 693
                 + +sgGqk r+ +A A+ r+P +LiLDe t  LD e+  +l +  +  +  vl++ h  ++    +++   +++g+v++
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLLtTSCKELWAVHRGQVQR 164
                 579********************************88887777666666688888887776515688888999999886 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11       7.8     492     513 ..       2      24 ..       1      39 [. 0.80
   2 !   35.5   0.0   1.3e-11     9e-10     587     644 ..      86     143 ..      80     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.11
   TIGR03797 492 KStllrlLLgFekPesG.svlyD 513
                 KStl++l++g  +P+ G  vl D
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVD 24 
                 9*************986257766 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 1.3e-11
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHR 644
                 +t+SGGQ+ R+ +A a+ r+P++l++DE T  LD +t  + + ++  +k   +v+ H 
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHD 143
                 79***********************************999999************995 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.8   1.3e+02      43      60 ..       2      19 ..       1      34 [. 0.83
   2 !   38.8   0.0   1.9e-12   1.4e-10     131     197 ..      80     146 ..      54     173 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.8
   TIGR03265 43 kttLLriiaGLekqdaGa 60
                k+tL+++i GL ++++G 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGG 19
                89*********9998873 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 1.9e-12
   TIGR03265 131 yPgq....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqee 197
                 +P+q    +sGGq+ rv La a+  +P+lL+LDeP   LD    + L + +++++  +    ++v hdq  
  MMETSP1174-20130828|6253_1  80 FPTQkihtMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGV----LVVSHDQHL 146
                 666555559*******************************************987654....678999975 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0099      0.71      39      60 ..       2      24 ..       1      43 [. 0.82
   2 !   30.9   0.0   6.1e-10   4.4e-08     120     185 ..      83     148 ..      64     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0099
   TIGR03740 39 kstllklltGllrktsG.eilld 60
                kstl+kl++Gll+++ G ++l+d
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                9************9875266666 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.1e-10
   TIGR03740 120 kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshils 185
                 +k + +s G k r+ +a a+ ++P+llildePtn ld    + l   i+ f+   + v    h+l+
  MMETSP1174-20130828|6253_1  83 QKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLLT 148
                 57788999*******************************************876666666667764 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.065       4.7      36      53 ..       2      19 ..       1      36 [. 0.79
   2 !   32.9   0.0   1.2e-10   8.6e-09     128     211 ..      84     163 ..      73     170 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.065
   TIGR02142 36 ktslirliaGLtrpdege 53
                k++li+li GL++p++g 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGG 19
                99************9873 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.2e-10
   TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvk 211
                 + +++sGG k Rv ++ A+  +P+LL++DeP   LD +  + ++  +    +++k  +l vsH+ + ++    ++  ++ G+v+
  MMETSP1174-20130828|6253_1  84 KIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAI----RDFKGGVLVVSHDQHLLTTSCKELWAVHRGQVQ 163
                 56789*********************************999987655....567788999***999999888888888888886 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.082       5.9      24      44 ..       2      22 ..       1      35 [. 0.84
   2 !   32.9   0.0   1.4e-10     1e-08      95     174 ..      66     143 ..      52     166 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.082
   TIGR01184 24 kstllnliaglekptsgavil 44
                kstl+ li gl  p  g+ +l
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGGDVL 22
                9**************998444 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.4e-10
   TIGR01184  95 veehielvglre..aadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 +++h++  gl       ++++ +sgg k rv +a a+  rp+ll+ldep   ld  t +     l+  +++ +  vl+v+hd
  MMETSP1174-20130828|6253_1  66 LRNHLARFGLGGklFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTD----ALVTAIRDFKGGVLVVSHD 143
                 56666666664311357899**********************************87765....5677778888888888888 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.017       1.2      37      58 ..       2      24 ..       1      51 [. 0.82
   2 ?   -0.7   0.0       2.7     2e+02     102     141 ..      30      72 ..      19      79 .. 0.64
   3 !   29.8   0.0   1.2e-09   8.8e-08     128     210 ..      87     165 ..      73     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.017
   TIGR01277 37 kstllnliaGflepasG.eikvn 58
                kstl++li G+l+p +G ++ v+
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                9*************986255555 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.7
   TIGR01277 102 navqkekvedva.rqvGiadylerlpeelsGGqrq..rvalar 141
                 + v ++++e++      ++ +l+r p++ s    q  r  lar
  MMETSP1174-20130828|6253_1  30 EYVAQHQLEQLDpMGTPLSTLLDRYPGDSSTNHIQalRNHLAR 72 
                 5556666666541334578899999998887644422555555 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 1.2e-09
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  +sGGq+ rv la  + r   +l+ldep   ld    + +++ ++    + k  +l+v+h+ + ++++ ++   v+ G+++ l
  MMETSP1174-20130828|6253_1  87 TMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIR----DFKGGVLVVSHDQHLLTTSCKELWAVHRGQVQRL 165
                 69*******************************887765555444....4567899***********************9876 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.017       1.2     496     518 ..       2      25 ..       1      41 [. 0.88
   2 !   30.4   0.0   3.6e-10   2.6e-08     592     669 ..      86     162 ..      80     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.017
   TIGR01846 496 kstltkllqrlyvPekG.rvlvdg 518
                 kstl kl+  l +P++G  vlvd 
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDA 25 
                 9**************9538***95 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 3.6e-10
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGki 669
                  ++sGGq+ r+ la a+   P++lilde t  ld e+ +++   +r+   g  v++    l t  +++++  +++G++
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLLT-TSCKELWAVHRGQV 162
                 579********************************************9988777776555554.46888888888887 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   2.2e-11   1.6e-09      90     182 ..      62     153 ..       1     164 [. 0.72

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.2e-11
   TIGR03771  90 dfaavadalervklt..eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdr 182
                   +a ++ l r  l    +  + +  +sGGq+ rv +a a+  +p+ll+ldep   ldl +++ lv  ++++ g    +l+++hd     ++c+ 
  MMETSP1174-20130828|6253_1  62 HIQALRNHLARFGLGgkLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG---GVLVVSHDQHLLTTSCKE 153
                 5566677777776642134578899**************************************99988877755...577777876666666655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.42        30      39      58 ..       2      21 ..       1      39 [. 0.79
   2 ?   -1.6   0.0       4.5   3.3e+02     120     137 ..      47      64 ..      28      75 .. 0.68
   3 !   33.9   0.0   6.6e-11   4.8e-09     129     213 ..      86     166 ..      52     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.42
   TIGR00968 39 kstllrviaGlekpdsGril 58
                kstl+++i Gl  p+ G  +
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGGDV 21
                9**********999987544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 4.5
   TIGR00968 120 leklgdrypsqlsGGqrq 137
                 l+ l dryp + s    q
  MMETSP1174-20130828|6253_1  47 LSTLLDRYPGDSSTNHIQ 64 
                 778889999887776544 PP

  == domain 3    score: 33.9 bits;  conditional E-value: 6.6e-11
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvg 213
                   +sGGq+ rv la a+   p++l+ldep   ld +  + l + +r ++  v    ++v+hdq+  +   +++  +++G++++++
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGV----LVVSHDQHLLTTSCKELWAVHRGQVQRLN 166
                 358*******************************************998877....5689*****99999***999999998875 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   6.1e-12   4.4e-10     142     202 ..      85     143 ..      78     166 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 6.1e-12
   TIGR00972 142 alsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthn 202
                   ++sGGq+ r+c+a a+  +P++l+lDePt  LD ++t  +   i++ k    +++v h+
  MMETSP1174-20130828|6253_1  85 IHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG--VLVVSHD 143
                 5689*******************************************99975..5666776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.25        18     323     346 ..       2      26 ..       1      39 [. 0.79
   2 !   32.9   0.0   7.5e-11   5.4e-09     425     505 ..      85     161 ..      79     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.25
   TIGR03269 323 kttlskilaGvleptsG.evevrvG 346
                 k+tl k+++G+l p +G +v v  G
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDAG 26 
                 89************98626666655 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 7.5e-11
   TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGk 505
                  +++s G++ rv la  + + p+++ildept  +d  t    +++++ a ++++   ++vshd  ++++ c     +  G+
  MMETSP1174-20130828|6253_1  85 IHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLET----TDALVTAIRDFKGGVLVVSHDQHLLTTSCKELWAVHRGQ 161
                 589*******************************9766....566777778999999********9999998766655555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0     3e-11   2.2e-09      43     179 ..       2     131 ..       1     155 [. 0.77

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3e-11
   TIGR01288  43 kstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfgls.treieevipsllefarlesk..advrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlr 179
                 kst+ +l++gl +p++g   ++++        ar++     q+++ld+  t    ll   ry g s t +i++    l  f  l  k     ++ ++sgg k r+ la+a+   p+llildept  ld  +   +   +r
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGGDVLVDAG-------ARVEYVAQHQLEQLDPMGTPLSTLL--DRYPGDSsTNHIQALRNHLARFG-LGGKlfPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIR 131
                 89**************987666543.......4555556678889999888888887..79998661566666666666665.666622467899*********************************877666555555 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.24        17      39      60 ..       2      24 ..       1      39 [. 0.71
   2 !   31.0   0.0     5e-10   3.6e-08     131     212 ..      87     164 ..      75     178 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.24
   TIGR03410 39 kttllkalvgllkvksG.eiele 60
                k+tl+k +vgll+ ++G  + ++
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                9*********9877665155554 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5e-10
   TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevva 212
                  +sGGq+  + +a a+  +P+ll+LDePt+ +     + + ++i++ +     ++l+v +  ++ ++  ++++ ++rG+v  
  MMETSP1174-20130828|6253_1  87 TMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG----GVLVVSHDQHLLTTSCKELWAVHRGQVQR 164
                 69******************************98777777666666654....78888888888999999999*****9975 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.4e-11   1.7e-09     123     204 ..      85     162 ..      27     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.4e-11
   TIGR02770 123 pfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  + +sGG   Rv +a a+  ++ lli DePt  lD+ +   ++  +    +++  g+l+++hD   ++   +e+  +++G++
  MMETSP1174-20130828|6253_1  85 IHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAI----RDFKGGVLVVSHDQHLLTTSCKELWAVHRGQV 162
                 589********************************99887666555....45678*******************99999997 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.36        26      44      66 ..       2      25 ..       1      40 [. 0.69
   2 !   31.3   0.0     3e-10   2.2e-08     123     218 ..      68     161 ..      50     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.36
   TIGR02314 44 kstlircvnllekp.tsgavivdg 66
                kstli+ +  l +p   g+v+vd 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPnRGGDVLVDA 25
                9****97655555515689***95 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 3e-10
   TIGR02314 123 ellalvglsdkk..dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkge 218
                 + la  gl+ k         +sggqk rv +a a+   p++l+ de t  ld  tt ++++ +++        +l+++h+ +++   c+e+  +++g+
  MMETSP1174-20130828|6253_1  68 NHLARFGLGGKLfpTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK----GGVLVVSHDQHLLTTSCKELWAVHRGQ 161
                 556677777774113334579*************************************999987765....568999*****9999999998888886 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.24        18      41      62 ..       2      24 ..       1      44 [. 0.79
   2 !   29.6   0.0   1.4e-09     1e-07     114     173 ..      66     127 ..      53     166 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.24
   TIGR03522 41 kstlmkiltgylkadsG.svava 62
                kstl+k++ g l+++ G  v v+
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                9***********99865156665 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.4e-09
   TIGR03522 114 veelielvGlkaeqh..kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveir 173
                 +++ +++ Gl  + +  +ki  +s G + rv la a+   P++lildePt  ld +   ++ 
  MMETSP1174-20130828|6253_1  66 LRNHLARFGLGGKLFptQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALV 127
                 556677777777654338***********************************976544333 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.4   3.9e+02      47      78 ..       2      33 ..       1      41 [. 0.68
   2 !   32.0   0.0   2.3e-10   1.7e-08     125     197 ..      62     135 ..      48     158 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5.4
   TIGR02324 47 kstllkslyanYlpesgrilvrhegeivdlvk 78
                kstl+k + +   p+ g  ++   g+ v+ v+
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGGDVLVDAGARVEYVA 33
                89999999998888866555555577776554 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.3e-10
   TIGR02324 125 arakakellarlniperLWsla.PatfsGGekqRvniaraliadrPiLL.LdePtasLdaanrkvvvelikeaka 197
                   ++ ++ lar+ +  +L+      t sGG k Rv +a a+   rP LL LdePt  Ld  + ++ v  i++ k 
  MMETSP1174-20130828|6253_1  62 HIQALRNHLARFGLGGKLFPTQkIHTMSGGQKCRVCLASAMYR-RPHLLiLDEPTNHLDLETTDALVTAIRDFKG 135
                 4566788999********9875158*****************9.7765439**********99999999988763 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         5   3.6e+02     492     523 ..       2      34 ..       2      36 .. 0.79
   2 !   29.4   0.0   8.2e-10   5.9e-08     583     643 ..      87     147 ..      82     161 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5
   TIGR00954 492 KsslfR.ilgelWPvygglltkpeegklFyvPq 523
                 Ks l + i+g l P +gg   +++  ++ yv q
  MMETSP1174-20130828|6253_1   2 KSTLIKlIVGLLTPNRGGDVLVDAGARVEYVAQ 34 
                 677766256677899999999999999999988 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 8.2e-10
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                  +sgG+k R+ +A  +y +P+  +LDE t+ + ++  d+l  ++++++  +l vsh + L+
  MMETSP1174-20130828|6253_1  87 TMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGGVLVVSHDQHLL 147
                 68******************************************************98876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.083         6     513     548 ..       2      39 ..       1      44 [. 0.79
   2 !   25.4   0.0   1.4e-08     1e-06     597     670 ..      73     145 ..      58     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.083
   TIGR01193 513 kstlakllvkffqaes.Geilln.gkslkdidkhelrq 548
                 kstl+kl+v++  ++  G++l++ g  ++ + +h+l q
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDaGARVEYVAQHQLEQ 39 
                 9***********87651677775367889999999877 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.4e-08
   TIGR01193 597 lplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrls 670
                 + lG +   +++  ++sgGqk r++la a+    ++lilde t +ldl t   +v  +  +k   ++ v+h  +
  MMETSP1174-20130828|6253_1  73 FGLGGKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG-GVLVVSHDQH 145
                 555555555667789***********************************9999999888854.4555666544 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   7.8e-10   5.6e-08     163     211 ..      84     132 ..      79     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 7.8e-10
   TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkk 211
                 +++++SgG++ R+ las +   P+lL++DEPT  LD  +   +v ++++
  MMETSP1174-20130828|6253_1  84 KIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRD 132
                 57899*******************************9999999998887 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1        78      41      62 ..       2      24 ..       1      41 [. 0.72
   2 !   28.0   0.0   4.7e-09   3.4e-07     138     220 ..      82     162 ..      48     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.1
   TIGR03411 41 kttllDvitGktrpdeG.svlfk 62
                k+tl+ +i+G   p++G +vl++
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVD 24
                99*********999986155544 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.7e-09
   TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkv 220
                 ++k  ++s Gqk ++ ++  + ++p+ll+lDeP+  +  e t+     +++ +    v+vv hD + + +  +++  +h+G+v
  MMETSP1174-20130828|6253_1  82 TQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK--GGVLVVSHDQHLLTTSCKELWAVHRGQV 162
                 5677899***************************9887666555555555544..479***********************98 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.67        48     372     396 ..       2      27 ..       1      41 [. 0.75
   2 !   26.5   0.0   6.3e-09   4.6e-07     469     516 ..      86     133 ..      73     151 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.67
   TIGR02203 372 kstlvnllpRFyepds.GeillDgvd 396
                 kstl++l+   + p++ G++l+D  +
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDAGA 27 
                 9*********9999862689988644 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 6.3e-09
   TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl 516
                   +sGGq+ R+ +a a+++   +LiLDe t  LD e   ++  a+  +
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDF 133
                 679*********************************987777776655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.5e-09   1.8e-07     143     193 ..      80     134 ..      57     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.5e-09
   TIGR03005 143 lpaq....lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrla 193
                 +p+q    +sGGqk rv +a a+  rp++l++de+t  ld e  + +++ +r++ 
  MMETSP1174-20130828|6253_1  80 FPTQkihtMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFK 134
                 444433338************************************9999999864 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.6   1.9e+02      47      68 ..       2      24 ..       1      38 [. 0.75
   2 !   28.0   0.0   3.3e-09   2.3e-07     136     217 ..      85     161 ..      61     176 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.6
   TIGR03258 47 kttllravaGfvkad.GGrllva 68
                k+tl++++ G++ ++ GG +lv 
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNrGGDVLVD 24
                8999******9998736888773 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3.3e-09
   TIGR03258 136 paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGs 217
                  + +sGGq+ rv la a+  rp++l+ldep   ld +   ++v  ++ ++       vl+v+hd++   +    +  ++ G+
  MMETSP1174-20130828|6253_1  85 IHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKG-----GVLVVSHDQHLLTTSCKELWAVHRGQ 161
                 4779***********************************999999987754.....68888898875555555555555555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2        86     379     405 ..       2      30 ..       1      40 [. 0.74
   2 !   27.0   0.0     5e-09   3.6e-07     475     533 ..      86     142 ..      67     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.2
   TIGR02204 379 kstllelllrfydPqsG.ailld.Gvdlr 405
                 kstl++l+     P++G  +l+d G  + 
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGgDVLVDaGARVE 30 
                 9*************885378888455555 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 5e-09
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah 533
                  t+sGGqk r+ +a a+ +   +L+Lde t+ Ld e+ +++ +a+     g   lv++h
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG--VLVVSH 142
                 689**********************************99999999876544..455555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.8e-09     2e-07    1421    1479 ..      87     143 ..      82     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.8e-09
   TIGR00957 1421 nlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahr 1479
                   +s gq+  vcla a+ r+ ++l+lde t  +dlet + + ++ir  f+   vl ++h 
  MMETSP1174-20130828|6253_1   87 TMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRD-FK-GGVLVVSHD 143 
                  5799********************************9999999996.43.345666654 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.3e-09   2.4e-07     465     611 ..       2     146 ..       1     171 [. 0.66

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.3e-09
   TIGR01271 465 kssllmmilgelepsegk...ikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacq.leediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehl 611
                 ks+l+ +i+g l p  g    +    r+ + +q        +     +    d y   s  +  q l + +a +    k+  ++   t+sggq++r++la a+y+   l +ld p ++ld+ t   +    +  +   k  +lv s+ +hl
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRGGdvlVDAGARVEYVAQHQLEQLDPMGTP--LSTLLDRYPGDSSTNHIQaLRNHLARFGLGGKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDAL----VTAIRDFKGGVLVVSHDQHL 146
                 566666666666666543222444556666665543322222221..2233466666666666554778888888888888888889**********************************987554....34444555666666665555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.069         5      32      65 ..       2      37 ..       1      41 [. 0.76
   2 !   21.6   0.0     3e-07   2.1e-05     121     189 ..      79     143 ..      57     147 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.069
   TIGR01186 32 kstlvrllnrliePtaG.kilid.Gediaeisdael 65
                kstl++l+  l+ P +G  +l+d G  +  + + +l
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVDaGARVEYVAQHQL 37
                9*************9853899994555555555555 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3e-07
   TIGR01186 121 eyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  +  +  + +sGG++ rv la a+   P ll++de+   ld  + d l   +    ++ +  ++ ++hd
  MMETSP1174-20130828|6253_1  79 LFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAI----RDFKGGVLVVSHD 143
                 466777899********************************76665554444....4444455555555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.9e-08   1.4e-06     137     190 ..      83     136 ..      58     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.9e-08
   TIGR02633 137 rpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkak 190
                 + +  + +Gq+  v +a a+ ++ +llildep+  l  + t+ l+  ird+k  
  MMETSP1174-20130828|6253_1  83 QKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDFKGG 136
                 446677788888888888888888888888888888888888888888888753 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.8e-08   3.5e-06     122     209 ..      65     149 ..      55     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 4.8e-08
   TIGR01978 122 llkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllel 209
                  l+++l+ + l  +l   +  +  sGG k r  +   +  +P+l iLDe    lD+++  ++++ + ++   + ++l+++h ++ll +
  MMETSP1174-20130828|6253_1  65 ALRNHLARFGLGGKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRDF---KGGVLVVSHDQHLLTT 149
                 556666666666655555555679********************************9999887777666...579*********9975 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.85        61      63      96 ..       2      36 ..       1      46 [. 0.69
   2 !   21.3   0.0   3.4e-07   2.4e-05     159     224 ..      82     143 ..      58     149 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.85
   TIGR03415 63 kssllravnglnpvsrG.kvlvkdedkevdvakcd 96
                ks+l++ + gl +  rG +vlv  + +   va+ +
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGgDVLVDAGARVEYVAQHQ 36
                9*********9999987256666655554455444 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.4e-07
   TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 ++k++ +sGG + rv la a+     +l++deP   ld     +  d l++  + +k  ++ vshd
  MMETSP1174-20130828|6253_1  82 TQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDL----ETTDALVTAIRDFKGGVLVVSHD 143
                 7899*********************************94....668999**9*************9 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-06   7.5e-05     470     514 ..      86     130 ..      79     148 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1e-06
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdai 514
                   +sgg++ r+ +a a+ +   +l+lde t  ld+et   +  ai
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAI 130
                 569*********************************976655555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-06   8.3e-05     479     552 ..      79     147 ..      58     152 .. 0.53

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.2e-06
   TIGR00630 479 LsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeeti 552
                 L + ++++t+sGG + r+ la+ +  +    l +lDeP   L    ++ L++++   rd    ++vv hD++ +
  MMETSP1174-20130828|6253_1  79 LFPTQKIHTMSGGQKCRVCLASAMYRR--PHLLILDEPTNHLDLETTDALVTAI---RDFKGGVLVVSHDQHLL 147
                 444555556666666666666555443..3455566665555555555555433...34444555566655544 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06    0.0001    2057    2151 ..      74     165 ..      35     176 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.4e-06
   TIGR01257 2057 slglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregr.avvltshsmeecealctrlaimvkgafqcl 2151
                   lg  l+  +   t sgg+k ++  a a+   p l++ldept  +d ++       +v+ ir+ +  v++ sh      + c  l  + +g +q l
  MMETSP1174-20130828|6253_1   74 GLGGKLFPTQKIHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDA----LVTAIRDFKgGVLVVSHDQHLLTTSCKELWAVHRGQVQRL 165 
                  5788899999999*********************************998755....5667777661466689999999999998888888877755 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-05    0.0011     380     530 ..       2     144 ..       1     160 [. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-05
   TIGR01194 380 kstliklllGlyipqe.Gellld.GeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishdd 530
                 kstlikl++Gl  p+  G++l+d G+ v   ++ +  +l         l+d+  +  +     ++  +++l r++l  k+   +  ++    +s Gq+ r+ l +a      +l+lde +   d      + +  + d+k     +lv+shd+
  MMETSP1174-20130828|6253_1   2 KSTLIKLIVGLLTPNRgGDVLVDaGARVEYVAQHQLEQLDPMGTPLSTLLDRYPG--DSSTNHIQALRNHLARFGLGGKLFPTQKIHT----MSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTA-IRDFK---GGVLVVSHDQ 144
                 9*************87268999857888888999999997777777789999877..67777899999**********9987776665....9*************998777999**98887776554444332.23333...3466666665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     4e-05    0.0029     207     254 ..      85     132 ..      79     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-05
   TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkt 254
                 +  +sGG++ Rv +a ++  +++++++D+ t  LD  t+  +v a++ 
  MMETSP1174-20130828|6253_1  85 IHTMSGGQKCRVCLASAMYRRPHLLILDEPTNHLDLETTDALVTAIRD 132
                 56789******************************9999999999985 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.8   3.4e+02      40      58 ..       2      20 ..       1      38 [. 0.75
   2 !   13.1   0.0   0.00015     0.011     140     216 ..      86     162 ..      62     167 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 4.8
   TIGR02323 40 kstllkalaarlladaGev 58
                kstl+k + + l++++G  
  MMETSP1174-20130828|6253_1  2 KSTLIKLIVGLLTPNRGGD 20
                8999999999999998754 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00015
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrv 216
                 +++sGG + r+ +a ++  rp+l+++ ept  l +      l+  + +r+++  v++v+h   +    ++ l  +++G+v
  MMETSP1174-20130828|6253_1  86 HTMSGGQKCRVCLASAMYRRPHLLILdEPTNHLdLETTD-ALV--TAIRDFKGGVLVVSHdQHLLTTSCKELWAVHRGQV 162
                 689*******************99999***999443333.332..45778888888888855555555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 398.17
//
Query:       MMETSP1174-20130828|6255_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 183.84
//
Query:       MMETSP1174-20130828|6262_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|6261_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|6256_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-31  106.6   9.3    2.6e-16   57.6   2.3    2.1  2  TIGR00601 rad23: UV excision repair protein Rad23
    0.00082   16.5   0.0       0.38    7.7   0.0    2.1  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.2   3.9e-18     8e-15       1      69 [.      10      75 ..      10      81 .. 0.94
   2 !   57.6   2.3   1.3e-19   2.6e-16       1     128 [.      86     208 ..      86     258 .. 0.79

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 3.9e-18
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1174-20130828|6256_1 10 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 75
                8999*******************************...**************************98765 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 1.3e-19
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeea 128
                 +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  + +++      + k++ P    e+ +++   + p+s  + +++ P   v++ ++  e +
  MMETSP1174-20130828|6256_1  86 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGASLKVERPLNDDETKTEAEA-PSPVS-VNGTAEEPQNNVSDATPNLERS 208
                 8999*******************************...**************************99998877777666666688888877776666553.34444.4455666777777776665544 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00019      0.38      82     145 ..      31      91 ..       8     103 .. 0.80
   2 !    6.6   0.0   0.00039       0.8      83     133 ..     108     157 ..      99     171 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00019
   TIGR03819  82 GleradvkfedeeevrrLavRlaaaagrrLDdaepvvDarlpdgvRlhavLppvaaegtllslR 145
                  +e++++k++d+e +    +Rl+  ag++L+d++ ++D ++++   lh vL    + g  + ++
  MMETSP1174-20130828|6256_1  31 TIENVKTKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVLRL--RGGMQIFVK 91 
                 56788889999999999999997.589***********************974..445555555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00039
   TIGR03819  83 leradvkfedeeevrrLavRlaaaagrrLDdaepvvDarlpdgvRlhavLp 133
                 +e++++k++d+e +    +Rl+  ag++L+d++ ++D ++++   lh vL 
  MMETSP1174-20130828|6256_1 108 IENVKTKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVLR 157
                 6778888899999999999997.589**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1075.32
//
Query:       MMETSP1174-20130828|6263_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 882.44
//
Query:       MMETSP1174-20130828|6259_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 1108.09
//
Query:       MMETSP1174-20130828|6265_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-38  127.7   0.0    1.6e-36  123.7   0.0    2.0  1  TIGR00041 DTMP_kinase: thymidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   3.9e-40   1.6e-36       3     196 .]      43     243 ..      41     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 3.9e-40
   TIGR00041   3 kgkfiviEGidGaGKTtqlellkkllke......eg.........lkvlltrEPggtklgekirelllteneepleekaealLFaadRaehveekikpalaegklvisDRylfSslAYqglarkididlvlelnekalqlkPdlvilLdidpevalerlskrgeldreelekldflekvrekyleladk.ekkivvvdaenkveeveeki 196
                 +g fi++EG+d+ GKTtq+++l+++l +       g         +++l+ ++ + t +g++i+ +    n   ++++a++lLF+a+R ++++ ki+  l  g+ +++DRy +S++A++g++++    + +++  +     Pd vi+Ld+ +e+a++r  ++ge   e++ek +f+++v +++ ++++      +vvda++++ e++++i
  MMETSP1174-20130828|6265_1  43 RGAFILLEGVDRCGKTTQTKMLADTLSAarhaapSGaiddqnmppRATLMRFPDRTTTIGQMINGY--LANGVDMDDRAIHLLFSANR-WEARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKEG--LSVEWCMAPDRGLPCPDCVIYLDLSVEDAMQRG-AFGE---ERYEKEEFQRRVSDNFKAIMASdSTPWHVVDATKSIAEMQAEI 243
                 689*********************9987443332112222222224678889999***********..6677888999**********.*******************************7775..555556666555555*****************6.5666...69*******************98999*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 991.80
//
Query:       MMETSP1174-20130828|6266_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|6267_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 319.33
//
Query:       MMETSP1174-20130828|6268_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 624.41
//
Query:       MMETSP1174-20130828|6269_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|6271_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1137.44
//
Query:       MMETSP1174-20130828|6270_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1682.86
//
Query:       MMETSP1174-20130828|6273_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|6274_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 719.94
//
Query:       MMETSP1174-20130828|6277_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|6285_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:01.04
# Mc/sec: 106.61
//
Query:       MMETSP1174-20130828|6283_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1174-20130828|6284_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    5.9   9.9        0.2    9.4   1.3    2.8  2  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3     5e-05       0.2      24      64 ..      41      83 ..      39      88 .. 0.92
   2 ?   -0.4   0.9     0.055   2.3e+02      30      61 ..     163     195 ..     155     230 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5e-05
   TIGR03750 24 vvaavvglvlglvlglllalllg..swaliptgallgvilvvl 64
                +++ +vg+++g+ +g+ ++ll+g  +w+++ +g+l+++++v +
  MMETSP1174-20130828|6284_1 41 WAISGVGVIAGIWIGAGMYLLTGsyQWSMASSGILVAPAVVTT 83
                78999******************999************98755 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.055
   TIGR03750  30 glvlglvlglllal.llgswaliptgallgvil 61 
                 +++ +++l++ll+   +g+   +  g+  ++i+
  MMETSP1174-20130828|6284_1 163 SMMSFALLSALLLStWFGPSFGFAEGISALCIV 195
                 444444444333320222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.47
# Mc/sec: 864.95
//
Query:       MMETSP1174-20130828|6288_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|6291_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 779.94
//
Query:       MMETSP1174-20130828|6298_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|6292_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 505.20
//
Query:       MMETSP1174-20130828|6303_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   10.7   4.8      0.046   10.4   3.4    1.1  1  TIGR00634 recN: DNA repair protein RecN
       0.08    9.2   9.0      0.084    9.2   6.2    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.096    8.1   9.9       0.11    8.0   6.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.4   3.4e-05     0.046     219     314 ..      11     114 ..       4     119 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.4e-05
   TIGR00634 219 eklseleklkelaqealaaLse........dadvqesalleslaearaelaseidaslkelaekveealteveeatrelreyldeleadperlneieerlaeik 314
                 ekls+le+l  la   + +  +          + q++ +      +r +  +    +l++l ++++ a  ++ e t+++re+  +++  +e l ++++r++++ 
  MMETSP1174-20130828|6303_1  11 EKLSQLEELMALALADNRKSANgtdkepvrISTNQDEEVALPTDMIRRQIFELKRIELENLENEIDAASKHIAESTENVREEEGNIKRSKESLCSMQQRVSRLD 114
                 45566665555443322222221212222112233333333344455555555778999999999999999999999999999999999999999999999875 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.2   6.1e-05     0.084      19     128 ..       5     118 ..       1     120 [] 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 6.1e-05
   TIGR03319  19 akkiaekkleeaeeeakkiieeakkeaeakkkeall...eakeevkklreeleke.lkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeele 128
                 +k+  ++kl++ ee     + + +k a+ + ke +    ++ eev   ++ + ++ ++ +r el++le+ ++  ++++++ +e+++++e ++++++++l + ++++++ +e+++
  MMETSP1174-20130828|6303_1   5 EKHDLNEKLSQLEELMALALADNRKSANGTDKEPVRistNQDEEVALPTDMIRRQiFELKRIELENLENEIDAASKHIAESTENVREEEGNIKRSKESLCSMQQRVSRLDEQVR 118
                 56677889999999999999999999999988865411133344444444444442677999*******************************************999999876 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.9   7.8e-05      0.11     679     789 ..       8     117 ..       2     120 .] 0.55

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 7.8e-05
   TIGR02169 679 rlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklke.rleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleael 789
                  l+e+l +Le+  + + ++ r+  +  d+   ++s  + +  ++  ++  ++++  +lk+ +le+le+++++ +++++e  e++ e e +i++ +e+l  +++ +  l+++ 
  MMETSP1174-20130828|6303_1   8 DLNEKLSQLEELMALALADNRKSANGTDKEPVRISTNQDEEVALPTDM--IRRQIFELKRiELENLENEIDAASKHIAESTENVREEEGNIKRSKESLCSMQQRVSRLDEQV 117
                 466666666666666666666666666655555555444444443333..55555444332566666666666666666666666666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|6302_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 634.56
//
Query:       MMETSP1174-20130828|6310_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|6308_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|6309_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   28.7   0.0    2.6e-07   28.1   0.0    1.3  1  TIGR00436 era: GTP-binding protein Era
    5.1e-07   26.7   0.0    7.7e-07   26.1   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.1e-05   22.5   2.6     0.0015   15.5   0.1    2.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    5.5e-05   20.1   0.1    0.00011   19.2   0.0    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.5e-05   19.8   0.0    0.00011   18.8   0.0    1.4  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    9.6e-05   20.0   0.7    0.00066   17.2   0.5    2.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0001   20.0   0.1    0.00019   19.1   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00032   18.0   0.0    0.00077   16.8   0.0    1.6  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
     0.0035   14.8   0.0     0.0069   13.8   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
     0.0046   13.4   0.0     0.0068   12.8   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
     0.0074   13.6   0.0      0.014   12.6   0.0    1.4  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
     0.0082   13.5   0.0      0.019   12.3   0.0    1.6  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0084   13.1   0.3      0.015   12.2   0.2    1.4  1  TIGR00750 lao: LAO/AO transport system ATPase
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.022   12.1   0.0    1.4  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      0.021   11.7   0.5       0.55    7.0   0.0    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   9.7e-10   2.6e-07       2     135 ..      14     151 ..      13     187 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 9.7e-10
   TIGR00436   2 fvailGrpnvGKSTLlNkllg.....qkisivSpkaqT...TrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedellleklqklkapvvlalnkldnkekdkllelidkeasl 135
                 ++ai G++ +GKSTL+N+l g     +  s vS+++ T      r +g + + +  +++ D PG  +k    ++ ++   +  l++ d  ++v + ++  ++d  l e l+++++ v++++nk++    ++ + + ++++ +
  MMETSP1174-20130828|6309_1  14 RIAITGQSGAGKSTLVNTLRGippwhDAASPVSSIQTTgvtSEFRKEGYVSTFTDDVVYYDLPGCGTKAIPRETYVN---SFELEQYDAFILVTQ-QRVDENDIWLRETLRNMSKTVFIVRNKVNIDVAQEFEDHRKTQSET 151
                 79*****************87555536677888887652213567899****************9988655555544...457999999887654.55555579*******************9766555555544444433 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.8e-09   7.7e-07       3     149 ..       8     158 ..       6     189 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.8e-09
   TIGR03918   3 pkaerlhialfGrrNaGKSsliNaltg.....qdvaivsdvpGtT.tDpvekamEllpl.GpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke.keklekkkeeevvlvs 149
                  ++ +++ia+ G+  aGKS+l+N+l g     + ++ vs+++ t  t   +k+  +  +   vv +D +G   ++   e+ v      le+ d ++lv++++  + e +  l e+l++++  v +v nk+++  +++  +++++++++   + ++
  MMETSP1174-20130828|6309_1   8 REGVKVRIAITGQSGAGKSTLVNTLRGippwhDAASPVSSIQTTGvTSEFRKEGYVSTFtDDVVYYDLPGCGTKAIPRETYV-N-SFELEQYDAFILVTQQR--VDENDIWLRETLRNMSKTVFIVRNKVNIDVAQEFeDHRKTQSETLGSIRTE 158
                 578899*******************864444367888999876632555666666666515799999999976654444333.3.3469***********99..799999*******************99987765434444444444445444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.3e-06    0.0015     173     197 ..      10      34 ..       2      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.3e-06
   TIGR03594 173 eepikiaiiGrpNvGKStLvNallg 197
                   +++iai G+  +GKStLvN+l g
  MMETSP1174-20130828|6309_1  10 GVKVRIAITGQSGAGKSTLVNTLRG 34 
                 4469*****************9965 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.9e-07   0.00011     350     390 ..      14      54 ..       4      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.9e-07
   TIGR02857 350 lvalvGaSGaGKstllklllgfvepteGailvngaelaeld 390
                 ++a++G+SGaGKstl++ l g+ + ++ a  v + + + ++
  MMETSP1174-20130828|6309_1  14 RIAITGQSGAGKSTLVNTLRGIPPWHDAASPVSSIQTTGVT 54 
                 79*******************98877777777776666655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     4e-07   0.00011     363     400 ..      14      51 ..       3      70 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4e-07
   TIGR02868 363 rvavvGasGaGKstLlallaglldplkGevtldgvsva 400
                 r+a++G+sGaGKstL+++l g+ + ++    +++++ +
  MMETSP1174-20130828|6309_1  14 RIAITGQSGAGKSTLVNTLRGIPPWHDAASPVSSIQTT 51 
                 89*******************98877776666666555 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   2.4e-06   0.00066      18     139 ..      12     133 ..       2     165 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.4e-06
   TIGR03598  18 lpeiafaGrSNvGKSsliNaLtn....rkklartS..ktPGrTqlin....ffevneelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKa 139
                 ++ ia++G+S +GKS+l+N+L +    + + + +S  +t G T +      + +++++++  DlPG G  ++++e+  +    +e+Y        + +l+   r  + e+D  l e+l++ + +v++v +K+
  MMETSP1174-20130828|6309_1  12 KVRIAITGQSGAGKSTLVNTLRGippwHDAASPVSsiQTTGVTSEFRkegyVSTFTDDVVYYDLPGCGTKAIPRETYVNSF-ELEQY-------DAFILVTQQR--VDENDIWLRETLRNMSKTVFIVRNKV 133
                 6789*****************863333344444553368888887642221223467889999999998887776433222.12222.......3334443333..35666666666666666666666665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.9e-07   0.00019       4     138 ..      13     151 ..      11     162 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 6.9e-07
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp.......gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfak 138
                 ++i+i G++++GKstL n l++     +++ p       gvt ++++e   +   t  v + D++G   ++  r+ yv+  e  le +d  ilv  +++ + + +  +++ ++++++ + +v nK+++    +++ + k+  + 
  MMETSP1174-20130828|6309_1  13 VRIAITGQSGAGKSTLVNTLRGIPPWHDAASPvssiqttGVTSEFRKE-GYVSTFTDDVVYYDLPGCGTKAIPRETYVNSFE--LEQYDAFILV--TQQRVDENDIWLRETLRNMSKTVFIVRNKVNIDVaqEFEDHRKTQSET 151
                 689******************988766666667755566666666665.334444568999*****7666344555555444..8999999993..455555888888899998999999999**9988765666666655554 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.8e-06   0.00077      27      46 ..      15      34 ..       7      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.8e-06
   TIGR03608 27 vaivGesGsGKstlLnilgl 46
                +ai+G+sG+GKstl+n l  
  MMETSP1174-20130828|6309_1 15 IAITGQSGAGKSTLVNTLRG 34
                8***************9865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.5e-05    0.0069      26      47 ..      14      35 ..       5      58 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-05
   TIGR01277 26 rvailGesGaGkstllnliaGf 47
                r+ai G+sGaGkstl+n + G 
  MMETSP1174-20130828|6309_1 14 RIAITGQSGAGKSTLVNTLRGI 35
                68***************98885 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05    0.0068      54      72 ..      15      33 ..      12      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
   TIGR00955 54 lAvlGsSGaGKtTLlnala 72
                +A+ G SGaGK+TL+n+l 
  MMETSP1174-20130828|6309_1 15 IAITGQSGAGKSTLVNTLR 33
                79**************996 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.1e-05     0.014      31      51 ..      15      35 ..       6      60 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-05
   TIGR02315 31 vaviGlsGaGkstllrsinrl 51
                +a+ G+sGaGkstl+ ++ ++
  MMETSP1174-20130828|6309_1 15 IAITGQSGAGKSTLVNTLRGI 35
                799***********9999876 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     7e-05     0.019     127     144 ..      17      34 ..       6      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-05
   TIGR00157 127 faGqSGVGKSSLiNlldp 144
                 ++GqSG GKS L+N+l +
  MMETSP1174-20130828|6309_1  17 ITGQSGAGKSTLVNTLRG 34 
                 68************9964 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   5.6e-05     0.015      25      54 ..       3      32 ..       1      35 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.6e-05
   TIGR00750 25 krilpktGrahvvGltGvPGaGkstlvekl 54
                ++++ + G   ++ +tG  GaGkstlv+ l
  MMETSP1174-20130828|6309_1  3 NAVTKREGVKVRIAITGQSGAGKSTLVNTL 32
                56777889999****************987 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05     0.022      34      54 ..      15      35 ..       6      45 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-05
   TIGR02211 34 vaivGssGsGkstllhllggl 54
                +ai+G+sG+Gkstl+ +l g+
  MMETSP1174-20130828|6309_1 15 IAITGQSGAGKSTLVNTLRGI 35
                79**************99886 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.002      0.55     209     229 ..      12      32 ..       2      63 .. 0.85
   2 ?    2.9   0.2     0.037        10     300     352 ..     106     159 ..      90     208 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
   TIGR00450 209 glklaivGktNvGKSSLlNal 229
                  +++ai G+  +GKS L+N l
  MMETSP1174-20130828|6309_1  12 KVRIAITGQSGAGKSTLVNTL 32 
                 36789**************87 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.037
   TIGR00450 300 kpltkdd.eliitlkkkkkdlllvlNKiDLaeleilkselkltvsllsakqlki 352
                 +  +++d  l +tl++  k +++v NK ++   ++++ + k ++ +l  + ++ 
  MMETSP1174-20130828|6309_1 106 QRVDENDiWLRETLRNMSKTVFIVRNKVNIDVAQEFEDHRKTQSETLGSIRTEL 159
                 33334442666788899999*******999944444444555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      249  (0.0607021); expected 82.0 (0.02)
Passed Vit filter:                        92  (0.0224281); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.48
# Mc/sec: 1044.91
//
Query:       MMETSP1174-20130828|6307_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1753.57
//
Query:       MMETSP1174-20130828|6314_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 962.74
//
Query:       MMETSP1174-20130828|6315_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|6316_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|6317_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|6318_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 354.72
//
Query:       MMETSP1174-20130828|6322_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.5   0.0      0.024   11.4   0.0    1.0  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     6e-06     0.024     223     249 ..      13      39 ..       3      48 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6e-06
   TIGR00169 223 amqLvksPeqldvvvtsnlfGDilsDe 249
                    L+k+P+ l+vv+   +f  i++D 
  MMETSP1174-20130828|6322_1  13 VTLLLKHPSILNVVIGAEIFDAIIADM 39 
                 55799********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|6319_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   18.3   0.0       0.16    8.8   0.0    3.0  3  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
  ------ inclusion threshold ------
        0.1   10.5   2.4        2.2    6.2   0.0    3.1  3  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.067   1.4e+02      72     129 ..       4      62 ..       1      64 [. 0.82
   2 !    5.2   0.0   0.00098         2      83     113 ..     261     291 ..     254     304 .. 0.60
   3 !    8.8   0.0   7.8e-05      0.16      88     142 ..     345     405 ..     318     423 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.067
   TIGR03866  72 teevlkelpsGed.PelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePeG 129
                 t++   +l sGe  P + ++  ++  + +  + d+l  v   + +++la+i+ G    G
  MMETSP1174-20130828|6319_1   4 TSQRSMSLTSGERlPRTTIIRDEEYQIQTDINTDTLFFVCSYTDNEILAHIPKGASGKG 62 
                 66677789999855899999999999999999999999999999999999999987666 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00098
   TIGR03866  83 edPelfvlepdgkllyianeddalvtvvdie 113
                 + P   v++p  k++yi ne +++v+++  +
  MMETSP1174-20130828|6319_1 261 QGPRHAVFHPRVKVMYIVNELNSTVSLLQYN 291
                 4455555666666666666666665555443 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 7.8e-05
   TIGR03866  88 fvlepdgkllyianeddalvtvvdiekrk..vlaeidv....GvePeGlavsPdgklvvnt 142
                 + l+p+g+ll++an     ++v di++++  vl  + +    Gv P  +     gk+vv+ 
  MMETSP1174-20130828|6319_1 345 MRLHPKGHLLFVANRGHDSIAVFDIDESQggVLRLLTItpsgGVFPRNFNFDSTGKYVVVG 405
                 5677777777777777777777777765433332222111224555555555555555544 PP

>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       0.1   2.1e+02       7      18 ..     276     287 ..     273     289 .. 0.89
   2 ?    6.2   0.0    0.0011       2.2       1      20 [.     349     368 ..     349     371 .. 0.92
   3 ?    0.9   0.8     0.049     1e+02       3      16 ..     399     412 ..     398     414 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.1
   TIGR02276   7 YVtNsgSnsVsV 18 
                 Y++N+ + +Vs 
  MMETSP1174-20130828|6319_1 276 YIVNELNSTVSL 287
                 9*********96 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0011
   TIGR02276   1 PdGtkvYVtNsgSnsVsVID 20 
                 P G  ++V+N+g +s+ V D
  MMETSP1174-20130828|6319_1 349 PKGHLLFVANRGHDSIAVFD 368
                 8999************9977 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.049
   TIGR02276   3 GtkvYVtNsgSnsV 16 
                 G++v V N+ Sn +
  MMETSP1174-20130828|6319_1 399 GKYVVVGNQNSNNL 412
                 99**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 1193.18
//
Query:       MMETSP1174-20130828|6324_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-76  253.0   0.2    8.8e-76  252.8   0.1    1.0  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
    9.3e-05   19.7   0.0    0.00013   19.3   0.0    1.3  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
     0.0014   15.7   0.0      0.002   15.1   0.0    1.2  1  TIGR02371 ala_DH_arch: alanine dehydrogenase
     0.0017   15.5   0.0     0.0022   15.2   0.0    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
     0.0032   14.3   0.0     0.0089   12.8   0.0    1.7  2  TIGR01035 hemA: glutamyl-tRNA reductase
     0.0095   12.9   0.0      0.014   12.4   0.0    1.3  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.027   11.3   0.0    1.2  1  TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
      0.036   11.1   0.0      0.072   10.1   0.0    1.5  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.1   1.7e-78   8.8e-76       2     263 .]      32     290 ..      31     290 .. 0.98

  Alignments for each domain:
  == domain 1    score: 252.8 bits;  conditional E-value: 1.7e-78
   TIGR00112   2 aiiGaGnmgeallsgllkkgakakkeilvierseeklaalakelgvevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlleaekrvvRvmPNtaakvgagvtaiaassevseeqkelveellkavGkvveve.eklldavtalsGSgPAfvflliealadagvklGLpreeakelaaqtlkGaaklleesgehpalLkdkVtsPgGtTiaglavLeekgvrsavieaveaavkrseeL 263
                 +iiG+G+m+ea++ gl kk+   +  + v++ +++  +++ak++g++ +++ +eav+  d+vllavKPq+le+v +el + + ++e+++iSilAG t++ + ++l++  rvvR mPNt+a+v++g+t+ + +sev+ eqk+    ll+++G+ ++ve ek ld +talsGSgPA+vfll+ea++++gv+ G++re a++la++t+kG+a   + s++hpa+L+ ++tsPgGtT+ ++ +Le++++r++v++++ +a++rs eL
  MMETSP1174-20130828|6324_1  32 GIIGCGKMAEAMAVGLTKKNL--DWGLQVYDVHDQSCQRFAKRFGATPCESPVEAVAGCDFVLLAVKPQNLEDVGRELSG-HISNETTVISILAGKTLDSVAKALNC-IRVVRSMPNTPAAVQQGITVWTCNSEVTLEQKSSCAVLLQSLGEEIQVEeEKFLDMATALSGSGPAYVFLLMEAMIETGVHFGFSREIATKLAYSTVKGSAIYAQSSDKHPAELRSDITSPGGTTASAVYALEKGAFRTTVADGLWSAYRRSLEL 290
                 69***************9854..6899****************************************************9.8889********************97.89***********************************************88899*************************************************************************************************9887 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.5e-07   0.00013       2      57 ..      34      92 ..      33     154 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.5e-07
   TIGR01692  2 iGlGnmGgpmaanllkag..havrvfdlsakaveel.veaGaqaaasaaeaveeadvvi 57
                iG G m ++ma  l k++  + ++v+d++ + ++++ +  Ga+  +s+ eav++ d v+
  MMETSP1174-20130828|6324_1 34 IGCGKMAEAMAVGLTKKNldWGLQVYDVHDQSCQRFaKRFGATPCESPVEAVAGCDFVL 92
                9***************8633789***********972567****************986 PP

>> TIGR02371  ala_DH_arch: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.9e-06     0.002     129     201 ..      29      97 ..      23     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.9e-06
   TIGR02371 129 svlGliGaGrqaytqlealsrvfdleevkvysrtkeaaekfvkeasdyevpvsaaeepaekvsdcdil.vtttp 201
                 ++ G+iG+G+ a      l++      ++vy++ ++++++f+k+           e p+e+v++cd + +++ p
  MMETSP1174-20130828|6324_1  29 KRAGIIGCGKMAEAMAVGLTKKNLDWGLQVYDVHDQSCQRFAKRFGATP-----CESPVEAVAGCDFVlLAVKP 97 
                 789**********999999887766789***************986554.....6789********65145555 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06    0.0022      57     129 ..      75     158 ..      33     229 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.2e-06
   TIGR00745  57 veaaedpetls.kaDlllvtvKayqteealakllpyigkntvvlllqNGlgneeklrellpe...........rkvllGvvthga 129
                  + +e+p ++   +D +l++vK   +e++  +l  +i+++t+v+++  G   ++ ++++l              +v +G++ +++
  MMETSP1174-20130828|6324_1  75 ATPCESPVEAVaGCDFVLLAVKPQNLEDVGRELSGHISNETTVISILAGKT-LDSVAKALNCirvvrsmpntpAAVQQGITVWTC 158
                 233333333336**********************************99843.444444443322333334444444444444444 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.7e-05    0.0089     173     227 ..      21      76 ..      19     140 .. 0.82
   2 ?   -1.3   0.0      0.34   1.7e+02      38      83 ..     148     189 ..     128     198 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.7e-05
   TIGR01035 173 kilgsLkgkkvlliGaGemaeLvakhLkekgvk.kvlilnRtyekaekLakeleee 227
                 + + +L gk++ +iG G+mae +a  L++k++   +++ +   +  +++ak+++++
  MMETSP1174-20130828|6324_1  21 SNFSQLPGKRAGIIGCGKMAEAMAVGLTKKNLDwGLQVYDVHDQSCQRFAKRFGAT 76 
                 57899**************************974699***************9875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.34
   TIGR01035  38 sieeaivlsTCNRvEiyavvenleelksallkilaetkklseedle 83 
                  +++ i + TCN  E+ +    +++    ll+ l e  +++ee++ 
  MMETSP1174-20130828|6324_1 148 AVQQGITVWTCNS-EVTLE---QKSSCAVLLQSLGEEIQVEEEKFL 189
                 7899999999994.66553...344444577777777777777665 PP

>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.8e-05     0.014      77     122 ..      82     127 ..      76     191 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
   TIGR03376  77 eeaakdadilvfviPhqflekilkqlkgkvkkkaraisclkGlevs 122
                 +ea+++ d ++  +  q le + ++l+g++++++++is+l G    
  MMETSP1174-20130828|6324_1  82 VEAVAGCDFVLLAVKPQNLEDVGRELSGHISNETTVISILAGKTLD 127
                 6899***********************************9885433 PP

>> TIGR03944  dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.2e-05     0.027     133     203 ..      29      92 ..      22      99 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-05
   TIGR03944 133 krvgiiGcGlIarevlrfllelgpeleevslyDldearaeafaaelkeevekkvevaesaeealreadlvv 203
                 kr+giiGcG +a+ +   l+++  +   +++yD++++++++fa+++ ++        es  ea++ +d v+
  MMETSP1174-20130828|6324_1  29 KRAGIIGCGKMAEAMAVGLTKKNLDW-GLQVYDVHDQSCQRFAKRFGAT------PCESPVEAVAGCDFVL 92 
                 789**********9999998865554.5789999999999999998653......3344444555555555 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014     0.072       3      90 ..      31     118 ..      29     138 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
   TIGR00872   3 lgliGlGrmGaniakrlakrg..hevvgydrdqdaveelkedraegvanlkellkrlsaprvvwvmvpagivdavleelapllekGdivi 90 
                  g+iG G+m  ++a  l+k++  + + +yd+++++ ++ ++  +   +  +  ++ +     v + v     ++v +el+  +++  +vi
  MMETSP1174-20130828|6324_1  31 AGIIGCGKMAEAMAVGLTKKNldWGLQVYDVHDQSCQRFAKRFGA--TPCESPVEAVAGCDFVLLAVKPQNLEDVGRELSGHISNETTVI 118
                 589*********999998886337799***999988888755432..3333344445555556666655556666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1059.39
//
Query:       MMETSP1174-20130828|6326_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-10   36.6   0.0    8.2e-09   33.2   0.0    2.0  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     2e-12   8.2e-09       2      94 ..       9     105 ..       8     119 .. 0.91
   2 ?    1.1   0.0     0.013        53     138     172 ..     148     181 ..     130     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2e-12
   TIGR01262   2 lYsyfrSsasyRvRiaLaLkgidyesvpvnLlkd.GeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepa...Llpkdpakrarvr 94 
                 lY+   S   +R+R+ L  k++  e v +    d G  k+eef + NPq+++PtL+  +g+ + +S  i  +L  ty + +   L p+dp k a   
  MMETSP1174-20130828|6326_1   9 LYDLPVSNNGARCRMVLYYKEVPEEEVNIVSPMDiGGLKSEEFLKYNPQGKMPTLVLADGTNVPESDTIARFLGATYKDRPgpdLFPSDPLKSALSD 105
                 7888889999*************999998888889*****************************************99887778******9987665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.013
   TIGR01262 138 GlaalEellkekagafcvGdevtladvcLvpqvyn 172
                  l+ lE+ +++ +g + + +++t ad+ + p +  
  MMETSP1174-20130828|6326_1 148 ELEVLETYVDP-TGPYLTAAHPTHADCAVFPTLLF 181
                 46777777776.899**************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1267.79
//
Query:       MMETSP1174-20130828|6327_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-69  230.6   1.1    7.9e-69  230.4   0.8    1.0  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
    6.2e-49  164.7   0.3    7.1e-49  164.5   0.2    1.0  1  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.8   3.9e-72   7.9e-69     531     709 ..       1     186 [.       1     187 [] 0.93

  Alignments for each domain:
  == domain 1    score: 230.4 bits;  conditional E-value: 3.9e-72
   TIGR01092 531 dypaacnaletllvhkdllrngllddlivvlrvegvklyaGprlaallkln.isevkslrreysskaltveivddvydaidhihkyGsahtdvivtedeevaeiflqkvdsaavlhnastrfsdGfrfGlGaevGistsriharGpvGveGllttrwllrGk.dqvvs.....gdkGlvylhkdlp 709
                 +ypaacna et+l+h+   ++g    +++ lr  gv l +Gp+  a+  ++   +++s+  ey+++ + ve+v  + +ai hih++Gs+ht++ivted  +ae f++  d+a+v+hnastrf+dGfrfGlGaevGist riharGpvGveGlltt+w+l+   ++ v      gd+  vy+h++l 
  MMETSP1174-20130828|6327_1   1 NYPAACNATETVLIHQAKVDSGGCAAVMMALRKAGVSLKGGPNAVAHGLIDgCCAAESMSVEYGDLTCLVEVVAGMEEAIAHIHEHGSSHTECIVTEDTATAEEFIKTTDAACVFHNASTRFADGFRFGLGAEVGISTGRIHARGPVGVEGLLTTKWVLKSTiGDTVAgfsgtGDDTRVYTHRNLD 186
                 6******************************************8887776526799********************************************************************************************************854555554666678889*****995 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.2   3.4e-52   7.1e-49     240     398 .]       1     156 [.       1     156 [. 0.89

  Alignments for each domain:
  == domain 1    score: 164.5 bits;  conditional E-value: 3.4e-52
   TIGR00407 240 qrPstCnaietLLvnkaiaeef.leeLekqleekgvelra..dalvlkllelekateaevskedfdkeflsldLsvkivedleeaiehirqygtkhsdailtedkknaekfvkevdsaavyvnastrfadGfrfGfGaevgistqklharGPvGLeaLvsyk 398
                 ++P++Cna et+L+++a  ++    +++ +l ++gv+l++  +a+++ l++   a       e +  e+++l   v +v  +eeai+hi+++g+ h+++i+ted+++ae+f+k+ d+a v++nastrfadGfrfG+Gaevgist ++harGPvG+e+L ++k
  MMETSP1174-20130828|6327_1   1 NYPAACNATETVLIHQAKVDSGgCAAVMMALRKAGVSLKGgpNAVAHGLIDGCCAA------ESMSVEYGDLTCLVEVVAGMEEAIAHIHEHGSSHTECIVTEDTATAEEFIKTTDAACVFHNASTRFADGFRFGLGAEVGISTGRIHARGPVGVEGLLTTK 156
                 79*************988776516789999**********5555555555544332......44678*******************************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 705.20
//
Query:       MMETSP1174-20130828|6331_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.8   0.2      0.019   12.4   0.1    1.2  1  TIGR03138 QueF: queuine synthase
      0.035   12.2   6.4      0.041   12.0   3.7    1.6  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
       0.36    7.8   5.0          1    6.3   3.5    1.7  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03138  QueF: queuine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.4e-05     0.019     136     166 ..      61      91 ..      20     103 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   TIGR03138 136 aelegeciDdldieideyepdasllktesse 166
                  ++++ ciDdld+++ +y+ +a+ l++++  
  MMETSP1174-20130828|6331_1  61 LHTKDACIDDLDLKVRHYHEEAQKLEQQQLA 91 
                 356899********************99754 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.7     3e-05     0.041      24     115 ..      43     136 ..      29     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-05
   TIGR03495  24 araslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqql..aqaeallaqrekrierLlreneelRrWadtpLPddviRLrqrPAl 115
                   ++ +k + ++++   +l+ k++ ++ l  ++++ +e+ ++L+qq+    +e l  + ++++e+L +en++lRr   t    + +RLr+  A+
  MMETSP1174-20130828|6331_1  43 DCQKCQKLKLEVDELVVDLHTKDACIDDLDLKVRHYHEEAQKLEQQQlaGPVEGLQMSLKEEVEQLREENAKLRRRVKTLHRTAEMRLRTYEAM 136
                 445566666777888889999999999999999999999999987751135788889999***************9999888888888877666 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.5   0.00076         1      92     168 ..      78     154 ..      13     214 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00076
   TIGR03752  92 lkkreesvd.eriqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqse 168
                  +++ ++++ ++++  +e+ + +lk+e eql+ee akl++++++l++  e    ++e+ ++d   g+G++++ k++ +
  MMETSP1174-20130828|6331_1  78 YHEEAQKLEqQQLAGPVEGLQMSLKEEVEQLREENAKLRRRVKTLHRTAEMRLRTYEAMQSDGG-GVGVRPEMKNEPA 154
                 4444445441567788888888999999999999999999988888777777777777777765.8888887777663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 653.95
//
Query:       MMETSP1174-20130828|6334_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 367.09
//
Query:       MMETSP1174-20130828|6335_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|6338_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-17   59.2   0.0    3.3e-06   24.8   0.0    4.3  4  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.016   11.3   0.0       0.75    5.7   0.0    2.0  2  TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0018       3.7       1      22 [.      18      39 ..      18      43 .. 0.89
   2 !   17.8   0.0   2.6e-07   0.00054      11      34 ..      64      87 ..      54      88 .. 0.87
   3 !   24.8   0.0   1.6e-09   3.3e-06       2      34 ..      90     122 ..      89     123 .. 0.96
   4 !    5.9   0.0    0.0016       3.4      14      26 ..     134     146 ..     124     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0018
   TIGR00756  1 vtyntlisglckagrveeAlel 22
                v++n+l++g  + g++e A  l
  MMETSP1174-20130828|6338_1 18 VSFNALLNGTLHVGCLEGASML 39
                79***************99876 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 2.6e-07
   TIGR00756 11 ckagrveeAlelfdeMkergivPd 34
                ++ g++e+Al+l ++M+e+ i+P+
  MMETSP1174-20130828|6338_1 64 ANGGEFEKALRLVELMLEHRIKPT 87
                688********************8 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 1.6e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++n+ i ++++ g+ve+A++l ++M+++ ++Pd
  MMETSP1174-20130828|6338_1  90 SFNAAIVACVNGGDVEKARRLVELMLDQQLKPD 122
                 89******************************9 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0016
   TIGR00756  14 grveeAlelfdeM 26 
                 g++e+A++l ++M
  MMETSP1174-20130828|6338_1 134 GQPEKAEDLIKKM 146
                 99**********9 PP

>> TIGR04170  RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0011       2.2     115     151 ..      53      92 ..      38      95 .. 0.73
   2 ?    5.7   0.0   0.00037      0.75     123     152 ..      99     128 ..      90     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0011
   TIGR04170 115 rvalvaltlad...GdeekakdlvdeiieqryqPatPtfl 151
                  +++ a ++a+   G+ eka  lv+ ++e r +P++ +f 
  MMETSP1174-20130828|6338_1  53 VIIISAAIVASangGEFEKALRLVELMLEHRIKPTAASFN 92 
                 555666555432236779*****************99995 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00037
   TIGR04170 123 ladGdeekakdlvdeiieqryqPatPtfln 152
                 +  Gd+eka+ lv+ +++q+ +P   tf  
  MMETSP1174-20130828|6338_1  99 VNGGDVEKARRLVELMLDQQLKPDLITFNA 128
                 4679*******************9999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1174-20130828|6340_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 870.30
//
Query:       MMETSP1174-20130828|6341_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1390.29
//
Query:       MMETSP1174-20130828|6347_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 951.55
//
Query:       MMETSP1174-20130828|6344_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-51  172.3   0.8    1.1e-49  167.2   0.2    2.2  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    8.6e-34  114.8   1.1    3.1e-31  106.3   0.4    2.1  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   0.2   5.2e-53   1.1e-49       2     373 ..       9     404 ..       8     413 .. 0.85
   2 !    3.1   0.0    0.0025       5.1     455     496 ..     509     550 ..     499     551 .] 0.89

  Alignments for each domain:
  == domain 1    score: 167.2 bits;  conditional E-value: 5.2e-53
   TIGR02350   2 iiGidLGttnsvvavlegge.....pvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle...eveeeakkvpykv.veaen.evkvevedke.....ytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldk........ekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelv.....kelvgkep....nksvnPdevvaiGaaiqggvl 373
                 ++Gi LG +  ++a+   g+     ++v+a+  G+rttP+vv+ + +ge lvGe+a++qa  n   +++    liGr+     e+++ a+++p+   v+ +  +v++ev+d+e      tp e+   +L++lk  ae++ G +v   v+tvPa + + qr      G+  Gl+v +++ eP a  La+Gld+        ++ ++++lv dlG  ++ +++l+ + g+++ +++   +++ G  f ++++d+ +++fk+++gi +s+  +a+ +l +a ++a   Ls + +t++++  +       ++l+l+++ra+fe+l +dl++ + ++++++l+++k    ei +v+l GG++r+ +vq l       ++v   p    ++++ Pde+ ++Gaa q++ l
  MMETSP1174-20130828|6344_1   9 AVGIRLGISSVTLAICRMGQgfdsrATVVASVGGERTTPAVVGKAANGEWLVGEAARHQAHKNRSGVFIDFFALIGREDFeveETKALAASLPFGTrVNGDTgAVEIEVRDDEkgqtwTTPTELLGLLLRQLKGLAEEQAGGRVGACVVTVPADMTEFQRGQISVLGSTIGLDVFQVLSEPSAVLLAHGLDQpprddqtsHRASQRVLVLDLGASALRLTLLQCERGIISQEAAVTLKTVSGRLFVQRLVDFASKQFKRKTGIVVSESPKAVLKLDKACDNALRVLSKSPQTDLEVESLCE----GMDLRLRVSRARFEDLSTDLFKMIDDALDEILQNTK---GEI-QVLLSGGAARLTKVQALAfsqkrPQVVQTPPadliKEALVPDEAASLGAAAQAARL 404
                 69************9986642333389*************************************************9865122555556778996525555568999998654333334799********************************************************************9733322221244689*****************************************************************************************998875....4789****************************9875...566.69************97542211122333333222267889************9854 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0025
   TIGR02350 455 paPrGvpqievtfdidanGilsvsakdkatgkeqsititass 496
                  +P G  +++v f +  +G ++v+a + a+g e ++++t ss
  MMETSP1174-20130828|6344_1 509 LTPEGDLKVQVDFAMGLDGCVDVHAVEAASGIEGDLSLTVSS 550
                 5799***************************99999888776 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.4   1.5e-34   3.1e-31       1     367 [.       9     409 ..       9     415 .. 0.80
   2 !    7.2   0.0   0.00016      0.32     449     483 ..     512     546 ..     492     551 .] 0.84

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 1.5e-34
   TIGR01991   1 avGiDlGttnslvaavr.....egkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsledv...kkeaeelpyel.edakgemvrlktaqg.....evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.........aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklilkkagle.aelskeekkellk...aaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqav.....aelFkkep...l.tdldPdevvAlGAalqadlLaknkr 367
                 avGi lG     +a  r     +++a+v+    g+ + p+vv  +++g+  vG++a+++a+++ + + i    l+Gr   +v   k+ a++lp+   ++++ + v++++++        tP e+   +L++lk  aee+ g+ + ++v+tvPA   ++qr ++   +   gl+v+ +l eP a  +A Gld+         ++ + ++v DLG     + +L+ e+G+    a+     + G  f ++l+++  k+ + +   + +e+ k++lk   a  +a + L+++ ++++ev+   eg+dl+ ++sr+++e+l ++l k   ++  ++l++++    ei +v+l GG+ r+ +v++        ++ ++ p   +   l Pde   lGAa qa  L++ + 
  MMETSP1174-20130828|6344_1   9 AVGIRLGISSVTLAICRmgqgfDSRATVVASVGGERTTPAVVGKAANGEWLVGEAARHQAHKNRSGVFIDFFALIGREDFEVeetKALAASLPFGTrVNGDTGAVEIEVRDDekgqtWTTPTELLGLLLRQLKGLAEEQAGGRVGACVVTVPADMTEFQRGQISVLGSTIGLDVFQVLSEPSAVLLAHGLDQpprddqtshRASQRVLVLDLGASALRLTLLQCERGIISQEAAVTLKTVSGRLFVQRLVDFASKQFKRKtGIVVSESPKAVLKldkACDNALRVLSKSPQTDLEVESlcEGMDLRLRVSRARFEDLSTDLFKMIDDALDEILQNTK---GEI-QVLLSGGAARLTKVQALAfsqkrPQVVQTPPadlIkEALVPDEAASLGAAAQAARLVRGED 409
                 68999998888888776222224578999999*********************************************9766611155567899977456667789998876522233579************************************************************************999998877778899********************************************99988877743334444455554110444566778999999988875579********************9876666666666654...455.69**********9986431111133444433221213578***************998765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00016
   TIGR01991 449 AGaarirvtfqvDadGllsvsaqekltgveakiev 483
                  G  +++v f +  dG + v+a e+ +g+e ++++
  MMETSP1174-20130828|6344_1 512 EGDLKVQVDFAMGLDGCVDVHAVEAASGIEGDLSL 546
                 5899*************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1913.84
//
Query:       MMETSP1174-20130828|6360_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|6358_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1316.32
//
Query:       MMETSP1174-20130828|6366_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|6367_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.5   2.7       0.16   10.0   1.9    1.3  1  TIGR02973 nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein


Domain annotation for each model (and alignments):
>> TIGR02973  nitrate_rd_NapE: periplasmic nitrate reductase, NapE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.9     4e-05      0.16       5      29 ..       4      28 ..       1      29 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4e-05
   TIGR02973  5 litFlfLaavlaPvlsviiVggyGf 29
                ++  l+L++++  +l+v + g +G 
  MMETSP1174-20130828|6367_1  4 AFIVLLLVMCIYAILAVEFFGEFGV 28
                4455788999**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|6369_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 718.99
//
Query:       MMETSP1174-20130828|6372_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|6368_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1293.49
//
Query:       MMETSP1174-20130828|6373_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 769.94
//
Query:       MMETSP1174-20130828|6374_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|6375_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.3   2.2     0.0023   14.8   1.5    1.2  1  TIGR03742 PRTRC_F: PRTRC system protein F


Domain annotation for each model (and alignments):
>> TIGR03742  PRTRC_F: PRTRC system protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.5   5.6e-07    0.0023     169     231 ..      50     113 ..      47     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.6e-07
   TIGR03742 169 eealeelcdeddeereaylpsvveqaleedaflps.hehlkewaarkklkaagrvalvaakaks 231
                 ee+  e++++d+e++e+ + ++ e+++  d ++p  +e++ +w++ +++ka +r++++aa a+ 
  MMETSP1174-20130828|6375_1  50 EEWTPERFNQDKEDEERLRVAAMEKEILADGYDPAnEESVNAWRRLQAEKAKERMQQRAAAAQA 113
                 899999****************************98899***************6666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1302.86
//
Query:       MMETSP1174-20130828|6378_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|6376_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.2   0.0    1.1e-11   42.2   0.0    3.2  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.9e-09   33.0   0.0      1e-08   32.6   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    3.8e-07   27.1   0.0    7.2e-07   26.2   0.0    1.4  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.1e-06   24.4   0.0    2.1e-06   24.4   0.0    3.0  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.7e-05   21.6   0.0    2.3e-05   21.1   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00015   19.3   0.0     0.0002   18.9   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.7e-14   1.1e-11     216     296 ..     118     199 ..      94     236 .. 0.87
   2 ?   -7.8  11.3         6   4.1e+03      29      67 ..     249     289 ..     239     312 .. 0.49
   3 ?   -1.8  18.9      0.36   2.5e+02      24      64 ..     314     354 .]     291     354 .] 0.71

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.7e-14
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpet.GrskGyGFiqFsdaeeakeAleklNGlelAGReikvgla 296
                 s a + L+v  l f+ tE +Lr  Fe FG+i++++l +D+ +  + +Gy Fi+++  +  +eA ++  G  + GR i v   
  MMETSP1174-20130828|6376_1 118 SDAYKTLFVARLSFDSTERKLRREFEQFGPIKMLRLVMDKTAeNKPRGYAFIEYERDGDMREAYKRSDGRKIDGRRIVVDVE 199
                 667889*********************************9763599*******************************99764 PP

  == domain 2    score: -7.8 bits;  conditional E-value: 6
   TIGR01622  29 rsRdr.srdRersr.skerdrdfdrrdrdrdkyrdrerrsr 67 
                 ++Rdr +++R ++    +rdr   +r  drd+y    r+sr
  MMETSP1174-20130828|6376_1 249 GDRDRyESSRSSGGgGGDRDRGRPERRDDRDRYGPSSRDSR 289
                 45555233444443434444433334445555544444433 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.36
   TIGR01622  24 dksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrer 64 
                  ++r+r+R r+  R+ +r+ +rdr    r rdr++ rdr+r
  MMETSP1174-20130828|6376_1 314 GNDRDRDRGRDGGRDGGRDENRDRGESSRTRDRSRSRDRRR 354
                 45677777777777777777777777777777777777765 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.5e-11     1e-08     156     264 ..      97     205 ..      73     230 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.5e-11
   TIGR01628 156 dkevyvgkfikksere..atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkde..knrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeR 264
                 + ++ ++++  ++  +    +++ +  l+v  l  + te klr+ F +fG i  +   +d+  +n+ rg+af++ye+  d ++A  + +g+ki+    g+ + V   + r+ R
  MMETSP1174-20130828|6376_1  97 KLQMAIENYDPHKPDRpeLVTSDAYKTLFVARLSFDSTERKLRREFEQFGPIKMLRLVMDKtaENKPRGYAFIEYERDGDMREAYKRSDGRKID----GRRIVVDVERGRTVR 205
                 345566677666655445566788999*************************9998888763267889*************************9....777777777777766 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     1e-09   7.2e-07      60     300 ..     123     195 ..      97     235 .. 0.57

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1e-09
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd..ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcisvdncrlfvGgiPktkkreeileelkkvteGvvdvivyasaadkkknrGfafveyeshraaamarrkllpGriklWGhviavdWaePevevdedvmakvkilyvrnlmletteeiieksfsefkpGavervkkirdyafvhfedredavkamdelnGkeleGseie 300
                  +fv ++  d  e  l   fe+ G+i  lrl+md   + k rGyaf+ +    + +ea k+ +                                                                                                                                                                          G++++G  i 
  MMETSP1174-20130828|6376_1 123 TLFVARLSFDSTERKLRREFEQFGPIKMLRLVMDktAENKPRGYAFIEYERDGDMREAYKRSD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRKIDGRRIV 195
                 345555555555555555555555555555555533333335555555555555555555555..........................................................................................................................................................................5555554444 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     3e-09   2.1e-06     291     369 ..     116     195 ..      79     200 .. 0.87
   2 ?   -8.3   7.6         6   4.1e+03      38      55 ..     265     282 ..     243     301 .. 0.44
   3 ?   -6.4  16.6         6   4.1e+03      22      61 ..     316     352 ..     293     354 .] 0.49

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3e-09
   TIGR01642 291 tvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdl.atGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLn 369
                 +++d  + l++  L +d ++ +++   e+FG++k   l+ d  a+ + +GyaF+ey+   +   A +  +G k+ ++++ 
  MMETSP1174-20130828|6376_1 116 VTSDAYKTLFVARLSFDSTERKLRREFEQFGPIKMLRLVMDKtAENKPRGYAFIEYERDGDMREAYKRSDGRKIDGRRIV 195
                 57899999*******************************9972456678********99999999998888888777665 PP

  == domain 2    score: -8.3 bits;  conditional E-value: 6
   TIGR01642  38 drrdrrrsrrkdsRdRdr 55 
                   rdr r  r+d+RdR  
  MMETSP1174-20130828|6376_1 265 GDRDRGRPERRDDRDRYG 282
                 122233444444444432 PP

  == domain 3    score: -6.4 bits;  conditional E-value: 6
   TIGR01642  22 eRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsr 61 
                 +R+R+R rd  rd  Rd +   r r + sR Rdr+r ++r
  MMETSP1174-20130828|6376_1 316 DRDRDRGRDGGRDGGRDEN---RDRGESSRTRDRSRSRDR 352
                 3333333333333333332...222222233332222222 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.4e-08   2.3e-05     110     179 ..     126     197 ..     115     213 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-08
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvt.qkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                 v  +sf+  e  lrr f+ fGPik + +  d  + +k +g+af+e e     + a  + +g  + Gr + v+
  MMETSP1174-20130828|6376_1 126 VARLSFDSTERKLRREFEQFGPIKMLRLVMDKTAeNKPRGYAFIEyERDGDMREAYKRSDGRKIDGRRIVVD 197
                 566778888888888888888888888888865415667888888666666677777777777777777665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-07    0.0002     269     340 ..     121     194 ..      82     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.9e-07
   TIGR01661 269 gycifvynlspdtdeavl.qlfgpfGavqsvkiirdltt.nkckGygfvsmtnydeaalailslnGytlgnrvl 340
                    +fv  ls d+ e  l + f +fG ++ ++++ d t+ nk +Gy+f+      +   a +  +G ++ +r +
  MMETSP1174-20130828|6376_1 121 YKTLFVARLSFDSTERKLrREFEQFGPIKMLRLVMDKTAeNKPRGYAFIEYERDGDMREAYKRSDGRKIDGRRI 194
                 45678888888877777756788888888888888865436778888887766666666666666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 1557.47
//
Query:       MMETSP1174-20130828|6384_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-06   23.5   0.0    2.3e-05   21.6   0.0    1.7  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.6e-09   2.3e-05      63     148 ..       5      98 ..       1     105 [. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.6e-09
   TIGR01934  63 akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdav....tiafGl........RNvtdiekaLkelaRVlkpggrlvilefskpk 148
                  +vtg+D+s++++++ +++ +++++    +++ da + pf+ ++f+a+    ti  Gl        RN+ + +++ +e+aRVlk+gg++v + + + +
  MMETSP1174-20130828|6384_1   5 YDVTGIDFSPHVIRLMRDQNPKRAS---CYQVMDASSTPFRPQTFHAAfdkgTID-GLlqfaatkpRNLRQARRVAREIARVLKKGGTFVSVSILNAD 98 
                 579***************9887754...799**********99987754443663.3334444666**********************9988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 610.92
//
Query:       MMETSP1174-20130828|6382_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 441.34
//
Query:       MMETSP1174-20130828|6379_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-62  208.7   0.0    2.9e-62  208.2   0.0    1.2  1  TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase
    5.5e-44  148.2   0.0    8.4e-44  147.6   0.0    1.2  1  TIGR00507 aroE: shikimate 5-dehydrogenase
    1.1e-29  101.9   0.0    1.8e-29  101.3   0.0    1.3  1  TIGR01093 aroD: 3-dehydroquinate dehydratase, type I
    6.1e-05   19.9   0.0    9.3e-05   19.3   0.0    1.2  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR01809  Shik-DH-AROM: shikimate-5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   0.0   2.8e-65   2.9e-62       4     282 .]     420     712 ..     418     712 .. 0.83

  Alignments for each domain:
  == domain 1    score: 208.2 bits;  conditional E-value: 2.8e-65
   TIGR01809   4 epkklfvvGkPiahsrsPnlhnagyeiLgLpdkfdkfetesaeelkevlsdfleefgGasvtiPlkldilrflDeltdrakliGsvntvlrtqnk......klkgdntDwdGiakalanigkfekva...ntaglviGaGGtsraavyaLasLGvkkifvinRskdklkkLvellvsefviirlesdkelee......ie....kdvevavstvPaDkplddevleaakrflvkkakaa.egilldaaYdpsvtplviiakaanwkvisGlqmLlhqgvaqfekftglkaPyeavadav 282
                  p k++++G+P++ s sP +hn ++e +gLp  +  + tes+++  e+ +    +fgGasvtiP k  il flDel+  a+ iG+vntv+            l gdntDw Gi++a+ +   +e +a   +  +lv+GaGGt+ aavya++sLG++ i v nR+++k+++L + + +   + r+    e+e+              ++v vstvPa    +       + f      +   +++ldaaY+p  t l+  a   + +vi G +mLl+qg++q e +t  +aP++ +  a+
  MMETSP1174-20130828|6379_1 420 SPSKFYLLGHPVQASPSPAMHNSAFERIGLPWNYRAYDTESVDDFVEKAL-SASDFGGASVTIPHKQTILPFLDELSPSAEAIGAVNTVIVKRASdnpgqrLLLGDNTDWLGIKRAVEARI-PESSAddwGGIALVVGAGGTAAAAVYAMQSLGLTVI-VYNRTPSKAQELAHRFDNPDGAARVAHVTEIEAgsiveaAAlsspVPIQVVVSTVPATAGFELPEWVLQQNFGD---SSYpPPVVLDAAYKPACTKLIEQATRGGCRVIMGAEMLLEQGMEQSEMWTHHRAPRHLMSRAI 712
                 6899***************************************9999888.699**********************************9965444458888899*************9976.898885444578*********************865.89************997655444444433333211000022212245899999999998887666555555544...333589***************************************************999987 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   8.2e-47   8.4e-44       5     265 ..     426     712 ..     423     717 .. 0.81

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 8.2e-47
   TIGR00507   5 viGnpikhSksplihnaalkqlgleleYlafeveieelekals.gikalglkGvnvTvPfKeevlellDeieesakligavNTlkle..dgk.....lvgynTDgiGlvssLek.lsklksek...rvliiGAGGaakavaleLlkadkeviiaNRtvekaeelaerlqe.........lgeilalsleevelkk....vdliinatsaglsgeideaevkaellke...gklvvDlvynpletpllkeakkkgtkvidGlgMlvaQaalsFelwtgvepdvekvfeal 265
                 ++G+p++ S sp++hn a++  gl  +Y a ++e  ++ ++++ ++ a  + G++vT+P+K+ +l++lDe+++sa++igavNT+ ++   ++     l+g+nTD +G++ + e  + +  ++     +l++GAGG a a++ ++++ + +vi+ NRt +ka+ela+r+ +         + ei a s  e    +    + +++ +++a    e++e  ++++  ++   + +v+D +y+p  t l++ a + g++vi G +Ml +Q+  + e+wt    +   + +a+
  MMETSP1174-20130828|6379_1 426 LLGHPVQASPSPAMHNSAFERIGLPWNYRAYDTE--SVDDFVEkALSASDFGGASVTIPHKQTILPFLDELSPSAEAIGAVNTVIVKraSDNpgqrlLLGDNTDWLGIKRAVEArIPESSADDwggIALVVGAGGTAAAAVYAMQSLGLTVIVYNRTPSKAQELAHRFDNpdgaarvahVTEIEAGSIVEAAALSspvpIQVVVSTVPATAGFELPEWVLQQNFGDSsypPPVVLDAAYKPACTKLIEQATRGGCRVIMGAEMLLEQGMEQSEMWTHHRAPRHLMSRAI 712
                 79**************************998765..4555554155677899*******************************9754223323344589**************966555543322269****************************************999999887774444444443333322355689**************999888876655111469*******************************************9887666666655 PP

>> TIGR01093  aroD: 3-dehydroquinate dehydratase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   1.8e-32   1.8e-29       2     225 ..     191     410 ..     190     414 .. 0.89

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 1.8e-32
   TIGR01093   2 ilvpltakdleealeelekikevgaDivElRvDllkdvsseksveavaeqlsell..kdlplilTiRtqkeGGkfkgdeeerleelkeaieknlvdlvDiElkleeeavkelikeakkak..tkiilSnHdfektpskeelverlekaq.sldaDivKiavmaksieDvltLleitlkveeekdkplialsMgekGkisRvlgavlgsvltfgslgkasAPGQisvkel 225
                 ++++lt+ d++++l +l   +  ++D++E+R D+ ++   ++    + +q+s l+  + lp+++T+R++++ G f++d e+ +++ +    + +vd +D+E  +e   vk ++++a + +  t+++ S+H   +  s + +v++++  + +  aD +K++ +a s + ++ +++    ++     p ia+ ++e+G +sRvl+  +++v++ + +++ +APGQ++ +e+
  MMETSP1174-20130828|6379_1 191 FMLSLTFSDMAQVLPHLPTFE-SEVDLLEVRADMIECKDTKS----ILDQISLLRrhTFLPILFTVRSESQCGTFPDDPEALMDLCRV-GLRAGVDWLDVEACWEARHVKGVVEDASRRYpaTRLLGSYHVVGRYTSPDAVVDLFKTCHlDGRADAAKVVLTAFSETENFDVRKGVEAAA--LPCPCIAICLTEYGRLSRVLNLHMTPVTHKL-MPSVAAPGQLTPTEI 410
                 57899*************977.99************998886....66777776666889*******************999999955.55666********************999874449********************99986525569*****************999886664..89*****************************.**********98776 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     9e-08   9.3e-05     183     226 ..     551     593 ..     547     623 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9e-08
   TIGR01035 183 vlliGaGemaeLvakhLkekgvkkvlilnRtyekaekLakelee 226
                 +l++GaG +a+ ++ +++  g   v++ nRt +ka++La+++++
  MMETSP1174-20130828|6379_1 551 ALVVGAGGTAAAAVYAMQSLG-LTVIVYNRTPSKAQELAHRFDN 593
                 79*******************.89*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 1594.69
//
Query:       MMETSP1174-20130828|6389_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 774.57
//
Query:       MMETSP1174-20130828|6387_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.9   0.0      0.033   12.1   0.0    1.4  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     8e-06     0.033       1     122 [.      42     147 ..      42     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8e-06
   TIGR01662   1 klvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavl 122
                 ++++lD+Dg++ +   +    d +   +   +  + +++ G kvv+ +      r      ++ e+ves l +  + +d l a+p ++  yr  +++ + ++l++ n + + + v + D++l
  MMETSP1174-20130828|6387_1  42 RIIFLDIDGVICC--NF----DGRLEEERLAQLGRVVDATGAKVVLSSDWR---R-H---PHLVEQVESTLLR--MGVDCLGATP-QGALYRRIRPQEITQWLNQWNGLPIHDWVAMDDRDL 147
                 68**********4..33....333333446677889999999999888877...3.3...3577889999888..7889999999.6789****************9999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|6390_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 200.26
//
Query:       MMETSP1174-20130828|6388_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|6395_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|6396_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|6397_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1174-20130828|6393_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049    9.7   0.3       0.07    9.2   0.2    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ


Domain annotation for each model (and alignments):
>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   1.7e-05      0.07     100     130 ..     257     287 ..     228     308 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.7e-05
   TIGR02440 100 vaaihgaclggglelalachsrvcsdddktv 130
                   a h a l   l lal c srvc ++++ +
  MMETSP1174-20130828|6393_1 257 RVATHAAVLSHALRLALLCRSRVCKNNQRLR 287
                 3578********************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 2292.93
//
Query:       MMETSP1174-20130828|6398_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|6403_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-79  264.5   0.1    5.9e-79  264.0   0.1    1.2  1  TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
    2.2e-29  100.4   1.6    3.5e-27   93.2   0.1    2.8  2  TIGR01234 L-ribulokinase: L-ribulokinase
    1.4e-12   44.5   0.0    8.6e-12   41.9   0.0    1.9  1  TIGR01311 glycerol_kin: glycerol kinase
    6.4e-12   42.6   2.1      3e-11   40.4   0.0    2.4  2  TIGR01312 XylB: xylulokinase
    4.2e-09   33.7   0.0    5.7e-09   33.2   0.0    1.1  1  TIGR02628 fuculo_kin_coli: L-fuculokinase
    2.4e-05   20.9   0.0    4.7e-05   19.9   0.0    1.5  1  TIGR01314 gntK_FGGY: gluconate kinase
  ------ inclusion threshold ------
      0.024   11.0   0.0      0.035   10.5   0.0    1.1  1  TIGR02627 rhamnulo_kin: rhamnulokinase


Domain annotation for each model (and alignments):
>> TIGR01315  5C_CHO_kinase: FGGY-family pentulose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.0   0.1     1e-81   5.9e-79     237     541 .]       2     349 ..       1     349 [. 0.86

  Alignments for each domain:
  == domain 1    score: 264.0 bits;  conditional E-value: 1e-81
   TIGR01315 237 aaaelGlsaGiavasglidayaGaiGtvGakv...............aeskdvddvftklalvaGtstchlaitkkpvfvpGvWGPyrdaliPGyflaeGGqsaaGelldhllesheayeeakkeaeeakkniydylnerlkelaakt...saasvsalvkdlfvypdllGnrsPiadPnlrgviiGl.........dmerd.....kdslallylatleaiaygtrqivealtaaG...aviksillsGgaaqnellvqlladicdlPvlipdvqeavllGaailGakaagtaesleeamkrlskvgklvkp....reeta....kklhdrkyevflqlartqkeyr 541
                 aaa lGl++G++va+g+ida++G++G++Ga+                  s++      ++al+ Gts ch+ ++ k  fv+G+WGPy +a+iPGyfl+e GqsaaG+lldh+   h a  e++  a++ +k+ y+ ln  ++++a +    ++ +v+ l+kdl+v pd++GnrsP+ dP +rg++ G+          +e +     +++l l ylat++a+ay+t++i+++l++      ++  i+++Gg+++n l+++ +ad+ +  +++p+++eavllGaa+lGa+a+g    ++ am  + ++g++++p     ++t      ++h  ky+vf+++ + q+ yr
  MMETSP1174-20130828|6403_1   2 AAAGLGLQSGTSVAVGIIDAHSGGLGLLGARLdteeggggiddeessSSSRSSVCLEERMALISGTSCCHMFTSSKQLFVEGIWGPYDSAMIPGYFLNEAGQSAAGKLLDHMTANHAAAPELEALAKARGKSRYEVLNSVVEDMAVRDlgvEKRKVGLLTKDLHVTPDVFGNRSPYGDPLMRGALSGItpagtltgiVNENNgvslaLEDLGLVYLATVQALAYQTKHIIDTLQESDehtPPLSHIFVAGGLSKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTAMSFMNRAGEVIQPfkveCDDTCdislPSFHACKYQVFRKMIDDQRVYR 349
                 8999***************************9**********9876533333333568***************************************************************************************9753336789***************************99866522221221145544222225778899******************998764224689****************************************************************999873322122222224589*****************98 PP

>> TIGR01234  L-ribulokinase: L-ribulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0046       2.7     252     275 ..       2      25 ..       1      32 [. 0.87
   2 !   93.2   0.1     6e-30   3.5e-27     284     503 ..      59     310 ..      40     320 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0046
   TIGR01234 252 aakllGlpegvvvavgnvdahvsa 275
                 aa+ lGl  g+ vavg +dah + 
  MMETSP1174-20130828|6403_1   2 AAAGLGLQSGTSVAVGIIDAHSGG 25 
                 58889****************875 PP

  == domain 2    score: 93.2 bits;  conditional E-value: 6e-30
   TIGR01234 284 gklvkiiGtstcdvllgeklravkGicGvvdggivpGfiGyeaGqsavGdifaWfvkvl.vppelkeeakekqlqllealsekaakqesge.......hglvaldWfn.....GnrsvlvdarlkGvlvglt................la.tkaeelyralveatafGtrmivetfkes...GvaveellaaGGiaeknplvmqiyadvlnlplkivasdqapalGaaifaavaageyadipkaaakmgsave 503
                 +++  i Gts c+++ + k+  v+Gi G  d++++pG++  eaGqsa G   + ++ +    pel+  ak+++++ +e l   + + ++ +        gl++ d +      Gnrs+  d  ++G l g+t                la  +   +y a v+a a+ t+ i++t++es     ++ ++++aGG+  kn+l +   adv++  + +   + a  lGaa+ +a a g y+d+ +a + m +a e
  MMETSP1174-20130828|6403_1  59 ERMALISGTSCCHMFTSSKQLFVEGIWGPYDSAMIPGYFLNEAGQSAAGKLLDHMTANHaAAPELEALAKARGKSRYEVLNSVVEDMAVRDlgvekrkVGLLTKDLHVtpdvfGNRSPYGDPLMRGALSGITpagtltgivnenngvsLAlEDLGLVYLATVQALAYQTKHIIDTLQESdehTPPLSHIFVAGGL-SKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTAMSFMNRAGE 310
                 689999************************************************998764789****99999998777776555444443311111114677778874444559***998876555555443111111111111111122123456899*****************9873224699*********.9***********************************************999987654 PP

>> TIGR01311  glycerol_kin: glycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.5e-14   8.6e-12     341     466 ..     164     308 ..     155     326 .. 0.71

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.5e-14
   TIGR01311 341 vyfVPafsGLfaPyWdsdArgtivGltrkttkehiar.................aaleavafqardileamekdag..vevkvLkvDGglsknnllmqiqadilgvkverpkvaettalGaAlaaglavgvwkseeeleksaeae 466
                 +++ P   G  +Py d+  rg++ G+t   t + i++                 a+++a+a+q++ i++++++  +    ++++ v Gglskn+l +++ ad+ g  ++ p+  e+  lGaA++ ++a g++++ +++ + ++++
  MMETSP1174-20130828|6403_1 164 LHVTPDVFGNRSPYGDPLMRGALSGITPAGTLTGIVNenngvslaledlglvylATVQALAYQTKHIIDTLQESDEhtPPLSHIFVAGGLSKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTAMSFMNRA 308
                 5566666666666666666666666665544433332112222222222222239****************87555336789**********************************************99988877766655554 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.6       1.4   8.3e+02     219     244 ..       3      28 ..       2      29 .. 0.86
   2 !   40.4   0.0   5.1e-14     3e-11     302     461 ..     136     314 ..     125     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.4
   TIGR01312 219 akklGleegvkvaaGggdnaagAiGl 244
                 a+ lGl++g+ va G  d  +g +Gl
  MMETSP1174-20130828|6403_1   3 AAGLGLQSGTSVAVGIIDAHSGGLGL 28 
                 56799**********99999998885 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 5.1e-14
   TIGR01312 302 ewlkellgeldveelneeaekvevgaegvlllPylsGERtPhldpqargsliGlt.antt........rad........larAvlegvafalrdsldilkelkg..lkikeirliGGGaksevwrqiladilglevvvpeeeegaalGaAilAaialgekdlveecseavvkqkesvep 461
                 e+l+++++++ v++l  e  kv   ++ + ++P + G R P+ dp +rg l G+t a t                    +  A+++++a+  ++ +d l+e +    ++++i + GG +k+++++++ ad++g+++v pee+e++ lGaA+l+a+a g +++v ++ +++ ++ e ++p
  MMETSP1174-20130828|6403_1 136 EVLNSVVEDMAVRDLGVEKRKVGLLTKDLHVTPDVFGNRSPYGDPLMRGALSGITpAGTLtgivnennGVSlaledlglVYLATVQALAYQTKHIIDTLQESDEhtPPLSHIFVAGGLSKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTAMSFMNRAGEVIQP 314
                 56777888999999999999999999************************999984332211111111112111111112359999999*99999***998654115789*********************************************999877777777766666655555 PP

>> TIGR02628  fuculo_kin_coli: L-fuculokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   9.8e-12   5.7e-09     356     464 ..     203     314 ..     183     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 9.8e-12
   TIGR02628 356 eGlslft.trGeiyraaleglakklkrrldvlekvsqlka..kelvvvGGGsknvlwnqiranaldlpvkvvddaeatvlGaalfafaGvGiyedveeaqaqlkpslrvvyp 464
                 +G+sl     G +y a+++ la + k+ +d l++  +     +++ v GG skn l+ + +a++   ++ + +++ea +lGaa+++ +  G y dv +a + ++ +  v++p
  MMETSP1174-20130828|6403_1 203 NGVSLALeDLGLVYLATVQALAYQTKHIIDTLQESDEHTPplSHIFVAGGLSKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTAMSFMNRAGEVIQP 314
                 688886515799********************9987765323778888999*************************************************999998888877 PP

>> TIGR01314  gntK_FGGY: gluconate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     8e-08   4.7e-05     401     471 ..     243     314 ..     156     326 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 8e-08
   TIGR01314 401 tlkmikatggfaksevwrqllsdifesevvvpesyessclgaiilglkavgkiedlsa.vssmvgaterytp 471
                 +l+ i  +gg++k  ++ +  +d+  + +v+pe  e+  lga +lg  a g   d+ + +s m  a e  +p
  MMETSP1174-20130828|6403_1 243 PLSHIFVAGGLSKNRLYLETHADVTGAAIVLPEESEAVLLGAAVLGATAGGCYSDVTTaMSFMNRAGEVIQP 314
                 4678999********************************************999986515556556666666 PP

>> TIGR02627  rhamnulo_kin: rhamnulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     6e-05     0.035     368     432 ..     222     289 ..     215     309 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6e-05
   TIGR02627 368 slallyrqvleelaelrgk..disklyivGGGsqnallnqliadlcgievia.GpveasalGnlgvql 432
                 +la   +++++ l+e  ++  ++s++++ GG s+n+l     ad++g  ++    +ea  lG  ++  
  MMETSP1174-20130828|6403_1 222 ALAYQTKHIIDTLQESDEHtpPLSHIFVAGGLSKNRLYLETHADVTGAAIVLpEESEAVLLGAAVLGA 289
                 55666667788888776543379************************986541789999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1382.00
//
Query:       MMETSP1174-20130828|6409_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|6404_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-06   24.8   0.0    4.6e-06   23.9   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      0.003   14.7   0.0     0.0043   14.2   0.0    1.1  1  TIGR00755 ksgA: dimethyladenosine transferase
  ------ inclusion threshold ------
      0.043   11.4   0.0      0.062   10.9   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.3e-09   4.6e-06      32     151 ..     100     222 ..      90     226 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.3e-09
   TIGR01983  32 yikekikkklkkne....kkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk..kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfl 151
                 +++++++ ++   +     + +  +v++vG+G G ls  + + g     i  + el + A ++ + +++   + +   +++e +        D+v ++ +lEHv++++e l++  e++k gg lf+
  MMETSP1174-20130828|6404_1 100 FVTRRAAAQVALIArnisPETKLETVVEVGAGWGALSGHMMECGSPFPEIASTFELDSEAVEFMRGKGIDahHGRLDDCTIERF---GPGMVDLVCSSMMLEHVPMPQEALRAWGERIKVGGHLFI 222
                 56666665555544223333346789*********************9999999999999999999988733334445555555...46789*********************************8 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.2e-06    0.0043       6      70 ..      90     166 ..      86     176 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.2e-06
   TIGR00755   6 slGQnflidesvlqkiveaaevee........sdvvlEiGpGlGaLTeellekakk....vvaiEiDkrlaekLrkk 70 
                 +l+Qn +i + v ++  +++ + +         ++v+E+G+G GaL+ +++e  ++      ++E+D++ +e +r k
  MMETSP1174-20130828|6404_1  90 DLSQNAVIPPFVTRRAAAQVALIArnispetkLETVVEVGAGWGALSGHMMECGSPfpeiASTFELDSEAVEFMRGK 166
                 67777777777777666655544434555555789****************99887444457899999999988765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.5e-05     0.062      32     133 ..     119     223 ..     102     273 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.5e-05
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                 +++ ++v ++G+G G+l+ ++++  +    ia  +    +++  ++ +   +++    d    ++    +Dl+ S++ l  +  ++e+l+   + +k gG l + 
  MMETSP1174-20130828|6404_1 119 ETKLETVVEVGAGWGALSGHMMECGSPFPEIASTFELDSEAVEFMRGKgidAHHGRLDDCTIERFGPGMVDLVCSSMMLEHVPMPQEALRAWGERIKVGGHLFIE 223
                 555669*************99998766555555554444444444444334666667777777777888****************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1271.89
//
Query:       MMETSP1174-20130828|6412_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.3   1.4        1.1    7.1   0.4    2.6  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
     0.0049   14.6   1.9      0.034   11.9   0.4    2.4  2  TIGR03807 RR_fam_repeat: putative cofactor-binding repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.4   0.00056       1.1      14      26 ..      44      55 ..      42      57 .. 0.72
   2 !    6.6   0.0    0.0008       1.6       5      27 ..      61      82 ..      60      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00056
   TIGR01376 14 gsGGAIyatgkis 26
                g+GG+Iya  + +
  MMETSP1174-20130828|6412_1 44 GRGGGIYAY-DTV 55
                49*****96.555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0008
   TIGR01376  5 ilFsnNsakgsGGAIyatgkisi 27
                ++F n sa+ +GG+++ +   ++
  MMETSP1174-20130828|6412_1 61 VTFMNFSATVRGGGLFVD-HGTL 82
                5677778888****9998.7777 PP

>> TIGR03807  RR_fam_repeat: putative cofactor-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.4   1.7e-05     0.034       6      19 ..      45      57 ..      44      57 .. 0.95
   2 ?    1.2   0.0     0.037        77       5      12 ..      70      77 ..      65      80 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
   TIGR03807  6 agvGiYlefdavit 19
                +g+GiY ++d+vi+
  MMETSP1174-20130828|6412_1 45 RGGGIY-AYDTVIS 57
                79****.******8 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.037
   TIGR03807  5 vagvGiYl 12
                v+g+G+++
  MMETSP1174-20130828|6412_1 70 VRGGGLFV 77
                89999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|6416_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1136.81
//
Query:       MMETSP1174-20130828|6419_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|6421_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|6422_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-62  207.7   0.0    3.9e-62  207.4   0.0    1.0  1  TIGR00235 udk: uridine kinase
    1.2e-08   32.5   0.0    1.8e-08   32.0   0.0    1.2  1  TIGR00554 panK_bact: pantothenate kinase
     0.0034   15.3   0.0     0.0053   14.6   0.0    1.3  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
  ------ inclusion threshold ------
      0.039   11.6   0.0       0.21    9.2   0.0    1.9  2  TIGR00152 TIGR00152: dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.0   3.9e-65   3.9e-62       7     205 ..      42     243 ..      36     245 .. 0.95

  Alignments for each domain:
  == domain 1    score: 207.4 bits;  conditional E-value: 3.9e-65
   TIGR00235   7 iiigiaGasgsGkttvaekivellkkekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgk.avdvPvYdyvehtr..kketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDliiPeggknevainllkakiksl 205
                 + +g+aG+ +sGkt v+++ivell++e +++isqD+yY+ l++ e+++  ++nfDhP+a++ d + e l +L++ + +v vP Yd+  ht+  ++  ++v+   +vi eGil+l    +rdlld+k+fvdtd+d+rl+rr++rD+ +rGr+ld+++ qy+++v+p +  +  p+++yaD+++P+g +n+v i+++  +++ l
  MMETSP1174-20130828|6422_1  42 FFLGVAGGTASGKTCVVNRIVELLGHEGVAVISQDCYYRGLNEAEREDAANYNFDHPEAFNFDSISETLLALRQRSaSVSVPQYDFTTHTQmpREYDTHVNSPAIVIFEGILALHSPAVRDLLDMKVFVDTDADVRLARRIKRDMADRGRDLDGILMQYERFVKPSFDAYCAPQRQYADVVLPRGLENQVGIQMVVENLRAL 243
                 5689********************************************************************9876269***********95456689*************************************************************************************************9998876 PP

>> TIGR00554  panK_bact: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.7e-11   1.8e-08      76     212 ..      38     172 ..      31     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.7e-11
   TIGR00554  76 akipyiisiaGsvavGksttarilqkllsrlpeerkvelittdGflyptaklkkknllk.kkGfpesydvkklvkfladlksGkdnvtapvyshltydviedkfev.vekadilileGlnvlqsgtdkddetdrvfvsd 212
                 + +p+ +++aG  a Gk+     + +ll     ++ v +i+ d +   +++  +++  + +   pe+++ + + + l  l+    +v  p y   t+  ++ ++++ v+ + i+i+eG+  l s++ +d  + +vfv  
  MMETSP1174-20130828|6422_1  38 TCTPFFLGVAGGTASGKTCVVNRIVELLG----HEGVAVISQDCYYRGLNEAEREDAANyNFDHPEAFNFDSISETLLALRQRSASVSVPQYDFTTHTQMPREYDThVNSPAIVIFEGILALHSPAVRDLLDMKVFVDT 172
                 568**************987666666775....578***********99998776665516689**********************************999887764999*****************998889999965 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.2e-06    0.0053       2      33 ..      44      73 ..      43      88 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.2e-06
   TIGR00176  2 lqivgykdsGKTtlieklvkelkargyrVati 33
                l+++g   sGKT +++++v+ l ++g  Va+i
  MMETSP1174-20130828|6422_1 44 LGVAGGTASGKTCVVNRIVELLGHEG--VAVI 73
                6899**********************..5555 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0002      0.21       2      35 ..      44      80 ..      43      93 .. 0.72
   2 ?   -0.1   0.0      0.15   1.5e+02     106     148 ..     145     188 ..     130     205 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0002
   TIGR00152  2 igltGgigsGKstvakilkdkyk...lpvidADkiar 35
                 g+ Gg +sGK+ v++++ +  +   + vi  D + r
  MMETSP1174-20130828|6422_1 44 LGVAGGTASGKTCVVNRIVELLGhegVAVISQDCYYR 80
                599***********99987653212266777666665 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
   TIGR00152 106 alvlldvpLlfen.kleklvdkvivvevskelqlerlmkrdels 148
                 a+v+++  L +++   ++l d  + v+ ++++ l+r +krd  +
  MMETSP1174-20130828|6422_1 145 AIVIFEGILALHSpAVRDLLDMKVFVDTDADVRLARRIKRDMAD 188
                 55566555555544788999999999999999999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 854.63
//
Query:       MMETSP1174-20130828|6428_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|6426_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-11   39.0   0.0    3.9e-10   36.9   0.0    2.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.1e-10   38.4   0.0    2.6e-10   37.2   0.0    1.6  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.5e-05   18.9   0.0    7.2e-05   18.5   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    0.00011   18.1   0.1    0.00019   17.4   0.0    1.2  1  TIGR02621 cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc
     0.0027   13.8   0.9     0.0036   13.4   0.2    1.7  2  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0045   13.5   0.0     0.0064   13.0   0.0    1.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   5.7e-13   3.9e-10     249     324 ..      82     157 ..       9     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 5.7e-13
   TIGR00614 249 kglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglks 324
                 +g + ++ h  l++ +r++v   + r +   +vat   G G++ p +R+v+ y+ p s+e+Y   +GR+GR++ ++
  MMETSP1174-20130828|6426_1  82 NGPEIRSLHGTLDQTTRDSVLDAWRRRQFTTLVATDVAGRGLDMPFLRHVLNYDFPPSLEQYAHRIGRSGRNQNEA 157
                 45667889***************************99**********************************86544 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   3.8e-13   2.6e-10     243     322 ..      78     157 ..       2     188 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 3.8e-13
   TIGR01389 243 aLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlka 322
                   e +g e    h+ l++ +R+  ++++ + + + +vat   G G+d +  R+v+ +d P +le+y    GR+GR+ ++a
  MMETSP1174-20130828|6426_1  78 IKEDNGPEIRSLHGTLDQTTRDSVLDAWRRRQFTTLVATDVAGRGLDMPFLRHVLNYDFPPSLEQYAHRIGRSGRNQNEA 157
                 345677788899***************************************************************74433 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-07   7.2e-05     271     350 ..      78     157 ..      46     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-07
   TIGR04121 271 aneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldep 350
                 ++e+   ei   Hg+ld+++R+ v +a ++ ++ ++v+T     G+D   +  v++   p ++     RiGRs+ + +e+
  MMETSP1174-20130828|6426_1  78 IKEDNGPEIRSLHGTLDQTTRDSVLDAWRRRQFTTLVATDVAGRGLDMPFLRHVLNYDFPPSLEQYAHRIGRSGRNQNEA 157
                 566666778889*************************************************************9988776 PP

>> TIGR02621  cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-07   0.00019     258     396 ..      13     156 ..       3     161 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-07
   TIGR02621 258 ldpqkdekrlaeevkeldl.klkdsgeailVfvrtvdevkkvvakLkkearrledltgtvrglerdtlarkg.....eilarflppsrtgs..earpqqgtvyvVaTsalEVGvdldfdhLvtdlapieslvqRfGRvnRlGerlda 396
                 ++   d kr  +++k l++ +  ds   +l+f++++ +v+ v+ +L k +     +  +  ++ r+  ++++       l+  l ++ ++s  +a  + + + +VaT     G d+ f   v +     sl q   R+ R G  ++ 
  MMETSP1174-20130828|6426_1  13 IHVCADHKRPKKMIKWLNKvRASDSLVPVLIFCNKITTVESVTHQLTKSL---FSQGRKAVVARREAKIKEDngpeiRSLHGTLDQTTRDSvlDAWRRRQFTTLVATDVAGRGLDMPFLRHVLNYDFPPSLEQYAHRIGRSGRNQNE 156
                 5666799999999999985267899999********************99...44444445555665666542221156888999999988556899999******************99999988889999999999999987775 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   5.3e-06    0.0036     464     556 ..      80     167 ..       6     290 .. 0.77
   2 ?   -2.0   0.2      0.25   1.7e+02     566     638 ..     255     338 ..     241     341 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.3e-06
   TIGR00631 464 kelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvilyadkite 556
                 ++ g  ++ lh  +d   r ++++  r+ +f  lv  ++   GlD+P    v  l+ d   f  s +     iGr+ rn +  v  y     +
  MMETSP1174-20130828|6426_1  80 EDNGPEIRSLHGTLDQTTRDSVLDAWRRRQFTTLVATDVAGRGLDMPFLRHV--LNYD---FPPSLEQYAHRIGRSGRNQNEAVEGYQGAAMS 167
                 556778999**************************************87665..5555...77788888899999999999999888766544 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.25
   TIGR00631 566 errrkiqieyneehgitPktikkkikeilekkekekekeakkkkkk...........aaeeaeklsekelkklikklekemkea 638
                 +r r  q+e  +   ++P   + + ++ ++ +++++++++++++++           + + +e+++ek++ ++i++l  ++++ 
  MMETSP1174-20130828|6426_1 255 KRSRCSQEEKEKPVRKKPALTHGRAEASVDFEKASSREASAEESDEthasvttsplkEPAPQEQTEEKDACSIIQRLGMDLQNL 338
                 445666666666666777666666666666554444444444433345566666654335566677777777888877777665 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.4e-06    0.0064     454     526 ..      44     127 ..       5     155 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.4e-06
   TIGR00643 454 vyplieesekl..........elkaaealleelkkaf.pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPn 526
                  +  i   e++          + ++a    +e k +  +  ++  lhg l +  +++vl ++r ++   LvaT v   G+d+P 
  MMETSP1174-20130828|6426_1  44 FCNKITTVESVthqltkslfsQGRKAVVARREAKIKEdNGPEIRSLHGTLDQTTRDSVLDAWRRRQFTTLVATDVAGRGLDMPF 127
                 455566666553333333333222222222222222224456778*************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.44
# Mc/sec: 1049.91
//
Query:       MMETSP1174-20130828|6429_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|6424_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 1803.85
//
Query:       MMETSP1174-20130828|6432_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1174-20130828|6435_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-26   90.5   0.0    2.3e-26   90.4   0.0    1.0  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    9.3e-12   42.3   0.1      1e-11   42.1   0.0    1.0  1  TIGR03862 flavo_PP4765: uncharacterized flavoprotein, PP_4765 family


Domain annotation for each model (and alignments):
>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   1.1e-29   2.3e-26     315     400 ..       3      88 ..       1      89 [. 0.98

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 1.1e-29
   TIGR00275 315 aaelskkeleklvellkklefkvsgtegfkeaevtaGGVslkeinpktmesklvkglYfaGEvlDvdgktGGYnlqaAwssGylag 400
                 +a++sk++ ++l++++ ++e++  g+++ ke++v aGGV+lk++  + + s++++gl faGE+lDvdg tGG+n+q Aw++G +ag
  MMETSP1174-20130828|6435_1   3 WASVSKDQGQRLARAVCRMELEFVGKSPHKEEFVVAGGVRLKDLRMSSCSSRHIPGLAFAGEILDVDGVTGGFNFQSAWTTGAAAG 88 
                 899**********************************************************************************9 PP

>> TIGR03862  flavo_PP4765: uncharacterized flavoprotein, PP_4765 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     5e-15     1e-11     289     375 ..       8      95 ..       2      96 .. 0.92

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 5e-15
   TIGR03862 289 ldapealaqtikalplklaglrpldeaistaGGvkqeald.eklmlkarpGvfcaGemldWeaPtGGylltaClatgraagrgvaswl 375
                 +d+ + la+++ +++l+++g  p +e    aGGv+ + l   +   +  pG+  aGe+ld +  tGG+ +++ ++tg aag+g+a+++
  MMETSP1174-20130828|6435_1   8 KDQGQRLARAVCRMELEFVGKSPHKEEFVVAGGVRLKDLRmSSCSSRHIPGLAFAGEILDVDGVTGGFNFQSAWTTGAAAGEGIARYV 95 
                 567889******************************9997256778899***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|6437_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1243.90
//
Query:       MMETSP1174-20130828|6436_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-44  147.0   0.0    1.9e-31  106.9   0.0    2.1  2  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   5.5e-14   2.3e-10       7      54 ..       2      49 ..       1      54 [. 0.93
   2 !  106.9   0.0   4.6e-35   1.9e-31      52     188 .]      69     205 ..      62     205 .. 0.97

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 5.5e-14
   TIGR00438  7 akkekyrsrasfkllqlnekfklikkGklvldlGaaPGGWsqvavekv 54
                ak  ++r+r++fkllql+e+f+l+   ++ +dl aaPG Wsqv ++++
  MMETSP1174-20130828|6436_1  2 AKEVGFRARSAFKLLQLEEEFDLFSGVERAVDLCAAPGSWSQVLASRI 49
                88899**************************************98876 PP

  == domain 2    score: 106.9 bits;  conditional E-value: 4.6e-35
   TIGR00438  52 ekvgekGlviavdlqpvkpienvdfirGdftdeevlekilervgddkvdvvisdaaPnlsGirdidhlrsidlvelaldiakevlkekGnfvvkvfqGeeldeylkelrklfekvkvrkPeasrkrsaevyivakrf 188
                 + v e+ +++avdlq + pi +v+ i+Gd+t  e+ e i+++ g+ k+d+vi d aP+++G +did     +l  +al i++++l+e+G fv+k+f+G ++  +  + r  f+ v v kP +sr+ s e +iv+++f
  MMETSP1174-20130828|6436_1  69 KCVNEREKIVAVDLQAMAPIGGVRQIQGDITTMETAESIIAHFGGLKADIVICDGAPDVTGLHDIDEFVQAQLLLAALTITTHMLRENGTFVAKIFRGRDVSLLYSQYRMFFDLVTVAKPRSSRNSSIEAFIVCQGF 205
                 56889999*****************************************************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1174-20130828|6440_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|6443_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.2   0.4     0.0036   15.2   0.1    1.5  1  TIGR02744 TrbI_Ftype: type-F conjugative transfer system protein TrbI
     0.0036   12.8   4.3     0.0038   12.8   3.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.018   11.7   3.8      0.022   11.5   2.6    1.2  1  TIGR00019 prfA: peptide chain release factor 1
      0.068    9.2   3.7      0.085    8.9   2.5    1.2  1  TIGR00344 alaS: alanine--tRNA ligase
      0.074   10.1   2.1      0.089    9.8   1.4    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02744  TrbI_Ftype: type-F conjugative transfer system protein TrbI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.4e-06    0.0036      39      88 ..      67     117 ..      64     129 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.4e-06
   TIGR02744  39 mkqtldaffdslsqkklseaqqkkllk.rfnalleaeLqawqaqhhaviLv 88 
                 +k+ +d   +++ +k+++++++ +l +  ++a  +a Lq+w+  h  +++v
  MMETSP1174-20130828|6443_1  67 VKEEVDVELEKIQEKEADLREELRLKNaMYMAEVNARLQDWEVMHSMILMV 117
                 688899999999********9999876269******************998 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   3.0   4.6e-06    0.0038     683     765 ..      11      93 ..       2     134 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.6e-06
   TIGR02169 683 rleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkele 765
                 +  +L +   +l+++++++e++  +l+++++ ae+ ++ +++++++l+  + kl+   ee+  +l++++e+ ++ +eel   +
  MMETSP1174-20130828|6443_1  11 ENSKLIEGNTFLRRKITKVERENTHLRHSADTAEATMKLLSQHAKALAMAHMKLAGVKEEVDVELEKIQEKEADLREELRLKN 93 
                 44455555555555555555555555555555555555555555555555555555555555555555555555555554222 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.6   2.7e-05     0.022      34     101 ..      24      91 ..      11     118 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.7e-05
   TIGR00019  34 kklrklskeysqleeivkkyeeykklqedlkeakellekedkelrelakeeleelekkieeleeqlkv 101
                 +k++k+++e ++l++  ++ e   kl ++ ++a ++++ + + ++e+++ ele++++k ++l e+l++
  MMETSP1174-20130828|6443_1  24 RKITKVERENTHLRHSADTAEATMKLLSQHAKALAMAHMKLAGVKEEVDVELEKIQEKEADLREELRL 91 
                 6899**********************************99***********************99975 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.5    0.0001     0.085     685     785 ..      35     130 ..       2     148 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0001
   TIGR00344 685 vrRieavageeaiellkeeekkLkeladkLkkeleelakkveklkeelkalrkeleslkkkiakqkaeelkekaetieelkvlvekvdakekkelkelade 785
                   R  a ++e++++ll+++ k L  ++ kL    ee++ + ek++e++ +lr+el+ lk+      ++e+  + ++ e ++ ++  v+  ++ +  el+ +
  MMETSP1174-20130828|6443_1  35 HLRHSADTAEATMKLLSQHAKALAMAHMKLAGVKEEVDVELEKIQEKEADLREELR-LKNA---MYMAEVNARLQDWEVMHSMILMVKD-DPASSPELITN 130
                 33445555556666666666666666666666666666666666666666655543.3333...2333333333333333333333333.33333344433 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   0.00011     0.089      65     141 ..      16      93 ..      11     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
   TIGR03752  65 vaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle..d 141
                 +  +  lr++++k+e+eN++l++  ++ +++  ++ ++ ++al+ ++ +l+  ke++  e +k++e+ ++l+++l+  +
  MMETSP1174-20130828|6443_1  16 IEGNTFLRRKITKVERENTHLRHSADTAEAT-MKLLSQHAKALAMAHMKLAGVKEEVDVELEKIQEKEADLREELRlkN 93 
                 5556678999999999999999888888777.66667778899999999999999999999999999998888776432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1174-20130828|6442_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1019.08
//
Query:       MMETSP1174-20130828|6439_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.8   0.0      0.092   10.6   0.0    1.5  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II


Domain annotation for each model (and alignments):
>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.2e-05     0.092      61     123 ..     320     382 ..     316     403 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR01428  61 aealkalleelgleleeaaaerlveavkrLepfpdvaagLkkLkerglklviLsNgstatlks 123
                   a++ l+++ +l+ + a++e+l + ++rL ++ d++a+ k+ ++  + ++   N+ + ++++
  MMETSP1174-20130828|6439_1 320 STAVRLLCAHSKLAGQVALEEKLFSVLERLAAYGDSLAVQKNAATSFYSVLGFENARKSMVQK 382
                 6799*****************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 1378.55
//
Query:       MMETSP1174-20130828|6441_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1385.89
//
Query:       MMETSP1174-20130828|6444_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.24s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1338.22
//
Query:       MMETSP1174-20130828|6448_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|6449_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|6450_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|6446_1  [L=849]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   16.6  29.6    0.00039   16.1  20.5    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0012   16.7   0.0     0.0031   15.4   0.0    1.6  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
     0.0057   12.2  25.4     0.0084   11.6  17.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.048   10.7   4.5        0.3    8.0   1.9    2.2  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  20.5   3.8e-07   0.00039     742     904 ..     618     780 ..     588     818 .. 0.48

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.8e-07
   TIGR02168 742 keveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelsee 904
                 ke+ ++e++la l+++l e +e r++ ee+   ++e+l +a +e ++ +++ + +++ l++++++l+ l++e  +l+ee a+++++++++e+e ++l+++++++e++++ l++++++l++++ +l++++e+   ele++ ++ ++l+e+l+  ++ + +  + 
  MMETSP1174-20130828|6446_1 618 KEQAKMENQLALLKRRLDEEAEARKQMEEDNRALQERLTNAAQEGVASTSTTRVDQSILDESNKMLQYLQKENGKLNEENASLRREMTKMERENKHLHHSADTAEATMKVLSQHAKALAKAHMKLTSSKEDVDVELERAAQKEERLKEELHMKQAMYIAEVNA 780
                 2333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444433333333 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06    0.0031       9      81 ..     403     480 ..     398     502 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3e-06
   TIGR02222   9 lrvGriveaedfpkarkPayklkvdlGeelGv...kk..ssaqitklykkeelvgrlvvavvnfppkriaglksevlv 81 
                 lr   ++ea    ++  P    ++++ +  G    k+  ssa + +l++ke+l    v++  nf++ r+a  ks v  
  MMETSP1174-20130828|6446_1 403 LRCAGVIEAIRISRSGFPNRMTHMEFCSRFGAltpKEslSSAMVHDLHRKEQLRIISVICSTNFATNRLAIGKSKVYF 480
                 5566666666666666666666666666666422233348******************************99999865 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  17.6   8.2e-06    0.0084     314     474 ..     616     776 ..     598     817 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.2e-06
   TIGR02169 314 keeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrk 474
                 +++e+ ++e++la ++ ++d+ +e  +++e++ ++ + + ++  +e  ++  + +  ++ l+e +k  + l++e  +l+e+  +l++e+ +++re+++l   +  +e+ ++ l ++ +++ +++ +l +++e+++ e+++a qk e+lke+l+  ++ + +
  MMETSP1174-20130828|6446_1 616 EAKEQAKMENQLALLKRRLDEEAEARKQMEEDNRALQERLTNAAQEGVASTSTTRVDQSILDESNKMLQYLQKENGKLNEENASLRREMTKMERENKHLHHSADTAEATMKVLSQHAKALAKAHMKLTSSKEDVDVELERAAQKEERLKEELHMKQAMYIA 776
                 34566677888888888888888888888888888888877777777777777777788888888888888888888888888888888888888888888888888888888888888888888899999999999988888888888888766655543 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.023        23     239     267 ..     292     320 ..     276     326 .. 0.87
   2 ?    8.0   1.9    0.0003       0.3     171     247 ..     674     750 ..     638     767 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.023
   TIGR00996 239 lsalsaqvrdllaenrpnLaqalanLasv 267
                 +++++ +v ++l++n+++L+++la+L + 
  MMETSP1174-20130828|6446_1 292 AGSVTYSVVGFLEKNKDTLQDDLAELMRA 320
                 67888999*****************9765 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0003
   TIGR00996 171 elleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvr 247
                  +l++++++++ l++  ++++e  ++l r ++ + ++++ l   +d++++++++l ++ +aL++a  +l++  ++v+
  MMETSP1174-20130828|6446_1 674 SILDESNKMLQYLQKENGKLNEENASLRREMTKMERENKHLHHSADTAEATMKVLSQHAKALAKAHMKLTSSKEDVD 750
                 6899************************************************************9988887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       495  (0.120673); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.20s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2606.02
//
Query:       MMETSP1174-20130828|6453_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 634.56
//
Query:       MMETSP1174-20130828|6456_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|6459_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 935.57
//
Query:       MMETSP1174-20130828|6455_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-20   70.1   0.1    2.4e-08   31.1   0.0    3.1  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.8e-12   2.4e-08       2     101 ..      48     152 ..      47     160 .. 0.72
   2 !   22.7   0.0   2.1e-09   8.5e-06     243     370 ..     261     399 ..     252     419 .. 0.73
   3 !   12.5   0.0   2.5e-06      0.01     396     461 ..     478     546 ..     472     572 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 5.8e-12
   TIGR03417   2 rpnililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefas......diptyahylraaGyktalsGkm 101
                 +p i++++ d    + +   +   +   P +++la ++v++dn y + P c+P+rasl++G+ P +ig+  +    as      +       l++aGy+t + Gk 
  MMETSP1174-20130828|6455_1  48 QPHIVLMLLDDAGWNDIGYNSYDMARSSPVMDKLALEGVKLDNYY-SQPQCTPTRASLMTGNYPISIGMQHDCITPASpwglplEYAIMPEMLQQAGYRTHMVGKW 152
                 5677777777654444433333335568*************9976.67*******************9976665444411111144455578************96 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.1e-09
   TIGR03417 243 iteeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerG.lw....ykmsffegsarvPllvaaperleagrveaavstv....dllPtlve.lagveleevlpaldGes...lvpllkgkerk 370
                 ite+   + r+   +a+   d+ +G++++ l+e    +++++v++sd G    +    w     k ++f+g+ rv  +v++p  ++agr +++v ++    d +Ptlve +ag  + e++  ldG +   ++ + kg+++ 
  MMETSP1174-20130828|6455_1 261 ITENITYTKRQKASGALYLADEAVGAVVHQLKELDYYKNSVLVVISDNGGSPSDGSnNWplrgAKKTYFQGGVRVFGFVHSPLLIAAGRGNTTVKSLfhvsDWVPTLVEgVAGYTTGETV--LDGVNqwnVIMNGKGDDGV 399
                 45554555667777888888****************************987665431453334599***********************99999764444699*****845555554433..4555400044444454444 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 2.5e-06
   TIGR03417 396 fvkceadPeqlydleadPkelenlaeepehaetlealraeaaarwdlealdaevr...esqarrrvvye 461
                 f++++++ + l+d+++dP e  nl ++ + +++ ++l +++   w+   +d+  r   e  +++r+ ++
  MMETSP1174-20130828|6455_1 478 FNVATNETHFLFDISTDPYEIVNLWDHQDFQNVRRRLIDQICVSWETRMVDTVYRpdvEGTKKKRMKAA 546
                 6778888999************************************98887755421133344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1847.85
//
Query:       MMETSP1174-20130828|6462_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1603.28
//
Query:       MMETSP1174-20130828|6469_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1624.72
//
Query:       MMETSP1174-20130828|6472_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 518.85
//
Query:       MMETSP1174-20130828|6468_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1663.06
//
Query:       MMETSP1174-20130828|6471_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1579.16
//
Query:       MMETSP1174-20130828|6476_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|6477_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 277.63
//
Query:       MMETSP1174-20130828|6482_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   64.3   0.0    1.6e-18   64.0   0.0    1.0  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    2.5e-09   33.6   0.0    3.1e-09   33.3   0.0    1.0  1  TIGR00484 EF-G: translation elongation factor G


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0     8e-22   1.6e-18     336     462 ..      61     187 ..      57     188 .] 0.94

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 8e-22
   TIGR00490 336 vgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisep.vvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepi 462
                 v ++mg   v+vd +pagn++av+gl   v+  +  +t+ +  a+ ++   + p ++ va+ea + +d   l + l+++   dp+v++ ++   ge +is +g+lhle   k+ r+ a+v++ +sep+
  MMETSP1174-20130828|6482_1  61 VFLMMGDALVPVDGVPAGNLCAVTGLETVVSKCATLATTANCPALRSLSFQARPgLIRVAVEAEDGRDTGALDKGLKRLHASDPAVEISVK-HGGERVISALGQLHLEHCLKELRDFARVPLRVSEPL 187
                 5578*************************99988899999************996789*******************************97.58*********************99*********97 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.5e-12   3.1e-09     365     473 ..      72     182 ..      57     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 1.5e-12
   TIGR00484 365 ieevraGdiaaliGlkdt.ttGdtlcdekaevilesmefpe.P.vislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevn 473
                 ++ v aG+++a+ Gl+ + +   tl+ + +   l s+ f   P +i +ave  +  d   + + l +l   dP+  + ++   g+ +i+ +G+lhl+  ++ l+   +v   
  MMETSP1174-20130828|6482_1  72 VDGVPAGNLCAVTGLETVvSKCATLATTANCPALRSLSFQArPgLIRVAVEAEDGRDTGALDKGLKRLHASDPAVEISVK-HGGERVISALGQLHLEHCLKELRDFARVPLR 182
                 77899**********98625689****99999****999642558******************************99886.57999***********999888765556555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|6484_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1174-20130828|6487_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.1   0.0      0.028   11.4   0.0    1.3  1  TIGR02261 benz_CoA_red_D: benzoyl-CoA reductase, subunit D
        1.7    6.4   8.2      0.078   10.8   0.9    2.0  2  TIGR02563 cas_Csy4: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST


Domain annotation for each model (and alignments):
>> TIGR02261  benz_CoA_red_D: benzoyl-CoA reductase, subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.4e-05     0.028     119     158 ..      60     100 ..      43     107 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.4e-05
   TIGR02261 119 kveaykmtsqcasgsgqfleniarylgiaqdeigs.lstra 158
                 k  a+km sq  sg+ q+ e++ r   i + ei s + t+a
  MMETSP1174-20130828|6487_1  60 KAPAFKMKSQRESGAAQLTEKLQRRQKINDGEITSsVNTQA 100
                 6679****************************976256666 PP

>> TIGR02563  cas_Csy4: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   3.8e-05     0.078      97     150 ..      64     115 ..      36     135 .. 0.79
   2 ?   -0.9   0.6      0.14     3e+02      86     115 ..     225     253 ..     210     259 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.8e-05
   TIGR02563  97 tvrrkqkkssaarlkkrlerrqlindEearkkikkkkekranlpylslksassg 150
                   ++ q+ s+aa+l+++l+rrq+ind e+   ++  ++ ++++py +  + s +
  MMETSP1174-20130828|6487_1  64 FKMKSQRESGAAQLTEKLQRRQKINDGEITSSVN--TQAQVFNPYTQFPEFSRE 115
                 45788999*******************9999886..5667999**998865554 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.14
   TIGR02563  86 skvpadkvkratvrrkqkkssaarlkkrle 115
                 +kv+++ +k+    r+q+++ ++++++ ++
  MMETSP1174-20130828|6487_1 225 NKVEDE-IKAERDLRRQAQEEKKKKREAFK 253
                 344444.44444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1009.33
//
Query:       MMETSP1174-20130828|6491_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 570.19
//
Query:       MMETSP1174-20130828|6488_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.8   0.0      0.087   10.5   0.0    2.0  2  TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit


Domain annotation for each model (and alignments):
>> TIGR00171  leuD: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0     0.077   3.2e+02     142     171 ..     306     335 ..     292     340 .. 0.80
   2 ?   10.5   0.0   2.1e-05     0.087      97     176 ..     444     523 ..     429     528 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.077
   TIGR00171 142 ltvdleaqkvkdsegkvysfeidefrkhcl 171
                    dl++ kv +  g  ++fe++  + ++l
  MMETSP1174-20130828|6488_1 306 WRDDLDNFKVINDRGDFHTFEVQISQGKML 335
                 5669*****************997776665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.1e-05
   TIGR00171  97 fkviiapsfadifynns..fkngllpirlseeeveellalvknkglkltv.dleaqkvkdsegkvysfeidefrkhcllnGld 176
                 +k+i   +f  if + s  ++n+l+ +rls + v+e l+ ++  g +l+v dl++  +    g++  fe  +   ++ lnG +
  MMETSP1174-20130828|6488_1 444 IKSIERRTFDSIFSSIStlLENNLIELRLSGQGVKENLEAIACVGSQLEVlDLNDTGIS---GNIGVFEHTPNLTELNLNGCN 523
                 677888889999987654489***************************98688887775...456777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.27s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 2207.82
//
Query:       MMETSP1174-20130828|6489_1  [L=1061]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.35s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 2979.58
//
Query:       MMETSP1174-20130828|6495_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1183.19
//
Query:       MMETSP1174-20130828|6501_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|6502_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|6497_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 1663.06
//
Query:       MMETSP1174-20130828|6500_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1501.82
//
Query:       MMETSP1174-20130828|6504_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1485.72
//
Query:       MMETSP1174-20130828|6506_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 172.16
//
Query:       MMETSP1174-20130828|6507_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|6508_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1022.92
//
Query:       MMETSP1174-20130828|6509_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|6510_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1119.78
//
Query:       MMETSP1174-20130828|6516_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 619.33
//
Query:       MMETSP1174-20130828|6515_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       392  (0.0955631); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 746.94
//
Query:       MMETSP1174-20130828|6512_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   15.8   0.7    0.00068   15.7   0.0    1.4  2  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3      0.18   7.4e+02     130     156 ..     105     131 ..      87     147 .. 0.70
   2 !   15.7   0.0   1.6e-07   0.00068     224     264 ..     254     296 ..     189     356 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 0.18
   TIGR04075 130 vrrqlkelrrslkklkreGfrkvyvlk 156
                  ++q++elrr  ++l++   r+ + l+
  MMETSP1174-20130828|6512_1 105 AQKQTEELRRVKRDLEKRKKRRRHPLN 131
                 367888888888888888777777765 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.6e-07
   TIGR04075 224 kavflGdlvdrGpdspdvlrlv..msmvkagaalcvpGnheek 264
                 +++flGd+vdrG +s +v+      ++++  + + ++Gnhe++
  MMETSP1174-20130828|6512_1 254 QILFLGDYVDRGMSSLEVVTYLiaLKVLNPSKVFMLRGNHETR 296
                 789***************98541156788999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.51
# Mc/sec: 1516.58
//
Query:       MMETSP1174-20130828|6518_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.10s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1205.74
//
Query:       MMETSP1174-20130828|6526_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|6522_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1527.77
//
Query:       MMETSP1174-20130828|6524_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-56  187.3   0.0    1.1e-55  186.9   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   2.6e-59   1.1e-55      55     422 ..     106     483 ..     101     488 .. 0.90

  Alignments for each domain:
  == domain 1    score: 186.9 bits;  conditional E-value: 2.6e-59
   TIGR01982  55 aleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkala....enlvesflkqvlrdgfFHaDlHpGNilvakd.......gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvps...dtdlaeleqairavgepivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvv 422
                 a+ + G ++iK  Q  stR+D++pe + e L+ Lq + p  ++++ rk+ie+ +g p+e +F++f+  P+A+ASiaQvh+Av  ++ +VavKv+ P ++++i+ d ++++ +a++++k  p +k l  ++ ++ f++t++    l  Ea + + +++nf++ ++   P+      se+vl+  + +g  vsd+    +    +  +a    +++    lk+ l+dg+ HaDlHpGNilv+ d       ++++++D G+v++l +ee+  ++ +l+++ e d  +     l+ +  +s       +++++++ a+         + i +g +L+ ++++++ + +++  + + L    l ++G+++q+ p ++++++++ ++
  MMETSP1174-20130828|6524_1 106 AIAQCGAAWIKWAQWASTRPDMFPEGLCERLAVLQTQAPQHSAAHTRKEIENTFGAPLESIFESFDFSPIASASIAQVHRAV-YRNITVAVKVRHPKVAERIAIDFRIMKAIAEWMDKQ-PLFKWLSLKDSIQAFSHTMTGQTWLDCEADHLTLFNRNFQHWHDADFPT--PLVSSESVLVETFENGALVSDHSGAAALSQLPVPIAhfvvTRGEDLYLKMLLADGLMHADLHPGNILVDFDpavgvesARLVLVDAGMVANLLPEEKFHFVGLLQAIGEGDGIKAGRHVLDFSEFQScasAECRHAFQEDMDAFFRTHCRGYGQGIDLGVVLKGILRLVRIHRVRIDVNYATLVMNALCLDGLAKQILPGHNVMDASKFLL 483
                 78899****************************************************************************6.6889*****************************997.5999************************************977777775..345799***************98777776666666611115666789***********************999999999********************************9887777777666554110445568999999999999999999**************************************************9988666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1592.67
//
Query:       MMETSP1174-20130828|6527_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1323.77
//
Query:       MMETSP1174-20130828|6530_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1174-20130828|6533_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1174-20130828|6529_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 335.32
//
Query:       MMETSP1174-20130828|6534_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   20.8   0.2    0.00023   18.6   0.1    2.1  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.036   11.3   0.6      0.065   10.5   0.3    1.5  1  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.1e-07   0.00023     101     169 ..       3      73 ..       1     166 [. 0.73
   2 ?    0.2   0.0     0.045        92     289     313 ..     183     207 ..     172     208 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-07
   TIGR01289 101 fsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagkvpi..kadlgdlsglea 169
                  + dgy++ + tnh+ hfll++  +  l+++ ek     i+   ++  +   g       ++ g+l g +a
  MMETSP1174-20130828|6534_1   3 ATVDGYDVQIQTNHMSHFLLAKETFTLLETAAEKRGEARIVNHSSGARNMTNGLEEKyfGPNGGNLGGNSA 73 
                 588*******************9999999999998888787777666665555333223556666655444 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.045
   TIGR01289 289 qelseevsddekakklwelseklvg 313
                 q++s++  d++  + lw++se   g
  MMETSP1174-20130828|6534_1 183 QKISKKENDTAAMSMLWKMSEEACG 207
                 899*****************98665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   3.2e-05     0.065     139     191 ..      74     128 ..      59     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.2e-05
   TIGR02415 139 agvegspelsaysstkfavrgltqtaakeLakkgitvnay..aPGivktemreei 191
                 +   g +    y+ tk a   +tq+ a++L ++   v a   aPG++ t+++ + 
  MMETSP1174-20130828|6534_1  74 SMLFGGARWKRYAQTKLANSVFTQALAEKLRASNSSVKAVsaAPGLASTNLQVTT 128
                 55566677789*******************9999999875338******998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 815.23
//
Query:       MMETSP1174-20130828|6539_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 517.54
//
Query:       MMETSP1174-20130828|6536_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.9    3.4  22.0         14    2.4  15.2    1.5  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  15.2    0.0035        14     294     379 ..       4      86 ..       1     103 [. 0.58

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0035
   TIGR00237 294 krqspknklaakeakleklekrlqaalekqlertrqkktrltkrleqlnpsp.klkraqtrleqlerrlnkllnaqlkekrekfgtl 379
                 ++q+ +++++++++  ++ + ++q +    +e+++q + + +++l+q+  sp ++++aq++ +  ++ +n++   q+  ++++ +++
  MMETSP1174-20130828|6536_1   4 QQQHEQQQHEQQQQ-AQQEQGQVQQQY-GSMEEMQQAQLQQQQMLQQQYGSPeEMQQAQQQQQ--NMMMNEAFMSQMGMQQQQQAAM 86 
                 45555555555444.344444444333.44566666666677888888888867887776555..5555555555665555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       639  (0.155778); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|6535_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   31.5  49.6    7.4e-06   22.5   0.1    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.4e-08   30.4  47.1    7.9e-06   22.9   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.1e-05   21.3   0.0    2.7e-05   20.9   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00029   17.9   0.1    0.00039   17.5   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   7.2e-09   7.4e-06     428     505 ..      95     168 ..      87     172 .. 0.91
   2 !   11.1  31.5   2.2e-05     0.022       5      86 ..     208     289 ..     201     309 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 7.2e-09
   TIGR01642 428 eeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedky 505
                 ++Y+e +e++ ee   +G++ + ++    +d+     vG v++++ d+++a+ A + l Gr +++r + + f +   +
  MMETSP1174-20130828|6535_1  95 DDYDEFYEEIYEELASFGKVEECNVCENLGDHI----VGNVYVKFEDEENADAALKALLGRFYAGRPLAVEFSPVTDF 168
                 68*************************999986....9****************************999999876555 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.2e-05
   TIGR01642   5 kdrerEksrerdrdkskeRsRkRsrdrsr.dRdRdrrdrrrsrrkdsRdRdrrrydsrsiss..leedsrrrSRdrirrrsrsss 86 
                 ++r+r   r +++++s+ R+R+R+ dr r dRdRdr+   r rr d+R+R+  r d r++++  +e+++rr+SR+ +r+r  + +
  MMETSP1174-20130828|6535_1 208 NKRSR-SRRSHSQERSRSRDRDRREDRGReDRDRDRE--PRDRRADDRHRRTDRDDTRDRREfrEEDSHRRKSRSGDRERTEDHN 289
                 33433.4566777777777777777776535677776..67899*******9999999988722456789******999887765 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.7e-09   7.9e-06     427     485 ..      99     160 ..      88     173 .. 0.79
   2 !    8.1  30.7   0.00024      0.24       8     102 ..     209     287 ..     193     304 .. 0.45

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 7.7e-09
   TIGR01622 427 eikdDvkeEcskkggvvhiyvdkk...nsaGkvYlkfdsveaalaavkalngRyFagklitA 485
                 e  +++ eE    g+v +  v ++    + G+vY+kf++ e+a aa+kal gR++ag+ ++ 
  MMETSP1174-20130828|6535_1  99 EFYEEIYEELASFGKVEECNVCENlgdHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAV 160
                 666778888888888877766543222789***************************97665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00024
   TIGR01622   8 eRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrresererereker...rredevrrkrkeredrrerr 102
                 +RsR++                   rs++ ersrs++rdr+ dr   drd+ r+++ r++ +r+++ +r+  ++r   r+ed+ rrk++  + +r  +
  MMETSP1174-20130828|6535_1 209 KRSRSR-------------------RSHSQERSRSRDRDRREDRGREDRDRDREPRDRRADDRHRRTDRDDTRDRrefREEDSHRRKSRSGDRERTED 287
                 222222...................3455555555566665555333444444444444333333333332222111133333332222222222222 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.6e-08   2.7e-05     520     594 ..      89     161 ..      64     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.6e-08
   TIGR01645 520 tPkdidetle...geireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                 +Pk i ++ +   +ei ee + fg v+   + ++  g      i+  ++v+f +  ++d a +al Grf++Gr +  e
  MMETSP1174-20130828|6535_1  89 DPKKIADDYDefyEEIYEELASFGKVEECNVCEN-LG----DHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAVE 161
                 566554433312279***********98766543.33....58999***************************88776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.8e-07   0.00039     300     375 ..     102     177 ..      91     292 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.8e-07
   TIGR01628 300 ekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf 375
                 e++ e+   fG++  ++v  +  ++  g  +V f ++e+A +A++ l g+   g+PL v +    + R ar +q  
  MMETSP1174-20130828|6535_1 102 EEIYEELASFGKVEECNVCENLGDHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAVEFSPVTDFREARCRQYD 177
                 5667888899999999999999999999999999999999999999999999999999999888888887776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1173.63
//
Query:       MMETSP1174-20130828|6540_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 927.92
//
Query:       MMETSP1174-20130828|6544_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   17.0   0.1      0.004   13.1   0.0    1.9  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.7e-07     0.004     128     151 ..       6      29 ..       2      42 .. 0.82
   2 !    3.3   0.0   0.00087       3.6     126     145 ..      39      58 ..      29      59 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.7e-07
   TIGR00870 128 ftkgitalilAihkqnyeivklLl 151
                   +g t+l++A+h+ n+ +v+ L 
  MMETSP1174-20130828|6544_1   6 TDNGATPLHMAAHNGNLDVVRYLA 29 
                 5689*****************985 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.00087
   TIGR00870 126 seftkgitalilAihkqnye 145
                  +   g t+l +A++ +n+ 
  MMETSP1174-20130828|6544_1  39 ATTDDGRTPLYIAAQMDNLD 58 
                 455679************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|6547_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1058.91
//
Query:       MMETSP1174-20130828|6548_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-12   41.3   0.0    8.4e-12   41.2   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    8.6e-12   42.1   0.0    1.1e-11   41.8   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.1e-08   30.4   0.0    3.7e-08   30.1   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    7.7e-08   28.9   0.0    9.5e-08   28.6   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-07   28.1   0.0    1.5e-07   27.9   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-07   26.9   0.0    4.3e-07   26.7   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.2e-07   26.5   0.0    6.7e-07   26.1   0.0    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.7e-07   25.7   0.0    7.6e-07   25.6   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    8.5e-07   25.8   0.0      1e-06   25.5   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
     0.0011   15.4   0.0     0.0015   15.0   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
  ------ inclusion threshold ------
      0.036   11.4   0.0      0.045   11.1   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.3e-14   8.4e-12    1460    1521 ..       3      66 ..       1      67 [. 0.90

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.3e-14
   TIGR00957 1460 iqstirt..qfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysmakdag 1521
                  iqs +r+   +++ tv+++ahrl+timd+  +lv++ g   ef++p +ll+ +gify + + +g
  MMETSP1174-20130828|6548_1    3 IQSMLRSleSLKHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQSTG 66  
                  77888763357899********************************************998776 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   2.9e-14   1.1e-11     628     683 ..       7      63 ..       2      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 2.9e-14
   TIGR03797 628 sesleklkvtRiv.iAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelar 683
                   sle lk t ++ +AHRL Ti++ d ilv+e+Gr  e Gs  +Ll  +G+f++l++
  MMETSP1174-20130828|6548_1   7 LRSLESLKHTTVIsVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQ 63 
                 57999**9877654*****************************************97 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   9.9e-11   3.7e-08     509     565 ..       3      61 ..       1      67 [. 0.81

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 9.9e-11
   TIGR02203 509 vqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasL 565
                 +q  L  l   k  t + +ahRL ti + D i+v+++G+  e G+  +Ll+ +G++  L
  MMETSP1174-20130828|6548_1   3 IQSMLRSLEslKHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDL 61 
                 5666655541144566679***********************************98776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.6e-10   9.5e-08     640     691 ..      13      64 ..       2      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.6e-10
   TIGR01846 640 ckgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqq 691
                  k  tvi++ahrl+t+ + d ilv+e G+  e G+  +ll  +g + +l q 
  MMETSP1174-20130828|6548_1  13 LKHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQS 64 
                 4678******************************************999775 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   3.9e-10   1.5e-07     662     710 .]      15      63 ..       3      63 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 3.9e-10
   TIGR03796 662 gctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710
                   t+i vaHRL ti d d i+v+e G+  e G+  +ll+ +g + +L++
  MMETSP1174-20130828|6548_1  15 HTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQ 63 
                 468899*************************************999985 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.1e-09   4.3e-07     650     707 ..       6      63 ..       2      64 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.1e-09
   TIGR01193 650 ivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                 ++  l +lk+ t+i vahrl+     d i+v++ G+  e Gs  +ll+ +G +++l++
  MMETSP1174-20130828|6548_1   6 MLRSLESLKHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQ 63 
                 6778889**********************************************99986 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.8e-09   6.7e-07     520     571 ..      15      66 ..       4      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.8e-09
   TIGR01192 520 nrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasg 571
                 + t + +ahrl t+ + dl+l ++ gr  e gs  +l + +g f+ l++++g
  MMETSP1174-20130828|6548_1  15 HTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLVQSTG 66 
                 4455569*****************************************9988 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-09   7.6e-07     652     711 .]       3      62 ..       1      62 [. 0.95

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.1e-09
   TIGR00958 652 veqllqesksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                 ++ +l + +s k  tv+++ahrL+t+   d ilv++ g+  e G   qL + +++++ lv
  MMETSP1174-20130828|6548_1   3 IQSMLRSLESLKHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLV 62 
                 78899999**********************************************999987 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.8e-09     1e-06     516     572 ..       4      62 ..       1      64 [. 0.78

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.8e-09
   TIGR02204 516 qqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarla 572
                 q  l +l +  + t + +ahrL t+++ d i+v++ Gr  e G+  +L+   g++  l+
  MMETSP1174-20130828|6548_1   4 QSMLRSLESlkHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQLLDGKGIFYDLV 62 
                 555555543104455558******************************99999887776 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.9e-06    0.0015     499     540 ..      12      51 ..       3      54 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.9e-06
   TIGR01842 499 elkarkitvvvithrpsllelvdkilvlkdGalkafGereev 540
                 +l  +++tv+ ++hr + +   d ilv+++G+  +fG+  ++
  MMETSP1174-20130828|6548_1  12 SL--KHTTVISVAHRLETIMDFDLILVMEAGRAGEFGSPPQL 51 
                 44..5679999**************************87665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012     0.045     169     220 ..       3      53 ..       1      70 [. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   TIGR00968 169 lrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                 +++ lr l    + t + v+h  e  ++  d i v+e G+  + gs+ ++ d
  MMETSP1174-20130828|6548_1   3 IQSMLRSLESLKHTTVISVAHRLETIMDF-DLILVMEAGRAGEFGSPPQLLD 53 
                 67899999887777778899999999986.99***************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 468.56
//
Query:       MMETSP1174-20130828|6550_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|6549_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 928.32
//
Query:       MMETSP1174-20130828|6554_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1155.80
//
Query:       MMETSP1174-20130828|6557_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|6558_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 181.93
//
Query:       MMETSP1174-20130828|6564_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|6562_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1090.65
//
Query:       MMETSP1174-20130828|6561_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 760.08
//
Query:       MMETSP1174-20130828|6574_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|6577_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1482.94
//
Query:       MMETSP1174-20130828|6579_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.5   0.0     0.0099   13.0   0.0    1.2  1  TIGR00088 trmD: tRNA (guanine-N1)-methyltransferase
  ------ inclusion threshold ------
      0.026   10.4   0.0      0.034   10.0   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00088  trmD: tRNA (guanine-N1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.8e-06    0.0099      29      66 ..      85     124 ..      68     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.8e-06
   TIGR00088  29 nlvelevvnlRdfskdkhktvD..depyGGGaGmvlkaep 66 
                 + ++l v+  R++++ +h++    ++  GGG Gmv ++e 
  MMETSP1174-20130828|6579_1  85 DAADLAVLRGRQYCQHQHQQQQeqEQQQGGGGGMVPEPES 124
                 567889999*********9875115689******977765 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.7e-05     0.034     127     163 ..      46      83 ..      36     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.7e-05
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasve.arakg 163
                   + g tal+ A+ + ++e+ +lLl++g++   + a+g
  MMETSP1174-20130828|6579_1  46 HHSDGTTALMSAAWCADVELTHLLLNRGVRPDlVDANG 83 
                 56789***********************9866655655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1120.12
//
Query:       MMETSP1174-20130828|6578_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   13.0   0.0      0.015   12.1   0.0    1.4  2  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.6e-06     0.015     263     319 ..      45     104 ..      41     121 .. 0.80
   2 ?   -3.8   0.0      0.24   9.8e+02     226     242 ..     240     256 ..     237     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.6e-06
   TIGR02037 263 vaevlkgspAekaGlkaGDvilk...vngkkiksaadlreaigtlkpgkkvklkilRkgk 319
                 ++ev++gsp +++Gl++GD i+    +ng +     +  +a+ ++k+g++v  +++R ++
  MMETSP1174-20130828|6578_1  45 IQEVQRGSPGHRGGLQKGDRIICfayINGSNQGANLSGLNAVLHAKAGQRVATRLFRPNR 104
                 889****************88751226888877777778999999999999999999765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.24
   TIGR02037 226 qllkkgkvkrglLGvki 242
                 q+++++ v+r +LGv+ 
  MMETSP1174-20130828|6578_1 240 QFIHNEVVRREVLGVTS 256
                 78889999******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1328.99
//
Query:       MMETSP1174-20130828|6587_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|6582_1  [L=1037]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.50
# Mc/sec: 2737.45
//
Query:       MMETSP1174-20130828|6585_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.1   0.0     0.0039   14.4   0.0    1.5  1  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.6e-07    0.0039     132     165 ..     100     133 ..      88     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9.6e-07
   TIGR01762 132 geitvwtaftdatrenGclkvipGthnslnydet 165
                    tvw+a+tdat +  cl vip t +  +y e 
  MMETSP1174-20130828|6585_1 100 KYCTVWIALTDATPASSCLYVIPKTLDPGYYLEG 133
                 4579*********************999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1271.49
//
Query:       MMETSP1174-20130828|6588_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|6586_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   18.2   0.1     0.0014   16.7   0.1    1.8  1  TIGR02181 GRX_bact: glutaredoxin 3


Domain annotation for each model (and alignments):
>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.5e-07    0.0014      18      80 .]     323     394 ..     318     394 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.5e-07
   TIGR02181  18 lLeekgvefeeievdkdkeareemierskgrrtvPQi..figd........vhvGGcddLlaleregkLdkLL 80 
                 lL++k  ++e i vd  + +r+ m++ s+    +PQ+  f+++        +++G +ddL+ le++g Ld+ L
  MMETSP1174-20130828|6586_1 323 LLKAKAKKYEMIYVDVTPGRRDAMFSVSE-SYDLPQVhvFVEEeeeedseyQNLGSIDDLQILEDDGMLDQYL 394
                 89**************************5.9*****733665522233333579***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1182.51
//
Query:       MMETSP1174-20130828|6592_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|6594_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-54  183.0   0.0    1.4e-54  182.8   0.0    1.0  1  TIGR01351 adk: adenylate kinases
    1.8e-25   87.6   0.0    8.4e-18   62.5   0.0    2.0  2  TIGR01360 aden_kin_iso1: adenylate kinase
    3.6e-25   86.8   0.0      8e-18   62.8   0.0    2.0  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.0   9.9e-58   1.4e-54      19     201 ..       2     177 ..       1     187 [. 0.93

  Alignments for each domain:
  == domain 1    score: 182.8 bits;  conditional E-value: 9.9e-58
   TIGR01351  19 laeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv.ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkie 201
                 + ++++++h+stGd+lR++ +++t +gk+a++y+ +G+lvpd+++++lv  ++e+  +++k+++LDGfPRt+ Qa  L++ l     ++d+v++l+vp +++veris+R+i+p++g+vy  ++++pk+   dd+t+e l+qR+DD++e+v++Rle+Y++ t pli++Y++ g+l ++++++  +
  MMETSP1174-20130828|6594_1   2 ILKEFSFQHLSTGDVLRQHTRNQTDIGKEAATYMARGHLVPDDLIVRLVLLEVER--SNSKNLLLDGFPRTVPQATELSQHL-----SVDMVLNLNVPVDTIVERISNRWIHPASGRVYAYDYNPPKElGLDDATQEPLVQRDDDKAEAVRTRLETYEALTTPLIQFYEELGILKTFSGNQ-SD 177
                 7899**********************************************99977..56889*****************876.....59****************************************99*********************************************97765.34 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   6.1e-21   8.4e-18      22     127 ..       1     103 [.       1     116 [. 0.90
   2 !   23.2   0.0     7e-09   9.6e-06     132     171 ..     135     174 ..     127     188 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 6.1e-21
   TIGR01360  22 kivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkr 127
                 ki++ + f hls+Gd+lr+    +++ gk+    m++G+lvp d ++ l+      +  +sk +l+dG+pr v q +e+ ++++  ++vl l+v  dt+v+r+ +r
  MMETSP1174-20130828|6594_1   1 KILKEFSFQHLSTGDVLRQHTRNQTDIGKEAATYMARGHLVPDDLIVRLVLLE--VERSNSKNLLLDGFPRTVPQATELSQHLS-VDMVLNLNVPVDTIVERISNR 103
                 8999******************************************9998644..455679******************99986.79****************988 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 7e-09
   TIGR01360 132 arvddnektikkrletykkatepvieyyeskgkllkinae 171
                  r+dd++++++ rlety   t+p+i++ye  g+l++   +
  MMETSP1174-20130828|6594_1 135 QRDDDKAEAVRTRLETYEALTTPLIQFYEELGILKTFSGN 174
                 599***************************9999887644 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   5.9e-21     8e-18      18     133 ..       1     112 [.       1     118 [. 0.90
   2 !   22.2   0.0   1.7e-08   2.4e-05     132     182 ..     136     185 ..     128     188 .. 0.88

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 5.9e-21
   TIGR01359  18 kiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrgqs..sGrv 133
                 ki +ef+f hls+Gd+lr+ ++ +  + g+  ++++  G++vP ++ v+l+  +++ s+ sk++l+dGfPr         +    ++ v++vl l+++ +++v+r+ +r     sGrv
  MMETSP1174-20130828|6594_1   1 KILKEFSFQHLSTGDVLRQHTR-NQTDIGKEAATYMARGHLVPDDLIVRLVLLEVERSN-SKNLLLDGFPRTVPQATELSQ----HLSVDMVLNLNVPVDTIVERISNRWIHpaSGRV 112
                 699****************987.88999***************************9998.999*********988877664....56699*******************643338886 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.7e-08
   TIGR01359 132 rvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevek 182
                 r dd  e+++ rlety+  t+p+i+++e+ + +k+ ++++s + ++  v++
  MMETSP1174-20130828|6594_1 136 RDDDKAEAVRTRLETYEALTTPLIQFYEELGILKTFSGNQS-DVIYPMVKD 185
                 99*******************************99998875.777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 878.41
//
Query:       MMETSP1174-20130828|6601_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         4  (0.000975134); expected 82.0 (0.02)
Passed bias filter:                        4  (0.000975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|6602_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|6603_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048    9.6   0.4      0.048    9.6   0.3    1.0  1  TIGR01666 YCCS: hypothetical membrane protein, TIGR01666
      0.069   11.0   3.4      0.081   10.7   2.3    1.2  1  TIGR02209 ftsL_broad: cell division protein FtsL
      0.075    8.5   9.2      0.076    8.4   6.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR01666  YCCS: hypothetical membrane protein, TIGR01666
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   3.5e-05     0.048     294     338 ..       5      49 ..       2      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.5e-05
   TIGR01666 294 dkrveralleldaslellraerrddkdllkdlgfllnnlraiekq 338
                 +k v+r  +e ++ + +lr++  +++ +l+ l+  ++nlr+++ +
  MMETSP1174-20130828|6603_1   5 EKTVQRRAEEAEKQVAKLREDDEKKQHELNVLQNEIKNLRSVNSK 49 
                 67788888999999****************************975 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.3   5.9e-05     0.081      22      58 ..       8      44 ..       6      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.9e-05
   TIGR02209 22 vqhqtrqlnselqklqaeieklqkewndLqlEvaels 58
                vq ++ ++ ++++kl +  ek+q+e n Lq E++ l 
  MMETSP1174-20130828|6603_1  8 VQRRAEEAEKQVAKLREDDEKKQHELNVLQNEIKNLR 44
                6777889999***********************9986 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   6.4   5.5e-05     0.076     364     421 ..       2      59 ..       1      61 [] 0.69

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 5.5e-05
   TIGR02169 364 keeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrlee 421
                 +e+++++++++ee +k+ a+lre  ++++++l+ l++e+++l+  ++++ e+  +le+
  MMETSP1174-20130828|6603_1   2 REVEKTVQRRAEEAEKQVAKLREDDEKKQHELNVLQNEIKNLRSVNSKKGEKIMKLEK 59 
                 4566677777777777777777777777777777777777777777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                      348  (0.0848367); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 259.72
//
Query:       MMETSP1174-20130828|6609_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|6604_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1633.93
//
Query:       MMETSP1174-20130828|6611_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1174-20130828|6614_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 469.73
//
Query:       MMETSP1174-20130828|6615_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-14   49.7   0.0    3.4e-13   47.4   0.0    1.9  2  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.04   1.6e+02     208     232 ..      25      49 ..      17      73 .. 0.70
   2 !   47.4   0.0   8.3e-17   3.4e-13     111     172 ..     158     219 ..     154     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.04
   TIGR01388 208 kelavlkalaaWRereAreRdkprn 232
                 ++l+ +   a+WR r    Rdk r 
  MMETSP1174-20130828|6615_1  25 ENLYAVGVDAEWRPRPRNSRDKNRP 49 
                 5666666777888777777776654 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 8.3e-17
   TIGR01388 111 svgydklVkevleveldKsesrtDWlaRPLtdkqleYAaaDVtyLlelyekLserleeegrl 172
                 + g ++lV e+ + +ldK e+ +DW +RPLt+ q++YAa D + L++++e+++  l ++++ 
  MMETSP1174-20130828|6615_1 158 GGGLSRLVLEMCGKRLDKREQTSDWERRPLTESQCRYAALDARCLISVMEEMNRCLPRSSWP 219
                 557899**********************************************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1174-20130828|6613_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1791.28
//
Query:       MMETSP1174-20130828|6620_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 992.79
//
Query:       MMETSP1174-20130828|6616_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.5   0.0        0.2    9.1   0.0    2.6  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0013       5.1      13      75 ..     189     265 ..     179     273 .. 0.75
   2 !    9.1   0.0   4.8e-05       0.2     123     197 ..     303     379 ..     291     388 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0013
   TIGR01262  13 RvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkide.................gevltqSlAiieyLee 75 
                  +R+aL+L g++y  v   + + G+ +++   + N  +  PtL  d                  g+++tqS Ai+ ++ +
  MMETSP1174-20130828|6616_1 189 PIRLALELAGVSYDDV--RISA-GDPSDPSSYKSNWLGPKPTLGADAggplgfpnlpylidsdnGICMTQSNAILRHIGR 265
                 5789999999988765..4455.677888888888888888887777677777777777777778999999999887665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 4.8e-05
   TIGR01262 123 deeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvynAerfe..v..dlaqyPtlkrieealaelp 197
                 d ++k++++++ ++  la +E+ll +   af+vG++v+++d+ L  ++     +e  +  + +++P+l++ ++++a+lp
  MMETSP1174-20130828|6616_1 303 DYANKDSFVADTMRPNLARFEALLGD--EAFFVGKAVSIVDLKLYEILDKCAIVEpgClgEESAFPRLSAFHARVAALP 379
                 5678999*****************98..68**************98886654332112224456666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1834.19
//
Query:       MMETSP1174-20130828|6621_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|6618_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1587.54
//
Query:       MMETSP1174-20130828|6626_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|6624_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 569.20
//
Query:       MMETSP1174-20130828|6632_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 975.78
//
Query:       MMETSP1174-20130828|6629_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 974.69
//
Query:       MMETSP1174-20130828|6633_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1174-20130828|6635_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1174-20130828|6634_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 872.93
//
Query:       MMETSP1174-20130828|6636_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|6637_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   37.9   0.0    3.2e-06   24.8   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.029   12.2   0.0       0.03   12.2   0.0    1.1  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.6e-09   3.2e-06       2      35 .]       3      36 ..       2      36 .. 0.96
   2 !   11.6   0.0   2.5e-05     0.051       2      24 ..      38      60 ..      37      61 .] 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.6e-09
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                ++ ++++++ ++g+++ + +lf+++k++g++Pd+
  MMETSP1174-20130828|6637_1  3 SFHMVMRACKQSGQTSAVYDLFEDLKRQGLSPDI 36
                689*****************************95 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.5e-05
   TIGR00756  2 tyntlisglckagrveeAlelfd 24
                ty   i++++++g+v  A +++d
  MMETSP1174-20130828|6637_1 38 TYHYTIDACVREGDVTRASQVLD 60
                777779*************9987 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.03       5      33 ..       9      37 ..       6      55 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
   TIGR00176  5 vgykdsGKTtlieklvkelkargyrVati 33
                 ++k+sG T+++  l + lk +g+++ + 
  MMETSP1174-20130828|6637_1  9 RACKQSGQTSAVYDLFEDLKRQGLSPDIM 37
                589*********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 223.65
//
Query:       MMETSP1174-20130828|6639_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 710.41
//
Query:       MMETSP1174-20130828|6641_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 706.39
//
Query:       MMETSP1174-20130828|6642_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 796.65
//
Query:       MMETSP1174-20130828|6643_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|6649_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 524.66
//
Query:       MMETSP1174-20130828|6651_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   27.9  16.7    0.00082   17.0   0.1    4.3  4  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   1.7   3.6e-05      0.15       9      21 ..      17      28 ..      12      29 .. 0.91
   2 !   17.0   0.1     2e-07   0.00082       7      22 ..      40      55 ..      39      58 .. 0.92
   3 !    8.4   0.0   0.00011      0.45       7      21 ..      66      80 ..      65      85 .. 0.88
   4 ?    0.2   0.4     0.042   1.7e+02       6      17 ..      91     102 ..      88     106 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.6e-05
   TIGR01376  9 nNsakgsGGAIya 21
                +Nsa  sGG+Iya
  MMETSP1174-20130828|6651_1 17 SNSAS-SGGGIYA 28
                79999.******8 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2e-07
   TIGR01376  7 FsnNsakgsGGAIyat 22
                F++Nsa + GG+Iy+ 
  MMETSP1174-20130828|6651_1 40 FTSNSAIELGGGIYTH 55
                **************85 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00011
   TIGR01376  7 FsnNsakgsGGAIya 21
                F++Ns  ++GG+  a
  MMETSP1174-20130828|6651_1 66 FESNSVSERGGGVLA 80
                ***********9877 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.042
   TIGR01376   6 lFsnNsakgsGG 17 
                 +F+ N+a+ +G 
  MMETSP1174-20130828|6651_1  91 SFTMNYAGLYGA 102
                 688888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 474.34
//
Query:       MMETSP1174-20130828|6652_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1220.90
//
Query:       MMETSP1174-20130828|6656_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1162.52
//
Query:       MMETSP1174-20130828|6659_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 814.69
//
Query:       MMETSP1174-20130828|6662_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 304.83
//
Query:       MMETSP1174-20130828|6658_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.0   0.1      0.033   10.5   0.1    1.1  1  TIGR03811 tyr_de_CO2_Ent: tyrosine decarboxylase
      0.078    9.3   0.0       0.12    8.7   0.0    1.2  1  TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase


Domain annotation for each model (and alignments):
>> TIGR03811  tyr_de_CO2_Ent: tyrosine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.6e-05     0.033      21     123 ..      34     134 ..      21     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.6e-05
   TIGR03811  21 dllvklvdehlgwrknylpqdkpliseeektskefkktvnkmkevldelssrlrtesvp.whsagrywghmnsetlmpallaynyamlwngnnvayesspatsq 123
                 d+ +k+  e +  r n l  d+ +i++e ++    ++ +  +  +++e+ +++r         +g+   + n e  + a    n aml+  +n +y ss + s+
  MMETSP1174-20130828|6658_1  34 DVAKKI-IERVDERLNCLETDMRVINAETEKQSRVQANITSILGIMEEIDEQFRVAERCeKVISGKV--KSNVEDYLQATYRINEAMLYMTKNETYMSSASMSR 134
                 554454.478999***************9999999******************97654404445554..568899************************99885 PP

>> TIGR01104  V_PPase: V-type H(+)-translocating pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   6.1e-05      0.12     482     551 ..     363     430 ..     357     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 6.1e-05
   TIGR01104 482 gsaalvalalfaafveeaaikkvdvlspkvliGllvGallpylfssltlkavGraalklveevrrqfrti 551
                 g a++v+l lf+   ++ + k    lsp  + G ++   l ++  s+  + vGra + ++e vr   +t+
  MMETSP1174-20130828|6658_1 363 GEASIVCLDLFMGIEKSYS-KLEAALSPLNMTGTIMTKDLSFIR-SMMCDGVGRALVTMIESVRENKKTV 430
                 6688899999987644433.3344589*************9875.67789**************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 1843.05
//
Query:       MMETSP1174-20130828|6663_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1611.87
//
Query:       MMETSP1174-20130828|6669_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.3   0.2     0.0045   14.6   0.1    1.3  1  TIGR03915 SAM_7_link_chp: probable DNA metabolism protein
  ------ inclusion threshold ------
        4.3    4.0  10.3        4.8    3.8   0.2    3.1  3  TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family


Domain annotation for each model (and alignments):
>> TIGR03915  SAM_7_link_chp: probable DNA metabolism protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.2e-06    0.0045      65     122 ..     301     358 ..     291     366 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.2e-06
   TIGR03915  65 skealkqlyraflsedeereallyrllrrlfkegkkvledladpdvlrveelakkvsr 122
                 ++++ ++lyraf+s+  ++ ++l+  +  l +e++++l   ++++v +++++ak+v+ 
  MMETSP1174-20130828|6669_1 301 DSSVREELYRAFVSRAGKENEVLIPQILALKREQANLLGYDTHAEVSNAQKMAKSVQA 358
                 3678899********66666666666666666667*********************84 PP

>> TIGR02290  M3_fam_3: oligoendopeptidase, pepF/M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2    0.0025       5.2      14     119 ..      79     179 ..      68     269 .. 0.80
   2 ?    1.6   0.3     0.011        22     194     310 ..     295     415 ..     289     418 .. 0.61
   3 ?    3.8   0.2    0.0023       4.8     373     392 ..     529     548 ..     521     555 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0025
   TIGR02290  14 eeieedlekikaevdelekklkekledldakekeklekalkklealsellskvrayaslllsadtedeeakkllselealsselqqallffelelaklsdeeiael 119
                 + +++ l+k+++e   le++l+ +    d+ + e + + l+k+ea  e ++ v   +  +  +d   e + ++++++ +  s+++q l  ++ + +++ d+e ++l
  MMETSP1174-20130828|6669_1  79 PAVQSILQKLETEFTGLEEQLEGN----DSVKYEDVVEQLEKVEAPLEYAWGVVGHLMGVSNSDELREVHGAMQADVIKTTSRISQSLPIYK-AVESVRDKEGEKL 179
                 445555666666666666666554....334456678888888888899999999999999999999999**************99988776.4566777766655 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.011
   TIGR02290 194 nllrdpdaevRkkafkallkalekeeevlaailnalkger......leelrlRkyedpleerllenrieeetldallevvkenlplfrrylklkAkllGk..eklkfyDllAplskksakkysfd 310
                 ++ + +d +vR++ ++a+  +  ke+evl   + alk e+      +++ ++ + ++++++  + +++++  lda   +++++l+    y     ++ G   ++lk +D+     ++s++ + f+
  MMETSP1174-20130828|6669_1 295 AMKHIRDSSVREELYRAFVSRAGKENEVLIPQILALKREQanllgyDTHAEVSNAQKMAKSVQAIDDMHAMLLDAAKPAAEAELEQLTAYA----QANGFegAALKLWDITFWSERQSEELFEFE 415
                 6778899**********99988888888766655666665121111233334445556666666666666666666666666666665554....444430056888887766666666666665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0023
   TIGR02290 373 lsdvaTLAHELGHavHsell 392
                 +s+v TL HE GH++  +l 
  MMETSP1174-20130828|6669_1 529 FSEVTTLFHETGHGLQHMLT 548
                 799***********977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.70
# Mc/sec: 1417.94
//
Query:       MMETSP1174-20130828|6672_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1174-20130828|6671_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-76  253.9  22.6    8.3e-76  253.4  15.6    1.1  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    1.5e-16   58.3   6.0    2.2e-16   57.8   4.2    1.2  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    5.8e-10   36.5  15.8    5.8e-10   36.5  11.0    1.8  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    8.6e-10   35.8   2.6    8.6e-10   35.8   1.8    1.7  2  TIGR00898 2A0119: cation transport protein
    2.8e-06   23.9   2.8    2.8e-06   23.9   1.9    2.3  3  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4  15.6     1e-78   8.3e-76       4     399 ..      28     433 ..      25     434 .. 0.87

  Alignments for each domain:
  == domain 1    score: 253.4 bits;  conditional E-value: 1e-78
   TIGR00883   4 vewfDfllYafaAvlvfeefFfp.ssdplvallatlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekekkkkearkkriplaev.ltkkrkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvl.........i.lltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfp.tevRytgvslaynlasviggglapviaaaLvaltgdkaavgiyllllalis 399
                  +++Df +Y+ +A +++ +fF++  ++   all ++at++++F++Rp+Ga+ fG++gD +G++++L+ + llM+i+++ +g lP+y+++G+ A++lL+llr++QG+++Gg ++ga ++++E+Ap ++r++ygs+ ++++s+g   +++vv+ll+  ls++++ +WgWRiPF+++ +   +gL++ + +   p+++ + + k +++++    l+++ + ++r  l +++g+ ++t+ + Y +++++ sYl + ++  +s ++a+l+++++l+l +l++p++g+l+d+i   k l         i +  ++a ++ ++++ ++   + ++++++++ + ++i+a+  + +aa+ +e  +   + ytgv+l+ ++a  ++ggl p++a+ +       +a+ +y+  l+ is
  MMETSP1174-20130828|6671_1  28 YDMYDFTVYGYCAPYIATNFFPQgGGNINLALLESFATYSAAFFMRPVGAAYFGYVGDMHGKRRALIQSTLLMAIPSFFMGFLPTYKQVGTPATLLLVLLRMMQGIAVGGQLSGAYIIMVETAPVNRRAYYGSMITAANSIGSTCGSAVVTLLTLPLSQSQMNSWGWRIPFILGSLFGPFGLIVLRLVPNQPTITSHCSTKIAKNNNVLERLRSIvWGSERSRLYIMTGCLAGTAGAAY-FKVWMLSYLATLTT-IMSYHKASLISTCTLALEILLFPCFGWLADKIAEEKGLepfqmharfIeFSALSAGAFSLLMFWWMGRDRRFYVIAIAQTAWSVIIAIGSSCVAAFEVEFWSgSGYTYTGVALGHSIAYTLFGGLVPTVATFMYDFWS-PFAPFVYISTLTAIS 433
                 689*******************966788999*******************************************************************************************************************************************************998888888887777666655555444556555155666677777787777777777.69*********987.99******************************87654411111111121233456677888999999999*****************************99626699************************9999887.777777776666555 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   4.2   2.7e-19   2.2e-16      53     263 ..      66     292 ..      15     300 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 2.7e-19
   TIGR00891  53 lsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyek........llivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvv......vnvlgdsWriLfflsilpiilalflrkrvpe....aevwkeklkakklvktrvdkvlggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdllPt 263
                  saa+++r+vGa  +G ++D  g+r +l+ s  l ++ ++  +f pty++        l+ +r++ Gi++gG+   a  + +e +P+++r+    ++  + ++G    + v +++       ++   +Wri f l+ l   + l++ ++vp+    + +   k ++++ v+ r++ +  g ++ +  ++t   a   +++  +    +L  l + +  +s+    l+ t
  MMETSP1174-20130828|6671_1  66 YSAAFFMRPVGAAYFGYVGDMHGKRRALIQSTLLMAIPSFFMGFLPTYKQvgtpatllLVLLRMMQGIAVGGQLSGAYIIMVETAPVNRRAYYGSMITAANSIGSTCGSAVVTLLtlplsqSQMNSWGWRIPFILGSLFGPFGLIVLRLVPNqptiTSHCSTKIAKNNNVLERLRSIVWGSERSRLYIMTGCLA--GTAGAAYFKVWMLSYLATLTTIMSYHKASLIST 292
                 689*********************************************85344444436889*************999**************************988776665542222221233446*******98877777766666766222234455667778899999999999999999777776554..566666666777777777777777777766665 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  11.0   7.1e-13   5.8e-10       7     333 ..       7     371 ..       1     383 [. 0.70
   2 ?   -2.2   0.1       0.4   3.3e+02     144     168 ..     385     409 ..     373     414 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 7.1e-13
   TIGR00895   7 ekqklsryqirvlilsflivlvdGldllvlgfaapalskew........gldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtq........LlvlRflaglGlGgllpnliaLvsEyapkrfratvvglva....vGyaiGaavggllaall....ipafgWrslflvggiiplllllllikv..LpEsikflvek..kpekvrkilnaiapslqaeaqs......elaeekseekkkrsvvkllfkgkla.katllLwllyflllvvvYlltsWlP.kLlveagaslskaa..lllvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvs 333
                 +++k +   + v++ +  ++l d +d  v+g+ ap ++ ++        +l   e     sa+ +   +Ga  fg++ D  g++r+l+ s+ll+++ +  +++  +++q        L++lR++ g+ +Gg l  +  +++E ap  +ra   ++++    +G + G av +ll+  l    +  +gWr+ f++g+++  + l++l+ v   p   ++   k  k+++v+++l +i+   +++         + +   +  k++  +  + ++  ++ ++  l+  ++ +l + ++    Wl  k+  e+g +  ++   ++ ++   +g+++ l++ ++    +  v+a+   + +v++ + +s
  MMETSP1174-20130828|6671_1   7 RNEKRTVPLWHVVLAAGGASLYDMYDFTVYGYCAPYIATNFfpqgggniNLALLESFATYSAAFFMRPVGAAYFGYVGDMHGKRRALIQSTLLMAIPSFFMGFLPTYKQvgtpatllLVLLRMMQGIAVGGQLSGAYIIMVETAPVNRRAYYGSMITaansIGSTCGSAVVTLLTLPLsqsqMNSWGWRIPFILGSLFGPFGLIVLRLVpnQPTITSHCSTKiaKNNNVLERLRSIVWGSERSRLYimtgclAGTAGAAYFKVWMLSYLATLTTIMSyHKASLISTCTLALEILLFPCFGWLAdKIAEEKGLEPFQMHarFIEFSALSAGAFSLLMFWWMGRDRRFYVIAIAQTAWSVIIAIGSS 371
                 4555666679999999999*******************9986665553344444555567788888889*************************999888888777766555555557899****************************9877777611114555555555555544433335789*********99876655554443014444566666678899999999999887766665555554322222233344444444444444441444555666778888889999999889999999887665511455555668888888888877666666666666666666666554 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.4
   TIGR00895 144 glvavGyaiGaavggllaallipaf 168
                 g+ + G+a+G +++ +l + l+p+ 
  MMETSP1174-20130828|6671_1 385 GYTYTGVALGHSIAYTLFGGLVPTV 409
                 6788999999999999999999975 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   1.8     1e-12   8.6e-10     141     228 ..      75     170 ..      24     199 .. 0.87
   2 ?   -2.7   0.1      0.49     4e+02     203     226 ..     341     364 ..     334     378 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1e-12
   TIGR00898 141 lGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnyt........vflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGl 228
                 +G++ +G++ D  G +++L+ stl +a+ ++ + f p+y          +++lr+++G++ +g    a+++++E  p++ Ra+ g +i+ + ++G 
  MMETSP1174-20130828|6671_1  75 VGAAYFGYVGDMHGKRRALIQSTLLMAIPSFFMGFLPTYKqvgtpatlLLVLLRMMQGIAVGGQLSGAYIIMVETAPVNRRAYYGSMITAANSIGS 170
                 8********************************99999853333333267899************************************9999996 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.49
   TIGR00898 203 LitEflpkkaRaivgilievffal 226
                 L+  ++++  R +v+ + ++++++
  MMETSP1174-20130828|6671_1 341 LMFWWMGRDRRFYVIAIAQTAWSV 364
                 666789999999999999999986 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   1.9   3.5e-09   2.8e-06      82     210 ..      66     207 ..      62     238 .. 0.74
   2 ?   -1.3   0.2      0.16   1.3e+02     196     215 ..     347     366 ..     260     370 .. 0.79
   3 ?   -1.8   0.1      0.23   1.9e+02     278     309 ..     420     452 ..     385     457 .. 0.57

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.5e-09
   TIGR00894  82 lssvfygslilqipvGylakkygtkkvigaallls...svlslliPiaaavgv..al.vivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlG....tlivlpisGlicesd...lgWpavfYifgivgtv 210
                 +s+ f+   +    +Gy+ +  g ++ +  + ll    s++  ++P+  +vg+  +l +++lR++qG+a g   ++ + +++  +P + R+   s++++  ++G     ++v +++  + +s+    gW + f + ++ g  
  MMETSP1174-20130828|6671_1  66 YSAAFFMRPVGAAYFGYVGDMHGKRRALIQSTLLMaipSFFMGFLPTYKQVGTpaTLlLVLLRMMQGIAVGGQLSGAYIIMVETAPVNRRAYYGSMITAANSIGstcgSAVVTLLTLPLSQSQmnsWGWRIPFILGSLFGPF 207
                 777788888888889*********999988865551115666679*9999985324448999*****************************999999885555422225555555555555555446888777766666654 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.16
   TIGR00894 196 gWpavfYifgivgtvvlilw 215
                 g +  fY+++i  t+++++ 
  MMETSP1174-20130828|6671_1 347 GRDRRFYVIAIAQTAWSVII 366
                 44455888888888888775 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.23
   TIGR00894 278 eilltylPtf..iksvlhlnirenGllSsLPyll 309
                 +   +y+ t+  i+ + h+ +r   l+SsLP+  
  MMETSP1174-20130828|6671_1 420 FAPFVYISTLtaISLTAHV-VRRKDLVSSLPFSE 452
                 3333333333113333333.56667788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1673.05
//
Query:       MMETSP1174-20130828|6673_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1080.47
//
Query:       MMETSP1174-20130828|6674_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 2073.51
//
Query:       MMETSP1174-20130828|6681_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|6680_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   17.3  37.9    0.00018   17.2  26.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.002   13.7  35.4     0.0023   13.5  24.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
          1    5.6  32.3        1.3    5.3  22.4    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        4.2    3.8  19.4        5.2    3.5  13.4    1.2  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  26.3   1.7e-07   0.00018     683     815 ..      24     156 ..       3     161 .] 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.7e-07
   TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt 815
                  l e+ ++  +k++e +k+  e++k+l +le+  e+++k l e e + +e +k ++++e+++ + ee laq+e++l+e+e++ +e++++++e+e++l+e+e++ +e ea+ ++ +++l++ +++++e ea++ 
  MMETSP1174-20130828|6680_1  24 ALAEQHKNHGAKTEEEKKKEIEMKKQLADLETLHEEKEKGLAEYEAQYQENEKAFAEHEAKIAEFEEALAQNEEALAEYEAKNAEYKAKIAENEKALAEHEAKHAEHEAKHAENEKALAEHEAKHAEHEAKHL 156
                 3555666666777777777777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887777776654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  24.6   2.2e-06    0.0023     686     821 ..      24     159 ..       3     161 .] 0.53

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-06
   TIGR02169 686 eLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieae 821
                 +L ++ ++  ++ ++ +k+  e++++l d e  +ee+ek l + e++ +++++  +e e+k+ e ee+l++++e l+e+ea+ +e+++k+a+ ++al++ ea+ +e++ ++ e+e+   e+e ++ e+ ++++e+e
  MMETSP1174-20130828|6680_1  24 ALAEQHKNHGAKTEEEKKKEIEMKKQLADLETLHEEKEKGLAEYEAQYQENEKAFAEHEAKIAEFEEALAQNEEALAEYEAKNAEYKAKIAENEKALAEHEAKHAEHEAKHAENEKALAEHEAKHAEHEAKHLENE 159
                 3333333334444444444445555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555543 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  22.4    0.0012       1.3      24     151 ..      23     148 ..       9     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0012
   TIGR03319  24 ekkleeaeeeakkiieeakkeaeakkkeallea.keevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAke 151
                 ++  e+ +++  k  ee+kke e kk+ a le+ +ee +k  +e e++ +e++k ++++e ++++ ee+l++++e+l + e +  + +++++e+ek l e+e++  e+++++ e+ +   +l+++eAk+
  MMETSP1174-20130828|6680_1  23 KALAEQHKNHGAKTEEEKKKEIEMKKQLADLETlHEEKEKGLAEYEAQYQENEKAFAEHEAKIAEFEEALAQNEEALAEYEAKNAEYKAKIAENEKALAEHEAKHAEHEAKHAENEK---ALAEHEAKH 148
                 4446778888889999999999999999988863677778889999***********************************99999999******9999988877666555444333...333333332 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  13.4     0.005       5.2      67     186 ..      30     145 ..       6     157 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.005
   TIGR02231  67 eadseriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtle 186
                 + +  + +e +kk  e+   +++l+d  +  +++ k l++ + + +e+ k   ++ea+++e++++l+ +e++++++++++ e +aki+e ek l+e e++  +    k ++++k+l++ e
  MMETSP1174-20130828|6680_1  30 KNHGAKTEEEKKKEIEM---KKQLADLETLHEEKEKGLAEYEAQYQENEKAFAEHEAKIAEFEEALAQNEEALAEYEAKNAEYKAKIAENEKALAEHEAKHAEHEA-KHAENEKALAEHE 145
                 33333333333333333...3344444455566669999999999999888999****************************************998866554444.5555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       662  (0.161385); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.48
# Mc/sec: 442.71
//
Query:       MMETSP1174-20130828|6678_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   23.5   0.1       0.29    7.2   0.0    4.0  3  TIGR03196 pucD: xanthine dehydrogenase D subunit
     0.0009   16.9   1.1        8.4    3.9   0.0    4.1  4  TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
     0.0063   13.6   0.2      0.018   12.1   0.0    1.8  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
  ------ inclusion threshold ------
       0.35    8.0   5.0      0.064   10.4   0.5    1.9  2  TIGR02739 TraF: type-F conjugative transfer system pilin assembly protein TraF


Domain annotation for each model (and alignments):
>> TIGR03196  pucD: xanthine dehydrogenase D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.002         2     617     656 ..     204     243 ..     187     249 .. 0.92
   2 !    7.2   0.0   0.00028      0.29     606     656 ..     284     335 ..     253     340 .. 0.74
   3 !    3.5   0.0    0.0038       3.9     618     657 ..     343     382 ..     336     404 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.002
   TIGR03196 617 yaaaaaavvvevdldlGlvklvdmelaidaGtvlsplalr 656
                  aaaa ++ v+  ++lG   + +m    ++G v++pl +r
  MMETSP1174-20130828|6678_1 204 QAAAARRASVQSKINLGATEVGKMFDEPETGEVVTPLNYR 243
                 5899***********************************9 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00028
   TIGR03196 606 davGqgdghvly.aaaaaavvvevdldlGlvklvdmelaidaGtvlsplalr 656
                  ++   d+ v   aaa+ ++ v+  +dlG  ++ +m    ++G v++p+++r
  MMETSP1174-20130828|6678_1 284 TPQTYRDPEVRKrAAASRRASVQSKMDLGATQVGKMFDEPETGEVVTPQTYR 335
                 445666787765155667899****************************999 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0038
   TIGR03196 618 aaaaaavvvevdldlGlvklvdmelaidaGtvlsplalrG 657
                 aaaa ++ ++  + lG   + +m    ++G v++p+++r 
  MMETSP1174-20130828|6678_1 343 AAAARRASMQSKISLGATEVGKMFDEPETGEVVTPQTYRD 382
                 789999********************************95 PP

>> TIGR03560  F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.025        26      68      92 ..     233     257 ..     222     278 .. 0.81
   2 ?    2.7   0.0      0.02        20      68      88 ..     279     299 ..     268     317 .. 0.81
   3 ?    3.3   0.0     0.013        14      68      89 ..     325     346 ..     320     363 .. 0.74
   4 !    3.9   0.0    0.0082       8.4      68      90 ..     371     393 ..     367     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.025
   TIGR03560  68 lgtlvtgvtyRePgllAkivatvDv 92 
                  g++vt+ +yR P +  k++a+  +
  MMETSP1174-20130828|6678_1 233 TGEVVTPLNYRDPKVRKKAAAARRA 257
                 5899**********99998887555 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.02
   TIGR03560  68 lgtlvtgvtyRePgllAkiva 88 
                  g++vt++tyR P +  +++a
  MMETSP1174-20130828|6678_1 279 TGEVVTPQTYRDPEVRKRAAA 299
                 6899*********99777666 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.013
   TIGR03560  68 lgtlvtgvtyRePgllAkivat 89 
                  g++vt++tyR P +  +++a+
  MMETSP1174-20130828|6678_1 325 TGEVVTPQTYRDPEVRKRAAAA 346
                 5899*********987766665 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.0082
   TIGR03560  68 lgtlvtgvtyRePgllAkivatv 90 
                  g++vt++tyR P +  k++a+ 
  MMETSP1174-20130828|6678_1 371 TGEVVTPQTYRDPEVRKKAAAAR 393
                 5899**********999888865 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05     0.018     111     186 ..     162     237 ..     130     243 .. 0.86
   2 ?   -2.1   0.0      0.37   3.8e+02     152     185 ..     340     374 ..     338     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
   TIGR03005 111 apvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvll.fdevtsaldpelveevl 186
                  p++   ++ra  e+r  el +m    +k  a p+++s  q+++ a ar  +++ k+ l   ev   +d    +ev+
  MMETSP1174-20130828|6678_1 162 NPLRLARIKRAW-EERKKELNQMGEEDNKEPAAPVKMSPQQRKQAAAARRASVQSKINLgATEVGKMFDEPETGEVV 237
                 578888888885.77889999999999999***************************88346788888766667765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.37
   TIGR03005 152 kqrvaiaralalrpkvll.fdevtsaldpelveev 185
                 ++r a ar  +++ k+ l   ev   +d    +ev
  MMETSP1174-20130828|6678_1 340 RKRAAAARRASMQSKISLgATEVGKMFDEPETGEV 374
                 57999999999**9998734567666665555555 PP

>> TIGR02739  TraF: type-F conjugative transfer system pilin assembly protein TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   6.2e-05     0.064      39     128 ..      23     113 ..      13     144 .. 0.76
   2 ?   -1.9   0.2      0.35   3.6e+02      35      66 ..     178     206 ..     167     228 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.2e-05
   TIGR02739  39 eekkpkpvplapsqeskklspteqlkllrketkealneAilnps.venlarylklqqfwlkqasqfsetfkkalLahPeldytlerptena 128
                 e kk+     a+  +++ l  t+  +l+++e++ + +eA  + +  e l+r+ ++ +  l++  +fs+t++ ++   P+  ++ e+p +  
  MMETSP1174-20130828|6678_1  23 EMKKVLAARRASLAQQVDLGQTNVGELFEQEVEGKDAEAPATYHnPETLKRLASARRASLAKQVDFSKTAMGKMFNSPDEGQEAEAPATYH 113
                 445555555555556666888999999******999999655444***********************************99999986544 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.35
   TIGR02739  35 keeke.ekkpkpvplapsqeskklspteqlkll 66 
                 ke  +  ++ +++p+ap    +k+sp++++++ 
  MMETSP1174-20130828|6678_1 178 KELNQmGEEDNKEPAAP----VKMSPQQRKQAA 206
                 33333223444444444....556666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1244.90
//
Query:       MMETSP1174-20130828|6684_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.9   0.4        2.3    5.7   0.0    2.3  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0   0.00089       3.6      30      42 ..      61      73 ..      57      76 .. 0.84
   2 ?    5.7   0.0   0.00057       2.3      28      42 ..      95     109 ..      93     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00089
   TIGR01411 30 lGkaikeFKkalk 42
                 ++a+k FKka++
  MMETSP1174-20130828|6684_1 61 DARAVKCFKKAAN 73
                589********97 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00057
   TIGR01411  28 rdlGkaikeFKkalk 42 
                  d ++a+k FKka+ 
  MMETSP1174-20130828|6684_1  95 QDHARAMKWFKKAAD 109
                 5889*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.48
# Mc/sec: 415.22
//
Query:       MMETSP1174-20130828|6685_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 876.78
//
Query:       MMETSP1174-20130828|6688_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   12.2   0.0      0.048    9.5   0.0    1.8  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.1   0.0    0.0042        17     130     148 ..       6      24 ..       2      35 .. 0.89
   2 !    9.5   0.0   1.2e-05     0.048     127     150 ..      38      61 ..      26      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.0042
   TIGR00870 130 kgitalilAihkqnyeivk 148
                  g t+l +A + +++ +v+
  MMETSP1174-20130828|6688_1   6 TGCTPLFIATQMDEVDVVR 24 
                 699************9997 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 1.2e-05
   TIGR00870 127 eftkgitalilAihkqnyeivklL 150
                 +  +g t+l +A+++ n+ +v+ L
  MMETSP1174-20130828|6688_1  38 TTDAGCTPLFIAAENHNLDVVRYL 61 
                 456899***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 232.72
//
Query:       MMETSP1174-20130828|6689_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 684.39
//
Query:       MMETSP1174-20130828|6686_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-10   37.4   0.0    2.1e-10   36.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00011   19.5   0.0    0.00022   18.6   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0     1e-13   2.1e-10      19     137 ..     128     247 ..     114     258 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1e-13
   TIGR03903  19 erlvaRFrReialCarLshPnivaLlDsGea.edgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahd...aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved 137
                 +   + F +eia+  rL+hP +v+ l    + e   l  v e+     + + ++a  +++ ++  +  + +  +la  h+     ++hRD+kP n m++ +      k+ DFGi+ L   ++ 
  MMETSP1174-20130828|6686_1 128 TVDARLFEKEIAVMRRLHHPRVVQFLGFAMSsETAGLNLVMELFTHGSVEDYIKAGNSVSWETSIHWCVEMAQSLAYIHNlkpDNIIHRDIKPGNFMLTDS---LRVKLGDFGIARLFNSADS 247
                 3334459*******************97765145568999**99999*******************9999999999999855568*************865...5689*******99877655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-07   0.00022      72     141 ..     164     244 ..      99     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-07
   TIGR03724  72 kkivmeyiegkklkdlleekel.......ellkevGelvgklHka...givhgDlttsNiivk.ddklyliDfGLgkkske 141
                  ++vme      ++d++++ +        + + e+++ ++ +H+    +i+h D+ + N++++ + ++ l DfG+++  ++
  MMETSP1174-20130828|6686_1 164 LNLVMELFTHGSVEDYIKAGNSvswetsiHWCVEMAQSLAYIHNLkpdNIIHRDIKPGNFMLTdSLRVKLGDFGIARLFNS 244
                 5789999999999999999887888888899************963337*************725589999****987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.50
# Mc/sec: 1193.18
//
Query:       MMETSP1174-20130828|6692_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1141.53
//
Query:       MMETSP1174-20130828|6695_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|6699_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 585.15
//
Query:       MMETSP1174-20130828|6701_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|6698_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1222.12
//
Query:       MMETSP1174-20130828|6700_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1906.08
//
Query:       MMETSP1174-20130828|6704_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-14   50.3   0.0    4.4e-12   42.5   0.0    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.4e-13   48.0   0.0    3.9e-10   37.5   0.0    2.9  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.4e-09   34.8   0.0    4.9e-07   27.4   0.0    2.4  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.1e-07   26.5   0.0    0.00011   18.8   0.0    2.8  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.3e-15   4.4e-12     443     532 ..      21     110 ..      11     121 .. 0.95
   2 !    5.8   0.0   0.00055      0.57     177     227 ..     129     179 ..     119     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 4.3e-15
   TIGR02917 443 rsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpkn 532
                 + ++f++al+  ++  +  p nas +n+ g  + + ++l +A  a++kA k++p+f  A+ nLA+l++++++ + A + f+++l  dp  
  MMETSP1174-20130828|6704_1  21 QMKDFNRALKDFQRTVAHDPSNASNWNYVGLCMAQLGNLGEAFIAYKKAVKLDPNFKEAIGNLAQLHRENGDGPTALKVFDRALGVDPSY 110
                 4579********************************************************************************999975 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00055
   TIGR02917 177 earalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnai 227
                 +a    ++ L  dp +   l+++g   +s+g ++ A+++y+  ++++p +i
  MMETSP1174-20130828|6704_1 129 QALSDFSRGLGVDPCHLACLNFRGICYQSLGAFKDANESYNALLRIDPTNI 179
                 566666777889999999999999999999999999999999999999987 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.8e-13   3.9e-10      32     166 ..      10     142 ..       5     142 .. 0.90
   2 !   14.4   0.0   4.3e-06    0.0044      42     107 ..      88     153 ..      81     169 .. 0.85
   3 !    6.6   0.0     0.001       1.1      45      98 ..     125     178 ..     125     183 .. 0.91
   4 ?    2.7   0.0     0.016        17      71      98 ..     151     178 ..     145     193 .. 0.63

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.8e-13
   TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie.dpkYeqparsyeNaglcalkagdtekaekyltralkidp 166
                 +i+ q++l   + +d+++A ++ +  +++dp++a+ ++  +l   qlg+l++A  +++kA++l+pn  ++  N      ++++   A + f++A+  dp Y      +   glc+  +g+t +a + ++r l +dp
  MMETSP1174-20130828|6704_1  10 DIYAQKGLMLHQMKDFNRALKDFQRTVAHDPSNASNWNYVGLCMAQLGNLGEAFIAYKKAVKLDPNFKEAIGNLAQLHRENGDGPTALKVFDRALGvDPSYVA---GWHLRGLCSHGLGQTVQALSDFSRGLGVDP 142
                 57889999999999***********************************************************999888888999*********853788875...56779**************99999998886 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.3e-06
   TIGR02521  42 leqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGt 107
                  e+gd  +A +  + Al +dp++   ++ ++l    lg++ +A   f ++l ++p   + lN  G 
  MMETSP1174-20130828|6704_1  88 RENGDGPTALKVFDRALGVDPSYVAGWHLRGLCSHGLGQTVQALSDFSRGLGVDPCHLACLNFRGI 153
                 589999*************************************************99999886665 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.001
   TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnn 98 
                 g++ +A  +    l +dp      + +++ yq+lg  + A+es++  l+++p n
  MMETSP1174-20130828|6704_1 125 GQTVQALSDFSRGLGVDPCHLACLNFRGICYQSLGAFKDANESYNALLRIDPTN 178
                 677899999999999999999999*********************999999977 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.016
   TIGR02521  71 lAlyyqqlgelekAeesfrkAltlkpnn 98 
                 +++ yq+lg  + A+es++  l+++p n
  MMETSP1174-20130828|6704_1 151 RGICYQSLGAFKDANESYNALLRIDPTN 178
                 4455555555555555555555555543 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.7e-10   4.9e-07      26     114 ..      17     105 ..      10     111 .. 0.93
   2 !    5.0   0.0     0.004       4.1      59     116 ..     118     175 ..     106     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.7e-10
   TIGR02552  26 YnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                   l q +++++A+k Fq  +a dp +a  w   ++c+ +l++  eA  aY+ a++ld++  +++  +a+ + + g+   Alk +++a+ 
  MMETSP1174-20130828|6704_1  17 LMLHQMKDFNRALKDFQRTVAHDPSNASNWNYVGLCMAQLGNLGEAFIAYKKAVKLDPNFKEAIGNLAQLHRENGDGPTALKVFDRALG 105
                 5678999*****************************************************************************99975 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.004
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                 ++c + l++  +A+  +++ + +d+ + + +  +++c+  lg  ++A++  ++ ++i+
  MMETSP1174-20130828|6704_1 118 GLCSHGLGQTVQALSDFSRGLGVDPCHLACLNFRGICYQSLGAFKDANESYNALLRID 175
                 7888888888899999999999998888888888899988888888888777766665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-07   0.00011     397     495 ..       7     105 ..       4     108 .. 0.89
   2 !    2.6   0.0    0.0084       8.6     166     213 ..     117     164 ..     104     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1e-07
   TIGR00990 397 edsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaie 495
                  d+diy  ++ +    ++f+ a kd+++++  dp +   +  ++    +lg++ ++   +++a+k  p+  +     a+l  ++ +   al+ fd a+ 
  MMETSP1174-20130828|6704_1   7 RDPDIYAQKGLMLHQMKDFNRALKDFQRTVAHDPSNASNWNYVGLCMAQLGNLGEAFIAYKKAVKLDPNFKEAIGNLAQLHRENGDGPTALKVFDRALG 105
                 689999999999999999999999999999999999998888888888999999999999999999999999999999999999999999999999875 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0084
   TIGR00990 166 raacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyada 213
                 r  c   l++  + + d  + l +dp +   ln r   y+ lg ++da
  MMETSP1174-20130828|6704_1 117 RGLCSHGLGQTVQALSDFSRGLGVDPCHLACLNFRGICYQSLGAFKDA 164
                 567899999999999999999999999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1954.08
//
Query:       MMETSP1174-20130828|6705_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|6713_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 901.93
//
Query:       MMETSP1174-20130828|6715_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1174-20130828|6711_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1367.27
//
Query:       MMETSP1174-20130828|6714_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.84    7.5   6.8        1.7    6.5   4.7    1.5  1  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.7    0.0004       1.7      30      62 ..       6      38 ..       1      42 [. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0004
   TIGR02209 30 nselqklqaeieklqkewndLqlEvaelsrheR 62
                 +++++++++  +l+ke+++L++E++e+ + +R
  MMETSP1174-20130828|6714_1  6 LMDREEMERQLVQLKKENARLRQERQEEQQGKR 38
                6899*********************99987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1157.21
//
Query:       MMETSP1174-20130828|6716_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|6720_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1174-20130828|6723_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1174-20130828|6728_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.2   0.0      0.024   12.7   0.0    1.4  1  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.8e-06     0.024       2      33 ..       9      40 ..       8      42 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.8e-06
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivP 33
                + n+ i+++ k g++ +++e+ +  +++ +  
  MMETSP1174-20130828|6728_1  9 SLNAAIKACEKGGQWQKVIEIVEMWLRSEVPV 40
                56999*****************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|6721_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1179.39
//
Query:       MMETSP1174-20130828|6733_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 434.29
//
Query:       MMETSP1174-20130828|6735_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.5    2.6  10.2        7.9    2.6   7.1    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   7.1    0.0019       7.9     213     309 ..      24      97 ..       5     101 .] 0.46

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0019
   TIGR03591 213 lakevgkekleveakeedeelkkkveelaeekelkealkieekqereealeevkeevleelaeeeeeeeeeeeekeikellkelekklvRerilkek 309
                 ++k+ +k++ ++  k+++  l +k++++a++k++++ +++++k+er+++ ++  e+++                        e ++k+ R ++l+++
  MMETSP1174-20130828|6735_1  24 VKKQNQKKEDALRWKQQNDLLMAKLQQAAKSKKVANEINTARKEERDKKEAQEAENAK-----------------------YEAKAKERRAALLEKQ 97 
                 2222233333333334444555555665555555555555555555554444444333.......................3333333344444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       704  (0.171624); expected 82.0 (0.02)
Passed bias filter:                      276  (0.0672843); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 341.82
//
Query:       MMETSP1174-20130828|6737_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|6739_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-07   23.9   0.0      1e-06   23.7   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.4e-10     1e-06     760     825 ..       1      66 [.       1      70 [. 0.89

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.4e-10
   TIGR01257 760 laaacsgviyftlylphilcfawqdrltadlkkavsllssvafgfgteylvrfeeqglglqwsnig 825
                 laa +   i f+l lp  + f  +       k   slls+ af fg+e + ++e   +g+ w n  
  MMETSP1174-20130828|6739_1   1 LAAIVGPTILFSLILPRYILFDTNRYEEETAKAWFSLLSPTAFCFGAEIISEYEYAEIGISWENAD 66 
                 67888889*************98777777778889***************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 267.75
//
Query:       MMETSP1174-20130828|6743_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   13.0   0.0      0.017   12.3   0.0    1.4  1  TIGR03199 pucC: xanthine dehydrogenase C subunit


Domain annotation for each model (and alignments):
>> TIGR03199  pucC: xanthine dehydrogenase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.1e-06     0.017     136     190 ..      89     141 ..      82     178 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.1e-06
   TIGR03199 136 LeeWLseedtkeealvteveiapraetkefvlyekvGrretftaslv.svaGkall 190
                 L++ +++ dt   +lv +  +  +  ++ + +ye+vGrr+  t+ ++ +  G+  l
  MMETSP1174-20130828|6743_1  89 LSKIIEDDDT-SSQLVEGFDL--QRSPRYRFFYEQVGRRNRVTPEAAaTNRGRKNL 141
                 5555555555.8999999999..6667899*************9654155566554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 873.16
//
Query:       MMETSP1174-20130828|6742_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    5.0   7.0      0.091    9.0   0.2    2.1  2  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein


Domain annotation for each model (and alignments):
>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.2      0.04   1.6e+02     294     316 ..      33      55 ..      15      67 .. 0.54
   2 ?    9.0   0.2   2.2e-05     0.091     291     320 ..     133     162 ..     113     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.04
   TIGR03287 294 dlrvkynperClnCkvClveekC 316
                 + r k ++ rC++C   + ee C
  MMETSP1174-20130828|6742_1  33 SQRKKKEKARCIQCVGKSQEELC 55 
                 23444455555555555555544 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 2.2e-05
   TIGR03287 291 entdlrvkynperClnCkvClveekCPvea 320
                 +++++r++   +rC++C+  ++ ++CP   
  MMETSP1174-20130828|6742_1 133 QKHTVRPTSASQRCQKCDGVHASNACPHYR 162
                 5789***********************873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 1048.58
//
Query:       MMETSP1174-20130828|6746_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|6745_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.4   0.1      0.012   13.1   0.1    1.1  1  TIGR02977 phageshock_pspA: phage shock protein A


Domain annotation for each model (and alignments):
>> TIGR02977  phageshock_pspA: phage shock protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     3e-06     0.012     120     211 ..      29     124 ..      13     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3e-06
   TIGR02977 120 ediekLeekleea.rarqkalvlRe...kaAesrlkvreqldsekveealarfeqlerrvdeleaeaeaydlgkkksledefaeLeaedeiekela 211
                 +++ +L++kl +a +a  +  + R+   ++A+ rlkv ++ ++e++ e +  f qle+ + + + e+  +dl  +k   +++ +L+ ++e e++l 
  MMETSP1174-20130828|6745_1  29 KNLIELQKKLLTAvQAIPEDAAYRQsveATANYRLKVATENEDEDTIEKMIAFGQLEELIGQGNDELSLIDLYAEKRGWEKVVDLDWKAETEDDLS 124
                 56777888876662444455555542226899***************************************999999999999**99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 539.96
//
Query:       MMETSP1174-20130828|6747_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-13   47.0   0.1      9e-13   45.6   0.0    1.7  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.8e-12   43.2   0.0    5.6e-12   42.6   0.0    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    7.1e-11   39.7   0.0    2.4e-10   37.9   0.0    1.8  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.2e-08   30.4   0.0      1e-07   29.2   0.0    1.7  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    3.1e-06   24.0   0.6    0.00024   17.7   0.0    2.8  3  TIGR03689 pup_AAA: proteasome ATPase
    0.00012   18.6   0.0    0.00012   18.6   0.0    2.7  3  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00018   17.9   0.0    0.00018   17.9   0.0    1.9  2  TIGR00763 lon: ATP-dependent protease La
     0.0029   14.0   0.1     0.0077   12.6   0.0    1.7  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0037   15.1   0.0     0.0037   15.1   0.0    2.4  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
  ------ inclusion threshold ------
      0.066   10.7   0.1      0.066   10.7   0.1    2.3  3  TIGR01351 adk: adenylate kinases


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.2e-15     9e-13      88     240 ..     334     481 ..     287     518 .. 0.80
   2 ?   -2.8   0.0         1   4.2e+02     253     306 ..     537     590 ..     530     592 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2.2e-15
   TIGR01241  88 iP.kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGa.srvrDlfeqakkna.PciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhak 240
                 +P + +ll+GpPGtGkt++a+ +a  +g+ +  +sG d   +  G  a +++  lf  ak +    ++fiDe +a   +r++ l+ ++d r ++Ln lL +  G ++ e ++vl atnr++ LD+a+l   r+D  +   +P+   r+ +++++  
  MMETSP1174-20130828|6747_1 334 VPfRHLLLYGPPGTGKTMVAQRMARASGMDYALMSGGDVGPL--GKDAvTQLHALFRWAKGSKkGLLLFIDEAEAFLGSRSK-LSMSEDLR-NALNALLYQT-GTQSYEFMMVL-ATNRAEDLDSAVL--DRMDESLYFPLPNPILRQTLVRLYFT 481
                 4447789*******************************7654..4444268999******76515678*******9999999.77777777.68*****875.66666665555.7***********9..59999999999998888888777655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1
   TIGR01241 253 varrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrv 306
                 +++r  GfsG +++ l+  a   a  + ++++++k l+  ++  +   ++k  +
  MMETSP1174-20130828|6747_1 537 ISERLEGFSGREISKLMIAAQSSAYGSIDQTLNMKRLDAVIQLKVSEHQRKMEM 590
                 677888999999999999999999999999999999998888777777766555 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.4e-14   5.6e-12     486     636 ..     335     481 ..     314     557 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.4e-14
   TIGR01243 486 ppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapa.iifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtr 636
                 p + +ll+gppgtgkt++a+ +a  sg ++  + g ++      ++  ++  +fr a+ +    ++f+de +a   +r +   ++   + +n ll +  g +   + +++ atnr + ld a+l   r+d  ++ p p+   r  + +++  
  MMETSP1174-20130828|6747_1 335 PFRHLLLYGPPGTGKTMVAQRMARASGMDYALMSGGDVG-PLGKDAVTQLHALFRWAKGSKKGlLLFIDEAEAFLGSRSKLSMSEDLRNALNALLYQT-GTQS-YEFMMVLATNRAEDLDSAVL--DRMDESLYFPLPNPILRQTLVRLYFT 481
                 77899*******************************984.3445678899********998652689********99998777777778899999764.6555.56667779***********9..59***********9999988887643 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   5.8e-13   2.4e-10     155     303 ..     335     477 ..     330     495 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 5.8e-13
   TIGR01242 155 ppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklake.kapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilk 303
                 p + +llyGppGtGkt++a+ +a+ +   +  + g ++      +    ++ +f+ ak  k   ++fide +a    r + s s d  ++ +l  ll    G ++ +   ++ atnr + ld a+l   r+d  +  plp+   r  +++
  MMETSP1174-20130828|6747_1 335 PFRHLLLYGPPGTGKTMVAQRMARASGMDYALMSGGDVG-PLGKDAVTQLHALFRWAKGsKKGLLLFIDEAEAFLGSRSKLSMSED--LRNALNALL-YQTGTQSYE-FMMVLATNRAEDLDSAVL--DRMDESLYFPLPNPILRQTLVR 477
                 56779************************9999998864.4444555789********63778899************99999876..444555555.556877765.567779***********9..599**999***99777766665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-10     1e-07      14      90 ..     320     404 ..     304     418 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.4e-10
   TIGR00635  14 eklqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvklkitsgpalek.pgDlaailtal.......eegdvlfiDei 90 
                  +l ++ + a++++    h+llyGPPG Gkt +a+ +a+  g++  ++sg+ +    +D ++ l al       ++g +lfiDe 
  MMETSP1174-20130828|6747_1 320 TQLAIATRNARRNRVPFRHLLLYGPPGTGKTMVAQRMARASGMDYALMSGGDVGPlGKDAVTQLHALfrwakgsKKGLLLFIDEA 404
                 4788889999999999*************************99999999988753145655555554333333356667888885 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.43   1.7e+02      97     149 ..      60     113 ..      28     141 .. 0.64
   2 !   17.7   0.0   5.9e-07   0.00024     215     239 ..     335     359 ..     328     371 .. 0.85
   3 ?    2.9   0.0     0.019       7.6     288     351 ..     394     455 ..     379     484 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.43
   TIGR03689  97 vvealdaervGeivtlkevlddgralvvdk.adeervvklagalaeeklraGds 149
                 + ea  ++   e+   ++  +++r+++v++ + e+  v l + la+e++r+ d 
  MMETSP1174-20130828|6747_1  60 IFEAEATKIRKEAELAEQRGEEERLMLVKQgETEKATVDLEDRLAAERMRSEDE 113
                 444444444444444445555566655544055666788888888888888775 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 5.9e-07
   TIGR03689 215 pPkGvllyGPPGcGktliakavans 239
                 p + +llyGPPG+Gkt++a+ +a +
  MMETSP1174-20130828|6747_1 335 PFRHLLLYGPPGTGKTMVAQRMARA 359
                 55789**************998875 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.019
   TIGR03689 288 grPvvvffdemdslfrtrGs.GvssdvettvvPqllaeldGveslenviviGasnredlidPail 351
                  + +++f+de ++++  r    +s d+ + +   ll    G +s e ++v+ a+nr + +d a+l
  MMETSP1174-20130828|6747_1 394 KKGLLLFIDEAEAFLGSRSKlSMSEDLRNALNA-LLY-QTGTQSYEFMMVL-ATNRAEDLDSAVL 455
                 566789*********999863688899888754.444.3698888876665.9**********99 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.0   7.3        10   4.1e+03     206     282 ..      23     100 ..      11     205 .. 0.61
   2 !   18.6   0.0   2.9e-07   0.00012     312     334 ..     336     358 ..     311     365 .. 0.83
   3 ?   -2.7   0.1      0.82   3.4e+02     378     429 ..     398     451 ..     394     456 .. 0.70

  Alignments for each domain:
  == domain 1    score: -7.0 bits;  conditional E-value: 10
   TIGR03922 206 eklyandpetekvkeALadpsyrlvlt.daekieaRtDpWDpssaksr..aeledaaaaerkaklLaEaeaeLakqiGle 282
                 ++l a+++  +++k+AL++   rl++  da+ +e  t  ++++++k r  ael +++ +e++  l+  +e e a  + le
  MMETSP1174-20130828|6747_1  23 RHLEATEVAADDAKAALSELERRLEVEmDAQSVE-LTRIFEAEATKIRkeAELAEQRGEEERLMLVKQGETEKA-TVDLE 100
                 5667777777777777777777776641444444.344455554444400444455555555555555554422.23333 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.9e-07
   TIGR03922 312 skHlllaGPPGtGkttiArvvak 334
                  +Hlll GPPGtGkt +A+ +a+
  MMETSP1174-20130828|6747_1 336 FRHLLLYGPPGTGKTMVAQRMAR 358
                 48****************99886 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.82
   TIGR03922 378 vlFlDEayaLvekrdg.akddfGleaidtLLarlEndRdrlvviiAGYe.kdlD 429
                 +lF+DEa a +  r + +  +   +a++ LL +   +  +++++ A  + +dlD
  MMETSP1174-20130828|6747_1 398 LLFIDEAEAFLGSRSKlSMSEDLRNALNALLYQTGTQSYEFMMVLATNRaEDLD 451
                 699999999876643313344446799999999999999998888865414666 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.9       1.8   7.5e+02      72     103 ..      70     101 ..      14     213 .. 0.45
   2 !   17.9   0.0   4.5e-07   0.00018     334     387 ..     315     370 ..     272     375 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.8
   TIGR00763  72 elvklkdekskketlkvvleglrrikikelve 103
                 ++++l +++ ++e+l +v +g +  +  +l +
  MMETSP1174-20130828|6747_1  70 KEAELAEQRGEEERLMLVKQGETEKATVDLED 101
                 22222222222222222222222222222222 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 4.5e-07
   TIGR00763 334 vKeRilEy.lavk.klrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslG 387
                  KeR+    +a++  +r+++  + l l+GPPG GKt +a+ +A+a +  +  +s G
  MMETSP1174-20130828|6747_1 315 LKERVTQLaIATRnARRNRVPFRHLLLYGPPGTGKTMVAQRMARASGMDYALMSGG 370
                 488887753455424566777789**********************9999888866 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.96   3.9e+02      42     126 ..     146     228 ..     124     294 .. 0.53
   2 !   12.6   0.0   1.9e-05    0.0077     173     193 ..     335     354 ..     295     365 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.96
   TIGR02903  42 kkvlalqkivledkglevvpaakelaeiledledaiadilakrtveeeierkvekklverqekyleeirlqvlkekkgsensstl 126
                 ++ +  ++i+ ed+ l+ +     +a+  ++ e a  + +a r ++ +   + ++++ve    +le + +++ +  +++ +  tl
  MMETSP1174-20130828|6747_1 146 DRKMEADRILEEDRRLAELARVAAEAKARAEAERAN-EDIALRAIQAKGA-EDRRRVVEAVATFLEHLGRGLANLLENPRQLATL 228
                 455556677777777776666665555555555443.3345556655432.2345566666666666666655555555555544 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.9e-05
   TIGR02903 173 pfpqhiilyGppGvGkttaar 193
                 pf +h++lyGppG Gkt +a+
  MMETSP1174-20130828|6747_1 335 PF-RHLLLYGPPGTGKTMVAQ 354
                 44.7*************9985 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.8        10   4.1e+03     101     101 ..     170     170 ..     114     206 .. 0.58
   2 ?   -3.0   0.0       3.4   1.4e+03      68      83 ..     302     317 ..     293     327 .. 0.71
   3 !   15.1   0.0   9.1e-06    0.0037       5      41 ..     341     379 ..     338     391 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 10
   TIGR02173 101 e 101
                 e
  MMETSP1174-20130828|6747_1 170 E 170
                 1 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.4
   TIGR02173  68 iaekeknvvlesrlag 83 
                  a++ ++vvles l  
  MMETSP1174-20130828|6747_1 302 AAKEFDDVVLESILKE 317
                 5667789999998765 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 9.1e-06
   TIGR02173   5 isGpPGsGkttvakilaek..lslklisaGkirelaekk 41 
                 + GpPG+Gkt va+ +a+   +++ l+s+G++  l ++ 
  MMETSP1174-20130828|6747_1 341 LYGPPGTGKTMVAQRMARAsgMDYALMSGGDVGPLGKDA 379
                 569*************98722667889****98887765 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.8   7.3e+02     103     131 ..     113     141 ..     105     153 .. 0.80
   2 ?   10.7   0.1   0.00016     0.066       2      32 ..     339     371 ..     338     373 .. 0.78
   3 ?   -3.2   0.0       2.8   1.1e+03      99     117 ..     567     583 ..     562     586 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.8
   TIGR01351 103 lglkldavielkvpdevlverisgRricp 131
                  + ++++ +elk+++e +v++ ++Rr+  
  MMETSP1174-20130828|6747_1 113 EHERNRTSLELKLSEEAMVRQEENRRLTD 141
                 45567788999999999999999998765 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGd 32 
                 l+l GpPG+GK  +a+r+a   g  ++ +s Gd
  MMETSP1174-20130828|6747_1 339 LLLYGPPGTGKTMVAQRMARASGmdYALMSGGD 371
                 789***************988762244566666 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 2.8
   TIGR01351  99 lleelglkldavielkvpd 117
                 +l+   ++ldavi+lkv++
  MMETSP1174-20130828|6747_1 567 TLN--MKRLDAVIQLKVSE 583
                 443..45799******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 1534.70
//
Query:       MMETSP1174-20130828|6752_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1004.06
//
Query:       MMETSP1174-20130828|6758_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|6748_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    9.9   2.8        1.8    6.8   0.1    2.6  3  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.47   1.9e+03      30      35 ..      30      35 ..      14      49 .. 0.62
   2 ?    6.8   0.1   0.00045       1.8       8      39 ..      71     101 ..      69     119 .. 0.69
   3 ?    2.8   0.1    0.0078        32      42      54 ..     192     204 ..     182     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.47
   TIGR03655 30 eCktCg 35
                +Ck++ 
  MMETSP1174-20130828|6748_1 30 FCKNTK 35
                355443 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00045
   TIGR03655   8 GgadvslregeddldeveivaveCktCgasgp 39 
                 G+++  +++++ + ++  +++ eCk+C a+ +
  MMETSP1174-20130828|6748_1  71 GQTKP-VFHKKAKTTKKIVLRLECKECKAKKQ 101
                 66665.444455555555569*******9865 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.0078
   TIGR03655  42 eseaealeaWNrR 54 
                  ++ +a+  WN R
  MMETSP1174-20130828|6748_1 192 PAQHAAVVNWNAR 204
                 5678999****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|6759_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1395.88
//
Query:       MMETSP1174-20130828|6763_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 1875.02
//
Query:       MMETSP1174-20130828|6757_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-60  200.3   0.9    2.4e-60  200.1   0.6    1.0  1  TIGR01025 rpsS_arch: ribosomal protein S19
      2e-16   57.9   0.3    3.8e-16   57.0   0.1    1.5  1  TIGR01050 rpsS_bact: ribosomal protein S19


Domain annotation for each model (and alignments):
>> TIGR01025  rpsS_arch: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.6   1.2e-63   2.4e-60       2     135 .]      13     146 .]      12     146 .] 0.99

  Alignments for each domain:
  == domain 1    score: 200.1 bits;  conditional E-value: 1.2e-63
   TIGR01025   2 kkefryrGytleelldmsleelvkllparqrrklkrGltrkqkkllkklrkakkeatkgkkpevvrthlrdmiilpemvGlvvgvynGkefveveikpemiGhylgefaltrkkvkhgapGvGatrsskfvplk 135
                 +k+f +rG++le+lldm+  e+++ ++arqrr+++rGl rk ++l+ +l+kakk a+ g+kpe v+th+r mii+pem+G++vgvynGk f+ +eikpem+Ghylgef++t+k+v+hg+pG+G+t+ss+f+plk
  MMETSP1174-20130828|6757_1  13 FKKFMFRGIDLEKLLDMNHAEFAEKINARQRRRMNRGLNRKCNTLMSRLKKAKKAAPAGEKPEGVKTHVRSMIIVPEMIGSIVGVYNGKVFNGIEIKPEMVGHYLGEFSITYKPVRHGRPGIGSTNSSRFIPLK 146
                 79***********************************************************************************************************************************8 PP

>> TIGR01050  rpsS_bact: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   1.9e-19   3.8e-16      15      83 ..      60     129 ..      46     133 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.9e-19
   TIGR01050  15 llkkvekln.ekekkkviktwsRrstilPelvgltievynGkkfipvyiteemvGhklGefaptrkfkgh 83 
                  lkk +k+  + ek + +kt+ R+ +i+Pe++g  + vynGk f  + i+ emvGh lGef+ t k   h
  MMETSP1174-20130828|6757_1  60 RLKKAKKAApAGEKPEGVKTHVRSMIIVPEMIGSIVGVYNGKVFNGIEIKPEMVGHYLGEFSITYKPVRH 129
                 35666665536677799***********************************************887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 741.17
//
Query:       MMETSP1174-20130828|6766_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-46  155.2   0.2    3.5e-46  155.0   0.2    1.0  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    1.7e-05   20.7   0.0    1.9e-05   20.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.024   12.7   0.2       0.12   10.4   0.0    2.1  2  TIGR01044 rplV_bact: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.2   2.6e-49   3.5e-46      38     197 ..       1     176 [.       1     178 [. 0.96

  Alignments for each domain:
  == domain 1    score: 155.0 bits;  conditional E-value: 2.6e-49
   TIGR03724  38 klrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiivk......ddklyliDfGLgkkskevedkavDlhvlkrslestheelaeelieaflegYkeeveeekavlekvkeiesrgR 197
                 k+ ++R+ +Ear+++++++ g+ tP++++vd+e+++i me+i+g ++k+ l+e  +           ++ k+vG +v+k+H+a+++hgDlttsNi+++      ++ ++liDfGLg++s+  edkavDl+vl+rsl+sth++ ++ l +++l++Yk++ ++++av++k+ ++++rgR
  MMETSP1174-20130828|6766_1   1 KITSRRVMQEARCIMKCRRIGLDTPALLMVDTESSRIFMERINGATVKQRLNELYDsdaetfspealQISKAVGAAVAKMHNADLIHGDLTTSNIMLRsqkftpQEGVVLIDFGLGSQSNMNEDKAVDLYVLERSLTSTHAN-SSPLADEILREYKKICRRSDAVMQKLANVRARGR 176
                 68899***********************************************98878999*************************************86777777889**********************************.*********************************9 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.4e-08   1.9e-05      58     141 ..      39     128 ..      21     155 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.4e-08
   TIGR03903  58 FeyveGrtlrevLaa....dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh..akvLDFGigaLlpgvedadea 141
                  e ++G t++++L+     d    + e  ++   v  a+a  h+a ++h DL   nim+  +  +++    ++DFG+g+     ed ++ 
  MMETSP1174-20130828|6766_1  39 MERINGATVKQRLNElydsDAETFSPEALQISKAVGAAVAKMHNADLIHGDLTTSNIMLRSQKFTPQegVVLIDFGLGSQSNMNEDKAVD 128
                 588999999999975111144444445556666677888999*****************99999887224567*****987766665544 PP

>> TIGR01044  rplV_bact: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.1e-05      0.12      11      70 ..      33      95 ..      27     102 .. 0.78
   2 ?    1.3   0.0     0.063        86      28      61 ..      96     128 ..      83     179 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.1e-05
   TIGR01044 11 rkarlvidlirGkevaealdiLeftpkka....aelvekvlksaianaehnneldadelvvakv 70
                + +r+ ++ i G  v+++l+ L  ++ ++    a  ++k + +a+a   hn +l   +l  +++
  MMETSP1174-20130828|6766_1 33 ESSRIFMERINGATVKQRLNELYDSDAETfspeALQISKAVGAAVAKM-HNADLIHGDLTTSNI 95
                668999***************9766554322226689*********98.999887777776665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.063
   TIGR01044  28 aldiLeftpkkaaelvekvlksaianaehnneld 61 
                  l + +ftp+++  l++  l s   n ++++ +d
  MMETSP1174-20130828|6766_1  96 MLRSQKFTPQEGVVLIDFGLGSQS-NMNEDKAVD 128
                 456677888888877777666642.333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 800.73
//
Query:       MMETSP1174-20130828|6769_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|6770_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|6767_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   0.2      0.027   12.1   0.1    1.0  1  TIGR04061 AZL_007950_fam: AZL_007950 family protein


Domain annotation for each model (and alignments):
>> TIGR04061  AZL_007950_fam: AZL_007950 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.6e-06     0.027     117     156 ..       8      49 ..       2      55 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.6e-06
   TIGR04061 117 vvdwk..ksiragaevveeeeelPapewefaycalagkelde 156
                 v+++k  k++r++++ ++++++lP+p+ +  ++ ++g++ +e
  MMETSP1174-20130828|6767_1   8 VTKAKevKQVRRAHQRKDRRNSLPKPKVTNKWTVVTGQNRSE 49 
                 5566655678888888899*****************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|6774_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|6777_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1174-20130828|6782_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-24   82.8   0.1    5.7e-24   82.8   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.6e-17   61.2   0.0    3.2e-09   34.6   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.2e-17   59.6   8.5    2.5e-07   27.4   0.0    3.1  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    7.8e-16   56.1   9.6    3.5e-08   30.9   0.0    2.8  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      5e-08   30.0  11.2    4.8e-05   20.2   0.0    3.1  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.4e-07   28.5   0.1    0.00037   17.2   0.0    3.4  4  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.4e-06   25.3   0.0    5.4e-06   24.1   0.0    1.5  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
      3e-06   24.3   0.0     0.0077   13.1   0.0    2.5  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   4.8       2.7   1.4e+03      77     118 ..      31      71 ..       3      97 .. 0.38
   2 !   82.8   0.0   1.1e-26   5.7e-24      84     295 ..     127     338 ..     108     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2.7
   TIGR01622  77 erekerrredevrrkrkeredrrerrek.eerlkeelteeeRD 118
                 e++ +++++d+    +k +++++  +e+ + +   +  e+++D
  MMETSP1174-20130828|6782_1  31 EKKLKKKKKDSDSDDKKLKKSKK--KETlQSGASTPSVEAKKD 71 
                 22222111111111111111111..111122222222222222 PP

  == domain 2    score: 82.8 bits;  conditional E-value: 1.1e-26
   TIGR01622  84 redevrrkrkeredrrerrekeerlkeelteeeRD.artvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAl.altGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDp.etGrskGyGFiqFsdaeeakeAlek.lNG.lelAGReikvgl 295
                 + d+ +rkrk++ + ++  + +  +++ ++ +  +  +t++v  +   ++e d+k F  ++g v dvr+ + + S++ +G a vEF+d e    A+ +l+G +l+g+ +++++++A K  a+   t++s   p     + ++v nl +n  E+++ +    FG+++ v+l  D  e  r kG+G++ F++ + a++A ++ + G l + GR + v +
  MMETSP1174-20130828|6782_1 127 EADKPKRKRKRKAKGKPAADAQTEVNDTVARASSNvCLTIYVEGISYDADENDVKQFMIRAGTVTDVRMPRWHDSGKPRGYAHVEFKDGEMAMRAVkELNGERLMGRFLKIELAKAPKAPAVP--TNVSTPPP---DCTTIFVKNLPYNSDEESVMKALARFGSVKEVRLAYDHgEQKRFKGFGYVHFQEPGSAQAAVKAfVEGnLLVGGRRVIVDF 338
                 33344444444444444444444566777666554269*************************************************96655555527********************99998..77775555...6789*********************************7467799*****************98735788999999998866 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   6.3e-12   3.2e-09     216     344 ..     114     239 ..      37     247 .. 0.71
   2 !   24.8   0.0   6.1e-09   3.1e-06     269     348 ..     259     342 ..     244     345 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 6.3e-12
   TIGR01661 216 rlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsf 344
                 ++ + d  +v       +   +++  + ++ +aad+++  +      a s+ +   i+v  +s d+de+ + q++ + G+v++v++ r  ++ k +Gy+ v   + + a+ a++ lnG +l +r l++ +
  MMETSP1174-20130828|6782_1 114 SPAPHDDAEVT--TTEADKPKRKRKRKAKGKPAADAQTE-VNDTVARA-SSNVCLTIYVEGISYDADENDVkQFMIRAGTVTDVRMPRWHDSGKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIEL 239
                 33344444433..23333333444556677888888883.32333333.344566677779******987659999**************************************************9865 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 6.1e-09
   TIGR01661 269 gycifvynlspdtd.eavlqlfgpfGavqsvkiirdlttn.kckGygfvsmtnydeaalailsl.nGytl.gnrvlqvsfktnk 348
                    ifv nl  ++d e+v++ +++fG+v++v++  d   + + kG+g+v   +   a  a++++ +G  l g+r + v f +n+
  MMETSP1174-20130828|6782_1 259 CTTIFVKNLPYNSDeESVMKALARFGSVKEVRLAYDHGEQkRFKGFGYVHFQEPGSAQAAVKAFvEGNLLvGGRRVIVDFEANA 342
                 567******9998725789*****************9665168******************99724543347787778887775 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   7.5     0.065        33      70     164 ..      22     127 ..       3     153 .. 0.69
   2 !   27.4   0.0     5e-10   2.5e-07     287     383 ..     154     250 ..     114     256 .. 0.85
   3 !   27.1   0.0   6.2e-10   3.2e-07     291     358 ..     254     322 ..     248     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.065
   TIGR01642  70 s............rrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqakasqvansvpgiaqkssltstekll.aegskitdlp 164
                              +++ +d +  +++ ++s++ke  +s  +++s e kkd++      +k+         ++k   ++n+ p+ia  +++ ++  +   ++ ++t + 
  MMETSP1174-20130828|6782_1  22 EvvpttavkekklKKKKKDSDSDDKKLKKSKKKETLQSGASTPSVEAKKDEEDHCDEPMKKKTKSENGGKAYKIFVIKNEAPTIA--ATMSDAASPApHDDAEVTTTE 127
                 122344444444477777777777777889999999***********************99999999999************976..456665555434444555544 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 5e-10
   TIGR01642 287 vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatie 383
                 ++++++++    +y++++ +d +++ vk+ +   G +    + +  + G+ +Gya +e+kd  ++  A++ LnG +l ++ L++  A   + +a ++
  MMETSP1174-20130828|6782_1 154 TVARASSNVCLTIYVEGISYDADENDVKQFMIRAGTVTDVRMPRWHDSGKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAKAPKAPAVPT 250
                 455666667778**************************************************************************99999888776 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 6.2e-10
   TIGR01642 291 tvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdl.atGlsKGyaFceykdssvtdlAiaaL 358
                 t + +   ++++nLP++ +++ v   L  FG +k   l  d  ++   KG++++ ++++  ++ A++a 
  MMETSP1174-20130828|6782_1 254 TPPPDCTTIFVKNLPYNSDEESVMKALARFGSVKEVRLAYDHgEQKRFKGFGYVHFQEPGSAQAAVKAF 322
                 55555678*******************************998345567******************985 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.7       0.9   4.6e+02     475     532 ..       7      62 ..       1     121 [. 0.50
   2 !   29.8   0.1   1.4e-10   7.1e-08     262     362 ..     133     241 ..      80     245 .. 0.71
   3 !   30.9   0.0   6.9e-11   3.5e-08     287     346 ..     261     322 ..     257     343 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.9
   TIGR01628 475 kkqqnaaskanqanvkaqpq.aqsknqmqqvvqdnnlpqkqatksnnkestltaaalas 532
                 kk++++ sk+n ++++ +p  a +++++++  +d+    k+ +ks++k    t ++ as
  MMETSP1174-20130828|6782_1   7 KKKKEKKSKKNIEELEVVPTtAVKEKKLKKKKKDSDSDDKKLKKSKKK---ETLQSGAS 62 
                 444444555555555555543112123333333333222222222211...12222222 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.4e-10
   TIGR01628 262 aeReaelkak...feelkqe....rkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAq 362
                  +R++  k k     +++++    r + +    +Yv  +    d++++++   + G++t +++ +  +++k +g+  V f++ e A++Av+el+g+ l g+ L + lA+
  MMETSP1174-20130828|6782_1 133 RKRKRKAKGKpaaDAQTEVNdtvaRASSNVCLTIYVEGISYDADENDVKQFMIRAGTVTDVRMPRWhDSGKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAK 241
                 2222222222110223333300003344444568****************************9774499**********************************999996 PP

  == domain 3    score: 30.9 bits;  conditional E-value: 6.9e-11
   TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmld..ekekSkgFGFVcfssqeeAnkAvtel 346
                  ++vkNl  + d+e++ +   +fG+++ +++  d  e+++ kgFG+V f+++  A++Av+ +
  MMETSP1174-20130828|6782_1 261 TIFVKNLPYNSDEESVMKALARFGSVKEVRLAYDhgEQKRFKGFGYVHFQEPGSAQAAVKAF 322
                 46788888888888888888888888888888876667777788888888888888888765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   4.6       1.2     6e+02     403     528 ..       5     148 ..       2     187 .. 0.51
   2 !   20.2   0.0   9.3e-08   4.8e-05     267     307 ..     203     243 ..     199     249 .. 0.93
   3 !   13.7   0.0   8.6e-06    0.0044      51     119 ..     253     322 ..     244     336 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.2
   TIGR01648 403 ekkgkredklyelvpglelspvnpvalkpqGikaa..........paileeisrnaapaP..kiiedgriltlekiiipaavsqdpai.....aalappkasaavreakstpaeyqlrtlgvrtsagn.qriatagakakaydg 528
                 ekk k+e+k  + +++le+ p  +v+ k   +k +           + ++e+ + +a++P  +  +d+  +  e +      ++ + +         +p  +a++++a s +++      + ++++++ +r  +a +k +a   
  MMETSP1174-20130828|6782_1   5 EKKKKKEKKSKKNIEELEVVPTTAVKEKKLKKKKKdsdsddkklkKSKKKETLQSGASTPsvEAKKDEEDHCDEPMKKKTKSENGGKAykifvIKNEAPTIAATMSDAASPAPHDDAEVTTTEADKPKrKRKRKAKGKPAADAQ 148
                 788889999999999999999999987754333330000000000333334444556666432334444444444444333333222211111233466666666666665555455555567777764445555555555333 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 9.3e-08
   TIGR01648 267 kirdyafvhfedredavkamdelnGkeleGseievtlakPv 307
                 k r ya v f+d e a++a++elnG+ l G  + + lak +
  MMETSP1174-20130828|6782_1 203 KPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAKAP 243
                 5689***********************************76 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 8.6e-06
   TIGR01648  51 egaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknr..Gyafvtfcnkeeakeavkel 119
                 + ++P   + +fv  +P +  e+ ++  + + G + e+rl  d   + r  G+ +v f +   a+ avk  
  MMETSP1174-20130828|6782_1 253 S-TPPPDCTTIFVKNLPYNSDEESVMKALARFGSVKEVRLAYDHGEQKRfkGFGYVHFQEPGSAQAAVKAF 322
                 4.445557889********999999******************777665559999************9975 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.4   9.5         8   4.1e+03     450     485 ..      24      59 ..       1      86 [. 0.68
   2 ?   -4.8   2.6       3.2   1.6e+03     437     466 ..     110     139 ..      46     156 .. 0.59
   3 !   17.2   0.0   7.2e-07   0.00037     190     295 ..     151     257 ..     134     265 .. 0.72
   4 !   17.0   0.0   8.4e-07   0.00043     110     183 ..     264     341 ..     258     346 .. 0.81

  Alignments for each domain:
  == domain 1    score: -10.4 bits;  conditional E-value: 8
   TIGR01645 450 aaaalllenkkkkkekeeeelqpklveeeedeslae 485
                 + ++ + e+k kkk+k+ +   +kl +++++e+l++
  MMETSP1174-20130828|6782_1  24 VPTTAVKEKKLKKKKKDSDSDDKKLKKSKKKETLQS 59 
                 233444555556677777777777888888888876 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 3.2
   TIGR01645 437 sslalaaaakakeaaaalllenkkkkkeke 466
                 s +a  a  +++e++++ + ++k+k+k k 
  MMETSP1174-20130828|6782_1 110 SDAASPAPHDDAEVTTTEADKPKRKRKRKA 139
                 222223334556777777777777776665 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 7.2e-07
   TIGR01645 190 iidevqeeakkfn.ri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdallqPatvsalPa 295
                 + d+v++ + +    i v  +  d  e+d+k  +   G + + ++ r   ++k +G+  +ef++ +    a+  +n   l G++l++  a + P+a + P+ vs+ P+
  MMETSP1174-20130828|6782_1 151 VNDTVARASSNVClTIyVEGISYDADENDVKQFMIRAGTVTDVRMPRWHDSGKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAKA-PKAPAVPTNVSTPPP 257
                 44555554444321345777888888888888888888888888888888888888888888888888888888888888888888876654.566677888888776 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 8.4e-07
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqk.hkgfafve.evPeaallaleqm.nga.llGGrnlkvgrPsn 183
                 v  + ++  e+ + +a++ fG +k + +++d   qk  kgf +v  + P +a+ a     +g+ l+GGr + v+   n
  MMETSP1174-20130828|6782_1 264 VKNLPYNSDEESVMKALARFGSVKEVRLAYDHGEQKrFKGFGYVHfQEPGSAQAAVKAFvEGNlLVGGRRVIVDFEAN 341
                 55677888999********************9876537*******999******9987525651569**999985444 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     1e-08   5.4e-06     111     255 ..     167     322 ..     144     333 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1e-08
   TIGR01659 111 ivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar.pggesi.........kdtnlyvtnlprtitddqldtifgkygsivqknilrdkl.tgkprgvafvrfnkreeaqeaisal 255
                  v+ +  d  + ++  ++   g +   r+ r + +g   gya v+f     ++ra+k+lng  +  + lk+  a+ p    +           t ++v nlp    ++ +   + ++gs+ +  +  d+    + +g  +v f+    aq a+ a+
  MMETSP1174-20130828|6782_1 167 YVEGISYDADENDVKQFMIRAGTVTDVRMPRWHDSGKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAKaPKAPAVptnvstpppDCTTIFVKNLPYNSDEESVMKALARFGSVKEVRLAYDHGeQKRFKGFGYVHFQEPGSAQAAVKAF 322
                 4566777888888888888889*************************************************9997433322211111122234789***********************99999988875145679****************9986 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00032      0.16     288     372 ..     150     241 ..      67     251 .. 0.54
   2 !   13.1   0.0   1.5e-05    0.0077       4      76 ..     261     340 ..     258     350 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00032
   TIGR01649 288 sstapaasglgsVllvsnLeeekvtpd..alFnlfgvYGdvervkilk.....nkketalvemadpqqaqlalthLdkvklfgkklrvavSk 372
                 +     a+++++V l   +e     +d   + + +   G v+ v++ +     + ++ a ve+ d++ a +a++ L++ +l g+ l++ ++k
  MMETSP1174-20130828|6782_1 150 EVNDTVARASSNVCLTIYVEGISYDADenDVKQFMIRAGTVTDVRMPRwhdsgKPRGYAHVEFKDGEMAMRAVKELNGERLMGRFLKIELAK 241
                 22333344455554444444333333311344444445555555544311111123567777777777777777777777777777777666 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.5e-05
   TIGR01649   4 VvHvRnlpeevveadlvelliefGkvsyvlvl.......kgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqySt 76 
                  + v+nlp ++ e  ++++l +fG v  v +        ++k   +v f++  sA+a+V+   + ++ ++Gr v v++  
  MMETSP1174-20130828|6782_1 261 TIFVKNLPYNSDEESVMKALARFGSVKEVRLAydhgeqkRFKGFGYVHFQEPGSAQAAVKAFVEGNLLVGGRRVIVDFEA 340
                 589***********************99976533332223455689******************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.19s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 967.02
//
Query:       MMETSP1174-20130828|6792_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-11   42.4   0.0    2.2e-11   41.3   0.0    1.6  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    3.1e-08   31.2   0.0    4.9e-08   30.6   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    3.1e-05   21.7   0.0    4.4e-05   21.2   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00052   17.2   0.0    0.00061   17.0   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.014   12.8   0.0       0.02   12.2   0.0    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.7e-14   2.2e-11      86     144 ..      35      93 ..       1     103 [. 0.92

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 2.7e-14
   TIGR01934  86 eeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilef 144
                  +an++  ++da +Lpfed sfd++ +a  l  v d+ +aL e++RVlkpggrl+++++
  MMETSP1174-20130828|6792_1  35 DHANITVRVSDALTLPFEDGSFDVLIMAQVLLYVDDVPRALAEAIRVLKPGGRLLVCDT 93 
                 578999**************************************************997 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     6e-11   4.9e-08      94     159 ..      35     100 ..      25     106 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 6e-11
   TIGR02752  94 klenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcletsqptllg 159
                 +  n+++   +a+ lp+ed sfd + +   l  v d  + l e  rv+kpgg++   +t   +l++
  MMETSP1174-20130828|6792_1  35 DHANITVRVSDALTLPFEDGSFDVLIMAQVLLYVDDVPRALAEAIRVLKPGGRLLVCDTDWDSLVV 100
                 5678999999*******************************************9999998777766 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.4e-08   4.4e-05      78     133 ..      36      91 ..       8      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.4e-08
   TIGR02072  78 lsnvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                   n+++   d+ +lp+e+ sfD+ + + +l  +dd  ++lae+ rvlkpgG l++ 
  MMETSP1174-20130828|6792_1  36 HANITVRVSDALTLPFEDGSFDVLIMAQVLLYVDDVPRALAEAIRVLKPGGRLLVC 91 
                 338899999******************************************99875 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.5e-07   0.00061      99     152 ..      39      91 ..      11     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.5e-07
   TIGR01983  99 ieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfls 152
                 i  +++++ +l  e + sfDv+++  vl  v+d+ + l e++++lkpgg l++ 
  MMETSP1174-20130828|6792_1  39 ITVRVSDALTLPFE-DGSFDVLIMAQVLLYVDDVPRALAEAIRVLKPGGRLLVC 91 
                 55555555556555.678********************************9986 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.5e-05      0.02      70     102 ..      50      82 ..      28      87 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
   TIGR02081  70 afedksfDvvvlsqtlqavrnteeiLdellRvg 102
                  fed sfDv++++q l  v  + + L e +Rv 
  MMETSP1174-20130828|6792_1  50 PFEDGSFDVLIMAQVLLYVDDVPRALAEAIRVL 82 
                 49*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 996.75
//
Query:       MMETSP1174-20130828|6789_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.1   0.0    1.5e-05   22.7   0.0    1.2  1  TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT
    5.7e-05   21.3   0.0    8.7e-05   20.7   0.0    1.3  1  TIGR02945 SUF_assoc: FeS assembly SUF system protein


Domain annotation for each model (and alignments):
>> TIGR03406  FeS_long_SufT: probable FeS assembly SUF system protein SufT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   7.3e-09   1.5e-05      66     153 ..      44     131 ..      35     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 7.3e-09
   TIGR03406  66 eekaeeeekeeavweqlrtvydPeiPvnivdLGLvyevkvekleegkkkveiemtLtaPgCGmGevlvedvkkk.veavpevkevevel 153
                 e++a++ +  ++v+ ++r + dPe P+ + +L +v  ++++  +++ ++ ++  t t P C m  ++   ++ k + ++p+  +v v++
  MMETSP1174-20130828|6789_1  44 ENAARDLIDGNEVFGHIRNLNDPEHPLTLEQLNVVSVANIKV-DDQASSCDVLFTPTIPHCSMATLIGLSIRVKlIRSLPSRFKVTVKI 131
                 4455566677889********************999888877.777799*****************99999977356788877777765 PP

>> TIGR02945  SUF_assoc: FeS assembly SUF system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.2e-08   8.7e-05       4      78 ..      54     132 ..      52     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.2e-08
   TIGR02945   4 eeviealkevydPeiPvniyelGli..yeveved.dkkvkiemtltaPncPvagelPeeveea.vkeveGveevevelv 78 
                 +ev+  ++++ dPe P+ + +l ++   +++v+d ++++++ +t t P+c +a  +   ++ + +++++   +v+v+++
  MMETSP1174-20130828|6789_1  54 NEVFGHIRNLNDPEHPLTLEQLNVVsvANIKVDDqASSCDVLFTPTIPHCSMATLIGLSIRVKlIRSLPSRFKVTVKIT 132
                 578899************999998622689999856789***************9998887542788888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 888.39
//
Query:       MMETSP1174-20130828|6793_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|6795_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1174-20130828|6791_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1534.37
//
Query:       MMETSP1174-20130828|6798_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|6799_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 770.82
//
Query:       MMETSP1174-20130828|6800_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 459.52
//
Query:       MMETSP1174-20130828|6802_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.73
# Mc/sec: 484.56
//
Query:       MMETSP1174-20130828|6808_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|6806_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 1673.05
//
Query:       MMETSP1174-20130828|6812_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-11   39.3   0.1    2.2e-10   38.2   0.0    1.6  1  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   5.3e-14   2.2e-10     109     167 ..     190     249 ..     117     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 5.3e-14
   TIGR01388 109 gesv.gydklVkevleveldKsesrtDWlaRPLtdkqleYAaaDVtyLlelyekLserle 167
                 g+++ + + +V + l+ +l+K ++ + W +RPL+ kq+eYAa D   Ll+ly+++++++ 
  MMETSP1174-20130828|6812_1 190 GDQMrSLQVMVLRFLDSALNKKQQCSNWGHRPLSLKQMEYAACDALVLLRLYDAIRAEIG 249
                 444437899*********************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1269.83
//
Query:       MMETSP1174-20130828|6813_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1526.67
//
Query:       MMETSP1174-20130828|6811_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-28   94.8   0.6    1.2e-24   84.7   0.1    2.4  2  TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
    6.4e-23   79.1   0.6    3.8e-22   76.5   0.4    1.9  1  TIGR01942 pcnB: poly(A) polymerase


Domain annotation for each model (and alignments):
>> TIGR02692  tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   5.7e-28   1.2e-24      28     221 ..      42     250 ..      19     266 .. 0.75
   2 !    7.6   0.0   0.00013      0.27     414     459 ..     522     567 ..     503     573 .. 0.79

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 5.7e-28
   TIGR02692  28 helylvGGsvrdallgrlgkdldfttdarpe.evkkilreyadavwdtGiafGtvsaekd.............deqveittfrsdaydrtsrkpevefGdtleedlirrdftvnalavrvaadgslefvdplgGledll.akvldtpaapeksfsddplrmlraarfvsqlgfevaervlaalkemaeri...erisaervraeldklllge 221
                   + + GG vrd llg    d+d++ d +   +  + +r y + v  + ++   + a+ d             +  +++   r+++y   sr p++e G  +e d +rrdft+n+l  ++++    +f++   Gl+dll ++ l+tp ap+++f ddplr+lra rf+ +++f++++ +++a ++    +   e++s erv +e++ +l g 
  MMETSP1174-20130828|6811_1  42 TVVRVAGGWVRDKLLGLGNDDIDIAVDNTSGvQFANAIRAYLEEVEGMHVKISVIQANPDqskhletaclrvlNYDLDVVNLRTEKYLDGSRIPTIETGTPME-DALRRDFTMNSLFYNLNTGLVEDFTN--LGLSDLLtDRFLRTPLAPKSTFLDDPLRILRAVRFAVRFQFTIDPLIIEAAQDPDVVLalrEKVSKERVGKEFEGMLSGR 250
                 445678*******************9987542556667777776666666666665554310001000000005567788899999999**********9987.667************99985555543..48888652789***************************************9985443322379************99875 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00013
   TIGR02692 414 vrpdldGneimeildikaGpevGkaykylkelrlerGplekeeava 459
                 ++p ++G+e++++l+++ Gp vG+ ++     +l +   +kee+v+
  MMETSP1174-20130828|6811_1 522 LKPLVNGKEVIQVLELPKGPMVGRVMEAQVIWQLTHPEGTKEECVE 567
                 68999*******************9987666666665556666655 PP

>> TIGR01942  pcnB: poly(A) polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.4   1.9e-25   3.8e-22      34     238 ..      46     271 ..      30     290 .. 0.77

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.9e-25
   TIGR01942  34 ivGGavRDLllgiePKDFDvatsAtP.eevkklFrns..rivGrRFrlvHvsfg...reiiEvatFRs.g.......kkskanaegrilkdnvyGsleEDalRRDFtvnaLyYDpskeeildyag.GveDl.karrlrligdpeerykeDPvRmLRalrlaakleftidektakpire..svslLk.eisaaRlfeEilKllfsGkaaal...lkllseyklleplf 238
                 + GG vRD llg+   D D+a + t   +  +  r     + G   ++  ++     ++ +E a  R  +        ++++  +g+ +     G+  EDalRRDFt+n+L+Y+ ++  + d+++ G+ Dl   r lr+   p++ + +DP R+LRa+r+a++++ftid+ + ++ ++   v  L+ ++s+ R+  E+  + +sG+aa +   l++l++ +ll  lf
  MMETSP1174-20130828|6811_1  46 VAGGWVRDKLLGLGNDDIDIAVDNTSgVQFANAIRAYleEVEGMHVKISVIQANpdqSKHLETACLRVlNydldvvnLRTEKYLDGSRIPTIETGTPMEDALRRDFTMNSLFYNLNTGLVEDFTNlGLSDLlTDRFLRTPLAPKSTFLDDPLRILRAVRFAVRFQFTIDPLIIEAAQDpdVVLALReKVSKERVGKEFEGM-LSGRAADFptaLSRLHQMRLLPVLF 271
                 67999***************98876413444555543225789999999998642224578999999963678887755555556655555578******************************99****736899***************************************9973345556526899******9765.6899987522256666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.48
# Mc/sec: 1594.87
//
Query:       MMETSP1174-20130828|6819_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-05   18.7   0.1    0.00014   17.9   0.1    1.5  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.3e-08   0.00014     129     159 ..      21      51 .]       2      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.3e-08
   TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvea 159
                  +g +al +A++k     +klLle ga+v+a
  MMETSP1174-20130828|6819_1  21 KNGTSALFIAAEKGHTDAIKLLLEHGADVNA 51 
                 6899*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|6820_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 770.65
//
Query:       MMETSP1174-20130828|6823_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|6825_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1536.73
//
Query:       MMETSP1174-20130828|6828_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 869.31
//
Query:       MMETSP1174-20130828|6836_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 861.81
//
Query:       MMETSP1174-20130828|6832_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 2273.98
//
Query:       MMETSP1174-20130828|6837_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1153.68
//
Query:       MMETSP1174-20130828|6844_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1174-20130828|6841_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1084.79
//
Query:       MMETSP1174-20130828|6842_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-72  240.6   0.3    7.2e-72  240.1   0.2    1.2  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    9.7e-54  180.6   0.5    1.3e-53  180.2   0.3    1.1  1  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
    2.7e-28   95.2   0.0    3.6e-28   94.7   0.0    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   0.2   5.3e-75   7.2e-72       4     287 ..     190     479 ..     187     482 .. 0.95

  Alignments for each domain:
  == domain 1    score: 240.1 bits;  conditional E-value: 5.3e-75
   TIGR00128   4 alvFPGqGsqavGmgkdlle..eypiakelfdqAdeiLgydlkklvqegdaeelnktaytqPalyvvsvilyellkekgglkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeql...akvleeake.evvslanfnspeqvvisGtkkevekaeallkeagakralpLevsgafHselmkpaaeklkelleaiqfnkatvpvisnvdaeaetekdklkekLveqltspvrwtesveklaekGvtefaEvGpGkvLtGLikrik 287
                 al+ PGqG q+vGm +++le  e+ +a  lf +A++iLgydl  +v++g++e l+ t+ +qPa++v+ ++++  ++++ +++   vaG sLGEy Alv++gald ed+l+l k R+e mq+a+    g+m  v+gldee+l     + +ea+  ev+++an   p+   isG  ++ e ++ +l e+ga  +  L+ +gafH+++m++a++ l   +ea  f  +++p+ snv+ae++t  +++k+ L++q+ s+v+w++ +e++ ++G+++f+E GpGk L+ ++kri 
  MMETSP1174-20130828|6842_1 190 ALICPGQGTQTVGMARHVLEgpEAEAAMMLFSRASDILGYDLLDVVMNGPDERLQTTEVSQPAVLVTTLAALATTQDRSKIECGAVAGFSLGEYTALVVSGALDLEDTLRLLKVRAESMQKACEMTSGSMLSVVGLDEETLgleLMAAKEATGcEVLEIANYLFPKGFTISGSTEGCEWLKMNLPEKGALSVKMLNTAGAFHTSFMEQAQSDLVAAIEAAPFRVPEMPLYSNVTAEPMTTVEEIKDCLSKQMSSSVKWHQIMENMLASGTDNFLEPGPGKQLKSMMKRID 479
                 8999**************9855678999***************************************************************************************************************99322234444444799************************************************************************************************************************************96 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.3   9.8e-57   1.3e-53       2     274 ..     190     477 ..     189     481 .. 0.92

  Alignments for each domain:
  == domain 1    score: 180.2 bits;  conditional E-value: 9.8e-57
   TIGR03131   2 lllfpGQGsqragmlaelpdepkaaa...vleeasevlgadvlel...ddaealastrsaQllilaagvaaaraLkaelek.psavAGySvGelaAavvagalefedaLkLvalRaelMeqavpe.eygllavlGleeeevealvakag.......vyiAiinaedqvViaGsraalsavaeaaraaGasrakrlaVsvpSHtkllakaaeelaealaeiplaapklpvlsaiearkvrdaaallddLaqqiakpvdWhavveaiaergarlvielgPGsaLtklane 274
                 +l++pGQG q+ gm  ++ + p+a+a   ++  as++lg d+l++     +e+l+ t + Q+++l++++aa ++ +++ +    avAG+S+Ge+ A vv+gal+ ed L+L + Rae M++a++  +  +l+v+Gl+ee +   + +a+       + iA+   ++ + i+Gs ++ + ++ ++ + Ga  +k+l+ + + Ht+++++a   l +a++++p++ p++p+ s++ a+++ +++++ d L++q++  v+Wh+++e++   g++ ++e gPG+ L +++++
  MMETSP1174-20130828|6842_1 190 ALICPGQGTQTVGMARHVLEGPEAEAammLFSRASDILGYDLLDVvmnGPDERLQTTEVSQPAVLVTTLAALATTQDRSKIeCGAVAGFSLGEYTALVVSGALDLEDTLRLLKVRAESMQKACEMtSGSMLSVVGLDEETLGLELMAAKeatgcevLEIANYLFPKGFTISGSTEGCEWLKMNLPEKGALSVKMLNTAGAFHTSFMEQAQSDLVAAIEAAPFRVPEMPLYSNVTAEPMTTVEEIKDCLSKQMSSSVKWHQIMENMLASGTDNFLEPGPGKQLKSMMKR 477
                 79*************998776665541227899***********976566899**********************99999889***************************************9984566**********98644444434699**99********************************************************************************************************************************986 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   2.6e-31   3.6e-28     643     877 ..     239     476 ..     232     481 .. 0.86

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 2.6e-31
   TIGR02813 643 qeealtntayaqsaiGvlsvgqykllt.qaGfkadlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavi.lkvkksa.e.vikncikdiegvsianynsptqlviaGasaaiqlaakalkekGfkai.plpvsgafhtplvahaqkpfsaaidkakfnkpkvplysngtgklhkndakaikkalkdhilesvhfseeleaiyaaGarvfvefGpknilqklve 877
                  +e l+ t+ +q+a+ v +++  +    ++  +   vaG s+Ge +al+ +G +  +d l+l   r ++m ++  e  +G m +v+ l+ +    e   ++  +  e ++iany  p+   i+G+++  +    +l ekG   +  l  +gafht ++  aq  + aai+ a f  p +plysn t++      ++ik +l + +  sv++ + +e++ a+G+  f+e Gp   l+ +++
  MMETSP1174-20130828|6842_1 239 PDERLQTTEVSQPAVLVTTLAALATTQdRSKIECGAVAGFSLGEYTALVVSGALDLEDTLRLLKVRAESMQKA-CEMTSGSMLSVVgLDEETLGlElMAAKEATGCEVLEIANYLFPKGFTISGSTEGCEWLKMNLPEKGALSVkMLNTAGAFHTSFMEQAQSDLVAAIEAAPFRVPEMPLYSNVTAEPM-TTVEEIKDCLSKQMSSSVKWHQIMENMLASGTDNFLEPGPGKQLKSMMK 476
                 58899**********999999876544146788899**********************************765.567788888877366655431213445566788899******************************877625899**************************************976.56899***********************************988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1634.63
//
Query:       MMETSP1174-20130828|6848_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 955.60
//
Query:       MMETSP1174-20130828|6851_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.3   0.0      0.017   12.7   0.0    1.2  1  TIGR00180 parB_part: ParB-like partition proteins
      0.046   10.8   0.1       0.34    8.0   0.0    1.9  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00180  parB_part: ParB-like partition proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.2e-06     0.017      22      51 ..     216     245 ..     201     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.2e-06
   TIGR00180  22 ksfseeslaeLiesikeqgilqPilvrkap 51 
                 ++  + +l +++++i+e g+ qP +vr + 
  MMETSP1174-20130828|6851_1 216 DTEYPKDLCDFLQTIREDGLWQPTVVRDHG 245
                 356678999******************996 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00017      0.34      46      80 ..      78     112 ..      62     118 .. 0.89
   2 ?    0.4   0.0     0.034        70     114     156 ..     170     212 ..     154     217 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgaevtgiDls 80 
                  +l+gl++l++G+G G l  + a lga+vt  D++
  MMETSP1174-20130828|6851_1  78 MPLQGLRLLELGAGTGGLGLAAAVLGANVTITDQA 112
                 5799*************************998875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.034
   TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpggilflstinr 156
                 ++++Dv+   ++l   +  e++++++ +l  p+ ++++    r
  MMETSP1174-20130828|6851_1 170 HARYDVICGGDILLFTSAHEALVRTLRHLSCPNTVVLIEHTDR 212
                 4578999888999888888888888888888888888776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 988.03
//
Query:       MMETSP1174-20130828|6849_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|6853_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.7   0.0      0.018   12.7   0.0    1.1  1  TIGR02182 GRXB: glutaredoxin, GrxB family


Domain annotation for each model (and alignments):
>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.3e-06     0.018     110     140 ..       5      35 ..       1      42 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.3e-06
   TIGR02182 110 eefatqsarkyftkkkeasvgnfsallnete 140
                  +  t+sa  y+++kk + +g+++++l+  +
  MMETSP1174-20130828|6853_1   5 IDQVTRSACTYYMSKKSDAAGKLKRYLSYVK 35 
                 56789********************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 239.98
//
Query:       MMETSP1174-20130828|6854_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 895.23
//
Query:       MMETSP1174-20130828|6861_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|6858_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   10.3  18.6     0.0045   14.1   8.7    1.8  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7     0.044   1.8e+02     104     136 ..      74     105 ..      25     152 .. 0.53
   2 ?   14.1   8.7   1.1e-06    0.0045      61     213 ..     156     310 ..     130     334 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.044
   TIGR03752 104 qqaleaekkelkkekeqlkeeqakleelldelq 136
                 ++ l++ + el++++ q ++++  ++e+l+  +
  MMETSP1174-20130828|6858_1  74 KEVLQNMNPELRQKIVQSSARKS-INERLEYET 105
                 33333333333333333222111.222211111 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.1e-06
   TIGR03752  61 lrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle....dvaaekesseedlpvgl.Gleegdkaqseskdevvwvepsdakatdregkksapskesfptsf...dnalkrkkkal 213
                    l++++k+ +k++ak+e++N ++k++ ++ ++r ++  e+iq+ +++ +++l+   + lk++ ++ +e+ ++l++k+     ++ a++e+  +    +l G+ee + +q+e +++++     +a+  +++g+++++  e++ +++       +  ++++
  MMETSP1174-20130828|6858_1 156 GEELISQIKNFEKKMAKVEADNLEIKTRMDNSEARARREGEKIQDDMRTIASKLDLLVDDLKQRETHEAEDRTNLHTKMIaaekNLRASQEA--HASLAPLsGYEELKLKQEE-HESMMAQLHMEARGAQARGTAAESGMEELKQKHfaeL---EAVRAKQ 310
                 4679***************************************************9999999988855555556655554464333333333..33344556******99997.5566666666677667767767777777776663432...3322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1524.26
//
Query:       MMETSP1174-20130828|6860_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   33.0   0.0    1.3e-08   32.6   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00019   18.1   0.0    0.00025   17.7   0.0    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
  ------ inclusion threshold ------
      0.023   10.6   0.0      0.029   10.3   0.0    1.0  1  TIGR00484 EF-G: translation elongation factor G
      0.027   10.5   0.0      0.033   10.2   0.0    1.1  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.3e-11   1.3e-08       6     135 ..       3     134 ..       1     153 [. 0.75

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.3e-11
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvksl 135
                 ++++G  ++GK+ ++++l +  +++t +      +  + ++   G +   +k+n++D +G+++ ++     +  +++++ vvd ++  ++v+e+       ++  +   ++ ++++ nK+D ++      +k   +++
  MMETSP1174-20130828|6860_1   3 VLLIGPCGAGKTVIFQQLCYGGVAETVT-----SMSPAHSECTMGSKdapKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSNS-KQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGsksadRVKVLLQKE 134
                 789*****************99665555.....3333333333333335589*************999999****************.999999966566666656569**************965443333333333 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.4e-07   0.00025      50     139 ..      48     142 ..      40     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.4e-07
   TIGR00475  50 kvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLa..vlkllgikelivvl...tKaDrvdeeevkevEeelkeileeeeflk 139
                 k++++iD PGH +     l+ ++g++++++vvd+ +  +++    L+  vl    +++ + vl   +K+D   ++ +++v  +l++ le   + +
  MMETSP1174-20130828|6860_1  48 KKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSNSKQVKEASDLLfsVLTAPLLPHSTSVLvfcNKMDVEGSKSADRVKVLLQKELETMRNTR 142
                 889*******************************9998888777775236666666666555433499999999999999999998888777665 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.8e-05     0.029      75     155 ..      48     135 ..      26     144 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.8e-05
   TIGR00484  75 frinlidtPGhvdftveverslrvldGavavldavaG..vepqsetvwrqakkyevPr....ivfvnkmdkiGanfl.kvveqlksrl 155
                  +in+id PGh+     +   l    G v+v+d+     v+  s+ ++  ++   +P     +vf nkmd  G++   +v+  l++ l
  MMETSP1174-20130828|6860_1  48 KKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSNSkqVKEASDLLFSVLTAPLLPHstsvLVFCNKMDVEGSKSAdRVKVLLQKEL 135
                 79*******************************976522777788777777765555333339*********9986514444555555 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.2e-05     0.033      64     130 ..      48     120 ..      35     144 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.2e-05
   TIGR01394  64 tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtr....f.vlkka.lelglkpivvinkiDrpd 130
                  kin++D PGh          ls   gv+++vD+s+    +      f vl+   l +   ++v  nk+D + 
  MMETSP1174-20130828|6860_1  48 KKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSNSKQVKEAsdllFsVLTAPlLPHSTSVLVFCNKMDVEG 120
                 79*******************************9987543321122232333332445556666777777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      247  (0.0602145); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 586.62
//
Query:       MMETSP1174-20130828|6864_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|6866_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|6865_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.25s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1336.39
//
Query:       MMETSP1174-20130828|6867_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    4.0  35.9        2.2    3.7  24.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.3    3.5  34.7          3    3.1  24.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  24.9    0.0011       2.2     719     944 ..      16     219 ..       5     260 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0011
   TIGR02168 719 lrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleee.iesleaeieeleee..leeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelq 944
                 + +++  ++ + +++++ l+++++ +e  +   a++  + e+ +e+++e+ ++ + ++++l++ eee+e +++ +++ k++ ++  e + +l++  + +k e ++++++ e+ ++++ + eke++ +++  +++ +  +e+l++   +  ++  ++ + ++l + + ++++ e++l+++ +++ee++ e+ + e+ + +  +                          +
  MMETSP1174-20130828|6867_1  16 AAEKKAGAQAQKDKQQNALKEAQEAAEWKKGSNARKAGKDEKEREKEAEKLRAAAAKKDALAAEEEELEGVKTVVKKKKKKKSDVPEYMLALQDTKKMTKWERQQAAKKKEKEQRRKMQEEKEANAATQPRKQRDDLlVENLNHMSMDVGSAtgIDGAIDALSQETRAVKHPERRLKAAYAAYEEVQMEILREEQPNLKRSQY-------------------------K 219
                 22222222333333333333333333333333333333333333333333333344445566666666666666666666666666666666666666666666666666666666666555555555544444433033344433333322002333333333333333444455555555555554444444433333333.........................3 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  24.1    0.0015         3     694     926 ..      16     254 ..       4     261 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0015
   TIGR02169 694 lqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeiee...leeqkkeiekeieelkakleeleeeleel.eaavreLeeelkdLkker.ee..leaelrelekkkeeleaeiekkrkrlkelkak 926
                 ++++++ ++ + d+ +++l++a++  e ++    + + + ek++e+ +e+ +   + +++l++++eel+ ++  ++++++k++++ e + +l++ +++ k+e+ ++ ++k +e+++++++  +e++a+++ ++++ +ll e+ +++  ++     ++  ++++ +e  + k   + l++  + + e++++ L+ee+ +Lk+   ++   e  +r  e+  +++++e+++ +++lk l+++
  MMETSP1174-20130828|6867_1  16 AAEKKAGAQAQKDKQQNALKEAQEAAEWKKGSNARKAGKDEKEREKEAEKLRAAAAKKDALAAEEEELEGVKTVVKKKKKKKSDVPEYMLALQDTKKMTKWERQQAAKKKEKEQRRKMQEE-KEANAATQPRKQRDDLLVENLNHMSMDVGSatgIDGAIDALSQETRAVKHPERRLKAAYAAYeEVQMEILREEQPNLKRSQyKDriFEMWKRSPENPLNQAHLEYNEXKTNLKGLQVR 254
                 34455556666677777788887777777666666667777777877888888889999*******************************************9999888888877777665.7889999999999999999999988776541116678888888888888888888777665415678889999999987541331134455777888899999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       566  (0.137981); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.32s 00:00:00.70 Elapsed: 00:00:00.56
# Mc/sec: 690.59
//
Query:       MMETSP1174-20130828|6871_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|6869_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.3   1.1      0.079   11.1   0.1    2.2  3  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.9e-05     0.079      17      72 ..       4      58 ..       2      93 .. 0.81
   2 ?   -3.6   0.0      0.71   2.9e+03      65      76 ..     128     139 ..     124     144 .. 0.78
   3 ?   -2.2   0.0      0.25     1e+03      24      43 ..     170     189 ..     167     200 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.9e-05
   TIGR03142 17 vllPllrakrakatadrdelnlavYrdrLaELerdeaeglldeaeaeaakaElerr 72
                v+lP+ ++ r +a+ ++++ln  +Yr +L E  rde+ + + ++  ++a+a l+ r
  MMETSP1174-20130828|6869_1  4 VILPTGQSTRINARLANNALNALIYRRKLWEHVRDERVQKIWAK-LQQAEARLQIR 58
                7899999999999**************************99988.88887777765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.71
   TIGR03142  65 akaElerrLLad 76 
                  + E+ r+LL+ 
  MMETSP1174-20130828|6869_1 128 GRDEIVRELLDH 139
                 578999999986 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.25
   TIGR03142  24 akrakatadrdelnlavYrd 43 
                 ++++++ +dr+e+ +a Y +
  MMETSP1174-20130828|6869_1 170 KRKRRTLTDRTEASVAAYTN 189
                 44445778888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1134.28
//
Query:       MMETSP1174-20130828|6875_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.20s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|6873_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|6872_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-25   88.0   0.0    8.1e-18   62.7   0.0    2.0  2  TIGR03614 RutB: pyrimidine utilization protein B


Domain annotation for each model (and alignments):
>> TIGR03614  RutB: pyrimidine utilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.9e-09   7.9e-06      14      68 ..      38      92 ..      33     110 .. 0.88
   2 !   62.7   0.0     2e-21   8.1e-18     103     217 ..     116     230 ..     112     233 .] 0.89

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.9e-09
   TIGR03614 14 eetalivvdmqnayatkggyldlagfdvsaakkvienikkaveaaraagikviyf 68
                ++tal+++++qn ++t+gg +  a   v ++++v+ + + +++ ar ag+k+++ 
  MMETSP1174-20130828|6872_1 38 SKTALVLIEFQNEFTTEGGKMYDAVKAVQETNDVLGKTASVMAKARGAGVKIMHS 92
                689************************************************9875 PP

  == domain 2    score: 62.7 bits;  conditional E-value: 2e-21
   TIGR03614 103 qgkllakgtwdyelvdeltpqpgdivle.ktrysgffntaldsvlrargirnlvfvgiatnvcvestlrdgffleyfgvvledathqagpkflqkaalynietffgwvsdvedfkd 217
                 +g+l++ gtw+ e+ d+++p  gdi+++ k     f  t+l+  lr  gi ++v++g  tn cvest+r ++ l +  + l+d t  + p+  q aa      ff    ++++f++
  MMETSP1174-20130828|6872_1 116 DGQLFTEGTWNAEICDAVKPADGDIIIQgKKGLDAFPGTDLEHQLRENGIETIVLAGYLTNCCVESTMRTAYELGFNVITLKDCTATTTPEG-QTAATEGTYGFFSTPMTAAEFEA 230
                 689***********************98466789999*************************************************999975.66777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1025.12
//
Query:       MMETSP1174-20130828|6868_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 2082.95
//
Query:       MMETSP1174-20130828|6880_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-21   71.8   0.0    1.3e-20   71.3   0.0    1.1  1  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein


Domain annotation for each model (and alignments):
>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   3.3e-24   1.3e-20      84     195 ..      23     139 ..      10     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 3.3e-24
   TIGR00057  84 kkflpGpltlvlkkkkeiprlvskkrktvaiRvPdeeialelleelgkPivatSanlsgkesateveeivkeldkkvdliidage...vkkgeestvvdlteke.pkvlReGkvs.e 195
                 + f+pG  t+v ++k+++p++v  +  tv++RvP++++al+ll++ g P++a+Sanl g+ s+t++ ++  +l ++  ++++++e      g estv ++       vlR G+vs +
  MMETSP1174-20130828|6880_1  23 RSFWPGGVTIVAPAKPHVPEFVCANSSTVGVRVPSHPVALKLLQSAGVPVAAPSANLFGHVSPTTASHVLADLSGEDIAVLKGQEdetGDLGIESTVCKISGGGsLEVLRLGAVSvR 139
                 689**********************************************************************98877788876644345689*******9875599*******744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1695.55
//
Query:       MMETSP1174-20130828|6883_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 581.73
//
Query:       MMETSP1174-20130828|6886_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|6887_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-06   25.0   0.0    3.2e-06   24.6   0.0    1.1  1  TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
    7.7e-05   19.5   0.0     0.0001   19.1   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    8.1e-05   20.0   0.0     0.0001   19.6   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0003   18.9   0.0    0.00047   18.3   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00063   17.1   0.0     0.0009   16.6   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00086   16.5   0.0     0.0013   15.9   0.0    1.2  1  TIGR01177 TIGR01177: TIGR01177 family protein
     0.0039   14.1   0.0     0.0057   13.6   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.013   13.1   0.0      0.018   12.5   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
      0.014   12.5   0.0      0.021   11.9   0.0    1.2  1  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase


Domain annotation for each model (and alignments):
>> TIGR00308  TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.1e-09   3.2e-06      47     110 ..      32      95 ..       7     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 7.1e-09
   TIGR00308  47 eildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsven..ievineDaaavlrk 110
                  ++d +++ G  ai  a   ++   v+anD+nP++ +++k+n++ n+v +    v+n Da+ ++ +
  MMETSP1174-20130828|6887_1  32 LVADMFAGVGPFAIPSAL--HHNATVFANDLNPESARALKENAERNKVPDkrLTVSNMDASEFVAS 95 
                 578999999999998875..5779************************75226799*****99876 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-07    0.0001     289     352 ..      25      89 ..      12     124 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.3e-07
   TIGR00479 289 lelqgeekvvDaycGvGtftlplA.kqaksvvgvevvkesvekakrnAelngianveflagelee 352
                  ++++ ++v D+++GvG f++p A ++ + v + + ++es    k nAe+n++ +   ++ +++ 
  MMETSP1174-20130828|6887_1  25 KQIKPGQLVADMFAGVGPFAIPSAlHHNATVFANDLNPESARALKENAERNKVPDKRLTVSNMDA 89 
                 47889999**************9944567899*******************99877666665553 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07    0.0001     158     216 ..      28      86 ..      16     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.3e-07
   TIGR00406 158 lkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                 ++++ v+D+ +G G  +i  ++   a v+a D++p + ++ ++N+e+N+v+d+   + +
  MMETSP1174-20130828|6887_1  28 KPGQLVADMFAGVGPFAIPSALHHNATVFANDLNPESARALKENAERNKVPDKRLTVSN 86 
                 45699**********************************************98776655 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     1e-06   0.00047      16      78 ..      26      87 ..      20     112 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1e-06
   TIGR02469 16 rlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegda 78
                ++k+g+ + D  aG G  +i  a  + +  v+a + n+e+++ ++eN++r++v ++++  +++
  MMETSP1174-20130828|6887_1 26 QIKPGQLVADMFAGVGPFAIPSALHH-NATVFANDLNPESARALKENAERNKVPDKRLTVSNM 87
                578899**************977655.5699**********************9999876644 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06    0.0009      80     163 ..      23     112 ..      20     116 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-06
   TIGR03534  80 aleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke..veflksdl...leal....eekgkfdlivsN 163
                 +l+++k  +   v+D+ +G G  a+  a +  +a+v+a D+++e+++  ++Na+r+++ +  +++ + d    +++l     ++ + d ++ N
  MMETSP1174-20130828|6887_1  23 VLKQIKPGQ--LVADMFAGVGPFAIPSALH-HNATVFANDLNPESARALKENAERNKVPDkrLTVSNMDAsefVASLvrahGPDWRPDHVIMN 112
                 788888888..9*********999987777.78*************************99663333333322233334433445556666666 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06    0.0013     177     242 ..      24      92 ..      22      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.9e-06
   TIGR01177 177 larvkegdrvlDPfcGTGgilIEAgLl.GikviglDidekmveGariNLehYgied..fkvkrldakkl 242
                 l ++k+g+ v+D f G G ++I  +L   + v ++D++ + ++  ++N e+ +++d   +v+++da++ 
  MMETSP1174-20130828|6887_1  24 LKQIKPGQLVADMFAGVGPFAIPSALHhNATVFANDLNPESARALKENAERNKVPDkrLTVSNMDASEF 92 
                 5689*********************97368999***********************999*******875 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.3e-05    0.0057     109     165 ..      24      79 ..      14      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   TIGR00536 109 lisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklklee 165
                 l + +p + + D++ G G  a+  Al+ + a+v a D+ ++     +eNae++k+ +
  MMETSP1174-20130828|6887_1  24 LKQIKPGQLVADMFAGVGPFAIPSALHHN-ATVFANDLNPESARALKENAERNKVPD 79 
                 55556668899************999876.************************976 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     4e-05     0.018      15      66 ..      24      77 ..      19      96 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-05
   TIGR00537 15 lrelkndd.vleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnv 66
                l+++k+ + v ++ aG G  ai  +   + ++ a d+nP +++ lkena  n+v
  MMETSP1174-20130828|6887_1 24 LKQIKPGQlVADMFAGVGPFAIPSALHHNaTVFANDLNPESARALKENAERNKV 77
                7788888878899999998888766554448******************88765 PP

>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.5e-05     0.021      69     140 ..      27      98 ..      22     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.5e-05
   TIGR00446  69 peekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvln..vavinvDgRkfgavvlk 140
                  ++ + v D+ a  G     i   l+ + +++an+++ +  ++L++n +R  v     +v n+D+ +f a + +
  MMETSP1174-20130828|6887_1  27 IKPGQLVADMFAGVGP--FAIPSALHHNATVFANDLNPESARALKENAERNKVPDkrLTVSNMDASEFVASLVR 98 
                 5688899999997775..56888999999*********************999651156778999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 928.48
//
Query:       MMETSP1174-20130828|6888_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   17.3   0.0       0.11    8.4   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   3.2e-05      0.13     130     151 ..       9      30 ..       3      43 .. 0.79
   2 !    8.4   0.0   2.6e-05      0.11     126     150 ..      40      64 ..      32      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 3.2e-05
   TIGR00870 130 kgitalilAihkqnyeivklLl 151
                  g t+l +A++k n+ +v+ L 
  MMETSP1174-20130828|6888_1   9 IGCTPLFIAAEKGNLDVVRCLA 30 
                 589****************996 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 2.6e-05
   TIGR00870 126 seftkgitalilAihkqnyeivklL 150
                  +  +g t+l +A++k+n+ +v+ L
  MMETSP1174-20130828|6888_1  40 AKTDNGVTPLFMAAQKDNLDVVRYL 64 
                 566789****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|6884_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1399.08
//
Query:       MMETSP1174-20130828|6890_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1174-20130828|6885_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1350.95
//
Query:       MMETSP1174-20130828|6894_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1174-20130828|6893_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   17.4   0.0     0.0018   15.9   0.0    1.6  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-07    0.0018      29     134 ..      75     173 ..      67     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.5e-07
   TIGR03137  29 lkGkwsvlvfypadftfvcpteledladkyeelkelgvevysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvlieeaglaergtfvidpeGvikvv 134
                 +  k +vl fy ad +  c  + + ++ +  e+k+lgvev  v  +    +  ++d           ++ d+  ++  ++++ ++   l  r t+v+d  G++ +v
  MMETSP1174-20130828|6893_1  75 VSKKAAVLYFYGADQAPSCTKQASAFDSSLGEFKSLGVEVVGVRNEKGV-KGDFAD------SYAQRFVVDEGDAVRDEIGIPKDLFVLGGRETYVVDKAGTVAMV 173
                 667899***********************************99877543.222333......23346788889999999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 866.18
//
Query:       MMETSP1174-20130828|6895_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    6.3  15.7       0.35    6.3  10.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        0.5    5.7  14.8       0.55    5.6  10.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        2.2    6.1   8.4       0.44    8.4   0.4    2.4  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  10.9   0.00025      0.35     721     841 ..      11     131 ..       1     139 [] 0.30

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00025
   TIGR02168 721 keleelerklselkkele.rlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaaleke 841
                 +++ +le+  ++++ ele rl k v ++e+ ++ +  e  +l+++ + +e +le ++  +  ++++ ++le+ei++l++++++l+e+ +e ++ ++ l +++++ ++++++  + +++++k+
  MMETSP1174-20130828|6895_1  11 ARELKLEETARARELELElRLDKAVSRHEQAASVAAMESVRLTDKLRDTEGKLETERRVAYSQRAKATKLENEIRELSASVATLEETTTEPKSLIRLLASAVRK-RTAASRAGRAVKKVAKR 131
                 11222222222222222112333333333333333333333333333333333333333333333333333333333333333333333333333333333332.22222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  10.3    0.0004      0.55     400     518 ..      12     130 ..       1     136 [. 0.79

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0004
   TIGR02169 400 eelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlk 518
                 +el+  ++ + r le   rl++++++++++   +  +   l ++l + + +++++++ + + +++  k+e+e+r+l++ ++ le+  +e ++ +  l    +    +sr ++av++v k
  MMETSP1174-20130828|6895_1  12 RELKLEETARARELELELRLDKAVSRHEQAASVAAMESVRLTDKLRDTEGKLETERRVAYSQRAKATKLENEIRELSASVATLEETTTEPKSLIRLLASAVRKRTAASRAGRAVKKVAK 130
                 3333334456788889999999999999999999999999************999999999999999********99999999999888887766666666666666777777777755 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.3     0.049        67      49      75 ..       2      27 ..       1      36 [. 0.80
   2 ?    8.4   0.4   0.00032      0.44      14      59 ..      44      89 ..      41      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.049
   TIGR02209 49 dLqlEvaelsrheRiekiAkkqLgmkl 75
                +L+lE+++ +r   +e+ A+   +++l
  MMETSP1174-20130828|6895_1  2 ELELEETARARELKLEETARAR-ELEL 27
                7999999999999999999976.5554 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00032
   TIGR02209 14 vsaisvvsvqhqtrqlnselqklqaeieklqkewndLqlEvaelsr 59
                v a+  v  + ++r++  +l++  +   ++ ++ ++L+ E+ els 
  MMETSP1174-20130828|6895_1 44 VAAMESVRLTDKLRDTEGKLETERRVAYSQRAKATKLENEIRELSA 89
                6788899999999999999999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 573.33
//
Query:       MMETSP1174-20130828|6896_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 1587.25
//
Query:       MMETSP1174-20130828|6897_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                      241  (0.0587518); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 313.92
//
Query:       MMETSP1174-20130828|6899_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1398.37
//
Query:       MMETSP1174-20130828|6901_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|6900_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1398.26
//
Query:       MMETSP1174-20130828|6905_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|6907_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|6908_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 583.69
//
Query:       MMETSP1174-20130828|6914_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|6919_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 357.65
//
Query:       MMETSP1174-20130828|6920_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|6918_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|6926_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 239.54
//
Query:       MMETSP1174-20130828|6928_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.2   0.0     0.0014   15.1   0.0    1.0  1  TIGR04007 wcaI: colanic acid biosynthesis glycosyl transferase WcaI


Domain annotation for each model (and alignments):
>> TIGR04007  wcaI: colanic acid biosynthesis glycosyl transferase WcaI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-07    0.0014     309     336 ..       7      34 ..       3      43 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.5e-07
   TIGR04007 309 lvvqkrgaadavlpskltnilavggnav 336
                 +v    g +davl    tn+lavggn+ 
  MMETSP1174-20130828|6928_1   7 IVSTSGGDSDAVLSFSTTNVLAVGGNSC 34 
                 55667799******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1174-20130828|6924_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|6932_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|6934_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|6935_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.9   0.1      0.034   11.8   0.1    1.2  1  TIGR00985 3a0801s04tom: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00985  3a0801s04tom: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.3e-06     0.034      29      57 ..      32      60 ..      27      67 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.3e-06
   TIGR00985 29 ykRrndPefrkklrrrakkqakaekqeee 57
                ++R+ +P++r++lr+  +  + ++  e++
  MMETSP1174-20130828|6935_1 32 RQRKVSPKYRRTLRQADRDSNLTQPGEAG 60
                79*************99988766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 260.10
//
Query:       MMETSP1174-20130828|6929_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1035.61
//
Query:       MMETSP1174-20130828|6936_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-32  111.0   0.1    1.1e-32  110.9   0.0    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   2.7e-36   1.1e-32     374     442 ..       1      70 [.       1      84 [. 0.90

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 2.7e-36
   TIGR00811 374 iawqlvasafpiaflsnpvvyivlrivllieatgicagawflgmihkkvagfqldevyvgtaee.raage 442
                 iawqlva afpiaflsnp+v i lri l ieatgicagawfl  ihk+++gfq devyvgt ee raa e
  MMETSP1174-20130828|6936_1   1 IAWQLVAGAFPIAFLSNPMVLIFLRIALAIEATGICAGAWFLARIHKNISGFQFDEVYVGTPEEqRAASE 70 
                 8************************************************************988356554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|6930_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   18.5   1.0      0.028   12.3   0.2    2.6  2  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   6.9e-06     0.028      14      29 ..      88     103 ..      84     115 .. 0.84
   2 !    4.2   0.0    0.0023       9.6      38      49 ..     138     149 ..     130     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.9e-06
   TIGR00012  14 lkelKkeLfeLRfqka 29 
                 +++lK+eLf++R+q +
  MMETSP1174-20130828|6930_1  88 IHQLKRELFRMRAQVK 103
                 89***********965 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0023
   TIGR00012  38 rIrqvRrdIARl 49 
                  Ir+ Rr IA++
  MMETSP1174-20130828|6930_1 138 HIRHSRRKIAKM 149
                 59********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|6940_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   10.3   0.1       0.69    5.7   0.0    2.5  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0   0.00017      0.69     127     154 ..      67      94 ..      60     128 .. 0.87
   2 ?    0.8   0.0    0.0052        21     127     154 ..     130     157 ..     116     162 .. 0.82
   3 ?   -0.6   0.0     0.013        54     125     152 ..     163     190 ..     159     195 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00017
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekg 154
                 +   g t+l+lA   +n+  ++lLl+ +
  MMETSP1174-20130828|6940_1  67 SDRSGNTPLMLASAANNLGALRLLLDVK 94 
                 55689********************966 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0052
   TIGR00870 127 eftkgitalilAihkqnyeivklLlekg 154
                 +   g +al lA+     e+v +L+e g
  MMETSP1174-20130828|6940_1 130 RNLDGLSALDLAAASGHHEVVAALVEEG 157
                 55679999****************9987 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.013
   TIGR00870 125 tseftkgitalilAihkqnyeivklLle 152
                   +   g  al+lA++     +++lLl+
  MMETSP1174-20130828|6940_1 163 GRSLKTGRMALHLAAQGGHTRVLSLLLD 190
                 567788999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1480.75
//
Query:       MMETSP1174-20130828|6950_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1174-20130828|6952_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1174-20130828|6949_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-25   86.4   5.0      5e-25   86.0   3.5    1.0  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   3.5   1.2e-28     5e-25     239     447 ..      66     267 ..      61     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 86.0 bits;  conditional E-value: 1.2e-28
   TIGR00400 239 vGivtvddiidvve.eeatediyekaavkskddsyldtsllvvakkrvvWLlvLlvsstltasiissyedvlkkvvaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqgdllvafvvassLfvsllvaklaGgllPivlkklkldPalmsgPlittladvlslliylniakall 447
                 vGi  +dd+ +v    e  edi + a  +++     +     + + rv WL+ Ll ++ +++ ++ss  +++ +   + +f+ +l++a+GnaG q++  +irgLa+e +   +  + + re++++  +  ++a+  av++  + +    ++ ++ sL++++ +a +aG+ lP+v++ +  dPa +s+  i  + d+ ++++  ++ + ++
  MMETSP1174-20130828|6949_1  66 VGI--IDDV-EVGDwCELPEDITQEAVCEPET----KEDFALALRSRVTWLIGLLAAQSMSSFVLSSNMELIDRYPSIVFFLTMLVGAGGNAGNQAAVRIIRGLATESITPSTKWQFLGREVKMAFCISFLVAIAGAVRVTTFGTARIETLALTVSLYLIVFIAIIAGAALPLVMEAIGFDPAHAST-TIQVVMDITGVILVCLVTRFVV 267
                 554..4554.3333146678887777777774....4445667899**********************************************************************************************9998887778888889***************************9887.68999******99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1200.68
//
Query:       MMETSP1174-20130828|6958_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 764.44
//
Query:       MMETSP1174-20130828|6956_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|6959_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|6964_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|6962_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-56  185.9   2.4    6.6e-56  185.7   1.7    1.0  1  TIGR00982 S23_S12_E_A: ribosomal protein S23 (S12)
    9.2e-13   46.0   0.6    1.1e-12   45.8   0.5    1.2  1  TIGR00981 rpsL_bact: ribosomal protein S12


Domain annotation for each model (and alignments):
>> TIGR00982  S23_S12_E_A: ribosomal protein S23 (S12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   1.7   3.2e-59   6.6e-56       1     138 [.       8     144 ..       8     145 .] 0.98

  Alignments for each domain:
  == domain 1    score: 185.7 bits;  conditional E-value: 3.2e-59
   TIGR00982   1 glfaarklkekrkkfrwsdrrykrrvlrlkekadplegapqargivlekvgveakqpnsalrkavrvqlikngkvvtafvpgdgainfidehdevivegiggpkgrsmgdipgvrykvvkvnnvslkelvkgkkekpr 138
                 g+ a+rkl+ +r+k rw ++ y++     + ka+p+ ga +a+givlek+g+eakqpnsa+rk+vrvqlikngk+++afvp+dg++nf+de dev++ g g ++g+++gdipgvr+kvvkv +vsl +l+k kkekpr
  MMETSP1174-20130828|6962_1   8 GIRAGRKLRVHRRKQRWANKAYNKSHSVTAMKANPFGGACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFG-RRGHAVGDIPGVRFKVVKVAGVSLIALYKEKKEKPR 144
                 5679***********************************************************************************************85.89********************************97 PP

>> TIGR00981  rpsL_bact: ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.5   5.3e-16   1.1e-12      17     102 ..      31     129 ..       9     145 .] 0.72

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 5.3e-16
   TIGR00981  17 kkskspalek.....sPqkrGvctrvktvtPkkPnsalrkvarvrl.tngvevtayipGeg..hnlqehsvvlv.....rGGrvkdlPgvryhivrGal 102
                 k   ++a+++     + + +G+++    +  k+Pnsa+rk +rv+l  ng +++a++p +g    ++e + vl+     rG  v d+Pgvr+++v+ a 
  MMETSP1174-20130828|6962_1  31 KSHSVTAMKAnpfggACMAKGIVLEKIGIEAKQPNSAIRKCVRVQLiKNGKKIAAFVPRDGclNFVDENDEVLIagfgrRGHAVGDIPGVRFKVVKVAG 129
                 22222344444444466789*************************84699********877325699******95555455679***********9663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 562.89
//
Query:       MMETSP1174-20130828|6967_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-20   69.9   0.0    1.2e-12   45.3   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.6e-09   1.1e-05      23     125 ..       2     119 ..       1     123 [. 0.68
   2 !   45.3   0.0   2.9e-16   1.2e-12     128     305 ..     143     317 ..     134     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.6e-09
   TIGR01293  23 vfgsqisdeqaedllklaye.sginlfdiaevyaa.......gkaetelgkilkkkgwrrssyvittki.......fwggka..eeerglsrkhiieglkaslerlqleyvdivlanrad 125
                 +fg q + e+  + l+ a++  gin++d+ae+y +       g+++  +   l  k  +r  +v++tk+        w  ++  ++   l++  i +++ asl+rl ++y+d++ ++ +d
  MMETSP1174-20130828|6967_1   2 TFGKQNTLEEGVEQLNEAFDtYGINFLDTAEMYPVptdaetqGRTDEAVAMFL--KNRKREDVVLATKVsgradriTWLPRRlpNTPASLTKEQIFDSVDASLKRLGVDYIDLLQLHWPD 119
                 7888877666655666666626**********975211111133334444444..5679********972222222465443336778999**********************9999887 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 2.9e-16
   TIGR01293 128 spmeevvramtyvinqglalywgtsrwsaveimeaysvarqf.nlippive.qaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvll 305
                   +ee + a   +++ g   y g s  +   +    s a+ f +l p iv  q  y l  r+  e  l e   +  v ++ +spla +  ++ky ++  ++++ +   +    +      g ++ a ++    lae+   t++qla++w+ ++e v s ++ga++ eql e+l++ +v+l
  MMETSP1174-20130828|6967_1 143 VQFEEQLAACQELVKAGKVRYIGVSNETPYGVCSMASLAKMFpDLYPKIVSiQNSYSLVVRKDYEAGLAEACYHHKVASLPYSPLAGGSLTGKYRSGPIEGARLS--LFPGFMD---RYMGSQNEAAVNAYCELAEESELTPSQLALSWCYHNELVCSTIIGATTMEQLGENLKAYDVRL 317
                 446899999999****************************994566667644999***************999999********************977777777..3444444...456889999************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1180.96
//
Query:       MMETSP1174-20130828|6968_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 317.60
//
Query:       MMETSP1174-20130828|6969_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 648.30
//
Query:       MMETSP1174-20130828|6974_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|6977_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      238  (0.0580205); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|6971_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-188  624.2   0.0   1.7e-188  624.0   0.0    1.0  1  TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit
      1e-10   38.5   0.0    2.8e-10   37.1   0.0    1.6  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit


Domain annotation for each model (and alignments):
>> TIGR01959  nuoF_fam: NADH oxidoreductase (quinone), F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  624.0   0.0  8.1e-192  1.7e-188       2     409 ..      56     464 ..      55     465 .. 0.99

  Alignments for each domain:
  == domain 1    score: 624.0 bits;  conditional E-value: 8.1e-192
   TIGR01959   2 llkkleekesvtleeyekkggykalkkaleelspddiieevkesglrGrGGaGfptGlkWsfipkde.akpkylvvnadesePgtfkdrdlleaePhklieGliiaayalkakkgyiyirGefvkeakaleaaideayaagllGknilgsgfdlelvvheGaGayiCGeetallesleGkkgqPrlkPPfPavvGlygkPtvvnnvetlasvPailrkGaewykklgkeksaGtklfslsGkvkkpglyelplgitlkelledyagGvrdgkk.lkaviPGGssvpvltaeevldvemdydslakagsrlGtaavivldesvdivklvarlsefykkesCGqCtPCreGtgWlvkilerleegegkkedidkleslskelegktiCalgdaavepvqsaikkfrdefeak 409
                 ++++++ ++++ l+ +e +g+++++k ++ +  pd++++e+k+sglrGrGGaGfp+GlkWsf+pk++  +p +lvvnadesePgt+kdr++++++Phkl+eG+++a+ya++a+++yiyirGe+++ea  +++ai+eayaag+lGkn +gsg+d++l++h+GaGay+CGeetal+esleGk+g+PrlkPPfPa+vG++g+Pt+v nvet+a+ P+i r+Ga+w+  +g+++++Gtklf++sG+v++p ++e++++i+l++l+e+++gGvr+g++ l+aviPGGssvpv++ e+  ++ md+d l+++gs lGtaav v+d+svd+v +++rl++fy++esCGqCtPCreGtgWl +il ++e+geg  ++i +le++++++eg+tiCalgdaa++pvq++ik+f+ e+e++
  MMETSP1174-20130828|6971_1  56 IFTNIYGEQDWRLKDAEMRGDWHRTKDIMWM-GPDWMVQEIKDSGLRGRGGAGFPSGLKWSFMPKNTdGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAAYIYIRGEYFNEAVVMDEAIHEAYAAGYLGKNACGSGYDFDLYLHRGAGAYVCGEETALIESLEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTIFRRGASWFGGMGRKNNSGTKLFGISGHVNNPIVVEEEMSISLQDLIEKHCGGVRGGWNnLQAVIPGGSSVPVMNFEQSSEALMDFDDLKAHGSALGTAAVTVFDKSVDMVGAIRRLAHFYRHESCGQCTPCREGTGWLEDILIKMEKGEGDIREIPMLEEITRQIEGHTICALGDAAAWPVQGLIKQFKPELEQR 464
                 7899************************965.**********************************989***********************************************************************************************************************************************************************************************************99*************************************************************************************************************************************987 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.4e-13   2.8e-10     112     209 ..      79     179 ..      66     198 .. 0.82
   2 ?   -2.8   0.0      0.18   3.7e+02     409     425 ..     216     232 ..     206     266 .. 0.59

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.4e-13
   TIGR01945 112 alkkeeklskeeilekikaaGivGlGGAtFPthvklnskpek...kvelliingaeCePyltaDdrlmreraeeileGikillkilkvkkvvigiednkpe 209
                  +k+   + ++ ++++ik+ G+ G GGA FP+  k +  p++   + + l++n+ e eP    D  +mr+ +++++eG  +  ++++ + ++i i  +  +
  MMETSP1174-20130828|6971_1  79 RTKDIMWMGPDWMVQEIKDSGLRGRGGAGFPSGLKWSFMPKNtdgRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAAYIYIRGEYFN 179
                 5556666778889**********************99877652225789****************************************999999776554 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.18
   TIGR01945 409 sCayvCPskiplveyir 425
                 + ayvC  +  l+e++ 
  MMETSP1174-20130828|6971_1 216 AGAYVCGEETALIESLE 232
                 55555555555555442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 1911.96
//
Query:       MMETSP1174-20130828|6980_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.1   0.1     0.0004   17.7   0.1    1.6  1  TIGR02017 hutG_amidohyd: N-formylglutamate deformylase


Domain annotation for each model (and alignments):
>> TIGR02017  hutG_amidohyd: N-formylglutamate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   9.8e-08    0.0004      17     128 ..      54     157 ..      42     194 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.8e-08
   TIGR02017  17 PhtGtdltdavesrlvsaakalkdtdW.hieklydfard....lGatvvraaisrlvidvnrdpsgaslypgqattgliPettfdgeplykdGeaPseaeikkrltkyfkPyhaalr 128
                  h+   +++  +   ++a+  +kd  W +    +dfa +    lG++vv a++srl  dvnr+ s a+++ +          + dg pl ++ +  s+++++ rl ky+ Pyh +l 
  MMETSP1174-20130828|6980_1  54 EHASNAIPKPYAWDSSDAW--VKDKHWaWDPGSHDFAVEcgrlLGSAVVSAKFSRLLCDVNRPISSATIFRA----------ECDGIPL-EMNRDLSDHDREWRLWKYYLPYHMQLG 157
                 5555555554444444444..4666663445678888763333689*******************9999988..........5677776.566678899999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1119.91
//
Query:       MMETSP1174-20130828|6979_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.3   3.9     0.0033   14.0   2.7    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.7     8e-07    0.0033     185     269 ..     137     223 ..      44     243 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8e-07
   TIGR01651 185 afarvvrellaslelaeelgdd...eesedeedtdddqpredeqeeegeeeeegd..easaaeeaeaaeeeeesgeeeaaeaddddlsde 269
                  f  +  ++l     a+el+d    + se+ +d+ dd    +e++  g e + ++  ++ +++++ a+++++  g e++++++d   ++e
  MMETSP1174-20130828|6979_1 137 GFGPLAMKIL---GAADELCDYynyTSSEETDDETDDGSATNEDSSTGTEHQIQSanKNEDTDDESATNKDSSTGTEHQSQSKDSPNKKE 223
                 3444444444...44555555522255555555556666667777777666554411344556667777777777777777666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1238.99
//
Query:       MMETSP1174-20130828|6985_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 836.87
//
Query:       MMETSP1174-20130828|6988_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1174-20130828|6983_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-10   37.3   0.0    8.3e-05   19.8   0.0    2.2  2  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     2e-08   8.3e-05      76     173 ..      25     122 ..      19     126 .. 0.80
   2 !   15.4   0.0   4.7e-07    0.0019     122     155 ..     238     271 ..     230     286 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2e-08
   TIGR03516  76 kkkdttetktpe.tgDlvsfeyeikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtll 173
                 +  +t+++  pe t D  + +y+ k +dg+v  s  + g    +    ++i G  ++l lm+ g++ ++ +Ps  ayG  G   ki    ++  ++ l 
  MMETSP1174-20130828|6983_1  25 EVLQTGQGAKPEsTSDSCTCHYTGKLIDGTVFDSSVQRGKP-ATFSPSGVIGGWTEALMLMRPGDKWILSIPSDLAYGDRGSGSKIPGGSALLFELELI 122
                 55566666666536799999999999999998888887754.4567899*************************************8777777666665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.7e-07
   TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyG 155
                 +++i+G  ++++lm eg++  +++Ps  ayG  G
  MMETSP1174-20130828|6983_1 238 NQVIKGWTEAMQLMVEGDKWEMYIPSNLAYGDNG 271
                 6899*************************99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1174-20130828|6991_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|6989_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.5   1.1    0.00025   18.8   0.7    1.3  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.7     6e-08   0.00025      36     103 ..     134     204 ..     120     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6e-08
   TIGR01144  36 asaekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikk...eAeeerekilakaeaeieae 103
                 as e+++kel   +k+++++l++a+ ++a+ii + ++r++ ++e +          ++ki ++++ ++  +
  MMETSP1174-20130828|6989_1 134 ASPEESEKELRRKKKETEKELQQARVRSAKIIRDWKERRKTVEEAAVPvppMHSPTSTKISKSSKSDVSSK 204
                 57799*************************************99886511134455677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 826.67
//
Query:       MMETSP1174-20130828|6995_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|6997_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 153.39
//
Query:       MMETSP1174-20130828|6998_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|6999_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|7001_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 556.24
//
Query:       MMETSP1174-20130828|7004_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-40  132.1   0.0    2.8e-09   34.5   0.0    5.0  5  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0011   15.0   0.0     0.0015   14.6   0.0    1.2  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.1e-10   2.3e-07       1      33 [.      13      45 ..      13      47 .. 0.95
   2 !   33.6   0.0   2.5e-12   5.1e-09       2      35 .]      49      82 ..      48      82 .. 0.97
   3 !   25.1   0.0   1.3e-09   2.6e-06       1      35 []      83     117 ..      83     117 .. 0.95
   4 !   34.5   0.0   1.3e-12   2.8e-09       1      35 []     118     152 ..     118     152 .. 0.97
   5 !    4.5   0.0    0.0045       9.3       1      17 [.     153     169 .]     153     169 .] 0.93

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.1e-10
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivP 33
                ++yn+ i  +++a+r++ Al+l+ +M++rgi+ 
  MMETSP1174-20130828|7004_1 13 YMYNAAIGVCGRAKRWDRALQLLARMEARGIEL 45
                68****************************985 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 2.5e-12
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                +y++ i +++++g++e A+ lf+ M++rg++P++
  MMETSP1174-20130828|7004_1 49 SYSAAITACGRSGKWERAVTLFQTMQKRGVEPNV 82
                8*******************************96 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 1.3e-09
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 vt+++ is+++k +++ +Al+l+deM  +g+ P++
  MMETSP1174-20130828|7004_1  83 VTFTATISACAKGCQYVKALDLLDEMTHKGVMPNV 117
                 799999*************************9996 PP

  == domain 4    score: 34.5 bits;  conditional E-value: 1.3e-12
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++n+ is++ kag++e+Alel+ +M+ +g++Pd+
  MMETSP1174-20130828|7004_1 118 FSFNAAISACEKAGKWEKALELLGKMRQAGFEPDV 152
                 58*******************************96 PP

  == domain 5    score: 4.5 bits;  conditional E-value: 0.0045
   TIGR00756   1 vtyntlisglckagrve 17 
                 +++n+ is++ k g++e
  MMETSP1174-20130828|7004_1 153 ISFNAAISACEKGGKWE 169
                 58************997 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.5e-07    0.0015      45     151 ..       4     113 ..       2     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.5e-07
   TIGR03939  45 lyrktkldkkvldDllavlsWagedkevidvyeryslvglp..arelealAkAaRnekqwdkAlelyrkllqrdPknpdll..lGlaltladagkdeeAlkalkelkerfp 151
                 l r++ +d  +++  + v ++a + ++++++ +r++ +g+     ++ a++ A+ ++++w+ A++l++ +++r   +p++   ++ + + a   ++ +Al+ l+e+ ++  
  MMETSP1174-20130828|7004_1   4 LERQSIADAYMYNAAIGVCGRAKRWDRALQLLARMEARGIElgPWSYSAAITACGRSGKWERAVTLFQTMQKRG-VEPNVVtfTATISACAKGCQYVKALDLLDEMTHKGV 113
                 56777778888899999******************8887651166888999******************99997.556655015555566666699999999999987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 656.06
//
Query:       MMETSP1174-20130828|7006_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1315.77
//
Query:       MMETSP1174-20130828|7014_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|7011_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1291.89
//
Query:       MMETSP1174-20130828|7017_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 783.94
//
Query:       MMETSP1174-20130828|7016_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083   11.5   5.4       0.19   10.4   3.8    1.5  1  TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM


Domain annotation for each model (and alignments):
>> TIGR03824  FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.8   4.7e-05      0.19      10      78 ..     115     180 ..     110     187 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.7e-05
   TIGR03824  10 aavaalsqtksksaakansaaakaaasavesdsvslssqaqqlqsleaqlasapdvdaakVeeikaaIa 78 
                 ++++a++++k+   +k++s++ +++ s+++s  v++ ++a +l+s  +ql++++ v+++ V ++k+++a
  MMETSP1174-20130828|7016_1 115 EKKTAVKKEKASPRSKNSSSPRTTTNSTNSSAAVTVKKEAGKLSS--TQLDDISSVRTE-VGSLKQRLA 180
                 45556666666666666666666666666****************..*********998.888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 2092.97
//
Query:       MMETSP1174-20130828|7015_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2012.83
//
Query:       MMETSP1174-20130828|7024_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1022.92
//
Query:       MMETSP1174-20130828|7023_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|7025_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.0   0.7      0.065   10.9   0.1    1.9  2  TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family


Domain annotation for each model (and alignments):
>> TIGR03745  conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   1.6e-05     0.065      27      74 ..      14      62 ..       9      71 .. 0.78
   2 ?    0.7   0.0     0.024        99      40      62 ..      98     119 ..      69     121 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR03745 27 gegsgilqtlknylydgllllgLliaaiaflgvavaal.atyaeiregk 74
                ++  ++++ +++ +yd++ll  + +  i fl+ a++++ a+ + + ++k
  MMETSP1174-20130828|7025_1 14 SDDDQTVEVIQGTIYDIVLLAMIGLFSIPFLAAATHTVfAVRSMVISEK 62
                45566899*************999**********997514445555555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.024
   TIGR03745  40 lydgllllgLliaaiaflgvava 62 
                 +     llg li  + fl+v+ a
  MMETSP1174-20130828|7025_1  98 MDTTGCLLGFLIF-LPFLMVCCA 119
                 3334566776664.567777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 575.10
//
Query:       MMETSP1174-20130828|7022_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|7026_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 573.47
//
Query:       MMETSP1174-20130828|7028_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1315.34
//
Query:       MMETSP1174-20130828|7032_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|7041_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.8   0.0      0.029   11.6   0.0    1.1  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.1e-06     0.029      43     104 ..       5      66 ..       2      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.1e-06
   TIGR02311  43 hapndvrtllsqlqalasyassPvvrpaigdtvlikrlldiGaqtllvPmvesaeqaeaavk 104
                  a+  +  ++ q+q   s +   v+r+   d++++ +l+  Ga   lvP++    + +++ +
  MMETSP1174-20130828|7041_1   5 GAAAVIPAIIRQMQEDPSEEILYVLRALALDPTVLDNLVSAGAVGALVPILSDLSEGDQIDA 66 
                 567778999*****************************************988766655433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|7044_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|7043_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1575.62
//
Query:       MMETSP1174-20130828|7046_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1174-20130828|7048_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-76  252.6   0.4    6.6e-76  252.4   0.3    1.0  1  TIGR00101 ureG: urease accessory protein UreG
    7.6e-21   72.4   0.0    9.8e-21   72.1   0.0    1.1  1  TIGR00073 hypB: hydrogenase accessory protein HypB
    0.00038   17.5   1.9    0.00088   16.3   1.3    1.5  1  TIGR00750 lao: LAO/AO transport system ATPase
    0.00073   17.1   0.0     0.0013   16.3   0.0    1.3  1  TIGR00235 udk: uridine kinase
     0.0015   16.1   0.0      0.023   12.3   0.0    2.3  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   0.3     8e-79   6.6e-76       3     193 ..      74     264 ..      72     270 .. 0.96

  Alignments for each domain:
  == domain 1    score: 252.4 bits;  conditional E-value: 8e-79
   TIGR00101   3 kigvagpvgsgktaliealtrelakkydlavitndiytkedaeflvknsvlpperilgvetggcphtairedaslnleaveelearfpdlelvliesggdnlsatfspeladltifvidvaegdkiprkggpgitrsdllvinkidlaplvgadlkvmerdakkmrge.kpfiftnlkkkeglddvidfiek 193
                  +g+ gpvgsgktal+ +l+r++++  ++a itndi+t+ed efl+k  +l p ri  vetggcph+aired s nl a e+l+a+  +l++v+iesggdnl+a fs elad ti+vidva gdk+prkggpg+t++dllvink+dla  vgadl+vm +da++mr++  p +++++k+  ++d++ +++ +
  MMETSP1174-20130828|7048_1  74 TVGIGGPVGSGKTALLLELCRRIRDLKSIAAITNDIFTREDGEFLTKHRALDPARIRAVETGGCPHAAIREDISANLLAAEQLTAQH-KLDMVMIESGGDNLAANFSHELADYTIYVIDVAGGDKVPRKGGPGVTQADLLVINKTDLAEAVGADLDVMAKDANRMRKGlGPVVLAQVKHGLQMDTIQEHVLQ 264
                 68*********************************************************************************9985.8****************************************************************************977379*******99999999888765 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.2e-23   9.8e-21      23     213 ..      65     265 ..      53     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.2e-23
   TIGR00073  23 erlekkgllvlnllssiGsGktlllekliealkkevkiavieGDlitkaDaeRlrkag....vkaiqintGkeChLda..klva..dalkdlelddk.dlllienvG.nLvCPadfdlGeklrvvllsvteGdDkvlkyPeifkeadlilinkvdlveavdadvekvkadvkkinPev.eiilvsaktgegldellefleek 213
                 ++  +   +++ + + +GsGkt+ll +l  ++ +   ia+i+ D+ t+ D e l k+     +++ +++tG   h     ++ a   a+++l++++k d+++ie  G nL    +++l  ++ + ++ v+ Gd ++ k    + +adl++ink+dl+eav+ad++ +++d+ +++     ++l ++k g  +d++ e++ ++
  MMETSP1174-20130828|7048_1  65 RKDLADRAFTVGIGGPVGSGKTALLLELCRRIRDLKSIAAITNDIFTREDGEFLTKHRaldpARIRAVETGGCPHAAIreDISAnlLAAEQLTAQHKlDMVMIESGGdNLAANFSHELA-DYTIYVIDVAGGDKVPRKGGPGVTQADLLVINKTDLAEAVGADLDVMAKDANRMRKGLgPVVLAQVKHGLQMDTIQEHVLQA 265
                 4444556678888999******************99****************999986222357899****988854311233333344555555556*******99789999999995.789***************999999*****************************98765389999**********99998765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.3   1.1e-06   0.00088      31     243 ..      69     268 ..      64     284 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-06
   TIGR00750  31 tGrahvvGltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsllGDrlrlqelatdpgvfirsvptrGslGGlskatrevvklldaaGfDvilvetvGvGqsevdiikvadtvvvvtlagtGDdvqaikaGvleiaDivvvnkaDkeeaekerlarlelsldleelferekgWrPkvlktsavegrGikelvdaieehkkvlkks 243
                 + ra  vG+ G  G Gk +l+ +l +++r   + +a i  D   ++  G  l  + r  + a+  +v     p   +   +s++  ++ +l      D++++e  G   +     ++ad ++ v    +GD+v       +  aD++v+nk+D  ea         l++  ++  + +kg  P vl    + ++G++  +d+i+eh   + ++
  MMETSP1174-20130828|7048_1  69 ADRAFTVGIGGPVGSGKTALLLELCRRIR-DLKSIAAITNDIF-TREDGEFLT-KHRALDPARIRAVETGGCPHAAIREDISANLLAAEQLTAQHKLDMVMIESGGDNLAANFSHELADYTIYVIDVAGGDKVPRKGGPGVTQADLLVINKTDLAEAV-----GADLDVMAKDANRMRKGLGPVVLA---QVKHGLQ--MDTIQEHVLQALAA 268
                 56899******************998865.5677888887865.566677775.55666667777777778888888899999999999999999*********999998888899***9999999999***98765545677**********99887.....344555555556666788887774...4466665..57777776554444 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0013       6      48 ..      72     115 ..      67     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-06
   TIGR00235   6 tiiigiaGasgsGkttvaekivellkk.ekivlisqDnyYkdls 48 
                 ++ +gi+G  gsGkt++  +++  +++ ++i+ i++D + ++  
  MMETSP1174-20130828|7048_1  72 AFTVGIGGPVGSGKTALLLELCRRIRDlKSIAAITNDIFTREDG 115
                 5679**********************9899********987754 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.8e-05     0.023       4      89 ..      73     222 ..      70     270 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...................................................................ykvnllDTaG.qedfdairrlyvreverslevvdivil 89 
                 + ++i G v++GK++Ll +l ++  +  +s + +t d+ t+   edG+                                                                    y++ ++D+aG  +  ++  + ++++   ++ ++d++ +
  MMETSP1174-20130828|7048_1  73 FTVGIGGPVGSGKTALLLELCRRI-RDLKSIAAITNDIFTR---EDGEFltkhraldpariravetggcphaairedisanllaaeqltaqhkldmvmiesggdnlaanfsheladYTIYVIDVAGgDKVPRKGGPGVTQADLLVINKTDLAEA 222
                 6799*****************999.7777779999999995...99976889999999666666666666666666666666666666666666666666666666666666666666666666663222334455555555566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1179.90
//
Query:       MMETSP1174-20130828|7050_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 577.90
//
Query:       MMETSP1174-20130828|7047_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   13.3   0.0      0.016   12.5   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.8e-06     0.016      95     137 ..     292     336 ..     273     350 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.8e-06
   TIGR03724  95 llkevGelvgklHkagivhgDlttsNiiv..kddklyliDfGLgk 137
                 ++ +v+e+  ++H  +++hgDl  +Ni+v  +++ + l DfG g 
  MMETSP1174-20130828|7047_1 292 IAGSVAEACRHCHALKVCHGDLYAHNILVdpTTGACKLGDFGAGF 336
                 6678999999*******************5447788888998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1224.86
//
Query:       MMETSP1174-20130828|7049_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1643.04
//
Query:       MMETSP1174-20130828|7052_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 1833.18
//
Query:       MMETSP1174-20130828|7057_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   26.0   0.0    1.5e-06   25.4   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      3e-06   24.3   0.0    4.4e-06   23.8   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0009   16.1   0.0     0.0014   15.5   0.0    1.2  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
     0.0013   16.2   0.0     0.0021   15.5   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0015   15.2   0.0     0.0021   14.7   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0015   16.1   0.0     0.0034   14.9   0.0    1.6  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-09   1.5e-06     164     241 ..     287     364 ..     275     383 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.2e-09
   TIGR01628 164 fikksere.....atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelng 241
                 + ++ ++        k++  t l+v  l++ ++e  lr++F +fGei ++ + +d+     + afv++ + e+A+ A+ +l+ 
  MMETSP1174-20130828|7057_1 287 YLRRARESapeltKPKDESITSLWVGGLEPPMSEADLRDKFYSFGEIRAVRILMDK-----CCAFVEFTTREAAETAASKLHR 364
                 55555544455544567778888888888888888888888888888888888874.....5678888888888888888764 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.4e-09   4.4e-06     212     288 ..     299     370 ..     285     395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 6.4e-09
   TIGR01622 212 dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAG 288
                 ++p+  + + L+vG+l   ++E +Lr+ F +FGei  v++ +D+         F++F+  e a  A  kl   l + G
  MMETSP1174-20130828|7057_1 299 TKPKDESITSLWVGGLEPPMSEADLRDKFYSFGEIRAVRILMDKCC------AFVEFTTREAAETAASKLHRnLTVRG 370
                 4566677789*********************************887......8************9999875455555 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     2e-06    0.0014       9      73 ..     313     376 ..     308     392 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2e-06
   TIGR01649   9 nlpeevveadlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvq 73 
                 +l   + eadl +    fG++  v +l  k  A+vEf + e+A+++ +     ++++rG ++ ++
  MMETSP1174-20130828|7057_1 313 GLEPPMSEADLRDKFYSFGEIRAVRILMDKCCAFVEFTTREAAETAASKLHR-NLTVRGLKLDID 376
                 6778899************************************999876654.456677666555 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06    0.0021      85     151 ..     304     362 ..     297     388 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.1e-06
   TIGR01661  85 dsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikal 151
                 +si  + l+v Gl   m+  +l   f  fG+i + ril+d+         f+ f  re a++a  +l
  MMETSP1174-20130828|7057_1 304 ESI--TSLWVGGLEPPMSEADLRDKFYSFGEIRAVRILMDK------CCAFVEFTTREAAETAASKL 362
                 555..357777777777777777777777777777777664......34566666666666665555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.1e-06    0.0021     233     325 ..     306     399 ..     295     444 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.1e-06
   TIGR01648 233 vkilyvrnlmletteeiieksfsefkpGavervkkird..yafvhfedredavkamdelnGk.eleGseievtlakPvdkesyvrytkaakgrgke 325
                 +  l+v  l   ++e  ++ +f  f  G +  v+ + d   afv f+ re+a  a  +l  +  + G ++++  akP    s    + + +g+g+ 
  MMETSP1174-20130828|7057_1 306 ITSLWVGGLEPPMSEADLRDKFYSF--GEIRAVRILMDkcCAFVEFTTREAAETAASKLHRNlTVRGLKLDIDWAKPASLSSQNGSKPSGGGGGTG 399
                 55678888888899999999**999..999999999884469**************9997653799***********9988655554444444443 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     5e-06    0.0034     186     321 ..     301     422 ..     289     437 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5e-06
   TIGR01659 186 pggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvr.laeehgkakaahymsklglikygeygtgnggvaggsaanlpqpp.afmgann 321
                 p  esi  t l+v  l   +++ +l   f  +g+i    il dk        afv f  re a+ a s l           ltvr l  +   ak a   s+ g+   g++g+ ++g+++ ++  lp+pp +  +++ 
  MMETSP1174-20130828|7057_1 301 PKDESI--TSLWVGGLEPPMSEADLRDKFYSFGEIRAVRILMDKC------CAFVEFTTREAAETAASKLHR--------NLTVRgLKLDIDWAKPASLSSQNGSKPSGGGGGTGAGAPSPGQFRLPPPPgTSASMAP 422
                 555655..6788888888888888888888888888888888875......588999999888888888864........5666644456677888888888888877777766666666666655555513344445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 1778.55
//
Query:       MMETSP1174-20130828|7053_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-06   22.8   0.1    5.9e-05   20.0   0.1    2.3  3  TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
    0.00032   17.7   0.0     0.0051   13.7   0.0    2.1  2  TIGR03702 lip_kinase_YegS: lipid kinase YegS


Domain annotation for each model (and alignments):
>> TIGR00147  TIGR00147: lipid kinase, YegS/Rv2252/BmrU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.9e-08   5.9e-05      59     102 ..     145     186 ..     130     194 .. 0.87
   2 ?   -2.7   0.0      0.23   4.7e+02     158     207 ..     289     342 ..     261     347 .. 0.60
   3 ?   -1.8   0.0      0.12   2.4e+02     254     277 ..     409     432 ..     407     438 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.9e-08
   TIGR00147  59 dtvivlGGDGTinevvnalkdlddkPalgilPaGtaNDFsralg 102
                  + +  GGDGT+  v   lk++     l+i+P+Gt ND +r+ g
  MMETSP1174-20130828|7053_1 145 LRALCCGGDGTVGWVLSLLKEVSIP--LAIMPLGTGNDLARVTG 186
                 566789****************877..**************976 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.23
   TIGR00147 158 LgklsY.ilsglealatlkpfeleiktedeeiqgeavlllvv...ngrfvGgge 207
                   kl Y ++ ++ + + +  +++++ ++++ +q       vv    + ++Gg +
  MMETSP1174-20130828|7053_1 289 VNKLLYgYMAAISKRPGALVDKVAVDIDGKSLQLPTSTQSVVllnVNSYMGGVQ 342
                 455555466677777777788899999999888544333333221334566655 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.12
   TIGR00147 254 vkasrieietkekiklnlDGEvlg 277
                 ++ sr+ i     ++l++DGE++ 
  MMETSP1174-20130828|7053_1 409 GQGSRVRIVSAMPLPLQIDGEPMN 432
                 57899999999999*******996 PP

>> TIGR03702  lip_kinase_YegS: lipid kinase YegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.5e-06    0.0051      57      98 ..     148     185 ..     138     213 .. 0.82
   2 ?    1.5   0.0     0.013        26     250     271 ..     411     432 ..     370     452 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-06
   TIGR03702  57 vagGGdGtlrevaealaearddaapalallPlGtandfataa 98 
                 +  GGdGt+  v + l     +++  la++PlGt nd+a+ +
  MMETSP1174-20130828|7053_1 148 LCCGGDGTVGWVLSLLK----EVSIPLAIMPLGTGNDLARVT 185
                 5689****998866554....445579************976 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.013
   TIGR03702 250 lpwleieaaeeltlnldGePle 271
                  + + i +a +l l +dGeP++
  MMETSP1174-20130828|7053_1 411 GSRVRIVSAMPLPLQIDGEPMN 432
                 56788999************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1545.24
//
Query:       MMETSP1174-20130828|7059_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       349  (0.0850804); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1575.44
//
Query:       MMETSP1174-20130828|7061_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 235.44
//
Query:       MMETSP1174-20130828|7060_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-42  142.9   0.0    3.8e-42  141.9   0.0    1.4  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    6.7e-14   49.5   0.0    9.5e-12   42.4   0.0    1.9  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    4.4e-11   40.7   0.0    1.3e-09   35.9   0.0    2.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    5.2e-09   33.7   0.0    7.4e-08   29.9   0.0    2.0  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      2e-07   28.0   0.1    6.7e-07   26.3   0.0    1.8  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    7.3e-07   26.3   0.0    9.7e-07   25.9   0.0    1.1  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.1e-06   25.9   0.0    1.5e-06   25.4   0.0    1.3  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    5.2e-06   23.8   0.0    9.5e-06   23.0   0.0    1.4  1  TIGR00436 era: GTP-binding protein Era
    1.3e-05   22.3   0.0    1.7e-05   21.9   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    7.2e-05   20.3   0.0    0.00044   17.7   0.0    2.0  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0046   13.7   0.1      0.025   11.3   0.0    1.9  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.018   11.9   0.1      0.085    9.7   0.0    1.9  2  TIGR00991 3a0901s02IAP34: GTP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   1.1e-44   3.8e-42       7     175 ..      23     210 ..      17     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 141.9 bits;  conditional E-value: 1.1e-44
   TIGR03598   7 aaklkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne......elrlvDlPGYGya..kvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkea............kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkk 175
                 a+++ +lp+ + pe++f+GrSNvGKSsl+N+L++rk++a tS+tPG+T++  f+ vne       +rlvD+PG G+   ++s+ ++++w++l+++YL+ re+Lk+v+ l+D++ +++++Dl+l+++++              +++++vvltK+D++k ++++k  ++v+++l+k  ++ ++l++Ss+  
  MMETSP1174-20130828|7060_1  23 ANTMARLPRPTEPEVVFMGRSNVGKSSLVNMLCSRKAMAPTSSTPGHTRNFYFYMVNEnrtdalPFRLVDVPGLGFTteEISQGRRDSWRSLLSRYLSVRESLKAVFHLIDAKAGIQKVDLDLIRIATPLrrerttengslpSVRYIVVLTKIDRVKPEAVAKLRRDVTTALDKAMTE-DTLTTSSVYD 210
                 678899**************************************************77434333479*********933578999****************************************987654445556666667899****************************9665.6777777644 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.8e-14   9.5e-12       2     104 ..      36     149 ..      35     158 .. 0.72
   2 !   10.0   0.2   0.00019     0.065     259     344 ..     126     222 ..     118     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.8e-14
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeae...lkgkefiliDTgGleeeedelekeireqae......laieea.dvilfvvdareglteeDeeiaklL 104
                  v+ +Gr NVGKS+L+N l+ ++  A +++tpg TR      ++   ++  +f+l+D +Gl  +++e+++  r+  +      l+++e+ ++++ ++da++g+++ D +++++ 
  MMETSP1174-20130828|7060_1  36 EVVFMGRSNVGKSSLVNMLCSRKaMAPTSSTPGHTRNFYFYMVNenrTDALPFRLVDVPGLGFTTEEISQGRRDSWRsllsryLSVRESlKAVFHLIDAKAGIQKVDLDLIRIA 149
                 68999**************98874699**********866555422277799*********6666665554443322011111344444389999************9988764 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00019
   TIGR03594 259 dvvllvlDategiseqDlkiaglil..eegka..........lvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 + v+ ++Da++gi++ Dl ++++++  ++++            ++v+ K+D v + +  ++l++++++ l+++   +++++S  ++ +  +++ea  +
  MMETSP1174-20130828|7060_1 126 KAVFHLIDAKAGIQKVDLDLIRIATplRRERTtengslpsvrYIVVLTKIDRV-KPEAVAKLRRDVTTALDKAMTEDTLTTSSVYDVKEVEIFEASSK 222
                 568899************99998853322221122222333369*********.99*****************9999999999988877777777655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.9e-12   1.3e-09       3     131 ..      34     189 ..      33     221 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 3.9e-12
   TIGR00231   3 eikivivGhvdvGKstLlnsllknk.isiteskpgvtrdyvteqieedGkt.ykvnllDTaG........qedfdairrlyvreverslevvdivilvldveeglekqtkeiih.......eakkkg.....vpiilvvnKiDlkd.....dlktk 131
                 e  +v++G+++vGKs+L n l  +k +++t+s+pg tr++  + + e+      + l+D++G         + ++  +r  + +  ++ e +  v++++d++ g +k +  +i+       e+++++     v  i+v++KiD ++     +l  +
  MMETSP1174-20130828|7060_1  34 EPEVVFMGRSNVGKSSLVNMLCSRKaMAPTSSTPGHTRNFYFYMVNENRTDaLPFRLVDVPGlgftteeiSQGRRDSWRSLLSRYLSVRESLKAVFHLIDAKAGIQKVDLDLIRiatplrrERTTENgslpsVRYIVVLTKIDRVKpeavaKLRRD 189
                 578******************87763689************9988887644688*********999666533344556666777778888888899999999888777666554111111133443323333666777777777775544444444 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.2e-10   7.4e-08      98     173 ..      14      96 ..       3     104 .. 0.80
   2 ?    1.6   0.0     0.093        32      50      94 ..     167     211 ..     151     225 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2.2e-10
   TIGR03596  98 ikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkk.vakvgnkpgvTksqqwiklske......leLlDtPGi 173
                 +k++  e k+++ a+  ++++ +++ +G  NvGKS+l+N l+++k +a +  +pg T++     ++++      + L+D PG+
  MMETSP1174-20130828|7060_1  14 VKSVRLESKANTMARLPRPTEPEVVFMGRSNVGKSSLVNMLCSRKaMAPTSSTPGHTRNFYFYMVNENrtdalpFRLVDVPGL 96 
                 45555566667778888899999******************987725789*********998888775444555789999986 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.093
   TIGR03596  50 prlivlnkaDladpektkkwlkyfeekgkkalavnakkkkkvkki 94 
                 + ++vl+k D ++pe+++k+ +  ++   ka++ ++ ++++v  +
  MMETSP1174-20130828|7060_1 167 RYIVVLTKIDRVKPEAVAKLRRDVTTALDKAMTEDTLTTSSVYDV 211
                 5699************99999888877777777766666665554 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     2e-09   6.7e-07       7     160 ..      34     212 ..      28     230 .. 0.58

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2e-09
   TIGR03918   7 rlhialfGrrNaGKSsliNaltg.qdvaivsdvpGtTtDpvekamE..llplGpvvliDTaGldD.egeLGelRvektrevlek.......tdlallvvdaeaeleeleeelleel...kek.........kipvivvlnkidlkeeeke..keklekkkeeevvlvsakekegieelk 160
                   +++++Gr N+GKSsl+N+l+  + +a +s++pG T       +    ++  p  l+D +Gl   + e+++ R +  r+ l++          +  ++da+a++++++ +l++ +   +++         ++ +ivvl+kid ++ e+    +++ +++ +++++ ++ +++++ ++k
  MMETSP1174-20130828|7060_1  34 EPEVVFMGRSNVGKSSLVNMLCSrKAMAPTSSTPGHTRNFYFYMVNenRTDALPFRLVDVPGLGFtTEEISQGRRDSWRSLLSRylsvresLKAVFHLIDAKAGIQKVDLDLIRIAtplRRErttengslpSVRYIVVLTKIDRVKPEAVakLRRDVTTALDKAMTEDTLTTSSVYDVK 212
                 56799****************86156899********9876555531145667889999999986255688777766665554411111114455566677777777766665422111111111111111345666666666666554432333344444455555555555555555 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.8e-09   9.7e-07     159     308 ..      36     200 ..      26     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.8e-09
   TIGR02729 159 dvglvGlpnaGkStllsavsa..akpkiadYpFtTlvPnLGvveveeek..sfvlaDiPgl...iegasega.....gLGleFLkHiertrvllhlidlseedek...dpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvla 308
                 +v ++G +n+GkS+l++ + +  a +  ++ p  T +  + +v+ ++++   f l+D+Pgl    e+ s+g+      L  ++L   e  + + hlid+++  +k   d ++ ++ +++e ++ + +L + + +vvl+kid ++ e +++l ++++++l+k +++
  MMETSP1174-20130828|7060_1  36 EVVFMGRSNVGKSSLVNMLCSrkAMAPTSSTPGHTRNFYFYMVNENRTDalPFRLVDVPGLgftTEEISQGRrdswrSLLSRYLSVRESLKAVFHLIDAKAGIQKvdlDLIRIATPLRRERTTENGSLPSVRYIVVLTKIDRVKPEAVAKLRRDVTTALDKAMTE 200
                 68899************99761255567888999999999999877654116899*****976667888885333337999*****************987544434688999999999999999***********************99999999888444433 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.5e-09   1.5e-06     139     216 ..      16      97 ..       4     133 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.5e-09
   TIGR03597 139 kkglkellelikkare..kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesv......llDtpGii 216
                    l++ ++++ +  +  + +v+++G +NVGKSsl+N l++ +     +  tS+ pg T ++    ++++ +      l+D pG+ 
  MMETSP1174-20130828|7060_1  16 SVRLESKANTMARLPRptEPEVVFMGRSNVGKSSLVNMLCSRKA----MAPTSSTPGHTRNFYFYMVNENRTdalpfrLVDVPGLG 97 
                 5555555555555544446799******************6555....56679999988875444443332212222377777765 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.8e-08   9.5e-06       4      61 ..      38      99 ..      36     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.8e-08
   TIGR00436  4 ailGrpnvGKSTLlNkllgqki.sivSpkaqTTrnrisgiltegasq...iifiDtPGlhek 61
                  +Gr+nvGKS L+N l+  k  + +S+ +  Trn    ++ e+++      ++D+PGl   
  MMETSP1174-20130828|7060_1 38 VFMGRSNVGKSSLVNMLCSRKAmAPTSSTPGHTRNFYFYMVNENRTDalpFRLVDVPGLGFT 99
                568***************99862679********9766666655555222668****98655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     5e-08   1.7e-05     211     274 ..      36     103 ..      18     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5e-08
   TIGR00450 211 klaivGktNvGKSSLlNal.lkkdraiVsdikGttRD...vvEedleleGilvkllDtAGiReaadkv 274
                  ++ +G+ NvGKSSL+N+l ++k  a  s+ +G tR+   ++ ++   +  +++l+D  G+  + +++
  MMETSP1174-20130828|7060_1  36 EVVFMGRSNVGKSSLVNMLcSRKAMAPTSSTPGHTRNfyfYMVNENRTDALPFRLVDVPGLGFTTEEI 103
                 68999************87356778899********93333444556778888888888876666665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06   0.00044     125     146 ..      37      58 ..      17      72 .. 0.87
   2 ?    0.1   0.0      0.31   1.1e+02      70      93 ..     166     189 ..     162     220 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-06
   TIGR00157 125 svfaGqSGVGKSSLiNlldpev 146
                  vf+G+S VGKSSL+N+l ++ 
  MMETSP1174-20130828|7060_1  37 VVFMGRSNVGKSSLVNMLCSRK 58 
                 69****************9875 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.31
   TIGR00157  70 iepiivlnkkdlleeedaekeqle 93 
                 ++ i+vl+k+d ++ e ++k + +
  MMETSP1174-20130828|7060_1 166 VRYIVVLTKIDRVKPEAVAKLRRD 189
                 6789999****9999998854444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.3e-05     0.025     185     216 ..      30      61 ..      11      64 .. 0.74
   2 ?   -0.0   0.0      0.21        71     302     326 ..     166     190 ..     155     206 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.3e-05
   TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaevla 216
                  + + p+v ++G  N GKs+l+n+l++ +++a
  MMETSP1174-20130828|7060_1  30 PRPTEPEVVFMGRSNVGKSSLVNMLCSRKAMA 61 
                 3456799*******************998875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.21
   TIGR03156 302 ipvllvlNkidkleeeeleeleekk 326
                 ++ ++vl kid+++ e++++l+++ 
  MMETSP1174-20130828|7060_1 166 VRYIVVLTKIDRVKPEAVAKLRRDV 190
                 57899*********99998887764 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00025     0.085      41      96 ..      37      96 ..      33     103 .. 0.70
   2 ?   -0.3   0.0      0.27        93     119     151 ..     169     201 ..     121     210 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00025
   TIGR00991 41 ilvmgkggvgksstvnsiigervaavsafqseglrp...vlvsrtra.gftlniidtpgl 96
                ++ mg+  vgkss vn++   +++a ++      r     +v   r+  + + ++d pgl
  MMETSP1174-20130828|7060_1 37 VVFMGRSNVGKSSLVNMLCSRKAMAPTSSTPGHTRNfyfYMVNENRTdALPFRLVDVPGL 96
                789****************99987654443333333111566666652456777777776 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.27
   TIGR00991 119 idvllyvdrldayrvddldkqvvkaitdsfgke 151
                 i vl  +dr+    v +l + v  a+ +++  +
  MMETSP1174-20130828|7060_1 169 IVVLTKIDRVKPEAVAKLRRDVTTALDKAMTED 201
                 556777777777777777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 760.51
//
Query:       MMETSP1174-20130828|7066_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1423.34
//
Query:       MMETSP1174-20130828|7067_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1436.35
//
Query:       MMETSP1174-20130828|7069_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-21   72.8  11.0    3.6e-14   50.8   0.9    2.1  2  TIGR00803 nst: UDP-galactose transporter
     0.0017   15.6   4.1     0.0017   15.6   2.9    2.3  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
      0.019   12.3   1.6      0.035   11.4   1.1    1.4  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   1.9   4.7e-10   6.5e-07       2      70 ..      56     125 ..      55     136 .. 0.93
   2 !   50.8   0.9   2.6e-17   3.6e-14      83     222 .]     169     307 ..     156     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.7e-10
   TIGR00803   2 lsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivql 70 
                 + V ++i+ + n l ++a+  ++aa + v  qlkil ta + + +l+++l   qw +l  l+lg++ v +
  MMETSP1174-20130828|7069_1  56 MLVLAMIYGLMNSLSFIAIRRIDAAAFTVCaQLKILATASFAVIILHRRLTVTQWRALITLVLGAILVTV 125
                 557789**********************************************************999865 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 2.6e-17
   TIGR00803  83 lvvglsavlsallssglagvyfekilkdk.dts.fyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  v+g  avl+ +  sg+a++yfek++k + +++ ++ rn ql l +  + + ++ l +g   + +g   g      ++ ll ++gg++v+l vkyad+++k +++a si++ ++++  l d +l+   ++g+ +v+ ++l Y
  MMETSP1174-20130828|7069_1 169 AVIGYTAVLVEVTLSGFASIYFEKVIKRSpEKLtIWHRNFQLALHSSWL-YTMAILLNGGGEAGFG--GGWSPLACVIALLGAFGGILVALSVKYADSILKTMATAGSILVATTAGHFLLDGPLDTPMIIGASVVVSSVLNY 307
                 578999******************9998734557************999.7777777777666666..799999999999*********************************************************99877 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.9   1.3e-06    0.0017      49     118 ..      55     124 ..      46     134 .. 0.91
   2 ?    2.5   1.8     0.013        17     223     264 .]     263     305 ..     174     305 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.3e-06
   TIGR00950  49 llllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlll 118
                  +l+ a+  g++++l f+a+ +  +a  ++   l  l ++ +  ++ ++r+++ ++ A+++ ++G++l+ 
  MMETSP1174-20130828|7069_1  55 KMLVLAMIYGLMNSLSFIAIRRIDAAAFTVCAQLKILATASFAVIILHRRLTVTQWRALITLVLGAILVT 124
                 58999************************************************************87765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.013
   TIGR00950 223 saasilall.eplvallLgllilgetlslvqliggalilaavl 264
                 s++ ++a++ ++lva + g ++l   l+ +  ig+++++++vl
  MMETSP1174-20130828|7069_1 263 SILKTMATAgSILVATTAGHFLLDGPLDTPMIIGASVVVSSVL 305
                 456677777589****************************997 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.1   2.5e-05     0.035     222     282 ..      55     114 ..      37     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.5e-05
   TIGR00817 222 vslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvi 282
                 ++lv+a+ i+ l++ ++f  + r+ +  + v   lK ++  +++++++++++++ q   +i
  MMETSP1174-20130828|7069_1  55 KMLVLAM-IYGLMNSLSFIAIRRIDAAAFTVCAQLKILATASFAVIILHRRLTVTQWRALI 114
                 5788888.********************************************998865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1551.87
//
Query:       MMETSP1174-20130828|7072_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-32  109.0   0.0    5.6e-32  108.8   0.0    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.3e-28   98.0   0.3    1.5e-28   97.8   0.2    1.0  1  TIGR02053 MerA: mercuric reductase
    2.6e-16   57.0   0.2      3e-16   56.9   0.1    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    2.9e-14   50.6   0.0    3.3e-14   50.4   0.0    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    5.1e-14   49.8   0.1    5.9e-14   49.6   0.1    1.0  1  TIGR03452 mycothione_red: mycothione reductase
    6.3e-10   36.6   0.2    7.2e-10   36.5   0.1    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    6.7e-05   19.4   0.2    7.7e-05   19.2   0.1    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   9.6e-35   5.6e-32     303     450 ..       1     151 [.       1     161 [. 0.91

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 9.6e-35
   TIGR01350 303 yaiGDvigk.lmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeq.akeegievkvgkfpfaangkalalee.tdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikea 450
                 +a+GD++++ + L hvA +++ v++++++ + + +i + +vP+v+yt+Pe a+vGl  +  a ++g++v v +  +++n +a+  +  ++Gf k+++ k t+ei+Ga++v+++a e+i+e++la++ ++ ++ + + ih+ Pt sEa++  
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGvPRLTHVAGEMAKVVVQNALFDDAWKISSLVVPAVMYTDPEYATVGLHAAGvAERAGVDVDVYRTGLEHNDRAILEGTdDRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAVMGC 151
                 79***9876379*************999877778**********************9987255678****************99875388*********************************************************9876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.2   2.6e-31   1.5e-28     302     447 ..       1     149 [.       1     159 [. 0.94

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 2.6e-31
   TIGR02053 302 yAAGDvikg.lqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteee.lakagievesrtvkleavpralinr.etrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglk 447
                 +A GD+  g ++l +vA++   v+ +nal +   k+   v+P+v++tdPe+A+vGl  +  +++ag++v++    le+  ra  ++ ++rG+ K+   k+t  ++g+ +vae+A+e+ine +la+k g+ +  + + +h ++t +E++ 
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGvPRLTHVAGEMAKVVVQNALFDDAWKISSLVVPAVMYTDPEYATVGLHAAGvAERAGVDVDVYRTGLEHNDRAILEGtDDRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAVM 149
                 799****99789******************9*************************998725689*****************9986378*********************************************************986 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   5.1e-19     3e-16     297     442 ..       1     148 [.       1     151 [. 0.94

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 5.1e-19
   TIGR01424 297 yavGdvtdri.nltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPm.katlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeel 442
                 +avGd +  + +lt va + a++ ++ +  ++  k++  +v + +++ Pe atvGl  +  +e+++ d++vyr+ ++   +a l G  ++ + k++  + +d ++Ga +v e a+e+i  +++a+k G+  +   + +  +P+++e +
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGVpRLTHVAGEMAKVVVQNALFDDAWKISSLVVPAVMYTDPEYATVGLHAAGVAERAGVDVDVYRTGLEHNdRAILEGTDDRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAV 148
                 79***9998867*************************99999999******************************9876156689*****************************************************999*999865 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   5.6e-17   3.3e-14     315     467 ..       1     150 [.       1     159 [. 0.89

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 5.6e-17
   TIGR01438 315 yavGdivedkleltpvaikaGklladr.lfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvk 467
                 +avGd + +++ lt va +  k++ +  lf+d+  ++    vp+ ++t  ey++vGl      e+ G + v+v+ + +   + ++ +  d +  + k++c k   + +vG  +v   age+++ +++a++ gv    +   i  +p+++e  + 
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGVPRLTHVAGEMAKVVVQNaLFDDAW-KISSLVVPAVMYTDPEYATVGLHAAGVAERAGVD-VDVYRTGLEHNDRAILEGTD-DRGFCKILCRKGT-DEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAVMG 150
                 8******************999988762666665.556679*******************999999975.9*********9999999877.77888****8765.569******************************************9875 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1     1e-16   5.9e-14     299     433 ..       1     137 [.       1     150 [. 0.83

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1e-16
   TIGR03452 299 falGdvsspy.qlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqe.areaGlditvkvq..dygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelark 433
                 fa+Gd ++   +l hva + a+vv +n l d++ k +   +vpa ++tdp  atvGl  +  a  aG d+ v     ++ d a      d+ g++k+++ k+t +++Ga ++ ++a  +i+++  a+  g+  r + r+
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGVpRLTHVAGEMAKVVVQNALFDDAWK-ISSLVVPAVMYTDPEYATVGLHAAGvAERAGVDVDVYRTglEHNDRAIL-EGTDDRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRN 137
                 899998876548*****************998765.66789****************9876266789998886542266777764.345889***********************************999998887764 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   1.2e-12   7.2e-10     299     446 ..       1     148 [.       1     151 [. 0.86

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.2e-12
   TIGR01421 299 yalGdvv.GkveltPvaiaaGrk.lserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekq.ksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseel 446
                 +a+Gd   G   lt va +  +  + + lf+     k+    vP+v+++ Pe +tvGl      e+ G + v vy++ +     a+++  + +   k++c    + +vG  ++   + e+++  ++a+k G         +  +Pt+se +
  MMETSP1174-20130828|7072_1   1 FAVGDCAaGVPRLTHVAGEMAKVvVQNALFDD--AWKISSLVVPAVMYTDPEYATVGLHAAGVAERAGVD-VDVYRTGLEHNDRAILEGTDdRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAV 148
                 68999752777999999876665167789986..56888999****************999888888876.9*************99876515667************************************999999999999**99975 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.3e-07   7.7e-05     322     467 ..       1     148 [.       1     157 [. 0.88

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.3e-07
   TIGR01423 322 yaigdvtdrv.mltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakky.ekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeel 467
                 +a+gd +  v  lt va +    vv+  + +   k     v + +++ p   ++gl     a +   +v vy + +      i   +  +  +ki+  ++  e++g  l+ + + e+i+ +++++k +  +      i  +pt++e +
  MMETSP1174-20130828|7072_1   1 FAVGDCAAGVpRLTHVAGEMAKVVVQNALFDDAWKISSLVVPAVMYTDPEYATVGLHAAGVAERAgVDVDVYRTGLEHNDRAILEGTDDRGFCKILCRKGTDEIVGATLVAERAGEMINEISLAMKSGVGLRAVGRNIHAYPTTSEAV 148
                 688998877746999999988899988888888899999999999999********9888776651589999999988888898889999999**************************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 644.42
//
Query:       MMETSP1174-20130828|7075_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 664.35
//
Query:       MMETSP1174-20130828|7077_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|7076_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-07   28.1   0.0    4.9e-07   27.6   0.0    1.2  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.2e-10   4.9e-07      26      88 ..      96     159 ..      76     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.2e-10
   TIGR03677  26 kikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvk.kkedlGkaaGle 88 
                 k+  G ne+t+ +e+G  +l +++ d +P+ +v hl +++     p + +      lGka G+ 
  MMETSP1174-20130828|7076_1  96 KLCIGVNETTRGIEKGPLQLLLVSRDAQPPRLVEHLIEMARLTSSPCLVLPnASGSLGKALGVR 159
                 66679***********************************999998776651566899999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 852.27
//
Query:       MMETSP1174-20130828|7080_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1174-20130828|7083_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|7085_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|7090_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 159.30
//
Query:       MMETSP1174-20130828|7089_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1124.66
//
Query:       MMETSP1174-20130828|7095_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|7093_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1174-20130828|7097_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|7094_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1195.04
//
Query:       MMETSP1174-20130828|7096_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   43.8   0.0    2.9e-12   43.7   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.2e-12   43.3   0.0    5.9e-12   43.2   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.4e-08   30.4   0.0    7.8e-08   30.1   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    7.2e-07   26.2   0.0    9.4e-07   25.8   0.0    1.0  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.8e-06   25.2   0.0    2.1e-06   25.0   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.7e-05   21.8   0.1    3.3e-05   21.5   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
      5e-05   20.1   0.0    5.3e-05   20.0   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.9e-15   2.9e-12     266     365 ..       6     108 ..       2     136 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 4.9e-15
   TIGR01642 266 eatpevsqknsdinlkaveklvnsktvldsed..klyignLPldlkddqvkeLL.esFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgd 365
                 ++++ v  ++ + + ++    v  +   ++++  k+++gn+  + + d ++  L ++FGd+    ++K+  tGl KG+aF+++ d+  + +Ai+     +l +
  MMETSP1174-20130828|7096_1   6 QIDMRVQRRRKNSYTGNELINVHRRRCKEDKNaaKIFVGNIAWNTTKDELRTFLsRQFGDVANLRIVKNPFTGLPKGFAFVKFCDPISAAVAIEQGGKHELNG 108
                 67777888888888888855566666666554449****************988469************************************7544444444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     1e-14   5.9e-12     215     309 ..      34     126 ..      10     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1e-14
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiF.epFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslas 309
                 +     k++vGn+  n t +eLr      FG++ ++++ k+p tG  kG+ F++F d   a  A+e+    el GR ++   +   te ++ ++ s
  MMETSP1174-20130828|7096_1  34 EDKNAAKIFVGNIAWNTTKDELRTFLsRQFGDVANLRIVKNPFTGLPKGFAFVKFCDPISAAVAIEQGGKHELNGRILRFNDV---TEPKTPNSSS 126
                 455678*****************976268*************************************9888********97654...4444443333 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.3e-10   7.8e-08     259     343 ..      28     114 ..       8     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.3e-10
   TIGR01661 259 gaqiaasdgagycifvynlspdtdeavlqlf..gpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                 + +  ++d  +  ifv n++ +t +  l+ f   +fG v +++i++++ t   kG++fv   +   aa+ai+     +l +r+l+  
  MMETSP1174-20130828|7096_1  28 HRRRCKEDKNAAKIFVGNIAWNTTKDELRTFlsRQFGDVANLRIVKNPFTGLPKGFAFVKFCDPISAAVAIEQGGKHELNGRILRFN 114
                 444555566677899999999988877754432699999999999999999999999999999999999999998899999998765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.6e-09   9.4e-07      57     130 ..      37     111 ..      31     114 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.6e-09
   TIGR01648  57 rGcevfvGkiPrdlyedelvP.lfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrll 130
                   + +fvG i  +   del   l  + G + +lr++ + + G  +G+afv fc+   a  a+ +  ++e+ +Gr l
  MMETSP1174-20130828|7096_1  37 NAAKIFVGNIAWNTTKDELRTfLSRQFGDVANLRIVKNpFTGLPKGFAFVKFCDPISAAVAIEQGGKHEL-NGRIL 111
                 5679***************76256789**********99************************9999997.56665 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.5e-09   2.1e-06     163     244 ..      23     106 ..       9     128 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.5e-09
   TIGR01628 163 kfikksereatkekkftNlYvKnlddsvtedklrelFa.kfGeitSaivkkde.knrkrgfafvnyekaedAkkAveelngkki 244
                 + i+ ++r+ +++k+   ++v n+  + t+d+lr + + +fG++  + + k+   +  +gfafv + ++ +A+ A+e+   +++
  MMETSP1174-20130828|7096_1  23 ELINVHRRRCKEDKNAAKIFVGNIAWNTTKDELRTFLSrQFGDVANLRIVKNPfTGLPKGFAFVKFCDPISAAVAIEQGGKHEL 106
                 355666777899999999999999999999999998864799999987666553788899999999999999999987555554 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.6e-08   3.3e-05     185     252 ..      30      98 ..      10     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.6e-08
   TIGR01659 185 rpggesikdtnlyvtnlprtitddqldtifg.kygsivqknilrdkltgkprgvafvrfnkreeaqeai 252
                 r   e+ + + ++v n++   t d+l t +  ++g + +  i+++ +tg p+g afv+f     a  ai
  MMETSP1174-20130828|7096_1  30 RRCKEDKNAAKIFVGNIAWNTTKDELRTFLSrQFGDVANLRIVKNPFTGLPKGFAFVKFCDPISAAVAI 98 
                 555677778899****************987369*************************8776666665 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     9e-08   5.3e-05     108     179 ..      40     114 ..      14     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 9e-08
   TIGR01645 108 rv.vGsisfelkedtlrrafd.PfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                 ++ vG i ++   d lr  ++  fG +  + +  +p t+  kgfafv    P +a +a eq     l Gr l+ +
  MMETSP1174-20130828|7096_1  40 KIfVGNIAWNTTKDELRTFLSrQFGDVANLRIVKNPFTGLPKGFAFVKfCDPISAAVAIEQGGKHELNGRILRFN 114
                 566**************987537*************************777*******************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 570.76
//
Query:       MMETSP1174-20130828|7098_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 513.81
//
Query:       MMETSP1174-20130828|7103_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   41.9   4.9    1.5e-11   41.6   3.4    1.0  1  TIGR00898 2A0119: cation transport protein
     0.0052   13.5   1.1      0.024   11.3   0.8    1.8  1  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   3.4   7.2e-15   1.5e-11     318     505 ..       4     201 ..       2     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 7.2e-15
   TIGR00898 318 dllrtpklrkttlllmllwfttafsYygLvldleelggn........iYldllisglvelpaklitlllidr..L....gRrktmaaslllagvallllllvpeelkllrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagllsllLPetkgvaLpe 505
                 +ll+++ l k+tll  +l+f + fsY + v+    +  +        +Y + ++ + +e++a + ++ +id+  +    gR+ ++ + + l+ ++l+ +    +   l   +l+ v++ +i +a ++ ++y  E+ PT  R++g+ + + ++ +G+ +  +  y +g++   + ++i gv + l++l  l+LPet g++L++
  MMETSP1174-20130828|7103_1   4 RLLFSKVLYKRTLLAGFLAFWCYFSYSATVIYNDDVVSAddgllcdfDYDTTIFYASAEVIAPIFIFGIIDKknIgifgGRFGSQWITYTLGTLCLVGTSWARST--LSLKILTYVSRGSIMAATSVTFIYFVEIIPTRNRATGLCLDNIISVFGATFGAYWGY-SGYSADAVAFGI-GVSCFLCILPLLVLPETVGTNLED 201
                 7899999*******************99887777666666*****************************998552344579999999999988888887777666..6677899**************************************************.777777776666.999******************987 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.8   1.2e-05     0.024     410     502 .]     126     205 ..      81     205 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
   TIGR00887 410 nattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftlLiPetkgksleelsre 502
                  + tFi+  e+ P+R R+t+  +   +   Ga  ++              g+      + v   + +  +l il  l++Pet g +le+l+re
  MMETSP1174-20130828|7103_1 126 TSVTFIYFVEIIPTRNRATGLCLDNIISVFGATFGAYW----G-----YSGYS----ADAVAFGIGVSCFLCILPLLVLPETVGTNLEDLDRE 205
                 578****************9888777666666655432....1.....12333....356666677788999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1119.46
//
Query:       MMETSP1174-20130828|7111_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00096   14.8  25.9     0.0011   14.5  17.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0014   14.2  24.9     0.0018   13.9  17.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.11    9.1   3.1       0.14    8.7   2.1    1.1  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  17.9   8.4e-07    0.0011     235     397 ..       9     175 ..       1     188 [. 0.42

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.4e-07
   TIGR02168 235 eelkeeleeleeelkeaeeeleeleaelkeleeeleelrleksel....eeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlas 397
                 ++l ee e+l++elk ++e+  +l+++l+ +e ++ + ++  + l    e+++++l++el++ + ++++l++++  + er+ q++++l+  +e++ e+e+k+   e+e  +l+++l  l+ +++s+ a++ e  +++e+l+++++  ++ +++++ e+ +l+eq ++
  MMETSP1174-20130828|7111_1   9 DSLSEENEALRQELKTSAEQNGSLQQKLNSSEISVLREKSYSAVLreisEMKMTDLKSELESQSYKLQALSSRLVSATERELQMKRSLKDSQEKMVESEKKNSSIERERRRLADDLVALRSKFNSECAKAIEVWKAQEQLKENIKGNKAIIRQQNGEIIDLREQCTA 175
                 33334444444444444444444444444444444333333332211112344444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  17.2   1.3e-06    0.0018     298     470 ..       2     178 ..       1     188 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-06
   TIGR02169 298 eelkaeiekleraiaekeeeledaeerlakaeaeidklkeei...eelereiee.ekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaek 470
                 e+ +ae+ +l+++ ++ ++el+ ++e++  +++++++ +  +   ++ +  ++e  +++ + lk+el+++  +l++l ++l +  ++  ++++ lk+ +ek+ + +++  +++re++rl + l  l+++ +   a+  ++ +++++l+e+ +  ++ i+++++++  l+e+  +a +
  MMETSP1174-20130828|7111_1   2 EQAEAERDSLSEENEALRQELKTSAEQNGSLQQKLNSSEISVlreKSYSAVLREiSEMKMTDLKSELESQSYKLQALSSRLVSATERELQMKRSLKDSQEKMVESEKKNSSIERERRRLADDLVALRSKFNSECAKAIEVWKAQEQLKENIKGNKAIIRQQNGEIIDLREQCTAAFA 178
                 5678888888888899999999988888777777766543321112222223331455678999*****************999999999999******************************999999988888888888889999******99*****99999999998776655 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.1    0.0001      0.14      13     107 ..      42     136 ..      34     155 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0001
   TIGR00400  13 ilLkekkfskikevllklqpadiaevlkelpekervlllrfLskdeavdvfeelerevkekllnkfkkkevseilnkldlddlvdLLeelpaevv 107
                  +L+ek++s++   + +++ +d+   l++   k ++l  r++s  e    ++   ++ +ek++++ kk+   e   +   ddlv L   ++ e  
  MMETSP1174-20130828|7111_1  42 SVLREKSYSAVLREISEMKMTDLKSELESQSYKLQALSSRLVSATERELQMKRSLKDSQEKMVESEKKNSSIERERRRLADDLVALRSKFNSECA 136
                 579***************************************98776555555556678888888888887777777778999999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 855.93
//
Query:       MMETSP1174-20130828|7105_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   54.2   0.1    3.4e-15   54.0   0.1    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23
    3.7e-08   31.5   0.4    2.1e-07   29.1   0.3    1.9  1  TIGR02753 sodN: superoxide dismutase, Ni
  ------ inclusion threshold ------
      0.031   11.8   0.0      0.057   10.9   0.0    1.5  1  TIGR00255 TIGR00255: TIGR00255 family protein


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   2.5e-18   3.4e-15       1      69 [.      15      80 ..      15     124 .. 0.94

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 2.5e-18
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1174-20130828|7105_1 15 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 80
                8999*******************************...**************************98765 PP

>> TIGR02753  sodN: superoxide dismutase, Ni
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.3   1.6e-10   2.1e-07      20     139 ..      90     221 ..      76     224 .. 0.70

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.6e-10
   TIGR02753  20 ahCDlPCgvyD.Pasarisaeavlamtkkllalkapsskd..adeqntfsrlvavkeeqaketkkeis.vlWtDyfkpehle........kfPeLhelvwkalkllsaakvnidkakaeelldavekideif 139
                  hC +PCg++D P+      +av +++k +++ ++ s+        n+ +r v+ kee+a ++   is    +  +kp   +        ++ +  +  + ++  + ++k+++d++ a+ l +av+ + +++
  MMETSP1174-20130828|7105_1  90 GHCQVPCGIFDdPMLVAEIRQAVATIKKAMIQISELSAAGitPLSINQITRWVNTKEEHACKVITAISeYCLAQRVKPFGTAgspfasesDYIDALKAHHAVMVGAMKCKQQVDPTVADALEHAVDDFSRMY 221
                 6*********746544434467777777777777766655225567899**************999983356777887544311111111344555555667777788899999999988888888888776 PP

>> TIGR00255  TIGR00255: TIGR00255 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.2e-05     0.057     102     153 ..     176     226 ..     136     227 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.2e-05
   TIGR00255 102 egEinlvDvlrlkgvvevqEedlqqdaiealllaaleealkdfiemRekEGe 153
                  +E + +D l+ +++v v   +  ++++   + +ale a++df  m   EGe
  MMETSP1174-20130828|7105_1 176 ASESDYIDALKAHHAVMVGAMKC-KQQVDPTVADALEHAVDDFSRMYVPEGE 226
                 57999**************9999.889*******************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 809.77
//
Query:       MMETSP1174-20130828|7116_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.1   4.5      0.038   12.3   2.5    1.4  2  TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain


Domain annotation for each model (and alignments):
>> TIGR04085  rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.5   9.3e-06     0.038      55      83 ..      10      39 ..       1      48 [. 0.74
   2 ?   -1.9   0.0      0.24     1e+03      24      32 ..      50      58 ..      41      63 .. 0.43

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.3e-06
   TIGR04085 55 k.lekeeCkkCkalplCgGgCpaealeeeg 83
                + l+   C+ C++ ++C+  C+++ +  ++
  MMETSP1174-20130828|7116_1 10 QgLKFRLCSACRLVKYCSRDCQKRDWPAHK 39
                3467889***************99876655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.24
   TIGR04085 24 eeyklgnir 32
                ++++  +i+
  MMETSP1174-20130828|7116_1 50 KKFEAEKIQ 58
                333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|7113_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-13   48.0  40.4    2.1e-11   42.0   7.9    3.5  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.016        66     109     138 ..      25      54 ..      22      56 .. 0.84
   2 !   42.0   7.9   5.1e-15   2.1e-11       2     112 ..      69     179 ..      68     222 .. 0.87
   3 !   14.6   9.8   1.4e-06    0.0058       4     133 ..     298     433 ..     295     437 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.016
   TIGR00880 109 vlaqalgwralflilallallafilllfll 138
                 ++a+ + w ++++i++++ ++  il   l+
  MMETSP1174-20130828|7113_1  25 AVAKRWDWAVILWIVMVGDMARGILFPTLW 54 
                 678899***********9999988876666 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 5.1e-15
   TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.q 112
                   +a++  g ++ spl g +++  G+k +l+++ ++ +++++l + + +i +li++ i +Gfg++  l ++++ +a  +++ er+ a+++lsa++++g+ + p++G++l  +
  MMETSP1174-20130828|7113_1  69 FTVAAFSFGRAISSPLWGQFSNMKGYKVPLIFSKCTTAVGAILYIRADSIFTLILSQICIGFGSGS-LGVTRSWVAANSSKSERTTAMATLSAMQFFGFTVTPFFGSALSlA 179
                 67999*********************************************************9885.6677899**********************************9862 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 1.4e-06
   TIGR00880   4 lagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals......snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafil 133
                 + +++l+     +++   t+r+  ++++l glf ++l+ ++++ +      s +   i    + ++g+ +  +++ +l+++++ ++  +  +g++ ++ a + i+ p+l + ++q+lg  +lf+ila+  l++++ 
  MMETSP1174-20130828|7113_1 298 VSIFGLVGTAQLLFFVCYTSRFKDTQLILAGLFAMLLACIVMVHGerinlsSEVCYVIAILSIYACGYPVGNTSALGLFSKAAGSQPQGLLMGIFGSAGAGARIVFPILAGTIVQYLGSNVLFIILAICTLVTILF 433
                 6666766666667777789***********************988777665566666666678899************************************************************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1635.20
//
Query:       MMETSP1174-20130828|7118_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 839.07
//
Query:       MMETSP1174-20130828|7119_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-14   50.2   9.1    3.4e-14   50.2   6.3    3.1  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      1e-06   26.2   2.6      1e-06   26.2   1.8    1.9  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.3e-05   22.8   0.8      0.028   12.0   0.0    3.3  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.013        18     181     227 ..      10      56 ..       3      64 .. 0.86
   2 !   50.2   6.3   2.5e-17   3.4e-14      47     215 ..      60     226 ..      49     366 .. 0.76
   3 ?   -3.2   0.6      0.37   5.1e+02      63      90 ..     464     491 ..     449     517 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.013
   TIGR00990 181 edttaaleldpdyvkalnrranaydqlgkyadalldltassliddfr 227
                  d t+  e+ p + k + r+ +a   lg+  da+   +a   id+ +
  MMETSP1174-20130828|7119_1  10 VDGTRCTEIAPTWAKGFTRKGAAECALGRLDDAFASYSAGLSIDGSN 56 
                 57899999**************************9999987777765 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 2.5e-17
   TIGR00990  47 vigagvvyylrkgqeqkeskpklskkerrkrkdaekeaekkaeekkstapkaaavesadelpeidessvvnl.seeerkkyaaklkekGnkayrnkdfdkaielyskalllkedP.vyysnraacynaladle.kvvedttaaleldpdyvkalnrranaydqlgkyadall 215
                 v g  +v   r++++q +s  + +         ++++  +k+++    ++ +  ve +    e d s   +l +++e k  aa+lk +G+ a+r+k   +a++ ys+a+ l +d  v ysnr+a y + +d + k + d+ +  el pd+ k   r  +a   l+++  a+ 
  MMETSP1174-20130828|7119_1  60 VSGLKYVTGRRQKKQQEDSDTT-TAAATSTEAGSDQDGSNKTKKG---ESASGEVEHVIR-IETDSSGGKELeTNDEWKTQAAELKALGDTAFREKRLSDAVQHYSQAIDLDPDNhVLYSNRSAAYLSQGDAKsKALVDARRCQELRPDWPKSYVRLGAAEHALTRFDAAIA 226
                 4455555555555555444444.4444444444444444433333...334455666654.36677766666478999***********************************9559**************87578999****************************98874 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 0.37
   TIGR00990  63 keskpklskkerrkrkdaekeaekkaee 90 
                  es+   s+k  r++ d  k++ k+ +e
  MMETSP1174-20130828|7119_1 464 TESHLATSRKRERDQEDEAKATAKAEAE 491
                 3455555566666666666666663333 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.17   2.4e+02      87     119 ..     276     308 ..     250     336 .. 0.62
   2 !   26.2   1.8   7.5e-10     1e-06       3      73 ..     351     423 ..     349     491 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.17
   TIGR02349  87 sefgdigdifeeffgggggsgrrrskarrgedl 119
                  + ++ gdi+  ff++  + +++r +++r+++ 
  MMETSP1174-20130828|7119_1 276 LKESMSGDIIAGFFDDLDEDQEKRAEEKREREA 308
                 334456777777777666544444444444333 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 7.5e-10
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekra.qYDqfghaglegg 73 
                 Y++  ++ dA+ e+ik  Y+k++   HPD+n +   +a++ f e ++Aye L de  r+ + D + + ++  +
  MMETSP1174-20130828|7119_1 351 YHVFQLDIDATVEDIKFRYKKISILVHPDKNLDrVGDAQASFEECKQAYEKLMDEPSRDkAIDVIERTRAATE 423
                 89999999***********************9845689***************99887514565554444443 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.13   1.8e+02      59      87 ..      30      58 ..      20      93 .. 0.85
   2 !   12.0   0.0     2e-05     0.028      56     104 ..     140     188 ..     126     207 .. 0.86
   3 !    7.1   0.0   0.00067      0.91      56      86 ..     209     239 ..     203     249 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.13
   TIGR02552 59 aaclqalkeyeeAiaaYalaaaldlddpr 87
                +a+  al++ ++A a Y++ +++d ++++
  MMETSP1174-20130828|7119_1 30 GAAECALGRLDDAFASYSAGLSIDGSNAA 58
                6777899999********99999977765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2e-05
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekee 104
                  +L+ +  + k+ ++A++ Y+ a  ld+d+++ +  ++  +l  g+ ++
  MMETSP1174-20130828|7119_1 140 KALGDTAFREKRLSDAVQHYSQAIDLDPDNHVLYSNRSAAYLSQGDAKS 188
                 68999999*******************************9999988764 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00067
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddp 86 
                 ++L+a+ +al +++ Aia+Y+  + +d+ ++
  MMETSP1174-20130828|7119_1 209 VRLGAAEHALTRFDAAIATYKNGLRMDPGNA 239
                 68********************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2077.89
//
Query:       MMETSP1174-20130828|7123_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|7126_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   16.3   3.4     0.0024   16.1   2.4    1.1  1  TIGR02501 type_III_yscE: type III secretion system protein, YseE family


Domain annotation for each model (and alignments):
>> TIGR02501  type_III_yscE: type III secretion system protein, YseE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.4   5.9e-07    0.0024      11      49 ..       8      46 ..       5      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.9e-07
   TIGR02501 11 adtaanalierLeaalaeikeqlsrggdpqqYqelqlla 49
                a+ +++  +erL+aa++++++q ++ + ++++ ++  + 
  MMETSP1174-20130828|7126_1  8 AERERQGKRERLSAAENKLRKQAKKTQAAENRAKIRAQV 46
                56678999***********************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|7124_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   17.6   0.0     0.0012   16.6   0.0    1.6  1  TIGR01915 npdG: NADPH-dependent F420 reductase
     0.0024   15.0   0.4     0.0041   14.2   0.2    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
     0.0076   12.9   0.0      0.014   12.0   0.0    1.3  1  TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.1e-07    0.0012      57     120 ..     462     525 ..     418     576 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.1e-07
   TIGR01915  57 veGleneeaAkradvvilavpldavlktleslkeeleadklvisavvplasagekavrylkpee 120
                 +  ++     ++ dv +++v + +  kt++sl+ +l+++klv++    l+s+g++++  + p++
  MMETSP1174-20130828|7124_1 462 IPKFQLRSVMDQLDVLVVSVGAIHFEKTIQSLAGDLSSGKLVVDLHGTLKSKGKQTMLRTLPKD 525
                 4455556677889**************************************9888877776766 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2     3e-06    0.0041     145     227 ..     411     491 ..     388     509 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-06
   TIGR02853 145 tdftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarile.lglepvelkeleekvaeiDivintiPalvltkdvl 227
                 t + + + +v+v+G+G  G+ +a ll   g +  v a  + d+a i e +g+e ++  +l++ + + D+++  + a+  +k + 
  MMETSP1174-20130828|7124_1 411 TAQPMKKLKVAVIGFGVPGQRLASLL---GKHADVVAVGQSDQAAIAEkMGIEFIPKFQLRSVMDQLDVLVVSVGAIHFEKTIQ 491
                 456678889************99876...555566666666667666537788899999************9999987776553 PP

>> TIGR01268  Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   9.9e-06     0.014      15      55 ..     268     308 ..     261     322 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.9e-06
   TIGR01268  15 aklslifslkeeagalaevlklfkekdvnlthiesrpsksk 55 
                 ak++l f +++  g+l ++l+ f  +d++l++ esrps  +
  MMETSP1174-20130828|7124_1 268 AKTTLFFLMRNGPGSLFRALACFALRDLDLSKCESRPSSVQ 308
                 789**********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.46
# Mc/sec: 2097.48
//
Query:       MMETSP1174-20130828|7120_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1436.35
//
Query:       MMETSP1174-20130828|7125_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|7131_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2260.31
//
Query:       MMETSP1174-20130828|7134_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.8   0.2       0.02   11.7   0.1    1.0  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.9e-06      0.02     157     219 ..      16      80 ..       3      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.9e-06
   TIGR02668 157 vlkglneeevkellelaaeeegailqliElepeeege..kelkkyaidikeieeeleekadkvet 219
                 +  g ++ +  +l+++++e+++ ++  iE+ + ++g   ++l++  i+ +++e+++++k ++  t
  MMETSP1174-20130828|7134_1  16 IPVGNTVASAFNLVKTTTESTKIDISAIEFAALNNGLkeQQLQEIVIPTDNVEADIANKQQELLT 80 
                 55677888899********************999987668899**************99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1174-20130828|7135_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 152.30
//
Query:       MMETSP1174-20130828|7133_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 860.37
//
Query:       MMETSP1174-20130828|7137_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-49  161.2   1.2    2.8e-05   21.9   0.0   12.1 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0006       2.5       7      27 ..      91     111 ..      87     115 .. 0.86
   2 !    8.7   0.0    0.0001      0.43       2      26 ..     159     183 ..     158     187 .. 0.84
   3 !   21.9   0.0   6.8e-09   2.8e-05       2      35 .]     266     299 ..     265     299 .. 0.96
   4 !   11.9   0.0     1e-05     0.041       1      24 [.     300     323 ..     300     327 .. 0.94
   5 ?    0.4   0.0     0.045   1.9e+02       6      32 ..     342     369 ..     337     372 .. 0.75
   6 !   20.1   0.0   2.5e-08    0.0001       1      27 [.     373     399 ..     373     409 .. 0.88
   7 !   15.0   0.0     1e-06    0.0042       1      35 []     410     444 ..     410     444 .. 0.95
   8 !   14.9   0.0   1.2e-06    0.0048       2      34 ..     446     478 ..     445     479 .. 0.96
   9 !   18.2   0.1   9.8e-08    0.0004       1      27 [.     480     506 ..     480     508 .. 0.95
  10 ?    0.4   0.0     0.045   1.9e+02       1      30 [.     590     619 ..     590     624 .. 0.90
  11 !   11.4   0.0   1.4e-05     0.058       7      35 .]     703     731 ..     701     731 .. 0.92
  12 !   14.4   0.0   1.6e-06    0.0067       2      31 ..     733     762 ..     732     763 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0006
   TIGR00756   7 isglckagrveeAlelfdeMk 27 
                 ++ +++a++++ Al+l++e+k
  MMETSP1174-20130828|7137_1  91 VKICVRANKIDTALDLMREIK 111
                 678***************986 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0001
   TIGR00756   2 tyntlisglckagrveeAlelfdeM 26 
                 +++++i +++ka+r++  l  f+ +
  MMETSP1174-20130828|7137_1 159 AWTAVIQSCAKARRFKLSLLTFRAL 183
                 7**************9988887765 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 6.8e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 +yn+ i++ ++ag ++eAl +++eM+ +g++Pd+
  MMETSP1174-20130828|7137_1 266 AYNVAIKAAVEAGWISEALGFLEEMEGDGVKPDV 299
                 7*******************************96 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 1e-05
   TIGR00756   1 vtyntlisglckagrveeAlelfd 24 
                 vt ntl+ g+ +a+r++  lel++
  MMETSP1174-20130828|7137_1 300 VTINTLMAGCRRAKRWRTILELYE 323
                 799*******************98 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.045
   TIGR00756   6 lisglckagrveeAlelf.deMkergiv 32 
                 ++ + c+ gr+++A +    eM + gi+
  MMETSP1174-20130828|7137_1 342 VLQAQCQLGRFRDAQQTHtSEMDRLGIS 369
                 77888*******9977777777777765 PP

  == domain 6    score: 20.1 bits;  conditional E-value: 2.5e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                 vty++li++++k g++ +A++l  +++
  MMETSP1174-20130828|7137_1 373 VTYSILIDACAKGGNWQHACSLIADLE 399
                 7********************998775 PP

  == domain 7    score: 15.0 bits;  conditional E-value: 1e-06
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 +++++ is++  +g++  A++l+ +Mk +g++P++
  MMETSP1174-20130828|7137_1 410 YSFTSAISACRPSGNWLQARSLMAQMKLQGCRPNI 444
                 689999***************************95 PP

  == domain 8    score: 14.9 bits;  conditional E-value: 1.2e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ty++ is ++   +++ Al l+++M++++i+P+
  MMETSP1174-20130828|7137_1 446 TYTAAISTCVVPQKLDWALMLWNDMEANDIKPN 478
                 9*******************************9 PP

  == domain 9    score: 18.2 bits;  conditional E-value: 9.8e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                 ++ynt+++ +++ g+v  Al +f++M+
  MMETSP1174-20130828|7137_1 480 YAYNTMLRVYAEVGDVANALHFFRRMV 506
                 68************************6 PP

  == domain 10    score: 0.4 bits;  conditional E-value: 0.045
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkerg 30 
                 +t+++l+    +a+++  Al +++ M++++
  MMETSP1174-20130828|7137_1 590 YTFSALLTLAQRAKDLPLALGILETMVAQK 619
                 69999999999***************9875 PP

  == domain 11    score: 11.4 bits;  conditional E-value: 1.4e-05
   TIGR00756   7 isglckagrveeAlelfdeMkergivPda 35 
                 +  l++ag+v  A+ ++++++e+g  P++
  MMETSP1174-20130828|7137_1 703 VELLARAGDVASAVTVLRSIEEQGYLPNE 731
                 5679***********************96 PP

  == domain 12    score: 14.4 bits;  conditional E-value: 1.6e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergi 31 
                 ty +++s++ +ag+++ ++ ++d+M+ +g+
  MMETSP1174-20130828|7137_1 733 TYVAVVSACERAGEWRMGVAILDSMRTKGL 762
                 9*************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 1982.37
//
Query:       MMETSP1174-20130828|7147_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-06   23.7   0.0      0.046   11.1   0.0    2.3  2  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.1e-05     0.046       1      33 [.      19      51 ..      19      70 .. 0.89
   2 !   10.3   0.0   1.9e-05      0.08     155     224 ..     174     244 ..     158     259 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
   TIGR01777  1 vlitGgtGliGralveelekkghevviltrske 33
                ++  G+tG +Gr+ ve+l  +g++v +l+r++ 
  MMETSP1174-20130828|7147_1 19 IVAVGSTGPLGRKFVEKLAGQGDDVLVLARNAY 51
                5678**************************976 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1.9e-05
   TIGR01777 155 vrvvllRtgivLgekGGalakllllfklglggklGsGr.qwlsWihleDlvklilfalene.evsGvvNata 224
                 ++v+ lR+g vL+ +    ++ ++   ++ g + G  r  + +W+h++D+ +++ +a++ +  +sG+  +t 
  MMETSP1174-20130828|7147_1 174 TQVTNLRLGRVLSLDT-DAQEATRYKAMYYGVTEGISRvPCRPWVHVDDALNAVDQAISGAlGLSGACEFTV 244
                 6788999999999999.5567777788888888887762578*************99986536777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1228.86
//
Query:       MMETSP1174-20130828|7152_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|7154_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1130.71
//
Query:       MMETSP1174-20130828|7153_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1339.30
//
Query:       MMETSP1174-20130828|7155_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1573.97
//
Query:       MMETSP1174-20130828|7161_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-78  262.5   0.0    1.7e-78  262.2   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    8.8e-57  190.6   0.0    1.1e-56  190.3   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.7e-53  179.8   0.0    2.2e-53  179.4   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.2e-49  165.7   0.0      4e-49  165.4   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.2e-47  159.8   0.0    2.8e-47  159.4   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      4e-47  158.6   0.0    4.9e-47  158.4   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      1e-44  150.3   0.0    1.3e-44  149.9   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      1e-42  144.4   0.0    1.3e-42  144.0   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.8e-42  143.2   0.0    3.4e-42  142.9   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.5e-42  142.6   0.0    4.4e-42  142.3   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-40  137.5   0.0    1.5e-40  137.2   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.6e-40  136.2   0.0    3.1e-40  135.9   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-37  127.2   0.0    1.8e-37  126.9   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.1e-31  107.0   0.0    2.6e-31  106.7   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.7e-27   92.5   0.0    1.8e-26   90.8   0.0    1.6  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.7e-25   87.2   0.1    4.5e-24   83.2   0.1    2.0  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.1e-25   86.0   0.1    1.6e-11   42.1   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-24   84.4   0.0    2.2e-12   44.7   0.0    2.0  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.2e-23   80.9   0.3    9.8e-22   75.5   0.2    2.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.8e-23   80.5   0.2    9.9e-13   45.7   0.0    2.0  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.1e-22   76.1   0.1      3e-14   50.6   0.0    2.0  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.6e-22   76.2   0.0    3.7e-13   47.3   0.0    2.0  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.9e-21   74.4   0.0    2.5e-11   41.3   0.0    2.0  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.3e-21   73.7   0.4    9.9e-11   39.3   0.0    2.0  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.7e-21   73.4   0.6    1.6e-10   38.5   0.1    2.0  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.4e-20   71.6   0.1      6e-11   40.1   0.0    2.1  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.9e-20   71.1   0.1    2.9e-19   67.1   0.0    2.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.8e-20   70.2   0.2    3.8e-11   40.7   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.8e-19   66.4   0.4    8.1e-18   62.4   0.3    2.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.6e-18   64.3   0.0    6.8e-12   43.3   0.0    2.0  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.4e-18   63.2   0.0    4.8e-11   40.3   0.0    2.0  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.6e-18   62.7   0.1    1.1e-09   35.7   0.0    2.3  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      5e-17   60.0   0.1    1.1e-15   55.5   0.1    2.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.5e-16   58.2   0.3    3.3e-15   53.8   0.2    2.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.4e-15   55.4   0.0    2.4e-08   31.7   0.0    2.0  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.7e-15   53.8   0.2    1.2e-08   32.5   0.1    2.0  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.5e-15   53.2   0.0    3.5e-08   31.0   0.0    2.1  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-14   52.1   0.2    2.1e-13   48.2   0.2    2.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.1e-14   50.3   0.1    1.8e-06   24.7   0.0    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.6e-14   50.3   0.3    7.9e-09   32.7   0.0    2.0  2  TIGR01288 nodI: nodulation ABC transporter NodI
    4.2e-14   50.5   0.1    1.7e-12   45.3   0.1    2.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.3e-13   46.5   0.4    9.5e-09   32.1   0.0    2.0  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.6e-13   47.1   0.7    5.1e-08   30.6   0.1    2.1  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.4e-12   43.2   0.0    1.6e-12   42.9   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    2.6e-12   44.7   0.0    7.6e-07   26.8   0.0    2.0  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.8e-12   43.4   0.2    1.5e-05   22.3   0.0    2.0  2  TIGR01978 sufC: FeS assembly ATPase SufC
    6.5e-12   43.5   0.1    2.1e-08   32.0   0.0    2.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-11   41.8   0.2    2.9e-06   23.8   0.1    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-11   42.4   0.7      2e-10   38.6   0.5    2.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-10   38.4   0.0    7.7e-09   32.5   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
      2e-10   37.6   0.0    3.3e-10   36.9   0.0    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    5.8e-10   36.2   0.1    2.8e-09   33.9   0.1    1.7  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    5.8e-10   36.9   0.0    1.6e-09   35.5   0.0    1.6  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.8e-10   36.8   0.0    0.00051   17.4   0.0    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.8e-08   30.2   0.2    1.2e-05   22.2   0.0    2.0  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.9e-05   18.9   0.2    0.00032   16.2   0.0    1.8  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0001   18.5   0.6      0.017   11.1   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0081   13.0   0.0      0.013   12.3   0.0    1.2  1  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
  ------ inclusion threshold ------
      0.015   12.4   0.0      0.023   11.7   0.0    1.3  1  TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
      0.035   10.1   0.0      0.047    9.6   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.2   0.0   2.5e-80   1.7e-78    1268    1510 ..       5     250 ..       2     259 .. 0.94

  Alignments for each domain:
  == domain 1    score: 262.2 bits;  conditional E-value: 2.5e-80
   TIGR00957 1268 wqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpd...kldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqr 1510
                  w  +   pp +wp+ g v + + s ryr+ l lvl+ ++v i    kvg+ grtg+gks+++  lfr+ e  +g i +dg +i+++ l  lr+k+t+ipqdp+lf+g lr  ldp + +sd  +w al+   ++++     +   +l+ +  eggenls gqrql+c+arall   ++lv+deat+ +d  td++iq+ +r  f+ ctv+tiahr++ti+ y +vlvld gev e+d p  l ++ 
  MMETSP1174-20130828|7161_1    5 WDGDVIVPPAAWPTDGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRP 250 
                  6667778*******************************************************************************************************************************998655432227*********************************************************************************************8776555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   0.0   1.7e-58   1.1e-56     463     685 ..      19     243 ..      15     250 .. 0.95

  Alignments for each domain:
  == domain 1    score: 190.3 bits;  conditional E-value: 1.7e-58
   TIGR03375 463 kGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpk...GldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpk 685
                  G ++l++vs +Y+ +   +Lk v + i   +kv++ Gr+GsGKst++kll +l+e ++G++ +dg di++++ ++lr++i ++pqd+ Lf+G lr  +  + + ++d+++ +a++ +G+ ++ +  ++   Gl+++i e+Ge+LS GQrq++ +aRall+ p++l++DE ts++D ++++ + + L+++ +  T++ ++Hr   +   d+++vld G +v  ++ 
  MMETSP1174-20130828|7161_1  19 DGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGA-FSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDP 243
                 68899**********************************************************************************************98766.9*****************99888733369**************************************************************************************976654 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   3.2e-55   2.2e-53     452     688 ..      18     257 ..      11     262 .. 0.95

  Alignments for each domain:
  == domain 1    score: 179.4 bits;  conditional E-value: 3.2e-55
   TIGR01846 452 lkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkq...GyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyakl 688
                  +G ++++++  ry++  p vl+ + + i++   +G+ G++GsGkst++kll rl   e G + +dg d++ ++ ++lr +++++ q+ +lf + +r  +  +  a s++++ +a    G +++ +   q   G et+++e G +ls Gqrq + +aral+  Pr+l++deats +d +++++i+  lr++ k+ tvi+iahr++t+   d++lvl+ G++ve    e+l ++ ++ +a l
  MMETSP1174-20130828|7161_1  18 TDGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPS-GAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRpGSAFAAL 257
                 5899*********************************************************************************************998755.68999****************9998833359******************************************************************************************9999998867888887 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   5.9e-51     4e-49     329     558 ..      19     249 ..      14     259 .. 0.91

  Alignments for each domain:
  == domain 1    score: 165.4 bits;  conditional E-value: 5.9e-51
   TIGR02203 329 rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpe...GldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlar 558
                  G v++ +v++ry+++   +l+++++++ +   v + Gr GsGkst+++ll R +e ++G i +Dg d+  ++L++LR++++++ qd +LF + +   +  +     ++a++ eal    ++ + +   +   Gl+t++ e g +Ls GqRq l +aRall    +L++Deats +D   ++ +q  L  + k  t + iahR+ ti   D+++vld+G++ve    e L +r
  MMETSP1174-20130828|7161_1  19 DGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPS--GAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANR 249
                 6999***************************************************************************************99887666554..458999999999988888887766652227***************************9999**********************************************************8766655555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   4.1e-49   2.8e-47     449     681 ..      19     257 ..      13     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 159.4 bits;  conditional E-value: 4.1e-49
   TIGR03797 449 sGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagle...eDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl..kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeG.lfael 681
                  G +++++v+ rY+++ plvL+ v + i +   v++ G  GsGKSt+ +lL+   + e G++  DG+d+++++++ +R ++ ++ Q+  l++g +  ++  +  ++  + wea+  +g+    e   +   gl T i egg++lS GQrQ l +Aral + Pr+l++DEATS +D +t +++   l  +  + t i iAHR+ Ti   d++lvl++G+vve    e L+++ G +fa+l
  MMETSP1174-20130828|7161_1  19 DGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARIWEALDCVGMRayfEGTAQGGGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVfkACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGsAFAAL 257
                 5999******************************************************************************************************************98222445567789******************************************************98644578999*********************************999457766 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.0   7.1e-49   4.9e-47     475     708 ..      19     257 ..      10     259 .. 0.92

  Alignments for each domain:
  == domain 1    score: 158.4 bits;  conditional E-value: 7.1e-49
   TIGR03796 475 sGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaih...dvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakeg.aYarL 708
                 +G v+l++v+  y +  + +++++++ + + ++v + G  GsGkst+akl+  l e  +G+i +Dg + ++++ ++l++ ++++ qd +lf+g +r  l   + + +++++ +A+    ++   +  ++  gg+e+++ egg+nls Gqrq l +ARaL + P +L++DEats +D +t+k+i+  lr   + ct+i +aHR+ ti   d+++vl+ G+vve    e l+++ g a+a+L
  MMETSP1174-20130828|7161_1  19 DGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDP-SGAFSDARIWEALDCVGMRayfEGTAQGGGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDvfKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGsAFAAL 257
                 799*********************************************************************************************99974.6789999999998766555111445667799*******************************************************7668*******************************99999999776246655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   1.9e-46   1.3e-44    1211    1439 ..      15     247 ..       9     261 .. 0.95

  Alignments for each domain:
  == domain 1    score: 149.9 bits;  conditional E-value: 1.9e-46
   TIGR01271 1211 iwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllst.egeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvie...qfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkll 1439
                   wp++g + + +++a+y  +   vl+ +   +    +vg+ grtgsgkst+   l+rl++  +g i++dg     v l + r  + +ipq  ++++g +r  ldp   +sd  iw   + vg+++  e   q  + l+ ++v+gg  ls g +ql+c+ar++l   ++l++de ++ +d  t ++i+  l++ f  ctvi   hr+++++  ++ lv++  +v +yd  + l 
  MMETSP1174-20130828|7161_1   15 AWPTDGVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVeDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARIWEALDCVGMRAYFEgtaQGGGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLA 247 
                  7*********************************************************986369**************************************************************9855566789******************************************************************************************9866555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0     2e-44   1.3e-42     333     557 ..      17     242 ..      11     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 144.0 bits;  conditional E-value: 2e-44
   TIGR02204 333 kvrgeiefeevkfay.ParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpe...GydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGt 557
                 ++ g +++ +v+ +y P+ p  ++l+g+d+++ +  +v + G +G+Gkst+ +ll r  + ++G+i +dG d+  ++ + lr+++ ++pqd+ lfa+  +  +       sd+++ +a +      + +   +   G +t++ e g +Ls Gq+q + +ara+l+  ++L++deats +d ++++++q+ l  + k  t + iahr+ t+   d+++vld G++ve   
  MMETSP1174-20130828|7161_1  17 PTDGVVRLSKVSARYrPSLP--LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDP-SGAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDD 242
                 678999********944444..89************************************************************************998777653.33468999999999999888888777633369***************************************************************************************9765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.0   4.9e-44   3.4e-42     321     529 .]      21     232 ..       8     232 .. 0.92

  Alignments for each domain:
  == domain 1    score: 142.9 bits;  conditional E-value: 4.9e-44
   TIGR02857 321 slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpq...gleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                  ++l++vs +y+ +   +lk+v++ ++  ++v+++G  G+GKst+ kll +++e+++G+i+++g +++ ++ +++r++i+ +pQ P+lf+g ++  +  +    s+a + eal+ +g+    +   q   glet+i e+g++LS+Gqrq l +Arall+  ++l++DE t+++D +t++ ++  lr+++++ tv+ +aHr  ++ ++dk++vl
  MMETSP1174-20130828|7161_1  21 VVRLSKVSARYRPSLpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPS-GAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVL 232
                 7999*******6666599****************************************************************************999865.45678889****9999998877665522279******************************************************************************986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   0.0   6.5e-44   4.4e-42     475     699 ..      23     250 ..      17     259 .. 0.89

  Alignments for each domain:
  == domain 1    score: 142.3 bits;  conditional E-value: 6.5e-44
   TIGR01193 475 evndvsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklpl...GyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk.lkdktiifvahrlsvakksdkiivldeGkiieqGshkellken 699
                 ++++vs +y  + + vl+ +++ i k++k+ + G +GsGkst+akll ++ + e+G+i+++g +++ ++ ++lr  i+ +Pq+P++f+G +     l+     s+ +i++a++ + +++  e   +   G++t++ e + ++s+Gq+q l++arall   +vl++de+tsn+d  t+k i   l   +k  t+i +ahr++     dk++vld G+++e  + + l ++ 
  MMETSP1174-20130828|7161_1  23 RLSKVSARYRPSLPlVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYS--LDPSGAFSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDvFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRP 250
                 566666666655432899************************************************************************9655..6888999******************9998844359*********************************************998887777625789****************************88777776665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   2.1e-42   1.5e-40     335     529 ..      22     219 ..       9     220 .. 0.93

  Alignments for each domain:
  == domain 1    score: 137.2 bits;  conditional E-value: 2.1e-42
   TIGR02868 335 lelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLp...dGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++l+++s++y  + + vlkgv++ +++ ++v v G++G+GKst+++ll++l++ ++G++ +dg++++ ++ s +r  +++++qd+ lF+  +r  l    +  +d+ +++aL  vg+  + +      +Gl+tk+ egg+ lS+G+rq l +ARaLl+  +vl++DE t ++D +t + + ++L+++ +  tv+ ++hr
  MMETSP1174-20130828|7161_1  22 VRLSKVSARYRPSLPlVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDP-SGAFSDARIWEALDCVGMRAYFEGTAqggGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHR 219
                 7899*********999******************************************************************************9984.5678***************999875422268*********************************************9988888888*************7 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   4.5e-42   3.1e-40     475     709 ..      18     256 ..      11     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 135.9 bits;  conditional E-value: 4.5e-42
   TIGR00958 475 leGkveFqdVsFsYPsrpdkp.vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekg...ydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykq 709
                   G+v+ ++Vs  Y  rp+ p vlk+    +   + v + G  GsGKSt+a ll +l + + G++ +Dg +++ ++   l++k++++ q+P+lf+g +r  +        d+++  a    +   + ++  +g    +t++ e G+ ls+Gq+q + +ARAL+  PrvL++DeAtS +D ++++++q+     +k  tv+ iahr+ t+   dk+lvl  g+vve  + + L ++++ ++++
  MMETSP1174-20130828|7161_1  18 TDGVVRLSKVSARY--RPSLPlVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPS-GAFSDARIWEALDCVGMRAYFEGTAQGgggLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTmlRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGsAFAA 256
                 57999999999999..7777659*************************************************************************998554432.2345899999999999999999998866669**************************************************976677899*****************************98888888877766665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0   2.7e-39   1.8e-37     315     535 ..      20     241 ..      13     248 .. 0.92

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 2.7e-39
   TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpk...GYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafG 535
                 g +++++vs++   +   +lkg+++++ + + +++ G  gsGks++a+ll   ++ + G++++Dg+d+++++  tl  +i  +Pqd  Lf+G +   +   +  + + ++ ea    g+        +   G +t+i egG++Ls+Gqrq + +aRal  +P+++v+De  +n+D + ++ + + l ++  + +tv++i+hr+  +   dk+lvl++G++ ++ 
  MMETSP1174-20130828|7161_1  20 GVVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGA-FSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDV-FKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYD 241
                 678888999888888889********************************************************************************99999.9999******9999987776666522279**********************************************9988888887.5689*************************99885 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   3.7e-33   2.6e-31     362     567 ..      50     258 ..      19     265 .. 0.91

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 3.7e-33
   TIGR01192 362 qtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgreda.tdeevveaakaaaasdfiekrlk...gydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgr.fakll 567
                   v + g tg+gk+t+  ll r+ + + g i +dg di+ v+  +lr  i+ + qd  l+   +r  +     +a +d+ + ea ++   + + e   +   g +t++ e g++ls g+rq l +ara+l    +lv+deats +d  t+  ++  +  + k  t + iahr+ t+   d vl ld g ++e    + l+++ g  fa+ll
  MMETSP1174-20130828|7161_1  50 SKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLD--PSGAfSDARIWEALDCVGMRAYFEGTAQgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGSaFAALL 258
                 568999**********************************************************98665..444438999*******999999998876222589***************************9********************************************************************9885388887 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   2.7e-28   1.8e-26      16     234 ..      38     250 ..      22     256 .. 0.88

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 2.7e-28
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeivees.Lkkaalw.devkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekp 234
                 +lk v++ i+k++ +++ G +G+Gkst+ + l rl ++      +G++ ++g di    ++  +lr+k+ m+ q p  f+  +   +  +   ++ +  ++ld +  ++  +++a     +++k+ + + +Ls Gq+q lc+aral   P vl++De ts +D  + + i+ +++++ k  t++ + h ++  +   dk+ ++  Ge+ve++++e + ++p
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVE-----DGTIEMDGYDISR--VELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARIWEALDCVGMRAyFEGTAQGgGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDT-IVWYDKVLVLDAGEVVEYDDPEVLANRP 250
                 899*********************************998.....8**********75..69999***************98888777777777777777788777555414444443146899*******************************************************************86.5678*****************9998887 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.1   6.5e-26   4.5e-24       1     214 [.      21     235 ..      21     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 6.5e-26
   TIGR00960   1 mikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsd..rtvyd.nvalalriiGvkgreieervs...aalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                 ++++++vs +y+ +  l l++v v i+k + v + G +G+Gkst+ kl+    +   G i + g+d++++   e++ lr +i ++ qd  l+    r  +d   a++   i    + +  r+    +a    Gl+ k  +   +ls G++q +++ara+++ P +l+ de t+n+d ++ + i  +l++v +a  tv+  +h ++ +  +  +vl+l+ G
  MMETSP1174-20130828|7161_1  21 VVRLSKVSARYRPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRV---ELSTLRSKITMIPQDPILFAGplRYSLDpSGAFSDARIWEALDCVGMRAYfegTAQGGGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA-CTVITIAHRIDTIVWYD-KVLVLDAG 235
                 689****************************************************************987...6899***********999875223444424566655555555555555431114556789*********************************************************987.57777788888887665.56777776 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.5e-13   1.7e-11       1      89 [.      21     107 ..      21     112 .. 0.92
   2 !   42.1   0.0   2.4e-13   1.6e-11     126     199 ..     150     222 ..     145     236 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 2.5e-13
   TIGR02673   1 iielekvskeyaagv.eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfk 89 
                 +++l+kvs +y  +   +Lk v++ i k + + + G+ G+Gk+t+ kll+   + + G++e++g d++r+   el++lR ki+++ qD  
  MMETSP1174-20130828|7161_1  21 VVRLSKVSARYRPSLpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRV---ELSTLRSKITMIPQDPI 107
                 689********9765268************************************************9987...6899**********965 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 2.4e-13
   TIGR02673 126 gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeel 199
                 gle k+ +  e+ls G +q   +aRa+++ P++l+ De t n+D ++ + i ++l+++ k+  tvi  +h  + 
  MMETSP1174-20130828|7161_1 150 GLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKAC-TVITIAHRIDT 222
                 799999999************************************************99875.56666676554 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   4.6e-12   3.1e-10       2      87 ..      22     105 ..      21     110 .. 0.88
   2 !   44.7   0.0   3.3e-14   2.2e-12     136     233 ..     152     246 ..     148     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 4.6e-12
   TIGR02315   2 levenlskvy.pngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqe 87 
                 ++++++s +y p+   +lk v++ i k   v+v G+ G+Gkst+ + + rl+e ++g+i+++g+++++    el +lr+ki+mi q+
  MMETSP1174-20130828|7161_1  22 VRLSKVSARYrPSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISR---VELSTLRSKITMIPQD 105
                 567777777733445799************************************************95...57999999*****997 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 3.3e-14
   TIGR02315 136 aelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                 + +  +  ++Ls Gq+q + +aRal++ p++++ DE ++ +D ++ k++  +l+++ k    tvi   H++d    y d+++ l age+v ++ ++ l
  MMETSP1174-20130828|7161_1 152 ETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIVWY-DKVLVLDAGEVVEYDDPEVL 246
                 5566667799**********************************************975..6778888****98766.99**********87777765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.2   1.4e-23   9.8e-22      25     232 ..      37     240 ..      23     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.4e-23
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrs.............evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                  vl++v++ + +   v++ Gr+G+Gkst+a+ll  l + ++G++   G d+++++ +   ++r ++ ++ qd i             + Plr   + + +   ari e l+ v++r+              ++    ++ls Gq q +++aral   P+++v+dea sn+d +    i  +l+++ ++   +++ i+h +  +    ++vlvld G++ve 
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELS---TLRSKITMIPQDPIL-----------FAGPLRYSLDPSGAFSDARIWEALDCVGMRAyfegtaqggggleTKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKAC--TVITIAHRIDTIV-WYDKVLVLDAGEVVEY 240
                 59************************************************9998866...67889*******875...........45556655555555556666666666655542211111111111445556799*******************************************9987764..67899****9886.569***********96 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.1e-10   7.6e-09      10      83 ..      40     109 ..      34     117 .. 0.88
   2 !   45.7   0.0   1.4e-14   9.9e-13     128     225 ..     160     254 ..     148     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.1e-10
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialf 83 
                 + vd+ i +   + + G +GsGkst+ +ll rl+e   G i +dG di  ++   l    r ki+m+ q+  lf
  MMETSP1174-20130828|7161_1  40 KGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTL----RSKITMIPQDPILF 109
                 6677778888888899******************************9988888887....99****99986665 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 1.4e-14
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225
                 ++ls G++q + +aral   P +l+mdea s +d  + + +q  l ++ k    t++ i+h +d      d++ +l aGe+v    P+ + + P   +
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTI-VWYDKVLVLDAGEVVEYDDPEVLANRPGSAF 254
                 78********************************************99876..59********975.578*****************98888888776 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   6.8e-08   4.6e-06      20      90 ..      38     105 ..      21     112 .. 0.87
   2 !   50.6   0.0   4.4e-16     3e-14     138     225 ..     159     243 ..     149     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 6.8e-08
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqh 90 
                  l+ v++ +pk   +gv g +g+gkst+ + +  l +  +g++ +dg d+++    el + r +i mi q 
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISR---VELSTLRSKITMIPQD 105
                 5899****************************99999***********9865...5788889999999886 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 4.4e-16
   TIGR02314 138 psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtv 225
                   nls gq+q + +aral   p+vl+ deats +d  t + i ++l+++ +    t++ i+h +d +    d+v v+d ge++e +  
  MMETSP1174-20130828|7161_1 159 GENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIV-WYDKVLVLDAGEVVEYDDP 243
                 67***********************************************985..7999*******986.57*************9864 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.9e-09   5.4e-07       5      75 ..      25      97 ..      21     111 .. 0.84
   2 !   47.3   0.0   5.4e-15   3.7e-13     123     219 ..     152     246 ..     136     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 7.9e-09
   TIGR03864  5 eglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar 75
                +++s +y  +   +l++v++ ++k + v + G  G+Gkst+ +ll rL+e ++g+i++ G+d++r + + l++
  MMETSP1174-20130828|7161_1 25 SKVSARYRPSlpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRS 97
                6677777665225899************************************************999888874 PP

  == domain 2    score: 47.3 bits;  conditional E-value: 5.4e-15
   TIGR03864 123 aeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaael 219
                 + +  e  ++L+ G+r+ + +arall +P++L++Deat  +D ++ +++++++r++   +  +v+   h +d +   d+++vl+ G+v+    ++ l
  MMETSP1174-20130828|7161_1 152 ETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVF--KACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVL 246
                 5555666689*********************************************99..77899999*********************987665555 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.3e-10   2.9e-08       3      83 ..      24     105 ..      22     111 .. 0.85
   2 !   41.3   0.0   3.6e-13   2.5e-11     129     215 ..     159     242 ..     151     250 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.3e-10
   TIGR03410   3 venlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqG 83 
                 ++++++ Y  s   vl++v++ ++k + v v Gr g Gk+t+ k l  l++v++G+ie++g di++++ +   ++ i+ +pq 
  MMETSP1174-20130828|7161_1  24 LSKVSARYRPSlpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELS-TLRSKITMIPQD 105
                 567778887773359**************************************************98754.466778888885 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 3.6e-13
   TIGR03410 129 gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaege 215
                 g +Ls Gq+q l +aRaL+  P++l++De t  i     k i+++++++ k    +++ + + +d  +   d++lvl+ Gevv+ ++
  MMETSP1174-20130828|7161_1 159 GENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIVW-YDKVLVLDAGEVVEYDD 242
                 558*********************************************9985..899999999997765.79**********98765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.4e-10   9.8e-09       9      75 ..      39     106 ..      36     110 .. 0.94
   2 !   39.3   0.0   1.4e-12   9.9e-11     123     219 ..     160     254 ..     151     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.4e-10
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqka 75 
                 ++gv++ +++ + +g+ G  G GK+t+ k+L  l++ ++Gt  + GyD+ r e +++R +i+++pq+ 
  MMETSP1174-20130828|7161_1  39 LKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRvELSTLRSKITMIPQDP 106
                 789**********************************************995678**********985 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.4e-12
   TIGR01188 123 ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkev 219
                 +++s G+r+ l +a++l++ P+vl +DE t+ +D +t ++i  +++++ k+  t++  +h ++ +    d+v ++d G+++  d pe L +r g+ +
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA-CTVITIAHRIDTI-VWYDKVLVLDAGEVVEYDDPEVLANRPGSAF 254
                 5689*******************************************9875.8999999*99887.567*******************999887766 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   9.1e-11   6.2e-09       3      82 ..      23     104 ..      21     108 .. 0.83
   2 !   38.5   0.1   2.3e-12   1.6e-10     137     222 ..     161     244 ..     154     250 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 9.1e-11
   TIGR03873   3 rlsrvsvrag..grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveq 82 
                 rls+vs r      l++++vdv  P+ +  g+ G  GsGkst+ +ll  l++ ++G+++++g d+  ++  +   +++++ q
  MMETSP1174-20130828|7161_1  23 RLSKVSARYRpsLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQ 104
                 67777766541134799***********************************************988877666666666666 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 2.3e-12
   TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppa 222
                  ls G+rq   +aral   P++l++de t  +d ++   + +++r+   +  tv+   h ++  +   d+v+vld+G vv   +p+
  MMETSP1174-20130828|7161_1 161 NLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDV-FKACTVITIAHRIDTIV-WYDKVLVLDAGEVVEYDDPE 244
                 69********************************************9.78899999999998765.66***********9877764 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.4e-09   9.5e-08      14      80 ..      37     105 ..      22     111 .. 0.82
   2 !   40.1   0.0   8.8e-13     6e-11     130     227 ..     161     255 ..     153     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.4e-09
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqh 80 
                  +l+ vd+ +++ s v++ G +GsGkst+ +++  l + + G+i ++G d++rv++   + +i ++ q+
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELStlRSKITMIPQD 105
                 5899*************************************************9875214566666665 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 8.8e-13
   TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepatafv 227
                 +ls Gqrq + +aral   p+vl++de  + +d +  k +++ lr + +   v t  ++h + +++   d++ vl+ G++ + + +e + ++p +af 
  MMETSP1174-20130828|7161_1 161 NLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVIT--IAH-RIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGSAFA 255
                 79*******************************************9988765544..445.55677889*************************9996 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   4.3e-21   2.9e-19       3     198 ..      56     256 ..      54     261 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 4.3e-21
   TIGR01187   3 GpsGsGkttlLrllaGleeldsGkilldgedvtevp..aekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpk.aeikervkeaLelvqleef....ak......rkp....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanefva 198
                 G +GsGk+t+ +ll  l e++ G i +dg d+++v   + + ++ ++ q+  Lf         a +L+    p  a  ++r+ eaL+ v ++ +    a+       k+    ++ls Gqrq + +ara+ + P++L++De+ s +D +  + +q+ l+++ +    tv+ ++h   + +   d++ vl  G+++  ++pe + + P + f+a
  MMETSP1174-20130828|7161_1  56 GRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVElsTLRSKITMIPQDPILF---------AGPLRYSLDPSgAFSDARIWEALDCVGMRAYfegtAQggggleTKIveggENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHR-IDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGSAFAA 256
                 899*****************************9985215566899*****9999.........556666666551456899******9999765222222222222344222257**********************************************996..688999995.578999*****************************98 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.4e-09   3.7e-07      19      73 ..      37      91 ..      21     102 .. 0.86
   2 !   40.7   0.0   5.6e-13   3.8e-11     130     220 ..     150     238 ..     148     239 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.4e-09
   TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls 73
                 vlkgv++ i k   v++ G +GsGkst+  ll  l +  +G+++++G ++s++ 
  MMETSP1174-20130828|7161_1 37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVE 91
                59***********************************************998764 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 5.6e-13
   TIGR02211 130 glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                 gle +i +   +ls G+rq   +aral++ P++++ de t+n+d +t k+i ++l+++ k+   +++ ++h ++ +   d+vl l  g+++
  MMETSP1174-20130828|7161_1 150 GLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIVWYDKVLVLDAGEVV 238
                 68899999999*********************************************99765..5789999*************99999875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.3   1.2e-19   8.1e-18       6     188 ..      37     221 ..      33     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.2e-19
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaa....dvdedvafgplnlGlseaeverrvrealaavdisgleerpt...hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                  vlkg+++ + + +++++ G+ G+Gkst+ + l  l+  + G++ +dG ++  sr +l +lr k++++ qdp   lfa     ++d   af+   +    + v  r     +a +  gle + +   + ls G+++ + +a a+   p+vl++de t+++d++  +++ ++lr + ++ + v+  +h +d
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDI--SRVELSTLRSKITMIPQDP--ILFAGplrySLDPSGAFSDARIWEALDCVGMRAYFEGTAQGGGGLETKIVeggENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACT-VITIAHRID 221
                 69**********************************************865..8****************99..4676511114445557777777777777777776666677777778877633358*********************************************998765.555567776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.3e-06   0.00016      20      91 ..      38     106 ..      25     113 .. 0.89
   2 !   43.3   0.0   9.9e-14   6.8e-12     130     219 ..     150     237 ..     128     238 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.3e-06
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqah 91 
                 vl+ +++ i +   v + G +GsGk t+  l+  l +v +G++++ g ++++    el  +r ki +i q  
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISR---VELSTLRSKITMIPQDP 106
                 7889999999999999****************************99988765...57889999999998875 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 9.9e-14
   TIGR02982 130 gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 gle ++    e+ls Gq+q + +aral + P++++ de t+ +d ++ + + ++l+++   +++t++ ++h    +   d+++ ++ G++
  MMETSP1174-20130828|7161_1 150 GLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVF--KACTVITIAHRIDTIVWYDKVLVLDAGEV 237
                 7888999999*********************************************9987..58****99998877778899999999976 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.4e-07   3.7e-05      16      88 ..      42     110 ..      28     118 .. 0.90
   2 !   40.3   0.0     7e-13   4.8e-11     126     221 ..     156     248 ..     149     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.4e-07
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFp 88 
                 vd+ +p +  +++ Gr GsGk+++ +l+  L+  ++g i++dg  +     ++ l++ + +++++ q+  LF+
  MMETSP1174-20130828|7161_1  42 VDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDI----SRVELSTLRSKITMIPQDPILFA 110
                 778899999**********************************754....3589999999****999999995 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 7e-13
   TIGR02142 126 eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevla 221
                     ++Ls G +q   ++RAlL +P++L+mDe  + +D +  k i   L+ + +  +  ++ ++H +d +    d+v+vl++G v     +e +++
  MMETSP1174-20130828|7161_1 156 VEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACT--VITIAHRIDTIVW-YDKVLVLDAGEVVEYDDPEVLAN 248
                 556689********************************************9999765..799******9975.7**********988777766655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     3e-08   2.1e-06       2      64 ..      23      87 ..      22     111 .. 0.86
   2 !   35.7   0.0   1.7e-11   1.1e-09     135     238 ..     150     250 ..     122     256 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3e-08
   TIGR03005  2 risdvtkrfgel..tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeql 64
                r+s+v+ r+      vl+g+++ + +  kv + G +GsGkst+ ++l+ l ++++G+i+++g  +
  MMETSP1174-20130828|7161_1 23 RLSKVSARYRPSlpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDI 87
                67777777765312599*******************************************99665 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.7e-11
   TIGR03005 135 GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkp 238
                 Gl  k  +   +ls Gq+q + +aral   p+vl++de+ts +d +  + + ++lr++ +    t++ ++h++       d+vl +d G +ve   p+ + ++p
  MMETSP1174-20130828|7161_1 150 GLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFK--ACTVITIAHRIDTI-VWYDKVLVLDAGEVVEYDDPEVLANRP 250
                 566666667789*********************************999999999999875..579999****9976.578*****************9988877 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   1.7e-17   1.1e-15      19     232 ..      38     256 ..      20     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 1.7e-17
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditr..lppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvgls...........gseeky...PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfva 232
                 +lk +++ + k   v + G  G Gk+t+ +++  L + + G+i ++g di+r  l++ +    ++ q   Lf        + y L  ++   +  ++r+ e+L+ vg+            g e+k       ls Gq+q + +aral  +P +L++De  s +D +  + +++ l+++ +   v ti  +h  +  ++  D++ v+++g++  +  Pe + ++P ++f a
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRveLSTLRSKITMIPQDPILFA-----GPLRYSLDPSG---AFSDARIWEALDCVGMRayfegtaqgggGLETKIvegGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITI--AHRID-TIVWYDKVLVLDAGEVVEYDDPEVLANRPGSAFAA 256
                 7999***********************************************8324666778999****99995.....6899*****99...778899********99622222222221234555222468**********************************************998877665..67654.78999****************************87 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.2   4.8e-17   3.3e-15       2     237 ..      14     256 ..      13     259 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 4.8e-17
   TIGR03258   2 aaqatsG.vvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth..lppykrnlallvqnyalfph...lkveenvafGlrarkqskaliaervadalklvqlsda..............aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfva 237
                 aa  t G v+l +++ +y      vl+ + + i     + + G++GsGk+t+ +++  +++ + G++ + + d++   l   + +++++ q+  lf       +    af            + r+ +al  v++  +                +  ++ls Gq+q + +aral   p+vl++de  s +d +  + ++  l+ + +     tv+ ++h r +++v  dk+l++  G+++++ +++ l + p   f+a
  MMETSP1174-20130828|7161_1  14 AAWPTDGvVRLSKVSARYRPSlpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRveLSTLRSKITMIPQDPILFAGplrYSLDPSGAFS-----------DARIWEALDCVGMRAYfegtaqggggletkIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFK---ACTVITIAH-RIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPGSAFAA 256
                 555666625799******976337**************************************************8722567788999999999999531012233334443...........3444444444444333111111110000004556789*********************************998888776666655...679999998.7899********************************98 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.6e-10   2.4e-08      14      77 ..      37     100 ..      22     145 .. 0.87
   2 !   22.0   0.0   3.5e-07   2.4e-05     123     187 ..     160     223 ..     149     244 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.6e-10
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGslie 77 
                  v++ v++ ++k+s  g+ G  G+Gkst+ kll  l++ + G i +dg +++r +l+ + s i 
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKIT 100
                 5899****************************************************98877665 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 3.5e-07
   TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsev 187
                 +++s G +q l +a all+ P++l++de t  +d    + ++ +++ + +   tvi  +h +  +
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA-CTVITIAHRIDTI 223
                 67899******************************9999999999988765.5555555655444 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.7e-06   0.00012       3      78 ..      40     113 ..      38     119 .. 0.85
   2 !   32.5   0.1   1.7e-10   1.2e-08     125     222 ..     161     255 ..     152     262 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.7e-06
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPl 78 
                 ++v++ + +   +++ G  GsGks+ a+ +  l++      +G i +dg +++ +  +    +i++i q+P+    Pl
  MMETSP1174-20130828|7161_1  40 KGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLME----VEDGTIEMDGYDISRVelSTLRSKITMIPQDPILFAGPL 113
                 6788888889999**************99999998....568**********998555566789*******9877777 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.7e-10
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhett 222
                 +ls G  q + +a all  + +l+ De t+++D  + + +  +l+++ +  + +++ i+h +  +    d+v+v+++G++ve  +++ l ++P ++ +
  MMETSP1174-20130828|7161_1 161 NLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFK--ACTVITIAHRIDTIVW-YDKVLVLDAGEVVEYDDPEVLANRPGSAFA 255
                 69999999999**********************************9986..6789*******99975.69***********************98876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.4e-07   6.4e-05      12      83 ..      37     104 ..      24     110 .. 0.81
   2 !   31.0   0.0   5.1e-10   3.5e-08     133     198 ..     160     224 ..     149     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.4e-07
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFq 83 
                  +lk +++ i k + v ++G+ GsGKst+  +l +l ++++g++ ++g + +    + + + lr+k++ + q
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDIS----RVELSTLRSKITMIPQ 104
                 5899999999**************************************9943....3344455666666655 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.1e-10
   TIGR03608 133 yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                  +ls G++q + +ar+ll  +++++ DE t+++D ++ +++ ++l+++ ++ + +i + H      
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACT-VITIAHRIDTIV 224
                 579**************************************999999998765.556667554444 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   3.1e-15   2.1e-13      17     214 ..      38     241 ..      21     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 3.1e-15
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreyle....fs.aalyklkgrk.lkkrveeliel.vGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadk 214
                 +l+ v   + k + vG  G  G+Gkst+ k+l   ++ + G+++++g+d+ +  l   r +i  +P+   l+    +r  l+    fs a +++  + + ++   e   +   Gl+++     ++ls G rq   +a+all  P+vl++de t+ +d      i+ +++++ k+ tvi  +h +  +    d+v++++ G++v  +
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELStLRSKITMIPQDPILFA-GPLRYSLDpsgaFSdARIWEALDCVgMRAYFEGTAQGgGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTI-VWYDKVLVLDAGEVVEYD 241
                 67888888999999************************************99776516889*****8766664.445555551111432556665554413444444443313577777777789******************************************************99998776.568**********99765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.6e-08   1.8e-06     309     381 ..       8      82 ..       2     101 .. 0.87
   2 !   23.7   0.0   5.1e-08   3.5e-06     160     239 ..     160     240 ..     153     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.6e-08
   TIGR03719 309 eivippgerlGdkvievenlskafgdk..lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                 ++++pp+    d v++++++s ++     l+++ +++ +pk + vGv G  G+Gkst+ kl+    + ++G++++
  MMETSP1174-20130828|7161_1   8 DVIVPPAAWPTDGVVRLSKVSARYRPSlpLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEM 82 
                 78999999999*************87633689*****************************************98 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 5.1e-08
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke.yk.Gtvvavthdryfldnva..eWileldrGegipy 239
                 e+ls G+++ + ++r lle+P +l++de t  +d  + + ++ +l++ +k  tv+ ++h    +d ++  + +l ld Ge + y
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDvFKaCTVITIAHR---IDTIVwyDKVLVLDAGEVVEY 240
                 689******************************************984442567777774...454441145788888888777 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-05    0.0011      18      84 ..      37     104 ..      19     113 .. 0.79
   2 !   32.7   0.0   1.2e-10   7.9e-09     126     222 ..     152     246 ..     145     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-05
   TIGR01288  18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararla..rakigvvpq 84 
                 +v++ +   i +    g+ g  g+gkst+a+l++ l+  + g+i + g ++ +r+ l+  r+ki ++pq
  MMETSP1174-20130828|7161_1  37 LVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDI-SRVELStlRSKITMIPQ 104
                 4667777788888899****************************9877654.56555333999999998 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 1.2e-10
   TIGR01288 126 eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                 e+k      +ls g ++ l +aral++ p++l++de t+ +d h+ ++i   lr ++    t++  +h ++      d++ vl+ag  +    p+ l
  MMETSP1174-20130828|7161_1 152 ETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA-CTVITIAHRIDTI-VWYDKVLVLDAGEVVEYDDPEVL 246
                 5565556678********************************************99865.5666667777654.57899999999988877777776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   2.5e-14   1.7e-12      15     183 ..      38     217 ..      29     226 .. 0.70

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.5e-14
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde.........laeellylgHldglKaeLsalEnLkfyaallqseqktveealekv..gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivlla 183
                 +l+g+++ +     + v G+ G+GK+t+ ++l  L++ e+G++e+++ ++++++ +         +++ +l++g l    +   a  + + ++al     ++  e +++   gL+       ++LsAGq++ l +ar ll++ ++ ++DE t ++D ++ ++++++l++  +   ++ +a
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELStlrskitmiPQDPILFAGPLRYSLDPSGAFSDARIWEALDCVGMRAYFEGTAQGggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIA 217
                 6788888888889999*******************************99988764410000111133334444433322222234445555555555455455554444311233333334479******************************************99987766555555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00011    0.0078     278     342 ..      20      81 ..      17      90 .. 0.79
   2 !   32.1   0.0   1.4e-10   9.5e-09     159     259 ..     152     249 ..     149     268 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
   TIGR03269 278 diikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGeve 342
                  ++++ +vs ry      v+k vd v   + ++   G+ G +G+Gk+t++k+l  ++e  +G +e
  MMETSP1174-20130828|7161_1  20 GVVRLSKVSARYRPSLPLVLKGVDVV---IPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIE 81 
                 57788888888877777777777765...666777899999999999999999999999888776 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1.4e-10
   TIGR03269 159 ehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvak 259
                 e +i+    +ls G++q + +ar l   p +l+ de t  +d +t k++  +l++  k+   +++  +h  + i    dk ++l+ Ge+ve  +pe + ++
  MMETSP1174-20130828|7161_1 152 ETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIV-WYDKVLVLDAGEVVEYDDPEVLANR 249
                 6667777789*********************************************9986..56677788877775.579*************999877654 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.2e-05    0.0029       1      51 [.      39      89 ..      39      94 .. 0.95
   2 !   30.6   0.1   7.5e-10   5.1e-08     113     192 ..     160     236 ..     150     252 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.2e-05
   TIGR01184  1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeite 51
                lk+vd+ i k   + + g +g gkst+  l+  l +  +g++ ++g +i++
  MMETSP1174-20130828|7161_1 39 LKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISR 89
                68999*****************************************99975 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 7.5e-10
   TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192
                 e+ls g +q + +aral   p++l++de    +d  t + +q  l ++++   +tv+ ++h +d  +   d+v++l +g 
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFK--ACTVITIAHRIDTIV-WYDKVLVLDAGE 236
                 689******************************************99996..69*********9765.568888888775 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.4e-14   1.6e-12     959    1156 ..      52     255 ..      17     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.4e-14
   TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaq.lemeamledt.....glhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtgly 1156
                    + g  g+gk+t   +l  l+    gt+ + g di   +l ++r  + m pq  ilf            a    r we  + + m a +e t     gl  k  e  ++ls g ++ l +a a++   +v+v+de ts +d ++ + i  +l       t+i  +h +d   +  d++ ++  g +     p +l n  g+ + 
  MMETSP1174-20130828|7161_1   52 VGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISrVELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARIWEALDcVGMRAYFEGTaqgggGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTI-VWYDKVLVLDAGEVVEYDDPEVLANRPGSAFA 255 
                  557899******************************6379******************976555555567788899999865378*****987666668****************99***************************************************9975.77899999999999999999999888887764 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.1e-05    0.0014      18      83 ..      43     110 ..      22     116 .. 0.83
   2 !   26.8   0.0   1.1e-08   7.6e-07     126     208 ..     159     238 ..     140     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.1e-05
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfa 83 
                 d+ + +  +v + G +G+Gkst+ +l+  ++e  +G+i +++ d   ++++  +  ++m+ q+  lfa
  MMETSP1174-20130828|7161_1  43 DVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDIsrVELSTLRSKITMIPQDPILFA 110
                 556677889********************************877611556778889999999998886 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.1e-08
   TIGR01277 126 peelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  e+ls Gqrq + +ar l++   +l++de  s +d +  + + ++++ +   k  t++ ++h+++  +   ++v+v++ G++ 
  MMETSP1174-20130828|7161_1 159 GENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVF--KACTVITIAHRID-TIVWYDKVLVLDAGEVV 238
                 689********************************987776666666654..5679******985.667899******99986 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-07   1.5e-05      15      72 ..      38      93 ..      34     111 .. 0.89
   2 !   19.2   0.0     2e-06   0.00014     146     232 ..     163     246 ..     151     256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.3e-07
   TIGR01978 15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleve 72
                +Lkg+++ + k   + + G+ GsGkst++k l     +ev++G+i+++g d++ +e  
  MMETSP1174-20130828|7161_1 38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFR--LMEVEDGTIEMDGYDISRVELS 93
                89******************************85..6899************998865 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2e-06
   TIGR01978 146 sGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvela 232
                 s G ++   + + +l  P++ ++De+ s +D  + k++ +++ ++    ka+ +it  +r+   +  d+v vl +G++v+  d e++
  MMETSP1174-20130828|7161_1 163 SAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDV---FKACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVL 246
                 55555555555556668********************99887555...67899999999*********************9998875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0023      0.16       9      43 ..      52      86 ..      45     107 .. 0.81
   2 !   32.0   0.0   3.1e-10   2.1e-08     113     201 ..     161     248 ..     152     253 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0023
   TIGR03771  9 lgllGpnGaGkttllrailglikvakGsvkvagks 43
                +g+ G  G+Gk+t+ + ++ l++v+ G+++++g  
  MMETSP1174-20130828|7161_1 52 VGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYD 86
                8999***************************9964 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 3.1e-10
   TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                 +ls Gqrq + +aral  +p++l++de  + +d  + +++  +++++ ++  +++  +h +   v   + +vl  g+vv    p+ l +
  MMETSP1174-20130828|7161_1 161 NLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKAC-TVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLAN 248
                 69*******************************************998765.6777889998888877777888899999999987765 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.7e-06   0.00066      17      86 ..      39     105 ..      36     111 .. 0.82
   2 !   23.8   0.1   4.2e-08   2.9e-06     403     481 ..     161     237 ..     154     248 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.7e-06
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqe 86 
                 l+++d+ +     v++cG  G+Gkst+ k+l  +      dG i ++g ++   +++ t r  i++i q+
  MMETSP1174-20130828|7161_1  39 LKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEV--EDGTIEMDGYDISRVELS-TLRSKITMIPQD 105
                 7899999999999******************998765..589999999999877775.566667777776 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 4.2e-08
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGkl 481
                 +ls G++q   +a+ ll  prvl++de t  +d  +   i  ++ + + +  ++i ++  +  ++   d+vlv++ G++
  MMETSP1174-20130828|7161_1 161 NLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTML-RDVFKACTVITIAHRIDTIV-WYDKVLVLDAGEV 237
                 46777777777777777777777777777777755544444444.44455666777776665544.4577777777765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.5   2.9e-12     2e-10      20     222 ..      41     239 ..      36     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.9e-12
   TIGR03411  20 dlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlela.lkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvla 222
                  +++ + +++   + G  G+Gk+t+  ++   ++ ++G++ ++g d+++++  +  r+ i+   q p +f     +  l+ + + +d +++++l     ++  e  +      gLe+k  +   +Ls Gq+q L ++  l++ p++l++De ++ +  +  + +  +l+++ k ++v+ + h ++ +  + +kv vl  G+v+ 
  MMETSP1174-20130828|7161_1  41 GVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVEL-STLRSKITMIPQDPILFAG-PLRYSLDPSgAFSDARIWEALDCVGMRAYFEGTA--QGGGGLETKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKACTVITIAHRIDTIVWY-DKVLVLDAGEVVE 239
                 566677777777799********************************99865.566899********99986.5566676552557889999996555444443333..3456899*********************************************************************99876.5899*****9975 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.042       2.9      54      98 ..      52      93 ..      21     111 .. 0.70
   2 !   32.5   0.0   1.1e-10   7.7e-09     156     246 ..     153     238 ..     150     248 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.042
   TIGR00955 54 lAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemr 98
                + v G  G+GK+T ++ l fr ++  +  g++ ++G  + + e++
  MMETSP1174-20130828|7161_1 52 VGVCGRTGSGKST-MAKLLFRLMEVED--GTIEMDGYDISRVELS 93
                7799*********.5667777765444..4799999876655443 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.1e-10
   TIGR00955 156 trigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvv 246
                 t+i   g    lS+G+r+ l +a  ll+ P +L++DE Ts +D  + +++  +L+++  k  tvi+  H    +    +dk+++l+ G vv
  MMETSP1174-20130828|7161_1 153 TKIVEGG--ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDV-FKACTVITIAHRI--DTIVWYDKVLVLDAGEVV 238
                 6666555..48*********************************9877766666666.5667799999985..556679**********98 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   4.8e-12   3.3e-10     468     653 ..      38     233 ..      18     238 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 4.8e-12
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlle....reggwd.avqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshrksLwkyHeylLkld 653
                 +++ + + +++ +++ ++G  G GKs + ++l  l  v              +     ++k+  +Pq P +  g lR  +  P          +sd+ + + L+ v +    e     +gg++  + +  + Ls G++q + mAR +   P+  v+DE+ts +    ++ +  ++++v    t+++++hr   + +++ +L ld
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDgtiemdgydisRVELSTLRSKITMIPQDPILFAGPLRYSL-DPS-------GAFSDARIWEALDCVGMRAYFEgtaqGGGGLEtKIVEGGENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVfkACTVITIAHRIDTIVWYDKVLVLD 233
                 55666778899999************************99788888887753444456899****************543.232.......35899999999*999998877622114455662588999***********************************999999999999644789*******98888888888887 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   4.1e-11   2.8e-09     351     549 ..      33     239 ..      18     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 4.1e-11
   TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat..tylsrleledkvk...vedlnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                  s ++ l  +d+ i +   v + G  G Gkst++kll  l   ++G + +dG  +s       r   + +  d  lf   +    +   +  +a+  + l+ +++    +     +++  t       +ls Gqr+ l +  a le   vl++de +++ d    ++  + +l d+ +   t++ i+h        d+++ l +G vv+
  MMETSP1174-20130828|7161_1  33 PSLPLVLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDISRVELSTLRSKITMIPQDPILFAGPLRYSLDPSGAFSDARiwEALDCVGMRAYFEgtaQGGGGLETKiveggENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQT-MLRDVFK-ACTVITIAHRIDTIVWYDKVLVLDAGEVVE 239
                 577899999********************************************************************9988866666666666651155888888765431113344555432222258*********************************99998866.6777754.67999****9999999***********996 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.3e-11   1.6e-09      21     230 ..      42     251 ..      20     258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.3e-11
   TIGR02323  21 vsflypGe.vlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevs...aGanigerllavgarhyGkiraaak.wlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlavarllaqrllvmkqGrvvesGltrvlpkhpy 230
                 v+ + p +  +g+ G +GsGkst+ k l   +  ++G+++ +  +     ++ls  + ++ +  +  ++   p    ++ s   + a i e l  vg+r y +  a+    le   ++      +++s G +q l +ar+l+  pr+++m e t  +     +++  +lr + +    +vi ++h   + +  +++lv+  G+vve    +vl ++p 
  MMETSP1174-20130828|7161_1  42 VDVVIPKHsKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGYDI--SRVELSTLRSKITMIPQDPILFAGPLRYSLDPSgafSDARIWEALDCVGMRAYFEGTAQGGgGLETKIVEG----GENLSAGQRQLLCMARALLEAPRVLVMdEATSNIDGHTDKMIqtMLRDVFK--ACTVITIAHRIDTIVWYDKVLVLDAGEVVEYDDPEVLANRPG 251
                 555555431579****************9999999***99887773..3344454455555555555555555544444332224678999999******9887776663555544444....789************************899999977777777667788777..678899999555567778************999999977774 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.4e-06   0.00051      23      68 ..      38      83 ..      29     104 .. 0.85
   2 !   17.3   0.0   7.7e-06   0.00053     150     208 ..     162     219 ..     158     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7.4e-06
   TIGR02324 23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68
                vlk v++ + +   v + G++G+Gkst+ k l++   +e g+i + 
  MMETSP1174-20130828|7161_1 38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEVEDGTIEMD 83
                67889999999999***************************99875 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.7e-06
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                  s G +q + +aral+    +L++de t+ +d  + k++  +++++  + +++i+i h 
  MMETSP1174-20130828|7161_1 162 LSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDV-FKACTVITIAHR 219
                 699**************6667889************9888888776.5679999**995 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.014      0.99      55      94 ..      54      86 ..      36     109 .. 0.71
   2 !   22.2   0.0   1.8e-07   1.2e-05     163     260 ..     160     254 ..     150     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.014
   TIGR03415 55 lmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvak 94
                + G +GsGks++ + + +l  v  G +++           
  MMETSP1174-20130828|7161_1 54 VCGRTGSGKSTMAKLLFRLMEVEDGTIEMDGY-------D 86
                57999**************9998888876533.......2 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.8e-07
   TIGR03415 163 gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaney 260
                 ++ls G +q + +ara+     +l+mde  s +d    + +q  l ++ k    t++ ++h +d  +   +++ +++ G +v ++ pe +  +P +++
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLEAPRVLVMDEATSNIDGHTDKMIQTMLRDVFKA--CTVITIAHRIDTIV-WYDKVLVLDAGEVVEYDDPEVLANRPGSAF 254
                 68***************99999*************9999999988877765..59********9876.568999**************9999998776 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.26        18      76     108 ..      38      70 ..      22      95 .. 0.74
   2 !   16.2   0.0   4.6e-06   0.00032     897     980 ..     157     236 ..     151     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.26
   TIGR00956  76 ilkdvdglikpgelvvvLGrPgsGcstlLksia 108
                 +lk vd +i     v v Gr gsG+st+ k + 
  MMETSP1174-20130828|7161_1  38 VLKGVDVVIPKHSKVGVCGRTGSGKSTMAKLLF 70 
                 789999999888888999*********988653 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.6e-06
   TIGR00956 897 vpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGG 980
                 + Ge L+  qR+ l ++  L   P+ +l +De ts +D +t   i  +lr + +a   ++   H   ++ +  +D++L+l  G 
  MMETSP1174-20130828|7161_1 157 EGGENLSAGQRQLLCMARALLEAPR-VLVMDEATSNIDGHTDKMIQTMLRDVFKACT-VITIAHR--IDTIVWYDKVLVLDAGE 236
                 56899999****************5.5669************999999999998764.4444565..44444688888888774 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00025     0.017      12      39 ..      39      66 ..      36     107 .. 0.86
   2 !    6.0   0.1    0.0086      0.59     827     903 ..     160     232 ..     150     241 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00025
   TIGR00630 12 LknidvelprdklvvitGlsGsGkssLa 39
                Lk +dv +p+++ v + G  GsGks++a
  MMETSP1174-20130828|7161_1 39 LKGVDVVIPKHSKVGVCGRTGSGKSTMA 66
                7888999999999999999999999887 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0086
   TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903
                   Ls G  q + +a+ L +      + ++De t  +  +   k+++ + r v k  tv+ i h +d i   D ++ l
  MMETSP1174-20130828|7161_1 160 ENLSAGQRQLLCMARALLE---APRVLVMDEATSNIDGH-TDKMIQTMLRDVFKACTVITIAHRIDTIVWYDKVLVL 232
                 5789999999999999876...456889*****999765.4678888888888899************999987644 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00019     0.013     153     173 ..      53      73 ..      42      82 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   TIGR02525 153 licGetGsGkstllaaiyryi 173
                  +cG tGsGkst++  ++r +
  MMETSP1174-20130828|7161_1  53 GVCGRTGSGKSTMAKLLFRLM 73 
                 59************9999976 PP

>> TIGR02524  dot_icm_DotB: Dot/Icm secretion system ATPase DotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00034     0.023     125     171 ..      40      85 ..      24     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00034
   TIGR02524 125 aiveaiapqegvvyvtgatgsgkstllaaiirelieasdsnrkvlty 171
                 + v+ + p+   v v g tgsgkst+ a ++  l+e  d    +  y
  MMETSP1174-20130828|7161_1  40 KGVDVVIPKHSKVGVCGRTGSGKSTM-AKLLFRLMEVEDGTIEMDGY 85 
                 45899********************7.66777799999887666555 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00069     0.047       3      34 ..      44      75 ..      42      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00069
   TIGR04075  3 leipelslvvlvGasgsGkstfarkhfkptev 34
                + ip+ s v + G +gsGkst+a+  f+ +ev
  MMETSP1174-20130828|7161_1 44 VVIPKHSKVGVCGRTGSGKSTMAKLLFRLMEV 75
                679************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        86  (0.0209654); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 0.98u 0.23s 00:00:01.21 Elapsed: 00:00:00.67
# Mc/sec: 529.93
//
Query:       MMETSP1174-20130828|7164_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1174-20130828|7165_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1103.91
//
Query:       MMETSP1174-20130828|7163_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-08   30.0   0.0    1.9e-07   28.3   0.0    1.8  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    0.00038   18.0   0.0       0.24    8.7   0.0    2.3  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0064   13.2   0.2      0.084    9.6   0.0    2.3  3  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.2   2.8e+02       1      31 [.      43      73 ..      43     116 .. 0.75
   2 !   28.3   0.0   1.4e-10   1.9e-07     122     230 ..     185     295 ..     178     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.2
   TIGR01214  1 rilitGakgqlgreLveqlskegsevvaltr 31
                +++++G +g lgr  ++++ k g++    +r
  MMETSP1174-20130828|7163_1 43 KVAMFGVTGFLGRYVANEVGKVGCTAYLANR 73
                6889999999999999999987776655554 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 1.4e-10
   TIGR01214 122 nvYgqsKlaGEvavraasekalivRtswlygasggrnFvktmlrlakereelkvvadQ..igsPTyakdlaevlaaller..eargvyHlanegqvSwyefaqaifevleeeg 230
                 + +++sK  GE av++ +++a ivR + l+g++     ++ +  +a++   + +v+d   +  P y+ d+a++++a++++   a +++ la+     + e  + + ++  + +
  MMETSP1174-20130828|7163_1 185 SEWARSKARGEAAVLKEFPEATIVRPATLFGYED--RLLNLLAFMAQRLPAVPMVEDGsaLFQPVYVGDVAKAIMAAVNDedMAGRTLELAGPADFTRKEIMEFVYDTTRQLT 295
                 5689****************************96..667777777788899******622679*************9998777888999999888888887777777666655 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00049      0.66       1      68 [.      44     121 ..      44     196 .. 0.80
   2 !    8.7   0.0   0.00018      0.24     189     256 ..     238     307 ..     186     321 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00049
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..........aeeealegvdavinLaGep 68 
                 v+++G tG++Gr +++e+ k g + ++  r  + e+++ +   +  ++           + +e +++ d+vin+ G+ 
  MMETSP1174-20130828|7163_1  44 VAMFGVTGFLGRYVANEVGKVGCTAYLANRGCTMETRHLQPLFDLGNAAyyvysprdedSIREIIQESDVVINMIGKY 121
                 6799********************999999999888887666554444456776654433344889999999999975 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00018
   TIGR01777 189 GsGrqwlsWihleDlvklilfaleneevsG.vvNataPepvrnkefakalakalhrpa.llpvPklvlkl 256
                  +G+ ++  + + D++k+i  a+++e+++G  + ++ P   + ke+++ + ++  + + ++pvPk ++ +
  MMETSP1174-20130828|7163_1 238 EDGSALFQPVYVGDVAKAIMAAVNDEDMAGrTLELAGPADFTRKEIMEFVYDTTRQLTpIVPVPKEIMAI 307
                 57888899999*******************55799************99998887765256799976543 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.021        29       3      28 ..      44      69 ..      42     121 .. 0.83
   2 ?   -2.8   0.0      0.35   4.8e+02      88     116 ..     151     179 ..     147     190 .. 0.80
   3 !    9.6   0.0   6.1e-05     0.084     162     288 ..     205     328 ..     184     370 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.021
   TIGR03466  3 vlvtGatGFvGsavvrllleeGeevr 28
                v + G+tGF+G  v+ ++ + G++  
  MMETSP1174-20130828|7163_1 44 VAMFGVTGFLGRYVANEVGKVGCTAY 69
                55679***********9999998754 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.35
   TIGR03466  88 anvegtravleaAleagvervvytssvat 116
                 + v+ + ++ + A+e+g  r +  s+ a+
  MMETSP1174-20130828|7163_1 151 THVDIAARLAKIAKEEGASRFIQVSALAA 179
                 56677788889999999999999998886 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 6.1e-05
   TIGR03466 162 vvivnPstPiGprDikptPtgriivdalkrkmPa..yvdtgLnl...vdvddvaegHllAlerGriGerY..iLGgenltlkqlleklaeitglkapklklpkalllpvallaealakltgkePlvtvdgvrma 288
                 + iv P+t  G +D+        ++ ++++++Pa   v+ g  l   v v dva++ ++A+++  +  r   + G  ++t k+++e + + t + +p + +pk+++  +a++ +++      eP  t d v++ 
  MMETSP1174-20130828|7163_1 205 ATIVRPATLFGYEDRLLN-----LLAFMAQRLPAvpMVEDGSALfqpVYVGDVAKAIMAAVNDEDMAGRTleLAGPADFTRKEIMEFVYDTTRQLTPIVPVPKEIMAIMAMVGDQMP-----EPYLTPDDVNLQ 328
                 556666666666665543.....56677777777444776655533488************997776665225799***********************************999875.....455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1213.66
//
Query:       MMETSP1174-20130828|7167_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 668.74
//
Query:       MMETSP1174-20130828|7168_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1835.85
//
Query:       MMETSP1174-20130828|7175_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|7171_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-24   84.3   2.6    3.3e-24   83.4   1.8    1.4  1  TIGR00984 3a0801s03tim44: mitochondrial import inner membrane, translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00984  3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   1.8   8.1e-28   3.3e-24     183     375 ..     287     476 ..     264     477 .. 0.90

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 8.1e-28
   TIGR00984 183 keenvvvrkllelkkkydEsenvlvrviRkltdkvggvlsglfsetEvsevlteikkiDptFdkeeflryleekivPeilEAyvkgdlevLkkWlsEaaysvlattvkeykklgvsaksrilDirgvela.sgklleqg..Pvlivtfraqevnviknak.GevvaGdedkikrisyvwvltRdeeeldeteaWkll 375
                 k + +v   + + +  ++ s+n+ v  i ++ d+v+        et+++ vl+e++++Dp F+ e + + + + ++PeilE + +gd++ +k Wl+    + l   ++e kk +  ++s il +   e++    +l+++  P+l + + +q++n i++ + Ge+ +G ed i   +y +v+ R+  e +    Wk+ 
  MMETSP1174-20130828|7171_1 287 KAKDRVNDGIEDAREAWETSQNPWVYRISEVWDSVTY-------ETDTAVVLRELQRLDPGFSLEVWKEEMTTILIPEILESWSRGDVKKIKYWLQKDMLQRLVYDINERKKEKQIMDSNILSLDFAEVLiDTSFLDNNsgPMLGIFVAVQQINCIRHLDtGEITEGAEDDIILNKYSFVFQREYAETEGVLVWKVA 476
                 56678899999999**********9998888888888.......9****************************************************************************87766665414567777779******************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1740.83
//
Query:       MMETSP1174-20130828|7174_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   45.1   0.1    3.2e-12   44.6   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      1e-06   26.1   0.1    1.5e-06   25.5   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      3e-06   24.5   0.0    4.4e-06   24.0   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      3e-06   24.6   0.0    4.1e-06   24.2   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00066   17.1   0.0      0.001   16.5   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0071   13.6   0.1      0.012   12.9   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0072   12.7   0.0     0.0097   12.2   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.019   12.4   0.0    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   6.2e-15   3.2e-12       6     111 ..      21     128 ..      18     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 6.2e-15
   TIGR02072   6 aktYdqha...kvQreiakkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.nvqficgdie.klplekksfDlivSnlalQWld 111
                 +k+Y++++   ++Q eia++ +ell    + + + +Ld+GcG+G+  ral++   +   i  D+s  ml +a+++++ + ++++ d+   lp++++ fD  +S +alQWl 
  MMETSP1174-20130828|7174_1  21 SKKYTSSSriiQIQTEIANRAIELLALP-EGQASFILDVGCGSGLSGRALEEAGHAW--IGCDVSSDMLDIANEHETdTGDVMQHDMGlGLPFRQAVFDGAISISALQWLC 128
                 5667766622258**********99986.567789*********9999999988776..******************9999*****96379******************84 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     3e-09   1.5e-06      49      93 ..      51      95 ..      21     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 3e-09
   TIGR01983 49 eglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakk 93
                +   +lDvGcG+Gl   +l + g + +g D+s++++++A++h++ 
  MMETSP1174-20130828|7174_1 51 QASFILDVGCGSGLSGRALEEAGHAWIGCDVSSDMLDIANEHETD 95
                46679*************************************876 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.6e-09   4.4e-06      32     109 ..      44     117 ..      18     123 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.6e-09
   TIGR01934  32 vkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfda 109
                 + ++ e +++ +lDv +G+G    +l+++     +g+D+s++mL++a++  +++ +    +++     Lpf++++fd 
  MMETSP1174-20130828|7174_1  44 LLALPEGQASFILDVGCGSGLSGRALEEAG-HAWIGCDVSSDMLDIANEHETDTGD---VMQHDMGLGLPFRQAVFDG 117
                 44445557889*********9998888866.6688***************877743...356667799********94 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.9e-09   4.1e-06      32     101 ..      29      98 ..      17     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 7.9e-09
   TIGR02021  32 tvreGreamrekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekede 101
                  +++ + ++ ++++e l     + + +lD GCG+Gl    l + G    + D+s +++++a+++  ++ +
  MMETSP1174-20130828|7174_1  29 RIIQIQTEIANRAIELLALPEGQASFILDVGCGSGLSGRALEEAGHAWIGCDVSSDMLDIANEHETDTGD 98 
                 56666667777777766633335677************************************99887763 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06     0.001      14     116 ..      20     116 ..      14     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-06
   TIGR02752  14 iykkydrmnsvisfkrhkkwrkdtmkrmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfd 116
                  +kky +   +i ++   + r   +  +   + + +ldv cg++    al ea g+    +g d s +ml++++e+  d+   +v + h   + lp+ +  fd
  MMETSP1174-20130828|7174_1  20 ESKKYTSSSRIIQIQTEIANRAIELLALPEGQASFILDVGCGSGLSGRALEEA-GH--AWIGCDVSSDMLDIANEHETDTG--DV-MQHDMGLGLPFRQAVFD 116
                 578999999999999999888765555555555668*******9877777554.33..358************99876654..44.68999999***999999 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.4e-05     0.012      82     130 ..      43      91 ..      32     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-05
   TIGR03534  82 eel..kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvark 130
                 e l  ++ ++  +lD+g+GsG  + al +       i++D+s++ l++a++
  MMETSP1174-20130828|7174_1  43 ELLalPEGQASFILDVGCGSGLSGRALEEA--GHAWIGCDVSSDMLDIANE 91 
                 444456777799**************9887..5666899999999999976 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.9e-05    0.0097     263     324 ..      30      91 ..       7     104 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
   TIGR04074 263 kvslaeqRleavva..alresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakr 324
                  ++++++ ++  ++  al e +a  +lD+GcG+g   +aL  e++ ++ +g+dvs   L++a++
  MMETSP1174-20130828|7174_1  30 IIQIQTEIANRAIEllALPEGQASFILDVGCGSGLSGRAL--EEAGHAWIGCDVSSDMLDIANE 91 
                 444444444444431156789999**********665555..56667889**********9987 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05     0.019      14      87 ..      52     126 ..      41     139 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.6e-05
   TIGR02081  14 gsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGv...eviqqdldegLeafedksfDvvvlsqtlqa 87 
                  s +LD+GcG+G   ++l +e      G +++++++  + ++     +v+q+d+  gL+ f++  fD ++   +lq 
  MMETSP1174-20130828|7174_1  52 ASFILDVGCGSGLSGRAL-EEAGHAWIGCDVSSDMLDIANEHETdtgDVMQHDMGLGLP-FRQAVFDGAISISALQW 126
                 5889********999999.556666788888888776555443311289******9997.88999**9999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1019.25
//
Query:       MMETSP1174-20130828|7180_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1490.20
//
Query:       MMETSP1174-20130828|7181_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1174-20130828|7186_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1493.13
//
Query:       MMETSP1174-20130828|7190_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|7189_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 743.05
//
Query:       MMETSP1174-20130828|7185_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|7193_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   11.8   3.0      0.013   11.6   2.1    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   3.2e-06     0.013     174     260 ..      26     112 ..       2     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-06
   TIGR00934 174 vslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedly 260
                     ++s+++  f++ + +G+++++ e++sv s+ +++ ++sd+    s+ss r+++s +     r ++ k+ k+r +r ++ ++l+
  MMETSP1174-20130828|7193_1  26 ANGLNQSRDTWAFSKAMPNGQMQRPVEESSVVSKVDPQASRSDVFDRLSVSSARSKTSARSDVFDRLSTTKTRKSRAPRSVQTKKLN 112
                 445667888889************************************************9999*****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 612.43
//
Query:       MMETSP1174-20130828|7197_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 515.58
//
Query:       MMETSP1174-20130828|7198_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1174-20130828|7200_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 771.31
//
Query:       MMETSP1174-20130828|7201_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|7196_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   43.2   5.0      1e-06   24.7   0.0    2.6  3  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
       0.77    5.2  33.0        1.6    4.1  22.9    1.4  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.4       0.5     1e+03     858     917 ..     276     333 ..     253     355 .. 0.55
   2 !   20.4   0.0   9.8e-09     2e-05       4      92 ..     386     478 ..     384     482 .. 0.87
   3 !   24.7   0.0   5.1e-10     1e-06      97     186 ..     521     608 ..     518     629 .. 0.83

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 0.5
   TIGR03903 858 vaaallarvprvaaarpalladhfaradafadavdagleaarralerslndeairyarav 917
                 +a+a  + ++++ a+  + l      a++  + v+  l+a+r+ ++r lnde  r  ++v
  MMETSP1174-20130828|7196_1 276 AAEAAQQ-RKEGGAEAMDHLILRELEAQQNEETVKVRLAAIRKEQTR-LNDERNRLDTEV 333
                 3333333.333444444444445556666666666666666666555.455555555554 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.8e-09
   TIGR03903   4 hkvaikllRedaa....eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDal 92 
                 ++va+k+     +    +++   +   Re a+   L+h ++v+L D  e + +   +v e+  G  l  +L+ad  Lp ++   ++lq++ +l
  MMETSP1174-20130828|7196_1 386 QEVAVKVHQLIDSwpdeKKNNYTKHATREYAIHRDLNHRHVVQLYDVFEINLNAFATVLELCHGGDLDRRLKADRQLPEGDARSVLLQIMAGL 478
                 678888876544455644455667889*************************9*9**********************************9876 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 5.1e-10
   TIGR03903  97 daGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLR.gepv..taksDlYaWGLivleCLtGk 186
                 ++ ++h DLkP ni+    d e  ak+ DFG++ ++ + ++     + +t+   G+  Y  Pe    g ++   +k D+++ G+i+   L G 
  MMETSP1174-20130828|7196_1 521 RRAIIHYDLKPGNILF---DSEGDAKITDFGLSKIVEDLNER--PDIELTSQGAGTYWYLPPECFHvGQAPriSSKVDVWSVGVIFYQMLYGC 608
                 578***********98...556679****************5..5555556668*********9864666522577899999****9999885 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  22.9   0.00079       1.6     236     434 ..     141     344 ..     127     354 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00079
   TIGR02168 236 elkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaei..srleqeieilkerleqlekele...eleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeae 434
                  l+ee+++l++el++++++++++ea++++l++ele++++e+ + +++ + + ++l + +++   +r+  +++  + rl +++ +++   + +e   e+ + + e +++ ael ++   lk+  +   +e +ea++++e++++r+e   e+++ l  +  e+++++++ + +l  +++e ++l+++r+rl++e+ e++++l+ ++
  MMETSP1174-20130828|7196_1 141 GLQEEVARLSNELRDEQSRRQDAEAQVATLQTELERVMEERDSYRKKSALVIETLVQSASRRedDRIRLRLATDSFRLGSVSYKRNpgsQGSEYGWEDGQALREIKKSQAELLAREVALKQLTKLKTKETKEAKKAAEAAQQRKEGGAEAMDHLILRELEAQQNEETVKVRLAAIRKEQTRLNDERNRLDTEVVEHRRELKRMQ 344
                 578999999999999999999999999999999999999998888887776666655554440155666666677777766655541114455555666666666666666666666666666667777777777888888888888899999999999999999999999999999999999999999999999988888443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       360  (0.0877621); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 1605.08
//
Query:       MMETSP1174-20130828|7202_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1102.75
//
Query:       MMETSP1174-20130828|7205_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 918.94
//
Query:       MMETSP1174-20130828|7210_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|7207_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1174-20130828|7209_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 327.97
//
Query:       MMETSP1174-20130828|7212_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   12.9   0.2      0.007   12.8   0.1    1.0  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
     0.0073   12.4   0.1     0.0077   12.4   0.1    1.0  1  TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA


Domain annotation for each model (and alignments):
>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   3.4e-06     0.007     263     302 ..      29      78 ..      21      79 .] 0.94

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.4e-06
   TIGR01447 263 lDvlvvDEaSMvdlelmakLlealkketk..........LIllGDknQLa 302
                 +D lvvDEa  v ++ ++ + + ++  +           +Il+GD+ QL+
  MMETSP1174-20130828|7212_1  29 CDFLVVDEAGQVPVTRLIAMGQVIRTGQNddlddndnggIILVGDQMQLP 78 
                 799**********************99999*******************8 PP

>> TIGR02768  TraA_Ti: Ti-type conjugative transfer relaxase TraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   3.8e-06    0.0077     447     486 ..      29      77 ..      13      79 .] 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.8e-06
   TIGR02768 447 kdvlviDEAGmvasr...qlarvlkeAeea......gakvvLvGDpeqL 486
                  d lv+DEAG v       +++v+ + ++       +  ++LvGD++qL
  MMETSP1174-20130828|7212_1  29 CDFLVVDEAGQVPVTrliAMGQVIRTGQNDdlddndNGGIILVGDQMQL 77 
                 599********98762335899**998765111111567*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 274.40
//
Query:       MMETSP1174-20130828|7213_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   34.1   0.7    1.9e-09   33.8   0.5    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0046   14.4   0.1     0.0081   13.6   0.0    1.5  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.028   12.0   0.1      0.095   10.3   0.0    1.7  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.5   1.4e-12   1.9e-09     602     731 ..      22     151 ..       5     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.4e-12
   TIGR02917 602 ellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLllee.krleeAlkllkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalk 731
                 e+ ++  ++ +   + +++++ ++  ++ qp+    ++ l  +    ++ ++A + l++aL+l+pdn  a       + e+ +++ +A  + ++l + +p++  g   +G+la+r +d+++A ++y  +l+
  MMETSP1174-20130828|7213_1  22 EAGAMTSSSKMGPEQREEILSLYERSVAAQPKDSIGHADLGRFI-LEEEPDRANKHLRRALDLNPDNEVALYYHGLHAFENlNDTAAAQAVWQHLVAVNPSHVNGRRRLGQLAVRGEDWAEADMQYATLLE 151
                 666777777777889999************************99.8999********************9998877777655899*****************************************98876 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.9e-06    0.0081      87     193 ..      43     147 ..      20     162 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.9e-06
   TIGR02521  87 sfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                  ++++++ +p++   +   G+F  ++ + + A +++++A+  +  ++ a  y  +   + +++dt+ a++  + +++++p+  +  + l +l +   + aeA+ +++
  MMETSP1174-20130828|7213_1  43 LYERSVAAQPKDSIGHADLGRFILEE-EPDRANKHLRRALDLNPDNEVALYYHGL-HAFENLNDTAAAQAVWQHLVAVNPSHVNGRRRLGQLAVRGEDWAEADMQYA 147
                 57778888888888888888887764.5677788888887655433333333322.334456777778888888888888888888888888777777777777665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0087        12      72     120 ..      41      88 ..      30      95 .. 0.74
   2 ?   10.3   0.0     7e-05     0.095       4      79 ..      74     150 ..      72     162 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0087
   TIGR02552  72 iaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 +  Y++ +a++++d + +  ++   ++ +e+ +A+k L++a+++  ++e
  MMETSP1174-20130828|7213_1  41 LSLYERSVAAQPKDSIGHADLGRF-ILEEEPDRANKHLRRALDLNPDNE 88 
                 567777788888888777777774.445788889999999988888776 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 7e-05
   TIGR02552   4 gatlksllgldeeqleaiYalAYnlyqq.gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaa 79 
                 ++ l+ +l+l++++  a+Y ++ +++++  + + A+ + q L+a++p   +   +L+    + ++++eA  +Ya  +
  MMETSP1174-20130828|7213_1  74 NKHLRRALDLNPDNEVALYYHGLHAFENlNDTAAAQAVWQHLVAVNPSHVNGRRRLGQLAVRGEDWAEADMQYATLL 150
                 5678999999999999**********98357889999*********************************9998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1174-20130828|7216_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|7214_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 193.27
//
Query:       MMETSP1174-20130828|7217_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|7218_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 684.39
//
Query:       MMETSP1174-20130828|7219_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|7225_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 512.24
//
Query:       MMETSP1174-20130828|7227_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   16.0   0.9     0.0014   16.0   0.6    2.6  3  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   3.5e-07    0.0014     104     194 ..      37     138 ..       1     150 [. 0.84
   2 ?   -2.5   2.4      0.15     6e+02       5      31 ..     187     213 ..     183     253 .. 0.75
   3 ?   -0.3   0.1     0.033   1.3e+02     267     292 ..     235     260 ..     227     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.5e-07
   TIGR00817 104 fsvvlskfflgrefpltlylsLlpivlGva.........lasltelsfnllgf.lsamisniefvarnifsKkiltkk.sldklnlyalisililfllspia 194
                 +s+++sk+fl+ e+ ++ y+  + + +G+           as++e++ n +      +is i  +  +++   +l+ + ++d + l   +si  +++++p  
  MMETSP1174-20130828|7227_1  37 ISMIISKMFLKAEYSVPQYVGAMVVCGGIVtvllpeltgGASDDESGHNQVLWaAVNIISCIPMTISSVYKEAALQGQdDIDVVYLNGWVSIFQFLFCLPLL 138
                 68999***************99999***999********9*******997643145689***********99999988799999999999999999998865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.15
   TIGR00817   5 llfllwyvlnvyFnivnkkllklfhyp 31 
                 ++  +++++n+ Fn++   +lk+  ++
  MMETSP1174-20130828|7227_1 187 FYVTMYMIFNISFNVIIIVILKYGSAN 213
                 56789999******7777777765544 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.033
   TIGR00817 267 lffetkisflqvlGvilaiaGvflYs 292
                 +  +++i++ + +G+++ +aG+ +Y 
  MMETSP1174-20130828|7227_1 235 IPGHKPIKYTDIVGLVVIMAGIGMYR 260
                 5558899***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1493.36
//
Query:       MMETSP1174-20130828|7229_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1098.49
//
Query:       MMETSP1174-20130828|7231_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|7233_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   26.6   0.0    6.4e-07   26.1   0.0    1.1  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    2.2e-05   21.9   0.1    7.2e-05   20.2   0.1    1.8  1  TIGR01752 flav_long: flavodoxin
    0.00042   18.7   0.0     0.0013   17.1   0.0    1.7  1  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.7e-10   6.4e-07      48     181 ..      46     194 ..      32     207 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 4.7e-10
   TIGR01931  48 aaeaeekaakekevtilyasqtGnarrlakklaekleaaglkvk.....lvsakdyk.akelkkeklll..lvistqGeGepPeeaislhkfl....askkaPk..lenlkysvlgLGDssYe.ffCqagkdfDkrleeLGgkrllerv 181
                 ++++e++++   ++ ++++  tG a+r a+ + e ++++gl +       ++a+ +    +  ++  l+  +v+st  +G  P  a      l    +  +     l   +++v+gLG s Y+ ++C+a k + + l +LG+   l+  
  MMETSP1174-20130828|7233_1  46 TNSSEATKTPARNLHVVFGTTTGTAKRFANFVCEGAQQQGLVSMgpaldAADADPWVwLDDTTDVSSLFivVVMSTWTDGKGPISAQRWCAALedmaNDFRVGSlaLMGARFAVYGLGSSYYDdNWCGACKAIHANLTALGATPALPMD 194
                 3444555555569*************************9987642211134444443235666666665115679********9997655554110055555541156779*********996379***************98777665 PP

>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   5.3e-08   7.2e-05       4     113 ..      61     188 ..      58     194 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.3e-08
   TIGR01752   4 ifygsdtgntekiaeki...ekelg.esavdvvnikkas....aeeleaydvl..ilgtptwgaGelq...edWeeilskle......eldlkgktvalfGlGdqegysetfvdalgiladklkarGak 113
                 +++g++tg++++ a+ +   +++ g  s+    + ++a+    +++ ++ + l  +++++tw +G+ +   + W ++l+++       +l l g   a++GlG +  y +++++a + ++ +l+a Ga+
  MMETSP1174-20130828|7233_1  61 VVFGTTTGTAKRFANFVcegAQQQGlVSMGPALDAADADpwvwLDDTTDVSSLfiVVVMSTWTDGKGPisaQRWCAALEDMAndfrvgSLALMGARFAVYGLGSS-YYDDNWCGACKAIHANLTALGAT 188
                 666777777666666652221222211222233333333111234444444431166789**9999876676676666554311112268899**********75.7******************9985 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.2e-07    0.0013       2     112 ..      60     188 ..      59     197 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.2e-07
   TIGR01753   2 livYaSmtGnteeiAeiieeglkeagaev..dllevadvdk.......edlle.yDavllGcstwgdedleed....dflpfveele..eidlegkkvalfGsgdtay..efceavdkleerlkeaGak 112
                  +v++++tG     A+++ eg++++g       l++ad+d+       +d+ + + +v++ + t g++ +  +     ++++ +++   +  l g   a++G g + y  ++c+a +++++ l ++Ga+
  MMETSP1174-20130828|7233_1  60 HVVFGTTTGTAKRFANFVCEGAQQQGLVSmgPALDAADADPwvwlddtTDVSSlFIVVVMSTWTDGKGPISAQrwcaALEDMANDFRvgSLALMGARFAVYGLGSSYYddNWCGACKAIHANLTALGAT 188
                 58*********************9987431135666666542111111455556667899999999999995512223455555543224556677799999999888889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1064.71
//
Query:       MMETSP1174-20130828|7237_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|7236_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 2076.63
//
Query:       MMETSP1174-20130828|7241_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1145.48
//
Query:       MMETSP1174-20130828|7250_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1174-20130828|7251_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-10   35.7  41.8    5.2e-10   35.5  29.0    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    4.3e-06   22.5  36.1    7.5e-06   21.7  25.0    1.4  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        5.4    3.7  33.5       0.89    6.3  14.8    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5  29.0   3.8e-13   5.2e-10     233     485 ..       2     255 ..       1     257 [] 0.90

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.8e-13
   TIGR02168 233 rleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeele.sleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeee 485
                 rl ++++ l+e+e++ +++  +++++ +e +e+e++l+ l++ek  l+ ++e+lq+e + + ++++rleqe+  ++e+ +++++e+++l++q  ele++  +l+ e ++ +e +  lk e e +l ++ ++++a++e++e r++el++e+ +l  + + +   la+++a ++rle++l ++ +++  l+++  + e+kl+e++ +++e++++l   e+ + e++++l++ e+al+e+e++  + ++++ ++ ++
  MMETSP1174-20130828|7251_1   2 RLAAREAALQEMEKQSSSLLWQVQAACEEKNEAESSLALLMTEKDALDGKVEHLQTEHDHMMKDKQRLEQELGGMREQFASVSAEKDSLSHQSSELEAEAAKLRVENEAKDETIVALKHETEvALPQQNDSLRAAKEASELRVKELQDEMLTLGGDKNGIAGALANAEASVTRLEENLAEAVASKVDLESSLAATEEKLSEVQRNAHEHSKNLVAAEKDKREQATRLAAREAALQEMEKQSSRFHERVSELTSQ 255
                 567788999999999999999*********************************************************************99999999999999999999999999988876478899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888887766 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  25.0   5.5e-09   7.5e-06     265     508 ..       7     250 ..       1     257 [] 0.45

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.5e-09
   TIGR02169 265 ekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaa.elreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508
                 e+ l+e+ek+ + l  ++++ + ee+++  + l+ l  e   l+ ++++ + e  ++ + ++++e+e+  ++e+ ++++ e  +   +  +l++e ++l+ e e++ + + ++++e + +l ++ ++l+ ++e+ + + +el+ e   l   ++ +  +la+++a ++r+ee++ae  +++ +l+  +++ e+kl++++ + ++ +k+l + +++ ++   +l + e  l+e+e+q +  +e++ 
  MMETSP1174-20130828|7251_1   7 EAALQEMEKQSSSLLWQVQA-ACEEKNEAESSLALLMTEKDALDGKVEHLQTEHDHMMKDKQRLEQELGGMREQFASVSAEKDSLSHQSSELEAEAAKLRVENEAKDETIVALKHETEvALPQQNDSLRAAKEASELRVKELQDEMLTLGGDKNGIAGALANAEASVTRLEENLAEAVASKVDLESSLAATEEKLSEVQRNAHEHSKNLVAAEKDKREQATRLAAREAALQEMEKQSSRFHERVS 250
                 33444444444444444444.22333444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333331233344444555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555443 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  14.8   0.00065      0.89      78     257 ..      23     203 ..       1     204 [. 0.65
   2 ?    5.1  15.9    0.0015       2.1      78     237 ..      82     254 ..      79     257 .] 0.78

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00065
   TIGR01843  78 sveadaaelesqvlaleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseeleal.....rkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlael 257
                 +v+a+ +e ++  ++l++ ++  +a+  + e+++ + + +    ++++ ++++   ++++ ++++a+++sl +q  +leae+++l+ + +a  +++ +++ e e++     ++L + +  s+l++ el++e   l g+ +   + l++++a +++lee+l+e++++ + +++ +l  ++++l+e+
  MMETSP1174-20130828|7251_1  23 QVQAACEEKNEAESSLALLMTEKDALDGKVEHLQTEHDHMM---KDKQRLEQELGGMREQFASVSAEKDSLSHQSSELEAEAAKLRVENEAKDETIVALKHETEVAlpqqnDSLRAAKEASELRVKELQDEMLTLGGDKNGIAGALANAEASVTRLEENLAEAVASKV-DLESSLAATEEKLSEV 203
                 56777777777777777777777777777777666666555...4555555555555555666666666666666666666666666666666665555555544311111567777777777777777777777777777777777777777777777777777654.5677777777777765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0015
   TIGR01843  78 sveadaaelesqvlaleaevarlraeanseea.....iefpdillsae.d...avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaql.qalrqqleliseelealrkLkekglvsr...lelLelereraelqgelaeleaeleklkaeldeleeklqeleq 237
                 sv+a+++ l  q ++leae+a+lr+e ++++       +  +  l+++ d   a++e+ +  +++++++  +l + ++ +   +++ ea++ +l+++l +a+ ++++l s+ +   +kL e +  ++    +l ++e+  +e    la  ea l++++++ ++  e++ el++
  MMETSP1174-20130828|7251_1  82 SVSAEKDSLSHQSSELEAEAAKLRVENEAKDEtivalKHETEVALPQQnDslrAAKEASELRVKELQDEMLTLGGDKNGIAGALANAEASVTRLEENLaEAVASKVDLESSLAATEEKLSEVQRNAHehsKNLVAAEKDKREQATRLAAREAALQEMEKQSSRFHERVSELTS 254
                 6899999******************9777766778873444444454545677788888889999999999999999999999999999999998886245677888888888888888887765541124688889999999999999999999999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 640.02
//
Query:       MMETSP1174-20130828|7255_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 208.14
//
Query:       MMETSP1174-20130828|7253_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 315.97
//
Query:       MMETSP1174-20130828|7261_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1174-20130828|7259_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1912.06
//
Query:       MMETSP1174-20130828|7258_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1727.50
//
Query:       MMETSP1174-20130828|7262_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1857.28
//
Query:       MMETSP1174-20130828|7267_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1174-20130828|7266_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   14.2   0.0       0.01   14.0   0.0    1.2  1  TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI


Domain annotation for each model (and alignments):
>> TIGR01907  casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-06      0.01     151     207 ..      15      75 ..       2      76 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-06
   TIGR01907 151 ayrqqqfs.kddeksitfssvdfsGvLtv.tdaalfiqalskGiGks..kalGcGlllikp 207
                 a r   f+ + ++ +   s+v  + +  + +  +lf+ +  +G G++  +a+G G+l+ +p
  MMETSP1174-20130828|7266_1  15 ATRTATFRtRVSDDLCDASAVFNEAMGMLhEFSQLFKTRTASGTGRGlnRAMGNGMLSARP 75 
                 6677778877788888888887665544414579**********99766********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|7268_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1515.75
//
Query:       MMETSP1174-20130828|7270_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    5.0   7.6        2.8    4.9   5.3    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.3   0.00069       2.8      33      94 ..       9      80 ..       1      90 [. 0.57

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00069
   TIGR02794 33 ggeiiqAvlvDpaavaqqanrlqqqekkaakke.........pkpeepkqerqkk..leqqaeeakkkqaaeq 94
                + ++ qAv   +   + q+ r+qqq++ ++ ++         p p+++ q  +    le++ + + ++q++ q
  MMETSP1174-20130828|7270_1  9 N-PMNQAVASSTPPNEGQWPRQQQQQQVQRGEPplpmpvpsvPMPPHQSQHIIGGasLERNMQHQPQQQPQHQ 80
                3.577888888888899*********99999997877554443333333332222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 425.77
//
Query:       MMETSP1174-20130828|7273_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1296.32
//
Query:       MMETSP1174-20130828|7276_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    8.1   5.2       0.24    7.9   3.6    1.0  1  TIGR00190 thiC: thiamine biosynthesis protein ThiC


Domain annotation for each model (and alignments):
>> TIGR00190  thiC: thiamine biosynthesis protein ThiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.6   5.8e-05      0.24       1      46 [.       6      51 ..       6      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 5.8e-05
   TIGR00190  1 vtqleearkGviteemeavaekenleaelvrdevakGrvvipsnin 46
                + +++   +G++ +em++v   e+ +++ + d++akG+  + + ++
  MMETSP1174-20130828|7276_1  6 MKKIDMMENGIMVHEMKKVDVMEENTVKEMEDNIAKGENRMEKIMK 51
                56789999*****************************866654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       430  (0.104827); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|7280_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-07   26.3   1.4      7e-07   26.3   0.9    1.6  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.9   1.7e-10     7e-07     326     376 ..       4      54 ..       2      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.7e-10
   TIGR00797 326 pevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawvi 376
                 pev++l  + l++v+ +qp+ a++ vl+G+l+Gagd++++a ++vvs +++
  MMETSP1174-20130828|7280_1   4 PEVQALLGRTLMTVSCQQPLVATTLVLEGILVGAGDFRWLAGSMVVSSAIV 54 
                 89******************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 564.91
//
Query:       MMETSP1174-20130828|7281_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|7278_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2362.93
//
Query:       MMETSP1174-20130828|7287_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 195.71
//
Query:       MMETSP1174-20130828|7285_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1665.09
//
Query:       MMETSP1174-20130828|7289_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 749.70
//
Query:       MMETSP1174-20130828|7286_1  [L=1232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.65    6.7   1.2       0.97    6.1   0.8    1.1  1  TIGR03766 TIGR03766: conserved hypothetical integral membrane protein


Domain annotation for each model (and alignments):
>> TIGR03766  TIGR03766: conserved hypothetical integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.8   0.00024      0.97     280     352 ..     689     759 ..     682     772 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00024
   TIGR03766 280 tysilnkvisnqtivkiekerelpalhFinmGltgdGgyneedkeataklpekeekkkysikeikkRlkekgf 352
                 ++++ +k+++ q+ +k  k +  +  h +++G  gdG  n+e  ea+++l + +  +  +++ ++k+++++ +
  MMETSP1174-20130828|7286_1 689 MVQMQEKMMEMQETIK--KLQRQTSSHQVQLGFEGDGEHNAEFEEAKKELLNSTPLTYEEKASLSKKIEKLPV 759
                 4445555555555444..44477899************************99999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.18s 00:00:00.93 Elapsed: 00:00:00.66
# Mc/sec: 2463.80
//
Query:       MMETSP1174-20130828|7293_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|7290_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-07   25.3   1.0      1e-06   24.9   0.7    1.2  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.7   2.5e-10     1e-06     499     644 ..      14     155 ..       2     175 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.5e-10
   TIGR00870 499 lqimlgrmilrDllrFlfiylvvLlaFavalvqlykyydekkln..eesslkpirceieenaystlletlleLFwaiiGlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeeadeeWkfqraklvlsleeeg 644
                 l+  l++  + D+  Flfi++ v + F  ++  ly++         e ++  ++++ i++   s++l  +   F+  +G + + ++ +  +  ++ +lf+++v    ++ LN LIA++g++y + +e++       ra l+ ++ + +
  MMETSP1174-20130828|7290_1  14 LVTVLEKNFV-DMRAFLFIMVTVVIFFTAGFRLLYSTHPYYDGRddELYEDDTTVGVINK--GSMFLTMFGMGFLGNYGTGGIDDTASGSITPMFFVLFVLFV---GVIALNALIAILGDSYSQAQENRVASRNTNRAYLMSEYYDMM 155
                 6667888888.********************99998654444430034444445555544..33334444445666666666677777777777766666665...7889************99888877666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1174-20130828|7296_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 774.34
//
Query:       MMETSP1174-20130828|7297_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1488.54
//
Query:       MMETSP1174-20130828|7301_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.9   0.0     0.0019   15.4   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.7e-07    0.0019      82     176 ..      36     131 ..      27     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.7e-07
   TIGR03516  82 etktpetgDlvsfeyeikaldgdviyskeelg..pktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                 ++  p +gD+v ++y  + l ++  + + +lg  p  +++ + ++isG   ++  m  g+++ +++ +  ayG  G ed i +  +++ ++  + ik
  MMETSP1174-20130828|7301_1  36 DNIKPAQGDVVLMNYVGRVLGNEHEFDR-NLGgyPFEFTLGEGKVISGWEIAIPTMCVGDKAKLIIAAEFAYGEEGSEDDIAPGATLEFDIEFVAIK 131
                 5667999999999999999988887765.455235567788899*******************************************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 770.53
//
Query:       MMETSP1174-20130828|7295_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1550.87
//
Query:       MMETSP1174-20130828|7307_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|7304_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.24s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1363.89
//
Query:       MMETSP1174-20130828|7312_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|7316_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.2  19.9    1.4e-05   20.8  13.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00062   15.4  17.8    0.00082   15.0  12.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0063   13.4   5.5       0.01   12.7   3.8    1.3  1  TIGR00414 serS: serine--tRNA ligase
  ------ inclusion threshold ------
      0.053   11.5   8.2      0.029   12.4   3.7    2.1  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
      0.069   10.7  14.3     0.0041   14.7   4.9    2.4  3  TIGR02977 phageshock_pspA: phage shock protein A
        6.3    3.7  15.1        1.2    6.1   3.5    2.0  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  13.8     2e-08   1.4e-05     236     464 ..     143     369 ..     128     390 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2e-08
   TIGR02169 236 lekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklg.eeeqlavkekleelkaeiek.leraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlked 464
                  e+++ +ie e+  +eee   ++e++ + e +    ++ +e ++  i+ l  + e+ +v  +l++   ++ek  +++i++ +e+ ++++e+l  a++++++++    ++++++e+ + + + +++e++ l++ +e+lr el+ v+++  ++r ++++l +++  ++e  nelk e+    e +   ++ l ++k +l+ i+ +++ +e +   + + + +a+ + +q+k  
  MMETSP1174-20130828|7316_1 143 EEADLGEIEDEVGVVEEEEVMFTERVADAEVHDVINNEAREMIDGTIDPLQwKTEMERVGPRLKSKPWSLEKeWRSHIEQTKEHEKKIQETLPTAQVHMQNMST---QIQEAVEKMRTREQTMNSEFDGLRAGYEQLRDELKIVETKCSATRTNVNDLTNQMTTVEEANNELK-ETMNSREISATDTSPLVDIKRALQTIRGDVQTFELQIGVIGHTLMQAKLRQRQAKLA 369
                 45566666666666666666666666666666555566666666666665424455555555555555554314555566666666666666666666555544...456677888889999999999999999999999999999999999999999999999999999999.555566899999999999999999999999999999999988887766554444322 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  12.3   1.2e-06   0.00082     723     937 ..     140     353 ..     116     389 .. 0.39

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-06
   TIGR02168 723 leelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleele 937
                 + ++e +l e + e+  +e+e+   +er+a++e +    +e re  +  ++ ++  + e e+   +l+++   l++e+ +  e+ +e e++++ +l ++  + ++  +++++ +++++++ ++++++++ l++  e+l++e++  e+++++ ++++++l+++++++eea +el+e +++ + +  +  + + +++r+l+  r  ++++el++  + 
  MMETSP1174-20130828|7316_1 140 EVDEEADLGEIEDEVGVVEEEEVMFTERVADAEVHDVINNEAREMIDGTIDPLQ-WKTEMERVGPRLKSKPWSLEKEWRSHIEQTKEHEKKIQeTLPTAQVHMQNMSTQIQEAVEKMRTREQTMNSEFDGLRAGYEQLRDELKIVETKCSATRTNVNDLTNQMTTVEEANNELKETMNSREIS-ATDTSPLVDIKRALQTIRGDVQTFELQIGVIG 353
                 333333344444444444444444444444433333333333333333333332.22333333333333333334444444444444444433222222222233333333333333333333344444444444444444444444444444444444444444444444444332222211.12222233333333333333333333333332 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   3.8   1.5e-05      0.01       4     150 ..     191     336 ..     184     351 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
   TIGR00414   4 lkllrenlelvkeklkarglsveidlek.lselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeednlevkkegekksfdfkpk.dHvellekld 150
                 + + + ++e v  +lk++  s e +    +++++++ kk ++++ ++q + +++s +i+++ ++ + + ++++ e + l+   e+l  elk +e++ +    ++ +l+++ + v   ee+n e+k+++++++   + + + v++ + l+
  MMETSP1174-20130828|7316_1 191 PLQWKTEMERVGPRLKSKPWSLEKEWRShIEQTKEHEKKIQETLPTAQVHMQNMSTQIQEAVEKMRTREQTMNSEFDGLRAGYEQLRDELKIVETKCSATRTNVNDLTNQMTTV---EEANNELKETMNSREISATDTsPLVDIKRALQ 336
                 556778889999999999999888776515566677777888899999999999****99777777666779999999999999999999999999999999999999887666...66666777766664443333325566655555 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.5     1e+03     102     139 ..     129     166 ..     106     185 .. 0.57
   2 ?   12.4   3.7   4.2e-05     0.029      57     149 ..     214     316 ..     196     327 .. 0.59

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.5
   TIGR02894 102 lrkekeklkeeleslqkrneeLekeleklkkkksviee 139
                 l+++  +l+e     +    e+e e+  +++++ +  e
  MMETSP1174-20130828|7316_1 129 LHEDAPELEEAEVDEEADLGEIEDEVGVVEEEEVMFTE 166
                 44455555555555555555555555555555555444 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.2e-05
   TIGR02894  57 kkyeeaielakkqrkerkra..aesltle.......dviefLqnlk.etleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimd 149
                 k+++++ie+ k++ k+ +++  ++++ ++       + +e +++ + ++++e + lr   e+l++el+ ++++    +++++ l+++ +++ee  + l + m+
  MMETSP1174-20130828|7316_1 214 KEWRSHIEQTKEHEKKIQETlpTAQVHMQnmstqiqEAVEKMRTREqTMNSEFDGLRAGYEQLRDELKIVETKCSATRTNVNDLTNQMTTVEEANNELKETMN 316
                 5566666666666665544433334444400000004444444333033444556677777777777777777777888888888888888888888888776 PP

>> TIGR02977  phageshock_pspA: phage shock protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.91   6.2e+02       7      25 ..     173     191 ..     167     200 .. 0.85
   2 ?   14.7   4.9     6e-06    0.0041     111     204 ..     216     308 ..     206     320 .. 0.87
   3 ?   -1.0   0.1      0.39   2.6e+02     104     143 ..     331     372 ..     322     384 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.91
   TIGR02977   7 laDivnsnlnalldkaedP 25 
                 ++D++n    +++d + dP
  MMETSP1174-20130828|7316_1 173 VHDVINNEAREMIDGTIDP 191
                 5799999999999999888 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6e-06
   TIGR02977 111 veealekleediekLeekleeararqkalvlRekaAesrlkvreqldsekveealarfeqlerrvdeleaeaeaydlgkkksledefaeLeaed 204
                   +++e+++e  +k++e l +a+ + + +    ++A +++++req+ +++ +   a +eql   +  +e++  a++++ + +l+++++ +e+ +
  MMETSP1174-20130828|7316_1 216 WRSHIEQTKEHEKKIQETLPTAQVHMQNMSTQIQEAVEKMRTREQTMNSEFDGLRAGYEQLRDELKIVETKCSATRTNVN-DLTNQMTTVEEAN 308
                 56899*******************************************************************99886665.8888888776543 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.39
   TIGR02977 104 lekelaaveealekleediekLeekleeararqka..lvlRe 143
                 +++ l+++   ++  e +i  + + l +a+ rq+   l+ Re
  MMETSP1174-20130828|7316_1 331 IKRALQTIRGDVQTFELQIGVIGHTLMQAKLRQRQakLANRE 372
                 566677777778888888888888888887666541155554 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.5    0.0018       1.2      85     149 ..     212     276 ..     193     298 .. 0.59
   2 ?    1.9   2.6     0.032        22      67     151 ..     293     380 ..     284     392 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0018
   TIGR03752  85 lkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekess 149
                 l+ke ++  +++++ +++iq++l +++ +++++++q +e+++k++++ ++++++++++ a++e+ 
  MMETSP1174-20130828|7316_1 212 LEKEWRSHIEQTKEHEKKIQETLPTAQVHMQNMSTQIQEAVEKMRTREQTMNSEFDGLRAGYEQL 276
                 55555555555566666666666666666666666666666666666555555555444444333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.032
   TIGR03752  67 elkelrkelaklekeNeklkkenerlkkreesvd..eriqqaleaekkelkkekeqlkeeqa.kleelldelqkkledvaaekessee 151
                 ++++l+++++++e+ N++lk+  ++ + + ++++    i++al++ + ++++ + q     +  ++++l++ q kl++   ++ s++ 
  MMETSP1174-20130828|7316_1 293 NVNDLTNQMTTVEEANNELKETMNSREISATDTSplVDIKRALQTIRGDVQTFELQIGVIGHtLMQAKLRQRQAKLANREDGEVSKND 380
                 6789999*************98776555544444116889999999999988666654433324566666666666655555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1309.99
//
Query:       MMETSP1174-20130828|7317_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 2036.40
//
Query:       MMETSP1174-20130828|7319_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|7322_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.9   0.0      0.033   10.8   0.0    1.0  1  TIGR02578 cas_TM1811_Csm1: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE


Domain annotation for each model (and alignments):
>> TIGR02578  cas_TM1811_Csm1: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     8e-06     0.033     487     545 ..      19      74 ..       7      77 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8e-06
   TIGR02578 487 arrivasellilekeikkdesalkelsekalgeegekklgvLklDvDnlGeifasglkr 545
                   +iva  +l l++++ +      ++se +  e   k +++L+ D+ +lGei +   ++
  MMETSP1174-20130828|7322_1  19 SSSIVAAHILKLKEHVSNLPA---DASELFDTEAARKEIAILRHDISELGEISTHLTRN 74 
                 445566666666664333333...33333333345799**************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|7323_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|7321_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    5.8  17.0       0.69    5.3  11.8    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.8   0.00017      0.69     970    1003 ..     254     287 ..     232     307 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00017
   TIGR00927  970 gsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                  + d  ++e+eeeee+eeeeeee+ +++e+e+e +
  MMETSP1174-20130828|7321_1  254 EMDMEKAEQEEEEEDEEEEEEEDTQKDEDEDEPH 287 
                  4555666777777776666666555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1269.42
//
Query:       MMETSP1174-20130828|7327_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.9   0.6      0.041   11.7   0.4    1.1  1  TIGR04034 export_SdpA: antimicrobial peptide system protein, SdpA family


Domain annotation for each model (and alignments):
>> TIGR04034  export_SdpA: antimicrobial peptide system protein, SdpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4     1e-05     0.041      74     106 ..      15      47 ..       9      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
   TIGR04034  74 aqgvElgklleeiakkawkkCkedesaclekal 106
                 a+g El+++ +e+a+ka+++ ke+e a  e  +
  MMETSP1174-20130828|7327_1  15 AKGAELARVKAEVAEKARVEAKEAEKARREAEV 47 
                 789**********************98888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|7326_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1306.69
//
Query:       MMETSP1174-20130828|7328_1  [L=905]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-16   57.8  28.8    3.6e-11   40.7   0.3    4.2  4  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.9e-16   55.9  16.1      6e-11   39.8   6.3    6.1  5  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.5e-10   38.3   0.4    2.3e-05   22.0   0.0    4.1  4  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    6.1e-09   33.8   0.1    0.00011   19.8   0.0    4.1  4  TIGR01659 sex-lethal: sex-lethal family splicing factor
    4.4e-06   23.3   0.0    4.4e-06   23.3   0.0    5.0  5  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0041   14.0   0.2      0.013   12.3   0.0    1.9  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
  ------ inclusion threshold ------
       0.32    7.0   4.3       0.52    6.4   3.0    1.2  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   3.6    0.0037       2.1     336     491 ..       3     162 ..       1     177 [. 0.44
   2 !   40.7   0.3   6.2e-14   3.6e-11     144     376 ..     196     523 ..     185     544 .. 0.83
   3 ?   -0.5   0.0      0.19   1.1e+02     283     307 ..     576     600 ..     544     607 .. 0.65
   4 !   21.7   4.6   3.6e-08   2.1e-05     313     490 ..     649     867 ..     638     900 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0037
   TIGR01628 336 qeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmq.asaesrql.....sigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfk...inqmmlstqnpskpeapna.laqlaqqrlqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvka 491
                  e+A + v+ ++g+ + g+ L + +A  k +  +   ++    as e  ++     + g+ v+ aa+     ++++ ++   q+++ + + +++        ++m++ + ++++++p++ + + aq+r+++    +l  ++++   +  k+ +++++k+++++v+ 
  MMETSP1174-20130828|7328_1   3 REDAERCVKIMNGQTIRGRRLAIKVATDKSKGPSGTVRKVPDaASQEGERVkraasQEGERVKRAASQ----EGERVKKTASQEEERVKRAEQVSSVdkrQPENMTKRSAEQTSDEPETkVETPAQVRSRTLRVFGLSTKTTSA--HFLKRLRKVMRKHDKEAVER 162
                 589************************99988776555553324444444421122334444444322....222222222222222222222111111111222222222223334430333444443333222333222222..22233444444444444443 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 6.2e-14
   TIGR01628 144 eAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaiv.......kkdek...nrkrgfafvnyekaedAkkAveelngkkit....................................................................................laatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhg.kiln..gkPLyvalAqrkeqRkarLqqqfm 376
                 + + ++ g +++ + v v +  + ++ + ++++k   l v+n+  + t + +   F+kfG ++ +          +d +   ++ rgfafv++ ++ dA+k v++     +                                                                                     ++++++          +e+ +  k k +++ +   + a+gv ++v+ l  + ++  + e F+efG +  ++++ld +++  +g  FV f++q+ A+  +  ++  ++ln  g+P+ v  A  +++  + +qq+ +
  MMETSP1174-20130828|7328_1 196 KVMRRVDGHVIQGNTVAVRPELQLRNVKINHKAKLSRLIVRNVAFKATAEDIAGGFQKFGPLSEVHLptvpvpcPRDPSktrEQRRGFAFVQFLCHADAQKVVDSTSPVLVCgrevaadfaqakaayassaslgkegeqgkqedekkdgeessgeessssgeesdddeegekeeeessgeesddadddddndedkeDSSDDEEE---EGSDDDEKPKDQKSKKRKHLIRSGDVAKGVTVFVRGLPFEATQSAVTERFKEFGPVNRVSLVLDpHSGLPRGTAFVNFQEQDSAKGCIAAFNKgQALNvlGRPVEVLEAMGRDDVTSSVQQRKS 523
                 567789999999999999987776666689999***************************98776542222232355441115679******************9887776678888***********************************************************************9888766633333322...222333444444444455555556788*************************************7889***********************9559988668***************99999875 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.19
   TIGR01628 283 aqgvNlYvkNlddtvddekLrelFe 307
                    + l v+Nld  vd + L + F+
  MMETSP1174-20130828|7328_1 576 ISATRLSVRNLDGDVDTALLGKIFN 600
                 3455677888888888888877776 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 3.6e-08
   TIGR01628 313 tSakvmld...ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqr.keqRkarLqqqf.............mqasaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpea.........pnalaqlaqqr.lqaqgr....rnlnnrnrnvlgnm....................nkkqqnaaskanqanvk 490
                   akvm d   e+  S+gFGFV fs+   A +A++e+     n+ P y  +A r k++R + ++ +              m+ +  +r+ ++++ +   +++s +++a++++  +++ +++  + ++ + +    m s+  p  ++a         + + a+ ++   ++ +gr    +++++r                            ++k+++aa+++ q   +
  MMETSP1174-20130828|7328_1 649 AGAKVMQDltkENSPSRGFGFVEFSEHGHALAALREV-----NNNPKYTEFALRgKQAREKDVKLRPriivefavedrgkMKLQE-TRRAQQQHFILRQQQPSETKKAPSNRVSRGKRQREARRRRQEKEQADGGMSSEVVPAGKKAkvgeggegeASGSAKASHDSgSNFEGRrekgKGMRQRIGG----ArdettdellmeggteggdgkSRKRRKAATRSGQGGKN 867
                 5699**9985566679******************996.....678*******995566666555554568888988886633222.22222222222223244444555555555544444444444333322222222222211111222222222222222211122333333333333333211....11222344455556677777766666666665554333 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   9.3         7   4.1e+03      45     131 ..      52     139 ..      29     154 .. 0.53
   2 !   25.0   0.1   3.2e-09   1.9e-06     208     342 ..     221     364 ..     194     374 .. 0.76
   3 !   39.8   6.3     1e-13     6e-11      21     193 ..     336     506 ..     324     533 .. 0.70
   4 !   11.8   0.0   3.2e-05     0.019     256     282 ..     660     686 ..     650     689 .. 0.85
   5 ?   -8.4   9.6         7   4.1e+03      54     106 ..     719     773 ..     696     791 .. 0.60

  Alignments for each domain:
  == domain 1    score: -6.4 bits;  conditional E-value: 7
   TIGR01622  45 rdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeer.lkeelteeeRDartvfvlqlalkl 131
                 r ++   ++ +r k    +  +r ++  ++e er k+ ++  +v ++++e+  +r+ +++ +   ++ +t+++  +rt  v  l  k 
  MMETSP1174-20130828|7328_1  52 RVKRAASQEGERVKRAASQEGERVKKTASQEEERVKRAEQVSSVDKRQPENMTKRSAEQTSDEpETKVETPAQVRSRTLRVFGLSTKT 139
                 2222222233333333333333333333333333333333444454555566666666663332555566666667777776666665 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.2e-09
   TIGR01622 208 elsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlq.......kDpetG..rskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vteesdaslaskfeds.fdeseqsgldlnteereqldekldrdde 342
                 +++++++  +   +L v n+ f  t +++ + F+ FG++  v l+       +Dp     + +G+ F+qF     a++       + + GRe+   +a+    + s asl ++ e+   +++++ g +  +ee +   e+ d+d+e
  MMETSP1174-20130828|7328_1 221 NVKINHK--AKLSRLIVRNVAFKATAEDIAGGFQKFGPLSEVHLPtvpvpcpRDPSKTreQRRGFAFVQFLCHADAQKVVDSTSPVLVCGREVAADFAQAkAAYASSASLGKEGEQGkQEDEKKDGEESSGEESSSSGEESDDDEE 364
                 5667777..8889****************************9995333333378876512579**********************************9995666666655444332224455555666666666666555555533 PP

  == domain 3    score: 39.8 bits;  conditional E-value: 1e-13
   TIGR01622  21 rerdksrersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlke.elteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlal..tGqk..llgvPvivq 193
                 +++d++++++   s+  e+s+   e d d ++ +++ ++ ++ e +++ + + + e +++ + ++e+e       ++d++++++k ++ k      +     tvfv  l+  +++  + E F++ g+v  v l+ D +S+  +G a+v+F++++s +  +a+  +Gq   +lg+Pv v 
  MMETSP1174-20130828|7328_1 336 KQEDEKKDGE--ESSGEESSSsGEESDDDEEG-EKEEEESSGEESDDADDDDDNDEDKEDSSDDEEEE-----GSDDDEKPKDQKSKKRKHlIRSGDVAKGVTVFVRGLPFEATQSAVTERFKEFGPVNRVSLVLDPHSGLPRGTAFVNFQEQDSAKGCIAAfnKGQAlnVLGRPVEVL 506
                 3333333333..33333333313445555555.78888888888888888777776666665344333.....34677777777643333303345556679*******************************************************999975568862269***9985 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 3.2e-05
   TIGR01622 256 etGrskGyGFiqFsdaeeakeAleklN 282
                 e   s+G+GF++Fs+ ++a +Al ++N
  MMETSP1174-20130828|7328_1 660 ENSPSRGFGFVEFSEHGHALAALREVN 686
                 44569******************9998 PP

  == domain 5    score: -8.4 bits;  conditional E-value: 7
   TIGR01622  54 rdrdkyrdrerrsrkrre..serererekerrredevrrkrkeredrrerrekee 106
                  dr k + +e r++++++   +++++ e ++   ++v r +++re rr r+eke+
  MMETSP1174-20130828|7328_1 719 EDRGKMKLQETRRAQQQHfiLRQQQPSETKKAPSNRVSRGKRQREARRRRQEKEQ 773
                 3444444444444444431155566666666777888888888888888888832 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4     0.021        12     141     249 ..       3     112 ..       2     146 .. 0.51
   2 ?    2.0   0.0     0.045        26      39      66 ..     275     302 ..     228     328 .. 0.67
   3 !   22.0   0.0   3.9e-08   2.3e-05      83     153 ..     422     492 ..     410     515 .. 0.91
   4 !    5.2   0.0     0.005       2.9     298     331 ..     651     686 ..     645     695 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.021
   TIGR01661 141 reeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaai.aplhkaaakfrlsaldflavlakrlqqhavaqq...aaaqrasplaa 249
                 re+a+r +k +nG+t +g   ++++k a + s + + +   +++   +++  rv r+   ++     ++ ++ ++++ +a +  + + +  q ++v ++   + ++r + +++
  MMETSP1174-20130828|7328_1   3 REDAERCVKIMNGQTIRGR--RLAIKVATDKS-KGPSGTVRKVPDAASQEGERVKRAASQEGERVkRAASQEGERVKKTASQEEERVKRAEQVSSVDKRqpeNMTKRSAEQTS 112
                 7899999999999999886..56666676666.44555555566555555666666555544333033333355555555544444423333333322200022233333333 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.045
   TIGR01661  39 kvtGqslGyGfvnyvreedaekavnsln 66 
                 k + q  G+ fv ++ + da+k v+s  
  MMETSP1174-20130828|7328_1 275 KTREQRRGFAFVQFLCHADAQKVVDSTS 302
                 5568899999999999999999998765 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 3.9e-08
   TIGR01661  83 ssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnG 153
                 s d  kg  ++v GlP + tq+ + + f++fG +    ++ d  ++l +G  f+ f +++ a+  i a+n 
  MMETSP1174-20130828|7328_1 422 SGDVAKGVTVFVRGLPFEATQSAVTERFKEFGPVNRVSLVLDPHSGLPRGTAFVNFQEQDSAKGCIAAFNK 492
                 78899*******************************99****************************99984 PP

  == domain 4    score: 5.2 bits;  conditional E-value: 0.005
   TIGR01661 298 vkiirdlttnk..ckGygfvsmtnydeaalailsln 331
                  k+++dlt ++   +G+gfv  +++  a  a++ +n
  MMETSP1174-20130828|7328_1 651 AKVMQDLTKENspSRGFGFVEFSEHGHALAALREVN 686
                 588888865542358888888888888888888777 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0088       5.2     160     184 ..       4      28 ..       1      38 [. 0.85
   2 ?    3.5   0.0     0.016       9.5     150     185 ..     282     317 ..     230     354 .. 0.81
   3 !   19.8   0.0   1.8e-07   0.00011     187     257 ..     422     492 ..     411     507 .. 0.92
   4 ?   -0.5   0.0      0.27   1.6e+02     138     170 ..     652     686 ..     647     700 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0088
   TIGR01659 160 adsqraikslngitvrnkrlkvsya 184
                  d+ r +k +ng t+r +rl +  a
  MMETSP1174-20130828|7328_1   4 EDAERCVKIMNGQTIRGRRLAIKVA 28 
                 699****************977665 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.016
   TIGR01659 150 gyafvdfaseadsqraikslngitvrnkrlkvsyar 185
                 g+afv+f + ad+q+ ++s   + v  + +   +a+
  MMETSP1174-20130828|7328_1 282 GFAFVQFLCHADAQKVVDSTSPVLVCGREVAADFAQ 317
                 777888888888888777777777766666666654 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 1.8e-07
   TIGR01659 187 ggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnn 257
                  g+  k   ++v  lp   t+  +   f  +g + +  ++ d ++g prg afv f+ ++ a+  i+a+n 
  MMETSP1174-20130828|7328_1 422 SGDVAKGVTVFVRGLPFEATQSAVTERFKEFGPVNRVSLVLDPHSGLPRGTAFVNFQEQDSAKGCIAAFNK 492
                 4677888999**********************************************************995 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.27
   TIGR01659 138 rimrdykt..gysfgyafvdfaseadsqraiksln 170
                 ++m+d       s g++fv+f+    ++ a++++n
  MMETSP1174-20130828|7328_1 652 KVMQDLTKenSPSRGFGFVEFSEHGHALAALREVN 686
                 56666543114578999999999988888888777 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   8.5      0.58   3.4e+02       9     197 ..      59     251 ..      48     297 .. 0.67
   2 ?  -17.2  18.5         7   4.1e+03      10      89 ..     337     418 ..     329     428 .. 0.52
   3 !   23.3   0.0   7.4e-09   4.4e-06     299     359 ..     431     491 ..     424     500 .. 0.94
   4 ?   -1.8   0.0      0.31   1.8e+02     334     359 ..     661     686 ..     648     708 .. 0.76
   5 ?  -10.4   8.5         7   4.1e+03      26      92 ..     741     773 ..     697     791 .. 0.46

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.58
   TIGR01642   9 rEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds......rrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqak..asqvansvpgiaqkssltstekllaegskitdlpvl...aveqqatrkaRrlyvgniPpeakeeavvdFf 197
                 +E +r + r  s+e +R ++   + + +R +r  ++    d+R+ +++ ++s ++ s+e +       + rSR         ++  ++  +r+rk+ ++++k     +    +v+  + e +++   +  +  +    +g a    +      +++g++++  p l    v+ + + k  rl+v n+ ++a+ e++   f
  MMETSP1174-20130828|7328_1  59 QEGERVK-RAASQEGERVKKTASQ-EEERVKR-AEQVSSVDKRQPENMTKRSAEQTSDEPETkvetpaQVRSRTLRVFGLSTKTTSAHFLKRLRKVMRKHDKEA---VERVEEVAGEETEGAEEWWPRgrMFRIV-CASGKASVKVMRRVDGHVIQGNTVAVRPELqlrNVKINHKAKLSRLIVRNVAFKATAEDIAGGF 251
                 3333333.3356666665544333.3335555.46666778999999999999888888877667766666666633333444445555788888888888874...4445556666666665554330033333.3567777777777777889******999995444555566666799******999999987655 PP

  == domain 2    score: -17.2 bits;  conditional E-value: 7
   TIGR01642  10 EksrerdrdkskeRsRkRsrdr.srdRdRdrrdrrrs.rrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssses 89 
                  +  ++d++ s+  +   s ++ ++d + ++++ + s    d+ d d  + ++++ ss++e+ ++   d+++++++s+++++
  MMETSP1174-20130828|7328_1 337 QEDEKKDGEESSGEESSSSGEEsDDDEEGEKEEEESSgEESDDADDDDDNDEDKEDSSDDEEEEGSDDDEKPKDQKSKKRKH 418
                 3333333333333333333333033333344433333144566677777777777777777777777777777777776653 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 7.4e-09
   TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLn 359
                 +++ +LP++ ++  v e  ++FG++    l+ d + Gl +G aF+++++   ++  iaa n
  MMETSP1174-20130828|7328_1 431 VFVRGLPFEATQSAVTERFKEFGPVNRVSLVLDPHSGLPRGTAFVNFQEQDSAKGCIAAFN 491
                 8*********************************************************998 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.31
   TIGR01642 334 tGlsKGyaFceykdssvtdlAiaaLn 359
                 +  s+G++F+e+ +   +  A+  +n
  MMETSP1174-20130828|7328_1 661 NSPSRGFGFVEFSEHGHALAALREVN 686
                 45689*******99887766665555 PP

  == domain 5    score: -10.4 bits;  conditional E-value: 7
   TIGR01642  26 kRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrssssesker 92 
                 + + ++ +                                 +  s+r SR + r+r+  +++++ke+
  MMETSP1174-20130828|7328_1 741 QQQPSETK---------------------------------KAPSNRVSRGK-RQREARRRRQEKEQ 773
                 11111111.................................11223333333.22222222222222 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.2e-05     0.013       5      70 ..     431     503 ..     428     508 .. 0.78
   2 ?   -4.2   0.1       2.2   1.3e+03     218     262 ..     725     768 ..     720     781 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-05
   TIGR01649   5 vHvRnlpeevveadlvelliefGkvsyv.lvl.kg....krqAlvEfedeesAkalVnfatsvp.iqirGrtv 70 
                 v vR+lp e +++ + e  +efG+v  v lvl ++    +  A+v f++ +sAk ++    + + +++ Gr+v
  MMETSP1174-20130828|7328_1 431 VFVRGLPFEATQSAVTERFKEFGPVNRVsLVLdPHsglpRGTAFVNFQEQDSAKGCIAAFNKGQaLNVLGRPV 503
                 89***********************99834553332222458**************98766544267777765 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 2.2
   TIGR01649 218 dveleqtaaqrqdallrdrPssygdavdglssrtgalaplalgdr 262
                 + ++ + a+q++ +l +++Ps+ ++a +   sr g  +  a ++r
  MMETSP1174-20130828|7328_1 725 KLQETRRAQQQHFILRQQQPSETKKAPSNRVSR-GKRQREARRRR 768
                 333344444444477788999988644444444.55555555555 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.0   0.00089      0.52     660     760 ..      78     215 ..      57     227 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00089
   TIGR04154 660 llveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafaeeee...............ealehyRlvhesstsatseeeskqk...........................VKiFErVkGAtikGtapaeetvtiev 760
                 ++ ++ee+ +++++++  +k++ en+++  a++++d+ +++ e+ a+  +               + l+++R v  ++ +++ e  ++ +                           VK+  rV+G +i+G+     tv ++ 
  MMETSP1174-20130828|7328_1  78 TASQEEERVKRAEQVSSVDKRQPENMTKRSAEQTSDEPETKVETPAQVRSrtlrvfglstkttsaHFLKRLRKVMRKHDKEAVERVEEVAgeetegaeewwprgrmfrivcasgkasVKVMRRVDGHVIQGN-----TVAVRP 215
                 333444444444444444444444444444444444444333333333336788888888899888888888888888887777766666788899999999999**************************9.....444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.98u 0.21s 00:00:01.19 Elapsed: 00:00:00.75
# Mc/sec: 1592.67
//
Query:       MMETSP1174-20130828|7340_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   21.8   4.9       0.02   12.6   0.2    3.2  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   4.9e-06      0.02       6      28 .]      12      34 ..      11      34 .. 0.90
   2 !    9.9   0.0   3.5e-05      0.14       6      28 .]      39      61 ..      38      61 .. 0.94
   3 ?   -2.1   0.1      0.22   9.1e+02       6      11 ..      94      99 ..      93      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.9e-06
   TIGR01376  6 lFsnNsakgsGGAIyatgkisis 28
                +F +Nsa+ +GG +y  ++++is
  MMETSP1174-20130828|7340_1 12 SFGSNSAADYGGVLYVHSSAVIS 34
                5779************9999886 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 3.5e-05
   TIGR01376  6 lFsnNsakgsGGAIyatgkisis 28
                +F +Nsa  sG  +ya++++++s
  MMETSP1174-20130828|7340_1 39 SFASNSASRSGVVLYADDSVTLS 61
                7****************999986 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.22
   TIGR01376  6 lFsnNs 11
                +F +N+
  MMETSP1174-20130828|7340_1 94 SFLSNT 99
                899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 455.13
//
Query:       MMETSP1174-20130828|7333_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.9   0.0       0.04   11.6   0.0    1.1  1  TIGR03653 arch_L6P: archaeal ribosomal protein L6P


Domain annotation for each model (and alignments):
>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.9e-06      0.04      46     117 ..       9      79 ..       3      90 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.9e-06
   TIGR03653  46 vvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkveg..nkvvienflGekaprtaki 117
                 ++l +  a+k+ +++ ++     +  +kGv  gf+  l+  Y H  + +k+eg  +k  ++ +lG++ + + k 
  MMETSP1174-20130828|7333_1   9 ILLASPRAKKRARRMTEAA--PSRLYVKGVMLGFKRGLRNQYCHTSL-IKIEGveDKKDVDFYLGKRVAYIYKC 79 
                 4555555555555555555..555679*****************874.555553388999*****998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|7343_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   15.6   0.0     0.0023   15.6   0.0    5.7  6  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2     0.052   2.1e+02      13      22 ..     139     148 ..     137     152 .. 0.78
   2 !    4.6   0.4    0.0017         7       7      21 ..     162     176 ..     159     179 .. 0.86
   3 !   15.6   0.0   5.7e-07    0.0023       4      22 ..     193     211 ..     191     213 .. 0.87
   4 !    4.4   0.3    0.0019       7.9       8      19 ..     227     237 ..     227     238 .. 0.79
   5 ?    1.1   2.0     0.022        92       6      18 ..     250     262 ..     247     264 .. 0.92
   6 ?   -3.1   0.0      0.46   1.9e+03       5      12 ..     281     288 ..     280     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.052
   TIGR01376  13 kgsGGAIyat 22 
                  ++GG I++ 
  MMETSP1174-20130828|7343_1 139 STRGGVIAMR 148
                 569****976 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0017
   TIGR01376   7 FsnNsakgsGGAIya 21 
                 F +N a+ +GGA ya
  MMETSP1174-20130828|7343_1 162 FRSNAAEWYGGAVYA 176
                 77888888******8 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 5.7e-07
   TIGR01376   4 tilFsnNsakgsGGAIyat 22 
                 + lF+nN+a  +GGA + +
  MMETSP1174-20130828|7343_1 193 DCLFENNTALYNGGAVHFN 211
                 789************9876 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0019
   TIGR01376   8 snNsakgsGGAI 19 
                 ++N a+ +GG+I
  MMETSP1174-20130828|7343_1 227 EGNRAT-HGGGI 237
                 58****.78777 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.022
   TIGR01376   6 lFsnNsakgsGGA 18 
                 +F +N  +  GGA
  MMETSP1174-20130828|7343_1 250 SFAGNVGASAGGA 262
                 8***********9 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 0.46
   TIGR01376   5 ilFsnNsa 12 
                  +F +N a
  MMETSP1174-20130828|7343_1 281 CVFHGNEA 288
                 5899**88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1274.64
//
Query:       MMETSP1174-20130828|7341_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-49  163.2   0.0    1.3e-48  162.7   0.0    1.2  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0   3.3e-52   1.3e-48       1     170 [.     115     294 ..     115     295 .. 0.96

  Alignments for each domain:
  == domain 1    score: 162.7 bits;  conditional E-value: 3.3e-52
   TIGR00636   1 ytktGDkGktklaggsrvsKdserveayGtvDElnsflGvalskl..keeelkeelekiqndlfdlgadlatksekk........kiteekvkfleeridkyreeleelkkFvlPGGtkaaaalhvaRtvaRRaERevvkllkeeeinekvlvylNRlSdllfvlArvvnkrkgkeevlw 170
                 yt+tGD G+ +l++g+r sKds+  ea+Gt+DEl sf+  a+++   +e+ + +ele i   l d+++ +at+ +          +++ ++v+ leerid+++++l++l++F++PGG +a+aalh++Rtv+RRaER++v l++  ei ++vl+y+NRlSd+lf++Ar++ ++ + +e l+
  MMETSP1174-20130828|7341_1 115 YTRTGDGGTSQLFTGERRSKDSDAFEAMGTIDELISFMAAAKEECliEENGVASELEDILSRLMDVSSHVATPLSSArshhlkrtNFDLSHVTGLEERIDTMTNALPPLSSFIIPGGGRASAALHICRTVCRRAERRMVVLNECREIDASVLKYMNRLSDFLFLAARTATHHMEGREMLY 294
                 8******************************************98888899*********************98877789999999999********************************************************************************99988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1360.74
//
Query:       MMETSP1174-20130828|7345_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 429.81
//
Query:       MMETSP1174-20130828|7348_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1250.23
//
Query:       MMETSP1174-20130828|7353_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|7354_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|7355_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-111  371.3   0.0   1.7e-111  371.1   0.0    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    3.2e-39  132.7   0.1    9.3e-34  114.7   0.0    2.0  2  TIGR02079 THD1: threonine dehydratase
    4.7e-22   76.3   0.0    8.1e-22   75.5   0.0    1.4  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    1.5e-10   38.4   0.6    1.9e-10   38.0   0.4    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
      0.005   13.9   0.0     0.0071   13.4   0.0    1.2  1  TIGR00260 thrC: threonine synthase


Domain annotation for each model (and alignments):
>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.1   0.0    2e-114  1.7e-111     207     499 .]       3     299 ..       1     299 [. 0.95

  Alignments for each domain:
  == domain 1    score: 371.1 bits;  conditional E-value: 2e-114
   TIGR01124 207 lkqaleaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlkkyvakkgiedktlvailsGanlnfdrlryvseraelGeqreallavtipeekGsllkfvevlGeraitefnyrladdekahifvGvql.....aeeeerkellarleeagykvvdltddelaklhvrylvGGraa..kvenerlysfefperpGallkfletlqaewnislfhyrnhGadyGrvlvglevpdeeaeefeqflaelgyryedetenpayrlfl 499
                 ++++lea + v+ldqvG+fadG avk+vG+etfrlc+ ++d++v+v tde+caaik  f+dtr+vlepaGala+aG+kky+a + ++++t+va +sGan++f+rlr+vsera+     e+ll+v ipe++G+++k+ +++  r++tef+yr+  + +a + +  q+     ++ ++++ ++++l++agy+v dl +de+ k h+rylvGGr+   +  +erly+f+fpe pG l +fl+ l+  wn++lfhyrnhG + G+vlvg++v+++++e+f+ fl++lgy+  det+n++y  fl
  MMETSP1174-20130828|7355_1   3 MTASLEANKVVTLDQVGIFADGAAVKTVGSETFRLCQMHVDEMVTVSTDEICAAIKAGFNDTRCVLEPAGALAIAGMKKYLAMHRMTGRTVVATTSGANMDFNRLRFVSERAD---SSETLLSVRIPEKPGAFRKLYKLISPRNVTEFSYRYHTARHADVIISFQAigdvsERGQDAAYMISTLRDAGYAVADLNEDEFGKAHLRYLVGGRPPigSNLDERLYRFNFPETPGCLGHFLKALNRGWNVTLFHYRNHGENIGKVLVGIDVSESDEEKFQAFLEDLGYEWFDETSNESYAQFL 299
                 899************************************************************************************************************96...6789***************************************99988752222234599999********************************65225678*****************************************************************************9997 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   1.1e-36   9.3e-34     209     402 ..       2     196 ..       1     203 [. 0.88
   2 !   16.1   0.0   9.6e-07   0.00079     331     388 ..     224     281 ..     218     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 114.7 bits;  conditional E-value: 1.1e-36
   TIGR02079 209 slkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaaleels..eeikgktvvcvvsGgnndierleeikersllyeGlkhyflvkfpqraGalreflndvlGPndditkfeyvkksnretGevl....iGielsdkedfeGllerlkaadieyeainen 402
                  ++asl+a++vvtld++  f dGaavk vG+ +f+ ++  vde+++v+ +++c++i   +n+   v+ePaGal+ia+++++   ++++g+tvv+  sG+n d++rl  + er+   e l   + v++p ++Ga+r++ + ++ P  ++t+f y  +++r+   ++    iG   +  +d + ++  l+ a+  + ++ne+
  MMETSP1174-20130828|7355_1   2 GMTASLEANKVVTLDQVGIFADGAAVKTVGSETFRLCQMHVDEMVTVSTDEICAAIKAGFNDTRCVLEPAGALAIAGMKKYLamHRMTGRTVVATTSGANMDFNRLRFVSERADSSETL---LSVRIPEKPGAFRKLYK-LISPR-NVTEFSYRYHTARHADVIIsfqaIGDVSERGQDAAYMISTLRDAGYAVADLNED 196
                 599****************************************************************************9865689***************************888776...679***********988.88887.69********99987665533334444455677788888888888888888776 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 9.6e-07
   TIGR02079 331 vkfpqraGalreflndvlGPndditkfeyvkksnretGevliGielsd..kedfeGller 388
                  +fp  +G l +fl+  l    ++t f+y +++  + G+vl+Gi++s+  +e+f+ +le 
  MMETSP1174-20130828|7355_1 224 FNFPETPGCLGHFLK-ALNRGWNVTLFHY-RNHGENIGKVLVGIDVSEsdEEKFQAFLED 281
                 69************9.889999******9.568899*********975115678888875 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   9.8e-25   8.1e-22     189     378 ..       3     190 ..       1     192 [. 0.84
   2 ?   -3.2   0.0      0.82   6.8e+02     314     371 ..     228     282 ..     225     287 .. 0.58

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 9.8e-25
   TIGR01127 189 lveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavleek.vd.vkgkkvavvvsGGnidlnllekiiekgLvksgrkvkietvlkDkPGaLkklleviaekranivkiehd.rlskeialgaakvelelevkgkehleellktlrdkgyev 378
                 +++sl+++k+++ ++v   aDG avk++g+ tf + + +vDe+v+v+ +ei+ ai   ++ ++ v e+aGa ++a + +   ++ + g++v+   sG n+d n l  + e+          +++ +++kPGa++kl + i  ++   ++ ++    + ++ ++++ +  ++  +g++    + +tlrd gy v
  MMETSP1174-20130828|7355_1   3 MTASLEANKVVTLDQVGIFADGAAVKTVGSETFRLCQMHVDEMVTVSTDEICAAIKAGFNDTRCVLEPAGALAIAGMKKYLaMHrMTGRTVVATTSGANMDFNRLRFVSERADS---SETLLSVRIPEKPGAFRKLYKLISPRNVTEFSYRYHtARHADVIISFQAIG-DVSERGQDAAY-MISTLRDAGYAV 190
                 899************************************************************************987643133689******************999887533...334577889**************9887766666554145667888888775.67777777655.557889999876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.82
   TIGR01127 314 DkPGaLkklleviaekranivkiehdrlskeialgaakvelelevkgkehleellktl 371
                 ++PG L + l++++ ++ n+   ++ +  +  ++g+  v +++   ++e+ +  l++l
  MMETSP1174-20130828|7355_1 228 ETPGCLGHFLKALN-RGWNVTLFHYRNHGE--NIGKVLVGIDVSESDEEKFQAFLEDL 282
                 67888888887764.455665444443333..45666677777666666655555444 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.4   2.4e-13   1.9e-10     208     310 ..       3     106 ..       1     112 [. 0.85

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 2.4e-13
   TIGR02991 208 mkaslkaGrpvlveelptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaal...laGkikvkGpivv.lvsGrnidmdl 310
                 m asl+a + v++++   +ad  G  +      tf+lc+  +de+v +s dei a+i+  + + r ++e aGa+ ia +   la   +++G++vv   sG n+d + 
  MMETSP1174-20130828|7355_1   3 MTASLEANKVVTLDQVGIFAD--GAAVKTVGSETFRLCQMHVDEMVTVSTDEICAAIKAGFNDTRCVLEPAGALAIAGMkkyLAMH-RMTGRTVVaTTSGANMDFNR 106
                 99******************9..7788888999*****************************************999873324443.466766552789***99875 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.6e-06    0.0071     267     314 ..      40      86 ..      10     105 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.6e-06
   TIGR00260 267 gnledlkesvsdeeileaikklaeeegyllephtavavaalkklvekg 314
                  +++++  +vs +ei  aik   +    +lep++a a+a++kk ++  
  MMETSP1174-20130828|7355_1  40 MHVDEM-VTVSTDEICAAIKAGFNDTRCVLEPAGALAIAGMKKYLAMH 86 
                 444444.589*********************************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1150.19
//
Query:       MMETSP1174-20130828|7357_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1158.10
//
Query:       MMETSP1174-20130828|7359_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|7358_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|7356_1  [L=1023]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1034.2   0.0          0 1034.0   0.0    1.0  1  TIGR00422 valS: valine--tRNA ligase
   1.6e-104  348.6   0.0    3.7e-73  244.9   0.0    2.2  2  TIGR00392 ileS: isoleucine--tRNA ligase
    1.5e-56  189.8   0.0    2.1e-25   86.7   0.0    3.3  3  TIGR00395 leuS_arch: leucine--tRNA ligase
    1.7e-43  146.7   1.3    2.8e-15   53.3   0.0    6.3  5  TIGR00396 leuS_bact: leucine--tRNA ligase
      9e-26   88.5   0.0    1.2e-12   45.2   0.0    3.7  3  TIGR00398 metG: methionine--tRNA ligase
     0.0002   18.4   0.0    0.00058   16.9   0.0    1.7  2  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1034.0   0.0         0         0       2     861 ..     113    1003 ..     112    1005 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1034.0 bits;  conditional E-value: 0
   TIGR00422    2 ekkYdpkevekklyekweesgvfkpdedeekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkgklyyikyklangsgkdklvvATTRPEtllgdtavaVhPeDerykelvgkkvilPlvnrkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneeageyqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWleelkdWcISRQliwghriPvwy......eketgevvvakeeaeekektklgs...keleqdeDVLDTWfsSslwplstlgWpeekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledk................keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkek....adsimlasyPeveeel...vdekaekefelvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkklikle..evevvsekee....eeeava.kvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekek 861 
                  +++Yd+++vek+ly++we+sg fkp+ + +k+ ++i +PPPnvTG+lH+GHa+ v+lqDi++R++rm+   +l+lpG+Dhagiatq+ vEk l+a+g +++++gre+f+e+++e+ke++g++i+eq++rLG+s+dwsrerfTl++++skav+eaFvr++e+gl++rg+r+vnw+p l+ta+sdlEve+ e++g+lyy+ky la ++  d++ vATTRPEt+lgd+av VhPeD ry++++gk+v +P  +r+ip+iaDe+vd+efGtG++k+tpahD+nDye+gkrh le+ini+++dg++n++ g+y+gl+r +ar+++ +d+++egl+ k ep++q+v+ ++R+++v+Ep++s+QWfV+++ +a +a++a++ ++ei+++P rfek+   Wle+ +dWc+SRQl+wghriPvw+      ++++++  va++ea + e +++++   +eleqd+DVLDTWfsS+lwp+ tlgWpee+ dl +fypt+ll+tg+DI+ffWvarm++++++ltg+ Pf+ +++hglvr  +g KmSK +gNvidPld i+ yGaDalR+ l++ v++G+Di l+++kvea+r+F+nKlwn  r+ + +l++                   +e + + l la+r+i+s+ +el ++v+  l  y++a++ + +y+F+W++++dwyiE++K+++   + e+ +   ++l++v+d++lrllhp +P++te ++q+l+++    ++ +m+a++P+ + e    +d++a ++f  +  +++++Rn +ae+++++ +k+++ +  ++     ++++++a+ ++ l +++   ++   e +e      +av+  v++++e ++p  +l ++ake ++l+k++ k++k++   ek+l +e+f+kka  e+++++ e 
  MMETSP1174-20130828|7356_1  113 ATQYDFNAVEKDLYKWWESSGHFKPKPNPDKKGYTIPMPPPNVTGKLHMGHAMFVALQDIMARFHRMRQRPTLWLPGTDHAGIATQMLVEKDLAAQGLSRKEIGREAFLERAWEYKEDKGGAIVEQMRRLGASADWSRERFTLEPDMSKAVREAFVRFHEQGLVFRGSRMVNWSPSLQTAVSDLEVEFSEEQGTLYYFKYMLAGSD--DYIPVATTRPETILGDSAVCVHPEDPRYQQFIGKTVLVPSQGREIPVIADEYVDREFGTGALKITPAHDQNDYEIGKRHDLEMINIMNKDGTINKAGGKYTGLDRYDAREQLWADMDTEGLVIKAEPHTQRVPRSQRGGEVIEPMVSTQWFVDTKDMAAQAVDAVK-NKEITILPPRFEKMWYYWLESPRDWCVSRQLWWGHRIPVWFlkgsdrDSTDVDFFVARSEADAYEMAREKYgsdVELEQDDDVLDTWFSSGLWPFATLGWPEETADLTQFYPTTLLETGYDILFFWVARMVMMGINLTGKPPFEVIYMHGLVRSSDGTKMSKTKGNVIDPLDTIDTYGADALRYSLVTGVTPGQDIPLSMEKVEANRNFANKLWNSGRYLIGKLQGIqaedpalweslavkepMGME-ELMALPLAERYIVSRCHELATKVTAGLLAYNMADSGSLIYQFLWDEYADWYIEASKTKT---DGEAAQVSLKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTadstNEALMTATWPKLDDESdlsTDPEAMAHFTALQALVRSIRNARAEYQVEPGKKIAAQVVVTDP-SFLATIESEASAVALLGRIDpdGLTWSLERQEsmssDGKAVHlVVAEGLEAFLPFDKLVDAAKERKRLNKQATKIEKDVAGLEKRLGSEGFLKKASPEIIQENVEA 1003
                  589*********************************************************************************************************************************************************************************************************88..9*********************************************************************************************************************************************************************.7********************************************9888999999**999988777654444489************************************************************************************************************************************************9988876556788999885543322222.33456789**************************************************9...33456778899*****************************98888889********9988533379*********************************99999888.5777888777777766665422555443333322324455541567889**************************************************9998876 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   1.2e-32   7.9e-30       3     245 ..     113     342 ..     111     354 .. 0.92
   2 !  244.9   0.0   5.4e-76   3.7e-73     311     838 ..     363     879 ..     346     897 .. 0.85

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 1.2e-32
   TIGR00392   3 eekanlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpd 245
                 +++++++ +e++++k we++  f+   k + dkk +++   PP  +G++h+gha+  +l Di+ r+++m+   +   pG D  G+   + vek+l +++ ++ e    e f e++ e+   +  +  eq++rlg   D++ +  tl+++  ++v e++ + +e+gl++r+ ++v+wsp+l+ta ++ Eve +e   ++ +  y k+ ++++ + +      + + Tt P T++   a++v+p+
  MMETSP1174-20130828|7356_1 113 ATQYDFNAVEKDLYKWWESSGHFKP--KPNPDKKGYTIPMPPPNVTGKLHMGHAMFVALQDIMARFHRMRQRPTLWLPGTDHAGIATQMLVEKDLAAQGLSRKEIGR-EAFLERAWEYKEDKGGAIVEQMRRLGASADWSRERFTLEPDMSKAVREAFVRFHEQGLVFRGSRMVNWSPSLQTAVSDLEVEFSE---EQGTLYYFKYMLAGS-DDY------IPVATTRPETILGDSAVCVHPE 342
                 6799*******************96..55688899**************************************************************9666555544.889999999999999999****************************************************************766...888888999999853.444......8899****************96 PP

  == domain 2    score: 244.9 bits;  conditional E-value: 5.4e-76
   TIGR00392 311 fvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkeknlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeellee..ikkvkwvpekgekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkp.............eekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeek..keesvhlnefpevdeeavdealeasmklvkeiveavlalrdkvnk 838
                   v+ +++V  e GtG+  + P+h ++Dye+gk+++l e+++ ++++g+ ++   +       +++ d ++a +++ + +++++l++kae  + + P   R  + +    ++qwF+++k++ ++++++  +k+++ +p + ek    +le+ +dWc+SRq  WG  ipvw  +     ++++ ++       +++          d  + + +k+++  e+++  dvlD Wf SG  p a+l  ++e+ + ++ +p  l+  G D    W     ++++ l++k p++ + +hG+v +++G KMSK +gNv+dp ++i++yGaD+lR+ +++   p +d+ +s e ++  ++++ + l+n+ r+l   ++L++++                 +++   l+   r+i+s+ ++l+++v++ l +y+++   + + +f+ +e + wY+++sk ++  e+++ +     ++l+++++t ++ll p +p+++e ++q+l++++  ++e   ++ +p+ d+e   ++  ++m+  +++  +v+++r++  +
  MMETSP1174-20130828|7356_1 363 IPVIADEYVDREFGTGALKITPAHDQNDYEIGKRHDL-EMINIMNKDGTINKAGGK-------YTGLDRYDAREQLWADMDTEGLVIKAEPHTQRVPRSQRGGEVIEPMVSTQWFVDTKDMAAQAVDAvkNKEITILPPRFEKMWYYWLESPRDWCVSRQLWWGHRIPVWFLKGS--DRDSTDVDFFVA---RSEA---------DAYEMAREKYGSDVELEQDDDVLDTWFSSGLWPFATLGWPEETADLTQFYPTTLLETGYDILFFWVARMVMMGINLTGKPPFEVIYMHGLVRSSDGTKMSKTKGNVIDPLDTIDTYGADALRYSLVTGvTPGQDIPLSMEKVEA-NRNFANKLWNSGRYLI--GKLQGIQAedpalweslavkePMGMEELMALPLAERYIVSRCHELATKVTAGLLAYNMADSGSLIYQFLWDEYADWYIEASKTKTDGEAAQVS----LKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTAdsTNEALMTATWPKLDDESDLSTDPEAMAHFTALQALVRSIRNARAE 879
                 568999*******************************.799999999955555444.......5666667777778888*************************99999*****************97225689*************************************9984..344444443332...2333.........33333334444446888999***********************9*******************************************************************************999988************975.666*************..99998886333333222211112233445567789***********************************************99887776655....59*****************************988889999*********99998888888888888888888888876443 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.3e-26   9.1e-24       2     233 ..     120     342 ..     119     347 .. 0.85
   2 !   18.2   0.0   1.5e-07   0.00011     272     317 ..     347     392 ..     342     407 .. 0.89
   3 !   86.7   0.0   3.1e-28   2.1e-25     386     818 ..     408     878 ..     403     908 .. 0.78

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.3e-26
   TIGR00395   2 eiekkyqkrWeeekifeadpd.drekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevhavPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiveyilikfkledgalylvaatlrPetvyGvtnvfvnPe 233
                 ++ek   k We    f+  p+ d+  + + ++ P + G lh+Gh++  +  +++arf+rm+ +  L+       Gt   g+a ++  + ++  +  ++ +++ +e +l+ a    + e     + +++++lG+s dW re  t ++  ++ ++  + +++e+Gl+ +G++ v+++p  + +v d ++   e+     y   k+ l  ++ y+++at rPet+ G  +v v+Pe
  MMETSP1174-20130828|7356_1 120 AVEKDLYKWWESSGHFKPKPNpDKKGYTIPMPPPNVTGKLHMGHAMFVALQDIMARFHRMRQRPTLWL-----PGTDHAGIATQMLVEKDLAAQGLSR-KEIGREAFLERA--WEYKEDKGGAIVEQMRRLGASADWSRERFTLEPDMSKAVREAFVRFHEQGLVFRGSRMVNWSPSLQTAVSDLEVEFSEEQGTLYYF--KYMLAGSDDYIPVATTRPETILGDSAVCVHPE 342
                 689999************99834555889999**********************************95.....5677778888888877777665543.566666665543..23334445568899************************************************************999998877665..666666666**********************7 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.5e-07
   TIGR00395 272 kqligkkvkaPvvgkevpiLPaefvdaekatGvvlsvPahaPadyi 317
                 +q+igk+v +P+ g+e+p++  e+vd e +tG +   Pah  +dy 
  MMETSP1174-20130828|7356_1 347 QQFIGKTVLVPSQGREIPVIADEYVDREFGTGALKITPAHDQNDYE 392
                 79******************************************95 PP

  == domain 3    score: 86.7 bits;  conditional E-value: 3.1e-28
   TIGR00395 386 kGvlienildykGikveeakekvkedlidkGladvyyefsekkv.icrcGdkCvvkvledqWflkysdeeWkekalkclekmrlipeevkeafeekidWlkdkavarrkGLGtrlPwdekyliesLsdstiyqayytiakllnkdelkaeqltdelf..dyifldkddvketkiplei.....l..eklreefeyfyPldlrisakdLipnhLtfyifthvaifPeefWPrgivvnGyv.llegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksd....................levgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkd..vdyyrrrsgenvkd........vlaevleaiikLlaPfaPhlaeelyeev.....GkegfvseakfPevseea...vdkevekaeeylrnlvrdikeiak 818
                  G++++   +y G+   +a+e++ +d+  +Gl     e+  ++v  ++ G++ +  ++  qWf++  d + +       +++ ++p+ + + + + ++  +d+ v+r+   G r+P    +l  s  dst    ++ +a+    +e++a ++  e +  d  + ++ddv +t  ++++     l   +   +++ fyP  l  ++ d++   +   +   + +  +  +   i ++G v + +g k+sk+kGn++   ++++ +Gad+ r  l++   + +d+ +  ++vea ++  ++l + ++    k++                    +e    l   +r+++sr +++  +v+  l  +++  +   +++++  d   d+y ++s+++++         vl  v+++ ++Ll P++P+++e l++++       +  +  a +P++++e     d e+ +    l++lvr+i++   
  MMETSP1174-20130828|7356_1 408 DGTINKAGGKYTGLDRYDAREQLWADMDTEGLVIK-AEPHTQRVpRSQRGGEVIEPMVSTQWFVDTKDMAAQAVDAVKNKEITILPPRFEKMWYYWLESPRDWCVSRQLWWGHRIPV--WFLKGSDRDSTDVD-FF-VAR----SEADAYEMAREKYgsDVELEQDDDVLDTWFSSGLwpfatLgwPEETADLTQFYPTTLLETGYDILFFWVARMVMMGINLTGKPPF-EVIYMHGLVrSSDGTKMSKTKGNVIDPLDTIDTYGADALRYSLVTGVTPGQDIPLSMEKVEANRNFANKLWNSGRYLIGKLQgiqaedpalweslavkepmgMEELMALPLAERYIVSRCHELATKVTAGLLAYNMADSG-SLIYQFLWDeyADWYIEASKTKTDGeaaqvslkVLVYVFDTCLRLLHPYMPYVTEILWQQLpktadSTNEALMTATWPKLDDESdlsTDPEAMAHFTALQALVRSIRNARA 878
                 689999999**********************9755.5664555426778****************999887666555567899*********************************6..47778999999654.33.343....34444456666553356677777786666655542211131124467999*************9766655555555555444333.56888888735689********************************************************999999998888888999***99977764322111123445699***************99999999998.7888887553379******999776899999999*************************98431111233466799***9987432267788888899*********9543 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.1e-18   2.8e-15       1     168 [.     116     299 ..     116     307 .. 0.80
   2 !    5.1   0.0    0.0016       1.1     229     268 ..     310     349 ..     301     356 .. 0.86
   3 !   30.1   0.0   4.2e-11   2.9e-08     302     362 ..     350     410 ..     344     443 .. 0.80
   4 !   12.1   0.3   1.2e-05    0.0082     412     434 ..     507     529 ..     452     550 .. 0.89
   5 !   38.1   0.0   1.7e-13   1.1e-10     603     775 ..     641     849 ..     632     862 .. 0.73

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 4.1e-18
   TIGR00396   1 ykleeieekwqqkwkekkvkkveedsekkkyYiLsmfP.YPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeni.................akmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevi 168
                 y+++++e+ + + w++   +k + + +k k Y + m P    g+lH+GH    ++ D+++R++r++    l   G D  G+ a ++ +e++ a +   ++ i                   + +q++ lg+s dw+re  t +p+  k     F+ ++e+gL+++   +vnw p+++t + + ev 
  MMETSP1174-20130828|7356_1 116 YDFNAVEKDLYKWWESSGHFKPKPNPDK-KGYTIPMPPpNVTGKLHMGHAMFVALQDIMARFHRMRQRPTLWLPGTDHAGI-ATQMLVEKDLAAQGLSRKEIgreafleraweykedkgGAIVEQMRRLGASADWSRERFTLEPDMSKAVREAFVRFHEQGLVFRGSRMVNWSPSLQTAVSDLEVE 299
                 68999******************99999.778888764156788************************************9.556666666666555555552221121111111111145779******************************************************99988885 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0016
   TIGR00396 229 leFkiedekekiavfttrpdtlfgvtylalaaehplvkkv 268
                 +++ ++++++ i v ttrp+t+ g + + + +e+p  ++ 
  MMETSP1174-20130828|7356_1 310 FKYMLAGSDDYIPVATTRPETILGDSAVCVHPEDPRYQQF 349
                 6788999**********************99999876665 PP

  == domain 3    score: 30.1 bits;  conditional E-value: 4.2e-11
   TIGR00396 302 tglkainPltkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikkaek 362
                  g + + P  + +iP+ + +yv  e+Gtga+   pahd++D+e  k++ l+++++++k+++
  MMETSP1174-20130828|7356_1 350 IGKTVLVPSQGREIPVIADEYVDREFGTGALKITPAHDQNDYEIGKRHDLEMINIMNKDGT 410
                 566778899*********************************************9996632 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 1.2e-05
   TIGR00396 412 rDWlvsRqRYWGePiPiihledg 434
                 rDW vsRq +WG  iP+ +l+ +
  MMETSP1174-20130828|7356_1 507 RDWCVSRQLWWGHRIPVWFLKGS 529
                 9****************998854 PP

  == domain 5    score: 38.1 bits;  conditional E-value: 1.7e-13
   TIGR00396 603 lekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekea.................ktelkeealeeaekelrrevhkalkkvtedlekke.......slntviselmkllnallkakk.......e.elllealkalvtvlspiaPhlaeelaeklgeeeseikq....akwpkvde 775
                  +kmsk k+n+idP + ++ yGaDalR  ++    + +++  + +++e  + f ++++n     +++ ++                   + +  al  ae+ + ++ h+   kvt  l   +        +  +  e+     + +k+k+       + ++l+  + + +++l+p++P+++e l+++l ++ +++++    a+wpk+d+
  MMETSP1174-20130828|7356_1 641 GTKMSKTKGNVIDPLDTIDTYGADALRYSLVTGVTPGQDIPLSMEKVEANRNFANKLWNSGRYLIGKLQGiqaedpalweslavkepMGMEELMALPLAERYIVSRCHELATKVTAGLLAYNmadsgslIYQFLWDEYADWYIEASKTKTdgeaaqvSlKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTADSTNEalmtATWPKLDD 849
                 58*************************9988888999**********************988888887777777888898888754434445566677888888888888888887654443121221112223333333444444444488887765578888899999*****************9876655544111156777765 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.3e-09     5e-06       8      55 ..     153     200 ..     146     209 .. 0.88
   2 !   14.8   0.0   2.8e-06    0.0019     153     241 ..     437     522 ..     423     526 .. 0.86
   3 !   45.2   0.0   1.7e-15   1.2e-12     312     509 ..     627     836 ..     603     851 .. 0.66

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7.3e-09
   TIGR00398   8 yYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielk 55 
                 + + gk+H+Gh++ + l D++ar++r+r   +l++ gtD  G ++++ 
  MMETSP1174-20130828|7356_1 153 PNVTGKLHMGHAMFVALQDIMARFHRMRQRPTLWLPGTDHAGIATQML 200
                 55779*************************************999875 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.8e-06
   TIGR00398 153 ekcgrllePlelieprcvvskakpelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvP 241
                 e +    eP +   pr+   ++  e   ++++F++++++  + ++ +k+++    l+ + +++   +l++  +d++++R+l  wG ++P
  MMETSP1174-20130828|7356_1 437 EGLVIKAEPHTQRVPRSQRGGEVIEPMVSTQWFVDTKDMAAQAVDAVKNKE-ITILPPRFEKMWYYWLES-PRDWCVSRQLW-WGHRIP 522
                 5566677888999999999999999999********************655.55555788899999***9.9**********.*****9 PP

  == domain 3    score: 45.2 bits;  conditional E-value: 1.7e-15
   TIGR00398 312 pkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkea...see.dekllkkieealekidealekfefkk.aleeilklvsegnk....lideekPwelakee.....ekekellavllelirvlsillkpilpklsekilkllnleleadk 509
                 ++ +  hg +    g kmSk kgnv+dp d ++ ygad+lRY l+  v  ++D+ +s+e+  +  N + +nkl N    ++g  + +  +  +  +     ++   e+l++    a+  i + ++++  k  a     ++++ g+     l de ++w ++  +     e+++  l+vl++++ ++  ll+p++p ++e + ++l  ++++++
  MMETSP1174-20130828|7356_1 627 FEVIYMHGLVRSSdGTKMSKTKGNVIDPLDTIDTYGADALRYSLVTGVTPGQDIPLSMEKVEA--NRNFANKLWNSGRYLIGKLQGIQAEDPALWESLavkEPMgMEELMAL-PLAERYIVSRCHELATKVtAGLLAYNMADSGSLiyqfLWDEYADWYIEASKtktdgEAAQVSLKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTADSTN 836
                 56678899997655*********************************************9876..55788888886555555444333332222222233333303344433.33344444444444443303334456666665411113467788887765531222223333455666999**************999999988887554 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.58     4e+02      31      53 ..     155     177 ..     150     181 .. 0.83
   2 !   16.9   0.0   8.5e-07   0.00058     251     330 ..     629     709 ..     601     764 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.58
   TIGR00435  31 vYdasHlGhaRtlvvfDvlrril 53 
                 v  ++H+Gha  +   D+++r  
  MMETSP1174-20130828|7356_1 155 VTGKLHMGHAMFVALQDIMARFH 177
                 66789******9999***99975 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 8.5e-07
   TIGR00435 251 kyflHngflkiegeKmSKSlgNfitikdllkkfdpralRlllls.vhyrnqldfseelleeaknalerlakalralkedla 330
                  +++H      +g KmSK  gN+i   d ++++ + alR+ l++ v   + + +s e++e+ +n  ++l +  r+l  +l+
  MMETSP1174-20130828|7356_1 629 VIYMHGLVRSSDGTKMSKTKGNVIDPLDTIDTYGADALRYSLVTgVTPGQDIPLSMEKVEANRNFANKLWNSGRYLIGKLQ 709
                 46999999999*****************************98872566788999999999999999999888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1023 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.09u 0.19s 00:00:01.28 Elapsed: 00:00:00.95
# Mc/sec: 1421.31
//
Query:       MMETSP1174-20130828|7363_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|7365_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   23.8   0.0    6.1e-06   23.6   0.0    1.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.5e-09   6.1e-06     111     158 ..      45      92 ..      17     103 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.5e-09
   TIGR03162 111 vpgGEsvadfsqRveefleelakeekenvlivtHgGvirallahllgl 158
                 +  GE  + f +R+++++  l +++++++++v+H Gvi a+  + l++
  MMETSP1174-20130828|7365_1  45 ICPGEPTRVFNNRMKALMMLLRSRDERTIAVVAHWGVIHAISGQSLEN 92 
                 4459***************99999****************98877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 601.87
//
Query:       MMETSP1174-20130828|7364_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|7361_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-157  522.6   0.0   3.7e-157  522.2   0.0    1.1  1  TIGR00440 glnS: glutamine--tRNA ligase
      7e-82  273.5   0.7      2e-79  265.4   0.5    2.3  1  TIGR00463 gltX_arch: glutamine--tRNA ligase
    3.2e-15   53.8   0.1    3.2e-15   53.8   0.0    2.1  4  TIGR00464 gltX_bact: glutamate--tRNA ligase
    6.3e-06   23.6   0.0    1.1e-05   22.8   0.0    1.4  1  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase


Domain annotation for each model (and alignments):
>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.2   0.0  3.6e-160  3.7e-157       1     524 []      51     602 ..      51     602 .. 0.91

  Alignments for each domain:
  == domain 1    score: 522.2 bits;  conditional E-value: 3.6e-160
   TIGR00440   1 vrtrfppepnGylhiGhaksillnfGlakeykG......tcnlrfddtnpvkedveyvesikrdvewlGfkwegkvryssdyfdelyalavelikkGlayvdeltaeeireyrGil.ed.....pG............kaskyrdrsieenlalfekmrdGkfkeGkailrakidlaspfivmrdlvlyrikfaehhrtGdkwriypmydfthclsdalenithslctlefqdnrrlydwvldnisievrpaqyefsrlnlegtvlskrklaklvddkfveGwddprlptlsalrrrGvtpasirefikrlGvtkqdnvievaalesairedleenapramavldpvkvvienledeae..lvtipnrpnkpelGerqvpftkelyidradfreeadkeykrlvlgkevrlrnay.vikaervekdaeGkiitifvtydaevlskepadgrkvkgviqwvsisskypaeirlydrlfkvenpgaeddflsvinpes.lvikegvveqsladavaek.........afqfereGyftldskestaekvvlnrivslkdatsk 524
                 vrtrfppepnGylhiGhaks+ +nf la +  G      +  +r+ddtnp+ e  ey++sik+dv w+G+k+  + +y+sdyfd+ly+la+ li +G  yv+   +e+i + r    ++      G              s++rd  +  n++ f++m++Gk++eG+ +lr+k+d++s  + m d v+yrikf+ h++ G+kw iyp+ydfthc+ d+le++  s+ctlef+  r++y w+l+++ ++ +p  ye srln+e+ +lskrkl+kl++ kf +Gwddpr+pt+++lrrrG+t++++ +f+ ++Gvt+++n ie++ l+   r++++ +a r+mavl+p+kvv+ n ++e+    + +p  p+k +  + +v +t  lyid adfre   k+y+ l +gk + l+ a   i  ++v    e     + +t  a vl   p dg++++g +qwv+ s+ ++ e rlyd+lfkv++p+  +d + ++n es +++  + +++s+  ++ +          +fqfer G f++d   s  + +v+nr+  lk++ +k
  MMETSP1174-20130828|7361_1  51 VRTRFPPEPNGYLHIGHAKSMNMNFSLAFDKLGvepsrrETLFRYDDTNPEAECAEYIDSIKEDVAWMGWKP-VRTTYASDYFDKLYELAERLITEGHCYVCFQKSEDIEQCREAArTQaqarsKGlsdkdaewpsgnPFSPWRDMEVAVNMERFRDMKKGKYDEGECCLRMKMDMTSSNLNMFDQVAYRIKFCAHPHVGEKWVIYPTYDFTHCVQDSLERVDFSICTLEFESRRESYYWLLHHLGMF-KPMVYEMSRLNIEYMLLSKRKLLKLIETKFFHGWDDPRMPTIKGLRRRGYTAGTLNKFCDTIGVTRNENLIEYSFLQEIFRQEVDASARRVMAVLEPIKVVLTNPDHETVgkPLQVPDFPQKVDSSQHTVALTPTLYIDGADFREVDSKDYFGLAPGKWIGLKYANlCICCDEVRVSPETGEKELICT--AAVL---PPDGKRPQGCVQWVP-SNGLKLEARLYDHLFKVPQPSD-EDWEAQLNHESeVILSGARIDPSILLTEGGGgqelpstgtHFQFERIGIFVVDPDTSPEKGLVMNRTAPLKESKAK 602
                 89**************************998873333224679*****************************.9********************************99998886431333344433666666666555569***********************************************************************************************************.********************************************************************************************************99987544799******************************999************9998862688999988766666677776..5788...99************9.68899***************95.789********77777788999987777666779999999*************88888888***********9876 PP

>> TIGR00463  gltX_arch: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.4   0.5     2e-82     2e-79      82     458 ..      41     445 ..      14     452 .. 0.81

  Alignments for each domain:
  == domain 1    score: 265.4 bits;  conditional E-value: 2e-82
   TIGR00463  82 klieLedakkgevvlrfaPnPsGplhiGharaailnqefakkYeG......klilrldDtdPrrekeeaydsileDldlLGvkvDevvyqsdrielyYdYarkliedGkaYvcdcsteefrelrn..........kGva............ckrrdrsveenLevweemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGdkykvYPlldfsvaidDhllGvthvlrgkdyidnerkqeYiy..kylglelpevkhygrlkiedvraLstsskkkgikegeysGWDDprlptlralrrrGikpeairelllslGvkeadvklswkklyalnkkiidkearryffivnPvkleieglp.ekkle..ekPlhpdkpevGerklilekeiyvdkDdlevled 458
                 +++ L++     v +rf+P+P+G+lhiGha+++ +n   a    G        + r dDt+P+ e  e  dsi+eD+ ++G k+ +++y+sd+++++Y+ a++li +G+ Yvc+ ++e++ + r+          kG +            ++ rd+ v  n+e+++ m++g+++e++ ++r+k+D+   n  + D v++ri+   hp +G+k+++YP++df+  ++D l+ v   + + ++    r++ Y +  ++lg+  p v    rl ie +  Ls ++ +k i+ + + GWDDpr+pt+++lrrrG +  +++++   +Gv +++  +++  l  + ++ +d +arr +++++P+k+ + + + e + +  + P  p+k +  ++ + l+ ++y+d+ d+  ++ 
  MMETSP1174-20130828|7361_1  41 EEQKLNNGA--IVRTRFPPEPNGYLHIGHAKSMNMNFSLAFDKLGvepsrrETLFRYDDTNPEAECAEYIDSIKEDVAWMGWKPVRTTYASDYFDKLYELAERLITEGHCYVCFQKSEDIEQCREaartqaqarsKGLSdkdaewpsgnpfSPWRDMEVAVNMERFRDMKKGKYDEGECCLRMKMDMTSSNLNMFDQVAYRIKFCAHPHVGEKWVIYPTYDFTHCVQDSLERVDFSICTLEFES--RRESYYWllHHLGMFKPMVYEMSRLNIEYM-LLSKRKLLKLIETKFFHGWDDPRMPTIKGLRRRGYTAGTLNKFCDTIGVTRNENLIEYSFLQEIFRQEVDASARRVMAVLEPIKVVLTNPDhETVGKplQVPDFPQKVDSSQHTVALTPTLYIDGADFREVDS 445
                 444444443..4669*****************98887666444343333326899*************************************************************998876554111111111144322222233333345689999************************************************************************************99..666666612566777777777777777777.667777789999999**********************************************************************99994423332211446667788888999************9987754 PP

>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   3.1e-18   3.2e-15       2     116 ..      51     170 ..      50     182 .. 0.89
   2 ?   -1.9   0.0      0.25   2.6e+02     137     197 ..     212     270 ..     197     324 .. 0.73
   3 ?   -3.9   0.0         1     1e+03     250     281 ..     338     367 ..     335     381 .. 0.71
   4 ?   -3.3   0.4      0.65   6.6e+02     354     395 ..     590     631 ..     587     637 .. 0.69

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 3.1e-18
   TIGR00464   2 vrvRfAPSPTGylHiGglRtAlfnyllAkntng......eFllRiEDTDkeRnieeaeeeileilkwlgiewdegpylQskrldiykklikeLleegkAYrCycskEeLeklreeqkakke 116
                 vr+Rf P P GylHiG +++   n+ lA ++ g      e l R +DT  e + +e++++i e + w+g +      + s+ +d   +l+++L+ eg+ Y C+  +E +e+ re++ ++ +
  MMETSP1174-20130828|7361_1  51 VRTRFPPEPNGYLHIGHAKSMNMNFSLAFDKLGvepsrrETLFRYDDTNPEAECAEYIDSIKEDVAWMGWKPV-RTTYASDYFDKLYELAERLITEGHCYVCFQKSEDIEQCREAARTQAQ 170
                 8************************9997765433333389****************************9998.5667899999999***************************9877665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.25
   TIGR00464 137 akgekpvvRlkipeea.evsfnDlvrgeiklenseld..dlvilksdglptYnlavvvDDllmk 197
                  ++ ++ +R+k++  + ++   D+v  +ik+  +       vi      ptY+++  v D l +
  MMETSP1174-20130828|7361_1 212 YDEGECCLRMKMDMTSsNLNMFDQVAYRIKFCAHPHVgeKWVI-----YPTYDFTHCVQDSLER 270
                 4556777888877544146667888888887654332224444.....6999999999998755 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 1
   TIGR00464 250 sieqfkeqGyLpeAliNylallGwspddkkEv 281
                 +i+ ++++Gy    l  ++ ++G + ++   +
  MMETSP1174-20130828|7361_1 338 TIKGLRRRGYTAGTLNKFCDTIGVTRNE--NL 367
                 5888999999999999999999998874..23 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 0.65
   TIGR00464 354 kerlktlkelaeeiklffedkkevdedakkklekkevkevle 395
                  +r + lke + ++k+ +++ k+  e +k+++ k++ +++le
  MMETSP1174-20130828|7361_1 590 MNRTAPLKESKAKLKVALQNSKSAAELEKEEKRKEHQRKALE 631
                 566777788888888888888877777777766666666665 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-08   1.1e-05       2     116 ..      52     175 ..      51     217 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-08
   TIGR03838   2 vGRfAPsPtGpLHlGslvaalasyldara......aggkwlvRieDlDtpRevpgaaeeilatLealglewDeevvyQserkelYqaalerlkaaglaYpCactRkeiaaa....ereeelvypg 116
                 + Rf P P G LH+G + +    +  a        ++++ l R +D  ++ e +++ ++i ++++++g ++  +       ++lY+   erl ++g++Y C    ++i++     +++ ++  +g
  MMETSP1174-20130828|7361_1  52 RTRFPPEPNGYLHIGHAKSMNMNFSLAFDklgvepSRRETLFRYDDTNPEAECAEYIDSIKEDVAWMGWKPVRTTYASDYFDKLYE-LAERLITEGHCYVCFQKSEDIEQCreaaRTQAQARSKG 175
                 78**************99988888666553444448899******************************99887776666666665.669*******************9943332222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1954.56
//
Query:       MMETSP1174-20130828|7368_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-17   59.5   0.1    1.1e-16   59.1   0.0    1.2  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.6e-20   1.1e-16       3      97 ..      11     111 ..       9     122 .. 0.69

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 2.6e-20
   TIGR03330   3 lGkhllvdlygv....deekledeelieevllea.akaa..gatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvdpekavellke 97 
                  G h+++d++g     +e  l+ +e+i+e++ ea +++   ++ ++      +sp G+++ v++ ESH++ H + Ekg+ avDvftCg+++    a + +++
  MMETSP1174-20130828|7368_1  11 HGSHIMLDFTGFfceaSEGALKTMEVIRESVREAgVREVhhKTVVLGGDGDALSPPGFTACVLIDESHVTAHCYSEKGWLAVDVFTCGSHSTEDLARA-IQN 111
                 699*****9875111144456667777766666533332112334445567899***********************************766554444.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1174-20130828|7366_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1104.94
//
Query:       MMETSP1174-20130828|7367_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2089.83
//
Query:       MMETSP1174-20130828|7373_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-137  455.3   7.2   2.1e-137  455.1   5.0    1.0  1  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit
    8.8e-20   68.6   0.3    1.1e-19   68.2   0.2    1.1  1  TIGR02717 AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain


Domain annotation for each model (and alignments):
>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.1   5.0    1e-140  2.1e-137       2     284 ..      15     300 ..      14     302 .. 0.97

  Alignments for each domain:
  == domain 1    score: 455.1 bits;  conditional E-value: 1e-140
   TIGR01019   2 lldkdtkvivqGitGkqgsfhteqmleyGtkivgGvtpgkgGtevlglpvfdsvkeaveetganasvifvPapfakdaileaidaeielivvitegiPvkdtlkvaelleea.ktkliGPncPGiisPgeckiGimPaeilkkGkvGivsrsGtltyeavaqlteaglGqstcvGiGGdpvnGtsfidvleafeeddeteaivliGeiGGsaeeeaaefiken..vskPvvafiaGltaPkgkrmGhaGaiisggkGtaeskiealeaaGvkvvkslaeiaelvae 284
                  +dk+tkvi+qG+tGkqg+fh+eq+++yGtk+vgGvtp+kgGte+lglpvf+svkea +++  +asvi+vP+pf++ ai++ai++ei l+v iteg+P +d++kv++ l+++  t+liGPncPGii+PgeckiGimP++i+++Gk+G+vsrsGtltyeavaq+t+ glGqstcvGiGGdp nGt+fid+le+f +d++te i++iGeiGGsaeeeaae++k++   +kPvv+fiaG+taP+g+rmGhaGai+sggkGta++k eale+aG++v++s+a++++++ +
  MMETSP1174-20130828|7373_1  15 WVDKHTKVICQGFTGKQGTFHSEQAIAYGTKMVGGVTPKKGGTEHLGLPVFNSVKEACDAVKPDASVIYVPPPFCASAIIDAIKNEIPLVVAITEGLPQHDMVKVKWHLNQQsVTRLIGPNCPGIIKPGECKIGIMPGYIHQPGKIGVVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPQTEGIIMIGEIGGSAEEEAAEWLKAHgdPNKPVVGFIAGMTAPPGRRMGHAGAIVSGGKGTAAAKFEALEDAGIYVSRSPAQLGQTMIK 300
                 589******************************************************************************************************98876553899*********************************************************************************************************986679******************************************************99976 PP

>> TIGR02717  AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.2   5.6e-23   1.1e-19      42     273 ..      50     287 ..      35     302 .. 0.79

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 5.6e-23
   TIGR02717  42 vnpkae..eilgvkaYksvkeipeev..dlavivvpaklvlevveecgekgvkgvvvitaGFkEvGeeGaelekklveiakkygvrllGPNvlGiinteiklnatfaktapkkGeialisQSGalllalldwaekekvGlsklvslGnk..adidesdlleylaeDeetkvillYlEgikdg.kkFlktak.eiskkkPivvlksGksea.GakaaasHTGala....gsdevyeaalkqaGvir 273
                 v pk++  e lg+++++svke  + v  d  vi vp  ++ +++ ++ + ++  vv it G        ++++ +   + +++  rl+GPN+ Gii++       +  +  ++G+i+++s SG l+   + ++++ ++G s+ v++G      +++ d le +++D++t+ i++  E    + ++  + +k +   +kP+v + +G++   G+   + H Ga++    g+ ++  +al+ aG+ +
  MMETSP1174-20130828|7373_1  50 VTPKKGgtEHLGLPVFNSVKEACDAVkpDASVIYVPPPFCASAIIDAIKNEIPLVVAITEGLPQHDM--VKVKWH---LNQQSVTRLIGPNCPGIIKPGECKIGIMPGYIHQPGKIGVVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDpfNGTNFIDCLERFTNDPQTEGIIMIGEIGGSAeEEAAEWLKaHGDPNKPVVGFIAGMTAPpGR--RMGHAGAIVsggkGTAAAKFEALEDAGIYV 287
                 55665444779***********8866559********************************998665..555555...5677889*************988999999999*************************************8733468999*************999987733222023333333033457*********9875154..479999998222223344445677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1042.38
//
Query:       MMETSP1174-20130828|7374_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2313.48
//
Query:       MMETSP1174-20130828|7379_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|7380_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|7382_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 859.93
//
Query:       MMETSP1174-20130828|7385_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-15   54.3   0.1    4.1e-15   53.4   0.1    1.4  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain
    2.7e-12   44.3   0.0      5e-12   43.4   0.0    1.4  1  TIGR00340 zpr1_rel: zinc finger protein ZPR1 homolog
  ------ inclusion threshold ------
      0.051   11.5   1.9       0.11   10.4   0.0    2.4  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1     3e-18   4.1e-15       2     185 ..     218     421 ..     217     428 .. 0.68

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 3e-18
   TIGR00310   2 dCPsCgreleavvktvn.diPyFgevletsliCekCgyrsadvvvleekepk........ryilkidaeadLnkrvvksesatiriPelgleiepGpasegfitnleGvlerveevlkta.lrlq....sedeekkk....kaeelle.rlkevie..GkekltvileDPlgqslivseeal..keklseeeieklktgiviieseg 185
                 +C +C++    ++   +  iP+Fg   + + +C++Cgy+ + + ++ ++e +         + + +++ +dL+++ v s++a++ iP l+ e++     +g++t++eG+++ +   l+   +  +    s+   ++      ++e+le +   +ie   +e + v++ DPlg s+i +e      ++ ++ e+e+ + gi+   + g
  MMETSP1174-20130828|7385_1 218 PCSACSEPAAGKLCFFElTIPHFGASELIAFSCQECGYKYNKMRTGVANEKEsspeprgkTLRVMVQHPSDLSRHAVISDTASVSIPALEAELQSS---QGRFTTVEGLVRGIVSGLRHVsIAGDtaarSDHTRQVStngsTMVEVLEqKAATLIEncAREPFEVVVTDPLGTSFISGEGSNliCDEYDRTEAENEELGIITRRQVG 421
                 7999999888888888889**********************998875443322355655445567788889**********************976...***********998888875414433443322222222111123333331333445522357799************9876531145555567776666666555555 PP

>> TIGR00340  zpr1_rel: zinc finger protein ZPR1 homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.7e-15     5e-12       1     156 [.     219     393 ..     219     397 .. 0.67

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.7e-15
   TIGR00340   1 CPvCgg.rtlkavtyvediPyfGkvllstliCekCgyrsadvv..vleek....ePk..ryeikieneedLktrvvrsksatiripelgikiepgpasegfisnieGvlerveeklktal...dleeed........ekvkkveeilkkieevie.Gkkk.ltliieDefGksliese 156
                 C +C      k+  +   iP+fG   l +++C++Cgy+   +   v +ek    eP+   + + ++++ dL+ + v s +a + ip l++++++   s+g  +++eG++  +   l+ ++   d+            +    ve + +k    ie   ++ + ++++D+ G s+i +e
  MMETSP1174-20130828|7385_1 219 CSACSEpAAGKLCFFELTIPHFGASELIAFSCQECGYKYNKMRtgVANEKesspEPRgkTLRVMVQHPSDLSRHAVISDTASVSIPALEAELQS---SQGRFTTVEGLVRGIVSGLRHVSiagDTAARSdhtrqvstNGSTMVEVLEQKAATLIEnCAREpFEVVVTDPLGTSFISGE 393
                 566666555677778889*******************9765431133444122245522566678999***********************976...89*********99988776655411133333212322221112223333334444444144446**************987 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.5      0.45   6.1e+02      17      39 ..     208     229 ..     203     232 .. 0.71
   2 ?   10.4   0.0   8.1e-05      0.11       5      42 ..     247     284 ..     245     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.45
   TIGR02605  17 vlqkmsddplasCPeCgseeler 39 
                 +++k+++   + C +C++ ++ +
  MMETSP1174-20130828|7385_1 208 AVRKVAE-VVVPCSACSEPAAGK 229
                 5677777.788899998866655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 8.1e-05
   TIGR02605   5 eYrCtaCghefevlqkmsddplasCPeCgseelerlls 42 
                  ++C++Cg + +++++   +++ s Pe ++++l+ +++
  MMETSP1174-20130828|7385_1 247 AFSCQECGYKYNKMRTGVANEKESSPEPRGKTLRVMVQ 284
                 599**************999999999999977777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.50
# Mc/sec: 1372.69
//
Query:       MMETSP1174-20130828|7391_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-46  155.2   0.0    3.5e-46  154.9   0.0    1.1  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
      6e-15   53.6   0.0    8.6e-15   53.1   0.0    1.3  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   1.7e-49   3.5e-46       1     168 []      71     253 ..      71     253 .. 0.86

  Alignments for each domain:
  == domain 1    score: 154.9 bits;  conditional E-value: 1.7e-49
   TIGR02251   1 kktlvLDLDeTLvhsslkkak......aieadlklevliek...kiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvet...ngkyvKdlslvkkdl..skvviiDnsplsyslq.peNaipiksfis.denDeeLlklipflealrkeddvrsll 168
                 k tlvLDLDeTLvh+ ++ ++      +i++ + l+v i++   ++  v+V kRPy+d F++++sk+ e+v++Ta+l+ Ya++++d ld  ++v+++rlyR+ c  +    g+y+Kdl+l++     ++ +iiDnsp++y++  p+Na+piksf+  +++D+eLl l+pfl al + +dvrs+l
  MMETSP1174-20130828|7391_1  71 KLTLVLDLDETLVHTATNPTDpvlmhgGIHYPFDLRVDIRRdtaQHKSVFVWKRPYLDLFMSEVSKYCEVVIYTAGLKRYASPIIDLLD-LNGVVKKRLYRDACGPRldpLGSYTKDLRLASGTAfpERALIIDNSPSAYKMTcPDNAVPIKSFFGnNPDDDELLCLLPFLSALCEVQDVRSIL 253
                 579************6666666667776777776666666655677889****************************************.888***********765222678******9988543479***********76439**********97899*********************986 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.2e-18   8.6e-15       3     143 ..      68     211 ..      66     224 .. 0.72

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 4.2e-18
   TIGR02250   3 rekkLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPe....kklFgdrilsrdestsaktKsLkkllp.adesavviiDdredvWkk 143
                 r++kL+LvlDlD+tl+ht+++++    ++  ++ +  + + d+++ + ++   ++v  RP+++ f+++vsk  e+ +yt g ++Ya+ i++llD +    k+l+ d    r +     tK L+   + a  +  +iiD++ + +k+
  MMETSP1174-20130828|7391_1  68 RRRKLTLVLDLDETLVHTATNPTDPVLMHGGIHYPF-DLRVDIRRDTAQH-KSVFVWKRPYLDLFMSEVSKYCEVVIYTAGLKRYASPIIDLLDLNgvvkKRLYRDACGPRLDPLGSYTKDLRLASGtAFPERALIIDNSPSAYKM 211
                 78******************9998888885555554.4556777766664.6899999************************************7611114556666666666667777775544331233556677777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1247.51
//
Query:       MMETSP1174-20130828|7389_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1175.33
//
Query:       MMETSP1174-20130828|7392_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1447.33
//
Query:       MMETSP1174-20130828|7386_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-32  111.7   5.9    2.6e-32  110.4   4.1    1.6  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
     0.0039   14.5   8.9       0.12    9.6   0.7    2.4  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   4.1   1.3e-35   2.6e-32       1     296 [.      20     341 ..      20     349 .. 0.80

  Alignments for each domain:
  == domain 1    score: 110.4 bits;  conditional E-value: 1.3e-35
   TIGR00817   1 lqtgllfllwyvlnvyFnivnkkll.....klfhypvlktlvslavgvllellswssilk...........kr..lkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva........lasltelsfnllgflsamisniefvarnifsKkiltkksldkl.....nlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvka 296
                 l ++l+f+ wy+ n y+ni+nk  l     k+  y++++++++lav ++++l  w  +++           k+  + +s++ +  +  va++ +  h +s  +l++ +v f  ++k+ ep+f +v++ +f g+   l   l L  iv+Gv              +l f +++++   i+n    ++    Kk++   +l +      n +a+  il++f+++pi f +eg k+ +  f++   +   l++  ++++  l +f  y+ +a++++++  +lt sv+N+ KRv+vIv  ++ +++++s+ + +G+++a+aGv lYs +  
  MMETSP1174-20130828|7386_1  20 LSLVLYFAFWYLGNYYYNIYNKTALnetggKTAGYAMTVSTMQLAVCTVYALTLWLIRINpitilgllapsKQspPDLSASDIPKMGVVAFCSAGAHSASVFALNAGSVTFGQIVKSGEPVFAAVVNTIFYGKPPSLLKTLCLPIIVGGVGfacmkpdpVSGAYSLDFDIAALTAGCIANGMAAFKGSENKKLMSGGDLGSRlggvgNQFAVTEILAFFISLPIMFYMEGDKFGE--FVKLFQSNQKLQF--NLVMSGL-TFYWYNELATMTIKKTGALTSSVANTAKRVIVIVGVAVAMKKPLSYEEKVGAAVAVAGVLLYSVIDD 341
                 5789*****************66661333346789****************9997665541111111111122112223333344445777888899***********************************8888777889999999999888888887788899*****************************9966542222247889999******************976..7776333333333..3555555.9**************************************************************9875 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   1.1    0.0001      0.21      42     151 ..      98     213 ..      53     220 .. 0.74
   2 !    9.6   0.7   5.7e-05      0.12      40     117 ..     257     336 ..     223     342 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0001
   TIGR00950  42 slkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg.......nlsislaGlllgllsgisfAlgtvlakrlv 151
                 s  ++ ++ ++++ ++g+  +  ++a +  +v +  ++ +  P+++++   ++  + ++ +k l + + + G+    ++        +l+++ a+l +g +++  +A+     k+l+
  MMETSP1174-20130828|7386_1  98 SASDIPKMGVVAFCSAGAH-SASVFALNAGSVTFGQIVKSGEPVFAAVVNTIFYGKPPSLLKTLCLPIIVGGVGFACMKPdpvsgaySLDFDIAALTAGCIANGMAAFKGSENKKLM 213
                 4455555555655555555.555679999*************************999999988877666666666666555588889999*****************9998888887 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 5.7e-05
   TIGR00950  40 r..nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivll 117
                 +  +s ++l++ l+++ l +  ++ l ++++kk+ + +  ++     ++v++   +  k+ ++  + ++a++a+aG+ l+
  MMETSP1174-20130828|7386_1 257 KlfQSNQKLQFNLVMSGLTFYWYNELATMTIKKTGALTSSVANTAKRVIVIVGVAVAMKKPLSYEEKVGAAVAVAGVLLY 336
                 15588999*******************************9*999999998887766667*****************5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1399.88
//
Query:       MMETSP1174-20130828|7393_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-46  153.4   0.1    1.1e-45  153.1   0.1    1.1  1  TIGR01752 flav_long: flavodoxin
    1.9e-14   52.2   0.1    3.1e-14   51.5   0.1    1.4  1  TIGR01753 flav_short: flavodoxin
    7.2e-07   27.0   0.0    1.1e-06   26.4   0.0    1.3  1  TIGR01754 flav_RNR: putative ribonucleotide reductase-associated flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.1   7.8e-49   1.1e-45       1     164 [.      47     211 ..      47     213 .. 0.94

  Alignments for each domain:
  == domain 1    score: 153.1 bits;  conditional E-value: 7.8e-49
   TIGR01752   1 kigifygsdtgntekiaekiekelgesavdvvnikkasaeeleaydvlilgtptwgaGelq.......edWeeilskleeldlkgktvalfGlGdqegysetfvdalgiladklkarGakvvGewptdgyefeaskavaegdkFvGLalDednqedlteeRiekWveqikk 164
                 ++gi++++ +gnte+ia  i +++g   v+  +i++ sa+ ++a dv+ +g+ptw++G          + W   +++l ++d+kgktvalfG+Gd+ gys +f+d+lg l+d +++rGa++ G+w+ + y + +skav+++ kFvGL+ De+nq dl+eeR+++W++q+k 
  MMETSP1174-20130828|7393_1  47 NVGIYFSTMSGNTERIAGFIGEAIG---VEPKEIDECSADAISALDVVFVGAPTWNTGADTersgtsmDTW--LYDTLPKVDMKGKTVALFGCGDSVGYSGNFCDSLGELHDCFTERGATIKGSWSLEDYMHYESKAVRDD-KFVGLVCDEQNQMDLSEERVTTWISQLKG 211
                 59***********************...689***************************7765666544445..5699************************************************************9999.**************************996 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.1   2.2e-17   3.1e-14       3     115 ..      50     164 ..      48     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.2e-17
   TIGR01753   3 ivYaSmtGnteeiAeiieeglkeagaevdllevadvdkedlleyDavllGcstwgde.dle.eddflp..fveeleeidlegkkvalfGsgdtay...efceavdkleerlkeaGakiia 115
                 i +++m+Gnte iA +i e +    +     e+ + +++ +   D+v +G++tw+ + d e +   ++  +++ l ++d++gk+valfG+gd+ +   +fc+ + +l++ + e Ga+i +
  MMETSP1174-20130828|7393_1  50 IYFSTMSGNTERIAGFIGEAIGVEPK-----EIDECSADAISALDVVFVGAPTWNTGaDTErSGTSMDtwLYDTLPKVDMKGKTVALFGCGDSVGysgNFCDSLGELHDCFTERGATIKG 164
                 77899**************9875555.....5555665555589**********9983455433333345899*******************8654779******************965 PP

>> TIGR01754  flav_RNR: putative ribonucleotide reductase-associated flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   8.3e-10   1.1e-06       6     117 ..      51     162 ..      47     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 8.3e-10
   TIGR01754   6 ayaslsGntkevariireileeeGhevdvetrvstlaeaaldpedydlvllGtftveaGr....tpdevkdfiaelae....kpknvaifGtGetqfGddlycgavdrlakffgssypvl 117
                  + ++sGnt+ +a  i e +  e +e+d   + s+ a  a      d+v++G+ t+++G+    + + +  ++++ +     k k+va+fG G++   +  +c+++  l + f+ +  ++
  MMETSP1174-20130828|7393_1  51 YFSTMSGNTERIAGFIGEAIGVEPKEID---ECSADAISA-----LDVVFVGAPTWNTGAdterSGTSMDTWLYDTLPkvdmKGKTVALFGCGDSVGYSGNFCDSLGELHDCFTERGATI 162
                 5789***********************9...444223344.....569********999622214456777776644334449***********9766999********99998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 983.09
//
Query:       MMETSP1174-20130828|7397_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 236.48
//
Query:       MMETSP1174-20130828|7396_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|7394_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.48
# Mc/sec: 1633.37
//
Query:       MMETSP1174-20130828|7398_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.1   0.0      0.062   11.3   0.0    1.4  1  TIGR04116 CXXX_rpt_assoc: CXXX repeat peptide modification system protein


Domain annotation for each model (and alignments):
>> TIGR04116  CXXX_rpt_assoc: CXXX repeat peptide modification system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05     0.062       3      40 ..      93     129 ..      91     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
   TIGR04116   3 gkvteeErneieelfekiasLeelakilsekkneaeek 40 
                 + +t+  +n++++l+ek+a L++++ +++  +++   +
  MMETSP1174-20130828|7398_1  93 VLITNAAKNKVKSLHEKKAVLKHIEPAVE-GHHCSRRQ 129
                 579999*******************9994.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 863.59
//
Query:       MMETSP1174-20130828|7400_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 459.52
//
Query:       MMETSP1174-20130828|7402_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.54
# Mc/sec: 1486.10
//
Query:       MMETSP1174-20130828|7404_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-68  229.4   0.1    1.2e-67  226.4   0.1    1.9  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    3.3e-61  205.4   0.0      4e-61  205.1   0.0    1.0  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    4.5e-54  181.4   0.0    5.5e-54  181.1   0.0    1.0  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    2.9e-51  172.5   0.0    3.6e-51  172.2   0.0    1.1  1  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    6.6e-51  171.4   0.1    8.7e-51  171.0   0.0    1.1  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    6.7e-51  171.1   0.0    1.4e-50  170.1   0.0    1.4  1  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
      7e-47  157.8   0.0    3.5e-46  155.5   0.0    1.9  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    2.8e-45  152.7   0.0    3.5e-45  152.3   0.0    1.1  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    2.4e-29  100.3   0.0    1.7e-28   97.5   0.0    1.9  1  TIGR02316 propion_prpE: propionate--CoA ligase
    1.3e-24   84.5   0.0    1.4e-16   58.0   0.0    3.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    2.2e-15   53.7   0.3      9e-08   28.5   0.2    2.8  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    4.6e-11   39.8   0.0    4.6e-07   26.7   0.0    2.2  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
      7e-09   31.4   0.3    1.5e-06   23.7   0.3    2.5  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    1.7e-06   24.6   0.1      5e-06   23.1   0.0    1.7  1  TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.1   4.1e-70   1.2e-67      24     540 ..      62     570 ..      58     571 .. 0.90

  Alignments for each domain:
  == domain 1    score: 226.4 bits;  conditional E-value: 4.1e-70
   TIGR03205  24 pdllskaaadygarpale..frdraitytelealaetaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdlaallpmalkflekglldrlivcedeswgkvgtpkaaipadprivtyadfvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekratvfpgvptmwialandpslekrdlsslatigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywnraeesaeafvgdrfl.tgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklrega..kpfsldelraflagklgkh.elpvavelvdelprtsvgklsrhel 540
                  d++++  + +g r a+     + + t+tel+a +++ a +l+  g+ k   va+   n  d+    +  +k ga      pl     +++ +  sga++++t   +  +  ++       ++ +iv  d+      +p+ a+  +   ++      g a      ++ + d + l y+ gttg+pkg mlth n+   +   d+  +r    +g    +i  lp+fhiy +t  +l+   rg+ i    r+d++     +e+ + t    vp + + landp   + d+ssl+++ +  ap+  ev +  + k+g  +k  wgm+e    gt+   + p   g ig +l      v+ l+ + ++l pge gel i+gp+v +gyw++ ee+++++ ++ +l tgdi  +d+dgyff+ dr k++i   gf+v p  ie  + ++p + +  vi + d   ge  +a+v +   a   p s  ++ +++a k+  h +l   v +vd +p+ + gk+ r+ +
  MMETSP1174-20130828|7404_1  62 CDFVTEDWNTFGERLAIVngTTEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVASTVARARASQVENVIVFGDA------APTGAVSFNS--IRS----SGLALSSPVCDILPGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQTDICETRFMGPHG-SSTLISPLPMFHIYGFTTSMLSYAWRGHTIVTMTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIKQAWGMSELSPLGTCVVDDAPGPAGNIGPVLSNTLGKVIDLE-TGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDSEGWLkTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAADAlgDPPSEKDVTDYVASKVAPHkKLRGGVRFVDAIPKNAAGKILRKVV 570
                 56666677778888887522467889*****************************************************************************9887767666666777889999998775......3544443221..222....34444555679******************************999999999987666655.5789*************************************************************************************************************9*********************9999999996.6789*****************************9987766549*****************************************************************99988744799*************99835899****************99866 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1   0.0   1.4e-63     4e-61      19     507 ..      73     572 ..      58     573 .. 0.90

  Alignments for each domain:
  == domain 1    score: 205.1 bits;  conditional E-value: 1.4e-63
   TIGR02262  19 gdklafid..dvsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevl.aklpdleklvvvgak.pagekqlaellateseqekaaa.tkaddpafwlyssGstGapkGvvhvhsnlr...vtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerptpdavfdrlrrvkptifygvptlyaamladpelkaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrl.rlvd.dggedvadgevGellvsgpssaagywnnreksratfeGe.wtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykypr.wievvddlpktatGkiqrfklre 507
                 g++la ++  + ++ +++el+a +   a  l  +Gvk+ + v+++  + vd+    l  ++ G +    n l t+d+++ l+e s a+v++   + l v   v+ a+  ++e+++v g++ p+g +++  + +++    ++     + d +   yssG+tG+pkGv+ +h n+    + ++    + +g   +   +s   +f  yG+  +++     G t v m+ r   ++  + +++++pt  + vp +  ++ +dp + + d ++l ++++a  ++  ev +  k++ G di +  G +el  +  + + d+        pv    l +++d ++ge    ge Gel ++gp   +gyw+n e + + +  e w ++Gd    ++dG++  + r  +l+k  G  v p e+e  l++h+++ +aav+++ d+     p+a+vv++  a  d  +e+++ ++v +k+ap+k  r  +++vd +pk a+Gki r  +r 
  MMETSP1174-20130828|7404_1  73 GERLAIVNgtTEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVASTVArARASQVENVIVFGDAaPTGAVSFNSIRSSGLALSSPVCdILPGDCCALPYSSGTTGMPKGVMLTHDNICvnlWQTDICETRFMGPHGSSTLISPLPMFHIYGFTTSMLSYAWRGHTIVTMT-RYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIKQAWGMSELSPLGTCVVDDAPGPAGNIGPVLSNTLgKVIDlETGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDSEgWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAADALGDPPSEKDVTDYVASKVAPHKKLRgGVRFVDAIPKNAAGKILRKVVRA 572
                 6677766521446789*****************************************************************************999999988763788899999999998679************9999987626799**********************99752227899999****************************99999999988775.788899************************************************************************988766665554433333477777764677889******************************999997644***************************************************************************99999****************99994599**************988886 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.0   1.9e-56   5.5e-54      23     526 .]      59     571 ..      56     571 .. 0.89

  Alignments for each domain:
  == domain 1    score: 181.1 bits;  conditional E-value: 1.9e-56
   TIGR02275  23 ktltdileeqaakkpdaiaiicg..erkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivagk..eveeelksaleslaee..vkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveicelt.....qqtrylcalPaahnyplssPGalGvfyaGGcvvlaadpspteafpliekhkvtvtalvPpavalwldaaeksradlsslkllqvGGaklsealarrvpkvlgcklqqvfGmaeGlvnytrlddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkded....lkavqlrrflreaGlaeyklPdrvelidslPltavGkidkkalr 526
                 k+l d+++e  ++ ++++ai++g  e+  ++ el   +d++a sl  +G+kkgd + v  pn  ++  + +a++k+G++   a +   + e++   e + a++++++ +   +  +++a   +a+ s++++viv g+   + +  ++ + s   +  + + +  +++   +  s G+tG+pk +  thd+    + +  +ice        ++  ++ lP+ h y +++   l   + G ++v  +  + ++  +l+ek + t   lvPp+ +   +    +++d+ssl ++    a +s ++    +  +g  ++q +Gm+e     t + d++   +   G  +s+     +  e ge + +Ge+G l ++GP  ++Gy+k+ee  +k++d+eG+  tGd++k++++Gy  ++ r k+ i   G ++   eie  l++hp++ daa++ + d+  Ge   a++vv+ ++        ++  ++ ++   + kl   v+++d++P+ a Gki +k +r
  MMETSP1174-20130828|7404_1  59 KPLCDFVTEDWNTFGERLAIVNGttEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVA-STVA---RARASQVENVIVFGDaaPTGAVSFNSIRSSGLAlsSPVCDILPGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQ-TDICETRfmgphGSSTLISPLPMFHIYGFTT-SMLSYAWRGHTIVTMTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIKQAWGMSELSPLGTCVVDDAPGPAGNIGPVLSNTLGKVIDLETGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDSEGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAADAlgdpPSEKDVTDYVASKVAPHKKLRGGVRFVDAIPKNAAGKILRKVVR 571
                 799******************9833445789**********************************************************************9999877654433.2333...4678899999999963234456778888876662255668889*************************9999875.68998542222135678899********976.689**************************************999999999*******************************************99999999999999999999777777766666699************************************************************************************************************9998732223567889999998888899*******************999876 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   0.0   1.2e-53   3.6e-51       1     441 [.      88     569 ..      88     570 .. 0.83

  Alignments for each domain:
  == domain 1    score: 172.2 bits;  conditional E-value: 1.2e-53
   TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltd.slleekedlqaisldeleaeae........aeevs.................lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavg....saeklgftesdnWLlsLPlyHvsGlsi.lfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleesss...epeslrkiLLGGsaipaplieeaqek.glpiyksyGmTEtasqvvtlevevlkaktdsvGkplasv...eikikvdd...keghgeilvkganlmkgYlek.gelteaveeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses.....eiskakltaylkeklaKyK.vPiafekldelpkeasgKilRnk 441
                 tf el + +  +A  l   +v+kgdvva+l++n ++ + + la++++g+     n+  t  e t+ ++++  ++++t+ ++le   ++    ++++e            +                     +  ++   +  +l + Sg+tG pK+v  t+ n+ ++        ++ +g + s + ++ LP++H+ G +  ++     g t++  ++ + + + e +++ + t   lVp     l+++  +    + sl  +    + ++ ++ e +++k g++i +++Gm E  s + t  v+   + ++  G +l +     i ++  +   + + ge+ +kg+++mkgY+++ +e ++  + +GwlktgD++++d++g+ +++dR ++li   G  + p+eiE vl  +p++++a+v+p+ D   G+ P ay+++ +     + s++ +t+y+ +k+a +K +     ++d  pk+a gKilR+ 
  MMETSP1174-20130828|7404_1  88 TFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHpQCLEVASTVARARASQVEN--VivfgdaapT---GavsfnsirssglalsspVC-DILPGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQtdicETRFMGPHGSSTLISPLPMFHIYGFTTsMLSYAWRGHTIVTMTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITtqyDMSSLSMVVTAAAPMSPEVQEACKTKiGFDIKQAWGMSEL-SPLGTCVVDDAPGPAGNIGPVLSNTlgkVIDLETGEalgPGEEGELCIKGPQVMKGYWKNeEETSKCLDSEGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAAdalgdPPSEKDVTDYVASKVAPHKkLRGGVRFVDAIPKNAAGKILRKV 569
                 799999*******************************************************************9998626777333333333333333..1335555551...24445566666666444333.444566788********************998864311103344666666677777********86525667789*******************************9999998876653346678999999999999999999997669***********6.6777888888888899999999876222455655546668899****************967889999*************************************************************************998877887899*************88625667899**************86 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0     3e-53   8.7e-51      53     533 ..      86     567 ..      75     572 .. 0.84

  Alignments for each domain:
  == domain 1    score: 171.0 bits;  conditional E-value: 3e-53
   TIGR03208  53 rlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvv.pksfrgfdhaamarelqsklpalrqvvvvdg...dgdddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilay..a.er.lelgegdvilmaspmahqtgfmyglmlplvlrasavlq.diwnaakaaeliretgvtftmastafltdlaravkesgepvsslktflcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidad.gaklsagevgrllvraasnfggylkrphl..navdaegwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlkt...gasldfaalveflkaqkvalqyiperlvvrdalpatpagkiqk 533
                   ++ el+a +d  av l  +gv++gdvv++  pn  +++a  la  +iga+     p+    e++ +++ + +kv+v  p+ +      a        + ++ +v+v +     g+ +f+++  +    ++p  + il      p d + l y+sgttg pkgvm t + +  n+        r +   ++  ++   pm h  gf+   ml    r ++++    ++  +  el+ + + t      ++   la+    +   +ssl   + a ap+ + + e  ++ +g  i  awgm+e   + +  +dda   a+   g  l     kvid + g++l +ge g+l +++   + gy k  +    + d+egw+ tgd+a+ d +gy  i+ r k++i   g ++p  eie +l  hp +a+ a++   d   ge   a+vv+     g   +  ++++++ ++    + +   +  +da+p+  agki +
  MMETSP1174-20130828|7404_1  86 TRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVThPQCLEVASTVAR-----ARASQVENVIVFGDaapTGAVSFNSIRSSGLALSSPV-CDIL------PGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQTdiCeTRfMGPHGSSTLISPLPMFHIYGFTT-SMLSYAWRGHTIVTmTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIKQAWGMSELSPLGTCVVDDAPGPAGN-IGPVLSNTLGKVIDLEtGEALGPGEEGELCIKGPQVMKGYWKNEEEtsKCLDSEGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAAdalGDPPSEKDVTDYVASKVAPHKKLRGGVRFVDAIPKNAAGKILR 567
                 45899***********************************************************************9973555544333333.....3344566666665412257888988888665555555.4454......88999*************************975322213314556778888899********86.57777777777665166899999***********************99889999*************************************************99998886.5777888999****763789**********************986511568*******************************************************************777766655411266677889****98877778899999**************965 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   0.0   4.7e-53   1.4e-50      21     516 ..      82     572 ..      65     573 .. 0.85

  Alignments for each domain:
  == domain 1    score: 170.1 bits;  conditional E-value: 4.7e-53
   TIGR03098  21 lkdrtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaleda.lakchdlrtlilvdepekasekkagaevlsweklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnl....vaGaksvaqyLelredDrllavLPlsfDyGlnqlt.taflvGatvvlldyllpkDvlkavekekitglaavPPlWlqLakldwp.eeaaeslRyltnsGGalpkavlarlRkllpeaklylmYGLteafRstyLdPeevdrrPd...siGkaipnaevlvlr.edGsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGq...aivlvvvesdkeeldkkellkelrael.PaymvPakielrealprnanGkiDrkalaa 516
                 ++++t t+ +Ls+ + a+a  l  +g+k+g+ va+  +  ++ ++  +a++++g++    nPl  ++  + +++ + +k++vt  + l++ +++  a+ ++++++i++++ + + +      +++  +  +l  + + +d+++ d  a+ Y sG tG+Pkgv+l+h n+    ++     ++++  +   +l++ LP+   yG+     +    G t+v +     k   + vek++ t    vPP+ l La++ +  + +++sl ++  +   ++ +v  + ++++   ++   +G+ e    + L    vd  P+    iG  ++n+   v+  e G+   p+eeGel  +G+ v kGYW+++e+t ++                    GD+ + De+G++++  R  e+ik  G++v P e+e vl++ +++a+a+v+ v+dp+ G+   a v+v+ +  ++  ++k++   +  ++ P   +   + +++a+p+na Gki rk+++a
  MMETSP1174-20130828|7404_1  82 TTEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVASTVaRARASQVENVIVFGDAAPTGAV-----SFNSIRSSGLALSSPVCDILPGDCCALPYSSGTTGMPKGVMLTHDNIcvnlWQTDICETRFMGPHGSSTLISPLPMFHIYGFTTSMlSYAWRGHTIVTMTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITtQYDMSSLSMVVTAAAPMSPEVQEACKTKIG-FDIKQAWGMSEL---SPLGTCVVDDAPGpagNIGPVLSNTLGKVIDlETGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDSEGW-----------LKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGElprAYVVVAADALGDPPSEKDVTDYVASKVaPHKKLRGGVRFVDAIPKNAAGKILRKVVRA 572
                 457799***********************************************************************************98775157788999*******9944333.....3333333444444589****************************97622115666677889999*****************9865405556899999999999999**************************998577999**************99999988875.577778888885...5677778999996223678888888878886489999****************************99865443...........447********************************************************998443455555677777777777777776655288888999*****************99875 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   1.2e-48   3.5e-46      86     609 ..      83     578 ..      69     583 .] 0.85

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 1.2e-48
   TIGR02188  86 dsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGyll..laaltvkyvf.dikdedifwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqte...tGgilitplpgvatelkpgsatlP.lfGieaevvd.eegkeveeeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpd.kilvveelPktRsGkimRRllrkiaegee 609
                  +++ t++el + +  +a  l ++Gvkkgd va+  p  ++ ++  la+++iGa++s      +++ +++ i+ + ak+++t  +       +e+ ++v +a +   ++ve+v+v+  +            v ++++ +++   + ++ ++   d   + Y sG+tG+PkGv+ t     +  + +  +++ f   + + + +    +  + G +  + +    G t +    + t  d +rf+e++eky+ t  +  P +   l  + + +++++d+ssl ++ +   p+ pe  e  ++++G     i + w + e    G+ +++  pg      p+ +  P l     +v+d e+g+ + ++ee g L+ik   P ++++ +++ee   +      +g   tGD a+ d+dGy++i+ R+ ++i+  G ++  aeie  lv+h+++a+aav+ v+d   ge   a+vv+ + +  d    ek++++ v+++++p  k +  +++v+++Pk  +Gki+R+++r++ +++e
  MMETSP1174-20130828|7404_1  83 TEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQC------LEVASTVARARA---SQVENVIVFGDAAPT-------GAVSFNSIRSSGLALSSPVCDILPGDCCALPYSSGTTGMPKGVMLTHDNICVnlWQTDICETRFmGPHGSSTLISPLPMFHIYGFTTSMLSYAWRGHTIV----TMTRYDIKRFCELVEKYQPTRGHLVPPICLGL--ANDPITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGF---DIKQAWGMSElspLGTCVVDDAPG------PAGNIGPvLSNTLGKVIDlETGEALGPGEE-GELCIKG--PQVMKGYWKNEEETSKCLD--SEGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAADALGDP-PSEKDVTDYVASKVAPHKKLRgGVRFVDAIPKNAAGKILRKVVRAMDAESE 578
                 356789*****************************************************99999******************8765......566667766644...369*****9876655.......3477888887777778888889999******************966655544005444455555256788888888999999**9999999999999988....5567799**************99999986555..5678999******************************6...588889888833358888888888......444444515566789***999999999999.8****97..789*********7776654..5999***********************************************************************9999888.69**************9987637*********************9977665 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   1.2e-47   3.5e-45       1     409 []      88     501 ..      88     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 152.3 bits;  conditional E-value: 1.2e-47
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaevaleailleeleekaaedasaeeaaeak..............skpddlayviyTSGStGkPKgVlvehrslvnllaslar.ryel..seedrvlqfsslaFDl..sveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea..see.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                 t+ eL +  +++A  L ++g v++gd+Vavl +  v+ ++  lav+k Ga+    +p + ++ + +++e ++ak+++t+++  e +++va++++   e+     ++a++ + + +                 p d + + y SG+tG PKgV+++h++++  l+++   +  +   +++++l      F +  ++++++     G t+v++++ + k       +l+++++ t  +l+p +   la+    ++  ++sl +v++++  +++e+ e  + +++   + +++G +E +   t+     d+++   + +iG  l+n+   v+d + ++ + +g+ GEL+i+G++v++GY++++e+t++   ++         + +TGD++++++dG   +  R  + +K +Gf + ++Eie +l ++p+ ++a+v
  MMETSP1174-20130828|7404_1  88 TFTELSAGIDAFAVSLVDMG-VKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVASTVARARASQVENVIVFGDAAPTGAVSFNSirssglalsspvcdILPGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQTDIcETRFmgPHGSSTLISPLPMFHIygFTTSMLSYAWRGHTIVTMTRYDIK----RFCELVEKYQPTRGHLVPPICLGLANDPitTQYdMSSLSMVVTAAAPMSPEVQEACKTKIG-FDIKQAWGMSELSPLGTCVV---DDAPG-PAGNIGPVLSNTLGKVIDLEtGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDSE--------GWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAV 501
                 8899*************976.************************************************************999998887755544444444444444444444335566777776666644666799********************9877766554233334433444444443445442278899999999*999999999987....455666777788899999888888888776555677***************9999999998.89**********99887553...33444.3568**************9989****************************99987332........2789***********************************************997 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   5.7e-31   1.7e-28      65     601 ..      72     573 ..      57     582 .. 0.80

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 5.7e-31
   TIGR02316  65 rgeqlalvavssetgeertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadagarggkvieykklldaaiaeaqhkpahv..llvdrglaklrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgvqrdvggyavalaas..mdaif.gakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgkpvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpnekgllvvaaplppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavar.parvyvvaalpktrsgkllrraiqav 601
                  ge+la+v     t+e+rt  + +l   ++a+a  l  +gv++gd v +  p+  +   + la  +igai s      +s++++  i+ +  k+iv+              + l+ a + a+ + + v  ++v  + a     p   v + ++r      + +v  +   +   + y+sgttg pkgv       +v l  +   ++ f g +  ++l+s   +  + g +  + +    g + v    + tr d   + ++veky+ ++    p     l         ++d+ssl ++  a  p+     +     +g  +  + w      p+ +    +dd p   g  g  +     +v+d  tge  gp+e g l++++p     ++  w+++    k+   + ++    + d +  dedgy fi  r  ++i+  g ++   eie  + +h+ +a++av+ v+d+  g+++ a++++  ad+++d+      ek++ + v s++    +    v +v+a+pk  +gk+lr+ ++a+
  MMETSP1174-20130828|7404_1  72 FGERLAIV--NGTTEETRT--FTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTH------------PQCLEVASTVARARASQVenVIVFGDAA-----PTGAVSFNSIRSSGLALSSPVCDILPGDCCALPYSSGTTGMPKGVMLTHDNICVNLWQTdiCETRFmGPHGSSTLISPLPMFHIYGFTTSMLSYAWRGHTIV----TMTRYDIKRFCELVEKYQPTRGHLVPPICLGLAND--PITTQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIK-QAWGMSELSPLGTC--VVDDAPGPAGNIGPVLSNTLGKVIDLETGEALGPGEEGELCIKGP---QVMKGYWKNEEETSKC---LDSEGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVA-ADALGDPP----SEKDVTDYVASKVAPHKKlRGGVRFVDAIPKNAAGKILRKVVRAM 573
                 56666665..455666665..6699**********************************************987666666666665655555555543............3445555444444444431144444444.....445677*********99***999999********************99999999996542234555155666788888888888888888888888888766....568999999*********99988888765555443..45679****************98888888888888765.56766666677654..5899999999999777777779********************996...689******9987665...4557788999*****************************************************************98.77777765....577888888888877665256799****************99997 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     4e-08   1.2e-05      21     227 ..      82     310 ..      74     316 .. 0.65
   2 !   58.0   0.0   4.7e-19   1.4e-16     328     497 ..     403     569 ..     390     574 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 4e-08
   TIGR01734  21 eegqeltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvievaelsielvete.vitlealeeieeeka....ea..........velekavke...ddnyyiiytsGstGkPkGvqishdnLvs...ftnWiledfklseekqllnqap.....ysfDLsvmdlyPsLasGGtLvaldkeitnnfkeLfe 227
                 ++++  t+ eL +  d++a  l +  +++ + + v   ++ + ++  l+ +k G      +  ++++  +k++e++ ++++++     +e+ +t  + +++++e++   ++     a          + l++ v +    d   + y sG+tG PkGv + hdn+      t+   + f+  +++ +l  ++     y f  s++++      G t+v++++  ++ f eL e
  MMETSP1174-20130828|7404_1  82 TTEETRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHP-QCLEVASTVaRARASQVENVIVFGDaaptGAvsfnsirssgLALSSPVCDilpGDCCALPYSSGTTGMPKGVMLTHDNICVnlwQTDICETRFMGPHGSSTLISPLpmfhiYGFTTSMLSY---AWRGHTIVTMTRYDIKRFCELVE 310
                 567788************************************************9999999999999999999999998776543.334433333244555554443221101111100000000112334444443337999999******************8541213455555588888777776665122223444444433...34577777777777777666665 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 4.7e-19
   TIGR01734 328 lfivdee.GeklsegekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvake...edfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrka 497
                  +++d e Ge l  ge+Ge+ i+G+ v kGy +n+e t +   +   +   +tGD +++++dg++f+  rl   ik+nG+++   +ie  l     + +a+v+P++++    e   a+vv       d  +e ++t  +    +k+ ++  +   + + d +p +a Gki rk 
  MMETSP1174-20130828|7404_1 403 GKVIDLEtGEALGPGEEGELCIKGPQVMKGYWKNEEETSKCLDS---EGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDP-SAGELPRAYVVVAAdalGDPPSEKDVTDYVA---SKVAPHKKLRGGVRFVDAIPKNAAGKILRKV 569
                 57899777*******************************99754...34579******************************************************54.3334445666555512223333333333332...2233444444455677777777777777765 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   3.1e-10     9e-08     114     285 ..      86     241 ..      70     256 .. 0.67
   2 !   20.8   0.0   6.8e-08     2e-05     379     622 ..     334     572 ..     327     581 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.1e-10
   TIGR01217 114 kvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvy..nGkehdrrekvrevakelpdlravvlipyvgdreklapkvegaltledllaa.aqaaelvfeqlpfdhplyilfssGttGvpkaivhs 285
                   tf el + +  +a +l  +GvkkGd va + pn  + +a  la   +Gai s + p     +  d f++    l+ s  + v     +  ++ ++v++ + +  ++++v++    g     ap   ga+ ++ + ++ +  + +v + lp d    + +ssGttG+pk ++ +
  MMETSP1174-20130828|7404_1  86 TRTFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPL----STSDEFTK----LIESSGAKVIvtHPQCLEVASTVARARAS--QVENVIV---FG---DAAP--TGAVSFNSIRSSgLALSSPVCDILPGDC-CALPYSSGTTGMPKGVMLT 241
                 359*************************************************7666664....44466653....33333332220022333444555444433..2344444...34...3344..5666666666654455688888888765.4577999999999987655 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.8e-08
   TIGR01217 379 rthdlsalrlvastGsplkpegfeyvyeeikadvlla.sisGGtdivscfvganpslpvykGeiqapglGlaveawdeeGkpv.tgekGelvvtkplpsmpvrfwndedGskyrkayfdkypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigqeqedgeervvlfvklasGatldealvkeikdairaglspr.hvpskiievagiprtlsGkkvevavkd 622
                  ++d+s+l +v+++ +p++pe  e    +i  d++ a  +s  + + +c v + p     +G + ++ lG  ++   e G+++  ge+Gel +  p   m   + n+e+ sk  ++     +g  + Gd +++   G   i  r    +  nG ++  aei  ++   ++++++ vi+   +  +e    +v +a+ a  d+   k++ d + + ++p  ++   +  v+ ip+  +Gk++   v+ 
  MMETSP1174-20130828|7404_1 334 TQYDMSSLSMVVTAAAPMSPEVQEACKTKIGFDIKQAwGMSELSPLGTCVVDDAPGPAGNIGPVLSNTLGKVIDL--ETGEALgPGEEGELCIKGP-QVMKGYWKNEEETSKCLDS-----EGWLKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIPVTDPSAGELPRAYVVVAADALGDPPSEKDVTDYVASKVAPHkKLRGGVRFVDAIPKNAAGKILRKVVRA 572
                 468******************************988747999999*************************99997..667777359****976654.4555555588899998886.....677889********************************************************999999*********99**************999861577889999**********99887775 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   9.8e-05     0.029     103     169 ..     228     296 ..     223     304 .. 0.78
   2 !   26.7   0.0   1.6e-09   4.6e-07     271     385 ..     445     565 ..     430     566 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.8e-05
   TIGR02372 103 tsGstgtPkPv..thswaaLlreaealakalgerpapvravialvPahhlyGflfsvllPeaaGaevke 169
                  sG+tg Pk v  th    +      + ++  + p+   + i+ +P  h+yGf  s+l    +G ++  
  MMETSP1174-20130828|7404_1 228 SSGTTGMPKGVmlTHDNICVNLWQTDICETRFMGPHGSSTLISPLPMFHIYGFTTSMLSYAWRGHTIVT 296
                 6999****98733566554444455566666666********************999988888888765 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.6e-09
   TIGR02372 271 dgaarrldlqdrlrWddervfvieGrldeilqvgGvnvspghvkdvLeaepavealavr.....ldGerLkafivvaeda..deeeleaeLrataaehL.paparPddlrfgteLPrtaaGkl 385
                 d  +  l+  d  ++d+++ f i+ rl e+++  G  v p++++ vL ++p+ +++av      + Ge  +a++vva+da  d+   e+++   +a ++ p  +     rf  ++P++aaGk+
  MMETSP1174-20130828|7404_1 445 DSEGW-LKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVIpvtdpSAGELPRAYVVVAADAlgDPP-SEKDVTDYVASKVaPHKKLRGGVRFVDAIPKNAAGKI 565
                 56665.88889999*******************************************9633333678899********9954444.566666666655514444456799**********996 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.3     5e-09   1.5e-06     246     437 ..      69     242 ..      40     327 .. 0.77
   2 !    4.8   0.0    0.0025      0.74     680     732 ..     450     502 ..     433     552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 5e-09
   TIGR03443 246 aekhPdrtcvvetksalapssktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivlekaGeldelvedyiedelelvteipalklqddGsleGgklekeetdvlasyeklkdkktgvvvGPdsnptlsftsGseGiPkGvkGrh 437
                  + + +r  +v+ ++      +tr  t+ ++    +  a  l++ G+k+gdvv+v +   vd + + l v+k Ga+ s  +P    +  t  ++ +  + +++  +  e++++v           +++ ++ +  d + +G+ + ++   + +s  +l +   + ++ P    +l + sG++G+PkGv   h
  MMETSP1174-20130828|7404_1  69 WNTFGERLAIVNGTTE-----ETR--TFTELSAGIDAFAVSLVDMGVKKGDVVAVLSPNDVDYIACCLAVVKIGAITSCANPLSTSDEFTKLIESSGAKVIVTHPQCLEVASTVARAR------ASQVENVIVFGDAAPTGAVSFNS---IRSSGLALSSPVCD-IL-PGDCCALPYSSGTTGMPKGVMLTH 242
                 5566666666665555.....455..555888999999********************************************999998888888888888888777777777776654......35566666677766666655444...34444444444444.44.445677899999999999987666 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0025
   TIGR03443 680 yrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvrenvtl 732
                  +tGd+ ++  dG    + r  + +k  Gf++   ei+  l  hP++ +   +
  MMETSP1174-20130828|7404_1 450 LKTGDIAKFDEDGYFFITDRLKELIKYNGFQVPPAEIEGVLVTHPKLADAAVI 502
                 58*******************************************98776555 PP

>> TIGR02155  PA_CoA_ligase: phenylacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08     5e-06      83     279 ..     228     425 ..     221     520 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
   TIGR02155  83 ssGttGkptvvaytqkdl..dtwsevvarslraa.GGrkgdl..lhnayGyGlftGGlGvhyGaeklGatvvpisGGqtekqvqliqdfkpdiiavtpsyilalleelkrlgidpedislkvailGaepwteamrkelearlgikaldiyGlsev..iGpGvanecve..tkdGlviwedhfypeiidpetgevlpdGeeGelvft 279
                 ssGttG p  v  t+ ++  + w + +  +  +   G++  +  l + + yG+ t  l         G t+v ++  + ++  +l++ ++p      p  +l l+++   ++ d +  sl + +  a p + +++++ ++++g +  + +G+se+  +G  v  ++     + G+v+ +     ++id etge+l  GeeGel + 
  MMETSP1174-20130828|7404_1 228 SSGTTGMPKGVMLTHDNIcvNLWQTDICETRFMGpHGSSTLIspLPMFHIYGFTTSMLSYA----WRGHTIVTMTRYDIKRFCELVEKYQPTRGHLVPPICLGLANDPITTQYDMS--SLSMVVTAAAPMSPEVQEACKTKIGFDIKQAWGMSELspLGTCVVDDAPGpaGNIGPVLSN--TLGKVIDLETGEALGPGEEGELCIK 425
                 99****9998888777653388987666554443133333221245566788777777643....3599************************************99877777766..56667889****************************9445666666554311344565554..5799*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.92u 0.18s 00:00:01.10 Elapsed: 00:00:00.60
# Mc/sec: 1282.49
//
Query:       MMETSP1174-20130828|7405_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-08   29.7   0.1    1.3e-07   29.2   0.1    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    4.8e-05   20.4   0.0    7.3e-05   19.8   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00023   18.4   0.0    0.00036   17.8   0.0    1.2  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
     0.0004   18.5   0.0    0.00067   17.8   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0014   15.8   0.0     0.0023   15.1   0.0    1.3  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
     0.0018   15.6   0.1      0.003   14.9   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0032   15.1   0.0     0.0049   14.5   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0059   13.8   0.0     0.0086   13.2   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0062   13.7   0.0     0.0092   13.1   0.0    1.2  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0077   13.9   0.0       0.16    9.6   0.0    2.1  2  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
      0.018   12.2   0.0      0.033   11.3   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      0.032   11.5   0.0      0.077   10.2   0.0    1.6  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
      0.039   10.6   0.0      0.055   10.1   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   4.1e-10   1.3e-07      76     149 ..     120     194 ..     116     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.1e-10
   TIGR03534  76 LveaaleelkkkeklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglke.veflksdlle 149
                 +++aal+++++++ +  lDlg+GsG  a+ la++l ++++vi+vD + +Al+ a++ a+r g+ + v++l+ dl +
  MMETSP1174-20130828|7405_1 120 VLDAALRAAPEDK-AIALDLGCGSGRDAVFLAQQLgSNWRVIGVDNHGDALQRAARLAERSGVGDrVTWLNRDLRK 194
                 5678899998888.7889****************9789*************************999****999854 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.3e-07   7.3e-05     118     174 ..     135     192 ..     120     201 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.3e-07
   TIGR00536 118 ilDlgtGsGcIalalAleip.naeviavDistdalavaeeNaeklkleerveliqsnl 174
                  lDlg+GsG  a+ lA ++  n  vi+vD   dal+ a + ae+ ++ +rv  +  +l
  MMETSP1174-20130828|7405_1 135 ALDLGCGSGRDAVFLAQQLGsNWRVIGVDNHGDALQRAARLAERSGVGDRVTWLNRDL 192
                 59***************996599****************************9998887 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06   0.00036     118     181 ..     128     192 ..     104     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.2e-06
   TIGR03533 118 ekeevkrvldlctGsGClaiaaaeaf.peaevdavDisedaLevaeenieeyeledrveliqsdl 181
                 ++e+ + +ldl +GsG  a+ +a++  ++++v  vD   daL+ a++  e+ ++ drv+ ++ dl
  MMETSP1174-20130828|7405_1 128 APEDKAIALDLGCGSGRDAVFLAQQLgSNWRVIGVDNHGDALQRAARLAERSGVGDRVTWLNRDL 192
                 46677779*************999874689*****************************999887 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-06   0.00067      16      80 ..     128     201 ..     121     249 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.1e-06
   TIGR02469  16 rlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsniei.vegdap.......k 80 
                 ++++++ +lD G+G+G  ++ +a+++++  rv++++ + +al+   + ++r gv + ++ ++ d          
  MMETSP1174-20130828|7405_1 128 APEDKAIALDLGCGSGRDAVFLAQQLGSnWRVIGVDNHGDALQRAARLAERSGVGDRVTwLNRDLRkhdaladL 201
                 344455889*****************999**************9999999998776554144444444444541 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.4e-06    0.0023      15      69 ..     130     186 ..     123     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.4e-06
   TIGR00091  15 nkkplvleiGcGkGrfliklAkqn.peknflGiEiekpivlkainkaeklglk.Nlk 69 
                 ++k + l++GcG+Gr  + lA+q   ++ ++G+  +     +a   ae++g+   + 
  MMETSP1174-20130828|7405_1 130 EDKAIALDLGCGSGRDAVFLAQQLgSNWRVIGVDNHGDALQRAARLAERSGVGdRVT 186
                 6899******************973689********999999999999999864455 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.5e-06     0.003     160     219 ..     132     192 ..     122     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.5e-06
   TIGR00406 160 dkkviDvGcGSGiLsiaal.klgaa.kvvavDiDplavesarkNlelNqvsdllqvklenle 219
                 +  ++D+GcGSG  ++ ++ +lg + +v++vD+   a++ a + +e+ +v d++   + +  
  MMETSP1174-20130828|7405_1 132 KAIALDLGCGSGRDAVFLAqQLGSNwRVIGVDNHGDALQRAARLAERSGVGDRVTWLNRD-L 192
                 45679*******9998755155655489************************99988774.3 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05    0.0049      79     119 ..     133     174 ..     123     191 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-05
   TIGR00080  79 akvLeiGtGsGYqaavlaelvgrdglvvsieri.eeLvekae 119
                 a +L++G+GsG  a+ la+ +g +  v++++   + L+  a+
  MMETSP1174-20130828|7405_1 133 AIALDLGCGSGRDAVFLAQQLGSNWRVIGVDNHgDALQRAAR 174
                 558***************************854155666655 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05    0.0086      52     107 ..     134     193 ..     111     201 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
   TIGR01983  52 kvlDvGcGgGllseslarl...gaevtgiDlseelievAklhakkdplk.kieyelksve 107
                   lD+GcG+G  +  la++   ++ v+g+D   ++++ A   a+++++  ++ +  +++ 
  MMETSP1174-20130828|7405_1 134 IALDLGCGSGRDAVFLAQQlgsNWRVIGVDNHGDALQRAARLAERSGVGdRVTWLNRDLR 193
                 569*******988888875322466**************999999998767777666665 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.9e-05    0.0092      76     109 ..     134     170 ..     113     189 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.9e-05
   TIGR00477  76 ktldlGcGqGrnslylsla.G..ydvdavdkneasia 109
                  +ldlGcG Gr++++l+ + G  + v  vd+   ++ 
  MMETSP1174-20130828|7405_1 134 IALDLGCGSGRDAVFLAQQlGsnWRVIGVDNHGDALQ 170
                 479*************964231145666666655555 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00051      0.16      34      92 ..     131     196 ..     120     206 .. 0.77
   2 ?    2.0   0.0       0.1        32     122     139 ..     237     254 ..     225     258 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00051
   TIGR02072  34 epakvLdiGcGtGiltrallkr.fpqaelialDiseemleqakkkls......nvqficgdieklp 92 
                 ++a +Ld+GcG+G     l+++  ++ ++i +D+    l++a +  +      +v+++  d++k++
  MMETSP1174-20130828|7405_1 131 DKAIALDLGCGSGRDAVFLAQQlGSNWRVIGVDNHGDALQRAARLAErsgvgdRVTWLNRDLRKHD 196
                 45789********8666665551566679*****99999999988777889998999999988876 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.1
   TIGR02072 122 rvlkpgGllafstfgket 139
                 +vl +gG+++ stf+++t
  MMETSP1174-20130828|7405_1 237 TVLASGGVFIWSTFMEGT 254
                 6899**********9986 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001     0.033      37      96 ..     129     191 ..     121     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
   TIGR01934  37 eekeekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakek.eeanvefiead 96 
                 +e ++  lD+ +G+G+ a+ la++ +   +v+gvD   + L+ a++ a+ +    +v++++ d
  MMETSP1174-20130828|7405_1 129 PEDKAIALDLGCGSGRDAVFLAQQLGsnWRVIGVDNHGDALQRAARLAERSgVGDRVTWLNRD 191
                 4466678************99999998999************999988888888899998876 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024     0.077       3      33 ..       8      38 ..       6      40 .. 0.92
   2 ?   -2.5   0.0       1.8   5.8e+02      64      83 ..      84     103 ..      68     113 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00024
   TIGR03167  3 kpliDvRspaEfaegalpgalnlpllndeer 33
                kpliD Rs++ f++ ++ ga++lpl + eer
  MMETSP1174-20130828|7405_1  8 KPLIDLRSNILFEQCHVSGATSLPLPQLEER 38
                79**********************9888887 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
   TIGR03167  64 leevqelaekekevllyCwR 83 
                  +++++l +++ +  + CwR
  MMETSP1174-20130828|7405_1  84 AAAFTHLVTEHGDKSVACWR 103
                 55667788888889999999 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017     0.055     294     349 ..     132     191 ..     118     205 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00017
   TIGR00479 294 eekvvDaycGvGtftlplAkqaks...vvgvevvkesvekakrnAelngia.nveflage 349
                 +   +D+ cG G  +++lA+q  s   v+gv+   +++++a+r Ae+ g+   v++l+ +
  MMETSP1174-20130828|7405_1 132 KAIALDLGCGSGRDAVFLAQQLGSnwrVIGVDNHGDALQRAARLAERSGVGdRVTWLNRD 191
                 44568****************8643339*******************9985146776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1259.55
//
Query:       MMETSP1174-20130828|7406_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-29  100.3  19.1    4.6e-29   99.5  13.2    1.4  1  TIGR00803 nst: UDP-galactose transporter
    0.00089   16.8  19.1      0.017   12.7   2.1    2.2  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5  13.2   2.2e-32   4.6e-29       2     222 .]     137     366 ..     136     366 .. 0.94

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 2.2e-32
   TIGR00803   2 lsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssaktlsegnlvvglsavlsallssglagvyfekilkdkdts.f.....yvrnlqlplfgllvt..fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 l+VP+ ++ +q +l +va++n++aa ++v  q k+l+ta++++ +l ++l + q++sl  l++gv  ++l    a   s gn+++g+ a l+  l sg+a vy ek++k+++t  +     + + +q  l g++++   + +l++d + i ++g     + a  ++v+++++ggl+v++v k+ad ++k+ ++a+s +l  +ls+ +f+  l l  +lg+i v+ +++lY
  MMETSP1174-20130828|7406_1 137 LAVPAGVYNLQQTLEYVAMSNIDAAFFSVLvQTKLLTTAIFSVFLLGRKLRKVQVISLIVLTTGVMLANLRGGGAADGSVGNMMTGIWATLGISLASGFAAVYTEKVIKSQKTAkVqtkkySLAYMQVQLAGMSLLviGCWALVKDHEKIMENGLWHNFNGAACVSVINSALGGLIVAAVLKFADAVLKGYATAISVMLTGVLSMFFFGTILRLEYFLGMINVVCSVVLY 366
                 8*************************************************************************99999******************************998765533332677888888888776445667789************************************************************************************9 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.1     8e-06     0.017     199     280 ..     119     203 ..      68     204 .. 0.80
   2 !   10.0   5.7   5.1e-05       0.1     156     280 ..     236     365 ..     215     366 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8e-06
   TIGR03340 199 rkraiveearqil...asatlgglligsaYalvlyAmtllpvalvvalrevsivlavllgilllnekvtlkrllgvviivaGlvv 280
                 + r+i+e  r+++    ++++ + +     +l   Am ++++a+   l ++ ++ +++++++ll+ k    ++++ +++++G+++
  MMETSP1174-20130828|7406_1 119 SFRSIFEFLRNDWwngILLAVPAGVYNLQQTLEYVAMSNIDAAFFSVLVQTKLLTTAIFSVFLLGRKLRKVQVISLIVLTTGVML 203
                 55666665555551113444555556667788899************************************************97 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 5.1e-05
   TIGR03340 156 taiYs..viDkavalevaasssallylaiqflaagl.vllllylkr.rkraiveearqilasatlgglligsaYalvlyAmtllpvalvval.revsivlavllgilllnekvtlkrllgvviivaGlvv 280
                  a+Y+  vi    + +v+ +   l y+ +q   ++l v+  + l + +++ + +  +++   a+  +++ ++  +l++ A+ +   a++  + + +s++l+ +l++++++    l+  lg++ +v  +v+
  MMETSP1174-20130828|7406_1 236 AAVYTekVIKSQKTAKVQTKKYSLAYMQVQLAGMSLlVIGCWALVKdHEKIMENGLWHNFNGAACVSVINSALGGLIVAAVLKFADAVLKGYaTAISVMLTGVLSMFFFGTILRLEYFLGMINVVCSVVL 365
                 566654466667788899999999******998875267789875516666666678899999999999888899999998877766666552789***************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1522.00
//
Query:       MMETSP1174-20130828|7412_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|7413_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 177.68
//
Query:       MMETSP1174-20130828|7409_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-36  124.0   0.0    2.3e-36  123.2   0.0    1.3  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    3.3e-13   47.3   0.0    4.3e-07   27.4   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
  ------ inclusion threshold ------
      0.013   13.2   0.0       0.06   11.0   0.0    1.9  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
      0.037   11.3   0.0       0.29    8.4   0.0    2.0  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.0   2.3e-39   2.3e-36      47     221 ..      22     207 ..       7     221 .. 0.84

  Alignments for each domain:
  == domain 1    score: 123.2 bits;  conditional E-value: 2.3e-39
   TIGR01258  47 lefdvaytsllkraiktlnivldeld.qlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpe.ldekdersp.....kkdrryaklkkk....elPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkp 221
                  +fdv++ts l+ra +t+ iv +el   + + + + Wr+ne+ yG l+G++ka ++ k+G++qv  wrr++   Pp+ l    e++       ++ r  ++++         tes++++ erv  +w+++++pe+ sg rvliv hGn lral++ +e+ls ++  el iP   P+ y++  + + 
  MMETSP1174-20130828|7409_1  22 GKFDVVFTSKLRRAHDTAAIVCKELGyDSKVMIDQDWRVNEQMYGGLTGMNKARAIVKFGHDQVYKWRRGWSEGPPShLAGTGETTGwepigCQNGRSCDVEEGsyeaAHVGTESFQEIGERVKEWWDEKVVPEVASGSRVLIVGHGNMLRALLQSMEDLSPTQTKELTIPRCNPIHYQFTTSDRA 207
                 47**********************98346899***************************************988876244333332222333566777777765343345579******************************************************************9877665 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.7e-07   0.00028      31     108 ..      11      94 ..       2     107 .. 0.74
   2 !   27.4   0.0   4.2e-10   4.3e-07     107     171 ..     127     194 ..     101     198 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.7e-07
   TIGR03162  31 qaaalrekledvkfdavvsSplsRcrelAella....eklklpiekddrLrEmdfGdwEgksydeisekyp..eldawakdlah 108
                  +a  r+k+ + kfd v++S l+R++++A+++      + k+ i +d r +E  +G   g++ ++   k+   ++ +w + + +
  MMETSP1174-20130828|7409_1  11 ASAPRRDKVIEGKFDVVFTSKLRRAHDTAAIVCkelgYDSKVMIDQDWRVNEQMYGGLTGMNKARAIVKFGhdQVYKWRRGWSE 94 
                 5555567777899****************9987333356677788999999*99998888776666556555788888887765 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 4.2e-10
   TIGR03162 107 aharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsieveyg 171
                  +a+  g Es++++ +Rv+e+++e +     ++ +vliv+Hg ++rall  +++l+ +q+ +++++ +
  MMETSP1174-20130828|7409_1 127 YEAAHVGTESFQEIGERVKEWWDEKVVPevaSGSRVLIVGHGNMLRALLQSMEDLSPTQTKELTIPRC 194
                 56777899**************987665578899*********************9999998887766 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.9e-05      0.06      42      71 ..      21      51 ..       8      61 .. 0.83
   2 ?   -0.8   0.0      0.26   2.7e+02      89     119 ..     149     179 ..     133     190 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.9e-05
   TIGR00249 42 gveldrilvSplvRAeqtaeivadald.esk 71
                + ++d +++S l+RA +ta iv ++l+ +sk
  MMETSP1174-20130828|7409_1 21 EGKFDVVFTSKLRRAHDTAAIVCKELGyDSK 51
                5689********************9984444 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.26
   TIGR00249  89 dyleelkeegvksvllvsHlPllgelvaeLl 119
                 d + + +  +   vl+v+H   l  l + + 
  MMETSP1174-20130828|7409_1 149 DEKVVPEVASGSRVLIVGHGNMLRALLQSME 179
                 5555555556667999999887777766555 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00028      0.29      47      91 ..      24      72 ..       5      87 .. 0.78
   2 ?    0.5   0.0     0.073        75     132     161 ..     147     176 ..     127     191 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00028
   TIGR03848 47 iaaivssPlercretveaiaeargleva..v..derltevdYGdWtGre 91
                 + + +s l+r+++t++ + +++g + +  +  d r++e  YG  tG +
  MMETSP1174-20130828|7409_1 24 FDVVFTSKLRRAHDTAAIVCKELGYDSKvmIdqDWRVNEQMYGGLTGMN 72
                57799*****************955443224115689******999964 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.073
   TIGR03848 132 eldarleeehgpdavwvavshgDviksvla 161
                  +d+++  e  +++  ++v hg++++++l 
  MMETSP1174-20130828|7409_1 147 WWDEKVVPEVASGSRVLIVGHGNMLRALLQ 176
                 36888889999999999*******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1075.91
//
Query:       MMETSP1174-20130828|7414_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1815.74
//
Query:       MMETSP1174-20130828|7410_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-105  351.3  28.5      1e-55  186.9   9.3    2.3  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    1.7e-80  268.3   0.0    3.5e-80  267.3   0.0    1.5  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
      1e-22   77.6  29.2    2.1e-14   50.1   7.0    3.2  2  TIGR00845 caca: sodium/calcium exchanger 1
    4.9e-09   33.3  22.9    1.9e-08   31.3   5.4    2.7  2  TIGR00846 caca2: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   9.3   9.8e-59     1e-55     457     616 ..     111     272 ..     107     309 .. 0.91
   2 !  172.7   3.1   1.8e-54   1.9e-51    1023    1196 ..     574     750 ..     456     756 .. 0.90

  Alignments for each domain:
  == domain 1    score: 186.9 bits;  conditional E-value: 9.8e-59
   TIGR00927 457 vvlhifGmlyvfvalaivcdeyfvpalGvitdklqisedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalfsrei...lnltwwplfrdvsfyildlimlilffldsliawweslllllayalyvftmkwnkqlelwvkeql 616
                 v l i G+ly+f+ +aivcde fvpal +i++k ++s+dvaGat+maaGGsapelftsli  f   s++G  tivGsavfn+lfvi  cal +      l ltwwpl rd +fyil li l++f+ d  i  we++l +l y lyv  m +   le +v   l
  MMETSP1174-20130828|7410_1 111 VFLSIVGLLYMFLGIAIVCDEIFVPALEIISEKWELSNDVAGATLMAAGGSAPELFTSLIASF-DRSDMGFSTIVGSAVFNVLFVIAMCALCTPMKfcpLALTWWPLARDCTFYILTLITLVVFMADGKIELWEAILQFLMYVLYVIIMYYSSTLEAYVTGSL 272
                 7899*********************************************************99.78*************************8754223399*********************************************************98766 PP

  == domain 2    score: 172.7 bits;  conditional E-value: 1.8e-54
   TIGR00927 1023 fllpivfplwltvpdvrrlearkffvitflGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqpv....pvssnGlfcaivllflmllfvissialckwrmnkilGftmfllyfvfliisv 1196
                    lp+++  +  vpd r      +   +f+Gsi+ ia +s++mv++a  +G+   i   imG+t+laaGts+pdl++svivar+G Gdmavsss+Gsnifd+tvG+plpw+lfs+  g++      +v  + l+    +l+lm+++v+  ia+  w+m   lG+ mf+lyf +l  ++
  MMETSP1174-20130828|7410_1  574 ISLPLLLV-FCLVPDCRAPGRENWCFASFFGSIVCIAGLSWVMVYFASGIGDFFEIPTFIMGVTVLAAGTSVPDLLSSVIVARQGHGDMAVSSSIGSNIFDVTVGIPLPWILFSIFAGINDCtygpTVDKDDLLVPTFILLLMVFLVVVIIAAGGWKMTHSLGYVMFVLYFGYLSFAL 750 
                  44555443.3459****9999999999****************************************************************************************9999876333358999****************************************9997665 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.3   0.0   3.4e-83   3.5e-80       3     312 .]     114     745 ..     111     745 .. 0.84

  Alignments for each domain:
  == domain 1    score: 267.3 bits;  conditional E-value: 3.4e-83
   TIGR00367   3 lvigllilglilvivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsrei....lvltkl.lkrdvsfllvvlillliflldgv...lesllllvllflyvvylkflvkverkqain.................................................................................................................................................................................................................................dtlteeqvdenerq..........................................................rkqitfllvllivg........................ltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallat.......irvkpvavsldalvlvivlll.lllivvilsialkrw.....lglillalYiay 312
                   +gll+++l ++iv++e++v++l+ i+ek ++s++v+G+T++aag+S+PElftslia++  +sd+g +t+vGS++fN+l+v+ +cal + ++    l+lt++ l rd++f++++li l++f+ dg+   +e +l + +++lyv+ + +    e     +                                                                                                                                                                                                                                  + t+e+v+e e++                                                          r +i f + l+ +                         +++++  s ++V+ a  i++ ++i+  i+G+t+lAaGTS+p+L+ svi+ar+g gd+av+s++GsNifd++vg++lp++l          +  p+  + d lv  ++lll ++l+vvi  ia + w     lg ++++lY+ y
  MMETSP1174-20130828|7410_1 114 SIVGLLYMFLGIAIVCDEIFVPALEIISEKWELSNDVAGATLMAAGGSAPELFTSLIASFD-RSDMGFSTIVGSAVFNVLFVIAMCALCT-PMkfcpLALTWWpLARDCTFYILTLITLVVFMADGKielWEAILQFLMYVLYVIIMYYSSTLEA--YVTgsllqpagtssvihceplkearsngdnkihvsnnttdveecvvkdmngdstkdvtprnnednqsdtmallnekkngeesshehksfnrpsgfragilqiltakgdmmdtagvhcvskikgdvnkvfaeldanddgnldlselknllsmmgipdhelsvekvktyfeqkfkdssanyitkaefvkwyltsesriqsemkecfdkvdlnhngtverselkvllqnlgHKATDEEVAEEEKRmnvsdagmtlrdfeewykesifygqqvtvgeeaaesvesiwgtvksgcgslgdkelplRAKISFIISLPLLLvfclvpdcrapgrenwcfasffgsIVCIAGLSWVMVYFASGIGDFFEIPTFIMGVTVLAAGTSVPDLLSSVIVARQGHGDMAVSSSIGSNIFDVTVGIPLPWILFSifagindCTYGPTVDKDDLLVPTFILLLmVFLVVVI--IAAGGWkmthsLGYVMFVLYFGY 745
                 5789*******************************************************95.79************************98.5522335789999***********************5556666666666666665555555555..3335799***********************************************99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888888888888888888888888888888888888888888888888888888888888866677777776666899999999*******************************************999999555555554444334477778888888888888888889999999************************************************************************998784443322233333445555444443303344443..44444444555*********976 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   7.0   2.1e-17   2.1e-14      75     250 ..     111     262 ..     100     351 .. 0.75
   2 !   27.8   7.7   1.1e-10   1.1e-07     725     917 ..     570     756 ..     557     760 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 2.1e-17
   TIGR00845  75 avvyfvalvylflGvsiiadr.fmasievitskekeivvkkpngettvvtvriwnetvsnltlmalGssaPeillsvievvgknfeaGdlGPstivGsaafnlfiiiaicvvviPdGevrkikhlrvffvt.aawsvfayvwlylilavfspGvvevweglltllffPltvllayvad 250
                 +++ +v l+y+flG++i+ d  f+ ++e+i+ k  e                +  + v+  tlma G saPe++ s+i      f+  d+G stivGsa fn++ +ia+c +  P     k   l + +   a    f  + l  ++ +++ G +e+we++l +l++ l v++ y + 
  MMETSP1174-20130828|7410_1 111 VFLSIVGLLYMFLGIAIVCDEiFVPALEIISEK-WE----------------L-SNDVAGATLMAAGGSAPELFTSLIA----SFDRSDMGFSTIVGSAVFNVLFVIAMCALCTPM----KFCPLALTWWPlARDCTFYILTLITLVVFMADGKIELWEAILQFLMYVLYVIIMYYSS 262
                 56678999**********996488899988533.22................2.3458999****************95....7999****************************7....44555554444044444444445455566789********************999764 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 1.1e-10
   TIGR00845 725 vmhfltvfwkvlfafvP....PtdylgGwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiyhaaqGekfkvepGtlafsvtlftvfaliaivvlllrrrkeiGgelGGPrtaklltsallvllwllyvllasleaych 917
                 ++ +++++  ++f +vP    P      +a+f  si+ i  l+ ++   as  G   ++   +  v+ +a GtsvPd ++s + a q +  d ++    Gsn  +v +Gi + w + +i+   +  ++     +  + v  f    ++ +vv+++          GG ++++ l  +++v l++ y+ +a l+ yc+
  MMETSP1174-20130828|7410_1 570 ISFIISLPLLLVFCLVPdcraPGRENWCFASFFGSIVCIAGLSWVMVYFASGIGDFFEIPTFIMGVTVLAAGTSVPDLLSSVIVARQGH-GDMAVSSSIGSNIFDVTVGIPLPWILFSIFAGINDCTYGPTVDKDDLLVPTFILLLMVFLVVVII--------AAGGWKMTHSLGYVMFV-LYFGYLSFALLNEYCF 756
                 566677777788888873333344445799*****************************************************999875.79*****************************9999999654444444555555555554444443........35999999999999999.999***********97 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   5.4   1.9e-11   1.9e-08     230     371 ..     115     258 ..     106     259 .. 0.88
   2 !    7.1   4.7   0.00042      0.43     228     323 ..     596     692 ..     590     747 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.9e-11
   TIGR00846 230 ailLvvativv.allaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLnleal..elvalvlsvlltaitlqdGrsnyleGavlLalyviialaf 371
                 ++ L+ + + + +++ e+ v +le ++e++ ls+ + g +l++  g a+E  t++i+ + ++ d+    ++GSa+   l+v+ +++l++ +   +l+L+  +l  +    +l+++   + + dG+ +  e +  + +yv++++ +
  MMETSP1174-20130828|7410_1 115 IVGLLYMFLGIaIVCDEIFVPALEIISEKWELSNDVAGATLMAAGGSAPELFTSLIASF-DRSDMGFSTIVGSAVFNVLFVIAMCALCTPMKFCPLALTWWPLarDCTFYILTLITLVVFMADGKIELWEAILQFLMYVLYVIIM 258
                 4555555555515677899*************************************998.799***********************************9987622677789999999999********************99875 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00042
   TIGR00846 228 saailLvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvpl.vvlvawilgie 323
                 + ++  ++ ++ +a l+ ++v+    + + + ++  ++g+++++     ++ +++viva + + d+a+   +GS +   ++ +pl ++l +++ gi+
  MMETSP1174-20130828|7410_1 596 WCFASFFGSIVCIAGLSWVMVYFASGIGDFFEIPTFIMGVTVLAAGTSVPDLLSSVIVARQGHGDMAVSSSIGSNIFDVTVGIPLpWILFSIFAGIN 692
                 667888999***************************************************************************9778888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.19s 00:00:00.85 Elapsed: 00:00:01.04
# Mc/sec: 967.07
//
Query:       MMETSP1174-20130828|7411_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|7417_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|7415_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 939.45
//
Query:       MMETSP1174-20130828|7416_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-07   24.9  99.8     0.0003   16.5   7.1    3.1  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00012   17.8  16.2    0.00012   17.8  11.2    3.1  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8  34.1   1.5e-05     0.031     684     932 ..      27     278 ..       6     303 .. 0.54
   2 !   12.2  37.9   2.7e-06    0.0056     682     973 ..     102     392 ..      91     407 .. 0.89
   3 !   16.5   7.1   1.4e-07    0.0003     677     825 ..     525     673 ..     513     684 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.5e-05
   TIGR02168 684 leeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekele.......eleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelr 932
                 +++  ++l e+i++ ++++++++k +e+ +++ +++++++  + rkl+  ++ + +  +e+e++++ ++ + ++ +       ele e+++l+eel +  +++++a +e+e+ ++ +++ ++ ++ +re l +l++ ++el+e+  + +++ ++l+ke++a++ +++ + + + +++e ++  ++e++el+e+++++e+el+e  +e +++++ +a + ++++ +++e      k+++lere++++++  +  +l+
  MMETSP1174-20130828|7416_1  27 VTRAGDKLREEIKKFTDKITTTNKIFEQHTNKKAQVDEAKFAAARKLELYDTTMGSRISEEEAMQRSYQLQISKEHelktqrlELELEKKSLQEELRHCGDAMNTATAELEQRRRLLAKKQRIAEGTREILPALKSTVQELEETQLQYQTENKRLRKELEAKKAHVQVAMAHLLNNKELQAGRKEELQELDESITNQEAELTEYAAEDRRQNKMIAMVTAQRDMMAREAA----KASRLEREARQTKKLRELTKLD 278
                 44444555555555555555555555555555555556666556666555555555555555555555555455550000000555555555555555555555555555555555555555555566666666666666666666666666666666666666666666666677777777777777777777777777777666666555555555555333333333....3334444444444444444444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.7e-06
   TIGR02168 682 eeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeae 973
                  el+++  ele + ++l++el    ++ ++++ ele+ r+ l +++r  + +++ l +l+++v++lee+  q + e+++l++e e+++++++ a ++l + +e ++  ++e+++l e++++++++l+e  ae +++++ +a ++ +++++ +e+a++++  +e++++++ +e +  +l++ ++++++ l+e+++  + ++ke++   + +++  ++l+e++e+l+ l+++v+ l +e ++++ +l ++ ++ + ++ ++++l+ ++++ ++l   e  + +++   e ++++
  MMETSP1174-20130828|7416_1 102 HELKTQRLELELEKKSLQEELRHCGDAMNTATAELEQRRRLLAKKQRIAEGTREILPALKSTVQELEETQLQYQTENKRLRKELEAKKAHVQVAMAHLLNNKELQAGRKEELQELDESITNQEAELTEYAAEDRRQNKMIAMVTAQRDMMAREAAKASRLEREARQTKKLRELTKLDLTKGFNDTNRHLTEFSSLYDVVKKERNGYVNLIQNSVQALAEMKEKLKILNNEVEILLNESQAKDRSLVKAIAAHSLAKSQRDQLRMEMNKTQQLYRTEQLSVKQQ-IGEVKSLN 392
                 56777778888889999999************************9999999******************************************************************************************999998888888888888878888888888888899*************************************************************************************999999999887777766663.33344444 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.4e-07
   TIGR02168 677 rkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaeke 825
                 ++ e+++le+++  le++++e++ ++ e e  lee+++ ++klr+++++ +++  +l k+l++++++++ ++++l  + +el+  ++  ++l++e e +e+el  ae ++ ++    +++++e+    ++  +++++ ++ ++ + ++ 
  MMETSP1174-20130828|7416_1 525 EDPELDQLEAKMSVLEARLEEKKVNIIEKELVLEEITTLTTKLRNRAHSGRDDALALTKRLNSFQNKIRDVTRKLMATVSELSMSQAMSMKLQKEHEAKEAELRDAEWRVSQNAPPTDDAEREWHRGVTNKMSTRRKTNNKDAPIGKAV 673
                 5679999*****************************************************************************99999999999999999999999999999999999999999988888888888777766666555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9  25.8   0.00011      0.22     282     501 ..      20     235 ..       4     240 .. 0.85
   2 !    3.0  25.7    0.0016       3.3     190     453 ..     237     512 ..     233     518 .. 0.72
   3 !   17.8  11.2   5.7e-08   0.00012     196     390 ..     484     678 ..     481     683 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00011
   TIGR02169 282 ieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqak 501
                 i+k+ge    +v++   +l+ ei+k  ++i   ++  e+  +++a+ ++   + ++++e  ++ + +   e e+++  ++ +  +++el+ +  e++ e + l+eel +   +++ ++ el++ +r l +++  ++ ++e l  lk  ++++ee + + ++e + l++e+++++ +++ + ++l + ++    +keel++l++ ++++e el e  a+ +
  MMETSP1174-20130828|7416_1  20 ISKQGE----TVTRAGDKLREEIKKFTDKITTTNKIFEQHTNKKAQVDEAKFAAARKLELYDTTMGSRISEEEAMQRSYQLQISKEHELKTQRLELELEKKSLQEELRHCGDAMNTATAELEQRRRLLAKKQRIAEGTREILPALKSTVQELEETQLQYQTENKRLRKELEAKKAHVQVAMAHLLNNKELQAGRKEELQELDESITNQEAELTEYAAEDR 235
                 444433....466666788899999999999999999999999999999999999999999999999999999999999999988888888888999999999999999999999999999999977777777777777778888999999999999999999999999999999999999999999999999999999999999999999999888765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0016
   TIGR02169 190 velvieevrqqlerLekerekaerYke...Lkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleel......kaeiekleraiaekee.......eledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikk 453
                  + +i+ v  q++ +++e +ka r +      k++rel    l k  +++++ + + ++  + +++e ++  + i++  + l+e+++kl+ ln+++e l +e q++ ++ ++ +      k+++ +l+ ++++ ++        +++   +++ ++  i++l++++  ++++ ee   +r+     l ++++el  l ++++  ++++a+  +e+ +++++l +lk +l e++    r +   ++   +lae+k+++  + +++ e +e+ e+l ++++ 
  MMETSP1174-20130828|7416_1 237 QNKMIAMVTAQRDMMAREAAKASRLERearQTKKLRELTKLDLTKGFNDTNRHLTEFSSLYDVVKKERNGYVNLIQNSVQALAEMKEKLKILNNEVEILLNESQAKDRSLVKAIaahslaKSQRDQLRMEMNKTQQlyrteqlSVKQQIGEVKSLNLIINSLERDMLRMKQKYEEGVEQRNVAGITLIDRNDELCILYEKANTQEATFARGEREVVQREQELRMLKIRLAEIE----RQQVITRKELPQLAEVKEKIGTLGAALSEEKETSEQLSAKLED 512
                 56789999999999999999998876411145677888888999999*************************************************998888877655544443111111334444444444333311000003333333334444456666666666666667767777777778999*******************************************9....4444556666778888888888888888888888888887765 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 5.7e-08
   TIGR02169 196 evrqqlerLeke.rekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelke 390
                 ev++++ +L     e++e  ++L++++++   +++ ++l   + ++ ++e++++ le+ le+ +++i e+e  leei     +l ++ ++ g +++la++++l++++ +i+ + r++ +  +el  +++ + k+++e +++++e+++ e ++ +++   +  + e +   ++ +  r++ +++d+   +++  +++
  MMETSP1174-20130828|7416_1 484 EVKEKIGTLGAAlSEEKETSEQLSAKLEDPSNKERWRALGGEDPELDQLEAKMSVLEARLEEKKVNIIEKELVLEEITTLTTKLRNRAHS-GRDDALALTKRLNSFQNKIRDVTRKLMATVSELSMSQAMSMKLQKEHEAKEAELRDAEWRVSQNAPPTDDAEREWHRGVTNKMSTRRKTNNKDAPIGKAVSTTAD 678
                 5555555553321345555668*****************************************************************988.****************************************************************99999999999999999988888888888877777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       486  (0.118479); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.18s 00:00:01.10 Elapsed: 00:00:00.84
# Mc/sec: 1137.62
//
Query:       MMETSP1174-20130828|7425_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.4   0.1      0.029   11.7   0.1    1.2  1  TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00227  ribD_Cterm: riboflavin-specific deaminase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.1e-06     0.029      14      50 ..      67     103 ..      63     105 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.1e-06
   TIGR00227  14 DgkiatasgesswisseearrdvhklRaesdailvgs 50 
                 Dgk+a  +++++ i  +e  ++v ++R++++ +++g+
  MMETSP1174-20130828|7425_1  67 DGKVAAPKKRRNSIGAPERANEVRRVRQKHQDLVTGV 103
                 9******************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 801.04
//
Query:       MMETSP1174-20130828|7427_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 779.16
//
Query:       MMETSP1174-20130828|7429_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 943.72
//
Query:       MMETSP1174-20130828|7431_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-46  156.5   0.0    1.6e-46  156.4   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
    3.2e-45  152.6   0.0    3.8e-45  152.3   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.0   7.7e-50   1.6e-46     320     506 ..       2     189 ..       1     191 [] 0.95

  Alignments for each domain:
  == domain 1    score: 156.4 bits;  conditional E-value: 7.7e-50
   TIGR01967 320 eeqqrvfqphsg..rrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrP..eftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqev 506
                 +eq + f+p     r++++atn+aets+t+ g+++vid G  r+    + t   rl   p+s+asa qr Gr Gr a+G c rly ee f+s    e+t Pe+ rt+l+  +l ++al++ di +f f+ +P ++ + + l++l  l++l+e+     lt++Gr la++Pv+P +a+ ll +  lgc +e+
  MMETSP1174-20130828|7431_1   2 REQMQAFEPARRgvRKVIFATNIAETSITIDGVHFVIDGGFVRLPYLDVSTGTERLVTSPVSRASARQRAGRAGRTAPGKCFRLYTEEVFRSPTfyEYTMPEMQRTSLTGAVLMLKALGIDDILHFDFLSPPAPEVLMQALEVLFSLGGLDEEC---GLTQVGRRLAEFPVEPLMAKALLVSLELGCAEEL 189
                 699999999653349***************************************************************************99643389****************************************************9998...9*****************************9997 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   1.8e-48   3.8e-45     251     428 ..       2     182 ..       1     190 [. 0.93

  Alignments for each domain:
  == domain 1    score: 152.3 bits;  conditional E-value: 1.8e-48
   TIGR01970 251 eaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaer..laaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsaks 428
                  +q +a +pa +G rkv+ atniaets+ti+Gv  viD g+ r +  d ++G  rL t  +s+asa qraGraGr++pG c+rL++ee  ++    + + pe+ ++ L+g +l l + G +   ++ fl  P    l++a e+L  lg ld e  lt+ G++lae +veP +a+ ll + +
  MMETSP1174-20130828|7431_1   2 REQMQAFEPARRGVRKVIFATNIAETSITIDGVHFVIDGGFVRLPYLDVSTGTERLVTSPVSRASARQRAGRAGRTAPGKCFRLYTEEVFRSptFYEYTMPEMQRTSLTGAVLMLKALGIDdILHFDFLSPPAPEVLMQALEVLFSLGGLDEECGLTQVGRRLAEFPVEPLMAKALLVSLE 182
                 589************************************************************************************9877611456789*********************999999**9999999*************************************98887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 869.31
//
Query:       MMETSP1174-20130828|7430_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|7436_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 671.18
//
Query:       MMETSP1174-20130828|7435_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1400.23
//
Query:       MMETSP1174-20130828|7437_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1064.43
//
Query:       MMETSP1174-20130828|7442_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   12.9   5.7     0.0064   12.8   3.9    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
     0.0072   12.9   6.6     0.0083   12.7   4.6    1.0  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
  ------ inclusion threshold ------
      0.037   11.8   4.6      0.033   12.0   3.2    1.0  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.23    9.6  11.3       0.23    9.6   7.8    1.1  1  TIGR00621 ssb: single-stranded DNA-binding protein
        1.2    7.0  11.3        1.2    7.0   7.8    1.1  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   3.9   7.8e-06    0.0064     276     351 ..       5      87 ..       2      91 .] 0.40

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.8e-06
   TIGR02442 276 vlaraaralAAldgrrevteedv..reaaeLvlkh.Rrr.....rkpfeeeqekeekkleekkeeakpdeekedeseekekees 351
                 +  r+ +a A ++gr+++te d    + a Lv++  R       r+p  + +++++++++++++++++++++++ + +++++++
  MMETSP1174-20130828|7442_1   5 IRLRVVEAPAVVQGRTRITEPDGgdDDDALLVVSGvRGDavgrkRSPATSGEQQQHPQPQQHQQQQPQQQQQQQPQ-QQQQQQQ 87 
                 6678888999999999999987522334555554313221111133333322222222222222222222222222.1121111 PP

>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   4.6     1e-05    0.0083     236     314 ..       4      88 ..       2      91 .] 0.60

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
   TIGR02031 236 lfavraAkalaAlegReeVeeeD...lklAvelvllpRatrl.eekepeqee.ppppPpPpepe.segeeeedeeeeeeeekeee 314
                 l  +r+  a a ++gR++++e D      A  +v   R     ++++p  +  +++ P P++++ ++++++++++++++++++++
  MMETSP1174-20130828|7442_1   4 LIRLRVVEAPAVVQGRTRITEPDggdDDDALLVVSGVRGDAVgRKRSPATSGeQQQHPQPQQHQqQQPQQQQQQQPQQQQQQQQQ 88 
                 77889999***********986511135566666556643331334444333377777777443366777777777766665554 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.2     4e-05     0.033      64     101 ..      50      88 ..       5      91 .] 0.46

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4e-05
   TIGR03499  64 eeakkaleeaepkklska.eekeekekeaeekaaeaaqe 101
                  +a + ++++ p++++++ ++++++++++ +++++++q+
  MMETSP1174-20130828|7442_1  50 SPATSGEQQQHPQPQQHQqQQPQQQQQQQPQQQQQQQQQ 88 
                 222222222222222222022222222222222222222 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.8   0.00028      0.23     112     155 ..      50      87 ..      19      91 .] 0.49

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00028
   TIGR00621 112 akaqggekelneesgesqqqapqesqqeaqatgkekassapqkq 155
                 + a  ge++++ + +++qqq+pq++qq++ ++      +++q+q
  MMETSP1174-20130828|7442_1  50 SPATSGEQQQHPQPQQHQQQQPQQQQQQQPQQ------QQQQQQ 87 
                 33333333333333333444444422222111......111111 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.8    0.0014       1.2      73     122 ..      54      88 ..      22      91 .] 0.49

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0014
   TIGR02205  73 qpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqt 122
                 + ++q++p++ + + +               qp+qqq ++pq+++++qq+
  MMETSP1174-20130828|7442_1  54 SGEQQQHPQPQQHQQQ---------------QPQQQQQQQPQQQQQQQQQ 88 
                 2222222222222222...............3333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|7443_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-24   82.5   0.0    5.6e-24   82.0   0.0    1.2  1  TIGR00090 iojap_ybeB: iojap-like ribosome-associated protein


Domain annotation for each model (and alignments):
>> TIGR00090  iojap_ybeB: iojap-like ribosome-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.4e-27   5.6e-24       2      99 .]      86     182 ..      85     182 .. 0.97

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.4e-27
   TIGR00090   2 lelivealedkkaedivvldvrekssiadyfviasgeserqvkaladeveeelkekglkplrvegkeegeWvlvDlgdvvvhifqeeaRefYdLEklw 99 
                 ++ i++a +++kae i +l v+++++++++fv + g+s+ q +a+a ++++++ke g ++ r++g+ ++ W+l+D+gdv+v+++++ +Re+Y+LE++w
  MMETSP1174-20130828|7443_1  86 VHAIAKAGDKRKAEGILALRVSHLTYTTEFFVNMMGNSRPQNNAIAASIQDDMKELGRSC-RIDGNADSGWILLDYGDVIVNVMTPRSREYYRLEEFW 182
                 57899999**********************************************999775.9************************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 842.40
//
Query:       MMETSP1174-20130828|7448_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1174-20130828|7449_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 955.78
//
Query:       MMETSP1174-20130828|7447_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|7440_1  [L=2075]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2075 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.16u 0.17s 00:00:01.32 Elapsed: 00:00:00.82
# Mc/sec: 3339.97
//
Query:       MMETSP1174-20130828|7451_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 113.43
//
Query:       MMETSP1174-20130828|7446_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-42  141.1   0.1    6.5e-42  140.8   0.0    1.1  1  TIGR01038 L22_arch: ribosomal protein L22
    3.7e-08   31.4   0.0    5.7e-08   30.8   0.0    1.3  1  TIGR01044 rplV_bact: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR01038  L22_arch: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.0   3.2e-45   6.5e-42      36     146 ..       1     115 [.       1     117 [. 0.94

  Alignments for each domain:
  == domain 1    score: 140.8 bits;  conditional E-value: 3.2e-45
   TIGR01038  36 mkleeAkkyLedviekkravpfrRynkkvghrrgllgwt....agRyPvkaakailklLknaeanAeakgLdvekLkiiHiqankgpvlrrympRAfGRatprnsstthielvve 146
                 m+l+ Ak++Ledv+++k+avpf ++++ +g++++l+ ++    +gR+P+ka k+il lLknaeanAe kgLdv+ L+++H+q n+++++rr+++RA+GR++p++s+++hielv+e
  MMETSP1174-20130828|7446_1   1 MSLSRAKQFLEDVLQMKQAVPFTKFTGGIGRHAQLKQFKapgsKGRWPQKASKIILDLLKNAEANAEFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELVLE 115
                 7899*******************************776422338*********************************************************************98 PP

>> TIGR01044  rplV_bact: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.8e-11   5.7e-08      36     102 ..      48     113 ..      43     114 .. 0.94

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 2.8e-11
   TIGR01044  36 pkkaaelvekvlksaianaehnneldadelvvakvfvdeGPtlkrirprakGrasrirkrtshitvv 102
                 p+ka++++   lk a ana + ++ld+d+l v+++  ++    +r + ra+Gr +    + +hi +v
  MMETSP1174-20130828|7446_1  48 PQKASKIILDLLKNAEANA-EFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELV 113
                 89*****************.5689*******************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 468.25
//
Query:       MMETSP1174-20130828|7455_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-32  110.7   0.0      2e-32  110.3   0.0    1.1  1  TIGR00376 TIGR00376: putative DNA helicase
  ------ inclusion threshold ------
      0.035   10.0   0.0      0.041    9.7   0.0    1.0  1  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
      0.035    9.7   0.0      0.042    9.4   0.0    1.1  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   1.5e-35     2e-32     531     632 ..       6     104 ..       3     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 110.3 bits;  conditional E-value: 1.5e-35
   TIGR00376 531 eigvisPYdaqvdllrklleekkidiEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkkkge 632
                  +gvi+PY +q  ll+ ++  + + +E+++vDGFqGRE +vii+s vRs+  g +GFLkdlRR+nvaltRar  l v+g +  l++nk ++ l+e +k  g 
  MMETSP1174-20130828|7455_1   6 RVGVITPYADQLALLKSMF--RGMPVELNTVDGFQGREMDVIIVSTVRSEG-GGIGFLKDLRRMNVALTRARHGLYVVGSEYALSSNKHWRLLTENAKVTGC 104
                 58**************554..6788************************98.99****************************************99987765 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     3e-05     0.041     793     856 ..      62     127 ..      59     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3e-05
   TIGR00609 793 dlrllYVAlTRAkkqlviglaelvkskskelaklllhksalg..ylkqdgetdeitglkqklakla 856
                 dlr + VAlTRA++ l+++ +e   s +k+ + l ++ +  g    +  +++ +++ l+q+l++++
  MMETSP1174-20130828|7455_1  62 DLRRMNVALTRARHGLYVVGSEYALSSNKHWRLLTENAKVTGcfVSVFREARISSDLLQQCLEESQ 127
                 89*****************99988888888765555555555654555667778888999998877 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0     3e-05     0.042     859     890 ..      62      92 ..      59     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3e-05
   TIGR02785 859 emRvlYVAlTRAkekLiLvgsvkdekkevkkw 890
                 ++R + VAlTRA++ L+ vgs    +++ k+w
  MMETSP1174-20130828|7455_1  62 DLRRMNVALTRARHGLYVVGSEYALSSN-KHW 92 
                 6899****************96554433.334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 997.84
//
Query:       MMETSP1174-20130828|7458_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    8.2   7.4       0.26    8.1   5.1    1.0  1  TIGR02585 cas_Cst2_DevR: CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP


Domain annotation for each model (and alignments):
>> TIGR02585  cas_Cst2_DevR: CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.1   6.3e-05      0.26     243     320 ..      18      94 ..       4      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 6.3e-05
   TIGR02585 243 ldelkveeeieegevkldvellvtaledfsekvekeveigllkgfveeneeeieelkfdggvlsivvifekvkkevek 320
                 l +++ ee ++e +  ++++  ++ le++ + +++e +++++ +++ee eee+ee +    ++s  +  e++  ev++
  MMETSP1174-20130828|7458_1  18 LRHVTFEE-NSELKKPATTKTRLQVLEYLCDSSDEEDKVEEVLEVEEEVEEEAEEEEVTSEPESVAEKAEEPAAEVKE 94 
                 67788888.567777778888888888888888888899999999999999999999999999998888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|7456_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-08   31.5   0.2    4.2e-08   30.0   0.0    1.8  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    5.3e-07   27.7   0.0    1.3e-06   26.4   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.24     5e+02     249     281 ..     196     228 ..     194     234 .. 0.88
   2 !   30.0   0.0     2e-11   4.2e-08      25     116 ..     330     421 ..     314     434 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.24
   TIGR02938 249 selrkkqedarlsalkallaeeeklealretls 281
                 ++lr+++e+ r++a ++ +    +le+l++ ls
  MMETSP1174-20130828|7456_1 196 AQLRERRERNRAHAKRSRIRKKFLLESLQDQLS 228
                 5899999******99999999999999998876 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 2e-11
   TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvt 116
                  i+ya + f ++tGy +e viG+n   l   +t p++   + + + +    +  lln + dg+ +  ++ va + + +G+ + ++G+  +v 
  MMETSP1174-20130828|7456_1 330 PIVYASEGFLKLTGYQREAVIGRNCRFLQGPRTDPKMIDMIRKGVMDGTDTSVCLLNYKADGTPFWNQFFVAALRDSSGKIVNHVGVQCEVN 421
                 499***********************************************************************************988876 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.3e-10   1.3e-06      26     112 ..     330     416 ..     325     423 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 6.3e-10
   TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                  i+y+++ f +++GY++e +iGrn + l  +    ++  +i++  + g+  +     ++ ++dG+ +w +  v+ +rd +g+++  vg+
  MMETSP1174-20130828|7456_1 330 PIVYASEGFLKLTGYQREAVIGRNCRFLQGPRTDPKMIDMIRKGVMdGT-DTSVCLLNY-KADGTPFWNQFFVAALRDsSGKIVNHVGV 416
                 69*************************9988888888889999888454.777777777.******************88888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1528.29
//
Query:       MMETSP1174-20130828|7461_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1067.56
//
Query:       MMETSP1174-20130828|7460_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1406.73
//
Query:       MMETSP1174-20130828|7464_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|7465_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1083.91
//
Query:       MMETSP1174-20130828|7466_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.0   0.0      0.035   11.2   0.0    2.3  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   8.5e-06     0.035      62     110 ..      95     143 ..      65     199 .. 0.71
   2 ?   -2.8   0.0      0.16   6.6e+02     128     139 ..     204     215 ..     203     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-06
   TIGR01934  62 e.akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdav 110
                 + +++t+ D ++e ++ ak+ +    ++ v+ ++ada +Lpf++ sfdav
  MMETSP1174-20130828|7466_1  95 GyKSLTAFDYAPEGVQCAKRLLGPD-RSGVSLLVADARDLPFASGSFDAV 143
                 2488899999999999988776544.568******************987 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.16
   TIGR01934 128 elaRVlkpggrl 139
                 +++RVl+ gg +
  MMETSP1174-20130828|7466_1 204 DVWRVLRDGGVF 215
                 589******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1021.85
//
Query:       MMETSP1174-20130828|7467_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|7475_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.5   0.8       0.86    7.6   0.0    2.1  2  TIGR00637 ModE_repress: ModE molybdate transport repressor domain


Domain annotation for each model (and alignments):
>> TIGR00637  ModE_repress: ModE molybdate transport repressor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00021      0.86      27      58 ..       1      31 [.       1      40 [. 0.80
   2 ?    4.0   0.1    0.0027        11      34      63 ..      64      95 ..      50      96 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00021
   TIGR00637 27 glsYksawdaikalnellekplveaakGGkgG 58
                g+ Y+ + d+++ l+ + e+ +v ++ GG   
  MMETSP1174-20130828|7475_1  1 GMGYHVVHDKVRWLEVIDEE-VVVQQCGGVHP 31
                799***********987777.66667777554 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0027
   TIGR00637 34 wdaikalnellekplvea..akGGkgGGgavl 63
                 + +++++el++ ++  +  + GG++ G a+l
  MMETSP1174-20130828|7475_1 64 QERMQRMEELVALNVSRTmeRGGGRSIGRARL 95
                567899****9999976522457888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|7474_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1723.62
//
Query:       MMETSP1174-20130828|7478_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-21   72.2   0.0    9.8e-21   71.9   0.0    1.1  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    2.2e-10   38.0   0.0      3e-10   37.6   0.0    1.1  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family
    3.6e-10   37.1   0.0    5.3e-10   36.6   0.0    1.2  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
    4.1e-10   37.1   0.0    5.9e-10   36.5   0.0    1.1  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    5.2e-10   36.8   0.0      7e-10   36.3   0.0    1.1  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
      9e-06   21.9   0.0    1.3e-05   21.3   0.0    1.2  1  TIGR02470 sucr_synth: sucrose synthase
    9.7e-05   19.2   0.0    0.00014   18.7   0.0    1.3  1  TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
    0.00041   16.9   0.0    0.00091   15.8   0.0    1.5  2  TIGR02095 glgA: glycogen/starch synthases, ADP-glucose type
    0.00052   16.8   0.0    0.00087   16.0   0.0    1.3  1  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
     0.0033   13.1   0.0     0.0042   12.7   0.0    1.1  1  TIGR02468 sucrsPsyn_pln: sucrose phosphate synthase
     0.0069   13.1   0.0      0.012   12.4   0.0    1.3  1  TIGR04005 wcaL: colanic acid biosynthesis glycosyltransferase WcaL


Domain annotation for each model (and alignments):
>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   2.6e-23   9.8e-21     164     396 ..      66     300 ..      57     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 2.6e-23
   TIGR03449 164 eadrlivntdeeaedlvelydadpdrvdvvaPGvdlelfrPgdraaerarlGlpldekvvafvGriqplkaPdvllravaell.erdPe..selrvlvvGGpsGsglae...pealvelaeelGiakrvrflpPrpkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarvGGlpvavadGetGllvdGhdpaayadaleklldddelrarlgaaavehaa.kfsWeataeal 396
                  ad+++vn++     + + + + +   +v+ P +dl+ f+  d +     +G+ +  ++     r  + k   + + a + l  + +Pe  ++l+++++GG     +++   +++l+ la+e+ +++ v f+p  + ++  ++ ++a  v+    +e fG+v +ea  +G+Pv+a++ GG   +v+dGetG+l   ++paa++d++  l  d++ + +lg+ a eh + +f+ e  a+ l
  MMETSP1174-20130828|7478_1  66 CADVIVVNSNFTRGIFRQAFPSLKVDPAVIYPVADLQSFTLPDWSLRTGAIGIGPFVSL----NRFERKKNIGLAIEALSLLKaQVNPEtaQQLQLIIAGGYDINVTENveyLQELKALAKEFLVEDLVSFRPSISDSDRDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLR-ENTPAAFSDVMLGLALDPQNSCALGRVAHEHIKeHFGPERFADIL 300
                 57777777766655555666666777789**************9999999**9987665....56678888888888887764134777779*********876655550005667779*******************************9999*************************************996.579****************************75257777666665 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   8.1e-13     3e-10     135     375 ..      57     292 ..      45     304 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 8.1e-13
   TIGR02149 135 swvektaveaadrviavsgamredilkvypdldeekvevvynGidlkeykkaaddegtkvl.drlgidrsrplvlfvGritrqkGvvhllkavkllskdv......qvvl.cagapdtPevaeevk..qavakldre..regvvwieemlekeelvellsaaevfvcPsvyePlGivnleamacetpvvasavGGipevvvdgetGvlveiddddadkfeadlakaidklladpelakklGeaGrkraeeefs 375
                  wve+ +   ad ++  s+ +r    +++p+l+ +   v+y   dl++++ +     ++ +   +gi +     + + r  r+k +   ++a+ ll+ +v      q+ l  ag  d  +v+e+v+  q ++ l++e   e++v  +  ++ ++   ll++a   +     e +Giv +eam  + pv+a + GG  e v dgetG+l e       +f +     +  l  dp+ +  lG+  ++ ++e f+
  MMETSP1174-20130828|7478_1  57 DWVEEMTTGCADVIVVNSNFTRGIFRQAFPSLKVDP-AVIYPVADLQSFTLP----DWSLRtGAIGIGPF----VSLNRFERKKNIGLAIEALSLLKAQVnpetaqQLQLiIAGGYDI-NVTENVEylQELKALAKEflVEDLVSFRPSISDSDRDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRENTP---AAFSD----VMLGLALDPQNSCALGRVAHEHIKEHFG 292
                 6***********9999899999888999****9986.699*********993....34433034666654....6789********99999999887665333333555514666664.56665552245666666522478888999999999999*9999999999999*************************************76554...33333....3334444566666666666666666665 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.4e-12   5.3e-10     244     362 ..     177     296 ..     164     304 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.4e-12
   TIGR03999 244 aeelvkelgledrvlflGkqdev..eellslsDllllpsekesFGLaaLeamacgvpviasnvgGlpevveegetGflvevgdveemaekalklledeeklqelkkaalekakerfeseki 362
                  ++l+ke  +ed v f  ++++   ++ll+ +  ++++ e+e FG++ +eam +g pv+a + gG  e v++getGfl e    +++++  l l  d ++  +l + a e++ke+f  e++
  MMETSP1174-20130828|7478_1 177 LKALAKEFLVEDLVSFRPSISDSdrDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRENTP-AAFSDVMLGLALDPQNSCALGRVAHEHIKEHFGPERF 296
                 566777777788888877665431156888888899999***************************************98764.67999999***********************988765 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.6e-12   5.9e-10     198     362 ..     122     296 ..     119     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.6e-12
   TIGR03088 198 gtvgrleavkdqvtLvrafillvqq.kkekeerlrLvivG........dGaarealealveaaGleklvwlaGe..rtdiaellqalDvfvLpslaeGisntvLeamasglPviatavGGnaeLveegvtGklvpssdaealakalekYvsdkklikahGkaarerieqkfsleam 362
                 ++  r+e  k+    ++a+ ll+ q ++e++++l+L+i+G        + +  ++l+al+++  +e lv +      +d   llq++ +++ +  +e      +eam +g Pv+a + GG  e v++g+tG l + +   a+++ +   + d++   a G+ a e i+++f+ e+ 
  MMETSP1174-20130828|7478_1 122 VSLNRFERKKNIGLAIEALSLLKAQvNPETAQQLQLIIAGgydinvteNVEYLQELKALAKEFLVEDLVSFRPSisDSDRDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRE-NTPAAFSDVMLGLALDPQNSCALGRVAHEHIKEHFGPERF 296
                 677899999***99*****9998662678999*******9443322211223466777788888999999987611456779*************************************************9866.56789******************************98775 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.9e-12     7e-10     203     353 ..     128     285 ..     108     297 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.9e-12
   TIGR04047 203 EpRKntidlleAfallrke.rP....daqLviaGGatL..lDydaYreefearaaeleleigavvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsGvPvvaselaPfteyldeeeavvadpsdpesladal.aaaleeaarealaaagke 353
                 E +Kn    +eA++ll+++ +P    ++qL+iaGG  +   +  +Y +e++a a+e+ +e   v    ++ d++  +L+++A  + ++   E fG+v +Ea+ +G+Pv+a +    +e +++ e+ +   ++p+ ++d +   al+++++ al ++++e
  MMETSP1174-20130828|7478_1 128 ERKKNIGLAIEALSLLKAQvNPetaqQLQLIIAGGYDInvTENVEYLQELKALAKEFLVED-LVSFRPSISDSDRDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRENTPAAFSDVMlGLALDPQNSCALGRVAHE 285
                 5555544447888877754234333379*******8652278889***********99988.899999******************************************9999999999999999999999999999983456666666555555555 PP

>> TIGR02470  sucr_synth: sucrose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.5e-08   1.3e-05     654     692 ..     218     256 ..     204     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.5e-08
   TIGR02470 654 eafGltvveamtsglPtfatkfGGpleiiedgvsGfhid 692
                 e fG+  +eam +g P +a k GGple ++dg++Gf  +
  MMETSP1174-20130828|7478_1 218 EHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRE 256
                 89**********************************754 PP

>> TIGR04063  stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.6e-07   0.00014     309     377 ..     222     289 ..     129     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.6e-07
   TIGR04063 309 LkPLeamaqgrlvvasdvGGhreLiedgetGvLfkagdpealaealaklleereeweelraaarkfvee 377
                 + P+eam  g  v+a   GG  e ++dgetG+L + + p+a ++ +  l  + ++  +l + a+++++e
  MMETSP1174-20130828|7478_1 222 IVPIEAMYAGAPVLACKSGGPLETVRDGETGFL-RENTPAAFSDVMLGLALDPQNSCALGRVAHEHIKE 289
                 469*****************************9.56789999999988888888877887777777766 PP

>> TIGR02095  glgA: glycogen/starch synthases, ADP-glucose type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.8     3e+02     353     378 ..      51      76 ..      41      77 .. 0.78
   2 !   15.8   0.0   2.4e-06   0.00091     301     425 ..     125     264 ..     119     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.8
   TIGR02095 353 vkikydeelahriyAgaDlilvpSrf 378
                 ++ ++ + +  + ++ aD+i+v S+f
  MMETSP1174-20130828|7478_1  51 LYRGFIDWVEEMTTGCADVIVVNSNF 76 
                 5556777777888999********99 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.4e-06
   TIGR02095 301 sRLteqKGvdlllealeellekk.......vqlvvlGtGdpeleealrela........ekypekvrvkikydeelahriyAgaDlilvpSrfEPcGLtqliamrYGtvPivrktGGLaDtvedvdeeaeesatGflfee 425
                 +R++++K + l +eal  l ++        +ql++ G  d ++ e+++ l+           ++ v+++   ++     +  +a +++ + + E +G++ + am  G++ ++ k GG  +tv+d ++ + +++t   f++
  MMETSP1174-20130828|7478_1 125 NRFERKKNIGLAIEALSLLKAQVnpetaqqLQLIIAGGYDINVTENVEYLQelkalakeFLVEDLVSFRPSISDSDRDTLLQSALCVIYTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRENTPAAFSD 264
                 677777777766666655443322333444999**9988755554433333222332444468899999999999999**********************************************9877776666666654 PP

>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06   0.00087     350     393 ..     217     260 ..     193     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.3e-06
   TIGR02472 350 tePfGltlleaaacGlPivatedGGPrdiiakcknGllvdvldl 393
                  e fG+  +ea  +G P++a + GGP + +++ + G+l + + +
  MMETSP1174-20130828|7478_1 217 NEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRENTPA 260
                 589*********************************99887644 PP

>> TIGR02468  sucrsPsyn_pln: sucrose phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.1e-05    0.0042     582     620 ..     218     256 ..     210     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
   TIGR02468 582 epfGltlieaaayGlPivatknGgPvdikrvldnGllvd 620
                 e fG+  iea   G P++a k GgP++  r  + G+l +
  MMETSP1174-20130828|7478_1 218 EHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFLRE 256
                 89*************************999999998865 PP

>> TIGR04005  wcaL: colanic acid biosynthesis glycosyltransferase WcaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.1e-05     0.012     225     391 ..     121     292 ..      98     307 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-05
   TIGR04005 225 iisvarltekkglhvaieacrqlkarg...vafryrilgigpwerrlrtlieqyq..........ledvvempgfkpshevkamlddadvfllpsvtga.dgdmegipvalmeamavgipvvstvhsgipelveaeksgwlvpendaealadrlaafsridedelrpvlkrarekveadfn 391
                 ++s+ r+  kk + +aiea  +lka+     a + +++  g ++  +   +e  q          +ed+v    f+ps        d d +l  ++  +   + e   +  +eam  g pv++    g  e v  +++g+l  en   a++d +  ++ +d ++  ++ + a e+++++f 
  MMETSP1174-20130828|7478_1 121 FVSLNRFERKKNIGLAIEALSLLKAQVnpeTAQQLQLIIAGGYDINVTENVEYLQelkalakeflVEDLV---SFRPSISD----SDRDTLLQSALCVIyTPENEHFGIVPIEAMYAGAPVLACKSGGPLETVRDGETGFL-RENTPAAFSDVMLGLA-LDPQNSCALGRVAHEHIKEHFG 292
                 58999*******************9952224566666666776655555554433111100000044444...56666432....344554444444331346677788889**********99888888*********98.6899999999887765.6777777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1153.17
//
Query:       MMETSP1174-20130828|7480_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1202.99
//
Query:       MMETSP1174-20130828|7482_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1174-20130828|7481_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-23   78.5   0.0    1.1e-22   78.1   0.0    1.1  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.2e-10   38.6   0.0    2.3e-10   37.7   0.0    1.3  2  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    5.4e-08   29.6   0.0    6.9e-08   29.3   0.0    1.1  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
      2e-07   27.8   0.0    2.6e-07   27.4   0.0    1.1  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    1.1e-06   25.5   0.0    3.1e-06   24.0   0.0    1.6  2  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    2.2e-06   24.7   0.0    2.6e-06   24.5   0.0    1.1  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
      6e-06   22.9   0.0      8e-06   22.5   0.0    1.1  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    0.00013   18.9   0.0    0.00016   18.5   0.0    1.1  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    0.00013   18.5   0.0    0.00018   18.0   0.0    1.1  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
     0.0068   12.7   0.0     0.0097   12.2   0.0    1.1  1  TIGR03251 LAT_fam: L-lysine 6-transaminase


Domain annotation for each model (and alignments):
>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   2.8e-25   1.1e-22     214     335 ..      13     137 ..       7     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 2.8e-25
   TIGR00713 214 kkeflealrelteengallilDevvtGFRvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPe...GkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaeglee 335
                 +  ++++lrelt++ g+ l++De+ +GFR+   gaqe+y+v++D+v++Gk lggG+Pvg++ gr  +m r  P       y  Gt+s+ p +v    + l   ++ e+  + +++a++ a+ +++
  MMETSP1174-20130828|7481_1  13 HITWVRKLRELTNRLGVPLVFDEIYSGFRLRPRGAQEFYSVQADMVAYGKTLGGGMPVGIVCGRTHLMRRYDPDlcfRLTYLIGTFSAAPTTVGCVAEFLDWFQRPETPARYAAAADATARWIAD 137
                 557899*******************************************************************8332457************999888888888877766666666666665555 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   5.6e-13   2.3e-10     190     257 ..      14      80 ..       9      87 .. 0.91
   2 ?   -3.5   0.0       1.7   7.1e+02     341     363 ..     128     150 ..     117     155 .. 0.72

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 5.6e-13
   TIGR00707 190 keflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeeva 257
                   ++++lrel+++ +v l++DE+  G+ R     a+e+y v+ D+++ +k+lggG+P+g+v  ++++ 
  MMETSP1174-20130828|7481_1  14 ITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGGMPVGIVCGRTHLM 80 
                 56889**********************.999999**************************99887765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.7
   TIGR00707 341 leekGllvntagekvlrlvppLi 363
                 +  +   ++ + +k  rl+ppL 
  MMETSP1174-20130828|7481_1 128 ADATARWIADTNQKLQRLAPPLL 150
                 55555568889999999999997 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.7e-10   6.9e-08     215     343 ..      13     139 ..       9     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.7e-10
   TIGR00508 215 speyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsd.eeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelk 343
                 + ++++klrel+++ +v l++DEi  Gf r     a e  +v+ D+++ +K l gG +p+ +++ ++++++ +  d   + ++l   t+++ p    + ++ l+ +++ e+ ++ ++ ++++++ +++ +
  MMETSP1174-20130828|7481_1  13 HITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGG-MPVGIVCGRTHLMRRYDPDlCFRLTYL-IGTFSAAPTTVGCVAEFLDWFQRPETPARYAAAADATARWIADTN 139
                 66889***********************.677788******************777.8*********99999888844444444.459999999988889999999999999988888888877777655 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.4e-10   2.6e-07     215     306 ..      12     108 ..       7     147 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.4e-10
   TIGR00700 215 pakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapap......GglGGtyaGnPlavaaa 306
                 +   +v ++++l ++ g+ l+ de+ +Gf r     a e ++++ d+++  k+l +G+P+  v Gr++++    p        l Gt++ +P +v   
  MMETSP1174-20130828|7481_1  12 SHITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGGMPVGIVCGRTHLMRRYDPdlcfrlTYLIGTFSAAPTTVGCV 108
                 55578999*********************.6667789*********************************8665522222246788888888766554 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   7.6e-09   3.1e-06     202     279 ..      10      85 ..       6     102 .. 0.90
   2 ?   -1.8   0.0      0.52   2.1e+02     371     387 ..     137     153 ..     134     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 7.6e-09
   TIGR01885 202 vvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikp 279
                 vv++  +++k rel ++  v l+ dei  G  r     a e++ v+ d+v  Gk+l+gG+ Pv  v ++ ++m   +p
  MMETSP1174-20130828|7481_1  10 VVSHITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGGM-PVGIVCGRTHLMRRYDP 85 
                 67777899**********************8.5666679*****************9996.**********9987666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.52
   TIGR01885 371 ptheeiirlaPPlvite 387
                 +t++++ rlaPPl  ++
  MMETSP1174-20130828|7481_1 137 DTNQKLQRLAPPLLPSQ 153
                 689999*******8666 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.3e-09   2.6e-06     198     267 ..      13      81 ..       5     142 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 6.3e-09
   TIGR03246 198 dkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelak 267
                 +  ++++lrel +r +  l+fde+ +G  r+    a   y v+ d+++  k+lGgG+p+G +  +++l +
  MMETSP1174-20130828|7481_1  13 HITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGGMPVGIVCGRTHLMR 81 
                 557899*********************7.7788889999*********************9998888765 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.9e-08     8e-06     223     288 ..      11      75 ..       5     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.9e-08
   TIGR00709 223 aasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlai 288
                  + + ++rk+re+t++ ++ l++de+ +G+       a e   ++ d+v   k++GGg+p+ ++  
  MMETSP1174-20130828|7481_1  11 VSHITWVRKLRELTNRLGVPLVFDEIYSGFRLRP-RGAQEFYSVQADMVAYGKTLGGGMPVGIVCG 75 
                 46799*************************6554.4688999*******************99754 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.8e-07   0.00016     245     307 ..      15      75 ..       5     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.8e-07
   TIGR03372 245 nyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatva 307
                 +++  +r+l + +g  l++de+ +g+ r     a e ++vq d+++  k+lggg mp+g    
  MMETSP1174-20130828|7481_1  15 TWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGGG-MPVGIVCG 75 
                 567778999****************8.5666789******************99.89997654 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.5e-07   0.00018     212     276 ..      12      74 ..       8      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.5e-07
   TIGR02407 212 askeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvl 276
                 ++ +W+r+l++l+++ ++ l+ d+i +G  r     + e+ +++ d+v+  k+++G G+P+ +v 
  MMETSP1174-20130828|7481_1  12 SHITWVRKLRELTNRLGVPLVFDEIYSGF-RLRPRGAQEFYSVQADMVAYGKTLGG-GMPVGIVC 74 
                 5689************************7.666667889999**************.****9986 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.4e-05    0.0097     240     288 ..      16      63 ..       7      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.4e-05
   TIGR03251 240 flralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkk 288
                 ++r+lr+l+++  + lv+de+ +G  l  +  a + + v+ d+va+Gk 
  MMETSP1174-20130828|7481_1  16 WVRKLRELTNRLGVPLVFDEIYSGFRLRPR-GAQEFYSVQADMVAYGKT 63 
                 789**********************99865.69999***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1242.52
//
Query:       MMETSP1174-20130828|7488_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|7484_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1418.88
//
Query:       MMETSP1174-20130828|7491_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1230.71
//
Query:       MMETSP1174-20130828|7496_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|7497_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.93    8.2  13.9        2.3    6.9   2.8    2.5  2  TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM
        1.9    6.2   7.3       0.14    9.9   0.6    1.9  2  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03824  FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.6    0.0015         3      13      47 ..      75     109 ..      61     151 .. 0.62
   2 ?    6.9   2.8    0.0011       2.3       8      66 ..     177     235 ..     173     253 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
   TIGR03824  13 aalsqtksksaakansaaakaaasavesdsvslss 47 
                 ++++++k++++ ++++++ k+ +s+++s+s +ls+
  MMETSP1174-20130828|7497_1  75 NNSNSKKGNKQLQQQQSQPKQSSSSSSSSSTHLSP 109
                 22222222222222222222222222555555554 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0011
   TIGR03824   8 slaavaalsqtksksaakansaaakaaasavesdsvslssqaqqlqsleaqlasapdvd 66 
                 +++  ++ +q++++++ ++n+aa +a +s+++ +  ++++  +++++ +++  ++p++d
  MMETSP1174-20130828|7497_1 177 DPSLLTTAEQQQQQQQPDNNNAALPASSSSSSMTATTTTALPSSVAASAQEETETPPFD 235
                 55556667777777777777777777777766666666666666666666777777777 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6   6.6e-05      0.14      84     122 ..      71     107 ..      63     115 .. 0.79
   2 ?   -0.8   0.6      0.13   2.6e+02      75     107 ..     193     225 ..     178     235 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.6e-05
   TIGR03927  84 enatesntvkktkkqLFsseyeqtssssesteeeetekt 122
                 ++++++++ kk  kqL +++++ + sss+s+  ++++  
  MMETSP1174-20130828|7497_1  71 LQSNNNSNSKKGNKQLQQQQSQPKQSSSSSS--SSSTHL 107
                 57899*****************999999986..444444 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.13
   TIGR03927  75 eelkdqLfsenatesntvkktkkqLFsseyeqt 107
                  +  +     ++++s+ +++t   L ss + ++
  MMETSP1174-20130828|7497_1 193 PDNNNAALPASSSSSSMTATTTTALPSSVAASA 225
                 223333333455555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1291.61
//
Query:       MMETSP1174-20130828|7501_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|7500_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1835.07
//
Query:       MMETSP1174-20130828|7506_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-24   83.1   0.0    1.2e-23   81.9   0.0    1.6  1  TIGR01099 galU: UTP-glucose-1-phosphate uridylyltransferase
    1.1e-06   25.9   0.0     0.0087   13.0   0.0    2.2  2  TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase
    1.7e-06   25.0   0.0    0.00061   16.6   0.0    2.3  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00015   18.8   0.0     0.0016   15.5   0.1    2.1  2  TIGR01105 galF: regulatory protein GalF
      0.005   13.8   0.0      0.007   13.3   0.0    1.2  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR01099  galU: UTP-glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.4e-26   1.2e-23       2     251 ..      67     338 .]      66     338 .] 0.83

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.4e-26
   TIGR01099   2 rkaviPaaGl.GtrlLPatkaiPkemlpivd.....kPliqyvveeaveaGieeivlvtgrskraiedhfDtsyel.ea.klekknkeellkevrkiaelatilyvrqk.eakGLGhavllaeelvgdepfavllgDdlvseeee..alkqlielyektgas.iiaveevpkeevskYGvidgee..veeelyevkdlvekPkpeeapsnlai...........vGrYvltpeifelleetkaGkggeiqltDalrlllekeevlavklkgkryD 251
                 + aviP aG  G+ l Patk+i   +lpi+d     kP +  +veea     e i++v  ++ +   + f +++   e  +l   + +e+  ++ ++ ++++   v q+  ++G+ +a++   + vg +p+  llgD+++++++   + +ql+e ++  + + i++++  p +e ++YGv++g+   + +el++v+++vekP++e a s l i            G+Yvl  eif+l+e+ k  +g+   +t+ l+ + +++ +++v  +g r+D
  MMETSP1174-20130828|7506_1  67 KVAVIPCAGSsGVLLYPATKCIKAPLLPILDvdgymKPAVVKIVEEACTVVEEVILIVKPEHLEDFSNVFHRELHRhEFdNLPP-GHKEYGARLLELGKKVR--LVCQElPQRGISEALISVSREVGAQPLLLLLGDHVYHSNTGksCAAQLVEHWQGCKPKpIVGLRPTPLTELHRYGVVAGQLdgSRKELVNVSAIVEKPSNEFAMSHLRIdssdefeylslFGQYVLPCEIFDLIERSKDVHGEYANFTEVLDEMRRSHGMTGVVPDGLRFD 338
                 679******6489999*************98888889***********998888999999999999999998765314313444.44445555556666655..455552689***************************999877799********98854399****************99754489999****************98755444444443338********************************999999999888888887 PP

>> TIGR01207  rmlA: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.1e-05    0.0087       5      62 ..      73     134 ..      69     140 .. 0.76
   2 !   10.8   0.0   5.2e-05     0.042      70     172 ..     162     274 ..     150     286 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
   TIGR01207   5 laGGsGtrlypitlavskqllpvydkpmiyyplsvlml....aGirdiliistpedtprfkr 62 
                  aG sG  lyp+t+++   llp+ d      p  v ++    + + ++++i  pe+   f +
  MMETSP1174-20130828|7506_1  73 CAGSSGVLLYPATKCIKAPLLPILDVDGYMKPAVVKIVeeacTVVEEVILIVKPEHLEDFSN 134
                 69*********************998777777666654222145677888888887777765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 5.2e-05
   TIGR01207  70 fGvelsyavqespd.GlaqafiigeefidddksalvlGdnifyGkdlsellkraaakeeGat...vfayq...vkdperyGvvefdeeg...raisleekpakpksnyavtGl 172
                 +G +++   qe p+ G+++a i     +++++  l+lGd +++ +  ++   ++ ++ +G     + +     +++ +ryGvv  + +g   + +++    +kp  ++a++ l
  MMETSP1174-20130828|7506_1 162 LGKKVRLVCQELPQrGISEALISVSREVGAQPLLLLLGDHVYHSNTGKSCAAQLVEHWQGCKpkpIVGLRptpLTELHRYGVVAGQLDGsrkELVNVSAIVEKPSNEFAMSHL 274
                 667777888998854***************************98877777666666666653222555432226778899998655444111356666667777777777666 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0014       1.1       3      58 ..      69     127 ..      67     145 .. 0.74
   2 !   16.6   0.0   7.4e-07   0.00061      63     204 ..     155     329 ..     150     335 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0014
   TIGR03992   3 avilaAGk.GeRlrPltetrpKvllpvag.....kpllehliealkeagieelvlvvgyeke 58 
                 avi +AG+ G  l P t+    +llp+++     kp + +++e++ ++ +ee++l+v+   e
  MMETSP1174-20130828|7506_1  69 AVIPCAGSsGVLLYPATKCIKAPLLPILDvdgymKPAVVKIVEEACTV-VEEVILIVKP--E 127
                 899999954999***************653334477788888888777.8999999953..2 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 7.4e-07
   TIGR03992  63 yfgdksklgveveyveqe.eqlGtadAlkaakekv.ddeflvlngDvlleseeleklieaee.........aaiav..vevedpsdyGvveveeg.......kvteivEKp.........eeppsn....liNaGiYlleeeifellekvklSeRgElEltdalkalieeekvka 204
                 y  +  +lg +v++v qe  q+G ++Al +++++v  + +l+l gD +++s++ ++ +++           +++ +  +  ++ ++yGvv  + +       +v+ ivEKp         +   s+    l   G Y+l+ eif+l+e+ k  + +  ++t++l+++ +++ ++ 
  MMETSP1174-20130828|7506_1 155 YGARLLELGKKVRLVCQElPQRGISEALISVSREVgAQPLLLLLGDHVYHSNTGKSCAAQLVehwqgckpkPIVGLrpTPLTELHRYGVVAGQLDgsrkelvNVSAIVEKPsnefamshlRIDSSDefeyLSLFGQYVLPCEIFDLIERSKDVHGEYANFTEVLDEMRRSHGMTG 329
                 55566778999******94588*************6699**********887655544332223447777555554114568999*****9855557888889********5433322221112222222445799***********9877766555689999999988876655 PP

>> TIGR01105  galF: regulatory protein GalF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     2e-06    0.0016       6      57 ..      69     125 ..      64     147 .. 0.79
   2 ?    1.2   0.0     0.045        37     209     245 ..     285     321 ..     163     337 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2e-06
   TIGR01105   6 avipvagl.gmhmlpatkaipkemlpivd.....kpmiqyivdeivaagikeillvth 57 
                 avip ag  g+ + patk+i   +lpi d     kp +  iv+e  +  + e++l+ +
  MMETSP1174-20130828|7506_1  69 AVIPCAGSsGVLLYPATKCIKAPLLPILDvdgymKPAVVKIVEEACTV-VEEVILIVK 125
                 8*****95489999*************987677789999999997654.666666554 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.045
   TIGR01105 209 lmavgryvlsadiwaelertepgawgriqltdaiael 245
                 l   g+yvl ++i+  +er++       ++t+ + e+
  MMETSP1174-20130828|7506_1 285 LSLFGQYVLPCEIFDLIERSKDVHGEYANFTEVLDEM 321
                 4457999999999999999887665556666666665 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.6e-06     0.007     109     220 ..     187     314 ..     177     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.6e-06
   TIGR02091 109 eeveveyvlilsgDhiYkmdy.....ekllkkhiekkadvtvaalevprkeAsefGvlkvdeeg......riveFeEKpkkpkslkkkedks......lasmGiYiFkkevLkelleedakeeesseDf 220
                 +ev ++ +l+l gDh+Y+ +      ++l+++    k +  v+  + p +e +++Gv++ + +g      ++ + +EKp+++ ++++ + +s      l+ +G Y+   e+ ++l+e++++ + +  +f
  MMETSP1174-20130828|7506_1 187 REVGAQPLLLLLGDHVYHSNTgkscaAQLVEHWQGCKPKPIVGLRPTPLTELHRYGVVAGQLDGsrkelvNVSAIVEKPSNEFAMSHLRIDSsdefeyLSLFGQYVLPCEI-FDLIERSKDVHGEYANF 314
                 456678899********9986322225788888889999*******************75433211222278899**********99999988999999999****99875.57777766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 969.83
//
Query:       MMETSP1174-20130828|7504_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-128  426.8  21.6     2e-128  426.6  15.0    1.0  1  TIGR00836 amt: ammonium transporter
    5.8e-80  266.9  19.6    2.9e-79  264.5  13.6    1.8  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.6  15.0  9.9e-132    2e-128       1     402 [.       6     428 ..       6     431 .. 0.94

  Alignments for each domain:
  == domain 1    score: 426.6 bits;  conditional E-value: 9.9e-132
   TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafg.eeaetvngfiGtskfglkn..kvlk.esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.......klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang...laalaavnTtlaaaagaltallieylkegkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss..llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehg 402
                 d+++ll+a ++Vf+mq G+alLeaG++r++nv nil+kn+ld +++ ++++++Gy++a+g  ++   n fiG ++f+l+   + ++  s+ e+  ++ +f+fq++Faa++a+i+sgavaeR++++ay+l+s+ + ++vyp+v hwvw+ +G+l++       ++g +DFAGs+vVH++g+va+++a +vl+pR +r      ++ ++  hn  l vlGt++LwfGW+gFN+GS+l  +a g   +a  +a +Ttl+aaag++t ++i  +k+g +++  ++ng+l+glv+ita+++vve+waa+viG+v+ ++v+ a +++ +klk+DDp++v++vHg++G+wG+i+vglfa+ k++++++   ++  ++ g++k l+ q++ + +il+++++  l+++++l+k+   Rv +e+E++GlD++eh 
  MMETSP1174-20130828|7504_1   6 DAFYLLFAGTVVFFMQSGFALLEAGSLRHRNVQNILFKNILDPCFGAMAFWSFGYGFAYGtYKQYGTNTFIGGQYFFLDTfsD-AStASDFETEDSYHSFFFQFAFAATTATIISGAVAERCRVEAYFLYSTYICMFVYPVVVHWVWSSEGFLSAfnsepmnDIGCVDFAGSGVVHMCGAVAAFCASYVLKPRLNRWlengeDNPEMVAHNPVLFVLGTMILWFGWYGFNPGSTLgiTASGyahVALKTATTTTLSAAAGGVTNVFIFKYKKGIWDLGETCNGVLSGLVGITAACSVVETWAAVVIGFVS-AFVYTAGQAILRKLKVDDPVNVIPVHGFCGAWGVIAVGLFASRKMMKTTYGLSEAglFYSGEFKMLGLQCLEVFIILLWTAGSSLPFFFLLDKMNVFRVPQEAEEAGLDVSEHT 428
                 89**********************************************************74456799************743.33467778888999**************************************************99999988999999**********************************9999988899*****************************88555566699999*************************************************************.666777778999********************************9966655544489999****************************************************95 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5  13.6   1.4e-82   2.9e-79       3     396 ..       5     427 ..       3     433 .. 0.87

  Alignments for each domain:
  == domain 1    score: 264.5 bits;  conditional E-value: 1.4e-82
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgda.lllegil..eafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll........selgfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevka.ipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllfgkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvpltn....................adasfvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlael 396
                  d+f++l +g +v++m +Gfa+leaG +r +n+ +il kn+   +  a+ ++ +gy  +y + + + +++++  + f+l++++ ++   +++e++ +y     fffq  f+at+++i+sGavaer ++ a+++++  ++ ++yPv  +w w++ G+l        +++g +dfaGsg+vh++Ga+aa+++  +l +r  ++ ++ge ++ + + n  l  lGt+ilw+Gw+Gfn gs l ++  + a    k    t ++aaaG ++ +++ k+  g  dl  + nG l+Glv ita  +  +++aa++iG+v+  +   +  +l klk+ddpv  i+vhg++G +G+++v l                      +   +  q + v++i +++  +sl  +++l+++   rv +e e  Gld++e 
  MMETSP1174-20130828|7504_1   5 TDAFYLLFAGTVVFFMQSGFALLEAGSLRHRNVQNILFKNILDPCFGAMAFWSFGYGFAYGTYKqYGTNTFIggQYFFLDTFSDAST-ASDFETEDSY---HSFFFQFAFAATTATIISGAVAERCRVEAYFLYSTYICMFVYPVVVHWVWSSeGFLsafnsepmNDIGCVDFAGSGVVHMCGAVAAFCASYVLKPRLNRWLENGEDNPeMVAHNPVLFVLGTMILWFGWYGFNPGSTLGITASGYAHVALKTATTTTLSAAAGGVTNVFIFKYKKGIWDLGETCNGVLSGLVGITAACSVVETWAAVVIGFVSAFVYTAGQAILRKLKVDDPVNVIPVHGFCGAWGVIAVGLFAsrkmmkttyglseaglfysgEFKMLGLQCLEVFIILLWTAGSSLPFFFLLDKMNVFRVPQEAEEAGLDVSEH 427
                 699*********************************************************654414455555444444444444332.3333444333...35************************************************98888866666666789**************************************9984667777799**********************998888777777888889999999999*****9999**************************************************************************987667777788888655555442223345688899999999999****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1271.11
//
Query:       MMETSP1174-20130828|7509_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1174-20130828|7508_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 956.92
//
Query:       MMETSP1174-20130828|7513_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1174-20130828|7512_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 586.62
//
Query:       MMETSP1174-20130828|7516_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 424.84
//
Query:       MMETSP1174-20130828|7519_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 383.19
//
Query:       MMETSP1174-20130828|7515_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   35.7   0.0    0.00038   17.7   0.0    2.1  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.2e-08   0.00038     170     250 ..       5      84 ..       2      97 .. 0.91
   2 !   15.9   0.0   3.3e-07    0.0014     157     247 ..     114     200 ..      94     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.2e-08
   TIGR03896 170 tvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLqa 250
                 + +i+ g   d++Y++ +G+   si   ga +++      + +Gel++l      +atv a+  +   a+d+ ++++ Lq+
  MMETSP1174-20130828|7515_1   5 ETIIQQGAEGDRFYVVEEGNCVCSIDGVGAVKTIDGGTGADSFGELALLYNAPR-AATVTAISVVKAWALDQISFKQILQN 84 
                 568999999****************************************87666.8****************999998875 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.3e-07
   TIGR03896 157 laksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaak 247
                 ++ + k+k  ++g+v+i+eg+  d ++i+ +G +      +g       +  G  +Gel++l  ++  +a v a e +  L++d++ ++  
  MMETSP1174-20130828|7515_1 114 VTGALKPKMYATGDVVIEEGDDGDEFFIIQKGAVL---CYKGGIVVSDPLASGSYFGELALLHDEKR-AARVVATEPTTCLTVDRDTFKRV 200
                 555557888899*****************999753...4455555556688899********99988.899999**********9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 684.50
//
Query:       MMETSP1174-20130828|7517_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|7521_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 736.94
//
Query:       MMETSP1174-20130828|7522_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.1   0.0      0.026   10.4   0.0    1.5  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.3e-06     0.026     130     182 ..      74     135 ..      34     169 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.3e-06
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve..........arakgdefvksqekdslyhgespL 182
                 +g tal  A ++ + ei++lLl+ gas +           +a g    k+    +l+h++ pL
  MMETSP1174-20130828|7522_1  74 QGMTALGHACMRGDREIITLLLKHGASAQakdrdgdtplHTAAGMGWAKTIV-LLLQHSREPL 135
                 578************************9977777777766666666665544.5666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 632.16
//
Query:       MMETSP1174-20130828|7524_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|7525_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-143  475.5   0.0   3.1e-143  475.2   0.0    1.0  1  TIGR01798 cit_synth_I: citrate (Si)-synthase
    5.3e-98  326.0   0.0    6.3e-98  325.7   0.0    1.1  1  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
    1.1e-28   98.0   0.0    1.7e-28   97.4   0.0    1.2  1  TIGR01793 cit_synth_euk: citrate (Si)-synthase, eukaryotic


Domain annotation for each model (and alignments):
>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.2   0.0  2.2e-146  3.1e-143      26     411 ..      32     427 ..      13     428 .. 0.93

  Alignments for each domain:
  == domain 1    score: 475.2 bits;  conditional E-value: 2.2e-146
   TIGR01798  26 esglftfdpgfvstasceskitfidgdkgvllyrgypidqlaeksdylevcylllkgelptkeqkeefdekvkehtmvheqltrffkgfrrdahpmavlvgvvgalsafyhda........ldiedpkereiaairliaklptlaalsykysigqpfvypk...ndlsyaenflkmlfatpceey.kvnpvlaraldrifilhadheqnaststvrlagssganpfaciaagiaalwgpahgganeavlkmleeigsvekiaefikkvkdkndevrlmgfghrvyknydprakvlketceevlkelgkeddpllklalelekialedeyfiekklypnvdfysgivlkalgiptemftvifalartvgwisqwkemisdpelkigrprqlytgeekrd 411
                 + g   +dpg++ ta+ +s itfidg+kg l+yrgy+i+ql ek+ +lev +ll++gelp++e+   + ++v++ht vhe+l+ ++++fr+dahpm ++v+ + als+++ da        l  + p+  +  ++rl+ k+pt+aa ++++ +g+p+ yp    +  s++ nfl ml +   e +   +p l++ald +filhadhe n st++vr   s+ga+p+ +++ag aal+gp hgganeavl+mle+ig v+k+++f+ +vk ++   +lmgfghr+ykn+dpra++lk   + vl+ +g e+dpll++a  le++al+d +f+++kl+pnvdfysgi+ kalg+pt+mf v+fal rt gw+++wke ++d++ +i+rprqly g e r+
  MMETSP1174-20130828|7525_1  32 KLGRRLYDPGLRNTATARSAITFIDGEKGELKYRGYSIEQLCEKCTFLEVAFLLIYGELPSEEELCSWTSNVMTHTYVHEDLMSILRSFRYDAHPMGMFVSATAALSTLHPDAnpalqgteLYTNAPHIVNKQIFRLLGKVPTIAAAAWRHRVGRPYAYPTpgdEGSSWTANFLSMLDRLDHEPNyTAHPDLVKALDVMFILHADHELNCSTAAVRHVASAGADPYCAVSAGAAALFGPLHGGANEAVLRMLEDIGTVDKVPDFLTQVKSRQ--RKLMGFGHRIYKNHDPRASILKGHADRVLQLVGVEHDPLLAVARVLEELALKDAFFVQRKLFPNVDFYSGIIYKALGFPTDMFPVLFALPRTAGWLAHWKESLDDKDRNITRPRQLYVGPEPRE 427
                 578889********************************************************************************************************9983332221122344455566789************************973335689************99975599**********************************************************************************99..89*********************************************************************************************************************99886 PP

>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.7   0.0  4.6e-101   6.3e-98       2     368 .]      41     434 ..      40     434 .. 0.90

  Alignments for each domain:
  == domain 1    score: 325.7 bits;  conditional E-value: 4.6e-101
   TIGR01800   2 gLedvlaketklstidkeegkLtyrGydiedlaekasfEEvaylllygkLPtkeeLekfktelakerelpdevielleslpkeahpmavlrtavsalgaldkekekv........t.keeareiakrllaklptivaavyriregeeivapked...lsiaanFLymltGe......epskeeekaldiaLiLyaeHelnAstfaarviastlsDiysaivaaigaLkGplHGGAneavlkmleeiedpeeaeeyikkklenkekimGfGHrvYktaDpRakilkelakklsakkge..sklyeiaerlekvvee.....ekgllpnvDfysasvyaslgipvelftpiFalsRvsGWtahiiEqve..nnrliRPraeYvGeeerkyvpieeR 368
                 gL++  ++++++++id+e+g+L+yrGy+ie+l ek++f Eva+ll+yg+LP++eeL ++ +++ ++  + ++++++l+s+  +ahpm +  +a++al++l+++++          + ++  ++   rll+k+pti aa  r+r g+ +  p+      s +anFL+ml          + ++ +kald+  iL+a+Heln st a+r +as  +D y a+ a+ +aL GplHGGAneavl+mle+i++++++ +++++  ++++k+mGfGHr+Yk+ DpRa+ilk  a ++ +  g     l ++a  le+++ +     +++l+pnvDfys+++y+ lg+p+++f  +Fal R +GW ah  E  +  +  + RPr  YvG+e r++vp+ eR
  MMETSP1174-20130828|7525_1  41 GLRNTATARSAITFIDGEKGELKYRGYSIEQLCEKCTFLEVAFLLIYGELPSEEELCSWTSNVMTHTYVHEDLMSILRSFRYDAHPMGMFVSATAALSTLHPDANPAlqgtelytNaPHIVNKQIFRLLGKVPTIAAAAWRHRVGRPYAYPTPGdegSSWTANFLSMLDRLdhepnyTAHPDLVKALDVMFILHADHELNCSTAAVRHVASAGADPYCAVSAGAAALFGPLHGGANEAVLRMLEDIGTVDKVPDFLTQVKSRQRKLMGFGHRIYKNHDPRASILKGHADRVLQLVGVehDPLLAVARVLEELALKdaffvQRKLFPNVDFYSGIIYKALGFPTDMFPVLFALPRTAGWLAHWKESLDdkDRNITRPRQLYVGPEPREWVPLGER 434
                 8999999*********************************************************************************************9986543111111111022233444589*******************998865433689********98654545555677889**************************************************************************999******************************999886225599********999999999*********************************************985567899*****************998 PP

>> TIGR01793  cit_synth_euk: citrate (Si)-synthase, eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   1.2e-31   1.7e-28      89     404 ..      80     400 ..      38     416 .. 0.79

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 1.2e-31
   TIGR01793  89 gllwllltgevpseeqvaalsaelaaradlpkfvvklidalpstlhpmaqfaaavaaleveskfakayakgiak.kkyweytyedsldliaklptvaakiyrnlykdgka..asidkkkdysanlasmlg.......y.ddkslaelmrlyltihsdheggnvsahtshlvgsalsdpylslaaalnglagplhglanqevlvflkevvkevgenlteeqlkdyvwktlnsgkvvpgyghavlrktdprye.....sqrefalkklpddplfklvsqlykivpgiltekgkvknpypnvdahsgvllqyyglteasyytvlfgvsralgvls 404
                  + +ll+ ge+psee+  + ++++ + + + + ++ ++ ++   +hpm  f+ a aal +    a+   +g +  ++  +   ++ + l+ k+pt+aa  +r+      a  ++ d+   ++an+ sml        y  +++l++ + + +++h+dhe  n s+ +   v+sa +dpy +++a+ + l gplhg an+ vl +l+++        t +++ d++ +     + + g+gh + ++ dpr       ++r + l  + +dpl+ +   l +++          +  +pnvd +sg++ +  g+   + + vlf + r+ g l+
  MMETSP1174-20130828|7525_1  80 EVAFLLIYGELPSEEELCSWTSNVMTHTYVHEDLMSILRSFRYDAHPMGMFVSATAALSTLHPDANPALQGTELyTNAPHIVNKQIFRLLGKVPTIAAAAWRHRVGRPYAypTPGDEGSSWTANFLSMLDrldhepnYtAHPDLVKALDVMFILHADHEL-NCSTAAVRHVASAGADPYCAVSAGAAALFGPLHGGANEAVLRMLEDIG-------TVDKVPDFLTQVKSRQRKLMGFGHRIYKNHDPRASilkghADRVLQLVGVEHDPLLAVARVLEELALK--DAFFVQRKLFPNVDFYSGIIYKALGFPT-DMFPVLFALPRTAGWLA 400
                 46789*****************************************************999888888888887614445556677789*************976665555356779999*********96322222244467899999999********7.6666666679*******************************9998764.......458899***99999999****************87111114555556667899999877777666532..223345678****************975.6689*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 1295.14
//
Query:       MMETSP1174-20130828|7526_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   13.7   0.0     0.0055   13.1   0.0    1.2  1  TIGR00970 leuA_yeast: 2-isopropylmalate synthase


Domain annotation for each model (and alignments):
>> TIGR00970  leuA_yeast: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.3e-06    0.0055     401     473 ..      60     131 ..      53     136 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-06
   TIGR00970 401 dlprrlqiefssvvkdiadskGkelsskeisdlfkeeyllnveqlerislvdyaveddGteskvitavvkikg 473
                 +lp ++qi fss+ k++a+  G+ ls++++  +f ++  l +   ++   v y    dG  +k+i a  k++g
  MMETSP1174-20130828|7526_1  60 ELPGEVQIAFSSAYKKHAEEAGEALSAEDVHLVFLHAVELLEWDSDKGMAVAYFEVCDG-MKKCIGARGKLRG 131
                 79*******************************99988775555555445555444555.5666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 821.56
//
Query:       MMETSP1174-20130828|7535_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|7534_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1107.01
//
Query:       MMETSP1174-20130828|7533_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|7539_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|7542_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   11.2   3.2      0.061   11.2   2.2    1.0  1  TIGR00285 TIGR00285: DNA-binding protein Alba


Domain annotation for each model (and alignments):
>> TIGR00285  TIGR00285: DNA-binding protein Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.2   1.5e-05     0.061      24      72 ..       4      52 ..       1      55 [] 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
   TIGR00285 24 sgadeviikarGraisravdvaeivrnrflpdvkvkeikisteeiesee 72
                +ga+e    a   a ++a + a i  +r   + +v++  i+te++ +e+
  MMETSP1174-20130828|7542_1  4 KGAEEARAEAEKVAAEKASEDARIDAERVAAEKEVEDARIETEKVAAEK 52
                579999999************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|7543_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 224.87
//
Query:       MMETSP1174-20130828|7546_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   19.0   0.0    0.00038   17.9   0.0    1.5  2  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
     0.0021   15.3   0.0     0.0033   14.7   0.0    1.3  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0069   13.7   0.0      0.013   12.8   0.0    1.4  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
       0.01   12.8   0.0      0.011   12.7   0.0    1.1  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.7e-07   0.00038     118     170 ..      30      84 ..      18     100 .. 0.84
   2 ?   -1.3   0.0      0.28   2.8e+02     201     227 ..      96     122 ..      82     150 .. 0.58

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.7e-07
   TIGR02821 118 ysyvveelpalvaaef..PldaerqgitGhsmGGhGalvialknPdlfksvsafa 170
                  ++ ++el+al++  +   ld +r +i G smGG  al +a++  ++  +v a++
  MMETSP1174-20130828|7546_1  30 IDFSASELNALIDSLVtgGLDPSRIAIGGFSMGGNMALQTAIRCRHRLGAVFAMS 84 
                 567789******99773369************************99998887765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.28
   TIGR02821 201 asllvkelgleseilidqGladkflde 227
                 a +  ++++ ++ +++  G+ d+f++ 
  MMETSP1174-20130828|7546_1  96 ALADTSRKTNFPPVFMAHGTNDNFIQY 122
                 334445566677788888888888876 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.2e-06    0.0033      41     108 ..      10      81 ..       3     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-06
   TIGR02427  41 rvlryDkrGHGlSdvpegpysiedladdvlallDal.....giekaavcGlSlGGliaqaLaarrpdrvealv 108
                 + + yD+r       pe++ +i+  a+++ al+D+l     + +++a+ G S+GG +a++ a+r   r+ a+ 
  MMETSP1174-20130828|7546_1  10 SNVWYDRRAFE-PASPEMTSTIDFSASELNALIDSLvtgglDPSRIAIGGFSMGGNMALQTAIRCRHRLGAVF 81 
                 55667777664.45688999**************96333336789*******************999987754 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.2e-05     0.013      62     103 ..      43      84 ..      22      87 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.2e-05
   TIGR03695  62 kelleklkiekviLvGYSlGGRialalaleaperlegliles 103
                 + ++  l+ +++ + G+S+GG +al+ a++ ++rl +++  s
  MMETSP1174-20130828|7546_1  43 SLVTGGLDPSRIAIGGFSMGGNMALQTAIRCRHRLGAVFAMS 84 
                 4445567888999******************99998877655 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     1e-05     0.011     119     171 ..      39      95 ..      10     135 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
   TIGR01392 119 alldsL...gveklaavvGg.SlGGmqalewalsypervkkivvlatsarasaqaia 171
                 al+dsL   g++  ++ +Gg S+GG  al+ a++ + r+ ++ ++++ +  +++  +
  MMETSP1174-20130828|7546_1  39 ALIDSLvtgGLDPSRIAIGGfSMGGNMALQTAIRCRHRLGAVFAMSSYMSDDSWFYS 95 
                 566666555777888899988**************************9999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1174-20130828|7548_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.0   0.0      0.027   11.8   0.0    1.1  1  TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase


Domain annotation for each model (and alignments):
>> TIGR02312  HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.6e-06     0.027      16      81 ..       8      71 ..       1      74 [. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.6e-06
   TIGR02312 16 eaektreqvkqlslryPeltiedayriqkawvalklaeGrrviGhkiGltsramqkaanidePdyG 81
                +a  + +++ +ls +   + ++++ ++q++  +    eG  + G+kiG t  a q+ +++d P  G
  MMETSP1174-20130828|7548_1  8 GAKLEESEI-TLSPEQLTINVQEGRQVQDRIANFAEEEG-ILSGWKIGATNTASQTRLGLDGPFRG 71
                555555554.46777778889999999998877777666.689****************9999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|7545_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.4   0.0      0.028   12.4   0.0    1.0  1  TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit


Domain annotation for each model (and alignments):
>> TIGR02157  PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.8e-06     0.028       6      33 ..       2      29 ..       1      33 [. 0.93

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-06
   TIGR02157  6 vfvRkksgldhkhvgslhaadeklaLev 33
                vf+Rk++ l++ h   ++  d+++ L+v
  MMETSP1174-20130828|7545_1  2 VFSRKNQKLEFGHFAEMLMDDDDVGLQV 29
                9**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 153.28
//
Query:       MMETSP1174-20130828|7544_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-36  122.7   0.1    3.3e-36  122.4   0.1    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.9e-06   23.8   1.0     0.0013   15.8   0.1    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    6.6e-05   20.4   0.1      0.085   10.2   0.0    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    0.00018   18.4   0.0    0.00066   16.6   0.0    1.7  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0003   17.7   0.3     0.0011   15.9   0.2    1.7  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00031   17.8   0.9    0.00086   16.3   0.6    1.5  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0012   15.7   0.3     0.0041   13.9   0.2    1.7  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.016   11.9   0.2      0.022   11.4   0.1    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.1   6.4e-39   3.3e-36       2     160 ..       7     163 ..       6     166 .. 0.97

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 6.4e-39
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfk 160
                 + +k++++G+++vGKs+Ll ++++++   +++ ++++ d+  + i  dGkt+k++++DTaGqe+f+ i++ y+r + +++ v+d++ + +++++++ ++  ei ++a  ++v  +lv+nK+Dl++  ++ t+++++fa + +  + e+sa++ +n++++f+
  MMETSP1174-20130828|7544_1   7 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDF-ESFNNVK-SWLHEIDRYAC-ENVNKLLVGNKCDLESsrKVTTEQAKEFADSLGIEFLETSAKNSTNVENAFQ 163
                 5689**********************.999999*******************************************************.*******.**********9.*************************************************998 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00088      0.45     157     215 ..      10      67 ..       4      76 .. 0.73
   2 !   15.8   0.1   2.5e-06    0.0013      53     147 ..      69     163 ..      67     178 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00088
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittS.kfpgTTldlieipldkesvllDtpGi 215
                 + +++G + VGKS l+ +  + + +++ + t+   f+  T+dl    +  + ++ Dt+G 
  MMETSP1174-20130828|7544_1  10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGvDFKIRTIDLDGKTI--KLQIWDTAGQ 67 
                 5689************99998887777755543257766766544444..4478999985 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.5e-06
   TIGR03597  53 dflnllnslsekkalvvavvDifdle.....gslikelkrfvken.kvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkelle 147
                  f+ + +s+ +  + ++ v D+ d+e     +s+++e+ r++ en + llv+NK dl    + ++  +e  k+ a + g++    l +sak+ +++++ ++
  MMETSP1174-20130828|7544_1  69 RFRTITSSYYRGAHGIIVVYDVTDFEsfnnvKSWLHEIDRYACENvNKLLVGNKCDLE---SSRKVTTEQAKEFADSLGIE---FLETSAKNSTNVENAFQ 163
                 56667777777888899999*999984444459*******97655389********94...34444556666666777777...33355555555555444 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00059       0.3     126     141 ..      12      27 ..       9      39 .. 0.85
   2 !   10.2   0.0   0.00017     0.085      67     120 ..     111     165 ..      64     173 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00059
   TIGR00157 126 vfaGqSGVGKSSLiNl 141
                 +++G SGVGKS L+ +
  MMETSP1174-20130828|7544_1  12 LLIGDSGVGKSCLLLR 27 
                 689*********9866 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00017
   TIGR00157  67 akniepiivlnkkdlleeedaekeqleelk.nlgYkvllvsvkneegleelkekl 120
                  +n+++++v nk dl ++ ++  eq++e++ +lg + l +s+kn+ ++e+ ++ +
  MMETSP1174-20130828|7544_1 111 CENVNKLLVGNKCDLESSRKVTTEQAKEFAdSLGIEFLETSAKNSTNVENAFQRM 165
                 47899*****************88888876269**************99877765 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.4e+02     161     177 ..      12      28 ..       4      33 .. 0.81
   2 !   16.6   0.0   1.3e-06   0.00066     239     325 ..      84     166 ..      79     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.27
   TIGR02729 161 glvGlpnaGkStllsav 177
                  l+G + +GkS+ll ++
  MMETSP1174-20130828|7544_1  12 LLIGDSGVGKSCLLLRF 28 
                 58999********9765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.3e-06
   TIGR02729 239 llhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidllee.eeleellkelkeelekkvlaisaltkegleellkkll 325
                 ++ + d+++    + +++++   +e+++y    ++ ++l+v nk+dl ++ + ++e++ke++++l+ ++l++sa +++++e+  ++++
  MMETSP1174-20130828|7544_1  84 IIVVYDVTDF---ESFNNVKSWLHEIDRYAC--ENVNKLLVGNKCDLESSrKVTTEQAKEFADSLGIEFLETSAKNSTNVENAFQRMA 166
                 5566666666...678899999999999987..67788**********99677789999**********************9998876 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   2.2e-06    0.0011     175     348 ..       8     171 ..       2     181 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.2e-06
   TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkk..ylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyes 348
                  +k+ +iG   vGKS L+ ++ ++     s i+ +  D    +++ +gk+  +++ DTAG  r + ++      s+ r  + i    vv  v D +  +++++   +i +++ e+    ++v NK+Dl     + +++++e  ++++    ++++ +SA+++++ve+ ++ +    ++
  MMETSP1174-20130828|7544_1   8 LFKLLLIGDSGVGKSCLLLRFADD-TYTESYISTIGVDFKIRTIDLDGKTikLQIWDTAGQERFRTIT-----SSYYRGAHGI---IVVYDVTDFEsfNNVKSWLHEIDRYACENVN-KLLVGNKCDLE----SSRKVTTEQAKEFADSLGIEFLETSAKNSTNVENAFQRMAFQIKQ 171
                 478899999999999999998765.4566667777777666666666555116778999999988886.....3444443333...2344444443225556666666666666554.56889****99....44555666667777777999999*********9999877644433 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   1.7e-06   0.00086     210     371 ..       9     177 ..       4     182 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.7e-06
   TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDask.....pltkdd.eliitlkkkkkdlllvlNKiDLa........eleilkselkltvsllsakq.lkikelvdlltekinalyskek 371
                 +kl ++G+  vGKS Ll  + + d    s i     D     ++l+G ++  ++ DtAG            i  s    + a  ++ v D++      +  k   + i++   ++ + llv NK DL         + +++  +l ++ +  sak+ ++ ++  + +  +i++ +++++
  MMETSP1174-20130828|7544_1   9 FKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIRTIDLDGKTIklQIWDTAGQERFR------TITSSY--YRGAHGIIVVYDVTDfesfnNV-KSWlHEIDRYACENVNKLLVGNKCDLEssrkvtteQAKEFADSLGIEFLETSAKNsTNVENAFQRMAFQIKQRMKSQP 177
                 899**************88765.55666777777889999999999966511689****53332......244444..4555555555555431112123.3324778999999999**********9888776655555666677777666665415666777777788888777755 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2     8e-06    0.0041     191     347 ..      10     165 ..       4     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8e-06
   TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk......eeavlvsAkkgegleeLleai 347
                 ++ l+G    GKs ll ++++++  +        d ++r+++l+ ++ ++ + DT G          e F++ T    + a  ++ v D++d e  +++++  + ++   +e++++llv Nk+d+ ++++++++++k+       e +  sAk+++++e+  +++
  MMETSP1174-20130828|7544_1  10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTiKLQIWDTAGQ---------ERFRTiTSSYYRGAHGIIVVYDVTDFESFNNVKSWLHEIDRYACENVNKLLVGNKCDLESSRKVTTEQAKEfadslgIEFLETSAKNSTNVENAFQRM 165
                 5667777777777777777665555554455566777777777766436677777773.........44554244456778889999999998877777766666667778999*************99888888877555444557889999999998877666 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.4e-05     0.022      62     174 ..      63     176 ..       7     181 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.4e-05
   TIGR03918  62 DTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeel...leelkekkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeeaeek 174
                 DTaG +   ++ +  ++ ++ ++   d++        e  +  +++   +++   +++  ++v nk+dl++++k     +++   + ++e++ +sak+++++e+  ++++ +++++++++
  MMETSP1174-20130828|7544_1  63 DTAGQERFRTITSSYYRGAHGIIVVYDVTD------FESFNNVKSWlheIDRYACENVNKLLVGNKCDLESSRKVtteqAKEFADSLGIEFLETSAKNSTNVENAFQRMAFQIKQRMKSQ 176
                 555544444444443333333333333222......122223334401144556688999*********9887654333555666778999*************9999999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      262  (0.0638713); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 720.59
//
Query:       MMETSP1174-20130828|7554_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 782.83
//
Query:       MMETSP1174-20130828|7556_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.0   0.0    3.2e-09   33.8   0.0    2.1  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.2e-05   20.7   0.0    5.7e-05   19.9   0.0    1.3  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.8e-05   20.5   0.0    7.6e-05   19.5   0.0    1.4  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00015   18.7   0.0    0.00025   18.0   0.0    1.2  1  TIGR02053 MerA: mercuric reductase
    0.00016   17.1   0.0    0.00024   16.4   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0017   15.1   0.5      0.028   11.1   0.1    2.3  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0029   14.0   0.0     0.0043   13.5   0.0    1.1  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0053   13.0   0.0       0.59    6.2   0.0    2.1  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0091   12.6   0.0       0.23    8.0   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
  ------ inclusion threshold ------
      0.024   11.0   0.1      0.041   10.2   0.1    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.046    9.9   0.2       0.14    8.3   0.1    1.7  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.046   10.1   0.0      0.095    9.1   0.0    1.4  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit


Domain annotation for each model (and alignments):
>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   9.4e-12   3.2e-09     108     185 ..      19     101 ..       4     105 .. 0.83
   2 !    6.1   0.0    0.0027      0.91     197     257 ..     189     244 ..     185     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 9.4e-12
   TIGR04018 108 ekeeyeakkvvvatGyydipnll.nvpGedlpk..vsh..yykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrge 185
                 e++e +  +vvvatG+y+ p ++  v G+d  +  ++h   +++a    ++kvvv+Gg  sa+d a+   ++g + tlv+r +
  MMETSP1174-20130828|7556_1  19 ETHEEDFDYVVVATGMYGWPPYIpRVRGQDDFEglITHsnMFHDAAVCDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSA 101
                 556677789**********999857***8753322444338**************************************9986 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0027
   TIGR04018 197 pdlenrikegkikalfesevkeieeesvtletpegeveeiendfvlaltGyrpdlellekl 257
                  ++++++++gk++a+ +  +k+ +++ v+l++  g++  +e+d vl  tG++ d+ +l++l
  MMETSP1174-20130828|7556_1 189 YEFRDMVRDGKVAAK-KGALKKFTKNGVVLTD--GTE--LEADIVLFGTGFTKDYGILDRL 244
                 578999999999887.67799*******9988..555..99***************99875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-07   5.7e-05     102     173 ..      26     100 ..      11     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.7e-07
   TIGR01292 102 kaviiAtGakarklgik...geeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrr 173
                 + v++AtG+      i+   g+++f g    +    D+a+  +k+v+v+Ggg+sA+++a+   k++++ tlv r 
  MMETSP1174-20130828|7556_1  26 DYVVVATGMYGWPPYIPrvrGQDDFEGLITHSNMFHDAAVCDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRS 100
                 5577777776443333322388888887767777789999999*************************9999986 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.2e-07   7.6e-05     265     305 ..      61     101 ..      53     105 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.2e-07
   TIGR01316 265 kdtpvevgkkvvviGgGntavdaartalrlGaevhvvyrrt 305
                 +d+ v  gkkvvviGgG  a+d a +a + G   ++v+r +
  MMETSP1174-20130828|7556_1  61 HDAAVCDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSA 101
                 5788999******************************9975 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.4e-07   0.00025     125     200 ..      20     101 ..      10     106 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.4e-07
   TIGR02053 125 kevvgakrvliAtGarpavPeip...GLkeae.yltseelleldkip..eslvviGggaiavElaqlfarlGsevtllqrse 200
                 ++ +  + v++AtG   + P ip   G ++ e  +t +++++   +   +++vviGgg  a++ a  + + G   tl+ rs 
  MMETSP1174-20130828|7556_1  20 THEEDFDYVVVATGMYGWPPYIPrvrGQDDFEgLITHSNMFHDAAVCdgKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSA 101
                 5556678899***9976655555111667766889999999999888789****************************9995 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.1e-07   0.00024     617     706 ..      20     106 ..       6     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.1e-07
   TIGR03315 617 lkkegykyvvlaiGadkssklklkegnervlksleflkefkedktklklGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemP 706
                   +e+++yvv+a+G     +   +  ++  ++ l    ++ +d +++  Gk+vvv+GgG+ a+d a +a +    e  t+v+r ++  +P
  MMETSP1174-20130828|7556_1  20 THEEDFDYVVVATGMYGWPPYIPRVRGQDDFEGLITHSNMFHD-AAVCDGKKVVVIGGGKSAIDNAVSAGKH--GESSTLVFRSAHWPVP 106
                 56899*********99888888888888888887666555555.68889*****************999874..3778888887765555 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   8.3e-05     0.028     278     316 ..      63     101 ..      12     124 .. 0.80
   2 ?    1.8   0.0     0.052        18     374     427 ..     195     251 ..     181     258 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.3e-05
   TIGR01317 278 kikakgkkvvviGGGdtGadcvgtslrhgaasvlqfeil 316
                     +gkkvvviGGG +  d   ++ +hg  s l f   
  MMETSP1174-20130828|7556_1  63 AAVCDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSA 101
                 55679****************99999**99998887654 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.052
   TIGR01317 374 vrtvevelkkdedGkyeleevpgse.evleadlvllalGfvgpeqa..llddlgvdk 427
                 vr  +v  kk    k++ + v  ++ ++lead+vl+  Gf+    +   l +++++k
  MMETSP1174-20130828|7556_1 195 VRDGKVAAKKGALKKFTKNGVVLTDgTELEADIVLFGTGFTKDYGIldRLLQNKLNK 251
                 55666777777777887777776662568***********98765422344555555 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.3e-05    0.0043     120     185 ..      45     110 ..      19     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   TIGR03143 120 eGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaia 185
                 +G+++f G         d    +G++v+viGgG +a ++av   k++++ t++ r  ++  ++ +a
  MMETSP1174-20130828|7556_1  45 RGQDDFEGLITHSNMFHDAAVCDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSAHWPVPRHLA 110
                 566666666555555668888899*******************************99887777666 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0017      0.59      94     158 ..      22      86 ..      13     101 .. 0.68
   2 !    4.7   0.0     0.005       1.7     216     238 ..     212     234 ..     198     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0017
   TIGR02374  94 tlsyDkLilatGsy...pfilPipGaDk.kgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaara 158
                    +D +++atG y   p+i+ ++G+D  +g  ++ ++       aa    kk +viGgG   ++ a++
  MMETSP1174-20130828|7556_1  22 EEDFDYVVVATGMYgwpPYIPRVRGQDDfEGLITHSNMFHD----AAVCDGKKVVVIGGGKSAIDNAVS 86 
                 5679********99555678999998751444444333222....223356788999999888877765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.005
   TIGR02374 216 aerlrfkDGssleadlvvlaaGi 238
                 ++++ ++DG++lead+v++ +G 
  MMETSP1174-20130828|7556_1 212 KNGVVLTDGTELEADIVLFGTGF 234
                 568999**************996 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00069      0.23      96     183 ..      17     102 ..      13     107 .. 0.74
   2 ?    2.5   0.0     0.032        11     219     251 ..     212     242 ..     190     286 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00069
   TIGR03385  96 tnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersek 183
                  +e++ee +D+++++tG     + i+ +  +  f     +     ++ +   + +kvvviGgG  +++ + ++ ++g   tl+ rs +
  MMETSP1174-20130828|7556_1  17 SGETHEEDFDYVVVATGMYGWPPYIPRVRGQDDFEGLITHSNMFHDAAV--CDGKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRSAH 102
                 57899***********998766666666445444433332222333333..57789*************************9998865 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.032
   TIGR03385 219 geekvevltsgkvyqaDlvilavGvkPnselik 251
                  +++  vlt+g + +aD+v+ ++G   +  +++
  MMETSP1174-20130828|7556_1 212 KNGV--VLTDGTELEADIVLFGTGFTKDYGILD 242
                 4444..8*****************988876655 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00012     0.041     344     370 ..      60      86 ..      10      98 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
   TIGR03140 344 hCdGPlfkgkkvaviGGGnsGieaaid 370
                   d  + +gkkv viGGG s i+ a+ 
  MMETSP1174-20130828|7556_1  60 FHDAAVCDGKKVVVIGGGKSAIDNAVS 86 
                 56888899***************9985 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.35   1.2e+02     457     481 ..      18      42 ..       6      68 .. 0.76
   2 ?    8.3   0.1    0.0004      0.14     379     411 ..      67     100 ..      51     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.35
   TIGR03997 457 elvlaekPDavvlatGsrparpdla 481
                 ++ ++e  D vv+atG    +p ++
  MMETSP1174-20130828|7556_1  18 GETHEEDFDYVVVATGMYGWPPYIP 42 
                 55689999********877666555 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0004
   TIGR03997 379 r.kkvlvvGgGPaGleaaataarrGhrvtllere 411
                   kkv+v+GgG + +  a+ a++ G + tl+ r 
  MMETSP1174-20130828|7556_1  67 DgKKVVVIGGGKSAIDNAVSAGKHGESSTLVFRS 100
                 359***********************99998665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00028     0.095     280     314 ..      66      99 ..      50     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00028
   TIGR01318 280 veGkrvvvlGGGdtamdcvrtairlgakkvtcvyr 314
                  +Gk+vvv+GGG +a+d   +a ++g +  t v+r
  MMETSP1174-20130828|7556_1  66 CDGKKVVVIGGGKSAIDNAVSAGKHGES-STLVFR 99 
                 58***************99999888754.466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.44
# Mc/sec: 1145.91
//
Query:       MMETSP1174-20130828|7560_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|7567_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|7566_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 905.07
//
Query:       MMETSP1174-20130828|7568_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1117.69
//
Query:       MMETSP1174-20130828|7574_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    4.1  12.7        2.7    4.0   8.8    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.8   0.00066       2.7     435     513 ..      13      92 ..       2      95 .] 0.60

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00066
   TIGR03346 435 rleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdl.akaaelkygklpelekeleeaee 513
                   ++le+e+ae+ + +ae  e+ + e  ++ek++   ee e ++l+ eka  e++  a aa+l+  +l++++  +++a e
  MMETSP1174-20130828|7574_1  13 EKARLEAEIAEVARMKAEAAENARLEALAVEKARVEAEEAEMARLKAEKAAVEEQArAWAADLEQARLATIKAAVKAAAE 92 
                 33455667777777777777777777777777777777777777777766654443145667777777777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       427  (0.104096); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 321.51
//
Query:       MMETSP1174-20130828|7573_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 229.55
//
Query:       MMETSP1174-20130828|7564_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 947.49
//
Query:       MMETSP1174-20130828|7579_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   14.2   0.0     0.0028   14.2   0.0    1.1  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.7e-07    0.0028     285     329 ..      40      81 ..       5      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.7e-07
   TIGR02734 285 errrksekklskkrlslslvvlyfGlkGvegelpqlaHHtllfge 329
                 +  ++ +++++  ++s s+v +++ l+   +++++l HHtl+++ 
  MMETSP1174-20130828|7579_1  40 SSSSWVQRSFQGAQYSSSVVAIHWALD---KRIEELSHHTLFLAV 81 
                 3478999999*************8777...***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|7580_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.71    8.3   6.3        3.5    6.1   0.1    2.7  3  TIGR01687 moaD_arch: MoaD family protein
        6.2    3.9  10.8        0.6    7.2   3.0    2.1  2  TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST


Domain annotation for each model (and alignments):
>> TIGR01687  moaD_arch: MoaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.84   1.7e+03      15      36 ..      25      46 ..      19      66 .. 0.50
   2 ?    6.1   0.1    0.0017       3.5      11      67 ..      75     131 ..      69     143 .. 0.84
   3 ?    5.1   0.2    0.0035       7.1      11      53 ..     181     221 ..     172     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.84
   TIGR01687 15 kkeeeielegktvedlleelka 36
                k++e++++  +++ +l  +l  
  MMETSP1174-20130828|7580_1 25 KDKEQVDAMQRKMAHLRRQLDT 46
                5555555544444444333333 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0017
   TIGR01687  11 ditgkkeeeielegktvedlleelkarypkekkelfkegaelvkeviilvNgrnvds 67 
                 d+   ++  +e + + ++  +  l +++   k+e+ ++ ++++++++  +N  +v +
  MMETSP1174-20130828|7580_1  75 DLLEDRSSRVEHSLDLLDSQITDLDKHFTARKHEINENIKDEHQKLTATLNSFQVAF 131
                 66667788888888999999***************9999999999*99999877765 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0035
   TIGR01687  11 ditgkkeeeielegktvedlleelkarypkekkelfkegaelv 53 
                 +i+ +++ e +l+ + ve  l +l ++y++e + + +++ +++
  MMETSP1174-20130828|7580_1 181 NIISRRSQEQQLK-AFVERELAKLHRNYEEECQ-MRENEDDEI 221
                 4788899999997.99*************7766.444444444 PP

>> TIGR03637  cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.0   0.00029       0.6     114     206 ..      79     172 ..      71     181 .. 0.80
   2 ?   -0.1   1.4      0.05     1e+02     134     190 ..     179     236 ..     156     251 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00029
   TIGR03637 114 dddkrlavakalqlerielleqqWkkskelkeegflvdeekleallerseeeiekaeesqellaaeakltkalykla.aktveyedftrdkrkk 206
                 d   r++ +  l+ ++i+ l+++++  k+ ++e ++ +++kl+a l++++ ++e+ ++  e   ++  l+ +  k +  ++ + e+  r+k+ +
  MMETSP1174-20130828|7580_1  79 DRSSRVEHSLDLLDSQITDLDKHFTARKHEINENIKDEHQKLTATLNSFQVAFENEKNDREYREKDITLAMKSNKSLvGDKFKDEKTAREKKIT 172
                 566788888999999********************************************99999988888777665414444555555555544 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.05
   TIGR03637 134 eqqWkkskelkeegflvdeekleallerseeeiekaees.qellaaeakltkalykla 190
                 +++  + ++++++     e++l +l +++eee +  e++  e+  a a +t++l + +
  MMETSP1174-20130828|7580_1 179 QDNIISRRSQEQQLKAFVERELAKLHRNYEEECQMRENEdDEIQSALAAYTEKLQRSL 236
                 2233333334444444566777777778888777665541455566677777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       627  (0.152852); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 670.30
//
Query:       MMETSP1174-20130828|7590_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1174-20130828|7591_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 813.05
//
Query:       MMETSP1174-20130828|7593_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 587.12
//
Query:       MMETSP1174-20130828|7602_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|7599_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 1805.27
//
Query:       MMETSP1174-20130828|7596_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2029.33
//
Query:       MMETSP1174-20130828|7604_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 859.93
//
Query:       MMETSP1174-20130828|7605_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 549.07
//
Query:       MMETSP1174-20130828|7609_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1033.91
//
Query:       MMETSP1174-20130828|7610_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|7611_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 562.89
//
Query:       MMETSP1174-20130828|7607_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-111  368.9   0.0   7.1e-111  368.7   0.0    1.0  1  TIGR01891 amidohydrolases: amidohydrolase
    6.5e-08   29.8   0.1    2.2e-07   28.0   0.0    1.7  1  TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase
    7.4e-08   29.8   0.0    1.5e-07   28.8   0.0    1.4  1  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
    4.9e-07   26.9   0.5    8.5e-07   26.1   0.3    1.3  1  TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
      6e-05   20.0   0.2    9.2e-05   19.4   0.1    1.4  1  TIGR01883 PepT-like: peptidase T-like protein
    0.00035   17.4   0.1    0.00056   16.8   0.1    1.3  1  TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family
     0.0014   15.4   0.4     0.0024   14.6   0.3    1.5  1  TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase


Domain annotation for each model (and alignments):
>> TIGR01891  amidohydrolases: amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.7   0.0  1.2e-113  7.1e-111       1     366 []      22     383 ..      22     383 .. 0.98

  Alignments for each domain:
  == domain 1    score: 368.7 bits;  conditional E-value: 1.2e-113
   TIGR01891   1 ltdirrklhehPElsfeEfktaekvaeaLeslgievergvgkatgvvatigqgkpgpviAlradmDALpleeqtelpfkstnpgvmHaCGHdlhtaillgaaillkkladqlleGtvrlifqpaEEgglsGatkmieegvldd..VdavlglHvepsapagtvrlrsgtimaaadkfevtikGkgaHaakPhlgrdaldaaaqlvtalqaivsrsiepsrkavvsvgvieaGtapNVipdkAslkgtvRaleeevlkqieerveeilegaaamygakvelrldkaalpavtndealvqllkevakevlgseevaeepevlaGseDfalvsqkvpgaqfflgvsaegtelsaplhqpkfdidekalala 366
                 lt +r+++h+hPEl+f+E +t+ +v   L s g+ev +   + tgv++t+++g+ +++i+lradmDALp+ eq +l ++s+ pg++H+CGHd+ht++llg a+ l+ + +  ++Gtv++ifqp+EE   +Ga++m+e+g++d    d+v+glH++p  + g+v++ +g++ma +d+f+++++G g+Haa Ph+g+d++ + + lv alq+ivsr+i+p+++avvsv++++aG+a NVi+d+A l+gt+R+l+++++ ++++r+++i++++a+++gakve+ +  + +pa++n+++  ++++++a++v+g  +v ++ ++++GseDf++++ + pga++ lg++  g +l   lh+p++d+ ++++ ++
  MMETSP1174-20130828|7607_1  22 LTAWRHDFHRHPELGFQEHRTSRLVSTRLASFGLEVSD-GIGGTGVIGTLQRGSSEKSIGLRADMDALPILEQGTLAYRSETPGIFHGCGHDGHTTMLLGCAKHLAAHGE--FNGTVQFIFQPSEEEN-AGAKAMVEDGLFDRfpCDEVYGLHNWPGLEEGEVAVFPGPMMAGSDEFDIRVIGSGGHAAMPHQGVDPIVVGSILVSALQSIVSRTIDPTDSAVVSVTKFQAGSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNAVASAHGAKVEVSILAGGYPATVNNAECAEWAAQAAEKVVGRGHVSRSGDPSMGSEDFSFLLMERPGAYAWLGAG--GGPLACMLHNPSYDFNDDIIPVG 383
                 689***********************************.66779****************************************************************99..9*************95.*************9889*****************************************************************************************************************************************999*******************************************************75..7899**************99886 PP

>> TIGR01246  dapE_proteo: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.8e-10   2.2e-07     102     310 ..     115     326 ..      38     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.8e-10
   TIGR01246 102 aafvvaaerfvkknadhkGslsllitsDeegeaidGtkkvve.tlkerdelid.yavvgePssvk.klGDvikiGrrGsitgklkikGiqGhvaYPhkaenPvhk...avpvlkeliaiklDeGneffppsslqianieagtgasnviPgelkvkfnlrfssevseeelkskvekild....khkldYelewklsgepfltkegklikkvaeaieevlk 310
                  +++  + ++++++ +++G++ ++    ee +a  G+k++ve  l +r    + y +   P  ++ ++         Gs ++++++ G  Gh a Ph+  +P+     +v +l+ ++++++D+ +     + ++++  +ag  a nvi  e+ ++  lr   +++   l+ ++++i +    +h+ + e+     g p   ++ +  + +a+a e+v++
  MMETSP1174-20130828|7607_1 115 TTMLLGCAKHLAAHGEFNGTVQFIFQPSEEENA--GAKAMVEdGLFDRFPCDEvYGLHNWPGLEEgEVAVFPGPMMAGSDEFDIRVIGSGGHAAMPHQGVDPIVVgsiLVSALQSIVSRTIDPTDS----AVVSVTKFQAGS-AHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNavasAHGAKVEVSILAGGYPATVNNAECAEWAAQAAEKVVG 326
                 5688889999**************998888775..889888735777765433388999998766134333334468*************************975222688899999999998764....668899999996.789******************9999999988776511115688888888888888888888888888888888776 PP

>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.5e-10   1.5e-07     120     293 ..     125     301 ..     111     333 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.5e-10
   TIGR01910 120 lreaglklegdiilqavvdEEsgeaGtlsllqkgyrk...adgv..lipepsg...vdkivi..eqkgsiwfkvkvkGkqaHaslpeeGvnAieklakliteleeleeeknakkdeeeplkvtinvgvikggdkvnsvpdraelevrvriiPeenkeevkkeveslvkalsksdevlaelevev 293
                 l++   + +g++++ + + EE  +aG+++++++g+++    d+v  l + p+       ++      gs +f ++v G   Ha++p++Gv+ i   + l+ +l+ ++++ +         +  + v+  + g   n+++d+a l+++ r + + +  + +  ++++ +a+ + ++++ e+ +  
  MMETSP1174-20130828|7607_1 125 LAA-HGEFNGTVQFIFQPSEE-ENAGAKAMVEDGLFDrfpCDEVygLHNWPGLeegEVAVFPgpMMAGSDEFDIRVIGSGGHAAMPHQGVDPIVVGSILVSALQSIVSRTIDPT-----DSAVVSVTKFQAGSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNAVASAHGAKVEVSILA 301
                 444.57778888888888777.589999999999998888444411333344221122222211468999*************************************9998885.....67788899999*****************************************8888888776644 PP

>> TIGR01892  AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   1.5e-09   8.5e-07     169     300 ..     191     313 ..     186     332 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.5e-09
   TIGR01892 169 kasakvtvrGreghssrpdrGvsaielaakllarlvaladklkredleeaFtppyatlniGtvkGGkavniiaaaCelvlelRpipGmdpeellallekiaeevkekapgfevkveels.atpaleleedael 300
                    + ++v G  gh++ p++Gv+ i +   l++ l +     + +  +       a + + + + G+a n+ia++  l   lR++   + ++l++ l++i ++v ++a g +v+v  l   +pa    ++ae 
  MMETSP1174-20130828|7607_1 191 SDEFDIRVIGSGGHAAMPHQGVDPIVVGSILVSALQSI----VSRTIDP---TDSAVVSVTKFQAGSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNAV-ASAHGAKVEVSILAgGYPAT--VNNAEC 313
                 55689*******************98665555444433....3333332...245678999*****************************************87.56666666555433134443..223333 PP

>> TIGR01883  PepT-like: peptidase T-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.6e-07   9.2e-05     174     276 ..     193     299 ..      89     334 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.6e-07
   TIGR01883 174 kvdaliagkdahaglvpedgisaiavaa...kaiskmklgriDeetta..nigsfeGGvatnivqdelkivaearslsdekleaqvqkikeafeeaaekyGatvevet 276
                 + d+ + g   ha   p +g+ +i v +   +a++ +    iD    a   + +f+ G a n++ de +     rsl++    a   ++++  +  a  +Ga+vev +
  MMETSP1174-20130828|7607_1 193 EFDIRVIGSGGHA-AMPHQGVDPIVVGSilvSALQSIVSRTIDPTDSAvvSVTKFQAGSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNAVASAHGAKVEVSI 299
                 4566677788888.78********888722256667777889987665227789**************************99999999****************9976 PP

>> TIGR01879  hydantase: amidase, hydantoinase/carbamoylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.6e-07   0.00056     204     326 ..     188     310 ..     173     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.6e-07
   TIGR01879 204 iaGlswlkvklaGeaehaGttPmslRrDalvaaakiikeveekakrmtaptvgtvGkveaaP..ngvnviPekveftlDlRdldaevlskltkkleeeikaiskerdveleierlmekePvllse 326
                 +aG   +++++ G  +ha   P     D++v  + ++ + ++  +r+ +pt   v  v  +    + nvi ++  +   lR l++  + +l+++l +  +a++  ++ ++e+  l    P ++++
  MMETSP1174-20130828|7607_1 188 MAGSDEFDIRVIGSGGHAAM-PH-QGVDPIVVGSILVSALQSIVSRTIDPTDSAVVSVTKFQagSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISNAVASAHGAKVEVSILAGGYPATVNN 310
                 689999***********964.53.3469***99*999999999999777777776666665411568*******************************************999998888887765 PP

>> TIGR01900  dapE-gram_pos: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   4.2e-06    0.0024     164     288 ..     190     315 ..      38     328 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.2e-06
   TIGR01900 164 GtlrvevtvkGraaHsaRaWlGeNAihkaaevlerlaayearevevdGlkyreglnavlieggvakNviPdeaevnvnyRfAPdrsleqakaevrevl....egaevelevtdlspaarpgleaplake 288
                 G+  ++++v G   H+a + +G   i   + ++++l+++  r+  +d+ +   ++++++ ++g+a+Nvi dea ++   R   + +    ++++r++     +  ++++ev+ l+ +  +++++   +e
  MMETSP1174-20130828|7607_1 190 GSDEFDIRVIGSGGHAAMPHQGVDPIVVGSILVSALQSIVSRT--IDPTD-SAVVSVTKFQAGSAHNVIADEALLSGTLRSLNQTTRVALQTRLRDISnavaSAHGAKVEVSILAGGYPATVNNAECAE 315
                 778899*******************************999886..56666.5799******************99888887777777777777777442222334444566555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 1350.35
//
Query:       MMETSP1174-20130828|7617_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-105  351.3  23.6   1.6e-105  351.3  16.3    2.5  3  TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family


Domain annotation for each model (and alignments):
>> TIGR00842  bcct: transporter, betaine/carnitine/choline transporter (BCCT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.3  16.3  3.9e-109  1.6e-105       2     448 ..      79     584 ..      78     588 .. 0.87
   2 ?   -2.4   0.2     0.078   3.2e+02     427     444 ..     649     666 ..     646     674 .. 0.83
   3 ?   -3.5   0.0      0.17     7e+02       6      25 ..     675     694 ..     671     704 .. 0.74

  Alignments for each domain:
  == domain 1    score: 351.3 bits;  conditional E-value: 3.9e-109
   TIGR00842   2 wayilvvllflvfvlvlavsrygkikLGkddekpefsllsWlamlfaagmgigllfygvaEpltyylq..pplaaeeeseteaaeqalaytlFHwglhaWaiyalvalalaYftvrkkkplklssalspllgekvegliGkavDvlavvatvfgvatslglgalqltaglsal................fgipdslalqvliilvvialavisavsgvdkGikilSeinvalaallllfvlivgptvfllnslvdsiGkylqnllqlalrtdp.................eqekggflqkWTvfYWawwiswspfvglFiariSrGRtirefilgvllvptvltllwfsvfgnsallleq....nkaliaaeavvetet.a.........ealfellaalPlati...vsalaliviviffvtsadsaalvlaaissrevelgeeppklvrvfWavliglialslllsgg..........laalqtvviiaalPfllvllvvvaslike 448
                 w+yi    + + ++++l +s+y ++kLGkd+ekpe+s+l+W+amlf+ g++ gl++y+vaEp+ +y     p+ ++  + +++  +al+ t FHwglh W  y++v+  ++ +++r+  p++++ +l+pl+ge+++g++G+++D+l++  t+fgv tslglg+ q+++g+  l                +g+  ++ +q++ii v++++a+is++sg+++Gik+l +    l + l+l v+++ +++++ln++++ +G ++ +l+++a  td+                   ++  ++++WT+fYW wwisw+pfvg F+a+iSrGRt+ efi ++l++p++ ++ w+ +fg++++ + +    ++  ++a +v +++t a         + lf+ la++ ++t+    s+l+++ i+++fvts ds++lv++ i  +++ ++  pp+l+r+fWav+ g+ a +ll  g           l+alqtv i+ +lP+++vl++++ +l+  
  MMETSP1174-20130828|7617_1  79 WFYIASQNIWICLLVYLLFSKYRHVKLGKDNEKPEYSFLTWFAMLFSCGVATGLFYYSVAEPMWHYNGwgGPRWMDGMNDNDKGIHALMVTWFHWGLHGWIPYTVVGALMGIMSYRRDMPMTMRFCLYPLIGEEIYGWCGDLIDILSMCVTLFGVCTSLGLGVFQINQGMLRLdqgmyrgvatvdegdrMGVTFNSDTQITIIWVITLVATISVISGINNGIKRLGQFTFSLGMFLVLSVFFMDESMYILNAMTETFGYLIWYLPKIAWDTDSfellgtadegrggapdgLGGSATWMDGWTIFYWGWWISWAPFVGTFMAKISRGRTLGEFIAATLIIPSLYSFFWLGIFGSAGIRMDRlaksEGLDCTAGNVFSEDTnAvrlwclgteDILFDQLASYGTQTFgdfLSILTIVCICLYFVTSSDSGSLVID-IIGANGIQN--PPTLQRIFWAVTEGATASVLLNAGKdappgesgdaLKALQTVSIVGGLPYTVVLFLMCQALYIV 584
                 ******************************************************************8632455555555558999************************************************************************************977633333333222222223455577899*********************************************************************************9999999877778999************************************************************9876521223345555665555422122222221579999****98775221667777778899*************.777777778..9********************99866777888999*************************9865 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.078
   TIGR00842 427 viiaalPfllvllvvvas 444
                 +i ++lPfl +++++++s
  MMETSP1174-20130828|7617_1 649 IIGTTLPFLTIIVFMCMS 666
                 677899*********998 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.17
   TIGR00842   6 lvvllflvfvlvlavsrygk 25 
                 l++++f++f+ ++a++ry++
  MMETSP1174-20130828|7617_1 675 LAASVFFLFTALIACARYSA 694
                 56788888888899999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.52
# Mc/sec: 1979.84
//
Query:       MMETSP1174-20130828|7623_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|7624_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 248.75
//
Query:       MMETSP1174-20130828|7626_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 258.70
//
Query:       MMETSP1174-20130828|7625_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1174-20130828|7628_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 648.21
//
Query:       MMETSP1174-20130828|7627_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|7631_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|7630_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   23.8  21.5    0.00029   18.4   8.3    3.3  4  TIGR00803 nst: UDP-galactose transporter
     0.0007   17.0  18.7    0.00088   16.7  13.0    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.24     5e+02      78     107 ..      36      66 ..      27      82 .. 0.64
   2 ?    0.2   0.1     0.051     1e+02      65     102 ..      90     127 ..      71     130 .. 0.82
   3 !   11.7   0.2   1.6e-05     0.032       3      52 ..     131     180 ..     129     186 .. 0.93
   4 !   18.4   8.3   1.4e-07   0.00029      71     222 .]     179     326 ..     164     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.24
   TIGR00803  78 lsegnlvvglsavlsallss.glagvyfeki 107
                 l + ++++ + +++s +l++  la+ y+ +i
  MMETSP1174-20130828|7630_1  36 LTAWSCILYSFCAVSMVLVNkSLASSYNHLI 66 
                 4555667766666666666524666666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.051
   TIGR00803  65 vaivqlvqssaktlsegnlvvglsavlsallssglagv 102
                  + +++v + ++ ++ + +++ ++ +  a+l  g+a++
  MMETSP1174-20130828|7630_1  90 SKLMGWVTYPNFNFDTAKQWMPVNVFFCAMLFTGMASL 127
                 55678888888899999999999999999999999975 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 1.6e-05
   TIGR00803   3 sVPiliilkqnnlvlvalgnllaagkqvTqlkilstalmtlgslvaslgd 52 
                 sVP  +++k+ + +lva+g+  +++     l+   + +m lg++ a++ d
  MMETSP1174-20130828|7630_1 131 SVPMVTVFKNITNILVAAGDFYFFNSPSEFLVKAAFGIMLLGAVFAAKND 180
                 9************************99999*99**********9998866 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 1.4e-07
   TIGR00803  71 vqssaktlsegnlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 + +s  +   g +++++++ ++a  +++++   +   l ++  +fy++ l + l++ +  + ++l    + ++     +gy  +  ++++   +  + +  +v+ + + t+ i ++l++i+ +ll+ +lf+a++s  + + + + + +++lY
  MMETSP1174-20130828|7630_1 179 NDAS--VSFVGLFWMVMNCCATAGYVLYMKFATKTIKLSKFGMVFYNNLLCTILLLPVTILNGELALFANTTAIHT--MGYGMKNAFAGFVGFFLNFASLNCVARTGPSTYAIIGSLNKIPAALLGWILFNAEISPQSWFFIGVSMCGGFLY 326
                 3333..455579*****************99998888888888899999999998888877777665555555555..66888888999999999999999************************************999999999999999 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  13.0   4.3e-07   0.00088      31     298 ..      72     333 .]      36     333 .] 0.78

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.3e-07
   TIGR00817  31 pvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlyl..sLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk.sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakk 298
                 ++l  + +  + v+ + +s+ ++    ++ ++   k  +pv ++      t   sl+  +v ++ + k +  i+ ++    f +   p+   +  ++  ++lG   a+ +++s +++g+   m+ n   +a  ++  k+ tk   l+k  ++ +  +l  +ll+p++++  +l l ++  +  + + ++++++     a   +  + +  + + ++r  p ty++   l ++      +++f+  is++  + +++++ G flYs  k+kk
  MMETSP1174-20130828|7630_1  72 NFLLVVFQSIIAVVAVEFSKLMGWVTYPNFNFDTAKQWMPVNVFFCAMLFTGMASLQHNSVPMVTVFKNITNILVAAGDFYFFN--SPSEFLVkaAFGIMLLGAVFAAKNDASVSFVGLFW-MVMNCCATAGYVLYMKFATKTiKLSKFGMVFYNNLLCTILLLPVTILNGELALFANTTAIHTMGYGMKNAF-----AGF-VGFFLNFASLNCVARTGPSTYAIIGSLNKIPAALLGWILFNAEISPQSWFFIGVSMCGGFLYSYAKLKK 333
                 555556666677777777788888889999999999********9999999999***************999886665544444..3433333335666668888*************865.66666666666666665553359*************************99999885544444555555555.....333.333678999******************************************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 1465.08
//
Query:       MMETSP1174-20130828|7633_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.1   4.9        0.4    8.2   3.4    1.4  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.4   9.8e-05       0.4     139     283 ..      30     179 ..       3     183 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 9.8e-05
   TIGR03354 139 ddslteagegaaprpapqaasldPlkaldqepasaadlddga.lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeq...........aseavaltaflrglgldlelldsqaaedvleelgrllralveGLlqlLraraelkn 283
                 +      + g++p+  ++  +++P+k+  ++    a  ++++ +s+  +++ +++ p++ + +++++++ ++    p+ +pa+ + ++++            s ++ l+++  g  +d    ++++ e   +e+g+ + + +eGL++ L ar +lk+
  MMETSP1174-20130828|7633_1  30 EN-----ERGSSPQRIKE--DSEPPKEKTEKGVVKASKNESVvMSQVNKTQDGAQDPPESDYTPEDQLIASSTSSDPEEKPAKLQASDDSttqakdvaeivPSTETSLNQVDTGNCTDNLVKNTDEVEGNRDEVGAGIPTKLEGLQTKLEARPSLKE 179
                 22.....22222222222..33444333333333333333332333333333334444444444443333333333333333333333331122333445433333777777777777777777888888899999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 2367.55
//
Query:       MMETSP1174-20130828|7635_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1174-20130828|7640_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|7642_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1166.61
//
Query:       MMETSP1174-20130828|7650_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 480.44
//
Query:       MMETSP1174-20130828|7651_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|7653_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1174-20130828|7652_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1174-20130828|7655_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|7660_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|7661_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00086   17.1   0.0     0.0011   16.8   0.0    1.2  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-07    0.0011      56     134 ..     102     184 ..      51     202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.7e-07
   TIGR00568  56 geqYdytskeyetdkk.sP.....dfPkdlgdlvekrvaealgfedfkaeaalvnlYapgatlslHiDrsEeDlrlPllslslGl 134
                 g +Y+y +k ++ ++   P     ++P+ ++ +v++ +   +  + +++++a+vn+Y+ ++ +  H+D+  +D   P+  lsl  
  MMETSP1174-20130828|7661_1 102 GCGYEYRDKPPHGPHGiKPnyivaQLPPFIKRVVDRLIDRGVLPPLVEPDSAIVNVYTKDDCFPPHVDH--HDFLRPFCTLSLQS 184
                 668888888888776423411111567777777777777777778899*******************97..57788888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1072.94
//
Query:       MMETSP1174-20130828|7662_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   16.9   0.0    0.00062   16.9   0.0    1.8  2  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
       0.96    4.8  48.4      0.024   10.1   8.2    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     3e-07   0.00062      12      68 ..       4      57 ..       1      64 [. 0.88
   2 ?   -2.6   0.7      0.26   5.2e+02     255     255 ..     177     177 ..     118     234 .. 0.51

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3e-07
   TIGR00601 12 kfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekd 68
                ++++ +  d  + ++K+ i  ++    ++++qq+L y Gk L+D k + +y+i  + 
  MMETSP1174-20130828|7662_1  4 TITLTVALDASIEAIKKMIWRREQ---VPISQQRLRYGGKQLEDGKGLDDYRITKES 57
                66778888999********98887...**************************8765 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.26
   TIGR00601 255 q 255
                 +
  MMETSP1174-20130828|7662_1 177 T 177
                 1 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6  19.9    0.0089        18     723     874 ..      93     263 ..      61     284 .. 0.46
   2 ?   10.1   8.2   1.2e-05     0.024     701     809 ..     298     406 ..     271     415 .] 0.60

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.0089
   TIGR02168 723 leelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerl..................eslekeiaalekeleeleeqieeleeeiesleaeieeleeeleele 874
                 + +++  +  ++++ +r++   ++++e+++++e +l e +  +++l+ e +++ + ++e  +  ++l++e++q +e++ +  e+ ++++ +++  l++e ae+ +rl                   + ++ i+a+++++++l+++++     +  + +e +ele ++++l+
  MMETSP1174-20130828|7662_1  93 KLRTDAVIGLRNERQRRVTDLRQRWAEERTKREIALLEKKRTQTALKLECAKNAKLAAELAQLEARLKTELAQREEDVRKHLETTRNMQGQMEcMLRQEQAELVSRLqqelqaessakraalsrlGKAKALIEAKAEQVKQLTQRLRYDHVAAPIAMHERTELEVRQNKLH 263
                 334444444444444455555555555555555555555555555555555555444555555555555555555555555555555555555555555554444440000000000000000003344444444444444444444444444444444444444444443 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 1.2e-05
   TIGR02168 701 elkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealse 809
                   ++l+ el++ e++l++++++l e+ r ++e++ e++ l+++ ++++++++q+++++ +l  e ++++ + + +e+el   +++ ++l++e+++ ++e+++++++l++
  MMETSP1174-20130828|7662_1 298 GFSDLDLELSAKEQKLQQAEARLAEMARLSTEREVEIAGLQASKKHWRSEWHQQNSKRVHLGSELRTEKLMFARLEAELVVEKSKCARLTSEVATENSEVATENARLTS 406
                 3455555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       422  (0.102877); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.19s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1335.99
//
Query:       MMETSP1174-20130828|7669_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|7666_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-69  229.2   0.0    9.8e-69  229.0   0.0    1.0  1  TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
      8e-10   35.9   0.0    1.1e-09   35.5   0.0    1.1  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    1.9e-07   29.1   0.0    3.3e-07   28.3   0.0    1.3  1  TIGR03310 matur_ygfJ: molybdenum hydroxylase accessory protein, YgfJ family
    0.00011   19.1   0.0    0.00016   18.5   0.0    1.2  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00016   19.1   0.0    0.00023   18.5   0.0    1.2  1  TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
    0.00026   18.9   0.0    0.00041   18.3   0.0    1.3  1  TIGR02665 molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
    0.00038   17.3   0.0     0.0007   16.4   0.0    1.3  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.068   10.1   0.0    1.4  1  TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00453  ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.0   0.0   1.9e-71   9.8e-69       2     219 .]      72     288 ..      71     288 .. 0.98

  Alignments for each domain:
  == domain 1    score: 229.0 bits;  conditional E-value: 1.9e-71
   TIGR00453   2 avilAAGrgeRlgskvpKqylelagkplllhaleallaseavkevvvvvseedeellqkalkakaevklvkGGetRqeSVlngLkaleadaeiVlvhDaARplvkkelldrllealekaakaailalpvaDTlkrveadgkvvetvdReklwavqTPQlfrtelLlkalarakaegleitDdaslveklGlkvklvegdeenlKiTtpeDLalaeall 219
                 +++lA+G g+R+++++pKq+lel gkp+l+h+le +l++  +++vv+v+++++e  ++   + + ++ ++ +G++Rq+SV+ngL++++ da +V++hDaARpl+++e++ ++l+   + ++aa+l +p++ T+k++e   +v +t+dR++lw +qTPQ+++ ++L+++++r ++eg+e+tDd s+ve+lG++vkl  g+++nlK+Ttp+D+++ae+++
  MMETSP1174-20130828|7666_1  72 VILLAGGVGSRMKANQPKQFLELLGKPVLMHTLELFLSLDGIARVVLVIDAKYESQFEPLQALNPKLIFAPPGKERQDSVFNGLQKINDDAPVVCIHDAARPLITPEAIYKVLRDGIE-HGAAVLGVPMKATVKESEDGEFVLRTIDRSRLWEIQTPQVIKPSILMDGFKRVNEEGWEVTDDVSIVEQLGVPVKLTLGEYTNLKLTTPDDMQVAEQIM 288
                 89*******************************************************998888889****************************************************.99**************99888***************************************************************************986 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.1e-12   1.1e-09       2     127 ..      71     197 ..      70     204 .. 0.92

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.1e-12
   TIGR01173   2 svviLAAGkGtRmkSklpKvLhelagkpmlehvieaarkls.aekivvvlghgaeevkealkeesvkfvlqeeqlgTghAvkqalkalseeeeevlvlygDvPLisketleklleskkeekvtllta 127
                 +v++LA G G Rmk + pK   el gkp+l h +e   +l    ++v+v+  + e+  e l++ + k++     +   + v + l+++++++  v +  +  PLi+ e++ k+l+   e+++++l +
  MMETSP1174-20130828|7666_1  71 AVILLAGGVGSRMKANQPKQFLELLGKPVLMHTLELFLSLDgIARVVLVIDAKYESQFEPLQALNPKLIFAPPGKERQDSVFNGLQKINDDAPVVCIHDAARPLITPEAIYKVLRDGIEHGAAVLGV 197
                 7999**********************************9963689********************999999999999************99999999999*************99998888888765 PP

>> TIGR03310  matur_ygfJ: molybdenum hydroxylase accessory protein, YgfJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.4e-10   3.3e-07       2     113 ..      72     185 ..      71     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 6.4e-10
   TIGR03310   2 aiilAaGlssRMGkn..KllLplkgktileevvenvlela.fdevivvlgeeadelvellankkkiklveNsqyaeGqsssiklgle.lseesdgalillgDqPlvtaeiiqklie 113
                 +i+lA+G +sRM +n  K++L+l gk++l +++e +l l+ +++v++v+  + +  +e l    + kl+  +  +e q  s+  gl+ +++    + i  +  Pl+t+e i k+++
  MMETSP1174-20130828|7666_1  72 VILLAGGVGSRMKANqpKQFLELLGKPVLMHTLELFLSLDgIARVVLVIDAKYESQFEPLQ-ALNPKLIFAPPGKERQ-DSVFNGLQkINDDAPVVCIHDAARPLITPEAIYKVLR 185
                 899*********85444********************9874799*******9999999876.7788888888777755.789999997888888888888889****999998865 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.1e-07   0.00016       3      63 ..      72     127 ..      70     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.1e-07
   TIGR03992   3 avilaAGkGeRlrPltetrpKvllpvagkpllehliealkea.gieelvlvvgyekekvkey 63 
                 +++la G G+R++   +++pK++l ++gkp+l h++e   ++ gi ++vlv++    k+++ 
  MMETSP1174-20130828|7666_1  72 VILLAGGVGSRMK---ANQPKQFLELLGKPVLMHTLELFLSLdGIARVVLVID---AKYESQ 127
                 57788899****8...79******************98766538999999994...344444 PP

>> TIGR02623  G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.5e-07   0.00023       3      54 ..      72     121 ..      70     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.5e-07
   TIGR02623   3 avilagglgtriseetalrpkpmveiggkpilwhilkiy.saygikefiiclg 54 
                 +++lagg+g+r+      +pk ++e+ gkp+l h l+++ s  gi   ++ + 
  MMETSP1174-20130828|7666_1  72 VILLAGGVGSRMKA---NQPKQFLELLGKPVLMHTLELFlSLDGIARVVLVID 121
                 6789*******975...58******************9834579988887665 PP

>> TIGR02665  molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     8e-07   0.00041       2      37 ..      71     107 ..      70     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8e-07
   TIGR02665   2 sgviLAGGrarRMgg.edKglvelrgkpLiehvlerl 37 
                 ++++LAGG ++RM   + K  +el gkp+++h+le +
  MMETSP1174-20130828|7666_1  71 AVILLAGGVGSRMKAnQPKQFLELLGKPVLMHTLELF 107
                 5799*********86257***************9865 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0007       3      61 ..      73     129 ..      71     135 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.4e-06
   TIGR01208   3 lilaaGkGtrlrPltftrakqlipvankPilqyaiedlvea.gikdigivvseetkeeik 61 
                 ++la+G G+r++     ++kq++ +++kP+l++++e + +  gi  + +v+  +++ +++
  MMETSP1174-20130828|7666_1  73 ILLAGGVGSRMKA---NQPKQFLELLGKPVLMHTLELFLSLdGIARVVLVIDAKYESQFE 129
                 68999*****986...89******************9877549*******9998887765 PP

>> TIGR01207  rmlA: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013     0.068       3      61 ..      73     129 ..      71     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR01207   3 iilaGGsGtrlypitlavskqllpvydkpmiyyplsv.lmlaGirdiliistpedtprfk 61 
                 i+laGG G+r+     +  kq+l +  kp++ + l   l l Gi  ++++   + +++f+
  MMETSP1174-20130828|7666_1  73 ILLAGGVGSRMKA---NQPKQFLELLGKPVLMHTLELfLSLDGIARVVLVIDAKYESQFE 129
                 89********874...568****************863679***8777666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1167.90
//
Query:       MMETSP1174-20130828|7671_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|7672_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|7670_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.9   0.0      0.033   11.4   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-06     0.033      10      54 ..     288     336 ..     286     338 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.1e-06
   TIGR02349  10 kdAseeeikkAYrklakkyHPDrnkg....ekeaeekfkeineAyevLs 54 
                 ++ s+e i++ Y +l+  +HPDr ++    ++ a++ f  i+e y+ Ls
  MMETSP1174-20130828|7670_1 288 RHPSHELIRQRYHRLSLLWHPDRWAQypefQPLAQKAFELISESYKSLS 336
                 5667899****************99877778889***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1439.11
//
Query:       MMETSP1174-20130828|7677_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1174-20130828|7680_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 746.42
//
Query:       MMETSP1174-20130828|7685_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|7684_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 873.98
//
Query:       MMETSP1174-20130828|7686_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 819.24
//
Query:       MMETSP1174-20130828|7687_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.2   3.6     0.0012   16.0   2.5    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
  ------ inclusion threshold ------
       0.01   11.4   0.2      0.013   11.1   0.1    1.1  1  TIGR00314 cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.5   5.9e-07    0.0012      62     203 ..      61     217 ..      26     253 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.9e-07
   TIGR03752  62 rtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle............dvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdregk....ksapskesfptsf.d 203
                   ++a +++ ++++++l+ +Ne+l++  +  +++ +s++e +    ++e+k++++e+++ ++  +++ee+  + +++ +            +  +++ + ++ l  glG ++g ++  +++++v++ +p+ +   ++  +     s+p  e++ +sf d
  MMETSP1174-20130828|7687_1  61 SEIIAMVQANQQDVQELKGKNERLEEICNVQETEIRSLRESLVCMRNNEEKAAADESNNEEKVETTIEEE--KCMEREDmrepatsfggtpEAWMTRPADRTALRAGLGPSTGTQRRPTASSNVQQPRPARKSDENTGPQihaqGSSPVVENLINSFtD 217
                 5799********************9766666666677777777666666666665555543333333332..333333334677889899977788899999****************99999998888766555554446444445555666666652 PP

>> TIGR00314  cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.4e-06     0.013     415     494 ..      21     103 ..      14     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.4e-06
   TIGR00314 415 lrvkealakakkGdl..skleeleelclacgrceqvcpknipivslvtkaaeerlkdekgklra..GrGpikdveirkvGapiv 494
                 lr+ e++  a+   +  s+ e+ +e  +  gr eq+ p+n +i+ +v+ a+++ +++ kgk  +      ++++eir++ + +v
  MMETSP1174-20130828|7687_1  21 LRIPETFSIAAMATRssSDSENSTESFYDLGRGEQQIPNNSEIIAMVQ-ANQQDVQELKGKNERleEICNVQETEIRSLRESLV 103
                 66777666666544400556777999*******************985.7777888888886541245789******9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1067.56
//
Query:       MMETSP1174-20130828|7688_1  [L=1412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.18s 00:00:00.98 Elapsed: 00:00:00.63
# Mc/sec: 2958.23
//
Query:       MMETSP1174-20130828|7691_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 235.98
//
Query:       MMETSP1174-20130828|7693_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|7696_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.7   0.0      0.012   12.7   0.0    2.0  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.7    0.0004       1.6     105     179 ..     126     195 ..      60     195 .. 0.60
   2 ?   12.7   0.0   2.9e-06     0.012     341     375 ..     176     210 ..     172     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0004
   TIGR00601 105 svaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGsereetveeimemGyereeverAlR 179
                  +     ++P+  ++ +s ++e++t+ +    +++a++++       ++  ++e  v ++m mG+ +e+ + A R
  MMETSP1174-20130828|7696_1 126 QPGRPGGNTPSPGAAANSASRENTTSRSAGRRAAAAPTST-----ERAAKIKMEAGVSKLMAMGFTKEQCTDAYR 195
                 2222233445545555555666666666655666666544.....44566789999*************998876 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.9e-06
   TIGR00601 341 aieRLkalGFdrdlviqaylACdknEelAanyLle 375
                  +++L a+GF ++   +ay  Cd + e A n+Ll+
  MMETSP1174-20130828|7696_1 176 GVSKLMAMGFTKEQCTDAYRNCDGDVETASNLLLD 210
                 5899*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 672.52
//
Query:       MMETSP1174-20130828|7697_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.6   0.3      0.058   11.3   0.2    1.7  1  TIGR04140 chp_AF_0576: TIGR04140 family protein


Domain annotation for each model (and alignments):
>> TIGR04140  chp_AF_0576: TIGR04140 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.4e-05     0.058       3      35 ..      76     110 ..      74     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.4e-05
   TIGR04140   3 rile..taippeeleeIaeksnaeVriklkeveey 35 
                  ++   t i++e++e+Ia  s+++  i+l+ev + 
  MMETSP1174-20130828|7697_1  76 SKITseTNINEEDIEQIAGTSGKNAYIALQEVAKA 110
                 555556*************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1336.39
//
Query:       MMETSP1174-20130828|7700_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 500.78
//
Query:       MMETSP1174-20130828|7702_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1174-20130828|7704_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 868.57
//
Query:       MMETSP1174-20130828|7705_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    9.6   7.2        0.2    9.4   5.0    1.1  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
        0.2    9.3   3.3       0.24    9.0   2.3    1.1  1  TIGR00985 3a0801s04tom: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.0   9.7e-05       0.2      32      91 ..      11      73 ..       5      83 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.7e-05
   TIGR01144 32 addlasaekakkelala.qkkaqellkeakeeaaeiienAn..krkseikeeikkeAeeerek 91
                a  la  eka+ e+++a  ++ + +l++ak+ea + ++     +   ++ke + +eA + ++k
  MMETSP1174-20130828|7705_1 11 AGRLARREKARVEMEKAiSENLRRQLEKAKTEARDTVASEPeaRDTTQVKEGAVAEAAKGSKK 73
                77899999999888765167889***********99876540134457788888888887776 PP

>> TIGR00985  3a0801s04tom: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3   0.00012      0.24      40     107 ..      13      80 ..       6      85 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00012
   TIGR00985  40 klrrrakkqakaekqeeelakekldkvvrelvaelakepvpsdaeekeafFleevqlGEeLlaqqdkv 107
                 +l rr k+  ++ek   e  +++l+k   e+ + +a+ep   d+ ++++  + e ++G +    +d v
  MMETSP1174-20130828|7705_1  13 RLARREKARVEMEKAISENLRRQLEKAKTEARDTVASEPEARDTTQVKEGAVAEAAKGSKKNTSPDTV 80 
                 57788888888888888888888888888888899999998888888887777777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 366.16
//
Query:       MMETSP1174-20130828|7707_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1174-20130828|7708_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 559.63
//
Query:       MMETSP1174-20130828|7709_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    7.7   9.7       0.23    7.7   6.7    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.7   5.6e-05      0.23     109     170 ..       4      65 ..       1      72 [] 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 5.6e-05
   TIGR03319 109 kekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaaklik 170
                 + ++le++++++ee++++ +e +++q+e+L+    +  eeA+   le  +++++ee  +  +
  MMETSP1174-20130828|7709_1   4 HGAALEAQRRQIEEENNSQNEAQHQQSEKLHTAHIMGLEEAHGAALEAQRRQIEEENNSQNE 65 
                 557899**********************************************9999876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|7711_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|7714_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1174-20130828|7712_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.32s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 1861.89
//
Query:       MMETSP1174-20130828|7715_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1603.67
//
Query:       MMETSP1174-20130828|7719_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1356.19
//
Query:       MMETSP1174-20130828|7723_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 802.49
//
Query:       MMETSP1174-20130828|7727_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1174-20130828|7725_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 649.79
//
Query:       MMETSP1174-20130828|7726_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.0   0.1      0.045   11.3   0.0    1.4  1  TIGR03045 PS_II_C550: cytochrome c-550


Domain annotation for each model (and alignments):
>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.045      51     111 ..      30      93 ..      26     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
   TIGR03045  51 vkkgkrlfnsaCatChvgGitktnpnvgLdleaLelatPaRdnvealvdylk...nPtsYDgee 111
                 v++  ++f+   ++Ch + i k np  +  ++a  +a  +   v++ +d+ k    P+ YD e 
  MMETSP1174-20130828|7726_1  30 VRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKrrnRPVKYDREL 93 
                 567789***999**************************************98443599999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 778.74
//
Query:       MMETSP1174-20130828|7730_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 432.92
//
Query:       MMETSP1174-20130828|7731_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|7735_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|7734_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.3   0.0    0.00066   16.6   0.0    1.2  1  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-07   0.00066      20     149 ..     339     470 ..     328     476 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.6e-07
   TIGR03866  20 dntisvidletlevvktlkvGer..PrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGveP.eGlavsPdgklvvntsettnma 149
                 d ++ + d+++ + v+ +  G+    r +++++dgk+ ++++s +  ++  d+et + + +l   + P +  ++p+++ l +    d+ +   d+++ + ++e +  +   + l    dg+  v+ts+  +++
  MMETSP1174-20130828|7734_1 339 DGKVKIWDSHNERRVRRTYNGHSlgVRDVNFTNDGKF-FISSSFDRFMRYWDTETGQAVLTLTNRKVPYQCQFHPSEQNLCLMASSDNRLWTWDMRTGQTVQEYNHHIKAvNSLLFCDDGRRFVSTSDDKKVL 470
                 66777777777666666666654226999*****996.8999*****************************************************************98637899999*********977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2054.29
//
Query:       MMETSP1174-20130828|7737_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1170.87
//
Query:       MMETSP1174-20130828|7736_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 1379.50
//
Query:       MMETSP1174-20130828|7740_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1234.28
//
Query:       MMETSP1174-20130828|7751_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 654.67
//
Query:       MMETSP1174-20130828|7755_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-05   20.7   0.0    0.00022   19.2   0.0    1.8  2  TIGR00229 sensory_box: PAS domain S-box protein
     0.0035   13.7   0.0      0.006   12.9   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1   2.2e+03      68      86 ..     280     297 ..     258     310 .. 0.51
   2 !   19.2   0.0   1.1e-07   0.00022      18     115 ..     467     563 ..     461     573 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
   TIGR00229  68 rrlegerepvseerrvkrk 86 
                 ++le+++++++   ++ r 
  MMETSP1174-20130828|7755_1 280 EILEQRHQVIQRMMNY-RT 297
                 2333344444444444.33 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.1e-07
   TIGR00229  18 iivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspirdaggelgvvgivrD 115
                 i+ ++   ni ++N+ + +i G++++e++G+++ + i  ++ + v+ ++  +++ + + p+s+ +  ++k+G+ +   v+v pi + ++++++++++++
  MMETSP1174-20130828|7755_1 467 ICSANAPFNIEQANQPWLDICGFTEAEARGKTFKI-IQGDETDFVK-VADLMRSvQAKLPHSMLTVNYKKSGQPFLNFVRVFPICTGSEVTHFLSVIEE 563
                 56666778999*********************999.7677777776.888888888899*****9999*****************99999999999875 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.9e-06     0.006      23     111 ..     473     560 ..     456     579 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.9e-06
   TIGR02938  23 kanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGm 111
                   ni  an+ + +i G+++ e  Gk   ++    t      +l +s+  k P +   +n +k g+ +l  + v P+     e thfl +
  MMETSP1174-20130828|7755_1 473 PFNIEQANQPWLDICGFTEAEARGKTFKIIQGDETDFVKVADLMRSVQAKLPHSMLTVNYKKSGQPFLNFVRVFPICT-GSEVTHFLSV 560
                 569999*************************9999999999**********************************986.4689999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 1880.04
//
Query:       MMETSP1174-20130828|7756_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2154.72
//
Query:       MMETSP1174-20130828|7758_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1174-20130828|7760_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|7762_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   10.8   0.0      0.063   10.8   0.0    1.6  2  TIGR01922 purO_arch: IMP cyclohydrolase
       0.49    6.6  11.8       0.61    6.2   8.2    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.75    5.8   9.1       0.79    5.8   6.3    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01922  purO_arch: IMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3       1.5   2.1e+03      24      40 ..     138     154 ..     131     161 .. 0.73
   2 ?   10.8   0.0   4.6e-05     0.063     111     169 ..     230     283 ..     226     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.5
   TIGR01922  24 ssrsfpnrkikkreeav 40 
                 ss   ++r+++ re +v
  MMETSP1174-20130828|7762_1 138 SSSGSSDRRVQSRERTV 154
                 34445799999998876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 4.6e-05
   TIGR01922 111 riaaildeeeaylGivaadevlvrkvkekdeegvllsvygeekdepeaielkaetaeel 169
                 ri ail++  + +G+v++  v+v+k     e+g++l+ y+ + + ++  +++ +++++l
  MMETSP1174-20130828|7762_1 230 RIQAILEDRSIIVGVVRK--VYVKKD---TETGTYLGKYKVDWEGDADLDVSDAESDNL 283
                 9***************85..888775...58********76666666666655555554 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.2   0.00044      0.61     307     439 ..      65     201 ..      31     214 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00044
   TIGR02442 307 khRrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaes....aeevalepagkifrvkllavska.r.argasGrr.sktrsdkrgryvkaernreeaddlavdA 439
                 +hR    p+ee+ +++ k++++++++ +    +e e +e+ +++s k+++++  k+d++ + +k++a++++++    ++++ ++++++++++  ++ s++ +   ++ G++ sk  sd   r  ++e+++ + + l+++A
  MMETSP1174-20130828|7762_1  65 RHRDPVLPMEEASSTSGKRPQRSSTSSSLRTGREAERHESLRSSSSKRDSQHKSKRDSSGTSSKRSASGHTSRsssgSSDRRVQSRERTVKPSRTSNSARyNmSAKRNGEArSKPVSDI-ARL-RSEQRS-TRNALHLEA 201
                 799999*****966666666666666664444444444444444444444444444444444444443333332222678889999999999988888876445556665503333333.232.333332.456666666 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.3   0.00058      0.79     182     367 ..      85     195 ..      18     256 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00058
   TIGR00934 182 krddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkk.strvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmvek 367
                 +r++++  l +G+                        + e ++slr+++sk++++ +++  s+ +++                                                  +r  + +  r s +s ++ +q + +r++k++   +s   +++  k ++ a+++ +++++r + +q+++ +
  MMETSP1174-20130828|7762_1  85 QRSSTSSSLRTGR------------------------EAERHESLRSSSSKRDSQhKSKRDSSGTSS--------------------------------------------------KRSASGHTSRSSSGSSDRRVQ-SRERTVKPSRTSNSARYNMSA-KRNGEARSKPVSDIARLRSEQRSTRN 195
                 2222222222222........................222233333333332222011122222222..................................................222333333333333333322.333333333333222222222.22333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1328.69
//
Query:       MMETSP1174-20130828|7766_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|7769_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1174-20130828|7770_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|7771_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|7772_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|7773_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 548.26
//
Query:       MMETSP1174-20130828|7776_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   16.2   0.0    0.00048   15.9   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.017   12.5   0.0      0.023   12.1   0.0    1.1  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.028   11.4   0.0      0.038   11.0   0.0    1.1  1  TIGR03885 flavin_revert: probable non-F420 flavinoid oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.5e-07   0.00048     570     627 ..     102     159 ..      90     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.5e-07
   TIGR02917 570 alaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkl 627
                   aL+ + ls+g    a   +++++ + + +pe +++l+ra+  ++++++a+++++k 
  MMETSP1174-20130828|7776_1 102 LRALVTAALSDGMHYNATFFADKLVTMSRGKPEDVLMLARAYRDQGEHRQALHTLRKY 159
                 5589999999*********************************************996 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05     0.023     132     196 ..      96     160 ..      87     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.7e-05
   TIGR02521 132 eqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryq 196
                   p + +  +++ al+ g + +a     +++ + +++pe +l la+ + ++g+  +A + l +y+
  MMETSP1174-20130828|7776_1  96 SDPPAKLRALVTAALSDGMHYNATFFADKLVTMSRGKPEDVLMLARAYRDQGEHRQALHTLRKYK 160
                 5666778888999999999999999999************************************7 PP

>> TIGR03885  flavin_revert: probable non-F420 flavinoid oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.8e-05     0.038     156     209 ..      99     153 ..      88     161 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.8e-05
   TIGR03885 156 petppallgaalteetarwlgeWaDGLitvsk.skeklkeiveafregGGagkpl 209
                 p++  al++aal+      ++ +aD L+t+s+ ++e++  ++ a+r++G + ++l
  MMETSP1174-20130828|7776_1  99 PAKLRALVTAALSDGMHYNATFFADKLVTMSRgKPEDVLMLARAYRDQGEHRQAL 153
                 777889************************98356889999********988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 682.57
//
Query:       MMETSP1174-20130828|7781_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1026.11
//
Query:       MMETSP1174-20130828|7783_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 259.85
//
Query:       MMETSP1174-20130828|7787_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 588.87
//
Query:       MMETSP1174-20130828|7790_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    8.3   2.9       0.26    8.1   2.0    1.0  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
       0.85    7.7   5.2        1.5    6.9   0.3    2.0  2  TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein
        4.2    4.3  24.2        4.5    4.2  16.8    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.0   0.00019      0.26      72     123 ..       9      60 ..       3      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00019
   TIGR03364  72 ekaglsvrenGslvlarteeelavleefaavreeaeysvelLspaevaaklp 123
                 eka+l+++++  l + ++e e ++ eef+++++e e++++  +p++++  ++
  MMETSP1174-20130828|7790_1   9 EKARLEAEKQAQLETDERELERHLAEEFSRLQTETEERARQKTPEKARLEAE 60 
                 79999************************************99999987766 PP

>> TIGR02610  PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.3    0.0011       1.5       7      39 ..       1      33 [.       1      43 [. 0.86
   2 ?    3.7   0.4     0.011        15       7      30 ..      45      68 ..      39      70 .] 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0011
   TIGR02610  7 erdhslgkdaarakaedlarkladryglkaqWe 39
                er+  +++++ar +ae+ a+  +d+ +l+ + +
  MMETSP1174-20130828|7790_1  1 ERARQKSPEKARLEAEKQAQLETDERELERHLA 33
                57888999*****************99998865 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.011
   TIGR02610  7 erdhslgkdaarakaedlarklad 30
                er+  +++++ar +ae+ a+  ad
  MMETSP1174-20130828|7790_1 45 ERARQKTPEKARLEAEKKAQLEAD 68
                6888999*********99986665 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  16.8    0.0033       4.5     126     189 ..       4      66 ..       1      70 [] 0.26

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0033
   TIGR02794 126 kqaeeakakqaaEakakaeaeaKa.ekkakee...AakkaEeeakakaaaeakkkaEaeeakkkaeae 189
                 +q+  +ka+ +aE++a+ e + ++ e+  +ee   ++ + Ee a+ k  ++a+ +aE     kka+ e
  MMETSP1174-20130828|7790_1   4 RQKSPEKARLEAEKQAQLETDERElERHLAEEfsrLQTETEERARQKTPEKARLEAE-----KKAQLE 66 
                 222223333333333333333333333333333222222222222222222222222.....222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|7791_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|7792_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|7793_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|7796_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 159.30
//
Query:       MMETSP1174-20130828|7798_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|7799_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 166.56
//
Query:       MMETSP1174-20130828|7801_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      262  (0.0638713); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 232.92
//
Query:       MMETSP1174-20130828|7802_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1629.02
//
Query:       MMETSP1174-20130828|7803_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|7805_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.66
# Mc/sec: 543.96
//
Query:       MMETSP1174-20130828|7807_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 846.55
//
Query:       MMETSP1174-20130828|7806_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1045.76
//
Query:       MMETSP1174-20130828|7809_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 437.21
//
Query:       MMETSP1174-20130828|7810_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|7813_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-10   36.1   0.0    3.2e-10   36.1   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   7.8e-14   3.2e-10    1183    1225 ..       2      44 ..       1      54 [. 0.91

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 7.8e-14
   TIGR02025 1183 eiskrltntlGWsataeavddWvYdqltetyilDeemrerlae 1225
                  eis+r+t +lGW+at+e+ dd vY+q++e y  D em++  +e
  MMETSP1174-20130828|7813_1    2 EISQRMTSLLGWGATSEFQDDGVYNQAAESYGFDTEMANTRKE 44  
                  8************************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 234.17
//
Query:       MMETSP1174-20130828|7816_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.8   5.8     0.0021   15.4   4.0    1.2  1  TIGR01597 PYST-B: Plasmodium yoelii subtelomeric family PYST-B


Domain annotation for each model (and alignments):
>> TIGR01597  PYST-B: Plasmodium yoelii subtelomeric family PYST-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   4.0   5.2e-07    0.0021      95     172 ..      34     118 ..       5     147 .. 0.64

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.2e-07
   TIGR01597  95 hkerntlldlnnvdkktkklidklqkeleelkkeldnksnde..leiqpihdkiiikk.....dennsvseee..dlkqleneknsv 172
                 ++e ++l  l+ v++k kk +  l++e+e+ k eld  + de    i+  +   ++k      ++n   s  e  +l++l  e n +
  MMETSP1174-20130828|7816_1  34 KREMKSLAALQGVENKFKKKVASLKREIEDQKLELDSYTTDEpiKLIEQSQ--NLLKTtyvfgNNNGDYSSVEeaELRRLLRELNKS 118
                 468899*******************************99987221233333..2333211111333333322223677666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 643.10
//
Query:       MMETSP1174-20130828|7819_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 478.93
//
Query:       MMETSP1174-20130828|7821_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 729.24
//
Query:       MMETSP1174-20130828|7825_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|7828_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|7827_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 813.22
//
Query:       MMETSP1174-20130828|7829_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|7834_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|7835_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 301.10
//
Query:       MMETSP1174-20130828|7838_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|7839_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|7836_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-14   48.5   0.0    8.6e-14   48.0   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    8.6e-11   38.6   0.0    3.7e-10   36.5   0.0    1.8  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.3e-10   38.2   0.1    1.1e-09   35.2   0.0    2.0  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.2e-07   27.9   0.1    4.9e-06   23.4   0.1    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    6.6e-07   26.6   0.0    1.2e-06   25.7   0.0    1.3  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
      2e-06   24.6   0.0    0.00015   18.4   0.0    2.3  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.7e-05   21.2   0.0    2.9e-05   20.4   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
     0.0018   14.4   0.0      0.022   10.8   0.0    2.1  2  TIGR00631 uvrb: excinuclease ABC subunit B
  ------ inclusion threshold ------
      0.012   11.8   0.0       0.02   11.0   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
      0.021   11.2   0.0      0.041   10.3   0.0    1.4  1  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.1e-16   8.6e-14      14     331 ..      97     404 ..      85     449 .. 0.78

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 2.1e-16
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela........akekpk..kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEll.fqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspk 331
                 +++ Q  +++ + +g++ +  a TG+GKTla  lp++ +l+        +++     +   +l ++P + La +++r  e+    ++ +++v +  G ++   + +  +k  di++ Tp  ++  l  k + +l ++++ vv+DE  ++l     d ++L L +   ++++ +++  sAT+    + a++   ++   + ++v      a++ ++ +++      w+   ++++ ++++    ++ + l+F+ t+  +  l   a l+ +++     al Hg + +++Rek  +a+++g++r++vcT     G+D   vdlviq   p 
  MMETSP1174-20130828|7836_1  97 LFEIQSSTFDLIFDGKDVIGRARTGCGKTLAFALPIIERLLirknagtaSDT--AwgRKPAALVLAPTRELAGQVAREFEK----ISSSLSVLTVYGGAPYPPQFEALRKGVDIIVGTPGRIKDHLE-KGTLDLTTRCEFVVLDEADQMLDMGFSDDMDLILEQC--TREGRQTCLFSATMPGWVHTAATKYMRDP-VTIDMVGN---SAVQASTDVRHIAIPAHWQTR-AATMSDTIAMYAGTTGQILIFCETKVDCNDLtMDATLKYEAK-----AL-HGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDM-IVDLVIQNKPPE 404
                 57889999999****************************9987766543333..14578889999****999999998766....55666788899***************************9885.6678899*************************99875..4577788999****887766666555555.33444433...333333333332233567765.556789999999999************975404444444444.....55.8**********************************7.59****976665 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   9.1e-13   3.7e-10      24     204 ..      84     278 ..      66     305 .. 0.77
   2 ?   -0.8   0.0      0.17        69     322     382 ..     369     434 ..     338     439 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 9.1e-13
   TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed............pratalylaPtkalaadqlravkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGv.fGshvalvlrrlrr....lcaryGaePvfllasats 204
                   ++ l+++Gie+ ++ q ++ +l  +G++v+  + t  Gk+la+ lP++++l               ++ +al laPt+ la    r  ++++++    ++y G     + e +r+  ++++  P  +   + +       +  + ++vv+de+ +   + f  ++ l+l +  r     c    + P  + ++at 
  MMETSP1174-20130828|7836_1  84 ATRSSLKKQGIESLFEIQSSTFDLIFDGKDVIGRARTGCGKTLAFALPIIERLLIRknagtasdtawgRKPAALVLAPTRELAGQVAREFEKISSSLSVLTVYGGAPYPPQFEALRKGVDIIVGTPGRIKDHLEKGT---LDLTTRCEFVVLDEADQMLDMgFSDDMDLILEQCTRegrqTCLFSATMPGWVHTAATK 278
                 5577899********************************************99877556666666666699***********************988888999999999999**************99887765554...4577899999999998876553555665555443331111333334446666666665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.17
   TIGR03817 322 eralkdGellgvaatnalelGvdisGldavviaGfPGtva......slwqqaGraGrrgqdalvvlv 382
                  +a+++G+++ +++t+    G+d+  +d v+    P  ++      ++  ++Gr+Gr+g++ + v +
  MMETSP1174-20130828|7836_1 369 IEAFRNGRFRVMVCTDVAARGLDMI-VDLVIQNKPPESRSgkveveTYVHRSGRTGRAGRKGICVTM 434
                 4567788888888888888888875.67777777765443222222678899*******99998865 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.079        32      12      49 ..      95     132 ..      87     141 .. 0.85
   2 !   35.2   0.0   2.6e-12   1.1e-09     210     334 ..     311     441 ..     272     500 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.079
   TIGR01389  12 eeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                 e+  + q +  + + dg+dv++   tG Gk l + +P 
  MMETSP1174-20130828|7836_1  95 ESLFEIQSSTFDLIFDGKDVIGRARTGCGKTLAFALPI 132
                 55566788899999********************9995 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.6e-12
   TIGR01389 210 nkkkqlleylkkereksG..iiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPkn......lesyyqeaGRaGRDGlkaeaillyseaDla 334
                  +   + + + +  +++G  +i+++++ + ++l+    + ++ea a h+ + +++R+++ e+F + + +v+v t     G+d   v  vi  + P++      +e+y   +GR GR G+k  ++++ys++  +
  MMETSP1174-20130828|7836_1 311 TRAATMSDTIAMYAGTTGqiLIFCETKVDCNDLTMD-ATLKYEAKALHGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDM-IVDLVIQNKPPESrsgkveVETYVHRSGRTGRAGRKGICVTMYSPKQRT 441
                 455666777777777777446899999999999765.5679****************************************96.59*********844444449************************97643 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.037        15       8      47 ..      93     132 ..      89     136 .. 0.87
   2 !   23.4   0.1   1.2e-08   4.9e-06     224     341 ..     323     446 ..     271     458 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.037
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpa 47 
                 g es  + q  + + ++ g+d++    tG Gk L + lp 
  MMETSP1174-20130828|7836_1  93 GIESLFEIQSSTFDLIFDGKDVIGRARTGCGKTLAFALPI 132
                 56677788999999**********************9996 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.2e-08
   TIGR00614 224 fkgksG..iiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk......siesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                 + g++G  +i+C ++ ++++++ +   +  +a+a h ++ +++r++  + f +   +v+v t     G++   v  vi  + p       ++e+Y   sGR GR g k  cv +y+p+  + ++ +
  MMETSP1174-20130828|7836_1 323 YAGTTGqiLIFCETKVDCNDLTMDA-TLKYEAKALHGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDM-IVDLVIQNKPPEsrsgkvEVETYVHRSGRTGRAGRKGICVTMYSPKQRTNIQTI 446
                 5555554379***********9885.56789****************************999888999996.58999998877522333469************************9988777654 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.9e-09   1.2e-06     127     307 ..     229     405 ..     208     445 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.9e-09
   TIGR01587 127 vliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielve.enealdlkeekrfenqrisliekdkleeisslerllealkk.ekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisvdvlitelapid 307
                  +++DE++ + +   +  + ++le   + + +  l sAt+p  +++ + k+  +     ++  +  + ++  r + i ++++    ++ + ++ +    +++li++ t    + + +   +   + e   lH+   +  rek     ++ +++   +v+v T v+  +lD+ vd++i +  p +
  MMETSP1174-20130828|7836_1 229 FVVLDEADQMLDMGFSDdMDLILEQCTREGRQTCLFSATMPGWVHTAATKYMRDPvTIDMVGNSAVQASTDVRHIAIPAHWQTRAATMSDTIAMYAGtTGQILIFCET---KVDCNDLTMDATLKYEAKALHGDVPQATREKT----IEAFRNGRFRVMVCTDVAARGLDMIVDLVIQNKPPES 405
                 59*****98777766666***********************88888887765543033333344467788999999************99998887615677777766...44555555555555566789****99999877....99****999*********************9887754 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.01       4.3     287     359 ..     156     222 ..     119     237 .. 0.72
   2 !   18.4   0.0   3.7e-07   0.00015     480     571 ..     347     443 ..     335     454 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.01
   TIGR00643 287 valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekvefkeLa 359
                 ++++aPT  LA Q +++++++ + l  +v  + g   ++    ++e++++G ++++vGT   ++++ e   L 
  MMETSP1174-20130828|7836_1 156 ALVLAPTRELAGQVAREFEKISSSL--SVLTVYG---GAPYPPQFEALRKG-VDIIVGTPGRIKDHLEKGTLD 222
                 5689*************99998874..3333333...33445567888887.899999999999988766554 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.7e-07
   TIGR00643 480 f.pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied..a.eRfG...lsqLHQLRGRvgRgekksyclLvaepkseeak 571
                    k++ + lhg ++++ +e+ +e+Fr+++  ++v+T v   G+d+     +vi++  +  R G   + +     GR gR  +k+ c+ +++pk++++ 
  MMETSP1174-20130828|7836_1 347 AtLKYEAKALHGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDMIV--DLVIQNkpPeSRSGkveVETYVHRSGRTGRAGRKGICVTMYSPKQRTNI 443
                 3379999**************************************854..4555552233588832234444457****************88877654 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-08   2.9e-05     180     345 ..     297     445 ..     225     451 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7e-08
   TIGR01970 180 PveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaerlaa 345
                   ++r+ ++ ++ +   ++   +  + a ++g++L+f   + + + ++   + +l+    e   L+G+++ + ++++i++  +Gr +v+++t++a       G+ +++D   + ++  + +sG   +et  + ++    r+GraGr   G+c+ ++s +q +++++
  MMETSP1174-20130828|7836_1 297 STDVRHIAIPAHWQTRAATMSDTIAMYAGTTGQILIFCETKVDCNDLTM--DATLK---YEAKALHGDVPQATREKTIEAFRNGRFRVMVCTDVAA-----RGLDMIVDLVIQNKPP-ESRSGKVEVET-YVHRS---GRTGRAGR--KGICVTMYSPKQRTNIQT 445
                 5689999999998888888888889999*********999999887764..44566...67789******************************97.....5788899998888874.56666555554.34444...58888888..69*******999776655 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.058        24      55      77 ..     153     176 ..     140     182 .. 0.84
   2 !   10.8   0.0   5.3e-05     0.022     434     509 ..     318     392 ..     303     442 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.058
   TIGR00631  55 kP.tlvlahnktLaaqLyeelkel 77 
                 kP +lvla+ + La+q+++e+ ++
  MMETSP1174-20130828|7836_1 153 KPaALVLAPTRELAGQVAREFEKI 176
                 45279****************876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 5.3e-05
   TIGR00631 434 eeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDl 509
                 + i   + +  ++l+   tk  ++dlt   + l+  +k lh ++    r + i+ +r+g+f v+v  ++   GlD+
  MMETSP1174-20130828|7836_1 318 DTIAMYAGTTGQILIFCETKVDCNDLTM-DATLKYEAKALHGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDM 392
                 5566666677889999999999999985.467889999*************************************8 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.9e-05      0.02     688     727 ..     354     393 ..     345     459 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.9e-05
   TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidip 727
                 +  Hg + +   e+++++F +++f v+vcT +   G+d+ 
  MMETSP1174-20130828|7836_1 354 KALHGDVPQATREKTIEAFRNGRFRVMVCTDVAARGLDMI 393
                 568**********************************974 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001     0.041     303     400 ..     364     454 ..     349     471 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0001
   TIGR00595 303 alealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekpgevliqtvnP.ehpaieaalkedyeaF 400
                 + e+++e+f++g  ++++ t + a+Gld+       +++  +  k p+ R++   ++++   +GR+gRa ++g  +   ++P +++ i+++ k+  ++F
  MMETSP1174-20130828|7836_1 364 TREKTIEAFRNGRFRVMVCTDVAARGLDM-------IVDLVIQNKPPESRSGKVEVETYVHRSGRTGRAGRKGICVTM-YSPkQRTNIQTIEKKTGNSF 454
                 45889*********************996.......44444556789*************************976655.55615677888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 1590.82
//
Query:       MMETSP1174-20130828|7840_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   14.2   3.3     0.0083   13.9   2.3    1.1  1  TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI


Domain annotation for each model (and alignments):
>> TIGR01869  casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.3     2e-06    0.0083      79     171 ..      93     188 ..      79     192 .] 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2e-06
   TIGR01869  79 gaeedkaeaeaakiakglklkkgkkkekelllsapevaalaalaeekfdelaaakeekkavadkelkkkakalleaarlt...gvdiaLfGRmlas 171
                   ++++++++ +++a+  +++ +  ++k +   a ++  l  ++ ++f+e+ a++++++ v +k++k++ ++  + +r t   + +ia +GRml  
  MMETSP1174-20130828|7840_1  93 YLKNKRLQKQRQIVAERRAKEREAEHQKVMARRAAKALRLHGTTDDHFAEAMAMAGKQSRVPKKKKKNVIRHHEKGERPTdidSTKIANSGRMLFR 188
                 445556666666677777777777777777777777778888999**********9999999999999999988888877777889*******966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 724.05
//
Query:       MMETSP1174-20130828|7843_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1174-20130828|7842_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 903.93
//
Query:       MMETSP1174-20130828|7845_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|7844_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1174-20130828|7846_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1174-20130828|7848_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|7854_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|7852_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    4.9  16.7          2    6.2   0.1    4.8  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.32   1.3e+03      21      23 ..       3       5 ..       2       8 .. 0.62
   2 ?    4.3   0.1    0.0019       7.6       4      13 ..      11      20 ..      10      20 .. 0.90
   3 ?   -0.8   0.0     0.071   2.9e+02      19      23 ..      23      27 ..      23      30 .. 0.80
   4 ?    6.2   0.1   0.00048         2       4      14 ..      33      43 ..      32      44 .. 0.92
   5 ?    3.9   0.1    0.0024        10       4      13 ..      55      64 ..      54      64 .. 0.90
   6 ?   -0.8   0.1     0.074     3e+02       4       8 ..      77      81 ..      76      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.32
   TIGR02167 21 VTn 23
                VT+
  MMETSP1174-20130828|7852_1  3 VTD 5 
                776 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0019
   TIGR02167  4 gCssLtsLDl 13
                +CssL +L+l
  MMETSP1174-20130828|7852_1 11 SCSSLHTLNL 20
                7*******97 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.071
   TIGR02167 19 snVTn 23
                s+VT+
  MMETSP1174-20130828|7852_1 23 SQVTD 27
                89998 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.00048
   TIGR02167  4 gCssLtsLDlS 14
                +Cs L++L+lS
  MMETSP1174-20130828|7852_1 33 SCSRLQTLNLS 43
                7*********9 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.0024
   TIGR02167  4 gCssLtsLDl 13
                +C+sL +L+l
  MMETSP1174-20130828|7852_1 55 SCTSLHTLNL 64
                7*******97 PP

  == domain 6    score: -0.8 bits;  conditional E-value: 0.074
   TIGR02167  4 gCssL 8 
                +CssL
  MMETSP1174-20130828|7852_1 77 SCSSL 81
                7***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|7856_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 2366.38
//
Query:       MMETSP1174-20130828|7855_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2778.54
//
Query:       MMETSP1174-20130828|7862_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|7861_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1315.89
//
Query:       MMETSP1174-20130828|7866_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   17.0   0.8    0.00081   16.5   0.5    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5     2e-07   0.00081      27      73 ..     130     181 ..     119     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-07
   TIGR00599  27 lRChvCkdffkaPvltsCsHt.FCslCiRrcLs....eepkCPlCraedqEs 73 
                  RC +C d  +  vl +C+H   C  C  +  s    +  kCPlCr+   E 
  MMETSP1174-20130828|7866_1 130 ERCYICMDAPRDAVLQPCGHGgLCYTCAVSLGSggdpTSVKCPLCRSLTTEV 181
                 49******************648999987766533335679*****988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 933.03
//
Query:       MMETSP1174-20130828|7869_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       484  (0.117991); expected 82.0 (0.02)
Passed bias filter:                      350  (0.0853242); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 392.20
//
Query:       MMETSP1174-20130828|7864_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.8   0.1      0.049   11.0   0.1    1.3  1  TIGR02907 spore_VI_D: stage VI sporulation protein D
       0.03   10.8   0.0       0.28    7.6   0.0    1.9  2  TIGR02734 crtI_fam: phytoene desaturase
      0.034   10.9   0.0      0.056   10.2   0.0    1.3  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR02907  spore_VI_D: stage VI sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.6e-05     0.049      94     144 ..     379     428 ..     377     433 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
   TIGR02907  94 disiPknRvkslddvyveiesFDYdLkeegrlklladisisGlkqeaelda 144
                 +i iP   v   +d+yv++ s   ++  +g + ++ +  i+G+ ++++ld+
  MMETSP1174-20130828|7864_1 379 QIIIPGSQVGRANDIYVSMVSKSLEVVSDGIFLVTVSTRIEGV-SDNPLDE 428
                 689****************************************.9***997 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0002      0.28       1      40 [.      54      93 ..      54      97 .. 0.93
   2 ?    0.8   0.0     0.024        33     211     268 ..     283     340 ..     272     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0002
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvl 40
                ++V+G+G+    l+ +L  +G++v v+++++  GG + +l
  MMETSP1174-20130828|7864_1 54 VCVLGTGFTECLLSGLLCVKGMKVLVVDRNNYYGGESASL 93
                68*********************************88776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.024
   TIGR02734 211 wfprGGtsalvealaklaedlggelrlnaeveeieteg.erataveledgerleadavv 268
                  +p  G++ l+e+  +la+  gg + ln +v+ei  ++ ++a++++ +  e  ++++v+
  MMETSP1174-20130828|7864_1 283 LYPVYGLGGLPESFSRLAAINGGVFMLNRSVDEILFDKdGKAWGIRGD-DEVAKCKLVI 340
                 59999*****************************98884566666555.5888999887 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.1e-05     0.056       2      40 ..      52      90 ..      51     102 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.1e-05
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGnc 40
                +d+ ++G+G++  +l+  l  ++ +vlvv++ n  GG +
  MMETSP1174-20130828|7864_1 52 YDVCVLGTGFTECLLSGLLCVKGMKVLVVDRNNYYGGES 90
                99**********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1712.47
//
Query:       MMETSP1174-20130828|7870_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1174-20130828|7874_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-15   53.1   1.3    6.8e-09   32.0   0.1    2.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      5e-14   50.2   0.1      1e-13   49.2   0.1    1.5  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.6e-08   32.2   0.1      4e-05   21.2   0.0    2.7  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.4e-08   30.8   0.0    8.4e-07   26.9   0.0    2.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    6.2e-07   27.9   0.7      0.012   14.1   0.0    2.8  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    3.5e-05   21.1   0.0    7.9e-05   20.0   0.0    1.5  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00012   18.7   0.0    0.00051   16.6   0.0    1.8  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00012   19.3   0.0     0.0019   15.4   0.0    2.1  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0027   13.8   0.2     0.0065   12.5   0.1    1.6  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.7e-08   4.4e-05     472     527 ..      17      72 ..       8      75 .. 0.92
   2 !   32.0   0.1   1.5e-11   6.8e-09     460     528 ..      74     142 ..      70     162 .. 0.90
   3 ?   -1.2   0.1      0.16        73     717     754 ..     190     227 ..     183     234 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.7e-08
   TIGR02917 472 gaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvla 527
                 g +  g +dl++A+ +++ AL+i+p f+ A+ nL  +  + ++i++A+  +++++ 
  MMETSP1174-20130828|7874_1  17 GNTQYGAGDLSGAEVQYRSALQIAPTFADAACNLGSVLQDLGRIPEAISFYQRAIE 72 
                 7778899*********************************************9986 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 1.5e-11
   TIGR02917 460 kqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlai 528
                 k  + a  y  lg   + +++l +A++++ +AL iep ++ Al+nL  ++ +++n  +A+ r+e+++a 
  MMETSP1174-20130828|7874_1  74 KDGGHADAYFNLGVLQQDQGQLREAQSSYTQALRIEPSHLDALSNLGSVHHAQGNFTEAVVRYEDAIAL 142
                 667789999999****************************************************99975 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.16
   TIGR02917 717 kdykaAiqaykkalkrapssqtvikLaeallasgntae 754
                 k   aA++ay+k l+  p+++ ++ La+  las +   
  MMETSP1174-20130828|7874_1 190 KITRAAVEAYQKTLSCLPGDDPMAALARHALASHKGDS 227
                 44567788888888888888888888887777766555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1   2.3e-16     1e-13      79     193 ..      24     137 ..      18     151 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.3e-16
   TIGR02521  79 gelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                 g+l+ Ae ++r Al+++p  +d+  N G+ L   +++ eA+  +++Aie ++ ++ a++y N+g+ + ++g+  +a+++ t+al+i+p+  ++l +l  ++  +g+ +eA   +e
  MMETSP1174-20130828|7874_1  24 GDLSGAEVQYRSALQIAPTFADAACNLGSVLQDLGRIPEAISFYQRAIEVKDGGH-ADAYFNLGVLQQDQGQLREAQSSYTQALRIEPSHLDALSNLGSVHHAQGNFTEAVVRYE 137
                 68899********************************************999665.89***************************************************988776 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.8e-08     4e-05      23     114 ..      15     107 ..      11     109 .. 0.91
   2 !   10.8   0.0   0.00015     0.067      31      82 ..      92     143 ..      89     154 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 8.8e-08
   TIGR02552  23 alAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaald.lddprpvyhaaecllalgekeeAlkaLklaie 114
                 + + ++y +g+++ Ae  ++   ++ pt a+ +  L+++lq l++  eAi +Y++a  ++   ++++++ +++     g+ +eA++    a++
  MMETSP1174-20130828|7874_1  15 KNGNTQYGAGDLSGAEVQYRSALQIAPTFADAACNLGSVLQDLGRIPEAISFYQRAIEVKdGGHADAYFNLGVLQQDQGQLREAQSSYTQALR 107
                 566789****************************************************98678999******999999999999988777766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00015
   TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaald 82 
                 qg+++eA+  ++    ++p   + +  L+++++a+++++eA+  Y+ a al 
  MMETSP1174-20130828|7874_1  92 QGQLREAQSSYTQALRIEPSHLDALSNLGSVHHAQGNFTEAVVRYEDAIALL 143
                 89999999999999999****************************9988774 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.8e-09   8.4e-07      38     169 ..     285     451 ..     263     465 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.8e-09
   TIGR02072  38 vLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....................nvqficgdieklplekks......fDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv.........ea.hglrflsleelkallkk 169
                  Ld+GcGtG++   l+ + +q     +D+s em  +ak+ +                       ++f+ g+   l  +  s      +Dl+v++ ++  + dl+ v+++++++l+p+G +afs+   +t +E + l ++          +   + rf + +e+ ++l++
  MMETSP1174-20130828|7874_1 285 TLDAGCGTGLMGPLLRGMTSQL--AGVDLSSEMVLRAKSLECyddlrvddicdymslltsqntGDSFVTGQDPPLHPASTStdrflpLDLVVAADVFVYMGDLEPVFKRANEALEPKGWFAFSSERIDTNHEAEGLSETSssvapaaswKLqTSGRFAHSKEYLEWLAE 451
                 69*******9999999888776..9*************98889999999999999999988876778877766666555557889999************************************999988887777765444455555433355566666666666655 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00019     0.088      43     102 ..      14      70 ..       7      73 .. 0.88
   2 !   14.1   0.0   2.6e-05     0.012      38     104 ..      78     141 ..      74     153 .. 0.89
   3 ?   -2.4   0.1       3.4   1.6e+03      55     106 ..     192     244 ..     184     254 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
   TIGR02795  43 YwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqev 102
                 +  G+++y +++++ A+ +++++++  p+    +da  +lg++lq+lg+  +A + +q+ 
  MMETSP1174-20130828|7874_1  14 FKNGNTQYGAGDLSGAEVQYRSALQIAPT---FADAACNLGSVLQDLGRIPEAISFYQRA 70 
                 778**********************6665...6789999***************999975 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.6e-05
   TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevik 104
                  ++A++ lG ++  ++++++A+ ++ ++++  p++    dal +lg++  ++g+ ++A   +++ i+
  MMETSP1174-20130828|7874_1  78 HADAYFNLGVLQQDQGQLREAQSSYTQALRIEPSH---LDALSNLGSVHHAQGNFTEAVVRYEDAIA 141
                 589**************************987776...599*****************999998765 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.4
   TIGR02795  55 ykdAakaflevvkkyp.ksekapdallklgeslqelgqkekAkktlqevikrY 106
                 +++A +a+++ ++  p +++ a+ a   l++   ++  +++A ++ + + + Y
  MMETSP1174-20130828|7874_1 192 TRAAVEAYQKTLSCLPgDDPMAALARHALASHKGDSSISTAAPEYVSALFDGY 244
                 56677777777776652334444455555555555555555555555555555 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.7e-07   7.9e-05      58      94 ..     285     321 ..     270     342 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.7e-07
   TIGR02021  58 vlDAGCGtGllsielAkrGaivkavDiseklvelark 94 
                  lDAGCGtGl+   l     +  +vD+s ++v  a++
  MMETSP1174-20130828|7874_1 285 TLDAGCGTGLMGPLLRGMTSQLAGVDLSSEMVLRAKS 321
                 59******************************98875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06   0.00051     433     575 ..      10     146 ..       1     150 [. 0.71

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
   TIGR00990 433 ifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelk.pisvnvlPlinkalalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklferaaelarte 575
                  fs  + + +qy  g +  +e  +r a +  p   d     + +l d     ea+  +  aie+ +  +   + n+        +l + + +  ea+    +al+++P    a   l  +   q++ +ea+  +e+a  l   e
  MMETSP1174-20130828|7874_1  10 AFSCFKNGNTQYGAGDLSGAEVQYRSALQIAPTFADAACNLGSVLQDLGRIPEAISFYQRAIEVKDGGHaDAYFNL-------GVLQQDQGQLREAQSSYTQALRIEPSHLDALSNLGSVHHAQGNFTEAVVRYEDAIALLSSE 146
                 5777777888888888888888888888888888888888888888888888888888888887665431344443.......3456667777788888888888888888888888888888888888888888877665554 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.1e-06    0.0019      53     101 ..     285     332 ..     264     349 .. 0.85
   2 ?    1.5   0.0     0.071        32     117     152 ..     370     405 ..     360     418 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.1e-06
   TIGR01983  53 vlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkiey 101
                  lD GcG Gl+   l  +  +  g+Dls+e++  Ak+ +  d+l+ ++ 
  MMETSP1174-20130828|7874_1 285 TLDAGCGTGLMGPLLRGMTSQLAGVDLSSEMVLRAKSLECYDDLR-VDD 332
                 49**********999999999***************998888875.554 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.071
   TIGR01983 117 fDvvlamEvlEHvadleeilkecaellkpggilfls 152
                  D+v+a +v   + dle + k++ e l+p+g+  +s
  MMETSP1174-20130828|7874_1 370 LDLVVAADVFVYMGDLEPVFKRANEALEPKGWFAFS 405
                 599*****************************9888 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   1.4e-05    0.0065      94     183 ..      52     142 ..      20     172 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
   TIGR03939  94 kAaRnekqwdkAlelyrkllq.rdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrl 183
                 + + ++++ ++A+++y+++++ +d   +d+   l   + d+g+  eA++  +++   +ps+ + l++l+ v  a+++ ++a  ++++a++l
  MMETSP1174-20130828|7874_1  52 SVLQDLGRIPEAISFYQRAIEvKDGGHADAYFNLGVLQQDQGQLREAQSSYTQALRIEPSHLDALSNLGSVHHAQGNFTEAVVRYEDAIAL 142
                 4444555556666666666554566666666666666666666666666666666666666666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1280.29
//
Query:       MMETSP1174-20130828|7873_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 195.71
//
Query:       MMETSP1174-20130828|7875_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1129.24
//
Query:       MMETSP1174-20130828|7877_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 567.55
//
Query:       MMETSP1174-20130828|7878_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-49  166.4   0.5    2.1e-49  166.3   0.3    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      1e-46  157.6   0.4    1.2e-46  157.4   0.3    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.5e-41  138.7   0.1      5e-41  138.6   0.1    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    8.3e-39  131.2   0.1      9e-39  131.1   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    2.1e-38  129.8   0.3    2.4e-38  129.7   0.2    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.9e-37  124.6   0.1    1.1e-36  124.5   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.4e-35  119.5   0.6      4e-35  119.3   0.4    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      2e-32  110.4   0.0    2.4e-32  110.1   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-31  108.2   1.1    1.3e-31  108.0   0.8    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.4e-31  105.4   0.3    6.3e-31  105.2   0.2    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.5e-27   93.5   1.3    2.8e-27   93.4   0.9    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      3e-27   93.2   0.4    3.7e-27   92.9   0.3    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.7e-20   71.2   0.1      2e-20   71.0   0.1    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.6e-20   70.8   0.0    2.9e-20   70.6   0.0    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.8e-20   69.3   0.0    3.2e-20   69.0   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.2e-20   70.4   0.1    3.9e-20   70.1   0.0    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    9.6e-20   68.8   0.0    1.1e-19   68.6   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.1e-19   68.5   0.0    1.4e-19   68.2   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.6e-19   66.5   0.1    5.7e-19   66.2   0.1    1.1  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      6e-19   66.3   0.1    7.5e-19   66.0   0.1    1.1  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-18   65.4   0.1    1.4e-18   65.1   0.1    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.8e-18   64.8   0.4    2.1e-18   64.6   0.3    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.9e-18   64.4   0.1    2.1e-18   64.3   0.0    1.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.5e-18   64.2   0.5      3e-18   64.0   0.3    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.6e-18   64.1   0.0    2.8e-18   64.0   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.7e-18   63.2   0.1    4.7e-18   62.9   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    1.5e-17   61.5   0.2    1.8e-17   61.3   0.1    1.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.6e-17   60.3   0.2    3.9e-17   60.2   0.1    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    9.2e-17   59.2   0.1    1.1e-16   58.9   0.1    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.3e-16   57.9   0.0    2.8e-16   57.6   0.0    1.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.7e-16   55.7   0.1      1e-15   55.4   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.5e-15   54.5   0.2      3e-15   54.3   0.2    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.9e-15   54.0   0.1    4.9e-15   53.7   0.1    1.1  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    4.7e-15   52.0   0.0    5.7e-15   51.7   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.4e-15   53.1   0.1    8.1e-15   52.8   0.0    1.1  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      1e-14   52.4   0.1    1.3e-14   52.1   0.0    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.6e-14   51.5   0.1    2.2e-14   51.1   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.7e-14   51.0   0.1    3.3e-14   50.7   0.1    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.9e-14   50.3   0.1    3.5e-14   50.1   0.0    1.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.7e-14   50.0   0.1    7.2e-14   49.9   0.1    1.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.7e-13   48.4   0.0    2.2e-13   48.0   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.4e-12   45.4   0.0    1.8e-12   45.0   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.1e-12   41.8   0.0    7.2e-12   41.6   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.5e-10   39.0   0.0    1.8e-10   38.7   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-09   35.5   1.0    1.4e-09   35.2   0.7    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
      2e-09   34.3   0.1    2.2e-09   34.1   0.1    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.2e-09   34.9   0.2    3.3e-09   34.3   0.2    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.1e-08   32.8   0.1    1.3e-08   32.5   0.0    1.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.2e-08   32.7   0.1    1.7e-08   32.2   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.5e-08   32.2   0.0    1.7e-08   32.0   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    3.9e-08   30.9   0.0    4.4e-08   30.8   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      4e-08   30.1   0.0    4.7e-08   29.9   0.0    1.0  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    4.8e-08   28.1   0.0    5.6e-08   27.9   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    1.9e-07   27.5   0.0    2.3e-07   27.2   0.0    1.0  1  TIGR00630 uvra: excinuclease ABC subunit A
    2.3e-07   27.6   0.0    2.6e-07   27.4   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.3e-07   28.0   0.1    4.1e-07   27.7   0.1    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.9e-06   24.5   0.0    2.3e-06   24.2   0.0    1.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
  ------ inclusion threshold ------
      0.016   10.7   0.1      0.022   10.3   0.0    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.3     3e-51   2.1e-49     438     569 ..       5     139 ..       1     142 [. 0.94

  Alignments for each domain:
  == domain 1    score: 166.3 bits;  conditional E-value: 3e-51
   TIGR02203 438 aeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl..mkgRttlviahRLstiekaDrivvlddGkiverGtheeLla.rnGlYasLhkiq 569
                   v +a++aa l  l+  lp+G++t+vGe+g kLsGG +qR+aiaRallkdaP+L+ DeatsaLD+  e ++   L r    kgRtt++iahRLst  +aD+i+vld+G++ e+Gth+eL+   nG Y +L  +q
  MMETSP1174-20130828|7878_1   5 SAVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAasKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYRELWLMQ 139
                 67999***********************************************************************98633689***********************************98637*******9998 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.3   1.7e-48   1.2e-46     442     573 ..       3     137 ..       1     139 [. 0.92

  Alignments for each domain:
  == domain 1    score: 157.4 bits;  conditional E-value: 1.7e-48
   TIGR02204 442 sdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLia.kggLyarlar 573
                  + +v aa +aa  d++i+ lp+G +t++Gerg++LsGG kqr+aiara+lkdap+L+ deatsaLd+ +e  + + l ++   kgrtt++iahrL+t ++ad+i+vld Gr+ eqGth+eL+   +g y++l  
  MMETSP1174-20130828|7878_1   3 PASAVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAAskKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYRELWL 137
                 567899999*******************************************************************9987652279***********************************98626888988865 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.1     7e-43     5e-41     563     692 ..       7     139 ..       1     141 [. 0.89

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 7e-43
   TIGR01846 563 viaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqq 692
                 v aa   a    +i  l++G et+vge+G +lsGG +qr+a+aral+++  +l+ deatsald  +ea imr+l++ +  kgrt ++iahrlst  +ad+i+vl+ G++ e+G+h el+   +g+y +l+  q
  MMETSP1174-20130828|7878_1   7 VDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAAskKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMLpNGKYRELWLMQ 139
                 3344444445558*************************************************************8764348*************************************9988********988 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.0   1.3e-40     9e-39     584     710 ..       4     135 ..       1     136 [. 0.93

  Alignments for each domain:
  == domain 1    score: 131.1 bits;  conditional E-value: 1.3e-40
   TIGR00958 584 deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykql 710
                    v aa  aa+ +  i +l++g++t+vge+G  lsgG kqr+AiARAL+++  vL+ DeAtSALD+    e+ + l +  s+k+rt ++iahrLst+ +adki+vl  g+v e+Gth++Lm  ++  y++l
  MMETSP1174-20130828|7878_1   4 ASAVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTvteaEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMLPNgKYREL 135
                 56789999***********************************************************8877777888889*****************************************98765577665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.2   3.3e-40   2.4e-38     581     708 ..       3     135 ..       1     137 [. 0.93

  Alignments for each domain:
  == domain 1    score: 129.7 bits;  conditional E-value: 3.3e-40
   TIGR03796 581 peedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarL 708
                 p +++  A+  A+++  i  +p+g e+++ e g  lsGG++qR+ iARaL k+  +L+ DEatsaLD+ tE +i+++l r    +g t++++aHRLst   +d+iivl+ G+v e+GtH el+   +g+Y++L
  MMETSP1174-20130828|7878_1   3 PASAVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRaaskKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYREL 135
                 56778899999*****************************************************************9975444489************************************98679***998 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   1.5e-38   1.1e-36     441     566 ..       7     135 ..       1     144 [. 0.86

  Alignments for each domain:
  == domain 1    score: 124.5 bits;  conditional E-value: 1.5e-38
   TIGR01192 441 vveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdai..dalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliq.kdgrfakl 566
                 v +a  aa+   +i    +g +t+vgerg +lsgge+qr+aiara+lk+ap+l+ deatsald  tea +   +   a +k rtt++iahrlst  +ad ++ ld gr+ e+g+ +el+   +g++ +l
  MMETSP1174-20130828|7878_1   7 VDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLtrAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYREL 135
                 444555566666899999*************************************************998665522466789***********************************976268888776 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.4   5.6e-37     4e-35     559     681 ..       8     135 ..       2     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 119.3 bits;  conditional E-value: 5.6e-37
   TIGR03797 559 weaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv....tRiviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfael 681
                  +a++ a l+  i+ +P g+ T + e g +lSGG +QR+ iAral +   +l+ DEATSALD  t a ++  l + +     t ++iAHRLST ++ad+i+vl++Grv eqG+++eL+   +G + el
  MMETSP1174-20130828|7878_1   8 DAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASkkgrTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYREL 135
                 457788899999**********************************************************99987653223388*********************************98568888876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   3.4e-34   2.4e-32     580     705 ..       6     135 ..       2     138 .. 0.92

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 3.4e-34
   TIGR01193 580 eikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvahrlsvakksdkiivldeGkiieqGshkellk.enGfyasl 705
                  +++a++ a ++  i+ lp G +t++ e + ++sgG kqr+a+arall d+ vl+ de+ts ld++te  i+ +l +   k   t +++ahrls + ++dkiivld G++ eqG+h+el+   nG y++l
  MMETSP1174-20130828|7878_1   6 AVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKkgrTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMMlPNGKYREL 135
                 67889999999999*************************************************************9875543449*********************************975279999988 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.8   1.8e-33   1.3e-31     423     529 .]       2     110 ..       1     110 [. 0.96

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 1.8e-33
   TIGR02857 423 aseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivvl 529
                 a +++v++a+++a+ld l++ lp+g+et++Gerg +LSgG++qR+a+Arall+dap+l+ DE t++LD  teae+++ l ++a  +grt++++aHrl++  +adki+vl
  MMETSP1174-20130828|7878_1   2 APASAVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAAskKGRTTMMIAHRLSTCMHADKIIVL 110
                 567899*************************************************************************99987899*******************986 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.2   8.9e-33   6.3e-31     573     689 ..       7     125 ..       2     131 .. 0.94

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 8.9e-33
   TIGR03375 573 llraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevl 689
                 + +a+++a ++ +++  p+G+++++gerG +LSgG +q va+aRallkd p+l+ DE tsalD+ +e+++++ L ++++  ++T ++++Hr s    +d+iivld Gr+  +G++ e++
  MMETSP1174-20130828|7878_1   7 VDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASkkGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELM 125
                 5578899999****************************************************************999876799******************************998765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.9     4e-29   2.8e-27     440     530 .]       6      98 ..       1      98 [. 0.94

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 4e-29
   TIGR02868 440 ellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                  + aa++++ L  ++r LpdG++tk+ge+g  lSGGe+qR+a+ARaLl+dapvl+ DE t  LD  te+e+++dL   a ++grt+++++hrl
  MMETSP1174-20130828|7878_1   6 AVDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTraASKKGRTTMMIAHRL 98 
                 678899*********************************************************************9766788999******96 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.3   5.2e-29   3.7e-27     424     541 ..       7     125 ..       2     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 5.2e-29
   TIGR01842 424 vieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 v +a  +a    li  lp+G +t++ge+G +LsgG +qR+a+aRal  d  +++ De  + LD+  e+ +++ l+++  ++++t+++i+hr s    +dki+vl++G++++ G+++e++
  MMETSP1174-20130828|7878_1   7 VDAAISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAaSKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELM 125
                 445556777888*************************************************************9875268899*******************************99875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   2.9e-22     2e-20     124     221 ..      36     132 ..       3     140 .. 0.92

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 2.9e-22
   TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhet 221
                  +lsGG  qRv ia all +ap+l+ De t++lD v++ae+++ l++  +k+g + ++i+h l+     ad+++v+++G++ e+gt  el+  P+ ++
  MMETSP1174-20130828|7878_1  36 LKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTC-MHADKIIVLDAGRVSEQGTHRELMMLPNGKY 132
                 68*************************************************************976.67***********************999877 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   4.1e-22   2.9e-20     125     223 ..      31     128 ..      14     144 .. 0.91

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 4.1e-22
   TIGR02142 125 leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                 +  +  kLsGGekqRvai+RAlL +  +L+ De  +aLD+   +ei+  L r +++     ++++H l+   + ad+++vl++Grv+ +g+  e++  +
  MMETSP1174-20130828|7878_1  31 VGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLP 128
                 5556679**************************************************************9887.9******************998765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   4.6e-22   3.2e-20     734     850 ..      11     126 ..       4     141 .. 0.73

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 4.6e-22
   TIGR00957 734 leacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelld 850
                 + a +l   +  lp g +t++ge+g++lsgg+kqrv++ara+  da + + d+  sa+d+     i+ ++       k++t ++++h +s    +d iivl  g++se g+++el+ 
  MMETSP1174-20130828|7878_1  11 ISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLT-RAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMM 126
                 44555555556688888888888888888888888888888888888888888888888877777777654.445578888888888888888888888888888888888888764 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   5.5e-22   3.9e-20     135     233 ..      27     124 ..      13     127 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 5.5e-22
   TIGR02315 135 laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                 ++ +  +r  +LsGG++qRvaiaRal++++ ++++DE +++LD  +  ++m++l r + +kg t+++  H+++  + +ad+i+ l ag++  +g+ +el
  MMETSP1174-20130828|7878_1  27 VETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGTHREL 124
                 56667789999*************************************************************9886.7***********9877777665 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.6e-21   1.1e-19     129     230 ..      37     137 ..      26     146 .. 0.94

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.6e-21
   TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyveefi 230
                 +lsGG +qrv +aral  + ++l+ dea sald ++  e+  +l +  +k  +t ++i+h l   ++ +d+i++l aG +   Gt  e+++ P  +y e ++
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNGKYRELWL 137
                 79*************************************************************9997.9*************************99988665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0     2e-21   1.4e-19     139     234 ..      36     130 ..      22     138 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2e-21
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpkt 234
                   lsgg+kqrvaiaral  +  vl+cdeatsald  t   i+  l     + g t ++i+h +    +  d++ v+d g++ e+gt  e++  p+ 
  MMETSP1174-20130828|7878_1  36 LKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNG 130
                 579************************************************************98765.79****************999988875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   8.1e-21   5.7e-19     127     206 .]      30     110 ..      24     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 8.1e-21
   TIGR03608 127 klkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtHdpevaekadrviel 206
                 k  ++  +lsgGekqRva+ar+llk++++++ DE t++LD+ +++e+++ l+    ++g+t +++ H  +   +ad++i l
  MMETSP1174-20130828|7878_1  30 KVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRaASKKGRTTMMIAHRLSTCMHADKIIVL 110
                 55566679****************************************8776516789********************975 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.1   1.1e-20   7.5e-19     128     211 ..      37     119 ..      23     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.1e-20
   TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                 +lsGG++qrva+ar l+++ p+l+ de  sald     e++  +++ a++k +t ++++h+ls  +  a++++v++ G+++ ++
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQG 119
                 79************************************************************9876.69***********9876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1     2e-20   1.4e-18     134     229 ..      37     131 ..      23     134 .. 0.94

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2e-20
   TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatk 229
                 +lsGG +qrva+aral     +L+ De  saLD    +++ ++l +   k g tt+m++h     +  aD+i+v+++g+++  gt +e+   P+ k
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNGK 131
                 79**********************************************************9998875.9*******************99988766 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.3     3e-20   2.1e-18     130     219 ..      26     115 ..      12     116 .. 0.95

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 3e-20
   TIGR02982 130 gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 g+e ++  +  +lsgG kqrvaiaral +   +++ de t+ald+ +  e++  l++ a ++g t ++++h       ad+i+ ++ G++
  MMETSP1174-20130828|7878_1  26 GVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRV 115
                 567788888899****************************************************************************97 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0     3e-20   2.1e-18     136     240 ..      27     130 ..       8     139 .. 0.91

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 3e-20
   TIGR03005 136 ladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpke 240
                 +  k  +   +lsGG+kqrvaiaral     vl+ de+tsald     e++  l r as++  t ++++h++      ad+++ +d G++ e+G   e++  p+ 
  MMETSP1174-20130828|7878_1  27 VETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGTHRELMMLPNG 130
                 55667777789*************************************************************9876.69******************99988865 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   4.2e-20     3e-18     123     221 ..      28     126 ..      16     138 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 4.2e-20
   TIGR03864 123 aeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaa 221
                 + +  e+  +L+GG+++rv iarall +  +L+ Deat  LD+ + a++++++ + + ++g + +   h +    ++d+++vl+ G+v  qG+ +el+ 
  MMETSP1174-20130828|7878_1  28 ETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELMM 126
                 5677788889**************************************************************************************986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0     4e-20   2.8e-18     129     240 ..      22     134 ..       5     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 4e-20
   TIGR00972 129 alwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL.kkk.ytivivthnmqqaarvsdktaffleGelveegeteqifekpkekkte 240
                 +l d v++k+ + +l+LsGG +qr++iaral  +  vl+ De tsaLD ++ ++i   ++   +kk  t +++ h ++  ++ +dk++++  G++ e+g+ +++++ p+ k  e
  MMETSP1174-20130828|7878_1  22 GLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAaSKKgRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNGKYRE 134
                 799************************************************999976555441333589999*****98775.8********************9999877655 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   6.6e-20   4.7e-18     149     255 ..      22     125 ..      14     129 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 6.6e-20
   TIGR00955 149 gLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkla.qkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                 gL +  +t++g  g    lSgGe++R+a+a  ll+d ++L+cDE Ts LD ++ a++++ L + a +kg+t ++  H  s  +    dkii+l+ Grv  +G+ +e++
  MMETSP1174-20130828|7878_1  22 GLPDGVETKVGERGL--KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAAsKKGRTTMMIAHRLSTCMH--ADKIIVLDAGRVSEQGTHRELM 125
                 677888999**7775..8****************************************9997765278*********9998765..5************999988765 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   2.5e-19   1.8e-17      97     196 ..      34     132 ..      26     139 .. 0.93

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 2.5e-19
   TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanef 196
                 +  +lsGG +qrva+ara+ k   +L+ De+ saLD     ++  +l +   k G t+++++h  +  +  +d+i vl  G++   g+ +e+   P+ ++
  MMETSP1174-20130828|7878_1  34 RGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGTHRELMMLPNGKY 132
                 5678***********************************************************999888.59**********************999988 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   5.5e-19   3.9e-17     137     225 ..      37     125 ..       5     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.5e-19
   TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                  lsGGe+qrv +aral ++  +l+ de t  ld  +  e+++ +   a ++g t+++  h l+   + +d+++vld+Grv   G+ +e++
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAAsKKGRTTMMIAHRLSTC-MHADKIIVLDAGRVSEQGTHRELM 125
                 59**************************************9866555427889999999***976.579***************999875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   1.6e-18   1.1e-16     126     213 ..      26     113 ..      22     114 .. 0.85

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.6e-18
   TIGR02673 126 gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserild.llkelnkrGttvivathdeelvervkkrvlelekg 213
                 g+e k+ +   +lsgGe+qRvaiaRa++++ ++l+ De t  lD  ++++i++ l ++++k+G t ++ +h  + + + + +++ l++g
  MMETSP1174-20130828|7878_1  26 GVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRdLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAG 113
                 567788888899****************************************7255667899*********9887654.4567777766 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   3.9e-18   2.8e-16     148     239 ..      35     125 ..      20     136 .. 0.89

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 3.9e-18
   TIGR02769 148 PrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaell 239
                   +lsGG  qr++iaral  +  +++ dea s ld v  a+i++ l++   + G + ++i+h l+     a++++vld G++ e+ +  el+
  MMETSP1174-20130828|7878_1  35 GLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGTHRELM 125
                 5689************************************************************9875.69***********9998776665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.5e-17     1e-15     164     261 ..      37     133 ..      19     141 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 1.5e-17
   TIGR03415 164 elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyv 261
                  lsGG +qrv +ara+  +a++l+ de  sald +  a++  +l +  +k  +t ++++h l   ++  ++i +++ Gr+  +gt +e+++ P+ +y 
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNGKYR 133
                 59**************************************************************998.58999*********************9995 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.2   4.3e-17     3e-15     111     200 ..      34     122 ..      23     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 4.3e-17
   TIGR01184 111 rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeil 200
                 r  +lsgg kqrvaiaral     +l+ de   ald++t  e+  +l + + ++  t++m++h +    + +d++++l +g  ++ g   
  MMETSP1174-20130828|7878_1  34 RGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTC-MHADKIIVLDAGRVSEQGTHR 122
                 5668************************************************************9865.689*********999888644 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   6.9e-17   4.9e-15     127     215 ..      26     114 ..      22     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 6.9e-17
   TIGR00960 127 GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdile.lleevnraGttvlvathdenlveskrkrvltlskGk 215
                 G++ k  +   +lsgGe+qrvaiara++++ ++l+ de t+ ld  +  +i++ l +   ++G t ++ +h  +   +   ++++l+ G+
  MMETSP1174-20130828|7878_1  26 GVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRdLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGR 114
                 667777888899****************************************7355667899*******998776554.45677777776 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   8.1e-17   5.7e-15     521     635 ..      10     125 ..       6     134 .. 0.90

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 8.1e-17
   TIGR01271 521 vikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank..trilvtsklehlkkadkilllhegscyfygtfselq 635
                  i a  l+  i  l++  +t +ge g+ lsgg++ r+++ara+ kda + + d   s ld vte ei+   l +  ++k  t ++++ +l    +adki++l  g     gt  el 
  MMETSP1174-20130828|7878_1  10 AISAACLDGLIRGLPDGVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRD-LTRAASKKgrTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELM 125
                 5778889999999******************************************************965.666666662266899*********************9999999985 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.1e-16   8.1e-15     130     225 ..      37     131 ..      28     140 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.1e-16
   TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepata 225
                 +lsGG++qrva+aral  +  vl+ de  +ald+    e+ + l +   +   tt++++h  +  ++ ad+i+vl+ G++ + g+  e++  p  +
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRELMMLPNGK 131
                 79************************************************************99997.9*******************99888765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   1.8e-16   1.3e-14     131     220 ..      27     116 ..      22     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 1.8e-16
   TIGR02211 131 lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                 +e ++ ++  +lsGGe+qrvaiaral+++  ++++de t+ ld+ t  +i++ l++  ++k+ + ++++h l+   ++d+ + l  g++ 
  MMETSP1174-20130828|7878_1  27 VETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVS 116
                 6788899999***********************************99999999999999999999999*************999999875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.2e-16   2.2e-14     138     236 ..      37     133 ..      27     146 .. 0.89

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 3.2e-16
   TIGR03258 138 qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfv 236
                 +lsGG +qrva+aral  +  vl+ de  sald+   a+++ +l +   +    t ++++h r  + + adki ++  G++ ++G+ r+l   p  ++ 
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTT-MMIAH-RLSTCMHADKIIVLDAGRVSEQGTHRELMMLPNGKYR 133
                 79********************************************999987766.56777.5566789*********************999988775 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   4.6e-16   3.3e-14     124     212 ..      37     125 ..      26     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 4.6e-16
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrrai.wdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212
                 ++sgG ++r+ +a++l+++  vl  DE t+ LD+ t ++i  dl ++  k+g t+++ +h l    + ad+++++d G++  ++t +eL 
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEImRDLTRAASKKGRTTMMIAHRLSTC-MHADKIIVLDAGRVSEQGTHRELM 125
                 68********************************99988725778888888***********976.78******************9995 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.9e-16   3.5e-14     168     257 ..      37     125 ..      27     136 .. 0.92

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.9e-16
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpkt.aklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevv 257
                 +lsGGekqrv +ar l k+  +l+ de t +ld  t a+++ +  ++a k+   +++++   +  ++  +dk i+l+ G + e+G+  e++
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTeAEIMRDLTRAASKKGRTTMMIAHRLSTCMH--ADKIIVLDAGRVSEQGTHRELM 125
                 69*******************************98868999999999999999*****999999997..8****************98875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1     1e-15   7.2e-14     113     199 ..      37     124 ..       5     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1e-15
   TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsq.ellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdql 199
                 +lsGG++qrv +aral  +  +l+ de  + ld+ ++ e + +l ++ +++g++ +m +h l+  +++ + +vl  grv  +g+  +l
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEaEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHREL 124
                 69*******************************9875388999************************999999999999999887766 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.1e-15   2.2e-13     127     219 ..      33     124 ..      22     128 .. 0.94

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.1e-15
   TIGR03410 127 RrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                  rg +LsGG +q +aiaRaL+++  +l+ De t  +     +ei + +++ a++k+ + +++ + l+ +++ ad+++vl+ G+v ++g+++el
  MMETSP1174-20130828|7878_1  33 ERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHREL 124
                 57889**************************************************************9998.***************998775 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   2.6e-14   1.8e-12     150     208 ..      38      97 ..      34     110 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 2.6e-14
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLda.anrkvvvelikeakargaaligifhd 208
                  sGGekqRv iaral++d P+L+ de t++Ld+ ++ +++++l + a ++g + + i h 
  MMETSP1174-20130828|7878_1  38 LSGGEKQRVAIARALLKDAPVLMCDEATSALDTvTEAEIMRDLTRAASKKGRTTMMIAHR 97 
                 69******************************8345678899999999999999999995 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0     1e-13   7.2e-12     192     294 ..      21     120 ..      10     126 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1e-13
   TIGR00956 192 yGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGk 294
                  GL    +tkvG+  ++ +sGGe++Rv+ia +l+ +a +++ D+at  LD+ t  e+++ l   a+    t+++ ++  s  ++   dk++vl++G+   +G+
  MMETSP1174-20130828|7878_1  21 RGLPDGVETKVGERGLK-LSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMH--ADKIIVLDAGRVSEQGT 120
                 5888999*****96655.7*******************************************************9999998776..5*********9877776 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.6e-12   1.8e-10     123     207 ..      36     120 ..      23     127 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 2.6e-12
   TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqe.lreliksfpekGitvilsshilsevelladhiGiiseGklkyekk 207
                  ++s G kqr+ ia all++  +l+ de t  ld +   e +r+l ++ ++kG t ++ +h ls   + ad+i ++  G++  ++ 
  MMETSP1174-20130828|7878_1  36 LKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEiMRDLTRAASKKGRTTMMIAHRLSTC-MHADKIIVLDAGRVSEQGT 120
                 57899******************************9877737**********************87.569*********9988765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.7     2e-11   1.4e-09     125     218 ..      27     120 ..      11     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2e-11
   TIGR01288 125 leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerl.rsllargktilltthlmeeaerlcdrlcvleagrkiaegr 218
                 +e+k   r  +lsgg k+r+++aral++d  +l+ de t+ ld  +   i   l r+   +g+t ++ +h +  +    d++ vl+agr   +g 
  MMETSP1174-20130828|7878_1  27 VETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLtRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGT 120
                 57888889999*********************************9987776555399999**********998775.68*********9776665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   3.2e-11   2.2e-09     141     218 ..      37     114 ..       9     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 3.2e-11
   TIGR02633 141 dlGlGqqqlveiakalnkqvrllildepsasl.teketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218
                 +l +G++q v ia+al k + +l+ de +++l t +e ei+ d+ r   +kg + + i+h+l      +d+i v+  G+
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALdTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCM-HADKIIVLDAGR 114
                 455677777777777777777777777777775567777777777777777777777777776554.357776666554 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2   4.6e-11   3.3e-09     127     186 ..      37      97 ..      26     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 4.6e-11
   TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpaGaeqll.eilrklreeGktvvisthd 186
                 +lsgGek+rvaia a+   + vl+ de t+ ld+  + +++ ++ r   ++G+t ++ +h 
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMrDLTRAASKKGRTTMMIAHR 97 
                 69*******************************988766650566677899**99999985 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.9e-10   1.3e-08     141     233 ..      37     135 ..      26     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.9e-10
   TIGR02323 141 afsGGmqqrlqiarnlvtr.prlvfmeptGGl.vsvqarll..llrglvrelglaviivthlavarllaqrllvmkqGrvvesGltrvl...pkhpytql 233
                 ++sGG +qr+ iar+l+   p l+  e t  l    +a ++  l+r+  +  g ++++++h   + + a++++v+  Grv e+G  r l   p+  y +l
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDaPVLMCDEATSALdTVTEAEIMrdLTRAASK-KGRTTMMIAHRLSTCMHADKIIVLDAGRVSEQGTHRELmmlPNGKYREL 135
                 68*************99762556666******555578888766666555.78889999996677899****************9864433488878766 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.4e-10   1.7e-08     127     186 ..      37      97 ..      26     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.4e-10
   TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGi.vllathq 186
                 +Ls G k+R+a+ar ll+ ap+ + DE t alD+ + + +++ l+  +++ G  +++ +h 
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRtTMMIAHR 97 
                 69********************************998888887777777666515555554 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.4e-10   1.7e-08     145     232 ..      38     124 ..      26     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.4e-10
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdvela 232
                  sGGek+r  i + +l +  + + De+ s lD  +   +++ + + +++  +++++i+h  rl   ++ d++ vl +Gr+ ++G    +
  MMETSP1174-20130828|7878_1  38 LSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKkGRTTMMIAH--RLSTCMHADKIIVLDAGRVSEQGTHREL 124
                 69***********9999999************999999999998888775889999999..8999*******************86544 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   6.2e-10   4.4e-08     133     221 ..      37     126 ..      20     140 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.2e-10
   TIGR03522 133 alskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revikeiak.dktvilsthimqevealcdrviiinkGkivadkkleelka 221
                 +ls G +qrv +a+all d  vl+ de t+ ld     ei r++ +  +k  +t ++ +h +       d++i+++ G++  + +  el +
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEImRDLTRAASKkGRTTMMIAHRLSTCM-HADKIIVLDAGRVSEQGTHRELMM 126
                 699*******************************99999846777666541578888888776553.469*********998888777765 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.6e-10   4.7e-08     469     549 ..      37     117 ..      22     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.6e-10
   TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                 +ls G+++r+a+  a l++ pvl+ de ++  d         +l     ++G+t ++i+h       ad++i l +G+v +
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRAASKKGRTTMMIAHRLSTCMHADKIIVLDAGRVSE 117
                 699*************************9999999998888888888899***************************9865 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   7.9e-10   5.6e-08    1050    1144 ..      26     121 ..      17     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 7.9e-10
   TIGR01257 1050 glhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllk..yrsgrtiimsthhmdeadllgdriaiisqgrlycsgtp 1144
                  g+  k  e    lsgg ++++++a a++ da v++ de ts +d  +   i   l +   + grt +m +h +    +  d+i ++  gr+   gt 
  MMETSP1174-20130828|7878_1   26 GVETKVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRDLTRaaSKKGRTTMMIAHRLST-CMHADKIIVLDAGRVSEQGTH 121 
                  67788899999************************************999987666512567********99975.6899**********9999985 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.3e-09   2.3e-07     821     903 ..      30     110 ..      26     121 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 3.3e-09
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrl.vdkGntvvviehnldviksaDyiidl 903
                 k+G+    LsGGe qrv +a+ L k +    + + De t  L +   +++++ l r   +kG t ++i h l    +aD ii l
  MMETSP1174-20130828|7878_1  30 KVGERGLKLSGGEKQRVAIARALLKDA---PVLMCDEATSALDTVTEAEIMRDLTRAaSKKGRTTMMIAHRLSTCMHADKIIVL 110
                 7899999****************9875...68899*******9988888888777651679*******************9976 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.7e-09   2.6e-07     161     216 ..      37      96 ..      25     120 .. 0.61

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.7e-09
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhld....aesvaWlekflkeykGtvvavth 216
                 klsGGek+rva++r ll++  +l+ de t  ld    ae +  l +  ++   t ++++h
  MMETSP1174-20130828|7878_1  37 KLSGGEKQRVAIARALLKDAPVLMCDEATSALDtvteAEIMRDLTRAASKKGRTTMMIAH 96 
                 677777777777777777777777777777777222233333333333333334444444 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   5.8e-09   4.1e-07     136     228 ..      30     123 ..      24     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.8e-09
   TIGR03411 136 kadkkaglLshGqkqwLeigmllvqepkllllDePvaGm.tdeetektaellkela.kersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                 k+ ++  +Ls G+kq++ i+  l++++ +l+ De ++ + t +e e + +l ++ + k r+ +++ h ++   + a+k+ vl  G+v  +G+  e
  MMETSP1174-20130828|7878_1  30 KVGERGLKLSGGEKQRVAIARALLKDAPVLMCDEATSALdTVTEAEIMRDLTRAASkKGRTTMMIAHRLSTCMH-ADKIIVLDAGRVSEQGTHRE 123
                 55666779***************************99985667888888888876515699********98765.78999*******99998665 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.2e-08   2.3e-06     584     653 ..      38     111 ..      31     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.2e-08
   TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye....lakevgitllsvshrksLwkyHeylLkld 653
                 LsgGekqR+a+AR +       + DE+tsA+    E ++ +    +a ++g t + ++hr s   + + ++ ld
  MMETSP1174-20130828|7878_1  38 LSGGEKQRVAIARALLKDAPVLMCDEATSALDTVTEAEIMRdltrAASKKGRTTMMIAHRLSTCMHADKIIVLD 111
                 9***************999999********99877777665111156678889999999999887777766666 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00031     0.022    1092    1163 ..      38     107 ..      35     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00031
   TIGR02168 1092 LSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFa.kllkefskktQ.FIviTHnkgTMeeadqL 1163
                  LSGGEK  +A+a      ++k aP  + DE+ ++LD +     + +l +  skk    ++i H+  T ++ad++
  MMETSP1174-20130828|7878_1   38 LSGGEKQRVAIAR----ALLKDAPVLMCDEATSALDTVTEAEIMrDLTRAASKKGRtTMMIAHRLSTCMHADKI 107 
                  9*********974....457999*************7654444416667777776667999******9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 454.29
//
Query:       MMETSP1174-20130828|7880_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1174-20130828|7876_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-59  197.2   0.0    1.3e-58  196.7   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.8e-50  169.9   0.0    3.4e-50  169.0   0.0    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      7e-42  141.6   0.0    1.1e-41  141.0   0.0    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.1e-30  103.7   0.0    3.4e-30  103.1   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    2.1e-07   28.1   0.0    3.9e-07   27.2   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.4e-06   25.0   0.0    2.1e-06   24.4   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.5e-06   22.7   0.1    0.00026   17.2   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.1e-05   20.9   0.1     0.0022   14.2   0.0    2.2  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
      6e-05   20.0   0.0    9.9e-05   19.3   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    6.8e-05   19.8   0.2     0.0046   13.8   0.1    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00011   19.0   0.1      0.018   11.8   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00022   17.7   0.0    0.00045   16.6   0.0    1.5  1  TIGR00763 lon: ATP-dependent protease La
    0.00029   18.3   0.0    0.00051   17.5   0.0    1.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0022   15.5   0.1     0.0081   13.6   0.0    1.9  2  TIGR01351 adk: adenylate kinases


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.0   4.5e-61   1.3e-58     442     730 ..     118     453 ..     100     455 .. 0.84

  Alignments for each domain:
  == domain 1    score: 196.7 bits;  conditional E-value: 4.5e-61
   TIGR01243 442 evlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleen.sdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslpla.edvdleelakktegytgadieavvreaalaalresv.................................................ksvakekleaeekei.............lkdlkvkkkdflealkkvkpsvskedlrvyeklakelk 730
                  ++ e pnv+w+d+ gl  +k++l+eav  p +++++f     rp kg+ll+gppgtgk+ lakavate++a f a+   +++skw gesek ++ +f+ ar    aiif+deid++  +r + +se+ + ri  ++l +++g+ +  ++++v++atn p  ldpa+ r  r+++ i++p p   ar  + ++   + p +  d ++e + ++t+g +g+di  vvrea +  lr +                                                                              l    v ++ f + l+k + +v++e+l ++e+ ++e++
  MMETSP1174-20130828|7876_1 118 AIVTEKPNVQWDDVAGLIAAKDALKEAVILPRRFPQLFVG-KRRPWKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRSEGESES-SRRIKTEFLVQMQGVSNVmDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPCASARAYMARLNLGDTPNSlVDANFEVIGEQTDGCSGSDISVVVREALMEPLRVCQhakqfreeivdgkdmltpcieypscpwcpinlstnsaaekraaeqrcprC-------------GaarmnlydvdsekLLVPTVSMEMFSRVLDKARATVAQEELTHFEEWTEEFG 453
                 57889*********************************53.24788***************************************************************************9887765.689************98715689**************988..9********************998887654379*******************************44455555555555555555555555555555555555555555555555544.............055555555553336666899************************9999876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   1.2e-52   3.4e-50     110     346 ..     117     349 ..     103     364 .. 0.88

  Alignments for each domain:
  == domain 1    score: 169.0 bits;  conditional E-value: 1.2e-52
   TIGR01242 110 aleveerpevsyediGGlekqlreireavelplkkpelfeevGi.eppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdp.rgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm.klaedvdleelaklteGasGadlkaivteaGmfaire 346
                 +  v e+p+v+++d+ Gl      ++eav lp + p+lf  vG   p kG+llyGppGtGk+ lakava+e++a f  + +s+lv k+ Ge  +lv+ +f+la+    +iifideid+++  r + ++   r ++    ++l +++G  +  + + v++atn +  ldpa+ r  rf++ i +plp  + r  + ++      +   d ++e + + t+G+sG+d+  +v ea m  +r 
  MMETSP1174-20130828|7876_1 117 SAIVTEKPNVQWDDVAGLIAAKDALKEAVILPRRFPQLF--VGKrRPWKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRSEGESESSRRIK---TEFLVQMQGVSNvMDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPCASARAYMARLNLGDTpNSLVDANFEVIGEQTDGCSGSDISVVVREALMEPLRV 349
                 45699**********************************..5651688*************************************************************************99987777777665...4678999998652677999**************98..9*************99988777654431445579************************9998885 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.0   3.8e-44   1.1e-41      46     275 ..     119     345 ..      99     366 .. 0.88

  Alignments for each domain:
  == domain 1    score: 141.0 bits;  conditional E-value: 3.8e-44
   TIGR01241  46 leeekvkvtfkdvaGideakeelveivdfLknpkkftkl..GakiP.kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfet.negvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.eevdlkkvarrtpGfsGadlanlvneaall 275
                 + +ek++v+++dvaG+  ak+ l+e v     p++f +l  G + P kG+ll+GpPGtGk  lakava ea+  ff is sd+v  + G   + v+ lfe a+ +  +iifiDeiD++  +r++g ++  + r +    +Lv+m G ++  +g++vl atn p  LD+a+ r  rf++++ + +P  + r  + ++ + ++  +  + + + + ++t G sG+d++ +v ea + 
  MMETSP1174-20130828|7876_1 119 IVTEKPNVQWDDVAGLIAAKDALKEAVIL---PRRFPQLfvGKRRPwKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRSEGESE-SSRRIK--TEFLVQMQGVSNvMDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPCASARAYMARLNLGDTPNSlVDANFEVIGEQTDGCSGSDISVVVREALME 345
                 34569********************9965...7777775449998889***************************************************************************97554.334444..589******9873689*****************99..**********************999887765789999********************9764 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.1e-32   3.4e-30     168     365 ..     115     295 ..     102     330 .. 0.88

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 1.1e-32
   TIGR03689 168 veelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGves.lenviviGasnredlidPailrPGrldvkirierP 365
                  ++ ++ e P+v ++d+ Gl    + +++av lP  +++l+     +p kG+llyGPPG+Gk  +akava+           a + f+ i   +l++k+ Ge+e+ ++ +fe ar +    +  ++f+de+ds+   r  G s +    +   +l ++ Gv + ++ ++v+Ga+n    +dPai r  r++ +i i  P
  MMETSP1174-20130828|7876_1 115 LNSAIVTEKPNVQWDDVAGLIAAKDALKEAVILPRRFPQLFVGK-RRPWKGILLYGPPGTGKSYLAKAVATE----------ADAKFFAISSSDLVSKWQGESEKLVKTLFELARAE----EHAIIFIDEIDSMCGSRSEGES-ESSRRIKTEFLVQMQGVSNvMDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLP 295
                 5667999**********************************875.69**********************973..........45789*************************99953....4579**************9976.5678899**********87257899***************98..66666666655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.3e-09   3.9e-07      32      93 ..     164     233 ..     157     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.3e-09
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal.ek....pgDlaailtal...eegdvlfiDeihrl 93 
                  +llyGPPG Gk  lak +a+e ++k   +s+  l +k    ++ l+  l +l   ee+ ++fiDei  +
  MMETSP1174-20130828|7876_1 164 GILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLvSKwqgeSEKLVKTLFELaraEEHAIIFIDEIDSM 233
                 59************************9888777662333222456877776653337899*******877 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.1e-09   2.1e-06     313     422 ..     163     271 ..     116     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 7.1e-09
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaL...ggvlFlDEayaLvekrdgakddfGleaidtLLarlE...ndRdrlvviiA 422
                 k +ll GPPGtGk  +A++va         +  +   +s +dl++++ gese+  + l + a      ++F+DE+ ++   r + + +    +    L+++    n  d l v++A
  MMETSP1174-20130828|7876_1 163 KGILLYGPPGTGKSYLAKAVATE-------ADAKFFAISSSDLVSKWQGESEKLVKTLFELARaeeHAIIFIDEIDSMCGSRSEGESESSRRIKTEFLVQMQgvsNVMDGLLVLGA 271
                 56899***************986.......678999****************98888888665222579*********99977777777777777788887533356666666666 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.006       1.8     483     516 ..     158     191 ..     140     199 .. 0.87
   2 !   17.2   0.0   8.8e-07   0.00026     242     304 ..     188     246 ..     186     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.006
   TIGR02639 483 enkPvgsflfvGptGvGktelakqLaeelgvell 516
                 + +P    l +Gp G Gk  lak++a+e   ++ 
  MMETSP1174-20130828|7876_1 158 KRRPWKGILLYGPPGTGKSYLAKAVATEADAKFF 191
                 67999999******************99877765 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 8.8e-07
   TIGR02639 242 akiysLdlgsllaGtkyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsldasn 304
                 ak ++++ ++l+  +k++G+ e+ +k++ e  ++ee+ai+fiDei  + g+ + +++  + s 
  MMETSP1174-20130828|7876_1 188 AKFFAISSSDLV--SKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRSEGES--ESSR 246
                 677777777887..59*************99999999***********987666555..5555 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0054       1.6     591     617 ..     158     184 ..     129     196 .. 0.86
   2 !   14.2   0.0   7.5e-06    0.0022     244     329 ..     200     287 ..     186     298 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0054
   TIGR03346 591 PnrPigsflflGptGvGktelakalae 617
                  +rP    l+ Gp G Gk  laka+a+
  MMETSP1174-20130828|7876_1 158 KRRPWKGILLYGPPGTGKSYLAKAVAT 184
                 579*********************996 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.5e-06
   TIGR03346 244 akyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllkPal...arGelhci.Gattldeyrkyiekdaalerrfq 329
                 +k++Ge e+ +k++  e++++e + i+fide+  + G+ ++eG  +++  +k  +    +G  +++ G   l       e d+a+ rrf 
  MMETSP1174-20130828|7876_1 200 SKWQGESEKLVKTL-FELARAEEHAIIFIDEIDSMCGS-RSEGESESSRRIKTEFlvqMQGVSNVMdGLLVLGATNVPWELDPAIRRRFE 287
                 69****99888875.68999999*************97.678888887777753211122322222233344444444566666666665 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.4e-07   9.9e-05     120     202 ..     165     242 ..     161     271 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.4e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia.rksenas 202
                 ill Gp G+Gk+ la+++a e d  f    ++ l  + + Ge  e +++ l++ a       e+ ii+ideid ++  +se++s
  MMETSP1174-20130828|7876_1 165 ILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLV-SKWQGES-EKLVKTLFELARA----EEHAIIFIDEIDSMCgSRSEGES 242
                 99*********************987544445554.4578885.8888888887765....4789********98524566655 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.02         6      48      81 ..     163     196 ..     157     204 .. 0.91
   2 !   13.8   0.1   1.6e-05    0.0046     242     272 ..     216     246 ..     203     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.02
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveat 81 
                 k il+ G+ G Gk+ +a+ +a  a+a f  + ++
  MMETSP1174-20130828|7876_1 163 KGILLYGPPGTGKSYLAKAVATEADAKFFAISSS 196
                 88************************99988765 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.6e-05
   TIGR00390 242 vdrveesGiifideidkiakkgessgadvsr 272
                 + r+ee+ iifideid ++ +  + +++ sr
  MMETSP1174-20130828|7876_1 216 LARAEEHAIIFIDEIDSMCGSRSEGESESSR 246
                 679****************988666666665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     6e-05     0.018      42      66 ..     164     188 ..     153     199 .. 0.86
   2 !    5.0   0.0    0.0068         2     116     145 ..     209     238 ..     192     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6e-05
   TIGR02928  42 nvliyGktGtGKtavtkkvlkelee 66 
                  +l+yG++GtGK+  +k+v  e+ +
  MMETSP1174-20130828|7876_1 164 GILLYGPPGTGKSYLAKAVATEADA 188
                 69*****************988765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0068
   TIGR02928 116 vfeelvkeleeredsliivLDEiDklv.kke 145
                 + ++l+ el + e+ +ii +DEiD+++ +++
  MMETSP1174-20130828|7876_1 209 LVKTLF-ELARAEEHAIIFIDEIDSMCgSRS 238
                 444555.4566777888999******96444 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06   0.00045     356     386 ..     165     195 ..     156     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.6e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlsl 386
                 + l+GPPG GK+ lak++A+  + kf+ +s 
  MMETSP1174-20130828|7876_1 165 ILLYGPPGTGKSYLAKAVATEADAKFFAISS 195
                 789************************9985 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06   0.00051      41     107 ..     165     238 ..     150     251 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.7e-06
   TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll....vev...legleqaelvalDdvealagere 107
                 + l+G++g+Gks+L +A++++a ++  ++   +l ++ q +    v+    l+ +e+ +++ +D+++++ g+r+
  MMETSP1174-20130828|7876_1 165 ILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGEseklVKTlfeLARAEEHAIIFIDEIDSMCGSRS 238
                 789****************9998764443333333222222112232234478899999*********999874 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   3.4e+02     162     183 ..      51      72 ..      13      77 .. 0.71
   2 !   13.6   0.0   2.8e-05    0.0081       2      36 ..     165     201 ..     164     217 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.2
   TIGR01351 162 DteevvkkRlevYkeqteplie 183
                   +e++ kR+e Y +++e l +
  MMETSP1174-20130828|7876_1  51 AVKETILKRVEGYMKRAEDLKN 72 
                 4578888899888888877655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.8e-05
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGdllRa 36 
                 ++l GpPG+GK+  ak +a++ +  ++ is+ dl+ +
  MMETSP1174-20130828|7876_1 165 ILLYGPPGTGKSYLAKAVATEADakFFAISSSDLVSK 201
                 6899**************9986533899***999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.21s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 1037.71
//
Query:       MMETSP1174-20130828|7884_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 213.91
//
Query:       MMETSP1174-20130828|7881_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 416.59
//
Query:       MMETSP1174-20130828|7889_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|7886_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-09   34.6   0.0    3.4e-05   21.2   0.0    2.1  2  TIGR00083 ribF: riboflavin biosynthesis protein RibF


Domain annotation for each model (and alignments):
>> TIGR00083  ribF: riboflavin biosynthesis protein RibF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1     9e-06     0.037     168     193 ..      38      64 ..      33      68 .. 0.88
   2 !   21.2   0.0   8.3e-09   3.4e-05     234     284 ..     137     188 ..      96     193 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9e-06
   TIGR00083 168 PYaikGtVihgqklg.rtlgfPTaNik 193
                 P+++kG V++g  +g + lg PTaN+ 
  MMETSP1174-20130828|7886_1  38 PWRVKGPVVRGVGRGsKELGIPTANLP 64 
                 9*************94569******85 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 8.3e-09
   TIGR00083 234 eelviEvhll.dfsqelygqeikvellkkiRneqkFssldeLkkqIekDlkq 284
                 + +++E  ll df  + yg+e+++  + +iR+e  F+ +d+L + I++D++ 
  MMETSP1174-20130828|7886_1 137 DGKTLEPWLLhDFGRDFYGEELRLVVCGYIRPEAPFTTIDALIARIHEDARV 188
                 456677766659*************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1191.47
//
Query:       MMETSP1174-20130828|7890_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-30  102.6   0.4    8.8e-28   95.0   0.0    2.2  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    2.7e-09   35.2   0.3    4.4e-08   31.3   0.0    2.3  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    3.8e-08   31.0   0.4    0.00035   18.0   0.1    2.3  2  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0014         2       3      20 ..     108     125 ..     106     131 .. 0.84
   2 !   95.0   0.0   6.4e-31   8.8e-28      43     159 ..     131     248 ..     125     255 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0014
   TIGR02251   3 tlvLDLDeTLvhsslkka 20 
                 tlvLDL+ TLv s+  + 
  MMETSP1174-20130828|7890_1 108 TLVLDLEGTLVKSTWDRR 125
                 8************87765 PP

  == domain 2    score: 95.0 bits;  conditional E-value: 6.4e-31
   TIGR02251  43 lkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfis..denDeeLlklipflealr 159
                  kRP+vd+Fl+ ++++ye+v+f   + +  ++++  ld+++ v  ++l Re +  +ng y+Kdls ++++l+k+viiD+  +++slqpeN+i+i++f +  d+nD++L ++ +fl al 
  MMETSP1174-20130828|7890_1 131 AKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPIMMSLDPEN-VCWHKLTREATRYENGVYIKDLSHLNRSLKKMVIIDDDEQAFSLQPENGIHINAFKNarDKNDTSLHDIGKFLAALV 248
                 69************************************877.99*****************************************************98779*************9865 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.06        82       8      24 ..     108     124 ..     107     130 .. 0.86
   2 !   31.3   0.0   3.2e-11   4.4e-08      60     153 ..     132     226 ..     127     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.06
   TIGR02250   8 vLvlDlDqtlihttkes 24 
                 +LvlDl+ tl+++t ++
  MMETSP1174-20130828|7890_1 108 TLVLDLEGTLVKSTWDR 124
                 59**********99765 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 3.2e-11
   TIGR02250  60 lRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgd..rilsrdestsaktKsLkkllpadesavviiDdredvWkksk.nLikvery 153
                  RP+v++fl+ +++ ye+ ++   t + ++ i+  lDPe++ +++  r  +r e +    K L++l   + + +viiDd e+ ++ ++ n i+++ +
  MMETSP1174-20130828|7890_1 132 KRPGVDKFLQDMAQYYEIVLFSNNTASIVEPIMMSLDPENVCWHKltREATRYE-NGVYIKDLSHLNR-SLKKMVIIDDDEQAFSLQPeNGIHINAF 226
                 6****************************************9986336677777.5788999999987.6666778999999999888899999887 PP

>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   4.3e-05     0.058      24      81 ..     109     167 ..     104     181 .. 0.83
   2 !   18.0   0.1   2.6e-07   0.00035     128     184 ..     199     255 ..     185     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.3e-05
   TIGR02245  24 lvldidytlldhrsaaedv.velmrpylhefltaayeeydiviwsatsmkwielklkel 81 
                 lvld++ tl+      +++  + +rp +++fl    + y+iv++s+ +   +e  +  l
  MMETSP1174-20130828|7890_1 109 LVLDLEGTLVKSTWDRRHGwRHAKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPIMMSL 167
                 89******9987655554426789**********************9999999887766 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 2.6e-07
   TIGR02245 128 skkntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiae..ledl 184
                 s k  + +dd ++ f + p+nG++i+ fk+a    ++d+ l  + k+l  + +  +ed+
  MMETSP1174-20130828|7890_1 199 SLKKMVIIDDDEQAFSLQPENGIHINAFKNARD--KNDTSLHDIGKFLAALVHegVEDF 255
                 5577899*********************98755..568899999999998877455666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1255.51
//
Query:       MMETSP1174-20130828|7893_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    4.2  20.2        4.7    4.2  14.0    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  14.0    0.0011       4.7     198     252 ..       2      48 ..       1      58 [] 0.30

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0011
   TIGR02794 198 eaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerkaakqeaeladl 252
                 ++Ka+ae    Ka+ae  a A + A+ Ka a + a+ +a+a  k    ++e++++
  MMETSP1174-20130828|7893_1   2 AEKAAAE----KAAAE-TAEASKTAADKASAGKTAAGEAAAVTKT---SEEADEI 48 
                 3444333....22222.1123333333333333333333333332...3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|7895_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 339.97
//
Query:       MMETSP1174-20130828|7894_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-08   30.3   0.9    6.4e-08   30.1   0.6    1.1  1  TIGR01388 rnd: ribonuclease D
    0.00013   18.3   0.0    0.00016   18.1   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.6   3.1e-11   6.4e-08     195     290 ..     101     201 ..      58     230 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 3.1e-11
   TIGR01388 195 ayreiksarklkpkelavlkalaaWRereAreRdkprnfvlkeeallelarlaprnleeleel.glkgkeirks....gdkllalvkeAlalPedelpkal 290
                 +y +  + +   +++ av++al +WRe+ Ar+ d++  fv     l   a ++p+nle+l+++ ++ +   + +    +d +l++v++Al++P+  +++++
  MMETSP1174-20130828|7894_1 101 SYGRAYKKKSWTSRNTAVFRALHKWREQVARDADESPHFVCPSSLLVDAAVQPPHNLEALQQIcTPLPPVLEDTalgyADRFLEAVAHALNQPAVPESTKK 201
                 343444456677899************************************************765444333331222799***********975433332 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.6e-08   0.00016     481     569 ..      76     163 ..      40     186 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.6e-08
   TIGR01389 481 lqleeavkkvlkeevevllrekkvvkkekkakkkalsvevdeaLfeaLrelRkelaeeenvppyviFsDstLkelaekkPatlnellki 569
                 +q++ a  k+ k  +  +++  k++++  +a kk+  ++++ a+f aL+++R ++a+ ++ +p+ +   s L + a + P++l++l++i
  MMETSP1174-20130828|7894_1  76 VQSQRACMKLWKPRTPSATA-WKKDRSYGRAYKKKSWTSRNTAVFRALHKWREQVARDADESPHFVCPSSLLVDAAVQPPHNLEALQQI 163
                 34444444444433333333.333444447888888899999********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 920.45
//
Query:       MMETSP1174-20130828|7896_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-83  278.8   0.0    1.4e-83  278.5   0.0    1.0  1  TIGR01229 rocF_arginase: arginase
    1.2e-19   68.8   0.1    3.8e-12   44.2   0.0    2.2  2  TIGR01230 agmatinase: agmatinase
    3.1e-16   57.3   1.1    1.8e-15   54.8   0.6    2.2  2  TIGR01227 hutG: formimidoylglutamase


Domain annotation for each model (and alignments):
>> TIGR01229  rocF_arginase: arginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.5   0.0     1e-86   1.4e-83       2     298 ..      23     334 ..      22     336 .] 0.91

  Alignments for each domain:
  == domain 1    score: 278.5 bits;  conditional E-value: 1e-86
   TIGR01229   2 ivglpfseGqgkrGvdkGpkalreaglleklkdlekevedlgqva.aaklekesd.........reavkaers..vlaakeklaekvkkvveekrfplvLggdHsiaiGtvsgvakk.akdk.klgvlwlDAHaDintletstSgnlHGmPlafllgrlkkevedleelkllkgk.eispkklvyiGlRdvdegErkil...kelgikvfsmkeidklGiakvvektleslkaedpihlSlDvDglDpklapatGtpvrgGltfrEgklilelllesglltaldlvEvNPtldik.eksetikaavelvesllget 298
                 ++g+p++ Gq+  G++ Gp++lr+ gl +++ +l+   ed g+v+   ++ k+             + ++     v++a+e la++vk  ++ ++f+l LggdHsi +Gtv+g++++ ++ k  +gv+w+DAHaDint+ +s+Sgn+HGmP+++l+    +++ d++++++l     ++p +++yiGlRd+d +Erk l   +++g+ v +m+++d  Gi+ vv+++l+sl  +  +hlS+D+D+lDp++apatGt vrgGltfrEg +i+e ++ + +l+++dlvEvN  l  + e++ t++ +  l++s+lg+ 
  MMETSP1174-20130828|7896_1  23 VIGAPMQYGQPLVGTEDGPSMLRATGLRDAVTELGWRFEDQGDVPmNPDFLKQLFtpgaasmpsPGNSQN--CllVGKANELLAKQVKDAAQSGHFVLSLGGDHSIGLGTVAGMLSAqYRFKgGIGVVWVDAHADINTPLNSKSGNMHGMPVGMLMR--LDGTADTPGFSWLDDVpVLKPSQVAYIGLRDLDLAERKTLleqRKKGMFVSTMQDVDAVGIGMVVQRALDSLGDDVALHLSYDIDALDPNVAPATGTVVRGGLTFREGTYIAEAVAATKRLVSMDLVEVNEALRHEsEQTVTAEMGKTLIASALGKR 334
                 8********************************************6666666654678766643333334..245**************************************99861555578********************************9..455679*******98889********************996777899**************************************************************************************976788889999999******986 PP

>> TIGR01230  agmatinase: agmatinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.2e-08   1.6e-05      80     133 ..     101     158 ..      83     176 .. 0.76
   2 !   44.2   0.0   2.8e-15   3.8e-12     173     266 ..     221     320 ..     195     332 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.2e-08
   TIGR01230  80 ekieevveelleegkfvvaiGGeHsitlpvirAvkk....kfeklavvqfDAHtDlrd 133
                 e + ++v++  + g+fv+++GG+Hsi l+ +  + +      + + vv +DAH+D+ +
  MMETSP1174-20130828|7896_1 101 ELLAKQVKDAAQSGHFVLSLGGDHSIGLGTVAGMLSaqyrFKGGIGVVWVDAHADINT 158
                 5566788888999*************99876655443110556799*********975 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 2.8e-15
   TIGR01230 173 rennikvlk.relede.....iaevlakvl.dkpvyvtiDiDvlDPafaPGvgtpepgGltskellklfvlaekekkvvGlDvvEvaPvydssevtaltaa 266
                 r++++ v++  +++ +      +++l ++  d  ++++ DiD+lDP  aP +gt++ gGlt +e+  + +    +k++v +D+vEv  + ++     + +a
  MMETSP1174-20130828|7896_1 221 RKKGMFVSTmQDVDAVgigmvVQRALDSLGdDVALHLSYDIDALDPNVAPATGTVVRGGLTFREGTYIAEAVAATKRLVSMDLVEVNEALRHESEQ-TVTA 320
                 4555655554445444543333444444441346799**************************************************998874332.2222 PP

>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.27   3.7e+02      35      66 ..      19      46 ..       6      75 .. 0.57
   2 !   54.8   0.6   1.3e-18   1.8e-15      95     291 ..      98     313 ..      94     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.27
   TIGR01227 35 kgvaliGvaldkgvirnkGrtGAkeaPsairq 66
                + va+iG +++ g       +G +++Ps++r 
  MMETSP1174-20130828|7896_1 19 NTVAVIGAPMQYGQPL----VGTEDGPSMLRA 46
                4555555555555332....346777777764 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 1.3e-18
   TIGR01227  95 daqkevaqavaelladarvvvllGGdneiayatikalaqa.akgekriGvinfDAHfDlRavede................rptsGTp.frqlldeeqaedfhlivlGirrfsnt..qalfdyakkkgvryvtddalaelslet.ikdileefldevDfiyltvdlDVldaasAPGvsApaagGleleellelvkriaasdkvrgveivEvnPtlDad 291
                 +a++ +a++v+++ ++++ v+ lGGd++i   t++++  a ++ +  iGv+ +DAH D+ +  +                   t  Tp f  l d    +  + + +G r ++ +  ++l ++ +kkg+ + t++ + +  +    + +l+ + d+v  + l+ d+D ld   AP    +  gGl  +e   +++++aa +++ ++++vEvn  l  +
  MMETSP1174-20130828|7896_1  98 KANELLAKQVKDAAQSGHFVLSLGGDHSIGLGTVAGMLSAqYRFKGGIGVVWVDAHADINTPLNSksgnmhgmpvgmlmrlDGTADTPgFSWLDDVPVLKPSQVAYIGLRDLDLAerKTLLEQ-RKKGMFVSTMQDVDAVGIGMvVQRALDSLGDDV-ALHLSYDIDALDPNVAPATGTVVRGGLTFREGTYIAEAVAATKRLVSMDLVEVNEALRHE 313
                 67888999****************************99887888889************9865444667777888777777556666557777777777778899999998775511566665.556777778888888444430444455544444.699***************************************************988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1167.06
//
Query:       MMETSP1174-20130828|7902_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|7901_1  [L=733]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.52
# Mc/sec: 1860.54
//
Query:       MMETSP1174-20130828|7903_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-10   35.1   2.0    0.00017   17.6   0.5    2.9  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-07    0.0012     458     548 ..     257     366 ..     242     375 .. 0.75
   2 !   17.6   0.5   4.2e-08   0.00017     564     671 ..     408     508 ..     383     527 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3e-07
   TIGR02956 458 eeAnrAKSaFLAtmSHEiRTPlnGvlG....TleLLadt.kLtseq..............qkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlh 548
                  +  +  S+F     H +R P nG++G     ++LL d  +L+ +q              ++++++ +   + + +iLn +LD  k E G++ +    +dl++L  d+++
  MMETSP1174-20130828|7903_1 257 SRLLQQESQFVSHVFHQVRNPYNGIVGhincATSLLDDAaNLNDAQilewlaeqepleaiRNDINMAKGCAKHMNQILNNLLDLKKTEEGKMVLVLDRTDLNALCFDAVA 366
                 5555678********************4443346887752566554444443322333335566667778899*******************************999876 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4.2e-08
   TIGR02956 564 eidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvs.lndds.....llfeVeDtGvGiaeeeqetlFkaftqae.grkksgGTGLGLAiskrlveamdgelsveSelg 671
                 +    +p ++ +D  rirQ+l+Nl+  +i+   +G ++l+++ l  ++     ++fe+ D               +   ++ g++++    LGL ++++lv + +ge+ v+    
  MMETSP1174-20130828|7903_1 408 QQRTRVPLIVLADSVRIRQILNNLLHDTIQRMVNGVIQLQLTqLRSEKddevvVRFEIRDK--------------SDASVNgGQRNVHPSELGLVVAQHLVRLHGGEIRVDDDDP 508
                 3445789999***************************999751444334455666666552..............2234555888999999999999999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.49
# Mc/sec: 2211.49
//
Query:       MMETSP1174-20130828|7907_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    8.0   5.6        2.9    5.8   0.9    2.9  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.9   0.00071       2.9      34      56 ..       6      28 ..       2      34 .. 0.80
   2 ?    3.0   0.2    0.0051        21      34      52 ..      26      44 ..      22      49 .. 0.81
   3 ?    0.8   0.0     0.025     1e+02      38      49 ..      58      69 ..      50      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00071
   TIGR01149 34 EvaqriGkkvGRDiGiLYGlviG 56
                E+   +G+ vGRD+G   G+ +G
  MMETSP1174-20130828|7907_1  6 ELGTGVGNVVGRDVGTAVGVELG 28
                66667899*******98887666 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0051
   TIGR01149 34 EvaqriGkkvGRDiGiLYG 52
                E+   +G+ vGRD G + G
  MMETSP1174-20130828|7907_1 26 ELGTGVGNVVGRDEGTMVG 44
                566678999****998876 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.025
   TIGR01149 38 riGkkvGRDiGi 49
                 +Gk vG ++G 
  MMETSP1174-20130828|7907_1 58 DVGKMVGNEVGT 69
                579999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|7909_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|7912_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1174-20130828|7913_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-16   55.3   0.0    1.2e-15   54.9   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.2e-13   47.6   0.0      3e-13   47.2   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.4e-12   44.0   0.1      2e-12   43.5   0.1    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    9.9e-09   31.9   0.1    1.4e-08   31.4   0.0    1.1  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    2.2e-06   24.0   0.0      3e-06   23.6   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B
    3.4e-05   20.9   0.0    0.00018   18.6   0.0    1.8  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    9.9e-05   19.0   0.0    0.00013   18.6   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00039   16.6   2.6    0.00051   16.2   1.8    1.1  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
     0.0075   12.4   0.0      0.011   11.9   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
       0.01   11.7   0.7      0.026   10.3   0.5    1.5  1  TIGR02621 cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.8e-18   1.2e-15     191     333 ..     119     259 ..      94     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.8e-18
   TIGR01389 191 efvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl 333
                  f   +dR ++  sv  ++ +++ + + l+ e  ++ +++++++++   +a+aL+ +g +ala h+ l++++R++ + +F     +v+vat+    G+d   v  v+ +  P++  ++   aGR  R G + +a++l + + +
  MMETSP1174-20130828|7913_1 119 LFPANVDRLEVLCSVLADHGSDRTVGRTLQPE--DTCLVFCETKAECAGVAKALQRQGASALALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQVSPPQDAATHTHRAGRTARAGAPGDALVLVQGRTI 259
                 56678899999999999999999999998765..678**************************************************************************************************99877655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   7.2e-16     3e-13     224     345 ..     148     270 ..     132     302 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 7.2e-16
   TIGR00614 224 fkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvall.rrllvee 345
                 ++ ++ +++C +++++  va+ Lq++g +a+a h +le+++r++v   f    ++v+vat     G++   v  v+  s p++  ++   +GR  R g + +++++ +   + +  rr+l+ +
  MMETSP1174-20130828|7913_1 148 QPEDTCLVFCETKAECAGVAKALQRQGASALALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQVSPPQDAATHTHRAGRTARAGAPGDALVLVQGRTIGRGgRRVLTDQ 270
                 567899******************************************************999****************************************99988777765325555555 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1   4.8e-15     2e-12     241     347 ..     143     244 ..     112     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 4.8e-15
   TIGR04121 241 vleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrl 347
                 v ++++ + t+lvF+ t++ +  + +aL ++ +     +al Hg l++++R+kv + ++ g+ r++v+T     G+D + v lv+qv  p+ +a    R+GR++   
  MMETSP1174-20130828|7913_1 143 VGRTLQPEDTCLVFCETKAECAGVAKALQRQGAS---ALAL-HGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQVSPPQDAATHTHRAGRTAR-A 244
                 66789999********************988777...8898.7***********************************************************874.3 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.3e-11   1.4e-08     200     290 ..     141     226 ..     113     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.3e-11
   TIGR01970 200 raveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsg 290
                 r+v ++l+   +  Lvf   +ae + v++aL+   +as    + L+G+le +++d++++    G  +v +atn+a   l i+Gv +v+  +
  MMETSP1174-20130828|7913_1 141 RTVGRTLQP-EDTCLVFCETKAECAGVAKALQR-QGAS---ALALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQVS 226
                 566666654.4789*****************94.4435...4579******************************************9865 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.3e-09     3e-06     441     516 ..     148     223 ..     140     243 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 7.3e-09
   TIGR00631 441 aknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslva 516
                 + ++  lv   tk  +  +++ l+++g  +  lh +++  er ++++ +r g++ vlv  n+   GlD+  v+lv 
  MMETSP1174-20130828|7913_1 148 QPEDTCLVFCETKAECAGVAKALQRQGASALALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVV 223
                 567788999999999999********************************************************96 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.4e-07   0.00018     127     319 ..      26     244 ..      18     260 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.4e-07
   TIGR01587 127 vliiDEvhayeeytkal.llallevlk.dvdvkillmsAtlpkllkeylekielveenealdlke..............................ekrfenqrisliekdkleeissl......erllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisvdvlitelapid...sLiQRlGRlaRy 319
                  l++DE++ + +   +  + a+++ l  + + + ll sAt +++++ +   +    e  a d  e                              +           +++ ++  s+l        + + l+ e   l+++ t  +   + ++l+ +++    + lH+   + +r k     l+ ++    +v+vaT v+  +lDi    l+ +++p+      + R+GR aR 
  MMETSP1174-20130828|7913_1  26 TLVLDEADSLLDMGFEEeVNAVVKQLPaRGERQTLLFSATWSDRVESLGYRVTSNPEVIADDAGEqhghsaaansptedqqqvgpaqlrqravlfP---------ANVDRLEVLCSVLadhgsdRTVGRTLQPEDTCLVFCETKAECAGVAKALQRQGAS--ALALHGDLEQAERDKV----LSCFRGGSCRVLVATNVASRGLDIKGVALVVQVSPPQdaaTHTHRAGRTARA 244
                 589999998777655554999999998788999999999999888888777776666666665557888999999999999999985544444433.........4444443333333111110223466777888999999999999999999988887..899****999998766....9*********************************9752224578****9994 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07   0.00013     483     532 ..     175     224 ..     154     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-07
   TIGR00643 483 lnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvi 532
                 ++   lhg l+++e+++vl+ Fr +++ +LvaT+v   G+d+  ++++v 
  MMETSP1174-20130828|7913_1 175 ASALALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQ 224
                 444569***********************************988777765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.8   1.2e-06   0.00051     162     380 ..      28     253 ..      13     258 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.2e-06
   TIGR03817 162 vvdechsyrGv.fGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePallelegengapvrrs.....asaeaadlladlvaeg..vrtltfvrsrrgaevvaleakerlaevdaelaervaayra..Gyla.edrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgq..dalvv 380
                 v+de+ s   + f  +v +v+++l       G     ll sat +d  ++    +  + e++++d+  +   + +   P+  ++++   a++r+      a  +  ++l+ ++a+    rt+        + +v  e+k++ a v++ l  + a+  a  G l   +r ++ + ++ G+ + ++atn    G+di G+  vv    P   a+   +aGr+ r+g   dalv+
  MMETSP1174-20130828|7913_1  28 VLDEADSLLDMgFEEEVNAVVKQLPA----RGERQ-TLLFSATWSDRVESLGYRVTSNPEVIADDAGEQHGHSAAANSPT-EDQQQVGPAQLRQRavlfpANVDRLEVLCSVLADHgsDRTVGRTLQPEDTCLVFCETKAECAGVAKALQRQGASALAlhGDLEqAERDKVLSCFRGGSCRVLVATNVASRGLDIKGVALVVQVSPPQDAATHTHRAGRTARAGApgDALVL 253
                 55555555443355666666655543....23333.45678888888888887777888888888888888888887777.444444455555441111144566677887777651246777666777778889999999999999999999886654466751588899999************************************************9963355554 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.7e-05     0.011     688     729 ..     178     219 ..     173     226 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.7e-05
   TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipna 729
                    Hg +e+ e ++v++ F  ++  vLv+T +   G+di  +
  MMETSP1174-20130828|7913_1 178 LALHGDLEQAERDKVLSCFRGGSCRVLVATNVASRGLDIKGV 219
                 568************************************765 PP

>> TIGR02621  cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   6.3e-05     0.026     283     408 ..     151     262 ..     132     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.3e-05
   TIGR02621 283 eailVfvrtvdevkkvvakLkkearrledltgtvrglerdtlarkgeilarflppsrtgsearpqqgtvyvVaTsalEVGvdldfdhLvtdlap...ieslvqRfGRvnRlGerldaeiavVhstlgkd 408
                 ++ lVf++t  e   v++ L+++      l g ++ +erd          + l+ +r gs         ++VaT+    G d+   +Lv + +p   + + + R GR  R G+ +da + v  +t+g++
  MMETSP1174-20130828|7913_1 151 DTCLVFCETKAECAGVAKALQRQGASALALHGDLEQAERD----------KVLSCFRGGS-------CRVLVATNVASRGLDIKGVALVVQVSPpqdAATHTHRAGRTARAGAPGDALVLVQGRTIGRG 262
                 5779999999999999999999999999999999999999..........4566443333.......458*********************997322445678**************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1140.39
//
Query:       MMETSP1174-20130828|7916_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|7921_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 216.84
//
Query:       MMETSP1174-20130828|7922_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|7924_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|7925_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 513.81
//
Query:       MMETSP1174-20130828|7926_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|7929_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2825.28
//
Query:       MMETSP1174-20130828|7931_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 751.32
//
Query:       MMETSP1174-20130828|7937_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1174-20130828|7936_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   42.5   0.0    2.8e-11   41.6   0.0    1.4  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    2.1e-05   21.8   0.1    3.4e-05   21.1   0.1    1.3  1  TIGR03448 mycothiol_MshD: mycothiol synthase
      8e-05   19.2   0.0    0.00011   18.7   0.0    1.2  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
     0.0013   15.7   0.0     0.0025   14.8   0.0    1.4  1  TIGR01686 FkbH: FkbH domain
     0.0049   14.3   0.3      0.015   12.7   0.0    1.8  2  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase
  ------ inclusion threshold ------
      0.013   13.4   0.0      0.028   12.3   0.0    1.5  1  TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase
       0.03   12.3   0.0      0.047   11.6   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   4.7e-14   2.8e-11      58     119 ..     218     279 ..     202     284 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 4.7e-14
   TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkeialrk 119
                 ++++av+   +++G+GraLl+  ++eak++  ++++L V + N+aA  +Y+k gf+  +  k
  MMETSP1174-20130828|7936_1 218 LTEVAVDCRARRRGVGRALLEGAMEEAKKKYYNTLYLHVDVANDAALCFYHKAGFRALKETK 279
                 789****************************************************9987765 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   5.9e-08   3.4e-05     234     289 ..     221     276 ..     209     280 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.9e-08
   TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtvae 289
                 v+vd  a++rG+G+aL    ++  +++  ++  L v+  n+aA+  Y+k gF   +
  MMETSP1174-20130828|7936_1 221 VAVDCRARRRGVGRALLEGAMEEAKKKYYNTLYLHVDVANDAALCFYHKAGFRALK 276
                 7999************************************************8765 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.9e-07   0.00011     148     218 ..     208     278 ..     193     303 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.9e-07
   TIGR03103 148 afddpekGsslWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrripvf 218
                 ++dd+ +   l  +avd +a++ GvG al   ++e+ +++  + l l v   n++a  +y+k gfr+++  
  MMETSP1174-20130828|7936_1 208 LLDDSGRRLYLTEVAVDCRARRRGVGRALLEGAMEEAKKKYYNTLYLHVDVANDAALCFYHKAGFRALKET 278
                 66777777788889****************************************************99765 PP

>> TIGR01686  FkbH: FkbH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.3e-06    0.0025     254     320 ..     209     273 ..     198     276 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.3e-06
   TIGR01686 254 lekkegtlvikalviSCRvlgrkveerllrllveqakelgahkvrltyrrterNvlveslleelgfe 320
                 l+ + ++l + + ++ CR+  r+v+  ll+ ++e ak++  ++  l+ +  + N  +  +++++gf+
  MMETSP1174-20130828|7936_1 209 LDDSGRRLYLTEVAVDCRARRRGVGRALLEGAMEEAKKKYYNT--LYLHVDVANDAALCFYHKAGFR 273
                 567788999******************************9995..5666678899999999999997 PP

>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.53   3.1e+02      27      62 ..      50      84 ..      45     117 .. 0.62
   2 !   12.7   0.0   2.5e-05     0.015     119     179 ..     209     271 ..     193     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.53
   TIGR02382 27 evdlslvvnetevvtsepslrvateadipalrdvas 62
                e++l +++++t++ t++ ++  a+ +d   l  v+s
  MMETSP1174-20130828|7936_1 50 ELELHVPIDQTTS-TPSEGASLAEGDDKLDLIGVSS 84
                6666667766443.4444555555555444444443 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.5e-05
   TIGR02382 119 lddsdariGl..lavfpgvqirGiGarlmaaakawarrrGltrlrvatqvgnvaalrlyirsG 179
                 ldds  r+ l  +av   ++ rG+G  l++ a + a+++   +l +   v+n aal  y ++G
  MMETSP1174-20130828|7936_1 209 LDDSGRRLYLteVAVDCRARRRGVGRALLEGAMEEAKKKYYNTLYLHVDVANDAALCFYHKAG 271
                 677777877722456667889**************************************9988 PP

>> TIGR02406  ectoine_EctA: diaminobutyrate acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.028      46     131 ..     195     280 ..     191     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-05
   TIGR02406  46 eeggeikgfvsgylkperpdvlfvWqvaveekarGkglakrlleallerealeevksvEatitpdneAskalFkklaqrrevelee 131
                 ++gg + +  +g l  +   +l++  vav+ +ar +g++++lle  +e  + +  +++   +   n A+  +++k + r   e++ 
  MMETSP1174-20130828|7936_1 195 CKGGALGTTATGTLLDDSGRRLYLTEVAVDCRARRRGVGRALLEGAMEEAKKKYYNTLYLHVDVANDAALCFYHKAGFRALKETKA 280
                 566777777788888899999**************************998888888888888899999998888876665555544 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     8e-05     0.047      89     137 ..     228     276 ..     216     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8e-05
   TIGR03585  89 k.kgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfeleg 137
                 +  g+G+ l+e ++e a +k   ++L l+V   N +al +y+k gf   +
  MMETSP1174-20130828|7936_1 228 RrRGVGRALLEGAMEEAKKKY-YNTLYLHVDVANDAALCFYHKAGFRALK 276
                 3379***********999986.799*********************8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1301.04
//
Query:       MMETSP1174-20130828|7944_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|7945_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 864.95
//
Query:       MMETSP1174-20130828|7943_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   20.5   5.4    0.00027   17.9   3.7    2.0  1  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
      0.087    9.7   9.4       0.13    9.2   6.5    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
       0.81    7.5  10.0        1.3    6.8   6.9    1.4  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.7     2e-07   0.00027     296     459 ..     159     327 ..     152     333 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2e-07
   TIGR00435 296 hyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEaldddlntaealavlselvkksn....lkeiskakaallieelialesvlekll...glpsksvqagsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                 + ++q  +++++ ++a ++  + +   ++++++ a+++++++ ++p + e+ a  v   ++ l  + + +v++e  kk +     ++ ++a+a + + +l+ ++ +           +k++ +++   +++ +++li++r+e r++++++ +D+i+ +l  +g+ ++D+++
  MMETSP1174-20130828|7943_1 159 QAYQQQAYQQQAYQQAYQQAYQQQPYQQQAYQQQAYQQHMQQ-QQPAKAEYGAVAV-DPSNTLPEPASDEVITEYCKKRErirlSRDYTTADAMKEALRLRGIHVYDRDHSwmrTGGNKTFFTQACTITDEAIKALITKRNESRRSRDFTTSDQIKSDLRVQGVEVDDREE 327
                 445566788888888887766666677777777777877774.4677889998888.67899999***********9998765433334444444444444555444333322333444455555557899************************************9965 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.5   9.6e-05      0.13     402     458 ..     148     204 ..     119     277 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.6e-05
   TIGR01628 402 qaa.qqqavvtqavkqqlasqplnfkinqmmlstqnpskpea..pnalaqlaqqrlqaqg 458
                 qa+ qqq++++qa +qq+ +q+  ++   ++ ++q+p +++a   +a++q  qq+  ++ 
  MMETSP1174-20130828|7943_1 148 QAPyQQQPYQQQAYQQQAYQQQ-AYQQAYQQAYQQQPYQQQAyqQQAYQQHMQQQ--QPA 204
                 4441344444444444444444.66656666666666655532222333333222..222 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.9   0.00098       1.3      75     138 ..     151     216 ..     140     266 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00098
   TIGR02205  75 seqkepsise..avdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepreakslavasaee 138
                  +q+ ++  +  +++++++  ++  +   ++qp qqq++++qa ++  q+ +p +a+  ava    
  MMETSP1174-20130828|7943_1 151 YQQQPYQQQAyqQQAYQQQAYQQAYQQAYQQQPYQQQAYQQQAYQQHMQQQQPAKAEYGAVAVDPS 216
                 344433333200333444555555555555688888888888888888888888887644443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1128.51
//
Query:       MMETSP1174-20130828|7948_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1949.14
//
Query:       MMETSP1174-20130828|7950_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-21   73.9   0.1    8.1e-21   73.2   0.1    1.3  1  TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
    6.2e-07   27.5   0.1    1.3e-06   26.4   0.1    1.6  1  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00560  pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1     4e-24   8.1e-21       2     111 ..     191     294 ..     190     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 4e-24
   TIGR00560   2 kipnklTlvRiialpllillllenvlslqvslliggllfliaavtDylDGylARkyklvsnfGkllDPlaDkvlvlavliilvykglvpallliviiaRelvisglRvla 111
                  +pn +T++R+++ p +  ++l    + q+   i+g+   +a ++D+lDG++A++y ++s +G +lDPlaDk+lv  v + lv++g +pa++++++i R+ ++ gl  ++
  MMETSP1174-20130828|7950_1 191 TVPNAITITRMVSSPAISWFIL----TDQWEAAIAGV--ALAGFSDFLDGFIAKHYDQKSILGTFLDPLADKILVGCVALPLVAQGALPAWIVATMIGRDAALIGLICWV 294
                 58*************9998888....66777777775..579**********************************************************9999987765 PP

>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   6.5e-10   1.3e-06      17      66 ..     213     262 ..     197     292 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 6.5e-10
   TIGR00473  17 syslveavllillslilDslDGrvArktntvskfGkelDSlaDvvsFGva 66 
                 + + ++a++ + l+ ++D+lDG++A+  +++s +G  lD laD +  G +
  MMETSP1174-20130828|7950_1 213 TDQWEAAIAGVALAGFSDFLDGFIAKHYDQKSILGTFLDPLADKILVGCV 262
                 4455788889999*******************************998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1042.44
//
Query:       MMETSP1174-20130828|7956_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1372.14
//
Query:       MMETSP1174-20130828|7960_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|7959_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.9   0.0       0.02   12.3   0.0    1.2  1  TIGR02699 archaeo_AfpA: archaeoflavoprotein AfpA


Domain annotation for each model (and alignments):
>> TIGR02699  archaeo_AfpA: archaeoflavoprotein AfpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-06      0.02      40      98 ..      60     119 ..      35     127 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-06
   TIGR02699  40 eqvvkyyklydkleeefeelrveinanspflaGklqlGkydfllvapata.ntvakialg 98 
                 + v +++ l+++  +  +e+ ++in+++ +  G l++G y+f+l   +t  ntv+ +   
  MMETSP1174-20130828|7959_1  60 DGVNQWHTLVRNKSSARKEVVININSETFLNGGALRIGDYKFILEYNSTVhNTVSAVMAI 119
                 557889999999999999999999999888889***********9888762666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1202.17
//
Query:       MMETSP1174-20130828|7962_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00064   17.1   0.4       0.27    8.6   0.0    3.3  3  TIGR02191 RNaseIII: ribonuclease III


Domain annotation for each model (and alignments):
>> TIGR02191  RNaseIII: ribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   6.6e-05      0.27     149     219 .]     228     293 ..     206     293 .. 0.75
   2 !    2.7   0.0    0.0042        17     147     217 ..     373     439 ..     365     441 .. 0.85
   3 !    1.9   0.0    0.0071        29     151     217 ..     483     548 ..     470     550 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 6.6e-05
   TIGR02191 149 kkkdyKtaLqelaqaekkvlpeYelikeegpahdkeFevevvvegeilgsgkgkskkeaeqaaAkaalekl 219
                 + k + t L e+  + kk +p +  + ++ p     F ++vv+++  + +g++++k  a   aAk+al k+
  MMETSP1174-20130828|7962_1 228 RGKTAITVLHEYCARFKKGTPGFIEK-SSVP----PFGIAVVLGEVEYETGEAENKLTAKHLAAKNALRKI 293
                 55566677788888888888877443.3334....5********9999*******************9985 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0042
   TIGR02191 147 ekkkkdyKtaLqelaqaekkvlpeYelikeegpahdkeFevevvvegeilgsgkgkskkeaeqaaAkaale 217
                 ++++  +K+aL  +  + k ++peY  +  +g + +     +v++    + + k+ +++ a +aaA + l+
  MMETSP1174-20130828|7962_1 373 KTSESTMKSALNVYCAKLKISPPEYVYEVVDGTDTK----CTVILDTVEFVTVKAPQRQVATNAAAAETLK 439
                 4567889******************99999999874....899999777789***********99999887 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.0071
   TIGR02191 151 kdyKtaLqelaqaekkvlpeYelikeegpahdkeFevevvve..geilgsgkgkskkeaeqaaAkaale 217
                 + + +aL e+  + k  +p+++ +++  +   k + v+v++e  + +  +g+g++k +a  +  k+  e
  MMETSP1174-20130828|7962_1 483 RTPTSALFEICSKLKLGAPVFSQVDSMSE---KGYAVKVSLEgvDVAPRIGEGTTKVNAKHNGSKSFAE 548
                 55678999999999999999999988655...79********644455689*****9999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.67
# Mc/sec: 1769.05
//
Query:       MMETSP1174-20130828|7969_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.1   0.0      0.038   10.9   0.0    1.0  1  TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor


Domain annotation for each model (and alignments):
>> TIGR02395  rpoN_sigma: RNA polymerase sigma-54 factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.2e-06     0.038      65     171 ..      18     126 ..       5     134 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.2e-06
   TIGR02395  65 edeklteaeqqkakaeeslkehLleqvklqeltererkialaiieaLdekGyleedleeiaeele....vseeevekvleliqrLdPaGvgardlkEclllqleeleekdt 171
                 +++  +  +++ + +++s+++++++q++ + +++ + +   +  +  d++G  ++++ e++ ++e      e   e+ l+ + + d  G g  d+ E+l + +++++ ++t
  MMETSP1174-20130828|7969_1  18 WNDDXD--ASNDTLSTQSIQQSIKSQLNKSGVSQAQITEYREAFDLFDDDGSGTISTTELMTAMEahgfGGEGRGEALLQMMSEVDNDGSGTIDFDEFLGMMTSKMDAAST 126
                 333222..235567899***************9999999999***********************7777678899999*********************999999886664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 690.40
//
Query:       MMETSP1174-20130828|7970_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-44  149.8   0.1    2.3e-44  149.7   0.1    1.0  1  TIGR03674 fen_arch: flap structure-specific endonuclease
    2.4e-17   60.4   0.0    1.3e-13   48.1   0.0    2.0  2  TIGR00600 rad2: DNA excision repair protein (rad2)
  ------ inclusion threshold ------
      0.016   12.9   0.3      0.027   12.1   0.2    1.3  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.1   1.7e-47   2.3e-44      12     154 ..       2     149 ..       1     150 [] 0.94

  Alignments for each domain:
  == domain 1    score: 149.7 bits;  conditional E-value: 1.7e-47
   TIGR03674  12 eeieledlsgkvvavDalNalYqfLssirqed.....gtplkdskGritshlsGllyrtinllekgikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaakyakrsarldeeivedskkLlellgipyvqApsegE 154
                 +e el++++g+ va+Da  a+Yqf+ ++r  +      + l++++G++tsh++G++ rti+l+ +gi+pv++FDGkpp+lK+ el++R ++r +a+e+l++a+e+g +e++ k++kr  +++++   d+kkLl+l+g+p+v+Ap e+E
  MMETSP1174-20130828|7970_1   2 KEQELKNFTGRKVAIDASMAMYQFMIAVRAAEhsgqaSMNLTNEAGEVTSHIQGIFNRTIRLMTNGIRPVWIFDGKPPQLKSGELARRTSARSKAKEELKAAQESGSVEDIDKFQKRLVKVTRSQNADAKKLLRLMGVPVVEAPGEAE 149
                 6789*************************865222214689********************************************************************************************************998 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   9.4e-17   1.3e-13      20     104 ..       7     102 ..       2     107 .. 0.83
   2 !   11.0   0.0   1.5e-05     0.021     767     801 ..     116     149 ..     100     150 .] 0.83

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 9.4e-17
   TIGR00600  20 etLegKilAvDiSiWlyqalKavRDke..GNaikn.........sHlltlFrRlCKLLfFrirPvFVFDGdaPlLKrqTlakRrqRrdkasedark 104
                     g+ +A+D+S+ +yq++ avR  e  G a  n         sH+ ++F R  +L+  +irPv++FDG  P LK   la+R   r ka+e+ + 
  MMETSP1174-20130828|7970_1   7 KNFTGRKVAIDASMAMYQFMIAVRAAEhsGQASMNltneagevtSHIQGIFNRTIRLMTNGIRPVWIFDGKPPQLKSGELARRTSARSKAKEELKA 102
                 5678999*****************754336553332334555559****************************************99999998765 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.5e-05
   TIGR00600 767 qkRiadeVTgqmikEsqELLrlFGiPYivAPmEAE 801
                 qkR   +VT     +++ LLrl G+P + AP EAE
  MMETSP1174-20130828|7970_1 116 QKRL-VKVTRSQNADAKKLLRLMGVPVVEAPGEAE 149
                 5555.4799999999*******************9 PP

>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     2e-05     0.027      12      65 ..      85     137 ..      78     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2e-05
   TIGR00399  12 eeakkkekkkeeekaeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLk 65 
                 e a  + ++++++++ + ++e  +++d+ k + r++kv++ + + +++kLl+L+
  MMETSP1174-20130828|7970_1  85 ELARRTSARSKAKEELKAAQESGSVEDIDKFQKRLVKVTRSQ-NADAKKLLRLM 137
                 455666677777778888899999999999999999999876.5689*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 761.48
//
Query:       MMETSP1174-20130828|7972_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1027.63
//
Query:       MMETSP1174-20130828|7973_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-45  152.3   0.0    5.9e-45  151.8   0.0    1.1  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    1.1e-08   32.8   0.0    1.7e-08   32.2   0.0    1.3  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   0.0   2.9e-48   5.9e-45      34     215 ..     224     406 ..     198     407 .] 0.91

  Alignments for each domain:
  == domain 1    score: 151.8 bits;  conditional E-value: 2.9e-48
   TIGR03718  34 keallwslvwvalallFavlvylllgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlleeeeeedleenllvrllkkvlpvtdklegekffvr.ekgkrlatplllvlvlveltdliFAvDSiPaif 215
                 +++l    + va +l+F++ + ++ g++ a +f+t+y++E sLsvDNlfvfll+f +f+vp +l    L +Gi g++vlR+ fi +G a  ++f+ + ++f+ fl+y+++++l   eeeed e   ++  l + lp+t+++egekff   ++g + +t l  +lv++ l d++FAvDSiPa++
  MMETSP1174-20130828|7973_1 224 SNSLKSFGLLVAATLVFGGGILATRGPADAFDFFTAYVVEDSLSVDNLFVFLLLFRYFNVPPQLVDTCLNYGIGGSIVLRGFFIYAGLAAANSFAPLNLVFSGFLLYSSYQLLAGGEEEEDEEPPEVILNLLEKLPLTSTFEGEKFFAPgKDGDTQMTQLTATLVTLALCDVLFAVDSIPAVL 406
                 55666667889999*****************************************************************************************************88888888666666666779***********99626899***************************97 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   8.4e-12   1.7e-08       6     122 ..     260     405 ..     256     407 .] 0.91

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 8.4e-12
   TIGR03716   6 vvlEglLsaDnAvvlAvlvk..hLPekqrkkaLfYgliGAyvfRfialllasflik.lweikalgalYLlylalkhllkkkkekeeeekekkkek..........................keFWktvikveladlaFsvDsilaa 122
                  v+E  Ls+Dn  v+ +l +  ++P +     L Yg+ G  v+R ++++++    + ++ ++++ + +Lly +++ l+  ++e++ee  e   +                           ++  +t++++ l d+ F+vDsi a 
  MMETSP1174-20130828|7973_1 260 YVVEDSLSVDNLFVFLLLFRyfNVPPQLVDTCLNYGIGGSIVLRGFFIYAGLAAANsFAPLNLVFSGFLLYSSYQLLAGGEEEEDEEPPEVILNLleklpltstfegekffapgkdgdtqmTQLTATLVTLALCDVLFAVDSIPAV 405
                 578999********9999985568************************999877653899*******************99999999888876668899*********************999********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1627.87
//
Query:       MMETSP1174-20130828|7975_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   18.5   0.0    0.00078   17.5   0.0    1.5  2  TIGR03618 Rv1155_F420: PPOX class probable F420-dependent enzyme


Domain annotation for each model (and alignments):
>> TIGR03618  Rv1155_F420: PPOX class probable F420-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-07   0.00078      21      67 ..      13      62 ..       1      67 [. 0.85
   2 ?   -2.4   0.0      0.26   1.1e+03      40      56 ..      88     104 ..      64     106 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.9e-07
   TIGR03618 21 spqlspVwvaldp...dgdelvvsttagraKlrnlrRdPrvsllvldpdg 67
                s +ls++ +++ +   dg+++ +st+++++K   lr +  v+llv+d d+
  MMETSP1174-20130828|7975_1 13 SSHLSLMRFTYLHddlDGEVVIMSTNRKTKKFEMLRQQTGVALLVHDFDQ 62
                6799999999988889*****************************99775 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.26
   TIGR03618  40 vsttagraKlrnlrRdP 56 
                   +++++++ ++l+++P
  MMETSP1174-20130828|7975_1  88 YGVDEEKYRKAHLKHNP 104
                 45566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|7979_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-07   26.2   0.0    7.9e-07   26.2   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    8.3e-06   22.6   0.0      1e-05   22.3   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.4e-05   21.7   0.0    1.7e-05   21.3   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00037   17.6   0.0    0.00048   17.2   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   7.7e-10   7.9e-07     425     486 ..     102     166 ..       7     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 7.7e-10
   TIGR01622 425 dkeikdDvkeEcskkggvvhiyvdkk...nsaGkvYlkfdsveaalaavkalngRyFagklitAa 486
                 + e  +++ eE    g+v +  v ++    + G+vY+kf++ e+a aa+kal gR++ag+ ++  
  MMETSP1174-20130828|7979_1 102 FDEFYEEIYEELASFGKVEECNVCENlgdHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAVE 166
                 45888999999999999988777654222789***************************976655 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     1e-08     1e-05     521     594 ..      99     166 ..      90     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1e-08
   TIGR01645 521 PkdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                  +d de+  +ei ee + fg v+   + ++  g      i+  ++v+f +  ++d a +al Grf++Gr +  e
  MMETSP1174-20130828|7979_1  99 ADDFDEFY-EEIYEELASFGKVEECNVCEN-LG----DHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAVE 166
                 56778776.69***********99766543.33....58999***************************88776 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.7e-08   1.7e-05     428     505 ..     100     173 ..      78     177 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.7e-08
   TIGR01642 428 eeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedky 505
                 ++++e +e++ ee   +G++ + ++    +d+     vG v++++ d+++a+ A + l Gr +++r + + f +   +
  MMETSP1174-20130828|7979_1 100 DDFDEFYEEIYEELASFGKVEECNVCENLGDHI----VGNVYVKFEDEENADAALKALLGRFYAGRPLAVEFSPVTDF 173
                 57889999999999*************999986....9****************************999999876655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.7e-07   0.00048     300     373 ..     107     180 ..      96     190 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.7e-07
   TIGR01628 300 ekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqq 373
                 e++ e+   fG++  ++v  +  ++  g  +V f ++e+A +A++ l g+   g+PL v +    + R ar +q
  MMETSP1174-20130828|7979_1 107 EEIYEELASFGKVEECNVCENLGDHIVGNVYVKFEDEENADAALKALLGRFYAGRPLAVEFSPVTDFREARCRQ 180
                 5677888999*******9999999999999***************************99998877777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1010.22
//
Query:       MMETSP1174-20130828|7978_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1565.66
//
Query:       MMETSP1174-20130828|7982_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.2   0.5      0.062    9.7   0.0    1.8  2  TIGR00728 OPT_sfam: oligopeptide transporters, OPT superfamily


Domain annotation for each model (and alignments):
>> TIGR00728  OPT_sfam: oligopeptide transporters, OPT superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.5e-05     0.062     349     422 ..      47     123 ..       6     127 .. 0.81
   2 ?   -0.7   0.0      0.02        84     246     263 ..     171     188 ..     136     206 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.5e-05
   TIGR00728 349 srrkkvklkrdddvrllkrdedlkv....mknykevpewwylslllvslglgivvveilfgktqlpvwgvilaliial 422
                 +r k +k+  +++v++++r+ dlk       +y+   +ww + ++++ ++l+ v+ + ++g+ +l +++v++ +ii l
  MMETSP1174-20130828|7982_1  47 ARMKISKEDVETAVKIRNRNADLKPlgflFDAYEPEFWWWEIEVCVSRVLLTNVS-KFFNGNAELVIYVVLTIVIIKL 123
                 33333444458888899999999889999559*************9999988765.9999*****9999999888876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.02
   TIGR00728 246 tvilnmllGvilafgivl 263
                  v+ln+ll+ +l f++++
  MMETSP1174-20130828|7982_1 171 EVVLNLLLSGLLLFFVIM 188
                 244444444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1206.11
//
Query:       MMETSP1174-20130828|7984_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|7990_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1174-20130828|7991_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|7992_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1269.42
//
Query:       MMETSP1174-20130828|7995_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 151.99
//
Query:       MMETSP1174-20130828|7993_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 942.78
//
Query:       MMETSP1174-20130828|7996_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   10.7   0.0      0.047   10.5   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.2e-05     0.047      46     121 ..      22     103 ..      13     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.2e-05
   TIGR00225  46 tsgeleGiGiqvqmedd.....eivivsplegsPAekagikpgDkIikvdgksvagmelddavelirG.kkgtkvkleiera 121
                 +s+ +  +G++vq +       + v+vs +      +ag+k gD+I + +g+ + g+  ++a   ++   + +kv le+ r 
  MMETSP1174-20130828|7996_1  22 ISSMYAPLGMTVQPDTTmacpnHPVVVSGFITEICSNAGVKIGDRIHGANGACIEGIPFNEALPVLQRlWNAAKVVLEVRRH 103
                 566677788888888877788777788888888899**************************99886515678999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|7998_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|8001_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|8000_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.0   0.0    0.00015   18.5   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
    0.00034   17.5   0.1    0.00061   16.6   0.0    1.4  2  TIGR02037 degP_htrA_DO: peptidase Do
    0.00036   17.5   0.0    0.00055   16.9   0.0    1.2  1  TIGR00225 prc: C-terminal processing peptidase
      0.007   12.2   0.0      0.011   11.6   0.0    1.2  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07   0.00015     206     279 ..      71     152 ..      58     162 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
   TIGR00054 206 lsdvvdnspaekaGlkeGDkilkidgekl....kswrdlvklvkenpeksleikveRnge.tlslklvpea...kgkigvgl 279
                 +++v + spa+k Gl+ GD+i++    ++    k+   + +++  n++  ++ik+ R  + ++ + ++p++   kg +g  +
  MMETSP1174-20130828|8000_1  71 VKKVLPDSPAHKGGLQDGDRIISFGHIQAsnqgKNLSGVASFLDTNNGRCVSIKLVRLHRgVITVFMTPNSwagKGSLGCSF 152
                 68999******************876655111155677899*************9995441677778888884444455555 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     6e-07   0.00061     263     316 ..      71     127 ..      68     147 .. 0.76
   2 ?   -3.1   0.0       0.6   6.1e+02     348     370 ..     194     217 ..     165     249 .. 0.50

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6e-07
   TIGR02037 263 vaevlkgspAekaGlkaGDvilkvngkkiksaadlreaig...tlkpgkkvklkilR 316
                 v +vl++spA+k+Gl+ GD i+++   + +++ +  + ++   +++ g+ v++k++R
  MMETSP1174-20130828|8000_1  71 VKKVLPDSPAHKGGLQDGDRIISFGHIQASNQGKNLSGVAsflDTNNGRCVSIKLVR 127
                 899*********************988777766655555411134555666666655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.6
   TIGR02037 348 lsvadlseeaakk.kkskeekkgv 370
                  s+++l+ ++++  + ++++ + v
  MMETSP1174-20130828|8000_1 194 KSLHQLTTDKKQAlRFDNDKPRMV 217
                 344455544444422223333333 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.3e-07   0.00055      65     124 ..      70     130 ..      58     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.3e-07
   TIGR00225  65 vivsplegsPAekagikpgDkIikvdgk..svagmelddavelirGkkgtkvkleieragkk 124
                 +++++l +sPA+k g++ gD+Ii+ +    s +g++l  +++ +  ++g  v++++ r   +
  MMETSP1174-20130828|8000_1  70 EVKKVLPDSPAHKGGLQDGDRIISFGHIqaSNQGKNLSGVASFLDTNNGRCVSIKLVRLH-R 130
                 58899*******************99544499***********************99974.3 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     1e-05     0.011     155     178 ..      71      94 ..      69     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1e-05
   TIGR03900 155 VlrvlpetPAaraGlkakDrivki 178
                 V +vlp++PA++ Gl++ Dri+  
  MMETSP1174-20130828|8000_1  71 VKKVLPDSPAHKGGLQDGDRIISF 94 
                 679******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|7999_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2601.65
//
Query:       MMETSP1174-20130828|8002_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-53  177.0   0.0    8.8e-53  176.7   0.0    1.1  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
    0.00085   17.1   0.0     0.0014   16.4   0.0    1.4  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit
     0.0037   14.4   0.0     0.0069   13.5   0.0    1.4  2  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7   0.0   6.4e-56   8.8e-53      10     176 .]      45     199 .]      34     199 .] 0.90

  Alignments for each domain:
  == domain 1    score: 176.7 bits;  conditional E-value: 6.4e-56
   TIGR01416  10 ataavgavgaaavavplikslnpsakvkaagasvevdvskleegqlltvewrgkpvfilrrtkeeleelkalkkkeLkdpnseaeqtdearelrsgkeewlvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpykfesdtkilig 176
                 +t  v a ++ + ++ +++s++ s++v+a+ as e ++s+++ gq++tv+wrgkpvfi rrt ee+++ +++  ++L+dp     + d+    r +++ewl++++iCtHLGC+P ++ + g++gg+fCpCHgs+yd++gr++kg PaP nl++Ppy+f+sd+++++g
  MMETSP1174-20130828|8002_1  45 GTRFVYASAVRLGVINFVSSMSASKDVLAL-ASAEFNLSAIDVGQTVTVKWRGKPVFIKRRTPEEIATCEEVPLSALRDP-----EDDAS---RAERSEWLICLAICTHLGCVP-IS-NAGEYGGWFCPCHGSHYDASGRIRKG-PAPLNLEIPPYAFTSDDVVVLG 199
                 455677778888899***************.99***********************************************.....44444...445799***************.55.7999**********************.******************9987 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-06    0.0014      56      95 ..     140     178 ..     120     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1e-06
   TIGR02694  56 ilcthkGc.pvsyeadaktfkcpchfsvfdpekaGqqvlGq 95 
                 ++cth Gc p+s   + + + cpch s +d    G+   G 
  MMETSP1174-20130828|8002_1 140 AICTHLGCvPISNAGEYGGWFCPCHGSHYDAS--GRIRKGP 178
                 79*****989******************9964..5555555 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.77   1.1e+03      17      47 ..      68      98 ..      65     125 .. 0.58
   2 !   13.5   0.0     5e-06    0.0069     231     265 ..     139     173 ..     136     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.77
   TIGR02088 17 airilnekldlelelieleaGleal.kkyGea 47
                ++ +l+     e++l+ ++ G+++  k  G++
  MMETSP1174-20130828|8002_1 68 SKDVLA-LASAEFNLSAIDVGQTVTvKWRGKP 98
                556665.4456777777777766541334555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 5e-06
   TIGR02088 231 aalvGslGlaPsaniGdkkalfePvhGsapdiaGk 265
                  a+   lG +P +n G+    f P hGs +d +G+
  MMETSP1174-20130828|8002_1 139 LAICTHLGCVPISNAGEYGGWFCPCHGSHYDASGR 173
                 567788*************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1010.22
//
Query:       MMETSP1174-20130828|8006_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1479.88
//
Query:       MMETSP1174-20130828|8004_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 1898.61
//
Query:       MMETSP1174-20130828|8007_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1296.94
//
Query:       MMETSP1174-20130828|8003_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|8005_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.3  10.3      0.033   10.6   7.1    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.1     8e-06     0.033      42     109 ..     703     770 ..     693     791 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8e-06
   TIGR00990  42 avavvvigagvvyylrkgqeqkeskpklskkerrkrkdaekeaekkaeekkstapkaaavesadelpe 109
                 + ++v   a   +++ +++++ke++++  kk  +k k  +kea k+a+ k + +pkaa v      p 
  MMETSP1174-20130828|8005_1 703 GFSAVGNNAFSAFNQDEKKKKKEKNDEKRKKKEKKEKREKKEASKAAASKVAAQPKAAVVPVSAPEPT 770
                 556677788899999999999999999888888899999999999999999****9987654433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.66
# Mc/sec: 1945.84
//
Query:       MMETSP1174-20130828|8009_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1645.46
//
Query:       MMETSP1174-20130828|8010_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|8012_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1231.90
//
Query:       MMETSP1174-20130828|8016_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-23   81.2   0.0    1.5e-23   81.0   0.0    1.0  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
      1e-08   33.2   0.0    1.6e-08   32.6   0.0    1.3  1  TIGR00201 comF: comF family protein
    2.9e-07   28.2   0.0    4.8e-07   27.5   0.0    1.3  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
    0.00059   17.3   0.2    0.00095   16.7   0.1    1.2  1  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
    0.00086   17.3   0.3     0.0018   16.3   0.1    1.5  2  TIGR01090 apt: adenine phosphoribosyltransferase
     0.0047   14.5   0.1     0.0072   14.0   0.1    1.2  1  TIGR00336 pyrE: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.2e-26   1.5e-23     122     294 ..      23     206 ..       4     208 .] 0.81

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 2.2e-26
   TIGR01251 122 vltvdlHseqiqgfFd.vpvenlsaspklieelkkke...lknlvvvs...PDkGaverakkvakklglelaiieKeRdskenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgvfsgdAlerlaeag....veevivtntilv.ee..kklpkvseisvapliaea 294
                 +l+ d+H+ q + + +   +++l++   l++e+ +      +++++ s   PD+Ga++r  ++ ++ + +  i  K+R  ++  v vt  +gdv+gk+v+ivDD+ +TggTl + a++L  +GA++v + + hgvf +++  r+ + g    +++ +vtn++++      + + ++++++ pli+  
  MMETSP1174-20130828|8016_1  23 LLVYDIHTLQNRFYLShNTIAQLESTIPLLKEVLSARsgsTEEPTIDSiafPDDGAAKRFGEMLDEFK-PHIICGKHRVGDA-RV-VTINDGDVAGKHVLIVDDLCQTGGTLHECAKALLAQGASSVSAFCAHGVFPNQSWRRFLRTGdrgiFDTFYVTNSLPSiVGaiPTDDVFQVMDIMPLIVGD 206
                 567899998887665557788898888777777766668855555433334*******9999999987.556889****444.44.44558******************************************************9999999***********963345566678889999998755 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.3e-11   1.6e-08     147     187 ..     110     150 ..      92     152 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 2.3e-11
   TIGR00201 147 vkevqgrkivlvDDvvttGatlaeiaklllklgaaevqvls 187
                   +v g+++ +vDD+  tG tl+e+ak ll +ga +v+ ++
  MMETSP1174-20130828|8016_1 110 DGDVAGKHVLIVDDLCQTGGTLHECAKALLAQGASSVSAFC 150
                 33899**********************************98 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   6.9e-10   4.8e-07      69     117 ..      99     147 ..      94     151 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 6.9e-10
   TIGR01203  69 ssgevkilkdldedikdkdvLlveDivdtgltlkellellkarkpkslk 117
                   g+ +++   d d+ +k+vL+v+D+ +tg tl+e  + l a+++ s+ 
  MMETSP1174-20130828|8016_1  99 RVGDARVVTINDGDVAGKHVLIVDDLCQTGGTLHECAKALLAQGASSVS 147
                 66899************************************99999875 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.4e-06   0.00095     105     140 ..     115     150 ..     105     155 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-06
   TIGR01367 105 GekvvvveDvvttGgsakeaikiieelGgqvvglaa 140
                 G++v++v+D+  tGg+++e++k++  +G++ v++ +
  MMETSP1174-20130828|8016_1 115 GKHVLIVDDLCQTGGTLHECAKALLAQGASSVSAFC 150
                 899**************************9998766 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.9     2e+03      17      39 ..      24      46 ..      18      51 .. 0.69
   2 !   16.3   0.1   2.6e-06    0.0018     108     140 ..     114     147 ..     100     152 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.9
   TIGR01090 17 lFrDitpllenaelfrllidqlv 39
                l +Di +l +   l + +i ql 
  MMETSP1174-20130828|8016_1 24 LVYDIHTLQNRFYLSHNTIAQLE 46
                56777777777777677776665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.6e-06
   TIGR01090 108 kgkrvlivDDllAtgGtveAale.Likklgaevv 140
                 +gk+vlivDDl  tgGt++  ++ L+++  + v 
  MMETSP1174-20130828|8016_1 114 AGKHVLIVDDLCQTGGTLHECAKaLLAQGASSVS 147
                 689**************97665515555555554 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.1e-05    0.0072     107     141 ..     114     148 ..      99     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR00336 107 egkkvvvveDvittGtsileaveaiqeagaevagv 141
                  gk v++v+D+  tG+ + e ++a+ + ga+ + +
  MMETSP1174-20130828|8016_1 114 AGKHVLIVDDLCQTGGTLHECAKALLAQGASSVSA 148
                 588**********************9999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 980.49
//
Query:       MMETSP1174-20130828|8013_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1174-20130828|8017_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 2383.57
//
Query:       MMETSP1174-20130828|8011_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-192  637.4   0.0   6.4e-192  637.2   0.0    1.0  1  TIGR00418 thrS: threonine--tRNA ligase
    1.8e-16   58.0   0.1    6.4e-08   29.7   0.0    2.1  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    4.5e-16   56.7   0.4    1.1e-13   48.7   0.0    2.2  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    5.9e-15   52.6   0.0    0.00013   18.4   0.0    3.2  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    8.8e-15   52.4   0.0    1.3e-06   25.4   0.0    2.2  2  TIGR00442 hisS: histidine--tRNA ligase
    7.2e-09   32.9   0.0    1.2e-08   32.2   0.0    1.2  1  TIGR00414 serS: serine--tRNA ligase
    0.00011   19.5   0.0    0.00026   18.3   0.0    1.6  1  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
     0.0011   15.1   0.0     0.0018   14.4   0.0    1.2  1  TIGR00344 alaS: alanine--tRNA ligase
  ------ inclusion threshold ------
      0.013   11.7   0.0      0.024   10.9   0.0    1.3  1  TIGR00415 serS_MJ: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.2   0.0  1.4e-194  6.4e-192       1     562 [.     186     745 ..     186     748 .. 0.97

  Alignments for each domain:
  == domain 1    score: 637.2 bits;  conditional E-value: 1.4e-194
   TIGR00418   1 rhsiahllaeavkklyleeklavgpvvedgfyyd.vevekelaeedlekiekelkelakkklpvaklsvsleeakeafkvleklklelldeieeeeekvtvyeqgkafvdlckgphlselsrikafklekvagaywlgdekneelqriygiafekkkeLkeylkakeeakkrdHrklgkeleLfsfeeevgpGlvlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvelstrdpedkyigedeewekaeakleealkelev..eyeieegeaafygpKidfaikdaLkreiqlaTvQlDfelperfdltyvded...ekekrPviiHrailGsieRfiaiLlEkaagelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvr 562
                 +hs+ah+l+ea ++  +  +l++gp++ +gfyyd +  +++l+e+++++i +e+  ++kkk+ +++l+v++eea+e+f+ ++++k++l+ ++ ++++++tvy++g+ ++dlc+gph+ +++++kaf+ ++++g+ wlg+  n+ lqr+yg++f +kk+Lk++++++e+akkrdHr +g +++Lf+f+ e +pG  +wlp+Ga+i++ l  f+r ++ +rgy ev++P++ +++lwe+sgh+d+y++ mf f  e  +++ lkpmnCpgh l+f +++rsyrdLP+r a++gv+hR+E sG+L GL+RvR+f++dDaHifc+ dQi+eEi +al++++ v++ +g+s +k+elstr p+++ ige+  w+ aeakl++a++ +     +++++g++afygpKid++++da++r +q+aT+QlDf  p rf+l+y+++    e+ +rPv+iHra+lGs+eR+ a+L+E+++g++P+wL+P Qv v+pv++++ dya++v   ++k+g +v+++ ++++++kk+R+ q ++ +y+lvvG+kE ++++v+vR r++e k  +sl+ l  + +
  MMETSP1174-20130828|8011_1 186 WHSSAHMLGEA-LEHIFGSHLTIGPPTTAGFYYDsFMGDTSLSEANFKAIDSEVSGIIKKKQVFERLEVTKEEALELFH-YNPFKVQLITAKVPDGTRTTVYRCGD-LIDLCRGPHVVHTGKVKAFATLRTSGTTWLGLDDNDPLQRVYGVSFPDKKQLKAHKQHLEDAKKRDHRAIGIQQKLFMFN-ELSPGAAFWLPHGARIYNKLMSFIRAQYWDRGYTEVISPNMFNKKLWEKSGHWDNYEDCMFSFDVEG-QKFSLKPMNCPGHALMFADATRSYRDLPMRYADFGVLHRNELSGALRGLTRVRRFQQDDAHIFCRPDQIEEEIVAALEFMKFVYDVFGMS-YKLELSTR-PNKA-IGEKAIWDVAEAKLASAMDTFAGvgGWKVNPGDGAFYGPKIDIKVMDAMERVHQCATIQLDFMHPIRFNLRYKTASdnaENFERPVMIHRAMLGSVERMAAVLIEHFGGKWPFWLSPRQVLVVPVKDSVNDYAQEVGAAVHKAGYYVETELSGDTMQKKVRNGQLSQFNYILVVGEKEKTDKTVNVRLRNNEVKGVVSLDGLFAMFQ 745
                 79********8.6778899**************94556899**************************************.**************************.********************************************************************************.9************************************************************988876.*****************************************************************************************9.********.9986.*******************9875237**********************************************876534466789**************************************************************************************************************9999998876655 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.4e-10   6.4e-08      29     200 ..     374     538 ..     361     550 .. 0.88
   2 !   26.2   0.0   1.7e-09   7.6e-07     217     384 ..     589     751 ..     571     752 .] 0.83

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.4e-10
   TIGR00408  29 GlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkh.trPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekF 200
                 G   +lp++ +i++k++++++ +    +  ev  P +  ++++ek   H + +e+ ++  +  G+     k+ l+P        +++  ++syrdLP+++  +    R E     r l R+r f   +aH ++   ++ eee++++l++ k +++   ++ + + + +  +k 
  MMETSP1174-20130828|8011_1 374 GAAFWLPHGARIYNKLMSFIRAQYWDRGYTEVISPNMFNKKLWEKS-GHWDNYEDCMFSFDVEGQ-----KFSLKPMNCPGHALMFADATRSYRDLPMRYADFGVLHRNELSGaLRGLTRVRRFQQDDAH-IFCRPDQIEEEIVAALEFMKFVYD-VFGMSYKLELSTRPNKA 538
                 8899******************99999**********999999985.69*************997.....68999999999999**************************875169*********99999.899999*************99998.77777766666655555 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.7e-09
   TIGR00408 217 ralqiatsHdLgqnFaktFeikfenkeg......ekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkelleel 384
                 r  q+at  +L       F++++++ ++      + ++ ++   G  +R+ ++li      +G   P+ ++p qv v+p       +++v ++a++v  +++k+++ ve + + +++ kk  ++ l      l vg k+++ ++v+v  R+++ K +vsld l + ++e ++++
  MMETSP1174-20130828|8011_1 589 RVHQCATI-QLDFMHPIRFNLRYKTASDnaenfeRPVMIHRAMLGSVERMAAVLIE----HFGGKWPFWLSPRQVLVVP------VKDSVNDYAQEVGAAVHKAGYYVETELSGDTMQKKVRNGQLSQFNYILVVGEKEKTDKTVNVRLRNNEVKGVVSLDGLFAMFQEHIDKY 751
                 55566665.45555555677777765544555656678899999999998887775....467778*************......335799******************************************************************************99987 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.5e-16   1.1e-13      30     181 ..     366     520 ..     339     538 .. 0.82
   2 !    6.1   0.0     0.002      0.93     463     560 ..     645     739 ..     631     747 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 2.5e-16
   TIGR00409  30 GfirrlasGlynylPlalrvlekvenivreemnkagaievllpalqsaelWqesgRwdkygeellrlkDrkerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPR.fGllRgREFimKDaYsFhsd...eeslkatyqkldeaY 181
                  +  +l+ G   +lP + r+ +k+   +r +  + g  ev+ p++ +++lW++sg wd+y + ++ + D ++++f L p        + ++  +sY++lP+        +R+E+     Gl R R F   Da  F      ee++ a  + ++ +Y
  MMETSP1174-20130828|8011_1 366 FMFNELSPGAAFWLPHGARIYNKLMSFIRAQYWDRGYTEVISPNMFNKKLWEKSGHWDNYEDCMFSF-DVEGQKFSLKPMNCPGHALMFADATRSYRDLPMRYADFGVLHRNELSGAlRGLTRVRRFQQDDAHIFCRPdqiEEEIVAALEFMKFVY 520
                 455667778889************************************************9999999.899**********999999**************************986526**************99753111455555555555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.002
   TIGR00409 463 kGiiWpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikkae 560
                  G  Wp  + P +v +v+  vkd +++++a+ev + ++++g+ v  +   + +  k+r+ +l    + +vvG+k+  +k ++v+ r+n+ k  ++ + 
  MMETSP1174-20130828|8011_1 645 FGGKWPFWLSPRQVLVVP--VKD-SVNDYAQEVGAAVHKAGYYVETELSGDTMQKKVRNGQLSQFNYILVVGEKEKTDKTVNVRLRNNEVKGVVSLDG 739
                 477899999**9998775..566.899***************9999999999999*******************************998887776655 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.9e-05    0.0088      32      86 ..     378     431 ..     362     442 .. 0.87
   2 !   18.1   0.0   3.7e-07   0.00017     159     225 ..     441     507 ..     433     520 .. 0.78
   3 !   18.4   0.0   2.9e-07   0.00013     465     564 ..     649     747 ..     647     748 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.9e-05
   TIGR00389  32 ygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalve 86 
                 + P Ga + n++++  r ++  +++  ev sp + +++++  sGH d++ D +  
  MMETSP1174-20130828|8011_1 378 WLPHGARIYNKLMSFIRAQY-WDRGYTEVISPNMFNKKLWEKSGHWDNYEDCMFS 431
                 5699*************999.567899*************************976 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.7e-07
   TIGR00389 159 lRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEispr.qgllRvrEFeqaEiefFvdPeeksh 225
                 l+P    G  + F    ++  + lP   a++G  +RnE+s    gl Rvr F+q +  +F+ P++ ++
  MMETSP1174-20130828|8011_1 441 LKPMNCPGHALMFADATRSY-RDLPMRYADFGVLHRNELSGAlRGLTRVRRFQQDDAHIFCRPDQIEE 507
                 66666666666666655544.579***************96538*******************55444 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 2.9e-07
   TIGR00389 465 lkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgsiGkrYaraDeiG.tpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkkl 564
                  +++++P +vlv+p+ +   ++  a+e+  a+ k +++++ + sg   ++  r+ ++   ++ + +  +   D+tv +R R++  +  v+++ l ++++++
  MMETSP1174-20130828|8011_1 649 WPFWLSPRQVLVVPVKDS--VNDYAQEVGAAVHKAGYYVETELSGDTMQKKVRNGQLSqFNYILVVGEKEKTDKTVNVRLRNNEVKGVVSLDGLFAMFQEH 747
                 5899**********9666..9************************97777777877762689999999999*************99999999999999876 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.1e-09   2.3e-06       9     164 ..     378     536 ..     372     560 .. 0.84
   2 !   25.4   0.0   2.9e-09   1.3e-06     322     395 ..     653     726 ..     632     736 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5.1e-09
   TIGR00442   9 llpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkk.pfklyyigpvFRyErpqk....GRyRqFhQldvevvGsesp..ladaeiialaaelleelglkevtleinslgi 164
                 +lp+ a++ +k+++ ir+ + + g++e+  P + + +l +++ G + d  e  m+sf+  +g++++L+p    + + ++++  ++++  p+++  +g + R+E   +     R+R F Q d+ ++   +   +  +  +++++ +++ +g+ +++le++++ +
  MMETSP1174-20130828|8011_1 378 WLPHGARIYNKLMSFIRAQYWDRGYTEVISPNMFNKKLWEKS-G-HWDNYEDCMFSFDV-EGQKFSLKPMNCPGHALMFADATRSYRDlPMRYADFGVLHRNELSGAlrglTRVRRFQQDDAHIFCRPDQieEEIVAALEFMKFVYDVFGM-SYKLELSTRPN 536
                 89999****************************999999987.4.5588********76.668*****************999888877**************9876444479************98884234456677778888888888.88999988865 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.9e-09
   TIGR00442 322 kkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkd 395
                  +  +vlvv+++++ +++a+++ +++ kag+ ve++l+g+ ++k++++ + +++++++++ge+e ++++v+++ 
  MMETSP1174-20130828|8011_1 653 LSPRQVLVVPVKDSVNDYAQEVGAAVHKAGYYVETELSGDTMQKKVRNGQLSQFNYILVVGEKEKTDKTVNVRL 726
                 56789*****************************************************************9985 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.7e-11   1.2e-08     117     319 ..     320     528 ..     310     535 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.7e-11
   TIGR00414 117 gkdeednl...........evkkegekksfdfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdllekkgysevvvPvlvnkellsgtgqlpkfeedif..kvededlyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpeesaeeleeliedaekilkeLelPyr 319
                 g d++d+l           ++ k  +++  d k++dH  ++ +++l  f++ +   g+   + + +ga++ + L++f   +  ++gy+ev+ P + nk+l ++ g+  ++e+ +f   ve ++  L +      a + a+   + ++lp++ya ++  +R+E        +Gl Rv  F+  +   f++p++  ee  + +e+ + ++   ++ y+
  MMETSP1174-20130828|8011_1 320 GLDDNDPLqrvygvsfpdkKQLKAHKQHLEDAKKRDHRAIGIQQKLFMFNELSP--GAA--FWLPHGARIYNKLMSFIRAQYWDRGYTEVISPNMFNKKLWEKSGHWDNYEDCMFsfDVEGQKFSLKPMNCPGHALMFADATRSYRDLPMRYADFGVLHRNELSG---ALRGLTRVRRFQQDDAHIFCRPDQIEEEIVAALEFMKFVYDVFGMSYK 528
                 666666666666666654344445555677788889999998888888876553..444..456789***********99999****************************9986226888889999998888888999999999*****************643...369*********************999998888888888888888776 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.6e-07   0.00026      31     121 ..     389     481 ..     382     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 5.6e-07
   TIGR02367  31 lerelakalvdrGfvevkspiliskellekmtideddelfkqvfrvde.kkclrpmlapnlynllrkldrllek.pirifeiGscyrkesdGs 121
                 l   + + + drG+ ev sp + +k+l ek +  ++ e     f v++ k+ l+pm  p    ++ +  r + + p+r  + G  +r e  G+
  MMETSP1174-20130828|8011_1 389 LMSFIRAQYWDRGYTEVISPNMFNKKLWEKSGHWDNYEDCMFSFDVEGqKFSLKPMNCPGHALMFADATRSYRDlPMRYADFGVLHRNELSGA 481
                 5556777889**********************99999999999999962679******************99766**************9886 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06    0.0018     554     681 ..     184     316 ..     156     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.9e-06
   TIGR00344 554 kknHsatHllhaalkkvlgehvkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkkgalalfgeky.......gekvRvvsvgdvsvelCgGtHvenTgeiglfkIvkeegi 681
                    Hs  H+l  al ++ g+h++  G   +a      f     +++++ k++++ v  +i+++   +   +  eea +++    f+ +        g +  v + gd  ++lC G Hv +Tg+++ f  ++++g+
  MMETSP1174-20130828|8011_1 184 VFWHSSAHMLGEALEHIFGSHLT-IGPPTTAGFYYDSFMGDTSLSEANFKAIDSEVSGIIKKKQVFERLEVTKEEALELFHYNPFKVQLitakvpdGTRTTVYRCGD-LIDLCRGPHVVHTGKVKAFATLRTSGT 316
                 556******************97.577777776666799999******************99999999999999999988766666554444446666777999999.7******************99998875 PP

>> TIGR00415  serS_MJ: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.3e-05     0.024     309     405 ..     439     536 ..     433     544 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.3e-05
   TIGR00415 309 yvlapaqcepfyqflegevvd.vdkpvkffdrsgwtyrweagga.kgldrvneflrvelvwlaepeeveeirdktlklaedlaekleleyyvevgddpf 405
                 + l p +c     ++ +   +  d+p+++ d  g  +r e  ga +gl rv+ f++ +   ++ p+++ee    +l++ + + + + + y  e+   p 
  MMETSP1174-20130828|8011_1 439 FSLKPMNCPGHALMFADATRSyRDLPMRYADF-GVLHRNELSGAlRGLTRVRRFQQDDAHIFCRPDQIEEEIVAALEFMKFVYDVFGMSYKLELSTRPN 536
                 56778888877777777777779****99995.778888865544*************************99999999999999999999888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.57
# Mc/sec: 1711.31
//
Query:       MMETSP1174-20130828|8014_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1082.99
//
Query:       MMETSP1174-20130828|8019_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1034.79
//
Query:       MMETSP1174-20130828|8018_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-120  398.4   0.0   5.8e-120  398.2   0.0    1.1  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    5.2e-33  112.5   0.0    6.3e-33  112.3   0.0    1.0  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.2   0.0  2.8e-123  5.8e-120       2     337 ..      76     410 ..      75     411 .. 0.99

  Alignments for each domain:
  == domain 1    score: 398.2 bits;  conditional E-value: 2.8e-123
   TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklkevdvekeleyvleaikllreeleeevpliGFaGaPfTlasYlieGggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkvalQGnldPavllaskealeekvekilealkegksryifNlGHGilpetppenvkalvelvh 337
                 ll+a+kge+v+r+PvW+mRQaGR ++ Yrel+++++ f+e ++++d+  e+++qP r+++ D++IlFsDIl++l+++++e+e+ ++ gpv+++p r++e ++++++ d +k++++v+e +++lr+e+ ++++++GF+G P+Tla+Yl+eG +sk++ ++kk+  ++pe l+++l++++d + +Y ++Q+++Ga+++q+Fdswag+Ls++d++ef+lpy +++++++k++ +++Pvi+++k++g+lle+++ +gad+v++Dw+v+++ea++++++++ lQGnldPavll +++ ++e++e+il++++    ++++NlGHGi   tp+en k++v++v+
  MMETSP1174-20130828|8018_1  76 LLRAAKGEAVERTPVWMMRQAGRHMAVYRELCKTYTTFRERSETTDVSFEISMQPYRAYKTDGVILFSDILTPLPGMNVEFEIDDKRGPVIKDPYRTKERIDTITRLDSAKACPFVGEVLQKLRAEVGNDATVLGFVGLPYTLATYLVEGATSKEYLEIKKMGLKQPELLHQMLKAIADNIGDYANYQIESGAQVIQVFDSWAGHLSPRDYDEFALPYQQQVVAAIKAKhPETPVIIYIKQSGALLERMKLSGADIVSVDWTVSIDEARARLGPEMGLQGNLDPAVLLGPHDQIKERTEEILKKTGG--LGHVMNLGHGIEATTPEENAKFFVDTVK 410
                 79**********************************************************************************************************************************************************************************************************************************955************************************************************************8876..69************************98 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   3.1e-36   6.3e-33       9     337 ..      76     411 ..      72     414 .. 0.86

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 3.1e-36
   TIGR01463   9 llaAvekqrvdkvppcvvtq....tatvelmeecgaawpeAhsdaeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenlllkegripvvleaikilrekygdelpiigslegPitlAsqlig...veeflkyls...tdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikei..dsvtvlHiCgktskilsdiaksGveglsvdekvgvaeakkvigdeislvGnldpvsvllnGtaekvkklakevlea..G.vdivapgCdiasmtpleNlkalveacke 337
                 ll+A +++ v++ p+ ++ q    +a+ + + ++  ++ e    ++++ ++ +++y+    + v+l  d+ ++   ++ e ++ +k r +v+k+P+ +++  +     l   +   p v e  + lr+ +g++  + g ++ P tlA  l+    ++e+l+  +   ++p+l++++l + ad    ya+ ++e Ga+vi++ D  a    lsp  y ef+lpyq+++va+ik    +++ ++ i  +  ++l+ ++ sG + +svd  v ++ea+  +g e+ l Gnldp  +l  G+ +++k++++e+l++  G + ++  g +i+ +tp+eN k +v++ k+
  MMETSP1174-20130828|8018_1  76 LLRAAKGEAVERTPVWMMRQagrhMAVYRELCKTYTTFRERSETTDVSFEISMQPYRAYKTDGVILFSDILTPLPGMNVEFEIDDK-RGPVIKDPYRTKER-IDTITRL-DSAKACPFVGEVLQKLRAEVGNDATVLGFVGLPYTLATYLVEgatSKEYLEIKKmglKQPELLHQMLKAIADNIGDYANYQIESGAQVIQVFDSWAGH--LSPRDYDEFALPYQQQVVAAIKAKhpETPVIIYI-KQSGALLERMKLSGADIVSVDWTVSIDEARARLGPEMGLQGNLDPAVLL--GPHDQIKERTEEILKKtgGlGHVMNLGHGIEATTPEENAKFFVDTVKN 411
                 78899999999999988877222235667788888889999999999*******************************99999775.6679999*999865.5666667.678889*******************************9886522278888655433389**********************************99976..9*******************98651155666666.57789****************************************8776..9************9862132357889******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1335.99
//
Query:       MMETSP1174-20130828|8022_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.2e-246  816.1  10.4   6.2e-246  815.9   7.2    1.0  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
   2.3e-128  426.2   3.0   3.5e-128  425.6   2.1    1.2  1  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase
    1.9e-55  186.3   3.1    5.5e-44  148.6   0.0    2.3  2  TIGR01027 proB: glutamate 5-kinase
    5.1e-11   40.4   0.1    9.6e-11   39.5   0.0    1.4  1  TIGR00761 argB: acetylglutamate kinase
    1.6e-06   25.7   0.2    4.8e-06   24.2   0.0    1.9  2  TIGR02076 pyrH_arch: putative uridylate kinase
      9e-05   19.5   0.8    0.00017   18.6   0.0    1.7  2  TIGR00746 arcC: carbamate kinase


Domain annotation for each model (and alignments):
>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  815.9   7.2    9e-249  6.2e-246       4     709 ..      19     751 ..      17     752 .] 0.94

  Alignments for each domain:
  == domain 1    score: 815.9 bits;  conditional E-value: 9e-249
   TIGR01092   4 vkdvkrivvkvGtavvtrkderlalGrlasiveqlselnsdGfevilvtsGavalGrqrlryrklvnssvadllksq...........veldakacaavGqsglmalyetlfsqldvtaaqllvtdsdfrdedfrkqlsetvkellrlkvvpvlnendavstrkapyedssGivkdndslaallalelkadllillsdveGlydgppsdddsklidifvkekhqdeitfGeksrlGrGGmeakvkaavyaaygGvsv.iiasGkaaenitkv.veGkkvGtlfsedahl.....watveetgerdmavaaressrklqalsseerkeilhdladaleaneeeilaenekdvaaaeeagyeeslvarlalkpsklsslaislrqlae.sedsiGrvlkrtriaddlilekvsvpiGvllivfesrpdalvqiaslairsGnGlllkGGkeakrsnailhkvitealse....kvgkkliglvtsreeiedllklddvidlviprGsnklvsdikkstkipvlGhadGichvyvdksakldkakrlvrdakldypaacnaletllvhkdllrngllddlivvlrvegvklyaGprlaallklnis.evkslrreysskaltveivddvydaidhihkyGsahtdvivtedeevaeiflqkvdsaavlhnastrfsdGfrfGlGaevGistsriharGpvGveGllttrwllrGk.dqvvs.....gdkGlvylhkdlp 709
                 + d+kr+v+k Gt+vv+++d++l+l r+a+iveq+  l +   evil++sGav+ Gr++lr + l+ +s+++ ++s             e+ + a a+ Gq  lm +yet+fsq+dv+a+q+lvt+ df++ + r +l+++++e+++  +vp++nendavs+++   +d   i+ dnd+laal+a ++ ad l+ll+dv+Glyd  ps++d+ +i + ++  ++ e +fG ks+ GrGGm akv +a +a++ G+ v ++asGk + ++ k+ v G+ vGtlf e+ +      +++    ++ + a  ar+++rklq ls  er  +l+ +a+a+ +nee il++n +d++aa+++ ++ +l++rl l+ +kl ++a ++ qla+ + d++G+vl rt++a++l+l + svpiGvllivfesrpd+l+qiasla+ sGnGlllkGGkea++sn  lhkv+ +a++     kv ++++glvtsr ++ dllkld +idlviprGs+ lv++ikk t+ipvlGhadGich y+d++a+ dka  +  d k++ypaacna et+l+h+   ++g    ++  lr  gv l +Gp+  a+  +++s ++ksl  ey+++ + ve+v ++ +ai hih++Gs+ht++ivted  +ae f+qk d+a+++hnastrf+dGfrfGlGaevGist riharGpvGveGlltt+w+lr   ++ v      gd+   y+h+ l 
  MMETSP1174-20130828|8022_1  19 IVDAKRVVIKAGTSVVSNEDGTLSLVRVAAIVEQVYALLKLQKEVILISSGAVGCGRRKLRKQSLLGTSLRKQMHSCsslddladedeSEFYSAASASSGQLELMKVYETMFSQFDVAASQFLVTEYDFNNSSRRSHLKNSMEEIIKHCMVPIINENDAVSANQGYTDD--NIFSDNDALAALVAQQMGADALVLLTDVDGLYDRAPSEPDASVIPVVYRSVEN-EFSFGAKSNQGRGGMSAKVGSAFNALQQGIGVvVVASGKDTSVLRKLfVTGEPVGTLFLEQPPSmdgpdGVSSLTPTSAQQAASARDAGRKLQGLSFSERSGVLKAVAQAIRDNEESILLANSRDMSAAKQNNIAPALLQRLKLSHEKLVTVARGIDQLADlAADPLGKVLGRTEVAEGLQLTQLSVPIGVLLIVFESRPDSLPQIASLALLSGNGLLLKGGKEAEHSNYTLHKVVVDAVAAasdgKVPREIVGLVTSRTQVSDLLKLDRLIDLVIPRGSKALVTNIKKNTRIPVLGHADGICHTYIDQHADDDKAAAIAVDGKINYPAACNATETILIHQAKVDSGGCATVMRELRKAGVSLKGGPNAIAQGLIDMScAAKSLSVEYGDLTCLVEVVANMEEAIAHIHEHGSSHTECIVTEDTATAEDFIQKTDAACIFHNASTRFADGFRFGLGAEVGISTGRIHARGPVGVEGLLTTKWVLRSTvGDTVAgfsgtGDDTRTYTHRSLA 751
                 5699***********************************************************************9999999999999999999*******************************************************************98765555..59*********************************************999887.******************************862679*******9996589********88654411111666667788899********************************************************************************999**************************************************************************99762233677899********************************************************************************************************************8888777775378********************************************************************************************************75455555465667777899999886 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.6   2.1  5.1e-131  3.5e-128       1     398 []     325     721 ..     325     721 .. 0.96

  Alignments for each domain:
  == domain 1    score: 425.6 bits;  conditional E-value: 5.1e-131
   TIGR00407   1 akeaalklaqlstaeknealskiadeLkaeaelilaanakdiaaakenGladalldrLlLteeklksiaddvkdvieL.adPvGkvieareldeGLklervrvPlGvlgviyearPevivdvasLclktGnaviLkGgkeavrsnkalveviqdaleq...tglpveavqliedpdreevkellkldeyvdlliPrGgnelvklikeestiPvlehadGvChiyldesadlakakkvivdaktqrPstCnaietLLvnkaiaeef.leeLekqleekgvelra..dalvlkllelekateaevskedfdkeflsldLsvkivedleeaiehirqygtkhsdailtedkknaekfvkevdsaavyvnastrfadGfrfGfGaevgistqklharGPvGLeaLvsyk 398
                 a++a+ kl+ ls  e++ +l+++a++++ + e il an +d+ aak+n +a+all+rL+L++ekl ++a ++ ++++L adP+Gkv+  +e+ eGL+l +++vP+Gvl++++e+rP+ + ++asL+l +Gn  +LkGgkea +sn +l +v+ da++      +p e v l++   r +v++llkld+ +dl+iPrG+++lv+ ik++++iPvl+hadG+Ch+y+d++ad  ka  + vd k ++P++Cna et+L+++a  ++    +++++l ++gv+l++  +a ++ l++++ a       + +  e+++l   v +v ++eeai+hi+++g+ h+++i+ted+++ae f+++ d+a +++nastrfadGfrfG+Gaevgist ++harGPvG+e+L ++k
  MMETSP1174-20130828|8022_1 325 ARDAGRKLQGLSFSERSGVLKAVAQAIRDNEESILLANSRDMSAAKQNNIAPALLQRLKLSHEKLVTVARGIDQLADLaADPLGKVLGRTEVAEGLQLTQLSVPIGVLLIVFESRPDSLPQIASLALLSGNGLLLKGGKEAEHSNYTLHKVVVDAVAAasdGKVPREIVGLVTS--RTQVSDLLKLDRLIDLVIPRGSKALVTNIKKNTRIPVLGHADGICHTYIDQHADDDKAAAIAVDGKINYPAACNATETILIHQAKVDSGgCATVMRELRKAGVSLKGgpNAIAQGLIDMSCAA------KSLSVEYGDLTCLVEVVANMEEAIAHIHEHGSSHTECIVTEDTATAEDFIQKTDAACIFHNASTRFADGFRFGLGAEVGISTGRIHARGPVGVEGLLTTK 721
                 89****************************************************************************55****************************************************************************9855567*********99..**********************************************************************************98877651678999***********7777788888887433......35788*******************************************************************************************9987 PP

>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.9   5.8e-13     4e-10       1      62 [.      23      84 ..      23      98 .. 0.90
   2 !  148.6   0.0   8.1e-47   5.5e-44      70     254 ..     113     301 ..     100     308 .. 0.90

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.8e-13
   TIGR01027  1 kriVvKlGsssLteesgklkrsklaelveqvaklkkaGhevvivsSGavaaGleaLglperp 62
                kr+V+K G+s++++e+g+l++ ++a++veqv +l k  +ev+++sSGav  G ++L  ++  
  MMETSP1174-20130828|8022_1 23 KRVVIKAGTSVVSNEDGTLSLVRVAAIVEQVYALLKLQKEVILISSGAVGCGRRKLRKQSLL 84
                69*****************************************************9877655 PP

  == domain 2    score: 148.6 bits;  conditional E-value: 8.1e-47
   TIGR01027  70 alaaVGQgrLmklyeklfsqyglkvaQiLLtradlskrerylNarntleellelgvvpivNENDtva.....veeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsragveviiasgekp.ekiad.lledaavgtlfeak 254
                 a a+ GQ +Lmk ye++fsq++   +Q L t  d+++ +r    +n++ee+++  +vpi+NEND+v+     +++  f DND L+alva+ ++Ad+LvlltdvdgLyd+ p ++pdA +i++v +  e+  ++ ++s  + G GGm++K+ +a  A + g+ v+++++ k  + + + ++ +++vgtlf ++
  MMETSP1174-20130828|8022_1 113 ASASSGQLELMKVYETMFSQFDVAASQFLVTEYDFNNSSRRSHLKNSMEEIIKHCMVPIINENDAVSanqgyTDDNIFSDNDALAALVAQQMGADALVLLTDVDGLYDRAP-SEPDASVIPVVYRSVENEFSFGAKS--NQGRGGMSAKVGSAFNALQQGIGVVVVASGKDtSVLRKlFVTGEPVGTLFLEQ 301
                 7899**************************************************************933333455679*********************************.*************999999988776..67********************99887666661555553579********987 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.4e-13   9.6e-11     125     230 ..     157     274 ..     135     275 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.4e-13
   TIGR00761 125 kelleallkagiipvia...slaldeegqllNv..naDtaAaelAaaleAekLvlLtdvaGileg.....dkksliselel...eeieqlikqavikgGmipKveaalealesgvkkvv 230
                 k+ +e+++k+ ++p+i+   ++++++  +  N+  + D +Aa +A++++A++LvlLtdv+G++++     d +s+i  +     +e     k++  +gGm  Kv +a +al++g+  vv
  MMETSP1174-20130828|8022_1 157 KNSMEEIIKHCMVPIINendAVSANQGYTDDNIfsDNDALAALVAQQMGADALVLLTDVDGLYDRapsepD-ASVIPVVYRsveNEFSFGAKSNQGRGGMSAKVGSAFNALQQGIGVVV 274
                 6779999*********83333455544444466558899**************************887432.33555554311233333455666799****************98876 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.4   1.6e+03       1      30 [.      25      53 ..      25      70 .. 0.50
   2 !   24.2   0.0   7.1e-09   4.8e-06     119     219 ..     194     296 ..     190     298 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.4
   TIGR02076  1 ivislgGsvlseeeidaekikefakilkkl 30
                +vi+ g sv+s+e+     + ++a i++++
  MMETSP1174-20130828|8022_1 25 VVIKAGTSVVSNEDGTL-SLVRVAAIVEQV 53
                58888999998886333.333334444333 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 7.1e-09
   TIGR02076 119 davaallaEaleadllinitnvdgvYdkDPkkykdakkfkklkaeelveive...ksslkaGssevvDllaakiierskikvivvngedpenlvk.vkkgeavgt 219
                 da aal+a ++ ad+l+ +t+vdg+Yd+ P++ +da  ++ +  +   e++    +++ ++G s+ v   a + +++    v+v +g+d++ l k +++ge vgt
  MMETSP1174-20130828|8022_1 194 DALAALVAQQMGADALVLLTDVDGLYDRAPSE-PDASVIPVVYRSVENEFSFgakSNQGRGGMSAKVGS-AFNALQQGIGVVVVASGKDTSVLRKlFVTGEPVGT 296
                 99****************************99.999988876554444444411033333344443332.33333333333445566666666665577776666 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.86   5.9e+02     201     221 ..      43      63 ..      18      81 .. 0.49
   2 !   18.6   0.0   2.5e-07   0.00017     206     281 ..     189     267 ..     166     285 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.86
   TIGR00746 201 lkGveaviDkDlasekLaeev 221
                 l  v+a++++ +a  kL +ev
  MMETSP1174-20130828|8022_1  43 LVRVAAIVEQVYALLKLQKEV 63 
                 444444444444444443333 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.5e-07
   TIGR00746 206 aviDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleev...kveeleelakdgefaaGsmgPkveaaiefve 281
                    D D  ++++a++++aD+lv+ltdvd  y     + + ++  v   +ve+  ++ ++ + + G m+ kv +a +  +
  MMETSP1174-20130828|8022_1 189 IFSDNDALAALVAQQMGADALVLLTDVDGLYDRAPSEPDASVIPVvyrSVENEFSFGAKSNQGRGGMSAKVGSAFNALQ 267
                 34589999***********************887655555554441223445556778888999999999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2363.23
//
Query:       MMETSP1174-20130828|8021_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   60.8   0.3    6.4e-17   58.4   0.2    1.8  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.7e-14   48.9   0.1    1.7e-11   40.9   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    8.5e-11   39.1   0.0    5.2e-10   36.5   0.0    1.9  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.4e-10   38.4   0.6    2.9e-07   27.4   0.1    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    4.3e-10   36.5   0.0    1.8e-08   31.1   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.1e-06   24.1   0.0    3.3e-06   23.4   0.0    1.2  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
    1.7e-05   21.4   0.0    0.00075   16.0   0.0    2.1  2  TIGR00595 priA: primosomal protein N'
    0.00041   17.3   0.0     0.0019   15.1   0.0    1.8  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00042   16.5   8.5     0.0048   13.0   0.0    2.6  3  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0034   13.7   0.1     0.0056   13.0   0.1    1.3  1  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
  ------ inclusion threshold ------
      0.011   12.6   0.0      0.035   11.0   0.0    1.7  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.2   1.7e-19   6.4e-17      13     327 ..     288     585 ..     283     590 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 1.7e-19
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDts.sserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsAT.vgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqv 327
                 +p++ Q ev +++++g + l++a+TG+GKTla  lp +++l+    + + ++vl ++P + La++i+r   +  +   l++rv +  G ++ +++ +r +k++p++++ Tp  +a l   + ++  ++++ra+v+DE  ++l+s          a  +++ ++ +++  sA  + + +++++++l+  +     ++ ++ +k  ++++  +  +  +       l+++ +++ ++++  + +vF+   ++ +l+  +Lle     a++    Hg + k+ R +v + l +g+l++vv+T     G+D   +  v+++
  MMETSP1174-20130828|8021_1 288 QPTRIQAEVASEYTTGGNLLITAATGSGKTLAYLLPLVANLE----EAERVQVLVLAPGRELAAQISRVCAELTDG--LPFRVLTLIGGANlNRQLERIKKTKPQVIVGTPGRIAELALLS-NKLKLSGVRAIVLDEADAMLESDAI---TSVRAITKAVPKDCQRIVASASgLSKQADLEDLVLRPLT-----ILGGSATKGSAISMPANVGHGVVVDDQRKHLSLVRSMVFTMSDDDSGIVFVRDSKRVDLVVAKLLENGII-AGP---LHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNL 585
                 78899********************************99999....56779******************9999986..6888888877776155668999*************99765544.455689***************9654...444466777888888888777536777777777776655.....333333332322222222223333344556788999999*********************9999975444.555...5***************************999889888777777765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   4.5e-14   1.7e-11      35     138 ..     287     393 ..     274     422 .. 0.77
   2 !    5.6   0.0    0.0023      0.85     271     357 ..     499     588 ..     458     610 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 4.5e-14
   TIGR03817  35 eapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkelee.rdvraatydGdtpaee..rewirekaryvltnPd 138
                 ++p + qa++a   ++G +  ++++t sGk+layllP+++ l+e+ r ++l laP + laa   r++ el++   +r+ t+ G ++ ++   +  + k ++++  P 
  MMETSP1174-20130828|8021_1 287 DQPTRIQAEVASEYTTGGNLLITAATGSGKTLAYLLPLVANLEEAERVQVLVLAPGRELAAQISRVCAELTDgLPFRVLTLIGGANLNRqlERIKKTKPQVIVGTPG 393
                 578899****************************************************************9865677777766655432003333445556665665 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0023
   TIGR03817 271 gvrtltfvrsrrgaevvaleakerlaevdaelaer..vaayraGyla.edrreleralkdGellgvaatnalelGvdisGldavviaGfP 357
                  vr+++f  s   + +v ++  +r++ v a+l e   +a    G ++ +dr e+ ++l dG+l  v++t+    G+d   l  vv    P
  MMETSP1174-20130828|8021_1 499 LVRSMVFTMSDDDSGIVFVRDSKRVDLVVAKLLENgiIAGPLHGDMPkNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNLDLP 588
                 58999999999999999999999999999888665336777777776268999******************9999999888888766555 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.4e-12   5.2e-10      15     305 ..     292     589 ..     286     591 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.4e-12
   TIGR00614  15 vqlevinavlegrdalvvmatGgGksLCyqlpavvs....dglt.lvisPLisLmeDqvlqL...kasdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvp..viaLtat.asssvreD.ilklLklkkpqvtits.fdRp.nlkyeveekks.kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk 305
                  q ev     +g + l+  atG Gk L y lp v      + +  lv++P + L   q+ ++    + +++  +L+     +  ++ l+ +k++k +++  tP ++++   l +kl + +++  i++Dea  + +      ++ +++  + +++P+    ++a ++  ++++  eD +l+ L++     t  s    p n+   v    + k l+ ++ ++ +  + +sGi++    k+v+ v a+L ++g+ a+  h ++ +++r+ev k+     +++vv t     G++ p + +v+  +lp 
  MMETSP1174-20130828|8021_1 292 IQAEVASEYTTGGNLLITAATGSGKTLAYLLPLVANleeaERVQvLVLAPGRELAA-QISRVcaeLTDGLPFRVLTLIGGAN-LNRQLERIKKTKPQVIVGTPGRIAELALLSNKL-KLSGVRAIVLDEADAMLES-----DAITSVRAITKAVPKDCqrIVASASGlSKQADLEDlVLRPLTILGGSATKGSaISMPaNVGHGVVVDDQrKHLSLVRSMVFTMSDDDSGIVFVRDSKRVDLVVAKLLENGIIAGPLHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNLDLPT 589
                 688888888889999*****************987422224554278999999865.5555411135689999999888888.55567889***************9996666777.999***********99873.....4566666677777864311443333202222334424566666655544433133323666655444433667777777779999**********************************************************999*************999996 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   7.7e-10   2.9e-07     259     365 ..     306     417 ..     290     420 .. 0.86
   2 !    9.1   0.0   0.00027       0.1     485     531 ..     537     583 ..     504     587 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 7.7e-10
   TIGR00643 259 RLlqGdVGsGKTvVavlallaviesGy..qvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGTh......allqekvefkeLalviiDE 365
                  L+    GsGKT+  +l l+a +e+    qv+++aP   LA+Q  + ++el + l ++v  L g  +    +++le+i++ + +++vGT       all++k +++ ++ ++ DE
  MMETSP1174-20130828|8021_1 306 LLITAATGSGKTLAYLLPLVANLEEAErvQVLVLAPGRELAAQISRVCAELTDGLPFRVLTLIGGANL---NRQLERIKKTKPQVIVGTPgriaelALLSNKLKLSGVRAIVLDE 417
                 5788889*********99999998764338999******************************98765...567899************544445599****************9 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00027
   TIGR00643 485 vallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv 531
                  + lhg ++++++ ev+++ ++++++++v+T +   G+d P +t +v
  MMETSP1174-20130828|8021_1 537 AGPLHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVV 583
                 5669*************************************988776 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.019         7      16      49 ..     291     324 ..     283     342 .. 0.90
   2 !   31.1   0.0   4.8e-11   1.8e-08     207     303 ..     491     589 ..     456     591 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.019
   TIGR01389  16 ggqeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                 + q+e+ +e  +g ++l    tG Gk l Y +P 
  MMETSP1174-20130828|8021_1 291 RIQAEVASEYTTGGNLLITAATGSGKTLAYLLPL 324
                 569999************************9994 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 4.8e-11
   TIGR01389 207 kkenkkkqlleyl..kkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk 303
                  +++k+  l++ +  ++ +++sGi++    k+v+ + ++L ++gi a++ h+ + k+ Rae  ++    + ++vv t     G+d +   +v+ ldlP 
  MMETSP1174-20130828|8021_1 491 DDQRKHLSLVRSMvfTMSDDDSGIVFVRDSKRVDLVVAKLLENGIIAGPLHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNLDLPT 589
                 44444445555441156667******************************************************************************7 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.9e-09   3.3e-06     252     308 ..     291     349 ..     270     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.9e-09
   TIGR01407 252 klaelvedelteeekslIeAatGtGKtlgYLLpalylak..eekpvviStatkvLQsQl 308
                 ++  +v  e+t   ++lI AatG+GKtl+YLLp+++  +  e+ +v++  + + L  Q+
  MMETSP1174-20130828|8021_1 291 RIQAEVASEYTTGGNLLITAATGSGKTLAYLLPLVANLEeaERVQVLVLAPGRELAAQI 349
                 66778999999999*******************98765534555777766666666665 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06   0.00075       2      84 ..     308     392 ..     307     448 .. 0.80
   2 ?    3.3   0.0     0.014       5.4     301     340 ..     546     585 ..     521     590 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2e-06
   TIGR00595   2 leGvtGSGKtEvylkviekvlak..gksvlvLvPEiaLtaqllkrlkerfgsevavlhsklsasekkqawrkvklgeakvviGar 84 
                 ++  tGSGKt  yl  + + l++    +vlvL P   L+aq+ +  +e  +  +  +   ++ ++ +++++++k+ + +v++G+ 
  MMETSP1174-20130828|8021_1 308 ITAATGSGKTLAYLLPLVANLEEaeRVQVLVLAPGRELAAQISRVCAELTDGLPFRVLTLIGGANLNRQLERIKKTKPQVIVGTP 392
                 5678*********9766665544114599************9888877776666666777999999*****************84 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.014
   TIGR00595 301 kkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvl 340
                 k++ +++++++ +g   +++ t m a+Gld p +t v+ l
  MMETSP1174-20130828|8021_1 546 KNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNL 585
                 4556889999**********************99987654 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     5e-06    0.0019      24      76 ..     303     355 ..     290     421 .. 0.85
   2 ?   -0.6   0.0      0.29   1.1e+02     316     360 ..     537     581 ..     496     586 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5e-06
   TIGR04095  24 ngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaek 76 
                 +g  +++ atG+Gktl  L   ++  e+++++ v+v++P ++L+ q ++ +++
  MMETSP1174-20130828|8021_1 303 GGNLLITAATGSGKTLAYLLPLVANLEEAERVQVLVLAPGRELAAQISRVCAE 355
                 55567788*********99988888888999***************9887665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.29
   TIGR04095 316 vktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairt 360
                 + +     +k++R+e++k++ +g+l  +v+      G+D P + +
  MMETSP1174-20130828|8021_1 537 AGPLHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTH 581
                 555566678999******************999999999997765 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.4       1.9     7e+02     590     627 ..     158     193 ..     145     220 .. 0.44
   2 !   13.0   0.0   1.3e-05    0.0048      11      72 ..     285     351 ..     279     361 .. 0.81
   3 !    8.7   0.1   0.00024     0.091     458     524 ..     525     591 ..     488     596 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.9
   TIGR00631 590 ikeilekkekekekeakkkkkkaaeeaeklsekelkkl 627
                 +k+  +kk+ke+++++ ++ k  +++++k ++ + +++
  MMETSP1174-20130828|8021_1 158 VKKEKTKKNKEAKAAKGVEAK--KNREAKATKGDEARV 193
                 222222222222222222211..123333333344444 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.3e-05
   TIGR00631  11 aGDqpkaieklvesleagekeqvLlGvtGsGktft.....ianviakvqkPtlvlahnktLaaqLye 72 
                  GDqp+ i++ v s  +   +  +  +tGsGkt++     +an+ +      lvla+ + Laaq+ +
  MMETSP1174-20130828|8021_1 285 EGDQPTRIQAEVASEYTTGGNLLITAATGSGKTLAyllplVANLEEAERVQVLVLAPGRELAAQISR 351
                 6*******987777777677888999*******9754444688888888899************976 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00024
   TIGR00631 458 dltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeG 524
                  +   l e gi +  lh ++   +r+e+++ L +g++ ++v   +   GlD P  + v  lD   +G
  MMETSP1174-20130828|8021_1 525 LVVAKLLENGIIAGPLHGDMPKNDRAEVVKRLYDGRLHLVVTTEMAARGLDAPLLTHVVNLDLPTDG 591
                 455667899999******************************************9999999976665 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.5e-05    0.0056      19      74 ..     306     360 ..     292     383 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
   TIGR03117  19 alveaatGvGktlamllaaeallkerpdakvaiavPtlalldqlleeyerlqaeal 74 
                 +l+ aatG Gktla+ll   a l e +  +v + +P   l  q+ +    l+ ++l
  MMETSP1174-20130828|8021_1 306 LLITAATGSGKTLAYLLPLVANLEEAERVQVLVLAPGRELAAQISRVCAELT-DGL 360
                 6899*********************************999999988888887.444 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.88   3.3e+02     152     229 ..     199     268 ..     198     281 .. 0.66
   2 ?   11.0   0.0   9.3e-05     0.035      16      64 ..     305     358 ..     293     363 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.88
   TIGR03158 152 DEFHlydakqlasllflldemqlirteecrrklvfLsAtPdeelierlkeakfvgaeiapidgekyretdnpeleade 229
                 DE   ++a+++ sll  ld    +++ e++r  vf sA  +ee  +r          i  +++    ++d p+++a +
  MMETSP1174-20130828|8021_1 199 DEQNNAEANEVYSLL-SLDS-VAAQALENSREGVFFSALNEEEEGGRTSTF------IELLKECTSGNPDSPAMSAFD 268
                 555666777777777.6666.678888899999999998888766665444......445555555556666666655 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.3e-05
   TIGR03158  16 vllntAptGaGKtlaalvevlseeldt.....ialyPtNaLiedqekaikelvd 64 
                  ll+tA tG+GKtla l++++ +  ++     + l P  +L+ +  +   el d
  MMETSP1174-20130828|8021_1 305 NLLITAATGSGKTLAYLLPLVANLEEAervqvLVLAPGRELAAQISRVCAELTD 358
                 6899***************99876666677776777999999988877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.71u 0.17s 00:00:00.88 Elapsed: 00:00:00.63
# Mc/sec: 1334.56
//
Query:       MMETSP1174-20130828|8023_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 859.93
//
Query:       MMETSP1174-20130828|8024_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 734.74
//
Query:       MMETSP1174-20130828|8026_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:01.01
# Mc/sec: 286.19
//
Query:       MMETSP1174-20130828|8030_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.8   0.7      0.028   10.3   0.0    1.5  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.8e-06     0.028     126     160 ..       6      39 ..       1      50 [. 0.80
   2 ?   -2.0   0.2     0.036   1.5e+02     665     712 ..     123     172 ..     110     209 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.8e-06
   TIGR00870 126 seftkgitalilAihkqnyeivklLlekgasvear 160
                  +  +g t+l +A h++n+ +v+ L + g+ v+a+
  MMETSP1174-20130828|8030_1   6 ARTDNGNTPLKIASHNNNLDVVRYL-AGGVHVHAT 39 
                 567789*****************97.567776654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.036
   TIGR00870 665 kliekklgkkrerrarrveevnwktierkaetlsekpg...trsqkvmkrl 712
                 +l+ + + +++ rrar+  +++ ++ +++++++++      ++s+++++  
  MMETSP1174-20130828|8030_1 123 ELVGNLHRNHC-RRARKLGKNKNTELQDQVDRIERALChqeLVSTEELRAA 172
                 44444444444.666666666666667777776665433343333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 915.41
//
Query:       MMETSP1174-20130828|8031_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-06   23.7   0.1    3.7e-06   23.6   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
     0.0019   13.6   0.2     0.0021   13.5   0.1    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.8e-09   3.7e-06     307     390 ..      78     160 ..      26     162 .] 0.70

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.8e-09
   TIGR00955 307 reveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvq 390
                 + +  + n+ +++e++++++ ++ + + + +++  q+++llkR ++   r+  l+k  ++ ++v++ l+ +iy ++e +q+gv 
  MMETSP1174-20130828|8031_1  78 TLTASHHNQPHHHEQHYEQQ-QQYHGTVFDSTMAQQLRALLKREFTVRKRSRILTKAVVGRTVVISGLLCSIYPQVEKDQQGVF 160
                 22222333333334444444.3456666******************************************************97 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1     1e-06    0.0021     330     452 ..      33     161 ..      19     162 .] 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1e-06
   TIGR00956 330 ikkgyekkvprtakefeky...wrnspeyaelekeideylerveeekekeaikesavakkskrtrkkskytv...sfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyv 452
                 +++  e  v rt +e   +    r+ ++   + +e  e  e  +++ +  + ++ + +++  + +++ + tv   ++ qq++ +l+Re++  k++ ++t   v  +++ + +l s++ ++ek+++ +++
  MMETSP1174-20130828|8031_1  33 LNPAREAAVKRTNEETMMReatTREMDVCGSMDEEAGEEEEGGSDTLTASHHNQPHHHEQHYEQQQQYHGTVfdsTMAQQLRALLKREFTVRKRSRILTKAVVGRTVVISGLLCSIYPQVEKDQQGVFS 161
                 4555566688888775433001444555556666666666655555555556666655555444443333443337899************************9******************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 647.95
//
Query:       MMETSP1174-20130828|8027_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-141  468.1   1.1    6.7e-71  237.0   0.2    2.1  2  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.0   0.2   1.6e-74   6.7e-71       1     188 [.      12     213 ..      12     222 .. 0.93
   2 !  229.9   0.0   2.3e-72   9.5e-69     191     367 ..     235     433 ..     227     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 237.0 bits;  conditional E-value: 1.6e-74
   TIGR01034   1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyte........aelGfdaktiavleaieeqspdiaqgvekeke.eelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednk.....pvkvdtvvlstqhde 188
                 lf sesv eGhPdki+d +sd vLda+l  d++skvace+++k+++v+++Geitt+a +d++ ++r+++k+iGy++        +++G+d++t+ v   i++qspdia gv+  k+  ++gaGdqgimfGyat+et +++Pl+ l+a +l k l+e+rk+g l +Lrpd+k+qvt+ey ++      p+k++tvv+stqh+e
  MMETSP1174-20130828|8027_1  12 LFSSESVNEGHPDKICDMVSDGVLDACLAADPYSKVACETATKDNMVMVFGEITTKADLDYDAIVRNTVKNIGYDSfvddltstTSKGLDYQTMEVQVRINKQSPDIAGGVHVGKSeMDVGAGDQGIMFGYATDETADCMPLTHLMATRLGKVLTEVRKSGLLWWLRPDGKTQVTIEYVQKLdgsvePIKIHTVVISTQHAE 213
                 699***********************************************************************8533333333689*************************8776489***********************************************************988667788*************86 PP

  == domain 2    score: 229.9 bits;  conditional E-value: 2.3e-72
   TIGR01034 191 slkelreaiieeiikpvlpke...........lldektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevqlsyaigvaePvsisvetfgtekk..seeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgre.........efpWekl 367
                 s++e++e ii+e++ ++l++            +  ++ +++inP+G+f+iGGP+gd+GltGrkii+dtyGg+++hGGgafsGkdp+kvdrsaay+ r +ak++v+agl++r++vqlsyaigva+P+s+ vet+gtek+  s+e +++vvk +fd rp +i   L L++p y++taay hfgre          f+Wek+
  MMETSP1174-20130828|8027_1 235 SMAEMNELIIQEVVIKTLESItlkngtpatsiFSRDECHMHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRRMAKSIVKAGLSKRALVQLSYAIGVAKPLSLFVETYGTEKAgiSAEDITNVVKLNFDCRPGGIALALTLREPKYQQTAAYCHFGREaetqeggllAFEWEKV 433
                 6777778888777777765320111111222256688999************************************************************************************************9644899***************************************95555444444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1655.21
//
Query:       MMETSP1174-20130828|8033_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 944.23
//
Query:       MMETSP1174-20130828|8034_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   28.2   1.0    1.5e-07   28.2   0.7    4.0  5  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.013   13.0   0.1      0.035   11.7   0.1    1.7  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.3    0.0055        11     126     155 ..      84     113 ..      28     129 .. 0.71
   2 !   28.2   0.7   7.4e-11   1.5e-07     165     250 ..     143     227 ..     138     249 .. 0.85
   3 ?   -0.9   0.7      0.05     1e+02      50      89 ..     237     277 ..     228     285 .. 0.65
   4 ?   -5.7  10.0       1.4   2.9e+03      67     127 ..     291     349 ..     281     356 .. 0.62
   5 ?   -3.3   0.6      0.27   5.5e+02      43     127 ..     500     587 ..     486     598 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0055
   TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskall 155
                  a   kekGn  +++++ ++a++ y+  + 
  MMETSP1174-20130828|8034_1  84 DAGVSKEKGNGHFGRQENKEAVDAYNAGIK 113
                 345679********************9886 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 7.4e-11
   TIGR00990 165 nraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakei 250
                 n+a     l +++  v+ t a ++ dp  vkal rra+a ++lg +++a  dlt +  id  ++  ++  +++l k+  e k k++
  MMETSP1174-20130828|8034_1 143 NLAMASIKLHQWNAAVKATNAVIQKDPSNVKALFRRAAARQGLGSFQEAKADLTRLVAIDP-ENRPAKVELQKLKKRLVEHKKKNK 227
                 778888899*********************************************9998875.455555567777777778777776 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.05
   TIGR00990  50 agvvyylrkg.qeqkeskpklskkerrkrkdaekeaekkae 89 
                 ag vy  +++ +++ke ++  +k e+r r d e +  k a 
  MMETSP1174-20130828|8034_1 237 AGGVYDDKEQlRKEKEAREAKAKAEKRARFDKECARRKDAG 277
                 56666554442667777788888888888777766666444 PP

  == domain 4    score: -5.7 bits;  conditional E-value: 1.4
   TIGR00990  67 pklskkerrkrkdaekeaekkaeekkstapkaaavesadelpeidessvvnlseeerkkya 127
                 +k +kk ++++ +a+ +a++  e ++ +++ +++     +  e d +++  l e ++  y 
  MMETSP1174-20130828|8034_1 291 EKAAKKKKKEKEEAKDKADR--ERRAKQKAANPPARKRASSEELDAEDKKILDETKKSGYC 349
                 22233333333333333333..334445566788888888899999999999998888875 PP

  == domain 5    score: -3.3 bits;  conditional E-value: 0.27
   TIGR00990  43 vavvvigagvvyylrkgqeqkeskpklskkerrkrkdaekeaek...kaeekkstapkaaavesadelpeid..essvvnlseeerkkya 127
                 vavv  +  ++y l  + e   s+++    +  +  d  k+ ++   + e k + ++k a + s    +ei+  ++ +v++s +++k+  
  MMETSP1174-20130828|8034_1 500 VAVVRGTKRYMYDLSLELEYEVSVDESF--DMTDEYDISKDKTSvtpARETKYTGTAKFAEISSLTGASEIEvsFKPKVGVSSKHQKRVK 587
                 5555555555555555444433333221..122223333333331124455566677777787776666665115566777776666554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.7e-05     0.035      56     122 ..     142     207 ..     133     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.7e-05
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                 l La++  +l++++ A++a  +  + d+++ ++++++a     lg  +eA+++L + ++i+ e++  
  MMETSP1174-20130828|8034_1 142 LNLAMASIKLHQWNAAVKATNAVIQKDPSNVKALFRRAAARQGLGSFQEAKADLTRLVAIDPENR-P 207
                 789*********************************************************99876.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.64
# Mc/sec: 1264.21
//
Query:       MMETSP1174-20130828|8036_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1485.82
//
Query:       MMETSP1174-20130828|8032_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-29  100.5   0.7    2.1e-29  100.5   0.5    1.6  2  TIGR01077 L13_A_E: ribosomal protein L13
  ------ inclusion threshold ------
      0.019   12.6   0.1      0.052   11.2   0.0    1.7  2  TIGR01066 rplM_bact: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.5     1e-32   2.1e-29      47     140 ..       2      97 ..       1      98 [. 0.96
   2 ?   -1.7   0.0      0.36   7.3e+02     117     127 ..     122     133 ..     101     144 .. 0.48

  Alignments for each domain:
  == domain 1    score: 100.5 bits;  conditional E-value: 1e-32
   TIGR01077  47 kYkeklekkkktnprrgPffprapdrilkrtvrgmlpkkkarGrealerlkvyvGiPkeldkkklvkveeal.vsrlskt.kyvtlgelakelGak 140
                 k+  +l+k+++tnp+rgPf++r p r+++rtvrgmlp+k++rG++al rlk y+G+P++ dk k+++v++al v ++++  k + lg+l+ e G+k
  MMETSP1174-20130828|8032_1   2 KWARFLRKRHNTNPKRGPFHFRSPARMFWRTVRGMLPHKSHRGQQALMRLKSYEGVPSPTDKMKRMVVPDALkVLHVKPYrKITLLGRLSSESGWK 97 
                 567899*****************************************************************999*****999999**********9 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.36
   TIGR01077 117 al.vsrlsktky 127
                 a+ v + + +k 
  MMETSP1174-20130828|8032_1 122 AKaVIKAKAEKA 133
                 222334444444 PP

>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05     0.052      94     132 ..      23      62 ..      12      70 .. 0.82
   2 ?   -2.3   0.0      0.38   7.7e+02      12      32 ..     121     144 ..     108     146 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
   TIGR01066  94 kkpekvlekAvkgmlpkn.klgrkllkklkvykgsehphe 132
                 ++p+++    v+gmlp+  + g++ l +lk y+g   p+ 
  MMETSP1174-20130828|8032_1  23 RSPARMFWRTVRGMLPHKsHRGQQALMRLKSYEGVPSPTD 62 
                 7899999*********7615689999*******9877765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.38
   TIGR01066  12 rkwyvvdaa...gktLGrlaseva 32 
                 ++  v+ a+      LG l s++a
  MMETSP1174-20130828|8032_1 121 KAKAVIKAKaekAADLGDLNSKLA 144
                 344455554322334666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1174-20130828|8039_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 694.88
//
Query:       MMETSP1174-20130828|8037_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   10.2   0.0      0.094    9.7   0.0    1.1  1  TIGR00885 fucP: L-fucose:H+ symporter permease


Domain annotation for each model (and alignments):
>> TIGR00885  fucP: L-fucose:H+ symporter permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   2.3e-05     0.094     196     263 ..     525     592 ..     503     599 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.3e-05
   TIGR00885 196 vlavlllirlkklpalnieeakkisfkaalsrlarkakyregviaqffyvGvqimcwtfiiqyavrli 263
                 + +++ lir + +p+ + e+a+ +  + a   + +++kyr   + +++ v     c + ++ +a+   
  MMETSP1174-20130828|8037_1 525 IEIIATLIRCNFFPKFKLENAGDVRSFKAAATILEEKKYRRMSLMKLLIVTHHPRCHSRMMAFATTVR 592
                 6678899***************9987778889999************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2061.06
//
Query:       MMETSP1174-20130828|8035_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1174-20130828|8040_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 694.01
//
Query:       MMETSP1174-20130828|8042_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 893.13
//
Query:       MMETSP1174-20130828|8041_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1065.02
//
Query:       MMETSP1174-20130828|8047_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 873.16
//
Query:       MMETSP1174-20130828|8045_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1324.60
//
Query:       MMETSP1174-20130828|8046_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|8051_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 757.72
//
Query:       MMETSP1174-20130828|8050_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.30
# Mc/sec: 2248.21
//
Query:       MMETSP1174-20130828|8049_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1880.84
//
Query:       MMETSP1174-20130828|8052_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-106  353.7   0.0   2.2e-106  353.5   0.0    1.0  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    2.1e-21   74.4   0.0    2.8e-21   74.0   0.0    1.1  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5   0.0  1.1e-109  2.2e-106       2     337 ..      65     399 ..      64     400 .. 0.98

  Alignments for each domain:
  == domain 1    score: 353.5 bits;  conditional E-value: 1.1e-109
   TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklke.vdvekeleyvleaikllreeleeevpliGFaGaPfTlasYlieGggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkvalQGnldPavllaskealeekvekilealkegksryifNlGHGilpetppenvkalvelvh 337
                 ll++++ge+ +r+PvWlmRQaGRy++++r++ +k++ f++ +++p++a+e++lq +r++g+D++I+FsDIl++l+a+g+e+++++gkgpv+++p r++e v++lk+ +d++++l++v+e++k lr+e e++++liGF+G+PfTla+Y ++G ++k++ ++kk+++++pe l+aLl++l++a+ +Y  +Qv++Ga+++q F+swa +L++++f+ f++py++k ++ lk++ ++vPvi+fa+g +++le  +++ +d + lD +vd++ a++++++k  + Gn+dP+vlla++e ++e+v++ + a++    ++++NlGHG++  tp+ +v+a+v+ ++
  MMETSP1174-20130828|8052_1  65 LLRVARGEDGERTPVWLMRQAGRYMKDFRAYSDKYP-FRQRSETPEMATELSLQCWRAFGMDGVIMFSDILTPLPAMGIEFDMVKGKGPVISNPPRSPEAVAALKPlEDPATSLPFVGETLKNLRSETEGRATLIGFVGSPFTLAAYSVNGMADKSCIETKKMMFHAPELLHALLDHLATAIGDYACYQVEHGAQVIQYFESWAHHLTPAQFDVFAKPYANKAMSILKAKhPDVPVIYFANGGSSYLELQTDMACDNLCLDHHVDISVARTILGSK-PVSGNVDPLVLLAPEERIREEVRSNIMAAGG-PGKHLLNLGHGVIQGTPESAVAAFVDEAK 399
                 799********************************9.*********************************************************************99*************************************************************************************************************************955*****************************************997.9**********************99998875.78***********************9876 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.4e-24   2.8e-21      48     336 ..     107     399 ..      79     402 .. 0.87

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 1.4e-24
   TIGR01463  48 daeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenlllkegripvvleaikilrekygdelpiigslegPitlAsqligve......eflkylstdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikeid.svtvlHiCgktskilsdiaksGveglsvdekvgvaeakkvigdeislvGnldpvsvllnG..taekvkklakevleaGvdivapgCdiasmtpleNlkalveack 336
                  +e+  +l  + ++ +G++ v++  d+ ++  ++g e d+ k k P + + P p+ ++ +  ++ l   +   p v e  k lr   ++   +ig +++P+tlA   +++       e  k +++ p+l++a+l+  a +   ya  +ve Ga+vi+  +  a    l+p  +  f+ py  k +  +k     v v+      s  l+   +  +++l  d+ v++  a+ ++g    + Gn+dp+ +l +     e+v+ +   ++  G  ++  g ++  +tp+  + a+v+ +k
  MMETSP1174-20130828|8052_1 107 TPEMATELSLQCWRAFGMDGVIMFSDILTPLPAMGIEFDMVKGKGPVISN-P-PRSPEAVAALKPLEDPATSLPFVGETLKNLRSETEGRATLIGFVGSPFTLAAYSVNGMadksciETKKMMFHAPELLHALLDHLATAIGDYACYQVEHGAQVIQYFESWAH--HLTPAQFDVFAKPYANKAMSILKAKHpDVPVIYFANGGSSYLELQTDMACDNLCLDHHVDISVARTILG-SKPVSGNVDPLVLLAPEerIREEVRSNIMAAGGPGKHLLNLGHGVIQGTPESAVAAFVDEAK 399
                 5789999**********************************999886666.5.6778888888999788999********************************98887641121223456788899*******************************998885..59999**********9988887643213455666666788999999***********************.67899*********98877889999999999999***********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 1564.46
//
Query:       MMETSP1174-20130828|8055_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1174-20130828|8053_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1770.85
//
Query:       MMETSP1174-20130828|8056_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2335.47
//
Query:       MMETSP1174-20130828|8057_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1174-20130828|8061_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1174-20130828|8060_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-132  438.0   0.1   9.5e-132  437.6   0.0    1.0  1  TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   4.8e-126  418.9   0.1   6.4e-126  418.5   0.1    1.1  1  TIGR01270 Trp_5_monoox: tryptophan 5-monooxygenase
   4.1e-119  396.3   0.0   5.1e-119  396.0   0.0    1.0  1  TIGR01269 Tyr_3_monoox: tyrosine 3-monooxygenase
    3.7e-45  152.0   0.0    5.7e-45  151.3   0.0    1.3  1  TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01268  Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.6   0.0  9.3e-135  9.5e-132      53     403 ..      22     374 ..       8     384 .. 0.92

  Alignments for each domain:
  == domain 1    score: 437.6 bits;  conditional E-value: 9.3e-135
   TIGR01268  53 kskegeyeffveldeksdekledvieslrekaevlvnelsrdkkedkdavpwfprkikeldrfanqilsygaeldadhpgfkdavyrarrkqfadiafnykhgepiprveyteeeietwrtvfkeltk.lykthackeynhvfpllqencgfrednipqledvsdflkdctgfrlrpvagllssrdflaglafrvfhstqyirhkskpkytpepdvchellghvplfadvefaqfsqeiglaslgapdeyieklatlywftvefglckqdgelkaygagllssfgelqycls.........dkpelkdlepektavtkypitefqplyflaesfedakeklkefaatiprpfsvrynaytq 403
                 k  ++++effv+++  +++  e+++  lre++    n l      dk + pwfpr+i++ld +an++l  g++l++dhpgf+d+vyr rrk +a+ a++++  + +p ++y  ee+ tw++v+ +l++   +  ac+ey  ++pl++++cg+  d ipq ed+s fl++ t f+lrpvagllssrdfl  lafrvf +tqyirh+s p ytpepd+chellgh p+fad  fa+fsqeiglaslga de ++kla  yw +vefgl + ++  kaygagllssfgel+y+ +         d p  +d +pe +a +++pit +qplyf+a+s+++akek++ + ++++rpf  ry+   +
  MMETSP1174-20130828|8060_1  22 KXDKNSFEFFVDFE-PDPKINEELMGFLREES-R--NVLVL----DKRSSPWFPRHISDLDAIANRVLYAGTDLESDHPGFQDSVYRSRRKNLAQKAMDHRQENSLPYIDYSAEEKYTWGVVYDKLVSgCLNDFACEEYLRILPLMESQCGYSRDTIPQQEDISAFLRHQTRFQLRPVAGLLSSRDFLNALAFRVFFCTQYIRHHSVPLYTPEPDICHELLGHAPMFADPDFADFSQEIGLASLGASDEDVQKLARCYWHSVEFGLVRSGDGFKAYGAGLLSSFGELEYACApyrpaggehDTPLYRDWDPEDAATQDFPITTYQPLYFVADSLHSAKEKMRGYCESLQRPFFARYDENNE 374
                 567789*******4.44477788999999999.3..33333....34467***************************************************************************987478899***********************************************************************************************************************************************************8754444444448899***************************************************97654 PP

>> TIGR01270  Trp_5_monoox: tryptophan 5-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.5   0.1  6.2e-129  6.4e-126     122     433 ..      56     376 ..      25     384 .. 0.92

  Alignments for each domain:
  == domain 1    score: 418.5 bits;  conditional E-value: 6.2e-129
   TIGR01270 122 sdtatekvewfpkkisdldkvanrvlmyGseldadhpGfkdkeyrkrrkmfadlalnykhGepiprveyteeekktwGtvyrelkr.lykkhavkefldnlellekkcGyrednipqledvskflkaktGfslrpvaGylsardflsGlafrvfyctqyvrhsadpfytpepdtvhellGhvplladpsfaqfsqeiGlaslGaseedikklatlyfftvefGlckqddeqlkvyGaGllssvaelqhals.........gkakikkfdpekvveqeclittfqnayfytesfeeakeklreftktikrpfgvrynpytesv 433
                    ++ +++wfp++isdld +anrvl  G++l++dhpGf+d++yr rrk +a+ a++++  + +p ++y+ eek twG+vy +l     +  a++e+l  l+l+e +cGy+ d ipq ed+s fl+++t f+lrpvaG ls+rdfl  lafrvf+ctqy+rh++ p+ytpepd +hellGh p++adp+fa fsqeiGlaslGas+ed++kla +y+ +vefGl +   + +k+yGaGllss +el++a           +    + +dpe    q+  itt+q  yf+++s+  akek+r ++++++rpf  ry+   e +
  MMETSP1174-20130828|8060_1  56 LVLDKRSSPWFPRHISDLDAIANRVLYAGTDLESDHPGFQDSVYRSRRKNLAQKAMDHRQENSLPYIDYSAEEKYTWGVVYDKLVSgCLNDFACEEYLRILPLMESQCGYSRDTIPQQEDISAFLRHQTRFQLRPVAGLLSSRDFLNALAFRVFFCTQYIRHHSVPLYTPEPDICHELLGHAPMFADPDFADFSQEIGLASLGASDEDVQKLARCYWHSVEFGLVRS-GDGFKAYGAGLLSSFGELEYACApyrpaggehDTPLYRDWDPEDAATQDFPITTYQPLYFVADSLHSAKEKMRGYCESLQRPFFARYDENNEVI 376
                 45567899***************************************************************************976267889**************************************************************************************************************************************9.788*****************9853333332213345688************************************************8766655 PP

>> TIGR01269  Tyr_3_monoox: tyrosine 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.0   0.0    5e-122  5.1e-119      85     429 ..      29     379 ..      10     386 .. 0.91

  Alignments for each domain:
  == domain 1    score: 396.0 bits;  conditional E-value: 5e-122
   TIGR01269  85 evliklevteanlsllieslrrsssisainlladkevkadwfPkkiseldkcqhlltkfePdldtdhPGfadkvyrqrrkaiaeiafrykyGdpiPeveyteeeietwrevfktl.kdlaakracaeyleafqllekecnyseesiPqlqevseflkkrtGfrlrPvaGllsardflaslafrvfqctqyirhassPmhtPePdcihellGhvPlladrsfaqfsqeiGlaslGaseeeieklstlywftvefGlckengevkayGaGllssyGelvhals.........dksekrefepeaaavqpyqdqeyqkiyfvaesfedakeklrryvatisrpfevrfdPitesvevl 429
                 e+++  e +      l+  lr+     + n+l  ++ + +wfP++is+ld     +     dl+ dhPGf+d vyr rrk++a+ a+ ++  + +P ++y+ ee  tw+ v+ +l        ac+eyl  + l+e +c+ys ++iPq +++s fl+++t f+lrPvaGlls+rdfl +lafrvf ctqyirh+s P++tPePd  hellGh P++ad+ fa+fsqeiGlaslGas+e+++kl+  yw +vefGl + +++ kayGaGllss+Gel+ a +         d +  r+++pe+aa q +    yq++yfva+s+++akek+r y ++++rpf +r+d   e + v 
  MMETSP1174-20130828|8060_1  29 EFFVDFEPDPKINEELMGFLRE----ESRNVLVLDKRSSPWFPRHISDLDAIANRVLYAGTDLESDHPGFQDSVYRSRRKNLAQKAMDHRQENSLPYIDYSAEEKYTWGVVYDKLvSGCLNDFACEEYLRILPLMESQCGYSRDTIPQQEDISAFLRHQTRFQLRPVAGLLSSRDFLNALAFRVFFCTQYIRHHSVPLYTPEPDICHELLGHAPMFADPDFADFSQEIGLASLGASDEDVQKLARCYWHSVEFGLVRSGDGFKAYGAGLLSSFGELEYACApyrpaggehDTPLYRDWDPEDAATQDFPITTYQPLYFVADSLHSAKEKMRGYCESLQRPFFARYDENNEVIWVD 379
                 5555555554444556666666....67788888889********************9******************************************************99725688999**********************************************************************************************************************************************************998544454555589999***************************************************999988764 PP

>> TIGR01267  Phe4hydrox_mono: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   5.6e-48   5.7e-45       5     226 ..     118     352 ..     114     373 .. 0.91

  Alignments for each domain:
  == domain 1    score: 151.3 bits;  conditional E-value: 5.6e-48
   TIGR01267   5 aqdldryseeehavwatlidrqlk.llegracdeyldGv....eklgldadripdleevneklraltGwkivavpglipadvffehlanrrfpvttflrtpeeldylqepdvfhdlfGhvpllsnpvfadfleayGkkgvkakalgaallarlywytvefGlvetaaglriyGaGilsskkelvyal........eskeplrvafdllevmrtryridklqkayfvlpslkrlfd 226
                 + +++ ys+ee+ +w  ++d+ +   l++ ac+eyl  +     + g + d ip+ e+++  lr  t +++  v gl+    f++ la r f  t+++r      y  epd+ h+l+Gh p++++p fadf +  G  ++ a+ ++ + lar yw +vefGlv+  +g ++yGaG+lss+ el ya         e + pl   +d++++    + i ++q++yfv +sl+   +
  MMETSP1174-20130828|8060_1 118 SLPYIDYSAEEKYTWGVVYDKLVSgCLNDFACEEYLRILplmeSQCGYSRDTIPQQEDISAFLRHQTRFQLRPVAGLLSSRDFLNALAFRVFFCTQYIRHHSVPLYTPEPDICHELLGHAPMFADPDFADFSQEIGLASLGASDEDVQKLARCYWHSVEFGLVRSGDGFKAYGAGLLSSFGELEYACapyrpaggEHDTPLYRDWDPEDAATQDFPITTYQPLYFVADSLHSAKE 352
                 56899***************98753899********98733333778899***************************************************************************************************************************************9734443333467788999*************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1502.35
//
Query:       MMETSP1174-20130828|8059_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2177.82
//
Query:       MMETSP1174-20130828|8064_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.1   4.1        5.7    5.1   0.1    3.9  4  TIGR01030 rpmH_bact: ribosomal protein L34


Domain annotation for each model (and alignments):
>> TIGR01030  rpmH_bact: ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1    0.0074        30       2      24 ..     126     148 ..     125     149 .. 0.87
   2 ?    0.5   0.0     0.039   1.6e+02       2      15 ..     158     171 ..     157     183 .. 0.77
   3 ?   -1.7   0.0      0.19   7.8e+02       4      14 ..     248     258 ..     246     260 .. 0.85
   4 ?    5.1   0.1    0.0014       5.7       3      14 ..     261     272 ..     259     274 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0074
   TIGR01030   2 kRTyqPsnlkrkrthGFraRMaT 24 
                  RTy P+    + t G r R  T
  MMETSP1174-20130828|8064_1 126 TRTYAPTSDSNSLTGGVRTRAPT 148
                 6********99999999999766 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.039
   TIGR01030   2 kRTyqPsnlkrkrt 15 
                 kRT+ P+ l    +
  MMETSP1174-20130828|8064_1 158 KRTWAPTSLDSDGS 171
                 9*****99876555 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.19
   TIGR01030   4 TyqPsnlkrkr 14 
                 T+ P++ k+ +
  MMETSP1174-20130828|8064_1 248 TFSPTHAKKVK 258
                 9*****99987 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.0014
   TIGR01030   3 RTyqPsnlkrkr 14 
                 RTy P+n  r+r
  MMETSP1174-20130828|8064_1 261 RTYAPTNAERSR 272
                 **********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1225.61
//
Query:       MMETSP1174-20130828|8065_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-35  117.9   0.2    4.3e-32  109.1   0.0    2.5  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    5.1e-24   82.5   1.3      4e-23   79.5   0.0    2.2  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.9e-06   24.6   9.2    4.3e-06   23.4   6.4    1.5  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   3.1e-35   4.3e-32       2     369 ..      10     389 ..       9     396 .. 0.85
   2 !    6.0   0.2    0.0005      0.68     493     575 ..     459     542 ..     446     567 .. 0.78

  Alignments for each domain:
  == domain 1    score: 109.1 bits;  conditional E-value: 3.1e-35
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen...evkveve..dkeytpeeisaeiLqklkkd...aeay..lGekvteav.itvPayfndaqrqatkdaGkiaGl.evlriinePt..aaaLayGld..kekkdekilvfdlGGGtfdvsilelg.dgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvn...PdevvaiGaaiq 369
                 +iG+dLG+ ++ ++v  +    +i n+ G +   ++v+f+   er++Ge+a  q+   p+nti ++  l+G++++  e +  +++ p++ v+ +    e+ v+ +  +++++pe +  ++L kl+++   a  +  l   v   v  +vP +++ + r++ ++a  i Gl +   +++e    aa+La+      e++ +++l+ d G   + +++l+ + dg+++v+s   +  LG + +d ++   l+e+fk+++g      ++a +rl +  e+ ++ Ls++ +++ ++      +s+ ++++l+ltra++e  +e  + r +e +++ l++a+++as++ +v l GG tr+  +++l+++ +g++p+ +      d + a+Gaa+ 
  MMETSP1174-20130828|8065_1  10 VIGVDLGAKQT-MTVKST--GDIIRNELGGHHSATLVSFSGR-ERFIGEAAVPQMSSCPQNTIHNLHLLLGQTCDafEANPRTHHYPFRRVAGKAerlEIVVDYAgsEQTFSPEALCGMLLGKLQENwttAARQqgLVSLVPPHVaFAVPKWMSTSARKSLQTASLIGGLpDPVTLVDESLalAATLAFKHPpvMEDQPKHVLLIDHGHTHLGLAVLKSEdDGTYSVLSDVSEPDLGVEHMDLQLFGVLQEKFKAKTGSAPVPPSKAARRLMNGVERLRKLLSTMDTASCSV------ESAEMDVTLTLTRAEMEGSCEAYLLRFRECLTRCLSEAHIAASDLAQVELLGGGTRMGLLHDLINDTLGRDPSSAFGqklDDAALAMGAALV 389
                 8******8775.555544..469*****************99.********************************44444455667777666554323444444333789**************975222443312445665554379**********************6678999*97522688999765213577899****************987478**************************************************************9999886......56778899****************************************************************9987522247899****975 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0005
   TIGR02350 493 tassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlk.eagdkleeeekekiekaveelkealkeedveek 575
                 ++s +l+ +e+  +v   +a ++ d ++++ +e+rn  +s++ +++++ + ++g+ l e++ + +++ +e++++ l +e+++e 
  MMETSP1174-20130828|8065_1 459 SSSVDLTPAEVTGLVAAENAMRAVDAEMQQIAEQRNAIESYVLEMRNAPHtKHGACLGEQQVKDLNALLEAAEDWLYSEEAAEA 542
                 667889999******9999************************9998865156777999999******9999999888876653 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.9e-26     4e-23       2     364 ..      11     395 ..      10     402 .. 0.83
   2 ?   -1.1   2.3     0.079   1.1e+02     485     565 ..     460     541 ..     445     644 .. 0.81

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 2.9e-26
   TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsledvkkeaeelpyeledakgemvrlkta...qg...evtPvevsaeiLkklkkraeealgke......lkgavitvPAYFddaqrqatkdAarlagl.nvlRLlnePta..AAvAYGldk.....aseglyavYDLGGGtFDvsiLkle.kGvFevlatgGdsaLGGDDfDralaklilkkagle....aelskeekkellkaaraakeaLtdaeevevevklegkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdld...PdevvAlGAalqadlLak 364
                 +G+DlG  + +   v +++  ++++e g    +  v++    +  +G++a  ++ + p+nti     l+G++ +  +++ ++++y ++   g+  rl+ +   +g   + +P  +   +L kl+++ ++a  ++        ++   vP +    +r++ + A+ + gl + + L++e  a  A +A+   +      + +++++ D G     +++Lk e +G + vl+   + +LG + +D  l+ ++ +k +++        ++ ++ l++ ++++++ L++ ++++++v+  ++d++ +l+r+e+e   e+++ +  e  +r l++a+++++++++v l GG tr+ l+++ +++  +++p +       d   A+GAal ad   k
  MMETSP1174-20130828|8065_1  11 IGVDLGAKQTMT--V-KSTGDIIRNELGGHHSATLVSFSGR-ERFIGEAAVPQMSSCPQNTIHNLHLLLGQTCDAFEANPRTHHYPFRRVAGKAERLEIVvdyAGseqTFSPEALCGMLLGKLQENWTTAARQQglvslvPPHVAFAVPKWMSTSARKSLQTASLIGGLpDPVTLVDESLAlaATLAFK--HppvmeDQPKHVLLIDHGHTHLGLAVLKSEdDGTYSVLSDVSEPDLGVEHMDLQLFGVLQEKFKAKtgsaPVPPSKAARRLMNGVERLRKLLSTMDTASCSVESAEMDVTLTLTRAEMEGSCEAYLLRFRECLTRCLSEAHIAASDLAQVELLGGGTRMGLLHDLINDTLGRDPSSAFGqklDDAALAMGAALVADKNLK 395
                 899**9998764..4.4567899999999999******999.999*******************************99999999999766665555544311211334899*************98777666554212112355689**********************7789*****87621556664..333544777899999*************8637***********************9999966655522113345677899********************************************************************************************99765542225999********997655 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.079
   TIGR01991 485 psygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealeka.lkadkdLlseeelkaikaaleklekaleeddaea 565
                  s+ L+  e++ +++      + D+e+ ++ae++   e  +  +++a  +++++ l e+++k ++a le++e+ l +++a++
  MMETSP1174-20130828|8065_1 460 SSVDLTPAEVTGLVAAENAMRAVDAEMQQIAEQRNAIESYVLEMRNApHTKHGACLGEQQVKDLNALLEAAEDWLYSEEAAE 541
                 6788889999999988888888999999999998777766655555526788899999999999999999988777666543 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   6.4   3.2e-09   4.3e-06      77     219 ..     568     724 ..     547     759 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 3.2e-09
   TIGR00990  77 rkdaekeaekkaeekkstapkaaavesadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskall.l.k........edPv......yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldlta 219
                 +  a+k a +   e + +  +aaa   a+   +  e++  +l + er +   k k++G   +++k++++a++ y+ a   + k        ed v         n+a c++ l+++++v + +  al ++p   kal rra  y+    y  a  d+  
  MMETSP1174-20130828|8065_1 568 KVAADKRAVE--LELEEEMKRAAAAREAEGDDNKAEKDSRRLPKAERMRKVTKHKQTGAVDFKEKNYKEAVKHYKEAYThCsKffdlspegEDEVkhikvgLLLNLAQCWVKLGNMDQVFKCAGDALVMEPLNCKALMRRAMVYESRKEYELAKRDIEL 724
                 4555665555..35555666677777777777777788889*********************************999742321333333336777322223457**********************************************999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.18s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 2192.17
//
Query:       MMETSP1174-20130828|8066_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.5   0.3      0.012   12.3   0.2    1.0  1  TIGR04083 rSAM_pep_methan: putative peptide-modifying radical SAM enzyme, Mhun_1560 family


Domain annotation for each model (and alignments):
>> TIGR04083  rSAM_pep_methan: putative peptide-modifying radical SAM enzyme, Mhun_1560 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     3e-06     0.012     264     331 ..       7      78 ..       4      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3e-06
   TIGR04083 264 vlGnv.kdkpsledlkeskagklleefke...yvdkeckecshikycrGGcpynaiaptdgeikgvdphcva 331
                 ++G+   +kp +e++   k  k+l+++k    y + + k+ +  ++c+G   y+   + +++ik+++   +a
  MMETSP1174-20130828|8066_1   7 IMGKKnVAKPVAEKVYTKKEKKKLTKMKAkitYHEARGKSGRASQFCEGQADYDKCQKLHAQIKTIEDAVTA 78 
                 677541479999*999999999999888622266777889999*********************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|8068_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1198.60
//
Query:       MMETSP1174-20130828|8071_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 972.81
//
Query:       MMETSP1174-20130828|8070_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.0   0.0      0.055   10.3   0.0    1.9  2  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases


Domain annotation for each model (and alignments):
>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.016        64     273     307 ..      44      78 ..      37      88 .. 0.81
   2 !   10.3   0.0   1.3e-05     0.055     268     308 ..     140     180 ..     124     202 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.016
   TIGR02534 273 GGlleakevaaiakaagialyGatsleGpiGtias 307
                 G ++ a +++ i +++ i+l G t+l+G i  + s
  MMETSP1174-20130828|8070_1  44 GIFTLAEDLSDIHDMTLIDLDGITTLQGDISVLQS 78 
                 555667889999****************9987665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1.3e-05
   TIGR02534 268 kiaksGGlleakevaaiakaagialyGatsleGpiGtiasa 308
                  ++ +G l+ a +++ i ++a i+l+G t l+G i +  s+
  MMETSP1174-20130828|8070_1 140 DLTGCGTLTLAEDLSDIRDIAHIDLHGITGLQGDISAFQSM 180
                 57889******************************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|8067_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1580.20
//
Query:       MMETSP1174-20130828|8072_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 2088.26
//
Query:       MMETSP1174-20130828|8074_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|8076_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-55  185.7  21.7    2.4e-55  185.5  15.1    1.0  1  TIGR00803 nst: UDP-galactose transporter
     0.0029   14.3   0.0     0.0037   14.0   0.0    1.1  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5  15.1   1.2e-58   2.4e-55       1     222 []      24     247 ..      24     247 .. 0.99

  Alignments for each domain:
  == domain 1    score: 185.5 bits;  conditional E-value: 1.2e-58
   TIGR00803   1 klsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa.ktlsegnlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 kl+VP+l+++ qnnl + al+nl+a  +qv  qlkil+ a +++ +l +s+++ +wfsl  l+ gva  +l q  a k  + +n+++g+ avl+a  +sg+agvyfek+lk    s++vrn+q+++ ++++ + ++ + d+++++++gff+gy+  v+ v+ll+++ggl+v++vvkyadn++k+++++ si+ s ++ +++fd+  +++f++g++lv ++++lY
  MMETSP1174-20130828|8076_1  24 KLAVPSLLYMIQNNLLYFALSNLDATPYQVCyQLKILTSAVFSVIMLRKSMSRSKWFSLLVLTAGVALTKLSQTDAsKAGVHQNSFLGFVAVLTASATSGFAGVYFEKVLKGARVSLWVRNIQMGVTSIVLSLGTAFIRDREFVVTNGFFYGYNGVVVSVILLQALGGLVVAMVVKYADNILKGFAASFSIVTSCIIEMIFFDFTPTMSFFFGALLVNASMVLY 247
                 79***********************************************************************9988888888********************************************************************************************************************************************9 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-06    0.0037      70     119 ..      91     141 ..      81     199 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.8e-06
   TIGR04022  70 iaiisaaDpslgqipqnhf.allevlrlegseeqkrfffeevlaGeRfgna 119
                 ++ +s++D+s + + qn f  ++ vl++++++    ++fe+vl+G+R++  
  MMETSP1174-20130828|8076_1  91 LTKLSQTDASKAGVHQNSFlGFVAVLTASATSGFAGVYFEKVLKGARVSLW 141
                 5679*************983599************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1134.28
//
Query:       MMETSP1174-20130828|8069_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|8077_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   21.4   0.0    7.1e-05   20.6   0.0    1.4  1  TIGR00568 alkb: alkylated DNA repair protein AlkB
  ------ inclusion threshold ------
      0.027   11.2   0.0      0.032   10.9   0.0    1.1  1  TIGR02306 RNA_lig_DRB0094: RNA ligase, DRB0094 family


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.5e-08   7.1e-05      71     170 ..      90     198 ..      67     202 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.5e-08
   TIGR00568  71 ksPdfPkdlgdlvekrvaeal....g.fedfkaeaalvnlYapgatlsl.HiDrsE...eDlrlPllslslGldaifllGglkRsekpkalrlesGDvviltGesRlaf 170
                 + P++P    dl  k +  a+    +     + +a lvn+Y  g++ s+ H D +        + + sls+G    f+  + + ++ + ++ l sG +v +tG   + +
  MMETSP1174-20130828|8077_1  90 HVPGLPARDMDLEAKGALRAVkdivEsLTSHRFNAILVNIYENGSEHSAwHSDDDPwlgDGSDVNVASLSFGTARDFHWRSKENHDVTDKVSLTSGSLVQMTGCFQQTY 198
                 4567776666665443333321000213467889***********9987477777433234568899************************************766554 PP

>> TIGR02306  RNA_lig_DRB0094: RNA ligase, DRB0094 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05     0.032     168     232 ..     132     193 ..     107     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR02306 168 dGtsilvayvtdeerflvlskglaskslvLredadnlyWkavenyqvvdeakealsarevaifGe 232
                 +G++   a+ +d++ +l  + ++   sl     a++ +W++ en++v d++    s+  v++ G 
  MMETSP1174-20130828|8077_1 132 NGSEH-SAWHSDDDPWLGDGSDVNVASLSFG-TARDFHWRSKENHDVTDKVS-LTSGSLVQMTGC 193
                 56666.79*******************9996.6899**************99.677777887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1074.12
//
Query:       MMETSP1174-20130828|8073_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-49  164.3   0.1    5.3e-49  164.2   0.0    1.0  1  TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
    0.00094   16.8   0.0     0.0028   15.2   0.0    1.7  2  TIGR02129 hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase


Domain annotation for each model (and alignments):
>> TIGR01182  eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0   2.6e-52   5.3e-49       5     201 ..      16     210 ..      12     213 .. 0.96

  Alignments for each domain:
  == domain 1    score: 164.2 bits;  conditional E-value: 2.6e-52
   TIGR01182   5 lkeakivpViaiddveealelakalvegGlrvlEvTlrteaaleairalrkevpevligaGTvlsaeqleeaeeaGAqFvvsPgleeelvklakekgipliPGvatpseilkalelGlsalKlFPaevvggvkmlkalagpfaqvkfvPTGGislanladylalpnvlvvggswlvpkdliaakdwdeitelareal 201
                 l ++k  +V++++ +e+a   a+a++ gG++ +E Tl  +  +e i++ + ++p +l+g GTvl+++q+e+ ++aG +F+vsP le+++++ ++ +++  + Gv tpse+ +a +lG++++KlFP    gg+++lka++gp++ +k+vPT G++++n+ dy+++++  ++  + l+++d +a++ wd+i+e ar++ 
  MMETSP1174-20130828|8073_1  16 LARQKCTAVVRTNCTEKARAAADAAIRGGINSVEFTLSIPGCVELIAEYS-QRPGLLVGGGTVLNTKQAEDIVNAGGKFIVSPVLEPSVIEWCALRNVVCMAGVYTPSEMWQAHKLGAHIVKLFPGA-AGGPAFLKAIKGPLPFLKVVPTTGVTEENCYDYMQVGAFGCGFTGVLFDADDMANERWDRIEERARRMS 210
                 7788999****************************************876.689***********************************************************************86.677************************************************************999875 PP

>> TIGR02129  hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.084   1.7e+02      79     104 ..      69      95 ..      59     118 .. 0.64
   2 !   15.2   0.0   1.4e-06    0.0028      15     124 ..      92     204 ..      79     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.084
   TIGR02129  79 alqvGGG..inaenakeyldegaskviv 104
                 +l vGGG  +n++ a++ +++g  k iv
  MMETSP1174-20130828|8073_1  69 GLLVGGGtvLNTKQAEDIVNAGG-KFIV 95 
                 45677774457788888887764.4444 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.4e-06
   TIGR02129  15 kqivGgtltdsekesvlktnfvsdksssyyaklykeddvkGahviklGan..nedaakealsaypgalqv..GGGinaenakeyldegaskvivtswlftdekldlerlkelvk 124
                 k iv   l+ s  e  +  n v        +++++ +++ Gah++kl ++     a  +a++    +l+v    G+ +en+ +y++ ga     t  lf  +++  er +++ +
  MMETSP1174-20130828|8073_1  92 KFIVSPVLEPSVIEWCALRNVVCMAGVYTPSEMWQAHKL-GAHIVKLFPGaaGGPAFLKAIKGPLPFLKVvpTTGVTEENCYDYMQVGAFGCGFTGVLFDADDMANERWDRIEE 204
                 555555555555555556666666666666777776665.9******666336778899999888888884558*********************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1005.85
//
Query:       MMETSP1174-20130828|8078_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1174-20130828|8081_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 2144.82
//
Query:       MMETSP1174-20130828|8085_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|8083_1  [L=1184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-07   26.9   2.0     0.0084   13.3   0.0    3.7  4  TIGR00436 era: GTP-binding protein Era
    1.4e-05   22.1   0.0    6.5e-05   19.9   0.0    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.8e-05   21.0   0.2        0.1    9.2   0.0    2.8  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    8.5e-05   20.1   0.0      0.058   10.9   0.0    3.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0011   16.6   0.1      0.084   10.5   0.0    2.8  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   7.8e-05     0.064       3      30 ..     326     353 ..     324     361 .. 0.88
   2 !   13.3   0.0     1e-05    0.0084      50     154 ..     501     602 ..     487     632 .. 0.69
   3 ?   -1.4   0.2      0.32   2.6e+02      97     216 ..     668     787 ..     657     798 .. 0.65
   4 ?   -2.4   0.0      0.63   5.2e+02     230     260 ..    1014    1044 ..    1012    1047 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.8e-05
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSp 30 
                  ai+G    GKSTL+N ll+ + ++ S+
  MMETSP1174-20130828|8083_1 326 FAIIGEQGHGKSTLINALLDSEELLPSS 353
                 59******************99988775 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1e-05
   TIGR00436  50 iifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedellleklqklkapvvlalnkldnkekdkllelidkeasllefk..eiveisalkgenvee 154
                 ++++D PGl  +  +      + ++ka+++vd ++   ++++   + ++++e+l +  ++++l    l ++    + +  ++ + + + k    ++i a++ e+ +e
  MMETSP1174-20130828|8083_1 501 VVLVDLPGLGDSCLAR----AQVAKKAMKDVDALIVAAETTRARSN-NVVKEQLSQETRRQLLLDGNLSRTIVVVTKSDQNSDEGRKNCKnpGLLKILAEENEKKDE 602
                 7899999998765443....578999******98766666666555.*******99888888777666666444444444444444454444677777776665554 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.32
   TIGR00436  97 ellleklqklkapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenveel..kaiveaklregpfyypedyvtdqeerFkisEiiREkilkllkeEiPysvaveieekklnek 216
                 +++++ l+   +  +  ++  d+ e+  + +  +  +++ ++ ++  +s  ++en++     +  +  ++ g +++ e+   + +    isE++RE  l+  + E+    +v++ +++++ +
  MMETSP1174-20130828|8083_1 668 KKIQNDLKAHAKDYDCEMVGHDESEQVVVTSSKEFFRIKGDNDDC-AMSHPTFENLDDTgvPRLQQILIKRGRLHKRENVKSAVHRLIDISEAMRE-FLEGGSGELSRQTTVQLSQQTTQSE 787
                 456666666666666666666666666666666666666666444.45666666665541134455566888899988888888888899999998.5677777888888887777777644 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.63
   TIGR00436  230 esQKkiiiGkkgkkikaiGieaRkkleklfd 260 
                  e  K+i++G+ +++  +i   aR  +++ +d
  MMETSP1174-20130828|8083_1 1014 ERRKGIMVGALAEHGNHILDTARSAMQARLD 1044
                  568**********************999877 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.9e-08   6.5e-05     141     209 ..     290     357 ..     277     372 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.9e-08
   TIGR03594 141 iSaehgrgik...dLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGt 209
                  Sae+++ i+   +++d+ +++l++ e  +    ++ p+ +aiiG    GKStL+Nall++e ++ s+  G 
  MMETSP1174-20130828|8083_1 290 TSAENKEAIGaesKMIDTWTDRLQKVELYT----KNIPCSFAIIGEQGHGKSTLINALLDSEELLPSSDTGA 357
                 466666655411134445555554444433....35589***********************9998877764 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00013       0.1      10      43 ..     326     359 ..     319     364 .. 0.88
   2 !    8.5   0.0    0.0002      0.17      58     167 ..     501     614 ..     492     626 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
   TIGR03918  10 ialfGrrNaGKSsliNaltgqdvaivsdvpGtTt 43 
                  a++G++  GKS+liNal++ +  + s+  G+ t
  MMETSP1174-20130828|8083_1 326 FAIIGEQGHGKSTLINALLDSEELLPSSDTGACT 359
                 699******************9999999998876 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0002
   TIGR03918  58 vvliDTaGldDegeLGelRvektrevlektdlallvvdaeae..leeleeelleelkekki......pvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiell 167
                 vvl+D +Gl D+      R + ++++++ +d  ++  +++ +  ++ ++e+l +e +++ +       +ivv++k+d++++e   ++ ++    ++++ ++++k++ +++ + l e  
  MMETSP1174-20130828|8083_1 501 VVLVDLPGLGDSC---LARAQVAKKAMKDVDALIVAAETTRArsNNVVKEQLSQETRRQLLldgnlsRTIVVVTKSDQNSDE-GRKNCKNPGLLKILAEENEKKDEKRRIDNDLKEFF 614
                 89*******9986...47999999*******999998876541133345666666555432222223799999****98875.33444444444445555555555566666666655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   7.1e-05     0.058      13      54 ..     318     359 ..     308     362 .. 0.82
   2 !    5.1   0.0    0.0044       3.6      61     145 ..     496     579 ..     493     602 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.1e-05
   TIGR03598  13 lpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrT 54 
                 + ++     a++G    GKS+liNaL+++++l   S t  +T
  MMETSP1174-20130828|8083_1 318 YTKNIPCSFAIIGEQGHGKSTLINALLDSEELLPSSDTGACT 359
                 5555566789********************999999886665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0044
   TIGR03598  61 evneelrlvDlPGYGyakvsk.eekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkks 145
                  ++  ++lvDlPG G +   + ++ +k +k +++ +   e+ ++    v ++ +l+++  +   ll+ +  +++vv+tK+D+ + +
  MMETSP1174-20130828|8083_1 496 PLKAGVVLVDLPGLGDSCLARaQVAKKAMKDVDALIVAAETTRARSNNV-VKEQLSQET-RRQLLLDGNLSRTIVVVTKSDQNSDE 579
                 5678899********7655441445555566666665555554433322.223233222.22234555556666777777776655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0001     0.084       7      27 ..     327     347 ..     322     360 .. 0.86
   2 ?    2.7   0.0     0.025        21      55     127 ..     501     578 ..     466     602 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
   TIGR00231   7 vivGhvdvGKstLlnsllknk 27 
                 +i+G+ ++GKstL+n ll+ +
  MMETSP1174-20130828|8083_1 327 AIIGEQGHGKSTLINALLDSE 347
                 69***************9877 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.025
   TIGR00231  55 vnllDTaG....qedfdairrlyvreverslevvdivilvldveeglekqtkeiihea..kkkgvpiilvvnKiDlkdd 127
                 v l+D++G      +++++ +  +++v++++  ++ + +  + + ++e+  +e ++++  + + + +i+vv+K D+++d
  MMETSP1174-20130828|8083_1 501 VVLVDLPGlgdsCLARAQVAKKAMKDVDALIVAAETTRA-RSNNVVKEQLSQETRRQLllDGNLSRTIVVVTKSDQNSD 578
                 678999998887566678899999999999999998888.554444444445555554115455899*********993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       322  (0.0784983); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.18s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 2790.63
//
Query:       MMETSP1174-20130828|8082_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1363.89
//
Query:       MMETSP1174-20130828|8084_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-49  163.2   0.0    8.2e-49  162.9   0.0    1.0  1  TIGR01066 rplM_bact: ribosomal protein L13
    3.4e-16   57.7   0.3    2.2e-15   55.1   0.2    1.9  1  TIGR01077 L13_A_E: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0     4e-52   8.2e-49      12     133 ..      19     140 ..      10     146 .. 0.97

  Alignments for each domain:
  == domain 1    score: 162.9 bits;  conditional E-value: 4e-52
   TIGR01066  12 rkwyvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkellekkpekvlekAvkgmlpknklgrkllkklkvykgsehphea 133
                  +w++ da+g+++Grla++++ ++rGkhk+ty  n d+GD+v+viNa k++ltgkk ++k+y++h+gy+gglk++t++e+ ++kpe++l++A+ gmlpkn+++r  lk+l++y g  h++ea
  MMETSP1174-20130828|8084_1  19 ATWHLCDAKGQVVGRLAAQLSPIIRGKHKPTYLKNADCGDNVVVINAGKMVLTGKKWKKKLYRWHTGYPGGLKQRTATEMFNRKPEEILRHAIAGMLPKNNMRRDCLKRLRIYPGLAHEFEA 140
                 57*********************************************************************************************************************988 PP

>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.2   1.1e-18   2.2e-15       3     107 ..      24     139 ..      22     145 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 1.1e-18
   TIGR01077   3 idaeglilGrLaskva............krlLeGekvvvvnaekivisGdkevvvekYkeklekkkktnprr.gPffprapdrilkrtvrgmlpkkkarGrealerlkvyvGiPkeld 107
                  da+g+++GrLa++++            k+   G +vvv+na k+v++G+k + ++ Y+ ++      ++r    +f r+p++il++++ gmlpk++ r r+ l+rl++y G  +e++
  MMETSP1174-20130828|8084_1  24 CDAKGQVVGRLAAQLSpiirgkhkptylKNADCGDNVVVINAGKMVLTGKK-WKKKLYRWHTGYPGGLKQRTaTEMFNRKPEEILRHAIAGMLPKNNMR-RDCLKRLRIYPGLAHEFE 139
                 699*********99863333333222224444699**************76.6777788777766655555548999*****************99988.9************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 561.90
//
Query:       MMETSP1174-20130828|8086_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1482.94
//
Query:       MMETSP1174-20130828|8087_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 1334.89
//
Query:       MMETSP1174-20130828|8088_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 670.10
//
Query:       MMETSP1174-20130828|8090_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-11   39.6   0.0    8.7e-11   39.3   0.0    1.1  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    7.8e-08   29.4   0.0      1e-07   29.1   0.0    1.0  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
    2.1e-05   21.6   0.0    2.4e-05   21.4   0.0    1.1  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    5.7e-05   20.2   0.0    7.7e-05   19.8   0.0    1.1  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family
    0.00017   18.4   0.0    0.00025   17.9   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    0.00047   16.8   0.0    0.00059   16.5   0.0    1.0  1  TIGR02918 TIGR02918: accessory Sec system glycosylation protein GtfA
     0.0012   15.6   0.1     0.0016   15.1   0.0    1.1  1  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
  ------ inclusion threshold ------
      0.015   12.1   0.0      0.019   11.8   0.0    1.2  1  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
      0.015   12.3   0.0      0.017   12.1   0.0    1.0  1  TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated
      0.022   11.5   0.1      0.047   10.4   0.0    1.6  1  TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family


Domain annotation for each model (and alignments):
>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.1e-13   8.7e-11     259     318 ..      71     129 ..      58     162 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 2.1e-13
   TIGR04047 259 vvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsGvPvvaselaPfteyldee 318
                  ++ Ga  d++l  L+ +A  ++  s+ EGfGL +lEa+A+G Pv+as+ +   e l  +
  MMETSP1174-20130828|8090_1  71 THVYGA-TDETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDTPAHRETLALS 129
                 566676.46789*************************************95555555544 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.5e-10     1e-07     231     305 ..      47     120 ..      38     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.5e-10
   TIGR03999 231 kLllvGdGPerseaeelvkelgledrvlflGkq.deveellslsDllllpsekesFGLaaLeamacgvpviasnvg 305
                  L+lvG  P+  e+ +++++ gl+   ++ G + +++++l+s +  ++ +s  e FGL +Leama+g pvias++ 
  MMETSP1174-20130828|8090_1  47 SLVLVGGEPDPRET-HWLRQSGLRYT-HVYGATdETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDTP 120
                 69*******98876.56789999865.555655156899999999999*************************975 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.8e-08   2.4e-05     228     304 ..      44     119 ..      13     132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.8e-08
   TIGR03088 228 erlrLvivGdGaarealealveaaGleklvwlaGertdiaellqalDvfvLpslaeGisntvLeamasglPviatav 304
                 +   Lv+vG  +   + ++ ++++Gl     +  + + +  l +++  +v  s+ eG  + +Leama+g Pvia + 
  MMETSP1174-20130828|8090_1  44 RVPSLVLVGGEPDP-RETHWLRQSGLRYTHVYGATDETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDT 119
                 44568888855554.456789999*998888777788888999988888999**********************986 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.9e-07   7.7e-05     274     320 ..      78     124 ..      69     133 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.9e-07
   TIGR02149 274 keelvellsaaevfvcPsvyePlGivnleamacetpvvasavGGipe 320
                  e l++l+s+a   v  s+ e +G+  leama + pv+as++   +e
  MMETSP1174-20130828|8090_1  78 DETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDTPAHRE 124
                 567999***********************************977666 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     6e-07   0.00025     293     335 ..      77     119 ..      66     127 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6e-07
   TIGR03449 293 pkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarv 335
                 + e l ++y +a  ++  s +e fGl  lea a+G Pv+a+++
  MMETSP1174-20130828|8090_1  77 TDETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDT 119
                 57889999*999999999**********************875 PP

>> TIGR02918  TIGR02918: accessory Sec system glycosylation protein GtfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06   0.00059     377     429 ..      70     124 ..      62     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.4e-06
   TIGR02918 377 yiklkGhkd..leevykdyelylsastseGfGltlleavGsGlgliGfdvnyGnq 429
                 y ++ G +d  l+++y+     ++ s  eGfGl llea+ +G ++i  d +   +
  MMETSP1174-20130828|8090_1  70 YTHVYGATDetLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDTPAHRE 124
                 6677775433399999999999************************999876555 PP

>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     4e-06    0.0016     337     377 ..      85     124 ..      74     131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4e-06
   TIGR02472 337 aarrkGifvnpaltePfGltlleaaacGlPivatedGGPrd 377
                  ++  Gi v  ++ e fGl llea a+G P++a++    r+
  MMETSP1174-20130828|8090_1  85 YSTAVGI-VALSIDEGFGLPLLEAMAAGCPVIASDTPAHRE 124
                 5555555.566789*******************99776666 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05     0.019     291     333 ..      78     120 ..      48     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
   TIGR04157 291 kekLyelYqiadvGvl.pSlhEqcsyvaiEmlmhglPligttst 333
                  e+L +lY  a vG++ +S+ E +++  +E +  g P+i++++ 
  MMETSP1174-20130828|8090_1  78 DETLRRLYSTA-VGIVaLSIDEGFGLPLLEAMAAGCPVIASDTP 120
                 57888999976.887737***********************997 PP

>> TIGR03087  stp1: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.1e-05     0.017     246     330 ..      36     119 ..       7     135 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
   TIGR03087 246 akevlPavrakrpeveflivGakPsdavraLaelpgv...vvtGsvaDvRPylahaavvvaPlriaRGvqnkvLEAmAmakpvvaspe 330
                   +  Pavr   p  ++++vG +P +   +  ++ g+    v G+  +    l ++av ++ l i  G    +LEAmA + pv+as +
  MMETSP1174-20130828|8090_1  36 LIRAGPAVRV--P--SLVLVGGEPDPRETHWLRQSGLrytHVYGATDETLRRLYSTAVGIVALSIDEGFGLPLLEAMAAGCPVIASDT 119
                 4555555542..3..477899999876655555555411167799888888899999****************************965 PP

>> TIGR04063  stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011     0.047     311     333 ..     104     126 ..      17     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
   TIGR04063 311 PLeamaqgrlvvasdvGGhreLi 333
                  Leama g  v+asd   hre +
  MMETSP1174-20130828|8090_1 104 LLEAMAAGCPVIASDTPAHRETL 126
                 49******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 767.19
//
Query:       MMETSP1174-20130828|8093_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   71.3   0.0    2.1e-20   71.1   0.0    1.0  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   5.2e-24   2.1e-20     136     208 ..       6      79 ..       3      81 .] 0.92

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 5.2e-24
   TIGR00742 136 eldsyeelvdfveivsdkG.ikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksle 208
                 + d ye l dfv++v+    +k+  vhar a+l GlsP +nr +Pplr + v++l +dfp+l + +nGG++s +
  MMETSP1174-20130828|8093_1   6 PEDRYETLADFVDTVTSGCqVKRVHVHARSAVLGGLSPVKNRSVPPLRPDMVHRLARDFPHLSVTLNGGLQSAQ 79 
                 5799**********975444899**********************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1174-20130828|8094_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|8095_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.71    6.7   9.5       0.84    6.5   6.6    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.6    0.0002      0.84       7      82 ..      36     111 ..      26     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0002
   TIGR01554   7 klaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeea 82 
                  +a++ k+++k  ++ ++e a +e+++ + + ++ + + +++e+le+ +++ee++ ++++ + ++e++++e++   
  MMETSP1174-20130828|8095_1  36 LIADQLKSAEKRRSASEKERAVKEQSSLEDALEKSRLMAEAVEELERSKKAEERRTKRQKVGPEPEPTKDEDNTVC 111
                 5677778888888888888888888888889999999999999999999999999999988888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1174-20130828|8091_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   35.2   0.0    2.3e-09   34.6   0.0    1.2  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    2.1e-08   31.3   0.0    3.3e-08   30.6   0.0    1.3  1  TIGR01141 hisC: histidinol-phosphate transaminase
    5.5e-06   23.4   0.0    7.1e-06   23.0   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    7.9e-06   22.8   0.0    1.3e-05   22.1   0.0    1.2  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    3.4e-05   20.8   0.0    6.3e-05   19.9   0.0    1.3  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    0.00065   16.5   0.0     0.0009   16.0   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.4e-12   2.3e-09      80     210 ..     148     298 ..     123     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3.4e-12
   TIGR01140  80 llprllapkrv.lvlaptyseyaralraagaevvels.............dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea....lpglvVl..rSltKffglaGlRlGfvvAe 210
                 ++ r +++++   ++apt++++   +r  g+ev++++              l++++a+ ++   l+ +  +NPtG   ++++ +a+ +++k++  ++  D A+  f   + +++  +      +g +Vl  +S+ K fgl G R G + A 
  MMETSP1174-20130828|8091_1 148 MVSRFVGEGTPiYLPAPTWANHIPIMRDGGLEVKHYNyydqetcglnlagMLDDIRAAPKKSVFLLHACAHNPTGVDPTPDQWRAISDACKEMDHFVFFDFAYQGFASGDAVCDAFALrhfiDEGHLVLmsQSFSKNFGLYGERAGALSAV 298
                 566777777766899*******************************777766666555566666666778*************************************99977766555577755555553579*************98774 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.8e-11   3.3e-08      75     223 ..     135     296 ..     113     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.8e-11
   TIGR01141  75 illgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked..gqedleavle.aakekvklvfl..asPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee......asvlellaeypnlvvlrTlSKafgLAglRvGyai 223
                  + g G+  +   ++  f+ +g+ ++ + pt++ +  + +  g evk++++ ++     +l+ +l+ +++   k vfl  a  +nPtG   + ++ +++ ++  e d +V  D AY  F++            ++ e   +++++++SK fgL g R G + 
  MMETSP1174-20130828|8091_1 135 TISGTGALRIGAEMVSRFVGEGTPIYLPAPTWANHIPIMRDGGLEVKHYNYYDQetCGLNLAGMLDdIRAAPKKSVFLlhACAHNPTGVDPTPDQWRAISDACkEmDHFVFFDFAYQGFASGdavcdaFALRHFIDEGHLVLMSQSFSKNFGLYGERAGALS 296
                 566677777777788899********************************9988773344555544333334444555223469*****************99879**************995654333333344555567889**************9765 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     1e-08   7.1e-06      56     264 ..      87     306 ..      50     343 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1e-08
   TIGR01265  56 avadavrsgkfngYapsvGvlaareavaeylskeleakleaddv..vltsGcsqaielvieala...naganiLvPrPgfplYetlakalglevrkydllpekdweidldele...alaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatf..vplakl.askvPvlslggiskrwlvPGWrlGWlivvdpkgiled 264
                 a +  v+s +   Ya  +G+ +  ++  ++   e ++ l+++ v  v t  ++ a+++  e ++     g  i +P P++++   + +  glev++y+   ++   ++l ++      a +k v l+     nP+G   + d  + + + ++++   ++ D  Y+ ++ gda     +l ++ ++   vl+ ++ sk++   G r G l  v   +  +d
  MMETSP1174-20130828|8091_1  87 AETRIVSSLQNKEYAGISGLDSFVDEALKFAYGEDSSVLTEERVagVQTISGTGALRIGAEMVSrfvGEGTPIYLPAPTWANHIPIMRDGGLEVKHYNYYDQETCGLNLAGMLddiRAAPKKSVFLLHACAHNPTGVDPTPDQWRAISDACKEMDHFVFFDFAYQGFASGDAVCdaFALRHFiDEGHLVLMSQSFSKNFGLYGERAGALSAVCADKEERD 306
                 445667888888999999999999999999999999999999884445666778888866666532268999************************************9987421235678999999999*****************************************6541134445515556677888999999999999888755544444444 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.9e-08   1.3e-05     172     256 ..     208     293 ..     189     317 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.9e-08
   TIGR03542 172 kkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksi...yeiegakecaieirsfsktlGftGvrlg 256
                 k+v ++  C   nPtG   t +q +++ d  ke d  ++fd ay+ f s +++  +    + i++ +   +  +sfsk+ G+ G r g
  MMETSP1174-20130828|8091_1 208 KSVFLLHACA-HNPTGVDPTPDQWRAISDACKEMDHFVFFDFAYQGFASGDAVCDAFalrHFIDEGHL-VLMSQSFSKNFGLYGERAG 293
                 4477777786.68****************************************987533344666655.56679**********9986 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.2e-08   6.3e-05     142     219 ..     214     296 ..     189     311 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9.2e-08
   TIGR03537 142 inyphnptGaeapasylkevaelareygiilasdecyaeiyseekpas..vlevgl.en..vlafhslskrsGmtGyrsgfla 219
                  +  hnptG   + + ++ ++++++e +  ++ d  y    s+++     +l+  + e   vl+ +s sk  G+ G r+g l+
  MMETSP1174-20130828|8091_1 214 HACAHNPTGVDPTPDQWRAISDACKEMDHFVFFDFAYQGFASGDAVCDafALRHFIdEGhlVLMSQSFSKNFGLYGERAGALS 296
                 4568****************************************6554114443341443366667899*********99764 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-06    0.0009     147     222 ..     213     293 ..     149     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-06
   TIGR03947 147 vvnfPhnPtGasvderelsellelaaesgavllWdaafa.....dlvydaeplpepsaaadrvisfgtlskafGlpGlrvG 222
                 +    hnPtG+  ++ + +++ +  +e + ++ +d a++     d v da +l +   +   v+    +sk fGl G r G
  MMETSP1174-20130828|8091_1 213 LHACAHNPTGVDPTPDQWRAISDACKEMDHFVFFDFAYQgfasgDAVCDAFALRHFIDEGHLVLMSQSFSKNFGLYGERAG 293
                 45568******************************886422222788999999999999999****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1507.45
//
Query:       MMETSP1174-20130828|8096_1  [L=828]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-298  988.6   0.0   3.7e-298  988.3   0.0    1.0  1  TIGR01815 TrpE-clade3: anthranilate synthase
    1.5e-80  269.2   0.0    9.1e-80  266.7   0.0    1.9  1  TIGR00564 trpE_most: anthranilate synthase component I
      4e-70  235.1   0.0      5e-70  234.8   0.0    1.1  1  TIGR01820 TrpE-arch: anthranilate synthase component I
      1e-65  220.4   0.0    2.3e-65  219.2   0.0    1.5  1  TIGR00565 trpE_proteo: anthranilate synthase component I
    1.3e-65  219.8   0.0    1.8e-65  219.4   0.0    1.2  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
    8.2e-55  184.0   0.0    1.1e-54  183.6   0.0    1.2  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    9.6e-53  177.3   0.0      5e-27   92.3   0.0    2.1  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
      3e-38  129.4   0.0    4.6e-38  128.8   0.0    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    2.9e-34  116.7   0.0    3.9e-34  116.2   0.0    1.2  1  TIGR00543 isochor_syn: isochorismate synthase
      1e-33  114.6   0.0    1.5e-33  114.1   0.0    1.2  1  TIGR03494 salicyl_syn: salicylate synthase
    3.6e-19   66.7   0.0    6.1e-19   66.0   0.0    1.3  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.9e-14   51.2   0.0    6.9e-14   49.4   0.0    1.7  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    0.00073   17.2   0.1       0.29    8.7   0.0    2.3  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  988.3   0.0  1.2e-300  3.7e-298       1     707 [.      79     822 ..      79     826 .. 0.93

  Alignments for each domain:
  == domain 1    score: 988.3 bits;  conditional E-value: 1.2e-300
   TIGR01815   1 yrtkGgvvvtrratevk.letaleevvdalderrGallsssyeypGrykrwalgfvdppvalsasGrtlriealnerGevllpviaealkkvedlakle.....eaa...rrvtasvkspdevlaeeerskqpsvftvlravldlfaseedellGlyGafgydlafqfeaieqklerpddqrdlvlylpdelvvvdyyaakaflveydfitaagstegleadgedepyrsdtsiepq.adhkpGeyaklvekakeafrrGdlfevvpgqkffeaceaapsevferlkainpspyeffvnlGrgeylvgaspemfvrve....GrrvetcpisGtikrGddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksprrwyGGavGrlgfnGdlntGltlrtirlkdgiaevraGatllydsdpeaeeaetelkaaalieairdakaadaakeesavakvg...........eGkrillvdhedsfvhtlanylrqtGasvttlrhsv.aeelld.......eerpdlvvlspGpGrpkdfdvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepd.....vlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienvvdk 707
                 y tkG+v v+  +++++ +++++e+++d+ld +rGal++ssye+pGry rw lgf++pp+++s +Gr ++++alnerG+vll +i  +lk   ++a+le     ea+   +++++s++ p  +++eeerskqps f+v+r + dlf+ ++d +lGlyG+fgydlafqfe+++++ er +dq+dl+lylpd++vvvd+    a+ ++ydf  a +st+  ++ g +ep+ +    + +  d  pGe++  v+ ake fr G+lfe v +q+f e+  a+ps +f+rl++ np+py+ff+nlG++eylvgaspemfvr e    G rvetcpisGti rG+ a++daa+i+++l+  k+e+eltmctdvdrndksr+cepGsv+v+Grrqie+ys+lihtvdhveG lr+++daldafl+h+wavtvtGapk +a+qf+ek+e spr+wyGGavG +gf+G+lntGltlrti ++dg a+vraGatll+dsdp++ee etelka+a+++a+ +a  +d+a+  +a   ++           +  +++l+dhedsfvhtlanylrqtGa v t r +  a++l+d         rpdlvvlspGpGrp+dfd+ +ti++++a+++p+fGvclGlqg+ve fGG l+vl++p+hGk+s +   ++       +f +lp+e+ v ryhsl   ++ +p +l+vta ++dgv+maieh+ lp+aavqfhpesilt + + Gl+++en +d 
  MMETSP1174-20130828|8096_1  79 YMTKGSVGVSVAVNDLEnPRETIEKLIDTLDMKRGALFTSSYEFPGRYARWTLGFINPPIEISGTGRDFKVKALNERGKVLLLAIETSLKAHPHVATLEmgegeEASnvlQQLQGSIHTPVGYFPEEERSKQPSLFSVVRCIKDLFSHPDDAQLGLYGSFGYDLAFQFEPMHLTQERREDQQDLLLYLPDQIVVVDQQRMSAWELRYDFEWAGASTDWEPRVGSHEPFTPALGNQGRkRDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSALFRRLRTRNPAPYGFFINLGNQEYLVGASPEMFVRCEstdgGMRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDAVVRADVIDNAEVDNADVDGSgtvsdeddasrTTLKVVLIDHEDSFVHTLANYLRQTGAEVLTTRSGEpARQLMDsfeagdkSARPDLVVLSPGPGRPSDFDLSGTISRCMAMKIPMFGVCLGLQGMVEYFGGTLGVLSYPMHGKPSFVTTDGSAqdhsyPIFRDLPKEFEVARYHSLHGLPETMPDDLRVTARTADGVVMAIEHKSLPLAAVQFHPESILT-QPNYGLKILENCLDV 822
                 89**********999863799********************************************************************987666654311121443222678999*****************************************************************************************************************9987766559*****************************************************************************97666578***********************************************************************************************************************************************************************************************9887665555544599999999888889***************************9998547888873333333479**************************************************************998754422233469***********************************************************9.5789*******9886 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   0.0   2.9e-82   9.1e-80      91     454 ..     231     587 ..     204     588 .. 0.91

  Alignments for each domain:
  == domain 1    score: 266.7 bits;  conditional E-value: 2.9e-82
   TIGR00564  91 sggavGylgydtvrlveklkeeaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkelekavkaleekkesftsnvekeeyeekvakakeyikaGdifqvvlSqrleakveakpfelYrkLRtvNPSpylyyldled.felvgsSPEllvkvk....gkrvetrPiAGtrkRGatkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGAPKvrAmelidelEkekRgiYgGavgylsfdgdvdtaiaiRtmvlkdgvayvqAgaGiVaDSdpeaEyeEtlnKakallrai 454
                 + g+ G +gyd+   +e+++ ++e + +  dlll+l ++++v D+++ ++  ++++ + a+ s  ++ + r+ +     +++ ++        ++  + ++   e+  kv+ ake+ + G++f  vlSq ++ + +a+p +l+r+LRt NP+py ++++l +   lvg+SPE++v+ +    g rvet Pi Gt  RG+t  eD+a  +e+la++Ke  E +m  D+ RND ++++++gsv+v    +ie ys ++H v +VeG l+++++a+Da+     a T++GAPK  Am+ +++ E + R+ YgGavg ++fdg+++t +++Rt+ ++dg+a v Aga + +DSdp++E +Et  Ka a+l a+
  MMETSP1174-20130828|8096_1 231 QLGLYGSFGYDLAFQFEPMHLTQERREDQQDLLLYLPDQIVVVDQQRMSAWELRYDFEWAGAS--TDWEPRVGS-----HEPFTP-----ALGNQGRKRDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSALFRRLRTRNPAPYGFFINLGNqEYLVGASPEMFVRCEstdgGMRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDAV 587
                 45899****************************************999998888886666664..455555544.....334433.....33444456678899********************************************************983469*********9988886667***********************************************************************************************************************************************************************************99875 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.8   0.0   1.6e-72     5e-70     187     448 ..     321     587 ..     175     588 .. 0.89

  Alignments for each domain:
  == domain 1    score: 234.8 bits;  conditional E-value: 1.6e-72
   TIGR01820 187 keefeeavekakekifeGdifqvvlSrklelrldldplelYaklreiNPSPYmyllefgdr.aivGaSPEtlvrve....krtveinPiAGtapRgkseeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGaPKirAmeiieelEkepRgvYgGgvGyfslngdadlAiviRtaliekkklriqaGAGivaDSdPekEfeEterKmkavlkai 448
                   ef + v+ ake+ + G++f +vlS++ +     +p +l+++lr+ NP+PY ++++ g++ ++vGaSPE++vr e    + +ve+ Pi Gt+ Rg++  eD +  ke+L++ Ke  E +m  D+ RND  +++e+gsv+v +  +++ ys+  H + +v g L++  da+da+     A t++GaPK  Am+ +e+ E++pR+ YgG+vG  + +g+ +  +++Rt+ i++ +++++aGA +  DSdP++E +Ete K++a+l+a+
  MMETSP1174-20130828|8096_1 321 PGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSALFRRLRTRNPAPYGFFINLGNQeYLVGASPEMFVRCEstdgGMRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDAV 587
                 567*******************************************************975279***********97777789*************************************************************************************************************************************************************************************997 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   7.3e-68   2.3e-65      35     496 ..     130     590 ..     101     592 .. 0.86

  Alignments for each domain:
  == domain 1    score: 219.2 bits;  conditional E-value: 7.3e-68
   TIGR00565  35 slllvdaalkitclgdivtikalsnnGeallkkldaalkal.....vea.vqsenalvlrflkvkkl.....ldedakllsasvfdalrllkslkqkpkepealllgGlfsydlvanfedlpqlkakndnvpdfifylaenlividhkeksveikaalfaereekqvaiakldlkeaqkskkadfvpkvsaasreveanlsdeefegvvkalkkeikkGeifqvvpsrrfslecpetlaa.yyqlkksnPsPymfylk.dedfilfGasPesalkydaes..rqleiyPiaGtrprGkdadGnidrdldsrlelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGaPkikalqliyqlenqrrgsyGGavGyltseGdldtcivirsalvkngiavvqaGaGvvldsvPqseadetrakaravlkairkv 496
                 +l +++  + i   g    +kal++ G+ ll  +++ lka      +e  + +e + vl+ l+ + +       e+ +  ++s+f  +r +k+l ++p +   l l G f ydl  +fe++   + + ++ +d  +yl ++++v+d ++ s+       + r++ + a a +d +  +   + +f p   ++ r+   ++   ef+  vk+ k+e ++G++f +v+s+ f  +   + +a + +l+  nP+Py f+++  +   l GasPe  ++ +++    ++e  Pi+Gt  rG+ a      +  +r++ e+  + ke++e  m  d+ rnd +r+c++g+ +v    +++ ys+++h v  v G lr++ dal a+ +   + t++GaPk  a+q++ + e   r+ yGGavG +  +G+l+t +++r+  +++g a v+aGa  ++ds+P se  et  ka a+l+a+ ++
  MMETSP1174-20130828|8096_1 130 TLGFINPPIEISGTGRDFKVKALNERGKVLLLAIETSLKAHphvatLEMgEGEEASNVLQQLQGSIHtpvgyFPEEERSKQPSLFSVVRCIKDLFSHPDDA-QLGLYGSFGYDLAFQFEPMHLTQERREDQQDLLLYLPDQIVVVDQQRMSAW------ELRYDFEWAGASTDWEP-RVGSHEPFTPALGNQGRK--RDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSAlFRRLRTRNPAPYGFFINlGNQEYLVGASPEMFVRCESTDggMRVETCPISGTIGRGNTA-----LEDAARIK-EILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDAVVRA 590
                 566778888999999999*********************9877333222133445566666554432111225799999*******************998.788899*************99999999*****************9988764......44445566777777654.455677999999988876..567889****************************9998877663779*************95577789***********99873368999*******998776.....45467876.88899**********************************************************************************************************************************************************9876 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.4   0.0   5.7e-68   1.8e-65       3     354 ..     234     582 ..     232     583 .. 0.91

  Alignments for each domain:
  == domain 1    score: 219.4 bits;  conditional E-value: 5.7e-68
   TIGR01824   3 llgllaydvareleaildlkteekglpvlallryeaavaldeeeqivavaeaeaekegafataadalaavaaatslaspdvgplaadlealidraayetavkrikdyikaGdvfQaNlsrrltariaaevdplalfealraanpapyailleepgvd.vvsaSPElllkre....grevqtrPIaGTrargadlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTGaPKvraleiIeelEptrRgpytGsvgvidadGdadlnilIRTleaaearlelrvGaGivadSdpegEydEteaKara 354
                 l g + yd+a + e+++ +++++++  +l l+ ++ +v++d++++ ++  + + e+ ga +  + ++ + +  t+      g      +  +++ ++ ++vk +k+  + G++f a ls+ +t +  a+  p alf +lr++npapy  +++  +++ +v aSPE++++ e    g  v+t PI GT  rg++  eD+a+++e+la+ K+  E  m  D+ RND +r+ce G+v+v   +++e y++++H v +V+g Lreg+++ d++     + ++TGaPK  a++ +e+ E+ +R+ y G+vg +++dG+++  +++RT++ ++++ ++r+Ga +  dSdp++E +Ete Ka a
  MMETSP1174-20130828|8096_1 234 LYGSFGYDLAFQFEPMHLTQERREDQQDLLLYLPDQIVVVDQQRMSAWELRYDFEWAGASTDWEPRVGSHEPFTPA----LGNQG--RKRDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEP--ATAPPSALFRRLRTRNPAPYGFFINLGNQEyLVGASPEMFVRCEstdgGMRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASA 582
                 67899**************************************888888888888887776655555444444444....33333..333478********************************..78889********************98876599********9763332459********************************************************************************************************************************************************************************987 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   3.6e-57   1.1e-54      71     327 ..     314     581 ..     234     583 .. 0.83

  Alignments for each domain:
  == domain 1    score: 183.6 bits;  conditional E-value: 3.6e-57
   TIGR00553  71 t......raeyaeaikkvqeelkaGdvYqanltqqleatldgdplalyrklrkeqpapfsaflelgek.avlslSpElFlsvdgs....eletkPiKGTlprgadpeeDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllralFPggSiTGaPKlrameiikelEkqrRgvYcGaiGllspegeldlnvaIRTlelsggeavlgvGggivadSdaeaEfeEvllKak 327
                 +        e+  ++k  +ee + G+ ++a l+q ++   ++ p al+r+lr+++pap++ f++lg++  ++  SpE+F++++ +    ++et Pi GT+ rg+++ eD+a ++++ ++ K+ +E  m +D  RnD +Ri+e+gsv+v    ++e y+++ + v +v++ lre  ++ d++     +  +TGaPK +am+ +++ E+++R  Y Ga+Gl+ + g+l++ +++RT+++++g+a + +G+ + +dSd+++E +E+ lKa 
  MMETSP1174-20130828|8096_1 314 GrkrdmpPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSALFRRLRTRNPAPYGFFINLGNQeYLVGASPEMFVRCESTdggmRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKAS 581
                 134333367999****************************************************986516889*******9964323369********************************************************************************************************************************************************************************97 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.1e-26   3.4e-24     473     740 ..     324     586 ..     316     588 .. 0.86
   2 !   92.3   0.0   1.6e-29     5e-27       5     203 ..     619     822 ..     615     827 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.1e-26
   TIGR01823 473 yakavkaCqeeleaGdsyelCLtdetlvvlpaevsqdwelykrlrklnPaafsgfvrlkhvk.llsssPekflevdrds...rlklkPikGtvkkeedmsleka...rkiLksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvkakvessaskktrysgldvLkkslPPGsmtGaPkkrsvrlLedvedrkrGiysGvlGyldvtgsgefsvlirsafkykdedlWriGaGGavtvLstpeGeyeemltklesvlqi 740
                 ++ +vk  +ee++ G+ +e  L + t+ + pa+   +  l++rlr +nPa++  f++l++   l+ +sPe f+  +  +   r++  Pi Gt+ +++  +le+a   ++iL ++ke +e+ m  D+ rnD   +++ g+vrv    ++e +++    v +v +   +         +ld++       ++tGaPk  +++++e+ e   r  y G +G    +g  +    +r+++  +++   r  aG  +   s p+ e  e  +k+ ++l++
  MMETSP1174-20130828|8096_1 324 FSSKVKLAKEEFRVGNLFEAVLSQ-TF-TEPATAP-PSALFRRLRTRNPAPYGFFINLGNQEyLVGASPEMFVRCESTDggmRVETCPISGTIGRGNT-ALEDAariKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFD------ALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVR--AGATLLFDSDPDSEERETELKASAMLDA 586
                 67889999***********99975.44.4444444.578*******************987648899******99865434488999*******9876.56655222578****************************************************99988777......8988776677889*********************************************99877776655..6667888899999999999999988876 PP

  == domain 2    score: 92.3 bits;  conditional E-value: 1.6e-29
   TIGR01823   5 rlnvLfiDayDsftynvvallekaldvrvsvitvhsDkldddllellq......lfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaa..ifegvss.....vkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvkseke.svkllknflkl 203
                  l+v++iD  Dsf + + + l ++    + v+t  s  +  +l++ ++      + d +v+ PGPG P   + +g +s+   +     +P++G+CLG+q ++ + G +++ l +p+hG+ s v+t  +a      ++      +++ ryhsL+  +e++     l ++    d ++m++++k  P   vq+hPes+ ++ +  +k+l+n l++
  MMETSP1174-20130828|8096_1 619 TLKVVLIDHEDSFVHTLANYLRQTG---AEVLTTRSGEPARQLMDSFEagdksaRPDLVVLSPGPGRPSDFDLSGTISRCMAMK----IPMFGVCLGLQGMVEYFGGTLGVLSYPMHGKPSFVTTDGSAqdHSYPIFRdlpkeFEVARYHSLHGLPETMPD--DLRVTARTADGVVMAIEHKSLPLAAVQFHPESILTQPNyGLKILENCLDV 822
                 689***************9998875...469************998872221114578**********99999******99988....***********************************99765412333344345557***********9998766..344555566789**********************9999899*****9986 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   1.5e-40   4.6e-38       2     190 ..     622     820 ..     621     822 .. 0.92

  Alignments for each domain:
  == domain 1    score: 128.8 bits;  conditional E-value: 1.5e-40
   TIGR00566   2 vllidnydsftynlvqlleelgaevvvkrndsltlqeieallplls......ivisPGPctPdeaaissleliehlaGklPilGvClGhqalaqafGadvvraekvkhGkvseiehngaav..faglfn..PdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilse..lGkellanfl 190
                 v+lid  dsf + l ++l + gaev+ +r  +   q ++ + +         +v+sPGP+ P +  +s   + + +a k+P++GvClG q +   fG+ +  ++  +hGk s ++ +g+a     ++f   P+ ++++ryhsl+  +et+++ l vta +     +mai h+ lpl  vqfhPesil++   G ++l+n l
  MMETSP1174-20130828|8096_1 622 VVLIDHEDSFVHTLANYLRQTGAEVLTTRSGEPARQLMDSFEAGDKsarpdlVVLSPGPGRPSDFDLS-GTISRCMAMKIPMFGVCLGLQGMVEYFGGTLGVLSYPMHGKPSFVTTDGSAQdhSYPIFRdlPKEFEVARYHSLHGLPETMPDDLRVTARTADG-VVMAIEHKSLPLAAVQFHPESILTQpnYGLKILENCL 820
                 89********************************999999987554578898999************9.89999********************************************98622456676789***************************9998.9**********************95337999999987 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.2e-36   3.9e-34      81     348 ..     315     586 ..     243     587 .. 0.85

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.2e-36
   TIGR00543  81 kkeeidkeawaeaveealeeirqgkleKvVLarelelklaedievaavleelrqqnkdaylFlleepkggvflGatPErLlsreke....eleteALAGtvkrsadkeedaklgekllkdeKnlrEhqlVvekirreLekice..slevsekpellklakvqHLytkikarlkkeksllkllkqLhPTPA..vgGlPreeAlelireiEtfdRglYaapiGwldkegngefiVaiRSalvedeqvrlyAGaGivadSdpesEweEvelKlatllra 348
                 +k ++   +++ +v+ a ee+r g+l   VL++  +++    + ++a++++lr +n++ y F+++ ++++ ++Ga+PE  ++ e +    ++et ++ Gt+ r++++ eda   ++ l ++K++ E  +  +  r++   ice  s+ v  + ++ + +k+ H   ++++ l ++ ++l+    L  T A  v G P++ A+++++++E   R++Y++ +G+++ +g+ +   ++R  +++d+q+ + AGa ++ dSdp+sE +E+elK++++l+a
  MMETSP1174-20130828|8096_1 315 RKRDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQ--TFTEPATAPPSALFRRLRTRNPAPYGFFINLGNQEYLVGASPEMFVRCESTdggmRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEpgSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAF--LCHTWAvtVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDA 586
                 34667778999********************97..56779999**************************************99875333479**************************************************86678889999********************985555543..3335541278*******************************************************************************987 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   4.8e-36   1.5e-33      54     423 ..     209     587 ..     181     589 .. 0.86

  Alignments for each domain:
  == domain 1    score: 114.1 bits;  conditional E-value: 4.8e-36
   TIGR03494  54 rqkasgsiadvvreavdalllegsrvyGqvgfefavhar..gl.sfklgerpllellvprteivveedevtltgvskee..leeleelvkeattrvqiepleqasavdtetdaseykervaaavaeiaagkYkkvilsRavelpaavDlpatlllgRrkntPvRsfllrlgekea.lGfsPelvlsvra.dg..kvvtePLaGtRaleegpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiPkaaaieailrleetpReLYsGavllieadetldaaLvLRavyqksektwlqaGaGiiaqstPeReleetceklasiapyl 423
                 +q ++ s+  ++++  +++ +    +yG  g++ a       l + ++ +++ l l +p + +vv ++++   +   ++    + +++   ++++ + +p  +++    +  + e+ ++v+ a +e + g+    +ls + + pa     a ++  R +n     f+++lg++e  +G sPe+ +  ++ dg  +v t P++Gt  +++++ e+++  +e+l ++ke  e  +      ++ +++cepg+v v    ++       h    v g L e+ da+daf     a+t +G Pka a++ + + e +pR+ Y Gav l+  d+ l++ L+LR+++ +++++ ++aGa ++ +s+P+ e +et  k +++++ +
  MMETSP1174-20130828|8096_1 209 KQPSLFSVVRCIKDLFSHPDDAQLGLYGSFGYDLAFQFEpmHLtQERREDQQDLLLYLPDQIVVVDQQRMSAWELRYDFewAGASTDWEPRVGSHEPFTPALGNQGRKRDMPPGEFSSKVKLAKEEFRVGNLFEAVLSQTFTEPATAPPSALFRRLRTRNPAPYGFFINLGNQEYlVGASPEMFVRCEStDGgmRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEGYLREGFDALDAFLCHTWAVTVTGAPKAWAMQFVEKHEASPRQWYGGAVGLVGFDGHLNTGLTLRTIHIQDGQANVRAGATLLFDSDPDSEERETELKASAMLDAV 587
                 344447888899999999999999999988777665433112303333444556688999999999999998887766511445667777777777888888888888899999*******************************9999999999999998889********98537*****988765413334899******************************************************************************************************************************************************************************99998866 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.9e-21   6.1e-19       4     182 ..     625     821 ..     622     825 .. 0.74

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.9e-21
   TIGR00888   4 ldfgsqYaqliaRrlrelgvyselvpatttleei........kevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygkael.....evlded.elfkglekelkvWmshg..DkvkelPegfkvlaksencpvaalkkeekklyGvqfhPevtht..ekGkellenfvk 182
                 +d +  +++ +a  lr++g +   +   +++ ++        k+++p  ++ls gP    + + + + ++ + +++P++G+C+G+q +++++Gg+ +  +   +gk +      + +d++  +f++l+ke++v   h      +++P++ +v+a+++   v a+++++ +l  vqfhPe   t  ++G ++len ++
  MMETSP1174-20130828|8096_1 625 IDHEDSFVHTLANYLRQTGAEVLTTRSGEPARQLmdsfeagdKSARPDLVVLSPGPGRPSDFDLSGTISRCMAMKIPMFGVCLGLQGMVEYFGGTLGVLSYPMHGKPSFvttdgSAQDHSyPIFRDLPKEFEVARYHSlhGLPETMPDDLRVTARTADGVVMAIEHKSLPLAAVQFHPESILTqpNYGLKILENCLD 821
                 5555666666666666665555444444444444111122114567899**********************************************998776666665540000044454456*********997777511556899*********************************75551179******9876 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.2e-16   6.9e-14     169     341 ..     613     804 ..     555     810 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 2.2e-16
   TIGR01368 169 akkegkklrvvvidl..GvKenilreLvkrgvevtvvpadtsaeeik........klnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdees.................lkeeelevthvnlnDgtveglehkelpvfsvQyHPea 341
                   ++ ++l+vv+id    + ++  + L ++g+ev       +a++++        + +pd ++ls GPG P++ +    t+++++  kiP+fG+clG q +   +g+    l++  +G+   v+       + ++q H+y + ++                  +  ++l+vt +   Dg v  +ehk+lp+ +vQ+HPe+
  MMETSP1174-20130828|8096_1 613 DDASRTTLKVVLIDHedSFVHTLANYLRQTGAEVLTTRSGEPARQLMdsfeagdkSARPDLVVLSPGPGRPSDFD-LSGTISRCMAMKIPMFGVCLGLQGMVEYFGGTLGVLSYPMHGKPSFVTT------DGSAQDHSYPIFRDLpkefevaryhslhglpeTMPDDLRVTAR-TADGVVMAIEHKSLPLAAVQFHPES 804
                 33334447888888733466778888888888888887777776665111111114568**************96.67889999999*******************************9888873......4478999999887776677778888888766555567777765.57**********************7 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.006       1.9      65      86 ..     693     714 ..     684     719 .. 0.84
   2 !    8.7   0.0   0.00093      0.29     153     197 ..     772     821 ..     739     822 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.006
   TIGR01855  65 ekvvkkkkpvlgiClGmQllfe 86 
                 ++ ++ k p+ g+ClG+Q ++e
  MMETSP1174-20130828|8096_1 693 SRCMAMKIPMFGVCLGLQGMVE 714
                 66788999**********8876 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00093
   TIGR01855 153 eavlakadygekfvaavekdn..ivgvQFHPEk...SgktGlkllknfle 197
                 +++  +a      v a+e++   +++vQFHPE      ++Glk+l+n l+
  MMETSP1174-20130828|8096_1 772 DDLRVTARTADGVVMAIEHKSlpLAAVQFHPESiltQPNYGLKILENCLD 821
                 5555556666666677777652268*******73325689******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.84u 0.22s 00:00:01.06 Elapsed: 00:00:00.51
# Mc/sec: 2142.88
//
Query:       MMETSP1174-20130828|8102_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1174-20130828|8103_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 1842.77
//
Query:       MMETSP1174-20130828|8105_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1622.50
//
Query:       MMETSP1174-20130828|8110_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|8111_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 278.64
//
Query:       MMETSP1174-20130828|8112_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|8117_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|8114_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 970.30
//
Query:       MMETSP1174-20130828|8115_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 238.43
//
Query:       MMETSP1174-20130828|8118_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|8119_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.017   11.4   0.0    1.2  1  TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU


Domain annotation for each model (and alignments):
>> TIGR03368  cellulose_yhjU: cellulose synthase operon protein YhjU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-06     0.017      96     188 ..      70     170 ..      66     178 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.2e-06
   TIGR03368  96 elllalvvvlvaylllnrwlRvtvlvlaalial........slwqalspalatvaanaaataeeagaaataepedanldaalnaFfaqeakrkvaFpaela 188
                 +++ a   v++ yl++n+w  v+v++l   ++l        +lw +l   +++   + ++ +++ +  + +++++ + ++  ++   +e++++++ +++ +
  MMETSP1174-20130828|8119_1  70 KVIKATWSVILQYLMFNNWATVGVFILCGAMCLvlggftayHLWLTLRNVTTNESYKWSELKRAIQYYHKEQQRKREEEEGAEEAADEEHQQRSTDGTNEQ 170
                 67889999*******************98888867887777666666655554444444444444444444444444444444444444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 680.79
//
Query:       MMETSP1174-20130828|8123_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-08   29.6   0.1    1.4e-07   29.0   0.1    1.4  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    5.8e-05   20.5   0.0    7.4e-05   20.1   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      6e-05   20.6   0.0     0.0001   19.9   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00017   18.6   0.0    0.00024   18.1   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00025   19.2   0.0    0.00044   18.4   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00094   16.4   0.0     0.0016   15.6   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
     0.0042   14.3   0.2      0.012   12.8   0.2    1.8  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0055   14.4   0.0     0.0071   14.0   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0096   13.1   0.1      0.017   12.2   0.0    1.5  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.031   11.6   0.0      0.055   10.8   0.0    1.4  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
      0.034   11.8   0.0      0.049   11.3   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   3.8e-10   1.4e-07     154     205 ..      72     123 ..      68     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 3.8e-10
   TIGR00406 154 esldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelN 205
                 +++  ++k+v+++G+G G+++iaa  lga++vva D D   ++ + +N+e N
  MMETSP1174-20130828|8123_1  72 DQVLFQGKRVVELGTGPGLVAIAASILGASEVVATDGDEELLKLTERNIENN 123
                 5566689*****************************************9988 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     2e-07   7.4e-05      90     137 ..      79     125 ..      64     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2e-07
   TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlgl 137
                  +v++lgtG G +a+a a+ l   +v+a+D +ee lk++++N++++  
  MMETSP1174-20130828|8123_1  79 KRVVELGTGPGLVAIA-ASILGASEVVATDGDEELLKLTERNIENNLS 125
                 58*************9.677899********************99764 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.7e-07    0.0001      17      63 ..      75     122 ..      62     129 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.7e-07
   TIGR00537  17 elknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenakl 63 
                   ++++v+e+G+G Glvai+++  g+  +vatd +    kl+++n   
  MMETSP1174-20130828|8123_1  75 LFQGKRVVELGTGPGLVAIAASILGAsEVVATDGDEELLKLTERNIEN 122
                 56899******************99989*****999999999997654 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.4e-07   0.00024     116     161 ..      79     123 ..      61     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.4e-07
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaekl 161
                 k++++lgtG G +a+a +   +  ev a D  ++ l++ e+N+e++
  MMETSP1174-20130828|8123_1  79 KRVVELGTGPGLVAIAASILGA-SEVVATDGDEELLKLTERNIENN 123
                 79**************777666.9*******************987 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06   0.00044      19      66 ..      77     123 ..      70     130 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
   TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf 66 
                 +g+++++ G G G v+i a+ +++  +v+a + +ee l+l+e+N++++
  MMETSP1174-20130828|8123_1  77 QGKRVVELGTGPGLVAIAAS-ILGASEVVATDGDEELLKLTERNIENN 123
                 5889*************776.566679*****************9986 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.3e-06    0.0016     121     167 ..      77     122 ..      42     131 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.3e-06
   TIGR03533 121 evkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeeniee 167
                 + krv++l tG G +aiaa +    +ev a+D  e+ L+++e+nie+
  MMETSP1174-20130828|8123_1  77 QGKRVVELGTGPGLVAIAA-SILGASEVVATDGDEELLKLTERNIEN 122
                 5589************975.678999*******************97 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   3.3e-05     0.012      50     100 ..      71     124 ..      63     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.3e-05
   TIGR02021  50 kd..slkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraeked 100
                  d  + +Gk+v++ G G Gl++i     Ga +v+a D  e+l++l++++ e++ 
  MMETSP1174-20130828|8123_1  71 RDqvLFQGKRVVELGTGPGLVAIAASILGAsEVVATDGDEELLKLTERNIENNL 124
                 4445689*******************999846**************99887764 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.9e-05    0.0071      27     139 ..      69     199 ..      62     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
   TIGR02072  27 lkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls................nvqficgdieklplekksfDlivS..nlalQWlddlsevlaelarvlkpgGllafstfgket 139
                 l   +  f+ ++v ++G G+G l +  ++ + ++e++a+D  ee l+  +++++                + + + gd+  ++  ++ fD++ +  ++a+   d ++ ++a+l  +++ + ++++s    ++
  MMETSP1174-20130828|8123_1  69 LSRDQvLFQGKRVVELGTGPG-LVAIAASILGASEVVATDGDEELLKLTERNIEnnlsrilgpsslsrcrTSKLLWGDAAAVSALNPPFDVVLAadCAAVVYEDAFRDLVASLVALSHADSIVLLSYQRRHQ 199
                 55555578999**********.6667777888888**************999999999***********9999******************99844688999999999999999999999999999766655 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.7e-05     0.017      43      94 ..      71     123 ..      62     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.7e-05
   TIGR01983  43 knekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkd 94 
                 +++  ++g++v+++G+G Gl++ + + lga+ v++ D  eel++  +   +++
  MMETSP1174-20130828|8123_1  71 RDQVLFQGKRVVELGTGPGLVAIAASILGASeVVATDGDEELLKLTERNIENN 123
                 4556689**********************999*********999887665544 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015     0.055      13      64 ..      58     107 ..      54     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   TIGR00438  13 rsrasfkllqlnekfklikkGklvldlGaaPGGWsqvavekvgekGlviavd 64 
                 +s   f l ++  +++++ +Gk+v++lG+ PG    +a++++g    v+a d
  MMETSP1174-20130828|8123_1  58 KSFEGFVLSDFLSRDQVLFQGKRVVELGTGPG-LVAIAASILGA-SEVVATD 107
                 66667888999999*****************8.55667777776.6788877 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013     0.049      75     125 ..      75     124 ..      64     176 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
   TIGR00080  75 lkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkk.L 125
                 l +g++v+e+GtG G   a+ a+++g    vv+ +  eeL + +er++ + L
  MMETSP1174-20130828|8123_1  75 LFQGKRVVELGTGPGL-VAIAASILGA-SEVVATDGDEELLKLTERNIENnL 124
                 67899**********6.5788999999.89999**************98752 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1027.04
//
Query:       MMETSP1174-20130828|8129_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|8127_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 765.54
//
Query:       MMETSP1174-20130828|8128_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0005   15.7   1.4     0.0005   15.7   1.0    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0061   14.6   6.7        0.3    9.1   1.1    2.4  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
  ------ inclusion threshold ------
       0.12    7.8  15.0     0.0041   12.6   1.6    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.99    7.4  12.1        1.1    7.2   1.2    2.4  2  TIGR00293 TIGR00293: prefoldin, alpha subunit
        1.6    5.7   6.9       0.77    6.7   0.2    2.1  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.0     6e-07    0.0005     388     845 ..      76     156 ..      64     166 .. 0.28
   2 !    4.4   1.5    0.0017       1.4     422     741 ..     392     460 ..     371     482 .. 0.36

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6e-07
   TIGR02168 388 vaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleel 845
                 +                                                                                                                                                                                                                                                                                                                                                                                         +e+++ l++a+++lk  +e++++lea++++lk+e+++ ++ ++e+e+ +++  +++  +++ ++ l++e ++++kel +l
  MMETSP1174-20130828|8128_1  76 L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEANQTLQDANSRLKGINEKVAALEAKLQKLKDEFDEATRIMKEAEEVVSKGMTKLGMATRLMSALSSEDKRWNKELGNL 156
                 1.........................................................................................................................................................................................................................................................................................................................................................................................12222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0017
   TIGR02168 422 eieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerle 741
                 e++el +++++ + ++kel+ e+  + ++ +   +e+++l+e le++++   e++++l+                                                                                                                                                                                                                                                           + +k  ++++
  MMETSP1174-20130828|8128_1 392 ERQELIQEQNACTVKIKELEDEILAKLAAAQGDITEDHELIEGLENAKKMAVEISKKLD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QGRKTSKQIN 460
                 22222222222222222222222222222222222222222222222222222222222...........................................................................................................................................................................................................................................................2222222222 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.2   0.00072      0.59     103     156 ..      70     126 ..      38     157 .. 0.69
   2 !    9.1   1.1   0.00037       0.3      99     157 ..     386     444 ..     376     448 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00072
   TIGR02894 103 rkekeklkeeleslqkrneeLe...keleklkkkksvieedyetlikimdrarklav 156
                 + +++ l e +++lq  n +L+   ++++ l+ k + ++++++   +im+ a ++++
  MMETSP1174-20130828|8128_1  70 EPKRKALAEANQTLQDANSRLKginEKVAALEAKLQKLKDEFDEATRIMKEAEEVVS 126
                 334445555555555555444311155566667777777777777777777766655 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00037
   TIGR02894  99 aeklrkekeklkeeleslqkrneeLeke.leklkkkksvieedyetlikimdrarklavv 157
                   +l  e+++l +e+++   +++eLe e l+kl   +  i ed+e li+ ++ a+k+av+
  MMETSP1174-20130828|8128_1 386 RPDLAAERQELIQEQNACTVKIKELEDEiLAKLAAAQGDITEDHE-LIEGLENAKKMAVE 444
                 456889********************994589***********86.99*********986 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.6     5e-06    0.0041     274     357 ..      75     157 ..      64     164 .. 0.39
   2 ?    0.7   3.6     0.021        17     405     467 ..     389     451 ..     373     476 .. 0.29

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5e-06
   TIGR02169 274 kleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklk 357
                  l+e+n+ +++ ++ +   + ek++ l+a+++kl+++ +e+ + +++aee + k   ++    + + +l+ e ++++ke  +lk
  MMETSP1174-20130828|8128_1  75 ALAEANQTLQD-ANSRLKGINEKVAALEAKLQKLKDEFDEATRIMKEAEEVVSKGMTKLGMATRLMSALSSEDKRWNKELGNLK 157
                 22222222222.222222344444444444444444444444444444444444444444444444444444444444333333 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.021
   TIGR02169 405 lkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlek 467
                 l  e++ l++e++  + +++el+ e+ ++ ++ +   +e +el e +++a++ + +++++l++
  MMETSP1174-20130828|8128_1 389 LAAERQELIQEQNACTVKIKELEDEILAKLAAAQGDITEDHELIEGLENAKKMAVEISKKLDQ 451
                 111111122222222222222221111111111111111111111111111111111111111 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.2    0.0014       1.1      81     126 ..      76     121 ..      59     127 .. 0.78
   2 ?    5.0   2.1    0.0065       5.4       2      57 ..     394     448 ..     393     449 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0014
   TIGR00293  81 ekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqk 126
                   +++++++  +++ + +++++  l+++lq+l++e +e  + ++++
  MMETSP1174-20130828|8128_1  76 LAEANQTLQDANSRLKGINEKVAALEAKLQKLKDEFDEATRIMKEA 121
                 5678888889999999999999999999999999887776666554 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0065
   TIGR00293   2 qqlaaelqqlqeevealqaei.aalraliaeleeaietleslkkaegkevLVpvgag 57 
                 q+l++e++++  ++  l++ei a+l a++  ++e  e +e l+ a  k++ V ++++
  MMETSP1174-20130828|8128_1 394 QELIQEQNACTVKIKELEDEIlAKLAAAQGDITEDHELIEGLENA--KKMAVEISKK 448
                 79****************997468********************9..9999999876 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2   0.00094      0.77      59     131 ..      64     135 ..      59     165 .. 0.66
   2 ?    1.8   1.0      0.03        25      74     145 ..     385     456 ..     378     473 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00094
   TIGR03752  59 dtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleel 131
                 d + t+  + k+l +  ++l++ N++lk  ne++ + e ++ ++++++++ +++ +k+++e +++ ++kl  +
  MMETSP1174-20130828|8128_1  64 DVVVTVEPKRKALAEANQTLQDANSRLKGINEKVAALEAKL-QKLKDEFDEATRIMKEAEEVVSKGMTKLGMA 135
                 55667777777777777777777877777777777776666.4567777777766666666665555544433 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.03
   TIGR03752  74 elaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle.dvaae 145
                 e  +l +e ++l +e++  + + ++++++i  +l+a++ ++++++e  +   ++++++  e +kkl+ + +++
  MMETSP1174-20130828|8128_1 385 ERPDLAAERQELIQEQNACTVKIKELEDEILAKLAAAQGDITEDHELIEG-LENAKKMAVEISKKLDqGRKTS 456
                 55567788899999999999999999999999999999999988876554.3445555556666665322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1709.26
//
Query:       MMETSP1174-20130828|8131_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-27   93.2   0.0    2.2e-24   83.9   0.0    2.1  2  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    9.4e-07   26.6   0.0    1.3e-06   26.1   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
     0.0015   16.1   0.0     0.0026   15.4   0.0    1.3  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
     0.0032   14.8   0.0     0.0047   14.2   0.0    1.2  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   2.2e-27   2.2e-24       3     142 ..      48     188 ..      46     199 .. 0.94
   2 !    7.4   0.0   0.00062      0.64     145     182 ..     219     256 ..     215     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 2.2e-27
   TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvdeeg.pklyslDplGsiiedkytatGsGspvalgvLed 142
                 T++ +  +   +lAad+r+s +  ++s+n  ++ ++ + + + + G  +d+ +lv++l++ +klye +++++ s++a+++lls  l++++ +pf+v++++ Gvde+g  ++y  D +Gs+   + + +Gs +p+ l +L++
  MMETSP1174-20130828|8131_1  48 TVIAVAGDGFAILAADTRLSKDYSILSRNSSRIWELVPGAWIGVGGCNADVLALVNTLQMTIKLYEWEQGRPPSISAISQLLSTTLYHRRTMPFYVSCVLTGVDESGqGAVYAYDSVGSFERVRVACVGSAQPIILPILDQ 188
                 66666667778**********************************************************************************************65379***************************9997 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00062
   TIGR03634 145 eedlsleeakklavkaiksaieRDvasGdgidvvvitk 182
                 ++++++ +a + +  a  +a eRD+  Gd +d+v i +
  MMETSP1174-20130828|8131_1 219 KTNITCLQALQYVKSAAAAADERDIRFGDWLDIVSIAT 256
                 67899999**************************9975 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.3e-09   1.3e-06       4     144 ..      45     180 ..      42     201 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.3e-09
   TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsv 144
                 +g t++a+a  g  +la d r ++   i sr+  ++++    + +g+ G  +  + lv+  q+ ++ ye  +G+p s+++ ++ l++ + +  ++    + v  +l+G d+ +++G +++yd vg + e+ + ++vGs   
  MMETSP1174-20130828|8131_1  45 NGGTVIAVAGDGFAILAADTRLSKDYSILSRNSSRIWELVPGAWIGVGGCNADVLALVNTLQMTIKLYEWEQGRPPSISAISQLLSTTLYHRRTMP---FYVSCVLTGVDE-SGQGAVYAYDSVG-SFERVRVACVGSAQP 180
                 689************************************************************************************999888875...678899*****7.579*******997.579999999999765 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-06    0.0026       2      67 ..      48     112 ..      47     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.5e-06
   TIGR03692   2 tilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleey 67 
                 t++av  +g +++a+d +++ + ++l +n+ ++ +l+ g  + G  G  ad l+L++ ++  ++ y
  MMETSP1174-20130828|8131_1  48 TVIAVAGDGFAILAADTRLSKDYSILSRNSSRIWELVPGAWI-GVGGCNADVLALVNTLQMTIKLY 112
                 99************************************9865.9**************99888766 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-06    0.0047      31     173 ..      48     188 ..      43     200 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.6e-06
   TIGR03633  31 tavGiktkegvvlivdkritskl.leaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellek 173
                 t + +  +   +l++d r  +   + +++  +i+++     +   G  aD  +l+++ +++ + +    + p +++++++ ++ +   y  +    Pf v+ +++Gvd++ +  ++  d  G +   +++++G+ +  +l +l++
  MMETSP1174-20130828|8131_1  48 TVIAVAGDGFAILAADTRLSKDYsILSRNSSRIWELVPGAWIGVGGCNADVLALVNTLQMTIKLYEWEQGRPPSISAISQLLSTTL--Y--HRRTMPFYVSCVLTGVDESgQGAVYAYDSVGSFERVRVACVGSAQPIILPILDQ 188
                 555555555567788887765432445556788888888888899999**********9999999999******999998887654..3..44578************986789********************99999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|8137_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|8136_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-05   20.7   0.1     0.0025   15.4   0.1    2.1  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00028   16.7   0.0    0.00031   16.6   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00072   17.0   0.3      0.007   13.8   0.0    1.9  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00088   15.4   0.3      0.001   15.2   0.2    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.017   11.6   0.0       0.02   11.3   0.0    1.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
       0.03   12.0   0.0      0.069   10.8   0.0    1.5  1  TIGR02996 rpt_mate_G_obs: repeat-companion domain TIGR02996


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.6e-06    0.0025      37     117 ..       1      81 [.       1      85 [. 0.87
   2 !   10.2   0.1   0.00015       0.1      51      89 ..      49      87 ..      45     122 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.6e-06
   TIGR02552  37 AeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 A+++Fq  + ++p +   w  L+a+l    + eeA+ aY + + l++  +r  + +++++ +l ++  + ++   a+e+  
  MMETSP1174-20130828|8136_1   1 AVEAFQKAVDANPDDNTLWNKLGATLANSARSEEALPAYHRSLELKPLYARGWLNLGISHANLMNYSASVRCYLYALELNP 81 
                 778899999999999999*****************************9999999999999999999888888777777655 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00015
   TIGR02552 51 eakywlgLaaclqalkeyeeAiaaYalaaaldlddprpv 89
                 a+ wl L+ ++  l +y+  + +Y +a+ l+++++ + 
  MMETSP1174-20130828|8136_1 49 YARGWLNLGISHANLMNYSASVRCYLYALELNPEAHHVW 87
                56779***************************9988765 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.5e-07   0.00031     452     532 ..       3      83 ..       1     101 [. 0.68

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.5e-07
   TIGR02917 452 aaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpkn 532
                  a +k    +pd+  l+n lga++ ++  +++A  a+  +L+++p ++    nL   +++  n  +++  + ++l  +p+ 
  MMETSP1174-20130828|8136_1   3 EAFQKAVDANPDDNTLWNKLGATLANSARSEEALPAYHRSLELKPLYARGWLNLGISHANLMNYSASVRCYLYALELNPEA 83 
                 444555556667777777777777777777777777777777777777777777777777777777777777777666654 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     1e-05     0.007      50      96 ..       1      47 [.       1      57 [. 0.89
   2 !    9.9   0.1   0.00015       0.1      38     103 ..      23      88 ..      21     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1e-05
   TIGR02521 50 AkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkp 96
                A e+ +kA+ ++p+d+  ++ l+  + +  + e+A  +++++l+lkp
  MMETSP1174-20130828|8136_1  1 AVEAFQKAVDANPDDNTLWNKLGATLANSARSEEALPAYHRSLELKP 47
                6678899************************************9998 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00015
   TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlN 103
                 +++  ++   e+A  +    lel+p +a+ +l l++   +l++ ++  + +  Al+l+p+  +v N
  MMETSP1174-20130828|8136_1  23 GATLANSARSEEALPAYHRSLELKPLYARGWLNLGISHANLMNYSASVRCYLYALELNPEAHHVWN 88 
                 5555667778999999999*****************************************999988 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.5e-06     0.001      38     144 ..       1     108 [.       1     119 [. 0.94

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-06
   TIGR03939  38 alslLqklyrktkldkkvldDllavlsWagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalk 144
                 a++ +qk ++++++d+ + + l a l+   +++e++ +y r  +l++l ar++ +l+ +  n+ +++ ++  y  +l+ +P+   ++  + ++l+++++++  + a++
  MMETSP1174-20130828|8136_1   1 AVEAFQKAVDANPDDNTLWNKLGATLANSARSEEALPAYHRSlELKPLYARGWLNLGISHANLMNYSASVRCYLYALELNPEAHHVWNFVRMVLTNMERYDLVQLAAA 108
                 578899999******************************9999********************************************************999887765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.9e-05      0.02     385     484 ..       2     101 ..       1     107 [. 0.94

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.9e-05
   TIGR00990 385 eedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfd 484
                  e f+ka++ +++d  ++   +         +ea   y++s +l p +   ++ l++    l ++  s   +  a    pea  v n+   +l++ + +d
  MMETSP1174-20130828|8136_1   2 VEAFQKAVDANPDDNTLWNKLGATLANSARSEEALPAYHRSLELKPLYARGWLNLGISHANLMNYSASVRCYLYALELNPEAHHVWNFVRMVLTNMERYD 101
                 589***************99999888899999**********************************************************9999887765 PP

>> TIGR02996  rpt_mate_G_obs: repeat-companion domain TIGR02996
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001     0.069       3      18 ..       3      18 ..       2      19 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0001
   TIGR02996  3 aaLlraIlaaPdddTp 18
                +a+ +a+ a+Pdd+T+
  MMETSP1174-20130828|8136_1  3 EAFQKAVDANPDDNTL 18
                79*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 450.12
//
Query:       MMETSP1174-20130828|8139_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 893.13
//
Query:       MMETSP1174-20130828|8141_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-17   59.9   0.2      3e-17   59.6   0.1    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.9e-13   47.3   0.2    6.4e-13   46.6   0.2    1.3  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    5.3e-08   30.5   0.0    0.00019   19.0   0.0    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    8.8e-07   25.3   0.2    9.9e-07   25.1   0.2    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
      6e-05   21.5   0.0     0.0028   16.1   0.0    2.4  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0015   15.1   0.0      0.002   14.6   0.0    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0043   14.4   0.1     0.0061   13.9   0.1    1.3  1  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   5.2e-20     3e-17     376     509 ..       2     135 ..       1     151 [. 0.92

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 5.2e-20
   TIGR02917 376 kgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArld 509
                 +gd++ A++   +  ++dP +a+ + +lg + L ++ + +ai + + A+   p+ ++a+  L+++  +sg++d a+  ++  +  qp+n   +n lg+ +++++ + +A  af+ A  ++p++++A+ nL r+ 
  MMETSP1174-20130828|8141_1   2 AGDTNGAIAAYVRCRKIDPTDAKTHNSLGTLLLRKNMVDSAILSYRSAIMYSPNYTKARSNLAMALVKSGQLDEAVTQLQYVIRTQPENEVAHNNLGISLIKSGRKTEAIVAFRRAIDLNPNYVKARENLQRIF 135
                 5888999999999999*****************************************************************************************************************99984 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.2   1.1e-15   6.4e-13      59     184 ..      17     140 ..       1     148 [. 0.68

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.1e-15
   TIGR02521  59 eldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgq 184
                 ++dp da+++++l+ ++ +    + A  s+r A+  +pn ++++ N  + L + ++ +eA +q++  i+++  ++ + + +N+g+ + k g+  +a  +++ra++++p++ ++  +l ++ +++++
  MMETSP1174-20130828|8141_1  17 KIDPTDAKTHNSLGTLLLRKNMVDSAILSYRSAIMYSPNYTKARSNLAMALVKSGQLDEAVTQLQYVIRTQ--PENEVAHNNLGISLIKSGRKTEAIVAFRRAIDLNPNYVKARENLQRIFSENRK 140
                 66777777777777777777777777777777777777777777777777777777777777777777666..56666677777777777777777777777777777777777777766666554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00016     0.092      67     117 ..       4      54 ..       1      60 [. 0.86
   2 !   19.0   0.0   3.2e-07   0.00019      46     118 ..      51     123 ..      47     138 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
   TIGR02552  67 eyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 + ++AiaaY ++ ++d+ d++ +  ++  ll ++   +A    + ai+ + 
  MMETSP1174-20130828|8141_1   4 DTNGAIAAYVRCRKIDPTDAKTHNSLGTLLLRKNMVDSAILSYRSAIMYSP 54 
                 6789*******************9999999999999999988888887765 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 3.2e-07
   TIGR02552  46 aldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                 ++ p+  k    La++l + ++ +eA+ + ++    ++++ +++  ++++l++ g+k eA  a+++ai++  +
  MMETSP1174-20130828|8141_1  51 MYSPNYTKARSNLAMALVKSGQLDEAVTQLQYVIRTQPENEVAHNNLGISLIKSGRKTEAIVAFRRAIDLNPN 123
                 5666666666677777778888888888888888888888888888888888888888888888877776554 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   1.7e-09   9.9e-07      66     203 ..       2     144 ..       1     178 [. 0.86

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.7e-09
   TIGR03939  66 agedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt....rlga 203
                 ag+ + +i++y r+ ++ ++ a++ ++l+  + ++   d+A+  yr+++  +P+  ++++ la++l+  g+ +eA  +l+ +  ++p+++   ++l+  l +++++++a+ a  +a++l+P+  ++  +l +i +    ++++
  MMETSP1174-20130828|8141_1   2 AGDTNGAIAAYVRCrKIDPTDAKTHNSLGTLLLRKNMVDSAILSYRSAIMYSPNYTKARSNLAMALVKSGQLDEAVTQLQYVIRTQPENEVAHNNLGISLIKSGRKTEAIVAFRRAIDLNPNYVKARENLQRIFSenrkQVND 144
                 79999*********99****************************************************************9999999888888889999999********************999998888887755544444 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.8e-06    0.0028      39     113 ..      23      94 ..       3      96 .. 0.88
   2 ?    3.4   0.0     0.041        24      44      78 ..      96     130 ..      92     146 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.8e-06
   TIGR02795  39 pnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaak 113
                 +  +  lG +l++k+ +++A+ ++++++   p+ +ka     +l+++l+++gq ++A + lq vi++ P+++ a+
  MMETSP1174-20130828|8141_1  23 AKTHNSLGTLLLRKNMVDSAILSYRSAIMYSPNYTKARS---NLAMALVKSGQLDEAVTQLQYVIRTQPENEVAH 94 
                 5556679**********************9999988876...579**********************99988765 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.041
   TIGR02795  44 wlGealyakkkykdAakaflevvkkypksekapda 78 
                  lG +l++ +  ++A+ af+ ++  +p+  ka ++
  MMETSP1174-20130828|8141_1  96 NLGISLIKSGRKTEAIVAFRRAIDLNPNYVKAREN 130
                 45556666666666666666666666666555555 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.4e-06     0.002     451     572 ..       7     121 ..       2     160 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-06
   TIGR00990 451 ssealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelkpisvnvlPlinkalalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklferaaela 572
                  + a + r+ k  p   + +n  + lll kn  d a+  +  ai    +      n+      a+al++   +  ea   l+  ++  Pe ++a   l   l++ ++ +ea+  f ra +l 
  MMETSP1174-20130828|8141_1   7 GAIAAYVRCRKIDPTDAKTHNSLGTLLLRKNMVDSAILSYRSAIMYSPNYTKARSNL------AMALVKSG-QLDEAVTQLQYVIRTQPENEVAHNNLGISLIKSGRKTEAIVAFRRAIDLN 121
                 5678899999999999999*************************9887766666655......55555543.357888888999999************99*****************9996 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     1e-05    0.0061      39     120 ..      63     141 ..      36     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-05
   TIGR03302  39 eaeeelekgnykeAikkfeelesrypfseyaeqaqLdlayayYksgeyeeAlaaadrFiklyPnhedvdyalYliglsnykq 120
                  a++ +++g+ +eA+++++ + ++ p +e+a++   +l+ +  ksg+ +eA+ a++r i+l+Pn  ++   l +i   n kq
  MMETSP1174-20130828|8141_1  63 LAMALVKSGQLDEAVTQLQYVIRTQPENEVAHN---NLGISLIKSGRKTEAIVAFRRAIDLNPNYVKARENLQRIFSENRKQ 141
                 5788899*********************99887...7899999********************9887776666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 1047.11
//
Query:       MMETSP1174-20130828|8143_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 547.51
//
Query:       MMETSP1174-20130828|8146_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|8145_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 873.86
//
Query:       MMETSP1174-20130828|8148_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1174-20130828|8150_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 453.04
//
Query:       MMETSP1174-20130828|8147_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 964.25
//
Query:       MMETSP1174-20130828|8152_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|8153_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1174-20130828|8157_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|8151_1  [L=1497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-234  777.1   0.0   4.3e-233  773.9   0.0    1.9  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    2.9e-62  208.5  10.5    8.2e-16   55.3   0.3    8.1  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    5.9e-32  109.0   6.1    8.5e-12   42.5   0.1    4.5  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    8.5e-30  101.0   1.8    1.7e-10   37.2   0.0    5.0  4  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    5.6e-29   98.7   6.5      3e-07   26.8   0.0    5.1  5  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    4.7e-28   95.3   3.2    3.8e-09   32.8   0.0    5.0  5  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    6.5e-27   91.3   0.4    6.4e-10   35.1   0.0    4.7  5  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    2.9e-26   90.2   3.7    8.1e-09   32.7   0.0    4.4  4  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      5e-24   82.3   7.0    1.2e-05   21.5   0.0    5.1  4  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.7e-22   77.0   6.2      2e-06   24.6   0.1    4.2  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    4.8e-16   55.5   0.1    5.1e-10   35.5   0.0    4.7  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    1.5e-14   50.9   3.4    2.1e-08   30.6   0.1    3.5  4  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.9e-13   47.2  10.0    3.8e-06   23.1   0.0    3.8  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
      1e-12   44.6   2.8    4.2e-05   19.4   0.0    3.5  4  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    0.00012   20.0   0.1      0.012   13.5   0.0    2.8  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
     0.0012   16.7   0.0     0.0033   15.2   0.0    1.8  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
     0.0053   14.2   0.1      0.024   12.0   0.1    2.0  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0063   14.0   0.1      0.027   11.9   0.0    2.1  3  TIGR00338 serB: phosphoserine phosphatase SerB
      0.007   14.3   0.0      0.014   13.3   0.0    1.5  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
  ------ inclusion threshold ------
      0.012   13.1   0.0       0.03   11.7   0.0    1.7  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily


Domain annotation for each model (and alignments):
>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.9   0.0  2.1e-235  4.3e-233      22    1047 ..     115    1407 ..     102    1416 .. 0.89

  Alignments for each domain:
  == domain 1    score: 773.9 bits;  conditional E-value: 2.1e-235
   TIGR01657   22 vlvltlglvlLlltwkpklkvkltlvkvskedeetvvivtetklslsdeivelsrkslskdl..elesaveaseeeiffefkkqkksy..eekeqkifskleelvkeksegdylkaagesnGLtkgeiakrkelyGkneieikvksfleLlveevlkPfyvfqvfsvilWlldeyyyyallilvlsvlsivlsvkeirkqlkelrdmvaksqsveViRekkeetiasdelvpgDivlisrl..............................eekllpcDavLlegscivnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdeg...........dtkvlaiVvrTGFstskGqLvrsilypkprvfkfykdslkfilflavlaligfiyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaeeflkevteds..sekksetlkalatchsltkled.klvGDpldlkmleavgwtlee...........edesaleesilavvr.............................tedkt.kelsiirrfeFssalkrmsvivkteeerkke..............llafvKGaPEtiaellsketvpsdykevlksytreGfRvlAlaskeLpkltlskaqdlsRdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeepekgksaq.ikfeskde...........kiastkveqpvkekkdslesllasryslalsG....kalavllekskellkklllkvkVfARvaPeqKeelvetlkkl..dytvlmcGDGaNDcgALkqAdvGisLsea.........................................................................................................................................eAsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpssnllsvylllsvllqfvlvilslvllvfevkkqpwykeeev............................velekenakslentvvfivslfqylivaivnskGkpfreplyknkpfvvsllvllaillvllleesselnellklvllpqe 1047
                    v + +l+ Ll++w + +k+   ++++++ +e  +v+v++   +++ ei ++ + +++  +   ++  +++ ++++  +++  ++    +  e+++ +k+  +     + + ++   +s+GL+  ++++r  lyGkn + ++ +++++L++e+ l P+ +fqvf+ ilW+ldey+ y++++l+ +v+++++ +++++++ ++l +m  k++  +V+R++k+ ++ +++l+pgD+++++r                                  ++pcD+++l+gs++vnE+ ltGEsvp++K +++ + +++++l+++  ++ h+Lf GT v+ ++p+ +           d+++l +V+rTGFs+s+G+L++ i ++++ v++++k++ + +l+l+++a++++ yvl +++ ++ r+ ++l+l+++ iit+vvP +LP++++++vn+al +L k+gifc+eP+r+++aGki+ + FDKTGTLT d+l+ +gv   +  +    +v  +   + +  e + +l++chsl+++e+  +vGDp+++++l+ v+w++++            +e+alee+ +av                                 d++  +++i++r +F+s+l+rmsv+++++ +++                +  fvKG+PE+i+ell +e +p+ y++ +  +++eG+RvlAla+k+ +      +++  R++vEsnl+f+G++ +++k + d+  vi++L+e+ ++v+m tGD +lTa  Va++vg+ ++        + +++  ++a  ++ ++ de             a++++  p++ +   + ++la++++l        +a + l  ++ + l + +  ++V+AR +P+ K++++++l++     +vlmcGDG ND+gALkqAdvG++L+                                                                                                                                           +As aapFtS+++s+scV+++ir+GR++L  +lq  ++++l ++i++++++ L l+g + ++ Q ++ ++ li+v +l++s++k +++++  rp  +l+  +++ls+++q +++++ + ++v+++ + +  +  +                             ++ +  ++++l ntvvf+v   q ++v+ vn+kG+p+++ l +n p+++s+ +  a + +++   s+eln+l++l + p++
  MMETSP1174-20130828|8151_1  115 FAVTLTALFFLLCRWLVWFKALTLFAPATEIKEGSFVLVQPLSHHGKAEITPVVKSKQTGMPcfVFQRQKYDLLRPLAHDYADMSEDCvgKGAENGAVRKVTCP-----IDYPVDYYAKSQGLSSEDVQQRIDLYGKNIVRVPTPKIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIFTLFSIVMFEATTAFQRLRTFSTLGSMASKPTPLQVYRDGKWSQLTTEDLLPGDLISFTRRapapppgprgkkqritggpdapaankksaqATDAVPCDLIILSGSAVVNEATLTGESVPQMKDALKVDAHEKKSLNVDGAHRVHTLFSGTSVVVASPAAEddntahpvktpDGGCLCLVLRTGFSSSQGELMQMIEFSTQQVSADSKETGLALLVLLCFAIASAGYVLKKGLAKGdRTTHELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGVVNNMPGAVKAAAVRPMVdvNVARAEAALVLGACHSLVHMEGvGVVGDPIEIAALKGVEWSYDAttqvarpgqwnIAEKALEEEEKAVETlgatektakekaqvrvvelqksikvqkqrAADSPvSSVQILQRHHFNSELQRMSVVCSVNWKKEVPssmadadsingserTWCFVKGSPEAIRELLTPELIPAWYDASYGAMAEEGMRVLALAYKPGN-----GLENAPRSQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQTP------KGKTNTTDCALaLERRVDDEgecvgfewvgvLAADKEQRVPFEPG---KLKALAQKHDLVTLEsnweDAAESLGDEAGQRLWEEVGAISVLARCSPQGKAKVIRSLQAAshHNFVLMCGDGGNDVGALKQADVGVALLSGygntnttgaakpedgeaksaedalnaqtkalekrsseamslrktlmnkkqkelmsrqqewlkeemqaraergedtgvfgtiaavktvtqriraemgkenqaisrkhgnvfdssddpkdpqadlmagldesmpivrpgDASKAAPFTSRTPSVSCVVKLIRQGRCTLLSALQQQQIMMLECIISAYALSALSLEGARSSERQ-MMASGWLIMVASLAFSYTKHIEEMHPVRPLRSLFHPAIFLSMMGQAMIHVGCMWYGVKIATEAMGPELLKEvltfhkmakaktlpeqqaadddvwaelwMAWQTPFMPNLLNTVVFLVETSQMIAVLFVNYKGRPWMKGLLENHPLFLSVFLCVAGVAACAWGMSPELNNLIHLAPFPDD 1407
                  45677899*********************************989999999887774333322002233333333333333333322220022222233333333.....334466667777**********************************************************************************************************************9889999*******************9888776789********************************999999************************999999**********************************************************************9998******************************************************************************9999998666666666544677788899************99********************88888888888555555555554444788888999999999999**********9555566**********************98754432111111223334456678******************************************866.....688999**********************************************************99882......223334444440444444447888888887766888889999999...7888888888865331222567777777778888889999*******************8722579***********************************************************************************************************************************************************************************************************************************.8899*****************************************************998776654444445899***********************99999**********************************************************************9999876 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00074      0.15       1      61 [.     290     348 ..     287     354 .. 0.82
   2 !   28.2   0.0   6.6e-10   1.3e-07      62     106 ..     381     429 ..     378     445 .. 0.75
   3 !   50.0   0.8   1.6e-16   3.3e-14     123     234 ..     489     605 ..     472     620 .. 0.74
   4 !   51.8   0.0   4.4e-17   9.1e-15     253     377 ..     730     895 ..     701     901 .. 0.74
   5 !   55.3   0.3     4e-18   8.2e-16     363     411 ..     974    1024 ..     969    1026 .. 0.88
   6 !    6.5   0.0    0.0024       0.5     412     464 ..    1165    1217 ..    1164    1221 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00074
   TIGR01494   1 vililvllfallealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvk 61 
                 ++l+ +++f+++ a+++ ++ ++l s+++  + ++  +++++++++ +++dl +GD+++++
  MMETSP1174-20130828|8151_1 290 FTLFSIVMFEATTAFQRLRTFSTLGSMAS--KPTPLQVYRDGKWSQLTTEDLLPGDLISFT 348
                 47788889999999999999999999998..6677677777789*************9876 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 6.6e-10
   TIGR01494  62 kgekvpaDgvllsgsaevdessLtGEsnpvekk....eavfagtinfeg 106
                 ++++vp+D+++lsgsa+v+e+ LtGEs+p+ k     +a+ +++ n++g
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILSGSAVVNEATLTGESVPQMKDalkvDAHEKKSLNVDG 429
                 5799*************************97751111445555555555 PP

  == domain 3    score: 50.0 bits;  conditional E-value: 1.6e-16
   TIGR01494 123 sektplqrkldklalifllallllallvfllv..lielktflkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvi 234
                  ++    +k++ lal++ll+++++    +l +  +++ +t  +++l+++i++++++P +Lp+ + +a++++  +l+   i+++++ ++  +gk++ +l+DKTGTLT++++  + vv 
  MMETSP1174-20130828|8151_1 489 TQQVSADSKETGLALLVLLCFAIASAGYVLKKglAKGDRTTHELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMkngIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGVVN 605
                 44444466667777444444444444333332112333567899**********************99988777655559*****************************99888775 PP

  == domain 4    score: 51.8 bits;  conditional E-value: 4.4e-17
   TIGR01494 253 kkilkvlefeserkrmsvivkkpkgk....................yvkGapevilervkk......leekleelaseglrtlavaske................ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfarvsPeqKaei 377
                  +il++++f+se +rmsv+++ + +k                    +vkG+pe i e ++       +++ +  +a+eg+r+la+a+k                 +++G++a++++ r+d++ +i++l+++g+kv mlTGD + tA  +ak +g ++r +P+ K++ 
  MMETSP1174-20130828|8151_1 730 VQILQRHHFNSELQRMSVVCSVNWKKevpssmadadsingsertwcFVKGSPEAIRELLTPelipawYDASYGAMAEEGMRVLALAYKPgnglenaprsqvesnlQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVG-LCRQTPKGKTNT 895
                 45777777777777777777643221222222222233333334448999999999999865555558999999999999999999985444444444555555589***********************************************.9********875 PP

  == domain 5    score: 55.3 bits;  conditional E-value: 4e-18
   TIGR01494  363 lglfarvsPeqKaeivellkkkge..vvamiGDGvNDapALkaAdVGiais 411 
                  + ++ar+sP+ Ka+++++l+ + +   v+m+GDG ND++ALk+AdVG+a+ 
  MMETSP1174-20130828|8151_1  974 ISVLARCSPQGKAKVIRSLQAASHhnFVLMCGDGGNDVGALKQADVGVALL 1024
                  6789****************8654238**********************85 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.0024
   TIGR01494  412 AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvls 464 
                  A++aa +    +++s+vv+l+++Gr+t+ +  +  +++++ ++i ++ l+ ls
  MMETSP1174-20130828|8151_1 1165 ASKAAPFTSRTPSVSCVVKLIRQGRCTLLSALQQQQIMMLECIISAYALSALS 1217
                  7788888888999*******************************999988765 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05    0.0024      86     116 ..     383     413 ..     379     417 .. 0.91
   2 !   25.1   1.2     8e-09   1.6e-06     173     269 ..     501     603 ..     483     719 .. 0.82
   3 !   25.1   0.0   8.1e-09   1.7e-06     370     439 ..     828     892 ..     815     899 .. 0.86
   4 !   42.5   0.1   4.2e-14   8.5e-12     418     479 ..     965    1026 ..     960    1035 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-05
   TIGR01525  86 ekipvDGeviegesevDesllTGEslpvekk 116
                 + +p D  +++g++ v+e++lTGEs+p  k 
  MMETSP1174-20130828|8151_1 383 DAVPCDLIILSGSAVVNEATLTGESVPQMKD 413
                 789************************9875 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 8e-09
   TIGR01525 173 fvplvlaialltflvwlalga......lka.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdv 269
                 + +lvl++ +++ +  + l++      +++ e l + v +++  +P  L + + +a+ +a+ +  knGi+  +   +  + k+++ +fDKTGTLT+ +l+ + v
  MMETSP1174-20130828|8151_1 501 LALLVLLCFAIASAGYV-LKKglakgdRTThELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGV 603
                 44444444444444442.333566575223488999999999999****************************************************9988765 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 8.1e-09
   TIGR01525 370 vlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiidevvaellPedK 439
                 + v ++ +++g+ia++ + r+++  +i++L+++g +v +ltGD   +a  vAk++g+     +  +P+ K
  MMETSP1174-20130828|8151_1 828 SQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGL-----CRQTPKGK 892
                 556777799***********************************************7.....44555555 PP

  == domain 4    score: 42.5 bits;  conditional E-value: 4.2e-14
   TIGR01525  418 eavAkelgiidevvaellPedKlakvkklqeeegk.kvamvGDGiNDApALaaAdvGiamgsg 479 
                  +++ +e+g    v a ++P+ K+++++ lq+ +++  v+m+GDG ND  AL++AdvG+a+ sg
  MMETSP1174-20130828|8151_1  965 QRLWEEVGA-ISVLARCSPQGKAKVIRSLQAASHHnFVLMCGDGGNDVGALKQADVGVALLSG 1026
                  677899**5.79******************9966669**********************9765 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.6e-05    0.0053      21     144 ..     229     348 ..     223     354 .. 0.86
   2 !    6.8   3.6    0.0013      0.26     147     391 ..     383     660 ..     360     714 .. 0.62
   3 !   33.1   0.0   1.4e-11   2.9e-09     400     545 ..     727     890 ..     694     902 .. 0.73
   4 !   37.2   0.0   8.1e-13   1.7e-10     543     612 ..     952    1023 ..     938    1040 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.6e-05
   TIGR01522  21 enGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgniddavsitlailivvtvgfvqeyrsekslealnklvpaechliraGkeehvlasklvpGdlvels 144
                 ++Gls s++v++r +l+G+n ++v    + + + +++    p++++ + +a++ +l + ++ ++   ++i++  + +  q  r+  +l +++   p+  ++ r Gk +++ + +l+pGdl+ + 
  MMETSP1174-20130828|8151_1 229 SQGLS-SEDVQQRIDLYGKNIVRVPT--PKIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIFTLFSIVMFEATTAFQRLRTFSTLGSMAS-KPTPLQVYRDGKWSQLTTEDLLPGDLISFT 348
                 67887.789***********999975..456677887779999999999999998888889999988999999888888*********99976.588999********************9885 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0013
   TIGR01522 147 drvpadlriveavdlsidesnltGettpvkksseaiea.....l....aersniaymGtlv................r..eGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlsl...vsfiv..igvivlvGllqG.kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknh...mtvtkiy.tvdklaal.slktvavekilkvgal.cnnakvkneaasllgkptdvaliell 391
                 d vp dl i+      ++e++ltGe+ p  k++  ++a     l    a+r  + + Gt v                +  +G +  +v+ tG  ++ G++++m++   +     q s d+    l+l   + f +   g ++  Gl +G +   e++   v +  + +p  lp+ +++++   ++ + k+         v   G +     dktGtlt+++   m v +    + k+aa+  +  v+v+++  +  l   ++ v+ e   ++g+p+++a ++ +
  MMETSP1174-20130828|8151_1 383 DAVPCDLIILSGS-AVVNEATLTGESVPQMKDALKVDAhekksLnvdgAHRVHTLFSGTSVvvaspaaeddntahpvKtpDGGCLCLVLRTGFSSSQGELMQMIEFSTQ-----QVSADSKETGLALlvlLCFAIasAGYVLKKGLAKGdRTTHELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQlvpMGVVNNMpGAVKAAAVrPMVDVNVARAEAALVLgACHSLVHMEGVGVVGDPIEIAALKGV 660
                 6677776666544.34667777777777666654433211111222334566666666654222222221111111111134455689999999999998888765433.....4555554444444000444431145677789999956788999999****************9999999999999888888888999******************98333444433313333333313444555554433333223678888989999999999876543 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 1.4e-11
   TIGR01522 400 retvkrvaevpfsserkymavkvltdskkiv.fvkGateqvleyctsylkkdGk....teklteeq.kekiqeeaaemaseGlrvlalaskt............ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavkssk 545
                   +v+  +   f+se + m+v +  + kk v +     + +  +  +++  +G     +e lt e   + ++     ma+eG+rvlala+k+            e++l faG++ +n   r+d +  ++ l ++G +v m+tGd+  ta  +a+ +Gl  +++k
  MMETSP1174-20130828|8151_1 727 VSSVQILQRHHFNSELQRMSVVCSVNWKKEVpSSMADADSINGSERTWCFVKGSpeaiRELLTPELiPAWYDASYGAMAEEGMRVLALAYKPgnglenaprsqvESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQTPK 890
                 344556677789***99999999887665541555556778778888888888722223344544414567788899************8742222222222226799**************************************************988765 PP

  == domain 4    score: 37.2 bits;  conditional E-value: 8.1e-13
   TIGR01522  543 sskeGekldelddqqlsevvdkvavfaraspehklkivkalqk..rGdvvamtGdGvndapalkladiGvam 612 
                   ++  e l +   q+l e v  ++v+ar+sp+ k k++++lq   + + v m GdG nd  alk ad+Gva+
  MMETSP1174-20130828|8151_1  952 WEDAAESLGDEAGQRLWEEVGAISVLARCSPQGKAKVIRSLQAasHHNFVLMCGDGGNDVGALKQADVGVAL 1023
                  556677888888999**************************97225689*********************97 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.6e-09   3.2e-07       1     118 [.     231     347 ..     231     353 .. 0.82
   2 !    7.8   0.1   0.00085      0.17     120     153 ..     381     413 ..     378     423 .. 0.88
   3 !    9.2   0.8   0.00032     0.065     155     303 ..     451     599 ..     417     613 .. 0.76
   4 !   26.8   0.0   1.5e-09     3e-07     363     482 ..     758     885 ..     692     898 .. 0.79
   5 !   26.2   0.0   2.2e-09   4.6e-07     504     559 ..     966    1023 ..     937    1037 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.6e-09
   TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllkFlsflwnPlswvleiAaiiaialenweDfv.iilallllnatigfieeskAgnaveaLkkslapkakvlRdgkwqeleakelvpGDvval 118
                 GLsse++++r++ yG+n +   + + +    ++l++P+ +     ai+ ++ e w+  +  +  + +  at +f   ++  + +  ++++  +  +v Rdgkw++l +++l pGD++++
  MMETSP1174-20130828|8151_1 231 GLSSEDVQQRIDLYGKNIVRVPTPKIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIfTLFSIVMFEATTAFQRLRTF-STLGSMASK-PTPLQVYRDGKWSQLTTEDLLPGDLISF 347
                 9****************999888888888889******999999999987777787654156778889999999776665.455555544.44579********************987 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00085
   TIGR01647 120 lGdivpaDvklvegdklkvDqaaltGEslpvekk 153
                 + d+vp D+ +++g+   v++a+ltGEs+p  k 
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILSGS-AVVNEATLTGESVPQMKD 413
                 5699**********9.679***********8775 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00032
   TIGR01647 155 gdiaysgsvvkkGEveavvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkrkeslreslqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnkls 303
                 +d++        G + ++v  tG +   G+  +++e  +++++   k       vl+ +++     +l   l+k +++ +e l   ++++ + +P  lp+ +++++      L k+++  +    +     +     DktGtlt+++l+
  MMETSP1174-20130828|8151_1 451 DDNTAHPVKTPDGGCLCLVLRTGFSSSQGELMQMIEFSTQQVSADSKETGLALLVLLCFAIASAGYVLKKGLAKGDRTTHELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLV 599
                 44444444555788999*************9999997776665544444444556666666666777777888888888888989999999999*****98887777777889999999999999986666666668********9986 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 1.5e-09
   TIGR01647 363 pvekrteatledeetgkkfkvtkGapqvildlvkekkeieeeveekveelAerGlRaLgvava...........dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglg 482
                 p +   +  ++ +  +++   +kG+p++i +l +  + i   ++++   +Ae G+R L++a++           + + + +++g +++    r D+   i+  +e g +v m+tGD+ + a  +a+ +gl 
  MMETSP1174-20130828|8151_1 758 PSSMADADSINGS--ERTWCFVKGSPEAIRELLTP-ELIPAWYDASYGAMAEEGMRVLALAYKpgnglenaprsQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLC 885
                 4444444444444..478899********998875.578889******************************9888999***************************************9999999999985 PP

  == domain 5    score: 26.2 bits;  conditional E-value: 2.2e-09
   TIGR01647  504 eleelvekadGFAevfPeHkyeivealqkrgh..lvgmtGDGvnDaPaLkkAdvGiAv 559 
                   l e v  +   A   P+ k +++ +lq + h   v m GDG nD+ aLk+AdvG+A 
  MMETSP1174-20130828|8151_1  966 RLWEEVGAISVLARCSPQGKAKVIRSLQAASHhnFVLMCGDGGNDVGALKQADVGVAL 1023
                  4555666677789999************998845699*******************96 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0027      0.55      29     157 ..     227     347 ..     221     352 .. 0.75
   2 !   31.0   1.1   6.3e-11   1.3e-08     158     353 ..     380     599 ..     377     614 .. 0.79
   3 !   32.8   0.0   1.9e-11   3.8e-09     473     554 ..     803     884 ..     715     890 .. 0.93
   4 !   20.0   0.0   1.4e-07   2.9e-05     571     627 ..     965    1023 ..     952    1032 .. 0.83
   5 ?   -3.6   0.1       1.8   3.7e+02     825     851 ..    1395    1421 ..    1373    1426 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0027
   TIGR01524  29 sheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsyltedleavviialmvslsgllrfvqearaeraadalkkmvknt..atvlrvinenieaaleevpidelvpGdvikl 157
                 ++ +Gl+ ++v +r + yG+n v    ++p++ ql++      i+++ ++ ++ ++ ++    +i+ l  s+  +++    ++  r+ ++l +m ++    +v r      ++ + +++ ++l+pGd+i +
  MMETSP1174-20130828|8151_1 227 AKSQGLSSEDVQQRIDLYGKNIVR--VPTPKIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIFTLF-SI-VMFEATTAFQRLRTFSTLGSMASKPtpLQVYR------DGKWSQLTTEDLLPGDLISF 347
                 5689*****************875..5778888988877666688899999999999998887776554.22.23444445555566778888877540134555......899**************976 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 6.3e-11
   TIGR01524 158 aaGdlipadvrviaardlliaqsaltGeslpvekvaatkeakdkellele.....nlllmGtnvvs..................GraqavvlatGsstffGslakavsedreqtafdkGvksvskllirfmlvmvpvvllinGlskGdwl..eaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkiv 353
                  a d +p d+ +++    ++++++ltGes+p  k a + +a++k+ l+++       l+ Gt vv                   G +  +vl+tG s+  G+l + +  + +q + d     ++ l++    +     +l  Gl+kGd    e  l  + +   + p  lpm ++ ++    ++l k+ +   e   +   G +     dktGtlt d++v
  MMETSP1174-20130828|8151_1 380 QATDAVPCDLIILSGS-AVVNEATLTGESVPQMKDALKVDAHEKKSLNVDgahrvHTLFSGTSVVVaspaaeddntahpvktpdGGCLCLVLRTGFSSSQGELMQMIEFSTQQVSADSKETGLALLVLLCFAIASAGYVLKKGLAKGDRTthELLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLV 599
                 589*******887765.689****************9999999999888733333468999998741122222211111111113334689***************999999999998888888876666666666666789******8622666778889999*****************************************999**********997 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 1.9e-11
   TIGR01524 473 elnrqGlrvvavatkklkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi 554
                  +  +G+rv+a+a+k +++ e+  + + e++l  +Gf+af   ++  +   i+al+++g +v +ltGd+++ +  + ++vG+
  MMETSP1174-20130828|8151_1 803 AMAEEGMRVLALAYKPGNGLENAPRSQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGL 884
                 57889******************9999******************************************************8 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 1.4e-07
   TIGR01524  571 eelaaevekravfarltplqkerivtllkkeGht..vGflGdGindapalrkadvGisv 627 
                  + l +ev   +v+ar +p  k +++  l+ + h   v + GdG nd  al++advG+++
  MMETSP1174-20130828|8151_1  965 QRLWEEVGAISVLARCSPQGKAKVIRSLQAASHHnfVLMCGDGGNDVGALKQADVGVAL 1023
                  34677888999*******************9995337788****************975 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 1.8
   TIGR01524  825 lgasvglealplsyfpwliailvgyml 851 
                  l + + l ++p   f w +++lv   l
  MMETSP1174-20130828|8151_1 1395 LNNLIHLAPFPDDVFRWKVMTLVCLSL 1421
                  778999****************98765 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00021     0.044      24     142 ..     229     345 ..     224     352 .. 0.88
   2 !    8.5   0.0   0.00033     0.068     146     206 ..     381     443 ..     377     450 .. 0.73
   3 ?   -1.6   0.2      0.38        78     276     370 ..     501     599 ..     492     612 .. 0.68
   4 !   35.1   0.0   3.1e-12   6.4e-10     482     632 ..     729     885 ..     692     896 .. 0.74
   5 !   31.9   0.0   2.8e-11   5.7e-09     670     716 ..     975    1023 ..     957    1040 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00021
   TIGR01523  24 tegltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfattdwieggvisavivlnvlvglvqeykaektmdslktlaspnahvirsskseaidskdlvpgdvv 142
                 ++gl+ e++++r++ +g+n +   +  +  +++ +q+l  +++  +++ail +  + w       + iv+       q  ++  t+ s+ +  +p   v r++k   + ++dl+pgd++
  MMETSP1174-20130828|8151_1 229 SQGLSSEDVQQRIDLYGKNIVRVPTP-KIFQLIKEQLLSPIVIFQVFCAILWMLDEYWQYTIFTLFSIVMFEATTAFQRLRTFSTLGSMASKPTPL-QVYRDGKWSQLTTEDLLPGDLI 345
                 58******************998875.678999***************999999999988777777777777777789999999999998888886.79******************87 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00033
   TIGR01523 146 vgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkee...evsvgdrlnlaysssivv 206
                 + d+vp dl ++       +ea ltges+p +kda  v  +e+   +v    r+   +s + vv
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILSGSA-VVNEATLTGESVPQMKDALKVDAHEKkslNVDGAHRVHTLFSGTSVV 443
                 5799*****8887765.589***************87765554111344456888888765443 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.38
   TIGR01523 276 lav.llfciavllaiivma...aqkfdvdkevaiyaislalsiipeslvvvlsitmavgakvmv..krrvivrklealealgavtdicsdktgtltqgkml 370
                 la+ +l+c a+  a  v+    a+    ++e+ +  + +  s++p  l +   ++mav ++ m+  k  +       +   g ++    dktgtlt  +++
  MMETSP1174-20130828|8151_1 501 LALlVLLCFAIASAGYVLKkglAKGDRTTHELLLKCVIIITSVVPRQLPMQ--MAMAVNTALMAlmKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLV 599
                 554146677777776666422244455677888888888899999998755..56666666665114555555555667789999999********98876 PP

  == domain 4    score: 35.1 bits;  conditional E-value: 3.1e-12
   TIGR01523 482 snefvaeypfdsevkrmavvyedqqnetytvyakga.verilercsss...ygst..lee.pdvelii....kqveslaaeglrvlalaskvidkddvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgil 632
                 s + ++ + f+se++rm+vv   + ++  +v +  a  ++i     ++   +gs+  + e    eli     +   ++a+eg+rvlala k     +  + ++r+  es+l+f +++      r++s   ++ + ++g +v mltgd + ta  +a++vg+ 
  MMETSP1174-20130828|8151_1 729 SVQILQRHHFNSELQRMSVVCSVNWKK--EVPSSMAdADSINGSERTWcfvKGSPeaIRElLTPELIPawydASYGAMAEEGMRVLALAYKP---GNGLENAPRSQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLC 885
                 556667788888888888888766555..33333221344443333332124554222221234555411113455799**********986...5667789**********************************************************85 PP

  == domain 5    score: 31.9 bits;  conditional E-value: 2.8e-11
   TIGR01523  670 lviarcapqtkvkmiealhr..rkkfvamtgdgvndspslkqanvgiam 716 
                   v+arc+pq k k+i +l     ++fv m gdg nd  +lkqa+vg+a+
  MMETSP1174-20130828|8151_1  975 SVLARCSPQGKAKVIRSLQAasHHNFVLMCGDGGNDVGALKQADVGVAL 1023
                  489**************98522689**********************97 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.6e-06    0.0018     104     136 ..     381     413 ..     376     436 .. 0.89
   2 !   16.8   0.3   2.5e-06   0.00051     224     282 ..     545     603 ..     532     715 .. 0.83
   3 !   22.8   0.0   3.9e-08     8e-06     354     422 ..     830     895 ..     804     902 .. 0.89
   4 !   32.7   0.0   3.9e-11   8.1e-09     404     456 ..     969    1026 ..     960    1034 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.6e-06
   TIGR01511 104 pgekipvDGvvveGesevdeslltGEslpvkkk 136
                 + + +p D ++++G++ v+e+ ltGEs+p+ k+
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILSGSAVVNEATLTGESVPQMKD 413
                 6789*************************9886 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2.5e-06
   TIGR01511 224 PcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtev 282
                 P  l + + ++v  a  +  knG++  +   +  a ++++ +fDKTGTLT+ +l+ + v
  MMETSP1174-20130828|8151_1 545 PRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGV 603
                 55565666666666666677*******************************99875554 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 3.9e-08
   TIGR01511 354 vakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlaevlPedKaak 422
                 v+++ + a+++a + + ++++  vi+aL++ g +v +ltGD   +a  vAk +g+     ++P++K+++
  MMETSP1174-20130828|8151_1 830 VESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGL---CRQTPKGKTNT 895
                 5678889999********************************************8...88999999875 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 3.9e-11
   TIGR01511  404 kelg.ievlaevlPedKaakvkelqe....kkvamvGDGiNDapaLaaadvgiaigag 456 
                  +e+g i vla  +P++Ka+++++lq+    + v+m+GDG ND  aL +advg+a+ +g
  MMETSP1174-20130828|8151_1  969 EEVGaISVLARCSPQGKAKVIRSLQAashhNFVLMCGDGGNDVGALKQADVGVALLSG 1026
                  6665499*****************97222256**********************9887 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.5e-06    0.0011      52     182 ..     228     347 ..     222     352 .. 0.85
   2 !   20.1   3.4   1.6e-07   3.3e-05     183     384 ..     380     609 ..     377     630 .. 0.69
   3 !   19.4   0.0   2.5e-07   5.1e-05     411     587 ..     697     888 ..     675     896 .. 0.74
   4 !   21.5   0.0     6e-08   1.2e-05     603     653 ..     972    1025 ..     956    1036 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.5e-06
   TIGR01517  52 lneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGvailvsvllvvlvtavnDykkelqfreLn.ekkeekkikviRggqeiqisiadvvvGDivsl 182
                 + +G+ss+++++R   ygkn++  +++k  +ql++e l   ++i+ + +a+  + +++ +          +    +++ +v+  a   +++   f  L    ++  +++v R+g+  q+   d++ GD++s 
  MMETSP1174-20130828|8151_1 228 KSQGLSSEDVQQRIDLYGKNIVRVPTPKI-FQLIKEQLLSPIVIFQVFCAILWMLDEYWQ--------YTI---FTLFSIVMFEATTAFQRLRTFSTLGsMASKPTPLQVYRDGKWSQLTTEDLLPGDLISF 347
                 679******************99998886.58999999999999*******999877643........333...4455667788888899999*****945677899**********************996 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.6e-07
   TIGR01517 183 stGdvvpaDgvlisGlklkiDessltGesdpikk...........gk........ekLlsGtkvlegs..grmlvtavGvnsvtGkllte.lrea...geeeplql...kLselasligkfGlgsavll.llvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnv...msvvkgyig 384
                 +  d vp D +++sG + +++e+ ltGes p+ k           +         + L+sGt v+ +s  ++   ta  v++  G  l   lr++   ++ e +q+     ++++    + Gl   vll + +++  yv++k  ++ + ++++   l++ +v i+   vP  LP+ + +a+  a + l+k++    +       G       DktGtLt+++   m vv+ ++g
  MMETSP1174-20130828|8151_1 380 QATDAVPCDLIILSG-SAVVNEATLTGESVPQMKdalkvdahekkSLnvdgahrvHTLFSGTSVVVASpaAEDDNTAHPVKTPDGGCLCLvLRTGfssSQGELMQMiefSTQQVSADSKETGLALLVLLcFAIASAGYVLKKGLAKGDRTTHE---LLLKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQlvpMGVVNNMPG 609
                 567899999999999.67789999999986543311111111111212222222246889998765542266778999999887766543133221112333333321156677778888999877754388999999999988777666655...567888899999******************************99*********99*********97334566666655 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2.5e-07
   TIGR01517 411 eefiGsktetalLelvklllkdvkekr....keekvvkiypfeserkkmsvvvk..hseglRlfikGaseivl..kkcekkldsngeakeisekk...devedeienlasealRtislayk.....delpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltag 587
                 e++  +k +  ++el k ++ ++++      ++ ++++   f+se ++msvv +   ++ +   +  a  i+   ++  ++ +s + ++e+   +   +  +     +a e++R ++layk     +++p+  + +++l + + + ++   r++ +  ++  q++G  v m tGD   ta  +a++ g+  ++
  MMETSP1174-20130828|8151_1 697 EKTAKEKAQVRVVELQKSIKVQKQRAAdspvSSVQILQRHHFNSELQRMSVVCSvnWKKEVPSSMADADSINGseRTWCFVKGSPEAIRELLTPElipAWYDASYGAMAEEGMRVLALAYKpgnglENAPRS-QVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQT 888
                 45555677777888888877776665411114556788899**********9661156777777788877775114445666777778877665422366788999**************944332344444.44599************************************************9997665 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 6e-08
   TIGR01517  603 pklrvlaRssPlDkqlLve.lk..klgevvavtGDGtnDaPaLkladvGfamgi 653 
                    + vlaR sP+ k  +++ l+  ++ + v + GDG nD  aLk+advG+a+ +
  MMETSP1174-20130828|8151_1  972 GAISVLARCSPQGKAKVIRsLQaaSHHNFVLMCGDGGNDVGALKQADVGVALLS 1025
                  5689**********887742441156789********************99854 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.9e-06    0.0016      79     111 ..     381     413 ..     378     444 .. 0.84
   2 !   18.6   0.5   6.7e-07   0.00014     186     256 ..     534     604 ..     527     616 .. 0.88
   3 !   18.3   0.0   8.2e-07   0.00017     309     374 ..     829     890 ..     822     898 .. 0.87
   4 !   24.6   0.1   9.8e-09     2e-06     357     409 ..     965    1024 ..     959    1037 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.9e-06
   TIGR01512  79 kGervPvDGevlsgessldesalTGEsvpveka 111
                 + ++vP D  +lsg+++++e++lTGEsvp  k 
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILSGSAVVNEATLTGESVPQMKD 413
                 5689*************************8775 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.7e-07
   TIGR01512 186 lvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdve 256
                 l+ +++++   P  L + + +a+ +a+ a  ++Gi   +   +  ++k++  ++DKTGTLT+ +l+ + v+
  MMETSP1174-20130828|8151_1 534 LKCVIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQLVPMGVV 604
                 55666777778999999999*******************************************99988775 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 8.2e-07
   TIGR01512 309 lvaldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelGdevhaellPe 374
                  v  + +++g ia++ + r+d+  +i++L++ g +k+ +ltGD   +a  va+ +G    +  +P+
  MMETSP1174-20130828|8151_1 829 QVESNLQFAGFIAFNCKTRSDSPIVIRALQESG-HKVSMLTGDAPLTAYFVAKDVG---LCRQTPK 890
                 56778899*************************.799*******************...4555555 PP

  == domain 4    score: 24.6 bits;  conditional E-value: 9.8e-09
   TIGR01512  357 ekvaeelGd.evhaellPedKveivkelke......vamvGDGiNDapaLaaAdvgiamG 409 
                  +++ ee+G   v a ++P+ K +++++l++      v+m GDG ND  aL++Advg+a+ 
  MMETSP1174-20130828|8151_1  965 QRLWEEVGAiSVLARCSPQGKAKVIRSLQAashhnfVLMCGDGGNDVGALKQADVGVALL 1024
                  6667788863689************9987644444478********************84 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.52   1.1e+02     114     155 ..     381     417 ..     379     428 .. 0.76
   2 ?    0.7   0.0     0.084        17     358     375 ..     580     597 ..     579     602 .. 0.90
   3 !   10.6   0.0   8.4e-05     0.017     506     582 ..     726     817 ..     698     824 .. 0.83
   4 !   35.5   0.0   2.5e-12   5.1e-10     615     794 ..     828    1023 ..     819    1036 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.52
   TIGR01652 114 kdeeiPaDllllssseedGvcyveTknLDGEtnlKlrqalee 155
                 + +++P+Dl++ls     G+  v+ + L GE+  +++ al+ 
  MMETSP1174-20130828|8151_1 381 ATDAVPCDLIILS-----GSAVVNEATLTGESVPQMKDALKV 417
                 5789********8.....566788888888888777777765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.084
   TIGR01652 358 GqveyifSDKTGTLTqNk 375
                 G++ + + DKTGTLT+ +
  MMETSP1174-20130828|8151_1 580 GKISHCLFDKTGTLTTDQ 597
                 8999***********876 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 8.4e-05
   TIGR01652 506 eekeyeiLnvleFnSsrKRmsvivrlpdd.................ellLlcKGADsvifkrlseesekvlektkehlekyaseGlRTLviarr 582
                    + +iL+ + FnS+ +Rmsv++ ++ +                 + + ++KG    i + l    e +  +      ++a+eG+R L +a++
  MMETSP1174-20130828|8151_1 726 PVSSVQILQRHHFNSELQRMSVVCSVNWKkevpssmadadsingseRTWCFVKGSPEAIRELLTP--ELIPAWYDASYGAMAEEGMRVLALAYK 817
                 445779*****************9887555677778889999999999***************98..7799*********************98 PP

  == domain 4    score: 35.5 bits;  conditional E-value: 2.5e-12
   TIGR01652  615 eliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseemellvikeesldale.aveaaik.........keleeseeeleelkk..........keklalviDGksLklaLkeelekeflelalkckav.lcCRvsPsqKaavvklvkk.slskvtlaigdGaNDVsmiqeAdvGvGi 794 
                   ++E +L+  g  a   k  ++ p  i  L+e g k+ +LTGD   TA  ++    L ++  +  + +++   ale  v+++ +             ++++e++               +k+ lv   +  + a ++  ++   +l  ++ a+ +  R+sP+ Ka+v++ ++  s ++ +l  gdG+NDV+ +++AdvGv +
  MMETSP1174-20130828|8151_1  828 SQVESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQTPKGKTNTTDCALALErRVDDEGEcvgfewvgvL---AADKEQR---VpfepgklkalAQKHDLVTLESNWEDAAESLGDEAGQRLWEEVGAIsVLARCSPQGKAKVIRSLQAaSHHNFVLMCGDGGNDVGALKQADVGVAL 1023
                  579*******************************************************999998887776633333344444334454443221...2222222...12223333344444444443333333322222223344555555554557***********9999868899**********************76 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     2e-05    0.0041     133     167 ..     380     414 ..     375     419 .. 0.93
   2 ?   -3.0   0.0       1.5   3.1e+02     286     312 ..     569     595 ..     536     599 .. 0.75
   3 !    5.6   0.0    0.0036      0.74     457     491 ..     856     890 ..     828     923 .. 0.74
   4 !   30.6   0.1     1e-10   2.1e-08     481     538 ..     969    1028 ..     963    1046 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2e-05
   TIGR01497 133 eaGdvipadGevieGvasvdesaitGesapvlkes 167
                 +a d +p+d  +++G+a v+e+++tGes p +k++
  MMETSP1174-20130828|8151_1 380 QATDAVPCDLIILSGSAVVNEATLTGESVPQMKDA 414
                 689*****************************985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.5
   TIGR01497 286 iatsGraveaaGdvdtlvldktGtitl 312
                   t    v  aG +   ++dktGt+t 
  MMETSP1174-20130828|8151_1 569 FCTEPFRVPFAGKISHCLFDKTGTLTT 595
                 555555677899999*********996 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0036
   TIGR01497 457 qlrklGiktimltGdnrltaaviakeaGvddfiae 491
                  l++ G k  mltGd +lta  +ak+ G+     +
  MMETSP1174-20130828|8151_1 856 ALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQTPK 890
                 6889999********************98655544 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 1e-10
   TIGR01497  481 keaGvddfiaeatpedkievikkeqaeG..klvamtGdGtndapalaqadvgvamnsGtq 538 
                  +e G    +a + p+ k +vi+  qa    ++v m GdG nd  al qadvgva+ sG  
  MMETSP1174-20130828|8151_1  969 EEVGAISVLARCSPQGKAKVIRSLQAAShhNFVLMCGDGGNDVGALKQADVGVALLSGYG 1028
                  68899999**************9998652269***********************99854 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   3.0    0.0009      0.18      89     287 ..     382     604 ..     378     661 .. 0.69
   2 !   16.6   0.0   1.7e-06   0.00034     432     506 ..     799     885 ..     668     902 .. 0.64
   3 !   23.1   0.0   1.8e-08   3.8e-06     523     572 ..     975    1027 ..     963    1037 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0009
   TIGR01116  89 GdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaav.....qdkknmlfsGtlvv.........a.........GkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklskvia.licilvwvinikkf...laiyyfki.avalavaaiPeGlPavittclalGtrkma.kknalvrklP.svetlGcttvicsdktGtlttnkmsvaklv 287
                  d vp d+ +l+  s  v+++ ltGesv+ +k +  v  ++++        +   lfsGt vv         +         G  l++v rtG ++  G++ + ++ + ++    ++   e G +l  +++  i  + +v+  +      +++ + +  v +  + +P  lP  +   +a+ t  ma  kn +  + P +v   G  +    dktGtltt+++  + +v
  MMETSP1174-20130828|8151_1 382 TDAVPCDLIILS-GSAVVNEATLTGESVPQMKDALKVDAHEKKSlnvdgAHRVHTLFSGTSVVvaspaaeddNtahpvktpdGGCLCLVLRTGFSSSQGELMQMIEFSTQQV---SADSKETGLALLVLLCfAIASAGYVLKKGLAkgdRTTHELLLkCVIIITSVVPRQLPMQM--AMAVNTALMAlMKNGIFCTEPfRVPFAGKISHCLFDKTGTLTTDQLVPMGVV 604
                 578999997776.4667999************98888654443211111457789*****997444433333033333333366799************9988887766654...4555688877665554157778899875433111678877662566677889*****765..689999999955889999888679999****999**********98655554 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.7e-06
   TIGR01116 432 aslkelssealrclalavke............esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGil 506
                 as  ++++e++r+lala+k+            es+l f+G ++++   r++    i+  +e+G +v ++tGd   ta  +a+ +G+ 
  MMETSP1174-20130828|8151_1 799 ASYGAMAEEGMRVLALAYKPgnglenaprsqvESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLC 885
                 4566899999999999997444444444444489***************************************************86 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.8e-08
   TIGR01116  523 lvfsrvePshklklvel...keldqivamtGdGvndaPalkkadiGiamGsGt 572 
                   v++r  P+ k k+++     + ++ v m GdG nd  alk+ad+G+a+ sG 
  MMETSP1174-20130828|8151_1  975 SVLARCSPQGKAKVIRSlqaASHHNFVLMCGDGGNDVGALKQADVGVALLSGY 1027
                  689**********9985211456789***********************9984 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0065       1.3     168     203 ..     380     414 ..     375     451 .. 0.80
   2 ?   -3.3   0.2       1.5   3.1e+02     299     359 ..     537     597 ..     499     601 .. 0.72
   3 !   18.7   0.0   3.3e-07   6.8e-05     554     611 ..     831     888 ..     815     910 .. 0.84
   4 !   19.4   0.0   2.1e-07   4.2e-05     663     708 ..     976    1023 ..     959    1036 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0065
   TIGR01106 168 kggdripadlriisakglkvdnssltgesepqtrsp 203
                 ++ d +p dl i+s     v++++ltges pq + +
  MMETSP1174-20130828|8151_1 380 QATDAVPCDLIILSGSA-VVNEATLTGESVPQMKDA 414
                 56799*****9998765.5999**********9854 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.5
   TIGR01106 299 igiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnr 359
                 + ii + vp  l   +++++  +   l +   +  +   v   g  s    dktgtlt ++
  MMETSP1174-20130828|8151_1 537 VIIITSVVPRQLPMQMAMAVNTALMALMKNGIFCTEPFRVPFAGKISHCLFDKTGTLTTDQ 597
                 4455566666666665555554444444555555666778888999999999999999876 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 3.3e-07
   TIGR01106 554 venlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiiseg 611
                  +nl f+g++++    r+  p  +   + +g kv m+tgd p+ta  +ak vg+  ++
  MMETSP1174-20130828|8151_1 831 ESNLQFAGFIAFNCKTRSDSPIVIRALQESGHKVSMLTGDAPLTAYFVAKDVGLCRQT 888
                 579**************************************************98653 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 2.1e-07
   TIGR01106  663 vfartspqqkliivegcqrq..gaivavtgdgvndspalkkadigvam 708 
                  v+ar spq k  ++ + q       v + gdg nd  alk+ad+gva+
  MMETSP1174-20130828|8151_1  976 VLARCSPQGKAKVIRSLQAAshHNFVLMCGDGGNDVGALKQADVGVAL 1023
                  89************999975116799********************97 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.08        16      56     118 ..     647     713 ..     638     740 .. 0.84
   2 ?   -3.6   0.0       9.6     2e+03      27      55 ..     856     883 ..     853     889 .. 0.81
   3 !   13.5   0.0     6e-05     0.012     172     220 ..     976    1022 ..     917    1023 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.08
   TIGR01484  56 l...elpliaengalieaqgeklyaea.lpedvaevllseekelkeieailkslseryvgtfvedka 118
                 +   ++ ++a  g +  +++++++a++  ++  ++ l++eek+ + ++a++k+++e +  + ve+ +
  MMETSP1174-20130828|8151_1 647 VvgdPIEIAALKGVEWSYDATTQVARPgQWNIAEKALEEEEKAVETLGATEKTAKEKAQVRVVELQK 713
                 45557888999999999********99****************************998877776544 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 9.6
   TIGR01484  27 rlrealgvkvvivTGRslaeikellkqln 55 
                  l+e  g+kv+ +TG  +  +++++k ++
  MMETSP1174-20130828|8151_1 856 ALQES-GHKVSMLTGDAPLTAYFVAKDVG 883
                 67888.9********99999998888655 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 6e-05
   TIGR01484  172 levlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglava 220 
                  +  + + ++K+k++++l    +   +++l +GD+gND+ +l++a+++va
  MMETSP1174-20130828|8151_1  976 VLARCSPQGKAKVIRSLQAASH--HNFVLMCGDGGNDVGALKQADVGVA 1022
                  4444467899999999998888..99*******************9987 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.6e-05    0.0033     136     176 ..     978    1016 ..     955    1017 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.6e-05
   TIGR01488  136 vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllkl 176 
                   ++s + K kv+++l+++s    +++ ++GD+ nD+ +lk 
  MMETSP1174-20130828|8151_1  978 ARCSPQGKAKVIRSLQAASHH--NFVLMCGDGGNDVGALKQ 1016
                  7899*********98888855..679************996 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.6   3.4e+02      25      40 ..     854     869 ..     851     882 .. 0.87
   2 !   12.0   0.1   0.00012     0.024     189     229 ..     985    1023 ..     983    1031 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.6
   TIGR00099  25 laklrekGikvvlaTG 40 
                 +++l+e+G+kv  +TG
  MMETSP1174-20130828|8151_1 854 IRALQESGHKVSMLTG 869
                 7899***********9 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00012
   TIGR00099  189 KgsalqslaeklgislenviaiGDseNDieMleaagvgvam 229 
                  K++ ++sl+     + + v ++GD+ ND+  l+ a+vgva 
  MMETSP1174-20130828|8151_1  985 KAKVIRSLQA--ASHHNFVLMCGDGGNDVGALKQADVGVAL 1023
                  6666777666..44566799*******************97 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.4   1.3e+03      94     119 ..     854     879 ..     852     884 .. 0.78
   2 !   11.9   0.0   0.00013     0.027     163     192 ..     993    1022 ..     974    1028 .. 0.76
   3 ?   -3.9   0.0       9.1   1.9e+03      87     113 ..    1218    1244 ..    1194    1248 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 6.4
   TIGR00338  94 vkkLkekgykvaviSGgFdlvaeklk 119
                 +++L+e g kv ++ G   l a +++
  MMETSP1174-20130828|8151_1 854 IRALQESGHKVSMLTGDAPLTAYFVA 879
                 899***********998766666655 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00013
   TIGR00338  163 kegislektvavGDGanDlsmikaAglgia 192 
                  +   + + +++ GDG+nD+ ++k+A++g+a
  MMETSP1174-20130828|8151_1  993 QAASHHNFVLMCGDGGNDVGALKQADVGVA 1022
                  33445566899******************9 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 9.1
   TIGR00338   87 teGveelvkkLkekgykvaviSGgFdl 113 
                  +eG++   +++   g+ ++v+S +F++
  MMETSP1174-20130828|8151_1 1218 LEGARSSERQMMASGWLIMVASLAFSY 1244
                  68999999999999*******999987 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     7e-05     0.014     150     184 ..     985    1020 ..     975    1023 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7e-05
   TIGR01489  150 Kgkvieklsek.kkekivyiGDgvsDvcpaklldvv 184 
                  K kvi  l++  +++ ++++GDg++Dv + k+ dv 
  MMETSP1174-20130828|8151_1  985 KAKVIRSLQAAsHHNFVLMCGDGGNDVGALKQADVG 1020
                  899******996777889*************99985 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.03     120     189 ..     955    1022 ..     848    1026 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
   TIGR01482  120 avrevikklglelkkvssGkdldilpkgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkva 189 
                  a++ + ++ g +l +     ++ +l + +  Gka  +   + +++ + +l++GD++ND+++ + a+++va
  MMETSP1174-20130828|8151_1  955 AAESLGDEAGQRLWE--EVGAISVLARCSPQGKAKVIRSLQAASHHNFVLMCGDGGNDVGALKQADVGVA 1022
                  555555666666663..4456778888888888877777777888899*****************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.84u 0.22s 00:00:02.06 Elapsed: 00:00:01.68
# Mc/sec: 1176.12
//
Query:       MMETSP1174-20130828|8158_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|8162_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|8167_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|8168_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 866.73
//
Query:       MMETSP1174-20130828|8169_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00054   15.8   0.0    0.00072   15.4   0.0    1.1  1  TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type


Domain annotation for each model (and alignments):
>> TIGR00759  aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-07   0.00072     695     752 ..     148     206 ..     144     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.7e-07
   TIGR00759 695 PalPeeaeegilkGlyrfeeaeeekak.ekvqllgsGailrevreaaellakdygvasd 752
                  ++P+   ++i+kG+ ++ e + +k++   ++ll sGa + ++++a ell++   va +
  MMETSP1174-20130828|8169_1 148 TPMPPTLVDDIMKGMPQLPEGTLNKTEeATIELLNSGASVAKMKAAIELLKNGTPVAKE 206
                 579999*************999887651679********************98877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 724.47
//
Query:       MMETSP1174-20130828|8170_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1412.28
//
Query:       MMETSP1174-20130828|8171_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1290.09
//
Query:       MMETSP1174-20130828|8178_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|8180_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|8181_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|8183_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-77  257.7   0.1    4.3e-77  257.5   0.1    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   0.1     1e-80   4.3e-77     224     432 ..       2     216 ..       1     244 [. 0.88

  Alignments for each domain:
  == domain 1    score: 257.5 bits;  conditional E-value: 1e-80
   TIGR01064 224 egvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskak......kssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvdeeeeelek 432
                 egv+ +deI++asdgimvARGDLGveip e+v++ Qk+++  c+ agkpvi+ATqmLdSm+knprPTRAEv+Dv nAvldG+da+MLSgEta+GkYPv + ++m++ia+ea++  +k+++++  +  +++       +   e+va aav++a   +ak+i+ +t++g tar+++k+rp++p++ +  +  varql+++r  +p+l+ +++ e e+
  MMETSP1174-20130828|8183_1   2 EGVDHFDEILEASDGIMVARGDLGVEIPFEKVFVEQKRMVGLCNSAGKPVIVATQMLDSMQKNPRPTRAEVTDVGNAVLDGADAIMLSGETAAGKYPVLSLRAMRAIASEADSLKDKYSRADTVTSYQKTdgplhlDRPSLESVASAAVRTALDLDAKLIICITRKGATARAIAKMRPNIPVLTFCGSAAVARQLQFHRALYPMLMPDWSIEGEH 216
                 8***************************************************************************************************************9988666655542222221111114567899***************************************************************988766333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1249.50
//
Query:       MMETSP1174-20130828|8186_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 2016.07
//
Query:       MMETSP1174-20130828|8189_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.2   0.4       0.05   10.8   0.1    1.3  1  TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00513  accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.2e-05      0.05     269     313 ..      54      98 ..      50     105 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.2e-05
   TIGR00513 269 kggahrdkleaaaklkealledlktldklseeellqrryeklksl 313
                 +g +hrd+ e  ++ +e++  +l+ l++  e e+ q ry+k ksl
  MMETSP1174-20130828|8189_1  54 SGPTHRDNGEGPSQDREQVEMELRALEQNFEAEMAQLRYQKDKSL 98 
                 6779999999999****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 591.31
//
Query:       MMETSP1174-20130828|8196_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|8195_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1574.44
//
Query:       MMETSP1174-20130828|8197_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1065.69
//
Query:       MMETSP1174-20130828|8198_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|8201_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|8205_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   10.6   7.9      0.018   10.6   5.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.066   10.0   5.8      0.069    9.9   4.0    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
      0.087    8.2   7.8      0.086    8.3   5.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.14    8.4   7.5       0.15    8.3   5.2    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
       0.25    9.6   5.5       0.35    9.2   3.8    1.3  1  TIGR02420 dksA: RNA polymerase-binding protein DksA


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.5   2.2e-05     0.018     353     419 ..       5      71 ..       1      76 [] 0.46

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR02168 353 lesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerl 419
                 + sl+++l+++ +el+++++++++++e+l + ++ +a+  +++++++a+++ le+e ++l+e r ++
  MMETSP1174-20130828|8205_1   5 CHSLQSKLDKKVSELRNANREIASCKEDLARDEEIFADKLREIRQAQAKVNLLEEENKKLQEIRVQA 71 
                 4445555555555555555555555555555555555555555555555555555555555443332 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.0   8.4e-05     0.069     205     266 ..       6      66 ..       1      75 [. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.4e-05
   TIGR01843 205 aelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskard 266
                  +lq++l+++ +el ++++e+++ +e l+  e+   ++ ++e+r+aqa+++ leee +k+++
  MMETSP1174-20130828|8205_1   6 HSLQSKLDKKVSELRNANREIASCKEDLARDEEI-FADKLREIRQAQAKVNLLEEENKKLQE 66 
                 6789999******************999876655.56667899*************999987 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.4    0.0001     0.086     833     890 ..       9      66 ..       1      76 [] 0.24

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0001
   TIGR02169 833 eeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkk 890
                 +++ +++++e ++++  +++ ++ ++ ++   ++  +e+++++a+v+ Leee k+L++
  MMETSP1174-20130828|8205_1   9 QSKLDKKVSELRNANREIASCKEDLARDEEIFADKLREIRQAQAKVNLLEEENKKLQE 66 
                 2222222222222222222222222222222222222222222222222222222222 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.2   0.00018      0.15      78     141 ..       5      67 ..       1      75 [. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00018
   TIGR03319  78 lqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLeki 141
                  ++l+++l++k  +l + ++++ + +e+l + e+  ++k +e+++ +++++ l +e++++L++i
  MMETSP1174-20130828|8205_1   5 CHSLQSKLDKKVSELRNANREIASCKEDLARDEEIFADKLREIRQAQAKVNLL-EEENKKLQEI 67 
                 56778999999999999999999999999999999999999999999988654.5566677776 PP

>> TIGR02420  dksA: RNA polymerase-binding protein DksA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.8   0.00042      0.35      13      75 ..       1      67 [.       1      72 [. 0.73

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00042
   TIGR02420 13 LeewkqelleeaektleelkeeseefaD.eadrAtqEeeralelrt...rdRerkLlkKidealkri 75
                L+e+ ++l+++ +k+++el+++++e+a  + d A  Ee +a +lr     + +  Ll+  ++ l++i
  MMETSP1174-20130828|8205_1  1 LREMCHSLQSKLDKKVSELRNANREIAScKEDLARDEEIFADKLREirqAQAKVNLLEEENKKLQEI 67
                5778899**************98887653889*****988877775100444445677666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|8202_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   43.9   0.0    6.1e-12   43.5   0.0    1.1  1  TIGR00586 mutt: mutator mutT protein
    0.00029   18.3   0.1    0.00044   17.7   0.1    1.2  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0     3e-15   6.1e-12       5     115 ..      14     131 ..      12     143 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 3e-15
   TIGR00586   5 lqiav.giirnenneifitrraad..adlanklefPGGkieaGetpeqavvrelqeevgitaq...hfelfekleyeypqkkltlyvylvreleg.epfikegeegewvavreLdeer 115
                  qi+v g+++n  +e+++ +  +     + +++  PGG  ++Ge  +++v re++ee gi+++   ++++  +  + + q  l ++v l+   e+ ++ ++e   ++w+a  e+++++
  MMETSP1174-20130828|8202_1  14 TQIGVgGVVINTSGEVLMVQERVSplPAYQGSWKLPGGLADPGEHFAETVAREVREETGIESElhgVVSMRHTHGFRFGQSDLYVVVKLLAATEDiKIDTHELSAARWMARAEIEDKV 131
                 59999459********987766652247889*****************************98632235666777889999999999999876654278889999999*9999998765 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.2e-07   0.00044      48      75 ..      47      74 ..      41      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.2e-07
   TIGR02705 48 efPGGkveegetskeaaiRevleetGai 75
                  PGG  + ge  +e ++Rev eetG  
  MMETSP1174-20130828|8202_1 47 KLPGGLADPGEHFAETVAREVREETGIE 74
                57***********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1174-20130828|8204_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 782.83
//
Query:       MMETSP1174-20130828|8207_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1466.55
//
Query:       MMETSP1174-20130828|8211_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1174-20130828|8213_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|8208_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 954.98
//
Query:       MMETSP1174-20130828|8218_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   0.1       0.54    7.8   0.0    2.0  2  TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00708  cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0    0.0056        23     104     140 ..      39      77 ..      10      89 .. 0.78
   2 ?    7.8   0.0   0.00013      0.54      61     120 ..     104     164 ..      87     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0056
   TIGR00708 104 lvlLDeltvalkfgyLdveevvevlqekpksq..evvlt 140
                 + l+D + v  k+g+L+v   + v++e+p+ +  + vlt
  MMETSP1174-20130828|8218_1  39 VELMDVVQVYCKLGFLKVPPDLLVIKEHPDTTisHRVLT 77 
                 5699***************99999999998752255555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00013
   TIGR00708  61 vefkvlgaGftwetqdrkadtdi.kaakeawekakevlasseydlvlLDeltvalkfgyLd 120
                  + ++ ++G+   +q  k ++ + +a ++ w++ k+ +++   d +l+   + al++ +L 
  MMETSP1174-20130828|8218_1 104 NDLEISAKGWGELVQRGKGHKVLeNALRAHWKNTKKGIEERPSDKMLMQAHCAALEYAFLS 164
                 567788999998887666555556788999***************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 906.33
//
Query:       MMETSP1174-20130828|8217_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|8216_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-21   73.2   0.0    6.7e-21   72.8   0.0    1.1  1  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
    1.7e-16   58.4   0.0      2e-16   58.2   0.0    1.1  1  TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
    5.3e-08   30.2   0.0      7e-08   29.8   0.0    1.1  1  TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family
    9.7e-07   26.0   0.0    1.5e-06   25.4   0.0    1.2  1  TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   6.5e-24   6.7e-21       4     190 ..      76     279 ..      74     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 6.5e-24
   TIGR02764   4 eekkialTFdiswgee..kvekildvLkeedvkATFFlsgkwaerhpe.lvkeivkegheigshgyahkdltklekekikkdllkaqeviekltgkk.....pkllRpPsGsfnkevlkvaeelgykvvqwsvdslDw.......knpgvekivdrvvknvksGdiiLlH..asdsakqTekaLpeilkkLkekgyefvkvsel 190
                 ++k i+lTFd+ +g++     ++ldvL e+ ++ TFF +++ +    e lv++iv+eghei +h    k +++l+ ++  ++l +a+ ++e l  k+      + +R P+  +++ + ++ +e++  +v  +v s D           + +  v+ v +++k+G+i+L+H    ++++q ++   ++   L+e  ye v++s+l
  MMETSP1174-20130828|8216_1  76 KSKTISLTFDDAPGDNpaLFADLLDVLLEYGIHGTFFCITNLITPEMEpLVRRIVDEGHEITNHMPVDKGYHTLSADNFLQELSSAEVKLEALRDKSkhpssHRWFRAPNLMMSSCMAQTLKETNRYCVFADVFSGDVlvgnnnlSSRAIDYHVQYVKDRAKPGSIVLFHvpKLKERHQCVEITRRLAVALREMKYECVSLSRL 279
                 689***********65115689*******************9976554489*************************************99988765411111579************************999888775333211144566778999**************4445688899999999**************9987 PP

>> TIGR02884  spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     2e-19     2e-16      35     195 ..      76     247 ..      65     280 .. 0.76

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2e-19
   TIGR02884  35 skkviyltfde..GyenGytekildvlkekkvkaaffvtghyiktkpd.lvkrmedeGhivgnhsvhhpsltkvdeeklkeeleeveeevkevtgkke....mkylrPPrGkfsertlaltkelGyktvfWslaykdWkvd....kqkgkeeakkkilkkihpGailllhav 195
                 ++k+i ltfd+  G +    + +ldvl e  ++++ff +++ i+ + + lv+r++deGh ++nh    +   +++++++ +el++ e +++ + +k +     +++r P    s    ++ ke   + vf  +   d  v     + ++ ++  + + +++ pG+i+l+h  
  MMETSP1174-20130828|8216_1  76 KSKTISLTFDDapGDNPALFADLLDVLLEYGIHGTFFCITNLITPEMEpLVRRIVDEGHEITNHMPVDKGYHTLSADNFLQELSSAEVKLEALRDKSKhpssHRWFRAPNLMMSSCMAQTLKETNRYCVFADVFSGDVLVGnnnlSSRAIDYHVQYVKDRAKPGSIVLFHVP 247
                 78********85567778899********************99976544******************************************9999865222269*****98888765555555555566666555555554000056677778888999***********64 PP

>> TIGR02873  spore_ylxY: probable sporulation protein, polysaccharide deacetylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.8e-11     7e-08     100     238 ..      95     246 ..      70     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6.8e-11
   TIGR02873 100 lpkilkilkkhdvkatffleGkwvkenvq.lakmiveegheiGnhaynhpdmkklskeeiseqlektnevieatieek.....pkwfappsGsfrdevvqiaaelqmetilwtv...dtidwkk....pepsvlvdrvlskihpGaivlmhp 238
                 +  +l++l  + +  tff   + +  +++ l+++iv+eghei nh       ++ls ++  ++l+ ++  +ea  ++       +wf  p   +   + q+ +e++   ++  v   d +  ++     + +  v+ v+++ +pG+ivl+h 
  MMETSP1174-20130828|8216_1  95 FADLLDVLLEYGIHGTFFCITNLITPEMEpLVRRIVDEGHEITNHMPVDKGYHTLSADNFLQELSSAEVKLEALRDKSkhpssHRWFRAPNLMMSSCMAQTLKETNRYCVFADVfsgDVLVGNNnlssRAIDYHVQYVKDRAKPGSIVLFHV 246
                 5789**************999988765543**************************************99999877532222269*****999999999999999988887655222554333311114566778999999999***99995 PP

>> TIGR03006  pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.5e-09   1.5e-06      38     112 ..      97     172 ..      91     202 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.5e-09
   TIGR03006  38 rilelldekevkatffvlG.WvaeryPelvrriveaGhelashGyghervteltreefradierskklledlsgqa 112
                  +l++l e ++++tff +   ++  +  lvrriv++Ghe++ h    +  ++l+ ++f ++++ +   le l +++
  MMETSP1174-20130828|8216_1  97 DLLDVLLEYGIHGTFFCITnLITPEMEPLVRRIVDEGHEITNHMPVDKGYHTLSADNFLQELSSAEVKLEALRDKS 172
                 68999***********886267888889************************************999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1212.65
//
Query:       MMETSP1174-20130828|8219_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|8215_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1316.82
//
Query:       MMETSP1174-20130828|8222_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-48  160.3   0.0    7.1e-48  159.9   0.0    1.1  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase
  ------ inclusion threshold ------
      0.055   11.3   1.3      0.061   11.1   0.0    1.6  2  TIGR01905 paired_CXXCH_1: doubled CXXCH domain


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   3.5e-51   7.1e-48       2     127 ..      51     176 ..      50     182 .. 0.97

  Alignments for each domain:
  == domain 1    score: 159.9 bits;  conditional E-value: 3.5e-51
   TIGR00357   2 ksdeelkkkltklqyevtqnkgtekpftneykknkeeGiyvditsgeplfssedkfdsgcGWPsftkpiseeavkyekdeslgmirtevrskradahlGhvfddGPektGkryCinsaalkfiple 127
                 ks+ee++  lt++qy+v++++gte++ ++e+++ k++G++ ++ +g+plf++++kfdsg+GWPsf +pi+ ++v  ++d  l + rtev++ ++++hlGhvf+dGP+++G+ryC+n++a++f p +
  MMETSP1174-20130828|8222_1  51 KSEEEWQSVLTEMQYYVLREAGTEPAGSSELNSIKDNGTFLCAGCGSPLFTADTKFDSGTGWPSFFSPIDGDSVFLSTDYKLIIPRTEVQCGACKGHLGHVFEDGPKPSGQRYCLNGVAMQFQPDD 176
                 79************************************************************************************************************************9875 PP

>> TIGR01905  paired_CXXCH_1: doubled CXXCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     3e-05     0.061      15      35 ..      75      95 ..      74      98 .. 0.95
   2 ?   -3.2   0.2      0.92   1.9e+03       7      12 ..     139     144 ..     135     147 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3e-05
   TIGR01905 15 pHgSaepklLkedgtaLClgC 35
                p+gS+e + +k++gt LC gC
  MMETSP1174-20130828|8222_1 75 PAGSSELNSIKDNGTFLCAGC 95
                89******************* PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.92
   TIGR01905   7 gdCtsC 12 
                  +C++C
  MMETSP1174-20130828|8222_1 139 VQCGAC 144
                 579888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 945.33
//
Query:       MMETSP1174-20130828|8224_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-119  397.8   8.2   1.9e-119  397.4   5.7    1.0  1  TIGR00788 fbt: folate/biopterin transporter


Domain annotation for each model (and alignments):
>> TIGR00788  fbt: folate/biopterin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.4   5.7  4.7e-123  1.9e-119      14     451 ..      92     521 ..      79     535 .. 0.94

  Alignments for each domain:
  == domain 1    score: 397.4 bits;  conditional E-value: 4.7e-123
   TIGR00788  14 lgripvfsfePkvvlaiilqrlFekGiaglvrlalspmltdrlgldgaryqrlsglsslgwalkalagvlsdlfalfGYtkrwylvlsallgsallyglLpakessakvaalliflaalakalidvladalyveriR..rspaagpsLvslvwgasllGglissvlsGplldkkltrilvlitaallllslfvanlvkErra.fvrpridtvlevn.valltlgvlalvkkqilglkeaiklleiakavlfiflsylnlPgvlnavfvattqvLplgPefsgtvklvvnlgslagvvvvdrflkllplRlvfgltavlltlsslfdlilvkrlNlaiGisdevfvlgdsiilevlaqlkfmPvlvllarlcPsGsEssvfalLasilhlgsvvssalGvlLmeligitsdnsnalwllillhilapllplpllyllPrledv 451
                 l+  ++ + eP ++la+i++ +F++G +gl+rla +++l+d+l+l +a+ ++l gl+s +w++k+++g+lsd+++ fGY++r+ylvl++++g a ++ +L++ + +   aa++i  ++l +a++dv++d+ +v r+R   s+a++++L+sl+wg+s++Gg++s++ sG  l+    ++ +l+++ ++ll+ +v+ ++ E+ra ++ p+   + e n   l  lg  a v+ ++ +l+ a+ ++e++ +  f+f  ++++P++  ++f++ t+ L ++Pef+g+v+l+ +++ lagv+++++fl++  +  v++++ +     +l++l lv+++N+aiGi+d++f++gd ++l+vl q+ fmP+lvl+a+lcP G+E+++falL+s ++ + ++ss+lG+lL++++g+t++ + +l+ll+++++l++llplp+lyll    dv
  MMETSP1174-20130828|8224_1  92 LQDNLLLGVEPTPELAAIMTTYFVQGGLGLARLATTFYLKDDLKLGPAESAALLGLASFPWVIKPVYGFLSDSVPIFGYRRRSYLVLAGVVG-AAAWVSLGTWVATPTQAAVAITFTSLGVAVSDVVVDSIVVARARdaGSQAVSGALQSLCWGSSAVGGILSAYASGAALEVVSAKTIFLASSCFPLLVAAVSIIITEERAvVGTPKE-SQ-E-NdGSL--LG--AEVQSKVNDLWSAVTQREVWLPAAFMFC-WQATPSAGTSFFYFMTNDLGFKPEFLGRVQLAESIAGLAGVWIYQKFLRTAKISDVLLWSSLASLPPGLLQLALVTHYNRAIGIPDTWFAVGDDVVLTVLGQIAFMPTLVLAAKLCPPGVEGTLFALLMSSYNGAGILSSELGALLTKVLGVTENDFTNLSLLVVVCNLSSLLPLPFLYLLD---DV 521
                 56667889************************************************************************************.********************************************8779************************************************************94444554.34.3.42333..34..67999***********************.***********************************************************************************************************************************************************************************997...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 2119.59
//
Query:       MMETSP1174-20130828|8231_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|8227_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1570.22
//
Query:       MMETSP1174-20130828|8229_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-113  376.4   0.9   2.8e-113  376.1   0.6    1.0  1  TIGR03722 arch_KAE1: universal archaeal protein Kae1
    5.6e-85  283.1   0.0    6.6e-85  282.8   0.0    1.0  1  TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
    3.3e-61  205.0   0.2    5.1e-61  204.3   0.1    1.3  1  TIGR03723 bact_gcp: putative glycoprotease GCP
    3.7e-07   28.2   0.0    6.3e-07   27.4   0.0    1.4  1  TIGR03725 bact_YeaZ: universal bacterial protein YeaZ
    3.9e-06   23.1   0.5    9.7e-06   21.8   0.3    1.7  1  TIGR00143 hypF: carbamoyltransferase HypF


Domain annotation for each model (and alignments):
>> TIGR03722  arch_KAE1: universal archaeal protein Kae1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.1   0.6  3.4e-116  2.8e-113       2     308 ..      45     363 ..      44     370 .. 0.93

  Alignments for each domain:
  == domain 1    score: 376.1 bits;  conditional E-value: 3.4e-116
   TIGR03722   2 lGiestahtlgvgivde....ekeilanvkktyvpekg.GihPreaaehhaeaikkvlkealeeakvsledidavafsqGPGlgPaLrvvataaraLalklekplvgvnhavahveigrlatgakdPvvlyvsGgntqvlalekgryrvfGetlDiavGnllDkfaRevglahP..GgpkieklaekgkelielPyvvkGmdlsfsGlltaalralkkg.....akledvcyslqetafamlvevteRalaltekkevllvGGvaankrLremleemaeergakfkvvpkeyagDngamiaytGllaykegvtvevees 308
                 lGie+ a+++gvg+++       +il+n +ktyv++ g G  Pre+a+hh+++i +++++al +a+++ ++i ++ +++GPG+g  L+  a++ar+Lal +++p+vgvnh+vah+e+gr+at+++dPvvlyvsGgntqv+a++ +ry +fGet+DiavGn+lD+faR + l+     g +ie+la++g+++ielPyvvkGmd+sfsGllt + +++ +      a+ +d+c+slqet+faml+evteRa+a+ +++ vl+vGGv++n+rL++m++ m+eerg ++++++++y+ Dngamia++G+lay +g ++ ++++
  MMETSP1174-20130828|8229_1  45 LGIEGSANKVGVGVLKFsppdIYTILSNPRKTYVAPVGhGFMPRETAKHHQNHIVALVRTALCDANIDASQIGLICYTKGPGMGGPLQSCAMCARTLALLWKVPIVGVNHCVAHIEMGRVATNVSDPVVLYVSGGNTQVIAYSMRRYHIFGETIDIAVGNCLDRFARIIKLSNDpsPGYNIEQLAKQGTKFIELPYVVKGMDVSFSGLLTFIEQEAARLlssgeATAADLCFSLQETVFAMLIEVTERAMAHCGQNTVLIVGGVGCNRRLQQMMKIMVEERGGSLAAMDHRYCIDNGAMIAQAGVLAYLQGEETTMADT 363
                 9**************98555446899*******988777**********************************************************************************************************************************99753255679******************************766554432222358899***********************************************************************************99988776 PP

>> TIGR00329  gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.8   0.0     8e-88   6.6e-85       1     305 []      45     345 ..      45     345 .. 0.95

  Alignments for each domain:
  == domain 1    score: 282.8 bits;  conditional E-value: 8e-88
   TIGR00329   1 LgiEtscddtgvavvdee....kkvlanlkisqaklhakegGvvPelAsrhHaekipkllekalkesnvelseidliavtagPGlagaLlvgatvArsLalaldkPligvnHllgHilaplletkklqlpfvsLlvSGGhtqiiavksiedyevlgetlDdavGealDkvarelglk..ypggpaieelakkgkekkfefplpltkkakldfsfSglktaalrkleklkseleeaelediaysfqeavidhliektkralkkkelkelvlaGGvsaNkrLrekleelleelnvefylpplefcsDNgamIa 305
                 LgiE+s+++ gv+v++ +      +l+n  +++ +      G +P++ ++hH+++i  l++ al ++n+++s+i li++t+gPG++g L+  a+ Ar+Lal +++P++gvnH+++Hi+++++ t+   +++v+L+vSGG+tq+ia++   +y+++get+D+avG++lD++ar + l      g +ie+lak+g++    ++lp+++k++ d+sfSgl+t++ ++  +l     ea+ +d+++s+qe+v+++lie t+ra+++ + ++++++GGv  N+rL+++++ ++ee+  ++   +  +c DNgamIa
  MMETSP1174-20130828|8229_1  45 LGIEGSANKVGVGVLKFSppdiYTILSNPRKTYVA--PVGHGFMPRETAKHHQNHIVALVRTALCDANIDASQIGLICYTKGPGMGGPLQSCAMCARTLALLWKVPIVGVNHCVAHIEMGRVATN--VSDPVVLYVSGGNTQVIAYSMR-RYHIFGETIDIAVGNCLDRFARIIKLSndPSPGYNIEQLAKQGTK---FIELPYVVKGM-DVSFSGLLTFIEQEAARL-LSSGEATAADLCFSLQETVFAMLIEVTERAMAHCGQNTVLIVGGVGCNRRLQQMMKIMVEERGGSLAAMDHRYCIDNGAMIA 345
                 8**************98886667788888888877..5678************************************************************************************..99***************99766.**************************943335789**********...99*********.***************999.55899****************************************************************************8 PP

>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.3   0.1   6.2e-64   5.1e-61       2     312 ..      45     351 ..      44     353 .. 0.90

  Alignments for each domain:
  == domain 1    score: 204.3 bits;  conditional E-value: 6.2e-64
   TIGR03723   2 LgiesscDetavavve....dgkevlsnvvasqielhakyg.GvvPElAsRahleklaplveealeeagvkledidaiAvtagPGLvgaLlvGvsvakalalalkkpliavnHlegHllaalleekelefpflaLlvSGghtqlllvkevgeyellgetlDDaaGEafDKvakllglgy.Pg.GpaidklakegdekafklprpllekkeldfSFsGLKtavlnlveklkeeeeelekadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsalrekleelaekkglevllpklklctDNaamiaaagaer 312
                 Lgie s    +v+v++    d  ++lsn   +     a  g G +P   +++h ++++ lv++al +a++++++i  i +t+gPG+ g L   +++a++lal +k+p+++vnH  +H+   +++ ++++ p+ +L vSGg+tq+++  ++++y+++get+D a+G + D+ a++++l+  P+ G +i++lak+g +k ++lp  ++    +d+SFsGL t + + +++l +++e  ++ad++ s+qe+v+ +l+e ++ra+++ + +t++++GGv++N++l+++++ ++e++g ++ + + ++c DN+amia ag+ +
  MMETSP1174-20130828|8229_1  45 LGIEGSANKVGVGVLKfsppDIYTILSNPRKTY---VAPVGhGFMPRETAKHHQNHIVALVRTALCDANIDASQIGLICYTKGPGMGGPLQSCAMCARTLALLWKVPIVGVNHCVAHIEMGRVA-TNVSDPV-VLYVSGGNTQVIA-YSMRRYHIFGETIDIAVGNCLDRFARIIKLSNdPSpGYNIEQLAKQG-TKFIELPYVVKG---MDVSFSGLLTFIEQEAARLLSSGE-ATAADLCFSLQETVFAMLIEVTERAMAHCGQNTVLIVGGVGCNRRLQQMMKIMVEERGGSLAAMDHRYCIDNGAMIAQAGVLA 351
                 9***************53332233444443333...3444449********************************************************************************9.8888885.69********987.5789**************************75454499********9.678999988765...9**************999988755.556****************************************************************************9875 PP

>> TIGR03725  bact_YeaZ: universal bacterial protein YeaZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.7e-10   6.3e-07      29     100 ..      90     161 ..      83     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 7.7e-10
   TIGR03725  29 sgrrhselllpaieellaeaglslqdldaiavglGPGsFTGlRiGlatakgLalalgipvvgvssldalaaa 100
                  ++ h+++++ +++++l +a++  +++  i  ++GPG    l + +  a++Lal +++p+vgv+   a  + 
  MMETSP1174-20130828|8229_1  90 TAKHHQNHIVALVRTALCDANIDASQIGLICYTKGPGMGGPLQSCAMCARTLALLWKVPIVGVNHCVAHIEM 161
                 6789***********************************************************988777665 PP

>> TIGR00143  hypF: carbamoyltransferase HypF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.3   1.2e-08   9.7e-06     592     737 ..     201     347 ..      86     351 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-08
   TIGR00143 592 svGRllDavaalleiiaertyegeaaikLEalalrskeevnipleiknk...vldlkelllkvlek.lleledr.ekialiakkfvasGlvelileiaekagiekivisGGvfynkllleevakalkeegfellfpkelpagDggislGqa 737
                 +vG  lD  a ++++    + +  ++ ++E+la++ ++ +  p+ +k        l +++ +   + l ++e   +++ +  ++ v   l+e+  +++ ++g ++++i GGv +n+ l++ ++ +++e+g +l    +    D+g  + qa
  MMETSP1174-20130828|8229_1 201 AVGNCLDRFARIIKL----SNDPSPGYNIEQLAKQGTKFIELPYVVKGMdvsFSGLLTFIEQEAARlLSSGEATaADLCFSLQETVFAMLIEVTERAMAHCGQNTVLIVGGVGCNRRLQQMMKIMVEERGGSLAAMDHRYCIDNGAMIAQA 347
                 566667776666655....557789**********************994442334444444433304444443145566677777677**********************************9**9999888766655555666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1249.07
//
Query:       MMETSP1174-20130828|8237_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1174-20130828|8233_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1371.40
//
Query:       MMETSP1174-20130828|8238_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 915.41
//
Query:       MMETSP1174-20130828|8242_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|8240_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1102.11
//
Query:       MMETSP1174-20130828|8245_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 917.78
//
Query:       MMETSP1174-20130828|8248_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 855.29
//
Query:       MMETSP1174-20130828|8244_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-90  301.7   0.0    1.9e-90  301.0   0.0    1.4  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    5.6e-59  197.4   0.0    7.9e-59  196.9   0.0    1.2  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    2.7e-16   57.0   0.0    5.2e-11   39.6   0.0    2.4  2  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.019   11.3   0.0      0.032   10.6   0.0    1.2  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0   0.0   1.8e-93   1.9e-90       3     339 ..      56     406 ..      54     408 .. 0.93

  Alignments for each domain:
  == domain 1    score: 301.0 bits;  conditional E-value: 1.8e-93
   TIGR03181   3 vrvldedgevvdeelaaklseeelvelyremvltRrldekalalqRqGrlgtyapllGqEAaqvgsalalrkeDvlvpsYRdaaallarGvkleeillywrgde....kgsklp.....eevnilpinvpigtqvlhAaGvAlalklkgekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeeeewkk..kdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYa....elpkeleeqke 339
                 ++ l++dg+   + +a  +s  e v++yr+m+++ ++de   a qRqGr+++y  ++G+EA+ vg+a+al+++D++ p+YR+ +++l rG++++++     g+     +g++lp      e+n+ +++ ++gt+v++A G+++a +l+ge++++vay+GdG++segd  +alnfAav++a++ f+++NN+++IS+ ++ q + + +a+++ a++ip  +vDGnD++Avy++++ea+    + +gP+++E +tYRlg Htt+Dd + Yr++ e eew++    P+ r+r++Le++g++  e+e+++++ea++e+++a++++e++  p+ ++lf +++a    ++p++l+eq++
  MMETSP1174-20130828|8244_1  56 LQQLRKDGS-LAPGVALPFSLGEGVKMYRTMLRSNVFDEILEASQRQGRISFYCTNTGEEATAVGTAAALSPDDMIWPQYRELGMFLWRGLTPQQVCDACVGNVdnlgQGRNLPlhyclPEANVQTVHAVLGTHVPQAPGAGYAYRLDGEEKISVAYFGDGAASEGDSLTALNFAAVYEAQTLFICRNNGYSISTRVEDQYKGDGIAARGPAFDIPTARVDGNDLVAVYNATQEARRLILERKGPVMLELMTYRLGHHTTSDDSSLYRKSGEIEEWTAegVRPLDRMRALLEREGAWGAEQEKAARSEARSEITNALKAAENKAMPPLASLFGDTFAggagDQPWHLKEQHR 406
                 677888888.67777788889999*************************************************************************9999987222246666677777779********************************************************************************************************************************************************99973346******************************************************8444457788888765 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   0.0   7.7e-62   7.9e-59       5     314 ..      79     390 ..      76     391 .. 0.97

  Alignments for each domain:
  == domain 1    score: 196.9 bits;  conditional E-value: 7.7e-62
   TIGR03182   5 lelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekykkedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRskeeveevk..krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLlkdvy 314
                 +++yr+ml+   f+e  +    +g+i  ++  ++G+EA+avg+ aal++dd++  +YR+ g+ l +g+++++v    +g  + + +G+   +H +  e ++   h+++g +vp a G+ +a ++ +e+++++a+fGdga+++G    +ln+aa+++   +f++ nn y++ t ve + +   +a +g +f+i++ +vdG d++av++a++ea   + ++kgPv+lel tyR   H  sD    yR+  e+ee++     p++++++ l ++g    e+ k+ ++e+++e+++a + ae++  p++++L+ d++
  MMETSP1174-20130828|8244_1  79 VKMYRTMLRSNVFDEILEASQRQGRISFYC-TNTGEEATAVGTAAALSPDDMIWPQYRELGMFLWRGLTPQQVCDACVGNVDNLGQGRNLPLHYCLPEANVQTVHAVLGTHVPQAPGAGYAYRLDGEEKISVAYFGDGAASEGDSLTALNFAAVYEAQTLFICRNNGYSISTRVEDQYKGDGIAARGPAFDIPTARVDGNDLVAVYNATQEARRLILERKGPVMLELMTYRLGHHTTSDDSsLYRKSGEIEEWTaeGVRPLDRMRALLEREGAWGAEQEKAARSEARSEITNALKAAENKAMPPLASLFGDTF 390
                 799***********************8666.799**********************************************************************************************************************************************************************************************************9986549**********953457*************************************************98887 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06    0.0015     115     179 ..     187     251 ..     177     256 .. 0.91
   2 !   39.6   0.0   5.1e-14   5.2e-11     352     573 ..     506     738 ..     456     757 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-06
   TIGR00204 115 tsisaglGiavaaelkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilndnemsisenv 179
                 t +  + G   a  l+g+++  va  GdGa + G  l aln a   + + l i  +n  sis+ v
  MMETSP1174-20130828|8244_1 187 THVPQAPGAGYAYRLDGEEKISVAYFGDGAASEGDSLTALNFAAVYEAQTLFICRNNGYSISTRV 251
                 66777778899999************************************************987 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 5.1e-14
   TIGR00204 352 kryfdvaiaeqhavtlaaalaieGlkPvvai.ystflqraydqvvhdvaiqklpvllaidraGi........vGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrG..navgveltee.ekleiGksellrkgedilllgfGtlveealevaeelkek.gieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn 573
                 +r+ +  +aeq  + +a + +  G   v  + ++ ++  a+dq+v ++a  +     a    Gi        vG  G+ +      +++ + P l l++P+   ++k +l  +++ d +p+ +  P+    ++  e+ +   +l++G +e+l +g+d+ ++++G+ +++ l++a++ ke  g+++ v+dl+ + P d + + a ++++ +lv+ +e+ ++ G+g+ +a  ++d+ 
  MMETSP1174-20130828|8244_1 506 DRVSNAPVAEQAIAGFAVGASQAGWDVVAEMqFADYIFPAFDQIVNEIAKYRYRTGGAFHCGGItirtpcgaVGH-GSMYHSQSPEAFFSHCPGLKLVVPRGPLQAKGLLLASIR-DPNPVIFFEPKIlyRSAIDEVPPGdFELPLGVAEVLLPGDDVTIVAWGAQLQRCLDAAQQAKETlGVSCEVIDLQTIIPWDVDTVAASVNRTGRLVIAHEAPVTSGFGAEIAAKIQDRC 738
                 66777889***********9999998877654899**************99998887777777632222111333.22333344569****************999998877665.668988888875222333444444589*****************************9999887559*********************************************99888875 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.1e-05     0.032     464     519 ..     659     716 ..     652     739 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.1e-05
   TIGR03710 464 advlvigwGstkgaikeaverlree.glkvallhlrllnPlpke.laellekakkvvv 519
                  dv++++wG + + + +a+++++e+ g++++++ l+ + P   + +a+ +++  ++v+
  MMETSP1174-20130828|8244_1 659 DDVTIVAWGAQLQRCLDAAQQAKETlGVSCEVIDLQTIIPWDVDtVAASVNRTGRLVI 716
                 5899******************9988****************9999888888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 2021.24
//
Query:       MMETSP1174-20130828|8251_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 549.07
//
Query:       MMETSP1174-20130828|8254_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|8252_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|8259_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|8260_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|8262_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.53
# Mc/sec: 1130.62
//
Query:       MMETSP1174-20130828|8263_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.5   0.0        0.1   10.0   0.0    2.0  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.5e-05       0.1      42     169 ..       7     136 ..       2     148 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.5e-05
   TIGR01262  42 efkalNPqelvPtLkide.........gevltqSlAiieyLeetypepa.LlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpq 169
                  fk+l P+ lvP+L   +          +++ +S+ i++ L++++p+++ +   d+ + +++ ++ +++ +       ++  + l+      +++k++    ++++ l+ l++ l+++ag f  G + t  d +++p 
  MMETSP1174-20130828|8263_1   7 WFKELVPTTLVPALLFHGdgaegakpeRKIVWESMDIMKALDKEFPDTPrM-ILDTPEFEQALQMNEALNTAGFSFVYASRNESLT------DADKEDRRVAFLDQ-LDHLDAALSHSAGPFRLGTSFTGIDAIMIPT 136
                 588999*******9887778999999888999****************953.4444444444444443332222222222222222......22222222223322.5666666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1468.91
//
Query:       MMETSP1174-20130828|8267_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 205.90
//
Query:       MMETSP1174-20130828|8269_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|8270_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 500.88
//
Query:       MMETSP1174-20130828|8271_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.51
# Mc/sec: 85.40
//
Query:       MMETSP1174-20130828|8268_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1493.13
//
Query:       MMETSP1174-20130828|8273_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|8274_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 961.63
//
Query:       MMETSP1174-20130828|8275_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|8278_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1438.68
//
Query:       MMETSP1174-20130828|8282_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|8285_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-05   20.4   0.0    6.8e-05   19.7   0.0    1.3  1  TIGR01923 menE: O-succinylbenzoate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.6e-08   6.8e-05     347     385 ..       2      42 ..       1      56 [. 0.86

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.6e-08
   TIGR01923 347 RrddliI.SGGENiypeeiEkvlks.lpevqeavvvpkeDs 385
                 R +dliI  GGENi p  iE+ lks lp+v++ +vv+   +
  MMETSP1174-20130828|8285_1   2 RVKDLIItAGGENIAPTSIEDKLKSvLPAVSNLLVVGDRQK 42 
                 889999946************9998459********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 746.78
//
Query:       MMETSP1174-20130828|8286_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|8290_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   24.0   0.0    5.4e-06   23.4   0.0    1.3  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.9e-05   21.6   0.0    2.4e-05   21.3   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.9e-05   21.6   0.0    2.9e-05   21.0   0.0    1.3  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    3.2e-05   20.7   0.0    4.2e-05   20.4   0.0    1.1  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    9.3e-05   19.2   0.0    0.00028   17.7   0.0    1.6  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase


Domain annotation for each model (and alignments):
>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.5e-09   5.4e-06     156     316 ..       2     180 ..       1     199 [. 0.67

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.5e-09
   TIGR03947 156 GasvderelsellelaaesgavllWdaafadlvy....daeplp.....epsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltls...lsPlvellaevavehadalieprlaearanrrrlldWaa.........ahedvvrltvPeGGvaafprfagladvtdlCer 316
                 G+s+++ + ++l el a+ g ++  d+ ++ l +    +  +l+      + +++ rvis+gt+sk    pGlr+GW  +  + +++l   +d++ ls     Plv  + +  +++ d   +   ++a    r  + ++a          ++ vv++ +P+GG   + rf++ + + dl   
  MMETSP1174-20130828|8290_1   2 GTSITPDGARKLCELSAKYGVYVFADEPYSMLDFpglaRETTLSlksydAAPQETSRVISMGTFSKIL-APGLRLGWLHGGVEAVSALS--QDQVLLSgggFNPLVGEMVHALLRSGDMDEQLAWTNALYAERATRMFTAfdlyfgnggSRGRVVEYHMPSGGYFGWIRFTDGTRTDDLHAF 180
                 88999999999999999999999999877665442222233343111104557789**********97.5**********999999876..5888887444689999999999998875444444444333333333322111112222677789999999999999999777766666443 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.9e-08   2.4e-05     182     337 ..       6     178 ..       1     190 [. 0.74

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.9e-08
   TIGR03540 182 dkeffkevvefakeyniivvhdaayseivfdey...kalsflevdgakdva...ielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvke...lrkvykkrrdllvealk....kiG.....ldvkkpkatfylWvkvPeGytsaefa 337
                 + +  +++ e++++y++ v  d++ys + f +    ++ls+ + d a + +   i + ++sk     G r+g+  G  e ++al++ +  +  G f+++    ++al ++ ++ ++   ++++y++r   ++ a+     + G     ++ + p++ ++ W++  +G+ + ++ 
  MMETSP1174-20130828|8290_1   6 TPDGARKLCELSAKYGVYVFADEPYSMLDFPGLareTTLSLKSYDAAPQETsrvISMGTFSKIL-APGLRLGWLHGGVEAVSALSQDQVLLSGGGFNPLVGEMVHALLRSGDMDEQlawTNALYAERATRMFTAFDlyfgNGGsrgrvVEYHMPSGGYFGWIRFTDGTRTDDLH 178
                 56677899**********************8861114566666777755441226677777765.47***************************************9877666555211689******9999987522221122223367778888888888888887766655 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.5e-08   2.9e-05     189     253 ..       8      78 ..       1      96 [. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.5e-08
   TIGR01265 189 dHlekvvevaeklklliiaDEvYdklvfgd...atfvplakla....skvPvlslggiskrwlvPGWrlGWl 253
                 d  +k+ e+++k+++ ++aDE Y  l f +   +t ++l +++    ++  v+s+g+ sk  l PG rlGWl
  MMETSP1174-20130828|8290_1   8 DGARKLCELSAKYGVYVFADEPYSMLDFPGlarETTLSLKSYDaapqETSRVISMGTFSK-ILAPGLRLGWL 78 
                 566899***********************9887788888877522225677999999998.689*******8 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.1e-08   4.2e-05     190     254 ..       8      78 ..       1      93 [. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5.1e-08
   TIGR01264 190 khleellalaerlklpiladeiyedlvfkg...atflalaslss...evPilslgGlakrllvPGWrlGWl 254
                 +  ++l  l++++ + ++ade y+ l f+g    t l+l s+++   e  +++  G+  ++l PG rlGWl
  MMETSP1174-20130828|8290_1   8 DGARKLCELSAKYGVYVFADEPYSMLDFPGlarETTLSLKSYDAapqETSRVISMGTFSKILAPGLRLGWL 78 
                 55689999**********************876667777777743336788999999999**********8 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.4e-07   0.00028     180     359 ..       2     198 ..       1     217 [. 0.70

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.4e-07
   TIGR03538 180 GavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrty.hGcampiavq...lasiaaWedekhvrenralyrekfaavleil..........gavldlelPdasfylWlkvpdg...dd.eafaralyeeenvkvlpGryl 359
                 G+ ++ +  +kl el+ ky+  + +de ys l +   ++ + l   + +   ++  r++ + ++sk   +PGlr G++ G  e +++  + +    G   ++ v    +a ++  + ++ ++ + aly+e+  ++ + +          g+v++ ++P+++++ W++ +dg   dd +af+ +  ++ +v+ l+G+  
  MMETSP1174-20130828|8290_1   2 GTSITPDGARKLCELSAKYGVYVFADEPYSMLDFPGLARETTLSLKSYDAAPQETSRVISMGTFSKI-LAPGLRLGWLHGGVEAVSALSQDQVLlSGGGFNPLVGemvHALLRSGDMDEQLAWTNALYAERATRMFTAFdlyfgnggsrGRVVEYHMPSGGYFGWIRFTDGtrtDDlHAFIAEHRDRYRVEFLAGNKC 198
                 677888999***********************998888888887778888889************96.58*************9999988776425666655443111455555554555666667777664443332211122222226799999999999999998554121332678888888889999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1052.35
//
Query:       MMETSP1174-20130828|8291_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 883.31
//
Query:       MMETSP1174-20130828|8292_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 956.92
//
Query:       MMETSP1174-20130828|8300_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1174-20130828|8302_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   29.4   0.0    2.3e-07   28.9   0.0    1.2  1  TIGR02097 yccV: hemimethylated DNA binding domain


Domain annotation for each model (and alignments):
>> TIGR02097  yccV: hemimethylated DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   5.7e-11   2.3e-07      10      61 ..       2      54 ..       1      67 [. 0.80

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.7e-11
   TIGR02097 10 vrHklfgyrgvvidvDpeyanseewl..eaievekkpekdqPfYhvlvedeete 61
                + H+ fg ++vv+++  ++++ e+w+  + i+++ ++  +qPfYhvl+ ++   
  MMETSP1174-20130828|8302_1  2 LEHRFFG-QCVVVGWSLTCSMGEDWIveNCIRENLRNGPEQPFYHVLLKENPIP 54
                5799998.8****************8434588888888*********9876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 617.37
//
Query:       MMETSP1174-20130828|8305_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|8303_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 981.00
//
Query:       MMETSP1174-20130828|8306_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 736.58
//
Query:       MMETSP1174-20130828|8309_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 756.40
//
Query:       MMETSP1174-20130828|8307_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1260.28
//
Query:       MMETSP1174-20130828|8308_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-21   73.3   0.2    2.8e-20   70.1   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.5e-21   73.4   0.1    1.5e-19   68.0   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    8.8e-16   54.6   0.0    2.3e-07   26.7   0.0    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    9.4e-13   45.1   0.0    2.7e-12   43.5   0.0    1.6  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    7.1e-11   39.3   0.0      1e-06   25.6   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    5.7e-07   26.0   0.0    1.3e-06   24.8   0.0    1.6  1  TIGR00631 uvrb: excinuclease ABC subunit B
    5.5e-05   19.5   0.0    5.5e-05   19.5   0.0    1.5  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00012   19.2   0.0    0.00025   18.1   0.0    1.5  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    0.00029   17.8   0.0    0.00029   17.8   0.0    2.3  3  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0013   14.2   0.0      0.003   12.9   0.0    1.7  1  TIGR01054 rgy: reverse gyrase
  ------ inclusion threshold ------
        1.1    5.2   7.3      0.058    9.4   0.0    2.2  3  TIGR03714 secA2: accessory Sec system translocase SecA2


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.099        37      16      50 ..     148     182 ..     139     185 .. 0.85
   2 !   70.1   0.0   7.5e-23   2.8e-20     201     332 ..     372     503 ..     334     519 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.099
   TIGR01389  16 ggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                 + q + i   l+ rd++++  tG Gk   + vP L
  MMETSP1174-20130828|8308_1 148 PIQRQAIPIGLEWRDIIGIAETGSGKTCAFVVPLL 182
                 6677788888999*****************99977 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 7.5e-23
   TIGR01389 201 lafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaD 332
                 ++ +v ++++ ++ l+    k  ++  i++ + +k+ + +a+ Le+ gi   + h+G  +++R++++e F +   +v+vat   G G+d +dv  vi +d+P+++e+y    GR GR G++  a ++ +e D
  MMETSP1174-20130828|8308_1 372 VVIMVSESQKPNHLLTCARPKSGDDKVIVFVNEKKRCDMVARSLEKSGIRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYDMPNKIENYCHRIGRTGRAGKEGLATTFITEGD 503
                 445555555555555444445555888********************************************************************************************9988888777766 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.021       7.8       8      49 ..     142     183 ..     137     186 .. 0.88
   2 !   68.0   0.0   3.9e-22   1.5e-19     227     334 ..     396     503 ..     365     517 .. 0.91

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.021
   TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavv 49 
                 ++ +  p q ++i   le rd + +  tG Gk   + +p ++
  MMETSP1174-20130828|8308_1 142 KYVQPSPIQRQAIPIGLEWRDIIGIAETGSGKTCAFVVPLLC 183
                 56666799*************************999999876 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 3.9e-22
   TIGR00614 227 ksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaD 334
                 +  i++ + +k+++ va +L+k g+ +   h g  +++r++  + f     qv+vat   G G++ pdv +vi y++p +ie+Y   +GR GR g +  ++ f + +D
  MMETSP1174-20130828|8308_1 396 DKVIVFVNEKKRCDMVARSLEKSGIRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYDMPNKIENYCHRIGRTGRAGKEGLATTFITEGD 503
                 4459********************************************************************************************999999998887 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.3e-09   4.8e-07      13     152 ..     145     286 ..     135     290 .. 0.85
   2 !   26.7   0.0   6.2e-10   2.3e-07     250     350 ..     397     493 ..     392     517 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.3e-09
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpsliela......akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeL 152
                 +p + Q++++    e ++ + ia TG+GKT a ++p l  ++      ++++ ++g  +l ++P + La++ie   ++  e+lg + +v++  G +  +++    ++  ++++ Tp  l+   + +++  ++++++ vv+DE   +
  MMETSP1174-20130828|8308_1 145 QPSPIQRQAIPIGLEWRDIIGIAETGSGKTCAFVVPLLCYIMdlpddrREKTAEDGPLALIMAPTRELAQQIEGETKRISEHLGYK-TVSVVGGQS-IQDQGFYLREGVEVVIGTPGRLKD--AIESSYMVLNQCNYVVLDEADRM 286
                 677889999999999999999*****************99999998866667779***************************9987.577766655.5566667778899*******9986..55677889***********8665 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 6.2e-10
   TIGR04121 250 ttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldep 350
                  ++vF+N +++++++ ++L +       + ++ Hg  +++qRe+  + +++g ++++v+T     G+D  dv +vi+   p  +     RiGR++ + +e 
  MMETSP1174-20130828|8308_1 397 KVIVFVNEKKRCDMVARSLEKSG----IRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYDMPNKIENYCHRIGRTGRAGKEG 493
                 689***********999997654....5699**************************************************************99766554 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   7.4e-15   2.7e-12      21     382 ..     130     498 ..     118     514 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 7.4e-15
   TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp..........ratalylaPtkalaadqlravkelee..rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGv.fGshvalvlrrlrrlcary.GaePvfllasatsadpaaaasrliGleve.avtedgsPrgartvvlwePallelegengapvrrsasaeaadlladlvaegvrtltfvrsrrgaevva..leakerlaevdaelae...rvaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                 +++++++a+++    +p   q +a  +  + ++++  + t sGk+ a+ +P+l  +++ p          +  al +aPt+ la+      k ++e      +++  G + +++  ++re  ++v+  P  l  +i  s+     +l++ +yvv+de+ +   + f ++v  vl  +    +     e     a a         + l  ++++   t  ++ +   ++ l +Pa++++ + +g++ +r    e   ++    ++  + lt  r ++g + v   ++ k+r + v+++l +   r +   +G  +++r +  + ++ G ++ ++at+    G+di  +  v+    P ++  +  ++Gr+Gr+g++ l++  
  MMETSP1174-20130828|8308_1 130 LPEEIMRAIKDLKYVQPSPIQRQAIPIGLEWRDIIGIAETGSGKTCAFVVPLLCYIMDLPddrrektaedGPLALIMAPTRELAQQIEGETKRISEhlGYKTVSVVGGQSIQDQGFYLREGVEVVIGTPGRLKDAIESSY----MVLNQCNYVVLDEADRMVDMgFETDVNFVLDAMGGTLKSEfEEEAYKQEAMAKR------GEALFRVTCMfSATMPAAVERLAKMYLRHPAIVSIGDRDGSKNKR---IEQVVIMVSESQKPNHLLTCARPKSGDDKVIvfVNEKKRCDMVARSLEKsgiRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYDMPNKIENYCHRIGRTGRAGKEGLATTF 498
                 456788888888888888889999999999999999999***************9999866667777777999************999999999885434457788999**************************98876....5899**********99876669*******9988765544403333333333333......333444443313334455556678999**************9988...5788899998888889999998888877654116677888888888865333888899999999998888899****************************************************99744 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   4.7e-05     0.018     280     368 ..     196     285 ..     163     288 .. 0.68
   2 !   25.6   0.0   2.7e-09     1e-06     478     534 ..     413     471 ..     363     519 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.7e-05
   TIGR00643 280 viesGyqvalmaPTeiLAeQhyeklrelleplgie.valLtgslkkkkkkelleeiasGeielvvGThallqekve.....fkeLalviiDEQhr 368
                 + e+G  +++maPT  LA+Q   + +++ e+lg + v+++ g++ +++  +l+e      +e+v+GT   l++++e     +++ ++v+ DE  r
  MMETSP1174-20130828|8308_1 196 TAEDGPLALIMAPTRELAQQIEGETKRISEHLGYKtVSVVGGQSIQDQGFYLREG-----VEVVIGTPGRLKDAIEssymvLNQCNYVVLDEADR 285
                 557889999*******************999866513334444444444444443.....67******999999984433345668999999887 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.7e-09
   TIGR00643 478 kaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                 +++  + +++ +lhg  ++d++e+ le Fr +  ++LvaT v   G+d+P+++ ++ +d
  MMETSP1174-20130828|8308_1 413 RSLekSGIRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYD 471
                 4442355799******************************************9887555 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.4e-09   1.3e-06     440     519 ..     392     471 ..     370     500 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.4e-09
   TIGR00631 440 vaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailD 519
                 ++ +++v+v +  kk ++ ++  l++ gi+   lh      +r + ++ +r+g f+vlv  ++   GlD+P+vs v   D
  MMETSP1174-20130828|8308_1 392 KSGDDKVIVFVNEKKRCDMVARSLEKSGIRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYD 471
                 556899********************************************************************987655 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.6       1.7   6.3e+02     172     194 ..      50      72 ..      15     108 .. 0.40
   2 !   19.5   0.0   1.5e-07   5.5e-05     685     734 ..     420     469 ..     398     507 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.7
   TIGR00580 172 lsleveelvleakalslsevele 194
                 ++l+ +e + +  a +l+e+e+e
  MMETSP1174-20130828|8308_1  50 NDLRDRERARRRAAAELKEMEKE 72 
                 11111111111112222222222 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.5e-07
   TIGR00580 685 ariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiii 734
                 +r  i Hg  ++++ e+ ++ F +++f+vLv+T +   G+dip++  +i 
  MMETSP1174-20130828|8308_1 420 IRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVIN 469
                 6889****************************************998874 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.7e-07   0.00025     160     322 ..     333     492 ..     319     513 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.7e-07
   TIGR01587 160 lmsAtlp...kllkeyl.ekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelap..idsLiQRlGRlaRygrk 322
                 + sAt+p   ++l +++ ++  +v      d +++kr+e+    ++++++++  + l+   +  +   kv+++vN  +r   +   l  ++      +lH+  t+  re+     l+ ++  +  v+vaT v+  +lDi +v  +i    p  i+    R+GR  R g++
  MMETSP1174-20130828|8308_1 333 MFSATMPaavERLAKMYlRHPAIV-SIGDRDGSKNKRIEQVV--IMVSESQKPNHLLT-CARPKSGDDKVIVFVNEKKRCDMVARSLEKSGIR--CSILHGGKTQDQREQS----LEYFRTGAFQVLVATDVAGRGLDIpDVSQVINYDMPnkIENYCHRIGRTGRAGKE 492
                 679****77755555440444444.33333333335554444..55555555555555.567888899***************9999977776..999***9988887766....99****9999*************98788777766654488999999999997764 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   1.5       7.9   2.9e+03     215     275 ..      15      76 ..      11      84 .. 0.60
   2 ?    1.1   0.0      0.09        33      26      76 ..     161     222 ..     142     237 .. 0.71
   3 !   17.8   0.0   7.7e-07   0.00029     262     379 ..     365     485 ..     325     497 .. 0.80

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 7.9
   TIGR04095 215 tedetdeYveltekiskllakee.eeeseasealkaLLikRarligsaenklkaLkkllskr 275
                 + +e+++  ++ + + +  + ee + e e+++  k  L  R r   +a++ lk+++k  +++
  MMETSP1174-20130828|8308_1  15 DMQEQRRSNAFNQTLIEKRQAEErQAELEDQTLSKNDLRDRERARRRAAAELKEMEKERNTK 76 
                 55555555555555444444444366777777777777777777777777777766655554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.09
   TIGR04095  26 rGilkma.tGtGktlta....Lalvskl......aekikslvvvvvvPykhLveqWakeaek 76 
                 r i+ +a tG+Gkt       L  ++ l      +   +  + ++++P ++L++q   e+++
  MMETSP1174-20130828|8308_1 161 RDIIGIAeTGSGKTCAFvvplLCYIMDLpddrreKTAEDGPLALIMAPTRELAQQIEGETKR 222
                 455555559****9764222256677778887643334456778999********9988876 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 7.7e-07
   TIGR04095 262 enklkaLkkllskreeesktlvYcgdgktedek....eeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGR 379
                 +nk  +   ++ +++++ ++l+ c+  k  d+k     +e+++ d v + l  + g+r++     + +++Re+ l+ f +g++q+lva      G+D+P++ + +     +   ++  R GR
  MMETSP1174-20130828|8308_1 365 KNKRIEQVVIMVSESQKPNHLLTCARPKSGDDKvivfVNEKKRCDMVARSLE-KSGIRCSILHGGKTQDQREQSLEYFRTGAFQVLVATDVAGRGLDIPDVSQVINYDMPNKIENYCHRIGR 485
                 5555555566777778888899999877775552222578999999999996.569********************************************9886555444444555555555 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.1e-06     0.003     331     410 ..     397     473 ..     166     483 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.1e-06
   TIGR01054 331 GglvfvsidyGkekaeeieeelkekgvkakliha.....kdkedldkfeeGeidvliGvasyygvlvRGlDlPervryavFlgvP 410
                  ++vfv+ +    + + ++++l+++g++ +++h      + +++l+ f+ G ++vl+     ++v  RGlD+P++++  + +++P
  MMETSP1174-20130828|8308_1 397 KVIVFVNEK---KRCDMVARSLEKSGIRCSILHGgktqdQREQSLEYFRTGAFQVLVA----TDVAGRGLDIPDVSQ-VINYDMP 473
                 578999887...889999*************996511113456799**********96....57888******9876.4666766 PP

>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.9   1.6       6.7   2.5e+03     555     600 ..      34      79 ..      22      95 .. 0.54
   2 ?   -0.1   0.0      0.11        43     191     207 ..     270     286 ..     260     291 .. 0.75
   3 ?    9.4   0.0   0.00016     0.058     426     541 ..     397     506 ..     326     516 .. 0.71

  Alignments for each domain:
  == domain 1    score: -5.9 bits;  conditional E-value: 6.7
   TIGR03714 555 kkekkeskekekallkrrvrkivekaqraseekaesareqtiefee 600
                 + e+++ + ++++l k+ +r   +  +ra+ e  e+ +e+  ++e+
  MMETSP1174-20130828|8308_1  34 QAEERQAELEDQTLSKNDLRDRERARRRAAAELKEMEKERNTKLEK 79 
                 2333334444555555555555444455555555555555555544 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.11
   TIGR03714 191 kflrklnyvivDevDsv 207
                   l++ nyv++De+D +
  MMETSP1174-20130828|8308_1 270 MVLNQCNYVVLDEADRM 286
                 3589***********86 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00016
   TIGR03714 426 PvLlitgsvelselysklLlkegiphnvLnaqnvakeaqiiaeaGqkga..vtvatslaGrGtDikLgkgvkelGGLavigtermensrvdlqlr..GrsGrqGDpGlsqffvsleDdlv 541
                  v++++   +  ++ ++ L k+gi  ++L    +        e  ++ga  v vat +aGrG Di    +v++      +++  m+n ++++     Gr+Gr G  Gl++ f+   Dd v
  MMETSP1174-20130828|8308_1 397 KVIVFVNEKKRCDMVARSLEKSGIRCSILHGGKTQDQREQSLEYFRTGAfqVLVATDVAGRGLDIP---DVSQ------VINYDMPN-KIENYCHriGRTGRAGKEGLATTFITEGDDEV 506
                 566667777777777788888888888887665554444444555555533789***********5...5554......35667787.455443224************99998755543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 1312.82
//
Query:       MMETSP1174-20130828|8311_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|8312_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|8310_1  [L=1139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.5  53.1    0.00055   17.5   1.7   10.1 10  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
  ------ inclusion threshold ------
        3.3    6.4   7.5        1.1    7.9   0.9    3.3  2  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0019         4      11      22 ..     223     234 ..     223     240 .. 0.82
   2 !   17.5   1.7   2.7e-07   0.00055       4      22 ..     243     261 ..     242     267 .. 0.84
   3 !    6.4   0.1   0.00094       1.9       3      19 ..     268     283 ..     266     285 .. 0.87
   4 !    7.7   0.4   0.00036      0.74       6      20 ..     297     311 ..     294     318 .. 0.91
   5 !    5.2   1.3    0.0023       4.6       6      19 ..     323     337 ..     321     338 .. 0.93
   6 ?   -0.3   0.2      0.12   2.6e+02       6      20 ..     351     365 ..     351     366 .. 0.85
   7 ?    2.8   0.1     0.013        26       6      19 ..     377     390 ..     376     392 .. 0.92
   8 ?    3.1   0.1      0.01        22       6      19 ..     430     444 ..     427     444 .. 0.91
   9 ?    1.9   0.8     0.024        49       6      26 ..     457     479 ..     456     481 .. 0.82
  10 ?   -2.0   0.0      0.43   8.8e+02       6      15 ..     486     496 ..     486     497 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0019
   TIGR01376  11 sakgsGGAIyat 22 
                 +a+++G AIya+
  MMETSP1174-20130828|8310_1 223 YATEHGSAIYAS 234
                 6999*******8 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2.7e-07
   TIGR01376   4 tilFsnNsakgsGGAIyat 22 
                 t +F++N+a+g+GGAIy +
  MMETSP1174-20130828|8310_1 243 TCSFESNTAAGYGGAIYIS 261
                 579**************55 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00094
   TIGR01376   3 gtilFsnNsakgsGGAI 19 
                 ++ +F +Nsa  +GGA 
  MMETSP1174-20130828|8310_1 268 DSCSFLSNSAV-YGGAM 283
                 6789*******.***95 PP

  == domain 4    score: 7.7 bits;  conditional E-value: 0.00036
   TIGR01376   6 lFsnNsakgsGGAIy 20 
                 +F++Nsa+  GGA y
  MMETSP1174-20130828|8310_1 297 SFNKNSAGWDGGAVY 311
                 8************99 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.0023
   TIGR01376   6 lFsnNsakg.sGGAI 19 
                 +F+ Nsa+g +GGA 
  MMETSP1174-20130828|8310_1 323 SFEANSAGGsRGGAV 337
                 7*************7 PP

  == domain 6    score: -0.3 bits;  conditional E-value: 0.12
   TIGR01376   6 lFsnNsakgsGGAIy 20 
                 +F  Nsa+  GGA +
  MMETSP1174-20130828|8310_1 351 SFKTNSAGWTGGAVF 365
                 68889**99****75 PP

  == domain 7    score: 2.8 bits;  conditional E-value: 0.013
   TIGR01376   6 lFsnNsakgsGGAI 19 
                 +F+ N+a  +GGA 
  MMETSP1174-20130828|8310_1 377 SFEANYAHAGGGAV 390
                 7***********96 PP

  == domain 8    score: 3.1 bits;  conditional E-value: 0.01
   TIGR01376   6 lFsnNsakg.sGGAI 19 
                 +F  N+a   +GGAI
  MMETSP1174-20130828|8310_1 430 SFKDNYADAdGGGAI 444
                 799******999999 PP

  == domain 9    score: 1.9 bits;  conditional E-value: 0.024
   TIGR01376   6 lFsnNsakg...sGGAIyatgkis 26 
                 +F  N+a +    GGA+ a+   +
  MMETSP1174-20130828|8310_1 457 SFKANTALNqgaTGGALKAN-QGT 479
                 69999999988899999998.566 PP

  == domain 10    score: -2.0 bits;  conditional E-value: 0.43
   TIGR01376   6 lFsnNsakg.s 15 
                 +F +N+a + +
  MMETSP1174-20130828|8310_1 486 TFKSNYAPKdQ 496
                 7******8755 PP

>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.9   0.00055       1.1      12      33 ..     829     850 ..     827     851 .. 0.69
   2 ?   -0.2   0.4       0.2     4e+02       9      27 ..     962     983 ..     960     985 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00055
   TIGR01167  12 lllllGllllglaglllrkrkk 33 
                 +++l+G++ l+++++++ ++k+
  MMETSP1174-20130828|8310_1 829 VYILAGIVALLAIAIFGMRKKN 850
                 689****666565666666665 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.2
   TIGR01167   9 snslllllGl..lllgl.agll 27 
                 +n +l++ ++  +l++l ++++
  MMETSP1174-20130828|8310_1 962 GNQILVVTMFpiILILLiGFVV 983
                 6777788888875555524444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.55
# Mc/sec: 2733.37
//
Query:       MMETSP1174-20130828|8315_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1089.97
//
Query:       MMETSP1174-20130828|8316_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.3   0.6      0.026   11.8   0.0    2.1  1  TIGR01933 hflK: HflK protein
  ------ inclusion threshold ------
      0.016   13.0   0.3      0.025   12.4   0.2    1.3  1  TIGR01990 bPGM: beta-phosphoglucomutase


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.3e-05     0.026      93     170 ..      51     129 ..      32     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR01933  93 dsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddv.iaAredeerlin 170
                   +++e+    sl+ei+ ++  ++ e+   +l+  ld +  G+++v+v+l +   P ++++ F+   ++A e + ++ +
  MMETSP1174-20130828|8316_1  51 AHVMNEMCTTLSLHEIFITKFAEMDETLSGQLQMKLDVWCPGLQIVNVRLTKPSIPPDIQKHFEALsNIASELKVQVER 129
                 56899999999********9*******************************************9853677776655544 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.2e-05     0.025      18      75 ..     111     167 ..     105     197 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
   TIGR01990  18 yhylawkkladelgiefdeelnesLkGvsReesleailkkakkkyseeekeelaerkn 75 
                  h++a  ++a el ++++++ n +L+   +e +le+++ +++ ++++ + ++l ++  
  MMETSP1174-20130828|8316_1 111 KHFEALSNIASELKVQVERQKN-TLRTAEKERTLEKMMAEKEAAVATMHYQRLHSDAE 167
                 6****************99987.6******************9999999888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1061.91
//
Query:       MMETSP1174-20130828|8317_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.48
# Mc/sec: 1495.88
//
Query:       MMETSP1174-20130828|8322_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-06   24.2   1.4    6.7e-05   20.4   0.1    2.4  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.6e-08   6.7e-05       7      25 ..      12      28 ..       3      31 .. 0.88
   2 !    3.0   0.1    0.0053        22      14      20 ..      48      54 ..      43      55 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.6e-08
   TIGR01376  7 FsnNsakgsGGAIyatgki 25
                F++Nsa+  GGAIy++   
  MMETSP1174-20130828|8322_1 12 FESNSAG-EGGAIYTE-HS 28
                *******.******98.55 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0053
   TIGR01376 14 gsGGAIy 20
                g+GGA+y
  MMETSP1174-20130828|8322_1 48 GYGGALY 54
                49***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|8321_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   12.9   0.8      0.015   12.3   0.4    1.5  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.4   3.5e-06     0.015     267     309 ..       6      47 ..       3      90 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-06
   TIGR01587 267 EaellkelkknekfvivaTQviEvslDisvdvlitelapidsL 309
                 E  l k l+++++ v++aT ++E+ +D  + v it+l+++d+L
  MMETSP1174-20130828|8321_1   6 EMDLPKTLSEEKSSVAIATALVEA-IDAHIKVCITDLSTLDAL 47 
                 5555567888999**********7.9****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|8324_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|8327_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|8328_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1174-20130828|8326_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.32s 00:00:00.54 Elapsed: 00:00:00.93
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|8329_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.6   0.0    1.1e-05   22.4   0.0    1.0  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0073   13.1   0.0      0.008   12.9   0.0    1.0  1  TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
  ------ inclusion threshold ------
      0.015   10.7   0.0      0.017   10.4   0.0    1.0  1  TIGR01054 rgy: reverse gyrase
      0.022   10.8   0.0      0.027   10.5   0.0    1.0  1  TIGR00603 rad25: DNA repair helicase rad25


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-08   1.1e-05      16      79 ..      21      85 ..      10     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.1e-08
   TIGR04095 16 aikaWfknn.grGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFgl 79
                a+ a+f+++  r ++ +  G+Gkt+ aL ++++la k++  + +v++P  +Lv+q  +e  ++  
  MMETSP1174-20130828|8329_1 21 ALAAFFDDGmSRATVVLPGGSGKTVLALRVAEALAAKKELRICLVLTPALDLVSQTHREWMRWRT 85
                555666554268899999*************************************9999876655 PP

>> TIGR01085  murE: UDP-N-acetylmuramyl-tripeptide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   7.8e-06     0.008      69     164 ..      17     112 ..       3     126 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.8e-06
   TIGR01085  69 alsslaaafydepskklkviGvtGTnGKttttsliaqllek.lgkktgligTvglelggeelikeeakltTpealelqkllaemveagaeyavlEvS 164
                 a   + aaf+d+   + +v+   G +GKt  +  +a++l + ++ +  l+ T  l+l++++  +    +tTp al+  k la     + +++ lE S
  MMETSP1174-20130828|8329_1  17 ARDAALAAFFDDGMSRATVV-LPGGSGKTVLALRVAEALAAkKELRICLVLTPALDLVSQTHREWMRWRTTPGALDGWKRLAVCSSVSESVVPLEES 112
                 44456689999988888776.8999*******99998876515669*************999999999********999999988888888888877 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.7e-05     0.017      99     142 ..      34      79 ..      28      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.7e-05
   TIGR01054  99 aivaPtGvGkttfglvmslflakk.gkr.vyiilPttlLvkqvaek 142
                 ++v P G Gkt++ l ++  la+k   r ++++ P   Lv+q+ + 
  MMETSP1174-20130828|8329_1  34 TVVLPGGSGKTVLALRVAEALAAKkELRiCLVLTPALDLVSQTHRE 79 
                 5789***********9998888774444389999********9875 PP

>> TIGR00603  rad25: DNA repair helicase rad25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.7e-05     0.027     264     325 ..      20      85 ..      11      91 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.7e-05
   TIGR00603 264 kslrkmfGnGrarsGiivlpcGaGkslvG..vtaactvkks...vlvlctsavsveqwkqqfklwst 325
                  +l   f +G +r+  +vlp G+Gk++    v+ a + kk+   +lvl+ +   v+q +  +  w t
  MMETSP1174-20130828|8329_1  20 AALAAFFDDGMSRAT-VVLPGGSGKTVLAlrVAEALAAKKElriCLVLTPALDLVSQTHREWMRWRT 85 
                 57888999***9987.58********98722455556666444478888888889999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.43s 00:00:00.68 Elapsed: 00:00:00.87
# Mc/sec: 206.33
//
Query:       MMETSP1174-20130828|8331_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.36s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 387.36
//
Query:       MMETSP1174-20130828|8332_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.019   12.3   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.012   12.1   0.3      0.019   11.4   0.2    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.4e-06     0.019     106     172 ..     557     621 ..     547     639 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.4e-06
   TIGR02521 106 GtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesl 172
                 G+F +  ++y +A + +++    +  ++   +y N+glc ++ +  + a   ++++l ++ +++++ 
  MMETSP1174-20130828|8332_1 557 GRFYYGVRQYASALRFYKESS--ESIGEHHVTYHNMGLCHYSMNSPKTAIGFFNKSLTLNSSYAKAA 621
                 889999999999998888754..55778889******************************999875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   9.1e-06     0.019     132     204 ..     555     628 ..     547     641 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.1e-06
   TIGR00990 132 ekGnkayrnkdfdkaielyskall.lkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranay 204
                 e G  +y+ +++  a+ +y+ + + + e  v y n+  c+ ++   +  +    ++l l++ y ka   r + +
  MMETSP1174-20130828|8332_1 555 EIGRFYYGVRQYASALRFYKESSEsIGEHHVTYHNMGLCHYSMNSPKTAIGFFNKSLTLNSSYAKAASWRDKVQ 628
                 56778899***********9876537899************************************998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:01.27
# Mc/sec: 735.81
//
Query:       MMETSP1174-20130828|8333_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-159  529.8   5.7   2.2e-159  529.6   3.9    1.0  1  TIGR02361 dak_ATP: dihydroxyacetone kinase
   1.2e-100  334.6   0.5   1.6e-100  334.2   0.3    1.1  1  TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit
      4e-72  240.9   0.0    5.3e-72  240.5   0.0    1.2  1  TIGR02362 dhaK1b: probable dihydroxyacetone kinase DhaK1b subunit
    3.1e-24   83.6   0.9    6.4e-24   82.6   0.6    1.5  1  TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit


Domain annotation for each model (and alignments):
>> TIGR02361  dak_ATP: dihydroxyacetone kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.6   3.9  2.1e-162  2.2e-159       1     582 [.      15     585 ..      15     586 .. 0.92

  Alignments for each domain:
  == domain 1    score: 529.6 bits;  conditional E-value: 2.1e-162
   TIGR02361   1 kkfvndaeelvedalkglvaanpe.lqllesekvvlrkdlk.ekkkkvslisGGGsGHEPahagfvGkglLtaavaGevFaSPstkqilaaikavvesgekGtLlivkNYTGDvLnFGLaaEkakaeGvkvelvvvgDDvsvgkkkggkvgrRglagtvlvhKiaGaaAaegssLeevakvakavaenlvtigasLdhchvPgkaeaeeelkedevElGlGiHnEpGvkrispipiedlvvkllkklldes.dedrsyvkleegdevvllvnnlGgvsnlelgiiaeevveqlaeekykikpvrilsgtfmtsLdgkgfsitllnvteagg.sildlldapteaagwpvaaaskleaeekeeeksseesekieekeaksskvkvdkekvekvleagvkalleaepkltklDtvvGDGDcGstlargaeailealkskklelddaaellaeisdvveekmgGtsGaLysiflsalaqslkeka...skkkevteealaaalkaalealskYtkAraGdrTliDaLapfvealeaskdelekavkaaekgaeaTkklkaklGRasYvsseelkekvpDpGAvglaallkgl 582
                 kkf+n ++ +ve++++g++a+ ++ l  l+   v+l+++ +  k+++v+l+sGGGsGHEPahag++G g+Ltaav G vFaSPst ++laa++a    g +G+L+ivkNYTGD++nFG aa +a+aeG+ ve+vvv+DD+++++ k g+ g Rg+agtv vhK+aGaaA++g +L+ev+++a++va+++ t+g+++ +c+vPg   ++ +l+++ +E+GlGiH+EpG++++   p+ +lv+++++ + ++     rs v+  +   v+l+vnnlGg++n+el+++a++++e+l+++    +pvr+++g fmtsL+++g+s+++l ++   g  il+ ld+ t+a+ w v +++++ +  k +  +++e     ++e+   +v +++e v++++ a++++l ++ep lt++D+v+GDGDcG+t++rga a++  l   +l   +a+ +  e+++ v  +mgGtsGaL+ i ++a + +l e+    +++++ ++  ++ a +a+++a+s  ++A+ G rT++DaL+p++++l  + +  e+a+ aae+ga+aT +++  +GR+ Yv  + l  +vpDpGA ++a  ++++
  MMETSP1174-20130828|8333_1  15 KKFINGPNLVVEEMVSGTCAVHSDqLVRLDGFTVLLHRNIDtIKENQVTLLSGGGSGHEPAHAGYIGDGMLTAAVLGGVFASPSTTSVLAALRAIG--GSHGVLMIVKNYTGDRINFGQAALQARAEGIIVEMVVVADDCALPEGK-GVTGGRGVAGTVFVHKVAGAAAQRGLPLAEVTAIARRVAASVRTLGTAMTTCTVPGTLPST-RLDDETIEVGLGIHGEPGITQSVWKPALELVKQIVDVVHQRMpPPHRSTVESGKPRPVALMVNNLGGTPNMELYVVAHNALEYLRQQ--GLEPVRCMVGPFMTSLEMQGVSLSVLPLDVEDGkMILERLDMATSAPSWVVPSTTEMLTPLKPSGGPTNEI----QTES--HGV-LSPEIVAAMI-AACDELEASEPRLTAWDQVAGDGDCGITVQRGAVAVKAILP--SLCGRSASSAYGEMAEAVAGSMGGTSGALLEIAFRAGRLHLIEQDrreDEGNSTQKVDYVGAFSAGVQAISTIGGAERGMRTMLDALMPAADELLSTGS-WEAATRAAEEGADATTTMEGLAGRSNYVNAQLLM-TVPDPGAKAVAIAMRAA 585
                 79****************99877658899998899998888678899**********************************************888..78**********************************************.5*********************************************************999.9*************************99999999999998762579*****************************************..59************************9988555599***************98888777777777777663....3323..333.4677777766.78**************************************9..8999999******************************999988775433444556667899**************************************.******************************9876.7**********999885 PP

>> TIGR02363  dhaK1: dihydroxyacetone kinase, DhaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.2   0.3  1.6e-103  1.6e-100       2     316 ..      15     338 ..      14     355 .. 0.93

  Alignments for each domain:
  == domain 1    score: 334.2 bits;  conditional E-value: 1.6e-103
   TIGR02363   2 kklindkedvveemleGlvkahpelvekvedekvivrkekkv..kgkvalvsGGGsGhePahaGfvgeGmLdaavaGevftsPtpdkileaikavdqgeGvllivknytGdvlnfemaaelaeaegikvekvvvdddvavedslytagrrGvagtvlvekivGaaaekGasLeevkelaekvveetksigvalkaatvpaaGkpsfeladdelelGvGihgepGirreklksadeiaeelldklleele......lqkg..devivlvnglGatpllelyvllkevqekleekglevartlvGnyvtsldmaGvsltllkvdeel 316
                 kk+in ++ vveem++G  + h++++ ++++ +v+ +++ ++  +++v+l+sGGGsGhePahaG++g+GmL+aav G vf+sP++  +l+a +a+   +Gvl+ivknytGd +nf  aa  a aegi ve+vvv dd a  + +  +g rGvagtv+v+k++Gaaa++G  L+ev+++a++v  +++++g a++++tvp +  ps  l+d+ +e+G+GihgepGi +   k a e++++++d + + +       +++g    v+++vn+lG+tp +elyv+ ++  e l+++gle  r +vG ++tsl+m+Gvsl++l +d e 
  MMETSP1174-20130828|8333_1  15 KKFINGPNLVVEEMVSGTCAVHSDQLVRLDGFTVLLHRNIDTikENQVTLLSGGGSGHEPAHAGYIGDGMLTAAVLGGVFASPSTTSVLAALRAIGGSHGVLMIVKNYTGDRINFGQAALQARAEGIIVEMVVVADDCALPEGKGVTGGRGVAGTVFVHKVAGAAAQRGLPLAEVTAIARRVAASVRTLGTAMTTCTVPGT-LPSTRLDDETIEVGLGIHGEPGITQSVWKPALELVKQIVDVVHQRMPpphrstVESGkpRPVALMVNNLGGTPNMELYVVAHNALEYLRQQGLEPVRCMVGPFMTSLEMQGVSLSVLPLDVED 338
                 9******************************9998877766544789********************************************************************************************************************************************************86.6999***************************************998777766644445589*******************************************************9997653 PP

>> TIGR02362  dhaK1b: probable dihydroxyacetone kinase DhaK1b subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.5   0.0   5.2e-75   5.3e-72       2     311 ..      17     337 ..      16     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: 240.5 bits;  conditional E-value: 5.2e-75
   TIGR02362   2 ilnekqelvsqaikgiaaarpk.lvqlkdlpviydktld...dqliPilsGGGsGhePahlGyvGeGmlsaaisGdvfvPPtaqdileairfldrgkgvfliiknfeadleefsqaeeqarkegrdikyiivaddisvesekfkkrrrGvaGtvllhkilGaaakeGasldeleelalalvtnlatlGvaaksaslpeqseplfdleegeisyGiGihGeeGyrkepfvsserlavelvnklklkf........rwqeddayillvnnlGgttkleqlvfandvrellaledlkldfikvGklltsldmkGlsltllrlkde 311
                  +n+++ +v++++ g  a +++ lv+l+  +v+ ++++d   ++++ +lsGGGsGhePah Gy+G+Gml+aa+ G vf  P+++ +l+a+r +   +gv++i+kn++ d  +f qa  qar+eg+ +++++vadd ++ + k  +  rGvaGtv++hk+ Gaaa++G  l+e++ +a  ++ ++ tlG a+++ ++p+   p+  l+++ i  G+GihGe+G  +  +  + +l +++v+ ++ ++        +  +    +l+vnnlGgt+++e +v a +  e+l  ++l+     vG ++tsl+m+G+sl++l l  e
  MMETSP1174-20130828|8333_1  17 FINGPNLVVEEMVSGTCAVHSDqLVRLDGFTVLLHRNIDtikENQVTLLSGGGSGHEPAHAGYIGDGMLTAAVLGGVFASPSTTSVLAALRAIGGSHGVLMIVKNYTGDRINFGQAALQARAEGIIVEMVVVADDCALPEGKGVTGGRGVAGTVFVHKVAGAAAQRGLPLAEVTAIARRVAASVRTLGTAMTTCTVPGT-LPSTRLDDETIEVGLGIHGEPGITQSVWKPALELVKQIVDVVHQRMppphrstvESGKPRPVALMVNNLGGTPNMELYVVAHNALEYLRQQGLEPVRCMVGPFMTSLEMQGVSLSVLPLDVE 337
                 68999999******998887652788999888888765433389**************************************************************************************************9999***************************************************96.7999*************************999999999998766542221110034455679********************************999*****************99865433 PP

>> TIGR02365  dha_L_ycgS: dihydroxyacetone kinase, L subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.6   6.3e-27   6.4e-24       5     193 ..     393     584 ..     389     587 .. 0.85

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 6.3e-27
   TIGR02365   5 lkklaelveenkeyLteLDraiGDgDHGiNlarGfsevkekleklkeksiqeilkkvamaLiskvGGAsGplyGtaflkaskalkdke......eildaeelaelleaglegvkarGkaelgeKtmvDvlapavealkkaveekealaeveekakeaaeatkdlvAtkGRAsylgersi.GhiDPGatSsvlllea 193
                 + ++++++e+++ +Lt  D+  GDgD Gi ++rG  +vk+ l +l  +s ++ + ++a a+  ++GG sG+l+  af +    l +++      +++++ +   +++ag++++++ G ae+g +tm+D+l+pa++ l +    + + ++++ +a+e+a+at+++    GR  y+  + +    DPGa+++++ ++a
  MMETSP1174-20130828|8333_1 393 MIAACDELEASEPRLTAWDQVAGDGDCGITVQRGAVAVKAILPSLCGRSASSAYGEMAEAVAGSMGGTSGALLEIAFRAGRLHLIEQDrredegNSTQKVDYVGAFSAGVQAISTIGGAERGMRTMLDALMPAADELLS----TGSWEAATRAAEEGADATTTMEGLAGRSNYVNAQLLmTVPDPGAKAVAIAMRA 584
                 55678999********************************************************************986554443322011101333444556789*****************************9997....788899999**********************999761567******9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.48
# Mc/sec: 1647.11
//
Query:       MMETSP1174-20130828|8339_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1434.04
//
Query:       MMETSP1174-20130828|8340_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1132.33
//
Query:       MMETSP1174-20130828|8342_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-17   61.7   0.0    1.1e-17   61.7   0.0    1.0  1  TIGR00617 rpa1: replication factor-a protein 1 (rpa1)


Domain annotation for each model (and alignments):
>> TIGR00617  rpa1: replication factor-a protein 1 (rpa1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.6e-21   1.1e-17      19     104 ..      19     104 ..       2     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.6e-21
   TIGR00617  19 tgvptepvlQvldlkkinseqss...eryrilisdgiqkskamlatqlnslvregelqegtivrltkfvvnvvgkegkkvlivselevv 104
                      +pv+Q+ldl++i +++ +   +ryr++isdg  + +amlatq+n+lv +g+l+++++vrl++f vn++++++kk++i+  ++v 
  MMETSP1174-20130828|8342_1  19 G---FSPVVQILDLRQIPGKAGAsgnTRYRVIISDGEWHYAAMLATQMNNLVDDGRLKNLALVRLNDFLVNTIQQQKKKIVILLRVDVE 104
                 3...789**********9876555679********************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|8344_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|8346_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.4   7.7      0.021   10.3   5.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.05   11.7   6.9      0.057   11.6   4.8    1.0  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
       0.39    7.6   6.1        0.4    7.6   4.2    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.4   1.5e-05     0.021     417     481 ..      11      75 ..       2      77 .] 0.51

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.5e-05
   TIGR02168 417 erlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqk 481
                 e +++eie+l++ +eea+a ++++q++++ele++le + e + r   +l+ ++++ ee e+a+++
  MMETSP1174-20130828|8346_1  11 EDQRKEIEDLRHGFEEASATRDAVQGRVAELEAQLERASELETRNHGELAAARQRHEETESAVKQ 75 
                 23444555555555555555555555555555555555555555555555555555555555444 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.8   4.2e-05     0.057      17      79 ..      13      75 ..       9      77 .] 0.94

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
   TIGR03495 17 qsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaq 79
                q+++++++r+ +e+a+++++a q  +++ ++qle++++   rn+ + a+ rq  +++e + +q
  MMETSP1174-20130828|8346_1 13 QRKEIEDLRHGFEEASATRDAVQGRVAELEAQLERASELETRNHGELAAARQRHEETESAVKQ 75
                678999*************************************************99998876 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.2   0.00029       0.4      21      80 ..      11      70 ..       3      77 .] 0.50

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00029
   TIGR01554 21 dekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeake 80
                +++++e+e+ +  ++++ a  d++++++++le++++++++ e ++ ++ +++++ +e+ e
  MMETSP1174-20130828|8346_1 11 EDQRKEIEDLRHGFEEASATRDAVQGRVAELEAQLERASELETRNHGELAAARQRHEETE 70
                455555666666666666666666666666666644444444444333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.26s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 216.24
//
Query:       MMETSP1174-20130828|8348_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.26s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|8349_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.23s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 463.37
//
Query:       MMETSP1174-20130828|8353_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|8352_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.32s 00:00:00.78 Elapsed: 00:00:00.54
# Mc/sec: 1542.32
//
Query:       MMETSP1174-20130828|8359_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1174-20130828|8360_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.29s 00:00:00.57 Elapsed: 00:00:00.69
# Mc/sec: 617.86
//
Query:       MMETSP1174-20130828|8358_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   13.9   0.1     0.0074   13.4   0.1    1.2  1  TIGR01245 trpD: anthranilate phosphoribosyltransferase
  ------ inclusion threshold ------
      0.034   12.5   1.9       0.31    9.4   0.3    2.6  3  TIGR01673 holin_LLH: phage holin, LL-H family


Domain annotation for each model (and alignments):
>> TIGR01245  trpD: anthranilate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.6e-06    0.0074       7      73 ..      61     128 ..      54     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.6e-06
   TIGR01245   7 nkdLseeeaeqlmkeimsgeasdaqiaAilvalrvkget...eeeiaglakalrekakkvekeeseelvD 73 
                 + +Ls++e e+lmk+i++++++daqi  i+ +l   g +   ++e   +++ + ++ ++ ek  +ee+ D
  MMETSP1174-20130828|8358_1  61 SGTLSKNELETLMKKILKNRITDAQIENIIKVLDKDGDDsisFDEFFKFVHGISDNEDEQEK--AEEISD 128
                 5689*******************************998611156666666666666665554..466655 PP

>> TIGR01673  holin_LLH: phage holin, LL-H family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00015      0.31      45      97 ..      41      90 ..      28      95 .. 0.84
   2 ?    1.1   0.0     0.058   1.2e+02      54      93 ..     112     150 ..     106     166 .. 0.52
   3 ?   -1.3   0.0      0.31   6.3e+02      56      77 ..     176     196 ..     169     198 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
   TIGR01673 45 dklakaavsa.veqaekesgkGaeKkeqafklikevlkkaklpklsdaqiegai 97
                +kl k  v+  +++  +e+++G+  k++   l+k++lk+    +++daqie  i
  MMETSP1174-20130828|8358_1 41 QKLKKKKVWLeIFKIMDEDDSGTLSKNELETLMKKILKN----RITDAQIENII 90
                55666666654789999**********************....88999999876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.058
   TIGR01673  54 aveqaekesgkGaeKkeqafklikevlkk...aklpklsdaqi 93 
                  + ++e+e++    K e+    i +++++   a l    da+i
  MMETSP1174-20130828|8358_1 112 GISDNEDEQE----KAEEISDAIFDIIDQpdpAALESDPDAEI 150
                 4555555555....66666666655555411144444444444 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.31
   TIGR01673  56 eqaekesgkGaeKkeqafklik 77 
                 ++  +e+g+G+  ke+ f+l++
  MMETSP1174-20130828|8358_1 176 KDI-DEDGDGKLNKEEFFQLLQ 196
                 444.456779999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      234  (0.0570453); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.45s 00:00:00.94 Elapsed: 00:00:01.38
# Mc/sec: 196.07
//
Query:       MMETSP1174-20130828|8361_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.0   0.7      0.072   10.0   0.0    2.1  2  TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00718  sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.011        46     144     177 ..      82     115 ..      75     121 .. 0.88
   2 ?   10.0   0.0   1.8e-05     0.072      33     162 ..     128     257 ..     104     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.011
   TIGR00718 144 ltaiaiGfvvakyasiaGaeGGcqaevGsasama 177
                 ++ i+ G+ v++y   aGa+ G  a   sa  m 
  MMETSP1174-20130828|8361_1  82 FAEIGAGQEVSRYFLRAGAAAGTVARSVSAYDMK 115
                 778999*******************999998885 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 1.8e-05
   TIGR00718  33 ktkeeirkkldavldvmeaavqknlesvvsetklidGdakklqeyirsGkslvGdllldavakavatsevnaamGkivaaptaGsaGvvpatlvavkeklnfdreqiirflltaiaiGfvvakyasiaGa 162
                  t+e +++ +++  + +e + +     +   + +    a k +   r   + +G +  +     ++t  + a m    a     + Gv+ a lv    k + d ++ii+ l++ i  G +  +   + Ga
  MMETSP1174-20130828|8361_1 128 VTQERMMQMIEQEYKEVEGTLREVKGPDCRFFSFASTIAAKAYMSDRECEAYIGIMYQKEAGAELSTVWLHARMTDSTAELQGDALGVLGANLVYLVSKAEHDEKTIIKNLMADINPGRLTVNWVGFEGA 257
                 4677777777777777777666666667777778888899999999999999999999999999***************9999999**************************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 1354.62
//
Query:       MMETSP1174-20130828|8363_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.34s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 544.05
//
Query:       MMETSP1174-20130828|8362_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   25.8   0.0    6.4e-07   25.4   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.4e-05   21.2   0.0    6.1e-05   20.4   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.1e-10   6.4e-07      86     185 ..     110     209 ..      86     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.1e-10
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                  q L  l   h +  +hRD+kP+n ++     ++  +++DFG++    + +  ++     ++++ G+  Ya+ +   g     + Dl + G +++  + G
  MMETSP1174-20130828|8362_1 110 DQLLSRLEYVHTKSFIHRDVKPDNFLIGLGKRQNVIHIIDFGLAKKYRDPRSHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRG 209
                 4999***********************************************999999999999********98888888788888888888777665555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-08   6.1e-05      96     142 ..     109     159 ..      45     165 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-08
   TIGR03724  96 lkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkskev 142
                 + ++   +  +H + ++h D+ + N+++     ++ + +iDfGL+kk ++ 
  MMETSP1174-20130828|8362_1 109 ADQLLSRLEYVHTKSFIHRDVKPDNFLIGlgkrQNVIHIIDFGLAKKYRDP 159
                 34444556679****************95444477789*******997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1176.90
//
Query:       MMETSP1174-20130828|8372_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|8366_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.34s 00:00:00.58 Elapsed: 00:00:00.49
# Mc/sec: 684.19
//
Query:       MMETSP1174-20130828|8376_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|8374_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 996.08
//
Query:       MMETSP1174-20130828|8378_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|8380_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.9   0.0    2.3e-06   25.0   0.0    1.4  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.5e-10   2.3e-06      84     216 ..      13     154 ..       6     162 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 5.5e-10
   TIGR00065  84 GrkaAeeskdeikkllegadlv...fitaGlGgGTGTGa.aPvvakiakel...giLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk..lplkeafkvadevlvkavkgiselItkpglinvDF 216
                 G+++ ++  d ++k+ e+ d      +t  +GgGTG G  +  ++ki +e     + t +v+  P   +      +A+  +++L + +D    ++N+ l +++ +  + ++  +   ++++  a+ g +  +  pg++n D 
  MMETSP1174-20130828|8380_1  13 GAELIDSVLDVVRKEAESCDCLqgfQLTHSMGGGTGSGMgTLLISKIREEYpdrVMTTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRtlKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDL 154
                 777777778888888888887533248999********636789***998533145678*******************************************98875567789**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1205.27
//
Query:       MMETSP1174-20130828|8386_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.1   0.1      0.032   11.0   0.0    1.0  1  TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit


Domain annotation for each model (and alignments):
>> TIGR02083  LEU2: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.9e-06     0.032     281     322 ..       4      44 ..       1      49 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.9e-06
   TIGR02083 281 eideaekeeikidqvvigsctngrledlrlaaeilkgkkvak 322
                 ++++ e ee+ ++ v  g  t  rl + r  a+ilk+k   k
  MMETSP1174-20130828|8386_1   4 DVSDSE-EEVPVQVVATGDITRNRLREWRNEAQILKDKIARK 44 
                 677777.89***99***********************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 255.98
//
Query:       MMETSP1174-20130828|8384_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|8382_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1550.87
//
Query:       MMETSP1174-20130828|8381_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 180.62
//
Query:       MMETSP1174-20130828|8387_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-08   30.8  10.6       0.21    9.9   0.2    6.9  8  TIGR03905 TIGR03905_4_Cys: uncharacterized protein TIGR03905


Domain annotation for each model (and alignments):
>> TIGR03905  TIGR03905_4_Cys: uncharacterized protein TIGR03905
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.011        46      15      37 ..      82     103 ..      78     125 .. 0.85
   2 ?    0.7   0.0     0.038   1.6e+02       5      38 ..     138     170 ..     134     182 .. 0.79
   3 !    5.9   0.1   0.00091       3.7       5      36 ..     182     212 ..     178     219 .. 0.86
   4 !    7.8   0.0   0.00023      0.95       4      38 ..     247     280 ..     244     293 .. 0.81
   5 !    9.9   0.2   5.1e-05      0.21       3      39 ..     290     325 ..     288     336 .. 0.82
   6 !    6.3   0.1   0.00067       2.7       4      50 ..     313     356 ..     310     366 .. 0.81
   7 ?    0.9   0.0     0.032   1.3e+02       6      32 ..     337     363 ..     333     378 .. 0.86
   8 !    2.8   0.0    0.0084        34       9      38 ..     362     390 ..     357     396 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
   TIGR03905  15 idiegdkvkkvkflgGCdGnLka 37 
                 +++ g kvk+v  lg Cd nL++
  MMETSP1174-20130828|8387_1  82 LNLRGTKVKDVSALGACD-NLHT 103
                 678999***********9.6655 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.038
   TIGR03905   5 tkGvCskkiqidiegdkvkkvkflgGCdGnLkai 38 
                 + G C    ++ + + kv++v  l  C+ nL+++
  MMETSP1174-20130828|8387_1 138 ALGACRILFKLTLGSTKVTDVSALRACN-NLNTL 170
                 56889999999999*************7.77665 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.00091
   TIGR03905   5 tkGvCskkiqidiegdkvkkvkflgGCdGnLk 36 
                   G C +  ++++ + kv +v  lgGC  nL+
  MMETSP1174-20130828|8387_1 182 DLGACCNLHTLELVSAKVIDVSALGGCS-NLH 212
                 5699***********************6.665 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.00023
   TIGR03905   4 stkGvCskkiqidiegdkvkkvkflgGCdGnLkai 38 
                 st G Cs   ++++++ kv++v  lg C  nL+ +
  MMETSP1174-20130828|8387_1 247 STLGACSSLHTLNLHDTKVRSVSALGACS-NLHRL 280
                 789*************************6.66554 PP

  == domain 5    score: 9.9 bits;  conditional E-value: 5.1e-05
   TIGR03905   3 ystkGvCskkiqidiegdkvkkvkflgGCdGnLkais 39 
                  s+ G Cs+  +++++g kv +v  lg C GnL+++ 
  MMETSP1174-20130828|8387_1 290 VSALGACSNLHTLNLNGTKVIDVSALGAC-GNLHTLE 325
                 56789************************.9999874 PP

  == domain 6    score: 6.3 bits;  conditional E-value: 0.00067
   TIGR03905   4 stkGvCskkiqidiegdkvkkvkflgGCdGnLkaiskLveGmkvedv 50 
                 s+ G C +  ++++ + +vk+v +lg C GnL+ +   + G kv dv
  MMETSP1174-20130828|8387_1 313 SALGACGNLHTLELISVQVKDVSVLGAC-GNLHKLD--LYGTKVRDV 356
                 6789999999****************99.9998775..456666665 PP

  == domain 7    score: 0.9 bits;  conditional E-value: 0.032
   TIGR03905   6 kGvCskkiqidiegdkvkkvkflgGCd 32 
                  G C +  ++d+ g kv++v  l  C 
  MMETSP1174-20130828|8387_1 337 LGACGNLHKLDLYGTKVRDVSALRACR 363
                 588999999999999999999998885 PP

  == domain 8    score: 2.8 bits;  conditional E-value: 0.0084
   TIGR03905   9 CskkiqidiegdkvkkvkflgGCdGnLkai 38 
                 C    ++d+ g +v++v  lg C GnL+a+
  MMETSP1174-20130828|8387_1 362 CRSLHTLDLYGTRVTDVSALGDC-GNLHAL 390
                 6666689****************.9**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.64
# Mc/sec: 1084.79
//
Query:       MMETSP1174-20130828|8390_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.1   3.0        0.6    7.3   0.3    2.2  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3   0.00015       0.6      24      69 ..       9      57 ..       2      63 .. 0.89
   2 ?    6.2   0.1   0.00031       1.3       5      57 ..      89     148 ..      84     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00015
   TIGR00950 24 rrlifallllLpllrlr...nslkrllrllllgalqlgvfyvllflavk 69
                +rl+ al++ L +++ +    +lk++l+l+++ a +l++f++++ +a  
  MMETSP1174-20130828|8390_1  9 VRLPHALIMTLLFSKKKsiqSKLKDILKLAFVHARNLALFVASYKAALL 57
                799***********999999889*******************9998876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00031
   TIGR00950   5 gvvikellesqlplyfavlrrlifallllLpllrlr.......nslkrllrllllgalql 57 
                 ++v +++   +   +  v+ r+++ ll lL+ ++ +        ++ +++++++ ga+  
  MMETSP1174-20130828|8390_1  89 YFVWGQYSSVNYQISLYVFSRVTVSLLRLLARKKFKpfesmtfTQVYPWGSAMVWGAVMY 148
                 8999999999*********************99999999999988999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.24s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 477.56
//
Query:       MMETSP1174-20130828|8391_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 807.46
//
Query:       MMETSP1174-20130828|8397_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|8398_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|8401_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|8406_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079    8.9   4.0      0.092    8.7   2.8    1.0  1  TIGR01005 eps_transp_fam: exopolysaccharide transport protein family
       0.83    7.8   7.8        1.1    7.4   5.4    1.4  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
        1.4    5.8   8.8        1.3    5.8   6.1    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01005  eps_transp_fam: exopolysaccharide transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.8   6.8e-05     0.092     323     378 ..       4      59 ..       2      61 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 6.8e-05
   TIGR01005 323 sslrelkaqiaeelqkltksykneaevaqareeslskkvnslkakskdaseqevdl 378
                  ++++l+ ++++e++ l ++++++ e a+a +++ +++++ lk+    +++++ +l
  MMETSP1174-20130828|8406_1   4 QKRAQLEDKRQKEATSLQAALLKQDEEAKAFSDKEREQIERLKREIGGLAQKRAQL 59 
                 57999**************************************9998888877776 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.4   0.00079       1.1      47      90 ..       7      48 ..       1      59 [. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00079
   TIGR03495 47 nqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlre 90
                +qle   ++ k+  + qa+L +q ++a+a + + +++ierL+re
  MMETSP1174-20130828|8406_1  7 AQLED--KRQKEATSLQAALLKQDEEAKAFSDKEREQIERLKRE 48
                44443..23344456699*************************9 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.1   0.00099       1.3      10      57 ..       4      58 ..       1      62 [] 0.44

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00099
   TIGR01554 10 elakelkkltedekeeeaeeekkekda.......lkaeidkleaeierleeaaae 57
                ++ ++l+++ ++e  +++++  k++++        +++i++l+ ei  l +++a+
  MMETSP1174-20130828|8406_1  4 QKRAQLEDKRQKEATSLQAALLKQDEEakafsdkEREQIERLKREIGGLAQKRAQ 58
                4444444444444444444444444440000000555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      236  (0.0575329); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|8411_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    5.2  16.1        6.2    5.0  11.1    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
        6.9    4.4   9.7        7.6    4.2   6.7    1.2  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
        9.1    3.2  27.0        9.4    3.2  18.7    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  11.1    0.0045       6.2      17      81 ..       6      68 ..       2      71 .] 0.68

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0045
   TIGR03495 17 qsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqre 81
                q+ r r+a++ ++k e++++   +  ek++  l+++ ++a+r+++a+++L++ ++ a+  ++ re
  MMETSP1174-20130828|8411_1  6 QEDRARQAKEAFQKREQEAQDR-RSEEKRKLELKRIRIQADRERQAKEELQK-RERADDGANARE 68
                4445566666666665555544.44578899*******************75.555555555555 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.7    0.0056       7.6      37      78 ..      18      59 ..       3      70 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0056
   TIGR03927 37 Ekntellqgeetelekelftpeeqkkikkkkkkekkeqeelk 78
                 k++++ q+ ++e +++l+++ +  +++ +++++++ q++++
  MMETSP1174-20130828|8411_1 18 QKREQEAQDRRSEEKRKLELKRIRIQADRERQAKEELQKRER 59
                5778888889999888********************999876 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  18.7    0.0069       9.4     128     185 ..       5      67 ..       1      71 [] 0.32

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0069
   TIGR02794 128 aeeakakqaaEakakaeaeaKa...ekkakee...AakkaEeeakakaaaeakkkaEaeeakkk 185
                 + e +a+qa+Ea +k e+ea+    e+k+k e    + +a  e++ak++ +++ +a+   a+++
  MMETSP1174-20130828|8411_1   5 QQEDRARQAKEAFQKREQEAQDrrsEEKRKLElkrIRIQADRERQAKEELQKRERADD-GANAR 67 
                 2233333344442232222211112222222212234444444444444444444432.12222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       379  (0.092394); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1174-20130828|8414_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 918.85
//
Query:       MMETSP1174-20130828|8417_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-05   20.7   0.2     0.0035   15.1   0.0    2.0  2  TIGR02869 spore_SleB: spore cortex-lytic enzyme


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.5e-07    0.0035     156     187 ..      16      47 ..       5      51 .. 0.87
   2 !    4.5   0.0    0.0015         6     158     179 ..      56      78 ..      46      79 .] 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.5e-07
   TIGR02869 156 kavldainGwdPsggalyyfnpakatssWiws 187
                  av d  + +dPs g  y++n ++ +  W + 
  MMETSP1174-20130828|8417_1  16 MAVDDIEESLDPSTGCSYFYNKKTGATGWSYE 47 
                 578888899********************875 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0015
   TIGR02869 158 vldai.nGwdPsggalyyfnpak 179
                 ++ +i + +d s g  yyfn ++
  MMETSP1174-20130828|8417_1  56 AASSIeERVDESSGQTYYFNRDT 78 
                 33444146899*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|8419_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1174-20130828|8420_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|8422_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 613.11
//
Query:       MMETSP1174-20130828|8427_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 177.50
//
Query:       MMETSP1174-20130828|8430_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.24s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|8425_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 1355.30
//
Query:       MMETSP1174-20130828|8434_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 551.25
//
Query:       MMETSP1174-20130828|8435_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.28s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1330.04
//
Query:       MMETSP1174-20130828|8433_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.27s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|8438_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 1341.89
//
Query:       MMETSP1174-20130828|8436_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 1406.28
//
Query:       MMETSP1174-20130828|8443_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|8442_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-11   41.3   0.1    1.6e-10   38.8   0.1    1.9  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae
  ------ inclusion threshold ------
      0.031   11.3   2.0       0.43    7.6   0.0    2.5  3  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1     8e-14   1.6e-10      12      88 ..      26     105 ..      16     141 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 8e-14
   TIGR03677  12 dkaleavekaretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGl...e 88 
                 d   e+++ka     +++G  e +ka++r  akl  +a+d + +e    + alcee ++  v v++ + lG+ +Gl   +
  MMETSP1174-20130828|8442_1  26 DALKEVLKKALVHDGLRRGLHEGVKALDRHSAKLCCLAKDCDNPEYNKLVRALCEEGGVNLVMVETGKTLGEWCGLckiD 105
                 566789999999999************************************************************83331 PP

>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1     0.075   1.5e+02     110     144 ..      14      48 ..       2      55 .. 0.62
   2 ?    2.9   0.0    0.0056        11     105     149 ..      49      96 ..      42     103 .. 0.66
   3 ?    7.6   0.0   0.00021      0.43      99     134 ..     105     140 ..      99     142 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.075
   TIGR01508 110 kkgvevvkfgeervdLeklldaleskgvrrllveG 144
                 +  vev  +g  +   e l  al + g+rr l eG
  MMETSP1174-20130828|8442_1  14 EPEVEVEEMGVLDALKEVLKKALVHDGLRRGLHEG 48 
                 33466666666666666666677777777777776 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0056
   TIGR01508 105 veelekkgvevvkfgeerv..dLeklldal.eskgvrrllveGGGtLi 149
                 v+ l +++++   + ++ +  + +kl+ al e+ gv+ ++ve G tL 
  MMETSP1174-20130828|8442_1  49 VKALDRHSAKLCCLAKDCDnpEYNKLVRALcEEGGVNLVMVETGKTLG 96 
                 566666666655555443311567788777245689999999999885 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.00021
   TIGR01508  99 aeseekveelekkgvevvkfgeervdLeklldales 134
                 +e+ e v+ ++   + v+ fgee   L+ ll++l++
  MMETSP1174-20130828|8442_1 105 DENGEAVKVVRCSCAVVTEFGEETQALNILLEFLKK 140
                 578899****************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.24s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 608.85
//
Query:       MMETSP1174-20130828|8444_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.7   0.0       0.02   12.5   0.0    1.7  1  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     5e-06      0.02      67      94 ..      53      80 ..      36      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-06
   TIGR03684 67 elklekkvvvVDeGAvkfiinGAdvmap 94
                ++ ++ k  vVD+GA k +i+G + m+ 
  MMETSP1174-20130828|8444_1 53 KVAISSKSLVVDSGATKTLIKGNNFMKK 80
                566778999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1031.16
//
Query:       MMETSP1174-20130828|8447_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.25s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 295.98
//
Query:       MMETSP1174-20130828|8439_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-84  279.0   3.0    1.4e-83  278.3   2.1    1.3  1  TIGR03626 L3_arch: archaeal ribosomal protein L3
    6.7e-09   33.7   1.0    6.7e-09   33.7   0.7    2.7  4  TIGR03625 L3_bact: 50S ribosomal protein L3


Domain annotation for each model (and alignments):
>> TIGR03626  L3_arch: archaeal ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.3   2.1     7e-87   1.4e-83       2     331 .]      19     375 ..      18     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 278.3 bits;  conditional E-value: 7e-87
   TIGR03626   2 rprrGslafsPRkRakrivprirsWPevd..gevkllafagykvGmtHvvlvddrknsptegkevvvpvtvleaPplkvlairaYekdekgekvlaevwaeeldkelkrkltllkkedve...........ekleklkeklek..ekvedvrllvatqpklvtgvpkkkPevleiriggksveekleyalellgkeisvkdvfkeGelvDviavtkGkGfqGvvkRfgvkllkrkhkrkkkeRkvGtlgpwtpsrvrwtvpqaGqmGyhqRteynkrilkigedgee.............itpkgGfvnYGlvrndyvlikGsvpGpskRlivlReaiRpk..kkkvkepeityislesk 331
                 +pr+Gsl+f P+kR++++ +rir++P+ d  ++ +l af++yk+GmtHvv   dr+ s+++ kev+ +vt+le+Pp+ v+++  Y+++++g k+++ +wa++l++e kr++ +   + ++           e+ ++++e +++   + + +r++ +tq ++++ + +kk  v ei+++g s+e+k+eya +l+ +++s+++vf + e +D+ + tkG+G +Gvv R+gv+ l+rk++r    Rkv  +g+w+p+rv +tv++aGq Gyh+Rte+nk+i ++g +g++             itp gGf +YG+v++d+++ikG   G +kR i+lR+++ ++  +++ +++++++i ++sk
  MMETSP1174-20130828|8439_1  19 APRHGSLGFLPKKRTRHHRGRIRKFPKDDasKDCHLTAFMAYKAGMTHVVREVDRPGSKMHHKEVIDAVTILETPPIVVIGMVGYTETPQGLKSVSTIWASHLSEEAKRRFYKNWYHSKKkaftkyskqyaEAPDNIEEDVKRiiSDCTVLRIIAHTQISKIK-LRQKKAHVCEIQVNGGSIEKKVEYARSLFESSVSIDSVFAKDENIDICGATKGRGNEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVGFTVARAGQNGYHHRTEMNKKIYRMGAKGDKksaatdsdltqkgITPMGGFPHYGVVEEDWIMIKGCCVGVKKRCITLRKSMMAHssRAHLEDIQLKFIDTSSK 375
                 79*************************99767889*************************************************************************999764322222000000000002233344433331123445799********87.9*********************************************************************98765..5***************************************9988766777888889999************************************9987744788899999***99997 PP

>> TIGR03625  L3_bact: 50S ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.22   4.5e+02      51      95 ..      28      72 ..      23      91 .. 0.59
   2 ?   -0.8   0.1      0.12   2.4e+02      19      35 ..      84     100 ..      56     160 .. 0.57
   3 !   33.7   0.7   3.3e-12   6.7e-09      90     179 ..     210     297 ..     164     302 .. 0.74
   4 ?   -1.1   0.0      0.14     3e+02     181     201 ..     329     349 ..     327     350 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.22
   TIGR03625 51 gekkekkvnkpeaghfkkagveakrvlkefrveeaeelevgdeik 95
                  kk+++ ++    +f k + ++  +l+ f   +a  ++v +e++
  MMETSP1174-20130828|8439_1 28 LPKKRTRHHRGRIRKFPKDDASKDCHLTAFMAYKAGMTHVVREVD 72
                555666666666666666666666666666665555555555554 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.12
   TIGR03625  19 lvpvtvievepnvvvqv 35 
                 + +vt++e  p vv+ +
  MMETSP1174-20130828|8439_1  84 IDAVTILETPPIVVIGM 100
                 33678888777777765 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 3.3e-12
   TIGR03625  90 vgdeikv.dlfeegekvdvtgtskGkGfaGvikrhnfkggp.asHGsskshRapGSigqrqtpgrvfkgkkmaGhlGnekvtvqnLevvkvd 179
                   +++++ ++f++ e +d+ g +kG+G  Gv+ r++ ++ p ++H      R+   ig+ + p+rv      aG+ G +++t  n ++ ++ 
  MMETSP1174-20130828|8439_1 210 FESSVSIdSVFAKDENIDICGATKGRGNEGVVTRWGVTRLPrKTHR---GLRKVACIGAWH-PARVGFTVARAGQNGYHHRTEMNKKIYRMG 297
                 2345566579***************************997626774...47*******998.********************9999998875 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.14
   TIGR03625 181 eknlllvkGavpGakgslvlv 201
                 e+  +++kG   G k+  +++
  MMETSP1174-20130828|8439_1 329 EEDWIMIKGCCVGVKKRCITL 349
                 7889**********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1257.04
//
Query:       MMETSP1174-20130828|8448_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.29s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1172.19
//
Query:       MMETSP1174-20130828|8445_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.53
# Mc/sec: 1499.20
//
Query:       MMETSP1174-20130828|8451_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   13.3   0.2      0.024   11.8   0.1    1.8  2  TIGR03843 TIGR03843: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03843  TIGR03843: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.39   1.6e+03      23      39 ..     183     199 ..     173     200 .. 0.71
   2 !   11.8   0.1   5.9e-06     0.024     128     213 ..     299     393 ..     230     397 .. 0.73

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.39
   TIGR03843  23 eveldeeeaeavyKPva 39 
                  v+ ++++ +a++KP a
  MMETSP1174-20130828|8451_1 183 LVQCGDKNDRAIFKPAA 199
                 35568888899***975 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 5.9e-06
   TIGR03843 128 vhadeeelrrlavfDvlvNNaDRKggHvlegk...dg.rvygvDhgvtfhaeeKLRt.....vlWgwageplpeelledlerlaeelegelaeeL 213
                       e++rl v+D+ + N+DR gg +l ++   dg ++  +Dh   + + + L       v W  a+ p ++++ + +++l e+ + +l ++L
  MMETSP1174-20130828|8451_1 299 KRLPICEVHRLGVLDIRLFNTDRHGGNILLNTkaeDGiQLVPIDHEFILPQWDHLDEaefcwVDWPQASVPFTDDAKAYVAELDEARDVDLLRSL 393
                 555556899******************9975423333478999**99997766654312111667777888888888888888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1651.47
//
Query:       MMETSP1174-20130828|8456_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1201.80
//
Query:       MMETSP1174-20130828|8457_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.24s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 940.02
//
Query:       MMETSP1174-20130828|8460_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.53
# Mc/sec: 1138.09
//
Query:       MMETSP1174-20130828|8459_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.28s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1665.92
//
Query:       MMETSP1174-20130828|8467_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 698.77
//
Query:       MMETSP1174-20130828|8466_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-27   93.4   0.0    6.5e-27   92.2   0.0    1.4  1  TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00209  galT_1: galactose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   1.6e-30   6.5e-27      14     244 ..      24     278 ..      14     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 1.6e-30
   TIGR00209  14 rynpltdqwilvsphrakrpwqgqqeaaak..etkpaydpkcylcpgnkrvtgel...npd.yest......yvfkndfaalledtpaleksd.........drllkvq.sargesrvicfspdhsktlpelkaaelveivkswqeqtdelg..kkykyvqifenkgaamgcsnlhphgqiwansflpneveredrsqkeylaehksdllvdyvkrelaeksrvvvetesfiavvpywaiwpfetlllskkkvkr 244
                 r n  t++w++ +  r  rp q     +++  + +pa+dp+c +c gn   t       pd  +st       v +n f a+     + e++d            ++++  a g   v+  s  h+      +   l  +v++w ++    +   + k v  f+n+g + g s +hph q+ a+  +p +v+ ++++ ++++ +h+ + +++  ++el  + rv+ ++e+f+a vp+ ai pfet +l++   +r
  MMETSP1174-20130828|8466_1  24 RQNEATGDWVVYATERGNRPRQTIHSVPKQrsRDTPAHDPSCPFCRGNEAQTPPTlfeLPDpLDSTagawglRVVNNKFPAVDAACGDGEDDDafdypqltdACTINSEiPATGRHEVLIESSRHNYLSATESLDTLALLVRAWVARSIVAAedPRVKLVMCFKNQGGTAGASLIHPHSQLIALPLIPRQVSAQLHTARDFYVQHGKSAFANMARQELDAGTRVIEQNEHFLAFVPFAAICPFETWILPRPSYQR 278
                 78999*****************9988776511568**************99864312223312332222222699*******9988888888788887777422333332588999**********9999999999999*****9875444322789*******************************************************************************************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.27s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1108.71
//
Query:       MMETSP1174-20130828|8473_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.28s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 372.68
//
Query:       MMETSP1174-20130828|8472_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   23.1   0.0    1.7e-05   22.4   0.0    1.3  1  TIGR00235 udk: uridine kinase
     0.0003   17.7   0.0    0.00036   17.5   0.0    1.1  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0005   17.3   0.0     0.0005   17.3   0.0    1.2  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0013   16.5   0.0     0.0019   15.9   0.0    1.3  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0045   14.5   0.0     0.0057   14.2   0.0    1.2  1  TIGR00455 apsK: adenylylsulfate kinase
     0.0085   13.8   0.3      0.012   13.3   0.2    1.2  1  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0086   13.1   0.0     0.0089   13.1   0.0    1.1  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.021   11.2   0.0      0.024   11.0   0.0    1.2  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      0.029   11.2   0.1      0.057   10.2   0.0    1.4  2  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.7e-08   1.7e-05       5      36 ..     101     132 ..      97     134 .] 0.89

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.7e-08
   TIGR00235   5 ktiiigiaGasgsGkttvaekivellkkekiv 36 
                 ++i++giaG+ gsGktt+a+ i++ l +++i+
  MMETSP1174-20130828|8472_1 101 NAIVVGIAGGTGSGKTTLARAIRQGLPESEIA 132
                 469**********************9998886 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.9e-07   0.00036     148     172 ..     106     130 ..      81     132 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.9e-07
   TIGR02788 148 iisGgtgsgKTTflkalvkliPkee 172
                  i+GgtgsgKTT+ +a+ + +P+ e
  MMETSP1174-20130828|8472_1 106 GIAGGTGSGKTTLARAIRQGLPESE 130
                 379****************999976 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0005     139     158 ..     105     124 ..      40     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   TIGR02782 139 ilvvGGtgsGkttLanalla 158
                 + ++GGtgsGkttLa a+ +
  MMETSP1174-20130828|8472_1 105 VGIAGGTGSGKTTLARAIRQ 124
                 23689***********9865 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.2e-06    0.0019      21      46 ..     101     126 ..      78     132 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.2e-06
   TIGR00150  21 latvvlLkGdlGaGKttlvkgllkgl 46 
                  a+vv + G  G+GKttl +++ +gl
  MMETSP1174-20130828|8472_1 101 NAIVVGIAGGTGSGKTTLARAIRQGL 126
                 488999*****************998 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05    0.0057      14      47 ..      98     131 ..      86     134 .] 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR00455  14 kkqksvvlWltGlsgsGkstianalekkLeekgl 47 
                  + +++v+ ++G +gsGk+t+a a+ + L e+ +
  MMETSP1174-20130828|8472_1  98 DGMNAIVVGIAGGTGSGKTTLARAIRQGLPESEI 131
                 56788999*******************9988765 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   2.7e-05     0.012       1      21 [.     104     124 ..     104     129 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.7e-05
   TIGR00152   1 iigltGgigsGKstvakilkd 21 
                 ++g+ Gg gsGK+t+a+++++
  MMETSP1174-20130828|8472_1 104 VVGIAGGTGSGKTTLARAIRQ 124
                 79***************9986 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.9e-05    0.0089     181     198 ..     105     122 ..      42     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.9e-05
   TIGR03819 181 llvsGgtGsGkttLLsal 198
                 + ++GgtGsGkttL  a+
  MMETSP1174-20130828|8472_1 105 VGIAGGTGSGKTTLARAI 122
                 3489**********8887 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.3e-05     0.024     285     332 ..      72     124 ..      52     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.3e-05
   TIGR03269 285 vskryisvdrGvvkavdnvs.....levkekeifGlvGtsGaGkttlskilaG 332
                 v+ r +svd  ++ a+ +v+     ++ +++ + G+ G +G+Gkttl++ +  
  MMETSP1174-20130828|8472_1  72 VKPRSFSVDTHMMDALTEVTenpdiFDGMNAIVVGIAGGTGSGKTTLARAIRQ 124
                 6667889999999999888644334556678899**************98864 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   5.3e+02     142     162 ..      12      32 ..       9      43 .. 0.80
   2 ?   10.2   0.0   0.00012     0.057     131     171 ..      86     124 ..      76     130 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.2
   TIGR02525 142 feallpkaGlGlicGetGsGk 162
                 ++++ + aGl li+   G+G 
  MMETSP1174-20130828|8472_1  12 MQSFRRDAGLTLISISLGAGA 32 
                 678889999999999888885 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00012
   TIGR02525 131 dlkkmgiekdlfeallpkaGlGlicGetGsGkstllaaiyr 171
                  l+++  ++d+f+ +     +G i+G tGsGk+tl+ ai +
  MMETSP1174-20130828|8472_1  86 ALTEVTENPDIFDGMNA-IVVG-IAGGTGSGKTTLARAIRQ 124
                 57777788999998854.4455.7888*********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      253  (0.0616772); expected 82.0 (0.02)
Passed Vit filter:                       113  (0.0275475); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.24u 0.32s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 393.03
//
Query:       MMETSP1174-20130828|8474_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 411.50
//
Query:       MMETSP1174-20130828|8471_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 1737.86
//
Query:       MMETSP1174-20130828|8468_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-14   50.9   0.1      1e-09   35.9   0.1    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.3e-10   38.7   0.0    1.3e-09   35.4   0.0    1.9  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      3e-10   37.5   0.0    4.6e-07   27.0   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    8.4e-10   36.5   0.0    6.6e-05   20.5   0.0    2.0  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.6e-06   24.7   0.2     0.0003   17.2   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    8.5e-06   22.6   0.0    0.00099   15.8   0.0    2.0  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    8.1e-05   20.2   0.0      0.037   11.5   0.0    2.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.7e-12     1e-09     285     409 ..      22     150 ..      12     163 .. 0.69
   2 !   13.1   0.0   1.4e-05    0.0082      92     161 ..     165     230 ..     159     236 .] 0.59

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.7e-12
   TIGR01628 285 gvNlYvkNlddtvddekLre....lFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrql..sigspvigaanisgrhqaaqqqav 409
                  + +Y+ Nl++++ ++ Lr+    +F++fG+i+     +    k +g  ++cf + e+A++A+ +++g  +  kP+ +a+ + k +  a+    f  ++ + r+   + ++   +a++ s+++ +++ +++
  MMETSP1174-20130828|8468_1  22 SQTIYINNLNEKIKKQPLRKalysVFSQFGKIVEIVACR--GLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEkaPRAESEPTAMDTSASKISTPTPQI 150
                 567899999999999888874433589999997654333..357888899999999999999999999999999999999999999988888888654444444433455555566665555544444444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.4e-05
   TIGR01628  92 fvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyv 161
                 f +nL+++ +   L  +F+++     +++   + G  kg +f++f de sA +A++ l g  l   +   
  MMETSP1174-20130828|8468_1 165 FAQNLPEDCNDMMLSMLFKTYAGFKEVRM---VPG-KKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLA 230
                 56667777777777777776665544444...344.3557777777777777777777666666555544 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.2e-12   1.3e-09     292     490 ..      16     235 ..       8     236 .] 0.76

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2.2e-12
   TIGR01649 292 paasglgsVllvsnLeee.kvtp..dalFnlfgvYGdvervkilknk..ketalvemadpqqaqlalthLdkvklfgkklrvavSkqe..avql......pke.fqlddGlt........kDysesrlhRFkkpgsknknniypPsatLHlsNiPlsvsEedlkelfaekgvkvkafkvFpkdskmallelesveeAveaLialnnhqlkepnhlkvsfsk 490
                 +a  ++++ + + nL+e+ k +p  +al+ +f+++G +  +   +    +++a + + + ++a +a+  +++  +++k++++a Sk +  +v        ++e  + ++  +         D s s+    +    ++ +    Ps++L   N+P  +++  l  lf+     +k++++ p ++  a +e+ +   A  aL  l+ ++l+  ++l +sf+k
  MMETSP1174-20130828|8468_1  16 MADISPSQTIYINNLNEKiKKQPlrKALYSVFSQFGKIVEIVACRGLklRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKsdCVAKrdgtfvAREkRKREEKAPraeseptaMDTSASKISTPTPQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTY-AGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAK 235
                 556778889999999975222223379***********99988875412699*******************************9987522554311111122211222222222333445677777776665555667777789**************998888888654.5799********************************************98 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   7.8e-10   4.6e-07     218     343 ..      21     142 ..      12     163 .. 0.71
   2 !   10.8   0.0   6.4e-05     0.038     100     185 ..     142     223 ..     115     228 .. 0.64

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 7.8e-10
   TIGR01622 218 adlkLYvGnlhfnitEqeLrq....iFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddek 343
                 + + +Y+ nl   i  q Lr+    +F  FG+i  +   +   + + +G  +i F+  e a +A+ k+ G+    +++k+++   ++++sd+    k  ++f   e+   + +++  e    ++d +  k
  MMETSP1174-20130828|8468_1  21 PSQTIYINNLNEKIKKQPLRKalysVFSQFGKIVEIVACR---GLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAF---SKTKSDC--VAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASK 142
                 67889***********99885444499****996665444...5588***********************************...7777787..444444455555555555554444444444444333 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.4e-05
   TIGR01622 100 errekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAla.ltGqkl 185
                 +   +  ++ +    +   +   f+++l+   ++  l   F++ +  ++vr++  +     kG+a++EF d+ s   Al+ l G kl
  MMETSP1174-20130828|8468_1 142 KISTPTPQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGK-----KGLAFIEFTDEVSAGSALQgLHGFKL 223
                 23333333444444444455678999999999999999999999999999999875.....89999999999999999964666665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.6e-06    0.0044     271     348 ..      24     103 ..      12     109 .. 0.81
   2 !   20.5   0.0   1.1e-07   6.6e-05     239     344 ..     133     233 ..     106     236 .] 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.6e-06
   TIGR01661 271 cifvynlspdtde.....avlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                  i++ nl  + ++     a+  +f++fG ++++   r l   k +G +++     + a+ a++ + G+ + ++ ++++f  +k
  MMETSP1174-20130828|8468_1  24 TIYINNLNEKIKKqplrkALYSVFSQFGKIVEIVACRGL---KLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTK 103
                 57777777665541111145589*********9999999...99**********************************98765 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.1e-07
   TIGR01661 239 aaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg.nrvlqvsf 344
                  +a  +s   + + +  + + a++ a  +    +f  nl  d ++ +l  lf  +   ++v+++        kG +f+  t+   a  a++ l G++l+  ++l +sf
  MMETSP1174-20130828|8468_1 133 PTAMDTSASKISTPTPQILQAADLNA--TPSSILFAQNLPEDCNDMMLsMLFKTYAGFKEVRMVPGK-----KGLAFIEFTDEVSAGSALQGLHGFKLTpTQTLALSF 233
                 22333334444444445556666666..45689***************889************9988.....*************************97357888887 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0017      0.99     441     501 ..      47     101 ..      22     112 .. 0.69
   2 !   17.2   0.0   5.1e-07    0.0003     278     364 ..     143     224 ..     113     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0017
   TIGR01642 441 askyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafys 501
                 +s++G++++iv  r  k        G+ ++ +  v+ a  A+ +++G  F ++ + +af +
  MMETSP1174-20130828|8468_1  47 FSQFGKIVEIVACRGLKL------RGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSK 101
                 566666666666666333......3667778888888888888888888888888777754 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 5.1e-07
   TIGR01642 278 inlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklg 364
                 i  ++ + l ++         l+ +nLP d +d  +  L + +   k   ++        KG aF+e+ d   +  A+++L G+kl 
  MMETSP1174-20130828|8468_1 143 ISTPTPQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVP-----GKKGLAFIEFTDEVSAGSALQGLHGFKLT 224
                 4555554555555555566779********************99998888885.....369***********************986 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06   0.00099     234     346 ..      23     140 ..      10     163 .. 0.67
   2 !    5.6   0.0    0.0021       1.2      61     129 ..     164     228 ..     136     235 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-06
   TIGR01648 234 kilyvrnlmletteeiieks....fsefkpGa.ve....rvkkirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqaaaqslsqvydpasrslay 346
                 + +y+ nl  ++  + ++k     fs+f  G+ ve    r  k+r  a++ fe  e+a +am ++ G  +  +++ ++++k     + v  + ++   +++++ +++ +    +p+++ +++
  MMETSP1174-20130828|8468_1  23 QTIYINNLNEKIKKQPLRKAlysvFSQF--GKiVEivacRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTK--SDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSA 140
                 5678888888888888877543347777..542552222556***********************************999963..4445555555555555555555454444444444444 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0021
   TIGR01648  61 vfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrl 129
                 +f   +P d  +  l  lf +     e+r++    G  +G af+ f++ + a  a++ l+ + + p + 
  MMETSP1174-20130828|8468_1 164 LFAQNLPEDCNDMMLSMLFKTYAGFKEVRMV---PG-KKGLAFIEFTDEVSAGSALQGLHGFKLTPTQT 228
                 3444455555444455555555555555543...23.34566666666666666666666555555554 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0013      0.73     183     254 ..       8      84 ..       4     122 .. 0.70
   2 !   11.5   0.0   6.3e-05     0.037     109     184 ..     163     234 ..     130     236 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0013
   TIGR01659 183 yarpggesikdt....nlyvtnlprtitdd....qldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisa 254
                 y+  g e++ d      +y+ nl+  i  +     l ++f ++g+iv+    r     k rg a++ f+  e a  a++ 
  MMETSP1174-20130828|8468_1   8 YSPFGDEEMADIspsqTIYINNLNEKIKKQplrkALYSVFSQFGKIVEIVACRG---LKLRGQAWICFETVEAATHAMAK 84 
                 555566666654222257888888888765111145678888888887666654...46788888888888888877765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 6.3e-05
   TIGR01659 109 nlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvr.nkrlkvsya 184
                  l  + lp+d +d  l  lf+t       r++   k     g af++f+ e+ +  a++ l g  +   + l +s+a
  MMETSP1174-20130828|8468_1 163 ILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKK-----GLAFIEFTDEVSAGSALQGLHGFKLTpTQTLALSFA 234
                 467789************************987766.....89********************98752456777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 798.70
//
Query:       MMETSP1174-20130828|8479_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1174-20130828|8480_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.24s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 416.59
//
Query:       MMETSP1174-20130828|8476_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 1442.45
//
Query:       MMETSP1174-20130828|8487_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|8486_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   32.5   0.0    1.7e-08   32.1   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   4.2e-12   1.7e-08       5      58 ..     193     249 ..     191     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 4.2e-12
   TIGR02349   5 iLgvskdAseeei...kkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeek 58 
                 +Lg++ d ++++i   k+ +r l+k+ HPD+ +++++a e+f+e+++Ay  L d + 
  MMETSP1174-20130828|8486_1 193 LLGLDEDWKSDDIralKQRHRALVKTCHPDAFPDDPAATERFREVQDAYRLLMDASH 249
                 6788877777776444899***********************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1095.51
//
Query:       MMETSP1174-20130828|8489_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.22s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 538.66
//
Query:       MMETSP1174-20130828|8492_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 914.92
//
Query:       MMETSP1174-20130828|8497_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 646.05
//
Query:       MMETSP1174-20130828|8498_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|8504_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.7   0.0      0.014   12.3   0.0    1.1  1  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated


Domain annotation for each model (and alignments):
>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-06     0.014     266     321 ..     117     177 ..     102     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-06
   TIGR03099 266 lpevelileLGryLvaeaG.....iyvckvvdrkvsrgekflvtdGGlhhhlaasGnlGqv 321
                  +  +li+ +G y+v+eaG     + +++++++k s    +++ +GGl     +   + +v
  MMETSP1174-20130828|8504_1 117 YDLGSLIFAIGLYVVGEAGnlfhhVLLAQMRESKSSTSAPYVIPNGGLFEYFVSPHYFCEV 177
                 555689999**********77777789999******************8776666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 648.47
//
Query:       MMETSP1174-20130828|8500_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-124  414.7   0.0   1.8e-124  414.4   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
     3e-118  393.8   2.4   5.1e-118  393.0   0.3    1.8  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   1.5e-116  388.0   0.3     3e-114  380.4   0.0    2.0  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      7e-85  283.5   0.5    3.8e-84  281.1   0.0    1.9  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.9e-80  268.3   0.1    3.7e-80  267.9   0.1    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-75  253.4   2.2      2e-75  252.4   0.4    1.9  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-74  249.8   0.3    1.1e-72  243.3   0.1    2.1  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    8.6e-71  236.9   0.3    2.1e-69  232.3   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.9e-66  222.9   1.6    6.4e-66  221.2   0.0    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.9e-65  219.3   0.2    2.2e-65  219.0   0.1    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      9e-61  204.1   0.0      2e-60  202.9   0.0    1.5  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.3e-55  186.0   0.0    3.1e-55  185.6   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.5e-39  132.9   0.0    3.8e-39  132.3   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      1e-37  127.0   1.2    2.3e-37  125.9   0.0    1.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.1e-34  117.0   0.3    3.2e-34  116.5   0.2    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.1e-32  110.3   0.0    3.6e-32  109.5   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      3e-32  109.8   0.1    4.2e-32  109.3   0.1    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.1e-30  103.9   0.1      3e-30  103.4   0.1    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.7e-30  103.4   0.8    3.7e-30  102.9   0.5    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.1e-29  100.3   0.0    3.3e-29   99.7   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.7e-29   98.9   0.2    1.1e-28   98.2   0.2    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    9.3e-29   98.4   0.1    1.3e-28   97.9   0.1    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.9e-28   97.4   0.1    2.9e-28   96.8   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-28   97.3   0.1    3.6e-28   96.5   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-28   96.9   0.0    4.3e-28   96.2   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.9e-27   94.2   0.1    3.5e-27   93.4   0.1    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.8e-27   93.5   0.0    5.1e-27   92.6   0.0    1.4  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.2e-27   92.7   0.3      1e-26   91.8   0.2    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.2e-26   91.4   0.1    1.6e-26   91.0   0.1    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.3e-26   91.3   0.0    2.2e-26   90.6   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.7e-26   91.1   0.6    4.8e-26   89.6   0.4    1.7  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.1e-26   88.6   2.4    1.5e-24   83.5   0.0    2.6  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.4e-26   88.6   0.3    8.4e-26   88.6   0.2    1.6  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.1e-25   88.1   0.1    1.7e-25   87.4   0.1    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.8e-25   87.4   0.9    7.7e-25   85.4   0.6    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.9e-25   87.4   0.4    3.3e-25   86.6   0.3    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.3e-25   86.5   0.1    6.5e-25   85.9   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.3e-22   75.5   0.9    4.2e-21   73.0   0.0    2.5  3  TIGR00955 3a01204: pigment precursor permease
    1.4e-21   75.0   0.2    2.3e-21   74.3   0.1    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.6e-21   73.1   1.7    6.3e-19   65.7   0.7    1.9  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.5e-21   72.7   0.4    1.3e-20   71.7   0.1    1.6  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-19   67.9   0.2      2e-19   67.4   0.1    1.2  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.4e-19   67.0   0.0    7.5e-19   65.9   0.0    1.5  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      2e-18   64.7   0.6    3.2e-18   64.1   0.4    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.5e-17   61.3   0.1    5.1e-10   36.4   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.7e-17   61.6   0.0    3.1e-17   60.8   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.2e-17   61.3   0.1    6.3e-17   59.8   0.1    1.6  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.5e-17   59.6   0.2    9.2e-17   58.9   0.1    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.5e-17   59.6   0.1    1.1e-16   59.1   0.1    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.1e-16   58.2   0.0    1.4e-16   57.9   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.8e-16   56.6   0.2    1.4e-15   55.4   0.1    1.5  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.5e-16   55.8   0.1    2.2e-15   54.3   0.1    1.7  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.8e-15   54.9   0.4    4.2e-15   53.7   0.3    1.5  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-15   52.5   0.0    2.8e-15   52.1   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    3.8e-13   45.8   0.7    7.3e-10   34.9   0.1    2.1  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.5e-08   31.3   0.0    5.4e-08   29.5   0.0    1.7  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.3e-06   23.0   0.3    3.4e-05   20.1   0.1    1.9  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.4   0.0  2.4e-126  1.8e-124     144     700 ..     110     671 .]      26     671 .] 0.91

  Alignments for each domain:
  == domain 1    score: 414.4 bits;  conditional E-value: 2.4e-126
   TIGR00958 144 etadlllrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdks.vealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsg..tlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqL 700
                  +++++ rL +l  +d+++ll++l   ++  + e +i    g +++   + ++ +++ + ++ ll +l +  +++a l +  f  a++   +r+r   fks+l Qdi+F+d+ + G l   ls D s++++   +        +  + g li++l  S+r++lv+l+  P++         +++k +    e       ++ Ea+s+ rTV      +   s ++++l++  +   +++    ++   ++++ ++   l+  +G++l  +++v++ ++   ++  +  +  +   s   ++ l a  a+ ++F ++d  P +++s    l+p   +G +e + V+F+YP+rpd+p++kd +  +epG++ alVG sG+GKStv++lle++Y+P++G+vllDg+++++++ k+l+ +++lV qEPvlf+ s+ +Ni  G + ++d+ev aaakaanah F++++++ y+t+vge+G qlsgGqkqriAiARA++++P++L+LDeAtSALD+e+e+++q+     ++ak rt +++ahrLstv +ad i+v+  g++ve+Gth++L
  MMETSP1174-20130828|8500_1 110 GKQSVMNRLWRLQMSDWPYLLVGLTGAICQGICEPVIGMLFGLMLSGFYSAEDkIREKSDQVALLFVLLAFAMFFAVLAKWPFGAASSSFYKRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNVAGMLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAEE--LEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLVPPIDSSSsnGLKPPSCKGDLELRGVTFAYPTRPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAaldnLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 45569*****************************************999988879999**************************************************************************99999999999999*************************9877777777776655443333..345789****************************988777777777778888999*************************999888877777777776665555555555557789*********98765411689***********************************************************************************************************************************************************************************88888776666699**************************************98 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.54        39     552     575 ..       2      26 ..       1      27 [. 0.87
   2 !  393.0   0.3    7e-120  5.1e-118      48     561 ..     156     671 .]     143     671 .] 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.54
   TIGR02204 552 iveqGthaeLia.kggLyarlarLq 575
                 iveqGth+eL + ++g +a+l +Lq
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLLALQ 26 
                 9*********874689999999998 PP

  == domain 2    score: 393.0 bits;  conditional E-value: 7e-120
   TIGR02204  48 GfskeesellneafalllvvvlvlalatalrfylvsslG...ervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeL 561
                 Gf ++ ++++ e    + ++ ++la+a ++        G     +   +r   f+ +l  + af+d++  g + ++l+ d +l+  +   +    +  + ++ G l++l+  s ++++++l++ P++    ll+  + +k + +  ++l   ++ ++ea++ ++tv a + ++  +s +  a+ k  +   + + + +    ++ v+ + +  l+  +Ga     +++++ ++   v+  +++a s+g  s  l +   a  aa r++ l++  + i++ +++   p + +g++e+  v+fayP+rpd + +++ +++v+pG+t+alvG sG Gkst+++ll rfydPq G++lldGvd+r+l+ + lr+++ lv+q+++lfaas+++nir+G+  a+d+ev+aaakaa+a+ f++ +pe y+t++Gerg++LsGGqkqriaiara++kd  iL+LdeatsaLd+ese+ vq al++lmk   rtt+++ahrL+tv++ad i+v+ +GriveqGth+eL
  MMETSP1174-20130828|8500_1 156 GFYSA-EDKIREKSDQVALLFVLLAFAMFFAVLAKWPFGaasSSFYKRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNVAGMLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAEELE--ASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLVPPIDSSSSNGLKPPSCKGDLELRGVTFAYPTRPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 55555.344555555555566666666666655555555111456678999************************************9999999888888999*************************9888777777777777777764..5789************************9999988777666666666666666777777889999**********************************9998888999**************************************************************************************************************************************************************************************************************************732589********************************98 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0096      0.69     546     569 ..       2      26 ..       1      29 [. 0.88
   2 !  380.4   0.0  4.2e-116    3e-114       3     555 ..     116     671 .]     114     671 .] 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0096
   TIGR02203 546 iverGtheeLla.rnGlYasLhkiq 569
                 ive+Gth+eL +  nG++a+L ++q
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLLALQ 26 
                 9*********87479******9887 PP

  == domain 2    score: 380.4 bits;  conditional E-value: 4.2e-116
   TIGR02203   3 kRllsyvrpykallvlalvalvlvaatesllaallkplldegfselekeevllavPllvvglvvlrGiasf...vsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltv.GelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekdeGt...ralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk..gRttlviahRLstiekaDrivvlddGkiverGtheeL 555
                 +Rl+    + +  l++ l +++ +   e+++  l+  +l   +s+   e+++      v +l+vl   a f   ++++ ++ +s +  + +R+ +f+ +l    a++d  + g l  +l  d   +++a   +  +       v g+li+ll++sW+++l+++v+ P++a     ++  ++k      +     ++ v+ea++  r v   + q+  +  +  + ++  +  ++ +  +s++s ++++i+    ++++ i  + ++++++t+   +v +++ m a  +  ++  n+  +l   +aaa ++f l+D  p  d+      +++  +G++e+r vtf yp + d++++++ s++ve+G+++alvG sG Gkst+++ll RFy+p++G++llDgvd++dl+++ LR q+ lvsq+ vLF  +i++n+++g+   ++++ev +a++aa+++ +v+  pe  +t+vGe+g +LsGGq+qR+aiaRa++kd  iL+LDeatsaLD+eseR vqaaL++lmk   Rtt+++ahRLst+ +aD i v+ dG+ive+Gth+eL
  MMETSP1174-20130828|8500_1 116 NRLWRLQMSDWPYLLVGLTGAICQGICEPVIGMLFGLMLSGFYSA---EDKIREKSDQVALLFVLLAFAMFfavLAKWPFGAASSSFYKRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNVAGMLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAE--ELEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTtQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAA-RMFRLIDLVPPIDSSSsngLKPPSCKGDLELRGVTFAYPTRpDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKS-GATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 6888888899999999**************999998888877776...44455555555555555555555111567889*********************************************999999998888888889***************************9887777766654433322..22346799*************************************************************9888888776650567888888999888889*********9987665.799****98887765411156778***************97699************************************************************************************99.788889999***************************************************************************733699********************************98 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.36        26     669     692 ..       2      26 ..       1      27 [. 0.88
   2 !  281.1   0.0   5.2e-86   3.8e-84     271     678 ..     251     671 .]     178     671 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.36
   TIGR01846 669 ivesGkheellak.eglyaklyqqq 692
                 ive+G+h+el +  +g++a+l   q
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQIsNGHFANLLALQ 26 
                 9*********99669*****98776 PP

  == domain 2    score: 281.1 bits;  conditional E-value: 5.2e-86
   TIGR01846 271 avmffyspkltlvvlvs....lviylllsvivspilrkrvedk..feksae..aqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqP.vlrlaqlWqdfqqvkialerlGdild..sPteassagkaalpelkGaiefenirfryke.dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvraadrilvlekGkivesGkheel 678
                 ++m   +++l++++ +s    lv+ ++  +i++  l ++   k    ++ae  + s++ e+v++ +t+ a  +++ ++  +   l +  +   + t ++   s   ++i      l++ +Ga l  + +++  q+    ++    ++P + r +    d   +++a  r+  ++d   P ++ss+  +  p+ kG++e++ ++f y      +++++ s+ +++G+++ +vG+sG Gkst+  ll r+y P+ G+vl+dgvd+  ++ +wlr q+g+v qe vlf  si+dni+ +k ++ +++viaaak a ah f++  ++ yet+vge+G +lsGGq+qria+ara++++P il+ldeatsald ese++++  l+++   k rt i++ahrlstv +ad i v+ +G+ive+G+h+el
  MMETSP1174-20130828|8500_1 251 SIMGNVAGMLIILLFFSwrmsLVLLVVCPMIAGTGLLTKAWWKknAGTEAEelEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVC-VFVIMFAAPsIGRQSVNLPDELAAEVAAARMFRLIDlvPPIDSSSSNGLKPPSCKGDLELRGVTFAYPTrPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 55666666666666654111144444444445444444432220022333322579999*************************************9999999999***************************98755.44445555515588888899999******999998743599999999999*****************54134569*********************************************************************************************************************************************************************996226799********************************98 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.1   5.1e-82   3.7e-80     276     687 ..     257     670 ..     231     671 .] 0.94

  Alignments for each domain:
  == domain 1    score: 267.9 bits;  conditional E-value: 5.1e-82
   TIGR03375 276 llfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmkl..pvereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkde 687
                   +l+++ + ++ + lv lv++p++  +gll ++  +k a ++++  +   +l+ e+++   t+ al+ +  +++ + +++++  k  ++   +++  + ++++++ +++ ++  +G+yl +++++t+  +  +v +   a  +++  +  l     a++a  ++ +l++l  p + +++++ l+ +++kG++el+ v+f+Yp + + +  k+ s++++pG  +a++G+ G GKst+  ll ++y+p++G+vlldgvdir ++++ lr+++g+v+q+++Lf++++ dNi  g++ a+d+e+++aa++a ++ fv+  p+ +++q+gerG +LSgGQ+q +a+aRa++kdp il+LDE tsalD++se+ +  +L +l++   +T ++v+Hr s +  +d i v+ +Griv +G+++e
  MMETSP1174-20130828|8500_1 257 AGMLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAE--ELEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLvpPID-SSSSNGLKPPSCKGDLELRGVTFAYPTRpDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQE 670
                 558999*****************************9997766555..56679999***********************************************************************************999999*9999888888899999999999998643556.888999*******************987256788**********************************************************************************************************************************************************************9977889*****************************9876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.49        35     662     685 ..       2      26 ..       1      27 [. 0.89
   2 !  252.4   0.4   2.8e-77     2e-75     257     671 ..     252     671 .]     138     671 .] 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.49
   TIGR03797 662 vveqGsyeeLla.keGlfaelarRQ 685
                 +veqG+++eL + ++G fa+l++ Q
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLLALQ 26 
                 9*********99789*****98766 PP

  == domain 2    score: 252.4 bits;  conditional E-value: 2.8e-77
   TIGR03797 257 llssifallnlvlllvyslklalvavlla.lvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvde...ekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv....tRiviAHRLSTirnadrilvleeGrvveqGsyeeL 671
                 +++ + ++  l++ll +s++++lv ++++ ++a + +l+ + ++ +  +++ ele++l + +v   + ++ l++    +  ++   k+    +k  ++   i+++ + +++v+ +++  ++f + ++l + +++++ +    +  +  +  ++ + +  l + la+  + +r+  +++  p +d+   +  +p + +G++e++ vtF+Y +     +++d s+++epG+ +a+vG+SG GKSt++ lL  F  P++G+vl DG d+++l+v+ +R q+G V Q+  l+++si++ni  g+s  t +e+ +aa+ a     ++  P    T + e g +lSGGQ+QR+ iAra+++ P il++DEATSALD ++ +iV ++l++l      t i++AHRLST++nad i v+ +Gr+veqG+++eL
  MMETSP1174-20130828|8500_1 252 IMGNVAGM--LIILLFFSWRMSLVLLVVCpMIAGTGLLTKAWWKKNAGTEAEELEASLVSEAVSSTRTVTALQMQDFINSLYTDALKK---PEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLVPPIDSsssNGLKPPSCKGDLELRGVTFAYPTRpDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSgATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaktrTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 34444444..56677788888888776662555566788899999999************************9987777776666555...55556777889999999******************999888877776555555555556677777777777777777777777777777766651115678*****************6541568********************************************************************************9988879999***************************************************************************99853232266999****************************98 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.026       1.8     547     575 ..       2      31 ..       1      40 [. 0.86
   2 !  243.3   0.1   1.6e-74   1.1e-72     141     556 ..     255     671 .]     140     671 .] 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.026
   TIGR01192 547 liekgsfdeliq.kdgrfakllrasgllie 575
                 ++e+g+ +el+q ++g+fa+ll    l+ +
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLLALQELTSK 31 
                 89*********9679*******98887765 PP

  == domain 2    score: 243.3 bits;  conditional E-value: 1.6e-74
   TIGR01192 141 fvallllipvalamdlrlslvlvvlgivyvliaklvmsr.tkegqaaveeyyhsvfkhvsdsisnvsvvhsynriea.etkalkkftekllsaqypvldwwalasglnriastislviilvigtvlvkkgelsvgev...iafigfanlligrldqlkafvtqivearakledffdledsvkereep.adarelknvkgavefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvreadlvlfldqgrliekgsfdel 556
                  va +l+i   l + +r+slvl+v++ +    + l  +   k+  +  ee   s+ +    s   v+ ++  + i++  t alkk  + ++   y      +  sg+  + +     +i+ ig++l k  +++  ++   +  i fa   igr       +   + a+     +f l d v   +   ++  + ++ kg++e+r ++f ++   +    +d s ++  g+t+a+vg +g gk+t+i ll+r ydp++g++l+dgvdi  ++ + lr  +  v q+  l+  si +nir g+ +atd+ev++aakaa a+ f+e   ++y+t+vgerg +lsgg++qr+aiara++k+  il+ldeatsald e+e  v++a+d l   k rtt+++ahrlstv +ad +  + +gr++e+g+ +el
  MMETSP1174-20130828|8500_1 255 NVAGMLIIL--LFFSWRMSLVLLVVCPMIAGTGLLTKAWwKKNAGTEAEELEASLVSEAVSSTRTVTALQMQDFINSlYTDALKKPEKDIIRETYIT----SANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMfvcVFVIMFAAPSIGRQS---VNLPDELAAEVAAARMFRLIDLVPPIDSSsSNGLKPPSCKGDLELRGVTFAYPTRPDVpiFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 456666554..44579***999998765544333333321467777789999999999999999999999999998635888888888877766643....44567766666667777999*****99999988875211334678999999843...22334455555566789999999877665145567789**************98765322689******************************************************************************************************************************************************************997225799********************************97 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.07         5     689     709 ..       2      23 ..       1      24 [. 0.92
   2 !  232.3   0.0   2.9e-71   2.1e-69     223     698 ..     197     671 .]     114     671 .] 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.07
   TIGR03796 689 vverGtHeella.kegaYarLi 709
                 +ve+GtH+el + ++g++a+L+
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLL 23 
                 89**********899****998 PP

  == domain 2    score: 232.3 bits;  conditional E-value: 2.9e-71
   TIGR03796 223 iklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvf.yalvmllydlvlaliaiala.ainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiG.mlvafqsllasflepveklvglvselqe..leadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeel 698
                   +  ++ + f++ +l   + f++    g ++  ++ + ++ + + ++ + t ++++  v   ++++l +++ ++l+ +++  +i  + l +++  +++a ++ ++ ++ l + a+++ +++ +l+     + +++       k +  e  +  a    s + +++t +   li  +g+++  + ++t   m+v    ++ +  +  ++ v+l  el     +a + rl D++  p+d + ++        ++    +G +elr+vtf+y ++ + p+ +d+s++++pG+ +AlvG sG Gkst+  l+  +y+p +G++l+Dg++ ++++ + l+  + lv+q+ vlf++++ dn+    +  ++++++ Aak A  h  +   p++ye+++ e g  lsGGq+qR+ iARa++k+P+iL+lDEatsaLD+e E++++++l    + +  t+i+vaHRLst+ ++d i v+  G++ve+GtH+el
  MMETSP1174-20130828|8500_1 197 SSFYKRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNVAgMLIILLFFSWRMSLVLLVVCpMIAGTGLLTKAWWKKNAGTEAEELEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSA---NSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTqMFVCVFVIMFAAPSIGRQSVNLPDELAAevAAARMFRLIDLVP-PIDSSSSN------GLKP-PSCKGDLELRGVTFAYpTRPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALdnlmKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 44445566678888899999999999999999999999888888888888888888876652566778889999988766541566666777777777888888888888888888777777777666555555555555555555554444444...4567889999*************99999987526666666766666666788999988864225678999999764.56655555......3444.6899************446799****************************************************************************************************************************************************************997553222377999*********************************98 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2       0.5        36     135     158 ..     259     282 ..     136     323 .. 0.77
   2 !  221.2   0.0     9e-68   6.4e-66     286     528 ..     408     656 ..     400     657 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.5
   TIGR02857 135 ilaavltadwisalillltlPlip 158
                 +l+++l+ +w   l+ll++ P+i 
  MMETSP1174-20130828|8500_1 259 MLIILLFFSWRMSLVLLVVCPMIA 282
                 67888999**************97 PP

  == domain 2    score: 221.2 bits;  conditional E-value: 9e-68
   TIGR02857 286 akaegvaaaealvevldaeeqpeaekapltaaass..slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528
                 ++ +++ aa+ +++++d  + + +++++  + +s    lel++v++ay+ r   p+ k+ s++vepg+++alvG+SG GKst+++ll +f +p+ G++l++g+++++l+ + +r+q++ v+Q+P+lf++++++nir+++++a+++ev +a+++a+++ +v+  p+ +et++Gerg +LSgGq+qR+a+Ara ++d  +l+lDE t++LD+e+e  v++al++l+  ++rt+++vaHrl+++ +ad i v
  MMETSP1174-20130828|8500_1 408 DELAAEVAAARMFRLIDLVPPIDSSSSNGLKPPSCkgDLELRGVTFAYPTRPdvPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAV 656
                 677899***********444444444444444433799**********99987999***********************************************************************************************************************************************************************9777899***************9976 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0   0.1   3.1e-67   2.2e-65     132     539 ..     259     670 ..     170     671 .] 0.81

  Alignments for each domain:
  == domain 1    score: 219.0 bits;  conditional E-value: 3.1e-67
   TIGR01842 132 yllvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilvgraLaPidqaievWkqfsaarkaykrlkelleelp....areealklPepegelevenvslvppee.kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkitvvvithrpsllelvdkilvlkdGalkafGeree 539
                  l+++  +   + l+ lv + ++ +++ll++a  kk++++  e+     +l+++a   +  + al m + +++ +++  +k  +     ++ ++a s++s v+ +    l+ ++Gayl  ++++t+ ++ +   ++  a   i +   +  +  aa+ a +r+ +l++ +p    ++++ lk P+ +g le+  v+++ p+    +++k+ s+++++G++la++G sg Gks++  ll   + p++G+v lDg+d++  + + l  ++G + q+  Lf+ ++ +ni   +  a++++vi+aak+a++h ++  +p+ Y+t++ge+G +LsgGq+qRia+aRa+  dP++++LDe  + LD+e e  + +al +l ka+ +t+++++hr s +  +d i+v+ dG++ + G+++e
  MMETSP1174-20130828|8500_1 259 MLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAEELE--ASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLVPpidsSSSNGLKPPSCKGDLELRGVTFAYPTRpDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQE 670
                 444444455558899999999********99988877654444333..345555666666788888888888888877777777777777788888888889999999******************9999888777777777877777777778899999999999998872221344559***************9988651669*********************************************************************************************************************************************************************986488899*****************************99886 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.4   1.7e+02     686     706 ..       2      23 ..       1      24 [. 0.85
   2 !  202.9   0.0   2.8e-62     2e-60     233     695 ..     205     671 .]     170     671 .] 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.4
   TIGR01193 686 iieqGshkellk.enGfyasli 706
                 i+eqG+h+el + +nG++a+l+
  MMETSP1174-20130828|8500_1   2 IVEQGTHQELSQiSNGHFANLL 23 
                 9*********874799999986 PP

  == domain 2    score: 202.9 bits;  conditional E-value: 2.8e-62
   TIGR01193 233 lsyikhlfelPmsffstrrvGeivsrft.daskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPl.eniinlqpklqaarvannrlne.vylvdsefkekkkltelenlngdievndvsysyGygs..evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkel 695
                 + + k ++   ++f  t   G + ++++ d s i  a   ++ + f  +  +  + ++l++   ++ l+ lv+ P+ a   +l  k++ k n    ea+ + +s + e ++   t+ +l+ +++  +  ++ +++  +  ++ +      +    v+ +    +i+ +Ga+l   +++t  q+     ++ +    + +  +nl   l aa+va  r+   + lv+   +++ +  +  + +gd+e+  v++ y      ++++d s++++  ++++lvG sG Gkst++ ll +f++++ G++ll+g++++d++ + lr  +  + qeP++f+ si++n+    k +++++e+++a + a+ +  +e +p  y+t++ e + ++sgGqkqr+a+ara++ d  +l+lde+ts ld   e+ +   ++nl+k k +t i+vahrls   ++d i v+ +G+i+eqG+h+el
  MMETSP1174-20130828|8500_1 205 MMFFKSMLCQDIAFHDTVPPGVLSAQLShDLSLIARAHDHATCTKFSIMGNVAGMLIILLFFSWRMSLVLLVVCPMIAGTGLLT-KAWWKKNA-GTEAEELEASLVSEAVSSTRTVTALQMQDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMFVCVFVIMFAAPSIgRQSVNLPDEL-AAEVAAARMFRlIDLVPPIDSSSSNGLKPPSCKGDLELRGVTFAYPTRPdvPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRH-GKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVqaaLDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 5566666666677777777777777765477888888888888888888888889999999999***********988876655.55555554.4578888899999************9998865555555555555555555555666667777888888899******************9987777766666645789*98888.68888888765267999888888888889999*************987512689*****************************************************************************865.588999999****************************************************************99975433489****************************************997 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0   4.3e-57   3.1e-55     141     530 .]     256     645 ..     198     645 .. 0.83

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 4.3e-57
   TIGR02868 141 alaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavl.aqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvthrl 530
                 ++ +  ++ ++s+ + lvl+++  +++    l +++ +++a+ ++++l ++l +++++  + +  l+++   +    +++++ e++++r    ++a +++++ +t++  Gl     + +      d++++ + + v v++ + a   +   +  +    +++ aa+R+  ++d  ++ + +s++  ++ +  k +lelr+++++yp+ +   ++k+ s+ +epG+ +a+vG sG GKst+++ll ++ dp++G+v+ldgv++ +l+ + +r  + ++ q++ lF++++ +N+r ++  atd+e+ aa +++  +  ++ +p+ ++t++ge+g +lSGG++qR+a+ARa+++d  +l+LDE t  LD e e+ + ++L + ++ +t  +++v+hrl
  MMETSP1174-20130828|8500_1 256 VAGMLIILLFFSWRMSLVLLVVCPMIAGTGLLTKAWWKKNAGTEAEELEASLVSEAVSSTRTVTALQMQDFINSLYtDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKK----DDHVTTTQMFVCVFVIMFAAPSIGRQSVNLPDELAAEVAAARMFRLIDLVPPIDSSSSNGLKPPSC-KGDLELRGVTFAYPTRPDvpIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTrtTIMVAHRL 645
                 44445566789999999999888888888889999**********************************9998865156678899999999999*************99997766555554....66666666666666666666666666666777777889999******9998888777777766665.99*************998778***********************************************************************************************************************************************************99877777764444433339*****86 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   5.3e-41   3.8e-39      17     229 ..     464     670 ..     447     671 .] 0.92

  Alignments for each domain:
  == domain 1    score: 132.3 bits;  conditional E-value: 5.3e-41
   TIGR00972  17 lkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteq 229
                  kd ++ ++  k  al+G sG Gkst++  l r+ d       +G+vll+g di d   +v+ lr ++G+v q+p  f+ si+dn+ +g      ++  +  +++++ +   ++ ++ ++++ + +++LsGGq+qr++iara+  +P +l+lDe tsaLD+++ + +++ +++L k    t ++v h ++  +  +d +a++++G++ve+g+ ++
  MMETSP1174-20130828|8500_1 464 FKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQ-----AGHVLLDGVDIRDL--NVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAktRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 6888999999**************************98.....9**********986..8999**************************9887777777788899999999**************************************************************976534789*******97765.8***************9876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.5      0.63        46    1038    1105 ..     201     268 ..     165     283 .. 0.71
   2 !  125.9   0.0   3.2e-39   2.3e-37    1281    1505 ..     442     670 ..     429     671 .] 0.91

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.63
   TIGR00957 1038 rvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatp 1105
                  +++ + +++++l    +f ++ p g l  ++s++l  +     +     ++ + nv g +i++l  + 
  MMETSP1174-20130828|8500_1  201 KRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNVAGMLIILLFFSW 268 
                  4556667788999999*******************999988888887777777788888877775443 PP

  == domain 2    score: 125.9 bits;  conditional E-value: 3.2e-39
   TIGR00957 1281 ksgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldp.fsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edctvltiahrlntimdytrvlvldkgevaefdapse 1505
                   +g++e+r  ++ y    d+ +++d +v++e g+ + +vg +g gks++   l r  +   g + +dg++i ++ ++ lr ++ ++ q+pvlf+ s+  n+    s  +d+ev  a + a  + fv   p+k + +  e g +ls gq+q + +ara+++   il+ldeat+a+d e++ ++q+++   +  ++ t + +ahrl t+m+   + v+  g + e ++  e
  MMETSP1174-20130828|8500_1  442 CKGDLELRGVTFAYPTRPDVpIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHgKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkaKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQE 670 
                  37999***999999777776478*****************************************************************************975167789****************************************************************************997661156677888*********************99998766 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.2   4.4e-36   3.2e-34      10     216 ..     465     670 ..     462     671 .] 0.92

  Alignments for each domain:
  == domain 1    score: 116.5 bits;  conditional E-value: 4.4e-36
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl..eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPde 216
                 +d ++ +e G  + ++G sG Gkst++ ll+r+ +P aG++l+dG+di +++ + l    r ++++v q+  lf   +i+dni +g   +  +e     ka +a   v+   e+ye +  +   +lsGG++qr+ +ara+  +P +l++dea sald      +q  l +l k   +t ++++h l   +  +d i+++ +G iv  Gt +e
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWL----RDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGfpEKYETQVGErgiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 678999**********************************************9999....99*********9997.689*******998888888888999999888864478898887664458*************************************************************99886.9****************887 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0     5e-34   3.6e-32       6     232 ..     450     670 ..     446     671 .] 0.85

  Alignments for each domain:
  == domain 1    score: 109.5 bits;  conditional E-value: 5e-34
   TIGR02315   6 nlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                  ++  yp+  +  ++k+ ++ +++G+ +a++G+sG Gkst++  ++r+ +++ g++ll+g ++++l+   ++ lr ++g+++qe  l    ++++n+ +g+ ga++  ++++   + ++ +  +e   +   + +  +r  qLsGGq+qR+aiaRa++++p++++ DE +++LD +s ++v  +l ++ k k  t+i+  H+++ +++ ad i  + +g+iv +g+ +e
  MMETSP1174-20130828|8500_1 450 GVTFAYPTrpDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLN---VKWLRDQMGLVSQEPVLF-AASIMDNIRHGKSGATD--QEVIAAAKAANAHMFVEGFPE-KYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 556666652245679************************************************9776...667789********8776.578********999876..445555555555555554433.456778899*****************************************************************9986.9999999*****99988776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1   5.8e-34   4.2e-32       2     219 ..     446     671 .]     445     671 .] 0.84

  Alignments for each domain:
  == domain 1    score: 109.3 bits;  conditional E-value: 5.8e-34
   TIGR03864   2 leveglsfaygkrr...alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsrae...aeerieealarlglaeraeekvr....eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaael 219
                 le++g++fay +r    +++d s++v++g+  aL+G  G Gkst++sll r y+ ++g++ + G+d+r+ +++ l+ ++G+v q++ l    s++ n+r+  +  G + +e   a++  ++++   g+ e+ e++v     +L+GG+++r+ iara++ +P++L+lDeat  LD es + +++++ +l++++  + +   h +  v ++d++ v+  G+++ qG+ +el
  MMETSP1174-20130828|8500_1 446 LELRGVTFAYPTRPdvpIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRdQMGLVSQEPVLF-AASIMDNIRHGKS--GATDQEviaAAKAANAHMFVEGFPEKYETQVGergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 6778888999877522267999***************************************************99758********995.689*****97544..3333331113333334444556777777776422337***********************************************************************************9886 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.1   4.2e-32     3e-30      19     222 ..     463     671 .]     457     671 .] 0.86

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 4.2e-32
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.krd.yGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPg.......qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 ++kd s+ v+ g  ++l+G sG Gk+t++ ++  + +++aG++ll+g di +l ++  rd  G+v q  +Lf    + +ni +G ++   ++  +a++ +++   v  +g  eky +       qlsGGq+qr+a+ara++  P +L+LDe  saLD+     ++  l +l +    ttimv+h     +  aD i+v+ +g+i   gt +e+
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKwLRDqMGLVSQEPVLFAA-SIMDNIRHGKSGATDQEVIAAAKAANAHMFV--EGFPEKYETqvgergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQEL 671
                 57899***********************************************9987445538**********75.89*******9988866655566655554444..444444443111333489**********************************************************988766.59****************9985 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.5   5.1e-32   3.7e-30       1     187 [.     479     670 ..     479     671 .] 0.85

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 5.1e-32
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte..vpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaei.kervkeaLelv.....qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187
                 l+G sG Gk+t++ ll  + ++++G++lldg+d+ +  v   + ++++v q+  Lf   ++++n+ +g     ++++ i +++  +a   v     + e+    + +qlsGGq+qr+a+arav+k P iL+lDe+ saLD +    +q  l +l +    t+++v+h  +  +  +d iav+ +G+i+  g+ +e
  MMETSP1174-20130828|8500_1 479 LVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDlnVKWLRDQMGLVSQEPVLFA-ASIMDNIRHGK-SGATDQEVIaAAKAANAHMFVegfpeKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGTHQE 670
                 68********************************86115556789***********7.69*******95.4555555551456666666663223235555667789************************************************************988776.59************9999887 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   4.5e-31   3.3e-29      12     203 ..     462     654 ..     450     657 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 4.5e-31
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv.glekklkkki....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtHdpevaekadrv 203
                  i+k+ s+++e G+++a+vGesG GKst++ +l ++ +++ g+v+l+g +     +  + k lr+++g + q+  L    ++ +n++ +      ++     k  ++   v g+ +k ++++     +lsgG+kqR+a+ar+++k++++++ DE t++LD++++ +v + l++l + + +t i+v H  +   +ad +
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDI----RDLNVKWLRDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVIAAAKAANAHMFVeGFPEKYETQVgergIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLSTVMNADSI 654
                 69************************************************3....45678899**********99885.6899****99888777666544444444444424555555544222278*******************************************997552789*******99988888876 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.2   1.5e-30   1.1e-28      15     217 ..     463     670 ..     458     671 .] 0.88

  Alignments for each domain:
  == domain 1    score: 98.2 bits;  conditional E-value: 1.5e-30
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdryps.......qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaee 217
                 +++d ++ v+ G+  al+G sG Gkst++ ++  + +p++G++ll+G d+  ++v+  + ++G+v q+  lf   +++dni  G      ++    ak  +      +e++ ++y +       qlsGGq+qr+a+ara+  +p +l+lde  +ald++  + ++a l +l +    tt++v+h  +  ++ ad i+v+ +G+i + g+ +e
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKwlRDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVIAAAKAANAHM--FVEGFPEKYETqvgergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 5788999*******************************************98887644789***********8.589*******99887777777777776554..45677777765222233379************************************************************99997.9***********99999887 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.1   1.7e-30   1.3e-28      23     227 ..     463     671 .]     441     671 .] 0.86

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 1.7e-30
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvq.l.sdaaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 +++d s+ +e+G+ lal+G+sG Gk+t++ ++  f  ++ G++l+ + d+  l     + +++l+ q+  lf    +++n+  G       +   a + a+a   v+ +   + +++     qlsGGq+qr+a+ara++ +p +l+lde  sald++    v+  l +l +     t+ +v+h r  +++ ad i ++ +G+++++G+ ++l
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVkwLRDQMGLVSQEPVLFAA-SIMDNIRHGKSGATDQEVIAAAKAANAHMFVEgFpEKYETQVgerGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTI-MVAH-RLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 789***********************************************988642146789**********85.899*******9999999999999999999986332234443311167***********************************************998877665.6888.5677889*****************9976 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0     4e-30   2.9e-28      20     219 ..     463     662 ..     447     663 .. 0.88

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 4e-30
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 +++d ++++epg  + l G+sG Gk t+++l+  +   q G++ + g ++++++   ++ +r ++G++ q+  l+ +   ++n+r +   +++ +  +a++ a++ +   g+ e    ++  +  +lsgGqkqr+aiara+++ P +++ de t+ald++s r v   l +l + ++ t ++v+h    +  ad i  + dG++
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLN---VKWLRDQMGLVSQEPVLFAA-SIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEkyetQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRI 662
                 77899**************************************99999988775...6679**********999976.7899****9988777666666666666666666666333366777889***********************************************************9988888999999999987 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.1e-30   3.6e-28       3     202 ..     447     650 ..     446     659 .. 0.82

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 5.1e-30
   TIGR02673   3 elekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelv.gledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelver 202
                 el+ v+++y+   +v + kd s+++e+g+ l l+G+sG Gk+t++ ll     p++G+v ++g d+++l+   +  lR ++g+v q+   l + ++++n+    + + ++e     +  ++   v g+ +k ++       +lsgG +qR+aiaRa++++P++l+ De t  lD+e ++ + + l +l k+   t i+++h  + v +
  MMETSP1174-20130828|8500_1 447 ELRGVTFAYPtrPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLN---VKWLRDQMGLVSQEPV-LFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVeGFPEKYETQvgerGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAHRLSTVMN 650
                 68889999*94446889***********************************************998875...7799*********975.56789*****988776666665555555554444438888887652222679**********************************99999999998876515577788887766554 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   5.9e-30   4.3e-28      16     210 ..     466     665 ..     446     668 .. 0.82

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 5.9e-30
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrs..apyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqv.Giad.ylerlpe...elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  +++ ve G+ +a++GesG Gkst+++l+  f  p  G++ ++++d   +     +  + ++ qe  lfa  ++ +ni  G   +   + +   k  ++   v G  + y  ++ e   +lsGGq+qr+a+ar ++++  il+lde  sald    + + a + +l + k +t ++v+h+ls ++  a+ ++vv dG+i  +
  MMETSP1174-20130828|8500_1 466 DYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLnvKWLRDQMGLVSQEPVLFAA-SIMDNIRHGKSGATDQEVIAAAKAANAHMFVeGFPEkYETQVGErgiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQ 665
                 58899**************************************999765511567889999********96.7899***99777766666666665555544435433143444434448*************************************************************9876.5899********9876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.1   4.8e-29   3.5e-27       3     202 ..     447     650 ..     446     661 .. 0.78

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 4.8e-29
   TIGR00960   3 kfeqvskaykgaae.laldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkg.reieervsaalekvGlkdkak....alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt.tvlvathd.enlve 202
                 +++ v+ ay++  + + +++ +v++e G+   lvG+sG Gkst++ l+     p+aG++++ g d+    d +v  lr q+G+v q+  +l   +++dn+      +  +   ++ + ++a +   G+ +k +    +  +qlsgG++qr+aiarav+++P++l+ de t+ ld+e  r +   l+++ +a t t ++ +h   ++++
  MMETSP1174-20130828|8500_1 447 ELRGVTFAYPTRPDvPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIR---DLNVKWLRDQMGLVSQEP-VLFAASIMDNIRHGKSGATDQEvIAAAKAANAHMFVEGFPEKYEtqvgERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTrTTIMVAHRlSTVMN 650
                 577899999886542789**********************************************986...55799***********86.667789****998765443333033444445555556887776511114579***********************************99999999999876543255666665044444 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   7.1e-29   5.1e-27      20     227 ..     463     670 ..     451     671 .] 0.85

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 7.1e-29
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekik.rk.vtellalvglsdkkdsyps....nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvse 227
                  +++ s+ v  g+ + ++g sg gkst+i  ++ +  p  g+v++dg+d+  l+       r q+g++ q   l++  ++++n+       +t +e i   k  +  + + g+ +k ++       +lsggqkqr+aiara+  +p +l+ deatsald  + + +   l ++ +  + t ++++h +  v +  d++av+ +g+++e+gt  e
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVK---WLRDQMGLVSQEPVLFA-ASIMDNIRHGKSG-ATDQEVIAaAKaANAHMFVEGFPEKYETQVGergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 57899999*****************************************9988654...5599*******977665.6899***987654.45555553244155566677*****99875422227**************************************************************9986.79**************9766 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.2   1.4e-28     1e-26      10     211 ..     465     671 .]     459     671 .] 0.85

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 1.4e-28
   TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenl...ellgelyglpkkeaeeraeellelvelkeaad..kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeL 211
                 ++ +++ve g+ ++l+G  G GK+t+i++L     P++G++ + G D+   + + +R ++g+v q+  +  + + ++n+   +  +  +++  +++ + a+  +e +  k+ ++  ++  ++sgG+++r+ +a+++i++P +l LDE t+ LD+++ r++   +++l k+   t+++ +h l  + + ad +a++  G+i+ ++t +eL
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDlNVKWLRDQMGLVSQEPVLFAA-SIMDNIrhgKSGATDQEVIAAAKAANAHMFVEGFPEKYETQvgERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAHRLSTV-MNADSIAVVYDGRIVEQGTHQEL 671
                 677899*****************************************98646779***********988754.4555551115556667777777777788888888666554422445589********************************************98886889********998.669******************98 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.1   2.2e-28   1.6e-26      14     218 ..     462     670 ..     446     671 .] 0.87

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.2e-28
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipee.iyelFPvlkeml.kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                  +++d s++ve g+++a++G  g Gk+t++  l   ++ ++G++ l+g di++l+ +   +  ++ v+q   +f++ ++++n++ g + ++++     +k+ +++   e FP   e +   rg +LsGGq+q +aiaRa++++P +l+LDe t  +     + +++++++l k k  + ++v + l+ +++ ad+++v+  G++v++g+++e
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVK-WLRDQMGLVSQEPVLFAA-SIMDNIRHGKSGATDQeviaaAKAANAHmFVEGFPEKYETQvGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 58999***********************************************99865.578889*****9888875.9*******9988777656665444454415689**876655278899***********************************9999************************9999.9***************9876 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0     3e-28   2.2e-26      17     220 ..     460     663 ..     447     664 .. 0.84

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 3e-28
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll.iskkskkeakerake.l.lekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                 ++ ++k+ s+++e g+++a+vG+sG Gkst++ ll  + +p +G+vll+G +++ l+ +    lr+ ++G++ q   l    ++++n+       +++++  a+++a++ + +e +  + e ++ ++  +lsGG++qr+aiara++++P++++ de t+ ld+++ +++   l +l k+k  + ++v+h l+ + ++d    ++dg+++
  MMETSP1174-20130828|8500_1 460 DVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVK---WLRD-QMGLVSQEPVL-FAASIMDNIRHGKSgATDQEVIAAAKAANAhMfVEGFpeKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIV 663
                 67899*************************************************99754...5775.79*****7655.5679*****987651445555555554443130343332456677778888*********************************************************************9999999986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.4   6.7e-28   4.8e-26      25     234 ..     462     667 ..     451     671 .] 0.84

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 6.7e-28
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlts..ldeserkariaellelv.elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeik 234
                 +++++ s+ +e G+t+al+G+sG Gkst+  ll  +  P+ G+v   G+d+  l+    k +r ++ lv q+ +       s+   i+      t+  + ++++ a ++ ++e   e  + ++  +  qlsGGq qri+iara+  +P +++ldea s ld      + + l +l ++   + ++++h l+ v + a+ ++v+ +G+ive+ +
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNV---KWLRDQMGLVSQEPV---LFAASIMDNIRHGKSGATDqeVIAAAKAANAHMFVEGFpEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGT 667
                 688999**********************************************9985...678999****99864...344566666666655555411445566666666666552444557788999****************************************************************986.899***********965 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.8      0.11       7.6      80     333 ..     126     375 ..     110     402 .. 0.69
   2 !   83.5   0.0     2e-26   1.5e-24    1214    1429 ..     442     662 ..     403     671 .] 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.11
   TIGR01271  80 wrflfygillylg.evtkavqplllgriiasydaknaeereiayylalglsll.fivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserl..aitseiieniqsvkaycweeamekiienirqvelkltrk.vayvryfsssafffsgllvvvlsvvpyalikgii 333
                 w++l+ g+   +   ++  v  +l+g +++ + + + + re++  +al + ll f + + +l    fg     +  r+ +  + +k +l       d +  g l + ls +l  +  +   a     + +  v   g++  ll  s   +l +l++  +  a+ g     + +k ag  +e l  ++ se +   ++v a   ++ ++ +      + lk   k +    y++s+   fs ++ ++   + +++   ++
  MMETSP1174-20130828|8500_1 126 WPYLLVGLTGAICqGICEPVIGMLFGLMLSGFYSAEDKIREKSDQVALLFVLLaFAMFFAVLAKWPFGAASSSFYKRVRM--MFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHDHATCTKFSIMGNV--AGMLIILLFFSWRMSLVLLVVCPM-IAGTGLLTKAWWKKNAGTEAEELeaSLVSEAVSSTRTVTALQMQDFINSL----YTDALKKPEKdIIRETYITSANSGFSNVITMFCYGLIFSIGAYLK 375
                 7888888776554147788999999*99*9999999999999999999888873556667889999**999999999988..47899999999999******9999999999876655444433333322222..233333333344445555555544.47778888899999***999988445889999999999988766655555....555554433314555799999999999988887665555544444 PP

  == domain 2    score: 83.5 bits;  conditional E-value: 2e-26
   TIGR01271 1214 sggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldp.yeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafs..nctvilsehrveallecqqflviegssv 1429
                   +g+++++++t  y t     +++d s  ve+g+++ l+g +g gkst++s l r+ +   g + +dgv    + ++  r  +g++ q   +++ ++  n+       +d+e+   a+    +  +e fp+k + ++ + g+ ls g kq + +ar+++    il+lde ++ ld  + +i++ +l + +     t i+  hr+ ++++ +++ v+ + ++
  MMETSP1174-20130828|8500_1  442 CKGDLELRGVTFAYpTRPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDpQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHgKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKakTRTTIMVAHRLSTVMNADSIAVVYDGRI 662 
                  479999999999995666788**********************************9982569***************99*********************975156789****************************************************************************9987651146799************99988866555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.2   1.2e-27   8.4e-26       3     212 ..     465     670 ..     463     671 .] 0.83

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1.2e-27
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPll.tikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvke 212
                 +d ++ +  gk lalvGesG Gks++ + +  + d      +G++lldg ++ +l  +    +++l+ q+P+     ++ +i++    +  +     + ak+  ++++ +   e+ e+ + +   +lsGG  qR+ ia a++ ++++l+ De t++lD  ++  v   l++l++ +  + ++++h l+ v + ad +av+ +G+ive+gt +e
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYD----PQAGHVLLDGVDIRDLnvKWLRDQMGLVSQEPVLFAASIMdNIRHGKSGATDQEVI--AAAKAANAHMFVEGFPEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 567889999***************87766666666....568**********99944556789********976665551455444444433333..3444446777877777888999999******************************************************************9976.9**************99876 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.1   2.4e-27   1.7e-25       6     186 ..     462     644 ..     455     648 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.4 bits;  conditional E-value: 2.4e-27
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpth.......llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.eeGktvvisthd 186
                  ++k+ +++ve g++lal+G+ G Gkst+++ l+    P++G+vlldG ++     ++  lr +++lv q+p   lfaa++++++  g    G +++ev +  + a a + ++g+ e+          +lsgG+k+r+aia av+  p +l+lde t+ ld++ ++ + ++l++l  ++ +t ++ +h 
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIR--DLNVKWLRDQMGLVSQEP--VLFAASIMDNIRHGKS--GATDQEVIAAAKAANAHMFVEGFPEKYETqvgergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHR 644
                 4689999*****************************************7764..556777899*******99..6************986..89999999999999888888888766533122233379********************************************861567788998885 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.6   1.1e-26   7.7e-25      15     233 ..     463     670 ..     458     671 .] 0.88

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 1.1e-26
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadal....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpde 233
                 ++++ ++ v++G+ +al+G sG Gkst++ +l  +   + G++ ++g  +  ++             ++ +r+++G+v q+  lf   +++dn+      +   +  +a k a   + + G+ +k ++       qlsGGqkqr+aiara+   p +l++de+tsald e    v + l +l + +  t ++v+h++    + ad +   + G+ive+G  +e
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLN-------------VKWLRDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQvgerGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 56778999*************************************886655554.............7889**************7.689****99988887777777777777777788999998764222268************************************999***********************98876.9***************9877 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.3   4.6e-27   3.3e-25      13     223 ..     460     670 ..     445     671 .] 0.87

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 4.6e-27
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPh..rslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                  ++i +d  v + +G+  +l+G  G Gkst+++ll     p+aG+v l+g+d++ l+ +    ++ lv q+       s+ d +  G+     + ++aa  +++a++  + + +   +++ +r ++ lsGG++qr+ +ara+ ++P++l+lde t  ld ++   + a++ +l+ a+  t+++  h l+   + +d + v+  Gr+v  G+ +e
  MMETSP1174-20130828|8500_1 460 DVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPV-LFAASIMDNIRHGKSGAtdQEVIAAAKAANAHMFVEGFPEKYETQVGERGIQ-LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHRLSTV-MNADSIAVVYDGRIVEQGTHQE 670
                 467999999*************************************************************865.567799999999986541156677777788888888888999999****986.9**********************************99999999999844455777778***975.578*************999765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.1     9e-27   6.5e-25      19     219 ..     470     671 .]     464     671 .] 0.84

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 9e-27
   TIGR02142  19 elpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielL.......giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleev 219
                 +++     al G+sG Gk+++i l+     p++g++ ldg  + d      +   + ++g v qe  LF+  s+ +n+r+G + a+ +e  +  ++  + +         e  +  +  +LsGG kqR+ai+RA++ +P +L++De  +aLD+++ + +   L++l +  +   ++v+H l+ v   ad + v+ dGr+  +g+ +e+
  MMETSP1174-20130828|8500_1 470 RVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDL----NVKWLRDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVIAAAKAANAHMfvegfpeKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQEL 671
                 55555788********************************988775....55778999***********8.699********99988875333333333330111111234556666679************************************************99999**********987.9***************99885 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.1   5.1e+02     370     408 ..     145     186 ..     117     192 .. 0.68
   2 ?   -3.3   0.0       7.2   5.2e+02     570     607 ..     336     374 ..     322     377 .. 0.77
   3 !   73.0   0.0   5.9e-23   4.2e-21      35     253 ..     458     670 ..     447     671 .] 0.82

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 7.1
   TIGR00955 370 vvavligliylgqeltqkgvqnin...galFllltemtFqtv 408
                 v+++l gl+ +g    ++++++ +   + lF+ll+  +F +v
  MMETSP1174-20130828|8500_1 145 VIGMLFGLMLSGFYSAEDKIREKSdqvALLFVLLAFAMFFAV 186
                 566677777776666666666554111445555555555444 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7.2
   TIGR00955 570 pssgeeiLeelsfeaadl.aldllilvvlilvfrllayl 607
                 ++ +++i++e+ +  a+    +++++++  l+f + ayl
  MMETSP1174-20130828|8500_1 336 KKPEKDIIRETYITSANSgFSNVITMFCYGLIFSIGAYL 374
                 455567777777777777688999999999***999997 PP

  == domain 3    score: 73.0 bits;  conditional E-value: 5.9e-23
   TIGR00955  35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspee 253
                 +p   + k+ s  +++G+ lA++G SG GK+T ++ l      +    g+vll+G  +   + k +r   + v q+ +++   ++ +++        ++++ +  k +  +  +e  g  +  +t +g  g    lSgG+++R+a+a  +++dP++L++DE Ts LDs s   v  +L +l + k +t i++ H  s  ++ + d i ++ +Gr+v +G+ +e
  MMETSP1174-20130828|8500_1 458 RPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQA---GHVLLDGVDIrdlNVKWLRDQMGLVSQEPVLFAA-SIMDNIRHGKSGATDQEVIAAAKAANAHMFVE--GFPEKYETQVGERG--IQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLST-VM-NADSIAVVYDGRIVEQGTHQE 670
                 5667789999*************************9987766554...459****876222667889999999999888765.66677777666667777777777777776666..66788899999666..58***********************************999999***997537899******9775.44.56***************9876 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   3.2e-23   2.3e-21       2     191 ..     465     660 ..     464     670 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 3.2e-23
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad....krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltng 191
                 kd +++++ g+ ++l+g sg gkst++ l+  +  p +g v l+g +i +       d+m +  +  +l   ++ +ni      ++  ++     +  + h+ + g+ e  +     r  qlsgg kqr+aiara+   p +l+lde   ald+ +   +q  l ++++ ++ t++mv+h +  +++ +d + ++ +g
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNvkwlRDQMGLVSQEPVLFAASIMDNIRHGKSGATD-QEVIAAAKAANAHMFVEGFPEKYEtqvgERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLS-TVMNADSIAVVYDG 660
                 6778999***************************************998765222269998888888888899*****986554443.344444555666776666655554111145679***********************************************************996.57788888877776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.7e-05    0.0019      12      60 ..     460     506 ..     451     516 .. 0.89
   2 !   65.7   0.7   8.8e-21   6.3e-19     307     514 ..     471     670 ..     468     671 .] 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.7e-05
   TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                 ++ ++k+ s+++e G+ l ++G+sG Gks ++ ll     y+p+ G+++
  MMETSP1174-20130828|8500_1 460 DVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERF--YDPQAGHVL 506
                 567899*****************************865..679999887 PP

  == domain 2    score: 65.7 bits;  conditional E-value: 8.8e-21
   TIGR03269 307 vkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel.akrkavi.vlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpee 514
                 v+ ++   lvG sG Gk+t+  +l    +p +G+v +    + vd+ + +v+     +  +Gl+ qe  l++  ++++n+ +  +    +e+ a  ka    + + Gf e++ +++ ++   +ls G++ r+a+a+ +ik+p i++lde t ++d  +++ v+ ++ +  +   +t ++v+h +  v++  d +a++ dG+iv+ G  +e
  MMETSP1174-20130828|8500_1 471 VEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLL----DGVDIRDLNVK---WLRDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEViAAAKAANaHMFVEGFPEKYETQVGER-GIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 55667789*************************9976....66888777643...46788***********8.57******9998888887436777765156778*******999988.568******************************************99999999*************988.7**************98876 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   1.8e-22   1.3e-20      12     229 ..     460     668 ..     457     671 .] 0.81

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.8e-22
   TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdv 229
                 d +i k+ ++ v++G++ a++G  G Gkst+ + l   + y  ++G++ l+g d+ +l+v+   r  + l  q p+  +  s+ + +r+    ++   ++e     + +k  ++++ +  ++e++ +     G   sGG k+r  i +  + +P++ +LDe+ s lD ++ +iv + +++l +  ++++++++h  rl   ++ d + v++dGriv++G  
  MMETSP1174-20130828|8500_1 460 DVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLE--RFYDPQAGHVLLDGVDIRDLNVKW-LRDQMGLVSQEPVLFAA-SIMDNIRHGKSGAT---DQEV---IAAAKAANAHMFVEGFPEKYETQVGERGiqLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAkTRTTIMVAH--RLSTVMNADSIAVVYDGRIVEQGTH 668
                 67899***************************9996..5677889***************85.355555789**997765.44445666655555...3443...3344555666666666666666655555336******************************************9987764788899998..89999*****************975 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   2.7e-21     2e-19      53     550 ..     170     665 ..     115     668 .. 0.72

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 2.7e-21
   TIGR01194  53 qvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtl..lilttllvelavtlfglaylaylsvvvfl..ltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllvGllltlaayfavidakaisas...vlvllyikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleled.kvkved..lnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                 qv l fv l+  a+ + + a+     +s     r+r+ + + +l   +   +      l + l++d+  ++      + t + +   v  + l  l ++s+ + l  l v  ++ G+ +   a  +   +t  + ++e  l     + +  +  l++     + f +s   ++  +  +  i e  i  +   + +++ +   Gl++ + ay    d  + + +   v+v+++    + +    lp    a+va  r+    +r+ +  p +  s ++    l++  + + lel+ v ++y+       f+     +r++ G+ + +vGe G Gkst+i ll  +y pq G++lldG  + d      rd +  v  +  lf   +  + ++  s    ++ +   + ++  + ve+   +y t       +ls Gq++r+a+  a +++  +l+lde ++  d    r+    l   +k + +t ++++h       ad +  + dG++v++
  MMETSP1174-20130828|8500_1 170 QVALLFVLLA-FAMFFAVLAKWPFGAASSSFYKRVRMMFFKSMLCQDIAFHDTVPPGVLSAQLSHDLSLIARAHdhATCTKFSIMGNV-AGMLIILLFFSWRMSLvlLVVCPMIAGTGLLTKAWWKKNAGTE-AEELEASLVSEAVSSTRTVTALQM-----QDFINSLYTDALKKPEKDIIRETYITSANSGFSNVITMFCYGLIFSIGAYLKKDDHVTTTQMfvcVFVIMFAAPSIGRQSVNLPDELAAEVAAARM----FRLIDLVPPIDSSSSN---GLKPPSCKGDLELRGVTFAYPTRPDVPIFK--DYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANaHMFVEGfpEKYETQvgergIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQ 665
                 5666666554.57777777777777777777788888888888888777777766666667788888777655411333444444444.3556667778887654114555577777655544444433332.333444443333333333333443.....44555555554444444444455555556678899999999**********999988777651113444444445556666788888888988887....6667777878877777...689999***************998888776..67889****************************************************************99998544333343333344433333321233443113555431111268*******************************************999********************************975 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0     1e-20   7.5e-19      21     207 ..     461     643 ..     452     655 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 1e-20
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarl.niperLWsla...PatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike.akargaaligifh 207
                 +p++k+ s++ve G+ +al G+sG Gkst++  l + Y p++g++l+         v + + +v  +R  ++g vsq   v+   s ++ + +       ++ +a+aka+++   +   pe+  +         sGG kqR+ iara+i+d  iL+Lde t++Ld+   ++v   +++ +ka+  + i + h
  MMETSP1174-20130828|8500_1 461 VPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDG-------VDIRDLNVKWLR-DQMGLVSQEP-VLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVeGFPEKYETQVgerGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNlMKAKTRTTIMVAH 643
                 6889999************************************998765.......466777888888.99******87.999999999998875544444444444444333333146888765441113579********************************99999977665423444444444445 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.4   4.5e-20   3.2e-18       2     199 ..     470     671 .]     469     671 .] 0.85

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 4.5e-20
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvl.sGragliGllrrpkkadfaavadalervklteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelageg.tailmtthdlaeavatcdrvvllngrvvadgapdql 199
                 +v++G+ l+l+G  G Gk+t++  +  +  +++G+v ++g   r    ++ ++  +  +  + p+  + +++ + r g+ G   +   a  +a ++ +    + e  +  vGe    lsGGq+qr+ +ara+  +p++l+lde  + ld  s+  +   + +l +++ ++ +m++h l+  +++ +  v+ +gr+v +g+ ++l
  MMETSP1174-20130828|8500_1 470 RVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIR--DLNVKWLRDQMGLVSQEPVLFAASIMdNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGErgiqLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKtRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQEL 671
                 7899******************99999*************7544..46677888888888888888888888345888888888888888777777777777777777777744444**************************************9999999987651689***************************998875 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.1e-12   5.1e-10     336     487 ..     462     628 ..     445     629 .. 0.75
   2 !   31.4   0.0   2.2e-10   1.6e-08     161     216 ..     584     643 ..     539     652 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 7.1e-12
   TIGR03719 336 lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Getvklayvdqsrdald...d.....nktvweeisdGl....dl.lklgkvevnsrayvgrfnfkGadqqkkvg.elsGGernrvhlakllkeggnvllldePtndldvetlraleeall 487
                  +++d s+++ +g  + ++G  G Gkst++ l+    +p++G++ + G  ++   v   rd++    +       ++ ++i +G+    d+ +  + +  n+  +v  f  k + q  + g +lsGG+++r+ +a+ + ++  +l+lde t  ld e  r ++ al+
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLdGVDIRDLNVKWLRDQMGlvsQepvlfAASIMDNIRHGKsgatDQeVIAAAKAANAHMFVEGFPEKYETQVGERGiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALD 628
                 57999**************************************98733344434555566665311121122246788899777522224313334556788899999998888886554439**********************************9999988886 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 2.2e-10
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekfl....keykGtvvavth 216
                 +lsGG+k+r+a++r ++++P +l+lde t  ld+es   ++  l    k  + t ++v+h
  MMETSP1174-20130828|8500_1 584 QLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALdnlmKAKTRTTIMVAH 643
                 79*********************************9766555540000455566677766 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.3e-19   3.1e-17      10     186 ..     458     644 ..     448     656 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.3e-19
   TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk..tveealekvgLsgled...lpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG.ivllathq 186
                 R    ++++ s+++ +G++l+++G+ G GK+t++ +l     p++G+v l++ ++ + + ++ ++ + l  ++ +  + s+++n+++ ++  ++++   ++++a +++ ++g+ +   + v     qLs Gqk+R+a+ar +++  ++ +LDE t alD e+ ++++++l++ ++    ++++ +h 
  MMETSP1174-20130828|8500_1 458 RPDVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEViaAAKAANAHMFVEGFPEkyeTQVGergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTrTTIMVAHR 644
                 667789**************************************************99999988888888888888899*******99987776665545566667777776644111333233448*****************************************9999876543155666665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   8.8e-19   6.3e-17      15     207 ..     463     667 ..     459     670 .. 0.77

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 8.8e-19
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldg...rewtrkdlkkiGsliesPalyenltarenlkv....rtlllglpesrieevlkivd.....lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiiseGklkyekk 207
                 + ++ s++v+  +  +l+G  G Gkst++ ll  +  +++G++lldg   r+++ k l++   l+ + ++    +  +n++      t  + +  ++  +    v+      e++   +  q+s G kqr+ ia a++++P +l+lde t  ld    + ++  +   ++ k  t i+ +h ls v   ad i ++++G++  ++ 
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGvdiRDLNVKWLRDQMGLVSQEPVLFAASIMDNIRHgksgATDQEVIAAAKAANAHMFVEgfpekYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDnLMKAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGT 667
                 5678899**************************************99444566788888765566555555567999999752222344555566666666666652222133444566779********************************998888877665156678889999*******95.69**********988765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   1.3e-18   9.2e-17      41     251 ..     465     670 ..     460     671 .] 0.86

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.3e-18
   TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaer...rkrveeqlelvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpee 251
                 +d s++ve G  l l+G sG Gks+++  + ++     G+vl+      vd+  ++ + lr+    ++ +v q+  l+   ++ +n+  G   sG +++e+    k +++++ + g+ e  +++vge    lsGG +qr+ +ara+  +  il++de  sald      +q  l +l k   +t ++v+h l   +   + ia++ +Griv +gt +e
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLD----GVDIRDLNVKWLRD----QMGLVSQEPVLFA-ASIMDNIRHGK--SGATDQEViaaAKAANAHMFVEGFPEKYETQVGErgiqLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 67899***********************************9985....47888888877774....7899999987765.89********7..677777762213444555666688888888888777779*************************************************************9998.578**************998 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   1.5e-18   1.1e-16      19     227 ..     465     669 ..     446     671 .] 0.83

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.5e-18
   TIGR03411  19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsld 227
                 +d s++ve+g+  +++G  G Gk+t++ ++     p++G+vl++g d++ l+ +   r  +g   q+p +f   ++++n++   +   +  ++++a  +++++  +e   e  + e+++ ++  +Ls Gqkq++ i+  ++++p++l+lDe ++ + +e ++ +   l +l  ak+r+ ++v h ++ v + a++++v+ +G+++ +G+ +
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKW-LRDQMGLVSQEPVLFA-ASIMDNIRHGKSGA-TDQEVIAAAKAANAHMFVEGFPE--KYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmkAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQ 669
                 78899********************************************998765.566677789***9996.689***99765544.33455555556666666777666..56788999999******************************9977666666666666623467899*********987.6789************865 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     2e-18   1.4e-16      13     221 ..     460     664 ..     446     671 .] 0.79

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 2e-18
   TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld.asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdGqhva 221
                 +v  +++ ++++++G+ ++l Ge G Gkst++ +l   y      G++l +g +++  +++   r  + ++ qe +l    s+++ni  G+  + +  ++  +a    a+ +++    + +++v     +l +Gq+q + ia+a+ k   +l+lde +++l  +  +i+   + +l kak+ + + ++h+l  v   +d i+v+ dG+ v 
  MMETSP1174-20130828|8500_1 460 DVPIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDP--QAGHVLLDGVDIRDLNVKWL-RDQMGLVSQEPVLFA-ASIMDNIRHGKSGATDQEVI-AAAKAANAHMFVEGFPEKyETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLmKAKTRTTIMVAHRLSTVMN-ADSIAVVYDGRIVE 664
                 677788899****************************9965..57**************9865.55678899**99986.69*******98766665333.34444556666655432212233333567889****************************8776666666665543889999**********986.8*********9875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   1.9e-17   1.4e-15      20     218 ..     466     670 ..     454     671 .] 0.77

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 1.9e-17
   TIGR03522  20 evsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkig....alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthimqevealcdrviiinkGkivadkklee 218
                 + s ++e+G+ + ++G  G Gkst++ +l  +  +++G v ++g d+ + +++  r ++G + +   l+    + +  + +++  + +  +  k  ++ +   G+ ++   ++g    +ls G +qr+ +a+a++ dP++l+lde t+ ld +    +++ + ++ k+k  t i+ +h +  v    d + ++  G+iv + + +e
  MMETSP1174-20130828|8500_1 466 DYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIRDLNVKwLRDQMGLVSQEPVLFAASIMDNIRHGKSGATDQEVIAAAKAANAHMFVEGFPEKYETQVGergiQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKtrTTIMVAHRLSTVMN-ADSIAVVYDGRIVEQGTHQE 670
                 568899*****************************************986555278899988777667766666555555555555544444444444444445544444455533348********************************9988888888888866652268999999999975.699999999***99877665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1     3e-17   2.2e-15      18     218 ..     462     667 ..     445     671 .] 0.78

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 3e-17
   TIGR01288  18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips....lle.f.arleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmeeaerlcdrlcvleagrkiaegr 218
                  + +d s  +  g+ + l+g  g gkst+  l+  +  p+ g++ + g ++   +++  r ++g+v+q   l    ++ +n+  +g+    +   i ++  +    ++e f  + e++   r  +lsgg k+r+++ara+i+dp +l+lde t+ ld  +  ++   l  l+ a+ +t ++ +h +       d + v+  gr + +g 
  MMETSP1174-20130828|8500_1 462 PIFKDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIrDLNVKWLRDQMGLVSQEPVLFA-ASIMDNI-RHGKSGATDQEVIAAAKAAnahmFVEgFpEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMkAKTRTTIMVAHRLSTVM-NADSIAVVYDGRIVEQGT 667
                 478999*************************************99888776146899***********888754.4566665.578776666555554433311112221323667777778889*******************************************9987589999999999987664.579999999998777665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.3   5.8e-17   4.2e-15      24     223 ..     471     669 ..     461     671 .] 0.76

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 5.8e-17
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGan.igerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlavarllaqrllvmkqGrvvesGltr 223
                 + pG+ l++vGesG Gkst+++ l     ++aG+v  +  +    +  l+     + lr + Glv q+p      +  ++  G    +++ ++  a+        + + ek e +    +  ++sGG +qr+ iar+++  p ++++ e t  l s   r++   l +l++    ++i+v+h   + + a+ + v+  Gr+ve+G  +
  MMETSP1174-20130828|8500_1 471 VEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVD----IRDLN---V-KWLRDQMGLVSQEPVlfaaSIMDNIRHGKSgATDQEVIAAAKAANAHMFVEGFPEKYETQV-GERGIQLSGGQKQRIAIARAVIKDPTILMLdEATSALDSESERIVqaALDNLMKAKTRTTIMVAHRLSTVMNADSIAVVYDGRIVEQGTHQ 669
                 68*********************************998766....44443...2.3678999*****9972221222333334321223333333333333333444667777666.448899********************99999*********99*99878999***999********555568899**************765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   3.9e-17   2.8e-15     958    1143 ..     476     667 ..     453     671 .] 0.78

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 3.9e-17
   TIGR01257  958 itaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilf.yaqlkgrsweeaqlemeamledtglhhk....rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsi...wdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgt 1143
                    a++g  g gk+t +s+l  +  p +g vl+ g di + n+  +r+ +g++ q  +lf    + + i    +    +    a    +a +   g+  k      e   +lsgg ++++++a a++ d  +++lde ts +d  s r +    d l+k +  rt im +h +    +  d ia++ +gr+   gt
  MMETSP1174-20130828|8500_1  476 TLALVGESGGGKSTVISLLERFYDPQAGHVLLDGVDIrDLNVKWLRDQMGLVSQEPVLFAASIM-DNIRHgKSGATDQEVIAAAKAANAHMFVEGFPEKyetqVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVqaaLDNLMKAK-TRTTIMVAHRLST-VMNADSIAVVYDGRIVEQGT 667 
                  56999********************************447999****************87554.444431333333333334444445444455544411115577889************************************98722246666655.69999*9999975.5899***********99888 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00068     0.049     778     809 ..     463     494 ..     443     509 .. 0.83
   2 !   34.9   0.1     1e-11   7.3e-10     181     296 ..     557     669 ..     528     671 .] 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00068
   TIGR00956 778 lLdevdGwvkPGkltALmGasGAGkttLlnvL 809
                 + ++ +  v+PGk  AL+G+sG Gk t++  L
  MMETSP1174-20130828|8500_1 463 IFKDYSVRVEPGKTLALVGESGGGKSTVISLL 494
                 666677789******************99877 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 1e-11
   TIGR00956 181 akkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkad 296
                 a+k a+  + + G    ++t+vG+  +  +sGG+++R++ia +++ +++i+++D+at  LDs     +  al +  +    t+++ ++  s  +    d + v+y+G+++ +G+ +
  MMETSP1174-20130828|8500_1 557 AAKAANAHMFVEGFPEKYETQVGERGIQ-LSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERIVQAALDNLMKAKTRTTIMVAHRLSTVM--NADSIAVVYDGRIVEQGTHQ 669
                 467788899999***********97665.7********************************99877778899999999999999999988654..46*************99877 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   7.5e-10   5.4e-08     470     641 ..     465     646 ..     453     654 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 7.5e-10
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkp....eegklFyvPqrPYmslgtlRdqiiYPdssedfker...glsdkdLeqiLeevkLedller..eggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEd....klyelakevgitllsvshrks 641
                 ++ s++v+ G+ l ++G  G GKs +  +l  ++   +g    +    ++ ++ +   r  m+l +  + +++  s+ d +++   g +d+++++  +  + +  +e   e     v +    LsgG+kqRia+AR     P   +LDE+tsA+  + E     +l +l+k +  t + v+hr s
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVISLLERFYDPQAGHVLLDgvdiRDLNVKW--LRDQMGLVS-QEPVLFAASIMDNIRHgksGATDQEVIAAAKAANAHMFVEGfpEKYETQVGERGIQLSGGQKQRIAIARAVIKDPTILMLDEATSALDSESERivqaALDNLMKAKTRTTIMVAHRLS 646
                 5667888888888888888888888888888888555543333311112222223..355565554.56677777777776664456778888887777777777764212334457777789*******************************9997751111445566777777788888765 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.37        27     624     651 ..     465     492 ..     461     499 .. 0.87
   2 !   20.1   0.1   4.7e-07   3.4e-05     821     900 ..     577     654 ..     573     668 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.37
   TIGR00630 624 kdidvsiplglltvitGvsgsGkstLin 651
                 kd +v++  g+  ++ G sg Gkst+i 
  MMETSP1174-20130828|8500_1 465 KDYSVRVEPGKTLALVGESGGGKSTVIS 492
                 788999999999999999*****99985 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 4.7e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyi 900
                 ++G+    LsGG  qr+ +a+ + k     t+ +lDe t  L  +  + +   l++l++ k  t +++ h l  + +aD i
  MMETSP1174-20130828|8500_1 577 QVGERGIQLSGGQKQRIAIARAVIK---DPTILMLDEATSALDSESERIVQAALDNLMKaKTRTTIMVAHRLSTVMNADSI 654
                 6899999*************99876...689*************9999999999999763789****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.75u 0.46s 00:00:02.21 Elapsed: 00:00:01.37
# Mc/sec: 646.46
//
Query:       MMETSP1174-20130828|8508_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.25s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 524.39
//
Query:       MMETSP1174-20130828|8516_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.26s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 274.40
//
Query:       MMETSP1174-20130828|8517_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1174-20130828|8522_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.27s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 340.39
//
Query:       MMETSP1174-20130828|8523_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 597.83
//
Query:       MMETSP1174-20130828|8529_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|8530_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 555.13
//
Query:       MMETSP1174-20130828|8524_1  [L=962]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.54
# Mc/sec: 2351.36
//
Query:       MMETSP1174-20130828|8535_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 142.41
//
Query:       MMETSP1174-20130828|8537_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-44  147.8  15.4    1.3e-43  147.1  10.7    1.3  1  TIGR00803 nst: UDP-galactose transporter
  ------ inclusion threshold ------
      0.038   11.3  10.7       0.15    9.4   0.6    2.4  2  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1  10.7   6.1e-47   1.3e-43       3     222 .]     125     353 ..     123     353 .. 0.95

  Alignments for each domain:
  == domain 1    score: 147.1 bits;  conditional E-value: 6.1e-47
   TIGR00803   3 sVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssa......ktlseg.nlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvt.fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 sVP+ ++l qnnl++va+g l+aa++ vT q k     +++  +l ++l +++w+ l +l+ gv ivql + ++       + se+    +g++ +lsa   s +agvyfekilk  + s++ rnlql + +++      ++  d s i +kgff gyt+ +w+ +++n++ggl+vg+v+kyad +tk +++  sii+s+++s  +f+ +++  fa+g+ lv+ +++lY
  MMETSP1174-20130828|8537_1 125 SVPAILYLGQNNLQYVAVGLLDAATYTVTyQTKTIWSGIFSFFLLGRTLKTNKWIGLVMLSAGVGIVQLSSHQQteepteAQASEAsTRYLGFMIILSAAALSSMAGVYFEKILKGVKVSLWTRNLQLATYSVITSiVPLIVTGDWSVIQEKGFFHGYTSMTWLCISMNAGGGLLVGAVIKYADAVTKDVAIGASIIFSSVASSLIFGTEMTQQFAFGAALVIYSVFLY 353
                 9********************************99999********************************99999877665555557899*******************************************998555667778999********************************************************************************9 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.2   0.00062       1.3      81     190 ..     137     267 ..      81     293 .. 0.71
   2 ?    9.4   0.6   7.1e-05      0.15     263     292 ..     325     354 ..     310     358 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00062
   TIGR00817  81 tsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva...................lasltelsfnllgflsamisniefvarnifs..Kkiltkksldklnlyalisililfll 190
                    v++++     + +    + i s + s f+lgr++    ++ L+ +  Gv                     as   l+f ++    a+ s+    +++i+   K  l +++l   +++ + si+ l++ 
  MMETSP1174-20130828|8537_1 137 LQYVAVGLLDAATYTVTYQTKTIWSGIFSFFLLGRTLKTNKWIGLVMLSAGVGivqlsshqqteepteaqasEASTRYLGFMIILSAAALSSMAGVYFEKILKgvKVSLWTRNLQLATYSVITSIVPLIVT 267
                 455666666666666666777788888999999*****9************9999***********95555555555555555555566666666777777732255555567777777777777666665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 7.1e-05
   TIGR00817 263 vvSilffetkisflqvlGvilaiaGvflYs 292
                 v+S l+f+t ++ + ++G++l i  vflY 
  MMETSP1174-20130828|8537_1 325 VASSLIFGTEMTQQFAFGAALVIYSVFLYG 354
                 6789*************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1197.56
//
Query:       MMETSP1174-20130828|8541_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.28s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 335.71
//
Query:       MMETSP1174-20130828|8540_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 515.08
//
Query:       MMETSP1174-20130828|8542_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|8545_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 146.13
//
Query:       MMETSP1174-20130828|8548_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.51
# Mc/sec: 186.34
//
Query:       MMETSP1174-20130828|8544_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.27s 00:00:00.57 Elapsed: 00:00:00.76
# Mc/sec: 588.74
//
Query:       MMETSP1174-20130828|8550_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|8552_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 482.44
//
Query:       MMETSP1174-20130828|8549_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   10.0   0.9       0.11    9.3   0.6    1.3  1  TIGR01035 hemA: glutamyl-tRNA reductase
      0.064   10.2   1.4        0.1    9.6   1.0    1.2  1  TIGR00507 aroE: shikimate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   5.2e-05      0.11     157     204 ..      67     116 ..      61     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.2e-05
   TIGR01035 157 sksavSvssaAvelaekilgs..LkgkkvlliGaGemaeLvakhLkekgv 204
                 +++avSv+ +   la + +g   Lk+++ l+ GaG  ++ va +L ++ v
  MMETSP1174-20130828|8549_1  67 GTGAVSVAGVMSALAVQGIGPeaLKEQRFLIAGAGSAGTGVATALVGAMV 116
                 5799*************998777*******************99987765 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   4.9e-05       0.1     112     138 ..      88     113 ..      62     119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.9e-05
   TIGR00507 112 sklksekrvliiGAGGaakavaleLlk 138
                 + lk e+r+li GAG a+ +va++L+ 
  MMETSP1174-20130828|8549_1  88 EALK-EQRFLIAGAGSAGTGVATALVG 113
                 3566.9******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1513.75
//
Query:       MMETSP1174-20130828|8554_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|8556_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 678.28
//
Query:       MMETSP1174-20130828|8559_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.26s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1174-20130828|8562_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|8561_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-57  190.0   0.0    9.2e-57  189.7   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    3.2e-42  142.7   0.0    3.8e-42  142.4   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.8e-24   81.8   0.1    1.3e-23   81.3   0.1    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
      2e-23   80.9   0.0    2.7e-23   80.5   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      8e-21   72.6   0.0    9.3e-21   72.4   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.4e-18   65.0   0.0    1.9e-18   64.6   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.3e-17   60.7   0.0    5.3e-17   60.1   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.9e-17   60.3   0.0    4.7e-17   60.1   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.5e-17   58.9   0.0    1.2e-16   58.5   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.3e-16   58.4   0.0    1.6e-16   58.2   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.7e-15   53.1   0.0      1e-14   52.5   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.3e-12   45.7   0.0    1.8e-12   45.3   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.6e-12   43.1   0.0    6.7e-12   42.9   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    9.3e-12   42.6   0.0    1.4e-11   42.0   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.5e-11   41.3   0.0    2.9e-11   41.0   0.0    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.5e-11   41.3   0.0    3.6e-11   40.8   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.8e-11   38.8   0.0    1.2e-10   38.4   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.6e-10   38.9   0.0    2.3e-10   38.3   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.3e-10   38.4   0.0    3.4e-10   37.8   0.0    1.2  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.6e-10   37.2   0.0    4.9e-10   36.7   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.7e-10   37.2   0.0    6.6e-10   36.7   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.2e-09   35.8   0.0    1.7e-09   35.3   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.3e-09   35.8   0.0    1.8e-09   35.3   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.4e-09   34.7   0.0      2e-09   34.2   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.7e-09   35.0   0.0    2.5e-09   34.4   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.5e-09   35.0   0.0    3.2e-09   34.7   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.2e-09   34.5   0.0    4.1e-09   34.2   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.5e-09   33.7   0.0    6.3e-09   33.2   0.0    1.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    4.8e-09   33.1   0.0    6.6e-09   32.7   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    7.2e-09   33.4   0.0    1.1e-08   32.8   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.2e-08   31.5   0.1    1.6e-08   31.1   0.1    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.2e-08   31.4   0.0    1.7e-08   31.0   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.1e-08   30.2   0.0    5.5e-08   29.7   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.4e-08   30.4   0.0      8e-08   29.8   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.4e-08   30.0   0.0    1.1e-07   29.4   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.6e-08   29.1   0.0      1e-07   28.6   0.0    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    8.7e-08   28.9   0.0    1.1e-07   28.5   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.2e-07   28.6   0.5    1.7e-07   28.1   0.3    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.5e-07   27.2   0.0    3.6e-07   26.7   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    4.3e-07   27.6   0.0    7.4e-07   26.9   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      5e-07   27.3   0.0    7.3e-07   26.7   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.2e-07   26.8   0.0      9e-07   26.2   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.2e-06   25.2   0.1    3.3e-06   24.6   0.1    1.2  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.6e-06   24.1   0.0    3.2e-06   23.8   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.7e-06   24.8   0.0    3.8e-06   24.3   0.0    1.2  1  TIGR01978 sufC: FeS assembly ATPase SufC
    6.4e-06   22.7   0.0    8.7e-06   22.3   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.6e-05   21.4   0.0    2.2e-05   20.9   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.1e-05   18.6   0.0      7e-05   18.4   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.2e-05   19.9   0.0    0.00013   19.3   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.3e-05   20.0   0.1    0.00016   19.0   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0013   15.2   0.1     0.0021   14.5   0.1    1.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
  ------ inclusion threshold ------
      0.013   10.7   0.0      0.017   10.4   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      0.015   11.7   0.0      0.021   11.2   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      0.028   10.8   0.0      0.038   10.3   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
       0.03    9.5   0.0      0.036    9.3   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.0   1.2e-58   9.2e-57    1992    2250 ..       5     261 ..       2     275 .. 0.95

  Alignments for each domain:
  == domain 1    score: 189.7 bits;  conditional E-value: 1.2e-58
   TIGR01257 1992 tsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkgafqclgtiqhlkskfgdgyivtmkikspkddllpdlnpveqffqgnfpgsvqrerhynllqfqvssss..larifqllvshkdsllieeysvtqttldqvfvnfak 2250
                  tsgda ++  silt+     + +g +pq d + + l+  +h+ l+arlrg+p + ie     +++ + l+ +  + a   sgg kr+ls+ ial+g p +vllde + g+dp arr++wn+i+  +  +r+v+lt+hs ee+ealc+r+ im++g ++c+gt q lk k+g gy v +++k    +    ++ +   f g    +   e h nl++f ++ s   ++++f+ l   kds  ie y v q++l+q+f++fa 
  MMETSP1174-20130828|8561_1    5 TSGDAFISNSSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMV-DRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGKGYEVHIHMKE---NNYTKVKAITSAFVGAHQYAELLESHENLVRFLIPRSCmdISKVFETLENLKDSHAIEFYGVNQSSLEQIFLDFAA 261 
                  8*************************************************************************************************************************99875.79**********************************************998865...567788999999**********************98862268********************************96 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   5.1e-44   3.8e-42      45     300 ..       4     259 ..       2     261 .. 0.91

  Alignments for each domain:
  == domain 1    score: 142.4 bits;  conditional E-value: 5.1e-44
   TIGR01188  45 PdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkveeadetvkeileavk..rnkikissislkepsledvflkl 300
                 P+sG a+++   ++ ++  + + +gvvpq+  + e+L+  +++ l+++l g+p++ +e+     l+ ++l++ + k ++++sgG +rrl+ +++l+ +Pev+ LDE   GLDp +rr +w++i      + +++ltth  eea++l+ r++i+ +Gk+  ++tp+ LK++ gk   ev+ +  ++  ++v++ ++ +   ++++e +e +++ v++ ++++   +++++e+++  +    i+   ++++sle++fl++
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTM-VDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGKGY-EVHIHMKENNYTKVKAITSAFVGAHQYAELLESHENLVRFLIPRSCMDISKVFETLEnlKDSHAIEFYGVNQSSLEQIFLDF 259
                 9**********************************************************99999**********************************************************97654.4789****************************************988.5566655555666666677777777799***************99988888888886224556799999**********987 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.1   1.8e-25   1.3e-23      60     225 ..       8     172 ..       2     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.8e-25
   TIGR01288  60 kitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwer.lrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalide 225
                    + ++ + + a +a   +gvvpq d l + ++  + + +f r  g+  r ie++  s l+   l  +      +lsgg krrl+   al+ +p++++lde + gldp ar l+w+  lr+++   ++++ltth  eeae lc r+ ++ +g+  + g p+ l d+
  MMETSP1174-20130828|8561_1   8 DAFISNSSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIiLRTMVD--RSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDK 172
                 5555566666778889999************************************999999988998887788889****************************************963677765..5799***********************9999***999876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   3.6e-25   2.7e-23      56     223 ..       7     173 ..       3     184 .. 0.92

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 3.6e-25
   TIGR03864  56 geikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaaelaaea 223
                 g+  +  +++ +++ +a++ lGvv q+  l   ls    +r +a L+G++++  e+   ++l++++l++++ + +r+L+GG +rr+    al+ +P+++LlDe + GLD+ +r+ + + + + + +   sv+ +th ++e ea   r+ ++ +Gk++  G++++l+ + 
  MMETSP1174-20130828|8561_1   7 GDAFISNSSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVD--RSVILTTHSTEEAEALcARIGIMIQGKLRCIGTPQRLKDKY 173
                 6666777888899999****************************************999***********************************************************99877755..57899********99627888**************998765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.2e-22   9.3e-21      54     222 ..       4     172 ..       2     260 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.2e-22
   TIGR03522  54 adsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaa 222
                 ++sG ++++++++l+++ ++ k +G +P+ + l++ l   +++++ a l ++ +r+++      ++ + l++ ++k   +ls G ++r     al+ +P+v++lde + GldP     + ++i +  +d++vil+th   e ealc r+ i+ +Gk+    + ++lk +
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDK 172
                 89******************************************************999999999*************************************************9999*************************************99877777766544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   2.5e-20   1.9e-18      45     225 ..       4     177 ..       2     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 2.5e-20
   TIGR01186  45 PtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225
                 Pt+G  +i   +i    +a +     k +++v q+  l    +  d + l  +l +i+e+  +   l +l+ +dl +++ ++  +lsGG ++r+    al  +P+++l+de    ldPl r  + + +  l++ +++++++ th  +ea  l+ ri i+ +G++  +GtP+ +     + y
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSILTDAPAAF-----KCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGKGY 177
                 999999999999999999999.....999********************************************************************************************9998855..8899************************************98766555555 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   7.1e-19   5.3e-17      68     204 ..      23     162 ..       3     173 .. 0.85

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 7.1e-19
   TIGR03740  68 dlkkiGsliesPalyenltarenlkvrtlllglpesrie....evlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklky 204
                  +k +G++ ++  l+e l+  + +++ + l+g+pe  ie    + l+ +dl++ + k a+++s G k+rl   ial+ +P++++lde + GldPl  + + ++i        +vil++h   e e l+  iGi+ +Gkl+ 
  MMETSP1174-20130828|8561_1  23 AFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEatrlSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRT-MVDRSVILTTHSTEEAEALCARIGIMIQGKLRC 162
                 567789999999***********************9998333357999************************************************99999988654.44569*************************975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   6.3e-19   4.7e-17      55     224 ..       3     171 ..       1     223 [. 0.90

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 6.3e-19
   TIGR03265  55 kqdaGaillggr.ditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                  +++G  ++++   +t++p++ +  G+v q  +L+  l   + +    + +++ ++ ++++  + L+ ++l++ + k+   lsGG ++r++ + al+  P+++LLDe    LD   r +L +++  l+  ++   i+ th  eea +l+ ri +m +gk+  +gtP+ + +
  MMETSP1174-20130828|8561_1   3 LPTSGDAFISNSsILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLAR-RLVWNII-LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKD 171
                 567787766665056888889999******************************999999999999999**************************************999***9998.5777764.888999999*******************************98765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.6e-18   1.2e-16      69     237 ..      14     179 ..       3     201 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 1.6e-18
   TIGR03258  69 drdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfva 237
                    lt +p   + l+++ q+  l+  l   + v +  r r  ++ li+     +l  ++l+    ++  +lsGG ++r++   alv +p+v+llde    ld   r  v + +    r + + +v+  th  +ea +l  +i++m +G+l   G++++l d+  +++  
  MMETSP1174-20130828|8561_1  14 SSILTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII---LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGKGYEV 179
                 445899*****************************************999999*******************************************999***99998887665...5678999************************************9998887755 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.1e-18   1.6e-16      22     190 ..       4     171 ..       1     196 [. 0.90

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2.1e-18
   TIGR01187  22 ldsGkilldgedv.tevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                 + sG   +++ ++ t+ pa  + ++vv q+  L+  ++  + v    ++r++p+  i++     L+ ++l++   +   +lsGG ++r++   a+v +P+++LlDe    LD   r  + + +  l+  +   v+l th  eea ++  ri+++ +Gk+  ig+p+ + +
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSIlTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKD 171
                 678888888888737789999**************************************99*********************************************999***98888876543..445566689*******************************98865 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.4e-16     1e-14      52     223 ..       4     174 ..       1     188 [. 0.89

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.4e-16
   TIGR00968  52 pdsGrilleGrd.vtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepa 223
                 p+sG  +++     t   +  + +G v q+  l++ l+  d + +  ++r +++  i a     l+ ++l+k   ++  +lsGG ++r++   al  +p+v+llde    ld   r+    w   l   v+ + ++ th  eea  +  ri ++ +Gk+  +g+++ + d+  
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSiLTDAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRL--VWNIILRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYG 174
                 666766665544146777778889********************************999888899999*********************************************99986..47778888899999********************************9998765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.4e-14   1.8e-12      75     213 ..      21     158 ..       2     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.4e-14
   TIGR02673  75 pllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                 p+  + +gvv q+  l ++ +  + v l  ++rg +e+ i+ +  ++l+ ++l+++  + +++lsgG + R +   a+v +Pe++l De    lD+   + + +++ ++     +vi++th +e +e+  +r+ ++ +g
  MMETSP1174-20130828|8561_1  21 PAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTM-VDRSVILTTHSTEEAEALCARIGIMIQG 158
                 5555779*****************************************************************************************99999999987765.45789*******9999988887766665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0     9e-14   6.7e-12     117     254 ..      36     171 ..      23     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 9e-14
   TIGR03415 117 llPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivl 254
                 l   ++  + v +   l+G++++         l+ ++l++ + k + +lsGG ++r+    a+  + +++l+de    ldPl r  + +    l++ + + +++ +h  +ea  l +ri im +G++  +gtp+ +  
  MMETSP1174-20130828|8561_1  36 LWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNI--ILRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKD 171
                 55556778889999999999999999999999999*************************************************877764..477899***********************************98755 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.9e-13   1.4e-11     139     230 ..      78     169 ..      13     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.9e-13
   TIGR00972 139 kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqi 230
                  k a +LsGG ++rl+   al  +Pev+LlDe +  LDp a + + ++i     +  +++ th+ + a+ +  ++ ++++G+l   g+++++
  MMETSP1174-20130828|8561_1  78 FKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRL 169
                 356899*****************************************************************************988887765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     4e-13   2.9e-11      71     222 ..      21     172 ..       6     222 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 4e-13
   TIGR02142  71 ppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRl..pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222
                 p+  + +g+v qe  L+  ls  + +r   +     er i+  ++  l  ++   +R   +++LsGG k R + g Al+ +Pe++l+De    LD   ++ +   +  l+  ++  +++  Hs +e + l  r+ ++ +G+++ +g+++ +  +
  MMETSP1174-20130828|8561_1  21 PAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFkwARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDK 172
                 555567888888888888888888888777777777778999999888888777766422799**************************999****9999776654..777888899******************************9998765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   4.8e-13   3.6e-11     125     236 ..      63     172 ..      29     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 4.8e-13
   TIGR02315 125 kAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldde 236
                 + l++L+ ++l+++  k a +LsGG + R++   al+ +p+++l DE    LDp + + v +++ r     + +vi++ H+ + a++ + ri  + +g++   g++++l+d+
  MMETSP1174-20130828|8561_1  63 TRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMV--DRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDK 172
                 45789*********************************************************9977654..56899****************999*****999999999886 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.6e-12   1.2e-10     156     265 ..      72     178 ..      57     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.6e-12
   TIGR03269 156 vklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvs 265
                    +hr+ + ar+lsGG k+r+     l+ +p ++l de +  ldp +  lv +++ +++ ++  s++lt+h +e  e l+ +  ++ +G++  +G+p+ + +k+ +  +
  MMETSP1174-20130828|8561_1  72 DLTKHRF-KWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDR--SVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGKGYE 178
                 3334554.5699999999999999999999999999999999999999999999998887765..678999999999999999888889999999999999888876554 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   3.1e-12   2.3e-10     101     229 ..      41     169 ..      21     177 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.1e-12
   TIGR03411 101 alkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 ++ ++ +++a l+   ++  +++  ++l+ + L++++ k a +Ls G k +L  g+ lv +p+++llDe   G+    ++ + +++ +   +rsv++  h  e  ++l +++ ++ +Gk+ + G+ +++
  MMETSP1174-20130828|8561_1  41 SCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRL 169
                 5555666666666666666666666789999*****************************************************************************************999987666 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   4.6e-12   3.4e-10      97     202 ..      67     172 ..      42     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 4.6e-12
   TIGR03771  97 alervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv.vllngrvvadgapdqlqda 202
                 +l+ ++lt+ + +   +lsGG ++r+    al  +p+++llde   Gld  ++ l+ +++      ++++++tth   ea a c r+ +++ g++   g+p+ l+d 
  MMETSP1174-20130828|8561_1  67 TLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRT-MVDRSVILTTHSTEEAEALCARIgIMIQGKLRCIGTPQRLKDK 172
                 6778888888999999*********************************88888888887665.5678999***************967899************995 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   6.6e-12   4.9e-10      84     219 ..      27     160 ..       2     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 6.6e-12
   TIGR02314  84 igmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219
                 +g++ q   l  + +  + v l   l + p+  i+      l  + l++++  +  nlsgg k+r++   al  +p v+l de +  ldp + + + +++      ++ +++l th  +    +c ++ ++ +g+l
  MMETSP1174-20130828|8561_1  27 LGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIIL--RTMVDRSVILTTHSTEEAEALCARIGIMIQGKL 160
                 56666666666666666777788888888888888777777888999**********************************************99998763..345678899*******************99998 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   8.8e-12   6.6e-10      73     220 ..      23     170 ..       3     177 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 8.8e-12
   TIGR03410  73 vkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPv..lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                 + + ++ vpq   +  +l++ + ++l ++ +   e+ i+++ ++      l++ + + + +LsGG +  l+ + aLv +P+++lLDe + G+ P   + + ++i  l++  d +++l  ++ + a +l  r+ ++ +G++   g+ + l+
  MMETSP1174-20130828|8561_1  23 AFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDmdLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRLK 170
                 4577899*******************9999999999999877766655024555555799**********************************9999998888..6777889*************************998877766665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.2e-11   1.7e-09      97     187 ..      53     142 ..      28     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.2e-11
   TIGR01166  97 lGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdv 187
                  G++e  +e+     l+ +d+++ + + ++ lsgG k+r++   a++ +p+v+llde + gldp  ++ + +i+ +     ++v+++th  
  MMETSP1174-20130828|8561_1  53 RGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMV-DRSVILTTHST 142
                 5777888888888999*****************************************************9998766443.46899999976 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.4e-11   1.8e-09      82     219 ..      25     160 ..      18     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.4e-11
   TIGR02982  82 rkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkmedGkl 219
                 + +G++ q+  l e+l   + vr+ + l+    ++  +a+  + l+ + l ++  + +++lsgG k+r++   alv +P++vl de    ld  + r v +++ +   ++  +++l th +     ++ ri  m +Gkl
  MMETSP1174-20130828|8561_1  25 KCLGVVPQEDVLWEALSCDDHVRLFARLRGI-PERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDR--SVILTTHSTEeAEALCARIGIMIQGKL 160
                 5689999********************9876.666667777789**********************************************************99888776..578999976514457778877777776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.6e-11     2e-09     510     684 ..       5     175 ..       2     185 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.6e-11
   TIGR01846 510 ekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnial.akPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvr.aadrilvlekGkivesGkheellakegl 684
                   G  ++ +  +    Pa++ + +gvv qe+vl++  s  d ++l a+     e++i+a++l+  hd+  + k+ ++        +lsGG ++r++   alv+nP +++lde    ld  + +++ + + +   +r vi  +h  +     + ri ++ +Gk+   G+ + l  k g+
  MMETSP1174-20130828|8561_1   5 TSGDAFISNSSILTDAPAAF-KCLGVVPQEDVLWEAlSCDDHVRLfARLRGIPERLIEATRLSTLHDMDLT-KHRFK-----WARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEaLCARIGIMIQGKLRCIGTPQRLKDKYGK 175
                 55566666655554455554.5799********9865899999983555666799*********9997654.44454.....4679*********************************************************98765516************999998888777554 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.4e-11   2.5e-09     395     522 ..      24     147 ..       3     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.4e-11
   TIGR02857 395 rkqiawvpQkPllfeg.tvaenir.larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                  k ++ vpQ+ +l e+ +  + +r +ar     + + ea +   l+++  +          + +++LSgG ++Rl+   al+ + +++llDE    LD+ +   v +++ + +  r+v+l +H+++ ae+
  MMETSP1174-20130828|8561_1  24 FKCLGVVPQEDVLWEAlSCDDHVRlFARLRGIPERLIEATRLSTLHDMDLTKH------RFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEA 147
                 55667777777777654677777755666777777777777777777544432......2357899**********************************************************998775 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   4.3e-11   3.2e-09      55     216 .]       4     160 ..       1     160 [. 0.87

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 4.3e-11
   TIGR00960  55 psaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGkl 216
                 p++G+  +s+  + +    + p   + +G+v q+  l +  +  d v l  r+ G++ r ie     +l+ + l++++ +   +lsgG ++r++   a+v +P+++l de +  ld+   r + +++ +   +   v+++th ++  e    r+  + +Gkl
  MMETSP1174-20130828|8561_1   4 PTSGDAFISNSSILT----DAPAAFKCLGVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRT-MVDRSVILTTHSTEEAEALCARIGIMIQGKL 160
                 566666665555532....456667899******************************************************************************************999999987664.467799*****99988888888887777776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.4e-11   4.1e-09     101     198 ..      70     165 ..      35     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.4e-11
   TIGR01184 101 lvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakige 198
                  ++l++   k   +lsgg k+r++   al   p+++llde    ld l+r  + + +l+ + ++  +v++ th  +ea  l+ r+ ++ +g    ig 
  MMETSP1174-20130828|8561_1  70 DMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDR--SVILTTHSTEEAEALCARIGIMIQGKLRCIGT 165
                 467888888999**********************************************999876..5799********************99888885 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.5e-11   6.3e-09     114     234 ..      51     169 ..      24     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 8.5e-11
   TIGR03005 114 lvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                 + +G++    e+  +  l+ + l++ + ++  +lsGG k+r++   al  +p v+l+de +  ldp     v n++ r     d +++l th    a+ ++ r+  + +Gk+   G p+ +
  MMETSP1174-20130828|8561_1  51 RLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTM--VDRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRL 169
                 5677777777777777777778999999999************************************99******98766..566789**************************9999876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   8.8e-11   6.6e-09     103     256 ..      29     171 ..      17     192 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 8.8e-11
   TIGR00955 103 yvqqddlfiptltvrehLmfsahlr.lkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavk 256
                  v q+d++ + l+ ++h+ + a+lr +++rl + ++       l+++ L+k +         ++ lSgG ++Rl+ +  l+ +P ++++DE   GLD      v +++ +     ++vilt H  + e   l  +i ++ +G+    G+p+++ +
  MMETSP1174-20130828|8561_1  29 VVPQEDVLWEALSCDDHVRLFARLRgIPERLIEATRLST----LHDMDLTKHRFK------WARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVD-RSVILTTHS-TEEAEALCARIGIMIQGKLRCIGTPQRLKD 171
                 577889999999999999999999866777666666544....566777665433......3468*********************************9999888876554444.5699999*6.78889999****************999865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.4e-10   1.1e-08      49     210 ..       3     163 ..       1     166 [. 0.84

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.4e-10
   TIGR01277  49 epasGeikvndkdhtrsapye.rpvsmlfqennlfahltvrqniglGlk.pglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  p+sG+  + + + ++ ap   + + ++ qe+ l+  l+  + + l  +  g+    ++  ++    +++ ++++  +   +lsGG ++r++    lv +  ++llde    ldp+ r+ +  ++ ++    +++++l ths ++a a   ++ ++ +Gk++ +
  MMETSP1174-20130828|8561_1   3 LPTSGDAFISNSSILTDAPAAfKCLGVVPQEDVLWEALSCDDHVRLFARlRGIPERLIEATRLST-LHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMV--DRSVILTTHSTEEAEALCARIGIMIQGKLRCI 163
                 68899999999999998887537888999999999999999999886542355555555555544.35788889989999****************************************9999988765..56899***********************9765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   2.1e-10   1.6e-08     601     688 ..      81     169 ..      58     176 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.1e-10
   TIGR03375 601 GesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrts.lLelvdriivldkGrivadGpkdev 688
                  ++LSgG ++ ++   al+ +p+++lLDE +  lD  + + + + + +++ d+ ++l+tH t+    l+ ri ++ +G++   G+ +++
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEeAEALCARIGIMIQGKLRCIGTPQRL 169
                 589*********************************************************9862567************9998887765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.2e-10   1.7e-08     552     704 ..      24     175 ..       7     181 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.2e-10
   TIGR03796 552 anslalvdqdivlfeg.tvrdnltlwde..tipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgc..tciivaHRLstiRd.cdeiivlerGkvverGtHeellakega 704
                  ++l +v q+ vl+e+ +  d + l+ +   ipe +l++A++  ++hd        ++++  + ++nlsGG + Rl    aLv nP +++lDE    LD+ + + + + + r  +  ++i+ +H        c +i ++ +Gk+   Gt ++l++k g+
  MMETSP1174-20130828|8561_1  24 FKCLGVVPQEDVLWEAlSCDDHVRLFARlrGIPE-RLIEATRLSTLHDMD------LTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVdrSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYGK 175
                 5677788887777776356667888875224554.577888888888853......3333445689*************************************99999887776522566677765544324999999999999999999999987764 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   7.3e-10   5.5e-08     394     563 ..       6     171 ..       3     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 7.3e-10
   TIGR02204 394 sGailldGvdlreldpeelrerlalvpqdsalfaa.svlenir.yGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvl.kadrivvldkGriveqGthaeLia 563
                 sG   +    +    p+ ++  l +vpq+ +l+ a s  + +r + r+    e++++a++ ++ +++  +l      +    + +LsGG k+r++   a++ +  ++LLde    Ld  + +lv + + + m +r  ++  h        + ri ++ +G++  +Gt ++L  
  MMETSP1174-20130828|8561_1   6 SGDAFISNSSILTDAPAAFK-CLGVVPQEDVLWEAlSCDDHVRlFARLRGIPERLIEATRLSTLHDM--DLT----KHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEaLCARIGIMIQGKLRCIGTPQRLKD 171
                 55555555555555555553.4677777777775425666676567777777777777777776664..222....222345779*********************************************************9876641699***********9999998865 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.1e-09     8e-08      79     199 ..      28     147 ..      16     154 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.1e-09
   TIGR03608  79 gylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 g + q+  L e  + ++ ++l   l+ + ++  e +  ++l++++l+k+  k   +lsgG k R++   +l+ ++e++l DE    LD+  r  v +++      ++ +i+ tH++e ae+
  MMETSP1174-20130828|8561_1  28 GVVPQEDVLWEALSCDDHVRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTM-VDRSVILTTHSTEEAEA 147
                 556666777777777777777777777788888888999**********************************************************988765.4688999***9986664 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.5e-09   1.1e-07     120     212 ..      62     152 ..       6     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.5e-09
   TIGR02211 120 erakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl 212
                  +  + l+ ++l k+  k + +lsGG ++r +   alv +P++vl de    ld  + + +++++l+  +  + ++++ th +e a+ l  ++
  MMETSP1174-20130828|8561_1  62 ATRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILR--TMVDRSVILTTHSTEEAEALCARI 152
                 4556679999999999999*********************************************965..6677899*****999888765544 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.4e-09     1e-07     586     676 ..      81     174 ..      58     180 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.4e-09
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn...adrilvleeGrvveqGsyeeLlakeG 676
                 + +lSGG + Rl    alv  P+++l+DE    LD  + ++V + + +  v R vi    ST +    + ri ++ +G++   G+ + L  k G
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAealCARIGIMIQGKLRCIGTPQRLKDKYG 174
                 579*****************************************************99999975434489*****************9988877 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.5e-09   1.1e-07     420     541 ..      55     170 ..      24     173 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.5e-09
   TIGR01842 420 daekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrp.sllelvdkilvlkdGalkafGereevl 541
                  +e++iea +l+  h++ l   +       +   +LsgG + R++   al g+P +v+LDe    LD      + + + +    + +v++ th + ++ +l  +i ++ +G+l+  G+ ++++
  MMETSP1174-20130828|8561_1  55 IPERLIEATRLSTLHDMDLTKHR------FKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDR-SVILTTHSTeEAEALCARIGIMIQGKLRCIGTPQRLK 170
                 46788888888888888654322......355689************************************99999999887766.56666776515677889**************988766 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.3   2.2e-09   1.7e-07     469     529 ..      81     141 ..      59     142 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 2.2e-09
   TIGR02868 469 garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 ++ lSGG ++Rl    aL+ + +v+lLDE + +LD+ +++ + + +l ++ +r v+l th+
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHS 141
                 789*************************************999*****************7 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   4.8e-09   3.6e-07     617     705 ..      83     174 ..      77     181 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 4.8e-09
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmeked 705
                  lsgG k r+    ALv +P v++LDe    LD    +l+ +   +++ +r+v+l +h  + +e  + +i ++ +g+++  Gt ++L++k +
  MMETSP1174-20130828|8561_1  83 NLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNiiLRTMVDRSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYG 174
                 69**************************************99999***************999865899*****************998765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   9.9e-09   7.4e-07      82     189 ..      34     144 ..       4     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 9.9e-09
   TIGR01189  82 dglKaeLsalEnLkfyaallqseqk....tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlg 189
                 d l ++Ls  + ++ +a+l +  ++    t   +l++++L+++    +++Ls G krRl+ +  l+ +  + +LDE    lD  + +l+ +++   +  + +v+l+th   +
  MMETSP1174-20130828|8561_1  34 DVLWEALSCDDHVRLFARLRGIPERlieaTRLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMV-DRSVILTTHSTEE 144
                 566677888888888888887444323224567899*************************************************9998877655443.4479999*98755 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.8e-09   7.3e-07     132     229 ..      66     160 ..      28     170 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 9.8e-09
   TIGR02769 132 ellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                   l+ ++l ++   k  r+lsGG  +r++   al  +P++++lde    ld + +  + +++  l+     ++++ th  + ++ +++r+ ++ +G++
  MMETSP1174-20130828|8561_1  66 STLHDMDLTKHR-FKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKL 160
                 456778887655.5889************************************999998876..88899999**********************9986 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.2e-08     9e-07     122     224 ..      68     169 ..      54     197 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.2e-08
   TIGR03873 122 larvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlella.lvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                 l +++l++   +    lsGG ++r     al  +P+++llde    ld  a+  + + ++r+++     v+++ h  + a ++c ++ ++ +G++   G+p+++
  MMETSP1174-20130828|8561_1  68 LHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNiILRTMV--DRSVILTTHSTEEAEALCARIGIMIQGKLRCIGTPQRL 169
                 5666777777777889********************************8887555551677774..4578999************************9999864 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   4.5e-08   3.3e-06     126     218 ..      67     162 ..      50     174 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.5e-08
   TIGR02323 126 wlekveidaari.kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvve 218
                  l+++++ + r    +++sGG ++rl    +lv +p +v++ e + Gl  +  rl+    l + ++ +vi+ th    a  l+ r+ +m qG++  
  MMETSP1174-20130828|8561_1  67 TLHDMDLTKHRFkWARNLSGGTKRRLSAGIALVGNPEVVLLdELSRGLDPLARRLVWNIILRTMVDRSVILTTHsTEEAEALCARIGIMIQGKLRC 162
                 57778888889845789************************9999***9999999866666666679*******888999************9755 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.3e-08   3.2e-06     609     700 ..      81     174 ..      27     182 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.3e-08
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakk.sdkiivldeGkiieqGshkellkenG 700
                 a ++sgG k+rl+   al+ + +v++lde +  ld l  + + + +l ++ d+++i+ +h  + a+    +i ++ +Gk+   G+ ++l ++ G
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILrTMVDRSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYG 174
                 579*********************************997776666553699**********999986378999999**9988888887776654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.1e-08   3.8e-06     142     241 ..      81     178 ..      59     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.1e-08
   TIGR01978 142 neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgyd 241
                     sGG k+r      ++ +P++++LDe   GlD  a ++v + + +    ++++++ th ++  e++    + ++++G++   G  + +k+   kgy+
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTM-VDRSVILTTHSTEEAEALC-ARIGIMIQGKLRCIGTPQRLKDKYGKGYE 178
                 5568*********9999999************************997654.4899*********999986.6899*****99998888877777777775 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-07   8.7e-06     468     561 ..      81     175 ..      66     186 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.2e-07
   TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGkiverGtheeLlarnGl 561
                 + +LsGG + Rl+   al+ +  +++LDe    LD  + Rlv + + r m +R  ++  h     e    ri ++ +Gk+   Gt + L ++ G 
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYGK 175
                 569*********************************************************8877775367999*******999999999888774 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.9e-07   2.2e-05     400     482 ..      80     161 ..      45     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.9e-07
   TIGR02633 400 piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiykli.nqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482
                    +lsGG +++      l+ np+v++lde +rG+d  a+  ++++i  +++ + v +   s+e ae l  + r+ ++ +Gkl+
  MMETSP1174-20130828|8561_1  80 WARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIIlRTMVDRSVILTTHSTEEAEAL--CARIGIMIQGKLR 161
                 55689******9999999**************************9872578999999999999988876..68999999**997 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.4e-07     7e-05     207     310 ..      81     180 ..      66     254 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.4e-07
   TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs.atalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCp 310
                  R +sGG ++R+s + +lv+++++ ++D+ +rGLD  a  l +   l+t++   + +++++   ++++a  l  ++ ++ +Gk    G+ ++ k+ + k G++ +
  MMETSP1174-20130828|8561_1  81 ARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPlARRLVWNIILRTMV---DRSVILTT-HSTEEAEALCARIGIMIQGKLRCIGTPQRLKDKYGK-GYEVH 180
                 5899*******************************7244455555566654...55555554.577899999999999999999999999888876554.56554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.7e-06   0.00013     121     204 ..      79     160 ..      40     175 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.7e-06
   TIGR02770 121 kypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 k++ +lsGG   R+   +al+ ++ +++ De +  lD  ++  v + +  lr   + +++l th       l   + +m +Gk+
  MMETSP1174-20130828|8561_1  79 KWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNII--LRTMVDRSVILTTHSTEEAEALCARIGIMIQGKL 160
                 56778**********************************999988876..66667889*********99999999******997 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.2e-06   0.00016     111     217 ..      46     151 ..      27     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.2e-06
   TIGR02324 111 vaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvad 217
                 v   ++ +G+++   +a   + l+ ++++++ ++ a    sGG k+R+    al+ +  ++LLde    Ld   r+ v ++i ++  ++  +++    ee+++l+a 
  MMETSP1174-20130828|8561_1  46 VRLFARLRGIPERLIEATRLSTLHDMDLTKHRFKWA-RNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEALCAR 151
                 555566788888888888899999999999999999.889****************8889************************99999999999888998888876 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.8e-05    0.0021     160     216 ..      82     140 ..      62     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.8e-05
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhld..aesvaWlekflkeykGtvvavth 216
                  +lsGG krr++    l+ +P+++llde    ld  a  + W     +  + +v++ th
  MMETSP1174-20130828|8561_1  82 RNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDplARRLVWNIILRTMVDRSVILTTH 140
                 68***************************999995556666654444455566666666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023     0.017    1354    1428 ..      84     159 ..      78     185 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrve.allecqqflviegss 1428
                  ls g k+ +    +++    ++llde s  ldp++ +++ + + +++ + +vil+ h  e a   c ++ ++ + +
  MMETSP1174-20130828|8561_1   84 LSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEeAEALCARIGIMIQGK 159 
                  7888898888889999999**************************************9862444566654444445 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029     0.021     470     564 ..      82     177 ..      25     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00029
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre.adlvlfldqgrliekgsfdeliqkdgrfa 564
                  +lsgg ++rl+   a++ n  +++lde +  ld  +   v + i     +r+ ++ +h           + ++ qg+l   g+ + l +k g+ +
  MMETSP1174-20130828|8561_1  82 RNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDRSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYGKGY 177
                 579***********************************99*****99999**99999997665543123345788999999999999999988865 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00051     0.038     450     527 ..      64     139 ..      59     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00051
   TIGR01194 450 rleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvis 527
                 rl   + +++    +  + +ls G ++rl+   a + +  v+llde +   dp  +r+ ++ +l  +  r  ++++ +
  MMETSP1174-20130828|8561_1  64 RLSTLHDMDLTKHRFKWARNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILRTMVDR--SVILTT 139
                 5666677888888999999****************************************99998776544..445555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00048     0.036     759     856 ..      82     177 ..      63     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00048
   TIGR00957 759 vnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisemgsyqelldrdgafa 856
                  nlsgg k+r+s   a+  + ++ lld+    +d    + +++ ++     + +++ il th+          i ++ +gk+  +g+ q l d+ g   
  MMETSP1174-20130828|8561_1  82 RNLSGGTKRRLSAGIALVGNPEVVLLDELSRGLDPLARRLVWNIILR---TMVDRSVILTTHSTEEAEAlCARIGIMIQGKLRCIGTPQRLKDKYGKGY 177
                 59************************998778887665555554443...3468899*****99876651566779999***99999999999888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        55  (0.0134081); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.66
# Mc/sec: 589.95
//
Query:       MMETSP1174-20130828|8570_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 300.49
//
Query:       MMETSP1174-20130828|8565_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.31s 00:00:00.63 Elapsed: 00:00:00.47
# Mc/sec: 1224.41
//
Query:       MMETSP1174-20130828|8568_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-11   39.3   0.1    8.9e-11   39.3   0.1    2.3  3  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.7     0.031   1.3e+02      90     140 ..      73     123 ..      61     150 .. 0.56
   2 ?   -1.0   0.1     0.039   1.6e+02      72     119 ..     162     209 ..     159     216 .. 0.79
   3 !   39.3   0.1   2.2e-14   8.9e-11     259     338 .]     204     289 ..     190     289 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.031
   TIGR03674  90 eleeRrevreeaeekleealekgdleeaakyakr.....sarldeeivedskkLle 140
                 e     e+++++e +  +a+++ ++e+++ +a++     ++  de+  e+sk+L++
  MMETSP1174-20130828|8568_1  73 E-----ETKRDKEPSTVQAEAQREEEAVTTKAMAtrlptASAADESQRESSKNLMK 123
                 3.....33333333333444444444444444330011145556666666666654 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.039
   TIGR03674  72 gikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaak 119
                 + +p+    G+  e+ ++e ++ ++++ ea ++++e +++++leea+ 
  MMETSP1174-20130828|8568_1 162 ETTPIEEQNGRNMEVDETESDKCKRTKCEAASSMDENTSTDKLEEATD 209
                 555666667888999999999999999999999999999999988865 PP

  == domain 3    score: 39.3 bits;  conditional E-value: 2.2e-14
   TIGR03674 259 lekvlkekeeeie.nldeirelFlnPpvtddYe....lelkkpdkekiieflveehdfseervekalerleka.kkskqktLdawf 338
                 le++ ++   + e    e+r+lF +P+v  + e    +++++pd+e++ +flv+e  f+eerv+++l++l++a  +s+qk++d++f
  MMETSP1174-20130828|8568_1 204 LEEATDDDADKWEpIFIEVRRLFNKPDVLPHQEcqpyIKWSSPDEEGLLSFLVTEMGFNEERVKNGLKKLKDAqGNSAQKRMDSFF 289
                 4444444444444345689********976554334489*********************************977899******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 918.31
//
Query:       MMETSP1174-20130828|8571_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|8569_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.59
# Mc/sec: 977.61
//
Query:       MMETSP1174-20130828|8574_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 504.20
//
Query:       MMETSP1174-20130828|8577_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.24s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1174-20130828|8582_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 328.09
//
Query:       MMETSP1174-20130828|8583_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 382.07
//
Query:       MMETSP1174-20130828|8586_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-86  288.1   3.0    3.3e-56  188.7   0.3    2.0  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    4.3e-72  241.3   1.9    2.7e-45  152.8   0.2    2.0  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    0.00016   18.2   0.0    0.00023   17.7   0.0    1.2  1  TIGR01312 XylB: xylulokinase
     0.0092   12.8   0.0      0.015   12.1   0.0    1.4  1  TIGR01175 pilM: type IV pilus assembly protein PilM


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.1   2.1e-32   2.2e-29     288     374 ..      15     101 ..       4     132 .. 0.94
   2 !  188.7   0.3   3.2e-59   3.3e-56     377     575 ..     145     347 ..     137     369 .. 0.89

  Alignments for each domain:
  == domain 1    score: 100.1 bits;  conditional E-value: 2.1e-32
   TIGR02350 288 elkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlk 374
                    +trakfe+l ++l++r++ pv+ +l da+l ++eid+v+lvGGstriP+++ l+ +++g ep ++vnPde+va Ga +q++vl 
  MMETSP1174-20130828|8586_1  15 GAVITRAKFENLNQHLFQRCMGPVQVVLDDAGLRKKEIDHVVLVGGSTRIPKIRSLITNFFGIEPCQTVNPDEAVAYGATVQAAVLV 101
                 5679*********************************************************************************96 PP

  == domain 2    score: 188.7 bits;  conditional E-value: 3.2e-59
   TIGR02350 377 vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititassg.lseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlke...agdkleeeekekiekaveelkealkeedveek 575
                 +++vlLldv PL+Lg+e +Gg++++li rntt+Ptk++  fsta++nq++v ++v+ Ge   +++n+ lg+f L gipp+ rG+p i v f+id nGil+v+a +++tgke++it++++ g l++eei++m++++e+ + ed++++ + ear ++++++y+a+k+l+     + k++ +++e +++++e+    l+++++ ek
  MMETSP1174-20130828|8586_1 145 LQNVLLLDVAPLTLGVEIKGGIMSPLIPRNTTVPTKRTMQFSTASNNQTSVLVQVYEGENRKTKQNNRLGKFVLAGIPPMKRGKPDILVIFQIDENGILKVTAVEMSTGKEKNITVRNNKGlLTDEEIKQMTEDSERLQFEDHRNQARDEARTRLEDYVYSAKKALATpatLETKFPPDKREFVDTRLENTLLWLEDNEYGEK 347
                 689*****************************************************************************************************************9887726899****************************************7522267899999*99999999999888888887664 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.1   7.6e-29   7.8e-26     266     388 ..       4     129 ..       1     147 [. 0.84
   2 !  152.8   0.2   2.6e-48   2.7e-45     369     539 ..     146     317 ..     135     361 .. 0.91

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 7.6e-29
   TIGR01991 266 evevklegkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrkedllLl.Dvi..PLsLGletmGG 388
                 e++   eg d+ a ++r+++e+l ++l ++ + +v+ +l dagl+++ei++vvlvGGstr+p++r+ ++++F+ ep ++++Pde vA GA++qa +L+  ++++  + +  ++     +G+e +GG
  MMETSP1174-20130828|8586_1   4 EIDSLSEGIDFGAVITRAKFENLNQHLFQRCMGPVQVVLDDAGLRKKEIDHVVLVGGSTRIPKIRSLITNFFGIEPCQTVNPDEAVAYGATVQAAVLVSRNISHGKVAIpRTVtvAEQVGVENFGG 129
                 555555889999*************************************************************************************98877764444413330134578888887 PP

  == domain 2    score: 152.8 bits;  conditional E-value: 2.6e-48
   TIGR01991 369 edllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLl 539
                 +++lLlDv PL LG+e+ GG++  +ipRntt+P++++ +F t  ++qt++ ++v  Ge    +++  L++F L gippm+ G   i v fq+D +G+l+v+a e++tg+e++i+v+++ g L+deei++m +ds +   eD +  a+ e++   e  + + +kal++ + L 
  MMETSP1174-20130828|8586_1 146 QNVLLLDVAPLTLGVEIKGGIMSPLIPRNTTVPTKRTMQFSTASNNQTSVLVQVYEGENRKTKQNNRLGKFVLAGIPPMKRGKPDILVIFQIDENGILKVTAVEMSTGKEKNITVRNNKGlLTDEEIKQMTEDSERLQFEDHRNQARDEARTRLEDYVYSAKKALATPATLE 317
                 589****************************************************************************************************************99988369******************************************9887774 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-07   0.00023     389     441 ..      50     103 ..      16     125 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.2e-07
   TIGR01312 389 lkikeirliGGGaksevwrqiladilgle.vvvpeeeegaalGaAilAaialge 441
                  +i++++l+GG ++ +  r ++ + +g e  ++ + +e++a+Ga ++Aa+  + 
  MMETSP1174-20130828|8586_1  50 KEIDHVVLVGGSTRIPKIRSLITNFFGIEpCQTVNPDEAVAYGATVQAAVLVSR 103
                 57899**********************75389999**************98874 PP

>> TIGR01175  pilM: type IV pilus assembly protein PilM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.5e-05     0.015     280     330 ..      49     100 ..      30     146 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
   TIGR01175 280 eneldrllLaGggaklsgLdaaieqrlgl.ptvvanPfaalaldakvdakal 330
                 ++e+d+++L Gg+  + ++  +i++  g+ p+  +nP +a+a +a v+a +l
  MMETSP1174-20130828|8586_1  49 KKEIDHVVLVGGSTRIPKIRSLITNFFGIePCQTVNPDEAVAYGATVQAAVL 100
                 689*************************989****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1087.59
//
Query:       MMETSP1174-20130828|8587_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   13.1   0.3     0.0031   12.9   0.2    1.0  1  TIGR01857 FGAM-synthase: phosphoribosylformylglycinamidine synthase


Domain annotation for each model (and alignments):
>> TIGR01857  FGAM-synthase: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   7.5e-07    0.0031     529     571 ..       5      46 ..       2      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.5e-07
   TIGR01857 529 kkyeGldGtelaisesqermavvvskedvdkflklaeeenlea 571
                  k e +dG++la+ e  e ma  + +e+ d  lk +++en+ +
  MMETSP1174-20130828|8587_1   5 EKQETVDGADLAVEEQCESMAKFM-EEELDTALKICDDENVAT 46 
                 58899****************876.5889***********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|8585_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.26s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 920.78
//
Query:       MMETSP1174-20130828|8591_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|8589_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.33s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 864.66
//
Query:       MMETSP1174-20130828|8590_1  [L=1245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.69
# Mc/sec: 2381.54
//
Query:       MMETSP1174-20130828|8588_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 1600.63
//
Query:       MMETSP1174-20130828|8593_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
       0.01   13.0   0.0      0.083   10.0   0.0    2.3  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     2e-05     0.083      78     111 ..      24      57 ..       7     114 .. 0.71
   2 ?   -4.2   0.0      0.45   1.8e+03     110     119 ..     266     275 ..     264     278 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2e-05
   TIGR01934  78 akkkakekeeanvefieadaeeLpfednsfdavt 111
                 ++ k+++   a++e ++ada +Lpf d+ f++v 
  MMETSP1174-20130828|8593_1  24 GQTKVSAAGAAPIELVCADALHLPFMDARFSVVL 57 
                 678888887789******************9874 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 0.45
   TIGR01934 110 vtiafGlRNv 119
                 v + fGlR v
  MMETSP1174-20130828|8593_1 266 VPMCFGLRKV 275
                 6799****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.29s 00:00:00.57 Elapsed: 00:00:00.60
# Mc/sec: 719.34
//
Query:       MMETSP1174-20130828|8594_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|8595_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.6   0.1      0.013   12.5   0.0    1.0  1  TIGR00546 lnt: apolipoprotein N-acyltransferase


Domain annotation for each model (and alignments):
>> TIGR00546  lnt: apolipoprotein N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.2e-06     0.013      97     144 ..      13      68 ..       3      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.2e-06
   TIGR00546  97 iasifGvallsflvvllnallalvlkkklk........kkllaivvlllllllgfl 144
                  a++ G+++ +fl++  +a+ + ++ + +k        k ++a v+l+ l++    
  MMETSP1174-20130828|8595_1  13 KADLAGIYFANFLLLGSAACAFTFVLQLHKsktssdseKTIVAGVFLVGLITSMSV 68 
                 599*****************999999988899999966566666666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|8596_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 222.73
//
Query:       MMETSP1174-20130828|8600_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|8603_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|8601_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-39  133.5   0.2    3.2e-39  132.9   0.2    1.2  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    2.4e-27   93.9   0.9    6.9e-25   85.8   0.3    2.1  2  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    9.3e-25   85.6   0.0    1.8e-24   84.7   0.0    1.4  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    2.1e-06   25.7   0.0    3.9e-06   24.8   0.0    1.4  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    2.2e-06   25.2   0.0    3.2e-06   24.6   0.0    1.3  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    2.7e-06   24.8   0.0    4.2e-06   24.2   0.0    1.3  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    5.2e-05   21.0   0.0    8.6e-05   20.3   0.0    1.3  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    0.00011   19.5   0.1    0.00015   19.0   0.0    1.2  1  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    0.00026   18.6   0.0    0.00039   18.1   0.0    1.2  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    0.00094   16.5   0.0     0.0015   15.9   0.0    1.2  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.019   12.3   0.0    1.3  1  TIGR01261 hisB_Nterm: histidinol-phosphatase
      0.024   12.4   2.1      0.022   12.5   0.4    1.7  2  TIGR03351 PhnX-like: phosphonatase-like hydrolase
      0.034   11.7   0.0      0.052   11.0   0.0    1.3  1  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase


Domain annotation for each model (and alignments):
>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.2     1e-41   3.2e-39      84     271 ..       5     196 ..       2     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 132.9 bits;  conditional E-value: 1e-41
   TIGR01452  84 ankkvyviGeeGlreeldekGiryvGdpsekdkkaarksgefm...kleedvgavvvGydkhfdyvklrkasaylre.pgvllvatnrdevtplsdeseipgaGslvaaiktasgrep.lvvGkPsdfmleyikeklsidPartlmvGdrletdilfGkdgGlktvlvlsGvsrleeiqevlaaedddlvPdy 271
                 ++k vyviG  Gl ee+  +G    G +  +   + + +g++      + ++gavv+G d+ ++y k+ k  aylr    + ++atn d+v p  +   +p +G +v  ++ ++gr    vvGkP++ m++ ++e  ++d ar +mvGd l+td+lfG  +G +t+lvlsGvs  e++     +e+ d v d 
  MMETSP1174-20130828|8601_1   5 DTKDVYVIGAAGLVEEIASAGFTCHGLGDSASLPTGQWTGKLEaadLVQSKMGAVVIGVDRDVSYLKMTKGVAYLRRdSTCRFLATNLDSVVPINN-MLVPSNGMVVKGVEFSAGRPVdEVVGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVLSGVSTYEQASSRALTEQPDAVADS 196
                 6799**********************9999998888888888755456789************************86599*************976.678****************74269*********************************************************999999999888775 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.004       1.3      83     105 ..       6      28 ..       2      36 .. 0.87
   2 !   85.8   0.3   2.2e-27   6.9e-25     109     245 ..      55     196 ..      43     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.004
   TIGR01457  83 eksvyviGeeGlkeaikeaGlvv 105
                 +k vyviG +Gl e i  aG++ 
  MMETSP1174-20130828|8601_1   6 TKDVYVIGAAGLVEEIASAGFTC 28 
                 578*****************986 PP

  == domain 2    score: 85.8 bits;  conditional E-value: 2.2e-27
   TIGR01457 109 kpdyvvvGldraisyeklakaalairk..GakfistngdlaipterGllpGnGsliavlevatgvkpv..viGkpeaiilekalkrlGtekeetllvGdnyatdilaGidaGidtllvhtGvtkkeelkdk..eakptyvves 245
                 k   vv+G+dr++sy k++k++ ++r+    +f++tn d  +p ++ l+p nG ++  +e ++g +pv  v+Gkp + +++   ++  +++   ++vGdn +td+l Gi aG +tllv +Gv++ e+ + +  +++p  v +s
  MMETSP1174-20130828|8601_1  55 KMGAVVIGVDRDVSYLKMTKGVAYLRRdsTCRFLATNLDSVVPINNMLVPSNGMVVKGVEFSAG-RPVdeVVGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVLSGVSTYEQASSRalTEQPDAVADS 196
                 45669********************9832579***************************99987.565559*****************************************************9997654116788777777 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   5.7e-27   1.8e-24      81     246 .]       7     174 ..       3     174 .. 0.90
   2 ?   -3.2   0.0       3.9   1.2e+03      57      77 ..     186     210 ..     180     230 .. 0.74

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 5.7e-27
   TIGR01460  81 ervlligegelreslenlgfknvvtvddlrkivedid..v.edleaekiqaavlvgepsdlsydelak.aakllsegkvpfiaaneeklerlgdgafrlglgsilekikeksgree.ivvGKPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLvltG 246
                 + v++ig+  l e++   gf++ +  d++   + +    +  ++  +   +av++g ++d+sy ++ k +a+l+++  ++f+a+n  ++++  ++++++ +g++++ ++ + gr   +vvGKP+  +++ +ee ++ +++r+  +mvGDnl+tDvl++ +aG ++lLvl+G
  MMETSP1174-20130828|8601_1   7 KDVYVIGAAGLVEEIASAGFTCHGLGDSASLPTGQWTgkLeAADLVQSKMGAVVIGVDRDVSYLKMTKgVAYLRRDSTCRFLATN-LDSVVPINNMLVPSNGMVVKGVEFSAGRPVdEVVGKPTTTMIDLLEETANLDRARS--VMVGDNLDTDVLFGIAAGTQTLLVLSG 174
                 68*********************9999998888766665345667777889999*********99888356666666********.8899999******************9998779***********************9..5*************************9 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.9
   TIGR01460  57 vdvspeqiitshsvtkellk....k 77 
                 +  +p+++ +s++v+++ l+    +
  MMETSP1174-20130828|8601_1 186 LTEQPDAVADSVKVLADRLRgldhR 210
                 5678889999999998888766433 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.2e-08   3.9e-06      79     138 ..     111     171 ..      83     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.2e-08
   TIGR01662  79 dvliacp.hs.kceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                 +++ +   ++ ++ + Kp t m++ + + +n +d ++sv+vGD++ tD+ ++ ++G +t lv
  MMETSP1174-20130828|8601_1 111 KGVEFSAgRPvDEVVGKPTTTMIDLLEETAN-LDRARSVMVGDNLDTDVLFGIAAGTQTLLV 171
                 5555555333577788**************7.************************998776 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     1e-08   3.2e-06      62     146 ..     101     182 ..      77     202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1e-08
   TIGR01668  62 llivSNnageqrvkalekelgitvlshavKkpgkafrralkemgltseqvvvvGDrlfTDvllgnrnGsltilveplvhpdeafe 146
                 +l+ SN++    vk++e + g +v +   K++   +   ++  +l     v+vGD l TDvl g   G+ t+lv ++v+  e+  
  MMETSP1174-20130828|8601_1 101 MLVPSNGM---VVKGVEFSAGRPVDEVVGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVLSGVSTYEQAS 182
                 55667766...8999999999999999999999999999999*********************************9998877544 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-08   4.2e-06     156     241 ..      86     172 ..      71     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-08
   TIGR01459 156 pflCanPDrvvvsagrtrygaGelaelfeelGGkvi..yvGkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                  fl +n D vv  + + + + G++   +e   G+ +   vGkP   + d  l+e+ + ++ r ++vGD l tD++ + a+g +t+lvl
  MMETSP1174-20130828|8601_1  86 RFLATNLDSVVPINNMLVPSNGMVVKGVEFSAGRPVdeVVGKPTTTMID-LLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVL 172
                 5788999999999999999999999999977776442369****99987.57889999****************************98 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.7e-07   8.6e-05      73     144 ..      99     169 ..      75     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.7e-07
   TIGR01656  73 lrellrqkGvavdtvflcphkeedlcdcrKPkpglilealkrlgvdasrslvvGDr.ldDvqaarkaGaaayv 144
                   +l+ ++G+ v++v + + ++ d + + KP   +i+   +  ++d  rs++vGD+ ++Dv  + +aG +   
  MMETSP1174-20130828|8601_1  99 NNMLVPSNGMVVKGVEFSAGRPVD-EVVGKPTTTMIDLLEETANLDRARSVMVGDNlDTDVLFGIAAGTQT-L 169
                 455677899999999999988887.4678***************************778**9999999886.4 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.8e-07   0.00015     159     248 ..     106     198 ..      53     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 4.8e-07
   TIGR01458 159 vGpfvkaleyatdika.evvGkPskeffkealralGvepeeavmiGddlvddvGGaqavGmrgvqvrtG..kyrpsdeekievkpdltvdsla 248
                  G  vk +e++++  + evvGkP  +      ++  ++  + vm+Gd+l  dv    a G ++++v +G   y  +  + +  +pd  +ds++
  MMETSP1174-20130828|8601_1 106 NGMVVKGVEFSAGRPVdEVVGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVLSGvsTYEQASSRALTEQPDAVADSVK 198
                 6888999****999874799*******999999999*****************9999*********998334666666777777777776654 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06   0.00039     148     202 ..     125     179 ..     121     200 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.2e-06
   TIGR02253 148 veKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskke 202
                 v KP   +     + ++++   +vmvGD+l++D+  + ++g +t+++  g s  e
  MMETSP1174-20130828|8601_1 125 VGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLVLSGVSTYE 179
                 667777777777788999999**********************977766554443 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06    0.0015     150     196 ..     125     171 ..     121     187 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.6e-06
   TIGR02254 150 iekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtvwl 196
                 + kP   + ++  e ++l + +++mvGD+l++D+  +  aG +t ++
  MMETSP1174-20130828|8601_1 125 VGKPTTTMIDLLEETANLDRARSVMVGDNLDTDVLFGIAAGTQTLLV 171
                 679*******999999*************************999875 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-05     0.019      77     135 ..     102     160 ..      84     172 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-05
   TIGR01261  77 ifkseGivfddvlicphfledncacrkPkiklleeylkkekidkersyviGdr.etdlql 135
                 ++ s+G+v + v      + d++ + kP +++++   +  ++d++rs+++Gd  +td+ +
  MMETSP1174-20130828|8601_1 102 LVPSNGMVVKGVEFSAGRPVDEV-VGKPTTTMIDLLEETANLDRARSVMVGDNlDTDVLF 160
                 46688888888888888888886.569*******99999*************75889876 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   5.5e+02     184     212 ..      35      63 ..      17      68 .. 0.79
   2 ?   12.5   0.4     7e-05     0.022     139     218 ..     121     199 ..     101     204 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.7
   TIGR03351 184 atlvvGvltGasdaeeLsrapathvldsv 212
                 a l  G  tG+ +a++L ++   +v+ +v
  MMETSP1174-20130828|8601_1  35 ASLPTGQWTGKLEAADLVQSKMGAVVIGV 63 
                 66677889999999999999988887665 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 7e-05
   TIGR03351 139 sdvaagRPaPdliyralertgvqdvrsvlvaGDt.anDleaginagatlvvGvltGasdaeeLsrapathvldsvadlpeL 218
                  d + g+P   +i    e ++ + +rsv ++GD   +D+  gi+ag++++  vl+G s+ e+ s    t   d vad +++
  MMETSP1174-20130828|8601_1 121 VDEVVGKPTTTMIDLLEETANLDRARSV-MVGDNlDTDVLFGIAAGTQTL-LVLSGVSTYEQASSRALTEQPDAVADSVKV 199
                 4566788888888665555555555555.56665278*********9987.599999998888877777666666665444 PP

>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017     0.052     106     153 ..     127     174 ..     119     198 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
   TIGR00213 106 kpkpglllqaakelkidleqsfmvGdkle.dlkaglaakvktnvlvrtg 153
                 kp ++++    +  ++d ++s+mvGd l+ d++ g+aa  +t + v +g
  MMETSP1174-20130828|8601_1 127 KPTTTMIDLLEETANLDRARSVMVGDNLDtDVLFGIAAGTQTLL-VLSG 174
                 9999999999999*************98559*****99877644.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 942.34
//
Query:       MMETSP1174-20130828|8604_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 559.82
//
Query:       MMETSP1174-20130828|8597_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.59
# Mc/sec: 1630.85
//
Query:       MMETSP1174-20130828|8606_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-98  328.8   7.3    1.8e-98  328.6   5.0    1.0  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    5.9e-86  287.3   9.9    6.4e-64  214.5   2.3    2.1  2  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    9.7e-56  187.3  12.5    2.4e-38  129.9   4.2    2.3  2  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    5.5e-47  158.1   4.9    1.5e-39  133.6   1.0    2.2  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    3.5e-33  112.6   7.6    4.9e-20   69.1   2.0    2.0  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    5.2e-28   95.3   9.0    6.9e-28   94.9   6.2    1.0  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    2.2e-27   93.3   6.3    2.7e-25   86.4   1.4    2.1  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.4e-25   86.3   9.2      2e-22   76.6   4.0    3.0  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    1.3e-21   74.1   6.2    1.1e-14   51.1   0.9    2.9  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    2.8e-20   69.6   5.5    1.7e-18   63.7   1.8    2.9  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.2e-18   63.9   4.4    6.9e-08   28.3   0.3    3.0  3  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    2.8e-18   63.3   6.8    1.7e-16   57.4   3.2    2.8  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    4.3e-16   55.5   7.8    1.4e-12   43.9   0.2    3.0  3  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.1e-07   29.5   1.4    0.00072   17.0   0.3    2.2  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
    9.2e-07   26.5   0.9    7.3e-05   20.3   0.6    2.2  1  TIGR00338 serB: phosphoserine phosphatase SerB
      2e-06   25.6   5.4     0.0036   15.0   0.8    2.4  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
      7e-05   20.7   0.0    0.00013   19.9   0.0    1.4  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    0.00015   19.6   5.6     0.0003   18.7   3.9    1.4  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
    0.00043   18.3   0.2      0.034   12.0   0.0    2.2  2  TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
    0.00068   16.9   0.4      0.067   10.3   0.0    2.2  2  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
     0.0014   16.2   0.1      0.015   12.9   0.1    2.2  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
     0.0026   15.2   0.2     0.0046   14.4   0.2    1.5  1  TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
  ------ inclusion threshold ------
      0.016   13.1   0.1      0.089   10.6   0.1    2.0  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.088    8.3   8.7       0.18    7.2   0.0    2.8  3  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase


Domain annotation for each model (and alignments):
>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.6   5.0  1.1e-100   1.8e-98     214     560 .]       1     377 [.       1     377 [. 0.94

  Alignments for each domain:
  == domain 1    score: 328.6 bits;  conditional E-value: 1.1e-100
   TIGR01525 214 LglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse.....seeellalaaalessseHplakaivkyake....kslelkkveveeveevpgkgvsakvdge.......eevrigneklleeleaeee...kvkeeleeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi.ide......vvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllpla......llavllmegstvlvvlnslrl 560
                 Lglatp+a++v+ gvaak+G+L+kgg++l+ ++ v++ v+DKTGTLT+++++v+dv+ + d +     s++++lal+aa+e+ seHpl+ ++ ++a e    ++ ++++ eve++ +v+g gv+ k+ +        + v +gn++l+++ ++ ++   +v+  +e+ e++gk vv+v+v+++l++++ l  +lr++a ++++eL++++i+vv+ltGD r +a+a A++lg+   e      vv+e++P+ Kla ++++q+e g++va+vGDGiNDApALa+Ad+Gia+g+g+dva++aADvvl+++ l  + +aid+sr+t  +ik Nl+l++ ynl+ +p aag+++pl+      ++a++ m+ s+vlvv +sl+l
  MMETSP1174-20130828|8606_1   1 LGLATPTAVMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDANhdnafSTDQILALVAAAEQGSEHPLGCSLRDHALEtltaDGQAPPRLEVEDFVAVAGHGVRCKIRDAavaggkwQAVEVGNRHLVTSSNEGKQrlaSVNAIVESMEHDGKVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLgD-EsdegtrVVSEATPDRKLATIAAFQQE-GHVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIKINLALSFLYNLISVPYAAGVFYPLThvalppAAAAFSMACSSVLVVCSSLTL 377
                 89*********************************************************99999999*99***********************999885665566666667****************999999*9**9********999666655569999999*****************************************9999**********************953.22334449*****************65.667**************************************************************************************************************976 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.3   1.8e-24   3.1e-22     227     309 ..       1      93 [.       1     106 [. 0.86
   2 !  214.5   2.3   3.7e-66   6.4e-64     328     541 ..     153     377 ..     119     378 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 1.8e-24
   TIGR01511 227 lGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkel..........sesllalaaaleasseHplakaiv 309
                 lGLA+p++v+v+ g+aak+Gvl+k+g +l+ a+ v++ v+DKTGTLT+ +++v +v+ +          ++++lal+aa+e+ seHpl+ ++ 
  MMETSP1174-20130828|8606_1   1 LGLATPTAVMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIpdanhdnafsTDQILALVAAAEQGSEHPLGCSLR 93 
                 8****************************************************99976422222222225789***************98876 PP

  == domain 2    score: 214.5 bits;  conditional E-value: 3.7e-66
   TIGR01511 328 lgneklleeealktdekeekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi........evlaevlPedKaakvkelqek..kvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvllndl.kdvataielsrktlkkikqNllwalgYNviaipiAagvlvpig.lllsPavaavamalSsvsVvlnalll 541
                  g+++l++ +a+ ++ + ++g+++v+v+++g+l+a++ l  +l+ +a++v++ L++r+i+vv+ltGD + +a+a A++lg+         v++e++P+ K a++++ q++  +va+vGDGiNDapaLa+ad+gia+gagtdva++aadvvl+++l +++  ai++sr+t+ +ik Nl++++ YN+i++p Aagv++p++ ++l+Pa+aa  ma+Ssv Vv+++l+l
  MMETSP1174-20130828|8606_1 153 EGKQRLASVNAIVESME-HDGKVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLgdesdegtRVVSEATPDRKLATIAAFQQEghVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLlMGICFAIDVSRATIYRIKINLALSFLYNLISVPYAAGVFYPLThVALPPAAAAFSMACSSVLVVCSSLTL 377
                 57788888888888555.778888888****************************************************86444444437*****************996558***************************************985389****************************************99************************98 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.3   9.4e-20   1.6e-17     202     282 ..       3      95 ..       1     104 [. 0.86
   2 !  129.9   4.2   1.4e-40   2.4e-38     305     490 ..     173     375 ..     149     379 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 9.4e-20
   TIGR01512 202 isvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdve............alellalvaaveqkssHplaraivea 282
                 +++p a++ + + aa++G+l+kgga l  +  v+  ++DKTGTLT+ +++vsdv+            + ++lalvaa+eq s+Hpl+ +++++
  MMETSP1174-20130828|8606_1   3 LATPTAVMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNlipdanhdnafsTDQILALVAAAEQGSEHPLGCSLRDH 95 
                 79*************************************************9986222222222222569******************99987 PP

  == domain 2    score: 129.9 bits;  conditional E-value: 1.4e-40
   TIGR01512 305 rtivlvaldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG........devhaellPedKveivkelke....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgv.......lplwlavllhegstvlvilnal 490
                 + +v+v+++++l++ ++l  ++r+da+++++eL++  + k+v+ltGD++ +a++ a++lG        + v+ e++P+ K++ ++++++    va+vGDGiNDapaLa+Ad+gia+G +g+dva+++ADvvl+++ l  +  ai+++r t   +k n++l+    l+ +  a+  +       lp+++a++    s vlv+ ++l
  MMETSP1174-20130828|8606_1 173 KVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDI-KVVMLTGDSRLTANAFARRLGlgdesdegTRVVSEATPDRKLATIAAFQQeghvVAFVGDGINDAPALAQADLGIAVG-AGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIKINLALSFLYNLISVPYAAGVFyplthvaLPPAAAAFSMACSSVLVVCSSL 375
                 56899********************************7.77****************9954444433378**************98876555599**********************.9******************************************99998888777655411111114455667777777777777776 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   4.7e-09     8e-07     182     241 ..       3      65 ..       1      83 [. 0.79
   2 !  133.6   1.0   8.5e-42   1.5e-39     288     465 ..     155     347 ..     138     360 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 4.7e-09
   TIGR01494 182 vavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqsg 241
                 +a+++a++vg   +a   +l++   +l+ +  v+v+++DKTGTLT  ++++++v+++ ++++ 
  MMETSP1174-20130828|8606_1   3 LATPTAVMVGCGVAAkqgVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDANHD 65 
                 566666666654443333899*********************************999876555 PP

  == domain 2    score: 133.6 bits;  conditional E-value: 8.5e-42
   TIGR01494 288 lervkkleekleelaseglrtlavaskeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelgl..........farvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiaisA.....kaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465
                  +r+ ++++ +e+++++g  +++v  + +l++++ l  +lr+d+ ++++el++ +ikv+mlTGD++ tA a a++lgl          + + +P+ K++ + +++++g+vva++GDG+NDapAL++Ad Gia++A       aad+vl+++ l+ +  +++ +r t+ rik ++ +++++nli +++++++++
  MMETSP1174-20130828|8606_1 155 KQRLASVNAIVESMEHDGKVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLgdesdegtrvVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGAgtdvaMDAADVVLVQSLLMGICFAIDVSRATIYRIKINLALSFLYNLISVPYAAGVFY 347
                 5788999********************************************************************98644444444448999*****************************************973333267*********************************************998543 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   2.4e-15     4e-13     260     484 ..       9     235 ..       3     246 .. 0.81
   2 !   69.1   2.0   2.9e-22   4.9e-20     518     597 ..     246     325 ..     238     354 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 2.4e-15
   TIGR01647 260 lAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkee.....ldkedvlllaalasreedkda....idtavlkkladlkealekykelefvpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieeeveekveelAerGlRaLgvavadekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtn 484
                 + vG    ak++++ k  +++    gv++   DktGtlt+  +s+++ + + +      ++++++l l a a  +  + +    +    l++l+   +a  ++++ +fv +     r ++     + gk+  v  G  +++ +  + k++++ +v++ ve++ + G   + v+v  e    +l++ ++l+   r+D+ + +++ ++  ++v m+tGD  + a   arrlglg++
  MMETSP1174-20130828|8606_1   9 VMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDAnhdnaFSTDQILALVAAAE-QGSEHPlgcsLRDHALETLTADGQAPPRLEVEDFVAVAGHGVRCKIRDAAVAGGKWQAVEVGNRHLVTSSNEGKQRLA-SVNAIVESMEHDGKVVVFVTV--EG---TLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDE 235
                 5688888899999999999999999********************9987664433456677788776655443.334444011144555666666668999999999*99999999999999999999**************9999999998.9************88777774..33...466666677777**************************************986 PP

  == domain 2    score: 69.1 bits;  conditional E-value: 2.9e-22
   TIGR01647 518 vfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmk 597
                   P+ k   ++a+q++gh+v+  GDG+nDaPaL +Ad GiAv   tD A  aaD+vl+++ l  i  Ai +sR    R+k
  MMETSP1174-20130828|8606_1 246 ATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIK 325
                 56999********************************************************************9888876 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   6.2     4e-30   6.9e-28     280     551 ..      16     305 ..       4     319 .. 0.79

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 4e-30
   TIGR01497 280 varfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvqGadkkkladv......avlasladdtpeGksivelakklgiredtkksesaefveftaktrm.sGinlengravrkGavdai....kkrv.eerkGrip.kdldeavekvakqGgtplvvvvdnkiyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGvdd.......fiaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamnsGtqaakeaanmvdlds 551
                  a+  v+   G +++ a  v + v+dktGt+t  +   ++   +  a++++  ++         a    + p G s+   a + +++ d +   + e ++f a +      ++ +  av  G  +a+    ++ v  +++G+     ++  ve + + G   + v+v+  ++  + l   ++   ++   +lr   ik +mltGd rlta + a+  G+ d        ++eatp+ k++ i   q+eG++va+ GdG ndapalaqad+g+a+ +Gt+ a +aa++v ++s
  MMETSP1174-20130828|8606_1  16 AAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDANHDNAFSTdqilalVAAAEQGSEHPLGCSLRDHALE-TLTADGQAPPRLEVEDFVAVAGHgVRCKIRD-AAVAGGKWQAVevgnRHLVtSSNEGKQRlASVNAIVESMEHDGKVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDesdegtrVVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQS 305
                 5667788889999999*******************999886555444444444430011003333444577888888776654.5778888888899999999765413456666.66777777766333233342456676542689999*****************************************************************99865444455579********************************************************997765 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00043     0.073     239     289 ..       9      59 ..       3      76 .. 0.83
   2 !   86.4   1.4   1.6e-27   2.7e-25     455     602 ..     182     322 ..     141     340 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00043
   TIGR01116 239 lalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklval 289
                 + +G+   ak+  l +   s++    +tv   dktGtlt    sv+ + ++
  MMETSP1174-20130828|8606_1   9 VMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLI 59 
                 556777778888888888999999999*******************99776 PP

  == domain 2    score: 86.4 bits;  conditional E-value: 1.6e-27
   TIGR01116 455 lifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilssftGkefeeleekkalvfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGra.iy 602
                  +++  v+l    r +  d +++ r+  i+v+++tGd + ta+a arr+G+     G e    +++ ++v+s + P +kl ++   ++ +++va  GdG+ndaPal +ad+Gia+G+Gt+va +a+d+vl    +  i +a++  ra iy
  MMETSP1174-20130828|8606_1 182 GTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGL-----GDE----SDEGTRVVSEATPDRKLATIAaFQQEGHVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLLMGICFAIDVSRAtIY 322
                 35566677777889999*********************************7.....666....567899**********99886258889*****************************************************9997255 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0022      0.37     308     346 ..      24      62 ..       4      85 .. 0.72
   2 !   76.6   4.0   1.2e-24     2e-22     462     651 ..     159     325 ..     148     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
   TIGR01522 308 rklpsvetlGsvnvicsdktGtltknhmtvtkiytvdkl 346
                 +   s++    v v   dktGtlt+ + +v+ +  +  +
  MMETSP1174-20130828|8606_1  24 KGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDA 62 
                 5556666677899999***************98766444 PP

  == domain 2    score: 76.6 bits;  conditional E-value: 1.2e-24
   TIGR01522 462 ekiqeeaaemaseGlrvlalasktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavksskeGekldelddqqlsevvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnnik 651
                 ++++ +  +m  +G +v+ + + + + ++f  l+      r d    v++l +  ++v+m+tGds+ ta + arrlGl   +s+eG                   v   a+p+ kl  + a+q++G vva  GdG+ndapal  ad+G+a+G +Gtdva +aad++l++  +  i  ai+  +     ik
  MMETSP1174-20130828|8606_1 159 ASVNAIVESMEHDG-KVVVFVTVEGTLVAFVSLVT---QLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGD-ESDEGT-----------------RVVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVG-AGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIK 325
                 56777788888888.56667677777777776665...568888999******************************953.334443.................355679******************************************.69******************99999998876555555 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.076        13     336     365 ..      27      56 ..       3      73 .. 0.68
   2 !   23.2   0.0   1.8e-08     3e-06     542     614 ..     167     239 ..     156     245 .. 0.88
   3 !   51.1   0.9   6.7e-17   1.1e-14     663     760 ..     242     338 ..     240     367 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.076
   TIGR01106 336 eavetlgstsvicsdktgtltqnrmtvahl 365
                  +++     +v   dktgtlt   ++v+++
  MMETSP1174-20130828|8606_1  27 ASLQVAQGVTVCVMDKTGTLTHSDFSVSDV 56 
                 44444444555568*********9999876 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.8e-08
   TIGR01106 542 gfkfdvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnet 614
                 +++ d + v f + + ++v ++s++   r    d v   r+  ikv+m+tgd  +ta a a+ +g+  e++e 
  MMETSP1174-20130828|8606_1 167 SMEHDGKVVVFVTVEGTLVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDESDEG 239
                 556667778888888999***********************************************99888875 PP

  == domain 3    score: 51.1 bits;  conditional E-value: 6.7e-17
   TIGR01106 663 vfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipe 760
                 v + ++p++kl  + + q+ g +va  gdg+nd+pal +ad+g+a+g ag+dv+ +aad++l++  +  i   ++  r  +  +k  +a ++  n+  
  MMETSP1174-20130828|8606_1 242 VVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVG-AGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIKINLALSFLYNLIS 338
                 556789*****************************************.8*************************999998888888888877777654 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.057       9.7     318     352 ..      17      51 ..       4      64 .. 0.85
   2 !   63.7   1.8   9.9e-21   1.7e-18     508     663 ..     186     323 ..     161     354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.057
   TIGR01524 318 skkkvivkeldaiqnfGamdilctdktGtltqdki 352
                 +k+ v+ k   ++q    + +   dktGtlt+ + 
  MMETSP1174-20130828|8606_1  17 AKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDF 51 
                 68899999999999999999*9*********9776 PP

  == domain 2    score: 63.7 bits;  conditional E-value: 9.9e-21
   TIGR01524 508 GflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandvllGadieelsdeelaaevekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvleegvieGretfgn 663
                  f+++    ++ + + +++l++ +i+v +ltGd+ + ++   + +G+  +           sde        + v +  tp +k   ++++++eGh+v f+GdGindapal +ad+Gi+v + +d+a +a+d++l++  lm +  ++   r t   
  MMETSP1174-20130828|8606_1 186 AFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDE-----------SDE-------GTRVVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLLMGICFAIDVSRATIYR 323
                 45555556667777778888888888888888888888888888776432...........443.......35677889*********************************************************99999877776666666554 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     7e-06    0.0012     431     477 ..      18      64 ..       5      87 .. 0.78
   2 !   21.8   0.0   3.7e-08   6.4e-06     650     697 ..     185     232 ..     178     238 .. 0.88
   3 !   28.3   0.3     4e-10   6.9e-08     782     828 ..     242     288 ..     238     372 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7e-06
   TIGR01657 431 kkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee 477
                 k+g++     ++++a  + v++ DKTGTLT  +  ++ v+++ +a++
  MMETSP1174-20130828|8606_1  18 KQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSDFSVSDVNLIPDANH 64 
                 56666666678889999********************9999988875 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 3.7e-08
   TIGR01657 650 lGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgi 697
                 + ++ l  +l++d+ +v++eL+   i+vvm tGD+ lTa   ar +g+
  MMETSP1174-20130828|8606_1 185 VAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGL 232
                 456667789***********************************9997 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 4e-10
   TIGR01657 782 VfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLs 828
                 V     P+ K   + ++++ + +v+++GDG ND  AL qAd Gi+  
  MMETSP1174-20130828|8606_1 242 VVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVG 288
                 566678**************************************975 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.015       2.6     362     382 ..      36      57 ..      27     100 .. 0.77
   2 !   57.4   3.2   9.7e-19   1.7e-16     535     704 ..     184     339 ..     179     343 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.015
   TIGR01517 362 aiC.sDktGtLtqnvmsvvkgy 382
                 ++C  DktGtLt+   sv  + 
  MMETSP1174-20130828|8606_1  36 TVCvMDKTGTLTHSDFSVSDVN 57 
                 55636**********9998764 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 9.7e-19
   TIGR01517 535 liavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelalegkefrkdkilpklrvlaRssPlDk.qlLvelkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvav 704
                 l+a v     +r ++ + v++ ++  i v m tGD   ta+a ar+ g+  ++    eg+           rv++ ++P  k  ++   ++ g+vva  GDG nDaPaL +ad+G+a+g  Gt+va++a+D++l++     i  a+   Ra    ik  l +    n+++v
  MMETSP1174-20130828|8606_1 184 LVAFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDES---DEGT-----------RVVSEATPDRKlATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGA-GTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRIKINLALSFLYNLISV 339
                 667777777889999999****************************9986544...4554...........7889999988844778899****************************96.6****************************999999988888888888776 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.027       4.6     327     368 ..       9      50 ..       3      63 .. 0.86
   2 !   12.6   0.2   2.3e-05     0.004     540     631 ..     142     232 ..     134     237 .. 0.75
   3 !   43.9   0.2   7.9e-15   1.4e-12     671     754 ..     242     324 ..     233     341 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.027
   TIGR01523 327 mavgakvmvkrrvivrklealealgavtdicsdktgtltqgk 368
                 + vg  v +k+ v+ +   +l+   +vt    dktgtlt   
  MMETSP1174-20130828|8606_1   9 VMVGCGVAAKQGVLFKGGASLQVAQGVTVCVMDKTGTLTHSD 50 
                 56888999999999999***********999********875 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.3e-05
   TIGR01523 540 liikqveslaaeglrvlalaskvidkddv.nitlnrdvaesdlv.flslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgi 631
                 +  +++ + ++eg + la    +++  +   + +   + e  lv f+slv      r+++   v+ +    i+v mltgd   ta a ar +g+
  MMETSP1174-20130828|8606_1 142 VGNRHLVTSSNEGKQRLASVNAIVESMEHdGKVVVFVTVEGTLVaFVSLVT---QLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGL 232
                 556677788889888887766666544330344444556665533777775...6799********************************9986 PP

  == domain 3    score: 43.9 bits;  conditional E-value: 7.9e-15
   TIGR01523 671 viarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdni 754
                 v++  +p+ k+  i a+ +  + va+ gdg+nd+p+l qa++gia+g  g+dva +a+d+vl +  +  i  a++  r  +  i
  MMETSP1174-20130828|8606_1 242 VVSEATPDRKLATIAAFQQEGHVVAFVGDGINDAPALAQADLGIAVGA-GTDVAMDAADVVLVQSLLMGICFAIDVSRATIYRI 324
                 889999*****************************************5.9************************9998766555 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00021     0.036       3      54 ..     177     231 ..     175     236 .. 0.83
   2 !   17.0   0.3   4.2e-06   0.00072     207     249 ..     265     307 ..     255     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
   TIGR00099   3 fiDlDGTLls...kdkeispetkealaklrekGikvvlaTGRsykevkeilkelg 54 
                 f+ + GTL+       ++++ +++++++lr+++ikvv +TG s   +  + ++lg
  MMETSP1174-20130828|8606_1 177 FVTVEGTLVAfvsLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLG 231
                 566779998887778899***********************99877777777666 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.2e-06
   TIGR00099 207 viaiGDseNDieMleaagvgvamgnaneelkaladyvtdsnde 249
                 v+ +GD+ ND++ l  a++g+a+g +++ + ++ad+v  +   
  MMETSP1174-20130828|8606_1 265 VAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVLVQSLL 307
                 5678********************************9876555 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.6   4.3e-07   7.3e-05      90     215 ..     198     310 ..     179     314 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.3e-07
   TIGR00338  90 veelvkkLkekgykvaviSGgFdlvaeklkekLgldavfaNrLevedgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsmikaAglgiafnakp.vlkekadiviekkdltdi 215
                 + ++v++L+ +++kv+++ G  +l a+  + +Lgl           d+   G   +++v+e +  + l ++    + + + +  vGDG nD +++++A+lgia  a   v  ++ad+v+ ++ l++i
  MMETSP1174-20130828|8606_1 198 AVDVVRELRARDIKVVMLTGDSRLTANAFARRLGL----------GDESDEG---TRVVSEATPDRKLATI-AAFQQEGHVVAFVGDGINDAPALAQADLGIAVGAGTdVAMDAADVVLVQSLLMGI 310
                 55666666666666666666666666655555444..........3333333...3444444333333333.233334445667********************99761556778888887777776 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00015     0.026       3      58 ..     175     233 ..     173     253 .. 0.85
   2 !   15.0   0.8   2.1e-05    0.0036     165     203 ..     264     302 ..     250     311 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00015
   TIGR01487   3 lvavDiDgTltd...knrlislraieairklekkGikvvlvtGnevkfvealavligvs 58 
                 +v v + gTl       + +  +a++ +r+l+ + ikvv++tG +   ++a a  +g+ 
  MMETSP1174-20130828|8606_1 175 VVFVTVEGTLVAfvsLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLG 233
                 57788999998875566788999**********************99999988887765 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.1e-05
   TIGR01487 165 evaaiGDsenDldlFrvagfkvavanAddelKeiaDlvt 203
                  va +GD+ nD ++  +a++++av+  +d   ++aD+v 
  MMETSP1174-20130828|8606_1 264 VVAFVGDGINDAPALAQADLGIAVGAGTDVAMDAADVVL 302
                 4899********************************995 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.4e-07   0.00013      66     176 ..     186     280 ..     148     281 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.4e-07
   TIGR01488  66 eflakevairpgarelikwlkekGiklvivSggldflveklaeklgidkvfanelelddnGlltgriegevnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllkl 176
                  f++  + +r++a ++++ l++++ik+v  +g  ++  +++a++lg+ +      e  d G ++      +  + ++K  ++++ ++e+      +++vGD+ nD p+l+ 
  MMETSP1174-20130828|8606_1 186 AFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGD------ES-DEGTRVV-----SEATPDRKLATIAAFQQEGHV----VAFVGDGINDAPALAQ 280
                 4888888999**************************************9......66.5565555.....5799*********76665544....89**********9975 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.9   1.7e-06    0.0003      39     192 ..     148     291 ..     121     303 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.7e-06
   TIGR03351  39 vqeatmGkdKieairallaadgadeekvqaifaeFeerlaelyddaevvalpGveeairdLrskGikvaLttGfdrevaeklleklgWsvgedvDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDtanDleaginagatlvvGvlt 192
                 v+++  Gk++ + ++a++++   + +   ++f+  e +l +++    ++  + + +++r+Lr++ ikv++ tG +r +a++  ++lg  +++d  + v s+        Pd  +++++    q+ + v+ +GD  nD  a  +a  +++vG  t
  MMETSP1174-20130828|8606_1 148 VTSSNEGKQRLASVNAIVES--MEHDGKVVVFVTVEGTLVAFVS-LVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDESDEGTRVVSEA------TPDRKLATIAA-FQQEGHVVAFVGDGINDAPALAQADLGIAVGAGT 291
                 45557899999999999976..5556666789999999999886.5567788999*********************************99988777776653......35554444443.3466678899999999999999999999998755 PP

>> TIGR02461  osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0002     0.034       1      55 [.     175     233 ..     175     244 .. 0.87
   2 ?    4.2   0.0      0.05       8.6     200     227 .]     261     288 ..     250     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0002
   TIGR02461   1 viftDlDgTLld....etyeagpArevleelkdkglevvfvssKtraEqeeyreelgvk 55 
                 v+f+ ++gTL+      t   ++A +v++el++++++vv+ +  +r   + + ++lg+ 
  MMETSP1174-20130828|8606_1 175 VVFVTVEGTLVAfvslVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLG 233
                 79999999998753344667899************************999999999986 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.05
   TIGR02461 200 gaivtvglGDsenDlplleavdlaflvq 227
                 +  v+  +GD+ nD p l + dl + v+
  MMETSP1174-20130828|8606_1 261 EGHVVAFVGDGINDAPALAQADLGIAVG 288
                 34445559**************999885 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.02       3.4       2      56 ..     176     233 ..     175     237 .. 0.76
   2 !   10.3   0.0   0.00039     0.067     195     224 ..     262     291 ..     240     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.02
   TIGR01486   2 iftDlDgtLldehsY...dlgpAkevlerlqelgipvilctSKtaaEveelrkelgle 56 
                 +f  + gtL+   s      ++A  v+++l+++ i+v++ t  ++   +++ + lgl 
  MMETSP1174-20130828|8606_1 176 VFVTVEGTLVAFVSLvtqLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLG 233
                 66666666665433200035799********************999999999999985 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00039
   TIGR01486 195 aikvvglGDspnDlpllevvdlavvvkgkd 224
                   +v  +GD+ nD+p l ++dl + v+   
  MMETSP1174-20130828|8606_1 262 GHVVAFVGDGINDAPALAQADLGIAVGAGT 291
                 4556669*******************9654 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   8.5e-05     0.015      80     191 ..     193     290 ..     181     299 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.5e-05
   TIGR01491  80 klrdeaeevvrlLkekGlktavvsgGislLvkkvaeklqaDyvlsnelvfdekGfvqpdgivrvivdkkgiavkrlkseLnaskeetvavGDskedasifevadlaialgde 191
                 +lrd+a +vvr L+ + +k+ +++g   l ++  a +l+           de+      ++   ++d+k   +  +++e ++    ++ vGD  +da+++  adl ia+g +
  MMETSP1174-20130828|8606_1 193 QLRDDAVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDE------SDEG----TRVVSEATPDRKLATIAAFQQEGHV----VAFVGDGINDAPALAQADLGIAVGAG 290
                 79**********************9999999888888886433......2444....355667899****9********999....9*********************9954 PP

>> TIGR01548  HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   2.7e-05    0.0046     111     192 ..     198     276 ..     126     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.7e-05
   TIGR01548 111 akelldaLtradiavavltGrpsdeadvvLdrvGldilgevrial..dDaaakPnPraliaaaerlgadahsavfvGDtvdDil 192
                 a ++ ++L   di v +ltG ++  a+ +  r Gl++  +    +  + ++++    a iaa ++   + h ++fvGD ++D  
  MMETSP1174-20130828|8606_1 198 AVDVVRELRARDIKVVMLTGDSRLTANAFARRLGLGDESDEGTRVvsEATPDR--KLATIAAFQQ---EGHVVAFVGDGINDAP 276
                 568999**99*************************999876544400444432..2345555555...6677********9965 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00052     0.089     188     221 .]     258     287 ..     155     287 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00052
   TIGR01484 188 lleelnlkkeeilafGDsgNDeemlevaglavav 221
                 + +e +     + ++GD+ ND+++l +a+l++av
  MMETSP1174-20130828|8606_1 258 FQQEGH----VVAFVGDGINDAPALAQADLGIAV 287
                 444444....7899*****************987 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24        41     364     379 ..      39      54 ..      34      73 .. 0.80
   2 ?    7.2   0.0    0.0011      0.18     625     664 ..     186     225 ..     149     238 .. 0.75
   3 ?    3.4   1.7     0.015       2.5     753     812 ..     247     304 ..     238     311 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.24
   TIGR01652 364 fSDKTGTLTqNkmefk 379
                 + DKTGTLT+ + +  
  MMETSP1174-20130828|8606_1  39 VMDKTGTLTHSDFSVS 54 
                 67*******9887665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0011
   TIGR01652 625 gaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAin 664
                 +  ++  +L ++  + +  L+  +ik+ +LTGD   TA +
  MMETSP1174-20130828|8606_1 186 AFVSLVTQLRDDAVDVVRELRARDIKVVMLTGDSRLTANA 225
                 33444457899999********************999976 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.015
   TIGR01652 753 sPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigq 812
                 +P  K a ++  +++  +v+  +gdG ND   + +Ad+G+ + G+    A  a+D  + q
  MMETSP1174-20130828|8606_1 247 TPDRKLATIAAFQQE-GHVVAFVGDGINDAPALAQADLGIAV-GAGTDVAMDAADVVLVQ 304
                 566664444444443.488889*****************986.77777888899988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.88
# Mc/sec: 620.95
//
Query:       MMETSP1174-20130828|8608_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   18.9   7.2    0.00021   18.9   5.0    2.4  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   5.0     5e-08   0.00021      39     140 ..      71     170 ..      51     176 .. 0.78
   2 !    4.2   0.1    0.0015       6.2     103     136 ..     161     194 ..     159     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5e-08
   TIGR03340  39 svLltpyvlwelakvgWsaleaelwlllivsavaqvvYllglaqAYehadvglvYPlaRsl.PvlvaiaatlllgeeLsalaWlGillivlGllvlglskkaq 140
                   L  +y+   ++   ++++ +++w +l++ a+++++  +  ++    + v+ vY l+R    v+va+   ++lg +L++ +W+G+++    ++ ++ s+ ++
  MMETSP1174-20130828|8608_1  71 IPLYYGYL--FFTGTPFPRVSTKMWFILALPALTDMLGTMFAMIGLLYVTVS-VYQLVRCFvIVFVALLKVFVLGSKLKTYNWAGVVMNAFAVVCVSASALND 170
                 22334444..5699999*****************998766666666666666.7*****986899***********************999999988887665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0015
   TIGR03340 103 vaiaatlllgeeLsalaWlGillivlGllvlgls 136
                 v ++a+ l + ++   a +Gi+ i+ G+ v++++
  MMETSP1174-20130828|8608_1 161 VCVSASALNDPDVGDDALFGIMCIITGCAVMATQ 194
                 567777788888889999*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1283.06
//
Query:       MMETSP1174-20130828|8605_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-104  347.1   0.0     3e-104  346.7   0.0    1.1  1  TIGR00430 Q_tRNA_tgt: queuine tRNA-ribosyltransferase
     1e-100  335.0   0.0   1.4e-100  334.6   0.0    1.2  1  TIGR00449 tgt_general: tRNA-guanine transglycosylases, various specificities
    1.1e-19   68.1   0.0    1.3e-09   34.8   0.0    2.2  2  TIGR00432 arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase
  ------ inclusion threshold ------
      0.051   10.2   1.3      0.077    9.6   0.9    1.2  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC


Domain annotation for each model (and alignments):
>> TIGR00430  Q_tRNA_tgt: queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.7   0.0  2.9e-107    3e-104       1     351 [.     228     603 ..     228     604 .] 0.96

  Alignments for each domain:
  == domain 1    score: 346.7 bits;  conditional E-value: 2.9e-107
   TIGR00430   1 felkktdkr..arvGklklehgsvetPvfmPvgtlaavkgldaeelkdleaelilantyhlylrpGeevvkelgglhkfmqfdgailtdsGGfqvfsls......................klrkieeeGvkfkspidGekieltpeksleiqealgsdiimaldectsypadldyaekslertlrWaersleay.drrk....eeqalfgivqGgeykdlreksakdlveldfdGyaiGGlsvGeskedmleileyvipllPkdkPryllGvGtpedlleaiekGvdlfdCvlPtriarngtlfvsegrlkiknakykedtrpvdeeCdCyvCknysraylrhlikakellglrlatlhnlrfllrlvekireailedr 351
                 fel +++k+  arvG+++++hg ++tP+f+Pvgt aa+k+++ae +kd +++l++ ntyh+ ++pG +vv+++gg+hkfm+ d +i+tdsGGfqvfsl+                       l+k++eeG  f+s  +G+ ieltpe s++ q++lgsdii+ lde+++y+   +++++s+  ++rW  rsl a+ ++ +    + qa+++++ Gg+ ++lr  s++ l +l fdGyaiGG s+G+ +e+mle+l + +p lPkdkP +llG+  + ++   +  Gvd  d   Ptriar+gtl+ ++g +ki+   y ed  p+d+e + +    ysr+y++hl+k +e l + la++hnlr++  l+ ++r+ i+ d+
  MMETSP1174-20130828|8605_1 228 FELVHQSKKsgARVGRIHTAHGIINTPAFVPVGTNAALKAVSAEIAKDAKTQLMFVNTYHMLVHPGADVVEKAGGVHKFMNRDDPIITDSGGFQVFSLAstsgedgpelkkkskrnengggTLVKVSEEGTLFRSYHNGKLIELTPESSVAAQKQLGSDIIIPLDELPPYHVSEQRLKESVFLSHRWEARSLLAHlKNPNaaagHRQAMYAVIHGGTNQELRGLSVDYLSSLPFDGYAIGG-SLGKDREEMLELLRWLLPRLPKDKPNHLLGIADIPSVQAVVPLGVDTMDACHPTRIARHGTLLSKQGDVKINSGIYLEDFGPIDPEVETI---PYSRSYVHHLFKQNEPLAMSLASEHNLRWMNALMVDVRAKIMRDE 603
                 56666666667***************************************************************************************99***************************************************************************************9999866624444555689***********************************.**************************************************************************************9876...7***************************************99875 PP

>> TIGR00449  tgt_general: tRNA-guanine transglycosylases, various specificities
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.6   0.0  1.3e-103  1.4e-100       1     349 [.     228     602 ..     228     604 .] 0.96

  Alignments for each domain:
  == domain 1    score: 334.6 bits;  conditional E-value: 1.3e-103
   TIGR00449   1 feikkkdkr..aRvgklktehgsvetPvflPVgtlgavkglkaeelkklgaeiilaNtyhlylrpgekvvkelgglHkfmefdgpiltDSGgfqvfslg......................klreieeeGvkfkspidGekieltpekileiqeelgsDiimalDectppeadydeaekslertlrwaeeslealker......eeqaLfgivqGgtyedLRkksaeelaeldfdgyaiGgvsvgeskedlleileevvpllPkekPryllGvGkpedlleavelGvDlfDcvaparyarngrllvtegriklknakykeDtrpvdeeCdClvCknysraylrhlikanEllglrLateHNlhvllrliekirqaiked 349
                 fe+ +++k+  aRvg+++t+hg ++tP+f+PVgt +a+k+++ae  k+ +++++  Ntyh+  +pg +vv+++gg+Hkfm+ d pi+tDSGgfqvfsl+                       l++++eeG  f+s  +G+ ieltpe +++ q++lgsDii++lDe++p++++ +++++s+ +++rw+ +sl a+ ++      ++qa+++++ Ggt ++LR  s++ l +l+fdgyaiGg s+g+ +e++le l + +p lPk+kP +llG+  + ++   v lGvD  D+  p+r+ar+g+ll+++g +k++   y eD  p+d e +      ysr+y++hl+k nE l + La+eHNl+ + +l+ ++r+ i  d
  MMETSP1174-20130828|8605_1 228 FELVHQSKKsgARVGRIHTAHGIINTPAFVPVGTNAALKAVSAEIAKDAKTQLMFVNTYHMLVHPGADVVEKAGGVHKFMNRDDPIITDSGGFQVFSLAstsgedgpelkkkskrnengggTLVKVSEEGTLFRSYHNGKLIELTPESSVAAQKQLGSDIIIPLDELPPYHVSEQRLKESVFLSHRWEARSLLAHLKNpnaaagHRQAMYAVIHGGTNQELRGLSVDYLSSLPFDGYAIGG-SLGKDREEMLELLRWLLPRLPKDKPNHLLGIADIPSVQAVVPLGVDTMDACHPTRIARHGTLLSKQGDVKINSGIYLEDFGPIDPEVETI---PYSRSYVHHLFKQNEPLAMSLASEHNLRWMNALMVDVRAKIMRD 602
                 56666666556*********************************************************************************************************************************************************************************999866654446777889***********************************.**************************************************************************************9865...7**************************************99877 PP

>> TIGR00432  arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.3e-12   1.3e-09       4      88 ..     233     323 ..     228     332 .. 0.80
   2 !   31.2   0.0   1.6e-11   1.7e-08      93     268 ..     369     548 ..     353     602 .. 0.76

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.3e-12
   TIGR00432   4 kdkdalgrigilktehgrvrtpallpv.inpgkqti..dv.kkfgaeivitnayiiyrslreraled..gvhrlldtdgpvmtdsgsfqls 88 
                 ++k +  r+g+++t hg ++tpa++pv  n + + +  ++ k+  ++++  n+y +      + +e+  gvh++++ d p++tdsg fq+ 
  MMETSP1174-20130828|8605_1 233 QSKKSGARVGRIHTAHGIINTPAFVPVgTNAALKAVsaEIaKDAKTQLMFVNTYHMLVHPGADVVEKagGVHKFMNRDDPIITDSGGFQVF 323
                 4677889********************445666777675537788999******9888755555544339*******************86 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 1.6e-11
   TIGR00432  93 vevknaeiiefqeeiGsdigtsldiPtPPdvdreraeeelevtleraresi.elkee......aklllnavvqGsthpdlrryaakelaklgvdiyPiGavvPlmeayryrdlaevileskselPtskPvhlfGaGh.PmlfalavalGcdlfdsaayalyakddrylteeGtkklee.lklkef 268
                 +e+     +  q+++Gsdi+++ld   P  v+++r +e +  + + +  s     ++       ++ + av+ G t  +lr  + + l+ l++d y iG  +   +     +l + +l     lP  kP hl+G    P + a  v lG d +d+      a+   +l+++G  k++  + l++f
  MMETSP1174-20130828|8605_1 369 IELTPESSVAAQKQLGSDIIIPLDELPPYHVSEQRLKESVFLSHRWEARSLlAHLKNpnaaagHRQAMYAVIHGGTNQELRGLSVDYLSSLPFDGYAIGGSLGK-DREEMLELLRWLL---PRLPKDKPNHLLGIADiPSVQA-VVPLGVDTMDACHPTRIARHGTLLSKQGDVKINSgIYLEDF 548
                 56666677899*************9999********9999877665554431223323555556778899*****************************98753.4545555555555...68***********876265555.69***************************999752556665 PP

>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.9   7.5e-05     0.077     383     487 ..      88     198 ..      81     204 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7.5e-05
   TIGR03998 383 lLeklqlsvee.laegveelkervleeqaeeei....dalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerairrkedeel.kqldkieteL 487
                 +L++l+  v++   e  e+lke++++e++  ++     ++ ++ k++i++alk++k++ a++ +++++    ++a+++k+ve L+  +er+     ++++ ++ + ++++ 
  MMETSP1174-20130828|8605_1  88 DLRRLRSRVNSsTGETKEKLKETIAKEEETYKLmklgPNRASQIKGAITTALKKIKTRQASTAPSVDGPEDVENAQLEKEVEALKAEYERTFGVSYSTVRsNKRRSLKNST 198
                 67777888888777889999999999999999966666789999**********************************************977666554414445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.64
# Mc/sec: 1245.65
//
Query:       MMETSP1174-20130828|8611_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-08   30.6   0.0    3.1e-08   30.5   0.0    1.0  1  TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases
    1.3e-05   21.6   0.0    1.4e-05   21.5   0.0    1.0  1  TIGR01507 hopene_cyclase: squalene-hopene cyclase
    6.2e-05   19.3   0.0    6.2e-05   19.3   0.0    1.0  1  TIGR03463 osq_cycl: 2,3-oxidosqualene cyclase


Domain annotation for each model (and alignments):
>> TIGR01787  squalene_cyclas: squalene/oxidosqualene cyclases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.3e-11   3.1e-08      75     110 ..       1      36 [.       1      37 [] 0.97

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2.3e-11
   TIGR01787  75 lsttveaYvalkllGvsaddpamkrarefilekGgi 110
                 +++t+++Yval+llG   d+p m  +refi+ +Ggi
  MMETSP1174-20130828|8611_1   1 MFGTTLSYVALRLLGLASDHPRMLIGREFIKGQGGI 36 
                 79*********************************8 PP

>> TIGR01507  hopene_cyclase: squalene-hopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     1e-08   1.4e-05      99     129 ..       6      36 ..       2      37 .] 0.93

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1e-08
   TIGR01507  99 eayvalkllGvsadepalkkakefilaqGGi 129
                   yval+llG + d+p +   +efi +qGGi
  MMETSP1174-20130828|8611_1   6 LSYVALRLLGLASDHPRMLIGREFIKGQGGI 36 
                 57****************************8 PP

>> TIGR03463  osq_cycl: 2,3-oxidosqualene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.5e-08   6.2e-05      72     107 ..       2      36 ..       1      37 [] 0.92

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.5e-08
   TIGR03463  72 fvtvlayvalrllGvgkedavlararawlhaqpgGv 107
                 f t+l+yvalrllG+++++  +   r++++ q gG+
  MMETSP1174-20130828|8611_1   2 FGTTLSYVALRLLGLASDHPRMLIGREFIKGQ-GGI 36 
                 89**************************9999.775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.26s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 135.66
//
Query:       MMETSP1174-20130828|8613_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.22s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 608.62
//
Query:       MMETSP1174-20130828|8612_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 469.73
//
Query:       MMETSP1174-20130828|8614_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 863.01
//
Query:       MMETSP1174-20130828|8618_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 620.35
//
Query:       MMETSP1174-20130828|8621_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1174-20130828|8617_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1174-20130828|8619_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-22   75.4   0.0    1.5e-10   39.0   0.0    2.2  2  TIGR00043 TIGR00043: metalloprotein, YbeY/UPF0054 family


Domain annotation for each model (and alignments):
>> TIGR00043  TIGR00043: metalloprotein, YbeY/UPF0054 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.7e-14   1.5e-10       2      65 ..      47     115 ..      46     123 .. 0.81
   2 !   34.2   0.1   1.1e-12   4.5e-09      72     109 ..     150     187 ..     143     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.7e-14
   TIGR00043   2 elsllfvddeeiqelnreyrdkdkpTdVlsFpleeeee.....keeeleeevlGdlvislevvkeqake 65 
                 ++ + + +d+++++ln eyr+k k+Td+lsFp++e        + +  +e +lGd+++s+ +v + +++
  MMETSP1174-20130828|8619_1  47 DVGIWLSSDRNVRRLNTEYRHKRKSTDILSFPFHEDLVpgekpECSIEDELNLGDMILSVPYVGRACAR 115
                 57788999**************************987677653223334489**********9988765 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 1.1e-12
   TIGR00043  72 eelallvvHgllHllGydheeeeeekeMeeleeeiLke 109
                 e + ll++Hgl+Hl Gydhe+++e  eM ++ee++L+ 
  MMETSP1174-20130828|8619_1 150 ERVPLLLIHGLCHLRGYDHEDDDEFLEMVTEEERLLQG 187
                 667899*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 756.26
//
Query:       MMETSP1174-20130828|8620_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 662.70
//
Query:       MMETSP1174-20130828|8624_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.0   0.7      0.026   10.2   0.3    1.5  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0     0.022        92     802     829 ..       6      38 ..       3      40 .. 0.58
   2 ?   10.2   0.3   6.4e-06     0.026      53      94 ..      41      86 ..      36      87 .] 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.022
   TIGR02917 802 dnavvLNNLAwlalerkd.pk....AleyAekA 829
                  ++++ NNL  +++  +  pk    A+e  +kA
  MMETSP1174-20130828|8624_1   6 GHVLAQNNLGVMYASGEGvPKdeikAVEWYKKA 38 
                 566677777777776666665444455555554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 6.4e-06
   TIGR02917 53 pndaeaRflLgkiyle....qGdaaaAekeLrkAlslgyskeqvlp 94
                + + ea + Lg  yl+    q +++ A k ++kA+++gy+++q ++
  MMETSP1174-20130828|8624_1 41 EGHTEAQYNLGVKYLNgqgvQKNIVHAIKWYKKAADQGYADAQFNL 86
                5689*******999865333558999****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|8625_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 176.99
//
Query:       MMETSP1174-20130828|8623_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-91  304.8   0.6    2.1e-91  304.6   0.4    1.0  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.6   0.4     5e-95   2.1e-91       2     413 .]       9     449 ..       8     449 .. 0.94

  Alignments for each domain:
  == domain 1    score: 304.6 bits;  conditional E-value: 5e-95
   TIGR03026   2 kiavvGlGYvGlplaallaek..gheVvgvDidkekveklnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitVpTplkkeg.....eldlsavesaaeeiakvlkkgaivvlkSTvppgtteevvkpileklsglklgedfevavnPEflreGnavedllnpdriviG......eteeaseavaelYesiiekavvlvtsietAeliKlaeNtfravkiafiNelariceklgidvkevieaagldprigknflrpGlGvGGsClpkDplaLlakakelgve..aelieaareiNdsqpervvekvkkal.kklkgkkvlvlGlafKantdDvReSpaldiiekLkekgakvkayDPlveeeevkaaesee.................vsdleealkeadavviltehsefkeldlekiks.lkkaklvvdtrn 413
                 ki+ +G+GYvG p++a++a++   ++V++vD++ +++++ n++k pi epgl e++++  + ++l + t+i+ +i+ead+++i+V+Tp+k++g     +++++  e  a++i +v +  +ivv kSTvp++t   v  ++l+     + g +f+v +nPEfl eG+av dl+np r+ iG      e ++a+e++a++Y++ ++k+ +l+t++ ++e+ Kl++N+f+a +++ iN ++ +ce+ ++dv+ev +a++ d+rig +fl++++G+GGsC+ kD+l L++ a++lg +  +e  +++  +N+ q++r  +++  ++ +++++kk++ +G+afK++t D+ReS +  + + L ++ a v++yDP v+ + + ++ + +                 ++++++a+ +a+a+ ilte++efk+ld+ +i + ++k ++++d+rn
  MMETSP1174-20130828|8623_1   9 KICCMGAGYVGGPTMAIIADNcpDIKVTVVDLSAKQIAAWNSNKLPIFEPGLMEVVERV-RGKNLFFNTNIDAEIQEADIVFISVNTPTKTHGigagrAANIKNCELCARKITEVSTTSKIVVEKSTVPVRTASAVQ-RVLDT---NDKGLSFQVLSNPEFLAEGTAVDDLQNPGRVLIGgplhtpEGQQAIETLASVYAHWVAKERILTTNVWSSEVSKLVANAFLAQRVSSINSISALCEATDADVTEVSRALAFDDRIGSKFLNSSVGFGGSCFQKDILNLVYIAETLGLPevSEYWNQVVLMNEYQKRRFSKMIVGRMfNTVTSKKIAAFGFAFKKDTGDTRESASAFVCRDLLDERAVVHVYDPEVTRDVMLNEMDYTlkvnaatydgldnhlitAANAYDAATGAHAIAILTEWDEFKSLDYTRIYEtMVKPAFIFDGRN 449
                 89*****************9855799******************************888.6666**************************97655555899999999*************************99998.88888...4789***************************9998995545567778899************************************************************************************************987799*********************9999*************************************************99995555444667888899******99999****************************997889999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 1173.76
//
Query:       MMETSP1174-20130828|8630_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   21.9   0.0    4.7e-05   21.4   0.0    1.2  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-08   4.7e-05      35     116 ..      26     111 ..       8     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.1e-08
   TIGR01575  35 llaeeggkvvGyivvqivld.eaeilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNva...AqaLYkklgfkeia 116
                 l+  + +  vG i+ ++  d  a++  i ++ +yqg+ +G  L+++ i  + e ++++++L   e+  +     ++Y+++gf+e+a
  MMETSP1174-20130828|8630_1  26 LFSSDRKASVGKIIFSVGYDkRATLDCISIHDDYQGMQLGPLLIQQCILILSEMDINTLTLCAEEDTRRygrLVSFYRSEGFEETA 111
                 455555667888888887651588999**********************************888887751115679******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 688.82
//
Query:       MMETSP1174-20130828|8628_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.26s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 603.85
//
Query:       MMETSP1174-20130828|8631_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-97  321.8   0.0    3.9e-97  321.5   0.0    1.0  1  TIGR02690 resist_ArsH: arsenical resistance protein ArsH


Domain annotation for each model (and alignments):
>> TIGR02690  resist_ArsH: arsenical resistance protein ArsH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.5   0.0  9.5e-101   3.9e-97      17     219 .]      44     247 ..      34     247 .. 0.98

  Alignments for each domain:
  == domain 1    score: 321.5 bits;  conditional E-value: 9.5e-101
   TIGR02690  17 lkvaaeaehaprilllyGslre.rsysrllaeeaarllealGaevrifdpkglplpddaeedhpkvqelrelsqwseGqvwvsperhGaltgilksqidwiplalGsvrptqGktlavmqvsgGsqsfnavnqlrilGrwlrmltipnqssvakafkefdeagrmkpssyydrvvdvmeelvkftlllrdradylvdryserke 219
                 l+  ++a  +pril+lyGslre r++s++la e arl e lG++vr+fdp+glp+ d a edhpkv elr+ls+wseGq+wvspe+hG++tg +k+qidw+pl++GsvrptqG+  av qv gGsqsfn+vn lr+l rw+rm    nqssvaka++efde grmk+s y+drvvdv+ee+vkf +l+r +++ l dryserke
  MMETSP1174-20130828|8631_1  44 LTKISDAGSPPRILVLYGSLREpRAFSKFLAFEFARLYEGLGCDVRVFDPHGLPMRDPAVEDHPKVAELRALSEWSEGQMWVSPEMHGTMTGAFKNQIDWLPLNTGSVRPTQGRCCAVAQVNGGSQSFNVVNALRLLARWMRMPCCTNQSSVAKAWQEFDECGRMKDSGYRDRVVDVAEEFVKFVILMRSHSASLNDRYSERKE 247
                 667788999************9889**********************************************************************************************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.26s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 698.77
//
Query:       MMETSP1174-20130828|8633_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    8.9   1.6       0.16    8.7   1.1    1.0  1  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.1   3.9e-05      0.16     280     304 ..      18      42 ..      13      51 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.9e-05
   TIGR00442 280 gGGrYDnLveelggekvpavGfaiG 304
                 gGG Y++L++ ++g k  + G a+G
  MMETSP1174-20130828|8633_1  18 GGGSYNELATFYDGGKSGGLGTAFG 42 
                 9***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.23s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|8629_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-189  628.2   0.2   2.9e-189  628.0   0.1    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.6e-33  113.7   0.9    3.1e-20   69.7   0.0    3.1  3  TIGR00484 EF-G: translation elongation factor G
    3.8e-31  105.7   3.7    7.8e-20   68.3   0.1    3.2  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.9e-28   97.0   0.2    7.2e-22   75.3   0.0    2.3  2  TIGR01393 lepA: GTP-binding protein LepA
    6.1e-17   59.3   0.0    9.5e-17   58.6   0.0    1.2  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.7e-14   51.0   0.0    2.4e-12   43.9   0.0    2.2  2  TIGR00503 prfC: peptide chain release factor 3
    1.1e-13   48.6   0.0    1.7e-13   47.9   0.0    1.3  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    3.5e-13   47.5   0.1    6.3e-13   46.7   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    9.8e-12   41.9   0.0    3.3e-11   40.1   0.0    1.8  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.4e-11   40.4   0.0    5.5e-11   39.7   0.0    1.3  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.1e-10   38.9   0.0      2e-10   38.1   0.0    1.4  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.7e-07   27.9   0.0    2.6e-07   27.3   0.0    1.2  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    8.1e-06   23.1   0.0    1.5e-05   22.3   0.0    1.4  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.5e-05   22.0   0.1    0.00013   18.9   0.1    1.9  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0009   16.0   0.0     0.0018   15.0   0.0    1.4  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  628.0   0.1  1.1e-191  2.9e-189      54     594 .]       2     561 ..       1     561 [. 0.95

  Alignments for each domain:
  == domain 1    score: 628.0 bits;  conditional E-value: 1.1e-191
   TIGR01394  54 akntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpe.evvdevfdLfvelgaddeqldfpvvyasakeGvasle.eedesedleplfdailehvpaP...kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkd..........gkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkeg.kkvtsrkirdrLereletnvalrve.eteeadkfevsGrGeLhlsiLietmrreGfelsvskPkvivke.idgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgeiekrkk.GslvsleeGtatayallnleerGklfvspgeevyeGmivGehsreeDldvnvlkekkltnvrssgkdeavkltpprklsLeealeyiedDelvevtPksirlrkkvldekerkr 594
                 +k+t v++kd  in+vDtPGhaDfGGevervlsmvdg++l+vDa+eG+++qt+fv++ka+++gl+ +vv+nk Dr++ar + ev +e+fdL+ +lga+++qldfp++yasakeG+a l+ e+d+  +++pl+ +++  +++P   +  +dep+++ v ++ +d +lG  ++g+v++G v + ++v++l+++          ++ + + is+l +++g+er+e+++a+aGdiv+++G++d+ +++ti+d+ +  +l++  v +Pt+ m+f  nd+PlaG+ g +++ s++i+drL++e+e+nv+++++ + ++ +k ev+GrGeL+++iLie+mrreG+el++s P++++ e  +g+ +ePieeltid++ +++gavie++   ++e+++ ++ g  rvrl f++Psr l+G r+++ +at+G++i+n++f++y+p+kg+ ++++k G lvs+e+Gtat yal++++ rG+lfvspg++vyeGm+vGe+sr+ Dldvn++k+kkltnvr+  +d+a+ l+ppr+  +e+ + y+++De++e+tP+ i lrkk+ld+++r+r
  MMETSP1174-20130828|8629_1   2 SKTTRVEWKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTARLSgEVESEIFDLLCNLGASEDQLDFPILYASAKEGWAVLDlEDDRGMKMDPLLRTLVGAIQPPcdrTSCTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKVHVLTREsasgettappKTPHPQYISHLYVMQGTERMEVESAQAGDIVVLTGVSDVCVSDTICDVTVIDPLDTHPVTPPTMAMSFGANDGPLAGRSGaTFLNSNQIKDRLRKEVENNVTINLHpDPTNGEKLEVHGRGELQFGILIEEMRREGYELTISAPRIVTTEdDEGRVVEPIEELTIDIDTHHSGAVIERMQLVRAEMEEYKEMGPERVRLVFQVPSRLLMGIRADLRQATHGNAIVNAMFTRYDPVKGAASDKSKpGRLVSTETGTATGYALFQIQARGQLFVSPGQDVYEGMVVGENSRPGDLDVNPCKAKKLTNVRTVLADDAAVLVPPRRSGVEDLITYMDTDEMLEITPDRISLRKKILDASARAR 561
                 8******************************************************************************86599***********************************55567899***************5544568***************************************99866643222222344578***********************************************************************984689********************983457789**********************************988578999********************************************************************************998877654*************************************************************************************************************99976 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.1e-22   3.1e-20      65     166 ..       2     107 ..       1     130 [. 0.82
   2 !   29.2   0.0     2e-10   5.5e-08     336     479 ..     195     348 ..     144     355 .. 0.80
   3 !   12.1   0.1     3e-05    0.0082     599     677 ..     358     437 ..     350     444 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 1.1e-22
   TIGR00484  65 saattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveq....lksrldvnavplqlpi 166
                 s +t vewkd+ inl+dtPGh df  ever l ++dGav+v+da  Gv +q++ v  +a + ++  +v +nk d+  a     ve+    l   l++   +l++pi
  MMETSP1174-20130828|8629_1   2 SKTTRVEWKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTARLSGEVESeifdLLCNLGASEDQLDFPI 107
                 6789***********************************************************************9998764433211113445555555565555 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2e-10
   TIGR00484 336 sGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktk.......a...dqekmgialgklaeedPtfkvftdeesgqti.iaGmGelhldiivdrlkrefkvevnvGkPqv 479
                 sG++    ++ + + ++ l  m   +r e+e  +aGdi+ l G+ d+   dt+cd  +   l++  ++ P + ++    +        a   + +++   l k  e++ t   + d+  g+ + + G Gel + i+++ ++re   e  + +P++
  MMETSP1174-20130828|8629_1 195 SGETTAPPKTPHPQYISHLYVMQGTERMEVESAQAGDIVVLTGVSDVCVSDTICDVTVIDPLDTHPVTPPTMAMSFGANDGplagrsgAtflNSNQIKDRLRKEVENNVTINLHPDPTNGEKLeVHGRGELQFGILIEEMRREG-YELTISAPRI 348
                 555555566666678999999************************************9999**9999999999987654431111111212256777778888889999********999988699****************94.5777777766 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3e-05
   TIGR00484 599 llePimkvevevPeeylGdvlGdlsrrrgliegseere.svkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaev 677
                 ++ePi ++++++ +++ G v+  ++  r+ +e  +e + + + +  +vP   ++G  +dlr at+G a     f++y+ v
  MMETSP1174-20130828|8629_1 358 VVEPIEELTIDIDTHHSGAVIERMQLVRAEMEEYKEMGpERVRLVFQVPSRLLMGIRADLRQATHGNAIVNAMFTRYDPV 437
                 78***************************999887765145667889******************************976 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   2.8e-22   7.8e-20      80     155 ..       6      81 ..       1      96 [. 0.91
   2 !   26.5   0.0   1.3e-09   3.5e-07     294     468 ..     158     353 ..     146     358 .. 0.71
   3 !   10.9   0.0     7e-05     0.019     621     698 ..     358     436 ..     353     443 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 2.8e-22
   TIGR00490  80 eyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinel 155
                   e ++++inl+dtpgh dfgg+v r +  vdga++vv+a egvm qt+ v+ +a++  ++ v+ +nk dr    l
  MMETSP1174-20130828|8629_1   6 RVEWKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTARL 81 
                 568899****************************************************************976655 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 1.3e-09
   TIGR00490 294 itkivvdkhagevavgrlysgaikkgsevylvdskaka.............riqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieaknt....k......dlpklievlrkvakedptvkveineetgehl.isgmgelhleiivkkirekagvevetsepivvyret 468
                 + +i+ d   g   +g++ sg +   s+v+++ +++ +              i ++ v+ g er+ev++  ag+iv ++g+ + +  +tic+    i+++++ + ++ p ++++  a +     +      +  ++ + lrk   ++ t++++ +   ge+l + g gel + i ++++r++ g e+ +s p +v  e 
  MMETSP1174-20130828|8629_1 158 VNNISHDIFLGPTVTGKVSSGMVSAKSKVHVLTRESASgettappktphpqYISHLYVMQGTERMEVESAQAGDIVVLTGVSDVCVSDTICDV-TVIDPLDT-HPVTPPTMAMSFGANDGplagRsgatflNSNQIKDRLRKEVENNVTINLHPDPTNGEKLeVHGRGELQFGILIEEMRRE-GYELTISAPRIVTTED 353
                 556666666666666666666666666666665544221111111111111356667889*******************************96.68999986.568899999999987632222211111133456678999999999999999999****9789*************9998.9999999999887765 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 7e-05
   TIGR00490 621 lleplqkvfinvpqdlmgaatreiqnrrgqilemkqeg.dmvtikakvpvaemfgfagairgategralwstefagfek 698
                 ++ep++ + i++     ga++  +q  r ++ e k+ g + v +  +vp + ++g+  ++r at+g+a+    f+ ++ 
  MMETSP1174-20130828|8629_1 358 VVEPIEELTIDIDTHHSGAVIERMQLVRAEMEEYKEMGpERVRLVFQVPSRLLMGIRADLRQATHGNAIVNAMFTRYDP 436
                 78*******************************99998568999*************************9988888775 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   2.6e-24   7.2e-22      68     275 ..      10     249 ..       2     258 .. 0.72
   2 !   19.3   0.0   2.3e-07   6.3e-05     375     475 ..     335     434 ..     329     439 .. 0.91

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 2.6e-24
   TIGR01393  68 eeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadve.rvkkeieevi...Gldaee....ailvsaktGigi...........eelleaivkkvpaPkgd...keaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyev..........eevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtits 275
                 +++ +nl+dtPGh+df  ev r l+  +Ga+l+vda+ Gv +qt   v  a+++ l+ + v+nk d  +a    +v++ei +++   G ++++    ++ +sak+G ++           + ll+++v  + +P +    +++p +  + +  +d + G  v  +v +G ++++ k+++l+ ++              + +  l + + +++ e+++ + G +++ +  v+dv v dti +
  MMETSP1174-20130828|8629_1  10 KDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTARLSgEVESEIFDLLcnlGASEDQldfpILYASAKEGWAVldleddrgmkmDPLLRTLVGAIQPPCDRtscTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKVHVLTRESASGEttappktphpQYISHLYVMQgTERMEVESAQAGDIVV-LTGVSDVCVSDTICD 249
                 56789*****************************************************************9753899***998533366665434446899***987652222221111156899*********8762225699***********************************9876543220000000000222222222223444455555555443.456666666666655 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.3e-07
   TIGR01393 375 lkdgevievenPselpeeekieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyeliey 475
                 +++g +++++ P  + +e+   +v eP+ ++ti + +++ ga++e +q  r+++++ + +++erv lv+++P + +++     l+  ++G a ++  +++y
  MMETSP1174-20130828|8629_1 335 RREGYELTISAPRIVTTEDDEGRVVEPIEELTIDIDTHHSGAVIERMQLVRAEMEEYKEMGPERVRLVFQVP-SRLLMGIRADLRQATHGNAIVNAMFTRY 434
                 56788999****************************************************************.7899999999999999999877666655 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   3.5e-19   9.5e-17      75     247 ..      12     190 ..       2     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 3.5e-19
   TIGR00485  75 rhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgd..dvpivrgsalk...alegdaeweekilelmeavdeyiptp.ere..vdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivg 247
                      vd pghad+  ++    + +dga+lvv a++g+m qt+  +  a ++g+ ++vv lnk d  d   l   ve e+ +ll + + + d  d pi++ sa +    l+ +++   k+  l+ ++   i+ p +r+  +d+pf +a++++      g  vtg+v  g+v    +v+++ 
  MMETSP1174-20130828|8629_1  12 HFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGL-HFVVVLNKADR-DTARLSGEVESEIFDLLCNLGASEDqlDFPILYASAKEgwaVLDLEDDRGMKMDPLLRTLVGAIQPPcDRTscTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKVHVLT 190
                 344579************999**********************99999999998.57788*****7.7789999************9988774478******976222466777888899999988888887663443338***********999999*****************999875 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.8e-15   2.4e-12      74     147 ..       6      79 ..       1     107 [. 0.87
   2 !    4.9   0.0    0.0059       1.6     340     379 ..     210     249 ..     198     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 8.8e-15
   TIGR00503  74 qfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdir 147
                 + +++d ++nl+dtpGh df  +  r l+ vd a++v+da+ Gv ++t+ ++  +    l  +  lnk drd+ 
  MMETSP1174-20130828|8629_1   6 RVEWKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTA 79 
                 56899********************************************99998888899999999***99964 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0059
   TIGR00503 340 lsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtq 379
                 +s+   +   +r +ve a aGdi+ l     + + dt+ +
  MMETSP1174-20130828|8629_1 210 ISHLYVMQGTERMEVESAQAGDIVVLTGVSDVCVSDTICD 249
                 6776777788*************************99865 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   6.4e-16   1.7e-13      47     209 ..       9     186 ..       5     194 .. 0.71

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 6.4e-16
   TIGR00475  47 ledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflk...nakivkvsAktGqGieeLkke........lknLlesld.....akdkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDel 209
                  +d+ ++l+D PGH  f  ++   ++ +d+a+Lvvda eGv++qtk  +  +  +g++  +vvl+KaDr    +  evE+e+ ++l + +      +  i+  sAk+G  + +L ++        l+ L+  ++     ++  ++p+r+a++++ +    G  vtG + sG v    ++
  MMETSP1174-20130828|8629_1   9 WKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLH-FVVVLNKADRDTARLSGEVESEIFDLLCNLGASEdqlDFPILYASAKEGWAVLDLEDDrgmkmdplLRTLVGAIQppcdrTSCTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKV 186
                 567889***************************************9877777777777.9*********9999999******999876655431116789999****988887765322222222333333332111112234566666666666656666666666666666666555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   2.3e-15   6.3e-13      54     131 ..      13      84 ..       2      98 .. 0.88

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2.3e-15
   TIGR00231  54 kvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktk 131
                  +nl+DT+G++df         ever+l++vd+++lv+d+ eg+++qtk +   a ++g  +++v+nK D  +  l+ +
  MMETSP1174-20130828|8629_1  13 FINLVDTPGHADF-------GGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTaRLSGE 84 
                 58***********.......***********************************99*************988655444 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   1.2e-13   3.3e-11      82     261 ..       9     187 ..       3     200 .. 0.82
   2 ?   -1.8   0.0      0.64   1.8e+02      55      78 ..     287     310 ..     278     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1.2e-13
   TIGR00483  82 tdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekf.eelkkevsellkkvgykpdevef..ipvsaykgdnvvkksenapwykgktllealdkleap...ekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvv 261
                  + + + +vd+pgh df  ++    s  d avlvv++++g   v++qt+  v  a  +g++  +v +nk d+      +   e+  e+ +ll  +g   d+++f  +  sa +g  v++  ++      + l   + ++++p      +d p+r+ ++++ +   +g    g+v +g++   +kv 
  MMETSP1174-20130828|8629_1   9 WKDHFINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEG---VMSQTKFVVSKAINMGLHF-VVVLNKADRD---TARLsGEVESEIFDLLCNLGASEDQLDFpiLYASAKEGWAVLDLEDDRGMKMDPLLRTLVGAIQPPcdrTSCTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKVH 187
                 5567789********************************9...****************985.5679**9984...44441689999**************999535568999*9**99999998887666656666667663225679***********99999**999********99887773 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.64
   TIGR00483  55 efayvldklkeerergvtidvahk 78 
                 + + + d+l++e e  vti++   
  MMETSP1174-20130828|8629_1 287 NSNQIKDRLRKEVENNVTINLHPD 310
                 456688*************98655 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     2e-13   5.5e-11     129     211 ..       7      89 ..       4     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2e-13
   TIGR00487 129 vekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpD.rvkqel 211
                 ve +d+  i ++DtPGh+ f     r   + D +vlvv a +Gv+ qt+  ++ a + +   +v++nk D+++a     v+ e+
  MMETSP1174-20130828|8629_1   7 VEWKDH-FINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTARLSgEVESEI 89 
                 565666.89***************************************************************997532455554 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   7.3e-13     2e-10      81     257 ..      12     193 ..       8     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 7.3e-13
   TIGR02034  81 kfi.vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkid..lvdydeevfeeikkdylalaeklgvsdvtviPlsalkGdnvveksesmpWyeGptllevletvev...eesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgr 257
                 +fi + dtPGh  +  ++    s  d avl+vda +Gv++qt+   + a  +G++ +v+ +nk d      + ev +ei +   +l ++ ++ d+ ++  sa++G  v +  +       p l  ++ +++    ++s ++e++r+ v+ ++ +       +G + sG v+   +v+vl    
  MMETSP1174-20130828|8629_1  12 HFInLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLH-FVVVLNKADrdTARLSGEVESEIFDLLCNLGASEDQLDFPILYASAKEGWAVLDLEDDRGMKMDPLLRTLVGAIQPpcdRTSCTDEPFRFAVNNISHDIFLGPTVTGKVSSGMVSAKSKVHVLTRES 193
                 566578*************************************99999999**95.6667999872256778899999999999999999999****************99999999999988888888875211446899**********98887777799***************997654 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   9.3e-10   2.6e-07      71     133 ..      14      76 ..       1      93 [. 0.90

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 9.3e-10
   TIGR00491  71 llvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 + ++dtPGh  f     r  ++ d a+lvvd  eG+  qt+  v+   ++   fvv  nk dr
  MMETSP1174-20130828|8629_1  14 INLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADR 76 
                 5589**********************************************************8 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.3e-08   1.5e-05      82     149 ..      13      78 ..       3     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.3e-08
   TIGR03680  82 kvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigi.knivivqnkidlvs 149
                  + +vD+PGh  +   +    +++dga+Lv++a+e v ++qtk   v+ + i++  ++v+v nk d  +
  MMETSP1174-20130828|8629_1  13 FINLVDTPGHADFGGEVERVLSMVDGAVLVVDATEGV-MSQTKF--VVSKAINMgLHFVVVLNKADRDT 78 
                 5899*********999999999***************.9***84..4444444425899*****99655 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.15        40      40      59 ..       4      23 ..       2      31 .. 0.82
   2 !   18.9   0.1   4.8e-07   0.00013     253     316 ..      31      93 ..      26     124 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.15
   TIGR03594 40 ygeaelkgkefiliDTgGle 59
                ++++e+k++ ++l+DT+G  
  MMETSP1174-20130828|8629_1  4 TTRVEWKDHFINLVDTPGHA 23
                67899***********9974 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.8e-07
   TIGR03594 253 kaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleekl 316
                 ++++ +d ++lv+Dateg+ +q + +++ +++ g  +v+v+NK D   +++   e+++e+ + l
  MMETSP1174-20130828|8629_1  31 RVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRD-TARLSGEVESEIFDLL 93 
                 566777889************************************87.5555556666554444 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.6e-06    0.0018      60     131 ..      16      80 ..      13     102 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.6e-06
   TIGR03918  60 liDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeee 131
                 l+DT+G  D g  G       ++vl+ +d a+lvvda++++ ++ + +++++ ++ + ++vvlnk+d  +++
  MMETSP1174-20130828|8629_1  16 LVDTPGHADFG--G-----EVERVLSMVDGAVLVVDATEGVMSQTKFVVSKAINMGLHFVVVLNKADRDTAR 80 
                 67777777765..2.....35789*******************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.56
# Mc/sec: 1317.58
//
Query:       MMETSP1174-20130828|8634_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.28s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|8638_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.27s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 137.17
//
Query:       MMETSP1174-20130828|8641_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.9   0.0      0.054   11.0   0.0    1.5  1  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
       0.48    8.5   4.8        1.7    6.8   0.1    2.7  3  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.6e-05     0.054      24      45 ..     135     156 ..     134     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.6e-05
   TIGR01411  24 pelgrdlGkaikeFKkalkeee 45 
                  + ++dlG+a  +F+k+lk +e
  MMETSP1174-20130828|8641_1 135 DTYASDLGQAFQAFQKTLKRLE 156
                 5679**************9887 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.28   5.6e+02      62      77 ..      32      47 ..      17      52 .. 0.74
   2 ?    3.1   0.1     0.012        24      28      78 ..      70     119 ..      63     123 .. 0.83
   3 ?    6.8   0.1   0.00081       1.7       8      45 ..     133     170 ..     131     172 .] 0.68

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.28
   TIGR03930 62 rlneaLqeiseelrqa 77
                r+ eaL ++ ++l++a
  MMETSP1174-20130828|8641_1 32 RVLEALSNLHDSLNAA 47
                5566677777776665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.012
   TIGR03930  28 qrlrseidalqstWeGaAaqafdaefaewkpaaerlneaLqeiseelrqaa 78 
                 + lr  ++al ++W+ +A++  d+++ +  +++ +  e L e ++ l ++ 
  MMETSP1174-20130828|8641_1  70 EALRDLMEALSTEWM-DAQKGLDQTYVRPLQSVLDAFEQLRECQQDLTSIR 119
                 678888999999998.89999999999999999999999999999888776 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.00081
   TIGR03930   8 eleqaAkrfqktaqelqqelqrlrseidalqstWeGaA 45 
                 +l++ A++++++ q +q +l+rl+++ ++l +  + aA
  MMETSP1174-20130828|8641_1 133 VLDTYASDLGQAFQAFQKTLKRLERRRQELVARFRAAA 170
                 56777777777777777777777777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 493.52
//
Query:       MMETSP1174-20130828|8640_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-22   77.2   0.3    2.4e-22   76.8   0.2    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.5e-14   51.2   0.4      2e-14   50.8   0.3    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    8.7e-14   48.9   2.0    1.1e-13   48.5   1.4    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-08   31.5   2.7    1.7e-08   31.1   1.9    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.7e-06   23.5   2.3    4.4e-06   23.3   1.6    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.6e-06   22.6   2.2    6.8e-06   22.4   1.5    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      4e-05   20.1   0.3      5e-05   19.8   0.2    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.2   4.1e-25   2.4e-22     135     413 ..      27     312 ..      11     318 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 4.1e-25
   TIGR00958 135 ekeae...eeqsetad...lllrLLkllk.rdlkllllalvllvlsvlgevliPkytgrvidtllqdksvealakaiflltllslaSslla....glrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvleg 413
                 ek a+   ++++   +    ll L ++   rd+ ll+l+++  +ls  ++ +     g+v++   +  +++++  +i l++ll +a  ++a    +++  +f+ + ++ + rire  f++ll+Qd+ Ff++++ G++   l + t ++ +   ++    ++  +  + ++++ l   ++Ltl+ +  +P+ +++    ++++ + +ee  +a   a+ +a E  +++rT  S + E + + r++  l++ ++     + ++ ++  ++ l+  ++  l L++G+ l+ ++
  MMETSP1174-20130828|8640_1  27 EKGAKssnTSDE---TkpvSLLELYQFNTpRDKLLLILGIFAATLSGASQPAQLIIFGNVLNGF-NLGDTDKVVDQINLMALLYVAMGFFAmitmTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLLIQDGFGEKFGSAIQLSTAFIFGIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWKEGVLRGINALITWGMNALGLWFGAWLIAQD 312
                 333331112233...2234788888887624566677777777777777777777788888764.556688999999999999887666551111567788*******************************************************************************************************************************************************99999999999999999******9999***99999775 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.3   3.5e-17     2e-14      13     237 ..      56     282 ..      47     314 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 3.5e-17
   TIGR02203  13 kallvlalvalvlvaatesllaallkplldegfselekeev...llavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasa 237
                 k ll+l + a++l  a+++  + ++ ++l+    +  + +v   +  + ll v +  +  i+  + + +++ v+ k    +R+  f+ ll+   ++f+k++ gs+   l+  +  + +   + +   ++ +   i+ + v ly  Wqltl++  ++P+   ++  +s  +   ++e+ ++ + + ++++e+    r + +  g+     R+  + ++ ++ ++     
  MMETSP1174-20130828|8640_1  56 KLLLILGIFAATLSGASQPAQLIIFGNVLNGFNLG-DTDKVvdqINLMALLYVAMGFFAMITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLLIQDGFGEKFGSAIQLSTAFIFGIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWK 282
                 567999**********************9965555.444440115556666677777788999999*******************************************99999999999***********************************************************************************9999999988877777666655555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   1.4   1.9e-16   1.1e-13      46     270 ..      84     312 ..      42     320 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.9e-16
   TIGR02204  46 deGfskeesellneafalllvvvlvla....latalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlag 270
                  +Gf+  +++++ + + l+ ++ + ++    ++ +++    s++  +    +r+  f+ ll+ + +ff+k + g + + l   t l++   G  +  a++    +i ++ + ++ + +lt+l+  +vP+ ++ +  ++  + ++  es      a++ a+e+  ai+t  + + e+    r+ + +++a +a+ +   +  +l  +  ++  g  +l lW+Ga  + ++
  MMETSP1174-20130828|8640_1  84 LNGFNLGDTDKVVDQINLMALLYVAMGffamITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLLIQDGFGEKFGSAIQLSTAFIFGIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWKEGVLRGINALITWGMNALGLWFGAWLIAQD 312
                 46777777766666666555554444311115556778888999999999************************************************************************************************************************************************************99999999999*****9877554 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   1.9   2.9e-11   1.7e-08     173     387 ..      94     309 ..      76     316 .. 0.94

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.9e-11
   TIGR01846 173 rglstlsvlalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvf.lavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklv 387
                 + ++ ++++al  +a+  + ++  +++t  f+ ++ +    +    ++ ll+  +++fe+++ G + a + e   + +   g+ + +++ l  +++f ++v ++++ +ltl++ + ++i ++++   s+++ +  e+  +   +a s+  es  +i+t+ + + e+ +  r++  l +   a+   +    +   + +li     al lwfGa l+
  MMETSP1174-20130828|8640_1  94 KVVDQINLMALLYVAMGFFAMITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLLIQDGFGEKFGSAIQLSTAFIFgIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWKEGVLRGINALITWGMNALGLWFGAWLI 309
                 5678899999999999********************************************************9999998899**************999********************************999999999999999*************************************999988888888999**************9887 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.6   7.6e-09   4.4e-06     141     328 ..      58     253 ..      33     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 7.6e-09
   TIGR03797 141 vllvgllgtllglvvPlatgilldeviPd...aerslll....qvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlr 328
                 +l++g++++ l+ +   a+ i++++v+     ++ ++++     +al  +a+ + a++ + +q      ++++   +++   ++ LL+  ++fF +++ g +a   m +   i+  ++++  +a+  s+  ++ +++ l+  ++l+l+   ++ +aiav+  ++ + ++ e++  +  ++  +++ + + +i  l 
  MMETSP1174-20130828|8640_1  58 LLILGIFAATLSGASQPAQLIIFGNVLNGfnlGDTDKVVdqinLMALLYVAMGFFAMITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMeSTLLIQDGFGEKFGSAIQLSTAFIFGIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLA 253
                 34455555555555555666777777643112344444310004555555566666777777888888999999****************************988762667789999999999999999999****************************999988888888777777777766666666666554 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.5   1.2e-08   6.8e-06     196     404 ..     101     311 ..      42     323 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.2e-08
   TIGR03796 196 lllgllltall.qvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndk.vaellsgqlattvldlvlvvfy.alvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvle 404
                 l++ l +++ +  ++ +++q+a    +  k + ++   +++ +l+  v+ff++   g ia  +  +   + +  +++  + +++l +++++ + v l + ++l+l+++ +  i ++++  +s + ++a+++ ++ +  + ++a ++  +i tl   + e  ++ r+  +  ++ +a  +   ++ +l+ + +l+t   +al l++g++++ +
  MMETSP1174-20130828|8640_1 101 LMALLYVAMGFfAMITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLlIQDGFGEKFGS-AIQLSTAFIFgIGVALYHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWKEGVLRGINALITWGMNALGLWFGAWLIAQ 311
                 3333444443303444568999999999*******************************987666555055666666655.555555555505566666789*****************************************************************999999999999999999999999999999999999999998865 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   8.6e-08     5e-05     159     406 ..      60     311 ..      30     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.6e-08
   TIGR01193 159 lliviaailvllisiagsyylqkiidvyi...PnklkntlgiislglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskii.dalastils.lfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvir 406
                 +l ++aa l    + a    + ++++ +     +k+ +++ +++l  + +  +  +   i++  +  ++ + +  i   y + l++  ++ff   + G i + + +++ +i d ++    s + l  +++  +g+ l ++  +l ll++ ++P+ + ++ +   +    ++++ +a     s   e+   i t+ slt+e     +    + +  +  +++   e v + + a++   +n + lw+Ga l+ +
  MMETSP1174-20130828|8640_1  60 ILGIFAATLSGASQPAQLIIFGNVLNGFNlgdTDKVVDQINLMALLYVAMGFFAMITMTIQTACFSTVAGKQTFRIREMYFQTLLQQDVTFFEKHNQGSIAASLMESTLLIqDGFGEKFGSaIQLSTAFIFGIGVAL-YHTWQLTLLMFGVVPIAIAVMGSTSSMITTAEEESAKAYNSAGSIASESFGAIRTLASLTGETGVIGRYRVLLDQAKDAGIAWSWKEGVLRGINALITWGMNALGLWFGAWLIAQ 311
                 5555555555555555555555555544312246788999999999999989999999999999999999999***************************9999988876636777666442667777777777666.67789999999***********9999999999999999998899999***************************************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 997.25
//
Query:       MMETSP1174-20130828|8643_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1198.05
//
Query:       MMETSP1174-20130828|8646_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-107  356.8   2.2   5.4e-107  356.4   1.5    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   7.3e-104  346.3   2.1     9e-104  346.0   1.5    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.1e-87  291.0   5.7    5.2e-87  290.6   4.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.7e-85  285.5   4.3    2.1e-85  285.2   3.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.6e-85  283.8   1.5    7.3e-85  283.5   1.1    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.1e-79  264.9   1.1      4e-79  264.5   0.8    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.4e-75  250.3   3.3    9.2e-75  250.0   2.3    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.4e-74  248.5   0.9    6.8e-74  247.5   0.6    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.2e-70  235.8   3.9    2.8e-70  235.4   2.7    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.6e-69  233.0   1.2      2e-69  232.7   0.8    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.3e-64  216.5   0.1    1.6e-64  216.3   0.1    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.6e-56  188.6   0.8    5.3e-56  188.1   0.5    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.3e-41  138.6   2.8    1.1e-38  130.3   0.2    2.1  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    7.4e-40  135.0   0.1    1.7e-39  133.8   0.0    1.5  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      3e-37  126.1   0.0    4.8e-37  125.5   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.3e-36  124.1   0.3      2e-36  123.5   0.2    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-34  117.6   0.1    1.8e-34  117.1   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.9e-34  116.4   0.1    5.6e-34  115.5   0.0    1.5  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.9e-31  107.3   0.1    2.8e-31  106.8   0.1    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.3e-31  106.5   0.3    6.4e-31  105.6   0.2    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.2e-30  103.7   0.1    3.3e-30  103.1   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.5e-30  102.2   0.1    1.1e-29  101.6   0.1    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.1e-29  101.5   0.1    1.8e-29  100.9   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      3e-29   99.8   0.0    4.5e-29   99.2   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.8e-29   99.6   0.2    6.1e-29   98.9   0.1    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.1e-29   98.9   0.3    8.6e-29   98.4   0.2    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      3e-28   96.7   0.0    6.9e-28   95.5   0.0    1.6  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.4e-28   96.6   0.0    5.1e-28   96.0   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.1e-28   96.4   0.1    6.1e-28   95.9   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      1e-27   94.9   0.2    1.6e-27   94.3   0.1    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.5e-27   94.3   0.4    1.5e-27   94.3   0.3    1.8  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.3e-27   92.6   0.2    8.1e-27   92.0   0.1    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      5e-26   89.5   0.1    7.7e-26   88.9   0.1    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.4e-26   89.1   0.3    1.1e-25   88.1   0.2    1.4  1  TIGR00955 3a01204: pigment precursor permease
    6.3e-26   88.0   0.1    6.2e-25   84.7   0.1    2.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    4.1e-25   86.7   0.0    7.4e-25   85.8   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.1e-25   85.9   0.3    5.5e-16   56.1   0.1    1.7  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.9e-24   84.1   0.1    8.8e-24   81.9   0.1    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    6.4e-24   82.4   0.3      1e-23   81.7   0.2    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.3e-23   80.5   0.1    4.1e-23   79.7   0.1    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      2e-22   77.3   0.1    2.8e-22   76.8   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.9e-22   76.3   0.1    1.3e-21   74.9   0.1    1.7  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.9e-21   74.2   0.2    2.9e-21   73.6   0.1    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.1e-20   72.0   0.3    1.9e-20   71.3   0.2    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.2e-20   72.1   0.2    2.1e-20   71.3   0.1    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.5e-20   69.2   0.3      6e-20   69.1   0.2    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    9.3e-20   68.3   0.2    1.5e-19   67.7   0.1    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.1e-19   68.4   0.2    1.8e-19   67.8   0.1    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      3e-19   67.3   0.1    5.6e-19   66.4   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.3e-19   66.4   0.3      6e-18   63.0   0.2    2.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    2.6e-18   64.4   1.7    1.3e-17   62.1   1.1    1.9  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    6.9e-18   60.8   0.1    9.7e-18   60.3   0.1    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    5.9e-17   59.9   0.1      1e-16   59.1   0.1    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    9.7e-15   51.1   0.3    1.9e-09   33.5   0.0    2.1  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      1e-14   51.8   0.0    1.7e-14   51.0   0.0    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.3e-12   43.3   0.8    6.3e-12   43.3   0.6    1.9  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.4e-08   30.5   2.2    6.4e-08   29.1   0.1    2.2  2  TIGR00630 uvra: excinuclease ABC subunit A
    2.5e-05   20.0   0.0    3.9e-05   19.4   0.0    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.4   1.5  7.7e-109  5.4e-107      82     566 ..      38     533 ..      27     539 .. 0.89

  Alignments for each domain:
  == domain 1    score: 356.4 bits;  conditional E-value: 7.7e-109
   TIGR02203  82 vsnkvvrdlRkklfeklltlpsayfdkessgsllsrl...tfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppek...deGtralervrG........kvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLh 566
                 v++   +dl ++ fe++ +l+ + + k++ g+++  +   +   +  +++ +  l   + e + v+ l+   ++  W + l+v+  l + ++++ +++   ++  k +  + ++    + ++l ++  vk f  +++e+ Rf ++ +  +++++ v+ + sl + + q+i    la  l++     + + + +G++va+ + +++l++pl  L  v + + +  +  +++ +ll ++++     + +  + r+ G         v+f++v f+yp+++r  l+++s+++++G+++a+vG  G+Gk+t+ +ll RFy+p++G+++++gvd+ +++ +s+R+ + +v qd vLF+dti +n++Yg+l +++++e+e+a++aa++  ++  l eG +t vGe+g kLsGG +qR+aiaR llkd Pi++LDeatsaLD   eR +q+aL++l ++Rt lviahRLsti++aD+ivvl dG+++e+Gth+ Ll+ n  Ya++ 
  MMETSP1174-20130828|8646_1  38 VAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIdrgIAACDTLMKYGVLYLGPAIGECVAVVILFFT-VFKVWDVGLVVIFSLSLYSYVTITLTLWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIvdsKDAKALKSRMGGgggekrgaLVSFNEVHFNYPNSNR-GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKL-TASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMC 533
                 77788899999999999999999999998887665541115566666666666777789999999988866.5788*************99998877776677777777888899999***************************************************************************************************************999998876541112233333443322222222358**********9876.79**********************************************************************************9.9*********************************************************************************************************************************975 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.0   1.5  1.3e-105    9e-104      88     573 ..      41     534 ..      12     537 .. 0.87

  Alignments for each domain:
  == domain 1    score: 346.0 bits;  conditional E-value: 1.3e-105
   TIGR02204  88 rvvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllav......PlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvf.gavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrge........iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlar 573
                    +dl ++ f+h+ els  ++ k++ gev+  +    +   +++   + + l  ++    a+++l+ t +k+  + l+++        v + + l  +r rk+  ++qd+  +    ++++l + +tv+ +++e++e++rf +ave   + ++  ++a   l  +v  +++ +++++ l + ar    + +  G++ +  ++ v   + l  l+ v++ +  a    + l++ll +ksdi   +  kal  ++ g         ++f+ev+f+yP+      l+g+++++ pG t a+vG +GaGk+t+ +ll rfydP++G+++++Gvd++e+ ++ +re + +vpqd++lf   +l+ni yG++ as ee+eaaa+aa+  +fi+ l+eG++t++Gerg++LsGG kqr+aiar +lkd pi+LLdeatsaLd  +e+ +q+al++l ++rt lviahrL+t+++ad+ivvl +G+++e+Gth++L++ ++ ya++  
  MMETSP1174-20130828|8646_1  41 AAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRGIAACDTLMKYGV-LYLGPAIGECVAVVILFFTVFKVWDVGLVVIfslslySYVTITLTLWRKRFRKA-MNTQDN--KWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSV-DVQASLSLLNIVQQIILnTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKDAKALKSRMGGGggekrgalVSFNEVHFNYPNSN--RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMCI 534
                 5679**************************9888777777777776655.556666666667788888888876544443311111134566666666666664.566665..45567899*************************97655555.566666666666666661568899999***********************99******************************************99877542222333359**********976..99**********************************************************************************************************************************************************************************************************************9865 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   4.0   7.3e-89   5.2e-87      89     571 ..      44     537 ..      19     546 .. 0.89

  Alignments for each domain:
  == domain 1    score: 290.6 bits;  conditional E-value: 7.3e-89
   TIGR01192  89 atllteafgriismplswhsqrgtsnalhtllr...asetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnriasti...slviilvigtvlvkkgelsvgeviafigfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkg....a.....vefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasg 571
                   l +++f  +  + l wh ++   + +  + r   a++tl+   + ++   +   va+++l  + +++ + + lv++    +y  ++  +    k  + a++    +    ++ds+ n   v+ +   ++e  +  +ft+ +   q   +d  a  s ln +   i    l + lv+ +   ++  + +g+ +a   +   l   l+ l +  + i+ a   l+++ +l     +  +  da+ lk+  g    +     v f+++ f+++ns++g++ vsf    g t aivg tgagktt+  ll r ydp+ g ++i+gvdi+ vt++s+r+ i  v qd+ l+n +i +ni+ g+ +a+ ee+ +aa+aa    fi   ++g++t+vgerg +lsgge+qr+aiar +lk+ pi++ldeatsald+ te  +++a++al ++rt ++iahrlst+++ad ++ l +g +ie g+ + l q + ++a++  a  
  MMETSP1174-20130828|8646_1  44 TDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRgiaACDTLMKYGVLYLGPAIGECVAVVILFFTVFKV-WDVGLVVIFSLSLYSYVTITLTLWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYF---TNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIIlntCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKDAKALKSRMGggggEkrgalVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMCIAQA 537
                 5678899************999988887777544449******************************97.56666666555566666555555566777778888888889*********999876...678888899*****************9999998887763325667899******************9999999999*************************999999999999998887654223314444599***********************************************************************************************************************************************************************************************************************************99876655 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   3.0     3e-87   2.1e-85     189     693 ..      21     537 ..      10     538 .. 0.86

  Alignments for each domain:
  == domain 1    score: 285.2 bits;  conditional E-value: 3e-87
   TIGR01846 189 avaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarv.releqirefltgsaltv..vldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksae.aqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteass.......agkaal..pelkGa.iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                  ++  a+   ++ ++  +++    +l+   + h+  l l +  +++ G++v  + r ++    ++    l +  ++    +vv l    f    + lvv++sl +y  + +++  + rkr  +  +++ +  +  +++s+   et+k  + e+  k r+ + +  y + s +v+ +  l + + ++i  +  a  l + a++     + +G++va+n+   ++ +P+  l  ++     + + l+ l ++l + ++  +       ++++     e +Ga ++f++++f y ++s   l+ +s+++++G++  ivG++G+Gk+t+ +ll r+y P +G v+++gvd++ +   ++r  +gvv q+ vlf+ +i  ni+ +k ++s+e++ aaa+ a    fi  l +G++t vge+G +lsGG +qr+a+ar l+++P i++ldeatsald  +e++i++ l+++ + rtv++iahrlst+++ad+i+vl +G+++e G+h+ ll+ +++ya++   q+
  MMETSP1174-20130828|8646_1  21 LLFSKAFKEAQSLVYLGVAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIdRGIAACDTLMKYGVLYLgpAIGECVAVVILFFTVFKVWDVGLVVIFSLSLYSYVTITL-TLWRKRFRKAMNTQDNkWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDskdakalKSRMGGggGEKRGAlVSFNEVHFNY-PNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMCIAQA 537
                 555666666667777777788888999999******************99876657788777777766655433555555555444444555567789999999999887766.578999999887655415789***************************************99999999999999**************************************998887777777777777777766665554332110000034333211345555479********.678889***********************************************************************************************************************************************************************************************************************988875 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.5   1.1     1e-86   7.3e-85     237     710 ..      47     532 ..      12     533 .. 0.86

  Alignments for each domain:
  == domain 1    score: 283.5 bits;  conditional E-value: 1e-86
   TIGR00958 237 redlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvll....rnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsg..tlapknleG........kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                  ed f+ +    ++++ ++k Ge++ R+ +     +++l ++  ++l     ++v + + l+f +   +   lv +++l l   ++ ++  + +   + +     k  + + + l  ++TV+ F++E++E +rf++++e  ++     +    l+ ++++++ ++ l + L++ ++   ++ ++ g+ v+  ++ +ql   ++ L++vy+ ++ a    + + ++l  k  +  s   +   +++ G         v F++V+F YP+   ++ lk+ +f+l+pG+++a+VG  G GK t+  ll ++Y+Pt G+v++ g++++e+  +++++ +++V q+ vlf+ ++ +Ni+YG  ++ +ee+ aaa+aa++  Fi +l +g++t vge+G  lsgG kqr+AiAR L+++P +++LDeAtSALD  +e+ +q+      ++rtvl+iahrLst+++ad+i+vl  g+v e+Gth+ L + +  y+++
  MMETSP1174-20130828|8646_1  47 AEDTFEHVHELSLNWHVKKKLGEVV-RVIDRGIAACDTLMKYGVLYLgpaiGECVAV-VILFFTVFKVWDVGLVVIFSLSLYSYVTITLTLWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKdaKALKSRMGGgggekrgaLVSFNEVHFNYPNS--NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKalNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEM 532
                 5666666666777777778888865.5555555555555554444441000444444.4455666667******************************999999***********************************999998888888888889999999999999*****************************************9998887777777777777766443300223333433333333347***********95..667*****************************************************************************************************************************************************************964445689*************************************999999887 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5   0.8   5.7e-81     4e-79     274     693 ..     102     527 ..      99     530 .. 0.90

  Alignments for each domain:
  == domain 1    score: 264.5 bits;  conditional E-value: 5.7e-81
   TIGR03375 274 fvllfllvialiggplvlvplv.avplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeek..rllsreklkGe........ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlealk 693
                  v+lf +v+ +    lv++  + ++  v ++  l +k+++k+++++ ++ + +   + +sl ++et+k    e+  ++++ q+v+  +k s+++++  +ll  + +++   +    +v+ + +   + + +G  +A+++      +Pl+ l ++   + +a + l++l +l+ ++++  ++k  + l+ + + G         +++++v+f+Yp+++   Lk vs++++pG   ai+G +G+GK+t+ +ll ++y+pt+Gsv+++gvdi+++ +  +r+ ig+vpqd++Lf+ t+ +Ni +g+ +a+ ee+ +aae+a +  f++  ++G ++++gerG +LSgG +q va+aR llkdppi+lLDE tsalD  +e+++ ++L++l +++T+++++Hr s ++ +d+i+vl +G ++  G+++ +l+ ++
  MMETSP1174-20130828|8646_1 102 VVILFFTVFKVWDVGLVVIFSLsLYSYVTITLTLWRKRFRKAMNTQDNKWHDR---ITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKdaKALKSR-MGGGggekrgalVSFNEVHFNYPNSN-RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNS 527
                 57788888776665566555550555555555667889999998887766655...89******************************************************************************************************************999986444300444432.22211223333479********9976.68************************************************************************************************************************************************************************************************************9998765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.0   2.3   1.3e-76   9.2e-75     220     708 ..      37     532 ..      10     534 .. 0.83

  Alignments for each domain:
  == domain 1    score: 250.0 bits;  conditional E-value: 1.3e-76
   TIGR03796 220 rleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsg....qlattvldlvl.vvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseek....ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgc..tciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarL 708
                  + +   +  + + ++h+ +l  +++ +++ ge+++ ++     +++l +     l  ++ ++v+ v++++ v  ++d+ l +i   l++   ++++l+   r+   + ++++  k +     +l + et+k  + e+   +r++ +     + + +++++  ll+++ +++ +   a+ lv+++    +  + iG +va +  ++++ +p++ l ++ +++ +   dl+ l+ +l ++ d   ++ ++ka +s+      ek    v +++v+f y + ++  ++++s+sl pG+  A+vG+ G+Gk ti++l+  +y+p++G+++++g++ +e++++ +++ + +v qd vlf+ t+  n++    t + e+++ Aa+ A+i   i  +++g+++ + e g  lsGG++qR+ iAR L k+P i++lDEatsaLD  tE++i+++l   g   t++++aHRLsti  +d+i+vl  G+v+e+GtH++ll+ +++Ya++
  MMETSP1174-20130828|8646_1  37 GVAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRGIAACDTLMKygvlYLGPAIGECVAvVILFFTVFKVWDVGLVVIFS-LSLYSYVTITLT-LWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSK-DAKALKSRMGggggEKRGALVSFNEVHFNYPNSNRG-LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHqrTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEM 532
                 44444556678889999999999999999999999877766555555544111156777777765145677888899988876644.444444443333.3344455667778889999999**********9988876555555444444455555666667888899999888899999999999999***************************************************99988.333333333357767777789*********999777.59******************************************************************************************************************************************************************998744499****************************************986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.6   9.6e-76   6.8e-74      47     529 .]      14     508 ..       2     508 .. 0.89

  Alignments for each domain:
  == domain 1    score: 247.5 bits;  conditional E-value: 9.6e-76
   TIGR02857  47 laalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegv...dalddYfaryl.pqlvlavivplvilaavltadwisalillltlPlipi.FmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass...........slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                 +a+  ++ll  ++++ ++  +   +a ++  +l e+ +e+v +l+ ++  kkk ge++ ++ +g+   d l +Y   yl p++  +  v +vil++ +++ w  +l+++ +l l     + L+ ++   ++  +  + ++  + + d +   +t+k f  +k e+++ +++ e y++  + v     L  +v  ++     A   V     +    +d  +   v + + +++ Pl  lg+ y a  ++   +++l ++l  ++    ++++++a +s+            +++++v++ y++++  lk+vs++++pg+++a+vG  GaGK+t+ +ll +f +pt+G++ +ng++++e++++s r+ i+ vpQ  +lf++t+++ni  ++  as +e+++a+e+a++  +++ l +g++t++Gerg +LSgG++qR+a+Ar ll+d p++llDE t++LD  te  +++al++l ++rtvl++aHrl+++++ad+ivvl
  MMETSP1174-20130828|8646_1  14 CAVYGALLLFSKAFKEAQSLVYLGVAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRGIaacDTLMKYGVLYLgPAIGEC--VAVVILFFTVFKVWDVGLVVIFSLSLYSYvTITLTLWRKRFRKAMNT-QDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLG-QKSDIVDSKDAKALKSRmgggggekrgaLVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVL 508
                 4555566666777888888899999999*********************************9998333557789999994444444..4556677777788999********99764266777776554444443.3478899************************************99975555556788888777888877777777778899*99999999***********************************.6666777777777777779********99**************************************************************************************************************************************************************************************************************87 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   2.7     4e-72   2.8e-70     179     682 ..      14     533 ..       4     537 .. 0.88

  Alignments for each domain:
  == domain 1    score: 235.4 bits;  conditional E-value: 4e-72
   TIGR03797 179 alallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsg..atlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeek...vd.......pgkLsGa.ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaela 682
                 +++  a+ l + +f+ aqsl+ l +++a+ ++l   +++++ +l+ ++  + + g+++  ++ g+++   l+      l  +++ ++a++ l+  +   + + lv +  + +   vt +l+l++ r ++ + + ++k +  + + +   + ++  + e+   +++++     +k+++++q   +ll+++++++   + a+  +l ++ ++++ +++g+f+a n+ + ++ + +  l +   +++++    + +  +l ++ ++ ++k   +         g+ +Ga ++ ++v F+Y +++++ L+ vs++  pG+  aivG+ G+GK t+ rlL+ F  P+ Gsv+  G d++++ +++vR  +GvV Q++ l+ ++il+ni  g+   +++e  +aa+ a +   i+ +  g  T++ e g +lSGG +QR+ iAr l + P i+l+DEATSALD  t + + ++l++l   R  +viAHRLSTi++ad+i+vl +G+v+e+G++++Ll+ +  +ae+ 
  MMETSP1174-20130828|8646_1  14 CAVYGALLLFSKAFKEAQSLVYLGVAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDrGIAACDTLMKYgvLYLGPAIGECVAVVILFFTVFKVWDVGLVVIFSLSLYSYVTITLTLWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKdakALksrmgggGGEKRGAlVSFNEVHFNY-PNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLtASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRtvLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMC 533
                 4556677788899*******************************************98776448999988886511556789***********99999**********************************************************************************************99999999999999999***************999998887766666666666555555555555555443222200021111111135667765789*******.99***********************************************************************************98887699********************************************************************************76553389*********************************999888876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.7   0.8   2.8e-71     2e-69     209     706 ..      24     533 ..       8     535 .. 0.86

  Alignments for each domain:
  == domain 1    score: 232.7 bits;  conditional E-value: 2.8e-71
   TIGR01193 209 qqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalast.ilsl..fldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdamea.navlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltelenlngd.........ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkd.ktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyasli 706
                  + ++ +++ +   ++q   +d+  +  +h+ el +++   ++ Ge+v       +  d+l    +l l   +   + v++ ++ v++   + l+++ ++ +y+ + i+++  ++k  ++am++ +      i ++l   et+k +t e+ ++++ ++  + y + s+  + +    ++++ ++  +   + l + a    r+ + +G +++ n+ +  + +Pl+ +  +   + +a v  + l +++  +s+  ++k+ ++l++  g          +++n+v+++y  +++ l+ +s+++    ++++vG +G+Gk+t+ +ll +f++++ G +++ng++++++ + ++r++i  +Pq+ ++f+ +il+n+  g k  +s eei++a e a+i   i+ l+ G++t + e + ++sgG kqr+a+ar+ll d  +++lde+ts ld+lte+ i + l  l + +t++ +ahrls  +++d+i+vl +G++ie+G+h++ll+ n  ya+++
  MMETSP1174-20130828|8646_1  24 SKAFKEAQSLVYLGVAQAAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRGIAACDTLMKYgVLYLgpAIGECVAVVILFFTVFKVWDVGLVVIFSLSLYSYVTITLTL-WRKRFRKAMNTqDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKDAKALKSRMGGgggekrgalVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYG-KLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHqRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMC 533
                 333444455555556799999999999*******************997666666777776543134331145556677777888889999999999999999999887764.5555556665515678899************************************999999998888887777777788999999999**********************************************9999999888887766554321122223333789*******************************************************************************************9877.678999****************************************************************************9996528******************************************9987 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.3   0.1   2.3e-66   1.6e-64      83     530 .]      41     496 ..      27     496 .. 0.88

  Alignments for each domain:
  == domain 1    score: 216.3 bits;  conditional E-value: 2.3e-66
   TIGR02868  83 rslgelRvrvYerLaraalallarlrrGdlLarlvaDv...dalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrla.pvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas.......ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                 ++ ++l  +++e++   +l++  + + G+++ ++   +   d+l ++ v  + P++   v +++   ++ +  + ++lv++ +l +   v  +++l+ +r  + a++ + ++ +++++d l + ++ + +   +   ++  +a + + + +   +a   l + ++++++   ++  l++  +a+  + ++ + ++Av v     +f +l+ l ++ +++ ++   ++ ++++l +k++  ++++++a ++           + + +++++++yp++++ lkgvs+ l+pG  +a+vG +GaGK+t+  ll+++ dp +G+v+++gv+++++++  vr+++ v++qd  lF+ t++ N+  ++ +a+ ee++aa e++++   +r L +G +t +ge+g  lSGGe+qR+a+AR Ll+d p++lLDE t  LD  te+++ ++L+a  ++rtv++++hrl
  MMETSP1174-20130828|8646_1  41 AAFTDLAEDTFEHVHELSLNWHVKKKLGEVVRVIDRGIaacDTLMKYGVLYLGPAIGECVAVVI-LFFTVFKVWDVGLVVIFSLSLYSYVTITLTLWRKRFRK-AMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDiGDFVAVNVW-VVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKDAKALKSRMgggggekRGALVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRL 496
                 55677778899*******************9988665522277888888888888876554333.33333446899**********99999999999887765.666778999**************************************9999999999**************************9985677777665.4688999999999999999999999999999999844444444444444446677765778899************************************************************************************************************************************************************************************************96 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.5   7.5e-58   5.3e-56     133     542 ..     104     524 ..      97     525 .. 0.85

  Alignments for each domain:
  == domain 1    score: 188.1 bits;  conditional E-value: 7.5e-58
   TIGR01842 133 llvvfllhpy.lGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilvgraLaPidqaievWkqfsaarkaykrlkelleelp....ar.eealkl......Pepege.levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 +l   +++++ +Gl+++++  +   +++      k+  k  +++  k +  +  +l n e ++ ++  k  + r+++  + + + +   +   + l+ + +++ +    + l l a    ++ +  G  +a  + v +  +P++ +  v+  +++a    k+l++ll + +    ++ ++alk        e +g  ++ ++v++  p+++ + lkg+sf+l +G + ai+G+ g+Gk+++ rll   + p++Gsv ++g+d++++ ++++ ++iG +Pqd  Lf+ t+ +ni+  +  a  e++ +aa++a++  +i  l +G++t +ge+G +LsgG +qR+a+aR l  dP +v+LDe  + LD   e  + kal++l ++ +tv+vi+hr s ++ +d+i+vl dG++ + G+++++l+
  MMETSP1174-20130828|8646_1 104 ILFFTVFKVWdVGLVVIFSLSLYSYVTITLTLWRKRFRKAMNTQDNKWHDRITDSLVNFETVKYFTNEKYEKTRFTQAVEGYQKFSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVNVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSdivdSKdAKALKSrmggggGEKRGAlVSFNEVHFNYPNSN-RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQ 524
                 33333577887799999988877777776666555555555667778889999**********999998888888888888877777777777777777777766666666667777777889999****************************************977542221220222332112222244554368999******998.89********************************************************************************999999*******************************************************************************99876.689*****************************998875 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00098     0.069     566     632 ..     222     288 ..     194     299 .. 0.81
   2 !  130.3   0.2   1.5e-40   1.1e-38    1299    1516 ..     314     532 ..     294     538 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00098
   TIGR00957 566 dennildakkafvslalfni.lrlplnilpmvisslvqasvslkrlriflsqeelepdsierrsikdg 632
                  ++n++d    fv++ ++ + l  pln+l  v  +++ a v lk l ++l q+    ds + +++k+ 
  MMETSP1174-20130828|8646_1 222 YHRNLMDIG-DFVAVNVWVVqLFTPLNFLGTVYNAIITAWVDLKNLSQLLGQKSDIVDSKDAKALKSR 288
                 567888875.59999998873566****************************9988899888888864 PP

  == domain 2    score: 130.3 bits;  conditional E-value: 1.5e-40
   TIGR00957 1299 dlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfs.qysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysm 1516
                  +  l+ ++ ++  g    ivg tgagk+++   lfr  + ++g ++i+g++i+++    +r  + ++pqd vlf  ++  n+     + s ee+  a e a + +f+  l ++ +    e g +ls g++q v +ar+ll+   i++ldeat+a+d+ t+  iq ++ +  ++ tvl iahrl ti    +++vl  gev e ++   llq    +  m
  MMETSP1174-20130828|8646_1  314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKlTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEM 532 
                  5568999999***********************************************************************9754325689***********************************************************************************************************************987666555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.2   5.8e+02     197     244 ..     230     276 ..     225     290 .. 0.74
   2 !  133.8   0.0   2.4e-41   1.7e-39       6     221 ..     314     526 ..     311     542 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 8.2
   TIGR01186 197 gdrivilkaGeivqvGtPdeilrnPaneyveefiekvdlsqvl.dveri 244
                 gd +++  +  +vq+ tP + l    n  +  +++ ++lsq l +  +i
  MMETSP1174-20130828|8646_1 230 GDFVAV--NVWVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLLgQKSDI 276
                 555444..55699999999999999999999999999999987544455 PP

  == domain 2    score: 133.8 bits;  conditional E-value: 2.4e-41
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklv.dl.eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnP 221
                 + g++ v+++++ G    i+G +G+Gk+t+ rll r+ +Pt+G ++i+G+di+e+ +  +    r  i++v q+  lf   til+nis+g   + ++e e    a + l  + +l e+++    +   +lsGG +qrv +ar l  +P+++l+dea sald l+  ++q+ l  l   +q+t++ i+h l  +++ +d+iv+l +Ge++  Gt + +l+  
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSV----REMIGVVPQDTVLFN-DTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLsEGWNTMVGErglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALG--HQRTVLVIAHRLS-TIQHADQIVVLGDGEVIETGTHNSLLQLN 526
                 678999**************************************************9999....788*******99996.69*********99*****9*99999999988757877777665543338********************************************995..89**********6.79********************9999754 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0   6.8e-39   4.8e-37       4     233 ..     303     525 ..     300     535 .. 0.93

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 6.8e-39
   TIGR00972   4 vknlklfy.gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                  +++++ y ++++ lk v++++   + ta++G +G+Gk+t+ r l r+ d +     +G+v+++g di++    + ++r+ +G+v q    f+ +i+ n++yg  +  +++ ++  e+++      +l +  ++ + + +l+LsGG +qr++iar+l  +P ++LlDe tsaLD  + ++i++ ++ L ++ t++++ h ++  ++ +d+++++ +Ge++e+g+ +++++ 
  MMETSP1174-20130828|8646_1 303 FNEVHFNYpNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPT-----RGSVMINGVDITEV--TQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLST-IQHADQIVVLGDGEVIETGTHNSLLQL 525
                 56677778345679************************************98.....8**********976..78899*************************99999999999999999988899**************************************************************************985.6779****************9998874 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.2   2.8e-38     2e-36       4     221 ..     303     524 ..     300     535 .. 0.85

  Alignments for each domain:
  == domain 1    score: 123.5 bits;  conditional E-value: 2.8e-38
   TIGR03864   4 veglsfaygk.rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarl.glae....raeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaa 221
                  ++++f+y + +r l++vs+++a+g+ +a++G  GaGk+t+  ll r y+ ++g++ ++G+d+++ +++ +++ +Gvv q++ l  + ++ +n++y      + + ea+++ +++l  + gl+e       e+  +L+GG+++rv iar ll +P ++LlDeat  LDi + +++++++++l +  + +vL   h +  ++++d++vvl  G+v  +G+ ++l +
  MMETSP1174-20130828|8646_1 303 FNEVHFNYPNsNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREmIGVVPQDTVLF-NDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEgwntMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH--QRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQ 524
                 67899999652689**************************************************999988886268888877665.55899*****8777777777777777777765435555110045566678**********************************************95..55678889**************************99976 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   2.5e-36   1.8e-34       1     209 [.     300     507 ..     300     512 .. 0.88

  Alignments for each domain:
  == domain 1    score: 117.1 bits;  conditional E-value: 2.5e-36
   TIGR02673   1 iielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelv.gledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvle 209
                 ++++++v+++y+++ + Lk vs+++ +g  + ++G  GaGktt+ +ll+    p+rG+v ++g d++++++r++   R  igvv qD  l  + t+l n+      + ++e e   +  ++l  + gl++  +++      +lsgGe+qRvaiaR ++++P+++l De t  lD  ++++i + l++l ++  tv+v +h  + +++ ++ ++ 
  MMETSP1174-20130828|8646_1 300 LVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSV---REMIGVVPQDTVL-FNDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMvgerGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAHRLSTIQHADQ-IVV 507
                 589*******************************************************************9975...999*******865.5679******99888888888999999999988768998887762211468*******************************************999876.689999999998887543.444 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0     8e-36   5.6e-34       2     233 ..     301     522 ..     300     529 .. 0.87

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 8e-36
   TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                 + +++++ +ypn ++ lk v++++ +G  +a++G  GaGk+t+ r + r+ ++++gs++++g ++t++ +   r++r+ ig++ q+  l  + t+l+n+  g+l+a+  ++++    + ++    ++ L++ g + +  +r  +LsGG++qRvaiaR l+++p ++l DE +++LD  + + + ++l  + ++   tv+v  H+++   ++ad+iv l +ge++  g+ ++l
  MMETSP1174-20130828|8646_1 301 VSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQ---RSVREMIGVVPQDTVLF-NDTILHNISYGKLTAS--MEEIEAAAEAAQILGFIRGLSE-GWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ--RTVLVIAHRLSTI-QHADQIVVLGDGEVIETGTHNSL 522
                 67899*************************************************************7766...677888*******8765.679*********9764..4444444445555555555554.89999***************************************************99865..5788888***976.68************988877765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.1     4e-33   2.8e-31       2     214 ..     301     511 ..     300     513 .. 0.88

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 4e-33
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekv.Glkdkakal....PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                 + f++v  +y+ +++  l++v++++  G  + +vG +GaGk+t+ +l+     p++G ++++g d+t++ +r v   r  iG+v qd  l  + t+++n+      + ++  e+   + + l  + Gl++  +++      +lsgGe+qrvaiar ++++P+++l de t+ ld  + r i + l+ + ++  tvlv +h  + +++  + +++l +G
  MMETSP1174-20130828|8646_1 301 VSFNEVHFNYPNSNR-GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSV---REMIGVVPQDTVL-FNDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMvgerGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAHRLSTIQHADQ-IVVLGDG 511
                 789***********9.*******************************************************986...899*******865.5669*******9999999999998888888887658887665441222689*****************************************99999776.689999999999987654.5666666 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.2   9.1e-33   6.4e-31       7     228 ..     315     538 ..     309     547 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 9.1e-33
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelv.elkeaadkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdik 228
                 + ++gv++++  g+  +++G  GAGKtt+ ++L     P+ G+++++G D+++  + +vR+ igvvpq++ + +d t   n+        +++ ea + a+++l ++  l e  +  v+    ++sgG ++r+ +a+ l+++P ++ LDE t+ LD  t r+i + +++l + + t+l+ +h l  ++  ad++ ++  G++i ++t + L  +++++  e+   ++k
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQrSVREMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH-QRTVLVIAHRLSTIQ-HADQIVVLGDGEVIETGTHNSLL-QLNSKYAEMCIAQAK 538
                 5689************************************************976559***********998776.5566666444444566667777777777777347777777776333369*******************************************9976.689********9885.69******************998.666666665544444 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   4.6e-32   3.3e-30      19     220 ..     315     514 ..     302     515 .. 0.88

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 4.6e-32
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekv.glekrin....kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                 + lkgvs+++  g ++aivGs+G+Gk+t+  ll  + +pt G+v+++G +++++++++      + +G + q   l+ d t+l n++   l +++++ ea+ +a+++l  + gl++  n    ++  +lsGGe+qrvaiar+l+++P +vl de t+ ld  t ++i + l+ l +++  ++lv++h l+ ++++d+ + l dg++ 
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVR----EMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNtmvgERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR--TVLVIAHRLSTIQHADQIVVLGDGEVI 514
                 5699************************************************99988764....469*****8777766.9**************************987746776665111156667********************************************998765..568999***************999875 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.1   1.6e-31   1.1e-29      15     222 ..     312     522 ..     299     536 .. 0.87

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 1.6e-31
   TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.krd.yGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.glsgseekyPg....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 ++ + lk +s+s++ g   +++G  G Gktt+ r++  + ++++G+++++g dit+++ +  r+  G+v q  +Lf n t+ +ni+yG  +  +++ e+a+  +++L  + gls+  +   g    +lsGG +qrva+ar l   P ++LLDe  saLD     ++++ l++l ++    t++v   +   ++ aD+ivv+ +g++  +gt + +
  MMETSP1174-20130828|8646_1 312 NSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRsVREmIGVVPQDTVLF-NDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR---TVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSL 522
                 456789*************************************************98764246537**********.66****************************99878887776665533337**********************************************9885...55666667789*******************98765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   2.5e-31   1.8e-29      25     241 ..     315     525 ..     304     537 .. 0.88

  Alignments for each domain:
  == domain 1    score: 100.9 bits;  conditional E-value: 2.5e-31
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelr.sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsf 241
                   l++vs+sl  G t a++G++GaGk+t++rll  +  P++G+v+ +G+d++++    ++++r  + +v qd++  +n     + + g     +++++++++ a+i  +++ +    + ++  +  +lsGG  qr++iar l  +P +++ldea s ld++   si + l++l  +   ++l+i+h l+ +q+ a++++vl +G+++e+ +  +ll +
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVT---QRSVREMIGVVPQDTV-LFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGwNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR--TVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSLLQL 525
                 5699***********************************************9986...5778889*******87.588887777788888889999999999999999998775541566788999***********************************************9886..5799*******986.899***********9877766655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   6.3e-31   4.5e-29      12     205 ..     315     507 ..     304     508 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 6.3e-31
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv.glekklkkki....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205
                 + lk +s+++  G ++aivG+ G+GK+t+  +l ++ ++ +g+v+++g +   +++ + ++ +re +g + q+  L + +t+ +n++ +  +  +++ e   +  ++l  + gl++  ++ +     +lsgGekqRva+ar llk+++++l DE t++LD  ++  + + l+ l ++ +t++++ H  +  ++ad+++ 
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVD---ITEVT-QRSVREMIGVVPQDTVLFN-DTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVgergLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAHRLSTIQHADQIVV 507
                 558999********************************************...55544.456799********99885.79******99888888888888888888887745666666655222278*******************************************999865.8889999***********986 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   8.7e-31   6.1e-29      19     228 ..     315     522 ..     300     535 .. 0.86

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 8.7e-31
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalv.glsdkkdsyps....nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                 + l+ vs+ +  g+   ++g++gagk+t+ r +  +  pt g+v+++g+d+t++++      r  ig++ q   l    t++ n++     ++  + +     +++l ++ gls+  ++        lsgg+kqrvaiar l  +p ++l deatsald  t +si + l  +  +   t+l+i+h +  +++  d++ v+++ge+ie gt + +
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRS---VREMIGVVPQDTVL-FNDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ--RTVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSL 522
                 67999***********************************************998875...5899******9755.578*******98766666666666777888876559***999876422227*******************************************999887..599********9986.79999**********997665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.2   1.2e-30   8.6e-29       1     188 [.     332     522 ..     332     537 .. 0.88

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 1.2e-30
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvq.....leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188
                 ++G++G+Gktt+ rll  + ++  G+++++g+d+tev+ +  +  ++vv q+  Lf   t+ +n+++g     +++ e ++   ++L  ++      +++   +  +lsGG +qrva+ar++ k P i+LlDe+ saLD      +q+ l+al ++   tv++++h +   +  +d+i+vl +G+++  g+ + +
  MMETSP1174-20130828|8646_1 332 IVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRsvREMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAAEAAQILGFIRglsegWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR--TVLVIAH-RLSTIQHADQIVVLGDGEVIETGTHNSL 522
                 68**********************************9865226689**********75.9********99999999999999999999986522234567888999*************************************************95..5555566.6679****************99998766 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   9.7e-30   6.9e-28      17     208 ..     320     514 ..     301     519 .. 0.77

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 9.7e-30
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsa..pyerpvsmlfqennlfahltvrqniglG.lkpglk.l.navqkekvedvar..qvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  ++s++ G   ai+G +GaGk+t+  l+  f  p++G++++n++d t+++    +  + ++ q+  lf+  t+ +ni+ G l  ++  + +a +  ++    r  + G + ++     +lsGG++qrva+arcl+++ pi+llde  sald +  + +   ++ l   +++t+l+++h+ls  ++ a+q+vv+ dG++ 
  MMETSP1174-20130828|8646_1 320 VSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTqrSVREMIGVVPQDTVLFND-TILHNISYGkLTASMEeIeAAAEAAQILGFIRglSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALG--HQRTVLVIAHRLST-IQHADQIVVLGDGEVI 514
                 5678899**************************************9876511456677889999999986.9999****9444444312123344444444331133555566666678********************************998888777776665..5689********97.5679*********986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   7.1e-30   5.1e-28      13     219 ..     314     523 ..     301     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 7.1e-30
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvq.l....eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219
                  + l+ v++++  G  +a++G +G+Gk+t+ r++  + +p+ G ++++G d+t+v+ r     iG v q+  lf+  t+ +ni++G     +++ +  a   ++l +++ l    + +      +lsGG++qrva+ar l  +p ++llde  +ald    + +++ l  l ++    tv+v   +  +++ ad+ivvl +G++++ g+ + + 
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSvrEMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAAEAAQILGFIRgLsegwNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ---RTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLL 523
                 457999************************************************9988531469**********97.999******999999999999999999998853421113444555779***********************************99999999999765...688888888999*****************99988775 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.1   8.7e-30   6.1e-28      18     221 ..     322     524 ..     307     542 .. 0.85

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 8.7e-30
   TIGR02142  18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerris..eekvielL.....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevla 221
                 ++l     ta+ G+ G+Gkt++ rl+     p++g ++++g  +++ ++       +  +g+v q+  LF   ++ +n+ YG  +a+ ee ++    ++++ ++     g + ++  +  kLsGGekqRvai+R lL +P ++l+De  +aLD    + i   L+ l ++ +  +l ++H l+ +++ ad++vvl dG v  +g+ + +l+
  MMETSP1174-20130828|8646_1 322 FSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQ----RSVREMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAaeAAQILGFIrglseGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRT--VLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSLLQ 524
                 555444899*********************************9999888....567899***********97.7889*****999999886544003344443332222346788888899**********************************************88765..7999*******98.9**************99988765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.1   2.3e-29   1.6e-27       3     219 ..     303     522 ..     301     532 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 2.3e-29
   TIGR03410   3 venlevaYgese.vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                  ++++  Y +s+  l++vs++++ g ++a++G  g+Gktt+ + l   ++ ++G+++++g dit++ +++ v++ i+ vpq   +f + t+  n+  g  +++ +       + +i   i  l    ++m   rg +LsGG +q +aiaR L+++P ++lLDe t  +     + i+k++++l +++  ++l++ + l+  +  ad+++vl  Gev+++g++++l
  MMETSP1174-20130828|8646_1 303 FNEVHFNYPNSNrGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEV-TQRSVREMIGVVPQDTVLFND-TILHNISYGKLTASMEeieaaaeAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR--TVLVIAHRLSTIQ-HADQIVVLGDGEVIETGTHNSL 522
                 57888999887526*************************************************987.57889*********9999987.89999999976666551221122333333444444445679999***********************************9999999********9875..7888999998665.5****************98875 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       6.1   4.3e+02     168     184 ..     190     206 ..     189     236 .. 0.76
   2 !   94.3   0.3   2.2e-29   1.5e-27      17     225 ..     317     523 ..     310     531 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 6.1
   TIGR03873 168 ldvsaqlellalvrela 184
                 +dv+a l+ll++v++++
  MMETSP1174-20130828|8646_1 190 VDVQASLSLLNIVQQII 206
                 69***********9985 PP

  == domain 2    score: 94.3 bits;  conditional E-value: 2.2e-29
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsd.edaevvd..ralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                 +++v  +  +G+ t+++G  G+Gk+t+ rll     p++G+v ++g+d++ +++r+    + +v qd+    + ++   +  G++        +++ e a++    r l++   + + +r l  lsGGe+qrv +ar l ++P ++llde t  ld+ +  ++ ++++ l +++ tv+v  h l+  ++ +d++vvl+ G v+ +G+ +++l
  MMETSP1174-20130828|8646_1 317 LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVL-FNDTILHNISYGKLTASM-EEIEAAaEAAQILGfiRGLSEGWNTMVGERGL-KLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNAL-GHQRTVLVIAHRLST-IQHADQIVVLGDGEVIETGTHNSLL 523
                 57999999*************************************************9********9764.667888888999886543.33333303334433114455555566677776.6**********************************************.9999999999***96.7899***************998877 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.1   1.1e-28   8.1e-27      17     230 ..     309     525 ..     296     540 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 1.1e-28
   TIGR03258  17 ay.garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy..krnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklv.qlsdaaa....rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyda 230
                 +y +++  l+ +s+ + +G   a++G +G+Gktt+ r++  f  +  G +++ + d+t +     +  ++++ q+  lf   ++ +n+++G  +  + + + a   a+ l  + +ls+  +    +   +lsGG +qrva+ar l  +p ++llde  sald     s+++ l+al ++    tvl+++h r  ++  ad+i ++ +G++i+ G+ ++l + 
  MMETSP1174-20130828|8646_1 309 NYpNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRsvREMIGVVPQDTVLFND-TILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNtmvgERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ---RTVLVIAH-RLSTIQHADQIVVLGDGEVIETGTHNSLLQL 525
                 553467789*************************************************997542155689999**999986.899*************************98746877544111144679*******************************************999664...58999988.678999*******************999875 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.1   1.1e-27   7.7e-26      20     219 ..     316     513 ..     301     514 .. 0.90

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 1.1e-27
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleav.glee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  l+ ++++++pg    + G++G+Gktt+  l+  +     G++ + g ++++++++    vr  iG++ q   l++  t  +n+  + +l++++++ ea+a+a+++l  + gl e     +  +  +lsgG kqrvaiar+l + P +vl de t+ald  + r++ + l+ l ++   t+l+++h    ++ ad+iv + dG++
  MMETSP1174-20130828|8646_1 316 GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQR---SVREMIGVVPQDTVLFND-TILHNISYG-KLTASMEEIEAAAEAAQILGFIrGLSEgwntMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ--RTVLVIAHRLSTIQHADQIVVLGDGEV 513
                 588999*******************************************9999876...699**********99986.8999**998.69999999***********98767888555466777889*******************************************988765..589*********************986 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.2   1.6e-27   1.1e-25      35     265 ..     311     533 ..     285     541 .. 0.83

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 1.6e-27
   TIGR00955  35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleel.gLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpc 265
                  +  + lk+vs  + +G+  A++Gs GaGKtT+   l fr    +++  +v++nG  +   +++ +r++ + v qd ++++  t+   L   +  +l +++ + e  +   ++l  + gL++  +t++g  g    lSgGe++R+a+a  ll+dP+++++DE Ts LD  +  s+ k+L+ l ++++ v++  H  s    +  d+i++l +G v+ +G+ + ++++ s+   +c
  MMETSP1174-20130828|8646_1 311 PNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTI-GRLLFRFYDPTRG--SVMINGVDItevTQRSVREMIGVVPQDTVLFND-TI---LHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVGERGL--KLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRT-VLVIAHRLST--IQHADQIVVLGDGEVIETGTHNSLLQLNSKYAEMC 533
                 3577789*************************6.6667777777766..8*****865111567889999*****9998876.33...4455666888888888999999999987747**********7775..8**********************************************99875.8888898765..6889******************9999888876665 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   8.8e-27   6.2e-25    1226    1445 ..     309     529 ..     295     538 .. 0.91

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 8.8e-27
   TIGR01271 1226 kyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldp.yeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllneasll 1445
                   y ++ r  l+ +sfs+ +g +  ++g tg+gk+t+   l+r+ + t g + i+gv    vt +  r  +gv+pq   ++  t+ +n+       s eei   ae   +   i  + +  + ++ + g  ls g kq + +ar +l    i+llde ++ ld +t + i+k+l     + tv++  hr+ ++   +q++v+ + +v +  + + ll+ +s++
  MMETSP1174-20130828|8646_1  309 NYPNSNR-GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDpTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYgKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSKY 529 
                  5555544.4899******************************975599***************************************9751446789********************************************************************************************************999998888888888777766 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0     1e-26   7.4e-25      15     225 ..     314     528 ..     301     544 .. 0.87

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 1e-26
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkns.levrkniGylPehnPlyldlyvre..ylefsaalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaekk 225
                 ++ l+ vsf+  +G  +  +G  GaGk+t+ ++l  +  ++ Gsv+++g d+++ +   vr++iG +P+   l+ d  +++  y +++a++ +++  +   ++  +i+    G ++    +  +ls G +qrv +a++ll dP +++lde t+ ld      i++ ++ +++++tv++ +h +  ++   d+++++  G+++   + ++l + ++k
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTqRSVREMIGVVPQDTVLFNDTILHNisYGKLTASMEEIEAAAEAAQILGFIRGLseGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSLLQLNSK 528
                 56799************************************************9761579****************877644499**********99999999999974312444444455557*********************************9999*************************97.799**********99999999888774 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   7.8e-18   5.5e-16     323     498 ..     301     494 ..     279     496 .. 0.77
   2 !   36.2   0.0   7.9e-12   5.6e-10     161     238 ..     437     515 ..     396     545 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 7.8e-18
   TIGR03719 323 ievenlskaf.gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs..........rdalddnktvweeisdGldllklgkvevnsray..vgrfnfkGadqqkkvg....elsGGernrvhlakllkeggnvllldePtndldvetlraleeallefa..Gcavvish 498
                 + +++++ ++ +++  ++ +sf+l +g+   ++G+ GaGk+t+ +l+    +p +G++ i + v+++ v q           +d++  n t+ ++is G+ + ++ ++e  + a   +g      +  + +vg    +lsGGe++rv +a+ l ++  ++llde t  ld+ t r++++al+++    +++vi+h
  MMETSP1174-20130828|8646_1 301 VSFNEVHFNYpNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMI-NGVDITEVTQRsvremigvvpQDTVLFNDTILHNISYGKLTASMEEIEAAAEAAqiLGFIRGLSEGWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGhqRTVLVIAH 494
                 45666666662334567899**************************************98.679999998853422222222345556789999*****999999988877765310333333334456667633346*******************************************98752157888888 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 7.9e-12
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke..ykGtvvavthdryfldnvaeWileldrGegip 238
                 klsGGek+rva++r ll++P ++llde t  ld  +   ++k l+   ++ tv++++h    ++  a+ i+ l  Ge i 
  MMETSP1174-20130828|8646_1 437 KLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNAlgHQRTVLVIAHRLSTIQ-HADQIVVLGDGEVIE 515
                 79*******************************9999999999986336889999999655554.456677777777665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   1.2e-25   8.8e-24      13     235 ..     314     523 ..     301     530 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.2e-25
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmv.Gladkadalp....aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                  + l+g+++++a+G   a++G +G+Gk+ti r+l+ +     Gs+ ++g  ++ +               r vre iG+v q   lf   t+l+n+    + +  ++  ea + a ++l ++ Gl++  +++      +lsGG+kqrvaiar+l   p ++l+de+tsald      + + l  l++  + t+l+++h++    + ad+++ +  G ++e G  + ++
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVT-------------QRSVREMIGVVPQDTVLFN-DTILHNISYGKL-TASMEEIEAAAEAAQILGFIrGLSEGWNTMVgergLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH--QRTVLVIAHRLSTI-QHADQIVVLGDGEVIETGTHNSLL 523
                 46799******************************************876665554.............57899*************6.69*****99865.789**************98769*99999886222268********************************8777778888888875..5699*******976.579***************988876 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.2   1.5e-25     1e-23       3     215 ..     318     524 ..     317     538 .. 0.78

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 1.5e-25
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnP..lltikeqlletlkaleklskqak.elivealeavgLeea.eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                 ++v++sl  g  +a+vG  G+Gk++    +  + d     t+G+++++g ++++++ r+  + i+++ q+ +  fn   l++i+   l    ++e++++ a+ ++i+  ++  gL+e+ ++++ +   +lsGG  qRv ia +ll ++p+++ De t++lD+ ++  + k l+ l ++r  ++l+i+h l+ + + ad+++v+ +G+++e+gt ++l+q
  MMETSP1174-20130828|8646_1 318 KGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYD----PTRGSVMINGVDITEVTQRSvrEMIGVVPQDTV-LFNDtiLHNISYGKLT--ASMEEIEAAAEaAQILGFIR--GLSEGwNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR--TVLVIAHRLSTI-QHADQIVVLGDGEVIETGTHNSLLQ 524
                 689**********************9999999999....69**************77762134666666654.5664123444432222..22223332222023555554..6666527788999*************************************************9876..69********99.67*****************999887 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.1   5.8e-25   4.1e-23       1     183 [.     310     493 ..     310     498 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 5.8e-25
   TIGR01166   1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaav.....disgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                 y++  + lkg+++++  g+++a++G+ GaGk+t+ + l     P+ G v+++G ++       +++r+ +++v qd    lf  ++ +++++g l   ++e e+ +   + l  +     + + +      +lsgGek+rvaia  +   p ++llde t+ ld   ++ + ++l+ l ++ + +vi+
  MMETSP1174-20130828|8646_1 310 YPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDIT--EVTQRSVREMIGVVPQD--TVLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIrglseGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIA 493
                 899999***********************************************7765..5566789999****997..58*************998888877777777777766531111122333344568***********************************************999888886 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0     4e-24   2.8e-22     289     517 ..     310     524 ..     295     535 .. 0.81

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 4e-24
   TIGR03269 289 yisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenltea.iglelpdelakrkavivlkav.GfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                 y   +rG    + +vs+ +  +    +vG +GaGktt+ ++l    +pt+G v++      vd+t+     +  +++ iG++ q+  l+   t+l+n++   ++  + +  a   a  +l  + G++e   + +      +ls Ge+ rva+a+ l+k+p iv+lde t ++d +t++++++++       ++t ++++h +  +++  d++ ++ dG ++++G  +++++
  MMETSP1174-20130828|8646_1 310 YPNSNRG----LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMIN----GVDITEVT---QRSVREMIGVVPQDTVLFN-DTILHNISYGkLTASMEEIEAAAEAAQILGFIrGLSEGWNTMV-GERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNAL--GHQRTVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSLLQ 524
                 5555555....46899999*********************************9985....57888766...445899**********997.6899999865155555554566677777765427777666555.556789***********************************99887765433..3478*********99876.7***************9998875 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   1.8e-23   1.3e-21      22     207 ..     315     494 ..     302     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 1.8e-23
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsla....PatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifh 207
                   lk vs++++ G  +a+ G++GaGk t+ + l++ Y p  g+++++     vd++++++r v   R + ig v q   v+   + l  +    l+  +e+ ea+a+a+++l  ++     W+          sGGekqRv iar l++d Pi+LLde t++Ld  + + + + ++ + ++++ l+ i h
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMING----VDITEVTQRSV---R-EMIGVVPQDT-VLFNDTILHNISYGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMvgerGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLV-IAH 494
                 56899*****************************************98....66677777765...3.5678888876.777778888788888888999999999999***999977778876511113579********************************99999*******999999887.444 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1     4e-23   2.9e-21      22     224 ..     319     524 ..     310     534 .. 0.85

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 4e-23
   TIGR01288  22 dlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieev..ipsllefarlesk.advrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224
                  +sf++a g    ++g  gagk+ti rl++ +  p +g + + g ++     r  r  igvvpq d++  + t+  n+  +g+  + s  eie++    ++l f r  s   ++ v     +lsgg k+r+++ar+l++dp +++lde t+ ld  +   i + l +l  + +t+l+ +h +   +   d+++vl  g  i  g  ++l++
  MMETSP1174-20130828|8646_1 319 GVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITeVTQRSVREMIGVVPQ-DTVLFNDTILHNI-SYGKL-TASMEEIEAAaeAAQILGFIRGLSEgWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNAL-GHQRTVLVIAHRLSTIQ-HADQIVVLGDGEVIETGTHNSLLQ 524
                 589***************************************998876156799**********.6666777898886.79986.4567777776125689****96555156766533337***************************************9999885.6789********99876.58************9999988875 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.2   2.6e-22   1.9e-20       1     196 [.     317     516 ..     317     526 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 2.6e-22
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp...drmv.vfqnysllpwltvreniala.vdavlrdlsk.serreiveehielv.glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaaki 196
                 lk+v++++  g   +++g +g gk+t+  l+  +  pt g+v+++g +ite        m+ v  + ++l   t+ +ni    + a +++++  +e  +i+     l  g ++    r  +lsgg kqrvaiar+l   p ++llde   ald lt  ++q+ l  +   ++ tvl+++h +  ++  +d++v+l +g   + 
  MMETSP1174-20130828|8646_1 317 LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQrsvREMIgVVPQDTVLFNDTILHNISYGkLTASMEEIEAaAEAAQILGFIRGLSeGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNAL--GHQRTVLVIAHRLS-TIQHADQIVVLGDGEVIET 516
                 689999****************************************999886541113342244444555567788888764133344444331344444443333332445566678889****************************************999876..567899*****996.67899******99976555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   2.9e-22   2.1e-20      14     229 ..     313     522 ..     300     534 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 2.9e-22
   TIGR03411  14 gfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleli..gLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 + + l+ +s+s+++g   +i+G+ GaGktt+  ++     p++Gsv+++g d+t++++ ++ r  ig   q + +f + t+l+n++       +++a++ +  +++e+++i   ++ +  g ++ + ++  +Ls G+kq++ i+  l+++p ++llDe ++ +    ++++ + l++l ++r+v+v+ h ++ +++ a+++ vl +G+v+  G+ +++
  MMETSP1174-20130828|8646_1 313 SNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSV-REMIGVVPQDTVLF-NDTILHNISYG-----KLTASMEEIEAAAEAAQILGFIRGLseGWNTMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNSL 522
                 5577999************************************************988765.55689888876666.56899997543.....344555444555555666555554311345566667778*********************************999*************************987.67788***********97764 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.2   8.4e-22     6e-20     228     549 ..     188     515 ..      17     519 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 8.4e-22
   TIGR01194 228 lniieilifilaktvGslllsllvGllltlaayfavidakaisasvlv...llyikGplvqlvsilpilararvaftrlael....serisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd...ekkqasldqattylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                 + +  +  + l + v +++l   +   l+l+a     +   i  +v v   ++ +  pl+ l ++   +  a v ++ l++l    s  +++ + + + s          +k    + +++v+++y++ +      l  + + +a G    ivG  G Gk+t+ +ll  +y p  G ++++G  +++ ++   r++   v  d  lf+d +  +    k  as+++ +   +  ++   ++    ++ t       +ls G+++r+a+    l++ p++llde ++  d    r   +  l  l  + +t+lvi+h     + ad+++ l dG v++
  MMETSP1174-20130828|8646_1 188 FSVDVQASLSLLNIVQQIILNTCLATCLVLSARAYHRNLMDIGDFVAVnvwVVQLFTPLNFLGTVYNAIITAWVDLKNLSQLlgqkSDIVDSKDAKALKSRMG---GGGGEKRGALVSFNEVHFNYPNSNR----GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNisyGKLTASMEEIEAAAEAAQILGFIRGLSEGWNTMVgerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKA-LNALGHQ-RTVLVIAHRLSTIQHADQIVVLGDGEVIE 515
                 5555555555666666776665555444444444444444444444431115666778888888888888888888777776221122233333344444333...45667777788999******87543....47789999******************************************************************987542224557887776666555555555555555555432222228*********************************999998665.5677665.8*************************986 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1   2.1e-21   1.5e-19     275     483 ..     316     515 ..     302     527 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 2.1e-21
   TIGR02633 275 rvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkv..ktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklka 483
                  ++ vsfsl  G    + G  GaG+t + + lf  y+    g+v+++g ++    +++++r+ i +vp+d     ++ + ++ +ni+   l   a++ +i++aae   i   i+ l+   +t+  +    +lsGG++q+  +a++ll +p +++lde t  +d+ +   i k +n+l ++  +++v++  l+ +   +d+++v+g+G++  
  MMETSP1174-20130828|8646_1 316 GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDP-TRGSVMINGVDIT-EVTQRSVREMIGVVPQDT----VLFNDTILHNISYGKLT--ASMEEIEAAAEAAQILGFIRGLSEgwNTMVGERG-LKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR-TVLVIAHRLSTI-QHADQIVVLGDGEVIE 515
                 4678*****************************99986.689*****98774.56789**********985....67777888999888776..56889****************9861134444433.48**********************************************9986.678899999876.679*********9865 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.1   2.6e-21   1.8e-19      39     265 ..     316     534 ..     313     541 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.6e-21
   TIGR03415  39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelv.glaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyvadfv 265
                 g +++s++++ G  + ++G +G+Gk+++ r + ++   +rG+v+++     vd++++ ++++r+     + +v q   l+   t+  n+++G   + + + e   ++++ l ++ gl+e  ++ vge    lsGG +qrv +ar +  + +i+l+de  sald l    +q  l +l +  ++t++ ++h l   ++  ++i ++ +G ++ +gt + + l+ +++y +  +
  MMETSP1174-20130828|8646_1 316 GLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMIN----GVDITEVTQRSVRE----MIGVVPQDTVLF-NDTILHNISYGKLTASMEEIEAAAEAAQILGFIrGLSEGWNTMVGErglkLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH--QRTVLVIAHRLS-TIQHADQIVVLGDGEVIETGTHNSL-LQLNSKYAEMCI 534
                 567899999***********************************96....47887776666654....589998886665.68****************************987589997777777666669*******************************************9987..69*********7.68899***************98765.455666666555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0     8e-21   5.6e-19      16     188 ..     317     497 ..     309     507 .. 0.82

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 8e-21
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekv....gLsgledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 l+g+sf+la+G + +++G+ G+GKtt+ R+l     p+ G+v +n+ +++e++++  +e+  +  +d++  + ++l n+++ +   + e+  ++ ea + +    gLs+  +++v     +Ls G k+R+a+ar ll+  p+ +LDE t alD  + + ++++l+a  ++  +vl+ +h   
  MMETSP1174-20130828|8646_1 317 LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIeAAAEAAQILgfirGLSEGWNTMVGerglKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR-TVLVIAHRLS 497
                 789*****************************************************9***********************98877776664333344333322235666666776533337*******************************************9865555.4555555544 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.2   8.5e-20     6e-18      13     238 ..     314     528 ..     301     532 .. 0.76

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 8.5e-20
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavr..kargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekk 238
                 ++ Lkg++ ++ +G++ ai+G+ G+Gk t+ + l     y  t+G+++++g d++e++     r+ + +  q  +       +++    l+a     +   e+ ++l f + l+e       ++ + eR l    sGGek+r  i + +l +P +++LDe+ s lD+ + + + + +n l ++ +++l+i+h  rl    + d++ vl dG+++++G  + + +l++k
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFR--FYDPTRGSVMINGVDITEVTQR-SVREMIGVVPQDTVLFNDTILHNISYGKLTASMeeIEAAAEAAQILGFIRGLSEGW-----NTMVGERGLK--LSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAH--RLSTIQHADQIVVLGDGEVIETGTHNSLLQLNSK 528
                 5679*****************************986..67889************98654.45666667777776554433333332222222200222333334555555555444.....4456678775..7*******************************************99765.67899999..56666689***************99988888765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   1.1   1.8e-19   1.3e-17       2     201 ..     323     524 ..     322     536 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.8e-19
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagk.....ssrkgrreiGyvpqrhefawdfpidveqtvlsGr.agliGllrrpk.kadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                 s+ +G   +++G  GaGktt+ r ++ +  +++Gsv ++g      ++r+ r  iG vpq   +  d    + + +  G+ +  +  +  +   a+       l++   t + +r + +lsGG++qrv +ar l  +p ++llde  + ld+ ++ ++ + +++l   ++++l+ +h l+   ++ + vvl +g+v+ +g+ + l +
  MMETSP1174-20130828|8646_1 323 SLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVditevTQRSVREMIGVVPQDTVLFND---TILHNISYGKlTASMEEIEAAAeAAQILGFIRGLSEGWNTMVGERGL-KLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH-QRTVLVIAHRLSTIQHADQIVVLGDGEVIETGTHNSLLQ 524
                 66789999*****************************998622221345667789*****8776555...55566666653455555554430444555666677666666777765.6*********************************************975.6789999*****999999999999********9988765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   1.4e-19   9.7e-18     956    1144 ..     327     519 ..     300     530 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.4e-19
   TIGR01257  956 nqitaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswe.eaqlemeamle.dtglhhkrn....eeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtp 1144
                     ta++g  gagktt   +l  +  pt g+v++ g di e +  +vr+ +g++pq  +lf       h + y +l     e ea  e   +l    gl    n    e    lsgg ++++++a +++ d  +v+lde ts +d  + rsi   l      rt+++ +h +   +   d+i ++ +g +  +gt 
  MMETSP1174-20130828|8646_1  327 GTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDItEVTQRSVREMIGVVPQDTVLFNDTI--LHNISYGKLTASMEEiEAAAEAAQILGfIRGLSEGWNtmvgERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQ-HADQIVVLGDGEVIETGTH 519 
                  5679**********************************95678899***************9854..4778899998654433566666666652345655444222278889********************************************************9998765.5799999999998888875 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   1.5e-18     1e-16      16     210 ..     317     521 ..     304     533 .. 0.77

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.5e-18
   TIGR03740  16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewt...rkdl.kkiGsliesPalyenltarenl...kvrtlllglpe.srieevlkiv.dlen....tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkidk 210
                 ++ vs+++   +  +++G  GaGk+t+ +ll  +  +t G+++++g ++t   ++ + + iG++ ++  l+++ t  +n+   k+++ +++++  ++  ++l  + +l++    +   +  ++s G kqr+ ia +ll++P +++lde t  ld l  + +++ ++++ ++  tv++ +h ls +++ ad+i ++ +G++   +  ++
  MMETSP1174-20130828|8646_1 317 LKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVDITevtQRSVrEMIGVVPQDTVLFND-TILHNIsygKLTASMEEIEAaAEAAQILGFIrGLSEgwntMVGERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHQR-TVLVIAHRLSTIQH-ADQIVVLGDGEVIETGTHNS 521
                 78899999999999*******************************9876522244440445666666666655.566666344788888888752467788876634554111044456668999******************************************99885.788889******97.9*********9987666655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   6.9e-06   0.00049     776     844 ..     314     383 ..     261     397 .. 0.72
   2 !   33.5   0.0   2.7e-11   1.9e-09     178     300 ..     407     524 ..     395     541 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.9e-06
   TIGR00956 776 rvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRs....iGYvqqq 844
                  + L+ v+  + PG+ tA++G  GAGktt+   L    +    t g +++ng ++ +  qRs    iG v q+
  MMETSP1174-20130828|8646_1 314 NRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYDP---TRGSVMINGVDITEVTQRSvremIGVVPQD 383
                 4558999999*******************97777655443...568888888887776666522225666665 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 2.7e-11
   TIGR00956 178 eeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkake 300
                  e a++ a++   i GLs   nt vG+  ++ +sGGe++Rv+ia  l+ ++ i ++D+at  LD  t   + kal +  +  + t+lv ++  s    +  d++vvl +G+ i  G+ +   +
  MMETSP1174-20130828|8646_1 407 IEAAAEAAQILGFIRGLSEGWNTMVGERGLK-LSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGH--QRTVLVIAHRLST--IQHADQIVVLGDGEVIETGTHNSLLQ 524
                 556677778888899***********96665.8************************************99999987765..6788888888874..6678************9998877665 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   2.4e-16   1.7e-14     434     650 ..     282     506 ..     257     513 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 2.4e-16
   TIGR00954 434 srkselvagrgkveaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavq.dWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshrksLwkyHeylL 650
                 +++ +   g g  e++   + f+++    P+ +  ++ +sf +  G+   i+G  G GK  + R+l  ++ P++g           + +   ++ +  vPq   + + t+   i Y + +  ++e +   ++  qiL  ++         gw+++  +    LsgGekqR+a+AR +   P  ++LDE+tsA+ +  E  + +++  +g   t+l ++hr s +++ + ++
  MMETSP1174-20130828|8646_1 282 AKALKSRMGGGGGEKRGALVSFNEVHFNYPNSNRGLKGVSFSLAPGTTTAIVGSTGAGKTTIGRLLFRFYdPTRGsvmingvditEVTQRSVREMIGVVPQDTVLFNDTILHNISYGKLTASMEEIEAA-AEAAQILGFIR-----GLSEGWNTMVgERGLKLSGGEKQRVAIARCLLKDPPIVLLDEATSALDILTERSIQKALNALGHqrTVLVIAHRLSTIQHADQIV 506
                 444444555666677888999**********************************************99878998777777776444444455666778888888888888888888777777766543.45566665543.....3456798776155567****************************************999987643389********999877655 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.6   8.8e-14   6.3e-12       5     225 ..     302     522 ..     298     537 .. 0.69

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 8.8e-14
   TIGR02323   5 evselsksygs.kkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekv...eidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvl 225
                 + +e+  +y + ++g++ vsf l pG   +ivG +G+Gk+t+   l     +++G+v  +  +       ++e  +r  +r   G+v q++  +  ++    ni+   l+  +      ++aa+ l  +       + +   +  ++sGG +qr+ iar l+  p +v++ e t  l  +  r +   l +l    + +v++++h l+ ++  a++++v+  G+v+e+G  + l
  MMETSP1174-20130828|8646_1 302 SFNEVHFNYPNsNRGLKgVSFsLAPGTTTAIVGSTGAGKTTIGRLLFRFYDPTRGSVMINGVD-------ITEVTQR-SVREMIGVVPQDTVLFNDTI--LHNISYGKLTASMEEIEAAAEAAQILGFIrglSEGWNTMvgeRGLKLSGGEKQRVAIARCLLKDPPIVLLdEATSALDILTERSIqkALNALG--HQRTVLVIAHrLSTIQ-HADQIVVLGDGEVIETGTHNSL 522
                 556666667541678889***************************************987655.......4555555.46777999999987444433..23444444444444444444444433222100222222223356799***********************99999997777776633444444..4678899999677665.689**************87544 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.46        32     621     649 ..     315     343 ..     308     352 .. 0.86
   2 !   29.1   0.1     9e-10   6.4e-08     822     905 ..     431     510 ..     400     521 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.46
   TIGR00630 621 nnlkdidvsiplglltvitGvsgsGkstL 649
                   lk ++ s+  g+ t+i G  g+Gk t+
  MMETSP1174-20130828|8646_1 315 RGLKGVSFSLAPGTTTAIVGSTGAGKTTI 343
                 569999999999*************9985 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 9e-10
   TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlGP 905
                 +G+    LsGGe qrv +a+ L k      + +lDe t  L +   + + + l+ l ++  tv+vi h l  i++aD i+ lG 
  MMETSP1174-20130828|8646_1 431 VGERGLKLSGGEKQRVAIARCLLK---DPPIVLLDEATSALDILTERSIQKALNALGHQ-RTVLVIAHRLSTIQHADQIVVLGD 510
                 6888899***************97...57899*********999999999999998877.79*******************995 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.5e-07   3.9e-05    1092    1163 ..     438     505 ..     436     507 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.5e-07
   TIGR02168 1092 LSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQFIviTHnkgTMeeadqL 1163
                  LSGGEK  +A+a      ++k  P+++LDE+ ++LD    +   k l+ + ++   +vi H+  T+++adq+
  MMETSP1174-20130828|8646_1  438 LSGGEKQRVAIAR----CLLKDPPIVLLDEATSALDILTERSIQKALNALGHQRTVLVIAHRLSTIQHADQI 505 
                  9*********975....679999*************998888999*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.62u 0.47s 00:00:02.09 Elapsed: 00:00:01.37
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|8650_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 663.61
//
Query:       MMETSP1174-20130828|8651_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 635.20
//
Query:       MMETSP1174-20130828|8653_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|8655_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.8   0.1      0.023   12.8   0.0    2.0  1  TIGR00952 S15_bact: ribosomal protein S15


Domain annotation for each model (and alignments):
>> TIGR00952  S15_bact: ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.7e-06     0.023      20      43 ..      39      62 ..      26     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.7e-06
   TIGR00952 20 GsaevqiallterikkLteHlkan 43
                G  evqia+l++ri+++   lk  
  MMETSP1174-20130828|8655_1 39 GRGEVQIAFLSQRIEQVASQLKDA 62
                7789************99999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 370.21
//
Query:       MMETSP1174-20130828|8657_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1174-20130828|8667_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 257.38
//
Query:       MMETSP1174-20130828|8656_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1505.30
//
Query:       MMETSP1174-20130828|8671_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 359.30
//
Query:       MMETSP1174-20130828|8666_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|8669_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 939.45
//
Query:       MMETSP1174-20130828|8668_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1169.42
//
Query:       MMETSP1174-20130828|8679_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   16.4  19.2    0.00046   15.8  13.3    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  13.3   1.1e-07   0.00046     686     978 ..     246     537 ..     198     542 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-07
   TIGR02168 686 eeieeleekiaelekelkelekeleeleeeleklrkeleel.erklselkkelerlekev.eqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreele.elseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkr 978
                 + ++++ +++++  + +++ ++++ e+  + + l +   ++     ++++ +l+++ +++   ++e  ++ e+ +++    re l+ +le++++e+ e  e  e+le+e+eq++ ++++l++++++l+++++++ +  +   ++ + +++++a ++k+ e+ + + + ++ +i++l++ i+++++++e+   + +e    ++++e ++ +  +++    +  ++++   +k++++ ++e+++     +   +e++ e++++q++++e + + l+ + + + +  ++ e + e+lkr
  MMETSP1174-20130828|8679_1 246 NHLQTVVSRLNDRLESIEDSAQRQMEIIMAKHGLYDVCFQEiISFAHSANPQLSAAVRQIsGVHAELFESMEAVVSRSVTDRERLHVDLEKSRQETTELLEAAETLEKEAEQHQVRTAQLEDEIKRLKEAAEKQFKPTT---TKSRPSTRTAATIAKKNEDGSTTYSVRNLTIKQLKDYIDQINASKEKYDLKCNESHLPRETMEMHMYTYLNQRYgLSNLIIESAAAIIKAMQKYMHEDNDVAVFTKVFRNEIDEEFRKVQTQIKETVADLLRIHLKSKHR-LKSDEVITEHLKR 537
                 555555555555555555554444444444444444433331223344444555544444044566678888888999999999999**************************************99999885444444...45678999999999**************************************999999999999998765555505555667777778889999999999999999999*********************9999999884.4444567776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.74
# Mc/sec: 1223.57
//
Query:       MMETSP1174-20130828|8682_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   15.0   0.0     0.0093   14.1   0.0    1.4  1  TIGR02096 TIGR02096: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.3e-06    0.0093       4      48 ..      15      61 ..      12      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.3e-06
   TIGR02096  4 aqkwiealnsgdmdavlallaeDvlyddeags..rklktkdqlarfl 48
                + + +ea+n++d+ a+ + l eD+ly+d  ++   + +++d++a+ l
  MMETSP1174-20130828|8682_1 15 VLALYEAFNNRDIVAAASYLEEDCLYEDLLLGpsTVCRGRDAFASAL 61
                67789***********************9986114556999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 636.65
//
Query:       MMETSP1174-20130828|8683_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.68
# Mc/sec: 190.22
//
Query:       MMETSP1174-20130828|8685_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1356.73
//
Query:       MMETSP1174-20130828|8689_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 472.96
//
Query:       MMETSP1174-20130828|8686_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|8690_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|8693_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   47.6   0.0    2.6e-13   47.3   0.0    1.0  1  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
    1.5e-07   28.1   0.0    1.8e-07   27.9   0.0    1.0  1  TIGR02713 allophanate_hyd: allophanate hydrolase
      3e-06   24.2   0.0    3.5e-06   24.0   0.0    1.1  1  TIGR02715 amido_AtzE: amidohydrolase, AtzE family


Domain annotation for each model (and alignments):
>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.9e-16   2.6e-13     378     462 ..      17     108 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.9e-16
   TIGR00132 378 klfeevDvivsptaptlafklgekaed.....plemylsDv.ltvpanlaGlpaisvPlgkke.kglpiGlqiigkafddkkllsvakaleq 462
                  l +e+Dviv p+a +++f  + +        + + y   + + vpa+laGlpa+svP+g +   glp+G+q+igk  +d  +l ++ a+++
  MMETSP1174-20130828|8693_1  17 LLSDECDVIVLPSAECFPFDAKLRYPPavdgkATDTYHRWMeVVVPASLAGLPALSVPCGFDAdTGLPMGMQLIGKPCSDVAVLALGLAYNH 108
                 45689**************98877665112333444444333468***************987589******************99988876 PP

>> TIGR02713  allophanate_hyd: allophanate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-10   1.8e-07     323     414 ..      13     111 ..       3     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.3e-10
   TIGR02713 323 rkaeallasvdvllvPtapliptieevaadPvtlnaelGtytnfvn......LldlaavAvPagfrsd.glPfgvtliapafkdaalaelakrlqaasa 414
                 ++++ l +++dv+++P+a ++p  ++++  P     +  ty  ++       L+ l a+ vP gf +d glP+g+ li++  +d a+++l+ ++++a+ 
  MMETSP1174-20130828|8693_1  13 EAIRLLSDECDVIVLPSAECFPFDAKLRYPPAVDGKATDTYHRWMEvvvpasLAGLPALSVPCGFDADtGLPMGMQLIGKPCSDVAVLALGLAYNHATP 111
                 445555678**********************999999999988875222333788999*******99956*********************99988764 PP

>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.6e-09   3.5e-06     351     443 ..      10     105 ..       2     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.6e-09
   TIGR02715 351 vfrdkvrelfervdvllaPatpisapkig.qetleldgvelsvranlGiftqPisfiglPvlavPvkrpek..lPiGvqliaaPwredlllrvaav 443
                 + ++++r l ++ dv++ P++ +       +    +dg              P s++glP l+vP     +  lP+G+qli  P  +  +l+++ +
  MMETSP1174-20130828|8693_1  10 WRAEAIRLLSDECDVIVLPSAECFPFDAKlRYPPAVDGKATDTYHRWMEVVVPASLAGLPALSVPCGFDADtgLPMGMQLIGKPCSDVAVLALGLA 105
                 667789999999*****99999976554414456899999998888888889*************86543334*************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:01.18
# Mc/sec: 133.11
//
Query:       MMETSP1174-20130828|8702_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.22s 00:00:00.33 Elapsed: 00:00:00.51
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|8699_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 641.53
//
Query:       MMETSP1174-20130828|8698_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.0   0.0      0.046   10.5   0.0    1.2  1  TIGR02876 spore_yqfD: sporulation protein YqfD


Domain annotation for each model (and alignments):
>> TIGR02876  spore_yqfD: sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.1e-05     0.046     209     283 ..     112     186 ..      94     203 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
   TIGR02876 209 vkkgdvVkkGdlLvsgelgkeektkevvAegevlArtwYektvevplkeqveerTGkkkskiylkigkkkitlkk 283
                     d+++ G+ L +    +e+  ++v+A+ +  A + Y+    +++ ++ ee+  k +s ++  ig++ +t++k
  MMETSP1174-20130828|8698_1 112 GLSRDTIQHGQDLLHKLEQHEKAWNKVSAKSSLHAAVLYKVCRDLKVPRTLEELSTKADSLTKKDIGRAYLTMQK 186
                 55679******99997777788899**********************************9999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.32s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1136.39
//
Query:       MMETSP1174-20130828|8701_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-121  403.4   0.0   2.6e-121  403.1   0.0    1.1  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    8.7e-66  218.1   1.2    2.3e-65  216.7   0.6    1.9  2  TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit
    3.3e-47  159.0   1.0    4.1e-47  158.7   0.2    1.4  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    1.7e-08   30.2   0.1    2.3e-08   29.8   0.0    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    3.5e-05   20.9   0.0    6.9e-05   19.9   0.0    1.4  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    3.8e-05   19.4   0.1      5e-05   19.0   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    5.5e-05   20.0   0.0    8.1e-05   19.4   0.0    1.2  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    0.00014   19.1   0.0    0.00024   18.4   0.0    1.3  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0036   14.0   0.0     0.0054   13.4   0.0    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
     0.0037   13.1   0.0     0.0054   12.6   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
  ------ inclusion threshold ------
      0.022   11.6   0.0        0.4    7.4   0.0    2.1  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.1   0.0  7.1e-124  2.6e-121       1     359 [.      10     369 ..      10     372 .. 0.97

  Alignments for each domain:
  == domain 1    score: 403.1 bits;  conditional E-value: 7.1e-124
   TIGR01161   1 tvgilGgGQLgrmlalaakklgikvavlea.eaespakqvadeevlasftdpeaieelaekcdviTleiEhvdeeaLekleakgvkvapspealallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalgdkelivEefvkfekElsvivaRskeGevafyPvvenlqkdgilrlvvapaalpeklqkkaeelarklveel.dlvGvlavElFlledgelLvNElApRvHNsGHytldacetSQFeqhlraildlplgstelllp.avmvNllGteesdeeeelleellalpgaklhlYgKaevrpgRKlGHvnlvksdkeel 359
                 tvgilGgGQLgrm+++aa +lgi++++l++  ++spa q+++  v++sf+dpe+++e+a+ cd++T+eiEhv+++ L++lea g+k++psp++l+++qdk+ qk++l+  ++++p+f+ ++ + ++ e+a +++g+p +lK+r+ +YDG+G+ v+++++e+ +a++a+g   l++E++v+f+kEl+v+v+   eG  + +Pvv ++q+++++++v+ap  + ++  ++a ++a+k++ ++ +  G+++vE+Fll d ++L+NE+ApR+HNsGH+t+dac+  QFeqhlra+l+lplg t++ +p avmvN lG+e+++ +++ l+e+la++ga +h+Y+Kae r+gRK+ H++ v++d++el
  MMETSP1174-20130828|8701_1  10 TVGILGGGQLGRMMVEAAVRLGIRTVILDPlGKDSPAGQISELAVEGSFKDPEKVREIAKLCDILTVEIEHVNVDILDELEAAGTKIQPSPSTLRIIQDKFLQKTHLAGYQVPLPDFM-DVPDIKAAENAGQRFGYPYMLKTRREAYDGKGNRVVHNPAEVAEAVSAFGRAGLYAERMVDFTKELAVMVVM-GEGDQRLFPVVDTIQRNNVCHTVIAPSMISRAAMQNALAVASKAISSFtSGRGIFGVEMFLLADDTVLLNEIAPRPHNSGHFTMDACVCDQFEQHLRAVLGLPLGATDMIVPaAVMVNFLGEETMEATKRPLQEALAVDGAGIHWYNKAEARKGRKMAHITYVGDDAAEL 369
                 79***************************84689************************************************************************************.699*******************************************************************96.58*******************************9999999998887773679************************************************************9**********9999999999********************************99987 PP

>> TIGR01162  purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2   7.3e+02       5      29 ..      55      79 ..      52      81 .. 0.81
   2 !  216.7   0.6   6.1e-68   2.3e-65       1     155 [.     394     548 ..     394     549 .. 0.99

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2
   TIGR01162  5 mGsksDlevmkkaaeileelgipye 29
                 Gs  D e ++++a++++ l +++e
  MMETSP1174-20130828|8701_1 55 EGSFKDPEKVREIAKLCDILTVEIE 79
                5888899999999999999988876 PP

  == domain 2    score: 216.7 bits;  conditional E-value: 6.1e-68
   TIGR01162   1 vviimGsksDlevmkkaaeileelgipyelkvvSahrtpeklleyakeaeerglkviiagaGgaahLpgmvaaltelPVigvPvqskalsgldsllSivqmPsGvpvatvaigkakNAallaaqiLalkdeelaeklkelreakkeevlkkskkl 155
                 v+iimGs+sDl++mk aa+++ ++++p+e+++vSahrtp +l +ya++a+ rglkviiagaGgaahLpgmvaa+t+lPVigvPv+s++lsg+dsl+SivqmP+Gvpvatvaig+a NA+lla+++L+  +++l+++++++ +++++ vlkk +kl
  MMETSP1174-20130828|8701_1 394 VGIIMGSDSDLPTMKAAAQVMLDFKVPFEMTIVSAHRTPARLYSYAEDAAGRGLKVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKSSTLSGVDSLYSIVQMPRGVPVATVAIGNAMNAGLLAVRMLGCGNPSLQARMRAWMSEQEDLVLKKADKL 548
                 89****************************************************************************************************************************************************99987 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.2   1.1e-49   4.1e-47       4     364 ..      13     367 ..      10     377 .. 0.90
   2 ?   -3.2   0.0       1.7   6.3e+02     296     363 ..     473     540 ..     471     554 .. 0.70

  Alignments for each domain:
  == domain 1    score: 158.7 bits;  conditional E-value: 1.1e-49
   TIGR01142   4 LlGsgelgkevaieaqrLGveviavDry.adaPamqvahrsvvvdmlDadalravierekPdfivpeieaiatdaLlelekegyevvPnaratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvm.sssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdgvvefcaPiGhrqedgdykesWqPqelsekaleeakeiakr.vvdaLGGlGlfGvelfv.kgdevifsevsprPhdtglvtlisqelsefelhvrailGlpideikqlsPaasavikakeeaekvavegleealsvpetdvrlfGkPeakvgrrlgvaLataesve 364
                 +lG g+lg+ ++ +a rLG++++  D   +d+Pa q+++ +v  + +D +++r++ +    d++  eie +++d L ele++g+++ P+    ++  ++  l+++     ++p   ++ +  ++  e+a ++ G+P + k+   +  GkG+ vv++p+++++a ++    +r+    + +e ++df  e+++++v   ++   f+  +   q +   +    P  +s++a+++a ++a + + +   G+G+fGve+f+ ++d v+++e++prPh++g  t+ +    +fe h+ra+lGlp++ + ++ Paa  v    ee+ +++ + l+eal+v  + +  + k ea+ gr+++      ++ +
  MMETSP1174-20130828|8701_1  13 ILGGGQLGRMMVEAAVRLGIRTVILDPLgKDSPAGQISELAVEGSFKDPEKVREIAKL--CDILTVEIEHVNVDILDELEAAGTKIQPSPSTLRIIQDK-FLQKTHLAGYQVPLPDFMDVPDIKAAENAGQRFGYPYMLKTRReAYDGKGNRVVHNPAEVAEAVSAF---GRA---GLYAERMVDFTKELAVMVVMGEGDQRLFP-VVDTIQRNNVCHTVIAPSMISRAAMQNALAVASKaISSFTSGRGIFGVEMFLlADDTVLLNEIAPRPHNSGHFTMDACVCDQFEQHLRAVLGLPLGATDMIVPAAVMVNFLGEETMEATKRPLQEALAVDGAGIHWYNKAEARKGRKMAHITYVGDDAA 367
                 79************************87479***********************9876..699*****************************9998776.7888888999******************************9762669*************9987532...333...3678999************9999966665.5889999999*********************9762666779*********9726789***************************************************999999999*******************************97665555554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.7
   TIGR01142 296 lGlpideikqlsPaasavikakeeaekvavegleealsvpetdvrlfGkPeakvgrrlgvaLataesv 363
                 +G+p+++ ++ +  +   i    ++  va  ++ +a++    +vr++G  + + + r+   ++++e++
  MMETSP1174-20130828|8701_1 473 IGVPVKSSTLSGVDSLYSIVQMPRGVPVATVAIGNAMNAGLLAVRMLGCGNPSLQARMRAWMSEQEDL 540
                 56666655555555556666666677777788889999999999999888888788887777766664 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   6.2e-11   2.3e-08      90     292 ..      84     274 ..      60     314 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6.2e-11
   TIGR01235  90 efadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaay.GGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpr 292
                 +  d+ e aG   i P++ +l+ + dk   +   +  +vP+    d  v +++++++ +++ GyP +lk+      G+G rvv + +eva        ea +afG+  +y e++++ +k + v ++  + G+   lf    ++qr +     +aP+     +++++la a+ +++  ++ ++   ve ++ +d+   + e+ pr
  MMETSP1174-20130828|8701_1  84 DILDELEAAGT-KIQPSPSTLRIIQDKFLQKTHLAGYQVPLPDFMD--VPDIKAAENAGQRFGYPYMLKTRReAYDGKGNRVVHNPAEVA--------EAVSAFGRAGLYAERMVDFTKELAVMVVMGE-GD-QRLFPVVDTIQRNNVCHTVIAPSMISRAAMQNALAVASKAISSFTSGRGIFGVEMFLLADDTVLLNEIAPR 274
                 55666677774.599**************99999999999755555..44788999*************976145799**********97........5778********************9987654.43.479999999******9999****99999999999999999**99999999888865555557888888888 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07   6.9e-05      68     129 ..      89     150 ..      63     173 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.9e-07
   TIGR02144  68 leelGvkvinsseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKP 129
                 le++G+k+  s +++   +dK++ +++La  +vP P+ + + d +aa ++ +++GyP +lK 
  MMETSP1174-20130828|8701_1  89 LEAAGTKIQPSPSTLRIIQDKFLQKTHLAGYQVPLPDFMDVPDIKAAENAGQRFGYPYMLKT 150
                 79999999999***********************************************9996 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-07     5e-05      88     268 ..      83     252 ..      44     273 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-07
   TIGR02712  88 aafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlksta.GGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevq.ilGdgkGkvvalgerdCslqrrnqkvveetPaPnl..peevrekllkaaeklaeavnyrs 268
                 ++  +++eaag   + P+p +lr +  k   +   +  +vPl +    + ++++a +a+++ gyP mlk+      G G + v++ +e++ea         s f+ ag++ e++v+ ++ + v  ++G+g  +   + +   ++qr n  v     aP +   ++++++l+ a++++++  + r+
  MMETSP1174-20130828|8701_1  83 VDILDELEAAGTK-IQPSPSTLRIIQDKFLQKTHLAGYQVPLPDF-MDVPDIKAAENAGQRFGYPYMLKTRReAYDGKGNRVVHNPAEVAEAV--------SAFGRAGLYAERMVDFTKELAVMvVMGEGDQRLFPVVD---TIQRNN--VCHTVIAPSMisRAAMQNALAVASKAISSFTSGRG 252
                 5566677777754.8899999999999999999888999998655.55789******************97515689************9864........67******************997358998888776655...588877..55555555541144566777777777766655555 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-07   8.1e-05     101     289 ..      94     271 ..      80     310 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-07
   TIGR00514 101 tfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikata.GGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflem 289
                 t i ps+ ++r++ dk   k  +   +vp+ p     v d++ a +  ++ Gyp ++k+      G+G rvv++++e+        aea +af+ +g+y e+ ++  + + + v+  + G+   +   d +iqr +      aps +  + +++++  a+ +++   + +g+  ve++l  ++   + e+
  MMETSP1174-20130828|8701_1  94 TKIQPSPSTLRIIQDKFLQKTHLAGYQVPL-PDFMD-VPDIKAAENAGQRFGYPYMLKTRReAYDGKGNRVVHNPAEV--------AEAVSAFGRAGLYAERMVDFTKELAVMVVMGE-GDQRLFPVVD-TIQRNNVCHTVIAPSMISRAAMQNALAVASKAISSFTSGRGIFGVEMFLLADDTVLLNEI 271
                 5589**************999999999996.54444.57889999999**********9751568**********997........58889*******************99998754.6665566666.799998888888888888888888887777777777777777777765555555555555 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.4e-07   0.00024      59     130 ..      80     151 ..      48     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.4e-07
   TIGR00768  59 drglavlraleslGveviNssqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpv 130
                 + ++++l  le++G+++  s++ +   +dK+l    La + +plp+ + + + ++a+++ +++g+P  lK+ 
  MMETSP1174-20130828|8701_1  80 HVNVDILDELEAAGTKIQPSPSTLRIIQDKFLQKTHLAGYQVPLPDFMDVPDIKAAENAGQRFGYPYMLKTR 151
                 56889999**************************************************************85 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-05    0.0054      45     171 ..      53     175 ..      20     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-05
   TIGR00877  45 eveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkavee 171
                  ve + +d e+v e+ak ++i  + i   ++    + d+le+aG k+  p+ +  ++  +K   k+ l+ +++p + +  + +++ a++  +++g p ++        GKg  vv++  e  +av++
  MMETSP1174-20130828|8701_1  53 AVEGSFKDPEKVREIAKLCDILTVEI---EHVNVDILDELEAAGTKI-QPSPSTLRIIQDKFLQKTHLAGYQVPLPDFMDVPDIKAAENAGQRFGYPYMLKTRREAYDGKGNRVVHNPAEVAEAVSA 175
                 45556679999999999988854433...678889*********997.699**********************************************66666666779*******888887777765 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.4e-05    0.0054     209     283 ..     104     181 ..      89     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.4e-05
   TIGR02068 209 eiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPl.dGnhGrG..vtiniesreeiesayeaake 283
                  i +Dk l k+ L+   vP P    v  +++ae+a +  GyP ++k + +  +G+G  v+ n     e++sa+  a  
  MMETSP1174-20130828|8701_1 104 RIIQDKFLQKTHLAGYQVPLPDFMDVPDIKAAENAGQRFGYPYMLKTRrEAYDGKGnrVVHNPAEVAEAVSAFGRAGL 181
                 6899******************************************75244556663366677778888899887765 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0011       0.4     105     287 ..     107     275 ..      96     289 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0011
   TIGR01205 105 mdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareG.SSvGvskvkseeeleealeeafeydeevlveeaik.grelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeek.ikelalkaykalgcrglaRvDfflekegeiylnEiNtiP 287
                  dK l K  l+   +p +d++ +   + k +e   ++ +++g+p++ K++re     G  +v++  e++ea+++ f     +  e++++  +el+v v+  e     + +v  ++           ++  + ++ p  +s +  ++ +   ++ + +  + rg+  v++fl ++ +++lnEi + P
  MMETSP1174-20130828|8701_1 107 QDKFLQKTHLAGYQVPLPDFMDV--PDIKAAE---NAGQRFGYPYMLKTRREAyDGKGNRVVHNPAEVAEAVSA-FGR-AGLYAERMVDfTKELAVMVVMGEGDQRLFPVVDTIQ----------RNNVCHTVIAPSMISRAAMQNaLAVASKAISSFTSGRGIFGVEMFLLADDTVLLNEIAPRP 275
                 58999999999999999999988..5555444...456789999999998875234577777777777776543.332.234555554424556655554344344444444444..........1112244444444554444430333334444455667777777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.65
# Mc/sec: 1171.66
//
Query:       MMETSP1174-20130828|8711_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|8712_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|8714_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.80
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|8715_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|8716_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-09   31.9   8.1    3.5e-08   29.8   5.6    1.7  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   5.6   8.4e-12   3.5e-08     502     645 ..       1     139 [.       1     155 [. 0.78

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 8.4e-12
   TIGR00870 502 mlgrmilrDllrFlfiylvvLlaFavalvqlykyydekklneesslkpirceieenaystlletlleLFwaiiGlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeeadeeWkfqraklvlsleeegg 645
                 m+  m l D++  +   lv++ +F+ al+q       +++++  s+ +i     +++     e++  L  ++  +v ++k+ ++++  +g+ l +a+ ++ +++L+N LI mm+ ty++++   +  W +qra ++ s+ +e+g
  MMETSP1174-20130828|8716_1   1 MISEMRL-DIFHIFRFALVFICGFSAALHQFQI---GNEMGHSASPFGIYHILFQATLGDSSEAMAMLGESSEAMVFFPKTIDAHFW-IGYSLMVAFQLLVPLVLINTLIVMMSATYERVEGAKEGHWMLQRASIMQSIIDEMG 139
                 7777888.8888888888889999999887533...334444444444554555577777778888888888888777888888874.6788889****************************************999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|8720_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|8713_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.21s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 914.27
//
Query:       MMETSP1174-20130828|8723_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 267.75
//
Query:       MMETSP1174-20130828|8726_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.26s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 260.50
//
Query:       MMETSP1174-20130828|8725_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-12   43.6   0.3    7.4e-12   43.4   0.2    1.1  1  TIGR01385 TFSII: transcription elongation factor S-II
  ------ inclusion threshold ------
       0.06   11.9   0.9       0.55    8.8   0.0    2.2  2  TIGR01384 TFS_arch: transcription factor S


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.2   3.6e-15   7.4e-12     156     266 ..      46     158 ..       3     163 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.6e-15
   TIGR01385 156 desasaidpealaveveellfeklgktekaykarvRsiifNl.rdkn..NpdLrkkvltgeitpeklatlsaeelAsdelkqerekikkealfe.aqrakaekavtDlFkCGkCk 266
                   s++ + ++ la e+e  +fe+ +  ekay+ +vRs++fNl rd+      Lr+kv+ g+it  +la ++a+ l    +  +r+ i++++l + a+ + a + +tD   C +C+
  MMETSP1174-20130828|8725_1  46 GTSTNEAHCHSLAQEIERAAFESQRGDEKAYRSKVRSLVFNLnRDSGgvGNTLRRKVIAGHITGRQLALMDADSLD-LTIGAKRKAIRQRSLDQvADWSAALGNNTDV-ECPRCG 158
                 56889999**********************************5576522468********************9885.4677888899999996625566667777774.899997 PP

>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.056   1.2e+02      35      59 ..      11      35 ..       2      79 .. 0.58
   2 ?    8.8   0.0   0.00027      0.55      58      73 ..     148     163 ..     121     164 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.056
   TIGR01384 35 kvtekvkekkketilveeeeletlp 59
                k++++ +e+++ t+++ + e ++ +
  MMETSP1174-20130828|8725_1 11 KREDQREEEEEATVMIDGVEASSTE 35
                3444444444445555443333332 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00027
   TIGR01384  58 lptkiecpkcknkeyy 73 
                  +t++ecp+c+++  y
  MMETSP1174-20130828|8725_1 148 NNTDVECPRCGYDRTY 163
                 4599*******99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.64
# Mc/sec: 338.22
//
Query:       MMETSP1174-20130828|8729_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-12   44.5   1.7    2.1e-12   44.2   1.2    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
  ------ inclusion threshold ------
      0.026   11.1   0.1      0.028   11.0   0.1    1.1  1  TIGR00898 2A0119: cation transport protein
      0.032   10.9   0.0      0.035   10.8   0.0    1.1  1  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   1.2   1.5e-15   2.1e-12     447     510 .]      19      81 ..      15      81 .. 0.96

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 1.5e-15
   TIGR00879 447 kgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 +g + +v++nw+anf ++ +f+ + + ++g  ++F++f+++ +++  + ++flpet+g++lee+
  MMETSP1174-20130828|8729_1  19 LGNSASVTTNWVANFAVSEFFLPLCN-ALGESMTFWLFALFALVGGGFLFIFLPETRGVSLEEM 81 
                 577899********************.8**********************************96 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1     2e-05     0.028     462     505 ..      36      80 ..      16      81 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2e-05
   TIGR00898 462 sPflvyvlgevslflplvifgvlallagl.lsllLPetkgvaLpe 505
                 s f++ + +++  ++++ +f++ al+ g  l ++LPet+gv L+e
  MMETSP1174-20130828|8729_1  36 SEFFLPLCNALGESMTFWLFALFALVGGGfLFIFLPETRGVSLEE 80 
                 666666677888889999999999987651678*********987 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.6e-05     0.035     469     500 ..      50      82 ..      25      84 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.6e-05
   TIGR00887 469 nvleifalvmllGilft.lLiPetkgksleels 500
                   +++fal+ l+G  f  + +Pet+g slee++
  MMETSP1174-20130828|8729_1  50 MTFWLFALFALVGGGFLfIFLPETRGVSLEEMD 82 
                 46799*****99876651579**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 485.15
//
Query:       MMETSP1174-20130828|8731_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   13.6   0.0     0.0058   13.4   0.0    1.1  1  TIGR04142 PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family


Domain annotation for each model (and alignments):
>> TIGR04142  PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-06    0.0058     271     304 ..      33      66 ..      19      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-06
   TIGR04142 271 lyrekeedsfeewlkesrkeisitifdeiyiken 304
                 ++re  ed f++wl++ r ++++ + de  +++ 
  MMETSP1174-20130828|8731_1  33 MFRENAEDYFHQWLVSERLDMNVDVNDEHTMHQY 66 
                 8*************************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 278.02
//
Query:       MMETSP1174-20130828|8739_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|8735_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-86  286.1   9.2    9.2e-86  285.8   6.4    1.0  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    1.8e-21   74.6   7.8    6.1e-21   72.8   5.4    1.7  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family
    5.7e-10   37.1   2.4    5.4e-06   24.1   0.0    2.9  2  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.8   6.4   6.7e-89   9.2e-86      33     302 ..      60     339 ..      46     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 285.8 bits;  conditional E-value: 6.7e-89
   TIGR03718  33 vkeallwslvwvalallFavlvyll.....lgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlle....eeeeedleenllvrllkkv.....lpvtdklegekffvre.kgkrlatplllvlvlveltdliFAvDSiPaifavtqdpfivytsnifailGLralYfllagllerlvyLkyglaviLvfigvKlllseaelveipiavsLavivavlavsvvasllktk 302
                  k a++w++    ++llF+++v +       g++  ++f+tg+++Ek+LsvDNlfvf++ f++f+ p+e+q+rvL wGi+ga++lR+ +i +G++l+e+ + vl++f++fl y+++k + e    ee++ dl+e ++++++  +     +++tdk++ e+f+    +g++ atp+l+vlv+vel+d++FAvDSiPai+++tqdp+i+y sni+ailGLr+lY lla++++ l yLk ++++iL+f+++K++l ++++ +++  +sL+v++++l  +vvasl+k++
  MMETSP1174-20130828|8735_1  60 YKTAIVWTF----ITLLFSGAVGVGvvlplRGKKGMMDFFTGFVIEKTLSVDNLFVFVMFFNYFKTPEEYQRRVLNWGIIGAIILRGFMIGAGVKLVEHCKPVLLVFALFLFYAAYKAMAEyihgEEDSGDLAELPVMKFTGAIckkfgVEMTDKYDAENFWSVGgDGVKRATPMLVVLVCVELSDVMFAVDSIPAIMGITQDPLIIYLSNICAILGLRQLYVLLAKAVSDLEYLKPAVSLILFFVAFKMVLDHFDV-HVSSETSLTVVMGILLSGVVASLMKKQ 339
                 555555555....55555554444333445899999*********************************************************************************99988877778889999999998754422224789*********976549**************************************************************************************9997.************************976 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   5.4   4.5e-24   6.1e-21       7     206 ..      99     332 ..      94     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 4.5e-24
   TIGR03716   7 vlEglLsaDnAvvlAvlvk..hLPekqrkkaLfYgliGAyvfRfialllasflikl.weikalgalYLlylalkhllkkkkekeeeekekkkek...................................keFWktvikveladlaFsvDsilaavalsekllvvllGgllGillmRfvaelfvkllekipeLetaAfllvglvgvkllletlaheeiallkielpesalwklifwlvl 206
                 v+E  Ls+Dn  v+ +  +  + Pe+ +++ L +g+iGA ++R +++++++ l++    + ++ al+L+y a+k +++  + +e++   ++                                      +    +++ vel d++F+vDsi a ++++++ l+++l  +  il +R +  l+ k +  +  L  a  l++ +v++k++l    h ++++ +++ + + ++ +++ +v+
  MMETSP1174-20130828|8735_1  99 VIEKTLSVDNLFVFVMFFNyfKTPEEYQRRVLNWGIIGAIILRGFMIGAGVKLVEHcKPVLLVFALFLFYAAYKAMAEYIHGEEDSGDLAELPVmkftgaickkfgvemtdkydaenfwsvggdgvkraTPMLVVLVCVELSDVMFAVDSIPAIMGITQDPLIIYLSNICAILGLRQLYVLLAKAVSDLEYLKPAVSLILFFVAFKMVL---DHFDVHVSSETSLTV-VMGILLSGVV 332
                 89********9998887763367*******************************8615799999************9998888877766654446799*****************88888888888887777788999*********************************************************************99...888888777665554.4444444444 PP

>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.9e-09   5.4e-06       7     127 ..      99     261 ..      94     268 .. 0.82
   2 !   10.5   0.8   5.8e-05      0.08      41     109 ..     268     332 ..     261     338 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.9e-09
   TIGR03717   7 lidlvLagDnavvialaar..kLpkkqrkkailvGvaaAvvlRillalvavllLe.ipllkliggllLlwiavkllleeeeeeeeeekase.......................................tllkaiktiviADvvmslDnvlavagaakgell 127
                 +i+  L+ Dn  v  +  +  k p++ +++++ +G+++A++lR +++ + v+l+e  + + l+ +l+L++ a+k ++e  + ee++ + +e                                        +l ++  + + Dv++++D + a+ g++++ l+
  MMETSP1174-20130828|8735_1  99 VIEKTLSVDNLFVFVMFFNyfKTPEEYQRRVLNWGIIGAIILRGFMIGAGVKLVEhCKPVLLVFALFLFYAAYKAMAEYIHGEEDSGDLAElpvmkftgaickkfgvemtdkydaenfwsvggdgvkratPMLVVLVCVELSDVMFAVDSIPAIMGITQDPLI 261
                 57778999**999888766226689999******************999999986378899***************998887777655555788888888888888888888888888888888888877677777777788888888888888888887665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.8e-05
   TIGR03717  41 aaAvvlRillalvavllLeipllkliggllLlwiavkllleeeeeeeeeekasetllkaiktiviADvv 109
                  a + lR l +l+a  + ++++lk + +l+L+++a+k++l++ + + ++e    t l++++ i++  vv
  MMETSP1174-20130828|8735_1 268 CAILGLRQLYVLLAKAVSDLEYLKPAVSLILFFVAFKMVLDHFDVHVSSE----TSLTVVMGILLSGVV 332
                 344569**********************************9988877653....233344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 769.56
//
Query:       MMETSP1174-20130828|8740_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|8736_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.77
# Mc/sec: 1407.31
//
Query:       MMETSP1174-20130828|8737_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.69
# Mc/sec: 1287.37
//
Query:       MMETSP1174-20130828|8743_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.22s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1257.37
//
Query:       MMETSP1174-20130828|8746_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|8751_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1174-20130828|8752_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.26s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 327.97
//
Query:       MMETSP1174-20130828|8747_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-13   46.5   0.5    9.9e-06   22.4   0.0    3.1  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      5e-13   46.3   0.1    4.3e-06   23.4   0.0    3.1  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.8e-10   38.0   0.5    0.00011   18.9   0.0    3.1  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    2.7e-08   31.0   2.6    0.00012   19.0   0.0    3.1  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      5e-05   20.9   1.6      0.019   12.5   0.1    3.2  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    9.2e-05   19.5   0.1    0.00014   18.9   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0003   18.0   0.6     0.0005   17.3   0.4    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0023   14.8   0.4        0.2    8.5   0.0    2.7  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0086   12.6   0.5      0.012   12.1   0.3    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
  ------ inclusion threshold ------
      0.014   12.3   0.1      0.023   11.6   0.1    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.017   11.9   0.0      0.025   11.4   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.021   11.2   0.0      0.031   10.6   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.027   11.5   0.0      0.038   11.0   0.0    1.2  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.5e-06     0.002       2      34 ..      24      55 ..      23      83 .. 0.85
   2 !    6.1   0.0     0.003      0.94     149     168 ..     197     216 ..     125     227 .. 0.88
   3 !   22.4   0.0   3.1e-08   9.9e-06     276     312 ..     427     463 ..     420     476 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.5e-06
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
                +vIvGgG+ G alAlaL++++ +   l+e+ a+
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRH-IPAVLFEKDAT 55
                8*****************766.99999888765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.003
   TIGR01988 149 getleakLlvgADGanSkvr 168
                 + +++a+L+vgADG  S vr
  MMETSP1174-20130828|8747_1 197 EVVVQAALVVGADGIWSSVR 216
                 44699**************9 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 3.1e-08
   TIGR01988 276 vaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevl 312
                 +++rv liGdA h + P  GQG N  l D+ +La+ +
  MMETSP1174-20130828|8747_1 427 ANTRVTLIGDAIHPMSPFKGQGANQALVDAVSLAREI 463
                 678*******************************977 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.9e-06   0.00091       3      42 ..      24      62 ..      23      92 .. 0.75
   2 ?    3.1   0.0      0.02       6.3     146     172 ..     200     226 ..     194     234 .. 0.79
   3 !   23.4   0.0   1.4e-08   4.3e-06     297     332 ..     426     461 ..     409     474 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.9e-06
   TIGR03219  3 vaiiGGGiaGvalalelsksshlnvklfeaapafgevGaG 42
                v i+GGGi G alal l ++ h+   lfe   +f     G
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALAL-RQRHIPAVLFEKDATFDCRAQG 62
                789************98.789********99998754333 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.02
   TIGR03219 146 yradlligadGiksalrdyvlegagqa 172
                  +a l++gadGi s++r   l   g +
  MMETSP1174-20130828|8747_1 200 VQAALVVGADGIWSSVRGRKLLDLGAS 226
                 57899************8877655555 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1.4e-08
   TIGR03219 297 yvhGrvaliGdaahamlphqGaGaGqGledayllar 332
                   + rv+liGda h m p +G Ga q l da  lar
  MMETSP1174-20130828|8747_1 426 TANTRVTLIGDAIHPMSPFKGQGANQALVDAVSLAR 461
                 5678****************************9997 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.4e-05    0.0077       2      37 ..      24      58 ..      23      91 .. 0.77
   2 ?    2.7   0.0     0.031       9.9     145     166 ..     196     217 ..     191     228 .. 0.83
   3 !   18.9   0.0   3.6e-07   0.00011     274     310 ..     427     463 ..     421     468 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.4e-05
   TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaksaeaa 37
                v+ivGgg+ G +lAlaL +   +   l+e+ ++   
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRH-IPAVLFEKDATFDC 58
                89******************9.9999**99877554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.031
   TIGR01984 145 neqkleakLlvaAdGanskvre 166
                 ne  ++a+L+v AdG  s vr 
  MMETSP1174-20130828|8747_1 196 NEVVVQAALVVGADGIWSSVRG 217
                 55679***********999984 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 3.6e-07
   TIGR01984 274 vkervvlignaAqtlhPiAgQGfNlGlrDvltLaevl 310
                  + rv lig+a + + P  gQG N+ l D+++La+ +
  MMETSP1174-20130828|8747_1 427 ANTRVTLIGDAIHPMSPFKGQGANQALVDAVSLAREI 463
                 578******************************9987 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.3    0.0029      0.93       3      22 ..      24      43 ..      23      49 .. 0.91
   2 ?    4.1   0.0     0.013         4     169     188 ..     199     218 ..     170     229 .. 0.86
   3 !   19.0   0.0   3.8e-07   0.00012     332     366 ..     428     462 ..     422     465 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0029
   TIGR01989  3 vvivGgGlvGlalAaalkkn 22
                vvivGgG+ G alA al++ 
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQR 43
                8***************9875 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.013
   TIGR01989 169 tlktklliGADGanSkvRka 188
                 + ++ l++GADG  S vR  
  MMETSP1174-20130828|8747_1 199 VVQAALVVGADGIWSSVRGR 218
                 57889************965 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 3.8e-07
   TIGR01989 332 tervALvGDAAHrvHPLAGqGvNlGfsDvesLvka 366
                 ++rv L+GDA H + P  GqG N  + D+ sL++ 
  MMETSP1174-20130828|8747_1 428 NTRVTLIGDAIHPMSPFKGQGANQALVDAVSLARE 462
                 589**************************999876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.1e-05     0.019       3      34 ..      24      55 ..      23     103 .. 0.90
   2 ?    3.2   0.0     0.042        13     132     153 ..     196     217 ..     164     250 .. 0.79
   3 ?    2.8   0.0     0.052        16     260     290 ..     426     456 ..     416     463 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.1e-05
   TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekkel 34
                vv+vG+G+ G+++Al l +  +  +l+ek + 
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKDAT 55
                9**************************99865 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.042
   TIGR02032 132 ekkevtakivigAdGakskvak 153
                 +++ v+a +v+gAdG  s v+ 
  MMETSP1174-20130828|8747_1 196 NEVVVQAALVVGADGIWSSVRG 217
                 357799**********999975 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.052
   TIGR02032 260 tvtgnvllvGDAAglVkPltGeGIayamvag 290
                 t++++v l+GDA     P++G G + a+v +
  MMETSP1174-20130828|8747_1 426 TANTRVTLIGDAIHPMSPFKGQGANQALVDA 456
                 567889*****************99998755 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.3e-07   0.00014       2      34 ..      24      56 ..      23      68 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.3e-07
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdekl 34
                v+++G+Gi g+alal+L +r +   l+ekd++ 
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKDATF 56
                89***************************9765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   1.6e-06    0.0005       1      40 [.      24      63 ..      24      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.6e-06
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsf 40
                vv+vGgG+ G+a A++L +++++  l+E   +   Ra+ +
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKDATFDCRAQGY 63
                89**************************999998888876 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00062       0.2       3      32 ..      24      53 ..      22      62 .. 0.92
   2 ?    3.4   0.0     0.021       6.7     135     166 ..     193     226 ..     187     248 .. 0.80
   3 ?   -1.8   0.0      0.82   2.6e+02     262     286 ..     427     451 ..     421     460 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00062
   TIGR02023  3 vlviGggpsGaaaaetLakagievillere 32
                v+++Ggg +G a a  L++  i  +l+e++
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKD 53
                99**************************97 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
   TIGR02023 135 ageekksveadvviGaDGakskva..kelglgkn 166
                 a  +++ v+a +v+GaDG  s+v   k l+lg  
  MMETSP1174-20130828|8747_1 193 AHINEVVVQAALVVGADGIWSSVRgrKLLDLGAS 226
                 556678899************9976666777655 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.82
   TIGR02023 262 dservvLvGDaaGlvakasGeGiyy 286
                 ++ rv L+GDa   +++  G G   
  MMETSP1174-20130828|8747_1 427 ANTRVTLIGDAIHPMSPFKGQGANQ 451
                 6889*******99999999998655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   3.8e-05     0.012       1      38 [.      24      61 ..      24      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-05
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRag 38
                +v++G+G+gG AlA+ L +  i+  ++ek++++  Ra 
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKDATFDCRAQ 61
                689***************************99998886 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.3e-05     0.023       1      38 [.      24      62 ..      24      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.3e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekd.evgsgAsk 38
                v+++GgG+ G ++A+ L +r     l+ekd ++ ++A +
  MMETSP1174-20130828|8747_1 24 VVIVGGGIGGCALALALRQRHIPAVLFEKDaTFDCRAQG 62
                79****************************888888866 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.9e-05     0.025       2      34 ..      23      55 ..      22      62 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.9e-05
   TIGR04046  2 pvviiGaGqaGlsvsyllkkkgvdhvvlekktv 34
                pvvi+G+G  G +++  l+++++  v++ek+ +
  MMETSP1174-20130828|8747_1 23 PVVIVGGGIGGCALALALRQRHIPAVLFEKDAT 55
                89***************************9864 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001     0.031       3      36 ..      22      53 ..      20      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
   TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEak 36
                + vv+vGgGi G ++a al+++   +  vl+E++
  MMETSP1174-20130828|8747_1 22 RPVVIVGGGIGGCALALALRQR--HIPAVLFEKD 53
                679****************998..5667788876 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012     0.038     145     168 ..      21      44 ..      10     103 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
   TIGR03169 145 tkslavvGgGaagvElalalrkrl 168
                 ++++++vGgG++g  lalalr+r 
  MMETSP1174-20130828|8747_1  21 QRPVVIVGGGIGGCALALALRQRH 44 
                 469*****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 1154.38
//
Query:       MMETSP1174-20130828|8755_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 421.51
//
Query:       MMETSP1174-20130828|8758_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 634.97
//
Query:       MMETSP1174-20130828|8760_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-52  174.6   0.6    3.4e-52  174.2   0.4    1.2  1  TIGR00086 smpB: SsrA-binding protein


Domain annotation for each model (and alignments):
>> TIGR00086  smpB: SsrA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.4   8.3e-56   3.4e-52       2     144 .]      39     181 ..      38     181 .. 0.98

  Alignments for each domain:
  == domain 1    score: 174.2 bits;  conditional E-value: 8.3e-56
   TIGR00086   2 iakNkkakfdYeilekleaGivLkGsEvKsiragkvslkdayviikkgevfllnlsia.eykagsllnhderrkrkLLlhkkeikklkkkvkekgltlvplklyfkekgkvKveialakgkklhDKResikkrdakrelkralk 144
                 +a N+ a+ +Yeile+le+Gi+L G+Ev s r+g+++++d +++ik+gev+l n++ia + ++gs+++h+++r+rkLLlhkke++++++++k++gltlvplk yf  +gk+K+e++l kgk   DKR++ik+rd krel+r++k
  MMETSP1174-20130828|8760_1  39 VALNRPARRNYEILETLECGIKLVGTEVSSCRQGRMNMQDGFAVIKEGEVWLRNVNIAvHETTGSYFQHEPTRERKLLLHKKEVRNFDQQIKREGLTLVPLKAYFT-NGKLKIEMGLGKGKNVRDKRQDIKNRDGKRELSRMMK 181
                 578*******************************************************99999*******************************************.699*******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 714.29
//
Query:       MMETSP1174-20130828|8767_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 496.90
//
Query:       MMETSP1174-20130828|8770_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|8769_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.47
# Mc/sec: 1333.93
//
Query:       MMETSP1174-20130828|8774_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1640.03
//
Query:       MMETSP1174-20130828|8778_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 849.47
//
Query:       MMETSP1174-20130828|8779_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 379.12
//
Query:       MMETSP1174-20130828|8781_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|8783_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034    9.6   6.5      0.033    9.7   4.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.049    9.1   6.1      0.047    9.1   4.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.16    8.7   3.8       0.17    8.6   2.6    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.17    8.2   4.1       0.18    8.1   2.8    1.0  1  TIGR03545 TIGR03545: TIGR03545 family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.5   3.2e-05     0.033     738     795 ..       4      61 ..       1      71 [] 0.34

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.2e-05
   TIGR02168 738 erlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieq 795
                 +r+ +e +++++r+++le++l++  ee +e +++++++++ l++a++  e++++++++
  MMETSP1174-20130828|8783_1   4 QRHVEENQECQDRIQDLEEQLHRNVEENRESQDRIQDLTHDLAAARDYGEKQKKDLDD 61 
                 3333333333333333333333333333333333333333333333333333333322 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.2   4.6e-05     0.047     414     465 ..       8      59 ..       1      71 [] 0.28

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.6e-05
   TIGR02169 414 eelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedl 465
                 ee ++ + ++++l+++l+r  e+  e +++ ++l + +++a+   e+ k+dl
  MMETSP1174-20130828|8783_1   8 EENQECQDRIQDLEEQLHRNVEENRESQDRIQDLTHDLAAARDYGEKQKKDL 59 
                 2222222222222222222222222222222222222222222222222222 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.6   0.00017      0.17     219     267 ..       4      51 ..       1      60 [. 0.74

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00017
   TIGR01843 219 eklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardr 267
                 +   +e +e + ++q le+++ ++v+e  re+q+r+++l++ l++ard 
  MMETSP1174-20130828|8783_1   4 QRHVEENQECQDRIQDLEEQLHRNVEE-NRESQDRIQDLTHDLAAARDY 51 
                 555667778888888888888888865.468888999999888888875 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.8   0.00017      0.18     187     247 ..       3      64 ..       1      70 [. 0.91

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
   TIGR03545 187 Lpn.kqdleeykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlk 247
                 L   +++ +e ++r++ l+e+   n++e  ++   ++++  ++ a+++  ++ k dl +++k
  MMETSP1174-20130828|8783_1   3 LQRhVEENQECQDRIQDLEEQLHRNVEENRESQDRIQDLTHDLAAARDYGEKQKKDLDDAIK 64 
                 5555788899***********************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      241  (0.0587518); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 223.12
//
Query:       MMETSP1174-20130828|8789_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|8790_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.26s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|8795_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 279.06
//
Query:       MMETSP1174-20130828|8788_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.27s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 789.53
//
Query:       MMETSP1174-20130828|8791_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.59
# Mc/sec: 1684.54
//
Query:       MMETSP1174-20130828|8796_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1089.76
//
Query:       MMETSP1174-20130828|8798_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|8797_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.47
# Mc/sec: 1412.56
//
Query:       MMETSP1174-20130828|8802_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 628.89
//
Query:       MMETSP1174-20130828|8801_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 982.59
//
Query:       MMETSP1174-20130828|8805_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1689.46
//
Query:       MMETSP1174-20130828|8806_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   12.8   1.7     0.0044   12.6   1.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.011   13.5   0.0      0.019   12.7   0.0    1.4  1  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
      0.024   10.1   2.2      0.026   10.0   1.5    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.1   3.2e-06    0.0044     259     411 ..      16     166 ..       6     185 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.2e-06
   TIGR02168 259 eaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesle.aeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleq 411
                   +l++   e+e +rl  s ++  leel+++  +l++ ++r  +++   k++ ++++++++ l  ql++++s+ ++++ e ae ee l +++ +l +    + +e   e +   ++++ + + ++ + s++ el +q + l+ +++r+ + l+ 
  MMETSP1174-20130828|8806_1  16 MYDLQQQLREVEAKRLPPSDMQLGLEELTRQTVNLESLVEREVNRKDDWKAKIKEVRNQRDWLASQLHRWRSHHDRQALEEAEREELLGRVRSSLPASViGAYDE---EGKSWARSSDIAAQLVDGAGSALMELANQREMLKGTQKRVLDMLTT 166
                 455666667777777777888888888888888888888888888888888888888888888888888888888888888888888887776664443033333...4444444555555556666666666666666666666666555555 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.019       7      54 ..     153     200 ..     151     206 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
   TIGR03800   7 lqGavrehikalealgveavvvkrledldeidglilPGGesttlskll 54 
                 l+G  ++ +++l +lgv +++++ +e  + +d++i+ GG + t   l 
  MMETSP1174-20130828|8806_1 153 LKGTQKRVLDMLTTLGVSSSTIRIIERRNAVDKIIVFGGMALTSLCLY 200
                 788889999******************************988866655 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.5   1.9e-05     0.026     315     394 ..      20     102 ..       3     182 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.9e-05
   TIGR02169 315 eeeledaeerl...akaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkek 394
                 +++l+++e+++     ++  +++l ++  +le  +e+e  +++ +k+++ke +++++ l ++l     ++++   e +e++e 
  MMETSP1174-20130828|8806_1  20 QQQLREVEAKRlppSDMQLGLEELTRQTVNLESLVEREVNRKDDWKAKIKEVRNQRDWLASQLHRWRSHHDRQALEEAEREEL 102
                 22222222222111222333333333333333333333333333333333333333333333333333333222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 906.33
//
Query:       MMETSP1174-20130828|8800_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 1993.73
//
Query:       MMETSP1174-20130828|8808_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|8809_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 135.46
//
Query:       MMETSP1174-20130828|8810_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.80
# Mc/sec: 1306.69
//
Query:       MMETSP1174-20130828|8811_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1025.67
//
Query:       MMETSP1174-20130828|8813_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.68
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|8807_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 1771.11
//
Query:       MMETSP1174-20130828|8816_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|8814_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.5   0.1       0.33    7.6   0.0    2.6  2  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB


Domain annotation for each model (and alignments):
>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.011        46     182     206 ..     181     206 ..     147     215 .. 0.58
   2 ?    7.6   0.0   8.1e-05      0.33     197     294 ..     410     504 ..     386     511 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.011
   TIGR02800 182 nqqtilr.srepllsPawSpdgqkla 206
                  ++ i+r  ++ +l+ +w+pd ++la
  MMETSP1174-20130828|8814_1 181 LPRHICRgHTSAVLFTSWAPDARRLA 206
                 34445554445555555555555554 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 8.1e-05
   TIGR02800 197 awSpdgqklaYvsfekkkpeiyvqdlatgk.rekvasfkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgksiv 294
                 a+Spdg+ la  sf+k   ++ +++ +tg   ++++ + g +   a+s+D ++++ s s d + +i+ +   ++++  l  ++       +spDg +++
  MMETSP1174-20130828|8814_1 410 AFSPDGRFLASASFDK---KVKIWSGRTGVfIATLTGHVGRVYQVAWSSD-SRMVASASADSTVKIWEVRQPKTAKCTLPGHEDEVYALDWSPDGGQVA 504
                 7999999999999987...488999999973578888999999999****.999999999999999999999988888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1255.02
//
Query:       MMETSP1174-20130828|8817_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 291.77
//
Query:       MMETSP1174-20130828|8819_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 437.21
//
Query:       MMETSP1174-20130828|8820_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1059.79
//
Query:       MMETSP1174-20130828|8823_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|8831_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   13.0   5.6       0.11    9.1   3.9    2.1  1  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   3.9   2.7e-05      0.11     181     251 ..      49     138 ..      22     175 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 2.7e-05
   TIGR01932 181 ilqiaesdlkdlGievvDvrikkiklsd.elsesi..............ynRmrsEreaiArky....RsqGeekaeelrakaekEvvki 251
                 ++  aes l+d G+ev+D+ i+ i+l d +l++++              +n +++E++a A+k       qG++ a e++a+ae  ++++
  MMETSP1174-20130828|8831_1  49 MQAFAESMLQDSGVEVLDMSIEDIQLTDpNLQKAMsaaavkhnelesaeVNVLVAEKNADAQKRseiiEAQGHAAAVEILAQAEAKRIEV 138
                 556789999***************986524444331111111000000033344444444433211112334444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 799.27
//
Query:       MMETSP1174-20130828|8834_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 267.86
//
Query:       MMETSP1174-20130828|8832_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029    9.9  20.0      0.039    9.5  13.8    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.061    8.8  22.0      0.027    9.9  13.3    1.5  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        3.6    4.3  17.7          5    3.8  12.3    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  13.8   2.8e-05     0.039     769     950 ..      11     189 ..       2     212 .. 0.29

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.8e-05
   TIGR02168 769 eeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekk.vkelereleelreklaqlelrleeleveiaelqerlsee 950
                 ++  ee++ +l++ e+e+ e e ++++++++l++ ++++ +l+++l+ ++ee ++++ r+ ++  e   l+++l++l  ++  l+++ +++e++++ l ++++ +e+e e+++++   ++ a+++ r++  + +e +   + + + +  +++++l+e+  ++ l+ e +  +++++++ l ++
  MMETSP1174-20130828|8832_1  11 QSIYEEQSLQLQTIEQEKLETEFSLTEATDALAKKDATILSLSDQLELEHEETKNLNARAGKVAFENTVLTTKLQQLITAHVGLNKKKQDMEHQVRVLHQKIALIESEEEKVQADD--AQVAVEKFRRA--SFQEGIGGSNGEsAVTHSQSRKNLEEAEVRYFLKSEAIVEKMRKVKSDLDQQ 189
                 22222222233333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333222222222..11111111111..2222222111110111122222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  13.3     2e-05     0.027     800     932 ..       6     138 ..       2     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2e-05
   TIGR02169 800 elekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealee 932
                 + + l+   ++++ +l+ ie+e  + e++   + ++ +++ + i  l +q + +++e ++l+a+  +++ e   l  ++++L   + +L+k+ +++e+++r l++k+  +e+e ek +   ++ ++++   ++
  MMETSP1174-20130828|8832_1   6 NFNRLQSIYEEQSLQLQTIEQEKLETEFSLTEATDALAKKDATILSLSDQLELEHEETKNLNARAGKVAFENTVLTTKLQQLITAHVGLNKKKQDMEHQVRVLHQKIALIESEEEKVQADDAQVAVEKFRRAS 138
                 56788999999************************************************************************************************99999988877766666655544444 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  12.3    0.0037         5      95     260 ..      24     192 ..       4     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0037
   TIGR01843  95 aevarlraeanseeaiefpdillsae.d.....avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleee 260
                  e+++l++e    ea+++   l+++        ++ el +e+++++++r+ +++ +   l+ +++ql +   gl+++ q +++q++++++++   ++ +ek     +++   +  ra+ q+ ++ +++e +++ ++ ++  e+++       e + e++r+++++l++ + +
  MMETSP1174-20130828|8832_1  24 IEQEKLETEFSLTEATDA---LAKKDaTilslsDQLELEHEETKNLNARAGKVAFENTVLTTKLQQLITAHVGLNKKKQDMEHQVRVLHQKIALIESEEEKVQADDAQVAVEKFRRASFQEGIGGSNGESAVTHSQSRKNLEEAEVRYFLKSEAIVEKMRKVKSDLDQQRRK 192
                 233333443333333222...2222211223448889999999******************************************************999999999999999999*************************************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       339  (0.0826426); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.59
# Mc/sec: 568.22
//
Query:       MMETSP1174-20130828|8836_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1174-20130828|8838_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.65
# Mc/sec: 816.30
//
Query:       MMETSP1174-20130828|8841_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-81  270.2   0.0    9.8e-81  270.0   0.0    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    5.2e-59  197.8   0.0    5.9e-59  197.6   0.0    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    6.1e-47  158.4   0.0    7.7e-47  158.1   0.0    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.1e-44  148.7   0.0    5.5e-44  148.3   0.0    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    4.6e-38  128.9   0.0      6e-38  128.5   0.0    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    9.6e-34  115.0   0.0    1.2e-33  114.6   0.0    1.0  1  TIGR02053 MerA: mercuric reductase
    1.4e-30  104.4   0.0    1.9e-30  104.0   0.0    1.0  1  TIGR03452 mycothione_red: mycothione reductase
    5.5e-12   43.0   0.0    7.7e-12   42.5   0.0    1.1  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    9.3e-08   29.0   0.1    5.3e-07   26.5   0.0    2.1  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    7.6e-07   25.7   0.0    9.3e-07   25.4   0.0    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.2e-06   25.4   0.1    1.8e-06   24.8   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    8.1e-06   22.5   0.1    1.1e-05   22.0   0.0    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    1.6e-05   20.4   0.0    2.1e-05   20.0   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00024   18.2   0.0    0.00035   17.7   0.0    1.1  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
     0.0022   14.7   0.0     0.0033   14.2   0.0    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
  ------ inclusion threshold ------
      0.014   11.8   0.1      0.019   11.3   0.0    1.1  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit


Domain annotation for each model (and alignments):
>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.0   3.8e-83   9.8e-81     223     449 ..       5     235 ..       1     236 [. 0.94

  Alignments for each domain:
  == domain 1    score: 270.0 bits;  conditional E-value: 3.8e-83
   TIGR01421 223 evhklskvvkvekt.vegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvG.kveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltke..kqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtl 449
                 e+h+  +++ + k  v g l +t+  g++i  +d+++ a+Gr+p t  lgl+k+gv++d kg+i+vdey nt+  giya+Gd +    eltPva+aaGr+l +r+f+++  a++ ye++ tvvfshP+igt+Glte++a +kyG +++kv +ssf++m ya+  e  k k+ lklv   +ee+vvG+h+iG g+de+lqGfava++mGat+ df+++vaihPt seelvt+
  MMETSP1174-20130828|8841_1   5 ELHPGCTPTSITKDdVTGLLEVTFASGETIGGADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTtGYELTPVALAAGRRLGDRIFGSEPLARIAYEQIATVVFSHPPIGTIGLTEQQANDKYGSDKIKVRQSSFASMIYAFNDEdsKVKTGLKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEELVTF 235
                 67888888888875267799**************************************************************875158**************************************************************************87622667889********************************************************96 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.0   2.3e-61   5.9e-59     220     445 ..       2     235 ..       1     236 [. 0.92

  Alignments for each domain:
  == domain 1    score: 197.6 bits;  conditional E-value: 2.3e-61
   TIGR01424 220 rGirillktvlksiekvd.dG.lkvtlskdeeiv.advvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtd.rinltPvaikeaaafaetefknnp.tkadhdlvatavfsqPevatvGlseeearekft.ddievyraefrPmkatlsGr..qekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtm 445
                 +G ++++ ++ +si+k+d  G l vt +++e+i  ad vllatGr+P +  lgl++aGv+++ +g i vdey +ts  +iya+Gd+t    +ltPva+  ++ + +  f+++p  ++ ++++at vfs+P+++t+Gl+e++a +k++ d+i+v +++f  m  +++ +  + k+ lklv+   +++v+G+h++G+ + e++q+ a+a+++Gat++df+++va+hP+ +eelvt 
  MMETSP1174-20130828|8841_1   2 HGPELHPGCTPTSITKDDvTGlLEVTFASGETIGgADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTtGYELTPVALAAGRRLGDRIFGSEPlARIAYEQIATVVFSHPPIGTIGLTEQQANDKYGsDKIKVRQSSFASMIYAFNDEdsKVKTGLKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEELVTF 235
                 677899*********998457677777788888449*************************************************976269*******************9983679****************************96378***************97611557889********************************************************95 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.0     3e-49   7.7e-47     255     467 ..      25     234 ..       2     237 .. 0.90

  Alignments for each domain:
  == domain 1    score: 158.1 bits;  conditional E-value: 3e-49
   TIGR01438 255 lvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkds.keivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvk 467
                  v+f+ ++  + +  d vl+a Gr++ +  l+l+++gv v++k g i +de+e+t+  +iya+Gd      eltpva+ aG+ l dr+f+      + ye+++t vf+   +g++Gl+e++a +kyG ++++v +s f ++ y+  +++ + k   k+v l  e ervvG+h++Gp + e++qGfava+r+g +++d++++++ihp+ +ee+v+
  MMETSP1174-20130828|8841_1  25 EVTFA-SG-ETIGGADCVLLATGREPVTGLLGLDKAGVSVDRK-GFIEVDEYENTSRAGIYAIGDATTTGYELTPVALAAGRRLGDRIFGSEpLARIAYEQIATVVFSHPPIGTIGLTEQQANDKYGSDKIKVRQSSFASMIYAFNDEDSKVKTGLKLVLLLPE-ERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEELVT 234
                 45555.34.455678*************************975.89*******************************************75416899*****************************************************99*******98875.79********************************************987 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0   2.1e-46   5.5e-44     254     469 ..      12     234 ..       3     241 .. 0.91

  Alignments for each domain:
  == domain 1    score: 148.3 bits;  conditional E-value: 2.1e-46
   TIGR01423 254 pakvekn.adgskhvvfesgkeld.vdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdr.vmltpvainegaavvdtvfaskprk.tdhtkvasavfsippigvcglveeeaakky..ekvavyessftplmhnisgskyk.kfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcs 469
                 p+ ++k+   g   v+f sg+++   d v+la gr p ++ l ldk+gv +  kg i+vdey +t    iyaigd t     ltpva+  g  + d +f+s p +   + ++a+ vfs ppig+ gl+e++a  ky  +k+ v +ssf+ +++       k k   k+v    +  v+g+h++g  s e++q  a++++++a   df  ++ +hpt +eel++
  MMETSP1174-20130828|8841_1  12 PTSITKDdVTGLLEVTFASGETIGgADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTTgYELTPVALAAGRRLGDRIFGSEPLArIAYEQIATVVFSHPPIGTIGLTEQQANDKYgsDKIKVRQSSFASMIYAFNDEDSKvKTGLKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEELVT 234
                 66777652578899*******98538*************************************************9765278*********************7626899*************************98789***********998776555435678999999************************************************986 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   2.3e-40     6e-38     254     447 ..      33     232 ..       9     235 .. 0.90

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 2.3e-40
   TIGR01350 254 etleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvi.gklmLAhvAskegvvaaekiagkeks.eidykavPsviytePevasvGlteeqakeeg..ievkvgkfpfaangkalalee..tdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEai 447
                 +   a+ vL+a Gr+p +  lgl+k gv++d++g+i+vde+ +t+ +giyaiGD++  +  L  vA + g    ++i+g+e+   i y+++ +v++++P + ++Glte+qa++++   ++kv + +fa++  a   e+   +  +k+++    ++++G+h++g+   e+++ +a+av++++t ++ ++++  HPt+sE +
  MMETSP1174-20130828|8841_1  33 TIGGADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATtTGYELTPVALAAGRRLGDRIFGSEPLaRIAYEQIATVVFSHPPIGTIGLTEQQANDKYgsDKIKVRQSSFASMIYAFNDEDskVKTGLKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEEL 232
                 4456899***********************************************962689*******************998789**************************999755689999999**9999999888323455799999***********************************************975 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   4.9e-36   1.2e-33     245     446 ..      25     232 ..       3     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: 114.6 bits;  conditional E-value: 4.9e-36
   TIGR02053 245 tvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikg.lqlesvAakeGvvaAenalggae.akldlevlPkvvFtdPevAsvGlteeelakagi..evesrtvkleavpralinret...rGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 +v+  ++++   ad +l+AtGR+p++  L+L+k+gv +d++G+i+vde+ +ts ++iyA GD ++   +l  vA ++G    + ++g    a++ +e + +vvF +P + ++Glte++++ +    ++++r  +  ++  a    +    +G +Klv      +v+g++++++  +e+++ +a+a+++g+t  d    +++++t++E l
  MMETSP1174-20130828|8841_1  25 EVTFASGETIGGADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTTgYELTPVALAAGRRLGDRIFGSEPlARIAYEQIATVVFSHPPIGTIGLTEQQANDKYGsdKIKVRQSSFASMIYAFNDEDSkvkTG-LKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEASVAIHPTISEEL 232
                 5555556666679*************************************************987659******************9543489**************************988541145566666666666655544322145.69***************************************************986 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   7.5e-33   1.9e-30     238     443 ..      19     230 ..       5     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 7.5e-33
   TIGR03452 238 dddg.vtlelddGstve.advllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvs.spyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGld..itvkvqdygdvayGwamedte..glakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                 d  g + ++   G+t+  ad +l+atGr p + ll +++aGv vd +g ++vdey+ ts +g++a+Gd++ + y+l  va a  r + + +   e l ++ ++++ + vf++p i+t+Glteq+a ++  +  i+v+  +++ + y +  ed++  +  kl+      +++G h+iG+ +  ++q +  a+ +g + +++ +    ihp+++e
  MMETSP1174-20130828|8841_1  19 DVTGlLEVTFASGETIGgADCVLLATGREPVTGLLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATtTGYELTPVALAAGRRLGDRIFGSEPLARIAYEQIATVVFSHPPIGTIGLTEQQANDKYGSdkIKVRQSSFASMIYAFNDEDSKvkTGLKLVLLLPEERVVGIHMIGPGSDEMLQGFAVAVRMGATRHDFEA-SVAIHPTISE 230
                 334467899999***96379************************************************97257*****************************************************985440266666677788888888886521345899999999***************************9999865.5789999987 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     3e-14   7.7e-12     225     423 ..      27     223 ..      15     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3e-14
   TIGR03385 225 vltsgkvy.qaDlvilavGvkPnseli..kssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGt.sivkfldltiaktGltenelkklnidyktvevkakakan..YYPgakdll....lklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdltelela 423
                 ++ sg+++  aD v+la+G +P + l+  +++++ +++kG+i v+e+ +ts   iyaiGD++++ + +t      P+A aa   g+ ++++i G +   +    + + v f    i+++Glte+++   ++  + ++v++ + a   Y  +++d      lkl++    ++++g+ ++G    ++ ++  a+a+  ++t +d  e  +a
  MMETSP1174-20130828|8841_1  27 TFASGETIgGADCVLLATGREPVTGLLglDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTTGYELT------PVALAA---GRRLGDRIFGSEPLARIAYEQiATVVFSHPPIGTIGLTEQQAN-DKYGSDKIKVRQSSFASmiYAFNDEDSKvktgLKLVLLLPEERVVGIHMIGPG-SDEMLQGFAVAVRMGATRHDF-EASVA 223
                 67777776359**************9644789******************************9988654......777766...5668999999965555444440455566678***********9.8999*******9988753355555554311227889999999********975.899999999999999999985.44455 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.1e-09   5.3e-07     226     289 ..      36     102 ..      17     105 .. 0.87
   2 ?   -2.1   0.0       1.1   2.8e+02      48      76 ..     196     224 ..     195     235 .. 0.85
   3 ?   -0.9   0.0      0.49   1.3e+02      38      67 ..     239     268 ..     211     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.1e-09
   TIGR01292 226 kvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdG 289
                  +d+v +a G ep t ll      +++d++g+i vde  +Ts  G++a GD +++ ++   +a + G
  MMETSP1174-20130828|8841_1  36 GADCVLLATGREPVTGLLGLDkagVSVDRKGFIEVDEYENTSRAGIYAIGDATTTGYELTPVALAAG 102
                 579*************98644458******************************9998888877776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.1
   TIGR01292  48 PGfkegisgselmekmkeqakkfgaeiil 76 
                 PG  e+++g  ++ +m +  ++f+a++++
  MMETSP1174-20130828|8841_1 196 PGSDEMLQGFAVAVRMGATRHDFEASVAI 224
                 99999999999999999999999998876 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.49
   TIGR01292  38 lttttevenyPGfkegisgselmekmkeqa 67 
                  ++ te e yPG k+   ++ l+ ++++q 
  MMETSP1174-20130828|8841_1 239 GQVPTEDEKYPGKKKPYLAPYLAPQVTQQP 268
                 445566699******999999998888875 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.6e-09   9.3e-07     205     304 ..      12     111 ..       2     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.6e-09
   TIGR02374 205 tveivkesvekaerlrfkDGssle.adlvvlaaGirPrdeLa..aeaGlkvndrrGiivndsmqtsdPdiyavGecaehngrvyGLvaPlyeqakvladhllg 304
                   +i+k++v    ++ f+ G+++  ad v+la+G  P + L    +aG++v+ ++ i v+++ +ts   iya+G+      + y L       ++ l d++ g
  MMETSP1174-20130828|8841_1  12 PTSITKDDVTGLLEVTFASGETIGgADCVLLATGREPVTGLLglDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATT---TGYELTPVALAAGRRLGDRIFG 111
                 5689999999999**********549************99852368*****9666677****************9754...4455555555555555555555 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   7.2e-09   1.8e-06     362     442 ..      23     106 ..      12     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 7.2e-09
   TIGR01316 362 krkvpvtdeevkleadavivaiGqeank..iiaedsslktskrGtivvdedletsieGvfaGGdvir.GeatvilalgdGkraa 442
                   +v+ +  e++  ad+v++a G+e+    +  +++++ + ++G i+vde  +ts  G++a Gd+ + G +   +al+ G+r  
  MMETSP1174-20130828|8841_1  23 LLEVTFASGETIGGADCVLLATGREPVTglLGLDKAGVSVDRKGFIEVDEYENTSRAGIYAIGDATTtGYELTPVALAAGRRLG 106
                 55667777788889**********986532556788****************************97526677789*****9965 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.4e-08   1.1e-05     457     501 ..      58     102 ..      16     110 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.4e-08
   TIGR03140 457 davelnrrGeividergrtsvkGifaaGdvttvpykqiiiamGeG 501
                   v ++r+G i++de  +ts++Gi+a Gd+tt+ y    +a+ +G
  MMETSP1174-20130828|8841_1  58 AGVSVDRKGFIEVDEYENTSRAGIYAIGDATTTGYELTPVALAAG 102
                 459999*****************************9888888777 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   8.1e-08   2.1e-05     755     842 ..      28     116 ..       9     129 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 8.1e-08
   TIGR03315 755 vetgelveleadaviaavGeqvdtell..kklgieldekgkvvvneetketsvtnvfviGdakk.GPativeaiadgrkaakailsrenln 842
                  ++ge++   ad+v++a G++  t+ll  +k g+++d+kg+++v+e  ++ts ++++ iGda++ G      a+a gr+  + i+  e l 
  MMETSP1174-20130828|8841_1  28 FASGETIG-GADCVLLATGREPVTGLLglDKAGVSVDRKGFIEVDEY-ENTSRAGIYAIGDATTtGYELTPVALAAGRRLGDRIFGSEPLA 116
                 56677775.69**********999995338***************99.99***********986266666689*********999887765 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-06   0.00035     221     282 ..      25      89 ..       5      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.4e-06
   TIGR03169 221 alllaegetl.eadavllatgakapaw...LaesglsldedGflavkktLqslshpevFaaGDcav 282
                 +++ a+get+  ad vllatg ++ +    L + g+s+d++Gf++v++   + s+  ++a GD  +
  MMETSP1174-20130828|8841_1  25 EVTFASGETIgGADCVLLATGREPVTGllgLDKAGVSVDRKGFIEVDEYENT-SRAGIYAIGDATT 89 
                 7777788877359*********99874223689*************998766.9*********876 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05    0.0033     393     470 ..      27     105 ..      12     109 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR01317 393 evpgseevleadlvllalGfvgpeqa.llddlgvdkdergnikaeldesetsidGvfaaGdar.rGqslivwaineGrea 470
                   ++ e++  ad vlla G +       ld+ gv  d++g i+  ++ ++ts  G++a Gda   G  l   a++ Gr+ 
  MMETSP1174-20130828|8841_1  27 TFASGETIGGADCVLLATGREPVTGLlGLDKAGVSVDRKGFIE-VDEYENTSRAGIYAIGDATtTGYELTPVALAAGRRL 105
                 5567789999*********987665536899***********4.4455569**********8526999999999999975 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.5e-05     0.019     242     282 ..      44      87 ..      19     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.5e-05
   TIGR03143 242 vGyvPsself...kgkvelderGyvvtnedletnveGvyaaGdl 282
                  G  P + l+   k  v +d +G++  +e+ +t+  G+ya+Gd 
  MMETSP1174-20130828|8841_1  44 TGREPVTGLLgldKAGVSVDRKGFIEVDEYENTSRAGIYAIGDA 87 
                 56666665443336789**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 777.27
//
Query:       MMETSP1174-20130828|8846_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 967.92
//
Query:       MMETSP1174-20130828|8849_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 443.96
//
Query:       MMETSP1174-20130828|8851_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|8848_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 921.39
//
Query:       MMETSP1174-20130828|8850_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1307.32
//
Query:       MMETSP1174-20130828|8853_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-17   59.0   0.0    5.4e-17   58.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.4e-07   27.4   0.1    6.6e-07   26.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.6e-20   5.4e-17      26     196 ..      37     200 ..      14     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.6e-20
   TIGR03903  26 rReialCarLshPnivaLlDsGeaedgllFavFeyveG...rtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasvae 196
                  Rei+l + L hPniv+L D     d  lF vF yve      + ++ + + +L +    +L+ q + ++a  hd+ v+hRDLkPqn+++   d +++ k+ DFG++ + +        +   t+ev+ +  Y aPe L g+ +  ++ D ++ G i+ e    ++   G+s  +
  MMETSP1174-20130828|8853_1  37 IREISLLKDLVHPNIVHLRDVI-FHDSKLFLVFQYVEQdlkNFMDDREKKNIPLGSDLIKHLLRQLVKGMAFCHDNRVLHRDLKPQNLLL---DRQNTLKLADFGLARVFSVPL----RQF--THEVV-TLWYRAPEILLGDKIySTAVDTWSVGCILAEMANLHPLFPGDSEID 200
                 59****************9985.5677*********96222346677788999***********************************99...566778999***998876433....344..56776.779******9999872456799999999999877777777777555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   3.2e-10   6.6e-07      68     138 ..      60     141 ..      36     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 3.2e-10
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 ++++  +v++y+e ++lk+ ++++e+           +ll+++ + ++ +H+++++h Dl ++N+++ ++++l l DfGL+++
  MMETSP1174-20130828|8853_1  60 HDSKLFLVFQYVE-QDLKNFMDDREKkniplgsdlikHLLRQLVKGMAFCHDNRVLHRDLKPQNLLLdRQNTLKLADFGLARV 141
                 4455779999997.57888888877678899999999999999************************5578889******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1014.23
//
Query:       MMETSP1174-20130828|8859_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1080.66
//
Query:       MMETSP1174-20130828|8873_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.63
# Mc/sec: 180.18
//
Query:       MMETSP1174-20130828|8879_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 195.71
//
Query:       MMETSP1174-20130828|8877_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.68
# Mc/sec: 702.65
//
Query:       MMETSP1174-20130828|8881_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 883.13
//
Query:       MMETSP1174-20130828|8883_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 267.86
//
Query:       MMETSP1174-20130828|8888_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 168.50
//
Query:       MMETSP1174-20130828|8889_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|8891_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 343.97
//
Query:       MMETSP1174-20130828|8885_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 733.51
//
Query:       MMETSP1174-20130828|8890_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-13   47.2   0.0    1.7e-06   25.7   0.0    2.1  2  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.2e-10   1.7e-06      47     110 ..       4      72 ..       1      77 [. 0.78
   2 !   19.7   0.0   2.9e-08   0.00012     114     152 ..     113     151 ..     102     152 .] 0.87

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.2e-10
   TIGR02540  47 lqrelgpshfnvlafpcnqfgesepksskeiesfar.knygvtf....pifskikilgseaepafrflv 110
                 l  ++g + f+ + fpcnqfg++ ++ + e  +  +    g  f     i++k+ + g +a+p f+++ 
  MMETSP1174-20130828|8890_1   4 LVEKYGDQGFSAVGFPCNQFGHQTNERDTEFLNTLKyVRPGNGFepkgDIMKKTDVNGFDAHPLFKWMK 72 
                 667899******************99999976644412334444222279****************985 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.9e-08
   TIGR02540 114 kkeprwnfwkylvdpegkvvkawkpeesveeirpeitsl 152
                 + +  wnf k+lvd eg+vvk ++   + ++i ++i +l
  MMETSP1174-20130828|8890_1 113 RSDIAWNFEKFLVDKEGHVVKRYSRYYPTADIGKDIENL 151
                 55678*************************999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|8895_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-36  122.3   2.5    6.9e-36  121.9   1.7    1.1  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    7.5e-30  102.0   0.6      1e-29  101.6   0.4    1.1  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    7.8e-27   92.0   1.2    1.3e-26   91.3   0.9    1.3  1  TIGR02765 crypto_DASH: cryptochrome, DASH family


Domain annotation for each model (and alignments):
>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   1.7     5e-39   6.9e-36     321     465 ..       8     150 ..       4     163 .. 0.93

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 5e-39
   TIGR02766 321 kfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdapesvlkaagvelgsnypkpi 465
                 +++aw+ g tg+plvda mr+lw  gw+ + +r vv+ f+v +l + w+ g  +f dtl+dadl  +++ wq    s pd  ++  +  p    +  dpeg yvrrw+pe+a lp  ++  pw+a  ++l  a v l    p p 
  MMETSP1174-20130828|8895_1   8 RLRAWQSGLTGFPLVDAAMRQLWVWGWMPNYLRHVVAGFLVEYLNVDWRHGEAWFHDTLVDADLAINAFMWQNGGHSGPDQWNF--VMHPVNAAKSCDPEGAYVRRWVPEVALLPLPYLFSPWEATPTMLVKANVRLVHCRPDPE 150
                 789**********************************************************************99999*98776..7789999999***************************************9988877775 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.4   7.6e-33     1e-29     317     435 ..       7     124 ..       3     135 .. 0.93

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 7.6e-33
   TIGR03556 317 ahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsldtkdl 435
                  +++aw  g tg+p+vdaamrql   gwm n  r +va fl+  l ++w++ge +f ++l+d dla n   wq    sg d   + ++ p+  a+  dpe+ y+rrw+pe++ l   +l
  MMETSP1174-20130828|8895_1   7 GRLRAWQSGLTGFPLVDAAMRQLWVWGWMPNYLRHVVAGFLVEYLNVDWRHGEAWFHDTLVDADLAINAFMWQNGGHSGPDQWNF-VMHPVNAAKSCDPEGAYVRRWVPEVALLPLPYL 124
                 5689****************************************************************************98776.789**********************98876666 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.9   9.5e-30   1.3e-26     320     431 .]       6     116 ..       2     116 .. 0.94

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 9.5e-30
   TIGR02765 320 ekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 + +l++w++g tg+plvda+mr+L   G+m n  R +va flv+ l++dWr+G +wf  +LvD D + n   Wq     g d   + +  ++  ak+ Dp+g+yv++Wv+e+
  MMETSP1174-20130828|8895_1   6 DGRLRAWQSGLTGFPLVDAAMRQLWVWGWMPNYLRHVVAGFLVEYLNVDWRHGEAWFHDTLVDADLAINAFMWQNGGHSGPD-QWNFVMHPVNAAKSCDPEGAYVRRWVPEV 116
                 56899*********************************************************************99888888.557778999*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1008.25
//
Query:       MMETSP1174-20130828|8900_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 310.02
//
Query:       MMETSP1174-20130828|8902_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 430.03
//
Query:       MMETSP1174-20130828|8904_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 252.98
//
Query:       MMETSP1174-20130828|8906_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 206.59
//
Query:       MMETSP1174-20130828|8908_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 689.83
//
Query:       MMETSP1174-20130828|8909_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.75
# Mc/sec: 482.20
//
Query:       MMETSP1174-20130828|8911_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|8905_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.59
# Mc/sec: 1362.40
//
Query:       MMETSP1174-20130828|8910_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   51.1   0.0    4.1e-14   50.5   0.0    1.3  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   9.9e-18   4.1e-14      10     136 ..     140     274 ..     134     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 9.9e-18
   TIGR02540  10 ikgrlvslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygv.tfp...ifskikilgseaepafrflvds.....skkeprwnfwkylvdpegkvvkaw 136
                  kg+ + l k  gkv l+vnv  +   + k+y +l  l +++    + +lafp +q g  e++ s+ +   a +nyg   fp   +f+k+ ilg+ ++p fr+l+ +      +   + nf k+l+d +g  ++ +
  MMETSP1174-20130828|8910_1 140 YKGKDLPLGKLSGKVFLIVNVKNDDPEALKQYPSLTYLSNKYAKDGLRILAFPTDQ-GWFEADVSEMVRLRALQNYGFgQFPlsiVFDKMDILGPTSHPLFRYLMSAlpnpnGQSSISLNFEKFLLDENGVPLRRY 274
                 69****************************************************99.999*****************746995545******************986222223556789*******9999766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1234.28
//
Query:       MMETSP1174-20130828|8912_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 784.86
//
Query:       MMETSP1174-20130828|8913_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1075.23
//
Query:       MMETSP1174-20130828|8915_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|8916_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1403.25
//
Query:       MMETSP1174-20130828|8919_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   19.2   0.0    0.00033   18.2   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0033   14.7   0.0     0.0048   14.2   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0033   14.7   0.1     0.0097   13.2   0.1    1.9  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0048   14.2   0.3      0.014   12.7   0.2    1.7  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.009   13.6   0.0      0.016   12.8   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0092   12.9   0.4      0.018   11.9   0.3    1.4  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.029   11.5   0.0      0.044   10.9   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.7e-07   0.00033      17      58 ..      91     133 ..      82     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.7e-07
   TIGR00537  17 elknddvleiGaGtGlvairlkekgk.kivatdinPfavkllk 58 
                  l+n  vle+G+GtGlv+ +++  g+  ++atd + +  +l++
  MMETSP1174-20130828|8919_1  91 ALRNTSVLELGTGTGLVSLAAAAGGArDVMATDYASAPLRLVE 133
                 578899**************99999879*****8877666655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.2e-06    0.0048     158     192 ..      92     126 ..      77     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.2e-06
   TIGR00406 158 lkdkkviDvGcGSGiLsiaalklgaakvvavDiDp 192
                 l++ +v+++G+G G++s+aa+  ga+ v+a D  +
  MMETSP1174-20130828|8919_1  92 LRNTSVLELGTGTGLVSLAAAAGGARDVMATDYAS 126
                 45689**************************9865 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.7e-05    0.0097      49      95 ..      89     138 ..      77     235 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
   TIGR02021  49 pkdslkGkkvlDAGCGtGllsielAkrGai.vkavDisek...lvelarkr 95 
                 + d+l+ + vl+ G GtGl+s   A+ Ga+ v+a D + +   lve+a + 
  MMETSP1174-20130828|8919_1  89 G-DALRNTSVLELGTGTGLVSLAAAAGGARdVMATDYASAplrLVEVAASM 138
                 4.4588899*******************976*****987522366665433 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   2.4e-05     0.014      88     129 ..      93     133 ..      77     143 .. 0.79
   2 ?   -2.2   0.0      0.82   4.8e+02      74      95 ..     221     241 ..     217     284 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.4e-05
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvar 129
                 ++++vl+lgtG+G + la a+     +v+a+D  ++ l++ +
  MMETSP1174-20130828|8919_1  93 RNTSVLELGTGTGLVSLAAAAG-GARDVMATDYASAPLRLVE 133
                 4568*************99987.6779999999999988765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.82
   TIGR03534  74 ElLveaaleelkkkeklkvlDl 95 
                 E+ ve+ l+ l++++ l+++D+
  MMETSP1174-20130828|8919_1 221 EAFVETLLDLLPREA-LTFVDV 241
                 555566665555555.444443 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.8e-05     0.016      33      80 ..      92     140 ..      79     186 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-05
   TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..n 80 
                 + +++vL++G GtG+++ a ++    + ++a+D +   l+ ++ + s  +
  MMETSP1174-20130828|8919_1  92 LRNTSVLELGTGTGLVSLAAAAGGARD-VMATDYASAPLRLVEVAASmqA 140
                 56789*********8888877776666.*******999999887776551 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   3.1e-05     0.018     116     156 ..      95     134 ..      77     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.1e-05
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaee 156
                   +l+lgtG+G ++la A+  +   v a D  +  l ++e 
  MMETSP1174-20130828|8919_1  95 TSVLELGTGTGLVSLAAAAGGA-RDVMATDYASAPLRLVEV 134
                 579***************9999.99******9999999885 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.5e-05     0.044      46      91 ..      90     136 ..      61     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.5e-05
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklha 91 
                 + l++++vl++G+G Gl+s + a  ga  v++ D ++  ++  ++ a
  MMETSP1174-20130828|8919_1  90 DALRNTSVLELGTGTGLVSLAAAAGGARdVMATDYASAPLRLVEVAA 136
                 678899********************999*****9987665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 883.13
//
Query:       MMETSP1174-20130828|8922_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|8924_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       408  (0.0994637); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 863.67
//
Query:       MMETSP1174-20130828|8925_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|8928_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 350.06
//
Query:       MMETSP1174-20130828|8932_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|8934_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1174-20130828|8944_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.77
# Mc/sec: 857.07
//
Query:       MMETSP1174-20130828|8943_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 2231.24
//
Query:       MMETSP1174-20130828|8951_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   17.4   1.3    0.00058   15.7   1.0    1.6  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00072   17.0   4.1     0.0014   16.1   1.4    2.3  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0012   17.3   0.3     0.0022   16.5   0.2    1.5  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.0   4.2e-07   0.00058     464     513 ..      93     141 ..      55     169 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.2e-07
   TIGR02917 464 naslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqek 513
                  a++++ lg+iy ++ d ++Ar  f kAL+  +d  +A +nLA ++l+++
  MMETSP1174-20130828|8951_1  93 VAEVHVNLGQIYAQQSDRDGARGHFLKALE-HRDTSAAHVNLALIALANG 141
                 377888888888888888888888888888.5677788888888887665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.4     1e-06    0.0014      28      79 ..      91     141 ..      80     177 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1e-06
   TIGR02521  28 ekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg 79 
                 e++a+++v+L+  Y +q d + A+    kAle+  + + a+  lAl+    g
  MMETSP1174-20130828|8951_1  91 ESVAEVHVNLGQIYAQQSDRDGARGHFLKALEHR-DTSAAHVNLALIALANG 141
                 789*****************************95.45567777777655544 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.6e-06    0.0022       5      84 ..      56     140 ..      53     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.6e-06
   TIGR02795   5 eykaallvlkegdYakAeqaFkaFlkkYPkstl....apnAqYwlGealyakkkykdAakaflevvkkypkse.kapdallklge 84 
                  +++al + +eg++a+A ++++ Fl    + +l    +++ +  lG+ + ++++ + A  +fl+++++  +s+  +  al+ l++
  MMETSP1174-20130828|8951_1  56 LFHSALAHQQEGNFAEAMAEYEGFLAGAADANLpgesVAEVHVNLGQIYAQQSDRDGARGHFLKALEHRDTSAaHVNLALIALAN 140
                 678899999***************98877765422227788***********************998666554144556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|8954_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.62
# Mc/sec: 123.47
//
Query:       MMETSP1174-20130828|8953_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1472.72
//
Query:       MMETSP1174-20130828|8948_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 1492.68
//
Query:       MMETSP1174-20130828|8957_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|8962_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|8963_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 204.81
//
Query:       MMETSP1174-20130828|8964_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|8960_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1344.20
//
Query:       MMETSP1174-20130828|8965_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 556.83
//
Query:       MMETSP1174-20130828|8972_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 424.51
//
Query:       MMETSP1174-20130828|8975_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 710.94
//
Query:       MMETSP1174-20130828|8977_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       322  (0.0784983); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 274.68
//
Query:       MMETSP1174-20130828|8978_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 305.46
//
Query:       MMETSP1174-20130828|8981_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 411.97
//
Query:       MMETSP1174-20130828|8980_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 608.62
//
Query:       MMETSP1174-20130828|8987_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|8988_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|8998_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 750.97
//
Query:       MMETSP1174-20130828|9002_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|9006_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 233.81
//
Query:       MMETSP1174-20130828|9003_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 803.93
//
Query:       MMETSP1174-20130828|9005_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 553.50
//
Query:       MMETSP1174-20130828|9004_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1690.72
//
Query:       MMETSP1174-20130828|9012_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 605.60
//
Query:       MMETSP1174-20130828|9019_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-27   94.1   0.0    2.2e-27   93.9   0.0    1.1  1  TIGR00296 TIGR00296: uncharacterized protein, PH0010 family


Domain annotation for each model (and alignments):
>> TIGR00296  TIGR00296: uncharacterized protein, PH0010 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   5.4e-31   2.2e-27      44     188 ..      41     186 ..      10     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 5.4e-31
   TIGR00296  44 rgvfitlkkksnke..LrGCiGtpekvkplaealeeaaisaaleDprfsPvkkeelddikvevsiLtppetievegPkddiekielGkdGlivefg....pkrGllLPqvaveygwdkeeflanlilkaGlppDnflteeievy...rfegkif 188
                   +fit+++ + +   LrGCiGt  +  +l  ++ ++  s+a +D+rf+P+  +e+ +++++vs+L ++e         d  ++e+G++G+ + f+     ++ ++LP+va e+gw++  +l  l+ kaG  p +f +e+ + +   r+++  +
  MMETSP1174-20130828|9019_1  41 CPMFITWNTSTPNGlqLRGCIGTLSP-IRL-SSMTDYVHSSAFNDRRFEPISAREVASLHCSVSLLVQYEDA------SDAYDWEVGVHGILISFRvgskKYSATYLPEVAREQGWNQSATLKSLVRKAGADPRTFTDEGLRAIhttRYQSSKY 186
                 568****997654345**********.455.6799*******************************999864......5679**********998632224555*********************************99866542338887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|9022_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-12   44.7   0.5      2e-12   44.4   0.4    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0004   16.2   2.4    0.00052   15.8   1.7    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.016   12.8   1.8      0.028   12.0   0.6    1.9  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.4   1.4e-15     2e-12     103     229 ..       7     133 ..       2     189 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.4e-15
   TIGR00990 103 sadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrde 229
                 ++ +  e   ++   ++ e+ +   a+lke+Gnka+++ df  a  +y++ + l +     +snraa    l  l+  + d+ + ++l+pd+vk   r+a a +  gk +da  d   ++l    +d+
  MMETSP1174-20130828|9022_1   7 TVMSAMEATLANSGAVASEKSQMDVAELKELGNKAFGDEDFAAADRYYTQCIALDPSqHSLWSNRAAARTKLDMLDGALSDAEECIRLKPDWVKGYHRKALALKSSGKITDAY-DTYSLALSKCAKDA 133
                 66666777777777788888888899****************************98625799*************************************************94.55445554444444 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.7   3.8e-07   0.00052     104     257 ..      10     165 ..       5     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.8e-07
   TIGR02917 104 gkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnai..aallalatilleegefeeAekkadallkka 257
                  +++ +l++++++ s++++  ++ l  +g+ a+g +++++A + + q  a +p++ +     A    + + ld+a   ++e +  +p+ v+ +  k+  l ssg+i  A ++y  a+    +++  + ++ +    +++ ++e+  + a+++ k++
  MMETSP1174-20130828|9022_1  10 SAMEATLANSGAVASEKSQMDVAELKELGNKAFGDEDFAAADRYYTQCIALDPSQHSLWSNRAAARTKLDMLDGALSDAEECIRLKPDWVKGYHRKALALKSSGKITDAYDTYSLALSKCAKDAwlKREAKRCEKEMRKAHLEQPVESAEEMEKIF 165
                 5678899999999988888888888889999****************888888887777777777777789******************************************9998654444323778888888888888888888888888876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   2.1e-05     0.028      16     132 ..      29     145 ..      17     149 .. 0.89
   2 ?   -1.3   0.0      0.26   3.6e+02       2      26 ..     202     226 ..     201     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
   TIGR02552  16 eqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeam 132
                  +  ++ +l+ +++   +++ A + ++  +aldp ++  w   aa++ +l+  ++A+   + +  l++d  + + + a  l   g+  +A ++  la+ ++++++  +   +r+e+ 
  MMETSP1174-20130828|9022_1  29 MDVAELKELGNKAFGDEDFAAADRYYTQCIALDPSQHSLWSNRAAARTKLDMLDGALSDAEECIRLKPDWVKGYHRKALALKSSGKITDAYDTYSLALSKCAKDAWLKREAKRCEKE 145
                 455566677778889999************************************************************************************999777777777765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.26
   TIGR02552   2 aegatlksllgldeeqleaiYalAY 26 
                 ++g t+ s+ +++++q++++ +  Y
  MMETSP1174-20130828|9022_1 202 SDGNTPTSIADYEQDQMTDLPTENY 226
                 6899999**********99866666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1008.53
//
Query:       MMETSP1174-20130828|9027_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 257.54
//
Query:       MMETSP1174-20130828|9026_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1115.62
//
Query:       MMETSP1174-20130828|9032_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 743.45
//
Query:       MMETSP1174-20130828|9034_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   29.4   0.0    4.5e-08   29.4   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.1e-11   4.5e-08     593     675 ..       2      86 ..       1     157 [. 0.64

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.1e-11
   TIGR00870 593 llfgaYvviavilLLNmLIAmmgntyqeiaeeadeeWkfqraklvlslee.eggtlpppfslipspksfvg.likliekklgkkr 675
                 ll++aYv++  i+LLNmLIA+++++y   + +a  +    r+ l  +    ++++++ p  +    k f+  l ++i+++l  ++
  MMETSP1174-20130828|9034_1   2 LLLVAYVFLVNIMLLNMLIAIVSDSYDYAQVHAARLFLRTRVDLAAEFVTiGVAKCREPTCFTELVKFFLDpLAERIFEPLITQK 86 
                 79************************99888888877666666666654423446777766666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 646.05
//
Query:       MMETSP1174-20130828|9033_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1174-20130828|9030_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1154.20
//
Query:       MMETSP1174-20130828|9036_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|9038_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1170.69
//
Query:       MMETSP1174-20130828|9035_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   11.7   2.7        4.6    5.6   0.0    2.9  3  TIGR02663 nifX: nitrogen fixation protein NifX
       0.97    5.1   5.8        1.2    4.8   4.1    1.0  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR02663  nifX: nitrogen fixation protein NifX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.003       6.1      34      65 ..      36      67 ..      28      72 .. 0.85
   2 ?   -0.8   0.0      0.21   4.4e+02      83     102 ..     108     127 ..      68     142 .. 0.54
   3 ?    5.6   0.0    0.0022       4.6     105     116 ..     181     192 ..     176     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.003
   TIGR02663 34 rfveaiefeeeseedgeedkiaakvealkdca 65
                r v+a ++  +s++d+ + k++a++eal++++
  MMETSP1174-20130828|9035_1 36 RRVNARKWIATSDKDDLRRKVEARLEALEEAQ 67
                567888888899****************9985 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.21
   TIGR02663  83 akihPikvkeeesisevlek 102
                 +k    k+ +++s+++vl +
  MMETSP1174-20130828|9035_1 108 KKSDITKRFRPRSLAQVLLE 127
                 33333445555555555555 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0022
   TIGR02663 105 kvlkgnPPPwlr 116
                 +vlk +PPPwl+
  MMETSP1174-20130828|9035_1 181 SVLKDTPPPWLQ 192
                 69********96 PP

>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.1    0.0006       1.2      10      96 ..      27     111 ..      20     129 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0006
   TIGR00592  10 eevdeeeYskraqekldddiivdddgvgyvedgreffed..eeDaldlkkdkgsaakakkkkkenvkkvtkkarikavriaalakkkkd 96 
                 ee  ++e ++r++++  +    +dd   +ve + e  e+  e D+  +++d+++++++ + + ++ k     + +k+++ + +a kk d
  MMETSP1174-20130828|9035_1  27 EETKKRETRRRVNARKWIATSDKDDLRRKVEARLEALEEaqEADFVGEEDDEWQDEEQVESRGRKSK----IKAVKKLKGSRAASKKSD 111
                 677788889999999999999***********999888888**************999888888877....345566666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 734.40
//
Query:       MMETSP1174-20130828|9039_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1375.89
//
Query:       MMETSP1174-20130828|9044_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 226.27
//
Query:       MMETSP1174-20130828|9043_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 649.24
//
Query:       MMETSP1174-20130828|9051_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 1796.85
//
Query:       MMETSP1174-20130828|9055_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1174-20130828|9059_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 154.75
//
Query:       MMETSP1174-20130828|9061_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 744.27
//
Query:       MMETSP1174-20130828|9060_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-56  187.6   0.0    2.2e-21   74.1   0.0    4.1  4  TIGR00229 sensory_box: PAS domain S-box protein
    1.3e-10   39.2   0.0     0.0019   16.1   0.0    4.2  4  TIGR02373 photo_yellow: photoactive yellow protein
    1.7e-09   35.0   0.8    6.7e-06   23.2   0.0    2.9  3  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR
    3.4e-08   30.7   0.0       0.11    9.3   0.0    4.1  4  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
     0.0038   13.6   0.1       0.15    8.4   0.1    2.8  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   0.00012      11     116 ..     144     250 ..     141     251 .. 0.89
   2 !   52.1   0.0   1.8e-17   1.5e-14       7     123 ..     260     378 ..     256     380 .. 0.87
   3 !   74.1   0.0   2.7e-24   2.2e-21       2     125 ..     376     500 ..     375     501 .. 0.92
   4 !   40.6   0.0   6.4e-14   5.3e-11       3      73 ..     497     568 ..     495     572 .] 0.94

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.5e-07
   TIGR00229  11 lesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDI 116
                 +++   ++  + ++G+++y N+ +++++   + +++G+n+++++  +d e + +++++   +       e ++++  G ++ + +s+ ++rd +g++ g + + rD+
  MMETSP1174-20130828|9060_1 144 MDNCTLMVLELALDGTVQYCNQHMARVLRVDPRDAVGQNFTQIFLGDDAETTMKKLMQSAHESVTESDLECELTTVTGAVVKILLSTMLVRDeEGKVEGLILSGRDV 250
                 5666778888999*****************************9999999999999999888555555556666999*****************************98 PP

  == domain 2    score: 52.1 bits;  conditional E-value: 1.8e-17
   TIGR00229   7 yrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGs.eiwvevsvspird.aggelgvvgivrDIterkeae 123
                 +  il s+ ++++ +d +G++  +N+ +e+++GY+++e++G+n+l+ l+p+ +r  v++ i+r+le  +e+    + +++k G  ++ +  ++++ rd +g++lg +gi  + t +  +e
  MMETSP1174-20130828|9060_1 260 LFRILKSVGVPVFGTDNDGIVNLWNDGAERLLGYTEAEILGQNMLKvLVPPKHRASVQAFINRALE-GIEVEKFAFPLQTKEGAqVVEIPFNTTSRRDsKGRILGLIGIGDETTPINAQE 378
                 556999999*********************************************************.46777778888*****7255678899999998999999999988888766555 PP

  == domain 3    score: 74.1 bits;  conditional E-value: 2.7e-24
   TIGR00229   2 eseeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIterkeaeee 125
                 ++e  y  +l++++++i+ vde+G++  +N+a+ +++GYs+ee++ +n+   ++  e++  v+e++ ++l+g  e    + ++ +k+G ++ + ++ ++ rd +g+++gv+gi++DIter  +e+e
  MMETSP1174-20130828|9060_1 376 AQEHEYARLLDTANAPIFGVDEDGKVNVWNKAAFKLTGYSPEEIMSHNFVSnFVRVEHSTSVQEVLDKALQGL-ECSNLQITLNTKSGAWVNILLNATSRRDvNGRVVGVLGIAQDITERMAQEQE 500
                 57899********************************************999*******************54.44444444479***********************************999997 PP

  == domain 4    score: 40.6 bits;  conditional E-value: 6.4e-14
   TIGR00229   3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlege 73 
                 +e+ +  ++++++++i+ vd++G+++ +N+++  ++GY+ e+ +G+++ + +i+++ r  v+e++ ++l+g 
  MMETSP1174-20130828|9060_1 497 QEQEFVRLIDTANAPIFGVDKNGKVTVWNKSASNVTGYTVEDTMGHHLVQdFISPDFRTSVQEVLDKALQGS 568
                 789999*******************************************99******************953 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.015        12      21      63 ..     143     185 ..     136     230 .. 0.76
   2 ?    4.1   0.0     0.012        10      31      71 ..     273     313 ..     257     357 .. 0.77
   3 !   16.1   0.0   2.4e-06    0.0019      30      85 ..     393     451 ..     367     461 .. 0.73
   4 !    9.5   0.0   0.00026      0.21       8      64 ..     489     547 ..     483     566 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.015
   TIGR02373  21 eldalafGaiqldesGrilkynkaegelaGrdPekviGknffk 63 
                  +d+ ++  + l  +G+++  n+  +++   dP++ +G+nf +
  MMETSP1174-20130828|9060_1 143 VMDNCTLMVLELALDGTVQYCNQHMARVLRVDPRDAVGQNFTQ 185
                 567777778888999****9********************843 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.012
   TIGR02373  31 qldesGrilkynkaegelaGrdPekviGknffkevaPctds 71 
                   d++G +  +n    +l G +  +++G+n++k + P  + 
  MMETSP1174-20130828|9060_1 273 GTDNDGIVNLWNDGAERLLGYTEAEILGQNMLKVLVPPKHR 313
                 5799*****************************99986443 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 2.4e-06
   TIGR02373  30 iqldesGrilkynkaegelaGrdPekviGknffke...vaPctdskefsGrfkegvasG 85 
                   +de+G++  +nka  +l+G +Pe+++ +nf  +   v   t  +e   + ++g    
  MMETSP1174-20130828|9060_1 393 FGVDEDGKVNVWNKAAFKLTGYSPEEIMSHNFVSNfvrVEHSTSVQEVLDKALQGLECS 451
                 469*****************************765111445555555555555555555 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 0.00026
   TIGR02373   8 edientlakmgd.ae.ldalafGaiqldesGrilkynkaegelaGrdPekviGknffke 64 
                 +di + +a++++  + +d+       +d++G+++ +nk+ ++++G + e+ +G+++ ++
  MMETSP1174-20130828|9060_1 489 QDITERMAQEQEfVRlIDTANAPIFGVDKNGKVTVWNKSASNVTGYTVEDTMGHHLVQD 547
                 577777776664223145555556679**************************999887 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0041       3.3     152     274 ..     156     280 ..     142     285 .. 0.66
   2 !   23.2   0.0   8.2e-09   6.7e-06     159     367 ..     283     497 ..     271     508 .. 0.78
   3 !   18.8   0.1   1.8e-07   0.00015     132     303 ..     378     550 ..     378     561 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0041
   TIGR02040 152 stgrileansaAaalLgaegqslvGrelaqeleerereeleellrevra.tgkaaevrielaesake.llvvvslfrqdseslfLvrlspvgasaavedvlsenlaklveeapDaivvvDadGri 274
                  +g +   n+  a++L +  ++ vG++++q + + ++e  ++ l + +      ++ + el+ +++  ++++ s++    e+  +  l   g++ ++ ++ +++l +++++    +  +D dG +
  MMETSP1174-20130828|9060_1 156 LDGTVQYCNQHMARVLRVDPRDAVGQNFTQIFLGDDAETTMKKLMQSAHeSVTESDLECELTTVTGAvVKILLSTMLVRDEEGKVEGLILSGRDVPIPTIDENALFRILKSVGVPVFGTDNDGIV 280
                 46677778999999***************999999999877766665540344456677777766541456666665555555555555556666666666666666666666666666666665 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 8.2e-09
   TIGR02040 159 ansaAaalLgaegqslvGrelaqe.leerereeleellrevratgkaaevrielaesakellvv...vslfrqdseslfLvrlspvgasaavedvlsenlaklveeapDaivvvDadGriksaneaFlelvevsskeavrGrtldrwlg.RsgvDLavllsnlrrdgqvrLyattlkgelgaetevEisAaavdqgerpklvl..viRdisRrltr 367
                  n  A +lLg ++ +++G+++++  ++ ++r +++  +++  +  + ++    l+ +++   v      + r ds+ + L  +   +++++++ ++ +++a+l+++a   i  vD dG+++  n+a  +l+  s +e +  + +++++    +  ++ +l+   +  +   +  tl+++ ga +++ + A+   + + + +++  +  di+ r+++
  MMETSP1174-20130828|9060_1 283 WNDGAERLLGYTEAEILGQNMLKVlVPPKHRASVQAFINRALEGIEVEKFAFPLQTKEGAQVVEipfNTTSRRDSKGRILGLIGIGDETTPINAQE-HEYARLLDTANAPIFGVDEDGKVNVWNKAAFKLTGYSPEEIMSHNFVSNFVRvEHSTSVQEVLDKALQGLECSNLQITLNTKSGAWVNILLNATSRRDVNGRVVGVlgIAQDITERMAQ 497
                 3899***************9987637999******9999988777888877777666555555411145667888888877666666666666555.777***************************************99******952456777778888888888999999999999999999999999988888877652234677766664 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 1.8e-07
   TIGR02040 132 EtRYRlllevsseavllvdvstgrileansaAaalLgaegqslvGrelaqelee.rereeleellrevratgkaaevrielaesakell..vvvslfrqdseslfLvrlspvgasaavedvlsenlaklveeapDaivvvDadGriksaneaFlelvevsskeavrGrtldrwlg 303
                 E  Y +ll+ ++ ++  vd+ +g++   n+aA +l g + ++++  ++  ++   ++  +++e+l +  +  + ++ +i+l+ + + +   ++  + r d + + +v +  + ++++   ++++++ +l+++a   i  vD +G++   n+   +++  + ++ +  + ++++++
  MMETSP1174-20130828|9060_1 378 EHEYARLLDTANAPIFGVDE-DGKVNVWNKAAFKLTGYSPEEIMSHNFVSNFVRvEHSTSVQEVLDKALQGLECSNLQITLNTKSGAWVniLLNATSRRDVNGR-VVGVLGIAQDITERMAQEQEFVRLIDTANAPIFGVDKNGKVTVWNKSASNVTGYTVEDTMGHHLVQDFIS 550
                 66799*************97.899*99*********************99976515667899999999988899******999888774325566666666665.56666777888888888899***************************99999999998887777777775 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0008      0.66      19      70 ..     151     202 ..     138     250 .. 0.73
   2 !    5.2   0.0    0.0023       1.9      12      65 ..     264     317 ..     256     343 .. 0.85
   3 !    4.9   0.0    0.0029       2.4       5     107 ..     378     494 ..     374     503 .. 0.69
   4 !    9.3   0.0   0.00014      0.11       4      66 ..     497     559 ..     494     569 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0008
   TIGR02966  19 vvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelkeylaekkae 70 
                 v+ l  +++++++N+   ++l ++ ++ +gq+ ++++   + + ++++ +++
  MMETSP1174-20130828|9060_1 151 VLELALDGTVQYCNQHMARVLRVDPRDAVGQNFTQIFLGDDAETTMKKLMQS 202
                 45567789******************9********99877776666654443 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0023
   TIGR02966  12 lealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelkeyla 65 
                 l+ +  +v+ +d+++ ++++N+ ae+llg +  + lgq++ +++  p+ ++ ++
  MMETSP1174-20130828|9060_1 264 LKSVGVPVFGTDNDGIVNLWNDGAERLLGYTEAEILGQNMLKVLVPPKHRASVQ 317
                 666777888999*********************99*******998888766555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0029
   TIGR02966   5 lerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqk.isnlir...spelkeylaekkaeep...lelksplneervlevrivpygeee.......lllvarDvtkl 107
                  +++++ l++ + +++ +de+++++ +Nkaa kl g + ++ ++++ +sn++r   s++++e+l++  ++ +   l+++ ++++ + +++ + + ++++       +l +a+D+t+ 
  MMETSP1174-20130828|9060_1 378 EHEYARLLDTANAPIFGVDEDGKVNVWNKAAFKLTGYSPEEIMSHNfVSNFVRvehSTSVQEVLDKALQGLEcsnLQITLNTKSGAWVNILLNATSRRDvngrvvgVLGIAQDITER 494
                 55666777888899999*******************987776654425666662114457777777766433344677777777777777766666666778788788888888874 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00014
   TIGR02966   4 elerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelkeylae 66 
                 + +++ + +++ + +++ +d++++++ +Nk+a+++ g ++++ +g+++ + + sp+++  ++e
  MMETSP1174-20130828|9060_1 497 QEQEFVRLIDTANAPIFGVDKNGKVTVWNKSASNVTGYTVEDTMGHHLVQDFISPDFRTSVQE 559
                 556777888899999******************************************988876 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.028        23      20      48 ..     274     302 ..     262     314 .. 0.83
   2 !    8.4   0.1   0.00018      0.15      12     190 ..     387     560 ..     378     570 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.028
   TIGR02938  20 tdlkanilyanaafseitGyakeeviGkn 48 
                 td+   +   n+  +++ Gy++ e++G+n
  MMETSP1174-20130828|9060_1 274 TDNDGIVNLWNDGAERLLGYTEAEILGQN 302
                 666666667799999*************9 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00018
   TIGR02938  12 qapvaisitdlkanilyanaafseitGyakeeviGkne.svlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqkllieavvdaaPvalvlldeqgrvvldnleykklasdlkveepaesll.kllreelaealeel 190
                  a+  i   d+   +   n+a  ++tGy++ee++ +n  s +        v   l ++l   +  + ++    k g      l  +   +  G  +  lG+ +d+te    eq+       +  ++d+a + +  +d++g+v + n++  +++   +++   + l+ + + ++++ +++e+
  MMETSP1174-20130828|9060_1 387 TANAPIFGVDEDGKVNVWNKAAFKLTGYSPEEIMSHNFvSNFVRVEHSTSVQEVLDKALQGLECSNLQITLNTKSGAWVNILLNATSRRDVNGRVVGVLGIAQDITERMAQEQEF------V-RLIDTANAPIFGVDKNGKVTVWNKSASNVTGYTVEDTMGHHLVqDFISPDFRTSVQEV 560
                 5555555556666666678888899*********999424444444555666677777777777777776677777777777888888889999999999999999876555443......2.2455666666778999999888888888777777777666655145566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.61
# Mc/sec: 1237.67
//
Query:       MMETSP1174-20130828|9066_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 731.60
//
Query:       MMETSP1174-20130828|9065_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 863.01
//
Query:       MMETSP1174-20130828|9063_1  [L=778]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-18   63.8   0.0    2.2e-13   46.8   0.0    3.0  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    6.2e-11   39.0   3.3     0.0015   14.6   0.0    4.3  4  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    1.2e-10   39.1   0.0    0.00015   19.3   0.0    4.5  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.9e-10   36.9   0.0    7.4e-07   26.8   0.0    4.0  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00021   17.9   0.1     0.0088   12.5   0.0    2.8  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.16   1.3e+02     509     547 ..     204     242 ..     199     244 .. 0.84
   2 !   46.8   0.0   2.7e-16   2.2e-13     457     625 ..     254     424 ..     240     424 .. 0.93
   3 !   23.7   0.0   2.6e-09   2.2e-06     461     605 ..     362     508 ..     358     531 .. 0.87
   4 ?   -1.7   0.0      0.12     1e+02     171     337 ..     632     662 ..     623     685 .. 0.52

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.16
   TIGR02917 509 dlqekniddAkqrfekvlaidpknlkallaLaelaarkg 547
                 + ++++++++ + ++++l   p + ++ + L++la+ +g
  MMETSP1174-20130828|9063_1 204 ADKAGRLQQSEDTLKRLLELTPLDGRVWRRLSRLAKDRG 242
                 557899999999999999999999999999999998776 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 2.7e-16
   TIGR02917 457 lekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaq..yylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfk 625
                  ++k p n  l+  l+     k+d++ Are f  AL+i+p  ++  ++  r++ + +n++ A + +e+ ++ +p+n ++l a++ l+ + g+ e+a+all        ++  p l+ ++  +++++ ++  a +il ++ +++p+  + ++ l+r+  + +++++ +e +k
  MMETSP1174-20130828|9063_1 254 GLAKLPLNEYLWASLAELDKVKGDYDSAREHFARALEIDPRMVAIYHSWGRMESKCGNLETANELLERGITLSPTNSRMLMAMSILQDQFGKREAALALLDYGLSVFGQDDHPHLLHSRaiHFVKHAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYK 424
                 567777788888999999999**********************************************************************************999999999999876633789999***********************************999998886 PP

  == domain 3    score: 23.7 bits;  conditional E-value: 2.6e-09
   TIGR02917 461 qpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaid..pknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspelle 605
                 q+d + l + +++  ++  + ++Are +    +  p f ++  +LArl+++ +n+d++++ ++ +  ++   +++++ +  a+++ + +n + a+++++ a+ + pk+++  ++ a      g+  ka +i  + +   p sp +++
  MMETSP1174-20130828|9063_1 362 QDDHPHLLHSRAIHFVKHAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYKTACFRKgkTHSVELWQSWASMEVQANNLAGAAEVYTGAYVRFPKDVNIGVQWAIIEHLLGDSFKAKEIMAQTVRSSPTSPWAYL 508
                 89**************************************************************997652267899*******************************9998888777777778888888888888888888877665 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.12
   TIGR02917 171 aenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAa 337
                 a                                                                                                                                        +g+l +A++y+ + ++   +++ A +l A+
  MMETSP1174-20130828|9063_1 632 A----------------------------------------------------------------------------------------------------------------------------------------QGNLVTAQNYIARSIQGNNQDPMAWKLWAS 662
                 4........................................................................................................................................455555555555555555555555555443 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   9.8e-05      0.08     407     452 ..     206     251 ..     194     258 .. 0.88
   2 !   14.6   0.0   1.8e-06    0.0015     410     495 ..     243     328 ..     242     334 .. 0.90
   3 !   12.3   0.0     9e-06    0.0074     383     495 ..     355     468 ..     339     476 .. 0.83
   4 !    2.3   0.1    0.0099       8.1     424     455 ..     615     646 ..     584     682 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.8e-05
   TIGR03939 407 ysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqll 452
                  +g+l++ e++l++ll+ +P ++ ++ +l+ +++ Rg    Ae + 
  MMETSP1174-20130828|9063_1 206 KAGRLQQSEDTLKRLLELTPLDGRVWRRLSRLAKDRGDLFLAEGYI 251
                 579***********************************99999765 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.8e-06
   TIGR03939 410 dlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPe 495
                 dl  Ae  + + la+ P N++l++ lae+ +++g  + A + + +a  ++p+ +  +++ + +  + ++ ++a++l++   + +P 
  MMETSP1174-20130828|9063_1 243 DLFLAEGYIYRGLAKLPLNEYLWASLAELDKVKGDYDSAREHFARALEIDPRMVAIYHSWGRMESKCGNLETANELLERGITLSPT 328
                 6666777888888999***********************************************************99988877776 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 9e-06
   TIGR03939 383 fgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlq..ewrqaealiddlvaryPe 495
                 +g s+    dd+  +  +++ + + + ++seA + l  l++t P  +  +l la +e+  g+ +++ +l+k a   + ++ s+e  q ++ +++q  + ++a ++ +    r+P+
  MMETSP1174-20130828|9063_1 355 YGLSVFG-QDDHPHLLHSRAIHFVKHAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYKTACFRKGKTHSVELWQSWASMEVQanNLAGAAEVYTGAYVRFPK 468
                 5555544.38999************************************************************999999999999998888886522666666666655555565 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.0099
   TIGR03939 424 tAPgNqslrlalaeveraRgwprrAeqllkka 455
                   P +++++l  a+ e+a+g+  +A+++  + 
  MMETSP1174-20130828|9063_1 615 ASPVDPWIWLYFASFEKAQGNLVTAQNYIARS 646
                 45999999999999999999999999887665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.8e-07   0.00015      49     120 ..     259     330 ..     251     338 .. 0.93
   2 !    5.3   0.0    0.0038       3.2      21      84 ..     369     432 ..     358     438 .. 0.90
   3 !    7.7   0.0   0.00072      0.59      51     123 ..     435     506 ..     412     514 .. 0.87
   4 ?    0.7   0.0       0.1        85      93     122 ..     572     601 ..     566     606 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.8e-07
   TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 p +++ w++La+  + +++y+ A++ +a+a+ +d+   + +   +    ++g+ e A++ L++ i ++  ++
  MMETSP1174-20130828|9063_1 259 PLNEYLWASLAELDKVKGDYDSAREHFARALEIDPRMVAIYHSWGRMESKCGNLETANELLERGITLSPTNS 330
                 568889*********************************************************999998776 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0038
   TIGR02552  21 iYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldld 84 
                 +++ A +++++ + +eA+++   L+   p  +  wl+La      ++ +  ++ Y+ a + + +
  MMETSP1174-20130828|9063_1 369 LHSRAIHFVKHAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYKTACFRKGK 432
                 789999**************************************************99876655 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00072
   TIGR02552  51 eakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                 + + w ++a+   ++++ ++A++ Y+ a+   ++d +  ++ a+   +lg+  +A++ ++ +++ +  ++ ++
  MMETSP1174-20130828|9063_1 435 SVELWQSWASMEVQANNLAGAAEVYTGAYVRFPKDVNIGVQWAIIEHLLGDSFKAKEIMAQTVRSSPTSP-WA 506
                 567899******************************************************9999988777.55 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.1
   TIGR02552  93 aecllalgekeeAlkaLklaieiaeekeey 122
                 a+   +l+ + +A++ + lai++a +k++ 
  MMETSP1174-20130828|9063_1 572 AIMEWQLEAPLRARQLFSLAIRLASSKSQL 601
                 5667789999999********999998865 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        12     144     194 ..     203     253 ..     188     266 .. 0.88
   2 !   26.8   0.0     9e-10   7.4e-07      44     194 ..     275     425 ..     273     459 .. 0.92
   3 ?    0.3   0.0      0.11        88     148     192 ..     483     527 ..     475     534 .. 0.86
   4 ?   -0.8   0.0      0.25     2e+02     147     172 ..     632     657 ..     623     681 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.014
   TIGR02521 144 calkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                 +a kag+ ++ e +l+r+l++ p   +  + l +l  ++g++  A+ ++ r
  MMETSP1174-20130828|9063_1 203 TADKAGRLQQSEDTLKRLLELTPLDGRVWRRLSRLAKDRGDLFLAEGYIYR 253
                 677999**********************************99999998876 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 9e-10
   TIGR02521  44 qgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                 +gd+++A+e    Ale+dp     +++ + +  + g+le A+e  ++++tl+p n ++l        q +k e A + ++  ++    +   + + + ++ + k  +t +a++ l  +++  p+   s l+la+l+ + g++ + r+l++ 
  MMETSP1174-20130828|9063_1 275 KGDYDSAREHFARALEIDPRMVAIYHSWGRMESKCGNLETANELLERGITLSPTNSRMLMAMSILQDQFGKREAALALLDYGLSVFGQDDHPHLLHSRAIHFVKHAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYKT 425
                 69*********************************************************99988777778****************************************************************************99986 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.11
   TIGR02521 148 agdtekaekyltralkidpkrpesllelaelklkkgqyaeArall 192
                 +gd  ka++ + + ++  p++p + l+ a l+++  ++ +Ar l+
  MMETSP1174-20130828|9063_1 483 LGDSFKAKEIMAQTVRSSPTSPWAYLNAAILEFELNRVSSARGLF 527
                 577889999999999999999999999999999999999999765 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.25
   TIGR02521 147 kagdtekaekyltralkidpkrpesl 172
                 ++g+   a++y+ r+++ + + p + 
  MMETSP1174-20130828|9063_1 632 AQGNLVTAQNYIARSIQGNNQDPMAW 657
                 34555555555555555555555443 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.8      0.26   2.1e+02      63     130 ..     127     197 ..     119     204 .. 0.71
   2 !   12.5   0.0   1.1e-05    0.0088     349     459 ..     212     322 ..     200     342 .. 0.88
   3 ?    0.8   0.0     0.038        32     341     459 ..     375     496 ..     366     524 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.26
   TIGR00990  63 keskpklskkerrkrkdaekeaek..kaeekkstapkaaa.vesadelpeidessvvnlseeerkkyaakl 130
                 +   p    + r  + d++k++e+      +k++  +++  v        +d++ + ++see +k+   kl
  MMETSP1174-20130828|9063_1 127 RSDSPAAVNNTRSRTSDTQKDTEElkLKLSRKPEYRREPDwVIKERIDTTPDKEGKTQYSEETKKRLVSKL 197
                 45566667778889999999999863234566666666652444455678999***********9988877 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR00990 349 ealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrra 459
                 ++ + l++ +el P   + + + + +  ++gd   ae +  + l+k + +  ++   a l+ +kg+++ a   + ++ ++dp  +  y   + ++ k g+++ ++ l+ r 
  MMETSP1174-20130828|9063_1 212 QSEDTLKRLLELTPLDGRVWRRLSRLAKDRGDLFLAEGYIYRGLAKLPLNEYLWASLAELDKVKGDYDSAREHFARALEIDPRMVAIYHSWGRMESKCGNLETANELLERG 322
                 55566888999999999999999999999****9*************************************************9999999999999999988887777665 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.038
   TIGR00990 341 kflk.gkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdi..yyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrra 459
                 +f+k  +  ea + l    e +Pr++ s++  a +  + g+ d   e ++ a  ++ +  ++  +   a ++   ++ a aa  y  +    p+ +   +q a++++ lg   +++ ++ ++
  MMETSP1174-20130828|9063_1 375 HFVKhAQTSEAREILVSLTETHPRFEASWLSLARLEENSGNVDASRELYKTACFRKGKTHSVelWQSWASMEVQANNLAGAAEVYTGAYVRFPKDVNIGVQWAIIEHLLGDSFKAKEIMAQT 496
                 44441456788888888889999999999999999999999999999999987666555544115566778888888888877777766666666666666666666555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.19s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2013.48
//
Query:       MMETSP1174-20130828|9068_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|9067_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1174-20130828|9062_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|9075_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 928.05
//
Query:       MMETSP1174-20130828|9073_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 856.24
//
Query:       MMETSP1174-20130828|9077_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 227.57
//
Query:       MMETSP1174-20130828|9074_1  [L=1542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.9    3.8  15.9          1    5.7   1.9    2.4  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.9   0.00025         1     143     298 ..     328     480 ..     274     501 .. 0.52
   2 ?    3.3   3.7    0.0014       5.9     139     233 ..    1060    1153 ..    1046    1193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00025
   TIGR00437 143 ieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleg.lleeraleiekiekelaevvkkesesklsateiadeekvlveksigtkvld.rflglliilsvvfllllltflvgealsdlletvfealseavksaianea 298
                 i++l+++i+   + k+++k++ +++  +  e+  + + +l    q  k   + +   +++e  +++++++ke+ e+  + +e   + +e++ e + l ek  ++k+ +     l++ + ++f  l +     ++l + + t+++++   +k  +++e+
  MMETSP1174-20130828|9074_1 328 IKSLEQNIS---NRKRMKKRRSLQKKKNREEKKPADRRELRASVQ--KLVSQLVDIkVAKEANKAAKESNKEASELEVNLDEATEKLAELCAEVEPLKEKIGDIKAFElDSGSLPTWMRLMFYELIVHGASPGNLDAYIRTIVGHVVPFLKVKLPDEK 480
                 111112221...112222222222222222222222222222222..222222222022222222223333333333333333333333333334444444444444467788999999999999999999999999999999999888887776665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0014
   TIGR00437  139 kgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiekelaevvkkesesklsateiad 233 
                    +++e+l   i+ +k+ k++++++++ie+++ +++ ++++  ++++++ l +++ ++ + +l  ++ ++e+ ++++a +++ + e+k+ +   ++
  MMETSP1174-20130828|9074_1 1060 TEKQLEALVTMIR-KKRDKYLKQDRDLIEEQRRLRKERALEA-AEKIEKLLeERMVKAWQLVLTTKVDTCEELKTTVARLLEESRENKKIKHTETK 1153
                  4567888888888.99********************999986.56666666799999999999999999999999999998877665443332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.18s 00:00:01.25 Elapsed: 00:00:00.61
# Mc/sec: 3336.51
//
Query:       MMETSP1174-20130828|9081_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-29   99.5   0.0    1.5e-16   58.2   0.0    3.6  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   3.7e-20   1.5e-16       3     101 ..      26     130 ..      24     152 .. 0.81
   2 ?   -0.8   0.0     0.028   1.1e+02     176     196 ..     218     238 ..     207     255 .. 0.75
   3 !   35.4   0.0   2.8e-13   1.2e-09     261     422 ..     278     466 ..     269     493 .. 0.71

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 3.7e-20
   TIGR03417   3 pnililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaae.......fasdiptyahylraaGyktalsGkm 101
                 pnil +m d l    l+ yg+ +   +Pnl++la+++++f+  y+ +P+caP+r +l++G    +  +  n a+       ++ + +t a  l+ aGy tal Gk 
  MMETSP1174-20130828|9081_1  26 PNILWIMSDDLGYGELSSYGQ-RNFSTPNLDQLAKEGIRFKYGYAGAPVCAPSRCALMTGLHLGHAYIRGNNANadgtdmaLRESDMTVAQLLQDAGYFTALVGKW 130
                 9********************.8889**********************************654443333333221122222456678*****************95 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.028
   TIGR03417 176 larekdarPfcltvslthPhd 196
                  a   d++Pf l  s t Ph 
  MMETSP1174-20130828|9081_1 218 RAEAVDNKPFFLYLSWTDPHA 238
                 555678888888888888884 PP

  == domain 3    score: 35.4 bits;  conditional E-value: 2.8e-13
   TIGR03417 261 yvddkiGellevleetrladdtivvfvsdhG.......dmlGerGlwy..........kmsffegsarvPllvaaperleagrvea.avstvdllPtlvelagv.eleevlp.aldGeslvpllkgk..erkde.vlgeylaegsi...aPlvalrrGkykfvk.ceadPeqlydleadPkelenlaee 422
                 + d ++G +l++l++ ++++ t++ f+sd G       d +G +   +          k s +eg+ r P ++  p+   ag +++ +    d lPt  ++a+  +l  +l   +dG s++p+l+g+  +r+d+ +  e+ + g     a l    +G +k v+ ++++   ly+l++dP e  +++++
  MMETSP1174-20130828|9081_1 278 FQDRDVGRILSTLDRLGFSNSTVIFFASDNGasneggsDAFGFHDYKFfdssgglrgcKRSLYEGGIRTPAIIRWPGVAPAGVTSDfPWYFPDFLPTALAIAQRyDLVDQLDvPVDGISILPTLRGQaqKRTDQcMYFEFCTSGLWgqaAVLHESDKGYFKAVRlSSQEVFELYELKTDPSESVDVSAS 466
                 66999************************995544444455533222223333333338899***************666655544366788*********9852554444458*********9886214455514568888875511045555567889987536788899***********998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1565.01
//
Query:       MMETSP1174-20130828|9085_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|9091_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|9089_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 840.33
//
Query:       MMETSP1174-20130828|9092_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|9087_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1278.21
//
Query:       MMETSP1174-20130828|9097_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 425.66
//
Query:       MMETSP1174-20130828|9101_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|9102_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|9103_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   10.7  26.0      0.072   10.1  18.1    1.2  1  TIGR02794 tolA_full: protein TolA
      0.063   10.3   3.4      0.079   10.0   2.4    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
        1.2    5.3  16.5        1.8    4.8  11.4    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
        1.9    5.3  11.4        2.6    4.9   7.9    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
          3    6.4  12.2        3.8    6.0   6.1    2.7  2  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  18.1   8.8e-05     0.072     106     173 ..     116     171 ..      69     176 .. 0.47

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8.8e-05
   TIGR02794 106 aaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaea 173
                 +         ++++e e+k++q e++k  +aaE+++++ea +     a++ A+k aE e+ka+++aea
  MMETSP1174-20130828|9103_1 116 K-------DKKRDREREKKRRQRERKKVEKAAERQRQEEASR-----AAAVAEKAAERERKAREEAEA 171
                 1.......2222222222233333333333333333333321.....222233333333333333333 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.4   9.6e-05     0.079     128     194 ..     112     178 ..      57     198 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 9.6e-05
   TIGR01347 128 leavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvkmtRlrqriaerLlea 194
                 +e+++++k++ +  k+  +++++k ++aa+++ +++a++a+++a++  eR++ +R  +++a+r+ ++
  MMETSP1174-20130828|9103_1 112 TEELKDKKRDREREKKRRQRERKKVEKAAERQRQEEASRAAAVAEKAAERERKAREEAEAADRVCHS 178
                 3444443333333333333333333555666666666667777899999999999999999998776 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.4    0.0022       1.8       2      79 ..     117     170 ..     110     180 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0022
   TIGR01642   2 DkekdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrir 79 
                 Dk +drerEk+r                         +r+r++  +  +R+R++   +     +   + +r++R++ +
  MMETSP1174-20130828|9103_1 117 DKKRDREREKKR------------------------RQRERKKVEKAAERQRQEEASRAAAVAEKAAERERKAREEAE 170
                 223333332222........................112233334444444444444444444444444555554443 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.9    0.0032       2.6       8      78 ..     100     170 ..      87     182 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0032
   TIGR01554   8 laelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeea 78 
                 ++  a+e+ +  ++e +++ +++++ek+  + e +k+e++ er+++++a+++a+ a++  +++ +++ee++
  MMETSP1174-20130828|9103_1 100 WDWTAAEVPEPLTEELKDKKRDREREKKRRQRERKKVEKAAERQRQEEASRAAAVAEKAAERERKAREEAE 170
                 55555555544444444444444444444556666666666666555444444444444443333333332 PP

>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   1.5e+03      11      25 ..      21      35 ..      14      49 .. 0.56
   2 ?    6.0   6.1    0.0047       3.8       9      57 ..     150     201 ..     112     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 1.9
   TIGR02419 11 eelleaalaaarakk 25
                + ++e  l a+ ++k
  MMETSP1174-20130828|9103_1 21 QHQREVDLDARHDQK 35
                333455555555555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0047
   TIGR02419   9 leeelleaalaaarakkrveaasllvCeeCgepI...PeaRrealPgvtrCv 57 
                 ++++  e+a +++r++++   a+ +vC+ Cg  I   P +R+e+    t Cv
  MMETSP1174-20130828|9103_1 150 RAAAVAEKAAERERKAREEAEAADRVCHSCGGGIvgtPFTRLEFRYCSTGCV 201
                 333334445555555553555668********99888889999888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       409  (0.0997075); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 760.67
//
Query:       MMETSP1174-20130828|9107_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 251.60
//
Query:       MMETSP1174-20130828|9105_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 590.28
//
Query:       MMETSP1174-20130828|9104_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1305.23
//
Query:       MMETSP1174-20130828|9106_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-49  166.7  26.0    1.9e-49  166.4  18.0    1.0  1  TIGR00797 matE: MATE efflux family protein
    0.00038   17.1   2.9     0.0039   13.8   0.3    2.4  2  TIGR02900 spore_V_B: stage V sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4  18.0   9.3e-53   1.9e-49       1     396 []      71     468 ..      71     468 .. 0.95

  Alignments for each domain:
  == domain 1    score: 166.4 bits;  conditional E-value: 9.3e-53
   TIGR00797   1 PailaniaqpllslvDtafvGhlgpveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmg.....adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilif.kfg....lGivGaAlAtvisqylmflllllyilkakkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkglw 396
                 Pail   + +l++++D  ++G+lg+ve+ a g +s++ +++ i+    ++++ ++ + + Ga +++ ++ ++ q+l+  + ++++va+ + ++ +p ++++g        ++++++++Ylr l  g++    s ++   ++G+g+  +pl++t  ++  n +Ld+ili    g    +G++GaA+At +s+ l+++llll++   ++v +++     p+  +l+r+  +g p++l  +l s+++++l  + + +   +l a +++ ++e+++f++   +a+A+ +lvGq lG g+  +a++va  a+ l +  ++ la++ ++f+  +  lft+ p+v ++a+++l +va++ p+ a+ ++ +G+l Ga dt ++++   +++ ++++pl+fl++   ++gl g+w
  MMETSP1174-20130828|9106_1  71 PAILIGCLRNLYGITDAYWIGRLGAVEVEAMGAASFAGWMVLIMGELAAVGVHTMASGQEGANRRDLVGKTVVQGLWASIAISAIVAAAIPLC-DPYFAMLGlgdagPAAAIRSVGRDYLRWLCSGAFPLIASGVAAAGFKGIGQMGAPLLVTAGSVAFNSVLDPILIWgIPGfipaMGVAGAAIATNVSSALALVLLLLLLN-RNRVPIRW---APPSAPTLRRIASIGSPMALSGMLYSAVYIALGRIITAIPGGSLGALGIGHRLENIAFTINEAFAVAAATLVGQWLGCGSRLEARRVAAHAVRLCIYSTTPLALTAFFFARPLVALFTSVPAVARAAVSYLRIVAVVFPVSAVETTYEGALTGAADTLPTLVC-GLVLNTSRIPLAFLFS--RRWGLDGIW 468
                 8999999*****************************************************************************999876555.56666666444435567999*******************************************************666699****************************.6******6...9**********************************999999********************************************************************************************************************988765.567899*********8..89****999 PP

>> TIGR02900  spore_V_B: stage V sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.1    0.0034         7     367     434 ..     202     274 ..     183     316 .. 0.69
   2 !   13.8   0.3   1.9e-06    0.0039     316     422 ..     369     477 ..     358     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0034
   TIGR02900 367 satlqsiLqgLgkqkvalrnsli....vaivkiillfvLts.ipslnilGaalaliitsvlvlvLnlaeikkk 434
                 s + ++ ++g+g+  + l  +       ++++ il++ + + ip +++ Gaa+a  ++s+l+lvL l  ++++
  MMETSP1174-20130828|9106_1 202 SGVAAAGFKGIGQMGAPLLVTAGsvafNSVLDPILIWGIPGfIPAMGVAGAAIATNVSSALALVLLLLLLNRN 274
                 5555555666666666655543311113445555555444337899999999999999999999988776654 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.9e-06
   TIGR02900 316 eqalkislllglitvvillviadelgkllykrddlg....efikvlalsvlflylsatlqsiLqgLgkqkvalrnslivaivkiillfvLtsipslnilGaalaliitsvl 422
                  +a+++++ ++++    ++ +a +l +l+ + + ++    ++++++a+++++  +++t ++ L g       l+  l+    +i l f++ ++   ++ G+ +a+ +t+v+
  MMETSP1174-20130828|9106_1 369 AHAVRLCIYSTTPLALTAFFFARPLVALFTSVPAVAraavSYLRIVAVVFPVSAVETTYEGALTGAADTLPTLVCGLVLNTSRIPLAFLFSRR--WGLDGIWVAISLTTVV 477
                 5799**************************99876633337***********************************************99955..5555655555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1682.86
//
Query:       MMETSP1174-20130828|9113_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|9114_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 231.87
//
Query:       MMETSP1174-20130828|9118_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-12   42.3   0.0    1.9e-08   31.9   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.5e-12   1.9e-08       3      35 .]       2      34 ..       1      34 [. 0.95
   2 !    9.1   0.0   8.1e-05      0.33       1      19 [.      35      53 ..      35      54 .] 0.92

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.5e-12
   TIGR00756  3 yntlisglckagrveeAlelfdeMkergivPda 35
                +++ +s++ k g++e+Al+l+deM+ + i+P++
  MMETSP1174-20130828|9118_1  2 FSAAMSACQKGGQWEKALQLLDEMRQHEIEPNV 34
                6788***************************96 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.1e-05
   TIGR00756  1 vtyntlisglckagrveeA 19
                +++++ i+++ k g++++A
  MMETSP1174-20130828|9118_1 35 ISFSVAINACQKGGQWKKA 53
                589999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|9112_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-65  219.7   0.0    1.4e-64  216.1   0.0    2.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    7.9e-07   26.6   0.0    1.4e-06   25.8   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   0.0     7e-68   1.4e-64      42     424 ..     112     516 ..      82     524 .. 0.88

  Alignments for each domain:
  == domain 1    score: 216.1 bits;  conditional E-value: 7e-68
   TIGR01982  42 earkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk..pve.............elFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgep......ivgkplkei.........sigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkk 424
                   + +++g+ lr+ l++lGP+ +K+GQ+ls R+D+lpe++ e L+ Lq + +pf+ ++a +v++++++   p+              +lFa + ++ +A+AS++Qv++ ++++g e+a+Kv+RP   ++   d ++l l+ k +  ++ +++ l   ++v   +  + eEld+r Eaan++++++ +k   ++ vP    elt++r + +ew++g  ++dl   +++     +++    e + +  +  g+ HaD+H+GNi++a dg++++lDfG+++r++++ ++++a  ++ +l+++y+ +++  + +g+v s ++ ++ e++  +++ p      ++ k l+           ++g+l   l ++   +++ ++p ++LL++t+lt+EG++ q+dp++++++va p+  +
  MMETSP1174-20130828|9112_1 112 DDNGMDRGSVLRAELSALGPVSVKIGQTLSQRPDILPEDVCEALKGLQTSNAPFPDSEAFQVMAEDFEAkgPLApgimwpgcdpdapTLFAAMTSECIASASLGQVYRGTTHDGLEIAIKVQRPSALRQCLLDGSVLILALKAITGRFWNGDLLAIFDLV---AGGIVEELDFRNEAANCAKFGKSLKFLGYVDVPVTLPELTTRRAMAMEWVYGRHLTDLSPEEAM-----RMTYMSCEAVTAGLVLTGLVHADPHEGNIMLADDGRLVFLDFGLMSRVENDIQEAFASGIQCVLSKNYEGLVDAFMATGFVGSPIEWRAQESDPWQLTHPdgdprdVMAKELRRRmeacpgggsRFGALSVVLSDMGFFWQMYTPPYVILLIRTFLTLEGIAGQVDPEFNIYEVALPWAVQ 516
                 445689999********************************************************9987345559************99*************************************************9999999999899977777766...57899*****************************************************998887.....77777788888888899****************************************************************99999988888776666543332223333332211222333336888888888999999*************************************9765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.7e-10   1.4e-06      59     143 ..     301     388 ..     283     414 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.7e-10
   TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekelellkevGelv.gklHkagivhgDlttsNiiv.kddklyliDfGLgkk.skeve 143
                 v +Pv +   + +  + me + g++l dl  e+ ++++++  e+v + l  +g+vh D++  Ni++ +d++l+++DfGL ++ +++++
  MMETSP1174-20130828|9112_1 301 VDVPVTLPELTTRRAMAMEWVYGRHLTDLSPEEAMRMTYMSCEAVtAGLVLTGLVHADPHEGNIMLaDDGRLVFLDFGLMSRvENDIQ 388
                 778888888888899*****************998666666555427799***************955889*******9665244432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.69
# Mc/sec: 1553.26
//
Query:       MMETSP1174-20130828|9117_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.5   6.6    0.00041   17.5   4.6    1.8  2  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.19    8.9   9.9      0.015   12.5   1.6    2.1  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.8      0.26   5.3e+02      48      67 ..      25      42 ..      20      98 .. 0.78
   2 !   17.5   4.6     2e-07   0.00041      26      69 ..     100     145 ..      90     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.26
   TIGR00599 48 FCslCiRrcLseepkCPlCr 67
                FC+lC  ++ ++  +C  Cr
  MMETSP1174-20130828|9117_1 25 FCALCESKYANK--RCSNCR 42
                888887777654..566665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 2e-07
   TIGR00599  26 slRChvCkdffkaPvltsCsHtFCslCiRrcLse..epkCPlCrae 69 
                 +l C +C    ++Pv  +C+H FC +C+    s   +  CPlCr +
  MMETSP1174-20130828|9117_1 100 TLMCSICLGSPESPVKLPCNHEFCRVCVDALRSRglKQLCPLCRKP 145
                 588*************************76555422567*****75 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9     0.035        71     128     212 ..      10      95 ..       4     116 .. 0.76
   2 ?   12.5   1.6   7.2e-06     0.015      26      53 ..     118     146 ..     101     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.035
   TIGR00570 128 enkeviqknkekltreqeeleealelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldva.eliaehkeksvklekev 212
                 + ke i+knk+  t+  +  e +    + ++ + r     + ++ + kk  +kq+  + L+t+ ++++   +++ +++ +k  +++
  MMETSP1174-20130828|9117_1  10 KIKEKIKKNKNDPTNFCALCESKYANKRCSNCRERWYCSVECQTLHWKKGGHKQECRESLQTAANQAQsDRMTNLTDRGEKEVEHS 95 
                 55899999999888877777777777777777777777777788888999999999999999876654156677777766665554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 7.2e-06
   TIGR00570  26 CghtlCesCvdllfvrGsgs.CpeCdtpL 53 
                 C h +C  Cvd l +rG  + Cp C +pL
  MMETSP1174-20130828|9117_1 118 CNHEFCRVCVDALRSRGLKQlCPLCRKPL 146
                 *****************8766******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1233.06
//
Query:       MMETSP1174-20130828|9116_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 1894.43
//
Query:       MMETSP1174-20130828|9123_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|9125_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.23s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 936.80
//
Query:       MMETSP1174-20130828|9127_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   65.1   0.5    2.1e-16   57.9   0.3    2.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.2e-05   22.2   0.1    1.5e-05   21.8   0.0    1.4  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    8.3e-05   19.8   0.0    0.00027   18.1   0.0    1.7  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.3   1.5e-19   2.1e-16       4      85 ..       1      98 [.       1     110 [. 0.82

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 1.5e-19
   TIGR01349  4 mPaLsPtmeeGnlakwkkkeGDkvkeGdviaeiet.........D......kAtldvesqeegylakilvp.egtkdvpvnkliavlveekedvedav 85
                mP+LsPtm +G + kw k++GD+v+  d++ e+ t         D      +  l+vesq+e+++a++lv+ +g  dv ++++ia+lve++ d+eda+
  MMETSP1174-20130828|9127_1  1 MPQLSPTMAHGRVRKWLKQNGDRVECHDLLFEVTTrellmddegDdecgqkRMNLQVESQDEAFIARLLVDdDGIADVAIGEPIAILVEDECDIEDAA 98
                9********************************995445543331233322345678999**********73689********************986 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-08   1.5e-05       7      42 ..       1      36 [.       1     112 [. 0.82

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.1e-08
   TIGR02927  7 mpalGesvteGtvtrwlkavGdtvevdepllevstd 42
                mp+l  +++ G v +wlk+ Gd ve  + l+ev+t 
  MMETSP1174-20130828|9127_1  1 MPQLSPTMAHGRVRKWLKQNGDRVECHDLLFEVTTR 36
                788888888888888888888888888888888875 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-07   0.00027       6      76 ..       2      89 ..       1     113 [. 0.64

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2e-07
   TIGR01347  6 PelaesvteatvaewekkvGdavkkdelivelet.........D......kvslevaseadGvleellekeg..dtvesgevlaelee 76
                P+l+  ++ + v++w k+ Gd v++ +l+ e+ t         D      +++l+v+s+ +  +++ll++++  + v  ge +a+l e
  MMETSP1174-20130828|9127_1  2 PQLSPTMAHGRVRKWLKQNGDRVECHDLLFEVTTrellmddegDdecgqkRMNLQVESQDEAFIARLLVDDDgiADVAIGEPIAILVE 89
                99999************************99988333332222122333235566666666666665555441223555566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 423.04
//
Query:       MMETSP1174-20130828|9129_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1174-20130828|9132_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|9131_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 778.04
//
Query:       MMETSP1174-20130828|9130_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.81
# Mc/sec: 594.77
//
Query:       MMETSP1174-20130828|9135_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 864.32
//
Query:       MMETSP1174-20130828|9136_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1174-20130828|9137_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1297.13
//
Query:       MMETSP1174-20130828|9142_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 353.26
//
Query:       MMETSP1174-20130828|9144_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|9143_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 221.55
//
Query:       MMETSP1174-20130828|9146_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-44  149.4   0.0    5.9e-43  145.2   0.0    2.0  1  TIGR02730 carot_isom: carotene isomerase
      1e-18   65.2   0.0    3.2e-18   63.5   0.0    1.7  1  TIGR02734 crtI_fam: phytoene desaturase
      7e-15   52.5   0.0    2.9e-13   47.1   0.0    2.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    0.00068   16.3   0.1    0.00091   15.9   0.0    1.2  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0074   12.9   0.0       0.01   12.4   0.0    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
  ------ inclusion threshold ------
      0.048   10.2   0.0       0.15    8.6   0.0    1.7  2  TIGR02731 phytoene_desat: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   8.6e-46   5.9e-43     179     488 ..      55     406 ..      42     409 .. 0.80

  Alignments for each domain:
  == domain 1    score: 145.2 bits;  conditional E-value: 8.6e-46
   TIGR02730 179 yikdpellkfidiecfiwsvvpadltpminagmvlsdrhyggi..nypkggvgeiaeklvkglekaggkirykarvtkiilendkavgvklad...g.ekirakr.ivsnatrwdtfg............kllkeenlpkkekkfrkaykkspsflslhlgvkadllpegte....chhllledwen.lekeegtifvsiptlldpelapegyhiihtftpss..ledwegl.........spk..........dyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpiprrklkgllsmpfnrtaidglycvgdstfpgqglnavafsgfacahrv 488
                  i dp + +++d+ cf++   +++ +p    + +lsd +  g+  +ypk g   i   l +glek gg++r ++ v +i++e+++a gv +     g + ira+r +vsna    t +            +   ++ l k  +    + +++ sfl lhlg+ a  lp+++          ++ we+ ++ ++  ++vs+ +lld +lap+g h++h++ p++  +e+we +         s +          +y+  ke+ a+ l + +e+ +p + +  + + +gtp +h+r+l r+ gtyg        g + m   +t ++g+   gdstfpg g+ ava sg++ a  +
  MMETSP1174-20130828|9146_1  55 GITDPFIRNWLDMICFLLQGATTEAAPTSLMAYMLSDFYRDGVtlDYPKNGTKSIVGALLRGLEKNGGELRLNSPVKRIVVEDGRAQGVVVQSkggGeRVIRARRaVVSNADLMTTRKivagsllpststQCAASDALVKYLDAQLARTERCDSFLHLHLGIDATGLPTEASeafpAQWASIDSWERgVDAPRNLVLVSMASLLDKSLAPDGCHVLHAYVPATepFESWEKFikstdkdtgS-NvydedrynslEYREAKEEAAEVLWKAIERYIPDVRARTKVQRIGTPLTHKRYLRRDRGTYGAYLSAS-TGEVLMG-HKTPLPGFLLCGDSTFPGIGMPAVAASGLITANSI 406
                 58999999***********999999999999999***998886447****************************************9987643222335789987489999777776666676666665545555555555555556778899***************8765222245567888997578899**************************98643489998752222222111.0222222222369999**********************************************976655.4555565.5899*************************999876 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   4.7e-21   3.2e-18     206     489 ..      93     407 ..      53     415 .. 0.73

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 4.7e-21
   TIGR02734 206 leaGVw..fprGGtsalvealaklaedlggelrlnaeveeietegerataveled....gerlea.davvsnaDlvhtyk....kllreeerr........rksekklskkrlslslvvlyfGlkGvegelpqlaHHtllfgerykelieeifkkselaedf.slylvsp.tvtdpslAPegkeslyvLvPvphlga......................aadvdwskegerlrdrilaeleeralpdlrerivverlltPadfedelnaalGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvaklil 489
                 +++GV   +p+ Gt+ +v al +  e+ ggelrln++v++i +e++ra++v+ ++    ++ ++a +avvsnaDl++t k    +ll++++++        ++ +++l++ +   s + l++G++      + l+      +e++  + + i + ++  +++ +l+lvs+ +  d slAP g++ l+  vP+++                          ++++ +++ e++++ + +   er++pd+r+r +v+r+ tP ++++ l   +G+       l  s        +  + ++ l G  T PG+G+P v  S+ ++a+ i 
  MMETSP1174-20130828|9146_1  93 YRDGVTldYPKNGTKSIVGALLRGLEKNGGELRLNSPVKRIVVEDGRAQGVVVQSkgggERVIRArRAVVSNADLMTTRKivagSLLPSTSTQcaasdalvKYLDAQLARTERCDSFLHLHLGIDA-----TGLPT---EASEAFPAQWASIDSWERGVDAPrNLVLVSMaSLLDKSLAPDGCHVLHAYVPATEPFEswekfikstdkdtgsnvydedrYNSLEYREAKEEAAEVLWKA-IERYIPDVRARTKVQRIGTPLTHKRYLRRDRGTY---GAYLSASTGEVLMGHKTPLPGFLLCGDSTFPGIGMPAVAASGLITANSIV 407
                 56677555*************************************88887765542221456666369********998644446777665431111222256788999999999*999**99993.....33332...3466666666777775554555415666666688899****************954437899*************9888444455555555555555555.5678********************9887777763...345555555555556788***************************99886 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   4.2e-16   2.9e-13     233     490 ..     108     408 ..      33     410 .. 0.71

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 4.2e-16
   TIGR02733 233 vlsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvv.anlpaqsllelleeaalskgyrkrlkklpepsGalvlylavkkaal.pvdcpphlqflsdeqG............................slfvsvsk.egdgraPkGeatliass...........f...tdvdeWssl......eeedytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivGGlgqrlstfGpfglasrtPlkglWlvGdsiyPGeGtaGvsysalavvrqlla 490
                  +  +l+ +l+k+ggel l+  v++i +++++a+++vv+++    ++ ++a   v  n    +  +++       +   + +    +s alv yl  + a   + d+  hl +  d +G                             ++vs++   +   aP G++ l a +           f   td d+ s++      ++ +y++ k+e+++ + +++e+++   +++ + + ++tP t +ry  r++G  G         G   +  +tPl g+ l+Gds++PG G   v+ s l  ++ +++
  MMETSP1174-20130828|9146_1 108 SIVGALLRGLEKNGGELRLNSPVKRIVVEDGRAQGVVVQSK-GGGERVIRARRAVvSNADLMTTRKIVA-----GSLLPSTSTQCAASDALVKYLDAQLARTeRCDSFLHLHLGIDATGlpteaseafpaqwasidswergvdaprnLVLVSMASlLDKSLAPDGCHVLHAYVpatepfeswekFiksTDKDTGSNVydedryNSLEYREAKEEAAEVLWKAIERYIPDVRARTKVQRIGTPLTHKRYLRRDRGTYGAYL--SASTGEVLMGHKTPLPGFLLCGDSTFPGIGMPAVAASGLITANSIVS 408
                 556679999*******************9999999988887.455555555554404443333333333.....222233444556677777777665544413455567777777777777777777777777778888899999766788755155678*****99988643222211111122222333333332211114567999**********************************************9754..45569999*****************************9999888775 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06   0.00091     122     191 ..     101     171 ..      94     225 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
   TIGR02485 122 fllGGGkalvnalyasaerlGveiryeaeveriereedgratiaarlaaader.iatkavvlaaGGlganr 191
                 +++ G k++v al++  e+ G e+r +++v+ri  e++  + + +++ +++er i+++  v++   l + r
  MMETSP1174-20130828|9146_1 101 YPKNGTKSIVGALLRGLEKNGGELRLNSPVKRIVVEDGRAQGVVVQSKGGGERvIRARRAVVSNADLMTTR 171
                 67789******************************777777778888777776489999998877666655 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.5e-05      0.01     131     186 ..     108     162 ..      99     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
   TIGR01813 131 eivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVvl 186
                  iv +l + ++k+g elrlns v  ++  ++g+ +Gv+v++kg+  +++ a+  v+
  MMETSP1174-20130828|9146_1 108 SIVGALLRGLEKNGGELRLNSPVKRIVV-EDGRAQGVVVQSKGGGERVIRARRAVV 162
                 6999***********************9.678*********998877766655555 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00022      0.15     221     270 ..     115     163 ..      99     179 .. 0.75
   2 ?   -1.5   0.0      0.24   1.7e+02     415     451 ..     371     405 ..     351     407 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00022
   TIGR02731 221 dyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvs 270
                   +++ gge+rln+++k+iv+ edg  +  +++ + g e++     a vs
  MMETSP1174-20130828|9146_1 115 RGLEKNGGELRLNSPVKRIVV-EDGRAQGVVVQSKGGGERVIRARRAVVS 163
                 557899*************97.6888888888777766665544455555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.24
   TIGR02731 415 aqktpienfflagdytkqkylasmegavlsgklaaqa 451
                   ktp+++f l+gd t       m     sg ++a++
  MMETSP1174-20130828|9146_1 371 GHKTPLPGFLLCGDSTFPGI--GMPAVAASGLITANS 405
                 4689**********986532..455555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1207.99
//
Query:       MMETSP1174-20130828|9147_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 1871.14
//
Query:       MMETSP1174-20130828|9154_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.012   12.8   0.0    1.0  1  TIGR03827 GNAT_ablB: putative beta-lysine N-acetyltransferase
      0.015   13.1   0.0      0.018   12.9   0.0    1.0  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR03827  GNAT_ablB: putative beta-lysine N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     6e-06     0.012      45     132 ..       4      91 ..       2      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6e-06
   TIGR03827  45 kvpeskkelfeeegyveEaaipgyysgkdavflskyleesRkkssekekeeevleavlskerkeksalpekyklrkateadaealaal 132
                 +v  s+ +l +++ +   a++  +++ kd ++  +    +R++++ ++ e+evl+++++k+  ++++l++++   ++ ++d++ + + 
  MMETSP1174-20130828|9154_1   4 YVMPSHFQLTLTCDCPSTARVAYMFQLKDQQLWETRYAGRRAEKRAESLEKEVLAQLRAKHGGQENDLENRHPNATTPHEDVRLMLKF 91 
                 566677788889999999***********88888878889999***********************9**9999999999998887665 PP

>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.6e-06     0.018      16      83 ..      26      93 ..      18     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.6e-06
   TIGR00568 16 silkeaeqdpfrqykeadggeektlsvartvlkkLrWvtlgeqYdytskeyetdkksPdfPkdlgdlv 83
                 + + + q++++  + + + e+++ s ++ vl +Lr    g++ d +++++++  +  d+   l++l+
  MMETSP1174-20130828|9154_1 26 YMFQLKDQQLWETRYAGRRAEKRAESLEKEVLAQLRAKHGGQENDLENRHPNATTPHEDVRLMLKFLT 93
                5677899**********************************************999988888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|9155_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 800.73
//
Query:       MMETSP1174-20130828|9156_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|9157_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|9161_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 157.74
//
Query:       MMETSP1174-20130828|9163_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 674.61
//
Query:       MMETSP1174-20130828|9158_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1059.21
//
Query:       MMETSP1174-20130828|9164_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|9166_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 286.60
//
Query:       MMETSP1174-20130828|9168_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|9174_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|9170_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-20   70.5   0.0    5.4e-20   69.8   0.0    1.3  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
      7e-15   51.9   0.0    9.8e-15   51.5   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    3.1e-13   46.7   0.0    4.2e-13   46.3   0.0    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    4.2e-13   46.3   0.0      6e-13   45.8   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    9.2e-10   36.3   0.0    1.3e-09   35.8   0.0    1.2  1  TIGR01929 menB: naphthoate synthase
    1.7e-09   35.1   0.0    2.4e-09   34.6   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    1.7e-09   35.2   0.2    6.4e-08   30.0   0.0    2.1  2  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
      6e-05   19.8   0.1    0.00011   18.9   0.0    1.3  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
    6.5e-05   20.2   0.3    6.5e-05   20.2   0.2    1.7  2  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
  ------ inclusion threshold ------
      0.027   12.0   0.0      0.049   11.1   0.0    1.3  1  TIGR02134 transald_staph: transaldolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.3e-22   5.4e-20       6     202 ..      24     224 ..      18     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 1.3e-22
   TIGR02280   6 ekgvlrltlnrpdklnsfteemhaelaealerverdd..vrallltG.aGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrl.aalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqa.laahlakqptrg 202
                 ++g l + lnrp+k+n+++ em + + ea+++v      v+ ++lt   G+ fcaG d++  +  ++a   +  +  + y+   r   aa  +pvv+  +G+  GaGa l +a+++ + ++ + f +  +++Glipd+G  +++ ++   +      ++g +l++    + Gl  + v  ++ a++v + l + l+++p++ 
  MMETSP1174-20130828|9170_1  24 DNGFLEIRLNRPEKFNCLNLEMLSLMHEAMDHVTDSTavVKGIVLTAvQGKAFCAGGDIKFVEGLPSAHEKIEFLF-TEYSLHQRIYaAAQRMPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLIPDAGALHFMRKICPPTVGLYACVTGARLSTCDVIHTGLGTHFVPSAHSAESVTSmLVRYLTSSPAEE 224
                 468899***************************9877678999999735**********99888877766665444.4555555544245678***************************************************99999999998999999**999999999999999888666665541566677777765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.4e-17   9.8e-15      21     181 ..      25     185 ..      11     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.4e-17
   TIGR02441  21 gdvavvkidspnskvntlskelsaefkevldeletnea.vksavlisskpgsfvaGadidmlkacktaeevtqlsreaqkllekleks..kkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkki 181
                 ++ + ++++ p+ k n+l+ e+ + ++e +d+++ + a vk +vl + +  +f aG di++++   +a+e  ++      l +++  +  + p+va   G  +G G  l +a + r+ t+  +t++++pe  +Gl+p aG+   + k+      l   +tG ++
  MMETSP1174-20130828|9170_1  25 NGFLEIRLNRPE-KFNCLNLEMLSLMHEAMDHVTDSTAvVKGIVLTAVQGKAFCAGGDIKFVEGLPSAHEKIEFLFTEYSLHQRIYAAaqRMPVVAIADGIVMGAGAGLFMAANVRVVTN--RTIFAMPETNIGLIPDAGALHFMRKICPPTVGLYACVTGARL 185
                 667789999996.9******************98776527999*********************9999887776666677788886541157*************************996..8******************99999998777777777777666 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     1e-15   4.2e-13      20     187 ..      35     203 ..      18     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1e-15
   TIGR02440  20 geklntlkaefadqvaeilkqlkekke.lrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellael..ealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpks 187
                  ek+n l+ e+ + ++e ++++ +++  ++g+vl + +  +f ag di++++   +a+e   +     +l +++  +a  ++vva   g  +g g  l +a   rv +  ++t++ +pe ++gl+p +g    + ++   +  l   +tg +l + + ++ gl  + vp +
  MMETSP1174-20130828|9170_1  35 PEKFNCLNLEMLSLMHEAMDHVTDSTAvVKGIVLTAVQGKAFCAGGDIKFVEGLPSAHEKIEFLFTEYSLHQRIyaAAQRMPVVAIADGIVMGAGAGLFMAANVRVVT--NRTIFAMPETNIGLIPDAGALHFMRKICPPTVGLYACVTGARLSTCDVIHTGLGTHFVPSA 203
                 489******************99876527******************************99999999999999832356799************************98..69********************99999999***********************99999976 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.5e-15     6e-13       7     158 ..      17     170 ..      14     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.5e-15
   TIGR02437   7 tlqvelledgiaelvfdapgsvnkldratlasldkaldalkaq.sdlkglllts.dkdafivGaditeflelfakpeeell...qwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprli 158
                  +q +l ++g  e+ ++ p+  n l+ + l+ +++a+d ++++ + +kg++lt+ + +af  G di  f+e +   +e+++   +  +  +++++  +   +p va+ +G+ +G G  + +a++ r++++ +   +pet +G++p  G    + ++ 
  MMETSP1174-20130828|9170_1  17 VIQSNLHDNGFLEIRLNRPEKFNCLNLEMLSLMHEAMDHVTDStAVVKGIVLTAvQGKAFCAGGDIK-FVEGLPSAHEKIEflfTEYSLHQRIYAAAQ--RMPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLIPDAGALHFMRKIC 170
                 6777888999****************************998751678****99735689******95.777776666554400044444555665554..57889999*************************************998766665554 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.1e-12   1.3e-09       7     142 ..      21     159 ..      17     245 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 3.1e-12
   TIGR01929   7 eksedaiakiaidrpkvrnafrpktvdellealddaredsdi.GvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvlevqrlirtlpk..pvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdg 142
                 + ++++  +i ++rp+  n +  +  + + ea+d+   ++ +   ++lt   +kafc+GGd k        +e+ e  +    +++ i +  +  pv+a+ +G  +G G  l +  ++ + +++++f   ++++G    
  MMETSP1174-20130828|9170_1  21 NLHDNGFLEIRLNRPEKFNCLNLEMLSLMHEAMDHVTDSTAVvKGIVLTAVQGKAFCAGGDIKFVEGLPSAHEKIEFLFTEYSLHQRIYAAAQrmPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLIPD 159
                 56789999***************************9988765267999*99**********88776666777777777777788888876553339**********************************999997633 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.8e-12   2.4e-09      41     225 ..      30     214 ..      19     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 5.8e-12
   TIGR03200  41 iildnpkqynsyttdmvkaiilafrrassd.rdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfnd..mvsailgc..dkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvpalkvdgkfvanplv 225
                 i l+ p ++n    +m+  +  a+ + + +   v+ +v+tav  kafc+gg+ k    +  g p  + +   lf +  + + i +     pv++  +g+ +g g  + maa++ v  + ++f       g  ++ ga  f+  +      ++++++    s+  + ++g+ ++ vp+ +   + v+  lv
  MMETSP1174-20130828|9170_1  30 IRLNRPEKFNCLNLEMLSLMHEAMDHVTDStAVVKGIVLTAVQGKAFCAGGDIK----FVEGLPSAHEKIEFLFTEysLHQRIYAAaqRMPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLIPDAGALHFMRKICPPTVGLYACVTGARLSTCDVIHTGLGTHFVPSAHS-AESVTSMLV 214
                 789***************9999998876550557789**************987....455666666666666654215667766511469*************************************************************************************8754.455555555 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.6e-10   6.4e-08       9     137 ..      24     157 ..      20     208 .. 0.86
   2 ?    3.0   0.0     0.028        11       9      60 ..     383     436 ..     378     439 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.6e-10
   TIGR03210   9 rngvatiiinraeklnafrgrtcdelikalkka.gydreigvivlagagdkafctggdqsthdgnydgrgviglpvee..lhsairdvak..pviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsv 137
                 +ng   i +nr+ek+n++  +    + +a+++  +    +  ivl+    kafc+ggd    +g       i + + e  lh+ i   a+  pv+a  +g  +g g  l   +++ ++++++++     ++g +
  MMETSP1174-20130828|9170_1  24 DNGFLEIRLNRPEKFNCLNLEMLSLMHEAMDHVtDSTAVVKGIVLTAVQGKAFCAGGDIKFVEGLPSAHEKIEFLFTEysLHQRIYAAAQrmPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLI 157
                 689999***************999999999876155566789***************************999987776448999988764459******************************99888888765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.028
   TIGR03210   9 rngvatiiinraeklnafrgrtcdel.ikalk.kagydreigvivlagagdkaf 60 
                  +gva  +  r  +   + g+ cd + i+a++ + ++  + g++ l g  d+ f
  MMETSP1174-20130828|9170_1 383 TEGVACAVGVRRGEAPRWEGTGCDHVtIQAIEsDIEHHMQSGTLTLNGVRDRLF 436
                 5788888888888899999*****97589996357899999**********998 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.6e-07   0.00011      41     171 ..      37     163 ..      24     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.6e-07
   TIGR03222  41 klnsydlGvdieladalqrlrfehpevrvvvltsakdkvfcaGanikmlgl.sthahkvnfckftn.etrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGl 171
                 k+n  +l +   +++a+  +      v+ +vlt+ + k fcaG +ik + +  +   k++f  ft+    + i +a +  ++  +a+ +G + G G  l +a++  v+  +  +  ++pe   ++++p +G l
  MMETSP1174-20130828|9170_1  37 KFNCLNLEMLSLMHEAMDHVTDSTAVVKGIVLTAVQGKAFCAGGDIKFVEGlPSAHEKIEFL-FTEySLHQRIYAAAQ--RMPVVAIADGIVMGAGAGLFMAANVRVVT-N-RTIFAMPETN-IGLIPDAGAL 163
                 5666777777778999999999999*********************9986515555689996.665144556666654..57789999**************9865544.3.4567889875.5777877776 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   1.6e-07   6.5e-05       8     137 ..      24     162 ..      20     187 .. 0.80
   2 ?   -2.8   0.0       1.6   6.7e+02      38      74 ..     337     362 ..     311     376 .. 0.53

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.6e-07
   TIGR03189   8 dgkllrlrlarp.kanivdaamiaalraalgealeaaal.r.avlldaegphfsfgasve..ehmpdqcaam..l...kslhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaas 137
                 d  +l +rl rp k n ++ +m++ +++a+ +  +++a+ +  vl   +g  f  g  ++  e +p    ++  l    slh+ + +     +p++    g  +g g  + +a n+  ++  + +  pe ++g++  a +
  MMETSP1174-20130828|9170_1  24 DNGFLEIRLNRPeKFNCLNLEMLSLMHEAMDHVTDSTAVvKgIVLTAVQGKAFCAGGDIKfvEGLPSAHEKIefLfteYSLHQRIYAAA-QRMPVVAIADGIVMGAGAGLFMAANVRVVTNRTIFAMPETNIGLIPDAGA 162
                 566899*****9778***************9988887752424677789*******988655899976554322423358888877654.579999999**********************************8755543 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
   TIGR03189  38 ealeaaalravlldaegphfsfgasveehmpdqcaam 74 
                  +  +aa    + d+eg            m d ca+m
  MMETSP1174-20130828|9170_1 337 GHRASAASSLNFRDSEG-----------SMGDMCAEM 362
                 33333333333333333...........344444444 PP

>> TIGR02134  transald_staph: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012     0.049     138     178 ..     254     294 ..     246     309 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00012
   TIGR02134 138 paivsvfaGriadtGvdplplmkealkivrqkegvellwas 178
                 p+i + f+   ad G+d ++ m  alk  +qk+ + l+ + 
  MMETSP1174-20130828|9170_1 254 PCIDACFTLGPADRGRDDMDAMMTALKAQHQKKKLALVATR 294
                 77777888888**********************99997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1262.50
//
Query:       MMETSP1174-20130828|9172_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.51
# Mc/sec: 1498.46
//
Query:       MMETSP1174-20130828|9169_1  [L=928]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 2606.08
//
Query:       MMETSP1174-20130828|9176_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-07   27.9   0.0    1.4e-05   22.1   0.0    2.1  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
    0.00053   17.7   0.4       0.84    7.4   0.0    3.3  3  TIGR02608 delta_60_rpt: delta-60 repeat domain
     0.0082   13.6   0.0      0.019   12.4   0.0    1.7  1  TIGR03784 marine_sortase: sortase, marine proteobacterial type


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00091       1.2      52     117 ..      23      85 ..      17      89 .. 0.61
   2 !   22.1   0.0     1e-08   1.4e-05      20     206 ..      72     262 ..      65     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00091
   TIGR03866  52 gkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkv 117
                 ++ l+++as + +++v d+ + + l++l+ G+    + l+++g l+      d  v v d+++++v
  MMETSP1174-20130828|9176_1  23 QEALLLTASSDGSIKVWDTGSGRALSTLRGGQP--IVSLDQSGSLV-AGASTDRSVRVWDMNTERV 85 
                 455667777777777777777777777777752..44555555443.3444555666666666554 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1e-08
   TIGR03866  20 dntisvidletlevvktlk.vGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGveP.eGlavsPdgklvvntsettnmahfidtetlkivdnvlvda.....rPraaeftadgkelwvsseigGtvsvidvatrkvikkit 206
                 d ++ v d++t +v+  ++   ++   i ++ dg++ +v+ s + +++v d  + ++++++++    + + +++dg  + ++  +d  v + d+ +   +ae +  ++     a sP g + + t    n +  +d++tl++++ +  d+         a ++ dg+ + + s  +G v v dv++   +++++
  MMETSP1174-20130828|9176_1  72 DRSVRVWDMNTERVKLHCTgHSNKVHAIRFTSDGRQ-MVSGSTDRTIKVWDCVSGRETRSFRANSTCNSVDISADGT-IIVSGHQDGHVRIWDMGTGGKVAESKAHLNQvTCTAFSPRGGMTILTNGRDNRLKILDARTLDATKTMQYDSyrvayNWSRACWSWDGQFVAAGS-ATGMVHVWDVTSGACKTNLS 262
                 667888888888776554315678899******997.6899999************************999998886.56999*********************9998625789********************999999888777666510000444566777887665554.67999999999877777665 PP

>> TIGR02608  delta_60_rpt: delta-60 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00061      0.84       2      22 ..      95     115 ..      94     126 .. 0.83
   2 !    6.7   0.0     0.001       1.4       2      20 ..     136     154 ..     135     160 .. 0.84
   3 ?   -2.7   0.0      0.85   1.2e+03      11      20 ..     234     243 ..     233     247 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00061
   TIGR02608   2 rayavavqsDGkIlvaGysdn 22 
                 +++a+ + sDG+ +v+G++d 
  MMETSP1174-20130828|9176_1  95 KVHAIRFTSDGRQMVSGSTDR 115
                 689**************8764 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.001
   TIGR02608   2 rayavavqsDGkIlvaGys 20 
                 ++++v++ +DG I+v+G  
  MMETSP1174-20130828|9176_1 136 TCNSVDISADGTIIVSGHQ 154
                 6899*************54 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.85
   TIGR02608  11 DGkIlvaGys 20 
                 DG  ++aG++
  MMETSP1174-20130828|9176_1 234 DGQFVAAGSA 243
                 8888999964 PP

>> TIGR03784  marine_sortase: sortase, marine proteobacterial type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.4e-05     0.019      62     152 ..     116     202 ..     105     223 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.4e-05
   TIGR03784  62 elvvLaGasgr.nlAFgpaalaasaqvgeegnsviagHrDtHFaaLqelkkgdvielqtkegklqeykvtatevvdesetellasaddsqLv 152
                 ++ v + +sgr +  F +    +s  +++ g+ +++gH+D H ++ +  + g   ++++++++l+  +vt t        ++l++  d++L 
  MMETSP1174-20130828|9176_1 116 TIKVWDCVSGReTRSFRANSTCNSVDISADGTIIVSGHQDGHVRIWDMGTGG---KVAESKAHLN--QVTCTAFSPRGGMTILTNGRDNRLK 202
                 5567777777624589999999999*****************9987644433...3444455544..6666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|9179_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.0   0.0      0.029   11.0   0.0    1.0  1  TIGR03699 mena_SCO4550: menaquinone biosynthesis protein, SCO4550 family


Domain annotation for each model (and alignments):
>> TIGR03699  mena_SCO4550: menaquinone biosynthesis protein, SCO4550 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.1e-06     0.029     291     332 ..      15      56 ..       4      57 .] 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.1e-06
   TIGR03699 291 lfGanDlgsvmleEnVvaaagvkveaskeeiiklireagfip 332
                 ++Ga+D+ + m e nVv ++ ++  +     + l++++g +p
  MMETSP1174-20130828|9179_1  15 MCGADDFYTAMHEHNVVLEKETSDAIGMLAEVFLAKTEGERP 56 
                 79***************9999888777744444556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|9181_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1174-20130828|9182_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|9186_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|9184_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   12.7   0.0     0.0056   12.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.4e-06    0.0056      78     187 ..      32     148 ..      22     178 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-06
   TIGR03903  78 aaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGi.gaLlpgvedadeatltrttevlGsPaYaaPeqLRg....epvta....ksDlYaWGLivleCLtGkr 187
                   et    + +L +l   h +   hR L P+n+++ a+++        F +   L p  ++  + +   ++  +  P+Y +Pe ++     +   +     +D+++ G ++ eCL G+ 
  MMETSP1174-20130828|9184_1  32 ERETEFYAMEILLGLNDLHINHTCHRYLTPENVLIDANGHVVLTG--HFFLdEKLKPSSGNLMRSRSFESERTMDCPEYKSPEVVKAyihdDNAVPfcfqVADYWSLGCLLYECLHGRS 148
                 5677777788999999*******************9998765443..333316899***************************9875222233322222268**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 776.71
//
Query:       MMETSP1174-20130828|9190_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.47
# Mc/sec: 238.70
//
Query:       MMETSP1174-20130828|9194_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1174-20130828|9196_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1174-20130828|9195_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.97
# Mc/sec: 493.94
//
Query:       MMETSP1174-20130828|9204_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|9201_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 838.31
//
Query:       MMETSP1174-20130828|9207_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 486.89
//
Query:       MMETSP1174-20130828|9203_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.63
# Mc/sec: 1181.62
//
Query:       MMETSP1174-20130828|9211_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 144.36
//
Query:       MMETSP1174-20130828|9209_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|9210_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06    8.9   0.0       0.08    8.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     2e-05      0.08       6      65 ..     366     425 ..     362     440 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 2e-05
   TIGR03903   6 vaikllRedaaeeerlv.aRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrt 65 
                 va k l   a+ + + + +   +e ++  +L+hPniv+ l     +d +++ v ey +   
  MMETSP1174-20130828|9210_1 366 VATKRLAVFAPSNDHSMgKLLAKEATALSKLHHPNIVQFLGLCY-KDSFMYIVTEYLPCTL 425
                 666666667776666551456899999*************6654.5669*******98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.77
# Mc/sec: 776.51
//
Query:       MMETSP1174-20130828|9212_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1174-20130828|9214_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-09   33.8  13.8    6.3e-09   33.8   9.5    2.2  2  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.13   5.3e+02      49      75 ..     210     236 ..     198     246 .. 0.60
   2 !   33.8   9.5   1.5e-12   6.3e-09      11     152 ..     262     401 ..     257     403 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.13
   TIGR03902  49 rlrarrllllllllsllislglllllp 75 
                  +++++l+++++ ++ll+ ++++ l+p
  MMETSP1174-20130828|9214_1 210 FFKTASLWIAVAQICLLVVMMTYGLAP 236
                 444445555555555555555555444 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.5e-12
   TIGR03902  11 iaegewWRlltghlvHlnwaHlllnlagllllvllferrlrarrllllllllsllislglllllpeleaYvGLSGvlhGlfalga..lrdirkkrksswl.lllgvlaklaleqltgasastaeligarvaveaHlaGalsGlll 152
                 + ++ewWRl++ +l+H ++ Hll+n++  + ++l +e ++ + ++l ++++++++ +l+ + + p++ + vG SG+l Gl+ + +  + +i    + + + +  ++l+ +++++++  s s+  +    v + aHl G+++Gll+
  MMETSP1174-20130828|9214_1 262 VFNNEWWRLWSPMLLHGGVIHLLFNVLLQIRVGLTLEYKWGIGMFLGVYMVSGTVATLLSCCCIPDTLS-VGSSGALMGLLGAWLseILCIWGTLSPEDVkMHGVYLIMIVINIAITLSFSMVPF----VDWAAHLGGLIGGLLM 401
                 4589********************************************************999999876.9*********976652333333333333222333444444444444445543334....55689*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1461.31
//
Query:       MMETSP1174-20130828|9216_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 939.64
//
Query:       MMETSP1174-20130828|9227_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1362.47
//
Query:       MMETSP1174-20130828|9230_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.0   0.6      0.005   12.9   0.4    1.0  1  TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family


Domain annotation for each model (and alignments):
>> TIGR01667  YCCS_YHJK: integral membrane protein, YccS/YhfK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.4   1.2e-06     0.005     571     643 ..      10      83 ..       6     101 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-06
   TIGR01667 571 AHnadaaLsttlsnmlqEPaktkkylekgfrllvlshtllsyisalgArrerlkn.pelaaellqaveivakal 643
                 AH ++   ++++ n + +P k++ ++ ++++  ++   l  ++ a  Arr r+    +++  ll a+  + +++
  MMETSP1174-20130828|9230_1  10 AHHTADSTYNVVTNDTIDPKKNRDMKSSTYQQATHKLRLHHHLHACRARRARAAStMAMTRALLAAALALFASI 83 
                 9999999********************************************98761566777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 411.05
//
Query:       MMETSP1174-20130828|9228_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   20.7  25.9      0.011   13.4   0.1    7.7  7  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.4     0.057   2.3e+02       5      20 ..       4      19 ..       3      20 .. 0.82
   2 ?   -0.9   1.0     0.093   3.8e+02      12      20 ..      78      86 ..      77      86 .. 0.85
   3 ?    0.7   0.0     0.028   1.2e+02       6      16 ..      99     108 ..      95     112 .. 0.74
   4 !    6.9   0.0   0.00032       1.3       6      18 ..     124     136 ..     122     136 .. 0.95
   5 !    6.1   0.1   0.00056       2.3       7      19 ..     151     163 ..     151     170 .. 0.91
   6 !    5.2   0.1    0.0011       4.3       6      18 ..     176     187 ..     176     189 .. 0.91
   7 !   13.4   0.1   2.7e-06     0.011       3      27 ..     198     223 ..     196     224 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.057
   TIGR01376  5 ilFsnNsakgsGGAIy 20
                ++F++ s+ ++GG+++
  MMETSP1174-20130828|9228_1  4 VFFTSCSSQTNGGGLS 19
                678888999****975 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.093
   TIGR01376 12 akgsGGAIy 20
                a+ +GG+Iy
  MMETSP1174-20130828|9228_1 78 AGFYGGGIY 86
                6679****9 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.028
   TIGR01376   6 lFsnNsakgsG 16 
                  F++Nsa   G
  MMETSP1174-20130828|9228_1  99 EFESNSAY-EG 108
                 6******9.44 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.00032
   TIGR01376   6 lFsnNsakgsGGA 18 
                 +F +N a ++GGA
  MMETSP1174-20130828|9228_1 124 VFRYNVASHHGGA 136
                 6***********9 PP

  == domain 5    score: 6.1 bits;  conditional E-value: 0.00056
   TIGR01376   7 FsnNsakgsGGAI 19 
                 F +Nsa   GGA+
  MMETSP1174-20130828|9228_1 151 FVSNSASSDGGAL 163
                 889*********7 PP

  == domain 6    score: 5.2 bits;  conditional E-value: 0.0011
   TIGR01376   6 lFsnNsakgsGGA 18 
                 +F+ N+a+ +GGA
  MMETSP1174-20130828|9228_1 176 TFEANQAG-YGGA 187
                 7*******.9999 PP

  == domain 7    score: 13.4 bits;  conditional E-value: 2.7e-06
   TIGR01376   3 gtilFsnNsakgsGGAI..yatgkisi 27 
                 ++ +F +N+a+++GGA+  y+  +i+i
  MMETSP1174-20130828|9228_1 198 KECTFQSNTAGNHGGALllYSA-TITI 223
                 5789************633555.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 2214.48
//
Query:       MMETSP1174-20130828|9231_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 879.10
//
Query:       MMETSP1174-20130828|9237_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   58.0  11.7    2.5e-06   25.0   0.2    3.3  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
  ------ inclusion threshold ------
      0.027   11.7   0.0      0.029   11.6   0.0    1.1  1  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   1.2e-09   2.5e-06       2      25 ..       1      23 [.       1      24 [. 0.97
   2 !   18.3   0.7   1.5e-07   0.00031       1      25 [.      25      48 ..      25      49 .. 0.92
   3 !   21.5   0.2   1.5e-08   3.1e-05       1      25 [.      51      74 ..      51      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.2e-09
   TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnMs 25
                F++ +s+++ D+S +++++VT M 
  MMETSP1174-20130828|9237_1  1 FYYATSFNQ-DISAWNVGSVTSMG 23
                9********.*************5 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.5e-07
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF + +s+ + D+S +++++VT+  
  MMETSP1174-20130828|9237_1 25 MFHSATSFDQ-DISAWNVGSVTTTM 48
                9*********.*******9999865 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 1.5e-08
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF++ +s++  D+S +++++VT+  
  MMETSP1174-20130828|9237_1 51 MFRSATSFNH-DISAWNVGSVTTTG 74
                **********.***********975 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.4e-05     0.029      56     110 ..       7      62 ..       4      84 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
   TIGR04123  56 LealieelqpeelivlGDlfhdreaaerl.elealaelrelaaglevvlveGNHDr 110
                  ++ i+++++ ++ ++GD+fh+ ++ ++   + ++ + ++++ ++     + NHD+
  MMETSP1174-20130828|9237_1   7 FNQDISAWNVGSVTSMGDMFHSATSFDQDiSAWNVGSVTTTMYRMFRSATSFNHDI 62 
                 57889999**************9987743133344444444444444555667775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 367.97
//
Query:       MMETSP1174-20130828|9232_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-170  564.6   6.7   5.7e-170  564.4   4.6    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
     2e-136  453.7   4.6   2.4e-136  453.5   3.2    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    4.4e-13   46.8   1.5    7.5e-13   46.1   1.0    1.3  1  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    2.7e-09   34.7   3.5    3.1e-08   31.2   1.8    2.6  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    0.00086   16.3   0.2        0.4    7.5   0.0    2.3  2  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.4   4.6    7e-173  5.7e-170      21     550 ..       3     560 ..       1     585 [. 0.90

  Alignments for each domain:
  == domain 1    score: 564.4 bits;  conditional E-value: 7e-173
   TIGR02350  21 epvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaenevkveve....dkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekk.......dekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkee..gidLskdkmal.....qrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkge............vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdklee 550
                 + +v++n +G rttPs vaf+++  r+vG++ak qa +n  nt++ +kr+iGr ++   +++e+k+ p+++vea+ +  vev+    +++++pe isa++L+++k++aea lG++vt+av+tvPa+fnd qrqatkdaG+iaGlevlriinePtaaaLayGl+++++       +++++vfdlGGGtfdvs+l +++gv+ev++t Gdt+LGG+dfd++++d++++++ + +      +k  +al     +rl+ a e ak +Ls +++t i++  +  d++    ++++ltra fe++ ++l+ r++++v+ +l+dakl +++i +v+lvGGstri a+q ++kel+  +  ks+nPde+va Gaa+qg +l+               +d+lL+dvtPLsLgie  G  +++li+rnt iP++k+++++t +d q+ +++ v+ Ge++    n++lg+f+++g+  a  G pq++vtf +danGil+vsa+dk+t    + +i+a s+ l+eeei+ m+ eae+++++d ++ +++ +rn  ++ +y+a  + +++g+  ee
  MMETSP1174-20130828|9232_1   3 KVQVLNNMQGFRTTPSFVAFTSK-GRVVGQPAKDQAAMNVRNTVYDVKRIIGRGWDddVLQKEKKAFPFNLVEANGRPLVEVDwrgsTRRLAPEAISAMVLTEMKRSAEAALGHPVTKAVVTVPAHFNDQQRQATKDAGRIAGLEVLRIINEPTAAALAYGLQEKSStladdtvKTNVMVFDLGGGTFDVSVLTMDGGVLEVRATGGDTHLGGEDFDNALMDWVTHNMAEASenPPATKKKLKALngrqaRRLRSACEDAKRQLSVTASTVIEVESLLEDQD----VSMELTRADFEAVSAPLMARCMKAVNGVLQDAKLGVTDISDVVLVGGSTRILALQGQLKELFKLDLCKSINPDEAVAYGAAVQGRILATGgtgggtdlalggCSDLLLVDVTPLSLGIELEGKQMSTLIKRNTPIPCRKTRTYTTVQDYQTEIDVVVYEGEKPCVDANNKLGEFQISGVLRAKAGEPQVQVTFALDANGILKVSAEDKQTHAIAHAEIKAgSGRLTEEEIDEMIMEAERFRAQDDEMSKKLSLRNAIEDGVYRALAQTRDKGEDTEE 560
                 6789******************9.79*****************************96457899999********9955444433333789************************************************************************8753212221225689***********************************************99976542133445555555333336************************9998875....78999*********************************************************************************973223334456555589******************************************************************************************************************982457***************************************99999999887654 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.5   3.2  2.9e-139  2.4e-136      19     519 ..       2     540 ..       1     579 [. 0.88

  Alignments for each domain:
  == domain 1    score: 453.5 bits;  conditional E-value: 2.9e-139
   TIGR01991  19 gkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakge...mvrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk........aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil............kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrk........e..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkp.sygLsdeeiekmlkds..lknaeeDmeaRalaekkv 519
                 +k++vl++ +g  + ps v ++++ +  vG+ ak +aa + +nt+  vkR++Gr+ +d  ++ke++  p++l++a+g+    v  + ++++++P  +sa +L ++k+ ae alg+ +++av+tvPA F+d qrqatkdA+r+agl+vlR++nePtaAA+AYGl++        + ++ ++v+DLGGGtFDvs+L ++ Gv ev atgGd++LGG+DfD+al+++++            +k++l ++l+  +++ l +a + ak++L+ ++++ +ev+   e++d++++l+r+++e++ ++l+ + +++v+ +l+da+l v +i++vvlvGGstr+ +++ +++elFk +  ++++Pde vA GAa+q  +La   +         +  dllL+Dv+PLsLG+e  G  +  +i Rnt+iP  k++ +tt +D qt + + v  Ge+  v+ +  L+ F+++g+   +AG  +++vtf +Da+G+l+vsa++k t+  a+ e+k  s  L++eei++m++++  ++  +++m++++   + +
  MMETSP1174-20130828|9232_1   2 QKVQVLNNMQGFRTTPSFVAFTSK-GRVVGQPAKDQAAMNVRNTVYDVKRIIGRGWDDdvLQKEKKAFPFNLVEANGRplvEVDWRGSTRRLAPEAISAMVLTEMKRSAEAALGHPVTKAVVTVPAHFNDQQRQATKDAGRIAGLEVLRIINEPTAAALAYGLQEksstladdTVKTNVMVFDLGGGTFDVSVLTMDGGVLEVRATGGDTHLGGEDFDNALMDWVThnmaeasenppaTKKKL-KALNGRQARRLRSACEDAKRQLSVTASTVIEVESllEDQDVSMELTRADFEAVSAPLMARCMKAVNGVLQDAKLGVTDISDVVLVGGSTRILALQGQLKELFKLDLCKSINPDEAVAYGAAVQGRILATGGTGggtdlalgGcsDLLLVDVTPLSLGIELEGKQMSTLIKRNTPIPCRKTRTYTTVQDYQTEIDVVVYEGEKPCVDANNKLGEFQISGVLRAKAGEPQVQVTFALDANGILKVSAEDKQTHAIAHAEIKAgSGRLTEEEIDEMIMEAerFRAQDDEMSKKLSLRNAI 540
                 5789********************.567***************************8765468888999****99988532234445566699***********************************************************************9977777666667889**********************************************987777666554333333.367777778888888899****98888776665334*******************************************************************************************9654431122223223489****************************************************************************************************************973567**********98722444445555555444445 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.0   9.1e-16   7.5e-13     100     323 ..     119     364 ..      97     371 .. 0.75

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 9.1e-16
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveep........tgsmvvdiGGGttevavislgG.ivvsks....irvaGdeldeaiikyirrkynlliGe..rtaekikieiGsayae....endeeeklevkGrdl..vtGlprtleldskev...lealkepv.seiveavkstlektpPelaadiverGivltGGGallknldkllsketklpvivaedpllavalGtG 323
                 k +++vP+   + +r+a k++ + aG +   +i+ep aaa+  +l  + +        t  mv d+GGGt +v+v+++ G ++  ++      ++G+++d+a+++++ ++      +  +t  k+k   G    +     +d +++l v       v+ l +++ ++ +     +ea++ p+  + ++av+ +l++++  + +di +  +vl GG + +  l+  l++  kl+ + + +p +ava G+ 
  MMETSP1174-20130828|9232_1 119 KAVVTVPAHFNDQQRQATKDAGRIAGLEVLRIINEPTAAALAYGLQEKSStladdtvkTNVMVFDLGGGTFDVSVLTMDGgVLEVRAtggdTHLGGEDFDNALMDWVTHNMAEASENppATKKKLKALNGRQARRlrsaCEDAKRQLSVTASTVieVESLLEDQDVSMELTradFEAVSAPLmARCMKAVNGVLQDAKLGV-TDISD--VVLVGGSTRILALQGQLKELFKLDLCKSINPDEAVAYGAA 364
                 689**************************************999876543111112225679***************97615455552223689*************9999877665225777788777764433111134777888888776511567777766654332111467777752568889999999888764.79987..9***********************************9985 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   1.8   3.8e-11   3.1e-08      43     140 ..      99     208 ..      94     245 .. 0.76
   2 ?    1.1   0.0     0.058        47     191     228 ..     318     355 ..     264     365 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 3.8e-11
   TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlk.............ngavvdvGGGttGisilk.kGkviysadeatGG 140
                   ++ ++k+++e  lG  +tka ++vP   ++++ +++ +    aGlevl++++ePtaaa +  l+             n  v d+GGGt  +s+l  +G v+ +   atGG
  MMETSP1174-20130828|9232_1  99 AMVLTEMKRSAEAALGHPVTKAVVTVPAHFNDQQRQATKDAGRIAGLEVLRIINEPTAAALAYGLQeksstladdtvktNVMVFDLGGGTFDVSVLTmDGGVLEV--RATGG 208
                 468899*****************************************************9887664222222222222245689***********9635666533..23333 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.058
   TIGR02529 191 ekqkvkdlylvGGassfsefedvfekelglevikpaep 228
                   +++ d+ lvGG++ +  ++  +++ ++l++ k+ +p
  MMETSP1174-20130828|9232_1 318 GVTDISDVVLVGGSTRILALQGQLKELFKLDLCKSINP 355
                 34578899999999887777777777667766666655 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00048       0.4     170     215 ..     143     196 ..     126     215 .. 0.77
   2 !    6.6   0.0   0.00096      0.79     245     340 ..     250     347 ..     224     359 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00048
   TIGR01174 170 aglevdnivlsslAsa........kavLtedEkelGvvlidiGggttdiavyte 215
                 aglev +i+ ++ A+a        +++L +d     v++ d+Gggt d++v t 
  MMETSP1174-20130828|9232_1 143 AGLEVLRIINEPTAAAlayglqekSSTLADDTVKTNVMVFDLGGGTFDVSVLTM 196
                 566666666666666522223222689**********************99875 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00096
   TIGR01174 245 eAEkiKikygsaliel.eseeesveipsvg..ereerelskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvfdk 340
                 +A +++    +a  +l +++++++e++s+   ++ + el++++  ++    +   ++ v+   l++++l  + ++ +vl GG +++  ++   +++f+ 
  MMETSP1174-20130828|9232_1 250 QARRLRSACEDAKRQLsVTASTVIEVESLLedQDVSMELTRADFEAVSAPLMARCMKAVN-GVLQDAKLGVTDISDVVLVGGSTRILALQGQLKELFKL 347
                 66667777777888888899999999998634677888999999***************8.9******96666677*********99998888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1360.85
//
Query:       MMETSP1174-20130828|9234_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 1256.65
//
Query:       MMETSP1174-20130828|9244_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1180.96
//
Query:       MMETSP1174-20130828|9250_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.57
# Mc/sec: 172.95
//
Query:       MMETSP1174-20130828|9253_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 435.28
//
Query:       MMETSP1174-20130828|9257_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 504.80
//
Query:       MMETSP1174-20130828|9255_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   20.6   0.0    0.00024   19.8   0.0    1.4  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
    0.00027   19.0   0.0      0.015   13.3   0.0    2.1  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1


Domain annotation for each model (and alignments):
>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-07   0.00024       2     127 ..      40     170 ..      39     175 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.2e-07
   TIGR01681   2 vivfDlDnTLwtdeedvvkedpiedieltevtikeirdvLqelkknGvllalaSknddeevakellkiked.Yfd..vilpkaelfldltigkrlpKskr....lveilkklnsvlklksilfvDDlavnnee 127
                  +++D D+TL+++++    +++    +l++  ++  r ++ +  ++++ +a+++   + +  +++l ++   Y +  v++ +++   ++ +g    K+++    ++ei  k++ ++   s l+vDD   n+++
  MMETSP1174-20130828|9255_1  40 FVALDFDKTLIECHTGGAWKKS--VGSLARYIRPFFRTFIPAAIDSNINIAIVTFSPQVKLIQDMLMAEFPgYGEkiVVRGMNDSWRYTGEGLSDGKQGHmasaVEEISHKNKAMITRRSALLVDDDHLNIQH 170
                 599**********999555554..2245555599*******************999999999****99666899866333444444455555555566551111555566666***************99987 PP

>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.3e-06     0.015      46     154 ..      69     179 ..      37     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 7.3e-06
   TIGR01685  46 likevrdvLqslkdagvilaiasrndvpevareiLkifkik.yaGkvv..PlaelFdelvekekpsKakqleeilkklkkkspvelkpkeilfiDdrsvnvrevekygvkvk 154
                 +++  r ++  + d+++ +ai + + + +  +++L + ++  y  k+v   +++ + +  e+    K ++++  ++++ +k+   +  +  l++Dd + n+++  ++gvk +
  MMETSP1174-20130828|9255_1  69 IRPFFRTFIPAAIDSNINIAIVTFSPQVKLIQDMLMA-EFPgYGEKIVvrGMNDSWRYTGEGLSDGKQGHMASAVEEISHKNKAMITRRSALLVDDDHLNIQHALRNGVKAV 179
                 5566677888888999999999999888888888865.7766877765336999999999999999******************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 670.10
//
Query:       MMETSP1174-20130828|9260_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.49
# Mc/sec: 1831.69
//
Query:       MMETSP1174-20130828|9266_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   24.4   0.0    3.9e-06   23.9   0.0    1.1  1  TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family


Domain annotation for each model (and alignments):
>> TIGR04120  DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.6e-10   3.9e-06     189     275 ..      95     176 ..      91     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 9.6e-10
   TIGR04120 189 kgekpeeeaaakfrpvmLahpleeedlaaldpedyaaewkwDGiRvqlvkekgerrlysRtgedisdafPdlle.alefdgvlDGell 275
                  ++  +++ aa+ r+v+Lah  e+e+  +ldp+ + +  k DG+R+  +     +  ysR+g++  +  P+     l++d+ lDGel 
  MMETSP1174-20130828|9266_1  95 PANASHTQGAAEARTVLLAHKYEAEKKGKLDPTGWWMSEKLDGVRAYWS----GEAFYSRAGNLFEA--PQWFTaDLPKDTPLDGELW 176
                 5677899999***********************************9875....4679******9864..6654438**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 802.93
//
Query:       MMETSP1174-20130828|9267_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.61
# Mc/sec: 633.98
//
Query:       MMETSP1174-20130828|9264_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1105.98
//
Query:       MMETSP1174-20130828|9265_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1435.38
//
Query:       MMETSP1174-20130828|9271_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.60
# Mc/sec: 81.39
//
Query:       MMETSP1174-20130828|9273_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 251.60
//
Query:       MMETSP1174-20130828|9274_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   17.0   0.1    0.00085   15.8   0.0    1.5  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
  ------ inclusion threshold ------
      0.039   10.8   0.1       0.11    9.3   0.1    1.6  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.073   1.5e+02     612     629 ..      12      29 ..       5      41 .. 0.81
   2 !   15.8   0.0   4.2e-07   0.00085     642     679 .]      61      98 ..      54      98 .. 0.95

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.073
   TIGR02916 612 avieieDsGqGmseeFir 629
                 ++i+++D G Gm +e ++
  MMETSP1174-20130828|9274_1  12 ISIAVQDLGGGMGQETLK 29 
                 68999*******988766 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4.2e-07
   TIGR02916 642 aGmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                  G+G+Gv  s+     +GG+++++S++g+Gti tl lP
  MMETSP1174-20130828|9274_1  61 SGIGVGVPLSKLHADYFGGSLQLDSKVGEGTIATLSLP 98 
                 69**********************************99 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   5.2e-05      0.11     259     328 ..       9      92 ..       3      97 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.2e-05
   TIGR02966 259 eegaelsvkDtGeGIaaehlprltERFY.........Rvdksrs.....retgGtGLGLaIvkHvlerheaeLeieSelgkGst 328
                  +g+ ++v+D G G+ +e l+ lt   +         R++++ s     +  +G G G  + k     + ++L+++S++g+G+ 
  MMETSP1174-20130828|9274_1   9 GGGISIAVQDLGGGMGQETLKALTSTHFewnrkrqwdRIEDQVSymparQPFSGIGVGVPLSKLHADYFGGSLQLDSKVGEGTI 92 
                 56789999**********999999755522222222366666553332123589999999999999999***********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 472.61
//
Query:       MMETSP1174-20130828|9269_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-16   56.3   0.0    4.2e-16   55.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-10   39.3   0.0    1.1e-07   29.4   0.0    2.2  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    3.4e-07   27.8   0.0    6.5e-07   26.8   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   3.1e-19   4.2e-16       5     187 ..     363     549 ..     360     560 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 3.1e-19
   TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG.aLpaaetgrL....mlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrtte..vlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkr 187
                 + a+k + ++  e+       r e  l + L h  i  Ll s ++++  ++ v +y++   l +v+  +   +p ++ +++       + ++la  h +G+ +RDLkP+n++vs  +      ++D G +  lp +  +d +++  ++   v G+P+Y aPe L  g +     D++a+G ++ e + G++
  MMETSP1174-20130828|9269_1 363 EYAVKCMNKQLIEKGSELEHIRSERDLLDTLDHKLICGLLTSMQTKN-SVYLVMDYIKSVCLWDVMYDEDiQIPRKQSTEIkrfwASNIFESLAYLHTKGIAYRDLKPENLLVSDDGY---VILIDLGFSKALPHITCVDGKEVSSDHAytVCGTPEYLAPEMLlNGHAHDHSVDYWAFGCLLYELIIGHT 549
                 669999999999*********************************99.9****************987651566655554422224689************************98775...6899************9999999987752278*********972567788888***********999985 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   7.9e-11   1.1e-07     162     246 ..      61     140 ..      50     151 .. 0.88
   2 !    7.5   0.0   0.00037       0.5     146     195 ..     163     212 ..     155     233 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 7.9e-11
   TIGR03896 162 kkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaa 246
                 kk++l  ++vl++ g+a da+Yil +G+ ++ +      + v+  + G+++Gel+++  +   tatv+a e   l a+ + e+a 
  MMETSP1174-20130828|9269_1  61 KKVELDRDDVLMRQGDAGDAMYILEQGKLRIIVGD----KCVAFKKAGDVVGELALIFNEPR-TATVEAEEPCKLWALSRVEFAE 140
                 7889999************************9864....689***************88777.***************9998764 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00037
   TIGR03896 146 lgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsis 195
                 l  l++  +  la + +k+k+  g+vl +eg+ +   +++ +G+ els +
  MMETSP1174-20130828|9269_1 163 LNKLNDPTISRLAVAMRKRKIRDGEVLFREGDDIGECFLVEKGQLELSST 212
                 567999999999999******************************99865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.7e-10   6.5e-07      68     138 ..     407     490 ..     371     501 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 4.7e-10
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel............ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                 ++++  +vm+yi++  l d++ ++                ++++ e ++ lH +gi++ Dl ++N++v+ d+ ++liD+G +k 
  MMETSP1174-20130828|9269_1 407 TKNSVYLVMDYIKSVCLWDVMYDEDIqiprkqsteikrFWASNIFESLAYLHTKGIAYRDLKPENLLVSdDGYVILIDLGFSKA 490
                 5566789999999999999998866678888888776556789999**********************72556889****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:01.00
# Mc/sec: 905.45
//
Query:       MMETSP1174-20130828|9277_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 562.52
//
Query:       MMETSP1174-20130828|9276_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   55.4   0.0    6.7e-07   26.8   0.0    2.2  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    4.4e-14   49.2   0.0    2.6e-13   46.7   0.0    2.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    2.2e-12   44.5   0.4    1.4e-06   25.5   0.0    3.2  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    0.00026   17.9   0.0     0.0026   14.6   0.0    2.1  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
  ------ inclusion threshold ------
      0.024   11.5   0.0       0.19    8.5   0.0    2.0  2  TIGR01380 glut_syn: glutathione synthase
      0.062    9.3   0.0      0.099    8.6   0.0    1.3  1  TIGR01435 glu_cys_lig_rel: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.3e-09     9e-07      77     149 ..      38     125 ..      31     135 .. 0.85
   2 !   26.8   0.0   9.8e-10   6.7e-07     198     257 ..     222     284 ..     219     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.3e-09
   TIGR00768  77 NssqaienagdKllssalLakaglplpktlvag...............seeeakklieeigfPvvlKpvfGswGklvvlvedkqeaek 149
                 N   a   ++dK+++s+ L ++g+p    +++                +   + +l++++g P+vlKp+ G+ G +v ++     +e 
  MMETSP1174-20130828|9276_1  38 NGAGAARVCNDKVATSMVLDAHGVPNIPHILLLdpgnpftkayvppegNLMRLRALADKVGLPIVLKPLDGTGGFGVTKCACWRDVEG 125
                 55566778*****************755555555************9999999**************************976655555 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 9.8e-10
   TIGR00768 198 efrsNlarGgkae...kcelteeieelaikaakalgldvagiDllesedkgllvlEvNasvef 257
                 ++r Nl  G++ +   ++e+++e + +a  aa+a+g+ ++++D+   +++gl v+EvN+ v +
  MMETSP1174-20130828|9276_1 222 QWRHNLGLGAAMSldiPAEMDQELRVVASSAARAIGVRFCSVDVAHVQNEGLQVMEVNSGVMM 284
                 69*******9986555899***************************************98765 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.8e-16   2.6e-13     177     425 ..      10     267 ..       2     285 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 3.8e-16
   TIGR02068 177 rlsegslvqlGyGskqk..riqatltdktsiiaveiasDkeltkklLkaaGvP.vPe......Gtvvq........saeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakeesseviverfik.GrdhrlLvvgeklvavaervPahviGdgvhtieeLieqinkdPrrGdghdkvLtkirlDkvakavlekqGltldsvpakGrivllretanlstGg.vaiDrtDeihPenialavraakiiGLDiaGvDvvt 425
                 ++s+  ++q+   ++ +   i++   d  ++ a  +++Dk +t ++L+a+GvP +P+      G+           ++  +   a+++G+P+v+kPldG  G Gvt +   + ++e   +     +  +    f     ++r L v + +    +++ +h +Gdg + +  L+++  ++ +         +   + ++a    + + l    vpa+G++v+l+   nl  G  +++D   e+  e+  +a  aa++iG+  + vDv  
  MMETSP1174-20130828|9276_1  10 AMSKDWIIQISDPKTGRtsCIHGYTFDANGAGAARVCNDKVATSMVLDAHGVPnIPHillldpGNPFTkayvppegNLMRLRALADKVGLPIVLKPLDGTGGFGVT-KCACWRDVEGTVQSLFTRGYGIAASPFKAvVDEYRCLYVLGDVRVTYRKIRSHLVGDGISKLSVLVARAIEEALDPA------AAAGIAAAAEGFTKEAWL---RVPAEGEKVILQWRHNLGLGAaMSLDIPAEMDQELRVVASSAARAIGVRFCSVDVAH 267
                 555555666654443331157888889999999*******************97676222222332221112222234567789********************97.7899******************99999651689****9999999999*******************87666544322......222334444444444433...59****************9972589*****************************964 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.6e-06    0.0025      80     141 ..      41     117 ..      32     202 .. 0.73
   2 !   25.5   0.0     2e-09   1.4e-06     196     252 ..     221     280 ..     211     305 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.6e-06
   TIGR02144  80 eviiacgdKvfttlkLakagvPtPktivafdkea....a........l...klaeelGyPvvlKPveGsWGrlvskv 141
                  +   c+dKv+t++ L ++gvP    i+ +d+ +    a        +    la+++G P+vlKP +G  G  v+k 
  MMETSP1174-20130828|9276_1  41 GAARVCNDKVATSMVLDAHGVPNIPHILLLDPGNpftkAyvppegnlMrlrALADKVGLPIVLKPLDGTGGFGVTKC 117
                 56678*****************86666666654311111111111112222468999**********9988777665 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2e-09
   TIGR02144 196 eewrtntArGgkae...pvkvdeeveelavkaaeavggevvaiDivEskerGllvnEvnd 252
                  +wr n+ +G+  +   p+++d+e++ +a  aa a+g+ + ++D+   +++Gl v Evn 
  MMETSP1174-20130828|9276_1 221 LQWRHNLGLGAAMSldiPAEMDQELRVVASSAARAIGVRFCSVDVAHVQNEGLQVMEVNS 280
                 68********986444499****************************************7 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.9e-06    0.0026      96     180 ..      38     132 ..      30     151 .. 0.78
   2 ?    0.7   0.0     0.064        44     238     285 ..     234     280 ..     230     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.9e-06
   TIGR01205  96 sgvlaSalsmdKlltKlllkalglpvadyavlerkeeksee..aeke........kleklglpvivKpareGSSvGvskvkseeeleealeeafe 180
                 +g  a+ ++ dK++t ++l+a g+p+ ++++l    +  ++  +  e         ++k+glp++ Kp +     Gv+k+  + ++e +++  f 
  MMETSP1174-20130828|9276_1  38 NGAGAARVCNDKVATSMVLDAHGVPNIPHILLLDPGNPFTKayVPPEgnlmrlraLADKVGLPIVLKPLDGTGGFGVTKCACWRDVEGTVQSLFT 132
                 5677899***********************997654433332222223223244567899********************999999998887775 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.064
   TIGR01205 238 paelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285
                 + ++++e  ++++ +a  a +a+g r +  vD+   ++  + + E+N 
  MMETSP1174-20130828|9276_1 234 SLDIPAEMDQELRVVASSAARAIGVRFC-SVDVAHVQNEGLQVMEVNS 280
                 567888999999***********99965.59*999999899999**96 PP

>> TIGR01380  glut_syn: glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00027      0.19     146     173 ..      90     118 ..      84     139 .. 0.76
   2 ?    0.5   0.0     0.077        53     230     274 ..     222     266 ..     205     307 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00027
   TIGR01380 146 iraFleehg.divlkPLdgkgGegilrlk 173
                 +ra  ++ g  ivlkPLdg+gG g+ +  
  MMETSP1174-20130828|9276_1  90 LRALADKVGlPIVLKPLDGTGGFGVTKCA 118
                 556666665359************98764 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.077
   TIGR01380 230 evRgnlavGgrgeatelserdreiaaavapelkrrgllfvGiDvi 274
                 + R nl  G+       +e d+e+    +   ++ g+ f  +Dv 
  MMETSP1174-20130828|9276_1 222 QWRHNLGLGAAMSLDIPAEMDQELRVVASSAARAIGVRFCSVDVA 266
                 47999999999999999999999999999999999*******995 PP

>> TIGR01435  glu_cys_lig_rel: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00014     0.099     551     681 ..     146     273 ..     102     286 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00014
   TIGR01435 551 GteyrffvlddevkavllrvPanvtGdgkhtveelvaeknsdPlrGtdhrkPlekalgeeeklmlkeqgltidpekeqlvylrensnvstGGds..dmtdelddsykqlave.vkalgaavcGvdvPdkkdkat 681
                  +eyr + +  +v+   +++ + ++Gdg   +  lva   ++ l           a g       ke  l + p++ + v l+   n+  G     d+  e+d+  + +a + ++a+g + c vdv + ++++ 
  MMETSP1174-20130828|9276_1 146 VDEYRCLYVLGDVRVTYRKIRSHLVGDGISKLSVLVARAIEEALDPAAAAGIAAAAEG-----FTKEAWLRV-PAEGEKVILQWRHNLGLGAAMslDIPAEMDQELRVVASSaARAIGVRFCSVDVAHVQNEGL 273
                 689**98888999***********************9999888865554433333333.....345555544.45555555555555555543225************9999789***********98887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.63
# Mc/sec: 664.14
//
Query:       MMETSP1174-20130828|9275_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054    9.3   0.0        1.1    5.1   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0    0.0022         9     186     218 ..     264     296 ..     247     300 .. 0.86
   2 ?    5.1   0.0   0.00026       1.1     132     155 ..     359     381 ..     339     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0022
   TIGR00870 186 aclasesivsllsedpAdiltadslgntllhll 218
                 a ++ +++++  +e++ d++t  +lg tllh +
  MMETSP1174-20130828|9275_1 264 AMMGHADMLRWMLEQGIDVNTPNKLGETLLHYA 296
                 557899*************************76 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00026
   TIGR00870 132 italilAihkqnyeivklLlekga 155
                  t+l+lA++ +n+e vk Lle g 
  MMETSP1174-20130828|9275_1 359 VTPLHLAAM-NNLEAVKKLLEGGG 381
                 7******98.69********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.53
# Mc/sec: 1095.76
//
Query:       MMETSP1174-20130828|9279_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.76
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|9272_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-43  144.4   0.1    6.3e-43  144.1   0.1    1.1  1  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.1   1.5e-46   6.3e-43       2     130 .]       8     144 .]       7     144 .] 0.93

  Alignments for each domain:
  == domain 1    score: 144.1 bits;  conditional E-value: 1.5e-46
   TIGR03627   2 vitsgkrktaiaravireGkGrvrinkvpvelieielarlkilePlllae.dvakevDidvkvsGGGimgqaeaartaiarglveftg.......dkelkdaflayDrtllvnDvrrkepkklggkgarakrqksYr 130
                 v++ g++kta+a a  ++G+G +++n+ p+el+e+e++rlk  eP+ll++    +evDi ++v+GGG+++q  a+r+ ia++lv++ +        ke+kd+ +ayDrtllv D+rr e+kk+gg +ara++qksYr
  MMETSP1174-20130828|9272_1   8 VQVFGRKKTATAVAFCQKGRGLIKVNGCPIELLEPEILRLKTFEPVLLLGqAKFSEVDIRIRVKGGGFTAQIYAIRQCIAKSLVAYYQkyvdeaqKKEIKDVLMAYDRTLLVADPRRCESKKFGGPSARARYQKSYR 144
                 6788*******************************************9996789******************************99752222222689**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 613.11
//
Query:       MMETSP1174-20130828|9282_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   17.3   0.1     0.0037   15.2   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.11   4.6e+02      15      30 ..     138     153 ..     137     154 .. 0.87
   2 !   15.2   0.0   9.1e-07    0.0037       2      22 ..     159     179 ..     158     180 .] 0.91

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.11
   TIGR00756  15 rveeAlelfdeMkerg 30 
                 +++ A++++++++ +g
  MMETSP1174-20130828|9282_1 138 NWKRAVQYLKDLENKG 153
                 6899******998877 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 9.1e-07
   TIGR00756   2 tyntlisglckagrveeAlel 22 
                 +yn+ i+ +++a++++eA+ +
  MMETSP1174-20130828|9282_1 159 AYNACINVCGRAKQWKEAVGI 179
                 7*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 625.21
//
Query:       MMETSP1174-20130828|9285_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1646.56
//
Query:       MMETSP1174-20130828|9290_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 229.24
//
Query:       MMETSP1174-20130828|9291_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 729.82
//
Query:       MMETSP1174-20130828|9295_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 315.07
//
Query:       MMETSP1174-20130828|9292_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|9296_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 222.50
//
Query:       MMETSP1174-20130828|9294_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   37.8   0.5    4.1e-08   30.6   0.2    2.9  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.8e-10   38.0   0.4    1.9e-08   32.0   0.1    2.3  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    5.7e-08   29.4   0.0    7.9e-08   28.9   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.5e-06   23.6   0.1    3.4e-05   21.3   0.1    2.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    6.7e-06   23.8   0.0    0.00015   19.4   0.0    2.7  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.9e-05   21.9   0.3    9.8e-05   19.5   0.2    2.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    0.00067   17.0   0.1     0.0037   14.5   0.0    2.0  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    0.00069   16.9   0.1     0.0011   16.3   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
      0.001   16.5   0.1     0.0034   14.8   0.0    1.8  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0022   15.5   0.2     0.0062   14.0   0.1    1.9  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
     0.0024   15.1   1.0      0.031   11.4   0.7    2.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
     0.0053   13.7   0.2     0.0084   13.0   0.1    1.3  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0059   13.3   0.1     0.0097   12.6   0.1    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
      0.018   12.2   0.2      0.033   11.4   0.2    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      0.053   10.7   0.1      0.099    9.8   0.1    1.4  1  TIGR01500 sepiapter_red: sepiapterin reductase
      0.099    9.7   1.2       0.18    8.8   0.0    1.8  2  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.2   1.6e-10   4.1e-08       2      48 ..      69     115 ..      68     194 .. 0.82
   2 ?    3.7   0.0     0.026       6.7     171     188 ..     308     325 ..     298     328 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.6e-10
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea 48 
                 kvalvtGa+sGig+++a+el a Ga+v v++ + +  eaa +++ +a
  MMETSP1174-20130828|9294_1  69 KVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTA 115
                 9****************************999966555554443332 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.026
   TIGR01963 171 tgitanaicPgyvrtpLv 188
                   i + ++cP++v t ++
  MMETSP1174-20130828|9294_1 308 PSIEVASVCPAWVSTNII 325
                 568999*********986 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   7.4e-11   1.9e-08       4     141 ..      69     234 ..      66     247 .. 0.65
   2 ?   -4.0   0.0       6.8   1.8e+03     188     207 ..     276     295 ..     269     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 7.4e-11
   TIGR01289   4 ptviitgassglglaaakalvekg.kwhvvmacrdlekaekaaksl...............g..lpkdsytilkl.....dlasldsvrkfveqfres.grsldalvcnaavylpll........keplfsadgyelsvatnhlghfllsnllledlkksdekdkrliil 141
                 + +++tga+sg+g + a  l + g + hvv   r l+++e a  ++               g  l k+   + +l     d++ +d+v  + + f +  + +l+ l  na +++  +         +p  s++g++ls atn+lghfll++ll   l +s++   r++++
  MMETSP1174-20130828|9294_1  69 KVALVTGATSGIGYQLAEELFAMGaEVHVV--SRSLQRSEAAISRIvtavekreatarsdaGydLQKQCSHVGRLhpeeaDVSDMDAVGALGKAFTARpDARLNFLFLNAGIHYASAfpdtfwknWDPPCSPQGFDLSFATNYLGHFLLADLLTPLLLRSPS--SRVVMV 234
                 56799***************9999345555..56665555443332110010110000001311223322332223344499*************8642889********99865432222232247999***********************988887764..455555 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 6.8
   TIGR01289 188 kaykdsklcnmltvrelhrr 207
                  ay  skl+++l + +l r 
  MMETSP1174-20130828|9294_1 276 IAYGHSKLAQVLHTYKLQRH 295
                 68999999999999888775 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.1e-10   7.9e-08     411     533 ..      65     217 ..      58     239 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.1e-10
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava....................lkldvtdeeavkaafae.valayGGvdivvnnaGiavskpleeteleeWd.........lnldilatGyflvar 533
                  l ++valvtG++sGiG ++a  l + Ga v ++    ++ ea    +v    + +a a                     ++dv d +av a  ++  a+    ++ +  naGi  ++ + +t  ++Wd         l+++ +  G+fl+a+
  MMETSP1174-20130828|9294_1  65 ALQGKVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTAVEKREATArsdagydlqkqcshvgrlhpEEADVSDMDAVGALGKAfTARPDARLNFLFLNAGIHYASAFPDTFWKNWDppcspqgfdLSFATNYLGHFLLAD 217
                 5889**********************************9999999999988888888888899*************99999*********98765524666789**********************996333332222555666666666665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.3e-07   3.4e-05       2      41 ..      65     104 ..      64     245 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-07
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgisels 41 
                  l+GkvalvtGa +G+G  +a  l + Ga++  v++s + 
  MMETSP1174-20130828|9294_1  65 ALQGKVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQR 104
                 59****************************9988865332 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-07   0.00015       1      52 [.      71     122 ..      71     240 .. 0.86
   2 ?   -3.1   0.0       4.2   1.1e+03     170     185 ..     309     324 ..     297     325 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.8e-07
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaa 52 
                 alvtGa+ giG ++a++l + ga+v + +rs +++ ++++  +++  ++ a+
  MMETSP1174-20130828|9294_1  71 ALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTAVEKREAT 122
                 79************************99887665555555555444433333 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.2
   TIGR01830 170 nitvnavaPGfietdm 185
                 +i+v +v+P +++t++
  MMETSP1174-20130828|9294_1 309 SIEVASVCPAWVSTNI 324
                 69999******99985 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   3.8e-07   9.8e-05       3      45 ..      66     108 ..      64     257 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.8e-07
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksaagleel 45 
                 l+++v+lvtg +sg+g  l +   a ga v v+ +s ++ e+ 
  MMETSP1174-20130828|9294_1  66 LQGKVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAA 108
                 899******************************9998876654 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-05    0.0037       1     103 [.      66     178 ..      66     194 .. 0.59
   2 ?   -0.3   0.0       0.5   1.3e+02     188     238 ..     309     360 ..     294     376 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlc.eplsdvvtypaatredldetakl.........vealGrkvlarkadvrkleelravveegve.efGrldvvvanaGv 103
                 l+Gkval+tGa+ G G   a  l a Ga++ ++    +  +  ++  +++ e  + ta+             +G +   ++adv +++++ a  +   +    rl+ +  naG+
  MMETSP1174-20130828|9294_1  66 LQGKVALVTGATSGIGYQLAEELFAMGAEVHVVSRSlQRSEAAISRIVTAVEKREATARSdagydlqkqCSHVG-RLHPEEADVSDMDAVGALGKAFTArPDARLNFLFLNAGI 178
                 79**************************9977654312333344444445555555554311111000022222.334566677777776666554333034567777777776 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.5
   TIGR03971 188 girvnsihPtsvdtamiepeamrelfakree.aaraflpalpvsglvepedv 238
                  i v s+ P  v+t++i ++  ++ f+   +  + + + + +  +++++e v
  MMETSP1174-20130828|9294_1 309 SIEVASVCPAWVSTNIIPSDPLARGFMGFMAhSMSSGVRSSLCAAFLPAEGV 360
                 6999*************99987776653332022233445555555555555 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.3e-06    0.0011       1      47 [.      69     115 ..      69     138 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.3e-06
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek 47 
                 kvalvtGa+ GiG ++ae L + G +v v+    +   ++++++  +
  MMETSP1174-20130828|9294_1  69 KVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTA 115
                 89*************************99987766666665555443 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05    0.0034       2      48 ..      72     118 ..      71     135 .. 0.79
   2 ?   -1.5   0.0       1.2   3.1e+02     206     225 ..     394     414 ..     365     422 .. 0.61

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
   TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevae 48 
                 l+tG+t  iG +l+eel + g ev +++rs ++++++ +  ++ v++
  MMETSP1174-20130828|9294_1  72 LVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTAVEK 118
                 89******************************888777555544433 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.2
   TIGR01777 206 lilfaleneevsGv.vNataP 225
                 ++l++l+++ ++G+ +N+ aP
  MMETSP1174-20130828|9294_1 394 MVLQILTQTGLRGMfFNMLAP 414
                 445555555555542355555 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.4e-05    0.0062       1      35 [.      69     103 ..      69     194 .. 0.83
   2 ?   -2.4   0.0       2.6   6.7e+02     172     188 ..     309     325 ..     301     327 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.4e-05
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapne 35 
                 +valvtG++ GiG +++++l + G +v    ++ +
  MMETSP1174-20130828|9294_1  69 KVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQ 103
                 79**********************98765544433 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.6
   TIGR01829 172 gvtvnviaPGyiatemv 188
                 ++ v  ++P +++t+++
  MMETSP1174-20130828|9294_1 309 SIEVASVCPAWVSTNII 325
                 68899*********986 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.7   0.00012     0.031       2      50 ..      72     123 ..      71     197 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdr...adaeesvaairaqggna 50 
                 lvtga+ gig  +a +l a g e+ v  rs +   a+    v+a++ + ++a
  MMETSP1174-20130828|9294_1  72 LVTGATSGIGYQLAEELFAMGAEVHVVSRSLQrseAAISRIVTAVEKREATA 123
                 9***********************9988764310033344555555555554 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.3e-05    0.0084       3      53 ..      70     123 ..      68     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvl...hyrrsaeaasslaaelnaerans 53 
                 +alvtGa+  iG  +a++l + G  v +     +rs++a s+++  ++++ a +
  MMETSP1174-20130828|9294_1  70 VALVTGATSGIGYQLAEELFAMGAEVHVvsrSLQRSEAAISRIVTAVEKREATA 123
                 89*********************9886622246799999999999998877655 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   3.8e-05    0.0097       2      35 ..      70     103 ..      69     120 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrkts 35 
                  +lvtGat  +G +++++l ++G+ev+v+ r+  
  MMETSP1174-20130828|9294_1  70 VALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQ 103
                 68**************************999754 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013     0.033       1      57 [.      66     122 ..      66     140 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeav 57 
                 l++kva+vtg + gig  +   +   ga+v v+  +++ +e   ++i  +  k ea 
  MMETSP1174-20130828|9294_1  66 LQGKVALVTGATSGIGYQLAEELFAMGAEVHVVSRSLQRSEAAISRIVTAVEKREAT 122
                 689*******************999********999988888888887766666554 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00039     0.099       2      38 ..      70     102 ..      69     136 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00039
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRnd 38 
                 ++lvtGa  G+G +la+el       g  + +++R++
  MMETSP1174-20130828|9294_1  70 VALVTGATSGIGYQLAEELFA----MGAEVHVVSRSL 102
                 79****************988....344444444443 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00069      0.18       3      51 ..      72     119 ..      70     149 .. 0.87
   2 ?   -1.3   0.2       0.8   2.1e+02       7      21 ..     206     220 ..     205     224 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00069
   TIGR01746   3 lLTGAtGfLGaylleeLlrrsteakviClVR.akseehaleRLrealrsy 51 
                 l+TGAt  +G +l+eeL +    a+v+   R  +  e+a +R+ +a+++ 
  MMETSP1174-20130828|9294_1  72 LVTGATSGIGYQLAEELFAMG--AEVHVVSRsLQRSEAAISRIVTAVEKR 119
                 89******************8..778888887777789*****9999865 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.8
   TIGR01746   7 AtGfLGaylleeLlr 21 
                 At +LG +ll++Ll+
  MMETSP1174-20130828|9294_1 206 ATNYLGHFLLADLLT 220
                 899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.63
# Mc/sec: 986.78
//
Query:       MMETSP1174-20130828|9302_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 347.34
//
Query:       MMETSP1174-20130828|9301_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-43  147.5   0.0    1.3e-43  147.2   0.0    1.0  1  TIGR02636 galM_Leloir: galactose mutarotase


Domain annotation for each model (and alignments):
>> TIGR02636  galM_Leloir: galactose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   0.0   3.1e-47   1.3e-43     132     330 ..       2     204 ..       1     206 [. 0.91

  Alignments for each domain:
  == domain 1    score: 147.2 bits;  conditional E-value: 3.1e-47
   TIGR02636 132 evsvtytLtddnelkieyeattdkatvvnlTnHvYFNLegeeagsdveeHelqlnadkylpldeegiplgelkevkgtsfDfrkekklkeeflade....eqqlvkGyDhaflleketldlkkeaailtspdedlslevftnkpalqlytgnflagtpnrkgkkykdyaglalEtqvlPdsp.nhpewgdisl.ilkpgeeYksq 330
                 +v+ +ytL   n+l+++ +a+++kat+v+l +H YFNL+g+ ++ +v+ He+++ +d++ p+d+++ip+gel++v+g+  D+r ++ l++++ +++    + + + GyDh ++l+k t+   ++aa++++p    ++ vft+ pa+q+yt+nfl+g   + g +y   ++l+lEtq  P s  ++ ++gd  + i ++g+eY+++
  MMETSP1174-20130828|9301_1   2 TVTARYTL-IGNQLSLSMRAQSTKATPVSLAQHSYFNLAGH-HSGSVRTHEVTILSDTFTPVDDNLIPTGELRPVDGSVMDLRDSTVLGDRLDQHRlearDAESTTGYDHNYVLRKGTTLEPEHAATVHEPVTGRTMTVFTTAPAVQFYTANFLDGLEGKGGVSYPAQSALCLETQHAPSSIgKQGDLGDLAIrIIREGDEYSHT 204
                 58889999.679*****************************.8999****************************************9988887764222278999*************999***********************************************************9725568988654278999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 557.59
//
Query:       MMETSP1174-20130828|9307_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-16   55.3   2.3    7.7e-16   55.2   1.6    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    3.1e-12   43.3   0.8    3.1e-12   43.2   0.5    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
      6e-10   35.4   1.0    6.3e-10   35.4   0.7    1.0  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    9.3e-10   35.3   1.1    9.3e-10   35.3   0.8    1.0  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    4.7e-09   32.4   0.4    4.7e-09   32.4   0.3    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    1.1e-07   28.3   0.6    1.1e-07   28.3   0.4    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    1.3e-07   27.5   0.6    1.4e-07   27.4   0.4    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.1e-06   24.6   1.0    1.2e-06   24.5   0.7    1.0  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    2.9e-06   24.2   1.7    2.9e-06   24.2   1.2    1.0  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.1e-05   22.4   1.3    1.1e-05   22.4   0.9    1.0  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    1.8e-05   21.5   1.9    1.8e-05   21.5   1.3    1.0  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    0.00091   14.8   0.2    0.00091   14.8   0.1    1.0  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase


Domain annotation for each model (and alignments):
>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   1.6   2.3e-18   7.7e-16     260     309 ..       1      50 [.       1      51 [] 0.96

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 2.3e-18
   TIGR01647 260 lAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideeli 309
                 +A+Ga ++ak+kaiv++l+a+ e+a++++L sDktGtlt+ k+si +e+i
  MMETSP1174-20130828|9307_1   1 MAIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIKESI 50 
                 9*******************************************988776 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.5     9e-15   3.1e-12     239     285 ..       1      47 [.       1      51 [] 0.95

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 9e-15
   TIGR01116 239 lalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvak 285
                 +a+G+  mak++a+v +l  ++ +   tv+ sdktGtltt kms++k
  MMETSP1174-20130828|9307_1   1 MAIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIK 47 
                 699*****************************************997 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.7   1.8e-12   6.3e-10     311     356 ..       2      47 ..       1      50 [. 0.94

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.8e-12
   TIGR01524 311 akGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlek 356
                 a Ga +++k+k iv +l a+q++ +m +l +dktGtlt  k+ ++k
  MMETSP1174-20130828|9307_1   2 AIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIK 47 
                 78999************************************99886 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.8   2.7e-12   9.3e-10     191     231 ..       7      47 ..       1      51 [] 0.88

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.7e-12
   TIGR01494 191 gdkrlailvrslnaleelgkvdvilsDKTGTLTenkmelkk 231
                 ++++ +++v++l+al+e+++++v+ sDKTGTLT+ km++ k
  MMETSP1174-20130828|9307_1   7 TMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIK 47 
                 567789*******************************9987 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.3   1.4e-11   4.7e-09     293     339 ..       1      47 [.       1      51 [] 0.94

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.4e-11
   TIGR01522 293 lalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtk 339
                 +a+G   m+k+kaiv +l +++ + s+ v+ sdktGtlt+ +m++ k
  MMETSP1174-20130828|9307_1   1 MAIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIK 47 
                 5899999************************************9865 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.4   3.1e-10   1.1e-07     335     382 ..       2      49 ..       1      51 [] 0.92

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.1e-10
   TIGR01517 335 ayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgy 382
                 a +   + k +++v +L+a   + s t + sDktGtLt+ +ms++k  
  MMETSP1174-20130828|9307_1   2 AIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIKES 49 
                 566778**************************************9865 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4     4e-10   1.4e-07     327     370 ..       1      44 [.       1      50 [. 0.95

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4e-10
   TIGR01523 327 mavgakvmvkrrvivrklealealgavtdicsdktgtltqgkml 370
                 ma+ga +m+k + iv +l al+ + ++t + sdktgtlt  km 
  MMETSP1174-20130828|9307_1   1 MAIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMS 44 
                 99****************************************94 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.7   3.5e-09   1.2e-06     319     362 ..       2      45 ..       1      49 [. 0.93

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.5e-09
   TIGR01106 319 tltakrlarknclvknleavetlgstsvicsdktgtltqnrmtv 362
                 ++ a  +a++  +v +l a++ + s +v+ sdktgtlt  +m++
  MMETSP1174-20130828|9307_1   2 AIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSI 45 
                 577899************************************87 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   1.2   8.4e-09   2.9e-06     223     269 ..       2      48 ..       1      51 [] 0.92

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.4e-09
   TIGR01525 223 lvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdv 269
                 +++ g++ak+  ++   +al+++a+++++  DKTGTLT+ k+++ + 
  MMETSP1174-20130828|9307_1   2 AIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIKE 48 
                 578999************************************99875 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.9   3.2e-08   1.1e-05     236     282 ..       2      48 ..       1      51 [] 0.93

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.2e-08
   TIGR01511 236 lvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtev 282
                 ++++g++ak+  ++    al+++a+++++  DKTGTLT+ k+++++ 
  MMETSP1174-20130828|9307_1   2 AIGAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSIIKE 48 
                 6899***************************************9876 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.3   5.3e-08   1.8e-05     211     253 ..       4      46 ..       1      50 [. 0.90

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.3e-08
   TIGR01512 211 aisaaarkGilikggavlealakvktvalDKTGTLTkGklkvs 253
                 + ++ a++  ++   ++l ++a+++ +  DKTGTLT+ k+++ 
  MMETSP1174-20130828|9307_1   4 GAGTMAKHKAIVTHLTALQEIASMTVLNSDKTGTLTTAKMSII 46 
                 567899********************************99886 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.7e-06   0.00091     348     383 ..      15      50 ..       6      51 .] 0.80

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.7e-06
   TIGR01652 348 vrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsi 383
                 v  ++  +e+  +  + SDKTGTLT+ km++ k si
  MMETSP1174-20130828|9307_1  15 VTHLTALQEIASMTVLNSDKTGTLTTAKMSIIKESI 50 
                 55556667888889999*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.77
# Mc/sec: 87.42
//
Query:       MMETSP1174-20130828|9305_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-11   41.5   0.0    2.7e-11   41.1   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      3e-08   30.7   0.0      5e-08   30.0   0.0    1.3  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    8.5e-08   29.6   0.0    1.2e-07   29.1   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.9e-07   27.9   0.0    4.9e-07   27.6   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.1e-05   23.1   0.0    1.4e-05   22.7   0.0    1.1  1  TIGR00740 TIGR00740: putative methyltransferase
    2.6e-05   21.6   0.0    4.2e-05   20.9   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.9e-05   21.3   0.0    3.9e-05   20.9   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.9e-05   21.3   0.0    4.2e-05   20.8   0.0    1.1  1  TIGR00477 tehB: tellurite resistance protein TehB
    0.00021   18.9   0.0    0.00038   18.1   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00023   18.6   0.0    0.00028   18.3   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    0.00052   17.4   0.0    0.00072   16.9   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0015   15.0   0.0     0.0019   14.6   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0027   14.9   0.0     0.0041   14.2   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0038   14.9   0.0      0.007   14.0   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0048   13.8   0.0     0.0071   13.3   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
      0.005   13.7   0.1     0.0064   13.3   0.0    1.1  1  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
     0.0074   13.7   0.1      0.012   13.0   0.1    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW
     0.0079   13.4   0.0      0.021   12.0   0.0    1.5  2  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
  ------ inclusion threshold ------
      0.013   13.6   0.0      0.022   12.9   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.3e-13   2.7e-11      27     132 ..      12     119 ..       2     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.3e-13
   TIGR02021  27 srvrqtvreGreamrekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle......gkfDavvalDvlihYp 132
                 +++++t+ + re +   ll+ + +   +G +v+D GCG G     l  r  +v+++Dis klve+ar++  k+    n +F  +dl  ++      g  D  v+ +vli   
  MMETSP1174-20130828|9305_1  12 DEIQSTIDDDREGV---LLQTMDEYICAGDQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAKAG-LANATFLQGDLAHVNltkkgvGLCDFAVCANVLISPE 119
                 56777777777665...45555555799***************************************9999998.589*******987643111235578899999988654 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.3e-10     5e-08     292     353 ..      35      96 ..      17     118 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.3e-10
   TIGR00479 292 qgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngianveflageleev 353
                    ++v+D  cGvG +   l  +  +v+g+++ +++ve a+r   + g+an++fl+g+l +v
  MMETSP1174-20130828|9305_1  35 CAGDQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAHV 96 
                 45799*****************************************************9886 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.5e-10   1.2e-07      47     148 ..      34     139 ..      10     146 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.5e-10
   TIGR01983  47 kleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeee..kesfDvvlamEvlEHva..dleeilkecaellkpggi 148
                   +g +v+D GcG G    +l+ +  +vtgiD+s++l+evA+   +k +l++  + + ++ +++ ++      D  ++ +vl   +  + ++il+++ ++l+ gg 
  MMETSP1174-20130828|9305_1  34 ICAGDQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAHVNLTKkgVGLCDFAVCANVLISPEpfTRQAILRNLHAHLRLGGY 139
                 345899*********************************************9999999998776554114567888888887544311345566666666666665 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.3e-09   4.9e-07      23     130 ..      26     140 ..      12     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 2.3e-09
   TIGR02072  23 LlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekks...fDlivSnlalQWlddl..sevlaelarvlkpgGll 130
                 Ll+ ++e+  +   +v+d+GcG G +  al+ r  ++  + +Dis +  e+a+++       n +f++gd+ +++l kk    +D+ v++ +l   + +  +++l++l+ +l+ gG+ 
  MMETSP1174-20130828|9305_1  26 LLQTMDEYI-CAGDQVIDFGCGVGKYIPALSMRCGHV--TGIDISRKLVEVARREGAkaglaNATFLQGDLAHVNLTKKGvglCDFAVCANVLISPEPFtrQAILRNLHAHLRLGGYC 140
                 889999986.66789**************99998877..**************998899****************9999878888888887775555442234666666666666665 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   6.5e-08   1.4e-05      47     190 ..      30     172 ..       4     188 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 6.5e-08
   TIGR00740  47 aerivtpkslvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkaykaaipvevlcndireveikeasavvlnf.....vlqflepeereallkkiyeglnlnGvlvl.sekisfedakldkllielyydfkranGysel 190
                  ++++ ++ +v d+Gc  G ++ ++  +  +    + gid s+ ++e ar++ ++   a    +l++d+ +v++ +  +    f     vl   ep  r+a+l+ ++  l l+G  +l    + +   ++++     + +++ra+G  e+
  MMETSP1174-20130828|9305_1  30 MDEYICAGDQVIDFGCGVGKYIPALSMRCGH----VTGIDISRKLVEVARREGAKAGLA-NATFLQGDLAHVNLTKKGVGLCDFavcanVLISPEPFTRQAILRNLHAHLRLGGYCMLiVPAVPSAQLIIKRH-A-EWVQYRRAQGIKEN 172
                 455677899****************999999....99************9987665544.679***********99887666662221245556899*****************7554055555655555554.3.46789999998776 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.9e-07   4.2e-05      83     150 ..      33      96 ..      22     119 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.9e-07
   TIGR03534  83 elkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdllea 150
                 ++   +  +v+D g+G G    al  ++   +v+++Dis++ ++var+  ++ gl++++fl++dl + 
  MMETSP1174-20130828|9305_1  33 YICAGD--QVIDFGCGVGKYIPALSMRC--GHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAHV 96 
                 454555..8**********999999886..5799******************************9643 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.8e-07   3.9e-05      39     104 ..      36     100 ..       5     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.8e-07
   TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfed 104
                 ++++v+D  +G G+ + +l+ +   +vtg+D+s +++eva++   +   an++f+++d  ++ ++ 
  MMETSP1174-20130828|9305_1  36 AGDQVIDFGCGVGKYIPALSMRC-GHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAHVNLTK 100
                 7899************9999877.89***************9998887789******998887765 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   4.2e-05      75     180 ..      38     149 ..      29     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2e-07
   TIGR00477  75 cktldlGcGqGrnslylslaGydvdavdkneasiasveeikekenldlrtavy.dinaaalded....ydfilstvvllfleaervpeiianmkehtkpGGyn.livaamdt 180
                  +++d+GcG G+    ls+    v+ +d + + +   ++  +k  l   t +  d+  ++l ++     df +++ vl+  e  +   i++n+++h + GGy  liv a+ +
  MMETSP1174-20130828|9305_1  38 DQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAKAGLANATFLQgDLAHVNLTKKgvglCDFAVCANVLISPEPFTRQAILRNLHAHLRLGGYCmLIVPAVPS 149
                 5799***************************99999999999999986655433888888887644447*********************************7368888765 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06   0.00038      18      77 ..      35      95 ..      19     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-06
   TIGR00537 18 lknddvleiGaGtGlvairlkekgkkivatdinPfavkllken.aklnnveldvlesdlfe 77
                  +d+v++ G G G    +l+ ++  ++++di+   v +++++ ak    +  +l++dl++
  MMETSP1174-20130828|9305_1 35 CAGDQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREgAKAGLANATFLQGDLAH 95
                46899********************************99976527888899********96 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-06   0.00028      43     107 ..      34      95 ..      14     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.3e-06
   TIGR02752  43 vqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgname 107
                 + +g++++d  cg + +  al+      g+v+g+d+s+++++v+++  ++a l n +++ g+  +
  MMETSP1174-20130828|9305_1  34 ICAGDQVIDFGCGVGKYIPALSMRC---GHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAH 95 
                 6789****************99865...79************************99999997655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.3e-06   0.00072     150     209 ..      27      85 ..      23     136 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.3e-06
   TIGR00406 150 lellesldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsd 209
                 l+++++    +++viD+GcG G   i al +    v+++Di    ve ar+   + ++ +
  MMETSP1174-20130828|9305_1  27 LQTMDEYICAGDQVIDFGCGVGKY-IPALSMRCGHVTGIDISRKLVEVARREGAKAGLAN 85 
                 889999999*************75.89999999****************98876666554 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.7e-06    0.0019     261     325 ..      13      77 ..       5     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.7e-06
   TIGR04074 261 ekkvslaeqRleavvaalres..garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrr 325
                 e + ++++ R  ++++++ e      +v+D+GcG gk + aL    +  +++g+d+s + +e+a+r 
  MMETSP1174-20130828|9305_1  13 EIQSTIDDDREGVLLQTMDEYicAGDQVIDFGCGVGKYIPALS--MRCGHVTGIDISRKLVEVARRE 77 
                 556778888999999999885224579*************995..6789*********999999875 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-05    0.0041      29     102 ..      36     114 ..      24     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-05
   TIGR00755  29 esdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkle..leekleviegDalkldleefakke...kvvsNl 102
                 ++d+v+  G+G+G+   +l  ++ +v++i i ++l+e  r++      ++ + ++gD  +++l+++       +v++N+
  MMETSP1174-20130828|9305_1  36 AGDQVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAkaGLANATFLQGDLAHVNLTKKGVGLcdfAVCANV 114
                 5799***********************************999885667899999*********9666443557788885 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.2e-05     0.007      73     136 ..      30      92 ..      15     101 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-05
   TIGR00080  73 Le..lkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegD 136
                 ++  + ag++v++ G+G G     l++  g+   v +i+  ++Lve a+r+  k +l n +  +gD
  MMETSP1174-20130828|9305_1  30 MDeyICAGDQVIDFGCGVGKYIPALSMRCGH---VTGIDISRKLVEVARREGAKAGLANATFLQGD 92 
                 4455889************999999998888...********************999999998888 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.3e-05    0.0071     114     175 ..      35      94 ..      13     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.3e-05
   TIGR00536 114 pl.khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnll 175
                 ++ ++++D g+G G    al++     +v+++Dis + ++va++   k +l +   ++q++l 
  MMETSP1174-20130828|9305_1  35 CAgDQVIDFGCGVGKYIPALSMRCG--HVTGIDISRKLVEVARREGAKAGLAN-ATFLQGDLA 94 
                 5557899*******99999998887..9************************6.999**9985 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     3e-05    0.0064     236     297 ..      39     100 ..      28     134 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-05
   TIGR02085 236 elwdlfcGvGGfglhcaapdikltGieieseaiaaakrsakelGlenlsfaaldsakfaeak 297
                 ++ d+ cGvG +    + +  ++tGi+i+ + +  a+r  ++ Gl n +f   d a++  +k
  MMETSP1174-20130828|9305_1  39 QVIDFGCGVGKYIPALSMRCGHVTGIDISRKLVEVARREGAKAGLANATFLQGDLAHVNLTK 100
                 788999******999999999*****************************999988876555 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.4e-05     0.012       5      56 ..      28      78 ..      25      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.4e-05
   TIGR02081  5 eailelipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarG 56
                +++ e+i ag +v+D GcG G+ + +l   +  + +G++i+ + v  +   G
  MMETSP1174-20130828|9305_1 28 QTMDEYICAGDQVIDFGCGVGKYIPALS-MRCGHVTGIDISRKLVEVARREG 78
                667899*********************5.55557789999998887666655 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   9.8e-05     0.021      20      78 ..      40      96 ..      33     109 .. 0.90
   2 ?   -2.0   0.0       1.9   4.1e+02     113     179 ..     125     191 ..     120     197 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.8e-05
   TIGR00091 20 vleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglkNlkvlcgdakkl 78
                v++ GcG G+++ +l+       + Gi i  ++v  a  +  k gl N   l+gd  ++
  MMETSP1174-20130828|9305_1 40 VIDFGCGVGKYIPALSMRCGH--VTGIDISRKLVEVARREGAKAGLANATFLQGDLAHV 96
                79***********99998765..66******************************8655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.9
   TIGR00091 113 kflkevaevLkkgGvielktDveklfedmlkvlsendlfeeiskeadlnnsplkeariiteleqrvl 179
                  +l +++  L+ gG   l+    + ++  +k+ +e  ++ + +  ++  + ++ e+r++ ++++ ++
  MMETSP1174-20130828|9305_1 125 AILRNLHAHLRLGGYCMLIVPAVPSAQLIIKRHAEWVQYRRAQGIKENREVEALEQRSVKDMKIGIY 191
                 5677777778888888888777778888888888888888877777777777777777777766555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001     0.022      19      83 ..      36      98 ..      23     147 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.0001
   TIGR02469 19 kgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaee 83
                +gd+++D G+G G     ++ ++++  v++i+ + + +e+ ++  ++ g+ n   ++gd ++++ 
  MMETSP1174-20130828|9305_1 36 AGDQVIDFGCGVGKYIPALSMRCGH--VTGIDISRKLVEVARREGAKAGLANATFLQGDLAHVNL 98
                5899*********987767766666..99*****************************9884433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|9306_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1108.09
//
Query:       MMETSP1174-20130828|9310_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 517.40
//
Query:       MMETSP1174-20130828|9316_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|9312_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.9   9.0       0.11   10.2   0.6    3.0  3  TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family


Domain annotation for each model (and alignments):
>> TIGR03745  conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   2.7e-05      0.11      33      99 ..     111     177 ..      86     182 .. 0.89
   2 ?   -0.7   0.1     0.064   2.6e+02      84      97 ..     199     212 ..     191     230 .. 0.67
   3 ?    0.1   0.1     0.038   1.5e+02      75      93 ..     342     360 ..     311     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.7e-05
   TIGR03745  33 lqtlknylydgllllgLliaaiaflgvavaalatyaeiregkatWgdlgaivvvGvvllvviiwllt 99 
                 +  +  +++  l + gLl +a  ++++++ ++  ++ i ++    ++l    ++ v+l+ ++i l++
  MMETSP1174-20130828|9312_1 111 IPAFTDLVQTTLAMGGLLFVAPSVYQMCRGSVVIFSAILTQTWLKKNLECYQIIAVFLVLIAIILVG 177
                 55677788889999**************************9888899****************9997 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.064
   TIGR03745  84 vvvGvvllvviiwl 97 
                  ++G +l+vv+ ++
  MMETSP1174-20130828|9312_1 199 QIIGLLLIVVGQFI 212
                 45666666665443 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.038
   TIGR03745  75 atWgdlgaivvvGvvllvv 93 
                   W+++  +  +G ++lv 
  MMETSP1174-20130828|9312_1 342 EAWTNFSFLELIGFFILVW 360
                 57***********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 969.61
//
Query:       MMETSP1174-20130828|9320_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 331.32
//
Query:       MMETSP1174-20130828|9319_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 520.34
//
Query:       MMETSP1174-20130828|9321_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1296.20
//
Query:       MMETSP1174-20130828|9318_1  [L=1751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   12.5   0.1      0.015   11.8   0.0    1.3  1  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.8e-06     0.015     320     375 ..     280     336 ..     273     338 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-06
   TIGR03300 320 gkyvvvgDfeGylhlLdredGslvarakvdgsgi.aaapvvlgdkllvqtrdGklaa 375
                 ++ ++++ + Gyl+l+d  +G+ + ra++++ +i +++p++ g  l++++r+G++  
  MMETSP1174-20130828|9318_1 280 QGILYMVSKMGYLYLFDVYSGKCLYRAQITRGTIfVTTPLASGGILAITARQGQVLR 336
                 5667888899******************9887761567999999999******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.18s 00:00:01.10 Elapsed: 00:00:00.98
# Mc/sec: 2358.30
//
Query:       MMETSP1174-20130828|9325_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|9327_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   83.7   0.0    3.2e-24   83.4   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    2.2e-12   45.0   0.0    2.6e-12   44.8   0.0    1.0  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    1.4e-09   35.6   0.0    1.8e-09   35.2   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.3e-05   22.0   0.1    5.1e-05   20.9   0.1    1.6  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
  ------ inclusion threshold ------
       0.02   12.2   0.0      0.041   11.2   0.0    1.5  2  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   3.9e-27   3.2e-24       6     171 ..      47     214 ..      38     227 .. 0.92

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 3.9e-27
   TIGR03634   6 GikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrk.kkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGsiiedk.ytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvas 171
                 G +++ gvvl ad+r s g++ +++ ++K+ +++d+i +  +Gs +d q+lv++++ e+   el+++   i+vk +a l+ +  + ++     v++l  G d+ +g ++y++ + Gs++e + ++++GsGs++ +g   + ++++++ ee    + +a++ a++ D  s
  MMETSP1174-20130828|9327_1  47 GNHTHGGVVLGADSRTSRGTFASNRFANKISTLSDRIVVGRSGSAADSQHLVNSIRRELADLELESGgAAINVKLAAGLVRHHCYTRRD-QISVSMLTCGWDDvKGGQIYQVPQGGSLLEANsFAVAGSGSQYITGWCGSAWKHGMTREECAGFVEHALRQAVDLDCQS 214
                 667889*****************************************************999999862689************999988.89999******99899**************999****************************************999887 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.2e-15   2.6e-12       2     184 ..      35     217 ..      34     223 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.2e-15
   TIGR03690   2 aphgttivalay....kgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGGp 184
                 ++ gttiva  +    +gGv+l  d r+++G++ ++r  +k+ +  +  +vg +G+a+ + +lv+  + el+  e   G   +++ k    a +vr+   +    + v  l  G+d   + G+i+     g+  e ++++  GsGs +  g     +k+++++e+ +  + +al  a d d  +  p
  MMETSP1174-20130828|9327_1  35 VSMGTTIVAARWgnhtHGGVVLGADSRTSRGTFASNRFANKISTLSDRIVVGRSGSAADSQHLVNSIRRELADLELESGG-AAINVKL--AAGLVRHHCYTRRDQISVSMLTCGWDDV-KGGQIYQVPQGGSLLEANSFAVAGSGSQYITGWCGSAWKHGMTREECAGFVEHALRQAVDLDCQSSPP 217
                 6789*****987444479********************************************************976654.4455443..4789****9999999**999******75.579***9999999**********************************************999876655 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.2e-12   1.8e-09      33     198 ..      46     210 ..      18     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.2e-12
   TIGR03633  33 vGiktkegvvlivdkrits.klleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrl.tYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavai.Gagrekvlellekeykedlsldeaielalkalakalee 198
                  G +t+ gvvl +d r+    + +++  +ki ++ d++++  +G +aD++ l++  r+e     l + + +i+v+  a  v      yt+   +    v++l +G dd  + ++++   +G lle ++ a+ G+g++ ++    + +k+ ++ +e+  +  +al +a++ 
  MMETSP1174-20130828|9327_1  46 WGNHTHGGVVLGADSRTSRgTFASNRFANKISTLSDRIVVGRSGSAADSQHLVNSIRRELADLELeSGGAAINVKLAAGLVRH--HCYTRRDQI---SVSMLTCGWDDVkGGQIYQVPQGGSLLEANSFAVaGSGSQYITGWCGSAWKHGMTREECAGFVEHALRQAVDL 210
                 3667899*******998651666777789*************************99988665555156788999988888865..479988765...7********997579*************99988769***********************99999999988874 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.2e-08   5.1e-05       1      78 [.      39     119 ..      39     216 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 6.2e-08
   TIGR03692   1 ttilavr....kngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgnlaraavel 78 
                 tti+a r     +g vv+++d + + g+    + a+k+ +l  +++++G +Gs+ad+  L++ + ++l + + +   aa+++
  MMETSP1174-20130828|9327_1  39 TTIVAARwgnhTHGGVVLGADSRTSRGTFASNRFANKISTLS-DRIVVGRSGSAADSQHLVNSIRRELADLELESGGAAINV 119
                 78888872222345689*********************9996.78*********************9999887777777653 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         1   8.6e+02      51      66 ..      74      89 ..      66     104 .. 0.70
   2 ?   11.2   0.0     5e-05     0.041     129     191 ..     147     209 ..     133     230 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1
   TIGR03691 51 hkiselydriafaavG 66
                +kis l dri     G
  MMETSP1174-20130828|9327_1 74 NKISTLSDRIVVGRSG 89
                6888888888665555 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5e-05
   TIGR03691 129 eeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaese 191
                 ++ +  q+y++   Gs+ + + f v G  ++ i+    ++++++++ +++ +   +al++ ++
  MMETSP1174-20130828|9327_1 147 DDVKGGQIYQVPQGGSLLEANSFAVAGSGSQYITGWCGSAWKHGMTREECAGFVEHALRQAVD 209
                 5667889******************************************99999999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.94
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|9330_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.60
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|9332_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-05   19.0   0.0    7.2e-05   18.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0041   14.4   0.0     0.0064   13.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.5e-08   7.2e-05      87     154 ..      15      88 ..      10      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.5e-08
   TIGR03903  87 qvLDalaaahdaGvvhRDLkPqnimvsa...adveshak.vLDFGigaLlpgvedadeatltrt..tevlGsPa 154
                  ++Da+a+  + G++h DLk +n+++      d + ha  + DFG + + p    a   +l r+  te + sP+
  MMETSP1174-20130828|9332_1  15 RIVDAVATLKEGGIIHFDLKCENVLLRSdpsVDSSAHAVcIGDFGESCVTPARSRASGVRLQRArgTECVQSPE 88 
                 689**********************96522246677775366*********99998877765442278888885 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.1e-06    0.0064      94     126 ..      11      43 ..       4      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-06
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkdd 126
                 ++++++ ++v++l + gi+h Dl  +N+++++d
  MMETSP1174-20130828|9332_1  11 DVFRRIVDAVATLKEGGIIHFDLKCENVLLRSD 43 
                 689999***********************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 992.92
//
Query:       MMETSP1174-20130828|9334_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|9336_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   13.6   0.0     0.0056   13.4   0.0    1.0  1  TIGR00075 hypD: hydrogenase expression/formation protein HypD


Domain annotation for each model (and alignments):
>> TIGR00075  hypD: hydrogenase expression/formation protein HypD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-06    0.0056     314     352 ..      28      66 ..       6      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-06
   TIGR00075 314 adkedkacicgevLkGkakPkdCplfgtvCtPenpvGac 352
                 +   +++  +ge ++Gk++ + C+++ + C+P+  +G++
  MMETSP1174-20130828|9336_1  28 KAGVTHETGSGEAVHGKHQAHTCEALDKRCKPKGQMGTL 66 
                 1222233579************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 214.87
//
Query:       MMETSP1174-20130828|9337_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 247.06
//
Query:       MMETSP1174-20130828|9338_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 291.05
//
Query:       MMETSP1174-20130828|9339_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.7   0.1     0.0028   14.5   0.1    1.0  1  TIGR00212 hemC: porphobilinogen deaminase


Domain annotation for each model (and alignments):
>> TIGR00212  hemC: porphobilinogen deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   6.9e-07    0.0028     145     206 ..       7      69 ..       3      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.9e-07
   TIGR00212 145 GNvdtRlkkleegeldaiiLaaAGlkRlgle.dvitevldpeellpavgqGalavevrkddee 206
                 G ++ R+++ ++++++  +La+ G +R+++e ++    l++   +  ++q ++++  r+dd +
  MMETSP1174-20130828|9339_1   7 GRLKARMQQNKSSSVEEAFLAVQGAYRVEKErSAFIAELSSRISPGWIAQEVVGIMGRHDDLN 69 
                 66789**************************86777779999999*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9341_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|9340_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|9345_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1174-20130828|9344_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 953.25
//
Query:       MMETSP1174-20130828|9346_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.4   0.2       0.05   10.0   0.0    2.6  3  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.021        85     209     235 ..      46      72 ..      36      74 .. 0.86
   2 !   10.0   0.0   1.2e-05      0.05     287     391 ..     103     197 ..      89     209 .. 0.79
   3 !    0.4   0.1    0.0095        39     463     496 ..     285     318 ..     251     321 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.021
   TIGR00368 209 aGghnllllGPPGsGktllakrlqgll 235
                  G+ n+lllG P + k    k ++ + 
  MMETSP1174-20130828|9346_1  46 RGDINVLLLGDPSTAKSQFLKFIEKVS 72 
                 5889************99888887665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 1.2e-05
   TIGR00368 287 kPGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGhygdkitdnrcspqqierylkklsgplldridlsvevrll 391
                 + G + la  G+  +de   ++ +   a+ e +e++ is+++a  + +  +r  ++aa np   G y+d     +++ ++i      l +++l r+dl   vr +
  MMETSP1174-20130828|9346_1 103 EGGAMVLADGGICCIDEFDKMREQDRVAIHEAMEQQTISVAKAGITTVLNSRTSVLAAANPV-FGRYDD----LKSAAENI-----DLMSTILSRFDLIFIVRDI 197
                 568899******************************************************97.688877....22223332.....2445556666666555555 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.0095
   TIGR00368 463 lsvraldrilkvartiadlkeeekisrehlaeai 496
                 ++vr l+ +++++  +a ++ + +++++h++ea+
  MMETSP1174-20130828|9346_1 285 VTVRQLEALVRLSESLAKMELNGTVQQRHVKEAL 318
                 6789999999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 1741.40
//
Query:       MMETSP1174-20130828|9343_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.70
# Mc/sec: 829.65
//
Query:       MMETSP1174-20130828|9350_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|9351_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|9352_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|9354_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|9356_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-20   71.6   0.0    1.2e-20   71.5   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    3.3e-16   55.9   0.0    3.4e-16   55.9   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.7e-14   50.2   0.0    4.7e-14   50.2   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.9e-11   40.8   0.0    2.9e-11   40.8   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.5e-11   40.9   0.0    3.5e-11   40.9   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.1e-10   38.3   0.0    1.1e-10   38.3   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.5e-10   35.5   0.0    9.5e-10   35.5   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.2e-09   35.7   0.0    1.3e-09   35.7   0.0    1.0  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.4e-09   35.8   0.0    1.6e-09   35.6   0.0    1.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.1e-09   35.0   0.0    2.2e-09   34.9   0.0    1.0  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.3e-09   34.9   0.0    2.3e-09   34.9   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.7e-09   33.6   0.0    2.7e-09   33.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.1e-09   34.5   0.0    3.1e-09   34.5   0.0    1.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.5e-09   33.5   0.0    3.5e-09   33.5   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.5e-09   34.2   0.0      5e-09   34.0   0.0    1.0  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    4.9e-09   33.6   0.0    4.9e-09   33.6   0.0    1.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.8e-09   33.3   0.0    7.6e-09   33.2   0.0    1.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.8e-09   33.1   0.0    7.8e-09   33.1   0.0    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      1e-08   33.0   0.0      1e-08   33.0   0.0    1.0  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      1e-08   32.7   0.0      1e-08   32.6   0.0    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.8e-08   31.8   0.0      2e-08   31.7   0.0    1.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.4e-08   31.0   0.0    3.5e-08   30.9   0.0    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.1e-08   29.7   0.0    5.1e-08   29.7   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-07   29.5   0.0      1e-07   29.5   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.3e-07   28.8   0.0    1.4e-07   28.7   0.0    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.5e-07   27.9   0.0    1.5e-07   27.9   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      2e-07   28.2   0.0      2e-07   28.2   0.0    1.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.2e-07   27.4   0.0    2.4e-07   27.2   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.1e-07   27.2   0.0    3.1e-07   27.2   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.3e-07   28.0   0.0    3.3e-07   28.0   0.0    1.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.6e-07   27.9   0.0    3.6e-07   27.9   0.0    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.5e-07   27.0   0.0    4.7e-07   27.0   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      1e-06   25.9   0.0      1e-06   25.9   0.0    1.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.3e-06   25.8   0.0    1.3e-06   25.8   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.3e-06   25.0   0.0    1.4e-06   24.9   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.5e-06   25.6   0.0    1.5e-06   25.6   0.0    1.0  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.6e-06   25.7   0.0    1.6e-06   25.7   0.0    1.0  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.7e-06   25.7   0.0    1.7e-06   25.7   0.0    1.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.9e-06   24.6   0.0    1.9e-06   24.6   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.2e-06   25.1   0.0    2.4e-06   25.1   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.5e-06   24.1   0.0    2.5e-06   24.1   0.0    1.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.6e-06   25.0   0.0    2.9e-06   24.8   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      3e-06   24.7   0.0      3e-06   24.7   0.0    1.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.1e-06   23.0   0.0    5.2e-06   23.0   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.2e-06   23.4   0.0    6.6e-06   23.3   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    8.2e-06   23.0   0.0    9.3e-06   22.9   0.0    1.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-05   21.9   0.0    2.3e-05   21.9   0.0    1.0  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.6e-05   20.8   0.0    2.7e-05   20.7   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.3e-05   20.9   0.0    4.3e-05   20.9   0.0    1.0  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    0.00025   17.6   0.0    0.00026   17.6   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    0.00041   15.1   0.0    0.00041   15.1   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
     0.0032   13.5   0.0     0.0032   13.5   0.0    1.0  1  TIGR00630 uvra: excinuclease ABC subunit A
     0.0036   12.6   0.0     0.0036   12.6   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0058   13.4   0.1     0.0058   13.4   0.0    1.0  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.012   10.8   0.0      0.012   10.8   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.6e-22   1.2e-20     165     218 ..       2      55 ..       1      56 [] 0.97

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 1.6e-22
   TIGR00955 165 kglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgkt 218
                 +g+SgG+rkR+ ++ e++ dP+lLf+DEPTsGLDs++++ +v ++k +a+kg  
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 8***************************************************86 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   4.6e-18   3.4e-16     901     955 ..       3      56 .]       1      56 [] 0.95

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 4.6e-18
   TIGR00956 901 GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqai 955
                 G++  qRkr+ +g+e+vA P +llFlDePtsGLDs t++ +v  ++ +a++G  i
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADP-SLLFLDEPTSGLDSATSYDLVFAMKAMANKGANI 56 
                 88899***************.99*****************************876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   6.4e-16   4.7e-14     124     175 ..       3      54 ..       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 6.4e-16
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegv 175
                   sgG+r+r+++++ ++a+P++lfLDEPt+GLD+ t   +   ++++ ++g 
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 68**********************************9999999998888876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   3.9e-13   2.9e-11     457     507 ..       2      52 ..       1      56 [] 0.93

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 3.9e-13
   TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaeg 507
                 +g+SgGqr+R+ +   ++ d +ll lDEPt+ LD++t  +++ a++++a++
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 69*******************************************999864 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   4.7e-13   3.5e-11     141     190 ..       3      52 ..       1      56 [] 0.93

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 4.7e-13
   TIGR02982 141 dlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklare 190
                  +sgGq++rv +   +va P+l++ dePt+ ld+ ++ ++v  ++ +a++
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 68*******************************************99975 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.5e-12   1.1e-10     602     651 ..       2      51 ..       1      56 [] 0.93

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.5e-12
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella 651
                 +++SgGQr+ v +   ++ dp++l+LDEPts lD+++  +l+ ++k++++
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMAN 51 
                 579*************************************9999998876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.3e-11   9.5e-10     472     518 ..       4      50 ..       1      56 [] 0.90

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.3e-11
   TIGR02868 472 lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaae 518
                 +SGG+r+R+ +   ++ad  +l LDEPt +LD +t+ +l+ ++ a  
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMA 50 
                 8***************************************9998543 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.7e-11   1.3e-09     128     180 ..       4      56 .]       1      56 [] 0.95

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.7e-11
   TIGR01166 128 lsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktv 180
                 +sgG++krv +   ++  p +l+ldePt+gld+a    l+ +++ + ++G ++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGANI 56 
                 89**********************************************99875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   2.1e-11   1.6e-09     114     165 ..       4      55 ..       2      56 .] 0.95

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2.1e-11
   TIGR03771 114 lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegta 165
                 +sGGqr+rv v   +  +psll+ldep +Gld  +   lv  ++++a++g  
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 79*******************************************9999876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     3e-11   2.2e-09     150     200 ..       4      54 ..       2      56 .] 0.88

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3e-11
   TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakarga 200
                  sGG ++Rvn+ + ++ad  +L LdePt+ Ld+a++   v  +k + ++ga
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 69***************999999**********999878777777777776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.1e-11   2.3e-09     131     180 ..       2      51 ..       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.1e-11
   TIGR03864 131 reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvr 180
                 r ++GG+r+rv++   ++ +P+lL lDe+t GLD ++  +lv +++++++
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMAN 51 
                 678*********************************99999998888774 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   3.6e-11   2.7e-09     615     655 ..       3      43 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 3.6e-11
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid 655
                  +sGGqr+R+++   +v++Ps+L lDE ts LD++t   ++
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLV 43 
                 58*********************************987655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.1e-11   3.1e-09     142     186 ..       4      49 ..       1      56 [] 0.81

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 4.1e-11
   TIGR02211 142 lsGGerqrvaiaralvnkPklvladePtgnldkktakk.ifellle 186
                 +sGG+r+rv +   +v +P+l++ dePt+ ld++t+   +f +   
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDlVFAMKAM 49 
                 8*******************************99986514544433 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.8e-11   3.5e-09     454     505 ..       3      54 ..       1      56 [] 0.94

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 4.8e-11
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarki 505
                 ++sgGqr+R+ +   +  dP l+ LDeP + LD++    l+ a+k++ ++++
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 68*******************************************9998876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   6.8e-11     5e-09     139     189 ..       4      54 ..       2      56 .] 0.94

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 6.8e-11
   TIGR00960 139 lsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt 189
                 +sgG+++rv++   +v +P+ll+ dePt+ ld+++s d++  ++ + ++G 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 8**************************************999999988886 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   6.6e-11   4.9e-09     138     187 ..       4      53 ..       1      56 [] 0.92

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 6.6e-11
   TIGR03873 138 lsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaeg 187
                 +sGG+r+rv++   +  +P+ll+ldePt  ld ++ ++l+ +++ +a++g
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKG 53 
                 8***************************************9999998776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     1e-10   7.6e-09     135     186 ..       4      55 ..       2      56 .] 0.95

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1e-10
   TIGR03608 135 lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegkt 186
                 +sgG+++Rv +   ++ +++l++ DEPt+ LD+ ++  ++  +k ++++g  
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 8********************************************9999875 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0     1e-10   7.8e-09     146     194 ..       4      52 ..       1      56 [] 0.93

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1e-10
   TIGR02315 146 LsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinke 194
                 +sGGq++Rv +   ++ +p+l++ DEP++ LD ++s  ++ ++k ++++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 7*************************************99999998775 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.4e-10     1e-08     138     189 ..       4      55 ..       1      56 [] 0.95

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.4e-10
   TIGR02673 138 lsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGtt 189
                 +sgG ++Rv +   +v +P+ll  DePt  lD+++s +++  +k++ ++G+ 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 8********************************************9999986 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.4e-10     1e-08     131     172 ..       3      44 ..       1      53 [. 0.88

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.4e-10
   TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilP 172
                  +sGG ++Rv +g  ++++P LL +DeP + LD+   ++++ 
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVF 44 
                 58********************************99888765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.7e-10     2e-08     135     181 ..       4      50 ..       2      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.7e-10
   TIGR03265 135 lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklq 181
                 +sGGq++rv ++  ++  P+lL+LDeP s LD+     L   +k++ 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMA 50 
                 8*******************************999888888887765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.7e-10   3.5e-08     144     190 ..       3      49 ..       1      55 [. 0.88

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 4.7e-10
   TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL 190
                 ++sGGq++r+ +   +  +P +l lDePts LD+ ++  +   ++ +
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAM 49 
                 79********************************9988877766665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.9e-10   5.1e-08     588     624 ..       3      39 ..       1      51 [. 0.89

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 6.9e-10
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQ 624
                 ++SGGQr+R+ +   +v  P +l++DE TS LD  t 
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATS 39 
                 79*******************************9986 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.4e-09     1e-07     132     180 ..       4      52 ..       2      56 .] 0.88

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.4e-09
   TIGR03410 132 LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelake 180
                 +sGGq++ + ++  +v++P ll LDePt G+  +   ++  ++k++a++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 7******************************998888888777777665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.9e-09   1.4e-07     136     185 ..       4      53 ..       2      56 .] 0.86

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.9e-09
   TIGR01288 136 lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllarg 185
                 +sgg ++r+ + + ++ dp ll ldept+gld  + + +   ++++  +g
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKG 53 
                 79******************************988776666677776666 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     2e-09   1.5e-07     593     638 ..       3      48 ..       1      56 [] 0.84

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2e-09
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre 638
                  +sGGqr+r+ +   +va+P +l lde ts ld  +   +   +++
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKA 48 
                 58*******************************8776655555555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.7e-09     2e-07     101     138 ..       4      41 ..       1      53 [. 0.84

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.7e-09
   TIGR01187 101 lsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdq 138
                 +sGGqr+rv +   +v  P +L+lDep s LD      
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYD 41 
                 8*******************************876555 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.2e-09   2.4e-07     618     661 ..       4      47 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 3.2e-09
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesks 661
                 +sgGq++r+ +   +v +P +L LDe tS LD+++ + l   ++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMK 47 
                 69*******************************87776655443 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   4.2e-09   3.1e-07     477     522 ..       4      49 ..       1      56 [] 0.86

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 4.2e-09
   TIGR02204 477 LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel 522
                 +sGGq++r+ +   +++d  +L+Lde ts Ld+ +   +  a++++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAM 49 
                 7*******************************98877777777655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   4.5e-09   3.3e-07     128     178 ..       4      54 ..       1      56 [] 0.92

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.5e-09
   TIGR01189 128 LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG 178
                 +s Gq++R+ ++  +++   l  LDEPt  lD ++   l  +++a +++g 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 799********************************9999999999888875 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.9e-09   3.6e-07     144     191 ..       4      51 ..       2      56 .] 0.86

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.9e-09
   TIGR03411 144 LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak 191
                 +s Gq++++++gm +v +p+ll+lDeP++G+ ++        +k++a+
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMAN 51 
                 689****************************99888777766666665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   6.3e-09   4.7e-07     141     186 ..       4      49 ..       2      56 .] 0.90

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 6.3e-09
   TIGR02314 141 lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkei 186
                 +sggq++rv +   + ++p +l+ de ts ld at+  ++  +k +
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAM 49 
                 79*********************************99988777765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.3e-08     1e-06     139     187 ..       4      52 ..       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.3e-08
   TIGR03258 139 lsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhre 187
                 +sGGq++rv +   +v +p +l+ldep s ld+    ++v  +ka+ ++
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 7********************************9999999998887665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-08   1.3e-06     143     177 ..       2      36 ..       1      55 [. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-08
   TIGR01978 143 eGfsGGekkrneilqlallePklaiLDeiDsGlDv 177
                  G sGG +kr ++   ++ +P+l  LDe  sGlD 
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDS 36 
                 599**********999999**************95 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.9e-08   1.4e-06     471     507 ..       4      40 ..       2      55 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.9e-08
   TIGR02203 471 LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseR 507
                 +sGGqR+R+ +   ++ d  +L LDe ts LD+    
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSY 40 
                 7*******************************97655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.1e-08   1.5e-06     126     174 ..       4      52 ..       2      56 .] 0.92

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.1e-08
   TIGR02770 126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrek 174
                 +sGG  +Rv + + ++++++ll+ DePt+ lD ++   ++  ++ + +k
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 7**********************************99999999888765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.1e-08   1.6e-06     129     175 ..       4      50 ..       1      55 [. 0.87

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.1e-08
   TIGR01277 129 lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkla 175
                 +sGGqr+rv +   +v +  +l+ldep s ld +   +++  +k +a
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMA 50 
                 7*******************************998887776666555 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.2e-08   1.7e-06     126     176 ..       5      55 ..       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.2e-08
   TIGR03740 126 slGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGit 176
                 s G ++r+ + + ++ +P ll ldePt Gld     +l   +k++ +kG  
  MMETSP1174-20130828|9356_1   5 SGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 67999*****************************99999999999999976 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.5e-08   1.9e-06     162     196 ..       4      38 ..       1      53 [. 0.73

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.5e-08
   TIGR03719 162 lsGGekrrvalcrlllekPdlllldePtnhldaes 196
                 +sGG+++rv +   ++ +P ll+ldePt  ld+ +
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSAT 38 
                 67888888888888888888888888888887654 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.2e-08   2.4e-06     134     169 ..       4      39 ..       2      55 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.2e-08
   TIGR03522 134 lskGyrqrvGlakallhdPkvlildePttGldPnql 169
                 +s G r+rv +   ++ dP++l ldePt+Gld    
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATS 39 
                 799*****************************8755 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.4e-08   2.5e-06     167     215 ..       2      51 ..       1      56 [] 0.83

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.4e-08
   TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpkta.klvhealkeav 215
                 r +sGG+++rv +  +++ +p ll+ dept  ld  t+ +lv  +   a 
  MMETSP1174-20130828|9356_1   2 RGISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSyDLVFAMKAMAN 51 
                 889*******************************9997478876655544 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.9e-08   2.9e-06     131     169 ..       4      42 ..       2      52 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.9e-08
   TIGR00968 131 lsGGqrqrvalaralavepqvllldepfgaldakvrkel 169
                 +sGGqr+rv +   +  +p +l+ldep + ld+    +l
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDL 42 
                 79******************************9877776 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     4e-08     3e-06     150     196 ..       3      49 ..       1      55 [. 0.86

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4e-08
   TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkkl 196
                  +sGGq +r+n+   + ++P l+ lde  s ld      ++  +k++
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAM 49 
                 58*******************************99887777666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.9e-08   5.2e-06     403     455 ..       3      55 ..       1      56 [] 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.9e-08
   TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGva 455
                 ++sGG++++  +   ++ +p +l ldept G+d  + y++   ++++a++G  
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGAN 55 
                 57999888888888899********************************9976 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.9e-08   6.6e-06     130     170 ..       4      44 ..       2      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.9e-08
   TIGR01186 130 lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqd 170
                 +sGG+++rv +   + a+P ll++de+ s ld  +  +l  
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVF 44 
                 7*******************************998887765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-07   9.3e-06     147     193 ..       4      50 ..       2      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.2e-07
   TIGR03005 147 lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrla 193
                 +sGGq++rv +   +   p +l++de+ts ld     +++  ++ +a
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMA 50 
                 79******************************988877777776665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.1e-07   2.3e-05     114     154 ..       3      43 ..       1      55 [. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.1e-07
   TIGR01184 114 qlsggmkqrvaiaralsirpklllldepfgaldaltreelq 154
                  +sgg ++rv +   +   p ll+ldep   ld+ t  +l 
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLV 43 
                 59********************************9998875 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.7e-07   2.7e-05     611     660 ..       3      52 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.7e-07
   TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk 660
                  isgGq++r+ +   +++d  +l lde ts ld  t   +v  +  + +k
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMANK 52 
                 59********************************9998888777666665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.8e-07   4.3e-05     141     176 ..       3      39 ..       1      54 [. 0.86

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.8e-07
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqa 176
                  +sGG ++r+++  ++v+ p l+f+ ept Gl s  +
  MMETSP1174-20130828|9356_1   3 GISGGQRKRVNVGMEMVADPSLLFLdEPTSGLDSATS 39 
                 579*****************************77654 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.5e-06   0.00026     472     518 ..       4      50 ..       1      55 [. 0.89

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.5e-06
   TIGR01192 472 lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr 518
                 +sgg+r+r+ +   ++ +  +l lde ts ld  t   +  a+ a+ 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVFAMKAMA 50 
                 79*******************************99988877777765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.4e-06   0.00041    1061    1096 ..       3      38 ..       1      53 [. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.4e-06
   TIGR01257 1061 dlsgglqrklsvaiafvgdakvvvldeptsgvdpys 1096
                   +sgg ++++ v + +v d  ++ ldeptsg+d  +
  MMETSP1174-20130828|9356_1    3 GISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSAT 38  
                  577888788888888888888888888888887543 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.3e-05    0.0032     829     882 ..       4      54 ..       1      56 [] 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.3e-05
   TIGR00630 829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGn 882
                 +sGG  +rv + +e+ +      l  lDePt GL  +    L+  ++ +++kG 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVA---DPSLLFLDEPTSGLDSATSYDLVFAMKAMANKGA 54 
                 78999999999988864...6788889999999999888888888888888886 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.8e-05    0.0036     549     599 ..       4      52 ..       2      56 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.8e-05
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank 599
                 +sggqr r+++   +  d  l +ld p s ld  t  ++      k +ank
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATSYDLVF--AMKAMANK 52 
                 79*********************************998753..34666665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   7.8e-05    0.0058     165     197 ..       4      36 ..       1      49 [. 0.93

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.8e-05
   TIGR03415 165 lsGGmqqrvGlarafateadillmdePfsaldP 197
                 +sGG ++rv +   +  +  +l++deP s ld 
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDS 36 
                 7******************************96 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016     0.012     761     796 ..       4      39 ..       2      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00016
   TIGR00957 761 lsggqkqrvslaravysdadiyllddplsavdahva 796
                 +sggq++rv +   + +d  + +ld+p s +d+  +
  MMETSP1174-20130828|9356_1   4 ISGGQRKRVNVGMEMVADPSLLFLDEPTSGLDSATS 39 
                 79******************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        55  (0.0134081); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 217.39
//
Query:       MMETSP1174-20130828|9357_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.2   0.2      0.064   10.9   0.2    1.6  1  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   1.6e-05     0.064       7      17 ..      68      78 ..      65      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR02167  7 sLtsLDlSnfd 17
                s+t+LD+S+++
  MMETSP1174-20130828|9357_1 68 SVTNLDVSSWQ 78
                89********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 455.02
//
Query:       MMETSP1174-20130828|9364_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   38.0   0.2    3.8e-10   37.3   0.1    1.4  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   9.4e-14   3.8e-10       9      55 ..      37      83 .]      28      83 .] 0.92

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 9.4e-14
   TIGR00417  9 nvaltlkvdkvLyeeksefqdvlifeteefGkvlvlDgvvqtterDe 55
                ++++ ++ + + y+ +s+fq ++++et +fGk lvlDg+ q t rDe
  MMETSP1174-20130828|9364_1 37 SLGMEMELKAITYNTQSDFQRIEVIETVAFGKTLVLDGKTQSTLRDE 83
                589******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|9362_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1049.47
//
Query:       MMETSP1174-20130828|9369_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 366.16
//
Query:       MMETSP1174-20130828|9370_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 775.94
//
Query:       MMETSP1174-20130828|9373_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1174-20130828|9371_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1174-20130828|9379_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|9384_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|9383_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-72  243.3   2.3      1e-72  243.3   1.6    3.5  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.6e-44  148.9   0.0    1.7e-14   50.9   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.4e-41  138.2   0.0    4.8e-18   63.2   0.0    3.9  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.1e-39  133.1   0.5    6.9e-23   79.0   0.0    3.6  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.4e-36  124.0   0.0    4.2e-11   40.7   0.0    4.3  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-36  122.8   0.0    1.2e-12   45.7   0.0    4.4  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.1e-35  120.7   0.1    9.7e-10   36.0   0.0    4.3  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.3e-35  120.6   2.6    1.2e-16   58.7   0.0    5.0  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.2e-35  118.9   3.1    1.5e-11   41.5   0.0    4.4  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.9e-35  118.6   0.0    1.2e-21   75.1   0.0    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    6.6e-35  118.6   0.0      3e-10   38.0   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-33  114.5   0.2    9.3e-11   39.4   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.8e-33  112.7   0.0    2.6e-12   43.9   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.4e-33  112.2   0.0    1.4e-11   41.2   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.3e-33  112.0   0.1    4.5e-15   53.7   0.0    4.1  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.5e-33  112.0   0.0    2.1e-14   51.4   0.0    4.2  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      3e-32  110.0   0.1      3e-14   51.0   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.7e-32  109.5   0.9    1.9e-09   35.2   0.0    4.6  4  TIGR01978 sufC: FeS assembly ATPase SufC
    4.4e-31  106.1   2.1    8.4e-15   52.7   0.2    4.9  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.1e-30  104.6   0.0    9.9e-10   35.3   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-30  104.3   0.0    9.6e-09   31.8   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    9.7e-30  101.6   0.2    2.9e-11   41.2   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.3e-29  100.8   0.0    2.9e-13   46.8   0.0    3.9  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.2e-29   99.1   0.0    4.5e-10   36.5   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      2e-28   97.4   0.0    1.1e-11   42.7   0.0    3.9  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.8e-28   96.0   0.0    1.9e-10   38.5   0.0    4.1  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.6e-27   94.3   0.0    3.2e-09   34.4   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.9e-27   92.8   0.0    1.2e-11   41.7   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.2e-27   92.8   0.1    4.3e-12   43.3   0.0    3.8  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    7.3e-27   92.2   0.1    1.1e-12   45.9   0.0    4.1  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.1e-27   91.8   0.0    2.9e-10   37.8   0.0    4.4  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-26   91.3   1.0    5.2e-11   40.5   0.1    4.3  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    6.7e-26   88.9   0.1    4.2e-13   46.9   0.0    3.7  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.3e-25   86.9   0.0    5.4e-09   33.5   0.0    4.3  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.3e-25   86.3   0.1    7.6e-10   36.7   0.0    3.7  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    7.5e-24   82.3   0.0    8.6e-08   29.7   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    9.1e-24   82.2   0.0    3.8e-13   47.2   0.0    3.9  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.2e-23   81.7   0.1      1e-06   26.3   0.0    4.3  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.9e-23   81.0   0.6      2e-12   44.8   0.0    4.0  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.5e-23   80.0   0.0    2.4e-07   27.9   0.0    4.1  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.5e-23   79.9   0.1    2.4e-08   31.2   0.0    3.9  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.8e-22   77.4   0.0    7.7e-07   25.8   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.3e-21   72.1   0.0    1.9e-09   35.1   0.0    3.8  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      6e-19   66.1   0.3    5.3e-08   30.1   0.0    4.3  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.3e-18   64.4   0.0    2.2e-08   31.7   0.0    3.3  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.9e-17   60.1   0.0      3e-06   23.8   0.0    3.9  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.3e-16   57.6   0.0    1.9e-06   24.9   0.0    4.2  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.3e-16   57.3   8.7    4.2e-07   26.7   0.0    4.8  3  TIGR00955 3a01204: pigment precursor permease
    1.3e-14   51.4   0.1    2.5e-09   33.9   0.0    5.8  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    9.4e-14   48.7   0.0    2.9e-05   20.7   0.0    3.9  3  TIGR01192 chvA: glucan exporter ATP-binding protein
      1e-12   44.2   0.1    0.00033   16.0   0.0    3.8  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.4e-11   41.8   8.2    2.2e-08   31.3   0.1    5.0  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.8e-09   33.1   0.0    0.00014   18.4   0.0    2.4  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.1e-07   27.5   0.0      0.017   10.3   0.0    3.9  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.8e-07   27.6   0.2     0.0034   13.4   0.0    3.9  4  TIGR00630 uvra: excinuclease ABC subunit A
    1.4e-06   25.1   0.0    0.00018   18.2   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.9e-06   22.8   0.1     0.0031   12.1   0.0    3.2  2  TIGR01257 rim_protein: rim ABC transporter
    3.1e-05   20.9   0.0    0.00028   17.8   0.0    2.1  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    3.7e-05   21.5   0.0       0.22    9.2   0.0    3.2  2  TIGR00152 TIGR00152: dephospho-CoA kinase
    0.00019   18.2   0.0     0.0018   15.0   0.0    2.0  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    0.00035   16.8   3.4    0.00062   16.0   0.0    2.6  3  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
    0.00069   16.3   0.0     0.0026   14.4   0.0    1.8  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    0.00077   17.1   0.0      0.098   10.3   0.0    2.9  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.012   12.1   0.4       0.17    8.3   0.0    2.6  3  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
      0.052    8.9   0.0      0.052    8.9   0.0    5.8  5  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.054   11.0   3.8       0.88    7.1   0.0    2.7  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       3.1   1.9e+02     241     283 ..     227     267 ..     212     283 .. 0.64
   2 !  243.3   1.6   1.6e-74     1e-72      17     540 ..     299     830 ..     292     839 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 3.1
   TIGR03719 241 gnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarq 283
                 g   + l++ke +     k+ +++ +++++e e v++s +++q
  MMETSP1174-20130828|9383_1 227 GADGKKLTKKEVKKL--MKDRENKLREIAEEKERVQRSVEGQQ 267
                 555555555554443..34445667788888888888888877 PP

  == domain 2    score: 243.3 bits;  conditional E-value: 1.6e-74
   TIGR03719  17 kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpe..edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaark...kalkk....eleWvr..sspkarqa.....kskarlaryeel.aseesekkeetaeivi..ppgerlGdkvievenlskafgdk..lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs.rdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGed 540
                 +k+++ d +l+  +g   G++G+nG Gkstllk++a      +G  ++ + +   y+eqe   de+    e+v ++ +e  ++l++   + a+l e  ++  k  ++  k+ e++ a +a   +sk    +  l   +  ++    ++sGG + r++l+r l+ +P l++ldePtnhld ++v Wl+ +l+++k t+++v hd+ fl+ v++ il ld  +  +ykgny ++    e++ +q++k+ ++++   k++k+      + v+  +s k+r++     k+ a +a+ ++  + +e  k+ ++ ++++  +   +l   +iev++++ ++g +  +l+d+l+f +  ++ + v+G nG+Gkstl+kl+t++ kp +G ++    ++++  +q+  ++l  n+t  e +    + l+      ++r+ +g+f+++G+     + +lsGG++ rv + +l      +l+ldePtn+ld+e + al ea++++ G +vv++hd  +++     +   e++    +    +++y+e+  +rl  +
  MMETSP1174-20130828|9383_1 299 NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA------NGSLKLPPRVDALYVEQEVMADETP-AFEAVLMADKERWALLEEERGLLAELKESPDE--KKDARLMKIYEQLSALGADAAESKARRILFGLGFDAemQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIRSYKGNYDTFKGMEEQKRRQQQKAYDQQErrlKEMKRsgitKKKAVEdlKSKKGRESggskkKKNAAVASGQDTaEIQELIKRPREYSVTLefAEVAKLPPPLIEVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPRMRIGVYNQHfVEKLPMNETPVEYLRRLFQDLDY----QSARNRLGKFGLEGHAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARLIEATESQLWVVEDQDARPWE-KGFDNYREELLRRLEVQ 830
                 789999999**************************9......79****************9988876.56788888899999999999999999998665..444677889999999999999999999998887654116778899************************************************************************************96555544444444444433001444432111122222223455554222211444555554444155666666666665551156679***************987446****************************************************99996369999999999998776665544....468999*******************************************************************************99999999988777775.55*******99998654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.1e-05    0.0013     478     515 ..     298     335 ..     271     346 .. 0.85
   2 !   50.9   0.0   2.7e-16   1.7e-14     592     680 ..     424     512 ..     391     527 .. 0.90
   3 !   41.0   0.0   2.6e-13   1.6e-11     438     524 ..     586     673 ..     576     677 .. 0.92
   4 !   36.5   0.0   6.2e-12   3.8e-10     602     668 ..     733     797 ..     723     808 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-05
   TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllg 515
                  +k+   + +l+i  G + +++G +G GKstllk++++
  MMETSP1174-20130828|9383_1 298 YNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 5566667889*************************985 PP

  == domain 2    score: 50.9 bits;  conditional E-value: 2.7e-16
   TIGR03375 592 GldlqigerG.esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGriv 680
                 G+d  ++er  +++SgG r  ++laRal  +p +++LDEPt++lD ++   l + L+++  +kTl++v+H + +L+ +++ i+ ld+++i 
  MMETSP1174-20130828|9383_1 424 GFDAEMQERAtREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDFLNsVCQEILHLDEQKIR 512
                 9999999996379*********************************************9..69************8255789999999996 PP

  == domain 3    score: 41.0 bits;  conditional E-value: 2.6e-13
   TIGR03375 438 esldelmklpvereeekrllsreklkG.eielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsv 524
                  +++el+k+p+e +   ++++  kl    ie+++v+f+Y  +     +++++ i   +++ ++G++GsGKstllkll+  ++pt+G +
  MMETSP1174-20130828|9383_1 586 AEIQELIKRPREYSVTLEFAEVAKLPPpLIEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 578999***************999975269********************************************************88 PP

  == domain 4    score: 36.5 bits;  conditional E-value: 6.2e-12
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                 + LSgGQ+  v++  + l  p++l+LDEPt++lD +s + l e+++++     +v+vtH + l+e  
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEG--GMVVVTHDARLIEAT 797
                 57*******************************************98865..59*****99999866 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   7.7e-20   4.8e-18     305     522 ..     271     498 ..     253     506 .. 0.74
   2 !   35.3   0.0   2.1e-11   1.3e-09     291     380 ..     579     674 ..     567     691 .. 0.78
   3 !   34.2   0.0   4.9e-11     3e-09     457     525 ..     733     799 ..     721     803 .. 0.90

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 7.7e-20
   TIGR02857 305 eqpeaekapltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllg...fvepteGailvngaelaeldadswrkqiawvpQk..Pllf.egtvaenirla...rkdaseaevkealeragldelvkalpq.....gleteiGerg.agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                 +q   +++++t+++s  + +   +++  +++    + +lt+  g++++lvG+ G GKstllk+++     ++p   a+ v+++ +a+ +++   + +     +  +ll  e  ++++++ +   +kda   ++ e l++ g+d   +++++     g++ e+ er+ ++ SgG r R++LAral  +  l++lDEPt hLD ++   + + l++   ++t+l+v+H++  ++ 
  MMETSP1174-20130828|9383_1 271 SQTAIDEKDSTWQNSLDVVIPSFTISAYNKN-LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANgslKLPPRVDALYVEQEVMADETPA--FEAVLMADKErwALLEeERGLLAELKESpdeKKDARLMKIYEQLSALGADAAESKARRilfglGFDAEMQERAtREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK--WKKTLLVVSHDQDFLNS 498
                 4555667777888877888888888888888.999*****************************853334679999999988866666655..3444444433003333235688888765111455555557788888888887777653333338899999886257*******************************************99..679********987765 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.1e-11
   TIGR02857 291 vaaaealvevld.....aeeqpeaekapltaaassslelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGail 380
                 va+ ++ +e+ +     +e  ++ e a++++ +   +e+++v+++y ++     +e+++ ++  +++ +vG+ G+GKstllkll   v+pt+G i+
  MMETSP1174-20130828|9383_1 579 VASGQDTAEIQElikrpREYSVTLEFAEVAKLPPPLIEVNDVKFQYgPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 44444444444433143344455556666677777***********77777889***************************************997 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 4.9e-11
   TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladk 525
                 + LSgGq+ R+    + l   +ll lDEPt +LD e+  ++ ea++++  g  +++v+H+  l+e+ + 
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGG--MVVVTHDARLIEATES 799
                 67*********************************************7766..5789****99998876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.1e-24   6.9e-23       8     215 ..     294     511 ..     287     517 .. 0.77
   2 !   47.9   0.1   3.4e-15   2.1e-13      30     200 ..     645     794 ..     627     807 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.1e-24
   TIGR03873   8 svraggrlivddvdvtaPaGaltgllGPnGsGkstllrlla.Gll..apdaGev....dlagadlkalsrrara..rrvalveqdsd.....aevplsvrdvvalGriPhrslfaadsdedaevvdralarvel.ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                 +++a ++ +  d ++t  +G   gl+GPnG Gkstll+++a G l   p   ++    ++ + +  a+++   a   r al+e +       +e p   +d+ ++     +s+++ad++e    ++r+l   +  +++ +r++  +sGG r r+ laral  eP+l++ldePtnhld++a + l   +++    + t +v  hd ++  svc++++ ld+ ++
  MMETSP1174-20130828|9383_1 294 TISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAnGSLklPPRVDALyveqEVMADETPAFEAVLMAdkERWALLEEERGllaelKESPDEKKDARLMKIYEQLSALGADAAES--KARRILFGLGFdAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW---KKTLLVVSHDQDFLNSVCQEILHLDEQKI 511
                 66677778888999**************************845441145544443343334444445555444422567899988652211245666788999998889999999999554..45777766665268999****************************************99999999998...999*********************98776 PP

  == domain 2    score: 47.9 bits;  conditional E-value: 3.4e-15
   TIGR03873  30 tgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelsslad.rdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnla 200
                   ++G nGsGkstll+ll+  ++p++G             rr+  +r+ + +q+  +++p++   v  l r+       +  d d + +++ l++ +l+  a+  ++  lsGG++ rv +      +P+ll+ldePtn ld+++  +l ++++     +  +vv  hd  l 
  MMETSP1174-20130828|9383_1 645 ICVVGNNGSGKSTLLKLLTDEVKPTDGL-----------IRRNPRMRIGVYNQHFVEKLPMNETPVEYLRRL------FQ--DLDYQSARNRLGKFGLEGHAHtIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY---EGGMVVVTHDARLI 794
                 579*********************9985...........58888899**************98888777664......33..44889999********9888516899**********************************9988888888777...44455556776665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   0.00012    0.0072      18      50 ..     303     335 ..     293     354 .. 0.87
   2 !   40.7   0.0   6.8e-13   4.2e-11     111     213 ..     409     509 ..     397     510 .. 0.84
   3 !   27.5   0.0   7.5e-09   4.6e-07       1      60 [.     614     674 ..     614     695 .. 0.91
   4 !   36.5   0.0   1.3e-11   8.4e-10     120     209 ..     716     803 ..     698     808 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 0.00012
   TIGR02673  18 LkdvslkiekgeflfltGasGaGkttllklllg 50 
                   d +l+i +g  + l+G+ G Gk+tllk++ +
  MMETSP1174-20130828|9383_1 303 FVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 568899************************975 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 6.8e-13
   TIGR02673 111 eeeiqkrveevlelvgledkaka.lpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                 +++ +++ +++l  +g++  +++  ++e+sgG + R+++aRa+  +P+l++ DePt  lD +       l   l+k   t++v++hd++++++v + +l+l++ 
  MMETSP1174-20130828|9383_1 409 ADAAESKARRILFGLGFDAEMQErATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIW---LDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQ 509
                 5567788889999999988877615679********************************876555...55555556679*********************975 PP

  == domain 3    score: 27.5 bits;  conditional E-value: 7.5e-09
   TIGR02673   1 iielekvskeyaagveaL.kdvslkiekgeflfltGasGaGkttllklllgaekpsrGeve 60 
                 +ie+++v+++y  +  +L +++++ i+  + + ++G+ G+Gk+tllkll+   kp+ G ++
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYGPNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 58999*******999887478*************************************997 PP

  == domain 4    score: 36.5 bits;  conditional E-value: 1.3e-11
   TIGR02673 120 evlelvgledkakalpe.elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvle 209
                 + l + gle +a+++++  lsgG + Rv      + +P+ll  DePt nlD e   +i +l +++n++   ++v+thd +l+e+++ ++  
  MMETSP1174-20130828|9383_1 716 NRLGKFGLEGHAHTIAMrDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIE---SIDALCEAINAYEGGMVVVTHDARLIEATESQLWV 803
                 5677899999888887627********************************86...5667778888888889999********99887655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00068     0.042      18      52 ..     300     334 ..     289     355 .. 0.84
   2 !   45.7   0.0   1.9e-14   1.2e-12     116     219 ..     410     511 ..     399     513 .. 0.82
   3 !   23.2   0.0   1.4e-07   8.7e-06      15      63 ..     626     674 ..     614     681 .. 0.86
   4 !   36.8   0.0   9.8e-12   6.1e-10     120     216 ..     712     805 ..     702     809 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00068
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllg 52 
                  +++ + +l i +g + ++vG  G Gkstll +++
  MMETSP1174-20130828|9383_1 300 KNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 566778899**********************9985 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 1.9e-14
   TIGR02211 116 keakerakellekvglekrinkkps.elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkdgkl 219
                   a+++a ++l  +g++  ++++++ e+sGG r r+++aral  +P+l++ dePt +ld ++   + + l+    + + +llvv+hd+++ + + ++ l+l + k+
  MMETSP1174-20130828|9383_1 410 DAAESKARRILFGLGFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQ----KWKKTLLVVSHDQDFLNSVcQEILHLDEQKI 511
                 568899************999887549********************************987655544444....4556799******988765277788888776 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.4e-07
   TIGR02211  15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                  +   +++++++ i+    + +vG+ GsGkstll ll+   kpt+G + 
  MMETSP1174-20130828|9383_1 626 PNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 555567899************************************9875 PP

  == domain 4    score: 36.8 bits;  conditional E-value: 9.8e-12
   TIGR02211 120 erakellekvglekrink.kpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkd 216
                 + a + l k+gle +++     +lsGG++ rv      + +P+l++ dePt nld ++ +++ e +    ++++ +++vvthd +l++ ++ +l + +
  MMETSP1174-20130828|9383_1 712 QSARNRLGKFGLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAI----NAYEGGMVVVTHDARLIEATESQLWVVE 805
                 56778899999986665515679********************************98876655444....457789**************99987654 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.9e-06   0.00024      10      43 ..     305     339 ..     298     356 .. 0.83
   2 !   33.5   0.0   9.4e-11   5.8e-09     105     188 ..     413     494 ..     402     496 .. 0.82
   3 !   27.3   0.0   7.5e-09   4.7e-07       7      51 ..     631     675 ..     624     682 .. 0.90
   4 !   36.0   0.0   1.6e-11   9.7e-10     109     190 .]     715     794 ..     707     794 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.9e-06
   TIGR01166  10 glnlavergevlallGanGaGkstlllhl.nGllr 43 
                 + +l++ +g+  +l+G+nG Gkstll+++ nG+l+
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIaNGSLK 339
                 678999********************987478887 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 9.4e-11
   TIGR01166 105 errvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 e++ r  l  ++ + +++er+t+ +sgG + r+++a a+ ++p +++ldePt  ld + +  l + l+k +   kt+++ +hd d
  MMETSP1174-20130828|9383_1 413 ESKARRILFGLGFDaEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWK---KTLLVVSHDQD 494
                 455556666666643799***************************************99888888877765...68888899977 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 7.5e-09
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvll 51 
                  +++ln+ ++  ++++++G+nG+Gkstll+ l+  ++P+ G + +
  MMETSP1174-20130828|9383_1 631 LFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRR 675
                 5689*************************************8865 PP

  == domain 4    score: 36.0 bits;  conditional E-value: 1.6e-11
   TIGR01166 109 realaavdisgleer.pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdla 190
                 r+ l + +++g ++  +++ lsgG+k rv       lrp++l+ldePt +ld +  + l e+++   e G  +v+ thd+ l+
  MMETSP1174-20130828|9383_1 715 RNRLGKFGLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY-EGG--MVVVTHDARLI 794
                 67778888888877625789*********************************9999999888754.444..46669**9885 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   1.9e-18   1.2e-16       7     204 ..     296     504 ..     290     506 .. 0.74
   2 !   19.8   0.0   1.5e-06   9.4e-05      12      61 ..     630     679 ..     617     718 .. 0.74
   3 !   37.1   0.0   7.8e-12   4.8e-10     117     201 ..     716     798 ..     707     803 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 1.9e-18
   TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgl..lekkdsgkvilegkekaklks...kkaskllreklgylFqnfaLlen..et..veenlelalklkkks...kkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev.aekadrvi 204
                 +  +k+++ + +l+i +G+ + +vG  G GKstlL ++++  l  + + + ++ ++e ++ ++   +      +e+ + l  + +Ll +  e+   ++  +l  +++++s       e+k  ++l  +g+  + +++   e+sgG + R++lar+l+ e++l++ DEPt  LD +   +v+ l + l++  kt+++v Hd+    + +++++
  MMETSP1174-20130828|9383_1 296 SAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLKLPPRVDALYVEQEVMADETpafEAVLMADKERWALLEEERGLLAElkESpdEKKDARLMKIYEQLSalgADAAESKARRILFGLGFdAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLN---AVIWLDDYLQKWKKTLLVVSHDQDFlNSVCQEIL 504
                 667899********************************75226666666666666654332221102233446888999999999986522331134555555555555511155778889999******777889999**********************************75...67777788888999********975145566666 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.5e-06
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegke 61 
                 +++++l++ i+  + + +vG+ GsGKstlL +l+   k+ +g +  + + 
  MMETSP1174-20130828|9383_1 630 VLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPRM 679
                 6899*****************************99888888877766554 PP

  == domain 3    score: 37.1 bits;  conditional E-value: 7.8e-12
   TIGR03608 117 evlekvglekklkk.kiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekad 201
                 + l k+gle + ++  + +lsgG+k Rv    + l  ++l++ DEPt +LD ++ +++ e ++     +  +++vtHd+ + e+++
  MMETSP1174-20130828|9383_1 716 NRLGKFGLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINA---YEGGMVVVTHDARLIEATE 798
                 6678888966655515779**********************************99998887655...4456889*****9988766 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     4e-06   0.00025     296     382 ..     248     334 ..     233     368 .. 0.71
   2 !   41.5   0.0   2.4e-13   1.5e-11     460     528 ..     424     491 ..     393     493 .. 0.84
   3 !   29.0   0.0   1.4e-09   8.9e-08     308     392 ..     589     673 ..     576     682 .. 0.82
   4 !   27.8   0.0   3.3e-09     2e-07     470     529 ..     733     790 ..     717     791 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4e-06
   TIGR02868 296 qltrvraaaeRieevldakvevaeasapaaeaaas..ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                 +l+++++  eR++   + + + a ++ + +e+ ++  ++ ++++   ++s  +++  + + +l++  G++  +vG+ G GKstLl+++a
  MMETSP1174-20130828|9383_1 248 KLREIAEEKERVQRSVEGQ-QFACSQTAIDEKDSTwqNSLDVVIPSFTISAYNKN-LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 6677777788888555444.23333333333222212466666666665544443.68889*************************997 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 2.4e-13
   TIGR02868 460 Gldtklgeggar.lSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                 G d++++e+++r +SGG r R+ lARaL  +  +++LDEPt hLD ++   l + L +   ++t ++v+h
  MMETSP1174-20130828|9383_1 424 GFDAEMQERATReFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSH 491
                 8999****99755********************************99876655555443..456666776 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.4e-09
   TIGR02868 308 eevldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGev 392
                 +e+++ +  +  ++ + ae a+   p +e++d++++y  + +  ++++++ +   +r+ vvG  G+GKstLl+ll+  ++p +G +
  MMETSP1174-20130828|9383_1 589 QELIKRP-REYSVTLEFAEVAKLPPPLIEVNDVKFQYGPNLPvLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 5555555.44444555555556667999**********9999778************************************99966 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 3.3e-09
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                 + lSGG++ R+++    l   ++l LDEPt +LD e  ++l e+++a e g  +v+vth+
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGG--MVVVTHD 790
                 469******************************************988776..5678886 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-05    0.0019      12      47 ..     299     334 ..     291     363 .. 0.87
   2 !   23.4   0.0   1.3e-07   8.3e-06     119     172 ..     428     481 ..     398     504 .. 0.84
   3 !   75.1   0.0   1.9e-23   1.2e-21      14     188 ..     630     793 ..     617     802 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.1e-05
   TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRila 47 
                 +++l+ + ++++  G    ++GpnG GK+tLL+++a
  MMETSP1174-20130828|9383_1 299 NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 678999999*************************98 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.3e-07
   TIGR01189 119 gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172
                 +++++++++ s G + R++lar l  + +l +LDEPt  lD ++v  l + l++
  MMETSP1174-20130828|9383_1 428 EMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK 481
                 56788999************************************9999888876 PP

  == domain 3    score: 75.1 bits;  conditional E-value: 1.9e-23
   TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgH.ldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpv.aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 vl+ +l+f +     + v+G+nG+GK+tLL++l+  +kp++G ++ n     ++r        y  H  + l  + + +E L+ + ++l++++  + + l k gL+g++++++ + Ls Gqk R+ +  L l + +l  LDEPt +lD e+++ l e+++a+  +gG+v+++    l
  MMETSP1174-20130828|9383_1 630 VLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRN----PRMR-----IGVYNQHfVEKLPMNETPVEYLRRLFQDLDYQS--ARNRLGKFGLEGHAHTIAmRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY--EGGMVVVTHDARL 793
                 799******************************************99....3333.....234444413456667788888887777777555..99************9875279*******************************************975..7999998766554 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0014     0.089      23      51 ..     307     335 ..     294     355 .. 0.81
   2 !   35.0   0.0   4.1e-11   2.5e-09     113     214 ..     410     509 ..     402     511 .. 0.83
   3 !   29.8   0.0   1.6e-09   9.7e-08       1      64 [.     614     677 ..     614     710 .. 0.85
   4 !   38.0   0.0   4.8e-12     3e-10     118     208 ..     713     801 ..     706     807 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0014
   TIGR00960  23 tvkiekGelvflvGhsGaGkstllklilg 51 
                 ++ i +G    lvG+ G Gkstllk+i +
  MMETSP1174-20130828|9383_1 307 ELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 66788889999***************985 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 4.1e-11
   TIGR00960 113 reieervsaalekvGlkdk.akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                 +++e +++  l  +G+    +++   ++sgG + r+++ara+  +P+l++ dePt  ld +    ++ l + +++   t+lv +hd+++++s  + +l+l++ 
  MMETSP1174-20130828|9383_1 410 DAAESKARRILFGLGFDAEmQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA---VIWLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQ 509
                 556667777777777765415567789********************************875...66677777778889********************9875 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 1.6e-09
   TIGR00960   1 mikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsg 64 
                 +i++++v  +y     + +d++++ i+  + + +vG+ G+Gkstllkl++   kp+ G ir + 
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNP 677
                 5889999999999999999***************************************998763 PP

  == domain 4    score: 38.0 bits;  conditional E-value: 4.8e-12
   TIGR00960 118 rvsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrv 208
                  +++ l k Gl+++a+++ + +lsgG++ rv      + +P+ll+ dePt nld e    i  l e +n     ++v thd  l+e ++ ++
  MMETSP1174-20130828|9383_1 713 SARNRLGKFGLEGHAHTIAMrDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIES---IDALCEAINAYEGGMVVVTHDARLIEATESQL 801
                 5677899**********98747********************************875...556788888888888999*******9987765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.3e-05    0.0014      17      48 ..     303     334 ..     291     344 .. 0.86
   2 !   39.4   0.0   1.5e-12   9.3e-11      95     177 ..     398     481 ..     391     529 .. 0.88
   3 !   22.6   0.0     2e-07   1.3e-05       2      58 ..     615     673 ..     614     682 .. 0.88
   4 !   31.0   0.0   5.5e-10   3.4e-08     113     179 ..     714     781 ..     701     807 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.3e-05
   TIGR03864  17 lddvsltvakgefvaLLGpnGaGkstLfsllt 48 
                 + d +lt+ +g+   L+GpnG GkstL+++++
  MMETSP1174-20130828|9383_1 303 FVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 456799***********************996 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 1.5e-12
   TIGR03864  95 lryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevre 177
                 ++ + +L  l+  +ae++ +++l  lg+ +  +e+  re +GG r r+ +aral  eP+l++lDe+t  LD+++   l +++++
  MMETSP1174-20130828|9383_1 398 MKIYEQLSALGADAAESKARRILFGLGFDAEMQERaTREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK 481
                 67788999********************9998888579**********************************998777776665 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 2e-07
   TIGR03864   2 leveglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegei 58 
                 +ev++++f+yg +    +d++++ +   + + ++G nG+GkstL++llt  ++ ++g i
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 799********98324569*********9999*****************9888887766 PP

  == domain 4    score: 31.0 bits;  conditional E-value: 5.5e-10
   TIGR03864 113 ieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                  ++ l ++gl+ +a++  +r+L+GG++ rv      l +P+lL lDe+t  LDies +al e++++  
  MMETSP1174-20130828|9383_1 714 ARNRLGKFGLEGHAHTIaMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYE 781
                 5667888999988877549*****************************************99998654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00017     0.011     328     365 ..     297     334 ..     281     344 .. 0.84
   2 !   43.9   0.0   4.1e-14   2.6e-12     440     534 ..     421     514 ..     395     522 .. 0.83
   3 !   21.8   0.0     2e-07   1.2e-05     308     376 ..     608     674 ..     575     691 .. 0.80
   4 !   29.2   0.0   1.1e-09     7e-08     454     522 ..     734     799 ..     724     812 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00017
   TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                   +k+ + + ++++  G   +++Gp g Gks+L +++ 
  MMETSP1174-20130828|9383_1 297 AYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 4566788899*************************995 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 4.1e-14
   TIGR01842 440 lpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlkdGalkaf 534
                 +  G+d+e+ e+   + sgG r Ri+LaRal+ +P+l++LDeP   LD +  + l + l++    k t +v++h    l++v ++il l++ +++ +
  MMETSP1174-20130828|9383_1 421 FGLGFDAEMQERAtREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK---WKKTLLVVSHDQDFLNSVcQEILHLDEQKIRSY 514
                 6679999999865168********************************9988888877665...556899*****9999876489999999998877 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2e-07
   TIGR01842 308 lklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvr 376
                  klP p   +ev++v+++   +    + +++f ++  + + ++G+ gsGks+L +ll+  ++p+ G +r
  MMETSP1174-20130828|9383_1 608 AKLPPP--LIEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 344444..5889999999999998999***************************************998 PP

  == domain 4    score: 29.2 bits;  conditional E-value: 1.1e-09
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdk 522
                  LsgGq+ R+         P+l+ LDeP  nLD e   al +a+++    +  +vv+th ++l+e+ + 
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY---EGGMVVVTHDARLIEATES 799
                 79*****************************************9764...5678899*****9998764 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.7e-07   5.4e-05     434     526 ..     247     334 ..     232     341 .. 0.69
   2 !   41.2   0.0   2.3e-13   1.4e-11     604     690 ..     424     512 ..     405     529 .. 0.88
   3 !   31.5   0.0   1.9e-10   1.2e-08     477     550 ..     614     687 ..     576     703 .. 0.84
   4 !   14.7   0.0   2.3e-05    0.0015     614     671 ..     733     790 ..     724     807 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.7e-07
   TIGR03796 434 selqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                 ++l+e++ + er++  +e ++        ++a  +e+ +  + ++++   +f+ sa +++l  d +l++ +G++  lvG+ G Gkst+ k++a
  MMETSP1174-20130828|9383_1 247 NKLREIAEEKERVQRSVEGQQFACS----QTA-IDEKDSTWQNSLDVVIPSFTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 4555555555555433332222222....222.222335667777787789****************************************98 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 2.3e-13
   TIGR03796 604 gyeaelaegg.anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiivlerGkvv 690
                 g++ae++e + + +sGG r R+ +ARaL  +P++++lDE t  LD ++   +d+ l++   t ++v+H    +   c+ei+ l++ k+ 
  MMETSP1174-20130828|9383_1 424 GFDAEMQERAtREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKTLLVVSHDQDFLNSvCQEILHLDEQKIR 512
                 7899998865279*******************************************************98877654999*999999985 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 1.9e-10
   TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprev 550
                  +e+++v+f y +  + l +++++ ++  +r+ +vG  GsGkst+ kl++   +p++G i+ + + r  + ++ 
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPRMRIGVYNQH 687
                 69********************************************************9997776666555555 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 2.3e-05
   TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                 ++lsGGq+ R+        +P +L lDE t  LD e   a+ e++      +++v+H 
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHD 790
                 689*****************************************************94 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   7.2e-17   4.5e-15      12     219 ..     294     511 ..     286     512 .. 0.74
   2 !   45.1   0.0   3.1e-14   1.9e-12      24     209 ..     635     798 ..     614     807 .. 0.68

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 7.2e-17
   TIGR02982  12 gkgelrkqvlfdinleiepgeiviltGpsGsGkttlltli..gglrsvqeGelkvlgke...........lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldyk.pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkmedGkl 219
                    + +k+++ d +l+i +g    l Gp G Gk tll +i  g+l+     +   +++e           +  a++++   +  + G++    +  +     + +++  +l+ +l a++a++ka+ +l  +g++ +++ +  +++sgG + r+++aral  +P l++ dePt  ld ++   + + lqk       t+l+v hd+  l+ v++ i+++++ k+
  MMETSP1174-20130828|9383_1 294 TISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIanGSLKLPPRVDALYVEQEvmadetpafeaVLMADKERWALLEEERGLLAELKESPDEKKDARLMKIYEQLS-ALGADAAESKARRILFGLGFDAEMQERaTREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW----KKTLLVVSHDQDFLNsVCQEILHLDEQKI 511
                 55677899999****************************9556788776666555566633333444444444444444444445555444444333333344444444444.45889999*************9997651689********************************99866666666655....5699*******999758999***998876 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 3.1e-14
   TIGR02982  24 inleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldyk.pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvad 209
                 +n+ i+ +  + + G+ GsGk tll l++   +  +G                + + r +iG+ + +h + +    e  v+      ++l ++   ++a++ l + gle + +    +dlsgGqk rv +      rP+l++ dePt  ld +s  ++ e ++  a e    +++vthd+r+++ ++
  MMETSP1174-20130828|9383_1 635 LNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDG--------------LIRRNPRMRIGV-YNQHFVEKLPMNETPVEY----LRRLFQDLDYQSARNRLGKFGLEGHAHTIaMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAIN--AYE--GGMVVVTHDARLIEATE 798
                 5666666666666666666666666665544333333..............334455667774.444444333334444444....4444445556778999*******9988751689**********************************9888887765..334..45789*******98775 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.3e-16   2.1e-14      15     224 ..     300     511 ..     294     528 .. 0.80
   2 !   22.1   0.0   2.9e-07   1.8e-05       1      60 [.     614     674 ..     614     692 .. 0.88
   3 !   32.1   0.0   2.7e-10   1.6e-08     111     187 ..     699     776 ..     680     795 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.3e-16
   TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinr..lveissgsillegkevtklk....kkelrklrkkigmifqeynlierltvl.envLsgrlgakstlksllglfseedkekAlelLervglaelaakrad.qLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkagei 224
                 k+ + + +l+i +G   +++G+ G Gkstll++i +  l+ + + + l  ++ev + +    ++ l   +++ +++  e  l+++l+   +    +rl  ++  ++l  l  ++ ++kA ++L  +g+++  ++ra  + sGG + R+++aRal  +p+l++ DEP+  LD ++   + d+l    ++ + t +v  H+ d+ ++ ++ i+ l + +i
  MMETSP1174-20130828|9383_1 300 KNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLKLPPRVDALYVEQEVMADEtpafEAVLMADKERWALLEEERGLLAELKESpDEKKDARL--MKIYEQLSALGADAAESKARRILFGLGFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYL----QKWKKTLLVVSHDQDFLNSVCQEILHLDEQKI 511
                 66778999**************************7434787888888888888876663544566777789999999999888876654144445555..56677777777889999************9999998538********************************88766555555....56677999999**************9999888 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.9e-07
   TIGR02315   1 llevenlskvypngkqal.knvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                 l+ev++++ +y+ +  +l +++n+ i+    + v+G+ G+Gkstll+ +   v++++g i 
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYGPNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 699********9877665389*****************************99999999775 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 2.7e-10
   TIGR02315 111 lksllglfseedkekAlelLervglaelaakra.dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdl 187
                 ++ l +lf++ d++ A + L ++gl+ +a++ a  +LsGGq+ Rv  +   + +p+l++ DEP+  LD +s   + ++
  MMETSP1174-20130828|9383_1 699 VEYLRRLFQDLDYQSARNRLGKFGLEGHAHTIAmRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEA 776
                 4556689*******************9998765278********************************9887665544 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00046     0.029      24      58 ..     300     334 ..     291     355 .. 0.84
   2 !   51.0   0.0   4.8e-16     3e-14     116     231 ..     402     513 ..     389     544 .. 0.84
   3 !   13.3   0.0   0.00014     0.009      28      69 ..     633     674 ..     622     679 .. 0.88
   4 !   28.4   0.0   3.7e-09   2.3e-07     114     225 ..     698     805 ..     681     809 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00046
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlll 58 
                 k+++ + +l++ +G   +l+G  G Gkstl +++ 
  MMETSP1174-20130828|9383_1 300 KNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 56677899**********************99985 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 4.8e-16
   TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqive 231
                 ++l  l + + + ++ ++l  +++++e+ ++  r++sGG   ri++aral +eP l++lde    ldl   +     l +  q+   + l+++hd    ++++q++l lde +i  
  MMETSP1174-20130828|9383_1 402 EQLSALGADAAESKARRILFGLGFDAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVI----WLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIRS 513
                 567778888899999****************************************************86543....4555556666789*********************999855 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 0.00014
   TIGR02769  28 dnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                 d++++ ++    + ++G+ G+Gkstl +ll    kP++G ++
  MMETSP1174-20130828|9383_1 633 DELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 6778888889999*************************9875 PP

  == domain 4    score: 28.4 bits;  conditional E-value: 3.7e-09
   TIGR02769 114 PlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvld 225
                 P++ l +l +    + + + l + +l+ +      r+lsGGq  r+       ++P+l+ lde   nld+     i +l +++++  G  ++++thd rl++    ++ v++
  MMETSP1174-20130828|9383_1 698 PVEYLRRLFQDLDYQSARNRLGKFGLEGHAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIES---IDALCEAINAYEG-GMVVVTHDARLIEATESQLWVVE 805
                 77777777777777778888999999999999999**********************************975...5556666666666.5789*********9988888876 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.7e-07   2.9e-05       5      48 ..     292     335 ..     288     351 .. 0.91
   2 !   35.0   0.0   3.3e-11   2.1e-09     128     217 ..     421     506 ..     394     576 .. 0.87
   3 !   12.8   0.0   0.00021     0.013      17      49 ..     633     665 ..     616     678 .. 0.82
   4 !   35.2   0.0     3e-11   1.9e-09     145     211 ..     735     798 ..     682     807 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.7e-07
   TIGR01978   5 dlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                  +++s  +k++  + +l++ +G  + ++GpnG+GkstL k++a 
  MMETSP1174-20130828|9383_1 292 SFTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 56788889999*****************************9985 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.3e-11
   TIGR01978 128 elleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhv 217
                   l +d+e++eR     fsGG + r  + + +++eP+l++LDe    lD++a+  + + ++k++   k+ll+++h + +l+++  + +h+
  MMETSP1174-20130828|9383_1 421 FGLGFDAEMQERATR-EFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWK---KTLLVVSHDQDFLNSVCQEILHL 506
                 557789999999876.5*************************************9999999997...57*************99888885 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00021
   TIGR01978  17 kglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 ++ln  ++      ++G nGsGkstL k l+ +
  MMETSP1174-20130828|9383_1 633 DELNFGIDMDSRICVVGNNGSGKSTLLKLLTDE 665
                 67788888888889**************99865 PP

  == domain 4    score: 35.2 bits;  conditional E-value: 3e-11
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelik 211
                  sGG k r   + l ll+P+l  LDe    lD++++ +++e +n ++    +++++th  rl+e+ +
  MMETSP1174-20130828|9383_1 735 LSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYE---GGMVVVTHDARLIEATE 798
                 7*******************************************995...69**********99765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.7e-06    0.0006      12      40 ..     306     334 ..     297     343 .. 0.87
   2 !   52.7   0.2   1.3e-16   8.4e-15      86     255 ..     397     564 ..     380     614 .. 0.67
   3 !   51.9   0.0   2.3e-16   1.4e-14       9     181 ..     632     788 ..     623     806 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.7e-06
   TIGR01188  12 vnlkveegevfglLGPnGAGKtttikmLt 40 
                  +l + +g  +gl+GPnG GK+t++km++
  MMETSP1174-20130828|9383_1 306 AELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 579999*********************86 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 1.3e-16
   TIGR01188  86 nlellgelyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiia.......edtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevds 255
                  ++++ +l  l  ++ae++a+++l  + +  e +++  +++sgG r r++la++l  +P ++ LDEPt  LD ++   + d++++    ++t+l+ +h+ +  +++++++  +d+ ki         + ++ee K+r +++    ++r +ke+k +  ++ + ++       +++ ++
  MMETSP1174-20130828|9383_1 397 LMKIYEQLSALGADAAESKARRILFGLGFDaEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW---KKTLLVVSHDQDFLNSVCQEILHLDEQKIRSykgnydtFKGMEEQKRRQQQKAYDQQERRLKEMKRSGITKKKAVE-------DLKSKK 564
                 478889999999************99998626778899**********************************98766666776655...679*********************9988875211100023334444455555555555555555533322222222.......221111 PP

  == domain 3    score: 51.9 bits;  conditional E-value: 2.3e-16
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtaren.lellge.lyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltt 181
                  d++n+ ++ ++ + ++G nG GK+t++k+Lt  +kP++G          r+p   R +igv  q+    e+L+  e  +e l + +++l  + a++r    l  + l  +a    ++ +sgG++ r+      + +P++lfLDEPt  LD ++ +a+ + i++ +  g+  ++ t
  MMETSP1174-20130828|9383_1 632 FDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI-------RRNP---RMRIGVYNQHFV--EKLPMNETpVEYLRRlFQDLDYQSARNR----LGKFGLEgHAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEG-GM--VVVT 788
                 4899************************************74.......4666...789***999864..6666655425544441456666666666....778888626667899*************************************9999999887643.22..3334 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00014    0.0088     459     499 ..     293     333 ..     282     335 .. 0.85
   2 !   26.8   0.0   6.2e-09   3.8e-07     586     670 ..     434     520 ..     428     527 .. 0.88
   3 !   35.3   0.0   1.6e-11   9.9e-10     452     510 ..     615     673 ..     603     676 .. 0.95
   4 !   24.4   0.0   3.2e-08     2e-06     587     644 ..     733     790 ..     727     807 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00014
   TIGR03797 459 FrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 F+ ++  +  + d  l+i  G + ++vG+ G GKStll+++
  MMETSP1174-20130828|9383_1 293 FTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMI 333
                 555666677788999***********************985 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 6.2e-09
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvve.qGsyee 670
                 +   SGG r R+ +Aral   P ++++DE T  LD ++     + l+k k t +v+ H    ++  ++ il l+e ++   +G+y+ 
  MMETSP1174-20130828|9383_1 434 TREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKTLLVVSHDQDFLNSvCQEILHLDEQKIRSyKGNYDT 520
                 5678******************************************************98777644889999999999653788875 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 1.6e-11
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                 iev+ v+F+Y ++ p+ +d++++ i+    + +vG+ GsGKStll+lL    kP+ G +
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 99**********************************************99999999876 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 3.2e-08
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHR 644
                   lSGGQ+ R++       +P++l++DE T  LD ++  + +e++++ +   +v+ H 
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHD 790
                 579*****************************************************95 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.2e-05    0.0013     494     529 ..     300     335 ..     293     336 .. 0.89
   2 !   31.8   0.0   1.5e-10   9.6e-09     606     699 ..     424     520 ..     407     531 .. 0.85
   3 !   29.3   0.0   9.4e-10   5.8e-08     478     538 ..     614     673 ..     591     697 .. 0.88
   4 !   22.7   0.0   8.9e-08   5.5e-06     618     688 ..     735     805 ..     731     811 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-05
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallen 529
                 k+++ d  +t+  G+   lVGP+G+GKSt   ++ n
  MMETSP1174-20130828|9383_1 300 KNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 567778899*********************999876 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.5e-10
   TIGR00958 606 gydtevgekGs.qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvve.lGthkq 699
                 g+d e+ e+ +   sgG + ri +ARAL  +P++++LDe t  LD +    l +  ++ ++t+l++ h     +  +++il l + +++  +G++++
  MMETSP1174-20130828|9383_1 424 GFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKTLLVVSHDQDFLNSvCQEILHLDEQKIRSyKGNYDT 520
                 67888888765269*********************************999****999999********98877653899****99999762476665 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 9.4e-10
   TIGR00958 478 kveFqdVsFsYPsrpdkpvl.kdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                  +e +dV+F Y   p+ pvl  +L+f +   + +++VG +GsGKSt   ll    +Pt G +
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYG--PNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 5999*******5..888886378************************************977 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 8.9e-08
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvekadkilvlkk 688
                 lsgGqk r+      + +P++L LDe t  LD e+  +l e  +a++  +++++h   ++e ++  l + +
  MMETSP1174-20130828|9383_1 735 LSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARLIEATESQLWVVE 805
                 8************99999******************************************99987666655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-05    0.0015      18      47 ..     305     334 ..     295     342 .. 0.90
   2 !   41.2   0.0   4.7e-13   2.9e-11     121     212 ..     427     514 ..     406     524 .. 0.87
   3 !   20.0   0.0   1.4e-06   8.5e-05       1      59 [.     615     675 ..     615     687 .. 0.89
   4 !   19.0   0.0   2.8e-06   0.00018     129     191 ..     733     791 ..     710     807 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.4e-05
   TIGR00968  18 dvdlevktGslvallGpsGsGkstllrvia 47 
                 d +l++ +G+  +l+Gp G Gkstll++ia
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 6799*************************9 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 4.7e-13
   TIGR00968 121 eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqv 212
                 +++++r   ++sGG r r++laral +ep +++ldep   ld +       wl    ++ k t ++v+hdq+    v ++i  l++ ki   
  MMETSP1174-20130828|9383_1 427 AEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA----VIWLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIRSY 514
                 578999999*********************************865....5688888888899999*********************999765 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.4e-06
   TIGR00968   1 ilianvskrfGdf..qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrill 59 
                 i++++v+ ++G    + +d++++ ++  s ++++G  GsGkstll++++   kp+ G i+ 
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRR 675
                 789********75224569*******************************99999999875 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.8e-06
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq 191
                  +lsGGq+ rv +     + pq+l+ldep   ld +  + l + +       +   v+vthd 
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY----EGGMVVVTHDA 791
                 579*******************************98766665554433....34456666765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.6e-15   2.9e-13     472     676 ..     302     519 ..     292     534 .. 0.75
   2 !   29.2   0.0   9.7e-10   6.1e-08     455     512 ..     614     671 ..     586     674 .. 0.83
   3 !   18.5   0.0   1.7e-06   0.00011     593     653 ..     734     794 ..     724     826 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 4.6e-15
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstltkllqr..lyvPekGrvl.vdgvdlaladPawlrrqvgvvlqenvlf.srsirdnialakPaiseekviaaa.kl..aGahdfiselkq.....GyetevgekGa.alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkive.sGkhe 676
                 ++ + +l i +G+  G+vGp G Gkstl k++    l +P +   l v++  +a   Pa     ++   + ++l  +r +  +++ +  + ++++++++  +l   Ga +  s+ ++     G++ e++e+ + ++sGG r ri+laral  +P +++lde t  ld ++   + + l++    +t+++++h  + + + +++il l++ ki   +G+++
  MMETSP1174-20130828|9383_1 302 LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLKLPPRVDALyVEQEVMADETPAFEAVLMADKERWALLEeERGLLAELKESPDEKKDARLMKIYeQLsaLGADAAESKARRilfglGFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDFLNSvCQEILHLDEQKIRSyKGNYD 519
                 5667899*************************744499998877662666666777777655444443333344324667777777666666666655531331146666555555444555********986379*********************************999999999986..579999999988886449********99964267766 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 9.7e-10
   TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekG 512
                  ie+++++f+y ++ p+++++l++ i     i +vG+ GsGkstl kll     P  G
  MMETSP1174-20130828|9383_1 614 LIEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDG 671
                 58999*******************************************9877777666 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 1.7e-06
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrls 653
                  lsGGq+ r+      +  P++l lde t  ld es +++ + +++   g  v++   rl 
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARLI 794
                 69****************************************9999888887777666664 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     5e-05    0.0031     468     521 ..     282     334 ..     265     337 .. 0.80
   2 !   31.1   0.0     3e-10   1.9e-08     596     693 ..     420     519 ..     399     525 .. 0.82
   3 !   36.5   0.0   7.3e-12   4.5e-10     474     535 ..     615     677 ..     588     700 .. 0.89
   4 !   12.1   0.0   0.00017      0.01     609     669 ..     732     791 ..     705     809 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-05
   TIGR01193 468 enlngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllv 521
                  +   d+++   + s  y+++++ d +l+i + ++  lvG  G Gkstl k++ 
  MMETSP1174-20130828|9383_1 282 WQNSLDVVIPSFTIS-AYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 444555555555544.69*********************************986 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 3e-10
   TIGR01193 596 klplGyqtelseeas.sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsv.akksdkiivldeGkiie.qGshk 693
                  + lG+++e+ e a+ + sgG + r++laral+ +  +++lde t +ldl      +++ l+  +kt++ v+h  +   +  ++i+ lde ki   +G+++
  MMETSP1174-20130828|9383_1 420 LFGLGFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA-VIWLDDYLQKWKKTLLVVSHDQDFlNSVCQEILHLDEQKIRSyKGNYD 519
                 5789******99876379*******************************755.45578888888*********98851567799*****999954256655 PP

  == domain 3    score: 36.5 bits;  conditional E-value: 7.3e-12
   TIGR01193 474 ievndvsysyGygsevl.edislkikknekitlvGlsGsGkstlakllvkffqaesGeillng 535
                 ievndv+++yG + +vl +++++ i+++++i++vG  GsGkstl kll +  ++++G i  n+
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNP 677
                 89************998588***********************************99998775 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 0.00017
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrl 669
                    +sgGqk r+ +    l   ++l lde t nld+     + e  ++  +  ++ v+h  
  MMETSP1174-20130828|9383_1 732 MRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEA-INAYEGGMVVVTHDA 791
                 4679*******************************8655555444.444466666666644 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.5e-07   1.5e-05      15      47 ..     302     334 ..     293     343 .. 0.84
   2 !   26.8   0.0   1.3e-08   7.9e-07     104     202 ..     415     511 ..     398     528 .. 0.74
   3 !   42.7   0.0   1.7e-13   1.1e-11      15     178 ..     631     787 ..     615     800 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.5e-07
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllkllt 47 
                 +  + +l++ + + ygl+GpnG Gkstllk+++
  MMETSP1174-20130828|9383_1 302 LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 44467899999********************96 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.3e-08
   TIGR03740 104 rieevlkivdlen.tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGkl 202
                 +   +l  ++++  ++ + +++fs G + r+ +a al+ +P l++ldePtn ld   +  l + ++ +++   t+++ sh    ++ ++ +i  + e k+
  MMETSP1174-20130828|9383_1 415 KARRILFGLGFDAeMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK---TLLVVSHDQDFLNSVCQEILHLDEQKI 511
                 5555555555554145677899********************************9999999999988876...566667766666666666666655555 PP

  == domain 3    score: 42.7 bits;  conditional E-value: 1.7e-13
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekk.kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvi 178
                 + +++++ ++ +s   ++G nG+Gkstllkllt  +++t G i  + r   r  + +   ++e+ ++  n t  e l  r l ++l+ +   + l + +le        +++s G k r+      l +P+ll ldePtn ld   i+ l e i++++  G+ v+
  MMETSP1174-20130828|9383_1 631 LFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPR--MRIGVYN-QHFVEKLPM--NETPVEYL--RRLFQDLDYQSARNRLGKFGLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYE-GGMVVV 787
                 458999999999999**************************9875544..3333333.245666555..44666665..6788999999999********97766516689***********999999**************************9985.466665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-05    0.0016      21      50 ..     306     335 ..     287     371 .. 0.76
   2 !   38.5   0.0     3e-12   1.9e-10     110     237 ..     412     539 ..     390     567 .. 0.79
   3 !   34.5   0.0   5.3e-11   3.3e-09       3     194 ..     615     793 ..     614     806 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.5e-05
   TIGR03522  21 vsfeaekGeivGflGPnGaGkstlmkiltg 50 
                   +++ +G+  G++GPnG Gkstl+k+++ 
  MMETSP1174-20130828|9383_1 306 AELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 5678999*******************9863 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 3e-12
   TIGR03522 110 lkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiva.dkkleelkaaekkkvievefeeeid 237
                  +++ ++++   G+ ae   +   ++s G+r r+ la+al  +P++++ldePt  ld n ++ + + +++   +kt+++ +h    ++++c++++ +++ ki   + + + +k +e++k  + +  ++ +
  MMETSP1174-20130828|9383_1 412 AESKARRILFGLGFDAEMQeRATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDFLNSVCQEILHLDEQKIRSyKGNYDTFKGMEEQKRRQQQKAYDQQ 539
                 5566667777778888755155679*****************************************99985..79**************************97624567777777766555554444444 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 5.3e-11
   TIGR03522   3 vevsdlsklygkqk..aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhk.kigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqe 194
                 +ev+d+  +yg +     de+ f ++  + +  +G nG+Gkstl+k+lt  +k++ G +  +    ++  +  ++++  lP  +         eyl+      +l+     +  ++ + + Gl+  +h   + +ls G + rv + +  l  P++l ldePt  ld + + ++ e i+    +  +++ th  + 
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLpvLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRN--PRMRIGVYNQHFVEKLPMNET------PVEYLRRL--FQDLD----YQSARNRLGKFGLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINA--YEGGMVVVTHDARL 793
                 789999999998752156***************************************88654..557777888888888885432......23676532..22344....44455667899******9736899********************************9988877777764..45556666665555 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0009     0.056      15      47 ..     302     334 ..     293     358 .. 0.87
   2 !   34.4   0.0   5.2e-11   3.2e-09     122     212 ..     427     513 ..     398     530 .. 0.88
   3 !   24.5   0.0   5.5e-08   3.4e-06       2      58 ..     616     674 ..     615     683 .. 0.88
   4 !   19.0   0.0   2.6e-06   0.00016     131     186 ..     734     787 ..     726     822 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0009
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalv 47 
                 ++ d +l++ +g+   ++G ng Gk+tllk + 
  MMETSP1174-20130828|9383_1 302 LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 566889999*********************986 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 5.2e-11
   TIGR03410 122 kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevva 212
                  em++R + + sGG +  +++aRaL  eP l++LDePt+ +  + +  +++ +++ +k    ++l+v +  df  ++ +++l l++ ++ +
  MMETSP1174-20130828|9383_1 427 AEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK----TLLVVSHDQDFLNSVCQEILHLDEQKIRS 513
                 589********************************************99999998887....799999999********999999887754 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 5.5e-08
   TIGR03410   2 evenlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeie 58 
                 ev++++ +Yg     ++ ++++ ++ ++ ++v+G+ng Gk+tllk l+  +k ++G i+
  MMETSP1174-20130828|9383_1 616 EVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 7899999999763135578*************************************987 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.6e-06
   TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlail 186
                 dLsGGq+  +      + +P+ll LDePt+ +    i+ + ++i++   e+++ ++
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY--EGGMVVV 787
                 8*****************************99866555555555532..2344333 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.003      0.18     304     331 ..     307     334 ..     292     370 .. 0.77
   2 !   41.7   0.0     2e-13   1.2e-11     397     508 ..     410     513 ..     389     534 .. 0.83
   3 !    9.5   0.0    0.0011     0.069     300     341 ..     632     673 ..     585     723 .. 0.69
   4 !   28.1   0.0   2.6e-09   1.6e-07     160     238 ..     726     800 ..     711     810 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.003
   TIGR03269 304 slevkekeifGlvGtsGaGkttlskila 331
                 +l++ ++  +GlvG  G Gk+tl k++a
  MMETSP1174-20130828|9383_1 307 ELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 5666666677777777777777777665 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 2e-13
   TIGR03269 397 elakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivk 508
                 + a+ ka  +l   Gfd e    + ++ + e+s G r r++la+ l  ep +++ldept  +d  +   + + + k     ++t ++vshd df+++vc+ +  + + ki  
  MMETSP1174-20130828|9383_1 410 DAAESKARRILFGLGFDAE----MQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK----WKKTLLVVSHDQDFLNSVCQEILHLDEQKIRS 513
                 5677888888888899865....67899***********************************8888887777766....56799**************9987777777655 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0011
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                  d++++ +       +vG  G+Gk+tl k+l   ++pt+G +
  MMETSP1174-20130828|9383_1 632 FDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 456666666666666777777777777777777777777744 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 2.6e-09
   TIGR03269 160 hrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdk 238
                 h  t   rdlsGG+k rvv+      +p ll+ dept  ld ++     +al ea+++++  +v+ +h +++ie    +
  MMETSP1174-20130828|9383_1 726 HAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESI----DALCEAINAYEGGMVVVTHDARLIEATESQ 800
                 4445556**********************************9987....588889999999*******99999875544 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0     7e-14   4.3e-12     356     552 ..     303     511 ..     286     521 .. 0.73
   2 !   25.9   0.0   1.3e-08   8.2e-07     308     398 ..     585     674 ..     575     682 .. 0.85
   3 !   17.8   0.0   3.6e-06   0.00022     476     526 ..     734     784 ..     722     809 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 7e-14
   TIGR02204 356 ldgldltvrpGetvalvGPsGaGkstllelllr...fydPqsGailldGvdlreldpe...el...rerlalvpqdsalfaa..svleniryGrpdasdeevea.aakaaeadefisklpeGydtllGergvt.LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGri 552
                 + + +lt+  G++  lvGP G Gkstll+++        P+  a+ ++   +++  p+   +l   +er al + +  l+a+  +  +  +  r+    e++ a  a+aae++     +  G+d+++ er+ + +sGG + ri++ara++ +  +++Lde t+ Ld ++   +   l++   ++t lv++h    + + +  i+ ld+ +i
  MMETSP1174-20130828|9383_1 303 FVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANgslKLPPRVDALYVEQEVMADETPAfeaVLmadKERWALLEEERGLLAElkESPDEKKDARLMKIYEQLSAlGADAAESKARRILFGLGFDAEMQERATReFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDFLNSvCQEILHLDEQKI 511
                 55789**************************863323567777777776666666654222223337899********9986223444555555555555554323445544444445677*********97549*******************************99988888888765..67899999976655442566666766665 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.3e-08
   TIGR02204 308 aerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                 +  + el+k   + ++  +  ++++     ie+++vkf+y        +d+l++ ++   ++ +vG  G+Gkstll+ll    +P++G i+
  MMETSP1174-20130828|9383_1 585 TAEIQELIKRPREYSVTLEFAEVAKLPPPLIEVNDVKFQYGPNL-PVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 456788888888888888888888888889**********6544.35679**************************************986 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 3.6e-06
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr 526
                  LsGGqk r+      l   ++L+Lde t+ Ld es +++ +a+++   g 
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGM 784
                 69*************************************999998765554 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   1.7e-14   1.1e-12      10     208 ..     299     512 ..     293     516 .. 0.76
   2 !   18.8   0.0   3.3e-06   0.00021       2      59 ..     616     677 ..     615     692 .. 0.81
   3 !   20.3   0.0   1.2e-06   7.5e-05     127     204 ..     733     806 ..     717     814 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.7e-14
   TIGR01277  10 ykhlplefdlsveaGervailGesGaGkstllnlia.G.f.lepasGeikvndkdhtrsapyerpvsm........lfqennlfahltvr...qniglGlkpglklnavqkekvedvarqv....Gia.dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                 +k+l++  +l++ +G +  ++G+ G Gkstll++ia G + l p   ++ v+++ +   +p    v m        l +e+ l+a l      +  +  +k   +l+a+  +  e+ ar++    G + ++ er   e+sGG r r++lar l  e  +++ldep   ld +     +  +    ++ k+tll+v+h+ + + ++ ++++ +++ ki+
  MMETSP1174-20130828|9383_1 299 NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAnGsLkLPPRVDALYVEQEVMADETPAFEAVLMadkerwalLEEERGLLAELKESpdeKKDARLMKIYEQLSALGADAAESKARRIlfglGFDaEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLN----AVIWLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIR 512
                 577888999**************************943322357788999999888888887665544222222216777889999975311133344466666777777666666666533311776256689********************************999964....56678899999***********************99999987 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3.3e-06
   TIGR01277   2 klddviyeyk.hlplef...dlsveaGervailGesGaGkstllnliaGflepasGeikvnd 59 
                 +++dv+++y  +lp+ f   ++ ++   r+ ++G+ G+Gkstll+l++  ++p++G i+ n 
  MMETSP1174-20130828|9383_1 616 EVNDVKFQYGpNLPVLFdelNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNP 677
                 5778888885356776622256789999****************************998765 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 1.2e-06
   TIGR01277 127 eelsGGqrqrvalar.clvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvved 204
                  +lsGGq+ rv +   cl+r++ +l+ldep   ld     e +  + +  +  +  +++vth+   + a+ sq  vved
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCElCLLRPQ-LLFLDEPTNNLDI----ESIDALCEAINAYEGGMVVVTHDARLIEATESQLWVVED 806
                 58*********98754999998.6789****99996....4444445666778889999****9999999999999987 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00091     0.057      13      48 ..     299     334 ..     289     366 .. 0.77
   2 !   37.8   0.0   4.6e-12   2.9e-10     140     236 ..     432     526 ..     412     536 .. 0.85
   3 !   11.2   0.0   0.00059     0.037       2      47 ..     615     662 ..     614     672 .. 0.85
   4 !   26.4   0.0   1.4e-08   8.5e-07     143     203 ..     733     791 ..     717     803 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00091
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrsln 48 
                 +k+   d +l i + +  +l+Gp G Gkstll+ + 
  MMETSP1174-20130828|9383_1 299 NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 445566889999999999***************985 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 4.6e-12
   TIGR00972 140 ksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpke 236
                 +++ + sGG + r+++aral +eP +++lDePt  LD  a+  +++ +q+ kk  t+++v h+ ++ + v +++  + e ++  +    + f+  +e
  MMETSP1174-20130828|9383_1 432 RATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK--TLLVVSHDQDFLNSVCQEILHLDEQKIRSYKGNYDTFKGMEE 526
                 445679*******************************************9887..8999********999999999888887777666666655544 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00059
   TIGR00972   2 levknlklfygeke.al.kdvnleikknkvtaliGpsGcGkstllrsl 47 
                 +ev+++k+ yg +  +l +++n+ i  ++ ++++G  G+Gkstll+ l
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLpVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLL 662
                 688999999998864432689************************987 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 1.4e-08
   TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnm 203
                   LsGGq+ r++      ++P++l lDePt  LD ++   + e i+  +    +v+vth+ 
  MMETSP1174-20130828|9383_1 733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEG--GMVVVTHDA 791
                 36*********************************999999999987765..689999985 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1    0.0018      0.11       3      26 ..     310     333 ..     308     344 .. 0.87
   2 !   34.3   0.0   6.4e-11     4e-09     104     189 ..     427     509 ..     420     518 .. 0.89
   3 !   40.5   0.1   8.3e-13   5.2e-11       8     174 ..     644     792 ..     637     807 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0018
   TIGR03771   3 vdkGellgllGpnGaGkttllrai 26 
                 + +G   gl+GpnG Gk+tll+ i
  MMETSP1174-20130828|9383_1 310 IGHGRHYGLVGPNGKGKSTLLKMI 333
                 5678899**************987 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 6.4e-11
   TIGR03771 104 teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngr 189
                 +e+++r+  e+sGG r r+ +aral ++p+l++ldep   ldl +   l + +++    ++++l+++hd     ++c+ ++ l+ +
  MMETSP1174-20130828|9383_1 427 AEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQK---WKKTLLVVSHDQDFLNSVCQEILHLDEQ 509
                 578999**************************************99999998776...578999*****99999999998877765 PP

  == domain 3    score: 40.5 bits;  conditional E-value: 8.3e-13
   TIGR03771   8 llgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkka.dfaavadalervkltela.drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdla 174
                  ++++G nG+Gk+tll+ +   +k++ G ++ +       r++iG   q   f    p+       +     + +lrr  ++ d+++ ++ l +  l+  a   ++ +lsGGq+ rv+      ++p+ll+ldep   ld+ s++ l e ++   + +  ++++thd  
  MMETSP1174-20130828|9383_1 644 RICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNP------RMRIGVYNQH--FVEKLPM-------NE--TPVEYLRRLFQDlDYQSARNRLGKFGLEGHAhTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAIN---AYEGGMVVVTHDAR 792
                 58899***********************998777......5899977764..6555554.......43..4578999987655**************8655156899*********************************999999887665...45566788899843 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   6.8e-15   4.2e-13      18     242 ..     305     528 ..     296     536 .. 0.75
   2 !   13.9   0.0     8e-05     0.005       2      56 ..     616     672 ..     615     691 .. 0.81
   3 !   23.1   0.0   1.2e-07   7.5e-06     135     209 ..     722     793 ..     708     806 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 6.8e-15
   TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilmt..le.tideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGl.adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeer 242
                 ++el++ +G++  l+Gp G Gkst+l+++    l+ +     + ve e +         ++ ad+   + + e+ G++ +     p +     +++   +   +   +ae++a ++l  +G+ a+ ++    ++sGG + r+++aral ++p ++++de+t  ld + v      l +  ++ + t+l+v+h+  f + +++ +l +d  ki       + f+  +e++
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLKlPPRVDALYVEQEVMADETPAFEAVLMADKERWALLEEERGLLAEL-KESPDEKKDARLMKIYEQLSALGADAAESKARRILFGLGFdAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIW----LDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIRSYKGNYDTFKGMEEQK 528
                 567889999******************98642233122445789999999999888889999**99999*****9*98665.555655554445544444444444555556666677778724556677889********************************876654....4566677889***************************87544445555443333 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8e-05
   TIGR03005   2 risdvtkrfg.eltvl.dglelevaaGekvaliGpsGsGkstilrilmtletideGs 56 
                 +++dv  ++g +l vl d+l++ ++   ++ ++G  GsGkst+l++l    +  +G 
  MMETSP1174-20130828|9383_1 616 EVNDVKFQYGpNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGL 672
                 5666666787457665599**************************997655555555 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.2e-07
   TIGR03005 135 Gladkadalp.aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf 209
                 Gl   a+++    lsGGqk rv       lrp++l++de+t  ld e ++ + + +       +  m++vth+ ++
  MMETSP1174-20130828|9383_1 722 GLEGHAHTIAmRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAIN----AYEGGMVVVTHDARL 793
                 5555555554147********************************999888777765....445678999998776 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00016      0.01      19      51 ..     302     334 ..     287     355 .. 0.89
   2 !   33.5   0.0   8.7e-11   5.4e-09     112     215 ..     413     513 ..     403     523 .. 0.81
   3 !   12.1   0.0   0.00029     0.018       6      64 ..     616     676 ..     612     683 .. 0.79
   4 !   22.5   0.0     2e-07   1.3e-05     134     193 ..     734     789 ..     709     797 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00016
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriia 51 
                  + d +l++ +g    l+GP G Gk+tLL++ia
  MMETSP1174-20130828|9383_1 302 LFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 456899**************************9 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 8.7e-11
   TIGR03265 112 aerveelLelvgls.gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieq 215
                 +++ +++L  +g++ + +e+    +sGG + r++Laral + P l++LDeP   LD      L   l+k ++    t ++v hdq+   s++  i  +++ ki  
  MMETSP1174-20130828|9383_1 413 ESKARRILFGLGFDaEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK----TLLVVSHDQDFLNSVCQEILHLDEQKIRS 513
                 5566666666666513456677889********************************999999887776665....6688******9999999999999888875 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00029
   TIGR03265   6 sieeiekefe.af.talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                 ++++++ +++ +    ++++++ +  +  +c++G  G Gk+tLL++++   k++ G i  +
  MMETSP1174-20130828|9383_1 616 EVNDVKFQYGpNLpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRN 676
                 556666666532213457899**************************99999999988776 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 2e-07
   TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvth 193
                  lsGGq+ rv +     l+P+lL+LDeP   LD    + L+e +++    +    ++vth
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGM----VVVTH 789
                 79**************************************99998876554....44555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.2e-11   7.6e-10      21     220 ..     306     511 ..     300     527 .. 0.84
   2 !   21.9   0.0   4.1e-07   2.5e-05      18      60 ..     632     674 ..     613     690 .. 0.81
   3 !   22.9   0.0     2e-07   1.2e-05     111     215 ..     701     804 ..     690     809 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.2e-11
   TIGR03411  21 lslsveegelrviiGpnGaGkttllDvit.Gktr.pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadk.....svlallfarlskeekerieevleligLeekadkkag.lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkv 220
                  +l++ +g    ++GpnG Gk+tll +i+ G  + p + ++l+ +++++  ++     + ++ k   + + ee   l  l+ +  ++k     +++++l a  +++++++ +++l  +g +++++++a+ + s G + ++ ++  l  ep+l++lDeP+  +  +      + l++ +  ++++vv hD +f++++ +++  l e k+
  MMETSP1174-20130828|9383_1 306 AELTIGHGRHYGLVGPNGKGKSTLLKMIAnGSLKlPPRVDALYVEQEVMADETPAFEAVLMADKERWALLEEERGLLAELKESPDEKKdarlmKIYEQLSALGADAAESKARRILFGLGFDAEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWK--KTLLVVSHDQDFLNSVCQEILHLDEQKI 511
                 678899999999***************9746554477788899999999999999999999********************998887722222345667777778888999999999999988877765289*******************************999999999999865..689**************99988887776 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4.1e-07
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvl 60 
                  ++l++ ++ ++  +++G nG+Gk+tll ++t  ++p++G + 
  MMETSP1174-20130828|9383_1 632 FDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 4899************************************876 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 2e-07
   TIGR03411 111 llfarlskeekerieevleligLeekadkkag.lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvl 215
                  l+  +++ + ++ ++ l   gLe +a++ a   Ls Gqk ++    l + +p+ll+lDeP+  +  e  +   e +++   e  +vvv hD   +++ ++++ v+
  MMETSP1174-20130828|9383_1 701 YLRRLFQDLDYQSARNRLGKFGLEGHAHTIAMrDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAY--EGGMVVVTHDARLIEATESQLWVV 804
                 5555555666667778888999999999988527****************************999887777777777654..55799*********9999888776 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00011    0.0071      22      54 ..     301     333 ..     292     353 .. 0.88
   2 !   29.7   0.0   1.4e-09   8.6e-08     122     221 ..     409     505 ..     397     508 .. 0.84
   3 !   15.9   0.0   2.3e-05    0.0015      17      66 ..     624     674 ..     619     682 .. 0.86
   4 !   17.0   0.0   1.1e-05   0.00067     127     210 ..     712     792 ..     705     803 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00011
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllksl 54 
                 + + + +l++  G    l G+ G Gkstllk++
  MMETSP1174-20130828|9383_1 301 NLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMI 333
                 5667899************************98 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.4e-09
   TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrele 221
                  ++a++ka+++l  l     + + a   fsGG + R+ +aral  +  +++LdePt  Ld +   +v+ l + +++   +l+ + hd++  ++v++  l+
  MMETSP1174-20130828|9383_1 409 ADAAESKARRILFGLGFDAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLN---AVIWLDDYLQKWKKTLLVVSHDQDFLNSVCQEILH 505
                 5789999*************************************96667789*******754...46777777777778999999*99999999988775 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2.3e-05
   TIGR02324  17 gGvklpvl.kevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66 
                  G +lpvl +e+++ ++    +++ G+ G+Gkstllk l  + +p  g i+
  MMETSP1174-20130828|9383_1 624 YGPNLPVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 5677887537899***************************99999999876 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 1.1e-05
   TIGR02324 127 akakellarlniperLWslaPatfsGGekqRvniaraliadrPiLL.LdePtasLdaanrkvvvelikeakargaaligifhdee 210
                 + a++ l ++ +  +  ++a    sGG k Rv      +  rP LL LdePt  Ld   +++  e i+   a    ++ + hd+ 
  MMETSP1174-20130828|9383_1 712 QSARNRLGKFGLEGHAHTIAMRDLSGGQKARVVFCELCLL-RPQLLfLDEPTNNLDIESIDALCEAIN---AYEGGMVVVTHDAR 792
                 66778888888888888899999**********9998888.7766549*******9999987777665...44556777777765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   6.2e-15   3.8e-13      13     217 ..     303     519 ..     292     560 .. 0.74
   2 !    8.3   0.0    0.0042      0.26      17      56 ..     636     675 ..     631     685 .. 0.84
   3 !   20.9   0.0   6.2e-07   3.9e-05     129     167 ..     732     770 ..     723     810 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 6.2e-15
   TIGR02142  13 eLdvdlelpgkgvtalFGrsGsGktslirlia.GLtr..pdegeivldgevlqdsrk..kiilppekRrvgyvFqeArLFpHlsv....ren..Lr..YGlkraraee.rriseekvielLgieh.LleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaa.gkle 217
                  +d++l++      +l G  G Gk++l+++ia G ++  p+   ++++ ev++d +   + +l ++k r +    e  L + l+     +++  L   Y   +a +++  + +  +++  Lg +  + eR +++ sGG + R++++RAl  +P L+++DeP   LD +    +  yL++ ++     +l vsH+ d ++ + ++++ l++ ++++  g+ +
  MMETSP1174-20130828|9383_1 303 FVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAnGSLKlpPRVDALYVEQEVMADETPafEAVLMADKERWALLEEERGLLAELKEspdeKKDarLMkiYEQLSALGADaAESKARRILFGLGFDAeMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK----TLLVVSHDQDFLNSVCQEILHLDEQKIRSYkGNYD 519
                 456777776656789****************9554442257789*********987512568999***********99999987422222221132236555555544044566678888999862668*************************************9876666666666555....5799********************99998514444 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0042
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivl 56 
                 ++ ++ + ++ + G+ GsGk++l++l++  ++p++g i  
  MMETSP1174-20130828|9383_1 636 NFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRR 675
                 555666678899*****************99999998865 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 6.2e-07
   TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrk 167
                  ++LsGG k Rv      L +P+LL +DeP   LD ++ 
  MMETSP1174-20130828|9383_1 732 MRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESI 770
                 689********************************9865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00036     0.023       3      46 ..     305     351 ..     303     423 .. 0.77
   2 !   26.3   0.0   1.7e-08     1e-06     106     176 ..     428     494 ..     412     508 .. 0.84
   3 !   16.3   0.0   1.9e-05    0.0012       3      43 ..     634     674 ..     632     681 .. 0.88
   4 !   21.5   0.0     5e-07   3.1e-05     106     174 ..     726     790 ..     707     797 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00036
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliag..lekp.tsgavileg 46 
                 d +l+i +g    l+g  g gkstll +ia   l+ p    a+++e 
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLKLPpRVDALYVEQ 351
                 6789*************************842255441445555555 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.7e-08
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 e +++ + ++sgg + r+++aral i p l++ldep   ld  +   l++ l    ++ + t l+v+hd d
  MMETSP1174-20130828|9383_1 428 EMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYL----QKWKKTLLVVSHDQD 494
                 56788899*********************************87777776655....344668888999877 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.9e-05
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavi 43 
                 ++++ i     i+++g  g gkstll l++   kpt+g ++
  MMETSP1174-20130828|9383_1 634 ELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR 674
                 67788888899**************************9886 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 5e-07
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 +a    + +lsgg k rv       +rp+ll+ldep   ld  +     + l + ++  +  +++vthd
  MMETSP1174-20130828|9383_1 726 HAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESI----DALCEAINAYEGGMVVVTHD 790
                 455567899********************************8555....45566677778888999998 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.2e-14     2e-12      11     196 ..     305     499 ..     298     513 .. 0.78
   2 !   15.1   0.0   3.2e-05     0.002      11      50 ..     634     673 ..     628     687 .. 0.90
   3 !   15.6   0.0   2.3e-05    0.0014     107     189 ..     711     790 ..     694     797 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.2e-14
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnr..l.iePtaGkilidGediaeisda..elrevrrkkiamviqkialfPhmtildnislgl.......ellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrl 196
                 d++l i +G  + ++G+ G Gkstl++++    l + P    ++++ e +a+  +a   +    + + a++  + +l+       + +          +l  + ++  + ka+  l  +++  e ++r   e+sGG + r+ laral +eP l+++de+   ld      l d l+    k +kt++ ++hd d    +
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIANgsLkLPPRVDALYVEQEVMADETPAfeAVLMADKERWALLEEERGLLAELKESPDEKKDArlmkiyeQLSALGADAAESKARRILFGLGFdAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQ----KWKKTLLVVSHDQDFLNSV 499
                 799**************************643342567788999999999988875222335567888999999999988776555444440000111555566678899***********889****************************************877777777665....57899*******9965555 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.2e-05
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                 ++++ i+    i+++G  GsGkstl++ll   + Pt G i
  MMETSP1174-20130828|9383_1 634 ELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 66788888889*************************9976 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 2.3e-05
   TIGR01186 107 kekalealklvdleeyedryP.delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  + a++ l + +le+++++    +lsGG++ rv         P+ll++de+   ld    d     l +  + ++  +v +thd
  MMETSP1174-20130828|9383_1 711 YQSARNRLGKFGLEGHAHTIAmRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESID----ALCEAINAYEGGMVVVTHD 790
                 57899*************986379*************999***************964444....4444445556666777776 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00011    0.0065       8      55 ..     287     334 ..     281     343 .. 0.86
   2 !   27.9   0.0   3.9e-09   2.4e-07     132     211 ..     430     504 ..     413     519 .. 0.82
   3 !   14.3   0.0   5.2e-05    0.0033      10      65 ..     616     673 ..     613     678 .. 0.88
   4 !   18.8   0.0   2.3e-06   0.00014     129     199 ..     724     790 ..     712     799 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00011
   TIGR03258   8 GvvleslrvaygarvvlddlsleieaGellallGksGsGkttllrava 55 
                  vv+ s++++   + ++ d  l+i+ G    l+G+ G Gk+tll+++a
  MMETSP1174-20130828|9383_1 287 DVVIPSFTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 577888888766777778899**************************9 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 3.9e-09
   TIGR03258 132 aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkil 211
                  +r   ++sGG + r++laral ++p +++ldep   ld +    + + l++ ++     t+l+v+hd+d    + + il
  MMETSP1174-20130828|9383_1 430 QERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK-----TLLVVSHDQDFLNSVCQEIL 504
                 45677899*******************************9988888888877655.....77999999986666655555 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 5.2e-05
   TIGR03258  10 vleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrl 65 
                  +++++ +yg +  v++d+l + i+    + ++G+ GsGk+tll++++  vk+  G +
  MMETSP1174-20130828|9383_1 616 EVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 567788889887446789**********************************998866 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 2.3e-06
   TIGR03258 129 sdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                    a+ +    lsGGq+ rv +     +rp++l+ldep   ld +   ++ e ++a         +++vthd
  MMETSP1174-20130828|9383_1 724 EGHAHTIAmRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYE-----GGMVVVTHD 790
                 55555554157********************************998888888887753.....455666776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.1e-06   0.00044      17      51 ..     300     334 ..     287     359 .. 0.81
   2 !   25.8   0.0   1.7e-08     1e-06     134     210 ..     435     508 ..     421     552 .. 0.79
   3 !   31.2   0.0   3.8e-10   2.4e-08       5     179 ..     615     778 ..     612     806 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.1e-06
   TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvl 51 
                 k +  d  +ti +g  +gl+gpng gkst+ +++ 
  MMETSP1174-20130828|9383_1 300 KNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 444446789***********************985 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.7e-08
   TIGR01288 134 adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvlea 210
                  ++sgg + r++laral  +p l++ldept  ld  a  +iw     l    kt+l+ +h  +  + +c+ +  l++
  MMETSP1174-20130828|9383_1 435 REFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA--VIWLD-DYLQKWKKTLLVVSHDQDFLNSVCQEILHLDE 508
                 579*******************************988..67833.23445578999999999999999988776654 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 3.8e-10
   TIGR01288   5 idlvgvsksygdk..vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskad.vrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlr 179
                 i++ +v+  yg +  v+ ++l f i     + ++g ng+gkst+ +l+   + p  g i           r  r +igv +q     +++ + e  + + r + ++  + +++   l +f  le +a+ + + dlsgg k r+ ++   +  pqll ldept  ld  +   + e + 
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNlpVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIR----------RNPRMRIGVYNQHF--VEKLPMNETPVEYLRRL-FQDLDYQSARNRLGKFG-LEGHAHtIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAIN 778
                 788899999998744788***************************************984..........77899****99953..23344455555454433.23445566667777775.88887625789***************9*****************887776666655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00064      0.04     345     380 ..     299     334 ..     249     337 .. 0.89
   2 !   22.5   0.0   1.2e-07   7.7e-06     458     533 ..     423     497 ..     409     516 .. 0.83
   3 !   25.8   0.0   1.2e-08   7.7e-07     332     390 ..     615     673 ..     603     676 .. 0.95
   4 !   13.3   0.0   7.2e-05    0.0045     470     534 ..     734     796 ..     720     816 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00064
   TIGR02203 345 drealdsislkveaGevvalvGrsGsGkstlvnllp 380
                 +++ + + +l++  G+   lvG+ G Gkstl+++++
  MMETSP1174-20130828|9383_1 299 NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 5566678899************************96 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.2e-07
   TIGR02203 458 eGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstie 533
                  G+d e+ e++++  sGG R R+++aRal+ +  +++LDe t  LD ++   + + L++   ++t lv++h    ++
  MMETSP1174-20130828|9383_1 423 LGFDAEMQERATReFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDFLN 497
                 588888888877549********************************9999999999986..468999999765555 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 1.2e-08
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                 +e+++v+f+y+++    +d++++ ++   ++ +vG  GsGkstl++ll+  ++p++G i
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 899*********999999***********************************999976 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 7.2e-05
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek 534
                  LsGGq+ R+      l    +L LDe t  LD es  ++ +a+++       +v+ h    ie 
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEG--GMVVVTHDARLIEA 796
                 69************9999999***************9999999887644..35677776666655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0     3e-11   1.9e-09       3     215 ..     304     522 ..     302     536 .. 0.73
   2 !   26.2   0.0   1.6e-08   9.9e-07       3     201 ..     633     806 ..     631     827 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3e-11
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalai....lglldk.eltktsGeilldgkelaal.alrgreialilqnPrsafnPlltikeqllet..lkalekls....kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                  d +l++ +g+  +lvG  G Gks+  + i    l+l +  ++  ++ e++ d+ +  +   + ++e   +l + r  +  l    ++ +++  +k+ e+ls    + a++++ + l   gL   +e+ +    e+sGG   R+ +a al +e++l++ DePt  lD+ + + + ++l    +k   ++l+++hD   +  + +e++ +++ ki   +   + f+
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIangsLKLPPRvDALYVEQEVMADETPAFEAvLMADKERWALLEEERGLLAELKESPDEKKDArlMKIYEQLSalgaDAAESKARRILF--GLGFDAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYL----QKWKKTLLVVSHDQDFLNSVCQEILHLDEQKIRSYKGNYDTFK 522
                 5778999999*************97654441111444443256789999**9999987663667788889999999999988876655444321333333332123334444455554..5555599999*************************************98876655555....5566789******************999999876666666665 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.6e-08
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmek 201
                 +++n+ + ++  + +vG+ GsGks+    +l+ll  e+  t+G i+ + +    + + +++  ++ + P++  +P+  +++ ++        l  ++a     + l + gLe  ++ + +   +lsGG   Rv+     ll++ ll+ DePt +lD+ +    ++ l e  +  + g++++thD + +     ++ v+e+
  MMETSP1174-20130828|9383_1 633 DELNFGIDMDSRICVVGNNGSGKST----LLKLLTDEVKPTDGLIRRNPR--MRIGVYNQH--FVEKLPMNE-TPVEYLRRLFQ-------DLDyQSA----RNRLGKFGLEGHAHTIAM--RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIES----IDALCEAINAYEGGMVVVTHDARLIEATESQLWVVED 806
                 6788888888888888888888875....678888888888887765433..233333333..344445543.45544443222.......2221333....478899999988887776..58**********9999999***************876....6777777788899************999999888875 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.041       2.5       1      17 [.     318     334 ..     318     351 .. 0.93
   2 !   30.1   0.0   8.6e-10   5.3e-08      92     169 ..     428     501 ..     404     519 .. 0.80
   3 ?    4.9   0.0      0.04       2.5       2      26 ..     648     672 ..     647     677 .. 0.84
   4 !   20.6   0.0   6.8e-07   4.2e-05      97     161 ..     731     791 ..     712     801 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.041
   TIGR01187   1 lLGpsGsGkttlLrlla 17 
                 l+Gp G Gk+tlL+++a
  MMETSP1174-20130828|9383_1 318 LVGPNGKGKSTLLKMIA 334
                 78*************99 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 8.6e-10
   TIGR01187  92 efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsd 169
                 e+ +r   ++sGG r r++lara+  +P +++lDep   LD +    +   l++ ++    t+++v hDq+   ++ +
  MMETSP1174-20130828|9383_1 428 EMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKK----TLLVVSHDQDFLNSVCQ 501
                 78889999*********************************9877776666666655....77889999976555555 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.04
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGk 26 
                 +G  GsGk+tlL+ll    ++  G 
  MMETSP1174-20130828|9383_1 648 VGNNGSGKSTLLKLLTDEVKPTDGL 672
                 799************9877777765 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 6.8e-07
   TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                  + +lsGGq+ rv +      +P++L+lDep   LD +  d + + ++a +      +v+vthD 
  MMETSP1174-20130828|9383_1 731 AMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEG----GMVVVTHDA 791
                 4578********************************9888877766655443....357788886 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.6e-10   2.2e-08      26     171 ..     312     467 ..     295     504 .. 0.75
   2 !   21.7   0.0   4.1e-07   2.6e-05       2      64 ..     613     679 ..     612     696 .. 0.87
   3 ?    6.9   0.0     0.013      0.81     135     176 ..     728     772 ..     711     806 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 3.6e-10
   TIGR02323  26 pGevlgivGesGsGkstllkalaa...rlladaGevtyesrsr......elellalseaerrlllrtewGlvhqnpr.GlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                  G+  g+vG  G Gkstllk +a+   +l +   ++ y +++       + e + +++ er  ll  e Gl+ +       ++ +    i e+l a+ga      ++   +    + +++    ++fsGG + r+ +ar+l  +p l+++ ept  l
  MMETSP1174-20130828|9383_1 312 HGRHYGLVGPNGKGKSTLLKMIANgslKLPPRV-DALYVEQEVmadetpAFEAVLMADKERWALLEEERGLLAELKEsPDEKKDARLMKIYEQLSALGADAAESKARRILFGLGFDAEMQERATREFSGGWRMRISLARALFIEPTLMMLdEPTNHL 467
                 578899****************96433555554.444443332111123578899****************998877244445555689*********9655444444444444455555557899**********************999**9876 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.1e-07
   TIGR02323   2 pllevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrs 64 
                 pl+ev+++  +yg++  +    ++f +     +++vG+ GsGkstllk l+ ++ +++G ++ + r 
  MMETSP1174-20130828|9383_1 613 PLIEVNDVKFQYGPNLPVLfdeLNFgIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPRM 679
                 89999999999*99987643468998888999***************************99877665 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.013
   TIGR02323 135 arikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqa 176
                   i  + +sGG + r+      + rp+l+f+ ept  l   s++a
  MMETSP1174-20130828|9383_1 728 HTIAMRDLSGGQKARVVFCELCLLRPQLLFLdEPTNNLdiESIDA 772
                 45778999***************************9986335544 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.9e-08     3e-06      21     212 ..     307     504 ..     300     513 .. 0.76
   2 !    9.0   0.0    0.0015     0.093      24      48 ..     639     663 ..     617     671 .. 0.82
   3 !   21.2   0.0   2.9e-07   1.8e-05     381     447 ..     712     778 ..     700     797 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.9e-08
   TIGR02633  21 dlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkass......irdterkGiviihqeltlvkelsvleniflG...neitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtis 212
                 +l++  G   +l G nG Gkstl+k+++    +     + l+ ++e+ a +      +  ++++  +++ +e  l+ el    +        +i  + + +  da   +a+++l  l  da+ + r+  ++ +G +  + +a+al  +  l++ldep+  l  + +  l d ++  k+     + +sh  + +++v+++i 
  MMETSP1174-20130828|9383_1 307 ELTIGHGRHYGLVGPNGKGKSTLLKMIANGSLKLPPRVDALYVEQEVMADEtpafeaVLMADKERWALLEEERGLLAELKESPDEKKDarlMKIYEQLSALGADAAESKARRILFGLGFDAEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKT---LLVVSHDQDFLNSVCQEIL 504
                 678889999*****************9875555555555555555555544111111334445556889999999999875533322200134555555677889999*****************************************************999988888887777664...5678999999999999885 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0015
   TIGR02633  24 lraGeivslcGenGaGkstlmkvls 48 
                 ++    + + G+nG+Gkstl+k+l+
  MMETSP1174-20130828|9383_1 639 IDMDSRICVVGNNGSGKSTLLKLLT 663
                 5555667889*************97 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 2.9e-07
   TIGR02633 381 kaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklin 447
                 ++ ++ + ++ +      +++  lsGG++ + v++ l ll+p++l ldept  +d+ +   +   in
  MMETSP1174-20130828|9383_1 712 QSARNRLGKFGLEGHAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAIN 778
                 556666777777788888999**********************************987666655555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0031       0.2      21      51 ..     303     333 ..     286     355 .. 0.85
   2 !   24.9   0.0   3.1e-08   1.9e-06     131     218 ..     427     510 ..     400     527 .. 0.81
   3 ?    6.4   0.0     0.014      0.85      21      61 ..     632     672 ..     614     691 .. 0.81
   4 !   12.3   0.0   0.00021     0.013     138     205 ..     732     795 ..     698     809 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0031
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv 51 
                 + + +l + +g+ +g++g  g gkstl++ +
  MMETSP1174-20130828|9383_1 303 FVDAELTIGHGRHYGLVGPNGKGKSTLLKMI 333
                 5678899********************9876 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.1e-08
   TIGR02314 131 sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkge 218
                 ++ ++    ++sgg + r+++aral  ep +++ de t  ld  +       l +  ++ + t+l+++h+ d + ++c+e+  +d+ +
  MMETSP1174-20130828|9383_1 427 AEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVI----WLDDYLQKWKKTLLVVSHDQDFLNSVCQEILHLDEQK 510
                 46677778899*******************************87654....5667777788899***************998777655 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.014
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsga 61 
                 +d++++ +     + v+g  g+gkstl++ +    kpt+g 
  MMETSP1174-20130828|9383_1 632 FDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGL 672
                 467778888888889**************999999999986 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 0.00021
   TIGR02314 138 psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvk 205
                   +lsggqk rv         p++l+ de t  ld    +si  l   in   g  ++++th+  ++ 
  MMETSP1174-20130828|9383_1 732 MRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDI---ESIDALCEAINAYEG-GMVVVTHDARLIE 795
                 468*******************************95...677788888886555.5667788776665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     8e-09     5e-07      12     198 ..     273     468 ..     263     492 .. 0.77
   2 ?    4.6   0.0     0.033       2.1      54      73 ..     645     664 ..     642     675 .. 0.88
   3 !   26.7   0.0   6.8e-09   4.2e-07     148     204 ..     721     772 ..     702     788 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 8e-09
   TIGR00955  12 trvaqdge.kkllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkc....adtrig.......vpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLD 198
                 t+++++ + ++ +++++   ++ ++ +k+l  +   ++  G    ++G+ G GK+TLl+++a+ s k   +  +  ++ e +  +e  a  a ++ d      l  +e+  + a+l+ + + +k+ +  ++ e l++lg   +    +  + g       ++  ++  SgG r R++la  l  +P+l+++DEPT  LD
  MMETSP1174-20130828|9383_1 273 TAIDEKDStWQNSLDVVIPSFTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIANGSLKLPPRVDALYVEQEVMA-DETPAFEAVLMADKERWALL--EEERGLLAELKESPDEKKDARLMKIYEQLSALGADAAeskaRRILFGlgfdaemQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLD 468
                 55555555577777777777777777888888888888889999999***************999988887777888877666.88899999999988877777..5666677999999998899999999999999997654111044444422222212445789*******************************9 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.033
   TIGR00955  54 lAvlGsSGaGKtTLlnalaf 73 
                 + v+G  G+GK+TLl+ l+ 
  MMETSP1174-20130828|9383_1 645 ICVVGNNGSGKSTLLKLLTD 664
                 5799************9975 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 6.8e-09
   TIGR00955 148 lgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaas 204
                  gL+  a+t+      ++ lSgG++ R+ + +  l  P+lLf+DEPT  LD  s   
  MMETSP1174-20130828|9383_1 721 FGLEGHAHTIA-----MRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDA 772
                 55666666654.....588********************************776555 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   4.1e-11   2.5e-09     417     641 ..     244     494 ..     231     520 .. 0.71
   2 ?   -2.8   0.1       5.3   3.3e+02      36      64 ..     527     555 ..     501     594 .. 0.43
   3 !   14.8   0.0   2.5e-05    0.0016     463     507 ..     626     671 ..     612     686 .. 0.82
   4 !   16.5   0.0   7.8e-06   0.00048     583     647 ..     734     798 ..     727     806 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 4.1e-11
   TIGR00954 417 lnfkrprveekesaeee.srkselvagrgkveaqdngikfeniplvtP......egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedf...ker...........glsdkdLeqiLeevkLedlleregg..................wda.vqd.WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrks 641
                 +++++ r+  +e+ + + s +++  a + +  ++++    + +++v+P       ++ l  + ++ + +G+h  ++GPnG GKs l ++++      +g l  p++    yv q          + ++  d+       +er           + +d+ L++i e++          +                  +da +q+    + sgG + Ri++AR ++  P   +LDE t+ + ++    l + +++ + tll vsh + 
  MMETSP1174-20130828|9383_1 244 DRENKLREIAEEKERVQrSVEGQQFACSQTAIDEKDSTWQNSLDVVIPsftisaYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIA------NGSLKLPPRVDALYVEQEVMADETPAFEAVLMADKERWAlleEERgllaelkespdEKKDARLMKIYEQLS---------AlgadaaeskarrilfglgFDAeMQErATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKWKKTLLVVSHDQD 494
                 333333333222222222444444444555555555566789******99998867888888899999*******************9986......7****************976666667788888887654311134455555555555555555666555443.........2444444566799999999776455514679*****************************98888777788999***********9764 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 5.3
   TIGR00954  36 kkkravdaredesskeelkkesknselek 64 
                 +k+r++++  d++    ++++ +  +++k
  MMETSP1174-20130828|9383_1 527 QKRRQQQKAYDQQERRLKEMKRSGITKKK 555
                 22222222222222222222222111111 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 2.5e-05
   TIGR00954 463 PegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg.elWPvyg 507
                 P+  vl +eL+f +   + + ++G nG GKs l ++l+ e+ P+ g
  MMETSP1174-20130828|9383_1 626 PNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTdEVKPTDG 671
                 88899******************************99735666655 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 7.8e-06
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLwkyHe 647
                  LsgG+k R+ +  l   +P+   LDE t+ + ++  d+l e++  ++  ++ v+h   L+   e
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARLIEATE 798
                 69******************************************************999987655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.7e-07   2.9e-05     433     532 ..     392     495 ..     291     530 .. 0.61
   2 !   10.8   0.0   0.00046     0.029     335     392 ..     615     673 ..     580     684 .. 0.84
   3 !   11.3   0.0   0.00033     0.021     471     545 ..     734     808 ..     725     826 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.7e-07
   TIGR01192 433 redatdeevveaaka..aaasdfiekrlk...gydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlst 532
                 ++da + +++e   a  a a++    r+    g+d+ + er +r +sgg r r+++ara++ +  +++lde t  ld+++ + + d ++    ++t ++++h    
  MMETSP1174-20130828|9383_1 392 KKDARLMKIYEQLSAlgADAAESKARRILfglGFDAEMQERATReFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYLQKW--KKTLLVVSHDQDF 495
                 4455555555543321122333333333233389999****98658*********************************999988766543..3466667776554 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00046
   TIGR01192 335 vefrdisfefa.nssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqi 392
                 +e +d++f++  n      ++ f +     + +vg  g+gk+tl+ ll    +p+ g i
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGpNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 7888999999614555556799****************************99**99988 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00033
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqg 545
                  lsgg++ r+      l    +l lde t  ld+e+   + +ai+a +          rl    e++l +  dq 
  MMETSP1174-20130828|9383_1 734 DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARLIEATESQLWVVEDQD 808
                 69***********************************9*******998877766666688888888888888874 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0038      0.24    1165    1264 ..     238     332 ..     233     338 .. 0.71
   2 !   16.0   0.0   5.3e-06   0.00033     549     583 ..     437     471 ..     428     552 .. 0.78
   3 !   15.8   0.0     6e-06   0.00037     440     581 ..     629     767 ..     617     778 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0038
   TIGR01271 1165 vdglmrsvsrvfkfidlpqeeskpkkstkkyq.lskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsa 1264
                  v  lm+  +r  k  ++ +e+ + ++s + +q  +++  i++k    +w ++ ++ + ++t+      + ++ d  +++  g++ gl+g  g gkstll  
  MMETSP1174-20130828|9383_1  238 VKKLMK--DRENKLREIAEEKERVQRSVEGQQfACSQTAIDEKD--STWQNSLDVVIPSFTISAY--NKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKM 332 
                  555665..455566666666666666555443134455666654..5799999999999998644..4678889999*********************975 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 5.3e-06
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvt 583
                 +sgg r rislara++ +  l +ld p ++ld+ +
  MMETSP1174-20130828|9383_1 437 FSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA 471
                 79******************************864 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 6e-06
   TIGR01271 440 pvl.knislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfsp...qvswimpgtikdniifglsydeyrytsvikacqleedialla...ekdktvlgeggitlsggqrarislaravykdadlylldspfsyldv 581
                 pvl  ++++ ++    ++v g  gsgks+ll ++  e++p++g i+   r+        +   +p        +   +++  y+s  +       + ++    +   +++      lsggq+ar+ ++       +l +ld p + ld+
  MMETSP1174-20130828|9383_1 629 PVLfDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRNPRMRIGVynqHFVEKLPMNETPVEYLRRLFQDLDYQSARN------RLGKFGlegHAHTIAMR----DLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDI 767
                 66625799999*99********************************998875433000222233322222222333344445544332......22222200022222222....3666666666666666666666666666666666 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.022       1.4      42      71 ..     305     334 ..     300     345 .. 0.91
   2 !   31.3   0.1   3.5e-10   2.2e-08     155     227 ..     427     495 ..     403     515 .. 0.84
   3 ?    2.3   0.0      0.22        14      51      69 ..     644     661 ..     632     668 .. 0.82
   4 ?    3.0   0.0      0.14       8.7     153     196 ..     722     766 ..     710     795 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.022
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravn 71 
                 da l++ +G    l+G  G Gks+ll+ + 
  MMETSP1174-20130828|9383_1 305 DAELTIGHGRHYGLVGPNGKGKSTLLKMIA 334
                 789***********************9874 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 3.5e-10
   TIGR03415 155 aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdlde 227
                 ae +++ + e+sGG + r+ lara+ +e  ++++deP   ld      l d l    +k kkt++ vshd d 
  MMETSP1174-20130828|9383_1 427 AEMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWLDDYL----QKWKKTLLVVSHDQDF 495
                 5789999***********************************88888888866....5789*********885 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.22
   TIGR03415  51 eilvlmGlsGsGkssllra 69 
                  i+v +G  GsGks+ll+ 
  MMETSP1174-20130828|9383_1 644 RICV-VGNNGSGKSTLLKL 661
                 4666.699********985 PP

  == domain 4    score: 3.0 bits;  conditional E-value: 0.14
   TIGR03415 153 glaeWadk.kvgelsGGmqqrvGlarafateadillmdePfsald 196
                 gl+  a++  + +lsGG + rv +     +  ++l++deP   ld
  MMETSP1174-20130828|9383_1 722 GLEGHAHTiAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLD 766
                 5555554414579****************************9999 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.3e-06   0.00014     361     547 ..     307     511 ..     294     515 .. 0.73
   2 !   12.1   0.0   0.00018     0.011     359     398 ..     634     673 ..     585     678 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.3e-06
   TIGR01194 361 dlriasGelvyivGenGcGkstliklll..GlyipqeGellldGeavsdesrddyrdlfsavfadyylfdd.......lv.qpdekkqasldqattylsrlel...edkvk..vedlnys......tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfe.ladrlikladGkv 547
                 +l+i +G    +vG nG Gkstl+k++    l  p   + l   + v ++    +  ++ a    + l+++       l   pdekk+a l +  + ls l+    e k +  + +l++       +t ++s G r r++l  a + e  +++lde +   d     ++ ++    l++  kt+lv+shd+ +++ + +++++l + k+
  MMETSP1174-20130828|9383_1 307 ELTIGHGRHYGLVGPNGKGKSTLLKMIAngSLKLPPRVDALYVEQEVMADETPAFEAVLMADKERWALLEEergllaeLKeSPDEKKDARLMKIYEQLSALGAdaaESKARriLFGLGFDaemqerATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA-VIWLDDY---LQKWKKTLLVVSHDQDFLNsVCQEILHLDEQKI 511
                 79999999999**************9974348888777777666666666666676666665555665543223111154359******************97222344433367899963333335899***************************99998653.3344444...667779********9998636677888877766 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00018
   TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGel 398
                  +++ i     + +vG+nG Gkstl+kll    +p +G +
  MMETSP1174-20130828|9383_1 634 ELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLI 673
                 5677777788899*****************9999999966 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.26        16    1254    1329 ..     257     330 ..     241     349 .. 0.73
   2 !   10.3   0.0   0.00028     0.017     752     846 ..     427     519 ..     415     565 .. 0.71
   3 !    7.6   0.0    0.0018      0.11     637     694 ..     615     672 ..     603     699 .. 0.84
   4 ?    3.1   0.0      0.04       2.5    1420    1480 ..     733     793 ..     720     808 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.26
   TIGR00957 1254 erlkeysetekeapwqieetappsswpksgrvefrnyslr.yredldlvlrdlnvtieggekvgivgrtgagksslt 1329
                  er++   e ++ a  q       s+w +s +v +  +++  y ++l +v  d ++ti  g + g+vg  g gks+l 
  MMETSP1174-20130828|9383_1  257 ERVQRSVEGQQFACSQTAIDEKDSTWQNSLDVVIPSFTISaYNKNL-FV--DAELTIGHGRHYGLVGPNGKGKSTLL 330 
                  5555555666666666666666778888888888888775244443.33..67788999999999999999999874 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00028
   TIGR00957 752 teigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllk..nktrilvthgisylpqv.dviivlsdgki.semgsyq 846
                 +e+ e+   ++sgg + r+slara++ +  +++ld+p   +d          vi     l+  +kt ++v+h   +l  v + i+ l + ki s  g+y+
  MMETSP1174-20130828|9383_1 427 AEMQERATrEFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNA-------VIWLDDYLQkwKKTLLVVSHDQDFLNSVcQEILHLDEQKIrSYKGNYD 519
                 56666654268**************************99888654.......333333333125777778888888877623455566666633455555 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0018
   TIGR00957 637 itvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegk 694
                 i v++  f +  + p  ++ l++ i   + ++vvg+ g gks+ll  l  e++  +g 
  MMETSP1174-20130828|9383_1 615 IEVNDVKFQYGPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGL 672
                 6677788888888888889999999999999999999999999998888888776665 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.04
   TIGR00957 1420 enlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrl 1480
                   +ls gq+  v ++   l + ++l lde t  +d+e+ + +  +i +      v+t   rl
  MMETSP1174-20130828|9383_1  733 RDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVVTHDARL 793 
                  57999***99999999999999**************9888888887766666666665555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.94        59     614     653 ..     294     333 ..     253     340 .. 0.80
   2 !   13.4   0.0   5.4e-05    0.0034     469     553 ..     418     497 ..     399     506 .. 0.82
   3 ?    3.5   0.0     0.055       3.4     625     651 ..     634     660 ..     630     669 .. 0.85
   4 ?    4.9   0.0     0.021       1.3     825     894 ..     731     794 ..     704     805 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.94
   TIGR00630 614 tlkgakennlkdidvsiplglltvitGvsgsGkstLindi 653
                 t++  ++n + d +++i  g+   + G+ g GkstL++ i
  MMETSP1174-20130828|9383_1 294 TISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMI 333
                 667777777889999999999999************9866 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 5.4e-05
   TIGR00630 469 kfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetir 553
                 ++L  +G+d    era++ +sGG + ri la  +  +    l +lDeP   L   D + +i     l++   tl+vv hD++ ++
  MMETSP1174-20130828|9383_1 418 RILFGLGFDAEMQERATREFSGGWRMRISLARALFIE--PTLMMLDEPTNHL---DLNAVIWLDDYLQKWKKTLLVVSHDQDFLN 497
                 5778888898999999999999999999999988655..5688899998665...667777777788888889999999999876 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.055
   TIGR00630 625 didvsiplglltvitGvsgsGkstLin 651
                 +++  i ++  +++ G  gsGkstL++
  MMETSP1174-20130828|9383_1 634 ELNFGIDMDSRICVVGNNGSGKSTLLK 660
                 567788899999************986 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.021
   TIGR00630 825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi 894
                 ++  LsGG   rv +++    r     l  lDePt  L ++ i  L e ++    +G  +vv+ h+  +i
  MMETSP1174-20130828|9383_1 731 AMRDLSGGQKARVVFCELCLLR---PQLLFLDEPTNNLDIESIDALCEAINAY--EG-GMVVVTHDARLI 794
                 5677999999999887655444...46889****************9999864..33.356666766665 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.9e-06   0.00018     137     170 ..     304     337 ..     301     340 .. 0.95
   2 ?    4.5   0.0      0.04       2.5     146     170 ..     642     666 ..     607     673 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.9e-06
   TIGR02546 137 iDglltvgeGqRiGifaeaGvGkstLlsmiarga 170
                 +D+ lt+g+G   G+ +  G GkstLl+mia+g+
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIANGS 337
                 899****************************986 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.04
   TIGR02546 146 GqRiGifaeaGvGkstLlsmiarga 170
                   Ri + ++ G+GkstLl+ + ++ 
  MMETSP1174-20130828|9383_1 642 DSRICVVGNNGSGKSTLLKLLTDEV 666
                 579***************9998875 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     5e-05    0.0031    2028    2109 ..     393     475 ..     296     506 .. 0.56
   2 !    6.0   0.0    0.0036      0.23     940    1114 ..     626     787 ..     568     798 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5e-05
   TIGR01257 2028 tgrehlylyarlrgvpaeeiekvanwsikslglsl.yadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrml 2109
                       + +y +l  + a+  e  a   +  lg+     +r +  +sgg + ++s a al   p l++ldept  +d +a   l
  MMETSP1174-20130828|9383_1  393 KDARLMKIYEQLSALGADAAESKARRILFGLGFDAeMQERATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDLNAVIWL 475 
                  44445566777777777777777777777777655134555566777777777777777777777777777777776664333 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0036
   TIGR01257  940 psgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglh.hkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtii 1114
                  p      d ln  +  +   +++g ng+gk+t l +lt  + pt g +              r  +g+  qh +   +l + e  + y +     ++         l   gl  h +    +dlsgg + ++  +   +   +++ ldept  +d  s  ++ + +  y  g  ++
  MMETSP1174-20130828|9383_1  626 PNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVKPTDGLIRRN----------PRMRIGVYNQHFV--EKLPMNETPVEYLRRL--FQDLDYQSARNRLGKFGLEgHAHTIAMRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDIESIDALCEAINAYEGGMVVV 787 
                  444445688888887777778899999999999999999999999965322..........3555677777744..5566666655553322..2232233344556666664355556667777777777666666666777777777777777777777777777777776655 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-06   0.00028     128     159 ..     304     335 ..     299     339 .. 0.94
   2 ?    0.3   0.0      0.89        55     137     158 ..     642     663 ..     634     669 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.5e-06
   TIGR03497 128 idglltvGkGqrvGifagsGvGkstllgmiar 159
                 +d+ lt+G+G++ G+    G Gkstll mia 
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 7999**************************97 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.89
   TIGR03497 137 GqrvGifagsGvGkstllgmia 158
                   r+ +    G Gkstll ++ 
  MMETSP1174-20130828|9383_1 642 DSRICVVGNNGSGKSTLLKLLT 663
                 57999999**********9876 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0057      0.36       3      49 ..     317     365 ..     316     384 .. 0.84
   2 !    9.2   0.0    0.0035      0.22       2      23 ..     645     666 ..     644     669 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0057
   TIGR00152   3 gltGgigsGKstvakilkdkykl...pvidADkiarqvvekgkpayekiv 49 
                 gl+G  g GKst++k++++   l   p +dA  + ++v++++ pa+e++ 
  MMETSP1174-20130828|9383_1 317 GLVGPNGKGKSTLLKMIANGS-LklpPRVDALYVEQEVMADETPAFEAVL 365
                 89***************9854.4112569999999999999999999885 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0035
   TIGR00152   2 igltGgigsGKstvakilkdky 23 
                 i ++G  gsGKst++k+l+d+ 
  MMETSP1174-20130828|9383_1 645 ICVVGNNGSGKSTLLKLLTDEV 666
                 789****************975 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.8e-05    0.0018     128     160 ..     304     336 ..     300     344 .. 0.93
   2 ?    0.4   0.0      0.75        47     139     160 ..     644     665 ..     637     670 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.8e-05
   TIGR03496 128 inalltvgkGqrlglfagsGvGKsvLlgmlara 160
                 ++a lt+g+G + gl+   G GKs+Ll m+a +
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIANG 336
                 7899**************************976 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.75
   TIGR03496 139 rlglfagsGvGKsvLlgmlara 160
                 r+ ++   G GKs+Ll  l+ +
  MMETSP1174-20130828|9383_1 644 RICVVGNNGSGKSTLLKLLTDE 665
                 899999**********999865 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.6       2.6   1.6e+02     310     352 ..     111     153 ..      83     166 .. 0.82
   2 ?    0.1   0.0      0.65        41      74      96 ..     311     333 ..     297     349 .. 0.65
   3 !   16.0   0.0     1e-05   0.00062     237     386 ..     531     667 ..     520     701 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.6
   TIGR03925 310 aaegekapkvrlLPerlelsalaekeaeerervllGleesdla 352
                 +a+++kapk+  L +++e+++l+++e++++e++  + +e+++a
  MMETSP1174-20130828|9383_1 111 NAKTKKAPKMSKLQKKMEAARLRQEEKKQKEELEKARDEARMA 153
                 6778999***************999999999888888887654 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.65
   TIGR03925  74 gaagnvaivGapqsGkstalrtl 96 
                 g++ +  +vG   +Gkst+l+ +
  MMETSP1174-20130828|9383_1 311 GHGRHYGLVGPNGKGKSTLLKMI 333
                 45556677777777777777643 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1e-05
   TIGR03925 237 lrdligtrieLrLgdpadSeidrraaakvpeekpGrglteeklhllialprldglasaedlaalealveaiaaaaegekapkvrlLPe.rlelsalaekeaeerervllGleesdlapvaldfaeephllvlGdsesGktallraiaeevv 386
                  +++   + e rL++ + S i +++a +  + k+Gr    +k++  +a+++ +++a      ++++l+++ ++ + + ++++v  LP   +e+++++  ++ +++ vl+  +e     + + ++ ++ + v+G+++sGk++ll+ + +ev 
  MMETSP1174-20130828|9383_1 531 QQQKAYDQQERRLKEMKRSGITKKKAVEDLKSKKGRESGGSKKKKNAAVASGQDTA------EIQELIKRPREYSVTLEFAEVAKLPPpLIEVNDVKF-QYGPNLPVLF--DE-----LNFGIDMDSRICVVGNNGSGKSTLLKLLTDEVK 667
                 55666677799************999888888*******************99999......578899999999999999999999752689999975.7777777776..44.....4566778899******************99985 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.2e-05    0.0026     154     186 ..     304     336 ..     300     349 .. 0.93
   2 ?   -1.5   0.0       2.7   1.7e+02     164     185 ..     643     664 ..     637     669 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.2e-05
   TIGR01026 154 idalltvgkGqrlGifaGsGvGkstLlGmiara 186
                 +da lt+g+G++ G+    G GkstLl mia  
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIANG 336
                 8999**************************975 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 2.7
   TIGR01026 164 qrlGifaGsGvGkstLlGmiar 185
                  r+ +    G GkstLl +++ 
  MMETSP1174-20130828|9383_1 643 SRICVVGNNGSGKSTLLKLLTD 664
                 588889999********99886 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0       0.2        12       7      24 ..     317     334 ..     313     357 .. 0.88
   2 !   10.3   0.0    0.0016     0.098       4      25 ..     643     664 ..     640     670 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.2
   TIGR00231   7 vivGhvdvGKstLlnsll 24 
                 ++vG  + GKstLl+ ++
  MMETSP1174-20130828|9383_1 317 GLVGPNGKGKSTLLKMIA 334
                 799***********9886 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0016
   TIGR00231   4 ikivivGhvdvGKstLlnsllk 25 
                  +i +vG  ++GKstLl+ l++
  MMETSP1174-20130828|9383_1 643 SRICVVGNNGSGKSTLLKLLTD 664
                 6899*************99876 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0027      0.17     131     162 ..     304     335 ..     217     340 .. 0.87
   2 ?   -1.6   0.3       2.7   1.7e+02     339     401 ..     530     596 ..     513     608 .. 0.74
   3 ?   -0.1   0.0      0.97        60     141     162 ..     643     664 ..     634     670 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0027
   TIGR03498 131 idlfltlcrGqRlGifaGsGvGkstllsmlar 162
                 +d+ lt++ G   G+    G Gkstll m+a+
  MMETSP1174-20130828|9383_1 304 VDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 688899************************97 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.7
   TIGR03498 339 Rlakkvlspeekklvkrlrallaryeetedlir.lGayrkGsdaevDeavkl...vpkieeflkqek 401
                 R  +k+ +++e++l +  r+ +++ + +edl    G    Gs+++ + av+    +++i+e++k  +
  MMETSP1174-20130828|9383_1 530 RQQQKAYDQQERRLKEMKRSGITKKKAVEDLKSkKGRESGGSKKKKNAAVASgqdTAEIQELIKRPR 596
                 778899999999999999*************851566777788888888864222566666666555 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.97
   TIGR03498 141 qRlGifaGsGvGkstllsmlar 162
                  R+ +    G Gkstll +l+ 
  MMETSP1174-20130828|9383_1 643 SRICVVGNNGSGKSTLLKLLTD 664
                 689999999*********9986 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   2.5         9   5.6e+02     350     387 ..     115     152 ..     106     167 .. 0.74
   2 ?    1.0   0.0      0.21        13     711     811 ..     236     335 ..     229     352 .. 0.59
   3 ?    4.1   0.0     0.023       1.4     206     242 ..     433     469 ..     410     489 .. 0.80
   4 ?    0.2   2.0      0.35        22     706     813 ..     539     666 ..     519     687 .. 0.52
   5 ?    8.9   0.0   0.00084     0.052     207     242 ..     732     767 ..     717     791 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 9
   TIGR00956 350 rnspeyaelekeideylerveeekekeaikesavakks 387
                 ++ p++ +l+k +++   r+ee+k+ke++++++ + + 
  MMETSP1174-20130828|9383_1 115 KKAPKMSKLQKKMEAARLRQEEKKQKEELEKARDEARM 152
                 67888999999999999999999999998877654443 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.21
   TIGR00956 711 kkakkkeeeseskkndieagevlkstdltdeseevneeveeekesg.eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                 k++kk  +++e+k  +i+++++  +  +  ++ +  ++  +ek+s+ ++  ++  +     i++ +++l  + +  +  G+   L+G  G Gk tLl ++a+
  MMETSP1174-20130828|9383_1 236 KEVKKLMKDRENKLREIAEEKERVQRSVEGQQFACSQTAIDEKDSTwQN--SLDVVIPSFTISAYNKNLFVDAELTIGHGRHYGLVGPNGKGKSTLLKMIAN 335
                 4444444445555555555544444444444444444444444432111..122233455666777777777777777778888888888888888877765 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.023
   TIGR00956 206 lvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                   R  sGG r R+s+a +l  +++++++D+ t  LD 
  MMETSP1174-20130828|9383_1 433 ATREFSGGWRMRISLARALFIEPTLMMLDEPTNHLDL 469
                 5677899999999999999999999999999888885 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.35
   TIGR00956 706 kkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesg......................eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                 ++++lk++k+++ ++++ ++d+++++  +s   +++++++  + ++ +e++                        + e+ d+ ++     +  vl de++  +   +   ++G+ G Gk tLl  L++ v
  MMETSP1174-20130828|9383_1 539 QERRLKEMKRSGITKKKAVEDLKSKKGRESGGSKKKKNAAVASGQDTAEIQelikrpreysvtlefaevaklpPPLIEVNDVKFQY--GPNLPVLFDELNFGIDMDSRICVVGNNGSGKSTLLKLLTDEV 666
                 55555666666666666666666555555554444444444444444442224444555555555544444443344444444432..333445555555444444445566677777777777766654 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00084
   TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                 +R +sGG++ Rv   e ++ +++++++D+ t  LD 
  MMETSP1174-20130828|9383_1 732 MRDLSGGQKARVVFCELCLLRPQLLFLDEPTNNLDI 767
                 588899999999999999999999999999999984 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.083       5.2       5      22 ..     317     334 ..     313     355 .. 0.84
   2 ?    7.1   0.0     0.014      0.88       4      26 ..     645     667 ..     643     676 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.083
   TIGR02322   5 lvvGpsGaGKDtlldlar 22 
                  +vGp G GK tll++ +
  MMETSP1174-20130828|9383_1 317 GLVGPNGKGKSTLLKMIA 334
                 68************9865 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.014
   TIGR02322   4 ilvvGpsGaGKDtlldlararla 26 
                 i+vvG  G+GK tll+l+ ++++
  MMETSP1174-20130828|9383_1 645 ICVVGNNGSGKSTLLKLLTDEVK 667
                 78**************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       577  (0.140663); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        98  (0.0238908); expected 4.1 (0.001)
Passed Fwd filter:                        74  (0.01804); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 2.66u 0.22s 00:00:02.88 Elapsed: 00:00:02.29
# Mc/sec: 486.64
//
Query:       MMETSP1174-20130828|9388_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 552.40
//
Query:       MMETSP1174-20130828|9386_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    7.4   3.3        0.7    5.5   1.1    2.6  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.017        71      57      96 ..      83     126 ..      75     143 .. 0.61
   2 ?    5.5   1.1   0.00017       0.7      52     151 ..     150     256 ..     147     276 .. 0.58

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.017
   TIGR02917  57 eaRflLgkiyle....qGdaaaAekeLrkAlslgyskeqvlplL 96 
                  a f Lg +y++    + d + A+  +rkA+++g + +q ++ +
  MMETSP1174-20130828|9386_1  83 QAMFNLGVMYSSgrgcEKDEVHAVEWYRKAAEQGHAGAQCNLGI 126
                 55666666665532223356667777777777777776666554 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00017
   TIGR02917  52 dpndaeaRflLgkiyleqG.....daaaAekeLrkAlslgyskeqvlplLaray...llqgkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqA 151
                 d+  a a f +g +y   G     d a A+  +rkA+++gy+++q+++ L  a    +++++   v  + ++++   d+ + +l ++ +++    ++  +A k +e+A
  MMETSP1174-20130828|9386_1 150 DQGCAQAQFNMGVMYED-GngvpkDEARAVEWYRKAAEQGYAQAQLNLGLMYANgrgVSTDEIRAVRWYKKAAKQGYDDAQYNLGVMYANGRGVAKDEPRAVKWFEKA 256
                 55566777777777754.311333567899999999999999999999887664222344444444444444444444555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 951.00
//
Query:       MMETSP1174-20130828|9390_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|9393_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|9392_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1174-20130828|9391_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.9   0.0       0.41    7.6   0.0    2.0  2  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0001      0.41     225     279 ..      24      80 ..       9      86 .. 0.83
   2 ?    2.2   0.0    0.0043        18      48      87 ..     137     176 ..     125     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0001
   TIGR01249 225 nhyfvnkgflesenalldnisk..ikniktvivqGrydlvcPlqsalalkkafPeae 279
                 +hy v    ++s++ + + i++    +   v+v G y +  P ++al ++ a+   +
  MMETSP1174-20130828|9391_1  24 SHYTVIAHRIDSNESIGECIKEqmALHDAQVLVSGCYGIAGPRTQALGVHAAWAATN 80 
                 799999999999999999886411457889***********************8765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0043
   TIGR01249  48 ffdpevyrivlldqrGaGkskphaileenttwdlvadiek 87 
                 ++    + iv+ d rG     +++ l +nt  +l + i+ 
  MMETSP1174-20130828|9391_1 137 YWHQLSVMIVITDSRGPRFNSAFKELRQNTLKHLTSIIDT 176
                 55666778**********999*********9999876553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 916.38
//
Query:       MMETSP1174-20130828|9395_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|9394_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   34.3   0.2    1.7e-09   33.9   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0074   13.6   0.3      0.036   11.4   0.1    2.0  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.047   10.1   0.2      0.078    9.3   0.1    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   1.2e-12   1.7e-09       6     158 ..     170     322 ..     166     323 .] 0.78

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.2e-12
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialC.....arLshPnivaLlDsGeaedgllFavFeyveGrtlre.vLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaa.dvesh...akvLDFGigaLlpgvedadeatltrttevlGsPaYaaP 158
                  a+k++R+ +   ++ + R   ei+l      ++L+h ni  +l   ++   ++   Fe+  G  l e  ++ d  L   +t ++++ + Dal + h++G  hRD+k +ni+v aa ++ +h    ++ +FGi   l +         t+ +e+ G+P + aP
  MMETSP1174-20130828|9394_1 170 LALKMMRKSNLLTTKAITRASSEITLLhgqdpDALHHRNILPILQVVHSSS-FMCYTFELF-GTSLYEfSVNEDIHLREFNTKEVITAMHDALKHVHSHGYAHRDVKGENILVRAAaGNGTHitdVRLTNFGIMCRLDD--------ETALGEMCGTPGFIAP 322
                 799******999999********99863333369**********9988888.88888**87.66666615677789*************************************76514444311134555666554433........4678999999999998 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   1.5e+02     138     189 ..      57     106 ..      18     109 .. 0.72
   2 !   11.4   0.1   2.6e-05     0.036      84     133 ..     244     293 ..     221     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.11
   TIGR03724 138 kskevedkavDlhvlkrslestheelaeelieaflegYkeeveeekavlekv 189
                 +s e+ + +     l ++l+++hee  e+  + +le Y +++++  av +++
  MMETSP1174-20130828|9394_1  57 FSTEIDEFGR--LALGNALNAIHEEDPERDGNTLLERYIKTRRKLVAVSRNL 106
                 5555555443..4677889999999999999999999998887766666655 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.6e-05
   TIGR03724  84 lkdlleekelellkevGelvgklHkagivhgDlttsNiivk...ddklyliDf 133
                 l++  ++   e+++++ +++ ++H++g +h D+  +Ni+v+   ++ + + D+
  MMETSP1174-20130828|9394_1 244 LREFNTK---EVITAMHDALKHVHSHGYAHRDVKGENILVRaaaGNGTHITDV 293
                 4444444...99****************************7444555566665 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   5.7e-05     0.078     267     310 ..     258     308 ..     224     313 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.7e-05
   TIGR01982 267 sflkqvlrdgfFHaDlHpGNilvakd.......gkiialDfGivgrlseee 310
                   lk+v  +g+ H D+   Nilv++          + +  fGi+ rl++e+
  MMETSP1174-20130828|9394_1 258 DALKHVHSHGYAHRDVKGENILVRAAagngthiTDVRLTNFGIMCRLDDET 308
                 46899*******************9999887776777889*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|9399_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|9397_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-21   71.9   0.0    1.3e-19   68.1   0.0    2.2  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    2.6e-12   43.7   0.6    7.7e-08   29.0   0.0    3.2  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
  ------ inclusion threshold ------
      0.025   12.1   0.0       0.15    9.6   0.0    2.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   9.6e-23   1.3e-19      49     262 ..     132     383 ..     127     465 .. 0.71

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 9.6e-23
   TIGR00475  49 dkvlgliDvPGHekflknalagvggi..daalLvvdade....G...vkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeile....e..............eeflknakivkvsAktGqGieeLkkel.......knLlesldakdkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepin....kkvrvkalqaqnqsvekavAGqRialnla.dvdkeklkRGllilkpee 262
                  k l+++D  GH k+lk+ ++g+ g   d ++L v+ +     G   +    +EHL ++  l+++ + vv+tK D + ++e++ + e l++ l+    +               ++     i+++s +tG G+  L++ l       + Ll  l   +  ++  + iD+ F v  +G+v+ Gt+++G v vgD++ l p      + v+++++q  ++s+++avAGq  ++++  +  + +   G l+  p++
  MMETSP1174-20130828|9397_1 132 TKLLTILDLAGHPKYLKTTVSGLVGHapDFVMLAVEMKAclrgGdsvLGIMSREHLGIALALNLR-VFVVVTKCDSATSDEIDLALESLHKTLRtmsgKstvlvrshgeieqvVSMVSVVPILVTSSVTGLGLALLRDFLfltpnkmASLLSPLPLVQPPSSSLVRIDESFDVDEVGLVLGGTIHHGAVSVGDSMLLGPHKdghyEMVKIRSIQVMRVSSKRAVAGQSATFAVRqQRPRSDSAPGRLQVSPQS 383
                 5789******************876434899***9876522212211235689***********9.99***********999976555544433111111111111111100034445567899*************86622221114555555555555666789*******************************98752222589*******************99999885555555666655555555 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   1.6e-05     0.022      86     296 ..     134     365 ..      43     390 .. 0.66
   2 !   29.0   0.0   5.6e-11   7.7e-08     296     365 ..     394     465 ..     390     476 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   TIGR00483  86 evtivdapghrdfiknmitgasqa..daavlvvavddgele......vqpqtrehvllartlgikqlivainkmdsvnydeekf..eelkkev....se...llkkvgyk...pdevefipv...saykgdnvvkksen..apwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepa..gvs..gevksiemhheqieqaepgdnigfnvrg 296
                  +ti+d  gh  ++k  ++g      d  +l v+++               +reh+ +a +l ++ + v + k ds   de +   e l+k++     +   l++  g     ++ v  +p+   s+ +g  ++   +       k  +ll  l  +++p+        + i++ +++  vg v  g +  g + +g+ +++ p   g     +++si++     ++a+ g+   f vr+
  MMETSP1174-20130828|9397_1 134 LLTILDLAGHPKYLKTTVSGLVGHapDFVMLAVEMKAC--LrggdsvLGIMSREHLGIALALNLRVF-VVVTKCDSATSDEIDLalESLHKTLrtmsGKstvLVRSHGEIeqvVSMVSVVPIlvtSSVTGLGLALLRDFlfLTPNKMASLLSPLPLVQPPSSSL-----VRIDESFDVDEVGLVLGGTIHHGAVSVGDSMLLGPHkdGHYemVKIRSIQVMRVSSKRAVAGQSATFAVRQ 365
                 58******************865412555555555443..223555455578**********99865.668999998887643211222222100011122244444432011222333332222555555444433321122344566777777777766543.....45788888888888888888889888888888888522433114556888888888888888888888875 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 5.6e-11
   TIGR00483 296 gvskkdirrgdvagdadn..ppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvellkkldprtg 365
                 g  k+++r+g v   ++    p +a ef+a+i++lq p ++tv y pv++ ht   + r+  +  + d++t 
  MMETSP1174-20130828|9397_1 394 GTKKRKMRKGMVLLSSNTttEPVAAYEFEAEILLLQNPHTMTVDYEPVVHIHTIAQSARIKHISSREDRQTT 465
                 56788999999865444333899******************************99999***99999999886 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.15     2e+02      18      40 ..      44      66 ..      32      70 .. 0.82
   2 ?    9.6   0.0   0.00011      0.15     123     172 ..     188     237 ..     179     250 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.15
   TIGR03598 18 lpeiafaGrSNvGKSsliNaLtn 40
                 + +a +G   +GKS+l  +Lt 
  MMETSP1174-20130828|9397_1 44 EVRMATVGDAHSGKSTLAAVLTT 66
                4567999*********9988875 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00011
   TIGR03598 123 ellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSs 172
                  ++ + +++v+vv+tK+D  ++ e++ al++++k+l++++ k +vl+ S 
  MMETSP1174-20130828|9397_1 188 GIALALNLRVFVVVTKCDSATSDEIDLALESLHKTLRTMSGKSTVLVRSH 237
                 566778999****************************9977766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1636.05
//
Query:       MMETSP1174-20130828|9400_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   16.8   0.0    0.00077   16.2   0.0    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
     0.0019   14.6   0.0     0.0032   13.9   0.0    1.3  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.7e-07   0.00077     104     202 ..     249     350 ..     246     383 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.7e-07
   TIGR00877 104 sKafakdllkkagiptaeyevftepeeakeyieekgap..aivvkadgLaaGKgvivvkdeeealkaveei...lekkkfgeagekvviEefleGeEvsllalv 202
                 +K  + + ++ agi+  + +  te ++++e+++  + +   +vvk+   a+   v  + ++ee   a e+i   ++   +g  +e v++ efl+G+E  +  + 
  MMETSP1174-20130828|9400_1 249 NKYLMGETVRSAGIRAVQQKRATEWADIEEFLTTWNPNpfIVVVKPIQSAGSDDVFKCVTVEEVRVAFEKIngaING--LGVVNEGVLVQEFLDGTEYVIDSVS 350
                 566777888999**********************9988667889999999999999887777765555555110555..8999**************9776654 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.6e-06    0.0032     295     382 ..     247     344 ..     232     356 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.6e-06
   TIGR03103 295 cddkrltrrlvkeaGlqvPeqaeatkaeaveaflaehG....avvvkPvrgeqG....kGisvd.vra.lddleaaiakarqvsdrvllerlveGedl 382
                   +k l   +v++aG++  +q+ at+ +++e+fl +       vvvkP+++       k ++v+ vr   ++++ ai     v++ vl++++  G + 
  MMETSP1174-20130828|9400_1 247 RRNKYLMGETVRSAGIRAVQQKRATEWADIEEFLTTWNpnpfIVVVKPIQSAGSddvfKCVTVEeVRVaFEKINGAINGLGVVNEGVLVQEFLDGTEY 344
                 46899999**************************9875333369*****98654222266777524435799*******************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.46
# Mc/sec: 1606.82
//
Query:       MMETSP1174-20130828|9402_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 583.95
//
Query:       MMETSP1174-20130828|9405_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 364.91
//
Query:       MMETSP1174-20130828|9403_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 754.22
//
Query:       MMETSP1174-20130828|9407_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|9409_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 136.54
//
Query:       MMETSP1174-20130828|9418_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|9416_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   14.4   5.2     0.0018   14.2   3.6    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.011   12.9   0.0      0.014   12.6   0.0    1.1  1  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
      0.038   11.3   0.1      0.049   11.0   0.1    1.1  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   3.6   1.3e-06    0.0018     591     626 ..      40      75 ..       1      77 [. 0.70

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-06
   TIGR00870 591 glllfgaYvviavilLLNmLIAmmgntyqeiaeead 626
                 ++l +  + ++ v lLLN L A++ ++y++++ee +
  MMETSP1174-20130828|9416_1  40 VYLFYFGFFFVIVMLLLNVLLAIIIDSYNSVYEETK 75 
                 455666667777899*****************9987 PP

>> TIGR03149  cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.9e-06     0.014      19      82 ..      61     125 ..      48     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.9e-06
   TIGR03149  19 gvalksvvtlakekke.kakrygmvhdetacigctactdacrevnkvpegvsrleiirsepkgef 82 
                 ++ + s  ++++e+k+ k+  y +  d  +c+g t    +c   +k p+    l+   sep+g  
  MMETSP1174-20130828|9416_1  61 AIIIDSYNSVYEETKNfKTNDYNVFSDMWLCVGLTFDFVTCASAEKPPDEDLYLKNKGSEPQGVL 125
                 4445555556666665599*******************************************965 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.6e-05     0.049     157     211 ..      38      94 ..      26     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
   TIGR02752 157 llgfkqlyflyfkyimpllgkllaksykeyswlqesarefpgkd..elaelfkeagl 211
                 ++++   + ++f  +m ll  lla   + y  + e +++f  +d   + +++  +gl
  MMETSP1174-20130828|9416_1  38 IPVYLFYFGFFFVIVMLLLNVLLAIIIDSYNSVYEETKNFKTNDynVFSDMWLCVGL 94 
                 56777777789999**************************98762146677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 552.70
//
Query:       MMETSP1174-20130828|9421_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 578.02
//
Query:       MMETSP1174-20130828|9426_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.52
# Mc/sec: 233.52
//
Query:       MMETSP1174-20130828|9425_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 455.13
//
Query:       MMETSP1174-20130828|9420_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   10.3  56.5        0.1    9.6  39.2    1.4  1  TIGR02794 tolA_full: protein TolA
       0.24    7.2  34.9        0.3    6.9  24.2    1.1  1  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
       0.35    7.6  17.0       0.33    7.7  11.8    1.1  1  TIGR03607 TIGR03607: patatin-related protein
       0.73    6.8  21.7        1.1    6.2  15.0    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
        1.8    3.9  11.9        1.9    3.8   8.3    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        2.8    3.3  40.3        3.3    3.0  27.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        4.2    2.7  50.3        5.7    2.3  34.9    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        6.9    2.7   7.9        8.1    2.5   5.5    1.1  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
        7.4    2.6  15.2        9.7    2.2  10.5    1.1  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter
        7.8    1.9  18.5        9.9    1.5  12.8    1.2  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  39.2   0.00025       0.1      43     151 ..      92     198 ..      64     222 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
   TIGR02794  43 DpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaea.Ka.......ek 151
                 ++a  aqqa+++qqq+++++        p+q++q++++qq+++++++q + q++ +++++ + +a++  k+ + ++ +++  ++q  + +++q+ E++ + ++++ +        e+
  MMETSP1174-20130828|9420_1  92 QQAHQAQQAQQQQQQQQQPQ--------PQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQ--KQIQHQQLQQRHLQQQLQQLQQQQQIEQQLQHQQQQpQTafnglkiEQ 198
                 22222333333333332222........224444444444444444555445555555466667777..444555555566666776777788888866655544222454333333 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  24.2   0.00073       0.3     175     310 ..      85     220 ..      51     228 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00073
   TIGR00609 175 tkkspeavlkqiladllkqsalafespplkleklqkqaeqiikkldklkkqlaaefraalkelealikklkrekfskenllkwlekllewaesele.seklpkklkkfsqkelekkakkkttpkhavfeeidklake 310
                 + +  +++++++ ++ ++q +++ ++p+ +++++q++++q+++++++ ++q++++ +++ ++++a +k+++ ++ ++  l ++l++l + ++ e + + ++++    f+  ++e+++++++    + f+ + k+ k 
  MMETSP1174-20130828|9420_1  85 IFHTLQHQQAHQAQQAQQQ-QQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQQQIEQQlQHQQQQPQTAFNGLKIEQQLQHQQQQPQTPFNTSLKIEKA 220
                 3344455555555555544.344444444555555544554555555555557777888889999999999999999999999999999888775514455566778999999999999888888888887777665 PP

>> TIGR03607  TIGR03607: patatin-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.8   0.00079      0.33     372     473 ..      93     191 ..      13     227 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00079
   TIGR03607 372 lvealeaatlleslaeelldayrkkaleqaaervgaayaayvrlklkevadelaeliaealevdadsdearavsaaleawarer.....lpaesaepekaaagapaf 473
                 +++++++a+  ++ ++++  + ++++++q++++ ++++++ ++++ +   ++  ++ a+  + ++++ ++r ++++l+++++++     l      +++ + ++ af
  MMETSP1174-20130828|9420_1  93 QAHQAQQAQ--QQQQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQQqieqqL------QHQQQQPQTAF 191
                 223333222..5556666666666666666666666666777777777777777777777777777778888888888887775433222......22222223333 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  15.0    0.0028       1.1      77     163 ..     104     190 ..      69     217 .. 0.42

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0028
   TIGR01347  77 ssaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaaka 163
                 ++++++ +++++++++e+++++++++++++++++++ ++  +  a++++i+++++++ + ++++++ +++++ e++ + +++++++a
  MMETSP1174-20130828|9420_1 104 QQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQQQIEQQLQHQQQQPQTA 190
                 111222222222222222222222222222222233333333334444555555555444444444333333333322222222222 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   8.3    0.0045       1.9     752     857 ..      97     199 ..      32     228 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0045
   TIGR00927 752 eakgertgeeaeae.teaegekdees..ggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekede 857
                  +++++++++++++  + + +++e++  +++++q+ +++++ +++++ +i+a++k+ +++  + ++++     +++ ++++++++ e++ ++++++ ++  +G + e++
  MMETSP1174-20130828|9420_1  97 AQQAQQQQQQQQQPqPQQQQQQQEQQqqQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQ--QLQQRH----LQQQLQQLQQQQQIEQQLQHQQQQPQTAFNGLKIEQQ 199
                 111111111111110111111111110011111222222222222333333332222221..111111....1222334444444444444444444444444444443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  27.9     0.008       3.3     810     948 ..      92     229 ..      83     234 .] 0.73

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.008
   TIGR02169 810 riearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeeeep 948
                 ++ +++++++++ +++++ + + +++ qe+q+++++ ++q++++++++++++ ++++ ++++++++ + r L+++l++L+++ +++e++l++++++ +++   ++  +++l++++++ ++  +   ++e++   + +e p
  MMETSP1174-20130828|9420_1  92 QQAHQAQQAQQQQQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQ-QQIEQQLQHQQQQPQTAFNGLKI-EQQLQHQQQQPQTPFNTSLKIEKAEsGSTSEVP 229
                 4455666777777777777777788888888888888888889999999999999999999999999999999999999876.56888888888877777666665.566666677777777777777776544444444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  34.9     0.014       5.7     342     506 ..      93     207 ..      78     228 .. 0.31

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.014
   TIGR02168 342 leeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenlegl 506
                 ++ + ++++++ +++++   +++++++e+++++++++++++++++  ++ ++q+++++++++ ++ +  +l++++++l+q++                                                  ++eq+lq+ +++ +++ + l++ ++lq ++++ 
  MMETSP1174-20130828|9420_1  93 QAHQAQQAQQQQQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQQ--------------------------------------------------QIEQQLQHQQQQPQTAFNGLKIEQQLQHQQQQP 207
                 1222222222222222222222222222222222222222222222222222222222222222222222222222222222..................................................122222222222222222222222222222222 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   5.5      0.02       8.1     230     311 ..      82     161 ..      49     194 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.02
   TIGR02696 230 akpfikvlcraqadlaekaaketeefplfldyeddvyeaveeavkdelekv.ltiadkqereeaedelkekvkeklaeeleer 311
                  kp+ ++l + qa+ a++a +++++ +  ++ +++  +  +++ +++ ++  ++ +++q+++++ ++ +++++++   +l++r
  MMETSP1174-20130828|9420_1  82 CKPIFHTLQHQQAHQAQQAQQQQQQQQQPQPQQQQQQQEQQQQQQQQQQQHqQQQQHQQQQNHQIQAQQKQIQHQ---QLQQR 161
                 577777777777777777777766666555555444443333333333222022223333333333333333322...22211 PP

>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  10.5     0.024       9.7     369     495 ..      95     203 ..      73     230 .. 0.42

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.024
   TIGR00926 369 aeeaslkvlnlaesdvkvevlsdsrkvalvedllskeekesksgieskesskkpngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnke 495
                 ++ ++ +  ++++++ + + + +++++++ ++++++++++++++ +++++  + ++++  +++l++++l+++ ++l++++++e++ +++    q +                   +++++ ++l+++
  MMETSP1174-20130828|9420_1  95 HQAQQAQQQQQQQQQPQPQQQQQQQEQQQQQQQQQQQHQQQQQHQQQQNHQIQAQQKQIQHQQLQQRHLQQQLQQLQQQQQIEQQLQHQQQQPQTA------------------FNGLKIEQQLQHQ 203
                 222222222222222222222222222222222222222222222222222222333334445556666666666666666665555444443333..................3333333333333 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  12.8     0.024       9.9    1008    1085 ..     104     192 ..      81     217 .. 0.51

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.024
   TIGR02102 1008 easektapkkeeeseadkekked.kdeskdkdkvaeaenkesktpagskken...........eeveksskekkeekldkeaklpktaek 1085
                  + +++ +++++++++++++++++ +++++++++++++++++ +++ +++  +           + ++  +++++e++l+++++ p+ta +
  MMETSP1174-20130828|9420_1  104 QQQQQQPQPQQQQQQQEQQQQQQqQQQQHQQQQQHQQQQNHQIQAQQKQI-QhqqlqqrhlqqQLQQLQQQQQIEQQLQHQQQQPQTAFN 192 
                  22222222222222222222222022222222222222222222222222.134555666653334445556667777777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1436  (0.350073); expected 82.0 (0.02)
Passed bias filter:                      356  (0.0867869); expected 82.0 (0.02)
Passed Vit filter:                       170  (0.0414432); expected 4.1 (0.001)
Passed Fwd filter:                        76  (0.0185275); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.39u 0.26s 00:00:01.65 Elapsed: 00:00:01.08
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|9427_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 228.23
//
Query:       MMETSP1174-20130828|9423_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1913.84
//
Query:       MMETSP1174-20130828|9431_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.1   0.4     0.0034   14.5   0.0    1.8  2  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
        2.1    6.5   7.2        1.1    7.4   0.1    2.1  2  TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-06    0.0034     252     296 ..      17      63 ..       6      79 .. 0.85
   2 ?   -0.5   0.1     0.061   1.3e+02     219     230 ..     127     138 ..      94     163 .. 0.43

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.7e-06
   TIGR00599 252 elmskereRLPkln..ysllkdsklrkkLselGlstnGsrqllqkRh 296
                     k+  R P l+  y+ lk  +lr+k +++G+ ++G+r+ l  R 
  MMETSP1174-20130828|9431_1  17 TTKQKDYTRDPHLAaeYAALKVPQLRSKAKDVGIDSTGNRAALTARL 63 
                 5678999999998555***************************9885 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.061
   TIGR00599 219 eskdssksssrl 230
                 e++d++k+   +
  MMETSP1174-20130828|9431_1 127 EKEDTKKPKVTT 138
                 222222222222 PP

>> TIGR03931  T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00054       1.1      98     152 ..      38      94 ..      17      96 .. 0.79
   2 ?    2.4   1.8     0.018        38      17      60 ..      97     146 ..      93     168 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00054
   TIGR03931  98 ihvaedplkgaeldavaael...eaaiaadptfvdleeadvvagrpvvtYretpgDgs 152
                 + +  +  k++++d++ +++    + ++ ++t v+l++++++a+    tY e+pgDgs
  MMETSP1174-20130828|9431_1  38 VPQLRSKAKDVGIDSTGNRAaltARLLDHADT-VELQKNRDRADSYLDTYGEDPGDGS 94 
                 55555666666666666665445566788888.***********************98 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.018
   TIGR03931  17 alvvvgegaatgdtgkakeresetaeasaeseepapptpktge......t 60 
                 ++++ + +a+ ++ + a +++ e ae sa+++e ++++++t+e       
  MMETSP1174-20130828|9431_1  97 SIAASDLAASDQTVTSAPVAADEVAESSAAEKEDTKKPKVTTElrklldS 146
                 55666656666777778888888888888888888888888776655550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 513.92
//
Query:       MMETSP1174-20130828|9432_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 678.15
//
Query:       MMETSP1174-20130828|9433_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1278.21
//
Query:       MMETSP1174-20130828|9437_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 609.66
//
Query:       MMETSP1174-20130828|9440_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|9441_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.56
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|9438_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-80  266.6   0.0      5e-80  266.2   0.0    1.0  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    3.9e-20   69.9   0.0    4.4e-13   46.9   0.1    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    6.5e-13   46.4   0.0    1.1e-08   32.5   0.0    2.1  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00051   17.8   0.0    0.00079   17.1   0.0    1.2  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.2   0.0   4.9e-83     5e-80       2     217 ..      22     239 ..      21     249 .. 0.97

  Alignments for each domain:
  == domain 1    score: 266.2 bits;  conditional E-value: 4.9e-83
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekdersp..kkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyelde 217
                  +v+vrhGes +n+e +f+GW dv+l+e+G +ea  +g  +k ++++fd a+ts+lkra++tl+++l+ +d++++p++ +WrlnerhyGal Gl k+++++++G e ++++rrsfdv+P +++  ++ ++    d ry +++   lP +esl   +erv+Pyw+d+i p++k+g+rv+++ah n +r+l++h++++s +++  l+iPt++Plvy ld 
  MMETSP1174-20130828|9438_1  22 TVVFVRHGESAFNAEKRFSGWLDVDLTERGCQEAYLSGLRVKSAGFQFDEAHTSMLKRAVRTLWTILHVSDHHYIPIHNTWRLNERHYGALSGLSKEAAKHRFGPEMLQLYRRSFDVEPINMEVTHPLYDaiYGDGRYDHVSPALLPYGESLGMCLERVVPYWRDNILPSVKKGRRVIVAAHNNVIRSLIHHIDGVSLKDLEGLEIPTALPLVYRLDP 239
                 58*****************************************************************************************************************************9985568**********************************************************************************95 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   4.3e-16   4.4e-13       1     115 [.      23     144 ..      23     153 .. 0.85
   2 !   21.1   0.0   3.5e-08   3.5e-05     106     167 ..     162     226 ..     149     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 4.3e-16
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaa..lrekledvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvpgGE 115
                 ++++RHge + n++k++ G +Dv L+e+g ++a    lr k +  +fd+ ++S l+R+ ++  ++    +++ +pi+   rL+E ++G+  g s +  ++++  e+ + +++  ++++ + E
  MMETSP1174-20130828|9438_1  23 VVFVRHGESAFNAEKRFsGWLDVDLTERGCQEAYLsgLRVKSAGFQFDEAHTSMLKRAVRTLWTILhvsDHHYIPIHNTWRLNERHYGALSGLSKEAAKHRFGpEMLQLYRRSFDVEPINME 144
                 689****************************99762267777999************9988766553447888899***********************99999988888888887777766 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 3.5e-08
   TIGR03162 106 laharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsie 167
                 +  a +p GEs+ +  +Rv   + + +     ++++v++ +H  vir l+ h+ g++l++l  +e
  MMETSP1174-20130828|9438_1 162 VSPALLPYGESLGMCLERVVPYWRDNILPsvkKGRRVIVAAHNNVIRSLIHHIDGVSLKDLEGLE 226
                 55677899*************9987554448788999999****************999876555 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.1e-11   1.1e-08       1      90 [.      22     115 ..      22     130 .. 0.86
   2 !   12.0   0.0   2.2e-05     0.023     106     176 ..     160     227 ..     136     241 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.1e-11
   TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGr 90 
                 tv++vrhg s+ n++k+++G+++ v+L+erG + a     r+  a+ + ++  +s l+r+ +t+ +i++      ++++   rl+e +YG  +G 
  MMETSP1174-20130828|9438_1  22 TVVFVRHGESAFNAEKRFSGWLD-VDLTERGCQEAYLSGLRVksAGFQFDEAHTSMLKRAVRTLWTILHVSdhhYIPIHNTWRLNERHYGALSGL 115
                 89********************7.***********888877722578999************99988876643377788889********99885 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.2e-05
   TIGR03848 106 ahpsaavfPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlDlfqriev 176
                  h s a  P Ge+l+    r+v     ++ ++  + +++   ++ +h +vi+s++ +  G+ l   + +e+
  MMETSP1174-20130828|9438_1 160 DHVSPALLPYGESLGMCLERVVP---YWRDNILPSVKKGRRVIVAAHNNVIRSLIHHIDGVSLKDLEGLEI 227
                 68999**************9976...5666777888888999999***********999999988777766 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.7e-07   0.00079       5      64 ..      25      88 ..      22     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.7e-07
   TIGR00249  5 lmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeiva 64
                 +rHGe + +a+       + +Lt++G++ea + + ++k ag ++d   +S l RA +t+  + 
  MMETSP1174-20130828|9438_1 25 FVRHGESAFNAEkrfsGWLDVDLTERGCQEAYLSGLRVKSAGFQFDEAHTSMLKRAVRTLWTIL 88
                6899998888765553445789***********************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 867.36
//
Query:       MMETSP1174-20130828|9442_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 806.08
//
Query:       MMETSP1174-20130828|9445_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|9450_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|9447_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1559.31
//
Query:       MMETSP1174-20130828|9448_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00099   17.0   0.0      0.053   11.6   0.0    2.8  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   1.3e-05     0.053       3      34 ..     115     147 ..     114     148 .. 0.91
   2 ?    2.3   0.0     0.012        48       7      30 ..     205     228 ..     205     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
   TIGR00756   3 yntlisglckagrveeAlelfdeMker.givPd 34 
                 y +l+s ++++g+ e A+e++  M++  gi P+
  MMETSP1174-20130828|9448_1 115 YQVLLSICAESGDHEYAVEILSGMESFdGIAPT 147
                 889*********************888788886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.012
   TIGR00756   7 isglckagrveeAlelfdeMkerg 30 
                 +s+++ agr ++A ++++ M+e+ 
  MMETSP1174-20130828|9448_1 205 LSAMAAAGRSDDATKILRWMEEDS 228
                 689999**********99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1190.97
//
Query:       MMETSP1174-20130828|9452_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1175.68
//
Query:       MMETSP1174-20130828|9449_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-22   77.4   0.0    3.1e-22   77.1   0.0    1.1  1  TIGR01198 pgl: 6-phosphogluconolactonase
  ------ inclusion threshold ------
      0.037   11.2   0.0       0.84    6.7   0.0    2.3  2  TIGR00502 nagB: glucosamine-6-phosphate deaminase


Domain annotation for each model (and alignments):
>> TIGR01198  pgl: 6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   1.5e-25   3.1e-22       5     234 .]      49     284 ..      45     284 .. 0.78

  Alignments for each domain:
  == domain 1    score: 77.1 bits;  conditional E-value: 1.5e-25
   TIGR01198   5 saelaealaervatklekalaekgqallalsGGrspialleaLaaq.kldW.srihlflgDERivplddadsnt.kllrealLdrvaipasnihlvptelsedveeaaekyeqelaaakqpe......evpsfDlllLGmGpDgHtaSLFPetpalqeteklvvvltkspkppheRitltlpvlnaakkvlllvaGee......Kaavlaeilkveaeels.lpaalvlgsekllwlldeaaaekl 234
                 ++ + +++   v ++++ka+ e+g ++la+ GG+  ++l+ +   +   dW +++++ ++   +v+++d +  t  ++r+ +Ld+ + ++  +   +  +  + e++a++ye ++++++ +        +p fDl+l+G+G+DgH+ SL+P + ++   ++   vl  + k p+  it++lp+++++k+v++++ G +      K a + ++++ ++e l+  pa++ +  +  +w++deaaa+kl
  MMETSP1174-20130828|9449_1  49 ADAVGNKVRGVVYEAAKKAIGERGYFSLAIPGGSILNMLIGD---DiLGDWtEKTTIAYVNHKCVDMNDGNLAThAKARKLFLDSWKGANTLVL--DGTD--QGEAEAASYEAKMKELTLEVlprdasGLPIFDLALIGVGDDGHIGSLYPGRNEVLVGSDGPWVLPVAMKDPP-SITFSLPIMANSKQVIIAACGVSdkypqgKSAGMRRAVAADDETLQtFPAVGLRSVA--TWVMDEAAASKL 284
                 555666777789999*******************99998754...2244784589*************99866515677888887766554443..3333..3588999999999998876655566779*******************************7777777777755.4********************643333449999999999777766515777777666..9******99886 PP

>> TIGR00502  nagB: glucosamine-6-phosphate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00041      0.84     112     150 ..     143     193 ..     128     196 .. 0.59
   2 ?    1.5   0.0     0.016        33     188     248 ..     219     285 ..     212     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00041
   TIGR00502 112 ddleaecrryeekikslG.........k...idlfllGiGadGhiafnePg 150
                 d+ eae   ye k+k+l          +    dl l G+G dGhi+   Pg
  MMETSP1174-20130828|9449_1 143 DQGEAEAASYEAKMKELTlevlprdasGlpiFDLALIGVGDDGHIGSLYPG 193
                 555666666666665432111111111212147889*********977776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.016
   TIGR00502 188 vGiktildskevlllvsG......kekaeavkklvegsvnedvtisalqlhkkvivvadeeaaqelk 248
                   +  + +sk+v++ + G      + k+  ++++v    +++ t  a+ l + ++ v+de+aa++l 
  MMETSP1174-20130828|9449_1 219 FSLPIMANSKQVIIAACGvsdkypQGKSAGMRRAVAADDETLQTFPAVGLRSVATWVMDEAAASKLG 285
                 555556679999999888433333348889999999999999999999999***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1038.08
//
Query:       MMETSP1174-20130828|9451_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.65
# Mc/sec: 672.13
//
Query:       MMETSP1174-20130828|9455_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 184.09
//
Query:       MMETSP1174-20130828|9453_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 690.64
//
Query:       MMETSP1174-20130828|9457_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 714.29
//
Query:       MMETSP1174-20130828|9458_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.81
# Mc/sec: 423.67
//
Query:       MMETSP1174-20130828|9462_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-11   39.2   0.5     0.0001   19.3   0.1    2.0  2  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.5e-08    0.0001     412     459 ..      33      80 ..      12      85 .. 0.85
   2 !   18.3   0.0   5.3e-08   0.00022     410     458 ..     109     157 ..      92     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.5e-08
   TIGR00435 412 gsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                 +s    ++e+++li+er++ rk++++k +D+++ el  +g+ L+D+ +
  MMETSP1174-20130828|9462_1  33 KSCTIAEKEIRRLIAERNTSRKARDWKTSDRLKSELRVQGVELNDRDE 80 
                 444456789************************************965 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 5.3e-08
   TIGR00435 410 qagsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtp 458
                  + +   ++ge+ +l+ +r+ ark ++++ aDki+ +l+ kgi + D++
  MMETSP1174-20130828|9462_1 109 MNTAMPLSDGEITALLLQREGARKIQDWDTADKIKADLQAKGIEVWDKE 157
                 3444445899**********************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|9463_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-21   72.1   0.0    7.6e-21   72.1   0.0    1.0  1  TIGR01068 thioredoxin: thioredoxin
    3.9e-14   50.7   0.0    4.4e-14   50.5   0.0    1.0  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.7e-12   45.5   0.0    1.9e-12   45.3   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.021   12.4   0.1      0.023   12.2   0.1    1.1  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   7.4e-24   7.6e-21      22      97 ..       2      77 ..       1      81 [] 0.95

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 7.4e-24
   TIGR01068 22 wAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97
                +A+ CgpCkm+ P l+++a+  +++v+v+K++ d+ ++++++  +++ Pt+++fk+gkev+rv Ga++  +l  + 
  MMETSP1174-20130828|9463_1  2 FATCCGPCKMMEPELQQAAQGFQSSVRVAKVDSDAYPALTSSLRVAAFPTVIFFKDGKEVHRVEGALTAPQLVAAA 77
                89****************************************************************9998887665 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   4.3e-17   4.4e-14      22      99 ..       2      75 ..       1      79 [. 0.91

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 4.3e-17
   TIGR01126 22 yaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelve 99
                +a  CG Ck ++Pe +++a+ +++   +v +akvd++a  +l+s++ v +fPt+ ffk+gk+   + eG+ +a +lv+
  MMETSP1174-20130828|9463_1  2 FATCCGPCKMMEPELQQAAQGFQS---SVRVAKVDSDAYPALTSSLRVAAFPTVIFFKDGKE-VHRVEGALTAPQLVA 75
                7899******************96...69*******************************96.889999888877765 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.8e-15   1.9e-12      26     101 ..       2      74 ..       1      77 [. 0.93

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.8e-15
   TIGR01130  26 YAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegiv 101
                 +A  CG Ck ++Pe ++AA+  ++   +v +akvD+ +   l++  +v  +Pt+ +f++g++++  +G+ +a ++v
  MMETSP1174-20130828|9463_1   2 FATCCGPCKMMEPELQQAAQGFQS---SVRVAKVDSDAYPALTSSLRVAAFPTVIFFKDGKEVHRVEGALTAPQLV 74 
                 7889****************9875...58*********************************99999999998887 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.2e-05     0.023      59     117 ..       3      61 ..       1      68 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
   TIGR02738  59 qstCpyChqfapvLkqlsqqtglevlayslDgkglaeFpdalpvtpevmqtfFengkpv 117
                    C  C+  +p L+q +q ++ +v +  +D    ++   +l v    +  fF+ gk+v
  MMETSP1174-20130828|9463_1   3 ATCCGPCKMMEPELQQAAQGFQSSVRVAKVDSDAYPALTSSLRVAAFPTVIFFKDGKEV 61 
                 567999******************************99999999988888899888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.97
# Mc/sec: 110.22
//
Query:       MMETSP1174-20130828|9464_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1174-20130828|9466_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|9468_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.53
# Mc/sec: 164.36
//
Query:       MMETSP1174-20130828|9471_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1174-20130828|9470_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1357.12
//
Query:       MMETSP1174-20130828|9475_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 371.41
//
Query:       MMETSP1174-20130828|9477_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 404.48
//
Query:       MMETSP1174-20130828|9478_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 381.70
//
Query:       MMETSP1174-20130828|9480_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|9482_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.69
# Mc/sec: 116.69
//
Query:       MMETSP1174-20130828|9481_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:01.10
# Mc/sec: 205.18
//
Query:       MMETSP1174-20130828|9483_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 295.54
//
Query:       MMETSP1174-20130828|9488_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   33.3   0.0    3.3e-09   32.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.9e-06   24.0   0.0    7.6e-06   23.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.6e-12   3.3e-09      85     240 ..       5     167 ..       2     176 .. 0.66

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.6e-12
   TIGR03903  85 mlqvLDalaaahdaGvvhRDLkPqnimvsaadvesha.kvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL..........Rgepvt....aksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaia..ghpLgevLRkalnkdvrqRaasaeal 240
                 +l+v  a+   hd+ + hRDLkP n+m + ad++ ++  v+DFG++     ++   e    r    +G+P++++Pe            R e          D+++ G+++   L G +   G  + e+l +q  P  v+  sa +  +    +v+ k l  d+++R  sa+++
  MMETSP1174-20130828|9488_1   5 LLKVTGAVRSMHDNHIAHRDLKPANLMFAEADKRLESvVVIDFGVARS---FRR-GE----RLYTRVGTPEFSSPEIFdqerrakgidRRENASlgydCSCDIWSLGVVMYMLLFGTQPFSGP-MDEILRQQCDPGRVARISAADhiSAEAKDVMLKMLAFDPKNRP-SAQEV 167
                 678999999***********************997651689***9753...333.22....233358********966222211111222222112224568888888888888888888774.6888888888887775544331133445677777777777774.45555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.7e-09   7.6e-06      98     138 ..       7      52 ..       3      61 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.7e-09
   TIGR03724  98 evGelvgklHkagivhgDlttsNiivk.....ddklyliDfGLgkk 138
                 +v  +v  +H++ i+h Dl ++N+++       +++++iDfG ++ 
  MMETSP1174-20130828|9488_1   7 KVTGAVRSMHDNHIAHRDLKPANLMFAeadkrLESVVVIDFGVARS 52 
                 56778999******************6443334679*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|9484_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1169.05
//
Query:       MMETSP1174-20130828|9479_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 684.69
//
Query:       MMETSP1174-20130828|9486_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|9490_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1021.18
//
Query:       MMETSP1174-20130828|9495_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1400.03
//
Query:       MMETSP1174-20130828|9497_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 291.60
//
Query:       MMETSP1174-20130828|9502_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1174-20130828|9505_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1174-20130828|9499_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1033.91
//
Query:       MMETSP1174-20130828|9501_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-24   82.3   0.0    1.2e-18   64.9   0.0    2.4  2  TIGR03253 oxalate_frc: formyl-CoA transferase


Domain annotation for each model (and alignments):
>> TIGR03253  oxalate_frc: formyl-CoA transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   2.9e-22   1.2e-18      55     199 ..       6     150 ..       2     162 .. 0.94
   2 !   14.7   0.0   4.8e-07     0.002       3     200 ..     328     518 ..     326     522 .. 0.74

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 2.9e-22
   TIGR03253  55 dslyftmlnankrsitldikapeGkevleelikkadvlvenfkPGaldrmGftwekiqelnPrlilasikGfdegsayenvkayenvaqaaGGaasttGfedGvPlvsaaalGdsntGlhlvigilaallqrektGrGqrvavam 199
                  s  f +ln  k s++ld+k++e ke l +l+  adv++ n++  +l r+G  ++ ++e  P+l++a +  ++   + + +  y++ a  a   +++     G   +  +a+Gd  +G  l++g+ aal++r+ktG G  v +++
  MMETSP1174-20130828|9501_1   6 FSTAFEVLNLGKASVQLDLKKHEDKESLLKLLESADVFITNIRIDCLRRLGLDYDDLHERFPHLVYAHLSAYGRRGPDAGLPGYDVGAFWAASGMASYIQPAGHAHMYPSAFGDVTSGSGLAAGVAAALVKRHKTGSGGIVDTSL 150
                 577799********************************************************************99***********9877777777778899999999*****************************9998876 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.8e-07
   TIGR03253   3 aleGikvldfth..vqsGPsctqllawlGadvikierpgvGditrgqlrdipdvdslyftmlnankrsitldikapeGkevleelikkadvlvenfkPGaldrmGftwekiqe.lnPrlilasikGfde.g.....sayenvkayenvaqaaGGaasttGfedGvPlvsaaalGdsntGlhlvigilaallqrektGrGqrvavamq 200
                 +l+Gi ++d++     +  ++tq+l  lGa+++k+  p++Gd    qlrd++      f ++n  k  +t d  a +   v+    ++a vlv n  P +l         +++ l   ++++ i  +++ g     s  ++   y  +++ + G  s+       P + +  +   n+          a+ + ++tG+G+ v ++m 
  MMETSP1174-20130828|9501_1 328 PLDGITIVDLSYglGVAAAATTQFLQALGAKIVKVV-PEAGDE--WQLRDKR-----IFAQFNYGKELVTADYSAVH--SVMAS--HNASVLVTNAPPSVLAASQADQASLEKaLGHEVVYSLITPWGKdGseknrSDLASYWGYSGISRFMTGKFSADTLVRPQPFMLGELITSVNSAAA----TAIAIFKVTRTGKGEMVDTSMA 518
                 89*******985223567789**************7.559996..6899976.....799*********99998765..67876..799*********99987777766665427777888888766531311011233445567888888888888888888888876666666666555....5556677899999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.49
# Mc/sec: 1861.32
//
Query:       MMETSP1174-20130828|9507_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.68
# Mc/sec: 277.57
//
Query:       MMETSP1174-20130828|9506_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.4   9.7      0.083   11.0   1.8    2.5  3  TIGR01396 FlgB: flagellar basal-body rod protein FlgB
        1.1    6.5   7.7        2.1    5.6   0.9    2.2  2  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
        1.4    6.4   9.3        0.3    8.5   2.0    2.2  2  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family


Domain annotation for each model (and alignments):
>> TIGR01396  FlgB: flagellar basal-body rod protein FlgB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.15     2e+02      51     104 ..      36      86 ..      26      90 .. 0.66
   2 ?   11.0   1.8   6.1e-05     0.083      15     102 ..      83     171 ..      66     190 .. 0.81
   3 ?    0.4   0.3      0.11   1.5e+02      60      91 ..     172     203 ..     158     238 .. 0.48

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.15
   TIGR01396  51 keresklelaktdtkkrhlnaeksakveaslvldettqvkndgNnVdidsEmae 104
                 k+r ++l+l +++ +k+ + + +      +l ++e++ ++  + n d d+ m e
  MMETSP1174-20130828|9506_1  36 KNRLEELKLHEENRRKEAMRSRQL---AERLGVEEAHMLEYQQFNMDWDRKMNE 86 
                 566667777777777666666654...566777777777777777777777766 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.1e-05
   TIGR01396  15 rslRqevianNiANvdtPgYkakdvsFeeeLkkalqkeresklelaktdtkkrhlnaeks..akveaslvldettqvkndgNnVdidsEm 102
                 +   +e +a+ +A + t   ka+  +F+e+L +++q+ + s+  l +++ + rhl+ +k   ++ +++l+ d  +  + d   +  ++Em
  MMETSP1174-20130828|9506_1  83 KMNEYEKHASELADAMTERHKAELRDFQENLLHKQQRPKFSRELLNLREIQ-RHLAMQKDytEAHKIKLKCDALEAWELDKWKILKQQEM 171
                 45567889**********************998888888888877777777.99999988667788888888888777777666666666 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.11
   TIGR01396  60 aktdtkkrhlnaeksakveaslvldettqvkn 91 
                 +++++k +h ++++  + + +++   ++q k+
  MMETSP1174-20130828|9506_1 172 FQREAKFKHQKQQELLALRKRIQTGREEQKKQ 203
                 44444444444444443344443333333332 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.5    0.0026       3.6     160     242 ..      59     146 ..      47     154 .. 0.67
   2 ?    5.6   0.9    0.0015       2.1     168     231 ..     154     215 ..     146     224 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0026
   TIGR02280 160 lgekldaetaa.....ewGliwqvvddealadevqalaahlakqptrgla.likralqaaetnsldtqldlerdlqrelGrsadyaeGv 242
                 l+e+l  e+a+     ++ + w     +++++++++la+ +++     l  +  + l+  +  +++ +l   r++qr+l   +dy+e  
  MMETSP1174-20130828|9506_1  59 LAERLGVEEAHmleyqQFNMDWDRKM-NEYEKHASELADAMTERHKAELRdFQENLLHKQQRPKFSRELLNLREIQRHLAMQKDYTEAH 146
                 55555555554111114445554433.3456677777777777777677525566778888999**999999*************9975 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0015
   TIGR02280 168 taaewGl.iwqvvddealadevqalaahlakqptrglalikralqaaetnsldtqldlerdlqre 231
                   ++w l  w++++++++ +     a+   ++  + lal kr     e ++ + +ldler lqr 
  MMETSP1174-20130828|9506_1 154 ALEAWELdKWKILKQQEMFQRE---AKFKHQKQQELLALRKRIQTGREEQKKQRELDLERLLQRY 215
                 5556666347777766554432...22222334456778888777888899999*********96 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.5     0.022        30      69     138 ..      74     162 ..      65     165 .. 0.63
   2 ?    8.5   2.0   0.00022       0.3      63     127 ..     164     232 ..     158     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.022
   TIGR03881  69 rqfgldlekfk...............eekklviid...allkeke.dewslkelsieellekvieakkllgvskarlvidsmsafwldk 138
                 +qf++d+++ +               e +k  + d   +ll++++  + s++ l++ e+  ++   k++    k +l  d++ a+ ldk
  MMETSP1174-20130828|9506_1  74 QQFNMDWDRKMneyekhaseladamtERHKAELRDfqeNLLHKQQrPKFSRELLNLREIQRHLAMQKDYTEAHKIKLKCDALEAWELDK 162
                 78999988777566444444444444333333333555444444404445556788888888888888888888888888888888877 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00022
   TIGR03881  63 sivrqarqfgldle.kfkeekklviid.allkekedewslkelsieellekvieakkllgvsk..arlv 127
                 +i++q ++f+ + + k +++++l+ +  ++   +e++ +++el++e ll++ ++ k+ l   +   r+ 
  MMETSP1174-20130828|9506_1 164 KILKQQEMFQREAKfKHQKQQELLALRkRIQTGREEQKKQRELDLERLLQRYRNVKNELEAQQnlERIR 232
                 79999999987643234455555555516777788889999****************998776455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       426  (0.103852); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.75
# Mc/sec: 431.16
//
Query:       MMETSP1174-20130828|9513_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|9510_1  [L=1498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1448.4   0.0          0 1448.2   0.0    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   6.7e-137  454.1   0.0   2.5e-136  452.2   0.0    1.9  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    1.4e-21   74.7   0.0    7.6e-11   39.3   0.0    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    2.1e-21   73.0   0.2    1.5e-10   37.1   0.0    2.1  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    6.7e-17   58.3   0.0      7e-08   28.4   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    6.9e-17   59.2   0.0    5.4e-08   29.9   0.0    2.3  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    1.6e-16   58.0   0.0    9.9e-08   29.1   0.0    2.2  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    5.4e-13   45.9   0.0    9.2e-13   45.1   0.0    1.2  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    1.7e-12   45.0   0.1    9.5e-11   39.3   0.0    3.0  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    5.4e-12   43.7   0.0    1.6e-11   42.2   0.0    1.8  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    3.4e-10   36.3   0.0      7e-10   35.3   0.0    1.4  1  TIGR01815 TrpE-clade3: anthranilate synthase
      5e-08   30.2   0.0    3.3e-05   20.9   0.0    2.4  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    1.3e-07   28.6   0.6    1.6e-05   21.7   0.0    2.2  2  TIGR00877 purD: phosphoribosylamine--glycine ligase
    1.7e-07   28.1   0.0    0.00039   17.1   0.0    2.2  2  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    8.3e-07   26.5   0.0    9.2e-06   23.0   0.0    2.3  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0001   18.2   0.0    0.00076   15.4   0.0    1.9  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase
    0.00023   18.9   0.1     0.0027   15.4   0.0    2.2  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
     0.0083   13.5   0.0      0.029   11.7   0.0    1.9  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1448.2   0.0         0         0       2    1051 ..     410    1469 ..     409    1470 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1448.2 bits;  conditional E-value: 0
   TIGR01369    2 kredikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtd........eeladkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineevakseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkekeaesdeeleealkkpndrRlfaiaealrrg.vsveevyeltkidrffleklkklvelekeleee.klkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeeekddvevtek.kkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleele..kgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseea.ekilellkeeeielvinltskkkkaaekgykirreaveykvplvteletaeallea 1051
                  +r  ++kvlv+GsG+++igqA+EFDYsG+qa+kalkeeg evvL+n+niA v+t+        ++ ad+v+++P+t+ +ve++i++E+pD+i++++GGqtaLn++vele +G+ ekygvk+lGt+ve+i  +edR+ F+++l+ei+e++a s ++++ +ea+eaa++igyP+++R+af+lgG Gsgi+++e++l  +  ka+++s  +q+lve+s+ gwkE+EyEvvRD++dnc++vcn+En+DplG HtGdsiv+aPsqtL+++ey++lRd+++k +r+lg++gecn+q+al+P+s +y +iEvn+R+sRssALAskAtGyP+A vaakl++G+ Lde+kn vt+ t A+fEPslDY+v+kiPrwd++kfe+v++k+g+ mksvGEvm+igrt+ee++qka+r+++ ++ g++   ++  +++++  +l++p+drR+faia+ l ++ +sv ++++lt id +fl +lk++ + + +++    ++ ++ +++ + k+lGfsd+q+ak+++++e++vr+ rk+lg++p+vk++Dt+aaE++a t+YlY ty++ + d ++       +vlG G++Rig++vEFD+cav+a+++lr+ g+++i++nynPEtvstDyd++d+LyFeel+ e+v+di+e+e+ +gvi+++gGq+++nl+  l+eagvk++Gtsae idraEdR+kFs++ld+lg+kqp+++e+++++ea  +a+e+gyPvlvRpsyvl+G+am++++  e l+++l  av vs +kP+++ k+le+ +E+++Davad++ev+ a++ eHiE aGvHsGD+ l+lppq+++  +  +++++++kiakel++kG++n+qf++k+ +v viE+n+RasR++Pfvsk++gv++++ a+kv++g + ++++  +  +++  + +v++k+a+fsf++l+g+d+vlg+em+stGEv+++g +++ea+lka+l++++ki++k ++l+sv+d+ ++e+++ + +l+e+g++++ate+t+++l+e+g+ +++v+   +++ ++i +llke++++lvinl++  +k+ +++y++rr+av+y++pl+t+ +++++++e+
  MMETSP1174-20130828|9510_1  410 ERPVVNKVLVLGSGGLSIGQAGEFDYSGAQAIKALKEEGKEVVLMNPNIASVQTNvgadgtggSAGADAVFFLPVTPDFVEEVIKREKPDGIIISMGGQTALNCGVELEATGIFEKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSVACDTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLDMGGKAFSLS--PQILVERSMLGWKEVEYEVVRDAEDNCVTVCNMENFDPLGTHTGDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHPTSLEYCIIEVNARLSRSSALASKATGYPLAFVAAKLSLGMRLDEIKNAVTEVTQACFEPSLDYCVTKIPRWDMSKFEGVSTKIGSAMKSVGEVMSIGRTWEESMQKAMRMVDPSIPGFQPM-EHFADKDAMALELTEPSDRRIFAIAQGLYEKtHSVADLHNLTAIDPWFLMRLKQISDGADTIMAFgDINSVSYDEMLRSKQLGFSDQQMAKFIGTTEDAVRRRRKDLGVTPFVKQIDTLAAEYPAMTNYLYMTYHASESDLSKDAAhGGTMVLGNGAYRIGSSVEFDWCAVSAIRTLRNLGHRSIMVNYNPETVSTDYDECDQLYFEELSRERVMDIYETENADGVIISVGGQIPQNLSVPLAEAGVKLMGTSAEMIDRAEDRQKFSAMLDKLGVKQPAWSELRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALAVGVSADKPIVVTKFLENCMEIEMDAVADDGEVISAAMHEHIEFAGVHSGDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAKGADVLVIECNLRASRSFPFVSKTMGVDFIEAATKVMTGGDYSDMNlpQLGERNRPEGYVGCKTAMFSFTRLRGADPVLGVEMASTGEVACFGANKHEAFLKAMLSTGFKIPEK-KILVSVQDSLQDEMVHSIFSLHEMGYELLATEKTSAYLAEKGVPSTLVHFPDSKEsPNIRNLLKEKDVDLVINLPTYASKQLQNNYVVRRTAVDYGIPLMTNPQIVKLFVES 1469
                  567799************************************************8333333334569******************************************************************************************************************************************..9************************************************************************************************************************************************************************************************************9997.555666667889**************8766549***************************999887899*******************************************************************98888776654789**********************************************************************************************************************************************************************************************************************************************************************************************************************9999885332344555689****************************************************999.7889999***************************************99876554449***************************************************9986 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.2   0.0  1.1e-138  2.5e-136       1     359 [.      36     392 ..      36     394 .. 0.96
   2 ?   -1.5   0.0      0.86     2e+02     208     225 ..     489     506 ..     479     510 .. 0.80

  Alignments for each domain:
  == domain 1    score: 452.2 bits;  conditional E-value: 1.1e-138
   TIGR01368   1 atlvledGtvfegksfgaekevvGevvFnTsmtGYqEiltDpsYkgqivvltyplignygvneeda..........eskkikvkglvvkelskevsnyrakesLeeflkeegivaiegvDTRalvkklRekgsmkavisteksekeelvekakespkvkevnlvkevstkeayeleqkakkegkklrvvvidlGvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkkllea..kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefveli 359
                 atlvledGt + g+sfga++ v GevvF T+m+GY E+ltDpsYkgq++ ltyp+ignygv++ ++          es +i+++++vv+++s+++s+++a++sL e+l++eg++++ g+DTRal++klR++g+m++ i  +      +++ a ++p+++  nlv+evs k+++ + +     g+ ++++++d+G+K+ni+r+Lvkrg+e+tvvp+d++++e+++ + dg++lsnGPGdP+++ e++e++kk++ a  ++PifGIclG+ql++la+ga+t+kl fG+rG+N+pv+++ tg+++it qNHgya+d+ +l++ e++v ++n nDg++eg+ h+++p+fs Q+HPea+ Gp+dt+++Fd f++  
  MMETSP1174-20130828|9510_1  36 ATLVLEDGTRLPGYSFGARTGVSGEVVFSTGMVGYTESLTDPSYKGQLLSLTYPMIGNYGVPDPNVvdefglakgfESGQIHASAIVVQDYSENYSHWTANSSLGEWLEREGVPGLCGIDTRALTRKLRQNGTMLGSIHIDG-----EAAPAPQDPNTR--NLVAEVSRKDVKVFGK-----GNPQKIIAVDCGIKHNIIRMLVKRGAELTVVPWDYKFSEVMHEY-DGLFLSNGPGDPSMCAETVEQLKKTMAAdeTKPIFGICLGNQLMGLAAGAETIKLPFGNRGQNQPVTNVLTGECYITPQNHGYAIDDTTLPS-EWKVLFTNTNDGSNEGIVHTSKPYFSAQFHPEAQGGPNDTANFFDWFLDCC 392
                 68*************************************************************99999**********************************************************************9999.....233456788886..9***********9994.....55568***************************************.************************99887799*******************************************************99875.5*********************************************99865 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.86
   TIGR01368 208 saeeikklnpdgillsnG 225
                   e ik+ +pdgi++s G
  MMETSP1174-20130828|9510_1 489 VEEVIKREKPDGIIISMG 506
                 4567999*********88 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.8e-11   6.3e-09      94     323 ..     522     746 ..     515     758 .. 0.87
   2 !   39.3   0.0   3.3e-13   7.6e-11      96     319 ..    1066    1283 ..    1057    1291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.8e-11
   TIGR00514  94 lveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdc..siqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflld.kegefyflemntriqvehpvtemvtgvdlikeqirvakGeklsl 323
                 + e+ g++ +G s e+i    d++   + +++++  + p      ++ +eave a++iGyp++i+++   GG G  +  +e++l ++        ka    +++ +e+ +   + ve +v+ d   n v +++ +    +   +   +  aps +l++e  + + ++a+k+++++g +g   +++ l+ ++ e+  +e+n+r+    +++ + tg  l     +++ G++l  
  MMETSP1174-20130828|9510_1 522 IFEKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSV--ACDTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLDM------GGKAFSLSPQILVERSMLGWKEVEYEVVRDAEDNCVTVCNMENfdPLGTHTGDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHpTSLEYCIIEVNARLSRSSALASKATGYPLAFVAAKLSLGMRLDE 746
                 6789999****************************999976..47999*******************999999*9999999887654......2344445799************************99987655422688888999999**********************************97762566899*********99999999999999888888888888764 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 3.3e-13
   TIGR00514   96 eesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerd....csiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGe 319 
                  +e+g++++G sae i    d++   +++ k gv     s+  + d++ea++ a+e+Gypv+++ +    G  + v+++++ l   l+ a         ++ + + kf+en   +e+  +ad+ G+v+  +  +      +      ll   p   +t+  r ++ +++ k+ak+++ +g   v+fl +   +   +e n r     p   + +gvd+i++  +v +G 
  MMETSP1174-20130828|9510_1 1066 AEAGVKLMGTSAEMIDRAEDRQKFSAMLDKLGVKQPAWSE--LRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALAVGV----SADKPIVVTKFLENCMEIEMDAVADD-GEVISAAMHEhiefAGVHSGDASLL--LPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAK-GADVLVIECNLRASRSFPFVSKTMGVDFIEAATKVMTGG 1283
                  67899****************************9877776..6899***********************************99888776543....34677899****************97.7777665444111145666666666..68899******************************998.77899*****************************99885 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   6.4e-13   1.5e-10      96     326 ..     524     749 ..     489     759 .. 0.84
   2 !   33.9   0.0     6e-12   1.4e-09      94     322 ..    1064    1286 ..    1031    1305 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 6.4e-13
   TIGR01235  96 ekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferd..csvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskkl 326
                 ek G+  +G + e++    d+    ++  +++  + P+     +tl+e+++ a++iGyP+++++a+  GG G  +  +e+++ d   +a s         ++ ve+ +   k +e  ++ d + n v + + +    +       + +aP+++ls+e  + l ++a+k  ++ +  +   +++ +   + ++  ievn+r+    +++ + tG  +     k+  G+ l+  k 
  MMETSP1174-20130828|9510_1 524 EKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSV--ACDTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLDMGGKAFSL------SPQILVERSMLGWKEVEYEVVRDAEDNCVTVCNMEnfDPLGTHTGDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHPTSlEYCIIEVNARLSRSSALASKATGYPLAFVAAKLSLGMRLDEIKN 749
                 566777777777777777777777777777777777765..579**********************************99999987776664......56899**********************9988655411467777888999************************************9887776999*******************9888777777777777775554 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 6e-12
   TIGR01235   94 kvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvv.h.lferdcsvqrrh.qkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslp 322 
                     +aG+  +G +ae++d+  d+ +   +  k gv   P+   +  +++e+l fa++ GyPv+++ +y   G  m v    e ++  +  a         +  + v k++e+   ie+  ++d+ G+v+   ++e        h      + P +++++  r ++ + + k+ake n ++   v+fl +   +   ie n r         +  G+d ++a  kv+ G   +
  MMETSP1174-20130828|9510_1 1064 PLAEAGVKLMGTSAEMIDRAEDRQKFSAMLDKLGVKQ-PAWSELR-DTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALA----VGVSADKPIVVTKFLENCMEIEMDAVADD-GEVIsAaMHEH-IEFAGVHsGDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAKGA-DVLVIECNLRASRSFPFVSKTMGVDFIEAATKVMTGGDYS 1286
                  5679*********************999999999975.7776665.568899*************************99988887665544....445567899******************97.56652313443.443333304455578999********************************8876.899******************************9997655 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.3e-10   1.2e-07     137     313 ..     565     737 ..     556     759 .. 0.85
   2 !   28.4   0.0   3.1e-10     7e-08      13     318 ..     993    1283 ..     990    1303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 5.3e-10
   TIGR02712 137 esleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffs.dagvflekfvekarhvevqilGdgkGkvvalgerdC..slqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvr 313
                 ++l ea+eaa++igyP+m++s+   GG+G   ++++++l +       +g + fs +  + +e+ +   + ve  ++ d + + v++ + +    l       +  +P+  l++e  + l+++a k ++++   +   +++   ++  e+  +evn+rl    +++ + tg  l  +  +
  MMETSP1174-20130828|9510_1 565 DTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLD-------MGGKAFSlSPQILVERSMLGWKEVEYEVVRDAEDNCVTVCNMENfdPLGTHTGDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHPTSLEYCIIEVNARLSRSSALASKATGYPLAFVAAK 737
                 6789*********************************9976.......45555552779**********************9998876554322588888888889*****************************************************988888888888666555544 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.1e-10
   TIGR02712   13 avriirtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGy.GflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGd.gkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaage 318 
                  av  irtl++lg rs+ v  +++  s+  ++ d+ +           l+ +++++i ++ +a+ +i    G + +n  ++  +++ag+ ++G ++e +++   + +  ++  + gv   p  + l++ +eal+ aee+gyPv+++ +    G  ++  +  e l++ f     l+    +d+ + + kf+e+   +e+  + d g+    a+ e                P  n+++ +r ++ + ++k+a+++n ++   v+f+  +k  ++  +e n r     p   + +g+d++e   ++ +g 
  MMETSP1174-20130828|9510_1  993 AVSAIRTLRNLGHRSIMVNYNPETVSTDYDECDQLYFE--------ELSRERVMDIYETENADGVIISVgGQIPQN--LSVPLAEAGVKLMGTSAEMIDRAEDRQKFSAMLDKLGVKQ-PAWSELRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKA-FL---ALAVGVSADKPIVVTKFLENCMEIEMDAVADdGEVISAAMHEHIEFAGVHSGDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFL--AKGADVLVIECNLRASRSFPFVSKTMGVDFIEAATKVMTGG 1283
                  8899**********************999888876542........38899***********98776661566666..566899********************************86.555567999****************************9999999875.54...456677799*****************97765155555567665443334444444557999************************99999998..56778999***********************9988876654 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.3e-09   5.2e-07      51     247 ..     486     689 ..     477     705 .. 0.69
   2 !   29.9   0.0   2.4e-10   5.4e-08      51     271 ..    1034    1256 ..    1001    1265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.3e-09
   TIGR01142  51 adalravierekPdfivpeie...a....iatdaLlelekegyevvPnaratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg.vvefc.....aPiGhrqedgdykesWqPqelsekaleeakeiakrvvdaLG 247
                  d++++vi+rekPd i+  +    a    ++++a   +ek g++v+ ++  t ++ +  ++     +e++ + a+    d+l+e  ea+++iG+P+++++  +  G G+ +++ ++++ +   +a     + +++++ve  +    e+   +vr +++  v+ c     +P+G +   gd       q+ls++  +  ++ a + v  LG
  MMETSP1174-20130828|9510_1 486 PDFVEEVIKREKPDGIIISMGgqtAlncgVELEATGIFEKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSVACDTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLDMGGKAF----SLSPQILVERSMLGWKEVEYEVVRDAEDnCVTVCnmenfDPLGTHT--GDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLG 689
                 58999*********99877642112111134445555666679*********999999999999999************************************************99977655544....4445555554443333444444444333322222111115666543..44444444456666666666666666666666 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 2.4e-10
   TIGR01142   51 adalravierekPdfivpei.eaiatdaLlelekegyevvPn.aratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdgvv..efcaPiGhrqe.dgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevspr 271 
                  ++ ++ + e e+ d ++  +   i  +  + l ++g++++ + a+ +  + +r++   +  ++lg++  +++     +e  + +e++G+P++v+p    sG    v ++pe +++    a   + + ++ ++v +f++  +ei + +v   ++v+  ++ + i    +  gd      Pq+++  +  +++++ +++ ++L  +G f v+++ kg +v++ e   r
  MMETSP1174-20130828|9510_1 1034 RERVMDIYETENADGVIISVgGQIPQNLSVPLAEAGVKLMGTsAEMIDRAEDRQKFSAM-LDKLGVKQPAWSELRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALA--VGVSADKPIVVTKFLENCMEIEMDAVADDGEVIsaAMHEHIEFAGVhSGDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAKGADVLVIECNLR 1256
                  56677777777777655555145666667788888988886536777888888888655.699********9999999999********************************8876554..5677788899****************999885411344555555441567777889****************************************99887665 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.2e-09     5e-07      83     285 ..     520     714 ..     436     715 .. 0.87
   2 !   29.1   0.0   4.3e-10   9.9e-08      89     284 ..    1068    1254 ..     984    1281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.2e-09
   TIGR01205  83 qglLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeydeevlveea.ikgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDffleke.geiylnEiNt 285
                  g++e +g++ +G +v+  +++ d+ ++   l++ + ++a+ ++    + +  e  +e+++++g+p++++ a +   +G  ++++e +l ++  +af+++ ++lve+  +  +e+e  v++ +   +++ +++ ++    +d     + +s  ++ +  ls+ee++ +++ a+k++++lg  g   + + l+ +  e+ + E+N 
  MMETSP1174-20130828|9510_1 520 TGIFEKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSVAC--DTLA--E-AVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQLLDMGGKAFSLSPQILVERSmLGWKEVEYEVVR-DAEDNCVTVCNMEN----FDPLGTHTGDSIVIAPSQTLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHPTsLEYCIIEVNA 714
                 699**************************************9877..2333..2.3467899**********99999*****************************9978889******99.66688999999998....4444444544444555555*********************************99999******95 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 4.3e-10
   TIGR01205   89 lgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeaf..eydeevlveeaik.grelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiN 284 
                  +g++ +G + +    + d+  +  +l++lg++++++  l+ ++e+      + +e++g+pv+v+p+   S   ++++++ e+l+++l+ a+  + d+ ++v ++++   e+e+ ++ ++  + ++++ e+      ++++   + +++ l  p ++++    ++++++ k+ k+l+ +g   v f+ + +  +++ E N
  MMETSP1174-20130828|9510_1 1068 AGVKLMGTSAEMIDRAEDRQKFSAMLDKLGVKQPAWSELRDTDEA-----LAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALAVgvSADKPIVVTKFLEnCMEIEMDAVADDGEVISAAMHEH------IEFAGVHSGDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAKGA-DVLVIECN 1254
                  6666777777777777888889999**************433333.....347899*****************************9988862256889******65168999999997774444444443......6688888888888999999******************************99955.88888888 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     4e-15   9.2e-13      18     207 ..     219     395 ..     207     401 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 4e-15
   TIGR01823  18 tynvvallekaldvrvsvitvhsDkldddllellqlfdaivvGPGPGdPnv.akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflklalin 207
                  +n++++l k     +  ++v +D    ++ e ++++d + +  GPGdP   a+ v  l++       +  P++GiCLG q + La Ga+  +lp+   Gq + v+ + +   + +    + + h   +   +  s    +l  + +d     + ++ kP+f  q+hPe+ +  +++  ++  fl+ + ++
  MMETSP1174-20130828|9510_1 219 KHNIIRMLVKRG---AELTVVPWDY---KFSEVMHEYDGLFLSNGPGDPSMcAETVEQLKKTMAAD--ETKPIFGICLGNQLMGLAAGAETIKLPFGNRGQNQPVTNVLTGE-CYI----TPQNHGYAIDDTTLPS-EWKVLFTNTNDGSNEGIVHTSKPYFSAQFHPEAQGGPNDTANFFDWFLDCCKNP 395
                 578888887765...4589999997...56778899*************99899999998876655..678******************************99987665543.333....2344555555555444.2344455555555678889****************9999999999999987765 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   4.2e-13   9.5e-11      11     180 ..     219     387 ..     211     395 .. 0.74
   2 ?    1.2   0.0      0.19        44      34      75 ..     490     532 ..     483     539 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 4.2e-13
   TIGR00888  11 aqliaRrlrelgvyselvpatttleeikevepkgiilsGgPe..svkaenaekvdeki.felgvPvlGiCyGmqllakalGgeveraekreygkaelevldedelfkglekelkvWmshgDkv..kelPegfkvl.aksencpvaalkkeekklyGvqfhPevthtekGkellenf 180
                 ++ i R l + g +  +vp++ + +e+   e  g+ ls gP   s  ae  e++++++  +   P++GiC+G ql+  a G e+ +    + g+ +  v+  + l  +   +      hg ++  ++lP+++kvl ++++    + + +++k+ +  qfhPe +   + ++ + ++
  MMETSP1174-20130828|9510_1 219 KHNIIRMLVKRGAELTVVPWDYKFSEVM-HEYDGLFLSNGPGdpSMCAETVEQLKKTMaADETKPIFGICLGNQLMGLAAGAETIKLPFGNRGQNQ-PVT--NVLTGECYIT---PQNHGYAIddTTLPSEWKVLfTNTNDGSNEGIVHTSKPYFSAQFHPEAQGGPNDTANFFDW 387
                 789***********************99.5669*****99964467778888777655167889******************99988777766654.222..2343333332...2344444422679*****9835677799*******************88765555444444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.19
   TIGR00888  34 leeikevepkgiilsGgPesvkaenaekvdekife.lgvPvlG 75 
                 +e ik  +p gii+s g +   + + e  ++ ife  gv vlG
  MMETSP1174-20130828|9510_1 490 EEVIKREKPDGIIISMGGQTALNCGVELEATGIFEkYGVKVLG 532
                 5678999********8888887777776666666526888888 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   7.1e-14   1.6e-11      12     176 ..     219     374 ..     211     385 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 7.1e-14
   TIGR00566  12 tynlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaissleliehlaGkl..PilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPes 176
                  +n++++l ++gae++v   d    + + +   l    +s GP+ P   a  + +l + +a     Pi+G+ClG q +++a Ga+ +++     G+ + ++       +      ++ + + h   ++  tl++  +v  ++ ++    +i h  +p +  qfhPe+
  MMETSP1174-20130828|9510_1 219 KHNIIRMLVKRGAELTVVPWDYKFSEVMHEYDGL---FLSNGPGDPSMCAETVEQLKKTMAADEtkPIFGICLGNQLMGLAAGAETIKLPFGNRGQNQPVTNVL--TGE------CYITPQNHGYAIDDTTLPSEWKVLFTNTNDGSNEGIVHTSKPYFSAQFHPEA 374
                 5799999999999999999888777777666555...59**********99965555555554346***********************888888887776433..223......4445589****************99999998999****************96 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.1e-12     7e-10     503     688 ..     193     374 ..     179     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.1e-12
   TIGR01815 503 aakeesavakvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdf.dvketikaalard..lpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelkvt.aesedgvimaiehrklpvaavqfhpes 688
                 a+ + ++v+  g+G+   ++  +  + h +   l + Ga +t +   +  + + +   d + ls GpG p+   +  e +k+++a d   p+fG+clG q +  a G e  +l+    G++  +  + +       +e     + h    +   lp e kv  ++++dg   +i h  +p  + qfhpe+
  MMETSP1174-20130828|9510_1 193 AEVSRKDVKVFGKGNPQKIIAVDCGIKHNIIRMLVKRGAELTVVPWDYKFSEVMH-EYDGLFLSNGPGDPSMCaETVEQLKKTMAADetKPIFGICLGNQLMGLAAGAETIKLPFGNRGQNQPVTNVLT-------GECYITPQNHGYAIDDTTLPSEWKVLfTNTNDGSNEGIVHTSKPYFSAQFHPEA 374
                 566778888888888877888888999****************998876655544.458889********96323444455655544227*****************************9988754333.......4667778899999**********9863789**********************96 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0035      0.81      63     129 ..     518     585 ..     513     597 .. 0.84
   2 !   20.9   0.0   1.4e-07   3.3e-05      65     131 ..    1062    1129 ..    1028    1155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0035
   TIGR02144  63 asaalleelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKP 129
                  ++ ++e+ Gvkv+  s e+iia++d+ + + kL + +  +  ++      +a+++a+++GyP++++ 
  MMETSP1174-20130828|9510_1 518 EATGIFEKYGVKVLGtSVETIIATEDRQIFSDKLHEIDEKIAPSVACDTLAEAVEAAHHIGYPLMIRS 585
                 567799*******9725699*******99999999987777666666667899***********9875 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.4e-07
   TIGR02144   65 aalleelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPve 131 
                  +  l e+Gvk +  s+e+i +++d+   ++ L k gv +P +    d ++al  aee+GyPv+++P  
  MMETSP1174-20130828|9510_1 1062 SVPLAEAGVKLMGtSAEMIDRAEDRQKFSAMLDKLGVKQPAWSELRDTDEALAFAEEVGYPVLVRPSY 1129
                  566778899988625678899*********************************************75 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0084       1.9      71     206 ..     506     639 ..     447     685 .. 0.76
   2 !   21.7   0.0   7.1e-08   1.6e-05      40     210 ..    1021    1187 ..    1001    1205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0084
   TIGR00877  71 gpEapLvlGl....vdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgkt 206
                 g    L  G+    +  +e+ G+kv+G + e  +   +++   d l++++ ++a   + + ++ea e  ++ g p ++++     +G g  +++de + l++  ++++       + ++++E  + G +Ev + ++ d ++
  MMETSP1174-20130828|9510_1 506 GGQTALNCGVeleaTGIFEKYGVKVLGTSVETIIATEDRQIFSDKLHEIDEKIAPSVACDTLAEAVEAAHHIGYP-LMIRSAFALGGLGSGICNDEAQLLDMGGKAFSL------SPQILVERSMLGwKEVEYEVVRDAED 639
                 556667667644446789*************9999888998899999***************************9.55565556699*******999988888777776......47899998877756888888887765 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 7.1e-08
   TIGR00877   40 lekekeveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAa.klEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefle.GeEvsllalvdgktvvpl 210 
                   +++ ++  e+   e+v+++ ++++ d ++i+    + + l   l eaG+k +G ++e   + E   +f  ++l+k g++++ ++++ + +ea ++ ee+g p ++v+++ + +G    v+++ e  ++ ++ ++       a +++v+ +fle   E+ + a+ d  +v+  
  MMETSP1174-20130828|9510_1 1021 YDECDQLYFEELSRERVMDIYETENADGVIISVGGQIPQNLSVPLAEAGVKLMGTSAEMIdRAEDRQKF-SAMLDKLGVKQPAWSELRDTDEALAFAEEVGYP-VLVRPSYVLSGAAMNVAHTPERLKAFLALAVGV----SADKPIVVTKFLEnCMEIEMDAVADDGEVISA 1187
                  55666777777778999999999999999999999999999999************9987255655666.589*****************************9.9****************9998877776655555....6999********83589999999998888764 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00064      0.15     124     290 ..     578     751 ..     568     761 .. 0.74
   2 !   17.1   0.0   1.7e-06   0.00039     123     280 ..    1119    1283 ..    1114    1298 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00064
   TIGR03909 124 efPvlvkPscesssegvriindrkeleel..lklesednlvveeyleG.esvsleviGdkgnyavvkiteleid..aty..dCkrvlaPae.ldlekkdefrelalklaaelnlkGimdvevilheeklk..vleidarlPsqtPivvykssGinlvelllkafteGlklkeikelg 290
                 ++P++++ + + +  g  i nd+ +l ++        ++++ve  + G + v  ev+ d ++  v      ++d   t+  d   v+aP + l+ e  + +r+ a+k  ++l + G  +++  lh++ l   ++e++arl s+      k++G  l  +     + G++l eik++ 
  MMETSP1174-20130828|9510_1 578 GYPLMIRSAFALGGLGSGICNDEAQLLDMggKAFSLSPQILVERSMLGwKEVEYEVVRDAEDNCVTVCNMENFDplGTHtgDS-IVIAPSQtLSNEEYHMLRDTAIKTVRHLGIVGECNIQYALHPTSLEycIIEVNARL-SRSSALASKATGYPLAFVA-AKLSLGMRLDEIKNAV 751
                 57888888888888888888888888888633445577888887766646788999988888766555444555333441155.7899987478888999*************************99875449*******.5566666899999876554.5577788888888764 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.7e-06
   TIGR03909  123 sefPvlvkPscesssegvriindrkeleellkle....sednlvveeyleGesvsleviGdkgnyavvkit...eleidaty..dCkrvlaPaeldlekkdefrelalklaaelnlkGimdvevilheeklkvleidarlPsqtPivvykssGinlvelllkafteG 280 
                   ++Pvlv+Ps   s   +++ ++ + l+ +l l     + + +vv  +le + + +e+  + ++ +v+  +   ++e+   +  d   +l P +     + + ++++ k+a+eln+kG  +v+ + +  ++ v+e + r     P  v k+ G++++e  +k  t+G
  MMETSP1174-20130828|9510_1 1119 VGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALAvgvsADKPIVVTKFLE-NCMEIEMDAVADDGEVISAAmheHIEFAGVHsgDASLLLPPQNITPYTRGHVEDMTRKIAKELNIKGPFNVQFLAKGADVLVIECNLRASRSFPF-VSKTMGVDFIEAATKVMTGG 1283
                  579********999999999999999999866532221455688999998.56667765555555555433111566665554488788899999999999**************************************8777775.6899***********99999 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.33        75      61     146 ..     516     602 ..     494     606 .. 0.83
   2 !   23.0   0.0     4e-08   9.2e-06      68     189 ..    1065    1186 ..    1032    1274 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.33
   TIGR00768  61 glavlraleslGveviNss.qaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqe 146
                 +l+++ ++e+ Gv+v+  s + i + +d+ + s +L +    +  ++      ea +++ +ig+P+ ++++f   G +   ++d+++
  MMETSP1174-20130828|9510_1 516 ELEATGIFEKYGVKVLGTSvETIIATEDRQIFSDKLHEIDEKIAPSVACDTLAEAVEAAHHIGYPLMIRSAFALGGLGSGICNDEAQ 602
                 56778899999**99986637899999999999999998888888888899999999***********9999777766666666665 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 4e-08
   TIGR00768   68 leslGveviNss.qaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksggrdiRvfVvgdevva 189 
                  l ++Gv+++  s ++i++a+d+ + sa+L k g+ +p +  + + +ea +++ee+g+Pv ++p     G ++  +++ + +++ l     +  + k ++v ++ ++  + +  ++  ++ev+ 
  MMETSP1174-20130828|9510_1 1065 LAEAGVKLMGTSaEMIDRAEDRQKFSAMLDKLGVKQPAWSELRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVAHTPERLKAFLALAVGVS-ADKPIVVTKFLENCMEIEMDAVADDGEVIS 1186
                  567899999754289**************************************************999999999999999999988877776.567777777777555555555555666664 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14        33     235     296 ..     565     625 ..     557     642 .. 0.70
   2 !   15.4   0.0   3.3e-06   0.00076     203     295 ..    1075    1168 ..    1069    1222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.14
   TIGR02068 235 qsaeeaeeaaeelGyPvvikPl..dGnhGrGvtiniesreeiesayeaakeesseviverfikG 296
                 ++++ea+eaa+++GyP++i+     G  G G+  +     ++      a   s +++ver + G
  MMETSP1174-20130828|9510_1 565 DTLAEAVEAAHHIGYPLMIRSAfaLGGLGSGICNDEA---QLLDMGGKAFSLSPQILVERSMLG 625
                 67899**************985224666777754432...233333445556666777776655 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 3.3e-06
   TIGR02068  203 tsiiaveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees..seviverfik 295 
                  ts+  ++ a+D++    +L++ Gv  P  + +  ++ea   aee+GyPv ++P     G  + +  ++ e++++  ++a+ +s  + ++v +f++
  MMETSP1174-20130828|9510_1 1075 TSAEMIDRAEDRQKFSAMLDKLGVKQPAWSELRDTDEALAFAEEVGYPVLVRPSYVLSGAAMNVA-HTPERLKAFLALAVGVSadKPIVVTKFLE 1168
                  5566677899*******************************************988777655543.34444444445666666447788888875 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05    0.0027       3      86 ..     211     295 ..     210     304 .. 0.77
   2 ?    0.5   0.0      0.43        97     170     183 ..     361     374 ..     330     379 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-05
   TIGR01855   3 vidygvgNlksvkkalervgaesevv....kdskelekadklvlP.GVGafkeamkklrelelellaekvvkkkkpvlgiClGmQllfe 86 
                 +i +++g  +++ ++l + gae +vv    k s+ ++++d l+l  G G  + +++++++l+    ++ ++ ++kp+ giClG Ql+  
  MMETSP1174-20130828|9510_1 211 IIAVDCGIKHNIIRMLVKRGAELTVVpwdyKFSEVMHEYDGLFLSnGPGDPSMCAETVEQLK----KTMAADETKPIFGICLGNQLMGL 295
                 677777777788888888888887763322446888999***99549999999*****9998....334788999***********964 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.43
   TIGR01855 170 ekdnivgvQFHPEk 183
                 +++ ++++QFHPE 
  MMETSP1174-20130828|9510_1 361 TSKPYFSAQFHPEA 374
                 4567899*****95 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00013     0.029      44     108 ..     228     294 ..     204     303 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
   TIGR01382  44 kkgakvtv...datlddvdaeeydalvipGGrapeylrldekvielvrefa.ekgKpvaaIChgpqlLi 108
                 k+ga++tv   d ++ +v  +eyd+l +  G +   +   e v +l + +a ++ Kp++ IC g+ql+ 
  MMETSP1174-20130828|9510_1 228 KRGAELTVvpwDYKFSEVM-HEYDGLFLSNGPGDPSMCA-ETVEQLKKTMAaDETKPIFGICLGNQLMG 294
                 4444444333388999996.58**********9777765.67999***9963678***********974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.39u 0.24s 00:00:01.63 Elapsed: 00:00:01.37
# Mc/sec: 1443.21
//
Query:       MMETSP1174-20130828|9515_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.0   2.4         13    3.5   0.1    4.5  5  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.075   3.1e+02       2      14 ..      16      27 ..      16      27 .. 0.85
   2 ?    0.2   0.0     0.035   1.4e+02       2      13 ..      40      50 ..      40      54 .. 0.78
   3 ?    1.2   0.0     0.017        68       2       9 ..      99     106 ..      99     108 .. 0.90
   4 ?   -3.1   0.0      0.38   1.6e+03       3       9 ..     134     140 ..     134     142 .. 0.83
   5 ?    3.5   0.1    0.0032        13       3      11 ..     170     178 ..     170     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.075
   TIGR02167  2 FsgCssLtsLDlS 14
                F++C +++  D+S
  MMETSP1174-20130828|9515_1 16 FADCPNIEG-DIS 27
                99**99987.776 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.035
   TIGR02167  2 FsgCssLtsLDl 13
                F+gC +++  D+
  MMETSP1174-20130828|9515_1 40 FNGCRKVQG-DI 50
                9****9986.66 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.017
   TIGR02167   2 FsgCssLt 9  
                 F +Cs L+
  MMETSP1174-20130828|9515_1  99 FKNCSELK 106
                 99****98 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 0.38
   TIGR02167   3 sgCssLt 9  
                 +gC+ +t
  MMETSP1174-20130828|9515_1 134 YGCKDIT 140
                 79*9887 PP

  == domain 5    score: 3.5 bits;  conditional E-value: 0.0032
   TIGR02167   3 sgCssLtsL 11 
                 ++C++L+sL
  MMETSP1174-20130828|9515_1 170 RDCTKLKSL 178
                 69******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 720.59
//
Query:       MMETSP1174-20130828|9520_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|9524_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 647.95
//
Query:       MMETSP1174-20130828|9523_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1781.85
//
Query:       MMETSP1174-20130828|9526_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 685.49
//
Query:       MMETSP1174-20130828|9529_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   17.1   0.1      0.023   11.9   0.1    2.5  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0012   16.1   0.0     0.0015   15.7   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0013   16.0   0.0      0.002   15.5   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0045   14.1   0.0     0.0073   13.4   0.0    1.3  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0061   14.1   0.0      0.012   13.2   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.37     3e+02     168     199 ..      28      58 ..      17      60 .. 0.76
   2 !   11.9   0.1   2.8e-05     0.023      56      95 ..      85     124 ..      77     219 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.37
   TIGR02021 168 iGelfprsdrataielhkekdleralgelgyk 199
                 iG + + ++  + i +h++++++  +g + ++
  MMETSP1174-20130828|9529_1  28 IGYRCATKS-HPIIRIHQDQNIKDCTGGIIWE 58 
                 666655554.589999******9999988775 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.8e-05
   TIGR02021  56 kkvlDAGCGtGllsielAkrGaivkavDiseklvelarkr 95 
                 k+vl+ G GtGll   lA++G +v   +  e+l +l  + 
  MMETSP1174-20130828|9529_1  85 KNVLEVGAGTGLLGLVLAHHGCNVILTEAPEALHNLETNV 124
                 789*********************9888777775544333 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-06    0.0015      49     151 ..      83     198 ..      43     215 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.9e-06
   TIGR01983  49 eglkvlDvGcGgGllseslarlgaevt......giDlseelievAklhakkdplk........kieyelksveelaeee...kesfDvvlamEvlEHvadleeilkecaellkpggilfl 151
                 e ++vl+vG+G Gll   la++g++v+      ++   e+++++A+  +     +        + + + +++e+ a++    ++ fD+++  +v+   a +e +l+++  l +++ +++l
  MMETSP1174-20130828|9529_1  83 EWKNVLEVGAGTGLLGLVLAHHGCNVIlteapeALHNLETNVSAATGDS----CTwegrdmprAAQLRWERAEDRAQAVvakNAPFDLIVGTDVIFAAALVEPLLQTLHGLSNEDTVVYL 198
                 5679*********************862222224444555566655433....3233334556566666666666554322256799999999988888888888877777777766666 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.4e-06     0.002      86     147 ..      81     139 ..      57     169 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.4e-06
   TIGR03534  86 kkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdl 147
                 ++e  +vl++g+G+G ++l la++   ++vi+++  +eAl+  + N+++ + +++++   d+
  MMETSP1174-20130828|9529_1  81 SAEWKNVLEVGAGTGLLGLVLAHH--GCNVILTEA-PEALHNLETNVSAATGDSCTWEGRDM 139
                 445679*****************9..99***9996.899*******9998877777777676 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.9e-06    0.0073      30     105 ..      84     165 ..      79     187 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.9e-06
   TIGR00755  30 sdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkle..leekleviegDalkldle....efakke.kvvsNlPYn 105
                  ++vlE+G+G+G L   l+++  +v+  E  + l ++L+++++  +    +   +D+ + +       +++++ +v  N P+ 
  MMETSP1174-20130828|9529_1  84 WKNVLEVGAGTGLLGLVLAHHGCNVILTEAPEAL-HNLETNVSaaTGDSCTWEGRDMPRAAQLrwerAEDRAQaVVAKNAPFD 165
                 579***********************99986555.566666664344444445556433322223232222233555577776 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.5e-05     0.012      19      58 ..      83     121 ..      71     130 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
   TIGR00537  19 knddvleiGaGtGlvairlkekgkkivatdinPfavkllk 58 
                 + ++vle+GaGtGl+   l++ g  ++ t+ +P a + l+
  MMETSP1174-20130828|9529_1  83 EWKNVLEVGAGTGLLGLVLAHHGCNVILTE-APEALHNLE 121
                 6689*************9999988777665.466665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 935.57
//
Query:       MMETSP1174-20130828|9527_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|9532_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-28   95.7   0.1    6.3e-28   95.4   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00055   16.9   0.4    0.00096   16.1   0.3    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0076   13.3   0.1       0.56    7.1   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.013   12.3   0.1      0.019   11.7   0.1    1.3  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.019   11.1   0.0      0.023   10.9   0.0    1.1  1  TIGR01393 lepA: GTP-binding protein LepA
      0.022   11.6   0.1      0.033   11.0   0.1    1.2  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   9.2e-31   6.3e-28       3     162 ..      18     177 ..      16     179 .. 0.96

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 9.2e-31
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqie.edGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 e+k+v++G+ +vGK++L  ++++ + + ++ +++++  + t++++ edG  +k++++DTaGqe+f+a+ ++y+r++++ + ++di+   ++++  + ++ +e+++ ++  +  + ++ nK Dl +   ++ + ++ fa + +++++ +sa++ +++ +lf+ v
  MMETSP1174-20130828|9532_1  18 EFKVVLLGDKGVGKTCLVLRFIEGT-FTQKQQSTIGAFFLTKKVQlEDGSMCKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDE-NSFSTMK-DWVQELRRNCQDRDLILAIACNKADLSStrVVSRERAESFASSIKAILMDTSAKENEGVNELFQKV 177
                 78***********************.**************99998679*9**************************************.*******.***********99****************9999999999******9*****************987 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.4e-06   0.00096       3     166 ..      21     187 ..      19     201 .. 0.51

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-06
   TIGR03594   3 vaivGrpNVGKStLfNrlvk.....krkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk..kp..vilvvNKvdnkkeeae...aaefyslGlge.vlaiSaehgrgikdLldeileelpeeeee 166
                 v+++G + VGK  L+ r+++     k+++ +     +T+  + ++ ++   ++++ DT+G e       ++++       + a v++ + d ++  t +D   ++ Lr++   ++  + +++NK+d  +++      ae ++  ++  ++  Sa++++g+++L+++++e++ e++ e
  MMETSP1174-20130828|9532_1  21 VVLLGDKGVGKTCLVLRFIEgtftqKQQSTI-GAFFLTKKVQLEDGSM--CKIQIWDTAGQERF-----RAMAPMYYRNAAAAIVCFDITDENSFSTMKDW--VQELRRNCqdRDliLAIACNKADLSSTRVVsreRAESFASSIKAiLMDTSAKENEGVNELFQKVTERVIESQGE 187
                 6666667777777766655311110222222.2233555555555555..35677777776222.....22333333333333344445666665555553..34444332123410445568888776554422244444455555245678888888888888888888776654 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00082      0.56     157     229 ..      20      92 ..      10     108 .. 0.78
   2 !    5.3   0.0    0.0029         2      75     151 ..     107     179 ..      78     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00082
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTT.ldlieipldkesvllDtpGiineeqianllskkd 229
                 +v+++G   VGK  l+ + ++ + ++k+  t+  f+ T  ++l +  +  + ++ Dt+G  +   +a +  ++ 
  MMETSP1174-20130828|9532_1  20 KVVLLGDKGVGKTCLVLRFIEGTFTQKQQSTIGAFFLTKkVQLEDGSM-CKIQIWDTAGQERFRAMAPMYYRNA 92 
                 8999*****************998888889999999885255555555.7788999999888777776655555 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0029
   TIGR03597  75 fdlegslikelkrfvkenkvllvv..NKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikk 151
                 f   + +++el+r +++ +++l +  NK dl  ++v +++ +e   +++k   ++      +sak+++g++el++++ +
  MMETSP1174-20130828|9532_1 107 FSTMKDWVQELRRNCQDRDLILAIacNKADLSSTRVVSRERAESFASSIKAILMD------TSAKENEGVNELFQKVTE 179
                 333456999**********9986444****9888887777777777666665555......899999999999998765 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05     0.019     273     350 ..      96     180 ..      79     181 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
   TIGR03156 273 lhvvDasdeeaeeqiea.veevLeelgaeeipvllvlNkidkleeeeleeleekk....eeavl..vsAkkgegleeLleaieea 350
                 +   D++de+  +++++ v+e+ ++ + ++    +++Nk+d+ +++ ++++++++     +a+l   sAk++eg++eL ++++e+
  MMETSP1174-20130828|9532_1  96 IVCFDITDENSFSTMKDwVQELRRNCQDRDLILAIACNKADLSSTRVVSRERAESfassIKAILmdTSAKENEGVNELFQKVTER 180
                 556788888877766543888888999999999999******9966666665555443334444227**************9987 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.4e-05     0.023      65     186 ..      63     188 ..      44     197 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.4e-05
   TIGR01393  65 kdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylal.....ekdleiiPvinkidlPsadvervkkeieeviG.ldaeeailvsaktGigieelleaivkkvpaPkgdk 186
                 +dg+  ++++ dt G   f          +  a++  d +      t+ +    l     ++dl +    nk dl s+ v  v +e +e      ++  +  sak+ +g++el++++ ++v + +g++
  MMETSP1174-20130828|9532_1  63 EDGSMCKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDENSFSTMKDWVQELrrncqDRDLILAIACNKADLSSTRV--VSRERAESFAsSIKAILMDTSAKENEGVNELFQKVTERVIESQGEE 188
                 5566666666666666666665555555666666666666666666666555544111115667677778*****99887..44444455540445556779*******************9998876 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.8e-05     0.033     258     327 ..     108     180 ..      92     182 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.8e-05
   TIGR02729 258 eviekeLkkyseeLaekpel..vvlnkidllee.eeleellkelkeelekkvlaisaltkegleellkkllel 327
                 +++++ +++ +++ ++++ +  +++nk+dl ++    +e +++++++++  ++ +sa ++eg++el +k++e 
  MMETSP1174-20130828|9532_1 108 STMKDWVQELRRNCQDRDLIlaIACNKADLSSTrVVSRERAESFASSIKAILMDTSAKENEGVNELFQKVTER 180
                 3444444444555566666512678*****9995556778888999999********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 709.81
//
Query:       MMETSP1174-20130828|9533_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 903.30
//
Query:       MMETSP1174-20130828|9531_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.49
# Mc/sec: 1872.09
//
Query:       MMETSP1174-20130828|9534_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-64  213.9   0.3    7.7e-64  213.3   0.2    1.3  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    1.9e-63  212.7   0.4    3.2e-63  211.9   0.1    1.5  2  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    5.6e-62  207.5   0.2      1e-61  206.7   0.1    1.3  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    8.5e-30  101.8   2.2    7.1e-28   95.5   0.2    2.3  2  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
    2.6e-19   67.3   0.1    2.1e-16   57.7   0.0    2.2  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II


Domain annotation for each model (and alignments):
>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.3   0.2   9.4e-67   7.7e-64       4     274 ..     514     785 ..     512     789 .] 0.94

  Alignments for each domain:
  == domain 1    score: 213.3 bits;  conditional E-value: 9.4e-67
   TIGR01858   4 tkellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyagteelvalvsaaakkyelplalhldhheslddikqkvaaG.vksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdeedalytdpdeakefveatGvdslavaiGtahGlykeapkldfdrlakirekv....dvplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfienpeandprkylksakeamkkvvekkia 274
                 t ell+ea+++  av afn++n+e   +v  +a +l +p il   p++f++ g+  l+++++ +a + ++p+a+ ldh +  d+i + +++G ++s+m+d+shl++e+n + +k     +h    +veaelG+l+G ed l+v e +a +tdpd  + f+  t vd+lav+iG  hG y++ p+ldf+rl++ire      dvplvlhGas+++ +l+ ++i  G+sk nv te++ a  da  +   +  +++d  + ++++  am   +++ + 
  MMETSP1174-20130828|9534_1 514 TVELLREARRSKRAVGAFNVYNMEGALAVARAAEQLGAPAILQVHPSSFSFGGV-TLLKMCRHIADNAKTPIAVQLDHSQRDDHISSALESGaLHSIMLDGSHLALEDNATWTKAFALKAHEAGYAVEAELGKLAGEEDGLAVLEVEARMTDPDVVASFLTETKVDTLAVTIGNVHGKYAKPPNLDFERLKRIREIAesvgDVPLVLHGASGLSPQLIDKAISHGVSKFNVNTEVRAAARDAAHK---AAMRGDDVLDTMQATTTAMTSRISHFLR 785
                 5689***********************************************887.689********************************99679***************************************************************************************************86433348***********************************99998765...5667889999999999999988887665 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       2.9   2.4e+03     203     227 ..     362     392 ..     350     396 .. 0.63
   2 !  211.9   0.1   3.9e-66   3.2e-63       5     255 ..     515     769 ..     512     788 .. 0.92

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2.9
   TIGR01859 203 lvlhGasGipeeq......lkkaiklgiakv 227
                 +vlh + G+ +++      + ++++ +++kv
  MMETSP1174-20130828|9534_1 362 VVLHTSRGVVQDDgaggllIGQSVSDALCKV 392
                 7888888888775333333555555555555 PP

  == domain 2    score: 211.9 bits;  conditional E-value: 3.9e-66
   TIGR01859   5 kellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlggikvvvalvkalieklsivPvalhLDhGssyescikaikaG.fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGiedd..vvekeaeladideakklvketgvDaLaiaiGtshGkykgepkldferlkeikklln....lPlvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvleekkdeydpR 255
                  ell++a++ k avgafn+ n+e + a+ +aae+  +P i+qv   +  + g   ++ ++ ++++++++ +P+a+ LDh +  +++ +a+++G   s+m+D+shl+le+n + tk     ah++g +veaelGkl+G+ed+  v e ea+++d+d + ++  et+vD+La++iG++hGky + p+ldferlk+i+++ +    +PlvlhGasG++ + + kai+ g++k n++t++r a  +a +k +    d  d  
  MMETSP1174-20130828|9534_1 515 VELLREARRSKRAVGAFNVYNMEGALAVARAAEQLGAPAILQVHPSSFSFGG--VTLLKMCRHIADNAK-TPIAVQLDHSQRDDHISSALESGaLHSIMLDGSHLALEDNATWTKAFALKAHEAGYAVEAELGKLAGEEDGlaVLEVEARMTDPDVVASFLTETKVDTLAVTIGNVHGKYAKPPNLDFERLKRIREIAEsvgdVPLVLHGASGLSPQLIDKAISHGVSKFNVNTEVRAAARDAAHKAAMRGDDVLDTM 769
                 589**********************************************999..78999******9999.9*********************9568*********************************************99999********************************************99987765333369*************************************99999988887777654 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.1   1.2e-64     1e-61       8     279 ..     516     782 ..     512     788 .. 0.92

  Alignments for each domain:
  == domain 1    score: 206.7 bits;  conditional E-value: 1.2e-64
   TIGR00167   8 ellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaGleaiaalvkalveaekytvPvvlHlDHgaseesiaeavkag.fsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpeeakelvkksqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs....lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkdeydprkylkeaekamkevvke 279
                 ell++a++ + a++a+Nv n+e + av  aae+  +P i+q+  + +++ +   ++ +++   ++++  + P+++ lDH +  ++i++a+++g + S+M+D+S+ ++e+N + tk +   ah++g  vEaElG l geedg+   +++ +a +tdp++++ + ++++vd+lA++iGnvHG Y+k p+ L+ferl++i+++ +    +plVlHG+sg++ + i kai+ Gv K N++T+++ A+ +a ++++   +d  d    ++++++am+ ++++
  MMETSP1174-20130828|9534_1 516 ELLREARRSKRAVGAFNVYNMEGALAVARAAEQLGAPAILQVHPSSFSFGG--VTLLKMCRHIADNA--KTPIAVQLDHSQRDDHISSALESGaLHSIMLDGSHLALEDNATWTKAFALKAHEAGYAVEAELGKLAGEEDGLA--VLEVEARMTDPDVVASFLTETKVDTLAVTIGNVHGKYAKPPN-LDFERLKRIREIAEsvgdVPLVLHGASGLSPQLIDKAISHGVSKFNVNTEVRAAARDAAHKAAMRGDDVLD---TMQATTTAMTSRISH 782
                 7999*********************************************88..67778887777777..69********************98689*********************************************99..9************************************99999.***********999999*****************************************9998888777755...466777777776665 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.2   8.6e-31   7.1e-28       7     236 ..     517     726 ..     513     732 .. 0.89
   2 !    6.6   0.1   0.00091      0.75     261     299 ..     730     768 ..     724     781 .. 0.82

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 8.6e-31
   TIGR01521   7 lldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsyagevllrklvlaaveeypdipvvlhqdhgnspatclsaiqlg.ftsvmmdgslkedaktpadydynvsvtaevvklahavgasvegelgclgsletgkgeaedghgfegaldrsqlltdpeeaaefvkktkvdalavaigtshgaykftrkptgevlaidrieeiherlpdthlvmhgsssvp 236
                 ll  a      v afnv n+e  la+ +aa++  +p ilq+   + s+ g +ll+ +    +    + p+++  dh +  +   sa++ g + s+m+dgs           + n + t+  +  ah  g +ve elg l       +++edg     +l+    +tdp+  a+f+++tkvd+lav+ig  hg  k++++p  +   ++ri+ei e + d  lv+hg+s + 
  MMETSP1174-20130828|9534_1 517 LLREARRSKRAVGAFNVYNMEGALAVARAAEQLGAPAILQVHPSSFSFGGVTLLK-MCRH-IADNAKTPIAVQLDHSQRDDHISSALESGaLHSIMLDGSHL-------ALEDNATWTKAFALKAHEAGYAVEAELGKL-------AGEEDGLA---VLEVEARMTDPDVVASFLTETKVDTLAVTIGNVHG--KYAKPPNLDFERLKRIREIAESVGDVPLVLHGASGLS 726
                 666777778899************************************9988875.5444.5556899********************99568******964.......47889999999999*************988.......57889875...6888899****************************..568******************************9864 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00091
   TIGR01521 261 ivkgikfgvrkvnidtdlrlaataalrrvaakdpsefdp 299
                 i k i +gv k n++t++r aa  a  ++a +  + +d 
  MMETSP1174-20130828|9534_1 730 IDKAISHGVSKFNVNTEVRAAARDAAHKAAMRGDDVLDT 768
                 8899******************99999998877766665 PP

>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   2.6e-19   2.1e-16      17     298 ..     516     755 ..     510     774 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 2.6e-19
   TIGR01520  17 klfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelskispkfsiaaafGnvhGvy.kpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegi 298
                 +l++ a++ k a+ a nv   e + a+ +aa++ ++p+ilq+  ++ +f                   +++ +  r+ia++   p+++  dh  ++  +++ + le ++          + s mld+s  ++e+n + +k +  ++ ++   +e e+G   GeedG++  e+  e+  t+P+ v    +e +      ++a + GnvhG y kp   +l  + l+  +e++++  +++      +v+hG sG + + i++a+s+Gv k nv+t+++ aa  + 
  MMETSP1174-20130828|9534_1 516 ELLREARRSKRAVGAFNVYNMEGALAVARAAEQLGAPAILQVHPSSFSFG-----------------GVTLLKMCRHIADNAKTPIAVQLDHSQRD--DHISSALESGA----------LHSIMLDGSHLALEDNATWTKAFALKAHEAGYAVEAELGKLAGEEDGLAVLEV--EARMTDPDVVASFLTETKV----DTLAVTIGNVHGKYaKPP--NLDFERLKRIREIAESVGDVP------LVLHGASGLSPQLIDKAISHGVSKFNVNTEVRAAARDAA 755
                 78889999999999999999999999999999999999999988776663.................45556668889999999999999999887..45777776665..........5799*********************************************9988..8889***999888877654....479***********3344..455567777777766655555......9*****************************998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.52
# Mc/sec: 2002.68
//
Query:       MMETSP1174-20130828|9535_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|9530_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 746.25
//
Query:       MMETSP1174-20130828|9537_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 283.29
//
Query:       MMETSP1174-20130828|9541_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   39.7   0.0    1.5e-10   39.1   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    6.5e-10   36.5   0.0    9.8e-10   35.9   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    6.9e-09   33.2   0.0    9.7e-09   32.7   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.4e-07   27.8   0.0    5.4e-07   27.1   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      2e-06   25.2   0.0    2.9e-06   24.7   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    1.2e-05   22.6   0.0    2.7e-05   21.5   0.0    1.5  2  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    3.7e-05   21.3   0.0    6.4e-05   20.6   0.0    1.3  1  TIGR00740 TIGR00740: putative methyltransferase
      6e-05   20.5   0.0    0.00011   19.6   0.0    1.4  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    0.00052   17.0   0.0    0.00084   16.3   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0084   14.2   0.0      0.015   13.4   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   3.6e-13   1.5e-10      21     135 ..     114     238 ..     107     242 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 3.6e-13
   TIGR02072  21 kkLlellkekr...kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekksfDlivSnlalQWlddls..evlaelarvlkpgGllafstf 135
                 + L  ll+ +     +++a+vLd++cG G++   l+ r++ ++++ lD s+   ++ k +l+     +v+f++g++ +++  ++ +D i+ +  lQ +d  +  ++l+ la +lkp+Gll++ ++
  MMETSP1174-20130828|9541_1 114 NALATLLESQLghaRMNRANVLDLACGAGLYGFTLALRNDGVNVTVLDQSNVIAKTRKWALEfgvasRVKFVEGSVFEMEPPENAYDAIIVSHFLQNFDYATnvKILKTLAPSLKPNGLLVVHDY 238
                 5677777776677788999***************************************9999***********************************997762257**************98665 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   2.4e-12   9.8e-10      39     145 ..     130     239 ..     118     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 2.4e-12
   TIGR01934  39 keekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakek.eeanvefieadaeeLpfednsfdavtiafGlRNvtdie..kaLkelaRVlkpggrlvilefs 145
                 + ++vlD+a+G+G   ++la +    +vt++D s+ + ++ k  ++     ++v+f+e+++ e+  ++n +da+ +++ l N+   +  k Lk la  lkp+g lv+ +  
  MMETSP1174-20130828|9541_1 130 NRANVLDLACGAGLYGFTLALRNDgVNVTVLDQSNVIAKTRKWALE-FgVASRVKFVEGSVFEMEPPENAYDAIIVSHFLQNFDYATnvKILKTLAPSLKPNGLLVVHDYV 239
                 6789***************988888*******99876666555555.45999*******************************88762267***************98875 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.4e-11   9.7e-09      45     151 ..     126     235 ..     105     245 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.4e-11
   TIGR01983  45 ekkleglkvlDvGcGgGllsesla..rlgaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHvadle..eilkecaellkpggilfl 151
                 + +++  +vlD+ cG+Gl   +la  + g++vt +D+s+ + ++ k  a + +++ ++++   sv e++   ++++D+++++  l   ++ +  +ilk++a  lkp+g l++
  MMETSP1174-20130828|9541_1 126 HARMNRANVLDLACGAGLYGFTLAlrNDGVNVTVLDQSNVIAKTRKW-ALEFGVAsRVKFVEGSVFEMEPP-ENAYDAIIVSHFLQNFDYATnvKILKTLAPSLKPNGLLVV 235
                 3678899***********8877773267899*****98766555555.55555555************777.788***********99987623689************997 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.3e-09   5.4e-07      75     161 ..     118     203 ..     107     205 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.3e-09
   TIGR03534  75 lLveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllealeekgkfdliv 161
                 +L+e+ l +++ ++ ++vlDl +G G  + +la + + ++v+  D s+  ++ +rk a + g+++ v+f++++++e   +++ +d i+
  MMETSP1174-20130828|9541_1 118 TLLESQLGHARMNR-ANVLDLACGAGLYGFTLALRNDGVNVTVLDQSNV-IAKTRKWALEFGVASrVKFVEGSVFEMEPPENAYDAII 203
                 57777888887777.8*****************************9875.7778888999999989*********9888999999987 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.1e-09   2.9e-06      48     145 ..     124     225 ..     107     235 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7.1e-09
   TIGR02021  48 lpkdslkGkkvlDAGCGtGllsielA..krGaivkavDiseklvelarkraekedeaenveFevnd...leslegkfDavvalDvlihYpaediakalerlas 145
                 l++  ++  +vlD  CG+Gl   +lA  ++G +v+  D s+ +++++rk a +  +a +v+F+ ++   +e  e+ +Da++    l  +  +   k+l++la 
  MMETSP1174-20130828|9541_1 124 LGHARMNRANVLDLACGAGLYGFTLAlrNDGVNVTVLDQSN-VIAKTRKWALEFGVASRVKFVEGSvfeMEPPENAYDAIIVSHFLQNFDYATNVKILKTLAP 225
                 5555677789**********777766337799999999885.899*****************97761116666699****99999988888888888888875 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.5e-08   2.7e-05      96     195 ..     107     204 ..      94     225 .. 0.86
   2 ?   -2.3   0.0       1.1   4.6e+02     232     249 ..     218     235 ..     213     236 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.5e-08
   TIGR03533  96 ervlvPRspiaelieeefapllekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfeale.gkkydlivs 195
                 e  + P   +a l+e+++       + ++vldl +G+G  + ++a + +  +v + D s+  ++ +++   e++++ rv+ +++ +fe  + ++ yd i+ 
  MMETSP1174-20130828|9541_1 107 EASIAPANALATLLESQLGHAR--MNRANVLDLACGAGLYGFTLALRNDGVNVTVLDQSN-VIAKTRKWALEFGVASRVKFVEGSVFEMEPpENAYDAIIV 204
                 567899999********98866..67899****************************886.67778888899***************97654999**9985 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
   TIGR03533 232 rilaeaaeyLeeeGvLvv 249
                 +il++ a  L+++G+Lvv
  MMETSP1174-20130828|9541_1 218 KILKTLAPSLKPNGLLVV 235
                 79999999********98 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.6e-07   6.4e-05      53     163 ..     130     239 ..     101     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.6e-07
   TIGR00740  53 pkslvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkaykaaipvevlcndirevei.kea.savvlnfvlqflepeereallkkiyeglnlnGvlvlseki 163
                   ++v dl c  G + +++   +++d v++  +d s+ ++ ++r+   ++  a  v+++++ + e+e  ++a  a+++   lq  +      +lk +  +l++nG lv+ + +
  MMETSP1174-20130828|9541_1 130 NRANVLDLACGAGLYGFTL--ALRNDGVNVTVLDQSN-VIAKTRKWALEFGVASRVKFVEGSVFEMEPpENAyDAIIVSHFLQNFDYATNVKILKTLAPSLKPNGLLVVHDYV 239
                 6789******999654444..3456788999999986.67899999999*****************9735553578899999999999999*****************98765 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.8e-07   0.00011      47     150 ..     132     236 ..     123     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.8e-07
   TIGR02752  47 kkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdy...lqvlkemarvvkpggkvvcl 150
                 +++ld+ cg++ +  +la    +  +v+ ld s+ + +  k  ++    ++v++v g  +e+  ++n++d + +   l+n  dy   +++lk +a  +kp g +v  
  MMETSP1174-20130828|9541_1 132 ANVLDLACGAGLYGFTLALR-NDGVNVTVLDQSNVIAKTRKWALEFGVASRVKFVEGSVFEMEPPENAYDAIIVSHFLQNF-DYatnVKILKTLAPSLKPNGLLVVH 236
                 689*********99999754.34458999***998888888888888999*****************************97.452226789999999*****99875 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06   0.00084     116     186 ..     132     202 ..     106     206 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.1e-06
   TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlleslakq.kidli 186
                  ++lDl +G G  + +lAl +  ++v+  D s +++a  ++ a ++++  rv+++ + ++e  + +  +d i
  MMETSP1174-20130828|9541_1 132 ANVLDLACGAGLYGFTLALRNDGVNVTVLDQS-NVIAKTRKWALEFGVASRVKFVEGSVFEMEPPEnAYDAI 202
                 679***************************98.689999*********************976655466654 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.7e-05     0.015      17      96 ..     129     206 ..     119     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.7e-05
   TIGR02469  17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieivegdapkaeedsleeadavfvgG 96 
                 ++ ++ +lD  +G+G  +  +a +   ++v+ ++++ +++  +++ + +f ++s+++ veg++ ++e+   ++ da++v+ 
  MMETSP1174-20130828|9541_1 129 MN-RANVLDLACGAGLYGFTLALRNDGVNVTVLDQS-NVIAKTRKWALEFgVASRVKFVEGSVFEMEPP-ENAYDAIIVSH 206
                 44.5689**********************9999986.577788888999978899*******9988888.799****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|9536_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.70
# Mc/sec: 1593.30
//
Query:       MMETSP1174-20130828|9543_1  [L=1069]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    6.8  11.0        5.7    4.9   0.2    4.3  4  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2    0.0014       5.7       8      19 ..      25      36 ..      22      38 .. 0.88
   2 ?    4.7   0.1    0.0015       6.3       4      19 ..      48      67 ..      46      71 .. 0.91
   3 ?   -3.3   0.1      0.53   2.2e+03      13      24 ..     113     123 ..     113     125 .. 0.68
   4 ?    1.8   0.1     0.013        55       9      19 ..     137     146 ..     136     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0014
   TIGR01376  8 snNsakgsGGAI 19
                +nNsa  +GGA 
  MMETSP1174-20130828|9543_1 25 ENNSALQGGGAF 36
                69********97 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0015
   TIGR01376  4 tilFsnNsakg....sGGAI 19
                +i+F  N+a g    +GGAI
  MMETSP1174-20130828|9543_1 48 NITFRDNTAHGtsiyHGGAI 67
                79*******999999****9 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.53
   TIGR01376  13 kgsGGAIyatgk 24 
                 +++GGA   + +
  MMETSP1174-20130828|9543_1 113 TTYGGAFGFK-D 123
                 579***7555.5 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.013
   TIGR01376   9 nNsakgsGGAI 19 
                 nN+a+ +GGA 
  MMETSP1174-20130828|9543_1 137 NNTAA-FGGAV 146
                 8****.***95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.83
# Mc/sec: 1699.96
//
Query:       MMETSP1174-20130828|9545_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 939.92
//
Query:       MMETSP1174-20130828|9544_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.5   0.0     0.0047   13.9   0.0    1.1  1  TIGR02371 ala_DH_arch: alanine dehydrogenase
      0.007   13.5   0.0      0.011   12.9   0.0    1.2  1  TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR02371  ala_DH_arch: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.3e-06    0.0047     130     231 ..      19     119 ..      14     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-06
   TIGR02371 130 vlGliGaGrqaytqlealsrvfdleevkvysrtkeaaekfvkeasdyevpvsaaeepaekvsdcdilvtttpsrkpvvkaew.veeGthinaiGadapGkqel 231
                 + G++G+G+ a      l  + + e v v sr +e a++f  +    +   +a+ e+  + +++d++  +tps + v   e  ++ G h+    + apG  e 
  MMETSP1174-20130828|9544_1  19 RWGILGTGTIASDFTTVLNSLPNTEVVAVGSRSQEGADRFGDKFGITV--RHASYEALAADNRLDVVYVATPSLRHVGDCELcLQAGRHVLCEKSMAPGAPEA 119
                 579*************************************98766444..567888999999***************99996368899998888888887665 PP

>> TIGR03215  ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   5.4e-06     0.011       3      91 ..      19     106 ..      17     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.4e-06
   TIGR03215   3 kvaiiGsGnigtdllikllrsevlelallvGidpesdGlar.arelgvetsaeGvdalleeedidivfdatsakahaenaklleelgkiv 91 
                 + +i+G+G i++d+   l    + e+ + vG  ++ +G  r   ++g+++ +   +al +++ +d+v+ at +  h+ + +l  ++g++v
  MMETSP1174-20130828|9544_1  19 RWGILGTGTIASDFTTVLNSLPNTEV-VAVGSRSQ-EGADRfGDKFGITVRHASYEALAADNRLDVVYVATPSLRHVGDCELCLQAGRHV 106
                 678**********9876655555554.55777655.566552799*******************************99998888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 937.39
//
Query:       MMETSP1174-20130828|9547_1  [L=1143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-198  656.6   0.0   7.6e-198  656.3   0.0    1.1  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
    5.2e-65  217.6   1.5      6e-47  157.8   0.0    6.1  6  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  656.3   0.0  3.7e-201  7.6e-198       1     597 [.     531    1142 ..     531    1143 .] 0.93

  Alignments for each domain:
  == domain 1    score: 656.3 bits;  conditional E-value: 3.7e-201
   TIGR03670    1 vylnGkliGtvedpeelvekvrelrregklseevnvaykeetnevyintdaGrirrPllvvenGkpklteehveklkkgeltfedlvkeGvieyldaeeeenayialseeelteehthleidpsailGivaslipyaehnssprntmeaamakqslGlyaanyklrldtrahllhypqvplvktrvlelieyderPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyeaeerrypgGqedkfeiP...ekevrgyrseea..ykkldedGivapeaevkgkdvligktsPPrfleeleelg.....laaekrrdssvtvrsgekGivdkvllt..eseegsklvkvrvrderipelGdkfasrhGqkGviGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaalegrrvdatafeee.....keeelrkelkklGfkedgkevlydgitGekleaeifiGvvyyqklhhlvadklharsrGpvqvltrqPteGrareGGlrfGemerdvlvghGaalllkerlldesdkvvvlvcekcGeiaildkkkkklvcpvcgekekiskvevsyafkllldelkslgiaprlkled 597 
                  v++nG ++G + +p+++v+ +r lrr+g + e v+v++++  + +y+ td Gr+ rPllv  +Gkp+lt+ h+ +l  g  +++dl+keG++ey+d +ee+n ++alse+elt+ehthleidp +++G+v++lip+++hn+sprnt+  am kq++G  a+n+   + +  + l yp +p+vktrvl+l+++d+ P gqn+v+av+sy+Gy+ieda++lnkasi+rg++r+  +r ++++ +ryp G +d  e P   e+  rg+  +++  ++kld+dG+  + ++++ +++++ k  P     +l+  +     + ++k    s    ++    vdkvl+t  e+ +++ l+kv +r+ r pe+GdkfasrhGqkGv Gliv+qe++Pf+e Gi+Pdli+nPh++Psrmtvg+++e + gk++ ++g++  ataf e+     k+ e  +el ++Gf+  +k++l +gitGe l+a if+G v+yqkl+h+v dk+har+rGp  vltrqPteGr+r+GGlr+Gemerd+lvg+Gaa l+ erl+ +sd+ ++ vc+kc  i++l +  k + c  c   e+++ ++++ya kll +el+s+ i+p+l+le+
  MMETSP1174-20130828|9547_1  531 VFVNGLIVGAHSQPKRFVKYFRTLRRKGLVGEFVSVYLHSVHHAIYVATDGGRVCRPLLVCTKGKPRLTQVHMSQLGLGLRSLTDLMKEGIVEYMDVNEENNCMVALSEKELTPEHTHLEIDPLTLMGVVSGLIPFPHHNQSPRNTYTCAMGKQAMGCVAMNQYEIMSSLIYSLVYPMKPMVKTRVLDLVNFDKVPGGQNAVLAVMSYSGYDIEDAIILNKASIDRGFGRCLIMRKHQTSLKRYPNGSQDINEGPppvEAFARGAENAKYarFSKLDKDGMCLVGERLDPGQIMVNKRIPTNVSMDLSVASatsgtTGTHKPAPLSYKAPHDHFVHVDKVLVTrnETDHAHLLIKVLLRQCRRPEVGDKFASRHGQKGVCGLIVNQENLPFNETGICPDLIMNPHGFPSRMTVGKIIELVVGKAGVMNGHQGYATAFGEDfgnadKVVEASQELVRHGFSYVAKDMLTSGITGEPLSAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGAAALISERLMTSSDAFTAHVCKKCNLIGYLGE--KGMWCQNCRSAENMTDMKLPYACKLLFQELQSMNITPKLHLEE 1142
                  8*****************************************************************************************************************************************************************9999**************************************************************************************99944444567776665433789*************************9987765544311111233333445666677788889*****93345567789************************************************************************************7642211146788999****************************************************************************************************************9976..5789*************************************97 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00018      0.37      80     133 ..      86     140 ..      15     144 .. 0.73
   2 ?   -0.1   0.1     0.014        28     127     217 ..     158     248 ..     155     273 .. 0.72
   3 !   19.4   0.0   1.8e-08   3.7e-05     382     534 ..     329     494 ..     323     497 .. 0.68
   4 !    4.6   0.0   0.00052       1.1     604     648 ..     645     689 ..     615     707 .. 0.85
   5 !   21.0   0.0   5.8e-09   1.2e-05     752     846 ..     728     832 ..     722     838 .. 0.78
   6 !  157.8   0.0   2.9e-50     6e-47     999    1199 ..     883    1085 ..     869    1137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00018
   TIGR02013  80 e.....eckergltysvplkvklrlilkeeegvkeikeqdvylgeiPlmtdkgtfiinG 133
                        c  r++ty +p+ v+++++  +    + +  +++ +g+iP+m  +   ++ G
  MMETSP1174-20130828|9547_1  86 AvitpfQCRLRDCTYYAPIVVNVKFTRGH----QIVSMNNIPIGRIPIMLRSCKCVLAG 140
                 1334449******************9954....678999**********9888877766 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.014
   TIGR02013 127 gtfiinGaervvvsqlhrsPg.vvfseekdtskkgkklfsakiiPsrGsWlefetDkkdllyvridrkr.kllvtvllralgyekdedilelf 217
                 g f++ G+e+vv  q + s   v+ +++  + +   +  +++ i  +     f       +y + +     +++ ++++a+g e+d++i++l 
  MMETSP1174-20130828|9547_1 158 GYFVVKGVEKVVLMQEQLSKNrVIIETDS-KGNVAAS-ITSSTIERKSRCSIFVKKGTGRVYLKHNTLGdDVPIAIVFKAMGVEADQEIVQLI 248
                 67**********98877776524555444.5554444.4555566665555666667778888887754389999999999999999998765 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 1.8e-08
   TIGR02013 382 ikyliklkngkaevDDiDhlgnrrvrsvGellenqlrvglarmervvr..........erlsvkdtdtltPqdlinakpvvaaikeffgssqLsqf.mDqtnPlaelthkrrlsaLGpGGLtreraGfe..v.....rDvhpthYGriCPietPeGpniGLinslstyakv 534
                 i+ ++  +++++  DD D +gn+r+   G ll+  ++  + +++  ++          +r +v d+ +   qd+i    + a+ +   g+  L +f mD++     l +   +sa+G   +tr  + fe  v     r + p+ +G +CP +tPeG+  GL++ l+  ++v
  MMETSP1174-20130828|9547_1 329 IRRVLAANADRTLLDDKDYVGNKRLELAGQLLALLFEDKFKQLNSEIKrladrelskqNRTAVFDVSKHIRQDVITQGFIHAIST---GNWVLKRFrMDRAGVTQVLSRLSYMSAIGM--MTRITSQFEktVkvagpRALQPSQWGMLCPADTPEGETCGLVKNLALLCHV 494
                 5566777888999******************998888777777766652221111111333444444444555554444444322...444688887888877777777777888865..6666666663313355599**************************987766 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.00052
   TIGR02013 604 evdymdvspkqvvsvaaaliPfLehDDanraLmGsnmqrqavPll 648
                 e +++++ p  +++v+++liPf  h+ + r      m +qa+  +
  MMETSP1174-20130828|9547_1 645 EHTHLEIDPLTLMGVVSGLIPFPHHNQSPRNTYTCAMGKQAMGCV 689
                 447899**********************************98766 PP

  == domain 5    score: 21.0 bits;  conditional E-value: 5.8e-09
   TIGR02013 752 GknvlvafmpWeGynyeDailiserlvkdDvftsihieefeve.......ardtklGe...eeitrdipnvseealrnLdeeGivriGaevkagdiLvGkvtPkg 846
                 G+n ++a m+++Gy+ eDai++++  +   +   + +++++++       ++d+  G+   e + r   n +    ++Ld++G+  +G ++++g+i+v k  P  
  MMETSP1174-20130828|9547_1 728 GQNAVLAVMSYSGYDIEDAIILNKASIDRGFGRCLIMRKHQTSlkrypngSQDINEGPppvEAFARGAENAKYARFSKLDKDGMCLVGERLDPGQIMVNKRIPTN 832
                 9*********************99877666555555555554411111116677777545578889999999999*************************98876 PP

  == domain 6    score: 157.8 bits;  conditional E-value: 2.9e-50
   TIGR02013  999 lvkvyvaqkrkiqvGDkmaGrhGnkGvvskilpieDmPfledGtpvdivLnPLgvPsrmniGqvlelhlglaakklgekgvkiat..pvfdgaseeevkellekaglprdgkvklyDGrtGekfdekvtvGviYmlkLahlvddklharsiGpYslvtqqPlGGkaqfGGqrfGemevWaLeayGaayiLqelLtvksDDvaG 1199
                  l+kv++ q r+ +vGDk+a rhG kGv + i+ +e++Pf e G   d+++nP g Psrm +G+++el +g a+   g++g  +a   +  ++ +  e ++ l ++g++  +k +l  G tGe+++  + +G ++  kL+h+v dk+har+ Gp +++t+qP  G+++ GG r+Geme   L  yGaa ++ e L   sD  + 
  MMETSP1174-20130828|9547_1  883 LIKVLLRQCRRPEVGDKFASRHGQKGVCGLIVNQENLPFNETGICPDLIMNPHGFPSRMTVGKIIELVVGKAGVMNGHQGYATAFgeDFGNADKVVEASQELVRHGFSYVAKDMLTSGITGEPLSAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGAAALISERLMTSSDAFTA 1085
                  79************************************************************************99999987765214445556667788888999****************************************************************************************999997664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.19s 00:00:01.03 Elapsed: 00:00:00.71
# Mc/sec: 2124.84
//
Query:       MMETSP1174-20130828|9548_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1679.45
//
Query:       MMETSP1174-20130828|9549_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1561.87
//
Query:       MMETSP1174-20130828|9550_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 796.19
//
Query:       MMETSP1174-20130828|9554_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   16.4   0.0    0.00063   15.7   0.0    1.5  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-07   0.00063     120     160 ..       5      47 ..       1      62 [. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-07
   TIGR00870 120 andestseftkgitalilAihkqnyeivklLl.ekgasve.ar 160
                  n ++  e  +g t+l +A+h+ n+ +v+ L+ e  a+v+ ar
  MMETSP1174-20130828|9554_1   5 KNFNANVELKNGWTPLYIAAHTGNLDMVRYLVgEAHADVNqAR 47 
                 55566778999*********************55678888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|9553_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.72
# Mc/sec: 749.77
//
Query:       MMETSP1174-20130828|9551_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1299.81
//
Query:       MMETSP1174-20130828|9555_1  [L=1270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.15s 00:00:00.87 Elapsed: 00:00:00.80
# Mc/sec: 2095.33
//
Query:       MMETSP1174-20130828|9556_1  [L=969]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (969 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.51
# Mc/sec: 2507.79
//
Query:       MMETSP1174-20130828|9557_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-08   29.6   1.1    5.3e-05   19.1   0.3    3.2  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.7e-08   30.7  13.2     0.0027   15.3   0.4    5.0  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00027   18.8   0.0       0.39    8.8   0.0    4.8  6  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.1     0.004       5.5     191     268 ..      48     126 ..      43     154 .. 0.74
   2 !   19.1   0.3   3.9e-08   5.3e-05     537     705 ..     217     381 ..     123     392 .. 0.82
   3 !    4.5   0.0   0.00097       1.3      54     140 ..     451     536 ..     440     553 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.004
   TIGR02917 191 knvdAllLkgdlllssgnieeAlaayrkaielkpnaia.allalatilleegefeeAekkadallkkapnspkaaylkA 268
                 +n + l+  g  ++ +g++e Al+ay+ +  +  + ++ ++l  a  l + + + +A +ka+  ++   +s+k +  kA
  MMETSP1174-20130828|9557_1  48 DNKETLMWIGYCAFHLGKYERALEAYQSIETHSTEVPNeVHLYMACCLYYMQMYPQAGEKATHYSELEESSLKENMEKA 126
                 6677777778888889999999999999888887765426888888888888888888888887777777776666555 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 3.9e-08
   TIGR02917 537 laLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalg 705
                 l La++   + + +ea+ +++++  ++ ++l++ +  a  y +    + +l+il  +++++p s+ +++l++ +     + ++a + +k +l  +++++++  l+ +   v+++ ++Al++l + +e  p+   a+l l+  +l ++ +++A++l+k++e   p++  +
  MMETSP1174-20130828|9557_1 217 LSLAAIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAHPGSAIAVSLKACNHFRLYNGRAAEAELK-VLTDEGYNPESNDLIRHNMVVFSQGEGALQVLPQLVEFIPE---ARLNLVIYYLRNGGVQDAYELIKDIEPSTPQQYIL 381
                 6799999999999*******************************************************************999999985.667889********************************999...999999999****************9888776554 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.00097
   TIGR02917  54 ndaeaRflLgkiyleqGdaaaAekeLrkAlslgyskeqvlpl.LarayllqgkfqkvldelekksslddeeaaellalrglAaLglge 140
                 nd + ++  g  + ++G+ +aAe  L   ++ +y++e   +  Lar y++ g++ ++ ++  k +   ++e+ +ll+l ++   + g+
  MMETSP1174-20130828|9557_1 451 NDDDFNWNYGISLAQTGNFKAAEEALLLIQNEKYKAEPCFISwLARCYISNGNPRNAWELYLKMD--TSNESFNLLQLIANDCYRMGQ 536
                 56677888888889999999999999999999999998877549999999999999999885555..666777777776665555555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4     2e-06    0.0027      56     108 ..      54     107 ..      45     130 .. 0.79
   2 !   11.9   0.3   2.2e-05     0.031      56     114 ..     217     275 ..     213     294 .. 0.91
   3 ?    2.4   0.0     0.018        25      72     115 ..     362     405 ..     358     414 .. 0.90
   4 ?    3.1   0.2     0.011        15      50     107 ..     451     509 ..     425     534 .. 0.64
   5 ?    1.8   0.0     0.029        39      15      50 ..     518     553 ..     512     566 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-06
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddp.rpvyhaaecllalgekeeAlka 108
                 + ++ c   l++ye+A++aY+ + + + + p +++++ a cl+ ++ + +A + 
  MMETSP1174-20130828|9557_1  54 MWIGYCAFHLGKYERALEAYQSIETHSTEVPnEVHLYMACCLYYMQMYPQAGEK 107
                 66899**********************98884689*************999775 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.2e-05
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                 l+Laa +   ++++eA ++Y++ +  ++dd +  ++ a c+++l+ +  +l+ L++ ++
  MMETSP1174-20130828|9557_1 217 LSLAAIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQ 275
                 79******************************************999998888877655 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.018
   TIGR02552  72 iaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                 ++aY+l+  +++++p+ +   +++   +g+   +++ +k+a + 
  MMETSP1174-20130828|9557_1 362 QDAYELIKDIEPSTPQQYILKGVVNACVGQDIGSREHIKMAQQF 405
                 589****************************9999999999876 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.011
   TIGR02552  50 teakywlgLaaclqalkeyeeAiaaYalaaald.lddprpvyhaaecllalgekeeAlk 107
                 ++ ++    + +l ++++++ A +a  l+   + + +p ++  +a c++  g++++A +
  MMETSP1174-20130828|9557_1 451 NDDDFNWNYGISLAQTGNFKAAEEALLLIQNEKyKAEPCFISWLARCYISNGNPRNAWE 509
                 45555555555555666666666666666555435556666666777777776666643 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.029
   TIGR02552  15 eeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpt 50 
                 +e  + +  +A   y  g++  A+k+F +L  ldp 
  MMETSP1174-20130828|9557_1 518 NESFNLLQLIANDCYRMGQFFYAAKAFDVLERLDPD 553
                 556666666788889999999999999999999984 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   2.4e+03      10      23 ..      25      38 ..      23      39 .. 0.85
   2 ?    2.0   0.0     0.042        57       9      29 ..      59      79 ..      58      86 .. 0.79
   3 ?   -3.6   0.0       2.6   3.5e+03      15      26 ..     228     239 ..     227     242 .. 0.82
   4 ?   -3.1   0.0       1.8   2.4e+03       9      25 ..     354     370 ..     351     371 .. 0.80
   5 ?    1.2   0.0     0.079   1.1e+02       9      30 ..     462     483 ..     461     486 .. 0.85
   6 !    8.8   0.0   0.00029      0.39       8      30 ..     496     518 ..     494     523 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.8
   TIGR00756 10 lckagrveeAlelf 23
                + k++++  Al l+
  MMETSP1174-20130828|9557_1 25 YIKNRDYVGALVLL 38
                889****9999876 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.042
   TIGR00756  9 glckagrveeAlelfdeMker 29
                + ++ g++e Ale +++++ +
  MMETSP1174-20130828|9557_1 59 CAFHLGKYERALEAYQSIETH 79
                55789**********998765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.6
   TIGR00756  15 rveeAlelfdeM 26 
                 ++ eA ++++++
  MMETSP1174-20130828|9557_1 228 HFQEATDIYKRL 239
                 589999***986 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 1.8
   TIGR00756   9 glckagrveeAlelfde 25 
                  + ++g v +A el ++
  MMETSP1174-20130828|9557_1 354 YYLRNGGVQDAYELIKD 370
                 68899999999999876 PP

  == domain 5    score: 1.2 bits;  conditional E-value: 0.079
   TIGR00756   9 glckagrveeAlelfdeMkerg 30 
                 +l++ g+++ A+e + +++ ++
  MMETSP1174-20130828|9557_1 462 SLAQTGNFKAAEEALLLIQNEK 483
                 6899*********998888776 PP

  == domain 6    score: 8.8 bits;  conditional E-value: 0.00029
   TIGR00756   8 sglckagrveeAlelfdeMkerg 30 
                 +++  +g+++ A+el+ +M  ++
  MMETSP1174-20130828|9557_1 496 RCYISNGNPRNAWELYLKMDTSN 518
                 8******************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 1313.50
//
Query:       MMETSP1174-20130828|9559_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|9560_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|9558_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.4   0.6      0.033   10.9   0.4    1.2  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
      0.055   10.2   3.2      0.098    9.4   2.2    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   1.6e-05     0.033     101     186 ..     155     243 ..     123     337 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
   TIGR03794 101 arekLtqLqeqlekvrnfqvrekearekkflksk..eaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeq.ekr 186
                 +r++ t L + ++++ +++  +     ++++ ++   aL+ ++  l +e   Ls+e+a+ + +++ k+++l   r l  +   e+ +k+
  MMETSP1174-20130828|9558_1 155 QRKHATELGQTRNELEAYKQSHLFFTTRHDASAScnTALQSQVDTLTAEASRLSNELANAKTAIDAKETELASYRALYSEDALERnIKG 243
                 567789999***********999888888877652267********************************9998888777776663333 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.2   4.8e-05     0.098     121     194 ..     164     239 ..     123     241 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.8e-05
   TIGR01843 121 d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsr 194
                 +  ++ e+ k+++  f+ r +a ++   +l++q++ l ae+++l ++l+++++ +++ + el + r L+++ + +r
  MMETSP1174-20130828|9558_1 164 QtrNELEAYKQSHLFFTTRHDASASCNTALQSQVDTLTAEASRLSNELANAKTAIDAKETELASYRALYSEDALER 239
                 1237788899999999999999999999999999999999999999999999999999999999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 1129.74
//
Query:       MMETSP1174-20130828|9564_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-77  257.4   5.6    4.1e-77  257.1   3.9    1.0  1  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.1   3.9     1e-80   4.1e-77       2     281 ..      40     360 ..      39     363 .. 0.93

  Alignments for each domain:
  == domain 1    score: 257.1 bits;  conditional E-value: 1e-80
   TIGR01297   2 erallialllnlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpaderhpfGygraeiLaallnalflvvvalfilyeAierlin....peeeiegslmlivaivglivnlilalllkra...Gkkes....................................slalraaalhvlsDllsSvgvligvlliyfg.gwkiaDpiaslvisvlilktafrllkesievLleaapdeeldlievkkkilkieg......vksvhdlhiwrigsgklvldvhvevdpelsakeaheialeiereilkrepevshvtiqve 281
                 +++l++al +++ +m+ve+v+g++++SlA+++DaaH ++D++a+++a++a ++++k ++++h++Gy+rae+L++l++ lf++v+++++++eAi+r+++    + ee++g++m iva++g++vnlil ++l      G++++                                    ++++ aa+lhv++Dl++Svgv++++l+i+++  w+++Dp++++v++ ++++t++++l+++i+vLle++pd ++d++++++++l+i++      v +vhdlh+w+i +gk +l++h+  +++        +al++++ +  +++++ h+tiq++
  MMETSP1174-20130828|9564_1  40 RQKLFMALGFCASFMIVEFVAGYISNSLAIITDAAHLATDASAFGLAIAATYLAEKGPTSSHSYGYQRAEVLSSLASTLFIWVLTIILIWEAIQRVVDwandDMEEVDGKTMSIVALIGVFVNLILERILGGNgehGHSHGgtvhkkhvemtdmnledggnhsasygsveeehdehvNVNMDAAYLHVIGDLIQSVGVMVAGLIIWWKpTWQVIDPLCTFVFAGIVMFTTLNMLRSNINVLLEGVPD-DVDVDRLRAHLLEIKDdtgasiVMNVHDLHVWNIAPGKPLLSAHIHASNAP-------VALQKAHYV-CQKYGIPHATIQIN 360
                 6899************************************************************************************************99666*************************99866667777*********************************************************************************************************5.************998666777799*********************876554.......345554444.44588888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1151.07
//
Query:       MMETSP1174-20130828|9562_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-11   39.8   2.4    8.6e-06   22.8   0.0    3.1  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    2.2e-06   24.6   0.4     0.0016   15.2   0.1    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    4.8e-06   23.9   3.2      0.002   15.2   0.1    3.0  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    2.3e-05   21.2   0.2    5.7e-05   19.9   0.1    1.6  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.1e-05   20.5   1.0     0.0022   14.3   0.1    2.2  2  TIGR00763 lon: ATP-dependent protease La
    5.9e-05   19.4   1.0    0.00035   16.8   0.0    2.3  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    0.00046   17.2   0.2     0.0031   14.5   0.0    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    0.00082   15.9   0.1       0.14    8.5   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0019   14.9   0.0     0.0031   14.2   0.0    1.3  1  TIGR00665 DnaB: replicative DNA helicase
     0.0024   14.3   0.3      0.019   11.4   0.1    2.3  3  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0059   14.0   0.7      0.014   12.8   0.0    1.8  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0068   13.0   0.1      0.044   10.3   0.0    2.2  2  TIGR03689 pup_AAA: proteasome ATPase
  ------ inclusion threshold ------
      0.017   12.4   0.1       0.15    9.2   0.0    2.1  2  TIGR00335 primase_sml: putative DNA primase, eukaryotic-type, small subunit
      0.018   12.5   0.0      0.032   11.7   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.026   10.9   0.1      0.076    9.4   0.0    1.7  2  TIGR00368 TIGR00368: Mg chelatase-like protein
       0.03   10.7   0.1       0.51    6.6   0.0    2.0  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.4e-08   8.6e-06       6      58 ..      39      91 ..      37      97 .. 0.94
   2 !   12.4   0.5   4.8e-05     0.012      84     219 ..     298     426 ..     285     441 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.4e-08
   TIGR00635  6 fiGqekvkeklqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvkl 58
                 +Gqek +e   ++++  +++k a   +ll+G PG Gkt+la  +a+elg k+
  MMETSP1174-20130828|9562_1 39 LVGQEKAREACGIVVDLIRSKKMAGRALLLAGAPGTGKTALALSVAQELGPKV 91
                59***********************************************9775 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 4.8e-05
   TIGR00635  84 vlfiDeihrlskaveellypamedfkldivigkgpaaksvrldlapftlvGattraGkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarr.srgtprianrllrrvrdfaqvkeekvink 219
                 vlfiDe+h l+ +   +l  a+e     iv+       +  +   + t v        +   L dr  i+  +  Y  ee+ +i+++ a   ++ +++ea ++++   sr   r a ++l   r +a+ ++ ++i+ 
  MMETSP1174-20130828|9562_1 298 VLFIDEVHMLDIECFTYLNRALESSLSPIVVFATNR-GICTI---RGTDV--V-SPHGVPVDLLDRMLIIRTMP-YCMEEMVQILSIRAGAEDIVVSDEALTALGDVgSRTSLRYAVQMLTPCRILADTNGRAEIDV 426
                 888888888888888888888888766666643222.22222...22222..1.2233556799**99998887.56899************************985389999**************9999998875 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0015      0.38      42      65 ..      65      88 ..      52     118 .. 0.87
   2 !   15.2   0.1   6.3e-06    0.0016     199     272 ..     364     433 ..     359     447 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0015
   TIGR02928 42 nvliyGktGtGKtavtkkvlkele 65
                 +l+ G +GtGKta +  v +el 
  MMETSP1174-20130828|9562_1 65 ALLLAGAPGTGKTALALSVAQELG 88
                67999**************99986 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 6.3e-06
   TIGR02928 199 pYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAq 272
                 pY  ee+ +IL+ Ra    +d v++de++    ++  ++  ++R A+++L     +A+++g+ ++ + +ve+ +
  MMETSP1174-20130828|9562_1 364 PYCMEEMVQILSIRAG--AEDIVVSDEALTALGDVGSRT--SLRYAVQMLTPCRILADTNGRAEIDVVDVEETD 433
                 999***********98..89****************999..9****************************9976 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0016       0.4      26      58 ..      52      85 ..      37      90 .. 0.71
   2 ?   -1.2   0.0      0.78     2e+02     208     243 ..     249     284 ..     235     295 .. 0.76
   3 !   15.2   0.1   7.9e-06     0.002     121     237 ..     299     431 ..     297     449 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0016
   TIGR02397 26 Lknaikknkia.hayLfsGprGvGKTsiArilAk 58
                +   i+++k+a  a L++G+ G+GKT++A  +A+
  MMETSP1174-20130828|9562_1 52 VVDLIRSKKMAgRALLLAGAPGTGKTALALSVAQ 85
                44567777775379*************9977666 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.78
   TIGR02397 208 aeGslRDalslldqlislskgkitlekveellglvs 243
                 a  +  D +sl+ q++  +k +it++  +e+  +v+
  MMETSP1174-20130828|9562_1 249 APKGGQDVMSLMGQMMKPKKTEITEKLRTEINRVVN 284
                 555567999999999999999999887666665555 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 7.9e-06
   TIGR02397 121 YiiDEvhmLsksafnaLLKtlEePpehvvFilaT.........te...lekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliark.aeGslRDalslldqlislskg....kitlekvee 237
                   iDEvhmL  + f  L + lE   + +v ++aT         t+   ++ +p  +l R    +      e++v+ l+  +  e+i v++eaL+++ +  +  slR a+++l  + +l +     +i++ +vee
  MMETSP1174-20130828|9562_1 299 LFIDEVHMLDIECFTYLNRALESSLSPIV-VFATnrgictirgTDvvsPHGVPVDLLDRMLIIRTMPYCMEEMVQILSIRAGAEDIVVSDEALTALGDVgSRTSLRYAVQMLTPCRILADTngraEIDVVDVEE 431
                 579********************988765.45553333334445533368999999999999999999999999999999999999999999999998725689999999998666554432233555555555 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   2.2e-07   5.7e-05      90     125 ..      64     101 ..      37     106 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.2e-07
   TIGR01241  90 kGvllvGpPGtGktLlakavaGea..gvpffsisGsdf 125
                 + +ll G+PGtGkt la +va e   +vpf  + Gs+ 
  MMETSP1174-20130828|9562_1  64 RALLLAGAPGTGKTALALSVAQELgpKVPFCPMVGSEV 101
                 679********************6337*********96 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   8.7e-06    0.0022     347     378 ..      57      88 ..      50      94 .. 0.89
   2 !    4.5   0.0     0.008       2.1     482     507 ..     349     374 ..     339     384 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.7e-06
   TIGR00763 347 lrkklkgkilclvGPPGVGKtSlaksiAkaln 378
                 + kk+ g+ l l G PG GKt+la s+A+ l+
  MMETSP1174-20130828|9562_1  57 RSKKMAGRALLLAGAPGTGKTALALSVAQELG 88 
                 56899***********************9886 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.008
   TIGR00763 482 iPepLldRmEvielsgYveeeKleia 507
                 +P  LldRm +i+   Y  ee ++i 
  MMETSP1174-20130828|9562_1 349 VPVDLLDRMLIIRTMPYCMEEMVQIL 374
                 8999*******************996 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06   0.00035     488     541 ..      64     118 ..      56     140 .. 0.68
   2 ?   -0.2   0.0       0.2        51      10      47 ..     161     201 ..     152     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-06
   TIGR01243 488 kgvllfgppgtgktllakavatesg..anfiavrgpeilskwvgesekaireifrk 541
                 + +ll g pgtgkt la +va+e g    f  + g e++s  v ++e  + e fr+
  MMETSP1174-20130828|9562_1  64 RALLLAGAPGTGKTALALSVAQELGpkVPFCPMVGSEVYSTEVKKTEI-LMENFRR 118
                 456666777777777777777765522346666677777766666553.3344444 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.2
   TIGR01243  10 ykrdvgrgivridrrtaeelg...vepgdvveiekgerkav 47 
                 +k   g +  r+d++  e l    v +gdv+ ie++ + + 
  MMETSP1174-20130828|9562_1 161 LKTSKGAKQLRLDPQIYEALQkekVSVGDVIYIESSSGAVK 201
                 66777888999999988877433378999999998777654 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05    0.0031     158     193 ..      65     102 ..      60     120 .. 0.84
   2 ?   -0.0   0.0      0.32        83     191     226 ..     270     306 ..     262     312 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
   TIGR01242 158 GvllyGppGtGktllakavaeet..natfirvvgselv 193
                  +ll G pGtGkt la +va+e   +  f  +vgse+ 
  MMETSP1174-20130828|9562_1  65 ALLLAGAPGTGKTALALSVAQELgpKVPFCPMVGSEVY 102
                 689******************97446889******985 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.32
   TIGR01242 191 elvkkyiGeGarlv.revfklakekapsiifideida 226
                 e+ +k   e  r+v r + +   e  p ++fide+  
  MMETSP1174-20130828|9562_1 270 EITEKLRTEINRVVnRYIDQGVAELVPGVLFIDEVHM 306
                 6667777777777723456677899999999999865 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00055      0.14      27      63 ..      53      90 ..      37     119 .. 0.77
   2 !    5.2   0.0    0.0056       1.4     216     249 ..     294     327 ..     249     355 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00055
   TIGR00764 27 vevikkaakqkrnvlliGePGvGksmlakama.ellpk 63
                v++i++     r +ll G PG+Gk+ la ++a el pk
  MMETSP1174-20130828|9562_1 53 VDLIRSKKMAGRALLLAGAPGTGKTALALSVAqELGPK 90
                677888888889****************9998345455 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0056
   TIGR00764 216 ahkGvlyideiatlslkvqqslltalqekkfpit 249
                    Gvl+ide++ l ++   +l  al     pi 
  MMETSP1174-20130828|9562_1 294 LVPGVLFIDEVHMLDIECFTYLNRALESSLSPIV 327
                 456*******************999988777775 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05    0.0031     198     241 ..      66     113 ..      60     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   TIGR00665 198 iivAgRPsmGKtafalniaeniakkekl.p...vavFSLEmskeqLvq 241
                 +++Ag P+ GKta+al++a+++  k    p     v+S E++k+++++
  MMETSP1174-20130828|9562_1  66 LLLAGAPGTGKTALALSVAQELGPKVPFcPmvgSEVYSTEVKKTEILM 113
                 579******************998655312111568999999988876 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   7.3e-05     0.019     312     335 ..      63      86 ..      35      89 .. 0.78
   2 ?   -1.3   0.0      0.51   1.3e+02     375     387 ..     295     307 ..     266     311 .. 0.75
   3 ?   -1.1   0.0      0.44   1.1e+02     449     482 ..     363     396 ..     358     428 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.3e-05
   TIGR03922 312 skHlllaGPPGtGkttiArvvaki 335
                  + lllaG PGtGkt++A  va+ 
  MMETSP1174-20130828|9562_1  63 GRALLLAGAPGTGKTALALSVAQE 86 
                 46689*************999975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.51
   TIGR03922 375 LggvlFlDEayaL 387
                 + gvlF+DE++ L
  MMETSP1174-20130828|9562_1 295 VPGVLFIDEVHML 307
                 469*******988 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.44
   TIGR03922 449 esYspdElveiakrmaeerdsvlddaAaeallea 482
                   Y  +E+v+i    a ++d v+ d+A  al + 
  MMETSP1174-20130828|9562_1 363 MPYCMEEMVQILSIRAGAEDIVVSDEALTALGDV 396
                 67999**********************9998764 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   5.3e-05     0.014      20      47 ..      62      89 ..      47     107 .. 0.82
   2 ?   -1.7   0.1       1.4   3.6e+02     172     215 ..     352     396 ..     326     441 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.3e-05
   TIGR02640 20 sgypvhlrGPaGtGktslalhvakkrdr 47
                +g+++ l G  GtGkt+lal va++++ 
  MMETSP1174-20130828|9562_1 62 AGRALLLAGAPGTGKTALALSVAQELGP 89
                79999*******************9864 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.4
   TIGR02640 172 alldrlvtisvdykdeetetaivraktdvaeesaa.aivrlvrel 215
                  lldr++ i    + +e  ++i++ ++++++  ++ + ++ + ++
  MMETSP1174-20130828|9562_1 352 DLLDRMLIIRTMPYCMEEMVQILSIRAGAEDIVVSdEALTALGDV 396
                 588998888766666777788888888887755431344444444 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00017     0.044     215     245 ..      62      92 ..      47     118 .. 0.77
   2 ?   -1.0   0.0      0.45   1.2e+02     137     166 ..     178     206 ..     171     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
   TIGR03689 215 pPkGvllyGPPGcGktliakavanslaekva 245
                 + + +ll G PG+Gkt +a +va+ l+ kv 
  MMETSP1174-20130828|9562_1  62 AGRALLLAGAPGTGKTALALSVAQELGPKVP 92 
                 56889********************998764 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.45
   TIGR03689 137 galaeeklraGdsllvdlkaglaleavpks 166
                 +al++ek+ +Gd + +++++g a+++v +s
  MMETSP1174-20130828|9562_1 178 EALQKEKVSVGDVIYIESSSG-AVKRVGRS 206
                 78999***********99887.67777766 PP

>> TIGR00335  primase_sml: putative DNA primase, eukaryotic-type, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.27        69     246     278 ..     260     292 ..     228     299 .. 0.63
   2 ?    9.2   0.0   0.00059      0.15     140     215 ..     370     447 ..     357     451 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.27
   TIGR00335 246 tsllksvkqdkvyekleelvlkilyrklDakVt 278
                 ++++ ++k+  + ekl   ++++  r++D+ V 
  MMETSP1174-20130828|9562_1 260 MGQMMKPKKTEITEKLRTEINRVVNRYIDQGVA 292
                 344455555678888888888888999998875 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00059
   TIGR00335 140 lkivfSGrRGy.HvyvkDeevrelgseerreildylaviredkrlalkrvyspelars.liqlklrfvsselarrllk 215
                 +  + S r G+  + v+De + +lg++ +r  l+y  ++ ++ r   +     e++   +++ ++ fv  ++  +ll 
  MMETSP1174-20130828|9562_1 370 MVQILSIRAGAeDIVVSDEALTALGDVGSRTSLRYAVQMLTPCRILADTNGRAEIDVVdVEETDTLFVDAKASAKLLA 447
                 55566666666358999***************************9999999888876524566677777777777665 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012     0.032      10      38 ..      59      87 ..      52     103 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
   TIGR00678 10 kgrlahAlLfaGpeGvGkealaealakal 38
                k+    AlL+aG +G+Gk+ala+ +a++l
  MMETSP1174-20130828|9562_1 59 KKMAGRALLLAGAPGTGKTALALSVAQEL 87
                445568********************987 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0003     0.076     195     238 ..      40      91 ..      35     117 .. 0.72
   2 ?   -1.8   0.0      0.72   1.9e+02     297     322 ..     297     322 ..     292     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0003
   TIGR00368 195 kGqqrakraleiaa.......aGghnllllGPPGsGktlla.krlqgllPel 238
                 +Gq++a+ a  i +         g  lll G PG+Gkt la + +q l P++
  MMETSP1174-20130828|9562_1  40 VGQEKAREACGIVVdlirskkMAGRALLLAGAPGTGKTALAlSVAQELGPKV 91 
                 68888888877765222322246789************88724556666665 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.72
   TIGR00368 297 GvlfldellefkrkvldalrePledg 322
                 Gvlf+de+  ++ + +  l + le+ 
  MMETSP1174-20130828|9562_1 297 GVLFIDEVHMLDIECFTYLNRALESS 322
                 9*******999999999999988875 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.002      0.51     161     181 ..      61      81 ..      41      87 .. 0.80
   2 ?    1.7   0.0      0.06        15     264     288 ..     297     321 ..     280     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
   TIGR01447 161 lksnfslitGGPGTGKTttva 181
                 + ++ +l+ G PGTGKT ++ 
  MMETSP1174-20130828|9562_1  61 MAGRALLLAGAPGTGKTALAL 81 
                 5567789**********9875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.06
   TIGR01447 264 DvlvvDEaSMvdlelmakLlealkk 288
                  vl +DE  M+d+e +  L  al+ 
  MMETSP1174-20130828|9562_1 297 GVLFIDEVHMLDIECFTYLNRALES 321
                 69***************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.68
# Mc/sec: 881.22
//
Query:       MMETSP1174-20130828|9568_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 568.57
//
Query:       MMETSP1174-20130828|9566_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 964.89
//
Query:       MMETSP1174-20130828|9569_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|9567_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.2   0.3       0.04   11.4   0.2    1.3  1  TIGR04052 AZL_007920_fam: AZL_007920/MXAN_0976 family protein


Domain annotation for each model (and alignments):
>> TIGR04052  AZL_007920_fam: AZL_007920/MXAN_0976 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   9.7e-06      0.04      72     134 ..     222     289 ..     207     299 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.7e-06
   TIGR04052  72 vGvPeelNHldaelaasPLndsgmfWsWqaGykflkidvekkaavs.....kskkwvlHlGStgCaae 134
                 +G+     H+ a +  +PLn+ g +W+W +Gy+    +  ++ ++s     +  +w++   S  C ++
  MMETSP1174-20130828|9567_1 222 LGISCGTWHSAAIIMVAPLNACGEVWTWGSGYHGQLGQGVSNRSLSpgrvkEISDWHIYAKSISCGSH 289
                 78888899************************754333333333445666556677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1445.28
//
Query:       MMETSP1174-20130828|9565_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.6e-148  492.0   0.0   9.4e-148  491.7   0.0    1.1  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
    3.5e-98  327.8   0.0    5.6e-98  327.1   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
  ------ inclusion threshold ------
       0.01   13.2   0.5      0.056   10.8   0.1    2.2  2  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
      0.013   12.3   0.0        1.5    5.5   0.0    2.2  2  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
      0.019   12.8   5.3      0.037   11.8   0.1    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.7   0.0  1.1e-150  9.4e-148      81     686 ..       2     602 ..       1     631 [. 0.92

  Alignments for each domain:
  == domain 1    score: 491.7 bits;  conditional E-value: 1.1e-150
   TIGR01967  81 enqvviiaGetGsGkttqlPkiclelGrGsrGlightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaavdel.veeekGdiliflpGereirdaaealrkrklrhve......ilPlyarlsaeeqqrvfqphsgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrP.eftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneepadydaihkallsGllsqiGakdekkeysGa.rnrkflifPgselak..ksPkwvmaaelvetsklyarlvakiePeWveevaahl 686
                 enqvvii GetGsGkttql +   e G    G+ig tqPrr+aa sva+rvaee+gt+lGe vGy++rfed  se+t++k +tdG+ll e   +r l+ y+ ii+deahersl  d l+G l+++++rr dlk+i+tsat++ e fs+ +   P+ ++ Grty ve  +     +      +d ++a ++ v  + +   +Gdil+f++G+ +i  + e+l +r  r  e      +lP+y++l a+ q ++f++   r+ +++tn+aetsltv gi+yv+d+G  ++  y  +  +  l + pisqa anqr Gr Gr ++G c rl+ e  +++   +   Pei rtnl  v+l +++l++ +i +f f+++P  ++i   +  l  l+al++      l p+Gr++ ++P+dP la+mll a+ l+c  evli++s ls+  +  rP+ +++++d a  rf  +esd l+l++ +r+ +++  + s+     ++ k++++   +   ++++ ql +++   +l+  +  +++d + ka+ s  + +    ++  ey          ++P+s l+    +P +v+  el+ t + y r v+ +e eW+ e+ + +
  MMETSP1174-20130828|9565_1   2 ENQVVIIVGETGSGKTTQLTQYLYEDGYTLCGMIGCTQPRRVAAMSVANRVAEEFGTELGEEVGYAIRFEDVTSEKTVIKYMTDGVLLRESLTERDLDSYQCIIMDEAHERSLHTDVLFGILRSVIQRRRDLKLIVTSATLNSETFSNFYGGVPVFHIPGRTYFVEKLH----AKGPC---EDYVDAAVKQVMTIhMSFPPGDILVFMTGQEDIEVTCEVLAERMGRMGEdlprllLLPMYSQLPADLQAKIFESSDVRKCIVSTNIAETSLTVDGIKYVVDSGYCKLKVYNPKIGMDALNVTPISQANANQRAGRAGRTGPGYCYRLFTERQYRDELlANQVPEIQRTNLGNVVLLLKSLGVMNIVDFAFMDPPPAQNILTSMYQLWILGALDNTG---SLSPLGRKMVEFPLDPPLAKMLLFADELECTAEVLIVVSMLSVPSVFFRPKGREEESDTARERFFVPESDHLTLLNTYRQWKQN--DYSS----SWCTKHFVHAKGLNKAREVHAQLLEIMGTQKLTHVSCGTSWDLVRKAICSAYFCNSAHIKGIGEYINMlTSIPCNLHPSSALFGlgYTPDFVVYHELIMTQREYMRSVTAVEGEWLAELGPMF 602
                 8********************************************************************************************************************************************************************9643....33333...34555555555555044556********************999888776555555789***********************************************************************************************987515667**************************************************9998...9***************************************************************************99988644..3443....49*****************************************************99999999997761567899*******963368****************************9998765 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.1   0.0  6.8e-101   5.6e-98      18     445 ..       4     435 ..       1     459 [. 0.95

  Alignments for each domain:
  == domain 1    score: 327.1 bits;  conditional E-value: 6.8e-101
   TIGR01970  18 pqvvLeappGaGkstalPLalLdapwligrkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda.....sevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqa.erlaaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeer 445
                 + v++   +G+Gk+t+l   l + +++  + i    Prr+aa +va+r+a+e g e Ge+vGy +r+e  +s+kt +  +t+G+l r  +++  L+  + +i+De hersl++D+   + + v +  r DLk+++ satL+ e +s++    pv +  Gr++ ve  + +   ++ ++ +v++ ++  +   +g++Lvf+ Gq +i+   e Laer+++     +++ l+P+y +l+++ q ++ ++  +  rk +++tniaetslt++G++ v+Dsg+ +   ++pk G+  L+++ isqa a+qraGraGr+ pG c+rL++e q  ++l a++ pei +++L +++l l   G+    d++f+d PPa +++++   L  lgald  g+l+  G++++e +++P la++ll a + e  a+ + + ++L  +
  MMETSP1174-20130828|9565_1   4 QVVIIVGETGSGKTTQLTQYLYEDGYTLCGMIGCTQPRRVAAMSVANRVAEEFGTELGEEVGYAIRFEDVTSEKTVIKYMTDGVLLRESLTERDLDSYQCIIMDEAHERSLHTDVLFGILRSVIQR-RRDLKLIVTSATLNSETFSNFYGGVPVFHIPGRTYFVEKLHAKGPCEDYVDAAVKQVMTIHMSFPPGDILVFMTGQEDIEVTCEVLAERMGRmgedlPRLLLLPMYSQLPADLQAKIFES--SDVRKCIVSTNIAETSLTVDGIKYVVDSGYCKLKVYNPKIGMDALNVTPISQANANQRAGRAGRTGPGYCYRLFTERQYrDELLANQVPEIQRTNLGNVVLLLKSLGVMnIVDFAFMDPPPAQNILTSMYQLWILGALDNTGSLSPLGRKMVEFPLDPPLAKMLLFADELECTAEVLIVVSMLSVP 435
                 55788999*****************************************************************************************************************99876.779***************************************************999999999**************************98655566899****************9875..679*************************************************************************997257889999********************999********************************************************9999999988888888765 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.8e-05     0.056      15      39 ..       2      26 ..       1      32 [. 0.91
   2 ?   -0.3   0.0      0.17   1.4e+02     159     188 ..      73     102 ..      64     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.8e-05
   TIGR03880 15 egsvivviGeaGtGkttlslqflye 39
                e++v++++Ge+G Gktt   q+lye
  MMETSP1174-20130828|9565_1  2 ENQVVIIVGETGSGKTTQLTQYLYE 26
                6789*******************97 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.17
   TIGR03880 159 faskyglieylaDgvillkyvrsddlrdvr 188
                  +s   +i y++Dgv+l +   + dl+ ++
  MMETSP1174-20130828|9565_1  73 VTSEKTVIKYMTDGVLLRESLTERDLDSYQ 102
                 6788899********998888887877665 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0037       3.1     151     167 ..       5      21 ..       1      31 [. 0.81
   2 ?    5.5   0.0    0.0019       1.5     249     369 ..     529     645 ..     504     649 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0037
   TIGR02525 151 lGlicGetGsGkstlla 167
                 + +i GetGsGk+t+l+
  MMETSP1174-20130828|9565_1   5 VVIIVGETGSGKTTQLT 21 
                 6689**********986 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0019
   TIGR02525 249 sGhfclgtlhvkspGeaisrlltlvPpeireaiafdll.svlqyiivqkllrtkdGkrqavreyivlddelrrklasedyskWgryideilreekrrladqa..walylegridkrevaeviga 369
                 s +fc  + h+k  Ge i  +lt +P ++  + a   l     +++  +l+ t+   r+ +r    ++ e+ ++l+ + +s    y   + +++k +  +q   w + +e   d++e + +++a
  MMETSP1174-20130828|9565_1 529 SAYFC-NSAHIKGIGEYIN-MLTSIPCNLHPSSALFGLgYTPDFVVYHELIMTQ---REYMRSVTAVEGEWLAELGPMFFSVKESYKSRLQKRKKEKQDQQHmdWEMEQE--QDRQEKEAAAAA 645
                 45566.456*******996.789999999988886555156799999****995...99999999*****************9999999988888888777622566555..444444444443 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.5e-05     0.037     197     215 ..       2      20 ..       1      22 [. 0.87
   2 ?    2.6   0.8      0.03        25      67     107 ..     610     650 ..     576     675 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.5e-05
   TIGR03499 197 kggviaLvGptGvGKTTTl 215
                 + +v++ vG tG+GKTT l
  MMETSP1174-20130828|9565_1   2 ENQVVIIVGETGSGKTTQL 20 
                 5679*************76 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.03
   TIGR03499  67 kkaleeaepkklskaeekeekekeaeekaaeaaqeaekkle 107
                 k++l++++++k++++    e e+e++++++eaa++a k + 
  MMETSP1174-20130828|9565_1 610 KSRLQKRKKEKQDQQHMDWEMEQEQDRQEKEAAAAAMKLAR 650
                 33333333333333333333333333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.19s 00:00:00.92 Elapsed: 00:00:00.82
# Mc/sec: 1099.37
//
Query:       MMETSP1174-20130828|9571_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.9   0.0      0.025   11.6   0.0    1.1  1  TIGR02283 MltB_2: lytic murein transglycosylase


Domain annotation for each model (and alignments):
>> TIGR02283  MltB_2: lytic murein transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-06     0.025     141     184 ..      52      95 ..      25     100 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6e-06
   TIGR02283 141 rgdvtreelkgswaGalGqtQflPssylkyavDfdgdGrrdiwk 184
                 + + + ++++g w  a+G +Q +P   +  + D+dg  +  i+ 
  MMETSP1174-20130828|9571_1  52 KYESDVKKTTGGWILAIGTAQVVPHPNVGKGLDVDGHDKATIVF 95 
                 55678899****************************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9575_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-09   34.2   0.3    4.2e-09   34.0   0.2    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    1.3e-07   27.6   0.0    1.5e-07   27.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0024   14.7   1.0     0.0055   13.5   0.1    1.8  2  TIGR02906 spore_CotS: spore coat protein, CotS family
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.027   11.8   0.0    1.1  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   4.1e-12   4.2e-09      44     127 ..      24     118 ..       3     120 .] 0.87

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 4.1e-12
   TIGR03724  44 trkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiivkddk 127
                  ++Ear+l++++++ ++  +  +vd++++ ivmey  g +l d++e++++           +++ +   ++ ++H+  i+h D+   Ni v+ + 
  MMETSP1174-20130828|9575_1  24 AINEARVLQKLNHSNITKFYESFVDKNKFYIVMEYAGGGDLCDVIERRRKrreyfveekvmQIFVQCLIALKHMHDRHILHRDIKSGNIFVTRKG 118
                 689*******************************************988889999999777777777788999*****************97665 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.4e-10   1.5e-07      28     117 ..      27     119 ..      14     120 .] 0.87

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.4e-10
   TIGR03903  28 eialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaad....GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadv 117
                 e  + ++L+h ni +  +s + ++   + v ey  G  l +v+            ++  ++ +q L al + hd+ ++hRD+k  ni v+ ++v
  MMETSP1174-20130828|9575_1  27 EARVLQKLNHSNITKFYESFVDKN-KFYIVMEYAGGGDLCDVIERRrkrrEYFVEEKVMQIFVQCLIALKHMHDRHILHRDIKSGNIFVTRKGV 119
                 777889**********99987666.899************99976511115577888999*****************************99875 PP

>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   5.3e-06    0.0055      18      62 ..       5      49 ..       3      74 .. 0.83
   2 ?   -0.2   0.0     0.081        83     186     206 ..      98     118 ..      92     120 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.3e-06
   TIGR02906 18 dsgekiLKkikyseekllfilsaqeyLkkngfenipkilktkdge 62
                ++++++LK+i+ ++e++   ++ +  L+k +  ni k++++  ++
  MMETSP1174-20130828|9575_1  5 SQKQYVLKEINVPPEHFEVAINEARVLQKLNHSNITKFYESFVDK 49
                6899*********************************99764333 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.081
   TIGR02906 186 kkrglcHqDyayhNillkdne 206
                 + r + H+D+  +Ni ++ ++
  MMETSP1174-20130828|9575_1  98 HDRHILHRDIKSGNIFVTRKG 118
                 567789*********988755 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05     0.027     119     168 ..      11      62 ..       3      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.6e-05
   TIGR00500 119 eklleatkealkkaieeikvgkrik..eiskaiektaeekgfsvvkeytGHG 168
                  k +++  e ++ ai+e++v ++++  +i+k  e+++++++f +v ey+G G
  MMETSP1174-20130828|9575_1  11 LKEINVPPEHFEVAINEARVLQKLNhsNITKFYESFVDKNKFYIVMEYAGGG 62 
                 566778889999****999988765339*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 344.32
//
Query:       MMETSP1174-20130828|9576_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 953.25
//
Query:       MMETSP1174-20130828|9578_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29    9.0   7.4          3    5.7   0.5    3.5  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0   0.00088       3.6       7      21 ..      17      31 ..      16      34 .. 0.84
   2 ?    5.7   0.5   0.00074         3       7      18 ..      43      54 ..      42      54 .. 0.96
   3 ?   -2.6   0.1      0.32   1.3e+03       7      12 ..      69      74 ..      69      77 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00088
   TIGR01376  7 FsnNsakgsGGAIya 21
                F  N a  sGGAI++
  MMETSP1174-20130828|9578_1 17 FDWNGAMSSGGAIHS 31
                66688999*****97 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00074
   TIGR01376  7 FsnNsakgsGGA 18
                F +Nsa + GGA
  MMETSP1174-20130828|9578_1 43 FHSNSASNLGGA 54
                99*********9 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.32
   TIGR01376  7 FsnNsa 12
                F +Nsa
  MMETSP1174-20130828|9578_1 69 FRSNSA 74
                899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1269.13
//
Query:       MMETSP1174-20130828|9580_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   14.0   0.2     0.0054   13.9   0.1    1.1  1  TIGR03001 Sig-70_gmx1: RNA polymerase sigma-70 factor, Myxococcales family 1
  ------ inclusion threshold ------
       0.51    7.5   5.4        1.6    5.9   1.4    2.0  2  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR03001  Sig-70_gmx1: RNA polymerase sigma-70 factor, Myxococcales family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.6e-06    0.0054      84     141 ..      53     110 ..      15     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.6e-06
   TIGR03001  84 apprlaeYsGrGpLlsWvrivAvRialelkkqerraseleeetelaellapasdpeld 141
                  p+ l e+  +  + sW r++A+R a   ++++++++e +++   +++++++++++l 
  MMETSP1174-20130828|9580_1  53 NPAALKEFHNKTIIPSWTRASALRSANSTTSESKQNKERKTNDFKTAAMTKRDQAALG 110
                 5788999999999*********************999999999999999999877765 PP

>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0028       5.7     159     207 ..       8      58 ..       4      61 .. 0.73
   2 ?    5.9   1.4   0.00076       1.6     178     227 ..      59     108 ..      48     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0028
   TIGR03413 159 kvycaHEYtlsNlr..Falavepenealkerlkeveal.rakgkptlPstla 207
                 +++ca    l+N++  +a+  + en++l +r++e+++  ++k  +t P+ l+
  MMETSP1174-20130828|9580_1   8 QLWCADNKHLKNMNemWAK-TKNENPTLVTRYEEIAKVgKEKYAMTNPAALK 58 
                 6889988888887543665.57789999999999987625667889998887 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00076
   TIGR03413 178 epenealkerlkevealrakgkptlPstlaeekatNpFLraeeaevkaal 227
                 e +n+++    ++++alr+++++t  s+ ++e++tN F  a+ ++  +a+
  MMETSP1174-20130828|9580_1  59 EFHNKTIIPSWTRASALRSANSTTSESKQNKERKTNDFKTAAMTKRDQAA 108
                 66899999999***************************877666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 565.08
//
Query:       MMETSP1174-20130828|9584_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-36  120.6   0.5    0.00038   18.3   0.0    9.0  9  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   1.2e-05      0.05       4      31 ..      13      40 ..      12      42 .. 0.96
   2 !    8.0   0.0   0.00018      0.73       2      34 ..      46      78 ..      45      79 .. 0.94
   3 !   13.0   0.0   4.7e-06     0.019       1      35 []      80     114 ..      80     114 .. 0.97
   4 !   11.1   0.1   1.8e-05     0.073       2      28 ..     116     142 ..     115     144 .. 0.90
   5 !   14.5   0.0   1.5e-06    0.0061       2      24 ..     164     186 ..     163     187 .. 0.92
   6 !   15.1   0.0     1e-06    0.0041       1      29 [.     195     223 ..     195     228 .. 0.93
   7 !   18.3   0.0   9.3e-08   0.00038       1      34 [.     233     267 ..     233     268 .. 0.86
   8 !   16.3   0.0     4e-07    0.0017       1      34 [.     269     303 ..     269     304 .. 0.86
   9 ?    0.1   0.0     0.059   2.4e+02       1      16 [.     305     320 ..     305     321 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
   TIGR00756  4 ntlisglckagrveeAlelfdeMkergi 31
                n+l++++ + g+   A e  ++M+++g 
  MMETSP1174-20130828|9584_1 13 NILLDACRRGGQSVRATETIQLMRRQGY 40
                9*************************96 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00018
   TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPd 34
                t+n  is+++ +g+   A+ l+d M + g++ d
  MMETSP1174-20130828|9584_1 46 TFNFAISACAINGDAPRAVGLLDFMTATGLKAD 78
                9999*************************9988 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 4.7e-06
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                 v+y + ++++ ka  ++ +++l+de  ++g++Pd+
  MMETSP1174-20130828|9584_1  80 VSYGAAMKACMKAQAWRRVVQLLDEATDEGVEPDI 114
                 79*******************************95 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 1.8e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 +y t +s++ k g++  Al+l+  Mk 
  MMETSP1174-20130828|9584_1 116 MYGTAMSAYRKCGDWASALDLLTIMKQ 142
                 89*******************988875 PP

  == domain 5    score: 14.5 bits;  conditional E-value: 1.5e-06
   TIGR00756   2 tyntlisglckagrveeAlelfd 24 
                 t  ++++++++ g++e Al +fd
  MMETSP1174-20130828|9584_1 164 TLAAVMNACARGGEWERALHYFD 186
                 7789*****************97 PP

  == domain 6    score: 15.1 bits;  conditional E-value: 1e-06
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                 v+y + i +++k  ++e Al ++ eM+++
  MMETSP1174-20130828|9584_1 195 VMYGSAITACGKGQQWERALGYLGEMLSS 223
                 6899**********************986 PP

  == domain 7    score: 18.3 bits;  conditional E-value: 9.3e-08
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker.givPd 34 
                 +++n+ is+++ ag++ eAl l++ M+++  +vPd
  MMETSP1174-20130828|9584_1 233 ICFNAAISACAAAGQLGEALNLLETMQRDhAVVPD 267
                 58************************887345566 PP

  == domain 8    score: 16.3 bits;  conditional E-value: 4e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker.givPd 34 
                 vt+++ is++ ++g++e Al+l++ M+++  +vP+
  MMETSP1174-20130828|9584_1 269 VTFSAAISACEERGEWETALDLLETMERDhAVVPN 303
                 79************************766255566 PP

  == domain 9    score: 0.1 bits;  conditional E-value: 0.059
   TIGR00756   1 vtyntlisglckagrv 16 
                 vt ++ +s+++k g++
  MMETSP1174-20130828|9584_1 305 VTLSAAVSACGKGGQL 320
                 5778899******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 830.75
//
Query:       MMETSP1174-20130828|9586_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|9582_1  [L=1098]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 2100.35
//
Query:       MMETSP1174-20130828|9591_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-16   57.2   0.1    5.4e-16   56.5   0.1    1.3  1  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   1.3e-19   5.4e-16      28     126 ..      31     140 ..      21     141 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 1.3e-19
   TIGR02909  28 eelskvarlksedmadknyfsh.tsPtyG.......spfdmlkkf.GisyraaGeniaagnstvekvvealmnseghraniLspeyteiGvglv..ksgsygklwvqlfi 126
                 +++s+ ar  s +ma+ n+fsh ts  y        s+fd +  +  +s+++a eniaag+st+ +v+  +++s+gh ani ++e + +Gvg+    s+s+g++w+q f+
  MMETSP1174-20130828|9591_1  31 TDMSQAARFHSYEMASLNFFSHsTSADYAylfddstSAFDRILYYtSLSWNSASENIAAGTSTPLAVTLQWLDSSGHCANIYKSENDYLGVGYWydSSSSFGHYWTQNFL 140
                 6799******************55777853333333677777666257********************************************862245567*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1262.70
//
Query:       MMETSP1174-20130828|9585_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1796.09
//
Query:       MMETSP1174-20130828|9592_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 672.72
//
Query:       MMETSP1174-20130828|9589_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1839.60
//
Query:       MMETSP1174-20130828|9594_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|9598_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|9599_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-89  295.0   0.0    1.3e-88  294.6   0.0    1.0  1  TIGR00522 dph5: diphthine synthase
    3.9e-08   30.8   0.0     0.0035   14.6   0.0    2.2  2  TIGR01467 cobI_cbiL: precorrin-2 C20-methyltransferase
     0.0052   14.1   0.0       0.23    8.7   0.0    2.4  2  TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
     0.0064   13.6   0.0      0.012   12.8   0.0    1.4  1  TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase
  ------ inclusion threshold ------
      0.033   11.8   0.0      0.065   10.8   0.0    1.6  1  TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00522  dph5: diphthine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.6   0.0   1.5e-91   1.3e-88       2     252 ..       6     268 ..       5     272 .. 0.97

  Alignments for each domain:
  == domain 1    score: 294.6 bits;  conditional E-value: 1.5e-91
   TIGR00522   2 liliGlGlydendisvkgleaikkadevyvefytavllaasleeleevlGkkvkvleredveenskklierakekdvallvaGdPlvatthtdlvleakrkgievriihaasiisavGltGlqlykfGktvsivftednyrpespynkikenrkiglhtlvlldikvkenek.............rymtiaegleqlleleekkkegaisedtkavviaraGsekekvkadkieelvnydfGePlhvlvvlakklhflelealk 252
                 l+l+GlGl de+di+v+gle +k +++v++e+yt++l     e+le+++G++v+v++r+ ve ++ ++ e ak+++va+lv+GdPl atthtd++++a+  g+ev++ih+as++ a+  +Glqly fG tvsi+f+++ +rp+s y+ki  nr   +htl lldikvke+               rymt++ ++ qlle+e +++eg   +    v++ar+G   +++  +++eel + d G Plh+lv+ + +lh le++ + 
  MMETSP1174-20130828|9599_1   6 LYLVGLGLGDEKDITVRGLECVKRCSKVFLEHYTSILGI-DRERLESFYGREVIVADRDLVESGAEQIYEPAKSEEVAFLVVGDPLCATTHTDMMIRARDFGVEVKVIHNASVMGAIAGCGLQLYSFGLTVSIPFFDEKWRPDSFYDKIGSNRVGKMHTLALLDIKVKEPDYeammkgrtqflppRYMTVSTAVAQLLEIEGRRQEGHCLPSSLGVGMARLGQPTQQIAFGTLEELLEADLGGPLHCLVLCTGDLHDLEMQFMA 268
                 9**********************************9965.9****************************************************************************99*************************************************886577889**********************************************************************************99875 PP

>> TIGR01467  cobI_cbiL: precorrin-2 C20-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.2e-06    0.0051       2      32 ..       5      35 ..       4      40 .. 0.91
   2 !   14.6   0.0   4.3e-06    0.0035      81     134 ..      70     122 ..      54     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.2e-06
   TIGR01467  2 kligvGvGPGdpelitvkaleaLrsadviav 32
                 l+ vG+G Gd++ itv++le ++ + ++++
  MMETSP1174-20130828|9599_1  5 VLYLVGLGLGDEKDITVRGLECVKRCSKVFL 35
                6999*********************999875 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.3e-06
   TIGR01467  81 eavaaeleegkdVafitlGDpslYSTFsyllqrlkepgievevvpGitslaaia 134
                 e++  e ++ ++Vaf+++GDp+   T + ++ r ++ g+ev+v+   + + aia
  MMETSP1174-20130828|9599_1  70 EQIY-EPAKSEEVAFLVVGDPLCATTHTDMMIRARDFGVEVKVIHNASVMGAIA 122
                 4444.5567899********************************9888888876 PP

>> TIGR02467  CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00028      0.23       2      80 ..       9      92 ..       8     131 .. 0.59
   2 ?    2.8   0.0     0.019        15      99     123 ..     213     237 ..     198     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00028
   TIGR02467  2 vGvgpggaelLtaaaieaikkad........lvvGseRhlellaelikekreiiktlkdlkelleeiaatrkekrvvvLasGDPlfy 80
                vG+g g+++ +t +++e++k ++         + G +R  e l+++ +  + i+   +  ++  e+i +  k ++v++L+ GDPl+ 
  MMETSP1174-20130828|9599_1  9 VGLGLGDEKDITVRGLECVKRCSkvflehytSILGIDR--ERLESFYGR-EVIVADRDLVESGAEQIYEPAKSEEVAFLVVGDPLCA 92
                66666666666666666666554111111113445554..344544443.44555466667778889888899************95 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.019
   TIGR02467  99 PgiSSiqlafarlglpwqdavliSl 123
                   +SS+ + +arlg p q++++++l
  MMETSP1174-20130828|9599_1 213 CLPSSLGVGMARLGQPTQQIAFGTL 237
                 5589****************99986 PP

>> TIGR01465  cobM_cbiF: precorrin-4 C11-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.4e-05     0.012       2     115 ..       7     122 ..       6     137 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
   TIGR01465   2 vfvGaGPGdpdLitvkgrkllesadvvl...yAgsL.vneellalarkeaevvdsaalsleeivdllvkaaeegklvvRlhsGDpsiygalaeqlqalealgidyevvPGvsslaaaa 115
                 ++vG G Gd   itv+g ++++++  v    y + L + +e l+       +v+  +l +e   + + +  ++ + v+ l  GDp   ++ ++++ + +  g++++v+   s++ a a
  MMETSP1174-20130828|9599_1   7 YLVGLGLGDEKDITVRGLECVKRCSKVFlehYTSILgIDRERLESFYGREVIVADRDL-VESGAEQIYEP-AKSEEVAFLVVGDPLCATTHTDMMIRARDFGVEVKVIHNASVMGAIA 122
                 89**********************9876465777774566666666555555544444.55555555444.455689*******************************9887776654 PP

>> TIGR01469  cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     8e-05     0.065       3      34 ..       6      37 ..       4     172 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8e-05
   TIGR01469  3 vylvGaGPGdpellTlkalrllqeadvvlyDa 34
                +ylvG G Gd+  +T+++l++++++  v   +
  MMETSP1174-20130828|9599_1  6 LYLVGLGLGDEKDITVRGLECVKRCSKVFLEH 37
                69***********************9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1092.58
//
Query:       MMETSP1174-20130828|9602_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-105  348.9   0.0   5.5e-105  348.7   0.0    1.0  1  TIGR01139 cysK: cysteine synthase A
   2.9e-101  336.6   0.0   3.4e-101  336.3   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
    1.4e-69  232.7   0.0    1.8e-69  232.4   0.0    1.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    5.5e-66  220.9   0.0    1.5e-50  170.2   0.0    2.0  2  TIGR01138 cysM: cysteine synthase B
    8.1e-59  197.0   0.0    1.3e-56  189.8   0.0    2.0  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.1e-13   47.6   0.1    7.5e-13   45.8   0.0    1.6  2  TIGR02079 THD1: threonine dehydratase
    5.1e-13   46.5   0.0    1.6e-12   44.9   0.0    1.6  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    5.6e-13   46.4   0.1    1.2e-12   45.3   0.0    1.4  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    8.5e-11   38.9   0.0    1.2e-10   38.4   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    2.5e-09   34.6   0.0    9.3e-09   32.7   0.0    1.7  2  TIGR00260 thrC: threonine synthase
    7.6e-06   22.5   0.1    1.5e-05   21.6   0.1    1.6  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
      1e-05   22.4   0.1    1.7e-05   21.6   0.0    1.3  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    1.3e-05   22.2   0.1     0.0025   14.8   0.0    2.9  3  TIGR00263 trpB: tryptophan synthase, beta subunit
    2.3e-05   21.1   0.2    0.00065   16.4   0.0    2.5  3  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
     0.0016   16.6   0.0      0.004   15.3   0.0    1.6  1  TIGR02839 spore_V_AE: stage V sporulation protein AE
     0.0049   13.6   1.7      0.009   12.7   0.1    1.9  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
  ------ inclusion threshold ------
      0.012   12.4   0.2      0.018   11.8   0.2    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.016   11.8   0.1       0.03   10.9   0.0    1.4  2  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.7   0.0  2.4e-107  5.5e-105       1     298 []      13     330 ..      13     330 .. 0.97

  Alignments for each domain:
  == domain 1    score: 348.7 bits;  conditional E-value: 2.4e-107
   TIGR01139   1 iseliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk.ldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg................kpgphkiqGigagfiPkvLd....kevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerYlstaLf 298
                 i+e+iGntP+v++n  +++    +++k+e++nP ssvkdr+ala+iedae++gl+k g+tiveatsGntGia+am +a+rgyk ++t++e +s+errkl++++Ga++++t+ + + +g+++kaeel ++++  ++l +qfe +an + h+ tt++eil+d++++ ld  v+g+GtGGt  Gvg++lk  +pd+k+v +eP+++ +l+ g                   +h iqG++++fiPkvL+    ++++de i++ d  a++++++la+ +Gil+Gis+Ga+++aa++ akk+ ++ +++++lpdtgerYlst+Lf
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKINeKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDKGSGMVRKAEELCAQHG--WFLCHQFETEANWKFHEVTTGQEILNDFKDEkLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGiatdrnddgspsathpAFAAHPIQGWTPDFIPKVLEdgmkRDLMDEFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAPEGSVLLAMLPDTGERYLSTPLF 330
                 689***********877888999************************************************************************************************************..99*************************97655*****************************************9999***********99888899**************974444799*******************************************************************9 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.3   0.0  1.5e-103  3.4e-101       1     299 []      13     330 ..      13     330 .. 0.96

  Alignments for each domain:
  == domain 1    score: 336.3 bits;  conditional E-value: 1.5e-103
   TIGR01136   1 ieeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgk.idafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg................kpgphkiqgigagfiPkild....eelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                 i+e+iGntP+v++n   +    ++++K+E++nP +SvKdR al++i+dAe++gl+k g+ti+eatSGNtGia+Am +a++gyk ++++ e +s+ERrkl++++Ga++++t+++++ +g+++ka+el ++++  ++l +qfe +aN++ H+ ttg+Eil+d++++ +d  v+g+GtgGt  Gvg++lk  +p+vkiv +eP+++ +l++g                   +h iqg++++fiPk+l+    ++l+de i++ d+ a++++++la+++gil+GiS Ga+++aa++ akk+  e+++++++lpd+gerYLst+lf
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKINeKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDKGSGMVRKAEELCAQHG--WFLCHQFETEANWKFHEVTTGQEILNDFKDEkLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGiatdrnddgspsathpAFAAHPIQGWTPDFIPKVLEdgmkRDLMDEFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAP-EGSVLLAMLPDTGERYLSTPLF 330
                 689***********75566679***********************************************************************************************************87..99*************************98766*****************************************9999***********99888899**************974443689*********************************************9.79******************99 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0     8e-72   1.8e-69       4     308 ..      12     327 ..       9     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 232.4 bits;  conditional E-value: 8e-72
   TIGR01137   4 nildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg.kldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktek..........tdykveGiGydfiPtvld....rkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltk 308
                 +i + iGntP+v++n+  +    +++ak+effn+  svkdr+al +iedae++G +k gdt++e tsGntGi +a+ +a++Gykc+i++ e  s e++++++ lGa +++tP     d+    +  a+ l  +  g +   q++   n + h +ttg+eil++ ++ kld  v+g GtGGt  G+++ lk+  ++v+iv a+Pe + +la +   ++ +           + + ++G   dfiP+vl+    r+++de+i+  dk +  m+++l++ +g+l g s G+++ aa+++a+ +  e+ v++++lpd++  yl+ 
  MMETSP1174-20130828|9602_1  12 DITETIGNTPVVKINEKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPK---KDKGSGMVRKAEELCAQ-HGWFLCHQFETEANWKFHEVTTGQEILNDFKDeKLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAgLLASGIATDRNDDgspsathpafAAHPIQGWTPDFIPKVLEdgmkRDLMDEFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAK-KAPEGSVLLAMLPDTGERYLST 327
                 799***********9766666679****************************************************************************************6...58889999999999876.688899***********************8766************************************85427777654443332111111111235679***********96555589********************************************.899999*************985 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.0   6.8e-53   1.5e-50       2     202 ..      13     214 ..      12     226 .. 0.95
   2 !   48.9   0.0     6e-16   1.4e-13     204     290 .]     239     330 ..     232     330 .. 0.88

  Alignments for each domain:
  == domain 1    score: 170.2 bits;  conditional E-value: 6.8e-53
   TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeeklldqfnnpdnpkahytstGieiwqqtkG.rithfvsslGttGtimGvsrflkeqnpavqivGlqpaegs 202
                 i++++Gntp+v+++   +  + ++++k e +np  svkdr al++i +ae++G ik Gd+++eatsGntGia+am++a +Gyk  + + +  s er++ ++  Ga++i++ k++   G +  a+el  +    l  qf+  +n+k h  +tG ei +  k  ++ ++v++ Gt+Gt  Gv++ lk   p+v+iv  +p+++ 
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKINEKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDKGSGMVRKAEELCAQHGWFLCHQFETEANWKFHEVTTGQEILNDFKDeKLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAG 214
                 789**********9999999***********************************************************************************************************99999999**********************987527999****************************99998764 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 6e-16
   TIGR01138 204 ieGlrrieseylpgifda....slvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdrylstgvf 290
                  + ++ +  ++ p++ ++     l+d+ +++  + a  + +ela+ +gi+ G+s G++++aa++ a++ ++ +v++a+++d G+rylst +f
  MMETSP1174-20130828|9602_1 239 AHPIQGWTPDFIPKVLEDgmkrDLMDEFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAPEgSVLLAMLPDTGERYLSTPLF 330
                 5567889999999998762222579******************************************99986899**************987 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   0.0   5.6e-59   1.3e-56       1     297 [.      13     327 ..      13     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 189.8 bits;  conditional E-value: 5.6e-59
   TIGR03945   1 ilsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk..evdylfvgvsttGtlaGvarrlrekspevkvv..............avDa..vGSvifggepgk.RlipGlGasvvpell....deslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldt 297
                 i+++igntp+vk+++ ++    +++aK+E +np  SvKdr Ala++e+a+++g ik g+ti+E +SGn +ia+am+ca++G+k ++ +    s + +kl+r+lga+v v  +kd+ +g     +++ +el+a+ +  + + Q++ ean++ h  tt++eil+++k  ++dy + g +t+Gt +Gv ++l++ +p+vk+v              a D    GS    +++     i G      p++l    +++l+de++++++  +va+ +el++++gil+G S G++++a+ + ++k +egs  +a+lpD+GerYl+t
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKINEKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDKGSGM----VRKAEELCAQ-HGWFLCHQFETEANWKFHEVTTGQEILNDFKdeKLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVlaepeqagllasgiATDRndDGSPSATHPAFAaHPIQGWTPDFIPKVLedgmKRDLMDEFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAPEGSVLLAMLPDTGERYLST 327
                 5789***********9999999********************************************************************************************97776....5688999987.678999************************9999******************************8332222222222223332112443333333222568888888888886222257899**************************************************************98 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.3e-15   7.5e-13      10     214 ..      13     220 ..      10     227 .. 0.86
   2 ?   -0.8   0.0      0.47   1.1e+02     246     301 ..     260     316 ..     253     322 .. 0.73

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 3.3e-15
   TIGR02079  10 lkevvketPlqk.nerlsekykaeiylkredlqevrsyklrGaynklkqlsdeelek...gvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkasl 214
                 + e + +tP+ k ne++s   + +iy k e ++ + s k r a   ++   +++l k   ++v a++Gn    va  c + g k ++ +       +++ +++ G + i v    d       +a++ ++++g  l + f+ ++  +    t + eil+++++ek d+ + + G GG   Gv+  lk+  +  ki+  ePe a  l + +
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKiNEKIS-PPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKagdTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVI-VTPKKDKGSGMVRKAEELCAQHGWFLCHQFETEANWKfHEVTTGQEILNDFKDEKLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGI 220
                 667888999765266666.56789***********************99988876442227*******************99999998877777777778999998766.6667788888999******************998876257899************************************************998777665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.47
   TIGR02079 246 kkvvdevtlveegavcstildlynkegivaePa.Galsiaaleelseeikgktvvcv 301
                 ++++de +++++    +   +l +++gi+   + Ga   aa+e +++  +g+ ++++
  MMETSP1174-20130828|9602_1 260 RDLMDEFIQIPDKVAVAMSQELAQTQGILTGISgGATMWAAVEAAKKAPEGSVLLAM 316
                 567888888887655555578999999998765157777888888888888777766 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     7e-15   1.6e-12      13     297 ..      13     312 ..      10     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 7e-15
   TIGR02991  13 iagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdae..ra.aGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaq...eeverlvkerGlvmlppfdhadi.vaGqGtlglevveqvpdlal..vlvplsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaGrpvl...veelptladslGGGiG...ldnrvtfalckelldeivllsedeiaagirhayaeereiveG..aGavGiaallaGkikvkGpi 297
                 i+  + +tp+v+ +   +  G+ +  k e  ++  s k r a   +   +++   +a   +v a++Gn G a+a   ++ g ++vi ++e   +++ + +r+lGa+v  v   +d+     ++ e l +++G  +   f+ ++     + t g e++++  d +l   +     GG   Gv+ a+k  +p+++++    e+   + + +++ r       + +p++a     G     +   +   + ++l+de + +  d++a ++    a+ + i+ G   Ga   aa+ a k + +G +
  MMETSP1174-20130828|9602_1  13 ITETIGNTPVVKINEKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGliKAgDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVI-VTPKKDKGSgmvRKAEELCAQHGWFLCHQFETEANwKFHEVTTGQEILNDFKDEKLdyWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGIATDRNDDgspSATHPAFAAHPIQGWTpdfIPKVLEDGMKRDLMDEFIQIP-DKVAVAMSQELAQTQGILTGisGGATMWAAVEAAKKAPEGSV 312
                 6678899*****9999999***********************999987766532233146999*******************************************95.55556655412267799*************987651567899********99865421566677899*****************998888887777777766554331114456666655444444122345566789999999999986.689999999999999999985447888899999998888776 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.4e-15   1.2e-12      15     269 ..      34     305 ..      24     318 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.4e-15
   TIGR01127  15 aevylklenlqktGsfkirGalnkiaklseeek.krG..vvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGad..fDeayklaeelaeeegrvfvhafdDefvia.GqGtlgleiledlpd..vdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkika....vesvktiaDGiavkkpg....dltfeivkelvDevvavdeeeiakaillLlerakivaeg..aGavgvaavleek 269
                   +y k e +    s k r al  i+ + +++  k+G  +v a++Gn    va+   + g k++i + e   +++ k  + +Ga+vi+  ++       + aeel +++g  + h f+ e      + t g eil+d  d  +d  +   G GG   Gv  a+k+  p+vk++  e e+a  l+  +  ++  +    +++    a  i   +p+     l   + ++l+De++++ + ++a a+   l +++ +  g   Ga+  aav + k
  MMETSP1174-20130828|9602_1  34 RTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLiKAGdtIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKdkGSGMVRKAEELCAQHGWFLCHQFETEANWKfHEVTTGQEILNDFKDekLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGIATDRNDDgspsATHPAFAAHPIQGWTPDfipkVLEDGMKRDLMDEFIQIPD-KVAVAMSQELAQTQGILTGisGGATMWAAVEAAK 305
                 679**********************999998742333349***********************************************98765114456899*****************987654267899******9864449*************************************9999998887766511112333334555555544311113444566778888888865.5777877766666544443223555566665555 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.2e-13   1.2e-10      15     211 ..      17     220 ..       9     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.2e-13
   TIGR01124  15 avetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqk..a.kGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGe..nydeakakalelaqekgltfiapfddplvia.GqGtvalellrqvee.dldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqal 211
                   +tp+ k ++  +  + +++ k e  +p+ s k r a + + +  ++    a   ++ a++Gn    va+ +++ G k vi + e  +  + + ++  G++v++  +  + +    ka el  ++g    + f+ +        t + e+l+  ++ +ld+     G GG   Gv   +k+ +p++k++  e+e +  l+  +
  MMETSP1174-20130828|9602_1  17 IGNTPVVKINEKISPPGRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLikAgDTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKkdKGSGMVRKAEELCAQHGWFLCHQFETEANWKfHEVTTGQEILNDFKDeKLDYWVTGYGTGGTFHGVGKALKDGRPDVKIVLAEPEQAGLLASGI 220
                 5578887777777777889***********************98877754113146899*************************99999999999*********97651155667899*****************98776526789******997651677877889****************************998887665 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.1e-11   9.3e-09      25     106 ..      22     102 ..      13     127 .. 0.78
   2 ?   -0.9   0.0      0.67   1.5e+02     276     313 ..     269     306 ..     191     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 4.1e-11
   TIGR00260  25 lfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne....tvlcAtsGdtgaaaaealagkanvkvvvLyPk 106
                 +++ ++  ++ g + +y k +f +P  + KDr       +++ a ++g      t++ AtsG+tg a+a +l ++ + k+v+ + +
  MMETSP1174-20130828|9602_1  22 VVKINEKISPPG-RTIYAKCEFFNPLSSVKDRL---ALAIIEDAEQKGLIkagdTIVEATSGNTGIAVA-MLCAQRGYKCVITIAE 102
                 444444444444.59*****************8...556778888887767788***************.***********98754 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.67
   TIGR00260 276 vsdeeileaikklaeeegyllephtavavaalkklvek 313
                 + d+  +   ++la+++g+l+   +++++ a  + ++k
  MMETSP1174-20130828|9602_1 269 IPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKK 306
                 56666777788889999999988888877666555554 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   6.4e-08   1.5e-05     115     190 ..      72     149 ..      51     317 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.4e-08
   TIGR03528 115 tfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlny..ddavrlaakkaeekGwvvvqd 190
                 t v at Gn G  va    + g k+v+ +    + er++ +r  Ga++++t         vr a++ + ++Gw +   
  MMETSP1174-20130828|9602_1  72 TIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDkgSGMVRKAEELCAQHGWFLCHQ 149
                 7899**********************************************9765411468*************98753 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.3e-08   1.7e-05      95     170 ..      71     148 ..      48     163 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.3e-08
   TIGR01747  95 atfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlny..ddavrlankmaqekgwvlvq 170
                  t v at Gn G  va    + G k+v+ +    + er + ++  Ga+v++t         vr a++   ++gw l  
  MMETSP1174-20130828|9602_1  71 DTIVEATSGNTGIAVAMLCAQRGYKCVITIAEPFSVERRKLMRMLGAKVIVTPKKDkgSGMVRKAEELCAQHGWFLCH 148
                 37899**********************************************97654114689************8865 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05    0.0025     101     154 ..      72     122 ..      23     145 .. 0.79
   2 ?    1.7   0.0       0.1        23     150     186 ..     157     195 ..     150     206 .. 0.80
   3 ?    2.0   0.0     0.082        19     318     376 ..     265     323 ..     250     328 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   TIGR00263 101 iiaetGaGqhGvatataaallglecevymGae.dverqklnvfrmellgakvvpv 154
                  i e+ +G  G+a a+++a+ g +c++ + +   ver+kl    m++lgakv+  
  MMETSP1174-20130828|9602_1  72 TIVEATSGNTGIAVAMLCAQRGYKCVITIAEPfSVERRKL----MRMLGAKVIVT 122
                 588999*********************9987538999997....999****9854 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.1
   TIGR00263 150 kvvpvtsGsktlkdavnealrdWvtsved..thyvlGsa 186
                 k + vt+G++ l+d  +e l  Wvt + +  t++ +G a
  MMETSP1174-20130828|9602_1 157 KFHEVTTGQEILNDFKDEKLDYWVTGYGTggTFHGVGKA 195
                 6789********************986532266666655 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.082
   TIGR00263 318 eyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdk 376
                 e+ +i d+ a++  + l++++Gi++ +    ++ a+++ a+k ++ ++++  l   G++
  MMETSP1174-20130828|9602_1 265 EFIQIPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAPEGSVLLAMLPDTGER 323
                 577899*********************99999999999999999999988888777766 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06   0.00065      84     181 ..      33     130 ..      13     144 .. 0.80
   2 ?    1.5   0.0     0.093        21     228     293 ..     161     220 ..     155     260 .. 0.77
   3 ?   -1.0   0.0      0.54   1.2e+02     350     392 ..     269     311 ..     249     321 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.8e-06
   TIGR01415  84 kariyyksesvsptGshkintaiaqayyakkeGvkr...lvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevG 181
                    iy k e   p  s k   a+a +  a ++G+ +    + e+ +G  G a+++ +a  + k+ + +++  f   + r+ lm++ ga+vi +P +    G
  MMETSP1174-20130828|9602_1  33 GRTIYAKCEFFNPLSSVKDRLALAIIEDAEQKGLIKagdTIVEATSGNTGIAVAMLCAQRGYKCVITIAE-PFS--VERRKLMRMLGAKVIVTPKKDKGSG 130
                 3579**************************999643122678999*******************887665.554..679***************9876555 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.093
   TIGR01415 228 tviGleakkqleeagekPdvivgcvGGGsnfaglafPfvadkl.sGkedlkfiaaeskaaPkltkGe 293
                    G e+ + ++  +ek d+ v+  G G  f g+        l +G+ d+k++ ae+++a  l+ G 
  MMETSP1174-20130828|9602_1 161 VTTGQEILNDFK--DEKLDYWVTGYGTGGTFHGVG-----KALkDGRPDVKIVLAEPEQAGLLASGI 220
                 555666666554..557899999999999988864.....4444899************99999885 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.54
   TIGR01415 350 ydqeevfeaavlfakaeGivPaPesahaiavaideakkareeg 392
                 ++ + ++++++ +a+++Gi+       ++ +a++ akka+e++
  MMETSP1174-20130828|9602_1 269 IPDKVAVAMSQELAQTQGILTGISGGATMWAAVEAAKKAPEGS 311
                 5555666677777777777777777777777777777777664 PP

>> TIGR02839  spore_V_AE: stage V sporulation protein AE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-05     0.004      59     103 ..      44      90 ..      36      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-05
   TIGR02839  59 vPltgfGyslvkgaikevekkGllgiltGilelta..agisaailfg 103
                  Pl +    l+ + i+++e+kGl+++ + i+e+t+  +gi++a+l++
  MMETSP1174-20130828|9602_1  44 NPLSSVKDRLALAIIEDAEQKGLIKAGDTIVEATSgnTGIAVAMLCA 90 
                 59999999*************************98446899998875 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   3.9e-05     0.009     137     199 ..      61     125 ..      52     136 .. 0.70
   2 ?   -0.3   0.1      0.36        81      99     133 ..     265     299 ..     263     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.9e-05
   TIGR02823 137 lekagltpeegevlVtGAtGgVgslavalL.sklGyevvavtgkk...eeeeylkelGakevisree 199
                  e++gl  ++g+ +V   +G  + +ava+L +++Gy+ v +++     e++++++ lGak +++ ++
  MMETSP1174-20130828|9602_1  61 AEQKGL-IKAGDTIVEATSG-NTGIAVAMLcAQRGYKCVITIAEPfsvERRKLMRMLGAKVIVTPKK 125
                 344444.4568888885555.5568888875799***9988886422277799*******9998764 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.36
   TIGR02823  99 eyarvkadwvvplPeglslkeamilGtAGfTAaLs 133
                 e+++++ + +v++ ++l   + +  G++G   + +
  MMETSP1174-20130828|9602_1 265 EFIQIPDKVAVAMSQELAQTQGILTGISGGATMWA 299
                 678999999*****************998665544 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   8.1e-05     0.018     134     198 ..      64     130 ..      54     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.1e-05
   TIGR02824 134 laklkagetvLihggasGiGttaiqlakalgakvlvtag...sdekleaaekLGadvainyreedFve 198
                 ++ +kag+t ++ + ++  G +  +l+ + g+k+++t+    s e+ + ++ LGa+v +  +++    
  MMETSP1174-20130828|9602_1  64 KGLIKAGDT-IVEATSGNTGIAVAMLCAQRGYKCVITIAepfSVERRKLMRMLGAKVIVTPKKDKGSG 130
                 566777776.478888888999999*************834456888999*******99888776555 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013      0.03     115     188 ..      68     143 ..      40     147 .. 0.67
   2 ?   -3.5   0.0       3.2   7.3e+02     176     195 ..     274     295 ..     272     314 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
   TIGR03844 115 kgkkvlvvasaGntgrafaevsaltgkpvvlvv..PesavdrlwttedassvllvtvegdytdaiklaekiaalpG 188
                 k+++++v a++Gntg a a ++a+ g+  v+ +  P s   r  + +  ++v++   +   +  ++ ae+++a+ G
  MMETSP1174-20130828|9602_1  68 KAGDTIVEATSGNTGIAVAMLCAQRGYKCVITIaePFSVERRKLMRMLGAKVIVTPKKDKGSGMVRKAEELCAQHG 143
                 46789999******************99888772233444444444445555444444444556677777777766 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.2
   TIGR03844 176 aiklaekiaalpGlvp..eGGa 195
                 a+++++++a+++G+++   GGa
  MMETSP1174-20130828|9602_1 274 AVAMSQELAQTQGILTgiSGGA 295
                 6677777777777765223555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 814.69
//
Query:       MMETSP1174-20130828|9609_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.51
# Mc/sec: 1599.40
//
Query:       MMETSP1174-20130828|9613_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 870.30
//
Query:       MMETSP1174-20130828|9614_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|9615_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1174-20130828|9617_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.9   0.1     0.0038   15.2   0.0    1.3  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD
     0.0066   14.4   0.3      0.019   12.9   0.1    1.8  2  TIGR00369 unchar_dom_1: uncharacterized domain 1


Domain annotation for each model (and alignments):
>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-06    0.0038      30     110 ..     125     208 ..     113     212 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.9e-06
   TIGR02286  30 hgtahGGllfalAD.....saFAlacNsageaaVAaevtidflrparagevlvAeAkevsrsgrtgvydvevrneegelvAlfrGk 110
                  g +hGG ++a+ D     +aF +   + g a+V  +++++  +p  +g vl    ++++r+grt   d  ++ e+g++ Al+ G 
  MMETSP1174-20130828|9617_1 125 AGYCHGGSMTAVLDdvlghTAFVTGGKTWGGATVTVNCKLT--KPIAVGSVLKVWGRVKERKGRTIFIDGGLEAEDGTVHALLDGV 208
                 489*******9777333335777777888899999999886..9*************************************99996 PP

>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.28   5.8e+02      36      59 ..      17      40 ..       9      64 .. 0.63
   2 !   12.9   0.1   9.2e-06     0.019      29      79 ..     122     173 ..     104     210 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.28
   TIGR00369 36 HGGvlaaLadtagslaaaltkeeg 59
                 GG +aaLa  ++    +  ke+g
  MMETSP1174-20130828|9617_1 17 VGGLSAALAVCLMRWQRKEAKEAG 40
                588888888666554444445555 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.2e-06
   TIGR00369  29 lqpigsvHGGvlaaLadtagslaaaltkeegkavvtlelnvnylrpareG.k 79 
                  +++g++HGG + a +d +    a++t  ++   +t+ +n +  +p+  G  
  MMETSP1174-20130828|9617_1 122 ESHAGYCHGGSMTAVLDDVLGHTAFVTGGKTWGGATVTVNCKLTKPIAVGsV 173
                 5689******999888877755555555555555666666667788888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|9619_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 586.03
//
Query:       MMETSP1174-20130828|9621_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076    9.1   3.8      0.079    9.1   2.7    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
          8    3.3  21.6        1.7    5.5  10.0    2.1  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.7   3.8e-05     0.079     185     357 ..     185     276 ..      18     320 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3.8e-05
   TIGR00934 185 dfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldr 357
                 ++ ++  + ++ kr ++++ + ++++e+ k+ +  +e+i+ +r+d++ ++++s+++  e+  k+ e+++i   + +r  ++l+                                                                                 + +++++++
  MMETSP1174-20130828|9621_1 185 KVAQQEHREDVAKRRQEEEEKKRKEEEELKARMEGQEQIRIKRVDQTGKEETSAKARQEELDKNFEENKIYTIQQERVRQKLK---------------------------------------------------------------------------------EGEESSVAD 276
                 22222233334444444444444444444444455555555555555555555555555555555555444444444444444.................................................................................444444433 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4    0.0082        17      26     108 ..      17     110 ..       2     121 .. 0.46
   2 ?    5.5  10.0   0.00082       1.7       3     100 ..     172     276 ..     170     297 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0082
   TIGR01554  26 eaeeekkekdalkaeidkleaeierleea........aaeeeakeaasgeagkeeeeeeeakeeaaea...fra..ylrrgddalaeeakalstgt 108
                 ++++ kk      ++i++ +a+ ++ +++        +++++++  +  ++++++e  +ea+e  + a   f +  +++ g +++ +++   +++t
  MMETSP1174-20130828|9621_1  17 WIDALKKLG--SAKKIKDAQAQAQEYQDQltawktwkNESRAKRTVNLLPKQQGQEGFSEADEILRLAvnnFAKekFVQEGGKSAVQTKHDVKMHT 110
                 444443322..4444444455555544445555444533333333333333333333333333333334443333477777776666644444444 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00082
   TIGR01554   3 elreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea...aaeeeakeaasgeagkeeeeeeeakeeaaea....fraylrrgddalaee 100
                 e+ + ++++ +++k ++++ +e+ a+ +++e++++++e ++l+a++e +e+    + +++ ke++s +a++ee +++ ++++  +     +r+ l+ g++++ ++
  MMETSP1174-20130828|9621_1 172 EISATVDDVHTAVKVAQQEHREDVAKRRQEEEEKKRKEEEELKARMEGQEQIrikRVDQTGKEETSAKARQEELDKNFEENKIYTIqqerVRQKLKEGEESSVAD 276
                 5677788899999999999999******************************88844444444444444444444444444433324455888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       455  (0.110922); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1074.77
//
Query:       MMETSP1174-20130828|9618_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 583.69
//
Query:       MMETSP1174-20130828|9623_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 958.14
//
Query:       MMETSP1174-20130828|9620_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.7   0.0     0.0042   14.0   0.0    1.3  1  TIGR00225 prc: C-terminal processing peptidase
     0.0037   14.0   0.1     0.0056   13.5   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-06    0.0042      51     104 ..      73     127 ..      56     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-06
   TIGR00225  51 eGiGiqvqmedd.eivivsplegsPAekagikpgDkIikvdgksvagmelddave 104
                   +G+++++++  + ++++  + sP e+ g+k++  Ii+++g +v ++  ++  e
  MMETSP1174-20130828|9620_1  73 RRLGMSLKENETgQAIVKATNHTSPSENKGVKVESAIIAINGVKVSSLAFEKTKE 127
                 55789998876658899999999**********************9999887655 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-06    0.0056     252     303 ..      78     131 ..      60     150 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-06
   TIGR02037 252 slglekakGalvaevlkgspAekaGlkaGDvilkvngkkiks..aadlreaigt 303
                 sl+ +++  a+v +  + sp+e+ G+k++  i+++ng k++s  +++ +e++++
  MMETSP1174-20130828|9620_1  78 SLKENETGQAIVKATNHTSPSENKGVKVESAIIAINGVKVSSlaFEKTKEMVQR 131
                 566666677888888899999999999999999999999987223455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 863.93
//
Query:       MMETSP1174-20130828|9626_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|9628_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|9630_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.1   0.0       0.24    8.2   0.0    2.4  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   5.9e-05      0.24      44     127 ..       8     104 ..       3     113 .. 0.71
   2 !    6.3   0.0   0.00022      0.91     268     300 ..     382     414 ..     376     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 5.9e-05
   TIGR01293  44 ginlfdiaevyaagkaetelgkilk...kkgwrrssyvittkifw....ggkaeeerglsrkhii......eglkaslerlqleyvdivlanradps 127
                 gi ++d++  y  g +e+++gk+l+        r  + + +k  +    g+++ ++ g +  h i      e l  sl+rl+  ++d++l++ ++ +
  MMETSP1174-20130828|9630_1   8 GITVIDTSASYGGGDSERMIGKVLEglrDDLPARDRLTVVSKFGFcldsGSTNPSDTGRTLEHCIhpdfmhEELSKSLKRLRTGHLDVLLVESPEEM 104
                 999********************86221344567777777776432332334445566666665544334478999999999999999999877655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00022
   TIGR01293 268 aqlaiawslrsegvssvllgassaeqlmeslgs 300
                   +a+ w+l++ g+  v lg++  +q+ + l  
  MMETSP1174-20130828|9630_1 382 QHFALEWALKQSGIAHVSLGMTHEDQVDDALAI 414
                 567999********************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1063.53
//
Query:       MMETSP1174-20130828|9629_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-62  208.2   0.1    6.6e-62  207.6   0.1    1.2  1  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.6   0.1   1.6e-65   6.6e-62       1     182 [.     211     404 ..     211     411 .. 0.95

  Alignments for each domain:
  == domain 1    score: 207.6 bits;  conditional E-value: 1.6e-65
   TIGR00691   1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFgeevaeLvdgvtKitklkkksrqe............aqaetfrkiilamaqdirvlviKlaDrlhNmrtleaLpkekqkriaketleiyaplAeRlGissiKteLedlsFkvlypkeYeeikelvkekkk 182
                 Al +a+++He+Q+R+sGe y++HP+ +a++lae++ D  tv+A+LLHDvvEDTd ++e++ ++Fg++v ++v gvt ++  +                  +++ + ++++lam  d +v+++KlaDr+hNmrtl+a+p+ek++++a+etle+++p+A+ +G++++ +eL dls ++l  + Y++i++  +++++
  MMETSP1174-20130828|9629_1 211 ALAFAEDAHEGQFRRSGEEYVVHPIETACILAEMRADVDTVVAGLLHDVVEDTDWSTEQLCARFGASVSNIVAGVTDVDATHPAFSDDvaqppaamtkeeKDLFNKKRLLLAMGADLNVVLVKLADRVHNMRTLDAMPPEKRAKKARETLELFVPVAHAVGVAPLEQELRDLSARHLGDDAYNVIQQQQQQQQQ 404
                 899****************************************************************************998654444468999999998999999********************************************************************************98877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1418.28
//
Query:       MMETSP1174-20130828|9631_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-35  117.7   0.0    1.3e-34  116.9   0.0    1.4  1  TIGR00607 rad52: recombination protein rad52
  ------ inclusion threshold ------
      0.014   11.9  10.0      0.019   11.5   7.0    1.1  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family
          4    3.5  18.9        5.2    3.2  13.1    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        7.6    2.7  17.7        9.3    2.4  12.3    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        8.1    3.3  26.0        9.9    3.0  18.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR00607  rad52: recombination protein rad52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   1.6e-37   1.3e-34       2     131 ..       2     130 ..       1     142 [. 0.94

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 1.6e-37
   TIGR00607   2 iqkalrkklGpeyiskrvggGgskvayiegwkvielaneifGynGwsssiksvnvdfvdenkgkfsvGvsaivrvtlkdGsyhedvGyGsvenlrskalalekakkeavtdalkralrsfGnalGnclyd 131
                 iq++l+  +  e++ +r + Gg++v yieg   +e+an +fG+nGw ssi +++v+  +++  ++  Gv aivrv+lk+G+ h+dvG Gs  + + +  a+e akk avtda kralr+fG+ lGn l  
  MMETSP1174-20130828|9631_1   2 IQQHLQTGVPREFLKSRPCRGGKRVDYIEGGTQMEIANSLFGHNGWRSSILQITVEVCEQQGAHWVYGVFAIVRVQLKSGAAHDDVGCGSGRD-KDRMKAMEAAKKGAVTDARKRALRCFGELLGNSLKH 130
                 8999999999*******************************************************************************9754.6677889*************************9965 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   7.0   2.3e-05     0.019     239     355 ..     151     266 ..     124     278 .. 0.56

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.3e-05
   TIGR03895 239 lveekeveeasgaevesaaeseteaipaaeaeeaasvsiesaaaaekaakaaaeielsaaalaaaissaavsakasegvtssaassel.aeaqlvYalGtlgyDfGtEaRrDsikqlm 355
                 ++e ++++++++++ ++++++++++ + ++++++ ++ +++ ++ + + +++ + +++ a ++++++++++ +   ++vts +++    +++q  Y l t+   +G+E   +s +  m
  MMETSP1174-20130828|9631_1 151 ASEVRHIQNQQNQNQQNQNQHNQNQQNQNQQSHPEQHPNQVKQQ-QLKEQQERNRQAALARQKQNLHRQQPMQ-KRNSVTSLQKPCTDdQQQQFDYNLHTVSDAYGNEVDSESDNLAM 266
                 33444444444444433333333333333333333333333222.2222333333344444455566666654.588888888886443599999*************8666644444 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  13.1    0.0064       5.2     347     416 ..     158     229 ..      98     291 .. 0.45

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0064
   TIGR02442 347 ekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar..argasGrrsktrs 416
                 +++++++q++++++++++++++++++ e+++++ ++++l+++++  r  +la +k++  +++ + +r+ ++s
  MMETSP1174-20130828|9631_1 158 QNQQNQNQQNQNQHNQNQQNQNQQSHPEQHPNQVKQQQLKEQQERNRQAALARQKQNlhRQQPMQKRNSVTS 229
                 111111111111111111111122222222222222222222222222222222221111122222222222 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  12.3     0.011       9.3      78     189 ..     157     266 ..      94     292 .. 0.50

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
   TIGR03319  78 lqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekee.eleellkeqkeeLekisgltqeeAkellleeveeelkeeaaklikeieeeakeeadkkakeila 189
                 +q+++++ +q++++ ++++   ++++++ + +++  + k+++l+e++e + +  l++qk++L++   + + +  + l +   ++ +++    ++++ +   +e+d ++ ++ +
  MMETSP1174-20130828|9631_1 157 IQNQQNQNQQNQNQHNQNQ---QNQNQQSHPEQHPNQVKQQQLKEQQErNRQAALARQKQNLHRQQPMQKRNSVTSLQKPCTDDQQQQFDYNLHTVSDAYGNEVDSESDNLAM 266
                 2222222222222222222...2222222222222222233333332202233344444455555555555544444444444444444444444444444444433333322 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  18.0     0.012       9.9     434     547 ..     136     247 ..      91     288 .. 0.35

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.012
   TIGR01628 434 tqnpskpeapnalaqlaqqr.lqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpq.aqsknqmqqvvqdnnlpqkqatksn..nkestltaaalasaspseqkqvLGerLf 547
                 +q+ps++e+++   + +++r  q+q+++n +n+n+  ++++n++qq   ++++++  ++q + +q++n      ++ +l  ++++ ++    +++ ++++l+    ++q+q    +L+
  MMETSP1174-20130828|9631_1 136 SQMPSTDEHATPPPPASEVRhIQNQQNQNQQNQNQHNQNQQNQNQQSHPEQHPNQVKQQQLKeQQERN------RQAALARQKQNLHRqqPMQKRNSVTSLQKPCTDDQQQQFDYNLH 247
                 22222222222222222222111111111111111112222222222222222111111111111111......11111111111111001111112222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       595  (0.145051); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 636.14
//
Query:       MMETSP1174-20130828|9635_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|9636_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|9637_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 507.33
//
Query:       MMETSP1174-20130828|9639_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 361.91
//
Query:       MMETSP1174-20130828|9638_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 963.24
//
Query:       MMETSP1174-20130828|9640_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 470.21
//
Query:       MMETSP1174-20130828|9643_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-22   75.9   0.0    7.2e-22   75.5   0.0    1.1  1  TIGR00272 DPH2: diphthamide biosynthesis protein 2
    1.9e-15   54.9   0.0    2.5e-15   54.5   0.0    1.2  1  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    9.7e-05   19.5   0.0    0.00014   19.0   0.0    1.2  1  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2


Domain annotation for each model (and alignments):
>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   5.3e-25   7.2e-22     307     496 ..       1     189 [.       1     190 [. 0.75

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 5.3e-25
   TIGR00272 307 ikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvidskefyrPivtpfelelaLseevtWaaDFrlsidevekleegketkepsevsdeaepeFslisGkvvsssrrlralt.lekleaednddska........svekrtasslvvkGvvstaaaylqdrsWkGLnddvdeaeddakleeGrsGiakGYsg 496
                 i + g+k Y +a G +n vakl+nf +++ +v++a  e s+++s++f  P+vtp ele+aL     W+  +   +  ++  +   + + ++   d  ep Fsl +G ++++ +   a t  + l+ e n+ + +        s+e   as  ++    s+aaa+l +rs++GL++ +   e +    eGrsGia  Y+ 
  MMETSP1174-20130828|9643_1   1 IEESGRKYYRFALGTPN-VAKLSNFAEVEAYVIVASDEISLLNSRDFAVPVVTPLELEIALGVR-EWTGFYSTNFRDLLLHSSS-QLQDSD---D--EPVFSLTTGTLTATNK-SEACTpDHLLNGETNGGGVEtpaphphlSLELAVASETTLSTYRSPAAAFLAKRSYQGLEQRLGLDESH-LATEGRSGIAADYGE 189
                 56789************.7******************************************864.6988776666655544333.333333...4..5***********6655.5555514556778888776511112222445555566666677799*************8887666544.457********9985 PP

>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.8e-18   2.5e-15     261     320 .]       1      60 [.       1      60 [. 0.98

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.8e-18
   TIGR00322 261 lkkagkkaytilvgeinpakLanfpeiDafVvvaCprlslddskefekpvltpyEleial 320
                 ++++g+k+y +++g +n+akL nf+e++a+V+va  ++sl++s++f  pv+tp Eleial
  MMETSP1174-20130828|9643_1   1 IEESGRKYYRFALGTPNVAKLSNFAEVEAYVIVASDEISLLNSRDFAVPVVTPLELEIAL 60 
                 6899******************************************************97 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     1e-07   0.00014     239     300 ..       2      64 ..       1      70 [. 0.92

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1e-07
   TIGR03682 239 eekgkeallvlldeispdkllnl.eldavvvtaCPRiaiDdaerfkkpvltpeEleivlgkrk 300
                 ee g++++  +l   +  kl n+ e++a+v++a   i++ +++ f +pv+tp Elei+lg r+
  MMETSP1174-20130828|9643_1   2 EESGRKYYRFALGTPNVAKLSNFaEVEAYVIVASDEISLLNSRDFAVPVVTPLELEIALGVRE 64 
                 67899999999999999******88**********************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|9642_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       544  (0.132618); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 874.81
//
Query:       MMETSP1174-20130828|9647_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 499.67
//
Query:       MMETSP1174-20130828|9644_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-13   46.4   0.0    1.9e-12   45.2   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.019   12.9   0.0      0.039   11.9   0.0    1.4  1  TIGR02373 photo_yellow: photoactive yellow protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   9.4e-16   1.9e-12      18     111 ..       2      97 ..       1     100 [. 0.88

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 9.4e-16
   TIGR00229  18 iivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird..aggelgvvg 111
                 i+ vd++G ++++N+a+++++G+ + +++Gr++ + li++e r++v++++e++l+g  e+   e+ + +++G ++ + ++ +p rd  +gg  ++vg
  MMETSP1174-20130828|9644_1   2 IVGVDLRGAVTEWNEAAAKVTGHPRRDVMGRSLVQdLIVPEGRSAVQRVLEKALQGL-ETPMVEFPFMTSNGATVEILLNATPRRDhpQGGAGHIVG 97 
                 6779*******************************9*******************87.6666667778*****************876666555555 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05     0.039      30      95 ..       3      67 ..       2      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
   TIGR02373 30 iqldesGrilkynkaegelaGrdPekviGknffkevaPctdskefsGrfkegvasGdlnamldyvf 95
                + +d  G ++++n+a ++++G   ++v+G+ + +++    +++    r +e   +G    m+++ f
  MMETSP1174-20130828|9644_1  3 VGVDLRGAVTEWNEAAAKVTGHPRRDVMGRSLVQDLIV-PEGRSAVQRVLEKALQGLETPMVEFPF 67
                56899****************************99753.344445556666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1301.89
//
Query:       MMETSP1174-20130828|9651_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 599.61
//
Query:       MMETSP1174-20130828|9650_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-18   62.3   0.6    1.2e-17   61.7   0.4    1.2  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.4   2.8e-21   1.2e-17      61     222 ..       2     168 ..       1     181 [. 0.80

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.8e-21
   TIGR02475  61 eeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqwpe.irsrv.tvdgvvavvdsaavaaGrfaedldalea.qr...aadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevda.evll 222
                 e++vel+nGcicc    d+l  +++l a + + d i++e++ ++ p  + +af+  e i   +    +v ++ d+  v+  +  e+++++++ +r   ++d+    e+ +  l+  q+ cad++ lnkadl++ + l+ ++a+i   l+ + +++ +++G+v+  +vll
  MMETSP1174-20130828|9650_1   2 EKLVELSNGCICCNRRGDLLAEIRELAAERGRFDVIVVESTRVSDPAEVAAAFDRDEkIEGLAeNFASVATMSDGGLVTHEHH-EHHEHVDDaERercEGDARKAAEENFVGLLVSQVECADVICLNKADLASREHLDLAHATILR-LNPNADVLPTTHGNVPLgKVLL 168
                 689**************************************************998724443314678889999988877654.4444444313311256888888899999999***************************9986.556679*********9634554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1740.17
//
Query:       MMETSP1174-20130828|9652_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   22.2   0.0    0.00086   15.3   0.0    2.4  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0   0.00026       1.1     131     151 ..       5      25 ..       2      36 .. 0.86
   2 !   15.3   0.0   2.1e-07   0.00086     123     155 ..      32      63 ..      26      73 .. 0.83
   3 ?   -1.0   0.0     0.017        71     125     141 ..      68      84 ..      62      85 .] 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00026
   TIGR00870 131 gitalilAihkqnyeivklLl 151
                 g t+l +A++k n+ +v+ L 
  MMETSP1174-20130828|9652_1   5 GCTPLWIAAQKGNLDVVRYLA 25 
                 89***************9985 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2.1e-07
   TIGR00870 123 estseftkgitalilAihkqnyeivklLlekga 155
                  +  +   g t+l++A+h+ ++ +++ L+   a
  MMETSP1174-20130828|9652_1  32 VNQARLNDGWTPLHIAAHNGKLDVIRFLVSE-A 63 
                 56677889********************964.4 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.017
   TIGR00870 125 tseftkgitalilAihk 141
                 t + ++g t+l +A+++
  MMETSP1174-20130828|9652_1  68 TLRTSEGYTPLRIAAEH 84 
                 557789********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|9653_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 832.55
//
Query:       MMETSP1174-20130828|9655_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|9659_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 643.95
//
Query:       MMETSP1174-20130828|9658_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 804.31
//
Query:       MMETSP1174-20130828|9660_1  [L=1001]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|9663_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|9666_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 944.23
//
Query:       MMETSP1174-20130828|9665_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1470.74
//
Query:       MMETSP1174-20130828|9669_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|9668_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1198.32
//
Query:       MMETSP1174-20130828|9670_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 255.98
//
Query:       MMETSP1174-20130828|9671_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 963.83
//
Query:       MMETSP1174-20130828|9675_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-134  446.8   0.0   3.4e-134  446.5   0.0    1.0  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
    1.2e-11   42.3   0.0    1.3e-10   38.9   0.0    2.4  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    1.4e-10   38.7   0.0    4.1e-10   37.2   0.0    1.7  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    3.3e-05   21.7   0.0     0.0002   19.2   0.0    2.2  3  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
  ------ inclusion threshold ------
       0.04    9.4   0.0      0.056    8.9   0.0    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1


Domain annotation for each model (and alignments):
>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.5   0.0  4.2e-137  3.4e-134     309     663 .]       2     364 ..       1     364 [. 0.93

  Alignments for each domain:
  == domain 1    score: 446.5 bits;  conditional E-value: 4.2e-137
   TIGR01381 309 rlaersvdlnlkllkWrvlPeldlevlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcle.......ggegkaetaakalkrifPaieasgvrlevPmpGhpisekeekelledikrleelikehdvvfllldsrearWlPtvlcaradkiaisaalGfdsylvlrhGagrseessdveesdsvntsrlgCyfCndvvaPkdsttdrtldqqCtvtrPGvaliasalavellvsvlqhPlk..........sklpaslddnatvlGilPhqirGflsrfeqikleakafesCsaCseavlaeykergwkfvkdalneptyledltGltelkkeaevaeldfedfesdddd 663
                  la ++ dlnlkl++Wr++P+l+ e l+s+ +lllGaGtlGc var+l+G+G+++itfvdng+vsfsnPvrqsl++f dc +       gg+ kae+a+ al ri P+ e +g+++++PmpGhp+     ++ l+di++l  l+++hdv+fll+d+re+rWlPtv++a++dk+ +++alG+ds+++ r G   +        sd  + ++lgCy+CndvvaP++st  rtldqqCtv+rPG+a++asalavel vs+l hPl+            +  s  d + +lG+lPhq+rGfl+ +  +++ ++af  C+ C+  v + y+e+g +fv+ + ++ ++le + Gl++ +++ae  ++d  d +sddd+
  MMETSP1174-20130828|9675_1   2 TLAASAEDLNLKLMRWRLIPQLNTEKLKSTSCLLLGAGTLGCGVARCLIGWGMKRITFVDNGRVSFSNPVRQSLFEFADCVTsdgklgsGGRWKAEAAKSALMRISPSCEVEGHVVSIPMPGHPVAAAAREDTLKDIEKLDSLVRSHDVIFLLTDTRESRWLPTVMSATYDKMLLNVALGLDSFVIQRSGGRGTA-------SD--PSKKLGCYLCNDVVAPDNSTLMRTLDQQCTVARPGLAPVASALAVELCVSLLHHPLEhhapadptpsCPMNGSPSDADKPLGMLPHQLRGFLGTYGIVHPVGNAFSCCTGCAAPVCQAYQEQGPEFVLKVCDSVKHLEAVSGLDQFHRDAEDIDIDEWDENSDDDE 364
                 58999***************************************************************************84333333379*************************************************************************************************9965443.......33..669******************************************************66666666544445578899***********************************************************************999888887688899985 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.6e-13   1.3e-10      19      98 ..      25     114 ..      18     163 .. 0.76
   2 ?   -1.2   0.0      0.28   2.3e+02     121     155 ..     213     248 ..     208     259 .. 0.72

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.6e-13
   TIGR02355  19 qeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlh.......sdani...gqpkvesakdaleelnphieiet 98 
                  eklk+++ l++G+G lGc  ++ l   G+ r+t+vd   v+ sn  rq l        sd ++   g+ k e+ak+al ++ p  e+e 
  MMETSP1174-20130828|9675_1  25 TEKLKSTSCLLLGAGTLGCGVARCLIGWGMKRITFVDNGRVSFSNPVRQSLFefadcvtSDGKLgsgGRWKAEAAKSALMRISPSCEVEG 114
                 59***********************************************9972222222455553334679*************999873 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.28
   TIGR02355 121 ctdnvevrnqlnrqcfaakvplvs.gaairleGqvs 155
                 + dn  +   l++qc  a+  l   ++a+ +e  vs
  MMETSP1174-20130828|9675_1 213 APDNSTLMRTLDQQCTVARPGLAPvASALAVELCVS 248
                 6799999999*****998876653145566665555 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   5.1e-13   4.1e-10      16      95 ..      25     114 ..      15     121 .. 0.85
   2 ?   -2.0   0.0      0.51   4.2e+02     102     131 ..     138     167 ..     126     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.1e-13
   TIGR02356  16 qqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvk..........rpKveaaaerlkelnseirvea 95 
                  +kl++++ l++GaG+Lg+ va+ l++ G+ +i+ vD+ +v++sN  rq lf+ +d            r K+eaa+++l ++ ++ +ve+
  MMETSP1174-20130828|9675_1  25 TEKLKSTSCLLLGAGTLGCGVARCLIGWGMKRITFVDNGRVSFSNPVRQSLFEFADCVtsdgklgsggRWKAEAAKSALMRISPSCEVEG 114
                 589*************************************************98886434444556667788888888888888877765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.51
   TIGR02356 102 aenleelieqvdlvlDctDnfktrylinda 131
                  e+l +l+++ d++   tD  + r+l   +
  MMETSP1174-20130828|9675_1 138 IEKLDSLVRSHDVIFLLTDTRESRWLPTVM 167
                 577888999999999999988888775544 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.4e-07    0.0002       9      93 ..      17     113 ..       8     121 .. 0.75
   2 ?   -1.5   0.0      0.53   4.3e+02     101     138 ..     138     174 ..     126     187 .. 0.68
   3 ?   -2.4   0.0      0.99   8.1e+02      16      40 ..     220     245 ..     208     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.4e-07
   TIGR02354   9 arhtekv.veklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqyk.....vsdv........GkkktealkeqiseinPyveie 93 
                  r  +++  eklk +s  + G G lG  va  l   G++++ +vd  +v  sn  rq  +     v           G+ k+ea k  + +i+P  e+e
  MMETSP1174-20130828|9675_1  17 WRLIPQLnTEKLKSTSCLLLGAGTLGCGVARCLIGWGMKRITFVDNGRVSFSNPVRQSLFefadcV--TsdgklgsgGRWKAEAAKSALMRISPSCEVE 113
                 55566662589**********************************************864222221..0222222225678888888888888888877 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.53
   TIGR02354 101 eenleklfkdadivieafdnaeakallvnavlekykdk 138
                  e l++l++  d++    d+ e++ l    +  +y + 
  MMETSP1174-20130828|9675_1 138 IEKLDSLVRSHDVIFLLTDTRESRWLP-TVMSATYDKM 174
                 578999999999999999988877553.2333344333 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.99
   TIGR02354  16 vekl.kkasvaiaGlGGlGsnvainl 40 
                 +  l ++++va  Gl  + s +a++l
  MMETSP1174-20130828|9675_1 220 MRTLdQQCTVARPGLAPVASALAVEL 245
                 44452467889899999999988887 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   6.8e-05     0.056     414     498 ..      25     114 ..      19     121 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 6.8e-05
   TIGR01408 414 qkkledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdi..........gkaksevaasavavinprlkiea 498
                 ++kl++ + +l+GaG++Gc + +   l+G +     +it  d+  +  sn  rq lf   d           g+ k+e+a sa + i p+ ++e 
  MMETSP1174-20130828|9675_1  25 TEKLKSTSCLLLGAGTLGCGVARC--LIGWGM---KRITFVDNGRVSFSNPVRQSLFEFADCvtsdgklgsgGRWKAEAAKSALMRISPSCEVEG 114
                 589999999999999999999775..566654...369999999999999999999875553222222222234566666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1100.91
//
Query:       MMETSP1174-20130828|9672_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-91  305.6  17.5    1.2e-81  272.7   3.4    2.0  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.5e-85  285.8  12.8    3.3e-85  284.7   1.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.8e-85  283.8  13.6    2.7e-74  248.5   1.2    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      1e-78  263.1   9.9    2.2e-78  262.0   6.9    1.4  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.3e-78  260.0   7.8    2.5e-73  245.3   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    2.3e-70  235.5  11.1    2.5e-67  225.5   1.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.9e-65  219.4   2.7    1.9e-65  219.4   1.9    2.1  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.2e-64  214.9   9.3    1.2e-63  213.7   6.4    1.5  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.8e-62  208.2  18.0    2.8e-60  202.4   1.6    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.4e-56  188.1   3.4    5.4e-56  188.1   2.4    1.6  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    9.5e-56  187.2  12.9    4.6e-53  178.4   0.8    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.8e-52  176.6   7.9    3.1e-51  172.6   0.0    2.1  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      8e-37  124.8   0.3    1.5e-36  123.9   0.2    1.4  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.7e-36  123.6   0.1    2.9e-36  122.9   0.1    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    8.3e-36  120.7   1.0    1.3e-35  120.1   0.7    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    9.2e-34  114.9   0.3    1.3e-33  114.4   0.2    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.4e-33  114.3   1.3    2.1e-33  113.8   0.4    1.6  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.2e-33  113.6   0.4    3.9e-33  112.8   0.3    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.1e-33  112.3   1.4    8.6e-33  111.6   1.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.7e-32  108.9   0.2    1.2e-31  108.0   0.1    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.8e-31  105.2   0.0    1.2e-30  104.4   0.0    1.4  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      7e-31  105.3   0.1    1.1e-30  104.6   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.9e-30  103.8   1.3    4.2e-30  102.6   0.9    1.6  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.5e-30  103.1   1.1      6e-30  102.3   0.8    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.2e-30  102.5   1.2    7.6e-30  101.9   0.8    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.6e-28   97.1   0.3    4.1e-28   96.4   0.2    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-27   93.6   0.4    4.3e-27   93.0   0.2    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.4e-27   93.1   2.4    5.9e-27   92.4   1.6    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.7e-27   92.8   1.0    7.3e-27   92.1   0.7    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.6e-26   90.3   0.2    4.3e-26   89.6   0.1    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.8e-25   87.7   0.1    3.1e-25   87.0   0.1    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.6e-24   84.5   0.3    2.7e-24   83.7   0.2    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.5e-24   83.6   0.3    5.1e-24   82.6   0.2    1.4  1  TIGR00955 3a01204: pigment precursor permease
    5.7e-24   81.5   1.0    4.9e-21   71.8   0.0    2.0  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      1e-23   81.6   0.7    1.8e-23   80.8   0.5    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.3e-23   81.6   0.1    2.2e-23   80.8   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.3e-23   80.8   1.1    3.9e-23   80.0   0.8    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.4e-22   75.5   1.0    2.6e-21   73.9   0.7    1.8  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.4e-21   73.1   0.4    9.1e-21   72.3   0.3    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      1e-20   71.9   0.4    1.7e-20   71.1   0.3    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.2e-20   69.2   0.2    3.7e-19   66.9   0.1    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.1e-19   68.6   0.5    6.4e-19   66.1   0.4    2.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.3e-19   68.6   0.0    2.2e-19   67.9   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.9e-19   66.5   2.2    1.4e-18   65.2   1.5    1.6  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-18   64.9   0.5    1.7e-18   64.3   0.3    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.5e-18   64.3   1.4    2.5e-18   64.3   0.9    1.7  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.2e-17   61.4   0.0    2.3e-17   60.5   0.0    1.4  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.5e-17   61.4   0.6    2.4e-17   60.7   0.4    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.9e-17   60.7   0.7    6.2e-09   32.6   0.1    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.2e-17   61.4   0.2    4.8e-17   60.2   0.2    1.5  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.7e-17   60.5   0.0    9.9e-17   59.1   0.0    1.7  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.2e-17   58.6   0.0    1.8e-16   57.6   0.0    1.4  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    5.4e-15   53.5   0.0    1.1e-14   52.5   0.0    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.8e-14   48.0   0.4    7.1e-14   47.5   0.3    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    3.5e-13   46.8   0.2    8.1e-13   45.6   0.1    1.5  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.2e-12   43.3   2.5    2.8e-08   29.7   0.3    2.2  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.7e-05   20.4   0.2     0.0019   14.3   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   3.3   1.2e-12   8.9e-11      73     319 ..     255     502 ..     187     515 .. 0.81
   2 !  272.7   3.4   1.7e-83   1.2e-81     329     570 ..     557     798 ..     548     800 .. 0.98

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 1.2e-12
   TIGR02203  73 fvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsW..qltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekd 319
                  + + ++++vs+k +r++ + +f++l  l s+++  ++sg l ++ +  +    + + +++  +v  tl+ + l++ +l   +    +l+ ++ +   ++ ++v+++   +i ++ + + +e t    +++ +   vklfg +++e++ fd+   +++++++  + + ++ +     i s++l+ ++l + +  ++g++tvG++va+ + +++l  p   +    +++ +g++    v+++l ++p + 
  MMETSP1174-20130828|9672_1 255 EIKTVAFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVP-TLIELVLTASVLTKKFgpMYSLVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQIPFNFIGYTYQEVRQGFVDMGLVLEFLKTEPRVS 502
                 2467899*********************************99999999999998888888888876.55556666666666652257788777777777778999999899**********************************************************************************************************************************99988654 PP

  == domain 2    score: 272.7 bits;  conditional E-value: 1.7e-83
   TIGR02203 329 rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeL.larnGlYasLhkiqf 570
                  G+v f+nv+f yp++    ++++ ++v++Ge++alvG sGsGkst ++ll+R ++ dsG+il+D ++++d++L++LR++v +vsqd  LFd ++  n++Yg+l +++++eve+a++aa++++ v +  eG dt+vGe+g+ LsGG RqR+aiaR +l+   +++ De tsa+D   e  + +aL++  ++Rt +++ahRL ti +aDri v+ +Gk+ve+G he+L l+++G+Y +L ++q 
  MMETSP1174-20130828|9672_1 557 LGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRL-DASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLvLEADGHYRRLWDMQD 798
                 699*****************************************************************************************************.9******************************************************9*****************************************************************9689***********95 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.9      0.01      0.72      69     328 ..     248     508 ..     174     524 .. 0.71
   2 !  284.7   1.0   4.5e-87   3.3e-85     332     575 ..     554     797 ..     548     798 .. 0.97

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.01
   TIGR02204  69 lvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvr.klsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpk 328
                 +++a+   ++    +++ ++      + +f hl  l+++f+  n sg +       +   ++++   +   +  l+ l+ +  +l+     + slv la  +  +    +    r ++ r+      + +a+  +++++ ++v+ +++e++e++ fd+ + +  +   +++    +l      +   ++++++   a+ v +g+++ G++ +   + +     +  ++  + e+++    +  + e+lk+++ ++     k
  MMETSP1174-20130828|9672_1 248 VIVATLNEIKTVAFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVPTLIELVLTASVLTKKFGPMYSLVTLATFFGFVTFTSVITDWRmSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQIPFNFIGYTYQEVRQGFVDMGLVLEFLKTEPRVSDSPAVK 508
                 45555566677777788888888888889999999999999999988888778888888888877766666666777776666666666667777777665544444443333340344444555567899999************************9999999998888888888777666666677888888999************99988888889999999********9999999999**99999997543333 PP

  == domain 2    score: 284.7 bits;  conditional E-value: 4.5e-87
   TIGR02204 332 akvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLi.akggLyarlarLq 575
                 + + ge+ fe+v+f+yP+ +  + ++g+ ++v pGet+alvG sG+Gkst l+ll r +d  sG+il+d  ++++++ ++lrer+ +v+qd+alf +sv  niryGr+dasdeeveaaa+aa+ +  + + +eGydt +Gerg  LsGG +qr+aiar il+  +++L de tsa+d  +e  + qal+e+ ++rt +++ahrL t+++adri v+ +G++ve+G h++L+ ++ g y+rl  +q
  MMETSP1174-20130828|9672_1 554 TTLLGEVIFENVSFSYPNST-GTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVlEADGHYRRLWDMQ 797
                 6678**************99.678**************************************************************************************************************************************************************************************************************824568999998877 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   3.1   2.9e-13   2.1e-11     137     432 ..     187     492 ..     140     524 .. 0.74
   2 !  248.5   1.2   3.8e-76   2.7e-74     448     693 ..     552     798 ..     546     799 .. 0.98

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.9e-13
   TIGR01846 137 yrkllrevllislll.qllalvsPllfevvidkvlvhr.glstls......vlalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGd.tvarvreleqirefltgsaltvvldllfvvvflavmf.fyspkltlvvlvslviylllsvivspilrkrvedkf.eksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlG 432
                 + k l+ + l+sl+l +lla+  P+l++  +d + +   +  tl+      vl ++     v+  +l  ++t+ f++++++    ++  ++ hl al  ++      G  +va vr +   +  l    + vv  l+  v+  +v+   + p+  lv l ++  ++ + ++++   r  +  k    + e ++f+v+s++  e++k    e++ +r +++ la+  ++  + t +  + + + + i  +    l+   a++v kG ++vG++va+n l  ++  P   +   +q+ +q  + +  + 
  MMETSP1174-20130828|9672_1 187 QSKALLMLSLLSLFLgKLLAVQVPFLLQGAVDNINIADiSTLTLDgpkstlVLLICYGLARVIVATLNEIKTVAFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLlSVAYVRGVRGFQTILFQIVFAVVPTLIELVLTASVLTkKFGPMYSLVTLATFFGFVTFTSVIT-DWRMSIRRKLvGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQIPFNFIGYTYQEVRQGFVDMGLVL 492
                 33444444455666647899999*********99775423333332222114444444445666788999************99******************99999954899999998888888766665554444444444454424677777777777777766666665.56777777752578999*********************************9999998887766666666777777778888899********************99999998877777777666655554444 PP

  == domain 2    score: 248.5 bits;  conditional E-value: 3.8e-76
   TIGR01846 448 alpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                 + ++l G++ fen+ f y + + + ++ +++++++Ge+i +vG sGsGkst  +ll rl+  + Gr+l+d+ ++  +  + lr +vgvv q+  lf++s+  ni+ ++ ++s+e+v aaa+ a  h+ ++++k+Gy+t+vge+Ga lsGG rqr+a+ar+++  Pr+++ de tsa+d  +e  im+ l+e  ++rt +++ahrl t+ +adri v+ +Gk+ve+G+he+l+ + +g+y +l+  q 
  MMETSP1174-20130828|9672_1 552 TTTTLLGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVLEaDGHYRRLWDMQD 798
                 566789********************************************************************************************************************************************************************************************************************************987669*******9995 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.0   6.9     3e-80   2.2e-78     142     708 ..     177     793 ..     154     795 .. 0.88

  Alignments for each domain:
  == domain 1    score: 262.0 bits;  conditional E-value: 3e-80
   TIGR03796 142 lrallkrlkgsegallllvlaglll.vlpglvvpafskifvDeilveeaqewl.......rplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvl.dlvlvvf.yalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee..........eeekaaeseek....................................ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarL 708
                 l+ l+ r + +++all+l l +l+l  l ++ vp + +  vD+i + + ++++        +ll+   l+ ++ ++l+ ++++  +r+++k   +++  +++h+ +l  +f+    +g ++       +  +++  q++ +v+  l+ +v+   +++  + ++ +l+++a+ +  v+  ++++  r+   r+l       ++  + ++ + e++k  g e++  + +  y a++ +++ e   +  +l+v  +++ s+  +++++ ++  v +g++t+G +va ++ll +++ p + +  + +e+++   d+  + + l+++   + +           +         +                                    + L G+v ++nv+f+y +     i+++++++ pG+ +AlvG+sGsGkst  +l++ l++  sG+il+D+++ +++  + l++ + +v+qd  lf+ +v  n+       ++e+++ Aa+ A++h +++++++gy++++ e ga lsGG+rqR+ iAR++ + P +++ DE+tsa+D +tE  i+++l++  R+ tc++vaHRL ti  +d+i v+ +Gkvve G+He+l+   +g+Y+rL
  MMETSP1174-20130828|9672_1 177 LSYLWPRDDLQSKALLMLSLLSLFLgKLLAVQVPFLLQGAVDNINIADISTLTldgpkstLVLLICYGLARVIVATLNEIKTVAFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVpTLIELVLtASVLTKKFGPMYSLVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQIPFNFIGYTYQEVRQGFVDMGLVLEFLKTEPRVSDSPavkaketqttA---------AaatqlngardpraegaapaapptrggggvlaeegttTTLLGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEanRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVLeADGHYRRL 793
                 56799999999******999999884578889999***99**99888877654222221168999999***************************************************9976555555445555555555541555555504577789***********999999999******************************************99999999999999999999999999999999*******************************************99999999988888887776666655443322222222222210.........022345677778888999999999***********999*******************************************************************************************************999********************************************************************************95449************************************975489****98 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.1   9.2e-06   0.00066     160     471 ..     189     508 ..     135     515 .. 0.78
   2 !  245.3   0.0   3.5e-75   2.5e-73     473     710 ..     554     793 ..     547     794 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 9.2e-06
   TIGR00958 160 lkllllalvllvlsvlgevliPkytgrvidtl.lqdksveal...akaiflltllslaSsllaglrgGs...feyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllg.llifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalay.alylwttellgllilvlvLayGgqlvlegkvssgnLvsF..lLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtla 471
                 + ll+l l+ l+l  l  v +P+     +d + ++d s+ +l   +++++ll ++ la  ++a+l++     f+ ++++  +   + +f+ l   d  F+  n+ G l              l + v  ++ +l+ l+  + ++  +  p  +lvtl +    +  ++v+  +  ++ +++     + +    + ++  + V+ F++E++E + f e l ei+q n  ++    +l++ ++ ++  ++++l+L   +  v++g+++ gn+v+   lL qlq+    + +++ y+e+ ++      v e+l  +P+++ s   +
  MMETSP1174-20130828|9672_1 189 KALLMLSLLSLFLGKLLAVQVPFLLQGAVDNInIADISTLTLdgpKSTLVLLICYGLARVIVATLNEIKtvaFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVPTLIELVLtASVLTKKFGPMYSLVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIgVLNVGQSAIFSIGLTTLMLST-ASAVTKGTMTVGNIVAVnaLLIQLQIP--FNFIGYTYQEVRQGFVDMGLVLEFLKTEPRVSDSPAVK 508
                 45778888889999999999999876666665255666444422278899999998888777766542222266666666677778999999999999999999999999999999999999999999999999987650556666899*********999999999*******************************************************987777666551455666777888888887776.568***********9873366666665..667999*******9999999999999999998876655 PP

  == domain 2    score: 245.3 bits;  conditional E-value: 3.5e-75
   TIGR00958 473 knleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykql 710
                 ++l G+v F++VsFsYP+   +++ ++ t++++pGe++alVG sGsGKSt+  ll +l++ ++G++l+D+++++++    l+++v++V q+  lf +sv  Ni YG  ++ deev aaa+aa++h  ++  ++gydt vge+G  lsgG +qr+AiAR ++r Prv++ De tSA+D+++e  + +  ++ +++rt +++ahrL t+ +ad+i v+ +g+vve G+h++L+ + d  y++l
  MMETSP1174-20130828|9672_1 554 TTLLGEVIFENVSFSYPNSTGTQI-NGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQalKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVLEADgHYRRL 793
                 4688***************99997.9********************************************************************************************************************************************************9998777755666789************************************98877688876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   1.5e-05    0.0011     286     412 ..     337     463 ..     187     506 .. 0.77
   2 !  225.5   1.0   3.5e-69   2.5e-67     460     689 ..     554     783 ..     548     789 .. 0.97

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-05
   TIGR03375 286 ggplvlvplvavpl.vllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviL 412
                 g+   lv l+++   v  ++++  +++ ++ ++ +   ++++a+ v+s+++ e++k+ + e + ++ +++++a++++ +++      +l    +++  +    +++  + ++++g++t+G ++A++ L
  MMETSP1174-20130828|9672_1 337 GPMYSLVTLATFFGfVTFTSVITDWRM-SIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNAL 463
                 444455555554440444455555555.46677788899*****************************************99888888888888888999999999999***************9877 PP

  == domain 2    score: 225.5 bits;  conditional E-value: 3.5e-69
   TIGR03375 460 eklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevl 689
                 ++l Ge+ ++nvsf+Yp+++ + ++ v+++++pGe +a++G  GsGKst l+ll++l++ ++G++l+d+ +i+ +  +dlr+++g+v+qd++Lf  ++  Ni +g+  a+dee+ +aa++a v++ v ++++G+d+ +gerG+ LSgG rq va+aR +l+ p+++l DE tsa+D ++e  ++++Lke+ +++T v+v+Hr   +  +dri v+ +G++v +G ++ ++
  MMETSP1174-20130828|9672_1 554 TTLLGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLV 783
                 6788****************************************************************************************************************************************************************************************************************************987654 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.8       2.2   1.6e+02     196     278 ..     378     460 ..     192     476 .. 0.54
   2 !  219.4   1.9   2.6e-67   1.9e-65     329     567 ..     554     794 ..     547     810 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.2
   TIGR01192 196 khvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnriasti...slviilvigtvlvkkgelsvgeviaf 278
                 +   ds++n   v+ +   + e + + ++  ++   q  + + +++   ln   s+i    l ++++  +  v+kg ++vg+++a 
  MMETSP1174-20130828|9672_1 378 AFFVDSMANAEAVKLFGNEDHEERLFDEYLAEI--QQKNIENTYSI-GVLNVGQSAIfsiGLTTLMLSTASAVTKGTMTVGNIVAV 460
                 344677777777777766555555444444433..23334444443.455555554321145556666677899999999999875 PP

  == domain 2    score: 219.4 bits;  conditional E-value: 2.6e-67
   TIGR01192 329 knvkgavefrdisfefanssq.gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeli.qkdgrfakll 567
                 + + g+v f+++sf ++ns+   +  v++++  g+t+a+vg +g+gk+t + ll r++d +sg+ilid  +i+ +    lr+ +  v qd+ l+++s++ nir gr da+deev +aa+aa  +  +  + +gydt vgerg+ lsggerqr+aiar+il+   +++ de tsa+dv te+ + +a+   ++nrt  ++ahrl t+ +ad +  + +g+++e g  ++l+ + dg++ +l 
  MMETSP1174-20130828|9672_1 554 TTLLGEVIFENVSFSYPNSTGtQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVlEADGHYRRLW 794
                 5678**************98515788***************************************************************************************************************************************999***************************************************************9964789**99886 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.7   6.4   1.6e-65   1.2e-63       3     529 .]     190     768 ..     188     768 .. 0.82

  Alignments for each domain:
  == domain 1    score: 213.7 bits;  conditional E-value: 1.6e-65
   TIGR02857   3 ralalaallgvvsallliaqAallarvvssliaagealaellta...laalalvlllRallawlkeaaa...araaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadw..isalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaea....aaikriseeyrerT..mevLriAfLSslvLellat.lsvAlvAVyiGlrllagkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass..............................................slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                 + l+l++l  +++ ll++   +ll  +v+++ +a   + +l      l++l+   l+R ++a l+e      +r++ +  ++  + +++++ al  +   +++sg l+ + ++gv+  +  + +++ ++v  +++ lv+ a vlt+    +  l+ l t+     F  +i     +  rk   + ++  ++f+d ++  + +klfg +++e     + +++i+++  e+T  + vL +     + + l +  ls+A  AV+ G ++  g++  +++Ll+ l  P     +  +g  y + ++g   +  + e+l++e+    +++p+ +a+++                                              ++ +envs++y++++   +++v ++v+pge++alvGaSG+GKst l+ll ++ ++++G+il++++++++++ +++r++++ v+Q  +lf+++v  nir +r das++ev++a+++a++++ v   ++g++t++Gerga LSgG+rqR+a+Ar +lr  +++l DE t+++D +te  +++al+e+ ++rt ++vaHrl ++ +ad+i v+
  MMETSP1174-20130828|9672_1 190 ALLMLSLLSLFLGKLLAVQVPFLLQGAVDNINIADISTLTLDGPkstLVLLICYGLARVIVATLNEIKTvafTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVP-TLIELVLTASVLTKKFgpMYSLVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEErlfdEYLAEIQQKNIENTysIGVLNVGQSAIFSIGLTTLmLSTA-SAVTKG-TMTVGNIVAVNALLIQLQIP-----FNFIGYTYQEVRQGFVDMGLVLEFLKTEP--RVSDSPAVKAKETqttaaaatqlngardpraegaapaapptrggggvlaeegttttllgEVIFENVSFSYPNSTgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVM 768
                 5677788888999******************7666665555443444777777889999999998866511155556666666689******************************988777766555443.4567778888888764113344444444444445555555555666677777788999****************99988622225678888888888833446666554444444444324555.599999.57789999999999987766.....555899*********99999999999333..2333333322222245666779***************************************************99**********************************************************************************************************************************************************************************************9876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   5.5   0.00022     0.016     139     405 ..     192     468 ..     182     522 .. 0.73
   2 !  202.4   1.6   3.9e-62   2.8e-60     445     684 ..     553     796 ..     546     798 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00022
   TIGR03797 139 lavllvgl.lgtllglvvPlatgilldev.iPd.......aerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasr.amgvsqirrllsgatlkallssifallnlvlll.vyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsfl 405
                 l++ l++l lg ll++ vP++ +  +d++ i d       + +s+l+ +++   +a +  ++++ ++ +a  R++++   +   +++ +L  l ++f     +g L+   + gv+  + +l + +   + + i  +l+  +l   +    +lv+++  +  ++ t v++ ++++ +rkl+ ++++ +++ v+ ++  + +++ g e++    + +  +e ++ +++      +l+v ++++  +  ++l+  ++s +++ ++++g+ +a n+ + +++
  MMETSP1174-20130828|9672_1 192 LMLSLLSLfLGKLLAVQVPFLLQGAVDNInIADistltldGPKSTLVLLIC-YGLARVIVATLNEIKTVAFTRVSQKSLRTFARGIFTHLHALDSTFHLGNPSGLLSVAyVRGVRGFQTILFQIVFAVVPTLIELVLTASVLTkKFGPMYSLVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQ 468
                 444444431566778888877666666543433000100033333333322.3334455566778899999*********************************99764367887777777666665555555444444333314667777888888888889999**************************************99888777777777777777777777788899898888888888888888889************999887765 PP

  == domain 2    score: 202.4 bits;  conditional E-value: 3.9e-62
   TIGR03797 445 pgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelarR 684
                   +L G++  ++v+F Y +++ + ++ v++++ pGe +a+vGaSGsGKSt lrlL      +sG +l D ++++++ ++ +R ++GvV Q++ l+  s+  ni  g    + +e+ +aar a + + + +   g  T + e g+ lSGG rQR+ iAr++ r Pr++l DE TSA+D  t   ++++l++ +  R  +++AHRL Ti++adri+v+++G+vve+G +e+L+  ++G + +l   
  MMETSP1174-20130828|9672_1 553 TTTLLGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLdASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRtcVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVLeADGHYRRLWDM 796
                 56899***************************************************99999******************************************988886888899999999*******************************************************************99876553399******************************975389999998765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.9   4.2e+02     237     275 ..     421     460 ..     312     467 .. 0.45
   2 !  188.1   2.4   7.5e-58   5.4e-56     305     530 .]     528     756 ..     503     756 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.9
   TIGR02868 237 ealgaaltllaaGlavllallvgveavadgrla.pvalAv 275
                  ++ +  ++++  + ++  +l   +av +g+++ + ++Av
  MMETSP1174-20130828|9672_1 421 IGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTvGNIVAV 460
                 2233333333333333333333333444444432334444 PP

  == domain 2    score: 188.1 bits;  conditional E-value: 7.5e-58
   TIGR02868 305 eRieevldak..vevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                  R e++++a+  +  + ++ ++++++++   ++ ++++s+syp++    ++gv+++++pGe +a+vGasG+GKst l ll++l+d ++G++++d  ++++++ s++r++v v+ qd  lFd +v  N+r +r da+dee++aa ++++ ++ + + ++G+dt++ge+ga lSGGerqR+a+AR++l   +v+l DE t  +D++te  ++++L +a+++rt v+v+hrl
  MMETSP1174-20130828|9672_1 528 PRAEGAAPAAppTRGGGGVLAEEGTTTTLLGEVIFENVSFSYPNSTGtQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRL 756
                 34444444443223333444455555555667899**********9999**********************************************************************************************************9***********************************************************************96 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   3.3   4.1e-05     0.003      43     281 ..     235     478 ..     187     520 .. 0.72
   2 !  178.4   0.8   6.4e-55   4.6e-53     315     541 ..     558     783 ..     554     786 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.1e-05
   TIGR01842  43 stLlvltvlvvvlylvlglleavRskvlvrigekldkalnkkifka..aieatlerkkkeslqalrDldqlrqFltgtgliaffDlPwlpiyllvvfllhpylG.llalvgavvlvalallneaatkkklkeate...asikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragals.alskvlRivlqslvlglGaylaikgeitaGmiiagsilvgraLaPidqaievW 281
                 st lvl +    + +++++l+ +++  ++r+++k   ++++ if+   a+++t + ++ ++l  +  ++ +r F t    i f  +P l+  +l   +l   +G + +lv+    ++   +++++t+ +++   +   +  +++ +   +  nae ++ +g  ++ ++ +++  ++  +++ + ++  g+l+ + s ++ i l +l+l++ a  + kg +t G+i+a   l+ +   P++ +  ++
  MMETSP1174-20130828|9672_1 235 ST-LVLLICYGLARVIVATLNEIKTVAFTRVSQKSLRTFARGIFTHlhALDSTFHLGNPSGLLSVAYVRGVRGFQTILFQIVFAVVPTLIELVLTASVLTKKFGpMYSLVTLATFFGFVTFTSVITDWRMSIRRKlvgVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNvGQSAIFSIGLTTLMLST-ASAVTKGTMTVGNIVAVNALLIQLQIPFNFIGYTY 478
                 33.3444444445678899************************98533899999999*9******************9999******887666666665555553889999999999999999999877654443111444555555566789999999999999999999988888888888888888887245566666677777665.66678999999999999888887777776655444 PP

  == domain 2    score: 178.4 bits;  conditional E-value: 6.4e-55
   TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 ge+  envs+  p++  + ++g+++++ +Ge++a++G+sgsGks+  rll+  +   sG++ +D  +++ +   +l +++G + qd  Lf+ +v  ni   + +a +e+v +aa++a+vh  ++r  +GYdt +ge+Ga LsgG rqR+a+aR + ++P++++ De  + +D + e+ +++alke+  r++t v+++hr + +  +d+i v+ +G++ + G++e+++
  MMETSP1174-20130828|9672_1 558 GEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEAN-RNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLV 783
                 67889*********************************************************************************************77777889*******************************************************************************96.6678999************************99998865 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   4.9     0.089       6.4     333     429 ..     376     472 ..     186     488 .. 0.60
   2 !  172.6   0.0   4.3e-53   3.1e-51     466     706 ..     552     794 ..     547     796 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.089
   TIGR01193 333 lnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPle 429
                  ++  +++++  e++k ++ e+++ +  d+ +a+  +k+++++ +  v ++ ++++  i   +++   a  v ++ +t+G++++ nall  +  P++
  MMETSP1174-20130828|9672_1 376 RTAFFVDSMANAEAVKLFGNEDHEERLFDEYLAEIQQKNIENTYSIGVLNVGQSAIFSIGLTTLMLSTASAVTKGTMTVGNIVAVNALLIQLQIPFN 472
                 445578899999******************************999988888776665554445555678899****************988877775 PP

  == domain 2    score: 172.6 bits;  conditional E-value: 4.3e-53
   TIGR01193 466 elenlngdievndvsysyGygs.evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk.dktiifvahrlsvakksdkiivldeGkiieqGshkel.lkenGfyasli 706
                 ++++l g++ +++vs+sy  ++   ++ +++++   e+i+lvG sGsGkst  +ll ++f+ +sG+il+++ +++d+  + lr+ +  + q+  +f+ s+  n+  g + ++s+ee+++a + a++++ + + + Gy+t++ e ++ +sgG +qr+a+ar++l   +v++ de+ts +d+ te  i++ l + + ++t ++vahrl    ++d+i v+ +Gk++e+G h++l l+++G+y++l 
  MMETSP1174-20130828|9672_1 552 TTTTLLGEVIFENVSFSYPNSTgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYG-RLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANrNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLvLEADGHYRRLW 794
                 567899************876526799****************************************************************************9877.678999****************************************************************************9875389**********************************935789****996 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.2     2e-38   1.5e-36       4     232 ..     562     781 ..     559     789 .. 0.88

  Alignments for each domain:
  == domain 1    score: 123.9 bits;  conditional E-value: 2e-38
   TIGR02315   4 venlskvypngk.qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                 +en+s +ypn + + ++ v +++ +Ge +a++G sG+Gkst lr + rl + +sg+il++++++++++   l  lr+++g+++q+ +l ++ +v  n+  grl a++   +     + ++ ++A+ + ++ g +    +r   LsGG++qRvaiaR++++ p+++l+DE ++++D ++   +m++lk+ n+++  t+++  H++   + +adri  +++g++v +g  ++
  MMETSP1174-20130828|9672_1 562 FENVSFSYPNSTgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMR---LSDLRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVE--AAARAAQVHHAV-MRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNR--TCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHED 781
                 789999**98763689*************************************************887...556689*********99975.7999*******98775433..333444555554.5678899*******************************************************99865..788889***9876.7*************9887765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.1   4.1e-38   2.9e-36       5     233 ..     563     785 ..     559     791 .. 0.84

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 4.1e-38
   TIGR00972   5 knlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaal...wdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 +n++++y + +   ++ v++++   + +al+G sG+Gkst lr l rl d+      +G++l+++++i d       lr++vG+v q    f +s+  n+ yg         +e++++++++  + a+    +   +++ + +  LsGG +qr++iar++   P v+L De tsa+D  +   i + ++e +++ t v+v h +      +d++ ++++G++veeg+ e+++ +
  MMETSP1174-20130828|9672_1 563 ENVSFSYPNSTgtQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVD-----SGRILIDQENIQDM--RLSDLRERVGVVSQDTALFDKSVGYNIRYGRLDAS---DEEVEAAARAAQVHHAVmrqKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTI-MHADRIYVMANGKVVEEGRHEDLVLE 785
                 6778888776533799**********************************98.....8**********998..5678**************************44332...23333333332222222011344678999****************************************************************865.569****************9998765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.7   1.8e-37   1.3e-35    1282    1508 ..     557     784 ..     549     795 .. 0.95

  Alignments for each domain:
  == domain 1    score: 120.1 bits;  conditional E-value: 1.8e-37
   TIGR00957 1282 sgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldp.fsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellq 1508
                   g+v f n s+ y +     ++ +++++  ge + +vg +g+gks+    l r+ +   g i id  ni ++ l dlr ++ ++ qd  lf  s+  n+     + sdeev  a   a +++ v  + ++ d +  e g  ls g+rq v +ar++lr  ++++ de t+avd+ t+  i  +++    + t + +ahrl tim   r+ v+ +g+v e +   +l+ 
  MMETSP1174-20130828|9672_1  557 LGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYgRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLVL 784 
                  699*******************************************9999************************************************97413478************************************************************************999999*99999*****************************999999875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.2   1.9e-35   1.3e-33       8     225 ..     576     790 ..     571     827 .. 0.86

  Alignments for each domain:
  == domain 1    score: 114.4 bits;  conditional E-value: 1.9e-35
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl..eeyedryPde...lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225
                  +n v ++++ Ge i ++G sGsGkst +rll rl +  +G+ilid e+i ++   +l    r ++++v q+ alf  +++  ni +g   +  +e e   +a ++ + v    e+y  r  ++   lsGG +qrv +ar++   P ++l de  sa+d  +   + + l++  ++ ++t v+++h l   +  +dri ++ +G++v  G  ++++ +   +y
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDL----RERVGVVSQDTALFD-KSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRqkEGYDTRVGERgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKE--ANRNRTCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHEDLVLEADGHY 790
                 579999****************************************************....899***********6.6899******877777777889999998888865568999988765555************************************999999996..6779**********8766.59***************9999877655555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.4   2.9e-35   2.1e-33       3     208 ..     561     765 ..     559     773 .. 0.84

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 2.9e-35
   TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervs...aal..ekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrv 208
                  fe+vs +y+ ++   +++vt+++  Ge + lvG sG+Gkst l+l++      +G+i++ +++++   d +++ lr ++G+v qd  l  d++v  n+      +  +  e+  r+     a+  +k G   +  +    lsgGe+qrvaiar++++ P ++l de t+ +d ++  +i++ l+e nr  t v+va   +++++  r  +
  MMETSP1174-20130828|9672_1 561 IFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQ---DMRLSDLRERVGVVSQDTAL-FDKSVGYNIRYGRLDASDEEVEAAARAAqvhHAVmrQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADR--I 765
                 59**********************************************************999886...567899***********986.57888888887644444433333333330112221256799999999999********************************************************999999997654..3 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.3   5.4e-35   3.9e-33       3     201 ..     561     761 ..     560     772 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.8 bits;  conditional E-value: 5.4e-35
   TIGR02673   3 elekvskeyaagv.eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala.levrgkk..eeeiqkrveevl..elvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelve 201
                  +e+vs++y++++ + ++ v++++ +ge + l+GasG+Gk+t l+ll+     ++G++ ++ e+++++   +l+ lR ++gvv qD  l+ d++v  n+    l  + ++  +++   +v++++  ++ g + ++ +    lsgGe+qRvaiaR+i++ P+++l De t  +D +++  i++ lke+n++ t v+va   +++++
  MMETSP1174-20130828|9672_1 561 IFENVSFSYPNSTgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDM---RLSDLRERVGVVSQDTALF-DKSVGYNIRYGrLDASDEEveAAARAAQVHHAVmrQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMH 761
                 599******97762679*********************************************999877...5889***********9986.6788899987525555444003344456665442234689999999****************************************************9999988855554444 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   1.0   1.2e-34   8.6e-33       5     225 ..     563     788 ..     559     794 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.2e-34
   TIGR03864   5 eglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlry...haaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeada 225
                 e++sf+y ++  + +++v+++va+ge +aL+G  G+Gkst + lltrL++ ++g+i +   ++++ + + l+ r+Gvv q+++l  d sv  n+ry    a+ + +  a+ ++++++a+ r+  g   r  e+   L+GG+r+rv iar++l +P+++L De t  +D+++   ++++++e   +++ +v+ a h +  + ++dr+ v+ +Gkv+ +G+ ++l+ ead+
  MMETSP1174-20130828|9672_1 563 ENVSFSYPNStgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLReRVGVVSQDTAL-FDKSVGYNIRYgrlDASDEEVEAAARAAQVHHAVMRQkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEAN-RNRTCVMVA-HRLRTIMHADRIYVMANGKVVEEGRHEDLVLEADG 788
                 6888888766225789*************************************************9998886479***999888.89********94433666666666656666665544322678899999999*******************************************9987.677899865.89999***********************9988775 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.1   1.7e-33   1.2e-31      17     224 ..     581     787 ..     566     826 .. 0.80

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 1.7e-33
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeer.......riseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskd 224
                  +++   + +al G+sGsGk++ +rl++ L   d+g+i +d e +qd      l+  + rvg+v q+  LF   sv  n+rYG+ +a+ ee        +++++ + +  g +  +  + + LsGGe+qRvai+R +L +P+++l De  +a+D      i+  L++ +++    +++v+H l  + + adr+ v+ +G+v  +g  e+++ + d
  MMETSP1174-20130828|9672_1 581 TINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDM----RLSDLRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVeaaaraaQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRN--RTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDLVLEAD 787
                 5555555999*******************************9988875....57999**************85.9********988776553110001133444444556888899999999*******************************************987765..5699*********98.9******************9875544 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   1.7e-32   1.2e-30      13     203 ..     576     765 ..     562     768 .. 0.82

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 1.7e-32
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkkiye....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrv 203
                  ++ + +++  Ge++a+vG sGsGKst L +l++l ++dsg++++++++   +++ + s+ lre++g + q+ aL ++ +v +n++ +      ++ e   +  +v ++v   ++  ++++ e    lsgGe+qRva+ar++l+ ++++l DE t+++D  ++  +++ lke  ++++t ++v H      +adr+
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQEN---IQDMRLSD-LRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRqKEGYDTRVGErgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA-NRNRTCVMVAHRLRTIMHADRI 765
                 5788999**************************************9999...55555555.699************85.8******99777776666666666665555543233444444333333*******************************************987.5799********9999999997 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   1.6e-32   1.1e-30      19     220 ..     575     774 ..     562     775 .. 0.88

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 1.6e-32
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekv.....glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                 + ++gv +++  ge++a+vG+sGsGkst l ll+ l +  sG++l++ ++++ +   + ++lr+ ++G + q    l d ++  n+    l ++ ++ ea+ ra+++ ++v     g + r+ ++ + lsGGerqrvaiar+++  P+++l+de t+ +d +t   i++ l+e n+++  + ++v+h l+ + ++dr   + +gk++
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDM---RLSDLRE-RVGVVSQDTA-LFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVmrqkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNR--TCVMVAHRLRTIMHADRIYVMANGKVV 774
                 5579*******************************************9998876...6889996.58****9766.5689***********999999999998887655552222278899****************************************************99875..56899*******************986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.9   5.8e-32   4.2e-30      14     235 ..     575     783 ..     560     792 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 5.8e-32
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmv.....GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                 t ++g+ ++va+Ge +al+G sGsGkst lr+l  l  +d G+i ++ e++  m+             l  +re++G+v q   lf  k+v  n+    + +   +  ea +ra ++ + v     G   +  +  a lsGG++qrvaiar++   p+v+l devtsa+d      +++ l++  ++++ t ++v+h+++     adr+  + +Gk+veeG+ +++ 
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMR-------------LSDLRERVGVVSQDTALFD-KSVGYNIRYGRLDASD-EEVEAAARAAQVHHAVmrqkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKE--ANRNRTCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHEDLV 783
                 567899****************************************999998888.............7899**************6.7899999988877654.5566666776666555333338888899999*********************************96654445555544..567889********9875.69****************99986 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.8   8.3e-32     6e-30      21     219 ..     577     773 ..     561     774 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 8.3e-32
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 ++ + ++++pge + l G+sGsGk t l l++ l  v +G + + +++   +++ +l ++r ++G++ q   l++   +  n+r +  l ++ ++ ea+a+a+++ +av  ++     r+  + + lsgG +qrvaiar++   P+++l de t+a+d  +   +++ l++  r++++  ++v+h  r +  adri  m +Gk+
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQEN---IQDMRLSDLRERVGVVSQDTALFDK-SVGYNIRYGR-LDASDEEVEAAARAAQVHHAVMRQKegydtRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTC--VMVAHRLRTIMHADRIYVMANGKV 773
                 468899***********************************9886655...55678999***************97.56789*9984.444445666666666666666544445555*************************************************99999887765..89********************97 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.8   1.1e-31   7.6e-30       1     193 [.     592     787 ..     592     792 .. 0.83

  Alignments for each domain:
  == domain 1    score: 101.9 bits;  conditional E-value: 1.1e-31
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtev..paekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelv..qleefakr...kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePa 193
                 l+G+sGsGk+t Lrll  l ++dsG+il+d+e++ ++  +  +  v+vv q+ aLf   +v  n+ +g      ++ e ++r  ++ + v  q e++ +r   +   lsGG rqrva+ar++   P+++L De  sa+D      + + lk+ +++   t+v+v+h  +  +  +dri v+ +Gk++  g  e++  e  
  MMETSP1174-20130828|9672_1 592 LVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMrlSDLRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHHAVmrQKEGYDTRvgeRGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRN--RTCVMVAHRLRT-IMHADRIYVMANGKVVEEGRHEDLVLEAD 787
                 78********************************87521444567***********75.9********766666677888888888777622344444442225677**********************************999988899999987..6*******8875.5679**************99998876655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.2   5.7e-30   4.1e-28      18     220 ..     575     780 ..     562     788 .. 0.85

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 5.7e-30
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditr..lppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPe 220
                 t+++ + ++v+ ge ++l+G sG Gk+t Lr+++ L + d+G+il+++++i +  l+  +   G+v q  aLf    v  ni yG  +   ++ e+a+r +++ + v     g ++      + lsGG +qrva+ar +  +P ++L De  sa+D    + + + lk+  r+   t +mv+h     ++ aDri vm +gk+   g  e
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDmrLSDLRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHHAVmrqkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRN--RTCVMVAHRLR-TIMHADRIYVMANGKVVEEGRHE 780
                 67899*********************************************9861156666679**********76.89*******888887888888888777776622222445555566788********************************************99885..699*****876.5667************9888655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.2     6e-29   4.3e-27       4     218 ..     563     782 ..     560     790 .. 0.81

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 6e-29
   TIGR00968   4 anvskrfGdf..qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdniafGleirkkdkakikakveelle..lvqleklgdryp...sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                 +nvs ++ +   + ++ v ++v  G+ +al+G sGsGkst lr+++ l + dsGril++ +++  +++ d   ++G v q+ alf + +v  ni +G      ++ +  a+  ++ +  + q e+++ r     + lsGG+rqrva+ar++   p+v+l de  +a+d      + + l++     + t+v+v+h     ++ adri v+ +Gk+ + g  e++
  MMETSP1174-20130828|9672_1 563 ENVSFSYPNStgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDlrERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHHavMRQKEGYDTRVGergAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANR--NRTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDL 782
                 56666665441156899******************************************999988877653257***********87.899******655555555555555555441155888888887522267********************************9999999999988655..679******9987775.9***********998888776 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   1.6   8.1e-29   5.9e-27      15     225 ..     575     783 ..     562     808 .. 0.83

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 8.1e-29
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvel..ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                 + +++v++++ +G+  +l+G  GsGkst lrll+ l   d G++ ++ ++++ ++      rv +v qd+ a  + sv   +  Gr+         ++  a+v ++++ + e   + + +     lsGGerqrv +ar++ + P+++l de t  +dv++ ++++++++e  + + t v+  h l   ++ +d++ v+++G+vv  G  ++++
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDT-ALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGydTRVGE-RGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA-NRNRTCVMVAHRLRT-IMHADRIYVMANGKVVEEGRHEDLV 783
                 5689******************************************************99********97.5678899999******977666555555555555555554431133444.4578*********************************************9.555566666699975.6789**************9887644 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.7     1e-28   7.3e-27       9     227 ..     560     782 ..     553     791 .. 0.83

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1e-28
   TIGR03258   9 vvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth..lppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklv..qlsdaaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                 v +e+++ +y     + ++ +++++ +Ge +al+G sGsGk+t lr+++ +   d Gr+l+ + ++    l   +  ++++ q+ alf +  v  n+ +G       + + a r a+    v  q   + +r+    a lsGG +qrva+ar++   p+v+l de  sa+d      +   ++al++   + t ++v+h r  +++ ad+i +m +G++++ G  ++l
  MMETSP1174-20130828|9672_1 560 VIFENVSFSYPNStgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDmrLSDLRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHHAVmrQKEGYDTRVgerGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGI---MQALKEANRNRTCVMVAH-RLRTIMHADRIYVMANGKVVEEGRHEDL 782
                 6677777777654115688899999**************************************99975226788999***********86.7999*****888888888889999988887722334455555222578********************************9877666...56677777899******9.5678999****************98776 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   5.9e-28   4.3e-26      19     228 ..     575     782 ..     562     790 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 5.9e-28
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalp.lelentpkekikrkvtellalv....glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                 + ++ v++ v  g+ + ++gasg+gkst +r +  l    sg +++d +++  ++ ++    r ++g++ q   l+  ++v  n+    l+  ++  e   r  +   a++    g   +     + lsgg++qrvaiar++   p+v+lcde tsa+d at   i++ lke nr+   t ++++h +  + +  d++ v+ +g+++e+g   ++
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSD---LRERVGVVSQDTALFD-KSVGYNIRYGrLDASDEEVEAAARAAQVHHAVMrqkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRN--RTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDL 782
                 678999*****************************************99987776555...5899*******98875.6677777664144333333333332222223321111444444556788************************************************5..68999*****99876.79************9987665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.1   4.4e-27   3.1e-25      24     238 ..     574     782 ..     560     795 .. 0.83

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 4.4e-27
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiige.Plr.hltsldeserkariae.llelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvael 238
                  + +++v +++  Get+al+G sG+Gkst  rll  l    +G++    ++++ +  ++   +r  v +v qd+   +   ksv+  i+   l    +++++++r a++++ ++++ e  +  +  + + lsGG  qr++iar++   P++++ de  s +d+   ++i++ lk+ +++   ++++++h lr +   a+r+ v+ +G++vee +  +l
  MMETSP1174-20130828|9672_1 574 GTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSD---LRERVGVVSQDTA--LF-DKSVGYNIRYgRLDaSDEEVEAAARAAQVHHaVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRN--RTCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHEDL 782
                 566899*****************************************999999987665...6789*******74..43.45676666641454134678888888887653567777778888899999********************************************97655..689********996.59*************9876665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.2   3.8e-26   2.7e-24       4     219 ..     563     782 ..     560     787 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 3.8e-26
   TIGR03410   4 enlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelF.Pvlkeml...kR...rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                 en++ +Y +s  + +++v+++v+ ge++a++G  g Gk+t l+ l+ l +v sG+i +++e+i++++ ++  ++ ++ v+q   +f k +v  n++ g   ++++e +  +++ ++   v+++ +   +R   rg  LsGG +q +aiaR+++  P+++l De t  +  +    i +++ke ++  + + ++v + l   ++ adr++v+ +G+vv+eg++e+l
  MMETSP1174-20130828|9672_1 563 ENVSFSYPNStgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSD-LRERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQVHhAVMRQKEgydTRvgeRGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANR--NRTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDL 782
                 5677777766224799*************************************************98765.6777999******9987.9*******9776666655555555554413343322111232227888*******************************98887788888887655..6788999999*99988.9***************99876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.2   7.1e-26   5.1e-24      39     254 ..     575     782 ..     554     784 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 7.1e-26
   TIGR00955  39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekve...akemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevlee.lgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 + +++v+  + +Ge +A++G+SG+GK+T l  l+     ++ +   +l++ e+++    + +r++ + v qd  ++ + +v  ++ +    rl+++  + e  +r  +v ++ ++ ++  dtr+g  g    lSgGer+R+a+a  +l  P +++cDE Ts  D ++   ++++Lk+ a++ +t +++ H    +     d+i+++a+G+vv +G+ e++
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGR---ILIDQENIQdmrLSDLRERVGVVSQDTALFDK-SVGYNIRYG---RLDASDEEVEAAARAAQVHHAvMRQKEGYDTRVGERGA--ILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKE-ANRNRTCVMVAHRL--RTIMHADRIYVMANGKVVEEGRHEDL 782
                 568899999************************9887666554...888776655111678999*******9887776.444455554...55554444455555555555515667899*****7775..9********************************************9.88999999****84..444456*************9998876 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2     0.001     0.074     225     325 ..     342     445 ..     312     472 .. 0.74
   2 !   71.8   0.0   6.7e-23   4.9e-21    1216    1431 ..     558     775 ..     553     802 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
   TIGR01271 225 fcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiie....nirqvelkltrkvayvryfsssafffsgllvvvlsvvp 325
                 + +l+ +  +  + ++++   m  r k  g  +er a+  + + n ++vk ++ e+  e++ +    +i+q++++ t  ++ +   +s+  f  gl  ++ls   
  MMETSP1174-20130828|9672_1 342 LVTLATFFGFVTFTSVITDWRMSIRRKLVGVDNERTAFFVDSMANAEAVKLFGNEDHEERLFDeylaEIQQKNIENTYSIGVLNVGQSA-IFSIGLTTLMLSTAS 445
                 445555555556778888889999********************************9999876333379************99877765.555566666666544 PP

  == domain 2    score: 71.8 bits;  conditional E-value: 6.7e-23
   TIGR01271 1216 gqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllste.geiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldp.yeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkq 1431
                  g++  ++++  y ++  + ++ +++ v +g+++ l+g +gsgkst l  l rl + + g i id    + + l + r   gv+ q   ++  +   n+       sdee+   a    ++  + +  +  d  + + g +ls g +q + +ar+il   +++l de ++ +d  t   i ++lk+a  n t ++  hr+ +++  +++ v+ + +v +
  MMETSP1174-20130828|9672_1  558 GEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDsGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIRYgRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMHADRIYVMANGKVVE 775 
                  5666778888898888889999********************************987599***********************************9996414568***********9999999888999**********************************************999***************************9998887777654 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.5   2.6e-25   1.8e-23       7     185 ..     576     754 ..     569     758 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 2.6e-25
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaav..disgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  ++g+ ++v  ge++al+Ga G+Gkst l+ l+ l+   sG++l+d e+++  r  l +lr++v++v qd+   lf  +v  ++ +g l+   +e e+ +r  +  +av  + +g++ r  +   +lsgGe++rvaia  +   p+v+l de t+ +d a +  ++++l++ + + + v + +h
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMR--LSDLRERVGVVSQDT--ALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVmrQKEGYDTRVGErgaILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCV-MVAH 754
                 5789********************************************998655..99*********9975..7**************99988888888887777777722456899987542228*******************************************9988776555.4445 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   3.1e-25   2.2e-23      18     208 ..     581     774 ..     562     778 .. 0.82

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 3.1e-25
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqniglG.lkpg.lkln.avqkekved.va.rqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  ++v+ Ge +a++G sG+Gkst l l++ +    sG i +++++   +r++  +  v ++ q+  lf + +v  ni  G l+ +   ++ a +  +v++ v  ++ G +  +      lsGG+rqrva+ar ++r   ++l de  sa+d +  + ++  +k+   ++++t ++v+h+l  +   a+++ v+++Gk+ 
  MMETSP1174-20130828|9672_1 581 TINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIqdMRLSDLRERVGVVSQDTALFDK-SVGYNIRYGrLDASdEEVEaAARAAQVHHaVMrQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKE--ANRNRTCVMVAHRLRTI-MHADRIYVMANGKVV 774
                 689*************************************9987622678899999***********86.8999**999444432233313344455541441446888888888889********************************9999888877766..57899********9875.579**********96 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.8   5.4e-25   3.9e-23       9     244 ..     577     813 ..     572     828 .. 0.81

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 5.4e-25
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd..evRrsigvvpqkasvdedLtarenlellgelyglpkk.eaeeraeellelve.lkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaeltes 244
                 ++gv+++v  ge ++l+G  G GK+t +++Lt l   dsG+  +   ++    +  ++R+++gvv q++++ ++  +++ +  +g+l    ++ ea +ra+++ + v   ke  d +v++    +sgG r+r+ +a++++  P+v+  DE t+ +D+ t   i + ++e +++  t ++ +h l  + + adr+ ++ +Gk++ e+  e+L  + +++    +  d+++ ++  + ++a ++++
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQD-MRlsDLRERVGVVSQDTALFDKSVGYN-I-RYGRLDASDEEvEAAARAAQVHHAVMrQKEGYDTRVGErgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNR-TCVMVAHRLRTI-MHADRIYVMANGKVVEEGRHEDLVLEADGHYR--RLWDMQDGQALDEPKIAAIESK 813
                 789***************************************999887754.43359*****************99985.4.4688877665425778999988766414556677887534448*******************************************999876.555678999987.78*********************977776664..5777777776666665555554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.7   3.7e-23   2.6e-21       3     217 ..     578     786 ..     576     795 .. 0.73

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 3.7e-23
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPl..ltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqeP 217
                 ++v +++  g+ +alvG+sGsGks+ +l +l  l       sG+il+d +++++++l +  ++++++ q+    f+    ++i+   l++     + +++a  ++ +a+ +   e  ++ + +    lsGG  qRv ia ++l  + +++ De t+++Dv++++ +++ l+e +++r  + ++++h l+ + + ad ++vm +Gk+ve+g  ++l+ e 
  MMETSP1174-20130828|9672_1 578 NGVTINVAPGETIALVGASGSGKST-CLRLLTRLF---DVDSGRILIDQENIQDMRLSDlrERVGVVSQDTA-LFDKSvgYNIRYGRLDASDEEVEAAARAA-QVHHAVMRQ-KEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNR--TCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDLVLEA 786
                 68999999****************5.555554443...4679************966542156888888854.45533023444444444333333333333.222222222.22234455666789********************************************976655..6788*******975.9***************999987665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.3   1.3e-22   9.1e-21       2     197 ..     578     777 ..     577     799 .. 0.82

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.3e-22
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrm.vvfqnysllpwltvrenial.avdavlrdlskserreiveehi..elvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 ++v +++  ge i+l+g sg gkst l l++ l    sg + ++ ++i++       +r+ vv q+ +l+  ++v  ni    +da  ++++ + r + v++ +  +  g  +    r + lsgg +qrvaiar++   p+++l de   a+d  t   + + l +   +++ t++mv+h +  +++ +dr+ +++ng   + g
  MMETSP1174-20130828|9672_1 578 NGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRlsdlRERVgVVSQDTALFD-KSVGYNIRYgRLDASDEEVEAAARAAQVHHAVmrQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA--NRNRTCVMVAHRLR-TIMHADRIYVMANGKVVEEG 777
                 7899********************************************98642222567646777777776.6666777651688888899999998888887622345666777778888***********************************99998877664..45679*******96.7899**********877666 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.3   2.4e-22   1.7e-20      39     260 ..     576     790 ..     570     795 .. 0.84

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 2.4e-22
   TIGR03415  39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqle.lvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaney 260
                 ++++++++v+ Ge + l+G sGsGks+ lr + +l  v  G++l+ +e+       ++   l +lr +rv +v q  al+  ++v  n+ +G   +   + e   r+++  + ++  +e  d++vge    lsGG +qrv +ar +     ++l de  sa+d      +   l e   + ++t v+v+h l   ++  +ri +m +G++v  g  e++vl+   +y
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQEN-------IQDMRLSDLR-ERVGVVSQDTALFD-KSVGYNIRYGRLDASDEEVEAAARAAQVHHaVMRQKEGYDTRVGErgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA--NRNRTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDLVLEADGHY 790
                 57899**************************************996654.......4556788888.69*********996.89********5444445555555555544404455667788888777779*******************************99999999988775..558**********98887.69*********************998888 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.7   2.7e+02      91     112 ..     487     508 ..     477     525 .. 0.71
   2 !   66.9   0.1   5.1e-21   3.7e-19      24     205 ..     577     753 ..     566     774 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3.7
   TIGR02324  91 tigyvsqfLrviPRvsalevva 112
                 ++g v  fL+  PRvs    v+
  MMETSP1174-20130828|9672_1 487 DMGLVLEFLKTEPRVSDSPAVK 508
                 6899***********9765554 PP

  == domain 2    score: 66.9 bits;  conditional E-value: 5.1e-21
   TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlnipe....rLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligi 205
                 ++ v+++v+ Ge +al G+sG+Gkst l+ l + + ++sgril+ +        ++++ ++ ++R +++g vsq      +    ++    l +   e e+a+ +a+   a ++  e    r+ +   a  sGGe+qRv iar+++    ++L de t+++d a+   +++ +kea ++++ ++  
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQ-------ENIQDMRLSDLR-ERVGVVSQDTALFDKSVGYNIRYGRLDASDEEVEAAARAAQVHHAVMRQKEgydtRVGER-GAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVA 753
                 7899**************************************9987.......345678899999.89********99999999999999999988888888777776665565554222244444.499****************95556788************99******998877654432 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.4     9e-21   6.4e-19      16     230 ..     577     780 ..     571     791 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 9e-21
   TIGR01978  16 LkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllelevee.raraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                 ++g++++v +Ge+ a++G+ GsGkst  + l+      v sG+i ++++++++++  + r r G+  +  +   +   s+   +r     ++    +ee+++++  +  + + ++++++e + +R    G   sGGe++r  i +  l  P++++ De+ s +Dv +   +++ +++ + +++++++++h  rl   ++ d ++v+++G++v++G  e
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTR--LFDVDSGRILIDQENIQDMRLSDlRERVGVV-SQDT--ALFDKSVGYNIRYGRLDAS----DEEVEAAA--RAAQVHHAVMRQKEGYDTRVGERGaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEAN-RNRTCVMVAH--RLRTIMHADRIYVMANGKVVEEGRHE 780
                 589**************************9975..68899**************987647788873.3333..3333444444555444433....44445544..455556678888888999988888667********************************99999999998865.5677888999..5667799****************865 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.1e-21   2.2e-19      14     220 ..     573     783 ..     559     811 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 3.1e-21
   TIGR03522  14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl.evrkniGylPehnPlyldl..yvreylefsaalyklkgrklkkrveeli..elvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelk 220
                 +   ++ v+ ++ +Ge + ++G  G+Gkst +++lt  +  dsG + +++e++ +  l + r+ +G + +   l+ +   y   y ++ a+  +++  ++  +v++ +  ++ G  +    + + ls G rqrv +a+++l  P+v++ de t+ +d    v i + +ke  +++t ++ +h ++ +    dr+ ++ +Gk+v + + e+l+
  MMETSP1174-20130828|9672_1 573 TGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLsDLRERVGVVSQDTALFDKSvgYNIRYGRLDASDEEVEAAARAAQVHHAVmrQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHEDLV 783
                 456799********************************************9998876527999************875458899**************999999886633678999999999999**********************************************************99986.47************999988875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   1.5     2e-20   1.4e-18       2     200 ..     583     783 ..     582     802 .. 0.73

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 2e-20
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkg.....rreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200
                 +v +Ge ++l+G  G+Gk+t lr +  l  v  G++ ++ ++ ++      r ++G v q   +   f  +v     + r g++       +a  +a +     ++ +e  d  vGe    lsGG+rqrv +ar++  +p+++l de  + +d+ ++  +++ ++e a+ +++ +m++h l   +++    v+ ng+vv +g  ++l 
  MMETSP1174-20130828|9672_1 583 NVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMrlsdlRERVGVVSQDTAL---FDKSVGY---NIRYGRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRVGErgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKE-ANRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRHEDLV 783
                 6889**********************************99865543111115578888886543...3334433...334444444444433333333333333334455566666555559**********************************9888888887.56678899********99987777999********999874 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.3   2.3e-20   1.7e-18     300     518 ..     577     785 ..     566     792 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 2.3e-20
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel..akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
                 +++v+++v  +e   lvG sG+Gk+t  ++l  + +  sG++ +   ++  dm           ++ +G++ q+ al+ + +v  n+     l+  de   a  +a  v +av  ++e     +      ls Ger rva+a+ +++ pr+++ de t ++d  t+v + +++ +a +  ++t v+v+h +  +++  dr+ +m +Gk+v+ G+ e++v e
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILID-QENIQDMRLSD--L----RERVGVVSQDTALFDK-SVGYNIRYG-RLDASDEEveAAARAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANR--NRTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHEDLVLE 785
                 789*************************************98654.34455665544..3....4458**********75.566666544.466555431256677777777776666666666667889**************************************9999999865..79*********98865.8*****************999865 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       8.1   5.8e+02       3      32 ..     191     220 ..     189     247 .. 0.69
   2 !   64.3   0.9   3.4e-20   2.5e-18       8     222 ..     564     779 ..     559     793 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 8.1
   TIGR02323   3 llevselsksygskkgcrvsflypGevlgi 32 
                 ll +s ls + g+  +++v fl  G v  i
  MMETSP1174-20130828|9672_1 191 LLMLSLLSLFLGKLLAVQVPFLLQGAVDNI 220
                 666666666666666667777666666443 PP

  == domain 2    score: 64.3 bits;  conditional E-value: 3.4e-20
   TIGR02323   8 elsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanige.rllavgarhyGkiraaak...wlekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvr.elglaviivthlavarllaqrllvmkqGrvvesGlt 222
                 ++s sy +++g +   v++ + pGe +++vG sGsGkst l  l+  +  d+G +  ++ +   + ++ls+ + r       G+v q+++ +  + s G ni   rl a  +      raa+     +++ e   +r+  + a +sGG +qr+ iar+++  pr+++ +     v v + + ++++l   + + + ++v+h   + + a+r+ vm +G+vve+G  
  MMETSP1174-20130828|9672_1 564 NVSFSYPNSTGTQingVTInVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQEN--IQDMRLSDLRER------VGVVSQDTALF--DKSVGYNIRYgRLDASDEEVEAAARAAQVhhaVMRQKEGYDTRVgeRGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEaNRNRTCVMVAHRLRTIMHADRIYVMANGKVVEEGRH 779
                 6677788877777223344689***********************99999****9988766..333566766555......69999988754..55678888642566665555444444443234566667767788777889************************7777888888888888888642678899*****7777899***************965 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   3.2e-19   2.3e-17     443     640 ..     550     756 ..     506     772 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 3.2e-19
   TIGR00954 443 rgkveaqdngikfeniplvtPegd.vlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfker...........glsdkdLeqiLeevkLedller.eggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshrk 640
                 +g+ ++    ++fen+    P+     i+ ++++v  G+ + ++G  G GKs   R+l+ l+ v +g+  +++e+      q   m l  lR+ +    + + ++++           + sd+++e+     ++++ + r + g+d+ v +   +LsgGe+qR+a+AR +   P+  + DE tsAv v  E  + +++ke++   t + v+hr 
  MMETSP1174-20130828|9672_1 550 EGTTTTLLGEVIFENVSFSYPNSTgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENI-----Q--DMRLSDLRERVGVVSQDTALFDKsvgynirygrlDASDEEVEAAARAAQVHHAVMRqKEGYDTrVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRnrTCVMVAHRL 756
                 555555566799*********764278*********************************************9974.....3..5888899999988888888888889999999999****************9977651578986599999**********************************************987511567777875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.4   3.3e-19   2.4e-17       9     226 ..     564     786 ..     559     795 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 3.3e-19
   TIGR01288   9 gvsksygdk..vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieevip.sllefarlesk..advrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideq 226
                 +vs sy +     +n +++ +a ge + l+g  g+gkst  rl+  l   d g+i + +e++   r    r ++gvv+q  +l  + +v  n+  +gr    s  e+e++   + ++ a +  k   d+rv    a lsgg ++r+++ar+++  p++++ de t+ +d  +   i + l+    r +t ++ +h +       dr+ v+ +g+ + egr + l+ e 
  MMETSP1174-20130828|9672_1 564 NVSFSYPNStgTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQdMRLSDLRERVGVVSQDTAL-FDKSVGYNI-RYGRL-DASDEEVEAAARaAQVHHAVMRQKegYDTRVgergAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA-NRNRTCVMVAHRLRTIM-HADRIYVMANGKVVEEGRHEDLVLEA 786
                 555566543114689999*************************************9877765414666679********6666.555677775.68985.5677889887651567777666552257877444367******************************************9975.7999*******998765.68*****************9998775 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.7e-09   3.4e-07      15     102 ..     575     658 ..     570     685 .. 0.83
   2 !   32.6   0.1   8.6e-11   6.2e-09     357     484 ..     652     776 ..     649     786 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.7e-09
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflG 102
                 + ++++++++ +Ge ++l G  G+Gkst +++l+ ++     +G il ++e+++   ++d  +  + ++ q+ +l  + sv  ni  G
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVD--SGRILIDQENIQDMRLSDLRE-RVGVVSQDTALF-DKSVGYNIRYG 658
                 5699********************************9876..6****************9744.355677887776.45777777665 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 8.6e-11
   TIGR02633 357 Gknitlavlkkfakksrideaaelkaieeeikrlkvkt.aspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklkad 484
                 G ni    l+   +  ++++aa    +++++ r k    +      a lsGG++q+  +a+ +l  prv++ de t  vdv +   i + +++  ++  + ++v+  l  ++  +dr+ v+ +Gk+  +
  MMETSP1174-20130828|9672_1 652 GYNIRYGRLDA--SDEEVEAAARAAQVHHAVMRQKEGYdTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEA-NRNRTCVMVAHRLRTIM-HADRIYVMANGKVVEE 776
                 55555555553..344556666655555555554433202223334679****************************************99875.56667889999999887.59**********9765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.2   6.7e-19   4.8e-17      17     228 ..     576     781 ..     561     788 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 6.7e-19
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                  +n ++++v++ge  +++G+ G+Gk+t+l ++t     d+G++l+++++++ ++ +++ r  +g   q +++f++ +v  n++    +  +     +ar+++ +++ +  + +  g ++++ ++ + Ls G++q++ i+  +++ p+++l De ++ +  + +  + + lke +++r+ v+v h +  + + a+++ v+++Gkv+ eG  ++
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDL-RERVGVVSQDTALFDK-SVGYNIRYGRLDASDEEVEAAARAAQ-VHHAV--MRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRTIMH-ADRIYVMANGKVVEEGRHED 781
                 5899*************************************************99887.4557778899999975.89999988755444333333233332.22222..234557899999*****************************************************************9976.789*************9776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.4e-18   9.9e-17      16     186 ..     577     755 ..     566     766 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.4e-18
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdela.eellylgHldglKaeLsalEnLkfyaallqseqktveealekv.........gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 ++g+++++a+Ge+++++G  G+GK+t LR+l+ L   +sG++ +++++++++r +   e++  ++   +l  + s+  n+++ + + ++e+ ++ +  ++v         g +       a Ls G ++R+a+ar +l + ++ + DE t a+D+++   ++++l++  ++   v + +h 
  MMETSP1174-20130828|9672_1 577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLrERVGVVSQDTAL-FDKSVGYNIRYGRLDASDEEVEAAARAAQVhhavmrqkeGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCV-MVAHR 755
                 67899********************************************999866550555555555555.6679*******9888775554333323333000011011333333345578***********************************999999998765555444.44454 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   2.5e-18   1.8e-16     338     550 ..     561     776 ..     548     779 .. 0.87

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 2.5e-18
   TIGR01194 338 elkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde...kkqasldqattylsrleledkvkvedlnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                  + +v +sy++   s g ++  + +++a Ge + +vG  G Gkst ++ll  l+   +G++l+d e + d    d r+    v  d  lfd+ v+ +    + +as ++ +   +  ++++ v  +  +y t      + ls G+r+r+a+  + l    v+l de ++  d a      +  l +   r +t ++++h  r    adr+  +a+Gkvv+e
  MMETSP1174-20130828|9672_1 561 IFENVSFSYPN---STGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDMRLSDLRERVGVVSQDTALFDKSVGYNIrygRLDASDEEVEAAARAAQVHHAVMRQKEGYDTRvgergAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQ-ALKEAN-RNRTCVMVAHRLRTIMHADRIYVMANGKVVEE 776
                 56788888886...5667889999**********************************************************************97642214578888999999999*************98522222569*******************************998755554.455554.568999************************98 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   1.5e-16   1.1e-14      14     208 ..     575     779 ..     562     785 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.5e-16
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlk.kiGsliesPalyenltarenl...kvrtlllglpe.srieevlkivdlentek.....kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekki 208
                 + +n v+++v   +  +l+G  G+Gkst l+llt l+  +sG+il+d+++++    +dl+  +G++ ++ al+++   + n+   ++ +  ++++  +r  +v + v  ++++       +   +s G +qr+ ia ++l+ P++++ de t  +d      + + +k  +++ + v+  +h l  +   ad i ++++Gk+  e++ 
  MMETSP1174-20130828|9672_1 575 TQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQDmrlSDLReRVGVVSQDTALFDKSVGY-NIrygRLDASDEEVEAaARAAQVHHAVMRQKEGYdtrvgERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVM-VAHRLRTIM-HADRIYVMANGKVVEEGRH 779
                 56899******************************************98765411156652599999******987665.44122466667777642567777777765554321111134456899*****************************9887777777887777766655.579999885.59**********9888775 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.3   9.8e-16   7.1e-14     946    1141 ..     577     776 ..     550     785 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 9.8e-16
   TIGR01257  946 vdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswe......eaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycs 1141
                  ++ + i +   +  a++g  g+gk+t l +lt l+   sg +l+  ++i+   l  +r+ +g++ q   lf +  v    + y +l     e       aq+    m +  g   +  e    lsgg ++++++a +++   +v++ de ts vd  +   i + l      rt +m +h +    +  dri ++++g++   
  MMETSP1174-20130828|9672_1  577 INGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDQENIQdMRLSDLRERVGVVSQDTALFDKS-VGY-NIRYGRLDASDEEveaaarAAQVHHAVMRQKEGYDTRVGERGAILSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANRNRTCVMVAHRLRT-IMHADRIYVMANGKVVEE 776 
                  555666666777889*********************************962689*****************874.444.456777766543321222257999999999**********************************************************************99965.6899*********98655 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.1   1.1e-14   8.1e-13     318     497 ..     557     754 ..     551     770 .. 0.68

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.1e-14
   TIGR03719 318 lGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiG.etvklayvdqsrd...alddnktvweeisdGl...dllklgkvevnsrayvgrfnfkGadqqk....kvge....lsGGernrvhlakllkeggnvllldePtndldvetlraleeallefa...Gcavvis 497
                 lG++++e  + s      + i+ +++++ +g  + ++G+ G+Gkst ++l+t   + dsG++ i  e ++   +   r+    + ++ +++++  + +     l+ ++ ev++ a  ++       q+     +vge    lsGGer+rv +a+++ +   v+l de t  +dv t   + +al+e      c++v  
  MMETSP1174-20130828|9672_1 557 LGEVIFENVSFSYPNSTGTQINGVTINVAPGETIALVGASGSGKSTCLRLLTRLFDVDSGRILIDqENIQDMRLSDLRErvgVVSQDTALFDKSVGYNiryGRLDASDEEVEAAARAAQVHHAVMRQKEgydtRVGErgaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANrnrTCVMVAH 754
                 6666655555555555567899****************************************9973445544444444411156777777876433221113477777788777766666655444432111255534444*********************************996666666654321114555443 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.8e-05     0.002     778     813 ..     576     611 ..     462     651 .. 0.78
   2 !   29.7   0.3   3.8e-10   2.8e-08     179     293 ..     668     777 ..     648     783 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.8e-05
   TIGR00956 778 lLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                  ++ v+  v PG+  AL+GasG Gk t l  L+   
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCLRLLTRLF 611
                 36899999********************99997643 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 3.8e-10
   TIGR00956 179 eyakkladvvlaiyGLshtkntkvGndlvRG..vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfG 293
                 e a++ a+v  a++  +  ++t+vG+   RG  +sGGer+Rv+ia +++  +++++ D++t  +D at + +++alk+  +   + ++va +     +    d++ v+ +Gk +  G
  MMETSP1174-20130828|9672_1 668 EAAARAAQVHHAVMRQKEGYDTRVGE---RGaiLSGGERQRVAIARTILRAPRVMLCDEVTSAVDVATEVGIMQALKEANR-NRTCVMVA-HRL--RTIMHADRIYVMANGKVVEEG 777
                 4566778888899999999******9...66447*******************************************9654.33444443.333..233345888888888877655 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.033       2.4     622     650 ..     576     604 ..     567     629 .. 0.77
   2 !   14.3   0.0   2.6e-05    0.0019     821     901 ..     690     766 ..     671     782 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.033
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLi 650
                  ++ +++++  g+ +++ G sgsGkst +
  MMETSP1174-20130828|9672_1 576 QINGVTINVAPGETIALVGASGSGKSTCL 604
                 45667777777777777777777777754 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.6e-05
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd..kGntvvviehnldviksaDyii 901
                 ++G+    LsGGe qrv +a+ + +      + + De t  +   D++  + ++q l +  +  t v++ h l  i +aD i 
  MMETSP1174-20130828|9672_1 690 RVGERGAILSGGERQRVAIARTILRA---PRVMLCDEVTSAV---DVATEVGIMQALKEanRNRTCVMVAHRLRTIMHADRIY 766
                 7899999*************999865...568899****987...67777777777765115679***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        83  (0.020234); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.74u 0.20s 00:00:01.94 Elapsed: 00:00:01.53
# Mc/sec: 715.16
//
Query:       MMETSP1174-20130828|9677_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.3   0.0    3.7e-05   21.2   0.0    2.3  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
     0.0018   15.3   0.0     0.0029   14.6   0.0    1.2  1  TIGR02993 ectoine_eutD: ectoine utilization protein EutD


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.8e-08   3.7e-05       3     140 ..     207     345 ..     206     385 .. 0.74
   2 ?    1.6   0.0     0.018        36     186     203 ..     420     437 ..     388     444 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.8e-08
   TIGR00500   3 lkskeeieklrkagelvaevlellerevkpGvstkeldk.iakdfiekkgAksafkgykgfpgsvCiSvNevviH....GipdkkvlkdgDivniDvgveldGyygDtaktllvgkvseeaekll.eatkealkkaieeikvgk 140
                 +ks+ e + +r a+ ++ ++   + re  pG+   +l+    ++  ++ gA+ a       p   C      v+H    G p++++++ gDi+ +D+g+e++ y +D + ++ ++   ++a++++ e +  a + +++ +++g 
  MMETSP1174-20130828|9677_1 207 VKSALEQDIMRYASLVTSRAHVKVMRECVPGMYEYQLEArFLYHAYDSGGARHAAYT----PICACGP-SAAVLHyghaGAPNRRLIRSGDIMLMDMGAEYQCYCSDITCSYPANGRFTSAQRMVyEGVLLAQQWVMQAMRPGV 345
                 567777778888888888888889999999998888885144555555566665432....4445543.334444444599*******************************99876666665541555555566666666665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.018
   TIGR00500 186 etnvrlkeGmviaiEPmv 203
                 +    l eGm +++EP +
  MMETSP1174-20130828|9677_1 420 RMARELEEGMCLTVEPGI 437
                 447789**********66 PP

>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-06    0.0029     153     256 ..     202     306 ..     185     344 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
   TIGR02993 153 nwqravksetelkymrkaakivekmhqrilervepgmrkcdlvadi.ydagirgvdgfggdypaivpllpsgadasaphltwddkp....lkvgegtffeiagvykryh 256
                 +  r vks  e + mr a+ +  + h +++ +  pgm   +l a   y+a     d  g  + a  p+  +g  a+  h      p    +++g+  ++++   y+ y 
  MMETSP1174-20130828|9677_1 202 DEARVVKSALEQDIMRYASLVTSRAHVKVMRECVPGMYEYQLEARFlYHA----YDSGGARHAAYTPICACGPSAAVLHYGHAGAPnrrlIRSGDIMLMDMGAEYQCYC 306
                 5679**************************************99851443....3445667788889999999998888877766622224566666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1976.17
//
Query:       MMETSP1174-20130828|9684_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|9682_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1435.67
//
Query:       MMETSP1174-20130828|9692_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1174-20130828|9690_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 507.33
//
Query:       MMETSP1174-20130828|9688_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 1104.80
//
Query:       MMETSP1174-20130828|9694_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1047.11
//
Query:       MMETSP1174-20130828|9697_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1174-20130828|9699_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.78
# Mc/sec: 128.60
//
Query:       MMETSP1174-20130828|9695_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.60
# Mc/sec: 994.32
//
Query:       MMETSP1174-20130828|9701_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|9696_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-06   23.3   0.1    8.7e-06   23.1   0.1    1.1  1  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
     0.0022   14.9   0.1     0.0023   14.8   0.0    1.1  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
      0.005   13.7   0.0     0.0053   13.6   0.0    1.0  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
     0.0083   12.8   0.1     0.0089   12.7   0.1    1.1  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase


Domain annotation for each model (and alignments):
>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   8.5e-09   8.7e-06       4      70 ..       8      87 ..       5     109 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.5e-09
   TIGR04182  4 vliPtlneaatigevieefkel...Gyed....ilvidGnstddtqeiakeaGar..vv....aqsGkGkGqavreavel 70
                v++Pt ne++ i   ++ ++++     +d    i+v dG+std+t++iak++ +   v     a  G+G+G+ +  ave 
  MMETSP1174-20130828|9696_1  8 VIVPTRNEETNILAALDAISRTrplLADDiellIFVTDGGSTDKTRDIAKAHESVsaVFgiepAAVGRGRGAQMNTAVEK 87
                89********99887777654311134443344799************99876431133222245799999999999874 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-06    0.0023      47      95 ..       7      59 ..       3      97 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
   TIGR03469 47 vavvPardeaevigeaveslleqd....YpGklkvilvDDeseDgtaeiarev 95
                 ++vP r+e   i +a++++ + +     + +l ++++D  s+D t +ia++ 
  MMETSP1174-20130828|9696_1  7 LVIVPTRNEETNILAALDAISRTRpllaDDIELLIFVTDGGSTDKTRDIAKAH 59
                589**************99877642222467899***************9975 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.1e-06    0.0053      49     127 ..       8      91 ..       1     102 [. 0.73

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.1e-06
   TIGR03937  49 llvpcynegenveetisal...lklkypnlev.iainD.GskDdtaeildklakkedrlrvihleenqGkaaalneglkaakse 127
                 ++vp+ ne+ n+  +++a+     l  +++e+ i++ D Gs+D+t +i ++ ++ +  + +   +  +G+ a +n+++++  s+
  MMETSP1174-20130828|9696_1   8 VIVPTRNEETNILAALDAIsrtRPLLADDIELlIFVTDgGSTDKTRDIAKAHESVSAVFGIEPAAVGRGRGAQMNTAVEKGVSH 91 
                 79*********9766555500055667899963678773588999888777777777666666778899999999998876655 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   8.7e-06    0.0089      78     128 ..       8      61 ..       2      93 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.7e-06
   TIGR03965  78 vVvPvrdrpaglarllaalealdyp..rdrle..vivVDDgSedpvetaaaraae 128
                 v+vP r+ ++++ + l+a+ + ++p  +d +e  + v D gS+d+++++a+++ +
  MMETSP1174-20130828|9696_1   8 VIVPTRNEETNILAALDAI-SRTRPllADDIEllIFVTDGGSTDKTRDIAKAHES 61 
                 99**************999.44444333434421445677899999888654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 434.79
//
Query:       MMETSP1174-20130828|9703_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|9708_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.57
# Mc/sec: 625.81
//
Query:       MMETSP1174-20130828|9712_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   40.9   0.0    2.4e-11   40.9   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    7.2e-08   29.6   0.0    9.5e-08   29.2   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
      4e-06   23.9   0.0    5.1e-06   23.6   0.0    1.1  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.8e-14   2.4e-11      85     181 ..      90     185 ..      14     226 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1.8e-14
   TIGR02160  85 iraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaa.epkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreere 181
                 + +G+t ++ +   +  ++  +++  h  +va G+G++P+  ++ ++l++  +++++ ++++nr++++++++ el++l  +yp+rf+l+  ls+ +r+
  MMETSP1174-20130828|9712_1  90 LTPGETADMWVKPAKGIYE--PNKWSHIGLVAGGTGLAPLYQMALSILKTpTDQTKISMIFSNRNEEDILLRAELEELAAQYPERFSLYFTLSNANRD 185
                 5556665554333332232..334478899******************98468999*************************************99887 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   6.9e-11   9.5e-08     207     376 ..      55     216 ..      45     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 6.9e-11
   TIGR01941 207 rayslanypeekgiiklnvriatppfanaeippGkmssyifslkpGdkvtv.sGpfGeffvkdtdaelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendn.fkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcG 376
                  +ysl + p+  g   l v+  +pp        G++s  + sl pG+   +   p    +  ++ +++  ++GG+G apl    l  lk+   + kis+ +  r +++++ + + +el+a++++ f  + +ls+    d w G  g++ + +  ++l   ++p  +  ++cG
  MMETSP1174-20130828|9712_1  55 MSYSLISMPNAVGFFDLLVKEYAPP-------LGVVSRSLNSLTPGETADMwVKPAKGIYEPNKWSHIGLVAGGTGLAPLYQMALSILKTPTDQTKISMIFSNRNEEDILLRAELEELAAQYPErFSLYFTLSNAN-RDGWCGGRGWVNERMVRDHLPP-PSPR-VMVFVCG 216
                 5788888888888888888877776.......588999999*****99866257888999999999999*****************************************************855********975.799******9998888877743.3443.4445666 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.8e-09   5.1e-06      66     169 ..      80     186 ..      54     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.8e-09
   TIGR02911  66 vgkvtdevfelkegdk..lflrgpygngfdvdnykdkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlae....wkekinlvltldeaeedd 169
                 +g+v+ ++ +l+ g++  ++++ + g  ++ +  k  ++ +vaggtg+ap+  +   + k + +  ++++i   +++edil + +l+e    + e+++l +tl +a+ d 
  MMETSP1174-20130828|9712_1  80 LGVVSRSLNSLTPGETadMWVKPAKGI-YEPN--KWSHIGLVAGGTGLAPLYQMALSILKTPTDQTKISMIFSNRNEEDILLRAELEElaaqYPERFSLYFTLSNANRDG 186
                 567777777777766411555554442.4444..44567789*****************************************998762222567788999999998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1035.91
//
Query:       MMETSP1174-20130828|9719_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|9721_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1085.24
//
Query:       MMETSP1174-20130828|9720_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-91  303.5   0.0    6.3e-88  293.1   0.0    2.2  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    2.9e-05   21.5   0.0    6.5e-05   20.3   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.0     3e-91   6.3e-88       3     359 ..     211     564 ..     208     569 .. 0.92
   2 !    8.1   0.0   8.8e-05      0.18     385     424 ..     610     649 ..     595     655 .. 0.86

  Alignments for each domain:
  == domain 1    score: 293.1 bits;  conditional E-value: 3e-91
   TIGR01982   3 rlieiirvllrygllalvekivelsllllakllakvskeear..keslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeak..rlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd..gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepi 359
                 r  +i++v+++yg+ +          +l  ++++++ ke+ +  +++ g+ l+++l ++GP+fiKlGQ+ls+R Dll +e+++eLs+Lqd+vp fd ++ar+++e+elg pv++lF++ + k lAaAS++Qvh+A+l +g+eV+vKv+R +++++++ d++ l+ la+l+++l p+++    +  ev  e+++ l +E+d++ Eaan  ++++  ++ + ++vP  y ++t+++v+++e++ g+++sd+e++++aG++ k++a++ +es + q  r gfFH D+HpGN+ v+ +  gk+i+ DfG++ +l e++rr +++++++++++d+ +  + +  +g ++   d    e+  +++++++
  MMETSP1174-20130828|9720_1 211 RGLRIWTVIMQYGIRD---------WYLRSRFTNSWDKERVSkaRTDVGHDLTKVLVRMGPTFIKLGQLLSSRIDLLDREYTSELSRLQDDVPGFDPDVARRIVERELGAPVDQLFKRWDRKHLAAASLGQVHRAQLSSGEEVVVKVQRQNLNNTFHVDLANLKILAHLANRLDPRSEgaETDWLEVYTEYSRLLWQEIDYENEAANGIRFQKDCAAYDWIKVPDFYLNMTTKSVVVMEYVPGVKISDVEAIEAAGINVKQVAQRSAESYMSQLCRTGFFHCDPHPGNLAVDCEngGKLIYYDFGMMEELPEQTRRCFSNLIFSIFTNDAVKACDALAGMGILKPSADRPVVEAVAKELIDRF 564
                 5555666666666555.........5666666666666554434789******************************************************************************************************************************987652268899**********************************************************************************************************988779****************************************99999999888887777777777765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 8.8e-05
   TIGR01982 385 levqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkk 424
                 l  +p ++++ +++  ++G+g+ ld + dl k+a+p++  
  MMETSP1174-20130828|9720_1 610 LVFPPVFTFVYRAFNCLDGIGKGLDKKYDLTKIARPYLFD 649
                 6778999999**************************9865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.2e-08   6.5e-05      59     138 ..     422     510 ..     410     524 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.2e-08
   TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekel.....ellke.vGelvgklHkagivhgDlttsNiivk...ddklyliDfGLgkk 138
                 +++P  y   + ++ +vmey+ g k++d+   +       +++++ +  ++++l ++g+ h D+++ N+ v+   ++kl+  DfG+ + 
  MMETSP1174-20130828|9720_1 422 IKVPDFYLNMTTKSVVVMEYVPGVKISDVEAIEAAginvkQVAQRsAESYMSQLCRTGFFHCDPHPGNLAVDcenGGKLIYYDFGMMEE 510
                 899************************98655444557765555414557899******************54448899999***9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.35s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 1441.03
//
Query:       MMETSP1174-20130828|9725_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 1761.23
//
Query:       MMETSP1174-20130828|9727_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|9726_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1019.92
//
Query:       MMETSP1174-20130828|9729_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1174-20130828|9730_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.65
# Mc/sec: 576.69
//
Query:       MMETSP1174-20130828|9734_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.7   0.0      0.043   11.4   0.0    1.2  1  TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family


Domain annotation for each model (and alignments):
>> TIGR03560  F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     1e-05     0.043     139     178 ..       7      47 ..       3      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
   TIGR03560 139 lseeeetfe.GkyyrleealalPkplqrpkppiligGsGek 178
                 + e +++++ G+++rleea a+ +p  + ++ + +gG    
  MMETSP1174-20130828|9734_1   7 MAEPSVSWDdGAFFRLEEASASSRPPLNAHVYLCVGGADSS 47 
                 4667788988***************************8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 596.08
//
Query:       MMETSP1174-20130828|9736_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.8   0.1       0.33    8.9   0.0    2.1  2  TIGR04140 chp_AF_0576: TIGR04140 family protein


Domain annotation for each model (and alignments):
>> TIGR04140  chp_AF_0576: TIGR04140 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   8.1e-05      0.33       5      37 ..       4      36 ..       1      53 [. 0.79
   2 ?    2.9   0.0    0.0057        23       2      19 ..      50      67 ..      49      83 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 8.1e-05
   TIGR04140  5 letaippeeleeIaeksnaeVriklkeveeyel 37
                l++a+  +++  I     a+V+++l ++e +e 
  MMETSP1174-20130828|9736_1  4 LKSAVDAKDVDGIHSALAAAVEVELDNKETREA 36
                899************************998864 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0057
   TIGR04140  2 rriletaippeeleeIae 19
                r  l+tai   +l+++  
  MMETSP1174-20130828|9736_1 50 REELSTAIDHSDLKMVTA 67
                67899********99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 302.19
//
Query:       MMETSP1174-20130828|9738_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1259.64
//
Query:       MMETSP1174-20130828|9740_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.4   3.6      0.034   10.9   2.5    1.2  1  TIGR03742 PRTRC_F: PRTRC system protein F


Domain annotation for each model (and alignments):
>> TIGR03742  PRTRC_F: PRTRC system protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5   8.4e-06     0.034     168     232 ..     179     237 ..     164     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.4e-06
   TIGR03742 168 eeealeelcdeddeereaylpsvveqaleedaflpshehlkewaarkklkaagrvalvaakaksd 232
                 +e+++e   + ++e rea+++s+ e++l+e+      ++ ++w a k+++aa+r+a+ + ++  +
  MMETSP1174-20130828|9740_1 179 AEAWKEGGPAAEKEAREAHRASLREKELNER------QSYRKWVADKRQEAAERRAAKKESKVEH 237
                 46666666677*******************9......77***************54444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 900.35
//
Query:       MMETSP1174-20130828|9744_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   20.8   0.0      2e-05   20.4   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.9e-09     2e-05       1     198 [.     100     290 ..     100     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.9e-09
   TIGR03903   1 etghkvaikllRedaa..eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveG..rtlrevLaadGa.LpaaetgrLmlqvLDalaaahdaG..vvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevl 198
                 +tg++vaik+++   a   ++++  R    + + ++ +  n+v+L  + +  +     vFe+      tl e++  +G  Lp     +   q L +l    ++G  v+h D+kP+ni + ++ ++s  k++DFG +      ++       r   ++ s  Y +Pe L +   t + D+++   +++e   Gk+   G+   + l
  MMETSP1174-20130828|9744_1 100 QTGENVAIKIIKARPAytMQAQREIRLLQSLRALDEDKTSNVVELRSHFVYMN-HQCLVFEMLSAnlYTLLERVHFHGFsLPL--VRKFAYQLLVSLQFLASKGvrVIHTDVKPENICIRNS-KRSAIKLIDFGSSC-----QE--G---QRLFSYIQSRYYRSPEVLLNMDYTVAIDMWSLACVLVEMHVGKPLFSGDCQEDQL 290
                 68999999999887665455666667777777777778889999888877766.55679998876225999999999951444..4567778888888888888446***********9876.67889******654.....33..2...24467999*************************************9999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.83
# Mc/sec: 852.36
//
Query:       MMETSP1174-20130828|9746_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.49
# Mc/sec: 1193.29
//
Query:       MMETSP1174-20130828|9748_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|9747_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   19.4   2.6        1.4    7.2   0.0    4.0  4  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0026        10       5      37 ..      63      92 ..      60      98 .. 0.87
   2 !    4.8   0.0    0.0018       7.5       5      26 ..     115     136 ..     112     146 .. 0.86
   3 !    7.2   0.0   0.00034       1.4       4      32 ..     166     193 ..     164     198 .. 0.85
   4 ?   -1.3   0.0      0.15     6e+02       4      16 ..     204     216 ..     202     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0026
   TIGR01557  5 vWteelhrrFlqAvqklGgedkatPkkIlelmk 37
                 Wt  +++   +Av    g+++   k+I+e   
  MMETSP1174-20130828|9747_1 63 NWTLHEDETLRNAVGTHEGKNW---KRIAECLA 92
                7*************999999**...***99765 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0018
   TIGR01557   5 vWteelhrrFlqAvqklGgedk 26 
                 +Wtee++++ +  v k G +++
  MMETSP1174-20130828|9747_1 115 PWTEEEDQKVITLVSKHGCKKW 136
                 7***************999888 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00034
   TIGR01557   4 vvWteelhrrFlqAvqklGgedkatPkkI 32 
                   Wt e+++  ++A  klG  ++a  ++I
  MMETSP1174-20130828|9747_1 166 DAWTAEEDKIIVNAHGKLGN-KWAEISRI 193
                 57******************.99765555 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.15
   TIGR01557   4 vvWteelhrrFlq 16 
                  +W + l+r+ lq
  MMETSP1174-20130828|9747_1 204 NRWNSTLQRVLLQ 216
                 68*******9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1497.13
//
Query:       MMETSP1174-20130828|9750_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1174-20130828|9751_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-36  122.6   9.7    4.3e-36  122.5   6.7    1.0  1  TIGR00803 nst: UDP-galactose transporter
  ------ inclusion threshold ------
      0.029   11.2   0.1      0.039   10.8   0.1    1.2  1  TIGR04049 AIR_rel_sll0787: AIR synthase-related protein, sll0787 family


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   6.7   2.1e-39   4.3e-36      65     222 .]       3     167 ..       1     167 [. 0.92

  Alignments for each domain:
  == domain 1    score: 122.5 bits;  conditional E-value: 2.1e-39
   TIGR00803  65 vaivqlvqssa.ktlseg.....nlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvt.fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 v ivq+ qs + + +  g     n+ +g+ a l+++ +sg+agvyfek+lk++++s++vrn+ l  +g++v    +++  d +li ++gff+gy+  vw++v  +++ggl+v++vvky+d+++k+++++++i+l  l s ++f+++++  f+lg++lv+ a++lY
  MMETSP1174-20130828|9751_1   3 VCIVQVSQSPKnRSVGDGdsgsrNVTIGFLATLASCCTSGFAGVYFEKVLKESSISLWVRNIHLACIGMVVSyGTTIVGNDSHLIQKNGFFAGYNGVVWLLVGVQAFGGLLVAAVVKYTDSILKGFATSVAILLTCLTSQVFFNFPVTKIFILGAMLVVYAVFLY 167
                 66778777776655555566688999********************************************994466778999**********************************************************************************9 PP

>> TIGR04049  AIR_rel_sll0787: AIR synthase-related protein, sll0787 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.9e-05     0.039      63      98 ..      82     117 ..      75     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
   TIGR04049  63 llpdlveedPwfAGwsgvlvnvsDiaAmGGrpiavv 98 
                   ++l++++ +fAG+ gv+  +  + A GG  +a v
  MMETSP1174-20130828|9751_1  82 NDSHLIQKNGFFAGYNGVVWLLVGVQAFGGLLVAAV 117
                 55789*************************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1174-20130828|9753_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       554  (0.135056); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9754_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   54.7   0.4    3.1e-15   54.4   0.3    1.1  1  TIGR01223 Pmev_kin_anim: phosphomevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR01223  Pmev_kin_anim: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.3   7.7e-19   3.1e-15      99     166 ..       2      73 ..       1      90 [. 0.87

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 7.7e-19
   TIGR01223  99 vsdvrrksdirwfreaygpevvitlrlvaleesrsargwvftagvddvesecdlddl....adgfdvvlend 166
                 +sdvrr +d+ +f + + p   it+r+ a + +r++r w +t gvddv sec ldd     +  +dv++ n+
  MMETSP1174-20130828|9754_1   2 ISDVRRPTDLDFFLNEHCPWECITVRVQASDATRRTRHWEYTVGVDDVASECALDDWpatqGRPWDVIVTNE 73 
                 79******************************************************8332234578888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 608.09
//
Query:       MMETSP1174-20130828|9756_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1174-20130828|9758_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-05   18.9   1.3     0.0001   18.6   0.9    1.0  1  TIGR01074 rep: ATP-dependent DNA helicase Rep
    0.00033   16.9   0.1    0.00042   16.6   0.1    1.1  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
    0.00064   15.9   0.0    0.00072   15.8   0.0    1.1  1  TIGR01075 uvrD: DNA helicase II
    0.00086   16.6   0.8      0.001   16.4   0.5    1.2  1  TIGR03236 dnd_assoc_1: DNA phosphorothioation-dependent restriction protein DptG
     0.0019   14.4   0.5        0.2    7.7   0.2    2.3  2  TIGR02784 addA_alphas: double-strand break repair helicase AddA
      0.004   13.1   1.0       0.01   11.8   0.0    1.8  2  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
  ------ inclusion threshold ------
      0.016   10.9   3.6       0.11    8.0   0.0    2.0  2  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
      0.035    9.8   0.0      0.046    9.5   0.0    1.2  1  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9     2e-07    0.0001     442     610 ..       4     164 ..       1     170 [. 0.81

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2e-07
   TIGR01074 442 qklseraaeklkkftellkeirkkaerseavelvrslve.didyeewlretsesekaaelrlknveelvewlkemlegdeedekmtleqvvkkltlrdllerkeeeeesdqvqlmtlhaskGlefpyvflvGmeegilPhqssiee.dnveeerrlayvGitrakkeltlt 610
                  +l e+a++k+++ +e l  +++  e s+   +vr   + + +  e+l e++ese+a +  l+++e   ew+ +    d++  +   ++ ++k+   + +e+k        ++l+ +h  kGle   v l     ++l +q s        ++  l+yv +tra+k l+l 
  MMETSP1174-20130828|9758_1   4 IHLAEKARDKVNETIERLFILMELLEGSNRNVAVRGATNkKWKSFEELSEYAESEEA-QDLLSDIEYAREWVCQ----DKKTSA-DFKEKMEKIKTHNFVEEK----ADADLELSNVHQYKGLESDCVILSDDFVELLTDQGSPRIwSRSSDDLNLVYVAVTRARKRLILN 164
                 589999999999999999999999999999999997765156778899999999988.6668999999***996....333333.677788888888888854....445689*****************9999999999998654255677899*************985 PP

>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   8.1e-07   0.00042     520     613 ..      73     169 ..       4     178 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 8.1e-07
   TIGR01073 520 s...edkslvdfleklaLvadldeleeeeGdavtlmtlhaakGLefpvvflvGleegvfPharsledekeleeerrlayvgitraeeeLyltkaksr 613
                     ++k+ +df ek+  +   + +ee+    + l  +h  kGLe + v l      ++  + s +  +   ++  l yv++tra+++L l +  s+
  MMETSP1174-20130828|9758_1  73 WvcqDKKTSADFKEKMEKIKTHNFVEEKADADLELSNVHQYKGLESDCVILSDDFVELLTDQGSPRIWSRSSDDLNLVYVAVTRARKRLILNDGLSK 169
                 133255899******************97789*****************999877777777777777777788889**************9876665 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-06   0.00072     545     608 ..     101     164 ..       6     173 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
   TIGR01075 545 gedavqlmtlhsakGlefplvflvGleeGlfPsemsldekGrleeerrlayvgitrarkkltlt 608
                  +  ++l  +h  kGle + v l      l+  + s     r  ++  l+yv++trark+l+l 
  MMETSP1174-20130828|9758_1 101 ADADLELSNVHQYKGLESDCVILSDDFVELLTDQGSPRIWSRSSDDLNLVYVAVTRARKRLILN 164
                 33458999****************999999*******************************986 PP

>> TIGR03236  dnd_assoc_1: DNA phosphorothioation-dependent restriction protein DptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   1.9e-06     0.001     162     243 ..       9      91 ..       1     151 [. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.9e-06
   TIGR03236 162 lgfrrlkeyvedLfpvlsaleylneadeveakrkplfklfeeikelmdeekeelsqrlknfiee...wysti.etWkdsstpkevl 243
                  +  +++e +e Lf+ ++ le  n+   v++ +  ++k fee+ e  ++e+    q l ++ie    w  ++ +t  d  ++ e +
  MMETSP1174-20130828|9758_1   9 KARDKVNETIERLFILMELLEGSNRNVAVRGATNKKWKSFEELSEYAESEEA---QDLLSDIEYareWVCQDkKTSADFKEKMEKI 91 
                 467899**************************************88877654...5555555542226333312223333333333 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0024       1.2     772     815 ..     100     143 ..      57     148 .. 0.74
   2 !    7.7   0.2   0.00038       0.2     849     868 ..     145     164 ..     141     175 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0024
   TIGR02784 772 kerdevRvmTvHaaKGleapvVflvdtgskaaasqrvekllaee 815
                 k+   + +  vH  KGle+  V+l d  ++  ++q  +++ + +
  MMETSP1174-20130828|9758_1 100 KADADLELSNVHQYKGLESDCVILSDDFVELLTDQGSPRIWSRS 143
                 44455666789****************99999999988887665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00038
   TIGR02784 849 EyrRLLYVamTRAedrLivc 868
                 + + L YVa+TRA++rLi+ 
  MMETSP1174-20130828|9758_1 145 DDLNLVYVAVTRARKRLILN 164
                 56789*************85 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.11        58     704     704 ..      87      87 ..      28     134 .. 0.47
   2 !   11.8   0.0     2e-05      0.01     789     810 ..     142     163 ..     140     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.11
   TIGR00609 704 l 704
                  
  MMETSP1174-20130828|9758_1  87 K 87 
                 1 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2e-05
   TIGR00609 789 rlaedlrllYVAlTRAkkqlvi 810
                 r+++dl+l+YVA+TRA+k l++
  MMETSP1174-20130828|9758_1 142 RSSDDLNLVYVAVTRARKRLIL 163
                 689***************9987 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.0     0.007       3.6     260     330 ..      39     110 ..       4     129 .. 0.77
   2 ?    8.0   0.0   0.00022      0.11     857     876 ..     144     163 ..     138     177 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.007
   TIGR02785 260 kkaqedvnelkkavalvklknlk.aakkeeekedlleeakklreeaKkqlkklkekyfareeeelkrelkel 330
                  +++++++++++  +  + ++++  ++  e+ ++ + + kk   + K++++k+k++ f +e+ +   el ++
  MMETSP1174-20130828|9758_1  39 GATNKKWKSFEELSEYAESEEAQdLLSDIEYAREWVCQDKKTSADFKEKMEKIKTHNFVEEKADADLELSNV 110
                 4567889999999888888777757777899999999999999999*******9999999988877666655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00022
   TIGR02785 857 sEemRvlYVAlTRAkekLiL 876
                 s+++ ++YVA+TRA+++LiL
  MMETSP1174-20130828|9758_1 144 SDDLNLVYVAVTRARKRLIL 163
                 788999*************9 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   8.9e-05     0.046     675     694 ..     139     163 ..      65     171 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 8.9e-05
   TIGR01448 675 mLeR.....nllYTalTRakkklvl 694
                 + +R     nl+Y a+TRa+k+l+l
  MMETSP1174-20130828|9758_1 139 IWSRssddlNLVYVAVTRARKRLIL 163
                 4555444449*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.59
# Mc/sec: 624.15
//
Query:       MMETSP1174-20130828|9761_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   21.5   0.0    7.4e-05   20.9   0.0    1.2  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00027   19.3   0.0    0.00065   18.0   0.0    1.6  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family
    0.00066   17.0   0.1      0.001   16.4   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00074   16.3   0.0     0.0015   15.3   0.0    1.5  2  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0018   15.5   0.3     0.0024   15.2   0.2    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
     0.0078   13.5   0.0      0.011   13.0   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
  ------ inclusion threshold ------
       0.03   11.5   0.1       0.04   11.1   0.0    1.1  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
      0.049   10.7   0.0      0.066   10.3   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-07   7.4e-05      19      95 ..      39     122 ..      30     133 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.4e-07
   TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap.......kaeeds..leeadavfvg 95 
                  ++v+lD  aG G  ++ +   ++  ++ya e n++al  +++Nl+++gv +  +v g+ +        a   s  + ++d+v++g
  MMETSP1174-20130828|9761_1  39 TTEVMLDLYAGIGDYALPLLLHAQAKHLYACESNPHALAALRANLDDHGVTDRCTVYGGDNaktcsssGAG--SkiMGAVDRVCLG 122
                 4679********************************************77666655554333655543222..1447888888887 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06   0.00065       1      49 [.      42      90 ..      42     106 .. 0.90
   2 ?   -2.0   0.0       1.9     1e+03      50      82 ..     130     162 ..     124     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.3e-06
   TIGR01444  1 vviDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn 49
                v++D  A iGd++l ++ +++  + +a E +p++l+ l++n+ ++++ +
  MMETSP1174-20130828|9761_1 42 VMLDLYAGIGDYALPLLLHAQAKHLYACESNPHALAALRANLDDHGVTD 90
                578999*************************************999854 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.9
   TIGR01444  50 vkllnaAvgdregeleftvsddatgnsslaads 82 
                 + l  +A+  + g+l ++ +  + + +++a +s
  MMETSP1174-20130828|9761_1 130 WPLAAWALKPQGGWLHVHRHVRKAEVKEWAETS 162
                 677788888888899998888888888887766 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06     0.001      89     151 ..      40     103 ..      26     115 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2e-06
   TIGR03534  89 klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal 151
                 +  +lDl +G G  al l+ + +  +++a++ +++Al+  r+N++ +g+++ ++++ +d  + +
  MMETSP1174-20130828|9761_1  40 TEVMLDLYAGIGDYALPLLLHAQAKHLYACESNPHALAALRANLDDHGVTDrCTVYGGDNAKTC 103
                 35789********************************************999999999987766 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-06    0.0015     294     341 ..      40      89 ..      23     105 .. 0.86
   2 ?   -2.7   0.0      0.83   4.3e+02      34      56 ..     146     168 ..     144     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.8e-06
   TIGR00479 294 eekvvDaycGvGtftlpl..AkqaksvvgvevvkesvekakrnAelngia 341
                  e ++D+y+G+G ++lpl    qak+ ++ e +++++   + n   +g++
  MMETSP1174-20130828|9761_1  40 TEVMLDLYAGIGDYALPLllHAQAKHLYACESNPHALAALRANLDDHGVT 89 
                 6899*********9998622789***********9999988888888876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.83
   TIGR00479  34 vkkqyaearvvkireespeRtep 56 
                 v+++  +a+v+++ e s +R e+
  MMETSP1174-20130828|9761_1 146 VHRHVRKAEVKEWAETSARRFEA 168
                 67778899999999999999875 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   4.6e-06    0.0024      86     141 ..      39      98 ..      19     119 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.6e-06
   TIGR03704  86 arlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaG....grvyeGd 141
                 ++ v+ dl  G G  ++ l  + +a  l+a++ +p a+   r nl+d+G    ++vy Gd
  MMETSP1174-20130828|9761_1  39 TTEVMLDLYAGIGDYALPLLLHAQAKHLYACESNPHALAALRANLDDHGvtdrCTVYGGD 98 
                 35699*******************************************933333577777 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.1e-05     0.011     155     215 ..      35      96 ..      29     109 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-05
   TIGR00406 155 sldlkdkkviDvGcGSGiLsiaalk.lgaakvvavDiDplavesarkNlelNqvsdllqvkl 215
                  +d++ ++++D+ +G G  ++ +l+  +a+ ++a++ +p a+ + r Nl+  +v+d+  v+ 
  MMETSP1174-20130828|9761_1  35 PIDRTTEVMLDLYAGIGDYALPLLLhAQAKHLYACESNPHALAALRANLDDHGVTDRCTVYG 96 
                 57899999*********99999765168999**************************99875 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.8e-05      0.04     120     181 ..      38      99 ..      26     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.8e-05
   TIGR03533 120 eevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdl 181
                 ++ + +ldl +G G  a+ +  + +  ++ a +   +aL+  ++n+++++++dr++++ +d 
  MMETSP1174-20130828|9761_1  38 RTTEVMLDLYAGIGDYALPLLLHAQAKHLYACESNPHALAALRANLDDHGVTDRCTVYGGDN 99 
                 566789*************************************************9998885 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013     0.066      31      87 ..      41     102 ..      25     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   TIGR00755  31 dvvlEiGpGlGa..LTeellekakkvvaiEiDkrlaekLrkkle...leekleviegDalkl 87 
                 +v+l   +G+G+  L   l ++ak+++a E  ++  ++Lr +l+   ++ + +v+ gD  k+
  MMETSP1174-20130828|9761_1  41 EVMLDLYAGIGDyaLPLLLHAQAKHLYACESNPHALAALRANLDdhgVTDRCTVYGGDNAKT 102
                 5666666777761155556688999******************9999999********8886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 648.95
//
Query:       MMETSP1174-20130828|9759_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 589.12
//
Query:       MMETSP1174-20130828|9763_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|9773_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|9772_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1174-20130828|9774_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 668.46
//
Query:       MMETSP1174-20130828|9777_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-64  214.1   0.1    5.9e-64  213.8   0.1    1.1  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8   0.1   1.4e-67   5.9e-64       1     228 []      53     292 ..      53     292 .. 0.93

  Alignments for each domain:
  == domain 1    score: 213.8 bits;  conditional E-value: 1.4e-67
   TIGR00419   1 lviinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeveseiqvaAqnv.davksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleere........aartinnvattaaaaA..lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                 ++++n+K   + +k   +v  ++   + + ++ev vap+  +l +v++ ++  i vaAq+v + +k+Ga tGe  A ml d+G+++v+ gHsErR + ke++ l+++k  ++ + gl +vvC+ge+leere        ++  + ++a + + a   + ++v+A+EPv+++GtGk++ +A+a+  ++++r++++k vs+ va   r++yG+sv+ ++++elaa +d+dG+L+++a lk++
  MMETSP1174-20130828|9777_1  53 IIGGNWKSACGYEKSRDLVDMMNSLQSIPRNIEVFVAPSSPFLTMVSESLQDGIAVAAQDVgNHTKPGARTGEAFATMLSDVGCEWVICGHSERRQYQKESSSLVAEKAKVALDNGLGVVVCIGESLEEREsgrleevlCSDMMSTLAGSIGSAPqtWANVVIAYEPVWAVGTGKTAKPADAQSTHAMIRNWVSKnVSASVASALRIQYGGSVKPGNAKELAACPDIDGFLIGGAALKPD 292
                 689****999*************99999*********************************456799****************************************************************66665555555555555555544388************************************999******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 838.68
//
Query:       MMETSP1174-20130828|9776_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 841.74
//
Query:       MMETSP1174-20130828|9781_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|9780_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1438.68
//
Query:       MMETSP1174-20130828|9784_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|9787_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.5   0.6        1.2    7.2   0.0    2.8  3  TIGR02514 type_III_yscP: type III secretion system needle length determinant


Domain annotation for each model (and alignments):
>> TIGR02514  type_III_yscP: type III secretion system needle length determinant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.036   1.5e+02      83      93 ..       3      13 ..       1      17 [. 0.82
   2 ?    7.2   0.0   0.00028       1.2      77     110 ..      26      55 ..      22      71 .. 0.77
   3 ?    2.1   0.0     0.011        46      79      98 ..      67      86 ..      52      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.036
   TIGR02514 83 qarqeLleRLq 93
                 a+ eLl+RL 
  MMETSP1174-20130828|9787_1  3 NAKRELLQRLH 13
                68999999985 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00028
   TIGR02514  77 ssqllqqarqeLleRLqrlepeqpvrvdlseqad 110
                 ++ +l+ a+ +Ll+RL+  +      ++++++a+
  MMETSP1174-20130828|9787_1  26 GFSVLEDAKRDLLQRLEEAHY----GISFNDEAH 55 
                 577999**********97766....345555555 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.011
   TIGR02514 79 qllqqarqeLleRLqrlepe 98
                 + + a++e+l+RL  ++ +
  MMETSP1174-20130828|9787_1 67 PVYEDAKSEMLQRLAEVHYG 86
                567889********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 410.24
//
Query:       MMETSP1174-20130828|9786_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.2   0.0      0.041   10.7   0.0    1.1  1  TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated


Domain annotation for each model (and alignments):
>> TIGR03019  pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     1e-05     0.041     128     181 ..      52     114 ..      42     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1e-05
   TIGR03019 128 deeallkaiprkqRaqvrkgikagleseldgd.........ldrfyevyaesvrdlGtPvfsr 181
                 d++++++  ++k  + vr   ++g e e+  d         l++f ev+a+s+++ G P + +
  MMETSP1174-20130828|9786_1  52 DDDENVTRTHKKLANYVRSHSQSGTENEIVADeygedeidsLEKFMEVFATSIHNDGYPFLKQ 114
                 6788899999999999999999999887755545556888899****************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|9789_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 881.22
//
Query:       MMETSP1174-20130828|9790_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 719.55
//
Query:       MMETSP1174-20130828|9797_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|9792_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 1107.67
//
Query:       MMETSP1174-20130828|9795_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1695.02
//
Query:       MMETSP1174-20130828|9803_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1174-20130828|9801_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-70  232.9   0.1      1e-69  232.1   0.1    1.3  1  TIGR00021 rpiA: ribose 5-phosphate isomerase A


Domain annotation for each model (and alignments):
>> TIGR00021  rpiA: ribose 5-phosphate isomerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   0.1   2.5e-73     1e-69       2     214 ..     444     671 ..     443     675 .. 0.92

  Alignments for each domain:
  == domain 1    score: 232.1 bits;  conditional E-value: 2.5e-73
   TIGR00021   2 kraaaeaaaelvedgmvvGlGtGsTvkylieelgervkkesl.kikgvptSkkteelakelgiplssldevkeldlaiDGADevdeklqliKGgGgallrEKivasaskrfiviaDesKlvkklg.kfplPvevvpfaakavleklek......egleaelrka..ek.....agpvvTdngnyilDvkfekiiedpealeeelksipGvvetGlfidmadkvivgtk 214
                 +r  ++a+ ++ve+gmv+GlGtGsT+ +++e++g+++k+++l +i++vptS++t+++a++l ipl++ld+   ld+aiDGAD  d++l+l+KGgG+a+lrEK+v+ ++kr+++i+D+sK  ++lg +fp+Pve+ pf+  ++++k+e+       g+ a++r +  e+     +++vvTdngn+i+D+ f+k i+dp+ +++elk+++Gv+e+G+f+dmad v+v++k
  MMETSP1174-20130828|9801_1 444 RRVGYRAVDDYVESGMVIGLGTGSTAFFAVERVGQKLKSGELtNIIAVPTSEATRKQAEDLSIPLATLDTDGVLDVAIDGADAFDTNLDLVKGGGAAHLREKMVECSAKRLVIIVDSSKRCDHLGpSFPVPVEITPFCPGHTMRKIENlkslegLGCVARMRVKggEEerstgSTAVVTDNGNFIVDLVFSKPIQDPKPIADELKATVGVLEHGFFLDMADVVLVADK 671
                 78889999*******************************7777*****************************************************************************************************999999998877888888765322111114689************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.54
# Mc/sec: 1747.63
//
Query:       MMETSP1174-20130828|9804_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|9799_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00098   16.2   0.0      0.012   12.6   0.0    2.4  1  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
      0.001   16.1   0.0     0.0082   13.1   0.0    2.2  1  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.7e-06     0.012      39     114 ..      43     112 ..      12     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.7e-06
   TIGR03547  39 kekgWkkiaefpgaareqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgllGasav 114
                  +  W + a   + +r + + a + ++++vFgG+  +          ++ +y+++++sW+ ++  +  g + a av
  MMETSP1174-20130828|9799_1  43 ISDSWVSCAPLLTSRRLHGA-ACLSDRIFVFGGATDS-----DWATAEAESYSISDDSWQSIQPLPAAGKVAAAAV 112
                 56789999998888887665.56899*******9877.....3455688899999****99997777776665554 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     4e-06    0.0082     168     300 ..      63     206 ..      13     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4e-06
   TIGR03548 168 valknelYvfggg..daeaytdgyayslkknkWekvaa.vlsdeepisllGaasvklneskllviGGvnkkvfedAvkrleqlkde.........slksekkeYllkeaewyrfNdkvliydvrsnkwksigeseavAr.aGaall 300
                   l++ ++vfgg+  ++ a  ++  ys+++++W++++  +  +++  + +Ga    + +   + + G    +++   ++ ++l++          +++  +  Yl  ++   r+   +  yd++s+++++  ++++v r + aa++
  MMETSP1174-20130828|9799_1  63 ACLSDRIFVFGGAtdSDWATAEAESYSISDDSWQSIQPlPAAGKVAAAAVGAP--YYPDAVFVAMMGSKLLRYDILADTYATLAALplpdwhcfsMVAHGRFLYLIGGVTKGRWTGALFRYDTTSDQFEELPAMPTVRRrCAAAVV 206
                 4567889****76214457889999***********99666777777777765..577877777788777777766666666666567799999777888999999999999****************999999988651555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1046.14
//
Query:       MMETSP1174-20130828|9802_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 644.86
//
Query:       MMETSP1174-20130828|9809_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.4  10.1     0.0078   13.3   7.0    1.6  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   7.0   1.9e-06    0.0078      28      71 ..     127     175 ..     100     238 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-06
   TIGR00599  28 RChvCkdffkaP....vlt.sCsHtFCslCiRrcLseepkCPlCraedq 71 
                  C++C d +++     +lt +C+H F   C  r+L+   +CP Cr e  
  MMETSP1174-20130828|9809_1 127 MCQICFDSMDQSsqdtILTlPCGHAFHTACSQRWLQRSRMCPSCRYELT 175
                 5****9998753333377769************************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1073.51
//
Query:       MMETSP1174-20130828|9813_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|9816_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1251.62
//
Query:       MMETSP1174-20130828|9815_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1194.85
//
Query:       MMETSP1174-20130828|9821_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 170.31
//
Query:       MMETSP1174-20130828|9823_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|9824_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 392.09
//
Query:       MMETSP1174-20130828|9825_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1174-20130828|9828_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.1   4.6       0.63    7.8   3.2    1.7  2  TIGR01586 yopT_cys_prot: cysteine protease domain, YopT-type


Domain annotation for each model (and alignments):
>> TIGR01586  yopT_cys_prot: cysteine protease domain, YopT-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.2   0.00015      0.63      29     107 ..       9      87 ..       7     121 .. 0.65
   2 ?    1.6   0.1     0.012        50       2      40 ..      81     121 ..      80     132 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00015
   TIGR01586  29 edagqassrmerlnllgskda.hasetqqsyeqlklslskqraaqrf......gdfalidellqkqglkelglekvlharsksale 107
                 +++++a s me+ + + ++      ++qq++++ ++  +       +      +++++ide +q+++   +g+ +vl+ r++  ++
  MMETSP1174-20130828|9828_1   9 HKTSEAVSGMEQSYRDLQGTYqALLQRQQTLRASRSTQM-------GdletvtSQLTGIDETMQQKEERNKGNDPVLEIRRATQVL 87 
                 566677777777777754444222333444444333333.......33333449999*********99999999999999988443 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.012
   TIGR01586   2 arhpqaalydrnqegvClGLsllWlrledagq..assrmer 40 
                 +r+ q ++ +  +   C +  +++l + ++    +ss+  +
  MMETSP1174-20130828|9828_1  81 RRATQVLKQEVRTLELCTAINAHYLSTAQKTRgsSSSSSSH 121
                 56667777777788999999999999988766334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.66
# Mc/sec: 267.98
//
Query:       MMETSP1174-20130828|9829_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 545.79
//
Query:       MMETSP1174-20130828|9827_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 718.61
//
Query:       MMETSP1174-20130828|9834_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 678.28
//
Query:       MMETSP1174-20130828|9838_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1174-20130828|9841_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 588.29
//
Query:       MMETSP1174-20130828|9843_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1174-20130828|9842_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1112.01
//
Query:       MMETSP1174-20130828|9846_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1174-20130828|9845_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-71  237.2   0.0    8.5e-71  236.7   0.0    1.1  1  TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
    6.1e-13   45.7   2.5    2.2e-06   24.0   0.0    2.8  3  TIGR00134 gatE_arch: glutamyl-tRNA(Gln) amidotransferase, subunit E


Domain annotation for each model (and alignments):
>> TIGR00133  gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.7   0.0   4.1e-74   8.5e-71     142     480 ..      17     402 ..       6     403 .. 0.89

  Alignments for each domain:
  == domain 1    score: 236.7 bits;  conditional E-value: 4.1e-74
   TIGR00133 142 kqslvDfNRsgvPLlEiVtkPdlksakearaflkklrqilryleisdgdleeGsmRvDvNvsirlkGqe...kegtrvEiKNlnslksiekaieyEieRqkkllkkgeevkqetrafdekksitvslRkKeeseDYRYfpePdlppieideevvkekveeklpelPeakrirlkke....yglseedakvlvsdle.........................lldafeevvklikep.....klavnWileellgeLnkkkislaea....llkpeelaeliklikegkisqksakelleellen.......kkdpkklieklgliqisdekelvkiveevikenpkevekyk........sgkekalkflvGqvmkktkgradpkevekllkell 480
                   slvD+NR+gv L+E+V  Pdl+sa ea + ++ +r++lr+++  dg +e  ++RvD Nvs+    ++   k+  rvE+KN+ns++ +e+a  +Ei+Rq+ +l kg  v +etr +d ++ +t  lR+K+++ DYR+++ePdlpp+++++e++++ ++++lpelP+ + +r+ ++    yglse+da+v+vs+ +                                v+++ +++     k+++n i+++l ++  ++++s+ +      l+p +++el++l+++++is k+ak++++ + +        +k+p +++e++g  q++d  el +i  +v++ + ++v + +        ++  k+lkflvG  mk tkg a p++ ++ ++  l
  MMETSP1174-20130828|9845_1  17 AGSLVDLNRAGVSLVELVLGPDLRSASEAGETMRTMRALLRHMGACDGSME--AFRVDLNVSMVELDDDesiKKAVRVEVKNINSVRYLEAAAAFEIQRQSGVLGKGLPVARETRGYDPQSRSTYLLRSKDTAPDYRFMQEPDLPPVVLSDETIER-LRATLPELPKDMCARYSSPppigYGLSEYDARVIVSEPSaaalmdmvmaqqegeeekegigyssS------VTSSHQHSpiiapKAVANLIMNDLFAVAAEQSTSVGALiedlSLDPCHVTELLRLVENHTISTKIAKKVFRLMTSPrpltsspRKSPASIVEEEGWRQVTDAAELEAIAWAVLDGHSDDVIQWRtatetkqkKRAGKILKFLVGAGMKSTKGLAAPQRLQQAIETAL 402
                 469*********************************************996..8********876643312267789*****************************************************************************99.****************97555559**************999999999999999999996664331......3333222234444*************99999988755444459*****************************999899999999************************************998777777654566789***********************999877 PP

>> TIGR00134  gatE_arch: glutamyl-tRNA(Gln) amidotransferase, subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-09   2.2e-06     172     261 ..      19     117 ..      11     120 .. 0.88
   2 !   19.9   0.1   1.9e-08     4e-05     397     457 ..     124     187 ..     119     218 .. 0.79
   3 ?    0.0   0.0      0.02        40     501     604 ..     264     388 ..     247     403 .. 0.59

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.1e-09
   TIGR00134 172 vvysldrlGiplveistepdikspkmakevaariGeilrstgkvkrGlGtirqdvnis.........irdGarvevkGvqdldliekiverevlrqlnl 261
                  + +l+r G+ lve+   pd+ s   a e  + +  +lr  g     + + r d+n+s         i+   rvevk ++ +  +e     e++rq  +
  MMETSP1174-20130828|9845_1  19 SLVDLNRAGVSLVELVLGPDLRSASEAGETMRTMRALLRHMGACDGSMEAFRVDLNVSmveldddesIKKAVRVEVKNINSVRYLEAAAAFEIQRQSGV 117
                 45689***************************************************964444344448999************************9765 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.9e-08
   TIGR00134 397 vpeetrkaledGntayl.rplpgaa..rmypetdippvvikeelleeiranlpelpeekaerlk 457
                 v  etr   ++  ++yl r   +a   r   e d+ppvv+ +e +e +ra lpelp++   r+ 
  MMETSP1174-20130828|9845_1 124 VARETRGYDPQSRSTYLlRSKDTAPdyRFMQEPDLPPVVLSDETIERLRATLPELPKDMCARYS 187
                 6679999988888777537777764449999**************************9988876 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.02
   TIGR00134 501 lkelrreGvdidkleer..elrevlklleeGkiakegleevlklla......eepdkaedearklk..lkllakeeiekiieeiieekld.li..........kerGegafgplmGrvmkklrGk 604
                  ++    G  i+ l  +  ++ e l+l+e+  i+ + +++v++l++        p k+  ++ + +   ++  + e+e i   +++++ d +i          k+r  + +++l+G  mk  +G 
  MMETSP1174-20130828|9845_1 264 AEQSTSVGALIEDLSLDpcHVTELLRLVENHTISTKIAKKVFRLMTsprpltSSPRKSPASIVEEEgwRQVTDAAELEAIAWAVLDGHSDdVIqwrtatetkqKKRAGKILKFLVGAGMKSTKGL 388
                 55555556666665544338888899999888888888888887751111114566666666666555566777788888888888876425522222211112233445666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.62
# Mc/sec: 874.96
//
Query:       MMETSP1174-20130828|9847_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 733.61
//
Query:       MMETSP1174-20130828|9851_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   17.3   1.6    0.00043   17.3   1.1    1.9  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.1     1e-07   0.00043     101     173 ..      99     171 ..      92     181 .. 0.83
   2 ?   -0.7   0.4      0.03   1.2e+02     301     327 ..     207     233 ..     196     244 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-07
   TIGR00155 101 itgtlvllcvvvvPiilvllilllvlakelqvklrevllvlerlkeWvmldiylvgvgvaivkvreyasievg 173
                  + t  +++ +v+P+ ++  +l+l+++     +   v+ + e  ++W  +++++ ++  ai+ +  +a   +g
  MMETSP1174-20130828|9851_1  99 WLQTCYFVFTLVMPLAFLCIMLFLWVTPLNLRRFSAVFKLAEVCQAWSSVEVFVLSIIFAILEIATFADFIIG 171
                 5678899******************97644444555666888899********************99987766 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.03
   TIGR00155 301 avvflasilvPilkvivilylllsvkf 327
                  v+f as++v ++  +v+  +l s++ 
  MMETSP1174-20130828|9851_1 207 PVLFSASLVVIVMAYFVLNKVLHSIHQ 233
                 478888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1008.53
//
Query:       MMETSP1174-20130828|9849_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 1595.87
//
Query:       MMETSP1174-20130828|9852_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1306.24
//
Query:       MMETSP1174-20130828|9855_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 827.13
//
Query:       MMETSP1174-20130828|9856_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-42  141.9   0.6    6.5e-42  141.7   0.4    1.0  1  TIGR00955 3a01204: pigment precursor permease
    5.4e-21   71.8   0.1    6.6e-21   71.5   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.4   3.2e-45   6.5e-42     334     612 ..      38     316 ..       7     317 .] 0.89

  Alignments for each domain:
  == domain 1    score: 141.7 bits;  conditional E-value: 3.2e-45
   TIGR00955 334 k...ykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylg.qe.....ltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeielleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllaylalrir 612
                     y +s+  q+ +l kR++ls  +     ++ +  v++++vl ++++++  +     l++k vq+i+g lF+      Fq +f+++ +f+ e+ ++ +E a glY+ls++y++ktla+  l++++p++ + i Y + gl++    f   l+l++l a+ a+s gll++c+f +t+ a+ +  ++++  +l+gGf++  +   vy++w++y+S+ +Y + a++  +++++++ ++    + + c+ s+   L  l+++ + + + + +++++ +v r+++y+al+ir
  MMETSP1174-20130828|9856_1  38 GaggYVTSYRQQLSILTKRAFLSR-KGHSTDRLFVFTVLAISVLSAALWWQrGGngsdvLSEKDVQDISGCLFFQGIFWSFQIMFQALLTFPMERDIMQKERAVGLYHLSSFYIGKTLADTGLIVVMPVICAPIYYFSCGLRPA--GFPAHLALLLLNAVTAQSWGLLFGCVFMDTKHATVFQSVFMLATMLTGGFYVRNQL--VYLQWIEYFSFSKYVYTAMAKIEFTSTRRFKC----DGGLCDVSDAPSLAALDMSGTSMFEAVGVIIMWGIVARVIGYFALKIR 316
                 2555999***************86.55556677788899999********8432333336899******************************************************************************985..7999999999******************************************8776..69***************************886....5668*****************************************997 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   3.2e-24   6.6e-21     396     620 ..      42     269 ..      20     290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 3.2e-24
   TIGR00956 396 ytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlek......ntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrrea.grFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefh.arefecs 620
                 y+ s+ qq+ ++++R +l  kg  +  l  v++ ++ +++ ++++++         +++d+    g lff  +f +f+ + + +  +  +r i++k+r+  lyh s++ ++ +l++  + +++ v+   i+yf  +lr+    + +  lL+++++++  + lF ++       ++A++  ++++la +l +gf + ++    +++Wi+y +  +y++ ++   ef   r+f+c+
  MMETSP1174-20130828|9856_1  42 YVTSYRQQLSILTKRAFLSRKGHSTDRL-FVFTVLAISVLSAALWWQRGGngsdvlSEKDVQDISGCLFFQGIFWSFQIMFQALLTFpMERDIMQKERAVGLYHLSSFYIGKTLADTGLIVVMPVICAPIYYFSCGLRPAGfPAHLALLLLNAVTAQSWGLLFGCV---FMDTKHATVFQSVFMLATMLTGGFYVRNQL--VYLQWIEYFSFSKYVYTAMAKIEFTsTRRFKCD 269
                 999**************99988776665.5899999**********98874445556667777789************887655554279************************************************9752578889999999******999776...555689********************9875..589*********************73589*997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 996.20
//
Query:       MMETSP1174-20130828|9857_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.7   1.6        0.4    8.4   0.2    2.3  2  TIGR03260 met_CoM_red_D: methyl-coenzyme M reductase operon protein D


Domain annotation for each model (and alignments):
>> TIGR03260  met_CoM_red_D: methyl-coenzyme M reductase operon protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   9.9e-05       0.4      55      98 ..     114     157 ..     109     191 .. 0.81
   2 ?    1.6   0.0     0.012        50      44      81 ..     194     227 ..     190     233 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.9e-05
   TIGR03260  55 serktikvkgeevelrvkvGrillevedediveeveeickellp 98 
                 se + +kv++++ +l+ k  +  +eve e+  +++e+ c e l+
  MMETSP1174-20130828|9857_1 114 SEMARLKVEVVKAHLKTKLNKARVEVEMESLKQDLEKTCLEALR 157
                 566788999******************************99886 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.012
   TIGR03260  44 yGParGlpvnhserktikvkgeevelrvkvGrilleve 81 
                 +G a+ +  +h+ + +ik+ g    l+v vG+ ++e e
  MMETSP1174-20130828|9857_1 194 LGFAQNEVLKHTLQPKIKITG----LKVDVGKTCVETE 227
                 566777777888888888877....6677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1174-20130828|9860_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|9862_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|9863_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|9864_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|9866_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 838.13
//
Query:       MMETSP1174-20130828|9869_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 258.70
//
Query:       MMETSP1174-20130828|9871_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1174-20130828|9874_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1048.37
//
Query:       MMETSP1174-20130828|9875_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-96  320.9   0.0    1.7e-96  320.7   0.0    1.0  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase
    3.2e-36  122.8   0.0    4.1e-36  122.5   0.0    1.1  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
    1.1e-09   35.7   0.0    1.3e-08   32.1   0.0    2.0  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase
    5.7e-06   23.5   0.0    0.00083   16.4   0.0    2.1  2  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.7   0.0   1.7e-99   1.7e-96       1     311 [.      94     400 ..      94     402 .] 0.97

  Alignments for each domain:
  == domain 1    score: 320.7 bits;  conditional E-value: 1.7e-99
   TIGR01123   1 Wdeaelas.eaeleldegsavlhYgqevfeGlkayRtadGkillfRpdanakRlrrsaerlllPeleeelflealkqlvkadkdwvpkakseasLYlRPfliatednlGvkaakeylflvlasPvGaYfkgg.lapvsifveteyvRaapkGtGavkvgGnYaasllaqkkaaeqglddvvyldpvekkkieevGaaniflitkdgelvttplsesiLegvtresllelakdlgleveereiaidelkaaveaGeivfacGtaavitPvgelkiegkevevkseevGevtkklrdeltdiqyGkledkegWiv 311
                 Wde+el++ e +++++ + ++lhYgq vfeGlka+ ++dG++ +fRpd+nakR+ rsa+r ++P l+ + f+ a ++lv+ + d+vp+ +s+ +LY+RP+l++ ++ +G  ++ ey+++ la PvG+Y++gg l+pv+  v + y+Raap+G+G vkv+GnYaa l+++++ +++g+   +yld+ +++ +ee  ++n+f+it+dg+ v tp+s+ +L+++t + l+ lakd g ev+ r i + el+ ++e      acGta vitP+ ++++++ke+ + ++ +G+vt++l++ l  +q+G+ +d+ gW v
  MMETSP1174-20130828|9875_1  94 WDEGELVAgEPTMNVHVACTALHYGQSVFEGLKAFAWEDGSVRVFRPDENAKRMARSADRTMMPSLPVDDFVAATQRLVRDNLDYVPPPSSKGALYIRPLLFGSGPRIGLSPSDEYTLIFLAMPVGDYYAGGkLTPVKGRVVEGYDRAAPNGVGDVKVAGNYAADLKPNQQMKKDGFPIGLYLDARTNTLVEEFSTSNFFGITEDGTYV-TPESPAVLPSITNKCLMDLAKDEGREVQRRPIPVTELDSFKEVA----ACGTAVVITPIRSIQHGEKEYFFGDK-TGPVTQHLYQRLRAMQTGEEADTLGWSV 400
                 99999877255799*********************************************************************************************************************999***********************************************************************8766.5789*************************************988....************************99.**************************76 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0     4e-39   4.1e-36       1     294 [.      94     398 ..      94     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: 122.5 bits;  conditional E-value: 4e-39
   TIGR01122   1 wldGelvdve.dakvhvlthalhYGtgvfeGiRaYetdkg.laifrlkehveRlydsakilrleipyskeelvevtkevlrkn........nlksaYiRplvyvGaedlglkpkvdlkveviiaawewgaylgeealekGikvkvssfrraavnsiptkakaagnYlnsllaksealraGydeailLde..eGyvaeGsGenif.ivkdgvlltPpvsesiLkgitrdaviklakelgievkeerisreelytaDevfltGtaaevtPirevDgrk...igegkrGpvtkklqeaffdlvegktekkeew 294
                 w +Gelv  e   +vhv   alhYG++vfeG++a+  ++g  ++fr +e ++R+  sa  + ++ ++  +++v +t+ ++r n             YiRpl++     +gl+p +d + ++i  a+++g y+    l       v  + raa+n +   +k+agnY   l  +++ ++ G+  ++ Ld   +  v e s  n+f i +dg+ +tP+   ++L +it   +++lak++g ev++++i  +el    ev   Gta  +tPir++ + +       k+Gpvt++l ++   + +g++ ++ +w
  MMETSP1174-20130828|9875_1  94 WDEGELVAGEpTMNVHVACTALHYGQSVFEGLKAFAWEDGsVRVFRPDENAKRMARSADRTMMP-SLPVDDFVAATQRLVRDNldyvpppsSKGALYIRPLLFGSGPRIGLSP-SD-EYTLIFLAMPVGDYYAGGKLTPVKGRVVEGYDRAAPNGV-GDVKVAGNYAADLKPNQQMKKDGFPIGLYLDArtNTLVEEFSTSNFFgITEDGTYVTPES-PAVLPSITNKCLMDLAKDEGREVQRRPIPVTELDSFKEVAACGTAVVITPIRSIQHGEkeyFFGDKTGPVTQHLYQRLRAMQTGEEADTLGW 398
                 77999998772568*********************98886157****************99887.678899999***9999874333322122348*******88889*****.66.899999*********97666554445567899*999987.689****************************62256799********4557899999999.88****************************************************8654122456799***********99999999888887 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.033        34      22      79 ..     114     175 ..      97     209 .. 0.75
   2 !   32.1   0.0   1.3e-11   1.3e-08     171     272 ..     281     385 ..     272     388 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.033
   TIGR01121  22 GyqfGdGvyevirvy...nG..klftleehidrlyasaakirldlpyskeelkellkelvekn 79 
                    +G  v+e ++++   +G  ++f  +e ++r+ +sa++  +  +  ++++    + lv+ n
  MMETSP1174-20130828|9875_1 114 ALHYGQSVFEGLKAFaweDGsvRVFRPDENAKRMARSADRTMM-PSLPVDDFVAATQRLVRDN 175
                 567899999999988444452257999***********98654.4666788888888888777 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1.3e-11
   TIGR01121 171 delvtegsssnvyaikdgvlythpannlilnGitrkvilklaeenglpvkeealtkeelkeadevfvssttaevtPvveid.Gqq..igdGkvGpltkklqkafe 272
                 + lv e s+sn ++i ++  y  p    +l  it k +++la+++g +v+ +++ ++el +  ev    t++ +tP+ +i  G++      k+Gp+t++l + ++
  MMETSP1174-20130828|9875_1 281 NTLVEEFSTSNFFGITEDGTYVTPESPAVLPSITNKCLMDLAKDEGREVQRRPIPVTELDSFKEVAACGTAVVITPIRSIQhGEKeyFFGDKTGPVTQHLYQRLR 385
                 5578999***********************************************************************996344322556799******998775 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0022       2.3       2      66 ..     100     169 ..      99     179 .. 0.79
   2 !   16.4   0.0   8.1e-07   0.00083     152     247 ..     265     364 ..     261     382 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0022
   TIGR03461   2 vngveqesisvsdRalqyGDGlFtTakv...kdgkvell..eaHleRLqkaaerLliklvdweeleeela 66 
                 v g+++ +++v   al+yG  +F+ +k    +dg+v ++  ++  +R++++a+r ++++  ++   +  +
  MMETSP1174-20130828|9875_1 100 VAGEPTMNVHVACTALHYGQSVFEGLKAfawEDGSVRVFrpDENAKRMARSADRTMMPSLPVDDFVAATQ 169
                 8899999****************99875333799999993347899******999999877776655555 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 8.1e-07
   TIGR03461 152 lekseadealvldte.gk.vvEataaNlfwvk.enkvfTpsLsesGvaGvmrqlvlellkkleveievvkvsleelasadevfitNsllgvvpvkkie..e 247
                 ++k+ +  +l ld + ++ v E +++N f ++ +++ +Tp+ s + +  +  + ++ l+k+++ e++   + + el s  ev  + + + + p+++i+  e
  MMETSP1174-20130828|9875_1 265 MKKDGFPIGLYLDARtNTlVEEFSTSNFFGITeDGTYVTPE-SPAVLPSITNKCLMDLAKDEGREVQRRPIPVTELDSFKEVAACGTAVVITPIRSIQhgE 364
                 5666666677788641331557899****776156777887.78899**************************************************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1607.87
//
Query:       MMETSP1174-20130828|9873_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-47  158.5   0.0    7.8e-47  157.8   0.0    1.2  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    2.2e-17   61.3   0.0    3.5e-17   60.6   0.0    1.3  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    4.4e-09   33.7   0.0    1.1e-07   29.1   0.0    2.1  2  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
    9.3e-07   26.2   0.1    5.7e-06   23.6   0.0    1.9  2  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
      1e-05   22.9   0.0    2.3e-05   21.7   0.0    1.5  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    4.5e-05   20.9   0.0    6.7e-05   20.4   0.0    1.2  1  TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
     0.0001   18.7   0.0    0.00015   18.1   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0021   15.5   0.1     0.0067   13.9   0.0    1.7  2  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
     0.0054   13.9   1.2      0.016   12.3   0.0    2.1  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.0   1.7e-49   7.8e-47      13     236 ..      16     239 ..      13     274 .. 0.90

  Alignments for each domain:
  == domain 1    score: 157.8 bits;  conditional E-value: 1.7e-49
   TIGR00737  13 aPlagvtdlafRrlvkeyeaglvvsEmvssealveks.ektkklleiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTr..aqlyeGeanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeie 236
                 +P+ + ++l+fR l+++ +a l+++ m+ ++   e+  +   ++ ++a + +p  vQ +g +p+v+  aA   ++   d +DlN+GCP     k   G+ ll+e+el+ +iv+++++  +vP  vKiR+  d+e   + + ar++ +aGa+++ +HgRTr   q     a+w  i+r+k+av+iPVi+nG i  ped   +L+ tg+d+v+ +  +l  P +f+++e
  MMETSP1174-20130828|9873_1  16 SPMVDQSELPFRMLARKHGADLCYTPMIHARLFNERDdAYRARVFTTAPEDRPLFVQFCGHEPEVLLSAAL-RVQDRCDAVDLNLGCPQGIARKGRYGAFLLEEEELVLRIVRTLANKLDVPLSVKIRLLPDQER--TIDYARRIVEAGASILCVHGRTRdmKQQQTSAADWSLIKRIKEAVRIPVIANGNIARPEDVDDCLNVTGVDAVMSSEMSLCFPDVFRRVE 239
                 7******************************99998834567889999******************99885.5566799**********9999999********************************9777654..568999999*************94447778899*********************************************999999999876 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   7.7e-20   3.5e-17       6     237 ..      16     239 ..      12     277 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 7.7e-20
   TIGR00742   6 aPmlditdrhfryllrllskkvllytemvtakaiihgd...kkkllkfseeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksleeikkhlsf..vdsvmvGreayenPyllaavd 237
                 +Pm+d ++  fr l r+     l yt+m+ a+     d   + ++    +e++P+ +q+ g++pe l+ +a  ++++  d ++ln+GcP    ++g +Ga l+ + +lv  iv+++ ++ ++P++vk r+  d+    e  +d+ + + ++G   + vh r   +k       ++    ++  + ++k    ++ +  nG i + e++ + l+   vd+vm    +   P ++ +v+
  MMETSP1174-20130828|9873_1  16 SPMVDQSELPFRMLARKHGA-DLCYTPMIHARLFNERDdayRARVFTTAPEDRPLFVQFCGHEPEVLLSAALRVQDR-CDAVDLNLGCPQGIARKGRYGAFLLEEEELVLRIVRTLANKLDVPLSVKIRLLPDQ----ERTIDYARRIVEAGASILCVHGRTRDMK------QQQTSAADWSLIKRIKEAV-RIPVIANGNIARPEDVDDCLNVtgVDAVMSSEMSLCFPDVFRRVE 239
                 69**************9876.589*******998876533367889999*****************99988767765.69***********************************************9996654....678999*****************87654......3455667888877776554.555666888998888888876444888887777776666666665 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.4e-10   1.1e-07      90     196 ..      66     175 ..      46     181 .. 0.83
   2 ?    4.0   0.0     0.011       4.8     128     186 ..     166     222 ..     163     227 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.4e-10
   TIGR01037  90 dtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkg....aGieiGqdpelsaevvkavkekvdkPvlak..LsPnvtdivelakaveeaGaDgltlintlkgmk 196
                 d++l ++  G+++e   ++a +++  d   da++Ln+ CP+  +    +G+ + ++ el+ ++v  + +k d+P+++k  L P+ +  ++ a+ ++eaGa  l +    + mk
  MMETSP1174-20130828|9873_1  66 DRPLFVQFCGHEPEVLLSAALRVQ--D-RCDAVDLNLGCPQGIArkgrYGAFLLEEEELVLRIVRTLANKLDVPLSVKirLLPDQERTIDYARRIVEAGASILCVHGRTRDMK 175
                 556999999*****9999999999..4.499*********853222479*************************99984468******************9998877666665 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
   TIGR01037 128 CPhvkgaGieiGqdpelsaevvkavkekvdkPvlakLsPnvtdivelakaveeaGaDgl 186
                 C h ++  ++  q      +++k++ke+v +Pv+a    n++   ++  ++  +G+D++
  MMETSP1174-20130828|9873_1 166 CVHGRTRDMKQQQTSAADWSLIKRIKEAVRIPVIAN--GNIARPEDVDDCLNVTGVDAV 222
                 777777788888888888899999999999999986..456666666666666666665 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.067        31      57      98 ..     117     163 ..     114     171 .. 0.68
   2 !   23.6   0.0   1.3e-08   5.7e-06     157     230 ..     150     226 ..     145     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.067
   TIGR00735  57 ekretmlevvervaekvfiPltvgGGiksiedvk.......kllraGad 98 
                 e++e +l +v+  a+k+++Pl+v   i+ + d +       ++++aGa 
  MMETSP1174-20130828|9873_1 117 EEEELVLRIVRTLANKLDVPLSVK--IRLLPDQErtidyarRIVEAGAS 163
                 567889999*************96..44444333222333366666665 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.3e-08
   TIGR00735 157 vvewakeveelGaGeilltsmdkdGtk...sGydlellkkvkeavkiPviasgGaGkaehleeaflkgkadaaLaas 230
                 ++++a+++ e Ga  + +    +d ++   s  d +l+k++keav+iPvia g + ++e + +++  + +da++++ 
  MMETSP1174-20130828|9873_1 150 TIDYARRIVEAGASILCVHGRTRDMKQqqtSAADWSLIKRIKEAVRIPVIANGNIARPEDVDDCLNVTGVDAVMSSE 226
                 678999999999999999888877655112578***************************************99765 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.82   3.7e+02      61      97 ..     121     162 ..     117     176 .. 0.62
   2 !   21.7   0.0     5e-08   2.3e-05     158     229 ..     153     227 ..     145     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.82
   TIGR03572  61 kllelieklaeevfvPltvgGGi.....ksledvkkllkaGa 97 
                   l ++++la+++ vPl+v   +     ++++ ++++++aGa
  MMETSP1174-20130828|9873_1 121 LVLRIVRTLANKLDVPLSVKIRLlpdqeRTIDYARRIVEAGA 162
                 566788888888888888753222222245555566666665 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5e-08
   TIGR03572 158 lareleelgagEillnsiDrdGtrk...GydlelvktvskavkiPvialGGagslddlvevvleagasavaaasl 229
                 +ar++ e+ga  + ++   rd +++     d  l+k++++av+iPvia+G +++ +d+ + +  +g++av  +++
  MMETSP1174-20130828|9873_1 153 YARRIVEAGASILCVHGRTRDMKQQqtsAADWSLIKRIKEAVRIPVIANGNIARPEDVDDCLNVTGVDAVMSSEM 227
                 555566666666666555555444311156999*************************************98876 PP

>> TIGR00736  nifR3_rel_arch: putative TIM-barrel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.5e-07   6.7e-05      84     210 ..      83     214 ..      63     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.5e-07
   TIGR00736  84 dvelsvaesadiieinahCrqPeiteiGiGqellknkelLkefvakvk.karkpvfvkirgnvikldevkvarklvdagvdaihv.....dalkPGedradlelvklvsevkndkiviGnnsvddiesakell 210
                   +l v +  d +++n  C q    +   G  ll ++el+  +v  +  k+  p++vkir+   +  ++  ar++v+ag   + v     d  +     ad +l+k++ e      vi n  +   e   + l
  MMETSP1174-20130828|9873_1  83 SAALRVQDRCDAVDLNLGCPQGIARKGRYGAFLLEEEELVLRIVRTLAnKLDVPLSVKIRLLPDQERTIDYARRIVEAGASILCVhgrtrDMKQQQTSAADWSLIKRIKEAVR-IPVIANGNIARPEDVDDCL 214
                 5667788999***********87777779**********999999888799**********8888899999******99877766223334445566789********99988.5578887777666665555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.2e-07   0.00015     240     326 ..     147     237 ..     134     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.2e-07
   TIGR03997 240 atglvDyln..tsigvaletLhlveasmavppgyaaela..aaireavdlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPelaak 326
                 ++ ++Dy    +++g ++  +h  +  m+ ++  aa  +    i+eav++Pv+a G i +p+  +  l+   +d v      ++ P++ ++
  MMETSP1174-20130828|9873_1 147 QERTIDYARriVEAGASILCVHGRTRDMKQQQTSAADWSliKRIKEAVRIPVIANGNIARPEDVDDCLNVTGVDAVMSSEMSLCFPDVFRR 237
                 5567788763356677788888888889998888886552278**************************999****999999999987766 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05    0.0067     117     166 ..     152     202 ..     126     219 .. 0.85
   2 ?   -1.6   0.0      0.81   3.7e+02      34      68 ..     369     403 ..     355     427 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
   TIGR03128 117 krakelkelGvdiiavHtGlDeqakgkkpledLetllkvvkevkv.avAGG 166
                 + a+ + e+G++i++vH  +   ++++++ +d + +++++++v++  +A G
  MMETSP1174-20130828|9873_1 152 DYARRIVEAGASILCVHGRTRDMKQQQTSAADWSLIKRIKEAVRIpVIANG 202
                 468999***********999889999*******************777766 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.81
   TIGR03128  34 likeeGleavkelkeafpekkvlaDlKimDageyE 68 
                 + k+ Gl + k+++++++++ +  + K +  g++ 
  MMETSP1174-20130828|9873_1 369 TAKNGGLPLSKRMRNRAKRQAMRDERKKAKHGHHS 403
                 56888999999999999988877777777777664 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.6e-05     0.016     120     173 ..     152     207 ..     120     227 .. 0.80
   2 ?   -0.2   0.2      0.22     1e+02      18      58 ..     356     398 ..     351     408 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.6e-05
   TIGR03151 120 alakrleklGadaviaeGmeaGGh..iGelttlalvpqvvdavsiPviaaGGiadg 173
                   a+r+  +Ga  + + G     +      +  +l++++ +av iPvia G ia  
  MMETSP1174-20130828|9873_1 152 DYARRIVEAGASILCVHGRTRDMKqqQTSAADWSLIKRIKEAVRIPVIANGNIARP 207
                 5688999999999999987655440045566789*******************865 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.22
   TIGR03151  18 gmawvataelaaavseaGGlGiiga..Gnapkdvvkkeikkvk 58 
                 +m  + +a +aaa ++ GGl +       a+++ +++e kk k
  MMETSP1174-20130828|9873_1 356 AMGLAMDAAVAAATAKNGGLPLSKRmrNRAKRQAMRDERKKAK 398
                 688889999**********987543113445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 1267.10
//
Query:       MMETSP1174-20130828|9876_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-138  460.5   1.3    1.3e-54  183.7   0.0    3.0  3  TIGR02316 propion_prpE: propionate--CoA ligase
   4.9e-129  429.2   0.0    4.1e-50  168.5   0.0    3.0  3  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.1e-37  127.3   0.3    3.3e-16   56.4   0.0    3.0  3  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
      5e-33  112.4   0.1    2.5e-19   67.2   0.0    3.0  3  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.1e-30  104.8   0.4    4.9e-13   46.4   0.0    3.1  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    9.5e-29   98.2   0.1    1.4e-11   41.6   0.0    3.1  3  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    3.3e-24   83.1   0.1    4.3e-12   43.1   0.0    2.9  3  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    7.5e-23   78.5   1.7    6.2e-14   49.1   0.0    3.1  3  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    3.4e-22   76.7   0.0    1.4e-14   51.6   0.0    3.1  3  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    9.9e-18   61.5   0.0    3.9e-10   36.4   0.0    2.4  3  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.2e-10   37.0   0.0    2.9e-05   20.6   0.0    2.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    2.2e-09   33.1   0.2    6.6e-05   18.2   0.0    2.2  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    9.9e-09   32.1   0.6    2.4e-08   30.9   0.1    1.8  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   4.3e-57   1.3e-54       3     198 ..      18     218 ..      16     234 .. 0.85
   2 !  131.6   0.1   2.4e-41   7.5e-39     288     434 ..     238     385 ..     232     410 .. 0.90
   3 !  142.8   0.0   9.8e-45   3.1e-42     445     620 ..     444     620 ..     435     628 .. 0.89

  Alignments for each domain:
  == domain 1    score: 183.7 bits;  conditional E-value: 4.3e-57
   TIGR02316   3 yeelyqrsieepeafwaeqa..rridw.qtpfarvlddsnlpfarwfvggrtnlcynavdrhle.krgeqlalvavssetgeertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadagarg.gkvieykklldaaiaeaq..hkpahvllvdrg 198
                 ye+l + s     ++w + a   ++dw q p  +v d   + f  wf +gr nlcynavdrh++  r+ q a+   s   g+ r ++y++l + v + a+al  lgv+ gd v+iy+pm++ea  a+lac riga+hsvvfggfas++la+r+dda pk++++a +g  g  kv++y +ll++ai+ ++  ++p+hv+++dr 
  MMETSP1174-20130828|9876_1  18 YENLMRMSA--HPQYWLDYAcsGALDWfQEPTVAVDDSLAPHFYSWFPDGRINLCYNAVDRHVAgGRASQTAIAFHSNVGGRSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITATCGLEGeTKVVPYLPLLEEAITLTRedRRPEHVVVLDRP 218
                 555555553..34688877622579*94555556656667779*******************983589999999999999****************************************************************************************99569************98752268********95 PP

  == domain 2    score: 131.6 bits;  conditional E-value: 2.4e-41
   TIGR02316 288 ghsyivyapllaglatvlyeglpt.rpdggvwwsivekyrvsvmfsaptairvlkkqdaa..llrkhdlsslevlflagepldeptarwisdalgkpvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgp 434
                 g +  v  pll g +tv+yeg p+ +pd+g +w ++++y v +mf+apta+r +++ d+   + r hdlssl+++f+age  d  t +  ++ l++pv+d +wqtetgwp+  ++   ++   k gs glpv+gy+++v++  +g ++  
  MMETSP1174-20130828|9876_1 238 GTASSVSXPLLMGCTTVMYEGKPVgTPDAGAYWDVIDRYSVGAMFTAPTALRAIRRLDPEidMARTHDLSSLKTVFVAGERADPETVSHFAERLNVPVVDHWWQTETGWPMCGMQD--AEVGCKPGSCGLPVPGYDIRVMNGPAGGPIER 385
                 66778999***************967*******************************98522689**********************************************98876..4678899****************999988764 PP

  == domain 3    score: 142.8 bits;  conditional E-value: 9.8e-45
   TIGR02316 445 plppgclstvwgddarflktyfsafkrl....lyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrsgkllrraiqavaegrdpgdlt...tiddpaale 620
                  lppg ++t++g++  +++ y   f+++     +++ d g  dedgy+ ++grtddv+nvaghrl t  +ee+vs+h++vae av+g  d+lkg v+v++ +l+    v+ ++    + +e+++lv +++g va   +  +v+ lpktrsgk+lr  ++++aeg++  dl    ti+d  a+e
  MMETSP1174-20130828|9876_1 444 RLPPGVMTTLFGENDSYVEKYLEEFTDPqggtWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLR----VGAEE--GGVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMRSLAEGKEGEDLKipgTIEDARAVE 620
                 48***********************987333358889******************************************************************9....55444..4567789***********************************************95444899988876 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   0.0   1.3e-52   4.1e-50       6     206 ..      17     220 ..      13     234 .. 0.88
   2 !  101.3   0.1   2.9e-32   9.2e-30     300     457 ..     243     403 ..     234     411 .. 0.87
   3 !  155.7   0.0   9.9e-49   3.1e-46     456     624 ..     447     620 ..     434     624 .. 0.92

  Alignments for each domain:
  == domain 1    score: 168.5 bits;  conditional E-value: 1.3e-52
   TIGR02188   6 eykelyeeaiedpekfwaklakeelewlkpfekvldeslep.kvkWfedgelnvsyncvdrhvek.rkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRgg.kvielkkivdealekaee..svekvlvvkrtge 206
                 +y++l++ ++ +p+ + +   +  l+w+++ +  +d+sl+p ++ Wf dg++n++yn+vdrhv+  r+ ++ai + ++  g+ sr ++Y++ll++v+ +a++l++lGv +gd v+iY+pm+pea  amlac RiGavhsvvf+Gf++  la R+ da+ k+vita  gl g+ kv++     +ea++ + e  + e+v+v+ r + 
  MMETSP1174-20130828|9876_1  17 KYENLMRMSA-HPQYWLDYACSGALDWFQEPTVAVDDSLAPhFYSWFPDGRINLCYNAVDRHVAGgRASQTAIAFHSNVGGR-SRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITATCGLEGEtKVVPYLPLLEEAITLTREdrRPEHVVVLDRPEV 220
                 5667766654.3444445556779*********999999998**********************99************8886.***********************************************************************************9998753889999*****9987665558999999998764 PP

  == domain 2    score: 101.3 bits;  conditional E-value: 2.9e-32
   TIGR02188 300 vygPLanGattllfegvpt.ypdasrfweviekykvtifYtaPtaiRalmklgee..lvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvd.eegkeve...eeeeggvLvikkpwPs 457
                 v  PL++G tt+++eg p  +pda+ +w+vi++y v  ++taPta+Ra+ +l  e  + + hdlssl+ +   Ge  +pe+ + + e +   ++p+vd wWqtetG  +     +  +  kpgs+ lP++G + +v++   g ++e    e+ +g  +i+ p+ +
  MMETSP1174-20130828|9876_1 243 VSXPLLMGCTTVMYEGKPVgTPDAGAYWDVIDRYSVGAMFTAPTALRAIRRLDPEidMARTHDLSSLKTVFVAGERADPETVSHFAERL---NVPVVDHWWQTETGWPMCGMQDA-EVGCKPGSCGLPVPGYDIRVMNgPAGGPIErleGESVEGPFAIRMPYVG 403
                 778***************658******************************9865226899************************9976...89***************999988.59*******************9777877774312233477888887765 PP

  == domain 3    score: 155.7 bits;  conditional E-value: 9.9e-49
   TIGR02188 456 PsmlrtiygdeerfvetYfkklkg.....lyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaege..ellgdvstledpsvve 624
                 P+++ t++g+++ +ve+Y++++++      + tGD    d+dGy+ ++GR+Ddv+nv+Ghrl+t  +e+a+ +h++vae+av+g+pd +kg++ v  +vl+ g+ee    + +e+++lvr+++gp+a+ +k  +v+ lPktRsGki+R ++r++aeg+  e l+   t+ed  +ve
  MMETSP1174-20130828|9876_1 447 PGVMTTLFGENDSYVEKYLEEFTDpqggtWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVGAEEGG--VVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMRSLAEGKegEDLKIPGTIEDARAVE 620
                 9*********************99899978889********************************************************************9999776..8*********************************************99545555557999988887 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0     1e-18   3.3e-16      70     193 ..      49     179 ..       9     188 .. 0.81
   2 !   29.4   0.0   1.5e-10   4.8e-08     325     408 ..     245     331 ..     235     341 .. 0.87
   3 !   38.0   0.0   3.8e-13   1.2e-10     482     630 ..     457     605 ..     437     624 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 1e-18
   TIGR01217  70 vvddskmlaar.ffpgarlnyaenll.rkkgs....edallyvdee.kesakvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsv 193
                  vdds ++    +fp+ r+n   n++ r+       ++a+ + ++    s  +++++l ++v+s aaal +lGv++Gd v+ y+p +pea++a+la+  +Ga+ s +   f  r +  r++   pk++++ 
  MMETSP1174-20130828|9876_1  49 AVDDSLAPHFYsWFPDGRINLCYNAVdRHVAGgrasQTAIAFHSNVgGRSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITA 179
                 466666665545*********99988344333455456666666655888999***************************************************************************986 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 1.5e-10
   TIGR01217 325 sglatGatlvlydGspl.vpatnvlfdlaeregitvlGtsakyvsavrkkg..lkparthdlsalrlvastGsplkpegfeyvyeei 408
                   l++G+t v+y+G p+  p++ + +d+++r  +  + t+   + a+r+ +  +  arthdls+l++v  +G   +pe+ ++  e +
  MMETSP1174-20130828|9876_1 245 XPLLMGCTTVMYEGKPVgTPDAGAYWDVIDRYSVGAMFTAPTALRAIRRLDpeIDMARTHDLSSLKTVFVAGERADPETVSHFAERL 331
                 4699************648*****************************86533899*****************99999988876665 PP

  == domain 3    score: 38.0 bits;  conditional E-value: 3.8e-13
   TIGR01217 482 ndedGskyrkayfdkypgvw.ahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigq.eqedgeervvlfvklasGatldealvkeikdairaglsprhvpskiievagiprtlsGkkvevavkdvvaGkpve 630
                 nd    ky + + d   g w + Gd   +   G + ++Gr+d  ln  G rl +  + +av + + v+e+ vig  +   g++ v l+v l  Ga+ +  +v+e+ d +r  + p     k + v+g+p+t sGk++   ++++ +Gk  e
  MMETSP1174-20130828|9876_1 457 NDSYVEKYLEEFTDPQGGTWfTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGApDALKGHVPVGLLV-LRVGAE-EGGVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMRSLAEGKEGE 605
                 777888999999999999994579**9**********************************************9834556777776655.677776.678899999999999999999999999********************9998644 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.2e-05      0.02       4     109 ..      68     179 ..      65     228 .. 0.72
   2 !   30.3   0.0   1.2e-10   3.8e-08     216     357 ..     237     388 ..     235     408 .. 0.76
   3 !   67.2   0.0     8e-22   2.5e-19     382     507 ..     473     597 ..     458     598 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.2e-05
   TIGR02262   4 naaedlldrnvvegrgdkl..afiddv....sslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvs 109
                 n + + +dr v+ gr  ++  af  +v    + +sy++l ++v+ +aaal +lGv + + v++ +    +   ++l   r G v  ++   +++ + a  l+d+  +vv+ +
  MMETSP1174-20130828|9876_1  68 NLCYNAVDRHVAGGRASQTaiAFHSNVggrsRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITA 179
                 66777789999999987751167766522225689*************************9999977777777777777777777777777777777777777777777765 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.2e-10
   TIGR02262 216 yGlGnalifplsvGatavlmaerp..tpd..avfdrlrrvkptifygvptlyaamla.dpel...kaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddv..kyGtsGkpvpGyrlrlvddggedvadgevG 357
                 +G   ++  pl +G t+v++  +p  tpd  a +d + r+    ++++pt   a+   dpe+   +++d ++l+ +  aGe    e   ++ +r+ v ++d    te +  +   +  +v  k G++G pvpGy +r+++  ++   +   G
  MMETSP1174-20130828|9876_1 237 WGTASSVSXPLLMGCTTVMYEGKPvgTPDagAYWDVIDRYSVGAMFTAPTALRAIRRlDPEIdmaRTHDLSSLKTVFVAGERADPETVSHFAERLNVPVVDHWWQTETGWPMCGMQDAEVgcKPGSCGLPVPGYDIRVMNGPAGGPIERLEG 388
                 567778899************9986656633689****************99887532666511144557899********776666679******************9877665555543389**************99655444444444 PP

  == domain 3    score: 67.2 bits;  conditional E-value: 8e-22
   TIGR02262 382 eGewtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfklre 507
                  G w  +Gd    ++dG+    Grtdd+l v+G  +s   +e+a+ ah++v e av+ga d  +   p   +vlr ga+ +++  +e+ + v+++++p    r   +v  lpkt +Gki r  +r+
  MMETSP1174-20130828|9876_1 473 GGTWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVGAEEGGV-VQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMRS 597
                 589***********************************************************9999************98885.5667799******************************99986 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.1e-14   3.6e-12      38     131 ..      85     178 ..      60     184 .. 0.85
   2 !   11.3   0.0   7.1e-05     0.022     308     380 ..     305     377 ..     292     386 .. 0.92
   3 !   46.4   0.0   1.6e-15   4.9e-13     414     534 ..     470     593 ..     450     597 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 1.1e-14
   TIGR03208  38 kpalvalrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvv 131
                 ++a++     +g  r +sy++l  +v+  a  l++lgvg gd+v + +p   e    +lac rigav   ++  f  rel+  l+ a  kv++ 
  MMETSP1174-20130828|9876_1  85 QTAIAFHSNVGGRSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVIT 178
                 33444444556788999**************************************************************************996 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.1e-05
   TIGR03208 308 pvsslktflcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvida 380
                  +sslkt   ag    +  v +  e l + +v  w  te+g       d +      + glp+pg +++v+++
  MMETSP1174-20130828|9876_1 305 DLSSLKTVFVAGERADPETVSHFAERLNVPVVDHWWQTETGWPMCGMQDAEVGCKPGSCGLPVPGYDIRVMNG 377
                 579**************************************99999999988999999************986 PP

  == domain 3    score: 46.4 bits;  conditional E-value: 1.6e-15
   TIGR03208 414 daeg..wfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlktgasld..faalveflkaqkvalqyiperlvvrdalpatpagkiqkf 534
                 d +g  wf tgd  f+d +gy+ + gr+ dv+   g  +    +e+ +  hp+va+ a+++ pd   g     ++vl+ ga       ++++ l +++v       + v++  lp+t +gki + 
  MMETSP1174-20130828|9876_1 470 DPQGgtWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVGAEEGgvVQEVID-LVRERVGPVASFRKAVIVTGLPKTRSGKILRN 593
                 544444**************************************************************************865311344444.667889988888999999**********9765 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     2e-10   6.2e-08       1      83 [.     102     183 ..     102     222 .. 0.85
   2 !   23.4   0.0   1.6e-08   5.1e-06     178     308 ..     242     376 ..     238     391 .. 0.83
   3 !   41.6   0.0   4.5e-14   1.4e-11     341     409 .]     461     528 ..     448     528 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2e-10
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeela 83 
                 +Y++L +r+++ A+aL +  gv++gd V+++++  +e++ a+la+ + Ga++ ++     ++ la  l+da++k+++t +   
  MMETSP1174-20130828|9876_1 102 SYQDLLKRVSSCAAALTN-LGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITATCGL 183
                 8****************7.56********************************************************986544 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.6e-08
   TIGR01733 178 eiflallaGatlvvvpeeeek.deaellaallaerkvtvlsltpsllellaeea......see.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeesee.epvpiGrplanvrlyvld 308
                 ++  +ll G t+v+++ +    ++a  + +++++++v ++ + p+ l+++   +      +++ l+sl++v+++Ge +++e+v  +++r + v ++ ++  TEt   ++    +++  +   +p + G p++++++ v++
  MMETSP1174-20130828|9876_1 242 SVSXPLLMGCTTVMYEGKPVGtPDAGAYWDVIDRYSVGAMFTAPTALRAIRRLDpeidmaRTHdLSSLKTVFVAGERADPETVSHFAERLN-VPVVDHWWQTETGWPMCGM--QDA--EVGcKPGSCGLPVPGYDIRVMN 376
                 56789****99999999999999999999*******************999998777765333355*********************9996.9***********8766432..222..2233577899999999998887 PP

  == domain 3    score: 41.6 bits;  conditional E-value: 4.5e-14
   TIGR01733 341 aerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  e+++e+ f++++g +++ TGD + +++dG ++ +GR+Dd + + G+R+  g  e+a++++p+v+e++v
  MMETSP1174-20130828|9876_1 461 VEKYLEE-FTDPQGGTWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAV 528
                 5677775.5566788****************************************************98 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.8e-12   8.9e-10      22     133 ..      97     208 ..      76     233 .. 0.86
   2 ?    0.6   0.0       0.1        33     322     377 ..     353     408 ..     346     420 .. 0.74
   3 !   43.1   0.0   1.4e-14   4.3e-12     400     515 ..     479     596 ..     466     598 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2.8e-12
   TIGR03098  22 kdrtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepeka 133
                 ++r+++y+ L ++v ++a++l+ lg+ +g+ v iy++   e++ a++a+ ++g+v+  +     ++ +a  l+D++ k+++t++  l+  +++ + ++ l++ i++  +++ 
  MMETSP1174-20130828|9876_1  97 RSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITATCGLEGETKVVPYLPLLEEAITLTREDRR 208
                 5679************************************************************************************999999999988888877666544 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.1
   TIGR03098 322 PeevdrrPdsiGkaipnaevlvlredGsecapeeeGelvhrGalvakGYWndpekt 377
                  +ev+ +P+s G  +p  ++ v++          eGe v+    + + Y  +p  t
  MMETSP1174-20130828|9876_1 353 DAEVGCKPGSCGLPVPGYDIRVMNGPAGGPIERLEGESVEGPFAIRMPYVGQPPST 408
                 5799*******************976655556667887765555666666666555 PP

  == domain 3    score: 43.1 bits;  conditional E-value: 1.4e-14
   TIGR03098 400 sGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaiv.lvvv.esdkeeldkkellkelraelPaymvPakielrealprnanGkiDrkala 515
                  GD +  De+G+++++gR d+++  +G+R s   +ee++ a + vae++v+g pd   G+  v l+v     +e    +e+   +r+++      +k  ++  lp++ +Gki r++++
  MMETSP1174-20130828|9876_1 479 TGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVgLLVLrVGAEEGGVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMR 596
                 79*********************************************************98551444423334444578889999999988888889999999*********998876 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   2.9e-05    0.0092      37     126 ..      91     180 ..      73     189 .. 0.84
   2 !   15.1   0.0   3.9e-06    0.0012     294     379 ..     285     375 ..     267     402 .. 0.80
   3 !   49.1   0.0     2e-16   6.2e-14     420     541 .]     474     596 ..     437     596 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.9e-05
   TIGR03205  37 rpalefrdraitytelealaetaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsd 126
                  + +  r r i+y +l   + ++aaal + g+g+   v +y+  +p+    ++ + + ga    +      r l+ +l d+  +++it+ 
  MMETSP1174-20130828|9876_1  91 HSNVGGRSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITAT 180
                 44556699***************************************99999999999986555555556789999********999975 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.9e-06
   TIGR03205 294 ptmwialan.dpsle...krdlsslatigsggaplpvevaklferkvglklksgwgmtetcspgtgh.plegpdkpgsiglmlpgieldvv 379
                 pt   a+   dp+++     dlssl t+   g     e    f  + ++ +   w  tet  p  g    e   kpgs gl +pg ++ v+
  MMETSP1174-20130828|9876_1 285 PTALRAIRRlDPEIDmarTHDLSSLKTVFVAGERADPETVSHFAERLNVPVVDHWWQTETGWPMCGMqDAEVGCKPGSCGLPVPGYDIRVM 375
                 55555554326776632257******9998888877777777777899999************98851567889***********999886 PP

  == domain 3    score: 49.1 bits;  conditional E-value: 2e-16
   TIGR03205 420 gdrfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklregakpf.sldelraflagklgkhelpvavelvdelprtsvgklsrhelr 541
                 g  f tgd g++d+dgy  ++ r  d++   g  +    +e+a+  +p+v e  vig pd  +g     ++ lr ga+    ++e+ ++++ ++g      +  +v  lp+t  gk+ r  +r
  MMETSP1174-20130828|9876_1 474 GTWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVGAEEGgVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRNVMR 596
                 66799************************************************************************876167999*********999999999************9997665 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.7e-06   0.00085       1      82 [.     102     183 ..     102     203 .. 0.93
   2 !    5.4   0.0    0.0047       1.5     219     292 ..     302     376 ..     256     387 .. 0.85
   3 !   51.6   0.0   4.4e-17   1.4e-14     316     440 ..     463     593 ..     456     595 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-06
   TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslle 82 
                 ++++l k+++ +A al+  +v +gd+v ++++   e + ++la+ ++g++  ++   +  +el+  l++ + ++++t+++  
  MMETSP1174-20130828|9876_1 102 SYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITATCGL 183
                 69**************************************************************************998854 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0047
   TIGR01923 219 sssepeslrkiLLGGsai.paplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikv 292
                 +++ + sl+++   G+ + p ++ + a + ++p+   +  TEt   ++ ++      k++s G p+++ +i++ +
  MMETSP1174-20130828|9876_1 302 RTHDLSSLKTVFVAGERAdPETVSHFAERLNVPVVDHWWQTETGWPMCGMQDAEVGCKPGSCGLPVPGYDIRVMN 376
                 4557899****9999987477888889999**********************99999***************954 PP

  == domain 3    score: 51.6 bits;  conditional E-value: 4.4e-17
   TIGR01923 316 gelteaveeqG..wlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses....eiskakltaylkeklaKyKvPiafekldelpkeasgKilRn 440
                 + l+e ++ qG  w+ tgD g +d++g++ v +R dd++   G  +    +E+++  +p v+e++v++++D+  G+vPv +++++         +++++ ++e+++      + + +  lpk+ sgKilRn
  MMETSP1174-20130828|9876_1 463 KYLEEFTDPQGgtWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVgaeeGGVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKILRN 593
                 4566667777667******************************************************************8888776433244567899999***999999999999999**********98 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.1e-08   6.7e-06      45     126 ..      97     178 ..      81     204 .. 0.89
   2 ?   -3.4   0.0       1.4   4.5e+02     292     309 ..     301     318 ..     263     329 .. 0.72
   3 !   36.4   0.0   1.3e-12   3.9e-10     408     526 .]     476     596 ..     463     596 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.1e-08
   TIGR02275  45 gerkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaallii 126
                   r +sy++l +r+++ aa lt+lG+++gd +v+ +p + e  ++++a  ++G++  + +    + el    + + ++++i+
  MMETSP1174-20130828|9876_1  97 RSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVIT 178
                 45778************************************************99988888888888888888888888776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.4
   TIGR02275 292 ksradlsslkllqvGGak 309
                  +++dlsslk + v G +
  MMETSP1174-20130828|9876_1 301 ARTHDLSSLKTVFVAGER 318
                 567889999999988866 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 1.3e-12
   TIGR02275 408 fyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkdedlkavqlrr...flrea.G.laeyklPdrvelidslPltavGkidkkalr 526
                 +++tGd   ++++Gy+ v Gr+ d +n  G ++++  +e+ + +hp+v ++a++  +d l G     ++v++  + +   +++    +re+ G +a ++   +  ++  lP+t  Gki ++ +r
  MMETSP1174-20130828|9876_1 476 WFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVPVGLLVLRVGAEEGGVVQEvidLVRERvGpVASFR---KAVIVTGLPKTRSGKILRNVMR 596
                 789***************************************************************999998766555444441104444322366665...7789999999999999888776 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.5e-06    0.0024      24     105 ..      99     180 ..      84     214 .. 0.84
   2 !   20.6   0.0   9.3e-08   2.9e-05     363     432 ..     463     532 ..     455     596 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.5e-06
   TIGR01734  24 qeltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvieva 105
                    +y++L + +++ aaal++  + e + ++++  + +e l+a+l+ ++ G  +  v    ++  ++   + a+p++vi+++
  MMETSP1174-20130828|9876_1  99 RMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITAT 180
                 5689***********************************************9998888888888888888888888888654 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 9.3e-08
   TIGR01734 363 kteeaffeaegkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPky 432
                 k  e f + +g + + tGDag+i++dg++ + Gr+D  + + G+r+    +e+ +     + e++v+   
  MMETSP1174-20130828|9876_1 463 KYLEEFTDPQGGTWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAP 532
                 555678888888999**************************************************99654 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.1e-05    0.0036     266     349 ..      96     179 ..      83     193 .. 0.90
   2 !   18.2   0.0   2.1e-07   6.6e-05     678     742 ..     475     539 ..     451     568 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
   TIGR03443 266 sktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivl 349
                  ++r ++y+++ +     a +l + G+ +gd+v++y     + + a+l   + Ga+ sv+   +     ++ l+ a P+ +i+ 
  MMETSP1174-20130828|9876_1  96 GRSRMISYQDLLKRVSSCAAALTNLGVGEGDLVVIYMPMVPEALEAMLACNRIGAVHSVVFGGFASRELAVRLDDASPKVVITA 179
                 57899******9999999************************************************99***********88764 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.1e-07
   TIGR03443 678 rlyrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvrenvtlvrrdkdeekt 742
                   + tGd G    dG v   Gr+dd + + G r+  G ++  +s hP v e   +   d  + ++
  MMETSP1174-20130828|9876_1 475 TWFTTGDAGFIDEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHV 539
                 46899********************************************9987666666555555 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   3.5e+02     309     344 ..     147     182 ..     144     188 .. 0.83
   2 !   30.9   0.1   7.5e-11   2.4e-08     286     385 ..     486     590 ..     479     591 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02372 309 spghvkdvLeaepavealavrldGerLkafivvaed 344
                 + g+v++v+    a ++lavrld    k +i++  +
  MMETSP1174-20130828|9876_1 147 RIGAVHSVVFGGFASRELAVRLDDASPKVVITATCG 182
                 678999999999999********9999999987655 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 7.5e-11
   TIGR02372 286 ddervfvieGrldeilqvgGvnvspghvkdvLeaepavealavrldGerLkafi.....vvaedadeeeleaeLrataaehLpaparPddlrfgteLPrtaaGkl 385
                 d+++   ++Gr d++l v+G   s g  ++ + a+p+v+++av    + Lk  +     v   +a+e+ + +e+   + e +  +a   +  + t LP+t+ Gk+
  MMETSP1174-20130828|9876_1 486 DEDGYVHVMGRTDDVLNVAGHRLSTGSLEEAVSAHPSVAECAVIGAPDALKGHVpvgllVLRVGAEEGGVVQEVIDLVRERVGPVASFRKAVIVTGLPKTRSGKI 590
                 466777899***********************************9999999865222225669****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.74u 0.15s 00:00:00.89 Elapsed: 00:00:00.91
# Mc/sec: 925.37
//
Query:       MMETSP1174-20130828|9882_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|9885_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.51    7.2  11.8       0.65    6.9   8.2    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        1.7    6.2  12.7        1.6    6.2   8.3    1.4  1  TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.2   0.00032      0.65       4      75 ..      31     105 ..      27     112 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00032
   TIGR01554   4 lreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea....aaeeeakeaasgeagkeeeee 75 
                 l+e++ + ++++k+++++   +e+++ +++ +a ++++++le++++++e +    ++e++a+e + + a+++e+e 
  MMETSP1174-20130828|9885_1  31 LEEQRIAFEASIKEMQTEALTKEEHA-REAMQAYQEQVAELEEKLNQAEGKvgtvTEEQAAREGNLRSAAQAEKER 105
                 56666777777776666655544444.44556699**************999665444444444444444444443 PP

>> TIGR03321  alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.3    0.0008       1.6      38     101 ..      39     105 ..      29     113 .] 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0008
   TIGR03321  38 EkkiaseladAdekkkeAeqereeyeekneeldq...qreellekakeeveaerqrlldeareeade 101
                 E+ i ++ ++A +k++ A+++ + y+e+ +el++   q+e  +++++ee  a++ +l  +a++e ++
  MMETSP1174-20130828|9885_1  39 EASIKEMQTEALTKEEHAREAMQAYQEQVAELEEklnQAEGKVGTVTEEQAAREGNLRSAAQAEKER 105
                 6677788899***********************833357779999****999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       466  (0.113603); expected 82.0 (0.02)
Passed bias filter:                      232  (0.0565578); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 438.67
//
Query:       MMETSP1174-20130828|9881_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   26.5  35.5    3.7e-07   26.1  24.6    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    6.4e-05   18.6  40.2    8.2e-05   18.3  27.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.4    5.6  30.4       0.26    8.0  12.7    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        2.4    4.3  32.1      0.035   10.4   4.5    2.9  3  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
        7.7    2.9  24.9       0.19    8.2  12.0    1.9  2  TIGR02231 TIGR02231: conserved hypothetical protein
        7.9    1.8  35.0       0.68    5.4  15.9    1.7  1  TIGR02680 TIGR02680: TIGR02680 family protein
        9.1    4.4  11.2        1.1    7.4   0.9    2.9  3  TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1  24.6   6.3e-10   3.7e-07     675     884 ..      38     243 ..       3     274 .. 0.43

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.3e-10
   TIGR02168 675 lerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeele..eleeeleellkek 884
                 ++ k+ +++ e ei+e e +i+e++k+  ++e+e  + +ee + lr+++   +  ++e  ++++++ek +++ e++ + l+ ++++l++ ++e++e++e +++++ke ++e++++++++e l e++++lr++ +e  ++ + e  ++++    + + +++++ ++ ++l+ l+++ + +e++ +++e+e++e++++l   + ++ +e+  +++
  MMETSP1174-20130828|9881_1  38 QKAKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIARWKEECKILRDAK---NAGIREGIERADKAEKGIQRSEAECKLLRGTNARLDQAMREQDEKVERLQKNIKELNAERNKQRKKFEGLDEKMTDLRKKCEESDEACNvEKTRRIE----AEKLSQQRKVECGESLRALQDERAINEARYTNIESELAECKKKLGcaKEQKSFEAERADR 243
                 2222222233333333333333333333333333333332222222222...2244444444444555555555555555555555555555555555555555555555555555555555555555555555544444422222222....122334444455555555555555555555555555555544432102222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  27.9   1.4e-07   8.2e-05     230     452 ..      27     242 ..       2     288 .. 0.46

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-07
   TIGR02169 230 lkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeik 452
                  + le+l k+ +k +++l ++e e+++ e ei+e +k+  ++e++++  +++ + l + + + ++e +e       k+e+ i+ +e e + +  ++a++++ +++++e++e l+++i+e ++er+k  ++++ l e++ +lr++ ee d++ +  + +  e+++  ++ k e  e+    + l++e    e++  +++ el++ ++k+   +e++   ae+  
  MMETSP1174-20130828|9881_1  27 FEGLEELYKKYQKAKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIARWKEECKILRDAKNAGIREGIERA----DKAEKGIQRSEAECKLLRGTNARLDQAMREQDEKVERLQKNIKELNAERNKQRKKFEGLDEKMTDLRKKCEESDEACNVEKTRRIEAEKLSQQRKVECGESL---RALQDERAINEARYTNIESELAECKKKLGCAKEQKSFEAERAD 242
                 33344444444444444444444444444444444444444444444444444444444444444444432....233334444444444444444444445555555555555555555555555555555555555555555555444444333333333333333333333322...3344444444444444444444444433333333322222222 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   8.6       0.2   1.2e+02     132     231 ..      32     131 ..       5     137 .. 0.61
   2 ?    8.0  12.7   0.00044      0.26      98     245 ..      95     240 ..      82     260 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.2
   TIGR01843 132 slfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelL.elereraelqgelaeleaeleklkaeldeleek 231
                 +l++ + ++ ++ l + e +ik++e+e++++++++ a+++++   +ee ++lr  k+ g+ +  e   ++e+ ++  ++e + l+++ + l ++++e +ek
  MMETSP1174-20130828|9881_1  32 ELYK-KYQKAKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIARWKEECKILRDAKNAGIREGIERAdKAEKGIQRSEAECKLLRGTNARLDQAMREQDEK 131
                 3443.344556667777888888888888888888888888888888888888888877755443320223333333333333333333333333333333 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00044
   TIGR01843  98 arlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqlelisee..lealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevse 245
                 +r++   ++++  e++  ll+     ++ ++++ ++ +++ + l++++++l+a++++++++ egl+++++ lr++ e  +e   +e +r +++++l s+++  e  +++++lq e a++ea+ +++++el+e ++kl  ++++   e+++
  MMETSP1174-20130828|9881_1  95 ERADKAEKGIQRSEAECKLLR---GTNARLDQAMREQDEKVERLQKNIKELNAERNKQRKKFEGLDEKMTDLRKKCEESDEAcnVEKTRRIEAEKL-SQQRKVECGESLRALQDERAINEARYTNIESELAECKKKLGCAKEQKSFEAER 240
                 444433344444444444444...677778888888889999999********************************9999711456788888887.56677899999****************************98888776665554 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.5     6e-05     0.035     397     493 ..       4     105 ..       1     115 [. 0.84
   2 ?    2.3   6.7     0.016       9.4     198     252 ..     126     179 ..     112     194 .. 0.67
   3 ?    0.0   3.4      0.08        47     197     268 ..     185     256 ..     176     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6e-05
   TIGR03185 397 lkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkel...kektkqkedaeel..ervikladkvkktle 493
                 +k+ ++++e l+el kk  + ++ e ++el ++ ++a+e++ k e+ei+ek+ +++e++++  ++ +e+   ke  k+  da+++  ++ i+ adk++k ++
  MMETSP1174-20130828|9881_1   4 SKQGKKIAEVLKELGKKYGNGENFEGLEELYKKYQKAKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIarwKEECKILRDAKNAgiREGIERADKAEKGIQ 105
                 566789999************************************************888888888888788777777777777522678888888887665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.016
   TIGR03185 198 rkkeeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekk 252
                 r+++e+ ++++++i++l+ae+++q +k e l +++  lrk+ ee+++  + +ek+
  MMETSP1174-20130828|9881_1 126 REQDEKVERLQKNIKELNAERNKQRKKFEGLDEKMTDLRKKCEESDEACN-VEKT 179
                 44555566678888888888888888888888888888888888776553.3333 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.08
   TIGR03185 197 rrkkeeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereele 268
                 ++ +++ + e  + ++al+ e++  e +++ ++ e+a+ +k+l  a+++++   +++ +e  +++e+ +++e
  MMETSP1174-20130828|9881_1 185 EKLSQQRKVECGESLRALQDERAINEARYTNIESELAECKKKLGCAKEQKSFEAERADREKVDMMEKTARVE 256
                 4556666667889999***************************99999888777777777777777766665 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  12.0   0.00032      0.19      62     173 ..      40     152 ..      28     173 .. 0.86
   2 ?   -2.4   2.0      0.53   3.1e+02      88     152 ..     175     226 ..     149     260 .. 0.33

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00032
   TIGR02231  62 reltseadseriaelrkkireleaeledledradalkklkkfledire.kltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelrallte 173
                 +++  ++++ +i+e + +i+e +++   +e+++   k+  k+l d+++ ++ e i+ + ++e+ ++  ++  ++ +   ++l+++ re ++k + l+k ++el++e+++ +++
  MMETSP1174-20130828|9881_1  40 AKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIARWKEECKILRDAKNaGIREGIERADKAEKGIQRSEAECKLLRGTNARLDQAMREQDEKVERLQKNIKELNAERNKQRKK 152
                 45667889999**************************999****9986267777777**************************************************998873 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.53
   TIGR02231  88 edledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveak 152
                 +  + r+  ++kl        ++ + +  +      +l++l++  + +e+ + ++++e+ e+++k
  MMETSP1174-20130828|9881_1 175 NVEKTRRIEAEKLS-------QQRKVECGE------SLRALQDERAINEARYTNIESELAECKKK 226
                 22222222111111.......111111111......22222222222222222222222222222 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  15.9    0.0012      0.68     267     432 ..      86     248 ..      80     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0012
   TIGR02680 267 ratelrsAqkqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraaree.lareAeraglseahtaeplaalaaqelqelgalaldarrqda 432
                 + + +r+  +++d++++  ++++ e + +r ++++ld+++++ +++ e+l++++++L+++   ++ k++e ++++ ++l+k+ +e  +a+   ++r  e+ +    +++r  e+ e+lra ++e + +eA+   +++   + +  +  a+e++++ a + d  + d+
  MMETSP1174-20130828|9881_1  86 KNAGIREGIERADKAEKGIQRSEAECKLLRGTNARLDQAMREQDEKVERLQKNIKELNAER-NKQRKKFEGLDEKMTDLRKKCEESDEACNVEKTRRIEAEKL---SQQRKVECGESLRALQDErAINEARYTNIESELAECKKKLGCAKEQKSFEAERADREKVDM 248
                 5567889999***********************************************9876.57789*******************99997655555555444...5677778888888887762558899999988877777777777777777655555555544 PP

>> TIGR03930  WXG100_ESAT6: WXG100 family type VII secretion target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.8     0.059        35      50      89 ..      34      73 ..      26      74 .. 0.84
   2 ?    7.4   0.9    0.0018       1.1      48      87 ..     120     159 ..     115     162 .. 0.91
   3 ?   -3.1   0.0       3.4     2e+03      50      74 ..     203     227 ..     196     233 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.059
   TIGR03930 50 daefaewkpaaerlneaLqeiseelrqaakkfeqadeeaa 89
                ++ +++ k+ +++ + + +e ++e+++a+k+ ++a+ee+a
  MMETSP1174-20130828|9881_1 34 YKKYQKAKEDLRKKEMEIKEKETEIKEANKRTMAAEEEIA 73
                5678888999999999999999999999999999999987 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0018
   TIGR03930  48 afdaefaewkpaaerlneaLqeiseelrqaakkfeqadee 87 
                   d++++e ++++erl+++ +e++ e ++  kkfe  de+
  MMETSP1174-20130828|9881_1 120 RLDQAMREQDEKVERLQKNIKELNAERNKQRKKFEGLDEK 159
                 56899******************************99997 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.4
   TIGR03930  50 daefaewkpaaerlneaLqeiseel 74 
                 ++e a  ++ +++++ +L+e +++l
  MMETSP1174-20130828|9881_1 203 QDERAINEARYTNIESELAECKKKL 227
                 5555555566677777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       504  (0.122867); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.19s 00:00:00.84 Elapsed: 00:00:00.74
# Mc/sec: 713.45
//
Query:       MMETSP1174-20130828|9890_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 655.06
//
Query:       MMETSP1174-20130828|9884_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.0   0.0      0.049   11.4   0.0    1.2  1  TIGR02571 ComEB: ComE operon protein 2


Domain annotation for each model (and alignments):
>> TIGR02571  ComEB: ComE operon protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05     0.049      31     113 ..     121     206 ..     115     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
   TIGR02571  31 ivrdkriiaggyngsvagevhcidegcyvvdghcvrtihaemnallqcakfgvsteeaeiyvthfpc.....lqctksiiqagikkvy 113
                 +v++  i+ g  +     + h + +  y  d+  +   h++   +l   + gv t++++ y+t  pc      + +   + +gik+v+
  MMETSP1174-20130828|9884_1 121 VVKNASIVGGDVEHRTGKGSHSAMDSRYFDDEALL-LNHSQ-AGILSMVNGGVDTNGSQFYITTAPCphldgYSVAFGRVTSGIKAVH 206
                 78888888888888888899999999998776554.45654.67999********************331111223334566777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1046.81
//
Query:       MMETSP1174-20130828|9893_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 326.31
//
Query:       MMETSP1174-20130828|9894_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|9895_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 288.29
//
Query:       MMETSP1174-20130828|9898_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 312.20
//
Query:       MMETSP1174-20130828|9899_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|9907_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.93
# Mc/sec: 99.35
//
Query:       MMETSP1174-20130828|9908_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 509.10
//
Query:       MMETSP1174-20130828|9909_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.40
# Mc/sec: 402.57
//
Query:       MMETSP1174-20130828|9905_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 768.37
//
Query:       MMETSP1174-20130828|9911_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 1046.65
//
Query:       MMETSP1174-20130828|9919_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|9918_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-12   43.9   0.0    6.4e-12   43.4   0.0    1.2  1  TIGR02181 GRX_bact: glutaredoxin 3
    6.4e-12   43.1   0.0    8.5e-12   42.7   0.0    1.1  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    8.6e-12   43.0   0.0    1.9e-11   41.9   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin
    6.5e-08   30.3   0.0    8.4e-08   30.0   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    2.3e-07   29.1   0.0    3.1e-07   28.7   0.0    1.2  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    3.4e-05   22.1   0.0    4.6e-05   21.6   0.0    1.2  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    4.2e-05   21.1   0.0    5.6e-05   20.7   0.0    1.1  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
    6.4e-05   20.8   0.0    8.2e-05   20.5   0.0    1.3  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    8.5e-05   19.8   0.0    0.00011   19.4   0.0    1.1  1  TIGR02740 TraF-like: TraF-like protein
     0.0033   15.5   0.0     0.0053   14.8   0.0    1.5  2  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
     0.0051   14.8   0.1      0.072   11.1   0.1    2.1  1  TIGR02183 GRXA: glutaredoxin, GrxA family


Domain annotation for each model (and alignments):
>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.7e-14   6.4e-12       1      66 [.      16      77 ..      16      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.7e-14
   TIGR02181  1 vviYtkksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcdd 66
                vv + ++sCpyc++Ak+ L++ g+ef+ + +++    r  +i++++ +++ P ++i+ + +GGc+d
  MMETSP1174-20130828|9918_1 16 VVFFDNSSCPYCHQAKSALANAGIEFKIVPISE---YRGALIAKTS-KSSAPSVWIKGTYIGGCND 77
                6778899********************999986...5677888885.99***************98 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   2.3e-14   8.5e-12       8      72 ..      14      76 ..       9      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.3e-14
   TIGR02190  8 esvsvftkpGCPfCakakavLkekGldfeeivLgkdirtrslravtGattvPqvfinGkliGgsd 72
                  v+ f    CP+C +ak +L++ G++f+ +++ +  r+ +l a t + ++P v+i+G +iGg +
  MMETSP1174-20130828|9918_1 14 ADVVFFDNSSCPYCHQAKSALANAGIEFKIVPISE-YRG-ALIAKTSKSSAPSVWIKGTYIGGCN 76
                57999************************999975.565.5678999****************87 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     5e-14   1.9e-11       1      70 [.      16      77 ..      16      81 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 5e-14
   TIGR02180  1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsdd 70
                Vv f  s+CpYc++ak++L++  ++  +++v ++++      + +L   t +++ P+++i+g+ iGG++d
  MMETSP1174-20130828|9918_1 16 VVFFDNSSCPYCHQAKSALANAGIE--FKIVPISEY------RGALIAKTSKSSAPSVWIKGTYIGGCND 77
                899*****************99899..899988655......999***********************98 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.3e-10   8.4e-08       3      77 ..       9      77 ..       7      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.3e-10
   TIGR02189  3 rlvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGglee 77
                +++s   vv f +ssC  +h +k  l + G++  +v +       e+  al++ +sk+++P v++ G+++Gg ++
  MMETSP1174-20130828|9918_1  9 EVISSADVVFFDNSSCPYCHQAKSALANAGIEFKIVPIS------EYRGALIAKTSKSSAPSVWIKGTYIGGCND 77
                5789999*****************************999......4567777778899**************985 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   8.4e-10   3.1e-07       2      63 ..      16      74 ..      15      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 8.4e-10
   TIGR02196  2 vkvYttpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvG 63
                v  + + +Cp+C++ak +L ++gi+f+ + + +    +  l+ k+ + s P + i+++ + G
  MMETSP1174-20130828|9918_1 16 VVFFDNSSCPYCHQAKSALANAGIEFKIVPISE---YRGALIAKTSKSSAPSVWIKGTYIGG 74
                55667889*******************999975...556688899999*****999987766 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.2e-07   4.6e-05       5      38 ..      19      52 ..      15      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.2e-07
   TIGR02200  5 YatswCgyCaslkrtLdkdgaeYevvdiekdeea 38
                +  s C+yC+++k  L + g+e+++v i +  +a
  MMETSP1174-20130828|9918_1 19 FDNSSCPYCHQAKSALANAGIEFKIVPISEYRGA 52
                56789*********************99986665 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   5.6e-05      52      74 ..      14      36 ..       7      48 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.5e-07
   TIGR02738 52 yklvlfyqstCpyChqfapvLkq 74
                  +v+f +s+CpyChq+   L +
  MMETSP1174-20130828|9918_1 14 ADVVFFDNSSCPYCHQAKSALAN 36
                579**************998865 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.2e-07   8.2e-05      24      82 ..      21      76 ..       4     100 .] 0.77

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.2e-07
   TIGR00365 24 lpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcd 82
                  +C + ++a ++l ++g+ef+ v +    e r  l   +     P +++kg ++GGc+
  MMETSP1174-20130828|9918_1 21 NSSCPYCHQAKSALANAGIEFKIVPIS---EYRGALIAKTSKSSAPSVWIKGTYIGGCN 76
                5689999***************99985...567777777778899*************7 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.9e-07   0.00011     162     206 ..       5      47 ..       2      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.9e-07
   TIGR02740 162 evlkelakkaglffffksdCklCeqqapilkaleerygievlpvS 206
                 ++l e+ ++a + ff +s+C++C+q++++l++      ++++p+S
  MMETSP1174-20130828|9918_1   5 SALLEVISSADVVFFDNSSCPYCHQAKSALANA--GIEFKIVPIS 47 
                 5677888899999****************9874..4567777777 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05    0.0053       3      35 ..      18      50 ..      16      76 .. 0.84
   2 ?   -3.0   0.0       5.2   1.9e+03      55      65 ..      77      87 ..      75      89 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.4e-05
   TIGR02194  3 vysknnCvqCkatkkaleeqniafeeinideqp 35
                 +    C  C+ +k al + +i+f+++ i+e  
  MMETSP1174-20130828|9918_1 18 FFDNSSCPYCHQAKSALANAGIEFKIVPISEYR 50
                577789**********************99865 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.2
   TIGR02194 55 egeeslsGFrP 65
                +g+  + G rP
  MMETSP1174-20130828|9918_1 77 DGTLPWHGVRP 87
                57778999999 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00019     0.072       2      72 ..      16      76 ..      15      80 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
   TIGR02183  2 vvifGrpgcpycvrakqlaeklakeladfefryvdihaeGiskadlektvGkpvetvpqifvdekavGGct 72
                vv f   +cpyc +ak          a  ef+ v i      +  l  +  k   + p +++    +GGc 
  MMETSP1174-20130828|9918_1 16 VVFFDNSSCPYCHQAKSA-----LANAGIEFKIVPISEY---RGALIAKTSK--SSAPSVWIKGTYIGGCN 76
                789999********9863.....2345566666655421...2223222233..34566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 321.92
//
Query:       MMETSP1174-20130828|9916_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1127.91
//
Query:       MMETSP1174-20130828|9923_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1174-20130828|9926_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 182.27
//
Query:       MMETSP1174-20130828|9922_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.91
# Mc/sec: 453.98
//
Query:       MMETSP1174-20130828|9934_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-05   19.2   0.3    0.00012   18.4   0.0    1.4  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
     0.0011   15.1   0.0     0.0015   14.6   0.0    1.1  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.6e-08   0.00012     708     817 ..       7     137 ..       2     157 .. 0.72
   2 ?   -3.9   0.1      0.32   6.5e+02     402     450 ..     207     255 ..     205     274 .. 0.63

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.6e-08
   TIGR03346 708 ntviiltsnlgseaiqelaeeee...aeevkeavm............ealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaer.......klelelsdaaldllaeagydPvyGarPlkra 817
                  +v iltsn+++e ++++ ++++   +++++e+v+              ++  +rPe   r+d+ + f++ + +e  +i+e  le+  + ++er       +l+l+ ++aa+++la+  y  + G rP+  a
  MMETSP1174-20130828|9934_1   7 RAVFILTSNFAAEELVDDVTDDDeenTQAARERVVfdglrswqrdsqGRVNPFIRPEARGRVDKFIFFHPYSVKERYDIIERYLEKTVTLIEERfssnnqwSLTLTWTQAAVQFLAN-EYSSTEGLRPVLNA 137
                 6899*********99988777664445555665532222211111113455568*******************99999999888876555555433333335788889999999987.59999999998665 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.32
   TIGR03346 402 skPeeldeldrriiqlkierealkkekdeaskerleklekelaeleees 450
                 sk  e d ++ ++   ++e ++l + kd+ s    +  ++ +a++e+e+
  MMETSP1174-20130828|9934_1 207 SKGRESDYVREKVKTAQVEPTTLVRKKDHVSYVGDHVSDDAVARREREY 255
                 5566677777777777888888888888777666555555555555554 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.5e-07    0.0015     615     704 ..      39     135 ..      25     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.5e-07
   TIGR02639 615 kiGfaeekse.eksekaikklfsPefrnrldaiikfedlse....evlekivkkeleelekkLaekk...veleleddaikylaekgydeefGarelk 704
                  + f + +s    s+  ++ +  Pe r r+d+ i f++ s     +++e+ ++k+++ +e+++++ +   ++l+ ++ a+++la++ y++  G r++ 
  MMETSP1174-20130828|9934_1  39 RVVFDGLRSWqRDSQGRVNPFIRPEARGRVDKFIFFHPYSVkeryDIIERYLEKTVTLIEERFSSNNqwsLTLTWTQAAVQFLANE-YSSTEGLRPVL 135
                 55555544443568899********************9875112257788888999999999876533236777889999999975.99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1119.16
//
Query:       MMETSP1174-20130828|9939_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1174-20130828|9937_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.63
# Mc/sec: 1298.94
//
Query:       MMETSP1174-20130828|9943_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 181.93
//
Query:       MMETSP1174-20130828|9940_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   20.8  61.8      0.011   11.3  22.6    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0016   14.0  60.1     0.0023   13.5  20.7    2.5  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  22.6   5.2e-06     0.011     285     463 ..      19     194 ..       1     219 [. 0.45
   2 !   11.3  18.8   5.4e-06     0.011     713     870 ..     214     370 ..     165     429 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.2e-06
   TIGR02168 285 elqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                 + ++e ++l+ae++ l++++e++ker++ l++++++l ++l+ +++++ + +++++ele ++++l++e    e++le+  ae+e    +++ ++ e+++ r+ + +   q+ +l+++ ++le ++++ +++ +  ++ +  ++ +++  e e+++++ el+ ++++ e+l+ + e+l++
  MMETSP1174-20130828|9940_1  19 RSDEEKKRLNAELQSLQSQVEEAKERKKILSTQSNKLANELRVAKRRRVTVAAQKKELEVQITDLEAENRGNEKSLEKVIAEKERCMVENDVMRLEVKRIRDVLTSKADQVFTLENRRQQLELSMQERKQEIAVHQDVQ-RAQLRFD--EDEKHRVSVELAGRKQAVEKLRGKYETLIK 194
                 2233333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444433222222.2222333..455555556666666666666555555544 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.4e-06
   TIGR02168 713 eeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaee....elkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeel 870
                 +     + ++ eel+ + ++l+++++++eke+++l+++l++l+ +++ l+++   +++e  +++e    +lk a++ + + e+++++lk+++++ +++l+++++++++l+e+  ++ ++++++e+e+ + + ++e+++++ ++l+ + ++ +   e+ + ++
  MMETSP1174-20130828|9940_1 214 Q-----VAQRREELQCEGDKLDQSIRKAEKEIQALSHTLEHLKGKNTALRQSHLPADKETIQQSEtmglQLKLAKDALFKKEKQLQRLKTDHEDDSRRLEQVRQQASRLDERRGHLGKACQQIEDEVGSHKLMVEKMRKKVAKLSSQHKQRAGTPESETIQE 370
                 2.....222333333333333333333344444444444433333333333333222222222210111344444555555555555555555555555555555555555555555555555555555555555555555544444443333333332221 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4  23.8   0.00031      0.64     272     490 ..       6     223 ..       2     232 .. 0.85
   2 !   13.5  20.7   1.1e-06    0.0023     301     505 ..     112     326 ..     100     335 .. 0.80
   3 !   11.3  12.9     5e-06      0.01     671     793 ..     234     360 ..     228     390 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00031
   TIGR02169 272 ekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkee..leklekelsele 490
                 ++  +++++ + + ++ee+ ++ ++l++l++++e++++  +    + ++++++l+ a+ ++  ++++++ele +i++ ++e +  ++ l++  +e e  + e + +  e +++r+ l ++  ++  l++++++l+     ++e+++++  ++   +a+l   e++++ +  el   +++++k ++k e+l ++  + e+    +++   l ++ ++++el+
  MMETSP1174-20130828|9940_1   6 QQMERKVARGMGERSDEEKKRLNAELQSLQSQVEEAKERKKILSTQSNKLANELRVAKRRRVTVAAQKKELEVQITDLEAENRGNEKSLEKVIAEKERCMVENDVMRLEVKRIRDVLTSKADQVFTLENRRQQLE---LSMQERKQEIAVHQDVQRAQLRFDEDEKHRVSVELAGRKQAVEKLRGKYETLIKMSGQGEDGEAPKSQAfyLIQVAQRREELQ 223
                 4555667777778999*************************************************************9999999999999999999999999999999999999999999999999999999999...66789999999999999999999999999999999999999******999999998877765555444411335555555555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.1e-06
   TIGR02169 301 kaeiekleraiaekeeeledaeerlakaeaeidklkeeieele....reieeekkereklkeelkelkeeleelraeleevdkeaaelre..elkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleela.eeikkaeq...kleqlkedlekaekelrklkeeleklekelselerelaeleaqakasee 505
                 + e++++++ +  k++++  +e+r++++e  +++ k+ei+  +     +++  + e+++++ el+ +k+  e+lr + e + k + +  +  + k++   l ++ ++++el+ e d+l +  +++e+e++ l + le+++ k ++l ++   ++ e i+++e+   +l+ +k+ l k ek+l++lk++ e+ +++l++++++ ++l+ ++  + +
  MMETSP1174-20130828|9940_1 112 RLEVKRIRDVLTSKADQVFTLENRRQQLELSMQERKQEIAVHQdvqrAQLRFDEDEKHRVSVELAGRKQAVEKLRGKYETLIKMSGQGEDgeAPKSQAFYLIQVAQRREELQCEGDKLDQSIRKAEKEIQALSHTLEHLKGKNTALRQSHLPADkETIQQSETmglQLKLAKDALFKKEKQLQRLKTDHEDDSRRLEQVRQQASRLDERRGHLGK 326
                 457899**************************99999986443111135556678999**********************99988776651155666667899*******************************************887766650557777764446777788888888888888888888888888888888888887766555 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 5e-06
   TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelss....klsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseek 793
                 ++ +++++ l++ le+L+ +  +l++    ++k+  + s+    +l+ a+  + ++ek+l++l+ ++e  ++rle+++++ s l+e +    +  +++e e+ + +  ++k+++++++l  + ++  
  MMETSP1174-20130828|9940_1 234 RKAEKEIQALSHTLEHLKGKNTALRQSHLPADKETIQQSEtmglQLKLAKDALFKKEKQLQRLKTDHEDDSRRLEQVRQQASRLDERRGHLGKACQQIEDEVGSHKLMVEKMRKKVAKLSSQHKQRA 360
                 567788999**********99999998877766665555512225688999999****************************************************************987766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       411  (0.100195); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.17s 00:00:00.93 Elapsed: 00:00:00.87
# Mc/sec: 693.32
//
Query:       MMETSP1174-20130828|9944_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.2   0.8    0.00012   19.1   0.5    1.0  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    0.00018   18.5   0.8    0.00021   18.3   0.5    1.0  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00056   16.6   1.1    0.00066   16.3   0.8    1.0  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
     0.0015   15.6   0.5     0.0016   15.4   0.3    1.0  1  TIGR00899 2A0120: sugar efflux transporter
  ------ inclusion threshold ------
      0.011   12.5   0.9      0.012   12.3   0.6    1.0  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      0.032   10.8   1.0      0.062    9.8   0.7    1.4  1  TIGR00892 2A0113: monocarboxylate transporter


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   1.8e-07   0.00012     250     335 ..      10      92 ..       3      99 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.8e-07
   TIGR00883 250 lkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamy 335
                 +++   l+++ ++  l+ + a+ l++++ p++ +lsd++  r++lil ++l+ ++ v   s+   ++  ++ l+++ ++a +++m+
  MMETSP1174-20130828|9944_1  10 ATEH--LNMTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILPGMLLNATSVATQSTCISAE-PYAGLVVITGFANALGMV 92 
                 4444..779999999999*********************************9999998888877444.455556666666555555 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.5     3e-07   0.00021      23     104 ..      12      94 ..       8     100 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-07
   TIGR00881  23 eeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflai.gLilvaivnlflgfssslwvliallalnGlfqglgwppc 104
                 e++ ++ ++lGl++++ + + ++       +sD+   r fl + g++l a     ++   s    + l++++G++++lg++ +
  MMETSP1174-20130828|9944_1  12 EHLNMTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILpGMLLNATSVATQSTCISAEPYAGLVVITGFANALGMVSA 94 
                 78899******************************9988876548999999888999999******************99865 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.8   9.7e-07   0.00066     283     363 ..      11      92 ..       7      97 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.7e-07
   TIGR00711 283 qqvlgytalqaGlailpvglaalllsPiaGrladkidlrllvli.glilyavglyliavklepdtdfle.illkllirglgls 363
                  + l++t+ q Gl+ +  +  + +++P a +l+dk+  r+ +++ g++l a ++ ++++++  + +++  ++++ +  +lg+ 
  MMETSP1174-20130828|9944_1  11 TEHLNMTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILpGMLLNATSVATQSTCISAE-PYAGlVVITGFANALGMV 92 
                 5567899****************************96666555527888888888888666655.555504555777788775 PP

>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.3e-06    0.0016      22     100 ..       8      89 ..       4      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.3e-06
   TIGR00899  22 vfLseevkarpaavGlfytlsaivgiavsqllakasDkqgdrkkLilaclllavlaavl...falnrnYlvllvlgvlLssl 100
                 +f +e +++    +Gl+++++a +  +  ++ +  sDk  dr+ Lil  +ll +           +  Y  l+v++ +  +l
  MMETSP1174-20130828|9944_1   8 LFATEHLNMTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILPGMLLNATSVATqstCISAEPYAGLVVITGFANAL 89 
                 7889999999************9999999**********************9876543201033455666666666665555 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.8e-05     0.012      46     122 ..      13      94 ..       6      99 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
   TIGR00895  46 ewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllv.sill..fsvftl.asalatnvtqLlvlRfla.glGlGgl 122
                  +++++++lG +++ +   m++ a + ++l+D++  +r l++ ++ll   sv t   +  a+ +  L+v+  +a  lG+ ++
  MMETSP1174-20130828|9944_1  13 HLNMTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILpGMLLnaTSVATQsTCISAEPYAGLVVITGFAnALGMVSA 94 
                 68999***********99****************855555551555521233333135556777777776655524666555 PP

>> TIGR00892  2A0113: monocarboxylate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.7   9.1e-05     0.062      51     130 ..      16      95 ..       6      99 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.1e-05
   TIGR00892  51 asyseiaWissillavlyagGPlssilvnkfGsrpvvliGgllaslGlilasfsssvlelyltiGvitGlGlalnlqpal 130
                  ++s++  + +   +++ ++ P ++ l +k   r  +++ g+l  +  +++  +    e y  + vitG+  al + +al
  MMETSP1174-20130828|9944_1  16 MTTSQLGLMFAGAATLMAMTAPFATALSDKLPDRRFLILPGMLLNATSVATQSTCISAEPYAGLVVITGFANALGMVSAL 95 
                 56666666666667778888888888888888888888777776666666665555677788888888877777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|9946_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 217.39
//
Query:       MMETSP1174-20130828|9947_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|9948_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|9950_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.59
# Mc/sec: 633.10
//
Query:       MMETSP1174-20130828|9951_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 713.37
//
Query:       MMETSP1174-20130828|9952_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 1079.01
//
Query:       MMETSP1174-20130828|9954_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 953.25
//
Query:       MMETSP1174-20130828|9958_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 498.63
//
Query:       MMETSP1174-20130828|9961_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 431.50
//
Query:       MMETSP1174-20130828|9963_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|9962_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 969.18
//
Query:       MMETSP1174-20130828|9966_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1095.15
//
Query:       MMETSP1174-20130828|9969_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9971_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|9970_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1266.47
//
Query:       MMETSP1174-20130828|9977_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9973_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|9975_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 965.77
//
Query:       MMETSP1174-20130828|9976_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|9982_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|9980_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-19   68.3   1.5    3.5e-19   67.2   0.0    1.9  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.2e-10   37.4   0.0    2.2e-10   37.4   0.0    1.6  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.7e-22   3.5e-19       3     104 ..       8     103 ..       6     140 .. 0.73
   2 ?   -0.9   1.1     0.088   1.8e+02      40     115 ..     191     266 ..     155     269 .] 0.51

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 1.7e-22
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggg 104
                 Y+iLgv++d+s + i+kAY k a k HPD++++++ a e+f+  ++A+ vLsd+ +++ YD+ g  + ++++   + g ++      g  ++ f+ +f + +
  MMETSP1174-20130828|9980_1   8 YDILGVTRDSSPAVIRKAYFKAALKCHPDKCPDDPLATERFQALSRAHVVLSDPGRKELYDETGVVDDDDTMHD-TPGEDD-----SGVWDRYFRGVFRDVT 103
                 ****************************************************************9999886544.222222.....2333333444333322 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.088
   TIGR02349  40 eekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrrrskarr 115
                 ++  +e +eA   L++ + ++     ++a+  gga++    ++++++s+f+++ + +e  ++++g+sg+ ++k+rr
  MMETSP1174-20130828|9980_1 191 KKAAQEAEEAEALLKQIQAKRGLAGGSSAACGGGAASLIIANQKHRQSSFESMISDLEGRYSSEGSSGKGKKKRRR 266
                 2223355566666666665555555444444444444333233333344555444444445544444444555555 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.1e-13   2.2e-10       4      77 ..       7      79 ..       4     122 .. 0.85
   2 ?   -3.7   1.5      0.29     6e+02      97     130 ..     169     200 ..     150     213 .. 0.59

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.1e-13
   TIGR03835  4 yyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDreddl 77
                 y++Lg++rD+    i+ka+ k a k hPD+  + + a + f+ +  a+ vLs+P +++ yD  G   vD++d +
  MMETSP1174-20130828|9980_1  7 LYDILGVTRDSSPAVIRKAYFKAALKCHPDKCPDdPLATERFQALSRAHVVLSDPGRKELYDETGV--VDDDDTM 79
                59*****************************9888***************************9995..4544444 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.29
   TIGR03835  97 fddltdddkkskkkkkkkkkgwfwakskeeekti 130
                 f  +  d+k +k  +kk+k+    +k+ +e ++ 
  MMETSP1174-20130828|9980_1 169 FKKFETDQKGKKSGDKKRKRR--MKKAAQEAEEA 200
                 555444555555555554443..34444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 887.63
//
Query:       MMETSP1174-20130828|9983_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|9978_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1220.23
//
Query:       MMETSP1174-20130828|9988_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1174-20130828|9989_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-09   32.9   0.0    5.4e-09   32.3   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.7e-06   25.5   0.2    3.3e-06   24.5   0.1    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.013   12.4   0.0      0.029   11.3   0.0    1.6  1  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.9e-12   5.4e-09      17     186 ..     145     304 ..     130     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.9e-12
   TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaae.tgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaks.DlYaWGLivleCLtGk 186
                 + +r++ R   ei    ++ hPni ++  +G+  ++ + ++     G  l e++   G    ++   ++ +  + a++  h+  v h D++P+nimv ++ +  + k++DF       + ++      t  +  +G+ ++aaPe L ge   +ks Dl+a G  +le   G+
  MMETSP1174-20130828|9989_1 145 NLTRRIDRICNEIRTLRAIDHPNIAKI--RGVYHEEEVISILLESSGCDLFELIGKYGLEMNIDqRLQVATSLMMAVSYLHSINVCHMDIRPENIMVENTPT--TLKIVDFETCV-TYDPNE------T-YQMRVGTEEFAAPEMLMGEEYNPKSvDLWALGYTLLEMEIGH 304
                 55688888899**************98..89999999****999**************75555415677888999**********************87765..579****8654.344444......2.23358******************988***********88887 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.4e-09   3.3e-06      15     133 ..     124     251 ..     114     266 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.4e-09
   TIGR03724  15 flglkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpeekki..vmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivkdd..klyliDf 133
                 + ++++  K+ + K+Y +++++   r +R  +E+r l+++ +  +    ++ v +ee  i  ++e  +g +l +l+ +  l        ++++++  +v+ lH+ +++h D+ ++Ni+v+++  +l ++Df
  MMETSP1174-20130828|9989_1 124 WCDCRTSGKTLLVKEYHKKRFNLTRRIDRICNEIRTLRAIDHPNIA--KIRGVYHEEEVIsiLLES-SGCDLFELIGKYGLemnidqrlQVATSLMMAVSYLHSINVCHMDIRPENIMVENTptTLKIVDF 251
                 6666666788889*************************99998665..455555554444214443.556666665554444555566699999*************************865114556887 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.1e-05     0.029     145     178 ..     224     259 ..     189     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.1e-05
   TIGR02721 145 klallHlDvhaeNlv..kteqGlklIDWEYAsdgDi 178
                 ++  +H+D+  eN++  +t+  lk++D E     D+
  MMETSP1174-20130828|9989_1 224 SINVCHMDIRPENIMveNTPTTLKIVDFETCVTYDP 259
                 5779*********9934478899*****98777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1037.43
//
Query:       MMETSP1174-20130828|9991_1  [L=965]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-167  556.0  15.8   3.2e-167  555.6  11.0    1.2  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
   6.7e-154  511.5  32.0    2.4e-62  209.3   6.2    4.5  4  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
     8e-101  336.0  34.6    8.9e-39  131.3   7.0    4.7  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    2.3e-77  258.3  12.7    3.1e-44  149.0   2.5    3.2  3  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    1.1e-41  140.7  11.9    2.3e-19   66.9   1.7    3.1  3  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    1.1e-40  137.2  23.5    2.4e-26   89.8  10.9    2.9  2  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.9e-38  130.0  14.5    5.1e-21   72.4   5.6    3.3  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    5.2e-32  108.6  14.5    5.2e-25   85.5   1.8    3.5  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.9e-24   83.1  10.5    4.2e-09   32.3   0.6    4.1  4  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    3.6e-23   79.2  17.3    1.8e-17   60.3   0.2    3.6  3  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.4e-22   77.2  15.4    7.6e-18   61.5   0.3    4.1  4  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    2.6e-22   76.4  13.1    1.1e-16   57.8   0.3    4.1  4  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    3.7e-18   62.4  13.8    9.9e-13   44.4   0.5    4.1  4  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    8.3e-08   28.2  12.0    0.00078   15.1   0.4    4.0  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    1.3e-05   22.7   0.7    0.00087   16.8   0.3    2.2  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
    0.00039   18.8   0.0    0.00039   18.8   0.0    2.7  2  TIGR02052 MerP: mercuric transport protein periplasmic component
     0.0013   16.7   0.0     0.0032   15.5   0.0    1.7  1  TIGR00003 TIGR00003: copper ion binding protein
     0.0021   15.5   2.4     0.0044   14.5   0.5    2.2  3  TIGR00338 serB: phosphoserine phosphatase SerB
     0.0041   14.8   3.1       0.57    7.8   0.2    2.6  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal


Domain annotation for each model (and alignments):
>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.6  11.0  1.5e-169  3.2e-167       1     560 []     237     886 ..     237     886 .. 0.93

  Alignments for each domain:
  == domain 1    score: 555.6 bits;  conditional E-value: 1.5e-169
   TIGR01525   1 mdlLivlatlaalavslvlega.................lllvllllgelLeelakskasealsellelapeealllkedd.........seeevaveelqvgDivkVkpGekipvDGeviegesevDesllTGEslpvekkegdeViaGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltflvwlalga............................lka.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse.................seeellalaaalessseHplakaivkyakekslelkkveveeveevpgkgvsakvdge.......eevrigneklle.....eleaeee......kvkeeleeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi.idevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllpla.......llavllmegstvlvvlnslrl 560
                 md L++l++ ++++ s++++++                 +ll++++lg++Le+ a++++++als+l++++p +al++++            ee++++++++ gDi++V p + +pvDG+v++g+s vDe+++ GE++pv+k++gd V++Gt+n+ + l+i++t+vg+d+ l+qiv+lveeaq+ska+iq lad++a+ f p++++++++tfl wl+ ++                            + a +a+  a+avLvvacPcaLglatp+a++v++gv+a++G+Likgg++lE++ kv+ v++DKTGTLT G+l+++dv  ++ +                   +  +l+laaa+e sseHp+++ +v+++k+++l++ ++e  + + v+g g+ a++  e         v +gn +lle                  ++k  +++ ee+ kt+v+vavd+ ++g++al+D+++p a +++a+Lk+ g+ev+++tGDn+s+a+avA +lgi  ++v a++lP+ K+++v+ lq  +g++va+vGDGiND+pALaaAdvGia+g+g++va+eaA++vl+rdd+  v  a+dl+r+++++i+ N v+al+yn++ +p+aag++lp+         +a+++m+ s+++vvl+sl+l
  MMETSP1174-20130828|9991_1 237 MDFLVSLGVGGSYVSSVLVLLIrlihenfdkpvmfetsaMLLTFITLGKFLETSARGHTTAALSKLAAMQPARALRIRKRTrssdgvqetVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRPGDMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSMVTFLWWLVAINmrwvdprwfvsdyltddamssmgdaeypDAAlFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEPQCkafskrfgiscgadvggCQGLVLRLAAAAELSSEHPIGQGVVSATKARGLKPFEAE--SARVVVGGGIVATIPLEsggktenVGVAVGNLRLLEtealiD-----CshknmtECKLVARALEEEAKTAVFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIsPSHVLAKVLPQGKADHVHWLQ-GQGHVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVFSVPAAAGAMLPFVhgfhmrpEVAAVAMACSSIAVVLSSLAL 886
                 89***************99999********************************************************9889999**9988999************************************************************************************************************************998889*******************9998765432479************************************************************************9997644666555666666555553456666****************************8655..*************98888889988667888888777444333.....2333447777788888999**************************************************************9*******************9.56778*************************************************************************************99************************986 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.9   7.4e-63   1.6e-60       2     214 ..     219     456 ..     218     458 .. 0.89
   2 !  102.1   2.9   3.4e-32   7.3e-30     209     289 ..     487     567 ..     485     575 .. 0.94
   3 !    8.1   0.0    0.0011      0.23     288     319 ..     588     619 ..     580     647 .. 0.83
   4 !  209.3   6.2   1.1e-64   2.4e-62     330     541 ..     667     886 ..     649     887 .. 0.92

  Alignments for each domain:
  == domain 1    score: 203.3 bits;  conditional E-value: 7.4e-63
   TIGR01511   2 gkpfyksawkalkskaanmdvlialgttvaylySlval...........eafFdelallivllllGrlleelakskaskalekLaklkpeea..............tllkkdvdveelqvgdilkvkpgekipvDGvvveGesevdeslltGEslpvkkkvgdeviaGtvngegsllvkvtkvgedtllaqivklveeAqqskakiqrlAdkvaslfvpvviaiavltfviWllalev 214
                 g ++y +a+k +++++  md l++lg++ +y+ S+++l            + F+++a+l+++++lG++le+ a++++++al+kLa+++p+ a              + +++d+d ++++ gdil+v p + +pvDGvvv+G+s vde +++GE++pv+k++gd v++Gt+n+   l++++t+vg+dt l+qiv+lveeAq+ska+iq lAd +a++f+p++i+++++tf+ Wl+a+ +
  MMETSP1174-20130828|9991_1 219 GGRYYLAAYKGFQHNTIGMDFLVSLGVGGSYVSSVLVLlirlihenfdkPVMFETSAMLLTFITLGKFLETSARGHTTAALSKLAAMQPARAlrirkrtrssdgvqETVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRPGDMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSMVTFLWWLVAINM 456
                 8899******************************98753333322222235799***********************************999333322222222223467899999***********************************************************************************************************************975 PP

  == domain 2    score: 102.1 bits;  conditional E-value: 3.4e-32
   TIGR01511 209 llalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelsesl 289
                 l+a++ a++vl++aCPcalGLA+p++v+v+tg++a++Gvlik+g++le+a +v+ v++DKTGTLT G+l++t+v++++ + 
  MMETSP1174-20130828|9991_1 487 LFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEPQC 567
                 5899**********************************************************************9887765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0011
   TIGR01511 288 sllalaaaleasseHplakaiveyakGkgveg 319
                  +l+laaa+e sseHp+++++v+++k  g++ 
  MMETSP1174-20130828|9991_1 588 LVLRLAAAAELSSEHPIGQGVVSATKARGLKP 619
                 6799********************99998874 PP

  == domain 4    score: 209.3 bits;  conditional E-value: 1.1e-64
   TIGR01511 330 neklleeealktdekeekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi...evlaevlPedKaakvkelqek..kvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvlln.dlkdvataielsrktlkkikqNllwalgYNviaipiAagvlvpig..lllsPavaavamalSsvsVvlnalll 541
                 ++k ++e +l     ee+++t+v+va+++ +++vlal+d++kp+a +++++Lk+ g+ev+++tGDn+++akavA +lgi   +vla+vlP++Ka+ v+ lq +  +va+vGDGiND+paLaaadvgia+gag++va+eaa++vl++ d+ +v  a++l+r ++++i++N++wal+YNv+++p Aag+++p+   + + P vaavama+Ss++Vvl++l+l
  MMETSP1174-20130828|9991_1 667 SHKNMTECKLVARALEEEAKTAVFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIspsHVLAKVLPQGKADHVHWLQGQghVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRdDIFAVCVALDLARTVFQRIRLNYVWALAYNVFSVPAAAGAMLPFVhgFHMRPEVAAVAMACSSIAVVLSSLAL 886
                 56677778888888889999999********************************************************55559**************99754339*************************************9963699****************************************97689**********************998 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   1.0     2e-38   4.3e-36      20     183 ..     273     450 ..     269     458 .. 0.89
   2 !   84.3   3.3   7.6e-27   1.6e-24     182     259 ..     487     564 ..     483     571 .. 0.94
   3 !    9.5   0.0   0.00035     0.075     259     287 ..     588     616 ..     584     636 .. 0.86
   4 !  131.3   7.0   4.1e-41   8.9e-39     302     475 ..     683     861 ..     674     887 .. 0.86

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 2e-38
   TIGR01512  20 egalllllfslgetLeelaskrakealkaLlelaPdtarr..............leeeVaveelkvgdvvvVkkGervPvDGevlsgessldesalTGEsvpvekakgdevlaGainldgvlkievtkeaedstiakivklveeaqsekaktqrlidrlaekytlvvlliallialvs 183
                 ++a+ll++++lg++Le  a +++++al++L++++P +a r              +ee++++++++ gd++ V +  ++PvDG+v++g+s +de+++ GE+vpv+k++gd v++G++n+  +l ie+t+  +d+++++iv+lveeaq++ka++q l+d++a+ +++++++++++++l  
  MMETSP1174-20130828|9991_1 273 TSAMLLTFITLGKFLETSARGHTTAALSKLAAMQPARALRirkrtrssdgvqetVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRPGDMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSMVTFLWW 450
                 689***********************************872222222222222234678999************************************************************************************************************99987755 PP

  == domain 2    score: 84.3 bits;  conditional E-value: 7.6e-27
   TIGR01512 182 vssllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdveale 259
                 +  +++a+++Lvva+PCaL +++p a++ + +  ar+G+likgg+vle++ kv+ v++DKTGTLT G+l+++dv+a+e
  MMETSP1174-20130828|9991_1 487 LFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAME 564
                 5678899******************************************************************99876 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00035
   TIGR01512 259 ellalvaaveqkssHplaraiveaeevpG 287
                  +l+l+aa+e +s+Hp+++ +v+a++  G
  MMETSP1174-20130828|9991_1 588 LVLRLAAAAELSSEHPIGQGVVSATKARG 616
                 589*******************9998766 PP

  == domain 4    score: 131.3 bits;  conditional E-value: 4.1e-41
   TIGR01512 302 gkkrtivlvaldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG...devhaellPedKveivkelke....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgvlplwlav 475
                 ++++t+v+va+d+ ++g++al+D++++ a +++a+Lk+ g+ ++ ++tGD++++a++va +lG    +v a++lP+ K ++v+ l+     va+vGDGiND+paLaaAdvgia+G +g++va+e+A++vl++dd+  +  a++lar++ + ++ n v al+  ++ + +a+  +lp + + 
  MMETSP1174-20130828|9991_1 683 EEAKTAVFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGL-EVWMVTGDNASTAKAVALQLGispSHVLAKVLPQGKADHVHWLQGqghvVAVVGDGINDSPALAAADVGIAVG-AGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVFSVPAAAGAMLPFVHGF 861
                 56799***********************************6.77*******************555589*************97764333399**********************.9**********************************************999999988888766543 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   5.7e-19   1.2e-16      10     158 ..     294     454 ..     289     460 .. 0.86
   2 !   55.5   0.4   3.3e-18   7.2e-16     162     235 ..     487     563 ..     480     569 .. 0.90
   3 !  149.0   2.5   1.4e-46   3.1e-44     288     463 ..     668     853 ..     623     860 .. 0.91

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 5.7e-19
   TIGR01494  10 allealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvllsgsaevdessLtGEsnpvekk..eavfagtinfegtlklk.........vskiavvvktgs.ektplqrkldklalifllallllallvfllvliel 158
                 ++++al+k +a++ +r+l+ ++ + ++  v +  e+ i+++ +  GDi++v    ++p+Dgv+++g+++vde++++GE +pv k+  ++vf+gt n  + l ++         +s+i+++v++++ +k+p+q  +d +a +f  +++++ +++fl++l  +
  MMETSP1174-20130828|9991_1 294 HTTAALSKLAAMQPARALRIRKRTRSSDGVQETVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRpgDMVFGGTLNQLSPLVIEatrvgddtaLSQIVRLVEEAQnSKAPIQALADSIAAVFAPFMIVVSMVTFLWWLVAI 454
                 57788999999999999999999999999***99**************************************************7558999999998777766511111122267889999988625789***************************9876 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 3.3e-18
   TIGR01494 162 lkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvig 235
                 l++++ a+++lv+a+P+aL++a+++a++vg+   a   +l++  ++lee+ kv+ +++DKTGTLT+++++l++v+  
  MMETSP1174-20130828|9991_1 487 LFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGArhgVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAM 563
                 679***************************975544449********************************999765 PP

  == domain 3    score: 149.0 bits;  conditional E-value: 1.4e-46
   TIGR01494 288 lervkkleekleelaseglrtlavaskeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelgl.....farvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiaisA.....kaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvl 463
                 ++++++++   + l++e+ ++++va ++ ++G+lal d++++++ +t+++lk+ g++v+m+TGDn +tAka+a +lg+     +a+v P+ Ka+ v  l+ +g+vva++GDG+ND pAL+aAdVGia++A      +aa++vl++d++++v  +l+ +r++++ri  +++++l++n+  ++ ++++
  MMETSP1174-20130828|9991_1 668 HKNMTECKLVARALEEEAKTAVFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIspshvLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGAgaqvaVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVFSVPAAAGA 853
                 567778888899999************************************************************997555558********************************************963333378******************************************9998875 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.5   3.5e-19   7.5e-17     103     312 ..     329     565 ..     303     573 .. 0.90
   2 !   20.1   0.0   1.5e-07   3.2e-05     433     482 ..     697     746 ..     692     752 .. 0.94
   3 !   66.9   1.7   1.1e-21   2.3e-19     515     606 ..     751     842 ..     748     874 .. 0.91

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 3.5e-19
   TIGR01647 103 qeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekklgdiaysgsvvkkGEveavvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkrkeslres............................lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivke 312
                 ++++a+++  GD++++   +++p D  +v+g+   vD+  + GE +pv k+ gd+++ g   +   +    +  G +t + + ++Lveea+++ + +q++  +i av   +++v+ ++++l  l+  + + ++                             +  a+++lv++ P al     +++ vG+   a++++++k    +Ee   v+++  DktGtlt   ls+++ ++++ 
  MMETSP1174-20130828|9991_1 329 EDIDATSVELGDILRVLPASAMPVDGVVVKGQ-SYVDEKMINGEPVPVAKRPGDMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSMVTFLWWLVAINMRWVDPrwfvsdyltddamssmgdaeypdaalfaFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEP 565
                 4799***************************9.79***********************9999888887778888******************************9988777777777666666665555555556677889999****************887778999*************************************************************99887765 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.5e-07
   TIGR01647 433 llgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglg 482
                 ++g+l+l D  ++ +  t+ + k++g+ev mvtGD+   ak +a +lg+ 
  MMETSP1174-20130828|9991_1 697 VVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIS 746
                 68*********************************************997 PP

  == domain 3    score: 66.9 bits;  conditional E-value: 1.1e-21
   TIGR01647 515 FAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrval 606
                  A+v P+ k   v+ lq +gh+v++ GDG+nD+PaL  AdvGiAv      A  aa++vl++  + ++  A+  +R +FqR++   ++++a 
  MMETSP1174-20130828|9991_1 751 LAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAY 842
                 599******************************************9999********************************98666666655 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.6   1.4e-16   3.1e-14      43     236 ..     249     444 ..     233     459 .. 0.71
   2 !   89.8  10.9   1.1e-28   2.4e-26     251     551 ..     491     813 ..     473     828 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.4e-16
   TIGR01497  43 lvtllvtiapalfgtkgknlrlfnaivtgilfitvlfanfaeavaeGrgkaqadalkk...tkketlaklls.....kdgaikkvpadelkkGdvvlveaGdvipadGevieGvasvdesaitGesapvlkesGgdfasvtGGtrivsdwlvvevtadpGesfldrmialveGaerrktpneialtvllvaltlvfllvvat 236
                  v+ ++ + + l  ++ + + +f++    + fit  +  f e+ a G + a    l +   ++   + k+ +     +++  ++++a+++  Gd++ v     +p dG v++G + vde  i Ge  pv k +G     v GGt      lv+e t    ++ l +++ lve a+  k+p +  l+  ++a+   f++vv+ 
  MMETSP1174-20130828|9991_1 249 YVSSVLVLLIRLIHENFDKPVMFETSAMLLTFIT--LGKFLETSARGHTTAALSKLAAmqpARALRIRKRTRssdgvQETVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRPGD---MVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQA-LADSIAAVFAPFMIVVSM 444
                 5555555555555555556677777666666665..68999999999998876555441014444455544411111334456899***********************************************95...4899*9988889******************************874.433333433444444432 PP

  == domain 2    score: 89.8 bits;  conditional E-value: 1.1e-28
   TIGR01497 251 svlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvq..............Gad....kkkladvavlasladdtpeGksivelakklgiredtkkses.aefveftaktrm.sGinlengravrkGavdaikkrv.eerkGripkdldeavekvakqGgtplvvvvdnkiyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGvd..dfiaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamnsGtqaakeaanmvdlds 551
                    +a+lv+  p ++G    +  + G    ar  v+   G  +e a  v  +++dktGt+t G+   ++  +++              Gad    +  +   a  a l  + p G+ +v  +k  g++  + +s + + +  + a   + sG + en   v  G +  +      + + +  ++       + +   t + v+vd+ ++Gv++l d +k+      + l+ +G+   m+tGdn  ta ++a + G+     +a++ p+ k + ++  q +G++va+ GdG nd+pala advg+a+ +G+q a eaanmv +  
  MMETSP1174-20130828|9991_1 491 MSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEpqckafskrfgiscGADvggcQGLVLRLAAAAELSSEHPIGQGVVSATKARGLKPFEAESARvVVGGGIVATIPLeSGGKTEN-VGVAVGNLRLLETEAlIDCSHKNMTECKLVARALEEEAKTAVFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISpsHVLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRD 813
                 456999*********988888888999999*********************************8655444333211111111111111444222134567789999999**************9999976655543044444555443326777777.55555666555443302233333445555555566678899********************************************************963379**********************************************************97655 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.3   5.4e-18   1.2e-15     147     383 ..     309     562 ..     296     573 .. 0.82
   2 !   72.4   5.6   2.4e-23   5.1e-21     531     704 ..     693     847 ..     656     858 .. 0.90

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 5.4e-18
   TIGR01517 147 reLnekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkekLlsGtkvlegsgrml.vtavGvnsvtGklltelreage.eeplqlkLselasligkfGlgsavllll...vlvl......ryviekived.......teekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyi 383
                 r L+ +k+ ++  ++++  e  i+ + v  GDi+++     +p+Dgv+++G +  +De  + Ge  p+ k + +++ G ++++ s  ++ +t vG ++   +++  ++ea++ + p q   +++a   + f ++++++++l   v++       r++++   +d       ++e+    l  f++a+ ++vva P +L La   a+  ++    + + l++  +  e     t +  DktGtLt   +s   +  
  MMETSP1174-20130828|9991_1 309 RALRIRKRTRSSDGVQETVEEDIDATSVELGDILRVLPASAMPVDGVVVKG-QSYVDEKMINGEPVPVAKRPGDMVFGGTLNQLSPLVIeATRVGDDTALSQIVRLVEEAQNsKAPIQALADSIAAVFAPFMIVVSMVTFLwwlVAINmrwvdpRWFVSDYLTDdamssmgDAEYPDAALFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSA 562
                 66777788888899999999*******************************.7789*********************9999998877664789***********999887651679******************999998633233322222223444444333111111144555678899**************************************************************98888776655 PP

  == domain 2    score: 72.4 bits;  conditional E-value: 2.4e-23
   TIGR01517 531 kglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelalegkefrkdkilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvav 704
                    v+++v+   d +++ +  +v++ ++ G+ v mvtGDn staka+a + gi +                    +vla+  P+ k   v+ l+ +g+vvav GDG nD+PaL  advG+a+g  G +va+ea++++l+ D+  ++  a+   R+v + i+    + L  nv +v
  MMETSP1174-20130828|9991_1 693 VDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISPS-------------------HVLAKVLPQGKADHVHwLQGQGHVVAVVGDGINDSPALAAADVGIAVGA-GAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVFSV 847
                 5678999*****************************************99999775...................5899999999998886599****************************96.5**********************************998889999999887 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00014      0.03      54     208 ..     298     455 ..     266     462 .. 0.77
   2 !   17.6   1.7   8.3e-07   0.00018     212     294 ..     486     568 ..     483     592 .. 0.93
   3 !   85.5   1.8   2.4e-27   5.2e-25     454     607 ..     694     834 ..     667     853 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
   TIGR01116  54 aiealkeleseealvlrdarkakdlvpGdivelavGdkv..padvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklsk...vialicilvwvinik 208
                 a+ +l  +++ +al +r+ +++ d v   + e      v     +r+l   ++ vd  +++G+s   ek  +  + + a+ +    m+f Gtl      +   +r G +t++ +i + v+ea++ k P+++  d   + ++    v++++  l w++ i+
  MMETSP1174-20130828|9991_1 298 ALSKLAAMQPARALRIRKRTRSSDGVQETVEEDIDATSVelGDILRVLPASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRPG--DMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPfmiVVSMVTFLWWLVAIN 455
                 55566666666666666666666666655544333333310334699999999999999999999999999888888887777..8******99988888888999**************************9999998775222677888888888776 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 8.3e-07
   TIGR01116 212 aiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalekefk 294
                 a++ f  a+a+ v a P  l     t + +Gt   a++  l++    +e    +t++  dktGtlt   +s++ + a+e + k
  MMETSP1174-20130828|9991_1 486 ALFAFMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEPQCK 568
                 7899999********************************************************************99987655 PP

  == domain 3    score: 85.5 bits;  conditional E-value: 2.4e-27
   TIGR01116 454 klifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilssftGkefeeleekkalvfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGraiynnmkq 607
                 + +++Gv++l d  ++  + ++++ ++ G++v ++tGdn  ta+a+a ++Gi  s               v+++v P+ k   v+ l+ ++++va+ GdG+nd+Pal  ad+Gia+G+G++va ea+++vl  d+  ++  a++  r++++ ++ 
  MMETSP1174-20130828|9991_1 694 DKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISPS--------------HVLAKVLPQGKADHVHwLQGQGHVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRL 834
                 6789***********************************************9765..............58999999999998874799*****************************************987777778889********98764 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.3e-09   9.2e-07     236     292 ..     325     379 ..     296     383 .. 0.90
   2 !   14.6   0.1   4.5e-06   0.00097     399     476 ..     490     567 ..     477     598 .. 0.89
   3 !   16.2   0.0   1.5e-06   0.00031     649     697 ..     697     745 ..     691     749 .. 0.94
   4 !   32.3   0.6     2e-11   4.2e-09     779     829 ..     747     797 ..     745     821 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.3e-09
   TIGR01657 236 ekkeetiasdelvpgDivlisrleekllpcDavLlegscivnEsmltGEsvpvlKvp 292
                 e  ee i+++ +  gDi+ +     +++p+D v+++g+  v+E m+ GE vpv K p
  MMETSP1174-20130828|9991_1 325 ETVEEDIDATSVELGDILRVL--PASAMPVDGVVVKGQSYVDEKMINGEPVPVAKRP 379
                 45789999**********998..899****************************975 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.5e-06
   TIGR01657 399 ilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnae 476
                 ++ ++ ++++  P aL ++   +v+v+    +++g++      ++ a k+ +v  DKTGTLT  +l l+ v  ++ + 
  MMETSP1174-20130828|9991_1 490 FMSAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAMEPQC 567
                 678899999999********************************************************9999887654 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR01657 649 flGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgi 697
                 ++G l l  ++kp +  ++ +Lk    +v m+tGDn+ Ta  Va ++gi
  MMETSP1174-20130828|9991_1 697 VVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGI 745
                 57999999************************************99997 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 2e-11
   TIGR01657 779 kvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLse 829
                  ++V+A+v P+ K+  v+ l+  + +v+ +GDG ND  AL +AdvGi+  +
  MMETSP1174-20130828|9991_1 747 PSHVLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGA 797
                 578********************************************9754 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   3.9   4.7e-05      0.01      90     355 ..     273     558 ..     245     567 .. 0.74
   2 !   15.2   0.2   3.7e-06    0.0008     501     560 ..     692     751 ..     658     752 .. 0.84
   3 !   60.3   0.2   8.4e-20   1.8e-17     581     693 ..     749     859 ..     746     881 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.7e-05
   TIGR01524  90 avviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpid....elvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvskllirfmlvmvpv......vllinGls.........kGdwleaalfa....lavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivle 355
                 ++ ++++ ++l  +l+      ++ a + l +m  ++a  +r+ +   ++++e v  d     +  Gd++++     +p d  v++ +  ++ + ++ Ge +pv k   +       l +l  l++  t v   +a + +++   ++   +  +++  d   + f   +  vs++ + + lv + +       ++   +            ++ +aalfa    +av v   p  l +   +++  G+   +++ v++k  d +++   + ++  dktGtlt  ++ l 
  MMETSP1174-20130828|9991_1 273 TSAMLLTFITLGKFLETSARGHTTAALSKLAAMQPARALRIRKRTRSSDGVQETVEEDidatSVELGDILRVLPASAMPVDGVVVKGQ-SYVDEKMINGEPVPVAKRPGDMVF-GGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSMVTFLWWLVAINMrwvdprWFV-SDYLtddamssmgDAEYPDAALFAfmsaIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLT 558
                 44566777888888888888888888999999999***9999998888888877654422226778*******9*******9998876.5899*************9887766.677778888888888888888888888877777777777777777777777777777777777776665544111111333.3332011111211345778999973322566677799***************999*******************************9998886 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.7e-06
   TIGR01524 501 eeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandvl 560
                   + ++ G+la+ d  k ++  ++a+lk+ g++v ++tGdn   ++ + l++Gi  + vl
  MMETSP1174-20130828|9991_1 692 AVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISPSHVL 751
                 4566899***********************************************987776 PP

  == domain 3    score: 60.3 bits;  conditional E-value: 8.4e-20
   TIGR01524 581 avfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvleegvieGretfgni.lkylkmtassnfgnvfsvlv.asafipflp 693
                 +v+a++ p  k   v+ l+ +Gh+v  +GdGind+pal +advGi+v + a++a ea++++l+  ++  +  ++   r +f  i l y+   a     nvfsv   a a++pf+ 
  MMETSP1174-20130828|9991_1 749 HVLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIrLNYVWALA----YNVFSVPAaAGAMLPFVH 859
                 89********************************************************************************99678887666....59****7516799**985 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.011       2.5     108     258 ..     299     448 ..     250     458 .. 0.63
   2 !    4.0   0.6     0.008       1.7     272     343 ..     492     563 ..     485     577 .. 0.82
   3 !   17.1   0.1   8.9e-07   0.00019     486     540 ..     692     746 ..     660     750 .. 0.89
   4 !   61.5   0.3   3.5e-20   7.6e-18     565     653 ..     748     836 ..     745     855 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.011
   TIGR01522 108 lealnklvpaechliraGkeehvlasklvpGdlve..lsvGdrvpadlriveavdlsidesnltGettpvkksseaie.alaer.sniaymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfivigvivlv 258
                 l +l+ + pa +  ir+   +    ++ v  d+    +++Gd     lr++ a  + +d   + G++   +k  +  +  +a+r   + + Gtl +           G++t++ ++ ++++e ++ k+p+q+  d++   ++ + +iv++++ ++
  MMETSP1174-20130828|9991_1 299 LSKLAAMQPARALRIRKRTRSSDGVQETVEEDIDAtsVELGD----ILRVLPASAMPVDGVVVKGQSYVDEKMINGEPvPVAKRpGDMVFGGTLNQLSPLVIEATRVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPF-MIVVSMVTFL 448
                 444445556666666665555555555555554430033444....36777777777887777777777777654332124444256888899987765544455679************************999997655433.4555666555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.008
   TIGR01522 272 isvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytv 343
                  ++++ v a p  l +    ++ +G    +++  +++   ++e    v ++  dktGtlt  ++++t + ++
  MMETSP1174-20130828|9991_1 492 SAIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLSLTDVSAM 563
                 456667788888888777777777777788999999999999************************998766 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 8.9e-07
   TIGR01522 486 ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGla 540
                   d v  G+l l d  +p   ++v  l + G++v m+tGd ++ta ++a +lG++
  MMETSP1174-20130828|9991_1 692 AVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIS 746
                 5667899**********************************************96 PP

  == domain 4    score: 61.5 bits;  conditional E-value: 3.5e-20
   TIGR01522 565 vavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnnik.nf 653
                   v+a+  p+ k + v+ lq +G vva+ GdG+nd+pal +ad+G+a+G +G++va eaa+m+l+ dd  ++  a++  + +f  i+ n+
  MMETSP1174-20130828|9991_1 748 SHVLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVG-AGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRlNY 836
                 578999*******************************************.599********************************99344 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0026      0.57     148     294 ..     325     461 ..     274     470 .. 0.65
   2 ?    2.5   0.6     0.024       5.3     294     361 ..     489     556 ..     481     564 .. 0.82
   3 !   16.6   0.1   1.3e-06   0.00028     552     607 ..     690     745 ..     677     749 .. 0.89
   4 !   57.8   0.3     5e-19   1.1e-16     663     759 ..     750     845 ..     745     855 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0026
   TIGR01106 148 dgeklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrsp.efthenpletrniaffstncvegtargivvstgdrtvlgriaslasglesgktpiaieiehfidiitgvavflg.vsffilslileytflea 294
                 ++   +i+a  v +gd++ v     +p+d  +++ +   vd+  + ge  p ++ p ++          +  +s  ++e+t      ++gd t l +i  l    ++ k+pi +  + +  + +   +++  v+f+   ++++ ++++ 
  MMETSP1174-20130828|9991_1 325 ETVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQS-YVDEKMINGEPVPVAKRPgDMVFGGT-----LNQLSPLVIEAT------RVGDDTALSQIVRLVEEAQNSKAPIQALADSIAAVFAPFMIVVSmVTFLWWLVAINMRWVDP 461
                 2233345566666666666666666666666665554.36666666666665443313333332.....334555556655......689***********************999999999998877765266776777788888775 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.024
   TIGR01106 294 avifligiivanvpegl.latvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmt 361
                 a +  i+++v   p  l lat t ++  t    ar+  l+k  + +e     +++  dktgtlt   ++
  MMETSP1174-20130828|9991_1 489 AFMSAIAVLVVACPCALgLATPTAVMVGT-GVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDLS 556
                 55566888999999988688888776555.5679******************************87665 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.3e-06
   TIGR01106 552 fpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgi 607
                 f   + + vg+l++ d  + +   +v+  ++ g+ v mvtgd   taka+a  +gi
  MMETSP1174-20130828|9991_1 690 FVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGI 745
                 555556789*******************************************9998 PP

  == domain 4    score: 57.8 bits;  conditional E-value: 5e-19
   TIGR01106 663 vfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnip 759
                 v+a+  pq k   v   q qg +vav gdg+ndspal  ad+g+a+g ag++v+ +aa+m+l+ d++ ++   ++  r +f+ ++   +++l+ n+ 
  MMETSP1174-20130828|9991_1 750 VLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVG-AGAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVF 845
                 8999*******************************************.8*************98888888889************999999999985 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.015       3.2     125     184 ..     325     384 ..     302     403 .. 0.87
   2 !    5.9   0.6    0.0019      0.42     307     369 ..     493     555 ..     484     561 .. 0.86
   3 !   17.0   0.1   8.3e-07   0.00018     579     636 ..     693     750 ..     671     753 .. 0.86
   4 !   44.4   0.5   4.6e-15   9.9e-13     671     791 ..     750     876 ..     748     889 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.015
   TIGR01523 125 sskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikd.anlvf 184
                 ++  e id+  +  gd++ +    ++p d  +v+ + +  de ++ ge +pv+k   ++vf
  MMETSP1174-20130828|9991_1 325 ETVEEDIDATSVELGDILRVLPASAMPVDGVVVKGQSY-VDEKMINGEPVPVAKRpGDMVF 384
                 5567889************************9999987.8************995245566 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0019
   TIGR01523 307 aislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkm 369
                 ai++ +   p +l      ++ vg+ v ++  v+++  + le    vt +  dktgtlt g +
  MMETSP1174-20130828|9991_1 493 AIAVLVVACPCALGLATPTAVMVGTGVGARHGVLIKGGDVLEEACKVTLVMMDKTGTLTCGDL 555
                 677777777888877777788899999999*****************************9976 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 8.3e-07
   TIGR01523 579 sdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnl 636
                  d v ++++ + d  +  +  +v  ++  g++v m+tgd + taka+a ++gi p+ +
  MMETSP1174-20130828|9991_1 693 VDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISPSHV 750
                 577889999999999999999*********************************9865 PP

  == domain 4    score: 44.4 bits;  conditional E-value: 4.6e-15
   TIGR01523 671 viarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenv.......aevlllvvglvfrdevgksvfplsp 791
                 v+a+  pq k   +  l  + + va+ gdg+ndsp+l  a+vgia+g  g++va ea+++vl  d++ ++  a++  r +++ i+   +  l+ nv       + +l +v g+ +r ev    +  s 
  MMETSP1174-20130828|9991_1 750 VLAKVLPQGKADHVHWLQGQGHVVAVVGDGINDSPALAAADVGIAVGA-GAQVAVEAANMVLIRDDIFAVCVALDLARTVFQRIRLNYVWALAYNVfsvpaaaGAMLPFVHGFHMRPEVAAVAMACSS 876
                 899********************************************5.99**********99888888999************87666677777622222212334456666666666665555555 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.052        11      97     144 ..     329     371 ..     285     373 .. 0.85
   2 !    6.3   0.0    0.0016      0.35     352     382 ..     531     561 ..     522     572 .. 0.85
   3 !   15.1   0.4   3.6e-06   0.00078     615     667 ..     689     741 ..     668     746 .. 0.85
   4 !    9.2   1.9   0.00021     0.046     740     807 ..     743     807 ..     737     812 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.052
   TIGR01652  97 keikwkdlkVGdivkvkkdeeiPaDllllssseedGvcyveTknLDGE 144
                 ++i   +++ Gdi++v    ++P D ++++     G +yv+ k + GE
  MMETSP1174-20130828|9991_1 329 EDIDATSVELGDILRVLPASAMPVDGVVVK-----GQSYVDEKMINGE 371
                 56778899*****************99975.....6777777777766 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0016
   TIGR01652 352 nlneeLGqveyifSDKTGTLTqNkmefkkcs 382
                  + ee  +v  ++ DKTGTLT+ ++++  +s
  MMETSP1174-20130828|9991_1 531 DVLEEACKVTLVMMDKTGTLTCGDLSLTDVS 561
                 5678999***************999988765 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 3.6e-06
   TIGR01652 615 eliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigy 667
                   +  +  ++g  a+ D+++    +t+++L+  g+ +W++TGD   TA ++++
  MMETSP1174-20130828|9991_1 689 VFVAVDKVVVGVLALADQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVAL 741
                 4556677899**************************************99985 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00021
   TIGR01652 740 lalkckavlcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasD 807
                 l ++ + vl  +v P+ Ka+ v+ ++ +  +v+  +gdG ND   + +AdvG+ + G+  + Av a+ 
  MMETSP1174-20130828|9991_1 743 LGISPSHVL-AKVLPQGKADHVHWLQGQ-GHVVAVVGDGINDSPALAAADVGIAV-GAGAQVAVEAAN 807
                 555555555.48***********99887.799999*****************986.777777887776 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.032       6.9      15      57 ..     705     747 ..     701     753 .. 0.89
   2 !   16.8   0.3     4e-06   0.00087     207     244 ..     773     810 ..     766     822 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.032
   TIGR00099  15 keispetkealaklrekGikvvlaTGRsykevkeilkelgldp 57 
                 ++i+p++  ++a l++ G++v  +TG + + +k +  +lg+ p
  MMETSP1174-20130828|9991_1 705 DQIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISP 747
                 689*************************999999999999884 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 4e-06
   TIGR00099 207 viaiGDseNDieMleaagvgvamgnaneelkaladyvt 244
                 v+++GD+ ND + l aa+vg+a+g + + + ++a++v 
  MMETSP1174-20130828|9991_1 773 VAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMVL 810
                 789********************************996 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.8e-06   0.00039      22      90 ..      81     149 ..      71     151 .. 0.91
   2 ?   -0.9   0.6       2.5   5.4e+02       5      37 ..     485     517 ..     484     563 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.8e-06
   TIGR02052  22 tktvtlevPgmtcaacPitvktalkkvdGvekaevsfkqklavvtfddektnvkaltkatkdaGyPssv 90 
                 +  + l++ g++ca c   +++ l k +Gv  a v+ +++ a++      ++  +l k+ ++ GyP+ +
  MMETSP1174-20130828|9991_1  81 SSKIRLKLSGISCAVCIGKIEKFLIKDPGVLVATVNPATHVATIGLSKGHSSTDSLIKSLDNLGYPAKL 149
                 5668899***********************************************************976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 2.5
   TIGR02052   5 aallalaalvslpalaatktvtlevPgmtcaac 37 
                 aal+a+++++++ ++a + ++ l+ P+   +  
  MMETSP1174-20130828|9991_1 485 AALFAFMSAIAVLVVACPCALGLATPTAVMVGT 517
                 578899999999999999999999998766554 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-05    0.0032       1      64 [.      83     146 ..      83     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-05
   TIGR00003   1 kktlqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvsaeeIkeAildaGye 64 
                 k+ l+  g+sC  C+ kiEkf  +  GV    v+   + + +  ++ + s + + + ++++Gy 
  MMETSP1174-20130828|9991_1  83 KIRLKLSGISCAVCIGKIEKFLIKDPGVLVATVNPATHVATIGLSKGHSSTDSLIKSLDNLGYP 146
                 6789999***************************999999999999999999999999999996 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.5   1.8e+03      68      95 ..     301     328 ..     298     329 .. 0.80
   2 ?   -0.6   0.0      0.81   1.8e+02      90     125 ..     711     746 ..     701     755 .. 0.87
   3 !   14.5   0.5     2e-05    0.0044     171     212 ..     773     815 ..     764     822 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 8.5
   TIGR00338  68 llkglpvellkkveeklelteGveelvk 95 
                 +l  ++   + +++++ +  +Gv+e+v+
  MMETSP1174-20130828|9991_1 301 KLAAMQPARALRIRKRTRSSDGVQETVE 328
                 566667777889999999999***9997 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.81
   TIGR00338  90 veelvkkLkekgykvaviSGgFdlvaeklkekLgld 125
                 +  +v +Lk  g++v ++ G   + a+ ++ +Lg+ 
  MMETSP1174-20130828|9991_1 711 AYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGIS 746
                 667999******************999999999985 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 2e-05
   TIGR00338 171 tvavGDGanDlsmikaAglgiafnakpvlk.ekadiviekkdl 212
                 + +vGDG nD ++++aA++gia  a   +  e+a++v+ + d+
  MMETSP1174-20130828|9991_1 773 VAVVGDGINDSPALAAADVGIAVGAGAQVAvEAANMVLIRDDI 815
                 4579*******************99876661445555555555 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0053       1.1      18      61 ..     706     749 ..     687     753 .. 0.84
   2 !    7.8   0.2    0.0026      0.57     165     202 ..     772     809 ..     763     814 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0053
   TIGR01487  18 lislraieairklekkGikvvlvtGnevkfvealavligvsgav 61 
                  i++ a   +  l+  G++v +vtG     ++a+a  +g+s + 
  MMETSP1174-20130828|9991_1 706 QIKPTAYTTVASLKAIGLEVWMVTGDNASTAKAVALQLGISPSH 749
                 69999*******************************99998655 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0026
   TIGR01487 165 evaaiGDsenDldlFrvagfkvavanAddelKeiaDlv 202
                  va++GD+ nD ++   a+ ++av+   +   e+a +v
  MMETSP1174-20130828|9991_1 772 VVAVVGDGINDSPALAAADVGIAVGAGAQVAVEAANMV 809
                 589*********************99888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.38u 0.19s 00:00:01.56 Elapsed: 00:00:01.12
# Mc/sec: 1127.16
//
Query:       MMETSP1174-20130828|9996_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-29   98.8   0.0    7.1e-29   98.5   0.0    1.2  1  TIGR00093 TIGR00093: pseudouridine synthase
  ------ inclusion threshold ------
      0.012   12.7   0.0      0.018   12.1   0.0    1.3  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   3.5e-32   7.1e-29      19     160 ..      37     218 ..      12     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 3.5e-32
   TIGR00093  19 vkdllekl.rgkklaavGRLDrdseGlllltddgelqhrlthpeke....vektYlvqvegsvtdedlealrkGvkledektkpaklklikepel...................................ktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewreLt 160
                 + ++l k+  g+ + ++GRLD+dseGllllt+d  l +rl+hp k     vek Y v+ +  v    le+lr  v+++ e  ++ak+k  ++  +                                     +lrv+l eG+nrq+r+++   g++v+ L+Rv +g v legL++G+ ++Lt
  MMETSP1174-20130828|9996_1  37 LAETLAKAtGGRAVQTIGRLDKDSEGLLLLTSDMPLINRLLHPGKGvgspVEKVYHVRTNRRVPPRILERLRTSVSISTEDSRNAKAKARAGGGDdedssrceklvpgkvgpsghhtlpcvvdrlvlgdqRARLRVVLREGKNRQIRKMLGGQGYRVVALTRVGFGPVALEGLSPGQAKQLT 218
                 556677754788899****************************87522227***************************99999999999888777789******************************9555***********************************************998 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-06     0.018      27      63 ..      33      69 ..      19      99 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.7e-06
   TIGR01621 27 getglleevakqlgvekvylvhrldkvtsGilllaln 63
                ++  l+e++ak +g   v  + rldk + G+lll+ +
  MMETSP1174-20130828|9996_1 33 DNPSLAETLAKATGGRAVQTIGRLDKDSEGLLLLTSD 69
                46689****************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 873.98
//
Query:       MMETSP1174-20130828|9997_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-34  117.2   0.0      2e-34  116.9   0.0    1.0  1  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0024   15.6   0.0     0.0036   15.1   0.0    1.2  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.021   12.3   0.0    1.3  1  TIGR00235 udk: uridine kinase
      0.022   12.2   0.1      0.037   11.5   0.0    1.4  1  TIGR01360 aden_kin_iso1: adenylate kinase


Domain annotation for each model (and alignments):
>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   1.9e-37     2e-34       1     162 [.      36     206 ..      36     213 .. 0.91

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 1.9e-37
   TIGR00152   1 iigltGgigsGKstvakilkdkyklpvidADkiarqvvekgkpayekivkhFgaeilnedgeldrkkLgelVFndee...elkkLesllhPlireelkkklaqlqkk.....lalvlldvpLlfenkleklvdkvivvevskelqlerlmkrd.elseeevkkllksqmdl 162
                 +igl+Ggi+sGKstv ++++++++   i AD+++++++  + + ++++v+ Fg++i++++g +drk Lg  VF+ ++   e+ kL++++ P +re++  ++ +l +         ++++++Ll+e+   +lvd+++ v+ +++   erlm r+ +lseee+  +l++q+++
  MMETSP1174-20130828|9997_1  36 VIGLIGGIASGKSTVCDMMTSRFGAVSISADQVGHEMYRCDGDCFQELVNVFGEDIIDSHGFIDRKMLGLHVFSAKDssaERDKLNAIMWPRMREAIATQIRHLVESgatetATCIVVEAALLIEAGWADLVDEIWLVTTDDASAFERLMVRNpDLSEEEALGRLAAQAQQ 206
                 7************************************************************************9875344899********99999998887754332111256788999************************************************954 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-06    0.0036       3      50 ..      38      85 ..      36     103 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.5e-06
   TIGR01359  3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelie 50
                 ++Gg  sGk t C+ ++++f+ v +sa ++  e  + +g+ ++el++
  MMETSP1174-20130828|9997_1 38 GLIGGIASGKSTVCDMMTSRFGAVSISADQVGHEMYRCDGDCFQELVN 85
                578*************************99999888888988888875 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.021       5      34 ..      33      62 ..      28      78 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
   TIGR00235  5 ktiiigiaGasgsGkttvaekivellkkek 34
                + ++ig+ G+ +sGk+tv +++++ ++  +
  MMETSP1174-20130828|9997_1 33 NPLVIGLIGGIASGKSTVCDMMTSRFGAVS 62
                4489******************99988654 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.6e-05     0.037       5      40 ..      36      71 ..      32      99 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.6e-05
   TIGR01360  5 iifivGGpGsGkGtqcekivekyGfthlssGdllre 40
                +i ++GG  sGk t c+ +  ++G   +s+ ++  e
  MMETSP1174-20130828|9997_1 36 VIGLIGGIASGKSTVCDMMTSRFGAVSISADQVGHE 71
                6779*********************99998766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 727.63
//
Query:       MMETSP1174-20130828|9999_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 231.87
//
Query:       MMETSP1174-20130828|10000_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 169.22
//
Query:       MMETSP1174-20130828|10004_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    4.5  11.3        1.1    4.6   7.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.8   0.00027       1.1     944     996 ..      39      91 .]       1      91 [] 0.50

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00027
    TIGR00927 944 etgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeee 996
                  + g         + a  d + v  e + dG   e+++e++++ee   eeeeee
  MMETSP1174-20130828|10004_1  39 DAGVMRFVKYVSQAAPSDRRDVAAEYEFDGIGGEDDDEDDDDEEGSSEEEEEE 91 
                  44445555555566778888888888888766555555544434333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|10006_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 707.61
//
Query:       MMETSP1174-20130828|10005_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1233.69
//
Query:       MMETSP1174-20130828|10013_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   25.1   0.9    2.6e-06   24.9   0.6    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.9e-05   21.8   1.4    2.2e-05   21.7   1.0    1.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    0.00018   18.8   2.5    0.00021   18.6   1.7    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    0.00081   15.7   0.9    0.00088   15.6   0.6    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
     0.0018   15.8   0.6      0.002   15.7   0.4    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.6   3.2e-09   2.6e-06       2      77 ..      15      93 ..      14      95 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.2e-09
    TIGR01832  2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqe...kvealGrkflslkadladeeaakalvdeavee 77
                 +l Gkv++ tGa+  +    +++la+a a ++ v  s  + t +    v+a+G+++++ ++dl+++++++a  ++++++
  MMETSP1174-20130828|10013_1 15 DLTGKVIVYTGADGNIASQTTLALAKANATLMLVCYSVDKCTVAasiIVNATGARVETEQIDLSSQASIRATAARIIQR 93
                 799****************9****999999876665555544431225899****************999888777765 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   1.0   2.7e-08   2.2e-05       2      76 ..      19      94 ..      18      95 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.7e-08
    TIGR01963  2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaak.eleeaggevlalkadvtkeeeiadlieavaaef 76
                 kv++ tGa + i  + + +la+a a+++++  + ++++ aa+  ++++g++v++ ++d++++++i+ + +++ ++f
  MMETSP1174-20130828|10013_1 19 KVIVYTGADGNIASQTTLALAKANATLMLVCYSVDKCTVAASiIVNATGARVETEQIDLSSQASIRATAARIIQRF 94
                 899******************************77777666516778899****************9999988876 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.7   2.5e-07   0.00021       2      73 ..      17      89 ..      16      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.5e-07
    TIGR03206  2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaai.rekggkaeavavditdrasvdaavaa 73
                  +kv++ tg  g i + + + +a+  a + ++  + + +   a+ i +++g + e+ ++d++++as+ a+ a 
  MMETSP1174-20130828|10013_1 17 TGKVIVYTGADGNIASQTTLALAKANATLMLVCYSVDKCTVAASIIvNATGARVETEQIDLSSQASIRATAAR 89
                 689*********************************99987777662467888999**********9987665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.6   1.1e-06   0.00088     411     490 ..      15      93 ..       6      95 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
    TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevala 490
                  +l+++v++ tG+ + i +++++ l++  a ++l+    ++    a  +v+  Ga ++ + ++d+ ++ +++a+ a +   
  MMETSP1174-20130828|10013_1  15 DLTGKVIVYTGADGNIASQTTLALAKANATLMLVCYSVDKCTVAASIIVNATGA-RVETEQIDLSSQASIRATAARIIQR 93 
                  6899******************************99999998777777777775.677889*********9998877665 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   2.5e-06     0.002       3      74 ..      23      94 ..      20      95 .] 0.90

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.5e-06
    TIGR01830  3 vtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeel 74
                  tGa   i ++++++lak+ a++++   s ++ + +++  ++++g+++ + ++d+s++++++++ +++++++
  MMETSP1174-20130828|10013_1 23 YTGADGNIASQTTLALAKANATLMLVCYSVDKCTVAASIIVNATGARVETEQIDLSSQASIRATAARIIQRF 94
                 59********************999888888888888888999*********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 291.60
//
Query:       MMETSP1174-20130828|10014_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 208.40
//
Query:       MMETSP1174-20130828|10016_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|10018_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1095.15
//
Query:       MMETSP1174-20130828|10021_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    9.7  10.5        0.3    8.8   0.2    3.6  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.085   3.5e+02       5       8 ..       2       5 ..       1       8 [. 0.82
   2 ?    8.8   0.2   7.3e-05       0.3       4      15 ..      23      34 ..      23      34 .. 0.92
   3 ?    5.8   0.1   0.00064       2.6      20      26 .]      36      42 ..      35      42 .. 0.87
   4 ?    0.1   0.1     0.038   1.5e+02       4       8 ..      45      49 ..      44      51 .] 0.82

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.085
    TIGR02167 5 CssL 8
                CssL
  MMETSP1174-20130828|10021_1 2 CSSL 5
                9*99 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 7.3e-05
    TIGR02167  4 gCssLtsLDlSn 15
                 +CssL +LDlS+
  MMETSP1174-20130828|10021_1 23 SCSSLHALDLSG 34
                 6*********95 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.00064
    TIGR02167 20 nVTnMss 26
                 +VT+Ms+
  MMETSP1174-20130828|10021_1 36 QVTDMSG 42
                 8****96 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.038
    TIGR02167  4 gCssL 8 
                 +CssL
  MMETSP1174-20130828|10021_1 45 SCSSL 49
                 7***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 181.93
//
Query:       MMETSP1174-20130828|10022_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   24.9   0.0    1.8e-05   21.9   0.0    1.9  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    3.4e-05   21.2   0.0    8.2e-05   19.9   0.0    1.6  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     9e-09   1.8e-05      39     110 ..      43     120 ..      27     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 9e-09
    TIGR01934  39 keekvlDvatGtGdlaielakkae........akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdav 110
                  +++++l + +G   l i l               ++ vD+se++++  +k+++++   +ve+ ++d+++L ++d+sf ++
  MMETSP1174-20130828|10022_1  43 RGQRILHLGCGNSPLGIDLYTDGYgtagaasgGGIVNVDISESVIDQMAKRYEDTP--QVEWAVGDVTNLTYPDSSFGVL 120
                  7899999999999888888776555677888889*****************99874..59*****************765 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     4e-08   8.2e-05      52     116 ..      41     111 ..      29     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4e-08
    TIGR02021  52 slkGkkvlDAGCGtGllsiel.........AkrGaivkavDiseklvelarkraekedeaenveFevndlesle 116
                  +++G+++l  GCG   l i+l         A++G  ++ vDise+++++  kr+e++ +   ve++v+d+ +l+
  MMETSP1174-20130828|10022_1  41 LPRGQRILHLGCGNSPLGIDLytdgygtagAASGGGIVNVDISESVIDQMAKRYEDTPQ---VEWAVGDVTNLT 111
                  568***************999555555555566667899***************99985...999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 811.34
//
Query:       MMETSP1174-20130828|10019_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1064.71
//
Query:       MMETSP1174-20130828|10024_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00096   16.6   1.3     0.0011   16.3   0.9    1.1  1  TIGR02170 thyX: thymidylate synthase, flavin-dependent
  ------ inclusion threshold ------
      0.046   11.3   1.7      0.052   11.2   0.3    1.6  2  TIGR03349 IV_VI_DotU: type IV / VI secretion system protein, DotU family


Domain annotation for each model (and alignments):
>> TIGR02170  thyX: thymidylate synthase, flavin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.9   5.6e-07    0.0011      72     181 ..       2     118 ..       1     134 [. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.6e-07
    TIGR02170  72 laqlvRHRvasysvqSqRYvklrne...vpegeevvvqesvnksldekkeeqvekaaaeleekyraavelyrellea.....giakEdARivLPlaletelvvtinlraLlhfldlRa 181
                  ++q++RH +a  s+q qR+ +l n    +  ge++++ +  + + +++ ++ v+  + +l +++  + e+ r++        +   E A++ L+la +t++++   +r   +  + R+
  MMETSP1174-20130828|10024_1   2 TTQISRHGIAPQSKQGQRFLRLLNLvgkLQRGERKQARKPCE-NGNTELQDRVRRFERALTHDQVVSTEQMRAAALRlfggsNRMSERAKSQLTLAFQTHFMLLRAARLRTNATRIRL 118
                  78*******************975545566666666666666.6888899999999999999999999998877555788779999***************99888887777777776 PP

>> TIGR03349  IV_VI_DotU: type IV / VI secretion system protein, DotU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   2.5e-05     0.052       8      57 ..      21      74 ..      18      78 .. 0.85
   2 ?   -1.6   0.0       0.2   4.1e+02     128     162 ..      79     113 ..      79     134 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
    TIGR03349  8 spllslvtqLrktaasd..dv.eelreqlqeelrlfeerlraag.iseedieaa 57
                   ll+lv +L++++ ++  ++ e+ +++lq+ +r+fe++l++ + +s+e+++aa
  MMETSP1174-20130828|10024_1 21 LRLLNLVGKLQRGERKQarKPcENGNTELQDRVRRFERALTHDQvVSTEQMRAA 74
                 57899999999887666555679******************9998999999988 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.2
    TIGR03349 128 FeGkyrveedgreeleqlrsrlykllrsargkepe 162
                  F G  r++e+ + +l    ++ + llr ar  ++ 
  MMETSP1174-20130828|10024_1  79 FGGSNRMSERAKSQLTLAFQTHFMLLRAARLRTNA 113
                  55666666666666666666666666666655553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 664.07
//
Query:       MMETSP1174-20130828|10027_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   10.7   0.0       0.04   10.6   0.0    1.0  1  TIGR03372 putres_am_tran: putrescine aminotransferase


Domain annotation for each model (and alignments):
>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.6e-06      0.04      73     121 ..       9      59 ..       2      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.6e-06
    TIGR03372  73 qgqeyldc..lggygifnvghrnpvvvaavesqlakqplhsqelldplral 121
                    +eyld+  l    + ++g r   v++a ++ql k   h++ l d  ra+
  MMETSP1174-20130828|10027_1   9 AQDEYLDAqlLNLDAMEKIGVRMNEVISAQNEQLDKVHAHTDGLADETRAV 59 
                  4578888543455567789****************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|10023_1  [L=952]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:00.50
# Mc/sec: 2513.07
//
Query:       MMETSP1174-20130828|10026_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1164.80
//
Query:       MMETSP1174-20130828|10030_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.4   1.2      0.049   11.4   0.1    2.2  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.054   2.2e+02       9      26 ..     177     191 ..     171     210 .. 0.62
   2 ?   11.4   0.1   1.2e-05     0.049       6      42 ..     236     272 ..     235     286 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.054
    TIGR02209   9 lllvlvsaisvvsvqhqt 26 
                  +++v+vs    v +++ t
  MMETSP1174-20130828|10030_1 177 AVAVCVSL---VAIKTYT 191
                  33444433...3333333 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.2e-05
    TIGR02209   6 vlllllvlvsaisvvsvqhqtrqlnselqklqaeiek 42 
                  v+l+++++v+ + +++++ ++ ql sel+k+++ +++
  MMETSP1174-20130828|10030_1 236 VFLAIALVVVPLVFIMFAQDLLQLRSELKKAAQVETA 272
                  89****************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1088.02
//
Query:       MMETSP1174-20130828|10033_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 426.14
//
Query:       MMETSP1174-20130828|10035_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|10036_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|10038_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|10037_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|10040_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|10041_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 246.38
//
Query:       MMETSP1174-20130828|10043_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 913.22
//
Query:       MMETSP1174-20130828|10045_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 562.02
//
Query:       MMETSP1174-20130828|10048_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 537.73
//
Query:       MMETSP1174-20130828|10050_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 311.97
//
Query:       MMETSP1174-20130828|10052_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|10062_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|10059_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 754.22
//
Query:       MMETSP1174-20130828|10061_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.9   3.3      0.042   10.4   2.3    1.4  1  TIGR00398 metG: methionine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.3     1e-05     0.042     396     484 ..     172     259 ..     120     312 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
    TIGR00398 396 kyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakeeekekellavllelirvlsi 484
                  ++f + ++s+ke  ++de+ll ++++++e++ e   + ++ +a+   ++l++   +lid++ +  ++    + +e+++   ++++v+ +
  MMETSP1174-20130828|10061_1 172 EKFSAAIESKKEFVKKDEDLLVSMQQTQEQVRESSIEAQLAQAVTDKMSLITIERELIDKMDDCIRQLAA-ELDECRSRTKKMAEVMQT 259
                  56788999999999***********************************************998887776.677777666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.27s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1652.86
//
Query:       MMETSP1174-20130828|10063_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-92  305.9   0.0      9e-92  305.7   0.0    1.0  1  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    3.3e-41  139.3   0.0    4.4e-41  138.9   0.0    1.2  1  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2
    1.9e-26   90.6   0.0    8.8e-26   88.4   0.0    1.9  1  TIGR00272 DPH2: diphthamide biosynthesis protein 2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.7   0.0   6.6e-95     9e-92      51     320 .]       1     294 [.       1     294 [. 0.98

  Alignments for each domain:
  == domain 1    score: 305.7 bits;  conditional E-value: 6.6e-95
    TIGR00322  51 lgdttyGaCcvdevaakhlgadliiHyGhsclspi...............tsrlpvlyvfvkieidveklvealkeal..edkekkivllttvqyahaldeikkileeagyeeviipqlkprvlspgevlgctspalead.........eedkvllfigdgrfhllglalatpkpkvyvydpysskleeeeseaerllrrRyaaiekakdakkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfpeiDafVvvaCprlslddskefekpvltpyEleial 320
                  +gd+tyGaCcvd+++a+++g+d++ HyGhscl+p+                  l++ly+fv+i id+++lv ++++++  ++++ ++vl+ t+q+  a++e+   l+++g+++v +pq kp  ls ge+lgctsp+l+             ++vllf++dgrfhl+++++++p+ ++y+ydpy + +++e +++ r+++ Ry +i++a+ ak++G+++gtlg+qg++ +++++++ll+++g++++++l++e+ pakLa f ++Da+V+vaCprls+d++++f+kpvltpyE ++a+
  MMETSP1174-20130828|10063_1   1 MGDVTYGACCVDDLSARAMGCDYLLHYGHSCLVPVtaddavtttddvklhLRPLRTLYIFVEIGIDTDHLVACAEKNFgdDRSTIRLVLMGTIQFTGAVHEASISLKSKGFNHVEFPQAKP--LSAGETLGCTSPRLDYPvepstsggsGGRSVLLFVADGRFHLESAMIHNPELEAYRYDPYGKAITRERYDTPRMMALRYGHIQRAQHAKRWGVVLGTLGRQGNPAIVKHVRTLLTRHGRRHVVVLLSEVFPAKLALFRNVDAWVQVACPRLSIDWGEAFDKPVLTPYETMVAF 294
                  89*********************************************9988899*******************************************************************..***********998877888899999999*********************************************************************************************************************************************997 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   3.2e-44   4.4e-41      35     299 ..       2     297 ..       1     309 [. 0.83

  Alignments for each domain:
  == domain 1    score: 138.9 bits;  conditional E-value: 3.2e-44
    TIGR03682  35 gepvfGaCDladdevlel.vDlivhlGHspl...............envkseik......vifieaks...kedveeeveealeelkk.kkvglvttiqylkklekvaeiLeekgievvigkgdkrvaapgqvLGCnfsaaksv..........eadavlfvgtGkFhplglal.atkkeVvlvdplsgkvedieeeiekllrvrlakiskaldakkvgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnl.eldavvvtaCPRiaiDdaerfkkpvltpeEleivlgkr 299
                  g+ ++GaC + d +++ + +D ++h+GHs l               +             +++i ++    +++++  +e+++ +  +  ++ l+ tiq++  +++++  L++kg++ v   ++ +   +g  LGC+    +               ++lfv++G+Fh   + + +++ e + +dp+ + ++    ++ +++ +r+++i++a++ak++g++++t   Q  + +++++ +ll+++g++ ++vll e+ p kl  + ++da v +aCPR++iD  e f+kpvltp+E ++++g++
  MMETSP1174-20130828|10063_1   2 GDVTYGACCVDDLSARAMgCDYLLHYGHSCLvpvtaddavtttddvK------LhlrplrTLYIFVEIgidTDHLVACAEKNFGDDRStIRLVLMGTIQFTGAVHEASISLKSKGFNHVEF-PQAKPLSAGETLGCTSPRLDYPvepstsggsgGRSVLLFVADGRFHLESAMIhNPELEAYRYDPYGKAITRERYDTPRMMALRYGHIQRAQHAKRWGVVLGTLGRQGNPAIVKHVRTLLTRHGRRHVVVLLSEVFPAKLALFrNVDAWVQVACPRLSIDWGEAFDKPVLTPYETMVAFGEA 297
                  899***************************98888887776664432......033355555555554335555666677777664444899999*********************98755.5557999*******876665222333355544456899********88888878999************8888889******************************************************************66********************************99987 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   6.4e-29   8.8e-26      88     370 ..       2     297 ..       1     310 [. 0.72

  Alignments for each domain:
  == domain 1    score: 88.4 bits;  conditional E-value: 6.4e-29
    TIGR00272  88 aDtaYssCCvDevaaehvdaeavvhfGeaClsaisk................lpvvYvlGslpidldklekelqraadd..lsekivLladarfskeqekvlkvlkellygdrhlkesilpsvdvekaeek.fvilgrtfsvpkdvdlq.ekdlvliGqhdsedllsilllsyssvstvlqfdpisdkileesvsgssakLrrRyklveklrdagviGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvidskefyrPivtpfelelaLsee 370
                   D +Y++CCvD+ +a  + ++ + h+G++Cl +++                 l  +Y++ ++ id d+l+ + ++ + d     ++vL+   +f  + ++   +lk    g  h++        +++ e+   + +  +++v  + +      +vl+   d    l   + + ++++  +++dp  + i +e    + + +  Ry  +++++ a   G+v+gtlg +    +v+++r l+ + g+++ ++    v  +akla f+++d +v +aC+  s+   + f +P++tp+e  +a  e+
  MMETSP1174-20130828|10063_1   2 GDVTYGACCVDDLSARAMGCDYLLHYGHSCLVPVTAddavtttddvklhlrpLRTLYIFVEIGIDTDHLVACAEKNFGDdrSTIRLVLMGTIQFTGAVHEASISLK--SKGFNHVEFPQAK--PLSAGETLgCTSPRLDYPVEPSTSGGsGGRSVLLFVADGRFHLESAMIHNPELEA-YRYDPYGKAITRERYD-TPRMMALRYGHIQRAQHAKRWGVVLGTLGRQGNPAIVKHVRTLLTRHGRRHVVVLLSEVF-PAKLALFRNVDAWVQVACPRLSIDWGEAFDKPVLTPYETMVAFGEA 297
                  5999***************************987651111112222222222233566666666666666666666655223334455666666666666666666..4455565532222..2333333312333344555444443244444544444676666678888888875.79************66.8899999*****************************************************.6********************988788899************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.26s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 997.59
//
Query:       MMETSP1174-20130828|10064_1  [L=929]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-19   66.4   0.0    5.8e-19   65.1   0.0    1.5  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    7.4e-19   65.3   0.0    2.6e-14   50.2   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.2e-08   31.8   1.3    2.9e-08   30.4   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.6e-07   27.6   8.8    8.1e-05   19.3   0.0    2.9  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.2e-06   25.7   2.1    1.4e-05   22.3   0.0    2.8  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    1.2e-06   25.4   0.0    1.1e-05   22.2   0.0    2.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00029   17.8   0.1      0.014   12.2   0.0    2.4  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0004   16.6   4.8     0.0011   15.1   0.0    2.3  2  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   1.1e-21   5.8e-19      14     357 ..      34     362 ..      27     370 .. 0.80

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 1.1e-21
    TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnle.eaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleei..kkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvp 357
                  p++ Q++++  a  g++ + +a TG+GKT a  +p l +l+ +++ + g +++ ++P + La ++ r  +++++  +l+   +l  G  s + + +  +++pd ++ Tp  la  l +  ++ ++++++ vv DE   L++    ++l+  L r+    ++ +++  sAT+ ++  ++a++ l     ++ +l++ +++ ++++e  l      +  + +    al  v++e+     + t++F  tR  +E+l   L    ++  l+ al  g++d+e+R+   +++++ ++ +++ T     G+D   +d v++   p   + ++ R+GR++ +  + + i lv 
  MMETSP1174-20130828|10064_1  34 PTPVQRKTMPLALGGKDVVCMARTGSGKTAAFLVPLLESLK-EHRGTGGTRAIVLSPTRELALQTLRFSRQMAKYTDLRA--ALIVGGDSMEGQFEALANQPDFIIATPGRLAHHLEEV-HDFTLQGIQFVVFDEADRLFEMGFAHQLQQLLHRV---PENRQTLLFSATMPKVLiHFARAGL-----SDPQLIRLETDTRVPDELRLAF----FTVRSFDKPCALVFVMRELlcAPRELTVIFSATRHHCEMLRSLLAFSLPK--LKTALIYGTMDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPLLDNVVNYSFPPTPKLFVHRVGRTARQGRSGTAISLVD 362
                  57889************************776666666666.888889*******************9999988766654..444455566677889999*************998655.56789****************98888888666555...556677789***9765313333333.....3456788777777666655554....33334444444444555442256899*************99999888888..99****************************************************************998877777777765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   5.1e-17   2.6e-14      23     184 ..      20     184 ..      17     218 .. 0.83
   2 !   12.8   0.0   1.1e-05    0.0055     316     380 ..     294     358 ..     257     377 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 5.1e-17
    TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp...ratalylaPtkalaadqlravkelee.rdvraat.ydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs.yrGvfGshvalvlrrl 184
                  +dv + + + G + p   q ++  la  G++vv  + t sGk+ a+l+P+l++l+e++   +++a+ l+Pt+ la   lr  +++ + +d+raa    Gd+ + + e + ++ +++++ P  l + +   h      l+ +++vv de+ + +   f  ++ ++l+r+
  MMETSP1174-20130828|10064_1  20 KDVLRGILNMGYKVPTPVQRKTMPLALGGKDVVCMARTGSGKTAAFLVPLLESLKEHRgtgGTRAIVLSPTRELALQTLRFSRQMAKyTDLRAALiVGGDSMEGQFEALANQPDFIIATPGRLAHHLEEVHDF---TLQGIQFVVFDEADRlFEMGFAHQLQQLLHRV 184
                  678888889999999999**************************************96555899********************998899999862689**************************99999974...699**********8723444666677777775 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.1e-05
    TIGR03817 316 edrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv 380
                  e r+   +++++ +++ +  t+    G+di  ld vv   fP t   +  ++Gr+ r+g+   ++
  MMETSP1174-20130828|10064_1 294 EARKTNLDKFRKRQVTVLLVTDVAARGIDIPLLDNVVNYSFPPTPKLFVHRVGRTARQGRSGTAI 358
                  44555557889999999999***************************************987665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.6e-11   2.9e-08       9     336 ..      29     369 ..      19     394 .. 0.66
   2 ?   -4.1   1.2       1.6   8.1e+02     465     524 ..     861     873 ..     809     918 .. 0.48

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.6e-11
    TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL..ll..kgl....tvvisPLisLmkDqvdqLraa....GveaaalnstlsakeaqeilkalaagelklLYvaPerleqd.kflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaef..vssfdRe...nlafsvvkkenk...kkqlleylkkereksGiiYassRkkveelaeaLesk..giealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlall 336
                   Gy+   + q + +   l g+dv+ +  tG Gk   + vP L  l+   g+    ++v+sP   L        r++     ++aa +  + s++ +     ++ a++ +++  +P rl ++ +  + ++ + i+++ +Dea  + + G       ++l +l +r p++   + + at  +   +  ++   l+d++ +   + +  +    laf  v++ +k     +++++l     +  +i++++R++ e l + L     +++++  ++ ++++ R+ +++kF + +v+v++ t     Gid +    v+ +  P     +   +GR  R G+   ai l +++++a++
  MMETSP1174-20130828|10064_1  29 MGYKVPTPVQRKTMPLALGGKDVVCMARTGSGKTAAFLVPLLesLKehRGTggtrAIVLSPTRELALQTLRFSRQMakytDLRAALIVGGDSMEGQ----FEALANQPDFIIATPGRLAHHlEEVHDFTLQGIQFVVFDEADRLFEMGFA-----HQLQQLLHRVPENRqTLLFSATMPKVLIHFARAG--LSDPQLIrlETDTRVPdelRLAFFTVRSFDKpcaLVFVMRELLCAPRELTVIFSATRHHCEMLRSLLAFSlpKLKTALIYGTMDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPLLDNVVNYSFPPTPKLFVHRVGRTARQGRSGTAISLVDPEEMAYM 369
                  477777777777777777777777777777777777777766332212222111257777776665444433333300013444444444444433....33445566777777777765412233445556777777887777777743.....3555666666665545566666554444433333..33333330033322221113555555555441114567777777888999***************9975333899988999*************************************************************************9999876 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 1.6
    TIGR01389 465 liaeglleeddeeysalqleeavkkvlkeevevllrekkvvkkekkakkkalsvevdeaL 524
                  l                                                ++  +++++++
  MMETSP1174-20130828|10064_1 861 LK-----------------------------------------------TEAMIRKERKV 873
                  11...............................................11122222222 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   2.1e-05     0.011     266     395 ..      58     196 ..      53     210 .. 0.74
   2 !   19.3   0.0   1.6e-07   8.1e-05     476     526 ..     275     325 ..     255     332 .. 0.85
   3 ?   -2.3   2.0      0.56   2.9e+02      89     198 ..     791     912 ..     732     927 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
    TIGR00643 266 GsGKTvVavlallavies.....GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve......fkeLalviiDEQhr.F..G.veQRkkLrekgkekiaphvLvmsAT 395
                  GsGKT   ++ ll+ +++     G ++ ++ PT  LA Q ++  r++ +  +++ al++g    +    ++e++a  + ++++ T   l+ + e      ++ +++v+ DE  r F  G  +Q ++L ++  e  + ++L++sAT
  MMETSP1174-20130828|10064_1  58 GSGKTAAFLVPLLESLKEhrgtgGTRAIVLSPTRELALQTLRFSRQMAKYTDLRAALIVGGDSMEG---QFEALA-NQPDFIIATPGRLAHHLEevhdftLQGIQFVVFDEADRlFemGfAHQLQQLLHRVPE--NRQTLLFSAT 196
                  9****88888887777643444499************************99********9876655...556666.577999999765543322111222467889*****9995433434677777777764..5788888988 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.6e-07
    TIGR00643 476 lkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPn 526
                  l  ++pkl+ al+ g + ++ ++  l +Fr+++v +L+ T v   G+d+P 
  MMETSP1174-20130828|10064_1 275 LAFSLPKLKTALIYGTMDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPL 325
                  334559********************************************6 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.56
    TIGR00643  89 vygkvksskakallkasevksekaq....eielkkilpvYplteglkskklrklvkealdvlakl...ledelpke.lrekykllsleealkai......Hepetleekelarkrlifeellll 198
                  +y k k+  +k+++++++   + ++    ++  +  lpv +  +++  kk+++  ++a ++  ++   ++del++e ++ k + ++++  lk++      H+ ++++e+++a+k+l+  +++ l
  MMETSP1174-20130828|10064_1 791 IYDKWKKRTQKTVASEPNNMETADTdthhTLADRMPLPVKKNDRHV--KKVQEKADRAETQQGRNgkaVADELKTEaMIRKERKVKENLRLKNMskgqraHVVKKMKEEKRAKKNLVQSQAVPL 912
                  5666555555555544443333333111112223445554444443..3333333333333333223344444432144444444444444433222222777777777777777777666655 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.036        19       2      39 ..      51      91 ..      50     107 .. 0.74
   2 !   22.3   0.0   2.6e-08   1.4e-05     123     322 ..     157     354 ..     136     367 .. 0.75
   3 ?   -4.0   0.7       2.5   1.3e+03     259     279 ..     867     887 ..     861     897 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.036
    TIGR01587  2 lvieAPtGyGKteaallwalklikkqka...dkvifalPtr 39
                 +v  A tG+GKt a l+ +l+++k++      + i+  Ptr
  MMETSP1174-20130828|10064_1 51 VVCMARTGSGKTAAFLVPLLESLKEHRGtggTRAIVLSPTR 91
                 78899********9999888876665421225666666666 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.6e-08
    TIGR01587 123 ianSvliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlke..ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklke.kapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisv...dvlitelapidsLiQRlGRlaRygrk 322
                  i+   +++DE++ + e   a+ l  ll+++ +++ + ll sAt+pk l ++++    + +   l+++   ++  + + ++  +   ++    +  + e l + ++ ++i+   ++  e+   l   + p+++  L+ + + ++ r+      l +++k++  v+  T v+  ++Di      v ++   ++ + + R+GR aR gr 
  MMETSP1174-20130828|10064_1 157 IQ--FVVFDEADRLFEMGFAHqLQQLLHRVPENR-QTLLFSATMPKVLIHFARAGLSDPQLIRLETDTrvPDELRLAFFT--VRSFDKPCALVFVMRELLCAPRELTVIFSATRHHCEMLRSLLAfSLPKLKTALIYGTMDQEARKT----NLDKFRKRQVTVLLVTDVAARGIDIPLldnVVNYSFPPTPKLFVHRVGRTARQGRS 354
                  44..69******9999998884666666666665.6799***************99999999999888433333333333..33333344444445788899999999999998888887766542889999****99887776655....5***********************964310344555566677889*******8885 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 2.5
    TIGR01587 259 tekdrekkEaellkelkknek 279
                    k+r+ kE+  lk+++k + 
  MMETSP1174-20130828|10064_1 867 IRKERKVKENLRLKNMSKGQR 887
                  568899999999999999543 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.2e-08   1.1e-05       8     341 ..      30     372 ..      26     397 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.2e-08
    TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvs........dgltlvisPLisLmeDqv....lqLkasdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdR...pnlkye...ve..ekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkk..glaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                  g++   pvq +++  +l g+d++ +  tG Gk   + +p + s        +  ++v+sP + L    +    +  k +d+ a+l+ + +s e + e l      +   +  tP +++++ + ++++   +++ +++ Dea  + + G       ++l +L +++P+     L +   ++v     +   l++pq +    d      l++    v+  +k   +++ +++++  + +  + +i+  +r+++e + + L      l++a  +  ++++ark+   kf + ++ v++ t     Gi+ p +  v+ ys p     +   +GR  R g   +++ + +p+++a++  l
  MMETSP1174-20130828|10064_1  30 GYKVPTPVQRKTMPLALGGKDVVCMARTGSGKTAAFLVPLLESlkehrgtgGTRAIVLSPTRELALQTLrfsrQMAKYTDLRAALIVGGDSMEGQFEAL----ANQPDFIIATPGRLAHHLEEVHDF-TLQGIQFVVFDEADRLFEMGFA-----HQLQQLLHRVPENRQTLLFSATMPKVLIHFARA-GLSDPQLIRLETDTrvpDELRLAfftVRsfDKPCALVFVMRELLC-APRELT-VIFSATRHHCEMLRSLLAFSlpKLKTALIYGTMDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPLLDNVVNYSFPPTPKLFVHRVGRTARQGRSGTAISLVDPEEMAYMTDL 372
                  6777789******************************998865222222112246999**999976554222133455677777777777777444333....344556777888888886666665.78899999********999954.....356666777776655444444444554444433.445555443333321212343330002211233355555666666.444444.9**********998877543227888888999********************99998889*********************************************999987765 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.019       9.9      24      71 ..      47      98 ..      41     118 .. 0.79
   2 !   12.2   0.0   2.8e-05     0.014     323     386 ..     291     354 ..     265     373 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.019
    TIGR04095 24 ngrGilkma.tGtGktltaLalvskl...aekikslvvvvvvPykhLveqWa 71
                 +g+ ++ ma tG+Gkt   L+   +    ++ ++    +v+ P ++L+ q  
  MMETSP1174-20130828|10064_1 47 GGKDVVCMArTGSGKTAAFLVPLLESlkeHRGTGGTRAIVLSPTRELALQTL 98
                 57888899889*****99998655543445556788999999*999998854 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.8e-05
    TIGR04095 323 eskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspG 386
                   ++e R++ l +f ++++ +l+       G+D+P + + +  +    P+ F+ R GR  R+   
  MMETSP1174-20130828|10064_1 291 MDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPLLDNVVNYSFPPTPKLFVHRVGRTARQGRS 354
                  578899999*************************************************998654 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-06    0.0011     681     728 ..     278     325 ..     256     331 .. 0.89
   2 ?    0.2   2.5     0.074        38     145     261 ..     787     902 ..     680     922 .. 0.45

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.2e-06
    TIGR00580 681 lvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipn 728
                    P+++ a++ g m++e  ++ + +F k+++ vL+ T +   Gidip 
  MMETSP1174-20130828|10064_1 278 SLPKLKTALIYGTMDQEARKTNLDKFRKRQVTVLLVTDVAARGIDIPL 325
                  47********************************************95 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.074
    TIGR00580 145 aaeelereleefleaaleakklisaerlsleveelvleakalslsevelesalslkaseaieaaqeaeraelaeilalkeellralkagfkvvllaesesqaerlksllkesdiaak 261
                   a e+ +++++ ++++++ + +   e +++++++ +++   l +++ +++ ++  ++++++e++q  + +++a+ l+++  + +  k + ++ l   s++q+ ++++ +ke + a k
  MMETSP1174-20130828|10064_1 787 VAGEIYDKWKKRTQKTVASEPNN-METADTDTHHTLADRMPLPVKKNDRHVKKVQEKADRAETQQGRNGKAVADELKTEAMIRKERKVKENLRLKNMSKGQRAHVVKKMKEEKRAKK 902
                  22222222222222222222111.223334444444333222222222222111111112222221111122222222221222222222222222223333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.36s 00:00:01.01 Elapsed: 00:00:00.56
# Mc/sec: 2151.19
//
Query:       MMETSP1174-20130828|10070_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|10074_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|10072_1  [L=932]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.12s 00:00:00.68 Elapsed: 00:00:00.67
# Mc/sec: 1836.03
//
Query:       MMETSP1174-20130828|10079_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|10076_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1393.22
//
Query:       MMETSP1174-20130828|10081_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 588.29
//
Query:       MMETSP1174-20130828|10086_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   12.7   0.0     0.0078   12.7   0.0    1.0  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.9e-06    0.0078     396     441 ..      38      83 ..      13      94 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-06
    TIGR01931 396 ddevhltvgvvkkea.egrarlGgasgflaerlkeddtvkvyveene 441
                   + v l v+ vk+++  gr+r G +s++lae    +++v+v+v++ +
  MMETSP1174-20130828|10086_1  38 IHPVELCVALVKYTTpYGRKREGLCSNWLAE-RGCGEKVPVWVNPGS 83 
                  456889******98736**************.6899*******9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 545.17
//
Query:       MMETSP1174-20130828|10085_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   22.2  10.7    7.1e-06   21.8   7.4    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00049   17.2   0.3       0.49    7.4   0.0    2.5  2  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
  ------ inclusion threshold ------
      0.021   11.9   1.6        0.9    6.5   0.1    2.7  2  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   7.4   5.2e-09   7.1e-06     239     474 ..      11     250 ..       2     298 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.2e-09
    TIGR02168 239 eeleele.eelkeaeeeleeleaelkeleee....leelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleel...eeeleeleeelerleealeeleeelee 474
                  e+l+e++ e ++e+e +++  ++++++l+ +    + e+r+++ e+e+++ +++++++ l+++++  ++++ ++++ ++q  +  +e  +q++++  ++ + + +++++ee++e+l    e ++ +       + + +s  ee+ + +e+l  e+  +e++++ +++ ++ l+ +le++++ ++++++ +e+l+  +e++   ++++++++ +    e ++e+l+e+ e++ +++   e +++ 
  MMETSP1174-20130828|10085_1  11 EQLKEASeEVMQEMEGRINGVREDVTMLDGDsfvgMVEFRAKVVEVEADMGDIRNAVKLLSQKVEYAKERLGVYERAQKQ-VAAAAEFAAQMKKSADSEMCGQYDTEKIEEQTERLPSHAEVEKHRSILTDLRAGDGKSLREEQFTGIENLMMELTGAENEIDVAMEAMKALSIKLEHSKKCHSNFNKAKEKLDGLQEKVGGLMEKTKNDCCTAwdiEGMEEQLKEASEEVMQEM---EGRING 250
                  44444330334566666666666666666542322578999999999999999999999999999999999999888765.556677778999999999999999*****9999995555555554444446778899999*****************************************99999999999888887778888888777654111444444444444444443...334444 PP

>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00039      0.53     160     195 ..      19      52 ..      11      64 .. 0.77
   2 !    7.4   0.0   0.00036      0.49     160     195 ..     239     272 ..     228     284 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00039
    TIGR01508 160 eirvyiaPkliGGrdaptlvdGegfvaeespklelk 195
                  e+   +  ++ G r+ +t+ dG++fv+  +++++ k
  MMETSP1174-20130828|10085_1  19 EVMQEMEGRINGVREDVTMLDGDSFVG--MVEFRAK 52 
                  55566677999***************9..5555544 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00036
    TIGR01508 160 eirvyiaPkliGGrdaptlvdGegfvaeespklelk 195
                  e+   +  ++ G r+ +t+ dG++fv+  +++++ k
  MMETSP1174-20130828|10085_1 239 EVMQEMEGRINGVREDVTMLDGDSFVG--MVEFRAK 272
                  56666778999***************9..5555544 PP

>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0048       6.5     105     147 ..      10      52 ..       3      78 .. 0.84
   2 ?    6.5   0.1   0.00066       0.9      87     145 ..     212     270 ..     207     293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0048
    TIGR00417 105 DekvielskkylpklsgalddervdlkidDGvkflrdtekkfD 147
                  +e+  e+s + +++++g+++  r d+++ DG +f+  +e +  
  MMETSP1174-20130828|10085_1  10 EEQLKEASEEVMQEMEGRINGVREDVTMLDGDSFVGMVEFRAK 52 
                  56777999**************************987765544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00066
    TIGR00417  87 lrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdtekk 145
                  l e +k ++    ++  ++e+  e+s + +++++g+++  r d+++ DG +f+  +e +
  MMETSP1174-20130828|10085_1 212 LMEKTKNDCCTAWDIEGMEEQLKEASEEVMQEMEGRINGVREDVTMLDGDSFVGMVEFR 270
                  56778888888888889999********************************9877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|10088_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|10092_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   21.9   0.0     0.0062   13.6   0.0    2.1  2  TIGR00546 lnt: apolipoprotein N-acyltransferase
    0.00016   18.9   0.0    0.00049   17.4   0.0    1.7  1  TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase
    0.00027   17.9   0.0    0.00036   17.4   0.0    1.2  1  TIGR04048 nitrile_sll0784: putative nitrilase, sll0784 family


Domain annotation for each model (and alignments):
>> TIGR00546  lnt: apolipoprotein N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.5e-06    0.0062     183     275 ..      34     142 ..      20     146 .. 0.84
   2 !    6.4   0.0   0.00067      0.91     302     330 ..     148     176 ..     143     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.5e-06
    TIGR00546 183 ileeltsltkqaaekkvdlvvwPEtalpfdleespqkl...................alkelkalvlskgiplliGapdaekkgqleyyNsvllldpggevvqrydKvkLVP 275
                  +l  +  +++ aa++ + l v+PE+    + + +  ++                   a+ +++ +++++  ++l ++    ++g   +  + +++d++g vv +y+K++L+P
  MMETSP1174-20130828|10092_1  34 NLLVYEDAITLAAAQGAKLMVFPEGYSLSPDQSE-IEPwisivgeapcdimdldsspAQIRISCAARKNRLTVLANIFVLLPNG--TTLMTDVVFDDNGTVVATYSKHHLFP 142
                  555677778888888999*******555554444.444699****9999999999998889*********************77..799999*******************9 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00067
    TIGR00546 302 fakGrg.vqvlklkggvklavlICYEsifp 330
                  f++G+  +++++l++ + ++ +ICYE i p
  MMETSP1174-20130828|10092_1 148 FSPGPYsPTLFPLED-FVFGLIICYEGIWP 176
                  666775267788888.**********9987 PP

>> TIGR03381  agmatine_aguB: N-carbamoylputrescine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-07   0.00049       9     156 ..      26     176 ..      22     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.6e-07
    TIGR03381   9 alsedveeniekaeklvreaaakGaqiillpelfeapyfckeqee..eyfela....kpveehplikrlqklakelevvlpvsffeka.gnalynslavidadGevlgvyrkshiPdgpgyeekfyfkpGdtGfkvwdtryakiGvgicWdqWfp 156
                  ++s+ v+ n+   e+++  aaa+Ga++++ pe ++      e e   +    a     +++++p+  r++  a++ ++++   +f    + ++  + +v+d +G+v+ +y k h+      +ek +f+pG     ++  +   +G+ ic++  +p
  MMETSP1174-20130828|10092_1  26 NCSSAVQCNLLVYEDAITLAAAQGAKLMVFPEGYSLSPDQSEIEPwiSIVGEApcdiMDLDSSPAQIRISCAARKNRLTVLANIFVLLpNGTTLMTDVVFDDNGTVVATYSKHHLF----PTEKLHFSPGPYSPTLFPLEDFVFGLIICYEGIWP 176
                  57889999************************98865544333331122333322224678999999********999999988876514566788899***************85....479**************************987666 PP

>> TIGR04048  nitrile_sll0784: putative nitrilase, sll0784 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-07   0.00036      26     125 ..      40     137 ..      28     204 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.6e-07
    TIGR04048  26 eaiaeaakkgvelivfpetfvpyypyfsfveppvl.mgkehlklyeeavvvpgpvtdavaeaarekelvvvlgvne.rdegslynaqllfdadgelvlkrrk 125
                  +ai+ aa++g++l+vfpe +    p  s +ep +  +g++   +++      +p+  +++ aar+++l+v+  +     +g+   ++++fd++g++v    k
  MMETSP1174-20130828|10092_1  40 DAITLAAAQGAKLMVFPEGY-SLSPDQSEIEPWISiVGEAPCDIMDLD---SSPAQIRISCAARKNRLTVLANIFVlLPNGTTLMTDVVFDDNGTVVATYSK 137
                  68999*************98.579********9862688888888865...46778899***********9998752689***************9976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 683.24
//
Query:       MMETSP1174-20130828|10090_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-131  437.1  21.3   1.6e-131  436.8  14.8    1.0  1  TIGR00836 amt: ammonium transporter
    2.6e-86  287.8  20.3    1.2e-85  285.6  14.1    1.7  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.8  14.8    8e-135  1.6e-131       1     403 [.      44     467 ..      44     469 .. 0.95

  Alignments for each domain:
  == domain 1    score: 436.8 bits;  conditional E-value: 8e-135
    TIGR00836   1 dtawllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafg.eeaetvngfiGtskfglkn..kvlk.esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.......klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.....eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang...laalaavnTtlaaaagaltallieylkegkptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss..llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehge 403
                  d+++ll+a ++Vf+mq+G+alLeaG++r++nv nil+knlld +++ l+++++Gy++a+g  ++   n fiG ++f+l+   + ++  s+ e+  ++ +f+fq++Faa++a+ivsgavaeR+k++ay+++s+ + ++vyp+v hwvw+ +G+l++       ++g +DFAGs+vVH++g+va++++++vl+pR gr      e+ ++  hn  l vlGt++LwfGW+gFN+GS+l  +a g   +a+ +a +Ttl+aaa+++t +l+  +k++ +++  ++ng+l+glv+ita+++vve+waa++iG+++ +lv+++ + l +k++iDDp++v++vHg++G+wG+i+vglfa+ k++++++   ++  ++ g  k l+ ql+ ++vi+++++++ ++++++l+k+   Rvs+++E++GlD +ehg 
  MMETSP1174-20130828|10090_1  44 DAFYLLFAGTIVFFMQAGFALLEAGSLRQRNVQNILFKNLLDPCFGALAFWSFGYGFAYGtYKQYGTNTFIGGQYFFLDTfsD-AStASDFETEDSYHSFFFQFAFAATTATIVSGAVAERCKIEAYIMYSIYICMFVYPVVVHWVWSSEGFLSAfsskpmnDIGCVDFAGSGVVHMCGAVAAFCGTYVLKPRAGRWlengeENPEFIAHNPVLFVLGTMILWFGWYGFNPGSTLgiTASGyahVAMKTATTTTLSAAASGITSCLLAKFKTKVWDLGETCNGVLSGLVGITAACSVVETWAAVLIGFIS-ALVYASGKYLLRKMRIDDPVNVIPVHGFCGAWGVIAVGLFASRKMMKTTYGLSEAglFYSGDVKMLGLQLLEVVVIFMWTMGTSMPFFMLLDKLNVFRVSQDDEEIGLDRSEHGS 467
                  89**********************************************************74456799************743.33467778888999*****************************************************99989999999**********************************99**99999******************************8855556669999**************************************************************.99999999************************************9966655544489999999**************************************************96 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.6  14.1   5.7e-89   1.2e-85       3     397 ..      43     466 ..      41     470 .. 0.87

  Alignments for each domain:
  == domain 1    score: 285.6 bits;  conditional E-value: 5.7e-89
    TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgda.lllegil..eafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll........selgfsdfaGsgivhlaGaaaalagvlllGarkGkygkdgevka.ipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllfgkadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvpltn...................ada.sfvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelG 397
                   d+f++l +g +v++m aGfa+leaG +r++n+ +il kn+   +  a+ ++ +gy  +y + + + +++++  + f+l++++ ++   +++e++ +y     fffq  f+at+++ivsGavaer k+ a++++++ ++ ++yPv  +w w++ G+l        +++g +dfaGsg+vh++Ga+aa++g  +l +r G++ ++ge ++ + + n  l  lGt+ilw+Gw+Gfn gs l ++  + a    k    t ++aaa  i++ llak   +  dl  + nG l+Glv ita  +  +++aa+liG+++ ++   +  ll k++iddpv  i+vhg++G +G+++v l                     +d+  +  ql+ vv+if++++ +s+  +++l+++   rvs+++e  Gld +e G
  MMETSP1174-20130828|10090_1  43 TDAFYLLFAGTIVFFMQAGFALLEAGSLRQRNVQNILFKNLLDPCFGALAFWSFGYGFAYGTYKqYGTNTFIggQYFFLDTFSDAST-ASDFETEDSY---HSFFFQFAFAATTATIVSGAVAERCKIEAYIMYSIYICMFVYPVVVHWVWSSeGFLsafsskpmNDIGCVDFAGSGVVHMCGAVAAFCGTYVLKPRAGRWLENGEENPeFIAHNPVLFVLGTMILWFGWYGFNPGSTLGITASGYAHVAMKTATTTTLSAAASGITSCLLAKFKTKVWDLGETCNGVLSGLVGITAACSVVETWAAVLIGFISALVYASGKYLLRKMRIDDPVNVIPVHGFCGAWGVIAVGLFAsrkmmkttyglseaglfysGDVkMLGLQLLEVVVIFMWTMGTSMPFFMLLDKLNVFRVSQDDEEIGLDRSEHG 466
                  699*********************************************************654414455555444444444444332.3333444333...35************************************************98888866666666789**************************************9984778888899**********************988877655555556666666667888899********************************************************************************9876677888889998777777644414567*******************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.63
# Mc/sec: 1047.53
//
Query:       MMETSP1174-20130828|10096_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-23   81.8   0.1    1.7e-23   81.4   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.3e-19   66.6   0.2    4.1e-19   66.3   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.024   12.6   0.1      0.062   11.3   0.0    1.6  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   1.2e-26   1.7e-23       2      73 ..      28      99 ..      27     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 1.2e-26
    TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghaglegg 73
                  Y+iLgv+k+A+++ + kAYr lak++HPDrn+g k+a++ f +i++Aye+L d+ekr+ +D++g++gl++ 
  MMETSP1174-20130828|10096_1 28 PYSILGVTKEAKKDAVIKAYRFLAKQWHPDRNRGVKDADAVFARIAQAYEILMDPEKREIFDRLGEDGLKRL 99
                 5******************************************************************99874 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1     3e-22   4.1e-19       3      75 ..      27     100 ..      25     106 .. 0.95

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 3e-22
    TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDred 75 
                  D y +Lg++++a ++ + ka+r Lak++hPDrn+   da+ +fa i  a+++L +P+kr+ +D+ G DG+ r +
  MMETSP1174-20130828|10096_1  27 DPYSILGVTKEAKKDAVIKAYRFLAKQWHPDRNRGvKDADAVFARIAQAYEILMDPEKREIFDRLGEDGLKRLG 100
                  78*********************************9*********************************98855 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.5e-05     0.062       7      53 ..      42      85 ..      38      88 .. 0.81
   2 ?   -2.6   0.0      0.82   1.1e+03      15      42 ..     225     254 ..     219     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.5e-05
    TIGR00714  7 aLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53
                 a+ k yr l kq+HPD  +  ++   a    + + qAy+ L dp kR
  MMETSP1174-20130828|10096_1 42 AVIKAYRFLAKQWHPDRNRGVKD---ADAVFARIAQAYEILMDPEKR 85
                 56688***********5555555...5666799***********888 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.82
    TIGR00714  15 lQkqyHPD..vsksaqeqaaalqqStelNq 42 
                  lQ +y PD  vs     ++  ++  +e N 
  MMETSP1174-20130828|10096_1 225 LQCAYLPDhhVSLFVDAKTFKVHGHSEYNA 254
                  899999997777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|10095_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1042.38
//
Query:       MMETSP1174-20130828|10098_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|10102_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.83    7.6   5.4        8.6    4.3   1.3    2.4  2  TIGR01898 cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6


Domain annotation for each model (and alignments):
>> TIGR01898  cas_TM1791_cmr6: CRISPR type III-B/RAMP module RAMP protein Cmr6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0026        11      48     112 ..     291     355 ..     280     358 .. 0.80
   2 ?    4.3   1.3    0.0021       8.6      34      99 ..     436     501 ..     435     503 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0026
    TIGR01898  48 eevlaeakdelknakkredekllaevfekkseeeelaeklfgtqekegevifldAiPiaeeldke 112
                  ++ l+e k+++ + +  e ek +a+++e++  eee+     ++++++g+v+  dA+ ++e  dk+
  MMETSP1174-20130828|10102_1 291 KQLLEEKKQKKPKSEMTEAEKYAASDVEESDLEEEEGGGGDSEEDEAGDVLGADAFTVPEYADKP 355
                  4556665577777778888888889998888888888888899999**********999988776 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0021
    TIGR01898  34 ipgsaiKGvlrsaleevlaeakdelknakkredeklla.evfekkseeeelaeklfgtqekegevif 99 
                  i g + KGv r+  e+  ++ k +++  kk+ +e++++ + +++  + +e ++++ g++   g  +f
  MMETSP1174-20130828|10102_1 436 IGGGENKGVGRNKKETKEEK-KARKQAIKKERQENRTQkRNLKDAYKADEAQQRVVGGKSGTGISTF 501
                  6678889**99998886666.5555556666666666635558999999999999999999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.62
# Mc/sec: 1072.94
//
Query:       MMETSP1174-20130828|10104_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 971.59
//
Query:       MMETSP1174-20130828|10109_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|10113_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 213.21
//
Query:       MMETSP1174-20130828|10112_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1205.27
//
Query:       MMETSP1174-20130828|10115_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|10116_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|10117_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|10119_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 577.82
//
Query:       MMETSP1174-20130828|10131_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1174-20130828|10129_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1125.38
//
Query:       MMETSP1174-20130828|10134_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 883.93
//
Query:       MMETSP1174-20130828|10137_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|10130_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1682.26
//
Query:       MMETSP1174-20130828|10136_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    4.5  14.8        1.6    4.1  10.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  10.3   0.00038       1.6     355     505 ..       3     154 ..       1     182 [. 0.53

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00038
    TIGR02169 355 klkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelr...klkeeleklekelselerelaeleaqakasee 505
                  +l + lk+ kee +  +++  +++k+++ l ++  e+++ +ek k e++     l+     +++++e+   + a ++++   +++  ++++e+ e+++    +++q +e +++ ++ l+     +++ ++ + + ++ +rel+++ +  + ++e
  MMETSP1174-20130828|10136_1   3 QLRSDLKAMKEEARLQKSKCGALAKSNKDLAAKEIEYERLIEKQKTEIDTQASALSGV--ASNEKTEDETSASAVVNQLMGPLKNALSAVTEKTEKVEILAAQMKQQQETVKDQSQPLSfnkPSEQTTRNHNGRTHKPNRELSNISTLLQDLQE 154
                  5666666666666666666666666666666666666666666666666666555544..3333334444444444444444444444444444444444444444444444444433211023445555555666666666555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.57
# Mc/sec: 744.15
//
Query:       MMETSP1174-20130828|10138_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   13.3   0.0       0.51    7.6   0.0    2.1  2  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0021       8.7      20      42 ..      71      93 ..      67     107 .. 0.83
   2 !    7.6   0.0   0.00012      0.51      90     139 ..     141     193 ..     130     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0021
    TIGR00068 20 htmlrvgdldksldfytevlGmk 42
                 h  + v +ld++ +fy  vlG +
  MMETSP1174-20130828|10138_1 71 HLAFPVHNLDAAKEFYGTVLGCS 93
                 667889***************87 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00012
    TIGR00068  90 iaiavddvykacervkakGgkvvrepgpvkg...gtkviafvkDPDGykiell 139
                  +a++ d+ +    r++a+G++++  p    +   g +   f kDP G  +e+ 
  MMETSP1174-20130828|10138_1 141 LALTLDQFHTLTARLEAHGVEFIIPPTLRFKgmpGEQWTCFFKDPSGNNLEFK 193
                  68999******************99975544033457899********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|10141_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|10143_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|10145_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.68
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|10147_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 569.02
//
Query:       MMETSP1174-20130828|10150_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.5   0.1     0.0041   14.5   0.1    1.0  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     1e-06    0.0041     277     315 .]       7      53 ..       2      53 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1e-06
    TIGR01289 277 ywswgkrq.......esfeqe.lseevsddekakklwelseklvgla 315
                  y s ++ +       e f+q  +s+e+  +++a++lwe s+++vgl+
  MMETSP1174-20130828|10150_1   7 YLSAASATskattraEGFDQAgISKEAEAEDQAEQLWERSAQVVGLS 53 
                  5544443334445559999854999**9*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|10151_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|10154_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 273.88
//
Query:       MMETSP1174-20130828|10155_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-41  138.5  20.2    9.8e-41  138.0  14.0    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    1.3e-06   25.9  27.0    2.7e-05   21.5  18.7    2.1  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0  14.0   4.8e-44   9.8e-41       3     294 ..      53     357 ..      52     366 .. 0.85

  Alignments for each domain:
  == domain 1    score: 138.0 bits;  conditional E-value: 4.8e-44
    TIGR00817   3 tgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllells.......wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk..................sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskv 294
                  +g+ ++ wy+  ++ n   k++l   + p++  ++++   +  ++l           +l   l+  k + +ll  ++i+    +v+  v+l  ++vSf ht+ka +p+fs+vls ++lg++f  t+ lsLl +v Gvala+ te  fn +gf+ a +s ++    n+  K++l                      +d+   + +i   +l l++p++ +ve ++l    f+          ++  ++++ +g++ l   +a  +l+ +sp+ +s+ N  KRvvvI+vS+l f++++s+l++ G+++++ G+flY++ 
  MMETSP1174-20130828|10155_1  53 IGVTIFFWYLCSIVGNNAGKSVLSQIPLPMTLCVIQFTLATFSVTLLnlasgrkSLAQLWSILQRAKYVGALLGSMGII---SNVSHRVALMYIPVSFAHTVKATQPLFSAVLSSILLGQSFSWTTVLSLLVVVAGVALAAFTEFQFNTIGFIAAEASAMAMSVANVSLKRVLHLSrnelpsgkssrksyscssHFDNRYPSMVINAFSLALVIPVWWFVEVPRLGLTTFTPL-------SAF--LVFLNTGTMTLQHFLALSILAAISPVSHSIVNSCKRVVVITVSVLYFGNPVSVLNAAGIVVTLSGIFLYERS 357
                  5778899999999999677*****************9988776555434445323334555555556666666666665...5777789999********************************************************************************997789***********999877888888888889999************99988555554.......334..556666666666689******************************************************985 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  18.7   1.3e-08   2.7e-05      18     262 ..      93     350 ..      80     352 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.3e-08
    TIGR00950  18 lyfavlrrlifallllLpllrlrnslkrllrl.lllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellq.........f.....tgfvvlliGa..llllpfalllgpnlqalpatslqwlallyLgligtl...layflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                  + +++l+ l+ +   l+ l+ +   l+r++ + +llg + + + +v+  +a  + +v++a  + +++Pl++++ls++l  + +++ ++l++++++aG v l   ++ +++++G++++ +s++++ +  v  kr+ + +  el+                +++ +++i a  l+l++  +++++ +  l  t+     +++L+++ t+   l  fl ++ l +++++  si++  + +v +++++l++g+ +s+++  g+++ l++
  MMETSP1174-20130828|10155_1  93 TFSVTLLNLASGRKSLAQLWSI---LQRAKYVgALLGSMGI-ISNVSHRVALMYIPVSFAHTVKATQPLFSAVLSSILLGQSFSWTTVLSLLVVVAG-VALAAFTEFQFNTIGFIAAEASAMAMSVANVSLKRVLHLSRNELPSgkssrksysCsshfdNRYPSMVINAfsLALVIPVWWFVEVPR-LGLTTFTP-LSAFLVFLNTGtmtLQHFLALSILAAISPVSHSIVNSCKRVVVITVSVLYFGNPVSVLNAAGIVVTLSG 350
                  5555666666666666666665...3333333134444444.5688889999*********************************************.66778899***********************999987655544443111111111111122567799999833456667888888884.44444333.366677766532238999999*********************************999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.55
# Mc/sec: 967.12
//
Query:       MMETSP1174-20130828|10158_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.64
# Mc/sec: 635.20
//
Query:       MMETSP1174-20130828|10161_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|10160_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.60
# Mc/sec: 895.33
//
Query:       MMETSP1174-20130828|10166_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-29   98.1   0.0    1.6e-28   97.4   0.0    1.3  1  TIGR00376 TIGR00376: putative DNA helicase


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   3.9e-32   1.6e-28     532     628 ..       5     117 ..       2     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 3.9e-32
    TIGR00376 532 igvisPYdaqvdllrkll...........eekk.......idiEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvk 628
                  + v++PY aq+dl+r+ l              +        ++ v +vDGFqGRE ev+++s vR++r g +GFL dlRR nvaltRar  l+++g+ + l++++ ++ liey+ 
  MMETSP1174-20130828|10166_1   5 VVVLTPYKAQIDLVRQALgrklenshqetR--EggsdsagQEVTVCTVDGFQGREAEVVVMSCVRTQRGGRIGFLSDLRRQNVALTRARHCLVLLGNARALREHEDWAPLIEYLG 117
                  5699***********999887755433220..122222225899********************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 771.09
//
Query:       MMETSP1174-20130828|10168_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.2   0.0    0.00018   18.8   0.0    1.1  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.5e-08   0.00018     166     269 ..     132     236 ..     126     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.5e-08
    TIGR03896 166 lsagtvlikegeavdaLYilLaGeaelsise..dgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLqaDvalaerfYrsiaslLsqr 269
                  l+ g++l +eg+   a+Y +  Ge+ +  ++   g   ++++   G  +Ge++++      +a  ka +  ++ +++ +++++ L   +++ e     i  +  qr
  MMETSP1174-20130828|10168_1 132 LVPGEILFNEGDGGAAMYFVSRGEITIFRKNyvSGDHVQITKIGSGGFFGEVAIVKQTVR-AAGAKAATFCEIYVLENTDMKKLLGRYPKFKETIAEHIELMTKQR 236
                  6789**********************987651156677889999************9999.8999********************999999998888888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 962.55
//
Query:       MMETSP1174-20130828|10169_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    8.9   7.9       0.16    9.3   0.4    2.8  2  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.1    0.0039        16     100     137 ..       2      39 ..       1     128 [. 0.86
   2 ?    9.3   0.4   3.8e-05      0.16       2      71 ..     220     294 ..     219     316 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0039
    TIGR01840 100 tGLSaGggetaVllatypdvfAgaAsnaglpygsasss 137
                  +G SaGg   +  ++ + +   g   + + pyg+as  
  MMETSP1174-20130828|10169_1   2 SGHSAGGSIASLHAIAFSNRVLGLGHFEAAPYGCASLY 39 
                  799****************99************99975 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 3.8e-05
    TIGR01840   2 ylyvPasltgkra...lvlalHGCgQ......tasasvidkgwkaaAdkYgfvvvaPevtssnssnkCwdwfetehrar 71 
                  ++yvP+s +g++    + +  HGCg       t  + v  +g++  A+   ++v++P+  +      Cw+w  ++    
  MMETSP1174-20130828|10169_1 220 FAYVPSSCKGDARscrVHVQYHGCGCsqmellTGMTFVKHTGFNGWAEANAIMVLYPQSWGI----SCWNWDGEQAYDP 294
                  89*****77765322256789*99861133334455666777***************87654....6****87766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.73
# Mc/sec: 578.58
//
Query:       MMETSP1174-20130828|10173_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 620.84
//
Query:       MMETSP1174-20130828|10174_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|10172_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.60
# Mc/sec: 994.32
//
Query:       MMETSP1174-20130828|10175_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|10176_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.4   0.0      0.023   11.8   0.0    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.5e-06     0.023      24      65 ..       2      40 ..       1      49 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.5e-06
    TIGR00601 24 kelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykik 65
                  ++Ke i   +    ++++qq+L y Gk L+D k + +y+i 
  MMETSP1174-20130828|10176_1  2 EAIKEMIWRIER---IPISQQRLRYGGKQLEDGKGLDDYHIL 40
                 567777766666...9************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.70
# Mc/sec: 384.65
//
Query:       MMETSP1174-20130828|10180_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-33  113.2   1.4    3.1e-33  113.1   1.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    1.5e-20   71.6   0.3    1.7e-20   71.4   0.2    1.0  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    1.3e-11   42.6   0.1    1.3e-11   42.6   0.1    1.1  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    2.9e-09   34.3   0.0    3.1e-09   34.2   0.0    1.2  1  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
    4.4e-07   27.1   0.1    4.4e-07   27.1   0.0    1.1  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   1.0   3.8e-36   3.1e-33       4     103 ..       5     104 ..       2     105 .] 0.96

  Alignments for each domain:
  == domain 1    score: 113.1 bits;  conditional E-value: 3.8e-36
    TIGR01520   4 klktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvv 103
                   +++gv++g+++ klfe+a+e  +aiPa+n+vss++ na++eaa++aksp+ilq+s+gg +f++GkGv    +  as aGa+a a +vr +a+ yg+pvv
  MMETSP1174-20130828|10180_1   5 SIPPGVVTGKNLLKLFEIARESGYAIPAVNCVSSSSCNAVMEAAAKAKSPVILQISQGGGQFYCGKGVTLVDKLKASAAGAVAMAYHVRAVAKFYGIPVV 104
                  5789****************************************************************99777777***********************8 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.2     2e-23   1.7e-20       2      81 ..      12     104 ..      11     105 .] 0.96

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 2e-23
    TIGR00167   2 alvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG.............leaiaalvkalveaekytvPvv 81 
                  +++++ +l+e a+e gyaipa+N+v+++s +av+eaa++aksPvi+q+s+g+ +++ G              +a+a + ++++ a+ y++Pvv
  MMETSP1174-20130828|10180_1  12 TGKNLLKLFEIARESGYAIPAVNCVSSSSCNAVMEAAAKAKSPVILQISQGGGQFYCGkgvtlvdklkasaAGAVAMAYHVRAVAKFYGIPVV 104
                  6788999***************************************************************99999999**************8 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   1.6e-14   1.3e-11       5      80 ..      17      91 ..      10     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.6e-14
    TIGR01859  5 kellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlggikvvvalvkalieklsi.vPvalh 80
                  +l+e a++ +Ya++a+n       +a++eaa ++ksPvi+q+s+g  ++  g  + v+lv +l  +++  v +a h
  MMETSP1174-20130828|10180_1 17 LKLFEIARESGYAIPAVNCVSSSSCNAVMEAAAKAKSPVILQISQGGGQFYCG--KGVTLVDKLKASAAGaVAMAYH 91
                 467899***************************************99987764..4456666666665544666666 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   3.8e-12   3.1e-09       5      57 ..      17      70 ..      14     102 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 3.8e-12
    TIGR01521  5 rqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgars.yage 57
                  +l++ a e gy +pa n        a+meaa k+ spvilq+s+g  + y g+
  MMETSP1174-20130828|10180_1 17 LKLFEIARESGYAIPAVNCVSSSSCNAVMEAAAKAKSPVILQISQGGGQfYCGK 70
                 5788999*************************************9875515554 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.4e-10   4.4e-07       7      54 ..      19      66 ..      10     101 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.4e-10
    TIGR01858  7 llkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfky 54
                 l++ a+++Gya+pa n     + ++v+e+aa+ kspvil  + g  ++
  MMETSP1174-20130828|10180_1 19 LFEIARESGYAIPAVNCVSSSSCNAVMEAAAKAKSPVILQISQGGGQF 66
                 4457999*******************************9876655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|10179_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:01.12
# Mc/sec: 1080.66
//
Query:       MMETSP1174-20130828|10181_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    3.1  17.6        4.7    2.5  12.2    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  12.2    0.0011       4.7     898    1016 ..     399     524 ..     358     528 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0011
    TIGR00927  898 aeedgevk.Gdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgea..kedekGvdgeggsd...GGdseeeeeeeeeeeeeeeeeeeeeeeeeeneeplsle.wpetrq 1016
                   ++ ++  k  +++++ k e+eee++++++++++++++ i +d+   +   +q+ + + ++e   +    G + e+ ++   G  se +    eee+ eeee  ++++++++ne pl+    p +r+
  MMETSP1174-20130828|10181_1  399 SKANAASKkKKKKKNAKNENEEESNNNNDNNESSNSNPIMADNRFGGLFTNQDFEIDPNSEEfgQRYPSGWEKEKLTEtgpGPLSESDTGSSEEEDGEEEESSDDDDDDDDNEMPLAHApTPSSRR 524 
                   444444330334445666777777777777777788888888888888788887777666541144557887775544100556777777777777788888888888899999998542566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.67
# Mc/sec: 1260.79
//
Query:       MMETSP1174-20130828|10185_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1174-20130828|10187_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|10189_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 344.11
//
Query:       MMETSP1174-20130828|10186_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.0       0.92    6.3   0.0    2.1  2  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0013       5.2     197     237 ..     180     222 ..     174     229 .. 0.80
   2 ?    6.3   0.0   0.00022      0.92     311     332 ..     360     381 ..     346     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0013
    TIGR01174 197 GvvlidiGggttdiavyteg..sirytkvlpiggnnvtkDlak 237
                   +v++d+G   t+++  + g   +r tk l+igg+ +t+ l +
  MMETSP1174-20130828|10186_1 180 ACVVVDLGFSATNVTPCIMGvpVPRATKRLNIGGKLLTNLLKE 222
                  589**********9866666116799************97655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00022
    TIGR01174 311 keelaagivltGGaaqlkgike 332
                  +  l a+++ltGG+a l g+k+
  MMETSP1174-20130828|10186_1 360 QAPLYANVILTGGTACLPGLKD 381
                  667899**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1767.19
//
Query:       MMETSP1174-20130828|10192_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 303.22
//
Query:       MMETSP1174-20130828|10191_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-08   28.3   4.2     0.0029   13.5   0.7    3.7  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   1.9e-05      0.08     130     160 ..      95     125 ..      86     129 .. 0.90
   2 !    4.3   0.0   0.00043       1.8     129     154 ..     127     152 ..     123     156 .. 0.87
   3 !   13.5   0.7   7.1e-07    0.0029     130     156 ..     196     222 ..     160     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 1.9e-05
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                  +g  +l++A  + n e+v  Ll++ga v a+
  MMETSP1174-20130828|10191_1  95 HGWCPLHVACKNGNKELVAHLLANGAYVTAK 125
                  7899***********************9976 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.00043
    TIGR00870 129 tkgitalilAihkqnyeivklLlekg 154
                   +g  a+++A+h   + +v+ Llek 
  MMETSP1174-20130828|10191_1 127 RHGWRAIHIAAHAGAVSCVQQLLEKS 152
                  57888******************985 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 7.1e-07
    TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                   g+t+l++A+++    ivk+Ll+ ga+
  MMETSP1174-20130828|10191_1 196 LGQTPLHIAAMEGHAHIVKALLAAGAN 222
                  59***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1214.98
//
Query:       MMETSP1174-20130828|10194_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       611  (0.148952); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 243.84
//
Query:       MMETSP1174-20130828|10198_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-09   32.1   0.1    2.1e-08   31.0   0.0    1.5  2  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.4   0.0     0.009        37       8      67 ..      30      87 ..      25      93 .. 0.66
   2 !   31.0   0.0   5.2e-12   2.1e-08     188     293 ..      85     184 ..      73     185 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.009
    TIGR00602  8 keslkdflkkskiskItksSlssktSsvRkknasstdlsarkrealSleqdkslelsklk 67
                 ++ +++fl++    +  + S+++ t +  +  +s  d   ++  + S +q++  + +++ 
  MMETSP1174-20130828|10198_1 30 ADQFDQFLHQAGAYQALALSSTVGTAAATR-STSRADHGTQDSSRSS-RQNHQQQINRED 87
                 567888888888888888888888884433.3444553455555555.888877777765 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.2e-12
    TIGR00602 188 lGddlqtdkklIlvedlPnkFyrdtd..alrevlrtkyvsegrlplvliiteselnlegdNnqdrllFsaetimnkeileeprvsnikFNPiapTllkKfLkrIvtke 293
                  + d+ ++ + +Il+e lP   +r+ +  +   +lr  +    + p+vli +++       N+        ++ ++++i+  p v+ ++FNP+    + K Lk I++ e
  MMETSP1174-20130828|10198_1  85 REDNGHGRRCVILLESLPAPHHRSRQdgFRTSLLR-HLHDLNASPVVLIFSDV----AEKNEC-TTAL--QRSLGEDIMVSPLVQCVEFNPVTDLKIAKRLKEILRAE 184
                  458899999**************998877778888.88889999********9....345555.2333..3679*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 939.15
//
Query:       MMETSP1174-20130828|10199_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   14.5   0.2     0.0013   14.5   0.2    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   3.1e-07    0.0013     174     220 ..      65     111 ..      36     145 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.1e-07
    TIGR02917 174 kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkai 220
                  +l++a  +++ +++ dp++++A  Lk ++l+ ++  eeA+a +  a+
  MMETSP1174-20130828|10199_1  65 RLSKAASALNSAIQLDPHHTQARILKCNVLREQEAMEEAEACFVAAA 111
                  67777777788888888888888888888888888888877776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 718.61
//
Query:       MMETSP1174-20130828|10203_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    5.6   8.1       0.54    8.4   0.9    2.8  3  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.9   0.00013      0.54      30      46 ..      37      53 ..       5      58 .. 0.75
   2 ?   -3.1   0.1      0.51   2.1e+03      38      42 ..      69      73 ..      63      74 .. 0.65
   3 ?   -0.4   0.0     0.076   3.1e+02      13      21 ..      88      96 ..      87      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00013
    TIGR04165 30 aeaevgeikCskCGyvF 46
                 +e+ v+ei+C+ C y F
  MMETSP1174-20130828|10203_1 37 EEEYVDEIQCDWCEYWF 53
                 4589**********998 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.51
    TIGR04165 38 kCskC 42
                  C+ C
  MMETSP1174-20130828|10203_1 69 LCEAC 73
                 47777 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.076
    TIGR04165 13 CGskDKdvs 21
                 CG kD  + 
  MMETSP1174-20130828|10203_1 88 CGKKDASAT 96
                 9***97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|10205_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|10211_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 964.25
//
Query:       MMETSP1174-20130828|10206_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-107  356.8   0.0   3.1e-107  356.5   0.0    1.1  1  TIGR00109 hemH: ferrochelatase


Domain annotation for each model (and alignments):
>> TIGR00109  hemH: ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.5   0.0  7.6e-111  3.1e-107       2     321 ..      69     396 ..      68     397 .. 0.95

  Alignments for each domain:
  == domain 1    score: 356.5 bits;  conditional E-value: 7.6e-111
    TIGR00109   2 krkkvgvlllnlGtPdkleeverylkqllaDpevvdisrak..lrkllaklilklrskkikknYeeigggSPllqiteqqaealeklld..eeidakvyialryaePfleeavkellkdeveklvvlslyPqfSssttgssfkelaealkkleslr....lkisviesyydeekyikaladsikeklkkrpep.dkavllfSaHglPkkvvdeGDaYpeeveatvkliaeklgakneyaltyQSrvgpeeWLepyteelleklgekkvdklvvvpigFvadhlEtleeidleyrvvaeeagakkykripalNakpefiealaelvlekl 321
                  k +k+gv+llnlG+P+++++ve +l++l+aDp+++++++ +  l+k+la++++k r+++++  Ye+igggSP++++t++qa+al+  l+       k y+a+ry+ Pf+e+a++e+l+d+++ lvvl+lyP+fS+st+gss + l+e+++k+  +     +  +v++s+yd ++y++  a+ i+++l++  ++ d  ++lfSaHg+P++++ +GD+Y+++++++vkli e+l++   + l+yQSrvgp eWL+pyt+ +l++lg+ +v++lvvvpi+Fv++h+Etleeid+eyr++ae+ g+++++r+palN++  fi  la++v e l
  MMETSP1174-20130828|10206_1  69 KIPKIGVILLNLGGPENQDDVEGFLYNLFADPDIIRLPKFLsgLQKPLATVLSKRRAPQSREAYESIGGGSPIVRYTKAQASALASELEqrGYEGVKCYVAMRYWYPFTEQALDEVLADDINALVVLPLYPHFSISTSGSSLRVLQEIFAKQANVWgtdqILHTVVPSFYDRPGYVNSQAELINHELDQYDNDlD-RHVLFSAHGVPQSYIAAGDPYQNHIQQCVKLISEALDPSVTVHLSYQSRVGPVEWLRPYTDTMLQDLGAAGVKNLVVVPISFVSEHIETLEEIDMEYRELAESCGISNWRRCPALNNNAGFITDLASVVEEAL 396
                  778***********************************865338*********************************************7555679***************************************************99988765322237789*****************************66.99*******************************************************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1503.39
//
Query:       MMETSP1174-20130828|10215_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 179.65
//
Query:       MMETSP1174-20130828|10213_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1174-20130828|10216_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 1338.42
//
Query:       MMETSP1174-20130828|10218_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|10214_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 813.93
//
Query:       MMETSP1174-20130828|10219_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|10223_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|10225_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1377.84
//
Query:       MMETSP1174-20130828|10228_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1756.71
//
Query:       MMETSP1174-20130828|10233_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-43  146.7   0.0    1.9e-43  146.5   0.0    1.0  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
    1.7e-10   38.9   0.0    3.8e-10   37.8   0.0    1.6  1  TIGR01664 DNA-3'-Pase: DNA 3'-phosphatase
    1.2e-07   28.2   0.1    1.6e-06   24.4   0.1    1.9  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    0.00013   19.3   0.0       0.23    8.7   0.0    2.2  2  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
     0.0022   15.3   0.0     0.0033   14.7   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0052   14.3   0.1      0.015   12.7   0.0    1.7  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
       0.01   13.1   0.0      0.015   12.6   0.0    1.2  1  TIGR01978 sufC: FeS assembly ATPase SufC
      0.011   12.6   0.0      0.017   12.0   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.015   12.0   0.0      0.022   11.4   0.0    1.2  1  TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain
      0.035    9.5   0.0      0.046    9.1   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   4.6e-46   1.9e-43     263     502 ..       1     239 [.       1     254 [. 0.87

  Alignments for each domain:
  == domain 1    score: 146.5 bits;  conditional E-value: 4.6e-46
    TIGR01663 263 Gmwdhlkeea.ndGveisiddsifvGdaaGrpetkaatkkkkdfslvdrlfalnlGlsfatpevfflkkqveqfek..pdfeprsvsdsvslllpedlalld.aspevvvavGlpGaGkstflkkflvsaGykivnadtlGstqrcltackraldsGkrvvvdntnvdaasrkkylqlarekgvpcrcllltvtleqvkhniafrelsdsa....rikvkdmvlygykkkyeepal..deGfiailkvnf 502
                  G w+ +++++   G+ ++  +++fvGd aGr   k +  kkkdf   d  falnl ++fatpe+ fl+++ e ++k   df+p+ +  s     p  l + + +s e+v+++G pG+Gkst+ k  +    y  vn+dtl +  +cl   k al++Gk+vvvdn       r +yl  a+++gvpcr + l+v+ e   h + +r+l+ ++      +v  mv++++ k+ e p    +eGf+ + kv +
  MMETSP1174-20130828|10233_1   1 GGWEFVESQLtATGMTVDRSQCYFVGDGAGR---KVPVVKKKDFGDSDLKFALNLKVPFATPEECFLGQHQE-YDKvfDDFDPHRLGLS-----PTPLHFGSvESQEMVIVIGAPGSGKSTYSKGVFG--DYCRVNRDTLKTPAKCLKVTKAALEEGKSVVVDNQSRARKDRVQYLAAAKAAGVPCRAVFLDVPKEFCFHMNEYRKLCSASpehrDQRVPAMVIHAFYKNLELPKAgdAEGFTEVIKVGL 239
                  66999999972579****************9...68999****************************97655.55523699*9987654.....444444431689*****************99885..6****************************************************************************8776333246899************9975448******99976 PP

>> TIGR01664  DNA-3'-Pase: DNA 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   9.1e-13   3.8e-10     112     166 ..       1      63 [.       1      64 [. 0.91

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 9.1e-13
    TIGR01664 112 Gmveyleskyis...kiklkrsfyvGDaagrkkn.....dfsdaDikfAknlgleFkypeefF 166
                  G +e++es+ +     ++ ++ ++vGD agrk +     df d+D kfA nl ++F++pee F
  MMETSP1174-20130828|10233_1   1 GGWEFVESQLTAtgmTVDRSQCYFVGDGAGRKVPvvkkkDFGDSDLKFALNLKVPFATPEECF 63 
                  6799999999665568999999**********9999999**********************99 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   3.9e-09   1.6e-06       7     122 ..      96     196 ..      92     250 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.9e-09
    TIGR04075   7 elslvvlvGasgsGkstfarkhfkptevlssdvfrglvsddendqsasadafdvleyiagkrlkrgkltvvdatnvqaedrkklvelareydvlpvaivldlpekvclernaared 122
                  +  +v+++Ga gsGkst+++  f ++  +  d++++            a       ++++  l++gk  vvd  +  ++dr ++++ a+   v   a+ ld+p++ c + n+ r+ 
  MMETSP1174-20130828|10233_1  96 SQEMVIVIGAPGSGKSTYSKGVFGDYCRVNRDTLKT-----------PA---K-CLKVTKAALEEGKSVVVDNQSRARKDRVQYLAAAKAAGVPCRAVFLDVPKEFCFHMNEYRKL 196
                  5678****************9998665554444432...........12...2.3457778899***********************************************99963 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00056      0.23       1      19 [.      99     117 ..      99     133 .. 0.86
   2 !    8.4   0.0   0.00068      0.28      58     136 ..     136     224 ..     130     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00056
    TIGR03574   1 liiltGlPgvGkstfskel 19 
                  ++i+ G Pg+Gkst+sk +
  MMETSP1174-20130828|10233_1  99 MVIVIGAPGSGKSTYSKGV 117
                  5899************975 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00068
    TIGR03574  58 lklikealenkysvivddtnyynskrrdliniakerdknyiiiylkapldvllkrni..........erGekiPnevikkmyekfdePg 136
                  lk+ k ale+  sv+vd+       r + +  ak   ++   ++l  p + +++ n           +r +++P  vi+ +y+ ++ P+
  MMETSP1174-20130828|10233_1 136 LKVTKAALEEGKSVVVDNQSRARKDRVQYLAAAKAAGVPCRAVFLDVPKEFCFHMNEyrklcsaspeHRDQRVPAMVIHAFYKNLELPK 224
                  577899****99*********9999***************************9998522223333335789999999999999999886 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.2e-06    0.0033      30      60 ..      93     123 ..      76     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.2e-06
    TIGR02324  30 eveaGelvalsGksGaGkstllkslyanYlp 60 
                  +ve+ e+v+++G+ G+Gkst  k ++++Y  
  MMETSP1174-20130828|10233_1  93 SVESQEMVIVIGAPGSGKSTYSKGVFGDYCR 123
                  68999************************64 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.7e-05     0.015       2      20 ..     100     118 ..      99     125 .. 0.86
   2 ?   -1.6   0.0      0.88   3.6e+02      93     133 ..     162     200 ..     135     209 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-05
    TIGR01351   2 lvllGpPGsGKGTqakrla 20 
                  ++++G+PGsGK+T++k + 
  MMETSP1174-20130828|10233_1 100 VIVIGAPGSGKSTYSKGVF 118
                  799************9775 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.88
    TIGR01351  93 aeaLdelleelglkldavielkvpdevlverisgRricpkc 133
                  +++L ++ + +g+     + l+vp+e  ++  + R +c+++
  MMETSP1174-20130828|10233_1 162 VQYLAAA-KAAGV-PCRAVFLDVPKEFCFHMNEYRKLCSAS 200
                  5566653.34455.445567999999999988888888765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05     0.015      23      57 ..      94     127 ..      91     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
    TIGR01978  23 vkkGevhaimGpnGsGkstLskvlaghekyevtsG 57 
                  v++ e+++++G+ GsGkst sk + g+  ++v + 
  MMETSP1174-20130828|10233_1  94 VESQEMVIVIGAPGSGKSTYSKGVFGDY-CRVNRD 127
                  78889*****************999975.556555 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.1e-05     0.017     141     164 ..      94     117 ..      91     126 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.1e-05
    TIGR02788 141 iaakkniiisGgtgsgKTTflkal 164
                  +++++ +i++G++gsgK T+ k +
  MMETSP1174-20130828|10233_1  94 VESQEMVIVIGAPGSGKSTYSKGV 117
                  789999**************9976 PP

>> TIGR01613  primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-05     0.022      71     138 ..      92     156 ..      89     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.4e-05
    TIGR01613  71 GetseqklffLfGnGanGKstfqqvlsnllGdyavtaeaslkleeasehrfelarLe.Gkrlvigseve 138
                  G+++ q +++++G+ ++GKst+ +    ++Gdy   ++ +++ + a+  + ++a Le Gk++v+++ ++
  MMETSP1174-20130828|10233_1  92 GSVESQEMVIVIGAPGSGKSTYSK---GVFGDYC-RVNRDTLKTPAKCLKVTKAALEeGKSVVVDNQSR 156
                  8999******************97...79****9.7777777777777788888885388888876654 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00011     0.046      84     110 ..      94     120 ..      90     131 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00011
    TIGR00956  84 ikpgelvvvLGrPgsGcstlLksiask 110
                  +++ e+v+v+G PgsG+st+ k + ++
  MMETSP1174-20130828|10233_1  94 VESQEMVIVIGAPGSGKSTYSKGVFGD 120
                  6789****************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        93  (0.0226719); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|10236_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|10232_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1968.52
//
Query:       MMETSP1174-20130828|10241_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|10243_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.4   0.0     0.0013   15.1   0.0    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0063   12.8   0.0     0.0078   12.5   0.0    1.0  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.035   11.7   0.1      0.078   10.6   0.1    1.5  2  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-07    0.0013     506     593 ..      22     112 ..      18     135 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-07
    TIGR03591 506 iKiegiteeilekaleqakegRlhiLdkmekvisepreelseyaPrietikink....dkireviGkgGkvireiieetgakidieddGtvk 593
                  +K++   e  +++al+  ++++++ + k++   + p + ++e   r   i i++    + i+ +iG+ G++ +++ +e+g+ki i+ +G+vk
  MMETSP1174-20130828|10243_1  22 VKVNT-REMRMRRALKTERDAKIKEILKLKPYYAPPSDYVRERPRRKLYIPIKEypnyNFIGLIIGPRGNTQKRMEKESGCKIAIRGKGSVK 112
                  55543.3344999**********9999999999999999999988888999965333389******************************97 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.7e-06    0.0078     547     624 ..      33     115 ..      27     133 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.7e-06
    TIGR02696 547 ealkqakdarlaildvlaeaidspdelsetaprviavkipv......dkigevigpkgkvinsiqdetgaeisieddgtvyiga 624
                   alk  +da+ + +  l+   + p +   + pr  ++ ip+      + ig +igp+g +  ++++e+g +i+i   g+v  ga
  MMETSP1174-20130828|10243_1  33 RALKTERDAKIKEILKLKPYYAPPSDYVRERPRR-KLYIPIkeypnyNFIGLIIGPRGNTQKRMEKESGCKIAIRGKGSVKDGA 115
                  6888888888776666778888888888888874.455665222222569****************************997766 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.4     2e+03      70      89 ..      33      52 ..      28      64 .. 0.68
   2 ?   10.6   0.1   5.7e-05     0.078       9      36 ..      81     108 ..      77     116 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.4
    TIGR03665 70 kAlkLldddkvLevidlkel 89
                 +Alk  +d k+ e+++lk +
  MMETSP1174-20130828|10243_1 33 RALKTERDAKIKEILKLKPY 52
                 67777777777777777766 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 5.7e-05
    TIGR03665   9 igvliGkkgevkkeieektkvkleidse 36 
                  ig++iG +g+++k++e++ ++k+ i  +
  MMETSP1174-20130828|10243_1  81 IGLIIGPRGNTQKRMEKESGCKIAIRGK 108
                  5667777777777777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|10238_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   17.6   0.0      0.003   16.4   0.0    1.7  1  TIGR01445 intein_Nterm: intein N-terminal splicing region


Domain annotation for each model (and alignments):
>> TIGR01445  intein_Nterm: intein N-terminal splicing region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.2e-07     0.003       1      83 []     215     290 ..     215     290 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.2e-07
    TIGR01445   1 CltgdtkvlledGelikieelvekakekgednglikvlsldgeevikkksvavwkrkgeg...kliriktkngreitaTpdHkllt 83 
                  C++gd +v+le+G  i++ e+              ++ls  +++v +   v++  +++++    ++++ t + ++++aT++H ++t
  MMETSP1174-20130828|10238_1 215 CFSGDDLVTLETGDAIRLSEVRIG----------DRILSASKDGVSSFSDVVFLPHGANQkqtTFVEVITSKDKQFRATRSHLIMT 290
                  *************98888888743..........3788887777777777777777777765467******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.62
# Mc/sec: 815.35
//
Query:       MMETSP1174-20130828|10244_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 933.13
//
Query:       MMETSP1174-20130828|10246_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 797.32
//
Query:       MMETSP1174-20130828|10249_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-08   28.1   0.0    1.4e-07   27.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.037   11.3   0.0      0.062   10.6   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   6.8e-11   1.4e-07      75     186 ..      95     205 ..      71     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.8e-11
    TIGR03903  75 aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves..hakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                   L++ + + + +q+LDal   h++ +v  D+kP+n  +   + ++  + ++LDFG++   + g ++    +   ++   G+P++ + e   g +   + Dl + GL++l  L G 
  MMETSP1174-20130828|10249_1  95 LLSPSQLSGIAVQMLDALRRVHERKLVFVDVKPDNFSLGIPGSKQsdTVHILDFGVAEkFMIGGKH----RDRDASGGGGTPSFMSVEVHEGKAASRRDDLESLGLVLLKFLIGS 205
                  47888999999************************9998877654116789*****8623333333....223345567*******************************99996 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     3e-05     0.062      93     138 ..      93     153 ..      65     165 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3e-05
    TIGR03724  93 l.........ellkevGelvgklHkagivhgDlttsNiivk......ddklyliDfGLgkk 138
                             ++ ++ +++ ++H+ ++v+ D+ + N+ +       +d++ ++DfG ++k
  MMETSP1174-20130828|10249_1  93 GcllspsqlsGIAVQMLDALRRVHERKLVFVDVKPDNFSLGipgskqSDTVHILDFGVAEK 153
                  3444444445666777788999****************996666676999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.51
# Mc/sec: 1159.43
//
Query:       MMETSP1174-20130828|10251_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.7  13.6      0.019   10.5   9.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.03   10.4   1.1      0.031   10.4   0.8    1.0  1  TIGR00580 mfd: transcription-repair coupling factor
      0.091    8.2  12.0        0.1    8.0   8.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.5   1.4e-05     0.019     780     891 ..       5     117 ..       1     146 [. 0.33

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.4e-05
    TIGR02168 780 keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeele.eleeeleellkekasleeal 891
                  +e e+e++  +++  ++ ++l+a+r+ l +le+e ++ + e a++e+r++ le++++ ++ ++ee++++++   e+ + l  e+ee+++++e     ++ee+++ ++++++ +
  MMETSP1174-20130828|10251_1   5 DELEAELAITRQSTLNAVRDLDASRAHLLRLEDERKAWNLEKADLEQRVDTLEEQLRWTSASAEEAKKNWDVSIEDHALLVTEMEETKRQQEeSVAHQHEEIQDLMSEVDTLR 117
                  22223333333333333333333333333333333333333333333333333333333333333333333333333333333322222222111222222222222211111 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   2.3e-05     0.031      50     167 ..      10     127 ..       3     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.3e-05
    TIGR00580  50 efdvadqrsleeleeiellpakeilleeetrarakkkaaaveeaektekealkegkkkaglekllpllfeelsslldelkdetlilldepekvekaaeelereleefleaaleakkli 167
                  e++++ q++l++++ ++ + a+ + le+e++a   +ka  +++++++e++ + +  + ++ +k + + +e+++ l+ e++++     + + ++++++++l +e+  + ++al+++ ++
  MMETSP1174-20130828|10251_1  10 ELAITRQSTLNAVRDLDASRAHLLRLEDERKAWNLEKADLEQRVDTLEEQLRWTSASAEEAKKNWDVSIEDHALLVTEMEETKRQQEESVAHQHEEIQDLMSEVDTLRKNALNQNVFV 127
                  567999**************************999999999999998888888889999999******************99998888888888889999988888888888777665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.3   7.6e-05       0.1     316     427 ..       9     117 ..       1     145 [. 0.51

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 7.6e-05
    TIGR02169 316 eeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelk 427
                   el    +   +a  ++d+ ++++  le e ++++ e++ l+++++ l+e+l+   a +ee +k+ + + e ++ l +++e++k++++e+     +  ee + l +e+  l+
  MMETSP1174-20130828|10251_1   9 AELAITRQSTLNAVRDLDASRAHLLRLEDERKAWNLEKADLEQRVDTLEEQLRWTSASAEEAKKNWDVSIEDHALLVTEMEETKRQQEESV---AHQHEEIQDLMSEVDTLR 117
                  3333333333444445555555555555555555555555555555555555555555555555555555555555555555555555544...222233333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 614.26
//
Query:       MMETSP1174-20130828|10250_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00045   16.2   0.0       0.33    6.7   0.1    2.6  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.022   11.2   5.3       0.03   10.8   3.7    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1   0.00016      0.33     129     152 ..     122     145 ..     108     155 .. 0.87
   2 !    6.7   0.0   0.00017      0.35     131     209 ..     159     257 ..     153     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00016
    TIGR00870 129 tkgitalilAihkqnyeivklLle 152
                   +g ta+++A+ +q +e++++ + 
  MMETSP1174-20130828|10250_1 122 EEGYTAIHVAADCQHLEVLQMIVS 145
                  5799****************9985 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00017
    TIGR00870 131 gitalilAihkqnyeivklLlekgasve.arakgdefv...................ksqekdslyhgespLnlaaclasesivsllsedpAdiltads 209
                  g t++++A  + +  iv+ L  kga++  +   g+  +                   +++ +     g  p  +a ++++ +i++ll+++ A + t+d+
  MMETSP1174-20130828|10250_1 159 GDTPVMIACDNGSCPIVEFLASKGADLGrLDSSGKTLLftatveghidnvrfliknrYNDLERANDEGWTPFWAACATKQLNIMTLLMKNQAKLDTTDK 257
                  789999999999999999999999999986666666666677777777788887554333333445688999999999999999999999999999987 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.7   1.5e-05      0.03     210     339 ..      16     147 ..       5     151 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.5e-05
    TIGR01651 210 edeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaae.addddlsdeddedaetpgeakrpd.rpftdlneevdykvftsafdeivdaeelcdeeeldrlrafldkq.laalsgvvgrl 339
                   +e++  + + ++ e ee  + +++++  s+ ++++a++   e++ +++ +   +d+l+  d ++++ pge+  +d + f +  +e + kv+ +  ++ +d  el dee  + +    d q l  l+ +v+ +
  MMETSP1174-20130828|10250_1  16 SEEDEYTEGAEQQLELEESNGAQNNNHSPSNQQDKQASAGLPEESPKNTHKdPVNDGLKG-DIQSNDPPGEVSEDDvDMFWEACQEGEVKVIKNLIEKGIDVSELKDEEGYTAIHVAADCQhLEVLQMIVSLV 147
                  334444444555555555555666667778889999999887777766655055555555.55666779***998835688999******************************9999865377788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.62
# Mc/sec: 674.85
//
Query:       MMETSP1174-20130828|10252_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 971.92
//
Query:       MMETSP1174-20130828|10254_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1169.05
//
Query:       MMETSP1174-20130828|10256_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1905.38
//
Query:       MMETSP1174-20130828|10258_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.63
# Mc/sec: 649.47
//
Query:       MMETSP1174-20130828|10261_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 821.74
//
Query:       MMETSP1174-20130828|10268_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 367.88
//
Query:       MMETSP1174-20130828|10265_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 1349.22
//
Query:       MMETSP1174-20130828|10267_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|10271_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-09   33.2   0.1    9.7e-09   32.6   0.0    1.2  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    2.8e-08   31.0   0.0    6.4e-08   29.8   0.0    1.5  2  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    2.6e-05   21.1   0.0    4.5e-05   20.3   0.0    1.3  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
     0.0015   15.4   0.1      0.032   11.0   0.0    2.0  2  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
  ------ inclusion threshold ------
      0.042   10.8   0.0      0.064   10.2   0.0    1.1  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family


Domain annotation for each model (and alignments):
>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11   9.7e-09     239     310 ..     137     205 ..     130     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.2e-11
    TIGR04047 239 daYreefearaaeleleigavvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsGvPvvaselaP 310
                  ++Y++++ ++a+e++ +   + +l +++ ael a+++ A a++ +s  EG   ++lEa+A GvPv++++++ 
  MMETSP1174-20130828|10271_1 137 ENYARQVYHAAHESSGR---MRVLAPLPRAELLAVMKGATAVVNTSHSEGMSGALLEAMALGVPVLSRDIQG 205
                  57888888888887655...599*********************************************9964 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.63   5.2e+02     189     214 ..      57      82 ..      43      94 .. 0.79
   2 !   29.8   0.0   7.8e-11   6.4e-08     222     312 ..     118     211 ..     113     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.63
    TIGR03088 189 faadeevvvgtvgrleavkdqvtLvr 214
                    a e+ v++ v+ l++vkd   L+ 
  MMETSP1174-20130828|10271_1  57 GVAAEDRVLLLVASLRPVKDILFLLD 82 
                  5566777888999******9998876 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 7.8e-11
    TIGR03088 222 qkkekeerlrLvivG....dGaarealealveaaGleklvwlaGertdiaellqalDvfvLpslaeGisntvLeamasglPviatavGGnaeLve 312
                  ++k++++   L+++G    +  ar+  +a  e++G  + v  +  r+++ ++++++  +v +s +eG+s ++Leama g+Pv++ ++ Gn +L++
  MMETSP1174-20130828|10271_1 118 RRKKSADGWVLMVIGpvldENYARQVYHAAHESSGRMR-VLAPLPRAELLAVMKGATAVVNTSHSEGMSGALLEAMALGVPVLSRDIQGNRALLR 211
                  55556666667766633323344555555555566433.334556999******************************************98754 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.5e-08   4.5e-05     283     337 ..     151     205 ..     123     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.5e-08
    TIGR03449 283 akrvrflpPrpkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarvGG 337
                  + r+r+l+P p++el +v + a+ v+  s+se +    lea a G Pv++ ++ G
  MMETSP1174-20130828|10271_1 151 SGRMRVLAPLPRAELLAVMKGATAVVNTSHSEGMSGALLEAMALGVPVLSRDIQG 205
                  56899********************************************999877 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.018        15     187     220 ..      50      83 ..      33      90 .. 0.85
   2 !   11.0   0.0   3.9e-05     0.032     267     306 ..     166     205 ..     120     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.018
    TIGR03999 187 eklkeklgieedekvlihvsnfRkvkrvedvvev 220
                  ++lk+ +g++ +++vl+ v+ +R+vk +  +++v
  MMETSP1174-20130828|10271_1  50 DELKRIHGVAAEDRVLLLVASLRPVKDILFLLDV 83 
                  57899999******************99766665 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.9e-05
    TIGR03999 267 eellslsDllllpsekesFGLaaLeamacgvpviasnvgG 306
                    ++  +  ++ +s++e    a+Leama gvpv++ ++ G
  MMETSP1174-20130828|10271_1 166 LAVMKGATAVVNTSHSEGMSGALLEAMALGVPVLSRDIQG 205
                  4555667778889999*9999**************99988 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.7e-05     0.064     246     317 ..     134     205 ..     131     220 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.7e-05
    TIGR02149 246 evaeevkqavakldreregvvwieemlekeelvellsaaevfvcPsvyePlGivnleamacetpvvasavGG 317
                   ++e+  ++v + ++e +g + +   l++ el +++++a++ v  s  e +    leama ++pv++ ++ G
  MMETSP1174-20130828|10271_1 134 VLDENYARQVYHAAHESSGRMRVLAPLPRAELLAVMKGATAVVNTSHSEGMSGALLEAMALGVPVLSRDIQG 205
                  56667777777888888888889999****************************************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2208.88
//
Query:       MMETSP1174-20130828|10273_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1029.51
//
Query:       MMETSP1174-20130828|10274_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|10272_1  [L=1199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-05   21.0   0.1    0.00011   19.7   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00018   19.1   0.1      0.053   11.1   0.0    2.6  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00054   15.7   0.8    0.00085   15.1   0.6    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     8e-08   0.00011      45     152 ..     537     644 ..     507     665 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 8e-08
    TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdte 152
                   + ++Ak  le  l    +d d+ + lA++   lg+ ++  ++ r Al+++p+++ ++ N G++L +++++eeA + ++ A++  + +q a +   ++ +  +  +++
  MMETSP1174-20130828|10272_1 537 TQPRRAKILLESVLGFGDADLDVLSKLAMVEGMLGDANASVKYARAALAINPKSPGLMVNLGVYLLETRDMEEASKIMTGAVAVIQEQQGAGAAAEIVKVISQFLQRK 644
                  57899999999*************************99999999*************************************998777777766666665555555544 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   3.9e-05     0.053      57     120 ..     562     625 ..     550     640 .. 0.83
   2 !    5.0   0.0     0.003       4.1      54      85 ..     800     831 ..     778     839 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.9e-05
    TIGR02552  57 gLaaclqalkeyeeAiaaYal.aaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                   La++  +l++ + A   Ya+ a+a+++++p  ++ +++ ll+  + eeA k + +a+++ +e++
  MMETSP1174-20130828|10272_1 562 KLAMVEGMLGDAN-ASVKYARaALAINPKSPGLMVNLGVYLLETRDMEEASKIMTGAVAVIQEQQ 625
                  6888888998865.5556665156899********************************999876 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.003
    TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                   w++La +    + y++A + +++a+ +++++
  MMETSP1174-20130828|10272_1 800 CWIRLARAQLLVHAYDDAFQSFDRAYVISRHN 831
                  599***********************999875 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   6.2e-07   0.00085     783     868 ..     536     622 ..     507     663 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.2e-07
    TIGR02917 783 ekdedkAakhYqtvvkkapdnavvLNNLAwlalerkdpk.AleyAekAlklapnqpailDTlGwvlvekgeakealkllrkAvklap 868
                  + + + A   ++ v+   + ++ vL  LA++++   d+   ++yA  Al+ +p++p  +  lG+ l+e+ + +ea k++  Av+  +
  MMETSP1174-20130828|10272_1 536 KTQPRRAKILLESVLGFGDADLDVLSKLAMVEGMLGDANaSVKYARAALAINPKSPGLMVNLGVYLLETRDMEEASKIMTGAVAVIQ 622
                  333344444444444444444444444444444444444234444444444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.19s 00:00:00.90 Elapsed: 00:00:00.49
# Mc/sec: 3229.69
//
Query:       MMETSP1174-20130828|10277_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-11   40.4   0.0    4.4e-06   24.1   0.0    2.8  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0013       5.3      16      46 ..      84     114 ..      73     122 .. 0.86
   2 !   24.1   0.0   1.1e-09   4.4e-06     145     248 ..     198     306 ..     175     315 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0013
    TIGR03896  16 ettLieeGkaaddLfilldGaitvtikqeed 46 
                  ++++ e+G  +d++ ++  Ga++++++++++
  MMETSP1174-20130828|10277_1  84 NQRIFEKGDPSDFFVVVFRGAVSIRVPRSNG 114
                  68999*********************98876 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 1.1e-09
    TIGR03896 145 ilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedg.....asrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakL 248
                   +  ++ +D+  l    + +   ag ++++ +e  d+LY + +G a++ +++ +         v+ ++ G+++Ge  +l+ ++ +  +v+  + l++  id++++ ++L
  MMETSP1174-20130828|10277_1 198 CFKHWKRRDLVELSFFCRDQTYEAGSLILNQDEEPDGLYFIKTGSARVLVATRDnngilRNLLVSVLQPGDVFGEACVLDKEALSQFSVRPQTMLEVYRIDRTQVCQEL 306
                  56778888888888888899999*************************9987554566555678999**************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|10279_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|10281_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|10283_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|10285_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.99    4.7  18.3          1    4.7  12.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  12.7   0.00025         1     946    1003 ..      65     122 ..      42     126 .] 0.61

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00025
    TIGR00927  946 geqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                   +e+  +ae ++e+    k    +gg+d   se +ee  +e+ee+  +e  eee+e+ +
  MMETSP1174-20130828|10285_1   65 QERLNEAEREKETGARRKRKRKGGGGDSESSEGDEESGDEDEEDSGDESGEEEDESGD 122 
                   4444456666666666666666777777777766666666444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|10292_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1174-20130828|10291_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 706.14
//
Query:       MMETSP1174-20130828|10289_1  [L=1543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   24.7   0.0     0.0023   15.2   0.0    2.5  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0002      0.82       6      96 ..     313     396 ..     308     428 .. 0.82
   2 !   15.2   0.0   5.6e-07    0.0023     162     248 ..     881     965 ..     866     981 .. 0.88
   3 ?   -3.7   0.0      0.32   1.3e+03     194     246 ..    1451    1504 ..    1447    1507 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0002
    TIGR03896   6 avsesreiaaettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLa 96 
                   v++ r  + + ++i+ G+    +++++ G ++v     ++         + Ls G+ vGe+ ll   p  + +k v     +++ + +++
  MMETSP1174-20130828|10289_1 313 SVTHPRIFTPDDVIINAGVNGGCVYLIERGIVAVVSVHFDQTY-------TYLSGGDYVGESCLLYSVPCTTNVKCVTFCDCFQLNRTAFI 396
                  67788888899999****************9999876665544.......58**********************99988777777776655 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 5.6e-07
    TIGR03896 162 kkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakL 248
                  k++++  g+v+++  +    +Y + +G++e+  s d++ +   ++ +G  +Ge +++  + + tatv+a + +++L++ + ++  +L
  MMETSP1174-20130828|10289_1 881 KPQRFCFGDVIVHYADLGMEMYFIDDGQVEVL-SADES-TLYCHLEKGSYFGESAIFKHEDHRTATVRASKLSEILILTRVDFEREL 965
                  6889999**********************985.55554.56789****************99****************999887766 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 0.32
    TIGR03896  194 isedgasrevgss.rrGeilGelsflnsdlaatatvkavealvlLaidkeelaa 246 
                   i +++ +r +g +   G+ +Ge  ++  +     +  a+ +++l+++ +++l  
  MMETSP1174-20130828|10289_1 1451 IITENKGRRIGTTfGPGNHFGEACLVSKSGIRLESASAICNTELFTVTRKDLES 1504
                   555556666665414677777777777776666777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.89u 0.16s 00:00:01.05 Elapsed: 00:00:00.73
# Mc/sec: 2789.85
//
Query:       MMETSP1174-20130828|10295_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|10296_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1241.26
//
Query:       MMETSP1174-20130828|10299_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 682.79
//
Query:       MMETSP1174-20130828|10305_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|10303_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1184.52
//
Query:       MMETSP1174-20130828|10306_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.54
# Mc/sec: 1046.14
//
Query:       MMETSP1174-20130828|10309_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.63
# Mc/sec: 94.28
//
Query:       MMETSP1174-20130828|10308_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 948.67
//
Query:       MMETSP1174-20130828|10315_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.65
# Mc/sec: 123.87
//
Query:       MMETSP1174-20130828|10318_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 270.26
//
Query:       MMETSP1174-20130828|10320_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 294.15
//
Query:       MMETSP1174-20130828|10319_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-10   38.2   6.5    5.4e-10   37.3   4.5    1.4  1  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   4.5   1.3e-13   5.4e-10      12     150 ..      28     166 ..      23     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.3e-13
    TIGR03902  12 aegewWRlltghlvHlnwaHlllnlagllllvllferrlrarrllllllllsllislglllllpeleaYvGLSGvlhGlfal....galr..dirkkrksswllllgvlaklaleqltgasastaeligarvaveaHlaGalsGl 150
                  +e+e+ R+l+ ++vH +++Hl+ln+++  +l++ +er + + + l+++ l++++  ++ ++++p +++ vG SG ++G++ l    +a++   ++++  s+w+ +  ++++ + e+++    ++         + aH+ G++ G+
  MMETSP1174-20130828|10319_1  28 EEHEYYRFLSYQFVHGGINHLVLNMIMQTILAIPIERVHGTVKTLFAYELCVIFGAIFAIWFDP-YTTVVGASGGVYGVYGLhwanLAINfdSMKNGALSRWIRFGFLFIWAMAEFFMYLANTSP-----TSSHSAHVGGIFFGF 166
                  489***************************9999999999888888888887777777777777.7788********997541111233233677999999**9999999999999888777422.....245678888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 728.69
//
Query:       MMETSP1174-20130828|10322_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.40
# Mc/sec: 207.88
//
Query:       MMETSP1174-20130828|10324_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|10326_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|10328_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 587.12
//
Query:       MMETSP1174-20130828|10330_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 411.05
//
Query:       MMETSP1174-20130828|10331_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 713.37
//
Query:       MMETSP1174-20130828|10333_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1040.20
//
Query:       MMETSP1174-20130828|10334_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-08   31.3   0.0    1.3e-07   29.9   0.0    1.7  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.2e-11   1.3e-07       2     108 ..      35     156 ..      34     208 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 3.2e-11
    TIGR00401   2 kitfalGCfWgveklfr........kidgvektkvGylngktenPt....yeevCs....gdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaae 108
                  +++f++GCfW v++ f         + +     +vGy++g+  +P     y++       g+ ghaevv ++  ++++    L + f    +  ++  q  D+G++yr  + +   + + +a+
  MMETSP1174-20130828|10334_1  35 QVYFGCGCFWHVQHEFVaaetkllnRSNAALTSRVGYAGGNAGSPDgkvcYHNAARiadyGSLGHAEVVGLNIPEENFKSFAL-EYFRLFDNQGNRPDQRGDRGSEYRNLVGIPGGASSPLAK 156
                  689*************865444333344556789***********8677766554233348899********99998765444.54444455678889**********977655544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|10336_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 711.04
//
Query:       MMETSP1174-20130828|10337_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.54
# Mc/sec: 950.81
//
Query:       MMETSP1174-20130828|10343_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|10342_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 750.97
//
Query:       MMETSP1174-20130828|10344_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 874.43
//
Query:       MMETSP1174-20130828|10345_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|10347_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 734.74
//
Query:       MMETSP1174-20130828|10348_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|10349_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          5    5.0   8.7        1.5    6.7   2.0    2.5  2  TIGR03091 SASP_sspK: small, acid-soluble spore protein K


Domain annotation for each model (and alignments):
>> TIGR03091  SASP_sspK: small, acid-soluble spore protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.016        64       8      16 ..      21      29 ..      16      32 .. 0.82
   2 ?    6.7   2.0   0.00036       1.5       4      16 ..      40      51 ..      37      53 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.016
    TIGR03091  8 kdefASKRa 16
                 k ++A K a
  MMETSP1174-20130828|10349_1 21 KQDHAPKKA 29
                 899**9987 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00036
    TIGR03091  4 eprakdefASKRa 16
                    ak ++ASK a
  MMETSP1174-20130828|10349_1 40 AS-AKKDHASKKA 51
                 44.9*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|10351_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 162.88
//
Query:       MMETSP1174-20130828|10346_1  [L=715]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-125  415.4   3.0   1.3e-121  404.9   0.8    2.0  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
     6e-119  395.9   0.6   2.1e-115  384.2   0.1    2.0  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   3.1e-118  393.8   0.0   5.3e-118  393.0   0.0    1.3  1  TIGR00958 3a01208: antigen peptide transporter 2
    8.3e-93  309.7   1.9    1.2e-90  302.5   0.6    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.5e-86  287.7   0.9    2.3e-84  281.7   0.2    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.2e-82  274.0   4.0    2.2e-81  272.2   1.8    1.9  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      3e-77  258.4   2.2    1.8e-76  255.9   1.2    1.9  2  TIGR01192 chvA: glucan exporter ATP-binding protein
      1e-76  256.5   0.6    1.5e-76  256.0   0.4    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    8.4e-72  240.6   1.8    1.4e-71  239.8   1.2    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.1e-65  220.4   0.0    3.4e-65  218.7   0.0    1.7  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.4e-63  211.8   1.3    4.8e-63  211.3   0.9    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    6.7e-57  191.1   0.4    8.7e-57  190.7   0.3    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.9e-43  145.8   0.0    4.5e-43  145.2   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.4e-41  137.4   0.0      1e-40  137.0   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.6e-40  137.1   0.0    2.5e-40  136.5   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.1e-37  126.4   0.0    4.7e-37  125.9   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.5e-34  116.6   0.0    4.2e-34  115.9   0.0    1.3  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.1e-34  116.4   0.0    5.5e-34  115.5   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.2e-33  112.3   0.0    1.6e-19   68.1   0.1    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.3e-33  111.6   0.0    1.4e-32  110.9   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.9e-32  109.8   0.0    9.9e-32  108.1   0.0    1.8  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.1e-31  106.4   0.0    5.3e-31  105.7   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    5.3e-31  105.7   0.0    8.7e-31  105.1   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.2e-30  104.3   0.0    2.1e-30  103.6   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      2e-30  104.1   0.0    3.4e-30  103.3   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.3e-30  103.8   0.0    6.7e-30  102.3   0.0    1.7  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.3e-29   99.9   0.0    5.2e-29   99.2   0.0    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.6e-29   99.0   1.4    2.7e-28   97.0   0.3    2.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.3e-29   98.7   0.0    1.2e-28   98.1   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.8e-28   97.5   0.0      3e-28   96.8   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.6e-28   96.8   0.1    6.4e-28   95.5   0.1    1.6  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    8.2e-28   94.2   0.0      4e-23   78.7   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.1e-27   94.9   0.0    1.6e-27   94.3   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.8e-27   93.3   0.0    1.8e-26   90.7   0.0    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.5e-26   91.0   0.1    2.1e-26   90.5   0.1    1.2  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    4.4e-26   89.4   0.0    1.2e-25   87.9   0.0    1.6  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.8e-26   89.4   0.1    1.1e-24   84.9   0.1    2.5  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.1e-26   89.5   0.0    9.9e-26   88.6   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.1e-25   88.3   0.0    2.2e-25   87.3   0.0    1.5  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.2e-22   77.0   0.1    1.1e-21   75.2   0.0    1.8  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.1e-22   76.4   0.0    7.1e-22   75.6   0.0    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    2.6e-19   67.4   0.1    2.8e-11   41.2   0.1    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.8e-19   67.0   0.6    6.2e-19   65.8   0.0    1.8  1  TIGR00955 3a01204: pigment precursor permease
    3.1e-19   67.0   0.0    5.8e-19   66.1   0.0    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    5.2e-19   66.7   0.0    1.3e-18   65.4   0.0    1.5  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.8e-19   66.5   0.0    1.2e-18   65.5   0.0    1.4  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      5e-18   62.7   0.4    8.6e-15   52.1   0.2    2.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.8e-17   61.5   0.0    4.5e-17   60.2   0.0    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      3e-17   60.9   0.1    2.4e-13   48.2   0.0    2.3  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.9e-17   60.2   0.0    1.3e-16   58.8   0.0    1.7  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.6e-17   57.5   0.0      9e-17   57.1   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    1.4e-15   54.6   0.0      3e-15   53.5   0.0    1.4  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.7e-14   49.0   0.0      1e-13   48.4   0.0    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    9.7e-14   48.7   0.0    1.1e-12   45.2   0.0    2.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.2e-13   48.1   0.1    1.8e-12   45.1   0.1    2.3  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.7e-09   32.0   0.0      2e-08   30.2   0.0    1.4  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.3e-08   29.3   0.4    8.3e-06   22.1   0.3    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
      0.022   11.1   0.0      0.033   10.5   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00057      0.04     550     575 ..       2      28 ..       1      29 [. 0.89
   2 !  404.9   0.8  1.8e-123  1.3e-121      34     571 ..     142     685 ..     111     688 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00057
    TIGR02204 550 GriveqGthaeLiak.ggLyarlarLq 575
                  Grive+Gth+eLi    +Lya l++Lq
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVVvDSLYATLVNLQ 28 
                  9***********875268********9 PP

  == domain 2    score: 404.9 bits;  conditional E-value: 1.8e-123
    TIGR02204  34 tLslplavrklideGfskeesellnea...falllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpk.alpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaead.efisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLiak.ggLyarl 571
                     l++ + ++i   f+++ s++++ a     +++v+ +   ++ +l+        er+   +r   f+++l  + a+fd +r  e   +l++d+  ++++ G     +  ++++l+ a+ + +  s ++t+++l ++P++ +  ++  + v + +  s d   da++ ++ea+ +i+t+ +++ e+ + srf +++   +e   k+ ++ al   +  + v++a     ++ a     g+++  e+ + +l  ++ + +lgal+    +  +   aa r+  l ++++ i+a  + k a   +v+g +ef +v+fayP rpd+ +  g++lt+ +G+tva+vGPsG Gkst ++l+ rfydP+ Ga+lldG+d+++l+ +  r+++ lv+q+++lf + +++ni yG+p as+e++e+aak a+ + + + k+p+ ydt++Ge g++LsGGqkqriaiarai++d +iLLLdeatsaLd++se+ vq+al+ l k  +rtt+viahrL+t+++ad+ivv+ +Grive+Gth+eLia+ gg y+ l
  MMETSP1174-20130828|10346_1 142 FPLLGYFLAEMITIFFNTDTSDMMEGAnfwAGMFCVLGAAQFVGNFLQRCCFGITAERLAMHVRDVSFEKILGQDVAWFDXAR--EHRRKLASDSVAIRALAGERSGTSASQIVTLVVAFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAALDESKgATLDDVQGSLEFRNVRFAYPMRPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARaGGHYRGL 685
                  55678888889999888888877765411133555666667778888888888899************************988..56799*******************************************************************************************************************************************************************9999*******865555555666999*************988777145578*************************************************************************************************************************9968999*************************************************************9863378************************************8625667666 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00059     0.042     544     569 ..       2      28 ..       1      30 [. 0.88
   2 !  384.2   0.1  2.9e-117  2.1e-115      32     565 ..     148     685 ..     120     689 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00059
    TIGR02203 544 GkiverGtheeLla.rnGlYasLhkiq 569
                  G+ive+GtheeL+   + lYa+L ++q
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVvVDSLYATLVNLQ 28 
                  9**********985279******9998 PP

  == domain 2    score: 384.2 bits;  conditional E-value: 2.9e-117
    TIGR02203  32 llaallkplldegfselekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppe...kdeGt.ralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylk.dlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk..gRttlviahRLstiekaDrivvlddGkiverGtheeLlarn.GlYasL 565
                  +la+++  + +   s++ +    +a   +  +l + + +++f+   +++  ++++++++R   fek+l+   a fd     +   +l +ds  +   a +   +   + +t++ ++ v +  sWq+tl+++ ++P++a++  +  k + + + ++ ++++++  +v+ea+ + r + +fg + ++  Rf +   + ++  +k  + ++l + + q+ + +a ++  +ia +  + g++t  e++a+i  ++     l  L   +    +g +aa ++ +l D++p     de +  +l+ v+G++efrnv f yp + d e+  +++l++ aG++va+vG+sG Gkst v+l+ RFy+p++G +llDg+d++dlk++  R+q+ lvsq+ vLF +ti +n++Yg+   ++++++e+a++ a+++ d+v k p+  dt+vGe g +LsGGq+qR+aiaRa+++d  iL+LDeatsaLD+ seR vq+aL+ l+k  +Rtt+viahRLsti++aD+ivv+ dG+ive+GtheeL+ar  G+Y  L
  MMETSP1174-20130828|10346_1 148 FLAEMITIFFNTDTSDMMEGANFWA--GMFCVLGAAQFVGNFLQRCCFGITAERLAMHVRDVSFEKILGQDVAWFDXAREHR--RKLASDSVAIRALAGERSGTSASQIVTLVVAFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAiaaLDESKgATLDDVQGSLEFRNVRFAYPMRpDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKP-GASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAgGHYRGL 685
                  4555555555555554222222222..33444556677888888899*****************************987665..7889999999999999999999999*****************************9998888888888888999*********************************99999999999999*********************************************999999999**9888888899*************98522245544156899***************8758999***********************************************************************************9.99*************966******************************************************************863378************************************9872578766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.0   0.0  7.4e-120  5.3e-118     180     711 .]     145     686 ..      95     686 .. 0.90

  Alignments for each domain:
  == domain 1    score: 393.0 bits;  conditional E-value: 7.4e-120
    TIGR00958 180 iPkytgrvidtllqdksvealakaif...lltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilq.lnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPql...elsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanah.dFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711
                  + ++ +++i++ +++ + + ++ a f   ++++l +a ++ ++l+  +f ++ +r+ +++r   f+++l Qd+++fd ++  e   +l+sD+  +     ++      ++v l++++++ +s S+++tlv l  +P++  a  +  k+ ++ +    +a+  a+  + Ea+  +rT+ SF+ E   +srf+e+l   l+   kk +++ +      ++  l       ++ + l  +g+++  ++++ +L  +  +  +  L+    + +++  a+ ++ ++ d +P +   ++s   + + ++G +eF++V F+YP rpd++v  ++++t+ +G++va VGPsG GKSt + l+e++Y+P +G vllDg ++k++   +++++++lV qEPvlf+g++r+Ni+YG   + +e++ +aak an+h d + ++++ ydt+vge G qlsgGqkqriAiARA+vr+P +L+LDeAtSALD+++e+++qe      +a++rt ++iahrLst+++adki+v + g++ve Gth++L ++ +  y+ lv
  MMETSP1174-20130828|10346_1 145 LGYFLAEMITIFFNTDTSDMMEGANFwagMFCVLGAAQFVGNFLQRCCFGITAERLAMHVRDVSFEKILGQDVAWFDXAR--EHRRKLASDSVAIRALAGERSGTSASQIVTLVVAFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEhFIKKGTITALGQ-GFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIaalDESKGATLDDVQGSLEFRNVRFAYPMRPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEaldgLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAGgHYRGLV 686
                  557888899999888888888776663335788899999**************************************987..7899*********999999999**********************************9998888888888888888999**********************************976651555556665554.44455555555556778889999**************99988889999*999999999999*************973224566677889***************************************************************************************************************************8999*****************************************************9999988778899***************************************99987888776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0081      0.57     667     692 ..       2      28 ..       1      30 [. 0.89
   2 !  302.5   0.6   1.7e-92   1.2e-90     184     687 ..     174     684 ..     161     689 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0081
    TIGR01846 667 GkivesGkheellak.eglyaklyqqq 692
                  G+ive+G+heel+   ++lya+l + q
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVVvDSLYATLVNLQ 28 
                  9***********98779*****99887 PP

  == domain 2    score: 302.5 bits;  conditional E-value: 1.7e-92
    TIGR01846 184 allavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGd.tvarvreleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwf.GaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdilds.Pteass.agk.aalpelkGaiefenirfryk.edspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGah.dfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyak 687
                   + ++  a+ +  +l+   f+ +++r+ + +    +  +l+  +++f+  r     +a   +   ir +  + + t++  ++  vv ++v f  s ++tlv+l+ ++i +  +++    + +  ++  +   +a   + e++  i+ti +  +e     r+ +qla  ++   k  +++ l+ q+      l+aa   ++  a l   Ge++  +++a+ +     s  +  l     d  +  +a  r+  + d+ P+ a   ++k a+l +++G++ef+n+rf y  +   ev + ++l i+aG+++  vGpsG+Gkst  +l+ r+y P  G vl+dg+d+  +  +w r+q+g+v qe vlf ++irdni+ +kP++s e + +aakla  h d + + ++ y+t+vge G +lsGGq+qria+ara+v +P+il+ldeatsald +se+v+++ l+ +  ++ rt i+iahrlst+r+ad+i+v+ +G+ive+G+heel+a+ +g+y  
  MMETSP1174-20130828|10346_1 174 MFCVLGAAQFVGNFLQRCCFGITAERLAMHVRDVSFEKILGQDVAWFDXAREHRrKLA--SDSVAIRALAGERSGTSASQIVTLVVAFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALG-QGFGQFAVLSAAGFAYYiAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQqPAIAALdESKgATLDDVQGSLEFRNVRFAYPmRPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlkARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARaGGHYRG 684
                  5566666777777888889999999999999999999999999999987665430333..3455789988888999999999999*************************99999999**************************************************99988877777665.6677777777776666615555668********9987655444444445555556788889*********9863665543344428899***************6245679****************************************************************************************************996888899**********************************************************98335679************************************986777765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.019       1.3     687     709 ..       2      25 ..       1      26 [. 0.90
   2 !  281.7   0.2   3.3e-86   2.3e-84     218     709 ..     193     686 ..     136     687 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.019
    TIGR03796 687 GkvverGtHeella.kegaYarLi 709
                  G++ve GtHeel+  +++ Ya+L+
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVvVDSLYATLV 25 
                  9***********876899***998 PP

  == domain 2    score: 281.7 bits;  conditional E-value: 3.3e-86
    TIGR03796 218 lrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkva.ellsg.qlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadl..erldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaih.dvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaiden....lrrRgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709
                        +la+++    +++il   v +f+   a e   R  ++d+va ++l+g +  t + ++v++v+ + v +  +++++l+++ +  i ++a+ ++ +  ++++++    +  + g++ +++ +i t+   gle   +sr++ + a  l++  + g+ tal + + ++    ++     +++++  +ge+t   ++a    ++  +  + +l   + ++ ++e+ +  +r++ + +++   ++ +e+ k    ++   ++G++e+rnv+f+y ++ ++ +  +++l++  G+ vA+vG+sG+Gkst  +l+  +y+p++G +l+Dg++ ++++ +  ++ + lv+q+ vlf+gt+rdn++   +  ++ed+++Aak A ih d + + p++y++++ egg  lsGGq+qR+ iARa+v++P iL+lDEatsaLD++ E+ ++e+    l+ R  t+i++aHRLstiR +d+i+v+  G++ve GtHeel+a  +g+Y+ L+
  MMETSP1174-20130828|10346_1 193 FGITAERLAMHVRDVSFEKILGQDVAWFDX--AREHR-RKLASDSVAiRALAGeRSGTSASQIVTLVVAFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGAL--GADAVDKVEGYVaaARIKSLWDQQPAIAALDES-KG---ATLDDVQGSLEFRNVRFAYpMRPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEAldglLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIArAGGHYRGLV 686
                  555555666666666666666666666653..33333.33334444434455504556777889999999999*************9999999999999998888888888899999*********************************************99999998887778888899**************999865544444444444..456777787766226999999988888887722.22...223568*************445689999***************************************************************************************************96777899****************************************************99873333699**************************************9956789*9997 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.29        21     660     685 ..       2      28 ..       1      29 [. 0.85
   2 !  272.2   1.8   3.1e-83   2.2e-81     234     679 ..     229     683 ..     170     688 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.29
    TIGR03797 660 GrvveqGsyeeLla.keGlfaelarRQ 685
                  Gr+ve+G++eeL+   + l+a+l++ Q
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVvVDSLYATLVNLQ 28 
                  9***********975788999998765 PP

  == domain 2    score: 272.2 bits;  conditional E-value: 3.1e-83
    TIGR03797 234 dLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvde....ekvdpgkLsGaievdrvtFrYe.kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDi.kamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeG.lfa 679
                   Las + +++++    sg+  +++++ ++    +++ +  s++++lv + ++ ++++ +++   +  + ++  l+ +++  g++ + i  i  +   g e+ a+ +++++ +   ++ +k+ +i+ l + + +   + +    +++a+ l+++ ++++++ +a    +   + ++ +l +  ++ ++   + +r+k +++++p +++    + ++ ++++G++e ++v F+Y  +  + v   ++l+i +G+ va+vG+SG+GKSt ++l+  F  P++G+vl DG+d+++l v+  R+q+G V Q+  l+ g+i +ni  g++  + ++  +aa++a +  Di  + P    T + egg +lSGGQ+QR+ iAra+vr P+ill+DEATSALD ++ ++V e+l+ l    + t iviAHRLSTir+ad+i+v+ +Gr+ve+G++eeL+a+ G  + 
  MMETSP1174-20130828|10346_1 229 KLASDSVAIRALAGERSGTSASQIVTLVV---AFGVAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAAldesKGATLDDVQGSLEFRNVRFAYPmRPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPgASSEDIENAAKLANIHWDIvGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlkarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAGgHYR 683
                  46666666666666666666666666554...5799*************999887777777777777788899999********************************************************99888888899999999999*********99998888888888888888888888777778888888877776431111334456899************6245678*********************************************************************************99999******************8369*********************************************************998744335677**********************************97651555 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.49        35     545     579 ..       2      37 ..       1      43 [. 0.82
   2 !  255.9   1.2   2.5e-78   1.8e-76      81     568 ..     198     687 ..     157     694 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.49
    TIGR01192 545 grliekgsfdeliq.kdgrfakllrasgllieeear 579
                  gr++e g+ +eli   d  +a+l++  g ++e ea+
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVvVDSLYATLVNLQGAVLEGEAT 37 
                  9**********9862577888899999999888876 PP

  == domain 2    score: 255.9 bits;  conditional E-value: 2.5e-78
    TIGR01192  81 drlahgrratllteafgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrt..kegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvld...wwalasglnriastislviilvigtvlvkkgelsvgeviaf...igfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkgavefrdisfefans.sqgv.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaas.dfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk..nrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdg.rfakllr 568
                  +rla      + + +f +i+   ++w +     +    l   s ++ +l  e   +  + +v+l++   va++  ++++lv+  lgi+ ++ + ++m+     +  a+  +   +    vs++i n+  + s+     e  al +fte+l       ++     al  g+ + a   +      i ++l ++ge++  e++a    + f  + +g l          + a a+++ ++d + ++   +e    + l++v+g++efr++ f ++      v   + +++ ag+tva vgp+g gk+t ++l++r ydp++g +l+dg+di+ ++    r+ i  v q+  l+  +ir+ni+ g+ +a+ e++ +aak a  + d++ k  ++ydt+vge g +lsgg++qr+aiarai+++  il+ldeatsald ++e  v++a+d l k  +rtt++iahrlst+r+ad ++ + +gr++e g+ +eli + g ++  l+ 
  MMETSP1174-20130828|10346_1 198 ERLAM----HVRDVSFEKILGQDVAWFDXAR--EHRRKLASDSVAIRALAGERSGTSASQIVTLVVAFGVAFSQSWQMTLVM--LGIIPIIATAFMMQIKfvNQSTASSLDATNDAGGTVSEAILNIRTISSFG---LERVALSRFTEQLAIPLEHFIKkgtITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVilcVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAALDESKG-ATLDDVQGSLEFRNVRFAYPMRpDHEVyTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAGgHYRGLVS 687
                  44443....3445678888888888876532..2233444444455666667778888999***************988765..67777766666666431134445556667777889***********9986...6889********97665555541226799999***99999999999*************999877622257888888888654444445566889999**********9999765.57*****************9752344515799*******************************************************************************************999885777788899********************************************************9652278****************9999999************9886516666655 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.4   2.1e-78   1.5e-76     275     690 ..     255     676 ..     233     681 .. 0.86

  Alignments for each domain:
  == domain 1    score: 256.0 bits;  conditional E-value: 2.1e-78
    TIGR03375 275 vllfllvialiggplvlvplvavplvllvglllqkp.lsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmG...gLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklp..vereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvt.efvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                  +++   v +  ++++ lv+l ++p++ ++++++q + +++++++sl + +   +++ e++ ++ ti   + e+ + +++ + +a   +  +k  +++al   + +++   +      + + l   ge+t     ++i +v+ ++  l+ l+  a   +    a++ ++sl    +++      +e++ ++ ++++G++e++nv+f+Yp + ++++   ++l+i +G  va +G  G+GKst  +l+ ++y+p++G+vlldg+di+ ++++  r++ig+v+q+++Lf Gt+rdNi +g+p a+ e++ +aa+la ++ ++v k p+ +d+q+ge+G +LSgGQ+q +a+aRa+++dp+illLDE tsalD++se+ + e+L  ll+  ++T ++++Hr s ++ +d+i+v+++Griv +G+++e+++
  MMETSP1174-20130828|10346_1 255 LVVAFGVAFSQSWQMTLVMLGIIPII-ATAFMMQIKfVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSeimAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSL---WDQQpaIAALDESKGATLDDVQGSLEFRNVRFAYPMRpDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIA 676
                  45555667777889999988888876.55666665516778888899999999*********************************************999999988765555555666777889999966222677799999999999997776555555555555555...4333113345667778899***************97725567789*************************************************************************************************8689****************************************************************99889*********************************99886 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   1.2     2e-73   1.4e-71     128     528 ..     250     659 ..     147     660 .. 0.88

  Alignments for each domain:
  == domain 1    score: 239.8 bits;  conditional E-value: 2e-73
    TIGR02857 128 avivplvilaav.ltadwisalillltlPlipi.FmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseey.....rerTmevLriAfLSslvLellatlsvAlvAVyiGlrll.agkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragld.elvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528
                  + iv+lv+++ v + ++w+ +l++l  +P+i   Fm+ i + +++ +   l+a++  +g + + +  + t+  fg ++ + ++ ++          ++ T+  L   f        +a ls A  A yi   l   g+++++e + v+l +      l  lga+  +k eg  aa+ + ++ d+++++ a +++  a+ +    sle++nv +ay+ r   ++ ++++lt+++g++va vG+SG+GKst ++l+ +f +p  Ga+l++g+++++l+ + +r+qi+ v+Q+P+lf gt+++ni  ++++as++++++a++ a+++ ++v + p+ ++t++Ge+g +LSgGq+qR+a+Ara++rd ++lllDE t++LD ++e  v+eal+ l+  ++rt++++aHrl+++++adkivv
  MMETSP1174-20130828|10346_1 250 SQIVTLVVAFGVaFSQSWQMTLVMLGIIPIIATaFMMQI-KFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPlehfiKKGTITALGQGF------GQFAVLSAAGFAYYIAAILFeRGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAALDESKGATLDDvqgSLEFRNVRFAYPMRPdhEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLkaRQRTTIVIAHRLSTIRHADKIVV 659
                  5788999888662679***************98466666.6677778899*************************998876666655433300002444555554444......568999**********9999889********9999997777899*************************777666555544444333468***********8776678********************************************************99999**************************************99659****************************************************************9855789******************96 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.2        85     684     706 ..       2      25 ..       1      27 [. 0.78
   2 !  218.7   0.0   4.9e-67   3.4e-65     207     706 ..     180     686 ..     127     688 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.2
    TIGR01193 684 GkiieqGshkellk.enGfyasli 706
                  G+i+e+G+h+el+   +  ya l+
  MMETSP1174-20130828|10346_1   2 GRIVEEGTHEELIVvVDSLYATLV 25 
                  99*********9862467777776 PP

  == domain 2    score: 218.7 bits;  conditional E-value: 4.9e-67
    TIGR01193 207 ilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfld..lsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefk..ekkkltelenlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddi.eklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellken.Gfyasli 706
                  + q v ++++   + + + rl++++     + ++   +++f   r  e   +++  s  i ala           ++++v+ g v   q  ++ l++l  iP+ a   ++  k  ++    +++a+     ++ e +  i ti s++ e  + ++ ++++a  le+ +k     a  q       l+ + +  ++ a+l  r+++t  ++++  + + +    l  +        +  va  r+  ++  +      ++ k ++l  ++g++e+ +v + y +   +ev   ++l+i + ++++ vG sG Gkst ++l+ +f++++ G +ll+g+++kd++ +  rq i  + qeP++f G+i +n+  g k+++s e+i++a ++a+i+ di  k+p  y+t++ e + ++sgGqkqr+a+ara++ d k+l+lde+ts ld+  e+ +   ++ llk +++t i +ahrls  +++dki+v+ +G+i+e+G+h+el+++  G+y+ l+
  MMETSP1174-20130828|10346_1 180 AAQFVGNFLQRCCFGITAERLAMHVRDVSFEKILGQDVAWFDXAR--EHRRKLASDSVAIRALAGERSGTSASqiVTLVVAFG-VAFSQSWQMTLVMLGIIPIIATAFMMQIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAalDESKGATLDDVQGSLEFRNVRFAYPMRpdHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYG-KPGASSEDIENAAKLANIHWDIvGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVqeaLDGLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAgGHYRGLV 686
                  556666666666666666666666666666666666666665544..444555555566666665443333330033344444.4456888999999999999999999999999999999999999999**************************************99999999999999999****************************9999999999999988888888899******999977655431133345789999*************9963379*******************************************************************************8876.89*****************998469*************************************************998653337789******************************************97526887775 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3   0.9   6.8e-65   4.8e-63     133     542 ..     259     676 ..     186     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 211.3 bits;  conditional E-value: 6.8e-65
    TIGR01842 133 llvvfllhpylGllalvgavvlvalallnea.atkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiag..silvgra.LaPid.qaievWkqfsaarkaykrlkelleelpa.....reealklPepegelevenvslvppe.ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvh.elilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                  + v f+ + +   l+++g++ ++a+a++ ++ + +++++++  a+  a  ++++a  n+  i ++g+ + + +r++++ +  l++  +    ++  +++ +++ + +      + a l  +geit   i+a    ++ g + L+ +   a+++   ++aa    +r+k+l ++ pa     +++  +l +++g+le  nv ++ p    +++ +g+++++ aG+++a +Gpsg Gks+ ++l+   + p++G v lDg+d+k      + ++iG + q+  Lf Gt+ +ni+  +  a +e++ +aakla++h +++ ++p+ Ydt++gegG +LsgGq+qRia+aRa+ +dPk+++LDe  + LD++ e  + +al   lkar++t++vi+hr s ++ +dki+v+ dG++ + G++ee+++
  MMETSP1174-20130828|10346_1 259 FGVAFS-QSWQMTLVMLGIIPIIATAFMMQIkFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVilCVMFGSIgLGALGaDAVDKVEGYVAA----ARIKSLWDQQPAiaaldESKGATLDDVQGSLEFRNVRFAYPMrPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGlLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIA 676
                  444444.578888999999999999988775277888889999999999******************************999999999998888888888888777777788899999999999988766531144555543555431455555555544....4666666665541111133447899************998861678999****************************************************************************************************89999***********************************************************86379*************************************9986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.3   1.2e-58   8.7e-57     139     530 .]     251     648 ..     235     648 .. 0.83

  Alignments for each domain:
  == domain 1    score: 190.7 bits;  conditional E-value: 1.2e-58
    TIGR02868 139 vvalaavalialls..vaaalvlaaallvalvvaplvs.lraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLa.dwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                   ++ ++va+  ++s  +++ lv++ ++   +++ +++  ++   ++ ++   + +     + +++ +  ++  +G    +l +  e+ +  ++   ++ + +alg++  ++a+ +a+  a  ++      g+++   + +++L+ +     l al a a+   +   aa+Ri+ + d+++  a+ ++ + +++ + + +le+r+++++yp  +   v +g++l++++G+ va vG+sG+GKst ++l+ ++ dp++G v+ldg+++++l+ s  r+ + ++ q++ lF  t+r+N+  ++p a+ e++++a + + ++ d + ++pd +dt++gegg +lSGG++qR+a+ARa++ d ++llLDE t  LD + e+ + e+L      ++rt+++++hrl
  MMETSP1174-20130828|10346_1 251 QIVTLVVAFGVAFSqsWQMTLVMLGIIP--IIATAFMMqIKFVNQSTASSLDATNDAGGTVSEAILNIRTISSFGLERVALSRFTEQLAIPLEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMFGSIGLGALGADAVDKVEGYVAAARIKSLWDQQPAIAALDESKGATLDDVQGSLEFRNVRFAYPMRPDheVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDglLKARQRTTIVIAHRL 648
                  4444455554445400555554444443..3333333203333444444445566677889999999999999*****99999999999999999999*********999888888877777777788999999888888889988888899999987777778888999*********88888888777788888999***********877667*****************************************************************************************************9456678*************************************************9987766665334456788999***86 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   6.4e-45   4.5e-43      13     233 ..     462     677 ..     447     682 .. 0.86

  Alignments for each domain:
  == domain 1    score: 145.2 bits;  conditional E-value: 6.4e-45
    TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaa.lwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                  ++e+ + +nl i++ k +a++GpsGcGkst ++ + r+ d       +G+vll+g+di d    v  +r+++G+v q+p  f  +i dn++yg      +d ++  ++++     ++ + d+  +++ + +++LsGGq+qr++iara+  +P++lLlDe tsaLD ++ + ++e ++ L k    t +++ h ++ ++r +dk+++f++G++veeg+ e+++ +
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPS-----AGAVLLDGTDIKDL--KVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHWDIVGkFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKArqRTTIVIAHRLS-TIRHADKIVVFTDGRIVEEGTHEELIAR 677
                  6788999*********************************98.....9**********987..66789************************9766655666666665555555554267999999***************************************************986543478889999996.7899******************999876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   1.5e-42     1e-40    1266    1514 ..     429     682 ..     407     689 .. 0.88

  Alignments for each domain:
  == domain 1    score: 137.0 bits;  conditional E-value: 1.5e-42
    TIGR00957 1266 apwqieetappsswpksgrvefrnyslry..redldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpf.sqysdeevwlalelahlk.dfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellqqrgify 1514
                   a   ++e++       +g +efrn  + y  r+d + v   +n+ti  g+ v  vg +g+gks+    + r  + + g + +dg +i ++ +   r ++ ++ q+pvlf g++r n+       s e++  a +la ++ d+v   pdk d +  egg +ls gq+q + +ara++r  kil+ldeat+a+d +++ ++q ++   ++  + t + iahrl ti    +++v+  g + e ++  el+++ g  y
  MMETSP1174-20130828|10346_1  429 AIAALDESKGATLDDVQGSLEFRNVRFAYpmRPDHE-VYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGkPGASSEDIENAAKLANIHwDIVGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAGGHY 682 
                   55566777777777789*******998883355544.7899************************999************************************************9754145799***********997899***********************************************************99766422789999********************************9988666 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0   3.6e-42   2.5e-40      12     223 ..     469     680 ..     463     708 .. 0.86

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 3.6e-42
    TIGR01186  12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkek.alealklvdl..eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPan 223
                  ++l i  G  + ++G+sG+Gkst v+l++r+ +P+aG +l+dG di +++        r++i++v q+  lf   ti dnis+g   +  ++ e   k a      v+   ++y  +  +   +lsGG++qr+ +ara+  +P++ll+dea sald      +q+ l  l k  q+t + i+h l  ++r +d+iv++ +G iv  Gt +e++     
  MMETSP1174-20130828|10346_1 469 MNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWY----RQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENAAKlANIHWDIVGKfpDKYDTQVGEggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLS-TIRHADKIVVFTDGRIVEEGTHEELIARAGG 680
                  6899******************************************99987776....9**********9997.69********9887777666655513334556664445555555444458*************************************************************6.79**********************9876555 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   6.6e-39   4.7e-37      18     223 ..     464     675 ..     447     682 .. 0.87

  Alignments for each domain:
  == domain 1    score: 125.9 bits;  conditional E-value: 6.6e-39
    TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveel.LelvglsgseekyPg.......qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiY 223
                  ++ + ++l++ +g  v+++GPsGCGk+t +++i  + +++aGa+ll+g di +l ++  +++ G+v q  +Lf   t+++ni+yG  +   +  e a++++++  ++vg     +ky +       qlsGGq+qr+a+ara++  P++LLLDe  saLD k    ++e l  l +  + tti+++h     +  aD+ivv  +g+i   gt ee+ 
  MMETSP1174-20130828|10346_1 464 EVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSwyRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIhWDIVGK--FPDKYDTqvgeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRL-STIRHADKIVVFTDGRIVEEGTHEELI 675
                  5667899********************************************99876533789***********86.9*********999988888888876652799984..334443311133348***********************************9999999*****************76.5799******************99986 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0     6e-36   4.2e-34       2     192 ..     482     678 ..     481     687 .. 0.86

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 6e-36
    TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkea.Lelv.....qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeeP 192
                  +GpsG+Gk+t ++l+  + ++++G +lldg+d+   +v+ +++++++v q+  Lf   t+ +n+++g      +  e +++  ++  ++v     + ++      +qlsGGq+qr+a+ara+v  PkiLLlDe+ saLD k    +q+ l  l +    t+++++h     +  +d+i+v+ +G+i+  g+ ee+ +  
  MMETSP1174-20130828|10346_1 482 VGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKdlKVSWYRQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENAAKLANIhWDIVgkfpdKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRL-STIRHADKIVVFTDGRIVEEGTHEELIARA 678
                  7********************************73368899**************7.59********9887777777777776652345431122223333344589***********************************************************76.589*********************998765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   7.8e-36   5.5e-34      15     220 ..     465     676 ..     459     683 .. 0.89

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 7.8e-36
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveell.elvqleklgdryps.......qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                  +   ++l+++ G+ va++GpsG Gkst +++i  + +p +G +ll+G+d+  +kv   +++iG+v q+  lf   t+rdni++G      +  +  ak+ ++  ++  + k+ d+y +       qlsGGq+qr+a+ara+  +p++lllde  +ald+k  + +++ l  l +  + tt++++h  + ++  ad+ivv+ +G+i + g+ ee+  
  MMETSP1174-20130828|10346_1 465 VYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSwyRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIHwDI--VGKFPDKYDTqvgeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLS-TIRHADKIVVFTDGRIVEEGTHEELIA 676
                  556789********************************************98776433899***********85.9*********999999999999999975144..5689999976333333369**********************************************************876.6889****************9999865 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.2e-13   1.6e-11       2      87 ..     448     532 ..     447     560 .. 0.90
   2 !   68.1   0.1   2.3e-21   1.6e-19     145     233 ..     587     674 ..     572     680 .. 0.94

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 2.2e-13
    TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqe 87 
                  le++n++  yp   ++++   +nl+i  G+ va +G+sG Gkst ++ i+r+ ++s g++ll+g+++++l   ++   r++ig+++qe
  MMETSP1174-20130828|10346_1 448 LEFRNVRFAYPMrpDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDL---KVSWYRQQIGLVSQE 532
                  6788888888753379999************************************************966...5778999******98 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 2.3e-21
    TIGR02315 145 qLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                  qLsGGq+qR+aiaRa++++pk++l DE +++LD ks + v ++l  + k ++ t+iv  H+++   ++ad+iv + +g+iv +g+ +el
  MMETSP1174-20130828|10346_1 587 QLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTI-RHADKIVVFTDGRIVEEGTHEEL 674
                  8*************************************************************976.68*************99999887 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   1.9e-34   1.4e-32       2     224 ..     448     679 ..     447     684 .. 0.87

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 1.9e-34
    TIGR03864   2 leveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeal.arlGvvfqqstlDldlsveqnlryh...aaLhGlsraeaeerieealarlglaeraeekvr....eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                  le ++++fay  r   ++  +++lt++ g+ va +Gp G Gkst ++l+ r y+ ++g + + G+d+++ +++   +++G+v q++ l    +++ n++y    a+ + + +a+  ++i+  +   ++ ++ +++v     +L+GG+++r+ iara++ +Pk+LLlDeat  LD++s + ++e++  l ++++ + +   h +  ++++d++vv+  G+++ +G+ +el a+a+
  MMETSP1174-20130828|10346_1 448 LEFRNVRFAYPMRpdhEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYrQQIGLVSQEPVLF-GGTIRDNISYGkpgASSEDIENAAKLANIHWDIVG-KFPDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIARAG 679
                  778888888876522278999************************************************998876268********995.579*******6333667777777777777655543.5678888888633337***************************************************99999******************************998776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.5   4.6e+02      23      50 ..     234     262 ..     215     299 .. 0.59
   2 !  108.1   0.0   1.4e-33   9.9e-32      10     208 ..     462     666 ..     448     670 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.5
    TIGR01277  23 aGervailGe.sGaGkstllnliaGflep 50 
                  +  + a+ Ge sG+  s +++l+  f   
  MMETSP1174-20130828|10346_1 234 SVAIRALAGErSGTSASQIVTLVVAFGVA 262
                  55555556644666666666666665443 PP

  == domain 2    score: 108.1 bits;  conditional E-value: 1.4e-33
    TIGR01277  10 ykhlplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqniglGlkpglk.lnavqkekvedvarqv.G.i.adylerlpe...elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  +++++  ++l++ aG+ va +G+sG Gkst ++li  f  p  G++ +++ d   ++++ y++ + ++ qe  lf   t+r+ni+ G kpg    + ++  k+ ++  ++ G   ++y  ++ e   +lsGGq+qr+a+ar +vr+  illlde  sald k  + +   +  l + +++t ++++h+ls  ++ a+++vv +dG+i 
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIkdLKVSWYRQQIGLVSQEPVLFGG-TIRDNISYG-KPGASsEDIENAAKLANIHWDIvGkFpDKYDTQVGEggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLST-IRHADKIVVFTDGRIV 666
                  45566779*****************************************88752267899***************85.9********.5665505556677888888764243224455555444458**********************************9999999999*****************97.5679**********96 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   7.5e-33   5.3e-31      23     231 ..     468     677 ..     460     682 .. 0.86

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 7.5e-33
    TIGR02314  23 nvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtel.lalvg.lsdkkdsyps....nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifsh 231
                   ++l +p+g+ +  +g sg gkst ++ ++ +  p+ gav++dg+d+  l+   +   r+qig++ q   l    t+ +n++     +++   +   k++++   +vg + dk d+       +lsggqkqr+aiara+  +pk+ll deatsald  + + + e l  + +  + t ++i+h +  +++  d++ v ++g+++e+gt  e++++
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLK---VSWYRQQIGLVSQEPVL-FGGTIRDNISYGKPGASSEDIENAAKLANIhWDIVGkFPDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEELIAR 677
                  689*****************************************9988886...5678*********9755.5689*****9877655444444445555552689995679999875422237**************************************************************9975.7999*************9998875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   1.2e-32   8.7e-31      22     228 ..     464     675 ..     445     684 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 1.2e-32
    TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthl..ppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadal.klvq.lsd.aaarl...paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly 228
                   v   + l+i aG+ +a +G+sG+Gk+t ++++  f  ++ G +l+ ++d+  l    y+++++l+ q+  lf   ++ +n+++G       + + a ++a+    +v+ + d + +++     qlsGGq+qr+a+ara+v +p++lllde  sald++    v+e l  l +     t++ ++h r  ++  adki ++ +G++++ G+ ++l 
  MMETSP1174-20130828|10346_1 464 EVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLkvSWYRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIHwDIVGkFPDkYDTQVgegGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIV-IAH-RLSTIRHADKIVVFTDGRIVEEGTHEELI 675
                  5778899********************************************87522689**************85.9********9887777776677777653144442333133333112469**********************************************9998887776.455.77899*******************99886 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.0   2.9e-32   2.1e-30      10     204 ..     462     658 ..     456     660 .. 0.86

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 2.9e-32
    TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkev.lekvgl.ekklkkki....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekadrvi 204
                  d+e+ + ++l+i +G++va vG sG+GKst + ++ ++ +++ g v+l+g++   +k   + + +r+++g + q+  L    t+++n++ +      +  e+  k+ ++  + vg    k ++++     +lsgG+kqR+a+ar+++++++++l DE t++LD+k++ +v e l+ l k + +t i++ H  +  ++ad+++
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTD---IK-DLKVSWYRQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENAAKLANIhWDIVGKfPDKYDTQVgeggIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlKARQRTTIVIAHRLSTIRHADKIV 658
                  688999**********************************************...44.5667899**********99986.79********9988887777766666551556665455666666333368*******************************************986266789****************998 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   4.8e-32   3.4e-30      16     223 ..     469     678 ..     462     709 .. 0.86

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 4.8e-32
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.......rriseekvielL.giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                  ++l++p+   +a  G sG+Gk++ ++li     p++g + ldg+ ++d    + ++  + ++g v qe  LF   ++r+n+ YG   a++e+        +i+++ v ++    +  +     +LsGG kqR+ai+RA++ +P++Ll+De  +aLD+k+ + +   L+ l +  +   + ++H l+ + + ad++vv+ dGr+  +g+ ee++a+ 
  MMETSP1174-20130828|10346_1 469 MNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKD----LKVSWYRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDienaaklANIHWDIVGKFPdKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEELIARA 678
                  6899***999*********************************98765....6679****************86.8********9877766511111113455555555432356677778889**************************************************************9966.9*******************99875 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.0   9.5e-32   6.7e-30      23     240 ..     462     676 ..     446     689 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 9.5e-32
    TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkaria.ell.elvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaells 240
                   ++v ++++l++ +G+tva++G sG+Gkst  +l+  +  P+ G v   G d++ l+ +    +r+++ lv q+ +  +      + + g P    ++++++++ a i+ +++ +  +  + ++     qlsGGq qri+iara+  +Pk+++ldea s ld     ++ e l  l ++   + ++i+h l+ ++  a++++v+ +G+ivee +  el++
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVS---WYRQQIGLVSQEPV-LFGGTIRDNISYGKPGASSEDIENAAKLANIHwDIVgKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIR-HADKIVVFTDGRIVEEGTHEELIA 676
                  57899*************************************************99876...57899****99864.34444444456689**************999723331334555566667789**********************************************9999999999*******986.69*************988777665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   7.3e-31   5.2e-29      18     219 ..     463     665 ..     448     666 .. 0.89

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 7.3e-31
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavg.lee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  ++v   +nl+i +g  v + GpsG+Gk t + li  +     G + + g+++k++   ++   r++iG++ q+  l+   t ++n+  +   +++   ++a++ a+     vg + +    ++     +lsgGqkqr+aiara+v  Pk++l de t+ald+ks r v e l  l + +  t ++++h    +  ad+iv + dG++
  MMETSP1174-20130828|10346_1 463 HEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDL---KVSWYRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIHWDIVGkFPDkydtQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRI 665
                  578999***************************************9999998876...56788***********99986.99*******9988887777777777777777773344333356666789****************************************************************************98 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.3   3.8e-30   2.7e-28      10     219 ..     467     682 ..     461     706 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 3.8e-30
    TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeel.lelv.elkeaadkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkev 219
                   g+nl +++g+ ++++GP G GK+t ++++     P++G + + G D+   + +  R++ig+v q+  +    t r+n+         +  e+ ++ +++  ++v ++ ++ d +v+    ++sgG+++r+ +a++++ +P++l LDE t+ LD+++ r++ + ++ l k+ + t+++ +h l  +   ad++ +   G+i+ e+t eeL +r g++ 
  MMETSP1174-20130828|10346_1 467 TGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDlKVSWYRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIhWDIVgKFPDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKArQRTTIVIAHRLSTIR-HADKIVVFTDGRIVEEGTHEELIARAGGHY 682
                  689********************************************976245589**********988765.89999985432222222222233333313444345678888887455579*******************************************9988879**********9885.69********************99998765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.8e-30   1.2e-28       3     214 ..     449     663 ..     447     665 .. 0.79

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 1.8e-30
    TIGR00960   3 kfeqvskaykga.aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieer...vsaalekvGlk.dkak....alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnr.aGttvlvathdenlveskrkrvltlskG 214
                  +f++v  ay+    +    ++++ i+ G+ v +vG+sG+Gkst ++li     psaG +++ g d++ l   +v+  r+qiG+v q+  +l   t+ dn+       G+++++ie+    +++  + vG   dk      +  +qlsgG++qr+aiara+v++P++ll de t+ ld +  r + e l+ + + +  t +v +h  + + +   +++++ +G
  MMETSP1174-20130828|10346_1 449 EFRNVRFAYPMRpDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDL---KVSWYRQQIGLVSQEP-VLFGGTIRDNISYGK--PGASSEDIENAaklANIHWDIVGKFpDKYDtqvgEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKaRQRTTIVIAHRLSTIRHAD-KIVVFTDG 663
                  78899999986523457899*******************************************999766...699***********86.67789*****99876..57777776665111556689999641333311114468********************************************9975414556667778877776544.45555555 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   4.3e-30     3e-28       2     205 ..     448     656 ..     447     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 4.3e-30
    TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveev.lelvg.ledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel.nkrGttvivathdeelvervkk 205
                  +e+++v ++y+   ++e+ + ++l+i +g+ +  +G+sG Gk+t ++l+     ps+G+v ++g+d+++l+   ++  R++ig+v q+   l   t+ +n+      + +++ e   +  ++  + vg + dk ++       +lsgG +qR+aiaRaiv++P++ll De t  lD + ++ + + l  l ++r  t iv +h  + +++ +k
  MMETSP1174-20130828|10346_1 448 LEFRNVRFAYPmrPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLK---VSWYRQQIGLVSQEPV-LFGGTIRDNISYGKPGASSEDIENAAKLANIhWDIVGkFPDKYDTQvgegGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlKARQRTTIVIAHRLSTIRHADK 656
                  589*******95457899************************************************99885...889**********975.5678******9987666655555555665552466764678887762222579**********************************99999999988624556677777899988877654 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.1     9e-30   6.4e-28      15     227 ..     464     677 ..     456     679 .. 0.87

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 9e-30
    TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarve..lssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                   + +++++t PaG+  + +GP G+Gkst ++l+     p+aG+v l+g+d+k l+     +++ lv q+       ++rd +  G+    s    ++++ a++   ++++     ++        lsGG++qr+ +ara+ ++Pk+lllde t  ld ++   + +++  l  a + t++v  h l+  ++ +d++vv+  Gr+v  G+ +e++++
  MMETSP1174-20130828|10346_1 464 EVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEP-VLFGGTIRDNISYGKPGASSEDIENAAKLANIHWDIVGKFPdkYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLkARQRTTIVIAHRLST-IRHADKIVVFTDGRIVEEGTHEELIAR 677
                  578999**************************************************************86.567789********9888888888888888888888887641133333444567**********************************999999888887646677888888**985.789*****************9998776 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   6.7e-08   4.7e-06    1215    1313 ..     445     545 ..     426     560 .. 0.86
   2 !   78.7   0.0   5.6e-25     4e-23     444     637 ..     468     677 ..     465     694 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.7e-08
    TIGR01271 1215 ggqmtvkdltakyte.agravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknld 1313
                   +g ++ +++   y     + v   + +++ ag++v ++g +g+gkst +  + r+ + + g + +dg   + + +  +r+ +g++ q   ++ gt+r n+ 
  MMETSP1174-20130828|10346_1  445 QGSLEFRNVRFAYPMrPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDpSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNIS 545 
                   56666666666664314567889999****************************9873689*************************************985 PP

  == domain 2    score: 78.7 bits;  conditional E-value: 5.6e-25
    TIGR01271 444 nislklekgqllavagstgsgkssllmmilgelepsegkikhsg.............risfspqvswimpgtikdniifglsyde.yrytsvikacqleedi.allaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclcklla.nktrilvtsklehlkkadkilllhegscyfygtfselqak 637
                   ++l +  g+ +a  g +g+gks+ + +i    +ps g +   g             +i   +q + ++ gti+dni +g             k  ++  di  ++++k +t +geggi lsggq+ ri++ara+ +d  + lld   s ld  +e+ + e+    l a ++t i+++ +l  +++adki+++ +g     gt  el a+
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGtdikdlkvswyrqQIGLVSQEPVLFGGTIRDNISYGKPGASsEDIENAAKLANIHWDIvGKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKArQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELIAR 677
                  567888889999999999999999999998888898886544332222221111211566677788888899999999886433202344555666666675268999999999999999999999999999999999999999999999999888877765444443324677899999999999999999999999888888888765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   2.3e-29   1.6e-27      12     219 ..     462     674 ..     448     679 .. 0.88

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 2.3e-29
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFPvlkemlkRrgG.dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                  + ev ++++l++++g++va +G  g Gk+t ++ +   ++ ++G++ l+g+di++lk +   ++ i+ v+q   +f   t+++n+  g   ++++         +i+ +i   FP   + +  +gG +LsGGq+q +aiaRa+v +Pk+llLDe t  +     + ++++++ l k ++ + +++ + l+  ++ ad+++v+  G++v+eg++eel
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSW-YRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEdienaakLANIHWDIVGKFPDKYDTQVGEGGiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEEL 674
                  468999*************************************************99765.6788******9988876.9******99876655544444435678889999********99999978*********************************************999999999999999998777.****************99986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   2.5e-28   1.8e-26      15     235 ..     465     675 ..     459     680 .. 0.89

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 2.5e-28
    TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvG.ladkadal....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                  v  g++l++ aG+ va +GpsG Gkst ++++  +   + G + ++g  +  +k             +   r++iG+v q+  lf   t+ dn+      +      +a k a    d+vG + dk d+       qlsGGqkqr+aiara+   pk+ll+de+tsald +    v + l  l + ++ t ++++h++   r+ ad+++ f  G+iveeG  +e+ 
  MMETSP1174-20130828|10346_1 465 VYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLK-------------VSWYRQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENAAKLANIHWDIVGkFPDKYDTQvgegGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEELI 675
                  77899***************************999999*******998776666.............6789**************7.5899***99877777777777788888889***9568998875232258**********************************99888999999999999***********99885.9****************99986 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1   2.9e-28   2.1e-26      80     550 ..     197     668 ..     120     671 .. 0.70

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 2.9e-28
    TIGR01194  80 sqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtl...lilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkftykvrd.eedelnkyttalvsGlkelklnrirrlsfarsaisesavrva...dlniieilifilaktvGslllsllvGllltlaayfavidakaisasvlvllyik.Gplvqlvsilpila....rarvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde...kkqasldqattylsrlele.dkvkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                  + r+  ++r    ek+l+  +   +  r hr    l+sd   + +++      ++  + + v+ fg+a+    s+ + l+ + +i +       a++  +kf+ +      d+ n+   ++   +  l+++ i +    r a+s  + ++a   +  i +  i  l + +G++ +    G + ++aa+       ++s  + v+l ++ G +     +l   a    ++ va  r+     ++ + +p +   ++ +      d   +sle+++vr++y+     e ++   ++l+i  G+ v  vG  GcGkst ++l+  +y p  G +lldG  + d     yr+    v  +  lf   +  +    k  as ++ ++  +  +++ d v     +y t       +ls Gq++r+a+  a + +  +lllde ++  d    rv  e l   lk r +t +vi+h     + ad+++ ++dG++v+e
  MMETSP1174-20130828|10346_1 197 AERLAMHVRDVSFEKILGQDVAWFDXAREHRR--KLASDSVAIRALAgerSGTSASQIVTLVVAFGVAFS--QSWQMTLVMLGIIPI----IATAFMMQIKFVNQSTAsSLDATNDAGGTVSEAI--LNIRTISSFGLERVALSRFTEQLAiplEHFIKKGTITALGQGFGQFAVLSAAGFAYYIAAILFERGEITFSEIMAVILCVMfGSIGL--GALGADAvdkvEGYVAAARIK----SLWDQQPAIAALDESKGAT--LDDVQGSLEFRNVRFAYPMRPDHEVYT--GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNIsygKPGASSEDIENAAKLANIHwDIVGKFPDKYDTqvgegGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEE 668
                  56677778888888888888888888777763..345554444444400033444444444555555554..466665555444422....1234566677766554304455555544444443..555566555555555555444443211444455567778899****999999***99999988888888877777766655244332..334333300004556666664....5566677777666664444..466789************998888774..69*******************************************************************999985422224456665554444333333122333333444311111468*******************************************************************************97 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   1.7e-27   1.2e-25       4     185 ..     462     646 ..     459     650 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 1.7e-27
    TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi.....sgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre..eGktvvisth 185
                  + ev +g+nl++  g+++a++G+ G+Gkst ++ ++    P +G+vlldG++++  +  +   r++++lv q+p   lf  ++ +++++g    G s +++e+  + a    di     ++++ +  +   +lsgG+k+r+aia a++  p++lllde t+ ld++ ++ + e+l++l +  + +t+vi+ h
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLK--VSWYRQQIGLVSQEP--VLFGGTIRDNISYGKP--GASSEDIENAAKLANIHWDIvgkfpDKYDTQVGEggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKarQRTTIVIA-H 646
                  56899**********************************************998665..4568*********99..6*************86..67777777766666655555222334566665434448********************************************98651134455554.4 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.1   1.6e-26   1.1e-24       4     217 ..     468     678 ..     465     690 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 1.6e-26
    TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgL..eeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqeP 217
                  ++nl++  gk +a+vG sG+Gks++ + i  + d     ++G +lldg ++++l  +   ++i+l+ q+P+       ti++++      +++   ++a +l+    + vg   ++ ++ + +   +lsGG  qR+ ia a++ ++ +l+ De t++lD +++  v + l+ l + r+ + ++i+h l+ + + ad+++v+++G+ive+gt +el+ + 
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYD----PSAGAVLLDGTDIKDLkvSWYRQQIGLVSQEPVLFGG---TIRDNISYGKPGASSEDiENAAKLANIHWDIVGKfpDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTI-RHADKIVVFTDGRIVEEGTHEELIARA 678
                  799********************99888888888....689**********99955556889********96544...555555444433333333444445444455554321445666788899***************************************************************99.67********************99865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   1.4e-27   9.9e-26       3     193 ..     468     665 ..     466     675 .. 0.82

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1.4e-27
    TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp....drmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglr.eaadkrpe....qlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193
                  +++l+i  g+ ++++g sgcgkst ++li  +  p++gav l+g +i++       +++ +  +  +l   t+r+ni      + ++ + ++  ++ + h ++vg   +  d +++    qlsgg kqr+aiara+   pk+lllde   ald+ +   +qe l  +++ ++ t+++++h +  ++  +d++v++t+g  
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVswyrQQIGLVSQEPVLFGGTIRDNISYGKPGASSE-DIENAAKLANIHWDIVGKFpDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLS-TIRHADKIVVFTDGRI 665
                  689********************************************976531111344444445566678******9987665544.445566788889999996413334443223338************************************************************96.6889********9975 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   3.1e-27   2.2e-25      17     220 ..     462     666 ..     448     667 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 3.1e-27
    TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll.iskkskkeakerakellekvg.lekrinkkpse....lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  + ev++g++l i +g++va vG sG Gkst + l+  + +p++G vll+G +++ l     + +r +++G++ q   +l   t+ +n++      s++++++a++ a+   + vg + ++ + + +e    lsGG++qr+aiara+v +Pk++l de t+ ld+k+ + + e l  l k+++ + +v++h l+ ++++d+ + ++dg+++
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLK---VSWYR-QQIGLVSQEP-VLFGGTIRDNISYGKPgASSEDIENAAKLANIHWDIVGkFPDKYDTQVGEggiqLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRHADKIVVFTDGRIV 666
                  67899***********************************************99885...45555.78******65.66678******9876415667777888888766666643456666665544444**********************************************99999999**********************986 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   1.6e-23   1.1e-21      12     230 ..     462     672 ..     457     679 .. 0.78

  Alignments for each domain:
  == domain 1    score: 75.2 bits;  conditional E-value: 1.6e-23
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavr.kargeeeldllefekllkeklelleldeelleRslneG...fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                  d+e+ +g+nl++ +G+++a +Gp G Gkst ++ +   + y  ++G + l+g+d+ +l+v    r+ + l  q p+   G   +++      a + + ++ ++l   ++        +++    +  + ++ eG    sGG k+r  i +  + +Pk+ +LDe+ s lD  + ++v e ++ l +  ++++++i+h   l    + d++ v++dGriv++G  e
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIE--RFYDPSAGAVLLDGTDIKDLKVSW-YRQQIGLVSQEPVLFGGTIRDNISYGKPGASSeDIENAAKLANIHW--------DIVGKFPDKYDTQVGEGgiqLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKArQRTTIVIAHR--LSTIRHADKIVVFTDGRIVEEGTHE 672
                  68999**************************99995..678889***************985.466677899****999975555433333333202333333444444........333333333333444443447******************************************98766549999****95..6666689***************864 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0     1e-23   7.1e-22      17     225 ..     463     677 ..     446     683 .. 0.85

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1e-23
    TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevip.sll..e.farleskadvrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmeeaerlcdrlcvleagrkiaegrpdalide 225
                  + v   + +ti ag+   ++gp g+gkst  +l+  +  p+ g + + g ++   ++   r +ig+v+q   l    t+r+n+  +g+  g s+ +ie++   + +  +   ++  k d++v     +lsgg k+r+++ara++ dp++l+lde t+ ld ++  ++ e l  ll ar +t ++ +h +    r  d+++v+  gr + eg  + li  
  MMETSP1174-20130828|10346_1 463 HEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIkDLKVSWYRQQIGLVSQEPVL-FGGTIRDNI-SYGKP-GASSEDIENAAKlANIhwDiVGKFPDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLkARQRTTIVIAHRLST-IRHADKIVVFTDGRIVEEGTHEELIAR 677
                  556777899***********************************9988877614689999*********8777.567*****6.79985.7899999987541223113235888999**99644447********************************************9986899999999999975.699*****************9999965 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.6e-08   5.4e-06      22      69 ..     464     511 ..     459     539 .. 0.81
   2 !   41.2   0.1   3.9e-13   2.8e-11     150     213 ..     588     653 ..     580     662 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.6e-08
    TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69 
                  +v + ++l++ aG+ va+ G+sG Gkst ++ + + Y p++g +l+  
  MMETSP1174-20130828|10346_1 464 EVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDG 511
                  678899************************************998765 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 3.9e-13
    TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike.akargaaligifhd.eevre 213
                   sGG kqR+ iara++ d  iLLLde t++Ld++  +vv e ++  +kar  + i i h   ++r+
  MMETSP1174-20130828|10346_1 588 LSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGlLKARQRTTIVIAHRlSTIRH 653
                  69***************************************9997357777888888886234554 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   8.8e-21   6.2e-19      47     254 ..     472     674 ..     442     677 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 8.8e-21
    TIGR00955  47 vaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerve.evleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                  ++  G+ +A +G+SG GK+T ++ +           g+vll+G+ ++    +  r+  + v q+ ++++  t+r+++ +      ++++ +  k + ++ +++ +    +  dt +g  g    lSgG+++R+a+a  ++ dP++L++DE Ts LD  s   v ++L +l + + +t i+  H  s    +  dki++  +Gr+v +G+ ee+
  MMETSP1174-20130828|10346_1 472 TIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSA---GAVLLDGTDIKDlkvSWYRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIHwDIVGK--FPDKYDTQVGEGGI--QLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKaRQRTTIVIAHRLST--IRHADKIVVFTDGRIVEEGTHEEL 674
                  56789****************998876655443...46*****998761114568999999999999997.9*******99988889888888888887456655..57899*****7775..8**********************************9999999***9876145778888898764..6889***************99887 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   8.2e-21   5.8e-19      42     260 ..     468     682 ..     464     705 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 8.2e-21
    TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaer.rkrveeqlelvg.laeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaney 260
                  +++l++  G  + ++G sG Gks+ ++ + ++   s G vl+       d+  ++ +       +++ +v q+  l+   t+++n+++G   +   + e   k ++ + ++vg + +  d++vge    lsGG +qr+ +ara+  + +ill+de  sald      +q+ l  l k  ++t + ++h l   ++  ++i +  +Griv  gt ee++++   +y
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGT----DIKDLKVSWY----RQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENaAKLANIHWDIVGkFPDKYDTQVGEggiqLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLS-TIRHADKIVVFTDGRIVEEGTHEELIARAGGHY 682
                  5799***********************************998543....3434444333....368*****9987775.79********976666665551456777899*984567778888877777*************************************************************7.7999**********************9877666 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.8e-20   1.3e-18      20     229 ..     468     674 ..     463     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1.8e-20
    TIGR03411  20 dlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                   ++l++ +g+  + +Gp G Gk+t + +i     p++G vl++g+d++ lk +   r+ ig   q+p +f   t+++n++       s     +a+l++ + + + +  +    ++++ +   +Ls Gqkq++ i+  +v++pk+lllDe ++ + ++ ++ + e l  l  a++r+ +v+ h ++ +r+ a+k+ v+++G+++ eG+ +e+
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVS-WYRQQIGLVSQEPVLFG-GTIRDNISYGKPGASSEDIENAAKLANIHWDIVGKFPDK--YDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlkARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEEL 674
                  6899*******************************************999876.56888********9996.69****998877776666666666776666666666654..56777888889*******************************9999999999999883346789***********98.66888***********98875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.7e-20   1.2e-18      20     221 ..     468     676 ..     457     712 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.7e-20
    TIGR03522  20 evsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveel.ielvGlkaeqhk.kig....alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelka 221
                   + +++  G+ v f+GP G Gkst ++++  +  +++G+v ++g+d+ +  +   r++iG +   +P+     +r+ + +       ++ +   +++++  + vG  ++++  ++g    +ls G +qr+ +a+a++ dPk+l+lde t+ ld      ++e +  +  a+++t i+ +h +  ++   d++++   G+iv + + eel a
  MMETSP1174-20130828|10346_1 468 GMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSwYRQQIGLVS-QEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIhWDIVGKFPDKYDtQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlkARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEELIA 676
                  56778899***************************************9876652688899765.678778889999999977666666666777777652578999999986256544557*********************************998888888887734667899999***999986.79*************99999854 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.2   1.2e-16   8.6e-15     168     259 ..     587     677 ..     581     682 .. 0.96

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 1.2e-16
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvak 259
                  +lsGG+kqr+ +ar ++++p +ll de t +ld k+  +v eal    k+++ + ++ +h    i + +dk +++ +G iveeG+ ee++a+
  MMETSP1174-20130828|10346_1 587 QLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGTHEELIAR 677
                  69**********************************************************9999986.89******************9976 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   6.4e-19   4.5e-17      10     186 ..     460     647 ..     451     658 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 6.4e-19
    TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLs......gledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHla.rgGivllathq 186
                  R  +++++g+++++ aG++++ +Gp G GK+t + ++     p++G v l+++++++ + ++ ++   l  ++ +    ++++n+++ +   +se+ +  + l+++  +      +  d+ v     qLs Gqk+R+a+ar ++   ++ +LDE t alD+++ ++++e+l+  l+ r+ ++++ +h 
  MMETSP1174-20130828|10346_1 460 RPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGASSEDIENAAKLANIHWDivgkfpDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLKaRQRTTIVIAHR 647
                  7788999**************************************************9998877777777777777788**********999988866666666665442221124445555344448*****************************************9998774255566666665 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0012     0.086       3      46 ..     473     516 ..     471     535 .. 0.78
   2 !   48.2   0.0   3.3e-15   2.4e-13     113     200 ..     587     675 ..     575     692 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0012
    TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk 46 
                  + +G+ ++++Gp G Gk+t ++ i  +  +++G v ++g   ++
  MMETSP1174-20130828|10346_1 473 IPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKD 516
                  668999*******************************9975443 PP

  == domain 2    score: 48.2 bits;  conditional E-value: 3.3e-15
    TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeela.gegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200
                  +lsGGq+qr+ +ara+  +p++lllde  + ld+ s+  + e +  l  + +++ ++ +h l+   ++ + vv+ +gr+v +g+ ++l 
  MMETSP1174-20130828|10346_1 587 QLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLLkARQRTTIVIAHRLSTIRHADKIVVFTDGRIVEEGTHEELI 675
                  79****************************************99987514567888899***99988888889999*******999875 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.9e-18   1.3e-16      13     207 ..     463     670 ..     448     674 .. 0.75

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.9e-18
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl....kkiGsliesPalyenltarenlkvr...tlllglpes.rieev.lkivdl.entekkkak....qfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliks.fpekGitvilsshilsevelladhiGiiseGklkyekk 207
                  ++v   ++l+++  +  +++Gp G+Gkst ++l+  +  +++G +lldg ++   ++    ++iG + ++P l++  t r+n+      +  ++++++ ++ ++  +iv+   ++   +++    q+s G kqr+ ia a++++Pk+l+lde t  ld    + ++e +   ++ +  t i+ +h ls +++ ad+i + ++G++  e+ 
  MMETSP1174-20130828|10346_1 463 HEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKDLKVswyrQQIGLVSQEPVLFGG-TIRDNISYGkpgASSEDIENAaKLANIhWDIVGKfPDKYDTQVGeggiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGlLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVEEGT 670
                  5677899******************************************99876554333369**99999999986.8999986541113334443321222221223322111222222223348999******************************9999999988751566777888889******87.9*********9987665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.3e-18     9e-17     949    1149 ..     469     676 ..     456     704 .. 0.76

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 1.3e-18
    TIGR01257  949 lnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswe.eaqlemeamled.tglh.....hkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsi...wdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkn 1149
                   +n+t+   +  af+g  g+gk+t++ ++  +  p++g+vl+ g di+  ++   rq +g++ q  +lf   t+ + i +  +    s + e   ++  +  d  g        +  e   +lsgg ++++++a a+v d k+++lde ts +d  s r +    d llk r   t i+ +h +       d+i + ++gr+   gt   l  
  MMETSP1174-20130828|10346_1  469 MNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTDIKdLKVSWYRQQIGLVSQEPVLFGG-TIRDNISY-GKPGASSEDiENAAKLANIHWDiVGKFpdkydTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVqeaLDGLLKARQR-TTIVIAHRLSTI-RHADKIVVFTDGRIVEEGTHEELIA 676 
                   7899999999************************************72578889**************75.78888765.44433333223333333333331444311111334566789*************************************983334778999975.555567888765.468***********99999766654 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   4.3e-17     3e-15     445     650 ..     440     658 ..     416     665 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 4.3e-17
    TIGR00954 445 kveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye....lakevgitllsvshrksLwkyHeylL 650
                  ++ + +  + f n+  + P   ++ +   +++ ++ G+ +  +GP GcGKs    ++  ++ P  g           l+    ++++  v q P +  gt+Rd i Y +      +    d +  + L +++ + + +    +d+ v +    LsgG+kqRia+AR +   Pk  +LDE+tsA+    E  + e    l+k  + t + ++hr s +++ + ++
  MMETSP1174-20130828|10346_1 440 TLDDVQGSLEFRNVRFAYPmrPDHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYdPSAGavlldgtdikDLKVSWYRQQIGLVSQEPVLFGGTIRDNISYGKPGAS--SE---DIENAAKLANIHWDIVGKFPDKYDTqVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEaldgLLKARQRTTIVIAHRLSTIRHADKIV 658
                  45566667888899999886656677889*****************************99945566999996666444444568999********************754332..22...333345677888877777777787538888899*******************************9987765554111167889999999****99999877655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.5e-15     1e-13      18     221 ..     467     667 ..     461     677 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1.5e-15
    TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld.asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiird.lkakgvacvyishkleevkavsdtisvirdGqhva 221
                   +++l++ aG+ v++ G  G+Gkst ++++   y      G +l +g+++k  +++   r+ i ++ qe +l    ++ +ni  G+  + +  + + +++ +   +++ +   + +++v     +l +Gq+q + ia+a+ +  ++l+lde +++l  k  +++ + +   lka++ + + i+h+l  ++  +d+i v  dG+ v 
  MMETSP1174-20130828|10346_1 467 TGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPS--AGAVLLDGTDIKDLKVSW-YRQQIGLVSQEPVLFGG-TIRDNISYGKPGASSEDIENAAKLANIHWDIVGKFPDKyDTQVGEGGIQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGlLKARQRTTIVIAHRLSTIRH-ADKIVVFTDGRIVE 667
                  6889****************************99764..6**************986.5788********99875.89*******9887777677777776666677765532213334445567899****************************888888887777653799**************986.8*********9885 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.5e-14   1.1e-12     334     498 ..     462     646 ..     437     662 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.5e-14
    TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGet....vklayvdqsrdalddnk.....tvweeisdGldllklgkvevnsr......ayvgrfnfkGadqqkkvg.elsGGernrvhlakllkeggnvllldePtndldvetlraleeallef....aGcavvish 498
                  d+ ++  +++++p+g  v  +Gp G+Gkst ++li    +p +G++ +  t    +k+++  q+   + ++      t+ ++is G+   +  ++e  ++        vg+f  k   q  + g +lsGG+++r+ +a+ + ++  +lllde t  ld +  r ++eal+ +      +++vi+h
  MMETSP1174-20130828|10346_1 462 DHEVYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTdikdLKVSWYRQQIGLVSQEPvlfggTIRDNISYGKPGASSEDIENAAKlanihwDIVGKFPDKYDTQVGEGGiQLSGGQKQRIAIARAIVRDPKILLLDEATSALDTKSERVVQEALDGLlkarQRTTIVIAH 646
                  6678999**************************************998654333357888888766666654122226678999987555544444433311111156777777777776555458***********************************999999987542111456777777 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       6.6   4.7e+02      86     113 ..     289     317 ..     283     345 .. 0.73
   2 !   45.1   0.1   2.5e-14   1.8e-12      24     223 ..     473     672 ..     462     689 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 6.6
    TIGR02323  86 Glvhqnpr.GlrmevsaGanigerllavg 113
                   +v+q ++  l  +  aG+ ++e +l + 
  MMETSP1174-20130828|10346_1 289 KFVNQSTAsSLDATNDAGGTVSEAILNIR 317
                  578888777999999********988763 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 2.5e-14
    TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGanigerllavgarhyGkiraaak..wlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltr 223
                  +  G+ ++ vG sG Gkst ++ +     ++aG v  +  +    +  l  +      r + Glv q+p      +r ++s G   +    +  a +  +i+ +    + +k + +       ++sGG +qr+ iar++v  p+++++ e t  l +   r++   l gl++  + ++i+++h l+ +r  a++++v+  Gr+ve+G  +
  MMETSP1174-20130828|10346_1 473 IPAGKTVAFVGPSGCGKSTAVQLIERFYDPSAGAVLLDGTD----IKDLKVS----WYRQQIGLVSQEPVlfggTIRDNISYGKPGASSEDIENAAKLANIHWDIVgkFPDKYDTQV-GEGGIQLSGGQKQRIAIARAIVRDPKILLLdEATSALDTKSERVVqeALDGLLKARQRTTIVIAHrLSTIRH-ADKIVVFTDGRIVEEGTHE 672
                  456999*****************************998766....5444433....556889*******877534899999997655444444455556655443322556665555.336789**********************999******999999987889****************9999995.88**************874 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.8e-10     2e-08     760     953 ..     448     638 ..     415     666 .. 0.66

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.8e-10
    TIGR00956 760 fewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv....ttGvitegdrlvngrkldssFqR.siGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikll.elesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGq 953
                   e+r++ +  +++ ++  +   ++  +  Gk  A +G sG Gk t ++ + eR      + v+ +g+ +   ++l+ s+ R +iG v q+ +     t+r+ + +      ++++ ++ k   +    +++ ++ +  d  vG+ G+ L+  q++r++i+  +v  Pk +l lDe ts LD+++  ++ + l  l +a q
  MMETSP1174-20130828|10346_1 448 LEFRNVRFAYPMRPDHE-VYTGMNLTIPAGKTVAFVGPSGCGKSTAVQLI-ERFydpsAGAVLLDGTDI---KDLKVSWYRqQIGLVSQEPVLF-GGTIRDNISYGKPGASSEDIENAAKLANIHW--DIVgKFPDKYDTQVGEGGIQLSGGQKQRIAIARAIVRDPK-ILLLDEATSALDTKSERVVQEALDGLLKARQ 638
                  56677777777766654.45666667777888888888888888876644.443111023333344333...3344454442688888888855.5688888888888888888888888776664..3331466777888888888888888888888888888884.5668888888888888777776666555443 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.016       1.2     626     651 ..     469     494 ..     461     503 .. 0.84
   2 !   22.1   0.3   1.2e-07   8.3e-06     821     903 ..     580     660 ..     576     675 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.016
    TIGR00630 626 idvsiplglltvitGvsgsGkstLin 651
                  ++++ip g+ ++  G+sg Gkst ++
  MMETSP1174-20130828|10346_1 469 MNLTIPAGKTVAFVGPSGCGKSTAVQ 494
                  78899999999999999999999775 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.2e-07
    TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyiidl 903
                  ++G+    LsGG  qr+ +a+ + +      + +lDe t  L ++  + + e l+ l + +  t +vi h l  i++aD i+ +
  MMETSP1174-20130828|10346_1 580 QVGEGGIQLSGGQKQRIAIARAIVR---DPKILLLDEATSALDTKSERVVQEALDGLLKaRQRTTIVIAHRLSTIRHADKIVVF 660
                  67888999************99876...56799*************9999999999876156799***************9965 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00047     0.033     116     130 ..     482     496 ..     470     504 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00047
    TIGR00602 116 tGPsGCgKsTvikiL 130
                   GPsGCgKsT+++ +
  MMETSP1174-20130828|10346_1 482 VGPSGCGKSTAVQLI 496
                  7***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        78  (0.0190151); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.70u 0.22s 00:00:01.92 Elapsed: 00:00:01.22
# Mc/sec: 773.54
//
Query:       MMETSP1174-20130828|10353_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.093   11.2   3.1       0.25    9.8   2.2    1.7  1  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2   6.2e-05      0.25      27      82 ..      79     131 ..      64     133 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.2e-05
    TIGR01195  27 yvvrgmgkvvgrkkvkeveakaakek.......aaaaAvaavedeedelvaaiaAAvhehkrk 82 
                    ++          +kev  +a+++        ++aaA+a ++ e++e +    AA ++h+++
  MMETSP1174-20130828|10353_1  79 TSTKK---------WKEVGRQAEEDAaapggvePEAAAAA-AAHEGEEAAGSFEAAAAAHEGE 131
                  22222.........44433333222233466544444444.4677778999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 717.02
//
Query:       MMETSP1174-20130828|10356_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1275.89
//
Query:       MMETSP1174-20130828|10357_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   12.6   0.0      0.014   12.1   0.0    1.2  1  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor


Domain annotation for each model (and alignments):
>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.3e-06     0.014      35     147 ..     101     215 ..      57     230 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.3e-06
    TIGR02915  35 lvrrhePa.vvtldlGlPPdadsaseGlaaleqilaiaPdtkvivitGnddrenalkaielGaydfyqkPldadvlklivd.rafrlaeleeenrrlkkasdstaleGlitssee 147
                  l    +Pa vv+ld  l    +++  G ++ ++++a + +  + + + ndd  +  +  e+Ga   ++k   +dv++  ++ + +r++e + + rr++  +++t+ + l +s++e
  MMETSP1174-20130828|10357_1 101 LCDGGRPAdVVILDQHLDYRDGTSITGTEICRDLIAQSFEGIICISSANDDDADLQRYREAGADFCFSKEEATDVIAQQINdKLHRMHEAKIDKRRIRDDQNTTSNTRLNGSAPE 215
                  44555664499**********************999888877767777777777777888999878**********9877526778*************9999887776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.62
# Mc/sec: 1117.65
//
Query:       MMETSP1174-20130828|10360_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-13   47.6   3.7    6.6e-13   46.8   2.6    1.4  1  TIGR00861 MIP: MIP family channel proteins
  ------ inclusion threshold ------
       0.32    9.5   5.0      0.043   12.3   0.5    1.8  2  TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   2.6   3.2e-16   6.6e-13      59     216 ..       1     167 [.       1     175 [. 0.77

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 3.2e-16
    TIGR00861  59 hlNPAvTlallvlrkfplkkvvvYivaQliGailgaallylltkkalegdlavaesaaaGalavfpklssvqalvvefiltaiLvlvilaltdkreals.sgg.laplaiGllvvlivls........lgpltgtamNpARslGpalvaalvgfes........yfwvylvgPivG 216
                  h+NP ++l+ +++r +++ +  +Y+++Q++Ga++ga++++  +++ ++ ++ + +  +aG      +l s  ++++e + +++++l+ +++  + ++ +  g  lap++iG +++l++ +         g++tgta+NpA   G + +a     ++         +w y++g i  
  MMETSP1174-20130828|10360_1   1 HFNPLISLGCVCARLMTIVRGTIYTLSQTLGAYAGALVFRCSVSRDTATTYMLGAC-NAG------ELGSKGCIISECMYGLCVLLIGFGVGLNPKQGQiFGPvLAPFLIGTVLALVIWVsaningieHGQYTGTAVNPAACQGLKWAAL--SHPQlddaesisPTWYYWLGCICA 167
                  9******************************************9887777666663.666......899*************999999999874444331333599*****998876544111111116789********9999777665..333344588888799999998865 PP

>> TIGR02112  cyd_oper_ybgE: cyd operon protein YbgE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   2.1e-05     0.043      49      87 ..      70     110 ..      58     115 .. 0.69
   2 ?   -3.3   0.2       1.5     3e+03      54      64 ..     165     175 ..     157     178 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
    TIGR02112  49 lliwavcasvi.hGvGfrprkv.lwqllFsPllaliilill 87 
                    ++++c+++i +GvG++p++  ++  + +P+l  ++l+l 
  MMETSP1174-20130828|10360_1  70 ECMYGLCVLLIgFGVGLNPKQGqIFGPVLAPFLIGTVLALV 110
                  569******999*******9951344455555444444444 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.5
    TIGR02112  54 vcasvihGvGf 64 
                  +ca ++h v f
  MMETSP1174-20130828|10360_1 165 ICAVLLHTVVF 175
                  34444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 628.89
//
Query:       MMETSP1174-20130828|10359_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 746.87
//
Query:       MMETSP1174-20130828|10362_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 740.84
//
Query:       MMETSP1174-20130828|10363_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 300.28
//
Query:       MMETSP1174-20130828|10364_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|10366_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 900.63
//
Query:       MMETSP1174-20130828|10369_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|10371_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 238.43
//
Query:       MMETSP1174-20130828|10372_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   13.8   0.0      0.014   13.2   0.0    1.4  1  TIGR00122 birA_repr_reg: biotin operon repressor


Domain annotation for each model (and alignments):
>> TIGR00122  birA_repr_reg: biotin operon repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.3e-06     0.014      10      63 ..       6      63 ..       3      68 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.3e-06
    TIGR00122 10 adnefSGeklse....alglSRtavnkhiqkLreeGvdVlvvrkGYrLvpelpllnee 63
                 ad   SG +lse     l     av +++  Lre+G  + +v+ ++ L++ l+  + e
  MMETSP1174-20130828|10372_1  6 ADPVTSGAVLSEppltELMAPNSAVAELAGLLREDGFGIATVADDFPLAGDLGVTSNE 63
                 555557777776444334445679*************************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|10374_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1305.62
//
Query:       MMETSP1174-20130828|10380_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.61
# Mc/sec: 569.07
//
Query:       MMETSP1174-20130828|10381_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|10383_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.43
# Mc/sec: 221.01
//
Query:       MMETSP1174-20130828|10385_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1337.49
//
Query:       MMETSP1174-20130828|10389_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 515.18
//
Query:       MMETSP1174-20130828|10390_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-57  192.9   0.3    1.8e-57  192.7   0.2    1.0  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
    1.8e-23   80.9   0.0    3.4e-23   80.1   0.0    1.5  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
    1.8e-13   48.4   0.2    2.4e-13   48.0   0.2    1.1  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    7.7e-13   46.4   0.1    1.2e-12   45.8   0.1    1.2  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    3.3e-09   35.0   0.0    4.3e-09   34.6   0.0    1.2  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
    5.3e-08   30.9   0.0    6.5e-08   30.6   0.0    1.1  1  TIGR01990 bPGM: beta-phosphoglucomutase
    1.3e-06   26.2   0.0    1.6e-06   25.9   0.0    1.2  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
      1e-05   23.0   0.0    2.3e-05   21.9   0.0    1.6  1  TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
    0.00088   17.6   0.1     0.0048   15.1   0.0    2.1  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
  ------ inclusion threshold ------
      0.016   12.9   0.0      0.027   12.2   0.0    1.4  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
      0.025   11.8   0.0      0.039   11.2   0.0    1.2  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family


Domain annotation for each model (and alignments):
>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.2   4.8e-60   1.8e-57       2     216 ..      47     267 ..      46     269 .. 0.92

  Alignments for each domain:
  == domain 1    score: 192.7 bits;  conditional E-value: 4.8e-60
    TIGR03351   2 eLvvlDlAGttvdedglVykaleqaveaaglskteeevqeatmGkdKieairallaadg......adeekvqaifaeFeerlaelyddaevv.al..pGveeairdLrskGikvaLttGfdrevaeklleklgWsvgedvDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDtanDleaginagatlvvGvltGasdaeeLsrapathvldsvadlp 216
                  +L v+D+AGttvde+glVy++l++++ aagl  +e +++  ++G++K e++ + +++        a+ + ++ i   Fe++l+e+y +   + al  p   + +++Lrs+G+kvaL+tG+ r+ + ++le+l+  +   vDa ++++dv +gRP P++++r +e   v+dvr v++aGDt++D+ +g nag++ v+Gvl+Ga ++e+L+  +a  +++++a lp
  MMETSP1174-20130828|10390_1  47 KLLVCDMAGTTVDEGGLVYTTLRESMCAAGLEVSESDMHP-WHGAAKEEVVDHFVGVRNpeasvaAKADLAASISGGFEQQLEEAYLAPGSTlALidPTLPDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVDM--VDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVAKAGDTERDIGEGFNAGCGQVIGVLSGADSEEALRLVGADTIVSNIARLP 267
                  799***********************************99.*************98765555665566667778899********976544313345899********************************97777..**********************************************************************************998 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   9.1e-26   3.4e-23       3     204 ..      47     244 ..      45     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 9.1e-26
    TIGR01422   3 eavilDWAGttvDfGslaPvkaFveaFaekgvqisleeaRkpmGleKidHirallklpevaerwqakfgralteadve.elyeafepllleklaeyaelipgvlevvaklrargikigsttGYtrevldvvlkaAaaqGyrpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDtvpdieeGrnAgvwtvgvilss 204
                  + ++ D AGttvD G l  ++   e   ++g+++s  ++    G  K + + +++ + + +++  ak      +a ++  + +++e+  l+  ++ a   p++ +  a+lr+rg+k++ +tGY+r++  ++l++ +     +d  ++a+dvp+gRP P+m+ + ++ l vedv++v K +Dt  di eG nAg+  v  +ls+
  MMETSP1174-20130828|10390_1  47 KLLVCDMAGTTVDEGGLVYTT-LRESMCAAGLEVSESDMHPWHGAAKEEVVDHFVGVRNPEASVAAKADL---AASISgGFEQQLEEAYLAPGSTLALIDPTLPDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVD-MVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVAKAGDTERDIGEGFNAGCGQVIGVLSG 244
                  67899************9776.56778889*********************9998776666655554433...333330455678888899999999999*******************************99988775.68999*************************************************887544554 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.2   6.3e-16   2.4e-13       2     210 ..      50     267 ..      49     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 6.3e-16
    TIGR01449   2 lfDLDGtLvdsAPdlaaavnkaLaalgsavltleevagfignGvdvlveRvLavageerdaer....vaelrklFlrhYeev....aeeltsvfpgveaaleaLrakGlrlglvtnkPealarplLellglakylevligGdslaqrkPdPePLllaaerlgvepaqmvy.vGDsevDiaaArAAGl.psvlltyGYrygeaveelpadvlldsleell 210
                  + D+ Gt vd    +  +  + + a g+ v ++  + ++ g   + +v+  + v+ +e  +++    +a + + F+++ ee       +l+ + p   + +  Lr++G++++l t  P++l   +Le l++ +++++ i+ ++++  +P P  +    e l+ve + +v   GD e Di     AG+ ++++++ G   +ea    +ad++++++  l+
  MMETSP1174-20130828|10390_1  50 VCDMAGTTVDEGGLVYTTLRESMCAAGLEV-SESDMHPWHGAAKEEVVDHFVGVRNPEASVAAkadlAASISGGFEQQLEEAylapGSTLALIDPTLPDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVAkAGDTERDIGEGFNAGCgQVIGVLSGADSEEALRLVGADTIVSNIARLP 267
                  679999999999999999999999999875.67889*********************99999856664445556666655541111567777889999999**************************************************************988877538***************456789******************99998775 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   3.2e-15   1.2e-12      79     195 ..     144     262 ..     126     268 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 3.2e-15
    TIGR01454  79 gvpellaelradglgtaiatgksgprarsllealgllelldevigsdevarpkpapdivrealdlldvaaeaav.mvgdalidlasaraagvaavaa.lwgetdeaellaarpdvvlrk 195
                    p+ +aelr++g+++a+ tg       ++le l +++++d  i +++v+r +p+p +v++ +++ldv   ++v   gd+  d+  +  ag   v   l g  +e  l+  + d ++ +
  MMETSP1174-20130828|10390_1 144 TLPDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVaKAGDTERDIGEGFNAGCGQVIGvLSGADSEEALRLVGADTIVSN 262
                  578999**************************************************************987766268**************9887550555555668999999988876 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.2e-11   4.3e-09       4     164 ..      49     217 ..      46     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 1.2e-11
    TIGR02009   4 viFDlDGvlvdtaslHakAwkaladklglefdeqineslkGlkredivrailksrgskelseekieqlaerknelyrellr.......ltgaevlpgienlleelkkkkiavalgsss..knakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvkpeecv 164
                  ++ D+ G+ vd   l ++  ++ + + gle +e  ++  +G+ +e++v +++  r ++e+s  ++++la++ +  +++ l+        t a + p++  + +el+ ++++val +    +   aiL++l++ d++da ++a++v +g+P P +  +  e L+v+  + v
  MMETSP1174-20130828|10390_1  49 LVCDMAGTTVDEGGLVYTTLRESMCAAGLEVSESDMHPWHGAAKEEVVDHFVGVR-NPEASVAAKADLAASISGGFEQQLEeaylapgSTLALIDPTLPDYFAELRSRGVKVALNTGYprQLQGAILERLNMVDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTV 217
                  577***************************************************6.88888888889998877766666553331123333456689999*************98875439999****************************999999999999876655 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.7e-10   6.5e-08       4     165 ..      49     218 ..      46     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.7e-10
    TIGR01990   4 viFDlDGvitdtaeyhylawkkladelgiefdeelnesLkGvsReesleailkkakkkyseeekeelaerknekYvellke..ltpedvl....pgikelleelkkkkikialasas..knaklvleklelkdkfdaivdaaevkkgkPdPeiFlaaaeklgvspeecig 165
                  ++ D+ G  +d   + y + ++     g+e++e+  +  +G ++ee +++ +  ++ + s + k++la++    +++ l+e  l p   l    p + + ++el+++++k+al      +    +le+l++ d +da + a++v +g+P P +  + +e+l+v+  ++++
  MMETSP1174-20130828|10390_1  49 LVCDMAGTTVDEGGLVYTTLRESMCAAGLEVSESDMHPWHGAAKEEVVDHFVGVRNPEASVAAKADLAASISGGFEQQLEEayLAPGSTLalidPTLPDYFAELRSRGVKVALNTGYprQLQGAILERLNMVDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVA 218
                  789************************************************************************999987445554444112278888999***********88651155679***************************************9877664 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.3e-09   1.6e-06      97     201 ..     143     248 ..      47     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.3e-09
    TIGR02253  97 pdvvkvLleLresGyrlgliTdgltekqweklerlgvrdfFdavivseelgveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglkt.vwinrgkskk 201
                  p   +   eLr  G++++l T  +++ q + lerl++ d  da i  ++++  +P p +    +++l+v+   +v      e+Di  + n+g    + +  g +++
  MMETSP1174-20130828|10390_1 143 PTLPDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVAKAGDTERDIGEGFNAGCGQvIGVLSGADSE 248
                  56678899*******************************************************************8766689**********99845555555554 PP

>> TIGR01548  HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.2e-08   2.3e-05     112     196 ..     146     232 ..     136     233 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.2e-08
    TIGR01548 112 kelldaLtradiavavltGrpsdeadvvLdrvGldilgevrialdDaaa.kPnPraliaaaerlgadah.savfvGDtvdDiltark 196
                  +++  +L   ++ va+ tG p++    +L+r  + ++ +  i  +D++  +P+P  +  ++e l ++   +++ +GDt  Di  + +
  MMETSP1174-20130828|10390_1 146 PDYFAELRSRGVKVALNTGYPRQLQGAILERLNMVDMVDAYISAQDVPRgRPSPYMVHRLMEMLDVEDVrTVAKAGDTERDIGEGFN 232
                  6889999999********************************************************99879999*******977665 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.89   3.3e+02       2      13 ..      49      60 ..      48      68 .. 0.87
   2 !   15.1   0.0   1.3e-05    0.0048      74     149 .]     154     234 ..     139     234 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.89
    TIGR01549  2 ilfDidGTLvds 13
                 +++D+ GT+vd 
  MMETSP1174-20130828|10390_1 49 LVCDMAGTTVDE 60
                 79********96 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.3e-05
    TIGR01549  74 lagyrlgiiSngslraqklllrkled...yfelilvsdepgsKpepeiflaaleslgle..pevlhvGDnlsDieaaknag 149
                   +g+++ + ++++++ q  +l++l+     + +i+ +d p ++p+p ++++ +e+l++e  ++v   GD++ Di  + nag
  MMETSP1174-20130828|10390_1 154 SRGVKVALNTGYPRQLQGAILERLNMvdmVDAYISAQDVPRGRPSPYMVHRLMEMLDVEdvRTVAKAGDTERDIGEGFNAG 234
                  36899999999999999988888764111567899999888****************9722467888********999998 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.4e-05     0.027     101     143 ..     194     238 ..     150     244 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.4e-05
    TIGR01656 101 r.KPkpglilealkrlgvdasrs.lvvGDrldDvqaarkaGaaay 143
                  r +P+p ++++ ++ l v+  r+ +  GD+++D+  + +aG+ ++
  MMETSP1174-20130828|10390_1 194 RgRPSPYMVHRLMEMLDVEDVRTvAKAGDTERDIGEGFNAGCGQV 238
                  359**************8776661569**************9885 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011     0.039     186     254 ..     180     248 ..     169     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
    TIGR01452 186 vaaiktasgreplvvGkPsdfmleyikeklsidPartlmvGdrletdilfGkdgGlktvl.vlsGvsrle 254
                  v  +++    + +  G+Ps++m++ + e l+++  rt+     +e di  G ++G   v+ vlsG    e
  MMETSP1174-20130828|10390_1 180 VDMVDAYISAQDVPRGRPSPYMVHRLMEMLDVEDVRTVAKAGDTERDIGEGFNAGCGQVIgVLSGADS-E 248
                  555666666677888*********************99888889*********999776659999873.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 674.89
//
Query:       MMETSP1174-20130828|10398_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 271.45
//
Query:       MMETSP1174-20130828|10397_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 376.17
//
Query:       MMETSP1174-20130828|10400_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.57
# Mc/sec: 1367.68
//
Query:       MMETSP1174-20130828|10408_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1204.93
//
Query:       MMETSP1174-20130828|10403_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 856.46
//
Query:       MMETSP1174-20130828|10411_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|10412_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|10409_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1174-20130828|10406_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.48
# Mc/sec: 1944.09
//
Query:       MMETSP1174-20130828|10414_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|10416_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 248.75
//
Query:       MMETSP1174-20130828|10413_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 713.45
//
Query:       MMETSP1174-20130828|10415_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 410.11
//
Query:       MMETSP1174-20130828|10418_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 189.07
//
Query:       MMETSP1174-20130828|10417_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|10420_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|10422_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 696.90
//
Query:       MMETSP1174-20130828|10423_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|10424_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 655.06
//
Query:       MMETSP1174-20130828|10421_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.4   0.0      0.036   10.7   0.0    1.3  1  TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit
      0.024   10.8   0.2      0.034   10.3   0.1    1.1  1  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR01278  DPOR_BchB: light-independent protochlorophyllide reductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05     0.036     358     391 ..     430     463 ..     412     479 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.7e-05
    TIGR01278 358 elePelvlGtqmerhvakrldipCavisaPthie 391
                     P +v+Gt   rh++ + d+pC v + P  i 
  MMETSP1174-20130828|10421_1 430 VSLPLIVVGTLFGRHIGGKNDFPCRVNAIPRQIP 463
                  56799**********************9998886 PP

>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   1.6e-05     0.034     507     580 ..     601     678 ..     598     703 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.6e-05
    TIGR00593 507 ikvdkdylqelskelaeelakleeeiyelaGeefnlnSpkQLeev.LFe...kLkLpskkktktgystdaevLekLae 580
                  +k++k  lqe+++ l+  + +++++   l G++f+ +S  QL  v L++     + ps  k+k+   t++ +Le L++
  MMETSP1174-20130828|10421_1 601 LKLRKAHLQEYQSRLKVLISEMKRRTNPLLGHKFHFSSTAQLYLVeLYDityDWENPSAAKKKSFLQTKTIILETLEN 678
                  578999************************************998566522122334445666557777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 2064.08
//
Query:       MMETSP1174-20130828|10428_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 270.58
//
Query:       MMETSP1174-20130828|10425_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.25s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 680.94
//
Query:       MMETSP1174-20130828|10426_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-28   96.8   0.1    1.8e-26   90.6   0.1    2.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    7.9e-28   95.3   0.1    9.1e-28   95.1   0.0    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    8.8e-24   82.1   0.1      1e-23   81.9   0.1    1.0  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    6.3e-22   75.8   0.0      7e-22   75.7   0.0    1.0  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
      5e-11   40.2   0.0      5e-10   36.8   0.0    1.9  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    8.1e-11   39.5   0.2    9.7e-11   39.3   0.1    1.1  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    3.3e-05   20.9   0.3    4.3e-05   20.6   0.2    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
  ------ inclusion threshold ------
      0.028   11.8   0.0      0.043   11.2   0.0    1.4  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.1   3.4e-29   1.8e-26      61     324 ..       3     252 ..       1     259 [. 0.88

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 3.4e-29
    TIGR01179  61 kleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqka...gvkkliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdW 324
                  ++ ++++++++  v+H+aa+  v  + ++P++Y e n++  ++Lle+m++    +  +++++ss++vYg ++k+p+ E+ ++  p++ YG++k + E i   ++++ ++l  v LR+F v G     ++            +     v  +e++++f       +G   RD+ +v+D++++ +a+++   ++++ +v+nlG+ +  +v + i+ ++ + + + +v      +G++ + +a+++  +  lg+ pk   + e ++   dW
  MMETSP1174-20130828|10426_1   3 TMVKLFDKHRFTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLLETMVHRphdQRPHFVYASSSSVYGLNTKTPFAESDSVDrPASLYGATKKADEVIALSYHNV-YGLASVGLRFFTVYGPWGRPDMA----------VYKFTDRVMAKETIQVFN------NGEMKRDFTYVDDITDGIVASMKFRDANDHPQVFNLGNSEPVAVSNFIRLLEVAMDSNATVVDVGESKGEVDATYASTELSHYILGYDPKTS-MPEGLSHFIDW 252
                  67799*******************************************9762114457********************999988**********************.**************975444433..........222233333578899995......69999*********************************************************9**************************987.65555666666 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   1.8e-30   9.1e-28      65     314 ..       4     256 ..       1     261 [. 0.90

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 1.8e-30
    TIGR01181  65 verllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevr..llhistDevyGdlekddaeftettpl.aPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvle...kgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                  + +l+++++   vv++aa+  v  + ++p +++e n+    +lle++ ++ ++ r  ++  s   vyG  +k+   f+e++++  P s y a+k a + +  +y++ ygl  +  r    yGp+  p+  + ++  +++a + ++v+ +G+  rD+ yv+D + +i + ++      + +v+n+g  e   + + ++++   +d +   ++  e++   D  ya      +  Lg+ pk+++ egl + ++Wy++ 
  MMETSP1174-20130828|10426_1   4 MVKLFDKHRFTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLLETMVHRPHDQRphFVYASSSSVYGLNTKT--PFAESDSVdRPASLYGATKKADEVIALSYHNVYGLASVGLRFFTVYGPWGRPDMAVYKFTDRVMAKETIQVFNNGEMKRDFTYVDDITDGIVASMKfrdANDHPQVFNLGNSEPVAVSNFIRLLEVAMDSNATVVDVGESKGEVDATYASTELS-HYILGYDPKTSMPEGLSHFIDWYRSP 256
                  567999****************************************999888666569999*******88888..5888887637****************************************************************************9999877665221556679************************999999999999999****965443.346********************875 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   1.9e-26     1e-23      64     314 ..      10     254 ..       1     256 [. 0.76

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 1.9e-26
    TIGR02197  64 lkkveavfHegAisdTteldg..ellmenNyeyskellelca....ekevkliYASSAavYG.dseeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvk...vnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                  +++++ v+H +A              +e N+e   +lle+ +    +++ +++YASS +vYG +++++f e++++ rP  +Yg  K+  De+++ +  ++      vGlr+F VyGp     g+    v+k+++++++++++++F++      Ge +RDF+yv+D+++   +++++ +++++  +fn+G ++    ++ +  +  a++++   + +d+ e+  +     T a +e  + ++ +++++s+ eg+ ++++++ 
  MMETSP1174-20130828|10426_1  10 KHRFTHVVHLAAQPGVRYAAThpMEYVERNLECYVKLLETMVhrphDQRPHFVYASSSSVYGlNTKTPFAESDSVDRPASLYGATKKA-DEVIALSY-HNVYGLASVGLRFFTVYGPW----GRPDMAVYKFTDRVMAKETIQVFNN------GEMKRDFTYVDDITDgivASMKFRDANDHPQVFNLGNSEPVAVSNFIRLLEVAMDSN--ATVVDVGESKGEVDA--TYASTELSHYILGYDPKTSMPEGLSHFIDWYR 254
                  456777888887654433322002335778887777777654222278899***********5567889*****************97.66666454.55566689***********7....5555569***************975......5556*********883224556667788899****************9999999964..589999999544444..555555555689999**************996 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.4e-24     7e-22      71     296 ..      13     240 ..       1     241 [. 0.85

  Alignments for each domain:
  == domain 1    score: 75.7 bits;  conditional E-value: 1.4e-24
    TIGR04180  71 vdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardl...evekvvhtstsevyGtaqyvPidekhpl.qaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkav..GevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                   ++v+hlaa  ++ y+ + p+ yve n++  +++l++  +    +  ++v +s+s vyG     P  e+  + ++ s y a+k + + +als+++ + l  + +r f  yGP       +     +++++++   + + +  rdf+yv d+++g++a ++  +a    +v+n+g+   +++++ ++l++ +++++  +v     +  +k ev+  +a+++  + ++g++pk+
  MMETSP1174-20130828|10426_1  13 FTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLLETMVHRphdQRPHFVYASSSSVYGLNTKTPFAESDSVdRPASLYGATKKADEVIALSYHNVYGLASVGLRFFTVYGPWGRPDMAVYKFTDRVMAKETIQVFNNGEMKRDFTYVDDITDGIVASMKFRDANdhPQVFNLGNSEPVAVSNFIRLLEVAMDSNATVVD----VGESKGEVDATYASTELSHYILGYDPKT 240
                  5789********************************9876511144579*******************99873689************************************988777777777776665544445677889**************9888766542279**************************99875....4457888999999988888888888875 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   9.8e-13     5e-10      69     336 ..       4     259 ..       1     270 [. 0.77

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 9.8e-13
    TIGR02622  69 lekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavra..lesvkavvlvtsDkvYenkewvwgyretdalGG.hDpYsaskaaaelvvasyrksflkeankekikiasaRaGnviGGGDwae.dRlvpDviralssnkaveiRn.pkavrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeaylk 336
                  + k++++++   v hlaaqp vr + ++P+e  e n+   v+lle++ +  +++    v   s  vY  + +   + e+d +      Y a k a e+++ sy++ +  ++    +++ ++        G w + d  v      + +++++++ n  +  r + +v +   G   +a   ++d ++  + fn+G ++     v ++++  le+++ ++a++ +  +  +  e +    +++ ++  lg++p+ s+ e ++  ++Wy++ +++
  MMETSP1174-20130828|10426_1   4 MVKLFDKHRFTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLLETMVHrpHDQRPHFVYASSSSVYGLN-TKTPFAESDSVDRpASLYGATKKADEVIALSYHNVYGLAS--VGLRFFTVY-------GPWGRpDMAVYKFTDRVMAKETIQVFNnGEMKRDFTYVDDITDGI--VASMKFRDANDHPQVFNLGNSE--PVAVSNFIRL-LEVAMDSNATVVDVGE--SKGEVDATYASTELSHYILGYDPKTSMPEGLSHFIDWYRSPQRR 259
                  567888899999*********************************9866114556689999999***855.5679******9852789*****************998744..344444443.......345432444555555666677777765157779999999999994..57778999999999*****876..7777777765.5556666777777666..4567777777889999***********************76555 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   1.9e-13   9.7e-11      68     265 ..       3     201 ..       1     239 [. 0.83

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.9e-13
    TIGR01472  68 sllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpf.nprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdy....veamwlmlqqdkpddyviatgettsvrefvevsf 265
                  +++kl ++ + t +  laaq  v+ +   p   ++ +    ++lle++      ++ +f  as+s +yG  +++p  e+     p s y+a+k +   i+  y + ygl +v   +f    p    ++   k t  v    +++e++  + n + krd+ y  d     v +m +   +d+p+ + +   e  +v +f+ +  
  MMETSP1174-20130828|10426_1   3 TMVKLFDKHRFTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLLETMVHRPHDQRPHFVYASSSSVYGLNTKTPFAESDSVdRPASLYGATKKADEVIALSYHNVYGLASVGLRFFTVYGPWGRPDMAVYKFTDRV----MAKETIQVFNNGEMKRDFTYVDDItdgiVASMKFRDANDHPQVFNLGNSEPVAVSNFIRLLE 201
                  5789999*******************999988888888999************************************9987637*************************7777677888888766777777887655....34566667788999******998633337788999999*****************9986543 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   8.4e-08   4.3e-05      42     222 ..       4     200 ..       1     222 [. 0.76

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.4e-08
    TIGR01214  42 leellreikPdvvvntaAytdVDkaEseaekayavNalatenl....AraaarvgallvhiSTDYvFDGekkrpYreedetn.PlnvYgqsKlaGEvavraase....kalivRtswlygasgg.rnFvktmlrlakereelkvvadQigs..PTyakdlaevlaaller....eargvyHlanegqvSwyefaqai 222
                  + +l+++ +   vv+ aA   V  a +++ +  + N     +l     +  ++    +v+ S   v+  + k+p++e+d +  P ++Yg++K a Ev+++++ +     ++ +R   +yg  g  +  v    +++  +e ++v+++  +    Ty++d+++ ++a ++      +  v+ l n+  v   +f + +
  MMETSP1174-20130828|10426_1   4 MVKLFDKHRFTHVVHLAAQPGVRYAATHPMEYVERNLECYVKLletmVHRPHDQRPHFVYASSSSVYGLNTKTPFAESDSVDrPASLYGATKKADEVIALSYHNvyglASVGLRFFTVYGPWGRpDMAVYKFTDRVMAKETIQVFNNGEMKrdFTYVDDITDGIVASMKFrdanDHPQVFNLGNSEPVAVSNFIRLL 200
                  5677778888889999999999999999888877777765544110045556667789*********99**********9855****************99988666667779*******99983444667888889999999999987752269999999999888765566667778888887777777776654 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.3e-05     0.043      56     130 ..      11      84 ..       3     212 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.3e-05
    TIGR01777  56 egvdavinLaGepiadkrwteerkkeileSRikttealvelikka..kqkpkvlisasavgyYgeseekelteeeee 130
                  +++++v++La +p +  r+  ++  e +e  ++   +l+e++ ++  +q+p  ++ as+ ++Yg +++++++e+++ 
  MMETSP1174-20130828|10426_1  11 HRFTHVVHLAAQPGV--RYAATHPMEYVERNLECYVKLLETMVHRphDQRP-HFVYASSSSVYGLNTKTPFAESDSV 84 
                  56899********99..9***************998888888777656667.9********************9843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|10430_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-67  224.0   0.0    4.5e-67  223.4   0.0    1.3  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
      2e-52  175.4   0.1    4.1e-52  174.4   0.0    1.5  2  TIGR01360 aden_kin_iso1: adenylate kinase
    7.3e-38  128.2   0.1    1.8e-26   90.9   0.0    2.2  2  TIGR01351 adk: adenylate kinases
    4.2e-05   21.5   0.6     0.0058   14.5   0.0    3.0  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0078   13.7   0.7       0.04   11.4   0.1    1.9  2  TIGR01896 cas_AF1879: CRISPR-associated protein Cas4/Csa1, subtype I-A/APERN


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   5.5e-70   4.5e-67       1     184 [.       3     189 ..       3     190 .. 0.95

  Alignments for each domain:
  == domain 1    score: 223.4 bits;  conditional E-value: 5.5e-70
    TIGR01359   1 vvfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseesk...kflidGfPrneenleawekl.idekvevkfvlfldcseevmvkrllkrgqssGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                  v+fvlGgPGsGkGtqC+k+ ++++ +hlsaGdllr+e+k +gs + ++i+++i eGkivP++vt+ ll+++i++s ++      l+dGfPrn +n+e+w +  ++e + v+ v+ ldc+e+vmv+r+l+rg++sGr ddn  +++krl+ty++ tlp++ey+ +++ v++i++++ v++v+++v++++
  MMETSP1174-20130828|10430_1   3 VLFVLGGPGSGKGTQCTKLARDYGALHLSAGDLLRAERK-SGSSHAAVINDCITEGKIVPVAVTLALLRREIEASAKDGatpLTLVDGFPRNWDNQEGWVQGgMSEVASVDGVVLLDCPEKVMVNRILERGKTSGRDDDNVTAIQKRLRTYTDATLPILEYYAAQGLVTTISSNQGVDDVYSQVRQVV 189
                  89*************************************.*********************************988543111579**************9853799999***************************************************************************9986 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   4.9e-55   4.1e-52       4     188 .]       2     192 ..       1     192 [. 0.92
   2 ?   -3.3   0.0       1.5   1.3e+03      69      89 ..     218     238 ..     207     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 4.9e-55
    TIGR01360   4 kiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalek..skGflidGyprevkqGeef....ekriaeaklvlyldvsedtlvkrllkraetsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaaldkv 188
                  k++f++GGpGsGkGtqc k+ + yG  hls+Gdllr+e +sgs +++ +++ + +G++vp  v l ll+  + +++++  +   l+dG+pr+ ++ e +     +++a  + v++ld+ e+ +v+r+l+r++ts+r+ddn  +i+krl+ty+ at p++eyy ++g +++i +++ vddv+ +v + ++kv
  MMETSP1174-20130828|10430_1   2 KVLFVLGGPGSGKGTQCTKLARDYGALHLSAGDLLRAERKSGSSHAAVINDCITEGKIVPVAVTLALLRREIEASAKDgaTPLTLVDGFPRNWDNQEGWvqggMSEVASVDGVVLLDCPEKVMVNRILERGKTSGRDDDNVTAIQKRLRTYTDATLPILEYYAAQGLVTTISSNQGVDDVYSQVRQVVNKV 192
                  89*******************************************************************9999887764466789******9876554422225799*****************************************************************************9998875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.5
    TIGR01360  69 dllkeallkalekskGflidG 89 
                  +l  + +++  ++s G l++G
  MMETSP1174-20130828|10430_1 218 SLCDDDMTAIEGESMGQLVEG 238
                  577889999999999999988 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   2.2e-29   1.8e-26       3     127 ..       5     131 ..       3     136 .. 0.89
   2 !   35.4   0.1   2.1e-12   1.7e-09     157     211 ..     135     189 ..     132     190 .. 0.94

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 2.2e-29
    TIGR01351   3 vllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeede..ekgfiLDGfPRtle.QaeaLdelleelglkldavielkvpdevlverisgR 127
                   +lG PGsGKGTq+++la  +g  h+s+GdllRae k++++ +  +++++ +Gk+vp +++++l+++++e+++++  +   ++DGfPR+ + Q   ++  ++   +++d v+ l+ p++v+v+ri +R
  MMETSP1174-20130828|10430_1   5 FVLGGPGSGKGTQCTKLARDYGALHLSAGDLLRAERKSGSSHAAVINDCITEGKIVPVAVTLALLRREIEASAKDgaTPLTLVDGFPRNWDnQEGWVQGGMS-EVASVDGVVLLDCPEKVMVNRILER 131
                  579******************************************************************9977666556689*******8615566666555.5688*******************99 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.1e-12
    TIGR01351 157 kqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                    R+DD+  +++kRl++Y++ t p++eyY+++g +++i++++ +++v++++++++
  MMETSP1174-20130828|10430_1 135 SGRDDDNVTAIQKRLRTYTDATLPILEYYAAQGLVTTISSNQGVDDVYSQVRQVV 189
                  569************************************************9986 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     7e-06    0.0058       3      35 ..       4      36 ..       2      48 .. 0.86
   2 ?    0.2   0.0      0.17   1.4e+02      88     115 ..     109     136 ..      97     157 .. 0.67
   3 ?    3.0   0.0     0.024        19     116     158 ..     186     227 ..     173     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7e-06
    TIGR02173  3 ivisGpPGsGkttvakilaeklslklisaGkir 35
                 + + G PGsGk t   +la++++  ++saG++ 
  MMETSP1174-20130828|10430_1  4 LFVLGGPGSGKGTQCTKLARDYGALHLSAGDLL 36
                 567799************************975 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.17
    TIGR02173  88 eyaDvkiylkaslevraeriakrenksl 115
                     D  + l+ + +v  +ri +r + s 
  MMETSP1174-20130828|10430_1 109 ASVDGVVLLDCPEKVMVNRILERGKTSG 136
                  3456679999**********99988764 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.024
    TIGR02173 116 tealkeiiereesekrrykeiygiDlddlsiyDLvintskldv 158
                   ++++++ er  +e+     + +iD  d++ yD   + + +++
  MMETSP1174-20130828|10430_1 186 RQVVNKVLERQLLEHNEDL-LTAIDTGDWATYDSLCDDDMTAI 227
                  6789999999999888777.59***********9988776655 PP

>> TIGR01896  cas_AF1879: CRISPR-associated protein Cas4/Csa1, subtype I-A/APERN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12        96     211     254 ..     167     212 ..     149     226 .. 0.73
   2 !   11.4   0.1   4.8e-05      0.04      59     178 ..     227     347 ..     222     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.12
    TIGR01896 211 Gllvyvnviegveikaelv..aisddlRreflekRdevieivesgs 254
                  Gl+  ++ ++gv+  +  v  ++++ l r++le+ ++++ ++++g 
  MMETSP1174-20130828|10430_1 167 GLVTTISSNQGVDDVYSQVrqVVNKVLERQLLEHNEDLLTAIDTGD 212
                  7788888888876555554225788889999999999998888765 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.8e-05
    TIGR01896  59 irgeeeaklvlGqaiHevfakaleevrklieegeklssvlerslraekiavaakelskyveevysavaakvaekaselsadslsflviPvavevkvdG...splGlsdrlrvdalvlilsvvv 178
                  i+ge+ ++lv+G+  He +++++++     ++++k   v + s  + + +++++     +++v+++++   +  +++ s +++++l     v   vdG     +Gl++ ++ +a ++ +s v+
  MMETSP1174-20130828|10430_1 227 IEGESMGQLVEGKKFHEFYFRPSADDDAQQVKHQKSRRVSTMSNSKVR-VISPTVGLVTCTRVMQTESTGKDGSRVFGSPQAVASL-ESGRVRQVVDGltsTSIGLEELMSNAAQITSISKVI 347
                  678999******************999666666666555554444444.3668888899999999999989999999999999998.677888999995555799999999998888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1226.11
//
Query:       MMETSP1174-20130828|10434_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|10435_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1174-20130828|10439_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   34.8   0.2      4e-09   34.7   0.2    1.1  1  TIGR00494 crcB: protein CrcB


Domain annotation for each model (and alignments):
>> TIGR00494  crcB: protein CrcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   9.7e-13     4e-09      35      91 ..      17      74 ..       3      76 .] 0.75

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 9.7e-13
    TIGR00494 35 ltvnliGalilGllaylsqlavis..adlklliatGflGalttFstfslevlkLlqegr 91
                 l +n++G+l +G+ a  s+   +   + l + i+tGf+G+lttFs + l    L ++g 
  MMETSP1174-20130828|10439_1 17 LPANMLGCLLMGF-ASGSKHWFLRdfPALYIGITTGFCGSLTTFSGWILKAALLCRRGL 74
                 568**********.33333333331245667799*************999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|10438_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 787.53
//
Query:       MMETSP1174-20130828|10437_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1163.90
//
Query:       MMETSP1174-20130828|10440_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1367.03
//
Query:       MMETSP1174-20130828|10442_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1439.11
//
Query:       MMETSP1174-20130828|10444_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1174-20130828|10443_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 1581.06
//
Query:       MMETSP1174-20130828|10450_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 846.55
//
Query:       MMETSP1174-20130828|10453_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.8   1.2      0.034   10.8   0.8    1.0  1  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
        4.7    5.3   8.1        6.8    4.8   0.2    2.2  2  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   1.6e-05     0.034      87     134 ..       7      56 ..       1      63 [. 0.69

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.6e-05
    TIGR01330  87 vlgrvselvnetl.aeaknykkdelvkl.ksaeellkiidrgnseGGrkG 134
                  ++ +  e+ +++  +++ ny+++++ ++  ++ e+ +  ++gn++G  kG
  MMETSP1174-20130828|10453_1   7 TTTTTREIQQQQQqQQQGNYNNNKRNTTeTTTREIQQQQQQGNYNGNNKG 56 
                  444455665554405566898876655415789**************999 PP

>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.6    0.0056        11      35      47 .]      10      22 ..       6      23 .. 0.81
   2 ?    4.8   0.2    0.0033       6.8      35      46 ..      37      48 ..      33      49 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0056
    TIGR03141 35 llrelrrlqarea 47
                   re++++q++++
  MMETSP1174-20130828|10453_1 10 TTREIQQQQQQQQ 22
                 6799999999885 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0033
    TIGR03141 35 llrelrrlqare 46
                   re++++q+++
  MMETSP1174-20130828|10453_1 37 TTREIQQQQQQG 48
                 689*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       421  (0.102633); expected 82.0 (0.02)
Passed bias filter:                      248  (0.0604583); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 268.10
//
Query:       MMETSP1174-20130828|10454_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|10458_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|10457_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.50
# Mc/sec: 710.10
//
Query:       MMETSP1174-20130828|10460_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 257.03
//
Query:       MMETSP1174-20130828|10456_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1174-20130828|10459_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-15   53.6   0.0    3.9e-15   53.2   0.0    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    4.1e-05   20.2   0.0    5.6e-05   19.7   0.0    1.1  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
    0.00017   17.4   0.0    0.00022   17.1   0.0    1.0  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.8e-18   3.9e-15     348     571 ..      42     277 ..      28     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 2.8e-18
    TIGR00204 348 kkf.PkryfdvaiaeqhavtlaaalaieGlkPvvai.ystflqraydqvvhdvaiqklpvllaidraGiv........GadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGn.avgveltee..ekleiGksellrkgedilllgfGtlveealev.aeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsd 571
                  ++f  +r+f+  + eq  + +a + a  G   +  i ++ ++  a+dq+v ++a  +       d  G+v        G  G+ h      +y+ + P l +++P+   ++k +l  a++ d +p+ +  P+      +e ++e   ++++G++  +++g d+ ++g+G  +    ++   +++e+gi++ ++dlr + P d e ++a ++++ +lv+ +e+ ++GG+g+ +   +s+
  MMETSP1174-20130828|10459_1  42 DEFgSDRVFNAPVCEQAIAGFAIGYAAMGKTAIAEIqFADYIFPAFDQIVNEAAKYRYRSGNQFDVGGLVirtpcgavGHGGHYHSQSP-EAYFVHTPGLKVVTPRSPYDAKGLLLAAIR-DPNPVIFLEPKALyRTAIEEVPEgdYEIPLGEAYKVKEGSDVTVVGWGGHMRVLEQAcDMAFEERGISCELIDLRTLLPWDVEAVEASVAKTGRLVISHEAPVTGGFGAEISAEISS 277
                  55524899*************************9996799**************97766655555555542221100066666665544.58999*****************99988886.558999999997513556666666789*********************99987766515678999********************************************99765554 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.1e-08   5.6e-05     452     535 ..     187     274 ..     173     284 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.1e-08
    TIGR03710 452 eipe.pevegdedadvlvigwGstkgaikeaverl.reeglkvallhlrllnPlpke.laellekakk.vvvvEqNatgqlakllrae 535
                  eip  + ++ +e +dv+v+gwG+    +++a++ + +e+g++++l+ lr l P   e +++ ++k  + v+  E   tg +   ++ae
  MMETSP1174-20130828|10459_1 187 EIPLgEAYKVKEGSDVTVVGWGGHMRVLEQACDMAfEERGISCELIDLRTLLPWDVEaVEASVAKTGRlVISHEAPVTGGFGAEISAE 274
                  55552344556689******************9753788*****************99888777765515666777777766666655 PP

>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-07   0.00022     622     781 ..      18     176 ..       3     205 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.6e-07
    TIGR00239 622 qrhavlh..dqesgaeyvPlshlsnekasfevadsvlseesvlafeyGyavtsPetlvlWeaqfGdfanaaqvvidqfissGeqkWgrks.......GlvlllPhGyeGqGPehssarlerflqlaaednlqvvvpttpaqvfhilrrqalrelrrPlvvlspksllrh 781
                  +r av+   d   g  +     l++e +s +v+++++ e+++ +f  Gya        + e qf d+   a   +dq +    +k++ +s       Glv+  P G  G G  + s   e ++       l+vv+p +p +   +l   a r+   P++ l pk l r 
  MMETSP1174-20130828|10459_1  18 DRSAVVFgeDVAFGGVFRCTMGLRDEFGSDRVFNAPVCEQAIAGFAIGYAAMGK--TAIAEIQFADYIFPA---FDQIVNE-AAKYRYRSgnqfdvgGLVIRTPCGAVGHGGHYHSQSPEAYFV--HTPGLKVVTPRSPYDAKGLLL-AAIRD-PNPVIFLEPKALYRT 176
                  5667765213345677888888999************************98865..4688******99887...6776653.3444444322222338*************9999999999974..556899999999999888775.45565.579999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.55
# Mc/sec: 772.74
//
Query:       MMETSP1174-20130828|10470_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 208.25
//
Query:       MMETSP1174-20130828|10475_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 546.81
//
Query:       MMETSP1174-20130828|10474_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.78
# Mc/sec: 754.71
//
Query:       MMETSP1174-20130828|10477_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   22.7   3.6    1.2e-05   22.7   2.5    2.2  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter
    1.9e-05   22.3   0.1    3.5e-05   21.5   0.1    1.4  1  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.5   5.8e-09   1.2e-05      40     142 ..      70     186 ..      35     196 .. 0.70
   2 ?   -2.0   2.8      0.19     4e+02     172     258 ..     252     336 ..     238     351 .. 0.48

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.8e-09
    TIGR00950  40 r..nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlal...aGivlllsdg.........nlsislaGlllgllsgisfAl 142
                  r      rl r  ++g + +++ + +++ ++  +++a+++ ++++ Pl+++l+ +l+ +e +  ++l+A  +++   +G+v+  s +         ++ +s  G++++l+ ++   l
  MMETSP1174-20130828|10477_1  70 RhgARYTRLVRQHFFGGVMMAISNICFVNSFALTNAAVTLSVVASCPLLTALMAKLMLNEATPPRTLIACTVGIccvIGVVVGSSISetesaegthSAHESFLGAMFALATAFGISL 186
                  35655678889999*******************************************************998852225554433322223343333334444444444444444444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.19
    TIGR00950 172 llllpfalllgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggal 258
                  ++ ++++l+ g  +  l+     + +l++ g++    a+ l   g k++  + + ++ lle + + +  ++ lge+ +l+  igg++
  MMETSP1174-20130828|10477_1 252 IIDVLVSLIVGAWPAHLSNHD--YFWLVFQGIFVLPPAFTLLGIGNKYLLSAEVMLMMLLETILGPVWVYAGLGEEPNLAAVIGGSV 336
                  444444444444444444222..2223333333333344444444444444444444444444444444444455554444444444 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.7e-08   3.5e-05      78     163 ..      94     191 ..      77     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.7e-08
    TIGR03340  78 lglaqAYehadvglvYPlaRslPvlvaiaatlllgeeLsalaWlGillivlGl..lvlglskkaqsrrkalk..........walvaalitaiYsviD 163
                  +     +  ++ +++  ++ s P+l a++a l+l+e  ++   +  ++ ++ +  +v+g+s  +  + +  +          +al++a++++ Ysv+ 
  MMETSP1174-20130828|10477_1  94 ICFVNSFALTNAAVTLSVVASCPLLTALMAKLMLNEATPPRTLIACTVGICCVigVVVGSSISETESAEGTHsahesflgamFALATAFGISLYSVSC 191
                  44455677778889999**********************99988776544433113455554444333333346678889****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1539.87
//
Query:       MMETSP1174-20130828|10481_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 956.19
//
Query:       MMETSP1174-20130828|10486_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|10482_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.13s 00:00:00.63 Elapsed: 00:00:00.66
# Mc/sec: 1573.87
//
Query:       MMETSP1174-20130828|10484_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.1    4.6   9.2        2.9    6.2   2.6    2.2  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.026   1.1e+02      26      64 ..      38      77 ..      25      87 .. 0.59
   2 ?    6.2   2.6   0.00071       2.9      40      82 ..      95     136 ..      88     149 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.026
    TIGR04104 26 ikCpnCgekqyltaksrkksvlllliplllllall.llel 64
                 ++C  C e+ +l + +  +s+  +l p ++l+++l +++l
  MMETSP1174-20130828|10484_1 38 FECLVCIERLFLMNANIYLSSQPVLQPFVVLMIALvSVKL 77
                 4666666666666666666666666666555555333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00071
    TIGR04104  40 ksrkksvlllliplllllallllelsiililllyiillllivl 82 
                   +++ +v +++++++l+++ + le++ ++ +++++i++ll+v+
  MMETSP1174-20130828|10484_1  95 MKHWAIVAMVIFTIILQVHDA-LEIELPMGITVMLITILLTVF 136
                  456668888888888888885.555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 554.77
//
Query:       MMETSP1174-20130828|10489_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-14   49.8   0.0    1.7e-13   48.7   0.0    1.6  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    5.5e-09   33.6   0.0    8.2e-09   33.0   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase
    7.2e-06   22.6   0.0    9.4e-06   22.2   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
    0.00048   18.1   0.0    0.00074   17.5   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
     0.0016   15.9   0.0     0.0022   15.5   0.0    1.2  1  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9   2.3e+03      88      98 ..      26      36 ..      16      37 .. 0.71
   2 !   48.7   0.0   2.1e-16   1.7e-13       3     130 ..      92     226 ..      90     228 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 2.9
    TIGR01575 88 gvkeifLEVRe 98
                 +  + +LEVR+
  MMETSP1174-20130828|10489_1 26 QEDSNILEVRQ 36
                 44556899996 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 2.1e-16
    TIGR01575   3 kevleiekeafavspwteaafaeelasekaeyllaeeggkvvGyiv.........vqivldeaeilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkeialrknYYkdseedAl 130
                   +v+e+  +  + +p +  + ++ l +  +  + a  g+++vG i+            ++  + i  +av+ ++++ GiG +L++   +++ + ++ e++LE  + N+ A +LY++lgf + ++  +YY ++  dA+
  MMETSP1174-20130828|10489_1  92 SAVMELVDRDLS-EPYSIFTYRYFLHTWPNLCVCAMAGDQLVGVIIckaetergtSGDDVCRGYIAMLAVNDKFRKLGIGAHLVELAAHRMLKLECDEVMLETEVTNTSALRLYERLGFTRDERLLKYYLNGV-DAF 226
                  677777777777.58888888887887788888888899999999944333322111233456799***************************************************************9998.876 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0     1e-11   8.2e-09     209     293 ..     128     217 ..     119     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1e-11
    TIGR03448 209 egellGFHWtKvHadee...pe..lgEvYvvgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtvaevdva 293
                   ++l+G    K  ++++    +   g + +++v+++ ++ G+G  L+ +  + + + +  +v+L +e  n++A+r+Ye+LgFt+ e+ + 
  MMETSP1174-20130828|10489_1 128 GDQLVGVIICKAETERGtsgDDvcRGYIAMLAVNDKFRKLGIGAHLVELAAHRMLKLECDEVMLETEVTNTSALRLYERLGFTRDERLLK 217
                  6777777777777766643323323566789****************************************************9887655 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.1e-08   9.4e-06     148     214 ..     146     211 ..     118     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.1e-08
    TIGR03103 148 afddpekGsslWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrr 214
                    dd  +G  +  lav+ + +k G+G +lv  +a+++ + ++  + l     n+ a +lye+lgf r
  MMETSP1174-20130828|10489_1 146 SGDDVCRG-YIAMLAVNDKFRKLGIGAHLVELAAHRMLKLECDEVMLETEVTNTSALRLYERLGFTR 211
                  44555555.4678****************************************************87 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     9e-07   0.00074      89     142 ..     165     218 ..     150     225 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9e-07
    TIGR03585  89 k.kgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfelegvlkqf 142
                  +  g+G  l e   +    kl+++++ le   +N++al+lye+ gf++ ++l ++
  MMETSP1174-20130828|10489_1 165 RkLGIGAHLVEL-AAHRMLKLECDEVMLETEVTNTSALRLYERLGFTRDERLLKY 218
                  337888887654.4555679****************************9887665 PP

>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06    0.0022     125     181 ..     154     210 ..     120     220 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
    TIGR02382 125 riGllavfpgvqirGiGarlmaaakawarrrGltrlrvatqvgnvaalrlyirsGas 181
                   i +lav    +  GiGa+l+++a +   +     + + t+v+n++alrly r G +
  MMETSP1174-20130828|10489_1 154 YIAMLAVNDKFRKLGIGAHLVELAAHRMLKLECDEVMLETEVTNTSALRLYERLGFT 210
                  58999**999999**************************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.85
# Mc/sec: 361.81
//
Query:       MMETSP1174-20130828|10493_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   27.5   0.0    1.8e-07   27.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0028   14.1   0.0     0.0043   13.5   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
      0.012   12.9   0.0       0.02   12.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.3e-10   1.8e-07      85     243 ..     122     287 ..      36     300 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.3e-10
    TIGR03903  85 mlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLl.pgvedadeatltrttevlGsPaYaaPeqLRg.epvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsa....iaghpLg....evLRkalnkdvrqRaasaealaer 243
                  +   L +l   h++  +hRD+k  ni++  ++   +  + DFG++  +  g +    +    +  ++G+P + aPe +   +    k+D++++G+  le   G+      s  +vl   +  ++ sl        +g p +    ++ R  l+kd++ R + a+ l + 
  MMETSP1174-20130828|10493_1 122 LRETLLGLMYFHEHSRIHRDIKAGNILLDGRG---KVVIADFGVSRWVkHGSRTGSLLSEDVARTFVGTPCWMAPEVMEQlDGYDFKADIWSFGITALELAKGQAPYANHSPMKVLLCTIQNDPPSLKTYddekRDGEPFSqnfkQMTRMCLKKDPKLRPTCARLLSHA 287
                  45567788999****************96555...67788*****865156666666666677789*********866542556789*****************99999999999999999999999765111144555442222677889999999999999988654 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.1e-06    0.0043     248     309 ..     106     169 ..      86     180 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.1e-06
    TIGR01982 248 eklkeaGldlkalaenlvesflkqvl..rdgfFHaDlHpGNilvakdgkiialDfGivgrlsee 309
                  + l+ +Gl  + la  l e++l  ++  +++  H D+ +GNil++  gk+++ DfG+   +++ 
  MMETSP1174-20130828|10493_1 106 KILDVRGLKEAWLAWILRETLLGLMYfhEHSRIHRDIKAGNILLDGRGKVVIADFGVSRWVKHG 169
                  567888888888888888888766553367899***********************97666655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.02     102     139 ..     128     166 ..      54     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
    TIGR03724 102 lvgklHkagivhgDlttsNiivk.ddklyliDfGLgkks 139
                   +   H++  +h D+   Ni+++  +k+++ DfG ++  
  MMETSP1174-20130828|10493_1 128 GLMYFHEHSRIHRDIKAGNILLDgRGKVVIADFGVSRWV 166
                  56678*****************636799999***99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1297.89
//
Query:       MMETSP1174-20130828|10496_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 883.66
//
Query:       MMETSP1174-20130828|10501_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1272.75
//
Query:       MMETSP1174-20130828|10503_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 945.21
//
Query:       MMETSP1174-20130828|10504_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 697.66
//
Query:       MMETSP1174-20130828|10507_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.42
# Mc/sec: 213.70
//
Query:       MMETSP1174-20130828|10508_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 299.98
//
Query:       MMETSP1174-20130828|10511_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 911.23
//
Query:       MMETSP1174-20130828|10510_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-10   36.8   0.1    9.1e-10   36.2   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    2.2e-09   34.8   0.1    3.4e-09   34.2   0.1    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.2e-07   28.2   0.0    5.4e-07   27.5   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    3.5e-07   27.7   0.0    5.9e-07   27.0   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    2.1e-05   21.6   0.1      3e-05   21.1   0.0    1.2  1  TIGR00452 TIGR00452: putative methyltransferase
    2.7e-05   21.0   0.0    3.8e-05   20.5   0.0    1.3  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    8.1e-05   19.9   0.0    0.00013   19.2   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00011   20.3   0.2    0.00022   19.3   0.1    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00012   19.5   0.1    0.00017   19.0   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00015   18.7   0.1    0.00025   18.1   0.1    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00037   17.7   0.7    0.00099   16.3   0.1    1.9  2  TIGR00478 tly: hemolysin TlyA family protein
     0.0011   16.2   0.1      0.002   15.3   0.1    1.4  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
     0.0042   15.4   0.0     0.0085   14.4   0.0    1.5  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
     0.0085   13.6   0.0      0.016   12.7   0.0    1.4  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
     0.0099   13.0   0.1      0.015   12.4   0.1    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
  ------ inclusion threshold ------
      0.023   12.3   0.0      0.034   11.8   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
      0.034   10.5   0.0      0.045   10.1   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   3.8e-12   9.1e-10     158     231 ..      59     133 ..      51     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 3.8e-12
    TIGR00406 158 lkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkie...gkaDviva 231
                   kd +v+DvGcG GiLs+ a+  ga++v++v+     +e+ark +++N+ sd++ +++  + ++ie   +k+D+i++
  MMETSP1174-20130828|10510_1  59 FKDAVVLDVGCGTGILSMFAASAGARQVIGVECS-GIIEQARKIVDKNGFSDKITLIKG-KVEEIElpvEKVDIIIS 133
                  58899**************************985.569****************99988.44555522267888886 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.4e-11   3.4e-09      39     122 ..      50     133 ..      26     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 1.4e-11
    TIGR01983  39 kklkknekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvla 122
                  + +++n++ +++  vlDvGcG G+ls   a  ga  v+g++ s  +ie A++  +k++   ki     +vee++    e+ D++++
  MMETSP1174-20130828|10510_1  50 NAITQNKHLFKDAVVLDVGCGTGILSMFAASAGARqVIGVECS-GIIEQARKIVDKNGFSdKITLIKGKVEEIELP-VEKVDIIIS 133
                  3445566788999********************988****865.79************999************776.566999975 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   2.2e-09   5.4e-07      23     103 ..      49     133 ..      44     138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 2.2e-09
    TIGR02072  23 LlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklplekksfDlivS 103
                  + ++ ++k  f++a vLd+GcGtGil+   ++    + +i +  s + +eqa+k +       +++ i+g +e+++l  +++D+i+S
  MMETSP1174-20130828|10510_1  49 MNAITQNKHLFKDAVVLDVGCGTGILSMFAASAGARQ-VIGVECS-GIIEQARKIVDkngfsdKITLIKGKVEEIELPVEKVDIIIS 133
                  5566677779999***********9998777777766.8888755.5566777777778899************************9 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.4e-09   5.9e-07      43     124 ..      47     133 ..      32     144 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.4e-09
    TIGR02021  43 kllewlpkd..slkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavva 124
                    ++ ++++  + k   vlD GCGtG+ls+  A  Ga +v +v+ s  ++e+ark  +k+  +++++   + +e++e   +k D++++
  MMETSP1174-20130828|10510_1  47 SYMNAITQNkhLFKDAVVLDVGCGTGILSMFAASAGArQVIGVECS-GIIEQARKIVDKNGFSDKITLIKGKVEEIElpvEKVDIIIS 133
                  45566655545778899*******************9459999988.59************99*988876666655433478887775 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.2e-07     3e-05     112     223 ..      51     164 ..      29     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.2e-07
    TIGR00452 112 rvlkhlsplkgrtildvGcgsGyylfrmvgeGaklvvGidptelvlkqfeavrklldndkraillplGieqlq.elkafdtvfs..lGvlyhrksplealkqlkdqlvkeGelvl 223
                   + ++   +k+ ++ldvGcg+G   +    +Ga+ v+G++ + ++ +  ++v k  +   +++l+   +e+++ + +  d++ s  +G +    s l+++   +d+   +G ++l
  MMETSP1174-20130828|10510_1  51 AITQNKHLFKDAVVLDVGCGTGILSMFAASAGARQVIGVECSGIIEQARKIVDKN-GFSDKITLIKGKVEEIElPVEKVDIIISewMGYFLLYESMLDTVIFARDKWLVDGGMIL 164
                  5666777789************98777889***********99986655555553.445689999999**998356699*99987788888889999999888888777777776 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.6e-07   3.8e-05     280     353 ..      47     121 ..       9     133 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.6e-07
    TIGR00479 280 klvdralealelqgeekvvDaycGvGtftlplAk.qaksvvgvevvkesvekakrnAelngia.nveflageleev 353
                    ++ + +  +l ++  v+D+ cG G ++++ A+ +a++v+gve    ++e+a++   +ng    ++ ++g++ee 
  MMETSP1174-20130828|10510_1  47 SYMNAITQNKHLFKDAVVLDVGCGTGILSMFAASaGARQVIGVEC-SGIIEQARKIVDKNGFSdKITLIKGKVEEI 121
                  5567788888999999***************996379*******7.689************862699999999974 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.4e-07   0.00013      32     110 ..      53     131 ..      42     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.4e-07
    TIGR01934  32 vkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLpfednsfdav 110
                   ++ + +k++ vlDv +GtG l++  a + +++v+gv +s  ++e a+k + ++  + +++ i++++ee+ ++ +++d++
  MMETSP1174-20130828|10510_1  53 TQNKHLFKDAVVLDVGCGTGILSMFAASAGARQVIGVECS-GIIEQARKIVDKNgFSDKITLIKGKVEEIELPVEKVDII 131
                  44445559999***********998888888******965.799****9999889899***********99998888875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   9.2e-07   0.00022      17      93 ..      58     132 ..      42     136 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.2e-07
    TIGR02469  17 lkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgv.snieivegdapkaeedsleeadavf 93 
                  l k++v+lD+G+GtG +++ aa +  + +v+++e +   +e+ ++ ++++g+ ++i +++g+++++e   +e++d+++
  MMETSP1174-20130828|10510_1  58 LFKDAVVLDVGCGTGILSMFAASAGAR-QVIGVECS-GIIEQARKIVDKNGFsDKITLIKGKVEEIELP-VEKVDIII 132
                  45689**************99887666.99****86.57888888888886515678888888866666.88888876 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     7e-07   0.00017      88     162 ..      60     133 ..      30     134 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 7e-07
    TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllealeekgkfdlivs 162
                  + + vlD+g+G+G++ +  a+     +vi+v++s   ++ ark ++++g ++ ++++k+ + e   + +k+d+i+s
  MMETSP1174-20130828|10510_1  60 KDAVVLDVGCGTGILSMFAASA-GARQVIGVECSG-IIEQARKIVDKNGFSDkITLIKGKVEEIELPVEKVDIIIS 133
                  2568*********999876666.777899998774.5788888888888888899*****9644358899****98 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1     1e-06   0.00025     109     188 ..      52     133 ..      37     134 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1e-06
    TIGR00536 109 lisqepl...khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnlle.slakqkidlivs 188
                  + ++++l     +lD+g+G+G  ++  A++ +  +vi+v +s   ++ a++ + k+++++++ li++++ e +l+ +k+d+i+s
  MMETSP1174-20130828|10510_1  52 ITQNKHLfkdAVVLDVGCGTGILSMFAASAGA-RQVIGVECSG-IIEQARKIVDKNGFSDKITLIKGKVEEiELPVEKVDIIIS 133
                  55555542223499***********9988888.89******97.7999********************976446666*****98 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.1e-06   0.00099      73     107 ..      58      92 ..      43     107 .. 0.86
   2 ?   -1.2   0.0      0.93   2.2e+02     136     168 ..     186     218 ..     172     224 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.1e-06
    TIGR00478  73 dvknkivlDvGsStGGFtdcalqkGAkkvygvdvg 107
                   +k+ +vlDvG  tG  + +a   GA++v gv+ +
  MMETSP1174-20130828|10510_1  58 LFKDAVVLDVGCGTGILSMFAASAGARQVIGVECS 92 
                  589*****************************986 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.93
    TIGR00478 136 divPelavvDvSfislikileellsllsdselv 168
                  d+  ++  +D+S i  i + e+l ++++++ +v
  MMETSP1174-20130828|10510_1 186 DFWDNVYGFDMSVIKDIAVTEPLVDVVQSKAVV 218
                  444667779999999999999999998866554 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   8.3e-06     0.002       6      77 ..      52     120 ..      45     129 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 8.3e-06
    TIGR00091   6 lekfatvegnkkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglk.Nlkvlcgdakk 77 
                  + + ++++  k  +vl++GcG G  l+  A      +++G+E  + i+ +a + ++k+g++  + +++g  ++
  MMETSP1174-20130828|10510_1  52 ITQNKHLF--KDAVVLDVGCGTGI-LSMFAASAGARQVIGVEC-SGIIEQARKIVDKNGFSdKITLIKGKVEE 120
                  44455555..889*********95.677788888999*****8.5799***********99778888776655 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-05    0.0085       1      55 [.      63     116 ..      63     130 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.5e-05
    TIGR01444   1 vviDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkllna 55 
                  vv+D+G+  G +s+++a a+a+ +vi +E +  ++e++++ v +n++++ ++l++ 
  MMETSP1174-20130828|10510_1  63 VVLDVGCGTGILSMFAASAGAR-QVIGVECS-GIIEQARKIVDKNGFSDkITLIKG 116
                  79*******************9.******75.788999999999999887777765 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.6e-05     0.016      50      86 ..      58      94 ..      40     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-05
    TIGR00095 50 eivgakvLdlfaGsgalglEALsRgakkvvfveqdkk 86
                  +++a vLd+  G+g+l++ A s ga +v+ ve++  
  MMETSP1174-20130828|10510_1 58 LFKDAVVLDVGCGTGILSMFAASAGARQVIGVECSGI 94
                 478999***************************9854 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   6.2e-05     0.015      16      90 ..      47     124 ..      33     135 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.2e-05
    TIGR00755  16 svlqkiveaaeveesdvvlEiGpGlGaLTeellekakk.vvaiEiDkrlaekLrkkle...leekleviegDalkldle 90 
                  s ++ i ++ ++ ++ vvl +G+G+G L+   ++  ++ v+++E  + ++e+ rk ++    + k+++i+g + +++l+
  MMETSP1174-20130828|10510_1  47 SYMNAITQNKHLFKDAVVLDVGCGTGILSMFAASAGARqVIGVEC-SGIIEQARKIVDkngFSDKITLIKGKVEEIELP 124
                  556677777777789**************9998876655*****9.567777777776555778899998888887777 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014     0.034      62     126 ..      46     106 ..      18     119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
    TIGR00080  62 aphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLe 126
                    +m a +++  +l + a vL++G+G+G ++   a+   r   v+++e   ++ e+a++ + k +
  MMETSP1174-20130828|10510_1  46 RSYMNA-ITQNKHLFKDAVVLDVGCGTGILSMFAASAGAR--QVIGVE-CSGIIEQARKIVDKNG 106
                  455554.67778899999*************999999888..8****9.5789999999877655 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019     0.045     269     323 ..      47      99 ..      12     119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00019
    TIGR04074 269 qRleavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekak 323
                  + ++a++++ +  +   vlD+GcG g +l++ +a++ +++++gv+ s   +e+a+
  MMETSP1174-20130828|10510_1  47 SYMNAITQNKHLFKDAVVLDVGCGTG-ILSMFAASAGARQVIGVECSG-IIEQAR 99 
                  44566666666677789********9.67999*************984.345554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 870.62
//
Query:       MMETSP1174-20130828|10520_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-09   34.8   2.0    0.00072   16.5   0.0    3.8  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.7e-08   31.9  10.4      1e-06   26.1   3.7    3.3  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.9e-08   31.4   0.2      0.016   11.8   0.0    3.3  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00022   18.2   0.6       0.24    8.1   0.0    3.4  3  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      0.003   15.0   0.7       0.51    7.7   0.0    3.8  5  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0092   12.3   0.1       0.27    7.5   0.0    2.3  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13        86     216     271 ..     116     165 ..      93     174 .. 0.69
   2 !    3.9   0.0    0.0068       4.7     263     298 ..     246     281 ..     239     292 .. 0.85
   3 !   11.0   0.9   4.8e-05     0.033     229     345 ..     329     436 ..     256     472 .. 0.72
   4 !   16.5   0.0   1.1e-06   0.00072     240     303 ..     463     518 ..     436     538 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.13
    TIGR01622 216 siadlkLYvGnlh.fnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsda 271
                  si  + ++vG+l+    t  eL  + ++FG +e++ ++  ++        F++F+d 
  MMETSP1174-20130828|10520_1 116 SI-SRSIFVGSLKgGYDTYYELCMLANSFGALESISINASKYI------AFLNFVDH 165
                  44.4678999999544588999*************99765443......55555555 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0068
    TIGR01622 263 yGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                  y Fi      ea +A  +l G+ + GR+i   +a++
  MMETSP1174-20130828|10520_1 246 YIFIHTCSIAEAVQAKSHLEGMLIGGRPIVLKYAKE 281
                  77999999999*****************98888765 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 4.8e-05
    TIGR01622 229 fnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgs 345
                     t  +Lr +F     + +v ++kD       Gy Fi+ s  e a eA +kl    +   ei+v la++ ++e + ++a k ++ + ++++     + ++++ +d + d d+++ s
  MMETSP1174-20130828|10520_1 329 KGTTATDLRTLFGKHCVVTDV-IMKD-------GYAFINTSSVEGAMEARQKLHKTMIGKSEIRVNLAREKKGEGAMKTATKDHN-LAGHKNRNFSADQNSQSSFDGASDSDGGQPS 436
                  556667777777777777666.4455.......899*******************99*99*****************99999999.8999999999999999999999999988776 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1.1e-06
    TIGR01622 240 FepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvtees 303
                  Fep+ +i  + ++    t    Gy F++    e+a +A + l G  + GR i++ +a+D+ +  
  MMETSP1174-20130828|10520_1 463 FEPYCDIRAIVIK----T----GYCFVNTFSVECALKAKTSLQGTSINGRAIRINFAKDIGHMP 518
                  6666666666664....4....9************************************65544 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.9   1.3e+03     202     234 ..     143     170 ..     138     177 .. 0.68
   2 !    6.2   0.0    0.0015         1     330     389 ..     248     308 ..     210     319 .. 0.78
   3 !   26.1   3.7   1.5e-09     1e-06     180     514 ..     321     667 ..     315     715 .. 0.62

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.9
    TIGR01628 202 fGeitSaivkkdeknrkrgfafvnyekaedAkk 234
                  fG + S+ +     n ++  af+n+ ++ +A+ 
  MMETSP1174-20130828|10520_1 143 FGALESISI-----NASKYIAFLNFVDHTAAAD 170
                  555555554.....3445678999999988876 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0015
    TIGR01628 330 FVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRka..rLqqqfmqasaesrqlsigs 389
                  F+   s  eA +A + l+g +++g+P+ + +A+ k + ++  ++  +f++   + rq s+++
  MMETSP1174-20130828|10520_1 248 FIHTCSIAEAVQAKSHLEGMLIGGRPIVLKYAKEKGAHREggKIPVMFSK-PHMLRQPSQPN 308
                  66667888*************************99887762355666664.33445555554 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.5e-09
    TIGR01628 180 NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit..................laatgkilyVgraqkraeReaelkakfeelkqer.....kekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrqlsigspvigaan...isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnps....kpeapnalaqlaqqrlqaqgr..rnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkq 514
                  Nl v +  +  t + lr lF+k+  +t +i+k        g+af+n  + e A +A ++l+ + i+                  ++at++    g   +    ++  +  f+  +               Nl v N  ++    ++   Fe++ +i +  +  +      g+ FV   s e A kA t l+g+ +ng+ + +++A+   +      q+++q+++++   ++ + + +aa+         +a  ++ ++++++ ++ +  ++f+++q+    ++ +    +++      + + +++q+++     l   +++  ++ +++qq++    nq++++ + ++++ +q qq +q+   p+++
  MMETSP1174-20130828|10520_1 321 NLHVSKYGKGTTATDLRTLFGKHCVVTDVIMK-------DGYAFINTSSVEGAMEARQKLHKTMIGkseirvnlarekkgegamKTATKDHNLAGHKNRNFSADQNSQSSFDGASDSDggqpsRGSFPSRNLHVSNYGPGTRRGHIMTAFEPYCDIRAIVI--K-----TGYCFVNTFSVECALKAKTSLQGTSINGRAIRINFAKDIGHMPYPEFQRRQQQQPMMAVHPSLQYMNPAAGngsFGLGGGGAAYPMGYEHHGH-VYPHPYQGFPVMQPPGGYHHHQaympQQH----QWRHGPHHPQQGSMisSVLVPHETQ-VHTLEHQQQQQLLSPNQNPMEGVVEVHTLEQQQQQQQQPLSPIQN 667
                  9999999999*************999988754.......38*****************************************997776666556666666667777888888766543100003334457**************************97543..3.....49*****99***************************987776555455555567777666455555444443322222244444444444444.44444447774443333222221111111....1111222222222221111111222.222233333333333333333333322222222222222222222 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00022      0.15     246     305 ..     223     280 ..     154     287 .. 0.80
   2 !    7.1   0.1   0.00065      0.44     269     311 ..     352     395 ..     320     456 .. 0.75
   3 !   11.8   0.0   2.3e-05     0.016     264     321 ..     470     528 ..     442     547 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00022
    TIGR01648 246 teeiieksfsefkpGavervkkirdyafvhfedredavkamdelnGkeleGseievtlak 305
                    e i+  f +f    ve v k   y f+h  +  +av+a  +l+G  + G +i +  ak
  MMETSP1174-20130828|10520_1 223 RFEEIRAMFLQF-CDVVEMVVK-GSYIFIHTCSIAEAVQAKSHLEGMLIGGRPIVLKYAK 280
                  457788889999.889999988.57*****************************999888 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00065
    TIGR01648 269 rd.yafvhfedredavkamdelnGkeleGseievtlakPvdkes 311
                  +d yaf+  ++ e a++a ++l  + +  sei v la+    e 
  MMETSP1174-20130828|10520_1 352 KDgYAFINTSSVEGAMEARQKLHKTMIGKSEIRVNLAREKKGEG 395
                  444**********************************9655442 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 2.3e-05
    TIGR01648 264 rvkkir.dyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakg 321
                  r   i+  y fv   + e a+ka   l G+ ++G +i + +ak +    y  +++  + 
  MMETSP1174-20130828|10520_1 470 RAIVIKtGYCFVNTFSVECALKAKTSLQGTSINGRAIRINFAKDIGHMPYPEFQRRQQQ 528
                  55555525*************************************99999999987654 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00035      0.24      18      74 ..     135     191 ..     118     197 .. 0.93
   2 !    4.0   0.0    0.0064       4.4     395     482 ..     296     382 ..     237     394 .. 0.73
   3 !    4.0   0.1    0.0063       4.3     105     191 ..     432     512 ..     318     656 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00035
    TIGR01649  18 dlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqy 74 
                  +l  l + fG +  + +   k  A++ f d ++A++l ++  + p +i+  ++fv+ 
  MMETSP1174-20130828|10520_1 135 ELCMLANSFGALESISINASKYIAFLNFVDHTAAADLLECCCKQPAYIGHTPIFVNI 191
                  78889999***********************************************96 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0064
    TIGR01649 395 srlhRFkkpgsknknniypP...satLHlsNiPlsvsEedlkelfaekgvkvkafkvFpkdskmallelesveeAveaLialnnhqlkepn 482
                  s+ h  ++p + n  n ypP   s  LH s   +  +  dl  lf ++ v     +v  kd   a ++  sve A+ea  +l+++ + +++
  MMETSP1174-20130828|10520_1 296 SKPHMLRQPSQPNSVNQYPPrfvSKNLHVSKYGKGTTATDLRTLFGKHCVV---TDVIMKD-GYAFINTSSVEGAMEARQKLHKTMIGKSE 382
                  566777888888888888886656779999999999999999999887654...4566555.5789999999*****99999999988775 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0063
    TIGR01649 105 aGlesagpnkVLrvivenllypvtlDvlyqifnrvGkVlrivifkknnsvqAlvefesvesAqkAKaaldgadiYngCCtLkidyak 191
                   G+ s+g  +   + v n         + + f+++  +  ivi    +    +v+  sve+A kAK++l+g  i  g   ++i++ak
  MMETSP1174-20130828|10520_1 432 GGQPSRGSFPSRNLHVSNYGPGTRRGHIMTAFEPYCDIRAIVIK--TG--YCFVNTFSVECALKAKTSLQGTSIN-G-RAIRINFAK 512
                  44444444444444455544444455555666666666666653..33..3577888888888888888888884.3.357777776 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.13        86     226     300 ..      75     151 ..      36     169 .. 0.74
   2 ?   -0.8   0.0      0.28   1.9e+02     310     343 ..     243     277 ..     205     285 .. 0.76
   3 ?   -0.5   0.0      0.22   1.5e+02      90     124 ..     320     353 ..     317     366 .. 0.84
   4 ?    0.2   0.0      0.14        93     310     345 ..     353     388 ..     332     394 .. 0.76
   5 !    7.7   0.0   0.00075      0.51      46      81 ..     477     512 ..     467     516 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.13
    TIGR01661 226 lakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlsp..dtdeavlqlfgpfGavqsvki 300
                   ++ l +ha+++  ++ + s + a+ av  +   ++  +s++    ifv  l    dt   +  l   fGa++s+ i
  MMETSP1174-20130828|10520_1  75 QVHLLGSHAISSIGSSAPPSQVEAAQAVLEVLPATRGDNSPSISRSIFVGSLKGgyDTYYELCMLANSFGALESISI 151
                  457778888888877777777666666666666777777789999****999753377778889999****999876 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.28
    TIGR01661 310 kG.ygfvsmtnydeaalailslnGytlgnrvlqvs 343
                  kG y f+      ea++a   l+G+ +g+r + + 
  MMETSP1174-20130828|10520_1 243 KGsYIFIHTCSIAEAVQAKSHLEGMLIGGRPIVLK 277
                  44388888889999999999999999998866554 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.22
    TIGR01661  90 anlyvsGlPktmtqkeleslfspfGkiitsrilsd 124
                   nl+vs   k  t  +l +lf ++  ++t  i++d
  MMETSP1174-20130828|10520_1 320 KNLHVSKYGKGTTATDLRTLFGKHC-VVTDVIMKD 353
                  699******************9875.667777766 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.14
    TIGR01661 310 kGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                   Gy+f+  +  + a+ a + l  + +g+  ++v + 
  MMETSP1174-20130828|10520_1 353 DGYAFINTSSVEGAMEARQKLHKTMIGKSEIRVNLA 388
                  489999999999999999999888888877777654 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.00075
    TIGR01661  46 GyGfvnyvreedaekavnslnGlrlqnktikvsyar 81 
                  Gy fvn    e a+ka +sl G  +  ++i++ +a+
  MMETSP1174-20130828|10520_1 477 GYCFVNTFSVECALKAKTSLQGTSINGRAIRINFAK 512
                  899999999999999999999999999999988886 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00039      0.27     468     503 ..     247     282 ..     238     287 .. 0.91
   2 ?    2.1   0.0     0.017        12     465     500 ..     476     511 ..     467     533 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00039
    TIGR01642 468 vFleyadvasaekAreelnGrkFekrvvvaafysed 503
                  +F++  ++a+a +A+++l+G + ++r +v ++ +e 
  MMETSP1174-20130828|10520_1 247 IFIHTCSIAEAVQAKSHLEGMLIGGRPIVLKYAKEK 282
                  9*******************************9986 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.017
    TIGR01642 465 vGKvFleyadvasaekAreelnGrkFekrvvvaafy 500
                  +G  F++  +v+ a kA+  l+G   ++r + + f 
  MMETSP1174-20130828|10520_1 476 TGYCFVNTFSVECALKAKTSLQGTSINGRAIRINFA 511
                  566677777777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:01.00
# Mc/sec: 949.00
//
Query:       MMETSP1174-20130828|10528_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 447.73
//
Query:       MMETSP1174-20130828|10526_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1317.20
//
Query:       MMETSP1174-20130828|10530_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|10532_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 160.68
//
Query:       MMETSP1174-20130828|10535_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|10540_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   10.1   0.0      0.025    9.9   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   6.2e-06     0.025    1184    1246 ..      32      93 ..      15     104 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.2e-06
    TIGR00956 1184 ynlvagtlafliiyypvglyanaskadsveergvlfwlllilfflYvstlgllvislselads 1246
                   +n++ gt + l i+ +v ++   +   + ++r  l++++  +f + + +lg ++ sls++++ 
  MMETSP1174-20130828|10540_1   32 FNMISGTGFLLAIFGQVSFWVLSEF-REQTHRQSLIYMAAYIFPVLLLSLGTVIFSLSPVDQF 93  
                   99****************9765555.6778999**************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|10543_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 372.68
//
Query:       MMETSP1174-20130828|10537_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.3   0.0      0.023   10.9   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-06     0.023      41     106 ..     161     226 ..     119     236 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.6e-06
    TIGR02632  41 evlWvkGsGgdlatltaanfaslrldklrelkevykgvetedemvalldhclfnlngraasidtal 106
                  + l+ k  Gg  + +++++  +l  d++ +l  + ++ +++d+m++ l++ + +ln++a  i t +
  MMETSP1174-20130828|10537_1 161 HDLFKKKEGGGSGGSSNEQTEALTSDQMSKLEMIDRNKAEQDKMLGELEFVVDDLNDKAQKIKTEV 226
                  446778888888999999999*****************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 927.07
//
Query:       MMETSP1174-20130828|10544_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 828.77
//
Query:       MMETSP1174-20130828|10546_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   10.5   0.7        3.1    5.0   0.0    2.0  2  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0   0.00076       3.1     153     169 ..       7      23 ..       1      33 [. 0.83
   2 ?    4.5   0.1    0.0011       4.5     153     168 ..      47      62 ..      39      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00076
    TIGR02311 153 enleeiaaveGvdGvfi 169
                  en+ee  +++GvdG+ +
  MMETSP1174-20130828|10546_1   7 ENMEETEETDGVDGIAL 23 
                  79************976 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0011
    TIGR02311 153 enleeiaaveGvdGvf 168
                  en+ee  +++GvdG+ 
  MMETSP1174-20130828|10546_1  47 ENMEETEETDGVDGIA 62 
                  79************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 275.98
//
Query:       MMETSP1174-20130828|10545_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 901.93
//
Query:       MMETSP1174-20130828|10549_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 402.57
//
Query:       MMETSP1174-20130828|10541_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   26.0   0.0    2.5e-06   24.9   0.0    1.5  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   6.1e-10   2.5e-06      83     216 ..     115     257 ..      98     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.1e-10
    TIGR00065  83 iGrkaAeeskdeikkllegadlv...fitaGlGgGTGTGa.aPvvakiakel...giLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk..lplkeafkvadevlvkavkgiselItkpglinvDF 216
                   G+++ ++  d ++k+ e+ d      +t  +GgGTG G  +  ++ki +e     + t +v+  P   +      +A+  +++L + +D    ++N+ l +++ +  + ++  +   ++++  a+ g +  +  pg++n D 
  MMETSP1174-20130828|10541_1 115 EGAELIDSVLDVVRKEAESCDCLqgfQLTHSMGGGTGSGMgTLLISKIREEYpdrVMTTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRtlKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDL 257
                  466777788888999999988753324999*********636789***998533145678*******************************************98875567789**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1484.88
//
Query:       MMETSP1174-20130828|10550_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.5   0.0      0.041   10.9   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.9e-06     0.041      21      67 ..     124     175 ..     107     179 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.9e-06
    TIGR00601  21 etvkelKekiesekgkd.....ayevaqqkLiyaGkiLsDdktvkeykikek 67 
                  +tv  lKeki+s +        a++ ++  L + G  ++D + ++ y+i ++
  MMETSP1174-20130828|10550_1 124 TTVRGLKEKIDSTQKEAgeggvACPASKLDLFFGGEFMKDTEDIETYRIRDG 175
                  799*******9877542233338**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1002.29
//
Query:       MMETSP1174-20130828|10551_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1252  (0.305217); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                        30  (0.00731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.86u 0.20s 00:00:01.06 Elapsed: 00:00:00.90
# Mc/sec: 261.05
//
Query:       MMETSP1174-20130828|10552_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1275.89
//
Query:       MMETSP1174-20130828|10557_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|10560_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 455.36
//
Query:       MMETSP1174-20130828|10559_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-18   63.4   0.0    1.9e-10   38.1   0.0    2.3  2  TIGR03417 chol_sulfatase: choline-sulfatase
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.021   11.8   0.0    1.4  1  TIGR03397 acid_phos_Burk: acid phosphatase, Burkholderia-type


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0     9e-14   1.9e-10       1     103 [.      12     119 ..      12     137 .. 0.80
   2 !   23.2   0.0     3e-09   6.1e-06     233     364 ..     238     380 ..     188     441 .. 0.70

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 9e-14
    TIGR03417   1 trpnililmvdqlagtllpaygpaevlka.PnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefa..sdip.t...yahylraaGyktalsGkmhf 103
                  t+pnilil vd l    +   ++ e+ ka  +++rl++ ++ +d+ yt sP c+ +rasll+G++P+r+g  d   + +    +p t       lr++Gykt+  Gk h+
  MMETSP1174-20130828|10559_1  12 TKPNILILYVDDLGYGDIGY-NNVEFAKAtRTINRLSNSGIILDQFYT-SPTCTASRASLLTGRFPARLGLQDSVIHSTepRGVPlTevlLPERLRETGYKTIALGKWHL 119
                  69***********9887775.67788775168************9997.8***********************876543112343122225789*************996 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 3e-09
    TIGR03417 233 lkaldlkekditeeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdml..GerG..lw.ykmsffegsarvPllvaap........erleagrveaavstvdllPtlvelagveleevlpaldGeslvpll 364
                   + ++  ++  +++q  + rr   + +s vd+    +   l+e++  d+t+++f sd G ++  G     l   k +++eg+ rvP + +          +  ++ + +a     d+  t+ ++ag +++     +dG s    l
  MMETSP1174-20130828|10559_1 238 QNGCHELKFRTSDRQFATMRRKLCGMVSMVDQSTQTITGRLKESGKWDETVMIFLSDNGGIVrhGSSNapLRgEKGQYYEGGIRVPAFFSGGfvekellrTSTAPYMSKALCHVTDIFATILAIAGSHIDPG--DIDGVSQWDSL 380
                  45666778889999*********************************************998333322113225889*********9987541111111122334444444455688888888888877654..34665544433 PP

>> TIGR03397  acid_phos_Burk: acid phosphatase, Burkholderia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     1e-05     0.021     367     430 ..     266     334 ..     261     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1e-05
    TIGR03397 367 aGdrhiaevikklqksPqwknmvvvvtydenGGfwdhvap..P....kGdrwGPGtriPalvvsPfakkG 430
                    d+  +++  +l++s +w+++v++    +nGG+  h ++  P    kG  +  G r+Pa+    f  k 
  MMETSP1174-20130828|10559_1 266 MVDQSTQTITGRLKESGKWDETVMIFLS-DNGGIVRHGSSnaPlrgeKGQYYEGGIRVPAFFSGGFVEKE 334
                  56888889999**********9988766.599999986532223334778899*******9988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 1378.55
//
Query:       MMETSP1174-20130828|10567_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-46  154.6   0.1    4.2e-29   99.2   0.0    2.0  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    3.2e-36  122.8   0.1    4.2e-23   79.5   0.0    2.0  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    6.5e-05   20.0   0.1    6.5e-05   20.0   0.1    1.6  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    0.00056   16.6   0.0    0.00075   16.2   0.0    1.1  1  TIGR01234 L-ribulokinase: L-ribulokinase
     0.0015   15.0   0.0      0.002   14.5   0.0    1.2  1  TIGR01312 XylB: xylulokinase


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   5.1e-32   4.2e-29     180     328 ..       6     155 ..       2     161 .. 0.89
   2 !   53.5   0.0   3.4e-18   2.8e-15     323     384 ..     182     243 ..     171     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 5.1e-32
    TIGR02350 180 kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkk..eegidL.skdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidev 328
                  ++ e+ lv dlGGGtfdv+il++g g+++v+  +Gd++LGGddfd +i d+la+ f +  +e+i        a +rl + ae a+ eLs  ++++i +p +  d +g   l  +ltr +fe l+++lv r+++++  + ++a+ls   + ev
  MMETSP1174-20130828|10567_1   6 DSTERTLVVDLGGGTFDVAILDVGSGAVKVLGVKGDSRLGGDDFDAAIADWLADMFFNalDESIPAcPLSGLARRRLLDTAEMARRELSKHKQVNITVPGLLEDGRGIDGL--HLTRRQFEVLCQPLVARMRSTIIGVAQEAQLSLPGLSEV 155
                  6778999************************************************9762245665414567899****************************999999887..699***************************998766665 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 3.4e-18
    TIGR02350 323 seidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkgevkdvlLld 384
                    i++v+lvGG+tr+P + ++v+ l+g +p+ +vnPde++a+Ga+i ++ l g + d+ L+ 
  MMETSP1174-20130828|10567_1 182 VPIENVVLVGGATRMPLIGRMVRGLTGITPRGTVNPDEAIALGASIHAASLDGLIDDLRLVR 243
                  5699*****************************************************99876 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   5.1e-26   4.2e-23     177     317 ..       4     155 ..       3     162 .. 0.85
   2 !   41.3   0.0   1.8e-14   1.5e-11     313     363 ..     183     233 ..     177     242 .. 0.93

  Alignments for each domain:
  == domain 1    score: 79.5 bits;  conditional E-value: 5.1e-26
    TIGR01991 177 dkaseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil.......kkagleaelskeekkellkaaraakeaLtdaeevevevkl...egkdlk.aklsreeleelieelvkktleivrralrdaglkveeikev 317
                  d+ s +  +v DLGGGtFDv+iL + +G  +vl+  Gds LGGDDfD a+a+++        +++     ls   ++ ll++a++a+++L+++++v+++v     +g+ ++  +l+r ++e l ++lv +  +++  + ++a+l++  ++ev
  MMETSP1174-20130828|10567_1   4 DQDSTERTLVVDLGGGTFDVAILDVGSGAVKVLGVKGDSRLGGDDFDAAIADWLAdmffnalDESIPACPLSGLARRRLLDTAEMARRELSKHKQVNITVPGlleDGRGIDgLHLTRRQFEVLCQPLVARMRSTIIGVAQEAQLSLPGLSEV 155
                  56677778999******************************************99777755333333367888999**********************9953235666665268******************************98877776 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 1.8e-14
    TIGR01991 313 eikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLa 363
                   i++vvlvGG+tr+pl+ ++v+ l + +p  +++Pde +AlGA+++a  L 
  MMETSP1174-20130828|10567_1 183 PIENVVLVGGATRMPLIGRMVRGLTGITPRGTVNPDEAIALGASIHAASLD 233
                  589********************************************9986 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   7.9e-08   6.5e-05     152     197 ..      11      61 ..       5      69 .. 0.79
   2 ?   -2.7   0.1      0.61     5e+02     284     323 ..     187     226 ..     182     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.9e-08
    TIGR00904 152 smvvdiGGGttevavislg.Givvsksi....rvaGdeldeaiikyirrky 197
                   +vvd+GGGt +va++ +g G v    +    r++Gd++d ai +++   +
  MMETSP1174-20130828|10567_1  11 TLVVDLGGGTFDVAILDVGsGAVKVLGVkgdsRLGGDDFDAAIADWLADMF 61 
                  79**************99647776555444449**********99987665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.61
    TIGR00904 284 ivltGGGallknldkllsketklpvivaedpllavalGtG 323
                  +vl GG + +  + +++   t+++   + +p +a+alG+ 
  MMETSP1174-20130828|10567_1 187 VVLVGGATRMPLIGRMVRGLTGITPRGTVNPDEAIALGAS 226
                  7899999999999999999999998888888888888876 PP

>> TIGR01234  L-ribulokinase: L-ribulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.2e-07   0.00075     430     492 ..     178     240 ..     175     259 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9.2e-07
    TIGR01234 430 kesGvaveellaaGGiaeknplvmqiyadvlnl.plkivasdqapalGaaifaavaageyadip 492
                  ++s v++e+++ +GG  ++ pl+ +++  ++++ p   v  d a alGa+i+aa   g  +d++
  MMETSP1174-20130828|10567_1 178 RRSTVPIENVVLVGGA-TRMPLIGRMVRGLTGItPRGTVNPDEAIALGASIHAASLDGLIDDLR 240
                  5799***********7.999***********9736779999*************9998888876 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.5e-06     0.002     386     457 ..     179     251 ..     172     270 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.5e-06
    TIGR01312 386 lkglkikeirliGGGaksevwrqiladilglevv.vpeeeegaalGaAilAaialgekdlveecseavvkqke 457
                  +++++i++++l+GG ++ ++  ++++ ++g + + + + +e+ alGa i Aa   g  d++ ++++   + ++
  MMETSP1174-20130828|10567_1 179 RSTVPIENVVLVGGATRMPLIGRMVRGLTGITPRgTVNPDEAIALGASIHAASLDGLIDDLRLVRAPPRRVTD 251
                  56799*************************87652667**************999988888877776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 957.77
//
Query:       MMETSP1174-20130828|10568_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1174-20130828|10565_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 512.96
//
Query:       MMETSP1174-20130828|10564_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-55  187.1   0.0    1.3e-55  186.8   0.0    1.1  1  TIGR03376 glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
    5.7e-08   29.8   0.1    8.4e-08   29.3   0.1    1.2  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
      2e-05   21.4   0.0    2.9e-05   20.8   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
    8.4e-05   19.8   0.1    0.00021   18.5   0.0    1.7  2  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
     0.0003   17.8   0.4    0.00051   17.0   0.2    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00065   16.0   0.1     0.0011   15.3   0.1    1.3  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00085   16.0   0.1     0.0013   15.4   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0014   15.4   0.5     0.0021   14.8   0.3    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0015   16.1   0.0     0.0023   15.5   0.0    1.2  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
     0.0023   15.7   0.0      0.004   15.0   0.0    1.3  1  TIGR01915 npdG: NADPH-dependent F420 reductase
     0.0036   13.8   0.4      0.006   13.0   0.3    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0044   12.3   0.1      0.006   11.8   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR03376  glycerol3P_DH: glycerol-3-phosphate dehydrogenase (NAD(+))
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.0   3.7e-58   1.3e-55       1     338 [.      17     330 ..      17     334 .. 0.93

  Alignments for each domain:
  == domain 1    score: 186.8 bits;  conditional E-value: 3.7e-58
    TIGR03376   1 kvavvGsGnwGtaiAkivaenakalpelfeekvkmwvfeekiegkkltevineehenvkyLpgiklpenlvavpdleeaakdadilvfviPhqflekilkqlkgkvkkkaraisclkGlevskdgvkllsdiieeelgi.acgvlsGanlAnevAkekfsettvaykepkdfdvdaevlkalferpyFrvsvvedvagveiagalknvvAiaaGfveGlelgdnakaAvlrlGllemikfaklffeesevtlveesaGvaDlittClg..gRnvkvaealaktgksleelekellngqklqGvatakeveellkkknleeefPlfeavykilyeelkikkl 338
                  kvav+GsG++Gta+A + a+n         ++v m+       +  +   +ne+h+n +y+++ +lp nlva+ ++eea+++a +++  iP q l+++l++ ++ +  +++  s  kGl  + d++ l s ++     i +++ lsG+++A e+ k++ + + va k      ++a+ +++ ++++ Frv + +d  gve++g+lkn +A++aGf+eGl+lg n+ aA + +   e++ + +++ +e++  ++ +++G++Dl++t  g  +Rn+++++ la+ g  le++    l   +++Gv ta+   ++++ +n++   P+f++v +il ++l++++ 
  MMETSP1174-20130828|10564_1  17 KVAVLGSGAFGTAMATVAARNG--------HSVYMYAR-----DPAVVASVNEQHKNPRYVKEFTLPVNLVATQSIEEACQGAKLIMLAIPAQKLPGFLEENRDIIPSDVILCSTAKGLYLK-DKCLLSSAMLASLDRIqPLAFLSGPSFAAEIMKGNPTLVVVASKY----LYHAAAVQRWLSTADFRVYTSQDTVGVELGGSLKNPLAVGAGFIEGLGLGVNTMAAFVTRSSGELQMLCQAMGGEAD--TISGLSGIGDLMLTAFGdlSRNRTCGMRLAR-GEKLEDI----LATTTVEGVPTAEVAVHFATLCNID--CPIFQTVAEILNGSLSPEAA 330
                  69*******************9........68999999.....55556679********************************************************************998.99999999999888763699***************9999999877....8999********************************************************************99988..9****************99***********9.7777665....6679*******************99..***********999998865 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.5e-10   8.4e-08       5      45 ..      15      54 ..      13      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.5e-10
    TIGR02279  5 vvkvaviGaGamGaGiaqvaaraGhtvllydiraealarav 45
                 v+kvav+G+Ga G+ +a vaar+Gh+v++y   +  +a +v
  MMETSP1174-20130828|10564_1 15 VQKVAVLGSGAFGTAMATVAARNGHSVYMYARDPAVVA-SV 54
                 79****************************87775555.44 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.4e-08   2.9e-05       2      86 ..      17      95 ..      16     100 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 8.4e-08
    TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitVpT 86
                 k+av+G G  G ++a + a++gh+V++   d  +v+++n+++ +       +++k+ +   +l at +ieea++ a++i++++p 
  MMETSP1174-20130828|10564_1 17 KVAVLGSGAFGTAMATVAARNGHSVYMYARDPAVVASVNEQHKN------PRYVKEFTLPVNLVATQSIEEACQGAKLIMLAIPA 95
                 89*************************************99843......345555555668*******************9995 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.2e-07   0.00021       1      99 [.      17     116 ..      17     128 .. 0.75
   2 ?   -3.2   0.0       2.4   8.3e+02     276     298 ..     299     321 ..     282     323 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.2e-07
    TIGR00745   1 kiailGaGAvGsllgakLaragadVtllars.kqlealnqeGLsisklege...eekkvpveaaedpetls.kaDlllvtvKayqteealakllpyigkntvvl 99 
                  k+a+lG+GA G+++++  ar g+ V++ ar+ + ++++n++     k+ +    +++ v++ a+++ e++   a l++++  a ++   l++ + +i ++ +++
  MMETSP1174-20130828|10564_1  17 KVAVLGSGAFGTAMATVAARNGHSVYMYARDpAVVASVNEQH----KNPRYvkeFTLPVNLVATQSIEEACqGAKLIMLAIPAQKLPGFLEENRDIIPSDVILC 116
                  79******************************9999999884....3333343366777777777777776778888887777666666666666666555555 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.4
    TIGR00745 276 avvklAeklgldaPvlellyall 298
                    v+ A   ++d+P  ++++++l
  MMETSP1174-20130828|10564_1 299 VAVHFATLCNIDCPIFQTVAEIL 321
                  56888999999999999998877 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.5e-06   0.00051       2      38 ..      17      52 ..      16      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-06
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGA 38
                 +v+v G+G  G+a+A  aar+G++V +  r+++++ A
  MMETSP1174-20130828|10564_1 17 KVAVLGSGAFGTAMATVAARNGHSVYMYARDPAVV-A 52
                 699**************************998664.4 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   3.2e-06    0.0011     378     424 ..      14      60 ..       3      85 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.2e-06
    TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaakl 424
                  + +kv v+G+G  G + a+ aar Gh+v ++ r+ ++   v+   k 
  MMETSP1174-20130828|10564_1  14 EVQKVAVLGSGAFGTAMATVAARNGHSVYMYARDPAVVASVNEQHKN 60 
                  4589*****************************99887777766555 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.8e-06    0.0013     128     163 ..      10      45 ..       3      56 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.8e-06
    TIGR01316 128 kapstkkkvaviGaGpaGlavaselakkGhevtvfe 163
                  + ++  +kvav+G+G  G a+a+  a++Gh+v ++ 
  MMETSP1174-20130828|10564_1  10 RDDGEVQKVAVLGSGAFGTAMATVAARNGHSVYMYA 45 
                  5678889*************************9995 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   6.2e-06    0.0021     144     175 ..      16      47 ..       7      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.2e-06
    TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvfere 175
                  +kvav+GsG  G a a   +r Gh+v ++ r+
  MMETSP1174-20130828|10564_1  16 QKVAVLGSGAFGTAMATVAARNGHSVYMYARD 47 
                  79***************************997 PP

>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.6e-06    0.0023       1      99 [.      18     124 ..      18     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.6e-06
    TIGR00112   1 iaiiGaGnmgeallsgllkkg....akakkeilviers.eeklaalakelg....vevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvti 99 
                  +a++G G  g+a+++ + ++g      a+++ +v+  + ++k  + +ke+       +t++ eea++ a++++la+  q+l+ +l+e ++     + +l S + G+ +
  MMETSP1174-20130828|10564_1  18 VAVLGSGAFGTAMATVAARNGhsvyMYARDPAVVASVNeQHKNPRYVKEFTlpvnLVATQSIEEACQGAKLIMLAIPAQKLPGFLEENRD-IIPSDVILCSTAKGLYL 124
                  689*************9999988885566777777766566666666666544336677777***********************98776.55567777788777765 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.004       2     108 ..      17     125 ..      16     136 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-05
    TIGR01915   2 kiavlGGtGdqGkGlalRlAkageeiiiGsRdkekAeeaAkkale..eleekGdeikveGlen.eeaAkradvvilavpldavlktleslkeeleadklvisavvplasa 108
                  k+avlG  G  G+ +a   A +g+ + + +Rd+   +   ++ ++   ++e    +++   +  eea + a +++la+p+++    le+ ++ + +d ++ s++ +l  +
  MMETSP1174-20130828|10564_1  17 KVAVLG-SGAFGTAMATVAARNGHSVYMYARDPAVVASVNEQHKNprYVKEFTLPVNLVATQSiEEACQGAKLIMLAIPAQKLPGFLEENRDIIPSDVILCSTAKGLYLK 125
                  799996.7***********************998766555544431156666666776665542788999********************************99999774 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   1.8e-05     0.006     142     176 ..      16      50 ..       8      55 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.8e-05
    TIGR01318 142 krvaviGaGpaGlacadvlaraGvkvvvfdrypei 176
                  ++vav+G+G  G a a v ar+G  v ++ r p++
  MMETSP1174-20130828|10564_1  16 QKVAVLGSGAFGTAMATVAARNGHSVYMYARDPAV 50 
                  79*****************************9987 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.8e-05     0.006     530     577 ..       8      55 ..       2      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
    TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  ++  ++e +kvav+G+G  G + + + ar+G++v ++ ++  +   v+
  MMETSP1174-20130828|10564_1   8 AARDDGEVQKVAVLGSGAFGTAMATVAARNGHSVYMYARDPAVVASVN 55 
                  566778889**************************9998876665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 875.70
//
Query:       MMETSP1174-20130828|10569_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|10573_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|10576_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-24   82.8   0.0    3.4e-24   82.6   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.3e-06   23.9   0.1    7.7e-06   23.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00027   17.4   0.0    0.00037   17.0   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   2.5e-27   3.4e-24      34     213 ..       2     179 ..       1     207 [. 0.82

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 2.5e-27
    TIGR03903  34 rLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedade.atltrttevlGsPaYaaPeqLR.gepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsai 213
                  +L+h +iv+ +D  ++ d +l    e++e   l +vL+  G+ + ++t+   +q+L +l   h++Gv+hRD+k  ni++s+ +     k+ DFG++  l + +  +e +    t + +GsP + aPe +    p+t++ D+++    v+e +tG +     s    l++ ++ +   lP  i
  MMETSP1174-20130828|10576_1   2 KLNHQHIVKYIDTIRTVD-YLHIALEFMESGSLSQVLKRYGVFSEHTTAIYSIQILQGLGYLHEQGVLHRDIKAANILISKDGR---IKLADFGVAMKLGQSKTSEEsQSQSETFDAVGSPYWMAPEIIEmSAPPTSACDIWSVACTVVELVTGAPPYLDLSPVSALFRIVTDDYPPLPGLI 179
                  79**************99.99999********************************************************9886...5788****987776666555155677889***********99736799*******************9766666666666666665555565555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.6e-09   7.7e-06      73     138 ..      22      95 ..      12     112 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 5.6e-09
    TIGR03724  73 kivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  +i +e +e+  l+++l++           +  ++ + +g lH++g++h D+  +Ni++ kd+++ l DfG + k
  MMETSP1174-20130828|10576_1  22 HIALEFMESGSLSQVLKRYGVfsehttaIYSIQILQGLGYLHEQGVLHRDIKAANILIsKDGRIKLADFGVAMK 95 
                  677777777777777776555565554344556778899*****************9956899*******9876 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.7e-07   0.00037     272     310 ..      62     100 ..      15     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.7e-07
    TIGR01982 272 vlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                    ++g+ H D+ + Nil++kdg+i + DfG+  +l +++
  MMETSP1174-20130828|10576_1  62 LHEQGVLHRDIKAANILISKDGRIKLADFGVAMKLGQSK 100
                  56789**************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 717.22
//
Query:       MMETSP1174-20130828|10577_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.021   12.3   0.0    1.3  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-06     0.021     176     228 ..       3      59 ..       1      77 [. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-06
    TIGR01738 176 aevDlRralqkisvPvLrlyGqkDalvPakvvea..ldklap..qsellvlekaaha 228
                  + v+ R+ + ++++P+L ++G++D l P+    a   d+  p     + v+++a+h 
  MMETSP1174-20130828|10577_1   3 DSVNERNVVRELTLPLLAVVGELDWLLPSMEEAArlRDACEPerWRGTTVVQGAGHG 59 
                  57889***********************75332200222223222334556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 509.10
//
Query:       MMETSP1174-20130828|10574_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|10572_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 1183.19
//
Query:       MMETSP1174-20130828|10575_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-163  542.1   0.0   1.4e-163  541.8   0.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
      4e-98  326.2   0.0    4.7e-98  326.0   0.0    1.0  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    1.7e-38  130.8   0.0    3.9e-38  129.6   0.0    1.5  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    2.4e-22   77.2   0.0      3e-21   73.6   0.0    2.4  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    5.7e-12   43.2   1.0      5e-05   20.4   0.0    4.0  4  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.8   0.0  1.7e-166  1.4e-163       4     356 ..      47     399 ..      44     400 .] 0.98

  Alignments for each domain:
  == domain 1    score: 541.8 bits;  conditional E-value: 1.7e-166
    TIGR01520   4 klktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelsk.ispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnaink 356
                   +k+gv++g+ + +l+++ak+++faiPa+n+v+s ++na leaa +++ pii+qfs+gg +f aGkG +++ + a siaG++a+a +vr+iae ygvpv+lhtdhCak  lp++dgll+a+eky++k+g+Plfsshmldlseep+eeniei+k yl+rmaki+l+le+e+GitGGeedGvdn+++d++ lytkPe+v++vye l +  ++ f++aaafGnvhGvy+pGnvkl+P+il+d+q+y++eklg +++kp++fvfhGGsGs++++i+ a++ G +k+n+dtdtq+a++ g++ y  kn++ylq+q+Gnp+g+ekpnkk+ydPr+ lr+ae+ m++r+ +a+e+ln++n+
  MMETSP1174-20130828|10575_1  47 SVKPGVVTGQALLDLLQYAKDKEFAIPAVNCVASCSINACLEAASQSGGPIIVQFSRGGGQFNAGKGAQNDGDAA-SIAGSVAGALHVRTIAELYGVPVILHTDHCAKSWLPWFDGLLDANEKYYEKNGEPLFSSHMLDLSEEPLEENIEICKSYLERMAKIDLLLEMELGITGGEEDGVDNSDVDTSLLYTKPEEVWQVYESLASvPNGMFTVAAAFGNVHGVYAPGNVKLEPQILHDTQAYISEKLGGDDKKPVFFVFHGGSGSSVDDIRYAIKAGTIKMNIDTDTQWAFWDGLRAYEAKNREYLQGQIGNPEGPEKPNKKYYDPRMSLRAAEQYMTSRLCQAMEDLNCVNV 399
                  689*******************************************************************88776.********************************************************************************************************************************9945899********************************************************************************************************************************************986 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.0   0.0  5.7e-101   4.7e-98       4     289 ..      56     399 ..      53     400 .] 0.97

  Alignments for each domain:
  == domain 1    score: 326.0 bits;  conditional E-value: 5.7e-101
    TIGR00167   4 vdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkk.sqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs..........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsank 289
                  + +  ll++ak +++aipa+N+v + si+a leaa+++  P+i+q+s+g+ ++ aG             + +a++ ++++ ae y+vPv+lH+DH+a             +e++++++++++fsS+M+D+Seep+eeNie++k+++e+++k+++ +E+ElGi+ggeedgvdns++d+s lyt+pe    +++ l+++  +++++Aaa+GnvHGvY+++++kL++++l+++q ++s          + +V+HGgsg++ ++i+ aik G++K+NidTd+q+Af++++r y ++n+++                  ydpr  l++ae++m+ ++ +++++l++ n 
  MMETSP1174-20130828|10575_1  56 QALLDLLQYAKDKEFAIPAVNCVASCSINACLEAASQSGGPIIVQFSRGGGQFNAGkgaqndgdaasiAGSVAGALHVRTIAELYGVPVILHTDHCAkswlpwfdglldaNEKYYEKNGEPLFSSHMLDLSEEPLEENIEICKSYLERMAKIDLLLEMELGITGGEEDGVDNSDVDTSLLYTKPEevwqVYESLASVpNGMFTVAAAFGNVHGVYAPGNVKLEPQILHDTQAYISeklggddkkpVFFVFHGGSGSSVDDIRYAIKAGTIKMNIDTDTQWAFWDGLRAYEAKNREYlqgqignpegpekpnkkyYDPRMSLRAAEQYMTSRLCQAMEDLNCVNV 399
                  556689**************************************************************9********************************************************************************************************************7777778888764679********************************************************************************************************************************************996 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   4.8e-41   3.9e-38       6     279 ..      60     397 ..      54     400 .] 0.82

  Alignments for each domain:
  == domain 1    score: 129.6 bits;  conditional E-value: 4.8e-41
    TIGR01859   6 ellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlg..............gikvvvalvkalieklsivPvalhLDhGss.....yescikaika.....G...fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvekeae....ladideakklvket.....gvDaLaiaiGtshGkykge.....pkldferlkeikkll....nlPl..vlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealkevvkekikvlgsa 279
                  +ll+ ak++++a++a+n      ++a leaa+++  P+ivq s g  ++ +              g  + +  v++++e +  vPv+lh Dh  +     ++  ++a ++     G   fss m+D s+ pleen++  k  +e   +  +  e+elG  gG+ed+v++ ++     +++++e+ ++ + +     g+ ++a+a G++hG y        p++  ++ + i+++l    + P+  v hG+sG + ++++ aik g+ k+nidtd++ af + +r + +                   +k+ ydpR  l  a++ + + + + ++ l+  
  MMETSP1174-20130828|10575_1  60 DLLQYAKDKEFAIPAVNCVASCSINACLEAASQSGGPIIVQFSRGGGQFNAgkgaqndgdaasiaGSVAGALHVRTIAELYG-VPVILHTDHCAKswlpwFDGLLDANEKyyeknGeplFSSHMLDLSEEPLEENIEICKSYLERMAKIDLLLEMELGITGGEEDGVDNSDVDtsllYTKPEEVWQVYESLasvpnGMFTVAAAFGNVHGVYAPGnvklePQILHDTQAYISEKLggddKKPVffVFHGGSGSSVDDIRYAIKAGTIKMNIDTDTQWAFWDGLRAYEAknreylqgqignpegpekPNKKYYDPRMSLRAAEQYMTSRLCQAMEDLNCV 397
                  79**********************************************9887889999877765333333344777777777.*********9754555577777776431112246669**********************************************9987763333389*****99988642222267899*********775433444466666666677777644333564449*************************************998878999999*********9877889**************99999988887765 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   3.6e-24     3e-21       6     250 ..      60     350 ..      56     355 .. 0.74

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 3.6e-24
    TIGR01858   6 ellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyag...tee......l...v..al.vsaaakkyelplalhldhhes........lddikqkv..aaG...vksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdeeda..lytdpdeakefvea.....tGvdslavaiGtahGlyke.....apkldfdrlakirekvd......vplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfienpe 250
                  +ll+ a+   +a+pa n     ++++ +e+a++   p+i+  + g  ++ +   +++      +   v  al v+++a+ y +p+ lh dh  +        l d ++k   + G   + s m+d s  ++een+++ k+ ++   + d  +e elG  gG ed +   + d+  lyt+p+e  +  e       G+ ++a a G  hG+y+       p++  d  a i ek        v +v+hG+s+ + +++r +i+ G  k+n+ t+ + af d l+ay ++n+e
  MMETSP1174-20130828|10575_1  60 DLLQYAKDKEFAIPAVNCVASCSINACLEAASQSGGPIIVQFSRGGGQFNAgkgAQNdgdaasIagsVagALhVRTIAELYGVPVILHTDHCAKswlpwfdgLLDANEKYyeKNGeplFSSHMLDLSEEPLEENIEICKSYLERMAKIDLLLEMELGITGGEEDGVDNSDVDTslLYTKPEEVWQVYESlasvpNGMFTVAAAFGNVHGVYAPgnvklEPQILHDTQAYISEKLGgddkkpVFFVFHGGSGSSVDDIRYAIKAGTIKMNIDTDTQWAFWDGLRAYEAKNRE 350
                  7999***********************************97554433332101111111111121111112235778999***********76533333212334444431223344489********************************************997665443339******99988753333369999************742222257777888888887652223333889*****************************************998875 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.1e-08     5e-05       5      55 ..      59     109 ..      56     156 .. 0.70
   2 !    5.4   0.0    0.0022       1.8     147     199 ..     213     270 ..     200     280 .. 0.74
   3 !   12.8   0.0   1.2e-05    0.0097     255     295 ..     310     350 ..     303     356 .. 0.91
   4 ?   -2.4   0.0      0.51   4.2e+02     293     316 ..     366     390 ..     363     393 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.1e-08
    TIGR01521   5 rqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsya 55 
                    ll++a ++ + +pa n      i a +eaa ++  p+i+q srg  ++ 
  MMETSP1174-20130828|10575_1  59 LDLLQYAKDKEFAIPAVNCVASCSINACLEAASQSGGPIIVQFSRGGGQFN 109
                  56999****************************************976653 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0022
    TIGR01521 147 letg.kgeaedghgfegaldrsqlltdpeeaaefvkk.....tkvdalavaigtshgay 199
                  +e g +g++edg+  +  +d s l t pee  +  +       ++ ++a a g  hg y
  MMETSP1174-20130828|10575_1 213 MELGiTGGEEDGVD-NSDVDTSLLYTKPEEVWQVYESlasvpNGMFTVAAAFGNVHGVY 270
                  56662467899987.5689***********98876542111134567888999999998 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 1.2e-05
    TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrvaakdps 295
                  g  v++i   ik g  k+nidtd + a    lr   ak+++
  MMETSP1174-20130828|10575_1 310 GSSVDDIRYAIKAGTIKMNIDTDTQWAFWDGLRAYEAKNRE 350
                  7889*****************************99999986 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.51
    TIGR01521 293 dpsefdprkflkkaveamk.dvcka 316
                  +++ +dpr  l+ a ++m   +c+a
  MMETSP1174-20130828|10575_1 366 NKKYYDPRMSLRAAEQYMTsRLCQA 390
                  67889*********99996256765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 1257.04
//
Query:       MMETSP1174-20130828|10582_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|10579_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   13.9   0.1     0.0031   13.4   0.1    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   7.6e-07    0.0031     686     761 ..     223     293 ..     220     295 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.6e-07
    TIGR02865 686 dvevekkklkngDlivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekalelrkgkikDDmTviva 761
                  dv ++k+k +++ +++l  DG+ +   + ++  + + k+  e   ++P+ +aeel+ + lel++    D m  i++
  MMETSP1174-20130828|10579_1 223 DVLIQKRKHDKDEIMILACDGIWDVMTN-QNATTHIAKYADE-GEQNPRLMAEELMCECLELKSR---DNMSAIIV 293
                  677899999***************9988.5577778777655.5678***************987...89988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1335.89
//
Query:       MMETSP1174-20130828|10583_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 773.08
//
Query:       MMETSP1174-20130828|10585_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|10590_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|10592_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1116.25
//
Query:       MMETSP1174-20130828|10599_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|10603_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 803.93
//
Query:       MMETSP1174-20130828|10600_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 998.38
//
Query:       MMETSP1174-20130828|10602_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-80  268.3   0.0    2.4e-44  149.9   0.0    2.1  2  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
    0.00015   19.9   0.0    0.00051   18.2   0.0    1.9  1  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE
  ------ inclusion threshold ------
      0.043   10.5   0.0      0.068    9.8   0.0    1.2  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.057   11.1   0.1       0.17    9.6   0.0    1.7  2  TIGR00152 TIGR00152: dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   3.6e-37   3.7e-34       4     122 ..      91     211 ..      88     216 .. 0.94
   2 !  149.9   0.0   2.3e-47   2.4e-44     128     305 ..     253     436 ..     241     440 .. 0.94

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 3.6e-37
    TIGR03167   4 pliDvRspaEfaegalpgalnlpllndeeraevGtlYkqkgqeeAvklGlelvaeklkelleevqelaekeke..vllyCwRGGlRSkslawllkeaglevlrleGGYKayRrlvldelee 122
                  p+iDvR+p E+++g++pg++n+pl++++++a+vG+ +k +g  +A+ ++++lv+++++ ll+ v+ +aek     + ++C RGG+RS s+awll+++g++  +l GGYK++R + l+ +++
  MMETSP1174-20130828|10602_1  91 PFIDVRTPREYDKGHIPGSINVPLMTNDQHAAVGRSFKAQGGGAAMVRAMRLVQPSIEGLLDVVRGIAEKAGTkrIGVHCKRGGMRSASVAWLLEQNGFKPFLLAGGYKSFRYFALNVYRT 211
                  79*************************************************************99999987766799************************************99987665 PP

  == domain 2    score: 149.9 bits;  conditional E-value: 2.3e-47
    TIGR03167 128 klvvlgGnTGsgKtelLeklaea.gaqvldLEglAnhrGSafGalgleeqpsqkeFenalaeallrldeerplvvEdEsrkiGrvalpealieamkkapl.vvveasleeRverlleeY.....ealeedaekleealekirkrlgkerveklkelleageleelvealleeyYDplYakqlekk 305
                  +++vlgG+TG+gKt++L+ l+++  aqvldLEglAnh GSafG   + +qp+++++ n  a+++++++e + +++EdE ++iG ++ p  l+++m++apl v+v  +le+R++ lle Y     +++e+++e ++ +++k++krlg +rv+++k++l +g++ +l+e+ll  yYD lY+k+ +++
  MMETSP1174-20130828|10602_1 253 RVCVLGGRTGTGKTRILKVLEQQhKAQVLDLEGLANHTGSAFGWCMNPPQPTDEQYGNICAMRWRSFKEGEWVFIEDEDNHIGGCSTPPMLYQRMRSAPLiVKVVIPLEARLQVLLERYacqeaRQMEDWQELMSVSIDKLKKRLGPQRVASAKAHLVSGDMGALTEILL-TYYDGLYDKHVANH 436
                  789***************998762589************************************************************************725799**************9999888999999**************************************.********998765 PP

>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     5e-07   0.00051      20      49 ..      91     120 ..      75     128 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5e-07
    TIGR02981  20 ywidvrvpeqyqrehvqgainiplkevker 49 
                   +idvr p +y++ h+ g+in+pl    ++
  MMETSP1174-20130828|10602_1  91 PFIDVRTPREYDKGHIPGSINVPLMTNDQH 120
                  58*********************9876655 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.6e-05     0.068      35      66 ..     247     278 ..     237     287 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.6e-05
    TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkvlkelee 66 
                  l+++ p+ +++ G+tGtGKt + k + ++ ++
  MMETSP1174-20130828|10602_1 247 LKNRGPRVCVLGGRTGTGKTRILKVLEQQHKA 278
                  56788999**************9988877665 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00016      0.17       4      31 ..     257     284 ..     254     290 .. 0.86
   2 ?   -2.0   0.0      0.57   5.9e+02     123     157 ..     353     387 ..     322     398 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
    TIGR00152   4 ltGgigsGKstvakilkdkyklpvidAD 31 
                  l G+ g+GK+ ++k+l+++ k +v+d  
  MMETSP1174-20130828|10602_1 257 LGGRTGTGKTRILKVLEQQHKAQVLDLE 284
                  779*********************9965 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.57
    TIGR00152 123 lvdkvivvevskelqlerlmkrdelseeevkkllk 157
                  +v+ vi +e+  ++ ler + ++  + e+ ++l+ 
  MMETSP1174-20130828|10602_1 353 IVKVVIPLEARLQVLLERYACQEARQMEDWQELMS 387
                  45666667777777777766666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 1105.98
//
Query:       MMETSP1174-20130828|10606_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 676.98
//
Query:       MMETSP1174-20130828|10604_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 2068.93
//
Query:       MMETSP1174-20130828|10607_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1499.88
//
Query:       MMETSP1174-20130828|10605_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-18   65.6   0.0    6.5e-09   33.5   0.0    2.5  2  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase


Domain annotation for each model (and alignments):
>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.6e-12   6.5e-09     154     275 ..     305     444 ..     262     461 .. 0.62
   2 !   29.4   0.0     3e-11   1.2e-07     273     348 ..     538     652 ..     525     657 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.6e-12
    TIGR01263 154 vgleaiDHvvgnvergelekvaefyekilgfkeiksfd..............ikteasaLkSk...vlasaegkvklplnepaskkkksQIeeyleeyeGaGvQHlAlntedi...vktveelrar...gveflkipetYYdnlk 275
                  + + + DH v nv +    +  +  +++lgf    +f+              +++++s Lk +   v+ +++ +v lp+n      + + +++yl+e  G+G+QH+A +++d+   ++  + lr+    g+ fl+ip tYY  + 
  MMETSP1174-20130828|10605_1 305 AVAAYCDHWVSNVFS--RVQFLDTLHDTLGFAPKVNFNagvvaagraqiestVTGNTSRLKTRdydVISEDQSQVFLPINN--ALTEFGHVDQYLKEI-GQGIQHVASRVKDLptlIQRANDLREVtgqGLSFLNIPPTYYGLVI 444
                  344567888888763..223333344444444444444444444555533346677777766455599999**********..67999*******985.9************63335555566664555************8765 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 3e-11
    TIGR01263 273 nlkervkk.lvkedleelkelkiLvDrdeeGlLLQiFtkpvv.drgtl...FfEiIqRk..................................gakGFGegNfkaLfeaiEreqe 348
                  nl + +++ l +    ++ ++kiLvD + + +L+QiF+  v  + g +   F+E+IqR                                   g+ GFG  Nf  Lf +iE  + 
  MMETSP1174-20130828|10605_1 538 NLYKVLGDnLDETTYLSIVRNKILVDVQGKDVLMQIFSSCVLiKTGQVegpFLEFIQRVcakkkgneggdschgendgsvtkcdaadevylkpGCGGFGIRNFLTLFLSIEVSKS 652
                  555555553334455677889*****************9764234444445************************************************************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.65
# Mc/sec: 1518.89
//
Query:       MMETSP1174-20130828|10610_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 291.98
//
Query:       MMETSP1174-20130828|10608_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 646.75
//
Query:       MMETSP1174-20130828|10611_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1174-20130828|10615_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   27.2   0.1    2.4e-07   27.1   0.1    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    6.8e-07   25.3   0.0    7.4e-07   25.2   0.0    1.0  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    7.9e-06   22.8   0.0    8.4e-06   22.7   0.0    1.1  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    3.8e-05   19.4   0.6    4.4e-05   19.2   0.4    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    0.00012   18.5   0.1    0.00013   18.4   0.1    1.1  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
     0.0006   15.9   0.0    0.00063   15.9   0.0    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
     0.0011   15.7   0.1     0.0014   15.4   0.1    1.0  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
     0.0029   13.6   0.0     0.0032   13.5   0.0    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
     0.0048   13.5   0.9     0.0064   13.0   0.6    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
  ------ inclusion threshold ------
      0.013   10.9   0.0      0.014   10.7   0.0    1.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      0.015   11.2   0.0      0.015   11.2   0.0    1.0  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   6.4e-10   2.4e-07     227     307 ..      27     110 ..      12     140 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.4e-10
    TIGR01116 227 iPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalek...efkvegttyepveaki 307
                  +P  +   + t + +   ++  +n   +k   vetlG+t+v+ ++k G lt+ + svak+v + +   e+k +gt+++  e + 
  MMETSP1174-20130828|10615_1  27 VPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDkeiEYKRTGTAFSHYEDTY 110
                  56666666677777777788778888888899******************************9643337999***998766554 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     2e-09   7.4e-07     299     377 ..      20     100 ..       7     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2e-09
    TIGR01106 299 igiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwf..dnqiheadtt 377
                  +g +++ vp  +   v  ++ ++  rl   n   k+   vetlg+tsv+ ++k g lt  r +va++ +  d++i    t 
  MMETSP1174-20130828|10615_1  20 VGGMISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYvgDKEIEYKRTG 100
                  666788999999999999************************************************976456666554443 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.2e-08   8.4e-06     195     279 ..      11      97 ..       1     138 [. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.2e-08
    TIGR01525 195 k.aealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse.see 279
                    + +l+++v  ++  +P a+ + + ++i +++g+   n i +k g+++E+l +++++v  K G LT  + +v ++ +++d+e + +
  MMETSP1174-20130828|10615_1  11 GlNISLVAGVGGMISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDKEiEYK 97 
                  234899999999*******************************************************************99886433 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.4   1.2e-07   4.4e-05     273     344 ..      19      90 ..       2     102 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.2e-07
    TIGR01522 273 svslavaaipeGlp..iivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvd 344
                  +v   ++ +p  +   +i ++ ++lG lr   ++   +k  +vetlG+  v+ ++k G lt+ + +v+ki  v+
  MMETSP1174-20130828|10615_1  19 GVGGMISIVPFAMQmcVITSIRISLGRLRD--NNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVG 90 
                  555556666665550055556667776665..556679******************************986554 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.4e-07   0.00013     162     240 ..      13      94 ..       1     125 [. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.4e-07
    TIGR01494 162 lkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqs 240
                    +++  +  +++++P a+++ v + + ++  rl    i +++ +++e+lg ++v++  K G LT+ + ++ k+v  g+++ 
  MMETSP1174-20130828|10615_1  13 NISLVAGVGGMISIVPFAMQMCVITSIRISLGRLRdnnISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDKEI 94 
                  456777888899********9998888888777643339********************************99987776554 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06   0.00063     244     313 ..      23      92 ..       5     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.7e-06
    TIGR01647 244 lvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkee 313
                  +++ +P a+++ + +++ +   +L  +++  kk s +E l +  +L ++k G lt  + s+ +++ v ++
  MMETSP1174-20130828|10615_1  23 MISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDK 92 
                  45568*****************************************************999998887765 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.7e-06    0.0014     210     292 ..      14      96 ..       3     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.7e-06
    TIGR01511 210 lalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelsesllal 292
                  ++l++ v  +i   P a+ + + +++ ++ g+  +n +  k+g+ +e++ +++++v  K G LT+ + +v ++  + ++ +++
  MMETSP1174-20130828|10615_1  14 ISLVAGVGGMISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDKEIEY 96 
                  57888899999999*********************************************************999888876665 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.7e-06    0.0032     313     393 ..      18      99 ..      10     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.7e-06
    TIGR01517 313 iavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvk.gyigeeavrnilv 393
                   +v  ++  vP ++ + v  ++  +  +l ++n   ++ +  et+G++  + ++k G Lt+ + sv k +y+g+++++   +
  MMETSP1174-20130828|10615_1  18 AGVGGMISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKiVYVGDKEIEYKRT 99 
                  556667778999999**************999999999999*************************9845777777665444 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.6   1.7e-05    0.0064     191     257 ..      22      88 ..      12      91 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
    TIGR01512 191 lLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdvea 257
                   ++   P a+ + v  ++  ++++   + i  k g ++e+l++++ ++  K G LT  + +v+++++
  MMETSP1174-20130828|10615_1  22 GMISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVY 88 
                  56677788888899999999999999999*******************************9999875 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05     0.014     407     477 ..      24      94 ..      17     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.9e-05
    TIGR01657 407 tivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee 477
                  +++vP a+ + +  ++  +l rL+ ++i + + + +++ G  +v++  K G LT+    +  +  + ++e 
  MMETSP1174-20130828|10615_1  24 ISIVPFAMQMCVITSIRISLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDKEI 94 
                  7889999999999999999************************************9988887777766654 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.1e-05     0.015     248     329 ..      14      95 ..       2     160 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.1e-05
    TIGR01497 248 isvsvlvallvalipttiG.GllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvqGadkk 329
                  is+   v  +++++p ++   ++++i i  + r+   n+ a  G  ve+ G   +lv +k G +t      ++++ v+ ++++
  MMETSP1174-20130828|10615_1  14 ISLVAGVGGMISIVPFAMQmCVITSIRI-SLGRLRDNNISAKKGSIVETLGTTSVLVAEKGGVLTSKRSSVAKIVYVGDKEIE 95 
                  4445556667778887765245666776.589********************************9887777777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 368.73
//
Query:       MMETSP1174-20130828|10613_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1283.38
//
Query:       MMETSP1174-20130828|10616_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|10617_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|10619_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   11.7  13.1     0.0089   11.6   9.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.032    9.7  13.3      0.035    9.5   9.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.24    8.4   8.3       0.25    8.4   5.7    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.26    8.3   8.0       0.16    9.0   1.4    2.1  2  TIGR00762 DegV: EDD domain protein, DegV family
       0.34    7.7  10.7       0.35    7.6   7.4    1.0  1  TIGR00414 serS: serine--tRNA ligase
       0.35    8.0  12.5       0.39    7.9   8.7    1.2  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
          1    6.2   8.3        1.2    6.0   5.8    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        1.2    7.0   6.1        4.7    5.2   1.0    2.4  2  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family
          3    4.2   7.5        3.3    4.1   5.2    1.0  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   9.1     2e-05    0.0089     291     775 ..      11      94 ..       1     107 [. 0.24

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
    TIGR02168 291 qelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleea 775
                  ++  +e ++l+ ++  ++e+++                                                                                                  +l+                                                                                                                                                                                                                                                                                                               ++l++e+++ +r   e+++el++l+++v++ ++r+  +e++lee++e+r++l+++ e+ 
  MMETSP1174-20130828|10619_1  11 EKSVKEAKKLKIRVVNTDEKMH--------------------------------------------------------------------------------------------------KLK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RQLEEEINHNKRLQVEENMELRQLRTSVNEQKARAVTAEEALEEIKESRAKLKAQFEKV 94 
                  1111111111111111111111..................................................................................................111...............................................................................................................................................................................................................................................................................................................22222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.2   7.8e-05     0.035     863     943 ..       9      86 ..       1     104 [. 0.23

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.8e-05
    TIGR02169 863 kleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevke 943
                  + e+  +e+++l+ +v + +e+ ++Lk++ ee  ++ ++l+ ++   ++e+ + r+ ++e+ka++ ++ee l+e++e+ ++
  MMETSP1174-20130828|10619_1   9 DCEKSVKEAKKLKIRVVNTDEKMHKLKRQLEEEINHNKRLQVEE---NMELRQLRTSVNEQKARAVTAEEALEEIKESRAK 86 
                  22222222222222222222222222222222222222221111...1111111111111111111111111111111111 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.7   0.00055      0.25      67     133 ..      30      99 ..       6     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00055
    TIGR03752  67 elkelrkelaklekeNeklk.kenerlkkreesvderiqqaleaek..kelkkekeqlkeeqakleelld 133
                  ++++l+++l++ +++N++l+ +en +l++ ++sv+e+ ++a++ae+  +e+k+++ +lk++ +k+ e+++
  MMETSP1174-20130828|10619_1  30 KMHKLKRQLEEEINHNKRLQvEENMELRQLRTSVNEQKARAVTAEEalEEIKESRAKLKAQFEKVVETSQ 99 
                  466788999999999*999746788999*9*******999999854224555555566555555544433 PP

>> TIGR00762  DegV: EDD domain protein, DegV family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.4   0.00035      0.16     207     254 ..       3      49 ..       1      55 [. 0.77
   2 ?    3.1   0.4     0.021       9.7     225     256 ..      68     100 ..      51     107 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00035
    TIGR00762 207 lkklvelvkeeikdkkkkrvaiihadaeeeaeelkeklkeklpek.eil 254
                  l+++++  ++ +k++k  ++ i  ++++e++++lk++l+e+++++ +++
  MMETSP1174-20130828|10619_1   3 LAEMTTDCEKSVKEAK--KLKIRVVNTDEKMHKLKRQLEEEINHNkRLQ 49 
                  5677788888888888..4677778888**************9773444 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.021
    TIGR00762 225 rvaiihadaeeeaeelkeklkeklpek.eilis 256
                    a++  +a ee++e ++klk++++++ e++ +
  MMETSP1174-20130828|10619_1  68 ARAVTAEEALEEIKESRAKLKAQFEKVvETSQA 100
                  346666667777777777777777654454444 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   7.4   0.00076      0.35      17      97 ..      16      96 ..       1     108 [. 0.60

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00076
    TIGR00414 17 klkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdk...ieelkkelkelkeeleeleaelkelee 97
                 + k+ ++ v  + ek+ +l+++l +++++ ++lq ++n   +++ +  +e+k++   +ee  +e+ke + +l+   a+++++ e
  MMETSP1174-20130828|10619_1 16 EAKKLKIRVVNTDEKMHKLKRQLEEEINHNKRLQVEENMELRQLRTSVNEQKARavtAEEALEEIKESRAKLK---AQFEKVVE 96
                 2333333344568999999999999999999999999998888888444444331223445555555555554...44433333 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.7   0.00087      0.39     112     200 ..      21     108 ..       5     109 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00087
    TIGR00570 112 nvdlektkkkleaykkenkeviqknkekltreqeeleealelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldvaeliae 200
                   + + +t++k+++ k++  e i +nk  + +e+ el ++    +e++ +    ++ le e k  ++k k ++ + +ets+ +v  l+ae
  MMETSP1174-20130828|10619_1  21 KIRVVNTDEKMHKLKRQLEEEINHNKRLQVEENMELRQLRTSVNEQKARAVTAEEALE-EIKESRAKLKAQFEKVVETSQANVGGLVAE 108
                  57899*********************99999999998877666655554444444444.445667777788888888888888877765 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.8    0.0027       1.2      22     113 ..      12     103 ..       2     109 .] 0.58

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0027
    TIGR01554  22 ekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea.fraylrrgddalaeeakalstgtdsdgG 113
                  +  +ea++ k  + ++++++ kl+ ++e++   +++++ +e+ + ++ ++  +e++a++ +ae+ +++ ++   ++l+++     +++ ++ G
  MMETSP1174-20130828|10619_1  12 KSVKEAKKLKIRVVNTDEKMHKLKRQLEEEINHNKRLQVEENMELRQLRTSVNEQKARAVTAEEaLEE-IKESRAKLKAQFEKVVETSQANVG 103
                  44556666666677788999999999998888877777777777666666666666666666665444.444444444442333333333444 PP

>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.021       9.6      34      57 ..      22      44 ..      13      47 .. 0.83
   2 ?    5.2   1.0      0.01       4.7      37      68 ..      49      80 ..      46      82 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.021
    TIGR02606 34 LRlleerEarleaLraaiqeGeqs 57
                 +R  + +E ++ +L+++++e+++ 
  MMETSP1174-20130828|10619_1 22 IRVVNTDE-KMHKLKRQLEEEINH 44
                 67777776.9**********9986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.01
    TIGR02606 37 leerEarleaLraaiqeGeqsgeagelsaddv 68
                   e+++ l++Lr +++e ++++ ++e  ++++
  MMETSP1174-20130828|10619_1 49 QVEENMELRQLRTSVNEQKARAVTAEEALEEI 80
                 3355566***************9988777776 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.2    0.0072       3.3     150     234 ..      17      97 ..       2     107 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0072
    TIGR00437 150 ideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiade 234
                   + + +i+ v+ ++++ ++ +++e+  + ++ l++   + +++l+ l++ ++e+ + +   e++l+e+ +++++ k++++++++ 
  MMETSP1174-20130828|10619_1  17 AK-KLKIRVVNTDEKMHKLKRQLEEEINHNKRLQV---EENMELRQLRTSVNEQKARAVTAEEALEEIKESRAKLKAQFEKVVET 97 
                  22.22333333333333333333333333322222...22344444444444444444444455555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       716  (0.174549); expected 82.0 (0.02)
Passed bias filter:                      283  (0.0689907); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 423.14
//
Query:       MMETSP1174-20130828|10621_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|10622_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 459.96
//
Query:       MMETSP1174-20130828|10623_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   10.7   3.6       0.71    7.5   0.5    2.0  2  TIGR00336 pyrE: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2   0.00082       3.4     114     129 ..       9      24 ..       1      31 [. 0.64
   2 ?    7.5   0.5   0.00017      0.71     112     133 ..      29      50 ..      20      51 .] 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00082
    TIGR00336 114 veDvittGtsileave 129
                  ve v t+G++++e v+
  MMETSP1174-20130828|10623_1   9 VETVKTAGNAVQETVK 24 
                  5666677777766665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00017
    TIGR00336 112 vvveDvittGtsileaveaiqe 133
                  vv e v t+G++++e ve ++ 
  MMETSP1174-20130828|10623_1  29 VVQETVKTAGNAVQETVETVKT 50 
                  6779999***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.59
# Mc/sec: 114.09
//
Query:       MMETSP1174-20130828|10625_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.3   0.0      0.037   11.2   0.0    1.0  1  TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein


Domain annotation for each model (and alignments):
>> TIGR03431  PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     9e-06     0.037     194     254 ..      11      70 ..       4      72 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9e-06
    TIGR03431 194 endealekmkekglvdkledlriiwkSplIpndPlvyrkdLpeelKaklrkavlnlkkedk 254
                   + +a++ +k +  + k+e+ + i  S+  +++  + ++dL+ + K++l+++vln++++ +
  MMETSP1174-20130828|10625_1  11 GGGVAFQMLK-RAPKGKVETREFIIPSDTTLAAQALRNNDLQMKEKEALKALVLNYEETLE 70 
                  4555555444.444555578999**********************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|10628_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.6   0.1    1.4e-05   22.5   0.1    1.0  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    4.1e-05   20.6   0.0    4.4e-05   20.4   0.0    1.0  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    0.00019   19.0   0.1    0.00021   18.9   0.1    1.0  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    0.00085   15.4   0.0    0.00086   15.4   0.0    1.0  1  TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
     0.0054   13.8   0.0     0.0055   13.8   0.0    1.0  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.7e-08   1.4e-05       2      48 ..      26      75 ..      25      78 .] 0.80

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.7e-08
    TIGR03695  2 kpvlvlLHGflgskedwqalie..el.eekfsvlalDLpgHGkskslkek 48
                 ++v++lLHG   +k++w +l +  +l ++ ++v+a+DLpg Gks++ +++
  MMETSP1174-20130828|10628_1 26 NHVVLLLHGVKYDKQTWFDLGTldALsQKGIRVVAVDLPGFGKSSHRRDR 75
                 57899************8765411452589*************9987665 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.4e-08   4.4e-05      24      68 ..      22      69 ..       2      76 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5.4e-08
    TIGR03056 24 GpaaGPvllllhGagasshsfrkl..vpllaar.frvvapdlPGhGft 68
                 G     v+lllhG+     ++ +l  + +l+++  rvva+dlPG G +
  MMETSP1174-20130828|10628_1 22 GVNHNHVVLLLHGVKYDKQTWFDLgtLDALSQKgIRVVAVDLPGFGKS 69
                 4445589***************9955667876548*********9976 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.5e-07   0.00021       5      48 ..      27      73 ..      22      78 .] 0.78

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.5e-07
    TIGR01738  5 kklvLihGWglnaevfadl..veeLsah.ftlslvDLPGyGdsaelr 48
                 + ++L+hG   +++ + dl   ++Ls++  ++ +vDLPG+G+s++ r
  MMETSP1174-20130828|10628_1 27 HVVLLLHGVKYDKQTWFDLgtLDALSQKgIRVVAVDLPGFGKSSHRR 73
                 456789**********986336789875489***********87655 PP

>> TIGR03502  lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-06   0.00086     447     489 ..      27      71 ..      13      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1e-06
    TIGR03502 447 pvvivqHGitgaKenalav..agtlaaaGvAtiaiDlPlHGeRsl 489
                   vv++ HG+  +K++ + +    +l+++G+ ++a+DlP  G+ s 
  MMETSP1174-20130828|10628_1  27 HVVLLLHGVKYDKQTWFDLgtLDALSQKGIRVVAVDLPGFGKSSH 71 
                  59************9865511679***************998775 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.7e-06    0.0055      29      75 ..      25      70 ..       4      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.7e-06
    TIGR03343 29 egeavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksd 75
                 +   v++lhg       w +    ++al + g rv+  d pgf ks 
  MMETSP1174-20130828|10628_1 25 HNHVVLLLHGVKYDKQTWFDL-GTLDALSQKGIRVVAVDLPGFGKSS 70
                 4568999***********986.689*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 219.05
//
Query:       MMETSP1174-20130828|10630_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   14.4   0.1      0.004   13.9   0.0    1.1  1  TIGR00843 benE: benzoate transporter


Domain annotation for each model (and alignments):
>> TIGR00843  benE: benzoate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.7e-07     0.004     226     265 ..      54      93 ..      46      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.7e-07
    TIGR00843 226 slalplilvslasqflpGiailklaGysapvkplivaasl 265
                  sl+lp  +v ++s+  p +ailkl   ++ ++pl   as 
  MMETSP1174-20130828|10630_1  54 SLSLPTHFVGVSSDLEPSVAILKLVDRNTCASPLACTASA 93 
                  799*******************************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 321.92
//
Query:       MMETSP1174-20130828|10634_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 284.06
//
Query:       MMETSP1174-20130828|10639_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.81
# Mc/sec: 104.29
//
Query:       MMETSP1174-20130828|10636_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 958.49
//
Query:       MMETSP1174-20130828|10640_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|10638_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|10641_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   11.9   0.4     0.0079   11.5   0.3    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
  ------ inclusion threshold ------
      0.042   11.4   3.9      0.051   11.1   2.7    1.1  1  TIGR03915 SAM_7_link_chp: probable DNA metabolism protein


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   3.8e-06    0.0079     173     237 ..      51     119 ..      49     130 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-06
    TIGR01235 173 seeevadaferakseakaafGndevyveklierpkhievqllgd....kaGnvvhlferdcsvqrrhqk 237
                  ++++  +a++r k ea+++  + +  + +l ++ +hie ++       + G  v+  erdc   +r+ k
  MMETSP1174-20130828|10641_1  51 KMDDSSQALQRMKEEAMSTREKRSEIIFNLEKEVRHIEKKIQIAkeliESGATVKSVERDCRRVKRNMK 119
                  688999******************99************877443113347***********98888877 PP

>> TIGR03915  SAM_7_link_chp: probable DNA metabolism protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   2.5e-05     0.051      34     127 ..      24     118 ..       4     121 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.5e-05
    TIGR03915  34 eeqpeLfdevvevetdeekaervakslkkklskealkqlyraflsedeereallyrllrrlfkegkkvledl.adpdvlrveelakkvsreahkm 127
                  + + +L +++++  t  +   +  ++lk   s++al+++++ ++s +e+r +++++l + +++ +kk++  +   ++ ++v+++++  +r + +m
  MMETSP1174-20130828|10641_1  24 MVTRTLNEDKHQSSTAVTILTEANEGLKMDDSSQALQRMKEEAMSTREKRSEIIFNLEKEVRHIEKKIQIAKeLIESGATVKSVERDCRRVKRNM 118
                  44568889999999999999999*****************************************9766543302455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       557  (0.135787); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|10642_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 1029.51
//
Query:       MMETSP1174-20130828|10645_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.4   0.0       0.05   10.1   0.0    1.0  1  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit


Domain annotation for each model (and alignments):
>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.2e-05      0.05     112     141 ..      13      43 ..       6      46 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.2e-05
    TIGR00132 112 DEFamGsstetSafgvtk.nPeneervpGGS 141
                  DEF +G+s+ +S+    + nP+  +r++GG 
  MMETSP1174-20130828|10645_1  13 DEFVVGGSGAESFQSTNRlNPRIAHRIAGGR 43 
                  ************8876544**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|10649_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 359.67
//
Query:       MMETSP1174-20130828|10650_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.9   0.0      0.047   11.4   0.0    1.2  1  TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family


Domain annotation for each model (and alignments):
>> TIGR02999  Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.047      11      46 ..      37      72 ..      29      77 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    TIGR02999 11 vqkgdaaaadeLfealyeeLrriarrelrreasgqt 46
                 ++ gd++a+d Lf+ l+  ++++a+   +++a + t
  MMETSP1174-20130828|10650_1 37 AKTGDNSASDPLFTSLWTSMKSTASGGHQENADRPT 72
                 789*********************999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|10648_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 806.08
//
Query:       MMETSP1174-20130828|10655_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1174-20130828|10656_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 547.75
//
Query:       MMETSP1174-20130828|10657_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|10647_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 965.60
//
Query:       MMETSP1174-20130828|10661_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1174-20130828|10663_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   12.6   0.2      0.011   12.2   0.1    1.2  1  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   2.8e-06     0.011      51     141 ..      20     110 ..       3     132 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.8e-06
    TIGR00574  51 rkapltvkevyeklkkiaeksgegsqdkkikllksLlkeasp..leakylirlieeklrigiaektildalakaallsevkkedverafsltn 141
                  + ++  +  v  + ++ a+ + e+ ++++ k+ +++ +ea    +e    +r+++++l+++ ++k+ l+al  ++  s  +++dv+ ++  ++
  MMETSP1174-20130828|10663_1  20 EAEKAEMACVEAETAEKARLEAEDAEKARVKA-NQVCVEAVDtdMESFVSLRMLFHDLSLDTVDKNTLEALRSTF-ASVFNRKDVQSIHLELA 110
                  44555555555555566666666555555555.455555544014556678************************.66699999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|10662_1  [L=1054]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:00.66
# Mc/sec: 2107.83
//
Query:       MMETSP1174-20130828|10665_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1047.91
//
Query:       MMETSP1174-20130828|10668_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-37  124.5   0.9    8.7e-37  124.0   0.6    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.5e-07   25.9   0.5    4.3e-07   25.6   0.3    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.6   4.3e-40   8.7e-37     412     514 ..      52     154 ..      47     155 .] 0.98

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 4.3e-40
    TIGR00957 412 stvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyaw 514
                   t geivnlmsvdaqr+ d  +y+ +lws  +q+ lal +l+  lg s lagv +m+l +p+ a va k ++ q   mk+kd+rik+ ne+lng+k++klyaw
  MMETSP1174-20130828|10668_1  52 RTTGEIVNLMSVDAQRLQDTMSYIAMLWSGLFQIGLALSYLFSLLGASALAGVGIMILTIPITAKVATKSRALQKVVMKVKDERIKVENEVLNGMKIIKLYAW 154
                  589**************************************************************************************************** PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.3   2.1e-10   4.3e-07     175     278 ..      51     154 ..      49     155 .] 0.93

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.1e-10
    TIGR01271 175 kistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycw 278
                  k  tg++v l+s + ++l+++++   ++w   +q+ l +  ++ ll asa+ g+g++il   + a ++ k    ++      +er+ +  e+++ ++ +k y+w
  MMETSP1174-20130828|10668_1  51 KRTTGEIVNLMSVDAQRLQDTMSYIAMLWSGLFQIGLALSYLFSLLGASALAGVGIMILTIPITAKVATKSRALQKVVMKVKDERIKVENEVLNGMKIIKLYAW 154
                  5679******************************************************99999999999988777666667789******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|10669_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 928.64
//
Query:       MMETSP1174-20130828|10670_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|10671_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.4   0.1       0.03   11.9   0.0    1.2  1  TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain


Domain annotation for each model (and alignments):
>> TIGR00254  GGDEF: diguanylate cyclase (GGDEF) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.2e-06      0.03      64     115 ..     103     154 ..      97     164 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.2e-06
    TIGR00254  64 kevaeilkesvRksDvvaRyGGeEfvvilpgtsledalsvaerlreaieske 115
                   e+  +l+++ R  Dv++R+ G+ f++ +  t   +a ++ +++ +aie+  
  MMETSP1174-20130828|10671_1 103 VEAKGQLANNDRPGDVAGRVKGQAFAIDVFTTRVGSATNKGKSVDKAIEAAD 154
                  566779999************************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|10672_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|10675_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1174-20130828|10676_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 851.93
//
Query:       MMETSP1174-20130828|10674_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   49.7   9.8    3.9e-11   41.2   0.1    3.2  3  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.3     0.067   2.8e+02     106     180 ..     103     185 ..      21     251 .. 0.66
   2 !   41.2   0.1   9.5e-15   3.9e-11      21      96 ..     274     343 ..     270     345 .. 0.93
   3 !   12.1   0.0   6.4e-06     0.026      44      95 ..     407     459 ..     400     462 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.067
    TIGR03354 106 gaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaa........sldPlkaldqepasaadlddga 180
                  +aa   d +  +p ++  a+ +++ +++ eed+ d  +  ++    +++ +++          +P++a + e +  +  d+ +
  MMETSP1174-20130828|10674_1 103 SAAGNDDAVEMRPTSIRDAEPKEIHRNRGEEDDHDDELDSNSDNMDDDDNEDVmyssranpLTEPIEAEEYEDDDDESRDAAI 185
                  33344444444455555555666665555444444443444444444444445566644444444444333333333333322 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 9.5e-15
    TIGR03354  21 feeeggtiGrsedcdWvlpDperlvssrhaeiekrdgaylltdlStnGvflnnsgsplrrgepvrLeqgdelrlGd 96 
                  +  +++tiGrs   + +++D    vs+rh  ++ rd  +lltd+StnG+++n  g++++   pv L++g++++lG+
  MMETSP1174-20130828|10674_1 274 LPGTDITIGRSG--NVSVDDVR--VSRRHVLLQLRDTGWLLTDTSTNGTVVN--GKRVKTRVPVTLSHGSVITLGN 343
                  566789*****9..77899999..****************************..9*******************96 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 6.4e-06
    TIGR03354  44 lvssrhaeiekr..dgaylltdl.StnGvflnnsgsplrrgepvrLeqgdelrlG 95 
                   vs+rh+e++++    ++ l+dl S nGvf+n    +l+r+  v+    +e+ +G
  MMETSP1174-20130828|10674_1 407 QVSRRHCELRFNptSMTFHLRDLtSMNGVFVN--RVKLQRDVFVPVAVNSEFIFG 459
                  59********9722568*****6378******..9******99998877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1405.97
//
Query:       MMETSP1174-20130828|10678_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 862.14
//
Query:       MMETSP1174-20130828|10677_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 761.24
//
Query:       MMETSP1174-20130828|10682_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1174-20130828|10684_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 189.94
//
Query:       MMETSP1174-20130828|10680_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 570.08
//
Query:       MMETSP1174-20130828|10679_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1172.55
//
Query:       MMETSP1174-20130828|10681_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 543.48
//
Query:       MMETSP1174-20130828|10687_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   18.0  27.0     0.0001   18.0  18.7    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0071   13.3   0.2      0.017   12.1   0.1    1.7  2  TIGR03723 bact_gcp: putative glycoprotease GCP
  ------ inclusion threshold ------
      0.022   11.8   2.9      0.022   11.7   0.9    1.8  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
      0.084    8.3  46.1      0.052    9.0  17.0    2.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0  18.7     1e-07    0.0001     680     955 ..      26     301 ..      14     309 .. 0.74
   2 !    7.2  15.9   0.00018      0.18     683     880 ..     185     391 ..     182     399 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1e-07
    TIGR02168 680 eieeleeeieeleekiaelekelkelekeleeleeeleklrk.eleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyelel 955
                  +++  +++iee++++i+e  +++ +++k+ ++ + ++ +l++ ++++  +  +   +   +++k v +le+rl++   +l++ e+e  + ++ +++++ + +++++++++lea +++ +e++  l e+   l++e++   +++ a +e + e+  + ++++e+  + +eeq e  ++++++++++ ++ +e+ ++++ ++++++++   ++++l   +e+ +  +++ +++++k+++ e+   +lr + +q+ l+ +  +v+ +++++ ++e  +l  
  MMETSP1174-20130828|10687_1  26 KMAIEKKRIEEIQDSINEVGRQVGKYQKDIKANAVDVINLHRdQKTNVADGWNPIIQGEVSHQKLVTNLESRLNKVLVRLNQTENENLKIKKSIDQLRRNRSACDANRKKLEAGLRAKQERVGRLLESSGVLQEEHNeIIRKQEAYVEDNKEEALECVEECERLGKYIEEQNEIVSKNVKEAAHSAARGNENTDNFRGDFDDAEENE--MRRKLTLTNEQIARNRNSSEDTQHKIDAFEDGFAKLRVAAKQAALDASVNRVMTSRNLDDIEEIKKLFI 301
                  344445677777777777777777777766555544444333033334455555555556666777788888888888888888888888888888999999999999999999999999999999999999999984444445555666677777777888888888888888888888888888888888888888888877766..788888889999999999999999999999999999999999999999988888888888877666655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00018
    TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklr.....keleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt....elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleel 880
                  e+e+  + +ee+ +  +k++ke++++  + +e++++ r     +e++e++rkl+ ++++++r ++++e  +++++  e+  ++l+   ++++ + + ++  +++  ++iee ++ + + ++e+  + e +   ++  +    e +++ +e +++ +++e+e a+ +++++e +++i++ +eei++++ +i++ ++ ++ l +++++l
  MMETSP1174-20130828|10687_1 185 ECERLGKYIEEQNEIVSKNVKEAAHSAARGNENTDNFRgdfddAEENEMRRKLTLTNEQIARNRNSSEDTQHKIDAFEDGFAKLRVAAKQAALDASVNRVMTSRNLDDIEEIKKLFIENQDEVFFSGEVHPGGHQGDRrderESRDDENEFKSHKQKMEDEEAERAENIREFHQKIARSKEEISANTTSISDSQRVIDMLAKKVQRL 391
                  55556666677777777777777777776666666654222225677779********************************999999999999999999999999999999999888888876666554433333331001333444444556667777777778899999**********************9999999998876 PP

>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   1.6e-05     0.017     216     273 ..     353     410 ..     313     422 .. 0.87
   2 ?   -2.3   0.0       0.4   4.1e+02     258     292 ..     418     452 ..     412     458 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
    TIGR03723 216 vlnlveklkeeeeelekadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNs 273
                  +++  +k ++++ee++++  + s  + v+d+l++k++r + k +++++  +GG aaN+
  MMETSP1174-20130828|10687_1 353 IREFHQKIARSKEEISANTTSISDSQRVIDMLAKKVQRLFYKIQCDQVGGGGGNAANK 410
                  556677788889999999999999*********************************7 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.4
    TIGR03723 258 tklktlvvaGGvaaNsalrekleelaekkglevll 292
                  ++ ++l++aGG + N+    k+ + +ek+ +e+++
  MMETSP1174-20130828|10687_1 418 QTDSQLLLAGGGGVNESNILKFMQIIEKRAVELIA 452
                  55678999999999988777788888888887765 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   2.2e-05     0.022     167     280 ..      11     121 ..       9     125 .. 0.92
   2 ?   -3.8   0.0       1.2   1.2e+03     185     241 ..     362     376 ..     348     394 .. 0.35

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.2e-05
    TIGR00996 167 pqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleq 280
                  ++l++ll + + +t++++   + i+e+ d+ n v + +++ ++++++   n+ ++i   +d++++++d +  + +   + ++l+++ ++ L+++l +L+++  +  + +++++q
  MMETSP1174-20130828|10687_1  11 ESLSDLLIQGDIFTRKMAIEKKRIEEIQDSINEVGRQVGKYQKDIKA---NAVDVINLHRDQKTNVADGWNPIIQGEVSHQKLVTNLESRLNKVLVRLNQTENENLKIKKSIDQ 121
                  67999****************************************96...7778889999***************************************998887777777776 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.2
    TIGR00996 185 erdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsa 241
                  ++ e i++++                                          + +s+
  MMETSP1174-20130828|10687_1 362 RSKEEISANT------------------------------------------TSISD 376
                  2222222222..........................................22222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  17.0   5.1e-05     0.052     266     472 ..      89     300 ..      81     308 .. 0.73
   2 ?    5.6   5.2   0.00054      0.55     658     736 ..     316     391 ..     305     400 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5.1e-05
    TIGR02169 266 keleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieee.kkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklk.....eelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekel 472
                  k + ++e++l+++  ++++ +e+e l++k+ + +l+ +++ ++++ ++ e  l+  +er+ ++ +    l+ee++e+ r++e++ + ++e+  e ++e +   + ++++ e v+k+ +e+ +  +  +e+ ++ +      e ne++r+l    e+  r ++  ++ ++++ + e+  a+l  +++++a   + ++   +++ +d e+++k  
  MMETSP1174-20130828|10687_1  89 KLVTNLESRLNKVLVRLNQ-TENENLKIKKSIDQLRRNRSACDANRKKLEAGLRAKQERVGRLLESSGVLQEEHNEIIRKQEAYvEDNKEEALECVEECERLGKYIEEQNEIVSKNVKEAAHSAARGNENTDNFRgdfddAEENEMRRKLTLTNEQIARNRNSSEDTQHKIDAFEDGFAKLRVAAKQAALDASVNRVMTSRNLDDIEEIKKLF 300
                  5677899999999999999.9***************************************999999999999999998888876234455555556655555555555555556666666555555555555554111113556666666667788888888888999999999999998888888877777777777777777777666655 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00054
    TIGR02169 658 GGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeekl 736
                  GG++  r+   ++++ ++ +++ + +++++e+e+++ ++++r+ ++++   ++++s+ + +i++ ++ +++l+++ ++l
  MMETSP1174-20130828|10687_1 316 GGHQGDRR---DERESRDDENEFKSHKQKMEDEEAERAENIREFHQKIARSKEEISANTTSISDSQRVIDMLAKKVQRL 391
                  66654433...66666666677778888888888888888888888888888888888888888888888887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.74
# Mc/sec: 993.49
//
Query:       MMETSP1174-20130828|10686_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-39  131.5   0.0    1.4e-37  126.7   0.0    2.1  2  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein
     0.0029   13.6   0.0     0.0044   13.0   0.0    1.2  1  TIGR00143 hypF: carbamoyltransferase HypF


Domain annotation for each model (and alignments):
>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0     7e-41   1.4e-37       6     165 ..      15     181 ..      12     191 .. 0.89
   2 !    2.6   0.0    0.0072        15     168     197 ..     216     248 ..     212     253 .. 0.74

  Alignments for each domain:
  == domain 1    score: 126.7 bits;  conditional E-value: 7e-41
    TIGR00057   6 psqrviekavkllkkgeivvyPTdtvYglgadaldeeAvkrlleikkrpsnkplivlvsdlseieklaevkeka.......kkLikkflpGpltlvlkkkkeiprlvskkrktvaiRvPdeeialelleelgkPivatSanlsgkesateveeivkeldkkvdliid 165
                  +++++i++a++ l++g++v++PT+tvYglga+al+e Av+ ++++k+rp   pliv+v++l+   + +e  +++         L ++f+pG ltlv +  +++p  ++   + v++RvP +++al+ll++ + P++a+San  g+ s+t++++++ +l++k  ++++
  MMETSP1174-20130828|10686_1  15 ANEEGIHEAAERLRNGGLVAFPTETVYGLGANALNERAVRDIFQAKGRPLSDPLIVHVASLEDAISCVELGDEHgitrcafVALARAFWPGGLTLVAPMRTHLPLCLTAGTGSVGVRVPCNPVALKLLRAARVPVAAPSANRFGHVSPTTAAHVMVDLGDKQIAVLE 181
                  56789*******************************************************9987777776555433333335799************************9***********************************************9876555555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0072
    TIGR00057 168 evkkgeestvvdlteke..pkvlReGkvs.eei 197
                  ++++g estv +++ ++   ++ R+G+ s +e+
  MMETSP1174-20130828|10686_1 216 PCLHGIESTVCKVDAATrqLIIFRRGVTSeREL 248
                  58999*****7766655338999***9985555 PP

>> TIGR00143  hypF: carbamoyltransferase HypF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.1e-06    0.0044     190     325 ..      16     159 ..       7     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-06
    TIGR00143 190 keealkeavkalkkGkiiAikGiGGfhlaCdaredevverLRkrknRP.akPlAvmlkdlesieevaelnele...keaLlsaaa...P..ivllkkkkdlklveniapeldeiGvmlpytpLhhlLlkekekalvmtsanlsge 325
                  +ee+++ea++ l +G ++A      + l  +a ++ +v+ + + k+RP + Pl v +  le + +  el ++    + a ++ a+   P  + l+   +  +l   ++ ++ ++Gv +p +p+   Ll+  + ++ + san+ g+
  MMETSP1174-20130828|10686_1  16 NEEGIHEAAERLRNGGLVAFPTETVYGLGANALNERAVRDIFQAKGRPlSDPLIVHVASLEDAISCVELGDEHgitRCAFVALARafwPggLTLVAPMRT-HLPLCLTAGTGSVGVRVPCNPVALKLLRAARVPVAAPSANRFGH 159
                  689*******************99************************447************9999998865222344555555233433445555444.444457899999****************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1464.16
//
Query:       MMETSP1174-20130828|10689_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 549.44
//
Query:       MMETSP1174-20130828|10688_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|10693_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 711.94
//
Query:       MMETSP1174-20130828|10696_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|10694_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1220  (0.297416); expected 82.0 (0.02)
Passed bias filter:                      246  (0.0599707); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.91u 0.23s 00:00:01.14 Elapsed: 00:00:01.21
# Mc/sec: 470.14
//
Query:       MMETSP1174-20130828|10706_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|10704_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1013.02
//
Query:       MMETSP1174-20130828|10709_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1174-20130828|10707_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   10.9   0.0      0.071    9.9   0.0    1.4  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.7e-05     0.071      97     125 ..      90     118 ..      70     126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.7e-05
    TIGR03056  97 daviGhsaGaaialrlaldlpvrPravvg 125
                  + v+Ghs+Ga  a+rla+ +p+   ++v+
  MMETSP1174-20130828|10707_1  90 TIVVGHSSGAVAAMRLAETTPLYGIVLVS 118
                  569******************97666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 1402.02
//
Query:       MMETSP1174-20130828|10713_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|10717_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.69
# Mc/sec: 141.55
//
Query:       MMETSP1174-20130828|10715_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1184.43
//
Query:       MMETSP1174-20130828|10716_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|10718_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.59
# Mc/sec: 968.67
//
Query:       MMETSP1174-20130828|10719_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 571.00
//
Query:       MMETSP1174-20130828|10721_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 159.99
//
Query:       MMETSP1174-20130828|10722_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1174-20130828|10725_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 301.21
//
Query:       MMETSP1174-20130828|10732_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   11.0   6.5        3.3    6.0   0.0    3.7  4  TIGR04079 phero_cyc_pep: KxxxW-cyclized secreted peptide


Domain annotation for each model (and alignments):
>> TIGR04079  phero_cyc_pep: KxxxW-cyclized secreted peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.018        73      14      18 ..       9      13 ..       8      17 .. 0.89
   2 ?   -3.8   0.1      0.98     4e+03      14      18 ..      19      23 ..      19      23 .. 0.82
   3 ?    5.3   0.1    0.0013       5.4      14      22 ..      29      37 ..      28      38 .. 0.89
   4 ?    6.0   0.0   0.00082       3.3      14      22 ..      39      47 ..      38      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.018
    TIGR04079 14 ssiAK 18
                 ss+AK
  MMETSP1174-20130828|10732_1  9 SSMAK 13
                 9***9 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.98
    TIGR04079 14 ssiAK 18
                 ss AK
  MMETSP1174-20130828|10732_1 19 SSTAK 23
                 78898 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0013
    TIGR04079 14 ssiAKGDGW 22
                 ss+AK D W
  MMETSP1174-20130828|10732_1 29 SSMAKHDRW 37
                 9****9988 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.00082
    TIGR04079 14 ssiAKGDGW 22
                 ss+AK D W
  MMETSP1174-20130828|10732_1 39 SSMAKHDNW 47
                 9******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 238.15
//
Query:       MMETSP1174-20130828|10734_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 184.09
//
Query:       MMETSP1174-20130828|10738_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 546.81
//
Query:       MMETSP1174-20130828|10741_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.74
# Mc/sec: 693.83
//
Query:       MMETSP1174-20130828|10745_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1170.07
//
Query:       MMETSP1174-20130828|10744_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1661.71
//
Query:       MMETSP1174-20130828|10746_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.0   0.1      0.045   11.3   0.0    1.3  1  TIGR02453 TIGR02453: TIGR02453 family protein


Domain annotation for each model (and alignments):
>> TIGR02453  TIGR02453: TIGR02453 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.045     118     168 ..       9      58 ..       6      63 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR02453 118 peaevlaavReaiaenpdewraivealkklkgfkldgekLkrapkgfdkdk 168
                  ++ ++l++vR +++++pd  ++  +a +  ++fk+ +    +apkgf+k  
  MMETSP1174-20130828|10746_1   9 LDFALLNKVRDELKDKPDDKKSKSSASSTAQKFKIRSS-TAKAPKGFKKGA 58 
                  56689*****************************9987.789*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1050.41
//
Query:       MMETSP1174-20130828|10748_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.8e-224  742.2   6.6   9.4e-224  742.0   4.6    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   2.1e-171  569.2   2.6   2.6e-171  568.9   1.8    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    3.3e-13   47.2   0.2    1.2e-12   45.4   0.0    1.8  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    7.8e-11   39.7   0.1    1.4e-09   35.6   0.0    2.5  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    3.2e-05   20.5   0.0    7.5e-05   19.3   0.0    1.5  2  TIGR01312 XylB: xylulokinase
    0.00015   18.8   0.7      0.043   10.7   0.0    3.1  3  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  742.0   4.6  1.4e-226  9.4e-224       3     590 ..       9     609 ..       7     614 .. 0.94

  Alignments for each domain:
  == domain 1    score: 742.0 bits;  conditional E-value: 1.4e-226
    TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.....evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge.....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag..dkleeeekekiekaveelkealkeedveek..ikakteelekalekl 590
                  +GidLGtt s+v v++ ++ ++ian +G+rttPs+vaf+++ erl+G++ak+q+ +n+ nt++ +krliGrk++   v++++k+ p++v +        ev+++ e+k+++pee+s+++L k+k+ aeay+G++v++av+tvPayfnd+qrqatkdaG+iaGl+vlriinePtaaa+ayGldk+ +++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd++++d+++ efk++   d++ ++ al+rl+ a e+ak  Ls+++++++++  +       ++++ ++tra+fe++ +d +++++epv+k+l+d+k s++ ++ev+lvGGstriP+vq ++ +++g kep ks+nPde+va Ga +q+++l+g+     ++d+lLldvtPLsLg+et Ggv+t+li+rntt+P+kksq+fst +dnqp v i+v+ Ger++++d + lg+f+L+gipp+PrG+pqievtfdidanGil+v+a +k+tgkeq+itit+ ++ ls +eiermv eae++++ed+ ++ ++ea+n+++++ y++++t+ +++   kl++ +ke+i+ ++ee  + l+ ++++ek   +ak++ele  ++ +
  MMETSP1174-20130828|10748_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTddAVKSDMKHWPFTVKSGPAgkpiiEVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLLEFKRKFKKDMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSLFE----GIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAYGATVQAAILSGQdqsekLQDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAIEKSTGKEQKITITNdKGRLSADEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTIGDEKlaSKLSDGDKESITGKIEETIQWLDANQTAEKeeYEAKQKELEAIVNPI 609
                  8**************************************99.******************************9855799**********9876542323455556689**********************************************************************************************************************************************************************9999887653....47899************************************************************98*************************977788899******************************************************************************************************************972578********************************************9876337899************9999988877766334777777777766665 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.9   1.8  3.9e-174  2.6e-171       2     565 ..       9     591 ..       8     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 568.9 bits;  conditional E-value: 3.9e-174
    TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgem....vrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke...dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadk..dLlseeelkaikaaleklekaleeddaea 565
                  vGiDlGtt+s v + +++++e++ +++g+ + ps v ++e  +  +G++ak+++a + +nt+  +kRl+Gr  +d  vk+ +++ p+++++++ +     v+++ ++++ +P evs+ +L k+k+ ae  +gk++k+av+tvPAYF+d qrqatkdA+ +aglnvlR++nePtaAA+AYGldk   e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD+++++++l    +k + + + ++   + l +a ++ak++L++++++++e+    eg d++ +++r+++e++  ++ +k +e+v+++lrd++ +++ ++evvlvGGstr+p+v+ +++++F+ kep ++++Pde vA GA++qa +L++++++e   dllLlDv+PLsLGlet GG++  +i Rntt+P++k+q F ty D+q ++ i+v  GeR + +dc  L++F+L gippm+ G+ +i+vtf++Da+G+l+v+a ek+tg+e+ki++ +  g Ls +eie+m+ ++ ++ +eD ++R++ e+k   e+   ++++++ ++k    ls  ++++i+ ++e+  + l+ +++++
  MMETSP1174-20130828|10748_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTDdaVKSDMKHWPFTVKSGPAGKpiieVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKkGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLlefkRKFKKDMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSlfEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAYGATVQAAILSGQDQSEklqDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAIEKSTGKEQKITITNDKGrLSADEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTIGDEKlaSKLSDGDKESITGKIEETIQWLDANQTAE 591
                  8**************************************99.99***************************8765448999999*****9988776111145555666889***********************************************************************977999**********************************************999665444444466677777888888999******9999988886446******************************************************************6489***********************88776546689****************************************************************************************************************987644************************************9999999976542245777778877777776655554444332 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.28   1.9e+02       4      20 ..       8      24 ..       6      87 .. 0.59
   2 !   45.4   0.0   1.7e-15   1.2e-12     100     304 ..     144     356 ..     120     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.28
    TIGR00904  4 dlgidlGtantlvyvkg 20
                  +gidlGt+   v v +
  MMETSP1174-20130828|10748_1  8 SVGIDLGTTYSCVGVWQ 24
                 68999999987764433 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 1.7e-15
    TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveep.tgsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyi....rrky.nlliGerta.ekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsket 304
                  + +++vP+   + +r+a k++   aG +   +i+ep aaai  +l  +   +  ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ ++++     +rk+ + + G++ a  ++++    a+ +  + +++  ++   l +G+  + +++  +  +   +  ++ +e v+++l +++       v + +vl GG + +  ++ +ls+  
  MMETSP1174-20130828|10748_1 144 NAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGDeKNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVDHFllefKRKFkKDMKGNQRAlRRLRTACERAKRTL-SASTQAHLEIDSLFEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKN--AV-HEVVLVGGSTRIPKVQGMLSDFF 356
                  379******************************************998651566899************994599776662233689******9999874333355551569999988356888887777764.45555566667899*********************************99876544..34.56999999999999999888754 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     2e-12   1.4e-09      43     143 ..     124     230 ..     120     269 .. 0.88
   2 ?    0.8   0.0     0.086        59     188     218 ..     326     356 ..     291     370 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2e-12
    TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql......kngavvdvGGGttGisilkkGkviysadeatGGthl 143
                  + ++ ++k+ +e  +G ++++a ++vP   ++++ +++ +    aGl+vl++++ePtaaa +  l      kn  + d+GGGt  +s+l   + i+    ++G thl
  MMETSP1174-20130828|10748_1 124 SMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLdkkgdeKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 230
                  5677899****************************************************999888333322356789**************999**99999999997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.086
    TIGR02529 188 khiekqkvkdlylvGGassfsefedvfekel 218
                  +   k+ v+++ lvGG++ +++++ +++  +
  MMETSP1174-20130828|10748_1 326 SKCSKNAVHEVVLVGGSTRIPKVQGMLSDFF 356
                  45678899***********999998887665 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.81   5.5e+02       1      26 [.       9      35 ..       9      41 .. 0.69
   2 !   19.3   0.0   1.1e-07   7.5e-05     379     449 ..     319     392 ..     282     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.81
    TIGR01312  1 lGiDlgTs.svKallvdekgeviasgs 26
                 +GiDlgT+ s+  +  +++ e+ia+ +
  MMETSP1174-20130828|10748_1  9 VGIDLGTTySCVGVWQNDRVEIIANDQ 35
                 7*****982444455558888888766 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.1e-07
    TIGR01312 379 sldilkelk..glkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialgekdlveecs 449
                    ++l++ k     ++e++l+GG ++ + ++ +l d +g +  +++   +e++a+Ga ++Aai +g+ d+ e+++
  MMETSP1174-20130828|10748_1 319 VEKVLRDSKcsKNAVHEVVLVGGSTRIPKVQGMLSDFFGGKEPCKSinPDEAVAYGATVQAAILSGQ-DQSEKLQ 392
                  44555554411346899*********************97655554449**************9985.4555554 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   6.3e-05     0.043     165     214 ..     163     213 ..     141     231 .. 0.84
   2 !    4.9   0.0    0.0037       2.5     279     338 ..     298     356 ..     269     369 .. 0.76
   3 ?   -1.9   0.1      0.44     3e+02      81     115 ..     497     532 ..     481     539 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.3e-05
    TIGR01174 165 kaveraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavyt 214
                  +a + agl+v +i+ ++ A+a+a  L++   e  v++ d+Gggt d+++ t
  MMETSP1174-20130828|10748_1 163 DAGAIAGLNVLRIINEPTAAAIAYgLDKKGDEKNVLIFDLGGGTFDVSLLT 213
                  5556699***************966999888889************99876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0037
    TIGR01174 279 elskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvf 338
                  ++++++  ++     +  +e v+ k l++s+ +++  + +vl GG +++  ++ + ++ f
  MMETSP1174-20130828|10748_1 298 TITRARFEDMNMDYFRKCMEPVE-KVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFF 356
                  55555555555555566677786.999999996666666***********9999988877 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.44
    TIGR01174  81 ksqnskgvvaikdk.evtqediervleaakavalpe 115
                  ++ +++ +  ++dk  + +++ier++++a+  + ++
  MMETSP1174-20130828|10748_1 497 STGKEQKITITNDKgRLSADEIERMVDEAERYKAED 532
                  444556666666667999999***999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 1359.08
//
Query:       MMETSP1174-20130828|10751_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    8.9   6.4       0.21    8.7   4.4    1.1  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.4   5.2e-05      0.21     148     234 ..       4      89 ..       1     102 [. 0.47

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 5.2e-05
    TIGR00570 148 eealelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldvaeliae.hkeksvklekeveklksekkatfstgikvgaqns 234
                  ee+++ e+++ e++++++++ e++++ +  ++  +++d   + d   +  ++   +e s+  +++++  ++ +++ ++ g+  ++++ 
  MMETSP1174-20130828|10751_1   4 EERQREERHR-EERQREERQREQMRRRMDSHTN-QFIDAGLYIDETGEACVDTsSEEGSTTHREQSKFSHQRDQDHLRRGVERSYSEK 89 
                  3333333322.2333333444444444433333.344444444444444444303444455555555555556668888877666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1174-20130828|10755_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|10757_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-07   25.7   0.0    6.3e-07   25.7   0.0    1.0  1  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.5e-10   6.3e-07     229     259 ..      42      73 ..      27      75 .] 0.84

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.5e-10
    TIGR00198 229 irv.tfarmgmndeetvaliagghtlgkchga 259
                  +r   f rmg+nd+e val+ ggh  g+ch +
  MMETSP1174-20130828|10757_1  42 VRNeVFYRMGFNDQEIVALLCGGHVYGRCHPN 73 
                  5532799***********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|10756_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 761.14
//
Query:       MMETSP1174-20130828|10763_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1068.48
//
Query:       MMETSP1174-20130828|10759_1  [L=1105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.65
# Mc/sec: 2243.81
//
Query:       MMETSP1174-20130828|10762_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.48
# Mc/sec: 1432.63
//
Query:       MMETSP1174-20130828|10764_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 1236.79
//
Query:       MMETSP1174-20130828|10765_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 771.63
//
Query:       MMETSP1174-20130828|10766_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-27   93.1   0.0    4.5e-20   69.8   0.0    2.5  2  TIGR00261 traB: TraB family protein


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     1e-08   4.3e-05       5      43 ..      36      74 ..      33      76 .. 0.95
   2 !   69.8   0.0   1.1e-23   4.5e-20      83     217 ..     131     281 ..     123     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1e-08
    TIGR00261  5 diyivGtahvskksveevaeviesvkPdaiavelderry 43
                 ++ ++Gtah+s  s   v + i s++P  + veld +r+
  MMETSP1174-20130828|10766_1 36 SVALIGTAHISEVSAALVRRTIRSLHPSVVMVELDAKRF 74
                 6789**********************************9 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 1.1e-23
    TIGR00261  83 eetGikPGsemkkaiekakkaglpvllidrdieltlkrlwdkl......tfvekiki.ifellss....teakee.....levdelleedvleklvkelkkisPkvkkvliderdefiakklleaekrknsivavvGaGhveGivralkkl 217
                  ++ G   G em +a+e a+  g+ +ll drd+++tl+rl   +      +  ek+   + +l+      +   e+     l  +el+++  + +l+  l+  +P ++  li erd f+a+kll a   + s vavvG  h++Gi++ l+++
  MMETSP1174-20130828|10766_1 131 DSVGFESGGEMVAAVEGANSEGAALLLGDRDVDVTLRRLGGAIlktdifAASEKLDAeLEKLFPNasfgDMGSEDpqairLVTEELKNRATIRRLMGSLQSAAPAIHAALISERDSFMANKLLTAVPPQASAVAVVGMAHMDGIEKSLLEV 281
                  68999*********************************854332211114456664322233322111122222221111456888888999********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 994.99
//
Query:       MMETSP1174-20130828|10768_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|10771_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.9   0.5      0.033   10.7   0.3    1.0  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   8.1e-06     0.033     140     175 ..       9      44 ..       3      50 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.1e-06
    TIGR02231 140 eklleedreveakirelekklselenelrallteke 175
                  ++++e++r +++k +e e+++  le++l+a++++k+
  MMETSP1174-20130828|10771_1   9 NTMMEQLRTAKRKLAEAERRIEGLEEKLQAKQKNKS 44 
                  78999*************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|10767_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-12   43.3   0.0    4.6e-07   26.9   0.0    3.1  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.1e-10   4.6e-07      28     103 ..     176     256 ..     150     286 .. 0.82
   2 !    6.3   0.0    0.0002      0.81     251     318 ..     379     451 ..     360     522 .. 0.64
   3 !    6.4   0.0   0.00018      0.74     399     453 ..     578     643 ..     568     654 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.1e-10
    TIGR03417  28 kaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydna....a..efasdiptyahylraaGyktalsGkmhf 103
                    P+++++a+ ++ +dn y+   lc+P+ra+l++G lP ++g+  +     a   ++ d +    yl+++Gyk+ + Gk h+
  MMETSP1174-20130828|10767_1 176 ASPTIDNMAKSGIILDNYYS-QHLCTPSRAALMTGVLPYHMGMQHEVilpsApwGVPLDHMMLPEYLSQQGYKSHIVGKWHL 256
                  479************99775.68****************99987764111131234567788999**************996 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0002
    TIGR03417 251 arrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.....kmsffegsarvPllvaa 318
                   r+ +   +   d+ i +++++l++  l  +t+++++sd G      G        k   feg+ rv  ++++
  MMETSP1174-20130828|10767_1 379 QRKKFSRMLMATDHSIDQIVTSLTSNDLISKTVIIYSSDNGACHLSGGYNSplrggKHYLFEGGLRVHGFMYS 451
                  44444445567899**************************976443333211112255566777776554444 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00018
    TIGR03417 399 ceadPe.....qlydleadPkelenlae.epehaetlealraeaaa.....rwdlealdaevresq 453
                  ce+ P+      l+++++dP e++nlae +p++  +l+al +  a+      w+ e+++a +  sq
  MMETSP1174-20130828|10767_1 578 CENAPNegintFLFNISSDPFEMNNLAEvHPDMVVELSALIEALASemvdpVWQPEEMTAVIAWSQ 643
                  5555542222269**************845766666666544332200111566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 1569.73
//
Query:       MMETSP1174-20130828|10777_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|10779_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|10782_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    7.0   3.6        0.3    7.6   1.5    1.4  2  TIGR00913 2A0310: amino acid permease (yeast)


Domain annotation for each model (and alignments):
>> TIGR00913  2A0310: amino acid permease (yeast)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.5   7.3e-05       0.3      18      44 ..      11      37 ..       8      45 .. 0.89
   2 ?    0.7   0.4    0.0088        36      13      25 ..      36      48 ..      33      52 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 7.3e-05
    TIGR00913 18 igtGllvgsgkalstaGPaglligyll 44
                 i  G++vg +   + +GP+g+ +g+++
  MMETSP1174-20130828|10782_1 11 IELGMFVGVSDGSELGGPVGTELGFAV 37
                 788**********************86 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.0088
    TIGR00913 13 alGgaigtGllvg 25
                 a+G+a+gtG+ +g
  MMETSP1174-20130828|10782_1 36 AVGTALGTGVGIG 48
                 8999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|10776_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.62
# Mc/sec: 1507.23
//
Query:       MMETSP1174-20130828|10783_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1043.34
//
Query:       MMETSP1174-20130828|10787_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|10791_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 809.77
//
Query:       MMETSP1174-20130828|10793_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 163.85
//
Query:       MMETSP1174-20130828|10794_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 427.83
//
Query:       MMETSP1174-20130828|10792_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 919.45
//
Query:       MMETSP1174-20130828|10796_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|10799_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 450.48
//
Query:       MMETSP1174-20130828|10805_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 570.66
//
Query:       MMETSP1174-20130828|10806_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|10807_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|10802_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-75  252.4   0.0    2.1e-36  123.7   0.0    3.1  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    2.8e-10   37.6   0.0    6.6e-05   19.9   0.0    2.4  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      1e-09   36.0   0.0    6.1e-06   23.6   0.0    2.1  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    2.4e-06   25.2   0.1    0.00015   19.4   0.0    2.6  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0026   15.4   0.0        0.5    8.0   0.0    3.1  3  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0068   13.6   0.1      0.038   11.2   0.0    2.0  2  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.025   11.2   0.0    1.4  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
       0.02   11.7   0.0       0.03   11.1   0.0    1.1  1  TIGR02836 spore_IV_A: stage IV sporulation protein A
      0.022   11.5   0.0       0.16    8.7   0.0    1.9  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.029   11.7   0.1      0.061   10.7   0.0    1.5  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.032   11.1   0.0      0.075    9.9   0.0    1.5  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00013     0.048       1      27 [.      87     113 ..      87     121 .. 0.92
   2 !  123.7   0.0   5.7e-39   2.1e-36      28     182 ..     177     346 ..     167     351 .. 0.87
   3 !  114.5   0.0   3.6e-36   1.3e-33     183     360 ..     368     554 ..     362     555 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR03597   1 kCiGCGaalqtedkkklgYvpksalek 27 
                  +C GCG  l ++ ++++g+vp+++lek
  MMETSP1174-20130828|10802_1  87 ECAGCGIRLHSSSPNQPGFVPSHVLEK 113
                  5********************998865 PP

  == domain 2    score: 123.7 bits;  conditional E-value: 5.7e-39
    TIGR03597  28 eevlCqRCFrlkhYneled.........velkdedflnllnslsekkalvvavvDifdlegslikelkrfvkenkvllvvNKidllpksvklekikewlkkeake....eglkpvdillvsakkkkglkellelikkare..kkdvyvvGvtNVGKSsliNkllklnkgk 182
                   +v+CqRC+rl++Y+++ d           l  ++f++l+  l+ k+ ++v+++D+fd++gs+++ l+ ++++n++ + vNK+dllp  +  +++++w+ +e +     e ++p+++ lvsak++ g+ +l++++ + ++  k d+yvvG++NVGKSs++N+l++++ g+
  MMETSP1174-20130828|10802_1 177 SRVICQRCHRLRNYGNVADdlrpgwsksEALMPSHFEELIGALKGKRCVLVTMIDVFDFHGSVLPRLASLAGKNPLFVAVNKVDLLPSDYSPTRVRDWVVEECRYwaslEQIRPNNVHLVSAKTGSGIGKLMDAVRDLAKrrKCDIYVVGAANVGKSSFVNRLCNMEGGH 346
                  579************99763333332213566789****************************************************************99965422227789**********************99877557799******************998776 PP

  == domain 3    score: 114.5 bits;  conditional E-value: 3.6e-36
    TIGR03597 183 kkvittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdlkkivpkkeikpktyqlkeeqtlflgglarldylkgektsftiyvskelkiHrtklekadelyekklgellspP....kkkekaelkelvkkeltik.....e.kedivisGlgwitvk.keeakvkvtapkevevslrkal 360
                  k+ ittS  pgTTl + +i + ++ +l+D+pGii ++q+++ ls  +l+++vp+k++++ t +l+e++++ lg lar++ l+g+   ft+yv++ +k+H t++e  +++ ek++g ll+pP    +++e    ++l +  l+++     e  +div+sGlgw+ v+ ++ ++v v +p++v v  r +l
  MMETSP1174-20130828|10802_1 368 KQGITTSALPGTTLSFLKIAVGEGVSLIDSPGIILRHQLTSRLSISELSSVVPSKNVEHVTLRLREGKAVCLGALARIELLEGKPFFFTFYVAQGVKLHSTSSEGIEAFVEKHVGGLLTPPhdplRLEEV--APRLETFDLEVQgagwtEaGSDIVLSGLGWVAVTgSGSCRVRVSVPEGVMVLQRPPL 554
                  456**********************************************************************************************************************654333333..333333333332222225589*************8899************9988665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.8e-07   6.6e-05     285     350 ..     248     319 ..     222     323 .. 0.78
   2 !   16.1   0.1   2.5e-06   0.00093     176     198 ..     320     342 ..     314     345 .. 0.72
   3 ?   -3.4   0.0       2.1   7.7e+02     203     242 ..     373     409 ..     367     426 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.8e-07
    TIGR03594 285 egkalvivvNKwDlv....kdekeleelkkele..eklkflkfapivfiSAltgkgveklleaikevyesls 350
                   + +l ++vNK+Dl+    + ++ ++ + +e++  ++l++++  +++ +SA+tg+g+ kl++a+++++++ +
  MMETSP1174-20130828|10802_1 248 GKNPLFVAVNKVDLLpsdySPTRVRDWVVEECRywASLEQIRPNNVHLVSAKTGSGIGKLMDAVRDLAKRRK 319
                  356999*********7543345566778888886678999999*********************99988765 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.5e-06
    TIGR03594 176 ikiaiiGrpNvGKStLvNallge 198
                  + i ++G  NvGKS++vN+l++ 
  MMETSP1174-20130828|10802_1 320 CDIYVVGAANVGKSSFVNRLCNM 342
                  56778888888888888888765 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.1
    TIGR03594 203 vsdiaGtTrDsidievevkgkkylliDTAGirrkkkveek 242
                  +s  +GtT    +i v   g+ + liD  Gi  +++++++
  MMETSP1174-20130828|10802_1 373 TSALPGTTLSFLKIAV---GEGVSLIDSPGIILRHQLTSR 409
                  6777888887777765...677888888888777766654 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   6.1e-06      37     141 ..     238     342 ..     224     355 .. 0.81
   2 !   10.1   0.0   0.00021     0.079     140     177 ..     367     404 ..     362     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.6e-08
    TIGR03596  37 sknpeleelvknkprlivlnkaDladpektk.kwlkyfeekgkkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakk 141
                  s  p+l++l+++ p  + +nk Dl  ++    +  ++  e+      +++ ++++v+ + ++  + + +  ++  +   k +++ + vvG  NvGKS+++Nrl++ 
  MMETSP1174-20130828|10802_1 238 SVLPRLASLAGKNPLFVAVNKVDLLPSDYSPtRVRDWVVEECRYWASLEQIRPNNVHLVSAKTGSGIGKLMDA-VRDLAKRRKCDIYVVGAANVGKSSFVNRLCNM 342
                  6668899999999***********9887765145666668888888899999999999999988888888877.344456788********************986 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00021
    TIGR03596 140 kkkvakvgnkpgvTksqqwiklskeleLlDtPGilwpk 177
                  +k+ + + + pg T s   i ++++++L+D+PGi++ +
  MMETSP1174-20130828|10802_1 367 QKQGITTSALPGTTLSFLKIAVGEGVSLIDSPGIILRH 404
                  5677889999***********************98764 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.99   3.7e+02     159     184 ..     286     310 ..     249     312 .. 0.69
   2 !   19.4   0.0     4e-07   0.00015       9      42 ..     310     343 ..     304     350 .. 0.90
   3 ?    2.8   0.0     0.047        18      40      73 ..     366     399 ..     363     401 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.99
    TIGR03598 159 kkeeekvevllfSslkkegieelkae 184
                  ++ +   +v l+S++++ gi +l+++
  MMETSP1174-20130828|10802_1 286 EQIRP-NNVHLVSAKTGSGIGKLMDA 310
                  33333.48999********9999876 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4e-07
    TIGR03598   9 klkqlpedklpeiafaGrSNvGKSsliNaLtnrk 42 
                  ++++l ++++ +i ++G  NvGKSs++N L+n +
  MMETSP1174-20130828|10802_1 310 AVRDLAKRRKCDIYVVGAANVGKSSFVNRLCNME 343
                  578899999*********************9965 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.047
    TIGR03598  40 nrkklartSktPGrTqlinffevneelrlvDlPG 73 
                   +k+   tS  PG T +     v e + l+D PG
  MMETSP1174-20130828|10802_1 366 PQKQGITTSALPGTTLSFLKIAVGEGVSLIDSPG 399
                  5788889********99999999**********9 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.34   1.3e+02     112     126 ..     249     263 ..     236     312 .. 0.64
   2 !    8.0   0.0    0.0014       0.5       5      26 ..     321     342 ..     317     354 .. 0.86
   3 ?    2.5   0.0     0.063        24      26      70 ..     368     407 ..     364     434 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.34
    TIGR00231 112 gvpiilvvnKiDlkd 126
                  + p+ ++vnK+Dl  
  MMETSP1174-20130828|10802_1 249 KNPLFVAVNKVDLLP 263
                  568899999999865 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0014
    TIGR00231   5 kivivGhvdvGKstLlnsllkn 26 
                   i +vG  +vGKs+  n+l   
  MMETSP1174-20130828|10802_1 321 DIYVVGAANVGKSSFVNRLCNM 342
                  699***************9765 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.063
    TIGR00231  26 nkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdair 70 
                  ++++ t++ pg+t ++ +     +G    v l+D +G + + +++
  MMETSP1174-20130828|10802_1 368 KQGITTSALPGTTLSFLKI-AVGEG----VSLIDSPGIILRHQLT 407
                  678899999*********5.55566....99******76665443 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0001     0.038       3      23 ..     322     342 ..     320     345 .. 0.90
   2 ?   -0.5   0.0      0.37   1.4e+02      28      71 ..     373     413 ..     362     427 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
    TIGR00436   3 vailGrpnvGKSTLlNkllgq 23 
                  + ++G +nvGKS ++N+l++ 
  MMETSP1174-20130828|10802_1 322 IYVVGAANVGKSSFVNRLCNM 342
                  679***************985 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.37
    TIGR00436  28 vSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvk 71 
                  +S  + TT+  ++  + eg   + +iD PG+  +++ + +l   
  MMETSP1174-20130828|10802_1 373 TSALPGTTLSFLKIAVGEG---VSLIDSPGIILRHQLTSRLSIS 413
                  5667777777666555554...4589999998887777666555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.7e-05     0.025       6      30 ..     318     342 ..     281     347 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.7e-05
    TIGR03918   6 erlhialfGrrNaGKSsliNaltgq 30 
                   +  i ++G  N+GKSs++N l++ 
  MMETSP1174-20130828|10802_1 318 RKCDIYVVGAANVGKSSFVNRLCNM 342
                  567899****************986 PP

>> TIGR02836  spore_IV_A: stage IV sporulation protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.03       4      39 ..     308     341 ..     306     345 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.1e-05
    TIGR02836   4 vdiykdiaertqGdiyigvvGpvrtGkstfikkfme 39 
                  +d  +d+a+r + diy  vvG+   Gks+f+ ++ +
  MMETSP1174-20130828|10802_1 308 MDAVRDLAKRRKCDIY--VVGAANVGKSSFVNRLCN 341
                  6889************..59***********99865 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13        49     326     348 ..     288     312 ..     238     315 .. 0.56
   2 ?    8.7   0.0   0.00042      0.16     187     218 ..     317     348 ..     311     350 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.13
    TIGR03156 326 k..eeavlvsAkkgegleeLleaie 348
                     ++  lvsAk+g+g+ +L++a++
  MMETSP1174-20130828|10802_1 288 IrpNNVHLVSAKTGSGIGKLMDAVR 312
                  1323355799999999999999987 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00042
    TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaed 218
                  ++   + +vG  N GKs+++n+l++ e   +d
  MMETSP1174-20130828|10802_1 317 RRKCDIYVVGAANVGKSSFVNRLCNMEGGHAD 348
                  45567899****************99876666 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016     0.061     101     149 ..     292     346 ..     269     365 .. 0.72
   2 ?   -3.4   0.0       3.3   1.2e+03     164     183 ..     380     400 ..     378     402 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
    TIGR00157 101 kvllvsvkneegleelkeklkk...ris..v.faGqSGVGKSSLiNlldpevkqk 149
                  +v lvs+k+  g+ +l++++++   r+   + ++G + VGKSS +N+l      +
  MMETSP1174-20130828|10802_1 292 NVHLVSAKTGSGIGKLMDAVRDlakRRKcdIyVVGAANVGKSSFVNRLCNMEGGH 346
                  5789999999999999987653222332223268*************98765554 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.3
    TIGR00157 164 Ttsvelfhl.qgGliiDtPGf 183
                  T s   + + +g  +iD+PG+
  MMETSP1174-20130828|10802_1 380 TLSFLKIAVgEGVSLIDSPGI 400
                  555555666567789*****8 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   5.4e+02     316     330 ..     249     263 ..     236     276 .. 0.82
   2 ?    9.9   0.0    0.0002     0.075     203     232 ..     314     342 ..     283     346 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.5
    TIGR00450 316 kkdlllvlNKiDLae 330
                  k++l++ +NK DL  
  MMETSP1174-20130828|10802_1 249 KNPLFVAVNKVDLLP 263
                  7899********983 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0002
    TIGR00450 203 leklkdglklaivGktNvGKSSLlNallkk 232
                  l k++    + +vG +NvGKSS +N l + 
  MMETSP1174-20130828|10802_1 314 LAKRR-KCDIYVVGAANVGKSSFVNRLCNM 342
                  44444.46899**************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 1449.44
//
Query:       MMETSP1174-20130828|10809_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 481.12
//
Query:       MMETSP1174-20130828|10811_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|10814_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|10808_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 893.75
//
Query:       MMETSP1174-20130828|10810_1  [L=955]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.97
# Mc/sec: 1299.48
//
Query:       MMETSP1174-20130828|10813_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-08   31.1   0.0    4.6e-08   30.5   0.0    1.2  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
    0.00031   18.0   0.0      0.068   10.4   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00071   17.0   0.0      0.025   12.0   0.0    2.3  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0018   15.7   0.0     0.0026   15.1   0.0    1.2  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2


Domain annotation for each model (and alignments):
>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.5e-11   4.6e-08      56     135 ..     140     219 ..     114     236 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 4.5e-11
    TIGR03100  56 aGlpvlRfDyrGmGDsegelstFedi.eaDiaAAidafleaapeleeivlwGlCDaAsAvllyatadervaglvllnPWvr 135
                   G++ + fD  G G s+ge  +     ++D++A ++ ++e   +++ i+lwG   +A+ +ll++  d  +a +vl  P+  
  MMETSP1174-20130828|10813_1 140 LGVTLFAFDFTGSGLSDGEYVSLGFFeREDLKAVVHYLRE-SGNVSTIALWGRSMGAATSLLHGDRDPSIAAMVLDSPFSD 219
                  59****************9987665416799998887776.689********************************99944 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0     0.002       2.1      38     109 ..     140     213 ..     111     232 .. 0.82
   2 !   10.4   0.0   6.7e-05     0.068     186     250 ..     268     330 ..     254     331 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.002
    TIGR02427  38 kdfrvlryDkrGHGlSdvpegpysi...edladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvl 109
                    + + ++D  G GlSd   ++ +    edl   v  l ++ +++++a++G S+G ++++  +  r   ++a+vl
  MMETSP1174-20130828|10813_1 140 LGVTLFAFDFTGSGLSDGEYVSLGFferEDLKAVVHYLRESGNVSTIALWGRSMGAATSLLHG-DRDPSIAAMVL 213
                  5677889999******876666543333999999999******************99876544.44455666666 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 6.7e-05
    TIGR02427 186 rerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                   +++++  +P+l +aG+ D    p++ r+i ++ +g +  +i e+ H  n ++p  + + ++ fl
  MMETSP1174-20130828|10813_1 268 IAHADRCFIPALFVAGEGDDFIKPDHSRNIHAKYAGDKNLVIVEGDH--NSQRPRFLFDSVAIFL 330
                  56778889******************************999999999..5677888877777777 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   2.4e-05     0.025      18     139 ..     107     226 ..      94     234 .. 0.84
   2 ?    2.5   0.0     0.019        20     231     270 ..     275     315 ..     257     326 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
    TIGR01250  18 kvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissmlasipeyvke 139
                    k++g+k  ++ +HG  +   e + +l+  l+ gv+++ +D  Gsg Sd        +++ +   + +  +re  ++  + l g+S G++  +    ++ + + ++++ s+ +++ +  +e
  MMETSP1174-20130828|10813_1 107 SNKKQGPKPCVIYMHGNSSARLEAIPQLSLCLALGVTLFAFDFTGSGLSDGEYV-SLGFFEREDLKAVVHYLRESGNVSTIALWGRSMGAATSLLH-GDRDPSIAAMVLDSPFSDLTQLAEE 226
                  5677999*******************************************9855.55899999999999999999999999999999998866554.4667777788888777777666665 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.019
    TIGR01250 231 kvPtLltvge.fdemtpeaaremqekiaksrlvvfedgshl 270
                   +P+L++ ge +d ++p++ r+++ k a+ +  v+ +g h 
  MMETSP1174-20130828|10813_1 275 FIPALFVAGEgDDFIKPDHSRNIHAKYAGDKNLVIVEGDHN 315
                  58*******9345689************9999999988886 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06    0.0026      47     114 ..     132     199 ..     105     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.6e-06
    TIGR03101  47 lqakalaaeGfgvlqiDlyGtGDSaGdfaeaswdvWkeDvaaalrwlkekga.qavtLwglrlgalLal 114
                   q + + a G ++ ++D  G G S G+++   +   +eD++a +++l+e g  +++ Lwg  +ga+  l
  MMETSP1174-20130828|10813_1 132 PQLSLCLALGVTLFAFDFTGSGLSDGEYVSLGF-FEREDLKAVVHYLRESGNvSTIALWGRSMGAATSL 199
                  555566789********************9887.459************9963689********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 1235.64
//
Query:       MMETSP1174-20130828|10822_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 480.44
//
Query:       MMETSP1174-20130828|10823_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-35  119.1   0.0    5.2e-35  118.9   0.0    1.0  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   1.3e-38   5.2e-35      58     199 ..       4     155 ..       2     167 .] 0.85

  Alignments for each domain:
  == domain 1    score: 118.9 bits;  conditional E-value: 1.3e-38
    TIGR00027  58 adfvavRtrffDdflleavaagvrqvViLgAGlDtRAyRldwpegtrv.FEvDqpevlefKekvlkelgae......ppahrraVavDlr..qdwpaaLaaaGfdaeaptawlaeGllvYLteeavdallafiaelsapGSrlafdvvek..l 199
                  +++ a+Rtrf+Dd + + + + +rq+V LgAG+DtRAyRl+  ++  v +EvD + ++++Ke v ++l+++       +  + ++  D+   + ++++L ++ fd+++p+++laeGl++YL  e+ ++ll+ i +++apGS l+++++ek   
  MMETSP1174-20130828|10823_1   4 TQWTACRTRFIDDEITKHAVS-MRQLVNLGAGFDTRAYRLEAYSNFDVsYEVDMETNQQVKEPVFENLRNAdsgmksYCGTVENISHDFLseTTLEQVLERHNFDKTQPALFLAEGLIMYLGDEGEAKLLNEISTAAAPGSVLILNFMEKpgT 155
                  5899********998877756.9*********************99999*************998877654111111456788999**976689*****************************************************987432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 565.18
//
Query:       MMETSP1174-20130828|10824_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.99
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|10826_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|10830_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    4.4  10.7        2.4    4.3   7.4    1.0  1  TIGR01480 copper_res_A: copper-resistance protein, CopA family
        3.5    5.4  20.2        3.8    5.3  14.0    1.0  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.4    0.0012       2.4     362     432 ..       7      78 ..       2      93 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0012
    TIGR01480 362 krplltmkdmgmgnmdhggsdsskasaknmaglameasaksaap...adhsmasdaalkvdstkarpaseelnp 432
                  ++p  + + m   +m+h  s++ ++++++ +g+a+ ++++ ++    + hs +++     +++ ++p++++++ 
  MMETSP1174-20130828|10830_1   7 NPPQQQQQQMPTQGMAHS-SQQQQQQIMPKQGMAHPPQQQQQMLmqgMAHSAQQQQLIS-KQGMVHPPQQQQQQ 78 
                  567777888998889999.6668889999999999999999987555677766655554.67778877766543 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  14.0    0.0019       3.8      72     158 ..       7      94 ..       2      95 .] 0.76

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0019
    TIGR02205  72 pqpseqkepsiseavdkerkksvedeeasvpa....qpvqqqldlpqaekvaqqtvepreakslavasaeeeevekalevaakpkekdkvi 158
                    p++q++ ++++ ++++++++++++ +++++    q++qq l +  a++ +qq++  +++    v  +++++ + +++ +a+p ++++++
  MMETSP1174-20130828|10830_1   7 NPPQQQQQQMPTQGMAHSSQQQQQQIMPKQGMahppQQQQQMLMQGMAHSAQQQQLISKQGM---VHPPQQQQQQMPVQGMAHPYQQQQIM 94 
                  4588999999999*****************97665566666666666777777777666665...57778888888888899999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 379.97
//
Query:       MMETSP1174-20130828|10837_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1095.82
//
Query:       MMETSP1174-20130828|10843_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|10842_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.5   0.1     0.0022   15.0   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.3e-07    0.0022     117     157 ..      29      69 ..      21      77 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.3e-07
    TIGR01628 117 sckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndk 157
                   + + ++eeGkS gY+ v+f+  + A eA  +l   +ln  
  MMETSP1174-20130828|10842_1  29 KVDLQMNEEGKSLGYALVSFNSAKDAVEACVELHHEVLNRT 69 
                  45555666666666666666666666666555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1436.65
//
Query:       MMETSP1174-20130828|10844_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.2  12.8     0.0051   13.9   8.9    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
  ------ inclusion threshold ------
       0.04    9.4  27.7      0.053    9.0  19.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.064    8.7  30.5      0.082    8.4  21.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.3    5.1   5.3        1.5    4.9   3.7    1.1  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   8.9     5e-06    0.0051      39     231 ..      29     220 ..      12     249 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-06
    TIGR03752  39 laelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqa.kleelldelqkkledvaaekesseedlpvglGleegdkaqses.kdevvwvepsdakatdregkksapskesfptsfdnalkrkkkaleavakaeeaekakskekk 231
                  l  ++ +++ +++i+    ++t + + ae+++l++el+ ++++  +l + nerlk++ +s+  r++ +++  +++++++k + ke+q   l++++ +l+ ++++ +++++++++ l  ++  e++ +a++e+   ++  ++ ++ + ++++ ++  ++++++ + f +al++ k+++e++ k e++++ ++ +kk
  MMETSP1174-20130828|10844_1  29 LEAVKLQQTAEIEIANGLDAET-KRIFAENSSLKEELRFIRDHSATLDSANERLKQEIKSL--RLEARVTESTQNVHAKKGHKKENQVrDLTNEIVNLEAHVKEIQQRESAQSTKLISAVNKEKELRAEEEKaLRHLLMIKNRELAHVKTHARTILEQRTEVEQFFLDALDQCKAKIEEERKREQRAELAAYRKK 220
                  4444555566667777666776.55889999999999999999999999999999997776..577788888888777776655544438999999999999999999999999999999666655554444489999*******99999999888888888888899999999999888888855444444443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  19.2   5.2e-05     0.053     668     860 ..      34     229 ..       9     237 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5.2e-05
    TIGR02169 668 lvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleekl...aklkealedleaelseekieeieeelekleeevsriearleeieae.lnklelekelleeeiqelqeeieeleeqkkeiekeieel 860
                  l++++e e ++ l ++ + + +e +sl++elr i+ ++  l s+ ++ +++i+ ++ e+   e+ ++  +++ +++e++++ l +e+ + ++++ke++++ +++  kl    + +++l + e++  ++ +  +++el +++++ + i ++  e+e+  l++l++ k+  eee++ +q+  e +  +kk++e++ +++
  MMETSP1174-20130828|10844_1  34 LQQTAEIEIANGLDAETKRIFAENSSLKEELRFIRDHSATLDSANERLKQEIKSLRLEARVTESTQNVHAKKGHKKENQVRDLTNEIVNLEAHVKEIQQRESAQSTKLisaVNKEKELRAEEEKALRHLLMIKNRELAHVKTHARTILEQRTEVEQFfLDALDQCKAKIEEERKREQR-AELAAYRKKMLEARTDKQ 229
                  4555566666677788888888888888888888888888888888888888888888888888888888888888888888888888888888888877777766651113344555555666667778888888888888888888888888886245555666666665554443.344455666666666654 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  21.2     8e-05     0.082     265     457 ..      25     215 ..       3     242 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 8e-05
    TIGR02168 265 leeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleee 457
                  ++ +le ++l+++   e ++ l++e +++ ae s l++e++++++  + l++ +e+l+++++ l+ +   +e   +  +++  + ++++ +l +e+ ++ea ++e ++r++++ ++l ++ ++ +el+ +++++  +l  ++++  +  ++++r+  e++++    + +  +l+++++++ee+++ ++ +e +
  MMETSP1174-20130828|10844_1  25 KDFDLEAVKLQQTAEIEIANGLDAETKRIFAENSSLKEELRFIRDHSATLDSANERLKQEIKSLRLEARVTESTQNVHAKKGHKKENQVRDLTNEIVNLEAHVKEIQQRESAQSTKLISAVNKEKELRAEEEKALRHLLMIKNRELAHVKTHARTILEQRTE--VEQFFLDALDQCKAKIEEERKREQRAELA 215
                  445566666666666666666666666666666666666666666666666666666666666665555555555555555555666666666666666666666666666666666666666666666665555555444433222222222222222222..22223455555555555544433333222 PP

>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.7    0.0015       1.5     401     508 ..      55     160 ..      19     224 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0015
    TIGR00926 401 llskeekesksgieskesskkpngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialskeeses 508
                    + + ke+   i  ++ + + + ++ l++++    l   v++ +++v+ +k+++k   v + + ++++  a+ +++++ +  +s +l+s++nke +++   +e++  
  MMETSP1174-20130828|10844_1  55 AENSSLKEELRFIRDHSATLD-SANERLKQEIKSLRLEARVTESTQNVHAKKGHKKENQVRDLTNEIVNLEAHVKEIQQRESAQSTKLISAVNKE-KELRAEEEKALR 160
                  333344555666777777776.68899999**9999*99************************9*******************************.777766665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       519  (0.126524); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1155.80
//
Query:       MMETSP1174-20130828|10848_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1164.33
//
Query:       MMETSP1174-20130828|10849_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-16   56.8   0.0    2.5e-16   56.6   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.6e-06   23.8   0.0    8.8e-06   23.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.2e-19   2.5e-16       2     246 ..      42     276 ..      41     307 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.2e-19
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaad.G..aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqG.as.vaevlykqLsPvdvslPsaiaghpLgevLRkaln....kdvrqRaasaealaerfra 246
                  t++  a+k++ + +  ++ l +R   e  l    + P iv+ + +  a+++ ++   e+ +G  l +++  + G   L +++ +  ++ v +al + h + v +RD+kP+nim++ ++     k++DFG    lp  +         +  ++GsP+Y +Pe   g+    k+D++a G+++ e +  k+  +   s   +++ k L  +++ +P     h   +  R+a++    ++   Raa      +++r 
  MMETSP1174-20130828|10849_1  42 TKEVFAMKVMNKRHLMNQGLLKRAEYERRLTRTFKSPFIVQFFWD-YADQNEIYIKMEFLQGGDLYNRIHHKsGskELGTNQIVFYLASVCEALFHIHGHEVCYRDIKPENIMLTSTGY---VKLVDFGTCKYLPTGKL--------AYTLIGSPEYLSPEAALGNGYSQKADFWATGILLCEMMFTKTPFKNpRSdKMQIVSKILETHKINFPRGAR-HSSNASFRDAVRnlanRQLNRRAA------DKVRV 276
                  566679***********************************9855.466668*************9999765243358889999999****************************9985...79**********97655........45589*******************************98776665541332568999999999999998643.444555555554000044444433......33333 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.3e-09   8.8e-06      42     138 ..      63     170 ..      30     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.3e-09
    TIGR03724  42 eRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel..........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  +R   E rl+++ k+  +        d++e  i me ++g +l + +++k+            +l +v e++ ++H +++++ D+ ++Ni+++ ++ + l+DfG  k+
  MMETSP1174-20130828|10849_1  63 KRAEYERRLTRTFKSPFIVQFFWDYADQNEIYIKMEFLQGGDLYNRIHHKSGskelgtnqivFYLASVCEALFHIHGHEVCYRDIKPENIMLTsTGYVKLVDFGTCKY 170
                  5666666666666665555555555789999************99998866577889998877899*************************96267788*****7765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 875.44
//
Query:       MMETSP1174-20130828|10853_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 885.10
//
Query:       MMETSP1174-20130828|10860_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1174-20130828|10863_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1073.91
//
Query:       MMETSP1174-20130828|10867_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.64
# Mc/sec: 1022.92
//
Query:       MMETSP1174-20130828|10870_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.95
# Mc/sec: 287.60
//
Query:       MMETSP1174-20130828|10868_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.10s 00:00:00.44 Elapsed: 00:00:00.50
# Mc/sec: 1436.04
//
Query:       MMETSP1174-20130828|10873_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1174-20130828|10875_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|10876_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|10879_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|10880_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|10883_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|10884_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|10891_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 157.13
//
Query:       MMETSP1174-20130828|10888_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1039.82
//
Query:       MMETSP1174-20130828|10892_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   13.9   0.1      0.016   12.9   0.1    1.4  1  TIGR00311 aIF-2beta: putative translation initiation factor aIF-2, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00311  aIF-2beta: putative translation initiation factor aIF-2, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.8e-06     0.016      81     131 ..     166     217 ..     156     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.8e-06
    TIGR00311  81 fteellkkriedyvrkyvicrecnkpdtkiike.grvlllkclacGakrpvr 131
                  +  +l+++ +  +vr++  cr c +    i  e g   +l c +cG+ + +r
  MMETSP1174-20130828|10892_1 166 IVTMLIDDALGLWVRHFCSCRSCLSTTVAIGSEdGETIFLECHSCGTTQALR 217
                  556788888899**************9999876267889*******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 756.40
//
Query:       MMETSP1174-20130828|10895_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 174.69
//
Query:       MMETSP1174-20130828|10890_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 218.46
//
Query:       MMETSP1174-20130828|10905_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 255.98
//
Query:       MMETSP1174-20130828|10903_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|10906_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|10908_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.1   2.2      0.019   12.5   1.2    1.5  2  TIGR03384 betaine_BetI: transcriptional repressor BetI


Domain annotation for each model (and alignments):
>> TIGR03384  betaine_BetI: transcriptional repressor BetI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   4.5e-06     0.019      72     115 ..      19      64 ..       9      98 .. 0.69
   2 ?   -1.2   0.0     0.071   2.9e+02      67      96 ..      76     106 ..      66     116 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.5e-06
    TIGR03384  72 varlak..aksprerleaiveanfdesqfseeavkaWlafwaeaqh 115
                  ++r +k  a+s + + ++ ++  + ++q +e+  +aWl+f++    
  MMETSP1174-20130828|10908_1  19 QKRAKKaaAQSTQRKRKSAIQRDLISEQHNEQRSRAWLTFYSLPEV 64 
                  33333333555555556667888999999************97653 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.071
    TIGR03384  67 lkaavvarlak..aksprerleaiveanfdes 96 
                  l+ +++++ a+   ++p+ r +a ++a f++ 
  MMETSP1174-20130828|10908_1  76 LSYEMRSEAAAkiTDAPTTRSMA-MDATFSKW 106
                  45555555544445566666554.56666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.63
# Mc/sec: 289.12
//
Query:       MMETSP1174-20130828|10909_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 665.68
//
Query:       MMETSP1174-20130828|10911_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   16.0   1.0       0.71    7.8   0.1    2.5  2  TIGR01999 iscU: FeS cluster assembly scaffold IscU
     0.0044   13.1   0.0       0.55    6.2   0.0    2.2  2  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
  ------ inclusion threshold ------
       0.11    9.9   3.6       0.12    9.8   0.1    2.1  2  TIGR03825 FliH_bacil: flagellar assembly protein FliH


Domain annotation for each model (and alignments):
>> TIGR01999  iscU: FeS cluster assembly scaffold IscU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0016       2.2      60      79 ..     199     218 ..     176     239 .. 0.87
   2 !    7.8   0.1   0.00052      0.71      58      83 ..     444     467 ..     405     482 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0016
    TIGR01999  60 GcGsaiassslvtelikGks 79 
                   cGsa+a+s +v+ ++ G++
  MMETSP1174-20130828|10911_1 199 CCGSAVAASGYVAGVLSGEA 218
                  5*************999976 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00052
    TIGR01999  58 tfGcGsaiassslvtelikGksleea 83 
                     cGsa+a+s +v+++ kG++  ea
  MMETSP1174-20130828|10911_1 444 GSCCGSAVAASGVVSSIFKGEA--EA 467
                  345****************985..44 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0004      0.55     476     520 ..     258     302 ..     244     304 .. 0.90
   2 !    4.4   0.0    0.0014       1.9     476     520 ..     504     548 ..     489     554 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0004
    TIGR02288 476 lgvyttdeevveaveelaedaavalslnltGGvfvnqsaafsdfh 520
                   ++y +++e++ ++ e   +a +   + + GG+ +n  a+fsd++
  MMETSP1174-20130828|10911_1 258 YALYDAQKEFIGKIVEQKSSAVADGNIAVLGGIQINTPAGFSDYY 302
                  67899999***99999999999999******************96 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0014
    TIGR02288 476 lgvyttdeevveaveelaedaavalslnltGGvfvnqsaafsdfh 520
                   ++y +++e+++++ e++ +      + + GGv +n  a+f+d++
  MMETSP1174-20130828|10911_1 504 YALYDAQTELMTRIVEASASGVSDGLIAVLGGVQINTPAGFTDYY 548
                  57899999999999998877767777999**************96 PP

>> TIGR03825  FliH_bacil: flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.055        75      91     145 ..     206     260 ..     202     280 .. 0.78
   2 ?    9.8   0.1   8.5e-05      0.12     100     145 ..     462     506 ..     453     521 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.055
    TIGR03825  91 qeGyedGfqaGesealseyqsiideAkaiveeAkddyeekiesaqekiielAlal 145
                  + Gy +G   Ge++  ++  + ++  +a v       +e++e+a +k+ el  al
  MMETSP1174-20130828|10911_1 206 ASGYVAGVLSGEAKKADIPDDALHAQQAFVGDMLLPHAERLEEADDKMQELPYAL 260
                  6799999999999999999999999999999999999999999999999997665 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 8.5e-05
    TIGR03825 100 aGesealseyqsiideAkaiveeAkddyeekiesaqekiielAlal 145
                  +Ge+ea ++  +++d  +  v++A + y+e++e+a ek++el  al
  MMETSP1174-20130828|10911_1 462 KGEAEAAKI-PDVVDAQQYFVNKALQPYAERLEKADEKMVELPYAL 506
                  688887654.5778888889**********************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 1388.33
//
Query:       MMETSP1174-20130828|10916_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|10918_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 427.02
//
Query:       MMETSP1174-20130828|10917_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1881.91
//
Query:       MMETSP1174-20130828|10919_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 881.12
//
Query:       MMETSP1174-20130828|10912_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-174  577.4   0.3   3.6e-174  577.3   0.2    1.0  1  TIGR00936 ahcY: adenosylhomocysteinase
    2.6e-05   21.5   0.3    4.5e-05   20.7   0.2    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
     0.0028   14.6   0.2     0.0052   13.8   0.1    1.4  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0033   14.3   0.1     0.0048   13.7   0.0    1.2  1  TIGR00465 ilvC: ketol-acid reductoisomerase
     0.0076   13.3   0.3      0.011   12.8   0.2    1.2  1  TIGR01921 DAP-DH: diaminopimelate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.3   0.2  4.4e-177  3.6e-174       1     416 []       6     471 ..       6     471 .. 0.98

  Alignments for each domain:
  == domain 1    score: 577.3 bits;  conditional E-value: 4.4e-177
    TIGR00936   1 ykvkdlslaeeGrkkielaerempvLkkireefaeekPlkGvriaaclhltvktavLietLkalGaevalascnilstqddvaaalakakgvpvfawkGeteeeyyealekvle........kepniilddGadlivlvhk.........................................kreellekvlGvseetttGvirLralakeGkLkfpviavndavtkslfdnryGtgqslldgilratnlliaGktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvtatGnkdvireehlekmkdgailanaGhfdveidvkaLeelakekkevkkqvdeyklkdGrriillaeGrLvnLaaaeGhpsevmdmsfanqalaaeellkkkd..klek.kvyrlpkeldeavarlklealgveldkLteeqkeylesweeGt 416
                  y+v+d++la++Grk+ielae emp+L++ r+e+ ++  +k +ria++lh+t++tavLietLkalG ++++ scni+stqd++aaa+a++   +vfawkGet eey+e+  ++++          p++i+ddG+d++ lvh+                                         k++++++  +GvseetttGv+rL+++ ++ +L f++i+vnd+vtks+fdn yG+++sl dgi+rat++++aGk +v++GyG+vGkG+a +++  G    vte+dpi al+aam+Gf v t+e+ ++  di++t+tGnkd+ir eh++kmk+++i++n+Ghfd+ei++++Le+ a++++++k+qvd+y++++G  ii+laeGrL+nL++a+Ghps+vm++sf+nq+la++el+k+kd  k+ek kvy+lpk lde+va l+l +lgvel++Lt++q++y+++ ++G+
  MMETSP1174-20130828|10912_1   6 YRVADITLADFGRKEIELAEFEMPGLMSCRKEYPSD-FFKNARIAGSLHMTIQTAVLIETLKALGGDIRWCSCNIFSTQDHAAAAIARDGSAAVFAWKGETLEEYWECTMNAITwttpdakgDGPDLIVDDGGDMTLLVHEgakaealfekdgtvpdpsstdnaefkiilqmicrtlktdpkKWTKVVDRFIGVSEETTTGVHRLYQMSEKNELFFSAINVNDSVTKSKFDNLYGCKHSLPDGIMRATDVMLAGKRAVICGYGDVGKGCAFAMKAAGCITFVTEIDPICALQAAMEGFAVKTLEQVVDFVDIVITTTGNKDIIRLEHMSKMKNNCIVGNIGHFDNEIQMAELEA-ATTRNNIKPQVDKYMFPNGDGIIILAEGRLLNLGCATGHPSFVMSNSFTNQTLAQIELFKEKDsgKYEKgKVYVLPKVLDEKVAMLHLGSLGVELTQLTDDQSKYISVLKTGP 471
                  89*******************************865.7***************************************************99**********************999**999889************************************************************************************************************************************************************************************************************************************86.78899******************************************************988633688747************************************999986 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   5.5e-08   4.5e-05     142     236 ..     249     341 ..     246     346 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5.5e-08
    TIGR02853 142 iestdftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDivintiPal.vltkdvlsklpkhavi 236
                  ++ td+ + g r+++ G+G +Gk  a +++a g+  +v+     d   +l++++e + +k le+ v  +Divi t  ++ ++  + +sk+++++++
  MMETSP1174-20130828|10912_1 249 MRATDVMLAGKRAVICGYGDVGKGCAFAMKAAGCITFVTE---IDPICALQAAMEGFAVKTLEQVVDFVDIVITTTGNKdIIRLEHMSKMKNNCIV 341
                  7899******************************999975...445567888999******************99975439999*******99987 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   6.4e-06    0.0052     134     224 ..     250     334 ..     239     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.4e-06
    TIGR03911 134 ealdllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkekelleklvkdlpevgieaeesealkkfslifeatPeagliseevlsd 224
                   a d++ ag   k  ++ G G vG++ a+a+   G   +v +++   + +++ +     + ++ ++ +   ++++  t ++++i+ e++s+
  MMETSP1174-20130828|10912_1 250 RATDVMLAG---KRAVICGYGDVGKGCAFAMKAAGCITFVTEIDPICALQAAMEG--FAV-KTLEQVVDFVDIVITTTGNKDIIRLEHMSK 334
                  588999999...777899*************************998887776665..233.3444556667999999*******9999864 PP

>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.9e-06    0.0048       1      69 [.     256     323 ..     256     349 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.9e-06
    TIGR00465   1 lkgkkvaiiGyGsqGeaqalnlrdsglnvivglrkeaaswkkAeedGfkvltveeaikkadlimiLlpD 69 
                  l+gk+ +i GyG  G++ a  ++ +g    v+         +A  +Gf v+t+e++++  d++++ + +
  MMETSP1174-20130828|10912_1 256 LAGKRAVICGYGDVGKGCAFAMKAAGCITFVTEID-PICALQAAMEGFAVKTLEQVVDFVDIVITTTGN 323
                  6899**********************866655444.4666677889****************9987654 PP

>> TIGR01921  DAP-DH: diaminopimelate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   1.4e-05     0.011       5     100 ..     260     356 ..     256     365 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
    TIGR01921   5 raaivGyGnlGksvekaisqaPdlelvgvfsrrdaetldeelavyavaeaekeledvdvlilctgsatdlkeqke...ylaafintvdsfdihadipel 100
                  ra i GyG++Gk+  +a+++a  + +v+ +      +l+  +  +av+  e+  + vd++i  tg +  ++ ++    +    +  +  fd+  +++el
  MMETSP1174-20130828|10912_1 260 RAVICGYGDVGKGCAFAMKAAGCITFVTEIDPIC--ALQAAMEGFAVKTLEQVVDFVDIVITTTGNKDIIRLEHMskmKNNCIVGNIGHFDNEIQMAEL 356
                  999*****************99877665554444..67889999*********************9988764433000233344456667776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.56
# Mc/sec: 1128.98
//
Query:       MMETSP1174-20130828|10922_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 861.81
//
Query:       MMETSP1174-20130828|10924_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1292.10
//
Query:       MMETSP1174-20130828|10929_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1174-20130828|10927_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1364.82
//
Query:       MMETSP1174-20130828|10930_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 470.88
//
Query:       MMETSP1174-20130828|10933_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|10937_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 952.80
//
Query:       MMETSP1174-20130828|10940_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   41.0   0.0    5.8e-07   27.2   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.4e-10   5.8e-07       7      35 .]       4      32 ..       2      32 .. 0.95
   2 !   12.1   0.0   8.6e-06     0.035       1      21 [.      33      53 ..      33      53 .. 0.93

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.4e-10
    TIGR00756  7 isglckagrveeAlelfdeMkergivPda 35
                 is++ k +++ +Alel++eM+ +g+ Pd+
  MMETSP1174-20130828|10940_1  4 ISACEKGKQWVKALELLQEMRQSGVQPDV 32
                 99*************************96 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.6e-06
    TIGR00756  1 vtyntlisglckagrveeAle 21
                 +++++ is++ k g++e+Ale
  MMETSP1174-20130828|10940_1 33 ISFSAAISACEKCGQWEKALE 53
                 5899***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|10943_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|10945_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 229.55
//
Query:       MMETSP1174-20130828|10946_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 984.84
//
Query:       MMETSP1174-20130828|10949_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 651.15
//
Query:       MMETSP1174-20130828|10956_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 392.49
//
Query:       MMETSP1174-20130828|10951_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1485.64
//
Query:       MMETSP1174-20130828|10954_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   14.7   0.1     0.0015   14.3   0.1    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   3.7e-07    0.0015      51     169 ..      82     209 ..      34     215 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-07
    TIGR02917  51 kdpndaeaRflLgkiyle....qGdaaaAekeLrkAlslgyskeqvlplLara..yllqgkfqkvldelekksslddeeaaella..lrglAaLglgeleeAqksle.qAlaiapksleaklglAqla 169
                  +++ da++ + L+k+ +     + d+++A+k ++kA+++g++++q+++ +     +  ++   k++++ + +  + d++a   la  +      + ++ + A + ++ +A++  p +  a++glA++ 
  MMETSP1174-20130828|10954_1  82 AEQGDADSQYNLAKMIVHgmgvKIDYKEAVKWYEKAVEQGMDAAQLNLGIMYFdgMGVKKDIAKAVELYTRAADQGDPGAQFTLAsvYEHGPGQIGRNWAMATSLYNmSAQQEWPGRERANAGLARIR 209
                  678899********9886433356***********************988754215556667788887776664444443333321133223334466777888886468888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1146.66
//
Query:       MMETSP1174-20130828|10957_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|10964_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|10966_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|10969_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 399.85
//
Query:       MMETSP1174-20130828|10976_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1174-20130828|10974_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.6   2.0      0.025   11.3   1.4    1.1  1  TIGR00408 proS_fam_I: proline--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.4     6e-06     0.025     357     406 ..     152     201 ..     140     215 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6e-06
    TIGR00408 357 vlrRdekkKvevsldeleekvkelleelkedlfkkAkelveekvkeveel 406
                    rRd++++ + + ++l++++k++ ++l+++l ++A+ + ++  + ++++
  MMETSP1174-20130828|10974_1 152 TTRRDDMQQHQQQQQQLQQHIKQVQQQLHQQLTTAATTVAATAATAATTT 201
                  579*********************************99999988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       736  (0.179425); expected 82.0 (0.02)
Passed bias filter:                      363  (0.0884934); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 605.60
//
Query:       MMETSP1174-20130828|10979_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 438.54
//
Query:       MMETSP1174-20130828|10977_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-12   45.2   0.0    2.5e-12   44.7   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.7e-08   31.2   0.0    2.5e-08   30.6   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.2e-15   2.5e-12       3      75 ..      14      86 ..      12     111 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.2e-15
    TIGR02349  3 YeiLgvskdA.seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggag 75
                 Ye Lg++  + se+ei++AYr+   + HPDrn+ ++ea e f ++++Ay vL  ++++++ +++ ++ +++ + 
  MMETSP1174-20130828|10977_1 14 YECLGIDNASdSEDEIRQAYRRALVRCHPDRNS-STEAREEFARVTQAYCVLIAPHRKSRENRMFTHLFRNPEL 86
                 ******987725789******************.9***********************9999887777766544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.2e-11   2.5e-08       5      62 ..      14      72 ..      12      84 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.2e-11
    TIGR03835  5 yevLgidrDad.eqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkrar 62
                 ye Lgid  +d e+ei++a+r+   + hPDrn  ++a + fa +  a+ vL  P+++ r
  MMETSP1174-20130828|10977_1 14 YECLGIDNASDsEDEIRQAYRRALVRCHPDRNSSTEAREEFARVTQAYCVLIAPHRKSR 72
                 9******98874679****************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1732.78
//
Query:       MMETSP1174-20130828|10986_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|10987_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|10984_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 1016.80
//
Query:       MMETSP1174-20130828|10983_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1348.93
//
Query:       MMETSP1174-20130828|10985_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.56
# Mc/sec: 1236.53
//
Query:       MMETSP1174-20130828|10990_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   11.6   6.2        1.2    7.2   0.1    3.9  4  TIGR01904 GSu_C4xC__C2xCH: Geobacter sulfurreducens CxxxxCH...CXXCH domain


Domain annotation for each model (and alignments):
>> TIGR01904  GSu_C4xC__C2xCH: Geobacter sulfurreducens CxxxxCH...CXXCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.052   2.1e+02      15      32 ..      19      36 ..      18      41 .. 0.79
   2 ?    2.3   0.0    0.0099        40      15      32 ..      55      72 ..      54      83 .. 0.83
   3 ?    2.0   0.0     0.011        47      16      34 ..      92     110 ..      90     114 .. 0.74
   4 ?    7.2   0.1   0.00029       1.2      16      39 ..     128     151 ..     123     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.052
    TIGR01904 15 sGqkassaydttpaWggt 32
                 +Gq  s+ y+ +++W   
  MMETSP1174-20130828|10990_1 19 EGQGVSQDYARAVEWVRK 36
                 58888999999****765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0099
    TIGR01904 15 sGqkassaydttpaWggt 32
                 +Gq  s+ y+ +++W+  
  MMETSP1174-20130828|10990_1 55 NGQGVSQDYARAVKWYRK 72
                 6888899999*****976 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.011
    TIGR01904  16 GqkassaydttpaWggtaa 34 
                  G   s+ y+++++W+  aa
  MMETSP1174-20130828|10990_1  92 GHGVSPDYAQAVEWYRKAA 110
                  555688899*****98744 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.00029
    TIGR01904  16 GqkassaydttpaWggtaattgCa 39 
                  G   s+ y+++++W+  aa +gCa
  MMETSP1174-20130828|10990_1 128 GNGVSQDYPQAVEWYRKAADQGCA 151
                  555789999*******99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 672.32
//
Query:       MMETSP1174-20130828|10992_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1607.16
//
Query:       MMETSP1174-20130828|10994_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|10996_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|10998_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.7   0.0      0.056   11.2   0.0    1.3  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.4e-05     0.056      71     138 ..      43     107 ..      10     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
    TIGR00568  71 ksPdfPkdlgdlvekrvaealgfedfkaeaalvnlYapgatlslHiDrsEeDlrlPllslslGldaif 138
                  + P +P+ l d++   v + +   +++++  l+n Ya g+ +  H D     +++    lslG +ai 
  MMETSP1174-20130828|10998_1  43 PEP-LPPWLVDICTALVDAGVFPSEVRPNHVLINEYANGEGILPHSDGPMYFPKT--ATLSLGGSAIM 107
                  345.9********98898888889*****************99999865444443..35667777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 838.77
//
Query:       MMETSP1174-20130828|10995_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   18.1   0.2     0.0042   15.1   0.0    2.2  2  TIGR01068 thioredoxin: thioredoxin
      0.004   14.6   0.1     0.0054   14.2   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-06    0.0042      10      52 ..      23      66 ..      14      79 .. 0.74
   2 ?    1.0   0.0     0.051   1.1e+02      62      73 ..     127     138 ..      82     156 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-06
    TIGR01068 10 vassdklvlvDfwAeWCgpCkmlaPvleelakele..ekvkvvKl 52
                 + ss k+ ++Dfw + C  C +    l+e+a+e    +++ ++ +
  MMETSP1174-20130828|10995_1 23 L-SSGKPTVIDFWTTRCQRCPAALTKLNEFAEEWCkgHQAVFLSI 66
                 3.44579***********************999641134445444 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.051
    TIGR01068  62 akygirsiPtll 73 
                  ++++i+s+P ll
  MMETSP1174-20130828|10995_1 127 QQVSIQSLPGLL 138
                  577788888776 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.6e-06    0.0054      46      91 ..       9      54 ..       2      78 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.6e-06
    TIGR00385 46 aelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake 91
                   l+e +  +t  +l  gk++++++w++ C+ C a    L+e+a+e
  MMETSP1174-20130828|10995_1  9 RLLDEASTPTTLSTLSSGKPTVIDFWTTRCQRCPAALTKLNEFAEE 54
                 5566777777778999**************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 478.09
//
Query:       MMETSP1174-20130828|10993_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.81
# Mc/sec: 842.45
//
Query:       MMETSP1174-20130828|11000_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 225.85
//
Query:       MMETSP1174-20130828|10999_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   50.9   0.0    1.7e-14   50.5   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.7e-12   43.4   0.0    2.4e-08   31.5   0.0    2.9  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    0.00087   16.6   0.0     0.0018   15.6   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.014   13.0   0.0      0.027   12.1   0.0    1.4  1  TIGR03697 NtcA_cyano: global nitrogen regulator NtcA


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.7e-17   1.7e-14       2     193 ..     474     653 ..     473     695 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 1.7e-17
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa...dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGas 193
                  tg+  a+k l ++++  +++ +    e ++  + +hP i  L    +     l    ey +G  l  vL +   dG +p+a      + vL al    ++ + +RDLkP+n++v a +     k++DFG +    g              v G+P+Y aPe L g     + D +a+G+++ eCL G     G  
  MMETSP1174-20130828|10999_1 474 TGDVFALKTLHKKEVVMHKQQQNVMNEKNIMIECNHPFILSLYQTYKDAY-CLHMLLEYCNGGELFTVLHTrtrDG-VPPASAKFYCAGVLLALGYLLRKNISYRDLKPENMLVDALG---YVKIIDFGFAKTIKGSTR----------TVCGTPEYMAPEILLGRGYNIQVDWWAFGVLLYECLAGYSPFAGSN 653
                  778889******99999999999*******************99887666.99**********9999998633245.6777888999**************************98777...589*****9876665433..........589***********************************98777765 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.4e-11   2.4e-08     144     249 ..      80     182 ..      70     215 .. 0.82
   2 !    7.6   0.0   0.00046      0.47      13      96 ..     222     298 ..     211     310 .. 0.77
   3 ?   -0.9   0.0      0.17   1.7e+02      15      97 ..     345     419 ..     336     444 .. 0.56

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.4e-11
    TIGR03896 144 lilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLq 249
                  l+l  l e++v+ + k    ++++agt +i+ ge  d +Yi+ +G  e+  ++ +as  v s   G+ +Gel++l      +atv a e++ +  i+++++++ + 
  MMETSP1174-20130828|10999_1  80 LLLNSLTETEVDIFIKCSLSQEVPAGTTIINHGEDGDYFYIVETGLFEVF-TP-NASAAVCSPGPGDTFGELAILCNAPR-AATVTAKENSLVWKIERDQFRNSMA 182
                  56788999999999999999999999999999999999999999998875.33.46778999999999999998865444.8999999999999999998887664 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00046
    TIGR03896  13 iaaettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLa 96 
                   +a++t+i +G +   ++++ +G++  +    e+ +l       +L +    Ge sl+ +    at+ a  +  l+ + +e+++
  MMETSP1174-20130828|10999_1 222 YKAGATIITKGDTGSIFYMIAEGTVQCRDLGTEGVTL-------DLGVNAYFGERSLVTNDVRSATVVALTDVTLMALAREDFE 298
                  5678889999999999999999988766555555555.......5667788999999999999999999999999988888866 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.17
    TIGR03896  15 aettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaa 97 
                  +++ ++++G+    +fi+++G +   ik ++     + +e+++    e+  e  l  +r+   t+ a  + + +++ +++La 
  MMETSP1174-20130828|10999_1 345 DGANVVKQGTPCTSFFIVKEGQVQC-IKNNQPT---EILEVGK----EFNLEAMLDVDRLCEFTVVAIGDVKCFELHRSDLAQ 419
                  5666778888888888888887653.3222211...1222222....233344444455555555555555555555555554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-06    0.0018      73     138 ..     526     601 ..     485     609 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.7e-06
    TIGR03724  73 kivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  ++++ey +g +l ++l++++           ++  v  ++g l +++i + Dl ++N++v+  + + +iDfG +k+
  MMETSP1174-20130828|10999_1 526 HMLLEYCNGGELFTVLHTRTRdgvppasakFYCAGVLLALGYLLRKNISYRDLKPENMLVDaLGYVKIIDFGFAKT 601
                  566788888888888887666777887765677778888999******************6257788******997 PP

>> TIGR03697  NtcA_cyano: global nitrogen regulator NtcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05     0.027       1      82 [.     225     301 ..     225     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.6e-05
    TIGR03697   1 gktiffpgdpaekvyllkkgavklsrvyeageeitvallrensvfgvlslitgkrsdrfyhavaftrvellavpieqvekal 82 
                  g ti+  gd     y++  g+v+       g e     l  n+ fg  sl+t +   r    va+t+v l+a++ e+ ek l
  MMETSP1174-20130828|10999_1 225 GATIITKGDTGSIFYMIAEGTVQCRD---LGTEGVTLDLGVNAYFGERSLVTND--VRSATVVALTDVTLMALAREDFEKLL 301
                  7899******************9765...555544445789**********976..466789**************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.60
# Mc/sec: 1682.86
//
Query:       MMETSP1174-20130828|11004_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|11003_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 933.03
//
Query:       MMETSP1174-20130828|11005_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|11007_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|11008_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|11009_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   60.4   0.0    2.5e-17   59.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.1e-07   27.2   0.0    9.3e-07   26.3   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0085   12.5   0.0      0.015   11.7   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.8e-20   2.5e-17      58     159 ..     110     211 ..      93     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.8e-20
    TIGR03903  58 FeyveGrtlrevLa...adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPe 159
                   +y++G  l + +a   ++Ga   a+ +rLm q  Da+a+ hd+Gv hRD+kP+ni++ +a +     + DFG ++L + +++  +a    ++e  GsP Y+aPe
  MMETSP1174-20130828|11009_1 110 TDYIDGGDLMQYVAessQKGAFHEAHAARLMRQLFDAVAHCHDRGVCHRDIKPDNILINKAKD--AITLCDFGSATLWSPARAHRAADPPMKGE-FGSPFYTAPE 211
                  57888888888776322579**************************************98765..56799*************88888888888.6********9 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   6.8e-10   9.3e-07      75     137 ..     118     183 ..      93     197 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6.8e-10
    TIGR03724  75 vmeyiegkklkdlleekel.ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgk 137
                  +m+y+ ++  k +++e +  +l++++ ++v+++H+ g++h D+ + Ni+++  +d ++l DfG + 
  MMETSP1174-20130828|11009_1 118 LMQYVAESSQKGAFHEAHAaRLMRQLFDAVAHCHDRGVCHRDIKPDNILINkaKDAITLCDFGSAT 183
                  477777777777666655589*****************************6458899*****9765 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   1.1e-05     0.015     234     301 ..     108     180 ..     100     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
    TIGR01982 234 ltlewidgipvsd.leklkeaGldlkalaenlvesflkqv...lrdgfFHaDlHpGNilvakd.gkiialDfG 301
                  l +++idg  + + +++  ++G   +a a++l++ ++  v    + g+ H D+ p Nil++k   +i++ DfG
  MMETSP1174-20130828|11009_1 108 LLTDYIDGGDLMQyVAESSQKGAFHEAHAARLMRQLFDAVahcHDRGVCHRDIKPDNILINKAkDAITLCDFG 180
                  446999998876526778899*99999*******999877222568**************9984678889**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.70
# Mc/sec: 931.47
//
Query:       MMETSP1174-20130828|11013_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 218.72
//
Query:       MMETSP1174-20130828|11014_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   35.6   0.0    2.1e-09   35.4   0.0    1.0  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
    0.00044   17.6   0.0    0.00045   17.6   0.0    1.1  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
     0.0006   17.5   0.0    0.00068   17.4   0.0    1.1  1  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2


Domain annotation for each model (and alignments):
>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.5e-12   2.1e-09      82     152 ..      22      95 ..       3     102 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.5e-12
    TIGR00050  82 sralkkvlltPreladkllakkg...kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYe 152
                  +  lkk+  +Pr +a ++ +++    ++a + G E++GL   +l  +d lv++p+++ ++s+ ++ Av +++Ye
  MMETSP1174-20130828|11014_1  22 DIVLKKQSYSPRSCATTMGDVAKrnqRSAFMLGPEQTGLEIADLVNADALVHVPAHPAFASVGIASAVTILAYE 95 
                  5578999999****9987554444459**********************************************9 PP

>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-07   0.00045     183     235 ..      43      95 ..      14     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.3e-07
    TIGR00186 183 kkktkklaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgillfe 235
                  +k +++ a ++G E+ G++     ++D l+++p    + S  +  A+ il +e
  MMETSP1174-20130828|11014_1  43 AKRNQRSAFMLGPEQTGLEIADLVNADALVHVPAHPAFASVGIASAVTILAYE 95 
                  4567799******************************************9997 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     5e-07   0.00068      92     145 ..      45      97 ..      15     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5e-07
    TIGR00185  92 ykdtdylvfGqetkGlPkslldel.aeqklriPlteevrslnlsnavavvlyeal 145
                   +++  +++G+e +Gl   + d + a+  + +P      s+ +++av+++ ye +
  MMETSP1174-20130828|11014_1  45 RNQRSAFMLGPEQTGLE--IADLVnADALVHVPAHPAFASVGIASAVTILAYESW 97 
                  3455589*********6..5555546899************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 466.36
//
Query:       MMETSP1174-20130828|11021_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|11016_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-46  154.8   0.0    7.2e-46  154.6   0.0    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    2.5e-45  152.7   0.0    3.1e-45  152.3   0.0    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
      3e-44  149.2   0.0    3.8e-44  148.9   0.0    1.0  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
      3e-43  146.2   0.0    3.7e-43  145.8   0.0    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
      3e-40  136.3   0.0    4.8e-40  135.6   0.0    1.3  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    1.1e-37  127.6   0.1    1.4e-37  127.3   0.1    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    2.2e-37  126.7   0.2    2.9e-37  126.3   0.1    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    5.7e-33  112.2   0.1    7.6e-33  111.8   0.1    1.2  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    2.7e-30  103.4   0.0    3.4e-30  103.1   0.0    1.1  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
      1e-25   88.2   0.0    1.3e-25   87.8   0.0    1.0  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    4.6e-25   85.7   0.0    6.6e-25   85.2   0.0    1.2  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    5.1e-23   79.2   0.1    6.9e-23   78.7   0.0    1.1  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    6.2e-07   25.8   0.1    1.4e-06   24.6   0.0    1.6  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   2.3e-48   7.2e-46       3     456 ..      40     504 ..      38     528 .. 0.79

  Alignments for each domain:
  == domain 1    score: 154.6 bits;  conditional E-value: 2.3e-48
    TIGR02299   3 hlidGelvasesgetfetlsPadn......evlasva...kGgaedvdkavkaakkafk.kwaelkaaerkklllkladliekhadeiavl...e.sldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvd.eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrls..lelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgr..alrvaaale..aGmiyvnsenvrdlr.tPfGGvkasGi 456
                   +i+Ge v+s +get e  sP+ +      +v+++ +   + +a +v k+++aa +a + +w +++  er   +  + + + +  ++i  +   e + +tG a++   +++  a +  +   + ++    + ++++         r pvGv  +++P+n P+      + P+l +Gn vvlk      l   +l+  +    lP G +n+v G G+ +  a+++   v +++f+G +++ ++++ +  +++ rl+   +l Gk+  iv+ dadl+ a    +    s+nG+rcta   ++v++s+++ f+ kl + + a++vG P +e+  + Pl +++  a + + +  a ++Ga ++   +      + ++s G   +P+++  +  +mr+ +ee fGPv+ v +f d +++ ++  d   G  + ++t+d     a  + + l    G + +n +  r     Pf G ++s +
  MMETSP1174-20130828|11016_1  40 TFINGE-VKSWEGETIEITSPIVDpesgkrTVIGRLSvleEDDAVEVVKTASAAWDAGQgAWPQMPVRERIAAMEAVLEELTRIREDIVQVlmwEiCKNTGDAYKEFDRTMDYARASIAALKESIK---TDDAWKTVsGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLV-HILTMNAFAKHLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIGA-HPHVHRLKifSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSDH-----SGGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPTGlvAAPLVDLLStiVGRVNLNVQCGRSPDvLPFSGRRSSAM 504
                  589998.578888999988886431111114455443111445566777777777777789*********99999999888887777766512223677777777777777766666665555554...4444554414455555789**************999999**************99999886.56777777789********************************998887776654.455555441169**************************************************************************************************998732.....35689**********************************************************995421133344433322466677777766643147777776665 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.0   9.8e-48   3.1e-45      14     456 ..      57     509 ..      41     518 .. 0.79

  Alignments for each domain:
  == domain 1    score: 152.3 bits;  conditional E-value: 9.8e-48
    TIGR01804  14 vleiinPanq..eviaevaeatred....vekaiaaarraqgewaalsalergrilrriaellrkkneelakletl....dtGkaleetlvadiddiadvleffaGladkleGeiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkima.aaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadle..raervaerlk..aGtvwin.dynlspaevPfGGykqsGiGreng 456
                  +  i+ P ++   vi +++   ++d    v+ a aa   +qg w ++   er   + ++ e l + +e++ ++       +tG a++e     +d +  +    a l ++ + +    + +   a++rr p+Gv   ++++nyPl        P+l +Gn +vlk   +  l  +  ++++    lP+G +n v G+g+ +  +++    v+ + + Gg ++  k++  +   +  k+  +l Gk+  iv+ dadl++a+ q  l++    Gq c++   ++v++++k++f+akl + + ++k+G +++e+  + Pl   ++ + ++  i+ + e+ga ++   +     ++  G  + P+++  vt +m++ +ee fGPv+ v +f++ ++v +   d+  G  a++ft+d +   a  +++ l   +G v +n + + sp  +Pf G + s +G    
  MMETSP1174-20130828|11016_1  57 TSPIVDPESGkrTVIGRLSVLEEDDavevVKTASAAWDAGQGAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWeickNTGDAYKEF-DRTMDYARAS---IAALKESIKTDDAWKTVSgVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAK-HLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIGaHPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSDHS--GGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPTglVAAPLVDLLStiVGRVNLNvQCGRSPDVLPFSGRRSSAMGTMSV 509
                  33444444432146666665555550000445555555667******************999999999888875541112567777776.3333333333...3444444333333222222689***********************************************99999998875.6**********************************999988887244455567888***************************************************************************************************9976554..556789**********************************************************762235666776652257777773456778888888888888886555 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   1.2e-46   3.8e-44      40     463 ..      88     517 ..      42     524 .. 0.84

  Alignments for each domain:
  == domain 1    score: 148.9 bits;  conditional E-value: 1.2e-46
    TIGR03250  40 dvrralevaaayrskltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGg.vaiGkliaakagykravl..elGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlll.....gnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitk..liaele..vGtvnvwevpGyrleltpfGGikdsGlGykeGvqealksft 463
                   + +a++  +   +++   er++ +e+  e l++ +e+i +++  e      d+  e +r +d  + a+  +l++  ++     t +g + ++   r p+ gv   ++pfn+pln++   ++p++   n vvlk      l  +l ++ +    lp   ++ v G+ r  + +++    vd++ f Gg  a  kli a+ + +r  +  +l G +  ivl dadld aa+    G++   Gqrcta+k i+v++sv drf+  l ++  alk+G p +++v +  + + +  + +e+ + +av++Ga ++      g+   G+l++p ++  v+p+++l +ee fGpv+pv +f+d  +   +   +  g  +++ t +   ++   l+  l+  vG vn+    G   ++ pf G + s +G    v eal+ f+
  MMETSP1174-20130828|11016_1  88 TASAAWDAGQGAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYAR-ASIAALKESIKTDDAWKTVSGVRARI--RRGPV-GVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFA-KHLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGsNAADKLIGAHPHVHRLKIfsQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNsdhsgGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPTGLVAapLVDLLStiVGRVNLNVQCGRSPDVLPFSGRRSSAMGTM-SVSEALRGFS 517
                  2333444445566888999********************************************766.56678899999999999999999998..57776.7999*****************************99988888777777665.67*******************************97615789***99999887543238***************************************************************************************************972222233456899********************************9999888888888888888887765554312454443349***************************85.7999999996 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.0   1.2e-45   3.7e-43       3     436 ..      62     508 ..      60     518 .. 0.83

  Alignments for each domain:
  == domain 1    score: 145.8 bits;  conditional E-value: 1.2e-45
    TIGR01780   3 nPatGek..igkvpevsveeveeaieaaeealk....tykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleW.faeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvk.PaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillk.qsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgG.dkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirv..aeele..vGlvgvntgl.isevvipfGGvkesGlGreg 436
                  +P +G++  ig+++    +++ e +++a  a++    ++ ++ ++er   ++ + e +   ++d++++l  e  k   +a  e   +  y +   a+  + +  d +  + s  r  + + PvGv  +++P+n+P   +     ++l  G  vv+k Pa    +  l++  +a++  +P+g++n v +s++ +   +    lv  + f G ++    l+  +      k+  +l G+   iv +dadld a ++         gq c     ++vh+sv+d+f++kl +++  lkvG   +e+v++ pl + k  + +e+ i+dave+Ga vv    +  + +gg +f P+++  vt +m++ +ee fGP+ pv +f+d+ +v ++  d+  G  a +f+ d + ++     + l   vG v +n +   s  v pf G + s +G  +
  MMETSP1174-20130828|11016_1  62 DPESGKRtvIGRLSVLEEDDAVEVVKTASAAWDagqgAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYARAsIAALKESIKTDDAWKTVSGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKlPAVGGLVHILTMNAFAKH--LPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIGaHPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSDhSGGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPTGLVAAplVDLLStiVGRVNLNVQCgRSPDVLPFSGRRSSAMGTMS 508
                  666666422444443333333333333333332111279999*****************************************999999987525666777888888888999999999****************98888889999****9999986898888889999988876..9***********99999999999********9877777666650444344456669*********************999888999**********************************************************************87723356689**********************************************************99877541134343225666677655256678999999999999765 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   1.5e-42   4.8e-40      39     447 ..      51     460 ..      39     506 .. 0.85

  Alignments for each domain:
  == domain 1    score: 135.6 bits;  conditional E-value: 1.5e-42
    TIGR01237  39 Geeveteakidsinp.adksevvGkvakasvedaeqalqaakkafe....ewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremik.lakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlg...gedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisn 447
                  Ge++e  + i  ++p + k  v+G+ +    +da + +++a +a++    +w +++v+er a +    + l r r ++  +l+ e+ k+  +a  e   ++d+ +     + + ++ ++  +++ G + r+   p Gv ++++p+n+pl  +  m + +++ Gn+vvlk     +++    ++ + +  lp+G ++fv G+G++    ++    + ++ f G  +   ++        p  + lk +  +l Gk+  iv  +ad++ a++  + +a  ++Gq+c+a+  ++v+++v d+++ ++ +   +lkvg + e +v ++p+ + k  + ++  i  + ++g  v+      ++ s G    p+++  v +  rl +ee fGpv+ v   +d  +  ++  ++  g   ++++ 
  MMETSP1174-20130828|11016_1  51 GETIEITSPI--VDPeSGKRTVIGRLSVLEEDDAVEVVKTASAAWDagqgAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYARASIAALKEsIKTDDAWKTVSGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAF-AKHLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIG----AHPHVHRLK-IFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNsdhSGGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTS 460
                  4555544444..344245778*******************99999744446****************************************************998665554414566778899*********************************************8888888877666665.567****************9999999********997666555544....345555554.789*******************************************************************************99999988888887777766665344445678899****************************999999999888777666666666665 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.1   4.4e-40   1.4e-37      26     421 ..      70     461 ..      39     514 .. 0.83

  Alignments for each domain:
  == domain 1    score: 127.3 bits;  conditional E-value: 4.4e-40
    TIGR03216  26 viae...vaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvf.advvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvk.evslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwted 421
                  vi++   + e ++ ev ++ +aa +a +g w ++ v+er++ +++v +e++r  ++ ++  + +  k +  a k +  r++   r   a + ++++t+    +t  G +a     r p+Gv  +++p+n pl  +   + p+l +Gn+vv+k          l  +   +  +p+G  n v G G  + G+ + r   vd + f G +++ + ++ a  +  + ++  +l Gkn +iv+ dadld a + ++  a +  Gq c + + + v+  + drf+a+l++++ +lk+G+p +e++ + pl   ++ + + +  + ave+Ga+vv      + g + ++G+   p++   ++ s r  +ee fGpv  va f    +v +   d+  G  a+++t+d
  MMETSP1174-20130828|11016_1  70 VIGRlsvLEEDDAVEVVKTASAAWDAGQGAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYK-EFDRTMDYARASiAALKESIKTDD-AWKTVSGVRA--RIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMN-AFAKHLPRGSINFVSGSGRVTCGAIM-RTGLVDMLGFIGGSNAADKLIGAHPHVHRlKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSD---HSGGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSD 461
                  455411145666778888888999999******************************99987777776655544.445555555543033444444443.4455566443..56799***********************************76655555444444.44567******************976.6778*****************99988776456679*****************************************************************************999999999**************875...67999***********************************************************98 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.1   9.2e-40   2.9e-37      14     457 ..      50     508 ..      39     520 .. 0.82

  Alignments for each domain:
  == domain 1    score: 126.3 bits;  conditional E-value: 9.2e-40
    TIGR01722  14 sdkyipvsnpa....tn..evlakvaeasaee....vdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevveha.csvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvG.svavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevll.dGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsd..Gaaarkfq..heievGqvGvnvpipvplpffsftGwkdslfGdlh 457
                   ++ i+++ p+    ++   v++++++   ++    v++a a+      aw + +v er   +    + l   r++i ++++ e  k   da  +  r ++    +  +++  ++ +   +    v     r p+Gv   ++pfn+p      m+  ++  Gn  vlk      +  +   + + +  +p G +n v G ++++   ++    v  + f+G s+a+ + i  +   h  ++ +    kn ++vlpdad++ a+++    a    Gqrc ai  +++  ++ ++++ ++ +++  ++vg   + +  + pl ++++ + ++ lia+++++Ga+v+  d  g ++ G   G    ++l+  v p+m+ ++ee fGpv+ v+      +   ++ +s  G+ +aiftsd  G  a      +   vG+v +nv       +  f+G ++s +G + 
  MMETSP1174-20130828|11016_1  50 EGETIEITSPIvdpeSGkrTVIGRLSVLEEDDavevVKTASAAWDAGQGAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYARASiAALKESIKTDDAWKTVSGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAK-HLPRGSINFVSGsGRVTCGAIMRTGLVDMLGFIGgSNAADKLIGAHPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVkDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNsDHSGGQISG---GSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDptGLVAAPLVdlLSTIVGRVNLNVQCGRSPDVLPFSGRRSSAMGTMS 508
                  344444444431111331146677666544441111333444444445679999******9999999999999***************************9887651567788888888888899999999****************9988889888999********888777888877777765.69********99458999**************96377778889999999999999************************99999***********99999999789**************9777777889*************************9962666777766...99*****************************98888999******************844444444431134559********999999999*****99999765 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.1   2.4e-35   7.6e-33       6     413 ..      42     461 ..      38     507 .. 0.75

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 2.4e-35
    TIGR03374   6 iegklvagegekq....avynpatgev..i...leiaeas.aeqvdaavraadaafaewgqttpkaraelllkladai....eenaevfaklesrncgkplhavlndeipaivdvfrff.agaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvslt.gsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplssl...ahlerv.saaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkd 413
                  i+g++ + ege      ++ +p +g+   i     + e + +e v++a  a da    w q   + r   +  + + +    e+  +v+     +n g  +      e    +d  r   a     ++   a + + g  + irr pvgv   +ap+nypl      l p+l  gn+vvlk   +  l  +   +  +  lp g +n + g g+    a+     v m+ +  gs a+ + i ah      +   +l gk   iv+ dad+d  ++          gq cta   i +  ++ d ++ kl + + +lk+g p +e+  + pl      a le + ++ave+  +   ++    g +  g g  f+p+l+        + ++e fgpv+ +++f d  qv +   ds  g  ++++t d
  MMETSP1174-20130828|11016_1  42 INGEVKSWEGETIeitsPIVDPESGKRtvIgrlSVLEEDDaVEVVKTASAAWDAGQGAWPQMPVRERIAAMEAVLEELtrirEDIVQVLMWEICKNTGDAY-----KEFDRTMDYARASiAALKESIKTDDAWKTVSGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAKHLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIgGSNAADKLIGAHPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPkkpAYLEALiADAVEQGAS--VVNSDHSGGQISG-GSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSD 461
                  67777777777651111344555555311211012222221344555555566666677777766665544444333300003334444444445555554.....46677778777651444568889999999**************************999999**************99999998887777777889*************9999999999****9976156777777778877666677889****************88877654445556**********************************************7651114555431345554433..3344445556665.7789***************************************************998 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   1.1e-32   3.4e-30       2     411 ..      41     463 ..      40     510 .. 0.79

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 1.1e-32
    TIGR03240   2 fidGkwraGqGeslesldpv....tq..evlwqgkaasaaqvekavkaarkafp....awarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayee..rtGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGa.retGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvgk.ydaepqpflGavisekaakellaaqekllalggksllelkqlee...eaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddre 411
                  fi+G+ ++ +Ge++e ++p+    ++   v+ + +  ++++  + vk+a +a+     aw ++++ eria ++   e l++ +e++ +v+  e  k + +a  e    +     si a++e  +t +  ++++  +a +r  p Gv  ++ p+n+p       ++p+ll Gn vv+k   +  lv   t+++++k  lp G +n+v G+ r t  a++ +  +d l f G sn+  +l           +  +l G n  +v   +d+d a+++    a    Gqrct  + ++v+d +  d+++++l +   +l+vg  ++++    + ++   k     l+a    + + g+s+++ ++      + +l+tp+++  vt    + +ee fgp++ v  ++d ++  ++  ++  G  a + + d +
  MMETSP1174-20130828|11016_1  41 FINGEVKSWEGETIEITSPIvdpeSGkrTVIGRLSVLEEDDAVEVVKTASAAWDagqgAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYARASIAALKEsiKTDDAWKTVSGVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAK-HLPRGSINFVSGSgRVTCGAIMRTGLVDMLGFIGGSNAADKLIGAHPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHD-SVKDRFMAKLHDNIVALKVGMpWEENV--AITPLPEPKKPA-YLEALIADAVEQGASVVNSDHSGGqisGGSLFTPALVyPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPT 463
                  99999999999999887776222233113444555556666666666666666422237************************************************************9844677888999************************************************************988.6**********95378999*****************999888665555444445568899********************************887777765.56799**************97355544..356665555444.5666666666666777877776541236789***988469**9**********************99999999988888877765543 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   4.1e-28   1.3e-25      35     440 ..      41     446 ..      28     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 4.1e-28
    TIGR01236  35 viggkevvksnelievvaP.....adhqaklakltnateedvkkaveaaldakk....eWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkya.relleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPa.lmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeelei..laGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevv 440
                   i+g+    ++e+ie+++P     + + +++++l   +e+d+ + v++a +a+      W ++p+++r a +    + l ++ re+i  + m +  k++ +a  +     +d+ r  ++   +++      ++++g+  ++   +  G    ++Pfn+       +  P+ lmGnvvv k   +  l   l+m+ + +  lP+g infv++ g +   +++    +  l f G  +   +l    + ++++ + f ++     Gk++ +v p ad+++++     ga  y+Gq+c+a+  + v +s+ ++++++l ++   +kvg + + ++ ++++ + k+ a +  +i +a ++ +++      GG++  s G + +P++v    P+ +l++ee fGPv+ v  + d+   ++ +v+
  MMETSP1174-20130828|11016_1  41 FINGEVKSWEGETIEITSPivdpeSGKRTVIGRLSVLEEDDAVEVVKTASAAWDagqgAWPQMPVRERIAAMEAVLEEL-TRIREDIVQVLMWEICKNTGDAYKE-FDRTMDYARASIAALkESIKTDDAWKTVSGVRARIRR-GPVGVNLMLAPFNYPLNEMYAMLIPSlLMGNVVVLKLPAVGGLVHILTMNAFAK-HLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIGA-HPHVHRLKIFSQL----EGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNsdHSGGQI--SGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTT--QVYDVL 446
                  57888777788888888873322335778999999999999999999998887533337*********99876665555.89*****************999555.5599*****9987651567777778899999999985.55699999*****9766655555565279********************99865.7****************999999999999*********9999886.6778888877776....579**************************************************************999999******************9999876654311456665..889999*****************************9984..455554 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   2.1e-27   6.6e-25      35     445 ..      82     483 ..      43     489 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 2.1e-27
    TIGR02278  35 GldlaaavayarevGgkalraltfheraaklkalakylserkeelya.laattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvgdlldhlds...rdvvaftGsaataekl.rahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld...GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpe..varqfilglaafhGrlhl 445
                   +++ + +  a + G+ a  ++ ++er a + a+ + l+  +e++ + l+ +   +  d+  + d ++   ++ as +     ++++ ++d  +++s     +   i     Gv + +  fn+P   +   l P++l G  +++k  +  + v   ++ +   ++ lP+G++++++Gs +    ++      d++ f G  ++a+kl  ahp v +  i  + e    n  ++ +d+      +d+ +k+     t+  Gq+ctai+ ++v  +  +  +  l++ + ++k+G P ee+v++ pl + ++ + +ea +a  +++ga v+  d +  +   G+ f+P+l++   p+   + + e fGPv+ + ++ d+++   + +       a+++t+dp+  va  ++  l++ +Gr++l
  MMETSP1174-20130828|11016_1  82 AVEVVKTASAAWDAGQGAWPQMPVRERIAAMEAVLEELTRIREDIVQvLMWEICKNTGDAYKEFDRTMD--YARASIAAL---KESIKTDDAWKTVS----GVRARIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVH--ILTMNAFAKHLPRGSINFVSGSGRVTCGAIMRtglVDMLGFIGGSNAADKLiGAHPHVHRLKIFSQLEGK--NLGIVLPDAD-----LDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSDHSGGQisgGSLFTPALVYPVTPS-MRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNGQQAAIFTSDPTglVAAPLVDLLSTIVGRVNL 483
                  556666677777888888888888888888888888888877776652455667777777777776654..444444443...45566666665544....45556777788***************************988888665556654..3444556789************988777765411169999998888888773699999998887777766..5555556655.....99***********************************************************************************9988766555679*******9988886.578999*******************999999888999******9754788888888889999875 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.2e-25   6.9e-23      52     417 ..      57     438 ..      36     468 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 2.2e-25
    TIGR01238  52 aqpvknpad.rkdivGqvseadaaevqeavdsavaaf....aewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka.............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfeld.dldelkkevfGpvlhvvryka 417
                  + p+++p   ++ ++G++s  +++++ e v++a aa       w  ++ +er a +e++ + l +   ++v++l+ e  k   +a +e   ++d+ r      +++++ + a               +G+ + ++p+n+pl  +   +  +l  Gn v+ k      l+   +++ + +  +p g+i+++ G G     a+     +  + f G ++ a ++  a  + +  +  + ++  G+n  iv   a  +   +     a    Gqrc+a+++++v + v dr +  ++  +  lkvg p + +  + p+ + +    l+a i    +++ +v +  +   + s  + f +  ++ +  ++  +++e+fGpv+ v  +  
  MMETSP1174-20130828|11016_1  57 TSPIVDPESgKRTVIGRLSVLEEDDAVEVVKTASAAWdagqGAWPQMPVRERIAAMEAVLEELTRIREDIVQVLMWEICKNTGDAYKEFDRTMDYARASIAALKESIKTDDAWKtvsgvrarirrgpVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAK-HLPRGSINFVSGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIGA--HPHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMVHDSVKDRFMAKLHDNIVALKVGMPWEENVAITPLPEPKKPAYLEALIADAVEQGASVVNSDHSGGQISGGSLFTPALVYPVTpSMRLFNEEQFGPVIPVATFTD 438
                  579999975377899**99999999999998887775222258******************************************************999999998877654445999******9999999*****************************9888899999999888765.69*************9999999999*****9*9999999887654..44555667999***********99999999999999*****************************************************************999999999988877775555555565556666653788899********9998864 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.6e-09   1.4e-06     188     470 ..     178     452 ..      76     486 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.6e-09
    TIGR02288 188 rfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewle.q..narqaqvytekaGvntviiestddlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkllgddaravallGaiqsed.tvariaearalGevlldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarrvvre 470
                  r +  p G+ l+++   +p  + y  l  sl  Gn v++k      l   lt++   + l    +  n+v    + ++  ++ ++     v ++ f G++   + l+ +  + ++ ++++++ G n  i+    dl   ++  ++  + y Gq ct+ + i+v +d ++    +k +d+++a     + ++  ++++a+  l   ++++   a ia+a + G  +++s + +  +  +  + tp l+   +     + ee+fGp+  v +  d+ +  +++r++ + 
  MMETSP1174-20130828|11016_1 178 RIRRGPVGVNLMLAPFNYPLNEMYAMLIPSLLMGNVVVLKLPAVGGLVHILTMNAFAKHLPRGSI--NFV----SGSGRVTCGAIMRTGLVDMLGFIGGSNAADKLIgAhpHVHRLKIFSQLEGKNLGIVLPDADLDVAAKQCTLGATSYNGQRCTAIKLIMV-HDSVKDRFMAKLHDNIVAL---KV-GMPWEENVAITPLPEPKKPAyLEALIADAVEQGASVVNSDH-SGGQISGGSLFTPALVYPVTPSMRLFNEEQFGPVIPVATFTDTTQVYDVLRDSWNG 452
                  55567899*******************************97776667777777665555554433..333....344666778888889999****987766666652323678999****************************************998887.799*999999999998753...22.5566777887777777777626799********99999976.5789************9999999***********9999999999998888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.17s 00:00:00.83 Elapsed: 00:00:00.63
# Mc/sec: 1148.10
//
Query:       MMETSP1174-20130828|11024_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|11023_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 842.70
//
Query:       MMETSP1174-20130828|11031_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1552.01
//
Query:       MMETSP1174-20130828|11028_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.52
# Mc/sec: 1700.63
//
Query:       MMETSP1174-20130828|11027_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-125  415.9   0.0   3.8e-125  415.7   0.0    1.0  1  TIGR03676 aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
    4.3e-07   27.4   0.1    8.2e-07   26.4   0.0    1.5  2  TIGR00111 pelota: putative translation factor pelota


Domain annotation for each model (and alignments):
>> TIGR03676  aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.7   0.0  1.9e-128  3.8e-125       2     402 ..      18     419 ..      17     420 .. 0.96

  Alignments for each domain:
  == domain 1    score: 415.7 bits;  conditional E-value: 1.9e-128
    TIGR03676   2 kyelkklleeLkkkkgrgTeLislyippdkqisdvvkqlreEysqaaNIkskqtrknVqsalesilqrLkllkkipenGlvlfaGavakgggkekmeteviePpepiktylYrcdskFylepLeemleekevyGlivldrkeatigllkGkrievlkeltstvPgKhkkGGQSarRferlieeaaheFlkkvgekaneaflplkekklkGiligGpgptKeeflegdylhhelkkkilelvdvsytdesGlrelvekaedalkelelvkekkllekflkelvkdsglaaYGeeevrkaLelgavdtllisedlekervtlkCescdyeeektvkeeeeekle..kcpkcgselevveeedlieelvelaeesgakveiistdteegeqllkaFgGiaaiLryk 402
                  ++++kkl+++L+ ++g+gT++isl ipp  qis v+k+l +Ey++a+NIks+++r +V+ a++s++qrLkl++k+p+ Glv+++G++++++gke  +   +eP +pi+t lY cd+kF++e L+e+le+++ +G+i++d + +  g+l+G + +v++++++++P+Kh +GGQSa Rf+rl+ e+ h++++kv+e a++ f++ ++ +++G++++G++++K+e+  +d+++ +l+k ++++vdvsy +e+G+++++e ++++l +++l++ekkl++k+++e+++d+g+ ++  +++ +aLelgavd+l++ e+l+  r+tl+ +s   ++ ++ ++e++++++  + p+ g elev e+ +l+e++++++++ g+++e++++ ++eg+q+ + FgGi++iLr++
  MMETSP1174-20130828|11027_1  18 MWKIKKLIKSLQLARGNGTSMISLIIPPRDQISRVSKMLSDEYGTASNIKSRVNRLSVLGAITSTQQRLKLYNKVPPFGLVIYCGTIMTDEGKERRVNIDFEPFKPINTSLYLCDNKFHTEALNELLEDDDKFGFIIMDGNGSLYGTLQGSNRDVVHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAELATQFFITDNKPNVRGLVLAGSADFKTELHTSDMFDPRLHKVVIKTVDVSYGGENGFNQAIELSAETLGSVKLIQEKKLIQKWFDEISQDTGKYCFMVKDTLNALELGAVDVLIVWENLDVDRMTLRNNSTMETNVVHLTSEQQRNESyfRGPD-GVELEVIEKVQLVEWFANNYKTFGTQLEFVTNRSQEGSQFCRGFGGIGGILRWQ 419
                  799******************************************************************************************************************************************************************************************************************************************************************************************************************************877666655555544444444325555.899*************************************************97 PP

>> TIGR00111  pelota: putative translation factor pelota
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     4e-10   8.2e-07     117     308 ..     133     335 ..      90     358 .. 0.76
   2 ?   -3.0   0.0      0.36   7.4e+02     338     351 .]     407     420 ..     394     420 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 4e-10
    TIGR00111 117 kkfqlkrlreaveaskkskvvvvvleegvaevglvrqysveekqkikssipkkk.rt........kkrdekrkefykeiakkleef......ddlktiivagPGFakkdlldflkerypelakkavl..envstggraGinevlkrgvverilaekrlakeievidelLeelakdddkvvYGedevkkaleygaievLLvaDkvlvere 308
                  +kf+ + l+e +e++ k     ++++ +    g ++ +      k  +++pkk+ r         + r ekr+++ +++a+  ++f       ++  +++ag   +k +l    ++ ++   +k v+  ++vs gg +G+n  +   + ++ l+ ++l +e ++i++  +e+++d  k ++  ++  +ale+ga++vL+v +++ v+r 
  MMETSP1174-20130828|11027_1 133 NKFHTEALNELLEDDDKFGF--IIMDGNGSLYGTLQGSNRDVVHKFSVDLPKKHgRGgqsalrfaRLRMEKRHNYVRKVAELATQFfitdnkPNVRGLVLAGSADFKTELHT--SDMFDPRLHKVVIktVDVSYGGENGFNQAIE--LSAETLGSVKLIQEKKLIQKWFDEISQDTGKYCFMVKDTLNALELGAVDVLIVWENLDVDRM 335
                  56777777777777766554..456777777777777777777777777887774335667777778889999999999887777744432236778999998888887754..333333344445412469**********995..8899*************************************************999955553 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.36
    TIGR00111 338 esLgGiaglLrfki 351
                  +  gGi g+Lr+++
  MMETSP1174-20130828|11027_1 407 RGFGGIGGILRWQV 420
                  5689*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1492.49
//
Query:       MMETSP1174-20130828|11034_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|11035_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 180.87
//
Query:       MMETSP1174-20130828|11038_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   34.9   0.0    1.4e-09   34.8   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.5e-13   1.4e-09      87     141 ..       2      58 ..       1      61 [. 0.86

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 3.5e-13
    TIGR01982  87 lLqdkvppfdl..kaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegk 141
                   Lq +vp  ++  ++++ ++e+e+g+++e +F++++  P +aASi+Q+h+A+l+ g+
  MMETSP1174-20130828|11038_1   2 TLQSDVPGHEEfdSVVKPTLEKEFGRKLEDIFEYIDPIPCGAASIGQAHRAKLKLGS 58 
                  588888876643367899***********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 276.75
//
Query:       MMETSP1174-20130828|11044_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1174-20130828|11048_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|11047_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.6   5.4     0.0056   13.6   1.2    1.7  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
      0.052   10.1   5.1       0.32    7.5   3.6    1.9  1  TIGR00898 2A0119: cation transport protein
      0.055   12.0   0.2      0.055   12.0   0.2    3.2  4  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.2   4.1e-06    0.0056     259     329 ..       5      80 ..       1      96 [. 0.84
   2 ?   -1.0   0.1      0.11   1.4e+02     119     133 ..     149     163 ..     117     166 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.1e-06
    TIGR00881 259 tlfelaglvGtllaGwlsDk.....lfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpil 329
                   ++ ++ ++G+++ G+++D       +k + ++l  + m   + sll++ +  + ++++ +  +fv+G ++ G  +
  MMETSP1174-20130828|11047_1   5 DFYWVGRIIGSIAYGYVADTwsaksGVKVTAKSLLEVSMWSTTSSLLLVLVYDTWSSYWETFPVFVVGTFICGVTM 80 
                  57999**************98777766666667777777777888888888888999**************99765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.11
    TIGR00881 119 tvvaiwnishnvgga 133
                  t+++i + ++ vgg+
  MMETSP1174-20130828|11047_1 149 TWLSIMSAGSAVGGI 163
                  677777777777776 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.6   0.00023      0.32     133     208 ..       5      95 ..       2     106 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00023
    TIGR00898 133 svvfvGvLlGslvlGqlsDrfGRkkvLlls........t.......lvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEfl 208
                    + vG ++Gs+ +G+++D++  k +  ++        +       l  +v+ + + +  ++ vf+v  +++Gv ++g+ ++   L+ E++
  MMETSP1174-20130828|11047_1   5 DFYWVGRIIGSIAYGYVADTWSAKSGVKVTaksllevsMwsttsslLLVLVYDTWSSYWETFPVFVVGTFICGVTMGGALTILPLLSHELM 95 
                  56889***************98776655441111111031111111334455555666678889999999999999998888888888876 PP

>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.5   3.5e+03      12      14 ..      50      52 ..      43      55 .. 0.42
   2 ?   -2.6   0.1       1.7   2.3e+03      21      24 ..      80      83 ..      68      88 .. 0.51
   3 ?    0.3   0.4      0.21   2.9e+02      12      23 ..     128     139 ..     126     142 .. 0.66
   4 ?   12.0   0.2     4e-05     0.055       9      33 ..     147     170 ..     146     172 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2.5
    TIGR01167 12 lll 14
                 lll
  MMETSP1174-20130828|11047_1 50 LLL 52
                 111 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
    TIGR01167 21 lgla 24
                 +g+a
  MMETSP1174-20130828|11047_1 80 MGGA 83
                 2222 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.21
    TIGR01167  12 lllllGllllgl 23 
                  ++++lG+l+l++
  MMETSP1174-20130828|11047_1 128 SAPALGILVLSG 139
                  567889966665 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 4e-05
    TIGR01167   9 snslllllGllllglaglllrkrkk 33 
                  s+++l+++ ++ ++ +g++lrk++k
  MMETSP1174-20130828|11047_1 147 SQTWLSIMSAGSAV-GGIYLRKKRK 170
                  67888888885555.5555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 722.06
//
Query:       MMETSP1174-20130828|11046_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-125  415.8   0.0     5e-125  415.6   0.0    1.0  1  TIGR02765 crypto_DASH: cryptochrome, DASH family
    1.5e-45  153.8   0.0    1.2e-44  150.8   0.0    1.9  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    3.5e-23   79.9   0.0    1.2e-21   74.8   0.0    2.5  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    1.4e-06   25.7   0.0     0.0079   13.3   0.0    2.7  3  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.6   0.0  4.9e-128    5e-125       3     389 ..      24     449 ..      22     450 .] 0.91

  Alignments for each domain:
  == domain 1    score: 415.6 bits;  conditional E-value: 4.9e-128
    TIGR02765   3 vlllfrndLRleDnellakasskee....elvpvyvfdarqikl...........savaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelkvravflteeegseeksvekkveealaklkie......eklwgstllheddlpfe..ledlPdvftqfRkkveaklkvrksleapeklpalpk..........sedeganlPtleelveaese..edersslefkGGetsalarvkeyflsks.lksYketRngllgvdystklspwLalGcvsarqihealkrYeker.gendstywvifeLlWRdyfrflalkygdklFrleGlrgkkaktkedek.......ilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnw 389
                   +++frn+LRl Dn +l  a+++++     l+pv++fd+  +             +  +  +k+ ++ra+Fl esv dL++ L+++GsdLl+  g p dv+ +l     ++av++++e++ ee ++e++v +a +k++ +        +w+ t++h+ddlp     +++P +ft +R+kve++++vr++l+ p++l++lp                a +Ptl++l+++ ++  +d + +l+f GGe +a +r++ ++++++ lk+Y+etRng+lg+dystk++pwLalGc+s+r i+++ krYe+++ + n+stywv feL+WRd+frf+ +k gd lF++eG   ++    +d +         ++w+eg+tg+plvdanmreLaatG+msnRgRqnvasflv +l+ldWr+Gae+fe lL+DyDv+snw
  MMETSP1174-20130828|11046_1  24 QVVWFRNNLRLDDNLVLLAAQKQAAsageALLPVFCFDPAWFGNeddssssgprtAPLFTSEKTSSLRATFLIESVHDLRQGLRAIGSDLLIAYGAPADVIGSL----GATAVHYQAEVTAEELKAERAVGRAGKKRGPSsssfqtYAHWDGTMYHRDDLPQGcePSAMPLTFTPWRNKVEKRAEVRAPLPPPKSLQPLPPnteldalqspHC-STAFMPTLDDLGFTGPApvQDPKGVLHFAGGEAAARERLQGWMFDRDnLKVYFETRNGMLGPDYSTKFAPWLALGCLSPRRIYAECKRYESSTgIVNKSTYWVAFELVWRDFFRFMCAKVGDELFNVEGPVPRREAIWRDPRrdpdaaaAAAAWREGRTGMPLVDANMRELAATGFMSNRGRQNVASFLVLDLQLDWRVGAEHFEALLLDYDVCSNW 449
                  689**************9999988778889***********99999******998778899***************************************9876....6899******************9999998877677777889************875578****************************999988677776543222.2334899999988766566999***********************999******************************************976268*********************************98877766666555888888899***************************************************************** PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   1.2e-47   1.2e-44       4     384 ..      25     448 ..      22     450 .] 0.76

  Alignments for each domain:
  == domain 1    score: 150.8 bits;  conditional E-value: 1.2e-47
    TIGR03556   4 lfwhrrdlrlsdnlglaaarqksa....kvvglfcldekilkadd.................iaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakavywnldvepysrkrdravaaalkekg.....iavktawdqllhspeeiltksg...kpytvytpfwknwsskkk..aepvetpkelegltea.ekeaia..klgvialptakdlgfew.......dadlilepgeaaaeakle..efvdkaieeyqeqrn.fpaldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfp.el..adg..pyrekfkefpwenne..ahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaan 384
                  ++w r +lrl+dnl l aa++++a     ++ +fc+d++ + ++d                  ++ r ++l+ ++ +l++  + +gs+lli  g p +++     +l+a+av+++ +v     k +rav +a k++g      +   +wd  +++ +++  + +    p   +tp w+n  +k+     p+  pk+l++l ++ e++a++  +  +  +pt+ dlgf+        ++ l ++ geaaa+++l+   f   +++ y e rn + + d ++++++ l +g++++r+++++++    +s +  +++s      el wr+f++++  +   el   +g  p re+  + p ++ +  a  +aw eg+tg p+vda mr+l+ tg+m nr r  vasfl+ dl ++w+ g ++f   l+d d+++n
  MMETSP1174-20130828|11046_1  25 VVWFRNNLRLDDNLVLLAAQKQAAsageALLPVFCFDPAWFGNEDdssssgprtaplftsekTSSLRATFLIESVHDLRQGLRAIGSDLLIAYGAPADVIG----SLGATAVHYQAEVTAEELKAERAVGRAGKKRGpssssFQTYAHWDGTMYHRDDLPQGCEpsaMPL-TFTP-WRNKVEKRAevRAPLPPPKSLQPLPPNtELDALQspHCSTAFMPTLDDLGFTGpapvqdpKGVLHFAGGEAAARERLQgwMFDRDNLKVYFETRNgMLGPDYSTKFAPWLALGCLSPRRIYAECKRY--ESSTGIVNKSTYWVAFELVWRDFFRFMCAKVGdELfnVEGpvPRREAIWRDPRRDPDaaAAAAAWREGRTGMPLVDANMRELAATGFMSNRGRQNVASFLVLDLQLDWRVGAEHFEALLLDYDVCSN 448
                  78************99888776542222799******987655442333222222221111156789******************************9997....579************************9998744444678889*******999976643110333.3666.7777655431268***********8752455555115677889********8622222113458899**********943466789********94567788889****************987754..3334455555555567*********988775414422233226788887888877651156789*************************************************************98 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.2e-24   1.2e-21       2     386 ..      24     447 ..      23     449 .. 0.67

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.2e-24
    TIGR02766   2 tvvwfrrdlrvednpalaa....aareg.evlpvfvwap....eeegq..........fypgrvs...rwwlkqslahldqslkslgaklvlkrsedtvaalldvvkstgatklvfnhlydpvslvrdhkvkeklaakgisvqsfnadllyepwevv.de......kgkaftsfaaywekclelpida.spllppkklvpvta...sedvs..acsv......ddlvledds.ekssnallarawspgwsnadklleefi..ekqlleysknrkkvdsasts.llspylhfgevsvrkvfq.lvrlkq...ivwanegnseaeesvelflrsiglreysrylsfnfpfsheksllahlkffpwkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadles 386
                   vvwfr +lr++dn  l a    aa +g ++lpvf + p    +e+            f   ++s     +l +s+++l q l+++g++l++        a  dv+ s gat + ++       l  +  v     ++g s  sf++   ++      d+            +f++ w++ +e   +  +pl+ppk l p++    +++++  +cs+      ddl++   +  +  + +l   ++ g   a   l+ ++   ++l  y + r+ + +   s  ++p+l +g +s r+++  + r +    iv +     + e     f+r +  +     +  + p+   +++  + +  p ++      awr+grtg plvda mrel atg++ +r r  v+sf+v  l+l w+ g  +f   lld d+ s
  MMETSP1174-20130828|11046_1  24 QVVWFRNNLRLDDNLVLLAaqkqAASAGeALLPVFCFDPawfgNEDDSsssgprtaplFTSEKTSslrATFLIESVHDLRQGLRAIGSDLLIAYG-----APADVIGSLGATAVHYQAEVTAEELKAERAVGRAGKKRGPSSSSFQTYAHWDGTMYHrDDlpqgcePSAMPLTFTP-WRNKVEKRAEVrAPLPPPKSLQPLPPnteLDALQspHCSTafmptlDDLGFTGPApVQDPKGVLH--FAGGEAAARERLQGWMfdRDNLKVYFETRNGMLGPDYStKFAPWLALGCLSPRRIYAeCKRYESstgIVNKSTYWVAFELVWRDFFRFMCAKVGDELFNVEGPVPRREAIWRDPRRDPDAAA--AAAAWREGRTGMPLVDANMRELAATGFMSNRGRQNVASFLVLDLQLDWRVGAEHFEALLLDYDVCS 447
                  69************988761222455676789***866622223443311111222223333444221357889999999999999999988655.....5569***************9999999999999999999*9999998755444332221221100002222334555.555566666655**********9986222344432246532223338888887441445555555..567777777777764422567777877766666554431579**************625555431112222222334444445566666666666666666788888888888888887665..4579**********************************************************9876 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00021      0.22      21      64 ..      21      64 ..       4      71 .. 0.84
   2 ?   -0.6   0.0      0.13   1.4e+02      70     108 ..      90     128 ..      80     160 .. 0.79
   3 !   13.3   0.0   7.7e-06    0.0079     219     281 ..     258     323 ..     239     347 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00021
    TIGR00591 21 segvvywmsrdqrvqdnwaliyaqelalkeklPlavvfclvdkf 64
                 + + v w   + r+ dn  l+ aq+ a++    l  vfc+ + +
  MMETSP1174-20130828|11046_1 21 TPTQVVWFRNNLRLDDNLVLLAAQKQAASAGEALLPVFCFDPAW 64
                 445789*********************************98765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.13
    TIGR00591  70 rhykfllkGlrevakelkeldipfhlllgsakevlpkfv 108
                   + +fl++ +++++++l++ + ++ +  g++ +v+ ++ 
  MMETSP1174-20130828|11046_1  90 LRATFLIESVHDLRQGLRAIGSDLLIAYGAPADVIGSLG 128
                  4568***********************999999987764 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 7.7e-06
    TIGR00591 219 elakpGtkaglevlee..fiskrLklfeekrndPnk.dalsnlsPylhfGqlsaqrvalevkrars 281
                    + +G++a+ e l+   f +  Lk++ e+rn     d   +++P+l +G ls++r+  e kr  s
  MMETSP1174-20130828|11046_1 258 LHFAGGEAAARERLQGwmFDRDNLKVYFETRNGMLGpDYSTKFAPWLALGCLSPRRIYAECKRYES 323
                  56789**********96566788*********9877588889****************99998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|11049_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-25   86.8   3.0    1.6e-25   86.6   2.0    1.0  1  TIGR00517 acyl_carrier: acyl carrier protein
    0.00023   19.4   0.1    0.00028   19.2   0.1    1.1  1  TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein
    0.00041   18.3   0.4    0.00054   17.9   0.3    1.2  1  TIGR01688 dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
  ------ inclusion threshold ------
      0.029   10.9   0.0      0.029   10.9   0.0    1.1  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   2.0   1.6e-28   1.6e-25       3      76 ..       5      78 ..       3      79 .. 0.96

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 1.6e-28
    TIGR00517  3 eiiekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyieer 76
                 e  e++ +++++  +vd+ kvt+d+ f+eDL +DSLD vE+vma+EeeF  eipd eA+ki ++++a++yi  +
  MMETSP1174-20130828|11049_1  5 EATERIIAVVSNFEKVDPSKVTPDSMFKEDLALDSLDAVEVVMAIEEEFALEIPDTEADKILSIKHAIEYITAH 78
                 6789*******************************************************************865 PP

>> TIGR04069  ocin_ACP_rel: peptide maturation system acyl carrier-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.7e-07   0.00028      17      61 ..      16      61 ..       5      70 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.7e-07
    TIGR04069 17 dfkkinee.lkeknllgeklglsprdLvlllldvekqFnikipeee 61
                 +f+k++ + +  ++++ e+l l   d v + +++e++F+++ip  e
  MMETSP1174-20130828|11049_1 16 NFEKVDPSkVTPDSMFKEDLALDSLDAVEVVMAIEEEFALEIPDTE 61
                 57777754155689*****************************865 PP

>> TIGR01688  dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.3   5.3e-07   0.00054       5      58 ..      11      64 ..       7      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.3e-07
    TIGR01688  5 LDvLaevaeddvvkenpDvelfeeGllDsfgtveLLLeiqnkldievpisefDr 58
                 + v+++  + d  k  pD  + e+  lDs+++ve++++i++++ +e+p +e D+
  MMETSP1174-20130828|11049_1 11 IAVVSNFEKVDPSKVTPDSMFKEDLALDSLDAVEVVMAIEEEFALEIPDTEADK 64
                 55666666667778888876667777**********************999885 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.8e-05     0.029      35      80 ..      24      69 ..       7      82 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.8e-05
    TIGR02372 35 lltadsrideetlgldsLarLdLvsavadffdLsetgve.dyllver 80
                 ++t ds    e l ldsL+ +++v a+++ f L+  ++e d++l  +
  MMETSP1174-20130828|11049_1 24 KVTPDSMFK-EDLALDSLDAVEVVMAIEEEFALEIPDTEaDKILSIK 69
                 567787765.569********************98888756776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1174-20130828|11055_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-13   47.6   0.0    1.6e-07   28.5   0.0    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    6.1e-11   39.5   0.0    9.7e-11   38.8   0.0    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
  ------ inclusion threshold ------
      0.024   11.5   0.9        1.1    6.1   0.1    2.7  3  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.6e-07   0.00049     128     220 ..      12     110 ..       5     129 .. 0.79
   2 !   28.5   0.0   1.2e-10   1.6e-07     298     350 ..     207     259 ..     202     260 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.6e-07
    TIGR02352 128 lePelseeirgavflped..aqvdprellkaLvkaleklGveii....eevevqeieargekvtavktssekvqadqvvlaaGawakellplalrpvkg 220
                  l P + +++++   +++d  aq++p+el++ L++a+ ++G+e++    e ve       +e vt+vk s e v+ d vv+  G w++   + +  pv  
  MMETSP1174-20130828|11055_1  12 LVPLVDGDLAQSSVMDQDggAQIAPKELCEKLMEAAVRMGAELRigtvEGVETSVAPDGVEAVTGVKVSGEVVETDAVVVTMGPWSSLAQDWFRMPVPI 110
                  668888899999999998446********************986222244555555567899***********************99877766666655 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.2e-10
    TIGR02352 298 twaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliekk 350
                  t+a +RP  pD +P++g+ ++ ++  +++Gh   GiL aP++++ +++li+++
  MMETSP1174-20130828|11055_1 207 TQACMRPCPPDAMPMMGKIPDIRGAFMSAGHNCWGILWAPVSGKSMSELILQG 259
                  7899**********************************************975 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   7.1e-14   9.7e-11     133     376 ..      24     275 ..      15     280 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 7.1e-14
    TIGR01377 133 glldelgGv.lyaekalralqelaealGaivrdgtkvveikrd......ellvtvktkkksyqakklvvtaGaWtskLlkklaielPlqplrinvcywrikeakeekvsqefPaflvlglap..yiyglPsleypGLikvayhhG.qqvDPderd...rekgadiedveeLkkfvkdrlpglk....eepkatelCmytktPDedfvlDlhpkyydnvvigaGfsGhGfklapvvGkiLaelamklea.eydlaafslrrfe 376
                  +++d+ gG  + +++  + l e+a+++Ga +r gt v+ ++++      e +  vk++++  +++ +vvt+G+W s       + +P+  ++ +   ++ + + e      f  f  ++     ++   P    +G +  +  +G + vDPd+     +++g    d++ ++    d ++ +     + p++t+ Cm    PD   ++   p+  +   ++aG    G   apv Gk + el ++++a  ++la+fs  rf 
  MMETSP1174-20130828|11055_1  24 SVMDQDGGAqIAPKELCEKLMEAAVRMGAELRIGT-VEGVETSvapdgvEAVTGVKVSGEVVETDAVVVTMGPWSSLAQDWFRMPVPITGIKSTSIVFKSDSPVE-----PFALFCGEDDRFgtHLEVYPRN--SGEVYLCGIGGsEYVDPDRLRsgaYPPGEVFPDEQRVQA-ATDAFSTMSkrlgGTPDITQACMRPCPPDAMPMMGKIPDI-RGAFMSAGHNCWGILWAPVSGKSMSELILQGRAeCVNLAPFSPGRFM 275
                  6888888873667777899**********999776.444444344558888999*********************99999999*************999998865.....4667777765522466666654..455555555552679**9976111455655556666554.456666665455589***********************88.999*****************************9568******99986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.044        60     142     161 ..      31      51 ..      15      99 .. 0.66
   2 ?    6.1   0.1   0.00077       1.1     298     320 ..     207     229 ..     182     233 .. 0.81
   3 ?    2.9   0.0    0.0071       9.7     345     374 ..     229     258 ..     228     274 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.044
    TIGR03197 142 ggwlsPpelvkallakaki.e 161
                  g+ ++P+el+++l+++a   +
  MMETSP1174-20130828|11055_1  31 GAQIAPKELCEKLMEAAVRmG 51 
                  5569**********9987642 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00077
    TIGR03197 298 grvgvRaasrDhLPlvGavpdae 320
                   ++ +R+  +D +P++G++pd++
  MMETSP1174-20130828|11055_1 207 TQACMRPCPPDAMPMMGKIPDIR 229
                  56789***************986 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0071
    TIGR03197 345 pgLYvllglGSRGllsapLaaelLaaqilg 374
                  +g ++++g+   G+l+ap +++ +  +il+
  MMETSP1174-20130828|11055_1 229 RGAFMSAGHNCWGILWAPVSGKSMSELILQ 258
                  689*******************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 976.72
//
Query:       MMETSP1174-20130828|11057_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 709.06
//
Query:       MMETSP1174-20130828|11062_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 278.98
//
Query:       MMETSP1174-20130828|11064_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   14.6   1.6      0.015   13.5   0.1    2.0  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.076   3.1e+02      20      32 ..      32      44 ..      25      50 .. 0.67
   2 !   13.5   0.1   3.7e-06     0.015      22      60 ..      61      98 ..      56     107 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.076
    TIGR02811 20 vgaaagavaaatg 32
                 +++a ga+++ t+
  MMETSP1174-20130828|11064_1 32 MASATGAAMTLTS 44
                 5666666666665 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.7e-06
    TIGR02811 22 aaagavaaatgrvasasaaaepsepekkkkgYreTqHir 60
                 a+ag+vaaa  +v s ++  ep+ + ++ +g +e +Hi 
  MMETSP1174-20130828|11064_1 61 ALAGSVAAAALEVCSSTELPEPKRK-HRFAGKHESKHIA 98
                 89**********************7.***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|11067_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.3   0.1    0.00068   16.8   0.0    1.3  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-07   0.00068      82     166 ..       7      90 ..       3     158 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.7e-07
    TIGR00569  82 AilyFkRFyLnnsvme.ydPkiivltcvFlAcKveef.nvsieqFvknlketrekaleevLeyEllliqsLkfsLlvhnPyrPleGF 166
                  Ai y  R yL    m+  + + + +tc+ +A+K+e+  ++ +e+ +  + +      + v+e E +++ +L+f+L        le +
  MMETSP1174-20130828|11067_1   7 AINYVDR-YLSRVKMDpLSLQLLGATCLHVASKCEDVsYIGVEDLAACADNR--YSGQDVIEMEHRVLCELNFNLACQTVLDFLETY 90 
                  5666666.56555555234456679**********9659******9988877..56689****************987654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.97
# Mc/sec: 296.64
//
Query:       MMETSP1174-20130828|11069_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-07   26.4   0.1    1.4e-06   25.7   0.0    1.3  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0052   14.0   0.0     0.0075   13.5   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     7e-10   1.4e-06       3      96 ..       3     101 ..       1     117 [. 0.78

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7e-10
    TIGR03695   3 pvlvlLHGflgskedwqalieele.ekfsvlalDLpgHGksksl.kekeakdfeeaaqellkelleklkiekviLvGYSlGG...Rialalaleaperl 96 
                  +++v++HG++gs++d++a+++ l+ ++ +++ + L    ++     +   ++ ++ a+e+++   +  + +++++vG SlGG   R al++  ++++++
  MMETSP1174-20130828|11069_1   3 HLIVFIHGLMGSSRDFHACAKLLNsPRKNSVRIYLARSCEHYFGtYDGIEAAGSRLAREIIEAARSTADFSRLSIVGHSLGGmfaRQALYVLYTMHKDF 101
                  689********************7578899*****998888744034444555667777777777888999**********966677777777776654 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.7e-06    0.0075      15      96 ..       4      89 ..       1     118 [. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.7e-06
    TIGR03611 15 vvvlssGLGGsgsywapqlevle..qefrvvvyDhrGtgrspeelae.dysiaalaadvlell.daldiekahvvGhalGgligle 96
                  +v++ GL Gs++ + +  ++l+  ++  v +y  r +++  ++ +  + + ++la+++ e+  +++d +++ +vGh+lGg+ + +
  MMETSP1174-20130828|11069_1  4 LIVFIHGLMGSSRDFHACAKLLNspRKNSVRIYLARSCEHYFGTYDGiEAAGSRLAREIIEAArSTADFSRLSIVGHSLGGMFARQ 89
                 699*********99999999997335789*********9988887652566689****998762679**************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.70
# Mc/sec: 597.72
//
Query:       MMETSP1174-20130828|11066_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1037  (0.252804); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.58u 0.20s 00:00:01.78 Elapsed: 00:00:02.25
# Mc/sec: 361.36
//
Query:       MMETSP1174-20130828|11071_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.52
# Mc/sec: 967.07
//
Query:       MMETSP1174-20130828|11074_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 696.90
//
Query:       MMETSP1174-20130828|11075_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-41  138.0   0.1      1e-40  137.4   0.1    1.2  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
      1e-40  137.7   0.0    2.5e-40  136.4   0.0    1.6  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.1     5e-44     1e-40     242     396 ..       1     161 [.       1     199 [. 0.94

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 5e-44
    TIGR03900 242 vrlktFsantteeleaalqdlrska......qlkGlVlDlRgNpGGLLeqAievsdkFl.sqGtiVstvgaserreekkakedtseeakvPvvvlVdegSASAsEiVaGalknlDRaviiGr.qtFGKGsVqvlrdatsadksaLKLtiAqYltpGDvsiqev 396
                  v l+ Fs+++++el++a+ +l ++a       l+GlVlDlRgNpGGLL  A++v+  F+ ++  iVs  g   r    + + + +++++vP++vl+++g ASA+EiV+Ga+++lD +viiG  +tFGKG Vq + +     ++aLK t+A+Y tp  + iq+v
  MMETSP1174-20130828|11075_1   1 VELSGFSQEAGAELRQAVANLDAEArvlhgtPLTGLVLDLRGNPGGLLTSAVDVASVFVpKDSDIVSAKGRGFRPVLYRSTAEPVVPSSVPLAVLINSGTASAAEIVSGAIQDLDAGVIIGAdKTFGKGLVQNVSP--LPYNTALKYTVAKYYTPSGRCIQSV 161
                  56899********************99988889**************************66789*******99988888888888************************************647************..88889******************99 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   1.2e-43   2.5e-40     156     305 ..       1     160 [.       1     164 [. 0.87
   2 ?   -2.6   0.0      0.23   4.7e+02     295     320 ..     203     229 ..     200     234 .. 0.74

  Alignments for each domain:
  == domain 1    score: 136.4 bits;  conditional E-value: 1.2e-43
    TIGR00225 156 irissFsehtaedvkkalkklekkk.......ikglilDLRgNpGGllqeavelarlflkkgk.ivsvkdrngekeveykangkqkl..klplvvlvdrgsASAsEilagAlkdnkravivG.ektfGKGtvQqvrelndgsglkvTiakyytpngksiqk 305
                  +++s+Fs+++  ++++a+ +l+ +          gl+lDLRgNpGGll++av++a  f++k+  ivs k r  +  v y+++++ ++    pl+vl++ g+ASA+Ei++gA++d    vi+G +ktfGKG+vQ+v +l  +  lk+T+akyytp+g+ iq 
  MMETSP1174-20130828|11075_1   1 VELSGFSQEAGAELRQAVANLDAEArvlhgtpLTGLVLDLRGNPGGLLTSAVDVASVFVPKDSdIVSAKGRGFRP-VLYRSTAEPVVpsSVPLAVLINSGTASAAEIVSGAIQDLDAGVIIGaDKTFGKGLVQNVSPLPYNTALKYTVAKYYTPSGRCIQS 160
                  57999**************998654232233368***************************99899998876554.46666665555459********************************679**************99*****************996 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.23
    TIGR00225 295 yytpngksiqk.kGiepdieieepdas 320
                  ++t  g+ ++   Gie+d++++ p+ s
  MMETSP1174-20130828|11075_1 203 FLTSTGRLVRDgGGIEADVKVPAPKLS 229
                  66667777665258*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1313.45
//
Query:       MMETSP1174-20130828|11079_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   13.6   0.0     0.0081   13.4   0.0    1.1  1  TIGR03849 arch_ComA: phosphosulfolactate synthase


Domain annotation for each model (and alignments):
>> TIGR03849  arch_ComA: phosphosulfolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-06    0.0081      55     100 ..       8      57 ..       2      72 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-06
    TIGR03849  55 ikvypGGtlfelaiskdkfde....ylkelkelGfeaveisdGsvelske 100
                  + +y  Gtl   a  ++ ++e     +  +++l f+av i +G  ++++e
  MMETSP1174-20130828|11079_1   8 VAAYVSGTLCKAADPQGIINEgdaaVFGVCRHLTFDAVAIDEGDNTMDEE 57 
                  789**************999855557999*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|11076_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   13.9   0.3     0.0081   13.9   0.2    1.7  2  TIGR02234 trp_oprn_chp: trp region conserved hypothetical membrane protein


Domain annotation for each model (and alignments):
>> TIGR02234  trp_oprn_chp: trp region conserved hypothetical membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2     2e-06    0.0081      70     174 ..     283     386 ..     273     413 .. 0.77
   2 ?   -3.3   0.1      0.36   1.5e+03     162     179 ..     473     490 ..     463     508 .. 0.49

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2e-06
    TIGR02234  70 RsagrrvvagLlAvaavgagllavsLltvsdataedakaArasltssvasqrasegatdlaavaaa.avvllagvlllrfgsvllamrqgaekvqaprqrrarara 174
                  R+  +r +  L+ + a+  +++ +s  t++++ a d+ aA+a    +v +++ + + t  + + a+ a    a+vl + +    + mr++  + +   qrr++ ++
  MMETSP1174-20130828|11076_1 283 RGNDLRGMEELMVMQAIRLSMSEASASTGNNSVAPDDDAAHAAVANGVQAEAPNSAPT--SCHEASeARSETAAVLEVVHDATPPQMRGQQPQRGQQPQRRQQPQR 386
                  666677778899999************************************9998877..6665552778899999999999******887665555555444333 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.36
    TIGR02234 162 vqaprqrrararaDkaet 179
                    + r r++  + D++  
  MMETSP1174-20130828|11076_1 473 EATDRHRQSENQIDQTSA 490
                  445555555444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1387.23
//
Query:       MMETSP1174-20130828|11081_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1103.05
//
Query:       MMETSP1174-20130828|11080_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 1398.52
//
Query:       MMETSP1174-20130828|11078_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1385.89
//
Query:       MMETSP1174-20130828|11089_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 194.51
//
Query:       MMETSP1174-20130828|11088_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.64
# Mc/sec: 103.12
//
Query:       MMETSP1174-20130828|11090_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.5   0.1      0.028   11.8   0.1    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D


Domain annotation for each model (and alignments):
>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-06     0.028     148     191 ..     100     143 ..      87     160 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.9e-06
    TIGR01184 148 ltreelqekllkiveearvtvlmvthdvdealllsdrvvmltng 191
                  + + +l++ l +++ +++++v m + ++de l++s+r+ ++ + 
  MMETSP1174-20130828|11090_1 100 VRQRQLEDYLTRLMTDEKLAVTMKSAQIDEFLMISQRIKLIQET 143
                  456789999*****************************988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 863.93
//
Query:       MMETSP1174-20130828|11091_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 812.56
//
Query:       MMETSP1174-20130828|11093_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 523.83
//
Query:       MMETSP1174-20130828|11094_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-19   68.2   0.0      2e-19   67.8   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.7e-18   64.8   0.0    2.1e-10   38.3   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.9e-17   60.7   0.0    1.5e-08   32.2   0.0    2.1  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    8.3e-17   59.3   0.4    7.6e-08   30.0   0.0    2.1  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-16   58.7   0.6    4.7e-08   30.3   0.1    2.1  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.4e-16   58.4   0.4      3e-16   57.3   0.3    1.5  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-16   58.3   0.0    8.3e-08   29.8   0.0    2.0  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.9e-16   57.6   0.1    6.6e-08   30.3   0.0    2.2  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.7e-16   55.8   0.8    1.7e-08   31.4   0.1    2.1  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      1e-15   55.7   0.2    1.4e-07   28.9   0.0    2.1  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.6e-15   55.2   0.1    8.4e-15   52.8   0.0    1.8  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.7e-15   55.1   0.3    2.1e-07   28.6   0.0    2.1  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.8e-15   55.0   0.2    2.4e-07   28.5   0.0    2.1  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.9e-15   54.1   0.1    6.8e-14   49.6   0.1    2.1  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      6e-15   53.1   0.1    1.1e-09   35.9   0.0    2.1  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.7e-14   51.6   0.0    1.5e-13   48.5   0.0    1.9  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.6e-14   50.5   0.0    5.5e-08   29.6   0.0    2.0  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.5e-14   50.2   0.0    3.1e-08   31.4   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      1e-13   49.4   0.0    5.8e-07   27.3   0.0    2.1  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.9e-13   48.5   1.1      7e-12   43.4   0.8    2.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.6e-13   47.2   0.0    1.6e-06   24.8   0.0    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.9e-13   46.7   0.1    6.4e-06   22.4   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.1e-13   47.2   0.2    3.7e-08   31.0   0.0    2.1  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.2e-13   46.8   0.0    1.2e-05   22.7   0.0    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    7.5e-13   46.3   0.0    3.3e-12   44.2   0.0    1.8  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    7.9e-13   45.6   0.1    3.8e-06   23.5   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      8e-13   45.6   0.1    8.3e-06   22.5   0.0    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    8.5e-13   46.1   0.2    1.3e-06   25.7   0.0    2.1  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.6e-13   45.2   0.0    7.5e-07   25.6   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.7e-11   41.2   0.1      1e-06   25.5   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
    2.8e-11   40.8   0.1    7.7e-06   22.9   0.0    2.1  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.6e-11   39.5   0.1    9.3e-07   26.0   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.5e-10   38.6   0.0      3e-05   21.1   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.5e-10   38.6   0.0    4.1e-06   24.1   0.0    2.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      2e-10   38.0   0.1    3.9e-05   20.6   0.0    2.1  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.6e-10   37.0   0.2    5.4e-06   23.6   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.2e-09   34.9   0.0    0.00023   17.4   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.7e-09   34.5   0.2    0.00015   18.2   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.2e-09   34.1   0.0      4e-05   20.1   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.9e-09   32.9   0.1    3.9e-05   20.3   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    6.9e-09   33.3   0.2    6.5e-05   20.3   0.0    2.1  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.8e-08   30.5   0.0    0.00013   19.3   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-07   28.6   0.1     0.0015   15.4   0.0    2.1  2  TIGR01288 nodI: nodulation ABC transporter NodI
    3.6e-07   27.9   0.0     0.0033   14.9   0.0    2.1  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      5e-07   27.3   0.0     0.0067   13.8   0.0    2.1  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    7.7e-07   25.9   0.1    8.9e-06   22.4   0.0    1.9  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.9e-06   23.6   0.1      0.012   11.0   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.2e-05   21.8   0.0     0.0047   13.2   0.0    2.0  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.3e-05   22.6   0.0     0.0099   13.2   0.0    2.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.8e-05   21.1   0.3    0.00067   15.8   0.0    2.0  2  TIGR00958 3a01208: antigen peptide transporter 2
    2.3e-05   22.0   0.0     0.0067   13.9   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    0.00038   16.6   0.0     0.0067   12.5   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0011   15.4   0.0      0.003   13.9   0.0    1.7  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
     0.0023   13.2   0.1       0.27    6.3   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0024   14.3   0.0      0.056    9.8   0.0    2.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0088   11.3   0.0      0.035    9.3   0.0    1.8  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
  ------ inclusion threshold ------
      0.045   10.4   0.4       0.12    9.0   0.0    1.7  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI


Domain annotation for each model (and alignments):
>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.7e-21     2e-19     334     508 ..      64     260 ..      50     276 .. 0.75

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.7e-21
    TIGR02857 334 rkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv.........ngaelaeldad.......swrkqiawvpQk.Pllfegtvaenir.....larkdaseaevkealeragldelvkalpqglete.iGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevlealrelaegr 508
                  r   +++++l++ +ge++ ++G SG+GKs ll++++g+ +p++   ++         n+ +l++l++         wr+ +++vpQ  P  +egt +e ++     + r+ a+ +  +++  +  l+ l+  l+  l+   i +   +LSgG+rqR  LA +l  +    +ll+DEPta+ Da+t+a+v++alr++ ++ 
  MMETSP1174-20130828|11094_1  64 RL-LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHDDAMtmhvagpsgNSYTLTNLHTFkprcpmpLWRSFVTYVPQDvPSTLEGTPLEALQdiqgfVCRPPATGSSGNDVRAQRRLEALA--LEMVLDCDvIHRPWYELSGGERQRAFLAVVLSIEPrpVVLLVDEPTAACDASTAARVEAALRAVEQAS 260
                  44.7899*******************************99987655555588999975555555443333377779**********659******88877642254455666666555555555554433..3334555415556689**************987666567788********************998765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.5e-08   3.9e-06      20      60 ..      66     106 ..      55     119 .. 0.89
   2 !   38.3   0.0     3e-12   2.1e-10     117     204 ..     183     273 ..     173     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.5e-08
    TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsG 60 
                  ++++ +l++ +ge+++++G sG Gks ll  ++g+d+p++ 
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQH 106
                  567899********************************975 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 3e-12
    TIGR02211 117 eakerakellekvglekrinkkp.selsGGerqrvaiaralvn..kPklvladePtgnldkktakkifelllelnkekntallvvthdlel 204
                   a++r ++l  ++ l+  + ++p  elsGGerqr+ +a  l    +P ++l dePt+  d++ta ++   l+ +++++  +l++ t  + l
  MMETSP1174-20130828|11094_1 183 RAQRRLEALALEMVLDCDVIHRPwYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMIKTKADVL 273
                  4556666666677788888899856*********97777665511667999*********************************9986655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.2e-08   8.6e-07      10      52 ..      63     105 ..      58     125 .. 0.90
   2 !   32.2   0.0   2.1e-10   1.5e-08     118     183 ..     191     259 ..     175     277 .. 0.72

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.2e-08
    TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkds 52 
                  d+ ++++++l++ +Ge+++++G+sG GKs lL  ++ ++++ +
  MMETSP1174-20130828|11094_1  63 DRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  778899********************************98765 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.1e-10
    TIGR03608 118 vlekvgl.ekklkkkiyelsgGekqRvalarillke..selilADEPtgsLDkknreevlellkelkee 183
                  +  ++ l    +++  yelsgGe+qR  la +l  e  + ++l DEPt++ D+ + + v + l+ ++++
  MMETSP1174-20130828|11094_1 191 LALEMVLdCDVIHRPWYELSGGERQRAFLAVVLSIEprPVVLLVDEPTAACDASTAARVEAALRAVEQA 259
                  3334445356678999**********87777765441156999*************9999999877665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.6e-09   4.1e-07      15      54 ..      66     105 ..      59     118 .. 0.89
   2 !   30.0   0.0     1e-09   7.6e-08     108     176 ..     185     256 ..     177     270 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 5.6e-09
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpds 54 
                   +++ +l++  G+++++lG sG Gks llr+iaG++ p +
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  57899*******************************9976 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1e-09
    TIGR00968 108 kakveel.lelvqleklgdrypsqlsGGqrqrvalaralavepq..vllldepfgaldakvrkelrawlrkl 176
                  ++++e l le+v   ++ +r   +lsGG+rqr  la  l++ep+  vll+dep +a da     + a lr +
  MMETSP1174-20130828|11094_1 185 QRRLEALaLEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAV 256
                  556666546777777778888889*****************986659************9998888888876 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.6e-09   5.5e-07      21      61 ..      64     104 ..      58     118 .. 0.86
   2 !   30.3   0.1   6.5e-10   4.7e-08     120     185 ..     190     257 ..     177     268 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.6e-09
    TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkad 61 
                  r +++ + l+++aGe++++lG+sG Gk+ llra+aG   ++
  MMETSP1174-20130828|11094_1  64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  56778999****************************87765 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 6.5e-10
    TIGR03258 120 adalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpd..vllldeplsaldaqlrasvveelkalh 185
                  a al +v   d+ +r   +lsGG +qr  la  l ++p+  vll+dep +a da   a v   l+a+ 
  MMETSP1174-20130828|11094_1 190 ALALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVE 257
                  4578889999999**99*******************876659*************9999988887765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.3   4.2e-18     3e-16       9     183 ..      59     256 ..      53     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 4.2e-18
    TIGR03873   9 vraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGev....dlagad........lkalsrrara....rrvalveqdsdae...vplsvrdvv..alGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePk..lllldePtnhldvsaqlellalvrel 183
                   +   rl+v+  +++  aG++ ++lG  G Gks llr +aG+ +p++ +     ++ag          l++++ r         v+ v qd+ +    +pl + + +   + r P  +  + d  +   + + al +v   ++ +r +  lsGGerqr  la  l+ eP+  +ll+dePt   d s+   + a++r  
  MMETSP1174-20130828|11094_1  59 ASSVDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHDDamtmHVAGPSgnsytltnLHTFKPRCPMplwrSFVTYVPQDVPSTlegTPLEALQDIqgFVCRPPATGSSGNDVRAQRRLEALALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAV 256
                  5566799***********************************9997753212224555446677777799999997532221468999**998751115777665542358999*************************************************9998765449***********99888777777754 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   9.2e-09   6.6e-07      17      57 ..      66     106 ..      57     130 .. 0.88
   2 !   29.8   0.0   1.2e-09   8.3e-08     137     196 ..     200     261 ..     164     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 9.2e-09
    TIGR02315  17 alknvnleikkGelvaviGlsGaGkstllrsinrlveissg 57 
                   +++ nl++  Ge+++v+G+sG Gks llr+i ++ ++ + 
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQH 106
                  567899*****************************998765 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.2e-09
    TIGR02315 137 elaakradqLsGGqqqRvaia..RalaqqpklilaDEPiasLDpksskqvmdllkrinkekg 196
                  ++ ++   +LsGG++qR  +a   ++ ++p ++l+DEP+a+ D +++ +v  +l+ + + + 
  MMETSP1174-20130828|11094_1 200 DVIHRPWYELSGGERQRAFLAvvLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQASY 261
                  445555679********75551156678899************************9988764 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.2e-08   2.3e-06       2      40 ..      68     106 ..      67     121 .. 0.89
   2 !   30.3   0.0   9.1e-10   6.6e-08      98     176 ..     192     271 ..     179     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.2e-08
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsg 40 
                  ++ +l++  ge+i+++g sg gks ll  iag++ p++ 
  MMETSP1174-20130828|11094_1  68 EHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQH 106
                  678999******************************975 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 9.1e-10
    TIGR01184  98 hielvglreaadkrpeqlsggmkqrvaiaralsi..rpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                   +e+v   +  ++   +lsgg +qr  +a  lsi  rp +ll+dep  a da t   ++   l+ ve+a+   lm+    d
  MMETSP1174-20130828|11094_1 192 ALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVE-AALRAVEQASYGSLMIKTKAD 271
                  5677777788899999*************9999955778***************99885.567888999999999987666 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   6.6e-08   4.7e-06     350     389 ..      66     105 ..      25     118 .. 0.88
   2 !   31.4   0.1   2.3e-10   1.7e-08     470     521 ..     207     260 ..     169     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 6.6e-08
    TIGR02868 350 vlkgvsldlepGervavvGasGaGKstLlallaglldplk 389
                   +++ +ldl +Ge ++v+G+sG+GKs Ll ++ag+  p +
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  578899****************************988765 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 2.3e-10
    TIGR02868 470 arlSGGerqRlalARaLl.adap.vllLDEPtehLDaeteeelledLlaaeegr 521
                    lSGGerqR  lA +L  ++ p vll+DEPt+  Da t++++ ++L+a+e+  
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSiEPRPvVLLVDEPTAACDASTAARVEAALRAVEQAS 260
                  579*************962566635678*******************9988754 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.9e-09   1.4e-07      20      57 ..      67     104 ..      59     114 .. 0.91
   2 !   24.8   0.0   3.4e-08   2.4e-06     119     182 ..     193     258 ..     175     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.9e-09
    TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaGLekqd 57 
                  +++ +l++ +ge++++LG sG Gk+ LLr+iaG++++ 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  67899******************************875 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 3.4e-08
    TIGR03265 119 LelvglsgseekyPgqlsGGqqqrvaLaralal..sPglLLLDePlsaLDakvrekLreelkklqr 182
                  Le+v   ++ ++    lsGG +qr  La  l +  +P +LL+DeP +a Da   +++   l+++ +
  MMETSP1174-20130828|11094_1 193 LEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVEAALRAVEQ 258
                  5555444555555568*********9999988622567*************999999999988765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.2e-16   8.4e-15      26     206 ..      66     266 ..      49     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.2e-16
    TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGe....vsfrG.....qdlakldrkqrk....afrrdvqlvfqdsisavn.....prksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivl..deavsnldlvlqasilellkklkqefGlaylf 206
                  ++++ +l l +Ge +++lGrsG Gks l r + G++ Pa+ +    ++ +G       l++l++ + +      r  v  v qd +s++      + + ++  +  P     s ++ + ++r ++l  ++ l+ +v+++   +lsGG  qr+ +a  l++eP+ +vl  de  +  d    a + + l++++q++  + ++
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHDdamtMHVAGpsgnsYTLTNLHTFKPRcpmpLWRSFVTYVPQDVPSTLEgtpleALQDIQGFVCRPPATGSSGNDVRAQRRLEALALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRPVVLlvDEPTAACDASTAARVEAALRAVEQASYGSLMI 266
                  457789*********************************96422224444422222235555443333111146777999******997533111456677778899999999999**********999*********************************9877556**********************9987555444 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.9e-09   2.1e-07      14      53 ..      67     106 ..      59     117 .. 0.89
   2 !   24.5   0.0   5.2e-08   3.8e-06     105     165 ..     184     247 ..     178     274 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.9e-09
    TIGR01277  14 plefdlsveaGervailGesGaGkstllnliaGflepasG 53 
                    +f+l + aGe++++lG sG Gks ll  iaG  +pa+ 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQH 106
                  568**********************************985 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 5.2e-08
    TIGR01277 105 qkekvedvarqvGia.dylerlpeelsGGqrqrvalarcl.vrekpi.llldepfsaldpklre 165
                   ++++e++a ++ ++ d ++r   elsGG+rqr  la  l ++++p+ ll+dep +a d     
  MMETSP1174-20130828|11094_1 184 AQRRLEALALEMVLDcDVIHRPWYELSGGERQRAFLAVVLsIEPRPVvLLVDEPTAACDASTAA 247
                  57899999*99999879999*99**************99867899972567*******986543 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.3e-09   2.4e-07      13      54 ..      64     105 ..      58     120 .. 0.90
   2 !   24.5   0.0   5.3e-08   3.8e-06     111     188 ..     192     272 ..     179     278 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.3e-09
    TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpes 54 
                  r l+e+ +++l aGe++ v G+ G+GK+ LLR +aG+ +p++
  MMETSP1174-20130828|11094_1  64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  6789999******************************99875 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 5.3e-08
    TIGR01189 111 alekvgLsgledlpvaqLsAGqkrRlalar.LllskaplWiL.DEPttalDkegvellaellaaHla.rgGivllathqdl 188
                  ale v   ++ ++p  +Ls G ++R  la  L ++ +p+ +L DEPt+a D+++ ++++++l+a  +   G+ ++ t+ d+
  MMETSP1174-20130828|11094_1 192 ALEMVLDCDVIHRPWYELSGGERQRAFLAVvLSIEPRPVVLLvDEPTAACDASTAARVEAALRAVEQaSYGSLMIKTKADV 272
                  566666668999***************9973668899987655*******************9865514577777777665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.1   9.5e-16   6.8e-14       9     179 ..      68     262 ..      62     275 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 9.5e-16
    TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrPksG....kvlldG.eeldysrkglle.........lrkkvalvlqdpddqlfaadv..dedva.f..gplnlGlseaeverrvr.e..alaavdisgleerpthllsgGekkrvaiagavalrpd..vllldePtagldpaGaeqlleilrklreeGkt 179
                  +  nl++  ge +++lG+ G Gks ll+ ++G+  P +     ++ + G +   y   +l +         +r  v++v qd    l  + +   +d+  f   p   G s+++v+++ r e  al++v   ++ +rp   lsgGe++r  +a +++++p+  vll+dePta  d++ a ++ ++lr ++++   
  MMETSP1174-20130828|11094_1  68 EHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHddamTMHVAGpSGNSYTLTNLHTfkprcpmplWRSFVTYVPQDVPSTLEGTPLeaLQDIQgFvcRPPATGSSGNDVRAQRRlEalALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQASYG 262
                  6789******************************99754221133444423345665555442222333337999********9999877541168885352257789999999986443251245566667889***************99999999765448999********************99887443 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.2e-05    0.0023      17      49 ..      67      99 ..      59     116 .. 0.88
   2 !   35.9   0.0   1.5e-11   1.1e-09     121     193 ..     184     259 ..     177     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.2e-05
    TIGR00972 17 lkdvnleikknkvtaliGpsGcGkstllrslnr 49
                 +++ nl++ + ++++++G sG Gks llr++  
  MMETSP1174-20130828|11094_1 67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAG 99
                 67899************************9975 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 1.5e-11
    TIGR00972 121 veesLkkaalwdevk.dklkksalsLsGGqqqrlciaralavePe..vlLlDePtsaLDpiatekieeliqeLkkk 193
                  ++++L+  al   +  d +++  ++LsGG +qr  +a  l++eP   vlL+DePt+a D+ +++++e+ ++ +++ 
  MMETSP1174-20130828|11094_1 184 AQRRLEALALEMVLDcDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQA 259
                  566666666654443267899999**************9999875449********************99988764 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.1e-15   1.5e-13       1     180 [.      66     265 ..      66     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 2.1e-15
    TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..............alrgreialilqnPrsaf..nPlltikeqlletlkaleklskqakelivealeavgLeea..eevlkkypfelsGGmlqRvmialalllea..plliaDePttdlDvvvqaevLklleelrekrglgil 180
                  lv++ nl+l  g++++++G sG Gks    ai g+  + +   +  + ++g + ++                l    ++++ q+  s++  +Pl ++++     ++     s+    ++ + lea +Le +    v++   +elsGG  qR  +a+ l +e+   +l+ DePt++ D+ ++a+v   l+ +++ +  +++
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHDDAMTMHVAGPSGNSYtltnlhtfkprcpmPLWRSFVTYVPQDVPSTLegTPLEALQDIQGFVCRPPATGSSGNDVRAQRRLEALALEMVldCDVIHRPWYELSGGERQRAFLAVVLSIEPrpVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLM 265
                  79************************************9999999999999988887888999999999986777788999999877774469999998887778776666666666677888888888652257999999**************998887532799*********************999887654444 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06   9.3e-05      16      64 ..      67     115 ..      59     133 .. 0.86
   2 !   29.6   0.0   7.6e-10   5.5e-08     166     225 ..     206     267 ..     179     277 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-06
    TIGR03269  16 lknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyhva 64 
                  +++ +l+l+ Ge++ +lG+sG Gks ll+ + G+d   +++  +  hva
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHDDAMTMHVA 115
                  5788999***************************997777777777766 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 7.6e-10
    TIGR03269 166 ardlsGGekqrvvlarqlake..plllladeptGtldpktaklvhealkeavkeedislvlt 225
                    +lsGGe+qr  la  l+ e  p++ll dept + d +ta  v  al++  +++  sl++ 
  MMETSP1174-20130828|11094_1 206 WYELSGGERQRAFLAVVLSIEprPVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMIK 267
                  359*********9999887652279********************99998877776666654 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-05   0.00093      18      56 ..      67     105 ..      55     129 .. 0.89
   2 !   31.4   0.0   4.4e-10   3.1e-08     115     189 ..     185     262 ..     176     282 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-05
    TIGR02673  18 LkdvslkiekgeflfltGasGaGkttllklllgaekpsr 56 
                  +++ +l + +ge++ + G+sG Gk+ ll+ + g+++p +
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  5678999***************************99976 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 4.4e-10
    TIGR02673 115 qkrveevlelvgle.dkakalpeelsgGeqqRvaia..RaivnkPelllaDePtGnlDdelserildllkelnkrGtt 189
                  q+r e++   + l+ d ++    elsgGe+qR  +a   +i  +P +ll+DePt   D+++++r+ + l++++++   
  MMETSP1174-20130828|11094_1 185 QRRLEALALEMVLDcDVIHRPWYELSGGERQRAFLAvvLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQASYG 262
                  555655544444441444455579********86661157778899*********************99999887553 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-06   8.9e-05      17      58 ..      65     106 ..      53     132 .. 0.88
   2 !   27.3   0.0   8.1e-09   5.8e-07     114     194 ..     184     266 ..     168     279 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-06
    TIGR00960  17 laldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaG 58 
                  l +++ ++++  Ge++ + G sG Gks ll+ i gi++p++ 
  MMETSP1174-20130828|11094_1  65 LLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQH 106
                  556789999*****************************9875 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 8.1e-09
    TIGR00960 114 eieervsaalekvGlkdkakalPvqlsgGeqqrvaiar..avvnkPallladePtgnlddelsrdilelleevnraGttvlva 194
                  + ++    ale v   d  ++   +lsgGe+qr  +a   ++  +P +ll dePt+  d  ++  +   l+ v++a    l+ 
  MMETSP1174-20130828|11094_1 184 AQRRLEALALEMVLDCDVIHRPWYELSGGERQRAFLAVvlSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMI 266
                  344444557777777777788889*********76665116778999******************999999999887766654 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.8   9.7e-14     7e-12       2     170 ..      73     267 ..      72     284 .. 0.69

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 9.7e-14
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakG....svkvagkssrkgr..rei.Gy.....vpqrhefaw....dfpidveqtvlsGragliGllrrp.....kkadfaavad....alervklteladrpvGelsGGqrqrvlvaralavkps..lllldepftGldlpsqellvelfeelagegtailmtt 170
                  ++ +Ge++++lG  G Gk+ llrai g+ ++a+     +++vag s ++++  +++  +     +p    f      d p  +e+t l+      G++ rp     + +d +a +     ale v   ++ +rp  elsGG+rqr ++a  l+++p+  +ll+dep +  d  +  ++   ++++ ++    lm  
  MMETSP1174-20130828|11094_1  73 DLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHddamTMHVAGPS-GNSYtlTNLhTFkprcpMPLWRSFVTyvpqDVPSTLEGTPLEALQDIQGFVCRPpatgsSGNDVRAQRRlealALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMIK 267
                  5678***********************9877653222278999954.33331122212311111344445544122255555566777778888888888722222235676654333338889999999***********************9865449******************999999999887666543 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.7e-07   3.4e-05     468     507 ..      66     105 ..      60     107 .. 0.90
   2 !   24.8   0.0   2.2e-08   1.6e-06     588     634 ..     208     256 ..     195     260 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.7e-07
    TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStllrlLLgFekPes 507
                   +++ +l   +Ge +++ G SG GKS llr + g ++P++
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  567889999*****************************75 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 2.2e-08
    TIGR03797 588 tlSGGQrQRlliAralv..rkPrillfDEATSALDNrtQaiVseslekl 634
                   lSGG rQR ++A  l    +P +ll+DE T A D  t a V ++l ++
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSiePRPVVLLVDEPTAACDASTAARVEAALRAV 256
                  79*********998655116777********************999876 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     1e-07   7.3e-06     489     532 ..      61     104 ..      58     111 .. 0.92
   2 !   22.4   0.0   8.9e-08   6.4e-06     615     659 ..     208     254 ..     197     260 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1e-07
    TIGR03796 489 aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepw 532
                   +++ l+e+f+l+l  G+ + + G sG Gks + + +aG+ +p 
  MMETSP1174-20130828|11094_1  61 SVDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  67899**********************************98876 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 8.9e-08
    TIGR03796 615 nlsGGqrqRleiARaLvk..nPsiLilDEatsaLDaetEkaidenlr 659
                   lsGG+rqR  +A  L    +P +L++DE t+a Da+t  +++++lr
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVEAALR 254
                  69*******99998887512689********************9998 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.7e-05    0.0048      20      56 ..      66     102 ..      58     121 .. 0.86
   2 !   31.0   0.0   5.2e-10   3.7e-08     122     198 ..     184     267 ..     158     276 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.7e-05
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrs 56 
                  ++ + nl++ +gei+ + G sG Gk  ll  i+g+ +
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDT 102
                  566789**************************99876 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.2e-10
    TIGR02982 122 aeelleavglee.....rldykpedlsgGqkqrvaiaralv..arPklvladePtaaldkksgrevvellqklareqgttillv 198
                  a+  lea+ le       +++   +lsgG +qr  +a  l    rP ++l dePtaa d++++  v   l+ + +    ++++ 
  MMETSP1174-20130828|11094_1 184 AQRRLEALALEMvldcdVIHRPWYELSGGERQRAFLAVVLSiePRPVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMIK 267
                  4455555555543333256666689********8777777611577899*************9999888887655554444444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.7e-07     2e-05      16      51 ..      67     102 ..      60     115 .. 0.88
   2 !   22.7   0.0   1.7e-07   1.2e-05     123     182 ..     200     261 ..     175     276 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.7e-07
    TIGR03410  16 lrdvslevekgevvavlGrngvGkttllkalvgllk 51 
                  +++ +l++ +ge+++vlGr gvGk+ ll+a+ g+ +
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDT 102
                  567899999***********************9865 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.7e-07
    TIGR03410 123 emlkRrgGdLsGGqqqqlaiaRaLvtePk..lllLDePteGiqPsiikeiekvikelakekd 182
                  ++ +R   +LsGG +q   +a +L  eP+  +ll+DePt     s  + +e++++++++ + 
  MMETSP1174-20130828|11094_1 200 DVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQASY 261
                  678889999*******9888877777665449999********************9998754 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   4.6e-14   3.3e-12      17     196 ..      60     257 ..      48     272 .. 0.73

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 4.6e-14
    TIGR02324  17 gGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesg.rilvrh.eg......eivdlvkaserevlevRrktigyvsq....fLrviPRvsalev...vae.pllelGvereearakakellarlniperLWslaPatfsGGekqRvniaral.iadrPi.LLLdePtasLdaanrkvvvelikeak 196
                    v +  +++ +l++ aGe++++ G+sG Gks ll+++ +   p++    ++ h  g       +++l + ++r  + + r+ ++yv q     L   P  +  ++   v + p++    ++ +a+ + ++l   + +   + + +    sGGe+qR  +a  l i +rP+ LL+dePta+ da++ + v   ++ + 
  MMETSP1174-20130828|11094_1  60 SSVDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHdDAMTMHvAGpsgnsyTLTNLHTFKPRCPMPLWRSFVTYVPQdvpsTLEGTPLEALQDIqgfVCRpPATGSSGNDVRAQRRLEALALEMVLDCDVIHRPWYELSGGERQRAFLAVVLsIEPRPVvLLVDEPTAACDASTAARVEAALRAVE 257
                  55667778999***************************9877765431222222122222222578999999***************99444446677877777753334441444455556677777777777777777888999999************987588999736679*********9988877776655 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.4e-07   4.6e-05     331     371 ..      64     104 ..      49     111 .. 0.84
   2 !   23.5   0.0   5.3e-08   3.8e-06     453     518 ..     207     274 ..     190     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 6.4e-07
    TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpa 371
                  +  +++ ++ l aGe+++++G sg Gks L r + G+ +pa
  MMETSP1174-20130828|11094_1  64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  4567889999**************************98876 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 5.3e-08
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvL..DePnanLDeeGeqalakalkelkarkitvvvithrpslle 518
                   +LsgG rqR  La  l  +P+ vvL  DeP a  D++  + + +al ++ ++    ++i  ++ +l 
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSIEPRPVVLlvDEPTAACDASTAARVEAALRAVEQASYGSLMIKTKADVLL 274
                  57************99998876554444********************************99998875 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.7e-07   1.9e-05     334     376 ..      63     105 ..      50     115 .. 0.77
   2 !   22.5   0.0   1.2e-07   8.3e-06     152     206 ..     199     255 ..     178     274 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.7e-07
    TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpds 376
                  d+ll+++++++l +g i+ v+G  G+Gks l++ i+g ++p +
  MMETSP1174-20130828|11094_1  63 DRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  7888888888888888888888888888888888888777654 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.2e-07
    TIGR03719 152 lpeedakveklsGGekrrvalcrllle..kPdlllldePtnhldaesvaWlekflke 206
                  +        +lsGGe++r  l+ +l    +P +ll+dePt   da + a +e  l+ 
  MMETSP1174-20130828|11094_1 199 CDVIHRPWYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVEAALRA 255
                  555555566777777777766665543124567777777777777777777776654 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.9e-06   0.00021      17      51 ..      71     105 ..      64     123 .. 0.88
   2 !   25.7   0.0   1.8e-08   1.3e-06     119     175 ..     197     254 ..     174     261 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.9e-06
    TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpde 51 
                  +l+l + +++++ GrsG Gk+ l+r+iaG+ +p++
  MMETSP1174-20130828|11094_1  71 NLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  67788889**********************99976 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.8e-08
    TIGR02142 119 LgiehLleRlpgkLsGGekqRvaigRAlLssPe..LLlmDePLaaLDekrkkeilPyLe 175
                  L    +++R   +LsGGe+qR  ++  l  +P+  +Ll+DeP aa D +  + +   L+
  MMETSP1174-20130828|11094_1 197 LDC-DVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALR 254
                  222.35689999*********877776665554339***********998777765555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.6e-06   0.00019     483     520 ..      67     104 ..      60     108 .. 0.90
   2 !   25.6   0.0     1e-08   7.5e-07     603     651 ..     208     258 ..     197     277 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.6e-06
    TIGR03375 483 LknvslkikpGekvaiiGriGsGKstllklllglyept 520
                  +++ +l++ +Ge + ++Gr G GKs ll+ ++g+ +p 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  67889***************************998775 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1e-08
    TIGR03375 603 sLSgGQrqavalaRallkdpp..illLDEPtsalDnsseekllerLkella 651
                  +LSgG rq   la +l  +p+  +ll+DEPt+a D+s+ +++  +L+++ +
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQ 258
                  7************99976654339999*******************99876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     4e-05    0.0029      49      78 ..      75     104 ..      50     131 .. 0.80
   2 !   25.5   0.0   1.4e-08     1e-06     166     214 ..     208     258 ..     179     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4e-05
    TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrsekg 78 
                    Ge++ vlG SG GK+ Ll a+a  ++  
  MMETSP1174-20130828|11094_1  75 GAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  57*********************9876654 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.4e-08
    TIGR00955 166 glSgGerkR..lalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq 214
                   lSgGer+R  la+   +   P++L++DEPT+  D+ +aa v  +L+ + q
  MMETSP1174-20130828|11094_1 208 ELSGGERQRafLAVVLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQ 258
                  69*******44455556677899*******************999997654 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.1e-07   7.7e-06      38      75 ..      65     102 ..      49     111 .. 0.88
   2 !   16.0   0.0   1.4e-05   0.00098     142     199 ..     186     245 ..     176     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.1e-07
    TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnp 75 
                  l v++ +ld+  Gei+ ++G sG Gks llra+ g+++
  MMETSP1174-20130828|11094_1  65 LLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDT 102
                  679999****************************9976 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.4e-05
    TIGR03415 142 rkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafatead..illmdePfsaldPli 199
                  r+  +  le+v   +  ++   elsGG +qr  la  +++e    +ll+deP +a d   
  MMETSP1174-20130828|11094_1 186 RRLEALALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDAST 245
                  3344457888888899999999******************96334899*******99755 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00035     0.025       1      23 [.      82     104 ..      82     113 .. 0.90
   2 !   26.0   0.0   1.3e-08   9.3e-07      79     147 ..     185     257 ..     175     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00035
    TIGR01187   1 lLGpsGsGkttlLrllaGleeld 23 
                  +LG sG Gk+ lLr +aG++++ 
  MMETSP1174-20130828|11094_1  82 VLGRSGVGKSRLLRAIAGIDTPA 104
                  69*****************9986 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.3e-08
    TIGR01187  79 ervke..aLelvqleefakrkpsqlsGGqrqrvala..ravvkkPkiLLlDeplsaLDkkLrdqmqlelkalq 147
                  +r  e  aLe+v   ++ +r   +lsGG rqr  la   ++  +P +LL+Dep +a D     ++   l+a++
  MMETSP1174-20130828|11094_1 185 QRRLEalALEMVLDCDVIHRPWYELSGGERQRAFLAvvLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVE 257
                  4444412567888889999999**********76661156777889************999888888888775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-05    0.0016       8      42 ..      66     100 ..      60     107 .. 0.87
   2 !   21.1   0.0   4.1e-07     3e-05     105     169 ..     182     250 ..     171     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.2e-05
    TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrl 42 
                   v++ +l++  Geii ++G sG Gks l+r +  +
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGI 100
                  58899************************998765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 4.1e-07
    TIGR01186 105 erkekalealklvdl..eeyedryPdelsGGmqqrvGlaralaaePd..lllmdeafsaldPlirdelq 169
                   r ++ leal l  +   +  +r   elsGG +qr  la  l++eP   +ll+de+ +a d  +   + 
  MMETSP1174-20130828|11094_1 182 VRAQRRLEALALEMVldCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVE 250
                  56777777776543334688999999******************97444899********987766655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0    0.0002     0.014       9      46 ..      67     104 ..      63     116 .. 0.90
   2 !   24.1   0.0   5.6e-08   4.1e-06     102     175 ..     185     261 ..     175     274 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0002
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPd 46 
                  v++ nl++ +ge++ +LG  G GK+ +++ ++++ +P 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  8999**************************99998886 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 5.6e-08
    TIGR01188 102 eeraeel.lelvelkeaadkkvktysgGmrrr..lelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegv 175
                  ++r e l le+v   +  +++  ++sgG r+r  l ++ s+  +P vl +DEPt   D+ t++ +   +++++++  
  MMETSP1174-20130828|11094_1 185 QRRLEALaLEMVLDCDVIHRPWYELSGGERQRafLAVVLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQASY 261
                  444444435666666777888999********44445556667888********************99999988754 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05    0.0015      22      59 ..      68     105 ..      53     114 .. 0.89
   2 !   20.6   0.0   5.4e-07   3.9e-05     140     208 ..     208     277 ..     176     284 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-05
    TIGR02314  22 dnvslfvpkgqifgvigasgagkstlircvnllekpts 59 
                  ++ +l + +g+i+ v+g sg gks l+r +  +++p++
  MMETSP1174-20130828|11094_1  68 EHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  6789999************************9999986 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 5.4e-07
    TIGR02314 140 nlsggqkqrvaiaralasepk..vllcdeatsaldpattqsilellkeinrrlgltillithemdvvkric 208
                  +lsgg++qr  +a  l+ ep+  vll de t+a d +t+  +   l+ +++  +   l+i  + dv+   c
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVEQ-ASYGSLMIKTKADVLLTAC 277
                  79********99999998875559***************999999998875.4666777777777777666 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00039     0.028      16      50 ..      67     101 ..      61     131 .. 0.85
   2 !   23.6   0.0   7.5e-08   5.4e-06     125     192 ..     188     256 ..     169     273 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00039
    TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmtle 50 
                  ++ ++l++ aGe ++++G sG Gks +lr +  ++
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGID 101
                  57899************************887665 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 7.5e-08
    TIGR03005 125 kravelldmvGladkadalpaqlsGGqkqrvaiaralalrpk..vllfdevtsaldpelveevlnvlrrl 192
                    a+  l+mv  +d  +    +lsGG++qr  +a  l+++p+  vll de+t+a d      v + lr +
  MMETSP1174-20130828|11094_1 188 LEAL-ALEMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAV 256
                  3333.36899888888887889*********99999999766559***********99998888887765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05   0.00086     473     510 ..      67     104 ..      60     112 .. 0.90
   2 !   17.4   0.0   3.2e-06   0.00023     593     640 ..     208     257 ..     199     267 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.2e-05
    TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPe 510
                  +++++ld+ aGe+i + G+sG Gks l + +  + +P 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  6789*************************999999996 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.2e-06
    TIGR01846 593 alsGGqrqrialaralvanPr..ilildeatsaldyeseavimrnlreic 640
                  +lsGG rqr  la  l  +Pr  +l++de t+a d+ + a +   lr++ 
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAVE 257
                  69************9999988668999**********9999999888875 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.8e-05     0.002     345     379 ..      63      97 ..      41     115 .. 0.89
   2 !   18.2   0.0   2.1e-06   0.00015     470     519 ..     208     259 ..     195     270 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.8e-05
    TIGR02203 345 drealdsislkveaGevvalvGrsGsGkstlvnll 379
                  dr  +++++l++ aGe++ + GrsG Gks l++ +
  MMETSP1174-20130828|11094_1  63 DRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAI 97 
                  6677899**********************998766 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.1e-06
    TIGR02203 470 kLsGGqRqRlaiaRal.lkdaP.iLiLDeatsaLDneseRlvqaaLerlmkg 519
                  +LsGG RqR  +a  l +   P +L++De t+a D+    +v aaL ++ + 
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLsIEPRPvVLLVDEPTAACDASTAARVEAALRAVEQA 259
                  79*******777766633445526888*******************998764 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015     0.011      18      57 ..      68     107 ..      59     116 .. 0.85
   2 !   20.1   0.0   5.6e-07     4e-05     402     444 ..     207     251 ..     186     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
    TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvlsgvyphGtyd 57 
                  +  +l l aGei+++ G  G Gks l++ ++g+    ++d
  MMETSP1174-20130828|11094_1  68 EHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQHD 107
                  667899**************************98766665 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 5.6e-07
    TIGR02633 402 arlsGGnqqkavlakllllnpr..vlildeptrGvdvGakyeiyk 444
                   +lsGG++q+a la +l+++pr  vl++dept   d  + + +  
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEA 251
                  579****************987669999******99877666555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00048     0.034     351     386 ..      62      97 ..      47     107 .. 0.87
   2 !   20.3   0.0   5.4e-07   3.9e-05     476     524 ..     208     258 ..     200     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00048
    TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllell 386
                   d++ +++++l + +Ge + + G sG Gks ll+ +
  MMETSP1174-20130828|11094_1  62 VDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAI 97 
                  5788899*************************9876 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 5.4e-07
    TIGR02204 476 tLsGGqkqriaiarai..lkdapiLLLdeatsaLdaeseqlvqqaleelmk 524
                  +LsGG +qr  +a  +       +LL+de t+a da +  +v+ al ++ +
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLsiEPRPVVLLVDEPTAACDASTAARVEAALRAVEQ 258
                  79*******766666510444558999******************988765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00055      0.04      16      53 ..      66     103 ..      58     128 .. 0.80
   2 !   20.3   0.0     9e-07   6.5e-05     111     182 ..     186     260 ..     176     270 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00055
    TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyea 53 
                   +++ +l++  ge++ +LG  G Gks L+  ++++ + 
  MMETSP1174-20130828|11094_1  66 LVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTP 103
                  5678899***********************99998654 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 9e-07
    TIGR03864 111 erieealarlgla.eraeekvreLnGGhrrrveiarallh..ePklLLlDeatvGLDiesraalveevrelvree 182
                  +r+e++  ++ l  +  +    eL+GG+r+r  +a  l    +P +LL+De+t+  D+++ a++ +++r++ +++
  MMETSP1174-20130828|11094_1 186 RRLEALALEMVLDcDVIHRPWYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDASTAARVEAALRAVEQAS 260
                  44444444444431334445679********99998876512567*****************9999999887654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.8e-06   0.00013      12      50 ..      63     101 ..      58     114 .. 0.88
   2 !    9.1   0.0    0.0023      0.17     145     202 ..     209     268 ..     181     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.8e-06
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  d+ +++ +nl++ +Ge+  ++G+ G Gks L +++ag +
  MMETSP1174-20130828|11094_1  63 DRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGID 101
                  5667899*****************************965 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0023
    TIGR01978 145 fsGGekkrneilqlallePklaiL..DeiDsGlDvDalkivaegvnklreeekalliith 202
                   sGGe++r  +  ++ +eP+ ++L  De  +  D  +   v + +  +++ + + l+i  
  MMETSP1174-20130828|11094_1 209 LSGGERQRAFLAVVLSIEPRPVVLlvDEPTAACDASTAARVEAALRAVEQASYGSLMIKT 268
                  7****************997554334********99999999999999999777776654 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05    0.0015      12      58 ..      59     105 ..      52     119 .. 0.89
   2 !   11.3   0.0   0.00038     0.027     134     181 ..     207     256 ..     187     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-05
    TIGR01288  12 ksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispde 58 
                   s  d+++v+++ + + age + +lg  g gks + r + g+ +p +
  MMETSP1174-20130828|11094_1  59 ASSVDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  577899************************************99976 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00038
    TIGR01288 134 adlsggmkrrltlaralindpq..llildepttgldpharhliwerlrsl 181
                   +lsgg ++r  la  l  +p+  +l++dept+  d  +   +   lr++
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEAALRAV 256
                  579************9987765338889********98877777777765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00078     0.056      18      56 ..      67     105 ..      62     113 .. 0.90
   2 !   14.9   0.0   4.6e-05    0.0033     123     190 ..     187     257 ..     177     267 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00078
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpde 56 
                  +++++l++ +ge+ +++G  G Gk+ ll +i+G   p++
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  6899*****************************877765 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 4.6e-05
    TIGR03411 123 rieev.leligLeekadkkaglLshGqkqw..LeigmllvqepkllllDePvaGmtdeetektaellkela 190
                  r+e++ le++   +  ++   +Ls G++q+  L + + +  +p +ll+DeP+a   ++  +++   l++++
  MMETSP1174-20130828|11094_1 187 RLEALaLEMVLDCDVIHRPWYELSGGERQRafLAVVLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVE 257
                  5555413444444667888889****999711555555566778*********988887777777777665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.3e-05    0.0067      24      55 ..      74     105 ..      63     141 .. 0.84
   2 !   11.6   0.0   0.00044     0.031     140     192 ..     207     263 ..     174     277 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.3e-05
    TIGR02323  24 lypGevlgivGesGsGkstllkalaarllada 55 
                  l  Ge+++++G sG Gks ll a+a+  ++ +
  MMETSP1174-20130828|11094_1  74 LGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  568**********************9766655 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00044
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm...eptGGl.vsvqarllllrglvrelglav 192
                   ++sGG +qr  +a +l  +pr v++   ept     s  ar+    + v +++   
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSIEPRPVVLlvdEPTAACdASTAARVEAALRAVEQASYGS 263
                  478******************96554468****998999999985444455555544 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.3        22     354     387 ..      70     103 ..      60     112 .. 0.82
   2 !   22.4   0.0   1.2e-07   8.9e-06     471     520 ..     208     259 ..     198     273 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.3
    TIGR01192 354 vsfeakagqtvaivgptgagkttlinllqrvydp 387
                    ++  ag+ ++++g +g gk+ l+  +  +  p
  MMETSP1174-20130828|11094_1  70 FNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTP 103
                  5667789***************999877666555 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.2e-07
    TIGR01192 471 rlsggerqr..laiarailknapilvldeatsaldvetearvkdaidalrkn 520
                  +lsggerqr  la+  +i     +l++de t+a d  t arv +a+ a+++ 
  MMETSP1174-20130828|11094_1 208 ELSGGERQRafLAVVLSIEPRPVVLLVDEPTAACDASTAARVEAALRAVEQA 259
                  69*******444555566666668999********************99885 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0    0.0002     0.014      83     111 ..      73     101 ..      52     122 .. 0.79
   2 !   11.0   0.0   0.00017     0.012     900     948 ..     207     256 ..     186     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0002
    TIGR00956  83 likpgelvvvLGrPgsGcstlLksiaskt 111
                   + +ge++ vLGr g G+s lL++ia+  
  MMETSP1174-20130828|11094_1  73 DLGAGEIITVLGRSGVGKSRLLRAIAGID 101
                  5679**********************854 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00017
    TIGR00956 900 eGLnveqRkrltigveLvAkPkll.lFlDePtsGLDsqtawsivkllrkl 948
                    L+   R+r+ ++v L  +P+ + l +DePt+  D+ ta+ +   lr +
  MMETSP1174-20130828|11094_1 207 YELSGGERQRAFLAVVLSIEPRPVvLLVDEPTAACDASTAARVEAALRAV 256
                  5677778999999999999998651567*************999888876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.5e-05    0.0047     457     502 ..      55     100 ..      26     108 .. 0.87
   2 !    6.7   0.0     0.006      0.43     578     615 ..     204     242 ..     176     259 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.5e-05
    TIGR00954 457 niplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgel 502
                   +p +   +  l+e+ ++++  G+ + ++G  G GKs l R ++++
  MMETSP1174-20130828|11094_1  55 AVPSASSVDRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGI 100
                  56666667789********************************997 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.006
    TIGR00954 578 qdWkdvLsgGekqRiamARlfyHkPkfavL..DEctsAvs 615
                  + W  +LsgGe+qR  +A ++   P+ +vL  DE t+A  
  MMETSP1174-20130828|11094_1 204 RPWY-ELSGGERQRAFLAVVLSIEPRPVVLlvDEPTAACD 242
                  4565.59*************999888777656**999964 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0077      0.56      19      51 ..      68     100 ..      59     119 .. 0.83
   2 !   13.2   0.0   0.00014    0.0099     128     174 ..     203     251 ..     178     268 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0077
    TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgy 51 
                  ++  ++   Gei+  lG  G Gks l++ ++g 
  MMETSP1174-20130828|11094_1  68 EHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGI 100
                  566677789******************999875 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 0.00014
    TIGR03522 128 hkkigalskGyrqrvGlakallhdPk..vlildePttGldPnqlveire 174
                  h+   +ls G rqr+ la  l  +P+  vl++dePt+  d      + +
  MMETSP1174-20130828|11094_1 203 HRPWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVEA 251
                  667789************98876654339999*****999876665555 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.055         4     494     524 ..      64      94 ..      52     105 .. 0.83
   2 !   15.8   0.0   9.2e-06   0.00067     617     662 ..     208     259 ..     201     275 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.055
    TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStva 524
                  + +++  ++ l +Ge++++ G sG GKS   
  MMETSP1174-20130828|11094_1  64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLL 94 
                  4567889999******************765 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 9.2e-06
    TIGR00958 617 qlsgGqkqriAiARALvr..kPrvLiLDeAtSALDa....eveqllqesksa 662
                   lsgG +qr  +A  L    +P+vL++De t+A Da    +ve++l + ++a
  MMETSP1174-20130828|11094_1 208 ELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDAstaaRVEAALRAVEQA 259
                  59*******88888875412678*************8888888888765443 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.3e-05    0.0067      13      53 ..      64     104 ..      56     115 .. 0.89
   2 ?    6.0   0.0     0.025       1.8     119     158 ..     203     244 ..     181     266 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.3e-05
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrkt 53 
                  + +v++ +l +   ++ ++lG  G Gks ll+ ++G+ +++
  MMETSP1174-20130828|11094_1  64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPA 104
                  6789********************************97665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.025
    TIGR03740 119 kkkakqfslGmkqrlGiaialln..kPkllildePtnGldPl 158
                   +   ++s G +qr  +a+ l    +P +l++dePt   d  
  MMETSP1174-20130828|11094_1 203 HRPWYELSGGERQRAFLAVVLSIepRPVVLLVDEPTAACDAS 244
                  556667899999**888777755015679999****998865 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.13         9     625     652 ..      69      96 ..      50     108 .. 0.78
   2 !   12.5   0.0   9.3e-05    0.0067     814     897 ..     194     276 ..     180     279 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.13
    TIGR00630 625 didvsiplglltvitGvsgsGkstLind 652
                  + ++++  g+++++ G sg Gks L+  
  MMETSP1174-20130828|11094_1  69 HFNLDLGAGEIITVLGRSGVGKSRLLRA 96 
                  5566777777777888888888877765 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 9.3e-05
    TIGR00630 814 dvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksa 897
                  ++ L+   + +p + LsGGe qr  La  Ls +     + ++DePt+       +++   l+ + ++    ++i    dv+ +a
  MMETSP1174-20130828|11094_1 194 EMVLDCDVIHRPWYELSGGERQRAFLAVVLSIEP-RPVVLLVDEPTAACDASTAARVEAALRAVEQASYGSLMIKTKADVLLTA 276
                  4455555566778888888888888888888765.4566677888887776666666666666666666666666666666555 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.2e-05     0.003     490     651 ..      67     250 ..      59     260 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-05
    TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllvkff.qaesG...eill.....ngkslkdidkhe.......lrqlinylPqe.PfifsGsilenll....lgakenvsqeeikkaveiaeikd..dieklplGyqtelsee.assisgGqkqrlalarallsdsk..vlildestsnldlltekkiv 651
                  +e+ +l++ + e it++G sG Gks l + + +    a++    ++++     n+ +l+++   +        r +++y+Pq+ P  ++G+ le l     +  ++ ++      + + +  +   +   l++ ++ ++ +    ++sgG +qr  la  l  + +  vl++de t+  d  t  ++ 
  MMETSP1174-20130828|11094_1  67 VEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDtPAQHDdamTMHVagpsgNSYTLTNLHTFKprcpmplWRSFVTYVPQDvPSTLEGTPLEALQdiqgFVCRPPATG----SSGNDVRAQRrlEALALEMVLDCDVIHRpWYELSGGERQRAFLAVVLSIEPRpvVLLVDEPTAACDASTAARVE 250
                  6788999999********************999874223321113333333334566777765432222232689*******989*********9852111122333333....33333333330044456677788766541689********988887766543338999******9998887765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0037      0.27    1300    1338 ..      65     103 ..      47     115 .. 0.83
   2 !    5.0   0.0    0.0093      0.67     760    1465 ..     208     254 ..     184     278 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0037
    TIGR00957 1300 lvlrdlnvtieggekvgivgrtgagkssltlglfrines 1338
                   l++ ++n+ +  ge + ++gr+g gks l  ++  i   
  MMETSP1174-20130828|11094_1   65 LLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTP 103 
                   6678999*******************9998777666655 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0093
    TIGR00957  760 nlsggqkqrvslaravysd..adiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstir 1465
                   +lsgg++qr  la  +  +    + l+d+p +a da                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      t   +++++r
  MMETSP1174-20130828|11094_1  208 ELSGGERQRAFLAVVLSIEprPVVLLVDEPTAACDA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STAARVEAALR 254 
                   455555555555543332211344555555555555.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................55555544444 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00078     0.056     353     395 ..      63     105 ..      49     114 .. 0.83
   2 ?    2.4   0.0      0.13       9.6     467     501 ..     206     242 ..     173     249 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00078
    TIGR01194 353 egfalGpidlriasGelvyivGenGcGkstliklllGlyipqe 395
                  + + +   +l +  Ge++ ++G  G Gks l++ + G+  p +
  MMETSP1174-20130828|11094_1  63 DRLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIDTPAQ 105
                  4555667899***************************999864 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.13
    TIGR01194 467 ttdlstGqrkrlal.vnayleerpv.llldewaadqd 501
                    +ls G+r+r  l v   +e rpv ll+de +a  d
  MMETSP1174-20130828|11094_1 206 WYELSGGERQRAFLaVVLSIEPRPVvLLVDEPTAACD 242
                  4589999999965524456899**7245699877666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00049     0.035    1232    1288 ..      64     125 ..      45     266 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00049
    TIGR01271 1232 ravlqdlsfsveagqrvgllgrtgsgkstllsallrl...lsteg..eiqidgvswnsvtlq 1288
                   r +++++ + + ag+ + +lgr+g gks ll a+  +   ++ +    +++ g s ns tl 
  MMETSP1174-20130828|11094_1   64 RLLVEHFNLDLGAGEIITVLGRSGVGKSRLLRAIAGIdtpAQHDDamTMHVAGPSGNSYTLT 125 
                   55677788888999999999999999999999987652112222211345666666666654 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0017      0.12     132     159 ..      72      99 ..      65     106 .. 0.89
   2 ?   -1.1   0.1       1.9   1.3e+02     198     221 ..     238     261 ..     212     275 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0017
    TIGR03496 132 ltvgkGqrlglfagsGvGKsvLlgmlar 159
                  l +g G  + ++  sGvGKs Ll  +a 
  MMETSP1174-20130828|11094_1  72 LDLGAGEIITVLGRSGVGKSRLLRAIAG 99 
                  67899******************99986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.9
    TIGR03496 198 aatadespllrlraaalataiaey 221
                  +a+ d s+  r++aa  a++ a y
  MMETSP1174-20130828|11094_1 238 TAACDASTAARVEAALRAVEQASY 261
                  4788999999*****999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        89  (0.0216967); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 0.74u 0.20s 00:00:00.94 Elapsed: 00:00:00.71
# Mc/sec: 531.67
//
Query:       MMETSP1174-20130828|11095_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-33  112.9   1.9    4.6e-33  112.5   1.3    1.1  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    2.4e-17   59.8  17.4    1.5e-13   47.2   3.5    2.2  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    3.8e-05   19.5   4.6    3.8e-05   19.5   3.2    2.0  2  TIGR00845 caca: sodium/calcium exchanger 1
    0.00048   17.3   2.4    0.00048   17.3   1.7    1.9  2  TIGR00378 cax: calcium/proton exchanger
    0.00052   16.7   2.0    0.00052   16.7   1.4    2.7  3  TIGR00846 caca2: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   1.3   5.6e-36   4.6e-33      13     307 ..       3     404 ..       1     409 [. 0.76

  Alignments for each domain:
  == domain 1    score: 112.5 bits;  conditional E-value: 5.6e-36
    TIGR00367  13 ilvivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvltkl.lkrdvsfllvvlillliflldgv.....lesllllvllflyvvylkflvkverkqain.........................................dtlteeqvdenerq...............................................rkqitfllvllivgltllvvgsrllVdsavqiaetlg.iseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallat...........irvkpvavsldalvlvivllllllivvi..lsialkrwlglilla 307
                   l+++++++lv+ l  + + lg sd+ + vT+ a+++ +PE++ s i++l + +d+g g v GS+++    + ++c +   e lvl+ l + rd + +lv l l+++f + g      +es +ll+ + +yvv++ f + v++ + +                                          d++ +++ d+ e +                                               +     +l+ l +++++l+v s    +   +i ++   +    +G ++l +G  lp+ + +++ ar g +  a++    s +  I+v+lg+p+ ++             + +p+   +d+++l +v ++++ ++ +  ++++++r+ + i l 
  MMETSP1174-20130828|11095_1   3 GLAVLCDDWLVPHLNSLQRILGWSDDFAAVTLLAFSSAAPEILISTISTLRGGADVGFGLVCGSALIAFGAIPPVCFFSIGEPLVLSTLlVLRDTTAYLVALGLVTMFYFSGSgkisiYESASLLIYYGAYVVFVIFAIPVQK-RCSRwftskrdpsigdpseldaekvslisgaanmvsdaenisytvDSTEHDNKDDTEDEdescssgswlldlsydllarcftflftwtvpstgdndedgdddsaaaTLPRWHTLLGLGMSFVWLTVLSDACYELVEAICNITSfLDPAALGAVLLSVGAQLPDTLEAIALARSGNHHGAISATFSSQVISITVALGFPWTVYIlmgnsinlssaSETSPSVDVVDYSLLGLVFIVIVTFISVtlRQRKVDRVGAYITLS 404
                  699*************************************************************************9988777777777599********************999**9************************9.444457789999999999999999999999999998888888777333333333333335667777777777777775444444444444444444444444444322223344444444777777665555555555554431345689*************************************************887766666444333334444455677777777766666554311466666766666655 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   3.5   1.9e-16   1.5e-13     469     611 ..       2     150 ..       1     157 [. 0.86
   2 !   18.3   3.1   9.6e-08   7.9e-05    1082    1156 ..     294     369 ..     259     411 .. 0.75

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.9e-16
    TIGR00927 469 valaivcdeyfvpalGvitdklqisedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalfsreilnltwwplfrdvsfyildlimlilffld..sliawweslllllayalyv....ftmkwnkqlelw 611
                  v la++cd+++vp l  +   l  s+d a  t++a   +ape++ s i  +   ++vG G + Gsa+     +   c +   e l l+   ++rd + y++ l ++ +f++     i+ +es  ll+ y  yv    f++   k+  +w
  MMETSP1174-20130828|11095_1   2 VGLAVLCDDWLVPHLNSLQRILGWSDDFAAVTLLAFSSAAPEILISTISTLRGGADVGFGLVCGSALIAFGAIPPVCFFSIGEPLVLSTLLVLRDTTAYLVALGLVTMFYFSgsGKISIYESASLLIYYGAYVvfviFAIPVQKRCSRW 150
                  78*****************************************************************998877777877678*********************9999998752247**********99987762222455555666555 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 9.6e-08
    TIGR00927 1082 imGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqpvpvssn.Glfcaiv 1156
                    +G  +l+ G+ +pd + ++ +ar G    a+s++  s +  itv l  pw ++ l+     ++ +s+      +v
  MMETSP1174-20130828|11095_1  294 ALGAVLLSVGAQLPDTLEAIALARSGNHHGAISATFSSQVISITVALGFPWTVYILMGNSINLSSASEtSPSVDVV 369 
                   578999***********************************************99985443333333303333333 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.2   4.6e-08   3.8e-05     125     249 ..      23     140 ..      15     206 .. 0.85
   2 ?   -3.2   2.0      0.33   2.7e+02     787     840 ..     298     350 ..     280     416 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.6e-08
    TIGR00845 125 riwnetvsnltlmalGssaPeillsvievvgknfeaGdlGPstivGsaafnlfiiiaicvvviPdGevrkikhlrvffvtaawsvfayvwlylilavfspGvvevweglltllffPltvllayva 249
                    w +  + +tl+a+ s+aPeil+s i  +       d+G + + Gsa   +  i  +c + i  Ge   +  l v+  t+a+ v   + l  ++ ++  G ++++e++  l+++   v++   a
  MMETSP1174-20130828|11095_1  23 LGWSDDFAAVTLLAFSSAAPEILISTISTLRG---GADVGFGLVCGSALIAFGAIPPVCFFSI--GEPLVLSTLLVLRDTTAYLVA--LGLVTMFYFSGSGKISIYESASLLIYYGAYVVFVIFA 140
                  459***********************987754...569*********************9988..8888899999*9999999774..56777778999***************99988886554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.33
    TIGR00845 787 vfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiy 840
                  v++++G+ +Pdt+ +     +      +i     s  + + + +G  w++  + 
  MMETSP1174-20130828|11095_1 298 VLLSVGAQLPDTLEAIA-LARSGNHHGAISATFSSQVISITVALGFPWTVYILM 350
                  5678999*****97654.455556678899999999999*********986543 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.7   5.8e-07   0.00048     219     341 ..       7     130 ..       1     140 [. 0.81
   2 ?   -2.7   1.4      0.69   5.7e+02     200     224 ..     365     389 ..     283     420 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.8e-07
    TIGR00378 219 visellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGsslqialfvaPvlvivgilidvpmdlnfslfelvallvavll..vnaissdGesnwleGvlllaay 341
                  ++ + lv  l+s    lG+s+ f  v +++    a e   + + +l+   d+ ++++ Gs+l ia+   P +   +i  +  ++  + l ++ a lva+ l  + + s  G+   +e + ll  y
  MMETSP1174-20130828|11095_1   7 LCDDWLVPHLNSLQRILGWSDDFAAVTLLAFSSAAPEILISTISTLRGGADVGFGLVCGSAL-IAFGAIPPVCFFSIGEPLVLSTLLVLRDTTAYLVALGLvtMFYFSGSGKISIYESASLLIYY 130
                  57899********************************************************9.89988887666665555555556778899999999755115677888888899998888765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.69
    TIGR00378 200 slsvkvatvvllavtvvvavisell 224
                  s++v     + l+  v+v++is  l
  MMETSP1174-20130828|11095_1 365 SVDVVDYSLLGLVFIVIVTFISVTL 389
                  2222222233334445555555444 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.4   6.4e-07   0.00052     242     369 ..       7     135 ..       4     139 .. 0.78
   2 ?   -0.6   0.1      0.12        98     233     326 ..     262     356 ..     236     364 .. 0.57
   3 ?   -1.3   0.1       0.2   1.6e+02      94     114 ..     365     385 ..     359     415 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.4e-07
    TIGR00846 242 llaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLn..lealelva..lvlsvlltaitlqdGrsnyleGavlLalyviial 369
                  l+ + lv  l+s+   lg+s  f +++l++    a+E + + i  l+   d+  g++ GSal     + p++    + +g++l L   l + ++ a  ++l ++ + + +  G+    e a lL  y ++++
  MMETSP1174-20130828|11095_1   7 LCDDWLVPHLNSLQRILGWSDDFAAVTLLAFSSAAPEILISTISTLRGGADVGFGLVCGSALIAFGAIPPVCF---FSIGEPLVLStlLVLRDTTAylVALGLVTMFYFSGSGKISIYESASLLIYYGAYVV 135
                  67889999******************************************************87777777643...34444444332245555555004555666777888999999999999999887765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
    TIGR00846 233 Lvvativvallaellvstlesvveslg.lskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldL 326
                  L +  + + +l++   + +e + + +  l  a  g +l+ +   +++ + a+ +a       a+   + S + ++++   +  +v +++g++++L
  MMETSP1174-20130828|11095_1 262 LGMSFVWLTVLSDACYELVEAICNITSfLDPAALGAVLLSVGAQLPDTLEAIALARSGNHHGAISATFSSQVISITVALGFPWTVYILMGNSINL 356
                  33334445555555555555555544324456667777777777777777777777777777777777777776666666666677777776666 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.2
    TIGR00846  94 kvevvrasllgsilsnlllvl 114
                  +v vv +sllg +++++   +
  MMETSP1174-20130828|11095_1 365 SVDVVDYSLLGLVFIVIVTFI 385
                  567888888888888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.54
# Mc/sec: 1038.80
//
Query:       MMETSP1174-20130828|11092_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1932.10
//
Query:       MMETSP1174-20130828|11098_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   26.4   0.2    3.6e-05   19.8   0.1    3.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   8.9e-09   3.6e-05     130     217 ..      63     169 ..      16     172 .. 0.73
   2 !    5.1   0.0   0.00024      0.99     130     156 ..     162     188 ..     157     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.9e-09
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasve............arakgdefv.......ksqekdslyhgespLnlaaclasesivsllsedpAdiltadslgntllhl 217
                  +   +l+ A    +  +v++L+e+ga+              a+a g +         + + + s +hg  pL  a   +  siv+ l++ +Ad+++ads gnt lh 
  MMETSP1174-20130828|11098_1  63 NNMLPLHFACNGFQTGTVQMLIENGANACssdnvgntplhfAAARGVANIigllekaSADCNASNKHGATPLHKACIYGHFSIVNRLLKMGADVNAADSDGNTALHF 169
                  44557777777777777777777777765566666666655555555544788876655666778899999999999999999999999999999999999999996 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00024
    TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                   g tal+ A      +i klLle+ga+
  MMETSP1174-20130828|11098_1 162 DGNTALHFASRVGFANITKLLLENGAN 188
                  799**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 851.93
//
Query:       MMETSP1174-20130828|11099_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-39  131.2   0.1    6.5e-38  128.4   0.0    1.9  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    4.8e-18   63.5   0.0    6.6e-18   63.1   0.0    1.2  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
      2e-08   31.7   0.0     0.0002   18.7   0.0    2.5  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    3.9e-08   30.8   0.0    1.4e-07   29.0   0.0    1.7  2  TIGR03611 RutD: pyrimidine utilization protein D
    4.5e-06   24.1   0.0    0.00036   17.9   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0003   17.9   0.0    0.00061   16.9   0.0    1.4  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
  ------ inclusion threshold ------
      0.022   11.9   0.0      0.033   11.4   0.0    1.2  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
       0.04   10.8   0.0      0.087    9.7   0.0    1.5  1  TIGR01607 PST-A: Plasmodium subtelomeric family


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   0.0   1.3e-40   6.5e-38      16     161 ..      10     168 ..       2     334 .. 0.58

  Alignments for each domain:
  == domain 1    score: 128.4 bits;  conditional E-value: 1.3e-40
    TIGR01249  16 qlyyeesGnPdGkPvvflhGGPGsGt..dee.crkffdpevyrivlldqrGaGkskphai.leen.......ttwdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlrgifllrkkelewlyegg..lasalyPdewerfvdsip 161
                   l+y+  GnP+G Pv+f+hGGPG  +   ++ +  ff+ + +r+v +dqrG+G+s+p     +en       +   + ad+e lre l+i++WlvfGGsWGstl l ya ++P++  +l+lrgi+l  + e+e +y+    l ++    e++ f ++ +
  MMETSP1174-20130828|11099_1  10 SLWYHIWGNPNGIPVIFVHGGPGNCVgdYDGiNAFFFEADRFRVVEVDQRGTGRSQPSVRgHHENmqqyldiSIEMMSADFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLILRGIYLNTPAEFEAIYTRKpfLDNERRLAEFDTFFEVAA 168
                  68999******************86511444255679*******************96541333311111113345679******************************************************99976311233333445666665554 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.3e-20   6.6e-18       7     141 ..       3     145 ..       1     163 [. 0.85

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 1.3e-20
    TIGR01250   7 itldggyvlftkvkeegekikllvlHGGPgssheyleslkellke..gvevilYDQLGsgkSdqPddsd.....ekllt..idrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissmlasipeyvkeln 141
                  ++l gg  l+ ++ ++ ++i+++ +HGGPg+   +++ +++++ e   ++v++ DQ G+g+S+ P+        +++l   i+ + ++ e++re L+ ++  ++g SwG++L + Ya +y+q   gli+ +   + p   + + 
  MMETSP1174-20130828|11099_1   3 LDLAGGISLWYHIWGNPNGIPVIFVHGGPGNCVGDYDGINAFFFEadRFRVVEVDQRGTGRSQ-PSVRGhhenmQQYLDisIEMMSADFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLILRGIYLNTPAEFEAIY 145
                  678899999999999999***********************98777789************95.654334667878875226788899*****************************************999988876555555 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07    0.0002      38     109 ..      49     130 ..      11     143 .. 0.83
   2 !   10.3   0.0   0.00014     0.071     196     250 ..     276     334 ..     268     335 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.8e-07
    TIGR02427  38 kdfrvlryDkrGHGlS..........dvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvl 109
                  ++frv+ +D+rG G+S            +  + sie ++ d  al + lgie+  v+G S G  +++  a r p+r   l+l
  MMETSP1174-20130828|11099_1  49 DRFRVVEVDQRGTGRSqpsvrghhenMQQYLDISIEMMSADFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLIL 130
                  689************965444433211223468*******************************************998887 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00014
    TIGR02427 196 tlviaGdeDgstPpelvreiadlvpgarf...aeieeaaHlpnleqp.eafaallrdfl 250
                  t v+ G+ D ++P   +++++++++ a +   a + ea+H++  e+  e++++ + +fl
  MMETSP1174-20130828|11099_1 276 TWVVQGTGDEVCPGIFAQQLVEALAAAGVahrAYFLEAGHVCHSESMkETLKKCVNEFL 334
                  6799****************99999876511156889*******986155677788887 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.6e-10   1.4e-07      37     110 ..      48     130 ..      19     156 .. 0.79
   2 ?   -1.2   0.0      0.45   2.3e+02     199     253 ..     274     328 ..     256     335 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.6e-10
    TIGR03611  37 eqefrvvvyDhrGtgrspeelaedy.........siaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklvl 110
                  +++frvv  D+rGtgrs+  +  ++         si+ ++ad  +l + l+ie+  v G + G+ +gl+ a r+p+r   l+l
  MMETSP1174-20130828|11099_1  48 ADRFRVVEVDQRGTGRSQPSVRGHHenmqqyldiSIEMMSADFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLIL 130
                  589*************987665322111222333899***************************************8877765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.45
    TIGR03611 199 lpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellld 253
                   ++ ++    D + P   +++L e+L  a +   +y   a  v ++e+++e+l +
  MMETSP1174-20130828|11099_1 274 FKTWVVQGTGDEVCPGIFAQQLVEALAAAGVAHRAYFLEAGHVCHSESMKETLKK 328
                  5666777777888888999999999999998888888888888888877777765 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.1e-07   0.00036       4     103 ..      23     132 ..      20     139 .. 0.80
   2 ?    4.2   0.0      0.01       5.2     222     251 ..     304     334 ..     265     335 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.1e-07
    TIGR03695   4 vlvlLHGflgsk.edwqalieel..eekfsvlalDLpgHGkskslkekeakdfeeaaqel.......lkelleklkiekviLvGYSlGGRialalaleaperlegliles 103
                   ++++HG  g+   d++ + + +  +++f+v+ +D  g G+s+ + + +++++++ ++          + l e l+ie+  ++G S G  ++l++a ++p+r  glil +
  MMETSP1174-20130828|11099_1  23 PVIFVHGGPGNCvGDYDGINAFFfeADRFRVVEVDQRGTGRSQPSVRGHHENMQQYLDISiemmsadFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLILRG 132
                  5789999988863688888887754589***************888999999988665320101111456777889*******************************976 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.01
    TIGR03695 222 alklevieeaGHnihlenpea.fakileefl 251
                   ++   + eaGH  h e +++ ++k+++efl
  MMETSP1174-20130828|11099_1 304 VAHRAYFLEAGHVCHSESMKEtLKKCVNEFL 334
                  456677889********97652677889887 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-06   0.00061      23     133 ..      14     132 ..       4     149 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
    TIGR03343  23 hyneagegeavimlhgggpgaggwsnyyrnieal..vdagyrvilkdapgfnksdevvmdeqrgl.........vnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmg 133
                  h+    +g  vi++hgg pg +     y  i+a+      +rv+  d  g  +s+  v  +   +         + +     l ++l+ie+  + g s g +  l++a  yp+r   lil g
  MMETSP1174-20130828|11099_1  14 HIWGNPNGIPVIFVHGG-PGNCV--GDYDGINAFffEADRFRVVEVDQRGTGRSQPSVRGHHENMqqyldisieMMSADFEALRECLGIERWLVFGGSWGSTLGLDYAERYPQRCLGLILRG 132
                  5555668999*****85.66543..346667665214457**************99886544333111132211223446789999******************************9*9987 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.4e-05     0.033      94     122 ..     103     131 ..      65     138 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.4e-05
    TIGR02240  94 nvigvswggalaqqfahdyperckklvla 122
                   v g swg +l  ++a  yp+rc  l+l 
  MMETSP1174-20130828|11099_1 103 LVFGGSWGSTLGLDYAERYPQRCLGLILR 131
                  57899********************9985 PP

>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00017     0.087     267     295 ..      18      47 ..       9      57 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00017
    TIGR01607 267 ipkdipllfihs.kddcicyyegvvlfynk 295
                   p+ ip++f+h   ++c+  y+g++ f+  
  MMETSP1174-20130828|11099_1  18 NPNGIPVIFVHGgPGNCVGDYDGINAFFFE 47 
                  599********73589*********99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 972.70
//
Query:       MMETSP1174-20130828|11108_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 715.94
//
Query:       MMETSP1174-20130828|11109_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 819.01
//
Query:       MMETSP1174-20130828|11106_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-126  419.1   0.0   2.4e-126  418.9   0.0    1.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.2e-27   94.6   0.0    1.7e-27   94.2   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.5e-26   91.0   0.0    3.7e-26   89.7   0.0    1.6  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    8.4e-26   88.7   0.0    1.2e-25   88.2   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    5.9e-14   49.8   0.0    2.4e-10   37.9   0.0    2.0  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    5.1e-12   43.1   0.0    5.2e-10   36.5   0.0    2.5  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    7.7e-08   29.8   0.0    1.5e-06   25.5   0.0    2.1  1  TIGR01746 Thioester-redct: thioester reductase domain
    1.1e-06   25.8   0.0    1.6e-06   25.2   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
      2e-06   25.1   0.0    2.8e-05   21.3   0.0    2.0  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    4.4e-05   20.4   0.0    8.6e-05   19.4   0.0    1.4  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    0.00013   19.2   0.0    0.00025   18.3   0.0    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    0.00015   19.4   0.0    0.00024   18.7   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    0.00018   17.8   0.1    0.00029   17.2   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      0.003   14.7   0.0     0.0042   14.2   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0043   14.5   0.0     0.0095   13.3   0.0    1.6  1  TIGR01777 yfcH: TIGR01777 family protein
     0.0058   11.8   0.1     0.0097   11.1   0.0    1.4  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0077   13.8   0.0      0.011   13.2   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.9   0.0  9.8e-129  2.4e-126       2     331 ..      36     372 ..      35     373 .. 0.98

  Alignments for each domain:
  == domain 1    score: 418.9 bits;  conditional E-value: 9.8e-129
    TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit.....evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknat.hliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeegge..sevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklkeg 331
                  +LvtGgaGyiGsh++ +ll++g++ v++Dnl+++  e+lk+++++t     ++ + e d++d  +l+av+ee ++d+ iHfa+l+avgEsv+ PlkYY+nn+ +t+ Ll+++ k+ v++l+Fsssa+vYg++e++pi E+++l+++npYGr+kl +E+il+d++k+++++k++iLRYFn++GA+e+g+iGe++++++ +l++++ +v vg++e+l++fG dy+t+DGt+vRDy+Hv Dla +H++++ +l e +e   e+ nlG+gqg sv+++++ +++++gk+i+++la+rR+GD+as++ d+s+++r lgw+++++ L e+++++ +W++ +++g
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESLKRVRELTgcreeDLIFREVDITDVDSLDAVFEEFNFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHDVRRLVFSSSATVYGDPESLPIDESAALTATNPYGRTKLFIEEILRDVAKTNSDWKIMILRYFNPIGAHESGRIGEDPEGIPnNLMPYISQVSVGRLEQLSVFGSDYDTPDGTGVRDYVHVVDLAVGHVKSIAKLREMSEgcCEAVNLGTGQGLSVLDLVKGMEEATGKPIPYKLAPRRPGDVASCYCDPSHARRILGWTAERG-LSEMCRDTSNWQSANPNG 372
                  8*******************************************999998889999*********************************************************************************************************************************************9****************************************************998553379************************************************************.*************99987 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0     7e-30   1.7e-27       2     319 ..      36     374 ..      35     376 .. 0.83

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 7e-30
    TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdled.....eerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevr.llhistDevyGdlekddaeftettplaPssPysaskaasdllvrayarty.glpvlitrcsnnyGpyq..........fpekliPllitnalag..kklpvyG......dGqqvrDwlyveD....hcraielvlekgr.vgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWyleneswwr 319
                  +LvtGGaG+iGs     +l+  ++   v +D+L   +  e+lk +++     ee + f ++di+d + ++ +++e + d  ++fa    v +s+  p ++ + n+ Gt  ll  + k  ++vr l+  s   vyGd e+    + e+ +l+ ++Py  +k   + ++r  a+t  + +++i r  n  G+++           p+ l+P ++ ++  g  ++l v+G      dG+ vrD+++v D    h+++i  + e ++   e  n+g+++  ++l++vk + e  +k     +    rpG+      d s+ +r Lgw+ +  + e  r t +W  +n + +r
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQK--AVIVDNLVN-SDVESLKRVREltgcrEEDLIFREVDITDVDSLDAVFEEFNFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDK--HDVRrLVFSSSATVYGDPESL--PIDESAALTATNPYGRTKLFIEEILRDVAKTNsDWKIMILRYFNPIGAHEsgrigedpegIPNNLMPYIS-QVSVGrlEQLSVFGsdydtpDGTGVRDYVHVVDlavgHVKSIAKLREMSEgCCEAVNLGTGQGLSVLDLVKGMEEATGKPI-PYKLAPRRPGDVASCYCDPSHARRILGWTAERGLSEMCRDTSNWQSANPNGYR 374
                  79******************7754..477899975.556666666542223257889*******************************************************99999..45554999*********9998..579**************************99736899*******99988633322222224667888654.4444422799***97777777**********9965556677776666554246899*****************99999754.5688999****99999****************************999977665 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   1.5e-28   3.7e-26       1     295 [.      36     352 ..      36     354 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 1.5e-28
    TIGR04180   1 vlvtGadGfiGshlvealvekGaevral.vlyns.fnswGwldevekevkkeievvlGdirdaesvkkavkg..vdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyrs.felPvaivrPfntyGPrqsara.....viPt....iitqilsgk.kkikl.GslsPt......rdfnyvkdtvegfia....vaesdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpk 295
                  vlvtG  G+iGsh   +l+++G++   +  l ns ++s   + e++   ++++     di d +s+ ++ ++   d  +h+a l a+  s   p  y + n+ Gt+ +l    +++v+++v +s++ vyG  + +Pide+  l+a  Py  +k+  +++     ++  +  ++i+r fn  G   s r       iP      i+q+  g+ +++++ Gs   t      rd+ +v d + g ++    + e ++   e +n+g+++ +s+ d+vk ++e+ gk +  +   +  rP   +v   ++d s++++++gw+++
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVdNLVNSdVESLKRVRELTGCREEDLIFREVDITDVDSLDAVFEEfnFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHDVRRLVFSSSATVYGDPESLPIDESAALTATNPYGRTKLFIEEILRDVAKTnSDWKIMILRYFNPIGAHESGRIgedpeGIPNnlmpYISQVSVGRlEQLSVfGSDYDTpdgtgvRDYVHVVDLAVGHVKsiakLREMSEGCCEAVNLGTGQGLSVLDLVKGMEEATGKPIPYKLAPR--RP--GDVASCYCDPSHARRILGWTAE 352
                  89********************974333122333134455566666666777877889999*999999998622689*******************************************************************************999988876526899****************96333333664222247788777534555336543222233449*******87766543111667778899**************************998877665..45..57999**************875 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0     5e-28   1.2e-25       1     268 [.      36     323 ..      36     337 .. 0.76

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 5e-28
    TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkge.....kllnlkdeeiadyidkeellerleke....elkkveavfHeg...AisdTteldgellmenNyeyskellelcaekev.kliYASSAavYGdseeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehK.....gkmaSvvfklfnq..ikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllek.....keksGifnvGtgkarsfndlaaavvkalgkdekiey 268
                  ++vTGgaG+iGs    +l ++g+ + ++vD+l +++     ++++l++++  d i +e  ++ + +     e  +++  +H +   A+ + ++l  ++  +nN+  + +ll+l  +++v +l++ SSA+vYGd e+   +e+      N Yg  Kl+++e++r  v+k++++ +++ lryFN  G +E+ +     + +   ++  ++q  + + +++ +F s  ++ dG  +RD+v+v D +   ++ ++k     +  +   n+Gtg+  s  dl++ + +a+gk   i y
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQ-KAVIVDNLVNSDveslkRVRELTGCREEDLIFREVDITDVDSLdavfEEFNFDSCIHFAglkAVGESVALPLKY-YDNNIGGTVALLSLLDKHDVrRLVFSSSATVYGDPESLPIDESAALTATNPYGRTKLFIEEILR-DVAKTNSDWKIMILRYFNPIGAHESGRigedpEGIPNNLMPYISQvsVGRLEQLSVFGSDYDTPDGTGVRDYVHVVDLAVGHVKSIAKlremsEGCCEAVNLGTGQGLSVLDLVKGMEEATGK--PIPY 323
                  69*****************9995.56689**9996666677999****9999999888766655543333667899*****98333555555555554.79*************999983589*********99988888888888****************9.677999999**************986543221223333344444401456678889*********************86544443332110012344568***************99999885..4555 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0     1e-12   2.4e-10       6     162 ..      35     192 ..      31     209 .. 0.81
   2 !    9.8   0.0   0.00034     0.081     223     331 ..     264     367 ..     259     373 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1e-12
    TIGR02622   6 kvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlf.ellklakklkd..ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalGGhDpYsaskaaae 162
                   vlvtG  G+ Gs   l L + G + +     ++++ +    + +l+ + ++    +  di+d ++l++++ee++ +  +h+a    v +s + Pl+ ++ n+ Gtv ll  + +++ v+ +v   s  vY + e+     e+ al   +pY   k  +e
  MMETSP1174-20130828|11106_1  35 YVLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESLkRVRELTGCREEdlIFREVDITDVDSLDAVFEEFNFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHD-VRRLVFSSSATVYGDPESL-PIDESAALTATNPYGRTKLFIE 192
                  69*********************886555444444433330333344333332245678****************************************************999887.7888999999***998875.6789999999999988886655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00034
    TIGR02622 223 avrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWyk 331
                   vr + hv++   G+++   kl e ++ + ea n+G  +    +v +lvk ++e++ gk + ++   ++++p +      d ++a++ lgw+++ +l+e  + t +W  
  MMETSP1174-20130828|11106_1 264 GVRDYVHVVDLAVGHVKSIAKLREMSEGCCEAVNLGTGQ--GLSVLDLVKGMEEAT-GKPIPYK--LAPRRPGDVASCYCDPSHARRILGWTAERGLSEMCRDTSNWQS 367
                  689999******************************887..889999998877766.5555555..577899***********************************76 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.1e-12   5.2e-10       3     175 ..      36     220 ..      34     224 .. 0.77
   2 ?    3.9   0.0     0.019       4.5     203     255 ..     268     326 ..     263     365 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.1e-12
    TIGR03466   3 vlvtGatGFvGsavvrllleeGee...vrvlvrktsdr....rnleeldvE...iveGdlkdeaslkkalkG..cealfHvAAdyrl..wakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae..glpvvivnPstPiGprD 175
                  vlvtG++G++Gs+   +ll++G++   v  lv +++++    r+l++   E     e d++d +sl++  +    +  +H A    +   ++ p + y++n+ gt a+l+   +++v+r+v++ss ++ g   +  + de+  ++++    +Y r+k+  E++++++a+   + +++i+    PiG ++
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKaviVDNLVNSDVESlkrvRELTGCREEdliFREVDITDVDSLDAVFEEfnFDSCIHFAGLKAVgeSVALPLKYYDNNIGGTVALLSLLDKHDVRRLVFSSSATVYG-DPESLPIDESAALTAT---NPYGRTKLFIEEILRDVAKTnsDWKIMILRYFNPIGAHE 220
                  8*********************984334456655544311113444444443223467999*****9999862257899**9987773356789999*************************99987777.6666899998877665...5899************99985677899*9999***9875 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.019
    TIGR03466 203 lvdvddvaegHllAlerGr.....iGerYiLG.genltlkqlleklaeitglkapklkl 255
                   v+v d a gH++ + + r       e   LG g+ l++ +l++ ++e tg+++p    
  MMETSP1174-20130828|11106_1 268 YVHVVDLAVGHVKSIAKLRemsegCCEAVNLGtGQGLSVLDLVKGMEEATGKPIPYKLA 326
                  69**********99887442111134667777468899999999999999999986554 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.3e-09   1.5e-06       2     204 ..      36     224 ..      35     228 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6.3e-09
    TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhngAlVnf...vqpYeeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglat.GYaqSKwvaEllvreasdr..glpvtivRpGrilgdsetGai 204
                  vl+TG  G++G +   eLl+   +  vi     +s+ + l+R+re    ++ +ee+l+ + + +   d         + ++   + ++d  +h ++l  +   v+   +    N+ gtv++l l  ++  + l++ S++ v+ +        ++ +++++ +  at +Y+++K   E ++r  +++    +++i+R  + +g+ e+G+i
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAG-QKAVIVDNLVNSDVESLKRVREL---TGCREEDLIFREVDITDVD---------SLDAVFEEFNFDSCIHFAGLKAVgesVALPLKYYDNNIGGTVALLSLLDKHDVRRLVFSSSATVYGD-------PESLPIDESAALTATnPYGRTKLFIEEILRDVAKTnsDWKIMILRYFNPIGAHESGRI 224
                  9********************8.55555433344455689999986...6899999998777777666.........7777777889******99875520013333455689****************************997.......44555554444433339*************9988878999*****9998888888876 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.7e-09   1.6e-06       2     140 ..      36     200 ..      35     214 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6.7e-09
    TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrs.........................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgal.lvhiSTDYvFDGekkrpYreedetnPlnvYgqsKlaGEvavraase 140
                  +l+tG++g +g++   +l + g++ v +++                          ++d++d ++l  +++e++ d  ++ a   +V ++   + k y  N  +t +l  +  +++++ lv+ S   v+   ++ p  e+++    n Yg++Kl  E + r++ +
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVDNLvnsdveslkrvreltgcreedlifrEVDITDVDSLDAVFEEFNFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHDVRrLVFSSSATVYGDPESLPIDESAALTATNPYGRTKLFIEEILRDVAK 200
                  89***********9999999888888888777899*********************************************************************************96377788889998899*********************99999888765 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   2.8e-05       4     333 ..      37     361 ..      34     366 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.1e-07
    TIGR01472   4 litGitGqdGsylaelllekgyevhGlirrsssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnprspyaaaklyayyivvnyreayglfavnGi.lfn....hesprrGet..fvtrkitravakialgleeklylGnlda.krdwGyakdyveamwlmlqqdkpddyviatgettsvrefvevsfelvg....itlewkdkgikevglikevgk.vvveidkryfrptevdlllGdatkakeklgwkrevslkelvke 333
                  l+tG +G  Gs+ +  ll+ g +   ++    + + e l+ + e +  +e+ l +   d+td  sl  + ee + +    +a    v  s  +p    d +  Gt+ ll  + + d     r   +s++ +yG+ ++ p +e++ +    py+ +kl+   i  +  ++ + + +  +  fn    hes r Ge+   +   +   ++++++g+ e+l++   d    d    +dyv+++ l + + k     i       +re+ e + e v+    + l+  d     +g+ +++gk +  ++ +r  rp +v     d++ a++ lgw  e +l+e+ ++
  MMETSP1174-20130828|11106_1  37 LVTGGAGYIGSHTCLELLNAGQKAV-IVDNLVNSDVESLKRVRELTGCREEDLIFREVDITDVDSLDAVFEEFNFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHDV---RRLVFSSSATVYGDPESLPIDESAALTATNPYGRTKLFIEEILRDVAKTNSDWKIMILrYFNpigaHESGRIGEDpeGIPNNLMPYISQVSVGRLEQLSVFGSDYdTPDGTGVRDYVHVVDLAVGHVKS----I-----AKLREMSEGCCEAVNlgtgQGLSVLD---LVKGMEEATGKpIPYKLAPR--RPGDVASCYCDPSHARRILGWTAERGLSEMCRD 361
                  7888888888888888888776543.44444555666666666666666677999999******************************99999977777777799999987766555...4556689999****************************99988877766655544433135455559****9996336889999999******999998755554055666789999998776544332....2.....22333333333333300002222222...23477777787344555555..999999999999999999999999999888765 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.6e-07   8.6e-05       4     171 ..      33     218 ..      30     222 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.6e-07
    TIGR03589   4 nksilitGgtGsfGkkfikkllekykvkkii...iysr.delkqfelqqkfeedklrffiGdvrdkerleraled..vdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst............dk..aanPvnlyGatklasdklfvaannisGekktrfsvvryGnvvGs 171
                  ++ +l+tGg+G  G +   +ll+  +   i+   + s  + lk+++  +   e+ l f   d+ d + l + +e+   d  +h a lk v  +   Pl     ni G+  ++    +++v+++v  s+            d   a +  n yG tkl  + ++      + +++ +  + ry n +G+
  MMETSP1174-20130828|11106_1  33 SSYVLVTGGAGYIGSHTCLELLNAGQKAVIVdnlVNSDvESLKRVRELTGCREEDLIFREVDITDVDSLDAVFEEfnFDSCIHFAGLKAVGESVALPLKYYDNNIGGTVALLSLLDKHDVRRLVFSSSatvygdpeslpiDEsaALTATNPYGRTKLFIEEILRDV--AKTNSDWKIMILRYFNPIGA 218
                  6679******************987654443222444314577777777778899******************9733689********************************9988999*9999655322222111111122113344567777777777765443..34556677777777777776 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.1e-06   0.00025       5      70 ..      35     104 ..      31     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.1e-06
    TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekgg.kaeav...avditdrasvdaa 70 
                   ++vtgg+g ig+ +c+ + + g k  ++d   ++  +  +++re  g + e +    vditd +s+da 
  MMETSP1174-20130828|11106_1  35 YVLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESLKRVRELTGcREEDLifrEVDITDVDSLDAV 104
                  589**********************9999988888888888999866624443323369****9999875 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.9e-07   0.00024       4      72 ..      37     108 ..      35     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.9e-07
    TIGR01829   4 lvtGglgGiGtaickrlakdGyk..vvanvap.neerakewlqekevegfdvavvkadvssfeeakaavakv 72 
                  lvtGg g iG+  c +l ++G k  +v n+++ + e+ k++ + ++ ++ d+++ ++d++++++  a++++ 
  MMETSP1174-20130828|11106_1  37 LVTGGAGYIGSHTCLELLNAGQKavIVDNLVNsDVESLKRVRELTGCREEDLIFREVDITDVDSLDAVFEEF 108
                  8********************98434566665578888999999*******************999888765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06   0.00029     416     497 ..      35     122 ..      28     131 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-06
    TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGa..dkavalkldvtdeeavkaafae....valayGGvdiv 497
                   +lvtGga+ iG+ +++ l + G   v++d   ++  +  + + +  G   +  +  ++d+td +++ a+f+e     ++ + G+ +v
  MMETSP1174-20130828|11106_1  35 YVLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESLKRVRELTGCreEDLIFREVDITDVDSLDAVFEEfnfdSCIHFAGLKAV 122
                  579**********************9999976666555556666666641133445689********999997111135567776665 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05    0.0042       4      76 ..      36     108 ..      33     138 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
    TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeagg...evlalkadvtkeeeiadlieavaaef 76 
                  +lvtG a+ ig +   el +aG k v++d   + + e++++  e +g    + +  ++d+t+ ++++ +     +ef
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVDNLvNSDVESLKRVRELTGCreeDLIFREVDITDVDSLDAV----FEEF 108
                  89********************98776664436666666666555555111566678899988876644....4444 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     4e-05    0.0095       1     128 [.      36     176 ..      36     211 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4e-05
    TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..............aeee......alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee 128
                  vl+tGg G iG++ + el ++g++ vi+    ++  e+  ++++e +                   +      +  ++d +i+ aG + + +  + +   + ++  i  t al++l++k +  ++ l+ +s+ ++Yg+ e+ +++e++
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESL-KRVRELTGCreedlifrevditdV--DsldavfEEFNFDSCIHFAGLKAVGE--SVALPLKYYDNNIGGTVALLSLLDKHD--VRRLVFSSSATVYGDPESLPIDESA 176
                  79*****************99999888766655444444.222233322234566666555441..1455555667899*******999977..556666789***************999..556888888899**99999999886 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0     4e-05    0.0097     966    1023 ..      27      81 ..       9     179 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4e-05
    TIGR03443  966 elaaeeevtvfltGatGflGsfilrdlltrrkssslkvvahvrakseeaglerlrkag 1023
                   +++++e+  v++tG++G++Gs+   +ll+   ++   v+     +s+ ++l+r+r+ +
  MMETSP1174-20130828|11106_1   27 STDTTESSYVLVTGGAGYIGSHTCLELLNAG-QK--AVIVDNLVNSDVESLKRVRELT 81  
                   567788899********************98.33..3444444456677899999854 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.7e-05     0.011       1      70 [.      36     108 ..      36     118 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.7e-05
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeag...vkaaavkldvsdeeevkelveev 70 
                  +lvtG++  iG+ + ++l ++g+k vi ++  ++ +e+l+   + +g    + +  ++d++d +++++++ee+
  MMETSP1174-20130828|11106_1  36 VLVTGGAGYIGSHTCLELLNAGQKAVIVDNLVNSDVESLKRVRELTGcreEDLIFREVDITDVDSLDAVFEEF 108
                  69*********************9999887666666666554444441115677889**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.59
# Mc/sec: 843.39
//
Query:       MMETSP1174-20130828|11110_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 168.65
//
Query:       MMETSP1174-20130828|11112_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       451  (0.109946); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|11117_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 760.88
//
Query:       MMETSP1174-20130828|11119_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1214.98
//
Query:       MMETSP1174-20130828|11122_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.65
# Mc/sec: 1053.88
//
Query:       MMETSP1174-20130828|11126_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.49
# Mc/sec: 167.01
//
Query:       MMETSP1174-20130828|11123_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          8    1.8  34.1        9.4    1.6  23.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  23.6    0.0023       9.4     751     928 ..       2     183 ..       1     189 [. 0.76

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0023
    TIGR02168 751 laqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslek..eiaalekeleeleeqieeleeeiesleaeieeleeeleelee.eleellkekasleealae.lreeleelseelrelekkvkelereleelreklaq 928
                  +++le+e +el+++r+e e+++e++    +++e+e ++l ++ ++l+ +lk+ +++    ++e++ e k  ++  ++rl+ +e+  ++aal+k++e +++ +++ ++e++ +e e+e++ ++++++++ +l++l+++ka++e+a ++ lr+  +e++ +  + e +++e++r++ e+++++ +
  MMETSP1174-20130828|11123_1   2 IERLEREATELAQKRAEFESKREQELRFVDTQEKEAAKLATKRAELELKLKQKEATTLINKMEAEdEVKLPFR-RRTRLAGIERarKAAALKKSAEAAAAPKATGAQEAAPAELEVEKAAAKRDAARKvDLTKLEADKAAAEAAGSAaLRNPAKEAEPSKSAEEAAAEEAKRKYLEKKQQHRR 183
                  6789999999999999999999999999999999999999999999999999999999999999956666665.5778888775226778899*************************99998855443899999988887776554044444455544555555555666665555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 460.76
//
Query:       MMETSP1174-20130828|11124_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1343.18
//
Query:       MMETSP1174-20130828|11127_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 722.64
//
Query:       MMETSP1174-20130828|11129_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   13.9   0.1     0.0075   13.4   0.1    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.8e-06    0.0075      44      87 ..       2      46 ..       1     107 [. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.8e-06
    TIGR00599 44 CsHtFCslCiRrcLseep.kCPlCraedqEskLRknfvveEives 87
                 C+   C  CiR+ L+e   +CPlC       +L  n  ++  +++
  MMETSP1174-20130828|11129_1  2 CGESTCDSCIRKALQESNyMCPLCNHRVSPDQLAPNLGLRRQIDT 46
                 99999*********986439****999888888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1345.44
//
Query:       MMETSP1174-20130828|11128_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1117.19
//
Query:       MMETSP1174-20130828|11133_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|11134_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 288.95
//
Query:       MMETSP1174-20130828|11130_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1366.73
//
Query:       MMETSP1174-20130828|11135_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1174-20130828|11131_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-33  114.7   0.6    1.1e-30  105.0   0.9    2.8  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.9e-33  112.6   0.6    1.7e-30  104.0   0.4    2.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.3e-27   94.0   1.5    1.2e-24   85.2   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.2e-24   83.1   1.2    9.8e-24   81.5   0.8    1.6  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    9.9e-24   82.0   0.7    1.9e-23   81.1   0.5    1.4  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.2e-23   79.6   2.4    1.2e-20   71.9   1.7    2.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      6e-18   63.0   0.9    9.8e-14   49.2   0.0    2.3  2  TIGR02415 23BDH: acetoin reductases
    5.7e-17   59.7   2.8      1e-14   52.3   1.9    2.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    8.3e-13   46.1   4.5    1.4e-10   38.8   3.2    2.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    4.9e-10   36.9   0.7    5.8e-06   23.6   0.0    2.4  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    3.4e-07   27.7   0.2    9.7e-07   26.3   0.1    1.7  1  TIGR01500 sepiapter_red: sepiapterin reductase
      1e-05   22.6   0.2    6.2e-05   20.0   0.1    2.1  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0002   18.5   0.2    0.00072   16.6   0.0    2.0  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
      0.003   14.5   0.0     0.0075   13.2   0.0    1.6  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.022   11.4   0.0      0.046   10.3   0.0    1.5  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         1   2.8e+02      97     118 ..      24      45 ..      18      73 .. 0.86
   2 !  105.0   0.9     4e-33   1.1e-30       1     221 [.     310     557 ..     310     566 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1
    TIGR01830  97 eedwdevikvnLkgvfnvtkav 118
                  e+d+d ++ vnL+g+ ++ +++
  MMETSP1174-20130828|11131_1  24 ETDFDLCMGVNLHGTMHLLESA 45 
                  789***********99988766 PP

  == domain 2    score: 105.0 bits;  conditional E-value: 4e-33
    TIGR01830   1 alvtGasrgiGkaiakkla...................kegakvviterskeekaeelaeelke....agvka..aavkldvsdeeevkelveeveeelgeidilvnnAGitrDklll.rmkeedwdevikvnLkgvfnvtkavlkkmikk..rsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLas 221
                  +lvtG++ giG+a+a++la                   +++a v++ + ++++ +ee+ae +++    +g ++  ++  +++++e++v++l++e+++++g++d+l nnAG+    +++  m+ +dw++v+++nL+++f+v+k++   m  +  + Gri+n +sv +++   g a Y+asK G+ gltks+a +  + ni +  +  G + + + +++++ + ++  + +p  r+ ++++ a+av ++as
  MMETSP1174-20130828|11131_1 310 VLVTGGGTGIGRAVALRLAdgswcpqednsaqsdetttNKAAVVIVLTGRRSDPLEETAEMIRAdaalRGENVstMVWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSPMMIsDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQapQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNVVSAISASMESGMPQADGTLMPEPRM-DVKDAASAVHYMAS 557
                  69*************99983333333332222222221234556666667777777777766653333455550055679*******************************988776637**************************998873358*******************************************************************999999999998.57899999999998 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.4   6.1e-33   1.7e-30       2     183 ..     308     518 ..     307     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 6.1e-33
    TIGR01963   2 kvalvtGaasGiglaiakela....................aaGakvvvndle....eeaaeaaakeleeagg..evlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhv.apieefptekfekiiavnltsafhtiraalpimkkq..gwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyv 183
                  +v+lvtG ++Gig+a+a +la                    +a + +v+++ +    ee+ae ++++++ +g   +++  +a++t+e+++++l ++++++fg+ld+L nnAG+      i +   ++++++++ nlt+afh+ ++a+  mk q  + Gri+n +sv +       +aY a+KHg++GltK++Al++ + +i +  i  g v
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLAdgswcpqednsaqsdetttnKAAVVIVLTGRRsdplEETAEMIRADAALRGEnvSTMVWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSpMMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQapQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNV 518
                  899**************99984444443333322222222122334555666655555566655555555555005566789*******************************9762679*******************************9844578********************************************998876665 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0019      0.52       1      23 [.     308     330 ..     308     357 .. 0.85
   2 !   85.2   0.0   4.3e-27   1.2e-24      37     223 ..     367     557 ..     345     563 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0019
    TIGR01829   1 rvalvtGglgGiGtaickrlakd 23 
                  rv lvtGg  GiG+a++ rla+ 
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLADG 330
                  799****************9864 PP

  == domain 2    score: 85.2 bits;  conditional E-value: 4.3e-27
    TIGR01829  37 rakewlqekevegfdv..avvkadvssfeeakaavakveaelGpvdvlvnnaGitrd.avfkkmtkeqWeevidtnlnsvfnvtrpviegmler..gfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflas 223
                  +a+ +  + +++g +v  +v  a+++s ++ ++ +++++   G++d+l nnaG+     ++  m+ ++W++v+dtnl++ f v+++ +  m+ +  + Gri+n  sv     + G a y+a+k G++G+tk++a +g + +++   i  G +  ++ ++++  + ++  + +P  r+   ++ a+av ++as
  MMETSP1174-20130828|11131_1 367 TAEMIRADAALRGENVstMVWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSpMMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQapQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNVVSAISASMESGMPQADGTLMPEPRMDV-KDAASAVHYMAS 557
                  455555555555555511577889******************************876267899*************************9999883347*****************************************************************9999999999999976.567999999987 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.8   3.6e-26   9.8e-24     411     594 ..     304     513 ..     290     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 3.6e-26
    TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava.............................lkldvtdeeavkaafaevalayGGvdivvnnaGiavskpl.eeteleeWdlnldilatGyflvareaarllrkqg.lggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntv 594
                    arrv+lvtGg++GiGr+va+rl+d   +    d  a++ e++ ++        ++++                               +++t+e+ v++ f+e+ + +G +d++ nnaG+  s+ +  + +l++W+  +d + t  f va+ea+ l++ q+  gg +v  +s+ +   + ++ ay+a+k     l + +a+++  + i    +
  MMETSP1174-20130828|11131_1 304 VPARRVVLVTGGGTGIGRAVALRLADGSWC-PQEDNSAQSDETTTNKAA----VVIVLTgrrsdpleetaemiradaalrgenvstmvWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSPMMiSDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQApQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQI 513
                  559*********************975544.444443333333322211....112222222245566678888999999999999866799********************************987516667*****************************85699************************************998887766555 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.5   6.9e-26   1.9e-23       4     204 ..     308     523 ..     306     572 .. 0.74

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 6.9e-26
    TIGR03971   4 kvalitGaarGqGraeavrlaa......eGadiiaidlceplsdvvtypaatred.ldetaklvea....lGrkv..larkadvrkleelravveegveefGrldvvvanaGvl.sygrafelseeqWdtvldvnlkGvWktvkavvPali.erknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtami 204
                  +v l+tG   G Gra a+rla+      e     + +  ++ + vv   ++ r d l+eta++++a     G  v  ++  a++ + +++++  +e   +fGrld++ +naGv  s   + ++s ++W +v+d+nl+ ++++ k +   +  ++ +GG i+  +sv++     g+a y+a+khG++gltk++a++    +i    i    v  a+ 
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLADgswcpqEDNSAQSDETTTNKAAVVIVLTGRRSDpLEETAEMIRAdaalRGENVstMVWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNcSPMMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKtQAPQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNVVSAIS 523
                  89******************962222112222223344555555555555555555********98333335555114455788888888888999999**************625567889***********************99999615679**************************************9999999887777666655443 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   1.7   4.3e-23   1.2e-20       6     187 ..     308     519 ..     305     534 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 4.3e-23
    TIGR01832   6 kvalvtGantGlGqgiavgla....................eaGadivgvg.ise.lsetqekveal....Grkflslk..adladeeaakalvdeaveeagkidilvnnaGiirre.davefsekdwddvlnvnlkavfllsqavakkllkqG.rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyle 187
                  +v+lvtG  tG+G+++a+ la                    +a   iv +g +s+ l+et+e + a     G++++++   a+l++e+++++l de+  ++g++d l nnaG+        ++s kdw +v+++nl a f +++++   +  q  + g+i+n  s+ s       ++ytask++v+Gltk++a +  + +i    i  G + 
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLAdgswcpqednsaqsdetttnKAAVVIVLTGrRSDpLEETAEMIRADaalrGENVSTMVwpANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSPmMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQApQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNVV 519
                  67889999999999999888733333333332222222221244455656633333589999997742233777776644489******************************766515679********************9987666655544789***********************************9999999988888777665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.4     9e-05     0.025       1      22 [.     308     329 ..     308     352 .. 0.88
   2 !   49.2   0.0   3.6e-16   9.8e-14      40     181 ..     373     512 ..     361     553 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9e-05
    TIGR02415   1 kvalvtGaaqGiGkaiaerLak 22 
                  +v lvtG++ GiG+a+a rLa+
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLAD 329
                  689*****************95 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 3.6e-16
    TIGR02415  40 takelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalv.tpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.GkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPG 181
                  +   l+ ++   ++  +++++ ++v+++ ++ ++++G ld+l nnaGv+ +   i +++ ++ +++ + n+++ ++  + a   +k +  + G+i+n  s++++      +ay+++k+ v glt++ a +    g +vn  +  
  MMETSP1174-20130828|11131_1 373 ADAALRGENVSTMVWPANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSpMMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQAPQgGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALD----GRAVNIACGQ 512
                  44567777888999999*******************************876256889999***************999999888887765449*******************************887655....5555544443 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   1.9   3.7e-17     1e-14       1     220 [.     310     556 ..     310     575 .. 0.68

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 3.7e-17
    TIGR01831   1 vlvtgasrgigraialklaadgf..eiavhyrsdradaeesvaairaqg.......gnarllkfdvadr.vavrevl.......eadia........ehgayygvvlnagiarda.afpalseedwdavietnldgfynvihplvmpm.irarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkeal.klvpmkrvgkaeevaalaaflm 220
                  vlvtg   gigra+al+la   +  +     +sd++++++++  i+ +g        +a++++ d a r ++v +++       e+d++        + g    +  nag++     +  +s +dw  v++tnl + + v +     m  +a +ggri+   svs      g   y+a+k g++g tk++a++    +i+   i  g + + + a++e+ + +a  +l+p  r+   ++ a+ + ++ 
  MMETSP1174-20130828|11131_1 310 VLVTGGGTGIGRAVALRLADGSWcpQEDNSAQSDETTTNKAAVVIVLTGrrsdpleETAEMIRADAALRgENVSTMVwpanltsEQDVNslfdeikrRFGRLDLLFNNAGVNCSPmMISDMSLKDWSHVVDTNLTAAFHVAKEAFCLMkTQAPQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDYGNVVSAISASMESGMPQADgTLMPEPRMDV-KDAASAVHYMA 556
                  89****************965542222334455555555555555555522222223566777776655222332211111122444431111111134666667899***987615688****************9999987654442799*************************************99998888888888899988888888888888776514578788854.45566666655 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   3.2   5.2e-13   1.4e-10       4     181 ..     308     510 ..     306     538 .. 0.70

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 5.2e-13
    TIGR03206   4 kvaivtgggggiggaicrrfa......e........eg.....akvavl.....dlnaeaaekvaaairekggkaeava..vditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflk.tekaewerliainltgalymhhavlkgmver..kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvc 181
                  +v++vtggg gig a+ +r+a      +        e      a v vl     d   e+ae + a+ + +g +  ++   +++t+++ v+     +++ +g  d+l nnag +    +++     +w +++  nlt a+++ +     m  +  + grivn  s ++ +   g a y+a k g++ ++k++a +      +vn+ c
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALRLAdgswcpQednsaqsdETttnkaAVVIVLtgrrsDPLEETAEMIRADAALRGENVSTMVwpANLTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSPMMISdMSLKDWSHVVDTNLTAAFHVAKEAFCLMKTQapQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGR----AVNIAC 510
                  68999********9999999733333312222222211221112333332222222345566666655566777665542379******************************98766554145678**************99877766655422679*********************************997644....444444 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   6.2e-05     0.017       6      55 ..     308     355 ..     305     373 .. 0.75
   2 !   23.6   0.0   2.1e-08   5.8e-06      27     172 ..     356     502 ..     345     543 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.2e-05
    TIGR03325   6 evvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvg 55 
                  +vvlvtgg++g+gra+  r +a+g+     d+sa+   e  +++++ v+ 
  MMETSP1174-20130828|11131_1 308 RVVLVTGGGTGIGRAVALR-LADGSWCPQEDNSAQSD-ETTTNKAAVVIV 355
                  79*************9988.58999888888887764.444444444444 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 2.1e-08
    TIGR03325  27 aegarvavldksaagleeleaahgdkvvgvegdv..rllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalp..alvasrgsvif.tvsnagfypngggalytaakhavvglvkelaye 172
                    g r   l+ +a+ +++  a  g++v +++  +   + +d +   ++    fg+ld l +nag+    + + d+      + +  v + n+ + ++ +k a+      a +g+ i    s +   p  g a yta+kh v+gl k +a +
  MMETSP1174-20130828|11131_1 356 LTGRRSDPLEETAEMIRADAALRGENVSTMVWPAnlTSEQDVNSLFDEIKRRFGRLDLLFNNAGVNCSPMMISDMSL----KDWSHVVDTNLTAAFHVAKEAFClmKTQAPQGGRIVnNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALD 502
                  556677777777777887788888888777654400444556667789999**************887777666653....346778889999999999876550045566766554156777888999******************9986 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   3.5e-09   9.7e-07       2     197 ..     309     514 ..     308     530 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.5e-09
    TIGR01500   2 lllvtGasrGfGrelaqelakr................lkaegsvlvLlaRndeaLkeskaeie..aevsalsvdl..vsldleaakdvedllkaleesikkeeyeri.llinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleekedvkvLnYapGvlD 197
                  ++lvtG   G+Gr++a +la                       +v+vL +R  + L e+ + i   a   +  v +   +++l +++dv+ l+  ++       + r+ ll+nnaG       + + +s  k   +  d+n+t++  ++ e +  +k        +vn  s+++  p  + a Y ask     + + +al+     + +n a G +D
  MMETSP1174-20130828|11131_1 309 VVLVTGGGTGIGRAVALRLADGswcpqednsaqsdettTNKAAVVIVLTGRRSDPLEETAEMIRadAALRGENVSTmvWPANLTSEQDVNSLFDEIKRR-----FGRLdLLFNNAGVNCSPMMISD-MS-LKDWSHVVDTNLTAAFHVAKEAFCLMKTQAPQGGRIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDG----RAVNIACGQID 514
                  689****************9754557666555444443233457899****************944334444554411578888888887777766544.....4444379999997655444444.44.456678899*******9999999999977678889**********************976655666666555....66666666666 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.3e-07   6.2e-05       3     203 ..     309     515 ..     307     534 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.3e-07
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhy.rrsaeaa...sslaaelnaera....nsavvvkadlsnsa............sllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllik.afaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvap 203
                  + lvtG+   iGr++a +l +  +        +s+e +   ++++  l  +r+    ++a +++ad ++              +  +  + + d   r fGr d+l nna     +p++  d +           + ++++ +n  a + + k af   +  t+a + +    ivn        p  g + yt +k+ + Glt+s al+  + +i    +  
  MMETSP1174-20130828|11131_1 309 VVLVTGGGTGIGRAVALRLADGSWCPQEDNsAQSDETTtnkAAVVIVLTGRRSdpleETAEMIRADAALRGenvstmvwpanlTSEQDVNSLFDEIKRRFGRLDLLFNNAGV-NCSPMMISDMSL-K--------DWSHVVDTNLTAAFHVAKeAFCLMK--TQAPQGG---RIVNNGSVSSTSPRWGSAAYTASKHGVLGLTKSIALDGRAVNIACGQIDY 515
                  6799***************887775443321233333300034455677788733335899999998876677889999986655667888999999************986.578999988776.2........2344556666666666542565544..5555555...59999999999************************998777776655544 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.6e-06   0.00072      69     145 ..      11      99 ..       4     110 .. 0.80
   2 ?   -2.7   0.4         2   5.4e+02       1      20 [.     310     329 ..     310     331 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.6e-06
    TIGR02197  69 avfHegAi.sdTteldgellmenNyeyskellelcae....kevkliYASSAavYGdseeefreekele.......rPlNvYgySKllf 145
                   +fH gA+ s   e+d +l m  N++ +++lle + +    ++ +++ AS+ a+ G+++++  ++k+ +        P  +Yg  K++ 
  MMETSP1174-20130828|11131_1  11 SIFHLGAVmSGQGETDFDLCMGVNLHGTMHLLESARNcgyaSRPRFVMASAGATLGAGADTDFVTKDDTvgdwtraTPHTTYGATKACS 99 
                  69*****8355679******************9987522226779***********988765555555558899999******999875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2
    TIGR02197   1 iivTGgaGfiGsnlvaalne 20 
                  ++vTGg   iG++++ +l +
  MMETSP1174-20130828|11131_1 310 VLVTGGGTGIGRAVALRLAD 329
                  69*****99*****999875 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05    0.0075      98     167 ..      32     108 ..      24     124 .. 0.79
   2 ?   -4.3   0.0       5.8   1.6e+03     213     225 ..     431     443 ..     428     452 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
    TIGR01181  98 etnvvGtytlleavrkelk..evrllhistDevyGdlekdd.....aeftettplaPssPysaskaasdllvrayar 167
                    n+ Gt+ lle++r++    + r++  s+    G   ++d      ++ + t+ +P++ y a+ka s+ll+  y r
  MMETSP1174-20130828|11131_1  32 GVNLHGTMHLLESARNCGYasRPRFVMASAGATLGAGADTDfvtkdDTVGDWTRATPHTTYGATKACSELLLGDYSR 108
                  5799***********975522667********999877766210002345567899***************999987 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 5.8
    TIGR01181 213 qvrDwlyveDhcr 225
                   ++Dw +v D++ 
  MMETSP1174-20130828|11131_1 431 SLKDWSHVVDTNL 443
                  5789999988753 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017     0.046      97     162 ..      34     109 ..      11     135 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
    TIGR01179  97 nvvntleLleamqkagvk...kliFsssaavYgesekv..pisEe.....splnpinpYGrsklmvErilkdlkka 162
                  n+++t++Lle+ ++ g     +++ +s+ a+ g   ++  + +++     +  +p   YG++k+ +E +l d+++ 
  MMETSP1174-20130828|11131_1  34 NLHGTMHLLESARNCGYAsrpRFVMASAGATLGAGADTdfVTKDDtvgdwTRATPHTTYGATKACSELLLGDYSRK 109
                  899******9999988653337*****99999875443113333311111456699****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 1343.05
//
Query:       MMETSP1174-20130828|11137_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|11136_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-53  173.9   9.1    3.4e-08   31.1   0.0   12.7 13  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   2.3e-05     0.096       6      34 ..      27      55 ..      25      56 .. 0.87
   2 !   23.4   0.0   2.3e-09   9.5e-06       1      34 [.      57      90 ..      57      91 .. 0.97
   3 !   10.7   0.0   2.5e-05       0.1       1      29 [.      92     120 ..      92     122 .. 0.93
   4 !   15.7   0.0   6.1e-07    0.0025       6      34 ..     172     200 ..     170     201 .. 0.91
   5 !    3.4   0.0    0.0053        22      13      34 ..     214     235 ..     213     236 .. 0.91
   6 !   15.2   0.0   9.3e-07    0.0038       1      28 [.     237     264 ..     237     267 .. 0.93
   7 !   15.7   0.0   6.1e-07    0.0025       2      35 .]     277     310 ..     276     310 .. 0.95
   8 ?   -0.6   0.0     0.094   3.9e+02       2      13 ..     312     323 ..     311     324 .. 0.88
   9 !    6.8   0.0   0.00043       1.7      20      35 .]     496     511 ..     491     511 .. 0.90
  10 !   31.1   0.0   8.2e-12   3.4e-08       2      35 .]     513     546 ..     512     546 .. 0.96
  11 !   18.0   0.0   1.2e-07   0.00047       1      29 [.     547     575 ..     547     578 .. 0.94
  12 !   13.3   0.0   3.7e-06     0.015       2      34 ..     627     659 ..     626     660 .. 0.91
  13 ?   -1.3   0.0      0.16   6.6e+02       5      21 ..     665     681 ..     662     683 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
    TIGR00756  6 lisglckagrveeAlelfdeMkergivPd 34
                 +++ l+++  ++ Al++f+eM+ +g++P+
  MMETSP1174-20130828|11136_1 27 VMDTLSREEGLRLALSIFQEMLGSGVRPN 55
                 6777888888899***************9 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.3e-09
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPd 34
                 +t+++l++g+ k g++e A+el+  M+ +g++P+
  MMETSP1174-20130828|11136_1 57 ITCTALMDGCLKCGELEIAFELLSYMRHAGLSPS 90
                 69******************************97 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 2.5e-05
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                  +t+++l+  + ++gr e A +l++ M e+
  MMETSP1174-20130828|11136_1  92 ITFTSLLYQCTRQGRAEFAADLLRTMTED 120
                  69************************876 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 6.1e-07
    TIGR00756   6 lisglckagrveeAlelfdeMkergivPd 34 
                  l+  +++a+r+e+A+++++eM+++ +v d
  MMETSP1174-20130828|11136_1 172 LVELFGEANRLEDAFYVLREMLKNHMVVD 200
                  677899******************99988 PP

  == domain 5    score: 3.4 bits;  conditional E-value: 0.0053
    TIGR00756  13 agrveeAlelfdeMkergivPd 34 
                  a+r+e A++l +e +++g+  +
  MMETSP1174-20130828|11136_1 214 ANRLENAVDLVEEFRSEGLHVN 235
                  57999*************9988 PP

  == domain 6    score: 15.2 bits;  conditional E-value: 9.3e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                  vty +l+ ++++ +++ +A+ lf++ ++
  MMETSP1174-20130828|11136_1 237 VTYAALLGACGRVNQLVKAFTLFNQAQA 264
                  7***********************9776 PP

  == domain 7    score: 15.7 bits;  conditional E-value: 6.1e-07
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                   y +l++++  a +   A ++f++M ++g++P++
  MMETSP1174-20130828|11136_1 277 LYRSLMDACRAASDGAAASKVFKSMTSAGVSPTV 310
                  599*****************************85 PP

  == domain 8    score: -0.6 bits;  conditional E-value: 0.094
    TIGR00756   2 tyntlisglcka 13 
                  +y++l+ +l+k+
  MMETSP1174-20130828|11136_1 312 AYTSLLTALSKE 323
                  6********997 PP

  == domain 9    score: 6.8 bits;  conditional E-value: 0.00043
    TIGR00756  20 lelfdeMkergivPda 35 
                  + +f++M++rg+ Pd+
  MMETSP1174-20130828|11136_1 496 FLVFRDMCARGLHPDC 511
                  679***********97 PP

  == domain 10    score: 31.1 bits;  conditional E-value: 8.2e-12
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                  +yn+l+ ++++ag+++ Al++ +eM ++gi Pd+
  MMETSP1174-20130828|11136_1 513 AYNALVVACARAGDLDRALDVVREMTSKGIDPDV 546
                  6*******************************96 PP

  == domain 11    score: 18.0 bits;  conditional E-value: 1.2e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                  +ty++l++ ++  g+ve A+elf+ M+ r
  MMETSP1174-20130828|11136_1 547 ITYTALVKTCGIVGDVERAEELFRVMQQR 575
                  69************************875 PP

  == domain 12    score: 13.3 bits;  conditional E-value: 3.7e-06
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  ty   + ++ k  ++  Al l+++M++r i+Pd
  MMETSP1174-20130828|11136_1 627 TYRYALMACEKLDDWQRALGLLEDMRRREIRPD 659
                  77777889999*********************9 PP

  == domain 13    score: -1.3 bits;  conditional E-value: 0.16
    TIGR00756   5 tlisglckagrveeAle 21 
                  +l++ l ++g+ + A++
  MMETSP1174-20130828|11136_1 665 ALMRVLKRNGKHDIAVS 681
                  699*******9997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1600.08
//
Query:       MMETSP1174-20130828|11141_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1174-20130828|11138_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1297.89
//
Query:       MMETSP1174-20130828|11143_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 948.67
//
Query:       MMETSP1174-20130828|11144_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-15   52.0   0.0    9.7e-15   51.8   0.0    1.0  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
    1.2e-12   44.8   0.0    1.4e-12   44.6   0.0    1.0  1  TIGR01075 uvrD: DNA helicase II
    1.1e-08   31.6   0.0    1.3e-08   31.4   0.0    1.0  1  TIGR01074 rep: ATP-dependent DNA helicase Rep
    3.5e-05   19.6   0.3    8.3e-05   18.4   0.2    1.6  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   9.4e-18   9.7e-15       9     116 ..      25     140 ..      22     141 .] 0.86

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 9.4e-18
    TIGR01073   9 qkeavkttegPLLilaGaGsGktrvLthriahlla..ekkvaPeniLaitftnkaakemkervekllge......vaedlwistfhslcvriLrrdid.kiGlnknfsildesdqks 116
                  qk a++ t   +L++a aG+Gk rvL +++ah  +  e++ a   iL + ft  aa+++ +  +kllg       +   +w +tfh+ + r+L++      Gl  +fsi d++dq s
  MMETSP1174-20130828|11144_1  25 QKGAIESTADAILLVASAGTGKSRVLSSKLAHEYRrsEQSSAAASILVLSFTAPAARQLCNGADKLLGGtdtianNPLRVWHGTFHTFSLRLLQQYPYlGTGL-ASFSIADAADQYS 140
                  999****************************98762267788899**********************9888876666689************98655424444.68********975 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.3e-15   1.4e-12       9     115 ..      25     139 ..      19     141 .] 0.84

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 1.3e-15
    TIGR01075   9 qreavaaplenllvlaGaGsGktrvlvhriawlls.veevs.eysimavtftnkaaaemrkrieellakskr......gmwiGtfhglahrllrahhldaklpedfqildsddql 115
                  q+ a+  + + +l++a aG+Gk+rvl  ++a   + +e+ s   si+ ++ft  aa ++ +  ++ll  + +       +w Gtfh+++ rll+ +    + + +f i d+ dq 
  MMETSP1174-20130828|11144_1  25 QKGAIESTADAILLVASAGTGKSRVLSSKLAHEYRrSEQSSaAASILVLSFTAPAARQLCNGADKLLGGTDTiannplRVWHGTFHTFSLRLLQQYPYLGTGLASFSIADAADQY 139
                  7889999999*********************86541455442679******************99998776666667789*************988555555678********97 PP

>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.2e-11   1.3e-08       6     113 ..      25     139 ..      22     141 .] 0.82

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.2e-11
    TIGR01074   6 qkeaveyveGPllvlaGaGsGktkvivnkiayliekc..gykakkiaavtftnkaaremkervaktlkkkea...kglli..stfhslGldilkkeaealgl.ksnfslfdetdql 113
                  qk a+e     +l++a aG+Gk +v+  k+a+  ++   +  a +i  + ft  aar++ +   k l+ +++   + l +   tfh++ l +l++ +  lg   ++fs+ d+ dq 
  MMETSP1174-20130828|11144_1  25 QKGAIESTADAILLVASAGTGKSRVLSSKLAHEYRRSeqSSAAASILVLSFTAPAARQLCNGADKLLGGTDTianNPLRVwhGTFHTFSLRLLQQ-YPYLGTgLASFSIADAADQY 139
                  899****************************98875411567889********************999876522244555338**********87.5666652478*******996 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   8.1e-08   8.3e-05       6      69 ..      25      91 ..      23     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.1e-08
    TIGR02785  6 QweaivakgqdiLVsAsAGSGKTaVLveRiikkilsg...vdvdrLLvvTFTnaaAkemkerieeal 69
                 Q+ ai +++  iL  AsAG GK  VL  ++ ++  +         +Lv  FT  aA+++ +  ++ l
  MMETSP1174-20130828|11144_1 25 QKGAIESTADAILLVASAGTGKSRVLSSKLAHEYRRSeqsSAAASILVLSFTAPAARQLCNGADKLL 91
                 889****************************99988867677889************9977665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|11139_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   15.5   0.0     0.0064   14.5   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-06    0.0064      21     113 ..     299     391 ..     289     404 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-06
    TIGR00229  21 vdeeGnilyvNrafeeifGYsaeeliGrnvlelip..eedreevrerierrlegerepvseerrvkrkdGseiwvevsvspirdaggelgvvgiv 113
                  + +  +i +vN+++  + G+s++e+ G+ ++ ++   e d e++ e+++++ +  +  +s+ +  ++k+G+ +   v+v p+ +  ++++++ ++
  MMETSP1174-20130828|11139_1 299 ALQPFRIEHVNQSWMNLCGFSHKEVYGQPLRAIHQgiETDNEKITELMNTMHR--KLSHSILTVNYKKSGQPFMNFVRVFPLCTGPDVTHFLYVA 391
                  55667899***********************9664224455555555555544..5566666666789998888888777777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.57
# Mc/sec: 958.06
//
Query:       MMETSP1174-20130828|11149_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 208.98
//
Query:       MMETSP1174-20130828|11152_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|11146_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 849.01
//
Query:       MMETSP1174-20130828|11156_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.8   4.1      0.093   10.5   0.7    2.0  2  TIGR02209 ftsL_broad: cell division protein FtsL
       0.63    7.0   4.6       0.44    7.6   2.3    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        2.2    6.3  11.9       0.25    9.3   1.5    2.4  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
          5    4.0  11.9        1.2    5.9   2.5    2.1  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   9.1e-05     0.093      23      58 ..       7      42 ..       5      46 .. 0.91
   2 ?   -1.3   0.1      0.45   4.6e+02      48      59 ..     156     167 ..     139     170 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.1e-05
    TIGR02209 23 qhqtrqlnselqklqaeieklqkewndLqlEvaels 58
                 +++t  l ++ qk+++e+++l ++++ L+ Ev++l+
  MMETSP1174-20130828|11156_1  7 KSETESLVKQEQKIKEETKELITKIETLESEVKTLG 42
                 678889999*************************97 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.45
    TIGR02209  48 ndLqlEvaelsr 59 
                  + L  Ev+els+
  MMETSP1174-20130828|11156_1 156 ELLDKEVKELSK 167
                  446677777776 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.3   0.00043      0.44     105     212 ..       4     118 ..       1     143 [. 0.77

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00043
    TIGR03752 105 qaleaekkelkkekeqlkeeqakleelldelqkkle....dvaaekesseedlpvglGleegdkaqses...kdevvwvepsdakatdregkksapskesfptsfdnalkrkkka 212
                   ++++e+++l k++++ kee+++l +++++l+++++    d ++++ ss+e + + l  + g+k+   +   +++v+ v+p+  k + r++k  +++ +s+ +++++ lk++ ++
  MMETSP1174-20130828|11156_1   4 AKVKSETESLVKQEQKIKEETKELITKIETLESEVKtlgpDATSKELSSSEKFVIKLKERMGEKDDLIArlkRGSVKDVDPNTGKLKVRSKKDYDGADKSLDSEWSQFLKDAVSN 118
                  6899999***************999999999999998888777888888888888886666666655446779999999999999999998877777777777664444443333 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.5   0.00025      0.25     100     137 ..       4      41 ..       1      63 [. 0.69
   2 ?    2.1   1.7     0.041        43      90     132 ..     138     182 ..     105     191 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00025
    TIGR02894 100 eklrkekeklkeeleslqkrneeLekeleklkkkksvi 137
                  +k+++e e l ++ ++++++ +eL +++e+l+++ +++
  MMETSP1174-20130828|11156_1   4 AKVKSETESLVKQEQKIKEETKELITKIETLESEVKTL 41 
                  45666666666666666666666666666666665554 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.041
    TIGR02894  90 qnlketl.eeaeklrkekeklkeeleslqkrne.eLekeleklkk 132
                  ++l++t+  ++e+++++ e l +e+++l k    +Lek l+ l++
  MMETSP1174-20130828|11156_1 138 KELRKTNiLDTETIKRDFELLDKEVKELSKDLRpDLEKMLQLLQE 182
                  333333303555666677777777777666543256666665555 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.5    0.0012       1.2       2      93 ..      18     115 ..       8     128 .. 0.66
   2 ?    2.1   1.9     0.017        18      15      78 ..     133     199 ..     119     209 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0012
    TIGR01554   2 kelreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea......fraylrrg 93 
                  ++++e+ +el +++++l+++ k    ++  ke  + ++ + kl++++ +  ++ a++++   ++ ++++++ + + +k+   +       + ++l+  
  MMETSP1174-20130828|11156_1  18 QKIKEETKELITKIETLESEVKTLGPDATSKELSSSEKFVIKLKERMGEKDDLIARLKRGSVKDVDPNTGKLKVRSKKDYDGADksldseWSQFLKDA 115
                  56777777777777777777777777777777777777777777777777777666666666666666666665555554444344555555555544 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.017
    TIGR01554  15 lk...kltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeea 78 
                  ++   k+  ++++ ++e+ k++++ l++e+++l ++++   e++ ++ +++  s  ag+  e +++a
  MMETSP1174-20130828|11156_1 133 IEpvmKELRKTNILDTETIKRDFELLDKEVKELSKDLRPDLEKMLQLLQEKGGSAAAGEVGELKRRA 199
                  3344466778888888998899999999999999999988888777666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 644.60
//
Query:       MMETSP1174-20130828|11155_1  [L=885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-147  491.0   1.5   1.9e-147  490.8   1.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.9e-91  304.5   0.8      1e-57  193.4   0.1    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    4.7e-77  257.6   1.7    1.8e-52  176.4   0.0    2.5  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.6e-76  253.6   9.5    5.9e-46  155.3   2.8    3.6  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    8.2e-73  243.6  11.2    2.5e-46  156.1   0.0    3.2  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.2e-70  235.2   4.6    7.5e-46  154.7   0.5    2.8  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.1e-67  226.9   0.1    1.1e-42  144.3   0.0    2.3  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.7e-65  219.0   9.2      7e-41  138.3   0.6    2.5  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.8e-65  218.6   2.9    7.7e-44  147.8   0.0    2.4  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.9e-64  214.6   7.1    2.2e-42  143.0   1.2    3.3  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.4e-64  214.5   0.1    3.2e-37  126.0   0.0    3.3  3  TIGR00958 3a01208: antigen peptide transporter 2
    3.3e-63  211.9   2.7    4.4e-34  115.8   0.0    2.3  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.5e-58  194.4   0.9    6.4e-31  105.3   0.0    2.7  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      2e-51  173.1   4.8    2.9e-34  116.4   0.7    2.7  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.9e-36  123.6   1.9      1e-16   59.0   0.0    4.6  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.2e-36  122.8   0.1    2.5e-21   74.0   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    9.5e-34  114.7   1.0    2.1e-18   64.4   0.0    3.1  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.9e-32  109.8   2.8    4.7e-23   79.7   0.0    2.9  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.4e-31  107.8   2.5    2.8e-22   77.4   0.1    3.7  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.2e-31  105.4   2.2    1.2e-20   71.9   0.0    3.5  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.9e-30  102.9   4.1    3.5e-14   50.7   0.1    3.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.1e-30  102.1   0.1    1.5e-16   58.3   0.0    3.5  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.9e-28   97.5   2.1    7.3e-18   62.6   0.0    3.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.8e-28   96.2  10.0    2.4e-17   60.9   1.6    3.8  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.6e-28   96.1   6.2    4.4e-09   34.0   0.4    4.5  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      6e-28   95.9   4.6    8.3e-14   49.4   0.0    3.0  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      1e-27   95.1   5.3    2.7e-13   47.7   0.1    3.3  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    5.1e-27   92.7   2.0    5.8e-15   53.3   0.3    3.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.3e-25   88.0   5.6    7.2e-12   42.8   0.1    3.6  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.4e-25   87.3   2.1    7.2e-16   56.3   0.0    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.7e-25   87.0   0.3      2e-17   61.4   0.0    3.1  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.2e-25   86.2   1.6    3.4e-09   34.1   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      5e-25   86.0   1.9    1.1e-14   52.2   0.0    3.8  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.7e-25   85.3   8.7    6.3e-12   43.0   1.4    3.5  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.4e-23   79.9   6.8    1.4e-14   51.9   0.2    4.3  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.6e-23   79.9   4.7    2.4e-13   48.2   0.1    2.7  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      2e-22   77.7   3.7    2.5e-15   54.4   0.1    2.9  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.7e-21   74.5   0.2    1.4e-12   45.1   0.0    2.8  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.1e-20   72.0   4.8    5.3e-11   40.3   0.3    3.7  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.3e-19   68.4   1.4      1e-07   29.5   0.0    4.4  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.3e-19   67.2   3.3    3.1e-11   41.1   0.0    3.0  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      1e-18   65.0   0.0    1.1e-09   35.1   0.0    2.4  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.2e-18   64.9   1.5    5.6e-09   32.9   0.0    3.0  2  TIGR00955 3a01204: pigment precursor permease
    1.2e-18   65.4   0.2    2.4e-13   48.1   0.0    2.3  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      2e-17   60.7   5.2      5e-07   26.4   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.1e-16   58.9   0.1    7.2e-14   49.8   0.0    2.9  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.3e-16   55.9   1.4    5.1e-06   23.2   0.2    3.2  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      7e-16   56.4   6.6      2e-10   38.5   0.1    3.9  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      4e-15   53.5   2.9    2.6e-05   21.2   0.0    3.4  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.1e-14   50.5   3.6      2e-10   38.0   0.2    2.8  2  TIGR01288 nodI: nodulation ABC transporter NodI
    4.4e-14   50.4   3.2    7.1e-05   20.2   0.0    4.3  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.6e-11   38.1   0.3    2.8e-06   22.3   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    8.4e-11   38.8   6.6    0.00031   17.1   0.0    3.8  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.4e-10   37.1   0.7      5e-06   22.8   0.1    3.1  3  TIGR00630 uvra: excinuclease ABC subunit A
    1.4e-08   32.3   6.8    1.1e-05   22.8   0.3    3.9  3  TIGR01978 sufC: FeS assembly ATPase SufC
    8.5e-05   19.1   7.8      0.013   11.9   3.0    3.9  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00048   15.6   2.9      0.009   11.4   0.1    3.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0009   16.9   0.7       0.46    8.1   0.1    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00094   15.8   2.6      0.002   14.7   0.1    2.1  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0063   13.3   0.1      0.013   12.3   0.1    1.4  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
  ------ inclusion threshold ------
      0.016   12.2   5.7       0.13    9.2   0.2    2.6  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.033   11.0   0.1        3.7    4.3   0.0    2.9  3  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
       0.11   10.1   2.0        4.8    4.8   0.1    2.3  2  TIGR00152 TIGR00152: dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.8   1.0  2.9e-149  1.9e-147     669    1517 ..       3     862 ..       1     866 [. 0.84

  Alignments for each domain:
  == domain 1    score: 490.8 bits;  conditional E-value: 2.9e-149
    TIGR00957  669 vvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekv..igpkgllknktr...ilvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaigl.fitllsillflcnsvsalasnywlslwtdda.vvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatp..laavi..ilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfa...alfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeyse....tekeapwqi...ee.tappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrkt..kilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqr..gifysma 1517
                   +vg vgcgk+++l a+l+++d + g +++ g + yvpq a+i   ++ +nil+g++l+e++  +vl a  l  dl+ l  g  te+ge+gv lsggq qrvs+ar++y    + l+ddpl+avd +v++ if+ +  +  k   +++ r   i+    +s lp+ d i  + +gk++e g+y+el++    f+ f+++  s++d  da d+  a+ s     a +v +g+     ++ +   +++++s     ts   +  + + + e   ++ +l+++d+   g    +v   + +++g  +   ++++  lc  + a+  +y+l+lw  da   d t +++  r  vy +  +   ++++ +s+  + ggi a r++h ++l   + +p+sf+ertpsg+++ rfs +l +vd  +   +  l   l+n+ + ++v+ +  p  ++ ++  i+  a + + v+r    + r+ kr+   + sp+ +  +e++ g  ++ + +  e    +    +d+ +++ + s     +  +   ++   i   a    l    + +  +a   gl+++ys+ +  +l  +  +++ + t    ++r+ ey       ek+   +    +e     + wp +g++ f + sl yr +l   lr ++  ie g++vg+vgrtg+gkssl + lfri e++ g ++i+  ++a + l  lr+  ++ipq pv ++gs+r nldpf +y+dee  + l  +   + v   p+ l  e    g nls+g+ ql+ larallrk+  kilv+de ta +d+ td+ iq+ ir +f dctv+tiahrl ti+d   +lv+d+ge+ e+++p++ll++r  g+f +m 
  MMETSP1174-20130828|11155_1    3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNLGYVPQTAFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLkrLTVKNDDRQHRRcgiIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAGKGFSIFVQSGLSSKDTDDAPDSLQANTS-----AVEVSNGFQRE-IAEDDNSSRIATVSKAVTSTS-AVEDDEPILVVEPD-ASAQLVKKDHEISGGHSTAVLSTFFQSMGRgYYPGVTCVALLCYATYAF-QDYYLTLWVIDAeTKDLTYDENMQRNYVYISAAMAYILLLVCVSVLNTYGGIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLDDLTHFLWNASAIILVVCILVPptVVPIViaIPFYATILIAVDR----TNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSLISSVAviaLLSNKNTYKDGQAAYAGLALTYSFVIPYFLMLVGLITTMFFTAFTGLQRISEYNTdfvpREKNFGSVTarfDEkKHAQDPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGTTFLRET--LSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDRpeGLFAAMI 862 
                   89**********************************************************************************************************************************976222233322233333325566889*********************************************9999999666555.....56678887654.444444455555555544444.44555666777766.7899999999999999999999999988863456678888899988887.589******9996778899999999***********9*********************************************************999988889999999886665554444331133333112334555555555....89***********************************99999999****8888776655555666666777666554430003333334445577899********99888765555566668999*********863322355433222222441456789****************************************************************************************************************88877644..4558999********************************7669******************************************************************998779999986 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   2.5e-34   1.7e-32     457     644 ..       3     197 ..       1     269 [. 0.85
   2 !  193.4   0.1   1.5e-59     1e-57     929    1442 ..     341     853 ..     327     867 .. 0.85

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 2.5e-34
    TIGR01271 457 vagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktr.......ilvtsklehlkkadkilllhegscyfygtfselqakkpdfssk 644
                  + g+ g+gk+++lm +lg+++   g ++  g + + pq+++im gt+ dni++g   de r t v+ a  leed+  l e   t +ge g+tlsggq  r+s+ar++y    l l+d p++ +dv   + if+s     + n  r       i+   +l  l   d+i ++  g+    gt+ el +    fs  
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNLGYVPQTAFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKNDDRqhrrcgiIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAGKGFSIF 197
                  789*********************************************************************************************************************************9865544555443333455455667899999**********************9998888854 PP

  == domain 2    score: 193.4 bits;  conditional E-value: 1.5e-59
    TIGR01271  929 yiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatnde..gegev...giiltlamnilstlqwavnssidvdglmrsvsrvfkfi.d.lpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllst.egeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilska..killldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllnea 1442
                   y+y++ a + + l +   +   +  +   + +h+++l  ++ ap++  ++  +gri+ rfs d+ ++d  + + l dl  +l      i+vv++l p ++v  +  +  +  + +   rt+++ k++  +a spi++ +  s++g   v ++    +  +     ++      f+  + + + ql + +i  l+ ++v+ ia+++n++  ++g+    g+ lt ++ i   l      +    + +  ++r+  +  d +p+e        k++   +    e+kh+++ wp  g++t +d +  y  + +  l+ +sf++e gqrvg++grtgsgks+ll  l+r++++  g + i+      v lq+ r +  vipq    l+g+ r+nldp+ +y+dee      e    s +   p+ l   +   g  ls g  ql+ lar++l ka  kil++dep+a +d  t + i+  +++ f++ctvi   hr+ ++++ + +lv++  ++ +y s   ll ++
  MMETSP1174-20130828|11155_1  341 YVYISAAMAYILLLVCVSVLNTYGGIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSLI-SSVAVIALLSNKNtyKDGQAayaGLALTYSFVIPYFLMLVGLITTMFFTAFTGLQRISEYNtDfVPRE--------KNFGSVTARFDEKKHAQDPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEAsAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGTTFLRETL--SKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDR 853 
                   77887777777776666666677779999****************************************************99999999*********99987777777788888899********************************9999998888888888888888888888889999****998876.55666777665432267774222667777766665555443333334445566777766631313333........3333445567799**************************************************************9975279*************************************************999888864..455667********************************8779***********************************************************9999998775 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.2     5e-25   3.2e-23     408     558 ..      34     190 ..       2     199 .. 0.88
   2 !  176.4   0.0   2.8e-54   1.8e-52      89     564 ..     371     860 ..     338     865 .. 0.78

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 5e-25
    TIGR02203 408 qvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl.......mkgRttlvia.hRLstiekaDrivvlddGkiverGtheeLlar 558
                  ++ +v q  ++  +t+ +n+  g++  +de ++ ++l+a++l++ + +l+eGl tevGe+g+ LsGGq qR++iaR+l+    ++++D+  +a+D    R + ++L+rl       ++ R +++++   Ls + + Dri  ++ Gk+ e+Gt+ eL+++
  MMETSP1174-20130828|11155_1  34 NLGYVPQTAFIMSGTVLDNILMGRH--LDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddrQHRRCGIIMSlNQLSLLPEFDRIYFIEGGKVAETGTYDELVSA 190
                  57899******************98..999******************************************************************************954444433568899987479***************************986 PP

  == domain 2    score: 176.4 bits;  conditional E-value: 2.8e-54
    TIGR02203  89 dlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvr...etltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakR...fdavsnrlrrlalkvasassls.splvqliasvalavvllialvqaqagaltvG......elvafitamlalikpl..ksLtnvs..aklqkglaaaesvfallDsppekdeGtralervrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkda..PiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlar..nGlYas 564
                   +  +++++l+ +p +++++++sg+++sr+  d  +v ++++  l  l++   ++  +i l++ +l       + +v+ +P  a+++ +v +  r+ ++ + ++ + + + v+e++qg + v   + +e  + R   +  + nr   ++  + + + ls s ++ li sva+ ++l    + +  +a  +G       ++ ++  ++ li+++     t ++  ++  + ++  e+ f  +    ++ +  + +  + G++ f++ +  y+   ++al+++s+ +e G++v +vGr GsGks+l+ ll R +e ++G+++++  d+a + L+ LR+  a++ q  v   +++  n+    +  ++++e  + l++    + v   p+ l  e+G  gs+Ls G  q l++aRall+ a   iL++De t+ +D   + ++qa + r   + t + iahRLsti ++D i+v+d G++ e G+  +Ll    +Gl+a 
  MMETSP1174-20130828|11155_1 371 MIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLDDLTHflwNASAII-LVVCILVP--PTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRnmgYIDAFNRSSFFSHTLINFNQLScSFISSLISSVAVIALLSNKNTYKDGQAAYAGlaltysFVIPYFLMLVGLITTMffTAFTGLQriSEYNTDFVPREKNFGSVTARFDEKKHAQDPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYR--YTDEEGTTFLRETL--SKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDrpEGLFAA 860
                  466799*************************9998887777655555544110333333.33333333..3334456668******************************************999998887777433433444445555566666666515567899999998888766554444433344111110223333333333332211334444311245677888888888888887777777788889**************************************************************************************************973333..44555555555443..4466679*******************************94457999**************************************************************8623588876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.2   1.1e-30   7.1e-29     352     505 ..       2     141 ..       1     146 [. 0.95
   2 !  155.3   2.8   9.1e-48   5.9e-46      39     529 .]     336     835 ..     321     835 .. 0.82

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 1.1e-30
    TIGR02857 352 alvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela 505
                  ++vGa G+GK+t+l ++lg v+   G+++v+g+             +++vpQ++++++gtv++ni ++r+  +   + ++l++ +l+e +k+l++gl te+Gerg  LSgGq qR+++Ar l+  + l+l+D P a++D +    + ++l++l+
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-------------LGYVPQTAFIMSGTVLDNILMGRHLDEPR-LTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLT 141
                  699*****************************9.............89*******************99876655.****************************************************************99999999998875 PP

  == domain 2    score: 155.3 bits;  conditional E-value: 9.1e-48
    TIGR02857  39 alaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrg...lptLklfgrak.aeaaaikris.eeyrerTm...evLriAfLSslvLellatlsvAlvAVyiGlrll.agkldlae.gLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevld.aeeqpeaekapltaaass........slelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenir.lar..kdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                  +++   + + a+++ +ll  ++++l+ + + ra+  +++q+ +rl+++ +++   + + ++sg++++     +  +d  +  yl  l+  +    +i+++v        + +++++P     +i + +   +a+r   +als +   + + v+g   ++tL l++ ++ +++  i++   +++ ++T+   + L  +f+Ssl+    +  svA++A     + +  g+ ++a  +L+   + P +   +  + + +  + +g + +++  + +  +e++  + +a  +++++          +++e+ s++y  g kpal++vs+++e g++v++vG  G+GKs+ll ll ++ve+  G++ +n +++a +d + +r+++a +pQ+P+ + g+v+ n+  ++r   +  ++ ++e l+++gld       + l  eiG +g++LS G+ q l+LArallr+a  ++l++DEPta++D +t++++++ +r+ ++  tv+ +aHrl+++ + d i+v+
  MMETSP1174-20130828|11155_1 336 NMQRNYVYISAAMAYILLLVCVSVLNTYGGIRAGRMIHDQVLSRLIAAPLSF---WER-TPSGRIISRFSGDLGMVDTQVIVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGrhiVDTLDLYEWVTsRNMGYIDAFNrSSFFSHTLinfNQLSCSFISSLI----S--SVAVIALLSNKNTYkDGQAAYAGlALTYSFVIPYFLMLVGLITTMFFTAFTGLQRISEYNTDFVpREKNFGSVTARFDEKKHAqdpwpiagDITFEDASLVYrTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDpFYRytDEEGTTFLRETLSKVGLDP------NVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVM 835
                  4444455567777777778999999999999999999999999998888886...555.9**********************************************************************************************4444555555544313444555543134555554222456666666655....3..78888888777766567777764477777888888888888888888888888887777665552333333333333333333566788889**********88999*********************************************************************************964441033334459*********75......567789***************************************************************************99876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   2.1   7.5e-28   4.9e-26     497     691 ..       2     190 ..       1     193 [. 0.93
   2 ?    1.8   0.5      0.18        12     278     390 ..     428     540 ..     406     548 .. 0.81
   3 !  156.1   0.0   3.8e-48   2.5e-46     452     690 ..     614     851 ..     601     856 .. 0.91

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 7.5e-28
    TIGR03375 497 aiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella...dk.....TlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                  +i+G +G+GK+t+l  +lg ++  +G++++dg             n+gyvpq + +++Gt+ dNi +g++ +++ +l ++++++ ++e +k+  +Gl + +gerG  LSgGQ q v++aR l+    ++l+D+P +a+D +  + ++++Lk+l+    d+      ++++  + slL   dri  ++ G++   G+ de+++a
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-------------NLGYVPQTAFIMSGTVLDNILMGRH-LDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVkndDRqhrrcGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSA 190
                  8******************************9.............89*********************87.9*******************************************************************************99753222233333699999*************************9999876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.18
    TIGR03375 278 fllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvv 390
                  ++lv+ ++ +p v++ ++a+p+   + +++ +  +++ + +  + +    l+ es++g   + +l   +++ ++   ++ a  ++s  +++l ++   + +++  l+s + v+
  MMETSP1174-20130828|11155_1 428 IILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSLISSVAVI 540
                  67888888889999999999999988888888877777777777777888888**********************************99999999988888888776544444 PP

  == domain 3    score: 156.1 bits;  conditional E-value: 3.8e-48
    TIGR03375 452 eekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdp..pillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                  e+k+  +   + G+i +++ s+ Y+   k+aL+ vs+ i+ G++v+++Gr+GsGKs+ll ll +++e+++G+v+++  d+  +d + lr++ +++pq ++ ++G++r N+    +++++e     ++ +   + v  +p+ l   ig +G++LS G  q+++laRall++   +il++DEPt+++D++++e++   +++  +d T++ ++Hr s +   d i+v+d+G +   G+ + +l+
  MMETSP1174-20130828|11155_1 614 EKKHAQDPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEG-TTFLRET--LSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLR 851
                  555666666799***************************************************************************************************9999776654.3333332..344566899*****************************975589******************************************************999998877765 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   2.6e-25   1.7e-23     371     567 ..       3     193 ..       1     199 [. 0.90
   2 !  154.7   0.5   1.2e-47   7.5e-46      86     565 ..     365     853 ..     302     863 .. 0.80

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 2.6e-25
    TIGR02204 371 lvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm.......kgrttlvia.hrLatvlkadrivvldkGriveqGthaeLiakggL 567
                  +vG  G Gk+t+l  +l   d   G++++dG             +l  vpq + ++++ vl+ni  Gr    + ++++  +a++ +e +++l+eG +t++GergvtLsGGq qr++iar++     ++L+d+  +a+d +  + + q+l++l        + r  ++++  +L+ + + dri  ++ G++ e+Gt++eL+ +g+ 
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-------------NLGYVPQTAFIMSGTVLDNILMGRH-LDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrqHRRCGIIMSlNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAGKG 193
                  8999************************999.............5899*******************95.67888999999********************************************************************999633333313356666654689***************************99865 PP

  == domain 2    score: 154.7 bits;  conditional E-value: 1.2e-47
    TIGR02204  86 GervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltsl.vllavPlvllPillfgrrvrklsresqdrladasayagealea...iktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsa.GeLa...qfvl.yavlvagslgal.sevlgelqraaGaaerliellkaksdikaP...aqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvlenir.yGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkda..piLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakg 565
                  G r    +  +v ++l+    +f++++ sg ++sr++ d  ++ + v   l   l   l    a++++v++ v  t + +++a+P+  + ++++ r  r++ r + d l+ + + ++e+++    + t   y+  ++ +  +  a +++   +++ i+   l  ++ i   +++v+++  +  ++  ++  +a   La    fv+ y ++  g ++++    +  lqr +     ++   k+   ++a    ++  + p ++ g+i+fe+ ++ y +   ++al+g++++++ G++v +vG +G+Gks ll ll r  + + G+++++  d++ +d + lr++ a++pq ++ +++sv+ n+  + r   +dee ++  +++ ++  +   p+    ++G  g +Ls G  q +++ara+l++a  +iL++de t+ +d  +++++q  + +  ++ t + iahrL+t+ ++d i+v+d+G++ e G+ a+L+++ 
  MMETSP1174-20130828|11155_1 365 GIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLD-DLTHFLWNASAIILVVCILVPPTVVpIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGrhiVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSF-ISSLISSVAVIALLSNKNTYKDGQAAyAGLAltySFVIpYFLMLVGLITTMfFTAFTGLQRISEYNTDFVPREKNFGSVTARfdeKKHAQDPWPIAGDITFEDASLVYRTGL-KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDpFYR--YTDEEGTTFLRETLSK--VGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDR 853
                  44555567789********************************998877776.566777777777776655544444328899*************************************8611245666677777888888888888988999999988766655.5566788888888888877765443313343223566656666666555541567888888887766666555555566655111333455889**************9998.99*******************************************************************************963333..4666655555555444..5555888999*************************986689****************************************************************9863 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   3.5e-25   2.3e-23     511     701 ..       9     194 ..       1     199 [. 0.83
   2 !  144.3   0.0   1.7e-44   1.1e-42     221     706 ..     365     862 ..     315     864 .. 0.77

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 3.5e-25
    TIGR01193 511 sGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdkt.........iifvahrlsvakksdkiivldeGkiieqGshkellke.nGf 701
                   Gk+t+   +++  +   G+++++               + y+Pq  fi+sG++l+n+l+g   ++++ ++++++  + +++d++ l+ G++te+ e + ++sgGq qr+++ar+l     ++++d+  + +d+ + + i + l +l+ k          ii+   +ls+  + d+i  ++ Gk+ e+G+++el+++ +Gf
  MMETSP1174-20130828|11155_1   9 CGKTTILMAMLGDVDCIAGTLQVD-------------GNLGYVPQTAFIMSGTVLDNILMGR--HLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKNddrqhrrcgIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAgKGF 194
                  555555555554444444444444.............4578*******************95..68899*************************************************************************99887654222333344499999*****************************9862454 PP

  == domain 2    score: 144.3 bits;  conditional E-value: 1.7e-44
    TIGR01193 221 ivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastil...slfl.dlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadyleksl.kyakaeavqqalkavlklilnvvilwv..G.allvirekltlGqlltfnallsyflnPleniinl....qpklqaarvann....rlnevylvdsefkekkkltelenlngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsds..kvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellke..nGfyasli 706
                   + + r+  d +l     l+  P+sf+     G i+srf+    ++d+   + l   + fl + s +++v  +lv       + +++aiP ya i+i+  +t ++ ++ + +a + + + + e+++G + + +l   e   ++       + ++s+ +++  +  q     +  li +v ++ +     ++   +    G  lt++ ++ yfl  +  i  +     + lq+ +  n+    r  +   v + f+ekk+ ++     gdi+++d s  y  g +++l  +s+ i++ +++ +vG +GsGks+l  ll +  +a+ G++++n  +++ +d ++lr + + +Pq P+ ++Gs+  nl    +    +ee +    + e  + +   p  +  e+  ++s++s G  q l+larall ++  k+l++de t+n+d+ t+++i   +  +++d t+i +ahrls    sd i+v+d+G++ e Gs  +ll+   +G +a +i
  MMETSP1174-20130828|11155_1 365 GIRAGRMIHDQVL---SRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLddlTHFLwNASAIILVVCILV---PPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFNRSSFfSHTLINFNQLSCSFISSLISSVAVIALlsNkNTYKDGQAAYAGLALTYSFVIPYFLMLVGLITTMfftaFTGLQRISEYNTdfvpREKNFGSVTARFDEKKHAQDPWPIAGDITFEDASLVYRTGlKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYT--DEEGT--TFLRETLSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRrEFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDrpEGLFAAMI 862
                  4444455555555...478999******************99999998665554211445423333444444444...344567889**************999999989999898999999************99888777766666666666651445556667666667777766655433003033333445567999***********9887776542222577888777665333366777889********999999**********999988773679******************************************************************************95444433..33322..3344555555555777889999*********************9985589*****************9877643799*************************************9762357777665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   1.4   2.3e-26   1.5e-24     483     679 ..       2     195 ..       1     200 [. 0.90
   2 !  138.3   0.6   1.1e-42     7e-41     211     682 ..     372     862 ..     337     864 .. 0.77

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 2.3e-26
    TIGR03797 483 aivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvt.......R..ivi.AHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfa 679
                  +ivGa G+GK t+l  +Lg     +G++  DG+             lG V Q + ++sg++l+ni+ g +l   +  +++  + leeD+k++  gl T + e g tlSGGQ QR+ iAr+l     ++l+D+   A+D +  + + +sl++l v        R  i++    LS + + dri+ +e G+v+e+G+y+eL++++  f 
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-------------LGYVPQTAFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKnddrqhrRcgIIMsLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAGKGFS 195
                  69*****************************95.............9*********************************************************************************************************9863332222344333146799**************************9765555 PP

  == domain 2    score: 138.3 bits;  conditional E-value: 1.1e-42
    TIGR03797 211 lqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerklle.legklsgltvqling...isKlrvagaeerafaawakefseqrklelkaqriedlltvlnav.lpvltsavlfalaisll.............aaaklslgsflafnt.afgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkP..rillfDEATSALDNrtQaiVseslek..lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla..keGlfaela 682
                  ++  v+ rL+  p sf+ +  +g + sr +g   +  +   + l  l   +  +  ++l++   +  ++v +++a+   a +l++  ++ r  +++ +   + + +l+ + ++g   ++ l +    +   + +   f +++ ++ +  ++++l  ++ +  ++ +++++l                      + ++ +  fl  +  + ++f +a t l ++    ++ vp  +    + +   E ++   dp  + G+i+ +  +  Y++  +  L+ vs+ ie G+ v++vG  GsGKS+ll lL+   + ++G v+   +d++++d+q++R  + v+ Q    l+gs+ +n+    ++t +e  + +r++     +   P  l   i  +g++lS G  Q l +Aral rk   +il++DE T  +D  t + + + + +     t i iAHRLSTi ++d ilv++ G++ e Gs  +Ll+   eGlfa+++
  MMETSP1174-20130828|11155_1 372 IHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNdALSPILTLVSESVQGrhiVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSlISSVAVIALLSNK---NtykdgqaayaglaLTYSFVIPYFLMLVGlITTMFFTAFTGLQRISEYNTDFVPREKNFGSVTARFDEKKH-AQDPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGTTFLRETLS--KVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRRefTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRdrPEGLFAAMI 862
                  5667888999999999999999999999999888888888889999999999999999999999999999998888776666555444444443333213345556665555553335555555555555556667777777776666666666555543303333333333333...24456666553333233333334444333144567777777777777778889988888888887777665.569*****************************************************************************************************************9877776532..35555888999999***********************6669*********99888888888877663357899**********************************85468***9886 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.4   2.5e-22   1.6e-20     510     702 ..       3     191 ..       1     199 [. 0.92
   2 !  147.8   0.0   1.2e-45   7.7e-44     208     709 ..     350     862 ..     337     863 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.5e-22
    TIGR03796 510 lvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..........RgctciivaHRLstiRdcdeiivlerGkvverGtHeellake 702
                  +vG+ G+Gk ti   + G  +  +G++ +Dg+             l +v q  ++++gtv dn+ l  + + e +l++ +    +++++ ++++g+++e+ e g  lsGGq qR+ iAR+L     ++++D+  +a+D ++ + i + l+r          R c +i+    Ls + + d+i  +e Gkv e+Gt++el++ +
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-------------LGYVPQTAFIMSGTVLDNI-LMGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRltvknddrqhRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAG 191
                  79999999999999999999999999999985.............899***************9.66899****************************************************************************99986666666666699************************************9865 PP

  == domain 2    score: 147.8 bits;  conditional E-value: 1.2e-45
    TIGR03796 208 vvltllqlallrr.leiklavassarflwhilrlPveffaqRaageiasRvqlndkvae....llsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGy....qakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegelt.iGmlvafqsllasflepveklvglvsel.qeleadlerldDvlen..pvdeelee....eeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknP..siLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeella..kegaYarLi 709
                   +l l+  ++l+    i+ + ++  ++l+++++ P +f+++  +g i sR + +  + +    +  ++l++ + ++ ++++ + +++   +v  +iai + a  ++a+  ++r+ +  ++   +    l + +++g ++++tl      + + sr +Gy       +  ++  ++ ++   s + +l++s++ +++l        +g+ +  G  +++  ++  fl     lvgl++++  +  ++l+r+++  +   p+++++ +     +ek++++++   + G +++++ +  y +  +p ++++s+ +++Gqrv +vG  GsGks +  l+  + e ++G+++++ ++ + +  + l++s a++ q  v ++g+vr nl  + +   ee  ++ +++     ++   p+ +++e+  +g+nls G+ q l +ARaL ++    iL++DE t+ +D +t+++i++ +rr    ct+i +aHRLsti d+d i+v++rG++ e G+  +ll+   eg +a++i
  MMETSP1174-20130828|11155_1 350 YILLLVCVSVLNTyGGIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDtqviVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLY---EWVTSRNMGYidafNRSSFFSHTLINFNQLSCSFISSLISSVAVIALLSNKN-TYKDGQAAyAGLALTYSFVIPYFLM----LVGLITTMfFTAFTGLQRISEYNTDfvPREKNFGSvtarFDEKKHAQDP-WPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEE-GTTFLRET--LSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREftDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRdrPEGLFAAMI 862
                  44444444444431356777888899************************986543332111144589999999999999999999999999899999999999999999999999999999999999***************754...4445555555100033444455555566666677777777777666665444.3456665514555556555555554....5555554413445667777765544113333333343322222233333.99****************************************************************************************************9998866555.45666765..5789999******************************9974479***********************96448********************************99998733467776665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.2   1.4e-22   9.2e-21     528     686 ..      30     195 ..       1     201 [. 0.82
   2 !  143.0   1.2   3.4e-44   2.2e-42     217     689 ..     375     862 ..     365     866 .. 0.79

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1.4e-22
    TIGR01846 528 wlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.......kgrt.viiiahrlstvraadrilvlekGkivesGkheellakeglya 686
                   +  ++g v q ++++s+++ dni +++ +++e ++ ++ + +  ++ +++l++G  tevge+G++lsGGq qr+++ar+l +   ++++d+  +a+d +  + i + l++++       + r  +i+   +ls + + dri  +e Gk++e G+++el++ +  ++
  MMETSP1174-20130828|11155_1  30 QVDGNLGYVPQTAFIMSGTVLDNILMGR-HLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrqHRRCgIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAGKGFS 195
                  44558999****************9997.6788888888888888999************************************************************999874443332223325666689****************************9977766 PP

  == domain 2    score: 143.0 bits;  conditional E-value: 3.4e-44
    TIGR01846 217 klyrhllalPlsyfesrrvGdtvarvr.eleqi..refltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkl....taalll.....wfGaklvlkG.elsvGqlva.fnmlagrvsqPvlrl...aqlWqdfqqvkial.erlGdildsPteassagkaalpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanP..rilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak..eglyakly 689
                  ++   l+a Pls++e+   G +++r   +l  +  +  +    lt  l    + + l v +   p+++  +++++++y+ + ++v  + r+      +  +   +++ esv g + + +  + + ++ r    + a+ ++sf +++l n+ + + ++i+ l    ++++ll     +   ++  +G +l+   ++  f ml g +++  +      q   ++    +   +  G +  +  e+++a +     ++G+i+fe+  + y+    + l+ +s+ i++G+ +G+vG++GsGks l  ll r+     Grv+++  d+a +d + lr   +v+ q  v + +s+r n+       +ee     + l  +   +   ++   +e+g  G++ls G  q ++laral+ +   +il++de t+ +d+ +++ i+  +r+   + tvi+iahrlst+ ++d ilv+++G++ e G+ ++ll++  egl+a + 
  MMETSP1174-20130828|11155_1 375 QVLSRLIAAPLSFWERTPSGRIISRFSgDLGMVdtQVIVYLDDLTHFLWNASA-IILVVCILVPPTVVP-IVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSLissvAVIALLsnkntYKDGQAAYAGlALTYSFVIPyFLMLVGLITTMFFTAftgLQRISEYNTDFVPReKNFGSVTARFDEKKHA-Q-DPWPIAGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGT---TFLRETLSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDrpEGLFAAMI 862
                  5667899******************8634444310344445566666655444.444455555666655.5679*******99999887765444445666778999***********************************99999888777666555441110444444222222222333333245555555337899999998766541113445566666665514589999888888883.3.334599*************************************************************************************************9766666666654...556677788889999****************************885459******************************************************************987789999885 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   5.7e-22   3.7e-20     558     704 ..      36     191 ..       3     198 .. 0.86
   2 !   15.1   0.1   1.7e-05    0.0011     226     347 ..     362     483 ..     235     493 .. 0.75
   3 !  126.0   0.0   4.8e-39   3.2e-37     469     703 ..     618     852 ..     612     862 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 5.7e-22
    TIGR00958 558 alVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa........eveq.llqe.sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeke 704
                  + V q   ++sg+v +Ni  G ++ ++ ++t +  a++ ++ ++ l++g  tevge+G  lsgGq qr+ iAR L     ++++D+  +A+D+          ++ ++++ +++++   +++  ++Ls+  + d+i +++ g+v e+Gt+++L++  
  MMETSP1174-20130828|11155_1  36 GYVPQTAFIMSGTVLDNILMG-RHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVkvgrgifqSLKRlTVKNdDRQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAG 191
                  6789999**************.5678899****************************************************************7777666433331233334444555688889*****************************8765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.7e-05
    TIGR00958 226 eyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEal 347
                  +y   r  + i+ ++++ l+   + F+++++ G ++SR s D  +v   +  ++++l++ l  + + +++ + l p   +  ++a+P+   +  ++  + ++ ++ + +a++    ++ E +
  MMETSP1174-20130828|11155_1 362 TYGGIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESV 483
                  4555566788**********************************999999988888877777776666666666666666666777777777777777777777777777666666666665 PP

  == domain 3    score: 126.0 bits;  conditional E-value: 4.8e-39
    TIGR00958 469 tlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkP..rvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmek 703
                   + p  + G ++F+d s  Y +   kp l++ +f +e G+ v +VG  GsGKS+   ll +  +  +G+v++  +++  +d + l++  a++ q Pv  +gsvr N+    ++t++e  t+  +++   + +   ++    e+g  Gs ls G  q + +ARAL+rk    +L++De t+ +D ++++ +q+   +++++ tv+ iahrLst+  +d ilv+ +g++ e G  ++L  +
  MMETSP1174-20130828|11155_1 618 AQDPWPIAGDITFEDASLVYRT-GLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEG-TTFLRETL--SKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAviRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRD 852
                  5778899*************65.679********************************************************************************987666665554.44445544..4488899999****************************83346899****************988899**********************************99888655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   1.1   1.4e-29   9.2e-28     366     515 ..       3     138 ..       1     147 [. 0.95
   2 !  115.8   0.0   6.7e-36   4.4e-34      92     530 .]     376     823 ..     366     823 .. 0.73

  Alignments for each domain:
  == domain 1    score: 95.0 bits;  conditional E-value: 1.4e-29
    TIGR02868 366 vvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl 515
                  +vGa G+GK+t+l++++g +d  +G++ +dg                +++q a + + tv++N++++r   ++  l+++L +  L++ l++L++Gl+t++ge+g +lSGG+ qR+ +AR L   + ++l+D P + +D+++++ + + L 
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-------------NLGYVPQTAFIMSGTVLDNILMGRH-LDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLK 138
                  9******************************.............689********************96.78999*******************************************************************99988875 PP

  == domain 2    score: 115.8 bits;  conditional E-value: 6.7e-36
    TIGR02868  92 vYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllega...aelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak.........vevaeasapaaeaaas.....ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdee....llaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLlada..pvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                  v +rL  a l++ +r  +G +++r++ D   ++   v v++  ++ ++  ++a+ l+ +++v+  +v +++++ + + + ++  r +r+a++  + + s +   + + ++g+   ++l  +         + +a +++   ++   ++++l+ +  + ++ ++++ all   + + dg+ a + lA+     ++ f +l  l      + ++ + ++Ri+e   +          v     +a  +e+  +      + +++++d s  y ++ + +l+gvs+ +e G+rv vvG++G+GKs Ll ll++++++++G+v+++  +va ++ + +r   +v++q +     +vr Nl       tdee    l + L++vgL   +      l  ++g+ g+ lS Ge q l lARaLl +a  ++l++DEPt+++D +t e++ + ++   ++ tv+ ++hrl
  MMETSP1174-20130828|11155_1 376 VLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQ-VIVYLDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTNREAKRVTNDALSPILTLVSESVQGRhivDTLDLYEWVTSRNMGYIDAFNRSSFFSHTLINFNQLSCSFISSLISSVAVIALLSNKNTYKDGQAAYAGLALTYSFVIPYFLMLVGL--ITTMFFTAFTGLQRISEYNTDFvpreknfgsV-----TARFDEKKHAqdpwpIAGDITFEDASLVYRTGLKpALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFY-RYTDEEgttfLRETLSKVGLDPNV------LTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRL 823
                  55677777777888888888888888888777544.4466666777777777777777777666666665555555555555555555555555555555555555555543111566666666666666667777777777777788888888777666666677777778899999998888888777777766555544..34456677778888887766653433333331.....222222222222333567999*******9999888********************************************************************************7543.456666122245566666666554......5589***********************8764489************************************86 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.4   5.3e-27   3.4e-25     348     541 ..       2     188 ..       1     190 [. 0.92
   2 !  105.3   0.0   9.8e-33   6.4e-31     314     541 ..     625     850 ..     597     852 .. 0.90

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 5.3e-27
    TIGR01842 348 aiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.......karkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                  +i+G+ g Gk+++   ++G + + +G++++Dg             ++GY+Pq   +++Gtv +ni  +++++d+ ++ +  +++   e + +l++G  te+ge+G +LsgGq qR+++aR lyg+  lv++D+P a +D +    + + lk+l       ++r++ +++  ++ sll   d+i  ++ G++++ G+ +e++
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-------------NLGYVPQTAFIMSGTVLDNIL-MGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddrQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELV 188
                  79*****************************9.............58******************7.66679999999999999999******************************************************9999*99999874433333467788888899************************99986 PP

  == domain 2    score: 105.3 bits;  conditional E-value: 9.8e-33
    TIGR01842 314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdP..klvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                   g ++ e+ slv  ++ k+ l+g+sfa++ G+ ++++G  gsGkssL  ll  +++ ++G+v +++ d+  +d ++l  s   +Pq    ++G+v  n+  f + +d+e       l +    +   p+    eig +G++Ls G  q ++LaRal ++   k++v+DeP an+D + +  + +a+++     +tv++i+hr s +   d ilv++ G+l ++G+  ++l
  MMETSP1174-20130828|11155_1 625 AGDITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGT---TFLRETLSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERI-QAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLL 850
                  57899999999999*************************************************************************9999********999996666543...3455555555666999999************************99644799************99986.68888899*********************************988776 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.1   3.6e-18   2.3e-16     366     577 ..       3     207 ..       1     216 [. 0.78
   2 !  116.4   0.7   4.5e-36   2.9e-34      91     580 ..     372     875 ..     300     880 .. 0.70

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3.6e-18
    TIGR01192 366 ivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal......rknrttfiia..hrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasgllieee 577
                  ivg  g gktt++  +    d  +g + +dg              +  v q a ++  ++ +ni +gr+   +  + +   a+  ++ +++  +g  t vgerg  lsgg+ qr++iar++     ++++d+  +a+dv+    + +++  l      r++r   ii    +ls + e d + f++ g++ e g++del+  + +  +++ +sgl  ++ 
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-------------NLGYVPQTAFIMSGTVLDNILMGRHL-DEPRLTQVLTASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddRQHRRCGIIMslNQLSLLPEFDRIYFIEGGKVAETGTYDELVSAG-KGFSIFVQSGLSSKDT 207
                  7777777777766555555577777777777.............4678899999*************975.34456666666667778899999**********************************************98877777665533322344555555532469***************************9765.5556677788876654 PP

  == domain 2    score: 116.4 bits;  conditional E-value: 4.5e-36
    TIGR01192  91 llteafgriismplswhsqrgtsnalhtl...lrasetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrt.kegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekl...lsaqypvldwwalasg.lnriastislviilvigtvlvkkgels.vgeviaf...igfanlligrldqlkafvtqiveara.kledffdled...s.vkereepadarelknvkgavefrdisfefans.sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailkna..pilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqk..dgrfakllrasgllieeeark 580
                  + ++ ++r+i+ pls+ ++  + + +  +   l   +t + ++l+ + + l  + a++l++ + +      ++v +v++i ++    + ++rt +e +   ++    +++ vs+s+    +v++ +  e  t+    + + +       + ++++  l+ + +  + s+++++++l       k g+ +  g  +++   i +  +l+g +  +   +   ++  +    df   e    s +   +e  +a++   + g++ f+d s  +    +  +r vsf +  gq v +vg tg+gk++l+ ll r+ + ++g+++i+  d+a v+ + lr s a + q    l  s+r n+       tdee     + + ++  ++   +     +g  g++ls ge q l++ara+l+ a   ilv+de t+ +d+ t+ r+++ i     + t + iahrlst+ ++d++l +d+g l e gs  +l +   +g fa+++ a g  +  e r+
  MMETSP1174-20130828|11155_1 372 IHDQVLSRLIAAPLSFWERTPSGRIISRFsgdLGMVDTQVIVYLDDLTHFLWNASAIILVVCILV----PPTVVPIVIAIPFYATILIAVDRTnREAKRVTNDALSPILTLVSESVQGRHIVDTLDLYEWVTSRNMGYIDAFnrsSFFSHTLINFNQLSCSfISSLISSVAVIALLS-NKNTYKDGQAAyAGLALTYsfvIPYFLMLVGLITTMFFTAFTGLQRISeYNTDFVPREKnfgSvTARFDEKKHAQDPWPIAGDITFEDASLVYRTGlKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYR-YTDEEGTTFLRETLSKVGLD--PNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDrpEGLFAAMIDAHGPQTAAELRQ 875
                  45667788888888876665554444332222777788888888888888877777777766544....345566666665444444444454155566666677778888888888777776655555555554444443310033345566777765441444555555444433.3344566665413444443222455566667666653222222222220234565555322231344588889999999***********999775267899*****************************************************************************96654.45666555544444443333..4566778************************9944689***********************************************************999976434899****99999888777665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.47        31      32      50 ..       2      20 ..       1      34 [. 0.75
   2 !   55.4   0.0   1.8e-17   1.2e-15      82     225 ..      36     179 ..      27     190 .. 0.81
   3 ?   -1.1   0.0       3.4   2.2e+02     164     200 ..     250     286 ..     236     297 .. 0.75
   4 !   59.0   0.0   1.5e-18     1e-16       4     208 ..     630     825 ..     628     855 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.47
    TIGR02315 32 aviGlsGaGkstllrsinr 50
                 +++G  G Gk+t+l ++ +
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLG 20
                 69***********987655 PP

  == domain 2    score: 55.4 bits;  conditional E-value: 1.8e-17
    TIGR02315  82 gmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrin......kekgitvivnlHqvdlakkyadrivglkageiv 225
                  g++ q  + i   tvl+n+L+gr   ++ l ++l+  + e   + l++L++ gl+    +r  +LsGGq qRv+iaR+l     l+l D+P+a++D k  + +++ lkr++      +++   +i++l q++l  ++ dri  ++ g++ 
  MMETSP1174-20130828|11155_1  36 GYVPQT-AFIMSGTVLDNILMGRHLDEPRLTQVLTASHLE---EDLKSLNE-GLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrQHRRCGIIMSLNQLSLLPEF-DRIYFIEGGKVA 179
                  666654.678889**********99999988776655555...55666665.9********************************************************9732222234457899999999999988.788877777775 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 3.4
    TIGR02315 164 pklilaDEPiasLDpksskqvmdllkrinkekgitvi 200
                  ++ +  DEPi  ++p +s q++++ ++i+  +  +v+
  MMETSP1174-20130828|11155_1 250 TSAVEDDEPILVVEPDASAQLVKKDHEISGGHSTAVL 286
                  4555679*************99998888877776666 PP

  == domain 4    score: 59.0 bits;  conditional E-value: 1.5e-18
    TIGR02315   4 venlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervgla.....elaakradqLsGGqqqRvaiaRalaqqp..klilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl 208
                  +e+ s vy +g k al+ v+++i++G+ v+v+G+ G+Gks ll  + r+ve s g+++++ ++v+   + +l++lr++ ++i q              L+g +  + +l  +++   ee ++   e+L++vgl+     e      ++Ls G+ q +++aRal++++  k+++ DEP+a +D ++ +++  +++r    ++ tvi   H+++ 
  MMETSP1174-20130828|11155_1 630 FEDASLVYRTGlKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVA---GVDLQRLRSSCAVIPQSPVT----------LTGSV--RRNLDPFYRYTDEEGTTFLRETLSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF--TDCTVITIAHRLST 825
                  666677787763669************************************************99...889**********9997433..........44433..233443333333344444556778887761111144455679*****************99644899*****************99998743..45566655666654 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.068       4.4      31      48 ..       2      19 ..       1      37 [. 0.74
   2 !   41.1   0.0   4.3e-13   2.8e-11      80     231 ..      31     188 ..      23     194 .. 0.75
   3 !   74.0   0.0   3.8e-23   2.5e-21       6     232 ..     632     851 ..     627     858 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.068
    TIGR00972 31 aliGpsGcGkstllrsln 48
                 +++G  GcGk+t+l ++ 
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAML 19
                 589**********99875 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 4.3e-13
    TIGR00972  80 lrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkelde.iveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk........ytivivthnmqqaarvsdktaffleGelveegeteqif 231
                  +  ++G v q+    + +++dn+ +g +l + +  ++l +   ee Lk  +l + + +++ + +++LsGGq qr++iar+l     ++L+D+P +a+D +  + i + ++ L  k          i++   +++      d++ f+  G++ e+g+ ++++
  MMETSP1174-20130828|11155_1  31 VDGNLGYVPQTAFIMSGTVLDNILMGRHLDEPRLTQVLTAsHLEEDLK--SLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKnddrqhrrCGIIMSLNQLSLLP-EFDRIYFIEGGKVAETGTYDELV 188
                  556789999999999999************988888776415677776..69999*********************************************9999998888774221111111133333333333333.34777777777777777776666 PP

  == domain 3    score: 74.0 bits;  conditional E-value: 3.8e-23
    TIGR00972   6 nlklfy..gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdev.kdklkksalsLsGGqqqrlciaralaveP..evlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqife 232
                  + +l+y  g k al+ v++ i++ + ++++G +G+Gks+ll  l r+ ++      +G+v+++ +d+    +d ++lr++  ++ q p   + s+  n+   +r ++     e     +e+L+k++l  +v  +++  s+ +Ls G  q l++aral  +   ++l++DePt+ +D  + e+i+++i+   ++ t++ + h ++     sd + ++ +Gel e+g+++++++
  MMETSP1174-20130828|11155_1 632 DASLVYrtGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEAS-----AGRVMINARDVAG--VDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDE----EGTTFLRETLSKVGLDPNVlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIV-DSDVILVMDRGELGEYGSPADLLR 851
                  555555224578************************************998.....9**********87..599**************************99999974....4455667889999997665278999********************88754489**************************************8655.59***************9998875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.5   2.5e-14   1.7e-12      31     219 ..       3     187 ..       1     192 [. 0.87
   2 !   64.4   0.0   3.3e-20   2.1e-18      13     218 ..     642     848 ..     629     856 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.5e-14
    TIGR03410  31 vlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikel......akekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                  ++G  g Gktt+l a++g +++ +G+++++g+              ++yvpq   i++  tv +n+ +g +  + +      +++++e++ +l   l++    rg  LsGGq q ++iaR+L     l+l+D+P   +   + + i + +k+l      ++++  +i+++ ++l++  e  dr++ +e G+v ++g+ +el
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN--------------LGYVPQTAFIMSG-TVLDNILMGRHLDEPRltqvltASHLEEDLKSLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddRQHRRCGIIMSLNQLSLLPE-FDRIYFIEGGKVAETGTYDEL 187
                  78999*********************999986..............8*****9988875.9********9887766555666778889999999999999999*********************************************999993332223456799**********999.699999********9998876 PP

  == domain 2    score: 64.4 bits;  conditional E-value: 3.3e-20
    TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelF...P.vlkemlkRrgGdLsGGqqqqlaiaRaLvteP..klllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                    +lr+vs+ +e+g+ v v+Gr g Gk++ll  l  ++++++G+++++ +d+  ++  +r ++  a +pq    ++  +v+ nl   ++ ++++ ++   e ++     P vl+e     g +Ls G  q l++aRaL+ +   k+l++DePt  +  +  + i++vi++  + +d +++ + + l+  ++ +d +lv++rGe+ + g+ ++
  MMETSP1174-20130828|11155_1 642 KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVD-LQRLRSSCAVIPQSPVTLT-GSVRRNLDPFYRYTDEEGTTFLRETLSKVgldPnVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPAD 848
                  5689************************************************9986.689**********987776.59*********99999976666555543312255999999**********************9865599**********************96..6779***********9999.9**********988777665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.5   3.5e-09   2.3e-07     105     222 ..      65     190 ..       2     198 .. 0.80
   2 !   79.7   0.0   7.3e-25   4.7e-23       6     224 ..     634     854 ..     629     863 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 3.5e-09
    TIGR03864 105 sraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv......reeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222
                  ++  +++++ee l+ l  gl+    e+  +L+GG+++rv iar+l     l+L+D++ + +D++  + + +++++l+      ++++ +++ +   +  + + dr+  ++ Gkv+ +G+ +el+++
  MMETSP1174-20130828|11155_1  65 TQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSA 190
                  55556667777777653379999999999******************************************99998733333345678899999999999999***************99999876 PP

  == domain 2    score: 79.7 bits;  conditional E-value: 7.3e-25
    TIGR03864   6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlgl.....aeraeekvreLnGGhrrrveiarallheP..klLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                  +l ++ g + al++vs+++++g+ v ++G  G+Gks L+ ll r++ea++g++ ++  d+     + l++   v  qs + l  sv++nl  +      + +e ++ ++e+l+++gl     +e       +L+ G+ + + +arall +   k+L++De+t+ +D+++ +++++ +r+    ++ +v+   h +  + ++d ++v+++G++   G++a+l ++++
  MMETSP1174-20130828|11155_1 634 SLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYR---YTDEEGTTFLRETLSKVGLdpnvlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF--TDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLLRDRP 854
                  6788999***********************************************************************************85544...3455555666666666665111116666677799****************9964489************************99..67889999*****************************998765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   2.2e-08   1.4e-06     126     184 ..      82     140 ..       2     144 .. 0.82
   2 !   77.4   0.1   4.2e-24   2.8e-22       2     215 ..     628     839 ..     627     840 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.2e-08
    TIGR00960 126 vGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev 184
                   Gl+    +  v+lsgG+ qrv+iar++     l+l d+P + +d ++ r+i++ l+++
  MMETSP1174-20130828|11155_1  82 EGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRL 140
                  388888899999******************************************99987 PP

  == domain 2    score: 77.4 bits;  conditional E-value: 4.2e-24
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkP..allladePtgnlddelsrdilelleevnraGttvlvathde.nlveskrkrvltlskGk 215
                  i+fe+ s  y+++ ++al +v++ ie+G+ v +vG +G+Gks+ll l+  i ++saG+++++  d++     ++  lr    ++ q    l+  +v  n+    r   ++ +e  +  +++l kvGl     +        +ls Ge q +++ara+++k   ++l+ dePt+n+d ++ + i  ++++   +  tv+  +h   ++v+s    +l++++G+
  MMETSP1174-20130828|11155_1 628 ITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAG---VDLQRLRSSCAVIPQSPVTLTG-SVRRNLDPFYR---YTDEEGTTFLRETLSKVGLDPNVLTeeiggSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF-TDCTVITIAHRLsTIVDS--DVILVMDRGE 839
                  89***************************************************************975...567789*********9887765.67777765555...5556667778899999998766544111115689*****************9744689*******************998755.556677666665055554..4566666665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.062       4.1      33      64 ..       3      34 ..       2      41 .. 0.93
   2 !   26.4   0.0   1.6e-08   1.1e-06      93     184 ..      46     141 ..      35     146 .. 0.80
   3 !   71.9   0.0   1.9e-22   1.2e-20       2     199 ..     628     825 ..     628     839 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.062
    TIGR02673 33 ltGasGaGkttllklllgaekpsrGevevage 64
                 ++Ga G Gktt+l  +lg     +G+++v+g+
  MMETSP1174-20130828|11155_1  3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN 34
                 689*************************9996 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.6e-08
    TIGR02673  93 drtvlenvalalevrgkk..eeeiqkrveevlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkeln 184
                  + tvl+n+ +  +++  +  +  + ++ ee l+ +  gl+  + +   +lsgG  qRv+iaR++     l+l D+P   +D ++ + i++ lk+l+
  MMETSP1174-20130828|11155_1  46 SGTVLDNILMGRHLDEPRltQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLT 141
                  557777777766665443003345566777777765579999999999*****************************************9999875 PP

  == domain 3    score: 71.9 bits;  conditional E-value: 1.9e-22
    TIGR02673   2 ielekvskeyaagve.aLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgle.....dkakalpeelsgGeqqRvaiaRaivnkP..elllaDePtGnlDdelserildllkelnkrGttvivathdeel 199
                  i++e+ s+ y +g + aL+ vs+ ie+g+ + ++G+ G+Gk++ll ll+ + ++s+G+v ++ +dva +   +l  lR + +v+ q    l + +v  n+    + + ++ ++     +e+l++vgl+     + +    ++ls Ge q  ++aRa+++k   ++l+ DePt n+D ++ eri +++++  +   tvi  +h  + 
  MMETSP1174-20130828|11155_1 628 ITFEDASLVYRTGLKpALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGV---DLQRLRSSCAVIPQSPVTL-TGSVRRNLDPFYRYTDEEGTT---FLRETLSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTD-CTVITIAHRLST 825
                  67888899999876449***********************************************99866...68889*********86555.568899987666655544444...45667777777611111455567899****************9964489**********************987765.566666676554 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.4   1.7e-15   1.1e-13      77     219 ..      28     178 ..       2     179 .. 0.80
   2 !   50.7   0.1   5.5e-16   3.5e-14      20     219 ..     644     840 ..     635     841 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.7e-15
    TIGR02982  77 lvqvrrkiGyifqahnllesltaeqnvrmalelkek.lsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar......eqgttillvthdnrildvadrivkmedGkl 219
                    qv  ++Gy+ q+  +  s t+ +n+ m+ +l e  l++  ++++ ee l+++  gl  ++  +   lsgGq qrv+iar+l     lvl d+P aa+d k gr + + l++l+       ++ + i++      +l   dri  +e Gk+
  MMETSP1174-20130828|11155_1  28 TLQVDGNLGYVPQTAFI-MSGTVLDNILMGRHLDEPrLTQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVknddrqHRRCGIIMSLNQLSLLPEFDRIYFIEGGKV 178
                  56788899***998765.5679***********875267777777788888877558999***************************************************99986566665678889888888888888888888888876 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 5.5e-16
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarP..klvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                   l  +++ ie+g+ v + G +GsGk  ll l+  + ++  G + + ++++ g++   l+++r +  +i q+      +t +  vr  l+   +++ +e ++  +e l++vgl+      ++    ++ls G  q +++aral  +   k+++ dePta +d  + + +  ++++      +t++ ++h    +  +d i+ m++G+l
  MMETSP1174-20130828|11155_1 644 ALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVD---LQRLRSSCAVIPQS-----PVTLTGSVRRNLDPFYRYTDEEGTTFLRETLSKVGLDPnvlteEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFT--DCTVITIAHRLSTIVDSDVILVMDRGEL 840
                  588999******************************************999985...7889*******997.....467777899999999999999999999********98755555888999******************9864599**********************99765..6999999998666656899*******87 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.2   3.2e-11   2.1e-09      29     184 ..       3     144 ..       1     148 [. 0.79
   2 !   58.3   0.0   2.3e-18   1.5e-16      11     200 ..     642     829 ..     634     835 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3.2e-11
    TIGR03608  29 ivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlela..lklkkkskkekekkkkevlekvg..lekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeeg 184
                  ivG  G+GK+t+L  +++l ++d     + g+             +  +lgy+ q  a + + tv +n+ ++  l   ++++  + ++++e l++++  l+++  ++  +lsgG+ qRv++ar l     l+l D+P +++D k    +++ lk l+ ++
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTIL--MAMLGDVD----CIAGTL-----------QVDGNLGYVPQT-AFIMSGTVLDNILMGrhLDEPRLTQVLTASHLEEDLKSLNegLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKN 144
                  7888999999886..44444444....333433...........122457999996.6777899****999833455566777788889999998853389999999**********************************************9987665 PP

  == domain 2    score: 58.3 bits;  conditional E-value: 2.3e-18
    TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkki....yelsgGekqRvalarillkes..elilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                  k  l+ +s+ ie+G+ v +vG+ GsGKs lL +l ++ + + g+v+++ ++ a        + lr++ + + q    l + +v++nl+    + + + +e ++ + e+l kvgl  + l ++i     +ls Ge q ++lar+ll+++  ++++ DEPt+++D+ + e + ++++     + t+i + H  +    +
  MMETSP1174-20130828|11155_1 642 KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVA---G-VDLQRLRSSCAVIPQSPVTL-TGSVRRNLDP---FYRYTDEEGTTFLRETLSKVGLdPNVLTEEIggsgSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFT-DCTVITIAHRLSTIVDS 829
                  567999********************************************944...3.44556789999999987666.679******7...55666788999999*******9766677776555589*****************954489**************9999888877655.56677777876655555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.7   1.1e-09   7.1e-08      74     219 ..      36     189 ..       1     232 [. 0.74
   2 !   62.6   0.0   1.1e-19   7.3e-18       2     221 ..     638     853 ..     637     865 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.1e-09
    TIGR01186  74 amviqkialfPhmtildnislglellkideqe..rkekalealklv..dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvkl.....qkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                  ++v q  a++   t+ldni +g +l +    +     +  e lk +  +l   + +    lsGG+ qrv +ar+l     l+lmd++++a+d  +   + + l++l     ++++++  + ++ +    l   dri  ++ G++   Gt de++ 
  MMETSP1174-20130828|11155_1  36 GYVPQT-AFIMSGTVLDNILMGRHLDEPRLTQvlTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvkndDRQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVS 189
                  566554.45556788888888877765333221133344455554422566666677789********************************99988888888877332223567778888888888889999*******************875 PP

  == domain 2    score: 62.6 bits;  conditional E-value: 1.1e-19
    TIGR01186   2 ktGlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl.eeyedr....yPdelsGGmqqrvGlaralaaeP..dlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnP 221
                  +tGlk +++ v+++ie+G+ + ++G +GsGks+l+ ll r++e +aG+++i+  d+a ++ ++l    r   a++ q+  +    ++  n++    + ++ ++e     +e+l +v+l ++   +       +ls G  q + laral  +   ++l+mde+ + +d  + + +q  +   ++  + t++ i+h l   +  +d i ++  Ge+   G+P ++lr+ 
  MMETSP1174-20130828|11155_1 638 RTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRL----RSSCAVIPQS-PVTLTGSVRRNLDP---FYRYTDEEGTTFLRETLSKVGLdPNVLTEeiggSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIR--REFTDCTVITIAHRLSTIV-DSDVILVMDRGELGEYGSPADLLRDR 853
                  59*********************************************************99999....5666555554.55555678888764...567788999999**********877655422224689***************87753389*******************8776..466789*********8655.69*********************974 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1      0.02       1.3      31      63 ..       2      34 ..       1      41 [. 0.94
   2 !   31.6   0.0   3.2e-10   2.1e-08     131     224 ..      89     187 ..      45     193 .. 0.85
   3 !   60.9   1.6   3.7e-19   2.4e-17       7     225 ..     635     850 ..     629     860 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.02
    TIGR03873 31 gllGPnGsGkstllrllaGllapdaGevdlaga 63
                 g++G  G+Gk+t+l  + G +   aG+++++g+
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN 34
                 89**************************99985 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3.2e-10
    TIGR03873 131 adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.......aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224
                   +r   tlsGG+ qrv +ar+l     l+l+d+P   +dv+   ++++ ++ l+       + +  ++++l  l+l  ++ d++  ++gG+v+ +G+  e+
  MMETSP1174-20130828|11155_1  89 GERG-VTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrqHRRCGIIMSLNQLSLLPEF-DRIYFIEGGKVAETGTYDEL 187
                  4554.49****************************************9999999999998888999**********8776.9**************98765 PP

  == domain 3    score: 60.9 bits;  conditional E-value: 3.7e-19
    TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvels.....sladrdlstlsGGerqrvhlaralaqeP..klllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                  + +r+g ++ + +v     +G+  g++G  GsGks ll ll  +++++aG+v +++ d+ ++  ++     a++ q+     p++    v     P+         e +   +++l++v+l+     +    + s ls Ge q   laral ++   k+l++dePt  +d+++   + a++r    +  tv+   h l+     +d ++v+d G +   G+pa++l
  MMETSP1174-20130828|11155_1 635 LVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQS-----PVTLTGSVRRNLDPFYRYTDE---EGTTFLRETLSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRRE-FTDCTVITIAHRLSTI-VDSDVILVMDRGELGEYGSPADLL 850
                  55788889999***************************************************988878899***996.....677777777777788654333...457777888888876521000334457799***************99864499***************9999999988.7899999999***976.568*****************9988 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.4   6.8e-11   4.4e-09      84     191 ..      34     144 ..       1     180 [. 0.72
   2 !   29.9   0.0   1.3e-09   8.2e-08      20      71 ..     644     695 ..     631     704 .. 0.90
   3 !   27.6   0.0   6.3e-09   4.1e-07     126     219 ..     742     840 ..     728     842 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 6.8e-11
    TIGR02211  84 klGfiyqfhhlladftalenvamPlliskkskkeakera..kellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkek 191
                  +lG++ q   +++  t+l+n+ m   + +   ++  +++  +e l+ +  gl+  + ++   lsGG+ qrv+iar+l     lvl d+P + +d k  + if+ l++l  ++
  MMETSP1174-20130828|11155_1  34 NLGYVPQTAFIMS-GTVLDNILMGRHLDEPRLTQVLTAShlEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKN 144
                  6999999988776.59*******999887766654333211455555423799***************************************************99986543 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.3e-09
    TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsk 71 
                   l+gvs+ ie+g+ v++vG +GsGks ll ll  + ++++G+v+++ +++  
  MMETSP1174-20130828|11155_1 644 ALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAG 695
                  589******************************************9988765 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 6.3e-09
    TIGR02211 126 lekvgle.....krinkkpselsGGerqrvaiaralvnkP..klvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                  l+kvgl+     + i    s+ls Ge q  ++aral+ k   k+++ dePt+n+d +t ++i  ++++  + ++ +++ ++h l+ +   d+ l +  g+l
  MMETSP1174-20130828|11155_1 742 LSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLSTIVDSDVILVMDRGEL 840
                  55665541111156667789*****************996448999*****************99986..4456778999999999999999999999987 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   1.2   2.5e-14   1.6e-12      35     225 ..       3     190 ..       1     262 [. 0.85
   2 !   49.4   0.0   1.3e-15   8.3e-14      18     232 ..     643     860 ..     633     866 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.5e-14
    TIGR03265  35 lLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayG..LknkklkreevaerveelLelv..glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkkl.....qrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225
                  ++G  GCGktt+L ++ G  +  aG++ ++g+            G v q+ a+  + tv +ni +G  L + +l++  +a+++ee L+ +  gls+        lsGGq qrv++ar+l    gl+L+D+Pl+a+D kv   + + lk+l      r+     i++  +q   l   Dri  ++ gk+  +gt  e+ + 
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-----------LGYVPQT-AFIMSGTVLDNILMGrhLDEPRLTQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvkndDRQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSA 190
                  68999************9999999*9999984...........6888886.666688******99966677788888889999999987655899999999**************************************99999999888333334667788899999*************************9998765 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 1.3e-15
    TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPn..ltvaeniayGLkn.kklkreevaerveelLelvgls.....gseekyPgqlsGGqqqrvaLaralalsP..glLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe.qPatkfva 232
                   al+ +s+++++g  v ++G  G Gk++LL ++  + +++aG+++++ rd++ +  q+     +  s a+ P+  +t++  +   L    +++ ee ++ ++e L+ vgl+     +      + ls G  q ++Laral  +   ++L++DeP + +D    e+++  +++     + t i ++h     ++ +D i vm++g++  +g+P+++ + +P+  f a
  MMETSP1174-20130828|11155_1 643 PALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQR-----LRSSCAVIPQspVTLTGSVRRNLDPfYRYTDEEGTTFLRETLSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFT--DCTVITIAHRL-STIVDSDVILVMDRGELGEYGSPADLLRdRPEGLFAA 860
                  689************************************************9987765.....33455555543367777777777762455667777788999999998622111334456789***************98753489******************999997544..55666677866.57888********************876268877766 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.9   1.2e-13   8.1e-12      27     223 ..       2     191 ..       1     205 [. 0.77
   2 !   47.7   0.1   4.2e-15   2.7e-13      16     222 ..     648     852 ..     642     863 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.2e-13
    TIGR02142  27 alFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvie..lL....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerls...aelkiPilyvsHsldevarl..adrvvvledGrvkaagkleevlask 223
                  ++ G+ G+Gkt+++ ++ G +   +g +++dg+                 +gyv q A + +  +v +n+  G++  +++ +++ +++ +e  l     g++  +  +  +LsGG  qRv+i+R l     L+lmD+PLaa+D k  + i+  L+rl+   ++ +     +  sl+ +  l   dr+  +e G+v+ +g+ +e+++  
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-----------------LGYVPQTAFIMS-GTVLDNILMGRHLDEPRLTQVLTASHLEedLKslneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknDDRQHRRCGIIMSLNQLSLLpeFDRIYFIEGGKVAETGTYDELVSAG 191
                  578888999999999999988888888888885.................689999887776.478889999999888888888766554322441122455556666678*********************************************97333333444444555666666662258*****************998764 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 4.2e-15
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgieh..Ll...eRlpgkLsGGekqRvaigRAlLssP..eLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222
                  v++ ++  +++++ Gr GsGk+sl+ l+  ++ +++g+++++ + +    ++++l   +   +++ q        svr+nL   ++ ++ e +    e++ + +g+++  L        ++Ls Ge q  +++RAlL +   ++L+mDeP a +D+   + i   ++r  + ++  ++ ++H l+ +   +d ++v++ G +   g+++++l++
  MMETSP1174-20130828|11155_1 648 VSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDV----AGVDLQRLRSSCAVIPQSPVTL-TGSVRRNLDPFYRYTDEEGTTFLRETLSK-VGLDPnvLTeeiGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRD 852
                  5677777789********************************8855....5788988877777777765555.569*****988888888887666666655.577763133111334578****************8854489******************999987..4456789*********987.8*****************999876 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.1e-11   7.2e-10      32     221 ..       4     190 ..       1     206 [. 0.76
   2 !   53.3   0.3     9e-17   5.8e-15      11     221 ..     640     852 ..     631     864 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-11
    TIGR00968  32 lGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir..kkdkakikakveellelvq..leklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklh....de.vkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                  +G  G Gk+t+l ++ G  +  +G++ ++G           ++G+v q  a +   tv dni +G ++   + ++  +  ++ee l+ ++  l+         lsGGq qrv++ar+l     ++l+d+p++a+d kv + + + l++l     d+  +   ++++ +q   l   dri  +e Gk+ + g+ +e+  +
  MMETSP1174-20130828|11155_1   4 VGAVGCGKTTILMAMLGDVDCIAGTLQVDG-----------NLGYVPQT-AFIMSGTVLDNILMGRHLDepRLTQVLTASHLEEDLKSLNegLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvkndDRqHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVSA 190
                  566677777777666666665566655555...........79999986.666778*********99985577788888999998887752355444455778****************9999***************9999988888852221331345678888999999999999999999999999999988764 PP

  == domain 2    score: 53.3 bits;  conditional E-value: 9e-17
    TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd.reiGfvfqhyalfkhltvrdnia.fGleirkkdkakikakveel.lelvqleklgdrypsqlsGGqrqrvalaralavep..qvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                  G   al  v++ +++G+ v+++G +GsGks+ll ++  + +  +Gr++++ rdv+ v++++ r+   v+ +  +    +vr n+  f      + ++  ++ ++++ l+   l++      s+ls G+ q ++laral  +   ++l++dep + +d    + ++a +r+   +   t + ++h  +  ++ +d i v+++G++ + gs++++ ++
  MMETSP1174-20130828|11155_1 640 GLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRlRSSCAVIPQSPVTLTGSVRRNLDpFYRYTDEEGTTFLRETLSKVgLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDC--TVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRD 852
                  66679999**************************************************98747777788777777777888888623333334444444555444323333344434445799***************87753389***********************988765..55567899988887.799***************998754 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   1.4   2.1e-13   1.4e-11       1     190 [.       3     189 ..       3     200 .. 0.76
   2 !   42.8   0.1   1.1e-13   7.2e-12       2     198 ..     661     860 ..     660     864 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 2.1e-13
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrk..vpkaeikervkeaLelvq..leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkal.....qeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                  ++G+ G+Gktt+L+ + G  +  +G + +dg+ +  vp             a+    tv +n+  g ++++  + +   ++  +e L+  +  l++    +   lsGGq qrv++ar++     ++L+D+pl+a+D k+   + + lk+l      ++     +++  +q   l   dri  ++ Gk+a  g+ +e+ +
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-LGYVPQT-----------AFIMSGTVLDNILMGRHLDEprLTQVLTASHLEEDLKSLNegLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvkndDRQHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVS 189
                  689***************9999******9985.6666654...........34444566666666655543113344445666666666553344444455678**********************************98888888888733333355556667888899999***************99999888766 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 1.1e-13
    TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaek.rs.vnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvql.....eefakrkpsqlsGGqrqrvalaravvkkP..kiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy.eePanefva 198
                  +G +GsGk+ lL ll  + e ++G+++++  dv+ v  ++ rs   v+ qs  +    +v  n+    +      +e ++  +e L+ v l     +e      s+ls G  q ++lara+  k   kiL++Dep + +D    +++q  +++  e    tv+ ++h  +  +  sd i v+ +G++   g+p ++  + P+ +f+a
  MMETSP1174-20130828|11155_1 661 VGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRlRSsCAVIPQS-PVTLTGSVRRNLDPFYRY---TDEEGTTFLRETLSKVGLdpnvlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLS-TIVDSDVILVMDRGELGEYGSPADLLrDRPEGLFAA 860
                  799*******************************99865425514444455.444456777777654444...455566667777777765111114555556789****************996559********************98875..445689999999765.7889******************99762568888877 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.87        56      41      72 ..       2      33 ..       1      36 [. 0.83
   2 !   27.5   0.0   6.7e-09   4.4e-07     146     238 ..      90     187 ..      57     205 .. 0.77
   3 !   56.3   0.0   1.1e-17   7.2e-16      12     236 ..     630     847 ..     627     857 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.87
    TIGR02769 41 allGrsGaGkstlarlllGlekPakGevsfrG 72
                 +++G  G+Gk+t+   +lG      G+++  G
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDG 33
                 689**********9999998877777776665 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 6.7e-09
    TIGR02769 146 klPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkkl......kqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvael 238
                   +   lsGGq+qr++iar+l     l+++d+ ++ +d+    +i++ lk+l      +q+    +++    l+l  +f +r+  +++G++ e+ +  el
  MMETSP1174-20130828|11155_1  90 ERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddRQHRRCGIIMSLNQLSLLPEF-DRIYFIEGGKVAETGTYDEL 187
                  455689*******************************************99443333344455556666777777777.67888888888777665555 PP

  == domain 3    score: 56.3 bits;  conditional E-value: 1.1e-17
    TIGR02769  12 yrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldk....lPrqlsGGqlqriniaralaveP..klivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikva 236
                  ++  +l+ + + k+ l +vs+++e+G+ v+++Gr+G+Gks l  ll  + + + G+v+ + +d+a +d    +++r    ++ q   s v    svr+ + +P+ ++t+    e      e l++v+l+++vl        ++ls G lq +++aral  +   k++v+de  +n+d+     i + +++  + +  +++ i+h l+ +   ++ +lv+d+G++ e  + a
  MMETSP1174-20130828|11155_1 630 FEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDL---QRLRSSCAVIPQ---SPVTLTGSVRRNL-DPFYRYTDE---EGTTFLRETLSKVGLDPNVLTEeiggSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPA 847
                  6778999999******************************************************99885...577888888877...4455566777766.566666665...555566788999***998876522225799***************8774449****************999988874..4556778899999998865.899*******998866555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   9.6e-07   6.2e-05      31     165 ..       3     132 ..       2     144 .. 0.67
   2 !   61.4   0.0     3e-19     2e-17       5     179 ..     634     816 ..     630     830 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.6e-07
    TIGR01189  31 veGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsal..EnLkfyaallqseqktveealekv..gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvel 165
                  ++G  G GKtt+L  + G +   +G+++++++        +  +++++     l + L  +  +  +  + l++s   ++ee l+++  gLs        +Ls Gq +R+++ar l     l ++D+P++a+D++  + 
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNL------GYVPQTAFIMSGTVLDNILMGRhlDEPRLTQVLTAS---HLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRG 132
                  678889999999999999999999999998443......233455666666666666654311222222222222...23333433311676666677789********************************986544 PP

  == domain 2    score: 61.4 bits;  conditional E-value: 3e-19
    TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsg..ledl...pvaqLsAGqkrRlalarLllskaplWiL..DEPttalDkegvellaellaaHlargGi 179
                  +l+++ g +  l+g+sf +  G+ + v+G+ G+GK++LL +l  ++++++G+v +n +++a +  ++ +++  +  ++ +  + s++ nL+ + + +++e +  + e+l kvgL+   l++      ++Ls G  + l+lar ll ka + iL  DEPt+++D ++ e+++++++   +   +
  MMETSP1174-20130828|11155_1 634 SLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTDEEGTtFLRETLSKVGLDPnvLTEEiggSGSNLSIGELQLLSLARALLRKAWVKILvmDEPTANMDMATDERIQAVIRREFTDCTV 816
                  6788889999**************************************************99998888888888888999999*******9555555544443899*******9752223321224579****************9996655433*****************99987665444 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.039       2.6      31      65 ..       3      37 ..       1      51 [. 0.86
   2 !   34.1   0.0   5.2e-11   3.4e-09     135     237 ..      83     190 ..      47     194 .. 0.86
   3 !   16.4   0.0   1.4e-05   0.00089      14      62 ..     643     691 ..     630     700 .. 0.88
   4 !   26.6   0.0     1e-08   6.8e-07     144     237 ..     760     852 ..     742     858 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.039
    TIGR03005 31 liGpsGsGkstilrilmtletideGsikvegeqly 65
                 ++G  G Gk+til  ++       G+++v+g+  y
  MMETSP1174-20130828|11155_1  3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNLGY 37
                 799**********98888777779******99766 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 5.2e-11
    TIGR03005 135 GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetd......ltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                  Gl+    +  + lsGGq qrv+iar+l     ++l+d++ +a+d ++   +++ l+rl+ ++d        +++   ++ +  ef dr+ f + Gk++e G  de+   
  MMETSP1174-20130828|11155_1  83 GLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKNDdrqhrrCGIIMSLNQLSLLPEF-DRIYFIEGGKVAETGTYDELVSA 190
                  777777888899***************9999999************************9765533333367899999******99.9*****************99765 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.4e-05
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvege 62 
                    l g+++ +++G++v ++G +GsGks++l +l+ + + + G++ +++ 
  MMETSP1174-20130828|11155_1 643 PALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINAR 691
                  57999**************************************999876 PP

  == domain 4    score: 26.6 bits;  conditional E-value: 1e-08
    TIGR03005 144 paqlsGGqkqrvaiaralalrp..kvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                   ++ls G+ q +++aral  +   k+l++de+t+ +d    e + +v+rr  + td t++ ++h++    + +d +l +d+G + e G p +++r+
  MMETSP1174-20130828|11155_1 760 GSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRD 852
                  5789**************87744499***********************9..56899*********99988.8*******************9985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.085       5.5      16      37 ..       2      23 ..       1      41 [. 0.76
   2 !   26.3   0.0   1.4e-08   9.2e-07     125     215 ..      94     189 ..      63     196 .. 0.90
   3 !   52.2   0.0   1.7e-16   1.1e-14       3     217 ..     646     854 ..     644     865 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.085
    TIGR02770 16 alvGesGsGksltalailglld 37
                 ++vG+ G+Gk++  +a+lg  d
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLGDVD 23
                 79***************99766 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.4e-08
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleel......rekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                   lsGG +qRv ia +l     l++ D+P +++Dv+v   + + l++l      r++r  gi++    l+ + e+ d ++ +e Gk+ e+gt +el++
  MMETSP1174-20130828|11155_1  94 TLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvknddRQHRRCGIIMSLNQLSLLPEF-DRIYFIEGGKVAETGTYDELVS 189
                  79******************************************999444444466779************997.99*************9999876 PP

  == domain 3    score: 52.2 bits;  conditional E-value: 1.7e-16
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkk...ypfelsGGmlqRvmialalllea..plliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq.eP 217
                  ++v++ + +g+ +++vG  GsGks     +l ll   + +++G+++++ +++a + l+    ++a+i q+P++    +       +  l    + + ++ +  + e+l++vgL+ ++ + ++      +ls G lq + +a all +a   +l+ DePt+++D+++  ++   ++  re ++ +++ i+h l+ +    d ++vm++G++ e g++ +l+  +P
  MMETSP1174-20130828|11155_1 646 RGVSFAIEHGQRVGVVGRTGSGKSS----LLVLLFRIVEASAGRVMINARDVAGVDLQRlrSSCAVIPQSPVTLTGSV-------RRNLDPFYRYTdEEGTTFLRETLSKVGLD-PNVLTEEiggSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIR--REFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRdRP 854
                  689********************95....56666666779**************955431135667779998655444.......44444444444377888899********9.44443431115789****************998446899****************99998..588899**********9987.799*************9999987455 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.4   1.8e-13   1.2e-11      39     229 ..       3     189 ..       1     198 [. 0.83
   2 !   43.0   1.4   9.7e-14   6.3e-12      12     238 ..     631     860 ..     624     870 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1.8e-13
    TIGR03258  39 llGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lrarkqskaliaervadalklv..qlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpe....ltvlyvthdrdealvladkillmkeGslialGetralyd 229
                  ++G  G+Gktt+l a+ G v    G+l v +           nl+ + q  a+    +v +n+ +G  l   + ++ l a  + + lk +  +ls    +    lsGGq qrv++ar+l     ++l+d+pl+a+d ++   + + lk+l  +  +       ++++ ++   l   d+i ++  G++++ G+  +l  
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-----------NLGYVPQT-AFIMSGTVLDNILMGrhLDEPRLTQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKNDDrqhrRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVS 189
                  79*************************9976...........55655554.5666779999999995556779999999*********873468888888999**********************************************97554431111445667788888899999999999999999999887765 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 9.7e-14
    TIGR03258  12 eslrvay..garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppyk.rnlallvqnyalfphlkveenvafGlrar.kqskaliaervad.alklvqlsdaaarlpaqlsGGqqqrvalaralvvrp..dvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfvae 238
                  e+ ++ y  g +  l  +s+ ie G+ + ++G++GsGk++ll ++   v+a+ Gr+++  rd++ +   + r+ + ++ +  +     v  n+    r       + + e +++  l    l++      ++ls G  q ++laral  +   ++l++dep + +d    + ++     + re+ + tv+ ++h r  ++v +d il+m  G+l ++G + +l    ++++ a 
  MMETSP1174-20130828|11155_1 631 EDASLVYrtGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRlRSSCAVIPQSPVTLTGSVRRNLDPFYRYTdEEGTTFLRETLSKvGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAV---IRREFTDCTVITIAH-RLSTIVDSDVILVMDRGELGEYGSPADLLRDRPEGLFAA 860
                  55455441144678999**********************************************98765442444444444455555678888865555440455555555555424666667777778899****************98863377999***999998776666544...56899*********9.677899*******************99887666665544 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00034     0.022      22      54 ..       2      34 ..       1      42 [. 0.93
   2 !   15.9   0.0   2.3e-05    0.0015     126     174 ..      93     141 ..      69     149 .. 0.88
   3 ?   -0.7   0.0       2.8   1.8e+02     134     184 ..     238     288 ..     218     290 .. 0.88
   4 !   51.9   0.2   2.1e-16   1.4e-14       7     182 ..     644     819 ..     638     825 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00034
    TIGR01166 22 allGanGaGkstlllhlnGllrPksGkvlldGe 54
                 +++Ga G+Gk+t+l+ + G +   +G++ +dG+
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN 34
                 689****************************96 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.3e-05
    TIGR01166 126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr 174
                   +lsgG+ +rv+ia  +     ++l+d+P a +d +  + + + l++l+
  MMETSP1174-20130828|11155_1  93 VTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLT 141
                  479*************99999999************9999999999987 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 2.8
    TIGR01166 134 krvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvist 184
                   r+a+ +  +  +  +  deP   ++p+   ql++  +++     t v+st
  MMETSP1174-20130828|11155_1 238 SRIATVSKAVTSTSAVEDDEPILVVEPDASAQLVKKDHEISGGHSTAVLST 288
                  688888888888888889*****************9999999999999998 PP

  == domain 4    score: 51.9 bits;  conditional E-value: 2.1e-16
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdis..gleer...pthllsgGekkrvaiagavalrp..dvllldePtagldpaGaeqlleilrklreeGktvvi 182
                  +l+g+++a+e+g++++++G+ G+Gks ll  l  ++   +G+v+++ ++++    +l +lr   a++ q p    ++ +v +++         +++e ++ +re l++v+++   l e      + ls Ge + +++a a+  ++  ++l++dePta++d a  e++ +++r+   + + + i
  MMETSP1174-20130828|11155_1 644 ALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVA--GVDLQRLRSSCAVIPQSPV--TLTGSVRRNLDPFY---RYTDEEGTTFLRETLSKVGLDpnVLTEEiggSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITI 819
                  89********************************************99886..689*************996..57888888765333...467899999*********99732355542224689***************9997447899********************997666655544 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.1   3.6e-15   2.4e-13      10     161 ..       2     142 ..       1     202 [. 0.77
   2 !   32.3   0.6   2.6e-10   1.7e-08       2     200 ..     651     850 ..     650     857 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 3.6e-15
    TIGR03771  10 gllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaava.dalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag 161
                  g++G  G Gktt+l a+lg +   +G+++v+g+        +Gyvpq    a+     v + +l Gr      l +   a +   + ++l++   te+ +r v  lsGGq qrv +ar+l     l+l+d+p++ +d+     + + ++ l+ 
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN--------LGYVPQT---AFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDlKSLNEGLSTEVGERGV-TLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTV 142
                  78999***************************5........******7...566778999*******988888888888888765436788888899****99.5********************************9877666666666553 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 2.6e-10
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra.gliGll.rrpkkadfaavadalervklt.eladrpvG....elsGGqrqrvlvaralavkp..slllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200
                   +++G+ +g++G  G+Gk++ll  ++ ++++++G+v ++++         G   qr   +    i  + + l+G   +++ ++ r + ++  +  +++l++v l  ++    +G    +ls G+ q + +aral  k   ++l++dep + +d+ + e++  +++     + +++  +h l+  v++   +v+  g++   g+p++l 
  MMETSP1174-20130828|11155_1 651 AIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARD------VAGVDLQRLRSSCA-VIPQSPVTLTGSVrRNLDPFyRYTDEEGTTFLRETLSKVGLDpNVLTEEIGgsgsNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF-TDCTVITIAHRLSTIVDSDVILVMDRGELGEYGSPADLL 850
                  5789***********************************962......23333455444433.34444455555441345555166667778889********9644556666645557***************988633789*****************99988755.567888999*****9998777777778888888888875 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.6     2e-07   1.3e-05     116     223 ..      86     222 ..       1     278 [. 0.63
   2 !   54.4   0.1   3.9e-17   2.5e-15       7     212 ..     643     850 ..     638     879 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2e-07
    TIGR01188 116 eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke..g.....vtilltthyleeadkladrvaiidkGkiiaedtpeeLKe.......................rvgkevveve 223
                      ++  t+sgG+ +r+++a+sl     ++ +D+P   +D++  r i + ++ l  +  +       i+++ ++l    ++ dr+  i+ Gk++ ++t +eL +                       ++++++  ve
  MMETSP1174-20130828|11155_1  86 TEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKndDrqhrrCGIIMSLNQLSLLPEF-DRIYFIEGGKVAETGTYDELVSagkgfsifvqsglsskdtddapdSLQANTSAVE 222
                  3444444589**************************************9999887432212111114566666666655554.9*******************97666666666666655444444442222222222 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 3.9e-17
    TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvel.....keaadkkvktysgGmrrrlelaasliaqP..evlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212
                   A++gv++ +e+g+ +g++G  G GK+ ++ +L  +++ ++G+++++  Dv   + +++R s +v+pq+     +Lt+    +l   +y +  +e     +e l  v l     +e       ++s G  + l+la++l+ +   ++l +DEPt  +D  t + i  +i+    ++ t++  +h l  +   +d + ++d+G++   ++p +L 
  MMETSP1174-20130828|11155_1 643 PALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGvDLQRLRSSCAVIPQSPV---TLTGSVRRNL-DPFYRYTDEEGTTFLRETLSKVGLdpnvlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF-TDCTVITIAHRLSTIV-DSDVILVMDRGELGEYGSPADLL 850
                  69*************************************************8537789**********975...4666544333.46788888888888888888887721111444455556899**************9964478999*****************999764.689*********9875.48****************99985 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.3   2.1e+02      35      51 ..       2      18 ..       1      35 [. 0.70
   2 !   26.0   0.0   1.4e-08     9e-07      93     249 ..      43     206 ..      29     225 .. 0.74
   3 !   45.1   0.0   2.1e-14   1.4e-12      19     230 ..     643     851 ..     628     864 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 3.3
    TIGR02314 35 gvigasgagkstlircv 51
                 g++ga g gk+t++  +
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAM 18
                 99**********98654 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.4e-08
    TIGR02314  93 llssrtvfgnvalplelentpkekikr..kvte.llalv.glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkei.....nrrl.gltillithemdvvkricdevavidkgeliekgtvseifshpktelakkfirstldlsi 249
                  ++ s tv++n+ +   l++    ++ +  +++e l +l  gls         lsggq qrv+iar+l     ++l d+  +a+d    + i++ lk +     +r+     i++   ++ ++ +  d++  i++g++ e gt  e+ s  k      f++s l  + 
  MMETSP1174-20130828|11155_1  43 FIMSGTVLDNILMGRHLDEPRLTQVLTasHLEEdLKSLNeGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtvkndDRQHrRCGIIMSLNQLSLLPE-FDRIYFIEGGKVAETGTYDELVSAGKGF--SIFVQSGLSSKD 206
                  5678899999999999998877776541145542666645999999999******************************************999887622222344313455666666666655.5889999999999999999999887753..456666665555 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 2.1e-14
    TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvgl.....sdkkdsypsnlsggqkqrvaiaralasep..kvllcdeatsaldpattqsilellkeinrr.lgltillithemdvvkricdevavidkgeliekgtvseifs 230
                   al  vs+ + +gq +gv+g +g+gks+l+  +  + + + g v+++ +d++     +l + r    +i q    l+  +v  n+     +   + e+  + + e l+ vgl     ++      snls g+ q +++aral  +   k+l+ de t+ +d at + i  +++   r+  + t++ i+h +  +    d + v+d+gel e g+ ++++ 
  MMETSP1174-20130828|11155_1 643 PALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAG---VDLQRLRSSCAVIPQSPVTLTG-SVRRNLDP---FYRYTDEEGTTFLRETLSKVGLdpnvlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIR---REfTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLR 851
                  4899*************************9999999999**********9876...589999999****997766654.45555543...33455666778889999999963333377888999*****************87743499*****************998865...4414799*******987754.69999*********999988765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3     5e-09   3.2e-07      30     209 ..       4     180 ..       1     183 [. 0.59
   2 !   40.3   0.3   8.2e-13   5.3e-11      18     206 ..     649     839 ..     641     845 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 5e-09
    TIGR01277  30 lGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlk...pglk..lnavqke.kvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkla......dekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  +G  G Gk+t+l  + G +  + G+++v+++  ++  p             +    tv +ni +G +   p l   l+a + e  ++  + + G++  +      lsGGq qrv++ar l   + ++l+d+p++a+d k+ + ++  +k+l+      ++++  +++   +l  +    +++ ++e Gk++ 
  MMETSP1174-20130828|11155_1   4 VGAVGCGKTTILMAMLGDVDCIAGTLQVDGN--LGYVPQTA----------FIMSGTVLDNILMGRHldePRLTqvLTASHLEeDLK--SLNEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrQHRRCGIIMSLNQL-SLLPEFDRIYFIEGGKVAE 180
                  6666666666666666666666666666653..33344321..........122235555555554322233321133332220222..2334666666666789**********************************988777666555422211133334455555555.5667789999999999986 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 8.2e-13
    TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkek.vedvarqvGia.dyl.erl...peelsGGqrqrvalarclvrek..pillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGk 206
                  ++++e+G+rv ++G +G+Gks+ll l+   +e   G +++n +d+ ++   +   s     +   + +t+   +   l+p  + + ++    +++   +vG++ + l e +     +ls G+ q ++lar l+r+    il++dep + +d +  e + a++++     + t++ ++h+ls ++ + + ++v++ G+
  MMETSP1174-20130828|11155_1 649 SFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQ---SPVTLTGSVRRNLDPFYRYTDEEGTTfLRETLSKVGLDpNVLtEEIggsGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREF--TDCTVITIAHRLSTIVDS-DVILVMDRGE 839
                  67899****************************************99887665444433332...45667777777789****9999876526888999**98433324441115689****************973368999*******************9865..689*********987764.6677777776 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.43        28      39      67 ..       3      31 ..       1      42 [. 0.86
   2 !   15.5   0.0     3e-05    0.0019     149     186 ..      94     131 ..      86     144 .. 0.86
   3 !   29.5   0.0   1.5e-09     1e-07      21      77 ..     642     699 ..     635     708 .. 0.87
   4 !   16.5   0.0   1.4e-05   0.00092     149     208 ..     762     822 ..     758     833 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.43
    TIGR02324 39 lsGksGaGkstllkslyanYlpesgrilv 67
                 + G+ G Gk t+l ++ ++  + +g+++v
  MMETSP1174-20130828|11155_1  3 IVGAVGCGKTTILMAMLGDVDCIAGTLQV 31
                 789*************9999988888776 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3e-05
    TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrk 186
                  t sGG  qRv iar+l   + ++L+d+P a++d +  +
  MMETSP1174-20130828|11155_1  94 TLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGR 131
                  99*****************************9976554 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.5e-09
    TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrheg.eivdlv 77 
                   p+l+ vs+++e G+ v + G++G+Gks+ll  l++   +++gr+++++++ + vdl 
  MMETSP1174-20130828|11155_1 642 KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDvAGVDLQ 699
                  5899*******************************************98762346665 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1.4e-05
    TIGR02324 149 tfsGGekqRvniaraliad..rPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                    s Ge q + +aral+ +    iL++dePta +d a+ + +  +i++   + +++i+i h 
  MMETSP1174-20130828|11155_1 762 NLSIGELQLLSLARALLRKawVKILVMDEPTANMDMATDERIQAVIRRE-FTDCTVITIAHR 822
                  5788************9862246899*************9888888876.567999999995 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.6     5e-08   3.3e-06      16     162 ..       3     144 ..       1     186 [. 0.77
   2 !   41.1   0.0   4.7e-13   3.1e-11       1     208 [.     645     855 ..     645     874 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5e-08
    TIGR01184  16 lighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgalda.ltreelqe.kllkive 162
                  ++g  gcgk+t+l  + g     +g+++++g+    p           +++   tv +ni +  +   + l++    + +ee+++ +  gl++    r   lsgg  qrv+iar+l     l+l+d+p+ a+d  + r+ +q  k l + +
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNLGYVPQ---------TAFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVkVGRGIFQSlKRLTVKN 144
                  78999******9999999999999******98655443.........3455668999****999999999999999999999998763368888889999*********************************734555555422334443 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 4.7e-13
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwl..tvrenialavdavlrdlskserreiveehielvgl.....reaadkrpeqlsggmkqrvaiaralsirp..klllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeilevplerpr 208
                  l++v++ i++g+ + ++g +g gks+ll l+  + + ++g v+++ +++     +r+      +++p    t    +   +d   r  + +e  + ++e+++ vgl     +e      ++ls g  q +++aral  +   k+l++dep   +d  t e +q  + +  e +++tv+ ++h +  +++ sd ++++  g   + g   ++  +rp 
  MMETSP1174-20130828|11155_1 645 LRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRL--RSSCAVIPQSpvTLTGSVRRNLDPFYR-YTDEEGTTFLRETLSKVGLdpnvlTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR--EFTDCTVITIAHRLS-TIVDSDVILVMDRGELGEYGSPADLLRDRPE 855
                  578999******************************************986666665..566777776511445566666666554.4556778888888888887211114455566789***************87643399*******************87765..45679********96.67899*9999999999998888887777776 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.7e-11   1.1e-09     484     631 ..       3     142 ..       2     152 .. 0.86
   2 !   27.3   0.0   3.9e-09   2.5e-07     454     654 ..     629     837 ..     625     844 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.7e-11
    TIGR00954 484 iiGPnGcGKssl.fRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi 631
                  i+G  GcGK  + + +lg++   ++g+l++  +g+l yvPq  ++  gt+ d i+        + r l +  L+q+L   +Le+ l+  + g+++ v +    LsgG+ qR+++AR +y     +++D+  +Av v v   +++ +k++ +
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTIlMAMLGDVDC-IAGTLQV--DGNLGYVPQTAFIMSGTVLDNIL--------MGRHLDEPRLTQVLTASHLEEDLKSlNEGLSTeVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTV 142
                  8999*****9971567788765.5677766..589******************97........5688999999999999999876654377777538888889*******************************************99865 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 3.9e-09
    TIGR00954 454 kfeniplvtPegdv.lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLe.dllereggwdavqdWkdvLsgGekqRiamARlfyHkP..kfavLDEctsAvsvdvEdklyelake..vgitllsvshrksLwkyHeylLkldg 654
                   fe+  lv   g +  +  +sf +++G+ + ++G  G GKssl  +l  +    +           g+  +  ++    +Pq P   +g++R  +    + +d    + +   L + L++v L+ ++l++e+g +        Ls+Ge q +++AR +  k   k  v+DE t+ + +  ++++   +++  ++ t+++++hr s +   + +L +d+
  MMETSP1174-20130828|11155_1 629 TFEDASLVYRTGLKpALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAgrvminardvaGVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFYRYTD----EEGTTFLRETLSKVGLDpNVLTEEIGGSG-----SNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRRefTDCTVITIAHRLSTIVDSDVILVMDR 837
                  556666665555432467789*********************9777777766666566667788887777777788889*************98632222222....33556799********8689999999875.....67*****************974477889*****************999844589**********9999999999994 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.7   1.8e-09   1.2e-07     100     255 ..      34     188 ..       2     197 .. 0.74
   2 !   32.9   0.0   8.5e-11   5.6e-09      31     251 ..     635     846 ..     609     851 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.8e-09
    TIGR00955 100 isayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkla.......qkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                  + +yv q   fi + tv +++ +  hl  +r lt+       ee l+  +L++   t +g  g   +lSgG+ +R+++a  l     l+++D+P +  D      + + Lk+l+       +++  +i+++ Q s  l   fd+i++++ G+v+ +G+ +e+v
  MMETSP1174-20130828|11155_1  34 NLGYVPQTA-FIMSGTVLDNILMGRHLDEPR-LTQVLTASHLEEDLK--SLNEGLSTEVGERG--VTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTvknddrqHRRCGIIMSLNQLS--LLPEFDRIYFIEGGKVAETGTYDELV 188
                  456776654.566667777777777776666.555555555555554..578999999**777..59**********************************************93333221234468******76..99******************999987 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 8.5e-11
    TIGR00955  31 larkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek...veakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadt.rigvpgrvkglSgGerkRlalaselltdP..ilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGsp 251
                  l+ + + k  l++vs +++ G+ + v+G  G+GK+ Ll  l fr  + + +   v++n +    v+ + +r  +a + q  + +   +vr +L      r    +t +e      e l+++gL     t  ig  g    lS+Ge + l+la  ll +   ++L++DEPT+ +D ++   +  v+++  +   tvi+  H  s  + +  d i+++++G     Gsp
  MMETSP1174-20130828|11155_1 635 LVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLV-LLFRIVEASAG--RVMINARDvagVDLQRLRSSCAVIPQSPVTLT-GSVRRNL--DPFYR----YTDEEGTTFLRETLSKVGLDPNVLTeEIGGSG--SNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDC-TVITIAHRLSTIV-D-SDVILVMDRGELGEYGSP 846
                  4555678899***************************95.66777777666..79999886222578899999******987543.2444444..44444....55689999***********9877663699666..59****************9964489***********999998888888766654.5777777765433.3.377888888876655555 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.2e-05    0.0034      30     203 ..       2     179 ..       1     190 [. 0.77
   2 !   48.1   0.0   3.7e-15   2.4e-13      13     203 ..     642     841 ..     631     862 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.2e-05
    TIGR03740  30 gllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivd..lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldP.l..Gi.qelreliksf...pekGitvilsshilsevelladhiGiiseGklk 203
                  g++G  G+Gk+t+l  + G +   +G + +dg+           ++i s ++ +n+     l    l++ l  s++ee lk ++  l+++   +   +s G  qr+ ia +l     l+++d+P   +d  +  Gi q l++l       +++   +i+s   ls + +  d i +i+ Gk+ 
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDGNLG----YVPQTAFIMSGTVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLNegLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVkVgrGIfQSLKRLTVKNddrQHRRCGIIMSLNQLSLLPE-FDRIYFIEGGKVA 179
                  789****************************9753....3344678888888888888888998899999999999999998754488888899999*****************************9995222255477777754331113345677777777776655.4777777777765 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 3.7e-15
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkki...GsliesPalyenltarenlkvrtlllglp.esrieevlkivdle.....ntekkkakqfslGmkqrlGiaiallnkP..kllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                  + ++  vs+++++ +  g++G  G+Gks+ll ll  +++ ++G++++++r+++  dl+ +    ++i + ++    + r nl       + + ++ + e l++v+l+     ++     +++s+G  q l +a all+k   k+l++dePt  +d    + ++ +i+   +   tvi  +h ls +   +d i ++  G+l+
  MMETSP1174-20130828|11155_1 642 KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLrssCAVIPQSPVTLTGSVRRNLDPFYRYTDEEgTTFLRETLSKVGLDpnvltEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFT-DCTVITIAHRLSTIVD-SDVILVMDRGELG 841
                  568899*********************************************9998887662226799999999999999***97666655441566899*****98621111333456789****************996559*************999999999986443.47899999***99854.7899999999886 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3      0.17        11     314     343 ..       2      31 ..       1      38 [. 0.84
   2 !   13.5   0.0   6.4e-05    0.0042     168     258 ..      94     189 ..      40     194 .. 0.77
   3 !   17.5   0.0   3.9e-06   0.00025      14      60 ..     643     687 ..     631     702 .. 0.66
   4 !   26.4   0.0   7.6e-09     5e-07     406     518 ..     741     852 ..     731     862 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.17
    TIGR03269 314 GlvGtsGaGkttlskilaGvleptsGevev 343
                  G+vG  G Gktt+   ++G ++  +G ++v
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQV 31 
                  899999999999999999988888887766 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 6.4e-05
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkea.vkeed....islvltshwpeviedlsdkaillekGeiveeGepeevva 258
                   lsGG+ qrv +ar l     l+l d+p  ++d k    + + lk+  vk++d     + ++ s     +    d+  ++e G++ e+G+ +e+v+
  MMETSP1174-20130828|11155_1  94 TLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLtVKNDDrqhrRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTYDELVS 189
                  69***************9999999**************9999998862555442222233444544444444468999999999999999999876 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 3.9e-06
    TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                   +l+ +s+ +e G+ +G++G++G+Gks ll ll  + e  ++ G+++
  MMETSP1174-20130828|11155_1 643 PALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVE--ASAGRVM 687
                  46777777777777777777777777766666543322..3444444 PP

  == domain 4    score: 26.4 bits;  conditional E-value: 7.6e-09
    TIGR03269 406 vlkavGfdeekakeildklpdelseGerhrvalaqvlikep..rivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
                  +l  vG+d +  +e +    ++ls Ge   ++la+ l+++   +i+++dept  md  t  +++  i   re  + t + ++h +  + +  d + +m  G + + G+p++++++
  MMETSP1174-20130828|11155_1 741 TLSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIR--REFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRD 852
                  788889988888888888999******************964489******************99884..5666779999*****99988.699999************999986 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.038       2.5     120     165 ..      81     126 ..       1     145 [. 0.69
   2 !   49.8   0.0   1.1e-15   7.2e-14       8     208 ..     635     838 ..     628     842 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.038
    TIGR03522 120 lvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGld 165
                  + Gl++e   +   ls G  qrv +a++l     ++++d+P + +d
  MMETSP1174-20130828|11155_1  81 NEGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVD 126
                  348999999999999**************99999999999998887 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.1e-15
    TIGR03522   8 lsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqh.kki....galskGyrqrvGlakallhdP..kvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkG 208
                  l+   g + al  vsf++e+G+ vG +G  G+Gks+l+ +l   ++a++G v+++  dv    l+  r +   +P   P+ l   vr  l+     y+ ++++    ++e + +vGl ++     i    ++ls G  q   la+all +   k+l++dePt+ +d      i++vi++   d tvi  +h +  +    d ++++++G
  MMETSP1174-20130828|11155_1 635 LVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQrLRSSCAVIP-QSPVTLTGSVRRNLD---PFYRYTDEEGTTFLRETLSKVGLDPNVLtEEIggsgSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVD-SDVILVMDRG 838
                  5555678899*************************************************9876651666677777.58*********9996...679999999999999*******9887541445222268****************9973367899*****************************99887654422.2333344555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   7.8e-08   5.1e-06     352     486 ..       2     137 ..       1     143 [. 0.78
   2 !   15.0   0.0   2.4e-05    0.0016     321     382 ..     628     689 ..     608     704 .. 0.70
   3 !   14.9   0.0   2.5e-05    0.0016     161     235 ..     762     839 ..     754     848 .. 0.59

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 7.8e-08
    TIGR03719 352 GviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrdalddnktvweeisdGl..dllklgkvevnsr..ayvgrfnf.kGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeal 486
                  G++G+ G+Gk+t++  + g+ +  +G+l++    +l+yv q+   +  + tv ++i  G+  d  +l +v   s     + ++n    ++   +  +lsGG+ +rv +a+ l   + ++l+d+P   +dv+  r + ++l
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDG--NLGYVPQTAFIM--SGTVLDNILMGRhlDEPRLTQVLTASHleEDLKSLNEgLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSL 137
                  9****************************975..79*****86655..679*****99972255556665555541123344443133445556668*********************************9877776666 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.4e-05
    TIGR03719 321 kvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiG 382
                    +e  +l  + g k  +  +sf + +g  vGv+G  G+Gks l+ l+    +  +G++ i 
  MMETSP1174-20130828|11155_1 628 ITFEDASLVYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMIN 689
                  55555555556666666777788888888888888888888888888777777777777663 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 2.5e-05
    TIGR03719 161 klsGGekrrvalcrlllekP..dlllldePtnhldaesvaWlekflk.eyk.GtvvavthdryfldnvaeWileldrGe 235
                  +ls Ge + ++l+r ll k    +l++dePt  +d  + + ++  ++ e++  tv+ ++h    +   ++ il +drGe
  MMETSP1174-20130828|11155_1 762 NLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRrEFTdCTVITIAHRLSTI-VDSDVILVMDRGE 839
                  56667777777777777664335667777777777766666666654245414555565543332.2245666666666 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.6   0.00042     0.027      33     177 ..       3     128 ..       1     145 [. 0.71
   2 !   38.5   0.1   3.1e-12     2e-10      17     225 ..     644     845 ..     631     854 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00042
    TIGR03411  33 iiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadk.svlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtde 177
                  i+G+ G Gktt+l ++ G +   +G+++++g+ l                 q++ +  + tvl+n+ +  + d+ +++++l+a   +e+ ++++e     gL++++ ++  +Ls Gq q++ i+  l     l+l+D+P a +  +
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN-LG-------------YVPQTAFI-MSGTVLDNILMGRHLDEpRLTQVLTASHLEEDLKSLNE-----GLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVK 128
                  67777777777777777777777777776653.33.............33344443.35689999999887665155566655555555555554.....78899999********************************987665 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 3.1e-12
    TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlall.farlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqep..kllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGs 225
                  al+ +s+++e+g+   ++G  G+Gk+ ll ++   +++++G+v+++ +d+++++ +++ r+  +   q+p v  + +v++nl+  ++   +  +++ +++lsk         l+   L+e+     ++Ls G+ q L ++  l++++  k+l++DeP+a m  +  e++  ++++   +++v+ + h ++ + +  + + v+ +G++   Gs
  MMETSP1174-20130828|11155_1 644 ALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRL-RSSCAVIPQSP-VTLTGSVRRNLDPFYRYTDEEGTTFlRETLSK-------VGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLSTIVDS-DVILVMDRGELGEYGS 845
                  8999************************************************998876.55566666777.66678999999977766555444440222222.......2356667889999999*************998888754489*************************************9988774.4577888888766665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.9e-07   2.6e-05     122     210 ..      48     140 ..      37     277 .. 0.72
   2 !   16.5   0.1     1e-05   0.00067      31      88 ..     636     693 ..     628     706 .. 0.87
   3 !   14.3   0.0   4.7e-05    0.0031     163     255 ..     761     852 ..     736     870 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.9e-07
    TIGR03415 122 tveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellel 210
                  tv +n+ +G  l+     ++    + + +l +l+e   + vge    lsGG  qrv +ar++     ++lmd+P++a+d  +   +   l +l
  MMETSP1174-20130828|11155_1  48 TVLDNILMGRHLDEPRLTQVLTASHLEEDLKSLNEGLSTEVGErgvtLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRL 140
                  788888888888776666666665555556666666666665555559***************99**************87766665555544 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1e-05
    TIGR03415  31 ldktGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedk 88 
                  + +tGl  + +++s+ +e+G+ + ++G +GsGkssll  + ++   s G+v+++  d 
  MMETSP1174-20130828|11155_1 636 VYRTGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDV 693
                  6689999999*******************************************98774 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 4.7e-05
    TIGR03415 163 gelsGGmqqrvGlarafatea..dillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlk 255
                   +ls G  q + lara+  +a  +il+mdeP + +d    +++q  +   ++    t++ ++h l   +   + i +m+ G +  +g+p +++++
  MMETSP1174-20130828|11155_1 761 SNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIR--REFTDCTVITIAHRLSTIVD-SDVILVMDRGELGEYGSPADLLRD 852
                  57999999*********99985589*************9999997543..345578*********98765.67899*************999875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   0.00025     0.016     107     184 ..      68     143 ..       1     227 [. 0.70
   2 !   38.0   0.2     3e-12     2e-10      19     189 ..     644     818 ..     627     875 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00025
    TIGR01288 107 lstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllar 184
                  l++ ++ee + sl e   l +    r  +lsgg  +r+++ar+l     l+++d+p + +d +    i++ l+ l  +
  MMETSP1174-20130828|11155_1  68 LTASHLEEDLKSLNEG--LSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVK 143
                  5566777777777664..55666778889**********************************999999999988765 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 3e-12
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstre.i.eevipsllefarleskadvrvadlsggmkrrltlaralindp..qllildepttgldpharhliwerlrsllargktil 189
                   +  +sf+i +g+  g++g  g+gks++  l++ ++  + g++ +   +v +   +  r+   v+pq   + +  +vr nl  f ry   +  + + e+     l+   l        ++ls g  + l+laral+     ++l++dept+ +d  +   i   +r  ++    i 
  MMETSP1174-20130828|11155_1 644 ALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGvDLQRLRSSCAVIPQS-PVTLTGSVRRNLDPFYRYTDEEGTTfLrETLSKVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVIT 818
                  56679**************************************9988888762456779999*****6.5778899***********98875552524444556999*****************************9853489***********9887777666666555444443 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.071       4.6      31      59 ..       2      30 ..       1      45 [. 0.86
   2 !   11.5   0.0   0.00051     0.033     140     187 ..      93     144 ..      80     192 .. 0.68
   3 !   20.2   0.0   1.1e-06   7.1e-05      17      72 ..     643     701 ..     630     719 .. 0.87
   4 !   11.4   0.0   0.00055     0.036     140     221 ..     761     845 ..     734     859 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.071
    TIGR02323 31 givGesGsGkstllkalaarlladaGevt 59
                 givG  G Gk+t+l a+ + +   aG+++
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQ 30
                 89************999988888777765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00051
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll..llrglvre 187
                   ++sGG  qr+ iar+l     lv+m +p   + v v   ++  l r  v++
  MMETSP1174-20130828|11155_1  93 VTLSGGQMQRVSIARSLYGMHGLVLMdDPLAAVdVKVGRGIFqsLKRLTVKN 144
                  689***********************88988877777666555444444543 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.1e-06
    TIGR02323  17 kgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsr.elellal 72 
                   ++r vsf +  G+ +g+vG +GsGks+ll  l   + a+aG v  + r+   ++l +l
  MMETSP1174-20130828|11155_1 643 PALRgVSFaIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVaGVDLQRL 701
                  566679**999**************************************9756677665 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 0.00055
    TIGR02323 140 aafsGGmqqrlqiarnlvtrp..rlvfm.eptGGl.vsvqarll.llrglvrelglaviivthlavarllaqrllvmkqGrvvesGl 221
                  +++s G  q l +ar+l+ +   ++++m ept  + ++ + r+  ++r+  +  + +vi ++h   + + ++ +lvm +G++ e G 
  MMETSP1174-20130828|11155_1 761 SNLSIGELQLLSLARALLRKAwvKILVMdEPTANMdMATDERIQaVIRREFT--DCTVITIAHRLSTIVDSDVILVMDRGELGEYGS 845
                  677889999********988644777888******999****9988998888..568899999555668899********9988875 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.4e-05   0.00088    1969    2112 ..       2     136 ..       1     196 [. 0.61
   2 !   22.3   0.0   4.3e-08   2.8e-06     940    1147 ..     639     849 ..     620     870 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    TIGR01257 1969 gllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgv.paeeiekvanwsiksl..glslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwnt 2112
                   g++g  g+gktt +  + gd    +g   v g     n+  v q+  +      +d++l gr hl    rl  v  a  +e+     +ksl  gls        t sgg+ +++s a +l g   lvl+d+p + +d +  r ++++
  MMETSP1174-20130828|11155_1    2 GIVGAVGCGKTTILMAMLGDVDCIAGTLQVDG-----NLGYVPQT-AFIMSGTVLDNILMGR-HLDE-PRLTQVlTASHLEED----LKSLneGLSTEVGERGVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQS 136 
                   55666666666666666666666666555554.....23333332.2333345567777776.4443.444444144444442....233222666666666677777777777777777777777777777777776666655544 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 4.3e-08
    TIGR01257  940 psgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilf..yaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgda..kvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplfl 1147
                      +pa+  +  ++   q   ++g  g+gk++ l +l  ++  ++g v++  +d+   +l+ +r s  + pq  + +      +   f  y++  g ++    l  +  l+   l         +ls g  + ls+a a++  a  k++v+dept+ +d  +   i  ++ +  +  t+i  +h +    +  d i ++ +g l   g+p  l
  MMETSP1174-20130828|11155_1  639 TGLKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAgVDLQRLRSSCAVIPQSPVTLTGSVRRNLDPFyrYTDEEGTTFLRETLS-KVGLDPNVLTEEIGGSGSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRREFTDCTVITIAHRLST-IVDSDVILVMDRGELGEYGSPADL 849 
                   555788888888889999999*********************************97369**************99887665554444501455556665555554.345666777777888899*****999********98874478999*********************999*****99999865.577899999999999877777654 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.95        62     290     310 ..       2      22 ..       1      35 [. 0.83
   2 !    9.5   0.0   0.00098     0.064      94     185 ..      48     138 ..      38     181 .. 0.66
   3 !   12.9   0.1   9.2e-05     0.006     278     339 ..     647     706 ..     635     719 .. 0.77
   4 !   17.1   0.0   4.8e-06   0.00031     141     479 ..     762     838 ..     728     845 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.95
    TIGR02633 290 GvaGlvGaGrtelvqalfGay 310
                  G+ G vG+G+t ++ a++G  
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDV 22 
                  999*************99975 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00098
    TIGR02633  94 svleniflGneitlkGglmdydamvlrakellrelk..ldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiir 185
                  +vl+ni++G+ +  +   + +       +e l+ l+  l+++   r    l +Gq q v ia++l     l+++d+p a++  k  + +++ ++
  MMETSP1174-20130828|11155_1  48 TVLDNILMGRHLDEPR--LTQVLTASHLEEDLKSLNegLSTEVGER-GVTLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLK 138
                  6888888888887776..3333333333444444431123333333.33566788888888888888888888888888776555444444444 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 9.2e-05
    TIGR02633 278 dvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagia 339
                   vsf++++G+ +Gv G  G+G++ l+  lf   +   +g+v+++ ++v+  + +q +r+  a
  MMETSP1174-20130828|11155_1 647 GVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEA-SAGRVMINARDVAGVD-LQRLRSSCA 706
                  68999999999999999999999999999988775.5789999999887543.344555555 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 4.8e-06
    TIGR02633 141 dlGlGqqqlveiakalnkq..vrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeG 479
                  +l  G+ ql+ +a+al ++  v++l++dep+a +  +  e +  +ir  +  + + + i+h+l  +                                                                                                                                                                                                                                                                      +  sd +lv+++G
  MMETSP1174-20130828|11155_1 762 NLSIGELQLLSLARALLRKawVKILVMDEPTANMDMATDERIQAVIRR-EFTDCTVITIAHRLSTI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VD-SDVILVMDRG 838
                  445566666666666554422455666666666655555555555553.33444555566666544......................................................................................................................................................................................................................................................................33.4444444444 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.013      0.85     821     859 ..      87     122 ..      70     145 .. 0.71
   2 ?    5.5   0.0     0.013      0.84     620     661 ..     642     682 ..     611     717 .. 0.78
   3 !   22.8   0.1   7.7e-08     5e-06     811     903 ..     741     835 ..     735     845 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.013
    TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePt 859
                  ++G+   tLsGG  qrv +a+ L      + l ++D+P 
  MMETSP1174-20130828|11155_1  87 EVGERGVTLSGGQMQRVSIARSLYGM---HGLVLMDDPL 122
                  67888889999999999999888643...3455566665 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.013
    TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiLvkaleer 661
                  +  l+ ++  i  g+ + + G  gsGks+L+  +L++++e  
  MMETSP1174-20130828|11155_1 642 KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLV-LLFRIVEAS 682
                  567999999********************986.556666554 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 7.7e-08
    TIGR00630 811 llvdvGLgYi....klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903
                  +l +vGL+      ++G +   Ls Ge q + La+ L +++  k + ++DePt+ + ++  +++  v++r   +  tv+ i h l  i  +D i+ +
  MMETSP1174-20130828|11155_1 741 TLSKVGLDPNvlteEIGGSGSNLSIGELQLLSLARALLRKAWVK-ILVMDEPTANMDMATDERIQAVIRREFTD-CTVITIAHRLSTIVDSDVILVM 835
                  66777776321122689999******************999887.569***********999999999997765.69***************99754 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.68        44      31      60 ..       3      30 ..       1      37 [. 0.80
   2 !    7.9   0.0    0.0061       0.4     133     229 ..      85     184 ..      51     193 .. 0.78
   3 !   22.8   0.3   1.7e-07   1.1e-05      12     228 ..     641     845 ..     633     852 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.68
    TIGR01978 31 imGpnGsGkstLskvlaghekyevtsGeik 60
                 i+G+ G Gk t+ +++ g+ ++   +G+++
  MMETSP1174-20130828|11155_1  3 IVGAVGCGKTTILMAMLGDVDCI--AGTLQ 30
                 89***************987764..45555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0061
    TIGR01978 133 deelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.....ekalliithyerllelikPdvvhvlldGrivksGdv 229
                  ++e+ eR +    sGG  +r  i + +     l+++D+  + +Dv   + +++ +++l  +     ++ + ii   ++l  l + d ++ +  G+++++G  
  MMETSP1174-20130828|11155_1  85 STEVGERGV--TLSGGQMQRVSIARSLYGMHGLVLMDDPLAAVDVKVGRGIFQSLKRLTVKnddrqHRRCGIIMSLNQLSLLPEFDRIYFIEGGKVAETGTY 184
                  445555555..58************999999***********************9998644334446778889999999999999**************976 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 1.7e-07
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRsln...eGfsGGekkrneilqlalleP..klaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                   k+ L+g++ ++++G+ + ++G+ GsGks L   l     +e ++G+++++ +d++ ++ + r r    +  q+p+ ++G      +r  l+   ++ +ee    + f   l+e+l+++ ld ++l+ ++    +  s Ge +   + + +l +   k+ ++De  + +D+ +   + +++ +   e + + +it  +rl   +  dv+ v+ +G++ + G+
  MMETSP1174-20130828|11155_1 641 LKPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFR--IVEASAGRVMINARDVAGVDLQ-RLRSSCAVIPQSPVTLTGS-----VRRNLDPFYRYTDEEG---TTF---LRETLSKVGLDPNVLTEEIGgsgSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMATDERIQAVIRR---EFTDCTVITIAHRLSTIVDSDVILVMDRGELGEYGS 845
                  5789***************************999875..68999*************9986.7888899999***999984.....5555666665555553...455...999999999999999998842113356677766666655544433378899********9988888877754...556677888888999**************9887775 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.019       1.3     372     403 ..       3      34 ..       2     136 .. 0.90
   2 !   11.9   3.0   0.00019     0.013      47     503 ..     334     798 ..     319     821 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.019
    TIGR01194 372 ivGenGcGkstliklllGlyipqeGellldGe 403
                  ivG  GcGk+t++  +lG      G l +dG+
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVDCIAGTLQVDGN 34 
                  8*****************99999999999986 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00019
    TIGR01194  47 eetflrqvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkf.tykvrdeedelnkyttalvsGlkelklnrirrl..s.farsa.isesavrvadlniieilifilaktv.GslllsllvGllltlaayfavidakaisasvlvllyikGplvqlvsil.pilararvaftrlaelserisepepelelsea...envllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfad.yylfddlvqp.de....kkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleer..pvllldewaadqdpa 503
                  +e+++r+ ++  + ++ + ll  +  ++  +y + r    +  ++  ++++apl   er  + r+++ ++ d+  ++  ++++   l +l+ +l   + +  +  ++   tvv iv+ +  y  +     +    + r  +d+l    t +   ++  ++     l  +  +r     ++ +r   +  + i++  l+ ++  sl+ s+ v  ll  +  +     +a ++  l+  ++   + +lv ++  +   a   ++r++e+   +   e +     a   e+    d+    + + + d  + y+   +    al  + + i++G+ v +vG  G Gks+l+ ll  +     G+++++   v+    +  r   + +      l   +    d      ++  +   ++ ls+++l+  v  e+ + s  ++ls G+ + l+l  a l +    +l++de +a+ d a
  MMETSP1174-20130828|11155_1 334 DENMQRNYVYISAAMAYILLL--VCVSVLNTYGGIRAGRMIHDQVLSRLIAAPLSFWERTPSGRIISRFSGDLGMVDTQVIVY---LDDLTHFLWNASAIILVVCILVPPTVVPIVIAIPFYATILIAVDRTnREAKRVTNDALSPILTLVSESVQGRHIVDTLDLyeWvTSRNMgYIDAFNRSSFFSHTLINFNQLSCSFiSSLISSVAVIALLSNKNTYKD-GQAAYAGLALTYSFVIPYFLMLVGLItTMFFTAFTGLQRISEYNTDFVPREKNFGSVTArfdEKKHAQDPWPIAGDITFEDASLVYRT--GL-KPALRGVSFAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEASAGRVMINARDVAGVDLQRLRSSCAVIPQSpVTLTGSVRRNlDPfyryTDEEGTTFLRETLSKVGLDPNVLTEEIGGS-GSNLSIGELQLLSLARALLRKAwvKILVMDEPTANMDMA 798
                  566666654444444444443..334566677777777777777777777777777777777777777777777665554443...34555566655555555555555566666666655543333332220233455566666666666555555555444332112022222112334444444445555555554441344444444444444555544.4456677777777777777777764415667777788888888888765554443322201122334444445566666666666653..23.34788899********************************************99988889988888765414454433222122001123333444455578999*********9999.999**************9998623578999999998865 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00014     0.009     894     986 ..      87     182 ..       3     211 .. 0.84
   2 ?    2.9   0.2     0.051       3.3     895     979 ..     756     838 ..     645     846 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
    TIGR00956 894 vvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkla...daGqailCtiHq..PsailleeFDrLLllqkGGktvYfG 986
                   vG+ G  L+  q +r++i+  L      l+ +D+P + +D +    i + l++l+   d  q   C i        ll eFDr+ +++ GGk++  G
  MMETSP1174-20130828|11155_1  87 EVGERGVTLSGGQMQRVSIARSLYGMH-GLVLMDDPLAAVDVKVGRGIFQSLKRLTvknDDRQHRRCGIIMslNQLSLLPEFDRIYFIE-GGKVAETG 182
                  4999*******************9987.8999*********************99644466677777765411346699******9996.77887666 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.051
    TIGR00956 895 vGvpGeGLnveqRkrltigveLvAkP.klllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkG 979
                  +G +G+ L++   + l+++  L  k    +l +DePt+ +D  t   i  ++r+      +++   H  s i+  + D +L++ +G
  MMETSP1174-20130828|11155_1 756 IGGSGSNLSIGELQLLSLARALLRKAwVKILVMDEPTANMDMATDERIQAVIRREFTDC-TVITIAHRLSTIV--DSDVILVMDRG 838
                  677888888888888888888887762358889********999999999999865443.4444456666544..34666666666 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0071      0.46       7      25 ..       2      20 ..       1      26 [. 0.89
   2 ?    7.0   0.0     0.015      0.99       5      23 ..     657     675 ..     653     684 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0071
    TIGR00231  7 vivGhvdvGKstLlnsllk 25
                 +ivG v++GK+t+l  +l+
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMAMLG 20
                 8*************88776 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.015
    TIGR00231   5 kivivGhvdvGKstLlnsl 23 
                  ++++vG+ ++GKs+Ll  l
  MMETSP1174-20130828|11155_1 657 RVGVVGRTGSGKSSLLVLL 675
                  79*************9655 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2      0.51        33     150     172 ..       2      24 ..       1      36 [. 0.81
   2 !   14.7   0.1     3e-05     0.002     142     172 ..     651     681 ..     634     690 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.51
    TIGR02546 150 GifaeaGvGkstLlsmiargaka 172
                  Gi ++ G+Gk+t+l ++  + ++
  MMETSP1174-20130828|11155_1   2 GIVGAVGCGKTTILMAMLGDVDC 24 
                  9999********98877666555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3e-05
    TIGR02546 142 tvgeGqRiGifaeaGvGkstLlsmiargaka 172
                   + +GqR+G+ + +G+Gks+Ll  + r  +a
  MMETSP1174-20130828|11155_1 651 AIEHGQRVGVVGRTGSGKSSLLVLLFRIVEA 681
                  6789*****************9988776554 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1    0.0002     0.013     132     163 ..     650     681 ..     631     689 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0002
    TIGR03497 132 ltvGkGqrvGifagsGvGkstllgmiarnaka 163
                  +++ +GqrvG+   +G Gks+ll ++ r  +a
  MMETSP1174-20130828|11155_1 650 FAIEHGQRVGVVGRTGSGKSSLLVLLFRIVEA 681
                  68999********************9998777 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2     0.002      0.13     183     203 ..       3      23 ..       2      32 .. 0.92
   2 ?    5.2   0.1     0.033       2.2     181     210 ..     658     687 ..     634     699 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.002
    TIGR03819 183 vsGgtGsGkttLLsalLalva 203
                  ++G+ G Gktt+L a+L+ v+
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAMLGDVD 23 
                  89****************986 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.033
    TIGR03819 181 llvsGgtGsGkttLLsalLalvaedeRivl 210
                  + v+G tGsGk +LL  l   v+ +   v+
  MMETSP1174-20130828|11155_1 658 VGVVGRTGSGKSSLLVLLFRIVEASAGRVM 687
                  5699************99999886543333 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0         1        66     149     165 ..       3      19 ..       3      24 .. 0.87
   2 ?    4.3   0.0     0.056       3.7     139     168 ..     650     679 ..     640     703 .. 0.80
   3 ?    1.9   0.0      0.31        20      39      95 ..     770     828 ..     749     852 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 1
    TIGR02788 149 isGgtgsgKTTflkalv 165
                  i+G+ g gKTT+l a++
  MMETSP1174-20130828|11155_1   3 IVGAVGCGKTTILMAML 19 
                  79**********99887 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.056
    TIGR02788 139 laiaakkniiisGgtgsgKTTflkalvkli 168
                   ai++++ + ++G tgsgK  +l  l + +
  MMETSP1174-20130828|11155_1 650 FAIEHGQRVGVVGRTGSGKSSLLVLLFRIV 679
                  699*****************9988777766 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.31
    TIGR02788  39 lkrlaravasas.kqsiseekPilsaeLpngeRvQivlpPa.tekdtvsitiRkpslkd 95 
                  l +lara+      + +  ++P   +++++ eR+Q v+    t+   ++i+ R  +++d
  MMETSP1174-20130828|11155_1 770 LLSLARALLRKAwVKILVMDEPTANMDMATDERIQAVIRREfTDCTVITIAHRLSTIVD 828
                  556677666655255566799****************9764144555677777777666 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2      0.09       5.9       3      18 ..       2      17 ..       1      23 [. 0.87
   2 ?    4.8   0.1     0.073       4.8       2      19 ..     658     675 ..     657     683 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.09
    TIGR00152  3 gltGgigsGKstvaki 18
                 g++G +g+GK+t++ +
  MMETSP1174-20130828|11155_1  2 GIVGAVGCGKTTILMA 17
                 89**********9865 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.073
    TIGR00152   2 igltGgigsGKstvakil 19 
                  +g++G+ gsGKs+++ +l
  MMETSP1174-20130828|11155_1 658 VGVVGRTGSGKSSLLVLL 675
                  8***********998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 2.71u 0.23s 00:00:02.94 Elapsed: 00:00:02.25
# Mc/sec: 519.16
//
Query:       MMETSP1174-20130828|11158_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.7   0.0      0.026   11.7   0.0    1.1  1  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.4e-06     0.026     204     246 ..       5      47 ..       2      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.4e-06
    TIGR01762 204 deasavplemkaGqfiiftsrlmhaslpnsseskirlGyaary 246
                   ea+ v + +++G+ + f +r++h+s  n+  +k+    a r+
  MMETSP1174-20130828|11158_1   5 GEATGVAIAVEPGDALAFDARIIHGSPGNTDTQKTHRRVALRF 47 
                  58999************************99999887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|11157_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-18   62.4   0.0    1.5e-17   61.5   0.0    1.4  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      6e-12   43.1   0.0    1.2e-11   42.1   0.0    1.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.3e-09   34.6   0.0    8.3e-09   33.3   0.0    1.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
    4.4e-08   30.7   0.0    2.2e-07   28.4   0.0    2.0  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    4.3e-06   23.5   0.1    8.8e-06   22.5   0.0    1.5  2  TIGR00437 feoB: ferrous iron transport protein B
    4.4e-06   23.9   0.0    7.3e-06   23.2   0.0    1.3  1  TIGR00092 TIGR00092: GTP-binding protein YchF
    0.00018   18.5   0.0    0.00024   18.2   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00045   17.3   0.0    0.00072   16.6   0.0    1.3  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00094   16.7   0.0     0.0017   15.9   0.0    1.5  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0032   14.2   0.1      0.015   12.1   0.0    2.2  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.015   11.9   0.0      0.026   11.2   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   3.9e-20   1.5e-17     157     327 ..     264     441 ..     246     443 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 3.9e-20
    TIGR02729 157 ladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvvevee.....eksfvlaDiPgli..ega..segagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel.ekkvlaisaltkegleellkkllel 327
                  +  v lvG pn+GkS++++a+s+ +p++a+YpFtT   ++G + +e+     +++f + D Pg++  e+a  +e   L l  ++ +  + ++++ ++  + + k+ v+d  ++++eL++   ++ ++p l v+ k dl+ ++ + e+l++l ee+  +++l++s +++eg+e l +++++l
  MMETSP1174-20130828|11157_1 264 MPSVVLVGAPNVGKSSIIRAISTGTPEVANYPFTTRGVTMGHMFYEDektgaNNQFQIMDSPGVLarEDAlrNEMESLTLASMQYLPTAVLFVFDLSGMSGEAKSSVRDQFIVRRELRR---RFPKRPWLDVVAKSDLPYADGALEALEALYEETgADDLLHVSVFSGEGVEPLETAVFDL 441
                  45799************************************99666523333689*********944456223456788888888887777777777777778899***********85...6779***************999999999988887999***************9998875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   7.2e+02     325     357 ..     175     207 ..     159     218 .. 0.73
   2 !   42.1   0.0   3.2e-14   1.2e-11       1     165 [.     265     447 ..     265     465 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.9
    TIGR03594 325 vfiSAltgkgveklleaikevyeslskristsk 357
                  +++ Al+++g  +l + ++ev+e +++ +st k
  MMETSP1174-20130828|11157_1 175 LTVRALEKSGKGTLADILDEVKEVHKEVVSTGK 207
                  566777777777777777777777777777765 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 3.2e-14
    TIGR03594   1 pvvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkg......kefiliDTgGleeeedelekeireqaelaiee.advilfvvd.....areglteeDeeiak.lLrksk..kpvilvvNKvdnkkeeae....aaefyslGlgevlaiSaehgrgikdLldeileelpeeee 165
                  p v++vG pNVGKS+++  +  +    v+++p +TR  + g++ +++      ++f+++D +G+ ++ed l +e+++ + ++++    ++lfv+d     ++++ + +D+ i++  Lr++   +p + vv K+d   ++ +     a + + G +++l +S+  g+g++ L +++++ +++ ++
  MMETSP1174-20130828|11157_1 265 PSVVLVGAPNVGKSSIIRAIS-TGTPEVANYPFTTRGVTMGHMFYEDektganNQFQIMDSPGVLAREDALRNEMESLTLASMQYlPTAVLFVFDlsgmsGEAKSSVRDQFIVRrELRRRFpkRPWLDVVAKSDLPYADGAlealEALYEETGADDLLHVSVFSGEGVEPLETAVFDLFHKVQS 447
                  579*************97765.556679999999999998887665422222278****************************9735899***99333333456666788776526888755589999******996655422213345578************************99987755 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.8   1.4e+03      11      32 ..     180     201 ..     175     211 .. 0.70
   2 !   33.3   0.0   2.2e-11   8.3e-09       4     155 ..     265     431 ..     262     439 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.8
    TIGR00231  11 hvdvGKstLlnsllknkisite 32 
                    ++GK tL + l + k + +e
  MMETSP1174-20130828|11157_1 180 LEKSGKGTLADILDEVKEVHKE 201
                  5678999998888777755544 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 2.2e-11
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt....ykvnllDTaG.....qedfdairrlyvrev....erslevvdivilvldveeglekqtkeiiheakkk..gvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgkni 155
                    +v+vG ++vGKs+++  +++ +  +++ +p++tr + +  + ++ ++     +++++D +G      + ++++++l ++      +++l+v+d++ +  ++++ + +++ ++++e++    + p + vv K Dl      ++    l ++++a ++  +s+  g+++
  MMETSP1174-20130828|11157_1 265 PSVVLVGAPNVGKSSIIRAISTGT-PEVANYPFTTRGVTMGHMFYEDEKtganNQFQIMDSPGvlareDALRNEMESLTLASMqylpTAVLFVFDLSGMSGEAKSSV-RDQFIVRRELRRRfpKRPWLDVVAKSDLPYadGALEALEALYEETGADDLLHVSVFSGEGV 431
                  679*********************.9**********999987666655558889**********8865445667777775554223358899999999878888888.8999999888732225566677777777766656666666666666666666666666655 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.8e-10   2.2e-07     118     193 ..     264     349 ..     207     363 .. 0.75
   2 ?   -0.5   0.0      0.37   1.4e+02      42     105 ..     380     445 ..     376     456 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 5.8e-10
    TIGR03596 118 airalvvGiPNvGKStliNrlakkkvakvgnkpgvTksq.........qwiklskeleLlDtPGilwpk..ledeevglkLaltgai 193
                     ++ vG PNvGKS++i  ++     +v+n p  T++          +    +++++++D+PG+l  +  l++e  +l La ++ +
  MMETSP1174-20130828|11157_1 264 MPSVVLVGAPNVGKSSIIRAIS-TGTPEVANYPFTTRGVtmghmfyedEKTGANNQFQIMDSPGVLAREdaLRNEMESLTLASMQYL 349
                  456899************8765.56679****97777651111111114456789***********974337888888888877665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.37
    TIGR03596  42 leelvknkprlivlnkaDla.dpektkkwlkyfeekgk.kalavnakkkkkvkkilkaikkllkek 105
                  l++ + ++p l v+ k+Dl   + + +++++ +ee+g  + l v+  ++++v+ + +a+ +l+++ 
  MMETSP1174-20130828|11157_1 380 LRRRFPKRPWLDVVAKSDLPyADGALEALEALYEETGAdDLLHVSVFSGEGVEPLETAVFDLFHKV 445
                  6667789999********951445788899999977652677888888888888888887777665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   5.8e+02     141     187 ..     183     224 ..     165     250 .. 0.42
   2 !   22.5   0.0   2.4e-08   8.8e-06       1      53 [.     271     329 ..     271     347 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.5
    TIGR00437 141 rgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkq 187
                   g   l + +de      +e +k+++   k a s ++ +ek+   +q
  MMETSP1174-20130828|11157_1 183 SGKGTLADILDE-----VKEVHKEVVSTGKAAASGVNKAEKAYLAEQ 224
                  444444444442.....222222222222222222222222222222 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.4e-08
    TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkg......edieivDlPGiYs 53 
                  G pNvGKs+++ a++    +v+N+p +T     g++ +++      ++++i+D PG+ +
  MMETSP1174-20130828|11157_1 271 GAPNVGKSSIIRAISTGTPEVANYPFTTRGVTMGHMFYEDektganNQFQIMDSPGVLA 329
                  89***********************555555555555443111122799*******976 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     2e-08   7.3e-06       6      50 ..     268     311 ..     264     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2e-08
    TIGR00092   6 GivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpde 50 
                   +vG pnvGks + +ai   +  e+anyPf+t    +g +   de
  MMETSP1174-20130828|11157_1 268 VLVGAPNVGKSSIIRAISTGTP-EVANYPFTTRGVTMGHMFYEDE 311
                  58***************98887.*********8877777666555 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.3e-07   0.00024     210     299 ..     265     360 ..     169     451 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.3e-07
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedlele....G..ilvkllDtAGiReaadkvEklGiekslkaike.adlvlyvlDas 299
                    +++vG +NvGKSS++ a+++     V++++ ttR v  +++  e    G   +++++D  G+   +d++       +l +++     vl+v+D+s
  MMETSP1174-20130828|11157_1 265 PSVVLVGAPNVGKSSIIRAISTG-TPEVANYPFTTRGVTMGHMFYEdektGanNQFQIMDSPGVLAREDALRNEMESLTLASMQYlPTAVLFVFDLS 360
                  3689***************9865.5679********9988777554222232246889999998777666544333333333332123355666655 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-06   0.00072     155     222 ..     264     334 ..     214     348 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.9e-06
    TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfp..gTTld.....lieipldkesvllDtpGiineeqia 222
                     v++vG+ NVGKSs+i ++ + + +  +     +f+  g T+        +   +++ +++D+pG++ +e ++
  MMETSP1174-20130828|11157_1 264 MPSVVLVGAPNVGKSSIIRAISTGTPEVAN----YPFTtrGVTMGhmfyeDEKTGANNQFQIMDSPGVLAREDAL 334
                  457899************999854444443....222211334433221123344477889******99887664 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06    0.0017      15      73 ..     261     326 ..     247     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
    TIGR03598  15 edklpeiafaGrSNvGKSsliNaLtnrkklartSktP....GrTqlinffev.....neelrlvDlPG 73 
                  + k+p ++++G  NvGKSs+i a+       ++++ P    G T    f+e      n+++ ++D PG
  MMETSP1174-20130828|11157_1 261 DLKMPSVVLVGAPNVGKSSIIRAISTGT--PEVANYPfttrGVTMGHMFYEDektgaNNQFQIMDSPG 326
                  567899*****************96543..44555550001555555566655555566788888887 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       0.3   1.1e+02     267     326 ..     171     233 ..     167     257 .. 0.68
   2 !   12.1   0.0     4e-05     0.015     187     237 ..     262     312 ..     244     438 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.3
    TIGR03156 267 aeadlllhvvDasdeeae.eqieaveevLeelgaeeipvllvlNkidkle..eeeleeleekk 326
                    adl ++ +  s + +  + +++v+ev +e+  + +     +Nk++k+   e++lee ++++
  MMETSP1174-20130828|11157_1 171 VVADLTVRALEKSGKGTLaDILDEVKEVHKEVVSTGKAAASGVNKAEKAYlaEQALEEGTAST 233
                  567777777777766554045688999999999999999999999998874455555554444 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4e-05
    TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee 237
                   ++p+v lvG  N GKs++++a+ + +  +++  F+T   t+ ++ +++e+
  MMETSP1174-20130828|11157_1 262 LKMPSVVLVGAPNVGKSSIIRAISTGTPEVANYPFTTRGVTMGHMFYEDEK 312
                  579**********************************99999888887765 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05     0.026       8     170 ..     265     445 ..     260     460 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7e-05
    TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekam..EllplGp...vvliDTaGl.dDegeLGelRvektrevlektdlall.vvdaeaeleeleee.....lle.elkek..kipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpee 170
                    ++l+G  N+GKSs+i a+       v+++p tT    + +m  E  + G+     ++D +G+   e +L +   + t + ++    a+l v+d +    e++++     +++ el+++  k p++ v++k+dl  ++ +    ++ +e++ +++++ vs+ ++eg+e l++a+++l ++ 
  MMETSP1174-20130828|11157_1 265 PSVVLVGAPNVGKSSIIRAISTGT-PEVANYPFTTRGVTMGHMfyEDEKTGAnnqFQIMDSPGVlAREDALRNEMESLTLASMQYLPTAVLfVFDLSGMSGEAKSSvrdqfIVRrELRRRfpKRPWLDVVAKSDLPYADGAlealEALYEETGADDLLHVSVFSGEGVEPLETAVFDLFHKV 445
                  5789***************98655.5577888888877776664466677753336799999962457788888888888888877666542555443333333330000033313333344568999999999987766544434445566677888999999999999998888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 1503.39
//
Query:       MMETSP1174-20130828|11166_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 456.46
//
Query:       MMETSP1174-20130828|11168_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 568.13
//
Query:       MMETSP1174-20130828|11169_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|11167_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 785.11
//
Query:       MMETSP1174-20130828|11174_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 181.01
//
Query:       MMETSP1174-20130828|11173_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1227.50
//
Query:       MMETSP1174-20130828|11176_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 633.55
//
Query:       MMETSP1174-20130828|11177_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.8  15.6        1.9    4.6  10.8    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  10.8   0.00046       1.9     318     371 ..     159     224 ..     113     232 .] 0.49

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00046
    TIGR02442 318 e...........qekeekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedeke 371
                  +           + ++e++++e +e +++d + ed+++++++e++ +++ e+e+++dd+++ de +
  MMETSP1174-20130828|11177_1 159 DdmmtmmmvdddEDDDEDDEDEDDEDDGDDDDDEDDGDDEDDEDDDEDDeEDEDDEDDADDADEDK 224
                  344444433222344444444444444455444444422222222221112222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 556.75
//
Query:       MMETSP1174-20130828|11180_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|11178_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1174-20130828|11182_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|11189_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|11187_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1213.04
//
Query:       MMETSP1174-20130828|11185_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      204  (0.0497318); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.65
# Mc/sec: 635.58
//
Query:       MMETSP1174-20130828|11190_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 233.81
//
Query:       MMETSP1174-20130828|11191_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-05   22.4   0.0    2.1e-05   22.1   0.0    1.1  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
    3.1e-05   21.2   0.0    3.6e-05   21.0   0.0    1.1  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
     0.0002   19.3   0.0    0.00027   18.9   0.0    1.2  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    0.00055   17.4   0.0    0.00069   17.1   0.0    1.1  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
     0.0008   17.5   0.0     0.0011   17.0   0.0    1.1  1  TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
     0.0055   14.4   0.0     0.0066   14.1   0.0    1.1  1  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
  ------ inclusion threshold ------
      0.017   13.0   0.0      0.023   12.6   0.0    1.2  1  TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
      0.025   12.4   0.0      0.036   11.9   0.0    1.2  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB


Domain annotation for each model (and alignments):
>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.1e-08   2.1e-05     201     224 ..       7      30 ..       3      35 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.1e-08
    TIGR00099 201 gislenviaiGDseNDieMleaag 224
                  +++l++v+++GD+ ND++M+ea++
  MMETSP1174-20130828|11191_1   7 QYTLDEVAVFGDAGNDLPMFEAVD 30 
                  789******************987 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.1e-08   3.6e-05     198     236 ..      13      51 ..       3      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.1e-08
    TIGR01486 198 vvglGDspnDlpllevvdlavvvkgkdgeskslkeleeg 236
                  v   GD  nDlp++e+vd    v+g +g+  +++   +g
  MMETSP1174-20130828|11191_1  13 VAVFGDAGNDLPMFEAVDATAPVPGYEGQRARVRVAMPG 51 
                  5567**************************999985444 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.3e-07   0.00027     195     218 ..       9      32 ..       4      35 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.3e-07
    TIGR01484 195 kkeeilafGDsgNDeemlevagla 218
                  + +e+ +fGD+gND++m+e+++ +
  MMETSP1174-20130828|11191_1   9 TLDEVAVFGDAGNDLPMFEAVDAT 32 
                  6799****************9875 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.3e-06   0.00069     158     186 ..       5      31 ..       2      36 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.3e-06
    TIGR01482 158 keklgikpeeilviGDSeNDidlFevavf 186
                  +e++ +   e++v GD +ND+++Fe ++ 
  MMETSP1174-20130828|11191_1   5 CEQYTLD--EVAVFGDAGNDLPMFEAVDA 31 
                  6666666..9**************98865 PP

>> TIGR01490  HAD-SF-IB-hyp1: HAD hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06    0.0011     167     195 ..       6      34 ..       3      38 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.2e-06
    TIGR01490 167 ekidlkesyaYsDsisDlpllslvghpvv 195
                  e+++l e+++++D  +Dlp++++v+    
  MMETSP1174-20130828|11191_1   6 EQYTLDEVAVFGDAGNDLPMFEAVDATAP 34 
                  7999********************98765 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.3e-05    0.0066     157     184 ..       6      31 ..       2      37 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
    TIGR01487 157 ellGlkkeevaaiGDsenDldlFrvagf 184
                  e++ l+  eva+ GD+ nDl++F+ ++ 
  MMETSP1174-20130828|11191_1   6 EQYTLD--EVAVFGDAGNDLPMFEAVDA 31 
                  555554..6***************9986 PP

>> TIGR02461  osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05     0.023     204     223 ..      13      32 ..       3      36 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.5e-05
    TIGR02461 204 tvglGDsenDlplleavdla 223
                  +   GD+ nDlp++eavd +
  MMETSP1174-20130828|11191_1  13 VAVFGDAGNDLPMFEAVDAT 32 
                  4557*************976 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05     0.036     152     177 .]       4      29 ..       2      29 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-05
    TIGR01488 152 eeskedrkeiiavGDsvnDlpllklv 177
                  ++++++++e++ +GD  nDlp++++v
  MMETSP1174-20130828|11191_1   4 TCEQYTLDEVAVFGDAGNDLPMFEAV 29 
                  57888999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1174-20130828|11193_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 139.99
//
Query:       MMETSP1174-20130828|11192_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 570.66
//
Query:       MMETSP1174-20130828|11195_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1174-20130828|11197_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|11202_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 610.92
//
Query:       MMETSP1174-20130828|11203_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   14.6   0.1      0.077   11.4   0.0    2.1  2  TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family


Domain annotation for each model (and alignments):
>> TIGR01725  phge_HK97_gp10: phage protein, HK97 gp10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.9e-05     0.077      76     106 ..      40      70 ..      22      77 .. 0.85
   2 ?    0.9   0.1     0.034   1.4e+02      87     117 ..     166     196 ..     124     205 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
    TIGR01725  76 nawyarflEfGTskqkaqpFlrkalkqnkek 106
                  n+ ++ +++ GTsk +a++Flr++    k++
  MMETSP1174-20130828|11203_1  40 NTVFWMLVNDGTSKGEAEKFLRTTDSADKNE 70 
                  7889*******************98887775 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.034
    TIGR01725  87 TskqkaqpFlrkalkqnkekvieifikelea 117
                  T+++ a+ F ++ +++ +ek  +  ike ++
  MMETSP1174-20130828|11203_1 166 TMHTTAHSFSSSRMEKGEEKTPHRKIKEKKK 196
                  5555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1174-20130828|11206_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|11207_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   12.3   1.8       0.77    8.1   0.1    3.0  3  TIGR01841 phasin: phasin family protein


Domain annotation for each model (and alignments):
>> TIGR01841  phasin: phasin family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00019      0.77      49      86 ..     165     202 ..     153     204 .. 0.85
   2 ?   -2.8   0.0      0.48     2e+03      11      11 ..     314     314 ..     296     330 .. 0.52
   3 ?    2.4   0.0     0.012        48      49      68 ..     378     396 ..     348     403 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00019
    TIGR01841  49 paaeklleysrelyEiaaktqaealkllrrriaegsre 86 
                  ++ ++l+    ++ E +++t++ + k++r+ +a+++++
  MMETSP1174-20130828|11207_1 165 AVGARLVDIVPQTLECLSSTNKQVVKAARQAMAQACKI 202
                  45889999999***********************9986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.48
    TIGR01841  11 l 11 
                  +
  MMETSP1174-20130828|11207_1 314 K 314
                  2 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.012
    TIGR01841  49 paaeklleysrelyEiaakt 68 
                  +  +kll++sr l+E+a++ 
  MMETSP1174-20130828|11207_1 378 E-EQKLLAESRGLAELARRC 396
                  4.589***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 1381.06
//
Query:       MMETSP1174-20130828|11212_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 496.28
//
Query:       MMETSP1174-20130828|11214_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|11216_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 510.36
//
Query:       MMETSP1174-20130828|11218_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|11221_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|11227_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|11228_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-10   36.5   1.6      5e-10   36.4   1.1    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
  ------ inclusion threshold ------
      0.011   12.5   0.1      0.011   12.5   0.1    1.0  1  TIGR00890 2A0111: oxalate/formate antiporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   1.1   2.4e-13     5e-10     387     452 ..       9      75 ..       4      76 .] 0.94

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 2.4e-13
    TIGR00879 387 maiclfvlgilgvssvtgsskaa.sivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaia 452
                  m +c + l+i++ ++  ++ ++   ++a+ +i+ + + +al+igp++ ++++E fp++vRp ++a++
  MMETSP1174-20130828|11228_1   9 MGLCHVSLAIAFGMMKSEAANWFpRGLALLGICGYGVSFALSIGPIPNIITAEGFPTRVRPTAMAVS 75 
                  778999999999999999999999****************************************985 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.4e-06     0.011      97     145 ..       8      54 ..       2      75 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.4e-06
    TIGR00890  97 tyglasvgegivYgialstavkWfpdkrGLasgiiiggyGlG.slilspl 145
                   +gl  v+ +i++g++ s a  Wfp  rGLa  + i gyG+  +l + p+
  MMETSP1174-20130828|11228_1   8 VMGLCHVSLAIAFGMMKSEAANWFP--RGLAL-LGICGYGVSfALSIGPI 54 
                  589**********************..67774.66899998523334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1174-20130828|11233_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|11235_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 186.98
//
Query:       MMETSP1174-20130828|11237_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.6   0.3       0.19    9.8   0.1    2.1  2  TIGR02514 type_III_yscP: type III secretion system needle length determinant


Domain annotation for each model (and alignments):
>> TIGR02514  type_III_yscP: type III secretion system needle length determinant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.034   1.4e+02      80      98 ..      38      56 ..      26      60 .. 0.81
   2 ?    9.8   0.1   4.6e-05      0.19      56      96 ..      93     133 ..      67     139 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.034
    TIGR02514 80 llqqarqeLleRLqrlepe 98
                 + + a+ e+l+RL  ++ +
  MMETSP1174-20130828|11237_1 38 VYEDAKREMLQRLAEVHYG 56
                 5678999*****9887765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 4.6e-05
    TIGR02514  56 leiriaresgklsveilaepassqllqqarqeLleRLqrle 96 
                  ++i ++   g  sve  a+++++  l+ a+ e+l+RL  ++
  MMETSP1174-20130828|11237_1  93 VNIAVKAGPGLSSVEEDAKRNLLHRLEDAKREMLQRLAEVN 133
                  56888889999999999999999999999999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 503.40
//
Query:       MMETSP1174-20130828|11239_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 174.96
//
Query:       MMETSP1174-20130828|11236_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1170.13
//
Query:       MMETSP1174-20130828|11244_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 761.14
//
Query:       MMETSP1174-20130828|11241_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.3    8.8   8.3       0.17    9.6   4.2    1.6  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.2     4e-05      0.17      24     103 ..     251     327 ..     243     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4e-05
    TIGR01144  24 letRqekIaddlasaekakkelalaqkkaqellkeakeeaaeiienAnkrkseikeeikkeAeeerekilakaeaeieae 103
                  +++R ++++d +++   a+k+   a      l+ e k  +a++ie+ ++r+ ++ e +k++ ee r++ ++ka++e ++e
  MMETSP1174-20130828|11241_1 251 VDQRWKNVEDMMDETRPANKNNIRAVPLSGALVTEGK--SAHVIEKMKQRRTQVDEAAKDAVEEYRKR-VDKAKQEEQVE 327
                  699******************************9987..689*****999998877666655555555.56666653333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.60
# Mc/sec: 943.72
//
Query:       MMETSP1174-20130828|11247_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 1032.11
//
Query:       MMETSP1174-20130828|11246_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1864.88
//
Query:       MMETSP1174-20130828|11251_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.53
# Mc/sec: 729.68
//
Query:       MMETSP1174-20130828|11253_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   18.4   1.3    0.00026   18.2   0.9    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.9   6.3e-08   0.00026     116     207 ..      29     120 ..       2     174 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.3e-08
    TIGR00599 116 essskkkliee.eeakgvdeeseddlrsasssraaakkktadilql.ssdtskrndkdyrsekpdedlvqCPiCsqlvkekaverhldseClgs 207
                    +s +++i+   e+++ +++ +  l+s +   ++  k++   + + ++ + +++ +   se     +v CP C++ v  + v+ h d+ Cl  
  MMETSP1174-20130828|11253_1  29 HRPSARRKISGfGEQESGNNALDVLLQSDQR-NTTPLKSQKRRRSVeNNGNYPSSSESSSSESSSSRFVVCPCCQTSVISHFVNDHVDQ-CLKG 120
                  4556677776513333334444444444222.222222222223330334467888888889999***********************9.9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 843.93
//
Query:       MMETSP1174-20130828|11254_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 515.96
//
Query:       MMETSP1174-20130828|11257_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:01.49
# Mc/sec: 190.45
//
Query:       MMETSP1174-20130828|11259_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.71
# Mc/sec: 764.05
//
Query:       MMETSP1174-20130828|11260_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 901.17
//
Query:       MMETSP1174-20130828|11256_1  [L=1139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-168  559.6   0.0   4.1e-168  559.2   0.0    1.1  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
   1.1e-108  362.5   0.0   4.5e-108  360.5   0.0    1.8  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.1e-08   31.8   0.0    1.8e-08   31.1   0.0    1.3  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    1.7e-07   28.0   0.1    3.2e-07   27.1   0.1    1.3  1  TIGR00717 rpsA: ribosomal protein S1
    0.00024   18.1   0.1    0.00042   17.2   0.1    1.3  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0017   15.5   0.1      0.017   12.2   0.1    2.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
     0.0026   15.1   0.6      0.039   11.3   0.1    2.3  2  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
     0.0067   13.1   0.5      0.014   12.1   0.4    1.4  1  TIGR00959 ffh: signal recognition particle protein
  ------ inclusion threshold ------
      0.026   10.6   0.1      0.043    9.9   0.0    1.2  1  TIGR02063 RNase_R: ribonuclease R
      0.029   10.8   0.2      0.046   10.1   0.1    1.2  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.2   0.0    1e-170  4.1e-168      51     688 ..     470    1103 ..     441    1121 .. 0.92

  Alignments for each domain:
  == domain 1    score: 559.2 bits;  conditional E-value: 1e-170
    TIGR01967   51 earekavPeiry.pdnlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGsrGlightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaavdelveeek.GdiliflpGereirdaaealrkrklr......hveilPlyarlsaeeqqrvfqph..sgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrPe.ftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneepadydaihkallsGllsqiGakdekkeysG.arnrkflifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlik 688 
                   +  +++v +++    +lP+++ ++++ +ai enq++++ GetGsGkttq+ +   e+G  s+G+ig tqPrr+aa sva+rvaee+g +lG+ vGy +rfed  s+et++k +tdG+l+ e  qd  l+ry ++i+deaher++  d l+G+lk+l+k+ P lk+i+tsat+d e+fs +f + Pi  + Gr +Pve+ y      +++  + d l+a + +v ++   e+ Gdil+fl+G+ ei  + e+l  r  +      +  ilP+y+ l +e q+r+f+p     r+ v+atn+ae+slt+ gi yvid+G  +   y  +  +  l + pisqas  qr Gr Gr ++G c rly e+ f+        Pei rtnl  v+lq++a+++ d+  f f+++P  +++   ++ l  l+al+++     lt +Gr++a++P++P+l++ml+ +  l c +e+l i++ ls+ +p  rP++k+++ad + a+f ++e d l+l+ +W+  +     + +n    ++ ++yl+   +r  qd+ +ql+ +    ++ + ++  +y+++ +++ +G +++   kd ++ y+  + ++  +i+P+s l++k+P+w++  elv t+k y r v  ieP+W+ e+a+++ +
  MMETSP1174-20130828|11256_1  470 AYGQQSVKTLKEqRADLPIAKLKKELCQAIVENQLLVVIGETGSGKTTQMTQYMAEMGFTSKGMIGCTQPRRVAAMSVAKRVAEEFGCQLGQEVGYTIRFEDMTSPETVIKYMTDGMLMREYLQDNDLTRYSALILDEAHERTIHTDVLFGLLKQLTKKNPHLKLIVTSATLDAEKFSGYFFDCPIFTIPGRIHPVEIMYT-----KDP--ESDYLDATIITVMQIHLSEPaGDILVFLTGQEEIDTCCEILFTRMKAlgelapDLIILPVYGALPSEMQSRIFEPApvGARKCVVATNIAEASLTINGIYYVIDPGFCKQKAYNPKMGMDSLVVTPISQASCRQRAGRAGRTGPGKCYRLYTEQAFRTEMLpSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTMVGAMESLFSLGALDDEG---LLTRLGRKMAEFPLEPQLSKMLIVSVDLACTEEILTIVAMLSVENPFYRPKDKQAQADMKKAKFFQPEGDHLTLLAVWEGWKIA---KFSN---PWCYENYLQARAMRRAQDVRKQLTSILDRYKMDIVSAGRNYKKVQRSITAGYFTNAAKKDPQEGYRTmVEGNPVYIHPSSALFNKNPEWLIYHELVMTTKEYMRAVMAIEPKWLVELAPQFFR 1103
                   4455666666541468****************************************************************************************************************************************************************************************5.....455..567888888888777665555*******************987765511222255699***************9763268****************************************************************************987551467***************************************************999...9*****************************************************************************987643...3334...59***********************************************************9999862678899********************************************99876 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.5   0.0  1.1e-110  4.5e-108       1     599 [.     486    1118 ..     486    1124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 360.5 bits;  conditional E-value: 1.1e-110
    TIGR01970    1 lPieavlPklrdalaakpqvvLeappGaGkstalPLalLdapwligrkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda.....sevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqae.rlaaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeerdl.erkggadlaarlealqqerkgrkgad............................lqrakqllkklrralklskvdsaaieaea..lGlllalaypdriakrrgkdtgeyqLanGrgalleaedaLake..ewLvvadlkeeeakkeerillaaeldealleeelaelveredqvdwdekkgklk 599 
                   lPi+++  +l +a+  ++ +v+   +G+Gk+t++   + +++++ ++ i    Prr+aa +va+r+a+e g + G++vGy +r+e  +s++t +  +t+G+l r  ++D  L++ ++li+De her +++D+   l ++  ++    Lk+++ satLd e++s  + + p+ +  Gr +Pvei y++  e++ l+  + + ++  l e +g++LvfL Gq ei    e L  r++a     +++ ++P+yG+l+ e q+r+ +pa+ G rk v+atniae+slti+G+  viD g+ ++  ++pk G+  L ++ isqas  qraGraGr+ pG c+rL++e+  + ++   + pei +++L +++l+l + G +    + f+d PP+ +++ a e L  lgald eg lt  G+++ae ++eP+l+++l+ + + +  ++ +++ a+L  +++  r ++++ +a +++++ + +++ +                              ++ra+ + k+l+  l   k+d  ++  +   +   ++  y    ak+ ++ +g   + +G+ ++++ ++aL ++  ewL+  +l  + +  +e +   ++++++ l e  ++ + + d   + ++k+ +k
  MMETSP1174-20130828|11256_1  486 LPIAKLKKELCQAIVENQLLVVIGETGSGKTTQMTQYMAEMGFTSKGMIGCTQPRRVAAMSVAKRVAEEFGCQLGQEVGYTIRFEDMTSPETVIKYMTDGMLMREYLQDNDLTRYSALILDEAHERTIHTDVLFGLLKQLTKK-NPHLKLIVTSATLDAEKFSGYFFDCPIFTIPGRIHPVEIMYTKDPESDYLDATIITVMQIHLSEPAGDILVFLTGQEEIDTCCEILFTRMKAlgelaPDLIILPVYGALPSEMQSRIFEPAPVGARKCVVATNIAEASLTINGIYYVIDPGFCKQKAYNPKMGMDSLVVTPISQASCRQRAGRAGRTGPGKCYRLYTEQAFRtEMLPSSIPEIQRTNLGNVVLQLKAMGINdLLGFDFMDPPPVQTMVGAMESLFSLGALDDEGLLTRLGRKMAEFPLEPQLSKMLIVSVDLACTEEILTIVAMLSVENPfYRPKDKQAQADMKKAKFF-QPEGDHLtllavwegwkiakfsnpwcyenylqaraMRRAQDVRKQLTSILDRYKMDIVSAGRNYkkVQRSITAGYFTNAAKKDPQ-EGYRTMVEGNPVYIHPSSALFNKnpEWLIYHELVMT-T--KEYMRAVMAIEPKWLVELAPQFFRAADPTRMTKAKRMMK 1118
                   8***********************************************************************************************************************************99998877665.567***********************************************************************************98876443455999************************************************************************************************98876515678899********************989999********************************************************************9866531444444444444433322.2222222345566777777788899999999999989999999999887665555544443332338888888999999999997.4555689*************765337*******999.4..455555567889999999999999998877666666554 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.5e-11   1.8e-08     616     689 .]     170     251 ..     164     251 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 4.5e-11
    TIGR03591 616 vevgkvyegkvvkiadfgafvellp.........gkdglvhiSelaeervekvedvlkegdevkvkvleidkkgrvklsrkav 689
                  +e+  +yegkv+ki++fg+fve+           + +glvh+S++    v++  + ++ ++ vkvk++++   ++++l++k+v
  MMETSP1174-20130828|11256_1 170 PELYGIYEGKVTKIMNFGVFVEIDApgggsgydrKSEGLVHVSHFWAGMVTDPGKEVSRNQVVKVKIISMT-GNKMSLTMKEV 251
                  567789****************953222222222579*********************************9.79*****9985 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   7.7e-10   3.2e-07     277     348 ..     177     254 ..     163     260 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 7.7e-10
    TIGR00717 277 kgkvtnladyGvfveiee.....g....iEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslslKqvkan 348
                  +gkvt++ ++Gvfvei       g     EGlvhvs + W + +++P k v+  ++v+vk++++    +++sl++K v ++
  MMETSP1174-20130828|11256_1 177 EGKVTKIMNFGVFVEIDApgggsGydrkSEGLVHVSHF-WAGMVTDPGKEVSRNQVVKVKIISMT--GNKMSLTMKEVDQR 254
                  79**************7433222233337*******98.**********************9986..56789999998776 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1     1e-06   0.00042     114     166 ..     473     524 ..     445     531 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1e-06
    TIGR02788 114 stelsdadeellellkagdikeFlklaiaakkniiisGgtgsgKTTflkalvk 166
                  +++++  +e+  +l  a ++k+ l +ai++++ ++++G tgsgKTT +   + 
  MMETSP1174-20130828|11256_1 473 QQSVKTLKEQRADLPIA-KLKKELCQAIVENQLLVVIGETGSGKTTQMTQYMA 524
                  44455555565666555.5888899*********************9987765 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   4.1e-05     0.017     122     161 ..     488     527 ..     373     533 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-05
    TIGR02782 122 taaqadvlreavaarknilvvGGtgsGkttLanallaeia 161
                   a+ ++ l +a+  ++ ++v+G tgsGktt +   +ae+ 
  MMETSP1174-20130828|11256_1 488 IAKLKKELCQAIVENQLLVVIGETGSGKTTQMTQYMAEMG 527
                  4556678999********************9998888875 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   9.6e-05     0.039      11      38 ..     497     524 ..     488     532 .. 0.86
   2 ?    1.5   0.0     0.091        38     160     187 ..     573     600 ..     565     614 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.6e-05
    TIGR03880  11 GGliegsvivviGeaGtGkttlslqfly 38 
                    ++e++++vviGe+G Gktt   q++ 
  MMETSP1174-20130828|11256_1 497 QAIVENQLLVVIGETGSGKTTQMTQYMA 524
                  56899****************9999986 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.091
    TIGR03880 160 askyglieylaDgvillkyvrsddlrdv 187
                  +s   +i y++Dg+++ +y +++dl+ +
  MMETSP1174-20130828|11256_1 573 TSPETVIKYMTDGMLMREYLQDNDLTRY 600
                  6667899**************9999876 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4   3.3e-05     0.014      65     158 ..     467     559 ..     459     636 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.3e-05
    TIGR00959  65 kslspkqqlikivkeeLvallgee.saelklaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpv 158
                  k+l  +qq +k++ke+ ++l  ++ ++el +a  +++ ++++G  GsGKtt +++  +      + k ++  +  +R+aA+   k ++e+ g ++
  MMETSP1174-20130828|11256_1 467 KNLAYGQQSVKTLKEQRADLPIAKlKKELCQAIVENQLLVVIGETGSGKTTQMTQYMAE--MGFTSKGMIGCTQPRRVAAMSVAKRVAEEFGCQL 559
                  567789************9965555999999999999**************98775443..35678889999999999*9999999988887765 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0001     0.043     631     661 ..     175     213 ..     173     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0001
    TIGR02063 631 efegvissvtsfGlFveLe........entieGLvhiss 661
                  ++eg ++++ +fG+Fve++        + + eGLvh+s+
  MMETSP1174-20130828|11256_1 175 IYEGKVTKIMNFGVFVEIDapgggsgyDRKSEGLVHVSH 213
                  69****************944444444468899999986 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00011     0.046      15      71 ..     467     522 ..     453     548 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
    TIGR00955  15 aqdgekkllvkrleealarkk...pekellknvsGvaksGellAvlGsSGaGKtTLlnal 71 
                  ++  + +++vk+l+e+    +   p  +l k+ + ++ + +ll v+G  G+GKtT +   
  MMETSP1174-20130828|11256_1 467 KNLAYGQQSVKTLKEQ----RadlPIAKLKKELCQAIVENQLLVVIGETGSGKTTQMTQY 522
                  2222333444444444....2457999****************************99764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.20u 0.23s 00:00:01.43 Elapsed: 00:00:01.22
# Mc/sec: 1232.26
//
Query:       MMETSP1174-20130828|11263_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-53  176.8   0.2      1e-52  176.3   0.1    1.2  1  TIGR01172 cysE: serine O-acetyltransferase
    8.3e-16   55.7   0.7    1.2e-15   55.2   0.5    1.2  1  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
    5.1e-09   33.8   7.5      7e-08   30.1   5.2    2.0  1  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    1.9e-08   32.0   0.9    3.1e-08   31.4   0.6    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    3.6e-08   30.5   1.3    1.5e-05   21.9   0.2    2.2  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    3.2e-06   24.9   1.2    3.2e-06   24.9   0.9    2.2  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
    6.5e-05   19.8   0.3    9.9e-05   19.2   0.2    1.3  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0017   15.5   1.7       0.01   12.9   1.2    1.9  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
     0.0051   14.0   0.2       0.47    7.5   0.0    2.2  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
  ------ inclusion threshold ------
      0.021   12.5   0.9       0.69    7.6   0.2    2.3  2  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
      0.027   10.6   0.7       0.99    5.4   0.0    2.1  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function


Domain annotation for each model (and alignments):
>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.1   2.8e-55     1e-52       3     159 ..     130     291 ..     128     293 .. 0.93

  Alignments for each domain:
  == domain 1    score: 176.3 bits;  conditional E-value: 2.8e-55
    TIGR01172   3 edlkavlerDPaaes.alevlllykglhallayrlahalykrk...lkllarllselvrvltgvdihPaakigrgvliDhatGvviGetavigddvsiyqgvtLGgtg.kekgkRhPtvkegvvigagakvLGnievgenakiGansvvlkdvpaeatvvGv 159
                  +dl ++ ++DPa++s  +++++++kg+ha ++ r++h+l++++    +++a +l+++++ ++++d+hP+a + +g+++Dha+G+viGeta++g+ ++i++gvtLG +g k+ g RhP+++++vv+gaga+vLGni + +++ iGa +vv+k v ++ tvvG 
  MMETSP1174-20130828|11263_1 130 TDLLEIANKDPAVRSsFIQPFFFFKGFHATQIQRISHVLWEKGdfdDRCVALALQNRMSEVFSIDLHPGAVLREGLFMDHAHGIVIGETATLGRRCTILHGVTLGNKGgKTPGRRHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGT 291
                  5888999******862579*********************997333589********************************************************99725556************************************************6 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.5   3.3e-18   1.2e-15      39     139 ..     190     292 ..     162     297 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 3.3e-18
    TIGR04016  39 lfgyeiqaaatigrrftihhgyavvinknvvagddftirhgvtignrgads..lacpvigngvelganvillgditignnvtigagsvvldsipdnalvvgek 139
                  +f  +++  a +   + + h + +vi  +   g   ti hgvt+gn+g+++     p+ig++v lga   +lg+i i n+vtiga +vv  s+  ++ vvg +
  MMETSP1174-20130828|11263_1 190 VFSIDLHPGAVLREGLFMDHAHGIVIGETATLGRRCTILHGVTLGNKGGKTpgRRHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGTN 292
                  577788888888888999******************************98722568*************************************9999999964 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   5.2   1.9e-10     7e-08     120     199 ..     215     291 ..     210     293 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.9e-10
    TIGR03570 120 igdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvkdipenavvvGv 199
                  ig+  ++  ++++ H +++g+     pg     + +ig++v++GagA+v+ ++ I +++++Ga avV+k++ ++++vvG+
  MMETSP1174-20130828|11263_1 215 IGETATLGRRCTILHGVTLGNKGGKTPG---RRHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGT 291
                  3333333333333333333333333333...23568******************************************97 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.6   8.3e-11   3.1e-08     116     207 ..     198     292 ..     186     304 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 8.3e-11
    TIGR03532 116 GaeiGegtmidm..navlGgraivGknvhiGaGavla..GvieppsakpvvieddvliGanavileGvkvGkGavvaaGaiviedvpentvvaGvp 207
                  Ga++ eg  +d   ++v+G  a++G+++ i  G  l   G   p   +p +i ddv++Ga a +l  + + +   + a a+v++ v +++ v G+ 
  MMETSP1174-20130828|11263_1 198 GAVLREGLFMDHahGIVIGETATLGRRCTILHGVTLGnkGGKTPGRRHP-QIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGTN 292
                  8889999999853379*****************9996336666666666.9************************************999999874 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.001      0.38     152     177 ..     212     237 ..     193     243 .. 0.79
   2 !   21.9   0.2     4e-08   1.5e-05     256     299 ..     247     290 ..     245     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
    TIGR01853 152 nvviyeevklgknviiqagaviGsdG 177
                  ++vi e+++lg++++i  g+ +G++G
  MMETSP1174-20130828|11263_1 212 GIVIGETATLGRRCTILHGVTLGNKG 237
                  46777777888888888888888776 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4e-08
    TIGR01853 256 kiGrnvilgGqvgvagHleigdkvvigaksgvsksveenkkygg 299
                  +iG+ v+lg  ++v g + i+++v+iga+++v+ksv ++ +  g
  MMETSP1174-20130828|11263_1 247 QIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVG 290
                  79**********************************99887776 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.15        55     105     131 ..     209     235 ..     203     240 .. 0.88
   2 !   24.9   0.9   8.7e-09   3.2e-06     107     155 ..     244     292 ..     239     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.15
    TIGR03308 105 kakrvtiGhdvWiGhGavilPgvtiGn 131
                  +a+ ++iG    +G   +il gvt+Gn
  MMETSP1174-20130828|11263_1 209 HAHGIVIGETATLGRRCTILHGVTLGN 235
                  5788999*****************998 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 8.7e-09
    TIGR03308 107 krvtiGhdvWiGhGavilPgvtiGnGavvaagavvtkdvasytivaGvp 155
                  ++ +iG dv +G Ga +l ++ i n   ++a avvtk v +   v G+ 
  MMETSP1174-20130828|11263_1 244 RHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGTN 292
                  6779***********************************9987777754 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   2.6e-07   9.9e-05     367     439 ..     219     293 ..     202     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.6e-07
    TIGR01173 367 aeigkkvNiGagtitcNYDGvn..KhktvigddvfiGsdsqlvaPvkvgdgatiaaGstvtkdvpegaLalsrar 439
                  a++g+++ i  g+ + N  G+   +++  igddv++G+ ++++  + +++++ti+a ++vtk v  ++ ++++++
  MMETSP1174-20130828|11263_1 219 ATLGRRCTILHGVTLGNKGGKTpgRRHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGTNK 293
                  678999999999999999998644677899*******************************99999988887654 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.2   2.8e-05      0.01     122     187 ..     221     295 ..     200     306 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
    TIGR01852 122 vgnnvvlannatla...G......hvevgdlaiigglvavHQfvrigeyamigglsavskDvpPyvlvegnravl 187
                  +g ++++   +tl+   G      h ++gd +++g+ ++v   + i++ + ig+ + v+k v+P ++v g+++vl
  MMETSP1174-20130828|11263_1 221 LGRRCTILHGVTLGnkgGktpgrrHPQIGDDVVLGAGASVLGNIYIANEVTIGARAVVTKSVMPKCTVVGTNKVL 295
                  333333333333322211222244889*************************************99999988776 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0013      0.47     175     224 ..     187     235 ..      47     240 .. 0.68
   2 ?    4.4   0.2     0.011       4.2     204     240 ..     248     282 ..     246     294 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
    TIGR03991 175 vvkekavfieegakvkegavldasdGpivigkdakveefsflegpvyige 224
                  +++   + +++ga+++eg+ +d  +G ivig+ a++   + +   v +g+
  MMETSP1174-20130828|11263_1 187 MSEVFSIDLHPGAVLREGLFMDHAHG-IVIGETATLGRRCTILHGVTLGN 235
                  344445669*****************.779999******99988888886 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.011
    TIGR03991 204 igkdakveefsflegpvyigegarvkagarikggtsi 240
                  ig+d+ +  ++ + g++yi+++ ++ a a +++   +
  MMETSP1174-20130828|11263_1 248 IGDDVVLGAGASVLGNIYIANEVTIGARAVVTKS--V 282
                  6777777777777777777777777555544333..3 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3    0.0027      0.99     145     176 ..     248     280 ..     200     284 .. 0.69
   2 ?    7.6   0.2    0.0018      0.69     128     160 ..     249     281 ..     242     301 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0027
    TIGR04008 145 igdgtvvgarssvfksl.pankicrgnpavvvr 176
                  igd+ v+ga +sv+ ++  an++  g  avv++
  MMETSP1174-20130828|11263_1 248 IGDDVVLGAGASVLGNIyIANEVTIGARAVVTK 280
                  566777777777765542467777777777765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0018
    TIGR04008 128 gekcwlatdvfvapgvtigdgtvvgarssvfks 160
                  g+ + l +   v   + i ++  +gar+ v ks
  MMETSP1174-20130828|11263_1 249 GDDVVLGAGASVLGNIYIANEVTIGARAVVTKS 281
                  333333333333333333444444444444443 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0026      0.99     635     669 ..     205     236 ..     192     242 .. 0.78
   2 ?    3.6   0.1    0.0093       3.5     648     681 ..     248     281 ..     244     296 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0026
    TIGR02353 635 lfedrvlkvdtvtigdgatlgpsaivlygavvged 669
                  lf d       ++ig+ atlg +  +l g+++g++
  MMETSP1174-20130828|11263_1 205 LFMDH---AHGIVIGETATLGRRCTILHGVTLGNK 236
                  45443...4679*********************97 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0093
    TIGR02353 648 igdgatlgpsaivlygavvgedavlgpdslvMkg 681
                  igd ++lg +a vl +  + ++ ++g  ++v k+
  MMETSP1174-20130828|11263_1 248 IGDDVVLGAGASVLGNIYIANEVTIGARAVVTKS 281
                  7777777777777777777777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 876.18
//
Query:       MMETSP1174-20130828|11266_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1174-20130828|11262_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-26   90.5   0.1    9.9e-24   82.0   0.0    2.8  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    7.7e-14   49.1   0.7    1.4e-09   35.1   1.6    2.7  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    1.1e-13   48.5   1.7    3.5e-11   40.3   1.8    3.3  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      3e-08   30.9   0.3    1.4e-06   25.4   0.5    2.6  2  TIGR02053 MerA: mercuric reductase
    1.9e-06   24.8   2.6    0.00072   16.3   1.4    4.1  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.9e-06   23.9   0.1     0.0001   18.8   0.1    2.8  3  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    8.8e-06   22.3   0.6      0.018   11.4   0.1    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    4.6e-05   19.8   0.8    0.00017   17.9   0.5    1.7  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0011   15.7   3.0       0.14    8.7   0.1    3.4  4  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0013   15.6   0.5      0.089    9.5   0.3    2.3  2  TIGR03452 mycothione_red: mycothione reductase
     0.0023   14.2   0.2        1.9    4.6   0.0    3.2  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.003   14.2   0.2        0.6    6.6   0.0    2.3  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0047   13.6   0.2        2.9    4.5   0.0    3.0  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.028       8.9     139     167 ..      50      79 ..       4      82 .. 0.69
   2 !   82.0   0.0   3.1e-26   9.9e-24      66     287 ..     142     399 ..      59     403 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.028
    TIGR03169 139 akaseetk.slavvGgGaagvElalalrkr 167
                  a a+++t+ +++v+G G a+v  a ++  r
  MMETSP1174-20130828|11262_1  50 APAQTSTReKVVVLGTGWASVKFAQNIDTR 79 
                  4455555559************99998765 PP

  == domain 2    score: 82.0 bits;  conditional E-value: 3.1e-26
    TIGR03169  66 kagaelvedeatgldleerkvllae..........reeisydvlsldvGsttalsevegaadkavpvKPleellaawe.........ellekakaseetkslavvGgGaagvElala........lrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevedealll.....aegetleadavllatgakapawLaesglsl...dedGflavkktLqslshpevFaaGDcavikeap 287
                  +++ ++ e+ a+++d +++kv++a+          + e++yd l++ vG+ +++  + g +++a+  K +e++l+ ++         ++++ +++++++ s+ vvGgG  gvE a+         l+ +++++ + ++++l+ s++++l+++ +kv ++ ++l++ + ++v++k+ vtev+++a+++     +e  ++++  vl++tg+ a++++++   s+   +++  l++++t+++++ ++v+++GDc ++ e++
  MMETSP1174-20130828|11262_1 142 FKRSKFLEAAAMEIDYKNNKVVCADisdfvggsdaSFEVEYDKLVVAVGASSNTFGTPGVKENAMFLKEIEDSLKLRNvladlfetaHMEKDLDKKKDMLSICVVGGGPTGVESAVEmddyirddLASLYPEEIALTKINLIqSAGDILNTYDQKVSEYSTKLMKDSTVNVITKTVVTEVKPDAITVksresGESYQIKTPLVLWSTGVTASPLVKAVMDSVpeqTKRNALETDRTMKVKGLDNVYSVGDCSTVVEEQ 399
                  578899****************98733333322223479********************************99886541111111115666778888889****************9888877777777777777788998888899************************************8888555435566789999************9986554421267899**********************998876 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00037      0.12     148     181 ..      56      89 ..      48     104 .. 0.88
   2 !   35.1   1.6   4.4e-12   1.4e-09      80     287 ..     153     397 ..     138     407 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00037
    TIGR03385 148 kvekvvviGgGyiglemvealkergkevtliers 181
                    ekvvv+G+G+ ++  + ++ +r+ +vt+i   
  MMETSP1174-20130828|11262_1  56 TREKVVVLGTGWASVKFAQNIDTRKYDVTVISPR 89 
                  5689**************************9765 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 4.4e-12
    TIGR03385  80 ikvdkeektvvvknn.....ktnekyeesyDkLilstGAkpkileiegieldavf........tlrn....ledaeaikkyldkkk.vekvvviGgGyiglemv....ealke.......rg...kevtliersekilnkllDeeiakiveeelekkeielrlneevksvegeekve.vltsgkvyq..aDlvilavGvk..PnselikssqlklgkkGaikvnekfqts.veniyaiGDvaeskn 287
                  +++d +++ vv  +        + ++e  yDkL+++ GA++++  ++g++ +a+f         lrn    l ++ +++k ldkkk + ++ v+GgG  g+e +    + +++             ++ li+ +  i  ++ D+ ++++ +  +++  +++ ++  v++v+ + + +    sg+ yq  + lv+ ++Gv   P ++ + +s  + +k+ a+ ++  ++    +n+y++GD+ ++ +
  MMETSP1174-20130828|11262_1 153 MEIDYKNNKVVCADIsdfvgGSDASFEVEYDKLVVAVGASSNTFGTPGVKENAMFlkeiedslKLRNvladLFETAHMEKDLDKKKdMLSICVVGGGPTGVESAvemdDYIRDdlaslypEEialTKINLIQSAGDI-LNTYDQKVSEYSTKLMKDSTVNVITKTVVTEVKPDAITVkSRESGESYQikTPLVLWSTGVTasPLVKAVMDSVPEQTKRNALETDRTMKVKgLDNVYSVGDCSTVVE 397
                  5666666666655541111145789***********************987777722222222233311113456667777765542789*******9998754111133332111111122222578999******.6789*****************************998866467778877621568999999853388999999889999***********97548*********99865 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.028       8.8     165     200 ..      52      87 ..      25      95 .. 0.83
   2 !   40.3   1.8   1.1e-13   3.5e-11     159     310 ..     229     394 ..     163     407 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.028
    TIGR01350 165 elkevpeslvivGgGviGvEfasifaklGvkvtvie 200
                  + +++ e++v++G G   v fa+   +   +vtvi 
  MMETSP1174-20130828|11262_1  52 AQTSTREKVVVLGTGWASVKFAQNIDTRKYDVTVIS 87 
                  55677899**************************96 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.1e-13
    TIGR01350 159 tseealelkevpeslvivGgGviGvEfasifakl.....G.........vkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtn.vpgiyaiGDvig 310
                  + e+ l  k+   s+ +vGgG  GvE a+ + ++               +k+ +i+ +  il++ d++vs+  +k +k++ v+++t++ vtev+   d+++v+ +++ e  ++++  vL + G++++     +     e+++r+a+++d++++++ ++++y +GD+  
  MMETSP1174-20130828|11262_1 229 HMEKDLDKKKDMLSICVVGGGPTGVESAVEMDDYirddlAslypeeialTKINLIQSAGDILNTYDQKVSEYSTKLMKDSTVNVITKTVVTEVKP--DAITVKSRESgESYQIKTPLVLWSTGVTASPLVKAVMDSVPEQTKRNALETDRTMKVKgLDNVYSVGDCST 394
                  456667778888899**********9776544321111111112222237999**************************************6655..55555554444899*************9986555555555577999**********975899******864 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.091        29     164     198 ..      54      88 ..      40      96 .. 0.83
   2 !   25.4   0.5   4.5e-09   1.4e-06     127     310 ..     180     395 ..     140     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.091
    TIGR02053 164 dkipeslvviGggaiavElaqlfarlGsevtllqr 198
                    + e++vv+G+g  +v +aq +     +vt++  
  MMETSP1174-20130828|11262_1  54 TSTREKVVVLGTGWASVKFAQNIDTRKYDVTVISP 88 
                  445699****************9999999999875 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 4.5e-09
    TIGR02053 127 vvgakrvliAtGarpavPeipGLkeae.....................yltseelleldkipeslvviGggaiavElaqlfa...r..lGs.........evtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLn.LekvgvklderGeilvdeklrts.npkiyAAGDvikg 310
                  v +++++++A+Ga++++   pG+ke                           e+ l+++k   s+ v+Ggg  +vE a  +    r  l s         ++ l+q +  +l+++++++s++ ++l+++  v+v++++ v++v+    ++++v+  +++++ +++   +l  tG ++       ++ v  +  +r  ++ d +++ +   ++y  GD+ + 
  MMETSP1174-20130828|11262_1 180 V-EYDKLVVAVGASSNTFGTPGVKENAmflkeiedslklrnvladlfeTAHMEKDLDKKKDMLSICVVGGGPTGVESAVEMDdyiRddLASlypeeialtKINLIQSAGDILNTYDQKVSEYSTKLMKDSTVNVITKTVVTEVKP---DAITVKSRESGESYQIKTPLVLWSTGVTASPLVKAvMDSVPEQ-TKRNALETDRTMKVKgLDNVYSVGDCSTV 395
                  4.45559***************9998779999999999999888764444445566677777899*********998854321112112222222222237899***************************************99...68889999999999************87543322415555555.55556*******9873689******9654 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.07        22     142     176 ..      58      92 ..      54     104 .. 0.89
   2 ?   -1.5   0.0      0.58   1.8e+02      88     120 ..     169     201 ..     140     208 .. 0.65
   3 !   16.3   1.4   2.3e-06   0.00072     182     284 ..     300     402 ..     237     409 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.07
    TIGR01292 142 kevavvGggdsAveealyLskiakkVtlvhrrdkl 176
                   +v+v+G g + v+ a+ +     +Vt+++ r+ +
  MMETSP1174-20130828|11262_1  58 EKVVVLGTGWASVKFAQNIDTRKYDVTVISPRNFF 92 
                  589***************************99977 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.58
    TIGR01292  88 pfkvltedekeykakaviiAtGakarklgikge 120
                   f+  ++ + e++ + +++A+Ga++   g +g 
  MMETSP1174-20130828|11262_1 169 DFVGGSDASFEVEYDKLVVAVGASSNTFGTPGV 201
                  455555556677788889999998888887764 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 2.3e-06
    TIGR01292 182 llerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiG..hepntellkel.leldeegyivvdeemrTs.veGvfaaGDvrdkslrQvvt 284
                  +  +l+k + ++v+++++v+e+k d     +++k+++ +e+ ++k+  v    G   +p  + ++++  e ++++ + +d++m+ + ++ v+++GD+++ + +Q+++
  MMETSP1174-20130828|11262_1 300 YSTKLMKDSTVNVITKTVVTEVKPD----AITVKSRESGESYQIKTPLVLWSTGvtASPLVKAVMDSvPEQTKRNALETDRTMKVKgLDNVYSVGDCSTVVEEQLMM 402
                  4568889999***********9987....58999******************9955578899999996789999********997659**********998888765 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.18        56     166     185 ..      57      76 ..      32      90 .. 0.82
   2 ?    0.5   0.0      0.12        38      97     150 ..     145     201 ..     120     217 .. 0.77
   3 !   18.8   0.1   3.2e-07    0.0001     176     307 ..     262     397 ..     238     449 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.18
    TIGR01424 166 PksilvvGgGyiavefagif 185
                   ++++v+G+G+ +v fa+ +
  MMETSP1174-20130828|11262_1  57 REKVVVLGTGWASVKFAQNI 76 
                  5799************9755 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
    TIGR01424  97 kkllakagvellegraelvdantvevle..dgk.tytaekiliavGgrpvkpelPGa 150
                   k+l+ a++e+   + ++v a+  +     d+  ++  +k+++avG+ +     PG 
  MMETSP1174-20130828|11262_1 145 SKFLEAAAMEIDYKNNKVVCADISDFVGgsDASfEVEYDKLVVAVGASSNTFGTPGV 201
                  478999999999999999998888766544554578889*******99988888885 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3.2e-07
    TIGR01424 176 yiavefagifrG.l.GvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtls.kdeeivadvvllatGrv..PnvkglgleaaGvelndagaiavdeysrts.vpsiyavGdvtdrin 307
                  yi  ++a+++   +  +k++l+    +il+ +d++v    ++ +++  +++++ktv+++++ ++  +k+  s ++ +i +  vl +tG +  P vk   + ++  e  +++a+  d+  + +  +++y+vGd +  ++
  MMETSP1174-20130828|11262_1 262 YIRDDLASLYPEeIaLTKINLIQSAGDILNTYDQKVSEYSTKLMKDSTVNVITKTVVTEVKPDAITVKSRESgESYQIKTPLVLWSTGVTasPLVKA--VMDSVPEQTKRNALETDRTMKVKgLDNVYSVGDCSTVVE 397
                  66666666664312135789999999***********************************9999999888868889***********751155554..44555577788******99887538********987665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00032       0.1     185     229 ..     214     257 ..     183     267 .. 0.76
   2 !   11.4   0.1   5.7e-05     0.018     396     496 ..     303     402 ..     282     415 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00032
    TIGR03140 185 ridlaellekleekaaekaeeaeeekekydvlvvGgGPagaaaai 229
                   ++l+++l+ l e+a + +++ +++k+   + vvGgGP g+ +a+
  MMETSP1174-20130828|11262_1 214 SLKLRNVLADLFETA-HMEKDLDKKKDMLSICVVGGGPTGVESAV 257
                  456777888887776.67788889999999999999999998887 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 5.7e-05
    TIGR03140 396 klkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpn..teflkdav.elnrrGeividergrts.vkGifaaGdvttvpykqiii 496
                  kl + s v+++t++  +e++ d     ++++k r+s+e+ +++   v+   G+ +    + + d+v e+++r  +++d++ + + ++ +++ Gd++tv+  q+++
  MMETSP1174-20130828|11262_1 303 KLMKDSTVNVITKTVVTEVKPD-----AITVKSRESGESYQIKTPLVLWSTGVTASplVKAVMDSVpEQTKRNALETDRTMKVKgLDNVYSVGDCSTVVEEQLMM 402
                  5555566667766666666665.....9************************8865223444454438999*******9988753789***********999886 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.5   5.4e-07   0.00017      64     280 ..     148     395 ..     134     424 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.4e-07
    TIGR02374  64 yekhgikl.lvnervikidreeksvitdagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaa.akrtkka...............aviGgGLLGLeaaraLknlGld..vsvielapllmakqlDqtagrlLqrelekkG..ltvlleketveivkes.ve..kaerlrfk...DGs..sleadlvvlaaGir..PrdeLaaeaGlkvndrrGiivndsmqtsd.PdiyavGecaeh 280
                   e   +++ + n++v+  d  + +  +da   ++yDkL++a G+++     pG  ++++f  ++ieD   l+++ a  ++ a                v+GgG  G+e+a+ + ++  d   s       l +  l q ag +L++  +k     t l++  tv+++ ++ v   k + + +k    G+  ++++ lv+ ++G+   P  +  +++  + ++r  + ++  m+ +   ++y+vG+c+ +
  MMETSP1174-20130828|11262_1 148 LEAAAMEIdYKNNKVVCADISDFVGGSDASFEVEYDKLVVAVGASSNTFGTPGVKENAMF-LKEIEDSLKLRNVlADLFETAhmekdldkkkdmlsiCVVGGGPTGVESAVEMDDYIRDdlASLYPEEIALTKINLIQSAGDILNTYDQKVSeySTKLMKDSTVNVITKTvVTevKPDAITVKsreSGEsyQIKTPLVLWSTGVTasPLVKAVMDSVPEQTKRNALETDRTMKVKGlDNVYSVGDCSTV 395
                  5555555547888899999999888999*************************9777665.79****9999986355556668888899***********************99985552223333344566777888888888764333221123334555566555553221123444444112344226899999999999633666766777777777888889999998752679999999865 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.17        53     149     182 ..      54      87 ..      43      92 .. 0.85
   2 ?    4.1   0.1     0.011       3.6       2      19 ..     243     260 ..     242     269 .. 0.89
   3 !    8.7   0.1   0.00045      0.14     201     289 ..     303     393 ..     276     403 .. 0.74
   4 ?   -0.2   0.0      0.24        74     171     231 ..     386     448 ..     379     457 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.17
    TIGR04018 149 pyvkqkvvvvGgknsavdaalelyrkgaevtlvv 182
                  + +++kvvv+G+  ++v+ a ++  +  +vt++ 
  MMETSP1174-20130828|11262_1  54 TSTREKVVVLGTGWASVKFAQNIDTRKYDVTVIS 87 
                  557789**************99999999999986 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
    TIGR04018   2 viiiGaGPiGlaaaieak 19 
                  ++++G+GP+G+ +a+e++
  MMETSP1174-20130828|11262_1 243 ICVVGGGPTGVESAVEMD 260
                  789************986 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00045
    TIGR04018 201 nrikegkikalfesevkeieeesvtletp.egeveeiendfvlaltGyrpdlelleklgveleede.kipvydeetmEt.nveglylaGvva 289
                   ++k+ ++++  ++ v+e++++++t++++ +ge+ +i++  vl  tG ++   l++++  ++ e++ ++++  ++tm    ++++y +G ++
  MMETSP1174-20130828|11262_1 303 KLMKDSTVNVITKTVVTEVKPDAITVKSReSGESYQIKTPLVLWSTGVTAS-PLVKAVMDSVPEQTkRNALETDRTMKVkGLDNVYSVGDCS 393
                  5678899*******************98868999*************9875.4555554445444424445555666541577888877665 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.24
    TIGR04018 171 lyrkgaevtlvvrgeelsekvkyWvkpdlen..rikegkikalfesevkeieeesvtletpeg 231
                  +y  g   t+v  +  +++  k + k+dl+n   ++ ++i++l+e++v e  + +v le+   
  MMETSP1174-20130828|11262_1 386 VYSVGDCSTVVEEQLMMDSAEKLYKKADLNNdgSLDFEEIRTLLEASVAEFPQVEVLLEDMAR 448
                  56667777889999999999999999**9984458999***************9999998643 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.015       4.9     170     200 ..      58      88 ..      52      95 .. 0.87
   2 !    9.5   0.3   0.00028     0.089     193     360 ..     278     448 ..     256     479 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.015
    TIGR03452 170 eslvivGgGyialefahvfsalGtkvtlvar 200
                  e++v++G+G+ +++fa+  ++   +vt++  
  MMETSP1174-20130828|11262_1  58 EKVVVLGTGWASVKFAQNIDTRKYDVTVISP 88 
                  789************************9974 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00028
    TIGR03452 193 tkvtlvarsekllrkldediserftelakkk.fdvrlgrnvtaaeqdddgvtle.lddGs..tveadvllvatGrvpngdlldaeaaGv.evdedgrvkvdeyqr.tsaegvfalGdvsspyqlkhvan.aearvvkhnllkdedlkkadhdf.vpaavftdpqiatvGlteqear 360
                  tk+ l++ +  +l++ d+++se  t+l k   ++v +++ vt+++   d +t++  + G+  ++++ ++l +tG  + + l++a +  v e ++ + ++ d   +    ++v+++Gd s+  + + + + ae    k +l +d +l   + ++ + a+v   pq+ +  l e+ ar
  MMETSP1174-20130828|11262_1 278 TKINLIQSAGDILNTYDQKVSEYSTKLMKDStVNVITKTVVTEVKP--DAITVKsRESGEsyQIKTPLVLWSTGV-TASPLVKAVMDSVpEQTKRNALETDRTMKvKGLDNVYSVGDCSTVVEEQLMMDsAEKLYKKADLNNDGSLDFEEIRTlLEASVAEFPQVEV--LLEDMAR 448
                  7899999999************999998875145555555555554..455554135555126788888889995.5567777777777245566778888776636789********9988777665514555556677777777766655415566777777764..4555555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.028         9     375     409 ..      53      87 ..      34      91 .. 0.86
   2 !    4.6   0.0    0.0059       1.9     373     397 ..     234     258 ..     222     262 .. 0.76
   3 ?    3.0   0.1     0.018       5.6     551     591 ..     299     340 ..     273     395 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.028
    TIGR03997 375 karrrkkvlvvGgGPaGleaaataarrGhrvtlle 409
                  ++++r kv+v+G+G a ++ a+   +r ++vt++ 
  MMETSP1174-20130828|11262_1  53 QTSTREKVVVLGTGWASVKFAQNIDTRKYDVTVIS 87 
                  3456699************************9975 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0059
    TIGR03997 373 lkkarrrkkvlvvGgGPaGleaaat 397
                  l k +    ++vvGgGP+G+e+a++
  MMETSP1174-20130828|11262_1 234 LDKKKDMLSICVVGGGPTGVESAVE 258
                  44445556799**********9975 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.018
    TIGR03997 551 lwnrr.alekgielitdlvvievdgatvkvvhrytgeveela 591
                  ++  + + + ++++it++vv+ev+  +++v  r +ge+ +++
  MMETSP1174-20130828|11262_1 299 EYSTKlMKDSTVNVITKTVVTEVKPDAITVKSRESGESYQIK 340
                  34444055678999***********97777777777766655 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.005       1.6     129     162 ..      53      86 ..      37      89 .. 0.91
   2 !    6.6   0.0    0.0019       0.6     217     289 ..     180     257 ..     149     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.005
    TIGR01316 129 apstkkkvaviGaGpaGlavaselakkGhevtvf 162
                  + st++kv v+G+G a +  a+++  + ++vtv 
  MMETSP1174-20130828|11262_1  53 QTSTREKVVVLGTGWASVKFAQNIDTRKYDVTVI 86 
                  56899**************************995 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0019
    TIGR01316 217 ekydavfigtGaGlpkllnieGeelkgvys..andfl.trvnlmkayefpkkdtpvevgk...kvvviGgGntavdaar 289
                   +yd + +++Ga    ++  +G + + ++     d l +r  l   +e+++++  ++  k   ++ v+GgG t v++a 
  MMETSP1174-20130828|11262_1 180 VEYDKLVVAVGASSNTFG-TPGVKENAMFLkeIEDSLkLRNVLADLFETAHMEKDLDKKKdmlSICVVGGGPTGVESAV 257
                  589**********99999.9999999988522456552688889999****99999999833346799****9999986 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017       5.3     136     172 ..      50      86 ..      45      90 .. 0.91
   2 !    4.5   0.0     0.009       2.9     107     161 ..     199     258 ..     183     262 .. 0.78
   3 ?    1.6   0.0     0.066        21     370     454 ..     309     393 ..     270     397 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.017
    TIGR01317 136 rppkkrtGkkvavvGsGPaGlaaadqlnraGhtvtvf 172
                   p+++ t +kv v+G+G a +  a+++    ++vtv 
  MMETSP1174-20130828|11262_1  50 APAQTSTREKVVVLGTGWASVKFAQNIDTRKYDVTVI 86 
                  578999*****************************96 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.009
    TIGR01317 107 lgisedpvtiksie.....laiidkgfeeGwvkPrppkkrtGkkvavvGsGPaGlaaadq 161
                   g++e+++ +k+ie     ++++   fe   ++    kk+    ++vvG GP+G+ +a +
  MMETSP1174-20130828|11262_1 199 PGVKENAMFLKEIEdslklRNVLADLFETAHMEKDLDKKKDMLSICVVGGGPTGVESAVE 258
                  46777777777777333333466777888899999999****************999865 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.066
    TIGR01317 370 kvkavrtvevelkkdedGkyeleevpgseevleadlvllalGfvgp.eqallddlgvdkdergnikaeldesetsidGvfaaGdar 454
                   v+ +  + v+ +k +    + +e +g    +++ lvl + G +++   + + d   ++++r+ ++++   +   +d v+++Gd+ 
  MMETSP1174-20130828|11262_1 309 TVNVITKTVVTEVKPDAITVKSRE-SGESYQIKTPLVLWSTGVTASpLVKAVMDSVPEQTKRNALETDRTMKVKGLDNVYSVGDCS 393
                  455555445555545444434444.4445567899*******987514455666666789999998888888899999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.19s 00:00:00.87 Elapsed: 00:00:00.78
# Mc/sec: 1010.22
//
Query:       MMETSP1174-20130828|11264_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-26   91.5   0.0    1.1e-15   55.3   0.0    3.3  3  TIGR03417 chol_sulfatase: choline-sulfatase
  ------ inclusion threshold ------
      0.022   11.7   0.0      0.037   11.0   0.0    1.3  1  TIGR03397 acid_phos_Burk: acid phosphatase, Burkholderia-type
      0.087    9.1   0.0       0.11    8.7   0.0    1.1  1  TIGR01307 pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.4e-11     2e-08       3     101 ..     124     226 ..     122     242 .. 0.87
   2 !   55.3   0.0   8.4e-19   1.1e-15     179     356 ..     327     494 ..     312     536 .. 0.81
   3 ?   -0.2   0.0     0.055        76     404     430 ..     583     609 ..     572     618 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.4e-11
    TIGR03417   3 pnililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefasd....iptyahylraaGyktalsGkm 101
                  pn+l+l  d   +     + +a  lk P +  la+++++f+   + sP+c P+ra++++G+      v +n   ++ +     +t    l++aGy t+ +Gk 
  MMETSP1174-20130828|11264_1 124 PNFLFLFPDGWRADWDGFHPEAAPLKLPIIRSLASKGMRFTHVTVPSPICNPSRAAIITGREYDMASVPNNQISMPKSeqfnALTTIWALSNAGYFTMEAGKE 226
                  8999999999999999999999***************************************9999999999888765312225788889************95 PP

  == domain 2    score: 55.3 bits;  conditional E-value: 8.4e-19
    TIGR03417 179 ekdarPfcltvslthPhdPyvirkkywdlyedeeillPevaleleeqdphskrllkaldlkekditeeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperleagrveaavstvdllPtlvelagveleevlpald 356
                  + ++rPf l v +  Ph P++++ +  +   +   + P   +++  +d +s    +++ l +k++      + r a  + +  +d  +G l+e +++ +  + t vvf+sdhG+mlG++   +k + + gs+ vPl+++ pe  +   ++ +v++vdl  t+ + agv++   +++l 
  MMETSP1174-20130828|11264_1 327 RPKDRPFFLQVNFPGPHAPFITSPDGLNAVVNGRFPAP---FDVPREDKRSSYQDSVC-LPNKPL------SERCALAGMMEDLDVGFGMLIEEVQRQGELNRTFVVFSSDHGEMLGDHSSVHKGQPWIGSSNVPLIITGPEVSQGVVHRYPVASVDLAATFLDYAGVATPVGMTSLS 494
                  45689999999999999999999887777766666665...45555566665433333.344444......458899999**************************************************************888888999*****************9988777554 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.055
    TIGR03417 404 eqlydleadPkelenlaeepehaetle 430
                  e ly+++adP e++ l ++ + a+  +
  MMETSP1174-20130828|11264_1 583 EALYNVSADPYEMNPLRNAVASARLCR 609
                  689**********99998877776655 PP

>> TIGR03397  acid_phos_Burk: acid phosphatase, Burkholderia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.7e-05     0.037     371     434 ..     403     466 ..     383     477 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.7e-05
    TIGR03397 371 hiaevikklqksPqwknmvvvvtydenGGfwdhvapPkGdrwGPGtriPalvvsPfakkGyvdh 434
                      +i+++q+  + +++ vv + d    + dh ++ kG  w   + +P ++  P   +G v +
  MMETSP1174-20130828|11264_1 403 GFGMLIEEVQRQGELNRTFVVFSSDHGEMLGDHSSVHKGQPWIGSSNVPLIITGPEVSQGVVHR 466
                  556789999*****************999*******************************9975 PP

>> TIGR01307  pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   8.4e-05      0.11     412     503 ..     398     495 ..     391     496 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 8.4e-05
    TIGR01307 412 eavDkelgrivealkkvg....itllltaDhGna..eemkdeaenpvtahtvnpvpfvlvepkn..vkavkeggvLadiaptiLellgleqPaemtgksl 503
                  e +D+  g ++e ++++g    + ++  +DhG    ++ + ++++p+      +vp+++++p+     +++   +  d+a+t L++ g+ +P  mt+ sl
  MMETSP1174-20130828|11264_1 398 EDLDVGFGMLIEEVQRQGelnrTFVVFSSDHGEMlgDHSSVHKGQPWI--GSSNVPLIITGPEVsqGVVHRYPVASVDLAATFLDYAGVATPVGMTSLSL 495
                  5667777777777766552211567889****7522444444555555..5689*******7653344566677789*******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 1871.31
//
Query:       MMETSP1174-20130828|11268_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 920.15
//
Query:       MMETSP1174-20130828|11269_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1484.20
//
Query:       MMETSP1174-20130828|11270_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 988.03
//
Query:       MMETSP1174-20130828|11274_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 775.94
//
Query:       MMETSP1174-20130828|11273_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   31.4   0.1    0.00017   18.7   0.0    2.3  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    4.3e-07   27.0   0.0      0.003   14.4   0.0    2.1  2  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.013   12.2   0.0       0.58    6.7   0.0    2.2  2  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-07   0.00017     278     340 ..     235     299 ..     221     306 .. 0.84
   2 !   10.2   0.0   4.5e-05     0.062     281     309 ..     382     410 ..     367     423 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.2e-07
    TIGR02038 278 rgivvtevdPngPaaragllvrdvilkldnkevi.saeelmdrv.aelrPgskvlvtvlrkgkql 340
                  r +vv++v+PngPa  a + + d+i k+d+  v+ +  e ++ +  ++ Pg+++++ v r ++++
  MMETSP1174-20130828|11273_1 235 RFVVVQKVEPNGPAETATFEPLDIIEKIDDLVVKdGPDEAVEALqRKVIPGQVIEFKVCRLDNHI 299
                  669**************************98775255666666625799***********98765 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 4.5e-05
    TIGR02038 281 vvtevdPngPaaragllvrdvilkldnke 309
                  +vt+vd ++Pa +ag+++ dvil+ d  e
  MMETSP1174-20130828|11273_1 382 IVTQVDVDSPAEKAGFRKFDVILSADLME 410
                  799********************998655 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-06     0.003     230     319 ..     205     297 ..     183     345 .. 0.77
   2 !   10.5   0.0   3.4e-05     0.046     262     287 ..     382     407 ..     372     433 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.2e-06
    TIGR02037 230 kgkvkrglLGvkiqevtkdlakslgleka.kGalvaevlkgspAekaGlkaGDvilkvngkkiksaad..lreaigtlkpgkkvklkilRkgk 319
                  k+++++g   +   +v +d+   ++l +  + ++v++v +++pAe+a+ +  D+i k+++  +k+  d  +++   ++ pg+ +++k++R ++
  MMETSP1174-20130828|11273_1 205 KNRIQQGQSRILYLKVGEDATLGVDLYHCcRFVVVQKVEPNGPAETATFEPLDIIEKIDDLVVKDGPDeaVEALQRKVIPGQVIEFKVCRLDN 297
                  5566666666666667777777777666557799*****************************996441144555678899999999999654 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.4e-05
    TIGR02037 262 lvaevlkgspAekaGlkaGDvilkvn 287
                  +v++v  +spAekaG ++ Dvil+ +
  MMETSP1174-20130828|11273_1 382 IVTQVDVDSPAEKAGFRKFDVILSAD 407
                  79*********************965 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00043      0.58     204     261 ..     237     298 ..     223     308 .. 0.79
   2 ?    2.9   0.0    0.0063       8.6     204     230 ..     381     407 ..     362     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00043
    TIGR00054 204 lvlsdvvdnspaekaGlkeGDkilkidgeklkswrd.lvklvke..npeksleikveR.nge 261
                  +v+++v +n+pae a +++ D i kid+  +k+  d  v +++    p++++e kv R +++
  MMETSP1174-20130828|11273_1 237 VVVQKVEPNGPAETATFEPLDIIEKIDDLVVKDGPDeAVEALQRkvIPGQVIEFKVCRlDNH 298
                  5899***********************99999875524555543125788888888774444 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0063
    TIGR00054 204 lvlsdvvdnspaekaGlkeGDkilkid 230
                  +++++v   spaekaG+++ D il+ d
  MMETSP1174-20130828|11273_1 381 PIVTQVDVDSPAEKAGFRKFDVILSAD 407
                  6788899999***********999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.65
# Mc/sec: 1573.72
//
Query:       MMETSP1174-20130828|11272_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 1817.21
//
Query:       MMETSP1174-20130828|11271_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-60  203.6   0.0    1.3e-60  203.3   0.0    1.1  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0   3.2e-64   1.3e-60      17     339 ..     243     566 ..     229     571 .. 0.92

  Alignments for each domain:
  == domain 1    score: 203.3 bits;  conditional E-value: 3.2e-64
    TIGR01357  17 laekasklvvitdeeveklvaekleealkslgvevlvlvvpdgeesKsletvaklldqlleek.lerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllkl..aelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyklsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKK.negskiklvlleeiGkaalasevteeel 339
                  l+ ++ ++++++d +v kl++e+l+  + sl  ++++++ p  e +K+++++  +ld+l + + l r++ ++aiGGGv++D+aGF+ a + RG++   vPTtll+mvD+svG K+++n +  kN +G f+ P+  ++d  +l tl ++ +++G++E++K +l++d+ lf+ + ++   l+++  ++ e+++e+ikrs+ +  e +  D  e+ l + + fGH++   +E+ +++ l+HGeaVai   + + ++e +g++ + +++r++++  +lglp  +k  ++++++ k   +D   ++++ ++ +l++ iG+++ ++ +t+ e+
  MMETSP1174-20130828|11271_1 243 LEISTGRIIAVIDANVWKLHGETLRTWADSLDLKLDTVIAPGNEDHKTMDNCLFMLDELKRLDpLRRSEPVLAIGGGVLTDVAGFACALWRRGVPWARVPTTLLGMVDASVGIKVAVNYH-RKNGVGHFFSPTHTFVDAYFLGTLERADVISGCGEIMKAALVHDRTLFDLMDEHGVRLVDKnfENDEVADEIIKRSVDTMLECIGVDLWEEALLRPMDFGHSFSRTLETDSTFYLRHGEAVAIDACMSTLIAEVKGYVTRAEADRVLDVYYRLGLPCMIKG-VTADTF-KRAARDIViHRDGLLRAPLPRGIGSCVYEDVFTDGEI 566
                  44455789***************************************************9975389999*************************************************98.8****************************************************9877554445677999******************************************************************************************97.766665.5566676669999*************99977766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1928.33
//
Query:       MMETSP1174-20130828|11275_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-26   90.5   0.9    2.7e-26   90.0   0.6    1.2  1  TIGR00293 TIGR00293: prefoldin, alpha subunit
  ------ inclusion threshold ------
          5    5.2  20.1       0.31    9.1   7.8    2.9  3  TIGR02641 gvpC_cyan_rpt: gas vesicle protein GvpC repeat


Domain annotation for each model (and alignments):
>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.6   1.3e-29   2.7e-26       1     127 [.      37     163 ..      37     172 .. 0.96

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 1.3e-29
    TIGR00293   1 lqqlaaelqqlqeevealqaeiaalraliaeleeaietleslkkaegkevLVpvgaglyvkakvkdadkvlVsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqkq 127
                  l+ql+  + q ++ ++a +++ ++l+ ++a++ +++++l+++ ++eg  +LVp++ +lyv++k+ d++k+lV++G+gyyvek++ +A + +++k + l+ +i +l++ + +++++  +i + ++q+ 
  MMETSP1174-20130828|11275_1  37 LDQLNGLKTQHDQDINAYSKNWQQLKGAQARFLTSRNCLSTIATEEGRSILVPLTGSLYVPGKICDTKKILVDVGTGYYVEKTVAQAQDLIDRKTKLLNMNIGDLESGILQKQRNHGTIVMIMKQRM 163
                  689**********************************************************************************************************999999999988887765 PP

>> TIGR02641  gvpC_cyan_rpt: gas vesicle protein GvpC repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.068   1.4e+02       2      18 ..      65      81 ..      64      81 .. 0.88
   2 ?   -1.0   0.2      0.22   4.5e+02      25      30 ..     121     126 ..     120     126 .. 0.54
   3 ?    9.1   7.8   0.00015      0.31      17      29 ..     160     172 ..     158     172 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.068
    TIGR02641  2 qqLqqetqEFLsqTaqE 18
                 q+++ +++  Ls++a+E
  MMETSP1174-20130828|11275_1 65 QARFLTSRNCLSTIATE 81
                 8899999999**99998 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.22
    TIGR02641  25 aQaqqL 30 
                  aQaq+L
  MMETSP1174-20130828|11275_1 121 AQAQDL 126
                  455555 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00015
    TIGR02641  17 qERlAQAkaQaqq 29 
                  ++R+AQA++Qaqq
  MMETSP1174-20130828|11275_1 160 KQRMAQAQQQAQQ 172
                  79**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 774.34
//
Query:       MMETSP1174-20130828|11276_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 598.66
//
Query:       MMETSP1174-20130828|11277_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 648.30
//
Query:       MMETSP1174-20130828|11280_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0092   12.9   1.5      0.017   12.0   0.3    1.8  2  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3     4e-06     0.017     117     152 ..      26      61 ..      12      62 .. 0.88
   2 ?   -1.3   0.0     0.046   1.9e+02      69     102 ..     143     179 ..     128     182 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4e-06
    TIGR00813 117 ldlylsllllalitilYtviGGlkAvvwtDtlqavi 152
                  +++++ +l+   +++ Yt++GG+ A++ tD l+++i
  MMETSP1174-20130828|11280_1  26 AAVTTTVLMRRDFIAPYTAVGGIVATFGTDLLKKAI 61 
                  567888999999*******************99876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.046
    TIGR00813  69 ltmpeylekRFgk...rilrilsvlililviflkisv 102
                  +++ + + +RF+     ++++ + l + ++++lk ++
  MMETSP1174-20130828|11280_1 143 MSLGDVILTRFDTrvaTAAVWSAYLATSVAFILKKVA 179
                  5566777777877333345666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 855.65
//
Query:       MMETSP1174-20130828|11278_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2561.30
//
Query:       MMETSP1174-20130828|11279_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.57
# Mc/sec: 1861.50
//
Query:       MMETSP1174-20130828|11282_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1498.08
//
Query:       MMETSP1174-20130828|11285_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.3   0.1        0.2    9.3   0.0    2.2  2  TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II


Domain annotation for each model (and alignments):
>> TIGR02199  rfaE_dom_II: bifunctional protein RfaE, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.047   1.9e+02     103     134 ..     275     306 ..     268     311 .. 0.78
   2 ?    9.3   0.0   4.8e-05       0.2       9      30 ..     360     381 ..     352     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.047
    TIGR02199 103 GgDykleelvgaelvesyGGevvllefeegks 134
                    D+k ++  ++  ve++GG+v + ++  ++ 
  MMETSP1174-20130828|11285_1 275 TDDHKPDRPDERMRVEKAGGQVGCRQMLMNRG 306
                  56888888899999********8887776654 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 4.8e-05
    TIGR02199   9 kgkkvvftnGcfDllhaGhvky 30 
                  ++  +v t+G++D+lh+ hv  
  MMETSP1174-20130828|11285_1 360 ERFIIVATDGIWDVLHSSHVVQ 381
                  445699*************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1190.60
//
Query:       MMETSP1174-20130828|11287_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|11291_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.90
# Mc/sec: 146.65
//
Query:       MMETSP1174-20130828|11292_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1174-20130828|11293_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 227.57
//
Query:       MMETSP1174-20130828|11290_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   18.7   0.0    0.00041   17.3   0.0    1.6  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
     0.0038   13.8   0.0      0.013   12.1   0.0    1.8  2  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
  ------ inclusion threshold ------
      0.027   11.2   0.0       0.29    7.8   0.0    2.2  2  TIGR03588 PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     3e-07   0.00041     120     324 ..     179     381 ..     175     390 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3e-07
    TIGR01977 120 eeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvle...idveklaidllaftGHKgLlgpqGiggllikekiklkpllsG.GtGsnSasleqpselPdrfeaGtlNtlgiagLkagikfiekigianikkkelkltekllegLkeikkvkiyGakdaakrvgvvSltl.egldseevaaild 324
                  ee+g +d + ++   k     ++++ aS     +++   i e++ e++  +l D+a   G+++   i    ++ d++  t HK+L gp G   ++ k  +++++  +G  t ++ ++  +   +P  ++ G  N  +i +L  ++k+ +  + ++ +k+ +k+ + + e+L  + +  + G +   +++ +v l+   g+d ++v  +l+
  MMETSP1174-20130828|11290_1 179 EETGSIDYDAMEASAKLYRPKLIVAGASAYSR-LIDYSRIREICDEHNAYMLSDMAHISGLVSagcIPSPFDTSDIVTTTTHKSLRGPRGAMIFYRKGLRSVNK--KGvETMYDLEDRINFAVFPG-LQGGPHN-HTICALATALKQANTAEFKAYQKQVMKNASVFAETLTGMGYNLVSGGT--DNHLLLVDLKKsRGIDGARVERVLE 381
                  57788888888888887755566677776655.557899******************99999733344555677899*************99999877666654..23034444444444444554.4444444.567777778888777777777777777777777777766666666633..3455555554313566666666655 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   9.5e-06     0.013     147     232 ..     192     271 ..     120     280 .. 0.75
   2 ?   -3.3   0.0      0.45   6.2e+02     259     298 ..     311     352 ..     306     364 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.5e-06
    TIGR00858 147 erg.errklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGedGrGll.eefglkkeevdilvgTlsKal.gslGavvv 232
                  +++ +r kliv+ +  S    +++ +++ +++++++a++l D AH  G + +   G++ + f++     di+++T  K+l g  Ga++ 
  MMETSP1174-20130828|11290_1 192 SAKlYRPKLIVAGA--SAYSRLIDYSRIREICDEHNAYMLSDMAHISGLVSA---GCIpSPFDT----SDIVTTTTHKSLrGPRGAMIF 271
                  45556666776654..5566789999***********************999...655144444....368888888888566788876 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.45
    TIGR00858 259 vaaalaaleliq..eeperreklakliarlrkeleklgfelk 298
                  ++a+ +al+  +  e ++ ++++ k+++ ++++l  +g++l+
  MMETSP1174-20130828|11290_1 311 ICALATALKQANtaEFKAYQKQVMKNASVFAETLTGMGYNLV 352
                  556666666655334455667777777777777777776665 PP

>> TIGR03588  PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00021      0.29     101     161 ..     179     237 ..     174     244 .. 0.76
   2 ?    0.1   0.0     0.045        62     241     329 ..     309     393 ..     300     399 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00021
    TIGR03588 101 kkdgnldekalekklaaaekkkikvivpVdfa.GksvdleaiaalakkhglklieDasHalG 161
                  +++g +d +a+e+  +     ++k+iv+   a  + +d ++i++++++h++ +++D +H  G
  MMETSP1174-20130828|11290_1 179 EETGSIDYDAMEASAK---LYRPKLIVAGASAySRLIDYSRIREICDEHNAYMLSDMAHISG 237
                  5666777776665443...367888887665525679**********************766 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.045
    TIGR03588 241 yRlsdiqaALglsqlkkldefvekRreiaalYdealkelavvllleesksksalHLyvillkaelklerkevfealreagigvqvhYiP 329
                  + ++ +++AL     +  +++ ++  + a++++e+l  + + l+    +  + +HL+ + lk++  ++ ++v + l+ a+i ++ + iP
  MMETSP1174-20130828|11290_1 309 HTICALATALKQANTAEFKAYQKQVMKNASVFAETLTGMGYNLV----SGGTDNHLLLVDLKKSRGIDGARVERVLELANIATNKNTIP 393
                  55555555555555555555555555555555555555554333....34566899999999999999999999999999999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 1230.24
//
Query:       MMETSP1174-20130828|11297_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1174-20130828|11289_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-21   72.6   0.0    4.4e-21   72.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.7e-06   23.5   0.1    1.2e-05   22.7   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   2.2e-24   4.4e-21       3     186 ..      68     241 ..      66     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 2.2e-24
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvta...ksDlYaWGLivleCLtGk 186
                  g+ +a+k + ++ ++++ l      ei +   L+h niv+ l   +     l    ey +G  lr++L+ +G L+ ++t+    q+L +l   h++G+ hRD+k  n++++a++   h k+ DFG +  +      ++    + + + G+P++ aPe ++g        k+D+++ G  v+e LtGk
  MMETSP1174-20130828|11289_1  68 GQYIAVKSVHTEGMNNADL-DAIEHEIRMIRSLQHTNIVRYLGTEKRRH-TLNIFLEYAAGGCLRQLLQEHGRLSEETTALFSHQILRGLDYLHSNGIAHRDIKGANVLLAAEG---HCKLADFGASKRV------EA--NSLVSGLKGTPHWMAPEVIKGQQTSHgwiKADVWSIGCTVIEMLTGK 241
                  5667888888776655554.45789*****************9988877.788888*******************************************************976...78999***87532......22..23456788*************988744449****************9 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.7e-09   1.2e-05      46     138 ..      91     191 ..      51     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.7e-09
    TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  +E+r++++++++ +   +  +  +++ +i +ey  g  l++ll+e+          + +++ + +  lH++gi+h D+  +N+++  ++++ l DfG +k+
  MMETSP1174-20130828|11289_1  91 HEIRMIRSLQHTNIVRYLGTEKRRHTLNIFLEYAAGGCLRQLLQEHGRlseettaLFSHQILRGLDYLHSNGIAHRDIKGANVLLaAEGHCKLADFGASKR 191
                  6777777777777777777788889999***************998778887776667888899999*****************94578889*****9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2155.82
//
Query:       MMETSP1174-20130828|11294_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|11288_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-89  295.8   0.0    3.1e-89  295.5   0.0    1.1  1  TIGR01012 Sa_S2_E_A: ribosomal protein S2
    6.3e-23   79.0   0.1    5.6e-12   43.2   0.0    2.1  2  TIGR01011 rpsB_bact: ribosomal protein S2


Domain annotation for each model (and alignments):
>> TIGR01012  Sa_S2_E_A: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.5   0.0   1.5e-92   3.1e-89       3     195 ..      14     207 ..      12     208 .. 0.99

  Alignments for each domain:
  == domain 1    score: 295.5 bits;  conditional E-value: 1.5e-92
    TIGR01012   3 lvpvdkylaagvhlGtqnktkdmekfiykvrsdGlyvldlrktderlklaakflaaie.PedilvvsariygqkpvkkfakvtGakaiaGrfiPGtltnpalkefvePevvvvtdPrvdkqalkeasevgiPivalvdtdnslrfvdlviPannkGkkslaliywllareilknrGvisaeeklevsveeflar 195
                  +++++k+laa+vh+Gtqn ++ m ++i+++r+dG++++++ kt+e+l laa++++aie P+d++++sar ygq++v kfa+ tGa+aiaGrf+PGt+tn+++k+f+eP+++++tdPr+d qa+keas+v++P++a++d+d++l+fvd++iPannkGk s++l+ywllare+l++rG i++++ ++v  ++f++r
  MMETSP1174-20130828|11288_1  14 EEDIQKLLAAQVHIGTQNSDFMMTEYIWRRRQDGIHIINIGKTWEKLILAARIIVAIEnPQDVIAISARPYGQRAVLKFAQHTGAQAIAGRFTPGTFTNQITKQFKEPRLLLITDPRTDSQAVKEASYVNLPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRMRGSIARDQTWNVCPDLFFHR 207
                  7899*******************************************************************************************************************************************************************************************998 PP

>> TIGR01011  rpsB_bact: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   1.3e-12   2.7e-09       4     104 ..      17     115 ..      15     119 .. 0.92
   2 !   43.2   0.0   2.7e-15   5.6e-12     154     221 ..     119     186 ..     114     190 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 1.3e-12
    TIGR01011   4 lkelleagvhfGhqtrrwnPkmkkfifeer.ngvhiidLektlqllkeayelvkevvkeekkilFvgtkkqakeivkeeakrvgvayvneRWlGGmLtnfkt 104
                  +++ll a vh+G q++ +   m ++i+  r +g+hii++ kt ++l  a  ++  ++++ ++++ ++ + + +++v + a+++g+  ++ R+  G+ tn  t
  MMETSP1174-20130828|11288_1  17 IQKLLAAQVHIGTQNSDF--MMTEYIWRRRqDGIHIINIGKTWEKLILAARIIV-AIENPQDVIAISARPYGQRAVLKFAQHTGAQAIAGRFTPGTFTNQIT 115
                  789*********999866..7*******99889****************99886.5788999*************************************766 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 2.7e-15
    TIGR01011 154 klPdllvvidtkkekiavaearklkiPvvalvdtncdPdlvdyviPgnddairsikLlvklladavle 221
                  k P ll++ d++ +  av+ea  +++Pv+a +d+++  + vd+ iP+n++   si Ll  lla  vl 
  MMETSP1174-20130828|11288_1 119 KEPRLLLITDPRTDSQAVKEASYVNLPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLR 186
                  579********************************************************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1043.04
//
Query:       MMETSP1174-20130828|11299_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|11302_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   13.0  21.4     0.0038   12.8  14.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   10.9  18.1      0.017   10.6  12.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8  14.8   1.9e-06    0.0038     718     889 ..       6     177 ..       1     185 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.9e-06
    TIGR02168 718 klrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekaslee 889
                   l++ + +le++l++ +++ ++le++v   +e + ++++ +   + + +  e++le+  ++ +   +++++  +ei++ ++ +k+ r++ ++++++l+  ++ ++e+e+ +e  ++++a++e++l++ + ++++ +e +++le  ++++ ++l+e+ + le+ +   + l++
  MMETSP1174-20130828|11302_1   6 LLEASKFKLEKALQQSEMKTAALEQQVIDKAELVLKAQELQGMGARQLQHSEAALEKRGSHEALLTDKLKASVREINKGNDIIKQMRADQRSVRSKLRLKSQVIREQERLIEGERQRVAEIERSLHRRTLETDQSQEAVKRLELDLKHAHDKLDESAKLLESNQHTITWLNK 177
                  5666677777788888888888888888888888887777777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888777777766555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  12.5   8.3e-06     0.017     707     871 ..      13     179 ..       2     192 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.3e-06
    TIGR02169 707 elssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels..eekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeel 871
                  +l+++l+++e k+ ++e+++   +e   k++e +   +++l++ e +le+  ++ + l  ++++  ++++k ++ ++++ a+++  ++k++ +++ ++++e  ++  ++r++eie++l++++le ++ +e+++ l+ + ++++++ +e +k +e+ +  +  l++el
  MMETSP1174-20130828|11302_1  13 KLEKALQQSEMKTAALEQQVIDKAELVLKAQELQGMGARQLQHSEAALEKRGSHEALLTDKLKASVREINKGNDIIKQMRADQRsvRSKLRLKSQVIREQERLIEGERQRVAEIERSLHRRTLETDQSQEAVKRLELDLKHAHDKLDESAKLLESNQHTITWLNKEL 179
                  33333333333333333333222222223333333334444444444444444444444444444444444444444444333211344444444444444444444444444444444444444444444444444444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 932.35
//
Query:       MMETSP1174-20130828|11306_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1112.99
//
Query:       MMETSP1174-20130828|11307_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1174-20130828|11301_1  [L=1382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.15s 00:00:00.89 Elapsed: 00:00:01.04
# Mc/sec: 1753.93
//
Query:       MMETSP1174-20130828|11308_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1098.49
//
Query:       MMETSP1174-20130828|11309_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|11310_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   33.6   1.8    1.4e-08   32.9   1.3    1.4  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
       0.88    4.9   8.6       0.91    4.9   6.0    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.3   6.7e-12   1.4e-08       1     105 []       1     110 [.       1     110 [. 0.69

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 6.7e-12
    TIGR03685   1 meYiyaaLllheagke.ineenlkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaa....aaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                  m+Y+   L+l+  gk+  + e++++vle +G+e+d++ +  +++ Le+ d++e ++  +       ++          aa+  ++++ee+ ee+eeeee ++ g  ++FG
  MMETSP1174-20130828|11310_1   1 MKYVSVYLMLKLGGKDkPTAEEITTVLETVGIEADQTVLGRMMSELEGKDVNELMAFGSSKLSGCGGGGggggGGGGGAAAGGEAAAEEKVEEEEEEEEIDMGGGMSMFG 110
                  8899999999988875258999*********************************9888777444333211222222223322333334445555666666777777887 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.0   0.00044      0.91     962     995 ..      66      99 ..      12     105 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00044
    TIGR00927 962 ekGvdgeggsdGGdseeeeeeeeeeeeeeeeeee 995
                    G  g+gg+ GG +   e   ee+ eeeeeeee
  MMETSP1174-20130828|11310_1  66 GGGGGGGGGGGGGAAAGGEAAAEEKVEEEEEEEE 99 
                  3344444444444444444444442222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|11314_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1174-20130828|11319_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|11317_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 578.35
//
Query:       MMETSP1174-20130828|11320_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 543.48
//
Query:       MMETSP1174-20130828|11323_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 380.44
//
Query:       MMETSP1174-20130828|11318_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-26   90.3   0.0    4.5e-25   85.9   0.0    2.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.7e-19   67.1   0.0    8.6e-19   65.5   0.0    1.7  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    8.5e-12   41.4   0.0    3.3e-05   19.6   0.0    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    4.6e-09   32.9   0.0      8e-05   18.9   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    0.00099   15.7   0.0      0.007   12.9   0.0    2.0  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0013   15.7   0.0       0.36    7.6   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0054   12.9   0.0     0.0078   12.4   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   7.7e-28   4.5e-25      16     414 ..      31     469 ..      25     484 .. 0.74

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 7.7e-28
    TIGR01389  16 ggqeeiieevldgrdvlavlPtGGGkslCYqvPaLl.........lkgltvvisPLisLmkDqvdqLraaGv...........e.....aaalnstlsakeaqeilkalaagelklL....YvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefvssfdRenlafsvvkke..........nkkkqlleylkke...reksGiiYassRkkveelaeaLe.....skgieala.YhaGlskkvRaeaqekFleddvkvvvatva.FGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayaetkkCrrklllkyFgee..eveeCgnCdnCldpakavdatveaqkilscvkR 414
                  ++q + ++++ld++ v+  + tGGGk l   +  Ll          +  t+v sP ++L+ D     ++ G+           +     a+  ns+   +   e +++  ++ + +L    +   e    ++ +e ++++   ++ +Dea    +    +Rp  + lg +  ++ ++p +    t +++   + ++  ++  a+ + + +dRenl f+    +           k++  l+++ ++   +++  +i+  s ++v+++ ++L      skg +++  +h+ +++++++e++e F   +++v+vat a F  G+d ++vR v  l +P+++e+++  aGRaGRDG+ka   l  s +++   ++ ++es    +++ i       l +y  + +Cr k  l y g      e+Cg+Cd C +++++++++++ + +l +v+ 
  MMETSP1174-20130828|11318_1  31 SHQLTAVRKLLDDKTVIQRVRTGGGKTLVAILMILLpiefpdkysAPQSTLVFSPTVALLLDTKRRFENYGIlcwgsssremaNphcggASSSNSAFVLNAPDETTSTEITAAVAILvtieFWDGESRAAQSAREKIADSASIFIWIDEAITAIRTKDTYRPAQEGLGDIPRIYIDSPCLLSDGTWTENLVIEGRSFFKVPLAEVVQTPVDRENLKFRRLTANswseaklcvyTKTNSFLRFIARDplrHQHQSLIFVRSLNDVDDVVAFLWekfpgSKGSNTIRgFHGQMDDEIKQETLELFGSLKTRVLVATLAsFAAGMDYPNVRAVYLLSIPESVEQFWNAAGRAGRDGEKAVVYLYASVRNM---AKALAESGDAYSTRII-------LRSYGVSISCRLKETLGYIGGFssASEKCGHCDLC-QNRSEFEVSISIHNLLTSVQN 469
                  567788889999999999999999998876554444222222222356789999999999999988888888444444333220222224555665554444444444444444444211166788889999999*********************************************9************************************86554311111111113455566667654332457789**************996222235678777559***************************987**************************************976655555544...4455554433333333.......5679999***********997544789********.577889999999999988864 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.5e-21   8.6e-19      11     423 ..      28     468 ..      23     493 .. 0.72

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.5e-21
    TIGR00614  11 sfrpvqlevinavlegrdalvvmatGgGksLC........yqlpavv.sdgltlvisPLisLmeDqvlqLkasdi..........satlLnsaqskeeakevladl...kdgklk...llYvtPekvsksksllqkle...erkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekks......kiledllkfiv......kefkgksGiiYClsrkkveqvaaeLqkk......glaaaaYhagleesarkevqkkflrdeiqvvvatva.fGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllekvekyensskCRRlillsyfeekqlkkasskkgteksCdnCkkrldyktkdvedkvkdlikqaq 423
                  + ++ ql ++   l ++ ++  + tGgGk L           +p  +  ++ tlv sP ++L+ D   + ++ +i          +    ++a+s++ ++ vl+      ++++     + vt e+   + +  q+     +++  ++i +Dea    +    +R++ + lg + + + + p +    t ++++  +  +  k+  ++v+ t  dR+nlk++    +s       + ++ + f++       +++ +s +i+  s ++v++v a L +k      + + + +h  ++++ ++e  + f   + +v+vat+a f  G++ p+vR v   s+p s+e+++  +GRaGRDg+k+     y +a v  + + l e  d     y++++   +  y  s  CR +  l y +   +  as   ++   Cd C++r++++   v+ + ++l++ +q
  MMETSP1174-20130828|11318_1  28 KLHSHQLTAVRKLLDDKTVIQRVRTGGGKTLVailmillpIEFPDKYsAPQSTLVFSPTVALLLDTKRRFENYGIlcwgsssremANPHCGGASSSN-SAFVLNAPdetTSTEITaavAILVTIEFWDGESRAAQSARekiADSASIFIWIDEAITAIRTKDTYRPAQEGLGDIPRIYIDSPCLLSDGTWTENLVIEGRSFFKVPLAEVVQTPVDRENLKFRRLTANSwseaklCVYTKTNSFLRfiardpLRHQHQS-LIFVRSLNDVDDVVAFLWEKfpgskgSNTIRGFHGQMDDEIKQETLELFGSLKTRVLVATLAsFAAGMDYPNVRAVYLLSIPESVEQFWNAAGRAGRDGEKAVV---YLYASVRNMAKALAESGDA----YSTRI--ILRSYGVSISCRLKETLGYIGG--FSSAS---EKCGHCDLCQNRSEFE---VSISIHNLLTSVQ 468
                  5677899999999999999999999999998622221111234444414678999999999999999999999983332221111111223333333.3333332222233333211146677777766666666554455667788999*****99999999********************9999999999999999*********************98776665434433233444444447779998999999.***************99654332221345689****************************988*************************************9865...5556677777888887777....33333..4677888999**********99..42222...2334577777777765...3344444444444 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.6e-08   3.3e-05      13      83 ..      28      98 ..      20     101 .. 0.94
   2 !   19.6   0.0   5.6e-08   3.3e-05     245     350 ..     278     385 ..     269     396 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5.6e-08
    TIGR04121 13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdierale 83
                 +++++Q  +++++ +++  +  + TG+GKTl + l +l+ ++  +k +++  +l  +P  aL  d++r  e
  MMETSP1174-20130828|11318_1 28 KLHSHQLTAVRKLLDDKTVIQRVRTGGGKTLVAILMILLPIEFPDKYSAPQSTLVFSPTVALLLDTKRRFE 98
                 5689**************************************************************99765 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 5.6e-08
    TIGR04121 245 ikkarttlvFtNtRsqaEllfqaLleaneelal..eialhHgsldkeqRekveaalkagklravvcT.ssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldep 350
                  +++++++l+F+   +  + +   L+e+ +  ++  +i  +Hg +d+e +++  + + + k r++v+T +s+  G+D+ +v  v  +  p +v  +   +GR++   +e+
  MMETSP1174-20130828|11318_1 278 LRHQHQSLIFVRSLNDVDDVVAFLWEKFPGSKGsnTIRGFHGQMDDEIKQETLELFGSLKTRVLVATlASFAAGMDYPNVRAVYLLSIPESVEQFWNAAGRAGRD-GEK 385
                  6788999********************9987761156669***************************89********************************9843.444 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.6e-05    0.0095      21     102 ..      11      98 ..       3     133 .. 0.84
   2 !   18.9   0.0   1.4e-07     8e-05     333     388 ..     342     397 ..     275     412 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
    TIGR03817  21 vepdvvaaleaaG..ieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed....pratalylaPtkalaadqlravk 102
                  +e+d+ +al+++G  i++ ++hq++a     + + v+    t  Gk+l   l +l  ++         ++l ++Pt al  d  r  +
  MMETSP1174-20130828|11318_1  11 LEKDCLEALRRRGstITKLHSHQLTAVRKLLDDKTVIQRVRTGGGKTLVAILMILLPIEFPdkysAPQSTLVFSPTVALLLDTKRRFE 98 
                  67899999999987799*******************************9988888877654344445678999*******99988766 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.4e-07
    TIGR03817 333 vaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPl 388
                  va+  ++  G+d   + av +   P  v  +w  aGraGr+g++a+v l a+   +
  MMETSP1174-20130828|11318_1 342 VATLASFAAGMDYPNVRAVYLLSIPESVEQFWNAAGRAGRDGEKAVVYLYASVRNM 397
                  566677889****************************************9976655 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.1        60     265     281 ..      52      68 ..      27      81 .. 0.84
   2 !   12.9   0.0   1.2e-05     0.007     473     563 ..     302     392 ..     260     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.1
    TIGR00643 265 VGsGKTvVavlallavi 281
                   G GKT+Va+l +l  i
  MMETSP1174-20130828|11318_1  52 TGGGKTLVAILMILLPI 68 
                  489********998665 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.2e-05
    TIGR00643 473 leelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtv.iEvGvdvPnat.vmviedaeRfGlsqLHQLRGRvgRgekksyclLva 563
                  +e+   + ++ ++  +hg++ ++ k+e le F + ++ +LvaT      G+d Pn+  v ++  +e   + q     GR gR  +k+++ L a
  MMETSP1174-20130828|11318_1 302 WEKFPGSKGSNTIRGFHGQMDDEIKQETLELFGSLKTRVLVATLAsFAAGMDYPNVRaVYLLSIPES--VEQFWNAAGRAGRDGEKAVVYLYA 392
                  5555555566677779***************************643899******862556666774..689999999999999999888876 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00061      0.36       8      87 ..      28     107 ..      23     118 .. 0.77
   2 !    5.9   0.0     0.002       1.2     314     383 ..     312     382 ..     288     404 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00061
    TIGR04095   8 elrdyqkeaikaWfknngrGilkmatGtGktltaLalvskl....aekikslvvvvvvPykhLveqWakeaekFglepilayes 87 
                  +l+++q  a+++ ++++   i ++ tG Gktl a+ ++       ++ + ++ ++v  P   L+    +  e++g   il+++s
  MMETSP1174-20130828|11318_1  28 KLHSHQLTAVRKLLDDK-TVIQRVRTGGGKTLVAILMILLPiefpDKYSAPQSTLVFSPTVALLLDTKRRFENYG---ILCWGS 107
                  67899*******98776.57999**********987765434667888899999999999888877666666665...455555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.002
    TIGR04095 314 lrvktftaeeskeeReellkqfesgelqalva.irCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                   +++ f  + + e ++e l+ f s +  +lva +     G+D P++r  y+L+  +   qF    GR  R 
  MMETSP1174-20130828|11318_1 312 NTIRGFHGQMDDEIKQETLELFGSLKTRVLVAtLASFAAGMDYPNVRAVYLLSIPESVEQFWNAAGRAGRD 382
                  56777888888999999999999999999998467899***********************9999997765 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.3e-05    0.0078     689     766 ..     316     393 ..     272     405 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
    TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcT.tiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvp 766
                    Hgqm++e  +e+++ F + ++ vLv+T +   +G+d pn+  + +    +  + q +   GR GR  +ka  yl   
  MMETSP1174-20130828|11318_1 316 GFHGQMDDEIKQETLELFGSLKTRVLVATlASFAAGMDYPNVRAVYLLSIPE-SVEQFWNAAGRAGRDGEKAVVYLYAS 393
                  57***************************55689*********998887766.599****************9998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 999.86
//
Query:       MMETSP1174-20130828|11325_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1174-20130828|11326_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 755.27
//
Query:       MMETSP1174-20130828|11328_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1826.73
//
Query:       MMETSP1174-20130828|11333_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 335.97
//
Query:       MMETSP1174-20130828|11336_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 801.14
//
Query:       MMETSP1174-20130828|11329_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   16.3   0.1    0.00092   15.7   0.1    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
      0.041   10.2   0.0      0.058    9.7   0.0    1.1  1  TIGR01059 gyrB: DNA gyrase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.5e-07   0.00092     274     303 ..     332     361 ..     314     373 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.5e-07
    TIGR01982 274 rdgfFHaDlHpGNilvakdgkiialDfGiv 303
                   ++f   D H+GNil++++g++i +DfG +
  MMETSP1174-20130828|11329_1 332 CYAFAIKDRHNGNILLDTNGHLIHIDFGFI 361
                  5566667*********************76 PP

>> TIGR01059  gyrB: DNA gyrase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   2.8e-05     0.058     526     629 ..      38     198 ..      32     202 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.8e-05
    TIGR01059 526 iaqpPlykvkkgkkdkelv...................kalylysdkekeeaksqle.........................................................skkaeleiqrykGlGemnaeqlWettmdpesrtlkkvkiedaaeadkiftvlmGdeveprrefiea 629
                  +a pPl  vk+  + ++l+                                     +                                                         sk +el++   +  G++n ++l +t md+++r   +v+i+ a+e + +++v  G++ e++++ i++
  MMETSP1174-20130828|11329_1  38 LAVPPLIEVKRMVQTQALRsrlyignlgdedvdhlnsrW-----------------HddrgssirmsrtpsapmlnsldkskkqrrdssssergysesdgdrghsdgdldsnepSKAVELALE-LRKNGQINDQEL-KTLMDKDRRFQSQVEINAAEEEQFLLSVAFGESWETKKARIKS 198
                  678888888888776666622223322222222222220.................1223333333333344444444444444444445566677777777777777777754444455554.455799999988.79*********************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.59
# Mc/sec: 1096.18
//
Query:       MMETSP1174-20130828|11330_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.43    6.0  44.1       0.82    5.1  30.0    1.6  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  30.0    0.0002      0.82     212     463 ..      50     297 ..      36     361 .. 0.40

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0002
    TIGR02168 212 Aekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsev.aeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                  A+++ e+++++ e++ al v++ ee+ ++ +++++ ++ ++++  el++ l + ++ l+e +++++++ +++ + qk+ ++ +aei+rl+qe +  +e+ ++++k le+  + ++ l +  e  eee +e++    +l +++e l+ + + ++++ ++ e+++e++++ + ++++e  +e+ ++ ++++++++ +e++  ++ + ++  ++++e+ +k+l e+ + ++++++  ++ e+ l+++  + ++ + 
  MMETSP1174-20130828|11330_1  50 ATRLLEKRRQMFEVQEALDVQK-EEFARREDAFRRREETLRKKDLELQESLIKFNKFLQENESKRNRALKRASDEQKNREQKEAEIARLKQEYRLKQEEDQAVKKGLEMHVKYRDYLTNVFEGVEEEYNEIQ----DLLNRFETLKHANSDLAKAHRDNEQKNESQRQLFGNFKKECqNEILNRTNDIAKKQKLYEQKTGDVLRLQNIVDSSVESSSKELLELGQVIRTVRNLHDRIETRLQNTGRSSKNSND 297
                  4444555555555554444433.3333333444444444444444455555555555555555555555555555555555555555555555555555444444444444333333333333333333333....333333333333333333344444444444444444444321233444444444444444444444444444444444443333333333333333333333333222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.63
# Mc/sec: 773.08
//
Query:       MMETSP1174-20130828|11337_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1190.26
//
Query:       MMETSP1174-20130828|11331_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 518.53
//
Query:       MMETSP1174-20130828|11339_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    6.4  45.6    0.00091   14.9  22.0    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        9.2    1.5  44.7       0.13    7.7  23.6    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9  22.0   4.5e-07   0.00091     682     919 ..       7     228 ..       1     250 [. 0.47
   2 ?   -2.4   4.1     0.072   1.5e+02     769     846 ..     316     390 ..     276     416 .. 0.37

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.5e-07
    TIGR02168 682 eeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelerel 919
                  ++l  +i +++e+++  e   ke+ +++ee           + el++ +++++ el+ ++k+ e++++ ++ +++++ +le+++e l++e + ++  l+   +++e+lea++e +k+ +   +++l+e+e e+++l+++  ++ + +  l +++++l++e   +ee i +lee+i s+  e+e+ ++ + +  + l++++ + ++le+   +lr++l+e+++ +       ++ +r+l
  MMETSP1174-20130828|11339_1   7 KQLALKISKMQEDARHNELSFKEVLNQQEEEY---------EMELKQLMEAAHVELSLERKNTERMRRAVEARSNKIGQLEKRMEVLRTESHIKDVILSSDIAKKEKLEATLEHFKRHIMIRQANLEEKEVEINSLRQKNLTLDNFRFVLDHRVQDLKEERGPIEEHIHSLEEHIDSMYTELEKENKLKMKTDQVLDAKDMKLRTLEAVKLKLRAQLREKEAYI-------SAFQRDL 228
                  22233333333333333333333222222211.........223344445555555555555555555555566666666666666666666666666666666666666666666666666666666666666666666655555555555555555555555555555555555555555554444333333333333333333333333333333333333.......3333322 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.072
    TIGR02168 769 eeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleele 846
                  ++  +e+e +l+ea +++e +e+ +++++ ++k ++++ ++ +++   +++++ +   +++ l++e  al +++++l+
  MMETSP1174-20130828|11339_1 316 DSSDNETELALQEAFKQRECVERLAKTMTHKVKMTNKSSRSSHNKQLLENTSLID---ECNVLRRENLALIRNVDRLN 390
                  1112222222233333333333333333333332222222222222222222221...22222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  23.6   6.2e-05      0.13     737     963 ..       3     230 ..       1     250 [. 0.71
   2 ?   -0.5   2.0     0.019        39     345     426 ..     315     396 ..     264     412 .. 0.48

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 6.2e-05
    TIGR02169 737 kerleeleeklseleeeleekkeelke.leaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeeeepeeelslekvkkelek 963
                  k++ ++l+ k+s+++e+   ++ + ke l+++ ee+e +l++l ea +++e +l++++ e++++ +e+  +++ ++e+r+e +  e + +++   +   ++++l++  e+++ ++  +++++ee + ++++l+++   l +    L+++ +dLk+er  +e++++ le++++ + +e+ek++k   ++ + l+a+  +l +le+ + k   +  e+e+ +   ++ l k
  MMETSP1174-20130828|11339_1   3 KQQEKQLALKISKMQEDARHNELSFKEvLNQQEEEYEMELKQLMEA-AHVELSLERKNTERMRRAVEARSNKIGQLEKRMEVLRTESHIKDVILSSDIAKKEKLEATLEHFKRHIMIRQANLEEKEVEINSLRQKNLTLDNFRFVLDHRVQDLKEERGPIEEHIHSLEEHIDSMYTELEKENKLKMKTDQVLDAKDMKLRTLEAVKlKLRAQLREKEAYISAFQRDLSK 230
                  6677788888888877666655555541566667777777777655.56777777777777777777777777777777765544444444333333444556777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888876655555555555555555555544 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.019
    TIGR02169 345 eieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelael 426
                  e  + +    +l+e++k+++ +++  +    +v+ +++ +r  ++++  +  +l +e n l+re+  l+ +  rl++ + +l
  MMETSP1174-20130828|11339_1 315 EDSSDNETELALQEAFKQRECVERLAKTMTHKVKMTNKSSRSSHNKQLLENTSLIDECNVLRRENLALIRNVDRLNQVIYRL 396
                  2223333334445555555555444444445555555555555544444444555555555555444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       511  (0.124573); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 1152.15
//
Query:       MMETSP1174-20130828|11341_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 538.11
//
Query:       MMETSP1174-20130828|11346_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 856.24
//
Query:       MMETSP1174-20130828|11345_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 720.28
//
Query:       MMETSP1174-20130828|11352_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 590.07
//
Query:       MMETSP1174-20130828|11350_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-46  156.1   0.0    3.7e-46  155.6   0.0    1.2  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    7.1e-20   69.4   0.0    9.6e-20   69.0   0.0    1.2  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    1.3e-14   51.8   0.0    1.5e-10   38.5   0.0    2.3  2  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
    8.6e-08   29.8   0.0    1.2e-07   29.4   0.0    1.1  1  TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
    4.3e-07   27.3   0.3    4.7e-06   23.9   0.0    2.0  2  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
    1.8e-05   22.1   0.1    3.6e-05   21.1   0.0    1.5  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    7.1e-05   19.2   0.0    0.00011   18.5   0.0    1.3  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0017   15.5   0.3     0.0027   14.8   0.2    1.2  1  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
     0.0061   13.7   0.2     0.0096   13.0   0.1    1.2  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
     0.0077   13.0   0.1      0.019   11.7   0.0    1.6  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
     0.0096   13.3   0.2      0.022   12.1   0.1    1.5  1  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
     0.0098   13.4   0.1      0.017   12.6   0.0    1.3  1  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.025   11.7   0.0    1.4  1  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
      0.015   12.8   0.0      0.023   12.2   0.0    1.3  1  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   1.3e-48   3.7e-46      15     236 ..       1     230 [.       1     237 [. 0.86

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 1.3e-48
    TIGR00737  15 lagvtdlafRrlvkeyeaglvvsEmvssealv....eksektkkll.....eiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTraql..yeGeanwdiiarvkqavkiPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeie 236
                  + g +dlafR lv++ +a l ++ m+ +++      +++++    l     ++a + +p  +Q +g dp +++eaA   ++   d iDlN+GCP k   k   G+ ll ep l+ +iv++++++ +vP+TvKiR+   +    ++++a +++daGa++v++HgRT  q    + +a+w ++++v++a++iPV++nG i++++dA ++L etgad v+ + + l +P lf++ +
  MMETSP1174-20130828|11350_1   1 MVGQSDLAFRLLVRRHGADLAFTQMLHAKNFAtvprYREDNFDGFLrddqsTYAMEDRPLIAQFCGNDPGTVVEAASYIQD-HVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTK--EETVQFACMLQDAGAAMVTVHGRTVKQNknLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNT 230
                  7899***********************9998622223445555555111114556778999****************5544.4799********877777789*******************************96555..45789*******************9986337899******************************************************9865 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.3e-22   9.6e-20      46     235 ..      49     228 ..       1     248 [. 0.85

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 3.3e-22
    TIGR00742  46 kllkfseeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksleeikkhlsf..vdsvmvGreayenPyllaa 235
                  +   +  e++P+  q+ g+dp ++ ++a   +++  d i+ln+GcP +  ++g +Ga l++++ lv  iv+ m  + ++P+tvk r+    l + ee v+f  +++d+G  + +vh r         k+n+++ +     v +  ++   + +  nGGi+++ ++ + l     d vm   +  enP+l+ +
  MMETSP1174-20130828|11350_1  49 DQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDH-VDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRM----LPTKEETVQFACMLQDAGAAMVTVHGRT-------VKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVEtgADMVMSSEALLENPGLFQQ 228
                  455688999********************99985.7************************************************776....6677899999***************996.......59******99999999999***9*************9999999762268888899999*****976 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   5.1e-13   1.5e-10      77     188 ..      44     158 ..      38     173 .. 0.86
   2 !   11.2   0.0   0.00011     0.031     225     274 ..     177     227 ..     167     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 5.1e-13
    TIGR01037  77 efleelkkvreevdtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPh..vkg..aGieiGqdpelsaevvkavkekvdkPvlakLs..PnvtdivelakaveeaGaDgltl 188
                   fl++ +++    d++lia+  G+++   +e+a+ ++   ++vda++Ln+ CP+  +k+  +G+ +  +p l+ ++v+++    d+P+++k+   P  ++ v++a  +++aGa  +t+
  MMETSP1174-20130828|11350_1  44 GFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQ---DHVDAIDLNLGCPQkiAKKgrYGAFLLSEPVLVRSIVERMATSLDVPITVKIRmlPTKEETVQFACMLQDAGAAMVTV 158
                  5666666666666788********************9...67***********844444579***************************9964449*****************98887 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
    TIGR01037 225 vvydlykkldiPiiGvGGitsaeDalefll.aGasavqvGtavyyegkvfk 274
                  vv  + + l iP++  GGi+++ Dal  l+  Ga  v    a + ++ +f+
  MMETSP1174-20130828|11350_1 177 VVRAVREALTIPVVANGGIETTSDALRCLVeTGADMVMSSEALLENPGLFQ 227
                  5667889999****************9987468888877777666666665 PP

>> TIGR00736  nifR3_rel_arch: putative TIM-barrel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.1e-10   1.2e-07      86     226 ..      76     222 ..      64     227 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.1e-10
    TIGR00736  86 elsvaesadiieinahCrqPeiteiGiGqellknkelLkefvakvk.karkpvfvkirgnvikldevkvarklvdagvdai..hvdalkPGe...dradlelvklvsevkndkiviGnnsvddiesa.kellkagadlvsvaravlkg 226
                  +  + +++d i++n  C q    +   G  ll ++ l++ +v ++   +  p+ vkir   +k ++v+ a  l dag  ++  h  ++k  +   +rad ++v+ v e      v+ n  ++    a + l+  gad+v  + a+l++
  MMETSP1174-20130828|11350_1  76 ASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMAtSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVtvHGRTVKQNKnlsERADWSVVRAVREALT-IPVVANGGIETTSDAlRCLVETGADMVMSSEALLEN 222
                  556789*************76666668******************97999*********9999************9976651155566655422269*********99998.66899****9998883556789*****999998876 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0036         1      63     118 ..     114     174 ..     108     175 .. 0.76
   2 !   23.9   0.0   1.6e-08   4.7e-06      31     118 ..     140     231 ..     131     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0036
    TIGR00735  63 levvervaekvfiPltvgGGiksiedvk.....kllraGadkvsintaavkapelikelad 118
                   ++ver+a ++++P+tv   +   ++ +      l  aGa  v++    vk+ + ++e ad
  MMETSP1174-20130828|11350_1 114 RSIVERMATSLDVPITVKIRMLPTKEETvqfacMLQDAGAAMVTVHGRTVKQNKNLSERAD 174
                  679**************865532222223455455679*************9999998876 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1.6e-08
    TIGR00735  31 dpvelakkydeeGadelvflditasse...kretmlevvervaekvfiPltvgGGiksiedvk.kllraGadkvsintaavkapelikelad 118
                  + v++a   ++ Ga  ++    t  ++   +++ + +vv+ v e + iP++  GGi++ +d+   l+++Gad v    a +++p l+++ +d
  MMETSP1174-20130828|11350_1 140 ETVQFACMLQDAGAAMVTVHGRTVKQNknlSERADWSVVRAVREALTIPVVANGGIETTSDALrCLVETGADMVMSSEALLENPGLFQQNTD 231
                  689999999*********9999998885555688999**********************998615779******999999999999988776 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.6   1.3e+03      64      79 ..     115     130 ..     113     133 .. 0.82
   2 !   21.1   0.0   1.2e-07   3.6e-05      61     115 ..     173     228 ..     137     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.6
    TIGR03572  64 elieklaeevfvPltv 79 
                   ++e++a+++ vP+tv
  MMETSP1174-20130828|11350_1 115 SIVERMATSLDVPITV 130
                  5788999999999987 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.2e-07
    TIGR03572  61 kllelieklaeevfvPltvgGGiksledv.kkllkaGadKvsintaalenpeliee 115
                   +  +++ + e + +P+ + GGi++  d+ + l+++Gad v+ + a+lenp l ++
  MMETSP1174-20130828|11350_1 173 ADWSVVRAVREALTIPVVANGGIETTSDAlRCLVETGADMVMSSEALLENPGLFQQ 228
                  45567777777777888888888777665255777788877777777777777765 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-07   0.00011     274     330 ..     176     232 ..     133     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.9e-07
    TIGR03997 274 elaaaireavdlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPelaakakeg 330
                   +  a+rea+ +Pvva G i++ + a r l e  ad+v    a++ +P l ++ ++ 
  MMETSP1174-20130828|11350_1 176 SVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDH 232
                  45678*************************9999**************998876654 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   9.2e-06    0.0027     110     211 ..     108     214 ..      97     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.2e-06
    TIGR01304 110 aaPlkeellgkriaevrdaGvitavrlsPqn..asklakvvveaGvdllviqgtvvsaehvsssgealnlkkli.seldvPvvv.Ggvvdyetalh.lmrtGaagvl 211
                  ++P+    + +r+a   d   ++ +r+ P +  + ++a ++ +aG+ ++ ++g +v  ++  s+     +++ + + l +Pvv+ Gg+ +   al+ l+ tGa  v+
  MMETSP1174-20130828|11350_1 108 SEPVLVRSIVERMATSLDVPITVKIRMLPTKeeTVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVrEALTIPVVAnGGIETTSDALRcLVETGADMVM 214
                  5666667777888888888888999998865227799****************9999888777666666666651569****9868899999999747789998776 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.3e-05    0.0096     118     178 ..     141     203 ..     128     219 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
    TIGR03151 118 svalakrleklGadaviaeGm..eaGGhiGelttlalvpqvvdavsiPviaaGGiadgrGlaa 178
                  +v +a +l+ +Ga  v + G   +    + e +  ++v+ v +a++iPv+a GGi     ++ 
  MMETSP1174-20130828|11350_1 141 TVQFACMLQDAGAAMVTVHGRtvKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALR 203
                  67889999999999999999611456789999***********************87665554 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.9e+02     173     213 ..     117     160 ..     112     162 .. 0.64
   2 !   11.7   0.0   6.4e-05     0.019     251     294 ..     178     222 ..     161     232 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.3
    TIGR02151 173 iaeiasavsvPvivKEvGfGlskevak...eladagvkaidvaG 213
                  ++++a +++vP+ vK       +e+++   +l+dag++++ v G
  MMETSP1174-20130828|11350_1 117 VERMATSLDVPITVKIRMLPTKEETVQfacMLQDAGAAMVTVHG 160
                  57788899999999966655555554322256666666666665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 6.4e-05
    TIGR02151 251 levrsaakkleliasGGlrsgldvakala.LGAdlvglarplLka 294
                  +++ ++a +++++a GG+++  d++++l+  GAd+v +++ lL++
  MMETSP1174-20130828|11350_1 178 VRAVREALTIPVVANGGIETTSDALRCLVeTGADMVMSSEALLEN 222
                  4444456799*****************9648********999986 PP

>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   7.4e-05     0.022      26     101 ..     148     221 ..     139     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.4e-05
    TIGR00343  26 aeeaGavavmalervpadiraaGgvarmsdpklikeildavsipvmakvriGhivea.qvlealevdyidesevltp 101
                   ++aGa+ v    r    +++  +++  +d ++++ + +a++ipv+a   i  + +a + l + + d++  se l +
  MMETSP1174-20130828|11350_1 148 LQDAGAAMVTVHGR---TVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDAlRCLVETGADMVMSSEALLE 221
                  55666666655544...467778889999*************************9996789999********99865 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.7e-05     0.017     115     186 ..     141     216 ..     113     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.7e-05
    TIGR03128 115 kakrakelkelGvdiiavHtGlDeqakgkkpledLetllkvvkevkv.avA.GGik..ldtikeviklgadvvivG 186
                   ++ a  l+ +G+ +++vH  + +q+k+ +  +d + +  v++++ +  vA GGi+  +d+++ ++++gad+v+  
  MMETSP1174-20130828|11350_1 141 TVQFACMLQDAGAAMVTVHGRTVKQNKNLSERADWSVVRAVREALTIpVVAnGGIEttSDALRCLVETGADMVMSS 216
                  445677899***************************9999999999986665999622578999999999999765 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.4e-05     0.025     133     186 ..     168     221 ..     138     231 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.4e-05
    TIGR00693 133 kdkkavvglelleeiaakaleipvvaIGGitl..enveevlkagvdgvavvsaima 186
                  +  ++ ++ +++++++++  +ipvva GGi++  + ++ ++++g+d v   +a+++
  MMETSP1174-20130828|11350_1 168 N-LSERADWSVVRAVREAL-TIPVVANGGIETtsDALRCLVETGADMVMSSEALLE 221
                  3.35666789999999777.5*********862267999*******9987777665 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.8e-05     0.023      57     183 ..     171     301 ..     136     325 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.8e-05
    TIGR00007  57 ekknlevikkiveelevkvqvGGGiRsleavek.llelgverviigtaavenpelvkellkelg....sekivvslDakegevavkGWkekselslvelakkleelgleeiilTdiekdGtlsGvnveltke 183
                  e+ + +v++ + e+l+++v   GGi +++++ + l+e+g++ v+ + a +enp l+++  ++ +    se  ++   + ++e+  + W e + + +++ +  ++e+ + ++++   ++ Gt++G+ ++++ +
  MMETSP1174-20130828|11350_1 171 ERADWSVVRAVREALTIPVVANGGIETTSDALRcLVETGADMVMSSEALLENPGLFQQNTDHSQdlvgSEGGALNGGTSRSEMDYSEWCEAQLV-AARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYR 301
                  4456789999999999999999999988776551567777777777777899999988776654000023333333344446666666666633.3344445555556666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 972.55
//
Query:       MMETSP1174-20130828|11357_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1084.20
//
Query:       MMETSP1174-20130828|11362_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 1233.59
//
Query:       MMETSP1174-20130828|11363_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 427.83
//
Query:       MMETSP1174-20130828|11365_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-13   47.7   0.5    2.3e-13   47.4   0.3    1.1  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
      2e-06   25.5   0.2    2.9e-06   25.0   0.1    1.2  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    7.3e-06   22.6   0.0    8.9e-06   22.3   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    4.3e-05   20.5   0.1    5.8e-05   20.1   0.1    1.1  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
    0.00011   18.9   0.0    0.00014   18.5   0.0    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00017   18.6   0.1    0.00022   18.3   0.0    1.1  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00025   17.4   0.1    0.00033   17.0   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00054   15.7   0.0    0.00057   15.6   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0006   16.5   0.1    0.00073   16.3   0.0    1.1  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    0.00091   16.2   0.2     0.0013   15.8   0.1    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0022   14.0   0.0     0.0028   13.7   0.0    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
     0.0022   14.7   0.0     0.0031   14.2   0.0    1.1  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0031   14.2   0.1     0.0039   13.9   0.1    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0032   13.8   0.1     0.0039   13.6   0.1    1.1  1  TIGR02061 aprA: adenylylsulfate reductase, alpha subunit
     0.0032   14.1   0.2     0.0043   13.7   0.2    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0039   14.1   0.1     0.0052   13.6   0.1    1.1  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0044   13.7   0.1     0.0056   13.4   0.1    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0057   13.7   0.1     0.0069   13.4   0.0    1.1  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.007   13.3   0.2     0.0092   12.9   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0082   13.3   0.1      0.011   12.8   0.1    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
  ------ inclusion threshold ------
      0.011   12.6   0.1      0.016   12.0   0.1    1.2  1  TIGR02053 MerA: mercuric reductase
      0.011   12.4   0.0      0.013   12.1   0.0    1.1  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.015   11.6   0.1      0.019   11.2   0.1    1.1  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.022   11.8   0.0      0.035   11.1   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.025   11.2   0.0      0.033   10.8   0.0    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.034   10.7   0.1      0.043   10.4   0.0    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.3   1.5e-15   2.3e-13       1      52 [.      58     109 ..      58     115 .. 0.96

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.5e-15
    TIGR03377   1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasGttgRnhGLLhsGaRYa 52 
                  dv++iGGGatG+G + D  +Rglk+ L+e++d +s t++R   L+ +G RY+
  MMETSP1174-20130828|11365_1  58 DVLIIGGGATGSGAALDAQMRGLKTALVERADFSSETSSRSTKLIWAGIRYI 109
                  79*************************************************7 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.8e-08   2.9e-06       1      36 [.      57      92 ..      57      96 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.8e-08
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                 +Dv+++G+G  Gs aAl+++  Gl+++l+e+++++ 
  MMETSP1174-20130828|11365_1 57 FDVLIIGGGATGSGAALDAQMRGLKTALVERADFSS 92
                 7*******************************9975 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.6e-08   8.9e-06     207     242 ..      51      86 ..      19      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.6e-08
    TIGR03140 207 eeekekydvlvvGgGPagaaaaiyaarkGlkvalva 242
                  ++  e++dvl++GgG  g+ aa+ a  +Glk+alv 
  MMETSP1174-20130828|11365_1  51 KKPGEEFDVLIIGGGATGSGAALDAQMRGLKTALVE 86 
                  455689***************************995 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.7e-07   5.8e-05       1      42 [.      57      98 ..      57     104 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.7e-07
    TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGs 42
                 fDv+iiGgG  G  +al ++ +G kta++ +   + + ss s
  MMETSP1174-20130828|11365_1 57 FDVLIIGGGATGSGAALDAQMRGLKTALVERADFSSETSSRS 98
                 9****************************9987776666666 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.1e-07   0.00014       1      34 [.      56      89 ..      56      92 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 9.1e-07
    TIGR01350  1 eydvvviGgGpgGYvaAiraaqlglkvalvekek 34
                 e+dv++iGgG  G  aA  a   glk+alve+ +
  MMETSP1174-20130828|11365_1 56 EFDVLIIGGGATGSGAALDAQMRGLKTALVERAD 89
                 69*****************************975 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06   0.00022       2      41 ..      58      97 ..      57     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvr 41
                 dv+++G+G  G   Al a+ rGlk +++er++     s r
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRGLKTALVERADFSSETSSR 97
                 9*****************************9988877766 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06   0.00033     365     412 ..      43      89 ..      31      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.1e-06
    TIGR03997 365 relkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtlleree 412
                  re  + + lkk++++  vl++GgG +G  aa  a +rG +  l+er++
  MMETSP1174-20130828|11365_1  43 RE-DQLARLKKPGEEFDVLIIGGGATGSGAALDAQMRGLKTALVERAD 89 
                  45.667899************************************986 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.6e-06   0.00057     168     200 ..      56      88 ..      25     122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.6e-06
    TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvdeq 200
                    DvL++G+G++G  aA+ A   G++  lv+  
  MMETSP1174-20130828|11365_1  56 EFDVLIIGGGATGSGAALDAQMRGLKTALVERA 88 
                  56***************************9854 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.6e-06   0.00073       2      37 ..      58      93 ..      57     120 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4.6e-06
    TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggq 37
                 dv+iiG+G++G  aa+ a++ +lkt+l+e+++  ++
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRGLKTALVERADFSSE 93
                 89***************************9987765 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     8e-06    0.0013       1      38 [.      59      96 ..      59     103 .. 0.95

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 8e-06
    TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38
                 vl+iGgG  G+  A+ ++ rg k++l+e++++ s++s+
  MMETSP1174-20130828|11365_1 59 VLIIGGGATGSGAALDAQMRGLKTALVERADFSSETSS 96
                 79*****************************9999996 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.8e-05    0.0028       2      33 ..      56      87 ..      55      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.8e-05
    TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavvtk 33
                 +fdv+++G+G +G  aal++  +glkta v +
  MMETSP1174-20130828|11365_1 56 EFDVLIIGGGATGSGAALDAQMRGLKTALVER 87
                 7***************************9975 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-05    0.0031       1      31 [.      58      88 ..      58      96 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-05
    TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliiekg 31
                 dv+iiG+G +G  aa++a+ +gl++ ++e+ 
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRGLKTALVERA 88
                 89***************************97 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.5e-05    0.0039       1      39 [.      58      95 ..      58     111 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
    TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaaekaks 39
                 d++I+GgG +G+  Al  + ++ lk+alve+++ ++++s
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRG-LKTALVERADFSSETS 95
                 9****************99655.********99876444 PP

>> TIGR02061  aprA: adenylylsulfate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.5e-05    0.0039       1      38 [.      58      91 ..      58     118 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
    TIGR02061  1 dvlivGgGlggcGaafeaaywgkkkglkivlvekaave 38
                 dvli+GgG +g+Gaa +a    + +glk  lve+a   
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDA----QMRGLKTALVERADFS 91
                 8***************98....5789999*****9864 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   2.7e-05    0.0043       1      30 [.      59      88 ..      59      95 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-05
    TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEkn 30
                 v+iiGgGa G  aA+ a+ +g+k +l+E++
  MMETSP1174-20130828|11365_1 59 VLIIGGGATGSGAALDAQMRGLKTALVERA 88
                 78**************************86 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.3e-05    0.0052       2      32 ..      58      88 ..      57      92 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-05
    TIGR02023  2 dvlviGggpsGaaaaetLakagievillere 32
                 dvl+iGgg++G+ aa   +  g +++l+er+
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRGLKTALVERA 88
                 9****************************97 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.5e-05    0.0056       1      41 [.      58      97 ..      58     106 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-05
    TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssf 41
                 dv+i+Ggg +G+  Al  +  + lk+al+e  + ++++ss+
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRG-LKTALVERADFSSETSSR 97
                 89********************.*********999986655 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.4e-05    0.0069       2      35 ..      56      89 ..      55     108 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.4e-05
    TIGR01421  2 eydylviGGGsGGiasarraaeyGakallveekk 35
                 e+d+l+iGGG+ G  +a  a + G k++lve  +
  MMETSP1174-20130828|11365_1 56 EFDVLIIGGGATGSGAALDAQMRGLKTALVERAD 89
                 79*****************************876 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   5.8e-05    0.0092       1      50 [.      58     106 ..      58     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.8e-05
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypll 50 
                  +v++IG+G  g+ +al  + rG++  l+e++ +  +++S+  + ++ + +
  MMETSP1174-20130828|11365_1  58 DVLIIGGGATGSGAALDAQMRGLKTALVERA-DFSSETSSRSTKLIWAGI 106
                  599***************************9.899999988776666555 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   7.2e-05     0.011       1      31 [.      59      89 ..      59     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.2e-05
    TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31
                 v+++GgG  G  AA+    +G+++ l+E++ 
  MMETSP1174-20130828|11365_1 59 VLIIGGGATGSGAALDAQMRGLKTALVERAD 89
                 89**************************985 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1    0.0001     0.016       1      31 [.      57      87 ..      57      92 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0001
    TIGR02053  1 ydlviiGsGaaafaaaikaaelgakvvlver 31
                 +d++iiG+Ga++  aa+ a+  g k +lver
  MMETSP1174-20130828|11365_1 57 FDVLIIGGGATGSGAALDAQMRGLKTALVER 87
                 599**************************98 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05     0.013      21      81 ..      47     105 ..      29     120 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.4e-05
    TIGR01373  21 awrspepkpeydviivGgGGhGlatayylakehGitnvavlekgwlGgGnvgrnttivrsn 81 
                    r  +p +e+dv+i+GgG  G  +a   a+  G+ + a++e++ + +   +r t ++ + 
  MMETSP1174-20130828|11365_1  47 LARLKKPGEEFDVLIIGGGATGSGAA-LDAQMRGL-KTALVERADFSSETSSRSTKLIWAG 105
                  45677899************998776.46888887.5799999999999999999988665 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012     0.019       1      30 [.      58      87 ..      58      98 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    TIGR01812  1 DvvivGaGlAGlraAveaakkglkvavisk 30
                 Dv+i+G+G  G  aA++a+ +glk+a++ +
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRGLKTALVER 87
                 99************************9975 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022     0.035      21      52 ..      56      87 ..      46      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00022
    TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvler 52
                 e Dv+i+G+G++G  aa     +glk++++er
  MMETSP1174-20130828|11365_1 56 EFDVLIIGGGATGSGAALDAQMRGLKTALVER 87
                 68***************9999999*******9 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021     0.033       1      40 [.      57      96 ..      57     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00021
    TIGR01377  1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGs 40
                 fDv+++G G  Gs aa     rg k+ L+e+ d+  +  s
  MMETSP1174-20130828|11365_1 57 FDVLIIGGGATGSGAALDAQMRGLKTALVERADFSSETSS 96
                 9******************************999766554 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027     0.043       1      33 [.      58      89 ..      58     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00027
    TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKap 33
                 dv+++G G+ G  aal+a+ +g  +  ++e+a+
  MMETSP1174-20130828|11365_1 58 DVLIIGGGATGSGAALDAQMRG-LKTALVERAD 89
                 89********************.5555667766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 570.85
//
Query:       MMETSP1174-20130828|11368_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   30.6   0.0    1.6e-06   25.7   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     4e-10   1.6e-06       7      35 .]       4      32 ..       2      32 .. 0.95
   2 !    3.3   0.0    0.0057        23       1      18 [.      33      50 ..      33      53 .] 0.81

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4e-10
    TIGR00756  7 isglckagrveeAlelfdeMkergivPda 35
                 is++ k g++e+Al l++ M+ +g+ Pd+
  MMETSP1174-20130828|11368_1  4 ISACEKGGQWEKALGLLQAMRQSGVQPDV 32
                 99*************************96 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0057
    TIGR00756  1 vtyntlisglckagrvee 18
                 +++n+ is++   +++ e
  MMETSP1174-20130828|11368_1 33 ISFNAAISACESCRQYGE 50
                 589******988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|11376_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.2   0.0      0.032   11.1   0.0    1.1  1  TIGR00564 trpE_most: anthranilate synthase component I


Domain annotation for each model (and alignments):
>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.8e-06     0.032     209     245 ..      90     126 ..      54     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.8e-06
    TIGR00564 209 aGdifqvvlSqrleakveakpfelYrkLRtvNPSpyl 245
                    +i+q+++  r +  v  +pf + r+  ++NPSpy+
  MMETSP1174-20130828|11376_1  90 GVQIMQGMILDRWNFTVAISPFGYLRAPWNINPSPYV 126
                  4589********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 609.88
//
Query:       MMETSP1174-20130828|11379_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 746.42
//
Query:       MMETSP1174-20130828|11380_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|11378_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 826.00
//
Query:       MMETSP1174-20130828|11381_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 426.14
//
Query:       MMETSP1174-20130828|11382_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 610.45
//
Query:       MMETSP1174-20130828|11384_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 954.98
//
Query:       MMETSP1174-20130828|11386_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|11383_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-35  120.4  21.6    3.7e-35  119.5  15.0    1.4  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    6.4e-20   69.3  21.9    8.4e-20   68.9  15.2    1.0  1  TIGR00893 2A0114: D-galactonate transporter
    7.3e-20   69.2  23.8      2e-19   67.8  16.5    1.8  1  TIGR00712 glpT: glycerol-3-phosphate transporter
      3e-07   27.1   4.5      3e-07   27.1   3.1    2.2  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    3.2e-07   27.4  31.0    1.6e-05   21.8   7.3    2.7  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.8e-05   21.2   6.4    2.8e-05   21.2   4.5    3.3  3  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    0.00058   16.6   1.0    0.00058   16.6   0.7    2.4  2  TIGR00898 2A0119: cation transport protein
  ------ inclusion threshold ------
        0.1    9.0  32.9     0.0069   12.8   9.3    2.2  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5  15.0   7.2e-38   3.7e-35       4     367 ..       3     373 ..       1     390 [. 0.81

  Alignments for each domain:
  == domain 1    score: 119.5 bits;  conditional E-value: 7.2e-38
    TIGR00881   4 ylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss..........slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyv.lknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaan.klvvlillfvlGflvyGpilligvaa....selapkkaiGtaaglvglfaylggilaglplg 367
                  y++   +Rk+++ +  +l    g++   l  + saf+ +Y+ + f+ g++ D  s++ ++aigL+++++v l+++f              + +  + a+ G+fq++g p+++ ++ +w++++ rG+v+++w++ + vg ++++   + ++  +l+w+ ++i+p ++  ++s++ ++ + ++p +   ++++          ++++++e  k  ++++   + n   + ++++  f  ++ +++   +p+ l  +  ++  +++++ +l+ ++ ++G +++Gw+sD +f +rra +  ++m  ++  ++ +  ++ +    + l ll+++G+lv Gp ++i +a+    +e +  ka+Gt +g+++  +++ +++ ++ + 
  MMETSP1174-20130828|11383_1   3 YAMAHWTRKSYTNVKVQLLGV-GVTPYTLAAMDSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSAVLLLMVFGAstsiastaglCAIYFTSIQAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAYILGSSLDWRYAIIIPLVLNGLWSIMNFMCVPNDPSEFEDNNVNSTSGLV---GSANAPDEDDKPIGFCEAFsVPNVAGYALAFG--FFKLINYAMFFQLPFILAAN--FDPATSNIISSLYSFGMMPGGIVCGWVSD-VFGARRACVCAFMMSILMPLMIFFGYFMDSMrVELLLPLLMIMGCLVGGPNNIITSAVaadlAETVSGKACGTITGIINGSGSVTAAFGQMLIP 373
                  788888999999999999887.999999999***************************************99877655557777764444556777899********************************************88899999*********************************9999998888777...44444445555555555432555555555555..55556666655577777666..*****************************.9999888887777766666666666666555433346689************998876223336677899999999999888888877666555 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9  15.2   1.6e-22   8.4e-20      25     395 ..      24     404 ..       7     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 1.6e-22
    TIGR00893  25 glsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat..........alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilv.efsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg...kslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllG....nlagivgPivigaiaattGsfagallvvaalaligalsv 395
                  g++  ++  + saf++ y+ + +  g+l d ++  +++a+ ++  + ++ll+ f             ++ +  + ++ G + a   P ++ iv++W+P++ r+ + ++++  q++g ii++  ++ il  +++W+ + ii  vl  +++++ ++ ++++p++ + ++     + +  +l+  a+  ++ +k   + e++  ++v g+al++   ++++y +    p +l  +  +++ ++ +++sl     + g++  g++sd++  ++     +++++ ++++++    + ++ ++    +++++++  +++  + ++++++a  ++++s+++ g+ +G+in +G    + + ++ Pi+  + +a       ++ +++  a++g l++
  MMETSP1174-20130828|11383_1  24 GVTPYTLAAMDSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSAVLLLMVFGAstsiastaglCAIYFTSIQAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAYILGsSLDWRYAIIIPLVLNGLWSIMNFMCVPNDPSEFEDNN-----VNSTSGLVGSANAPDEDDKPIGFCEAFSVPNVAGYALAFGFFKLINYAMFFQLPFILAAN--FDPATSNIISSLYSFGMMPGGIVCGWVSDVFGARRacvCAFMMSILMPLMIFFGYFMDSMRVE-LLLPLLMIMGCLVGGPNNIITSAVAADLAETVSGKACGTITGIINGSGsvtaAFGQMLIPILYDYGKARGVGYRYVWFFLVLCAILGNLLM 404
                  66777888899***********************************9999998766779998997777788899*********************************************99887777651566****************************444433.....33444444555666778999****************************999999999765..789999*****99999999**************984544555555555555555555555554.33778888888899999988************************98883111345667788877766544336666666666666666655 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8  16.5   3.9e-22     2e-19      38     402 ..       3     365 ..       1     411 [. 0.78

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 3.9e-22
    TIGR00712  38 yaayylvrknfalalpylveqgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllpw....atssi.aimfvll.flngwfqgmgwppcgrtmvhwfsksergtivsiwnvahnigggilaalvllgialfvvwkaalylpaiiaiivallvvllvrdtpqscglpsieeyrndypddynekaekeltakeill..qyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagipgtllcgwvsdkvfkgkrgatgvlfmilvt..iavvvywlnpagnplvdlillivigfliygpvmlig.lhalelapkkaagtaag.ltglfgylggsvaasa 402
                  ya  +  rk ++    +l+  g +   l  + sa  ++y    fi g++ d   p  ++a+gll s++v ll+++       +t+++ ai f  +  + g+fq  g p     +  w+ k+ rg +   w + + +g  i a      +    +w+ a+ +p ++  + +++ ++ v + p      +++         +n   e++   k i +   + ++n      a+a  f  l+ y ++   p  l+   +f++  s+    ly +  +pg ++cgwvsd vf ++r+    ++m + +  +    y+++     l   +l +++g l+ gp  +i    a +la    +g a+g +tg++    gs + +a
  MMETSP1174-20130828|11383_1   3 YAMAHWTRKSYTNVKVQLLGVGVTPYTLAAMDSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSAVLLLMVFGAStsiaSTAGLcAIYFTSIqAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAYILGSSLDWRYAIIIPLVLNGLWSIMNFMCVPNDPSEFEDNNVNSTSG-LVGSANAPDEDD---KPIGFceAFSVPNV--AGYALAFGFFKLINYAMFFQLPFILA--ANFDPATSNIISSLYSFGMMPGGIVCGWVSD-VFGARRACVCAFMMSILMplMIFFGYFMDSMRVELLLPLL-MIMGCLVGGPNNIITsAVAADLAET-VSGKACGtITGII---NGSGSVTA 365
                  8888899999999999*****************************************************999987443111134444256665442699**************************************9999877666666778****************************9998888876554.445555555554...44444004455554..45578889**********99999885..68****************************9.8899999887766655441133345788877776665555.568*******998862567888865.3444444144443...34333333 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   3.1   5.9e-10     3e-07      97     225 ..      49     185 ..      32     193 .. 0.78
   2 !    4.4   1.4    0.0046       2.4      80     123 ..     258     301 ..     249     406 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.9e-10
    TIGR00894  97 Gylakkygtkkvigaalllssvlslli......Piaaavgvalviv..lRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPse 225
                  G+l ++++   +i+++ll ss + ll+       ia+++g   + +  + ++ G+ +++  p + +++  W P + R+++ +  +  + +G +i+   s +i +s+l W     i  +   +++i+ ++ v +dPse
  MMETSP1174-20130828|11383_1  49 GMLGDNFSPVTIIAIGLLGSSAVLLLMvfgastSIASTAGLCAIYFtsIQAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAYILGSSLDWRYAIIIPLVLNGLWSIMNFMCVPNDPSE 185
                  5666666666666665554444433331110004444444444333226889***********************************************************************************98 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0046
    TIGR00894  80 lilssvfygslilqipvGylakkygtkkvigaalllssvlslli 123
                  +i s  ++g++   i  G++++ +g ++  + a ++s+++ l+i
  MMETSP1174-20130828|11383_1 258 IISSLYSFGMMPGGIVCGWVSDVFGARRACVCAFMMSILMPLMI 301
                  5666678********************************99988 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   8.6   9.6e-05     0.049      49     179 ..      25     166 ..      22     192 .. 0.74
   2 !   21.8   7.3   3.2e-08   1.6e-05     259     395 ..     229     373 ..     220     376 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.6e-05
    TIGR00895  49 ldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasal..atnv...tqLlvlRflagl.GlGgll.....pnliaLvsEyapkrfratvvglvavGyaiGaavggllaa.llipafgWrslflvggi 179
                  +++ +l  + sa ++  + G+++ g+l D +  + ++++++l  s++ l++++  +t++     L+++ f +++  + g +     p  +++v  ++pk  r++v g+ ++   +G +++++ +a +l + ++Wr   ++  +
  MMETSP1174-20130828|11383_1  25 VTPYTLAAMDSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSAVLLLMVFgaSTSIastAGLCAIYF-TSIqAIHGFFqatggPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAyILGSSLDWRYAIIIPLV 166
                  5666777778899999999********************9998888888777622233311133444433.33324544442222267789999****************************998457899****98877533 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 3.2e-08
    TIGR00895 259 yflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvs.....tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigi....Grlgaiigpilag 395
                  + +  ++ Y++   lP++l+ a ++   + ++  l ++G++ g +++g+++d +g +   + + + ++++ l+++         ++lll ll+i+G +v g+   ++++ a   +  + + + g++ gi    G + a++g +l+ 
  MMETSP1174-20130828|11383_1 229 FGFFKLINYAMFFQLPFILA-ANFDPATSNIISSLYSFGMMPGGIVCGWVSDVFGARRACVCAFMMSILMPLMIFfgyfmDSMRVELLLPLLMIMGCLVGGPNNIITSAVAADLAETVSGKACGTITGIingsGSVTAAFGQMLIP 373
                  45566677777778887654.578999999***************************777777777777766554421022345678899999*****999987777776666666666666665555533338888888877765 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   4.6      0.12        61     122     176 ..     113     166 ..      25     188 .. 0.66
   2 !   21.2   4.5   5.5e-08   2.8e-05     252     380 ..     234     368 ..     225     373 .. 0.72
   3 ?    2.9   0.1     0.019       9.9     145     214 ..     365     435 ..     337     443 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.12
    TIGR00891 122 aalaiedvPkklrsvlsGllisgyavGfvlaavvys.vvvnvlgdsWriLfflsil 176
                  + ++ + +Pk+ r+++ G+      vG ++aa +   +++  l+  Wr+   + ++
  MMETSP1174-20130828|11383_1 113 TVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAyILGSSLD--WRYAIIIPLV 166
                  33344558************999999999998664314455555..9876655544 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5.5e-08
    TIGR00891 252 ylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialllgqllivPv....falsaekavLglglfllqllvqGvwGilP....khlaelapadaravvaGltYqlGnLaaala 380
                  ++ +a+   lP +L a   +++ t + i  ++ +G + Gg+v G +s+v+g r+a v+a +++ l+ + +    f+ s  + +L  +l ++  lv G   i+     + lae +   a + ++G+    G+++aa+ 
  MMETSP1174-20130828|11383_1 234 LINYAMFFQLPFILAA--NFDPATSNIISSLYSFGMMPGGIVCGWVSDVFGARRACVCAFMMSILMPLMIffgyFMDSMRVELLLPLLMIMGCLVGGPNNIITsavaADLAETVSGKACGTITGIINGSGSVTAAFG 368
                  5566666667777766..4789999999*********************************9966533331111566766666666668888999997777751111455666666777777777777777777775 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.019
    TIGR00891 145 yavGfvlaavvysvvvnvlgdsWriLfflsilpiil..alflrkrvpeaevwkeklkakklvktrvdkvlgg 214
                   a+G +l  ++y  +++ +g ++r+++f+ +l +il  +l+l k ++e  + ++ + +kk  ++  +++   
  MMETSP1174-20130828|11383_1 365 AAFGQMLIPILYD-YGKARGVGYRYVWFFLVLCAILgnLLMLPKIIKEISQDTDPQSTKKGYQSIGVELKNA 435
                  3566666666665.5788999****99999999999656888999999888888888887777666666555 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   5.5      0.03        16     132     243 ..      34     159 ..      26     183 .. 0.68
   2 !   16.6   0.7   1.1e-06   0.00058     128     175 ..     256     303 ..     250     343 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.03
    TIGR00898 132 qsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvta......vsgvltafspn....ytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgil.ievffalGllllallAYlird...WRw 243
                   s +++    Gs++ G l D f   +++ +  l+++      v+g  t ++ +     ++f+ +  + G+++a+  +v  v++  + pk+ R +v  +  +  +   ++     AY++ +   WR 
  MMETSP1174-20130828|11383_1  34 DSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSavlllmVFGASTSIASTaglcAIYFTSIQAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFwTCHQYVGDIIAAFASAYILGSsldWRY 159
                  577777777788888888888877777666554443000000333333333331111456777788**************************9987773677777777776678999987888996 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.1e-06
    TIGR00898 128 vkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltaf 175
                   ++++s++ +G++ G++v+G +sD fG +++ + + +++ ++ ++  f
  MMETSP1174-20130828|11383_1 256 SNIISSLYSFGMMPGGIVCGWVSDVFGARRACVCAFMMSILMPLMIFF 303
                  67899**********************999988888888877766655 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.3   1.3e-05    0.0069     343     500 ..      24     180 ..      19     182 .. 0.78
   2 ?    2.1   8.0     0.024        12      97     209 ..     252     367 ..     221     405 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.3e-05
    TIGR00879 343 GvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivai..vfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflp 500
                  Gv++ t   +  +++++ ++ +f+  +l d+f+  t+ +iG++g++++l+++   g+s   +  ++a+ +ai  ++i +   +++++ gpv  v+v    p++ R+k + + ++ ++++ +i a++  ++l +s+   ++ i++ +ln l  i+ ++++p
  MMETSP1174-20130828|11383_1  24 GVTPYTLAAMDSAFMFTYAGGSFITGMLGDNFSPVTIIAIGLLGSSAVLLLMV-FGASTSIA--STAGLCAIyfTSIQAIHGFFQATGGPVNTVIVNNWWPKEGRGKVFGFWTCHQYVGDIIAAFASAYILGSSLDWRYAIIIPLVLNGLWSIMNFMCVP 180
                  666655566677899999***********************999888877766.33444443..445666651156777889*************************************************99555554566666666666666666665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.024
    TIGR00879  97 sssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvig..ailsllaatalsvevlivgRvllGigvGiasal.vPlYisEiApkalRgalvslyqlaitfGilvaai 209
                    + + ++ s++++G + g+++ g++sd fg +++  ++ +++++    i+ +++  +++ve+l    +++G  vG+ +++ ++  ++ +A +  ++a++++  +    G ++aa+
  MMETSP1174-20130828|11383_1 252 DPATSNIISSLYSFGMMPGGIVCGWVSDVFGARRACVCAFMMSILMplMIFFGYFMDSMRVELLLPLLMIMGCLVGGPNNIiTSAVAADLAETVSGKACGTITGIINGSGSVTAAF 367
                  5567899999************************9999988888862245556777777788888888888888888765515556678888888888877776666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 934.24
//
Query:       MMETSP1174-20130828|11389_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|11391_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 751.60
//
Query:       MMETSP1174-20130828|11390_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 917.16
//
Query:       MMETSP1174-20130828|11395_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|11401_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|11403_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 453.35
//
Query:       MMETSP1174-20130828|11399_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-32  108.7   0.0    2.7e-25   87.0   0.0    2.1  2  TIGR02765 crypto_DASH: cryptochrome, DASH family
    5.7e-24   82.6   0.1    3.5e-19   66.8   0.0    2.1  2  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    1.4e-22   78.0   0.0      2e-18   64.3   0.0    2.2  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
      1e-06   26.2   0.0    1.5e-06   25.6   0.0    1.1  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.9e-08   7.1e-05     203     282 ..      75     154 ..      38     156 .. 0.81
   2 !   87.0   0.0   2.6e-28   2.7e-25     314     431 .]     264     380 ..     247     380 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.9e-08
    TIGR02765 203 ersslefkGGetsalarvkeyflsks..lksYketRngllgvdystklspwLalGcvsarqihealkrYekergendstywv 282
                   r   ++ GGe+ a+a+++ +++s++   ++   + n     +  ++lsp+L  G +s r++ ++lk+  ++  +n++ ++v
  MMETSP1174-20130828|11399_1  75 DREGRDVFGGESRAVAQLEGFLMSRGkdYATGISSPN--SSWSSCSRLSPYLSWGHISLRHVLQRLKQRQATLRANKGKKTV 154
                  34466888*************9987622444444444..3566779******************************998887 PP

  == domain 2    score: 87.0 bits;  conditional E-value: 2.6e-28
    TIGR02765 314 aktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                  ++ +  +  l +w eg tg+plvda+mr L +tG++  R R +v sf  ++l l+W   a +   + +Dy+ +  +   q  aGv++     R++n+ kqakd Dp g ++++Wv+el
  MMETSP1174-20130828|11399_1 264 TSSSASRLALVAWTEGLTGFPLVDACMRCLRRTGWINFRMRAMVVSFACHNLWLEWTTIAPHLGRCFLDYEPGIHYPQIQMQAGVTGI-NAMRVYNVLKQAKDQDPMGVFIRKWVPEL 380
                  344555557889*************************************************************************987.789***********************985 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.1e-06    0.0042     212     270 ..      89     149 ..      79     157 .. 0.72
   2 !   66.8   0.0   3.4e-22   3.5e-19     322     467 ..     273     423 ..     267     437 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.1e-06
    TIGR02766 212 dklleefiekqlleysknrkkvds..astsllspylhfgevsvrkvfqlvrlkqivwaneg 270
                     le f+     +y+      +s  +s s lspyl +g +s+r+v q  + +q +   ++
  MMETSP1174-20130828|11399_1  89 VAQLEGFLMSRGKDYATGISSPNSswSSCSRLSPYLSWGHISLRHVLQRLKQRQATLRANK 149
                  5567777777777787655444431268899****************99998887765544 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 3.4e-22
    TIGR02766 322 fkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdape.....svlkaa..gvelgsnypkpivd 467
                  + aw +g tg+plvda mr l  tgw+  r+r +v sfa + l l w+    ++   +ld +        q  +g    g +  r+ n   + +  dp g+++r+w+pel+  p + ih p    +      v + +       + yp pivd
  MMETSP1174-20130828|11399_1 273 LVAWTEGLTGFPLVDACMRCLRRTGWINFRMRAMVVSFACHNLWLEWTTIAPHLGRCFLDYEPGIHYPQIQMQAGV--TGINAMRVYNVLKQAKDQDPMGVFIRKWVPELSDSPLDLIHDPRAKGAkgaggKVSRNSirSTLRAAGYPAPIVD 423
                  569********************************************************97766666666666664..688899************************************975322111102222211022234557777775 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   2.3e-05     0.024     206     276 ..      83     155 ..      77     168 .. 0.87
   2 !   64.3   0.0     2e-21     2e-18     319     467 ..     273     434 ..     266     437 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.3e-05
    TIGR03556 206 pgeaaaeakleefvdkaieeyqeqrnfpal..dgtsqlsaalkfgvigirtvwqatlealeasrseearesir 276
                   ge+ a a+le f     ++y      p    +  s+ls+ l +g i++r+v q  ++  ++ r+++ +++++
  MMETSP1174-20130828|11399_1  83 GGESRAVAQLEGFLMSRGKDYATGISSPNSswSSCSRLSPYLSWGHISLRHVLQRLKQRQATLRANKGKKTVQ 155
                  699********************9999976226789*******************999999999888877765 PP

  == domain 2    score: 64.3 bits;  conditional E-value: 2e-21
    TIGR03556 319 fqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsas.sgmdpkplrifnpasqaqkfdpeaeyirrwlpelrs.....l.d....tkdlvtgkitpler....ravgypkpivdhkkqqkkfkql 467
                  + aw+eg tg+p+vda mr l +tgw+  r r +v sf  ++l ++w     ++ + ++d +        q  a  +g+    +r++n   qa+  dp + +ir+w+pel       + d      +   gk++  +     ra gyp+pivd     +  k++
  MMETSP1174-20130828|11399_1 273 LVAWTEGLTGFPLVDACMRCLRRTGWINFRMRAMVVSFACHNLWLEWTTIAPHLGRCFLDYEPGIHYPQIQMQAGvTGI--NAMRVYNVLKQAKDQDPMGVFIRKWVPELSDspldlIhDprakGAKGAGGKVSRNSIrstlRAAGYPAPIVDEVSTARAAKNR 434
                  679**************************************************************99999998852455..679*************************98622111111111122334677776553122256899****9998887777765 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-09   1.5e-06     214     281 ..      74     142 ..      64     156 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.5e-09
    TIGR00591 214 evkevelakpGtkaglevleefiskrLklfeekrndPnk..dalsnlsPylhfGqlsaqrvalevkrars 281
                  e++e + + +G++ ++++le f+  r k +++    Pn    + s+lsPyl +G++s ++v ++ k+  +
  MMETSP1174-20130828|11399_1  74 EDREGRDVFGGESRAVAQLEGFLMSRGKDYATGISSPNSswSSCSRLSPYLSWGHISLRHVLQRLKQR-Q 142
                  5566666789***************************99667899************99998887744.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1361.44
//
Query:       MMETSP1174-20130828|11406_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 853.53
//
Query:       MMETSP1174-20130828|11409_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1402.86
//
Query:       MMETSP1174-20130828|11416_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   12.9   0.0     0.0039   12.8   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.6e-07    0.0039     124     181 ..       4      54 ..       1      62 [. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.6e-07
    TIGR03903 124 LDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                   D Gi+ +l  + d++++        +G+P+++aPe   + p    +D+++ G ++ e
  MMETSP1174-20130828|11416_1   4 GDMGIAKMLDSTCDIART-------QVGTPHFSAPEIFQDQPYSWPADMWSLGCVLYE 54 
                  566777777666665444.......58**************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|11419_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1174-20130828|11423_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1174-20130828|11424_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1074.77
//
Query:       MMETSP1174-20130828|11421_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 1622.98
//
Query:       MMETSP1174-20130828|11420_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   28.6   0.0    2.1e-07   27.0   0.0    1.7  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.5e-06   24.5   0.0    5.6e-06   23.8   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     1e-10   2.1e-07       1     134 [.     198     355 ..     198     427 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1e-10
    TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLl..................DsGeaedg.llFavFeyv....eGr...tlrevLaadGa..LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpg 134
                  et++ va+k ++ + +e+e       Rei++ ++L+hPniv+L+                  D+G  +d+  ++ vFey     +G+     r  + +d    +++a+      q L+++ + h++ ++hRDLk  ni++  +++    k+ D+G++   ++
  MMETSP1174-20130828|11420_1 198 ETNQYVALKKVKME-SEKEGFPITAIREIKILQNLEHPNIVRLVeivtdseerkekesssggDQGLMGDDtSIYMVFEYLdydlAGLieySNRSAMDNDIQvrITSAHVKCYFKQLLEGVCHMHKNKILHRDLKGPNILINRNGQL---KIADWGLARQYSE 355
                  689999**999998.67777777788*****************866665555555555555556666555269******73222465211335555554331144555566789**************************998865...6778888765554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.7e-09   5.6e-06      94     142 ..     307     356 ..     283     367 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.7e-09
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskev 142
                   ++k++ e v+++Hk++i+h Dl   Ni++ ++++l + D GL+++ +e 
  MMETSP1174-20130828|11420_1 307 CYFKQLLEGVCHMHKNKILHRDLKGPNILInRNGQLKIADWGLARQYSEK 356
                  688999999*******************9956999*********986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 1926.41
//
Query:       MMETSP1174-20130828|11425_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1514.87
//
Query:       MMETSP1174-20130828|11426_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|11428_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|11430_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|11432_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-12   42.9   0.1    0.00011   20.0   0.0    3.1  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0027        11      16      33 ..       3      20 ..       2      22 .. 0.86
   2 !   20.0   0.0   2.6e-08   0.00011       9      34 ..      32      57 ..      28      58 .. 0.91
   3 !   15.5   0.0   7.4e-07    0.0031       7      33 ..      65      91 .]      60      91 .] 0.95

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0027
    TIGR00756 16 veeAlelfdeMkergivP 33
                 + + l+l+  M++rg++ 
  MMETSP1174-20130828|11432_1  3 WGKILQLLGVMQRRGMSL 20
                 778999*********986 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 2.6e-08
    TIGR00756  9 glckagrveeAlelfdeMkergivPd 34
                 ++ ++g++  Al+l+d+Mk+rg++P+
  MMETSP1174-20130828|11432_1 32 ACEQEGEWGQALQLMDDMKRRGMEPS 57
                 67789********************8 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 7.4e-07
    TIGR00756  7 isglckagrveeAlelfdeMkergivP 33
                 ++++ kag++ ++l+l deM++rg+vP
  MMETSP1174-20130828|11432_1 65 LRACKKAGQWWDVLQLTDEMHRRGFVP 91
                 789***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1174-20130828|11429_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 953.92
//
Query:       MMETSP1174-20130828|11433_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|11434_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|11431_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 646.29
//
Query:       MMETSP1174-20130828|11435_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   28.5   0.0    2.2e-07   28.3   0.0    1.1  1  TIGR03611 RutD: pyrimidine utilization protein D
    1.7e-06   25.5   0.0    2.2e-06   25.1   0.0    1.1  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    9.5e-06   23.2   0.0    1.4e-05   22.6   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    3.8e-05   21.3   0.0    6.1e-05   20.6   0.0    1.3  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0014   15.7   0.0     0.0014   15.7   0.0    1.1  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
     0.0087   13.3   0.0      0.011   13.0   0.0    1.1  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.039   11.1   0.0      0.051   10.7   0.0    1.2  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase


Domain annotation for each model (and alignments):
>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.8e-10   2.2e-07     169     256 ..      63     148 ..      34     151 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.8e-10
    TIGR03611 169 lahfpgkenvLrrinaLeafdvdarldriklpvlliaakDD.lLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldfLa 256
                   a +  + +v++ri  +   d+  r ++i++++ll+  ++D +  P t   eL+++LP+++l  l+ Ggh   +t+p++f +++ +f++
  MMETSP1174-20130828|11435_1  63 EASWVHHYSVMKRIRLVIGLDMCERSKQIQQKTLLVYGREDnFTLPGT--MELHRNLPNSQLFDLP-GGHLPHLTEPKEFAAAVDAFVS 148
                  567778899********************9999998776551667765..79***********998.99*************9999986 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.7e-09   2.2e-06     182     250 ..      81     147 ..      70     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.7e-09
    TIGR02427 182 dadlrerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                   +d+ er ++i+  tl++ G+eD  t p ++ e+   +p++++  ++ ++Hlp l +p++faa++ +f+
  MMETSP1174-20130828|11435_1  81 GLDMCERSKQIQQKTLLVYGREDNFTLPGTM-ELHRNLPNSQLFDLP-GGHLPHLTEPKEFAAAVDAFV 147
                  5799**********************99765.7999***********.*****************9997 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.4e-08   1.4e-05     222     287 ..      83     147 ..      69     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.4e-08
    TIGR01250 222 ditdklkeIkvPtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdfl 287
                  d+ ++ k+I+  tLl+ g+ d+ t+  + e++ ++++s+l   + g+hl+ ++ep+e+ + +  f+
  MMETSP1174-20130828|11435_1  83 DMCERSKQIQQKTLLVYGREDNFTLPGTMELHRNLPNSQLFDLP-GGHLPHLTEPKEFAAAVDAFV 147
                  7889999********************************98887.78**************99997 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     1e-07   6.1e-05     178     245 .]      82     147 ..      69     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1e-07
    TIGR01738 178 vDlRralqkisvPvLrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaallrefv 245
                   D+ +  ++i+  +L++yG+ D+++ + ++ +l++ +p+s+l+ l  ++h P l+++++faa++ +fv
  MMETSP1174-20130828|11435_1  82 LDMCERSKQIQQKTLLVYGREDNFTLPGTM-ELHRNLPNSQLFDLP-GGHLPHLTEPKEFAAAVDAFV 147
                  57777889999*************977665.69*********9996.68*************999885 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.5e-06    0.0014     203     263 ..      72     130 ..      37     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.5e-06
    TIGR03343 203 lsskkaplsawdvvdrlgeikaktlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghw 263
                  +  +   +   d+++r ++i++ktl+ +gr+d f  l   + l  nlp++ql  ++  gh 
  MMETSP1174-20130828|11435_1  72 VMKRIRLVIGLDMCERSKQIQQKTLLVYGREDNFT-LPGTMELHRNLPNSQLFDLP-GGHL 130
                  5555556778899********************95.889999*********98765.4555 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.9e-05     0.011     188     251 ..      85     147 ..      78     148 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.9e-05
    TIGR03695 188 weklkelklpvlylvGekDekFkkiakemqkllpalklevieeaGHnihlenpeafakileefl 251
                   e+ k+++ ++l++ G +D+       e++++lp+++l  ++  GH  hl +p++fa+++ +f+
  MMETSP1174-20130828|11435_1  85 CERSKQIQQKTLLVYGREDNFTLPGTMELHRNLPNSQLFDLPG-GHLPHLTEPKEFAAAVDAFV 147
                  567789999**********988888899999**********98.****************9997 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.8e-05     0.051     202     268 ..      87     152 ..      61     154 .] 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.8e-05
    TIGR02240 202 wlhkirqptlvlagdddpliplinmrllawripnaelhviddghlflvtraeavapiimkflaeerr 268
                    ++i+q tl++ g +d +     m  l   +pn++l  +  ghl  +t  +  a  +  f+++ ++
  MMETSP1174-20130828|11435_1  87 RSKQIQQKTLLVYGREDNFTLPGTME-LHRNLPNSQLFDLPGGHLPHLTEPKEFAAAVDAFVSQSKQ 152
                  5679**********999876555565.6789*******************99999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|11442_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.68
# Mc/sec: 287.27
//
Query:       MMETSP1174-20130828|11440_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 805.13
//
Query:       MMETSP1174-20130828|11441_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-31  106.1   0.0    7.1e-22   75.4   0.0    2.2  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    2.2e-06   25.1   0.0    3.8e-06   24.3   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   3.5e-25   7.1e-22     220     342 ..      14     131 ..       3     136 .. 0.91
   2 !   28.4   0.0   6.1e-11   1.3e-07     378     423 ..     191     236 ..     160     246 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 3.5e-25
    TIGR01982 220 ivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsd 342
                    P+v+  +t+e+vl++ew+ g  ++ l   k+aGl + ++a    e + +  +  g+ HaD+H+GN+++a dg++++lDfG++++++++  +++a  +++ l++dyk +a v +++g++  d
  MMETSP1174-20130828|11441_1  14 DTPNVVTRYTTEQVLVTEWVRGAHLRALP--KAAGLRMTRMAV---EAVTASLVLTGYVHADPHEGNLMLADDGRLVFLDFGLMSSVEPSIMEAFATGIQACLSEDYKTLARVFVDVGFLILD 131
                  57**********************99776..689999888885...5566677789**************************************************************98766 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 6.1e-11
    TIGR01982 378 kitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvk 423
                  +++ ++++ ++p +lLL++t+lt+EG++ ++dp+++++++a p+  
  MMETSP1174-20130828|11441_1 191 RLAPNWKMFTPPYILLLIRTFLTLEGIAAEVDPTFNIYDAATPWAL 236
                  467789*************************************975 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.9e-09   3.8e-06      59     138 ..      13      94 ..       8     112 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.9e-09
    TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekelellkevGe.lvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  v tP v+   + e+ +v e ++g +l+ l ++  l++++++ e +++ l  +g vh D++  N+++ +d++l+++DfGL + 
  MMETSP1174-20130828|11441_1  13 VDTPNVVTRYTTEQVLVTEWVRGAHLRALPKAAGLRMTRMAVEaVTASLVLTGYVHADPHEGNLMLaDDGRLVFLDFGLMSS 94 
                  88******************************9998777665515689****************9955889*******9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.69
# Mc/sec: 1031.05
//
Query:       MMETSP1174-20130828|11444_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   12.3   1.9     0.0099   11.7   1.3    1.1  1  TIGR00605 rad4: DNA repair protein rad4


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   1.3   2.4e-06    0.0099     298     360 ..     284     339 ..     279     352 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.4e-06
    TIGR00605 298 htktrpvstvvanagdtddsdfeevadadlssdqddgetpnisgdleirvgleglrptkeqkt 360
                  h kt+  +  +an g t+dsd    +d+d s d+ dg+ p is            rp+k++k+
  MMETSP1174-20130828|11444_1 284 HGKTKAAAQQLANKGTTNDSDS---SDSDTSEDESDGDGPAISVP----GSSSSSRPAKKKKK 339
                  99******************95...79***************943....34455677765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.63
# Mc/sec: 1106.19
//
Query:       MMETSP1174-20130828|11446_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 190.06
//
Query:       MMETSP1174-20130828|11447_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    5.0   6.7       0.92    4.8   4.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.6   0.00022      0.92     914     979 ..      10      73 ..       2      77 .] 0.80

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00022
    TIGR00927 914 veaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseee 979
                  + +++ + e+e+ e +e   ++++++++k++ +e++l a+n g+ k+d   v+  + s   +se+e
  MMETSP1174-20130828|11447_1  10 SSHDDRKAEEEHAELQERLAKRKKKRNAKKKPKEANLDADNAGQIKDDWTVVETAESSA--KSEDE 73 
                  4567777788888888888899999999999******************9999988875..45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       309  (0.0753291); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|11450_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|11451_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-20   71.0   0.6    1.8e-20   70.7   0.4    1.1  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.4   4.5e-24   1.8e-20     220     419 ..      93     296 ..      51     303 .. 0.86

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 4.5e-24
    TIGR00815 220 vatlavsvg...ksskkrgvsilghipsg....pevvpekildgellsalapdaiaialvgllesiaiaksfarmkgykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrglvdlkelyklwkvsklDvvvllvtvflvvftsieiGllvgvalSla 419
                  +at +++ +   +  +++g+s++g+ip+      + + + +l +e  + l+  a++ a v +  ++ai  +f    g k ++n+E +  G aN++++ ++c p  gsl rs++ + +g+++ ++avv ++ ++++l  l  ++  +pkavlaa+++ +v + + +   + l  ++ +D ++  +t++++  +s +iG+++g al+++
  MMETSP1174-20130828|11451_1  93 FATAVATGLslyLGYEDYGGSVVGEIPAAatklIPDIYWSSLPWEESPRLVIPALIFAAVNFSATVAICGAFEVDYGIKWEPNREFLVSGAANVVAGVVGCPPFGGSLTRSLLTKLTGGRSSVAAVVNGLSMMMLLPYL-GVISATPKAVLAAVVLASVCKEIVYP--KSLLALKGSDRLLGWATAVVTSCSSPTIGIIFGSALAVI 296
                  44444433344467899************944444455667889************************************************************************************99988877777.799****************9955554..35666777888999999999*************777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.54
# Mc/sec: 755.27
//
Query:       MMETSP1174-20130828|11455_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-36  122.3   0.0      4e-36  122.1   0.0    1.0  1  TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4
    5.2e-21   73.1   0.0      8e-21   72.5   0.0    1.3  1  TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain


Domain annotation for each model (and alignments):
>> TIGR00758  UDG_fam4: uracil-DNA glycosylase, family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0     2e-39     4e-36      39     157 ..       2     119 ..       1     139 [. 0.93

  Alignments for each domain:
  == domain 1    score: 122.1 bits;  conditional E-value: 2e-39
    TIGR00758  39 GkPfvGkaGklldelleaiGlkreevyitnvvkcrPPanrdPteeeveaCapylekqielirPkvivvlGrtaaesllkkaegiskvrgrvfeyetlskkikvvaiyhPaavlrnpklk 157
                  G+PfvG++Gklld++lea+ ++ +evyitn vk rPP+nrdPt  e++  ap+l ++i l+ P +i+++Gr a + +l++++gi+k+rg++ e e  +k    + i+hPa++lrn +++
  MMETSP1174-20130828|11455_1   2 GTPFVGRSGKLLDKILEAAEIS-NEVYITNAVKRRPPENRDPTLAELRWYAPWLMEEIRLVDPLIILCVGRLAMKAILDESQGITKIRGKWVERELAGKSRLCMPIFHPAYLLRNASRE 119
                  99*******************8.78**********************************************************************99999999***********98765 PP

>> TIGR03914  UDG_fam_dom: uracil-DNA glycosylase family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   3.9e-24     8e-21      93     215 ..       2     119 ..       1     134 [. 0.85

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 3.9e-24
    TIGR03914  93 GrPfvGPaGqlldralaeaGidrekayvtnavkhfkfeprGkrRlhqkPeakevkacrwWleaelelvrPklvvalGataaqallgkavkiskaRgrliald...dgaellvtvhPsylLRlpdee 215
                  G PfvG +G+lld++l+ a i  +++y+tnavk    e+       + P+ +e++ +  Wl +e++lv P +++++G  a++a+l++++ i+k Rg++ +++   +++  +  +hP+ylLR +++e
  MMETSP1174-20130828|11455_1   2 GTPFVGRSGKLLDKILEAAEIS-NEVYITNAVKRRPPEN-------RDPTLAELRWYAPWLMEEIRLVDPLIILCVGRLAMKAILDESQGITKIRGKWVERElagKSRLCMPIFHPAYLLRNASRE 119
                  99******************97.579******9755444.......48*************************************************98876321223345568*******97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 723.66
//
Query:       MMETSP1174-20130828|11453_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1035.07
//
Query:       MMETSP1174-20130828|11458_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 372.87
//
Query:       MMETSP1174-20130828|11459_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   38.7   3.9    3.9e-10   37.5   2.8    1.6  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
    5.9e-06   23.7   3.7    6.2e-06   23.6   0.2    2.0  2  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   2.8   1.9e-13   3.9e-10      35     115 ..     137     217 ..      98     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.9e-13
    TIGR00980  35 kGfrnspkGeklvgalaaiktrapvlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsai 115
                  k    +p+ e+ + + +a  +r+  +G n+a   Glf+ ++c + + r+k d +n+++sG  +Ga++ ++sGp   a +++
  MMETSP1174-20130828|11459_1 137 KEVPQAPMSEQFRLSWRATTVRSVAMGWNLASISGLFTGFECVVEKARGKHDVMNAMLSGCAAGAAIQAKSGPASSAMGCA 217
                  5556788899999999*********************************************************87655544 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.028        58      43      58 ..     104     119 ..      96     135 .. 0.70
   2 !   23.6   0.2     3e-09   6.2e-06      80     142 ..     157     218 ..     143     225 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.028
    TIGR00983  43 ltGlaiGalvGlreGl 58 
                  ++G+++G+++G+  G+
  MMETSP1174-20130828|11459_1 104 VGGTVAGGVMGVLFGM 119
                  4566777777766665 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 3e-09
    TIGR00983  80 rrGallgnslGilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavssalv 142
                   r   +g +l +++ ++++++ ++e+argk+dv+n++  G   Ga +++  G  + a++ a +
  MMETSP1174-20130828|11459_1 157 VRSVAMGWNLASISGLFTGFECVVEKARGKHDVMNAMLSGCAAGAAIQAKSGPASSAMGCA-G 218
                  566678999999***************************************9988887655.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 854.26
//
Query:       MMETSP1174-20130828|11461_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 580.06
//
Query:       MMETSP1174-20130828|11464_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1174-20130828|11462_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          9    2.7  10.8         13    2.2   7.5    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   7.5    0.0032        13      69     101 ..     134     163 ..     115     170 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0032
    TIGR01645  69 ameqsikqvllkqtlahqkqqlenqqrqvqrqq 101
                  a +qsi  v   q +a q+qq+++qq+q q+qq
  MMETSP1174-20130828|11462_1 134 AADQSIAAV---QPIAEQQQQQQQQQQQQQQQQ 163
                  678888776...899***999999999978877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 848.15
//
Query:       MMETSP1174-20130828|11463_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 638.83
//
Query:       MMETSP1174-20130828|11470_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 525.32
//
Query:       MMETSP1174-20130828|11471_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-13   45.5   0.4     0.0013   14.6   0.0    3.9  4  TIGR00870 trp: transient-receptor-potential calcium channel protein
     0.0024   14.6   0.0     0.0029   14.3   0.0    1.1  1  TIGR00959 ffh: signal recognition particle protein
  ------ inclusion threshold ------
      0.031   11.1   0.1       0.37    7.6   0.0    2.0  2  TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.5e-06    0.0021     133     158 ..      57      82 ..      29      87 .. 0.92
   2 !   10.7   0.0   1.6e-05     0.021     130     160 ..      87     117 ..      83     120 .. 0.92
   3 !    2.2   0.0    0.0058       7.9     131     160 ..     121     150 ..     118     155 .. 0.85
   4 !   14.6   0.0   9.8e-07    0.0013     130     163 ..     153     187 ..     148     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-06
    TIGR00870 133 talilAihkqnyeivklLlekgasve 158
                  tal+ A+ +  +++v++Ll++gasv 
  MMETSP1174-20130828|11471_1  57 TALHFAAANGHITCVRILLNQGASVD 82 
                  9***********************96 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.6e-05
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvear 160
                  +g t+l++A ++    +++ L+++ga++ a+
  MMETSP1174-20130828|11471_1  87 VGFTPLHMAGMNGRTACLRELVQRGADITAA 117
                  689*************************875 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.0058
    TIGR00870 131 gitalilAihkqnyeivklLlekgasvear 160
                  g tal++A+  + +e+ + L   ga v+a 
  MMETSP1174-20130828|11471_1 121 GGTALHVAARSNRVECCRELSVLGAPVNAL 150
                  78***************9999999988864 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 9.8e-07
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasve.arakg 163
                   g t+l+lA+ +    +v++L+e+ga+v  +  +g
  MMETSP1174-20130828|11471_1 153 TGETPLHLAALNGYDAVVRILVEQGADVVvVDTNG 187
                  699************************98666665 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.1e-06    0.0029     130     211 ..     123     206 ..      93     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-06
    TIGR00959 130 kvllvalDlyRpaAveqLkvlgeqvgvpvfekekeks..pveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevl 211
                  ++l va+  +R+     L+vlg  v++ + + e+  +  +++   + ++ + e++ dvv+vDt GR + d +l +  +e+ + l
  MMETSP1174-20130828|11471_1 123 TALHVAARSNRVECCRELSVLGAPVNALTNTGETPLHlaALNGYDAVVRILVEQGADVVVVDTNGRSAADAALARGKTEVANYL 206
                  5788899999999999999999998876555444332225666678889999********************998888877665 PP

>> TIGR00521  coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00027      0.37     185     254 ..      69     139 ..      56     168 .. 0.75
   2 ?    1.7   0.0     0.017        23      21      39 ..     168     186 ..     159     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00027
    TIGR00521 185 kgkrvlitagptrEaiDpvRvisNkSsGkmg.lalAeaavkrGakVtliagpvsleepkevksikvltaee 254
                     r+l+ +g++++++D v +   + +G  g  a  +++v+rGa++t  ++   +     ++s +v+  +e
  MMETSP1174-20130828|11471_1  69 TCVRILLNQGASVDPLDRVGFTPLHMAGMNGrTACLRELVQRGADITAASSWGGTALHVAARSNRVECCRE 139
                  55699************************994467799*********987655544444666666655554 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.017
    TIGR00521  21 elvreLvkagaevkvilte 39 
                  ++vr Lv++ga+v v+ t+
  MMETSP1174-20130828|11471_1 168 AVVRILVEQGADVVVVDTN 186
                  5899999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|11474_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1174-20130828|11476_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1342.99
//
Query:       MMETSP1174-20130828|11475_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-09   34.0   0.4    2.8e-06   25.1   0.0    2.2  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    6.8e-05   19.7   0.3    0.00018   18.3   0.3    1.5  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00016   18.8   0.0     0.0009   16.4   0.0    2.0  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00029   17.1   0.1    0.00085   15.6   0.0    1.6  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0004   16.8   0.1    0.00095   15.6   0.0    1.6  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0005   16.7   0.2     0.0008   16.0   0.1    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00058   16.6   0.2     0.0008   16.2   0.2    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00075   16.4   1.4       0.12    9.2   0.1    2.3  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00084   16.1   0.1     0.0012   15.5   0.1    1.2  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0012   16.1   1.1     0.0017   15.5   0.7    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0016   15.1   0.2      0.084    9.4   0.0    2.4  3  TIGR02028 ChlP: geranylgeranyl reductase
     0.0026   14.7   0.5     0.0041   14.1   0.4    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0037   13.7   0.1     0.0051   13.2   0.0    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.009   12.7   0.1      0.018   11.7   0.1    1.5  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
  ------ inclusion threshold ------
      0.015   11.7   0.1      0.021   11.2   0.1    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      0.019   11.7   0.1      0.026   11.3   0.1    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      0.025   11.4   0.1      0.036   10.9   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.027   11.9   0.4      0.066   10.7   0.3    1.6  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
       0.03   10.8   0.3      0.072    9.6   0.2    1.6  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.032   10.2   0.1      0.045    9.7   0.1    1.2  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.032   10.9   0.1      0.056   10.1   0.0    1.4  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.036   10.4   0.1      0.068    9.5   0.0    1.3  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      0.039   10.4   1.7      0.054   10.0   1.2    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
      0.064    8.8   0.5      0.086    8.4   0.3    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
      0.064    9.9   0.1      0.087    9.4   0.1    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.7e-08   2.8e-06       1     146 [.       4     163 ..       4     223 .. 0.74
   2 !    7.1   0.1    0.0049      0.81     267     297 .]     324     354 ..     315     354 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.7e-08
    TIGR02032   1 yDvvvvGaGpaGssaAlrlakkG......lrVlllekkelpre.keCggalskraveelelpk...elivnevr..kariispngek.veieee.......eeealvidRkefDelLaekAqeagaelllettvlsveied.ekvkvevredekkevtakivigAdG 146
                  yDvv vG+GpaG +aA rl++        l+V ++ek ++ ++ +  g++ ++ra++el  +    e+ v++    +a +++pn ++  +i++        +   ++i+  ++ + L ++A+e g+e++ + ++ +v   +  +++v v++        ++ +g dG
  MMETSP1174-20130828|11475_1   4 YDVVTVGGGPAGLAAAIRLKQRAleqgtdLSVCVVEKGAELGAhILSGNVFETRALDELIPDWrekECPVETEVteDAFLVLPNDSTgFQIPNMllpsqldNHGNYIISLSQLVRWLGDQAEELGVEIYPGFAASEVLYSEdGSAVVGVAT-------RDVGVGKDG 163
                  9****************99986522223368***********989999999999999987765777444444334499999999999999999899999989999**********************999888887776653333333333.......234445555 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0049
    TIGR02032 267 lvGDAAglVkPltGeGIayamvagklAaevv 297
                  lvG +Ag+ ++++  G  +a+++g++A+e+v
  MMETSP1174-20130828|11475_1 324 LVGCSAGFLNSVKIKGSHTAIKSGMVAGEAV 354
                  8999*************************97 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   1.1e-06   0.00018       1      38 [.       6      49 ..       6      56 .. 0.87
   2 ?   -2.8   0.0       2.9   4.7e+02     107     138 ..     115     147 ..     112     157 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.1e-06
    TIGR00275  1 viiiGgGaaGlmaAitaae......egakVlllEknkkigkKll 38
                 v+ +GgG+aGl aAi++++      ++++V+++Ek  ++g+ +l
  MMETSP1174-20130828|11475_1  6 VVTVGGGPAGLAAAIRLKQraleqgTDLSVCVVEKGAELGAHIL 49
                 678*************9987776666789***********9986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.9
    TIGR00275 107 svldaLlkelkelgvevlteskvksi.kkeeek 138
                  ++++ L ++++elgve++   + +++  +e++ 
  MMETSP1174-20130828|11475_1 115 QLVRWLGDQAEELGVEIYPGFAASEVlYSEDGS 147
                  678888889999999999888888776555554 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.5e-06    0.0009      20      67 ..       2      54 ..       1      84 [. 0.82
   2 ?   -0.5   0.0      0.75   1.2e+02     105     153 ..     119     167 ..     100     219 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.5e-06
    TIGR00292 20 aesDviivGaGpsGLtaayylakeg......lkvvvlerklaiGGGswgGGmlf 67
                 +e Dv+ vG+Gp+GL+aa  l ++       l v+v+e+   +G  + + G +f
  MMETSP1174-20130828|11475_1  2 MEYDVVTVGGGPAGLAAAIRLKQRAleqgtdLSVCVVEKGAELGAHI-LSGNVF 54
                 789***************999766545568899*****988887655.445555 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.75
    TIGR00292 105 klaskaldagvkilnavsveDlilrddtvgvaGvvinwsaielaGlkvD 153
                   l  +a ++gv i+ + +  +++  +d  +v Gv ++   +   G k  
  MMETSP1174-20130828|11475_1 119 WLGDQAEELGVEIYPGFAASEVLYSEDGSAVVGVATRDVGVGKDGEKKS 167
                  56667889999999999999*******9999999999888877776655 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.2e-06   0.00085     381     440 ..       5      69 ..       1      82 [. 0.73
   2 ?   -1.6   0.0      0.85   1.4e+02     429     471 ..     112     154 ..     105     164 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.2e-06
    TIGR03997 381 kvlvvGgGPaGleaaataarr....Gh..rvtllereeelGGqvklaaklpgreelaelvrdlase 440
                   v+ vGgGPaGl+aa+   +r    G   +v ++e+++elG ++         + l el+ d+ ++
  MMETSP1174-20130828|11475_1   5 DVVTVGGGPAGLAAAIRLKQRaleqGTdlSVCVVEKGAELGAHILSGNVF-ETRALDELIPDWREK 69 
                  6999***********86555422226533599**********99876666.666799999888653 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.85
    TIGR03997 429 elaelvrdlaselkelgvevklGveadaelvlaekPDavvlat 471
                   l++lvr l  + +elgve+  G  a++ l  ++   +v +at
  MMETSP1174-20130828|11475_1 112 SLSQLVRWLGDQAEELGVEIYPGFAASEVLYSEDGSAVVGVAT 154
                  578999*****************99887666666666666887 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.8e-06   0.00095     373     435 ..       4      72 ..       1      82 [. 0.78
   2 ?   -2.6   0.0       1.8     3e+02     421     447 ..     111     137 ..     105     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.8e-06
    TIGR03996 373 gdvlvvGGGpaGleaarvlavr....G..hrvtlaeasarlGGmvriaargdGlsrlaaladwledecr 435
                   dv+ vGGGpaGl aa  l  r    G   +v ++e++a+lG  +      + +   +++ dw e+ec 
  MMETSP1174-20130828|11475_1   4 YDVVTVGGGPAGLAAAIRLKQRaleqGtdLSVCVVEKGAELGAHILSGNVFETRALDELIPDWREKECP 72 
                  58999********99944433312223225899***********99988888888889999*******5 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.8
    TIGR03996 421 srlaaladwledecrrlGvelrlgaav 447
                    l+ l  wl d+ + lGve+  g a 
  MMETSP1174-20130828|11475_1 111 ISLSQLVRWLGDQAEELGVEIYPGFAA 137
                  5688999*************9877654 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.8e-06    0.0008       1      37 [.       3      46 ..       3      59 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.8e-06
    TIGR01350  1 eydvvviGgGpgGYvaAiraaql......glkvalvek.eklGG 37
                 eydvv +GgGp+G  aAir  q        l+v +vek  +lG 
  MMETSP1174-20130828|11475_1  3 EYDVVTVGGGPAGLAAAIRLKQRaleqgtDLSVCVVEKgAELGA 46
                 69*****************9996222222467999999777775 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.9e-06    0.0008       1      34 [.       5      43 ..       5      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.9e-06
    TIGR01988  1 divIvGgGlvGlalAlaLassa.....dlkvalveakaa 34
                 d+v vGgG++Gla A++L+++a     dl+v +ve+ a+
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKQRAleqgtDLSVCVVEKGAE 43
                 89*****************99999999999999999865 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00073      0.12       1      23 [.       4      26 ..       4      42 .. 0.90
   2 !    6.0   0.1    0.0064       1.1     262     309 ..     318     364 ..     285     372 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00073
    TIGR02023  1 ydvlviGggpsGaaaaetLakag 23
                 ydv+ +Gggp+G aaa+ L++  
  MMETSP1174-20130828|11475_1  4 YDVVTVGGGPAGLAAAIRLKQRA 26
                 89*****************9875 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0064
    TIGR02023 262 dservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksgdatd 309
                  ++   +LvG +aG+       G + a+ksG +a ea+ + l  +d+++
  MMETSP1174-20130828|11475_1 318 TFPGGALVGCSAGFLNSVKIKGSHTAIKSGMVAGEAVYDLLT-ADEEK 364
                  5555689********************************999.54444 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.6e-06    0.0012       1      32 [.       5      42 ..       5      47 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.6e-06
    TIGR04018  1 dviiiGaGPiGlaaaieakka......glsyliiekga 32
                 dv+ +G+GP Glaaai +k++      +ls+ ++ekga
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKQRaleqgtDLSVCVVEKGA 42
                 899**************998622222256678888875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   1.1e-05    0.0017       1      37 [.       6      48 ..       6      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
    TIGR03467  1 vvvvGgGlAGLaAAveLaraG......vrvtllEarrqlGGRa 37
                 vv vGgG AGLaAA++L ++       + v ++E + +lG   
  MMETSP1174-20130828|11475_1  6 VVTVGGGPAGLAAAIRLKQRAleqgtdLSVCVVEKGAELGAHI 48
                 789**************99877777888999999999999765 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.046       7.6       3      22 ..       6      25 ..       4      34 .. 0.84
   2 !    9.4   0.0   0.00051     0.084     243     311 ..     290     361 ..     276     373 .. 0.84
   3 ?   -3.5   0.0       4.4   7.2e+02     109     142 ..     410     445 ..     388     459 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.046
    TIGR02028  3 vavvgggpagasaaetlaka 22
                 v  vgggpag +aa  l + 
  MMETSP1174-20130828|11475_1  6 VVTVGGGPAGLAAAIRLKQR 25
                 778***********988775 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00051
    TIGR02028 243 aakvaggkiirveahpipe...hprprrvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlg 311
                   ++++gg+ i   a  + e   h  pr      alvg +ag++     +g + a ksg + +ea+ +   + 
  MMETSP1174-20130828|11475_1 290 MKHLEGGECISYGARALNEggyHAIPRLTFPGGALVGCSAGFLNSVKIKGSHTAIKSGMVAGEAVYDLLTAD 361
                  567999*******999998777999***************************************99865543 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 4.4
    TIGR02028 109 tlinglvlklelped..addpytlhyveedktgasg 142
                   li+glv++          +p+t+h ++ d+  +s+
  MMETSP1174-20130828|11475_1 410 GLIPGLVYSAASAFFlkGREPWTFHNTKPDSEKTSA 445
                  578888887766543226789999999999554443 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   2.5e-05    0.0041       1      33 [.       5      43 ..       5      51 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.5e-05
    TIGR01790  1 DliviGgGlAglaiAlela......kpglrvqlieaapk 33
                 D++ +GgG+Agla A +l+        +l+v+++e  ++
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKqraleqGTDLSVCVVEKGAE 43
                 99****************955554445888999887665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.1e-05    0.0051     212     236 ..       3      27 ..       1      65 [. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.1e-05
    TIGR03140 212 kydvlvvGgGPagaaaaiyaarkGl 236
                  +ydv+ vGgGPag aaai   ++ l
  MMETSP1174-20130828|11475_1   3 EYDVVTVGGGPAGLAAAIRLKQRAL 27 
                  7*****************7665544 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00011     0.018       1      24 [.       4      27 ..       4      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00011
    TIGR01292  1 ydviiiGaGpaGltaaiYaaranl 24
                 ydv+ +G+GpaGl+aai  ++  l
  MMETSP1174-20130828|11475_1  4 YDVVTVGGGPAGLAAAIRLKQRAL 27
                 79***************7766554 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013     0.021       4      44 ..       5      49 ..       2      60 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
    TIGR00562  4 kvvvvGgGisGLciayalekerp....dvelvlvEakdRvGGkiy 44
                 +vv vGgG +GL++a +l+++      d+ + +vE+    G +i 
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKQRALeqgtDLSVCVVEKGAELGAHIL 49
                 89****************998667888999******999998885 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00016     0.026       1      35 [.       4      40 ..       4      58 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
    TIGR01989  1 lDvvivGgGlvGlalAaalkknpslk..dkkvlllda 35
                 +Dvv vGgG++Gla A  lk+    +  d++v +++ 
  MMETSP1174-20130828|11475_1  4 YDVVTVGGGPAGLAAAIRLKQRALEQgtDLSVCVVEK 40
                 8******************998654423888888887 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00022     0.036       1      23 [.       4      26 ..       4      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00022
    TIGR03378  1 fDviiiGgGlaGlscalrlaeaG 23
                 +Dv+ +GgG aGl++a+rl+++ 
  MMETSP1174-20130828|11475_1  4 YDVVTVGGGPAGLAAAIRLKQRA 26
                 9*****************98764 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3    0.0004     0.066      52     101 ..     508     554 ..     506     557 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0004
    TIGR01971  52 kvCpaeaikvvkaeeekgkrrlkkyeinlgrCifCglCeevCPtdaivlt 101
                  + Cpa   + ++ e+e+g+r      in  +C++C  C+   P + i+ t
  MMETSP1174-20130828|11475_1 508 QFCPAGVYEYTEDENEAGERD---LVINAQNCLHCKTCDIKTPSNYIQWT 554
                  678988777777777777765...569************99999998866 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00044     0.072       1      36 [.       5      45 ..       5      54 .. 0.74
   2 ?   -2.8   0.0       2.6   4.3e+02     131     171 ..     115     156 ..     112     169 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00044
    TIGR01813  1 dvvvvGsGlAGlsaaleakkagla.....evvvleKapviG 36
                 dvv vG G AGl+aa+++k++ l+     +v v+eK + +G
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKQRALEqgtdlSVCVVEKGAELG 45
                 89**************9998654311122677888866655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.6
    TIGR01813 131 eivqklskkakkegvelrlnskvedlikddqg.qvtGvkvke 171
                  ++v+ l ++a++ gve+     + +++  ++g  v+Gv  ++
  MMETSP1174-20130828|11475_1 115 QLVRWLGDQAEELGVEIYPGFAASEVLYSEDGsAVVGVATRD 156
                  678899999999999999998888877766662699999887 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00028     0.045       2      26 ..       3      27 ..       2      38 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00028
    TIGR01816  2 kfdvvvvGaGGaGlraalelakegl 26
                 ++dvv vG+G aGl aa++l ++ l
  MMETSP1174-20130828|11475_1  3 EYDVVTVGGGPAGLAAAIRLKQRAL 27
                 7******************998866 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00034     0.056      30      65 ..       3      42 ..       1      58 [. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00034
    TIGR01373 30 eydviivGgGGhGlatayyl...akehGit.nvavlekgw 65
                 eydv+ vGgG  Gla+a  l   a e G    v v+ekg 
  MMETSP1174-20130828|11475_1  3 EYDVVTVGGGPAGLAAAIRLkqrALEQGTDlSVCVVEKGA 42
                 8****************99933345677643799999984 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00041     0.068       5      25 ..       4      24 ..       2      54 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00041
    TIGR03143  5 ydlvviGgGpaglsaGiyagr 25
                 yd+v +GgGpagl+a i + +
  MMETSP1174-20130828|11475_1  4 YDVVTVGGGPAGLAAAIRLKQ 24
                 9***************97643 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2   0.00033     0.054       1      34 [.       6      45 ..       6      51 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
    TIGR02734  1 avViGaGlgGLAlAirLaa....aG..ievtvlekrdkpG 34
                 +v +G+G +GLA+AirL++    +G   +v v+ek +++G
  MMETSP1174-20130828|11475_1  6 VVTVGGGPAGLAAAIRLKQraleQGtdLSVCVVEKGAELG 45
                 5789*************76222245224688999998888 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3   0.00053     0.086     170     208 ..       5      49 ..       1      56 [. 0.75

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00053
    TIGR01372 170 DvLvvGaGpaGLaaA....raAaraG..arvilvdeqaeaGGsll 208
                  Dv+ vG+GpaGLaaA    + A ++G  ++v +v++ ae G  +l
  MMETSP1174-20130828|11475_1   5 DVVTVGGGPAGLAAAirlkQRALEQGtdLSVCVVEKGAELGAHIL 49 
                  9*************9444335667773357888888888887765 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00053     0.087       1      32 [.       5      41 ..       5      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00053
    TIGR01984  1 dviivGgglvGlslAlaLsrks.....klkialieak 32
                 dv+ vGgg++Gl+ A+ L++ +     +l++ ++e+ 
  MMETSP1174-20130828|11475_1  5 DVVTVGGGPAGLAAAIRLKQRAleqgtDLSVCVVEKG 41
                 89**************999998888889******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        57  (0.0138957); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.69
# Mc/sec: 1084.61
//
Query:       MMETSP1174-20130828|11477_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1019.92
//
Query:       MMETSP1174-20130828|11480_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-05   18.8   0.0    8.5e-05   18.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-08   8.5e-05      82     240 ..     156     304 ..     137     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.1e-08
    TIGR03903  82 grLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasaeal 240
                  ++  l    +l a h+aG++hR+L P+n+ + a++    a +   G   L    +     +        G+ a +aPe   g +  +++D++a G  +   +t      G s+  +    L      lP    g +L   +R  l+ ++++Ra sa++l
  MMETSP1174-20130828|11480_1 156 VKWALELCVGLRAMHAAGITHRNLNPENVHLGANGS---AVIT--GFQCLKNPRKP--GCQYSNGRANSGTCATTAPEIENGKTGGPEADIWALGCCLYAWMTNP-SKSGLSIGSIRRMPLETSVRHLPARF-GQKLRSAIRMSLQPNPKKRA-SADEL 304
                  44445555689999***************9988775...6665..66677766665..55666666778**************************9999999976.899******99999998888888775.88999999999999999997.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 912.19
//
Query:       MMETSP1174-20130828|11481_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|11484_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 913.77
//
Query:       MMETSP1174-20130828|11486_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1147.29
//
Query:       MMETSP1174-20130828|11487_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-15   53.0   0.0    8.1e-10   36.2   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.025   10.6   0.1      0.044    9.8   0.0    1.6  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   3.9e-13   8.1e-10       1      35 []       3      37 ..       3      37 .. 0.96
   2 !   15.4   0.0   1.6e-06    0.0033       2      24 ..      39      61 ..      38      62 .] 0.91

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 3.9e-13
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++++ is++ k+g++e+Alel++eM+ +g++P++
  MMETSP1174-20130828|11487_1  3 ISFSAAISACRKSGQWEKALELLQEMQLSGLEPNV 37
                 5899*****************************96 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.6e-06
    TIGR00756  2 tyntlisglckagrveeAlelfd 24
                 ++ + is++ k g++e+Alel++
  MMETSP1174-20130828|11487_1 39 SFGAAISACQKGGQWEKALELLQ 61
                 78899***************986 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.1e-05     0.044      90     113 ..       6      29 ..       3      62 .] 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.1e-05
    TIGR03939  90 ealAkAaRnekqwdkAlelyrkll 113
                   a+++A+R+++qw+kAlel ++++
  MMETSP1174-20130828|11487_1   6 SAAISACRKSGQWEKALELLQEMQ 29 
                  578899999999999999988653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1174-20130828|11492_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 479.56
//
Query:       MMETSP1174-20130828|11493_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.47
# Mc/sec: 160.07
//
Query:       MMETSP1174-20130828|11494_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.42
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|11497_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 365.27
//
Query:       MMETSP1174-20130828|11500_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 363.55
//
Query:       MMETSP1174-20130828|11501_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|11499_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.71
# Mc/sec: 329.04
//
Query:       MMETSP1174-20130828|11502_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-41  140.2   0.1      2e-41  140.1   0.1    1.0  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
      7e-21   72.7   0.1    8.6e-21   72.4   0.1    1.1  1  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    5.2e-17   60.3   0.0    5.7e-17   60.1   0.0    1.1  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    3.1e-08   31.1   0.1    3.7e-08   30.8   0.0    1.1  1  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    4.7e-08   31.1   0.0      6e-08   30.7   0.0    1.2  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    2.5e-07   28.6   0.0    3.3e-07   28.1   0.0    1.3  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    3.4e-07   28.1   0.0      5e-07   27.5   0.0    1.2  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    4.3e-06   24.2   0.0      6e-06   23.7   0.0    1.2  1  TIGR01261 hisB_Nterm: histidinol-phosphatase
    5.6e-06   23.8   0.1    7.9e-06   23.3   0.0    1.2  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
      4e-05   21.0   0.0    5.6e-05   20.5   0.0    1.2  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    5.4e-05   20.5   0.0    5.4e-05   20.5   0.0    1.2  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
     0.0012   16.4   0.0     0.0019   15.7   0.0    1.3  1  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
     0.0038   14.7   0.0     0.0053   14.2   0.0    1.2  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
     0.0062   14.2   0.0     0.0084   13.7   0.0    1.2  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.1   6.9e-44     2e-41      95     279 .]       1     184 [.       1     184 [. 0.92

  Alignments for each domain:
  == domain 1    score: 140.1 bits;  conditional E-value: 6.9e-44
    TIGR01452  95 GlreeldekGiryvGdpsekdkkaarksgefmkle..edvgavvvGydkhfdyvklrkasaylre.pgvllvatnrdevtplsdeseipgaGslvaaiktasgre.plvvGkPsdfmleyikeklsidPartlmvGdrletdilfGkdgGlktvlvlsGvsrleeiqevlaaedddlvPdyvvesladl 279
                  G+ eel ++Gi + G    ++k  ++   e mk++    v av+vG d  ++y+kl +a ++++  pg++l+atn d++ p +d +  +g G +  a++ a++r+   v GkPs+ m++ i +  ++d +r +mvGdrl+tdi fG +gGl+tvlv+sGv+  e+ +e+ aa +   +Pdyv++ ++ l
  MMETSP1174-20130828|11502_1   1 GMSEELTNAGILHYGLEHSGKKGMPT--SEEMKQDgsGGVAAVLVGLDLEINYYKLTYALNCVKYnPGCVLIATNLDTTFPSAD-VLGAGGGVIGRALEVATNRKlDAVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVT--EKDEEYAAASNPVAIPDYVLPRIGSL 184
                  899*************9999999998..45565551157************************977**************9887.567899************9845788***************************************************..88899999999999*******99876 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   2.9e-23   8.6e-21     110     239 ..      38     170 ..      13     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 2.9e-23
    TIGR01457 110 pdyvvvGldraisyeklaka..alairkGakfistngdlaipterGllpGnGsliavlevatgvk.pvviGkpeaiilekalkrlGtekeetllvGdnyatdilaGidaGidtllvhtGvtkkeelkdkeakp 239
                   + v+vGld +i+y kl+ a  ++  + G  +i+tn d + p+   l  G G +   levat+ k   v Gkp+  +++  +k+  ++++  ++vGd  +tdi  G   G+ t+lv +Gvt+k+e      +p
  MMETSP1174-20130828|11502_1  38 VAAVLVGLDLEINYYKLTYAlnCVKYNPGCVLIATNLDTTFPSADVLGAGGGVIGRALEVATNRKlDAVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVTEKDEEYAAASNP 170
                  56799***********866622666678**********************************98845789***************************************************998866665555 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.9e-19   5.7e-17     126     246 .]      37     156 ..       2     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1.9e-19
    TIGR01460 126 iqaavlvgepsdlsydelakaakllseg.kvpfiaaneeklerlgdgafrlglgsilekikeksgree.ivvGKPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLvltG 246
                   +aavlvg + +++y++l +a ++++ +  + +ia+n  +++  +  ++ +g g i  +++ ++ r+   v GKPs+ +++++ +    +++r+  +mvGD+l+tD+ ++ + Gl ++Lv +G
  MMETSP1174-20130828|11502_1  37 GVAAVLVGLDLEINYYKLTYALNCVKYNpGCVLIATN-LDTTFPSADVLGAGGGVIGRALEVATNRKLdAVCGKPSQDMMDIIIKTHDLDRSRS--VMVGDRLDTDIDFGTRGGLSTVLVMSG 156
                  579***********************999********.88888889999*****************9989****************99999998..5************************99 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.3e-10   3.7e-08     110     234 ..      39     163 ..      26     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.3e-10
    TIGR01458 110 avvlgeaeesfsyqrlnrafrvlldlekpllialgkgryykrkdGlaldvGpfvkaleyatdikae.vvGkPskeffkealralGvepeeavmiGddlvddvGGaqavGmrgvqvrtGkyrpsdee 234
                  a vl   + + +y +l  a++ +   +  +lia +    +   d l  + G   +ale at+ k   v GkPs+  +   +++  ++  + vm+Gd l  d+    + G+ +v+v +G     dee
  MMETSP1174-20130828|11502_1  39 AAVLVGLDLEINYYKLTYALNCVKYNPGCVLIATNLDTTFPSADVLGAGGGVIGRALEVATNRKLDaVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVTEK-DEE 163
                  55555566678899999999999999999***********************************97256***********************************************998766.555 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     2e-10     6e-08      88     140 ..     104     155 ..      60     156 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2e-10
    TIGR01662  88 kceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlvas 140
                  +  + Kp+  m++ ++k + ++d ++sv+vGD++ tD++++ r Gl tvlv s
  MMETSP1174-20130828|11502_1 104 DAVCGKPSQDMMDIIIKTH-DLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMS 155
                  56688**************.7***************************99865 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.1e-09   3.3e-07      98     147 ..     105     154 ..      60     156 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.1e-09
    TIGR01656  98 cdcrKPkpglilealkrlgvdasrslvvGDr.ldDvqaarkaGaaayvlva 147
                    c KP+ ++++ ++k + +d srs++vGDr ++D+  + + G+   vlv+
  MMETSP1174-20130828|11502_1 105 AVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRlDTDIDFGTRGGLST-VLVM 154
                  5699***************************778*******99997.6665 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.7e-09     5e-07     147     216 ..     106     180 ..      97     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.7e-09
    TIGR02253 147 gveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskkee.....ddvvekpdfeiss 216
                     KP   +  + +k  +++   +vmvGDrl++Di  + + gl tv++  g  +k+e      + v  pd+++ +
  MMETSP1174-20130828|11502_1 106 VCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVTEKDEeyaaaSNPVAIPDYVLPR 180
                  567999999999999******************************999988777766455555666677777655 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     2e-08     6e-06      96     137 ..     102     144 ..      82     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2e-08
    TIGR01261  96 edncacrkPkiklleeylkkekidkersyviGdr.etdlqlae 137
                  + +++c kP  ++++  +k +++d++rs+++Gdr +td+++  
  MMETSP1174-20130828|11502_1 102 KLDAVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRlDTDIDFGT 144
                  55899*****************************889999865 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.7e-08   7.9e-06      91     141 ..     109     159 ..      91     174 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-08
    TIGR01668  91 KkpgkafrralkemgltseqvvvvGDrlfTDvllgnrnGsltilveplvhp 141
                  K+++  +  + k  +l  +  v+vGDrl TD+  g r G+ t+lv ++v  
  MMETSP1174-20130828|11502_1 109 KPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVTE 159
                  777778888889999999999************************998865 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.9e-07   5.6e-05     149     208 ..     106     165 ..     102     173 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.9e-07
    TIGR02254 149 GiekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtvwlnpdrkpkpddia 208
                     kP + + + +++  +l +++++mvGD l++Di  ++  Gl tv++ +    k ++ a
  MMETSP1174-20130828|11502_1 106 VCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVMSGVTEKDEEYA 165
                  5679**********999******************************9888777666655 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.8e-07   5.4e-05     192     241 ..     106     154 ..       6     155 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.8e-07
    TIGR01459 192 yvGkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                    GkP +++ d++ k   + ++ r ++vGD l tDi  + + g+ t+lv+
  MMETSP1174-20130828|11502_1 106 VCGKPSQDMMDIIIKT-HDLDRSRSVMVGDRLDTDIDFGTRGGLSTVLVM 154
                  57**********9986.678899999*********************996 PP

>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.5e-06    0.0019      99     143 ..     102     147 ..      91     177 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.5e-06
    TIGR00213  99 kedcdcrkpkpglllqaakelkidleqsfmvGdkle.dlkaglaak 143
                  k d  c kp   ++   +k + +d ++s+mvGd+l+ d+  g    
  MMETSP1174-20130828|11502_1 102 KLDAVCGKPSQDMMDIIIKTHDLDRSRSVMVGDRLDtDIDFGTRGG 147
                  66789****************************9853665555444 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05    0.0053     129     188 ..     107     167 ..      96     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
    TIGR01454 129 rpkpapdivrealdlldvaaeaavmvgdal.idlasaraagvaavaalwgetdeaellaar 188
                    kp+ d++   ++  d    ++vmvgd l +d+  +   g ++v  + g t++ e  aa 
  MMETSP1174-20130828|11502_1 107 CGKPSQDMMDIIIKTHDLDRSRSVMVGDRLdTDIDFGTRGGLSTVLVMSGVTEKDEEYAAA 167
                  579*************************8769************99998877766433332 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.9e-05    0.0084     137     183 .]     106     153 ..      87     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.9e-05
    TIGR01993 137 lilKPspeayekalreagvdpekaifldD.sarNiaaakalglktvlv 183
                  +  KPs+++++ +++++++d ++++++ D +   i  +   gl tvlv
  MMETSP1174-20130828|11502_1 106 VCGKPSQDMMDIIIKTHDLDRSRSVMVGDrLDTDIDFGTRGGLSTVLV 153
                  567************************993457899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.70
# Mc/sec: 371.46
//
Query:       MMETSP1174-20130828|11503_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.82
# Mc/sec: 144.87
//
Query:       MMETSP1174-20130828|11505_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-17   58.6   0.1    9.3e-17   58.4   0.1    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      3e-15   54.0   0.1    3.6e-15   53.8   0.0    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.1e-14   49.1   0.1    9.7e-14   48.8   0.1    1.0  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    9.4e-11   38.9   0.2    1.5e-10   38.2   0.1    1.4  1  TIGR03689 pup_AAA: proteasome ATPase


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1     9e-20   9.3e-17     315     402 ..      11     109 ..       2     126 .. 0.67

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 9e-20
    TIGR01243 315 vivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvd...........ldklaevthgfvgadlaalakeaamaalrrllr 402
                   +v+  tnr d +dpal r gr++  +e+  p k +r+eil++  + m     ++             +lae++ g +gadlaa+++ a+ +al r+  
  MMETSP1174-20130828|11505_1  11 TLVVAITNRRDLIDPALLRAGRLEIHVEVESPSKAARAEILRLQLQHMFQRGRLEgvdtmedltavTCELAEMSDGCTGADLAAVVRAASSRALERFSL 109
                  456677777777777777777777777777777777777777777777666555555566666665556777777777777777777777777777654 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   3.5e-18   3.6e-15     263     345 ..      12     105 ..       3     125 .. 0.79

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 3.5e-18
    TIGR01242 263 kviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm....klaedvd....le....elaklteGasGadlkaivteaGmfair 345
                   v+a tnr d++dpallr Gr++  +ev  p++  r eil++  ++m    +l e vd    l     ela++++G++Gadl a+v  a   a+ 
  MMETSP1174-20130828|11505_1  12 LVVAITNRRDLIDPALLRAGRLEIHVEVESPSKAARAEILRLQLQHMfqrgRL-EGVDtmedLTavtcELAEMSDGCTGADLAAVVRAASSRALE 105
                  599**************************************998887332223.33442111322233689***************999888875 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   9.4e-17   9.7e-14     190     273 ..       6     100 ..       2     106 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 9.4e-17
    TIGR01241 190 etnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.......eevdlk....kvarrtpGfsGadlanlvneaa 273
                  ++n+  +v+a tnr d++D+aLlr Gr++ +v v++P  + r eil++ ++++          ++ dl+    ++a++  G +Gadla +v  a+
  MMETSP1174-20130828|11505_1   6 SSNTPTLVVAITNRRDLIDPALLRAGRLEIHVEVESPSKAARAEILRLQLQHMFQRgrlegvdTMEDLTavtcELAEMSDGCTGADLAAVVRAAS 100
                  5778899****************************************988765322223255444444422357899*************98775 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.5e-13   1.5e-10     334     380 ..      11      57 ..       3      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1.5e-13
    TIGR03689 334 viviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                   +v+  +nr dlidPa+lr Grl++ + +e P ++a a+il   l++
  MMETSP1174-20130828|11505_1  11 TLVVAITNRRDLIDPALLRAGRLEIHVEVESPSKAARAEILRLQLQH 57 
                  579999**********************************9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|11506_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1089.85
//
Query:       MMETSP1174-20130828|11510_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   10.7   1.6      0.039   10.6   1.1    1.0  1  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   9.5e-06     0.039     252     288 ..       8      47 ..       2      51 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 9.5e-06
    TIGR01932 252 LseAereariikgegdaeaAklys...dayskdpeFysFl 288
                   +eA+r+a++ k+ +da+aA   s   +  + d e ++F+
  MMETSP1174-20130828|11510_1   8 AAEAKRNAEVAKAVADAKAATTASsddNNLGDDAELFEFY 47 
                  58******************98764445688899999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 136.54
//
Query:       MMETSP1174-20130828|11509_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.95
# Mc/sec: 327.89
//
Query:       MMETSP1174-20130828|11511_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   19.1   0.0     0.0005   18.2   0.0    1.5  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.2e-07    0.0005       2      40 ..      78     113 ..      77     134 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.2e-07
    TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkIlelmkvek 40 
                  kr+ W ++lh  F+ A+  +G    atP+ + ++   ++
  MMETSP1174-20130828|11511_1  78 KRLIWPSNLHLDFILAIFDIGL-RYATPSTVTQVL--QG 113
                  899*******************.*******96654..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1060.04
//
Query:       MMETSP1174-20130828|11516_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 180.62
//
Query:       MMETSP1174-20130828|11508_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-05   22.0  16.1    3.2e-05   21.9   9.8    2.0  2  TIGR00880 2_A_01_02: multidrug resistance protein
    5.7e-05   20.0   5.0    5.7e-05   20.0   3.5    2.1  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00028   18.2   2.7    0.00028   18.2   1.9    2.1  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    0.00035   17.6   8.8    0.00038   17.4   0.2    2.1  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
  ------ inclusion threshold ------
      0.067    9.8   6.9     0.0071   13.0   1.3    1.8  2  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.54   4.4e+02      49      80 ..      45      75 ..      39      98 .. 0.51
   2 !   21.9   9.8   3.9e-08   3.2e-05       3     130 ..      91     238 ..      89     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.54
    TIGR00880 49 snitvliiarilqGfgaaaalvagaaliadii 80
                 s+i+ l+   +  Gf  a + ++  ++i+ ++
  MMETSP1174-20130828|11508_1 45 SSIWPLAPVLFWTGFELAYVTSSF-TMIIAAS 75
                 566666666666666666665554.3333333 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.9e-08
    TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals................snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallalla 130
                   +++ Al  +  + ++g l+d +Gr +vl++g++++ ++ +l+a+                    ++ ++   l G++  a+ + + al+ d+++ee+ s a+  +   +++g  ++ +l a +     + +  +a fl+la+++l+ 
  MMETSP1174-20130828|11508_1  91 VFTSWALCEVCGAVVFGRLSDTIGRLQVLFIGFLLYGAALALCAFFvhdidrlntmgglslgGINWMVYVTAGLFGLADCAVNTQVYALLGDMFPEENSSGAFVAFQFLQNIGGAMSYFLSASVSstayTLVIVQAAFLLLAAVCLAW 238
                  578899999**********************************9999***********9999888999****************************************9999999999999988864446666677777777777664 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.5   6.9e-08   5.7e-05      57     123 ..      92     155 ..      69     162 .. 0.82
   2 ?   -1.2   0.1      0.19   1.6e+02     343     373 ..     160     190 ..     154     208 .. 0.76
   3 ?    0.1   0.4     0.079        65     288     328 ..     194     236 ..     186     240 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 6.9e-08
    TIGR00895  57 llsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgll 123
                    s++L+  v+Ga++fg l+D igR +vl ++ ll ++  +++a+   v ++  l ++ gl lGg+ 
  MMETSP1174-20130828|11508_1  92 FTSWALC-EVCGAVVFGRLSDTIGRLQVLFIGFLLYGAALALCAFF--VHDIDRLNTMGGLSLGGIN 155
                  4577776.579***************************99999875..5666677899999999975 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.19
    TIGR00895 343 lllvilGlfvngaqsgllalmaefYptaiRa 373
                  + + ++Gl+  +  + ++al ++++p ++ +
  MMETSP1174-20130828|11508_1 160 VTAGLFGLADCAVNTQVYALLGDMFPEENSS 190
                  4455788888888999999999999998765 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.079
    TIGR00895 288 alllvllnvGgvlgslllgaladr.lgpk.vlalllllaavfa 328
                  +++ +l n+Gg+++ +l + ++   +    v a++lllaav +
  MMETSP1174-20130828|11508_1 194 VAFQFLQNIGGAMSYFLSASVSSTaYTLViVQAAFLLLAAVCL 236
                  4556677888888887776665441444445666777777654 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.9   3.5e-07   0.00028      44      97 ..      90     144 ..      65     195 .. 0.83
   2 ?    1.2   0.5     0.053        43     118     356 ..     180     211 ..     150     239 .. 0.47

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.5e-07
    TIGR00710  44 ltltlyllglavgqLllGplsDsyGRkpvlLlgllvfals.slvlalsenietll 97 
                  l  t+++l    g  ++G+lsD  GR  vl +g l++ ++ +l   +++ i+ l 
  MMETSP1174-20130828|11508_1  90 LVFTSWALCEVCGAVVFGRLSDTIGRLQVLFIGFLLYGAAlALCAFFVHDIDRLN 144
                  56677888888999*********************99655277777888888875 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.053
    TIGR00710 118 vrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekriqistsvetfllllkdkellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavailvgigvslvlsialalaLeefphvaGtasallgtlrlvlgaivgllvs 356
                  + D+++                                                                                                                                                                                                               +   + + +++ +   +g+ +++ +s
  MMETSP1174-20130828|11508_1 180 LGDMFP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EENSSGAFVAFQFLQNIGGAMSYFLS 211
                  333333...............................................................................................................................................................................................................33333333333333333333333333 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   4.7e-07   0.00038      30      80 ..      81     131 ..      60     138 .. 0.80
   2 !    3.2   2.7    0.0099       8.1     317     397 ..     154     234 ..     129     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.7e-07
    TIGR00883  30 plvallatlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtv 80 
                  +   + a+l +f    l    Ga+vfG+l D +GR ++L+++ ll g + +
  MMETSP1174-20130828|11508_1  81 ENHVEAAVLLVFTSWALCEVCGAVVFGRLSDTIGRLQVLFIGFLLYGAALA 131
                  455555666777777788889***********************9998755 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0099
    TIGR00883 317 sillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaav.giyllllal 397
                  + ++v ++  l+ l+  ++++ + all ++fp e+  +g+ +a+++ + igg+++ +++a++ ++    + v + +lll+a+
  MMETSP1174-20130828|11508_1 154 INWMVYVTAGLFGLADCAVNTQVYALLGDMFPEEN-SSGAFVAFQFLQNIGGAMSYFLSASVSSTAYTLVIVqAAFLLLAAV 234
                  5566666666777777778889999*******997.78999********************998888755541444444444 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   8.7e-06    0.0071     140     174 ..     100     134 ..      85     161 .. 0.79
   2 ?   -1.1   0.4      0.16   1.3e+02     389     416 ..     206     233 ..     144     240 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.7e-06
    TIGR00898 140 LlGslvlGqlsDrfGRkkvLllstlvtavsgvlta 174
                    G++v+G lsD+ GR +vL++  l  ++   l a
  MMETSP1174-20130828|11508_1 100 VCGAVVFGRLSDTIGRLQVLFIGFLLYGAALALCA 134
                  57********************9987765544444 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.16
    TIGR00898 389 aaslllagvallllllvpeelkllrtal 416
                  +  +l a+v++ +  lv+ +  +l +a 
  MMETSP1174-20130828|11508_1 206 MSYFLSASVSSTAYTLVIVQAAFLLLAA 233
                  2222333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 887.26
//
Query:       MMETSP1174-20130828|11517_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 717.02
//
Query:       MMETSP1174-20130828|11520_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|11522_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 787.68
//
Query:       MMETSP1174-20130828|11515_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.61
# Mc/sec: 1194.39
//
Query:       MMETSP1174-20130828|11523_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 267.98
//
Query:       MMETSP1174-20130828|11521_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 514.42
//
Query:       MMETSP1174-20130828|11525_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-24   83.6   1.1    3.4e-24   83.0   0.8    1.3  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
      2e-06   24.8   0.1    2.5e-06   24.5   0.1    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
     0.0095   12.6   0.0      0.011   12.4   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
  ------ inclusion threshold ------
       0.01   13.5   0.2      0.015   12.9   0.1    1.4  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.8   3.3e-27   3.4e-24      18     100 ..      64     152 ..      49     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 3.3e-27
    TIGR02007  18 veakeGetildvalkaeieiehacekscacttchvivrkG.fd...sleeasekeedlldkawGleaesrlscqavvade..dlvveip 100
                  v+a  G+tild a+k++i++e ac +  ac+tchv++ +  f     l+e se+eed+ld awGl  +srl+cq+v+ +e   l+v ip
  MMETSP1174-20130828|11525_1  64 VKATVGDTILDCAHKHDIDLEGACGGELACSTCHVVLSEEwFAkvgELSELSEEEEDMLDLAWGLTDTSRLGCQIVMQKEldGLTVIIP 152
                  45566*******************************9876243222589999***********************99876434888887 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   2.4e-09   2.5e-06      35     117 ..      55     145 ..      35     156 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.4e-09
    TIGR01941  35 kinddeeksltveaGdkllntlaskgifissacGGggscgqcrvrvveg....gg...eilptekshis.kreakegwrlscqvkvkedle 117
                  ++ d     ++++ Gd++l+  ++++i +  acGG+ +c+ c+v++ e+     g   e+ + e++++     + +  rl cq+ ++++l+
  MMETSP1174-20130828|11525_1  55 EMADGVSIPVKATVGDTILDCAHKHDIDLEGACGGELACSTCHVVLSEEwfakVGelsELSEEEEDMLDlAWGLTDTSRLGCQIVMQKELD 145
                  45555566678899******************************9987522223311133444555554134678999*****99999875 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.1e-05     0.011     262     313 ..      50     101 ..      28     121 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.1e-05
    TIGR02160 262 qakvtvtldGlsreislsaedesvldaalraradlPfackgGv.cgtcrakvl 313
                  + k   ++dG s + +  +  +++ld+a +   dl  ac g + c+tc++ + 
  MMETSP1174-20130828|11525_1  50 SLKFVEMADGVS-IPVKATVGDTILDCAHKHDIDLEGACGGELaCSTCHVVLS 101
                  445555689999.6667777889****************9985499**98765 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.4e-05     0.015      17      77 ..      64     129 ..      47     145 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.4e-05
    TIGR02008  17 ievpddeyildaaeeeGidlpyscraG.acstcaGkvkeGtv....dqsdqsfldddqleegyvlt 77 
                  +++   + ild a ++ idl  +c    acstc   ++e       + s+ s  ++d l+ ++ lt
  MMETSP1174-20130828|11525_1  64 VKATVGDTILDCAHKHDIDLEGACGGElACSTCHVVLSEEWFakvgELSELSEEEEDMLDLAWGLT 129
                  55555678****************86449****998876433111123444445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|11530_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 291.15
//
Query:       MMETSP1174-20130828|11528_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-27   93.9   0.2    2.3e-27   93.6   0.1    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.013   11.7   0.0      0.016   11.4   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   1.1e-30   2.3e-27       3     157 ..      14     167 ..      12     173 .. 0.90

  Alignments for each domain:
  == domain 1    score: 93.6 bits;  conditional E-value: 1.1e-30
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkv.kslfaklnaepiielsaetgknidk 157
                  +ik++++G+++vGK++Ll +++ ++ s+t +  +++ d+  + ie dG ++k++++DTaGqe+f+ i+  y+r ++++l v+d++ +  +++++  ++  +i+++a+   v  il +nK+D  d   +++++ ++l ++  + +++e+sa++   +++
  MMETSP1174-20130828|11528_1  14 QIKLLMIGDSGVGKTCLLLRYANDSFSPTFI-TTIGIDFKIKNIELDGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR-GSFNSIR-NWVSQIKQHAE-VHVNKILIGNKCDMDDqrVVSYEEgQKLCQEFDNMSFFETSAKNDIDVTA 167
                  69***********************889988.99999999999********************************************.*******.***********.****************995666551455566666679*****99877765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.9e-06     0.016      59     194 ..      52     191 ..      43     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.9e-06
    TIGR01393  59 rlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdlei....iPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpaPkgdkeaplkali 194
                  ++k  + dg++ +l++ dt G   f    +  +  ++G ll+ d +      ++ n    +++  e+    i + nk d+    v ++++  +    +d+++    sak+ i++   + ai ++v     ++ ap+k  i
  MMETSP1174-20130828|11528_1  52 KIKNIELDGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRGSFNSIRNWVSQIKQHAEVhvnkILIGNKCDMDDQRVVSYEEGQKLCQEFDNMSFFETSAKNDIDVTAGFVAIAREVKDRIIAQGAPIKNNI 191
                  44555678999***************999999**************99999999998888877655543337788******9999999999999999*************************999999888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      217  (0.052901); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 552.20
//
Query:       MMETSP1174-20130828|11535_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 604.60
//
Query:       MMETSP1174-20130828|11538_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   24.8   0.0     0.0052   12.7   0.1    3.2  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00014      0.58     134     163 ..     121     151 ..     104     152 .. 0.89
   2 !   12.7   0.1   1.3e-06    0.0052     130     159 ..     150     179 ..     145     182 .. 0.91
   3 !    4.1   0.0   0.00049         2     130     154 ..     183     207 ..     178     210 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00014
    TIGR00870 134 alilAihkqnyeivklLlekgasve.arakg 163
                  +l +A ++ n   +k L++ ga+v+ a a g
  MMETSP1174-20130828|11538_1 121 PLFMAGQEGNTDFIKFLVQEGADVNqAVAGG 151
                  999*********************9776665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 1.3e-06
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                   g tal +A+++   e+v lLl+ ga+v a
  MMETSP1174-20130828|11538_1 150 GGSTALWIAAQNGHAECVALLLKAGATVDA 179
                  589************************985 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.00049
    TIGR00870 130 kgitalilAihkqnyeivklLlekg 154
                  kg t+l +A+h+   e+v +L++ g
  MMETSP1174-20130828|11538_1 183 KGVTPLSVAVHQAHSECVGALVAGG 207
                  899*******************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1009.54
//
Query:       MMETSP1174-20130828|11537_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   28.5   0.0     0.0011   15.6   0.0    2.1  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    0.00067   17.2   0.0       0.24    8.8   0.0    2.2  2  TIGR00655 PurU: formyltetrahydrofolate deformylase
     0.0059   12.7   0.0       0.23    7.4   0.0    2.1  2  TIGR01693 UTase_glnD: protein-P-II uridylyltransferase
  ------ inclusion threshold ------
      0.012   13.1   0.4      0.018   12.5   0.3    1.3  1  TIGR03753 blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   2.9e-05      0.03     450     512 ..     228     290 ..     209     298 .. 0.88
   2 !   15.6   0.0   1.1e-06    0.0011     429     493 ..     305     368 ..     292     397 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.9e-05
    TIGR01327 450 egilliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmllslDeevseevleeik 512
                  + ++  ++  DkpG+++k+++  +++g N+ + ++ r  +    ++++s+D++ ++++le+i 
  MMETSP1174-20130828|11537_1 228 SHFIHTSYGPDKPGILAKISRSCADFGGNLSESKMLRMGEYFMMMAVVSIDQSKKKGLLEDID 290
                  5555566678*******************************9*****************9986 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.1e-06
    TIGR01327 429 vleekepriveidgfevdlepegilliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggea 493
                  v++    r v +d+ e+d  ++ +   ++  DkpG+ ++v++++ e giNi  m+   +++g+e 
  MMETSP1174-20130828|11537_1 305 VFS-GLRRSVTVDRAEMDADARFMDFEVSGIDKPGITAEVCRAFLELGINIERMETQMEHRGDEV 368
                  555.4678899*******************************************98877777654 PP

>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00023      0.24       7      75 ..     236     300 ..     230     318 .. 0.68
   2 !    6.3   0.0    0.0014       1.4       4      67 ..     330     395 ..     327     410 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00023
    TIGR00655   7 cpdqkGlvakistiiakkganivkndefvdeetkrflarvelelealkleeeelkadlkkalaekeelt 75 
                   pd++G++akis  +a+ g n+ ++       ++ f++ + ++ ++   +++ l++d+++ l   ++++
  MMETSP1174-20130828|11537_1 236 GPDKPGILAKISRSCADFGGNLSESKM--LRMGEYFMMMAVVSIDQS--KKKGLLEDIDSKLGSSMQTS 300
                  59*******************976654..344555555555555544..67777888877776555543 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0014
    TIGR00655   4 lvscpdqkGlvakistiiakkganivkndefvdeetkrflarve..lelealkleeeelkadlkka 67 
                   vs  d++G+ a++     + g ni +++  +++++++ +  ++  l  ++ + ++  l + lkka
  MMETSP1174-20130828|11537_1 330 EVSGIDKPGITAEVCRAFLELGINIERMETQMEHRGDEVFFHMKgvLMSNEYQSTSPVLMQRLKKA 395
                  57889**************************99999876655541144455555666777777773 PP

>> TIGR01693  UTase_glnD: protein-P-II uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0045       4.6     786     818 ..     236     268 ..     222     288 .. 0.89
   2 !    7.4   0.0   0.00023      0.23     774     809 ..     321     356 ..     273     370 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0045
    TIGR01693 786 aldrpGLLaavakileelglsiqsakittlGek 818
                  + d+pG+La++++  +++g ++++ k+  +Ge 
  MMETSP1174-20130828|11537_1 236 GPDKPGILAKISRSCADFGGNLSESKMLRMGEY 268
                  78************************9999985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00023
    TIGR01693 774 taskkatvlEvraldrpGLLaavakileelglsiqs 809
                  +a   +   Ev++ d+pG+ a+v +++ elg++i+ 
  MMETSP1174-20130828|11537_1 321 DADARFMDFEVSGIDKPGITAEVCRAFLELGINIER 356
                  455566778************************975 PP

>> TIGR03753  blh_monoox: beta-carotene 15,15'-monooxygenase, Brp/Blh family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.8e-05     0.018     181     227 ..     118     168 ..     101     191 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
    TIGR03753 181 lYFclwHSlrhvarivrvl.....dsgdakrsllraarkaliltlatlllll 227
                  lYF++++Sl+ v+   +v+     ++++++++++ ++++ ++ t++ +++  
  MMETSP1174-20130828|11537_1 118 LYFPVFYSLKEVVAGGNVMdgmrkYQKNWREDMWALWKVWVPSTIINFTF-S 168
                  8*****************999999999999999999**999999998854.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1211.37
//
Query:       MMETSP1174-20130828|11534_1  [L=849]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-211  702.4   3.3   2.1e-211  701.9   2.3    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
   5.9e-143  474.2   2.8      1e-72  243.2   0.0    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   3.2e-130  433.0   4.7    1.5e-68  229.5   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   1.3e-104  348.5   4.4    9.1e-61  203.9   0.0    3.1  3  TIGR03689 pup_AAA: proteasome ATPase
    2.3e-15   54.0   0.0    1.8e-09   34.6   0.0    2.3  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    4.1e-12   43.6   0.0      2e-06   24.9   0.0    2.9  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      1e-08   32.3   0.6     0.0065   13.2   0.0    3.4  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    4.3e-07   27.2   0.0     0.0011   16.0   0.0    2.4  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    7.2e-06   23.1   0.0    0.00047   17.1   0.0    2.4  2  TIGR02881 spore_V_K: stage V sporulation protein K
    7.7e-06   22.2   1.6       0.11    8.4   0.0    3.8  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.4e-05   21.3   0.0     0.0089   12.9   0.0    2.3  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.3e-05   21.3   0.0       0.19    9.1   0.0    2.8  3  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    3.8e-05   21.1   0.1     0.0072   13.7   0.0    2.4  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    7.5e-05   20.2   0.0      0.096   10.1   0.0    2.5  2  TIGR00678 holB: DNA polymerase III, delta' subunit
    0.00017   19.3   0.1       0.35    8.5   0.0    2.9  3  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0024   14.2   2.7     0.0035   13.6   0.1    2.3  3  TIGR00763 lon: ATP-dependent protease La
     0.0027   15.6   0.1       0.58    8.0   0.0    2.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0028   15.1   0.3      0.061   10.8   0.0    2.4  2  TIGR01351 adk: adenylate kinases
     0.0038   13.7   0.1        0.1    8.9   0.0    2.4  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0039   14.3   0.1       0.28    8.2   0.0    2.5  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
  ------ inclusion threshold ------
      0.013   13.2   0.0       0.23    9.2   0.0    2.3  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.029   11.2   0.0       0.53    7.1   0.0    2.3  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.035   10.4   0.0       0.17    8.1   0.0    1.9  2  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  701.9   2.3  1.2e-213  2.1e-211      19     730 ..      91     838 ..      83     840 .. 0.89

  Alignments for each domain:
  == domain 1    score: 701.9 bits;  conditional E-value: 1.2e-213
    TIGR01243  19 vridrrtaeelgvepgdvveiekgerkavaivyrsflddkgkgiirldgylrknagvaigdrvkvkraevk...eakkvvlaptqkirlg....rdfedfvkekl...lgkvlskgekvvvsvlegelklvvvsttpag.........ivrv...teatevelkeeaveeeket.kvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargad.lseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekei..............lkdl.kvkkkdflealkkvkpsvskedlrvyeklakelk 730
                  + +   +++ l +e+  v+++++  r+ +   +r+  +       rl     +n+ +  gd v+++    +    a kv lap  ++  g    ++  ++vke+l    g +l  g++   +  eg++++ v++   ag          v+v   +e te+ + e+ ++   +     evty d+gg ++a+  irelve pl h elfe +g+ pp+gvl+ g  gtgktll+ka+ane+g +   ingpe+m++  gese +lr+ fkea +nap++i++de+d+iapkr+++ gevekr+v+qlltlmdglk+  +v+vi atnr +a+dpalrr grfdrei++g+p  egr  ilqi+t+nm la+dvdl+++a+ +hgfvg+dla l+ +aa++a+r  +  g+id++ +++ +++l+ ++v ++ f  a    +ps lr+  vevp+vkwediggle+ k+el+e ve+p+++   fe++g+rp +gvl++gppg gktllaka+a+e +anf++++gpe+l+ w gese ++r++f kar aap+i+f+de+d+ia +r  +  ++   dr++nq+l+e+d +  +++v vi+atnrpdild a+ rpgrld+li++p pd+ +r+ if+   r+ p+aedv +e la  teg++ ad++ +++ aa +a+re++ +  +ekl + e+                ++ +  +++ +f+ea+   + sv   ++++y+++ak++k
  MMETSP1174-20130828|11534_1  91 IELSSAQMKALDIESDTVMKLKGKRRTWTVCTVRAAKKKTAATSARLSKATLRNLRLNDGDIVRLEEKYTDtppSAAKVTLAPFSDTLEGaddaEERAELVKEHLgklDGCPLRVGDHFFTTTDEGDVEWKVLALEKAGdeeeededtDVKVallAEDTEIVMGEDLLDRSDDDdTYNEVTYADVGGCEKAMADIRELVETPLLHAELFEAVGLPPPHGVLIHGASGTGKTLLTKAIANEVGVFTKIINGPEVMARKSGESESNLRDAFKEARDNAPAMILLDEVDSIAPKRDKAGGEVEKRMVSQLLTLMDGLKKNDNVVVIAATNRANAIDPALRRFGRFDREIDMGIPTEEGRLSILQIKTKNMKLADDVDLEQIAQDSHGFVGSDLAQLTLDAALRAVRDQM--GNIDIDCDSLDQDMLDGIRVCQHHFLAAADACNPSSLRDSAVEVPDVKWEDIGGLEDTKRELKELVEFPVQFGAKFEHFGMRPSRGVLFYGPPGCGKTLLAKAIANECKANFLSIKGPELLTMWFGESESNVRNLFDKARAAAPCILFFDEMDSIAKSRAGSgGGSDAGDRVMNQILAEIDVV-SQRNVFVIGATNRPDILDTAITRPGRLDQLIYIPLPDHPSRVSIFQATLRKSPIAEDVTFELLADVTEGFSAADVAEICQRAAKNAIREAIAADEEEKLLVAEEGDeyleleegeeedewVDPVpCITRAHFEEAMSYARKSVPDSEIQRYNEFAKKMK 838
                  5667788999*****99***9955555455556777777788899**999999***********9876644222699******88776651111445689999652215789*******99988887777776655444111111122244311267788888888887766554789*********************************************************************************************************************************************************************************************************************************976..59***********************************************************************************************************************************************************9965515667**************65.6789***************************************************************************************888888886654432447888888888876665379****************************9876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.2   1.0     5e-71   8.9e-69     117     352 ..     268     500 ..     244     514 .. 0.94
   2 !  243.2   0.0   5.6e-75     1e-72     114     347 ..     538     769 ..     526     781 .. 0.95

  Alignments for each domain:
  == domain 1    score: 230.2 bits;  conditional E-value: 5e-71
    TIGR01242 117 pevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvv.gselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvt 352
                   ev+y d+GG ek + +ire ve pl + elfe vG+ pp Gvl++G  GtGktll+ka+a+e+   f +++ g e++ +  Ge  + +r+ fk a++ ap++i++de+d+ia kr +  ++G+ e +r + qll+ +dG++  +nv viaatnr + +dpal r Grfdr i++ +p++eGrl il+i+t++mkla+dvdle++a+ ++G++G+dl  ++ +a + a+r++  ++ 
  MMETSP1174-20130828|11534_1 268 NEVTYADVGGCEKAMADIRELVETPLLHAELFEAVGLPPPHGVLIHGASGTGKTLLTKAIANEVGV-FTKIInGPEVMARKSGESESNLRDAFKEARDNAPAMILLDEVDSIAPKRDK--AGGEVE-KRMVSQLLTLMDGLKKNDNVVVIAATNRANAIDPALRRFGRFDREIDMGIPTEEGRLSILQIKTKNMKLADDVDLEQIAQDSHGFVGSDLAQLTLDAALRAVRDQMGNID 500
                  68*************************************************************975.66665388****************************************965..567666.68899***************************************************************************************************987775 PP

  == domain 2    score: 243.2 bits;  conditional E-value: 5.6e-75
    TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfairee 347
                   e p+v++ediGGle+  re++e ve+p++    fe+ G+ p +Gvl+yGppG+Gktllaka+a+e +a f+ + g el+  + Ge  + vr++f+ a+  ap+i+f de+d+ia  r  s  +G    +r + q+lae+d      nv vi+atnr+dild a+ rpGr+d+li +plpd   r+ i++   rk  +aedv +e la +teG+s ad+  i+  a  +aire 
  MMETSP1174-20130828|11534_1 538 VEVPDVKWEDIGGLEDTKRELKELVEFPVQFGAKFEHFGMRPSRGVLFYGPPGCGKTLLAKAIANECKANFLSIKGPELLTMWFGESESNVRNLFDKARAAAPCILFFDEMDSIAKSRAGSG-GGSDAGDRVMNQILAEIDVVSQ-RNVFVIGATNRPDILDTAITRPGRLDQLIYIPLPDHPSRVSIFQATLRKSPIAEDVTFELLADVTEGFSAADVAEICQRAAKNAIREA 769
                  578****************************************************************************************************************9998876.5566789***********9865.59************************************************************************************97 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   1.4   5.4e-63   9.6e-61      50     286 ..     267     501 ..     254     516 .. 0.94
   2 !  229.5   0.0   8.7e-71   1.5e-68      49     280 ..     539     769 ..     525     784 .. 0.94

  Alignments for each domain:
  == domain 1    score: 203.8 bits;  conditional E-value: 5.4e-63
    TIGR01241  50 kvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286
                   ++vt++dv G+++a  ++ e+v+  L +++ f+++G   P+Gvl+ G+ GtGktLl ka+a e gv    i G + +    G   s +rD f++a+ naP++i++De+D++  kr ++ g   +   + + qlL+ mDG+++n++v+v+aatnr++ +D+aL r GrfDr++ +  P  +gr +il++ +k++kla++vdl+++a+   Gf G+dla l  +aal a+r++  ++++
  MMETSP1174-20130828|11534_1 267 YNEVTYADVGGCEKAMADIRELVETpLLHAELFEAVGLPPPHGVLIHGASGTGKTLLTKAIANEVGVFTKIINGPEVMARKSGESESNLRDAFKEARDNAPAMILLDEVDSIAPKRDKA-G--GEVEKRMVSQLLTLMDGLKKNDNVVVIAATNRANAIDPALRRFGRFDREIDMGIPTEEGRLSILQIKTKNMKLADDVDLEQIAQDSHGFVGSDLAQLTLDAALRAVRDQMGNIDI 501
                  579********************865999**************************************9999**********************************************93.3..34556789****************************************************************************************************9888765 PP

  == domain 2    score: 229.5 bits;  conditional E-value: 8.7e-71
    TIGR01241  49 ekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarkn 280
                  e + v+++d+ G++++k+el+e+v+f ++   kf+++G +  +Gvl++GpPG GktLlaka+a e +  f+si G +++ m+ G   s vr+lf++a+ +aPci+f De+D++ ++r+ g ggg d  ++ +nq+L+e+D  ++  +v v+ atnrpd+LD+a+ rPGr+D+ + + +Pd   r +i++  ++k  +ae+v  + +a  t Gfs ad+a ++  aa  a r+ 
  MMETSP1174-20130828|11534_1 539 EVPDVKWEDIGGLEDTKRELKELVEFpVQFGAKFEHFGMRPSRGVLFYGPPGCGKTLLAKAIANECKANFLSIKGPELLTMWFGESESNVRNLFDKARAAAPCILFFDEMDSIAKSRA-GSGGGSDAGDRVMNQILAEIDVVSQ-RNVFVIGATNRPDILDTAITRPGRLDQLIYIPLPDHPSRVSIFQATLRKSPIAEDVTFELLADVTEGFSAADVAEICQRAAKNAIREA 769
                  56789*********************77899*************************************************************************************96.68999****************8765.6799*****************************************************************************9999875 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.3   5.1e-44   9.2e-42     178     394 ..     269     471 ..     265     513 .. 0.86
   2 !  203.9   0.0   5.1e-63   9.1e-61     174     387 ..     538     736 ..     512     740 .. 0.93
   3 ?    2.7   0.1     0.049       8.8     439     470 ..     750     783 ..     738     802 .. 0.66

  Alignments for each domain:
  == domain 1    score: 141.2 bits;  conditional E-value: 5.1e-44
    TIGR03689 178 dvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl..eedlaeadgd 394
                  +vtyad+GG ++ +  ir+ ve P+lh el+++ +l pP+Gvl++G  G+Gktl+ ka+an ++  +            i GPe++ +  Ge+e ++r  f+ ar++a    P ++++de+ds+   r      +ve  +v qll+ +dG+++ +nv+vi a+nr + idPa+ r Gr+d  i ++ P +e+   il+    +++ l  + dl +   d
  MMETSP1174-20130828|11534_1 269 EVTYADVGGCEKAMADIRELVETPLLHAELFEAVGLPPPHGVLIHGASGTGKTLLTKAIANEVGVFT----------KIINGPEVMARKSGESESNLRDAFKEARDNA----PAMILLDEVDSIAPKRDK-AGGEVEKRMVSQLLTLMDGLKKNDNVVVIAATNRANAIDPALRRFGRFDREIDMGIPTEEGRLSILQIKT-KNMKLadDVDLEQIAQD 471
                  79**********************************************************9887633..........2379********************9999765....9***********999976.5689*********************************************************999997543.33333114445444444 PP

  == domain 2    score: 203.9 bits;  conditional E-value: 5.1e-63
    TIGR03689 174 eevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr.GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                   evPdv ++diGGl++   ++++ ve+P ++ + +++++++p +Gvl+yGPPGcGktl+aka+an            k+ fl+ikGPell  + Ge+e ++r +f++ar +a    P ++ffdemds+ + r GsG  sd    v+ q+lae+d v   +nv viGa+nr d++d ai rPGrld  i i  Pd+ +   i++  l ++ P++ed
  MMETSP1174-20130828|11534_1 538 VEVPDVKWEDIGGLEDTKRELKELVEFPVQFGAKFEHFGMRPSRGVLFYGPPGCGKTLLAKAIANE----------CKANFLSIKGPELLTMWFGESESNVRNLFDKARAAA----PCILFFDEMDSIAKSRaGSGGGSDAGDRVMNQILAEIDVVS-QRNVFVIGATNRPDILDTAITRPGRLDQLIYIPLPDHPSRVSIFQATLRKS-PIAED 736
                  49*************************************************************994..........4678*****************************876....***************989********************886.59******************************************9999875.77666 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.049
    TIGR03689 439 sGamlanivdrakkaaikdeleg..gqkglraeh 470
                  s a +a+i +ra k+ai++++++  ++k l ae+
  MMETSP1174-20130828|11534_1 750 SAADVAEICQRAAKNAIREAIAAdeEEKLLVAEE 783
                  67999****************6511333444444 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     2e-06   0.00036     315     447 ..     310     437 ..     277     498 .. 0.77
   2 !   34.6   0.0   9.9e-12   1.8e-09     311     425 ..     579     692 ..     542     702 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2e-06
    TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlg.vlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGleaidtLLarlE..ndRdrlvviiAGYe.kdlDklLevneGLrsRFtrkie 447
                  +l+ G  GtGkt + +++a+    ++ +++ p        +++++  gese +  +   +a +    ++ lDE+ ++  krd+a+ ++   ++ +LL  ++   + d++vvi A  + +++D  L       +RF r+i+
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTkIINGP--------EVMARKSGESESNLRDAFKEARDNapaMILLDEVDSIAPKRDKAGGEVEKRMVSQLLTLMDglKKNDNVVVIAATNRaNAIDPALRR----FGRFDREID 437
                  5677***************9875554244444........56788899999999999999998633369*******************************943466888888887652456655542....246666666 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 9.9e-12
    TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek..rdgakddfGleaidtLLarlEndRdrlv.viiAGYe 425
                   s+ +l+ GPPG Gkt +A+++a+         k +   ++  +l++ + gese +  +l dka      +lF+DE+ ++ +   + g + d G  +++++La ++   +r v vi+A  +
  MMETSP1174-20130828|11534_1 579 PSRGVLFYGPPGCGKTLLAKAIANEC-------KANFLSIKGPELLTMWFGESESNVRNLFDKARAaapCILFFDEMDSIAKSraGSGGGSDAGDRVMNQILAEIDVVSQRNVfVIGATNR 692
                  57889******************984.......77888999999******************986522269*********998345567899************99766554415566554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05    0.0023      33      67 ..     310     344 ..     305     380 .. 0.91
   2 ?   -1.0   0.0      0.88   1.6e+02     132     193 ..     412     474 ..     404     506 .. 0.69
   3 !   24.9   0.0   1.1e-08     2e-06      33      67 ..     583     617 ..     545     656 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                  vl+ G  G Gkt l+k ia+e+gv  ki++gp++ 
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTKIINGPEVM 344
                  89******************************864 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.88
    TIGR00635 132 lvGattraGkltsPLrdrfgiver...lefYseeeleeivkrsaklleleieeeaaleiarrsrg 193
                  ++ at ra ++ +P   rfg   r   +   +ee   +i+++++k ++l  ++ + ++ia+ s+g
  MMETSP1174-20130828|11534_1 412 VIAATNRANAI-DPALRRFGRFDReidMGIPTEEGRLSILQIKTKNMKLA-DDVDLEQIAQDSHG 474
                  56666666555.66667777554321144556666778888888888875.56677888888876 PP

  == domain 3    score: 24.9 bits;  conditional E-value: 1.1e-08
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                  vl+yGPPG Gkt lak ia+e +++   ++gp+l 
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANECKANFLSIKGPELL 617
                  89******************************984 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.7e-05    0.0065      31      64 ..     298     331 ..     292     337 .. 0.84
   2 ?    2.3   0.0     0.074        13     127     178 ..     364     421 ..     347     427 .. 0.70
   3 !   12.4   0.0   6.1e-05     0.011      37      66 ..     576     606 ..     570     615 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.7e-05
    TIGR02928  31 lkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64 
                  l +++    p+ vli G +GtGKt+ tk++ +e+
  MMETSP1174-20130828|11534_1 298 LFEAVGLPPPHGVLIHGASGTGKTLLTKAIANEV 331
                  556666678999*****************99986 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.074
    TIGR02928 127 redsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisndlkf 178
                  ++  ++i LDE+D++  k+++        ++ +L+ +  +g  ++ +v vi+ +n ++ 
  MMETSP1174-20130828|11534_1 364 DNAPAMILLDEVDSIApKRDKAGgevekrMVSQLLTLM-DGLKKNDNVVVIAATNRANA 421
                  45567999*******75444433677777777787774.44444578888888887765 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 6.1e-05
    TIGR02928  37 gsrpsn.vliyGktGtGKtavtkkvlkelee 66 
                  g+rps+ vl yG++G+GKt+ +k++ +e ++
  MMETSP1174-20130828|11534_1 576 GMRPSRgVLFYGPPGCGKTLLAKAIANECKA 606
                  566654499****************999876 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.9e-06    0.0011     140     298 ..     310     469 ..     305     477 .. 0.81
   2 !    8.4   0.0    0.0012      0.21     140     164 ..     583     607 ..     576     612 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.9e-06
    TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyrsvD.lLLiDDiqflagke.........ktqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevlefia 298
                  ++i+G +G GKT L +Ai+ne+   +     + ++  + +++     +++  ++fke  +++  ++L+D +  +a k+         ++  +++ +++ l +++  +v+++ +  + ++    R+  Rf+  +  d+  p+ e rl+IL+ k++++kl  + + le ia
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFT-----KIINGPEVMARKSGESESNLRDAFKEARDNAPaMILLDEVDSIAPKRdkaggevekRMVSQLLTLMDGLKKNDNVVVIAATNRANAIDPALRRF-GRFDREI--DMGIPTEEGRLSILQIKTKNMKLADDVD-LEQIA 469
                  79******************998773.....4579999999999**************9998625789******988533333333356678999999999*****************9877775.79*9965..666699********99988777654433.44555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0012
    TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkk 164
                  +++yG  G GKT L +Ai+ne+ ++
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANECKAN 607
                  689*****************98876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.039       6.9      46     150 ..     311     415 ..     305     460 .. 0.75
   2 !   17.1   0.0   2.7e-06   0.00047       8     147 ..     548     686 ..     542     771 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.039
    TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...GvlfideayslarGGekdfG...keaidtlvkemed.kreelvlilaG 150
                  + +G  GtGkt +++ +a   +e++v++k     ++  +++    G++  + r+  k+a      ++++de  s+a   +k  G   k  + +l+  m+  k+++ v+++a 
  MMETSP1174-20130828|11534_1 311 LIHGASGTGKTLLTKAIA---NEVGVFTKI----INGPEVMARKSGESESNLRDAFKEARDnapAMILLDEVDSIAPKRDKAGGeveKRMVSQLLTLMDGlKKNDNVVVIAA 415
                  67899******9999987...589999883....345667777778888888888887754222688999999999888886553336778888888875334445555543 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.7e-06
    TIGR02881   8 lvGleevkelikeiyal.ilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...Gvlfideayslar.....GGekdfGkeaidtlvkemedkreelvli 147
                  + Gle+ k+ +ke+  + ++   k ++ g++ ++ v   +f G PG Gkt +a+ +a+         k +++ ++  +l+  + G++  ++r++  ka      +lf de  s+a+     GG  d G   +++++ e++  ++  v++
  MMETSP1174-20130828|11534_1 548 IGGLEDTKRELKELVEFpVQFGAKFEHFGMRPSRGV---LFYGPPGCGKTLLAKAIANE-------CKANFLSIKGPELLTMWFGESESNVRNLFDKARAaapCILFFDEMDSIAKsragsGGGSDAGDRVMNQILAEIDVVSQRNVFV 686
                  569999999999998874677778888888887765...69************999975.......477888899999**************998876542227******999986445557888999999988888877544443333 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.015       2.6     490     514 ..     310     334 ..     302     347 .. 0.85
   2 ?   -0.9   0.0      0.42        75     259     358 ..     348     451 ..     343     458 .. 0.68
   3 !    8.4   0.0   0.00063      0.11     485     516 ..     578     609 ..     570     617 .. 0.88
   4 !    5.8   0.0     0.004      0.71     257     304 ..     619     666 ..     615     691 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.015
    TIGR02639 490 flfvGptGvGktelakqLaeelgve 514
                   l  G++G Gkt l+k++a+e+gv 
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVF 334
                  5789*******************95 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.42
    TIGR02639 259 rGdfeerlkevveeiekeedailfiDeihtivgagatsggsld...asnlLkPalasGkirciGsttyeeykkifekdkaLsr..rfqk.idveePskeetvkilk 358
                   G+ e  l++  +e +++  a++ +De+  i      +gg+++   +s+lL   l +G  +          ++  + d aL r  rf++ id++ P++e  ++il+
  MMETSP1174-20130828|11534_1 348 SGESESNLRDAFKEARDNAPAMILLDEVDSIAPKRDKAGGEVEkrmVSQLLT--LMDGLKKNDNVVVIAATNRANAIDPALRRfgRFDReIDMGIPTEEGRLSILQ 451
                  5888999999999999999999999999999998888888887333456553..3344333333333333355556677776655675338888888888888886 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00063
    TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                  +P    lf+Gp G Gkt lak++a+e   ++l
  MMETSP1174-20130828|11534_1 578 RPSRGVLFYGPPGCGKTLLAKAIANECKANFL 609
                  688889******************99877765 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.004
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsldasn 304
                   + G+ e  ++++ ++ ++    ilf De+  i  + a+sgg  da +
  MMETSP1174-20130828|11534_1 619 MWFGESESNVRNLFDKARAAAPCILFFDEMDSIAKSRAGSGGGSDAGD 666
                  567999999*********************************999976 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0062       1.1     120     200 ..     310     384 ..     304     403 .. 0.74
   2 !   12.9   0.0     5e-05    0.0089     120     201 ..     583     658 ..     576     685 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0062
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksen 200
                  +l+ G +G+Gktll++++a+e+ v   i +   +  a   Ge   n+     + a  + +     +i +de+d ia k ++
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTKIINGPEV-MARKSGESESNL-----RDAFKEARDNAPAMILLDEVDSIAPKRDK 384
                  677899****************998888877665.466777776663.....33333444445567888888888877665 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 5e-05
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksena 201
                  +l+ Gp G Gktlla+++a+e +  f       l    + Ge   n+  +l+++a      a   i++ de+d ia+   ++
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANECKANFLSIKGPELLT-MWFGESESNV-RNLFDKAR----AAAPCILFFDEMDSIAKSRAGS 658
                  7889*******************9986555555443.4789987775.67887764....67889**********9976655 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.4   1.1e+03      97     115 ..      62      80 ..      53     104 .. 0.82
   2 !    9.1   0.0    0.0011      0.19      41     140 ..     310     425 ..     295     464 .. 0.64
   3 !    9.1   0.0     0.001      0.19      39      65 ..     581     607 ..     570     656 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.4
    TIGR03420  97 Ddvealagereweealfdl 115
                  D v +++++++we +lf++
  MMETSP1174-20130828|11534_1  62 DPVSDVEEAEAWEPQLFKV 80 
                  88999999999**999986 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0011
    TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagk.....saiylplkelaqllvevlegl..eqaelvalDdvealagerew.....e....ealfdlynrlresgrkllvageaaPaelklr 140
                  + + G+sg+Gk+ L +A+++++    k     +++  +  e ++ l ++++++  ++ +++ lD+v+++a +r++     e     +l+ l+  l+++++ +++a+++ +++++ +
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTKiingpEVMARKSGESESNLRDAFKEArdNAPAMILLDEVDSIAPKRDKaggevEkrmvSQLLTLMDGLKKNDNVVVIAATNRANAIDPA 425
                  6789****************987554311111334334444444445665544114567999*******98875422222222224677778888888888888888888877766 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.001
    TIGR03420  39 rllylwGesgsGksHLLqAacaaaeea 65 
                  r + ++G++g+Gk+ L +A++++++++
  MMETSP1174-20130828|11534_1 581 RGVLFYGPPGCGKTLLAKAIANECKAN 607
                  66789*****************99875 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.022       3.9      24      56 ..     310     342 ..     301     354 .. 0.85
   2 !   13.7   0.0     4e-05    0.0072      22      58 ..     581     617 ..     573     625 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.022
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  v + G +GtGkt l+ ++a++ +    ++nG +
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTKIINGPE 342
                  6678****************9988888888765 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4e-05
    TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                  + v + GP G+Gkt la ++a++ +   + ++G + l
  MMETSP1174-20130828|11534_1 581 RGVLFYGPPGCGKTLLAKAIANECKANFLSIKGPELL 617
                  67899******************99999999987655 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0039      0.69      14      38 ..     307     331 ..     303     352 .. 0.92
   2 !   10.1   0.0   0.00054     0.096      14      37 ..     580     603 ..     572     612 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0039
    TIGR00678  14 ahAlLfaGpeGvGkealaealakal 38 
                  +h +L++G +G+Gk+ l +a+a+++
  MMETSP1174-20130828|11534_1 307 PHGVLIHGASGTGKTLLTKAIANEV 331
                  79*******************9875 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00054
    TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                  +  +Lf+Gp+G+Gk+ la+a+a++
  MMETSP1174-20130828|11534_1 580 SRGVLFYGPPGCGKTLLAKAIANE 603
                  6689*****************986 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0039       0.7       2      34 ..     311     345 ..     310     354 .. 0.85
   2 ?   -2.4   0.0       4.1   7.4e+02     118     150 ..     387     418 ..     351     423 .. 0.56
   3 !    8.5   0.0    0.0019      0.35       3      27 ..     585     609 ..     583     635 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0039
    TIGR01313   2 vlmGvaGsGkstiakelakklg..akfieGDdlhp 34 
                  ++ G++G+Gk+ ++k++a+++g  +k i+G ++ +
  MMETSP1174-20130828|11534_1 311 LIHGASGTGKTLLTKAIANEVGvfTKIINGPEVMA 345
                  578******************98778999977655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 4.1
    TIGR01313 118 hfmkadllesqfeaLeeptadekdvvkvdidqk 150
                    ++  +  sq+ +L    + + +vv++++++ 
  MMETSP1174-20130828|11534_1 387 GEVEKRM-VSQLLTLMDGLKKNDNVVVIAATNR 418
                  4444444.5777777766666668888887765 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0019
    TIGR01313   3 lmGvaGsGkstiakelakklgakfi 27 
                    G+ G+Gk+ +ak++a++ +a+f+
  MMETSP1174-20130828|11534_1 585 FYGPPGCGKTLLAKAIANECKANFL 609
                  56999****************9985 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.9   3.5e+02     358     376 ..     312     330 ..     310     335 .. 0.87
   2 ?   -0.5   0.0      0.39        69     412     438 ..     357     386 ..     353     409 .. 0.67
   3 !   13.6   0.1     2e-05    0.0035     356     383 ..     583     610 ..     565     613 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.9
    TIGR00763 358 lvGPPGVGKtSlaksiAka 376
                  ++G  G GKt l+k+iA+ 
  MMETSP1174-20130828|11534_1 312 IHGASGTGKTLLTKAIANE 330
                  78999************75 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.39
    TIGR00763 412 qglkkvktenP.lillDEiDKlg..ssvrG 438
                  +++k+++ + P +illDE+D ++  ++ +G
  MMETSP1174-20130828|11534_1 357 DAFKEARDNAPaMILLDEVDSIApkRDKAG 386
                  5778888888845799****9997733333 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 2e-05
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvr 383
                  + ++GPPG GKt lak+iA+  + +f+ 
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANECKANFLS 610
                  579****************999998875 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.043       7.6       3      31 ..     310     339 ..     309     363 .. 0.78
   2 !    8.0   0.0    0.0033      0.58       6      30 ..     586     610 ..     582     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.043
    TIGR02173   3 ivisGpPGsGkttvakilaeklsl.klisa 31 
                  + i G  G+Gkt + k +a+++++   i  
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVfTKIIN 339
                  6799****************9984244444 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0033
    TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                   GpPG Gkt +ak +a++   +++s
  MMETSP1174-20130828|11534_1 586 YGPPGCGKTLLAKAIANECKANFLS 610
                  69***************98877665 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.2        35       2      26 ..     310     334 ..     309     365 .. 0.78
   2 !   10.8   0.0   0.00034     0.061       2      29 ..     583     610 ..     582     613 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.2
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglv 26 
                  +++ G+ G+GK    k +a+++g++
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVF 334
                  6899*****************9964 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00034
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                  +++ GpPG+GK   ak +a++++   +s
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANECKANFLS 610
                  789******************9977665 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.071        13     212     232 ..     308     328 ..     300     364 .. 0.90
   2 !    8.9   0.0   0.00058       0.1     214     231 ..     583     600 ..     577     604 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.071
    TIGR00368 212 hnllllGPPGsGktllakrlq 232
                  h +l+ G  G+Gktll k + 
  MMETSP1174-20130828|11534_1 308 HGVLIHGASGTGKTLLTKAIA 328
                  999*************99875 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00058
    TIGR00368 214 llllGPPGsGktllakrl 231
                  +l+ GPPG Gktllak +
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAI 600
                  89*************987 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.054       9.6      37      59 ..     308     330 ..     306     343 .. 0.89
   2 !    8.2   0.0    0.0016      0.28      37      58 ..     581     602 ..     577     609 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.054
    TIGR02397  37 hayLfsGprGvGKTsiArilAka 59 
                  h  L  G+ G+GKT + + +A+ 
  MMETSP1174-20130828|11534_1 308 HGVLIHGASGTGKTLLTKAIANE 330
                  77899*************99976 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0016
    TIGR02397  37 hayLfsGprGvGKTsiArilAk 58 
                     Lf+Gp G+GKT +A+ +A+
  MMETSP1174-20130828|11534_1 581 RGVLFYGPPGCGKTLLAKAIAN 602
                  5679**************9997 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0013      0.23      25      51 ..     310     336 ..     294     343 .. 0.84
   2 ?    0.9   0.0      0.44        79      25      45 ..     583     603 ..     560     610 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0013
    TIGR00150  25 vlLkGdlGaGKttlvkgllkglGiqge 51 
                  vl++G  G+GKt l+k++++++G+ ++
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVFTK 336
                  7899*******************8544 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.44
    TIGR00150  25 vlLkGdlGaGKttlvkgllkg 45 
                  vl +G  G GKt l k+++++
  MMETSP1174-20130828|11534_1 583 VLFYGPPGCGKTLLAKAIANE 603
                  6789999**********9875 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0029      0.53     144     175 ..     307     338 ..     257     345 .. 0.73
   2 ?    1.3   0.0      0.18        31     118     167 ..     552     603 ..     543     608 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0029
    TIGR02788 144 kkniiisGgtgsgKTTflkalvkliPkeeRli 175
                   + ++i G++g+gKT ++ka+ +++    ++i
  MMETSP1174-20130828|11534_1 307 PHGVLIHGASGTGKTLLTKAIANEVGVFTKII 338
                  5679******************9987766666 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.18
    TIGR02788 118 sdadeellellka..gdikeFlklaiaakkniiisGgtgsgKTTflkalvkl 167
                  +d+++el el +   +  ++F +  ++  + ++  G +g gKT + ka+ ++
  MMETSP1174-20130828|11534_1 552 EDTKRELKELVEFpvQFGAKFEHFGMRPSRGVLFYGPPGCGKTLLAKAIANE 603
                  55566666655531123356777788889999****************9876 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.44        78     113     144 ..     310     340 ..     294     362 .. 0.76
   2 ?    8.1   0.0   0.00098      0.17     109     232 ..     579     710 ..     570     714 .. 0.69

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.44
    TIGR00602 113 LLitGPsGCgKsTvikiLsKelgikvqewlNp 144
                   Li G sG gK+   k ++ e g+   + +N+
  MMETSP1174-20130828|11534_1 310 VLIHGASGTGKTLLTKAIANEVGVF-TKIING 340
                  489*****************99974.445555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00098
    TIGR00602 109 kkriLLitGPsGCgKsTvikiLsKelgikvqewlNpvllkeq.kndeketlsleekfsrflsqievfsefllratnklqklGddlqtdkkl..IlvedlP.....nkFyrdtdalrevlrtkyvsegrlp.lv 232
                  + r  L  GP+GCgK+   k ++ e   ++     p ll     + e+++ +l +k     + i  f+e+   a+++    G    +d+ +  Il e +      n+F +      ++l t+ ++ grl  l+
  MMETSP1174-20130828|11534_1 579 PSRGVLFYGPPGCGKTLLAKAIANECKANFLSIKGPELLTMWfGESESNVRNLFDKARAAAPCILFFDEMDSIAKSRAGSGGGSDAGDRVMnqILAE-IDvvsqrNVFVIGATNRPDILDTAITRPGRLDqLI 710
                  66767999**************999998888888887776541556777888888888888888888888888877766665555555433223322.22224667777777777777777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 1.02u 0.21s 00:00:01.23 Elapsed: 00:00:00.86
# Mc/sec: 1303.01
//
Query:       MMETSP1174-20130828|11540_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1038.55
//
Query:       MMETSP1174-20130828|11544_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|11545_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|11542_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|11547_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 177.90
//
Query:       MMETSP1174-20130828|11548_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1465.53
//
Query:       MMETSP1174-20130828|11552_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1174-20130828|11553_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 195.34
//
Query:       MMETSP1174-20130828|11549_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-09   32.1  28.9    7.9e-09   31.6  20.0    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.5e-07   27.4  26.4    2.1e-07   26.9  18.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.04   10.9   7.7      0.017   12.1   2.7    2.1  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
        0.8    6.4  29.3       0.21    8.3  13.3    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  20.0   7.7e-12   7.9e-09     291     558 ..      99     363 ..      92     378 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 7.7e-12
    TIGR02168 291 qelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvvenee 558
                  +  ++e+ +l++e+   +     l+++le+++ +le ++++  e e+++++l+ +l++  ++   +++e +e+ +++ ele ++++  + ++ l+se  +  +++++l++ l+r++ ele+++ ++++ +++ e+l ++le+++aelke +e+  +  +el++++++le+++++l ++ +el+  +++l + ee+l +++++ ++l++  e  +++ e+   + +  sk +     l +l++ ++  eaA+++++   l ++v ++ +
  MMETSP1174-20130828|11549_1  99 YHSNEEVLKLKSELVAESGHVLILQRSLEAVSSELELEKKHTSEIEASVNSLNSQLADSDQKNSIANDESAEKSKKIVELEGKVNDGIAIAQGLSSEKERCYSDKTTLTESLQRMRGELESMTTNHRQSTSQAETLTRDLEAMRAELKESKEQRFKMVRELDQQRTSLEATQKKLDTALAELDSTSSKLAESEESLTHVSEQYQVLQNEYEIIREKAENPDLVEA-ISKSS--SAGLNQLYQSNPAIEAAVNKTVDMLLPSLVEKRVQ 363
                  566677777777777777777788899999999999999999999999999999999998888888888888899999999999999999999999999999999999999999999999999999999999999999999999999999988888888888888888888888888888888888888888888888888888888877666665443332222.22212..24488888888888888888877777777766655 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  18.3     2e-10   2.1e-07     285     508 ..     100     316 ..      92     346 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2e-10
    TIGR02169 285 lgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508
                   ++ee l++k++l   ++++  l+r++++  +ele  +++  ++ea +++l++++++ +++    + e ++ ++++ el+ + ++  a ++ ++ e ++       l e l++++ el+++ +++++ + +++ l+ +l+ ++ael++ +e+  ++  el++ +  +++ ++kl ++ ++l++ +++l + +e l +++++ + l++e++        ++e+ +
  MMETSP1174-20130828|11549_1 100 HSNEEVLKLKSELVAESGHVLILQRSLEAVSSELELEKKHTSEIEASVNSLNSQLADSDQKNSIANDESAEKSKKIVELEGKVNDGIAIAQGLSSEKERCYSDKTTLTESLQRMRGELESMTTNHRQSTSQAETLTRDLEAMRAELKESKEQRFKMVRELDQQRTSLEATQKKLDTALAELDSTSSKLAESEESLTHVSEQYQVLQNEYEI-------IREKAE 316
                  5789999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999977666666666666666666666666666666666666666666666666666666666666666666666666666655555555554.......444443 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.11   1.1e+02     175     262 ..     125     211 ..     104     226 .. 0.69
   2 ?   12.1   2.7   1.7e-05     0.017     156     246 ..     218     308 ..     208     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.11
    TIGR00996 175 glaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqala 262
                  +l++++++l    +  +e+ ++ n++ + lad++++ + ++d+ a+ ++ + + + +++d +a +++ls++ ++  ++  ++L++ l+
  MMETSP1174-20130828|11549_1 125 SLEAVSSELELEKKHTSEIEASVNSLNSQLADSDQKNSIANDESAEKSKKIVELEGKVNDGIAIAQGLSSEKERCYSDK-TTLTESLQ 211
                  5666777777777777777777777777777777777777777777777777777777777777777777766666665.55555555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.7e-05
    TIGR00996 156 nalaealaGqgpqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqv 246
                  + ++++ ++ + q  +l ++l+++ a+l+e+ e+ +++++ l +  ++l +++++ld++l++l ++++ la++++ L    ++ + l ++ 
  MMETSP1174-20130828|11549_1 218 ESMTTNHRQSTSQAETLTRDLEAMRAELKESKEQRFKMVRELDQQRTSLEATQKKLDTALAELDSTSSKLAESEESLTHVSEQYQVLQNEY 308
                  56667777888888999999*******************************************************9999998877665554 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.7     0.015        15     184     251 ..     106     172 ..      92     184 .. 0.69
   2 ?    8.3  13.3    0.0002      0.21     122     240 ..     194     316 ..     170     350 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.015
    TIGR01843 184 rkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaq 251
                   kLk++ + +  ++L l+r+++++++el+ ++++ ++++a +++l+ +l+  +qk+     e+  e +
  MMETSP1174-20130828|11549_1 106 LKLKSELVAESGHVLILQRSLEAVSSELELEKKHTSEIEASVNSLNSQLADSDQKNSIANDES-AEKS 172
                  467777777778888888888888888888888888888888888888888777765443333.3333 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0002
    TIGR01843 122 avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqle.liseelealrkLkekglvsrlelL...elereraelqgelaeleaeleklkaeldeleeklqeleqkfr 240
                   ++e   + +  +++ ++ +r++les++ + +q+ +++e+l+++l+a+r +l+   +++++++r+L ++    +++     ++  e+++++++lae+e +l+ + ++++ l+++++ +++k+ 
  MMETSP1174-20130828|11549_1 194 SEKERCYSDKTTLTESLQRMRGELESMTTNHRQSTSQAETLTRDLEAMRAELKeSKEQRFKMVRELDQQRTSLEATQKkldTALAELDSTSSKLAESEESLTHVSEQYQVLQNEYEIIREKAE 316
                  667777778888999999999*************************99999872556789999999998765444333001445566667788888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:01.45
# Mc/sec: 543.43
//
Query:       MMETSP1174-20130828|11551_1  [L=1094]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-89  298.7   0.0      5e-89  296.9   0.0    1.7  1  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    2.3e-56  189.2   0.3    9.2e-55  183.9   0.2    2.1  1  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
    1.5e-27   94.9   0.0    3.2e-27   93.8   0.0    1.6  1  TIGR00685 T6PP: trehalose-phosphatase
    3.8e-12   44.5   0.0    2.7e-11   41.8   0.0    2.2  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.001   16.5   0.0      0.003   15.0   0.0    1.8  1  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.9   0.0   6.1e-92     5e-89      51     455 ..     257     690 ..     250     691 .. 0.91

  Alignments for each domain:
  == domain 1    score: 296.9 bits;  conditional E-value: 6.1e-92
    TIGR02400  51 ee.ekklkkelegkitlvpvdLseeevdeyYegfsNsvLWPlfHyrldlaeyerk...........efeaYkrvNrlfaekvaellkegdvvwvhDYhllllpamlrelgvenvkiGfFlHiPfpsseilrllPvreellegllaadlvGfqteedaenflsavsrllgletlenkveske....rtvrveafpigidvdkfaeaakkpevkkeiaelreklkgekvilgvdRLDysKGlperlkafeklLeenpewrgkvvlvqiavpsRedveeYqelreeveelvgringefgeldwvpirylnks...vdreeLvalyraadvalvtplrDGmNLVakEyvaaqedkkG............vLiLSefaGAaeeLkeallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeLk 455
                  ++ +++l+++le+k+++vp++L+e++ ++ Y+ f+  vLWP+fH+ l+ ++ e++            + aY++v r+f +++ e+++egd++w+h +hllllp+ l +  v+  kiG FlH+Pfpssei+ +l  re++l+++l+ad +Gf+ +e+a++fl++++r+lgle  ++++  +     r+v ++    g+d+ ++++a+++++v+ke+++l+   +g+++ +g+dR++  KG+p +l afe++Le+n e ++kvvl qi    R + + Y++ ++ev  lv+rin +fg+ +   + y +++   ++ +  ++l ++adv l t++rDG+N    Eyv aq++++G            ++iLS f+  ++ L++al vnp++i++va+ i +++ m++eer  r +  +++++ ++ ++W+++ l++Lk
  MMETSP1174-20130828|11551_1 257 DQiQEELTQTLEEKFHCVPIFLDEKTSHTCYQVFCKGVLWPVFHNLLEVMSTENAavqfsnksgdeGWLAYTTVQRVFKKAIIEHFNEGDLIWIHGFHLLLLPSFLSRGFVA--KIGLFLHTPFPSSEIFCTLSKREDILRSMLNADHIGFHVYEYARHFLTCCRRVLGLEWVHEGTGIHVlyggRKVLISCMHAGMDPSALYKALEDHQVQKEADRLNCLKRGRTMFVGMDRMERLKGVPLKLLAFERFLENNEEYSKKVVLHQIGMSVRARPQDYEQTTAEVRALVKRINERFGDPQEPVVIYDEREesqLPLKDRLGLLSVADVLLSTTVRDGLNRWPFEYVLAQSQQQGpgseyvesrppgIMILSDFTSCTRVLHGALHVNPWQIDQVANQILRSVMMSAEERMDRFKMDVDYVTLNTTATWCRRCLQDLK 690
                  44478889999***********************************998888877778888899989***************************************999998..7******************************************************9988887654435556***********************************889**************************************************************************99988888877511145566689***************************9876432233333333338********************************************************************97 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.2   1.1e-57   9.2e-55      49     483 ..     250     692 ..     247     695 .. 0.91

  Alignments for each domain:
  == domain 1    score: 183.9 bits;  conditional E-value: 1.1e-57
    TIGR02398  49 evdeeeqevfdakmtvpaeeklvvarialskeqvksfyeitskeafwpilhtfpe.......rfqvde....adwevfkkvnkafaeaaaeeaaegatvwvhdynlwlvpgyirqkrpdlkiaffhhtpfpsadvfnilpwreqivesllccdlvGfhipryvenfvaaarslvkvkivskvsvdekfiavGtalaeeevttaldtkdrlvkldaspvGtdperireavaaasveeriekireelagrklilsaervdytkGikellvayerllerreellgkvvlvvaavkaasgmkiyeelqseieelvGrinGrfarvdwtpvrlf....tralpyeelvaffaaadvawitplrdGlnlvakeyvaarglrdG............vlvlsefaGaavelkgavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellaevkev 483
                  +vd+ ++++ + ++t   eek+  + i l ++  ++ y+++ k ++wp++h + e        +q+++    + w  +  v + f +a  e+ +eg ++w+h + l l p ++ +    +ki +f htpfps+++f  l  re+i+ s+l  d +Gfh+  y + f +  r +++++ v+           Gt +       ++ +++r+v ++++  G+dp  + +a++  +v++  +++    +gr + + ++r++  kG+  +l+a+er+le++ee   kvvl  + ++     + ye++ +e+  lv rin rf + +  pv ++     ++lp ++ ++  + adv+  t +rdGln    eyv a+  ++G            +++ls+f+ ++ +l+ga+  np++  ++ + i  ++ m  ee+  r+k   d v  ++   w+ + l+++k+v
  MMETSP1174-20130828|11551_1 250 KVDKVKMDQIQEELTQTLEEKFHCVPIFLDEKTSHTCYQVFCKGVLWPVFHNLLEvmstenaAVQFSNksgdEGWLAYTTVQRVFKKAIIEHFNEGDLIWIHGFHLLLLPSFLSR-GFVAKIGLFLHTPFPSSEIFCTLSKREDILRSMLNADHIGFHVYEYARHFLTCCRRVLGLEWVH----------EGTGI-------HVLYGGRKVLISCMHAGMDPSALYKALEDHQVQKEADRLNCLKRGRTMFVGMDRMERLKGVPLKLLAFERFLENNEEYSKKVVLHQIGMSVRARPQDYEQTTAEVRALVKRINERFGDPQE-PVVIYdereESQLPLKDRLGLLSVADVLLSTTVRDGLNRWPFEYVLAQSQQQGpgseyvesrppgIMILSDFTSCTRVLHGALHVNPWQIDQVANQILRSVMMSAEERMDRFKMDVDYVTLNTTATWCRRCLQDLKNV 692
                  578899*********************************************98751111211223332112146***************************************75.5679*****************************************************9998754..........46654.......789*************************************9999*********************************************99999***********************9775.665552222468************************************999988888888888889*****************************************************************9999876 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   3.8e-30   3.2e-27       1     248 [.     734     996 ..     734     998 .. 0.82

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 3.8e-30
    TIGR00685   1 arkravlfDlDGTl..seivkdPda..av.........vsdellevLqkLaarsdvalaliSGRkllek.lllvklpglvlageHGlelkadgktqdvseleek.ipvlkkaavelreelaey.pgvvlErKkvalalHYRqadpelarkrvkellekilsa.kddfdlkvqdGkavvElkPrdvnKGeivkklleeadvsgisakdvvvyLGDDlTDedaFrvvr..kleselGfksVkidsaekktaAkfalagvaeVleflell 248
                  ++kr++l D+ GT+   e++kd  a  av         + de  ++L +Laa++ +++ ++SG++ +++  +l+++pgl+la+e G  ++   k + +++l    + ++k++   ++e+  e+  gv l + + a+ + +R adp+ a+ + kel ++++   + + +l+v  G   +E++P +++KG+ v  ll+    ++   +d+ +++GDD  De  +  v+  kle ++     + + ++k  aA+  l+++++ ++ l+++
  MMETSP1174-20130828|11551_1 734 SKKRLILLDYGGTIysDEVQKDNIAhfAVatsvakrdkPTDETIQILTDLAANPLNLVYVMSGKEKRDLvEALGQIPGLGLAAEAGYCYR-HPKNNAWEKLVHGdDQSWKHVCRAVMEVYMERtHGVYLQESQSAMVWQFRDADPDFAHLQSKELEDQLKVLlRGNLSLEVIRGADYIEVRPSGISKGHFVSYLLHRMSDKP---PDFCICIGDDASDEGCYPAVKnfKLEINRRASCFTATVGKKPSAAESYLNDISHAIDLLGMM 996
                  5788888888888853245554322111111222222256899**************77*****88886156899***************.667777776655559*************99999******************************9999976425789*****************************999997...79******************95545666666666667799**************99999987 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29   2.4e+02       9      41 ..     674     705 ..     668     721 .. 0.83
   2 !   41.8   0.0   3.3e-14   2.7e-11       2     209 ..     739     948 ..     738     955 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.29
    TIGR01484   9 TLldpklelseelieaLerlrealgvkvvivTG 41 
                  TL++   ++ ++  + L+++++++++k++++TG
  MMETSP1174-20130828|11551_1 674 TLNTTA-TWCRRCLQDLKNVQKDKNHKMYVTTG 705
                  444444.888999999****************9 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3.3e-14
    TIGR01484   2 lffDlDgTLldpk..................lelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklyaealpedvaevllseekelkeieailkslseryvgtfvedkalevaihysgqk.eleqeldskllerlekigirkdleleailsrsnalqkegetllevlpagvdKgkalqalleeln.lkkeeilafGDsgNDe 209
                  +++D+ gT+ +++                   + ++e+i+ L+ l++++   v++ +G++ + + e l q  ++l l+ae g++++ + +  + + l   +++ ++         +a++++  er+ g       +++ + +++++ +  +   ++l + l+++ +  +l le+i          g++++ev+p+g++Kg  +++ll+++   + ++++++GD++ De
  MMETSP1174-20130828|11551_1 739 ILLDYGGTIYSDEvqkdniahfavatsvakrDKPTDETIQILTDLAANPLNLVYVMSGKEKRDLVEALGQ-IPGLGLAAEAGYCYRHPKNNAWEK-LVHGDDQSWK------HVCRAVMEVYMERTHGVYLQESQSAMVWQFRDADpDFAHLQSKELEDQLKVLLR-GNLSLEVIR---------GADYIEVRPSGISKGHFVSYLLHRMSdKPPDFCICIGDDASDE 948
                  677777777777777777777777777777778899*********************************8.45*********************4.4444445555......346666666666666555555778888999988855555555666677777776.688888875.........*****************************************98 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-06     0.003     154     216 ..     884     947 ..     859     949 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.7e-06
    TIGR00099 154 ldkleealkkeeleeelsv.vsssedsieitakgvsKgsalqslaekl.gislenviaiGDseND 216
                   ++le++lk   l+ +ls+ v+ ++d+ie+ + g+sKg+ +++l+ ++ +  ++ +i+iGD+  D
  MMETSP1174-20130828|11551_1 884 SKELEDQLK-VLLRGNLSLeVIRGADYIEVRPSGISKGHFVSYLLHRMsDKPPDFCICIGDDASD 947
                  577888999.88999*******************************7725667889*****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.19s 00:00:00.95 Elapsed: 00:00:00.56
# Mc/sec: 2578.50
//
Query:       MMETSP1174-20130828|11557_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.4   0.1      0.078    9.8   0.0    2.2  2  TIGR02270 TIGR02270: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02270  TIGR02270: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.025     1e+02      59      85 ..      75     101 ..      67     153 .. 0.73
   2 ?    9.8   0.0   1.9e-05     0.078     147     178 ..     237     268 ..     229     309 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.025
    TIGR02270  59 lvsalaeaeepgevaaAvlallaleda 85 
                  l + l+  + p+  + A++al   ++ 
  MMETSP1174-20130828|11557_1  75 LIQLLQSVDSPELQFEAAWALTNIAST 101
                  445555555555555555555555444 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 1.9e-05
    TIGR02270 147 dpGpaleealshedalvlaaalRalgelsrrl 178
                  +  p+l ++lsh+++ v++ alR++g++  + 
  MMETSP1174-20130828|11557_1 237 NVVPRLVQLLSHASPTVVTPALRTIGNIVSGS 268
                  5569*********************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 1678.63
//
Query:       MMETSP1174-20130828|11556_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075    9.6   0.0       0.11    9.0   0.0    1.2  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family


Domain annotation for each model (and alignments):
>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   2.7e-05      0.11       5      51 ..     351     397 ..     348     417 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 2.7e-05
    TIGR00711   5 ialvlalfmavldstivnvalptlaadlgaslsevqWviTsymvana 51 
                    l lal+  +ld  +v+ +++++a++l++ +++      symva +
  MMETSP1174-20130828|11556_1 351 TCLTLALVTRLLDPRVVDTTIRHIASKLAVLSQTALVELCSYMVALG 397
                  56899*************************999999999*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 2231.54
//
Query:       MMETSP1174-20130828|11560_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-09   33.8   0.0    8.6e-09   33.2   0.0    1.2  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    2.7e-08   31.4   0.0    3.9e-08   30.9   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    6.3e-07   26.5   0.0    1.6e-06   25.2   0.0    1.5  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   6.3e-12   8.6e-09       6     205 ..     100     309 ..      95     332 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 6.3e-12
    TIGR01738   6 klvLihGWglnaevfadlveeLsahft..lslvDLPGyGd.saelr....alslaevaeailaqa......pakaiwlGWsLGGLvalhlalthp..dkvrsLvlvasspkfaaredwpegieadvltkfaeqlksdyqktierflaLqtlgsesarqdvralkqallarptPnvqaLqagLellaevDlRralqkisvPvLrlyGqkDalvPak 205
                  ++v ihG+++ ++  ++lv++L++ f+  ++   LPG+G  s++ +     +s+++  ea l++a       +k i++G s GG + + la++ +   +v sL+l++ + ++a    +p  + + +l   +  l +d ++ i+ ++   ++g +      ++ +++  ++  P + a+   +e l  vDl+  +q+++ P L +    D  v  k
  MMETSP1174-20130828|11560_1 100 AVVYIHGFSASRQENDSLVQALRTRFKanVFCARLPGHGGkSETGHelrdDASMEKYFEAALDAAylglelGEKIILVGSSTGGALCTWLAAQPSirPRVDSLILLSPAYCLA-SSAYP--VLSRLLYYTKVLLPKDLANRIRTWIVETAVGPTRIIAPKNRRHKTFWTLTYPSP-AIIHLVETLMIVDLQ-DIQEVTCPALIVGCPTDHAVSWK 309
                  6899**********************73366789****9744443311125789999998887753333336899*****************8652257*******9988886.578**..8888998889999******************99998888888999999999955.556678999999995.69********9988888777655 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.8e-11   3.9e-08       4     110 ..     100     213 ..      97     218 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 2.8e-11
    TIGR03695   4 vlvlLHGflgskedwqalieeleekfsv..lalDLpgHGkskslke..keakdfeeaaqellkellekl.kiekviLvGYSlGGRialalaleape..rleglilesaspGLes 110
                  ++v +HGf  s+++ ++l+++l+++f++   +  LpgHG ++++ +  ++ +++e+  ++ l+     l   ek+iLvG S GG + + la++ +   r+ +lil s  + L+s
  MMETSP1174-20130828|11560_1 100 AVVYIHGFSASRQENDSLVQALRTRFKAnvFCARLPGHGGKSETGHelRDDASMEKYFEAALDAAYLGLeLGEKIILVGSSTGGALCTWLAAQPSIrpRVDSLILLSPAYCLAS 213
                  689*******************98876544999******98766441145567888888877777766734689**************99999887557******998887776 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-09   1.6e-06      31     151 ..     101     226 ..      81     253 .. 0.77
   2 ?   -2.1   0.0      0.24   3.2e+02     215     239 ..     287     311 ..     275     346 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.1e-09
    TIGR03056  31 llllhGagasshsfrklvpllaarfr..vvapdlPGhGftratarfrfslkamaedlakllaa....edl.sPdaviGhsaGaaialrlaldlpvrPravvginaaldnfeGvaGvlfPllarvlaln 151
                  ++ +hG +as      lv +l +rf+  v    lPGhG    t +      +m + + + l a    ++l +   ++G s+G+a+   la + ++rPr  v     l++   +a   +P+l+r+l+  
  MMETSP1174-20130828|11560_1 101 VVYIHGFSASRQENDSLVQALRTRFKanVFCARLPGHGGKSETGHELRDDASMEKYFEAALDAaylgLELgEKIILVGSSTGGALCTWLAAQPSIRPR--VDSLILLSPAYCLASSAYPVLSRLLYYT 226
                  5679*********************75578899****9755544433344566655544443311114441345689*********************..555678999999**********999754 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.24
    TIGR03056 215 alpriavPvlliageedkavppdvs 239
                  +++ ++ P l++    d+av+ + +
  MMETSP1174-20130828|11560_1 287 DIQEVTCPALIVGCPTDHAVSWKYT 311
                  6677788888888888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 884.56
//
Query:       MMETSP1174-20130828|11567_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 687.12
//
Query:       MMETSP1174-20130828|11570_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 321.17
//
Query:       MMETSP1174-20130828|11572_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|11568_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    7.6  48.5       0.24    6.9  31.0    1.9  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.1    4.6  48.9        1.6    4.1  33.9    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  31.0   0.00012      0.24     186     470 ..      28     327 ..      27     346 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00012
    TIGR02168 186 enLeRledilkElerq..lksLerQaek.....Aekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleq......lekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkl..eeaeaelkelqeeleeleeeleeleeelerleealeelee 470
                  en+e l+ +l+El+ +  +++L +  +k      +++ +  + +++ + + ++l l e+++ +  l  e++ ++ e++++  el+  e+    ++  k+e  + l+e+++e  ++++e+ r++qe+ +++++le+       ++e   +e+  + l s+++++    a+leeel+  +   + l ++ +++++el+ l+ +++++ e+++e ++++ +++++++++++ +  l++++e+l ++r++l +e+++ ekk+   ++ +++++l+ el +  + +e+ + +l++++++l++ + 
  MMETSP1174-20130828|11568_1  28 ENMEILNKLLNELRSEkeMRELITRENKetldeVNRLDRTLNTEKARHEEEAALVLGEKQQDITVLHHEISIVKLEIDKYLVELDGFEQLAVHHEVLKKEYTNVLNEIEEESSRHAEEVIRINQEKTEHRRQLERnfrrtlIQTECTVMEKAFDALPSQSKKQLLGNAKLEEELSLQELGEKHLTKQTSTRHQELKRLNGEVKNMHEKFNERSKKIVQIKRNMTNTESYIVGLDRSIEELGQQRSELLRETSASEKKMpaAQLLNRREALNDELYQASQVEEKWKRRLRDAQARLKNSDT 327
                  566666666666654300333322211101111233333333333333334444444445555555555555555555555555555555555555555555555666666666666666666666655555443222221344555566666666677777777777777777666666666777777777777777777777777777777777777777777777777777777777777777766666666554113445666666666666666666666666666666666544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  33.9   0.00076       1.6     695    1016 ..      21     347 ..       4     351 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00076
    TIGR02169  695 qselrriek..rldelssklsdaekkieeiekeleqleeeeeklkerle.eleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseeki..eeieeelekleeevsriearleeieael..nklelekelleeeiqelqeeieeleeqkkeiekeieelkakleele..eel..eeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeErkellerieelekk 1016
                    +e ++ e+   l++l ++l+ ++++ e i +e ++  +e ++l + l+ e++++ +e    l ek++ ++ l++ei+  + ++ k+  +l+  e+   ++++  +e ++ l+++eee sr  + +  i++e   ++++le+++ +  iq++   +e++ +   ++ k++   +aklee    +el  ++l ++  + ++elk L+ e+++++++ +e  kk+ +++ ++ + ++ +  l   +e+l ++ sel +    e + +e+++ + ++ +++e+++ el +  +v  k      ++++rl++      +L++ ++++ ++i + e +
  MMETSP1174-20130828|11568_1   21 ENEWSEKENmeILNKLLNELRSEKEMRELITRENKETLDEVNRLDRTLNtEKARHEEEAALVLGEKQQDITVLHHEISIVKLEIDKYLVELDGFEQLAVHHEVlkKEYTNVLNEIEEESSRHAEEVIRINQEKteHRRQLERNFRRTLIQTECTVMEKAFDALPSQSKKQLLGNAKLEEELslQELgeKHLTKQTSTRHQELKRLNGEVKNMHEKFNERSKKIVQIKRNMTNTESYIVGLDRSIEELGQQRSELLR----ETSASEKKMPAAQLLNRREALNDELYQASQVEEKWKRRLRDAQARLKNS--DTRTLATGESSVVDLISKWEAE 347 
                   3333333321135666666676777777776666666666666655554144445555666677888889999999999999999999999999998888887445667889999999999999998887764114555889999999999888888888877777777777777666532012331144456666777788888888888888888888888888888888888888888888888888888886....5677788899999999999999999999999888888888888888764..4557888778888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.50
# Mc/sec: 1214.30
//
Query:       MMETSP1174-20130828|11574_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 622.99
//
Query:       MMETSP1174-20130828|11573_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.57
# Mc/sec: 887.51
//
Query:       MMETSP1174-20130828|11575_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 1594.43
//
Query:       MMETSP1174-20130828|11578_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-11   40.6  12.8    2.5e-07   28.0   4.4    2.2  2  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   1.1e-07   0.00045      42     120 ..      64     140 ..      38     154 .. 0.69
   2 !   28.0   4.4     6e-11   2.5e-07     172     294 ..     154     270 ..     135     296 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-07
    TIGR00820  42 kvkalrletklflvvkaFaaGvilatgfvHvlpeafealsspcleetewkkfpfagfialisailtllvDllatsyyer 120
                  ++++   +++++ v+  F+ Gv la +f H++p+a  a+s+  + ++e    pfa ++a   +i+ +    + +s++ +
  MMETSP1174-20130828|11578_1  64 NMRSFTENSDALAVANSFSGGVFLALSFGHLIPHAAHAFSEVSVGHHE--ALPFAAVLAGYMLIFFIENIAFDSSSMLH 140
                  5566677888999*******************************9955..56777776544443333333333333333 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 6e-11
    TIGR00820 172 aqvLelGiivHsvviGlslGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlsk 294
                  a vL + +  Hs++  ++lG+ +s  ++  +   +  Hq  e ++l   +++a +++ ++++l  +f++  P+gia+G+a ++          i e ++ a+ aG  +Y++  +++  +F   
  MMETSP1174-20130828|11578_1 154 AIVLLVALGAHSLIETMALGVQSSSRSAWLIAGSIGLHQPAESMALLVALLKAGLTRRRITVLLGLFSLLGPIGIALGVAAKAL------VGGIFEPIMVAITAGTFVYVGATEVIPEEFSDG 270
                  6677777789***********99999998888899*******************************************997654......3458899999****************9999643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1080.88
//
Query:       MMETSP1174-20130828|11580_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|11582_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 951.92
//
Query:       MMETSP1174-20130828|11579_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041    9.9   5.5      0.058    9.4   3.8    1.1  1  TIGR00344 alaS: alanine--tRNA ligase
        1.1    6.2   8.8        3.5    4.5   6.1    1.9  1  TIGR00219 mreC: rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8   2.9e-05     0.058     694     774 ..     156     236 ..     141     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2.9e-05
    TIGR00344 694 eeaiellkeeekkLkeladkLkkeleelakkveklkeelkalrkeleslkkkiakqkaeelkekaetieelkvlvekvdak 774
                  e+ai++   +  ++   +++L +++++l+++ + l+e+l  l+++ e ++k++a+ +  +l++++e++e+lk +  ++ ++
  MMETSP1174-20130828|11579_1 156 ESAIAFGMRKALIIDHRKTQLVAKVKHLQSEKADLEEQLSSLQNKFEDIQKNEAERQERDLQKHMEEVEKLKQVNLSLRTN 236
                  4555577778888899999****************************************************9987777664 PP

>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.1    0.0017       3.5      53     113 ..     189     243 ..     158     246 .] 0.73

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0017
    TIGR00219  53 aprelldgisenlkdlnkleleNkklrqellkknaqlelltqelkqENkrLrelLnsvlss 113
                    +e l+ + + ++d++    +N++ rqe + + + +e +++ lkq N +Lr +L+s+l++
  MMETSP1174-20130828|11579_1 189 DLEEQLSSLQNKFEDIQ----KNEAERQERDLQ-KHMEEVEK-LKQVNLSLRTNLESMLRT 243
                  33455666666666666....89999*999999.88999999.**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       509  (0.124086); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 954.98
//
Query:       MMETSP1174-20130828|11584_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|11586_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.8   0.0      0.015   12.7   0.0    1.0  1  TIGR00035 asp_race: aspartate racemase


Domain annotation for each model (and alignments):
>> TIGR00035  asp_race: aspartate racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.7e-06     0.015      54     111 ..      20      77 ..       9      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.7e-06
    TIGR00035  54 ldreedrprpiLidsakkleelgadfiiltcntaHkfaediqkaikiPl.ismieetAe 111
                   ++ +++ ++ L    ++  +  ++f++l++n a++f+ +i + +++P+ + +i++t  
  MMETSP1174-20130828|11586_1  20 TGEPWEKYMKALTRCSEHSASGTPEFVVLSTNLAYTFL-AILALVGVPIeLVVIRKTTT 77 
                  567899****************************9998.68889999986566666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|11585_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 260.31
//
Query:       MMETSP1174-20130828|11589_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|11590_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|11593_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 365.80
//
Query:       MMETSP1174-20130828|11592_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1165.90
//
Query:       MMETSP1174-20130828|11596_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   14.6   0.3      0.016   12.8   0.1    1.9  2  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family


Domain annotation for each model (and alignments):
>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.042   1.7e+02      49      87 ..      39      75 ..      35      80 .. 0.64
   2 !   12.8   0.1   3.9e-06     0.016      76     114 ..      80     118 ..      47     130 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.042
    TIGR03830 49 ensaaiaefkrkvdglltgeeirriRkklglsqkeaael 87
                 +n+++ +++++++++l    ++ +  ++lg++q +a++l
  MMETSP1174-20130828|11596_1 39 QNHRRQSKIQKSAQKLFDR-AL-QTYNRLGVTQGQASTL 75
                 5666666666666555444.33.4457888999888876 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.9e-06
    TIGR03830  76 klglsqkeaaellgggknafsrYErgevrpskalskLlr 114
                  +l+++q  + + l++  +a+++YE+ ++++s++   L+ 
  MMETSP1174-20130828|11596_1  80 HLHVRQDRFTDALNFYAQALKKYEEMDAEQSRHSCGLVG 118
                  799****************************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 759.83
//
Query:       MMETSP1174-20130828|11599_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 410.11
//
Query:       MMETSP1174-20130828|11597_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.2   0.2       0.16    9.6   0.1    2.2  1  TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT


Domain annotation for each model (and alignments):
>> TIGR03406  FeS_long_SufT: probable FeS assembly SUF system protein SufT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   3.9e-05      0.16      25     104 ..     162     258 ..     151     266 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.9e-05
    TIGR03406  25 evtitqalGgnftvvveGnllriegkdadal...........Gke.....kvekeel.eekaeeeekeeavweqlrtvydPeiPvnivdLGLvyevk 104
                  ++t tq+  g+ft +++Gn+  ++ +dad             Gk+     + + e++ e++ ++e++ +a+ e +r  + P i vn ++   vy+ k
  MMETSP1174-20130828|11597_1 162 VMTYTQDEHGEFTETMNGNFTELAKEDADNWdgkstirlynpGKPkpgakPLSIEQVrEKQCQQESNLKAIIELVRPYFYPLIIVNHMQYNKVYNTK 258
                  567899**********************975311111223333331111111122221233455556667778888888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.66
# Mc/sec: 871.93
//
Query:       MMETSP1174-20130828|11603_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 477.49
//
Query:       MMETSP1174-20130828|11605_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.9   0.0      0.042   12.0   0.0    1.4  1  TIGR02675 tape_meas_nterm: tape measure domain


Domain annotation for each model (and alignments):
>> TIGR02675  tape_meas_nterm: tape measure domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     1e-05     0.042       9      61 ..      15      67 ..      10      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
    TIGR02675  9 GasaeeadgaliqlsQmlasGklraeeinslleavPgalqalAkamGvtagel 61
                  +s + a++   q  Q++ s k  ++ + +ll ++ +a+q l++ +G+ +gel
  MMETSP1174-20130828|11605_1 15 AKSHDYAQRQCAQTFQSYLSSKFESQKLWKLLSKASQAIQHLDELAGIPRGEL 67
                 5789999999************************999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 400.77
//
Query:       MMETSP1174-20130828|11601_1  [L=1047]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 1794.71
//
Query:       MMETSP1174-20130828|11606_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 787.53
//
Query:       MMETSP1174-20130828|11607_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    3.6   8.9         10    3.0   6.0    1.4  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.5    0.0087        36     182     192 ..      35      45 ..       3      51 .. 0.58
   2 ?    3.0   6.0    0.0025        10      29      69 ..      37      80 ..      26      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.0087
    TIGR00599 182 vqCPiCsqlvk 192
                   +CP+C + + 
  MMETSP1174-20130828|11607_1  35 KECPVCMETMS 45 
                  36999988875 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0025
    TIGR00599 29 ChvCkdffkaPvl.t.sCsHtFCslCiRrcLs.eepkCPlCrae 69
                 C vC + + a  l t +C H F + C++++ s  +  CPlCr e
  MMETSP1174-20130828|11607_1 37 CPVCMETMSALSLcTlPCIHRFHAECLKKWRSfGQQTCPLCRHE 80
                 99999998875441459************99835889****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|11608_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.87
# Mc/sec: 256.39
//
Query:       MMETSP1174-20130828|11611_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 363.86
//
Query:       MMETSP1174-20130828|11612_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.64
# Mc/sec: 72.18
//
Query:       MMETSP1174-20130828|11615_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 227.68
//
Query:       MMETSP1174-20130828|11613_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 717.69
//
Query:       MMETSP1174-20130828|11614_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    5.8  57.6        1.9    5.4  39.9    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  39.9   0.00048       1.9      85     224 ..      19     151 ..       7     153 .] 0.39

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00048
    TIGR02794  85 eakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaee.akakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAka 224
                  e +++ aae++++    + r ++e      ++a+k +e+++ qae+ a++k+a++a    e+ a   +ka e+A+ +  + a+  aa++a+ +aE+  a+ ka+++a+ +a++ a  Ka +  a+a+ae+ A +KA++eA+a
  MMETSP1174-20130828|11614_1  19 EVEERIAAEREEESSFVEVRTQEEI-----DAAKKVAEDARVQAEKiAAEKAAEDAVLYLEKVA--MEKAVEDARIETDKIAAENAAEDARVEAEK-VAADKAAKDAReEAEKVASDKATEH-ARAEAEKIAAEKAAEEARA 151
                  4444444544444444333322222.....2222222222222222122233333344444444..444445544444444444444444444443.2334444444444555555555222.4444443355555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       579  (0.141151); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.83
# Mc/sec: 243.31
//
Query:       MMETSP1174-20130828|11617_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-25   88.2   2.4    5.3e-23   79.6   0.7    2.8  2  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.7   1.3e-26   5.3e-23      77     167 ..      20     125 ..      10     138 .. 0.82
   2 !    6.4   0.0   0.00025         1     189     217 ..     175     203 ..     160     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 1.3e-26
    TIGR00569  77 evvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveefnvsieqFvkn...lket.............rekaleevLeyEllliqsLkfsLlvhnPyrPleGFl 167
                  ++ +tA+++FkRFyL  svme+dPk++v tcvFlA+K+e   +s ++ +++   lk++                ++e +++ El+l++ L+f+L+ ++P+ PleGF+
  MMETSP1174-20130828|11617_1  20 NIEATALTFFKRFYLSHSVMEFDPKVMVPTCVFLASKCEGT-MSPDSTINEyfpLKSSnsagvgeygiadaTGLKPEDIVSMELKLLNGLDFQLYCFHPFTPLEGFV 125
                  589***********************************974.4544444432223333456777777766666789******************************7 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00025
    TIGR00569 189 kflnevlltDvvllytPsqiaLaailsea 217
                  + l   +l+D  ll+ P  +aLaa+l + 
  MMETSP1174-20130828|11617_1 175 ETLRLSFLSDLPLLFPPGALALAALLASV 203
                  66777899*****************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1070.58
//
Query:       MMETSP1174-20130828|11619_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|11620_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|11621_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 912.28
//
Query:       MMETSP1174-20130828|11623_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 399.53
//
Query:       MMETSP1174-20130828|11622_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-15   52.8   0.0      5e-15   52.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.3e-05   21.8   0.9    3.1e-05   21.4   0.0    1.6  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   2.4e-18     5e-15       4     202 ..      59     254 ..      56     261 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 2.4e-18
    TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLs......hPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG..a.LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                  ++vaik++R +++ e+  +    +e+++ + L+        +iv+L++s +     l  v e v  + lr+v+a  G    L+ +       q+L al + h+ G+vh DLkP+n+++s++   +  kv D G      +  +        +t +l s  Y aPe + g +      D+++ G  ++e  tGk   +G++ +++l  ++
  MMETSP1174-20130828|11622_1  59 REVAIKIIRANNMMEHTGM----KELSVLQDLNqedpedRRHIVRLFESFRFRG-HLCIVLEVVGNLNLRKVIAKYGdgRgLAFKAVRSYTKQILTALRHMHKLGMVHADLKPDNMVISQE--LKLLKVCDMGSVHRKHELSE------LDETRYLVSRYYRAPEIVLGLTKkDCPLDIWSAGCAFIEMYTGKILFTGETNNDILKSHI 254
                  6899999999966444333....3555555553111111569*******99876.999****************855224366666666788**************************986..56789999996544444444......5567799*********998865415678***************************98775 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08   3.1e-05      73     129 ..     111     177 ..     104     198 .. 0.82
   2 ?   -4.0   0.1      0.88   1.8e+03      32      53 ..     283     304 ..     281     307 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-08
    TIGR03724  73 kivmeyiegkklkdlleekel..........ellkevGelvgklHkagivhgDlttsNiivkddkly 129
                   iv+e + + +l++++ +  +          +++k++ +++ ++Hk g+vh Dl + N++++++  +
  MMETSP1174-20130828|11622_1 111 CIVLEVVGNLNLRKVIAKYGDgrglafkavrSYTKQILTALRHMHKLGMVHADLKPDNMVISQELKL 177
                  699999999999999999888999999999899999999**********************665433 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.88
    TIGR03724  32 hpelDeklrkeRtrkEarllse 53 
                  h+el +k+ ++Rt++ +  l +
  MMETSP1174-20130828|11622_1 283 HNELTDKVTRKRTQRSMPNLTQ 304
                  7788899999999887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1355.30
//
Query:       MMETSP1174-20130828|11625_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|11628_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 870.41
//
Query:       MMETSP1174-20130828|11633_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1174-20130828|11632_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 820.47
//
Query:       MMETSP1174-20130828|11634_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    6.1  11.7       0.46    5.8   8.1    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.1   0.00011      0.46     931     999 ..      12      81 ..       2      91 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00011
    TIGR00927 931 deeeiaddeevkd.etgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeee 999
                  ++ + ++ +++++   g++  +  n+++  +  + v+g+gg+ G d  +eeeee+ +  +  e  eeeee
  MMETSP1174-20130828|11634_1  12 EKTSTQSVTSSRNrSGGSNRKSKRNNKKLTKVPDVVEGGGGGAGNDDGKEEEEEKHDVTNAIEAAEEEEE 81 
                  2222333333333033344444444555555667788888888888777777766644444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 510.36
//
Query:       MMETSP1174-20130828|11629_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 951.71
//
Query:       MMETSP1174-20130828|11631_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 737.72
//
Query:       MMETSP1174-20130828|11637_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 933.35
//
Query:       MMETSP1174-20130828|11640_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|11642_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 248.75
//
Query:       MMETSP1174-20130828|11639_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-11   40.5   0.2    7.7e-11   39.8   0.1    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    1.1e-10   38.9   0.2    1.9e-10   38.1   0.1    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    2.1e-10   38.3   0.1    3.5e-10   37.6   0.1    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.1e-09   34.8   0.1    4.1e-09   33.9   0.1    1.4  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    3.3e-09   34.2   0.0    6.3e-09   33.3   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.3e-09   33.9   0.0    7.2e-09   33.2   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
      6e-09   33.5   0.3    1.1e-08   32.6   0.2    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    5.8e-07   27.7   0.1    1.1e-06   26.7   0.1    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    6.5e-06   23.7   0.1    1.5e-05   22.5   0.1    1.5  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    9.5e-06   22.5   0.1    1.4e-05   21.9   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    2.7e-05   21.8   0.4    0.00022   18.8   0.1    2.1  2  TIGR00537 hemK_rel_arch: putative methylase
    4.7e-05   21.7   0.0    8.3e-05   20.9   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
    0.00023   17.6   0.1    0.00033   17.1   0.1    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
    0.00041   18.0   0.0    0.00075   17.2   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0023   14.9   0.0     0.0036   14.3   0.0    1.2  1  TIGR00452 TIGR00452: putative methyltransferase
      0.004   14.1   0.1     0.0067   13.3   0.1    1.3  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
     0.0049   14.1   0.1     0.0081   13.3   0.1    1.2  1  TIGR00478 tly: hemolysin TlyA family protein
  ------ inclusion threshold ------
      0.017   12.6   0.1      0.028   11.9   0.1    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
      0.024   12.3   0.1      0.042   11.5   0.1    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
      0.046   10.7   0.7       0.28    8.1   0.3    2.0  2  TIGR03621 F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   3.8e-13   7.7e-11     159     216 ..     260     317 ..     253     330 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3.8e-13
    TIGR00406 159 kdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                   +k+v+DvG+GSG+L++ a+k gaa+v++vD+ +  ++ a+kN+++N++ +++++++ 
  MMETSP1174-20130828|11639_1 260 AGKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNGLAERVELVKG 317
                  579*************************************************998765 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   9.2e-13   1.9e-10     116     174 ..     262     319 ..     249     330 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 9.2e-13
    TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnl 174
                  k +lD+gtGsG  a+  A + + a vi+vD s   l +a++N++k++l ervel+++++
  MMETSP1174-20130828|11639_1 262 KTVLDVGTGSGVLAMFAAKAGA-ARVIGVDNSAAILDIAKKNVSKNGLAERVELVKGKI 319
                  679***********98888777.********************************9987 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   1.7e-12   3.5e-10      90     150 ..     262     322 ..     249     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.7e-12
    TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllea 150
                   +vlD+gtGsG++a+  ak    a+vi+vD s++ l++a+kN++++gl+e ve++k+ + e 
  MMETSP1174-20130828|11639_1 262 KTVLDVGTGSGVLAMFAAKA-GAARVIGVDNSAAILDIAKKNVSKNGLAErVELVKGKIEEL 322
                  58************987776.99**************************99*****998654 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1     2e-11   4.1e-09      44     110 ..     255     323 ..     231     330 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2e-11
    TIGR01983  44 nekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk.kieyelksveela 110
                  n++  +g++vlDvG+G+G+l+   a+ ga+ v+g+D s+ ++++Ak+  +k++l+ ++e    ++eel 
  MMETSP1174-20130828|11639_1 255 NTTLYAGKTVLDVGTGSGVLAMFAAKAGAArVIGVDNSAAILDIAKKNVSKNGLAeRVELVKGKIEELL 323
                  4455679*********************999***********************999999999999985 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.1e-11   6.3e-09      31     103 ..     252     325 ..     247     329 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 3.1e-11
    TIGR01934  31 avkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLpfe 103
                  ++++ +  ++++vlDv tG+G la+  ak+ +a+v+gvD s+++L++akk ++++   ++ve ++++ eeL ++
  MMETSP1174-20130828|11639_1 252 IMRNTTLYAGKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNgLAERVELVKGKIEELLVS 325
                  55666667999******************999********************9999999*********999765 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.5e-11   7.2e-09     122     181 ..     261     319 ..     245     327 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.5e-11
    TIGR03533 122 vkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdl 181
                   k+vld+ tGsG la+ aa+a   a+v  vD s+  L++a++n+++ +l++rvel+++ +
  MMETSP1174-20130828|11639_1 261 GKTVLDVGTGSGVLAMFAAKA-GAARVIGVDNSAAILDIAKKNVSKNGLAERVELVKGKI 319
                  578************998876.789*******************************9876 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.2   5.5e-11   1.1e-08      50     114 ..     255     321 ..     233     325 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 5.5e-11
    TIGR02021  50 kd.slkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaenveFevndles 114
                  ++ + +Gk+vlD G G+G+l++  Ak Ga +v +vD s++++++a+k+ +k+  ae+ve + + +e+
  MMETSP1174-20130828|11639_1 255 NTtLYAGKTVLDVGTGSGVLAMFAAKAGAaRVIGVDNSAAILDIAKKNVSKNGLAERVELVKGKIEE 321
                  222789**********************648****************************99998876 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   5.5e-09   1.1e-06      11      79 ..     252     320 ..     239     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 5.5e-09
    TIGR02469  11 tLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieivegdap 79 
                  ++++  l +g+++lD+G G+G +++ aa++ +  rv++++ +++ l+  ++N+ ++  ++++e+v+g+++
  MMETSP1174-20130828|11639_1 252 IMRNTTLYAGKTVLDVGTGSGVLAMFAAKA-GAARVIGVDNSAAILDIAKKNVSKNgLAERVELVKGKIE 320
                  6777788999***************99886.556**********************7788999*999766 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   7.1e-08   1.5e-05      34     108 ..     249     322 ..     241     327 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 7.1e-08
    TIGR02752  34 rkdtmkrmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdakl.envelvhgnamel 108
                   + +m++  + +gk++ldv  g++  a+  a+      +v+g+d s  +l+++k+ v ++ l e+velv+g+  el
  MMETSP1174-20130828|11639_1 249 ADAIMRNTTLYAGKTVLDVGTGSGVLAMFAAK--AGAARVIGVDNSAAILDIAKKNVSKNGLaERVELVKGKIEEL 322
                  6789***************8887766655444..45689******************98887368******98776 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.9e-08   1.4e-05     290     362 ..     257     331 ..     247     362 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.9e-08
    TIGR00479 290 elqgeekvvDaycGvGtftlplAk.qaksvvgvevvkesvekakrnAelngian.veflageleevlpklskeki 362
                   l    +v+D+ +G G ++++ Ak +a++v+gv+   ++++ ak+n  +ng+a  ve ++g++ee l+  s +  
  MMETSP1174-20130828|11639_1 257 TLYAGKTVLDVGTGSGVLAMFAAKaGAARVIGVDNSAAILDIAKKNVSKNGLAErVELVKGKIEELLVSSSPQSE 331
                  5666789****************84699***********************9744***********998775555 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.43        88      96     134 ..     142     180 ..     130     191 .. 0.85
   2 !   18.8   0.1   1.1e-06   0.00022      18      67 ..     259     309 ..     249     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.43
    TIGR00537  96 eedekrgdyldlaidGGkdGrkvidrfldelpeilkegG 134
                   ede  g+  d a  G  dG+++++  + +l+e l+++ 
  MMETSP1174-20130828|11639_1 142 MEDEWSGSEDDGATLGAGDGKNILEDRVASLEEELRRRT 180
                  577788888899999******************999875 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.1e-06
    TIGR00537  18 lknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnve 67 
                    ++ vl++G+G+G++a+ +++ g+ +++++d + +   ++k+n   n+  
  MMETSP1174-20130828|11639_1 259 YAGKTVLDVGTGSGVLAMFAAKAGAaRVIGVDNSAAILDIAKKNVSKNGLA 309
                  56789*************999999989******999999****99988753 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.1e-07   8.3e-05       1      77 [.     263     336 ..     263     360 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.1e-07
    TIGR01444   1 vviDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdregeleftvsddatgnss 77 
                  +v+D+G   G +++++a+a+a  rvi ++ +  +l ++++nv++n+l   + +++  g+ e++l+ +++++++++ +
  MMETSP1174-20130828|11639_1 263 TVLDVGTGSGVLAMFAAKAGAA-RVIGVDNSAAILDIAKKNVSKNGL--AERVELVKGKIEELLVSSSPQSERRDET 336
                  79*******************7.************************..5666666666666666555554444433 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.6e-06   0.00033     273     344 ..     251     317 ..     234     333 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.6e-06
    TIGR04074 273 avvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqs 344
                  a++ + +    ++vlD+G+G+g  l++ +a++ + +++gvd sa+ L++ak+ ++ + l+e    rvel+++
  MMETSP1174-20130828|11639_1 251 AIMRNTTLYAGKTVLDVGTGSGV-LAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNGLAE----RVELVKG 317
                  555555666789**********6.5789999*********************998665554....4555555 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.6e-06   0.00075      33      93 ..     259     324 ..     251     329 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.6e-06
    TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklpl 93 
                  +  ++vLd+G G+G+l  + +++  +a++i +D+s+  l +akk++s      +v+ ++g ie+l +
  MMETSP1174-20130828|11639_1 259 YAGKTVLDVGTGSGVLA-MFAAKAGAARVIGVDNSAAILDIAKKNVSknglaeRVELVKGKIEELLV 324
                  55689*********665.5666666677******************999999999999999998865 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.8e-05    0.0036     110     156 ..     249     295 ..     234     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.8e-05
    TIGR00452 110 wdrvlkhlsplkgrtildvGcgsGyylfrmvgeGaklvvGidptelv 156
                   d ++++ +   g+t+ldvG gsG   +   ++Ga  v+G+d +  +
  MMETSP1174-20130828|11639_1 249 ADAIMRNTTLYAGKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAI 295
                  5889999999**************99888899**********87655 PP

>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   3.3e-05    0.0067     138     204 ..     249     315 ..     230     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.3e-05
    TIGR02716 138 ielllkeaklddvkklidvgggigdiaaallkafpeldvtllnlpsaldlvrenvaekgladrirgv 204
                   + +++++ l   k+++dvg g g +a    ka     + + n  + ld+ ++nv++ gla+r+  v
  MMETSP1174-20130828|11639_1 249 ADAIMRNTTLYAGKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNGLAERVELV 315
                  5678889999999*************9999999999999999*********************9765 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1     4e-05    0.0081      75     128 ..     260     313 ..     246     325 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4e-05
    TIGR00478  75 knkivlDvGsStGGFtdcalqkGAkkvygvdvgknqleekLrqdeRvkvlertn 128
                   +k vlDvG+  G    +a + GA +v gvd +   l+   ++  +  + er +
  MMETSP1174-20130828|11639_1 260 AGKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNGLAERVE 313
                  6899*****************************999998888777777777765 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014     0.028      53     108 ..     261     316 ..     253     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
    TIGR00095  53 gakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlklskeqatvl 108
                  g  vLd+  Gsg l++ A   ga++v+ v+ ++++  + k+N+s+  l ++ + v+
  MMETSP1174-20130828|11639_1 261 GKTVLDVGTGSGVLAMFAAKAGAARVIGVDNSAAILDIAKKNVSKNGLAERVELVK 316
                  5689***************************************9988777555544 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00021     0.042      74     126 ..     257     307 ..     245     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
    TIGR00080  74 elkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLe 126
                   l ag+ vL++GtGsG +a   a+       v++++    +   a++++ k +
  MMETSP1174-20130828|11639_1 257 TLYAGKTVLDVGTGSGVLAMFAAKAGAA--RVIGVDNSAAILDIAKKNVSKNG 307
                  588999**********999888886554..79999999999999999987754 PP

>> TIGR03621  F420_MSMEG_2516: probable F420-dependent oxidoreductase, MSMEG_2516 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.34        70     184     221 ..     154     191 ..     147     206 .. 0.79
   2 ?    8.1   0.3    0.0014      0.28     156     205 ..     267     318 ..     236     322 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.34
    TIGR03621 184 kvllskatadelaervafvreaagdRfdeielnlliqa 221
                  ++l +  +++ l++rva + e    R  ++el  ++  
  MMETSP1174-20130828|11639_1 154 ATLGAGDGKNILEDRVASLEEELRRRTAQLELATRVAR 191
                  4555666788899*******************998865 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0014
    TIGR03621 156 gGnGdrlLrlaare...AdIvglagasakedkvllskatadelaervafvrea 205
                   G+G+ +L++ a++   A+++g+   +a  d +  +++ ++ laerv++v+  
  MMETSP1174-20130828|11639_1 267 VGTGSGVLAMFAAKagaARVIGVDNSAAILD-IAKKNVSKNGLAERVELVKGK 318
                  5899999998666512267777777777777.9999**************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.54
# Mc/sec: 1437.21
//
Query:       MMETSP1174-20130828|11650_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 886.80
//
Query:       MMETSP1174-20130828|11649_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1178.24
//
Query:       MMETSP1174-20130828|11657_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|11656_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 643.45
//
Query:       MMETSP1174-20130828|11659_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.28s 00:00:00.40 Elapsed: 00:00:00.71
# Mc/sec: 500.07
//
Query:       MMETSP1174-20130828|11663_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   34.9   0.0    2.3e-08   31.1   0.0    2.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    6.7e-07   26.1   0.0    9.3e-07   25.6   0.0    1.1  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    2.5e-06   24.4   0.0      3e-06   24.1   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    3.9e-05   20.6   0.0    5.8e-05   20.0   0.0    1.2  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    0.00029   17.6   0.0    0.00043   17.0   0.0    1.2  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.8e-11   2.3e-08     279     385 ..      80     200 ..      70     202 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.8e-11
    TIGR01988 279 rvaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeaver...gedigsla...........vLkrYererradnaallaatdllnrlfsndfpplrllRnlGLrlleklpplkkllikqa 385
                   ++l GdAAh + P  GQG N  ++D+  La+ + e+ ++   +   g+++           +Lk+Ye++r++ +a+++a    l  l   +   l   R+  + ++ k++++kk++++ a
  MMETSP1174-20130828|11663_1  80 YCVLAGDAAHAMPPFLGQGSNQAIQDAYCLATKIFEHNSNvrtNLPPGEYDedtktqddigiLLKEYENRRWSPTAQITAKAAFLGYLECGEEGFLSKFRDTFFFVMGKVGVAKKVFLDAA 200
                  589****************************999876543111222222211111112222379999999999999999999999999999999999999999999999999999998766 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.1e-09   9.3e-07     302     344 ..      81     124 ..      71     136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.1e-09
    TIGR03219 302 valiGdaahamlphqGaGaGqGledaylla.rlledtkleaedl 344
                   +l Gdaaham p  G G+ q ++day la +++e++     +l
  MMETSP1174-20130828|11663_1  81 CVLAGDAAHAMPPFLGQGSNQAIQDAYCLAtKIFEHNSNVRTNL 124
                  4799************************9835778777666665 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.6e-09     3e-06     276     334 ..      79     137 ..      59     197 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.6e-09
    TIGR01984 276 ervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDr 334
                  + +vl g+aA+ + P  gQG N+ ++D+  La  + ++++++ +     ey +  k+  
  MMETSP1174-20130828|11663_1  79 RYCVLAGDAAHAMPPFLGQGSNQAIQDAYCLATKIFEHNSNVRTNLPPGEYDEDTKTQD 137
                  5699*******************************999977766666666655555444 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.1e-08   5.8e-05     335     367 ..      81     113 ..      71     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.1e-08
    TIGR01989 335 vALvGDAAHrvHPLAGqGvNlGfsDvesLvkal 367
                  + L GDAAH + P  GqG N  ++D+  L++ +
  MMETSP1174-20130828|11663_1  81 CVLAGDAAHAMPPFLGQGSNQAIQDAYCLATKI 113
                  7899***********************999876 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.2e-07   0.00043     282     319 ..      82     119 ..      76     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.2e-07
    TIGR02360 282 flaGdaahivpptGakGlnlaasdvaylyealleayke 319
                   laGdaah +pp   +G n a+ d + l + + e+ ++
  MMETSP1174-20130828|11663_1  82 VLAGDAAHAMPPFLGQGSNQAIQDAYCLATKIFEHNSN 119
                  69***************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.70
# Mc/sec: 384.65
//
Query:       MMETSP1174-20130828|11662_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1477.02
//
Query:       MMETSP1174-20130828|11667_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|11664_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   27.7   7.5    2.1e-07   27.7   5.2    1.6  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    6.3e-07   26.5  17.4    8.9e-07   26.0  12.1    1.2  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.9e-06   23.0   1.0    3.9e-06   23.0   0.7    1.7  2  TIGR00805 oat: sodium-independent organic anion transporter
    0.00068   17.6  13.6    0.00068   17.6   9.4    3.1  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   5.2   2.1e-10   2.1e-07     100     230 ..      57     190 ..      37     296 .. 0.84
   2 ?   -2.1   0.1      0.21   2.2e+02     124     170 ..     316     363 ..     268     381 .. 0.56

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 2.1e-10
    TIGR00894 100 akkygtkkvig...aalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHpkis 230
                    +yg +kv++   + ++++ +l   iP       +l+++  ++ G+++     +   l akW+  +ER+ ++++ +   q+G +++++ + +++ s     +   ++++v++++l++ + ++ ++P + p  s
  MMETSP1174-20130828|11664_1  57 VLRYGLRKVVVggaWLMFIGCILRSGIPGMMSSNRVLLVLGTIFVGAGQPFFQCTPAMLAAKWFGQNERTLATTIAINANQIGIAVSYMAGAYLVHSAVALHTYLCLITAVSCILLVVTVAFFKESPPTPPSYS 190
                  56899999887222445566666666*****99****************************************************************9888888889999*****************9887655 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.21
    TIGR00894 124 PiaaavgvalvivlR.vlqGlaeglvspaqhellakWiPPkERsrlvs 170
                   ++ +   a ++v+  ++ G+  g++ p + e+ +    P +   +v+
  MMETSP1174-20130828|11664_1 316 ATSEKRLHASLFVISiLFLGFFVGPIQPITAEIAVEVTYPADENAIVA 363
                  333333333333333034566666666666666666655555444444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  12.1   8.6e-10   8.9e-07      69     364 ..      50     350 ..      32     380 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 8.6e-10
    TIGR00895  69 allfgplaDrig.RkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnl....iaLvsEyapkrfratvvglvavGyaiGaavggllaalli.pafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgkl...akatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvs..tlssptllllllvilGlfvngaqsgllalma 364
                   ++   +  r+g Rk v+  + l+f  + l s++   + +  vl +l  + +G+  p        L++ + ++  r+++ ++ +   +iG+av+ + +a l+ +a + ++ +++ ++++ +ll++++ +  Es     +   + +++  ++++ ++q     +++   ++++ + +++ l++  ++    +      +++++++ +  ++ + l  Ll ++g++++   ++++l++v  ++gs++lg ++dr +    a+l+ ++  f+ l+++  +  + +l+++ +++lG+fv   q   + ++ 
  MMETSP1174-20130828|11664_1  50 CFIEPLMVLRYGlRKVVVGGAWLMFIGCILRSGIPGMMSSNRVLLVLGTIFVGAGQPFFqctpAMLAAKWFGQNERTLATTIAINANQIGIAVSYMAGAYLVhSAVALHTYLCLITAVSCILLVVTVAFFKESPPTPPSY--SGMLEAAKEVEAQAQ----IQISSGDKAKDGWVEMQTLIKLMRRlllENGFCHALVAFAVSIGITNVVSTFLDHLLEHLGFHQHTIGITGALFQVMIMAGSVVLGSIVDRTKLYYKATLFCFGMSFIWLLATseKRLHASLFVISILFLGFFVGPIQPITAEIAV 350
                  555556666999667777778999************99999999999998888877654112247999*************************999999998567899999999999***************98766665..444444444444444....4444444444444444444433332000233333444555556666678899999************************************9998666666666656555555246677889999999*****9877666555554 PP

>> TIGR00805  oat: sodium-independent organic anion transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.16   1.6e+02      65     122 ..      30      88 ..       9     151 .. 0.64
   2 !   23.0   0.7   3.8e-09   3.9e-06     280     415 ..     182     316 ..     160     330 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.16
    TIGR00805  65 lstsssgliassyeignvlliifvsyFgtklskpkvigiglvilalgsllls.lphfls 122
                  ++  ++ +++s + + nvl++    +   +    kv+  g  ++ +g++l s +p ++s
  MMETSP1174-20130828|11664_1  30 FPGMHPSFLVSIFLSTNVLFCFIEPLMVLRYGLRKVVVGGAWLMFIGCILRSgIPGMMS 88 
                  55556666666666666666666666666666666666666666666665442444443 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 3.8e-09
    TIGR00805 280 lPkalpk.eg.krkrvdleeaekaekredksrkklldkvkdflkiikrlltnklfmlvvlaqvidvlvvkglitFlpKyLEkqygvssakanlligvvnvpaaglgvligGlimkkfklnvkkaaklaillsllsvll 415
                   P + p+ +g  +++ ++e +++ + + + + k+ + +++ ++k + rll ++ f     a ++ + + + ++tFl  +LE ++g+ + ++  ++g+    +++ g+++ G i+ + kl  k a  + +++s++ +l 
  MMETSP1174-20130828|11664_1 182 SPPTPPSySGmLEAAKEVEAQAQIQISSGDKAKDGWVEMQTLIKLMRRLLLENGFCHALVAFAVSIGITNVVSTFLDHLLE-HLGFHQHTIG-ITGALFQVMIMAGSVVLGSIVDRTKLYYK-ATLFCFGMSFIWLLA 316
                  34443321331444556666777777889999999******************999999999******************9.68**998776.566666668899**************886.566888888887554 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   9.4   6.6e-07   0.00068      19     137 ..      54     179 ..      36     182 .. 0.80
   2 ?    3.1   1.4     0.019        20      56     122 ..     236     307 ..     235     319 .. 0.65
   3 ?    3.0   3.0     0.022        22       7      84 ..     278     357 ..     272     379 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.6e-07
    TIGR00880  19 glltdrvGrkpvllvglfifvlsqll.....falssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla..qalgwralflilallallafilllfl 137
                   l++ r+G ++v+++g  +++++ +l      ++ssn ++l++  i++G g  ++  + a l+a+ + ++er+ a  ++  +  +g+ ++ ++Ga+l+  ++  + +l li a+ ++l +++++f+
  MMETSP1174-20130828|11664_1  54 PLMVLRYGLRKVVVGGAWLMFIGCILrsgipGMMSSNRVLLVLGTIFVGAGQPFFQCTPAMLAAKWFGQNERTLATTIAINANQIGIAVSYMAGAYLVhsAVALHTYLCLITAVSCILLVVTVAFF 179
                  34557****************97654111116889***************************************************************8655556666666666666666666665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.019
    TIGR00880  56 iarilqGfgaaaalvagaaliadiikee..ersvalgllsa.gialgpilGpllGavla..qalgwralfli 122
                  ++++l++f+ ++ ++++ +++ d   e+    ++ +g+  a ++++ +  + +lG++++  + + +  lf +
  MMETSP1174-20130828|11664_1 236 FCHALVAFAVSIGITNVVSTFLDHLLEHlgFHQHTIGITGAlFQVMIMAGSVVLGSIVDrtKLYYKATLFCF 307
                  578999*****************9999984455556665441445555556899999996333333333332 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.022
    TIGR00880   7 yAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.....snitvliiarilqGfgaaaalvagaaliadiikeee 84 
                  + ++ +  s ++g   ++v r++++   +++++  +++  l+      + ++++i+ ++ Gf+ +++ +++a ++ +++ +  
  MMETSP1174-20130828|11664_1 278 FQVMIMAGSVVLG---SIVDRTKLYYKATLFCFGMSFIWLLAtsekrLHASLFVISILFLGFFVGPIQPITAEIAVEVTYPAD 357
                  4455566666666...8999999999988888888888777756776678889999999999999999998776666654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.78
# Mc/sec: 847.78
//
Query:       MMETSP1174-20130828|11670_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.57
# Mc/sec: 172.95
//
Query:       MMETSP1174-20130828|11671_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1325.07
//
Query:       MMETSP1174-20130828|11677_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 433.09
//
Query:       MMETSP1174-20130828|11676_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.1      0.027   11.5   0.1    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.6e-06     0.027      26      87 ..      42     103 ..      30     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.6e-06
    TIGR00599  26 slRChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCraedqEskLRknfvveEives 87 
                  ++ C +  + ++ Pv ts +Ht+    i r+L +++  P       +  +  n  ++ ++  
  MMETSP1174-20130828|11676_1  42 AYVCCITSELMRDPVFTSDGHTYERSAIERWLIDHGTSPQTNLRLSNKEVVPNHSLRTLIAE 103
                  56799********************************9987666555555566666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 600.34
//
Query:       MMETSP1174-20130828|11679_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 809.53
//
Query:       MMETSP1174-20130828|11675_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.7    2.3  13.5          8    1.8   9.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   9.4    0.0019         8     437     490 ..     175     228 ..     161     233 .. 0.27

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0019
    TIGR02168 437 lkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlq 490
                  ++++q+e e++++++ +++ + +++++++++ ++++++ eq++q+ +++++q+q
  MMETSP1174-20130828|11675_1 175 RQKIQHEPEQHRHQQPSQQPQPQHVQQHQHQHQQQVQQHEQQVQQRQQQIQQHQ 228
                  112222222222222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       374  (0.091175); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:01.06
# Mc/sec: 551.61
//
Query:       MMETSP1174-20130828|11683_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 546.37
//
Query:       MMETSP1174-20130828|11684_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 463.37
//
Query:       MMETSP1174-20130828|11685_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|11686_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 609.88
//
Query:       MMETSP1174-20130828|11687_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 430.03
//
Query:       MMETSP1174-20130828|11682_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1105.41
//
Query:       MMETSP1174-20130828|11689_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 595.56
//
Query:       MMETSP1174-20130828|11691_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 787.22
//
Query:       MMETSP1174-20130828|11695_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 625.21
//
Query:       MMETSP1174-20130828|11696_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1174-20130828|11701_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|11703_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|11704_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-12   43.3  28.3    9.1e-10   35.9   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      1e-06   25.3  23.7     0.0019   14.6   0.0    2.0  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00029   17.6   2.0    0.00032   17.4   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5  21.6     0.009        12      27      79 ..       3      56 ..       1      90 [. 0.43
   2 !   35.9   0.0   6.6e-13   9.1e-10     404     485 ..     147     234 ..     110     247 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.009
    TIGR01622 27 rersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrresererere 79
                 r+rsRdr++ Rersr +k+r rd + r r r+  ++  r+s++ + se e++ e
  MMETSP1174-20130828|11704_1  3 RDRSRDRDKHRERSRkKKKRARDSRSRSRSRSSESGSDRDSQRPNASEEEKRAE 56
                 444444444444444333344433333333333333333333322222222222 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 6.6e-13
    TIGR01622 404 aseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdkkns......aGkvYlkfdsveaalaavkalngRyFagklitA 485
                      lvL+N+Fd+ +   e + +e++d++  Ec k g v     dk n+       G v + +d +eaa++  +a++gR+F +  + A
  MMETSP1174-20130828|11704_1 147 EVVQLVLRNIFDSSIPRPEIYYTELEDEIGRECLKFGRVLDARCDKTNAgggaagRGCVHIYIDGMEAAARCGEAMHGRWFDEWQMLA 234
                  23569******************************************9833332235799*********************8755555 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9  18.7   0.00059      0.81      24      82 ..       2      57 ..       1      85 [. 0.39
   2 !   14.6   0.0   1.4e-06    0.0019     406     499 ..     142     236 ..      98     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00059
    TIGR01642 24 sRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.rrrSRdrirrrs 82
                 +R+Rsrdr+++R+R r++++r+r  dsR+R r+r  + s  s+++++   +S +++r +s
  MMETSP1174-20130828|11704_1  2 HRDRSRDRDKHRERSRKKKKRAR--DSRSRSRSRSSE-S-GSDRDSQrPNASEEEKRAES 57
                 34444444444444444334333..444444333222.2.12222220222222222222 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.4e-06
    TIGR01642 406 GekptkvvqLt.nlvlaedlldde.eYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaaf 499
                   +kp +vvqL    ++   +   e  Y e+ +++  e+ k+G + + +  + n     + G G v +    ++ a +  e ++Gr F++ ++ a  
  MMETSP1174-20130828|11704_1 142 ADKPVEVVQLVlRNIFDSSIPRPEiYYTELEDEIGRECLKFGRVLDARCDKTNAG-GGAAGRGCVHIYIDGMEAAARCGEAMHGRWFDEWQMLAEI 236
                  679999**996367888888665526799999********************754.456677777777778999999***********99887765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.4      0.14   1.9e+02     335     402 ..      61     138 ..      43     152 .. 0.69
   2 !   17.4   0.0   2.3e-07   0.00032     512     596 ..     150     237 ..     142     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.14
    TIGR01645 335 vtdieakavvssakkeaeevpalpqaapavlkdeviteekP..............vaPsllaiPslvaplglvaPteinpsl 402
                  + + + +a v  a++ ++  p  +   p+++++++i +  P               aP l ++P++ + ++ vaP   +p+ 
  MMETSP1174-20130828|11704_1  61 PGSNGVQARVDEATESSNGQPVQSTGDPEIVSNGIIDAIAPahgtnlgtepldkdTAP-LNGVPASGEMPKGVAP---EPTA 138
                  5555667778888888889999999999999999999999977766666666664444.6677777776666776...3443 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 2.3e-07
    TIGR01645 512 vivlrnmvt.....Pkdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasae.vdrakealdGrffgGrkvvaevd 596
                   +vlrn+ +     P+    +le+ei  ec kfg v      + + g        v i+++   ++e + r+ ea+ Gr+f   ++ ae+ 
  MMETSP1174-20130828|11704_1 150 QLVLRNIFDssiprPEIYYTELEDEIGRECLKFGRVLDARCDKTNAGGGAAGRGCVHIYID---GMEaAARCGEAMHGRWFDEWQMLAEIV 237
                  578888875444336667789*************99888888888888888999******9...55525799***********99999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1018.20
//
Query:       MMETSP1174-20130828|11705_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1174-20130828|11708_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-111  371.1   8.9      5e-84  280.8   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
    3.5e-79  264.6  14.1    1.2e-62  209.9   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      4e-26   89.6   0.0    5.6e-26   89.1   0.0    1.1  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.5e-26   89.0   0.0    9.9e-26   88.5   0.0    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.6e-25   87.8   0.0    2.4e-25   87.3   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.4e-25   86.5   0.0      6e-25   86.0   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.2e-25   85.6   0.0    1.2e-24   84.9   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-24   85.1   0.0    1.6e-24   84.6   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.7e-24   83.1   0.0    7.2e-24   82.1   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.5e-23   80.1   0.0    1.1e-22   78.4   0.0    1.7  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.8e-23   79.7   0.0    7.6e-23   79.0   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.4e-23   78.9   0.0    1.1e-22   78.3   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    8.3e-23   79.0   0.0    1.2e-22   78.4   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    9.1e-23   78.7   0.0    1.7e-22   77.8   0.0    1.4  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.1e-21   74.8   0.0    1.7e-21   74.3   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.1e-21   72.6   0.0    1.3e-20   71.9   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
      1e-20   71.9   0.0    1.8e-20   71.1   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.3e-20   70.4   0.0    4.8e-20   69.9   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.6e-20   70.2   0.0    5.7e-20   69.6   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.9e-20   69.6   0.0    8.7e-20   69.1   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    9.5e-20   68.7   0.0    5.1e-19   66.3   0.0    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.4e-19   68.2   0.0    1.9e-19   67.8   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.9e-18   64.8   0.0    2.8e-18   64.3   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.2e-18   63.1   0.0    1.1e-17   62.2   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    9.5e-18   62.3   0.0    2.1e-17   61.2   0.0    1.5  1  TIGR01978 sufC: FeS assembly ATPase SufC
      3e-17   60.8   0.0    4.5e-17   60.2   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.7e-17   60.6   0.0    6.3e-17   59.8   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.1e-16   58.6   0.0    1.7e-16   58.0   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.9e-16   57.2   0.0    4.3e-16   56.6   0.0    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
    4.9e-16   56.6   0.0      1e-15   55.6   0.0    1.5  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.2e-16   56.1   0.0    1.2e-15   55.5   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    8.2e-16   55.2   1.0      1e-15   54.9   0.0    1.5  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.5e-15   54.2   0.0    6.8e-15   53.2   0.0    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.8e-15   53.4   0.0    5.8e-15   52.8   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      9e-15   52.0   0.1      9e-15   52.0   0.1    1.8  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    9.1e-15   52.0   0.0    2.4e-14   50.6   0.0    1.6  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-14   51.7   0.0    1.5e-12   44.6   0.0    2.3  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-14   51.8   0.0    3.5e-14   50.6   0.0    1.5  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.5e-14   49.8   0.0    7.3e-14   48.8   0.0    1.4  1  TIGR00958 3a01208: antigen peptide transporter 2
    7.7e-14   48.6   0.0    1.3e-13   47.8   0.0    1.3  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.2e-13   47.5   0.0      4e-13   46.7   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.5e-13   47.0   0.0    5.2e-13   46.0   0.0    1.4  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.1e-13   46.2   0.0    8.8e-13   45.4   0.0    1.3  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.7e-13   46.5   0.0    7.7e-13   46.1   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.1e-12   44.4   0.0    4.5e-12   43.9   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.3e-12   41.0   1.0    1.4e-11   40.4   0.0    1.6  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.7e-11   41.9   0.0    6.3e-11   40.1   0.0    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.8e-11   41.1   0.1      7e-08   29.3   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.1e-11   41.8   0.0    3.3e-11   41.1   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      3e-11   38.7   0.0      5e-11   38.0   0.0    1.3  1  TIGR01257 rim_protein: rim ABC transporter
    5.3e-11   39.4   0.0    7.8e-11   38.9   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      1e-09   35.3   0.0    1.8e-09   34.5   0.0    1.3  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-07   27.5   0.0    1.9e-07   26.7   0.0    1.3  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.4e-07   28.6   0.0      3e-07   27.5   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.1e-07   27.1   0.0    4.7e-07   26.4   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    0.00026   17.1   0.4    0.00041   16.5   0.0    1.4  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00032   18.3  12.4    0.00032   18.3   8.6    1.9  2  TIGR01247 drrB: daunorubicin resistance ABC transporter membrane protein
    0.00079   16.9   9.5     0.0013   16.1   6.6    1.3  1  TIGR00025 Mtu_efflux: ABC transporter efflux protein, DrrB family
      0.002   16.0   0.2     0.0031   15.4   0.2    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.013   12.4   0.1       0.02   11.8   0.0    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
      0.014   12.7   7.7      0.027   11.8   5.3    1.4  1  TIGR01291 nodJ: ABC-2 type transporter, NodJ family
      0.023   11.9   0.0      0.043   11.1   0.0    1.3  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
      0.024   11.0   0.0      0.034   10.5   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24
      0.025   12.6   0.1      0.061   11.4   0.1    1.6  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
      0.026   11.8   0.0      0.049   11.0   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.056   10.4   0.0      0.076   10.0   0.0    1.1  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.062    9.4   0.0       0.09    8.8   0.0    1.1  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.095    8.6   2.8       0.14    8.1   1.9    1.1  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.8   0.0   8.3e-86     5e-84      36     279 ..      21     265 ..       3     270 .. 0.92
   2 !   88.5   6.2   1.4e-27   8.1e-26     319     612 ..     279     580 ..     265     583 .. 0.87

  Alignments for each domain:
  == domain 1    score: 280.8 bits;  conditional E-value: 8.3e-86
    TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgd..vllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGsp.eeavkffselg.lpcPenynpadFvlkvl 279
                  ++k++l ++sG a++G+++Av+G+ G GKtT l+al +r    + +s +  +   G+k   + +++  ++++qdd+ +p ltvre+L+f a+lrl    +k+++++rve++l e++L kc dt+ig  g v+g+SgGerkR+ +a+el+++P++L+cDEPTsGLDs +a  ++ vL++l++  g+ +i++iHQPss+++++fd +++l+ Gr+vy G+  + a+++f+++  ++cP +ynp+d+ ++  
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSENsrISWGGQKWS-SALKRCVGFIEQDDVTFPELTVREALTFAARLRLTG--SKESREQRVEQLLGEMKLGKCSDTLIG-GGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTeAGMCIICSIHQPSSQVYNQFDDLCFLDAGRCVYFGKSgNTAIDYFQTVTdMKCPGQYNPPDWFMEQA 265
                  689**************************************9998877655777788887.99*********************************9..799************************.999*************************************************86269*********************************8625689***998769************9875 PP

  == domain 2    score: 88.5 bits;  conditional E-value: 1.4e-27
    TIGR00955 319 kekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglk.sgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie..lleantteecps.......sgeeiLeelsfeaadlaldllilvvlilvfrllaylalrir 612
                  +++++ +++ n++   ++ sf+ q+lv++ Rs++++  +  l +   +q i+++v++g++++g + +++ + ++ ++ F+ll+   +  +++v+ vf ++   ++++   ++++  +Yy+ak+l+  P+l il +l ++ +Y +  +k  ++++fl +++   +v nv  s+g+ +++ +++    +sv  + ++ +  f+Gff+  +s+   ++w+ ++    Y++    + + +  ++++  + ++++ ++c++       s  eiLe+++++ + +  ++++l+ +++   +++y+  + +
  MMETSP1174-20130828|11708_1 279 TTEDFHEGDLNVQDPGFAVSFYEQMLVIFQRSWVKTKVSK-LNTPFYMQQIAIGVIMGILFIGLGDDESDIFSRVSFSFNLLMGALYLPIMEVLFVFLEDSLTLRKDLLAKAHHPVSYYIAKILSVTPVLAILLVLITMSTYTLGFYKyGSVQQFLAVMAAQFVVGNVFASLGICIASFVKNPAYLMSVTMICLVWLFAFSGFFVPIGSIMPGLRWMVHINPASYGFALFFQCILTVGRTVDfsCSDQSNYDTCNEvdsdgmiSPDEILEHYDLD-TPIGVCFAVLIGMYVGCSIAGYFFFQQK 580
                  4577888888888899******************986555.55556778999******************************************************************************************997665167899********************************************************99***************777777776666666776666655566542111111336899999999.999*******************988766 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   0.0   1.9e-64   1.2e-62     763    1035 ..       9     285 ..       5     292 .. 0.88
   2 !   52.7   9.8   5.1e-17   3.1e-15     396     605 ..     295     505 ..     288     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: 209.9 bits;  conditional E-value: 1.9e-64
    TIGR00956  763 rdltyevki.kkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvit.egdrlv.ngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkl.adaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLe......vigaaagakanqDyfe 1035
                    +lt +v++  +e++++Ld ++G  + G++ A+mG  G Gktt l +L +R++  ++  e+ r++ +g+k  s+ +R +G+++q+D+  ++ tvreaL f+A+lR +   sk+ +++ ve+++  ++l +  d ++G     G++   Rkr+ i+ eL+ kPk l   DePtsGLDs ta +i+ +l+ l ++aG  i+C iHqPs  + ++FD L +l  G + vYfG+ G   +t i+YF++    kcp ++nP +w +e       ig+  +  + +D++e
  MMETSP1174-20130828|11708_1    9 SNLTAHVQLpTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMsENSRISwGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTG--SKESREQRVEQLLGEMKLGKCSDTLIGGGLVrGVSGGERKRVCIATELISKPKFL-LCDEPTSGLDSETALVIIGVLQGLtTEAGMCIICSIHQPSSQVYNQFDDLCFLDAG-RCVYFGKSG---NTAIDYFQTVTDMKCPGQYNPPDWFMEqavndkLIGVRMEVPTTEDFHE 285 
                   678888887346899**************************************999861456776478899999*******************************998..56777788******************976657********************766.58********************973589*************************987.*****9877...588*********************9973333334666666666677766 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 5.1e-17
    TIGR00956 396 ytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiaslyearpi.vekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreag..rFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafe 605
                  ++vsf++q+ +i++R++ + k ++  t +  +++i+ ++i++ +f  l  ++sd+++r++  f  l+   +  ++e++ ++ + ++ ++k      +hP++  +a ils  Pv  i  v+ ++ +y l  + +  +  +F+  +   f+   v ++l  +i++++k+ +  m+++ + l+ l+ ++gf +p  +i+  ++W+ ++nP +y f 
  MMETSP1174-20130828|11708_1 295 FAVSFYEQMLVIFQRSWVKTKVSKLNTPF-YMQQIAIGVIMGILFIGLGDDESDIFSRVSFSFNLLMGALYLPIMEVLFVFLEDSLtLRKDLLAKAHHPVSYYIAKILSVTPVLAILLVLITMSTYTLG-FYKYGSvqQFLAVMAAQFVVGNVFASLGICIASFVKNPAYLMSVTMICLVWLFAFSGFFVPIGSIMPGLRWMVHINPASYGFA 505
                  89*******************99887776.57999************************9877666667788999998887666651677777889*****************9999988888887765.55443311444444445555555555556789999999999***************************************996 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   9.3e-28   5.6e-26       9     201 ..      21     219 ..      14     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 9.3e-28
    TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkk.skkekekkkkevlekvglekklkkk.....iyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelk.eegktiiivtHdp..evaekad 201
                  ++k+il+ +s + ++G+++a++G  G+GK+t+L  lg+  ++   +++++++++++   +k s+ l+  +g++ q+     + tv+e l+ a  l+ + sk+++e++++++l +++l k+ ++      +  +sgGe++Rv +a  l+ +++ +l DEPt+ LD+++  +++ +l+ l+ e+g+ ii+  H+p  +v +++d
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDP---SIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQPssQVYNQFD 219
                  689*******************************99976555...58999999999***********************************998876615556677888999*****888887612222578********************************************98626689999999*86224555555 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.6e-27   9.9e-26      13     218 ..      22     237 ..      12     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 1.6e-27
    TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltr.....LyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraea.eerieealarlglaeraeek.....vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlv..deveaedrlvvlhkGkvlaqGaaae 218
                  ++++ld++s + ++g+++a++Gp G Gk+t +s l       ++ +++++i+  G++ ++a k+    +G + q+     +l+v++ l++ a L+  +++e+ e+r+e++l +++l + +++      vr ++GG+r+rv ia  l+ +Pk LL De+t GLD e+   ++  ++ l++e+g++++ + h    +  ++ d+l  l+ G+ +  G++++
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrldpsIVMSENSRISWGGQKWSSALKR---CVGFIEQDDVTFPELTVREALTFAARLRLTGSKESrEQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPssQVYNQFDDLCFLDAGRCVYFGKSGN 237
                  5789****************************99975111113456699999999888766554...58*************************999888772579**********9998874344449*************************************************************8511345677**********999998776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0     4e-27   2.4e-25      16     201 ..      21     209 ..      10     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 4e-27
    TIGR02982  16 lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvl.gkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldy.....kpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd 201
                   +k +l  i+ + ++g+++ + Gp+G+Gktt+l+ +g      + ++ +  +++++   +k   +++r +G+i q    +  lt+++ + +a+ l+ + s++ +++++e+ll ++ l++  d        + +sgG ++rv ia  l+++Pk++l dePt+ ld++++  ++ +lq l+ e g++i+   h 
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGN---RLDPSIVMSeNSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQ 209
                  468899***************************98885...3445555541556999999999********************************************************76652112257899*****************************************************998886 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0     1e-26     6e-25       6     198 ..      14     211 ..      11     228 .. 0.87

  Alignments for each domain:
  == domain 1    score: 86.0 bits;  conditional E-value: 1e-26
    TIGR02673   6 kvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkke.eeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkeln.krGttvivathdee 198
                  +v++   ++ ++L+ +s + + g+++ ++G+ G Gktt+l  l +++ ps   v  +++ ++   ++  ++l+r +g + qD   +++ tv e + +a ++r + + e+ ++rve++l  + l +  ++l      + +sgGe++Rv ia  +++kP+ ll DePt  lD+e++  i+ +l+ l+ ++G+ +i + h+ +
  MMETSP1174-20130828|11708_1  14 HVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPS--IVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGSkESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQPS 211
                  566666788899*******************************9999997..68899999999999****************************9999888766540556789***********999986222225789*******************************************986268*********854 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   1.9e-26   1.2e-24      13     226 ..      22     234 ..      12     248 .. 0.84

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 1.9e-26
    TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrsl.nrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksal..sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarv...sdktaffleGelveege 226
                  +k+ l+ ++ + ++ +v a++Gp+GcGk+t+l +l nrl   +  +  + ++ + g++  +      +l++ vG + q    fp  ++ + ++++ rl+ + +k++ +++ve+ L +  l  +  d l   +l  ++sGG ++r+cia  l  +P+ lL DePts LD++++  i  ++q L ++  + i+    q +++v    d   f+  G+ v  g+
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALgNRLDPSI-VMSENSRISWGGQKWSS------ALKRCVGFIEQDDVTFPeLTVREALTFAARLRLTGSKESREQRVEQLLGEMKLG-KCSDTLIGGGLvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPSSQVynqFDDLCFLDAGRCVYFGK 234
                  45678999999************************66666665.66777788888876654......59**************988*********************************98.89999988765338************************************************9888887765555555511156677777777776655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   2.6e-26   1.6e-24       8     207 ..      25     234 ..      20     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 2.6e-26
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPd...sGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgely.glpkkeaeeraeellelvelkeaadkk.....vktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthy.leeadkladrvaiidkGkiiaedt 207
                   +dg++ + + g+v++++GP G GKtt ++ L   l P+   s ++r+  +   + ++ ++r +g + q+     +Lt re l++ ++l    +k+ +e+r+e+ll  ++l + +d       v+  sgG r+r+ +a+ li++P+ l  DEPt+GLD++t+ +i  +++ l +e g+ i+ + h+   ++ +  d +  +d G+ + ++ 
  MMETSP1174-20130828|11708_1  25 ILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmSENSRI-SWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRlTGSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEaGMCIICSIHQpSSQVYNQFDDLCFLDAGRCVYFGK 234
                  5789999999****************************9443444555.4666788999*****************************96255788899***************998622222789**********************************************999899999887762456677778888888888777665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.2e-25   7.2e-24       4     185 ..      22     208 ..      20     211 .. 0.86

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 1.2e-25
    TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkk.valvlqdpddqlfaadvdedvafgp.lnlGlseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.eeGktvvisth 185
                  +  +l+g++ +++ g+v+a++G+ G+Gk+t+l+ l   l P    v+ + + + ++ +   ++ k+ v+++ q  d  +   +v e ++f+  l l +s++  e+rv++ l  +++ +  + ++     + +sgGe+krv ia+ ++ +p++ll dePt+gld++ a  ++ +l++l+ e+G+ ++ s h
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPS--IVMSENSRISWGGQKWSSALKRcVGFIEQ-DDVTFPELTVREALTFAArLRLTGSKESREQRVEQLLGEMKLGKCSDTLIggglvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIH 208
                  5679*************************************7..699********988777665551555544.355556789*******86268999*****************99999876422222789********************************************96378******999 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   1.9e-24   1.1e-22      12     233 ..      20     238 ..      12     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.9e-24
    TIGR02315  12 pngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaak.....radqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvd.lakkyadrivglkageivfdgassel 233
                  +++k++l+ ++ + + G+++av+G+ G Gk+t+l ++ +  ++  + ++ e++ ++   +k    l++ +g+i q+     +ltv e +     ++   l+  l+  +e+ +++  +lL ++ l +  ++      +  +sGG+++Rv ia  l+ +pk +l+DEP++ LD +++  ++ +l+ ++ e g+ +i+++Hq +  + +  d +  l ag+ v+ g+s + 
  MMETSP1174-20130828|11708_1  20 GENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDP--SIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREAL-----TFAARLR--LTGSKESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPSsQVYNQFDDLCFLDAGRCVYFGKSGNT 238
                  67899*****************************999654444..56888889999888999999***********9999999997754.....3344444..3344555566667777777777766652222257889**********************************************************965134555678999999999999988665 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.3e-24   7.6e-23      16     202 ..      21     210 ..       9     228 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.3e-24
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskk.skkeakerakellekvglekrinkkps.....elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdl 202
                  ++ ++l+g+s + ++g+++a++G +G Gk+t+l  lg   +p+   v+ +  ++s   + + ++   + +Gfi q    ++++t+ e +++ + ++ + sk++ ++r ++ll +++l k  +   +      +sGGer+rv ia  l++kPk +l+dePt+ ld++ta  i  +l+ l +e +++++   h+ 
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSI--VMSENSRISWGGQ-KWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLIGgglvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQP 210
                  45689***************************999998666652..4445555555555.555555689*********************99988766155556778999*********99986542222269****************************************************99999974 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   1.9e-24   1.1e-22      12     222 ..      21     236 ..      10     245 .. 0.80

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 1.9e-24
    TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap.....daGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladr.....dlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnl.aasvcdhvvvldgGrvvaaGppa 222
                  ++++i+d++  +a +G++ +++GP G+Gk+t+l+ l   l p     ++ +++ +g+   +  +    r v  +eqd  + ++l+vr+++ +     r +++++ ++ ++ v+++l++++l + +d       +  +sGGer+rv +a  l  +Pk+ll dePt  ld ++ l ++++++ l+ + g+ ++ ++h  +    +  d++  ld+Gr v  G+  
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPsivmsENSRISWGGQKWSSALK----RCVGFIEQDDVTFPELTVREALTFA---ARLRLTGSKESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQPSSqVYNQFDDLCFLDAGRCVYFGKSG 236
                  4689*****************************9998777761111144555555554443333....45899***************99875...4666777777777888888888888877776221115789*********************************************983567889999**9765156789***********9988765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0     2e-24   1.2e-22      23     216 ..      36     235 ..      15     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 2e-24
    TIGR02142  23 kgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLg...i....ehLle.RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledGrvkaagkl 216
                   +v+a+ G  G+Gkt+++ ++   + p    iv+ ++   +   +   ++ kR vg++ q+   Fp l+vre L++  +   + +++ +e++v +lLg   +    + L+   l++ +sGGe++Rv i+  l+s+P+ Ll DeP + LD++    i+  L+ l+ e  + i+   H+  + v    d +  l++Gr   +gk 
  MMETSP1174-20130828|11708_1  36 GQVMAVMGPTGCGKTTFLSALGNRLDP---SIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGSKESREQRVEQLLGemkLgkcsDTLIGgGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPsSQVYNQFDDLCFLDAGRCVYFGKS 235
                  4799************99887654433...4444444433333334788999************************999777777789999*****9833321121334432467889******************************************************99999725799999*********98877765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   2.8e-24   1.7e-22      12     219 ..      22     238 ..      12     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 2.8e-24
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiyelFP...vlkemlkRrgGdL....sGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaill.veqvldfaleladrylvlerGevvaegekeel 219
                  + ++l ++s ++++g+v+av+G  g Gktt+l al   l+ +    e +  +   +k ++  k+ ++++ q    fp+ltv+e l+ +++ + +  +++ ++++ +l     + k   +  gG L    sGG ++ + ia  L+++Pk+ll DePt G+       i  v++ l++e ++ i+  + q  + +++  d ++ l+ G+ v  g++ ++
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGsKESREQRVEQLLGemkLGKCSDTLIGGGLvrgvSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICsIHQPSSQVYNQFDDLCFLDAGRCVYFGKSGNT 238
                  4679******************************99888776544444444445677788999**********************999887765523333444444444110333444555776555559***************************************************9983578899999**************999887765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.8e-23   1.7e-21     340     519 ..      15     197 ..       4     210 .. 0.75

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 2.8e-23
    TIGR02868 340 lsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldpl.....kGevtldgvsvaslsesevrrvvsvlaqdaHlF.dttvreNlrlar.......pdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaee 519
                  ++    +++++l+g+s  ++ G+ +av+G++G+GK+t l++l   ldp+     + +++  g +     +s+++r+v +++qd   F + tvre l +a+       ++  ++ ++++L + +L++  + L +G      +  + +SGGer+R+ +A  L+++ + ll DEPt +LD et+  ++  L   ++
  MMETSP1174-20130828|11708_1  15 VQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmseNSRISWGGQKW----SSALKRCVGFIEQDDVTFpELTVREALTFAArlrltgsKESREQRVEQLLGEMKLGKCSDTLIGG------GLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTT 197
                  4444455666*********************************9999852222245555555333....458***********9999567******99762222222455777777777777777776665444......234679***********************************999988874333 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   2.2e-22   1.3e-20      13     197 ..      20     209 ..      11     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 2.2e-22
    TIGR00960  13 gaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lriiGvkgreieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevn.raGttvlvathd 197
                  g ++  ld+++ + ++G+++ ++G++G+Gk+t+l  + ++  ps   ++ ++  ++   ++  + l+r +G + qd   + + tv + + +a  lr+ G k +  e+rv++ l ++ l +   +     l   +sgGe++rv+ia  +++kP+ ll dePt+ ld+e+++ i+ +l+ +  +aG+ ++ + h+
  MMETSP1174-20130828|11708_1  20 GENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSI--VMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAarLRLTGSK-ESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQ 209
                  4566789*****************************999999974..66677788888888899************************9998335566654.45678999999999998777652222246789*******************************************986379****999996 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   2.9e-22   1.8e-20      20     222 ..      22     233 ..      13     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 2.9e-22
    TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaG.....fvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkq.skaliaervadalklvqlsda.....aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd.ealvladkillmkeGslialG 222
                   +++ld +s    +G+++a++G++G+Gktt l a+        v ++  r+  +++  +     kr ++++ q+   fp l+v e ++f  r r   sk   ++rv + l  ++l+       +  l   +sGG ++rv +a  l+ +p+ ll dep s ld++    +   l+ l  e   + +++  h+ + +     d + ++  G+ + +G
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrldpsIVMSENSRISWGGQKWS--SALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCsdtliGGGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEA-GMCIICSIHQPSsQVYNQFDDLCFLDAGRCVYFG 233
                  689*****************************998751122266667799999999765..568****************************99762566778999999877777665101224557889**********************************9999999999998885.5677777776440444555666666666666655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0     8e-22   4.8e-20      15     193 ..      21     208 ..      10     231 .. 0.80

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 8e-22
    TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaG.Le....kqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkkl.kreevaerveelLelvglsgseekyPg.....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvth 193
                  e+ t+l+ is s + g +++++GP GCGktt+L ++   L+     +++ +i  gg++ +  ++ kr  G++ q  + fP+ltv+e +++  + + + ++e +++rve+lL  + l + ++   g      +sGG ++rv +a  l+ +P++LL DeP s LD+     +   l+ l  + g+  i   h
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrLDpsivMSENSRISWGGQKWS--SALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLIGgglvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIH 208
                  567899***************************998632331111345556666666554..5679***********************9988776515777899***********9988876542222268*******************************988777777777777666666665555 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   9.4e-22   5.7e-20     333     513 ..      20     204 ..       4     219 .. 0.75

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 9.4e-22
    TIGR02857 333 grk.palkevsltvepgelvalvGaSGaGKstllklllgfvept.....eGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllv 513
                  g++  +l+++s +++ g+++a++G+ G+GK+t l++l   ++p      + +i+ +g+   +++ +++++ ++++ Q  + f++ tv+e + +a +   +   +   +r++      +l++  +t iG +  +g+SgG+r+R+ +A  l+++ + ll DEPt+ LD+et+  ++  l+ l++++ + ++
  MMETSP1174-20130828|11708_1  20 GENkTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmseNSRISWGGQ---KWS-SALKRCVGFIEQDDVTFPElTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKCSDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCII 204
                  4444799******************************998876422211333343555...444.346778******987765449999999988766655444444555544445678888999998763699***************************************9999999855443333 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.4e-21   8.7e-20      14     207 ..      24     227 ..      13     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.4e-21
    TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaG.le....kpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkk.dkakikakveellelvqleklgdry.....psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe.ealevadrivvlekG 207
                  ++ld ++ + +tG+++a++Gp+G Gk+t+l ++   l+      ++ ri   G+  +  ++ +r +Gf+ q+   f+ ltvr+ ++f  ++r + +k+   ++ve+ll  ++l k +d          +sGG+r+rv +a  l  +p+ ll dep + ld++    +   l+ l  e  +  +   h+ + +  +  d++  l+ G
  MMETSP1174-20130828|11708_1  24 TILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrLDpsivMSENSRISWGGQKWS--SALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPSsQVYNQFDDLCFLDAG 227
                  6789999999********************998752331111457889999999876..56799****************************66155566789**********9999876222215689*******************************9987777777777777777766666665431344555555555555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   8.4e-21   5.1e-19      12     232 ..      22     236 ..      14     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 8.4e-21
    TIGR03005  12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemg.farefadrvlffdkGkiveeGkpd 232
                  + t+ldg++ + ++G+ +a++Gp+G Gk+t l  l   +++d  si +        + ++ ++    +k   +++  +G++ q    fp  tv + +t a  l +  ++   e+r  +ll  + l++  d+l        +sGG+++rv ia  l  +pk ll de+ts ld e    ++ vl+ l++e  + ++   h+      +  d ++f+d G+ v  Gk +
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALG--NRLD-PSIVM--------S-ENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPSsQVYNQFDDLCFLDAGRCVYFGKSG 236
                  679***************************998764..3444.44544........2.344455556788889999**********************988777666777889********999*9999986222214579**********************************************************965145677789*********9999876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   3.1e-21   1.9e-19       1     161 [.      41     210 ..      41     237 .. 0.82

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 3.1e-21
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt.....evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvp.kaeikervkeaLelvqleefakrkp.....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                  ++Gp+G+Gktt L  l   ++ld   ++ ++  ++       +a kr v+ + q+   fP +tv e + f+ ++r ++ k+ +++rv+++L  ++l + ++  +       +sGG r+rv +a  ++ kPk LL Dep s LD +    +   l+ l  + G+ ++   h  
  MMETSP1174-20130828|11708_1  41 VMGPTGCGKTTFLSALG--NRLDPSIVMSENSRISwggqkWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGsKESREQRVEQLLGEMKLGKCSDTLIggglvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQP 210
                  58***********9997..566665566666666522221357899*************************99998862566899************998876522222789*********************************999999999999999999999998875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   4.6e-20   2.8e-18      15     195 ..      23     211 ..      14     245 .. 0.81

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 4.6e-20
    TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavaged..vlknslevrkniGylPehnPlyldlyvreylefsaalyklk.grklkkrveelielvGlkaeqhkkig.....alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqev 195
                  + +ld +s +a+ G+++  +GP G Gk+t +  l   l ++    + + ++    k s + ++ +G++ + +  + +l vre l f a l     ++ +++rve+l+ ++ l + +   ig      +s G r+rv +a  l+ +Pk l+ dePt+Gld +  + i  v++ ++ +  + +   i q  
  MMETSP1174-20130828|11708_1  23 KTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSENSRISwgGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGsKESREQRVEQLLGEMKLGKCSDTLIGgglvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPS 211
                  5689**********************************99865555444431145778999***************************9875540356889***********99999888633333589999****************************************99998776666665543 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.9e-19   1.1e-17      22     230 ..      21     230 ..       6     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.9e-19
    TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd.lrlvqkfaqrvlvldeGqiv 230
                  + k++ld++s s ++G+ +a++G +G+Gk+t+   l     P    v+ +   ++   +k   a++r v ++ qd ++   p  +vre ++   r   + ++  r++r+++ll +++l +  ++l    l r +sGG  +r++ia  l  +Pk+++ de  s ld    ++i+  l+ l  e+G++++   h   + v++  + +  ld G+ v
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDP--SIVMSENSRISWGGQKWSSALKRCVGFIEQDDVT--FPELTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKcsDTLigGGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQpSSQVYNQFDDLCFLDAGRCV 230
                  6789**************************976554333333..23444455555555667789***********875..69*********99998888899999************965213332246899******************************************************9998887256789999999999999987 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   3.5e-19   2.1e-17      11     228 ..      21     234 ..       6     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 3.5e-19
    TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevt...sGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGd 228
                  e+k+iL+g++ + ++G+v a+mGp G Gk t  ++l  + + +++   + +i++ gq+ ++       ++ + +  q  +  p ++++e l  a+  +    g++e +  +  ++l  +++l +++ +l+   l  G sGGe+kr  i   ++ +Pk+ + De  sGlD ++  +++ +++ l +e   ++i + h+     + + d +  l +Gr v  G+
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVmseNSRISWGGQKWSSA-----LKRCVGFIEQDDVTFPELTVREALTFAARLRL--TGSKE-SREQRVEQLLGEMKLGKCSDTLIGGGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSiHQPSSQVYNQFDDLCFLDAGRCVYFGK 234
                  689*********************************99877666411256788888876543.....34455556899*************99988777..56665.5677778888899**************************************************************9998655555553666666666778888888888887665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   7.4e-19   4.5e-17      11     187 ..      21     210 ..      11     219 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 7.4e-19
    TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRila.....GLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.....seqktveealekvgLsgledlp.....vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat.hqd 187
                  +++++l g+s +  +G++++v Gp G GKtt L  l       ++ +e+ ++++ +++ +     l++ + ++   d   +eL+++E L+f a+l       s ++ ve+ l ++ L +++d++     v+ +s G ++R+ +a  l+sk +  + DEPt  lD e+  ++  +l+  +++ G+ ++ + hq+
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGnrldpSIVMSENSRISWGGQKWSSA---LKRCVGFIEQDDVTFPELTVREALTFAARLRLtgskeSREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSiHQP 210
                  56899****************************887621111566778999***98886555...5688**********************9998643444344459**************996233336889**************************************************9988762444 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     1e-18   6.3e-17      12     207 ..      22     234 ..      13     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1e-18
    TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllkllt.....GllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlll.....glpesrieevlkivdlentekk.....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp.ekGitvilsshi.lsevelladhiGiiseGklkyekk 207
                  ++++++ +s + +  +v +++Gp G+Gk+t l  l       ++  ++ +i   g++w+    + +G + ++  ++ +lt re l   + l+     +  e+r+e++l  ++l + +        ++  s G ++r+ ia  l+ kPk+l+ dePt Gld      +  +++ ++ e G+ +i s h   s+v +  d + ++  G+  y +k
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGnrldpSIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRltgskESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQpSSQVYNQFDDLCFLDAGRCVYFGK 234
                  7899****************************99872222257778899**********9999999998889999**********9887654221113456688999999999877655111115778999*****************************999888888888875267*********83468999999999999999888665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.9e-18   1.7e-16      18     220 ..      23     230 ..      10     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.9e-18
    TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelent.pkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe.mdvvkricdevavidkgeli 220
                   + ld +s     gq++ v+g +g gk+t++  +     p    v+ +   ++   +    + +r +g+i q    +   tv + +++   l  t +ke  +++v++ll  + l++  d+         +sgg+++rv ia  l s+pk llcde ts ld  t+  i+ +l+ +  + g+ i+   h+    v +  d +  +d g+ +
  MMETSP1174-20130828|11708_1  23 KTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDP--SIVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQpSSQVYNQFDDLCFLDAGRCV 230
                  467899999999*****************99876443344..4577777777777777778889********99999999999998887777654378999***************99986221114579****************************************************9998886234566666667777777665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   7.1e-18   4.3e-16      16     219 ..      22     235 ..      10     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 7.1e-18
    TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlg.....lispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfgl.streieevipsllefarleskadvr.....vadlsggmkrrltlaralindpqllildepttgldpharhliwerlrslla.rgktilltthlm.eeaerlcdrlcvleagrkiaegrp 219
                  +k +++ +s +  +g+++ ++gp g+gk+t    +       ++  ++ +i+  g++  +   + +  +g + q d   +e+tvre l    r     s    e+ + +ll   +l   +d+      v  +sgg ++r+ +a+ li  p++l+ dept+gld  +  +i   l+ l +  g  i+ + h    +     d lc l+agr +  g+ 
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrldpsIVMSENSRISWGGQKWSS---ALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTeAGMCIICSIHQPsSQVYNQFDDLCFLDAGRCVYFGKS 235
                  6899*************************9865554400010555555666655554443...345679*****************99877775444144557999**********9999986222225689********************************************987258899999997515667889**********9988875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.7e-17     1e-15       3     205 ..      27     230 ..      25     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1.7e-17
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltkts.GeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivea.leavgLeeaeevlk..kypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl.gvvaeladevavmekGkiv 205
                  ++++ s+++g+v+a++G  G+Gk++  +a+ + ld+ ++ ++  +i   g++ ++    +r +++i q+ ++   P lt++e l+ + + +   sk+++e+ ve+ l ++ L +    l        +sGG  +Rv ia  l++++ +l+ DePt+ lD  +++ ++  l+ l+ + g+ i+   h   + v +  d+++ +++G+ v
  MMETSP1174-20130828|11708_1  27 DGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSEnSRISWGGQKWSSA--LKRCVGFIEQDDVT--FPELTVREALTFAARLRLTGSKESREQRVEQlLGEMKLGKCSDTLIggGLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPsSQVYNQFDDLCFLDAGRCV 230
                  567778999*********************99999998776516888999887654..5678999***9876..5999*******99999999998888776665167999*998877751256788*******************************************************98887515688888999999999988 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     2e-17   1.2e-15      20     209 ..      32     231 ..      21     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2e-17
    TIGR01277  20 sveaGervailGesGaGkstllnliaGflepa...sGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnav.qkekvedvarqvGiadylerl.....peelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls.daaaiasqvvvvedGkikv 209
                  s ++G+ +a++G++G Gk+t+l+ +   l p    s + ++    +  s+  +r v  + q++  f+ ltvr+ +++  +  l  + + ++++ve++  ++ +++  + l        +sGG+r+rv +a  l+ +   ll dep s ld      ++ +++ l+ e  + ++   h++s ++ +  +   +++ G+  +
  MMETSP1174-20130828|11708_1  32 SAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTGSKEsREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPSsQVYNQFDDLCFLDAGRCVY 231
                  567899*******************999999522245556666666778899*********************8877666555444441456799999999999888776111115679****************9999***************************************9725667889999999998765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   1.7e-17     1e-15     477     683 ..      20     233 ..      11     239 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.7e-17
    TIGR03375 477 eeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdir...qidpadlrrnigyvpqdvtLf.yGtlrdNialgap....aaedeellraaelaGvtefvkkhpkGldlqiger.GesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrts..lLelvdriivldkGrivadG 683
                  +e+k+ L+ +s + + G+ +a++G +G+GK+t l  l + ++p+   v+ ++  i+   q   + l+r +g+++qd + f   t+r+ ++++a+      ++++  r+ +l G  ++     k  d+ ig +  +++SgG r+ v +a  l+++p+ ll DEPts lD+++   ++  L+ l++  ++ ++ + H+ s  + +  d +  ld Gr v  G
  MMETSP1174-20130828|11708_1  20 GENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSI--VMSENSRISwggQKWSSALKRCVGFIEQDDVTFpELTVREALTFAARlrltGSKESREQRVEQLLGEMKL----GKCSDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTeaGMCIICSIHQPSsqVYNQFDDLCFLDAGRCVYFG 233
                  56788899999999*******************999999998874..555555554333667889**********99999356********99853323344455555555554443....456788887653589********************************************9998557777888898643388899999999999988766 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   1.1e-16   6.8e-15       2     176 ..      32     213 ..      31     235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 1.1e-16
    TIGR03771   2 svdkGellgllGpnGaGkttllrai...l..glikvakGsvkvagks.srkgrreiGyvpqrhefawdfp.idveqtv.lsGragliGllrrpkkadfaavadalervklteladrpvG.....elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag.egtailmtthdlaea 176
                  s+++G++++++Gp G Gktt+l a+   l  +++ +++ ++  +g++ s+  +r +G++ q       fp + v++++ ++ r +l G     k++  + v++ l ++kl + +d  +G      +sGG+r+rv +a  l  kp+ ll dep +Gld  +   ++++++ l++ +g++i+ + h+ +  
  MMETSP1174-20130828|11708_1  32 SAHTGQVMAVMGPTGCGKTTFLSALgnrLdpSIVMSENSRISWGGQKwSSALKRCVGFIEQDDV---TFPeLTVREALtFAARLRLTGS----KESREQRVEQLLGEMKLGKCSDTLIGgglvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTeAGMCIICSIHQPSSQ 213
                  5799******************998333233578888999*99997625566788****99753...4553566665426777777775....334445567777777777777776663322269********************************************97526999**999986544 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   9.7e-17   5.8e-15     344     557 ..      14     234 ..       2     240 .. 0.79

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 9.7e-17
    TIGR02204 344 kfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPq.....sGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryG.rpdasdeeveaaakaaeadefis..klpeGydtllGergvt.LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvia..hrLa.tv.lkadrivvldkGriveqGt 557
                  + + P+  +++ ldg++ + ++G+++a++GP+G Gk+t l+ l    dP+     + +i+ +G++      + l++ + +++qd + f +  v+e + +  r+  +     + +++ + ++++   kl +  dtl+G   v+ +sGG ++r+ ia  ++ + + LL de ts Ld+e+   +   l+ l ++    +i   h+ +  v  + d +  ld Gr v  G+
  MMETSP1174-20130828|11708_1  14 HVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmseNSRISWGGQKW----SSALKRCVGFIEQDDVTFPElTVREALTFAaRLRLTGS---KESREQRVEQLLGemKLGKCSDTLIGGGLVRgVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICsiHQPSsQVyNQFDDLCFLDAGRCVYFGK 234
                  567899999****************************************72222245566666554....567999*********99975389999999723333332...3445556666665115666789***99887559**********************************************99998888544665413425679999999999998876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   1.5e-16     9e-15     465     636 ..      22     197 ..      18     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 1.5e-16
    TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekP.....esGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaweaarmagleeDikamPmgl..hTviseg.ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv 636
                   +++Ld +s +++ G+ +a++G+ G+GK t+l  L     P     e+  +++ Gq  +    +a++r +G + Q+   +++ ++ e+++ +a+l l    e  r+  +e+ + +m +g    T+i  g   ++SGG r+R+ iA  l++kP+ ll DE TS LD +t  +++  l+ l  
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPsivmsENSRISWGGQKWS----SALKRCVGFIEQDDVTFPElTVREALTFAARLRLTGSKES-REQRVEQLLGEMKLGKcsDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTT 197
                  679*****************************877555555222227889*****9987....69**********9988887478899999999999998886.66789*********963369997774579***********************************9999988887753 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   3.9e-16   2.4e-14     324     537 ..      16     235 ..       5     240 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 3.9e-16
    TIGR01842 324 lvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlp.....asGsvrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeni...aRfeenadaekvieaaklagvheli..lrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvit.hrps..llelvdkilvlkdGalkafGer 537
                    p +e+k++l gis + ++G+++a++Gp g Gk++    l     p     ++ ++   g   ++w    l + +G++ qd v   e tv e +   aR++  + ++      +   v +l+  ++l k  dt ig g   ++sgG r+R+ +a  l  +Pk+++ DeP + LD+e    ++  l+ l  +  + ++ + h+ps  + ++ d +  l++G+   fG+ 
  MMETSP1174-20130828|11708_1  16 QLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPsivmsENSRISWGG---QKWS-SALKRCVGFIEQDdVTFPELTVREALtfaARLRL-TGSK----ESREQRVEQLLgeMKLGKCSDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSiHQPSsqVYNQFDDLCFLDAGRCVYFGKS 235
                  46788999****************************9887754433300000333333333...4554.5799*******96377778899998733345554.3333....345556677762246677789*9*9763478*********************************************9987766666553887534899*****************86 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.031       1.9      15     332 ..      25      58 ..      14     129 .. 0.61
   2 !   44.6   0.0   2.5e-14   1.5e-12     165     268 ..     146     250 ..     118     256 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.031
    TIGR03269  15 vlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyhvalcekcgyverpskvGekcpkcgeklekeevdfwdlsdklkkrlkkriaimlqrtfalyeedtvlenvlealeeigyeakeavkravelleevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevekekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaG 332
                  +l  is   + G+v+ ++G +G+Gk+ +l                                                                                                                                                                                                                                                                                              l  
  MMETSP1174-20130828|11708_1  25 ILDGISGSAHTGQVMAVMGPTGCGKTTFL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SALGN 58 
                  44445555555555555555555555555............................................................................................................................................................................................................................................................................................44444 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 2.5e-14
    TIGR03269 165 iardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwp..eviedlsdkaillekGeiveeGepeevvakflesvseve 268
                  + r +sGGe++rv +a +l+ +p  ll dept  ld +ta ++  +l+    e +++++ + h p  +v  +  d   +l+ G  v  G++ +    ++++v++++
  MMETSP1174-20130828|11708_1 146 LVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIHQPssQV-YNQFDDLCFLDAGRCVYFGKSGNTAIDYFQTVTDMK 250
                  6799***********************************************************984244.555677889**************9999999999876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   5.8e-16   3.5e-14      17     208 ..      19     209 ..       4     220 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 5.8e-16
    TIGR02324  17 gGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepll.elGvereearakakellarlniperLWslaP....atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak.argaaligifhd 208
                   G +  +l+ +s ++++G+++a++G++G Gk t+l +l +   p+   i++  +  i        ++  +  ++ +g++ q     P ++ +e ++ +++ +l  ++e+ ++++++ll  +++ +   +l         sGGe++Rv ia  li++   LL dePt+ Ld+ +  v++ +++ +  ++g+ +i  +h+
  MMETSP1174-20130828|11708_1  19 TGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPS---IVMSENSRIS----WGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARlRLTGSKESREQRVEQLLGEMKLGKCSDTLIGgglvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTtEAGMCIICSIHQ 209
                  57889999*****************************97776665...4444444443....3444445555689********9*********8876554144456677889********9986655554431111679****************6667888********************9761568999999886 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   1.2e-15   7.3e-14     489     696 ..      18     234 ..      12     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.2e-15
    TIGR00958 489 PsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhky...lhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFiselekg..ydtevgek.GsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLs..tvekadkilvlkkgsvvelGt 696
                  P+  +k +l +++ + + G+v+a+ GP G GK t  + l n  +P    v+ ++ +++    k+   l+r v+ ++q+ v f   +vre +++  +          +++  +++ + e++ g   dt +g      +sgG ++r+ iA  L+ kP  L+ De tS LD+     +  +lq   +++++ ++   h+ s  + ++ d+  +l  g+ v  G+
  MMETSP1174-20130828|11708_1  18 PTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPS--IVMSENSRISWGGQKWssaLKRCVGFIEQDDVTFPElTVREALTFAARLRLTG--SKESREQRVEQLLGEMKLGkcSDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSetalVIIGVLQGLTTEAGMCIICSIHQPSsqVYNQFDDLCFLDAGRCVYFGK 234
                  88899****************************************7..58889999985554433339*************96449****99987655433..34577888999999988776589*9986414568********************************5554455678889999999999888875322667888899998887776665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.2e-15   1.3e-13     491     693 ..      22     233 ..      18     239 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 2.2e-15
    TIGR03796 491 eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeip....revlanslalvdqdivlf.egtvrdnltlwdetipeedlvrAakDAaihdvilarp.ggyeaelaegg..anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr...rRgctciiva.HRLst.i.RdcdeiivlerGkvverG 693
                  ++ +++++s s + Gq +A++G+ G+Gk t   +++ l +  + +i++ +++r +       ++l+ ++ +++qd v f e tvr+ lt+  +        +  ++  +++ + +++ g+ + +l+ gg  + +sGG+r+R+ iA  L+++P  L+ DE ts LD+et   i   l+        cii + H  s+ +  + d++  l+ G+ v  G
  MMETSP1174-20130828|11708_1  22 NKTILDGISGSAHTGQVMAVMGPTGCGKTT---FLSALGNRLDPSIVMSENSRISWGgqkwSSALKRCVGFIEQDDVTFpELTVREALTFAARL-R-LTGSKESREQRVEQLLGEMKlGKCSDTLIGGGlvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQgltTEAGMCIICSiHQPSSqVyNQFDDLCFLDAGRCVYFG 233
                  5678899999999***************99...58889999999999999988765411115678999******75555389*******86553.3.3335667888999999887636778889999866689***********************************998755541115555566654377654232567888888888877665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   6.6e-15     4e-13     352     551 ..      27     233 ..      12     240 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 6.6e-15
    TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvt.reslrksiatvfqdagll.nrsirenirlgredatdeevveaakaaaasdfiekrl.kgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiia..hrl.stvre.adlvlfldqgrliekg 551
                    +s  a++gq +a++gptg gktt++  l    dp+        +     +   +l++++  + qd   + + ++re +++      +    e+ +    + + e +l k  dtl+g    r +sgger+r+ ia  ++     l+ de ts ld et   +   ++ l+ +    ii   h+  s v +  d + fld gr +  g
  MMETSP1174-20130828|11708_1  27 DGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSENSRISWGGQKwSSALKRCVGFIEQDDVTFpELTVREALTFAARL-RLTGSKESREQRVEQLLGEMKLgKCSDTLIGGGLVRgVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICsiHQPsSQVYNqFDDLCFLDAGRCVYFG 233
                  568999************************9999*98765555555554444134699******99876653789****9986443.23333444444444445555543678999987554439************************************************999998644665155654269999******99776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   8.7e-15   5.2e-13     468     673 ..      21     233 ..      13     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 8.7e-15
    TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkst.ltkllqrly....vPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnialak....PaiseekviaaaklaGahdfiselkqGyetevgekG.aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick..grtviiiahrlst..vraadrilvlekGkivesG 673
                  ++ ++l+ +s + ++G+v+ ++Gp+G+Gk+t l+ l  rl     + e+ r+   g+       ++l+r vg + q++v f   ++r+ ++ a      + +e +   + +l G      +l +  +t +g      +sGG r+r+ +a  l+++P+ l+ de ts ld e+  vi   l+ ++   g  +i+  h+ s+    + d +  l+ G+ v  G
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTfLSALGNRLDpsivMSENSRISWGGQK----WSSALKRCVGFIEQDDVTFPElTVREALTFAArlrlTGSKESREQRVEQLLGEM----KLGKCSDTLIGGGLvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTeaGMCIICSIHQPSSqvYNQFDDLCFLDAGRCVYFG 233
                  567899************************9456676787422214566666655554....4567***************65389999987651111344555556666777754....566777888875431469*******************************************9986225667777788654214678888899998887666 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.5e-14   8.8e-13     343     548 ..      20     231 ..       6     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 1.5e-14
    TIGR02203 343 gddrealdsislkveaGevvalvGrsGsGkstlvnll.....pRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvia..hRLst..iekaDrivvlddGkive 548
                  g+++ +ld+is ++++G+v+a++G+ G Gk+t ++ l     p  +  ++ +i   g++      + L+r v ++ qd v F + t+ e ++++++ + + ++e +e   +  l ++  kl +  dt +G   ++ +sGG R+R+ ia  l+     L+ De ts LD+e    +   L+ l  +    +i   h  s    ++ D +  ld+G+ v 
  MMETSP1174-20130828|11708_1  20 GENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALgnrldPSIVMSENSRISWGGQKWS----SALKRCVGFIEQDDVTFpELTVREALTFAARlRLTGSKESREQRVEQLLGEM--KLGKCSDTLIGGGLVRgVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICsiHQPSSqvYNQFDDLCFLDAGRCVY 231
                  567889**************************99877222224455556666666666554....679*********876662669*******998333444444444444444443..455668999*98877659*********************************************999888777534765532145678888888888775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.3e-14   7.7e-13      12     184 ..      29     204 ..      18     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.3e-14
    TIGR01186  12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellki.deqerkekalealklvdleeyedry.....PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktiv 184
                  ++ + + G+++ ++G++G+Gk+t +  l   ++P+   i +  ++ +    ++     ++ ++++ q+   fP  t+ + ++++ +l    +++ r+++  ++l  + l +  d+         +sGG ++rv +a  l  +P+ ll de+ s ld  +   +   l+ l ++    i+
  MMETSP1174-20130828|11708_1  29 ISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPS---IVMSENSRISWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCII 204
                  5566789******************9997778998...5555555556666777788899************************99976525677888888999999998888875222225789*******************************87766666666666666665555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   7.5e-14   4.5e-12       2     173 ..      27     208 ..      26     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 7.5e-14
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekpt.....sgavilegkeitepgpdrmvvf..qnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrp.....eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvth 173
                  ++++ + + g+ ++++g +gcgk+t+l  +     p+     +  ++  g++      +r v f  q+   +p ltvre +++a    + + sk+ r++ ve+ +  + l + +d  +       +sgg ++rv ia  l  +pk ll dep   ld+ t   +   l  ++ ea + ++   h
  MMETSP1174-20130828|11708_1  27 DGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmseNSRISWGGQKW-SSALKRCVGFieQDDVTFPELTVREALTFAAR-LRLTGSKESREQRVEQLLGEMKLGKCSDTLIggglvRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSIH 208
                  677888899******************99887777752222133444555554.55678999886688899***********9975.5667788899999************99987622222579*******************************999888888888888888777776666 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   2.3e-13   1.4e-11    1228    1398 ..      19     194 ..       3     214 .. 0.75
   2 ?   -2.2   0.1       1.7     1e+02      61      93 ..     453     486 ..     452     497 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.3e-13
    TIGR01271 1228 teagravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiq.idgvswnsvtlqkw....rkafgvipqkvfil.sgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyv..lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkq 1398
                   t + +++l+ +s s ++gq + ++g tg+gk+t+lsal   l+    ++    +sw     qkw    +++ g i q    +   t r  l   ++          e+   + + e   +k    l+ gg v  +s g ++ +c+a  ++sk k ll dep++ ld  t  +i   l+ 
  MMETSP1174-20130828|11708_1   19 TGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSIVMSeNSRISWGG---QKWssalKRCVGFIEQDDVTFpELTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKCSDTLIGGGLVrgVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQG 194 
                   678899********************************76554333222023355543...44411115678****98777625699****99999887776555555555555677789999********976799******************************999988777654 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.7
    TIGR01271  61 lasakkkpklln.alrrcflwrflfygillylge 93 
                  +as  k+p  l      c++w f f g ++ +g 
  MMETSP1174-20130828|11708_1 453 IASFVKNPAYLMsVTMICLVWLFAFSGFFVPIGS 486
                  57778999765505568**********9987765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     1e-12   6.3e-11      25     200 ..      34     211 ..      20     238 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 1e-12
    TIGR02323  25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrsr.elellalseaerrlllrtewGlvhqnprGl.rmevsaGanigerllavgarhyGkiraaakwlekveidaari......kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlav 200
                  + G+v++++G +G Gk+t+l+al +rl ++      ++ sr +    + s a      r+  G+++q+   +  ++v      + rl  +g++   + r  ++ l ++++ +           +  sGG ++r+ ia +l+++p++++  ept Gl s  a ++  +l+gl +e+g+++i   h   
  MMETSP1174-20130828|11708_1  34 HTGQVMAVMGPTGCGKTTFLSALGNRLDPSIV---MSENSRiSWGGQKWSSAL----KRC-VGFIEQDDVTFpELTVREALTFAARLRLTGSKESREQRV-EQLLGEMKLGKCSDtligggLVRGVSGGERKRVCIATELISKPKFLLCdEPTSGLDSETALVIigVLQGLTTEAGMCIICSIHQPS 211
                  679************************99754...333332134444455554....445.8*****999652789999999*********977666555.456666666543212247778899*********************9999******99999887789*************9999554 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0014     0.083     333     369 ..      21      57 ..      13      80 .. 0.79
   2 !   29.3   0.0   1.2e-09     7e-08     159     198 ..     147     186 ..     120     209 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0014
    TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklit 369
                  ++k+++d +s +  +g ++ v+Gp G+Gk+t++  + 
  MMETSP1174-20130828|11708_1  21 ENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALG 57 
                  4677888888888888888888888888888877665 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.2e-09
    TIGR03719 159 veklsGGekrrvalcrlllekPdlllldePtnhldaesva 198
                  v  +sGGe++rv ++  l++kP +ll dePt  ld+e+  
  MMETSP1174-20130828|11708_1 147 VRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETAL 186
                  6789*********************************865 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   5.5e-13   3.3e-11      20     198 ..      28     204 ..      20     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 5.5e-13
    TIGR03411  20 dlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk..dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkag.....lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvv 198
                   +s s ++g++ +++Gp G Gktt+l ++  +  p+   v+ +++  +  ++k ++  +  +g   q    f eltv+e l+ a++        l +  ++++++r+e++l  ++L +  d+  g      +s G+++++ i+  l+ +pk+ll DeP++G+ +e    +  +l+ l+ e  + ++
  MMETSP1174-20130828|11708_1  28 GISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSI--VMSENSriSWGGQKWSSALKRCVGFIEQDDVTFPELTVREALTFAARLR------L-TGSKESREQRVEQLLGEMKLGKCSDTLIGgglvrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCII 204
                  566677899********************99998874..444444124556777888899*********************9998643......3.466788899*************9998765222224799****************************988888888888888877777665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   8.3e-13     5e-11     946    1119 ..      26     209 ..       9     234 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 8.3e-13
    TIGR01257  946 vdrlnitfyenqitaflghngagktttlsiltgllppt.....sgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgr.sweeaqlemeamledtglhhkrne.....eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthh 1119
                   +d +  + +  q+ a++g  g+gktt ls l   l p+        +  gg+       a+++ +g+  q ++ f  ltv e + f a+l+   s+e  +  +e +l +  l +  +        + +sgg ++++ +a  ++   k ++ deptsg+d  +   i  +l  l   +g  ii s h+
  MMETSP1174-20130828|11708_1   26 LDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPSivmseNSRISWGGQKWS---SALKRCVGFIEQDDVTFPELTVREALTFAARLRLTgSKESREQRVEQLLGEMKLGKCSDTligggLVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLqgLTTEAGMCIICSIHQ 209 
                   566666677889*******************999998622211234555666655...567899*************************99651555566788999999888776654222215799***********************************9999999855677899999999986 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.3e-12   7.8e-11      15     220 ..      24     230 ..      13     250 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.3e-12
    TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGty..dGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrp....vsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyis.hk.leevkavsdtisvirdGqhv 220
                  + ld+i+   ++G+++++ G  G+Gk+t++  l   + p      +  i + g++      + + ++ +  i q+ +  +el+v e + +   + l G   +++   +r+++ll e+kl + ++t+     v  + +G+++ v ia  l  + ++l+ dep++ l  +   +++ +++ l +++  c+  s h+   +v    d ++ +  G+ v
  MMETSP1174-20130828|11708_1  24 TILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrLDPSIVMseNSRISWGGQKW-----SSALKRCVGFIEQDDVTFPELTVREALTFAARLRLTG---SKESREQRVEQLLGEMKLGKCSDTLIggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEAGMCIICSiHQpSSQVYNQFDDLCFLDAGRCV 230
                  6799*************************999975256654431145577777654.....56678899*****************************...6677789**************999842333677899*****************************99999***********999999877333245677777888887777766 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0     3e-11   1.8e-09     477     690 ..      13     233 ..       3     242 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3e-11
    TIGR01193 477 ndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqa.....esGeillngkslkdidkhelrqlinylPqePfif.sGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvahr..lsvakksdkiivldeGkiieqG 690
                   +v+   G ++ +l+ is + ++ ++++++G +G Gk+t+   l +  ++     e+ +i+ +g++      ++l++ + ++ q+ + f + ++ e l + a+ +++  +  +  ++ ++  ++ kl +  +t +       +sgG ++r+++a  l+s+ k l+ de ts ld  t   i+  l  l+      ii   h+   +v ++ d +  ld G+ +  G
  MMETSP1174-20130828|11708_1  13 AHVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDPsivmsENSRISWGGQKW----SSALKRCVGFIEQDDVTFpELTVREALTFAARLRLTGSKESREQRVEQLLGEM-KLGKCSDTLIGGGlVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVIIGVLQGLTTEagmCIICSIHQpsSQVYNQFDDLCFLDAGRCVYFG 233
                  688889999********************************99999887611111344455555444....579***************446999***********999988887776666554.355556777764414679********************************999999998888875412246666776224578888888888888877665 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.2e-09   1.9e-07     652     800 ..      24     189 ..      10     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.2e-09
    TIGR00957 652 ptlngltlsipegalvavvgqvgcgkssllsallaemd.........kve..g...kvalkgsvayvpqqaw.iqndslrenilfgkaleekyykavle..acalladleilpsgdrteigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                    l+g++ s   g ++av+g+ gcgk+++lsal   +d         ++   g     alk  v ++ q+     + ++re + f  +l+    k+  e     ll ++++  + d t ig   v  +sgg+++rv +a  + s+    l d+p s +d+  a  i+
  MMETSP1174-20130828|11708_1  24 TILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRLDpsivmsensRISwgGqkwSSALKRCVGFIEQDDVtFPELTVREALTFAARLRLTGSKESREqrVEQLLGEMKLGKCSD-TLIGGGLVrGVSGGERKRVCIATELISKPKFLLCDEPTSGLDSETALVII 189
                  5689999999**********************9666552221111114423232223689999****9976516789**********99877776665511457999999877776.66766555269********************************9887665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.1e-09     3e-07      42     196 ..      28     181 ..      12     189 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 5.1e-09
    TIGR03415  42 dasldveeGeilvlmGlsGsGkssllrav.nglnpvsrGkvlvkdedkevdvak.cdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGva.kaerrkrveeqlelvglaeWadkk.....vgelsGGmqqrvGlarafateadillmdePfsald 196
                  ++s + + G+++ +mG +G Gk+++l a+ n+l+p       v  e+  +       +++l    ++ v  + q    +P +tv+e ++f   l+  + k+ r +rve+ l  + l + +d+      v  +sGG ++rv +a  +  + + ll deP s ld
  MMETSP1174-20130828|11708_1  28 GISGSAHTGQVMAVMGPTGCGKTTFLSALgNRLDPS-----IVMSENSRISWGGqKWSSAL----KRCVGFIEQDDVTFPELTVREALTFAARLRLTGsKESREQRVEQLLGEMKLGKCSDTLiggglVRGVSGGERKRVCIATELISKPKFLLCDEPTSGLD 181
                  56778899*******************987999983.....35555666555430233333....45799********************977766550556778999999999*****9996222225679******************************9 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.8e-09   4.7e-07     457     615 ..      14     181 ..      10     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 7.8e-09
    TIGR00954 457 niplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge.lWPvyg...........glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvs 615
                  +++l t e++ +++ +s   + G+ + ++GP GcGK  +   lg+ l P +             + +   +  + ++ q        t+R+ + +  +     +++ +++ +eq+L e+kL +  +  +g   v+     +sgGe++R+ +A  +  kPkf + DE ts + 
  MMETSP1174-20130828|11708_1  14 HVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNrLDPSIVmsensriswggQKWSSALKRCVGFIEQDDVTFPElTVREALTFAARLRLTGSKESREQRVEQLLGEMKLGKCSDTLIGGGLVRG----VSGGERKRVCIATELISKPKFLLCDEPTSGLD 181
                  6778888999999999999************************9758896666799*****84344555677789****98765556*****************************************99999986....8***************************9865 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       9.2   5.6e+02     623     650 ..      26      53 ..      19      59 .. 0.78
   2 !   16.5   0.0   6.8e-06   0.00041     817     885 ..     129     204 ..      95     210 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 9.2
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLi 650
                  l  i+ s   g+++++ G+ g Gk t++
  MMETSP1174-20130828|11708_1  26 LDGISGSAHTGQVMAVMGPTGCGKTTFL 53 
                  5566667778999999999999999987 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 6.8e-06
    TIGR00630 817 LgYiklGqpattL.........sGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdk.Gntvv 885
                  Lg +klG+ + tL         sGGe +rv +a+eL  + +   + + DePt GL  +    ++ vlq l+ + G  ++
  MMETSP1174-20130828|11708_1 129 LGEMKLGKCSDTLiggglvrgvSGGERKRVCIATELISKPK---FLLCDEPTSGLDSETALVIIGVLQGLTTEaGMCII 204
                  555555555555433333333399************98754...7899*********************9865155554 PP

>> TIGR01247  drrB: daunorubicin resistance ABC transporter membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   3.0       8.5   5.1e+02     118     171 ..     316     370 ..     297     423 .. 0.62
   2 !   18.3   8.6   5.3e-06   0.00032      61     198 ..     364     504 ..     357     522 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 8.5
    TIGR01247 118 vaelkvsgvipalvlallvavalsglGlaia.lrmssmeGfqlivallvlpllll 171
                  v++l+   ++  + +++++++ + glG   + ++ +    f+l++  l lp++ +
  MMETSP1174-20130828|11708_1 316 VSKLNTPFYMQQIAIGVIMGILFIGLGDDESdIFSRVSFSFNLLMGALYLPIMEV 370
                  5556666677777788888888888886543145555567888888888887643 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 5.3e-06
    TIGR01247  61 ntsflsGisviwdrqfGflkeilvapasrkeaivGrilGgsivaliqgaillalsfivaelk...vsgvipalvlallvavalsglGlaialrmssmeGfqlivallvl.pllllsGalypiatlpawlqvlakinpltyav 198
                     +++ + v ++    + k++l      ++  + +il  + v  i  +++   +++++  k   v+ +++ +   ++v+  +++lG++ia +++    + + v+++ l  l+ +sG + pi ++   l+++++inp +y  
  MMETSP1174-20130828|11708_1 364 YLPIMEVLFVFLEDSLTLRKDLLAKAHHPVSYYIAKILSVTPVLAILLVLITMSTYTLGFYKygsVQQFLAVMAAQFVVGNVFASLGICIASFVKNPA-YLMSVTMICLvWLFAFSGFFVPIGSIMPGLRWMVHINPASYGF 504
                  556777777788888888888888888889999999999988877777777777888887542227888999999******************99865.5566666655167779*******999889**********9975 PP

>> TIGR00025  Mtu_efflux: ABC transporter efflux protein, DrrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   6.6   2.2e-05    0.0013      66     194 ..     377     505 ..     358     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.2e-05
    TIGR00025  66 ralGvlkRllalPlarlsllagrvlaavarvllatlillvigyvlGfrfrrgaltvlalalvvivlGvalaaavslvatvtlqadvvlelveLviliflllsallvplnliPtwikpvvrvqPvsyave 194
                   +l + k lla   +++s  ++++l +  + ++ ++ +    y lGf   ++    la+++   v+G + a +   +a    ++  ++ +  + ++    +s+  vp  +i   ++++v   P+sy  +
  MMETSP1174-20130828|11708_1 377 DSLTLRKDLLAKAHHPVSYYIAKILSVTPVLAILLVLITMSTYTLGFYKYGSVQQFLAVMAAQFVVGNVFASLGICIASFVKNPAYLMSVTMICLVWLFAFSGFFVPIGSIMPGLRWMVHINPASYGFA 505
                  555666667777788999999999988888888888888889*******99999*******************99********95555444444445567********988888***********9655 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   5.1e-05    0.0031     196     218 ..      34      56 ..      23      62 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.1e-05
    TIGR03499 196 ekggviaLvGptGvGKTTTlAKL 218
                  + g+v+a++GptG GKTT l  L
  MMETSP1174-20130828|11708_1  34 HTGQVMAVMGPTGCGKTTFLSAL 56 
                  5677**************77666 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.02      11      58 ..      13      60 ..       6      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00034
    TIGR00750 11 tlveneepeakellkrilpktGrahvvGltGvPGaGkstlveklieel 58
                 + v   + e k +l+ i+ ++   +v+ + G  G Gk t++++l+++l
  MMETSP1174-20130828|11708_1 13 AHVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRL 60
                 56777778899*********************************9876 PP

>> TIGR01291  nodJ: ABC-2 type transporter, NodJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.3   0.00045     0.027     122     208 ..     413     502 ..     394     521 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00045
    TIGR01291 122 aiavvtatlgyiewvsliyvlpvia...lvalafaslsllvaalarsyeylvfyqslvitpllflsGavvpveqlsdvlqrvihllplar 208
                   i++ t tlg+ ++ s+   l v+a   +v+ +fasl + +a++ +  +yl+    + +  l  +sG  vp+    + l+ ++h+ p   
  MMETSP1174-20130828|11708_1 413 LITMSTYTLGFYKYGSVQQFLAVMAaqfVVGNVFASLGICIASFVKNPAYLMSVTMICLVWLFAFSGFFVPIGSIMPGLRWMVHINPASY 502
                  577889999999999987777666533379********************************************************9765 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00071     0.043     117     150 ..      26      59 ..      22      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00071
    TIGR03167 117 ldeleelaqelklvvlgGnTGsgKtelLeklaea 150
                  ld ++  a++ +++++ G TG+gKt++L++l ++
  MMETSP1174-20130828|11708_1  26 LDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNR 59 
                  5666666777799****************99876 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00056     0.034     108     138 ..      34      64 ..      21      72 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00056
    TIGR00602 108 kkkriLLitGPsGCgKsTvikiLsKelgikv 138
                  +  +++ + GP GCgK+T +  L   l +++
  MMETSP1174-20130828|11708_1  34 HTGQVMAVMGPTGCGKTTFLSALGNRLDPSI 64 
                  4568999*************99998887765 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     0.001     0.061       3      22 ..      39      58 ..      37      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.001
    TIGR02528  3 imliGsvgcGkttLtqaLkg 22
                 ++++G++gcGktt   aL +
  MMETSP1174-20130828|11708_1 39 MAVMGPTGCGKTTFLSALGN 58
                 789************99976 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00081     0.049      20      51 ..      35      66 ..      18      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00081
    TIGR02640 20 sgypvhlrGPaGtGktslalhvakkrdrPvvl 51
                 +g  + ++GP+G+Gkt++  ++ +++d  +v+
  MMETSP1174-20130828|11708_1 35 TGQVMAVMGPTGCGKTTFLSALGNRLDPSIVM 66
                 67778899**************9999855544 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0013     0.076     181     204 ..      39      62 ..       9     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0013
    TIGR03819 181 llvsGgtGsGkttLLsalLalvae 204
                  + v G tG Gktt Lsal  ++++
  MMETSP1174-20130828|11708_1  39 MAVMGPTGCGKTTFLSALGNRLDP 62 
                  6699*************9877765 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0015      0.09     338     385 ..      13      60 ..       4      70 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0015
    TIGR03925 338 erervllGleesdlapvaldfaeephllvlGdsesGktallraiaeev 385
                  ++ +++ G + + l+ +    ++ + + v+G +++Gkt++l a+ +++
  MMETSP1174-20130828|11708_1  13 AHVQLPTGENKTILDGISGSAHTGQVMAVMGPTGCGKTTFLSALGNRL 60 
                  5566777778888888999999999*****************998765 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.9    0.0023      0.14     623     687 ..     363     424 ..     348     472 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0023
    TIGR01647 623 fklpvllvvllallnDgtiltiakDrvkpskkPekWnlkevflvaivlglilvvstllllalald 687
                   +l +++ vl  +l+D+  lt+ kD   ++++P ++ + ++++v+ vl+++lv+ t+ +++l + 
  MMETSP1174-20130828|11708_1 363 LYL-PIMEVLFVFLEDS--LTLRKDLLAKAHHPVSYYIAKILSVTPVLAILLVLITMSTYTLGFY 424
                  334.4677888999997..899************************************9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                       112  (0.0273038); expected 4.1 (0.001)
Passed Fwd filter:                        68  (0.0165773); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 1.50u 0.21s 00:00:01.71 Elapsed: 00:00:01.10
# Mc/sec: 703.14
//
Query:       MMETSP1174-20130828|11712_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|11713_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1174-20130828|11714_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-40  137.1   0.0    2.2e-29   99.7   0.1    2.0  2  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    2.8e-18   63.9   1.7    2.9e-18   63.8   0.2    1.6  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    2.5e-15   54.4   1.2    9.2e-14   49.2   0.2    2.1  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
      6e-07   27.4   0.1    7.8e-07   27.0   0.1    1.2  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    0.00053   17.2   1.1     0.0019   15.4   0.7    1.8  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
     0.0047   13.2   0.1     0.0062   12.8   0.0    1.2  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   3.2e-32   2.2e-29      17     168 ..       2     154 ..       1     159 [. 0.91
   2 !   36.2   0.0   4.8e-13   3.3e-10     249     383 ..     158     287 ..     145     297 .. 0.80

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 3.2e-32
    TIGR01408  17 eamkklaksnvlisGmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvgknraeasvkklaelnqyvvvssvskslnke...flkkfqvvvlteislekqleindfcrsqqppiafikadvrGlfgsvfcdfG.eefavldtdGe 168
                  ea k++  s++l++G++GlG+e+ knl+laG+   t+ d  +v   dl+snffl  +d+gk+ra a+++++ eln++v+v s  +s+++     ++ ++ +v+t+  l++q+++n  +r ++  +a+ +adv G+ g  + d+  +e+ v   +Ge
  MMETSP1174-20130828|11714_1   2 EAQKRMQSSKLLLVGLGGLGAEVLKNLILAGIS-ATVVDGVTVTEGDLASNFFLDANDIGKPRATAALSRIRELNSFVTVESHVESVDNLpddLIQSHNLIVVTQATLDQQKRLNTIARANK--MAYYAADVFGFEGICLVDLCrHEYHVESGTGE 154
                  789*****************************5.6999999999************************************99888876544548899************************9..***********999999986357888777777 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 4.8e-13
    TIGR01408 249 vkvPkkvsfkslrealkdPeflfsdfsklerPp.elhlafqaldafkekaerlPragseedaeellklatkiaetleekveevdeklvkelsytakgvlsplaallGGvvaqevlkavtgkfsPlkqylyldsves 383
                  v  P ++ + sl + l+     ++ + +   P   + + +  l +f++ ++r P+a   +d+ +l ++ +ki + +    +  +++  + l+ +   +lsp++a+lGGv++qev+k ++gk  P+   + l++++s
  MMETSP1174-20130828|11714_1 158 VDGPFQIEYPSLDDMLQTR---WTALRNRWGPVsMVFVRYCILTQFRHTHGRTPTA---QDSSQLEEIGHKILTEQAADGVTFNKEDAECLAGQQGVDLSPVCAILGGVIGQEVVKFISGKGAPIENIFVLNAMDS 287
                  5556666666666666544...222233333431356778899***********86...79************9988888999*********99999***********************************9997 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.2   4.3e-21   2.9e-18      14     151 ..       2     137 ..       1     148 [. 0.95
   2 ?   -1.8   0.0      0.53   3.6e+02     180     202 ..     245     268 ..     233     274 .. 0.64

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 4.3e-21
    TIGR02356  14 egqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqv 151
                  e q+++++sk+l++G+GgLg++v++ l+ aG+   ++vD  +v    l +    +++d+++p++ aa +r++elns ++ve+  e+v++    +li++ +l++ ++  ++ +  +n ++ a+++ +  a v gfeG  
  MMETSP1174-20130828|11714_1   2 EAQKRMQSSKLLLVGLGGLGAEVLKNLILAGISA-TVVDGVTVTEGDLASNFFLDANDIGKPRATAALSRIRELNSFVTVESHVESVDNLP-DDLIQSHNLIVVTQATLDQQKRLNTIARANKMAYYAADVFGFEGIC 137
                  78******************************75.89**************************************************9865.899*****************************************75 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.53
    TIGR02356 180 eaGv.igpvvgvigslqaleAlkl 202
                  ++Gv ++pv +++g +  +e +k+
  MMETSP1174-20130828|11714_1 245 QQGVdLSPVCAILGGVIGQEVVKF 268
                  445556777777776666666655 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.2   1.3e-16   9.2e-14      17     154 ..       2     137 ..       1     148 [. 0.93
   2 !    4.1   0.0    0.0082       5.6     183     225 ..     246     288 ..     232     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 1.3e-16
    TIGR02355  17 dGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaaliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqv 154
                  + q+++++sk+l+vGlGGlG    + l  aG+   t+vd  tv   +l  + +    +ig+p+  +a ++++eln ++ +e+  + +d+   ++li++h+++v +   ++ +++ln+   a+k+   ++    +eG  
  MMETSP1174-20130828|11714_1   2 EAQKRMQSSKLLLVGLGGLGAEVLKNLILAGISA-TVVDGVTVTEGDLASNFFLDANDIGKPRATAALSRIRELNSFVTVESHVESVDNL-PDDLIQSHNLIVVTQATLDQQKRLNTIARANKMAYYAADVFGFEGIC 137
                  6799****************************75.89***************99999*************************99998865.699******************************99999999999965 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0082
    TIGR02355 183 aGv.lapvvGvvGslqaleaikvllkiGkelaGkllildalsle 225
                   Gv l+pv  ++G +   e +k + + G ++  ++++l+a+  e
  MMETSP1174-20130828|11714_1 246 QGVdLSPVCAILGGVIGQEVVKFISGKGAPIE-NIFVLNAMDSE 288
                  455589**********************9976.68888888765 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   1.1e-09   7.8e-07      17     109 ..       5      96 ..       1     136 [. 0.80

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.1e-09
    TIGR02354  17 eklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqy.kvsdvGkkktealkeqiseinPyveieiidekideenleklfk 109
                  ++++ +++ ++GlGGlG++v  nl  aGi    +vd   v   +l  + +  ++d+Gk+++ a   +i+e+n +v +e   e +d+   ++l++
  MMETSP1174-20130828|11714_1   5 KRMQSSKLLLVGLGGLGAEVLKNLILAGISA-TVVDGVTVTEGDLASNFFlDANDIGKPRATAALSRIRELNSFVTVESHVESVDNLP-DDLIQ 96 
                  5678889999*******************87.5788888888889877663699************************9999997533.34444 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   2.8e-06    0.0019      12     123 ..      10     114 ..       3     135 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.8e-06
    TIGR03736  12 vkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqafap.advGankaivlvqRvnqllg.ldWeakperlev..eealssadlvigavDnrkaRkai 123
                   k++lvG GG G+++l++L+            aG++ tv+D  tv e +++   f    d+G+ +a++ + R+ +l   +  e++ e ++   ++  +s++l++ +  + +  k +
  MMETSP1174-20130828|11714_1  10 SKLLLVGLGGLGAEVLKNLIL-----------AGISATVVDGVTVTEGDLASNFFLDaNDIGKPRATAALSRIRELNSfVTVESHVESVDNlpDDLIQSHNLIVVTQATLDQQKRL 114
                  57899**********999973...........5999*****************9986269************99887547788999988875333344445555444444444433 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     9e-06    0.0062     334     419 ..       6      87 ..       3     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9e-06
    TIGR01381 334 vlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaieasgvrlev 419
                  +++s+k ll+G G lG++v + l+  G+   t vd  +v+  +        f d+ + g+++a +a   ++++   ++ ++++ +v
  MMETSP1174-20130828|11714_1   6 RMQSSKLLLVGLGGLGAEVLKNLILAGIS-ATVVDGVTVTEGDLAS---NFFLDANDIGKPRATAALSRIRELNSFVTVESHVESV 87 
                  6899************************6.699**99998776432...337899999**********999998888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 969.97
//
Query:       MMETSP1174-20130828|11715_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    3.5  14.6        8.4    3.2  10.1    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  10.1    0.0021       8.4       8      84 ..      56     129 ..      51     137 .] 0.58

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0021
    TIGR01554   8 laelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaae 84 
                  ++ +ak++kk +ed  ++++ee+k+ +d   a++ kl+a +++  + +++ ++k+++s +a+k+ +++++++++aa+
  MMETSP1174-20130828|11715_1  56 IKGMAKQVKKNEEDHFAKDVEERKARED---AKKLKLKASLDAKLDDDNDTAEKGENSDRAAKKSRKKKKKAAAAAA 129
                  5678899999999988888888887655...4444555555555555444444444444444444444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1174-20130828|11716_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|11721_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 795.41
//
Query:       MMETSP1174-20130828|11717_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-25   85.9  22.2    9.2e-25   85.6  15.4    1.0  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6  15.4   2.2e-28   9.2e-25       5     297 ..       8     296 ..       4     304 .. 0.89

  Alignments for each domain:
  == domain 1    score: 85.6 bits;  conditional E-value: 2.2e-28
    TIGR00817   5 llfllwyvlnvyFnivnkkllklfhypv..lktlvslavgvllellswssilkkrlkiskallkl.llpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                  +l+++w+v+ +   ++nk +l ++ y +   +t+++ a   l++ +    +    +k+  +++k+ +lp+ai+ +     sn ++s   v f+ ++ka +p fs+++  +   ++f++ + l ++ i  Gv+ as  e+ f + gf+ ami +++  ar ++  ++l+     ++++ a+   +   + +p af+v  ++++  e+    ++v +  +    +   l ++ + +   f +l++ s++ty ++  +K  + I v+i +f++++s++q +G ++a++Gvf Y++v+++
  MMETSP1174-20130828|11717_1   8 VLIMIWMVISITLIMYNKWMLSYKGYSFplAMTMTHQAFTALVAHVLCGLRFMSPPKLTISQIKTrILPIAILFAASIALSNLAVSYLTVPFMQMLKASIPTFSLLIGFLTGMETFNSRILLCVMGIGTGVMIASAGEVEFLMKGFIIAMIGLVTEAARLVMTQRLLQG---QDIKFNAI---TGNYYTAPLAFLVLAVPFCIFELDRYRAEVDLSSMAIYIISNGL-VAAALNVAVFVVLKETSAVTYGIAGQVKDWMNILVAIPVFGNQVSMVQLFGYMIAVVGVFYYKRVRTE 296
                  56789***************99998755225666676666666666668999999999888887659****************************************************************************************************94...45666664...5699**************************99999855555555.778899999**************************9****************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1202.99
//
Query:       MMETSP1174-20130828|11724_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1174-20130828|11719_1  [L=831]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.098    8.1  27.6      0.027    9.9  15.0    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  15.0   6.7e-06     0.027     263     501 ..     346     589 ..     311     603 .. 0.69
   2 ?    1.2   0.2    0.0028        12     851     910 ..     717     776 ..     679     804 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.7e-06
    TIGR02169 263 elekeleeiekkleelnkki....eklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelre..elkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeel.eelaeeikkaeqkleqlkedlekaekelrklkeelek.lekelselerelaeleaqak 501
                   l+     +  +l+++++++     ++ e e++a+k+ l+e +++ ++     ++  ++++++++ l+ + +e  +++++ e+++r++++e  e ++l    +e++ ++ e ++ l +v +e +e+ e  el ++++++++  +e+ el+   ++ +e+   l  +++    e+e i  +  e e+ l ++l + i+k++++l  ++ +l + ++++++ ++ l++ + +el + +rel+e   ++ 
  MMETSP1174-20130828|11719_1 346 TLKYAARVKTIRLQAVKNEVgdtnTAKLESEIAALKKMLAEQQSQSQQETVDNENFLDQVNELQAALKDTWEEKARMSSDYENVQRAMRNEYEETRQLLRVERERRWQRIEQKEGLSAVLEELEEVWEdtELVDAQQEISQRLQEIMELE---RKEQEQTMALGLRRRGFLDEMEYIYGDEDEDEDGLsKTLVNLISKQTKQLFDVATELLHTNRSIFDSHSSLHAcVLHELAKWRRELDEYLVEQT 589
                  444444444445555555551111345577888888888888888888888888888888888888888888888888888888888888888877777766676666666666666666666655431266778888888888888887...5666777777777777778888887777776665415567778888888888888888888888888887765367888888888887766654 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.0028
    TIGR02169 851 keiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeele 910
                  ++++++i + +  l+e ++ le  +  v++L+++lk L++ +    + l+++++++++l+
  MMETSP1174-20130828|11719_1 717 SAVAAAISAEEETLKENQRFLELSHDIVETLQSQLKSLHNAMTYSLSVLKNAQSEQKDLA 776
                  333344444444444444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       444  (0.10824); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.17s 00:00:00.76 Elapsed: 00:00:00.77
# Mc/sec: 1424.45
//
Query:       MMETSP1174-20130828|11727_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 787.93
//
Query:       MMETSP1174-20130828|11730_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1354.62
//
Query:       MMETSP1174-20130828|11734_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|11738_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 349.13
//
Query:       MMETSP1174-20130828|11737_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   23.3   3.4      9e-06   22.8   2.4    1.1  1  TIGR00976 /NonD: hydrolase CocE/NonD family protein
    9.2e-05   19.9   0.0    0.00017   19.0   0.0    1.4  1  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
     0.0016   15.8   0.1     0.0026   15.1   0.1    1.4  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR00976  /NonD: hydrolase CocE/NonD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   2.4   6.6e-09     9e-06       7     134 ..     259     399 ..     253     424 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6.6e-09
    TIGR00976   7 vrLaiDvylpaegg....avPvils..rtpYgksallrltldktepaefv.aqGYavVvqDvRGrgaSeGel......dllssdeaeDgydlvdWiakqpwsdG.kVamlGvSYdavtqlllaaskppaLraiaPleslsdl 134
                  v L+  vy p+e+     ++P ++    +p  +     ++l +  + +f   qG+av  +D RG+ +    +      d+  s e+ D ++ v W+      d  +Va  G SY ++ +l+ +a++p+  +a +   +++d 
  MMETSP1174-20130828|11737_1 259 VTLQGAVYAPDEDVwgagPWPLVVAvyGGPHVQYVANSWALTADMRSQFLrSQGFAVLKVDNRGSNRRGHVFevpiqgDMG-SVEVDDQAAGVRWAIARNIADPnRVAVSGWSYGGYMALMCLAKEPGLFQAAVSGAPVTDW 399
                  6788899****998888899977641157888888889988877777766269***********97754444111111444.889*****************9626*********************999999988888774 PP

>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-07   0.00017     135     224 ..     359     447 ..     350     471 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.3e-07
    TIGR02821 135 ldaerqgitGhsmGGhGalvialknPdlfksvsafaPivaPsrspwgrkafskylGadeaawksydasllvkelg.leseilidqGladkf 224
                   d +r +++G s GG+ al++  k+P lf++  + aP+++  +  +     ++y+G  +++ + y  s ++   + +e ++l+  Gl d+ 
  MMETSP1174-20130828|11737_1 359 ADPNRVAVSGWSYGGYMALMCLAKEPGLFQAAVSGAPVTDWKN--YDTCYTERYMGLPQDNPQGYAKSSVMPYVKdIEGSLLLCHGLQDEN 447
                  58899**************************999****98765..5566789*************99999887665999999999999974 PP

>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.9e-06    0.0026      90     127 ..     357     394 ..     264     419 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.9e-06
    TIGR01840  90 ysIDpnrvyvtGLSaGggetaVllatypdvfAgaAsna 127
                     Dpnrv v+G S Gg++    la  p  f +a s a
  MMETSP1174-20130828|11737_1 357 NIADPNRVAVSGWSYGGYMALMCLAKEPGLFQAAVSGA 394
                  456****************************8766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.11s 00:00:00.45 Elapsed: 00:00:00.75
# Mc/sec: 886.97
//
Query:       MMETSP1174-20130828|11739_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 559.01
//
Query:       MMETSP1174-20130828|11740_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 200.34
//
Query:       MMETSP1174-20130828|11736_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 797.32
//
Query:       MMETSP1174-20130828|11741_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|11742_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|11746_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.47
# Mc/sec: 193.77
//
Query:       MMETSP1174-20130828|11750_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 656.65
//
Query:       MMETSP1174-20130828|11752_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 506.67
//
Query:       MMETSP1174-20130828|11753_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-19   67.0   0.1    2.6e-19   66.9   0.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    1.2e-07   28.2   0.0    1.2e-07   28.2   0.0    1.0  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    1.1e-05   21.7   0.0    1.1e-05   21.7   0.0    1.0  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.9e-22   2.6e-19     116     180 ..       8      72 ..       2      73 .] 0.94

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.9e-22
    TIGR03346 116 eakkllkeagvtkekleeaieevrggekvtdanaeekyealekyardlteraregkldPviGrde 180
                   +k++++e+g+t ++l++a+ e+rg++kvt++n+e+ yeal kya +lt+ a egkldPviGrd+
  MMETSP1174-20130828|11753_1   8 YSKDVFSEVGTTYDQLKQAVLEIRGKKKVTSRNPEAAYEALTKYAFNLTASAVEGKLDPVIGRDD 72 
                  45899***********************************************************8 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0     9e-11   1.2e-07     147     194 ..      25      72 ..       2      73 .] 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 9e-11
    TIGR03345 147 eaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRde 194
                  +a  + + ++++++ + +a+ +aL ky+ +lta+A egk+Dpv+gRd+
  MMETSP1174-20130828|11753_1  25 QAVLEIRGKKKVTSRNPEAAYEALTKYAFNLTASAVEGKLDPVIGRDD 72 
                  33344455566777799999**************************97 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.1e-09   1.1e-05     153     192 ..      31      72 ..       2      73 .] 0.65

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.1e-09
    TIGR02639 153 ekee..eekeekkekealekytvdltekakkgkidPliGred 192
                  + ++  ++++ ++  eal+ky+ +lt+ a +gk+dP+iGr+d
  MMETSP1174-20130828|11753_1  31 RGKKkvTSRNPEAAYEALTKYAFNLTASAVEGKLDPVIGRDD 72 
                  2222122333488899************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 283.39
//
Query:       MMETSP1174-20130828|11754_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.7   0.2      0.062   10.5   0.1    1.5  2  TIGR03573 WbuX: N-acetyl sugar amidotransferase


Domain annotation for each model (and alignments):
>> TIGR03573  WbuX: N-acetyl sugar amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.5e-05     0.062     254     311 ..      99     159 ..      87     169 .. 0.80
   2 ?   -1.9   0.0     0.091   3.7e+02     263     303 ..     181     222 ..     161     227 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.5e-05
    TIGR03573 254 Gfeegeed..gtyek.yksidsiltkvhdylkylKfGfgrakdeassdIrsgqitreeaie 311
                  G+ e++++    y + y    +++ +++ y+k  K G+ +++ ++++   +g+i+++ea++
  MMETSP1174-20130828|11754_1  99 GLAEAQHNvgNLYMDgYGVAKDKVRAFEWYMKAAKQGYPQSQLNLANIYFRGDIKKDEALA 159
                  66766666653444314555677788*********************************85 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.091
    TIGR03573 263 tyekyksidsiltk.vhdylkylKfGfgrakdeassdIrsgq 303
                   y+  k +   + + v+ y+k    G++ a++++ ++  +gq
  MMETSP1174-20130828|11754_1 181 MYRLGKGVSRSYSHaVEWYIKAADQGVAEAQYNLGNMFKNGQ 222
                  455555555555555999999999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.83
# Mc/sec: 372.11
//
Query:       MMETSP1174-20130828|11758_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|11760_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 178.92
//
Query:       MMETSP1174-20130828|11761_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-128  426.4   0.0   2.4e-128  426.3   0.0    1.0  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    6.7e-88  293.3   0.1    7.9e-88  293.1   0.0    1.1  1  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    5.3e-54  181.8   0.0    1.9e-53  180.0   0.0    1.8  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    1.2e-49  167.1   0.0    1.4e-49  166.9   0.0    1.0  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    1.4e-34  117.3   0.0    1.6e-33  113.9   0.0    2.3  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
    6.7e-28   95.8   0.0    4.5e-27   93.1   0.0    1.9  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    2.3e-24   84.0   0.0    2.2e-23   80.8   0.0    2.3  1  TIGR02006 IscS: cysteine desulfurase IscS
    1.6e-22   77.7   0.0    1.4e-21   74.5   0.0    2.2  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    2.6e-12   44.6   0.0      3e-12   44.4   0.0    1.2  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    2.3e-10   38.0   0.0    3.4e-10   37.4   0.0    1.2  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
    1.3e-08   32.1   0.0      2e-08   31.5   0.0    1.2  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
    3.6e-06   23.6   0.1    5.3e-06   23.1   0.0    1.2  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    3.5e-05   20.7   0.1    4.7e-05   20.3   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    0.00095   16.0   0.0     0.0013   15.5   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
  ------ inclusion threshold ------
      0.013   12.1   0.0      0.018   11.6   0.0    1.2  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
      0.015   12.0   0.0      0.026   11.2   0.0    1.3  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
      0.039   10.6   0.1       0.12    8.9   0.0    1.7  2  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.3   0.0  9.9e-131  2.4e-128      83     402 ..       1     325 [.       1     326 [. 0.98

  Alignments for each domain:
  == domain 1    score: 426.3 bits;  conditional E-value: 9.9e-131
    TIGR01979  83 ivftkgateslNlvaaslgesslkegdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGemieevsleestyaelPlkfEaGtpniagvvglgaaieylekiglekieakekeltayalerleeidglriygpkeee.....eragiisfnvegvhahDvatlldeeGiavRsGhhCaqPlmkrldveataRaslalYnteedvdalvealkkvrklf 402
                  i+ft+ga+e+ Nlva+++g ++l  gde++++ +eHH+nivpwq++a+++gaklk++ ld d++ld++e+ e+l+ ktklv+++h sNvlG++np+eei+  ah vg+lv +D++q+vph++vdv++ld+Dfl+ sgHK++gptGiG+Lygk +lL ++pP++gGGemi+ev l++stya++P +fEaGtp+ia++vglgaa e+l+ +g+++++a+ek+l + +++ l+ idgl+ +gp+  e     +r+++++f+ + vh++D++++ld+eG a+RsGhhCaqPl++ l+ +++ Rasl+lYnte++++alv+ lk++ ++f
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWGVANLGPGDEVILTVMEHHSNIVPWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYDLLAAMPPWQGGGEMIDEVFLTHSTYAPPPGRFEAGTPAIAQAVGLGAACEFLMGVGMDRVAAHEKHLSQKLWDGLTGIDGLTPLGPAPIEsdavtARTALVAFHHDAVHSSDLTFFLDQEGFALRSGHHCAQPLHRELGYTHSSRASLYLYNTEAEIEALVAQLKSTLEMF 325
                  8**********************************************************************************************************************************************************************************************************************************************975432223389*********************************************************************99988 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.1   0.0   3.3e-90   7.9e-88      81     398 .]       1     327 [.       1     327 [. 0.96

  Alignments for each domain:
  == domain 1    score: 293.1 bits;  conditional E-value: 3.3e-90
    TIGR03392  81 ivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleamppwqGGGkmlsevsfdgfipqavpfrfeaGtpniaGviGlsaalewlkdldlekaeaysvsladlaeeklaklpGfrsf.........riaessllafdfadvhhsdlvallaesgialraGqhcaqpllaalGvsGtlrasfapyntkqdvdalveavkkalellkd 398
                  i++trG++e++nlvaq++   +l p+de+i++  ehh+n++pw mvae+tGak+  + l+ d+  d++ + e l++kt+l++++  snv G +  +++i+  ah  g +v +d  q v h+p+dv++ld df a sghk+ gptGiG lyGk +ll+amppwqGGG m+ ev +   +  + p rfeaGtp ia  +Gl aa e+l  + +++  a+ ++l++   + l+ + G+             +a ++l+af+ + vh sdl   l ++g alr+G+hcaqpl  +lG + + ras+  ynt+++++alv+ +k++le++ d
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWGVANLGPGDEVILTVMEHHSNIVPWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYDLLAAMPPWQGGGEMIDEVFLTHSTYAPPPGRFEAGTPAIAQAVGLGAACEFLMGVGMDRVAAHEKHLSQKLWDGLTGIDGLTPLgpapiesdaVTARTALVAFHHDAVHSSDLTFFLDQEGFALRSGHHCAQPLHRELGYTHSSRASLYLYNTEAEIEALVAQLKSTLEMFAD 327
                  89****************************************************99*************************************************************************************************************************************************************************9999999998754221111111356789**********************************************************************9976 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.0   0.0   8.1e-56   1.9e-53      88     401 .]       7     318 ..       1     318 [. 0.89

  Alignments for each domain:
  == domain 1    score: 180.0 bits;  conditional E-value: 8.1e-56
    TIGR01976  88 atslafllsrala.rtlgpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkpsk...........lefsedegperlElGtlqyellaGvvaavdylaelgaseegsrRerlvasfeaieayeerlaerllagLsdlplvtvyglq...dekleervptvaftvaklapervvkrlaeqnvlvaaghfyavellrqLgleaeeGvvrvglahYntaeevdklleal 401
                  a++   l++++ +  +lgpgdEvi+t ++h++Ni pW+  ae++gak+k++ +d  d +l+ +++   ls++T+LV v   sn+lG+++ ++ ++ ++ha+G+lv++Da +  ph  +Dv++l++D+l+ s++k+ gP  +G+l+++ +ll  ++p +           ++ +++ +p r+E+Gt+ + +  G+ aa ++l ++g              ++ ++a+e++l+++l +gL+++ ++t  g++    +++ +r+  vaf+ + ++++++   l +++  +++gh  a  l r+Lg ++     r++l  Ynt++e++ l++ l
  MMETSP1174-20130828|11761_1   7 ASEAFNLVAQTWGvANLGPGDEVILTVMEHHSNIVPWQMVAEKTGAKLKFVGLDG-DQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTgIGFLYGKYDLLAAMPPWQgggemidevflTHSTYAPPPGRFEAGTPAIAQAVGLGAACEFLMGVG--------------MDRVAAHEKHLSQKLWDGLTGIDGLTPLGPApieSDAVTARTALVAFHHDAVHSSDLTFFLDQEGFALRSGHHCAQPLHRELGYTH---SSRASLYLYNTEAEIEALVAQL 318
                  55555667777763479*************************************9.99********************************************************************************66***********99987543332222222245567889************************9999..............78899***********************986321344899*******************************************994...56***************99875 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   0.0   5.9e-52   1.4e-49      65     374 ..       1     319 [.       1     321 [. 0.91

  Alignments for each domain:
  == domain 1    score: 166.9 bits;  conditional E-value: 5.9e-52
    TIGR01977  65 vvFtnnattalNialk..Gilk..egkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekik..lkpllsGGtGsnSasleqpsel..PdrfeaGtlNtlgiagLkagikfiekigianikkkelkltekllegLkeikkvkiyGak.....daakrvgvvSltlegldseevaaildekfdivvRaGlHCaPlaHktigtlatGtiRlslgyfnteeeieklvealk 374
                  ++Ft+ a +a+N++ +  G+ +   g++vi t +EH++ + p ++++e++g ++++v  + + ++d+++  + ++ +tkl+ ++h SNv G++ pieei   a++ g+l+ +Da qt+  +++dv  l+ d+la +GHK + gp+Gig l+ k ++   + p + GG   +   l++ +    P rfeaGt  +   +gL a+ +f+  +g+ +++++e +l +kl +gL  i+ ++ +G++      ++ r+++v+++++ ++s++++  ld++   + R+G HCa   H+ +g +++   R sl  +nte+eie lv  lk
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQtwGVANlgPGDEVILTVMEHHSNIVPWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHK-MCGPTGIGFLYGKYDLLaaMPPWQGGGEMIDEVFLTHSTYAppPGRFEAGTPAIAQAVGLGAACEFLMGVGMDRVAAHEKHLSQKLWDGLTGIDGLTPLGPApiesdAVTARTALVAFHHDAVHSSDLTFFLDQEG-FALRSGHHCAQPLHRELGYTHS--SRASLYLYNTEAEIEALVAQLK 319
                  79**********9987446554559******************************************************************************************************************.79*********9977654577777788888877778777663368*******************************************************97222213457899********************99.9*********999*****8775..69***************98876 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   6.4e-36   1.6e-33      62     369 ..       1     321 [.       1     327 [. 0.80

  Alignments for each domain:
  == domain 1    score: 113.9 bits;  conditional E-value: 6.4e-36
    TIGR03402  62 iiftsggtesdntaiksalaakkek.khiittavehpavlslceyL.ekegykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakekgvlfhtDavqavGkvpidlkeleidllslsghklhaPkgvgalyirkgv.klepllrGGhq...e....r........grRagtenvpgivglgkaielaa.eeleeenekvkalRdrlekgllekipkarvnGdk....ekRlpntvnisfe..fiegeailllldkegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlpei 369
                  iift g++e+ n   ++   a+    +++i t +eh++ +   +++ ek+g k++ +  d + rld++e+ ++l+ +t lvsv +  n +G+++pieei   a+  g l   Da q+v ++p+d+++l+ d+l+ sghk+ +P g+g ly +  +    p  +GG++   e    +        +  agt  +++ vglg a+e+ +   +++ +++ k+l ++l +gl   i+  +  G      +   + t+ ++f+   + +  +  +ld+eg a  sG  C+    +p h  r +g +    h s R sl  +nte++++ ++++l++ 
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWGVANLGPgDEVILTVMEHHSNIVPWQMVaEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYDLlAAMPPWQGGGEmidEvfltHstyapppgRFEAGTPAIAQAVGLGAACEFLMgVGMDRVAAHEKHLSQKLWDGLTG-IDGLTPLGPApiesDAVTARTALVAFHhdAVHSSDLTFFLDQEGFALRSGHHCA----QPLH--RELGYT----H-SSRASLYLYNTEAEIEALVAQLKST 321
                  89*********998877666666655999999***998766666651679*****************************************************************************************************9875244566666654122222221222222212369****************7652689*****************987.77777777644443555677777888522799999******************8....5666..333332....3.4488888888888888888888765 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   1.9e-29   4.5e-27      62     279 ..       1     231 [.       1     287 [. 0.80

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 1.9e-29
    TIGR03235  62 viftsgatesnnlall..GlaeygeqkgkkhiitsaiehkavlepikfLeen.GftvtylevdesGridveelkeairedtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiavdlsakridlisvsghkiygPkGiGalvirkrrkkkaplkPllfGGGq...ergL............rpGtLpvalivGlgeaaeiar.knaeakekklralknklldaLkt 279
                  +ift ga e+ nl+    G+a+ g+ +    +i + +eh++ + p ++++e+ G + +++  d + r+d++e +e++ ++t lvs+ ++ n +G+l+pi+ei    ++ + ++  Da q+v ++ vd+++ + d+++ sghk+ gP GiG l+ +      a + P   GGG+   e  L             +Gt ++a+ vGlg a+e       +    + + l +kl d L +
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQtwGVANLGPGD---EVILTVMEHHSNIVPWQMVAEKtGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYD--LLAAM-PPWQGGGEmidEVFLthstyapppgrfEAGTPAIAQAVGLGAACEFLMgVGMDRVAAHEKHLSQKLWDGLTG 231
                  8************86444999999988...599999**********9998877***************************************************************************************************98773..33333.445666642222222111111111111567778888888888888655145666677778888888887765 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   8.9e-26   2.2e-23      67     285 ..       1     235 [.       1     328 [] 0.80

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 8.9e-26
    TIGR02006  67 ivftsGatesdnlaikGvakfykskgkhiitsktehka.vldtcrelereGfevtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGh...e......r......GlrsGtlpthqivGlGeafriak.eelakdtarvlklrdkllngiesieev 285
                  i+ft Ga+e+ nl+ +         g+ +i +++eh + ++      e+ G ++ ++ ++ d  +d++e+ ++++ +t lvsv +  n +G +++i++i   + +   l   da+q+v  +p+d+ +l  d+l+ s+hk+ Gp GiG ly +      + +  +GGG+   e              + +Gt ++ q vGlG a+++     +++  a+ ++l +kl++g+ +i+ +
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWGVANLGPGDEVILTVMEHHSnIVPWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYDLLAAMPP-WQGGGEmidEvflthsTyapppgRFEAGTPAIAQAVGLGAACEFLMgVGMDRVAAHEKHLSQKLWDGLTGIDGL 235
                  8*************9866655667788877777777661555666779******************************************************************************************************88776665555.455554222222221112222213789***************9755168999999**********999998765 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   5.9e-24   1.4e-21      63     230 ..       1     168 [.       1     327 [. 0.70

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 5.9e-24
    TIGR03403  63 ivitscatesnnwvlkgvyfdeilkkeknhiittevehpa.vraacafleslgvevtylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkgvgalyikkgv.eltpllhggehm 230
                  i++t  a+e+ n v ++    ++     +++i t +eh + +     + e+ g ++ ++ ++ +  +++++  e+++ kt lvsv   +n  g ++pi+ei   ++  g l   da q+v ++pvdv++++ dfl+ s hk+ gp g+g ly k  +    p ++gg  m
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWGVANLG--PGDEVILTVMEHHSnIVPWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKMCGPTGIGFLYGKYDLlAAMPPWQGGGEM 168
                  688888999999888876666554..44689999999877155556677999****************************************************************************************************998752444555555444 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.2e-14     3e-12      92     208 ..      46     159 ..      28     283 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.2e-14
    TIGR03301  92 iaeylglphtalkfseeeevdlseieelLaedpdithvavvHhEtttgiLnpleaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdlleas 208
                  +ae  g     +  + +++ d++e  e+L+ ++++  v v H     g Lnp+e+i+  a++ g  +++Da  ++  +p+d+++ld+d+l+as  K + g +G++F+ ++ dll+a 
  MMETSP1174-20130828|11761_1  46 VAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKL--VSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHK-MCGPTGIGFLYGKYDLLAAM 159
                  67777777777888889999999*99***977766..5667****************************************************999.6799***********99875 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.4e-12   3.4e-10     124     211 ..      74     158 ..      42     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.4e-12
    TIGR02326 124 laadpeithvalvhsetttGilnPieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaelek 211
                  l   p+   v++ h     G lnPie+++  a++ G  + +da  ++  +++d+++l++d+l +s  k + G  G+gf+  k + l++
  MMETSP1174-20130828|11761_1  74 L--SPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHK-MCGPTGIGFLYGKYDLLAA 158
                  4..3555668889*************************************************999888.56999*****999888775 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   8.3e-11     2e-08      88     218 ..      24     146 ..       2     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 8.3e-11
    TIGR02539  88 keGdvvvldglahytsyv....aaeraglevkevpetgspeykvkleeykevieevedesgkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksmaasapvGv 218
                   +Gd v+l  + h++  v     ae++g+++k v+ +g    +++++e+ e +         +++l+ ++h     G l+  ++++  ++  g  ++l++  tv  +pv+ ++++ df+ +sGhk    ++p G+
  MMETSP1174-20130828|11761_1  24 GPGDEVILTVMEHHSNIVpwqmVAEKTGAKLKFVGLDGD--QRLDMDEFMETLS---P----KTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVRDLDCDFLAASGHKM---CGPTGI 146
                  4799999999999998764333799*******9998886..5678888776654...3....478999********************************************************94...666665 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.2e-08   5.3e-06      90     185 ..      23     123 ..       8     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.2e-08
    TIGR01325  90 lsaGdhvvasrslfGstvvlvseilkrfGvevsfvdat.....dlkaWeaalkantkllfletPsnPlaelvdiaalaelahavGaklvvdnvfatPvlqq 185
                  l  Gd+v+ +     s +v  + + ++ G + +fv  +     d++++  +l+++tkl+ +   sn l  l  i+ +   ahavG+++ +d + + P +  
  MMETSP1174-20130828|11761_1  23 LGPGDEVILTVMEHHSNIVPWQMVAEKTGAKLKFVGLDgdqrlDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPV 123
                  5678888888888888888888888999999999865443445999***********************************************99997654 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   4.7e-05      73     176 ..       2     108 ..       1     127 [. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.9e-07
    TIGR03947  73 lvthGsseaiylvlt....allrPGdevvvvdpayhs....lselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesga 176
                  + t G+sea  lv +    a l PGdev+++   +hs     + +a  +gak++   l+   d r d+d++ + ++++t+lv v    n  Ga  ++   +e++  a ++g+
  MMETSP1174-20130828|11761_1   2 IFTRGASEAFNLVAQtwgvANLGPGDEVILTVMEHHSnivpWQMVAEKTGAKLKFVGLD--GDQRLDMDEFMETLSPKTKLVSVAHGSNVLGAL-NP--IEEIVLAAHAVGS 108
                  6799********9973333579*******999999984333356788888888887776..899*********************999998863.33..3445545555554 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.4e-06    0.0013      75     180 ..       1     113 [.       1     116 [. 0.84

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.4e-06
    TIGR01141  75 illgnGsdelielliraf....lepgdavlvleptysm....YevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvD 180
                  i++++G+ e+ +l++++     l pgd+v+ + +        ++++a+ +ga++k v l+ d++ d++++ e+ + k+klv +a+ +n  G+l   eei+  +++v   lV +D
  MMETSP1174-20130828|11761_1   1 IIFTRGASEAFNLVAQTWgvanLGPGDEVILTVMEHHSnivpWQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAV-GSLVFLD 113
                  7899**********99753222789977766555443223349*******************99*****************************9999999888888.7888888 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.6e-05     0.018     109     180 ..      45     121 ..       4     142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.6e-05
    TIGR02080 109 alakkgklkvqlv....dqs.deealekalaekpklvlietPsnPllrvvdiaklcklakaagavvvvdntflsPil 180
                    a+k   k+++v    dq+ d++ + ++l+ k+klv +   sn l  +  i+++  +a+a+g++v +d     P +
  MMETSP1174-20130828|11761_1  45 MVAEKTGAKLKFVgldgDQRlDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHM 121
                  56777777777775544554489999******************************************988777755 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011     0.026     117     224 ..      45     155 ..      11     163 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
    TIGR01328 117 daltkfgidvkfvdma.....speevkaaikdntkivyfetpanptlklidleavvrvakekgvkvivdntfatplltrpv.alGvdvvvhsatkyigGhgdvvaGvliGdael 224
                  +  +k g + kfv ++       +e +++++++tk+v +    n    l  +e +v  a++ g +v  d   + p +   v +l +d++  s  k  g  g    G l G+ +l
  MMETSP1174-20130828|11761_1  45 MVAEKTGAKLKFVGLDgdqrlDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDACQTVPHMPVDVrDLDCDFLAASGHKMCGPTG---IGFLYGKYDL 155
                  55666666666665542111135788899**********************************************997766589******99999766443...3556666555 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00051      0.12     120     192 ..      43     115 ..      10     135 .. 0.81
   2 ?   -1.3   0.0      0.65   1.6e+02     155     194 ..     226     264 ..     211     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00051
    TIGR03812 120 fekaaellglelvkaeldeeykvdvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaa 192
                  ++ +ae  g +l  + ld + ++d+++  e+++ +t  +    G+  lG++++iee+   a+  +  +  Da 
  MMETSP1174-20130828|11761_1  43 WQMVAEKTGAKLKFVGLDGDQRLDMDEFMETLSPKTKLVSVAHGSNVLGALNPIEEIVLAAHAVGSLVFLDAC 115
                  455666678899999*******************99877777799************9999988888888875 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.65
    TIGR03812 155 tiglvgiaGttelGlvDdieelskiakendlylhvDaafG 194
                   +gl gi G t lG   +ie+ +  a+   + +h Da   
  MMETSP1174-20130828|11761_1 226 WDGLTGIDGLTPLGP-APIESDAVTARTALVAFHHDAVHS 264
                  47999********98.589999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:01.10
# Mc/sec: 393.57
//
Query:       MMETSP1174-20130828|11763_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   29.2   0.1    1.6e-07   28.7   0.0    1.2  1  TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD
  ------ inclusion threshold ------
      0.036   11.9   0.0      0.053   11.3   0.0    1.3  1  TIGR02571 ComEB: ComE operon protein 2


Domain annotation for each model (and alignments):
>> TIGR00326  eubact_ribD: riboflavin biosynthesis protein RibD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   7.8e-11   1.6e-07       3      70 ..     194     270 ..     191     293 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 7.8e-11
    TIGR00326   3 raldlakkaqftTepNPaVGaVivk.ngeivgegahe.....kaGeaHaEvvAlaqAgeka.....kgatlyVtLEPCs 70 
                  +a+++a  a  +     +VGa++v  +g  v   ah+     +   aHaE+ A+++A +++     +gatly tLEPC+
  MMETSP1174-20130828|11763_1 194 LAMQQADLAAKN--GEVPVGAILVAeDGFTVLSEAHNlvasnNDPTAHAEIIAIREACQRVenwrlNGATLYCTLEPCA 270
                  444444443332..23469****997887776666652221144579************99888889***********7 PP

>> TIGR02571  ComEB: ComE operon protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.6e-05     0.053      66     114 ..     236     286 ..     201     307 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.6e-05
    TIGR02571  66 rtihaemnallq.cakf.gvsteeaeiyvthfpclqctksiiqagikkvyy 114
                   t hae+ a+ + c +    + ++a++y t  pc  c  ++  a ++++ y
  MMETSP1174-20130828|11763_1 236 PTAHAEIIAIREaCQRVeNWRLNGATLYCTLEPCAMCLSAVQSARVRRLVY 286
                  589******98625555245789*****************99999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 998.53
//
Query:       MMETSP1174-20130828|11762_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1396.31
//
Query:       MMETSP1174-20130828|11764_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1531.77
//
Query:       MMETSP1174-20130828|11766_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1308.24
//
Query:       MMETSP1174-20130828|11770_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1013.34
//
Query:       MMETSP1174-20130828|11765_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-47  156.6   2.2      3e-47  156.2   1.5    1.1  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    3.3e-17   60.1   0.5    3.9e-17   59.9   0.4    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    6.2e-05   21.0   0.5    8.6e-05   20.5   0.3    1.2  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   1.5   2.2e-50     3e-47       3      97 .]      50     143 .]      48     143 .] 0.98

  Alignments for each domain:
  == domain 1    score: 156.2 bits;  conditional E-value: 2.2e-50
    TIGR02008   3 ykvklvnedgseetievpddeyildaaeeeGidlpyscraGacstcaGkvkeGtvdqsdqsfldddqleegyvltcvayptsdvkiethkeeell 97 
                  ++v+l n++g + +ie+pdd yild+aee+G+dlpyscraGacs+caGkv++G+vd+s+qsfldddql++gy ltcvay tsd++ieth e++l+
  MMETSP1174-20130828|11765_1  50 FSVTLKNPEG-DVVIECPDDVYILDVAEEAGVDLPYSCRAGACSSCAGKVTSGSVDNSEQSFLDDDQLAAGYTLTCVAYATSDCTIETHAEDDLF 143
                  89*******9.99********************************************************************************95 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.4   2.9e-20   3.9e-17     277     345 ..      63     131 ..      31     136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 2.9e-20
    TIGR02160 277 slsaedesvldaalraradlPfackgGvcgtcrakvleGkvemeknyalepdevdaGyvltcqarPlsd 345
                      +d  +ld+a  a++dlP++c++G c+ c  kv+ G+v+  +   l+ d+++aGy ltc a+  sd
  MMETSP1174-20130828|11765_1  63 IECPDDVYILDVAEEAGVDLPYSCRAGACSSCAGKVTSGSVDNSEQSFLDDDQLAAGYTLTCVAYATSD 131
                  34457788********************************************************98876 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   6.3e-08   8.6e-05      13      83 ..      57     127 ..      48     142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.3e-08
    TIGR02007  13 peG.avveakeGetildvalkaeieiehacekscacttchvivrkGfdsleeasekeedlldkawGleaesr 83 
                  peG +v+e+ +   ildva +a++++  +c  + ac++c   v  G    +e+s  ++d l   + l   + 
  MMETSP1174-20130828|11765_1  57 PEGdVVIECPDDVYILDVAEEAGVDLPYSCR-AGACSSCAGKVTSGSVDNSEQSFLDDDQLAAGYTLTCVAY 127
                  8883468999999*****************6.68*************999*********9998888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 471.86
//
Query:       MMETSP1174-20130828|11768_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|11773_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1912.06
//
Query:       MMETSP1174-20130828|11775_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.54
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|11776_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-12   43.7   0.0    6.2e-12   43.6   0.0    1.0  1  TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein


Domain annotation for each model (and alignments):
>> TIGR02396  diverge_rpsU: rpsU-divergently transcribed protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   1.5e-15   6.2e-12      58     129 ..       8      79 ..       1      82 [. 0.85

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 1.5e-15
    TIGR02396  58 allealkakelledlkvrekielavrlrlkmvkpiiehlkqalallakpknlaeslrlllelvDeIwylagD 129
                  +++++ ++ ++ +d + +ek+++a ++rl+  +p+i+ ++qa+al + p nl++ lr l+ l+D+++y+ag 
  MMETSP1174-20130828|11776_1   8 QVEAQPEIFSNGTDVSSEEKLKAAMQIRLHILEPYISTWSQAMALGLLPVNLPTTLRNLALLSDDLCYAAGY 79 
                  33344444447789999*****************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 322.21
//
Query:       MMETSP1174-20130828|11782_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|11784_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 398.78
//
Query:       MMETSP1174-20130828|11777_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:01.07
# Mc/sec: 685.85
//
Query:       MMETSP1174-20130828|11783_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   32.3   0.1    3.5e-08   31.5   0.1    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.2e-08   32.1   0.0    3.9e-08   31.2   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    4.9e-05   20.9   0.0    6.3e-05   20.5   0.0    1.3  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
    0.00018   19.0   0.1    0.00027   18.4   0.1    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.011   13.4   0.0       0.02   12.5   0.0    1.4  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
      0.021   11.9   1.7      0.027   11.6   0.1    1.8  2  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   5.1e-11   3.5e-08       4      84 ..      63     143 ..      60     161 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5.1e-11
    TIGR01126   4 enfdelvlde.nkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke 84 
                  ++f+++  ++ ++ v+v+f+   C  C+ laP++ ++a+ ++    + k a+++  +++e  ++++v   P ++f+  g ++
  MMETSP1174-20130828|11783_1  63 QQFNQFFEEHsKEIVVVKFFKSRCQACRLLAPKFRQVAEIYDGVG-QFKFAEINFGENREEFEDLNVMFTPSVHFYWGGVES 143
                  67888877651567899*************************987.7**************************998877654 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   5.7e-11   3.9e-08       3      81 ..      62     143 ..      60     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5.7e-11
    TIGR01068   3 eenfeetvas.sdklvlvDfwAeWCgpCkmlaPvleelakele..ekvkvvKlnvdeeqeiaakygirsiPtlllfkngkev 81 
                  +++f++ +++ s++ v+v f+ + C +C++laP + ++a+ +   ++ k++ +n  e++e  ++ +++  P + ++  g e 
  MMETSP1174-20130828|11783_1  62 RQQFNQFFEEhSKEIVVVKFFKSRCQACRLLAPKFRQVAEIYDgvGQFKFAEINFGENREEFEDLNVMFTPSVHFYWGGVES 143
                  678888887614567899*********************87762268999*********************99998887665 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   9.3e-08   6.3e-05      27      78 ..      24     102 ..       9     141 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9.3e-08
    TIGR02738  27 Llae.......................eesltaaqdekpv....grkvlledyklvlfyqstCpyChqfapvLkqlsqq 78 
                  L++e                       e +++++  e+++      +  +++  +v f++s C+ C+  ap+++q ++ 
  MMETSP1174-20130828|11783_1  24 LMDEvrateaalkllelaevkkstpalEPEVKVHPIENRQqfnqFFEEHSKEIVVVKFFKSRCQACRLLAPKFRQVAEI 102
                  555555555556666666666666666445555555555522222233344456899******************9875 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.9e-07   0.00027       8      85 ..      62     140 ..      54     154 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.9e-07
    TIGR01130   8 kenfddliken..elvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrng 85 
                  +++f+++ +e+  e+v+v+F+   C  C+ LaP++ + Ae+    + + k a++   e++e  +  +v   P++ ++  g
  MMETSP1174-20130828|11783_1  62 RQQFNQFFEEHskEIVVVKFFKSRCQACRLLAPKFRQVAEIYDGVG-QFKFAEINFGENREEFEDLNVMFTPSVHFYWGG 140
                  5678888875433899999999999999999999999999888777.899999999988888888888777777777655 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-05      0.02       5      88 ..      61     141 ..      58     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
    TIGR02187   5 dkeilkeeflkelknpvelvvFtdeskekCeyCeetkqlleelsevsdkl.kleiydldteedkekvekykvervPtvileeegs 88 
                  ++++  + f+++ k+ v +++F++    +C+ C  +    ++++e+ d + +++  + +  e++e++e+ +v   P+v ++  g+
  MMETSP1174-20130828|11783_1  61 NRQQFNQFFEEHSKEIVVVKFFKS----RCQACRLLAPKFRQVAEIYDGVgQFKFAEINFGENREEFEDLNVMFTPSVHFYWGGV 141
                  566666666666677777777766....8******99999999999976646788888888*****************9997664 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.24   1.6e+02      69      94 ..       5      30 ..       1      35 [. 0.60
   2 ?   11.6   0.1   3.9e-05     0.027     154     198 ..      59     103 ..      40     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.24
    TIGR02740 69 aaepakeelaefsvawlrenleelrd 94
                  ae+a+e  ae+  a lr+ ++e+r+
  MMETSP1174-20130828|11783_1  5 VAEKAEESVAEVKEAELRKLMDEVRA 30
                 34445555666666677777777764 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3.9e-05
    TIGR02740 154 teaeeqkdevlkelakkaglffffksdCklCeqqapilkaleery 198
                   e+++q ++  +e +k+ ++  ffks C++C   ap  ++++e y
  MMETSP1174-20130828|11783_1  59 IENRQQFNQFFEEHSKEIVVVKFFKSRCQACRLLAPKFRQVAEIY 103
                  567788889999999*****************9999888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1174-20130828|11789_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|11787_1  [L=1027]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       936  (0.228181); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.35u 0.22s 00:00:01.57 Elapsed: 00:00:01.20
# Mc/sec: 1129.61
//
Query:       MMETSP1174-20130828|11788_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   17.2   0.0    0.00046   16.8   0.0    1.1  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-07   0.00046       7      89 ..      49     136 ..      44     142 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.1e-07
    TIGR02031   7 llllavDpelgGvairaraGtaktalaralaeiLpeieelegsk.aplvelplgvtedrLlGgiDvees....lasgkrvlqkgllae 89 
                  l ll vDp+l G+ i   +G+a+  ++  +++i +  ++le+ + ++  +l    +ed L G i +++     l +g + lq+gl++ 
  MMETSP1174-20130828|11788_1  49 LXLLRVDPALLGLDIGIGRGPARGEFLVVIRRIPDDVDDLEPIRvSKCHRLEFFFQEDILWGLIAIKKDhlsiLSHGIHQLQQGLVDG 136
                  899***************************************96256789**************998642223677888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 711.94
//
Query:       MMETSP1174-20130828|11790_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 426.14
//
Query:       MMETSP1174-20130828|11791_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 711.94
//
Query:       MMETSP1174-20130828|11785_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.3   0.0       0.59    6.8   0.0    2.2  2  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
     0.0042   14.6   0.0     0.0074   13.8   0.0    1.3  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.022   12.1   0.0      0.054   10.8   0.0    1.6  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family
      0.025   11.8   0.0       0.04   11.1   0.0    1.3  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00057      0.59     326     384 ..     166     236 ..     157     242 .. 0.79
   2 !    5.8   0.0    0.0011       1.2     283     314 ..     278     311 ..     252     318 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00057
    TIGR02800 326 vspsispdgkliafvkrekg..........kfniavmdldt.gevqlltetgld..esPsfaPngrmilyas 384
                  ++++++p gk+++ v++++g          + +i++++ld+ ge+++l  tg+d  + P++ P g+ ++y++
  MMETSP1174-20130828|11785_1 166 ADGKVDPSGKNLVCVRENHGhtgdalpaevVNEIVSVTLDGsGEMTVLA-TGRDfyQAPRVNPTGQRLAYIT 236
                  6789999999999999999999999999988899999999966666664.4444348999999999999987 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0011
    TIGR02800 283 ePsfspDgksivFtSdrgGspQiYkmd..adgge 314
                  +P ++p   s+++ Sd +G+ ++++     +g+ 
  MMETSP1174-20130828|11785_1 278 QPDWHPATGSLYYISDVSGYHNLFRLApgESGSG 311
                  69****999***************9875555555 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.2e-06    0.0074     182     214 ..     632     664 ..     613     683 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.2e-06
    TIGR01738 182 ralqkisvPvLrlyGqkDalvPakvvealdkla 214
                  + ++ +svP+L+l G  D++vP++ +e++++ +
  MMETSP1174-20130828|11785_1 632 NSVDTLSVPILLLQGDEDKIVPPNQAETMHAAL 664
                  4578899******************99998754 PP

>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.2e-05     0.054      92     194 ..     557     663 ..     537     669 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.2e-05
    TIGR01840  92 IDpnrvyvtGLSaGggetaVllatypdvfAgaAsnaglpygsa....s..ssisalpkmsstaktakelgrlvrgsqselklstpivsvvhgdaDytVlpgnaeeivda 194
                   D+ r  + G SaGg+ t  ++  + dvf ++ s  g +  sa    +   +   l+    +    ke+ +  +  +s  +ls pi+  ++gd+D +V p++ae++  a
  MMETSP1174-20130828|11785_1 557 ADATRLAIDGGSAGGYTT-LAALAFRDVFTAGCSLYGVADCSAlaadThkFESRYLDGLIGAYPAEKEVYDKRAPINSVDTLSVPIL-LLQGDEDKIVPPNQAETMHAA 663
                  5899999*******9977.567789****9988877655433210002002333344444344444566666666666666777765.689999999999888887766 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.04     187     218 ..     632     663 ..     571     675 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.9e-05
    TIGR02427 187 erleeiavPtlviaGdeDgstPpelvreiadl 218
                  + ++ ++vP+l++ GdeD   Pp++++++ ++
  MMETSP1174-20130828|11785_1 632 NSVDTLSVPILLLQGDEDKIVPPNQAETMHAA 663
                  567899******************99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.64
# Mc/sec: 1486.94
//
Query:       MMETSP1174-20130828|11794_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1174-20130828|11795_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   14.8   1.8     0.0047   14.8   1.2    1.7  1  TIGR04067 oc_CLOSPO_01332: putative bacteriocin precursor, CLOSPO_01332 family


Domain annotation for each model (and alignments):
>> TIGR04067  oc_CLOSPO_01332: putative bacteriocin precursor, CLOSPO_01332 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.2   1.1e-06    0.0047       7      42 ..      51      90 ..      47      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
    TIGR04067  7 lGrtvgdGaqPqaCmCsltgyadyRgss.dsClh...CGC 42
                 + r  g    P aCmC     a+ Rg+   sC+     GC
  MMETSP1174-20130828|11795_1 51 MSRRRGITKCPKACMCVPVAIANERGERrSSCFWalqVGC 90
                 6677777788*******99*******99899*85211455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.59
# Mc/sec: 275.16
//
Query:       MMETSP1174-20130828|11792_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-129  430.6   0.3     2e-129  430.4   0.2    1.0  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    6.8e-43  145.0   2.1      7e-43  145.0   0.6    1.6  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.9e-41  139.4   0.8    8.3e-41  137.9   0.1    1.8  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.8e-21   73.6   0.1    4.4e-21   73.0   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.4   0.2    2e-132    2e-129     149     494 ..       2     353 ..       1     355 [. 0.96

  Alignments for each domain:
  == domain 1    score: 430.4 bits;  conditional E-value: 2e-132
    TIGR01241 149 PciifiDeiDavGrkrgag....lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGm.seklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkel 494
                  PciifiDeiDa+G++r+ g     gggndereqtLnq+L+emDGfe++ gv+v+aatnr+dvLD aLlrPGrfDr+v vd+Pd +gr++ilkvha+ + l+++vdl+kva rt+GfsGa lanl+neaa++aar++++ +++ e+e a dr ++G+ek++ + sek+k+lvayheaGha++g+l++  d v kvti+pr + a+G+tl++P+e   d+ ++s++ l+a++av+lgGrvaee+++g  +vttGas Dl++++++ar+mvt++G+ s+klga a+e+ +     g+++ + +  se+t ++iD+ v+ i+ eay  +++ + +++e le+++++L+e+eti ++e+ +l
  MMETSP1174-20130828|11792_1   2 PCIIFIDEIDAIGKSRAGGaggtNGGGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRHDILKVHARSKPLDSSVDLAKVAARTTGFSGASLANLLNEAAIVAARRERTDISIAEVEFALDRLTVGMEKRTGMKSEKRKELVAYHEAGHAIMGALTPGFDAVGKVTIVPRTNgAGGFTLFVPSEdlqDSGMYSRRYLEAQLAVALGGRVAEELAYGdaDVTTGASGDLQRVADVARRMVTQWGFaSDKLGATAWESPN-----GNGFGQPRMASEATERRIDAAVEDIVREAYAVCRSTMIDNRELLERVKDALMEHETIGNDEIMDL 353
                  9***************87633555789******************************************************************************************************************************************************************************9*********996667899*************************999************************8689*******9887.....5555667899***************************************************9887 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.6   6.8e-46     7e-43     216     362 ..       2     152 ..       1     154 [. 0.94
   2 ?   -2.6   0.0      0.47   4.8e+02     254     269 ..     187     202 ..     180     204 .. 0.86

  Alignments for each domain:
  == domain 1    score: 145.0 bits;  conditional E-value: 6.8e-46
    TIGR01242 216 psiifideidaiaakrld....sstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                  p+iifideidai+  r      ++ +G+ e ++tl q+l+e+dGf+    v viaatnr d+ld allrpGrfdr + v lpd+ Gr +ilk+h+r   l + vdl ++a  t G+sGa l  +  ea + a r+er+ ++++++  a+++
  MMETSP1174-20130828|11792_1   2 PCIIFIDEIDAIGKSRAGgaggTNGGGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRHDILKVHARSKPLDSSVDLAKVAARTTGFSGASLANLLNEAAIVAARRERTDISIAEVEFALDR 152
                  99************998622224567899*****************************************************************************************************************999998887 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.47
    TIGR01242 254 dGfdprgnvkviaatn 269
                   Gfd+ g+v ++  tn
  MMETSP1174-20130828|11792_1 187 PGFDAVGKVTIVPRTN 202
                  59**********9998 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.1   8.1e-44   8.3e-41     547     687 ..       2     148 ..       1     202 [. 0.85
   2 ?    0.0   0.0     0.041        42     403     695 ..     303     342 ..     258     384 .. 0.74

  Alignments for each domain:
  == domain 1    score: 137.9 bits;  conditional E-value: 8.1e-44
    TIGR01243 547 paiifldeidaiapar.....gadls.eavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakeklea 687
                  p+iif+deidai  +r     g++ + +   ++ +nq+lte+dg+e  s+vvviaatnr d+ld allrpgr+dr + v  pd+  r +i+k+h+rs pl   vdl ++a +t g++ga ++ +  eaa+ a r+    ++   +e 
  MMETSP1174-20130828|11792_1   2 PCIIFIDEIDAIGKSRaggagGTNGGgNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRHDILKVHARSKPLDSSVDLAKVAARTTGFSGASLANLLNEAAIVAARRERTDISIAEVEF 148
                  9***********9888433323333213467899**************************************************************************************************998765555444444 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.041
    TIGR01243 403 egkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkd 695
                  e +id   e+i +e     + t+ d +e l  v+ +++                                                                                                                                                                                                                                                              +
  MMETSP1174-20130828|11792_1 303 ERRIDAAVEDIVREAYAVCRSTMIDNRELLERVKDALME-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H 342
                  345555555555555555555555555555555555543.............................................................................................................................................................................................................................................................3 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.1   4.3e-24   4.4e-21     290     392 ..       2     111 ..       1     153 [. 0.76

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 4.3e-24
    TIGR03689 290 PvvvffdemdslfrtrGsGv......ssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl..eedlaead 392
                  P ++f+de+d++ + r  G         d     + q+l+e+dG e  + v+vi a+nr d++d a+lrPGr+d ++ ++ Pd+++ +dil+ +  +  Pl  + dla+  
  MMETSP1174-20130828|11792_1   2 PCIIFIDEIDAIGKSRAGGAggtnggGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRHDILKVHARS-KPLdsSVDLAKVA 111
                  99**********99985443111221568888889********************************************************998654.4553244555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.57
# Mc/sec: 880.69
//
Query:       MMETSP1174-20130828|11797_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   25.6   2.9      0.014   13.1   0.0    2.6  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   5.5e-06     0.023       9      28 .]      19      37 ..      16      37 .. 0.85
   2 !   13.1   0.0   3.5e-06     0.014       4      19 ..      40      55 ..      38      57 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-06
    TIGR01376  9 nNsakgsGGAIyatgkisis 28
                  N a+ +GGA+ a+ ++si+
  MMETSP1174-20130828|11797_1 19 DNAAGRNGGALNAQ-DASIE 37
                 577778********.9*996 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.5e-06
    TIGR01376  4 tilFsnNsakgsGGAI 19
                 ++ F +Nsa   GGA+
  MMETSP1174-20130828|11797_1 40 DTYFQGNSADSDGGAL 55
                 789************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1174-20130828|11799_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|11800_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|11801_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 829.06
//
Query:       MMETSP1174-20130828|11806_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   14.7   5.2     0.0014   14.4   3.6    1.0  1  TIGR03348 VI_IcmF: type VI secretion protein IcmF
     0.0025   14.7   2.4     0.0031   14.4   1.6    1.1  1  TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family
     0.0029   13.2  18.8     0.0035   12.9  13.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.029   12.6   6.5      0.038   12.2   4.2    1.4  1  TIGR02559 HrpB7: type III secretion protein HrpB7
       0.11    8.3   6.0       0.12    8.0   4.1    1.1  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
       0.41    9.0   5.3        0.1   10.9   0.5    2.0  2  TIGR03631 bact_S13: 30S ribosomal protein S13
        1.1    6.3   7.6        1.4    5.9   5.3    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03348  VI_IcmF: type VI secretion protein IcmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   3.6   2.4e-06    0.0014     805     942 ..      53     182 ..      23     193 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-06
    TIGR03348 805 easakaaakklskaekalaeelseadaaaaaepekgaveehFealrrllkeegekgaaldallaaleelqqqLqalaaalnsaqaalkarvksasdalsalqqeaarlPeplrawlgklaaqaaklvlqearsaLnaq 942
                   + a a++k ++++ ++++++l+++++++   ++  a ++++ea+++ l       ++++al ++l++l+++L +++   +++  a +     + + ++ l+++++++ + + ++l++  +++++ + ++++++L+a+
  MMETSP1174-20130828|11806_1  53 ASHAVAEKKVFEDRYDEVEKKLDSEEKTTHDITQ--AMTRQYEAMQEQL------IEKINALESSLTDLKDKLDETEFKHKQTIRAKDDTIRLKDKEIEGLKEKMEDMSKEFGDMLKETLTRMRDRIEMSSHKQLEAD 182
                  2223333444444444444444444444444442..3556666555555......23577777777777777777766666666664477777899***************************************986 PP

>> TIGR01844  type_I_sec_TolC: type I secretion outer membrane protein, TolC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.6   5.3e-06    0.0031     125     191 ..      48     115 ..      32     137 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.3e-06
    TIGR01844 125 kaqeilalaeanlaalkeqlklararfdvGegtrtDvlqaeAr.lasaraqliqaqanlddakaqlee 191
                  +   +++ a a+++++++ +++ ++++d+ e t+ D++qa +r ++ ++ qli+  ++l+++ ++l+ 
  MMETSP1174-20130828|11806_1  48 ERTINASHAVAEKKVFEDRYDEVEKKLDSEEKTTHDITQAMTRqYEAMQEQLIEKINALESSLTDLKD 115
                  45556778899******************************9769999**************999975 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9  13.0     6e-06    0.0035     289     425 ..      31     173 ..      26     192 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-06
    TIGR02169 289 eqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereie.eekkereklkeelkelkeeleelraeleevdkeaaelreelke....lkekleklkeelnelkrel.drlleelkrleeelae 425
                  e+l  k++ ++l++++++   + +++  e +  e+r  + e+++d+ +++ +++ ++++ ++++ +e+l e++++l+  l +l+ +l+e + +++++ ++ ++    + +++e lke+++++ +e  d l+e+l r++ +++ 
  MMETSP1174-20130828|11806_1  31 EMLMYKSECQSLQMQLAERTINASHAVAEKKVFEDRYDEVEKKLDSEEKTTHDITQAMTrQYEAMQEQLIEKINALESSLTDLKDKLDETEFKHKQTIRAKDDtirlKDKEIEGLKEKMEDMSKEFgDMLKETLTRMRDRIEM 173
                  56666777777777777766666677777777777777777777777777777777665144666778888888888888888888888877776665544441222356788888888887766435666666666655543 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.2   6.6e-05     0.038      23     132 ..      38     151 ..      29     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.6e-05
    TIGR02559  23 eleelraaleeadaelaekesqaeakedrldrhaarlddlatgtasltieallacrayrdvleeelgaaeqavaalraalqake....dalaakkrkiaRldaqidvvrerier 132
                  e + l+ +l+e   +  + +++ +  edr d+ +++ld     t  +t     +++a +++l+e++ a+e+ +  l+ +l++ e      + ak  +i   d  i+  +e++e 
  MMETSP1174-20130828|11806_1  38 ECQSLQMQLAERTINASHAVAEKKVFEDRYDEVEKKLDSEEKTTHDITQAMTRQYEAMQEQLIEKINALESSLTDLKDKLDETEfkhkQTIRAKDDTIRLKDKEIEGLKEKMED 151
                  4444555555555555555555566689999999**************9999*****************************865222267888888888888888888888775 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1   0.00021      0.12     541     643 ..      71     173 ..      43     179 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00021
    TIGR03480 541 eeKLaliadlalvlgptlavaeekpapsaeeeaaalrklaaklekalekeekpdakaakkLaeslarll.akakaqaatlealqkallatLpeelerlrdalea 643
                  e+KL+  +++   +  +++ + e+ +++  e+++al+++++ l+ +l++ ++ ++k++ + +++  rl  ++ +  ++ +e+++k++ + L+e+l+r+rd +e 
  MMETSP1174-20130828|11806_1  71 EKKLDSEEKTTHDITQAMTRQYEAMQEQLIEKINALESSLTDLKDKLDE-TEFKHKQTIRAKDDTIRLKdKEIEGLKEKMEDMSKEFGDMLKETLTRMRDRIEM 173
                  6788888888888888888888888888888999999999999999844.444555555556666667555667788999*******************98875 PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.49   2.9e+02      51      70 ..      67      86 ..      38     110 .. 0.50
   2 ?   10.9   0.5   0.00018       0.1      33      99 ..     124     190 ..     116     193 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.49
    TIGR03631 51 lekirevieeeykvegdlrr 70
                  +++++ +++e k+  d+ +
  MMETSP1174-20130828|11806_1 67 YDEVEKKLDSEEKTTHDITQ 86
                 23333333333222222222 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00018
    TIGR03631  33 ekagidedkkvkdlteeelekirevieeeykvegdlrrevslnikrlvdigcyrGlRhrkgLPvrGq 99 
                  +k  i  +  +  l+++e+e ++e +e+  k  gd+ +e+ + ++  +++ +++ l    g+P+  q
  MMETSP1174-20130828|11806_1 124 HKQTIRAKDDTIRLKDKEIEGLKEKMEDMSKEFGDMLKETLTRMRDRIEMSSHKQLEADSGVPISKQ 190
                  5667778888889*************9999999**********************999999999877 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.3    0.0023       1.4      44     134 ..      64     155 ..      29     192 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0023
    TIGR03752  44 peelkalgiegdtpedtlrtlv.aelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleellde 134
                   +   +++ + d  e t  +++ a +++ +  +++l+++ ++l++  ++lk + ++++ + +q+++a+   ++ + ++ +  ++k+e++++e
  MMETSP1174-20130828|11806_1  64 EDRYDEVEKKLDSEEKTTHDITqAMTRQYEAMQEQLIEKINALESSLTDLKDKLDETEFKHKQTIRAKDDTIRLKDKEIEGLKEKMEDMSKE 155
                  22222222233333333333331122333333333333333333333333333333333333333333333333333322222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.73
# Mc/sec: 352.57
//
Query:       MMETSP1174-20130828|11808_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1211.90
//
Query:       MMETSP1174-20130828|11812_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 190.06
//
Query:       MMETSP1174-20130828|11810_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1140.52
//
Query:       MMETSP1174-20130828|11809_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-53  179.0   0.2    2.3e-53  178.8   0.1    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    6.5e-15   53.0   0.1      8e-15   52.8   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.1   1.1e-56   2.3e-53       2     229 ..      15     243 ..      14     244 .. 0.97

  Alignments for each domain:
  == domain 1    score: 178.8 bits;  conditional E-value: 1.1e-56
    TIGR03633   2 aYDraitvfsPdGrlyqveYareav.krgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                   YDr it+fsP+GrlyqveYa +a    g tav ++ +++  l+ +k++ ++l++++s+  +++i  ++g+ ++Gl aD rv + r r+ea ++++ Y+  + v+vlak++ad+ q ytq    r     ++ia vdd+ ++++f+ d +G ++ +ka+a G+++ ++++ lek+     +  +++++a+  l+++l +++k +++ev+v+e  + +f++l ++e+e++l
  MMETSP1174-20130828|11809_1  15 NYDRHITIFSPQGRLYQVEYALKAAdSTGLTAVAVRGADSCALVIQKKVPDRLIDPTSVTYVYEITPKIGCLMTGLTADCRVQVTRMRQEAHQYKFDYGYDMPVHVLAKRIADICQVYTQEASLRMLACNVIIASVDDElGPQIFKIDAAGSYFPFKATASGSKHMEATNWLEKKEIGTGDTTKTVQMAIMCLQHILSSDFKGSDLEVGVIEG-TGRFKTLGEDEIEAHL 243
                  6********************98872579************************************************************************************************************9989**********************************************************************98.779*********9887 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   3.9e-18     8e-15       3     181 ..      45     226 ..      43     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 3.9e-18
    TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvit 181
                  T+v ++  d   l  +k++  ++l+   +v+ v++i++ki+  ++G+ +d +  v  +++ea+ y++  + +++v+ la+ ++ + + +     +   + +++++ vd+  gp+++++D++Gs+   k ta Gs  + a+  Le++     ++ +++++a+  ++  +  D + G  ++v vi+
  MMETSP1174-20130828|11809_1  45 TAVAVRGADSCALVIQKKV-PDRLIDPTSVTYVYEITPKIGCLMTGLTADCRVQVTRMRQEAHQYKFDYGYDMPVHVLAKRIADICQVYtqeaSLRMLACNVIIASVDDeLGPQIFKIDAAGSYFPFKATASGSKHMEATNWLEKKEIGTGDTTKTVQMAIMCLQHILSSD-FKGSDLEVGVIE 226
                  7777778888888777776.589***********************************************************9997644222255667899******99458********************************987777777777777777777766666.456666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1104.31
//
Query:       MMETSP1174-20130828|11813_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1208.53
//
Query:       MMETSP1174-20130828|11811_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-07   27.3   0.0    0.00063   16.6   0.0    2.1  2  TIGR02037 degP_htrA_DO: peptidase Do
     0.0029   14.5   0.0        0.3    7.9   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-07   0.00063     258     317 ..       7      70 ..       2      75 .. 0.83
   2 !    8.7   0.0   7.5e-05      0.15     266     292 ..     102     129 ..      91     163 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.1e-07
    TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvngkki......ksaadlreaigtlkpgkkvklkilRk 317
                   +G+ va+v+  + A+k G++ GDvi+++ng++       +++a+l ++i +++p ++++l++lR 
  MMETSP1174-20130828|11811_1   7 FEGVQVATVA--GNARKRGVEPGDVITHLNGQPFpaefrsNHFAALVQKIRETAPLSSISLDVLRV 70 
                  5788888885..789*****************8644444478999******************995 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 7.5e-05
    TIGR02037 266 vlkgspAeka.GlkaGDvilkvngkkik 292
                  v+k+s A+ka G++ GD++l +ng+ i 
  MMETSP1174-20130828|11811_1 102 VAKSSGAAKAkGIEPGDLVLTINGEVIP 129
                  5566666666599999999999999884 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00015       0.3      73     121 ..      17      70 ..       3      82 .. 0.82
   2 !    4.7   0.0    0.0014       2.8      71      92 ..     104     126 ..      85     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00015
    TIGR00225  73 sPAekagikpgDkIikvdgk....svagmelddavelirGk.kgtkvkleiera 121
                  + A k g++pgD I++++g+    +  + +   +v++ir   + ++++l+++r 
  MMETSP1174-20130828|11811_1  17 GNARKRGVEPGDVITHLNGQpfpaEFRSNHFAALVQKIRETaPLSSISLDVLRV 70 
                  4699****************8888889999999999999652678999999886 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0014
    TIGR00225  71 egsPAekag.ikpgDkIikvdgk 92 
                  + s A+ka+ i+pgD ++ ++g+
  MMETSP1174-20130828|11811_1 104 KSSGAAKAKgIEPGDLVLTINGE 126
                  5678999988***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1174-20130828|11816_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|11820_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   13.3   0.0      0.014   12.6   0.0    1.3  1  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.4e-06     0.014     171     252 ..      87     175 ..      79     188 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.4e-06
    TIGR03448 171 aAFawHPEqGgwteadlaerraeaWfdpaglllavddaegellGFHWtKvHadee.pe......lgEvYvvgvdpaaqgrGLGkaLtli 252
                  aA  w P      ++ l+e ++++  ++a  +l+ +d+ g+++GF   +   + e ++         vY + v+p   ++GLG+ L+++
  MMETSP1174-20130828|11820_1  87 AAIFWEPADTDAGREWLEEDKQDHLVEEAARFLLARDSTGQIVGFVHFRFTMAGEmADklegqcSLLVYDLHVTPLLARKGLGRHLMSM 175
                  67778888888889999*************9*****9*******955444443333333333332359*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 900.17
//
Query:       MMETSP1174-20130828|11819_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-193  641.9   0.0   2.4e-193  641.8   0.0    1.0  1  TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
    4.1e-82  274.5   0.0    4.9e-82  274.2   0.0    1.0  1  TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
      6e-59  197.8   0.0    1.8e-27   93.9   0.0    4.0  4  TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
    7.5e-57  190.8   0.0    7.9e-40  134.6   0.0    3.9  3  TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
    4.6e-05   19.6   0.5      0.014   11.4   0.0    2.9  2  TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent


Domain annotation for each model (and alignments):
>> TIGR02506  NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  641.8   0.0    3e-196  2.4e-193      63     616 .]       2     576 ..       1     576 [. 0.98

  Alignments for each domain:
  == domain 1    score: 641.8 bits;  conditional E-value: 3e-196
    TIGR02506  63 latpvlanagtkksqlaSCfLleveddelesiskaikevaklskkggGiGlnlsklratgskirgsenkskgiipvlklldssveavnqg.gkRpgavavylevwHpdieefLelkknngeeerraknlfiglvipdlfmkrveedkdwtLfspqdvpeleelygeefeeeYerlekekeakkkikvsarelmkkilksavetGepYilfkdavN.khnpnklkgeaikmSNLCtEivqptdeeeevavCnLasvnlanfvlekee.............................fdfekleeavqlavraldnvidlqnyptaeaaksnkrrrsiGiGvmgladvlaklglsYeseearalnkrifeaiyyaaikaSveLAkekGafegFeeskyakGllhidtwektieeleeakteedWeaLrekikeyGlrnsqllAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeldqealiklaaarqkfvdqsiSlnlfleeekevtakkllkllllAwkkGlKT.mYYlrvk 616
                  +a+p+l+ agt+++ql+SCfLl+ + d++  i+++++ +a++sk++gGiG+++ ++ra gs irg++++s+g++p+l+++d+++++v+qg gkRpga+avyle+wH+di+e+L+l+kn+g+ee ra++lf++l++pdl+mkrvee+ dw+L++p+++p+l + yg+efe  Y ++e+e +ak    v+a+el+++il+ ++etG+p++lfkda+N k+n+++   ++ik SNLCtEi+++++++ evavCnLas++l++fv++  +                             fd+e+l ++ +++ r+l++vid + yp+ ea++sn+r+r++GiGv+glad +  l+l+++se+araln+++fe++y+aa++aSveLA+ +G++e+F++s  ++Gl+++d w  + +el     ++dWeaLr+++ ++G+rns llA +Ptas++q+ g++e+ieP++ n+++++ ++gef++vN +L+++l  +glw++ ++++++++ gs++ i ++++++ke+y+t +e++q+ li++aa+r  f+dqs+Sln f+e+   ++  kl++l++  w+ GlKT mYYlr+k
  MMETSP1174-20130828|11819_1   2 HASPTLFHAGTARPQLSSCFLLTLTHDSITGIYDTLQRCADISKSAGGIGISVHNIRASGSYIRGTKGTSNGLVPMLRVFDATARYVDQGgGKRPGAFAVYLEPWHADIFEVLDLRKNHGKEELRARSLFYALWVPDLLMKRVEENGDWSLLCPDECPGLADCYGAEFEALYCKYEREGKAKRV--VKAQELWFAILEAQMETGMPFMLFKDACNaKSNQKH--LGTIKSSNLCTEILEYSSPD-EVAVCNLASIVLSKFVRHTPSsisaapyqasykapddegapgggndaepyFDMENLYRVTKVVARNLNKVIDRNWYPVPEARNSNMRHRPMGIGVQGLADTFILLRLPFDSEKARALNRDMFETMYFAAMEASVELAETEGPHESFPGSPLSEGLFQFDLWGVSADELSG---RYDWEALRKRVMTSGVRNSLLLAPMPTASTAQILGSNECIEPYTTNLYSRRVSAGEFIVVNPHLLQDLISRGLWTDAVRNQLMADGGSVAGISDLPDDVKEIYRTVWEIKQRPLIDMAADRGIFIDQSQSLNAFVES---PDNAKLTSLHFHSWRRGLKTgMYYLRTK 576
                  79**********************9999*************************************************************999*************************************************************************************9999977..*****************************7777777..56*****************9.8****************97779********************************************************************************************************************************************99999976...7****************************************************************************************************************************************...**************************86 PP

>> TIGR02504  NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.2   0.0   5.9e-85   4.9e-82      64     591 ..       3     567 ..       1     576 [. 0.89

  Alignments for each domain:
  == domain 1    score: 274.2 bits;  conditional E-value: 5.9e-85
    TIGR02504  64 nsptlmnaagtelgqlsacfvlpv.eddlesIleaakeaaeifksGgGvGynfSelRpkgdvvrgtgGvaSGpvsfmrlfdsvtevvkqgg.kRRGAqmgilevdHPDieeFIeaKkkeeklaeaklqnfNiSVgvtdeFmeavekddeeyklenprtgeeeeelk..............vkvekevpareLwdkiveaAwksaePGllfldtiNrenpeakkallerinatNPCgEqpll....pyesCnLgsinLakfvkedad...........................aefdleelaeavelatrflDnvidlnkfpleeieeaakktRriGLGimgladlLiklgipYdSeeavelaeevmevlaeeaykaSaelAkerGafplyekskeeeakvlrk....kkalpkeleelierkkleekaekygiRNaalttiAPTGtiSllagtssGiEPvFalvykrkvavggeellevneeveealrekglyekeeelvkevaeegmsveglpevpeelkkvfvtasdvspedHvrmqaavqkwvdsaiSKTiNlpsdatvedveavYllawklglK 591
                  +sptl++ agt++ qls+cf l+  +d+++ I++++++ a+i ks gG+G++  ++R++g+++rgt+G++ G v  +r+fd+++  v qgg kR GA  + le +H Di e ++ +k+++k  e   ++  +   v d  m+ ve+ + +++l  p++       +               k ++ v+a+eLw +i ea  +++ P +lf d  N++++   ++ l++i+++N C E+  +    +  +CnL+si L+kfv++  +                             fd+e+l ++ +++ r l++vid n +p++e ++ + + R +G+G+ glad+ i l +p+dSe+a++l + ++e+++ +a++aS+elA+  G+ + +  s   e  +  +       +  el+  ++ ++l+++    g+RN+ l++  PT ++  + g    iEP+    y r+v+ g  e+++vn+++ + l  +gl++  + + ++ ++ g+sv g++++p+++k++++t  +++++  ++m a    ++d++ S      ++   +++ ++ + +w+ glK
  MMETSP1174-20130828|11819_1   3 ASPTLFH-AGTARPQLSSCFLLTLtHDSITGIYDTLQRCADISKSAGGIGISVHNIRASGSYIRGTKGTSNGLVPMLRVFDATARYVDQGGgKRPGAFAVYLEPWHADIFEVLDLRKNHGK-EELRARSLFYALWVPDLLMKRVEE-NGDWSLLCPDECPGLADCYgaefealyckyereGKAKRVVKAQELWFAILEAQMETGMPFMLFKDACNAKSN---QKHLGTIKSSNLCTEILEYsspdEVAVCNLASIVLSKFVRHTPSsisaapyqasykapddegapgggndaePYFDMENLYRVTKVVARNLNKVIDRNWYPVPEARNSNMRHRPMGIGVQGLADTFILLRLPFDSEKARALNRDMFETMYFAAMEASVELAETEGPHESFPGSPLSEGLF--QfdlwG-VSADELSGRYDWEALRKRVMTSGVRNSLLLAPMPTASTAQILGSNECIEPYTTNLYSRRVSAG--EFIVVNPHLLQDLISRGLWT--DAVRNQLMADGGSVAGISDLPDDVKEIYRTVWEIKQRPLIDMAADRGIFIDQSQSLNAF-VESPDNAKLTSLHFHSWRRGLK 567
                  689***9.9***********99872577888***********************************************************999***********************99987.55778888899*************.688888888887777666688888888888887778999*****************************8885...3469***********976533224568*************98669**************************9****************************************************************************************************5555544..333541.334444444444788889********************************************9..8*****************99..779999999999********************************999999998664322.2233345566666677777666 PP

>> TIGR02510  NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   3.1e-15   2.5e-12      73     206 ..       3     143 ..       1     152 [. 0.86
   2 !   36.5   0.0   5.4e-13   4.5e-10     215     285 ..     189     256 ..     176     264 .. 0.90
   3 !   18.1   0.0     2e-07   0.00016     326     381 ..     327     382 ..     320     391 .. 0.92
   4 !   93.9   0.0   2.1e-30   1.8e-27     387     548 ..     423     582 ..     405     589 .. 0.91

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 3.1e-15
    TIGR02510  73 atPvfanfGldrGlPiscaG.syvedsvedileaqaevgmlaknGgGtssylGdvrPrGadis.dngesngayalaslfdkvinvvsqgetrr.Gefagyvdvehpdleellsiqlend....avqsllygvevgddwlek 206
                  a+P     G+ r    sc+  +  +ds++ i+++    + ++k  gG    + ++r  G+ i+ ++g+sng  ++ ++fd     v qg ++r G fa y++  h+d+ e+l++ +++       +sl+y++ v d  + +
  MMETSP1174-20130828|11819_1   3 ASPTLFHAGTARPQLSSCFLlTLTHDSITGIYDTLQRCADISKSAGGIGISVHNIRASGSYIRgTKGTSNGLVPMLRVFDATARYVDQGGGKRpGAFAVYLEPWHADIFEVLDLRKNHGkeelRARSLFYALWVPDLLMKR 143
                  7899999999999999**9538889*************************************8578**********************9987769****************999876641111467888888888866655 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 5.4e-13
    TIGR02510 215 rarWakllksraevGipyllfrdnanekaPqvikdkGidirasnlcteialPsdeeesfvcilsslnvlly 285
                  + +W  +l++++e+G+p++lf+d  n k+ q  k++G +i++snlctei   s+++e  vc l+s+ ++++
  MMETSP1174-20130828|11819_1 189 QELWFAILEAQMETGMPFMLFKDACNAKSNQ--KHLG-TIKSSNLCTEILEYSSPDEVAVCNLASIVLSKF 256
                  568***********************99887..6777.7***************************99887 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2e-07
    TIGR02510 326 eraraiGlGvlGfhsylqsnrialesaeasllnaeiyktikeraeeasrelaeryg 381
                   r+r +G+Gv G    +   r++++s +a  ln ++++t+  +a eas elae  g
  MMETSP1174-20130828|11819_1 327 MRHRPMGIGVQGLADTFILLRLPFDSEKARALNRDMFETMYFAAMEASVELAETEG 382
                  59************9999**********************************9766 PP

  == domain 4    score: 93.9 bits;  conditional E-value: 2.1e-30
    TIGR02510 387 egkgrrnatllaiaPtkssalilGqvspsiePlvsnyfvqdsakakvvfknPvlekvlkekgkdeekvedeialhnGsvqhldfltdeeksvfktfaeisqmaiidlaaarqkhidqaqslnlvidadekeskdvnvlvveawkkglks.lyyqrseraakaf 548
                     g rn+ lla  Pt s+a ilG   + ieP+++n + +  +++++   nP+l + l  +g  +++v ++++   Gsv  +  l d+ k++++t+ ei+q  +id+aa r   idq+qsln ++++   +  +++ l+ + w++glk+ +yy+r++ a++a 
  MMETSP1174-20130828|11819_1 423 MTSGVRNSLLLAPMPTASTAQILGS-NECIEPYTTNLYSRRVSAGEFIVVNPHLLQDLISRGLWTDAVRNQLMADGGSVAGISDLPDDVKEIYRTVWEIKQRPLIDMAADRGIFIDQSQSLNAFVES--PDNAKLTSLHFHSWRRGLKTgMYYLRTKPAVNAI 582
                  45799******************97.689***********************************************************************************************987..45566788899********659*****9999885 PP

>> TIGR04170  RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.0   9.7e-43   7.9e-40     146     384 ..       3     241 ..       1     252 [. 0.90
   2 !   24.7   0.0   1.7e-09   1.4e-06     414     610 ..     294     474 ..     283     490 .. 0.86
   3 !   24.7   0.0   1.7e-09   1.4e-06     610     682 ..     505     577 ..     499     588 .. 0.89

  Alignments for each domain:
  == domain 1    score: 134.6 bits;  conditional E-value: 9.7e-43
    TIGR04170 146 atPtflnaGkkrrGelvscfllrve.dnlesigrainsalqlskiGGGvalllsklreaGaaikkienaasGvvpvmklledafsyanql.GqrqGaGavylnifhpdilefldtkkenadekvrvktlslGvviPdkffelakenedlylfsPyd...vekeyGkplddidltekydelvaderirkkkinarelleklaelqlesGyPyimfedtvnkana..iegkikmsnlcseilqvseas 384
                  a+Pt++ aG + r +l scfll ++ d++  i  + + +  +sk  GG+++ + ++r+ G  i++ +++++G+vp++++++ + +y +q  G+r+Ga avyl+ +h di e ld +k    e++r ++l   + +Pd +++   en d  l+ P +   +   yG +++ +    ky+     e  +k+ ++a+el   + e q+e+G P+++f+d+ n      + g ik snlc+eil  s++ 
  MMETSP1174-20130828|11819_1   3 ASPTLFHAGTA-RPQLSSCFLLTLThDSITGIYDTLQRCADISKSAGGIGISVHNIRASGSYIRGTKGTSNGLVPMLRVFDATARYVDQGgGKRPGAFAVYLEPWHADIFEVLDLRKNHGKEELRARSLFYALWVPDLLMKRVEENGDWSLLCPDEcpgLADCYGAEFEALYC--KYER----EGKAKRVVKAQELWFAILEAQMETGMPFMLFKDACNAKSNqkHLGTIKSSNLCTEILEYSSPD 241
                  79*******87.689*******985499*************************************************************7368*************************************************************983335789**99987644..5654....444677899*************************9965443699*************998875 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.7e-09
    TIGR04170 414 spdfektvetavraltavsdesdiksvPsvkkgnseahaiGlGamnlhgylarekiaygseeavdftniyfmlvnyyalrrsneiakerGetfkdfeksdyasGey.fdkyvsqefaPktekvkelfegiaiPtaedwaelkdkveeeGlynqyrlavaPtgsisyindstssihPivekieerkegkigkvyyPapf 610
                   +++ +  ++  r l  v d+ +   vP  +++n + + +G+G+ +l   +   ++ ++se a+ +    f ++ + a+++s e+a+ +G  ++ f  s  ++G + fd      +    +         ++ ++ dw +l+++v+ +G+ n+ +la  Pt s + i  s   i P + ++  r+    g+     p+
  MMETSP1174-20130828|11819_1 294 MENLYRVTKVVARNLNKVIDR-NWYPVPEARNSNMRHRPMGIGVQGLADTFILLRLPFDSEKARALNRDMFETMYFAAMEASVELAETEGP-HESFPGSPLSEGLFqFDL-----WGVSAD---------ELSGRYDWEALRKRVMTSGVRNSLLLAPMPTASTAQILGSNECIEPYTTNLYSRRVSA-GEFIVVNPH 474
                  566777778888999999987.5678************************************************************99986.799********9753443.....443344.........467899******************************************9999998766.655555555 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 1.7e-09
    TIGR04170 610 flaeenleyykdayeidaekvidlyaaitkhvdqGlsltlflkdtattrdlnrlqiyafkkGikt.lyyirlkq 682
                   l+++  e y+  +ei ++ +id+ a    ++dq  sl  f+++   +  l  l+ +++++G+kt +yy+r+k 
  MMETSP1174-20130828|11819_1 505 DLPDDVKEIYRTVWEIKQRPLIDMAADRGIFIDQSQSLNAFVESPDNA-KLTSLHFHSWRRGLKTgMYYLRTKP 577
                  577889999*********************************987665.6999***********889****985 PP

>> TIGR02505  RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0027       2.2     212     253 ..      52      93 ..      39     101 .. 0.86
   2 !   11.4   0.0   1.7e-05     0.014     332     476 ..     182     363 ..     167     386 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0027
    TIGR02505 212 lDlSdvRpaGeklkgfGgtasGpvklaklltevaeiLskkag 253
                  + + ++R+ G  ++g  gt++G v++  ++ + a+   +  g
  MMETSP1174-20130828|11819_1  52 ISVHNIRASGSYIRGTKGTSNGLVPMLRVFDATARYVDQGGG 93 
                  56789*************************999987766555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.7e-05
    TIGR02505 332 eteelkqerldlalsegkiengewlqtdssledageaee....vkgtNPCgEIll....ankepCNLaevnllaieedke.................................vdlerafklaarsvarltfsa.ledeksrevlaknrriGvsftGlad.flvlalGtafkrdfenerveatevraf 476
                   ++ +k++ l  a  e ++e g + +  +   +a+ +++    +k  N C EIl     ++   CNLa + l +++ +                                    +l r+ k++ar + +++  + + ++  r++  + r +G+++ Glad f++l+l       f++e+ +a +   f
  MMETSP1174-20130828|11819_1 182 AKRVVKAQELWFAILEAQMETGMPFMLFKDACNAKSNQKhlgtIKSSNLCTEILEysspDEVAVCNLASIVLSKFVRHTPssisaapyqasykapddegapgggndaepyfdmENLYRVTKVVARNLNKVIDRNwYPVPEARNSNMRHRPMGIGVQGLADtFILLRL------PFDSEKARALNRDMF 363
                  55666777777777778888888877655444444333335559999******85333356789*********999888778999999999999999999999999999977777888888899988888766547899*******************994555666......677776666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.69
# Mc/sec: 1180.25
//
Query:       MMETSP1174-20130828|11823_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 838.31
//
Query:       MMETSP1174-20130828|11825_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.43
# Mc/sec: 257.84
//
Query:       MMETSP1174-20130828|11824_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 558.20
//
Query:       MMETSP1174-20130828|11822_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 816.91
//
Query:       MMETSP1174-20130828|11827_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 656.47
//
Query:       MMETSP1174-20130828|11828_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   35.4   0.0    1.2e-07   29.3   0.0    2.1  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0011       4.6     111     142 ..       9      40 ..       2      45 .. 0.85
   2 !   29.3   0.0     3e-11   1.2e-07     253     334 ..      93     177 ..      51     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0011
    TIGR02349 111 skarrgedlevelelsleeavkGvekeieler 142
                  s+++ +e+ ++e+ l+lee+++G +k++ ++ 
  MMETSP1174-20130828|11828_1   9 SRPTGNEERQYEVPLTLEEIYNGGRKSVIVSM 40 
                  67888999****************99987765 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 3e-11
    TIGR02349 253 evkvkehkiferegndllvevpisfvqailgeeievptlegkvklkipag.....tqsgevlrlkgkGvkklkskkrGdllvkvkve 334
                   v  k h++fer g+dllv+v ++ +qa    +ie+p l+gk+ +++ ag     +++g v ++ g+G++++k+ krG+l+v+++v 
  MMETSP1174-20130828|11828_1  93 IVMEKRHRYFERIGDDLLVDVALTQAQAKKRVKIELPLLDGKK-FSMVAGmrsgrIEHGMVREFPGRGMPSKKG-KRGKLYVRFRVI 177
                  567799***********************************53.44444400113455667789******9888.9*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1174-20130828|11832_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1174-20130828|11830_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 419.07
//
Query:       MMETSP1174-20130828|11833_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 244.66
//
Query:       MMETSP1174-20130828|11834_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   12.0   0.5      0.074   11.2   0.3    1.5  1  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   1.8e-05     0.074      37      74 ..      24      62 ..       9      63 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
    TIGR02976 37 stddlalLeelsek.akrleeRidtLEriLdeespnwrr 74
                 + +++a++ e++++  +  + R++++ ++Ld+++ ++r+
  MMETSP1174-20130828|11834_1 24 ALHEMAAICEAQNQlTQNVQTRMQQINSLLDDDKHGSRQ 62
                 3456777777766515679**************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 538.66
//
Query:       MMETSP1174-20130828|11839_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 947.39
//
Query:       MMETSP1174-20130828|11840_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 1015.74
//
Query:       MMETSP1174-20130828|11847_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|11842_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-49  164.8   1.9    1.2e-37  127.5   0.1    2.9  2  TIGR01075 uvrD: DNA helicase II
      8e-49  164.4   0.0    3.3e-36  122.8   0.0    2.8  2  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
    1.3e-44  150.3   0.4    3.7e-30  102.6   0.0    3.4  2  TIGR01074 rep: ATP-dependent DNA helicase Rep
    8.9e-14   48.1   0.0    1.7e-11   40.6   0.0    2.4  2  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
    2.9e-09   33.6   0.1    4.4e-09   33.1   0.1    1.1  1  TIGR02784 addA_alphas: double-strand break repair helicase AddA
    1.3e-06   24.6   0.0    9.1e-06   21.8   0.0    1.9  2  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
    0.00015   17.3   0.0    0.00022   16.8   0.0    1.1  1  TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit


Domain annotation for each model (and alignments):
>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.1     2e-40   1.2e-37     273     578 ..       4     351 ..       1     360 [. 0.72
   2 !   35.6   0.1   1.3e-12   7.3e-10     587     635 ..     389     437 ..     382     470 .. 0.83

  Alignments for each domain:
  == domain 1    score: 127.5 bits;  conditional E-value: 2e-40
    TIGR01075 273 rleqnyrstanileaanaliannderlGk.........klwtegeeGekislysafneldearfvverikaw............eeeGgald......eiavlyrsnaqsrvleeallrasipyriyGGlrfferqeikdalaylrlianrnddaafervvnt.PtrGiGdrtldevrkaarergltlwqaavellqekvlagraasalarfleliealaeetadlplaeqidrvlkdsgllemykqekgekaear..ien..leelvtaarefk..............lpeeaedlleltaflshaaleaGegqadageda..vqlmtlhsakGlefplvflvGleeGlfPse 578
                   l+  yr t+++ +aan+liann++rl k         ++  e ++  +++l   ++  dea fv++ i+++            +++Gg+         +av+ r+  q r +e+ ++   ipyri G   ff+r++++  l+ +rli + +dd af+ v       G+Gd tld +r++are+ ++l++a + ++++ v+ gr a++l++fl+ +   ++      +a+ ++ v+  s +    +++++ ++ +   i++      ++ ar+f+              l   a    ++taf+ h al   + +a++++ +  v+lmt+h akG ef++vf++G eeGl+P  
  MMETSP1174-20130828|11842_1   4 YLDTAYRMTSQLRQAANQLIANNEGRLNKpiakapaddRMLDELQTDASLKLQGLYDGTDEASFVASSINDLllqykwygstgsKSKGGSTGskggelSVAVMVRAAWQLREIEKQMMIFGIPYRIEGAASFFDRADLRFPLTLMRLIIDFDDDIAFKAVASHsCIAGLGDMTLDAMRHLAREHSISLYEAGTLAIEKGVIRGRIAKTLHTFLDDLARWRH------IAVGTEDVVGVSSVSVSLERKHSVDGAVSqiIDEsgYVAYLQQARRFHkregrsasfsslaeLARVAGRFKSFTAFVQHVALGKEQRRAKKTDTTikVKLMTMHRAKGSEFSHVFVTGWEEGLLPLV 351
                  58899**********************9932222222222334455567889999************998642222223333333445544322222259************************************************************9761679*********************************************987765543......33334444444444444444443333222001110011122334444422332222222211222222255799*********9999999999863478*************************965 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.3e-12
    TIGR01075 587 leeerrlayvgitrarkkltltyaearrlygkekyhipsrfieelPeev 635
                  + eerrlayv+itrar   +ltya  r++ g+ +  + srf++el e  
  MMETSP1174-20130828|11842_1 389 VVEERRLAYVAITRARDSAVLTYATRRKIDGQWVECQKSRFLQELEESG 437
                  569******************************************8764 PP

>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.0   5.6e-39   3.3e-36     272     580 ..       2     353 ..       1     361 [. 0.76
   2 !   38.3   0.0   1.9e-13   1.1e-10     586     641 ..     388     443 ..     382     490 .. 0.75

  Alignments for each domain:
  == domain 1    score: 122.8 bits;  conditional E-value: 5.6e-39
    TIGR01073 272 vilLeqnyrstkniLqaaneviennserkpkklwtenseGekitlyead.........tekdearfviseikkl.......rkee.elkag.........dlailyrtnaqsrvleeallkanlpykivGGlkfydrkeikDvlaylrvlanpdDdvsleriinv.PkrgiGassleklrelakeenislfeaikeveeigslaaksaeklkefaelleelreqv.................ellsvtevveevleksgylemLkeektee.aesr...lenldellsvvkefedesedkslvdfleklaLvadldeleeeeG.davtlmtlhaakGLefpvvflvGleegvfPhars 580
                  v+ L+  yr t ++ qaan++i nn+ r +k +  + ++ + +   ++d         + +dea fv+s i+ l        +++ + k g          +a+++r+  q r +e +++  ++py+i G   f+dr +++  l+ +r++++ dDd++++ +       g+G+ +l+ +r+la+e+ isl+ea + + e g + ++ a++l++f + l  +r++                     sv  +v++++++sgy++ L++ +  +  e+r   +  l el++v+  f+      s+++f++++aL  +    ++++   +v lmt+h akG ef  vf++G+eeg++P  r 
  MMETSP1174-20130828|11842_1   2 VLYLDTAYRMTSQLRQAANQLIANNEGRLNKPIAKAPADDRMLDELQTDaslklqglyDGTDEASFVASSINDLllqykwyGSTGsKSKGGstgskggelSVAVMVRAAWQLREIEKQMMIFGIPYRIEGAASFFDRADLRFPLTLMRLIIDFDDDIAFKAVASHsCIAGLGDMTLDAMRHLAREHSISLYEAGTLAIEKGVIRGRIAKTLHTFLDDLARWRHIAvgtedvvgvssvsvsleRKHSVDGAVSQIIDESGYVAYLQQARRFHkREGRsasFSSLAELARVAGRFK------SFTAFVQHVALGKEQRRAKKTDTtIKVKLMTMHRAKGSEFSHVFVTGWEEGLLPLVRH 353
                  578999*************************987655554444333332111111112789**********9863322222112212221111222223358************************************************************9761578************************999999999****************9998753221111111111111101234556799************997654313444112778888888888885......667**************999974499****************************9996 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 1.9e-13
    TIGR01073 586 eleeerrlayvgitraeeeLyltkaksrllfgrleanipsrfleeipdelletkst 641
                   + eerrlayv+itra+++ +lt a+ r++ g+    ++srfl+e+ ++   + s+
  MMETSP1174-20130828|11842_1 388 SVVEERRLAYVAITRARDSAVLTYATRRKIDGQWVECQKSRFLQELEESGQVDMSE 443
                  5679******************************************9875444333 PP

>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   6.3e-33   3.7e-30     269     580 ..       2     350 ..       1     358 [. 0.76
   2 !   42.6   0.1   9.2e-15   5.4e-12     587     642 ..     387     443 ..     381     464 .. 0.82

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 6.3e-33
    TIGR01074 269 vikleqnyrstsrilkaaniliannphvfek.........klfselgeGeklkvieakneeheaerivaeiiaeklvd.................ktqykdyailyrGnhqsrllekalqkkriPyklsggtsffsraeikdllsylrllvnpdddaaflrivn.tPkreiGsatleklgeyaaekekslfeaseelellqklseraaeklkkftellkeirkkaerseave.................lvrslvedidyeewlretsesekaaelrlknveelvewlkemlegdeedekmtleqvvkkltlrdllerkeeeeesdqvqlmtlhaskGlefpyvflvGmeegilPh 580
                  v+ l+  yr ts++ +aan+liann+   +k         ++  el++ + lk+    +  +ea  +++ i +  l+                  k      a++ r  +q r +ek+++   iPy++ g++sff+ra+++  l+ +rl+++ ddd af  +   +    +G+ tl+ + ++a+e+++sl+ea +    +  +++r a++l++f + l++ r+ a  +e+v                  +v ++++++ y  +l++  + +k  e r+   ++l+e  +      +  +  + +  v++++l +   r ++ + + +v+lmt+h +kG ef++vf+ G eeg+lP 
  MMETSP1174-20130828|11842_1   2 VLYLDTAYRMTSQLRQAANQLIANNEGRLNKpiakapaddRMLDELQTDASLKLQGLYDGTDEASFVASSINDLLLQYkwygstgskskggstgsKGGELSVAVMVRAAWQLREIEKQMMIFGIPYRIEGAASFFDRADLRFPLTLMRLIIDFDDDIAFKAVAShSCIAGLGDMTLDAMRHLAREHSISLYEAGTLAIEKGVIRGRIAKTLHTFLDDLARWRHIAVGTEDVVgvssvsvslerkhsvdgAVSQIIDESGYVAYLQQARRFHKR-EGRSASFSSLAELAR----VAGRFK--SFTAFVQHVALGKEQRRAKKTDTTIKVKLMTMHRAKGSEFSHVFVTGWEEGLLPL 350
                  6789999******************98776644434444468999********************99998864333322333344433333222222223589********************************************************87765156789**********************988777777889999999999987776655544333332200000001111111112678888888888888888777776.777777777666544....444444..5899************99***********************************95 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 9.2e-15
    TIGR01074 587 dnveeerrlayvGitrakkeltltlckerrqyGelvrpepsrfldelPqe.dlkwek 642
                  ++v eerrlayv itra+   +lt++++r+  G++v++++srfl+el +  ++   +
  MMETSP1174-20130828|11842_1 387 NSVVEERRLAYVAITRARDSAVLTYATRRKIDGQWVECQKSRFLQELEESgQVDMSE 443
                  57889******************************************7641344444 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.8e-14   1.7e-11     579     805 ..     103     343 ..       8     348 .. 0.82
   2 !    4.8   0.0    0.0017         1     854     877 ..     387     410 ..     374     442 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 2.8e-14
    TIGR02785 579 iviLlrsrekalqileelkkqgIPvkvndaenYfqatEvrvmlslLrvIdNPlQDipLvavl.rSpivgldeeeLakirlen..kdssfyealksyvkaekleeedelaeklkrFldklqkwrefa.................ktqsvseLiwkiYeetgyldyvgg...lpaGkqRqaNLraLyerAkeyEktsFkGLfqFvrfIerlqekqkDlaeavavseeenvVrlmtIHkSKGLEfPvvfvlgl 805
                  +++++r+  + ++i++++   gIP  ++ a+ +f+ +++r  l l+r+I     Di+  av  +S i gl +  L  +r     +  s yea +  +  ek  +  ++a+ l++Fld+l++wr+ a                 +++sv+  + +i +e gy+ y+     + + + R a    L+e A+   ++ Fk    Fv+ +   +e+    a+    ++    V+lmt+H  KG Ef  vfv+g 
  MMETSP1174-20130828|11842_1 103 VAVMVRAAWQLREIEKQMMIFGIPYRIEGAASFFDRADLRFPLTLMRLIIDFDDDIAFKAVAsHSCIAGLGDMTLDAMRHLAreHSISLYEAGTLAI--EKGVIRGRIAKTLHTFLDDLARWRHIAvgtedvvgvssvsvsleRKHSVDGAVSQIIDESGYVAYLQQarrFHKREGRSASFSSLAELARV--AGRFKSFTAFVQHVALGKEQR--RAK---KTDTTIKVKLMTMHRAKGSEFSHVFVTGW 343
                  8999********************************************************9747**************9655236667889887444..445899******************9875555555555555555578999999********99999976222667788999999**999996..789999888888876444443..344...3333446*******************985 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0017
    TIGR02785 854 ellsEemRvlYVAlTRAkekLiLv 877
                  +++ Ee R+ YVA+TRA++  +L 
  MMETSP1174-20130828|11842_1 387 NSVVEERRLAYVAITRARDSAVLT 410
                  5778*************9987775 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   7.5e-12   4.4e-09     749     911 ..     294     453 ..     281     476 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 7.5e-12
    TIGR02784 749 lpsLqafletleaadieiKRemdkerdevRvmTvHaaKGleapvVflvdtgskaaasqrvekllaeeksgekvllwraasaadpkllaeareelkekaeeEyrRLLYVamTRAedrLivcgargkkeskkesWyalvkaalaeageakqedelaeaea..akrla 911
                   +s++af++ ++  + + + + + +  +v++mT H aKG e + Vf+     +      v++   +++++ +   + ++ a  + ++ +  +++ ++   E rRL YVa+TRA+d  +++ a+++k + +  W ++ k+ + ++ e++++  + e +   + r++
  MMETSP1174-20130828|11842_1 294 FKSFTAFVQHVALGKEQRRAKKTDTTIKVKLMTMHRAKGSEFSHVFVTGW--EEGLLPLVRHTYGKNGNQGSSGHFSQEGAGFNPVSGDGDDAV-SNSVVEERRLAYVAITRARDSAVLTYATRRKIDGQ--WVECQKSRFLQELEESGQVDMSEMKEvrGGRVR 453
                  57899999998877766666667777899*****************9644..444445555555555454444444455555555666665555.55667789**************9998887777766..******999999998888888777663333333 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.052        31     435     467 ..       3      34 ..       2      49 .. 0.84
   2 !   21.8   0.0   1.6e-08   9.1e-06     725     817 ..     319     414 ..     295     466 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.052
    TIGR00609 435 ytLdtNyRStaaLveainklFskaeepflekni 467
                  ++Ldt yR t +L +a+n+l +++e + l k+i
  MMETSP1174-20130828|11842_1   3 LYLDTAYRMTSQLRQAANQLIANNE-GRLNKPI 34 
                  68*********************99.4466655 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.6e-08
    TIGR00609 725 aelvkivTiHkSKGLeypiVflpfitdakksddslaiyhddesrkllldlakleeq......akklaederlaedlrllYVAlTRAkkqlviglaelvk 817
                     vk++T+H +KG e+  Vf+    +    +   ++y +++++     + +  +         + a   +  e+ rl YVA+TRA+ + v+  a   +
  MMETSP1174-20130828|11842_1 319 TIKVKLMTMHRAKGSEFSHVFVTGWEEGLL-PLVRHTYGKNGNQGSSGHFSQEGAGfnpvsgDGDDAVSNSVVEERRLAYVAITRARDSAVLTYAT--R 414
                  345899**************9988766544.3348889999888888777777776667666678899999******************9999983..2 PP

>> TIGR02773  addB_Gpos: helicase-exonuclease AddAB, AddB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.7e-07   0.00022     555     684 ..     296     435 ..     248     454 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.7e-07
    TIGR02773 555 dLeeFlevldiGleqlefsliPpalDqvlvgdidraklsntkviyllGvndGvlPakskeegilsdee.relleqkgveL.......ssdskeklldeqflvYlaltsaseklkvsYpla.deeGk..skepsiiikrlke 684
                  +   F++ ++ G eq +      ++ +v + ++ rak s+ +++++ G  +G+lP   +  g   ++     ++q+g          ++   + +++e+ l+Y+a+t+a++  +++Y+     +G+  + ++s +++ l+e
  MMETSP1174-20130828|11842_1 296 SFTAFVQHVALGKEQRRAKKTDTTI-KVKLMTMHRAKGSEFSHVFVTGWEEGLLPLVRHTYGKNGNQGsSGHFSQEGAGFnpvsgdgDDAVSNSVVEERRLAYVAITRARDSAVLTYATRrKIDGQwvECQKSRFLQELEE 435
                  5667888888888888877776666.799**************************9887777665554134667766554111111145557899**********************874223444115667777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.86u 0.19s 00:00:01.05 Elapsed: 00:00:01.62
# Mc/sec: 694.98
//
Query:       MMETSP1174-20130828|11844_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1174-20130828|11849_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1013.02
//
Query:       MMETSP1174-20130828|11850_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.0   0.0      0.022   12.0   0.0    1.0  1  TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family


Domain annotation for each model (and alignments):
>> TIGR03620  F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-06     0.022      65     121 ..      20      76 ..       5      80 .] 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.3e-06
    TIGR03620  65 vniwvekaaevaesfarleaahPgRfllGlGvshaeavgeyrkPlaal.aeYldelda 121
                  ++  +++ aeva+s a+  +a P+ ++ GlG+s a++  e  +P + + ++Y de+ a
  MMETSP1174-20130828|11850_1  20 IDENSKAEAEVAASIAASRNASPDEMISGLGASTAPVYIEI-RPSSGIrKQYKDEVGA 76 
                  4555667789**************************55443.5555441467777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|11851_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|11845_1  [L=1231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.18s 00:00:00.90 Elapsed: 00:00:00.83
# Mc/sec: 1957.57
//
Query:       MMETSP1174-20130828|11853_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-19   65.4   0.0    2.1e-18   63.9   0.0    1.6  2  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    5.4e-13   45.9   0.0    6.1e-13   45.7   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    1.7e-08   30.8   0.0    1.9e-08   30.7   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    0.00098   16.3   0.0     0.0014   15.8   0.0    1.2  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
  ------ inclusion threshold ------
      0.035   11.5   0.0      0.037   11.4   0.0    1.1  1  TIGR01929 menB: naphthoate synthase


Domain annotation for each model (and alignments):
>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   2.5e-21   2.1e-18       9     218 ..       4     209 ..       1     237 [. 0.87
   2 ?    0.9   0.0      0.03        24     249     296 ..     202     250 ..     199     256 .] 0.69

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 2.5e-21
    TIGR02437   9 qvelledgiaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsd.kdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadk.takiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkdainekldykakrqrk 218
                  +ve +ed  +  v    + vn l  + l  + +a+++++a sd +g +l+s+   +f  G +ite+   ++ +e++l ++    +  +  l   p+ +vaa++G+a  GG+ +   +d r++++ +  iGl et+lGi+  f     l  liG+ ++  ++  G  ++ + al +glvd + +   ++aaa ++l + +   +d  a+   k
  MMETSP1174-20130828|11853_1   4 NVEFFEDKRTAQVSLSSSPVNSLSLEMLEAITAAVQSVEA-SDARGFVLASElSSVFSAGLQITEM---YQPDEARLRAFWAALQDTWLTLYGSPLASVAAIDGHAPAGGCLLASCCDERVMARgKFGIGLNETQLGIVAPFWFVGTLDPLIGVRASSRMLQLGTLHQPDAALDLGLVDRLEDHGTVVAAAHEILSRYVR--IDPAARHASK 209
                  5666666655555556678*******************87.7999*999999357899******96...78999*****999999************************************9873578**************99999************************************************99874..5555555555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.03
    TIGR02437 249 papvtavktiekaarfgreea.leiekkafvklakteeakalvGlflnd 296
                  pa  +a k+i++a    + +a  +++ ++fv++a t++ +  +G +l+ 
  MMETSP1174-20130828|11853_1 202 PAARHASKMIHRAPLIEKLRArKQLDIDSFVEFAMTDKVQGTIGAYLES 250
                  5666666777777666555542467778899999999999999998864 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   7.5e-16   6.1e-13      18     196 ..      18     193 ..       8     242 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 7.5e-16
    TIGR02440  18 vpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavel 196
                  +++  +n+l  e+ + +++ ++ ++  ++ rg+vl s     f ag +i+ + +   a   +a+ +  q+    l   p+  vaai g    gg  la  c +rv +  +k  +gl e qlg++        l  l+gv  +  m+  g   ++  al+lglvd    +  ++ +a e 
  MMETSP1174-20130828|11853_1  18 LSSSPVNSLSLEMLEAITAAVQSVE-ASDARGFVLASELSSVFSAGLQITEMYQPDEARL-RAFWAALQDTWLTLYGSPLASVAAIDGHAPAGGCLLASCCDERVMAR-GKFGIGLNETQLGIVAPFWFVGTLDPLIGVRASSRMLQLGTLHQPDAALDLGLVDRLEDHGTVVAAAHEI 193
                  5667899************999886.6789*******************98888776654.555566777888999*****************************975.7999************9999999********************************998888888777765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.3e-11   1.9e-08      21     214 ..       9     198 ..       2     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.3e-11
    TIGR02441  21 gdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGpGlkpaeertieyl 214
                  +d    ++ +  s vn+ls e+ + +++ ++ +e+++a +  vl s   + f aG +i  +   + a+    +    q     l  s    vaai G    GG  la +c+ r+ ++  k  +gl e  lG++        l  l++v+a+  +   G   + d a  lGlvdrl d  G  +  a+e   +y+
  MMETSP1174-20130828|11853_1   9 EDKRTAQVSLSSSPVNSLSLEMLEAITAAVQSVEASDA-RGFVLASELSSVFSAGLQITEMYQPDEAR-LRAFWAALQDTWLTLYGSPLASVAAIDGHAPAGGCLLASCCDERVMARG-KFGIGLNETQLGIVAPFWFVGTLDPLIGVRASSRMLQLGTLHQPDAALDLGLVDRLED-HGTVVAAAHEILSRYV 198
                  56666778888999*********************997.99**************9997666555444.45667778999999*******************************9986.6678***********9999999*********************************855.5777777776666664 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06    0.0014      97     196 ..      97     197 ..      84     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.7e-06
    TIGR03210  97 viarvqgyaigggnvlvticdlti.asekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdei 196
                   +a ++g+a  gg +l++ cd  + a  k  +g    ++g v p +    l  ++g + +  +  l   ++ + al +glv+ +  h  + a  +      
  MMETSP1174-20130828|11853_1  97 SVAAIDGHAPAGGCLLASCCDERVmARGKFGIGLNETQLGIVAPFWFVGTLDPLIGVRASSRMLQLGTLHQPDAALDLGLVDRLEDHGTVVAAAHEILSRY 197
                  6899*****************8651678999***************************************************9999988877766655555 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.5e-05     0.037      96     250 ..      93     249 ..       9     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.5e-05
    TIGR01929  96 lpkpvialvnGyaiGGGhvlhvvcdltias.enarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalna.dldGqaGlqelaGeatllfylteeaqeGrdafle 250
                   p + +a ++G+a  GG  l   cd  + +  +  +g  ++++G     +    l  ++G + +  +  l+  ++   a ++Glv+ + ++  +  ++ e+    +   p a    k+   a  ++ ++  ++l  ++ + f +t++ q    a+le
  MMETSP1174-20130828|11853_1  93 SPLASVAAIDGHAPAGGCLLASCCDERVMArGKFGIGLNETQLGIVAPFWFVGTLDPLIGVRASSRMLQLGTLHQPDAALDLGLVDRLEDHGTVVAAAHEILSRYVRIDPAARHASKMIHRApLIEKLRARKQLDIDSFVEFAMTDKVQGTIGAYLE 249
                  577889*******************987765888999*************************************************99999888777777766666666766655555544423455666667777777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 785.80
//
Query:       MMETSP1174-20130828|11855_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.78
# Mc/sec: 399.35
//
Query:       MMETSP1174-20130828|11856_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|11857_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|11854_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-21   74.8   0.0    2.5e-21   74.3   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.2e-16   58.1   0.2    1.7e-16   57.6   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   1.2e-24   2.5e-21       1      73 [.      69     140 ..      69     154 .. 0.95

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 1.2e-24
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghaglegg 73 
                  ++Y+iLgv + A++ e+k+AY++++ + HPD+n+ +++a e f +++eAy+vL ++e+r+ Y++fg++g++ +
  MMETSP1174-20130828|11854_1  69 NFYHILGVGRGANTLEVKRAYKRMSLELHPDKNP-SPNAVEEFDRMKEAYDVLMNQEQRELYNKFGEDGIKTN 140
                  59********************************.*********************************99875 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   8.5e-20   1.7e-16       4      74 ..      70     140 ..      68     149 .. 0.95

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 8.5e-20
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDre 74 
                  +y +Lg+ r a+  e+k+a+++++   hPD+n  ++a + f  + ea+dvL n ++r+ y+k+G DG+  +
  MMETSP1174-20130828|11854_1  70 FYHILGVGRGANTLEVKRAYKRMSLELHPDKNPSPNAVEEFDRMKEAYDVLMNQEQRELYNKFGEDGIKTN 140
                  8******************************************************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1392.27
//
Query:       MMETSP1174-20130828|11862_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|11861_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1434.11
//
Query:       MMETSP1174-20130828|11866_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-05   17.7   0.0    9.9e-05   17.7   0.0    1.0  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.4e-08   9.9e-05     874     929 ..      52     107 ..      14     135 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.4e-08
    TIGR03443 874 ffdlGGhsilatrlifelrkklvvevplgvifkkPtikafakevdrlkkaelelae 929
                  ++++G  s+ +t+l+ +l k+l v +pl+++f++P+++++++ +++  ++e e   
  MMETSP1174-20130828|11866_1  52 LMEMGLDSLASTQLVRQLSKELGVSLPLTMLFDYPSLNELCAHLKEKCSSESEQPC 107
                  678999**********************************9999887777743332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 535.72
//
Query:       MMETSP1174-20130828|11867_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.76
# Mc/sec: 114.62
//
Query:       MMETSP1174-20130828|11869_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|11871_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 472.61
//
Query:       MMETSP1174-20130828|11872_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1174-20130828|11870_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 1341.89
//
Query:       MMETSP1174-20130828|11875_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|11874_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|11879_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|11878_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-100  334.3  13.4   3.1e-100  334.0   9.3    1.0  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
    1.6e-36  123.7  14.6    2.1e-36  123.4  10.1    1.1  1  TIGR00831 a_cpa1: Na+/H+ antiporter
    1.5e-05   22.4   8.9    1.5e-05   22.4   6.2    1.5  2  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
  ------ inclusion threshold ------
          1    7.0  11.0       0.04   11.6   0.2    3.2  4  TIGR00123 cbiM: cobalamin biosynthesis protein CbiM


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.0   9.3    3e-103  3.1e-100      33     424 ..       8     412 ..       1     427 [. 0.89

  Alignments for each domain:
  == domain 1    score: 334.0 bits;  conditional E-value: 3e-103
    TIGR00840  33 rvvpEsvllivvGllvggiikaaerkdp.vtldsslfFlvLLPpivldaGyflpkreFfenlgsiLlfAvvGtlinAlvlglslYgillilgleeldig...lldallfgslisAvDPvavLavFeevkvnekLyiliFGEsLlNDavtvvlyevlekfvkladeavtivdvvegivsffvvalggllvGvvvgflvalilkftk.hir...viepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflG........vslvs.eneewnwafvvltlvfcviyRvlgvvtlsailnkfr..kvkleikdqlvifyaGlRGAvafaLallldekkveekklfvttvlvvvfltvilqGltikplvevLkvkkkeksk 424
                   ++pEsv++iv+Gl+vg   k  +++d    l++slf++vLLPpi+ daGy+l++++Ff n+g i l+Av Gtli+ +v+g  +Y +  + + + +++g    ld +lfg+lisAvDPva La+  e++ ++ Ly l+FGEs+lNDav++ l+ev+ +f +  d+ vt + +++++ +ff++++g++ +G+  ++ +++ ++      r   + e + vl+++Y+sY la+ + lSgi++l ++gi+l++Y ++Nisek + t  +f+ +l+ l+Etl ++++G        v + + + ++w+ a++ lt+++c + R+l ++ ls i+n +r    +++++ q+v+ +aGlRGAva+aLa l++       k++ +t+l++v+lt ++ G  ++ ++e   ++ +++ +
  MMETSP1174-20130828|11878_1   8 IALPESVVSIVLGLIVGFSAKFFSHEDGiYELTPSLFYFVLLPPIIFDAGYKLHRKRFFRNIGAIFLYAVFGTLISTFVVGYGVYLVNESSA-DYIHLGtgqSLDKMLFGALISAVDPVATLAIMGELECDPMLYALVFGESVLNDAVSITLFEVIDNFFQ--DKGVTLSGIFAALGKFFLITFGSIAIGIFCALFLSFCMRRSDpGLRdfpTFEVVQVLMFAYISYGLAQAIGLSGIMSLFFAGITLRHYNYYNISEKARQTSDTFISVLANLAETLTYVYIGgvvatelsVGTAGkDRKTWQPALIGLTMALCLLGRALNIFPLSFIINLNRpaRRRIPFRMQVVMWWAGLRGAVALALARLMPA---LDSKVYQATTLAIVLLTTVVGGGSTASVLEATGMRASNRME 412
                  489*****************99999886258******************************************************7776654.44444411269*********************************************************..99************************************98762444566999999*****************************************************************8543333112222212356666*****************************88899***************************9...556678999*********************99998888753 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4  10.1     2e-39   2.1e-36      18     389 ..       6     391 ..       1     415 [. 0.80

  Alignments for each domain:
  == domain 1    score: 123.4 bits;  conditional E-value: 2e-39
    TIGR00831  18 krfrvplpvllilaGallglatll.le....veldrevvlllFlPplLfaeamntdlrelrenlreivllalalvvvtvvavgfllrwv.........lGi.plaaalvlgavlsptDavavaglvkeirlPkkllivleGesllnDgaalvvlavavavalGkav..fdpaaavveFvvvavGGilaGlvvgyLvtrllrak....iDepleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvG..vqlpgiiesalkeaevapaaeilalavtavviyaalayvrfltvlkktsnrvlkkk.trevGtreklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavvi 389
                  + + +p +v+ i+ G+++g+ + +  +     el + +++++ lPp++f ++++   + +  n++ i+l a+ + ++ + +vg+ ++ v         lG  ++   +++ga++s+ D+va +++++e      l +++ Ges+lnD+ ++ ++ v  +  + k+v   +  aa ++F  ++ G i++G+  +      +r+      D p  e++  l+ +++++ la+ +++sG++    ag++l ++     is ++R     f +vl  l  ++ +v++G  v ++  + +a k+ +    a i  l ++  ++  al  +        ++n  l ++  r++ +r ++v+ waGlRGa++la+a  +p   l+++++ +  + + l ++v+
  MMETSP1174-20130828|11878_1   6 HLIALPESVVSIVLGLIVGFSAKFfSHedgiYELTPSLFYFVLLPPIIFDAGYKLHRKRFFRNIGAIFLYAVFGTLISTFVVGYGVYLVnessadyihLGTgQSLDKMLFGALISAVDPVATLAIMGELECDPMLYALVFGESVLNDAVSITLFEVIDNFFQDKGVtlSGIFAALGKFFLITFGSIAIGIFCALFLSFCMRRSdpglRDFPTFEVVQVLMFAYISYGLAQAIGLSGIMSLFFAGITLRHYNYY-NISEKARQTSDTFISVLANLAETLTYVYIGgvVATELSVGTAGKDRKTWQPALI-GLTMALCLLGRALNIFPLS----FIIN--LNRPaRRRIPFRMQVVMWWAGLRGAVALALARLMPA--LDSKVYQATTLAIVLLTTVV 391
                  77899**************98754154344458***************************************************9886533333333356523456789***********************************************9998876655115778999**************9888766644444322225789999***********************************9887.9****************************9545555556666555555444444.4435556666666665553....3444..4444156789***************99998877775..68888887776665555554 PP

>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   6.2   1.5e-08   1.5e-05      12     248 ..       6     259 ..       1     276 [. 0.76
   2 ?   -3.7   0.1       1.4   1.5e+03     198     219 ..     367     388 ..     350     394 .. 0.52

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.5e-08
    TIGR00932  12 rrlripsvvgeliaGvilGpsglglisnselvnll..aelGvilL...lFliGLeldlerlkkllkkalgvgvlqvlvsfvllalllshllglkle..........lavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasv...saekekvalvllllkvllaflllvllvkyllrpvlrltaeadrs..elatalsLllvlgsalladllGlsmalGAFlAGvvlseseyrh 248
                  +++ +p+ v  +++G i+G s  ++ s+++++ +l  + + ++lL   +F +G +l  +r+ ++  +++  +v   l+s ++++ ++  + + ++             +++g ++s++  + +++++ el+        lv+g ++++D +++ l  ++  + +     +++  +al  ++l+++ ++ + ++   + l   +r+     r      ++ +L+ + +s  la+++Gls ++  F+AG+ l + +y++
  MMETSP1174-20130828|11878_1   6 HLIALPESVVSIVLGLIVGFS-AKFFSHEDGIYELtpSLFYFVLLppiIFDAGYKLHRKRFFRNIGAIFLYAVFGTLISTFVVGYGVYLVNESSADyihlgtgqslDKMLFGALISAVDPVATLAIMGELECD-PMLYALVFGESVLNDAVSITLFEVIDNFFQDkgvTLSGIFAALGKFFLITFGSIAIGIFC-ALFLSFCMRRSDPGLRDfpTFEVVQVLMFAYISYGLAQAIGLSGIMSLFFAGITLRHYNYYN 259
                  67889999999********66.577888888888756789999987779************************************988888888889999999999778888899999999999*****9865.5556799***************99998887545566666666666666666444443333.33444444444433333533444555555555666********************9888774 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.4
    TIGR00932 198 ltaeadrselatalsLllvlgs 219
                  +++ a  s++  a++L++vl++
  MMETSP1174-20130828|11878_1 367 RLMPALDSKVYQATTLAIVLLT 388
                  3333334445555555555554 PP

>> TIGR00123  cbiM: cobalamin biosynthesis protein CbiM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   3.9e-05      0.04      83     157 ..      13      88 ..       6     114 .. 0.83
   2 ?   -1.3   0.6      0.35   3.6e+02      96      96 ..     197     197 ..      97     250 .. 0.55
   3 ?    0.4   0.6       0.1   1.1e+02     122     154 ..     226     258 ..     169     301 .. 0.68
   4 ?   -0.9   0.0      0.27   2.7e+02     132     167 ..     354     389 ..     337     409 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-05
    TIGR00123  83 avtavlaaivllfqalllah.gglttlgantlsmgvvgpvvayivyklakkaglrsdvavflaalladlltyvvts 157
                  +v++++  +++ f a +++h  g+  l    + + ++ p++    ykl +k  +r+  a+fl a+++ l++ +v  
  MMETSP1174-20130828|11878_1  13 SVVSIVLGLIVGFSAKFFSHeDGIYELTPSLFYFVLLPPIIFDAGYKLHRKRFFRNIGAIFLYAVFGTLISTFVVG 88 
                  5666665566678888888846*********************************99***********99766654 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.35
    TIGR00123  96 q 96 
                   
  MMETSP1174-20130828|11878_1 197 C 197
                  1 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.1
    TIGR00123 122 vayivyklakkaglrsdvavflaalladlltyv 154
                   ayi y la+  gl+  +++f+a +      y 
  MMETSP1174-20130828|11878_1 226 FAYISYGLAQAIGLSGIMSLFFAGITLRHYNYY 258
                  466667777777777767776666544333333 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 0.27
    TIGR00123 132 kaglrsdvavflaalladlltyvvtsvqlalafpip 167
                   aglr +va+ la l+  l + v  +  la+ + ++
  MMETSP1174-20130828|11878_1 354 WAGLRGAVALALARLMPALDSKVYQATTLAIVLLTT 389
                  578888888888888876655555555555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 1420.10
//
Query:       MMETSP1174-20130828|11883_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.75
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|11885_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|11886_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 231.87
//
Query:       MMETSP1174-20130828|11880_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 2019.68
//
Query:       MMETSP1174-20130828|11891_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|11888_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.0   0.0       0.04    9.8   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   9.8e-06      0.04      81     171 ..     127     213 ..      73     218 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.8e-06
    TIGR00870  81 gevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvearakgdefvksqe 171
                   ++G +lL       +     i++  ++  +k++      +d st++   git+l +A+ +    +vk Ll ++a+ +   +g++ ++ ++
  MMETSP1174-20130828|11888_1 127 SSIGGTLLVECCRARYTTESCIIRCAKELVEKHG----AHVDCSTDRDGGGITPLCIAAARGLSRLVKYLLGQRAQRNKSGTGRFRLYGSR 213
                  5678888888877777777777777777776655....66999999****************************99887777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1165.15
//
Query:       MMETSP1174-20130828|11892_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1411.71
//
Query:       MMETSP1174-20130828|11890_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.92
# Mc/sec: 505.00
//
Query:       MMETSP1174-20130828|11895_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 771.31
//
Query:       MMETSP1174-20130828|11889_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.50
# Mc/sec: 1626.11
//
Query:       MMETSP1174-20130828|11896_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1161.50
//
Query:       MMETSP1174-20130828|11898_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1174-20130828|11893_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-32  108.9   0.1    6.8e-32  108.9   0.1    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.1e-28   96.8   0.1    2.4e-28   96.6   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.8e-27   92.6   5.9    6.1e-27   92.2   4.1    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.1e-26   90.0   0.5    5.7e-26   89.1   0.1    1.4  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.7e-26   89.6   1.0    9.3e-26   88.3   0.7    1.8  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    6.6e-23   79.1   0.7    1.1e-22   78.4   0.5    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.3e-21   72.5   0.4      7e-21   72.1   0.3    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    8.9e-20   68.3   0.1    2.3e-19   66.9   0.0    1.6  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.8e-19   65.9   0.0    6.9e-19   65.4   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.8e-18   63.7   0.0    4.4e-18   63.0   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.9e-16   56.2   0.0    1.7e-15   54.9   0.0    1.6  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.7e-14   51.0   0.2      2e-09   35.0   0.0    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      3e-14   50.9   0.1    4.9e-14   50.2   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.8e-14   50.6   0.2    2.3e-13   48.1   0.1    2.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    6.6e-14   49.1   0.7    8.8e-14   48.7   0.0    1.4  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.4e-13   48.1   0.0    4.3e-13   47.2   0.0    1.4  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-13   48.0   0.0    5.1e-13   47.0   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.8e-13   47.2   0.0    6.2e-13   46.5   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.8e-13   46.9   0.1    1.7e-12   45.1   0.1    1.7  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      5e-13   46.8   0.0    2.5e-12   44.5   0.0    2.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.3e-12   45.6   0.0    3.6e-12   44.2   0.0    1.7  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.5e-12   44.9   0.1    7.7e-12   43.2   0.0    1.7  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.4e-12   43.5   0.0    7.1e-10   36.5   0.0    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    7.1e-12   42.4   0.0    9.7e-12   42.0   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.3e-11   42.2   0.0    3.8e-11   40.7   0.0    1.6  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-11   39.9   0.2    6.6e-11   38.9   0.1    1.4  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.9e-10   36.7   0.1    1.5e-06   23.8   0.0    2.0  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.3e-10   38.2   0.0    4.4e-10   37.2   0.0    1.4  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.5e-10   37.7   0.1    3.7e-10   37.2   0.1    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      4e-10   37.0   0.3      1e-09   35.6   0.2    1.6  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.2e-10   36.7   0.0    1.2e-09   35.7   0.0    1.4  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      7e-10   35.9   0.0      9e-07   25.7   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    8.2e-10   36.2   0.0    1.3e-09   35.6   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.7e-09   34.7   0.0    1.7e-08   32.1   0.0    2.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.8e-09   33.9   0.0    2.4e-08   31.6   0.0    1.9  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.1e-09   33.6   0.0    1.4e-08   32.5   0.0    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.8e-08   30.6   0.1    0.00011   19.8   0.0    2.3  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-07   28.6   0.2    1.8e-05   21.2   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.3e-07   27.3   0.0    1.7e-07   26.9   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.9e-07   27.9   0.1    2.9e-07   27.3   0.0    1.4  1  TIGR00955 3a01204: pigment precursor permease
    3.4e-07   27.6   0.0    5.5e-07   27.0   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.8e-07   27.8   0.0    1.1e-06   26.3   0.0    1.7  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.8e-07   26.2   0.1     0.0033   13.8   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    7.8e-07   26.4   0.6    1.1e-05   22.6   0.4    2.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.1e-06   25.2   0.1    8.8e-06   23.2   0.1    2.0  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.9e-06   23.7   0.0      9e-06   22.8   0.0    1.4  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.7e-05   21.2   0.2    0.00014   19.2   0.1    1.9  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.1e-05   20.2   0.0    7.1e-05   19.8   0.0    1.3  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.2e-05   18.6   0.3    0.00043   15.8   0.2    1.9  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00011   18.6   0.0     0.0093   12.3   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    0.00019   17.5   0.0      0.062    9.2   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00047   17.1   0.1     0.0011   15.8   0.1    1.6  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    0.00089   16.2   0.0     0.0013   15.7   0.0    1.1  1  TIGR02924 ICDH_alpha: isocitrate dehydrogenase
     0.0012   15.8   0.0     0.0017   15.3   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
     0.0014   16.1   0.1      0.004   14.6   0.1    1.7  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
     0.0018   13.0   0.0       0.14    6.7   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
     0.0022   13.6   0.2     0.0028   13.2   0.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0057   14.0   0.0      0.017   12.4   0.0    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
  ------ inclusion threshold ------
      0.018   11.0   0.0      0.025   10.6   0.0    1.1  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.076    8.7   0.1        0.1    8.3   0.1    1.1  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.1      0.77        53       5      92 ..     178     266 ..     174     278 .. 0.67
   2 !  108.9   0.1   9.9e-34   6.8e-32     320     529 .]     280     506 ..     260     506 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.77
    TIGR02857   5 lalaallgvvsallliaqAallarvvssliaageala..elltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGp 92 
                  lal+a l vv++ l+   A  +++++ +l +++ a+   e +  +++ +++++++a+l++ ++a   raa  v++  r +l +    +G 
  MMETSP1174-20130828|11893_1 178 LALLATLVVVNTRLASCTAKHVGSLLTEL-SEAYAAGsqENSQDAVLSLIMIVAKAALVVDAQASLLRAASLVRQSRRLDLGHVSSMNGS 266
                  67788888999999999999999998888.444443300334445666667777888888888888888888888777776554444444 PP

  == domain 2    score: 108.9 bits;  conditional E-value: 9.9e-34
    TIGR02857 320 s...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllg..fvepteGailvngaelaeldadswrkqiawvpQkP.llfegtvaenirl......arkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalaeladkivvl 529
                  +    ++ ++vs +++gr+   ++k+v ++++ g+++a+vG+ GaGKstll++l +   +   +G+i+v+g++ ++ +++ w+ ++a +   +  + + +v +n+++      a +  ++++v+eal+ ag++++v+ lp g et + +   gLS  +   l LAr++ + +   l+llDEP  h+D ++e+++ ++lr  +  ++tv++++ +  ++++ad++v l
  MMETSP1174-20130828|11893_1 280 MphdGVRCDGVSASMRGRTdeLVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAeRFASLSVGDNVAIdycdpvAVRVGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKAKdaVLILLDEPSLHMDVQAEEAFFARLRTCIsARHTVVIATSSMRVTQWADTVVYL 506
                  0344899**********9985689******************************995546679***********************9877765156678******97222222345568899**********************************************9988668999*********************987578899999************9965 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   3.6e-30   2.4e-28     448     676 ..     267     508 ..     100     514 .. 0.81

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 3.6e-30
    TIGR03375 448 vereeekrllsreklkGeielknvsfkYpeee.kaaLknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgap......aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallk..dppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvdriivldk 676
                  + ++++ +    +  +  ++++ vs + ++++ + ++k+v+++ k G+  a++G +G+GKstll++l +   +  ++Gs+ + g d++q++ a  + +++ +++ ++ f+  ++ dN+a++          ++e++ +a+++aG+++fv+  p G ++ ++   ++LS     ++ laR++ k  d  ++lLDEP+ ++D ++ee ++ rL+++++  +T+v++t  + + + +d ++ ld+
  MMETSP1174-20130828|11893_1 267 KKKDSSGHRTPGPMPHDGVRCDGVSASMRGRTdELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAIDYCdpvavrVGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISaRHTVVIATSSMRVTQWADTVVYLDH 508
                  4455555556666667778888888888776515689******************************974468899************************9999999887659****99875322333256899**********************************************986215567799*********************999899******************99986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   4.1   8.9e-29   6.1e-27     254     527 ..     204     490 ..     126     493 .. 0.80

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 8.9e-29
    TIGR02868 254 lallvgveavadgrlapvalAvlvLlpLaa..fealaalpaAaqqltrvraaaeRie..evldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallag..lldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpda......tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLl..adapvllLDEPtehLDaeteeelledLlaaeegrtvvlvt 527
                    l  + +a ++++ + ++l ++++++ aa  ++a a l  Aa  ++++r+     +   v   ++ +++ s+ +  + +  +  ++  ++s+s  g     v+k+v+++++ G+ +avvG+ GaGKstLl +l +  ++  +kG++ ++g + +++++   +  v+ l   a  F++ +v +N+ +   d       + e++++aL+ +g ++ +r Lp G++t+l +    lS  e   l lAR++   +da ++lLDEP+ h+D+++ee+  + L+   + r +v+++
  MMETSP1174-20130828|11893_1 204 TELSEAYAAGSQENSQDAVLSLIMIVAKAAlvVDAQASLLRAASLVRQSRRL----DlgHVSSMNGSKKKDSSGHRTPGPMPHDGVRCDGVSASMRGRTDelVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAIDYCDPvavrvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFkaKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIA 490
                  3344444555556666666666666655532257777777777666666543....3224444443333333333333444456777777777776654446*********************************97777889*********************************9879******9766654577779*************************************************86679999***********************999999988885 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.1   8.3e-28   5.7e-26     338     550 ..     285     509 ..     268     520 .. 0.86

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 8.3e-28
    TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllr..fydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svlenir..yGrpda....sdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarail..kdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv.lkadrivvldkG 550
                  ++ + v+ +   r+d+++++++ ++ + G   a+vGP GaGkstll++l+r    + ++G+i+++G d  + + +  ++++a   + +  fa+ sv +n++  y  p a     +e+v +a + a a+ f++ lp G +t l      Ls      + +ar ++  kda ++LLde    +d ++e++    l + ++ r t+via     v + ad +v ld+ 
  MMETSP1174-20130828|11893_1 285 VRCDGVSASMRGRTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAidYCDPVAvrvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFkaKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVtQWADTVVYLDHK 509
                  677888888899***************************************43456689***********************888888877644999*975337777773333479***********************************************833589999**********************************9876661569999999974 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.7   1.4e-27   9.3e-26     247     527 ..     209     507 ..      98     521 .. 0.70

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 1.4e-27
    TIGR01842 247 aylaikgeitaGmiiagsilvgraLaPidqaievWkqfsaarkayk....rlkelleelp..areealklPepegelevenvslvppe.ekkktlkgisfalkaGealaiiGpsgsGkssLarllv..GvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaenia.......RfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalyg..dPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlk 527
                  ay a ++e +  +++   ++v++a   +d   +  +  s  r++ +    +++++  + +  ++ ++ + P p+  ++ + vs+   + + + ++k+++f  k G++ a++Gp g+Gks+L r+l    ++   +Gs+r+ g d +q+   +   s+  l    e f+  +v +n+a          +  ++e+v ea ++ag+  ++  lp+G +t++++   +Ls      + LaR ++   d  l++LDeP   +D + e a+ + l +   ++ tvv+ t  +++++ +d ++ l+
  MMETSP1174-20130828|11893_1 209 AYAAGSQENSQDAVLSLIMIVAKAALVVDAQASLLRAASLVRQSRRldlgHVSSMNGSKKkdSSGHRTPGPMPHDGVRCDGVSASMRGrTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAidycdpvA-VRVGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYLD 507
                  55555555555555555555566555566555555555555555321111334433322200233446668888999999999876551556899******************************833588899*******************************997659*****943222221.1224799************************************************73367999***********************************************9885 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.5   1.6e-24   1.1e-22       7     213 ..     290     509 ..     284     521 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.6e-24
    TIGR03873   7 vsvraggr...livddvdvtaPaGaltgllGPnGsGkstllrlla..GllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGri.Phrslfaadsdedaev....vdra..larvelssladrdlstlsGGerqrvhlaral..aqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgG 213
                  vs ++ gr   l+v+dv+  a  G++t+++GPnG+Gkstllr+l    ++   +G++ ++g d   ++  +  + va + + ++  ++lsv d va+    P   + +++ +  +++    ++r   l  ++++++  +  + ls  e    +lar +  a++  l+lldeP  h+dv+a  + +a +r+ ++ + tvv+a   +   ++ +d vv ld+ 
  MMETSP1174-20130828|11893_1 290 VSASMRGRtdeLVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASLSVGDNVAIDYCdPVAVRVGQKEQVAEALriagAERFvrLLPMGAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRV-TQWADTVVYLDHK 509
                  5555544422279*******************************733588899************999999999**********************987635555555544333322112123332255688899999999***************98567788999**********************************999875.6899****99984 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.3     1e-22     7e-21     331     553 ..     284     517 ..     194     519 .. 0.84

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1e-22
    TIGR02203 331 kvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpR..FyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenva..Ygel...eevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRall..kdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahR.LstiekaDrivvlddGkiverGthe 553
                   v+   v++  +g+ d  +++++ ++++ G ++a+vG+ G+Gkstl+++l R   +   +G+i + g d  +++ a   + va        F   ++ +nva  Y +    +  ++++v eal+ a ++ +v  lp G +t + +    Ls      l +aR ++  kda +++LDe    +D  +e +  a L   +  R t+via   +   + aD +v ld+     +Gthe
  MMETSP1174-20130828|11893_1 284 GVRCDGVSASMRGRtDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAidYCDPvavRVGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFkaKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSsMRVTQWADTVVYLDHK-GTWAGTHE 517
                  57778888888876256689********************************4446679**************************999999976589***87558887443444789***********************************************8446999************************************862555678******9983.34567775 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2         2   1.4e+02      71     170 ..     132     243 ..     101     253 .. 0.45
   2 !   66.9   0.0   3.4e-21   2.3e-19     480     697 ..     286     516 ..     263     519 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2
    TIGR00958  71 lkplvaalalvlpslaslraLvalealksaerlallswsalvvsylaalleaalwaklss..............agaseke.....aeeeqsetadlllrLLkllkrdlkllllalvll 170
                    ++ +  a +++s+++ r   + +a++ + +   +  + ++ s+ + +l a+l  ++ +              +     e     a  +q++++d +l L++++ +   +  +   ll
  MMETSP1174-20130828|11893_1 132 RREMSPNEAAAVVSSSPSRDTTRGGARSRSSSSWRGLHV-VLSSIGSLALLATLV-VVNTrlasctakhvgsllT-----ElseayAAGSQENSQDAVLSLIMIVAKAALVVDAQASLL 243
                  555555555566666666665555544444333333333.222222222222221.1111122233333222221.....122211336666666666666666665555554444444 PP

  == domain 2    score: 66.9 bits;  conditional E-value: 3.4e-21
    TIGR00958 480 eFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallen..lYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNia..Y....GltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvr.kPrvLi.LDeAtSALDaeveqllqe...sksaksrtvlliahrLstvekadkilvlkkgsvvelGth 697
                  +   Vs s   r d+ v+kd tf  + G+++a+VGP+G GKSt   +l++       +G++ + g++ ++y     ++ va        f s sv +N+a  Y     ++  ++e+v  a + a+a+ F+  l+ g +t + +    ls      + +AR + + k +vLi LDe    +D++ e+++ +   +  ++ +tv++ +  + + + ad ++ l +      Gth
  MMETSP1174-20130828|11893_1 286 RCDGVSASMRGRTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFaSLSVGDNVAidYcdpvAVRVGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKaKDAVLIlLDEPSLHMDVQAEEAFFArlrTCISARHTVVIATSSMRVTQWADTVVYLDHKGTWA-GTH 516
                  556688888899************************************9833456689**********************9887765555167*****873353322356667*************************************************9744556552799999******999988653334567789999999*************9854443.666 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0     1e-20   6.9e-19     471     666 ..     301     508 ..     283     518 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 1e-20
    TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqr..lyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlf.srsirdnial..akPai....seekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralva..nPrilildeatsaldyeseavimrnlreickgr.tviiiahrlstvraadrilvlek 666
                   v+++++++ k+G +  +vGp G+Gkstl ++l+r    v  kG + v g d ++   a  +  v+ +++ +  f s s+ dn+a+  ++P +    ++e+v +a ++aGa+ f+  l+ G et +      ls      + lar + +  +  +++lde    +d ++e++   +lr    +r tv+i +  +   + ad ++ l++
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFaSLSVGDNVAIdyCDPVAvrvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARhTVVIATSSMRVTQWADTVVYLDH 508
                  5899*******************************6568999**************9999999998888876655278*****886559**874444689**********************************************985225667779*******************9865555166666667777778888888874 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   6.4e-20   4.4e-18     351     544 ..     303     508 ..     293     515 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 6.4e-20
    TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqr..vydpksgqilidgvdiatvtreslrksiatvfqdagll.nrsirenirlgred......atdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailk..napilvldeatsaldvetearvkdaidalrknrttfiiahr.lstvreadlvlfldq 544
                  v+dv+f+ak g   a+vgp gagk+tl+ +l+r      ++g i ++g d +       + s+a +++ a  +   s+++n+ +   d        +e+v ea + a a+ f+     g +t++ +  + ls  e   l +ar ++k  +a +++lde +  +dv++e    + + +    r t +ia   +   + ad v++ld 
  MMETSP1174-20130828|11893_1 303 VKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFaSLSVGDNVAIDYCDpvavrvGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSsMRVTQWADTVVYLDH 508
                  89******************************933344579*****************************9872579*****998765222221467899********************************************986326888999***********988888887666677777777651556677*******96 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   2.5e-17   1.7e-15       9     206 .]     298     506 ..     290     506 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 2.5e-17
    TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllek..kdsgkvilegkekaklkskkaskllrekl..gylFqnfaLlenetveenlelalklkkkskkekekkkkev.....lekvglekklkkkiyelsgGekqRvalarillk..eselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrviel 206
                  +d+ ++k++ ++ + G+++a+vG  G+GKstlL il +       +g++ ++g+++++++s++ ++ + e +  +  F   ++ +n ++++   +a+ + +k++  +  ++  +     l  +g e+ l k+   ls  e   + lar+++k  ++ lil DEP   +D + +e+ ++ l+   ++ +t++i+t ++ v++ ad v+ l
  MMETSP1174-20130828|11893_1 298 TDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAmvLRKGSIRVQGRDYSQYHSARWQTSVAELMrpAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEALRIAGAerfvrLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYL 506
                  467899******************************9865512589*********99999988777766655225668888888999999988888877766665554444333111114456668889999999***************96326779***********************************************9976 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0     3e-11     2e-09      15      69 ..     301     357 ..     285     382 .. 0.89
   2 !   13.8   0.1   9.5e-05    0.0065     142     207 ..     442     508 ..     420     519 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 3e-11
    TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltr..LyeakegeikvaGldlrrap 69 
                   +++dv+++ + g+++a++GpnGaGkstL+ +l r   +  ++g+i+v G d+++ +
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYH 357
                  5899*****************************994457889**********98865 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 9.5e-05
    TIGR03864 142 eiarallhe..PklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhk 207
                  ++ar +  +    l+LlDe++  +D+++ +a  + +r+ + +++ +v+ at  +   + +d++v l++
  MMETSP1174-20130828|11893_1 442 DLARVMFKAkdAVLILLDEPSLHMDVQAEEAFFARLRTCI-SARHTVVIATSSMRVTQWADTVVYLDH 508
                  6666666541145789*********************988.666788889*****99*****999965 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   7.1e-16   4.9e-14      14     206 ..     301     508 ..     290     519 .. 0.74

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 7.1e-16
    TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdre..iGfvfqhyalfkhltvrdniafG....leir..kkdkakikakv...eellel..vqleklgdrypsqlsGGqrqrvalaral..avepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
                   +++dv ++ k Gs++a++Gp G+Gkstllr++         +G i+++Grd ++ +  + +  +  +++    f  l+v dn+a+     + +r  +k++ +   ++   e++++l  ++ e +  +y + ls  +   + lar +  a +  ++lldep   +d +  + + a lr      +  tv+++      ++ ad +v l++
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAmvLRKGSIRVQGRDYSQYHSARWQtsVAELMRPAERFASLSVGDNVAIDycdpVAVRvgQKEQVAEALRIagaERFVRLlpMGAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARH--TVVIATSSMRVTQWADTVVYLDH 508
                  689*****************************98654311579************9987654127778899999***********8622223344333333333333311134444412344667789*****************985567778889***********99999999988766544..45555566778888999888764 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.1   3.4e-15   2.3e-13      10     187 ..     297     494 ..     290     503 .. 0.75

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 3.4e-15
    TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRila..GLlkpesGevelndkelaeqrd.elaeellylgHldglKaeLsalEnLk..fyaallq..seqktveealekvgLs........gledlpvaq...LsAGqkrRlalarLllsk..aplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                  R  + ++++++f+ + G + +v+GpnG+GK+tLLRil     +   +G++++++++ ++ ++ +++ +++ l   +   a+Ls+ +n+   +   +     ++++v eal  +g +        g+e +++++   Ls      l lar++ ++  a l +LDEP   +D+++ e + ++l+  ++   +v++at   
  MMETSP1174-20130828|11893_1 297 RTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDYSQYHSaRWQTSVAELMRPAERFASLSVGDNVAidYCDPVAVrvGQKEQVAEALRIAGAErfvrllpmGAETVLAKYhdgLSESEWASLDLARVMFKAkdAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSM 494
                  777899*******************************733468899*********99887651567778888887778899******86215544433433333788888766644111111224455555434449999999*******98652267899***********************99998888888654 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         8   5.5e+02     255     281 ..     169     195 ..     164     244 .. 0.69
   2 !   48.7   0.0   1.3e-15   8.8e-14     465     642 ..     299     490 ..     277     512 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 8
    TIGR03797 255 kallssifallnlvlllvyslklalva 281
                  + +lssi +l  l+ l+v++++la ++
  MMETSP1174-20130828|11893_1 169 HVVLSSIGSLALLATLVVVNTRLASCT 195
                  566777777777777777777766543 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 1.3e-15
    TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekP..esGsvlyDGqdlekldvqavRrqlGvVLQng.rllsgsileniagg......as.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvr.k.PrillfDEATSALDNrtQaiVsesleklkvtR..iviA 642
                   +lv++dv+++++ G   a+vG+ G+GKStllr+L        ++Gs+   G+d ++   ++    +   +  + r+ s s+ +n+a++      ++    +++ ea+r ag e  ++ +Pmg  Tv+++  ++lS      l +Ar + + k   ++l+DE    +D ++ ++  + l +   +R  +viA
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAMvlRKGSIRVQGRDYSQYHSARWQTSVAELMRPAeRFASLSVGDNVAIDycdpvaVRvGQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKaKdAVLILLDEPSLHMDVQAEEAFFARLRTCISARhtVVIA 490
                  5789******************************97533222268***********998888888888788865389999******9862222212213458999******************************************9975231446789**999999999888888888777666556666 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   6.3e-15   4.3e-13      14     202 ..     299     499 ..     285     510 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 6.3e-15
    TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllg..aekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenval....alevrgkkeeeiqk..rveevlel.....vgledkakalpeelsgGeqqRvaiaRaivn..kPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
                  +  ++kdv+++ + g+++ ++G+ GaGk+tll++l    a    +G+++v+g+d +++++ +      +++ +    + + + +v +nva+    ++ vr  ++e++ +  r+  + +      +g e    ++ + ls  e     +aR + +  +  l+l DeP   +D + +e  ++ l+++ ++  tv++at   ++++ 
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSAR---WQTSVAELMRPAERFASLSVGDNVAIdycdPVAVRVGQKEQVAEalRIAGAERFvrllpMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQW 499
                  455789*****************************973356789***********9998865...5678999999999999*********95555445554444444331155444333011113445566778899**************976215678999*********************************99887654 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   7.5e-15   5.1e-13      17     218 ..     302     510 ..     286     515 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 7.5e-15
    TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGk..trpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeek.....adkkaglLshGqkqwLeigmll..vqepkllllDePvaGmt.deetektaellkelakersvvvvehDmefvrelaekvtvlheG 218
                   ++d++++ + g++ +++GpnGaGk+tll ++     +   +Gs+ ++g+d ++++ a+  ++ ++     ++ f +l+v +n+ + + +   v   + ++ + +e+ ri+ + + ++L          k    Ls  +   L+++ ++  ++++ l+llDeP   m  ++e++  a+l + ++ +++vv+    m   +  ++ v   h+G
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDpaMVLRKGSIRVQGRDYSQYHSAR-WQTSVAELMRPAERFASLSVGDNVAIDYCDPVAV--RVGQKEQVAEALRIAGAERFVRLLPMgaetvLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDvQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYLDHKG 510
                  5899***************************98651144689**********9998876.5788*******************99988876555..556677778888888888888876541101134445668989999999985552267899***********736788899***************999998655555555444555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0     9e-15   6.2e-13      13     216 ..     299     506 ..     293     520 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 9e-15
    TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaa.......lwdevkdklkksalsLsGGqqqrlciaral..avePevlLlDePtsaLDpiatekieeli.qeLkkkytivivthnmqqaarvsdktaff 216
                  ++ ++kdv+++ k  ++ta++Gp G+Gkstllr l r   +v     +G++ ++g+d  +     ++ +++v  + +  + f+  s+ dnva+ +    +  +   +e v e+L+ a+       l    ++ l k+  +Ls      l +ar +  a +  ++LlDeP+  +D +a e   + + + ++ + t+vi t +m  + + +d+++++
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAMV---LRKGSIRVQGRDYSQY--HSARWQTSVAELMRPAERFAsLSVGDNVAIDYCD-PVAVRVGQKEQVAEALRIAGaerfvrlLPMGAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLrTCISARHTVVIATSSMRVT-QWADTVVYL 506
                  55689******************************9977666...679*********7665..7888999************879******987533.3445555555555555555412222224455678899******************995455666789***********9998766551557888**********876.467777665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1   2.5e-14   1.7e-12       8     199 ..     302     508 ..     298     517 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.5e-14
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLt..tllkPdsGtarvaGyDvvrepdevRrsigvvp..qkasvdedLtarenlel.....lgelyglpkkeaee.raeellelvelkeaadkkv.ktysgGmrr....rlelaasliaqPe..vlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidk 199
                   v++v+++ + g++ +++GPnGAGK+t++++L     +   +G+ rv+G D  ++ +++R + +v    + a    +L+  +n+ +     ++   g ++++ae+ r++    +v l     ++v  +y  G+       l+la+ + +  +  ++ LDEP + +D+++ +a    ++   ++ +t++++t  +  + + ad v  +d+
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDY-SQYHSARWQTSVAElmRPAERFASLSVGDNVAIdycdpVAVRVGQKEQVAEAlRIAGAERFVRLLPMGAETVlAKYHDGLSEsewaSLDLARVMFKAKDavLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMR-VTQWADTVVYLDH 508
                  699*****************************6333455569*********7.566777777777651155566779999999987554445666777777776547766666777766554443266766665422228*******97654326789************************************7.7889999988886 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.8   4.6e+02      42      64 ..     114     136 ..     108     144 .. 0.85
   2 !   44.5   0.0   3.7e-14   2.5e-12       6     185 ..     301     492 ..     297     497 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6.8
    TIGR01166  42 lrPksGkvlldGeeldysrkgll 64 
                  l  +sG++ +d +e+ +sr+++ 
  MMETSP1174-20130828|11893_1 114 LGSTSGALKIDTAETVHSRREMS 136
                  66799**************9875 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 3.7e-14
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhln..GllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaa...........vdisgleerpthllsgGekkrvaiagav..alrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                   v+k++ ++++ g+ +a++G+nGaGkstll+ l+    +  ++G + ++G+  dys+    ++++ va +++ p +++ + +v ++va    +        +++v eal+            ++++ +  +  + ls+ e   + +a ++  a  + ++lldeP+  +d + +e + + lr    + +tvvi+t 
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGR--DYSQYHSARWQTSVAELMR-PAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEALRIagaerfvrllpMGAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATS 492
                  489****************************99722478889********8..79999999*****998776.77889999*******986654444444455555555540000011111134555566778889****999999998732344456789********************************96 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.2e-14   3.6e-12      21     199 ..     310     503 ..     298     513 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5.2e-14
    TIGR01277  21 veaGervailGesGaGkstllnliaG..flepasGeikvndkdht..rsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarq...........vGiadylerlpeelsGGqrqrvalarclvrek..pillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqv 199
                   + G + a++G+ GaGkstll ++     +   +G+i+v+++d+   +sa ++  v+ l++  + fa l+v +n+++     + +   qke+v ++ r            +G +  l++  + ls  +   + lar + + k   ++lldep   +d +  e  +a +++  + +  t+++ t s+  +++ a+ v
  MMETSP1174-20130828|11893_1 310 AKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSqyHSARWQTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEALRIagaerfvrllpMGAETVLAKYHDGLSESEWASLDLARVMFKAKdaVLILLDEPSLHMDVQAEEAFFARLRTCISAR-HTVVIATSSMR-VTQWADTV 503
                  5679999***************997512455669*****9887651168999999***********************999999********9987665111112222225666667777788999999*********9765215789***********9999999998876665.57777766553.44455555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.1e-13   7.7e-12       7     202 ..     290     498 ..     285     510 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.1e-13
    TIGR00960   7 vskaykg.aaelaldnvtvkiekGelvflvGhsGaGkstllklilg..iekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekv...........GlkdkakalPvqlsgGeqqrvaiaravvn..kPallladePtgnlddelsrdilelleevnraGttvlvathdenlve 202
                  vs + +g + el +++vt++ + G+++ +vG+ GaGkstll+++    +    +G irv+g d ++++  +    +  +  + +  + +   +v dnva+      +     +e+v +al+             G +    ++ + ls  e   +++ar + +  +  l+l deP+  +d +  +  +  l++   a  tv++at    + +
  MMETSP1174-20130828|11893_1 290 VSASMRGrTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSAR---WQTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEALRIAgaerfvrllpmGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQ 498
                  66666652457899****************************997622345679********988776655...56788889999999999********965432222223334444444444000000111114444445556689************9975215667889*********************************9877654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     1e-11   7.1e-10      12      68 ..     299     355 ..     292     370 .. 0.93
   2 ?    4.8   0.0     0.051       3.5     162     209 ..     452     499 ..     390     516 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1e-11
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlle 68 
                  d+ ++k+++ + k G + a++GpnG+GkstL ++l  ++++ + +G+i+++g+d ++
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAMVLRKGSIRVQGRDYSQ 355
                  567899**********************************************99766 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.051
    TIGR01978 162 ePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllel 209
                  +  l++LDe    +Dv a  + ++ + ++ + +++++i t   r+ + 
  MMETSP1174-20130828|11893_1 452 DAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQW 499
                  456899********************************9999998764 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.4e-13   9.7e-12     488     684 ..     301     509 ..     253     519 .. 0.84

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.4e-13
    TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvk..ffqaesGeillngkslkdidkhelrqlinylPqePfif.sGsilenlllgakenv.....sqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalaralls..dskvlildestsnldlltekkivenllkl..kdktiifvahrlsvakksdkiivldeG 684
                   v++d++++ k  + +++vG  G+Gkstl ++l +      ++G i ++g + ++    + + +++ l +    f s s+ +n+ ++  + v     ++e++ +a++ia  +  ++ lp+G +t l++    +s      l lar ++   d+ +++lde + ++d+  e+    +l +      t++  +  + v++ +d ++ ld+ 
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFaSLSVGDNVAIDYCDPVavrvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCisARHTVVIATSSMRVTQWADTVVYLDHK 509
                  4899*****************************872245789***********************9997666666156999****9865443222226899*********************************************985326667789****************9996542235688888889*************985 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   5.6e-13   3.8e-11      14     219 ..     299     506 ..     290     511 .. 0.76

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 5.6e-13
    TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsg.......rlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRal..aqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivgl 219
                  ++ ++k+v ++ k G ++av+G+ GaGkstllr + r       +gsi ++g++ ++ + +   +++++++ ++   +  + l+v +nv +        r+g+k+++++ l++   +  e+ +  L  +g + + ak  d Ls  +   + +aR +  a+++ lil DEP   +D ++ +  +  l++ +     tv++   ++ + +++ad +v l
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAmvLRKGSIRVQGRDYSQYHSA---RWQTSVAELMRPAERFASLSVGDNVAIDycdpvavRVGQKEQVAEALRI---AGAER-FVRLLPMGAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRT-CISARHTVVIATSSMRV-TQWADTVVYL 506
                  67799******************************9965533789*********9977655...5677788888888888888899998654111111145555555544443...33333.33455688899999999****************93345789*******************999987.55666777777777664.4677777655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   1.7e+02     175     226 ..     205     256 ..     131     265 .. 0.50
   2 !   38.9   0.1   9.7e-13   6.6e-11     489     696 ..     297     517 ..     228     519 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.5
    TIGR03796 175 afskifvDeilveeaqewlrplllgllltallqvvltllqlallrrleikla 226
                   +s  +      ++++  l  ++++  +++++ +  +ll+ a l+r +++l 
  MMETSP1174-20130828|11893_1 205 ELSEAYAAGSQENSQDAVLSLIMIVAKAALVVDAQASLLRAASLVRQSRRLD 256
                  3333333333333334444444444445556666666777777776666665 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 9.7e-13
    TIGR03796 489 aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkpreeiprevlanslalvdqdivlfeg.tvrdnltl..wdeti....peedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvk..nPsiLilDEatsaLDaetEkaidenlrrRgc...tciivaHRLstiRdcdeiivlerGkvverGtHe 696
                  ++++ +++d++++ k G+  A+vG+ G+Gkst+ +++         +G+i++ g++ ++++ +  ++s+a        f++ +v dn+++   d+      ++e++ +A++ A  +  +  +p g e+ la+    ls  +   l++AR + k  +  +++lDE    +D ++E+a  ++lr       t++i +  +     +d ++ l++      GtHe
  MMETSP1174-20130828|11893_1 297 RTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASlSVGDNVAIdyCDPVAvrvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISarhTVVIATSSMRVTQWADTVVYLDHKG-TWAGTHE 517
                  5678899******************************7522556679*************************99999997659*****98533432223335789********************************************9964214555568*****************99975331114444444555555678888888633.3456665 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00018     0.012    1233    1290 ..     301     361 ..     285     370 .. 0.74
   2 !   23.8   0.0   2.2e-08   1.5e-06     531     623 ..     415     510 ..     401     517 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00018
    TIGR01271 1233 avlqdlsfsveagqrvgllgrtgsgkstllsallr...llstegeiqidgvswnsvtlqkw 1290
                    v++d++f  ++g    ++g  g+gkstll  l r   ++  +g i+++g  +      +w
  MMETSP1174-20130828|11893_1  301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpaMVLRKGSIRVQGRDYSQYHSARW 361 
                   5788888888888888888888888888888888744455667777777777666666666 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2.2e-08
    TIGR01271 531 iallaekdktvlgeggitlsggqrarislaravyk..dadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilll.heg 623
                  + ll+   +tvl++    ls  + a + lar ++k  da l lld p  ++dv +e   f +    + a +t ++ ts +   + ad ++ l h+g
  MMETSP1174-20130828|11893_1 415 VRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYLdHKG 510
                  6677788889999999999**************9544899**********************999999*******************998763555 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   6.4e-12   4.4e-10      14     159 ..     301     462 ..     293     508 .. 0.75

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 6.4e-12
    TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvg..llkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelgl....ealkkkekkip........eeiyelFPvlke.mlkRrgGdLsGGqqqqlaiaRaLvt..ePklllLDePt 159
                   v++dv+++++ g+++av+G ng+Gk+tll+ l     +  ++G+i+++g+d ++ ++ +r ++ +a      e f++l+v +n+ + +    +++  +++++         e+   l P+  e +l++    Ls      l +aR++ +  +  l+lLDeP+
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHS-ARWQTSVAELMRPAERFASLSVGDNVAIDYcdpvAVRVGQKEQVAealriagaERFVRLLPMGAEtVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPS 462
                  589****************************99852267789**********999876.689999*******************9875411112222222222201111122555667777544155666667888888888888887541144566778885 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   5.4e-12   3.7e-10       7     177 ..     283     473 ..     277     510 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.4e-12
    TIGR03258   7 sGvvleslrvaygarv...vlddlsleieaGellallGksGsGkttllravaG..fvkadGGrllvadrdlt..hlppykrnlallvqnyalfphlkveenvafG......lrarkqskaliaervadalklvqlsdaa.....arlpaqlsGGqqqrvalaralvvrpd.vl.lldeplsaldaqlrasv 177
                   Gv+ + ++ +  +r+   v++d++++ + G + a++G+ G+Gk+tllr++     +    G + v +rd +  h   ++ ++a l++    f  l v +nva        +r  ++ +   a r+a a + v+l  ++     a++   ls      + lar +    d vl lldep   +d q  ++ 
  MMETSP1174-20130828|11893_1 283 DGVRCDGVSASMRGRTdelVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSqyHSARWQTSVAELMRPAERFASLSVGDNVAIDycdpvaVRVGQKEQVAEALRIAGAERFVRLLPMGaetvlAKYHDGLSESEWASLDLARVMFKAKDaVLiLLDEPSLHMDVQAEEAF 473
                  58888888888887755559******************************974112333448999**999864489999************************862222115555555555666888887777765444112236899999************9865443244389***999998876554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.2   1.5e-11     1e-09      14     197 ..     297     496 ..     285     514 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.5e-11
    TIGR01288  14 ygdkvvvndlsftiaagecfgllgpngagkstiarlvlg..lispdegkitvlgepvpararlarakigvvpqfdnldr..eftvrenllv.fgryfglstreieevipsll.....efarle.skadvrvadlsggmkr....rltlarali..ndpqllildepttgldpharhliwerlrsllargktilltthlmee 197
                    d +vv+d++f    g    ++gpngagkst+ r++     +   +g i v g +  ++   ar +  v   +   +r   ++v +n+ + +     ++  + e+v  +l       f rl    a++ +a+   g+       l lar +   +d  l++ldep+  +d +a    + rlr+ ++  +t++++t  m  
  MMETSP1174-20130828|11893_1 297 RTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRD-YSQYHSARWQTSVAELMRPAERfaSLSVGDNVAIdYCDPVAVRVGQKEQVAEALRiagaeRFVRLLpMGAETVLAKYHDGLSEsewaSLDLARVMFkaKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRV 496
                  46899******************************997522455689****99876.68999999999999888877763367889998654888888888777777666532222279997526799999998888864222279999998633689999**********************************998864 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.7e-11   1.2e-09       1     200 [.     302     507 ..     302     519 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.7e-11
    TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLee........aeevlkkypfelsGGmlqRvmia..lallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavme 200
                  +v+dv +++k g ++a+vG  G+Gks+  l il+  d+ ++  +G+i+++g+++++  + r ++    l  P + f  l    + +++ +        q ke+++eal+ +g e         ae+vl ky   ls      + +a  +  + +a l++ DeP+  +Dv+++  +   l++  + r +  ++ t  ++v ++ ad v+ ++
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTL-LRILKR-DPAMVLRKGSIRVQGRDYSQYhSARWQTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRVGQ-KEQVAEALRIAGAERfvrllpmgAETVLAKYHDGLSESEWASLDLArvMFKAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTV-VIATSSMRV-TQWADTVVYLD 507
                  599**********************964.556664.55778889***********9954454444444667******9987777777766554433322.23455555554433211111122799**********988776666622234567788899**********************9999875.567888986.78999988776 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.3e-08     9e-07     332     371 ..     297     336 ..     263     351 .. 0.86
   2 !    8.2   0.0    0.0026      0.18     441     482 ..     430     473 ..     377     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.3e-08
    TIGR03719 332 fgdklliddlsfklpkggivGviGpnGaGkstlfklitgk 371
                    d+l+++d++f+   g+i  v+GpnGaGkstl++++  +
  MMETSP1174-20130828|11893_1 297 RTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRD 336
                  56899*******************************9765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0026
    TIGR03719 441 vgelsGGernrvhlakll..keggnvllldePtndldvetlral 482
                   + ls  e   + la+++   +++ ++lldeP+  +dv++ +a+
  MMETSP1174-20130828|11893_1 430 HDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAF 473
                  56688888888888887632345667788999999998876654 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.8e-11   1.3e-09      19     178 ..     302     478 ..     290     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.8e-11
    TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaG..LekqdaGaillggrditrlppqkrdyGi..vfqsYaLfPnltvaeniayGLknkklkreevaerveelLel...........vglsgseekyPgqlsGGqqqrvaLaralalsPg..lLLLDePlsaLDakvrekLreelk 178
                  ++kd+ ++ k g + +++GP G Gk+tLLri+         +G+i ++grd ++  +++ +  +  +++    f +l v +n+a    +    r  ++e+v+e+L +           +g +++  ky   ls      + Lar +  + +  l+LLDeP   +D +  e +   l+
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVaeLMRPAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEALRIagaerfvrllpMGAETVLAKYHDGLSESEWASLDLARVMFKAKDavLILLDEPSLHMDVQAEEAFFARLR 478
                  789*****************************8611445789************999887765533899999************999888888888888888888762222221112224467789*******************97664433899****99999888776555544 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.4e-10   1.7e-08       4     213 ..     287     505 ..     285     511 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.4e-10
    TIGR02211   4 cenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggld..kptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPllis...kkskkeakera..kel..lekvglekrinkkpselsGGerqrvaiaralvnkPk..lvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvle 213
                  c+ ++ s  +g+++  v+k+v ++ + g ++a+vG  G+Gkstll +l         +G++ ++G++ s+  s++  +   + +    +f  l    ++  +   P+ ++   k++++ea ++a  +++  l  +g e  + k+   ls  e     +ar + +  +  l+l deP  ++d ++ +++f  l+   ++++t ++++t  +++ + +d v+ 
  MMETSP1174-20130828|11893_1 287 CDGVSASM-RGRTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPamVLRKGSIRVQGRDYSQYHSARWQTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRvgqKEQVAEALRIAgaERFvrLLPMGAETVLAKYHDGLSESEWASLDLARVMFKAKDavLILLDEPSLHMDVQAEEAFFARLRTCISARHT-VVIATSSMRVTQWADTVVY 505
                  56665554.466777899******************************8643114579***********999998888777888888888777665555555555776651113344555444421444225567889999********************987654227789****************999988777665.6788888888877777665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.5e-10   2.4e-08      13      68 ..     298     355 ..     289     375 .. 0.85
   2 ?   -0.6   0.0       2.3   1.6e+02     151     204 ..     452     505 ..     427     512 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.5e-10
    TIGR03522  13 gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltg..ylkadsGsvavagedvlk 68 
                  + + ++++v+f+a+ G+i+  +GPnGaGkstl++il     +    Gs+ v+g d  +
  MMETSP1174-20130828|11893_1 298 TDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQ 355
                  567899*****************************97522677889999999998765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 2.3
    TIGR03522 151 dPkvlildePttGldPnqlve.irevikeiakdktvilsthimqevealcdrvii 204
                  d  +++ldeP+  +d     +   ++   i+   tv+++t  m+ v    d v+ 
  MMETSP1174-20130828|11893_1 452 DAVLILLDEPSLHMDVQAEEAfFARLRTCISARHTVVIATSSMR-VTQWADTVVY 505
                  33445689999999976544413456667888899999998886.4445566655 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     2e-10   1.4e-08      14     216 ..     296     508 ..     291     511 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2e-10
    TIGR02982  14 gelrkqvlfdinleiepgeiviltGpsGsGkttlltligg..lrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrm......a..lelkeklsakeakakaeelleavglee..rldykpedlsgGqkqrvaiaralvar..PklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmed 216
                  g++ + v++d+ ++ + g i  + Gp G+Gk tll ++       +++G+++v g++ ++ + ++    + ++  +++  + + sl + +nv +      a  +  ke+++++ + a ae +++ + ++    l ++ + ls+     + +ar + +     l+l deP   +d ++ ++    l++    +  t+++ t   r+ + ad +v++++
  MMETSP1174-20130828|11893_1 296 GRTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSAR---WQTSVAELMRPAERFASLSVGDNVAIdycdpvAvrVGQKEQVAEALRIAGAERFVRLLPMGAetVLAKYHDGLSESEWASLDLARVMFKAkdAVLILLDEPSLHMDVQAEEAFFARLRTCISAR-HTVVIATSSMRVTQWADTVVYLDH 508
                  67778899*****************************9752256789********9977655544...4456777788888888888888887521111120022333344444455556665555444344899*******************97651156899*******************99987766.5899****************9975 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-06   0.00011       3      43 ..     310     352 ..     308     361 .. 0.80
   2 !    8.3   0.0    0.0053      0.36     129     186 ..     450     506 ..     432     517 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-06
    TIGR03771   3 vdkGellgllGpnGaGkttllrail..glikvakGsvkvagks 43 
                  ++ G + +++GpnGaGk+tllr +     +  +kGs++v+g+ 
  MMETSP1174-20130828|11893_1 310 AKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRD 352
                  6789999***************88633234459*******985 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0053
    TIGR03771 129 avkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll 186
                  a +  l+lldep   +d+ ++e +   +++  ++ ++++++t  +    + +d vv l
  MMETSP1174-20130828|11893_1 450 AKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMR-VTQWADTVVYL 506
                  45567899******************9999999*******998764.44556666655 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.6e-07   1.8e-05     453     499 ..     285     333 ..     239     336 .. 0.83
   2 ?    5.4   0.0     0.016       1.1     577     658 ..     426     512 ..     412     513 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.6e-07
    TIGR00954 453 ikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRil 499
                  ++++ +   +    ++ ++++++f+ k G+   ++GPnG GKs l Ril
  MMETSP1174-20130828|11893_1 285 VRCDGVSASMRgrTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRIL 333
                  555555544433367899******************************9 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.016
    TIGR00954 577 vqdWkdvLsgGekqRiamARlfyHkPk..favLDEctsAvsvdvEdklyelakev...gitllsvshrksLwkyHeylLkldgkGky 658
                  ++ ++d Ls  e   + +AR+++       ++LDE    + v+ E++++  ++ +   + t++  +    + ++ + +++ld kG +
  MMETSP1174-20130828|11893_1 426 LAKYHDGLSESEWASLDLARVMFKAKDavLILLDEPSLHMDVQAEEAFFARLRTCisaRHTVVIATSSMRVTQWADTVVYLDHKGTW 512
                  5788999***************97543115679****************99887511144444444445566788899999999998 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.4e-09   1.7e-07    1275    1504 ..     276     519 ..     265     523 .] 0.74

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.4e-09
    TIGR00957 1275 ppsswpksg.rvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfr..inesaegeiiidglniakiglhdlrfkltiip.qdpv.lf.sgslrmnl.....dpfsqy..sdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallr.ktkil.vldeataavdletdnliqstirtqfedctvltiahrlntimdytr.vlvld.kgevaefdaps 1504
                    p   p+ g r +    s+r r d +lv++d++ + +gg    +vg  gagks+l   l r       +g i+++g + ++   h  r + ++     p   f s s+  n+     dp +     +e+v  al +a  + fv  lp + +   a+  + ls  +   + lar +++ k  +l +lde +  +d+++++   + +rt +     + ia     + +++  v+ ld kg  a     s
  MMETSP1174-20130828|11893_1  276 TPGPMPHDGvRCDGVSASMRGRTD-ELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQ--YHSARWQTSVAElMRPAeRFaSLSVGDNVaidycDPVAVRvgQKEQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKaKDAVLiLLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADtVVYLDhKGTWAGTHEAS 519 
                   566666666456666778888887.7****************************999998832344579********9987..5777777665431223312213333333222223787754226899*********************************************986344454168**********************998877777776666666554144455366666555555 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.2e-09   2.9e-07      33      94 ..     295     355 ..     285     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.2e-09
    TIGR00955  33 rkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea 94 
                  r +    ++k+v+ +ak G + Av+G+ GaGK+TLl +l +r+++ + ++g++ + G+   +
  MMETSP1174-20130828|11893_1 295 RGRTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRIL-KRDPAMVLRKGSIRVQGRDYSQ 355
                  445566789***************************998.588888999999*****97764 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     8e-09   5.5e-07      14     206 ..     304     507 ..     290     521 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 8e-09
    TIGR02142  14 LdvdlelpgkgvtalFGrsGsGktslirlia..GLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLr..Y........Glkraraeerri.seekvielL..giehLleRlpgkLsGGekqRvaigRAlLssPe..LLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
                   dv ++ +g  +ta+ G  G+Gk++l+r++     + +++g i ++g+ + + +     +  +  v+     A+ F+ lsv +n+   Y        G k+  ae  ri   e+ ++lL  g e +l ++   Ls  e     ++R +  + +  L+l+DeP   +D +  +  +  L+   +  +   + ++ s   v++ ad+vv l+
  MMETSP1174-20130828|11893_1 304 KDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDYSQYHS----ARWQTSVAELMRPAERFASLSVGDNVAidYcdpvavrvGQKEQVAEALRIaGAERFVRLLpmGAETVLAKYHDGLSESEWASLDLARVMFKAKDavLILLDEPSLHMDVQAEEAFFARLRTCISARH--TVVIATSSMRVTQWADTVVYLD 507
                  37999999*9*******************97224677899999999998766554....6677889999999999999999999642233322222266666666555515789****9445578***********************9765444899****999999988876665555443333..4566777778999999999886 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.6e-08   1.1e-06      12      93 ..     299     386 ..     290     413 .. 0.76
   2 ?   -2.3   0.0       8.8     6e+02     144     165 ..     454     475 ..     441     507 .. 0.61

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.6e-08
    TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllkllt..GllrktsGeilldgrewtrkd....lkkiGsliesPalyenltarenlkv 93 
                  ++ vv++v+++ k  s+ +++GpnGaGkstll++l     +   +G+i ++gr++++ +     +++  l+     +  l+  +n+ +
  MMETSP1174-20130828|11893_1 299 DELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKrdPAMVLRKGSIRVQGRDYSQYHsarwQTSVAELMRPAERFASLSVGDNVAI 386
                  5679*******************************73335666789******999874411113456666666666777777777766 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 8.8
    TIGR03740 144 kllildePtnGldPlGiqelre 165
                   l++ldeP+  +d    + +  
  MMETSP1174-20130828|11893_1 454 VLILLDEPSLHMDVQAEEAFFA 475
                  4666788877777655544444 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00052     0.036      13      47 ..     300     334 ..     290     358 .. 0.82
   2 !   13.8   0.0   4.9e-05    0.0033     417     463 ..     422     470 ..     378     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00052
    TIGR03269  13 levlknisleleeGevlGilGksGaGksvllhllr 47 
                    v+k++ ++ + G +  ++G  GaGks ll++l+
  MMETSP1174-20130828|11893_1 300 ELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILK 334
                  55788888888888888888888888888888887 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4.9e-05
    TIGR03269 417 akeildklpdelseGerhrvalaqvlik..eprivildeptGtmdpitk 463
                  a+ +l k+ d lse e   + la+v+ k  +  +++ldep+  md  ++
  MMETSP1174-20130828|11893_1 422 AETVLAKYHDGLSESEWASLDLARVMFKakDAVLILLDEPSLHMDVQAE 470
                  899***********************87225667889*******97555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.4   1.7e-07   1.1e-05      15     221 ..     302     507 ..     290     517 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.7e-07
    TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmt..letideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphkt..vldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaral..alrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                  v++++ ++ + G   a++Gp G+Gkst+lril       + +Gsi+v+g      +  + +  +++   l +  e+   +    n+    +  v   v +    +    r +  +r v+ll m G      ++   ls  +   + +ar +  a    ++l+de++  +d +  e  ++ lr  +     t+++ t  m+ + + ad v+++d
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYH--SARW-QTSVAELMRPAERFASLSVGDNVAIDYCdpVAVRVGQKEQVAE-ALRIAGAERFVRLLPM-GAETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRT-CISARHTVVIATSSMRVT-QWADTVVYLD 507
                  5567889999999*******************8722445799*****997543333..2222.3344444444444444444444433333113333333333333.3344445678888887.56666777888888888888888887633445556788888888888876666666654.555666888888888865.5788888876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.3e-07   8.8e-06      22      57 ..     301     336 ..     293     498 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.3e-07
    TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyan 57 
                   v+k+v+++++ G ++a+ G+ GaGkstll+ l ++
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRD 336
                  589****************************99875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.3e-07     9e-06       7     161 ..     301     466 ..     296     507 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.3e-07
    TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnr..liePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalea.........lklvdl..eeyedryPdelsGGmqqrvGlaral..aaePdlllmdeafsald 161
                  l v+dv ++ + G i  ++G+ G+Gkstl+r+l r   +   +G i + G d  +   a+     +  +a +++    f   ++ dn+++        +  +ke+  ea         ++l+ +  e    +y d ls      + lar +  a +  l+l+de+   +d
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARW----QTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRVGQKEQVAEAlriagaerfVRLLPMgaETVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMD 466
                  679*******************************944355679*********999999988....778899999999999999999987654333333333444444440000000004555455455667899999999999999999874466777889999866665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.1e-06   0.00014      21     199 ..     297     483 ..     289     520 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.1e-06
    TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllG..lekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigeP....lrhltsldeserkariaellelvelrse.vldklPrqlsGGqlqriniaral..avePklivldeavsnldlvlqasilellkklkqe 199
                  ++ + v+++v ++ + G   a++G  GaGkstl r+l         kG+++ +G+d ++ +++  ++   ++     +  +++     v     +P    + + +++ e+ r a ++++++l+ + +e vl k+   ls      + +ar +  a +  li+lde    +d+    + ++ l+    +
  MMETSP1174-20130828|11893_1 297 RTDELVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQTSVAELM-RPAERFASLSVGDNVAIDYCDPvavrVGQKEQVAEALRIAGAERFVRLLPMGAEtVLAKYHDGLSESEWASLDLARVMfkAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISA 483
                  5667899*****************************97411233469***********998876655444442.222333344333334333344411004456667777777777777777777665246788888888888888888877556667788888887777777777777777665444 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-06   7.1e-05      20      78 ..     302     362 ..     293     503 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1e-06
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnlle..kptsgavivdgkdlttlsnaelv 78 
                   +++v+++   g i  v+g  gagkstl+r +         +g++ v+g+d ++ + a   
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPamVLRKGSIRVQGRDYSQYHSARWQ 362
                  5799**************************9764320033589999999999988776554 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   6.4e-06   0.00043     777     832 ..     301     355 ..     293     511 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.4e-06
    TIGR00956 777 vlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrklds 832
                   ++++v+ + k G++tA++G  GAGk tLl +L  R    v+ +g + v gr+  +
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILK-RDPAMVLRKGSIRVQGRDYSQ 355
                  577999999**********************995.667777888888888877544 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014    0.0093      17      48 ..     303     334 ..     295     354 .. 0.87
   2 ?    4.0   0.0     0.045       3.1     404     474 ..     433     504 ..     365     516 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00014
    TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvls 48 
                  +++++++ + G i ++ G nGaGkstl+++l 
  MMETSP1174-20130828|11893_1 303 VKDVTFHAKGGSITAVVGPNGAGKSTLLRILK 334
                  678999999*********************95 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.045
    TIGR02633 404 lsGGnqqkavlakll.llnprvli.ldeptrGvdvGakyeiyklinq.laqeGvaiivvsselaevlGlsdrvl 474
                  ls  +     la+++   +  vli ldep+  +dv a    +  + + ++++   +i  ss    v   +d v+
  MMETSP1174-20130828|11893_1 433 LSESEWASLDLARVMfKAKDAVLIlLDEPSLHMDVQAEEAFFARLRTcISARHTVVIATSS--MRVTQWADTVV 504
                  45555555556775514556676637***********998886555505555444444444..34555666555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0071      0.49     622     651 ..     302     331 ..     279     352 .. 0.84
   2 !    9.2   0.0   0.00091     0.062     828     911 ..     432     514 ..     397     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0071
    TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLin 651
                   +kd++ + + g +t++ G+ g+GkstL+ 
  MMETSP1174-20130828|11893_1 302 VVKDVTFHAKGGSITAVVGPNGAGKSTLLR 331
                  5799************************85 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00091
    TIGR00630 828 tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlGPeGGekG 911
                   Ls  e   + La+ + k ++   l +lDeP+  + ++  + ++  l+  +++ +tvv+    + v + aD ++ l  +G  +G
  MMETSP1174-20130828|11893_1 432 GLSESEWASLDLARVMFK-AKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYLDHKGTWAG 514
                  577777778888877654.67788999999998777788888999999999999999999999999999999999988776655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.6e-05    0.0011      38      89 ..     301     354 ..     291     467 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.6e-05
    TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnp..vsrGkvlvkdedke 89 
                  l v+d++++ + G i+ ++G  G+Gks+llr + +  +  + +G+++v+  d +
  MMETSP1174-20130828|11893_1 301 LVVKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRDPAmvLRKGSIRVQGRDYS 354
                  6799****************************9986441144699999877754 PP

>> TIGR02924  ICDH_alpha: isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05    0.0013      17     111 ..     400     494 ..     383     514 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.9e-05
    TIGR02924  17 eavllilkeaeaeieietieiGeklykkewssGisesswesikrtkvllkaPittpqGgGhkslnvtlrkklglyanirPcvsyhpvietkypkl 111
                  e v + l+ a+ae  +  + +G +    +++ G+ses w+s+  ++v++ka           sl + ++ +  ++a +r c+s    +    +++
  MMETSP1174-20130828|11893_1 400 EQVAEALRIAGAERFVRLLPMGAETVLAKYHDGLSESEWASLDLARVMFKAKDAVLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSM 494
                  678899999********************************************999999***********************9765555544444 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.5e-05    0.0017       2     134 ..     319     468 ..     318     492 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.5e-05
    TIGR01187   2 LGpsGsGkttlLrllaG..leeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeike......rvkeaLelvqleefak.....rkpsqlsGGqrqrvalaravvkkPk..iLLlDeplsaLDkk 134
                  +Gp G+Gk+tlLr+l       l +G+i ++g d ++  +   + sv  +++    f  ++v +nva         +   ke      r+  a + v+l  +++     ++   ls      + lar + k  +  ++LlDep   +D +
  MMETSP1174-20130828|11893_1 319 VGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSArwQTSVAELMRPAERFASLSVGDNVAIDYCDPVAVRVGQKEqvaealRIAGAERFVRLLPMGAetvlaKYHDGLSESEWASLDLARVMFKAKDavLILLDEPSLHMDVQ 468
                  7**************7522567899*********9987665115789999*****************75544444444444400001166666667888666651122145566888888899999987654332266889987777765 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.8e-05     0.004       1     174 [.     303     493 ..     303     511 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.8e-05
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliag..lekptsgavilegkeitepgpdrmv.....vfqnysllpwltvreniala.vdavlrdlskser....rei..veehielv..glreaadkrpeqlsggmkqrvaiaral.sirpk.lllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  +kdv ++ k g + +++g  g gkstll ++         +g+++++g++ ++    r       +++    +  l+v +n+a+   d v   + ++e+     +i   e  + l+  g ++   k+ + ls      + +ar +   +   l+lldep   +d  + e +  +l + +  ar tv++ t  
  MMETSP1174-20130828|11893_1 303 VKDVTFHAKGGSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDYSQYHSARWQtsvaeLMRPAERFASLSVGDNVAIDyCDPVAVRVGQKEQvaeaLRIagAERFVRLLpmGAETVLAKYHDGLSESEWASLDLARVMfKAKDAvLILLDEPSLHMDVQAEEAFFARL-RTCISARHTVVIATSS 493
                  58999999**********************97511344568********999888877541111134445566677888888764233333333333321100222113344455311334556777888888888888888876333333155679998888888888887776.4455666677776655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011      0.74     951     994 ..     306     353 ..     283     382 .. 0.78
   2 !    6.7   0.0     0.002      0.14    2090    2145 ..     454     509 ..     424     516 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.011
    TIGR01257 951 itfyen..qitaflghngagktttlsiltg..llpptsgtvlvggkdi 994
                  +tf+ +   ita++g ngagk+t l il     +    g++ v g+d 
  MMETSP1174-20130828|11893_1 306 VTFHAKggSITAVVGPNGAGKSTLLRILKRdpAMVLRKGSIRVQGRDY 353
                  5666432279***************99974224555678888888876 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.002
    TIGR01257 2090 plvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvk 2145
                    l+lldep+  md qa   ++  + + i   ++vv+++ sm   +   t + +  k
  MMETSP1174-20130828|11893_1  454 VLILLDEPSLHMDVQAEEAFFARLRTCISARHTVVIATSSMRVTQWADTVVYLDHK 509 
                   699**************************************877666555555555 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.2e-05    0.0028      23      37 ..     313     327 ..     303     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.2e-05
    TIGR02168  23 kgitgiVGPNGcGKS 37 
                  ++it++VGPNG GKS
  MMETSP1174-20130828|11893_1 313 GSITAVVGPNGAGKS 327
                  57************9 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00025     0.017      21      65 ..     306     353 ..     290     374 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00025
    TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaar..lladaGevtyesrsr 65 
                  v+f    G + ++vG  G+Gkstll  l     ++  +G+++ + r+ 
  MMETSP1174-20130828|11893_1 306 VTFhAKGGSITAVVGPNGAGKSTLLRILKRDpaMVLRKGSIRVQGRDY 353
                  7786778999****************9986422667888888888874 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037     0.025     428     457 ..     308     333 ..     305     347 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00037
    TIGR00929 428 fHvrdakevlGhTlIfGptgsGKTvllnfl 457
                  fH++        T+++Gp+g+GK++ll +l
  MMETSP1174-20130828|11893_1 308 FHAKG----GSITAVVGPNGAGKSTLLRIL 333
                  77777....457***************988 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0015       0.1      20      44 ..     306     330 ..     301     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0015
    TIGR00618  20 idftalglklfvicGktGaGKtsLl 44 
                  + f a+g  + ++ G++GaGK++Ll
  MMETSP1174-20130828|11893_1 306 VTFHAKGGSITAVVGPNGAGKSTLL 330
                  5566677799**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 1.47u 0.24s 00:00:01.71 Elapsed: 00:00:00.92
# Mc/sec: 750.33
//
Query:       MMETSP1174-20130828|11897_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1208.90
//
Query:       MMETSP1174-20130828|11894_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|11901_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-58  196.3   0.6    2.6e-58  195.4   0.4    1.4  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    1.3e-28   97.9   0.1    1.9e-28   97.3   0.0    1.2  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.4   1.3e-61   2.6e-58       8     319 ..      25     365 ..      18     366 .. 0.86

  Alignments for each domain:
  == domain 1    score: 195.4 bits;  conditional E-value: 1.3e-61
    TIGR02749   8 apvekdlealtknlkslv............GakhPilsaaaehlfeagGkrlrPaivllvsrataeee..........eltarhrrlaeitelihtaslvhddvvdesdvrrgv....etvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavlse..vdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaP.vlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslev.lpksaskealkelvefvle 319
                  ++v++dl++l++ +ks+v            G+ +P+l+aaa+++fe   +  rP++vll++ra+a+++          e  a+h  laei+e++ ta ++hddv+++ + +       +t + +++++v++laGdfl+a+as  la+l n+ vv++++  +++++ Gei ++ + ++ +l+   y++k   ktasl+++++ + a+l    v+s   ++   +G+++G+a+q+  d + +++ t +l  P+ + +++  +  P +  +  ++p+l+++i + f+e++d+e al+lv+e++++  + ela + ++ al+++++ lp+s++k+ l  + ++v++
  MMETSP1174-20130828|11901_1  25 TLVQSDLRSLKRRIKSIVeknvgsndktkaGSSNPLLQAAAREFFERRERAWRPSVVLLMARALAADDedpskvssedESFAKHLMLAEIVEMMSTAQFIHDDVIEDFQSKETGnvahKTYDAQLGNKVSLLAGDFLLARASVELARLTNVAVVEIMGSSLENMCRGEIMHAQAYLEDKLNSTYYIDKVSLKTASLLSNACLSSALLRGfpVESPQSKAASDFGHNIGIAYQITKDAMAYSTLT-SLEVPSVATMNEVIVGLPpMSLSSAKNPQLHDIIMSGFKEPGDVEDALRLVEEEDGMSMSTELADRYINSALEAIQTsLPESGFKRGLTTMCNYVVQ 365
                  555555555555555554333333333333999******************************99887667766666677789***********************998887650111555566789********************************************************************************972245556778899****************997765.79**********9998751667889**************************************************865****************986 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   9.5e-32   1.9e-28      23     315 ..      53     364 ..      26     368 .. 0.80

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 9.5e-32
    TIGR02748  23 avqaeaevlkeaalellkaGGkrirPvfvllagk.lg..dydldkl........kkv..avalelihmaslvhddviddaelrr.G...ketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivaga..deeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlP..vlyaledealkkklekvleettaeeleelieevkksdaiekalavsdlylkkalelld.elPkseakkalkeiakyig 315
                     +++++l+ aa e+++   +  rP +vll ++ l+  d d +k+        k++  a  +e++  a ++hddvi+d + +  G   ++t  ++ +n++++ +Gd+lla++  +++++++++v +i+ +++ ++c+Gei   +   + + n   y+ ++  kta l++ +c   a+  g   ++ + k+   fg+ +G++yqi+ d + + +t   l  P+   +    v lP   l + ++++l+  + + ++e    ++e  +  v++ d++  +++++d+y++ ale+++ +lP+s  k+ l+ +++y+ 
  MMETSP1174-20130828|11901_1  53 KAGSSNPLLQAAAREFFERRERAWRPSVVLLMARaLAadDEDPSKVssedesfaKHLmlAEIVEMMSTAQFIHDDVIEDFQSKEtGnvaHKTYDAQLGNKVSLLAGDFLLARASVELARLTNVAVVEIMGSSLENMCRGEIMHAQAYLEDKLNSTYYIDKVSLKTASLLSNACLSSALLRGFpvESPQSKAASDFGHNIGIAYQITKDAMAY-STLTSLEVPSVATMNEVIVGLPpmSLSSAKNPQLHDIIMSGFKE--PGDVEDALRLVEEEDGMSMSTELADRYINSALEAIQtSLPESGFKRGLTTMCNYVV 364
                  3347788899999999999999999999988766233222222222111111126651145589999999********9987752333378999***********************************************999888888888899***********************996225667888999****************98.78899****************93334566777777777766655..4678889999999********************99736**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1148.91
//
Query:       MMETSP1174-20130828|11903_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-10   36.8   0.0    5.9e-09   33.5   0.0    2.4  2  TIGR01382 PfpI: intracellular protease, PfpI family
      3e-08   31.4   0.4      2e-07   28.8   0.2    2.3  2  TIGR01383 not_thiJ: DJ-1 family protein


Domain annotation for each model (and alignments):
>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   2.9e-12   5.9e-09      13     109 ..      46     165 ..      40     171 .. 0.80
   2 ?   -0.7   0.0     0.091   1.9e+02     135     168 ..     218     248 ..     188     249 .] 0.68

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 2.9e-12
    TIGR01382  13 eEllePlkalkeaGheVtvvsgkekgeivk.........................ekkgakvtvdatlddvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgpqlLis 109
                  eE  +P+  +k++G eV ++s+k  g  +                          ++  ++v++ a +++   e++d l + GG++       ++ v++ + +++ +gK+vaa Chgp  L++
  MMETSP1174-20130828|11903_1  46 EECATPYLLFKAEGFEVVLASTK--GGPIPidaaslgegfftqaakdfmhdaeamDQMSHSVEL-ANIEGGICEDFDCLYLSGGHGtCTDFVDNPTVKSCIEKMYAAGKVVAADCHGPIALAQ 165
                  57788888899999999888833..332223467788888888888888888755555566665.567777789************889999**************************99986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.091
    TIGR01382 135 yvdirevvvvdanlvtakvpadlpafvseilkll 168
                  +     +++  +nl+t ++p+  +a    ++++l
  MMETSP1174-20130828|11903_1 218 WN---PKAMKSGNLITGQNPQSSEACAGLVIEAL 248
                  22...35678899999999998888776666665 PP

>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.23   4.7e+02     103     116 ..      48      61 ..      40      67 .. 0.83
   2 !   28.8   0.2   9.5e-11     2e-07      61     128 ..     115     187 ..      97     249 .] 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.23
    TIGR01383 103 CaaPivllaaevll 116
                  Ca+P +l++ae+ +
  MMETSP1174-20130828|11903_1  48 CATPYLLFKAEGFE 61 
                  99999999998765 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 9.5e-11
    TIGR01383  61 eeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivllaa.....evllgkkkatcypslk 128
                   e+fD++ L GG    + + d+ +++++++k++++gk+vAA C +Pi+l++      + l+ + ++t++ + +
  MMETSP1174-20130828|11903_1 115 CEDFDCLYLSGGHGTCTDFVDNPTVKSCIEKMYAAGKVVAADCHGPIALAQCvkpdgTALVAGLEVTGFSNSE 187
                  579*********************************************9875111112333344566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 670.72
//
Query:       MMETSP1174-20130828|11906_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 299.98
//
Query:       MMETSP1174-20130828|11904_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-13   48.7   0.0    1.8e-13   47.8   0.0    1.3  1  TIGR00653 GlnA: glutamine synthetase, type I
    4.1e-11   39.9   0.1    6.6e-10   35.9   0.0    2.4  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   8.8e-17   1.8e-13     118     276 ..     206     357 ..     188     370 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 8.8e-17
    TIGR00653 118 gdevyfGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkggYfdvepv.DkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwk.dgenlf 276
                  g   ++G E+EFfl+ ++   ++   ++    +     +++ + g+     + ++ Y+ + +    ak+   e+  +  ++g+ + + H Eva+ q E +  f +++++ D+ v++ +v+  +a++hG+ a    Kp+ + ngsG H + s+    g nl+
  MMETSP1174-20130828|11904_1 206 GLVSNIGLEQEFFLIPRDMYMDRLDLQMTG-RT---IMGKDAPRGQ-----EMCDHYMGPLSFsTPAKEAMAEMQDVCYRMGIPLRTRHREVAPNQYEFAPLFGTVTTQVDQNVVVMQVIEEIAAQHGLAALLQEKPFNNVNGSGKHNNWSIGTkCGTNLL 357
                  556789999999999988877653332222.22...2335555553.....33444554433303467777888899999***********************************************************************9542677776 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   3.2e-13   6.6e-10     111     254 ..     205     361 ..     195     384 .. 0.78
   2 ?    0.8   0.0     0.015        30     320     346 ..     464     491 ..     452     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 3.2e-13
    TIGR03105 111 kgftlktGveceffllrree.........dgklsvaDkaDklakpcYDqra...l.mrrydvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfadda 254
                  +g+  ++G+e effl+ r+           g++ +  +a + ++ c  + +   + +   + ++e+ +   ++G+ l +   e a  q+e+   +  + t  D+ +++  +++eia+++gl a +  kPf++  G+G h + s+  + g+nl +  +
  MMETSP1174-20130828|11904_1 205 EGLVSNIGLEQEFFLIPRDMymdrldlqmTGRTIMGKDAPRGQEMCDHYMGplsFsTPAKEAMAEMQDVCYRMGIPLRTRHREVAPNQYEFAPLFGTVTTQVDQNVVVMQVIEEIAAQHGLAALLQEKPFNNVNGSGKHNNWSIGTKCGTNLLNVGQ 361
                  5777888999999988776322111111134444555555566667666542112134567899999999999*99999999****************************************************************999**987655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.015
    TIGR03105 320 vRiP.dagRlelRlaDgaanpYlvsaav 346
                     P +++R+e+R   +a+n  lv++++
  MMETSP1174-20130828|11904_1 464 SPFPyGGHRFEFRAVGSAVNVSLVNTVL 491
                  44566799*************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.61
# Mc/sec: 1501.65
//
Query:       MMETSP1174-20130828|11907_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-41  140.4   0.0    1.8e-41  140.3   0.0    1.0  1  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase
    9.8e-05   20.4   0.0    0.00014   19.9   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    0.00049   17.0   0.0    0.00055   16.9   0.0    1.1  1  TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase
    0.00054   17.3   0.0     0.0013   16.0   0.0    1.6  2  TIGR03827 GNAT_ablB: putative beta-lysine N-acetyltransferase
  ------ inclusion threshold ------
       0.01   13.3   0.0      0.016   12.6   0.0    1.2  1  TIGR03968 mycofact_TetR: mycofactocin system transcriptional regulator
      0.011   12.9   0.0      0.029   11.5   0.0    1.7  2  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   2.7e-44   1.8e-41     285     429 .]       1     142 [.       1     142 [. 0.97

  Alignments for each domain:
  == domain 1    score: 140.3 bits;  conditional E-value: 2.7e-44
    TIGR01890 285 ireatiddvggilelirPleeqGilvrrsrellereieefsviekdGliigcaalypyaeeevgelaclavsPeardggrGerllkhiedrarqvGlkrlfvlttrtehWfrerGfaeasvdelPearrklynyqrrskilvkkl 429
                  +r+a+ +dvg ileli+Pl + G+l+ r+r +l ++i++  v  +d   i+c  l py  +  +e++clav+P +r+ grG+++l+ +e  a + G++++f+ltt+t hWf+erGf e++vd+lP +rr  yn+qr+ski++k+l
  MMETSP1174-20130828|11907_1   1 MRHAEDEDVGAILELIQPLIAAGMLLSRNRAQLLKDIKHTYVNVRDEAPIACGMLVPYGPS-HAEISCLAVKPRYRGNGRGDNMLTFLERVAMSKGIHTVFILTTQTMHWFTERGFDEVTVDALPDSRR--YNWQRKSKIFMKHL 142
                  599*******************************************************987.58**************************************************************997..************87 PP

>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     2e-07   0.00014      30      93 ..      37     100 ..      20     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2e-07
    TIGR01575  30 ekaeyllaeeggkvvGyivvqivldeaeilniavkpeyqgqGiGraLlkelikeakergvkeif 93 
                   k++y+ +++++ ++  ++v      aei+ +avkp y+g+G G ++l  l++ a ++g++++f
  MMETSP1174-20130828|11907_1  37 IKHTYVNVRDEAPIACGMLVPYGPSHAEISCLAVKPRYRGNGRGDNMLTFLERVAMSKGIHTVF 100
                  45567777766666666678889999*********************************99988 PP

>> TIGR00124  cit_ly_ligase: [citrate (pro-3S)-lyase] ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     8e-07   0.00055      22     108 ..      29     119 ..      19     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8e-07
    TIGR00124  22 neLsldedvevaivveedeklvgcGgia..G...nvikcvaideslrGeglalqLlteLvnlayelkrshlfiftkpeyaalfksiGfktla 108
                  n  +l +d++ + v  +de  ++cG +   G     i c+a+++  rG+g   ++lt L+ +a+ ++    fi t       f + Gf  ++
  MMETSP1174-20130828|11907_1  29 NRAQLLKDIKHTYVNVRDEAPIACGMLVpyGpshAEISCLAVKPRYRGNGRGDNMLTFLERVAMSKGIHTVFILTTQ-TMHWFTERGFDEVT 119
                  55566678999999999********986332222679*************************************965.45789999998765 PP

>> TIGR03827  GNAT_ablB: putative beta-lysine N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-06    0.0013     178     224 ..      57     103 ..      32     108 .. 0.84
   2 ?   -1.8   0.0      0.55   3.7e+02      72      90 ..     133     151 ..     124     155 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.9e-06
    TIGR03827 178 dleeknaElTdfatlpeyrgkglakeLlaelEkelkekgiktaytia 224
                      ++aE+   a++p yrg+g   ++l+ lE   ++kgi+t++ ++
  MMETSP1174-20130828|11907_1  57 PYGPSHAEISCLAVKPRYRGNGRGDNMLTFLERVAMSKGIHTVFILT 103
                  566789*************************************9775 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.55
    TIGR03827  72 kdavflskyleesRkksse 90 
                  ++  ++ k+le+sR+++se
  MMETSP1174-20130828|11907_1 133 RKSKIFMKHLESSRQIDSE 151
                  4567788888888888765 PP

>> TIGR03968  mycofact_TetR: mycofactocin system transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.016      14      35 ..     102     123 ..      92     127 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
    TIGR03968  14 iekvalelFaerGfeettvddi 35 
                  +++ +++ F+erGf+e+tvd +
  MMETSP1174-20130828|11907_1 102 LTTQTMHWFTERGFDEVTVDAL 123
                  5678999*************86 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05     0.029      45      96 ..      36      87 ..       4     101 .. 0.80
   2 ?   -0.9   0.0      0.26   1.8e+02     174     205 ..     108     141 ..      95     148 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.2e-05
    TIGR03448 45 rtehllvsdsdkaivGyaalseardadsemaElvvhPaaRrrGigkalvral 96
                   +h+ v+ +d+a +    l++   +++e + l+v+P++R++G g ++++ l
  MMETSP1174-20130828|11907_1 36 DIKHTYVNVRDEAPIACGMLVPYGPSHAEISCLAVKPRYRGNGRGDNMLTFL 87
                 44566666666666667777898899********************998754 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.26
    TIGR03448 174 awHPEqG..gwteadlaerraeaWfdpaglllav 205
                  +w  E G   +t + l + r  +W +++ +++  
  MMETSP1174-20130828|11907_1 108 HWFTERGfdEVTVDALPDSRRYNWQRKSKIFMKH 141
                  5555555334666777777777787777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 551.65
//
Query:       MMETSP1174-20130828|11910_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   23.3   0.9      0.013   12.5   0.0    2.7  3  TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02027  rpoA: DNA-directed RNA polymerase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.2e-06     0.013      12      41 ..      61      90 ..      59     101 .. 0.86
   2 ?   -1.7   0.0     0.069   2.8e+02     151     174 ..     211     235 ..     177     239 .. 0.79
   3 !    8.3   0.2   6.2e-05      0.26     167     234 ..     287     352 ..     285     359 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.2e-06
    TIGR02027 12 GfgtTlGnaLRRvLLssiegaaitavkieg 41
                 G    ++n+LRR++L++++ +ai +v i+ 
  MMETSP1174-20130828|11910_1 61 GVDASIANSLRRIMLAEVPTMAIEQVYIQM 90
                 666789******************998875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.069
    TIGR02027 151 aifsPvkkvnYev.envrvgqktdy 174
                  a fsPv   +Y+    ++v+q+ + 
  MMETSP1174-20130828|11910_1 211 AKFSPVATASYRLlPRIKVKQSAED 235
                  6799999999985246677766655 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 6.2e-05
    TIGR02027 167 rvgqktdydkLileieTdgsispkeAlaeAakilkehlevfveleeeeeeleeekeeekeek.ekskll 234
                  rv  + + d+ ++++e  g +sp+e ++ A k lke+   f+e+ +e  +      +e ee+ + +++ 
  MMETSP1174-20130828|11910_1 287 RVTLEREADHFMFKVEPVGMLSPTEIVKGALKKLKEKCVSFEEALDEVDDSA---MDEDEESlSGDEDE 352
                  56667889*****************************999999876555544...33333322333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1079.91
//
Query:       MMETSP1174-20130828|11919_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|11917_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 460.08
//
Query:       MMETSP1174-20130828|11921_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1174-20130828|11923_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|11925_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 842.40
//
Query:       MMETSP1174-20130828|11920_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1295.89
//
Query:       MMETSP1174-20130828|11929_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 579.60
//
Query:       MMETSP1174-20130828|11915_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-64  216.7   0.4    1.1e-64  216.7   0.3    2.9  3  TIGR02350 prok_dnaK: chaperone protein DnaK
    3.1e-52  175.7   0.7    6.8e-52  174.6   0.5    1.5  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
     0.0022   15.0   0.0     0.0049   13.8   0.0    1.5  1  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.7   0.3     8e-68   1.1e-64       2     375 ..      34     422 ..      33     444 .. 0.90
   2 ?   -2.0   1.3      0.13   1.8e+02     460     540 ..     539     613 ..     521     628 .. 0.62
   3 !    7.3   2.1   0.00021      0.28     487     574 ..     626     717 ..     616     736 .. 0.74

  Alignments for each domain:
  == domain 1    score: 216.7 bits;  conditional E-value: 8e-68
    TIGR02350   2 iiGidLGttnsvvavleggep.vvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkleeveee.akkvpykvveaen....evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke.kkdekilvfdlGGGtfdvsilelg............dgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkg 375
                  +iGid+G t   va+++ g p ++++n+  +r t  +++f   ger  G+ a   +   p++++++  r++Gr++e+ + + + ++ y++   +n      ++++ d +y+pee++a++L + k+  +a+ G+++++ v+tvP+++   +r a k+a +ia l+vl +i+e taaaL yG d+  ++++++l f++G     v+i   g             g+f+v + a d +LGG+dfd k+ +y+a+ef+k++g ++++   a+ +l+  a k+k  Ls+++e  +++  +  d    +++++++trakfe+l +dl+ r++ p+++al++a+l++ ++d v l GG  riP++q ++ +++  k+    +n de++a+Gaa  ++ l+ 
  MMETSP1174-20130828|11915_1  34 VIGIDIGSTFMKVALVQLGVPlEIVTNTISKRKTEVCITFDR-GERYFGSDAYGLMSRKPQSSFTKFGRMLGRSMEHATVKdILSQYYSMDMYQNdtrgGLSIKLGDADYSPEELTAMLLGHAKDFTKAFGGKEIRDCVLTVPSFYTFHERLALKNAAEIAKLKVLALIDENTAAALQYGKDRVfEENHTVLYFNMGAASTQVTITTYGsyvgkegyknktIGTFDVIAKAWDENLGGTDFDLKLTNYFADEFNKKSGGEIRDVPRAMAKLRAQATKSKQVLSANSEIPVKINSLHND----VDFTVHITRAKFEQLSQDLFARVTLPISEALAQANLTVADLDGVELLGGGMRIPKIQSILGDFFVdKQLGVHLNADEAMALGAAFHAANLST 422
                  8***************9888847999**************76.5*******************************9665540444444443333311235679999*****************************************************************************8688999***************9988666675555433359************************************************************99999998877666....5677778*****************************************************998765999****************9998876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.13
    TIGR02350 460 vpqievtfdidanGilsvsakdkatgkeqsititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaekt 540
                  +p+i +tf ++  G+   +a+  at  e+     a+++ s ++ ++ v+e+ +n+  +++  e+  + n++ s + +a k+
  MMETSP1174-20130828|11915_1 539 KPKIHLTFKLEGRGVTLSKAE--ATV-EEV---VAATNESASDTNKTVNESASNETGNETGAEDNATANTSKSKTEKASKK 613
                  688888888888887655553..333.333...344444566677777777777777666666666666666555555444 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00021
    TIGR02350 487 eqsititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagd...kle.eeekekiekaveelkealkeedvee 574
                  eq+ t+ ++   s  e++  +++  + ++ d +++e+ ea+n+++ ++y++++++ ++++   k++ ee++e++ + v+e  + l++e  +e
  MMETSP1174-20130828|11915_1 626 EQDFTLPETKARSPVEVDTSLEKLANLNKLDDERHEKEEAKNTLEGFLYATRNRIYDEDElaaKVStEEQREELLTLVSESADWLDDEGFDE 717
                  6777777788888889999998888888899999*********************9887621133314556677777777777776665554 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.5     5e-55   6.8e-52       1     364 [.      34     422 ..      34     436 .. 0.86

  Alignments for each domain:
  == domain 1    score: 174.6 bits;  conditional E-value: 5e-55
    TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsledvkke.aeelpyel...edakgemvrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk..aseglyavYDLGGGtFDvsiLkl............ekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepl.tdldPdevvAlGAalqadlLak 364
                  ++GiD+G t   va v+ g++  +  ++ +     v    + g+   G++a   + ++p+++ +   R++Grs+e+   +   ++ y++   ++++++ + +k  + + +P e++a +L + k  ++   gke++ +v+tvP ++   +r a k+Aa++a+l+vl L++e taAA+ YG d+  +++++++ +++G     v i               + G F+v+a + d +LGG DfD +l++++     kk+g e +  +  +++l ++a + k+ L++++e+ v+++   ++ d++++++r+++e+l ++l  + + ++++al +a+l+v+++++v l GG  r+p++++ + ++F  + l ++l+ de +AlGAa++a  L+ 
  MMETSP1174-20130828|11915_1  34 VIGIDIGSTFMKVALVQLGVPLEIVTNTISKRKTEVCITFDRGERYFGSDAYGLMSRKPQSSFTKFGRMLGRSMEHATVKdILSQYYSMdmyQNDTRGGLSIKLGDADYSPEELTAMLLGHAKDFTKAFGGKEIRDCVLTVPSFYTFHERLALKNAAEIAKLKVLALIDENTAAALQYGKDRvfEENHTVLYFNMGAASTQVTITTYgsyvgkegyknkTIGTFDVIAKAWDENLGGTDFDLKLTNYFAdefnKKSGGEIRDVPRAMAKLRAQATKSKQVLSANSEIPVKINSlhNDVDFTVHITRAKFEQLSQDLFARVTLPISEALAQANLTVADLDGVELLGGGMRIPKIQSILGDFFVDKQLgVHLNADEAMALGAAFHAANLST 422
                  59***************99986666555555555555555667******************************9987543044556666333455566899999999***************************************************************************866666677789********998642222322222224599**********************999966656666776667788889999999***********99999765688999*************************************************************99888579***************99975 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.6e-06    0.0049     100     172 ..     169     243 ..     145     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.6e-06
    TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaai..GadlPveeptgsmvvdiGGGttevavislgGi 172
                    +++vPs  t  er a+k++a+ a  +   li+e  aaa+  G d   ee  + +  ++G   t+v++ + g  
  MMETSP1174-20130828|11915_1 169 DCVLTVPSFYTFHERLALKNAAEIAKLKVLALIDENTAAALqyGKDRVFEENHTVLYFNMGAASTQVTITTYGSY 243
                  37899***********************************75588888999999999**********99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.77
# Mc/sec: 1520.45
//
Query:       MMETSP1174-20130828|11926_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.0   0.0      0.041   11.3   0.0    1.2  1  TIGR00281 TIGR00281: segregation and condensation protein B


Domain annotation for each model (and alignments):
>> TIGR00281  TIGR00281: segregation and condensation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     1e-05     0.041       7      73 ..     157     225 ..     154     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1e-05
    TIGR00281   7 ealLfvsgekGvtlreLlkilkkekveklnai.lelledklsrDte.GiEiikvgesyslstkkefkdy 73 
                  e +L++ +++ + lr++ ++l+++k +k  ++   ++   +++D   G+E++ ++ +  ++tk++++d+
  MMETSP1174-20130828|11926_1 157 EYILYTESDQVIYLRDIGRLLHEAKKPKTLVLpHRQMPVPTRDDFFeGVEMVGYARKTAMKTKEHVEDL 225
                  679*******************9999887766245677777777657****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1086.08
//
Query:       MMETSP1174-20130828|11928_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|11931_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   29.2   0.1    6.7e-07   27.2   0.1    1.9  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.6e-10   6.7e-07      28     122 ..      76     168 ..      63     172 .] 0.70

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.6e-10
    TIGR00357  28 ftneykknkeeGiyvditsgeplf.....ssedkf..ds.gcGWPsftk.piseeavkyekdeslgmirtevrskradahlGhvfddGPektGkryCinsaalk 122
                  f +e ++   e ++ d +sg+plf      s d f  +s   GWPsf +  + e+ v+  + +       e     + +hlGh +   P++tG+ryCin +++ 
  MMETSP1174-20130828|11931_1  76 FLSEIDTAGGEMTFYDTVSGKPLFvaprgRSWDDFlnESrAHGWPSFRDeEVIENDVRVLD-N------GEA-VSLCGTHLGHNL---PDRTGNRYCINLVSVA 168
                  5566666666778899999****9444443677884434246*****85245566665433.2......232.4579******77...779********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1174-20130828|11930_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.5   0.0       0.21    8.5   0.0    2.6  2  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0     5e-05      0.21      42     126 ..     139     215 ..     133     219 .. 0.76
   2 !    3.8   0.1    0.0014       5.8      55     131 ..     199     277 ..     195     295 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5e-05
    TIGR03547  42 gWkkiaefpgaareqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgllGasaveleegkililGG 126
                   W+++a  p  +r +  +a+v+g ly  gG + +      + l +v++yd  +++W++ +    v  +Ga ++ + +g i++ GG
  MMETSP1174-20130828|11930_1 139 RWRSVAPLPH-PRLDHCSAFVGGALYTIGGCDAS-----YKPLGSVHRYDVMTDTWTECAPLNEVR-TGA-CCGVVGGGIVVAGG 215
                  5888888885.67788899***********9877.....677899***********9865444332.343.44466667777776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0014
    TIGR03547  55 eqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWeklet.rsPvg......llGasavelee.gkililGGvnkei 131
                   +a + vv+g + v gG            l++v +ydp++n+We  e  +s +g      l Ga+++e++  +++++lGGv  ++
  MMETSP1174-20130828|11930_1 199 TGACCGVVGGGIVVAGGWCGG------SHLSSVEFYDPQTNTWEFREPmSSARGwanacvLPGAKGFEIKStDRLCMLGGVADDV 277
                  566666666666666666544......3467788999999999743320222222222227789999887515688889987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.86
# Mc/sec: 679.90
//
Query:       MMETSP1174-20130828|11932_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1174-20130828|11934_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-13   46.5   0.1    1.4e-12   45.5   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    3.8e-12   44.3   0.1    7.8e-12   43.3   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    8.8e-10   36.5   0.0    1.3e-09   36.0   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00048   17.6   0.0     0.0018   15.8   0.0    1.9  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0031   14.7   0.0     0.0046   14.2   0.0    1.1  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
  ------ inclusion threshold ------
      0.016   11.7   0.0      0.022   11.2   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   2.1e-15   1.4e-12      12      97 ..      85     170 ..      75     174 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2.1e-15
    TIGR01068  12 ssdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfk.ngkevkrvvGakpkaalkeli 97 
                  ++++++ + fwA+WC +Ck+l P  + +a+++  + ++ +ln +e+++  +++g++++P + ++  +g++ + + G k+ + l++ +
  MMETSP1174-20130828|11934_1  85 RDNEVIAIKFWAPWCRACKALEPKYARIAQQYP-NFRFKQLNWEENRAFCKEIGVAALPLVRMYSsEGQVESFTCGPKKVELLRSNL 170
                  4567999**********************9999.5************************9977761566666667776666666555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.1e-14   7.8e-12       9      89 ..      82     157 ..      75     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.1e-14
    TIGR01126   9 lvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdye 89 
                  + + +n+++ ++f+aPWC  Ck+l+P+y ++a+++ +        +++ +++++ +++++v + P +++++++ +  ++++
  MMETSP1174-20130828|11934_1  82 ANIRDNEVIAIKFWAPWCRACKALEPKYARIAQQYPN----FRFKQLNWEENRAFCKEIGVAALPLVRMYSSEGQ-VESFT 157
                  445589999*************************995....7899***********************9999886.44444 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.9e-12   1.3e-09      14      99 ..      83     165 ..      72     233 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.9e-12
    TIGR01130  14 likenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYn.GpReaeg 99 
                   i++ne++ ++F+APWC  Ck+L+P+Y++ A+    + p+    +    e++  +++ gv   P ++++++  +++ ++ Gp++ e 
  MMETSP1174-20130828|11934_1  83 NIRDNEVIAIKFWAPWCRACKALEPKYARIAQ----QYPNFRFKQLNWEENRAFCKEIGVAALPLVRMYSSEGQVESFTcGPKKVEL 165
                  5899***********************98776....56778899*************************988777777646666554 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.6e-06    0.0018      51      91 ..      75     115 ..      42     137 .. 0.76
   2 ?   -2.0   0.0      0.73     5e+02     140     154 ..     528     542 ..     523     547 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.6e-06
    TIGR00385  51 kvqlltaevlkkgklvLlnvwasWCptCraehplLkelake 91 
                    +++++  ++  +++ + +wa WC  C+a  p   ++a++
  MMETSP1174-20130828|11934_1  75 FRKTVDPANIRDNEVIAIKFWAPWCRACKALEPKYARIAQQ 115
                  4578899999999*****************99999999987 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.73
    TIGR00385 140 etflvdgnGviryrh 154
                  e f +d++G i y+ 
  MMETSP1174-20130828|11934_1 528 EEFGMDEDGHIDYKA 542
                  7899*********95 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.7e-06    0.0046       7      96 ..     220     313 ..     210     325 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.7e-06
    TIGR03896   7 vsesreiaaettLieeGkaaddLfilldGaitvtikqeeddaltrav...elaeLsrGelvGemslleerppvatikav.eksrllsipveeLa 96 
                  ++++ + a++ +++e+G     +++ll+G + v  k   +d   r+     + +L +G+  Ge +l+  +p   +i a+ ++ + l + +++L+
  MMETSP1174-20130828|11934_1 220 NATTLNYADGDVIMEQGDYGHRFWVLLEGEVDVFKKSGYGDIADRTPwgiPVNSLYPGQYFGEHALIAGQPRWCSIVAGsPNVQCLVLEKSALQ 313
                  5666677888899999999999999999999999999998888776444499999999999999999999999999885367777777777776 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05     0.022     374     400 ..      89     115 ..      56     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
    TIGR00424 374 awlvvlyapwcpfcqameasyvelaek 400
                     + ++apwc+ c+a+e  y  +a++
  MMETSP1174-20130828|11934_1  89 VIAIKFWAPWCRACKALEPKYARIAQQ 115
                  4456689***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.70
# Mc/sec: 1038.94
//
Query:       MMETSP1174-20130828|11936_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.49
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|11941_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|11939_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.77
# Mc/sec: 968.49
//
Query:       MMETSP1174-20130828|11944_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1305.62
//
Query:       MMETSP1174-20130828|11949_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|11950_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 775.94
//
Query:       MMETSP1174-20130828|11946_1  [L=1236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.16s 00:00:00.87 Elapsed: 00:00:00.60
# Mc/sec: 2718.98
//
Query:       MMETSP1174-20130828|11958_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.65
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|11956_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-97  322.3   0.5    9.6e-97  321.2   0.0    1.8  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    6.9e-56  188.0   0.0      1e-55  187.5   0.0    1.2  1  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
    3.8e-06   24.4   0.0    8.3e-06   23.2   0.0    1.5  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
    2.7e-05   21.9   0.0    5.6e-05   20.9   0.0    1.5  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    4.2e-05   21.7   0.1    0.00017   19.7   0.0    2.0  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.2   0.0   1.2e-99   9.6e-97       1     264 []     215     490 ..     215     490 .. 0.98
   2 ?   -2.2   0.3      0.52   4.2e+02     211     256 ..     680     723 ..     638     725 .. 0.64

  Alignments for each domain:
  == domain 1    score: 321.2 bits;  conditional E-value: 1.2e-99
    TIGR00446   1 iRvntLkievedllerleergvklkkteeegaf..evkesalsigatpeyllGlyllqeassmlPvlalepeekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvlnvavinvDgRkfgavvlkfDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkk.....gGvlvYstCsleveeneevvdyllrkrkdvvev..lalgdealtankak...eevkkalrvyPqsedveGFFvaklrk 264
                  iR+ntLk++++dl+e l +rgv+l+++ ++ ++  ++ es ++igatpeyl+G+y++q+assm Pv+al+p++ ervlD++aaPGgkt ++++l+kn+G+i+an+++k+R k+  an++RlGv n +v+  +g+ f++v+  fDr+LlDaPCsg G+  +d+s+k +r+ +d+ ++++lqkeLllaaid++       gGv+vYstCs++v ene vvdy+l++r    +   l+ g + lt ++ +   + +  ++r+yP+ ++++GFFvak++k
  MMETSP1174-20130828|11956_1 215 IRTNTLKTRRKDLAEALIKRGVQLEPLASWSKVglKILESSVPIGATPEYLSGHYMIQAASSMCPVMALDPQPGERVLDMSAAPGGKTSYVAQLMKNQGSIIANDLKKERQKSTTANLQRLGVRNSIVCCHNGKAFPQVMGGFDRVLLDAPCSGLGIASRDQSVKIQRTVKDVEKMAHLQKELLLAAIDSVSAtskngGGVVVYSTCSVTVHENELVVDYALKRRCVRLLQtgLEHGRQGLTRFNRHrfdPAMALTRRFYPHVHNMDGFFVAKFQK 490
                  8*******************************999************************************************************************************************************************************************************98899999***********************999877777789999999999888778899**********************98 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.52
    TIGR00446 211 vdyllrkrkdvvevlalgdealtankakeevkkalrvyPqsedveG 256
                  v+   + r ++  ++a g+   ++ k+k +vkk  +  P +e ++G
  MMETSP1174-20130828|11956_1 680 VKKTVEDRSNE-DEIASGKVKSGSVKSK-SVKKKTKEEPATESTDG 723
                  33333333332.3366677777776666.66666666666666665 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.0   1.2e-58     1e-55     130     436 ..     169     491 ..     144     492 .. 0.82

  Alignments for each domain:
  == domain 1    score: 187.5 bits;  conditional E-value: 1.2e-58
    TIGR00563 130 eleaevrklaeeyshPeWlvklkkaaygkaeaesiveannqkPkltLRvnslkasreelldllaeeGvegeksd..aedavk.lekpiavtklpgfeeGwvtvqDasaqlvatlLePkneetilDvCaaPGGktthilelakdqaqvvalDleehrlkrvkenleRLgltiikveekdadkagekeevekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiLkaiaplv....kk.gGtLvYstCtllpeeneeqikaF...........laeledlplekrlpekvsesvssgglqilPhaeegDGFfiaklkkk 436
                   +e+    l+e y +   l +l+      ae+ + +ea   + +l +R n+lk+ r++l++ l ++Gv+ e+ +   +  +k le ++++++ p +  G + +q as++  + +L+P+++e +lD+ aaPGGkt++++ l+k+q++++a Dl++ r k  + nl+RLg++  +v   + +++   + ++ fDR+LlDaPCs+lG+  R+  +k +r+ +d+ ++++lqke+L a  + v    k+ gG++vYstC++  +ene +++               e+    l  r  ++  +   + + ++ Ph ++ DGFf+ak++k 
  MMETSP1174-20130828|11956_1 169 YVEQLALDLTEYYGYLRELTDLFLGILSPAECVEFMEASESPRPLVIRTNTLKTRRKDLAEALIKRGVQLEPLAswSKVGLKiLESSVPIGATPEYLSGHYMIQAASSMCPVMALDPQPGERVLDMSAAPGGKTSYVAQLMKNQGSIIANDLKKERQKSTTANLQRLGVRNSIV--CCHNGKAFPQVMGGFDRVLLDAPCSGLGIASRDQSVKIQRTVKDVEKMAHLQKELLLAAIDSVsatsKNgGGVVVYSTCSVTVHENELVVDYAlkrrcvrllqtGLEHGRQGL-TRFNRHRFDPAMALTRRFYPHVHNMDGFFVAKFQKY 491
                  5555555556666666666666666667777888999999999****************************99843333444367899**********************************************************************************7777..6666666666779*****************************************99877666633334436899***************987656666555322222222234.45555566666788999****************995 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     1e-08   8.3e-06      31      74 ..     286     332 ..     283     405 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1e-08
    TIGR00438  31 kkGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk...pienv 74 
                  ++G++vld+ aaPGG + ++++ + ++G +ia dl++        n+
  MMETSP1174-20130828|11956_1 286 QPGERVLDMSAAPGGKTSYVAQLMKNQGSIIANDLKKERqksTTANL 332
                  589********************************986632333343 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.9e-08   5.6e-05      59     159 ..     264     369 ..     252     399 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 6.9e-08
    TIGR00080  59 tisaphmv...akmlelLel..kagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegDGrkGfeekaPydailvtaaskei 159
                  ++s  +m+   + m+  + l  ++g++vL++ +  G ++  +a+l++++g +++ +  +e ++ +  +l++L+  n iv   +G+   +    +d++l+ a   ++
  MMETSP1174-20130828|11956_1 264 YLSGHYMIqaaSSMCPVMALdpQPGERVLDMSAAPGGKTSYVAQLMKNQGSIIANDLKKERQKSTTANLQRLGVRNSIVCCHNGKAFPQVMGGFDRVLLDAPCSGL 369
                  66666665211456766665115789**********************************************************999899999***9999876665 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       4.7   3.9e+03      73      93 ..      98     117 ..      92     119 .. 0.65
   2 !   19.7   0.0     2e-07   0.00017      13      77 ..     281     346 ..     276     365 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 4.7
    TIGR02469  73 ivegdapkaeedsleeadavf 93 
                  i e+d++ ++ +++ee+d+++
  MMETSP1174-20130828|11956_1  98 IEEEDMQ-IDREADEEMDRIV 117
                  4455544.6666688999986 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2e-07
    TIGR02469  13 akLrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieivegd 77 
                   +L +++g+++lD  a  G  t  +a+l+++ g+++a + ++e+ +++++Nl+r+gv+n  +   +
  MMETSP1174-20130828|11956_1 281 MALDPQPGERVLDMSAAPGGKTSYVAQLMKNqGSIIANDLKKERQKSTTANLQRLGVRNSIVCCHN 346
                  5799***************************************************99997776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.16s 00:00:00.92 Elapsed: 00:00:00.94
# Mc/sec: 1032.04
//
Query:       MMETSP1174-20130828|11957_1  [L=1273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.16s 00:00:00.89 Elapsed: 00:00:00.65
# Mc/sec: 2584.96
//
Query:       MMETSP1174-20130828|11961_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|11959_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1140.52
//
Query:       MMETSP1174-20130828|11962_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.67
# Mc/sec: 833.30
//
Query:       MMETSP1174-20130828|11963_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 1425.48
//
Query:       MMETSP1174-20130828|11965_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 955.60
//
Query:       MMETSP1174-20130828|11960_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-181  600.6   0.0   4.5e-181  600.4   0.0    1.0  1  TIGR00457 asnS: asparagine--tRNA ligase
    8.9e-56  187.5   0.1    2.2e-42  143.4   0.0    2.0  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    9.4e-30  101.3   0.0      6e-15   52.4   0.0    2.3  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.8e-19   67.6   0.0    2.3e-13   47.4   0.0    2.3  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    4.4e-09   34.0   0.0    1.1e-08   32.7   0.0    1.6  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
     0.0092   13.2   0.0       0.33    8.1   0.0    2.4  2  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  600.4   0.0  6.6e-184  4.5e-181       4     455 .]      30     498 .]      27     498 .] 0.97

  Alignments for each domain:
  == domain 1    score: 600.4 bits;  conditional E-value: 6.6e-184
    TIGR00457   4 ikdlleqvk.kavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt............eg.vdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesda..kkkfeledl.wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesikf 455
                  ++++l+ ++ + v+++v+++gWv+t R++k +aF+e++DGss   lqav + ++ e+ ++ +k+l+tg+svs++g ++esp+k+q++Elk++++evvg+ + ++yplqkk+hsleflre+ahLr Rt+t+ Av++vRs+l++a+heyfq+ gf  +++P++t+sdcEGage+F+v+t            +g vd+++dffgk ayLtvsgql++E++a al++vyt+gptFRAE+s+t+RHl+Ef miEpE+aF++l++ ++ +e+++k+++++ l ++ ++l+f+++  +k+ i++l++++++ far+ Y +Ai++L+++ +   +k+ ++d+ +G+dl+tehEr l+e++f + +fv  yP+ ikaFYm+ n+d++tvaa+DllvP++GE+iGGs+Re++l +L++++ e +l++e+++WyldlR+yGsvphsG+GlG+eRlv y+t +enirdai +pR +++++f
  MMETSP1174-20130828|11960_1  30 VREILNAPEdEIVGKDVTIKGWVRTLRAQKTLAFIEVNDGSSRFGLQAVCEASNLENFDEVVKELSTGASVSIQGRLIESPAKGQKYELKATHVEVVGTCKGKEYPLQKKRHSLEFLREIAHLRARTNTIAAVARVRSVLAFATHEYFQDLGFHFLQSPLITASDCEGAGEMFRVTTlpsevakipttdDGmVDYKEDFFGKAAYLTVSGQLSAETYASALGDVYTFGPTFRAENSQTTRHLAEFHMIEPEIAFCDLDQSMDNAENFVKFVVSQALAKCRDDLDFFNQFYDKSLIERLQRVVNEPFARVSYREAISLLQTEISkdPSKWSFPDVvFGTDLQTEHERWLSETHFGTATFVHGYPRGIKAFYMRDNEDGETVAAMDLLVPGVGELIGGSQREERLSVLQDKMAELNLNEEDYWWYLDLRRYGSVPHSGYGLGFERLVCYVTATENIRDAIAYPRYPGHAEF 498
                  66777766416799**************************************9888999********************************************************************************************************************************97667******************************************************************************************************************************99755447899***999********************************************************************************************************************************998876 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.6e-14   1.1e-11       8     177 ..      39     207 ..      34     213 .. 0.87
   2 !  143.4   0.0   3.2e-45   2.2e-42     171     422 ..     223     492 ..     210     495 .. 0.87

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.6e-14
    TIGR00458   8 eekdgkevllrgwvheirdlGalifvllrdregl..iqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneak.eplPldleekveaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf 177
                  +e  gk+v+++gwv  +r++ +l+f+ + d  +   +q + ++  + +++ +++k+l +   v ++G++ e+ +  q +e+  +++ev+ ++k +  Pl+ +      l+   +   l  r+ ++ a+ ++rs +  +  e++++ gf  +++P + as  eG  e+f +t +
  MMETSP1174-20130828|11960_1  39 DEIVGKDVTIKGWVRTLRAQKTLAFIEVNDGSSRfgLQAVCEASNL-ENFDEVVKELSTGASVSIQGRLIESPAKGQKYELKATHVEVVGTCKgKEYPLQKKR---HSLEFLREIAHLRARTNTIAAVARVRSVLAFATHEYFQDLGFHFLQSPLITASDCEGAGEMFRVTTL 207
                  56779*************************9997224555555554.57778899**********************************99984678987554...45677778888999**************************************************965 PP

  == domain 2    score: 143.4 bits;  conditional E-value: 3.2e-45
    TIGR00458 171 lfeityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk.........elevlevklevpeeklerltydeaieilrakGk.........eikdgedlsteaekllGe.kmdglyfitdfPteikPfytmPdednPeisksfdllyrdl.eissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrd 422
                   ++  +f + a+l+ s ql      a+ l  vy  +P frae+++t+rhl+e+  i+ e+af d ++ +d  e++v++v+++   k+++         + ++ e+   v +e++ r+ y eai +l+++           ++  g dl te e+ l e ++++  f+  +P  ik fy m d+++ e+  + dll+ +  e+  G+qr     +l++k+ +  l+ e +  yl+  +yG  Ph+G+GlG erlv  ++  +nir+a+ +Pr 
  MMETSP1174-20130828|11960_1 223 DYKEDFFGKAAYLTVSGQLSAETY-ASALGDVYTFGPTFRAENSQTTRHLAEFHMIEPEIAFCDLDQSMDNAENFVKFVVSQALAKCRDdldffnqfyDKSLIERLQRVVNEPFARVSYREAISLLQTEISkdpskwsfpDVVFGTDLQTEHERWLSEtHFGTATFVHGYPRGIKAFY-MRDNEDGETVAAMDLLVPGVgELIGGSQREERLSVLQDKMAELNLNEEDYWWYLDLRRYGSVPHSGYGLGFERLVCYVTATENIRDAIAYPRY 492
                  566679*************98875.66799*********************************************************998888887654455666667889************9998653211122223357789************72689999*************.5666899999****99866449*********************************************************************96 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   8.7e-18     6e-15      12     260 ..      39     304 ..      29     325 .. 0.83
   2 !   46.5   0.0   5.5e-16   3.7e-13     459     556 ..     397     491 ..     354     497 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 8.7e-18
    TIGR00459  12 ekslgkkvtlaGWverrkdlGeliFidlrDkeg..ivqvvsdkk..kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvln..kskkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyL....vPsRvk............kgefya....LpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvsevfkev 260
                   + +gk+vt++GWv++ +    l Fi + D +    +q v++ +  ++  e++kel +   v ++g+++  +        + +++e++a +++v+   k k+ Pl+ ++++  e +  +  +L  R ++++   + Rs ++ a+ ++++d gF  +  P++t +  eGa +       Ps v             k+ f+     L  s ql      +s +   y     fR e++   R   ef  i+ e++F++ ++ m+ +e+ v+ v ++ 
  MMETSP1174-20130828|11960_1  39 DEIVGKDVTIKGWVRTLRAQKTLAFIEVNDGSSrfGLQAVCEASnlENFDEVVKELSTGASVSIQGRLIESP-------AKGQKYELKATHVEVVGtcKGKEYPLQKKRHS-LEFL-REIAHLRARTNTIAAVARVRSVLAFATHEYFQDLGFHFLQSPLITASDCEGAGEMFrvttLPSEVAkipttddgmvdyKEDFFGkaayLTVSGQLSAET-YASALGDVYTFGPTFRAENSQTTRHlAEFHMIEPEIAFCDLDQSMDNAENFVKFVVSQA 304
                  5679**************************8886668999999976666789999999999*****995555.......56677777777777776225666676655444.4443.58899***********************************************88643333699998999*********999996334477777776664.68999999***************9758************************99988775 PP

  == domain 2    score: 46.5 bits;  conditional E-value: 5.5e-16
    TIGR00459 459 leklekapeealaeayDlvlnGv.elGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPk 556
                  +  ++++++  +  a Dl + Gv el gGs R    ++ +  ++ l+++ee     + + l+   yG+ ph+G +lG++Rlv  ++ t++iRd ia+P+
  MMETSP1174-20130828|11960_1 397 AFYMRDNEDGETVAAMDLLVPGVgELIGGSQREERLSVLQDKMAELNLNEE----DYWWYLDLRRYGSVPHSGYGLGFERLVCYVTATENIRDAIAYPR 491
                  4445555556667899******989*********99998888999****99....5999***************************************7 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-07   0.00027      47     199 ..      37     190 ..      16     201 .. 0.71
   2 !   47.4   0.0   3.3e-16   2.3e-13     240     491 ..     250     491 ..     246     494 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.9e-07
    TIGR00499  47 eeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvn.kdklsedveeleeklldlGDiigvkGkl..kktktgelsvkveelklltkal...rplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPil 199
                  +e e   + v+i G + + R+++ ++Fi+++d s++  l    + +  e+++e  ++l  +G  + ++G l  + +k ++  +k+++++++  +     pl +k h l   E       l   +n +   + ++Rs +  a  +++++ gf  +  P++
  MMETSP1174-20130828|11960_1  37 PEDEIVGKDVTIKGWVRTLRAQKTLAFIEVNDGSSRFGLQAVcEASNLENFDEVVKEL-STGASVSIQGRLieSPAKGQKYELKATHVEVVGTCKgkeYPLQKKRHSL---EFLREIAHLRARTN-TIAAVARVRSVLAFATHEYFQDLGFHFLQSPLI 190
                  466667899*************************998775440344467788877777.9***********5555677788999999999998862113455555555...33333344444455.555566666666666666666666666666655 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 3.3e-16
    TIGR00499 240 lekvyEigrvFRnEGvd.ttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaeks...lslgkilnklfeefvEetliq.PtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDe.dfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
                  l  vy  g +FR E  + t+H +EF +iE   a+ d+++ ++++e+++k++v++ l +++      +ld+ +++   +++e+++++ +e    +  ++  e+   l+++++++ ++ s   +  g  l++  e+ + et+    tf+ +yP  i     rd+e+ e +   +l + g        El    + +er++  ++  ++++ + ++ D+  +++  +yG +p +G+G+G +Rlv  +t +++ird +++p 
  MMETSP1174-20130828|11960_1 250 LGDVYTFGPTFRAENSQtTRHLAEFHMIEPEIAFCDLDQSMDNAENFVKFVVSQALAKCR-----DDLDFFNQFYDKSLIERLQRVVNEP---FARVSYREAISLLQTEISKDPSKWSfpdVVFGTDLQTEHERWLSETHFGtATFVHGYPRGIKAFYMRDNEDGETVAAMDLLVPGV------GELIGGSQREERLSV-LQ-DKMAELNLNEEDYwWYLDLRRYGSVPHSGYGLGFERLVCYVTATENIRDAIAYPR 491
                  678**********9876268********************************99885554.....5789999999999999999665444...778899999999999998866555544455566667777777666665449******************************9874......466666666666643.33.334444444445514666678*******************************995 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.6e-11   1.1e-08      70     303 ..     247     488 ..     224     489 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.6e-11
    TIGR00462  70 aagsgkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle..........deeaeverlsyaeaferylgidpltasleelkeaaekag.eaaseeedredlldlllvekvepklgke...rptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevla 303
                  a+  g+++ ++ +fR e++  ++H  EF+m+E   + +dl++ m++ e+++++v++          d ++++   s  e ++r+++    ++s +e  ++++++  +  s+ +  + ++ + l ++ e+ l +    + tf++ yP    a    +++d ++ + ++l + g+       EL+  +++++R++  +++ ++l+l+e +    +l+  + g  + sG  lG++RL+  ++ +e+i++ +a
  MMETSP1174-20130828|11960_1 247 ASALGDVYTFGPTFRAENSqTTRHLAEFHMIEPEIAFCDLDQSMDNAENFVKFVVSqalakcrddlDFFNQFYDKSLIERLQRVVNEPFARVSYREAISLLQTEIsKDPSKWSFPDVVFGTDLQTEHERWLSEThfgTATFVHGYPRGIKAFYMRDNEDGETVAAMDLLVPGV------GELIGGSQREERLSVLQDKMAELNLNEEDYW-WYLDLRRYGSVPHSGYGLGFERLVCYVTATENIRDAIA 488
                  77889**********99875899********************************977777777666666666666666666666666655544444444443331444444455566667777777777765423378*******998888777777777666788877766......89**99999***9988888888887776554.4566667777789********************99876 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00048      0.33     107     154 ..     253     301 ..     249     311 .. 0.73
   2 ?    2.2   0.0      0.03        21     202     228 ..     460     486 ..     450     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00048
    TIGR02367 107 ifeiGscyrke.sdGsehleeftmlnlvelGspeeerrerleelikevl 154
                  ++  G+ +r e s+ ++hl ef m++       +++  ++ e+++k v+
  MMETSP1174-20130828|11960_1 253 VYTFGPTFRAEnSQTTRHLAEFHMIEPEIAFCDLDQSMDNAENFVKFVV 301
                  6788*****875899*********9744444445556666666666555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.03
    TIGR02367 202 vkpwvGlGfGlerllkvredtknvrsa 228
                  + p  G G+G+erl+     t+n+r a
  MMETSP1174-20130828|11960_1 460 SVPHSGYGLGFERLVCYVTATENIRDA 486
                  56999***********99999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 1264.05
//
Query:       MMETSP1174-20130828|11968_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 964.78
//
Query:       MMETSP1174-20130828|11970_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 491.45
//
Query:       MMETSP1174-20130828|11974_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.54
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|11973_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 664.07
//
Query:       MMETSP1174-20130828|11976_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|11978_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1174-20130828|11971_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.92
# Mc/sec: 946.88
//
Query:       MMETSP1174-20130828|11981_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.66
# Mc/sec: 60.00
//
Query:       MMETSP1174-20130828|11986_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.68
# Mc/sec: 194.10
//
Query:       MMETSP1174-20130828|11987_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1309.33
//
Query:       MMETSP1174-20130828|11992_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 647.95
//
Query:       MMETSP1174-20130828|11995_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.63
# Mc/sec: 842.22
//
Query:       MMETSP1174-20130828|11988_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-192  637.4   0.0   9.7e-166  550.2   0.0    2.0  2  TIGR00337 PyrG: CTP synthase
      1e-07   29.4   0.0    3.2e-06   24.5   0.0    2.5  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    2.1e-05   21.5   0.0     0.0011   15.8   0.0    2.1  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    6.8e-05   20.6   0.3    0.00075   17.2   0.0    2.2  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.19    9.3   0.0    2.4  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
      0.014   11.4   0.0       0.09    8.8   0.0    2.1  3  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
      0.026   10.3   0.0      0.037    9.8   0.0    1.2  1  TIGR01815 TrpE-clade3: anthranilate synthase
      0.029   10.5   0.0      0.077    9.1   0.0    1.6  2  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  550.2   0.0  1.9e-168  9.7e-166      52     440 ..       1     408 [.       1     415 [. 0.97
   2 !   85.2   0.0   1.6e-27     8e-25     446     525 ..     447     531 ..     437     532 .. 0.88

  Alignments for each domain:
  == domain 1    score: 550.2 bits;  conditional E-value: 1.9e-168
    TIGR00337  52 lsPlehGevfvlddGaetdldlGhyerfldteltkennittGkiyskvlekerkGdylGktvqviPhitdeikdrikrvak.......seadvviveiGGtvGdieslpfleairqlkkevgkenvlfihvtlvPyikaagelktkPtqhsvkelrslGiqPdiiicrseeelkkelkekialfcdveeeavieakdvesiyevPlllkkeklddlllkrlkleek...eadlseweelveklaeskeevkialvGkyvelkdaylsvkealkhaalkldlkvnikwidsedleeeeaellee..........vdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefarnvlglkeanstefdeetkepvvallpeqkdkedlGgtmrlGayevklk 440
                  +sP+ehGevfvlddG+e+dldlG+yerfl+++lt+++nittGk+y++v+++er+GdylGktvqv+Phit+e++d+i+rva        + +dv++ve+GGtvGdies++flea+rq+++ vg en+ f+hv+lvP++ + ge+ktkPtqh vkelr +G+ P++iicrs  el +++ +kialfc+v+ ++v++++dv+++y+vPl+l+++++  +l+++l++e+     +dl++w+++ + +++ +  v+ia+vGky +l+d+ylsv++a+khaa+++++++ i wi++++l + ++e++e+          vdgi+vPGGfGerGveGki ++kyare k+P+lG+clG+q+ v+e+ar vl    ans efde+t+ p+v ++pe++ k+++GgtmrlGa++++l 
  MMETSP1174-20130828|11988_1   1 MSPFEHGEVFVLDDGGESDLDLGNYERFLEISLTRNHNITTGKVYQNVIQRERRGDYLGKTVQVVPHITNEVQDWIERVAPipvdgtgETPDVCMVEVGGTVGDIESMVFLEALRQFQFRVGVENIFFVHVSLVPVLGSVGEQKTKPTQHGVKELRMVGLSPNMIICRSADELLTSTCHKIALFCHVKPTNVLSVHDVSNVYHVPLILQQQNILPTLQAHLRFEHVeklVPDLERWSAMAHTVDSCNLGVRIAIVGKYCDLQDSYLSVIKAIKHAAINARRQLTIIWIEASHLVSMGEEDKERhttawaslksVDGIVVPGGFGERGVEGKIATAKYAREAKVPYLGVCLGMQLLVVEYARTVLRKPLANSMEFDERTPDPLVIFMPEID-KTTMGGTMRLGARKTILC 408
                  9*******************************************************************************99999988899***********************************************************************************************************************************9988555689*************************************************************98886666666778999999****************************************************************************8.99***********99885 PP

  == domain 2    score: 85.2 bits;  conditional E-value: 1.6e-27
    TIGR00337 446 kklygke...evkerhrhryevnnelleeleekGlivsgksedgklveiielkd..hpffvatqfhPefksrveepsklflglvk 525
                    ly+     e++erhrhryevn+e+++ le +Gl ++g++e+g+++ei el+   hpf+++tq+hPefksr+ +ps++flg+v 
  MMETSP1174-20130828|11988_1 447 AMLYKVPfdgEIMERHRHRYEVNPEMVDALEGAGLNLVGRDETGQRMEIAELPRtvHPFYFGTQYHPEFKSRPLNPSPPFLGVVL 531
                  45555333339*****************************************86569*************************986 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.3e-09   3.2e-06      35      93 ..     309     365 ..     299     377 .. 0.85
   2 ?    2.0   0.0     0.051        26     158     167 ..     506     515 ..     481     519 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 6.3e-09
    TIGR00888  35 eeikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgever 93 
                    +k  ++ gi++ Gg      e+   ++++  e++vP lG+C+Gmqll+  +  +v r
  MMETSP1174-20130828|11988_1 309 ASLK--SVDGIVVPGGFGERGVEGKIATAKYAREAKVPYLGVCLGMQLLVVEYARTVLR 365
                  4555..456*****************************************999988866 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.051
    TIGR00888 158 lyGvqfhPev 167
                   +G q+hPe 
  MMETSP1174-20130828|11988_1 506 YFGTQYHPEF 515
                  47*******6 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06    0.0011     217     260 ..     314     356 ..     301     366 .. 0.86
   2 ?    3.4   0.0     0.013       6.6     294     347 ..     462     521 ..     457     531 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.2e-06
    TIGR01368 217 pdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqlla 260
                   dgi++  G G+ + ve  i+t k + eak+P +G+clG qll 
  MMETSP1174-20130828|11988_1 314 VDGIVVPGGFGE-RGVEGKIATAKYAREAKVPYLGVCLGMQLLV 356
                  48*********9.7899*************************96 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.013
    TIGR01368 294 qNHgyavdeeslkeeelevthvnlnDgtveglehkelp......vfsvQyHPeaspGphd 347
                  + H y v++e +++ e         D+t + +e  elp      +f  QyHPe ++ p +
  MMETSP1174-20130828|11988_1 462 HRHRYEVNPEMVDALEGAGLNLVGRDETGQRMEIAELPrtvhpfYFGTQYHPEFKSRPLN 521
                  56888888888776666666666678887777777765444444799******9988765 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.5e-06   0.00075      32      86 ..     309     357 ..     290     368 .. 0.69
   2 ?    0.6   0.1      0.18        93     174     182 ..     506     514 ..     501     519 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.5e-06
    TIGR01855  32 kelekadklvlPGVGafkeamk.klrelelellaekvvkkkkpvlgiClGmQllfe 86 
                   +l+++d +v+PG    + +++ k+      ++a+ ++++k p lg+ClGmQll+ 
  MMETSP1174-20130828|11988_1 309 ASLKSVDGIVVPGG-FGERGVEgKI------ATAKYAREAKVPYLGVCLGMQLLVV 357
                  56778888888873.2222222022......33456789999***********975 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
    TIGR01855 174 ivgvQFHPE 182
                  ++g+Q+HPE
  MMETSP1174-20130828|11988_1 506 YFGTQYHPE 514
                  69******9 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00037      0.19      71      92 ..     339     360 ..     289     371 .. 0.71
   2 ?    0.9   0.0      0.14        71     155     175 ..     493     514 ..     450     517 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00037
    TIGR00566  71 laGklPilGvClGhqalaqafG 92 
                     k+P lGvClG q l     
  MMETSP1174-20130828|11988_1 339 REAKVPYLGVCLGMQLLVVEYA 360
                  3579***********9876555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.14
    TIGR00566 155 ieimai.rhrdlpleGvqfhPe 175
                   ei  + r+ +   +G q+hPe
  MMETSP1174-20130828|11988_1 493 MEIAELpRTVHPFYFGTQYHPE 514
                  444444233444469******9 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.96   4.9e+02     594     621 ..     176     203 ..     163     206 .. 0.80
   2 ?    8.8   0.0   0.00017      0.09      41     111 ..     300     367 ..     258     373 .. 0.75
   3 ?   -0.7   0.0      0.13        67     173     185 ..     501     514 ..     458     519 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.96
    TIGR01823 594 nDLyelvkkgdvrveellsveeharvyq 621
                     ++++    v+  ++lsv++ ++vy 
  MMETSP1174-20130828|11988_1 176 STCHKIALFCHVKPTNVLSVHDVSNVYH 203
                  55677777788999999*********97 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00017
    TIGR01823  41 Dkld.ddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlp 111
                  Dk      +  l+  d ivv  G G+  v     i    +      +vP lG+CLG+q l++    ++ r p
  MMETSP1174-20130828|11988_1 300 DKERhTTAWASLKSVDGIVVPGGFGERGVE--GKIATAKYARE--AKVPYLGVCLGMQLLVVEYARTVLRKP 367
                  4444366789999999***99999999554..44444445444..68*************998887776655 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.13
    TIGR01823 173 kkkP.ifGvqyhPe 185
                  + +P +fG qyhPe
  MMETSP1174-20130828|11988_1 501 TVHPfYFGTQYHPE 514
                  3344279******9 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.2e-05     0.037     577     616 ..     331     368 ..     301     417 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.2e-05
    TIGR01815 577 vketikaalardlpvfGvclGlqglveafGGeldvlaepv 616
                    +t k a+  ++p +GvclG+q lv  +     vl +p+
  MMETSP1174-20130828|11988_1 331 KIATAKYAREAKVPYLGVCLGMQLLVVEYAR--TVLRKPL 368
                  34678889999**************999965..4555554 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.49   2.5e+02     495     552 ..      43     102 ..      37     116 .. 0.87
   2 ?    9.1   0.0   0.00015     0.077     458     510 ..     140     192 ..     128     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.49
    TIGR00232 495 aayklalesqdaptvlilsRqnlpqleesslekvlkGgYvlkdskn..PdiiliatGsev 552
                    y++ ++++++   l  + q +p++ ++  + +++ + +  d  +  Pd+ ++  G  v
  MMETSP1174-20130828|11988_1  43 KVYQNVIQRERRGDYLGKTVQVVPHITNEVQDWIERVAPIPVDGTGetPDVCMVEVGGTV 102
                  568899999999999999*********99999****999999887778***999988766 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00015
    TIGR00232 458 igvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvl 510
                  +g  +  pt + v +l ++ + pn+ + R aDe  t+++ k+al  + +pt +
  MMETSP1174-20130828|11988_1 140 VGEQKTKPTQHGVKELRMVGLSPNMIICRSADELLTSTCHKIALFCHVKPTNV 192
                  4444557999**********************************999888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.79
# Mc/sec: 920.58
//
Query:       MMETSP1174-20130828|11996_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|11991_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1602.35
//
Query:       MMETSP1174-20130828|11997_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 1001.40
//
Query:       MMETSP1174-20130828|12000_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.4   0.1      0.022   11.5   0.1    1.1  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-06     0.022     180     214 ..      38      72 ..      15      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-06
    TIGR03417 180 kdarPfcltvslthPhdPyvirkkywdlyedeeil 214
                  ++   + +  sl  Ph P+v++  y  +y+ e  +
  MMETSP1174-20130828|12000_1  38 REGSDWVIHLSLLRPHPPFVAPPPYNTMYDPECLP 72 
                  456789***********************865332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 266.62
//
Query:       MMETSP1174-20130828|12002_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 321.17
//
Query:       MMETSP1174-20130828|11999_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 581.58
//
Query:       MMETSP1174-20130828|12004_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-13   45.7   0.0    5.4e-13   45.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.2e-08   31.1   0.1    5.2e-08   30.4   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
       0.01   12.3   0.0      0.016   11.6   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   3.9e-16   5.4e-13       4     137 ..      18     148 ..      15     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 3.9e-16
    TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLs.hPnivaLlDs.GeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved 137
                   kvaik ++  +  ++   +   Re+ l   Ls hPn++ + +   ++  + l+ v e+ +   l  ++++  aL+ a+t   m q   ++a  hd+ ++hRDLkP n++v+ + +    ++ DFG++   +g+  
  MMETSP1174-20130828|12004_1  18 CKVAIKKIKPMT-AHAADAKHVLREVRLMRYLSaHPNVITISNLfANTAADELYIVMELLDS-DLHRIIQSPQALSDAHTRYFMYQLFRGIAYLHDNNIIHRDLKPGNLLVTRNCD---LRITDFGLAREKAGAVG 148
                  689999999874.445566777899999999965***998755324555568*******986.6999********************************************97654...57899*99876666544 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.8e-11   5.2e-08      66     139 ..      63     143 ..      30     153 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.8e-11
    TIGR03724  66 dvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkks 139
                  +   +e  ivme ++ ++l+ ++++ +         +++++ + ++ lH+++i+h Dl + N++v ++ +l + DfGL++ +
  MMETSP1174-20130828|12004_1  63 NTAADELYIVMELLD-SDLHRIIQSPQAlsdahtrYFMYQLFRGIAYLHDNNIIHRDLKPGNLLVtRNCDLRITDFGLAREK 143
                  345677889998775.56777777755568888878999*************************955889*********976 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.2e-05     0.016     260     302 ..      90     139 ..      77     154 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
    TIGR01982 260 laenlvesflkqvlr.......dgfFHaDlHpGNilvakdgkiialDfGi 302
                  l+++ ++ f+ q +r       +++ H Dl pGN+lv+++  + + DfG+
  MMETSP1174-20130828|12004_1  90 LSDAHTRYFMYQLFRgiaylhdNNIIHRDLKPGNLLVTRNCDLRITDFGL 139
                  55555666666555422222226789***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 872.16
//
Query:       MMETSP1174-20130828|12005_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1194.19
//
Query:       MMETSP1174-20130828|12008_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-15   55.3   0.2    3.6e-15   54.1   0.1    1.6  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
     0.0016   15.7   0.2      0.051   10.7   0.0    2.0  2  TIGR03448 mycothiol_MshD: mycothiol synthase
     0.0053   14.7   0.0     0.0072   14.3   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
  ------ inclusion threshold ------
      0.018   12.3   0.1      0.063   10.5   0.0    1.8  2  TIGR03827 GNAT_ablB: putative beta-lysine N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1   3.5e-18   3.6e-15      40     132 .]      60     165 ..      26     165 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 3.5e-18
    TIGR01575  40 ggkvvGyiv............vqivldeaeilniavkpeyqgqGiGraLlkelikeakerg.vkeifLEVResNvaAqaLYk.klgfkeialrknYYkdseedAlvM 132
                  +g+vvGy++            v+ ++  ++i+++av p++++ G+++++++++ ++++ +  + +  L VR  N+ A +LY+ +lg++ ++++ nYY+d+e dA++M
  MMETSP1174-20130828|12008_1  60 KGEVVGYVLgrmetgtskaglVNRMTRHGHITSLAVMPDFRRLGLAQQMMEKVHSQMRLHYsADKSSLHVRITNEGAVRLYQnSLGYETMQVIGNYYSDGE-DAFLM 165
                  6778888877767766666667778899****************************99887799*****************7479**************98.****9 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0     5e-05     0.051      64     100 ..      80     116 ..      66     123 .. 0.84
   2 !    3.3   0.0    0.0089       9.1     264     290 ..     124     151 ..     113     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5e-05
    TIGR03448  64 lseardadsemaElvvhPaaRrrGigkalvrallakt 100
                  l++   ++++ + l+v P++Rr G+++++++++ ++ 
  MMETSP1174-20130828|12008_1  80 LVNRMTRHGHITSLAVMPDFRRLGLAQQMMEKVHSQM 116
                  4556678999*********************998876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0089
    TIGR03448 264 avlLYveadneaAvrtYe.kLgFtvaev 290
                  +  L v   ne Avr+Y+ +Lg+++++v
  MMETSP1174-20130828|12008_1 124 KSSLHVRITNEGAVRLYQnSLGYETMQV 151
                  556899999********8469**99876 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     7e-06    0.0072      72     144 ..      82     157 ..      70     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7e-06
    TIGR03585  72 nlvhksaalgiY.anpkvk.kgkGsvleealleyafeklklkkLkleVlesNekalklyek.fgfelegvlkqfia 144
                  n ++++  +      p+ +  g  + ++e++ +++  +   +k +l+V  +Ne a++ly++  g+e  +v+ ++ +
  MMETSP1174-20130828|12008_1  82 NRMTRHGHITSLaVMPDFRrLGLAQQMMEKVHSQMRLHYSADKSSLHVRITNEGAVRLYQNsLGYETMQVIGNYYS 157
                  55566666665545677777899999*********************************96379**9999888754 PP

>> TIGR03827  GNAT_ablB: putative beta-lysine N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.2e-05     0.063     177     213 ..      81     117 ..      60     132 .. 0.87
   2 ?   -0.6   0.0      0.15   1.6e+02      58      79 ..     145     167 ..     121     186 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.2e-05
    TIGR03827 177 idleeknaElTdfatlpeyrgkglakeLlaelEkelk 213
                  +++ +++  +T  a++p++r+ gla+++++++  +++
  MMETSP1174-20130828|12008_1  81 VNRMTRHGHITSLAVMPDFRRLGLAQQMMEKVHSQMR 117
                  677889999*********************9999886 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.15
    TIGR03827  58 gyveEaaipgyysgkd.avflsk 79 
                  gy++  +i +yys+ + a +++ 
  MMETSP1174-20130828|12008_1 145 GYETMQVIGNYYSDGEdAFLMTA 167
                  56666677788876554666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|12010_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 746.42
//
Query:       MMETSP1174-20130828|12011_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 291.60
//
Query:       MMETSP1174-20130828|12015_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 221.17
//
Query:       MMETSP1174-20130828|12012_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 864.53
//
Query:       MMETSP1174-20130828|12014_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.62
# Mc/sec: 1207.06
//
Query:       MMETSP1174-20130828|12017_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.98    5.9  10.8        1.8    5.0   7.5    1.4  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.5   0.00044       1.8     196     312 ..     292     401 ..     278     476 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00044
    TIGR02927 196 vlakiGddagaedepkeeekpekseakseekpeaaepkaekkeepkpepkaeekapaakaatektaadsspyvt.plvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeake 312
                  v+a+i    g e+e +++++ ++++ +s++k +a ++ a  ++++k ++k++    + +  ++++++ s +  t  +vr l +e+   l+ v+ + + G ir    la a a++ a+ 
  MMETSP1174-20130828|12017_1 292 VMARIL---GKEQEQQQQQQRQPQRGRSKPKQQAVQQTAPTTPKKKKKTKQQ----QQQQQQQAAQSSSQNNRTaDMVR-LVEEDLCLLADVTDALIDGGIRSLSALAVATADDLAAL 401
                  444443...1222222222222223333333333333333333222222222....22222222233333334405555.77888888****************99999998876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       629  (0.15334); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.18s 00:00:00.95 Elapsed: 00:00:00.70
# Mc/sec: 903.18
//
Query:       MMETSP1174-20130828|12025_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1174-20130828|12027_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|12028_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 331.97
//
Query:       MMETSP1174-20130828|12034_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 801.04
//
Query:       MMETSP1174-20130828|12031_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-08   29.5   0.0    9.3e-07   25.9   0.0    2.0  2  TIGR03417 chol_sulfatase: choline-sulfatase
    9.9e-06   22.8   0.0    1.6e-05   22.1   0.0    1.2  1  TIGR03397 acid_phos_Burk: acid phosphatase, Burkholderia-type


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.6e-10   9.3e-07     243     359 ..      83     210 ..      39     278 .. 0.65
   2 !    1.7   0.0    0.0098        20     404     421 ..     288     305 ..     281     335 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.6e-10
    TIGR03417 243 iteeqirrarrayfaai.syvddkiGellevleetrladdtivvfvsdhGdmlGerGlw.y.....kmsffegsarvPllvaape.rleagrv.eaa....vstvdllPtlvelagveleevlpaldGes 359
                    + q +   ra fa+i  y+d  i +++e le++++  +t+vv++sd G    e G + y     k s +eg+ rvP +v++ +  + ++    ++        d lPtl   a+ +   +   +dG +
  MMETSP1174-20130828|12031_1  83 KIR-QAHGNDRAKFAEIlLYLDYGIEKIVEQLERSQMLSKTLVVVASDNGGCPDENGGFnYplrgqKGSVWEGGVRVPGFVYSSSnDIIPSNArGTSyaklFHCTDWLPTLLRAASSAS-LIPSGIDGVD 210
                  222.233345888988736*********************************999975435444447899********98876441344433302331111334699999988776543.2333456644 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.0098
    TIGR03417 404 eqlydleadPkelenlae 421
                  + l++++adP+e ++l +
  MMETSP1174-20130828|12031_1 288 SALFNISADPQETTDLWD 305
                  579************976 PP

>> TIGR03397  acid_phos_Burk: acid phosphatase, Burkholderia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   7.9e-09   1.6e-05     357     424 ..      90     164 ..      81     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.9e-09
    TIGR03397 357 nehaGyadva.aGdrhiaevikklqksPqwknmvvvvty......denGGfwdhvapPkGdrwGPGtriPalvvs 424
                  n  a +a++    d  i++++++l++s   ++++vvv+       denGGf  +    kG  w  G+r+P +v s
  MMETSP1174-20130828|12031_1  90 NDRAKFAEILlYLDYGIEKIVEQLERSQMLSKTLVVVASdnggcpDENGGFNYPLRGQKGSVWEGGVRVPGFVYS 164
                  6677777775246999*********************8733333369*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1002.56
//
Query:       MMETSP1174-20130828|12038_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 548.26
//
Query:       MMETSP1174-20130828|12039_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 952.46
//
Query:       MMETSP1174-20130828|12041_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|12043_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.93
# Mc/sec: 482.54
//
Query:       MMETSP1174-20130828|12044_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   15.1   4.4     0.0056   15.0   3.0    1.1  1  TIGR02300 FYDLN_acid: TIGR02300 family protein


Domain annotation for each model (and alignments):
>> TIGR02300  FYDLN_acid: TIGR02300 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   3.0   1.4e-06    0.0056      81     115 ..       7      44 ..       2      50 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.4e-06
    TIGR02300  81 vdtGadvPesg...ddlaededledddddvtfledeed 115
                   + Ga vP+ +    d + ded++dddddv  l d + 
  MMETSP1174-20130828|12044_1   7 FSMGARVPQKKptwADSDCDEDIDDDDDDVDALMDTNG 44 
                  5778888887622246689**********999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|12047_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|12049_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 766.18
//
Query:       MMETSP1174-20130828|12052_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.43
# Mc/sec: 208.73
//
Query:       MMETSP1174-20130828|12054_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 550.71
//
Query:       MMETSP1174-20130828|12053_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|12057_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.57
# Mc/sec: 152.47
//
Query:       MMETSP1174-20130828|12055_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-26   90.6   0.2    2.5e-26   90.2   0.2    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0079   14.1   0.0       0.34    8.9   0.0    2.3  2  TIGR02391 hypoth_ymh: TIGR02391 family protein
     0.0097   12.8   0.3      0.059   10.2   0.2    2.0  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.012   12.6   0.0       0.02   11.8   0.0    1.4  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.2   2.5e-29   2.5e-26       2     162 ..      46     205 ..      45     207 .. 0.97

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 2.5e-29
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +++k+ ++G+ +vGKs++   + +++ + +    + + +++ ++i  +Gk++++ ++DTaGqe++  ++r y+r++++ + v+di+   +++ ++  ++ +e++++  +++ +++l +nK D+++  +++t++++ fa  n+  + elsa ++  i ++fk +
  MMETSP1174-20130828|12055_1  46 TYFKLILIGDTEVGKSSIVLMYVEKE-FDDTQACTLGVEFNVKSIIMKGKKVELRIWDTAGQEAYLSMTRTYYRNTSGCMIVYDITRK-ESFLNVS-RWLEEVRQHSANQNLVVMLIGNKADKNSrrQVSTEEGKAFADENGMLFGELSATKEGDIAQAFKEL 205
                  5789**********************.8888889******************************************************.*******.********************************************************9999999875 PP

>> TIGR02391  hypoth_ymh: TIGR02391 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.023        24      74      97 ..     104     127 ..      85     138 .. 0.81
   2 !    8.9   0.0   0.00033      0.34      48      95 ..     176     221 ..     163     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.023
    TIGR02391  74 eglskllagaitlfrNpkaHalrk 97 
                   g+++ l ++ t +rN+     ++
  MMETSP1174-20130828|12055_1 104 AGQEAYLSMTRTYYRNTSGCMIVY 127
                  7999************97666555 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00033
    TIGR02391  48 dqaFssknepillinelqteaeqneqeglskllagaitlfrNpkaHal 95 
                  ++aF ++n ++l++ el++ +e++  +++++l+  + + + N ++  l
  MMETSP1174-20130828|12055_1 176 GKAFADEN-GMLFG-ELSATKEGDIAQAFKELVGNVYEKYENDPQLFL 221
                  58999555.77766.6788899********************987555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   5.7e-05     0.059     168     233 ..      40     106 ..       6     219 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.7e-05
    TIGR03594 168 eeeeeeepikiaiiGrpNvGKStLvNallgeervivsd.iaGtTrDsidievevkgkkylliDTAGi 233
                  ++++ e+ +k+ +iG   vGKS++v   +++e   ++  + G+  +  +i ++ k+ ++++ DTAG 
  MMETSP1174-20130828|12055_1  40 DQNDMETYFKLILIGDTEVGKSSIVLMYVEKEFDDTQAcTLGVEFNVKSIIMKGKKVELRIWDTAGQ 106
                  333345679***************9888877754443314466667777777778888888999983 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.9e-05      0.02     196     233 ..      34      71 ..      11     109 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.9e-05
    TIGR00450 196 llnsr.kkleklkdglklaivGktNvGKSSLlNallkkd 233
                  l+ +  ++ + +++ +kl ++G+t vGKSS++ ++++k+
  MMETSP1174-20130828|12055_1  34 LIVMAsDQ-NDMETYFKLILIGDTEVGKSSIVLMYVEKE 71 
                  55553245.8999*****************987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|12056_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   54.3   0.0      5e-11   40.6   0.0    2.2  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.1e-13   49.1   0.1    6.2e-10   36.8   0.0    2.5  3  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.5e-12   44.8   0.0    7.9e-08   30.1   0.0    2.1  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-11   42.1   0.0    5.1e-09   33.6   0.0    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.3e-11   41.4   0.0    8.3e-10   35.5   0.0    2.0  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.8e-11   41.3   0.0    2.3e-09   35.0   0.0    2.1  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    4.1e-11   40.6   0.0    2.2e-07   28.4   0.0    2.1  2  TIGR02415 23BDH: acetoin reductases
    6.3e-11   39.9   0.0    2.1e-05   21.9   0.0    2.1  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    5.6e-08   30.0   0.0    1.2e-07   28.9   0.0    1.5  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    8.6e-07   26.4   0.0    0.00067   16.9   0.0    2.2  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.3e-06   25.0   0.0     0.0012   16.2   0.0    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0031   14.8   0.4      0.069   10.4   0.0    2.7  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.5e-13     5e-11       2      91 ..      69     159 ..      68     184 .. 0.85
   2 !   11.4   0.0   0.00012      0.04     145     194 ..     249     298 ..     228     304 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.5e-13
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvk.aaavkldvsdeeevkelveeveeelgeidilvnnAGitrDkl 91 
                  +vtGasrgiG + +++l ++++  vi   ++   a++l++ lk ag +  +a++ld+s +++++++ +++ ++++++d+l+n AGi +++ 
  MMETSP1174-20130828|12056_1  69 VVTGASRGIGLEFVRQLLDSTSGHVIAACRSPGDATDLQHILKRAGSErGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEEG 159
                  79*************999887776666678889999******99987527899*********************************87765 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00012
    TIGR01830 145 qanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvk 194
                     Y  sKa l   tk +a El + +i v ++ PG  et + e + ++v+
  MMETSP1174-20130828|12056_1 249 WYSYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEPFAKNVR 298
                  55799**********************************99998887776 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.8e-12   6.2e-10       7     112 ..      67     176 ..      62     185 .. 0.84
   2 ?   -2.0   0.0       1.3   4.3e+02     173     200 ..     187     213 ..     177     227 .. 0.64
   3 !    9.7   0.0   0.00035      0.12     152     191 ..     251     290 ..     231     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.8e-12
    TIGR01832   7 valvtGantGlGqgiavglae.aGadivgvgis..elsetqekvealGr.kflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnl 112
                  v +vtGa++G+G  ++  l + + ++++++ +s  ++++ q+ +++ G  + ++l +dl+ +++++++ d++ ++ +++d l+n aGi++ e   + +e+   +vl  ++
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDsTSGHVIAACRSpgDATDLQHILKRAGSeRGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEEGQKDAPERALAQVLRFDM 176
                  679**********999887651567888888772255566788888886256899********************************************99999987665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.3
    TIGR01832 173 kkginvnaiaPGyletnntealradekr 200
                  +++i+vn+i P  + t+  e l   ++r
  MMETSP1174-20130828|12056_1 187 AEDIEVNSIGPI-MLTQALEPLLKSKNR 213
                  678999999996.445555555444444 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00035
    TIGR01832 152 sytasksavaGltkllanewakkginvnaiaPGyletnnt 191
                  sy  sk a+   tk +a e+ ++gi v ++ PG  et  +
  MMETSP1174-20130828|12056_1 251 SYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLS 290
                  89*******************************9998655 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.3e-10   7.9e-08       2     110 ..      67     176 ..      66     191 .. 0.78
   2 !   12.7   0.0   4.8e-05     0.016     146     196 ..     248     298 ..     235     305 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.3e-10
    TIGR01829   2 valvtGglgGiGtaickrlak..dGykvvanvap.neerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnl 110
                  v +vtG+++GiG +  ++l +   G+ ++a  +p ++   +++l++ + e      +  d+s+ ++  +  ++++++  +vd+l+n aGi  ++  k   + +  +v++ ++
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDstSGHVIAACRSPgDATDLQHILKRAGSE--RGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEEGQKDAPERALAQVLRFDM 176
                  5689**************97622566666666663444444444444444..5677889*******************************9998888888877777777665 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.8e-05
    TIGR01829 146 GqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvl 196
                  G   y  +ka l   tk +a e  ++g+ v  + PG ++t + +   ++v+
  MMETSP1174-20130828|12056_1 248 GWYSYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEPFAKNVR 298
                  667899**********************************99999888887 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.5e-11   5.1e-09       3     103 ..      67     169 ..      65     182 .. 0.77
   2 !    6.4   0.0     0.003         1     149     189 ..     251     291 ..     236     301 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.5e-11
    TIGR01963   3 valvtGaasGiglaiakelaaaGa.kvvvndleeeaaeaaakeleeagg.evlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfe 103
                  v +vtGa+ Gigl+  ++l      +v+    +  +a+ +++ l++ag  +  al++d++ +++i++  +++ +++ ++d+L+n AGi h +   + p+   +
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDSTSgHVIAACRSPGDATDLQHILKRAGSeRGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEEGQKDAPERALA 169
                  679***************987654134444444566666666666665514678999*******************************997776666665555 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.003
    TIGR01963 149 aYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLve 189
                  +Y  +K +l   tK +AlE  ++gi + ++ Pg  +t L e
  MMETSP1174-20130828|12056_1 251 SYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSE 291
                  588899999999*********************99998865 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.4e-12   8.3e-10     413     507 ..      64     158 ..      56     183 .. 0.84
   2 !    3.9   0.0    0.0086         3     564     610 ..     250     297 ..     232     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.4e-12
    TIGR02632 413 arrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavsk 507
                  a+ v +vtG++ GiG e  r+l d  +  v+a   +   ++  +++ ++ G++++ al ld+  ++++ +  +++  +y  vd++ n aGi   +
  MMETSP1174-20130828|12056_1  64 ANAVFVVTGASRGIGLEFVRQLLDSTSGHVIAACRSPGDATDLQHILKRAGSERGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEE 158
                  77899******************9987666676666666666789999*******************************************8755 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0086
    TIGR02632 564 laysaakaaeahlvrllaielaelgirvntvaPdavlrG.sgifagew 610
                   +y  +kaa +   + +a+el   gi v ++ P +   G s+ fa++ 
  MMETSP1174-20130828|12056_1 250 YSYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGlSEPFAKNV 297
                  5799*****************************998777455566555 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   6.8e-12   2.3e-09       5      91 ..      67     154 ..      63     184 .. 0.82
   2 ?    4.3   0.0     0.015         5     173     229 ..     236     289 ..     225     310 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 6.8e-12
    TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdleka...ekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaav 91 
                    ++tgas g+gl+  + l++    hv+ acr    a   +++ k++g  ++  + l ldl++ ds+ +f +q+r+  +++d l+  a +
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDSTSGHVIAACRSPGDAtdlQHILKRAGSERG--SALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGI 154
                  5699****************************76555111667777776555..689*************************99866654 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.015
    TIGR01289 173 aaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtgl 229
                  a  +  i+++++ +  +y+ sk +  ++++++    +  +gi   sl+pg  ++tgl
  MMETSP1174-20130828|12056_1 236 AR-VGSINDNRLGGWYSYRVSKAALNMATKNMALELK-RSGILVVSLHPGT-TETGL 289
                  44.6778999999999********999*****99875.67**********7.46666 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.3e-10   2.2e-07       3     118 ..      68     187 ..      66     197 .. 0.84
   2 !   10.2   0.0   0.00023     0.077     149     194 ..     251     296 ..     231     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.3e-10
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadln.eetaketakelkekgt.kavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeelekl..ynvnvkgvlfGiqa 118
                   +vtGa++GiG + +++L +     ++a  + +  a++ ++ lk +g  +  a+ ld+s+++++++  +q ++k+  +d+l+n aG+ + +  ++  e  l ++  +++ +++ + G+ a
  MMETSP1174-20130828|12056_1  68 FVVTGASRGIGLEFVRQLLDSTSGHVIAACRsPGDATDLQHILKRAGSeRGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGILHEEGQKDAPERALAQVlrFDMSIMTDFEGVDA 187
                  58****************98777666666664777888888999988626799**************************************99999999999975566777776666666 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00023
    TIGR02415 149 aysstkfavrgltqtaakeLakkgitvnayaPGivktemreeidek 194
                   y  +k a+   t+  a eL  +gi v +  PG+ +t + e  +++
  MMETSP1174-20130828|12056_1 251 SYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEPFAKN 296
                  46789*********************************99887766 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     4e-06    0.0014       4      89 ..      66     153 ..      64     167 .. 0.80
   2 !   21.9   0.0     6e-08   2.1e-05     137     221 ..     231     321 ..     212     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4e-06
    TIGR03206   4 kvaivtgggggiggaicrrf..aeegakvavldlnaeaaekvaaairekgg.kaeavavditdrasvdaavaaaeealgpvdvlvnnag 89 
                   v +vtg + gig    r++  +  g  +a      +a++ + + ++ +g  +  a+a d++ ++s+d     +++    vd+l+n ag
  MMETSP1174-20130828|12056_1  66 AVFVVTGASRGIGLEFVRQLldSTSGHVIAACRSPGDATD-LQHILKRAGSeRGSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAG 153
                  6789***********9999833445667777766666654.455555555426789*******************************99 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 6e-08
    TIGR03206 137 iasdaarvgs......sgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklie.aftraiplgrlgkpdd 221
                  +as +arvgs       g   y + k  l   +k +a el r gi v  + pg t+t l e ++++  +pekl   +ft +  lg +g  d+
  MMETSP1174-20130828|12056_1 231 VASLSARVGSindnrlGGWYSYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEPFAKN-VRPEKLFSpSFTVSQLLGVIGGLDE 321
                  688899999933222224457999**********************************99988765.6799987538*********998776 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.5e-10   1.2e-07       3     205 ..      67     284 ..      65     296 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.5e-10
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeeg.........aaekkslevqvaelfGsnaiaplllikafaqrqkgtr...aelrssn.....lsivnl....vdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl 205
                  + +vtGa++ iG     +l +     v+   rs ++a+ l   l ++ ++       dls   s     +++ d   +++ r d+l+n a   +     ++da e           +     e   ae +  n+i p++l++a+    k ++   a+++ss+      s+v      v ++ d  l g+  y ++k al+  t+  alel   +i v ++ pG 
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDSTSGHVIAACRSPGDATDLQHILKRAGSERGSALALDLSTQDS----IDNFADQIRQKYNRVDLLLNVAGILHEEG--QKDAPERalaqvlrfdMSIMTDFEGVDAEDIEVNSIGPIMLTQALEPLLKSKNrpvASMTSSSpegrpPSVVASlsarVGSINDNRLGGWYSYRVSKAALNMATKNMALELKRSGILVVSLHPGT 284
                  569*****************999999******************99999988888889988765....56667777889***********9988764..566655444555544455556667777999999*********99875544443111333333222222577765111155677999*************************************96 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0016      0.54       2      60 ..      69     128 ..      68     184 .. 0.67
   2 !   16.9   0.0   1.9e-06   0.00067     136     192 ..     237     295 ..     216     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0016
    TIGR01831   2 lvtgasrgigraialkl..aadgfeiavhyrsdradaeesvaair.aqggnarllkfdvadr 60 
                  +vtgasrgig     +l  +++g+ ia  +rs   da +    ++ a    ++ l +d++ +
  MMETSP1174-20130828|12056_1  69 VVTGASRGIGLEFVRQLldSTSGHVIA-ACRSP-GDATDLQHILKrAGSERGSALALDLSTQ 128
                  69********99999983334565554.45543.3333333333303333455666665554 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.9e-06
    TIGR01831 136 svsgvmgnr..gqvnysaakagligatkalavelakrkitvnciapglidtemvaevek 192
                   v  +  nr  g   y  +ka l  atk +a+el +  i v  + pg  +t++ +   k
  MMETSP1174-20130828|12056_1 237 RVGSINDNRlgGWYSYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEPFAK 295
                  46667778866778899**********************************99776665 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.4e-06    0.0012       2     100 ..      67     157 ..      66     174 .. 0.68
   2 !    6.9   0.0    0.0024      0.81     158     200 ..     246     289 ..     220     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.4e-06
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyeri.llinnaGtlgd 100
                  + +vtGasrG+G e+ ++l          ++   R+     +++  ++    + +    +ldl+++  ++++   ++++     y+r+ ll+n aG l +
  MMETSP1174-20130828|12056_1  67 VFVVTGASRGIGLEFVRQLLDSTSG---HVIAACRSPGDATDLQHILKR-AGSERGSALALDLSTQDSIDNFADQIRQK-----YNRVdLLLNVAGILHE 157
                  789****************994444...445555555555555444443.34455567899999999888888777654.....4444245555666655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0024
    TIGR01500 158 fkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdm 200
                  + +w  Y  skaa +m  + +ale k   ++v+   pG  +t +
  MMETSP1174-20130828|12056_1 246 LGGWYSYRVSKAALNMATKNMALELKrSGILVVSLHPGTTETGL 289
                  568999********************999*********999976 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.11        37      67     104 ..     118     155 ..      64     177 .. 0.63
   2 !   10.4   0.0    0.0002     0.069     165     206 ..     251     292 ..     229     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
    TIGR03971  67 vlarkadvrkleelravveegveefGrldvvvanaGvl 104
                    a   d+ + + + +  ++  +++ r+d++++ aG+l
  MMETSP1174-20130828|12056_1 118 GSALALDLSTQDSIDNFADQIRQKYNRVDLLLNVAGIL 155
                  34444555555555555555556777788888888776 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0002
    TIGR03971 165 hyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiep 206
                   y ++k  l   tk +a+el   gi v s+hP + +t + ep
  MMETSP1174-20130828|12056_1 251 SYRVSKAALNMATKNMALELKRSGILVVSLHPGTTETGLSEP 292
                  58899999999**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1034.43
//
Query:       MMETSP1174-20130828|12060_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.9   0.0     0.0063   13.4   0.0    1.2  1  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-06    0.0063       9     105 ..      20     112 ..      13     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.5e-06
    TIGR03866   9 aaekiyvsnekdntisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianedda 105
                  + +   vs   d ti v d  t++  +tl+       +    + +  +v+ s++ +++v d++t +  ++l   +d  l  +e +g+l+  +  +d+
  MMETSP1174-20130828|12060_1  20 ECSRRLVSASTDTTIKVWDPFTWTCEHTLQGH--TNAVWALAECSGWLVSGSEDTTIKVWDPSTWTCEHTLQGHRDVVLALVECNGRLV--SGSEDT 112
                  55667899999*************99999854..34677777888889*************************9999999999999864..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 541.16
//
Query:       MMETSP1174-20130828|12058_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1745.19
//
Query:       MMETSP1174-20130828|12059_1  [L=923]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-07   27.4   1.3    1.4e-06   26.2   0.9    1.7  1  TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family
  ------ inclusion threshold ------
      0.045   10.6   2.4      0.075    9.8   1.7    1.2  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00103  DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.9   7.1e-10   1.4e-06       7      94 ..     733     816 ..     724     823 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 7.1e-10
    TIGR00103   7 nlqellkqaqkvqekikklqeelkklevtgksgaglvkveinGekelksveIdpsllddedkealeeliteAlndAvkkvkekikekv 94 
                  ++ e+ kq++k+qe i+ lq++  ++ev+ ++     +++  G     sv+ d   +  +dk++l+ +i +  nd +++v e  ke++
  MMETSP1174-20130828|12059_1 733 QMHEMQKQMRKMQETISMLQKQTTQTEVKMQAQR---TIQTPGSSRKSSVD-DHRPMSHQDKVTLSSSISSLPNDKLSRVVEIVKERM 816
                  799*******************************...********999999.6777778***********************999865 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   3.7e-05     0.075      29     126 ..     731     829 ..     719     851 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.7e-05
    TIGR00414  29 leklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelke.leeeleekllkipnlvaesvpvgkdeednl.ev 126
                  + ++ e++++++k +++i+ lqk+ ++++ +++++++ ++    + k  +++++   ++ +  l+  +++  ++kl+++ ++v+e +p+ k+e dn  e+
  MMETSP1174-20130828|12059_1 731 VSQMHEMQKQMRKMQETISMLQKQTTQTEVKMQAQRTIQTPG-SSRKSSVDDHRPMSHQDKVTLSSsISSLPNDKLSRVVEIVKERMPLLKNEGDNEiEI 829
                  6789999***************99999988888755554443.33244444444333344444443145566999*******************997533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 1845.85
//
Query:       MMETSP1174-20130828|12061_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1380.53
//
Query:       MMETSP1174-20130828|12062_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-19   66.5   0.0    5.6e-19   66.1   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    7.7e-11   39.5   0.0    9.2e-11   39.2   0.0    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.6e-10   36.4   0.0    5.3e-10   36.2   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0025   14.8   0.0      0.003   14.6   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.4e-22   5.6e-19     505     605 ..      95     193 ..      90     195 .. 0.90

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 5.4e-22
    TIGR01645 505 lrknesrvivlrnmvtPkdidetlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvaev.dqelfdqadl 605
                  l +n ++v++l+nmv+P ++d +le+e++eec+kfg v   ++y+ k +     +  v+ fv f +   + +a   ++Grff+Gr+++    + ++f + dl
  MMETSP1174-20130828|12062_1  95 LFRNPTTVLLLKNMVGPGEVDSELEKEVQEECSKFGPVRTCVVYELKGA---PPDQAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIRCAFfNETRFRNRDL 193
                  5567889*************************************99988...445569*****************************977668999988886 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     9e-14   9.2e-11     402     495 ..      97     190 ..      69     194 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 9e-14
    TIGR01622 402 nlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdk.....knsaGkvYlkfdsveaalaavkalngRyFagklitAafvvkdvysk 495
                   ++++ l+L+Nm  p +      d e++ +v+eEcsk g+v    v +     ++ a   ++ f++ e a++a+  ++gR+Fag+ i  af  +  +++
  MMETSP1174-20130828|12062_1  97 RNPTTVLLLKNMVGPGE-----VDSELEKEVQEECSKFGPVRTCVVYElkgapPDQAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIRCAFFNETRFRN 190
                  689**********9964.....5789**************97766543223335678899******************************998876665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   5.2e-13   5.3e-10     407     509 ..      97     192 ..      71     193 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 5.2e-13
    TIGR01642 407 ekptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykkgd 509
                   +pt v+ L+n+v + ++  d+e   + ++v+ee+sk+G++   v+        +     + F+ +   +sa kA   ++Gr F++r++  af++e +++++d
  MMETSP1174-20130828|12062_1  97 RNPTTVLLLKNMVGPGEV--DSE---LEKEVQEECSKFGPVRTCVVYEL--KGAPPDQAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIRCAFFNETRFRNRD 192
                  689************996..655...559****************9877..45555666799*************************************9886 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.9e-06     0.003     103     164 ..     120     183 ..      89     196 .. 0.51

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.9e-06
    TIGR01628 103 kaLfdtFskfGnilsckvatdeeGk...SkgYgfvhfedeesAkeAieklNgvllndkevyvgkf 164
                  k +++  skfG + +c v  + +G        +fv fe++esA +A   + g   + +++  + f
  MMETSP1174-20130828|12062_1 120 KEVQEECSKFGPVRTCVVY-ELKGAppdQAVRTFVAFEKQESAIKAFLDMEGRFFAGRQIRCAFF 183
                  3344444555555555333.223321112233455555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 761.77
//
Query:       MMETSP1174-20130828|12064_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1155.71
//
Query:       MMETSP1174-20130828|12065_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.44
# Mc/sec: 95.99
//
Query:       MMETSP1174-20130828|12069_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 175.14
//
Query:       MMETSP1174-20130828|12067_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1394.13
//
Query:       MMETSP1174-20130828|12066_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1636.66
//
Query:       MMETSP1174-20130828|12070_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1404.50
//
Query:       MMETSP1174-20130828|12068_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-34  115.2   0.0    2.5e-24   83.8   0.0    2.1  2  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    4.2e-29   99.5   0.0    8.7e-19   65.5   0.0    2.7  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
      4e-26   89.6   0.0    2.3e-18   64.0   0.0    3.1  3  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.5e-23   79.9   0.0      3e-22   76.8   0.0    2.0  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    3.5e-20   70.0   0.0    6.1e-18   62.7   0.0    2.7  2  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    2.5e-17   60.7   0.0    6.5e-14   49.5   0.0    2.5  3  TIGR03537 DapC: succinyldiaminopimelate transaminase
      9e-17   58.8   0.0      1e-15   55.3   0.0    1.9  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.2e-16   58.6   0.0    1.7e-12   44.9   0.0    3.8  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    9.2e-15   52.4   0.0    9.7e-11   39.2   0.0    2.2  2  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    8.5e-08   28.8   0.0    1.2e-05   21.7   0.0    2.3  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
     0.0085   12.8   0.0       0.18    8.4   0.0    2.5  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
  ------ inclusion threshold ------
      0.031   10.7   0.0      0.056    9.9   0.0    1.4  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   7.5e-27   2.5e-24      61     218 ..      32     196 ..       9     205 .. 0.90
   2 !   29.3   0.0   2.7e-10   9.2e-08     233     398 ..     241     424 ..     224     429 .. 0.76

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 7.5e-27
    TIGR01265  61 vrsgkfngYapsvGvlaareavaeylskeleaklea.ddvvltsGcsqaielviealanaganiLvPrPgfplYetlakalglevrkydllp.....ekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaekl.klliiaDEvYdklvfgd 218
                  + s++   Y+  +G++   + +ae++s++l  ++++  +v +t Gcsqa+ + ++ l ++g+++++  P f lY  + ++ g   r   l p      + w++d+d lea +  kt alv++ P nP+G vf+ d ++ +++v +k  ++++++DEvY+ +v+g+
  MMETSP1174-20130828|12068_1  32 AISKDCHQYTRPAGHPPLVNLLAERYSSHLGRTIDPmAEVAVTVGCSQALYVSMQCLVKPGDEVVLFEPFFDLYLGQISMAGGSPRFVPLKPappssSSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWpRIVVVSDEVYKYTVHGG 196
                  45889999**************************97479**************************************99999998888886522333579*********************************************9758************9987 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 2.7e-10
    TIGR01265 233 vlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpk......effekkikvlkenaelvyeelkeipgltcvkPegamyllvklel............elleeikdDvdFceklvkEesvillPgs.alele......nylRitltveksvleealeRikeF 398
                   l+l +  k + v GW++GW+i   p   l+d  +q++  +lq    ++t +q+Al ++l+++++      +++     + k+ a l+ ++l++   l   k eg  +l v+++              ++e +  D  Fc  l+ E+ v  +P    ++le       y+R ++    ++le a+eR+++ 
  MMETSP1174-20130828|12068_1 241 TLTLSSAGKTFAVTGWQVGWII--GPARLLTD--VQTVLPFLQFC--ASTPMQQALVEVLSQADEpyggfdNYYLWLSAIYKRKAALLSRALEA-ANLPILKSEGGYFLTVDVSAvdvpqryldeesPAIEAVTRDWAFCRWLALEHGVLAIPVApFFSLEsrskvgSYVRFAFCKTDATLERAAERLRKL 424
                  58999***************99..58889999..78888888876..56889***********9833333245555667778899999888865.6788999********9987522222111111124566889******************762455442222337********************986 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   2.5e-21   8.7e-19      27     209 ..       5     192 ..       1     199 [. 0.90
   2 !   30.5   0.0   1.1e-10   3.8e-08     219     329 ..     231     348 ..     220     424 .. 0.71

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 2.5e-21
    TIGR03540  27 kGvdvidlgiGdPdlptpkeivealkkaaekpenhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllaggepyelPlke.....endflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakey.niivvhdaaysei 209
                   G  v++lg G Pd + p+ +  a+++a++  + h+y   +G   + + +a+ y ++ g ++dp  ev   +G  + +   + ++v+pGd v++ +P +  y   + +agg+p  +Plk         +  d+da+++ +  k+  l ln P nPt+ v + + +k + ++ ++   i+vv+d+ y   
  MMETSP1174-20130828|12068_1   5 LGDSVVNLGQGFPDFAPPDFVRVAAYTAIS-KDCHQYTRPAGHPPLVNLLAERYSSHLGRTIDPMAEVAVTVGCSQALYVSMQCLVKPGDEVVLFEPFFDLYLGQISMAGGSPRFVPLKPappssSSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWpRIVVVSDEVYKYT 192
                  5889***********999887777766665.689************************************************************************************962222256788899**************************************999647999****99755 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 1.1e-10
    TIGR03540 219 flevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeee.......vvkelrkvykkrrdllvealkkiGldvkkpkatfylWvkvPe 329
                  f +++g  d ++ l+s  kt+++tGW++g+ +G + l++ +++v   +   + +++q+a ++ l++ +e           l ++yk++ +ll  al+   l + k+++ ++l v v +
  MMETSP1174-20130828|12068_1 231 FASLPGMFDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPFLQFCASTPMQQALVEVLSQADEpyggfdnYYLWLSAIYKRKAALLSRALEAANLPILKSEGGYFLTVDVSA 348
                  667788999999****************************************************9988622211113445689****************************9887632 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   6.8e-21   2.3e-18      68     174 ..      67     178 ..      40     204 .. 0.79
   2 !   17.9   0.0   7.4e-07   0.00025     199     247 ..     236     284 ..     218     301 .. 0.77
   3 ?    4.0   0.0     0.012       4.2     308     351 ..     367     417 ..     356     424 .. 0.66

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 6.8e-21
    TIGR03947  68 daekvlvthGsseaiylvltallrPGdevvvvdpayh.slselavalg....akvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaes 174
                  +  +v vt+G s+a+y+ ++ l++PGdevv+ +p ++  l+++++a g    + +++ p ++++ +  d+d+l+a + ++t ++v+n PhnPtG   ++ e +++ +++ + 
  MMETSP1174-20130828|12068_1  67 PMAEVAVTVGCSQALYVSMQCLVKPGDEVVLFEPFFDlYLGQISMAGGsprfVPLKPAPPSSSSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKW 178
                  56789******************************9834777777766222245666677778999***************************************9998775 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 7.4e-07
    TIGR03947 199 aaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsP 247
                     dr+++ +   k+f ++G +vGW ++P+ ll+++  +  +l +  s 
  MMETSP1174-20130828|12068_1 236 GMFDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPFLQFCAST 284
                  5689*******************************99998888776653 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.012
    TIGR03947 308 advtdlCerllarhgvlvvPGscfGaadr.......vrlGfggssaeleaG 351
                  +   ++C+ l+ +hgvl +P + f + ++       vr+ f    a+le+ 
  MMETSP1174-20130828|12068_1 367 TRDWAFCRWLALEHGVLAIPVAPFFSLESrskvgsyVRFAFCKTDATLERA 417
                  45568***************9877543322334444566666666666555 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   8.7e-25     3e-22      63     397 ..      34     423 ..      18     428 .. 0.80

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 8.7e-25
    TIGR01264  63 sgkynGyaptvGaleareaiaeyyankradgele.addvvlasGcshalelaiealadaGenvlvPrPGfplyetlakaldievklynl.....ladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerl.klpiladeiyedlvfkg.............................atflalaslssevP.ilslgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktPq......eyfdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel....ekfke........lksdvefveklveeesvfvlPgsif.......elPgylrvvltvpkavleeavsrike 397
                  s++   y+   G++   + +ae+y+  ++  +++   +v ++ Gcs+al ++++ l+++G++v++ +P f ly       + + ++  l      +   w++d++ le+ i  kt al++n P nP+G vf+ + ++ + a++++  ++++++de+y+  v+ g                             a ++  asl       l+l    k + v GW++GW+i   +   l+dv+  l  l      ++t +q al e+l ++ +      +y+  +  + + +a l+ +al +   l   k +G  +l v+++     +++ +        +  d  f++ l  e+ v  +P + f       ++ +y+r       a+le a++r+++
  MMETSP1174-20130828|12068_1  34 SKDCHQYTRPAGHPPLVNLLAERYS-SHLGRTIDpMAEVAVTVGCSQALYVSMQCLVKPGDEVVLFEPFFDLYLGQISMAGGSPRFVPLkpappSSSSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWpRIVVVSDEVYKYTVHGGgdvddtanggesgdieksgvksssasetaAGHHHFASLPGMFDrTLTLSSAGKTFAVTGWQVGWIIG--PARLLTDVQTVLPFLQ---FCASTPMQQALVEVLSQADEpyggfdNYYLWLSAIYKRKAALLSRALEA-ANLPILKSEGGYFLTVDVSAvdvpQRYLDeespaieaVTRDWAFCRWLALEHGVLAIPVAPFfslesrsKVGSYVRFAFCKTDATLERAAERLRK 423
                  6677789999999999999***999.555666652689***********************************98776666555555551111156789*******************************************998648999***********9999*********************9999988899999999887625899999*************995..6668999998877664...446677899******9986522222256666777889999999999965.67999***********9987233333432222222225678899999999999999997655333333335679999999999999999999886 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.8e-20   6.1e-18      30     209 ..       8     190 ..       2     196 .. 0.85
   2 !    4.2   0.0      0.01       3.4     234     333 ..     238     346 ..     225     425 .. 0.64

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.8e-20
    TIGR03538  30 eeialsiGePkhatPafvlealve.nleelskyPttkGlpelreaiaeWlerrfelpag..vdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaepyflnctae.....ngfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkyd.fiiasdecys 209
                  + ++l  G P  a+P+fv  a  +   ++  +y   +G+p l + +a     r++ + g  +dp  +v    G  +al+  +q+++++ ++  vvl +Pf+ +y G   +ag+ p f++ +++     + +  d da+++ +  ++  l ++sP+nPtG+v++ +e+k++ ++ +k+   ++ sde y 
  MMETSP1174-20130828|12068_1   8 SVVNLGQGFPDFAPPDFVRVAAYTaISKDCHQYTRPAGHPPLVNLLA----ERYSSHLGrtIDPMAEVAVTVGCSQALYVSMQCLVKPGDE--VVLFEPFFDLYLGQISMAGGSPRFVPLKPAppsssSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWPrIVVVSDEVYK 190
                  5689999***********87665505577999********9876655....6776666666*************************99875..88899********************98764111115677799********9999999**************************9626789***995 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.01
    TIGR03538 234 fkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrtyhGcampiavqla..siaaWedekhv.ren.....ralyrekfaavleilg.avldlelPdasfylWlkv 333
                  f r l+++s  k   v G + G++ G a ll++      +   + + ++q+a   +    de +   +n      a y++k a +   l+ a l++ + +++++l + v
  MMETSP1174-20130828|12068_1 238 FDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPFLQFCASTPMQQAlvEVLSQADEPYGgFDNyylwlSAIYKRKAALLSRALEaANLPILKSEGGYFLTVDV 346
                  6788888899999999999999999999999888777666544444444444114445567654313332222246677777777766641457777777777777666 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.9e-16   6.5e-14       4     179 ..      11     190 ..       8     197 .. 0.91
   2 !    8.4   0.0   0.00056      0.19     195     304 ..     238     355 ..     224     375 .. 0.82
   3 ?   -2.3   0.0         1   3.5e+02     199     233 ..     388     423 ..     376     433 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.9e-16
    TIGR03537   4 dfGtGdpkeptddfirkalldavp.evsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkk.....edgflleldaveeailretkivwinyphnptGaeapasylkevaelarey.giilasdecya 179
                  ++G G p    +df+r a   a+  +  qy   +G+  l + +a+      g ++dp aev  + G+ +a++     +++p     +v++ +p +  y     +agg +  v lk+      + + l++da+e ai  +t  + +n phnptG   + + +k +a+++r++  i+++sde y 
  MMETSP1174-20130828|12068_1  11 NLGQGFPDFAPPDFVRVAAYTAISkDCHQYTRPAGHPPLVNLLAERYSSHLGRTIDPMAEVAVTVGCSQALYVSMQCLVKPG---DEVVLFEPFFDLYLGQISMAGGSPRFVPLKPappssSSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWpRIVVVSDEVYK 190
                  7899****************99973689*******************************************99888888854...579999***********************962222257899********************************************9458899****96 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00056
    TIGR03537 195 lenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataawsd........dahvaerrkifkrkrdlfleflakkGlealasdatfylwvkvpegidaksy 304
                   +++l++ s  k   +tG++ g + G ++l++ ++ + + +  +  + +q+a     s+        d++ ++   i+krk  l+ + l+ + l +l+s+  ++l v v +    + y
  MMETSP1174-20130828|12068_1 238 FDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPFLQFCASTPMQQALVEVLSQadepyggfDNYYLWLSAIYKRKAALLSRALEAANLPILKSEGGYFLTVDVSAVDVPQRY 355
                  6899****************************999998877776666666665444332112333338999***********************************999877555555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1
    TIGR03537 199 lafhslskrsGmtGy.rsgflaGdeelvsalrklra 233
                    f+sl  rs +  y r +f   d++l +a ++lr 
  MMETSP1174-20130828|12068_1 388 APFFSLESRSKVGSYvRFAFCKTDATLERAAERLRK 423
                  458899999999888788999999999888877775 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.1e-18     1e-15      32     302 ..      19     349 ..       2     361 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 3.1e-18
    TIGR01141  32 fgpsekvkealkeelk.klhrYpdpqa.lelkealakylg.......veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked.......gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e..dalVVvDeAYieFsee..................................asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvra..pynvsslaleaavaalrdsd........kiektveevkkererlleelkkleglevyeSkaN.Fvlikvkedae 302
                  f+p++ v+ a+  +++ + h+Y  p +   l + la++++         ++++++++G  +++ + ++ +++pgd+v+ +ep + +Y    ++ag + + vplk         +  d +a+++a+  k+    l sP+nPtG++++ +e++++++ v +  + +VV De Y  ++ +                                   ++++l   ++  ++l +  K f+  g  vG  i+ a +   ++ v +   +  s++ ++a v+ l+++d        ++    +  k++ + l  +l++  +l + +S++  F++++v+  a 
  MMETSP1174-20130828|12068_1  19 FAPPDFVRVAAYTAISkDCHQYTRPAGhPPLVNLLAERYSshlgrtiDPMAEVAVTVGCSQALYVSMQCLVKPGDEVVLFEPFFDLYLGQISMAGGSPRFVPLKPAppssssaWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVrKwpRIVVVSDEVYK-YTVHgggdvddtanggesgdieksgvksssasetaaghHHFASLPGMFDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPflQFCASTPMQQALVEVLSQADepyggfdnYYLWLSAIYKRKAALLSRALEAA-NLPILKSEGGyFLTVDVS--AV 349
                  7778888888888887789999998752578888888888888898545689***************************************************9988888899999*************999***********************99845777788899996.4444488999************************999999999999**************************************86337999************99987777766344444444555555555555555.799999976515666665..44 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0     5e-15   1.7e-12      17     302 ..       3     342 ..       1     350 [. 0.72
   2 !    5.3   0.0    0.0053       1.8     311     357 .]     370     422 ..     362     422 .. 0.75

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 5e-15
    TIGR03539  17 ashpdGivdlsvGtPvdpvpalirealae..aadapgyPqtaGteelreaivdalerrlgvkgld.eeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaea.................vaaddlte.ldpekvkliwlnsPanPtGrvlsveelrkvvalarer.gvvvasdecylelgWege...........................avsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaalad........dehvaeqkeryaarrellkaalekaGfriehseaglyl 302
                  as  d +v+l  G P  + p+ +r a  +  + d + y + aG + l + +++    +lg + +d  ++v  ++G  +++  + ++  +++gd+vv  e  +  y    ++ag ++                 + +d+l+  ++p++   + lnsP nPtG+v + +e++++ a+ r+   +vv+sde y   +  g                            a    +     g ++  l++ s  k+  ++g++ g++ G + l++++ +v     +  ++P+q+a+v+ l++        d+  +   + y+++ +ll +ale+a + i +se+g +l
  MMETSP1174-20130828|12068_1   3 ASLGDSVVNLGQGFPDFAPPDFVRVAAYTaiSKDCHQYTRPAGHPPLVNLLAERYSSHLGRT-IDpMAEVAVTVGCSQALY-VSMQCLVKPGDEVVLFEPFFDLYLGQISMAGGSPrfvplkpappssssawdLDIDALEAaIGPKTC-ALVLNSPHNPTGKVFTPDEMKAIAAVVRKWpRIVVVSDEVYKYTVHGGGdvddtanggesgdieksgvksssasetAAGHHHFASLPGMFDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLPFLQFCASTPMQQALVEVLSQadepyggfDNYYLWLSAIYKRKAALLSRALEAANLPILKSEGGYFL 342
                  56678888888888888888888876543115688888888888888888888888877766.553677778888777664.455556888888888888888888777888754321111111111111111333444321344444.5569**********************9996268999*****98877665688999*********9998755544322223333344567778899*************************************************99872122222223345567789999999******************998 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0053
    TIGR03539 311 retvdrla.elGilvaPGd.fyg....eagkefvrvaltatderiaaaverlt 357
                  ++  ++la e+G+l+ P   f++    ++  ++vr a+  td  ++ a+erl+
  MMETSP1174-20130828|12068_1 370 WAFCRWLAlEHGVLAIPVApFFSlesrSKVGSYVRFAFCKTDATLERAAERLR 422
                  566677776899999885437762222344579******************95 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.8e-13   9.7e-11      64     172 ..      67     193 ..       6     205 .. 0.81
   2 !   11.2   0.0   9.4e-05     0.032     176     222 ..     230     276 ..     222     356 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 2.8e-13
    TIGR01140  64 daesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels..............dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkarggllvv.DEAFidft 172
                  + ++v ++ G  +a+++ ++ l++p+++ ++++p +  y  ++++ag ++++++              d+++l+a++  ++ +lv+  P+NPtG++++++e++a+a+ +++   ++vv DE + +++
  MMETSP1174-20130828|12068_1  67 PMAEVAVTVGCSQALYVsMQCLVKPGDEvVLFEPFFDLYLGQISMAGGSPRFVPlkpappssssawdlDIDALEAAIgPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWPRIVVVsDEVYKYTV 193
                  378999999*9999999566678888875889******************************************99977777888999*********************998777666588886665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 9.4e-05
    TIGR01140 176 slaalaealpglvVlrSltKffglaGlRlGfvvAepallerlkealg 222
                  ++a+l+  +++ + l S +K+f++ G  +G++++++ ll+ ++++l+
  MMETSP1174-20130828|12068_1 230 HFASLPGMFDRTLTLSSAGKTFAVTGWQVGWIIGPARLLTDVQTVLP 276
                  77888888999*****************************9999876 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.5e-08   1.2e-05     178     285 ..      86     190 ..      72     195 .. 0.92
   2 !    4.5   0.0    0.0059         2     289     322 ..     229     261 ..     225     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.5e-08
    TIGR03801 178 neLlkkgDkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkelekLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvyg 285
                  + L+k gD++ l  P f  yl   +++    + v +k  + ++  +++w    + le    pk  al++  P nP++   +++ ++ +a++v++  p +++++D+vy 
  MMETSP1174-20130828|12068_1  86 QCLVKPGDEVVLFEPFFDLYLGQISMAGGSPRFVPLKPAPPSS--SSAWDLDIDALEAAIGPKTCALVLNSPHNPTGKVFTPDEMKAIAAVVRK-WPRIVVVSDEVYK 190
                  5799******************999*99999999999777666..799********************************************98.9***********6 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0059
    TIGR03801 289 ddfrsllaelpantilvysfskyfgatGWrlgvi 322
                  ++f sl ++    t+++ s  k f +tGW++g i
  MMETSP1174-20130828|12068_1 229 HHFASLPGMF-DRTLTLSSAGKTFAVTGWQVGWI 261
                  5677766655.56999***************976 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00054      0.18     173     216 ..     146     190 ..      22     195 .. 0.61
   2 ?    1.3   0.0      0.08        27     241     333 ..     244     334 ..     234     357 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00054
    TIGR03542 173 kvdiiylCsPnnPtGtvltkeqlkelvdyakend.slilfdaaye 216
                  k+  ++l sP nPtG v t +++k++    ++   ++++ d  y+
  MMETSP1174-20130828|12068_1 146 KTCALVLNSPHNPTGKVFTPDEMKAIAAVVRKWPrIVVVSDEVYK 190
                  45568899*****************99888775414455566665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.08
    TIGR03542 241 irsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaaglkvy 333
                  + s  kt   tG ++g+ + P  l  +d +++    +   +t +  a + v   a+  + + +      +++ y+++a +l +aleaa+l + 
  MMETSP1174-20130828|12068_1 244 LSSAGKTFAVTGWQVGWIIGPARLL-TDVQTVLPFLQFCASTPMQQALVEVLSQADEPYGGFDNY-YLWLSAIYKRKAALLSRALEAANLPIL 334
                  6677888888899999988888887.555556566666666666665555554455555444433.345667788888888888888877665 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00016     0.056      80     168 ..      79     178 ..      27     194 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00016
    TIGR01325  80 aailaallallsaGdhvvasrslfGstvvlvsei..lkrfG.vevsfvdat.....dlkaWeaalkantkllfletPsnPlaelv...diaalaelahav 168
                   a++ ++ +l++ Gd+vv    +f   +  +s     +rf  ++ + ++++     d++a eaa+ ++t +l+l++P nP  ++    +++a+a +    
  MMETSP1174-20130828|12068_1  79 QALYVSMQCLVKPGDEVVLFEPFFDLYLGQISMAggSPRFVpLKPAPPSSSsawdlDIDALEAAIGPKTCALVLNSPHNPTGKVFtpdEMKAIAAVVRKW 178
                  4667777777777777777777776666555543224555312222111112222278899*******************99986333466666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.64
# Mc/sec: 973.42
//
Query:       MMETSP1174-20130828|12071_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-05   19.4   0.3     0.0001   18.9   0.2    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0052   12.5   0.1     0.0061   12.3   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   4.9e-08    0.0001     119     217 ..      91     193 ..      74     197 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.9e-08
    TIGR00990 119 seeerkkyaaklkekGnkayrnkdfdkaie.lyskalllkedPvyys...nraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl 217
                  s +e+ + a +l+e+G   +++ ++  a   + ++        +y s   n + cy  + ++++      + le++ d  kal rr  +  ++g  ++a  dl
  MMETSP1174-20130828|12071_1  91 SSQEKIEAAKALREEGSAEFKKNKWALAASsILDRDENDAALEIYVSclgNASLCYIKVLQWDEAASTCSKVLEMKGDNFKALYRRGLSRFRMGMLKEAKADL 193
                  6778889999999999999999999866431333322222223444333399**********************************98888888888887776 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     3e-06    0.0061     117     222 ..      91     199 ..      50     202 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3e-06
    TIGR02917 117 sslddeeaaellalrglAaLglgeleeAqksleqAlaiapk.sle.aklglAqlalaen.kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaiel 222
                  ss+++ eaa++l   g A++++ + ++A +s+ +  + +++ +++ + lg A l   +  + dea    ++vL+ + +n +Al  +g   +  g  +eA a++ k  +l
  MMETSP1174-20130828|12071_1  91 SSQEKIEAAKALREEGSAEFKKNKWALAASSILDRDENDAAlEIYvSCLGNASLCYIKVlQWDEAASTCSKVLEMKGDNFKALYRRGLSRFRMGMLKEAKADLMKTHKL 199
                  4566777788888888888888888888777776655444313332567777777666557888888888888888888888888887777777777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 765.54
//
Query:       MMETSP1174-20130828|12074_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-11   39.5   6.8      2e-06   23.8   0.0    3.1  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.1e-10   39.3   3.8    0.00017   19.0   0.0    3.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.3e-09   35.8   4.2    0.00047   17.7   0.1    3.5  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.3e-07   26.7   2.1    5.3e-05   19.8   0.0    3.1  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.2e-05   23.7   6.9     0.0062   15.0   0.0    4.9  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
        1.3    7.2  10.6       0.12   10.5   0.2    4.5  5  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.7      0.02        14     512     557 ..      14      61 ..      10      78 .. 0.52
   2 !   23.8   0.0   2.9e-09     2e-06     176     291 ..     116     232 ..     109     258 .. 0.86
   3 !   15.8   0.1   7.5e-07   0.00051     546     640 ..     304     401 ..     287     409 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.02
    TIGR02917 512 ekniddAkqrfekvlaidpknlkallaLaelaark..gneeeavalle 557
                  ekn ++A q fe++l  dp    + ++L +++ +    + ++a+a+l 
  MMETSP1174-20130828|12074_1  14 EKNFEEALQLFEEMLMDDPDLTSVANNLKQVKTAMkyRDLQNATAMLR 61 
                  556666666666666666666666666655554433233334444443 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2.9e-09
    TIGR02917 176 dearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnsp.kaaylkAlvdfqkkkfedAretlqaalksa 291
                   ea +  + +L+++p+ ++A++ +g+  l  ++   A++ ++ a++++ + + al+ ++t l ++++ e+Ae+ a+ l++          y+++  ++  +k+++A + +++a +++
  MMETSP1174-20130828|12074_1 116 PEAVQYFEVALEEKPDCIEAMNNLGQASLGMKKWIDAVEYFDMALAINSQLSTALFGKITCLQHLKRWEAAEASATSLIETLGDTDfRPWYIRGSAKYALQKYAEAANDITKARQIG 232
                  5788999999********************************************************************99987655156899************9999998876654 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 7.5e-07
    TIGR02917 546 kgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapds..pellellgraqlaakdlkkavesfkklle.lqpdsalalll 640
                  + ++e+av+++++++e++p+    + +L+q  l   +   a++ le a++ ++ +  + ll  lg a+ + +dl++ +++fk +l+  +pd+ +a l 
  MMETSP1174-20130828|12074_1 304 NEEPEKAVEVMQALVEENPDFRGARESLGQLALLMEDYSLAISSLEVALAGQKGPsrADLLYDLGVAYFKMSDLESSKSCFKRVLKdMNPDHEEAILA 401
                  35677778888888888888888888888888888888888888877777775440044455577888888888888888877665357777777665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.7   0.00053      0.36     138     193 ..       2      61 ..       1      77 [. 0.77
   2 !   19.0   0.0   2.5e-07   0.00017      83     230 ..     117     264 ..     114     267 .. 0.84
   3 !   10.9   0.0   7.8e-05     0.053     112     177 ..     338     404 ..     289     410 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00053
    TIGR02521 138 yeNaglca..lkagdtekaekyltralkidpkrpesllelae..lklkkgqyaeAralle 193
                  y+Na  c    +++++e+a + +++ l  dp+     ++l++  + +k +++++A+a+l 
  MMETSP1174-20130828|12074_1   2 YKNAKACCvwQHEKNFEEALQLFEEMLMDDPDLTSVANNLKQvkTAMKYRDLQNATAMLR 61 
                  677766652257899****************98887777765115689999999999986 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.5e-07
    TIGR02521  83 kAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpk...rpesllelaelklkkgqyaeAralleryqqtv.eqtaesLwLgiriakalgdaaaakeyeaqLq 230
                  +A ++f+ Al+ kp+  +++NN G     +kk  +A ++f+ A++ +   q + ++  +++c+ ++++ e ae++ t +++   +   rp  ++     k+  ++yaeA + + +  q    + ++ L +   + ka  ++a++  +++qL 
  MMETSP1174-20130828|12074_1 117 EAVQYFEVALEEKPDCIEAMNNLGQASLGMKKWIDAVEYFDMALAIN--SQLSTALFGKITCLQHLKRWEAAEASATSLIETLGDtdfRPWYIR--GSAKYALQKYAEAANDITKARQIGgLPPKQILGIEKTLIKARSQQAKEVLFGQQLT 264
                  6899****************************************998..588999******************998888876443111444444..45588999999999999999999955666778899999999999999999999987 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 7.8e-05
    TIGR02521 112 qkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralk.idpkrpesllelae 177
                  + +y  A+  +e A++ +k +++a+ +  +g+ + k  d e  ++ ++r lk ++p+  e++l+l  
  MMETSP1174-20130828|12074_1 338 MEDYSLAISSLEVALAGQKGPSRADLLYDLGVAYFKMSDLESSKSCFKRVLKdMNPDHEEAILALEV 404
                  568999*******************************************996489999999998865 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.04        27      61     102 ..      10      51 ..       3      76 .. 0.70
   2 !   17.7   0.1   6.8e-07   0.00047      29     119 ..     144     235 ..     117     245 .. 0.88
   3 !   15.2   0.0   4.1e-06    0.0028      35     128 ..     308     403 ..     293     410 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.04
    TIGR02552  61 clqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgek 102
                  ++q  k++eeA++ ++  ++ d+d  ++   + ++++a++ +
  MMETSP1174-20130828|12074_1  10 VWQHEKNFEEALQLFEEMLMDDPDLTSVANNLKQVKTAMKYR 51 
                  578999999999999999998888877777777777666644 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.8e-07
    TIGR02552  29 yqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeA.iaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                     +k+ +A++ F +  a++ + +  ++g   clq lk++e A + a +l+ +l   d rp y ++  ++al++++eA +++  a +i +  
  MMETSP1174-20130828|12074_1 144 LGMKKWIDAVEYFDMALAINSQLSTALFGKITCLQHLKRWEAAeASATSLIETLGDTDFRPWYIRGSAKYALQKYAEAANDITKARQIGGLP 235
                  5568999***********************************944578999******************************99998887755 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 4.1e-06
    TIGR02552  35 eeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaald..lddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselker 128
                  e+A+++ q+L+  +p       +L+     +++y+ Ai   ++a+a +  ++ ++ +y +++ ++++ + e++++++k++++  + + e ++l  +
  MMETSP1174-20130828|12074_1 308 EKAVEVMQALVEENPDFRGARESLGQLALLMEDYSLAISSLEVALAGQkgPSRADLLYDLGVAYFKMSDLESSKSCFKRVLKDMNPDHEEAILALE 403
                  567777788888888888888899*****************999998866899999************************9988877777776655 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.5     0.012       8.1     513     552 ..       6      45 ..       4      78 .. 0.81
   2 !   19.8   0.0   7.8e-08   5.3e-05     119     252 ..     125     259 ..     115     293 .. 0.85
   3 ?    1.4   0.0      0.03        20     435     463 ..     363     391 ..     291     398 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.012
    TIGR00990 513 kalalfrtkedfieaekllekalildPesdiavitlaqll 552
                  ka  + +  ++f ea +l e  l+ dP+       l q++
  MMETSP1174-20130828|12074_1   6 KACCVWQHEKNFEEALQLFEEMLMDDPDLTSVANNLKQVK 45 
                  88999999*******************9888888888876 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 7.8e-08
    TIGR00990 119 seeerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaale.ldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeile 252
                  + ee+ +   ++ ++G    + k++ +a+e+++ al +          + +c + l  +e   + +t  +e l +   +    r +a   l kya+a  d+t    i+++  +q+   +e+ l k   ++ake+l 
  MMETSP1174-20130828|12074_1 125 ALEEKPDCIEAMNNLGQASLGMKKWIDAVEYFDMALAINSQlSTALFGKITCLQHLKRWEAAEASATSLIEtLGDTDFRPWYIRGSAKYALQKYAEAANDITKARQIGGLPPKQIL-GIEKTLIKARSQQAKEVLF 259
                  5678888888999**********************9998762345567889**********999999988746666678888899999************************9997.58**************984 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.03
    TIGR00990 435 syiqlavlqyklgsiassealfrrakkkf 463
                      l+v  +k++ ++ss++ f+r+ k++
  MMETSP1174-20130828|12074_1 363 LLYDLGVAYFKMSDLESSKSCFKRVLKDM 391
                  45689*******************99976 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.018        12      51      99 ..      13      60 ..       6      76 .. 0.78
   2 ?    1.4   0.0      0.15     1e+02      41     103 ..     135     194 ..     116     201 .. 0.77
   3 ?    1.0   0.1       0.2   1.3e+02      43      61 ..     206     224 ..     203     231 .. 0.85
   4 !    5.9   0.0    0.0058         4      38      87 ..     290     339 ..     288     342 .. 0.93
   5 !   15.0   0.0   9.1e-06    0.0062      20     105 ..     309     390 ..     308     403 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.018
    TIGR02795 51 akkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktl 99
                  +k++++A + f+e++ ++p+ + ++++l k+ + + + ++ ++A ++l
  MMETSP1174-20130828|12074_1 13 HEKNFEEALQLFEEMLMDDPDLTSVANNL-KQVKTAMKYRDLQNATAML 60
                 67899999999999999999999999886.5555555666666666666 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.15
    TIGR02795  41 AqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevi 103
                  A   lG+a +  kk  dA ++f  +++    +++ + al+   ++lq+l+++e+A +  + +i
  MMETSP1174-20130828|12074_1 135 AMNNLGQASLGMKKWIDAVEYFDMALA---INSQLSTALFGKITCLQHLKRWEAAEASATSLI 194
                  555689999999999999999999888...445566778888888888888888887766665 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.2
    TIGR02795  43 YwlGealyakkkykdAaka 61 
                  Y +G a ya +ky++Aa+ 
  MMETSP1174-20130828|12074_1 206 YIRGSAKYALQKYAEAAND 224
                  8899999******999976 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0058
    TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslq 87 
                  ++nA ++ + al  +++ ++A +  +++v+++p+   a ++l +l+ +++
  MMETSP1174-20130828|12074_1 290 KGNATFFKALALNVNEEPEKAVEVMQALVEENPDFRGARESLGQLALLME 339
                  68*************************************99999999887 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 9.1e-06
    TIGR02795  20 kAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikr 105
                  kA + ++a ++++P+ + a ++   lG++ +  ++y+ A+ + + +++  +k++ ++d l+ lg+++ ++ + e++k+ +++v k+
  MMETSP1174-20130828|12074_1 309 KAVEVMQALVEENPDFRGARES---LGQLALLMEDYSLAISSLEVALA-GQKGPSRADLLYDLGVAYFKMSDLESSKSCFKRVLKD 390
                  6778888888888888776665...9****************999888.7899******************************986 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00017      0.12      13      27 ..      14      28 ..      12      31 .. 0.87
   2 ?   -1.3   0.0      0.98   6.7e+02       9      25 ..      58      74 ..      57      79 .. 0.81
   3 ?   -1.3   0.0      0.96   6.6e+02      14      29 ..     305     320 ..     301     321 .. 0.80
   4 ?   -1.0   0.1      0.77   5.2e+02       9      26 ..     370     387 ..     370     390 .. 0.86
   5 ?   -2.6   0.1       2.4   1.7e+03      20      30 ..     459     469 ..     454     470 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00017
    TIGR00756 13 agrveeAlelfdeMk 27
                 ++++eeAl+lf+eM+
  MMETSP1174-20130828|12074_1 14 EKNFEEALQLFEEML 28
                 79************7 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.98
    TIGR00756  9 glckagrveeAlelfde 25
                 ++ +a +++eA+e +++
  MMETSP1174-20130828|12074_1 58 AMLRAQKLKEAEEALRK 74
                 56799999999998876 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.96
    TIGR00756  14 grveeAlelfdeMker 29 
                   ++e+A+e+++ ++e+
  MMETSP1174-20130828|12074_1 305 EEPEKAVEVMQALVEE 320
                  5799*****9877765 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.77
    TIGR00756   9 glckagrveeAlelfdeM 26 
                  +++k  ++e  +++f++ 
  MMETSP1174-20130828|12074_1 370 AYFKMSDLESSKSCFKRV 387
                  699************986 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 2.4
    TIGR00756  20 lelfdeMkerg 30 
                   ++ ++M++ g
  MMETSP1174-20130828|12074_1 459 DDMIEKMMRTG 469
                  57888998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 1521.92
//
Query:       MMETSP1174-20130828|12077_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1045.76
//
Query:       MMETSP1174-20130828|12073_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1310.23
//
Query:       MMETSP1174-20130828|12079_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 846.55
//
Query:       MMETSP1174-20130828|12080_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1207.31
//
Query:       MMETSP1174-20130828|12083_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1102.29
//
Query:       MMETSP1174-20130828|12081_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|12086_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|12089_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 233.98
//
Query:       MMETSP1174-20130828|12088_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   12.0   0.0      0.052   11.5   0.0    1.2  1  TIGR02373 photo_yellow: photoactive yellow protein
      0.037   12.6   0.0      0.044   12.3   0.0    1.2  1  TIGR02747 TraV: type IV conjugative transfer system protein TraV


Domain annotation for each model (and alignments):
>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.5e-05     0.052      44      85 ..      54      97 ..      43     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.5e-05
    TIGR02373 44 aegelaGrdPekviGknffkev..aPctdskefsGrfkegvasG 85
                 a ge +Gr+Pe v+ +    ++  aP +d+ ++sG   e+ +s 
  MMETSP1174-20130828|12088_1 54 ARGETTGRHPEPVLARVGVADIlvAPRADAANYSGAVDEYHSSS 97
                 78999**************995449**********998887665 PP

>> TIGR02747  TraV: type IV conjugative transfer system protein TraV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.044      76     128 ..       7      85 ..       1     101 [. 0.72

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
    TIGR02747  76 vtlakaktvaakks..lqktpaikplvaker........................epkPlrtqekvaklwiaPYideeg 128
                  v l k+kt++++++  +q+ +++   ++k+r                        +p+P++ +  va + +aP  d  +
  MMETSP1174-20130828|12088_1   7 VDLRKSKTKKSEAKggAQPVTGPSDTMVKARlfdcfsraydxvqgalargettgrHPEPVLARVGVADILVAPRADAAN 85 
                  5555566666555511566777777777777888888888888888888888888******************766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|12090_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 955.92
//
Query:       MMETSP1174-20130828|12097_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 580.75
//
Query:       MMETSP1174-20130828|12096_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-10   36.4   0.0    2.7e-05   21.6   0.0    2.3  2  TIGR00633 xth: exodeoxyribonuclease III (xth)
    2.3e-05   21.9   0.0       0.02   12.4   0.0    2.4  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.8e-06     0.018       2      77 ..       3      85 ..       2      96 .. 0.73
   2 !   21.6   0.0   1.3e-08   2.7e-05     140     254 ..     164     287 ..     139     288 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.8e-06
    TIGR00633  2 kiiswNvnglrarlkkl.......flellkeekpDvlclQEtKvae..eqlpkelleeegYevafssakkkgysGvallskeepe 77
                 +++++Nv  ++a   +        fl+ l +  pD+++l E+ ++   e l   + +  gY+vaf +    g +G alls+++  
  MMETSP1174-20130828|12096_1  3 RFVTHNVRRFKASDGSStvpaigrFLAEL-QPPPDIVALNEVDISTqpECLDSLASMLGGYSVAFFGHV-AGRYGNALLSRHSIC 85
                 77888888888887777555533333333.2468*********9983344455556899********99.9**********8765 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.3e-08
    TIGR00633 140 k..ekpvvlcGDlNvah....eeiDlanpkenkkkagfteeerealdelleagfvDtfrklnpekeeaYtwwdyrs.kareknvG...wRiDyilvsealaekvvdslidsevrgSDHaPvvlel 254
                     ++p+vl+GD+N       +++  +  ++n+++ g  +     l++l ++g++D+f +   ++    +  d  + +  +  vG   +R+Dy+++s+al  k + s+++  + +SDH Pv+ ++
  MMETSP1174-20130828|12096_1 164 PslTRPLVLLGDMNALTrndyTDDEWEMIEQNAESKGWAPPSFGCLSALTSNGLQDAFVQSRGGTL-LSSRRDAEAdQITTAHVGhplMRVDYCFASHALGLKSTVSKVEVGMVSSDHFPVTFDF 287
                  23489*********754111134445555678999***********************99888775.3333333332334444555559********************************9876 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00036      0.73      21      72 ..      27      83 ..       2      95 .. 0.71
   2 !   12.4   0.0   9.7e-06      0.02     124     252 ..     152     285 ..     131     287 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00036
    TIGR00195 21 flkeek..pDvlclqEtkvad..eqfpkelvekegYhvffsga.kgysGvailskee 72
                 fl e +  pD+++l E+ ++   e ++       gY v f g   g++G a+ls++ 
  MMETSP1174-20130828|12096_1 27 FLAELQppPDIVALNEVDISTqpECLDSLASMLGGYSVAFFGHvAGRYGNALLSRHS 83
                 555543228*******998651155666666778**99877777**********976 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 9.7e-06
    TIGR00195 124 leelqkyleklekk.dkpvlicGDlniap....eeiDlkspkenrnragfleeerealdklleaglvDtfRklnpdegkyswwdYrtk.ardrnlG...wRiDyflvseklkervkdalidkdvrgsekpsDHaPvvl 252
                  + +l++ l++l  +  +p++++GD+n       ++ + +  ++n ++ g+ +     l+ l ++gl+D+f +    +   s  d  +       +G   +R+Dy ++s+ l  +   + ++  + +    sDH Pv+ 
  MMETSP1174-20130828|12096_1 152 EVQLEHILQSLAPSlTRPLVLLGDMNALTrndyTDDEWEMIEQNAESKGWAPPSFGCLSALTSNGLQDAFVQSRGGTLLSSRRDAEADqITTAHVGhplMRVDYCFASHALGLKSTVSKVEVGMVS----SDHFPVTF 285
                  557788888877552578********7541111344566678888999**********************887766655555555544123344554447*********99876666655555544....6****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1022.07
//
Query:       MMETSP1174-20130828|12098_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.9    4.4  15.4        7.3    3.9  10.6    1.3  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.6    0.0018       7.3      30      80 ..      99     150 ..      92     180 .. 0.48

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0018
    TIGR03593  30 qkppaaaqqaesqsaa.aaaaasaaaaasadapsaaaaaaaaaaakritvkt 80 
                  q++ +++qq+++++++ +a++++++++ s + p+++a++a++++a+++t +t
  MMETSP1174-20130828|12098_1  99 QQQHQQQQQQQQKQQQlQANNSKNHSNNSYNRPATSATTATTTTATTTTTTT 150
                  2222222222222222433333333333333333333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.69
# Mc/sec: 600.65
//
Query:       MMETSP1174-20130828|12102_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|12105_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|12109_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 429.81
//
Query:       MMETSP1174-20130828|12114_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:01.00
# Mc/sec: 914.68
//
Query:       MMETSP1174-20130828|12122_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|12125_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 183.98
//
Query:       MMETSP1174-20130828|12128_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1174-20130828|12133_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|12136_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 160.53
//
Query:       MMETSP1174-20130828|12137_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1005.63
//
Query:       MMETSP1174-20130828|12139_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|12140_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.0   0.1     0.0058   13.8   0.0    1.6  2  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.17   6.9e+02     198     209 ..      31      42 ..      22      49 .. 0.78
   2 !   13.8   0.0   1.4e-06    0.0058     128     164 ..     153     189 ..     138     209 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.17
    TIGR01762 198 denwkpdeasav 209
                   ++w+pde  +v
  MMETSP1174-20130828|12140_1  31 VDQWDPDEGVSV 42 
                  568999998776 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.4e-06
    TIGR01762 128 eefggeitvwtaftdatrenGclkvipGthnslnyde 164
                  e+    +  w a+ dat enGcl    G+h++  y+ 
  MMETSP1174-20130828|12140_1 153 EPKQTCLGLWLALEDATLENGCLWARRGSHREPVYQR 189
                  344567889*********************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 867.93
//
Query:       MMETSP1174-20130828|12145_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   16.1   4.5     0.0004   16.0   3.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00053   15.6   6.7    0.00059   15.4   4.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.028   11.4   4.7      0.054   10.5   3.1    1.6  2  TIGR00219 mreC: rod shape-determining protein MreC
       0.11   10.5   9.6       0.17    9.8   3.5    2.8  3  TIGR00293 TIGR00293: prefoldin, alpha subunit
       0.15    8.8   4.6      0.052   10.3   1.5    1.4  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.1   4.9e-07    0.0004     359     428 ..     178     247 ..      68     258 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.9e-07
    TIGR02168 359 eleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelek 428
                  + +e +   +++++ l++l+e++e+ +++ +ele+++++l+++++r +aele+ e+r+++l++ + +  +
  MMETSP1174-20130828|12145_1 178 NSSETKYVEQAANELLSTLKENIESMKKQSSELESDEKNLDNKIRRKRAELERNEKRLKNLQNVRPTFMD 247
                  2222233344444444444555555555555555555555555555555555555554444444433333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   4.6   7.2e-07   0.00059     371     483 ..     138     253 ..      59     258 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.2e-07
    TIGR02169 371 raeleevdkeaaelreelkelkekleklkeelnelkreldrlleel...krleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelekle 483
                    ++ e  ++   l  + ++ +e+  k+ + l+++ ++ld   e++   + ++e l+ lk+++e+++++  ele++ ++l+++i++++ +le++++ l+++++      +e+e+le
  MMETSP1174-20130828|12145_1 138 ATDITERGARLFDLLGKEHSIREERGKALRFLDQVSGNLDNSSETKyveQAANELLSTLKENIESMKKQSSELESDEKNLDNKIRRKRAELERNEKRLKNLQNVRPTFMDEYERLE 253
                  44444444444444445555555555555555555555555555442213344445666666666666666666666666666666666666666666666666666666666655 PP

>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.67   5.5e+02      76     103 ..      59      86 ..      45      96 .. 0.68
   2 ?   10.5   3.1   6.5e-05     0.054      36     109 ..     171     241 ..     156     253 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.67
    TIGR00219  76 kklrqellkknaqlelltqelkqENkrL 103
                  + +r e+l  +aq  +++ ++k   krL
  MMETSP1174-20130828|12145_1  59 EDDRVEFLTSIAQAMAVKAKVKLNAKRL 86 
                  5566666666666666666566555555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 6.5e-05
    TIGR00219  36 krsddetavtqnyylanaprelldgisenlkdlnkleleNkklrqellkknaqlelltqelkqENkrLrelLns 109
                  ++s++    ++  y+++a +ell+ + en+++++k   e + + ++l++k   +  +  el++  krL++l n 
  MMETSP1174-20130828|12145_1 171 QVSGNLDNSSETKYVEQAANELLSTLKENIESMKKQSSELESDEKNLDNK---IRRKRAELERNEKRLKNLQNV 241
                  5666666778889*************************************...455666899999999998775 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.13   1.1e+02      84     110 ..      52      78 ..      50      89 .. 0.65
   2 ?   -0.1   0.0      0.25     2e+02      74     102 ..     152     180 ..     151     183 .. 0.84
   3 ?    9.8   3.5   0.00021      0.17      79     127 ..     184     232 ..     180     240 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.13
    TIGR00293  84 leeAieilkkkieelekaieklqeelq 110
                  l++ i++ ++++e l++ ++ +  +++
  MMETSP1174-20130828|12145_1  52 LSDVIDTEDDRVEFLTSIAQAMAVKAK 78 
                  566777777777777777776655444 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.25
    TIGR00293  74 iGagyyvekdleeAieilkkkieelekai 102
                  +G   ++ +++ +A+++l++   +l++++
  MMETSP1174-20130828|12145_1 152 LGKEHSIREERGKALRFLDQVSGNLDNSS 180
                  68888999**********99888887765 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00021
    TIGR00293  79 yvekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqqkq 127
                  yve+ ++e +++lk++ie ++k++ +l++  ++l +++ + ++el++  
  MMETSP1174-20130828|12145_1 184 YVEQAANELLSTLKENIESMKKQSSELESDEKNLDNKIRRKRAELERNE 232
                  89************************************99999998765 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.65   5.3e+02      92     202 ..      64      85 ..      50     112 .. 0.44
   2 ?   10.3   1.5   6.4e-05     0.052     115     165 ..     191     241 ..     142     257 .. 0.61

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.65
    TIGR01843  92 aleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLeler 202
                  ++ +++a++ a  ++ +++                                                                                         ++r
  MMETSP1174-20130828|12145_1  64 EFLTSIAQAMAVKAKVKLN-----------------------------------------------------------------------------------------AKR 85 
                  3333333333333333322.........................................................................................222 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 6.4e-05
    TIGR01843 115 illsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaq 165
                  +lls  ++  e++k+q s++es  ++l++++ +  a+++++e++l++lq+ 
  MMETSP1174-20130828|12145_1 191 ELLSTLKENIESMKKQSSELESDEKNLDNKIRRKRAELERNEKRLKNLQNV 241
                  222211244555555566666666666666666666666666555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       415  (0.10117); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 854.63
//
Query:       MMETSP1174-20130828|12143_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1167.06
//
Query:       MMETSP1174-20130828|12141_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   35.3   1.0    4.1e-09   34.4   0.7    1.4  1  TIGR03187 DGQHR: DGQHR domain


Domain annotation for each model (and alignments):
>> TIGR03187  DGQHR: DGQHR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.7     1e-12   4.1e-09      42     160 ..     126     257 ..     125     346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 1e-12
    TIGR03187  42 RplnksRikeiarYie..srdatfpsaiilaidesvefeelegegekv.gtleipeedasalivDGQHRlaaiedaekespeaketipvvifidlgleeqrqiFadiNlkakk...pksllael.........y 160
                  R+ +++R   ia+ ++  ++  ++++ +i   ++++e +   +++  +  + e++++ + + i+DGQHR  a++++ ++     + + ++++  +g+e++r++F diN++ +    +k++ ++l          
  MMETSP1174-20130828|12141_1 126 RHYKQERSHRIAKDLKanKNRRIILPGLITIYEKEWEKQAVPTTAL-LdNLEELQKARKRFGILDGQHRVGALKKLHDDGDY-LKPVEIEVIRLEGEEQVRDLFNDINKAEPVqpvDKASKSKLsekdreilqS 257
                  78899999999999998788899*************9999999763.3244455678********************99887.889***********************9764413455555554333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1123.44
//
Query:       MMETSP1174-20130828|12152_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   67.7   0.0    3.1e-19   67.3   0.0    1.1  1  TIGR01933 hflK: HflK protein
    2.2e-07   27.8   0.2    1.5e-05   21.8   1.2    2.0  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   1.5e-22   3.1e-19       2     213 ..      20     229 ..      19     238 .. 0.95

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 1.5e-22
    TIGR01933   2 yiikeaergvvlrfGkysrvlepGlnlkipfieevykvnvekvrelak.eglmltkDenivevelnvqYkisdpakylfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeerlineaeayanevvPkarGeAqriieeAkgYkeerineAkgdverfe 213
                  +++   ++ +v r G ++r l pG +l  +  e+v +   ++ + +     +  t D+  ++ + +v  +i   ++  ++ve   +++ +   + lre +G+ +lde +++ R+ i+++  + ln+  +s   G++++ v++q+  p   + +A +  +aA  ++  +i  +e +    + +a+G+A+ +i +A++ k+++i+ A+g+ er++
  MMETSP1174-20130828|12152_1  20 KVVTTGDECLVERCGCFNRRLGPGWHLLARPFESVSMHATTREQVVDIpPQQCYTLDNAPIKADAVVYMRIFSMEAARYQVEAVYNAILNLCLTQLREEVGKLTLDESFSS-RERINKALLSDLNKATRS--WGVEITRVEIQNLEPSPVILSAMELQMAAERKKRAAILHSEGERTTLTNEAEGHASAVIADAEARKQAMILAAEGESERLR 229
                  6889999********************************999998775146789*******************************************************99.**************9887..59***************************99999********************************************985 PP

>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0027       5.6       9     138 ..       8     126 ..       2     134 .. 0.75
   2 !   21.8   1.2   7.2e-09   1.5e-05     172     283 ..     129     240 ..     116     243 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0027
    TIGR01932   9 ivlvivvllqslfvikEgergiilrfGkilkddndkalvyeaGLhvkiPliesvkil.dakiqtvDgeadrivtkekkdlivdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelke 138
                   v   ++   ++ v+  g+  ++ r G   +          +G h+ +  +esv +  +++ q vD  +++  t ++  +  d+ +  ri  ++         +++a +  i +    +lR+e+gkl l+e
  MMETSP1174-20130828|12152_1   8 GVACTAYAAACFKVVTTGDECLVERCGCFNRRLG-------PGWHLLARPFESVSMHaTTREQVVDIPPQQCYTLDNAPIKADAVVYMRIFSMEAA-----RYQVEAVYNAILNLCLTQLREEVGKLTLDE 126
                  5555666667777777777777777777766655.......99999988889999873578999***********************999766532.....234556666777777778888888888877 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 7.2e-09
    TIGR01932 172 kgreilkkeilqiaesdlkdlGievvDvrikkiklsdelsesiynRmrsEreaiArkyRsqGeekaeelrakaekEvvkiL..seAereariikgegdaeaAklysdayskdpe 283
                  ++re ++k +l+  +++++  G+e+  v i++++ s+ + +++   m +Er++ A    s Ge+    l  +ae     ++  +eA+++a i+ +eg+ e  +l +d   ++++
  MMETSP1174-20130828|12152_1 129 SSRERINKALLSDLNKATRSWGVEITRVEIQNLEPSPVILSAMELQMAAERKKRAAILHSEGERT--TLTNEAEGHASAVIadAEARKQAMILAAEGESERLRLEADGLAQSID 240
                  67899999999999*******************************************99999765..556666666555551167889************99999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1475.45
//
Query:       MMETSP1174-20130828|12156_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 194.51
//
Query:       MMETSP1174-20130828|12155_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 531.62
//
Query:       MMETSP1174-20130828|12158_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   10.4   0.0      0.063    9.8   0.0    1.3  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   1.5e-05     0.063     204     263 ..      55     117 ..      35     134 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.5e-05
    TIGR03150 204 kalstrnddpekasrPfdkdrdGFvlg..eGagvlvlEelehAka.RgAkiyaevvGyglsaD 263
                  ka ++ + d ++a r fd +r+GF+ +   G g++ l +l + ++ R A    ++ G g   D
  MMETSP1174-20130828|12158_1  55 KAKAKLQHDITTALRKFDVNRNGFITSleVGQGIVGLKNLPNSQKiRSAVQQVDLDGTGEMVD 117
                  6777788999**************9653279********977654399988889999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1203.90
//
Query:       MMETSP1174-20130828|12159_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|12161_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-07   26.4   0.0     0.0093   12.8   0.0    2.0  2  TIGR00048 TIGR00048: 23S rRNA m2A2503 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00048  TIGR00048: 23S rRNA m2A2503 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.3e-06     0.013     260     286 ..       4      30 ..       2      47 .. 0.89
   2 !   12.8   0.0   2.3e-06    0.0093     281     320 ..      47      89 ..      40      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-06
    TIGR00048 260 tfeyvllddvnDqvehaeeLaelLkgv 286
                  ++ey+l+d++nD  + a++La+  ++ 
  MMETSP1174-20130828|12161_1   4 MLEYLLIDGLNDRDQDADDLAQFYRDR 30 
                  89********************98875 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.3e-06
    TIGR00048 281 elLkgvkckvnLipfnpvee...adyersseeridrfakvLks 320
                  ++L+  +  +n+ip+np++    + y+ +s +ri +f++ L++
  MMETSP1174-20130828|12161_1  47 KKLRAGQPMINIIPYNPTSAgalQGYRTPSDARIAAFHERLRQ 89 
                  678889999********9873335799***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 284.98
//
Query:       MMETSP1174-20130828|12153_1  [L=2441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.39u 0.18s 00:00:01.56 Elapsed: 00:00:01.20
# Mc/sec: 2684.88
//
Query:       MMETSP1174-20130828|12160_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 546.81
//
Query:       MMETSP1174-20130828|12162_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1471.13
//
Query:       MMETSP1174-20130828|12175_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 341.62
//
Query:       MMETSP1174-20130828|12176_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 344.11
//
Query:       MMETSP1174-20130828|12181_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|12180_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-12   42.0   0.0    7.7e-12   41.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      2e-05   22.0   0.2    5.3e-05   20.6   0.1    1.7  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   3.8e-15   7.7e-12       3     188 ..     132     313 ..     130     354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 3.8e-15
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa.dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesha..kvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkrv 188
                  g++v++k+  +    + r+      e++   +L+hP iv+L+D  e++  ll   +e   G+ l  v+   +  +p     ++ +  +D l   h + + h D+kP+ni+v +++ es+   k+ DF ++    +++          +   Gs  + aPe   +g     k D+++ G ++ e + G++ 
  MMETSP1174-20130828|12180_1 132 GERVVVKVWEKRMIRRFRQLELIDEEMKTLRKLQHPSIVQLIDAWETPA-LLNVAYER-FGKDLYYVMEPyNSKMPDSLIRQITTPLVDVLQYIHGQNIAHLDIKPENILVLMNGAESKCsvKLTDFELAV-EVDAD-----DYSFFQGPRGSDGFMAPEMFaKGGYNPMKCDVWSLGCVLHELVVGHEN 313
                  689*********99*********************************99.77777776.69****99986256677777788888999***********************99998876422788998853.33333.....344445556778888888762344445577888888888887777754 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.6e-08   5.3e-05      17     136 ..     132     259 ..     124     268 .. 0.79
   2 ?   -2.6   0.0      0.32   6.6e+02     105     119 ..     371     385 ..     341     391 .. 0.67

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.6e-08
    TIGR03724  17 glkavvK...eRvkKsYrhpel.DeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekelellkevGelvgklHkagivhgDlttsNiivk......ddklyliDfGLg 136
                  g+++vvK   +R+ +++r+ el De++++ R  +   +++ +     +tP++++v  e++   + y+ +   +++ ++   ++++ + +++  +H ++i+h D+ ++Ni+v       + ++ l Df L+
  MMETSP1174-20130828|12180_1 132 GERVVVKvweKRMIRRFRQLELiDEEMKTLRKLQHPSIVQLIDAW--ETPALLNVAYERFGKDLYYVMEPYNSKMPDSLIRQITTPLVDVLQYIHGQNIAHLDIKPENILVLmngaesKCSVKLTDFELA 259
                  6666666333699999*997754***********99999998887..7**********999999999888877777777779***************************994233322334556666665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.32
    TIGR03724 105 klHkagivhgDltts 119
                  +l  a+++h D+t+s
  MMETSP1174-20130828|12180_1 371 RLNAAELLHHDPTVS 385
                  577788999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 1314.39
//
Query:       MMETSP1174-20130828|12182_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-42  140.7   0.6    4.3e-42  140.4   0.4    1.1  1  TIGR01046 S10_Arc_S20_Euk: ribosomal protein S10
    4.5e-16   56.8   0.1    5.6e-16   56.5   0.1    1.1  1  TIGR01049 rpsJ_bact: ribosomal protein S10


Domain annotation for each model (and alignments):
>> TIGR01046  S10_Arc_S20_Euk: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.4   2.1e-45   4.3e-42       1      99 []      29     127 ..      29     127 .. 0.99

  Alignments for each domain:
  == domain 1    score: 140.4 bits;  conditional E-value: 2.1e-45
    TIGR01046   1 qkarikltstnvkslekvceqlkkiaektgvklsGPvplPtkrlrvvtrksPdGeGsktwdrwelrihkrlidleadervlrqimkikvpedveieiel 99 
                  +++ri+lts nv++lekvc++lk++a  + +++sGPv+lPtk+lr++trksP+GeG++twdr+e+rihkr++dl++++++++qi+ i++ ++ve+e+++
  MMETSP1174-20130828|12182_1  29 HRIRITLTSLNVENLEKVCADLKRGAVDKKLRVSGPVRLPTKKLRITTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKQITAISIAPGVEVEVTI 127
                  79**********************************************************************************************985 PP

>> TIGR01049  rpsJ_bact: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   2.7e-19   5.6e-16       2      98 ..      30     126 ..      29     127 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 2.7e-19
    TIGR01049   2 kiriklksydkelldqsikkivetvkrtgakvkgpipLPtkkekytvlrsphvn.kksreqfeirthkRlidivevnsktldaLmkldlpagvdveik 98 
                  +iri l+s + e+l+++++ + + +   + +v+gp+ LPtkk ++t  +sp  +  +  ++fe+r hkR++d+ +++ ++++ +++++++ gv+ve++
  MMETSP1174-20130828|12182_1  30 RIRITLTSLNVENLEKVCADLKRGAVDKKLRVSGPVRLPTKKLRITTRKSPCGEgTNTWDRFEMRIHKRILDLHSPS-EIVKQITAISIAPGVEVEVT 126
                  8**************************************************98725788**************9996.799**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 519.96
//
Query:       MMETSP1174-20130828|12184_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 367.97
//
Query:       MMETSP1174-20130828|12183_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.10s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 1159.82
//
Query:       MMETSP1174-20130828|12185_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.57
# Mc/sec: 2091.34
//
Query:       MMETSP1174-20130828|12190_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1174-20130828|12188_1  [L=911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.82
# Mc/sec: 1466.37
//
Query:       MMETSP1174-20130828|12189_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-05   20.5   0.2     0.0024   15.3   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00019   17.3   0.3    0.00025   16.9   0.2    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0019       3.9     136     183 ..     422     470 ..     417     471 .. 0.86
   2 !   15.3   0.0   1.2e-06    0.0024      43      99 ..     468     524 ..     466     526 .. 0.95

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0019
    TIGR02521 136 rsyeNaglcalka.gdtekaekyltralkidpkrpesllelaelklkkg 183
                  r+ye a+  a ++ g+ + ae+ +++++++ + +pesll l ++kl +g
  MMETSP1174-20130828|12189_1 422 RAYEAAARAAINIpGQLKMAETLIRQSIELHQAYPESLLVLGHVKLVQG 470
                  78888888888864788999*********************99998776 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.2e-06
    TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                   qg+ + A e l  A++++p +a+a++ l  ++  lg+ + A  + r A +l+p+++
  MMETSP1174-20130828|12189_1 468 VQGKPQLAIEPLLSAINVNPGYAEAHHKLSQALTMLGNSTGASYHQRMAAKLEPKSY 524
                  6999*************************************************9975 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.2e-07   0.00025     581     666 ..     436     521 ..     404     528 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-07
    TIGR02917 581 gelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkp 666
                  g+lk a ++ ++  +l+++ pe l++lg   l +++ + a+e + ++++++p  a+a+ +l ++  +  n+ +A    + a +l+p
  MMETSP1174-20130828|12189_1 436 GQLKMAETLIRQSIELHQAYPESLLVLGHVKLVQGKPQLAIEPLLSAINVNPGYAEAHHKLSQALTMLGNSTGASYHQRMAAKLEP 521
                  44555555555555555555555555555555555555555555555555555555555555555555554444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.88
# Mc/sec: 794.93
//
Query:       MMETSP1174-20130828|12196_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.70
# Mc/sec: 431.79
//
Query:       MMETSP1174-20130828|12198_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|12199_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 315.31
//
Query:       MMETSP1174-20130828|12197_1  [L=995]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    8.3   0.0       0.21    7.8   0.0    1.1  1  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily


Domain annotation for each model (and alignments):
>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   5.1e-05      0.21     410     450 ..      31      71 ..      16      90 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 5.1e-05
    TIGR03648 410 varvallvviviaaylalnkpgfiaqvvalAFglaaaslFp 450
                  + r++++++ +ia+y ++n+p+f+ +vv+   +++a+s F 
  MMETSP1174-20130828|12197_1  31 YKRILIVAACAIAGYTSYNPPAFLDNVVSSLHDFSASSPFL 71 
                  679**********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 1824.02
//
Query:       MMETSP1174-20130828|12193_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-130  433.5   0.0   1.8e-128  427.4   0.0    2.0  1  TIGR00398 metG: methionine--tRNA ligase
    1.7e-32  110.1   0.0    5.3e-22   75.4   0.0    2.1  2  TIGR00422 valS: valine--tRNA ligase
    4.7e-29   99.0   0.0    5.8e-20   68.9   0.0    2.4  2  TIGR00392 ileS: isoleucine--tRNA ligase
    3.3e-22   76.2   0.0    1.8e-10   37.4   0.1    2.4  2  TIGR00396 leuS_bact: leucine--tRNA ligase
    1.2e-21   74.9   0.2    2.6e-21   73.8   0.0    1.6  2  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    8.5e-18   61.6   0.0    6.6e-10   35.4   0.0    2.1  2  TIGR00395 leuS_arch: leucine--tRNA ligase
    1.5e-12   45.2   0.0    4.7e-07   27.0   0.0    2.1  2  TIGR00435 cysS: cysteine--tRNA ligase
      1e-07   29.8   0.0    1.8e-07   29.0   0.0    1.4  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    0.00056   16.7   0.0       0.16    8.5   0.0    2.2  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
     0.0053   12.8   0.0     0.0092   12.0   0.0    1.3  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.4   0.0  4.3e-131  1.8e-128       1     529 [.      91     596 ..      91     597 .. 0.91

  Alignments for each domain:
  == domain 1    score: 427.4 bits;  conditional E-value: 4.3e-131
    TIGR00398   1 ilvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdryvegecpkckeedargdqcekcgrllePlelieprcvvskakpelkeeehyFfrlskfekkleelikknpeskklasev...knvl.enflkegLkdlaitRdlvewGipvPkdpnkvvYVWldAligYisalseeknatekfkkywkekedaelihliGkdivrfHtiywPamllalelklpkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakee.ekekellavllelirvlsillkpilpklsekilkllnleleadkl.....lkklekkklekaeklfkkl 529
                  +++Tta+ Y+ng pH+Gh+++ ++ D++ar++r+ G  v+f+tgtDehG+ki+ +Ae+ gl+P ++++k+a+ef+k+ k l +s+d F rTt+ +hk+++q +++k+ e G+iy +++ g+Y  ++e+f++ +  e+  +k  ++                + l+e             +e +yFfrlsk++++l +l++ +pe+ +++s++   k +l  ++ ++ L+dl+i+R++++wGipvP+d n+v+YVW+dAl +Y+s ++ +   t  ++  w+++     +h+iGkdi+rfH++ywPa+l++++l+lp  + +hg+++ e g+kmSkS +nvvdp+++l +y+ad++R+yl   +p++ D++fs+e +v+ +   l+++lgNl++R  ++++ky+ +k++     ++ +ek l+ + +    ++ea++k++++ a e  ++ ++++n+++  ++Pw++++++ ++  e++ + le+++v++ +l+p++p + ++il++l+   + ++      ++ +e++ +    +lf+kl
  MMETSP1174-20130828|12193_1  91 FYITTAISYTNGNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKDGLQPIDICNKYAAEFQKMNKKLAVSNDFFVRTTSAKHKALAQALWKKCEEAGDIYLDNYTGWYLEREETFVTPKDAEEWGYKDPSS---------------GVPLKE------------VSEASYFFRLSKYRQPLLDLLNDRPEFCQPESRRlliKAMLePTEGDNVLRDLSISRTTFKWGIPVPGDVNHVMYVWFDALSNYLSGVDGMDP-TSPLADLWPAD-----VHMIGKDIIRFHCVYWPAILMSAGLPLPGTVYSHGFVSAEdGRKMSKSFNNVVDPNEMLMKYSADAFRFYLCTDAPFGGDVKFSEESLVRANDGPLADTLGNLVHRATNLTNKYCAAKVPGNSSGAADIEKPLD-VGRLRASMEEAMKKLDLSGAREIAMEGARNANNWLHAMEPWKMKDDKaTERVEVVRLTLEAVYVIALFLSPFIPAACSEILRRLGSPPRPIHSmsteyANLTEGTDVTIGAPLFAKL 596
                  69*********************************************************************************************************************************99777777766655...............234555............46899*************************9997221233333344567*************************************6665555.799********.....***************************************999******************************************************************************99997776666665.66778899***************************************889999999*****************************98877666555666777777777777777775 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.3e-11   5.2e-09      34      92 ..      90     148 ..      81     170 .. 0.88
   2 !   75.4   0.0   1.3e-24   5.3e-22     450     699 ..     314     563 ..     309     584 .. 0.68

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.3e-11
    TIGR00422  34 sfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEk 92 
                  +f i++   +  G  HiGHa+e  ++Di++R++r+ g  v fl+G+D +g    +  Ek
  MMETSP1174-20130828|12193_1  90 KFYITTAISYTNGNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEK 148
                  577888888999**************************************877777776 PP

  == domain 2    score: 75.4 bits;  conditional E-value: 1.3e-24
    TIGR00422 450 VLDTWfsSslwplstlgWpeekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaark..FlnKlwnasrfvlmnledk..keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeee.eeekkeakstlaivLdkllrllhpfiPflteeiyqkl 699
                  V+  Wf+     ls ++  + ++ l++ +p+++ + g DIi+f  ++     ++    +P  +v+ hg+v  e+grKmSKS +Nv+dP +++ ky aDa Rf+l++ +  G D++++++ +  a+    +  l n  + +   +++    ++  +++ + ++++     + +l ++++ea++k +++ a ++ +e      +++++ ++ +  ++++ ++e+ e+ +     +  +  +l+pfiP    ei ++l
  MMETSP1174-20130828|12193_1 314 VMYVWFDALSNYLSGVDGMDPTSPLADLWPADVHMIGKDIIRFHCVYWPAILMSAGLPLP-GTVYSHGFVSAEDGRKMSKSFNNVVDPNEMLMKYSADAFRFYLCTDAPFGGDVKFSEESLVRANDgpLADTLGNLVHRATNLTNKYcaAKVPGNSSGAADIEKP--LDVGRLRASMEEAMKKLDLSGAREIAMEG--ARNANNWLHAMEPWKMKDDkATERVEVVRLTLEAVYVIALFLSPFIPAACSEILRRL 563
                  7778**9999999****99999**********************9996544444444555.69*******************************************************99765543225555555554444444444223333334444444443..34455555666666666666666666665..455566666555544444412222222222223334445556666666666666555 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   5.5e-10   2.3e-07      45     124 ..      98     175 ..      85     193 .. 0.86
   2 !   68.9   0.0   1.4e-22   5.8e-20     533     799 ..     312     571 ..     309     583 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 5.5e-10
    TIGR00392  45 PyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalka 124
                   y+nG++h+gha  + + Dii r++++ G +v +  G D HG  i    ek+ g +  + ++++   ef+++ ++ a+++
  MMETSP1174-20130828|12193_1  98 SYTNGNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKD-GLQPIDICNKYA-AEFQKMNKKLAVSN 175
                  59*******************************************9988876.566588888887.88999888888765 PP

  == domain 2    score: 68.9 bits;  conditional E-value: 1.4e-22
    TIGR00392 533 edvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapyk.kvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaek.llkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvh 799
                  ++v+ vWfd  s + + ++    +   ++ +pad+ + G D  r  F      ++ +s   p   +v +hGfv +e+GrKMSKs+ Nvvdp++++ ky aD++R+y+++   +  d+kfsee l ++++  l  +l n+++     +nL +    +++++ ++    D      +  l +++eea++k +++ + +  ++   +  +nw l+++     +++k +++ ++     e++  ++ +l+p++p  + ei ++l      + +h
  MMETSP1174-20130828|12193_1 312 NHVMYVWFDALSNYLSGVDGMDPTSPLADLWPADVHMIGKDIIR--FHCVYWPAILMSAGLPLPgTVYSHGFVSAEDGRKMSKSFNNVVDPNEMLMKYSADAFRFYLCTDaPFGGDVKFSEESLVRANDGpLADTLGNLVHR---ATNLTNKY-CAAKVPGNSSGAADIEKPLDVGRLRASMEEAMKKLDLSGAREIAMEGARN-ANNW-LHAMEPWKMKDDKATERVEVVRLTLEAVYVIALFLSPFIPAACSEILRRLGS--PPRPIH 571
                  79************9999999999999*****************..9**********999998637889****************************************98899********99999884144445444444...45888666.67777777777888777778999999999999999999887777766666.6666.5555555555555555558888888999999999**********99999877..445555 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   4.4e-13   1.8e-10      29     205 ..      89     263 ..      80     273 .. 0.89
   2 !   36.0   0.0   1.1e-12   4.7e-10     604     768 ..     388     573 ..     378     597 .. 0.63

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 4.4e-13
    TIGR00396  29 kkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdG.rseRgdasvekkelkqwvlkitkyaekLledLe 205
                   k+Yi + + Y  g+ H+GH     +tD+++R++r+ g  v    G D  G    n a + g +P +  ++  a+++k  ++l +s d+   ++tt  ++    q ++ +  e+g +y ++ + ++ ++++t +   +  +  G +   ++++ +  +   +++++ ky + Ll+ L+
  MMETSP1174-20130828|12193_1  89 GKFYITTAISYTNGNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKDGLQPIDICNKYAAEFQKMNKKLAVSNDF--FVRTTSAKHKALAQALWKKCEEAGDIYLDNYTGWYLEREETFVTPKDA-EEWGyKDPSSGVPLKEVSEASYFFRLSKYRQPLLDLLN 263
                  59*********************************************************************************999887..689**************************************9988887.45564555666666666677788888888888887776 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1.1e-12
    TIGR00396 604 ekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeR..fldrvynlvkeilsekea.........ktelkeealee..aekelrrevhkalkkvted......lekkeslntviselmkllnallkakk...e.elllealkalvtvlspiaPhlaeelaeklgeeeseikqa 768
                   kmsks +n++dP+e++ ky aDa R y+   +P   +++++e+ l  a+     d + nlv+  ++ +++                ++e+     +lr ++++a+kk   +      +e +++ n  + ++     +  ka++     +l+lea+  +   lsp++P  + e+ ++lg+ +  i+++
  MMETSP1174-20130828|12193_1 388 RKMSKSFNNVVDPNEMLMKYSADAFRFYLCTDAPFGGDVKFSEESLVRANDgpLADTLGNLVHRATNLTNKycaakvpgnS--SGAADIEKplDVGRLRASMEEAMKKLDLSgareiaMEGARNANNWLHAMEPWKMKDDKATErveVvRLTLEAVYVIALFLSPFIPAACSEILRRLGSPPRPIHSM 573
                  7******************************************99976653223344444444433322222222222221..22222222002223444555555554322000111344444555555554444444444446642478889999999999************9999887777765 PP

>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2         7   2.9e+03      15      28 ..      50      63 ..      42      76 .. 0.42
   2 !   73.8   0.0   6.3e-24   2.6e-21      14     137 ..     607     734 ..     598     736 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 7
    TIGR00399 15 kkkekkkeeekaee 28
                 k+k+kk++++ka+ 
  MMETSP1174-20130828|12193_1 50 KAKQKKRNDAKAKA 63
                 22333332222222 PP

  == domain 2    score: 73.8 bits;  conditional E-value: 6.3e-24
    TIGR00399  14 akkkekkkeeek....aeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgkdlallspdkevkaGer 137
                  a+kke +++++k    +++  + e t+ d++ +d+rv+++ ++ + ++s kL   k+  G+e  r+v s ++++++ ee+ gkk+ v++NLk aK+ G +S+Gm+l a+ dg  ++ + p +++k+G r
  MMETSP1174-20130828|12193_1 607 ANKKETQQKGSKgpkpQKNASAAEATVCDLAMLDIRVGEISDVWNHPDSAKLYCEKISCGDESpREVASALRSSFSLEEMKGKKLFVICNLKAAKMGGFTSNGMVLCAKLDG-RVSFVAPPENAKVGAR 734
                  3344444444330001444456688999***********************************************************************************9.8888888889999998 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.7e-09   1.9e-06      25      84 ..      89     148 ..      68     211 .. 0.90
   2 !   35.4   0.0   1.6e-12   6.6e-10     572     778 ..     342     565 ..     338     578 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.7e-09
    TIGR00395  25 ekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaek 84 
                   kf++t a  y nG+ h+Gh++   +++++ar++r+ g++v+f  g    G  i   aek
  MMETSP1174-20130828|12193_1  89 GKFYITTAISYTNGNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEK 148
                  49*****************************************99999999988888876 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 1.6e-12
    TIGR00395 572 yPldlrisakdLipnhLtfyifthvaifPeefW..PrgivvnGyvlle.gkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaak.krl.erlkefaeeiakksd....levg.eelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkd........vlaevle...aiikLlaPfaPhlaeelyeevGk 778
                  +P d+++ +kd+i  h +++     ai+       P ++  +G+v+ e g+k+sks  n++  +e + k+ ad+ r+yl + a    d+ f e+ +  a+   l   l +++++ ++ ++    ++v  +     d+    ++ ++   ++ea+++l+l  a ++a+   +++ ++       ++kd        v+   le   +i+++l Pf+P  + e+ +++G 
  MMETSP1174-20130828|12193_1 342 WPADVHMIGKDIIRFHCVYW----PAILMSAGLplPGTVYSHGFVSAEdGRKMSKSFNNVVDPNEMLMKYSADAFRFYLCTDAPFGGDVKFSEESLVRANdGPLaDTLGNLVHRATNLTNkycaAKVPgNSSGAADIEKPLDVGRLRASMEEAMKKLDLSGAREIAMEGARNANNWLHAMEPWKMKDdkaterveVVRLTLEavyVIALFLSPFIPAACSEILRRLGS 565
                  799**********9998876....455555554116677788888875489****************************************98776544313331456666666666665555633322444444444444444444455556666666666666666677777776665555555556666677555555511167899**************9985 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06    0.0011      35     107 ..     104     176 ..      89     209 .. 0.88
   2 !   27.0   0.0   1.2e-09   4.7e-07     253     372 ..     377     508 ..     343     541 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.7e-06
    TIGR00435  35 sHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieayledleaLnvlkp 107
                   H+Gha + +v D+++r  ++ g  v +     +   Ki ++A++++l+   +++++ +++ +  ++L v + 
  MMETSP1174-20130828|12193_1 104 PHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKDGLQPIDICNKYAAEFQKMNKKLAVSND 176
                  6*****************************999999********************************99765 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.2e-09
    TIGR00435 253 flHngflki.egeKmSKSlgNfitikdllkkfdpralRllll.svhyrnqldfseelleeak.....nalerlakalralkedlasakeiskkksp........lekefeaefvEaldddlntaealavlselvk 372
                  + H gf+   +g KmSKS +N++  +++l k+++ a+R++l   + +   ++fsee l +a+      +l +l++  ++l++++  ak  +++ s+        ++  ++a+++Ea+++ l+++ a ++ +e ++
  MMETSP1174-20130828|12193_1 377 YSH-GFVSAeDGRKMSKSFNNVVDPNEMLMKYSADAFRFYLCtDAPFGGDVKFSEESLVRANdgplaDTLGNLVHRATNLTNKYCAAKVPGNS-SGaadiekplDVGRLRASMEEAMKK-LDLSGAREIAMEGAR 508
                  555.455441789*************************87651678***************99998866677777776666666554433322.2223444455888899999999874.555555554455555 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.4e-10   1.8e-07       3     106 ..     635     735 ..     633     736 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 4.4e-10
    TIGR02222   3 dfekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvlGvideegevvllqpdrevklGtkv 106
                  d++ +d+rvG+i ++ ++p++ k  y  k+  G+e   ++ ++ + + +  ee+ g+++ +++n+ + +++g++s+ +vl ++  +g+v +++p ++ k+G+++
  MMETSP1174-20130828|12193_1 635 DLAMLDIRVGEISDVWNHPDSAK-LYCEKISCGDE-SPREVASALRSSFSLEEMKGKKLFVICNLKAAKMGGFTSNGMVLCAKL-DGRVSFVAPPENAKVGARL 735
                  67889**************9988.5899*****66.556666667888********************************8765.688*************987 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0004      0.16      39     119 ..      91     173 ..      73     205 .. 0.85
   2 !    5.8   0.0    0.0027       1.1     275     335 ..     376     436 ..     346     451 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0004
    TIGR03447  39 lyvcGitPyd..athlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfredmealrv 119
                  +y+     y     h+Gha   l  d++ r  +  g++v +     +  + + + ae+dG    +++++  + f++  ++l+v
  MMETSP1174-20130828|12193_1  91 FYITTAISYTngNPHIGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKDGLQPIDICNKYAAEFQKMNKKLAV 173
                  56666556641146****************************999999999**********9999999999999987777766 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0027
    TIGR03447 275 hyvhagmigldGekmskskGnlvlvsklraaGeePaairlavla.ghyredrewtdevlaea 335
                   y+h  + + dG+kmsks  n+v  +++  + +   a r+ + +   +  d ++++e+l +a
  MMETSP1174-20130828|12193_1 376 VYSHGFVSAEDGRKMSKSFNNVVDPNEMLMK-YSADAFRFYLCTdAPFGGDVKFSEESLVRA 436
                  6899888999***********9866554433.233344444433134566666666666655 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   2.2e-05    0.0092      46     122 ..     641     714 ..     628     717 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
    TIGR00472  46 vvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGM.lCS 122
                  + vG++ +v +hP++ kL+  k++ g++ ++++ ++ +   + +     ++g kL+    +k++k+ G  S+GM lC+
  MMETSP1174-20130828|12193_1 641 IRVGEISDVWNHPDSAKLYCEKISCGDESPREVASALRSSFSLEE----MKGKKLFVICNLKAAKMGGFTSNGMvLCA 714
                  89********************************99998888776....79*****99****************3454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.77u 0.16s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 1645.74
//
Query:       MMETSP1174-20130828|12201_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.019   12.3   0.0    1.1  1  TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE


Domain annotation for each model (and alignments):
>> TIGR03365  Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.7e-06     0.019      66     132 ..      32      98 ..      11      99 .] 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.7e-06
    TIGR03365  66 kelsgeef.ltvslsGGnPallkelgeliellkekgirvaletqGsvakdWlaeldelvlsPkPPssk 132
                  +++++ +f + vs+    P +  + +++i ++++k++r+  + +     +W+++l  l+l  +P s k
  MMETSP1174-20130828|12201_1  32 HAITTYRFhRLVSIEAFFPNVEDSPNQFIIKGHSKNLRLEADSKA-EKDEWVKDLAALTLKSRPKSNK 98 
                  555555541579999999****99*************98887764.5679*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1174-20130828|12203_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1181.13
//
Query:       MMETSP1174-20130828|12202_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1174-20130828|12210_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 690.40
//
Query:       MMETSP1174-20130828|12207_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-24   84.6   0.1    2.1e-24   84.1   0.0    1.1  1  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0     5e-28   2.1e-24       3     295 ..      38     338 ..      36     357 .. 0.78

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 5e-28
    TIGR02110   3 itLangLrvaLvHdpaakraAAllRVaAGShdepsawPGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpaealaaGleRLcemLarPlltvedqqrEreVleAEyialsadadarreaalldalsaahplrrFraGsrdslalenaalQqALrdFhrryYqAeqmqLwLqGPQsLeeLeeLAarfgaslaageelaqaa...paaLlkfaaltlaesseerlvllfalealeaaaeda..vtllkeflq.........deaPggLlAeLrergLaesla.atllyqdar 295
                   tL+ gLrva     + + a   + + AGS  e     G AH+LEHL F Gt+r   + +L   + + G  +NA T   +t +F ++ ++ +  G+  L ++L +P lt  + +rEr V+  E   ++++ +  +   l +a+ ++  l     G     a  n+  Q+ Lrd+  ++Y+A +m++  +G    eeL +L + f ++l+  +++  ++   pa+ +  +++t+    e   +  +a e+   + e+a  + l++ +l+         ++ P  L  +L +r+L++s+  +++ y+d +
  MMETSP1174-20130828|12207_1  38 TTLPSGLRVAS-EVMHGETATVGVWIDAGSRYETANNNGAAHFLEHLTFKGTDRR-SQTQLEVEIENMGAHLNAYTSREQTVYFAKVFKKDVRRGMDILSDILLNPQLTHFAVHRERSVILREMEEVNKQHEEVIMDHLHEAAYSTSGLGMTILGPV---ANINSLQQKDLRDYIDTHYTAPRMVIAGAGAIDHEELVALSQEFWGNLPQASKTTYPTnfdPASFVGSDKRTFGSADE--AHVSLAFEGTAWTSEEAfpLMLIQSMLGawdrlsgagSKVPSVLAQALAQRELCHSFTtLNICYKDTG 338
                  69999999973.23445566777899****************************5.56789999********************************************************9999877665555555556666666666666666654...4444455789**************************************977665544312266777777666655555..66666667667676666225566666642212222225678778888*********963789999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1305.85
//
Query:       MMETSP1174-20130828|12214_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   14.1   1.1      0.011   13.4   0.8    1.5  1  TIGR00849 gutA: PTS system, glucitol/sorbitol-specific IIA component


Domain annotation for each model (and alignments):
>> TIGR00849  gutA: PTS system, glucitol/sorbitol-specific IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.8   2.7e-06     0.011      60      87 ..      14      41 ..       1      56 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-06
    TIGR00849 60 igeqayevtavGevaeenlrelGhitvr 87
                 + e +y +t vGev  +n +el ++   
  MMETSP1174-20130828|12214_1 14 VVELRYVITVVGEVNAKNAVELRYVNTV 41
                 56889*****************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.22s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 214.95
//
Query:       MMETSP1174-20130828|12215_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 723.94
//
Query:       MMETSP1174-20130828|12217_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 479.96
//
Query:       MMETSP1174-20130828|12218_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 763.65
//
Query:       MMETSP1174-20130828|12221_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.20s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 177.68
//
Query:       MMETSP1174-20130828|12216_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-55  185.9   0.0    2.6e-55  185.6   0.0    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    5.2e-23   79.5   0.0      8e-23   78.9   0.0    1.2  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    9.9e-22   75.1   0.0    5.4e-21   72.7   0.0    2.0  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    9.4e-17   58.8   0.0    1.3e-16   58.3   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    2.8e-15   53.9   0.0    1.8e-14   51.2   0.0    1.9  2  TIGR01141 hisC: histidinol-phosphate transaminase
    1.4e-12   45.2   0.0    3.8e-12   43.8   0.0    1.7  2  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
      2e-12   44.5   0.0    2.8e-12   44.0   0.0    1.1  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    3.9e-08   30.6   0.0    7.5e-08   29.6   0.0    1.4  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      4e-07   27.1   0.0    5.8e-07   26.6   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    6.6e-07   26.4   0.0    1.2e-06   25.5   0.0    1.4  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    0.00014   18.2   0.0     0.0002   17.7   0.0    1.2  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.0   7.1e-58   2.6e-55       1     345 [.     159     525 ..     159     537 .. 0.87

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 7.1e-58
    TIGR03947   1 ledWlreryftaevdisssGvkdyslaelrtlaeieledl.dklvlrdseslGgeklraaladrlagGdaekv.lvthGsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaa.erdfrpdlddlralvtdrt.rlvvvnfPhnPtGasvderelsellelaaesga.......vllWdaafadlvydaep.lpepsaaadrvisfgtlskafGlpGlrvGW.cvaPkdllaelvrlrdyltlslsPlvellaevavehadalieprlaearanrrrlldWaaahedvvrltvPeGGvaafprf..agladvtdlCerllarhgvlvvPGscf...Gaadr....vrlGfggss 345
                  le ++ ++ f+a + +  s  +++  +el ++a+ e + l d+l l  +es G + lr+ +++ ++ G  +   ++ +   e iy++  a+l+PGd+v+v  p y+sl+e+a+a+g++vrrw  +a +   +  ++dl+ l +++t +l+v+nfPhnPtGa++++++ + ++ +  e +a       ++  d+ ++ l ++    l  +   +dr++s   +sk    pGlr+GW + + k l+ +lv l+dy+t+  s   e+la  a+++ +++ +  l+  ++n   l  + a++ed++ +  P+ G + fp +    +   t++C++l+ar gvl++P s++   G++++    +r+Gfg s+
  MMETSP1174-20130828|12216_1 159 LERYFARHEFHAPHLLCCSDCEPLLQSELLSMADNECRGLwDNLSLGYTESPGLPLLRDEISQSYETGRIKSSdVIVVTPEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGCTVRRWEPRAsDASLEFCVEDLERLCAEKTpKLIVLNFPHNPTGATLSTEDFARVISICMEDDAgvqqpqpWIFSDEMYRGLEHQGTIrLEAACECYDRAVSLAGVSKVLSCPGLRIGWlATVNKKLMERLVVLKDYTTICSSAPSEILALIALRQREEIGNRNLTLIQSNMGALAAFMAENEDIITWRSPRAGSTCFPSLspLVKRSATAFCDDLVARSGVLLLPASVYselGDTSSpdrrIRIGFGRST 525
                  677788888888999999999999999**********998799*************************87653144566899****************************************766515678999*******998865999********************998765443322333339999*********977538888899***********************5568899***************************************************************************65567889*******************98444443323336*****9764 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   2.2e-25     8e-23      68     371 ..     205     504 ..     180     509 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 2.2e-25
    TIGR01265  68 gYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielviealanaganiLvPrPgfplYetlakalglevrkydl.lpekdweidldelealaDektvalvvin.PsnPcGsvfsrdHlekvvevaeklkl.......liiaDEvYdklvfgdatfvplaklaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvk.PegamyllvklelelleeikdDvdFceklvkEesvillPgsal 371
                  gY+ s G++  r+++ + ++    +++++ dv++ +   ++i +  +a+ ++g+ ++vP P +     +a+a+g  vr ++   ++ + e  +++le l  ekt  l+v n P nP+G+  s +  + v+ ++ +           i++DE+Y  l ++++  +  a  +     +sl+g+sk +  PG r+GWl++v++k + +      lk++++     ++   + l  i  +  +e  ++ + ++++n   +   ++e++ + + + P++ +  +  l+    +  ++ + Fc  lv+   v llP+s++
  MMETSP1174-20130828|12216_1 205 GYTESPGLPLLRDEISQSYE---TGRIKSSDVIVVT-PEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGCTVRRWEPrASDASLEFCVEDLERLCAEKTPKLIVLNfPHNPTGATLSTEDFARVISICMEDDAgvqqpqpWIFSDEMYRGLEHQGTIRLE-AACECYDRAVSLAGVSKVLSCPGLRIGWLATVNKKLMERL---VVLKDYTTI---CSSAPSEILALIALRQREEIGNRNLTLIQSNMGALAAFMAENEDIITWRsPRAGSTCFPSLSPLV-K--RSATAFCDDLVARSGVLLLPASVY 504
                  89***************999...899*****99876.689*****************************************9567999****************77776666********************976432112222269*********999976554.3445556679*********************997644443...344444433...233334556778889999**********************9999888888*99999999987644.4..58899****************987 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   1.5e-23   5.4e-21      68     264 ..     205     404 ..     190     509 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 1.5e-23
    TIGR01264  68 GyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakaldievklynl.ladedweidlkelesliddkt.kalivnnPsnPcGsvfsrkhleellalaerlkl....p...iladeiyedlvfkgatflalaslssevPilslgGlakrllvPGWrlGWliihdrkgvlr 264
                  Gy+ + G +  r++i + y+     g ++  dv++++   +++ ++  a+ ++G+ v+vP P +     +a a++ +v+ ++   +d ++e  +++le l  +kt k++++n P nP+G+ +s +    +++++ +       p   i++de+y +l ++g+  l  a  +     +sl G++k l  PG r+GWl  +++k + r
  MMETSP1174-20130828|12216_1 205 GYTESPGLPLLRDEISQSYE----TGRIKSSDVIVVT-PEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGCTVRRWEPrASDASLEFCVEDLERLCAEKTpKLIVLNFPHNPTGATLSTEDFARVISICMEDDAgvqqPqpwIFSDEMYRGLEHQGTIRLE-AACECYDRAVSLAGVSKVLSCPGLRIGWLATVNKKLMER 404
                  9******************9....899*****99986.689*****************************************9567899***************956677788********************9765321122123499*********99976555.5567777899*********************99986554 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   3.6e-19   1.3e-16      97     359 ..     235     509 ..     195     521 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 3.6e-19
    TIGR03540  97 liGskeGiahlplafvnpGdivlvpdPgyPvykistllaggepye.lPlkeendflPdldaipedvlkka.kilflnyPnnPtsavadkeffkevvefakeyniivvhdaa..yseivfdeykalsflevdgakdv...aielhslsktynmtGWrigf.avGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdllvealkk..iGldvkkpkatfylWvk.vPe.GytsaefakklleeagvvvtpGvgfGesGe 359
                  ++   eGi   + a+++pGd v+vp P+y   +  ++ +g ++    P  ++ +    +++++   ++k+ k++ ln+P nPt+a+ ++e f +v++++ e +  v + ++  +s+ ++ + +    ++++ a +    a+ l  +sk  +  G rig+ a+ nk+l++ l  +k+ +      +    a+ al++ ee+ +++  + +    +l + + +    ++ ++p+a    + +  P    +++ f++ l+  +gv++ p   + e G+
  MMETSP1174-20130828|12216_1 235 VVTPEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGCTVRRwEPRASDASLEFCVEDLERLCAEKTpKLIVLNFPHNPTGATLSTEDFARVISICMEDDAGVQQPQPwiFSDEMYRGLEHQGTIRLEAACECydrAVSLAGVSKVLSCPGLRIGWlATVNKKLMERLVVLKDYTTICSSAPSEILALIALRQREEIGNRNLTLIQSNMGALAAFMAEneDIITWRSPRAGSTCFPSlSPLvKRSATAFCDDLVARSGVLLLPASVYSELGD 509
                  56789************************98877776666666551588888888788899999988886599******************************9999988733578888888888888888886543339******************75899************99888888888889****************9999998877665543112244555554333332202330345678999999999999999999988876 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.19        71     278     318 ..      87     126 ..      79     135 .. 0.78
   2 !   51.2   0.0   4.7e-17   1.8e-14      81     287 ..     238     463 ..     208     493 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.19
    TIGR01141 278 kkleglevyeSkaNFvlikvkedaeelleallekgiivRdl 318
                  +k++ + v   ++ +vl+++  +a++++e+l  +g  v   
  MMETSP1174-20130828|12216_1  87 AKISVFAVSTYDTDYVLVQAA-QADNAAESLRAAGHTVNPA 126
                  4555566667799******98.9999999999998877665 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 4.7e-17
    TIGR01141  81 sdelielliraflepgdavlvleptysmYevsakiagaevkevplked...gqedleavle.aakekvklvflasPnnPtGnllkreeiekvleev.e.da.......lVVvDeAYieFsee..asvlellaeypnlvvlrTlSKafgLAglRvGy.aianaeiiealekvrapynv..sslaleaavaalrdsd.kiektveevkkererlleelkkleglevye 287
                   +e+i + +ra+lepgd v+v+ p y+  + +a++ g  v+  + +++    +  +e+++   a++ +kl+ l  P+nPtG+ l++e++ +v+    e da        +  De Y    ++         + y+  v l  +SK+ +  glR+G  a +n++++e l  +++   +  s ++  +a+ alr+++   ++++  +++++  l +++++ e++ + +
  MMETSP1174-20130828|12216_1 238 PEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGCTVRRWEPRASdasLEFCVEDLERlCAEKTPKLIVLNFPHNPTGATLSTEDFARVISICmEdDAgvqqpqpWIFSDEMYRGLEHQgtIRLEAACECYDRAVSLAGVSKVLSCPGLRIGWlATVNKKLMERLVVLKDYTTIcsSAPSEILALIALRQREeIGNRNLTLIQSNMGALAAFMAENEDIITWR 463
                  5899*************************************998777755533334555555688999************************98876544411111224578999975555432666677889**********************72578999999998777655544478999**********94446677888899999999999988776655 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   4.6e+02     268     298 ..      92     122 ..      83     139 .. 0.57
   2 !   43.8   0.0     1e-14   3.8e-12      74     266 ..     238     457 ..     209     520 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.2
    TIGR01140 268 levvggtalFllvrtedaaalkeaLarrgil 298
                  + v   ++ ++lv+ ++a + +e L ++g  
  MMETSP1174-20130828|12216_1  92 FAVSTYDTDYVLVQAAQADNAAESLRAAGHT 122
                  4555555566666666666655555555433 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 1e-14
    TIGR01140  74 aqeaiqllprl.lapkrv.lvlaptyseyaralraagaevvels.............dleelaael..eeadllvvvnPnNPtGrllekeellalaerl.......karggllvvDEAFidftpaeslaalaea..lpglvVlrSltKffglaGlRlGfvvAe.pallerlkealgpWsv..ngpAqavgeaaladeawq.katrarlaaererlaallaalg 266
                   +e i+  +r+ l+p++   v++p+y+  a+ ++a g++v++++             dle+l   +  ++ +l+v+  P+NPtG +l++e+ +++++ +       ++ + ++  DE +  ++++ ++  +a+   +++ v l  + K+ +++GlR+G+++   ++l+erl  +++  ++  ++p++ ++  al++++ + +++ + ++++  +laa +a+ +
  MMETSP1174-20130828|12216_1 238 PEEGIYITARAiLEPGDDvIVPWPCYQSLAEVATAIGCTVRRWEprasdaslefcveDLERL---CaeKTPKLIVLNFPHNPTGATLSTEDFARVISICmeddagvQQPQPWIFSDEMYRGLEHQGTIRLEAACecYDRAVSLAGVSKVLSCPGLRIGWLATVnKKLMERLVVLKDYTTIcsSAPSEILALIALRQREEIgNRNLTLIQSNMGALAAFMAENE 457
                  467777766553666554499*****************************999955555555...344899999********************99876222222255678************9985554444457**********************98765278899998888877773345666777777776554403444555666666666555555 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   7.5e-15   2.8e-12      82     377 ..     223     521 ..     197     534 .. 0.74

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 7.5e-15
    TIGR03538  82 felpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyq.iyeGaallagaepyflnctaengfkpdfdavpeevWkrv.qllfvcsPgnPtGavlsleelkklleladkydfiiasde..cys.elyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaG.daellkeflryrtyhG.campiavqlasiaaWedekhvrenralyrekfaavleilg...avldlelPdasfylWlkv...pdgddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlal 377
                  +e  + +++  +v+ v    e+++  ++a++++ ++  v++P P yq + e a+ ++ +   + +  ++++++   + +++   +++ +l+ ++ P+nPtGa+ls+e++++++++  + d  +   +   +s e+y   +++ +  leaa e     + r + +  +sk  + PGlr G++a  + +l+++ +  + y   c+ +++  la ia  + e+  + n +l ++ + a+++ ++   +++  + P+a+   +++    ++   +af+ +l++++ v  lp +  s   + + P   r+r+ +
  MMETSP1174-20130828|12216_1 223 YETGR-IKSS-DVI-VVTPEEGIYITARAILEPGDD--VIVPWPCYQsLAEVATAIGCTVRRWEPRASDASLEFCVEDLERLCAEKTpKLIVLNFPHNPTGATLSTEDFARVISICMEDDAGVQQPQpwIFSdEMYRGLEHQGTIRLEAACE----CYDRAVSLAGVSKVLSCPGLRIGWLATvNKKLMERLVVLKDYTTiCSSAPSEILALIALRQREEIGNRNLTLIQSNMGALAAFMAeneDIITWRSPRAGSTCFPSLsplVKRSATAFCDDLVARSGVLLLPASVYSELGDTSSPD-RRIRIGF 521
                  44433.4433.344.445689***********9876..889*****9556889999988889999888888777777777777666548999*********************987666654443331122224444434344555666655....4789*********************973678999********87477888888999999999*99999999999987666665551116788899***9988887644457899******************9999877777775.5788765 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     2e-10   7.5e-08     102     267 ..     250     433 ..     202     450 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2e-10
    TIGR03539 102 lgagdtvviPevayPtye.....vgarlagaeava........addlteldp.ekvkliwlnsPanPtGrvlsveelrkvvalarergv.......vvasdecylelgWegeavsvldpevcggdlegllavhslskrsnlagyragfvaG.dealvaellevrkhaGlmvpaPvqaamvaaladdeh 267
                  l++gd v++P   y   +     +g ++ + e+ a        ++dl++l   +++kli ln P nPtG  ls e++ +v+++  e ++        ++sde y +l  +g    +   e + + ++  +++  +sk     g r g++a  +++l+++l+  + ++ +  +aP +     al+++e+
  MMETSP1174-20130828|12216_1 250 LEPGDDVIVPWPCYQSLAevataIGCTVRRWEPRAsdaslefcVEDLERLCAeKTPKLIVLNFPHNPTGATLSTEDFARVISICMEDDAgvqqpqpWIFSDEMYRGLEHQGT---I-RLEAACECYDRAVSLAGVSKVLSCPGLRIGWLATvNKKLMERLVVLKDYTTICSSAPSEILALIALRQREE 433
                  66666666666666543211111333333333333000000114555555444889**************************99988763333333579********88654...3.3344455677889999****************973568*****************9998888888887765 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.6e-09   5.8e-07      90     239 ..     256     416 ..     236     461 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.6e-09
    TIGR03537  90 viygtpgypvyerGalfaggealkvklkkedgfl.leldaveeailret.kivwinyphnptGaeapasylkevaelareygi.......ilasdecyaeiysee.kpasvlevglenvlafhslskrsGmtGyrsgflaG.deelvsalrklrasvGvas 239
                  vi++ p+y      a   g    + + ++ d  l + ++++e+   ++t k++ +n+phnptGa+ +++ + +v+ ++ e +         ++sde y  + ++      +     ++ +++  +sk     G r g la  +++l++ l  l+  + ++s
  MMETSP1174-20130828|12216_1 256 VIVPWPCYQSLAEVATAIGCTVRRWEPRASDASLeFCVEDLERLCAEKTpKLIVLNFPHNPTGATLSTEDFARVISICMEDDAgvqqpqpWIFSDEMYRGLEHQGtIRLEAACECYDRAVSLAGVSKVLSCPGLRIGWLATvNKKLMERLVVLKDYTTICS 416
                  666666665554444444444444444444443325678888877777758999**************************98632333335799999999976652233333345789999****************999735677777766665555444 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.3e-09   1.2e-06      69     257 ..     204     393 ..     179     416 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 3.3e-09
    TIGR03542  69 rGyGpeqGldllreaiaeeeykgridpeeifisdGakcdvarllelfgsdktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakends.......lilfdaayeafisdpslPksiyeiegakec...aieirsfsktlGftGvrlgy 257
                   Gy    Gl+llr++i++++ +gri+++++ +             ++ + + v v  P y    ++a+ +G  +v   + + ++     c+++      l  ek+ ++i+l +P nPtG++l++e++ +++    e+d+        i+ d  y    ++ ++      +e a ec   a+ +   sk l   G+r+g+
  MMETSP1174-20130828|12216_1 204 LGYTESPGLPLLRDEISQSYETGRIKSSDVIVVTPEEGIYITARAILEPGDDVIVPWPCYQSLAEVATAIGC-TVRRWEPRASDASLEFCVEDL---ERLCAEKTPKLIVLNFPHNPTGATLSTEDFARVISICMEDDAgvqqpqpWIFSDEMYRGLEHQGTI-----RLEAACECydrAVSLAGVSKVLSCPGLRIGW 393
                  59999***************************99999999999****************************9.555556666776666677764...5677788789************************99988776211111134444455444444333.....3333333333366666666666666666666 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-07    0.0002     223     334 ..     286     406 ..     244     413 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.4e-07
    TIGR03801 223 katwqytdkelekLkdpkikalfvvn.PsnPpsvaiseesieklakiveek.....rpdLmiltDDvygtfvddfr.slla..elpantilvysfskyfgatGWrlgvialhkdnifDkli 334
                   a+  +  ++le+L  +k   l+v n P nP++ ++s+e  +++++i  e+     +p+  i +D++y    ++ +  l a  e+   ++ +   sk   + G r+g +a+ ++ ++++l+
  MMETSP1174-20130828|12216_1 286 DASLEFCVEDLERLCAEKTPKLIVLNfPHNPTGATLSTEDFARVISICMEDdagvqQPQPWIFSDEMYRGLEHQGTiRLEAacECYDRAVSLAGVSKVLSCPGLRIGWLATVNKKLMERLV 406
                  456688899*****9888766666666********************98752222278899*******999876541555511556789999**********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.49
# Mc/sec: 1465.35
//
Query:       MMETSP1174-20130828|12223_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1184.33
//
Query:       MMETSP1174-20130828|12224_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|12226_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 724.16
//
Query:       MMETSP1174-20130828|12225_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-92  308.6   0.1      2e-92  307.8   0.1    1.3  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
  ------ inclusion threshold ------
      0.015   13.2   0.0       0.07   11.1   0.0    2.0  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
      0.046   11.1   0.4       0.28    8.5   0.0    2.4  4  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.8   0.1   1.5e-95     2e-92       1     334 [.      64     432 ..      64     441 .. 0.93

  Alignments for each domain:
  == domain 1    score: 307.8 bits;  conditional E-value: 1.5e-95
    TIGR02244   1 vfvnreLklekievvGfDlDyTLaqYkseelealiyelakekLveelgYpeellkleydpkfairGLvldkkkgnllKldsfkqikaatyhGlrklskeeveelYgskllsrsneesklklldtlFslpealllaqlvdylddnk...........elaldekqiykdvraaldevhvegslkkkvaedlekyvlrdpklvklLeklkesGkklfLlTnsdykytdlvmkyllgeslke.............kdWrdlFdvvivkakKPkFFteerplrevdvekdslklqevdklekg................kvYsgGslkqleellkvrgkevLYvGDhiysDvlkskkkrgwrtaliieELeeEvkvlk 334
                  vf++r+L++++i+v+G+D+DyTL++Y+ + +e+ +y +ak+ L    +Y   ++ l++ ++ a rGL++dk++gn++K+d+f++++ a +hGl+kl+ +e ++lYg+++++ ++e  ++++++tlFs++e  l+ qlv+ lddn            ++   ++++++   +a+ ++hveg++kk+++ed+ ++++ d +lv +L ++  +G+kl L+Tns+++ytd +m+yl++e++++             +dWr+lFd+viv+a+KP FFt ++p++ v v ++ ++ +e ++ ++g                +vY+gGs++++e+l ++ ++++LYvGDh++ D++  k + +wrt l+++ELe+Ev  l 
  MMETSP1174-20130828|12225_1  64 VFCSRSLNMSDIKVIGYDMDYTLVRYRVNVFESCAYGYAKDVLR---RYGFWVEGLSFLSDIACRGLIVDKDHGNIVKVDRFGYVQDA-MHGLKKLTPSEFTSLYGREMVDLRDE-ARWVFINTLFSVSECSLYMQLVERLDDNSlernsvapfnfNKCNTYNKLFSVASKAIFRAHVEGNMKKEIQEDPARFIELDLELVPTLVDQSLAGRKLALITNSNWEYTDRIMTYLVHEHFSRtgrpastktttltSDWRELFDLVIVSARKPDFFTGRNPVYRVLVPEAVQEGDEGSEGQQGlaqgavmqedfkmregHVYNGGSARMVEKLFDCSSDSILYVGDHVFADLTIAKATLRWRTLLVMQELEKEVLELA 432
                  8****************************************995...455569***********************************.9***********************98.8***************************9*******9999899999************************************************************************99998999*******************************999999887655554444444333334444999999999999******************************************************97765 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.86   1.2e+03      39      51 ..     267     279 ..     252     294 .. 0.79
   2 ?   11.1   0.0   5.1e-05      0.07     101     130 ..     382     411 ..     374     419 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.86
    TIGR01662  39 keGykvvivtNqs 51 
                   +G k++++tN++
  MMETSP1174-20130828|12225_1 267 LAGRKLALITNSN 279
                  57899999**998 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.1e-05
    TIGR01662 101 ealkrlneidakesvvvGDavltDleaakr 130
                  +++++l +++++ +++vGD+v++Dl++ak+
  MMETSP1174-20130828|12225_1 382 RMVEKLFDCSSDSILYVGDHVFADLTIAKA 411
                  45555558******************9986 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.46   6.2e+02      22      40 ..      72      90 ..      68      96 .. 0.80
   2 ?   -3.2   0.1      0.82   1.1e+03      25      35 ..     124     134 ..     119     142 .. 0.76
   3 ?   -2.9   0.0      0.69   9.4e+02      57      71 ..     267     281 ..     260     289 .. 0.80
   4 ?    8.5   0.0    0.0002      0.28      94     127 ..     378     411 ..     368     446 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.46
    TIGR01668 22 kkdikgvvlDkDntlvepd 40
                   dik +  D+D tlv   
  MMETSP1174-20130828|12225_1 72 MSDIKVIGYDMDYTLVRYR 90
                 679999999*****99765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.82
    TIGR01668  25 ikgvvlDkDnt 35 
                   +g+++DkD  
  MMETSP1174-20130828|12225_1 124 CRGLIVDKDHG 134
                  69*******74 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.69
    TIGR01668  57 aaGlkllivSNnage 71 
                   aG+kl+++ N++ e
  MMETSP1174-20130828|12225_1 267 LAGRKLALITNSNWE 281
                  579********9865 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0002
    TIGR01668  94 gkafrralkemgltseqvvvvGDrlfTDvllgnr 127
                  g+++r ++k ++++s+ ++ vGD+ f D+  ++ 
  MMETSP1174-20130828|12225_1 378 GGSARMVEKLFDCSSDSILYVGDHVFADLTIAKA 411
                  5689999**********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.55
# Mc/sec: 1377.49
//
Query:       MMETSP1174-20130828|12234_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00097   16.5   0.2     0.0012   16.3   0.1    1.1  1  TIGR02191 RNaseIII: ribonuclease III


Domain annotation for each model (and alignments):
>> TIGR02191  RNaseIII: ribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.9e-07    0.0012     151     219 .]      84     147 ..      68     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.9e-07
    TIGR02191 151 kdyKtaLqelaqaekkvlpeYelikeegpahdkeFevevvvegeilgsgkgkskkeaeqaaAkaalekl 219
                  k++  +L e+aq+ ++     +l+ +++ a + eF   vvv g+++    + +kk+a  +aAk al++l
  MMETSP1174-20130828|12234_1  84 KNPVAQLNEWAQKGRH-----SLVFQDQGAVAGEFACLVVVDGKAFQAQRAYNKKQAKAEAAKCALKEL 147
                  7788899999995555.....4556666667789*******************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 707.08
//
Query:       MMETSP1174-20130828|12233_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 812.24
//
Query:       MMETSP1174-20130828|12232_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|12235_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-274  910.2  18.6   2.1e-274  910.0  12.9    1.0  1  TIGR01336 psaB: photosystem I core protein PsaB
   7.9e-126  418.9  17.0     1e-125  418.6  11.8    1.1  1  TIGR01335 psaA: photosystem I core protein PsaA


Domain annotation for each model (and alignments):
>> TIGR01336  psaB: photosystem I core protein PsaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  910.0  12.9    1e-277  2.1e-274     300     734 .]       1     434 []       1     434 [] 1.00

  Alignments for each domain:
  == domain 1    score: 910.0 bits;  conditional E-value: 1e-277
    TIGR01336 300 ikdlleakapptsgklglghkglydtinnslhfqlglalaalgvitslvaqhlyslpayafiakdfttqaalythhqyiagflmvgafahgaiffvrdydpeqnkdnvlarllehkeaiishlswvslflgfhtlglyvhndvvvafgtpekqiliepifaqfiqaahgkvlyglnvllssssssafqaarsvwlpgwleainensnslfltigpgdflvhhaialglhttvlilvkgaldargsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwalntigwvtfywhwkhitiwqgnvsqfnesstylmgwlrdylwlnssqlingynpygmnnlsvwawmflfghlvwatgfmfliswrgywqelietlvwahertplanlirwkdkpvalsivqarlvglvhfsvgyvltyaafliastagkfg 734
                  +k++l+a++pp +g+lg gh+glydti+nslh+qlglala+lgv tslvaqh+y++p+y ++akdfttqaalythhqyiagflmvgafahgaiffvrdydpe nkdnvlar+lehkeaiishlswvslflgfhtlgly+hnd vvafg+pekqiliep+faqfiqaa+gk+lyg+nvll+s++s+a  a+ +vwlpgw eain+++nslfltigpgdfl+hhaialglhtt+lilvkgaldargsklmpdkkdfgysfpcdgpgrggtcdisawdafyl++fw+lnti wvtfywhwkh+tiw gn +qfness y+mgwlrdylwl ss+lingynp+gmn+ +vwawmflfghl+watgfmfliswrgywqelietlvwahertplanl+rw+dkpvalsivqarlvgl+hf+vgy+ltyaaf+iast+gkfg
  MMETSP1174-20130828|12235_1   1 MKEILDAHRPP-GGRLGAGHRGLYDTITNSLHMQLGLALASLGVATSLVAQHMYAMPSYVYMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPELNKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYIHNDTVVAFGQPEKQILIEPVFAQFIQAASGKALYGFNVLLASPDSPASVASSKVWLPGWSEAINNEKNSLFLTIGPGDFLIHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIAWVTFYWHWKHMTIWGGNPAQFNESSNYIMGWLRDYLWLSSSPLINGYNPFGMNSQAVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFAVGYILTYAAFVIASTSGKFG 434
                  59*******77.9*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************7 PP

>> TIGR01335  psaA: photosystem I core protein PsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.6  11.8    5e-129    1e-125     322     746 ..       1     427 [.       1     431 [. 0.91

  Alignments for each domain:
  == domain 1    score: 418.6 bits;  conditional E-value: 5e-129
    TIGR01335 322 ikeileahkgp..ltgeghkglyealttswhaqlalnlallgsltiivahhmyamppypylaidyatqlslfthhlwiggflivgaaahaaifmvrdydpsqrynnvldrvirhrdaiishlnwvciflgfhsfglyihndtmralgrsqdmfsdtaiqlqpvfaqwiqnlh........tlapgstapnalastsyvfggevvavggkvallpiklgtadflvhhihaftihvtvlillkgvlfarnsrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynaisvvifhfswkmqsdvwgtvsdagvvthivggnfaqsaitingwlrdflwaqasqviqsyg....sslsaygllflgahfiwafslmflfsgrgywqeliesivwahnklkvapai....qpralsiiqgravgvahyllggiattwaffla 746
                  +keil+ah+ p    g gh+gly+++t s h ql l la lg  t +va+hmyamp y y+a d++tq +l+thh +i gfl+vga ah+aif+vrdydp  +++nvl r++ h++aiishl wv +flgfh++glyihndt+ a+g+++       i ++pvfaq+iq+          +l  +  +p+++as+ + + g   a+++    l +++g  dfl+hh  a+ +h t lil+kg l ar s+l+pdk ++g+ fpcdgpgrggtc++sawd  +l +fwm n+i+ v f++ wk    +wg              +f +s+  i gwlrd+lw  +s +i+ y      s + +  +fl  h+iwa  +mfl+s rgywqelie++vwah++  +a  +    +p alsi+q r vg ah+ +g i t  af+ a
  MMETSP1174-20130828|12235_1   1 MKEILDAHRPPggRLGAGHRGLYDTITNSLHMQLGLALASLGVATSLVAQHMYAMPSYVYMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPELNKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYIHNDTVVAFGQPE-----KQILIEPVFAQFIQAASgkalygfnVLLASPDSPASVASSKVWLPGWSEAINNEKNSLFLTIGPGDFLIHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIAWVTFYWHWKHM-TIWGGNP----------AQFNESSNYIMGWLRDYLWLSSSPLINGYNpfgmNSQAVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVrwrdKPVALSIVQARLVGLAHFAVGYILTYAAFVIA 427
                  59*******7733679************************************************************************************************************************************97.....57899*********86411111111344555677778777777789999**************************************************************************************************65.69*9754..........46999999*******************99533335778899**************************************9999873333588*********************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 1636.66
//
Query:       MMETSP1174-20130828|12240_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|12243_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 317.60
//
Query:       MMETSP1174-20130828|12241_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   54.0   0.0    9.5e-12   42.4   0.0    2.2  2  TIGR01426 MGT: glycosyltransferase, MGT family
     0.0035   14.5   0.0       0.32    8.0   0.0    2.2  2  TIGR00661 MJ1255: conserved hypothetical protein
     0.0035   14.2   0.0      0.037   10.8   0.0    2.2  2  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   6.9e-05     0.095       6     119 ..      97     223 ..      93     237 .. 0.79
   2 !   42.4   0.0   6.9e-15   9.5e-12     265     391 ..     403     530 ..     345     532 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.9e-05
    TIGR01426   6 yGHvnPtLgvveeLvkrGhrVtYaiteefaekveaagAeavlYesaleeedlkee..............nateeelldileklldealsvlp.qleealkedkpDlvvydiaslagkllarklkvPvis 119
                   G v P + ++ ++ ++G +V ++    +++ v + g +  +Y+ ++e   +++                   +++ ++    ++e ++++p +++ea  + +pDl +  + ++ +   a+kl++Pvi 
  MMETSP1174-20130828|12241_1  97 RGDVQPLISLAVGMRAKGYNVAFFAVHPVNQLVDRHGFKCYDYDLDIEV-MMRRVqsvthslpalspsiGFFYATVQTLRDDEFKEKVDAIPdKVLEAHLDFRPDLTIT-SHCMPAISCAEKLHIPVIY 223
                  589**********************************999999999986.33333567789998877762334455566666777888888745999999999999875.5677888899999999985 PP

  == domain 2    score: 42.4 bits;  conditional E-value: 6.9e-15
    TIGR01426 265 kvdpaelgelPkNvevrqyvpqlevLekadllvtHgGmnstmealaagvPlvavPqgadqeltarriaeLglgrvle.keevTaekLreavlavlsddevaerlkkirkeireaGGarrAAdeiekll 391
                   +d + ++   +Nv    + p+  +  + + +v HgG+++   +l+ag P+v+ P + dq++ +  + + g g+v +   ++T ++L ea+l+v sd+++  +  ++ +e+  + G  +  d ie++ 
  MMETSP1174-20130828|12241_1 403 DLDSELIEYAKENVFEMASCPHSWLFPRCSSVVHHGGAGTLAAGLSAGRPMVICPFIFDQQYFGGLVGDKGCGVVTSpAKDLTLQELTEAILKVTSDAQMSVAAGAVGQEMMLEDGVSKTIDFIEEVT 530
                  4555566666789999999******************************************************98761578*****************************************999876 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0038       5.2      68     122 ..     171     227 ..     167     234 .. 0.65
   2 !    8.0   0.0   0.00023      0.32     244     299 ..     427     480 ..     404     502 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0038
    TIGR00661  68 vktlrkkellPk.kalrrev.kiireykpDliv.sDfeyvtavaakllkiPvisisnq 122
                  v+tlr+ e+  k +a+  +v +   +++pDl + s + +  +  a+ l+iPvi i  q
  MMETSP1174-20130828|12241_1 171 VQTLRDDEFKEKvDAIPDKVlEAHLDFRPDLTItSHCMPAISC-AEKLHIPVIYIALQ 227
                  66777777666424555444144458*****772556665555.55579*****9987 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00023
    TIGR00661 244 dlksaeavitsGGfelisEALalgkpllvvPvlgqfEqvsnAvklekLGlgevley 299
                  ++  ++ v+ +GG  +    L+ g+p+++ P    f+q      + + G+g v + 
  MMETSP1174-20130828|12241_1 427 LFPRCSSVVHHGGAGTLAAGLSAGRPMVICPFI--FDQQYFGGLVGDKGCGVVTSP 480
                  5778***************************86..888888899999999988764 PP

>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.039        53       5      58 ..      86     138 ..      83     170 .. 0.78
   2 !   10.8   0.0   2.7e-05     0.037     263     337 ..     438     506 ..     432     525 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.039
    TIGR01133   5 mkkvvlagGGTGG.ifPalAvaeelrkrgvevvllGtkrgleeelvekegiells 58 
                  +k+v+++  G+ G + P +++a  +r++g++v++++     +  lv+++g++ ++
  MMETSP1174-20130828|12241_1  86 PKRVLFVCHGSRGdVQPLISLAVGMRAKGYNVAFFAVHPVNQ--LVDRHGFKCYD 138
                  57899999999888*********************9665544..99988888765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.7e-05
    TIGR01133 263 AGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqke.llteklveklkkllkdearleemaeaa 337
                   GA+t+a  + +g P+++ P+     dq+y   ++ d+g g+v   ++ l+ ++l+e+++k+++d++++     aa
  MMETSP1174-20130828|12241_1 438 GGAGTLAAGLSAGRPMVICPFI--F-DQQYFGGLVGDKGCGVVTSPAKdLTLQELTEAILKVTSDAQMS----VAA 506
                  59*****99************9..3.455668889999999999887779***************6665....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.49
# Mc/sec: 1535.38
//
Query:       MMETSP1174-20130828|12245_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 349.59
//
Query:       MMETSP1174-20130828|12247_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-07   27.0   0.0     0.0059   13.5   0.0    2.3  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
     0.0011   15.8   1.4       0.66    6.7   0.0    3.4  3  TIGR03118 PEPCTERM_chp_1: TIGR03118 family protein
     0.0012   16.5   0.4        2.5    5.9   0.1    4.3  5  TIGR02608 delta_60_rpt: delta-60 repeat domain


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   2.4e-05     0.033      11     124 ..      32     146 ..      24     159 .. 0.81
   2 !   13.5   0.0   4.3e-06    0.0059      17     120 ..     169     275 ..     152     298 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.4e-05
    TIGR03866  11 ekiyvsnekdntisvidletlevvktlkvGerPrGitlskdgklly.vcasdsdavqvldaeteevlkelpsGe.dPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvG 124
                  ++  +s   d+t+ v d++ ++ + +   G+r   + ++ +++  +  c+s +  ++  d+et e   ++  G  +   ++l+p++k+l +   +   v + d e++k +a +  G
  MMETSP1174-20130828|12247_1  32 NNKIISGSVDETVKVWDTALNSDQGKSFEGHRLGVVSVAVNTEGTWcACSSIDSVIRFWDLETGETSASIDEGAlEAWSLALSPHDKFLATGA-QRGAVNIWDAEAKKKMASLTHG 146
                  55567888899*********999999999***9888888777665515777788899**************9974677899******998765.5567999999999999887655 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.3e-06
    TIGR03866  17 nekdntisvidletlevvktlk...vGerP.rGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkll.yianeddalvtvvdiekrkvlae 120
                    kd +i+v d++  ++ + ++   + + P r ++ s+dg+lly +asd+ ++++ d++ ++++ +l sG+    + ++p+ +     +   d++v + d+++r+ l+ 
  MMETSP1174-20130828|12247_1 169 SSKDGSIAVYDVQAETLDHRFSdndAHSMPvRSVAYSPDGRLLY-SASDDMRIHLYDVRCKSLVCSL-SGHASWALSVAPSPNGYgLASGSSDNQVKIWDMRSRECLHC 275
                  56888999999888777666541113344459*********999.79*******************9.5666666666655444314677899**********998864 PP

>> TIGR03118  PEPCTERM_chp_1: TIGR03118 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00048      0.66      17      57 ..     100     140 ..      93     162 .. 0.85
   2 !    4.8   0.0    0.0018       2.5     256     297 ..     157     199 ..     145     202 .. 0.83
   3 ?    0.8   0.0      0.03        41     244     289 ..     237     278 ..     219     297 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00048
    TIGR03118  17 ivdpllknawGlsyaPggifwvastetGtatlysvntdtqa 57 
                   +d +  +aw l+++P  +f  +  + G++ +++++++ ++
  MMETSP1174-20130828|12247_1 100 SIDEGALEAWSLALSPHDKFLATGAQRGAVNIWDAEAKKKM 140
                  57889999*************************99976654 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0018
    TIGR03118 256 fGslsgallv.GnfGdGainafdaasgaflGqlldadnqpvkv 297
                  f  l ++l v G   dG+i+++d ++++   +++d d +++ v
  MMETSP1174-20130828|12247_1 157 FSPLVDQLQVaGSSKDGSIAVYDVQAETLDHRFSDNDAHSMPV 199
                  666677776548889**********************999866 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.03
    TIGR03118 244 naPwGlaiaPe..sfGslsgallvGnfGdGainafdaasgaflGqlld 289
                  +a w l++aP+  ++G +sg        d +++++d +s + l  ++d
  MMETSP1174-20130828|12247_1 237 HASWALSVAPSpnGYGLASG------SSDNQVKIWDMRSRECLHCFAD 278
                  68999999986114444444......4677777777777766665555 PP

>> TIGR02608  delta_60_rpt: delta-60 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.94   1.3e+03       3      18 ..      24      38 ..      22      45 .. 0.67
   2 ?    2.8   0.0     0.017        24       3      20 ..     108     125 ..     107     132 .. 0.84
   3 ?    2.1   0.0     0.027        37       3      16 ..     199     212 ..     198     223 .. 0.87
   4 ?   -2.1   0.0      0.55   7.5e+02       5      22 ..     243     260 ..     241     264 .. 0.75
   5 !    5.9   0.1    0.0018       2.5       1      22 [.     281     301 ..     281     309 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.94
    TIGR02608  3 ayavavqsDGkIlvaG 18
                 +++v+   ++kI+ +G
  MMETSP1174-20130828|12247_1 24 IWSVVWTTNNKII-SG 38
                 6777778888886.45 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.017
    TIGR02608   3 ayavavqsDGkIlvaGys 20 
                  a+++a+ + +k l++G  
  MMETSP1174-20130828|12247_1 108 AWSLALSPHDKFLATGAQ 125
                  89**************64 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.027
    TIGR02608   3 ayavavqsDGkIlv 16 
                  +++va+ +DG++l 
  MMETSP1174-20130828|12247_1 199 VRSVAYSPDGRLLY 212
                  5899*******996 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 0.55
    TIGR02608   5 avavqsDGkIlvaGysdn 22 
                  +va  ++G  l++G+sdn
  MMETSP1174-20130828|12247_1 243 SVAPSPNGYGLASGSSDN 260
                  677778888899998775 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0018
    TIGR02608   1 drayavavqsDGkIlvaGysdn 22 
                  d++++va+ +DG  l+aG  d+
  MMETSP1174-20130828|12247_1 281 DQVWSVAYSPDGASLAAGV-DD 301
                  899***************4.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.53
# Mc/sec: 772.01
//
Query:       MMETSP1174-20130828|12246_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 674.89
//
Query:       MMETSP1174-20130828|12249_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|12251_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-15   53.1   0.0    6.1e-15   52.7   0.0    1.1  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
      1e-13   49.2   0.0    1.4e-13   48.7   0.0    1.2  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
      6e-11   39.8   0.0    1.1e-10   39.0   0.0    1.3  1  TIGR02006 IscS: cysteine desulfurase IscS
    9.9e-10   35.6   0.0    1.4e-09   35.1   0.0    1.1  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    7.7e-05   19.7   0.0    0.00011   19.1   0.0    1.1  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   7.4e-18   6.1e-15     261     361 ..       8     110 ..       2     122 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 7.4e-18
    TIGR03402 261 kalRdrlekgllekipkarvnG.dkekRlpntvnisfefiegeailllldkegiaassGsaCtsgslepsh..vlramgvpaevahGslRlslsrenteedvdk 361
                  +alR +l + l +++p  ++   d ++R+p+ ++i++e +++  ++ +l+   +a s+GsaC s++  +sh  vl+a+g++ e+++G+lRls+++e+t++d+d 
  MMETSP1174-20130828|12251_1   8 RALRTNLDSCLPKSVPVKFLGPlDDSQRVPHIISIAIEGMDAKQLVSFLSP-VLAISAGSACHSSTPSASHtgVLQAIGLSPELSRGTLRLSIGEETTDDDIDC 110
                  78999999999999997766433669********************99986.5899**************9889****************************96 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.7e-16   1.4e-13     267     352 ..       8      98 ..       2      99 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.7e-16
    TIGR03235 267 ralknklldaLkt.levklng..dpaekipnvlnlsidgvnsealivaLkavvavstgsaCssskyepsh..vLkamgldedrlasalrfs 352
                  ral+ +l   L +   vk+ g  d ++++p++++++i+g++++ l+  L +v+a+s+gsaC ss   +sh  vL+a+gl+ +  +++lr+s
  MMETSP1174-20130828|12251_1   8 RALRTNLDSCLPKsVPVKFLGplDDSQRVPHIISIAIEGMDAKQLVSFLSPVLAISAGSACHSSTPSASHtgVLQAIGLSPELSRGTLRLS 98 
                  6677777777766677888774466789************************************9999*9999****************98 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.3e-13   1.1e-10     290     375 ..      31     119 ..       4     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.3e-13
    TIGR02006 290 dleqrvksnlnvsfnyveGeslilalkd.lavssGsactsaslepsy..vlralGlndelahssirftlGrftteeeidyavklvkeav 375
                  d +qrv++++ ++++ ++ + l+  l   la+s+Gsac s++   s+  vl+a+Gl+ el+  ++r+++G  tt+++id a  +  + v
  MMETSP1174-20130828|12251_1  31 DDSQRVPHIISIAIEGMDAKQLVSFLSPvLAISAGSACHSSTPSASHtgVLQAIGLSPELSRGTLRLSIGEETTDDDIDCAGYIFAQGV 119
                  4579*******************9998637*********99766665449*****************************9876666555 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.7e-12   1.4e-09     265     374 ..       8     120 ..       3     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.7e-12
    TIGR03403 265 rklrdkledallelpdvlvvg..drehrvpntilisikgvegeamlwdlnkagiaastgsacasedlea..npvmvaigadkelahtairlslsrftteeeidyaievfkkave 374
                  r+lr +l++ l +   v  +g  d ++rvp  i i+i g++ + ++  l    +a s+gsac s    a    v+ aig + el+  ++rls+   tt+++id a   f + v 
  MMETSP1174-20130828|12251_1   8 RALRTNLDSCLPKSVPVKFLGplDDSQRVPHIISIAIEGMDAKQLVSFL-SPVLAISAGSACHSSTPSAshTGVLQAIGLSPELSRGTLRLSIGEETTDDDIDCAGYIFAQGVA 120
                  567788888887777777777445678**************99987766.5789*********99877622579******************************9998888776 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-07   0.00011     278     367 ..      10     109 ..       5     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.4e-07
    TIGR01977 278 ltekllegLkeikkvkiyGakdaakrvg.vvSltlegldseevaaildekfdivvRaGlHC.aPla.H....ktig...tlatGtiRlslgyfnteeeie 367
                  l+ +l + L +   vk +G+ d ++rv+ ++S+ +eg+d +++ + l+    i   +  H  +P a H    + ig    l++Gt+Rls+g  +t+++i+
  MMETSP1174-20130828|12251_1  10 LRTNLDSCLPKSVPVKFLGPLDDSQRVPhIISIAIEGMDAKQLVSFLSPVLAISAGSACHSsTPSAsHtgvlQAIGlspELSRGTLRLSIGEETTDDDID 109
                  56677778889999*******999999549*******************9988888888854687634222234553223679***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.81
# Mc/sec: 467.67
//
Query:       MMETSP1174-20130828|12255_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|12253_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 731.22
//
Query:       MMETSP1174-20130828|12257_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.75
# Mc/sec: 434.68
//
Query:       MMETSP1174-20130828|12260_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   14.9   3.8      0.013   13.7   2.6    1.7  1  TIGR02449 TIGR02449: TIGR02449 family protein
  ------ inclusion threshold ------
      0.019   10.5   5.6      0.021   10.3   3.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        0.1   10.7   5.8       0.17   10.0   1.1    2.2  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02449  TIGR02449: TIGR02449 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   2.6   9.6e-06     0.013      11      59 ..      15      65 ..       7      68 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.6e-06
    TIGR02449 11 aLleklerLkeeNrlLr..aqektlveERaqLleKNeqArqkveamItrLk 59
                 a le ++rL +eN++Lr  + e++  eE a+  e  e   +  e  I+rLk
  MMETSP1174-20130828|12260_1 15 ATLEACQRLVDENHSLRgrKDEASAFEELAKVKEALEANLREREETILRLK 65
                 5689************83245678888888775555555455577788887 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.9   1.6e-05     0.021     330     415 ..      11      95 ..       2     105 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.6e-05
    TIGR02168 330 skkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleer 415
                  +k   + e+ ++l +e  +l+ + +++ +++ee+++ +e+le++l+e ee + +l++e ae+e + a+++a   + e+++++++ +
  MMETSP1174-20130828|12260_1  11 RKHIATLEACQRLVDENHSLRGRKDEA-SAFEELAKVKEALEANLREREETILRLKDECAEAEGRNAEIAAARDSSESRISEIALE 95 
                  444444455555555555555444433.3455555566666666666666666666666666666666666666666666555544 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.019        26      73      95 ..       9      31 ..       1      37 [. 0.73
   2 ?   10.0   1.1   0.00012      0.17      59      92 ..      36      69 ..      32      74 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
    TIGR03495 73 aeallaqrekrierLlreneelR 95
                 ++++     +  +rL++en  lR
  MMETSP1174-20130828|12260_1  9 LRRKHIATLEACQRLVDENHSLR 31
                 5555555667789********99 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00012
    TIGR03495 59 neeaqaqLrqqlaqaeallaqrekrierLlrene 92
                 +++a ++L + ++ +ea l++re++i rL++e +
  MMETSP1174-20130828|12260_1 36 EASAFEELAKVKEALEANLREREETILRLKDECA 69
                 556678999**********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 399.74
//
Query:       MMETSP1174-20130828|12261_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-22   76.1   0.0    5.2e-22   76.0   0.0    1.0  1  TIGR00871 zwf: glucose-6-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00871  zwf: glucose-6-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.3e-25   5.2e-22     252     339 ..       1      85 []       1      85 [] 0.96

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 1.3e-25
    TIGR00871 252 PvsldadeirdekvkvlkalrkiekedekvvrgqYaagevqGksvkgyleeegvdkdsktetfvAlkleidneRWagvPfylrtGKrl 339
                  P+s +a++ +  kv++lka+++++k+ ++  +gq+ a++    +++gyle+egv++dsk +tf+A+ l++ neRW+gvPf++++GK l
  MMETSP1174-20130828|12261_1   1 PMSNSAEDTQRAKVELLKAVETLDKN-SDAFLGQFSANTYL--EEEGYLEDEGVPNDSKYPTFAAVVLKVHNERWEGVPFVMKAGKGL 85 
                  88999********************9.9999****999887..99*****************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|12258_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.62
# Mc/sec: 819.61
//
Query:       MMETSP1174-20130828|12262_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 733.27
//
Query:       MMETSP1174-20130828|12263_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 246.95
//
Query:       MMETSP1174-20130828|12267_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|12264_1  [L=903]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.14s 00:00:00.88 Elapsed: 00:00:00.93
# Mc/sec: 1281.57
//
Query:       MMETSP1174-20130828|12268_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.54
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|12271_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.53
# Mc/sec: 241.56
//
Query:       MMETSP1174-20130828|12272_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 585.70
//
Query:       MMETSP1174-20130828|12275_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|12273_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-26   91.5   0.0    3.7e-26   89.7   0.0    1.7  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    4.5e-10   37.2   0.0    5.8e-10   36.8   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
  ------ inclusion threshold ------
      0.031   11.8   0.1      0.057   11.0   0.0    1.4  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   2.7e-29   3.7e-26      24     185 .]       3     177 ..       1     177 [. 0.82

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 2.7e-29
    TIGR03634  24 gnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelr.....rkkkis.........vkalatllsnllksskflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdgv 185
                  g+++ + + kK+++++++i   +aG+ +da++++ ++   ++  +++     ++ + s         v a+ tll n l++s+       l++gGvd+egp+ly++ + Gs+ + ++ ++GsGs+ al+vLe+e++++l+l+ ak+l+  ai + i+ D  sG  id++vi+++gv
  MMETSP1174-20130828|12273_1   3 GDIICDTRCKKIHRLAPNIFCCGAGTAADAEHVTATVACVLERARMEhhlvqSSSNPSdgaieplsrVVAAHTLLKNRLYGSRG-SCECALILGGVDSEGPALYQIHQHGSSDQTSFGSQGSGSMAALAVLESEWRQGLDLSAAKELVRDAIAAGIANDLGSGSSIDLMVIDSNGV 177
                  78999**************************99988765544444431110044443322211221234555677777777776.67899**********************************************************************************9986 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   4.2e-13   5.8e-10      55     214 ..       7     176 ..       2     191 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 4.2e-13
    TIGR03633  55 eaesiekifkiDdhvgaataGlvaDarv.......lidrarveaqvnr.ltYdepievevlakkvadlkqqytqvGGvrP.fGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeel.kaeevevavvevee 214
                    +  +ki+++   + ++ aG +aDa         +++rar+e    +  +  +   +e l++ va ++    +  G r     al+++Gvd++++ l++    G   +    + G+g+ ++l++le+e+++ l+l+ a el  +a+a+ + ++l + +++++ v++++ 
  MMETSP1174-20130828|12273_1   7 CDTRCKKIHRLAPNIFCCGAGTAADAEHvtatvacVLERARMEHHLVQsSSNPSDGAIEPLSRVVAAHTLLKNRLYGSRGsCECALILGGVDSEGPALYQIHQHGSSDQTSFGSQGSGSMAALAVLESEWRQGLDLSAAKELVRDAIAAGIANDLgSGSSIDLMVIDSNG 176
                  556789*******************97522222225789998876555045556789***********9999998888862679****************************************************************9987665267889999999865 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.2e-05     0.057     128     173 ..     110     155 ..      95     172 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.2e-05
    TIGR03690 128 ggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealyd 173
                   g+++++++ s GsGs+ a + l   ++++l+ + a +++ +a+  
  MMETSP1174-20130828|12273_1 110 HGSSDQTSFGSQGSGSMAALAVLESEWRQGLDLSAAKELVRDAIAA 155
                  478999**************************99998887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 867.93
//
Query:       MMETSP1174-20130828|12278_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|12284_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 355.80
//
Query:       MMETSP1174-20130828|12280_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|12286_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
         10    4.6   9.4       0.82    8.1   0.0    2.7  3  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.43   1.7e+03      26      31 ..      32      37 ..      30      43 .. 0.59
   2 ?    1.4   1.0     0.025     1e+02       7      18 ..      55      67 ..      53      67 .. 0.64
   3 ?    8.1   0.0    0.0002      0.82       5      20 ..      75      94 ..      74      95 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.43
    TIGR03901 26 alrRRR 31
                 al+R R
  MMETSP1174-20130828|12286_1 32 ALGRKR 37
                 444433 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.025
    TIGR03901  7 ggaggagp.galg 18
                 ++++++++ g++g
  MMETSP1174-20130828|12286_1 55 TDTAPSPGdGGWG 67
                 5666666668886 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0002
    TIGR03901  5 saggaggagp....galgLl 20
                 s++++++ +p    ++l+Ll
  MMETSP1174-20130828|12286_1 75 SSDSDDDQPPlpppWLLALL 94
                 66777777777667888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 537.06
//
Query:       MMETSP1174-20130828|12282_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 1606.82
//
Query:       MMETSP1174-20130828|12288_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1218.70
//
Query:       MMETSP1174-20130828|12291_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|12290_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1038.55
//
Query:       MMETSP1174-20130828|12289_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|12293_1  [L=1090]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-33  114.5   0.0    5.6e-24   82.7   0.0    3.4  3  TIGR02037 degP_htrA_DO: peptidase Do
    1.3e-12   45.3   0.0    6.2e-11   39.8   0.0    3.2  3  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    5.9e-08   29.8   0.0    6.1e-05   19.9   0.0    2.3  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
    1.2e-05   22.3   0.0       0.07   10.0   0.0    2.7  3  TIGR00225 prc: C-terminal processing peptidase
    0.00038   17.4   0.0       0.41    7.4   0.0    2.9  3  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   6.8e-27   5.6e-24      59     416 ..     138     535 ..      98     555 .. 0.74
   2 ?   -1.5   0.0      0.25     2e+02      59      80 ..     638     660 ..     624     701 .. 0.70
   3 !   27.3   0.0   4.3e-10   3.5e-07     275     424 ..     893    1031 ..     887    1044 .. 0.79

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 6.8e-27
    TIGR02037  59 eslGSGviisad.gyvlTNnHvvdgakei.kvklsdgrefkaklvgkDektDiAvlkieak..kklpvvklg....dsdklrvGdlvlAiGnPfglgetVtaGivSAlgrsglnked.....yeeF.IQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvk..........iqevtkdlaksl..glekakGalv.aevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlk................eaeeekasseks.........ekkellglsvadlseeaakk.kkskeekkgvv..vtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkk 416
                   s  +G++i+a+ g++lTN Hvv     + +  + +++e+  + v +D+ +D  vl+ + +  ++l++ ++     d ++ rvG  +  +Gn  g + t++aG+   l r     ++     ++ F  Q   +   G SG p++n +G+v+ +N+a     G  +  +F +P + vk+ v+ +++++ v rg L  +             +++++   +   le++ G lv +++++ +pA++  l+ GD++l++ gk i+++ dl+e + + ++g++v+l++lR g++k+   +++                           +         +  ++++   ++ se+++++ + +++++ g++  v  ++++++  +ag+  g +i s+++ e  +v+ l+++l+++ ++
  MMETSP1174-20130828|12293_1 138 ASQATGFVIDAEkGLILTNRHVVCPGPIVaEAVFVNHEEVPVRAVYRDPVHDFGVLQYDPSrlRHLSAQAIKslelDPKAPRVGMDIRVVGNNAGEKLTISAGVLARLDRAAPVYGRncyndFNTFyFQAASSTSGGSSGSPVLNKEGKVVALNAAGKV--G--TAASFYLPLDRVKRAVNLIREGKPVLRGSLQTTfvhrpfneltRLGLDPETEAGVreRLEEEVGMLVvQSLVPMGPADQ-LLQPGDILLRLGGKLITRFCDLEEIL-DDSAGSRVTLSVLRGGEKKQFVCEVQdlhsitpseylemgdsV--F-------NnlsyhqarnHILPVPSSVSSNHSETTTNHhAPDRGQQPGMLtgVYVAHAGHMLRSAGIATGSLIQSIGDVETLNVQALEAALSALPDG 535
                  55678*******9**********876655256677999********************98766445544443333488899*****************************95443334533433333899999*********************97333..3..3469**************************999443332221111122233222211345556777526799*****98.5*********************8755.5679**********************88888877777666431..2.......02223222333333333333344433333333334444443322555566789999************************999977655 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.25
    TIGR02037  59 eslGSGviisad.gyvlTNnHvv 80 
                  e  G+Gv+++++ g+v+     v
  MMETSP1174-20130828|12293_1 638 EFKGTGVVVDTEkGLVVVDRNTV 660
                  6679******9989888665555 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 4.3e-10
    TIGR02037  275 aGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlllve 424 
                     l+ GDv+l v+ k+++++++ + a++     ++v +++lR g++++  ++     ++++    se   ++g+ +++  ++a +  +++ + +gv v + +++spa+  gl+++  i++v+  +  ++ +l  +++++k++e++   ++
  MMETSP1174-20130828|12293_1  893 TSLEDGDVLLTVDAKPVQTFREAELAVSG---KDSVMVEVLRGGQRVTTLINTVGLGTDET----SEILLWAGAVLQKPPQAAGR--QRAVSREGVYVASLTRGSPANWYGLQPTCRIIEVDGLPTPNLTDLLTAVRSKKDGESM--RIK 1031
                   5799******************9999875...579*********99877665443333332....24588888888887755544..3577779*******************************************66665554..444 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   7.6e-14   6.2e-11      40     344 ..     102     425 ..      87     431 .. 0.72
   2 ?    0.4   0.0     0.076        62     292     341 ..     891     937 ..     886     943 .. 0.80
   3 ?   -1.0   0.0      0.19   1.6e+02     278     328 ..     977    1027 ..     967    1042 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 7.6e-14
    TIGR02038  40 ideveisfnkavrraaPavvnvynrslsenslnklsiqglGsGvimskeGyiltnkhvikkadqivval.qdGrvfeaelvGsdsltdlavlkieadnlptiPlna......d.rkpkvGdvvlaiGnPynlGqtitqGiisatGrngl..ssvGrqnf....lqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGr.virGylGvd..gedinslsaqllg...........ledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkqlelpv 344
                   ++ve s+++++ ++ P++v +   s    ++      +    vi  ++G iltn+hv+     +  a+  + + +  + v  d+  d+ vl+ +   l  +   a      d + p+vG  +  +Gn      ti+ G+++   r++     + + +f    +q+ ++   G sG  ++n +G++v +n++       + +   +f +P++  ++ +  lir+G+ v+rG l      ++ n l+  +l+            e+++ +vv+ + P gPa +  l++ d++l+l +k ++   + ++++ +   gs+v++ vlr g++ ++  
  MMETSP1174-20130828|12293_1 102 DGDVERSWQRTIDESIPSIVSLKVNSTRAFDTTMPGASQATGFVIDAEKGLILTNRHVVCPGPIVAEAVfVNHEEVPVRAVYRDPVHDFGVLQYDPSRLRHLSAQAikslelDpKAPRVGMDIRVVGNNAGEKLTISAGVLARLDRAAPvyGRNCYNDFntfyFQAASSTSGGSSGSPVLNKEGKVVALNAAG------KVGTAASFYLPLDRVKRAV-NLIREGKpVLRGSLQTTfvHRPFNELTRLGLDpeteagvrerlEEEVGMLVVQSLVPMGPADQ-LLQPGDILLRLGGKLITRFCD-LEEILDDSAGSRVTLSVLRGGEKKQFVC 425
                  46778899999999999999887777666666655555555568999************987766655425778889999************99888765554333111211225799**99******999999*******988777632333444444333379999999999*************999764......5566679999999888876.5788887699998754322455555554333211111111111467788899********865.79*********9987766555.677888899************9987655 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.076
    TIGR02038 292 aragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkqle 341
                  a + l   dv+l +d k+v++ +e    v+       v+v vlr g++++
  MMETSP1174-20130828|12293_1 891 AMTSLEDGDVLLTVDAKPVQTFREAELAVS---GKDSVMVEVLRGGQRVT 937
                  45678999***********99999776655...56789999999988765 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.19
    TIGR02038  278 rgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgsk 328 
                   +g+ v  +   +Pa   gl++   i+++d+ +++   +l+  v   + g+ 
  MMETSP1174-20130828|12293_1  977 EGVYVASLTRGSPANWYGLQPTCRIIEVDGLPTPNLTDLLTAVRSKKDGES 1027
                   699999999*********************999999988888887777765 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00049       0.4     142     209 ..     375     444 ..     346     454 .. 0.70
   2 !   19.9   0.0   7.5e-08   6.1e-05     143     257 ..     893    1033 ..     886    1049 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00049
    TIGR00054 142 eakiedgdeilsvdgkkikdfkdvrkqlaeka.gevsveila..erenitleeekelkelgpkielvlsdv 209
                   + +++gd++l + gk i+ f d+++ l + a + v++ +l+  e+++++ e++ +l+ ++p+  l + d+
  MMETSP1174-20130828|12293_1 375 DQLLQPGDILLRLGGKLITRFCDLEEILDDSAgSRVTLSVLRggEKKQFVCEVQ-DLHSITPSEYLEMGDS 444
                  445677888888888888888888888887775566677777777777777777.7777777666665555 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 7.5e-08
    TIGR00054  143 akiedgdeilsvdgkkikdfkdvrkqlaekagevsveila.ere.nitleeeke.........................lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvken.peksleikve 257 
                     +edgd++l+vd k ++ f++++  +  k  +v+ve+l+   +   tl ++++                          ++ + +  + ++ ++  spa+  Gl++  +i+++dg +  + +dl ++v+++ +++s+ ik e
  MMETSP1174-20130828|12293_1  893 TSLEDGDVLLTVDAKPVQTFREAELAVSGK-DSVMVEVLRgG-QrVTTLINTVGlgtdetseillwagavlqkppqaagRQRAVSREGVYVASLTRGSPANWYGLQPTCRIIEVDGLPTPNLTDLLTAVRSKkDGESMRIKQE 1033
                   679********************9988765.789****9962.32333333334455555667777777777777777444445555677999************************************97526788888754 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00016      0.13      52     131 ..     351     427 ..     341     438 .. 0.85
   2 ?   -3.6   0.0       1.2   9.5e+02      72     122 ..     888     933 ..     877     939 .. 0.69
   3 !   10.0   0.0   8.5e-05      0.07      61     128 ..     976    1040 ..     958    1067 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00016
    TIGR00225  52 GiGiqvqmeddeivivsplegsPAekagikpgDkIikvdgk.svagmelddavelirGkkgtkvkleieragkkktlelel 131
                  G+  ++++e + +v+ s++  +PA +  ++pgD +++++gk  +   +l+++ +      g++v l+++r+g+kk++  e+
  MMETSP1174-20130828|12293_1 351 GVRERLEEEVGMLVVQSLVPMGPADQ-LLQPGDILLRLGGKlITRFCDLEEILD---DSAGSRVTLSVLRGGEKKQFVCEV 427
                  77778899999*************87.5*************4455677887766...578899*********999987665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
    TIGR00225  72 gsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleierag 122
                  + PA  + ++ gD ++ vd k+v++ +  +a  ++ Gk   +v +e++r+g
  MMETSP1174-20130828|12293_1 888 DFPAMTS-LEDGDVLLTVDAKPVQTFR--EAELAVSGKD--SVMVEVLRGG 933
                  5676654.8999999****99999876..4445566765..4556666655 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 8.5e-05
    TIGR00225   61 ddeivivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtkvkleieragkkktle 128 
                   ++ + + s+ +gsPA+  g++p  +Ii+vdg ++   +l d+  ++r kk+ + +++i++++ + +++
  MMETSP1174-20130828|12293_1  976 REGVYVASLTRGSPANWYGLQPTCRIIEVDGLPT--PNLTDLLTAVRSKKDGE-SMRIKQEDLRGNVQ 1040
                   457899*************************876..57889999999888765.55555555444444 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0005      0.41     131     173 ..     378     420 ..     369     434 .. 0.89
   2 !    6.3   0.0     0.001      0.83     129     194 ..     893     956 ..     887     958 .. 0.85
   3 ?   -2.2   0.0      0.39   3.2e+02     124     167 ..     988    1032 ..     985    1046 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0005
    TIGR02860 131 iqvGDlilkvngekikeeedvaklineaggeklkltikRkkkk 173
                  +q GD++l++ g+ i +  d++++++++ g +++l + R+++k
  MMETSP1174-20130828|12293_1 378 LQPGDILLRLGGKLITRFCDLEEILDDSAGSRVTLSVLRGGEK 420
                  789************************************9986 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.001
    TIGR02860 129 agiqvGDlilkvngekikeeedvaklineaggeklkltikRkkkkiekklkpvkekeekkyriGly 194
                  + ++ GD++l v+ +++++ ++ +  +  +g+ ++ +++ R+++++++ ++ v    +++  i l+
  MMETSP1174-20130828|12293_1 893 TSLEDGDVLLTVDAKPVQTFREAELAV--SGKDSVMVEVLRGGQRVTTLINTVGLGTDETSEILLW 956
                  56899****************998777..57889999*************9998877777777666 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.39
    TIGR02860  124 sPaeeagiqvGDlilkvngekikeeedvaklineag.geklklti 167 
                   sPa+  g+q   +i++v+g +  + +d+ + +++++ ge+++++ 
  MMETSP1174-20130828|12293_1  988 SPANWYGLQPTCRIIEVDGLPTPNLTDLLTAVRSKKdGESMRIKQ 1032
                   799999999999***************999998777699988864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1090 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.19s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 2055.26
//
Query:       MMETSP1174-20130828|12302_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|12304_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 776.85
//
Query:       MMETSP1174-20130828|12308_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 407.97
//
Query:       MMETSP1174-20130828|12307_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-05   19.9   2.1    8.7e-05   19.4   1.4    1.2  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    0.00059   16.8   2.2    0.00083   16.3   1.5    1.2  1  TIGR03828 pfkB: 1-phosphofructokinase
    0.00067   16.9   0.8    0.00097   16.4   0.5    1.2  1  TIGR02152 D_ribokin_bact: ribokinase
     0.0068   13.4   3.3     0.0088   13.0   2.3    1.1  1  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.4   8.5e-08   8.7e-05     240     282 ..      88     130 ..      79     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.5e-08
    TIGR03168 240 kvevvstvGAGDsmvAgfllalekglsleealrlavAagsaaa 282
                  +++vv+ +GAGD++vA+ ++++ +g++l  a+  a+Aa+  a+
  MMETSP1174-20130828|12307_1  88 TGDVVNVTGAGDAFVAAAVWRVLHGEPLSAAIGPALAAARVAI 130
                  678****************************999999886654 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.5   8.1e-07   0.00083     240     282 ..      88     130 ..      79     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.1e-07
    TIGR03828 240 kievkstvGAGDsmvAgfllalekglsleealrlavAvgaaaa 282
                  +++v++ +GAGD+ vA+ ++ + +g++l +a+  a+A++  a+
  MMETSP1174-20130828|12307_1  88 TGDVVNVTGAGDAFVAAAVWRVLHGEPLSAAIGPALAAARVAI 130
                  689**************************99999988876554 PP

>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   9.5e-07   0.00097     241     281 ..      90     130 ..      85     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 9.5e-07
    TIGR02152 241 kavDttaAGDtFigalavaLaegksledavrfanaaaalsV 281
                  ++v  t+AGD+F++a +  + +g+ l++a+  a aaa +++
  MMETSP1174-20130828|12307_1  90 DVVNVTGAGDAFVAAAVWRVLHGEPLSAAIGPALAAARVAI 130
                  68999*******************************99987 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.3   8.6e-06    0.0088     256     298 ..      89     131 ..      78     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.6e-06
    TIGR02198 256 kevyDVtGAGDtViavlalalaagasleeaaelaNaaagvvvg 298
                   +v+ VtGAGD+ +a+    + +g+ l  a+  a aaa v++g
  MMETSP1174-20130828|12307_1  89 GDVVNVTGAGDAFVAAAVWRVLHGEPLSAAIGPALAAARVAIG 131
                  589***********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|12312_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.65
# Mc/sec: 414.24
//
Query:       MMETSP1174-20130828|12310_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.75
# Mc/sec: 679.30
//
Query:       MMETSP1174-20130828|12314_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.68
# Mc/sec: 184.40
//
Query:       MMETSP1174-20130828|12317_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.90
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|12320_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|12323_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    4.2  10.6        2.4    4.2   7.4    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.4   0.00057       2.4     195     280 ..      14     106 ..       1     192 [. 0.52

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00057
    TIGR00934 195 lvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata.kirdk........i 280
                   ++++++++++ + ns+  +++t+++ ++++ +  +s   +++++++s++ +++++s+ ++p +  ++++++ +k  + + + r+k        i
  MMETSP1174-20130828|12323_1  14 NNNKNDSSNSYCTSNSNTNNTNTNNNTNHNPTNNRNS--SSNRNNSNSNDSSSSIGSSSLHPGQPVSPQTKATKKRSGPSaRHRKKklgpksdvI 106
                  2234444455555555555555555555554443333..33344666667777777777777776666666665554433144444444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 673.48
//
Query:       MMETSP1174-20130828|12322_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1691.11
//
Query:       MMETSP1174-20130828|12327_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 753.44
//
Query:       MMETSP1174-20130828|12329_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-10   37.3   0.0    1.1e-09   36.4   0.0    1.4  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    1.2e-07   29.1   0.5    4.7e-06   23.9   0.1    1.8  2  TIGR03448 mycothiol_MshD: mycothiol synthase
    1.8e-05   21.3   0.0    2.8e-05   20.7   0.0    1.2  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   8.1e-13   1.1e-09      58     114 ..      28      84 ..      24      88 .. 0.96
   2 ?   -3.6   0.0       1.9   2.6e+03      96     102 ..     103     109 ..      93     118 .. 0.60

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 8.1e-13
    TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfke 114
                  + n+av+++ +++G+G +L+++ +  a e +  ei+L V ++N+ Aq+LY+klg++ 
  MMETSP1174-20130828|12329_1  28 VANLAVSKKLRRRGVGAKLVRRTEACASEWEYDEIVLLVDAENEPAQRLYNKLGYET 84 
                  789****************************************************86 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.9
    TIGR01575  96 VResNva 102
                  VR+ Nva
  MMETSP1174-20130828|12329_1 103 VRATNVA 109
                  6666654 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   7.2e-05     0.098      71      98 ..      25      52 ..      12      58 .. 0.83
   2 !   23.9   0.1   3.5e-09   4.7e-06     234     287 ..      31      84 ..      25      88 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.2e-05
    TIGR03448 71 dsemaElvvhPaaRrrGigkalvralla 98
                  + +a+l+v  + RrrG+g++lvr + a
  MMETSP1174-20130828|12329_1 25 TPLVANLAVSKKLRRRGVGAKLVRRTEA 52
                 56689******************98866 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 3.5e-09
    TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtv 287
                  ++v+++ ++rG+G  L++      +e +  +++L v+a+ne A r+Y+kLg+++
  MMETSP1174-20130828|12329_1  31 LAVSKKLRRRGVGAKLVRRTEACASEWEYDEIVLLVDAENEPAQRLYNKLGYET 84 
                  689999*************999999999************************97 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.1e-08   2.8e-05     160     215 ..      30      85 ..      20      95 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.1e-08
    TIGR03103 160 alavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrri 215
                   lav+++ ++ GvG +lvr+      + +   + l v  +ne a +ly+klg++ +
  MMETSP1174-20130828|12329_1  30 NLAVSKKLRRRGVGAKLVRRTEACASEWEYDEIVLLVDAENEPAQRLYNKLGYETL 85 
                  59******************9999999999999999999**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.62
# Mc/sec: 278.88
//
Query:       MMETSP1174-20130828|12330_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-21   72.3   0.0    7.5e-21   72.0   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      5e-15   53.0   0.0    5.8e-15   52.8   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    6.7e-10   35.1   0.0    2.5e-09   33.2   0.0    1.8  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.6e-08   30.0   0.1    4.3e-08   29.7   0.0    1.1  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.8e-07   27.6   0.0    2.6e-07   27.1   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B
    2.2e-07   28.1   0.0    2.9e-07   27.7   0.0    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    1.5e-06   25.1   0.0    3.2e-05   20.6   0.0    2.0  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    4.4e-05   20.5   0.0      0.034   10.9   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.001   15.2   0.0     0.0071   12.4   0.0    1.9  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
  ------ inclusion threshold ------
      0.028   10.5   0.0       0.04    9.9   0.0    1.2  1  TIGR03714 secA2: accessory Sec system translocase SecA2


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.8e-23   7.5e-21      99     330 ..      65     312 ..      39     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 1.8e-23
    TIGR01389  99 laagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGh.....DFRpeYkrlgelaerfpkap.vialtatadaevredi.......vekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkke...reksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                   +a  ++++  +P rl+     e+l+  +++l+ +Dea  +   G      D   +Y   g+ +  + ++  v+ +tat  ++vr+         +++L +++ + + ++ +  + +f    +++k++ l + l+++   +++  +++a+++++v+ l+++L ++gi +   h+  s++ R++a++kF+  ++ v++at     G+d   v +v+ +d P+++e+y    GR GR G+  +++++y++
  MMETSP1174-20130828|12330_1  65 SDAHGIDVVIATPGRLQDLLQAEALTLGDVSLFVMDEADRMLDMGFepqisDIFKNYLLGGKTRRDLGQDLqVLFFTATWPKSVRQMAstflladAARLMIAQGDGQLTANKSVEQIFLEKADSEKDEALFKLLTTDsvdDNDKVLVFANTKRRVDYLTKMLWEEGIGVCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRIGRTGRAGKSGKSVTFYNH 312
                  345669999999*****99999**********************973333366667888888888898888799**********99651112222356777777778888888888888888999999999999876221458899****************************************************************************************************85 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.4e-17   5.8e-15     129     332 ..      95     312 ..      32     332 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.4e-17
    TIGR00614 129 tliavDeahCisqWGh.....DfRsdykalgsLkqklP.svpviaLtatasssvreDilklLklkkpqvtitsfd.....Rpnlkyeveekks.kiledllkfiv..kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyap 332
                  +l+++Dea  + + G      D  ++y   g+ ++ l  ++ v+  tat  +svr+ + + L    +  +i+  d      + +     ek   +  e l k+++     + +  +++ +++++v+ +++ L ++g+     h + ++++r++  kkf++ e  v++at     G++   v +v+ ++ p+++e+Y   +GR GR g   ++v fy++
  MMETSP1174-20130828|12330_1  95 SLFVMDEADRMLDMGFepqisDIFKNYLLGGKTRRDLGqDLQVLFFTATWPKSVRQMASTFLLADAARLMIAQGDgqltaNKSVEQIFLEKADsEKDEALFKLLTtdSVDDNDKVLVFANTKRRVDYLTKMLWEEGIGVCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRIGRTGRAGKSGKSVTFYNH 312
                  56666666666666642222244455555566666665246777778888888888777777777666666655511111122333334444335566677777743233445569*****************************************************9999*******************************************85 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   6.2e-12   2.5e-09     242     346 ..     200     300 ..       8     313 .. 0.66

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 6.2e-12
    TIGR04121 242 leeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                   + ++++  +lvF Nt+ + ++l ++L+e        +   Hg  +++ R++  +++ ag+  ++++T     G+D + v  v++  sp+ v   + RiGR++ +
  MMETSP1174-20130828|12330_1 200 TDSVDDNDKVLVFANTKRRVDYLTKMLWEEGIG----VCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRIGRTGRA 300
                  467999*********************986555....66679***********************************************************9865 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.1e-10   4.3e-08     139     292 ..     126     284 ..      62     299 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.1e-10
    TIGR01970 139 dvqsalreDLkilimsatLdge....rlselldeapvv.eseGr.....sfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsgla 292
                  + +  l +DL++l   at  ++    + + ll +a+++  ++G         ve ++l+ +++e+ ++++ + ++    ++ + vLvf   ++ +  ++++L     +  + +c ++G+ + ++++ra+k   aG   v++at++a   l i+Gv  v++    
  MMETSP1174-20130828|12330_1 126 KTRRDLGQDLQVLFFTATWPKSvrqmASTFLLADAARLmIAQGDgqltaNKSVEQIFLEKADSEK-DEALFKLLTTDSVDDNDKVLVFANTKRRVDYLTKMLW----EEGIGVCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSP 284
                  45778999*********975431110334477777765256775112223579999988777666.555666666666678899****877776666665555....57799*******************************************999976555 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.2e-10   2.6e-07     438     556 ..     201     315 ..     181     323 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.2e-10
    TIGR00631 438 ervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadkite 556
                  + v+ n++vlv + tk+  + lt+ l e gi v  +h +    +r + ++++ +ge  v++  ++   GlD+  v+ v  +D+      r+ ++ +  iGr  r   +Gk + +++++ +
  MMETSP1174-20130828|12330_1 201 DSVDDNDKVLVFANTKRRVDYLTKMLWEEGIGVCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDS-----PRDVETYVHRIGRTGRAgKSGKSVTFYNHVYD 315
                  467899**************************************************************************997.....6999999999**99997357998888888765 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.1e-10   2.9e-07     155     324 ..     134     305 ..      89     323 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 7.1e-10
    TIGR01587 155 dvkillmsAtlpkllkeylekielveenealdlke....ekrfenqrisliekdkleeisslerl.lealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapid..sLiQRlGRlaRygrkir 324
                  d ++l  +At pk +++++    l     ++  +     +  ++ ++i l+++d+++++   + l  ++++++ kvl+++Nt +r  +l + l e++    +  +H+  ++ dr++     lk++   e  v++aT v+  +lDi  v  ++   +p d    + R+GR  R g+  +
  MMETSP1174-20130828|12330_1 134 DLQVLFFTATWPKSVRQMASTFLLADAARLMIAQGdgqlTANKSVEQIFLEKADSEKDEALFKLLtTDSVDDNDKVLVFANTKRRVDYLTKMLWEEGIG--VCGVHGDKSQDDRNRA----LKKFVAGETPVMIATDVASRGLDIKgVTHVVNFDSPRDveTYVHRIGRTGRAGKSGK 305
                  5679999***********99999986666555444788856666788889999999999999988899**************************99997..999*********9877....************************746777777888763368899999999877655 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.022       9.2     283     368 ..      14     104 ..      12     144 .. 0.79
   2 !   20.6   0.0   7.9e-08   3.2e-05     458     563 ..     203     310 ..     170     320 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.022
    TIGR00643 283 sGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeia.sGeielvvGThallqekve.....fkeLalviiDEQhr 368
                  +G  ++++aPT  LA Q   +++++ +   + + +  g  ++++  +++ + + +  i++v+ T   lq+  +     + +++l ++DE  r
  MMETSP1174-20130828|12330_1  14 AGPSCLVLAPTRELALQIHGECTKFGAG-CVAICVYGGAPRTAQIDAIRRSQSdAHGIDVVIATPGRLQDLLQaealtLGDVSLFVMDEADR 104
                  678899****************998887.589999999999988888776554145699999997766655440000055556677777666 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 7.9e-08
    TIGR00643 458 ieesekl.elkaaealleelkkafpklnval..lhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva 563
                  +++ +k+   ++ +  + +l+k++ +  +++  +hg  ++d+++++l++F ++e+ +++aT v   G+d+  +t +v  d+ R   +  H + GR gR  k ++ +  +
  MMETSP1174-20130828|12330_1 203 VDDNDKVlVFANTKRRVDYLTKMLWEEGIGVcgVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRI-GRTGRAGKSGKSVTFY 310
                  6666665356677788888999885555554338*************************************************999999998.9999998887776555 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00084      0.35      57     144 ..      18     104 ..      14     122 .. 0.78
   2 !   10.9   0.0   8.4e-05     0.034     296     393 ..     214     310 ..     142     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00084
    TIGR04095  57 vvvvvPykhLveqWakeaekFglepil..ayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahn 144
                   +v++P ++L+ q   e+ kFg   ++   y+++ r ++++ +++++ +s a+ + ++i+t   l++   q+   +l +  l++ Dea  
  MMETSP1174-20130828|12330_1  18 CLVLAPTRELALQIHGECTKFGAGCVAicVYGGAPR-TAQI-DAIRRSQSDAHGIDVVIATPGRLQDL-LQAEALTLGDVSLFVMDEADR 104
                  5899*****************998764214555554.4555.5678889999999999**99998875.5666667777799*****976 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 8.4e-05
    TIGR04095 296 eeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRksp.Gkeraeiy 393
                  +++r++d ++k+l ee g+ v      +s+++R++ lk+f +ge  +++a      G+D+  + + +   s  +   ++ R GR  R  + Gk+  + y
  MMETSP1174-20130828|12330_1 214 NTKRRVDYLTKMLWEE-GIGVCGVHGDKSQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRIGRTGRAGKsGKS-VTFY 310
                  4677888888888654.7777777888999*******************************************************998651555.3333 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.073        30      83     129 ..      17      63 ..       9     102 .. 0.88
   2 !   12.4   0.0   1.7e-05    0.0071     314     377 ..     241     304 ..     203     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.073
    TIGR03817  83 talylaPtkalaadqlravkeleerdvraatydGdtpaeerewirek 129
                  + l laPt+ la      ++++    v  ++y G   +++ + ir +
  MMETSP1174-20130828|12330_1  17 SCLVLAPTRELALQIHGECTKFGAGCVAICVYGGAPRTAQIDAIRRS 63 
                  6799*********999******************9999999988864 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.7e-05
    TIGR03817 314 laedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                   ++dr +  +++ +Ge   + at+    G+di G+  vv    P  v ++  ++Gr+Gr+g+  
  MMETSP1174-20130828|12330_1 241 SQDDRNRALKKFVAGETPVMIATDVASRGLDIKGVTHVVNFDSPRDVETYVHRIGRTGRAGKSG 304
                  56788888889999**********************************************9865 PP

>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.8e-05      0.04     408     496 ..     189     280 ..     172     315 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.8e-05
    TIGR03714 408 ekleatleevk.elhekgqPvLlitgsvelselysklLlkegiphnvLnaqnva...keaqiiaeaGqkgavtvatslaGrGtDikLgkgvke 496
                  ek ea  + +  +  + +  vL+++ + +  ++  k+L +egi    +  +      + a     aG ++ v +at +a rG Dik    v +
  MMETSP1174-20130828|12330_1 189 EKDEALFKLLTtDSVDDNDKVLVFANTKRRVDYLTKMLWEEGIGVCGVHGDKSQddrNRALKKFVAG-ETPVMIATDVASRGLDIKGVTHVVN 280
                  66666666554145667788***********************877665543331103333333466.56899************95555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.91
# Mc/sec: 510.55
//
Query:       MMETSP1174-20130828|12334_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|12337_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|12333_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-54  180.2   0.7    1.1e-53  179.8   0.5    1.2  1  TIGR02881 spore_V_K: stage V sporulation protein K
    3.9e-50  168.5   0.1    5.7e-50  168.0   0.1    1.2  1  TIGR02880 cbbX_cfxQ: CbbX protein
    7.3e-47  158.0   1.3    9.6e-47  157.6   0.9    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.4e-05   22.1   0.1      7e-05   19.8   0.0    2.0  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.6e-05   21.2   0.3    1.8e-05   20.9   0.2    1.2  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0008   15.6   0.1     0.0011   15.2   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0011   15.7   0.2       0.41    7.3   0.0    3.1  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0011   16.0   0.1     0.0015   15.5   0.1    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
     0.0065   13.0   0.0     0.0099   12.4   0.0    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
     0.0085   12.5   0.3       0.47    6.8   0.0    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.5   2.7e-56   1.1e-53       2     234 ..     128     361 ..     127     386 .. 0.90

  Alignments for each domain:
  == domain 1    score: 179.8 bits;  conditional E-value: 2.7e-56
    TIGR02881   2 ekeleklvGleevkelikeiyalilinekrkeeglkaek.qvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslar.GGekdfGkeaidtlvkemedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereykltee.akaklreklakvksasekefsnarlvrnlieka 234
                  e+el++lvG e vk+ + +     +++++r+e   +  +    hm f GnPGtGkt +a l+a+++ +l++++kG+l++v+radlv   iG+ta kt+++i++a+GGvlfideay l +    kdfG+eaid ++ +m+    ++v+i+aGy++em+ f+  nPGl  r++ ++ f+dy+++el +i+k  v+   ++l +e ++ +l +++ +++ a+++ + n+ + + +  ka
  MMETSP1174-20130828|12333_1 128 EQELSHLVGQESVKKFLLQWEKGLKLDRRREEVFNRIVRvDPPHMCFLGNPGTGKTKIAVLVASVLAQLGLVAKGELVQVQRADLVAGAIGQTAIKTKAKIEEAKGGVLFIDEAYRLFQeESTKDFGREAIDEIMAAMN--TGDVVMIFAGYRKEMQAFMGGNPGLFRRISKQFFFEDYKTDELTNILKLNVKLSGFQLDTEvTDEQLTDIIERKTIARQRAQMNGGIPQQMFRKA 361
                  79************************99999876665441568*************************************************************************9762578*************995..689*******************************************************7662678899999999999999999998777776665 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.0   0.1   1.4e-52   5.7e-50      19     278 ..     129     386 ..     116     390 .. 0.83

  Alignments for each domain:
  == domain 1    score: 168.0 bits;  conditional E-value: 1.4e-52
    TIGR02880  19 eldreliglkpvktrireiaalllverlrqkl..glasaapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrpdnerdygqeaieillqvmenqrddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeae.ealaeyialrrkqpffanarsirn.aldrarlrqanrllaa.adkvldksdlvtieaedl 278
                  +   +l+g + vk+ + +    l ++r r+++   +    p  hm+f gnpgtgkt +a+ +a++l +lg v kg+lv v r dlv   ig ta ktk  +  a+ggvlfideay l++ +  +d+g+eai+ ++  m+    d+v+i+agy++ m+ f+  npgl  r+++   f dy+++el +i +l ++   ++l++e   e l++ i+++     +a  r+  n  + +  +r+a+ +l++ +d    +++l+t +  dl
  MMETSP1174-20130828|12333_1 129 QELSHLVGQESVKKFLLQWEKGLKLDRRREEVfnRIVRVDP-PHMCFLGNPGTGKTKIAVLVASVLAQLGLVAKGELVQVQRADLVAGAIGQTAIKTKAKIEEAKGGVLFIDEAYRLFQEESTKDFGREAIDEIMAAMN--TGDVVMIFAGYRKEMQAFMGGNPGLFRRISKQFFFEDYKTDELTNILKLNVKLSGFQLDTEVTdEQLTDIIERKT----IARQRAQMNgGIPQQMFRKAKWFLDErLDMDACEDELMTFNLGDL 386
                  333468999*********99999999999875223444444.6*****************************************************************************************9999995..58********************************************************99865155666555443....445554433257777777777766541455555666777766666 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.9   2.3e-49   9.6e-47     269     555 ..     125     393 ..      83     395 .. 0.88

  Alignments for each domain:
  == domain 1    score: 157.6 bits;  conditional E-value: 2.3e-49
    TIGR03922 269 aEaeaeLakqiGlervkeqvaalkssvevalvRaer.GlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestpdanGverrglDiagngrfvRnvvEraeeeRdfRldasdrldevtvddlkeiteddvaravksl 555
                   + e+eL +++G e vk+ + + ++ ++++++R+e     v +   H+ ++G PGtGkt iA  va ++a lg+++k e++ v+Radl++  ig+++ kt++ i++a ggvlF+DEay L ++  +++ dfG eaid ++a+++    ++v+i AGY+k++ +++  n+GL +R +++  Fe Y +dEl +i k   +     ld + ++   e  t + +++t       r+   +  ng+   ++  +a+ + d Rld +       +d+l++++  d++ +++++
  MMETSP1174-20130828|12333_1 125 FDLEQELSHLVGQESVKKFLLQWEKGLKLDRRREEVfNRIVRVDPPHMCFLGNPGTGKTKIAVLVASVLAQLGLVAKGELVQVQRADLVAGAIGQTAIKTKAKIEEAKGGVLFIDEAYRLFQE--ESTKDFGREAIDEIMAAMNT--GDVVMIFAGYRKEMQAFMGGNPGLFRRISKQFFFEDYKTDELTNILKLNVKLSGFQLDTEVTD---EQLTDIIERKTIA-----RQ--RAQMNGGIPQQMFRKAKWFLDERLDMDA-----CEDELMTFNLGDLENSLEEM 393
                  46689****************************997245689999*****************************************************************************9..88999*************76..689*******************************************99999888888887776...4567777777752.....22..2456999999999999999999998887.....78889999999999888776 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.7e-07     7e-05      30      95 ..     169     246 ..     129     266 .. 0.66
   2 ?   -0.6   0.0      0.28   1.1e+02     156     190 ..     301     339 ..     289     376 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.7e-07
    TIGR00635  30 ldhvllyGPPGlGkttlakiiakelgvklkitsgpale.kpgDlaa.il..tale........egdvlfiDeihrlsk 95 
                    h+ + G PG Gkt +a ++a+ l +   +++g  ++ +  Dl+a ++  ta++        +g vlfiDe +rl +
  MMETSP1174-20130828|12333_1 169 PPHMCFLGNPGTGKTKIAVLVASVLAQLGLVAKGELVQvQRADLVAgAIgqTAIKtkakieeaKGGVLFIDEAYRLFQ 246
                  3599*******************9988777888876652345765424422223211112233578*******99965 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.28
    TIGR00635 156 lefYseeeleeivkrs....aklleleieeeaaleiarr 190
                  +e Y+++el++i+k +    + +l+ e+++e+ + i +r
  MMETSP1174-20130828|12333_1 301 FEDYKTDELTNILKLNvklsGFQLDTEVTDEQLTDIIER 339
                  566999999999765511115567777777777776554 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   4.5e-08   1.8e-05     209     358 ..     172     314 ..       9     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.5e-08
    TIGR02639 209 PllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsldasnlLkPalasGkirciGsttyeeykkifekdkaLsrrfqkidv.eePskeetvkilk 358
                    ++G+pG Gkt i+  +a  +a+      + + ++ +++ ++l+aG+   G+   + k   ++ie+ +  +lfiDe + +    +t +   +a + +  a++ G++ +i +   +e + ++  + +L rr  k    e+  ++e ++ilk
  MMETSP1174-20130828|12333_1 172 MCFLGNPGTGKTKIAVLVASVLAQLG---LVAKGELVQVQRADLVAGAI--GQTAIKTK---AKIEEAKGGVLFIDEAYRLFQEESTKDFGREAIDEIMAAMNTGDVVMIFAGYRKEMQAFMGGNPGLFRRISKQFFfEDYKTDELTNILK 314
                  3689************9999998865...467889999*********96..55444444...4689999**************************************************************98855414455666667765 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-06    0.0011     195     339 ..     152     294 ..     132     359 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.6e-06
    TIGR01243 195 elplkhpelfeklg.ieppkgvllygppgtgktllakavaneagayfiaingpeimsk....yygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdr 339
                  +l  +  e+f+++  ++pp+ + ++g pgtgkt +a  va   +   ++  g  +  +      g   +   +   + ee    ++fide       +ee t +  +  + ++++ m+     g v++i a  r +        pg f r
  MMETSP1174-20130828|12333_1 152 KLDRRREEVFNRIVrVDPPH-MCFLGNPGTGKTKIAVLVASVLAQLGLVAKGELVQVQradlVAGAIGQTAIKTKAKIEEAKGGVLFIDEAY--RLFQEESTKDFGREAIDEIMAAMN----TGDVVMIFAGYRKEMQAFMGGNPGLFRR 294
                  56667889999875256665.56679999999988888887665554554444333221111234444444455556666777899999854..446788888888888888888775....5888888888887766666666776655 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.082        34     103     134 ..      42      74 ..      33      89 .. 0.80
   2 !    7.3   0.0   0.00099      0.41      34      65 ..     164     194 ..     155     214 .. 0.75
   3 ?    3.3   0.0     0.016       6.4     193     213 ..     297     317 ..     294     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.082
    TIGR02928 103 eeevpetGlstkev.feelvkeleeredsliiv 134
                  ++ + + G+st++v f+el++++++++d l+ +
  MMETSP1174-20130828|12333_1  42 GRALDKMGISTSRVdFNELINIVDTNGDGLLSI 74 
                  5666789*****************999988754 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00099
    TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvlkele 65 
                  i+r   p+ +   G++GtGKt ++  v   l+
  MMETSP1174-20130828|12333_1 164 IVRV-DPPHMCFLGNPGTGKTKIAVLVASVLA 194
                  4544.56667778********99988876665 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.016
    TIGR02928 193 eeivFppYdaeeLrdILeeRa 213
                  +++ F++Y+++eL +IL+  +
  MMETSP1174-20130828|12333_1 297 KQFFFEDYKTDELTNILKLNV 317
                  6889*************9655 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   3.7e-06    0.0015     138     224 ..     151     241 ..     134     347 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.7e-06
    TIGR01242 138 velplkkpelfee.vGieppkGvllyGppGtGktllakavaee.......tnatfirvvgselvkkyiGeGarlvrevfklakekapsiifidei 224
                  ++l  ++ e+f++ v ++pp   +  G pGtGkt +a  va+        ++  +++v  ++lv   iG+ a   +  ++ ak     ++fide 
  MMETSP1174-20130828|12333_1 151 LKLDRRREEVFNRiVRVDPPHMCF-LGNPGTGKTKIAVLVASVlaqlglvAKGELVQVQRADLVAGAIGQTAIKTKAKIEEAK---GGVLFIDEA 241
                  567778889998835799998665.59*******9988877641111222455677888888888888888766666555444...578999985 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.4e-05    0.0099     204     302 ..     157     245 ..     144     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-05
    TIGR03689 204 hkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslf 302
                  ++e++++     P  + + G PG+Gkt ia  va+ la+       ak+ +++++  +l+   +G+t  + ++         +e +  v+f+de   lf
  MMETSP1174-20130828|12333_1 157 REEVFNRIVRVDPPHMCFLGNPGTGKTKIAVLVASVLAQLGL---VAKGELVQVQRADLVAGAIGQTAIKTKAK-------IEEAKGGVLFIDEAYRLF 245
                  5677766544444456677*******************9764...47888889999999988888886444333.......333334466666666555 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0012      0.47     214     239 ..     172     197 ..     164     216 .. 0.81
   2 ?    3.6   0.0      0.01       4.3     278     321 ..     215     260 ..     208     285 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0012
    TIGR00368 214 llllGPPGsGktllakrlqgllPelt 239
                  + +lG PG+Gkt +a  + ++l +l 
  MMETSP1174-20130828|12333_1 172 MCFLGNPGTGKTKIAVLVASVLAQLG 197
                  679******************99874 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.01
    TIGR00368 278 alvGGGaiPkPGeislahnGvlfldellef..krkvldalrePled 321
                  + +G  ai     i  a+ Gvlf+de+  +  + ++ d+ re +++
  MMETSP1174-20130828|12333_1 215 GAIGQTAIKTKAKIEEAKGGVLFIDEAYRLfqEESTKDFGREAIDE 260
                  567888899999999***********97642355677788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.56
# Mc/sec: 1001.70
//
Query:       MMETSP1174-20130828|12335_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 892.25
//
Query:       MMETSP1174-20130828|12339_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|12340_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   35.8   0.0    0.00061   17.0   0.0    2.0  2  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.5e-07   0.00063      55     168 ..      12     127 ..       6     139 .. 0.90
   2 !   17.0   0.0   1.5e-07   0.00061     183     233 ..     173     226 ..     150     232 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-07
    TIGR00046  55 iskkkvkvklleaeseerelplkvhlaivlikgkklekiirklteLGvskiipllaersvvkldae.akkKlerwqkivieaaeQsgrni.vpeikavknlkeklaeaeeealkln 168
                  +++ +++v+++++  +  +   +v l+++l+ ++++ ++i+ +  +G+  + +  a    + + ++ + +K +r +  +  ++eQsg ++ +p++ +  +lk +la+ eee+   +
  MMETSP1174-20130828|12340_1  12 EDSGSATVHMNKGVLKVSQERPRVDLLLALPAPSRFHRVIPIIGMVGIDRLYLTTASKVDKGYFSShMLQKKDRLNDALSIGLEQSGTSVcMPRVSVHRKLKSLLAQLEEENATTD 127
                  6677889999999999999999***************************************999999********************9963689********99999999887665 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.5e-07
    TIGR00046 183 eakkiviiiGPEGGfsek.EiqllkekgfkevsLgk..riLRteTAvvaalsil 233
                    k+i++++GP GG+  + Ei l+++ gfk+vsL      LRt+ A+ + ++ +
  MMETSP1174-20130828|12340_1 173 SQKRILLAVGPDGGWELPyEIDLFRAHGFKDVSLPScsAPLRTDIAIATLVTRT 226
                  57899**********8644***************75225699999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1018.79
//
Query:       MMETSP1174-20130828|12343_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 690.74
//
Query:       MMETSP1174-20130828|12344_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|12341_1  [L=1059]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   10.6  20.9      0.038   11.7   0.2    5.7  6  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
        0.2    9.9   0.0        0.2    9.9   0.0    4.4  6  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3    0.0019       3.9       6      22 ..      12      27 ..       7      31 .. 0.87
   2 ?   -1.7   0.2      0.32   6.6e+02      14      24 ..     146     155 ..     143     159 .. 0.77
   3 ?   11.7   0.2   1.8e-05     0.038       7      26 ..     165     184 ..     162     186 .. 0.86
   4 ?    3.3   0.0    0.0086        18      14      25 ..     199     209 ..     191     212 .. 0.74
   5 ?    2.0   0.2     0.022        45       7      17 ..     218     228 ..     217     228 .. 0.95
   6 ?   -3.5   0.1       1.3   2.6e+03       7      13 ..     244     250 ..     244     252 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0019
    TIGR01376  6 lFsnNsakgsGGAIyat 22
                 +F+ Nsa  +GG I ++
  MMETSP1174-20130828|12341_1 12 TFNLNSAN-YGGVIKSD 27
                 79******.*****998 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.32
    TIGR01376  14 gsGGAIyatgk 24 
                  g+GG +y++ +
  MMETSP1174-20130828|12341_1 146 GKGGVLYSG-S 155
                  48*****98.4 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 1.8e-05
    TIGR01376   7 FsnNsakgsGGAIyatgkis 26 
                  F +Nsa + GG +yat++ +
  MMETSP1174-20130828|12341_1 165 FVSNSASHAGGVLYATEAST 184
                  89**************6555 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.0086
    TIGR01376  14 gsGGAIyatgki 25 
                   sGGAI++  + 
  MMETSP1174-20130828|12341_1 199 SSGGAIHSV-SS 209
                  69*****97.55 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.022
    TIGR01376   7 FsnNsakgsGG 17 
                  F +Nsa ++GG
  MMETSP1174-20130828|12341_1 218 FHSNSALNYGG 228
                  99********9 PP

  == domain 6    score: -3.5 bits;  conditional E-value: 1.3
    TIGR01376   7 FsnNsak 13 
                  F +Nsa 
  MMETSP1174-20130828|12341_1 244 FRSNSAD 250
                  99***97 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3      0.98     2e+03      23      37 ..     414     428 ..     401     430 .. 0.65
   2 ?   -2.2   1.4      0.58   1.2e+03      22      40 ..     464     482 ..     447     494 .. 0.73
   3 ?    9.9   0.0   9.9e-05       0.2      19      58 ..     555     595 ..     551     602 .. 0.80
   4 ?   -3.6   0.2       1.6   3.2e+03      64      75 ..     725     736 ..     718     745 .. 0.53
   5 ?   -3.2   0.1       1.2   2.5e+03      64      74 ..     779     789 ..     767     801 .. 0.45
   6 ?   -3.4   0.4       1.4   2.8e+03      64      83 ..     881     900 ..     855     906 .. 0.46

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.98
    TIGR04104  23 kkkikCpnCgekqyl 37 
                    +i C  C + +y 
  MMETSP1174-20130828|12341_1 414 AGNINCTACDAGKYT 428
                  457889999887765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.58
    TIGR04104  22 kkkkikCpnCgekqyltak 40 
                      + C+ C e +yl+ +
  MMETSP1174-20130828|12341_1 464 ESGATNCSICDEGYYLDID 482
                  2567789999999998766 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 9.9e-05
    TIGR04104  19 lfskkkkikCpnCgekqyltaksrkk.svllllipllllla 58 
                  +++++  i C++C+++ +l+ ++ ++   +l++++ l +l 
  MMETSP1174-20130828|12341_1 555 YWRQQGAIGCQSCKTTGHLSDTKLQViLGFLFFLVALYVLS 595
                  7999***************9999888666666666655554 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1.6
    TIGR04104  64 lsiililllyii 75 
                  + ++l+l++y++
  MMETSP1174-20130828|12341_1 725 VMFWLLLFVYLV 736
                  333344444333 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 1.2
    TIGR04104  64 lsiililllyi 74 
                  ++ +l++l+y 
  MMETSP1174-20130828|12341_1 779 IYAWLFVLIYP 789
                  23333333333 PP

  == domain 6    score: -3.4 bits;  conditional E-value: 1.4
    TIGR04104  64 lsiililllyiillllivll 83 
                  l+  ++l++ ++ + l+ ll
  MMETSP1174-20130828|12341_1 881 LRPFVVLIFALVSVKLYSLL 900
                  33333444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:00.65
# Mc/sec: 2150.41
//
Query:       MMETSP1174-20130828|12348_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1174-20130828|12347_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-28   94.9   0.0    1.2e-27   94.3   0.0    1.2  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
      8e-12   43.0   0.0    1.8e-11   41.8   0.0    1.6  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    2.5e-06   23.9   0.0    4.4e-06   23.0   0.0    1.3  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   8.4e-31   1.2e-27      39     138 ..      74     175 ..      57     176 .. 0.95

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 8.4e-31
    TIGR00399  39 fekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk.dlallspdkevkaGerv 138
                  f+ +d+rv+k+ +a + e+sdkL+  ++D+Ge++ rq+ sG++++Y   +L +++v+vv+NLkPaKl G  S Gm++ a +dgk ++  ++p +++ +Gerv
  MMETSP1174-20130828|12347_1  74 FHSLDVRVGKIVEAWEHEDSDKLFCERIDVGEDEpRQIASGLQAHYALGDLTDRMVLVVCNLKPAKLAGFPSAGMVFCASEDGKgKVEFIDPPAGAVPGERV 175
                  899*****************************999******************************************99999888***************98 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.3e-14   1.8e-11       4     106 ..      74     175 ..      72     176 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 1.3e-14
    TIGR02222   4 fekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvlGv.ideegevvllqpdrevklGtkv 106
                  f+ +d+rvG+ivea +++++ k  +  ++d+G e   ++ ++ + ++y   +l +r v++v+n+ p ++ag+ s  +v  + +d +g+v ++ p      G++v
  MMETSP1174-20130828|12347_1  74 FHSLDVRVGKIVEAWEHEDSDKL-FCERIDVG-EDEPRQIASGLQAHYALGDLTDRMVLVVCNLKPAKLAGFPSAGMVFCAsEDGKGKVEFIDPPAGAVPGERV 175
                  899****************9985.6779****.55778888899999****************************99987625789*****9998888888877 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.2e-09   4.4e-06      43     124 ..      77     154 ..      65     156 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.2e-09
    TIGR00472  43 lkgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveag.kkVvvAlegAkLpnglkIkksklrGveSeGMl.CSle 124
                  l+ v vGk++e  +h+++dkL   ++d+ge+e++qi +g + + a  +     l +  +     +k++kl G +S GM+ C++e
  MMETSP1174-20130828|12347_1  77 LD-VRVGKIVEAWEHEDSDKLFCERIDVGEDEPRQIASGLQAHYALgD-----LTDRMVLVVCNLKPAKLAGFPSAGMVfCASE 154
                  44.99**********************************887655323.....3444444458899999999999999526554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 931.69
//
Query:       MMETSP1174-20130828|12353_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 275.62
//
Query:       MMETSP1174-20130828|12352_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1235.28
//
Query:       MMETSP1174-20130828|12356_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|12355_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.69
# Mc/sec: 508.83
//
Query:       MMETSP1174-20130828|12360_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|12362_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    3.5  24.2        2.6    3.4  16.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        6.7    5.0  13.4         10    4.4   9.3    1.3  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  16.8    0.0013       2.6     963     997 ..      59      93 ..      27      98 .. 0.43

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0013
    TIGR00927 963 kGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeee 997
                   G++g  + d  ++ ++eeeeeeeeeeeee ++ee
  MMETSP1174-20130828|12362_1  59 IGAEGRTEDDDDETRDDEEEEEEEEEEEEEVDDEE 93 
                  33333333333333333333333222222222222 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   9.3     0.005        10      62      95 ..      59      93 ..      39      99 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.005
    TIGR03685 62 vaaaaaaaaaaea.aeeekeeeeeeeeekeeeeee 95
                 + a + +  ++++ +++e+eeeeeeeee+e ++ee
  MMETSP1174-20130828|12362_1 59 IGAEGRTEDDDDEtRDDEEEEEEEEEEEEEVDDEE 93
                 33333333322220233333333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1174-20130828|12361_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 208.14
//
Query:       MMETSP1174-20130828|12363_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-17   60.4   0.0    6.5e-17   59.8   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      8e-14   49.6   0.1    1.3e-13   48.9   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.5e-12   43.6   0.5    2.4e-11   41.2   0.3    2.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    7.5e-10   36.5   0.8    1.1e-09   36.0   0.6    1.6  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.1e-08   30.8   0.9    7.4e-08   29.0   0.6    1.7  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.8e-08   31.3   0.1    8.3e-08   29.8   0.1    1.8  1  TIGR02415 23BDH: acetoin reductases
    6.8e-08   29.8   0.0    1.1e-07   29.1   0.0    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    5.1e-07   27.4   0.1    8.3e-07   26.7   0.1    1.5  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.6e-07   27.0   1.0    1.4e-06   25.7   0.7    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.1e-06   26.0   2.0    1.6e-06   25.5   1.4    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.6e-19   6.5e-17       7     238 ..      16     254 ..       9     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1.6e-19
    TIGR01830   7 srgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGit....rDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekls..ekvkkkileqiplk....rlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  +r+i   +ak+ a++ga++ +   ++e+ + +++  +++a  ++++ ++dv+d++++++l ++++++   id ++ +   +      + +l  + +d+ e  +v   ++  ++++v   +      +i ++s + ++   +g      +Ka l + ++ la+El+   ++vn+++PG i+t   + ++  + ++++++e  pl+      + +e v +a++fLasd+as ++Gqv+ +dGG+
  MMETSP1174-20130828|12363_1  16 KRSIAWGVAKAWANAGASIHLV-CQSERFLPNVKRLVADASIDCTVDVCDVTDDAQLRALGHSIQDRSIGIDAVLHSVAFApsaaMRGRFLDTSRSDFAEAHDVSAYSLIALARTVEPFLRP--DSSITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKgfSALSTHVEEVSPLGwsptENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  5889999************999.668899*******************************************998876655111134567889999********999999999998876654..56788888888888889999999***********************************999988435677888888899722224566799**************************6 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0     3e-16   1.3e-13       2     245 ..       2     254 ..       1     256 [. 0.82

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 3e-16
    TIGR01832   2 sleGkvalvtGa..ntGlGqgiavglaeaGadi..vgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGi....irredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGir.vpsyta...sksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPag....rwGepedlagaavflassasdyvnGailavdGGw 245
                   l Gk+ l+ G   ++ +  g+a + a+aGa i  v+ + + l + +  v++     +    d++d ++ +al +++ +++  id ++           r   ++ s +d+ +  +v   ++  l+++v   +l+    + i      +s+ G  r vp y a   +k ++   ++ la e+  + ++vn ++PG ++t  ++ ++  ++ + ++ e  P g    +    e ++ aavflas+a++ ++G+++ +dGG+
  MMETSP1174-20130828|12363_1   2 ALSGKTGLILGVanKRSIAWGVAKAWANAGASIhlVCQSERFLPNVKRLVADASIDCTVDVCDVTDDAQLRALGHSIQDRSIGIDAVLHSVAFapsaAMRGRFLDTSRSDFAEAHDVSAYSLIALARTVE-PFLRPD--SSITT----VSYMGSTRvVPGYNAmgcAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKGFSALSTHVEEVSPLGwsptENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  589******99632579**************9833555666678999999999999999999***********9******999**9887655411116789999**********************9986.566655..34444....46667666258887744479999999*****************************************9999988222123445678899**********************7 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.3   5.9e-14   2.4e-11       5     253 ..       9     255 ..       5     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 5.9e-14
    TIGR01963   5 lvtGaas..GiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapie....efptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwt 253
                  l+ G a    i  ++ak+ a+aGa++ ++  +e  + ++++ +++a+++++  + dvt+ ++++ l + ++++  ++d ++        a++     +    +f++  +v+  s + + r++ p ++ +    i  ++ + + +  +   a   aK +l   ++ lA E   +++++n++ Pg ++t   ++ i+  + +    +e+v     l  +pt++    e v+++a+flasdaa  + Gq ++ldgG+ 
  MMETSP1174-20130828|12363_1   9 LILGVANkrSIAWGVAKAWANAGASIHLVCQSERFLPNVKRLVADASIDCTVDVCDVTDDAQLRALGHSIQDRSIGIDAVLHSVAFAPSAAMRgrflDTSRSDFAEAHDVSAYSLIALARTVEPFLRPDS--SITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTV-ASRGIKGFS-ALSTHVEEVS---PLGWSPTENS-AQEAVGKAAVFLASDAASCMSGQVVVLDGGFX 255
                  55555432269999*********************************************************998888866655555544444322225577899**********************9886..466666666778889999************************************94.344555433.3333444443...4788888775.5689**************************96 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.6   2.6e-12   1.1e-09     146     264 ..     138     254 ..       3     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 2.6e-12
    TIGR03971 146 GsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                   si  vs + + + +pg     +ak  l + ++ la+el++ ++rvn+++P  ++t   +     ++++++ e +   l   p +     e+v +++++lasd +  ++G+ + +d G 
  MMETSP1174-20130828|12363_1 138 SSITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKGFSALSTHVEEVSP-LGWSPTE-NSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  488889999999999***************************************99877744444444444444433.3555655.5589**************************995 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.6   1.8e-10   7.4e-08     415     669 ..       6     253 ..       1     257 [. 0.71

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.8e-10
    TIGR02632 415 rvalvtGgas..GiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskple....eteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaG 669
                  +  l+ G a    i   va+  ++ Ga + l+   +  + +v++ +      d +v +  dvtd+ +++a  + +     G+d+v  +   a s+ +     +t+ ++++  +d+ a     +ar     lr  +  + + +++s   v   ++  a  +aka+    +r la el++  +rvn + P  +     +  +++++k  +a   ++++++      +    +   e + +a  +lasd  +   G+++ +d+G
  MMETSP1174-20130828|12363_1   6 KTGLILGVANkrSIAWGVAKAWANAGASIHLVCQSERFLPNVKRLVA-DASIDCTVDV-CDVTDDAQLRALGHSIQDRSIGIDAVLHSVAFAPSAAMRgrflDTSRSDFAEAHDVSAYSLIALARTVEPFLRPDSSITTVSYMGSTRVV---PGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKT---V--ASRGIKGFSALSTHVEEVSPLGWSPT---ENSAQEAVGKAAVFLASDAASCMSGQVVVLDGG 253
                  5555555543226888899999******9999888888877766555.5566766665.7***********9****99********99999988876511116778999************************9999999999998755...55667789**************************9976532...1..12222222222222222222222221...233345555566666666666666666666666 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1     2e-10   8.3e-08       3     253 ..       8     256 ..       6     257 .. 0.73

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2e-10
    TIGR02415   3 alvtGaa..qGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtp....ileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.GkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlvy 253
                   l+ G a  + i  ++a+  a+ G ++ ++   e+ + ++++ + ++  +  + + dv+d +++ ++ ++ +++  ++d ++     a++ +    +l+ +  ++ + ++v   +    + a a+  + +      i   + + +++ +p   a  ++k ++ + ++  a+eL ++ + vn  +PG +kt   + i+   a     e+ + l           +s  e v +   flas+++  + Gq++++dGG+ y
  MMETSP1174-20130828|12363_1   8 GLILGVAnkRSIAWGVAKAWANAGASIHLVCQSERFLPNVKRLVADASIDCTVDVCDVTDDAQLRALGHSIQDRSIGIDAVLHSVAFAPSAAmrgrFLDTSRSDFAEAHDVSAYS----LIALARTVEPFLRPdSSITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKGFSALSTHVEEVSPLGWS-----PTENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGFXY 256
                  5666655225788899999999999999999999999999999999999999999999999998888777776666666665555555555411115666667777777776544....44555555554444134555555667788999999999*************************************998765554444433333222.....223566789999999********************999 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.7e-10   1.1e-07     163     263 ..     148     255 ..      96     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.7e-10
    TIGR02685 163 tdqpllgfslytmakealeGltrsaalelaslqirvngvapG.l.sllpda.mpeevkeeyrrkv.plgqr...easaeqiadvviflvskkakyitGtiikvdGGls 263
                    + ++g+     ak +le  +r  a el + ++rvn ++pG + ++      +++    +   v plg +   +++ e +  + +fl s+ a  ++G ++ +dGG+ 
  MMETSP1174-20130828|12363_1 148 STRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGpIkTVASRGiKGFSALSTHVEEVsPLGWSpteNSAQEAVGKAAVFLASDAASCMSGQVVVLDGGFX 255
                  3456789***********************************5313333331466766666655559996433255557799************************86 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1     2e-09   8.3e-07     133     240 ..     141     254 ..      19     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2e-09
    TIGR01829 133 inissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavre..dvlkkivaqiPvk....rlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                    +s +   +   G     +aka l   ++ la+e   + v vnv++PG i+t   + ++    + +++ +  P++      ++ e +++a +flas++a+ + G+ + ++GG 
  MMETSP1174-20130828|12363_1 141 TTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKGfsALSTHVEEVSPLGwsptENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  55555666666667778889***********************************9999853144555666567762211345668899***********************96 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.7   3.4e-09   1.4e-06       7     238 ..      16     254 ..      10     255 .. 0.63

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3.4e-09
    TIGR01831   7 srgigraialklaadgfeiavhyrsdradaeesvaairaqg.gnarllkfdvadrvavrevleadiaehgayy.gvvlnagiardaafpa.lseedwdavietnldgfynvihp..lvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaeve..kdlkealklv.pm....krvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                   r i   +a   a +g  i + ++s+r   +  v+ ++a+   ++ +   dv+d  + r+ l + i+++      v+ +   a  aa+   + +       e+   + y +i     v p+  +r    i t++ +       g      aka l  a++ la el   k+ vn ++pg i+t     ++  ++l+  ++ v p+          e v   a fl sd a+ ++ qv+ ++gg+
  MMETSP1174-20130828|12363_1  16 KRSIAWGVAKAWANAGASIHLVCQSERFLPN--VKRLVADAsIDCTVDVCDVTDDAQLRA-LGHSIQDRSIGIdAVLHSVAFAPSAAMRGrFLDTSRSDFAEAHDVSAYSLIALarTVEPF--LRPDSSITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKgfSALSTHVEEVsPLgwspTENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  5667777777777788877777777776543..444555440445555567777777775.456666554433033334444555554331223333333333334455555430034444..566777888888777777788888999********************************98776665335666665544244111112233345777889*******************96 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   1.4     4e-09   1.6e-06      14     248 ..      18     254 ..       3     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4e-09
    TIGR03206  14 giggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaa.vaaaeealgpvdvl..vnnagwdvl.kpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                   i   + + +a+ ga + ++  +     +v   ++++  ++    +d+td a + a   +  ++++g   vl  v  a    + + fl+t ++++     +  +  + +  +v + +  r +  i  ++   +     g       k  l a ++ la el   ++ vnv+ pgp +t     +k+ ++ + ++ e              + +  a +flasd a+ ++gqv+ + gg+
  MMETSP1174-20130828|12363_1  18 SIAWGVAKAWANAGASIHLVCQSERFLPNVKRLVADASIDCTVDVCDVTDDAQLRALgHSIQDRSIGIDAVLhsVAFAPSAAMrGRFLDTSRSDFAEAHDVSAYSLIALARTVEPFL--RPDSSITTVSYMGSTRVVPGYNAMGCAKASLEAAARGLAHELGPSKVRVNVLSPGPIKTVASRGIKGFSALSTHVEEVSPLGWSPTENSAQEAVGKAAVFLASDAASCMSGQVVVLDGGF 254
                  455667778888888888888888888888888888888888888899888887654144555667766666223334444441578999999998888888888888888888865..666777777665554455677777889********************************9988888887766666655444333334445566778999******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 783.69
//
Query:       MMETSP1174-20130828|12358_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1100.85
//
Query:       MMETSP1174-20130828|12364_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-61  204.2   0.0    7.5e-61  203.9   0.0    1.0  1  TIGR00549 mevalon_kin: mevalonate kinase
    6.9e-12   42.8   0.1    1.5e-09   35.1   0.0    2.1  2  TIGR00131 gal_kin: galactokinase
    2.8e-07   27.5   0.1    1.7e-05   21.6   0.0    2.1  2  TIGR00191 thrB: homoserine kinase
    7.2e-06   23.1   0.3     0.0029   14.5   0.0    2.1  2  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   0.0   7.3e-64   7.5e-61       3     276 .]      36     310 ..      35     310 .. 0.91

  Alignments for each domain:
  == domain 1    score: 203.9 bits;  conditional E-value: 7.3e-64
    TIGR00549   3 gKviLfGEHaVVYgepAiaaaiealttvtvieeskei.slieselgrkslakvsqelsklle..syiaavlskleekkeaa.lkveieseipigaGLGSSAavavaliaalaalfgselskeelaklaneaEkivhGkpSgiDtavvtyggvllfekdeg...eekllesldalslviadtgvsrsTkelVakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLkslgvShpkleqlvelarkagalgaKlTGaGgGGcvial 276
                  gK+iLfGEH VVY+ pA++ +++ +t    +++++   ++++s     + a +  +++k+ e  + ia vl+ ++  +e+  l ++  +++++ +G+G+SAa +val++a+    + +l+++++++  +e+Ek  hG+pSgiD++ +t+ggvl+f++  g   +e++  +++ +++v a tg+  sT+++V +Vr ++++ p+ ++++l++  +++++++aa++ +d  +lgel+n+n+ lL++l+vS ++l+ lv++ar aga+gaKl+G G+GG ++al
  MMETSP1174-20130828|12364_1  36 GKLILFGEHFVVYNVPALVGSVSSYTDCDCEFSAEPGlEVVDS-----RPAVPGYKVDKKAEadEAIALVLRHFNIDTEKRgLRLTFGGSLTAVSGIGASAAQVVALARAIGFTEQLNLTEDQVNAAGYEGEKGYHGTPSGIDNTAATFGGVLRFQRTAGppvFEQKVLKEP-IRIVYASTGITASTSKVVGDVRAKKDADPDWFEALLQRYIAIAEKGEAAIDANDLPTLGELLNENHALLQDLTVSCKELDDLVNAARAAGAIGAKLSGTGRGGLMLAL 310
                  8*****************************9966654333333.....333333333333333379999**********99*****************************************************************************99887555566665.**********************************************************************************************************97 PP

>> TIGR00131  gal_kin: galactokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0013       1.3     105     172 ..     106     174 ..      84     182 .. 0.83
   2 !   35.1   0.0   1.4e-12   1.5e-09     288     361 ..     251     323 ..     239     328 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0013
    TIGR00131 105 nsvpl.GldivisgdvPtgaGLsssaalevavaavlknlgkleldskeillriqkveehfvGvncGgmD 172
                   ++++ Gl + + g +   +G+ +saa  va+a  +    +l+l++ +    + + e+ + G  +G+ +
  MMETSP1174-20130828|12364_1 106 IDTEKrGLRLTFGGSLTAVSGIGASAAQVVALARAIGFTEQLNLTEDQVNAAGYEGEKGYHGTPSGIDN 174
                  455556***************************999988889999999999999999999999888644 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 1.4e-12
    TIGR00131 288 llkdedlkelGkLmnesqasldddyeitvpeidelvesialvnGsiGsRltGaGfGGCtvalvp.nenvekvrka 361
                  +++ +dl +lG+L+ne +a l+d   +++ e+d+lv  +a + G iG++l G+G GG ++al p  e  e+v +a
  MMETSP1174-20130828|12364_1 251 AIDANDLPTLGELLNENHALLQD-LTVSCKELDDLVN-AARAAGAIGAKLSGTGRGGLMLALTPtVELQETVAEA 323
                  567899************98876.58*******6665.66788*********************64444555554 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-08   1.7e-05      66     175 ..      96     213 ..      84     223 .. 0.80
   2 !    3.8   0.0    0.0044       4.5     237     272 ..     281     319 ..     275     331 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.7e-08
    TIGR00191  66 vakkvlkklgkr..vkpvkltvekeiplgrGLGSSaaaivaaviaanelaglklskeelldlalllEg.......HpDNvapallGGlqlavkedd.....llevlkvPsgsklkvvlviPnie 175
                  +++ vl++++++    +++lt    + + +G+G Saa +va + a+    +l+l++ ++ +   + E+         DN ++a +GG+   +++       +++vlk+P    + +v +  +i 
  MMETSP1174-20130828|12364_1  96 AIALVLRHFNIDteKRGLRLTFGGSLTAVSGIGASAAQVVALARAIGFTEQLNLTEDQVNAAGYEGEKgyhgtpsGIDN-TAATFGGVL-RFQRTAgppvfEQKVLKEP----IRIVYASTGIT 213
                  6677888888887678**************************************9998877777778899887777899.567899975.4555544788888888888....45555555555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0044
    TIGR00191 237 lteikqaakekgalgitlSGaGpt..ilalaeeek.eek 272
                  l+++ +aa+++ga+g  lSG+G    +lal+   + +e 
  MMETSP1174-20130828|12364_1 281 LDDLVNAARAAGAIGAKLSGTGRGglMLALTPTVElQET 319
                  66777899************9865226666665554444 PP

>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00065      0.66     118     179 ..     126     187 ..     117     201 .. 0.92
   2 !   14.5   0.0   2.8e-06    0.0029     216     327 ..     203     309 ..     192     331 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00065
    TIGR01220 118 GlGssgavtvatvkalnafydlelsneeifklavlatlelqskgscGdiaasvygGWiayst 179
                  G+G+s+a +va  +a+    +l+l ++++       +   ++  s+ d +a+++gG + ++ 
  MMETSP1174-20130828|12364_1 126 GIGASAAQVVALARAIGFTEQLNLTEDQVNAAGYEGEKGYHGTPSGIDNTAATFGGVLRFQR 187
                  99****************************99999**********************99985 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.8e-06
    TIGR01220 216 lelliGWtGsPastadlvsevkrrkeeksaayerfleksrdcveslitaletgdiksvqkeirknrqllarlddevgvdieteklkalcdlaeaygg.aakssGaGGGdcGia 327
                  +++    tG  ast+++v +v+ +k  +   +e +l++     e+   a++++d  ++ + +++n  ll++l      ++  ++l  l ++a a g+  ak sG+G G   +a
  MMETSP1174-20130828|12364_1 203 IRIVYASTGITASTSKVVGDVRAKKDADPDWFEALLQRYIAIAEKGEAAIDANDLPTLGELLNENHALLQDL------TVSCKELDDLVNAARAAGAiGAKLSGTGRGGLMLA 309
                  6777788******************9999***************************************9986......4678999999999999998459*****98866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 907.76
//
Query:       MMETSP1174-20130828|12367_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|12365_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.59
# Mc/sec: 724.82
//
Query:       MMETSP1174-20130828|12369_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 270.58
//
Query:       MMETSP1174-20130828|12368_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   21.7  13.2    3.9e-05   21.1   9.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
       0.46    7.4   9.1        2.4    5.1   3.9    2.1  2  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   9.1   1.9e-08   3.9e-05      22     295 ..     105     375 ..      83     381 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.9e-08
    TIGR00817  22 kkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva.......las..ltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalis..ililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvk 295
                   ++ +  h  +++tl++++  +  ++l+w  +  +  + s+  +  l+ +a++++  +  sn s+           k+   i +++   +f g+ + +t yl ++ +v+G a        as      +  l+++   + + i+++++ +fsK        +++ ++++    i+ l+ ++ ++ ++egl ++  + ++    v  l++   +++aa+g+  +     + l +r  +lt +   + ++   I vS  +f ++i+    +G ++ i+G+ l s+ k
  MMETSP1174-20130828|12368_1 105 IHIFERRH-GLFVTLIQFFGYTFFAFLQWVFR--ENNVRSSVPVVYLVILAVLQASMQGLSNLSMRYLTYPAKVLFKSSRVIPTMIFGVIFYGKRYSITEYLIIVIMVFGLAtflgadaNASpeFHPIGVGLISLSLIVDAAIINLQEHLFSKFNCD---EEEMIFMSYAGgsIVLLITCIGMGEVMEGLSFVR-QHQDP---VRILTIL--TVFAACGFCGVSSV--TALTKRFGALTAALTTTARKALTILVSFFLFPKPINGGHIFGSGIFILGLVLKSRSK 375
                  44554444.47899**************9765..4555555555666669999999999********************999999999************************997765433311223344444444455567899999999997776...6788888887655999*****************9.45555...7777777..56788877665543..45779**********************************************998876 PP

>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.9    0.0012       2.4       9     106 ..     121     217 ..     112     223 .. 0.73
   2 ?    3.7   0.0    0.0031       6.4      15     101 ..     283     366 ..     240     395 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0012
    TIGR03025   9 lalllallllslkllleeeesslllllllllllilfalaglyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllallllll 106
                  ++ + ++++l++ +  ++ +ss  ++ l++l+++ ++++gl +    r l+   + ++++  ++ ++++ ++f  k  s+++++++++++++l+++l 
  MMETSP1174-20130828|12368_1 121 FFGYTFFAFLQWVFRENNVRSSVPVVYLVILAVLQASMQGLSN-LSMRYLTYPAKVLFKSSRVIPTMIFGVIFYGKRYSITEYLIIVIMVFGLATFLG 217
                  3333336777788888888888888888888888888889998.455555555566777777777777888888889999999999999999998875 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0031
    TIGR03025  15 llllslkllleeeesslllllllllllilfalaglyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllal 101
                   ++++l+++ +  ++  + +l++l+++++  ++g+ + +   ++   l  +l++++  +l++l+ +fl++   ++ + ++ + ++ l
  MMETSP1174-20130828|12368_1 283 EVMEGLSFVRQ--HQDPVRILTILTVFAACGFCGVSSVTALTKRFGALTAALTTTARKALTILVSFFLFP-KPINGGHIFGSGIFIL 366
                  22233322222..222233333333344444445555555666666666666666666666666666665.3333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1124.55
//
Query:       MMETSP1174-20130828|12376_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 242.98
//
Query:       MMETSP1174-20130828|12377_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|12375_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-11   39.4   0.0      2e-10   38.0   0.0    1.5  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.9e-14     2e-10      29     304 ..      27     289 ..       7     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 4.9e-14
    TIGR01293  29 sdeqaedllklayesginlfdiaevyaagkaetelgkilkkkgwrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlanradpsspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddk.lpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklg.ctlaqlaiawslrsegvssvllgassaeqlmeslgslqvl 304
                   de+   ++ +a+ +g  +fd+aevy  g++e  lgk            v  +  f +    ++rg     ++ + + s+erl  + vd+  ++ ++  +        +    ++gl    g s + ++ +  a   a     ip  ++q +  l  r  +e  l    + +gv +v++splal+l ++ky  + lp++ +a l            +eg      l+ ++++++  g   l+q+a+ w + +    + + ga + +ql ++lg+l+  
  MMETSP1174-20130828|12375_1  27 EDEELARVFSIAVAKGAGFFDTAEVYGLGRSESLLGKFTAALPTDAQGQVSVATKFAALPWRTKRG----DVVAAAERSVERLG-RPVDLYQIHFPNAFANA-AYWDGLGDAFEKGLVRAVGVSNYGSAAVR-ACHAALAARGIPLSTNQVQLSLVYRCPLENGLKATCDELGVKVVAYSPLALGLLSGKYSADrLPSGPRAQL------ARDLFGKEGGGGEGLLEAMRTVSHAHGdVPLTQVALNWVIAKGC--TPIPGARTVDQLTQNLGTLDWT 289
                  577888999*****************************9998877776665555566656667776....7999*********8.679**999999988887.78899******************999875.5566777788999999******************************************8655*****9994......44455567777788899999999999845689******998754..3468*************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|12379_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1174-20130828|12383_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-60  201.9   0.0    3.6e-60  201.6   0.0    1.0  1  TIGR01213 TIGR01213: TIGR01213 family protein


Domain annotation for each model (and alignments):
>> TIGR01213  TIGR01213: TIGR01213 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.6   0.0   8.8e-64   3.6e-60     158     385 ..      60     294 ..      54     296 .. 0.90

  Alignments for each domain:
  == domain 1    score: 201.6 bits;  conditional E-value: 8.8e-64
    TIGR01213 158 lfvkgrYrklvRgipqtrwpcrk..ryeesveeliakpvleatkGteaklhgaGReDvDvrmLGtGRpfvlevkeP.rkRki.d...leeleeeinkradGkveveelkfatreeveevkeekar..kvYrAlvevddkvsdedleelvkeLegatikqrtPkRvlhrRadlvReRrvyevdlskvddnhleliieaegGlYikeLvsgDdGRtrPslsevlgkeavvkeLDvlkve 385
                   ++ grYrkl+R++pqt w      +  +svee  a+ v ++++G ++k+h++GReD+DvrmLG+GRpfv+ +++  r  ki d   +  le  in+ a   veve+l++  +++ ee++++ +   kvY  +v +++ +++ dl++  ++L+   + q tP Rv hrR+ lvR + + ++ +   +++ + l++ea +G Yike v gD GRtrPs++e+lg  a + +LDv++v+
  MMETSP1174-20130828|12383_1  60 FYLGGRYRKLMRDMPQTPWFIDGqrKGSSSVEEALAESVSDLFGG-QIKFHASGREDIDVRMLGNGRPFVIQIQNAlRLGKImDqryISDLEGVINA-ARRGVEVENLELVPKKTFEELQTHAEEksKVYGCMVWSSKAMTALDLKSRLDSLTCLAVSQDTPIRVIHRRSPLVRPKVIKSMRTTWFNAHWFSLVVEASAGCYIKEFVHGDIGRTRPSVAELLGCRADILQLDVMDVK 294
                  5889***************987643467899**************.9***************************97344444141124567889999.66669**********99999987554445***********************************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1045.76
//
Query:       MMETSP1174-20130828|12384_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 711.80
//
Query:       MMETSP1174-20130828|12385_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.74
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|12389_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.54
# Mc/sec: 559.73
//
Query:       MMETSP1174-20130828|12391_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.90
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|12387_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1317.02
//
Query:       MMETSP1174-20130828|12394_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 986.44
//
Query:       MMETSP1174-20130828|12393_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1567.71
//
Query:       MMETSP1174-20130828|12386_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-11   40.9   2.5    4.8e-07   27.9   0.2    2.4  2  TIGR00264 TIGR00264: alpha-NAC homolog


Domain annotation for each model (and alignments):
>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1     5e-06     0.021       8      75 ..      56     121 ..      50     134 .. 0.73
   2 !   27.9   0.2   1.2e-10   4.8e-07      68     114 ..     152     198 ..     128     200 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5e-06
    TIGR00264   8 PkqlkkmqkmmkqlGlemedldveeviiklddeelifknPkvsvleilGvktyqitGkakkekveeee 75 
                   +  kk +k+m++lG++     ++  + k ++  +++  P+v  ++    +ty i G+ak e + ++ 
  MMETSP1174-20130828|12386_1  56 NRSEKKSRKAMQKLGMKSVPDIIRVTVKKSKNILFVISRPDV--FKSPSSDTYIIFGEAKIEDLSAQA 121
                  566899**********87654455444455555566777765..667889*********988877654 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 1.2e-10
    TIGR00264  68 kekveeeeeiseddielvmkqanvskeearraleeagGdlaeailkl 114
                  +++v +e+ +  +dielvm qa   + +a +al+  +Gd+ +ai+ l
  MMETSP1174-20130828|12386_1 152 DDEVVDETGVDSKDIELVMTQAFCTRAKAVQALKSNDGDIVNAIMEL 198
                  456667889999*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1174-20130828|12396_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-16   56.3   0.0    5.2e-16   55.8   0.0    1.3  1  TIGR00930 2a30: K-Cl cotransporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.3e-19   5.2e-16     741     936 .]      40     255 ..       5     255 .. 0.71

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.3e-19
    TIGR00930 741 qgkgtiDvwWlvd...DGGlllLlpylltqkkkwkkCklrifvvaekddeseeekkdlakllsklRleaevivvlmdisakekke.sveafeemlkklrlekeekerea..kdr.........klkeekpkkitdkelqsnkkklyrqv.......rLnevlveksrdAklvllslPvprknsesdelymeflevlsedlprvllvRGnhkevltlys 936
                     g+iD+wW++d     GlllLl+yll+++++w++ k+r+fvv+  +++  e ++ l k++s   ++++v v+  d ++ ++   +++++    +kl   +  +e ++  k +         ++ +   ++i+d  l+ + +++  ++       +L  +  + s++  lv+ slP  + ++ ++  +   +e l+  l rv++v   + e + +ys
  MMETSP1174-20130828|12396_1  40 KLTGSIDIWWVFDlfpANGLLLLLAYLLQRHQVWQSTKVRLFVVTSPETDPGELRELLVKMISAGGMKINVKVLRLDFKDAPRFSvNIQERTGSGQKLPPVS-FQEMDIlgKSQsfnedsdhdEIFTFPSVSIDDPTLNPVSSEIIETIpidsegsKLTALFERFSEASSLVITSLPKKKPEQLPSDWF-RSVENLTSSLRRVIFVMESGVEKIQFYS 255
                  4569******98755579*********************************************999998888888877777554313333333333222211.111111111111111222223333334444444444444443333322333339*********************99999998866.669***************9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1174-20130828|12397_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-10   37.5   0.2    4.1e-10   37.4   0.1    1.0  1  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
    1.6e-07   28.3   0.1    1.6e-07   28.3   0.1    1.1  1  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
    2.7e-05   21.7   0.5    3.3e-05   21.4   0.4    1.1  1  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1     3e-13   4.1e-10     187     247 ..       4      69 ..       2      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 3e-13
    TIGR02067 187 alvAsGrvdl....vveaelspyDiaalipiieeAggvitdwkGkeae.eggeavaaanaalhdev 247
                  + vA Grvd     v+ ++ s +D aa  ++i+eAggv+t+++G++++ ++ +++a+a+++l +++
  MMETSP1174-20130828|12397_1   4 CWVACGRVDAvyagVAGEGWSCWDHAAGSLLITEAGGVVTQLDGSQFQvDDKTILACATNELRSRI 69 
                  789******9777788999*****************************888889999999988765 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.2e-10   1.6e-07     295     339 ..      25      62 ..       3      76 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.2e-10
    TIGR01330 295 iWDhaaGaviveeaGGvvtDaagkpLDfskGrtLeldkGviaasg 339
                   WDhaaG+++++eaGGvvt   g ++          dk ++a+  
  MMETSP1174-20130828|12397_1  25 CWDHAAGSLLITEAGGVVTQLDGSQFQVD-------DKTILACAT 62 
                  6******************8777654433.......344555554 PP

>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.4   2.4e-08   3.3e-05     188     236 ..       3      54 ..       2      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.4e-08
    TIGR01331 188 iclvAegsad.iYpRlgpt..seWDtaAgeavlkeaGgeildldgkplaynk 236
                  +c vA g +d +Y  ++    s WD aAg  +++eaGg +++ldg++++   
  MMETSP1174-20130828|12397_1   3 LCWVACGRVDaVYAGVAGEgwSCWDHAAGSLLITEAGGVVTQLDGSQFQVDD 54 
                  69999999986788776542268***********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 298.92
//
Query:       MMETSP1174-20130828|12400_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|12403_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   17.8   0.0    0.00044   17.2   0.0    1.3  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
     0.0038   13.7   0.0      0.049   10.0   0.0    1.9  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.014   11.6   0.0    1.1  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit
      0.026   11.3   0.0       0.04   10.7   0.0    1.2  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      0.049    9.8   0.0      0.064    9.4   0.0    1.1  1  TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit


Domain annotation for each model (and alignments):
>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.4e-07   0.00044     229     281 ..      32      90 ..       9     111 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 5.4e-07
    TIGR02966 229 eLrsalsNLveNAikytpegge......itvrweeeeegaelsvkDtGeGIaaehlprl 281
                  +L+ ++  +++NA++ t e+++      i+v + + +++++++v+D+G GI+ e+ +r+
  MMETSP1174-20130828|12403_1  32 HLHYVMVEIIKNALRATVEHHKgdemppIKVVVARGAHDVTIKVSDQGGGIPFEETQRM 90 
                  789999999****999977654444556***************************9997 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0     6e-05     0.049     578     625 ..      31      84 ..      10      99 .. 0.79
   2 ?    1.8   0.0     0.018        15     642     676 ..     135     169 ..     130     172 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 6e-05
    TIGR02916 578 erlervlghLvqNAleATee..eG....kVkirverekeaavieieDsGqGmse 625
                   +l+ v++++++NAl AT e  +G    ++k+ v r  + ++i+++D+G G++ 
  MMETSP1174-20130828|12403_1  31 MHLHYVMVEIIKNALRATVEhhKGdempPIKVVVARGAHDVTIKVSDQGGGIPF 84 
                  57889*************752245333359999**999*************975 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.018
    TIGR02916 642 aGmGiGvyesreyveelGGeieveStpgkGtiftl 676
                  aG G G+  sr y + +GG ++v S++  Gt   +
  MMETSP1174-20130828|12403_1 135 AGYGCGLPLSRLYAKYFGGGLQVISMEDFGTDAYV 169
                  799*************************9997666 PP

>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.7e-05     0.014      29      82 ..      33      88 ..      26      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.7e-05
    TIGR01052 29 lttvikelvtnsldacee..aG.ilPdikveieklgkdhykvavednGpGiPeeyip 82
                 l  v+ e+++n+l a+ e  +G  +P ikv + + g++  +++v d G GiP e   
  MMETSP1174-20130828|12403_1 33 LHYVMVEIIKNALRATVEhhKGdEMPPIKVVVAR-GAHDVTIKVSDQGGGIPFEETQ 88
                 678999*********9762245369*****9998.66689************98765 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.9e-05      0.04     360     406 ..      39      91 ..      30      98 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.9e-05
    TIGR01386 360 NLlsNAlrytpegst......ievrverradevevsventgkgipeeelsrlF 406
                   +++NAlr t e         i+v v+r a  v+++v+++g gip ee +r++
  MMETSP1174-20130828|12403_1  39 EIIKNALRATVEHHKgdemppIKVVVARGAHDVTIKVSDQGGGIPFEETQRMW 91 
                  5667777766554322223669*************************999975 PP

>> TIGR01058  parE_Gpos: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   7.9e-05     0.064      34      82 ..      32      87 ..      25      98 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.9e-05
    TIGR01058 34 Glhhlvweivdnsvdevlagy.adn...ievtld...kdnsisvqddGrGipveih 82
                  lh+++ ei++n++   +  + +d+   i+v++    +d +i v+d+G Gip e  
  MMETSP1174-20130828|12403_1 32 HLHYVMVEIIKNALRATVEHHkGDEmppIKVVVArgaHDVTIKVSDQGGGIPFEET 87
                 59***********998887652444444888886222689************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 816.68
//
Query:       MMETSP1174-20130828|12404_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|12406_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.68
# Mc/sec: 128.11
//
Query:       MMETSP1174-20130828|12410_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|12415_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 496.90
//
Query:       MMETSP1174-20130828|12419_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|12413_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   35.1   0.0    3.2e-09   34.1   0.0    1.4  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.6e-07   27.5   0.0    7.5e-07   26.8   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00012   19.2   1.2    0.00051   17.1   0.0    1.8  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00032   17.1   0.0    0.00049   16.5   0.0    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0015   15.2   0.0     0.0021   14.7   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0037   13.9   0.0     0.0056   13.3   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0047   13.8   0.0      0.052   10.3   0.0    1.8  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   5.4e-12   3.2e-09     224     294 ..      59     129 ..      35     150 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 5.4e-12
    TIGR01622 224 vGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                  + nl f+ tE +Lr   e +G i  v++++   + +  Gy  i+Fs + ea eA  ++ G++  GRe++  
  MMETSP1174-20130828|12413_1  59 IRNLPFDTTESDLRSFCENYGTISRVEMPRMLTSDQFAGYAMITFSSTAEAEEAAAQITGVNFHGRELRAF 129
                  55788***************************************************************964 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   7.5e-07     250     341 ..      36     127 ..      13     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.3e-09
    TIGR01661 250 dgavaglaagaqiaasdgagycifvynlspdtdeavlqlfg.pfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlq 341
                  d++++ +aa+++i   +    c  + nl  dt e+ l+ f  ++G++  v + r lt+++  Gy++++ +   ea  a + + G ++ +r l+
  MMETSP1174-20130828|12413_1  36 DTTSSDIAAKKKIER-ENKLLCATIRNLPFDTTESDLRSFCeNYGTISRVEMPRMLTSDQFAGYAMITFSSTAEAEEAAAQITGVNFHGRELR 127
                  556667788888887.55799****************888637********************************************999886 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.8e-07   0.00051     177     259 ..      53     132 ..      36     151 .. 0.66
   2 ?    0.1   0.3      0.12        72     424     526 ..     302     420 ..     231     434 .. 0.46

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.8e-07
    TIGR01628 177 kftNlYvKnlddsvtedklrelFakfGeitSaiv.kkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraq 259
                  k     ++nl+ + te  lr +  ++G i+ + + ++  +++  g+a + + ++ +A++A+ ++ g +++    g+ l   ++ 
  MMETSP1174-20130828|12413_1  53 KLLCATIRNLPFDTTESDLRSFCENYGTISRVEMpRMLTSDQFAGYAMITFSSTAEAEEAAAQITGVNFH----GRELRAFPHS 132
                  4444457777778888888888888888877766356677777788888888888888887777777766....5555555554 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.12
    TIGR01628 424 nfkinqmmlstqnps..kpeapnalaqlaqqrlqaqgr...........rnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpq...aqsknqmqqvvqdnnlpqkqatksnnkestlt 526
                  + ++n+mm +t ++     ++p +l q++  +   +++           r+  +r+ ++ ++ + +q+n+  k n+a+++  p        + m+++++d    +++ +++++ + +++
  MMETSP1174-20130828|12413_1 302 GTNRNKMMRMTGSMRtfGRDNPRSLSQQTSFGITIPSKcwicssldhigRECPQREATLSTGSAGRQHNQRVKPNNAEMSTSPIpgkCWVCSSMDHIAKDCPYREHTLNAKKTADDSKA 420
                  22222222222222222333355555555555333333444433333333344443333222233333333344444444444221322223666666665555555554444444333 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.4e-07   0.00049     435     495 ..      69     126 ..      23     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.4e-07
    TIGR01642 435 edvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvv 495
                   d++  +++yGt+  +++Pr   + +  +  G   + +++ a+ae A  +++G  F++r +
  MMETSP1174-20130828|12413_1  69 SDLRSFCENYGTISRVEMPRM-LTSD--QFAGYAMITFSSTAEAEEAAAQITGVNFHGREL 126
                  477888899999999999998.3444..445667788999999999999999999988865 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.6e-06    0.0021     205     273 ..      59     127 ..      43     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.6e-06
    TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllr 273
                  +  +  d +e dl+s  e +G i + ++ r  t+ +  G+ ++ f  +   +ea a +   ++ G+ lr
  MMETSP1174-20130828|12413_1  59 IRNLPFDTTESDLRSFCENYGTISRVEMPRMLTSDQFAGYAMITFSSTAEAEEAAAQITGVNFHGRELR 127
                  455556999*********************************************998877777777666 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.5e-06    0.0056      64     120 ..      60     117 ..      55     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.5e-06
    TIGR01648  64 GkiPrdlyedelvPlfekvGkiyelrl.mmdldGknrGyafvtfcnkeeakeavkeln 120
                    +P d  e +l   +e+ G i  + +  m  + +  Gya++tf+   ea+ea  ++ 
  MMETSP1174-20130828|12413_1  60 RNLPFDTTESDLRSFCENYGTISRVEMpRMLTSDQFAGYAMITFSSTAEAEEAAAQIT 117
                  57999*****************98888335578899****************988875 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   8.9e-05     0.052       7      59 ..      59     117 ..      55     126 .. 0.69
   2 ?    2.6   0.0     0.019        11     337     375 ..      97     135 ..      88     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.9e-05
    TIGR01649   7 vRnlpeevveadlvelliefGkvsyvlv...lkgkrq...AlvEfedeesAkalVnfat 59 
                  +Rnlp + +e+dl + ++++G++s v +   l   +    A++ f   + A+++   +t
  MMETSP1174-20130828|12413_1  59 IRNLPFDTTESDLRSFCENYGTISRVEMprmLTSDQFagyAMITFSSTAEAEEAAAQIT 117
                  9***********************99763313332222226666666666666555554 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.019
    TIGR01649 337 etalvemadpqqaqlalthLdkvklfgkklrvavSkqea 375
                  + a++ ++   +a+ a   + +v+++g++lr  +  q+ 
  MMETSP1174-20130828|12413_1  97 GYAMITFSSTAEAEEAAAQITGVNFHGRELRAFPHSQQM 135
                  679****************************98877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.65
# Mc/sec: 889.40
//
Query:       MMETSP1174-20130828|12425_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 368.18
//
Query:       MMETSP1174-20130828|12421_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   10.6   4.0       0.14   10.2   2.7    1.3  1  TIGR02557 HpaP: type III secretion protein HpaP


Domain annotation for each model (and alignments):
>> TIGR02557  HpaP: type III secretion protein HpaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   3.3e-05      0.14      42      93 ..      98     156 ..      61     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.3e-05
    TIGR02557  42 p.......epppscdedrPepaaetraseapaeapldadPalepdalkaeahesaiasr 93 
                          e  + +d+++P++aa++   + p++ p d  Pa++  +++a+a e + ++ 
  MMETSP1174-20130828|12421_1  98 AmvsdmpaEAVEDGDDNAPKDAANQMSESSPPKIPEDPIPAAKISGMPAKAAEDGDDNA 156
                  25555555788999*************************************99988883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 785.17
//
Query:       MMETSP1174-20130828|12422_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1676.86
//
Query:       MMETSP1174-20130828|12426_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.6    3.5  25.2        8.6    3.3  17.5    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  17.5    0.0021       8.6     162     207 ..       3      53 ..       1      56 [. 0.21

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0021
    TIGR02794 162 EeeakakaaaeakkkaEa....e..eakkkaeaeakKakaeaeaKakaeeak 207
                  Ee ak +a  e k+++Ea    +  e + k +ae  K++ae ea++ +e ak
  MMETSP1174-20130828|12426_1   3 EELAKQRADFETKREQEAialqAalEKQEKEAAEHLKKRAELEARQDEE-AK 53 
                  2222222222333333222111011111111111112222222222222.11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      240  (0.058508); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 221.28
//
Query:       MMETSP1174-20130828|12427_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|12428_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 384.32
//
Query:       MMETSP1174-20130828|12429_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   10.4   0.0      0.056   10.0   0.0    1.1  1  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.4e-05     0.056     193     275 ..      48     127 ..      31     136 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.4e-05
    TIGR02035 193 klrskGvtvveyesdyskaveeGrkea.eadplsyfvddeksrdlflGyavaasrlkkqldkkgikvdkehplfvylpcGvGGg 275
                  + r+  v+vv+ e+d  +a e G  e  ++ p+s+fv + +s   +   a  a +l++ ++++  + ++  p++  +  G GG+
  MMETSP1174-20130828|12429_1  48 LEREASVEVVNLETDEVEATEAGEEEKkNSVPISFFVINGRSPAHL---AKQAMKLRE-VKQEKAVAEARMPILQLVARGGGGA 127
                  448899*****************98751678******999997654...333444443.4455556677777777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 798.53
//
Query:       MMETSP1174-20130828|12433_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.5  11.2       0.06   11.3   7.8    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
      0.072   10.7   2.3      0.086   10.4   1.6    1.1  1  TIGR02182 GRXB: glutaredoxin, GrxB family
      0.091    9.5   9.1        0.1    9.3   6.3    1.1  1  TIGR00019 prfA: peptide chain release factor 1
        0.1    8.0  12.5       0.11    7.9   8.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.14    7.7  12.9       0.15    7.5   8.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.18    8.6   9.2       0.22    8.3   6.4    1.0  1  TIGR00414 serS: serine--tRNA ligase
       0.19    8.3   7.5        0.2    8.3   5.2    1.0  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
       0.33    7.7  10.5        0.4    7.4   7.3    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.39    7.7   8.7        0.4    7.7   6.0    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.43    8.7  10.7       0.47    8.6   7.4    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
       0.54    6.5  11.8       0.55    6.5   8.2    1.0  1  TIGR03545 TIGR03545: TIGR03545 family protein
       0.97    6.3   6.4        1.1    6.2   4.4    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        3.9    4.3   9.9        4.4    4.2   6.9    1.0  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family
        4.6    3.2  12.2        4.5    3.2   8.5    1.0  1  TIGR01069 mutS2: MutS2 family protein
        5.4    5.2   9.8        3.5    5.9   3.1    2.1  2  TIGR02976 phageshock_pspB: phage shock protein B
        7.8    2.7  12.2        7.7    2.7   8.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   7.8   0.00023      0.06      61     124 ..      19      77 ..       3      80 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00023
    TIGR00714  61 qrnidLasEqksvrdvafllellklrdeleeieqakdeaaleklkkkvkkeiqsllaalvealk 124
                     ++ ++    +++v++l ell+ ++++ e++qa++    ++l+kk ++  q++++ l e+l+
  MMETSP1174-20130828|12433_1  19 VEAFQEKD----EQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQ-SQDRIQDLEEQLH 77 
                  33444444....55888888888888888888887765555555555443.4555666666654 PP

>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   0.00034     0.086     118     162 ..      19      63 ..      12      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00034
    TIGR02182 118 rkyftkkkeasvgnfsallneteslleeieadleeleklldeesa 162
                  +++f++k e+sv ++++ll+e e+++e  +a  +ele+ l+++++
  MMETSP1174-20130828|12433_1  19 VEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQ 63 
                  789**********************99888888999988887766 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.3   0.00039       0.1      44     100 ..      21      77 ..       2      80 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00039
    TIGR00019  44 sqleeivkkyeeykklqedlkeakellekedkelrelakeeleelekkieeleeqlk 100
                  +  e+ ++  +++ +l ++l++ +el +++++el++  ++  ++ + +i++leeql+
  MMETSP1174-20130828|12433_1  21 AFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLH 77 
                  3334445566789999999999****9999*************************97 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.7   0.00044      0.11     726     789 ..      12      76 ..       1      80 [. 0.43

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00044
    TIGR02169 726 leqleeeeeklkerleeleeklseleeeleekkeelkeleaeie.eleeklaklkealedleael 789
                   + l ++ e+++e+ e++ ++l+el +ele+ +e +++ + e+e +l++k+++ ++ ++dle++l
  MMETSP1174-20130828|12433_1  12 KSDLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEdQLQKKAQQSQDRIQDLEEQL 76 
                  33344444444444444444444444444444444444444443123444444445555555444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.9   0.00057      0.15     297     360 ..      12      76 ..       1      80 [. 0.33

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00057
    TIGR02168 297 isrleqeieilkerleqlekeleeleeqleeleskkeeleeela.eleeeleelkeelesleael 360
                  +s+l q++e  +e+ eq+ ++l+el ++le+ ++ k+ +++el+ +l+++ ++ + ++++le++l
  MMETSP1174-20130828|12433_1  12 KSDLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEdQLQKKAQQSQDRIQDLEEQL 76 
                  33333333333333333333333333333333333333222222122333333333333333333 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.4   0.00084      0.22      13      80 ..      10      78 ..       2      80 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00084
    TIGR00414 13 lvkeklkarglsveidleklselddklkkllskieelq.kkrnelskeigkkkaekkdkieelkkelke 80
                 + k+ l ++ ++++ + e+ +++ d+l ++l++++el+ + + el+ +++kk ++++d+i++l+++l++
  MMETSP1174-20130828|12433_1 10 KCKSDLVQKVEAFQEKDEQSVSQLDELLQELENMRELKqATQDELEDQLQKKAQQSQDRIQDLEEQLHR 78
                 55677777777777777766555555655666666665388999999***9999999999999999876 PP

>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.2   0.00076       0.2     407     469 ..      17      80 ..       2      81 .] 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00076
    TIGR03998 407 eeqae.eeidalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerai 469
                  ++ +  +e d++   +  ++ ++l++++e+ ++++++le+ ++k++++ +++++ Le++l+r++
  MMETSP1174-20130828|12433_1  17 QKVEAfQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLHRNV 80 
                  4433313345666677778888899999999*****************************9986 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.3    0.0016       0.4     201     263 ..      16      78 ..      12      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0016
    TIGR01843 201 ereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelsk 263
                   +++++ q++ +++ ++l +l +el++++e  q +++++  +++++++++q+r+++lee+l +
  MMETSP1174-20130828|12433_1  16 VQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLHR 78 
                  5778888888899999999**********9999**************************9975 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.0    0.0015       0.4      63     126 ..      14      77 ..       3      81 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0015
    TIGR03752  63 tlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqa 126
                  +lv ++++ +++ ++  ++ ++l +e e++++ ++ ++++++++l++++++ +++++ l+e+ +
  MMETSP1174-20130828|12433_1  14 DLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLH 77 
                  7899999999999999999999999999999999999999999999999999999999988766 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   7.4    0.0018      0.47      29      91 ..      17      79 ..       3      81 .] 0.73

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0018
    TIGR03495 29 ekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlren 91
                 +k e+  ++ ++ +++ +  l+ l+   + +++ q +L++ql++ ++++++r + +e+ l+ n
  MMETSP1174-20130828|12433_1 17 QKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLHRN 79
                 444555566677777788888888888888888888899999988888888888888766655 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.2    0.0021      0.55     195     259 ..      14      75 ..       1      80 [. 0.61

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0021
    TIGR03545 195 eykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkka 259
                   +++++ea +e+d +++ +l + l+el++++   +a ++   +++++lqk+ +q + ++++l+++
  MMETSP1174-20130828|12433_1  14 DLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQD---ELEDQLQKKAQQSQDRIQDLEEQ 75 
                  578999999999877777777777777776543333333...34455555555555555555544 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.4    0.0041       1.1       6      50 ..      34      78 ..       3      80 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0041
    TIGR01554  6 eklaelakelkkltedekeeeaeeekkekdalkaeidkleaeier 50
                 ++l ++ +++++l++++++e++++ +k+ ++ +++i++le+++ r
  MMETSP1174-20130828|12433_1 34 DELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQLHR 78
                 345555666778888888888888888888888888888888866 PP

>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.9     0.017       4.4      14      73 ..      18      78 ..       9      80 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.017
    TIGR01541 14 klkklnaaeekvlasrkdevkaleklekleeakqk.alelleklaeaekseraqykrqlda 73
                 k +  ++ +e+++ +++++ ++le ++ l +a q   +  l+k a++ +++ +++  ql++
  MMETSP1174-20130828|12433_1 18 KVEAFQEKDEQSVSQLDELLQELENMRELKQATQDeLEDQLQKKAQQSQDRIQDLEEQLHR 78
                 567788999999999****999999999977777655556666677777777777777765 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   8.5     0.017       4.5     517     578 ..       9      70 ..       1      81 [] 0.39

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.017
    TIGR01069 517 iekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaak 578
                  i+  ++ ++++e  +e+ e+   +l+ l +ele+ ++  ++ +++l+ +l+k+aq+     +
  MMETSP1174-20130828|12433_1   9 IKCKSDLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQ 70 
                  44444444444444444444444444444444444444444444444444433333322222 PP

>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6      0.13        33      36      55 ..      25      44 ..      14      49 .. 0.58
   2 ?    5.9   3.1     0.014       3.5      38      65 ..      48      76 ..      41      80 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.13
    TIGR02976 36 lstddlalLeelsekakrle 55
                  +++ +++L el ++ + ++
  MMETSP1174-20130828|12433_1 25 KDEQSVSQLDELLQELENMR 44
                 34445555555555555555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.014
    TIGR02976 38 tddlalLe.elsekakrleeRidtLEriL 65
                 +  +  Le +l++ka++ ++Ri+ LE+ L
  MMETSP1174-20130828|12433_1 48 QATQDELEdQLQKKAQQSQDRIQDLEEQL 76
                 44444443289***************876 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.5      0.03       7.7      74     138 ..      12      76 ..       1      81 [] 0.32

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.03
    TIGR03319  74 rrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeL 138
                  + + +qk e   ++ e+++++ +e l++ e+  e k+++ +e e +l++k ++ ++ +++ +e+L
  MMETSP1174-20130828|12433_1  12 KSDLVQKVEAFQEKDEQSVSQLDELLQELENMRELKQATQDELEDQLQKKAQQSQDRIQDLEEQL 76 
                  22222333322222222333333333333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       842  (0.205266); expected 82.0 (0.02)
Passed bias filter:                      519  (0.126524); expected 82.0 (0.02)
Passed Vit filter:                        77  (0.0187713); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.65
# Mc/sec: 164.48
//
Query:       MMETSP1174-20130828|12434_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 1236.79
//
Query:       MMETSP1174-20130828|12438_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1174-20130828|12439_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-07   27.6   0.0    7.8e-07   27.2   0.0    1.2  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    0.00033   17.1   0.0    0.00036   17.0   0.0    1.0  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
      0.004   14.6   0.0     0.0049   14.3   0.0    1.1  1  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase
     0.0058   13.8   0.0     0.0077   13.4   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.6e-10   7.8e-07      58     114 ..      41      97 ..      33     103 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 7.6e-10
    TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfke 114
                  ++ +av+ + ++qG+G+ L++  ++ + ++g  +++L     N +A ++Y klg+ +
  MMETSP1174-20130828|12439_1  41 LSDLAVSSDRRRQGVGQGLVRFCESLCLNSGHDRLYLKMQRPNYMASRMYAKLGYSS 97 
                  6789***************************************************86 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.6e-07   0.00036     158     213 ..      41      96 ..      11     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.6e-07
    TIGR03103 158 lWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfr 213
                  l  lav+ + ++ GvG+ lvr       + g   l l +   n+ a ++y klg+ 
  MMETSP1174-20130828|12439_1  41 LSDLAVSSDRRRQGVGQGLVRFCESLCLNSGHDRLYLKMQRPNYMASRMYAKLGYS 96 
                  5569**************************************************96 PP

>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.8e-06    0.0049     126     183 ..      41      98 ..       9     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.8e-06
    TIGR02382 126 iGllavfpgvqirGiGarlmaaakawarrrGltrlrvatqvgnvaalrlyirsGasie 183
                  +  lav    + +G+G  l+   ++ + + G  rl +  q  n  a r+y + G s e
  MMETSP1174-20130828|12439_1  41 LSDLAVSSDRRRQGVGQGLVRFCESLCLNSGHDRLYLKMQRPNYMASRMYAKLGYSSE 98 
                  556888889999***************************************9997655 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   7.5e-06    0.0077     234     286 ..      44      96 ..      19     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.5e-06
    TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFt 286
                  ++v+++ +++G+G+ L++       + g+ +  L ++  n  A r+Y kLg++
  MMETSP1174-20130828|12439_1  44 LAVSSDRRRQGVGQGLVRFCESLCLNSGHDRLYLKMQRPNYMASRMYAKLGYS 96 
                  6899999************99999999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 416.81
//
Query:       MMETSP1174-20130828|12441_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.89
# Mc/sec: 197.24
//
Query:       MMETSP1174-20130828|12443_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 214.04
//
Query:       MMETSP1174-20130828|12445_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 224.74
//
Query:       MMETSP1174-20130828|12447_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 383.97
//
Query:       MMETSP1174-20130828|12448_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.8   0.1       0.18    9.3   0.0    2.0  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00061   17.2   0.3       0.28    8.5   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.023   10.7   3.4       0.55    6.1   0.2    2.0  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00015       0.2      56      82 ..       3      29 ..       1      35 [. 0.89
   2 !    9.3   0.0   0.00013      0.18      55      80 ..      44      69 ..      32      72 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00015
    TIGR02552 56 lgLaaclqalkeyeeAiaaYalaaald 82
                  +La++l+a+++++eA   Y +a++ +
  MMETSP1174-20130828|12448_1  3 SALASVLKAQSKWDEAEVLYRRALSTK 29
                 69*********************9876 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00013
    TIGR02552 55 wlgLaaclqalkeyeeAiaaYalaaa 80
                 + +La++l+a+++++eA   Y +a++
  MMETSP1174-20130828|12448_1 44 MSALASVLKAQSKWDEAEVLYRRALS 69
                 789********************986 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00027      0.37      69      97 ..       3      31 ..       1      37 [. 0.91
   2 !    8.5   0.0    0.0002      0.28      63      95 ..      39      71 ..      30      72 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00027
    TIGR02521 69 lalAlyyqqlgelekAeesfrkAltlkpn 97
                 +alA +++ + + ++Ae  +r+Al++k++
  MMETSP1174-20130828|12448_1  3 SALASVLKAQSKWDEAEVLYRRALSTKEE 31
                 799**********************9987 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0002
    TIGR02521 63 kdadanlalAlyyqqlgelekAeesfrkAltlk 95
                 + ad  +alA +++ + + ++Ae  +r+Al++k
  MMETSP1174-20130828|12448_1 39 DTADGMSALASVLKAQSKWDEAEVLYRRALSTK 71
                 5678889***********************986 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0004      0.55     434     461 ..       4      31 ..       1      40 [. 0.59
   2 ?    6.0   0.1   0.00044       0.6      87     114 ..      42      69 ..      39      72 .] 0.82

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0004
    TIGR03939 434 alaeveraRgwprrAeqllkkaeslepd 461
                  ala+v +a+ + ++Ae l+++a s +++
  MMETSP1174-20130828|12448_1   4 ALASVLKAQSKWDEAEVLYRRALSTKEE 31 
                  5566666666666666666666665555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00044
    TIGR03939  87 relealAkAaRnekqwdkAlelyrkllq 114
                  +++ alA+ +  + +wd+A+ lyr++l+
  MMETSP1174-20130828|12448_1  42 DGMSALASVLKAQSKWDEAEVLYRRALS 69 
                  5678899999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1174-20130828|12449_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.65
# Mc/sec: 270.07
//
Query:       MMETSP1174-20130828|12452_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 300.28
//
Query:       MMETSP1174-20130828|12453_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 472.61
//
Query:       MMETSP1174-20130828|12451_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-06   24.1   0.0    1.8e-05   22.7   0.0    1.7  1  TIGR00229 sensory_box: PAS domain S-box protein
     0.0016   14.9   0.0     0.0027   14.1   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
  ------ inclusion threshold ------
      0.031   11.2   0.0      0.052   10.4   0.0    1.3  1  TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
      0.066    9.3   4.4       0.11    8.5   2.6    1.5  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.7e-08   1.8e-05      18     104 ..     265     350 ..     260     354 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.7e-08
    TIGR00229  18 iivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspirdag 104
                  i  +d   +i  vN+a+ e++G+s +e++G +++ ++ +       +r++ +l  + + +    + ++k+G+ +w  ++  p+++ g
  MMETSP1174-20130828|12451_1 265 ITSADPPFKINAVNKAWTELHGFSVKEVRGSTLNLVHGPATDAYAVQRLMDDLHNQLPSTTLVLN-YHKSGQAFWNYLRMFPLSSTG 350
                  5667888899***********************99777777777777888888844344444444.6*********99999998544 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.7e-06    0.0027      21     105 ..     269     352 ..     252     371 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.7e-06
    TIGR02938  21 dlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGet 105
                  d    i  +n+a++e+ G++ +ev G    ++    t     q l + l ++ P +  +ln +k g+ +   l + P+   +G+t
  MMETSP1174-20130828|12451_1 269 DPPFKINAVNKAWTELHGFSVKEVRGSTLNLVHGPATDAYAVQRLMDDLHNQLPSTTLVLNYHKSGQAFWNYLRMFPL-SSTGQT 352
                  555677889**********************************************************99999999885.445554 PP

>> TIGR03535  DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.1e-05     0.052       9      98 ..     208     299 ..     201     304 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.1e-05
    TIGR03535   9 atvtadgtvldvWypelelgea...aeagterleaeleelaa.lagedeargvervvvttkiadldeapadaadaylrlhllshrlvkPntvnl 98 
                  a+ tad ++ d  +    l+ +   + a   + ++ +++l+  l++ d+ r++e  v+t   ad   ++  ++ a+  lh +s + v+  t+nl
  MMETSP1174-20130828|12451_1 208 ASFTADCKIKDFVFQFDVLSVTqalSRALGRSFDKVPNTLTMaLEQMDDPRNIEACVITS--ADPPFKINAVNKAWTELHGFSVKEVRGSTLNL 299
                  67778888888766544443331122333334444477777658899*******999888..89999999*********************998 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.6   0.00011      0.11     306     374 ..      21      89 ..      19      94 .. 0.95
   2 ?   -2.1   0.0      0.17   1.8e+02     635     662 ..     306     333 ..     303     334 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00011
    TIGR03375 306 llqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsallt 374
                  l q ++++  +e++r+s ++n +lve l++   +  ++ e++ q k e+  a l + +++ r+l+ +l+
  MMETSP1174-20130828|12451_1  21 LTQDKIKERNREHARTSRMRNKVLVENLKRAVVMLSQKCERHEQMKQENQAALLENHASQRRVLQRMLM 89 
                  6899************************************************************99887 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.17
    TIGR03375 635 DnsseekllerLkelladkTlvlvtHrt 662
                  D+ + ++l++ L++ l  +Tlvl  H++
  MMETSP1174-20130828|12451_1 306 DAYAVQRLMDDLHNQLPSTTLVLNYHKS 333
                  7777899*****************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1114.57
//
Query:       MMETSP1174-20130828|12455_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 617.05
//
Query:       MMETSP1174-20130828|12459_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.64
# Mc/sec: 327.91
//
Query:       MMETSP1174-20130828|12458_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 707.61
//
Query:       MMETSP1174-20130828|12462_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   11.8  12.5     0.0089   11.6   8.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.019   10.4  12.9      0.021   10.3   8.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.13    9.1  10.3       0.14    9.0   7.2    1.0  1  TIGR00414 serS: serine--tRNA ligase
       0.21    8.3  12.7       0.25    8.1   8.8    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        0.3    8.1   6.1       0.38    7.8   4.2    1.1  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
       0.78    6.6   9.9        1.2    6.0   6.9    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        5.3    4.0   9.0          6    3.8   6.3    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   8.7   1.5e-05    0.0089     323     499 ..      29     118 ..       1     124 [. 0.22

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.5e-05
    TIGR02168 323 eqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarleslesl 499
                  ++l+ + ++++ ++e l +l+ +l+ +++  ++l++++ee                                                                                       +  +++ee  + ee+l + ++e++++++++++++++laq++ + ++le++
  MMETSP1174-20130828|12462_1  29 DNLKSTTQELDVTKELLVTLASKLSVTEKLSDELRSKMEE---------------------------------------------------------------------------------------MRITQQEEITNKEEELLRSRKEMDAMKKDMDDLKAQLAQVALEKKVLEDQ 118
                  1111111111111111111111111111111111111111.......................................................................................11111111122222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.9   3.5e-05     0.021     743     838 ..      27     121 ..       1     125 [. 0.43

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.5e-05
    TIGR02169 743 leeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqe 838
                  ++++l+++ +el   ke l +l+++++  e+   +l+ ++e++    ++e+i ++eeel   ++e+  +++ ++++ a+l +  lek++le++ q+
  MMETSP1174-20130828|12462_1  27 MRDNLKSTTQELDVTKELLVTLASKLSVTEKLSDELRSKMEEMRI-TQQEEITNKEEELLRSRKEMDAMKKDMDDLKAQLAQVALEKKVLEDQNQN 121
                  334444444444444444444444444444444444444444433.23333444444444444444444444444444444444444444444444 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.2   0.00024      0.14       6     101 ..      26     121 ..       2     125 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00024
    TIGR00414   6 llrenlelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeelee 101
                  l+r+nl+   ++l++ ++   +   kls +++   +l+sk+ee++  ++e + + +++  +++++++ +kk++++lk +l+++  e k le++ ++
  MMETSP1174-20130828|12462_1  26 LMRDNLKSTTQELDVTKELLVTLASKLSVTEKLSDELRSKMEEMRITQQEEITNKEEELLRSRKEMDAMKKDMDDLKAQLAQVALEKKVLEDQNQN 121
                  566777777777776666666667777777777777777777777666655555555555555556667777777777777776666555555544 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.8   0.00042      0.25     135     236 ..       4     109 ..       1     122 [. 0.49

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00042
    TIGR01843 135 esrksalraqlesleaqikqleaeleglqaqlqal...rqqleliseelealrkLkekglvsrlel.Lelereraelqgelaeleaeleklkaeldeleeklqele 236
                  +++k++l+aq + le++++ ++  +++l++ +q+l   ++ l  ++++l +++kL ++   ++ e+ +++++e+ + ++el ++++e+ ++k+++d+l+++l+++ 
  MMETSP1174-20130828|12462_1   4 DDTKDKLNAQAYFLESEVNGSRLMRDNLKSTTQELdvtKELLVTLASKLSVTEKLSDELRSKMEEMrITQQEEITNKEEELLRSRKEMDAMKKDMDDLKAQLAQVA 109
                  5556666666666666666655555555444444311144555556666666666554333333332344445555555555555555555555555555555543 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.2   0.00065      0.38      11      72 ..      42     103 ..      30     115 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00065
    TIGR00064  11 eevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklelke 72 
                  +e L++   +l+v+ek+++el++++ e +++++e++++  +e l++ ++ +  k+ +++lk+
  MMETSP1174-20130828|12462_1  42 KELLVTLASKLSVTEKLSDELRSKMEEMRITQQEEITNKEEELLRSRKEMDAMKKDMDDLKA 103
                  56788888999*************************99999999988877777766666633 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.9     0.002       1.2       3      66 ..      57     123 ..      55     125 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.002
    TIGR01554   3 elreklaelakelk...kltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasg 66 
                  +l ++l ++++e++   +++ ++keee    +ke da+k+++d+l+a++++   +++ +e ++++++
  MMETSP1174-20130828|12462_1  57 KLSDELRSKMEEMRitqQEEITNKEEELLRSRKEMDAMKKDMDDLKAQLAQVALEKKVLEDQNQNKP 123
                  6788999999999965533333334444444455566777777777777777777666666666555 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   6.3      0.01         6      39     135 ..      23     119 ..       4     125 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.01
    TIGR03752  39 laelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklk.kenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldel 135
                    +l  ++lk++  e d  ++ l tl+++l+ ++k  ++l+++ e+++ +++e+++++ee++  r +++++a kk++++ k ql++  ++ + l d+ 
  MMETSP1174-20130828|12462_1  23 GSRLMRDNLKSTTQELDVTKELLVTLASKLSVTEKLSDELRSKMEEMRiTQQEEITNKEEEL-LRSRKEMDAMKKDMDDLKAQLAQVALEKKVLEDQN 119
                  45566677777777778888888888888888888888887777776623444444444444.44556666666666666666665555444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       556  (0.135544); expected 82.0 (0.02)
Passed bias filter:                      285  (0.0694783); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.21s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 408.84
//
Query:       MMETSP1174-20130828|12463_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|12461_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.3   4.2       0.28    6.9   2.9    1.1  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.9   6.9e-05      0.28     130     268 ..     141     276 ..     112     281 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 6.9e-05
    TIGR00592 130 svlkkkfssaakvvaindksnetaaavkkvkkaspvskrkllekilvpvplkraefaaedvqkeedeeeelasvaietlfedqedl.lesdesaadeekveetedviakkkaaeseeeervveekkrkkpttgsyvesvs 268
                  +++  k  s a+v+   dk+ ++  a +++++++ + ++ +l++ +  v      f++e ++  e    +      et+++d e + +e +e++ad +k+ ++  v+   ++ae+  +e  ++++++ k+t  s v+++s
  MMETSP1174-20130828|12461_1 141 EETIAKGASEASVEIYADKIFHKYDADNSGQIDITIFRQ-FLQDASRGVVEATPSFSSEWSDFSEWS--KETYSTAETMYNDAETMaYETAEKTADSIKDTAK-SVVDAVNDAETMAYETAEKTADSIKDTAKSVVDAFS 276
                  555556667777788889999999999999999999998.677777777678888888888888544..4455566888****97779**************8.699999999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.63
# Mc/sec: 1108.29
//
Query:       MMETSP1174-20130828|12457_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-293  972.8   0.0   1.5e-293  972.6   0.0    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
     1e-155  517.7   0.3   1.2e-155  517.4   0.2    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase
    1.1e-78  262.9   0.1    1.4e-78  262.5   0.1    1.0  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    4.3e-52  175.3   0.0    5.2e-52  175.0   0.0    1.1  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    8.3e-49  164.5   0.0    1.2e-48  164.0   0.0    1.1  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    4.3e-43  145.4   0.0    1.3e-42  143.8   0.0    1.7  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.5e-35  120.5   0.0    8.4e-19   65.2   0.0    2.2  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    9.6e-34  114.8   0.0    7.1e-33  111.9   0.0    2.0  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
      5e-33  112.0   0.0    3.9e-32  109.0   0.0    1.9  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
      2e-26   90.3   0.1    9.8e-26   88.1   0.0    1.9  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    2.9e-20   70.1   0.0    1.1e-13   48.4   0.0    2.9  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.5e-14   50.2   0.1    3.6e-10   35.7   0.0    2.6  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    2.2e-12   44.2   0.0    1.3e-08   31.8   0.0    2.3  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
     0.0045   14.5   0.0      0.008   13.7   0.0    1.3  1  TIGR03089 TIGR03089: TIGR03089 family protein
  ------ inclusion threshold ------
      0.015   13.0   0.0       0.55    8.0   0.0    3.2  4  TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  972.6   0.0  5.7e-296  1.5e-293       3     627 ..      34     654 ..      32     656 .. 0.98

  Alignments for each domain:
  == domain 1    score: 972.6 bits;  conditional E-value: 5.7e-296
    TIGR02188   3 eleeykelyeeaiedpekfwaklakeelewlkpfekvldeslep.kvkWfedgelnvsyncvdrhvekrkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvdeegkeveeeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaege.ellgdvstledpsvveelk 627
                  + +eyk+l + +i++p++fw+ +a+  l+w+++f+ v++ ++e+ +++Wf +g+ln+sy c+d+h+++r d+vaiiwe+de+g+ s+++tY+el+revc++an++k++Gv+kgd+vaiY+pm+p+++++mlac+RiGavhsvvfaGfsaeal++Ri+ a++k v  +deg Rggk+++lk+ivd+a e  +  vekv v+krtg +v  w+egrD+w++el +k ++ +c++e +dsed++fiL+tsGstGkPkGv h+t+Gyll+aa+t+k+ fd++++di++C+aD+GW+tGhsYivygPL+nG tt++fe++ptyp+++r+w++++k+kvt+fYtaPtaiRalm+ g+e+v k+dls+lrvlg+vGepinpeaw+WyyevvG+++c+ivdt+WqtetGg+++tp+pg +t+lkpgs+ lP++Gi+++v+d +g+e+e ++ +g+L+ik++wP+++r++y+d+ r+++tY++ +kg++f GDg+rrd+dG++wi+GRvDdv+n sGhr+gtaeiesal +h++ aeaavvg+p++ikg  ++a+v+l +gve+++ ++ k+lk++vr+ igp+a+pd i  v+ lPktRsGkimRR+lrk+++ge ++lgd+stl+d+svv e++
  MMETSP1174-20130828|12457_1  34 KFDEYKRLQAASIANPDEFWGAQARAYLSWFRDFDVVQQGDFEHgDIAWFLNGKLNASYCCIDQHLAERGDQVAIIWEADEPGD-SKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKRGGKTLPLKRIVDQACEGLT-VVEKVFVYKRTGGDVD-WVEGRDFWMNELAAK-QRPYCPCEFMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSYIVYGPLVNGTTTVMFESTPTYPNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNQQCSIVDTYWQTETGGHVMTPIPG-ITPLKPGSCCLPFYGIDPVVLDASGNEIEGNNVEGILCIKSTWPGIMRSLYNDHARYMSTYMDIYKGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESSD-AVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRKVVAGEeDQLGDTSTLADSSVVPEII 654
                  6799***************************************99*************************************95.*******************************************************************************************************998.7*************66.**************7.*****************************************************************************************************************************************************************************************.5****************************666669************************************************************************************************************999.59**********************************************999**************9987 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.4   0.2  4.6e-158  1.2e-155       2     624 ..      37     655 ..      36     659 .. 0.93

  Alignments for each domain:
  == domain 1    score: 517.4 bits;  conditional E-value: 4.6e-158
    TIGR02316   2 ayeelyqrsieepeafwaeqarr.idwqtpfarvld.dsnlpfarwfvggrtnlcynavdrhlekrgeqlalvavssetgeertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadagarggkvieykklldaaiaeaqhkpahvllvdrglaklrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgk...pvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpnekgllvvaaplppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrsgkllrraiqavaegr..dpgdlttiddpaaleqvre 624
                  +y+ l   si +p++fw+ qar+ + w   f  v + d +     wf +g+ n  y ++d+hl++rg+q+a++  + e g+ +++tyr+l+rev ++a a++  gvr+gd v iy+pm+++ a+++lac+riga+hsvvf gf++++l  ri+ a+ k +  +d g rggk ++ k+++d+a++      ++v++ +r   ++  v grd  +  l+ +      ++e+++s++  +il+tsg+tgkpkgv   + gy +  a++ ++ f+ + gd++ + +d gw+ ghsyivy+pl+ g +tv++e +pt p+ g +w +v+k++v+++++aptair l ++   ++ k+dls+l+vl   gep++  + +w  + +g+   +++d ywqtetg  v++  +g+   p k gs  lp+yg +  vld +  e  g n  g+l++++   pg ++++++d ar++ ty+  +k  ++   d + rdedg+  i gr ddv+n +ghr+gt eie +++ h++ ae+avvg   ++kg    a++il      +  +++ a+ k+l+++v s +g +a+p  +  v+ lpktrsgk++rr ++ v+ g   + gd +t+ d + + ++  
  MMETSP1174-20130828|12457_1  37 EYKRLQAASIANPDEFWGAQARAyLSWFRDFDVVQQgDFEHGDIAWFLNGKLNASYCCIDQHLAERGDQVAIIWEADEPGDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKRGGKTLPLKRIVDQACEG-LTVVEKVFVYKRTGGDVDWVEGRDFWMNELAAKQ-RPYCPCEFMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSYIVYGPLVNGTTTVMFESTPTYPNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNqqcSIVDTYWQTETGGHVMTPIPGIT--PLKPGSCCLPFYGIDPVVLDASGNEIEGNNVEGILCIKSTW-PGIMRSLYNDHARYMSTYMDIYKGYFFL-GDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILA-----AGVESSDAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRKVVAGEedQLGDTSTLADSSVVPEIIS 655
                  6999999***************85799999987754244556678******************************************************************************************************************************************76.566789*********************9999765.5789***********************************************************************************************************************************************9999**99988753337********************96..7899***********9999987777778999******9875.7*********************987775.48999*************************************************************98.....44556678999**************************************98875541156********998887755 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.1     5e-81   1.4e-78      29     628 ..      30     635 ..      10     650 .. 0.89

  Alignments for each domain:
  == domain 1    score: 262.5 bits;  conditional E-value: 5e-81
    TIGR01217  29 rfGaalgdydalyrwsvdeldafwkavwefsdvvfssaekevvddskmlaar.ffpgarlnya....enllrkkgsedallyvdee.kesakvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvynGkehdrrekvrevakelpdlravvlipyvgdreklapkvegaltledllaaaqaaelvfeqlpfdhplyilfssGttGvpkaivhsaGGtlvqhlkehvlhcdltdgdrllyyttvGwmm.wnflvsg.latGatlvlydGsplvpatnvlfdlaeregitvlGtsakyvsavrkkglkparthdlsalrlvastGsplkpegfeyvyeeika.dvllasisGGtdivscfvganp.slpvykGeiqapglGlaveawdeeGkpvtgekGe..lvvtkplpsmpvrfwndedGskyrkayfdkypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigqeqedgeervvlfvklasGatldealvkeikdairaglsprhvpskiievagiprtlsGkkvevavkdvvaGkp 628
                  ++   + +y+ l   s+ + d+fw a  + + +   +  + v +++   ++  +f + +ln +    ++ l ++g + a+++ ++e  +s + t+ el r v+++a+a++  Gv+kGd va y+p +p+  + +la++ +Ga+ s +   f a+++ dr +  + k +f+ d  + +Gk    +  v +   +l+ +++v +    g    ++  veg  ++ + laa q +    e +  +  ++ilf+sG+tG pk + hs+ G l+      ++  dl++gd++   + +Gw+    ++v g l+ G+t v+++ +p+ p+    +dl+++ ++t + t+   + a+ + g + + ++dls+lr++ + G p++pe++++ ye + + +  +      t+     +   p   p+  G    p  G++  + d +G+ + g++ e  l +  + p     ++nd   ++y ++y+d y+g +  Gd ++    G   i Gr d  ln +G r+G+aei  a+ + +  +e+ v+g  ++  +  v  +v la+G++ ++a++k++k+a+r+++ p   p+ i  v+g+p+t sGk++   +++vvaG+ 
  MMETSP1174-20130828|12457_1  30 KCYDKFDEYKRLQAASIANPDEFWGAQARAY-LSWFRDFDVVQQGDFEHGDIaWFLNGKLNASycciDQHLAERGDQVAIIWEADEpGDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKRGGKTLPLKRIVDQACEGLTVVEKVFVYKRTG--GDVD-WVEGRDFWMNELAAKQRPYCPCEFMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKVNFDLREGDIYACVADCGWITgHSYIVYGpLVNGTTTVMFESTPTYPNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNqQCSIVDTYWQTETGGHVMTPIPgITPLKPGSCCLPFYGIDPVVLDASGNEIEGNNVEgiLCIKSTWPGIMRSLYNDH--ARYMSTYMDIYKGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESSDAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRKVVAGEE 635
                  55667889****************9987755.455567777777777776666*******9542233677888888999999888878999*********************************************************************************99999999999999999999998666655444444..4445.59*******************************************************************************97467999875899*****************************************************************************9987566676666667776666666662347777**********************99864432667778999999999986..8*********************************************************************99999****************************************************************975 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   0.0   1.9e-54   5.2e-52       4     507 ..      89     629 ..      86     630 .. 0.84

  Alignments for each domain:
  == domain 1    score: 175.0 bits;  conditional E-value: 1.9e-54
    TIGR02262   4 naaedlldrnvvegrgdklafi...d...dvsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvsee......llp...vlkevlaklpdleklvvvgak....p..agekqlaellateseqekaaa.tkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerpt...pdavfdrlrrvkptifygvptlyaaml..adpelkaedekrlrlctsaGealpeevGkrwkarfGvd...ildGvGstellhiflsnlpd..dvkyGtsGkpvpGyrlrlvddggedv.adgevGellvsgpssaag..ywnnreksratfeG...ewtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfklre 507
                  na+   +d+ ++  rgd++a i   d   d ++++y el +ev +va+a++  Gv++ + v++ +    d  +++l   r G v  ++ + ++a+  +  +e ++++ v+v++e       lp   +++++   l  +ek+ v  ++    +  +g++   ++la+++    +     ++d  f l++sGstG+pkGv h  +     a + ++  ++lre+d+    a   +  G    +  pl  G+t+v++   pt     + +d ++++k t fy++pt   a++   d+ + + d ++lr+  + Ge++  e  k + +  G     i+d    te +   ++  p+   +k G++  p  G    ++d +g+++  +++ G l ++++  + +   +n++++  +t++    ++   Gd   r++dG y  +Gr dd+l  sG  +   e+esal +h++  eaavvg   + +     a+v+l+ g + ++a+ ++lk+ v+++++p+  p  i  v  lpkt +Gki r  lr+
  MMETSP1174-20130828|12457_1  89 NASYCCIDQHLA-ERGDQVAIIweaDepgDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEgkrggkTLPlkrIVDQACEGLTVVEKVFVYKRTggdvDwvEGRDFWMNELAAKQRPYCPCEfMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSYIVYGPLVNGTTTVMFESTPTypnHGRYWDLVQKHKVTQFYTAPTAIRALMrfGDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNQqcsIVDTYWQTETGGHVMTPIPGitPLKPGSCCLPFYGIDPVVLDASGNEIeGNNVEGILCIKSTWPGIMrsLYNDHARYMSTYMDiykGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESSDAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRK 629
                  566666666554.46898888743322225689******************************************************************************9864444444551115556666666666666655443323144677777788888777766665167899****************************999*****************************************99998842245799****************9988762257777788899************999999999999863333**********9888999997335799999999999987777766655516778899***99776665337999999999998722245568***************************************************98888888899****************************************************99996 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   4.3e-51   1.2e-48      28     537 ..      95     628 ..      88     629 .. 0.82

  Alignments for each domain:
  == domain 1    score: 164.0 bits;  conditional E-value: 4.3e-51
    TIGR03208  28 ldaavarapdkpalvalrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvp.ksfrgfdhaamarelqsk...lpalrqvvvvdgdgdddfdallvtaerdddpdaa..ailrgdrlspddvtqliytsgttgepkgvmhtan.tllsnilayaerlelgegdvilmaspmahqtgfmyglmlplvlrasavlqdiw....naakaaeliretgvtftmastafltdlaravkes.ge.pvsslktflcagapipgalverarealgak...ivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadgaklsagev.grllvraa...snfggylkrphlnavdae...gwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlktgasldfaalveflkaqkvalq..yiperlvvrdalpatpagkiqkfrlr 537
                  +d+ +a+  d++a++   +e g+ ++++yrel   v ++a  ++  gv +gd v++ +p   ++++ +lac+rigav   ++  f  + l   +++a+sk + v  +  rg     + r + +    l  + +v v +  g d  d +     + ++  a        + +  +d+  +++tsg+tg+pkgv h++   ll   ++    ++l+egd+    +     tg+ y +  plv ++++v+ +      n  +  +l+++++vt   ++ + +  l r  +e  g+  +s+l+ +   g pi +   +   e++g +   iv ++  te+g   +t           +  lp+ g++  v+da g+++  ++v g l ++++      + y    ++ ++  +   g+f  gd    d +g+  i+gr  dv+   g  i   eie+ l khp+ a+ a+v++p +  g  +ca+v+l  g   + a l +  +a + a      p+ +  +  lp+t +gki +  lr
  MMETSP1174-20130828|12457_1  95 IDQHLAERGDQVAIIWEADEPGDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTdEGKRGGKTLPLKRIVDQAcegLTVVEKVFVYKRTGGD-VDWVEGRDFWMNELAAKqrPYCPCEFMDSEDLMFILFTSGSTGKPKGVSHSTAgYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSYIVYGPLVNGTTTVMFESTptypNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDEMvGKyDLSTLRVLGTVGEPINPEAWKWYYEVVGNQqcsIVDTYWQTETGGHVMTPIPGITPLKPGSCCLPFYGIDPVVLDASGNEIEGNNVeGILCIKSTwpgIMRSLYNDHARYMSTYMDiykGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESSDAVLKNLKNAVRSAIGpfAQPDIIAPVTGLPKTRSGKIMRRILR 628
                  578899999*******************************************************************************************6666505566666555555544431115556677777666654.454444333333332220024556677899********************75516777777777889***********************************988542223778999*********888888889999999988535536889999********************975222666788899999888888888888888999*******************9998466778775222233446666677776543334*********************************************************************************999999999988862145777788899*********987776 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0   4.9e-45   1.3e-42       1     409 []     122     559 ..     122     559 .. 0.83

  Alignments for each domain:
  == domain 1    score: 143.8 bits;  conditional E-value: 4.9e-45
    TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval........eailleeleekaaedasaeeaaeak.............................skpddlayviyTSGStGkPKgVlvehrslvnllaslar.ryelseedrvlqfsslaFDlsveei.flallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea....see.lkslrlvllgGealtaelverlrarae..evrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.lrpvpvgvvGELyigGa..gvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  tYreL +++ ++A+a+k+a gvr+gd+Va++++  ++l v++la+ + Ga++ ++ +   ae l+  +e ak k++++++e +   ++++l        e          +  ++    ++  +                              +++dl+++++TSGStGkPKgV  + ++ + ++a +++ +++l+e+d +++++   + +  + i +++l++G t+v+ +++ + ++   + +l++++kvt + + p+ +++l+        +  l++lr++ ++Ge +++e+ + + + ++  +++++ +Y  TEt  +v+ + ++   ++  +p + + p+ +++ +vld++ ++   ++v G L+i+ +  g++r  +n+ ++  +++++      +g   +  GD +r+++dG   + GR+Dd +  +G+Ri  +Eie+ala++p+ +ea+v
  MMETSP1174-20130828|12457_1 122 TYRELYREVCKVANAMKDA-GVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKRGGKTLPLkrivdqacE--------GLTVVEKVFVYKR--TggdvdwvegrdfwmnelaakqrpycpcefMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKvNFDLREGDIYACVADCGWITGHSYIvYGPLVNGTTTVMFESTPTYPNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGdemvGKYdLSTLRVLGTVGEPINPEAWKWYYEVVGnqQCSIVDTYWQTETGGHVM-TPIPGI-TPL-KPGSCCLPFYGIDPVVLDASgNEIEGNNVEGILCIKSTwpGIMRSLYNDHARYMSTYMDI----YKG--YFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAV 559
                  9****************96.5*********************************************************9998887777777444444442........3333222222111..12244555566788888888888899999988999*************************9999999989999*************987666552789****88888888888866667777777777************9998885555334456******************99999998899***********99995.544444.333.5889****************67777899*******9853367777777666666666554....333..7999***********************************************98 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   1.4e-17   3.8e-15      23     215 ..     118     320 ..      95     417 .. 0.75
   2 !   65.2   0.0   3.1e-21   8.4e-19     398     516 ..     508     629 ..     485     630 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 1.4e-17
    TIGR03098  23 drtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvk.llvtsker.....ldaledalakchdlrtl..ilvdepekasekkagaevlsweklkaleeaaakvdvid.ddlaailYtsGstGrPkgvvlshrn.lvaGaksvaqyLelredDrllavLPlsf 215
                  ++++ty +L +ev+++a+++k  g+++g+ vaiy++   +  ++++a++++g+v+  +     ae +   ++ ++ k ++vt + +     l + + +++ c+ l+ +  + v + +   ++  +   + +++l+a++    +++ +d +dl  il+tsGstG+Pkgv  s +  l+  a +     +lre D    v   ++
  MMETSP1174-20130828|12457_1 118 SKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKwVFVTDEGKrggktLPLKRIVDQACEGLTVVekVFVYKRTGGDVDWVEGRDFWMNELAAKQRPYCPCEFMDsEDLMFILFTSGSTGKPKGVSHSTAGyLLYAAMTTKVNFDLREGDIYACVADCGW 320
                  4599************************************************************999988888777647888764323322667777888888887663344555555555555777777888999999988999887259*****************88877524444555555666666665555555555 PP

  == domain 2    score: 65.2 bits;  conditional E-value: 3.1e-21
    TIGR03098 398 vfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvv...esdkeeldkkellkelraelPaymvPakielrealprnanGkiDrkalaa 516
                   f GD  rrDe+Gf ++ gR d+++  sG+R+   e+e++l + +  aea+v+g p++  G  + + v      +++++  k+l++++r ++  + +P  i  +  lp++ +Gki r++l++
  MMETSP1174-20130828|12457_1 508 FFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVIlaaGVESSDAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRK 629
                  578***********************************************************99877663112334455578999********************************99975 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19        52     376     428 ..      42      97 ..      39     107 .. 0.81
   2 !  111.9   0.0   2.6e-35   7.1e-33       1     440 [.     122     625 ..     122     627 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.19
    TIGR01923 376 eavvvpkeDsefGqvPvayikseseiskakltaylkeklaKy...KvPiafeklde 428
                  +a+ ++++D+ +G+   ay++   + +  +  ++ ++ +a +   K+ ++++ +d+
  MMETSP1174-20130828|12457_1  42 QAASIANPDEFWGAQARAYLSWFRDFDVVQQGDFEHGDIAWFlngKLNASYCCIDQ 97 
                  578899**************999999988888888888887766677777777774 PP

  == domain 2    score: 111.9 bits;  conditional E-value: 2.6e-35
    TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae......................................aeevslsasfsldkiatlifTSgstGkpKavvqtfr.nhyasavgsaeklgftesdnWLlsLPlyHvsGls.ilfrallegatlkivdkf....aaeqllesianekvthiSlVptqLkrlleesss.....epeslrkiLLGGsaipapl....ieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasve.ikikvdd.....keghgeilvkg..anlmkgYlek.gelteavee..qGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses..eiska...kltaylkeklaKyKvPiafekldelpkeasgKilRn 440
                  t+ el+ e+ ++A+a+k  +vrkgd+va++++   +l++++la++++g++  ++   ++++ l + ++  k++ ++ ++  ++ +  +++ l+++  +a                                        ++ +    ++ +++  ++fTSgstGkpK+v ++     +  a++++ ++ + e d +  +     + G s i++  l++g+t ++ +      +     + ++++kvt     pt ++ l++   +      + +lr +   G+ i  +      e   +++  i  +y  TEt   v+t  + ++  k++s   p  +++ + +   +     ++  g + +k+  + +m++ ++    +  +  +  +G++  gD  + d++gf  +++R dd++   G  i  +eiE++l ++p  +ea+vv+ + +  G    ay+ + +  e s+a   +l++ +++ ++ +  P  +  +  lpk+ sgKi R+
  MMETSP1174-20130828|12457_1 122 TYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKR-G-GKTLPLKRIVDQACegltvvekvfvykrtggdvdwvegrdfwmnelaakqrpYCPCE---FMDSEDLMFILFTSGSTGKPKGVSHSTAgYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSyIVYGPLVNGTTTVMFESTptypNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDEmvgkyDLSTLRVLGTVGEPINPEAwkwyYEVVGNQQCSIVDTYWQTETGGHVMTPIPGITPLKPGSCCLPFYGIDpVVLDASGneiegNNVEGILCIKStwPGIMRSLYNDhARYMSTYMDiyKGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAgvESSDAvlkNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRR 625
                  799****************************************************************************9995.4.588999999888876777888888888888888888877777777666644333333...6789********************976515678899**************************9678999****9988765542222678999*****************9999987665444445667777777799998775111145677899*********************************99999844443333454445556889999955589*9988874555554432238**********************************************************999999999998877766555541116778899***************************97 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   1.4e-34   3.9e-32      30     526 .]      96     628 ..      91     628 .. 0.77

  Alignments for each domain:
  == domain 1    score: 109.0 bits;  conditional E-value: 1.4e-34
    TIGR02275  30 eeqaakkpdaiaii......cgerkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaa.lliidrahslfdedalarelkakl...stlkvviva...g.k.eveeelksaleslaee....vkleetkadevaffqlsGGstGtpkliPrthddya.ysvrrsveiceltqqtrylcalPaahnyplssPGalGvfyaGGcvvlaad....pspteafpliekhkvtvtalvPpavalwldaae..ksradlsslkllqvGGaklsealarrvpkvlg...cklqqvfGmae.GlvnytrlddsdeiivttqGkPispddevrvvdeegepva.eGeaGrlltrG..PytirGyykaeehnakafda..eGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkdedlkavqlrrflre...aGlaeyklPdrvelidslPltavGkidkkalr 526
                   ++ a+++d++aii      ++ ++++yrel +++ ++a  ++ +G++kgdt+ + +p + ++ ++++a  ++G++  + +       l+   e+++++ ++++d+ +++ ++  l r + + +   + +++v v    g + +  e ++ ++++la++      +e  +++++ f+ ++ GstG pk +  +   y  y+   +     l +   y c+       +  s  + G +  G + v+ ++    p+  + ++l++khkvt     P+a+   +        ++dls+l++l   G  +  ++ +   +v+g   c +   +  +e G    t +     +   +   P+ + d v v+d++g++++ +  +G l ++   P  +r  y  ++   +++ +  +G+++ Gd  +++++G+  ++Gr+ d +n  G +i + eie+ l khp+  +aa+v ++ ++ G   ca+++++     +  + + l++     +  +  Pd +  +  lP+t  Gki ++ lr
  MMETSP1174-20130828|12457_1  96 DQHLAERGDQVAIIweadepGDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKwVFVTDEGKRGGKTLPLKRIVDQACeglTVVEKVFVYkrtGgDvDWVEGRDFWMNELAAKqrpyCPCEFMDSEDLMFILFTSGSTGKPKGVSHSTAGYLlYAAMTTKVNFDLREGDIYACVADCGWI-TGHSYIVYGPLVNGTTTVMFEStptyPNHGRYWDLVQKHKVTQFYTAPTAIRALMRFGDemVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGnqqCSIVDTYWQTEtGGHVMTPIPGITPLKPGSCCLPFYGIDPV-VLDASGNEIEgNNVEGILCIKStwPGIMRSLYNDHARYMSTYMDiyKGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESSDAVLKNLKNavrSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILR 628
                  567788899999985544444679**************************************************98766665666666777778877772556666666656555555555555000555666664222223455677888888877664345678899*********************999999962544444334578899999998765432.333445666677777777644311114455679****************998888766612569**********999999999998877777644477777777666466778999998888888999999999997.778888887614568***999744779*****999999888864449**********************************************************************9987654444444444431115799***********************99998 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   3.6e-28   9.8e-26      45     541 .]     119     628 ..     112     628 .. 0.80

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 3.6e-28
    TIGR03205  45 raitytelealaetaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdlaallpmalkflekglldrlivcedeswgkvgtpkaaipadprivtyadfvkgaakpaewp.....avkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqr...fdvaavlrdieek.ratvfpgvptmwialan..dpslekrdlsslatigsggaplpvevaklferkvglklks...gwgmtetcs.pgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgev.gelrirg..pnvtrgywnraeesaeafvg...drfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklregakp..fsldelraflagklgkhelpvavelvdelprtsvgklsrhelr 541
                  ++ ty el   + + a a+  ag+ k  +va+y+  +pd  + ++ + + ga    +       al  ++  + ++ +  +d       +l    k ++d+   ce  +  +          d   v  +df  +  +  + p      + ++d+ ++ +t g+tg pkg   +h+  t+   +y    +++  +  + +   cv     i   + i+   l +g    + +    +  +  + d+ +k + t f   pt   al    d  + k dls+l ++g+ g p+  e  k +   vg +  s    +  tet     t  p   p kpgs  l + gi  d v ld + + +   +v g l i+   p + r  +n       ++++   + f+ gd    d+dg++++  r  d++ + g  +    ie a+ ++p+  e  v+g p + +g    a+v l  g +     l +l++ ++  +g    p  +  v  lp+t  gk+ r  lr
  MMETSP1174-20130828|12457_1 119 KQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGKRGGKTL--PLKRIVDQ--ACEGLTVVEKVFVYKRTGGDVDWVEGRDFWMNELAAKQRPycpceFMDSEDLMFILFTSGSTGKPKGV--SHS--TAGYLLYAAMTTKVNFDLREGDIYACVADCGWITGHSYIVYGPLVNGTTTVMFEStptYPNHGRYWDLVQKhKVTQFYTAPTAIRALMRfgDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNQQCSivdTYWQTETGGhVMTPIPGITPLKPGSCCLPFYGI--DPVVLDASGNEIEGNNVeGILCIKStwPGIMRSLYNDHARYMSTYMDiykGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYVILAAGVESsdAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILR 628
                  68899**********************************************965555444556799*****99999777777654433222..22444444..35554444444455555556666666666544333333331111157899*****************6..555..6667788888888888877778889**********************988877641226667777786554289************9862266799*********************999888888775542225667888651568889999******98766665..8899**9999999988845667775449*******99888777776544389*************************************************************************875215789**********************************99887 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06   0.00029      23     105 ..     118     200 ..      97     220 .. 0.89
   2 !   48.4   0.0   4.2e-16   1.1e-13     137     502 ..     262     631 ..     245     633 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
    TIGR01734  23 gqeltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvieva 105
                  ++++ty+eL++e+ k+a+a+++  + + + + ++  + +++ v++l+ ++ G  +  v +  + e ++  +e a+++ v+ + 
  MMETSP1174-20130828|12457_1 118 SKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTD 200
                  579*************************************************9998888888888888888888888887765 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 4.2e-16
    TIGR01734 137 kavkeddnyyiiytsGstGkPkGvqishdnLvsftnWiled.fklseekql..lnqapysfDLsvmdlyPsLasGGtLvaldkeit.nnfkeLfeelkklglnvWvstPsfvd..lclldpsfneeklpklteflfcGevLtkktakkLlerfPk..akiyntyGPteatvav.tsvkitkeildeyerlPiGfakpdvnlfivdeeGeklsegekGeivivGdsvskGylnnpekteeaf..feaegkray.rtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakeedfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrkalaeev 502
                  + ++ +d ++i++tsGstGkPkGv  s++  + ++   ++  f l e+ ++  ++   +    s + +y  L+ G t v+ +++ t  n  + ++ ++k+++  + ++P+ +   + + d+ + + +l +l      Ge +  ++ k   e   +   +i++ty  te  + v t +   + +   +  lP   + p     ++d  G+++ eg++ e ++  +s   G +      ++ +    ++ +++y   GD    ++dg   + Gr+D  +   G+ri   +ie+ l k     ea+vv    +d k + + a+v+       ++  l k++k+ + + +  +  P  +   + lp t  Gki r+ l + v
  MMETSP1174-20130828|12457_1 262 EFMDSEDLMFILFTSGSTGKPKGVSHSTAGYLLYAAMTTKVnFDLREGDIYacVADCGWITGHSYI-VYGPLVNGTTTVMFESTPTyPNHGRYWDLVQKHKVTQFYTAPTAIRalMRFGDEMVGKYDLSTLRVLGTVGEPINPEAWKWYYEVVGNqqCSIVDTYWQTETGGHVmTPIPGITPLKPGSCCLPFYGIDP----VVLDASGNEI-EGNNVEGILCIKSTWPGIMRSLYNDHARYmsTYMDIYKGYfFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVVGFP-HDIKGSGVCAYVILAAGVESSDAVL-KNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMRRILRKVV 631
                  56788999************************9999887755888888776115555566666655.6777999999999988877257788899999***********98862245568999999999***************999999987652278*********99876367776677888888899877777....89*******9.5666666666677777777654333332200334556776257**************************************************998.999***********99887777777.************************************9998776 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   3.6e-10     266     459 ..     116     312 ..      90     369 .. 0.82
   2 !   11.6   0.1   2.4e-05    0.0066     671     729 ..     499     557 ..     479     599 .. 0.82
   3 ?   -1.1   0.0      0.16        45     775     819 ..     580     624 ..     562     629 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1.3e-12
    TIGR03443 266 sktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivleka..GeldelvedyiedelelvteipalklqddGsleGgklek.eetdvlasyeklkdkktgvvvGPdsnpt..lsftsGseGiPkGvkGrhfslayyfpWmak..rfglsekdkf 459
                   +++++ty+++ +    +a++++++G+++gd v++y     dl v++l   + Ga+ sv+   +  +     ++ ak + + v ++   G  +  ++ ++++  e  t + ++ + +    +Gg ++  e  d   ++ + k+++       ds+    + ftsGs+G PkGv         y   m+   +f+l e d +
  MMETSP1174-20130828|12457_1 116 GDSKQYTYRELYREVCKVANAMKDAGVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHSVVFAGFSAEALRDRIEYAKSKWVFVTDEGkrGGKTLPLKRIVDQACEGLTVVEKVFVYKR---TGGDVDWvEGRDFWMNELAAKQRPYCPCEFMDSEDLmfILFTSGSTGKPKGVSHSTAGYLLYA-AMTTkvNFDLREGDIY 312
                  56799************************************************************9988888999999998888765556667778999**************99998...7777774145799999999999999888888887651167************74333332232.2332124666666665 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 2.4e-05
    TIGR03443 671 fwlgprdrlyrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvren 729
                   ++ +    +  Gd  r   dG    +Gr dd +   G ri   ei+  l++hP   e 
  MMETSP1174-20130828|12457_1 499 TYMDIYKGYFFLGDGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEA 557
                  5556666666679999999999999*****************************99886 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.16
    TIGR03443 775 glikyrklikdikeylkkklasyavPtvivplkklPlnPnGkvdk 819
                  g+ +  ++ k++k+ ++  +  +a P +i p++ lP    Gk+ +
  MMETSP1174-20130828|12457_1 580 GVESSDAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKIMR 624
                  6666778899********************************965 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00018     0.049      98     126 ..     270     298 ..     225     345 .. 0.83
   2 !   31.8   0.0   4.6e-11   1.3e-08     281     385 ..     512     622 ..     491     623 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00018
    TIGR02372  98 rltfatsGstgtPkPvthswaaLlreaea 126
                   +++ tsGstg Pk v+hs a  l  a+ 
  MMETSP1174-20130828|12457_1 270 MFILFTSGSTGKPKGVSHSTAGYLLYAAM 298
                  57778**************9987766554 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 4.6e-11
    TIGR02372 281 drlrWddervfvieGrldeilqvgGvnvspghvkdvLeaepavealav.....rldGerLkafivvaedadee.eleaeLrataaehLpaparPddlrfgteLPrtaaGkl 385
                  d  r d+++ + i+Gr+d++l  +G  +  +++++ L ++p+ +++av      ++G  + a+++ a++ +++  + ++L++ +   +   a+Pd +   t LP+t+ Gk+
  MMETSP1174-20130828|12457_1 512 DGCRRDEDGFYWITGRVDDVLNCSGHRIGTAEIESALAKHPSCAEAAVvgfphDIKGSGVCAYVILAAGVESSdAVLKNLKNAVRSAIGPFAQPDIIAPVTGLPKTRSGKI 622
                  66778899999************************************94433336888999******999875157889******************************97 PP

>> TIGR03089  TIGR03089: TIGR03089 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.9e-05     0.008      37      81 ..     130     173 ..     123     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.9e-05
    TIGR03089  37 vaKtanlLqdeldlepGsrvaldLPahWqtavillaawsvgvevv 81 
                  v K+an ++d  ++ +G++va+ +P     av +la+ ++g++ +
  MMETSP1174-20130828|12457_1 130 VCKVANAMKDA-GVRKGDTVAIYMPMVPDLAVTMLACTRIGAVHS 173
                  78********9.*****************************8633 PP

>> TIGR03595  Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.7   7.5e+02      21      42 ..      69      90 ..      68     108 .. 0.64
   2 ?    8.0   0.0     0.002      0.55      45      63 ..     133     151 ..     130     155 .. 0.91
   3 ?   -2.7   0.0       4.5   1.2e+03       5      16 ..     516     527 ..     515     528 .. 0.88
   4 ?   -0.1   0.0      0.67   1.8e+02      13      60 ..     539     587 ..     534     588 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.7
    TIGR03595 21 lvkktdfnndeavgrlarkLkk 42
                 +v++ df++ +  + l+ kL+ 
  MMETSP1174-20130828|12457_1 69 VVQQGDFEHGDIAWFLNGKLNA 90
                 5777788888888888877775 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.002
    TIGR03595  45 veeaLrkaGakaGdtVrIg 63 
                  v +a+++aG+++GdtV+I+
  MMETSP1174-20130828|12457_1 133 VANAMKDAGVRKGDTVAIY 151
                  7889*************97 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 4.5
    TIGR03595   5 reedgvfvVeGk 16 
                  r+edg++ ++G+
  MMETSP1174-20130828|12457_1 516 RDEDGFYWITGR 527
                  89*******996 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.67
    TIGR03595  13 VeGkkierlvkktdfnndeavgrlarkLkklGveea.LrkaGakaGdtV 60 
                  +  ++ie  ++k +   + av  + + +k  Gv    +++aG++  d V
  MMETSP1174-20130828|12457_1 539 IGTAEIESALAKHPSCAEAAVVGFPHDIKGSGVCAYvILAAGVESSDAV 587
                  6677899999999999999*************97642567888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.90u 0.19s 00:00:01.09 Elapsed: 00:00:00.82
# Mc/sec: 1065.57
//
Query:       MMETSP1174-20130828|12466_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-08   30.6   0.0    6.3e-08   30.4   0.0    1.1  1  TIGR00296 TIGR00296: uncharacterized protein, PH0010 family


Domain annotation for each model (and alignments):
>> TIGR00296  TIGR00296: uncharacterized protein, PH0010 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.5e-11   6.3e-08     137     192 ..      12      74 ..       6      82 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.5e-11
    TIGR00296 137 gpkrGllLPqvaveygwdkeeflanlilkaGlpp...Dnflteeievyrfegk....ifeeke 192
                  +++ G +LP+v++  gwdkee++  li kaG+ +     f+  +    rf +     +f+e +
  MMETSP1174-20130828|12466_1  12 RVYGGSFLPDVPTRCGWDKEETIDALIRKAGYRGlfdAEFKRAKLVGTRFSTAecsrTFREYQ 74 
                  47889***************************9988445766666667887655556777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|12464_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   38.3   0.4    2.2e-08   32.0   0.3    2.2  1  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3   5.4e-12   2.2e-08      61     185 ..     118     236 ..      87     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 5.4e-12
    TIGR02466  61 erleefaeLekeldkhvakfardleydldakelrle.klWvvilpqggvheaHvHpgs..viSgvyYvqtpen...asaikledprldslmaapkakknakraverfvkvkPqegrvllfeswLrHeVtpn 185
                  + + ef  L+    +++++++ +++ +++ ++ + + ++W      g  h +H H +s  ++Sgv+Y  +p++   +++i + dpr    m +p           + + ++P+eg ++l++swL H V+p 
  MMETSP1174-20130828|12464_1 118 WEIAEFRLLVADFIAATQRYLTQMGAPAQYRRGHPKvDCWCSAHEAGSWHPPHQHVKSteIVSGVFYASIPHGggaNGRIVFSDPRG---MGSP---------FGGAHHINPEEGTLILWPSWLTHTVEPF 236
                  67788999999999999999999999999888776548*****************9885569*********9844456788888885...5555.........35678899*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1250.01
//
Query:       MMETSP1174-20130828|12465_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1283.89
//
Query:       MMETSP1174-20130828|12467_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.9   0.0     0.0023   14.9   0.0    3.2  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0042   13.7   0.0     0.0042   13.7   0.0    2.2  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.017   12.0   0.0    2.2  4  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.2       0.1   1.4e+02     262     285 ..      65      88 ..      59     101 .. 0.84
   2 !   14.9   0.0   1.7e-06    0.0023     181     257 ..     162     272 ..     133     303 .. 0.75
   3 ?    2.2   2.0     0.013        17     403     465 ..     413     475 ..     340     596 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.1
    TIGR01628 262 aeReaelkakfeelkqerkekaqg 285
                  ++R+++lk+ ++++++e+kek+++
  MMETSP1174-20130828|12467_1  65 VDRQEVLKQTRQKREKEKKEKHKV 88 
                  679999999999999999999886 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.7e-06
    TIGR01628 181 lYvKnlddsv.tedklr..elFakfGeitSaivkkdeknrk..........rgfafvnyekaedAkkAveelngkkit.....................laatgkilyVgr 257
                  +Yv  + +s+ +e++lr  e F++fG+i+ ++v +++++ +           + a++ ++++edAk  +++++g  ++                      ++++++ly   
  MMETSP1174-20130828|12467_1 162 VYVIGISPSIaSEETLRrgEYFGQFGKIVKVVVNRNHSGGSgdprnasaslSASAYITFAHKEDAKACIQAVDGFWMDgrnvrasfgttkycnsflrnlSCTNPDCLYLHE 272
                  799999999845788985569************9987653211111112224689****************9999998888889999999999999988888888888755 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.013
    TIGR01628 403 aaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr 465
                    ++ ++++++ +qq ++q+++++ ++    +++ +++ +p+     + +++  ++ r++++r
  MMETSP1174-20130828|12467_1 413 FDNEAQIQQRQRRQQQQQQQQQHPQQHSLGHNSSGGRSPSPQIPSLDTPVEPALEPLRSMQQR 475
                  233444444555555555555555333333333333444444444444444444444444444 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.1e-06    0.0042     513     596 ..     156     248 ..      61     257 .. 0.76
   2 ?  -16.9  11.7         3   4.1e+03      81      96 ..     421     436 ..     408     443 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-06
    TIGR01645 513 ivlrnmvtPkdidetlegeir....eecgkfgvvdrviiyqekqgeeed.....aeilvkifvefsasaevdrakealdGrffgGrkvvaevd 596
                  +v rn+v    i   +  e +    e  g+fg + +v+++ +++g   d     a +    ++ f+   +++ +++a+dG ++ Gr+v+a   
  MMETSP1174-20130828|12467_1 156 VVQRNLVYVIGISPSIASEETlrrgEYFGQFGKIVKVVVNRNHSGGSGDprnasASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFG 248
                  45677776666666554432212336789**************9998888888889999******************************9765 PP

  == domain 2    score: -16.9 bits;  conditional E-value: 3
    TIGR01645  81 qtlahqkqqlenqqrq 96 
                  q    q+qq+++qq+ 
  MMETSP1174-20130828|12467_1 421 QRQRRQQQQQQQQQHP 436
                  3223444444444433 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.7      0.54   7.4e+02      69      94 ..      66      86 ..      52     102 .. 0.44
   2 ?   12.0   0.0   1.2e-05     0.017     219     298 ..     159     250 ..     136     315 .. 0.72
   3 ?   -3.6   0.3      0.62   8.5e+02     322     334 ..     420     432 ..     396     449 .. 0.47
   4 ?   -3.9   0.0      0.77   1.1e+03     348     399 ..     655     707 ..     639     708 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.54
    TIGR01622 69 rreserererekerrredevrrkrke 94
                 +r++ +++ r+k+ ++e++ +    +
  MMETSP1174-20130828|12467_1 66 DRQEVLKQTRQKR-EKEKKEK----H 86
                 3333333333332.1111111....1 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.2e-05
    TIGR01622 219 dlkLYvGnlhfni.tEqeLr..qiFepFGeielvqlqkDpetGr......s...kGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                     +Yv ++  +i +E+ Lr  + F  FG+i +v ++++  +G       s       +i+F + e ak+ ++++ G+ + GR+++ +++  
  MMETSP1174-20130828|12467_1 159 RNLVYVIGISPSIaSEETLRrgEYFGQFGKIVKVVVNRNHSGGSgdprnaSaslSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTT 250
                  455688888866637999995558**************99998522222221123568****************************998653 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.62
    TIGR01622 322 gldlnteereqld 334
                   +  + ++++q +
  MMETSP1174-20130828|12467_1 420 QQRQRRQQQQQQQ 432
                  1111111111111 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 0.77
    TIGR01622 348 laiagtdskavqmaklsrdglvaklipsrelqas.lsetsvlkalaeasfvps 399
                  ++++   ++a  m++l++ g+  k   s   + s  + t v+k  a +++vps
  MMETSP1174-20130828|12467_1 655 AGVNTGYQDAPSMQGLKQAGMQGKEYSSSPSDWSsKPVTAVAKEEAVPAPVPS 707
                  45555566778899999999998877666555444888999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2502.05
//
Query:       MMETSP1174-20130828|12473_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|12474_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1104.80
//
Query:       MMETSP1174-20130828|12475_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1519.57
//
Query:       MMETSP1174-20130828|12478_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|12480_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-05   21.6   0.0      9e-05   20.9   0.0    1.4  1  TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase
      8e-05   20.0   0.0    0.00015   19.1   0.0    1.4  1  TIGR00068 glyox_I: lactoylglutathione lyase


Domain annotation for each model (and alignments):
>> TIGR03081  metmalonyl_epim: methylmalonyl-CoA epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.4e-08     9e-05       1     108 [.      77     179 ..      77     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.4e-08
    TIGR03081   1 kldhvaiavkdleeaaklyrdvlGakvseeeelpeqgvkvvflelgetklellepleedspiakflekkkgeGlhhialevddieaaletlkekgvrlldeepriGah 108
                  k++h+a  + d+e+  ++y+ +lGa++ ++ ++p  g     l lg+++l l++  ++ s  a + +  + + + h+++ev+d + + + lk  +++  ++ +  G++
  MMETSP1174-20130828|12480_1  77 KINHIARICVDAEASRAFYQ-ALGATLLNRPNFPSPG---YWLWLGNAQLHLIQG-AHASEEATHAKGVPTGNVNHLSFEVHDFDGVEASLKRLNMKYKKNLVPEGSG 179
                  79*****************9.9************977...57889********98.56677777888888999**************999999999877666555555 PP

>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.2e-08   0.00015      25     143 ..      85     201 ..      66     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 7.2e-08
    TIGR00068  25 vgdldksldfytevlGmkllrkkdfpeekfslaflgyedessaavieLtynwgtekydlGn...gfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekkk 143
                    d ++s  fy+  lG +ll + +fp+  + l  lg     +   i+ ++  +  ++ +G       h++ +v+d   +   +k++  k+ ++  p   g  +  f+ DPDG+ +e+ + + 
  MMETSP1174-20130828|12480_1  85 CVDAEASRAFYQ-ALGATLLNRPNFPSPGYWLW-LGNA---QLHLIQGAHASEEATHAKGVptgNVNHLSFEVHDFDGVEASLKRLNMKYKKNLVPEGSGVIHQLFLTDPDGHFVEICDCNL 201
                  468999999997.69************999764.4533...33344444444444444444333467***********999************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1365.05
//
Query:       MMETSP1174-20130828|12482_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 1068.79
//
Query:       MMETSP1174-20130828|12484_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 651.15
//
Query:       MMETSP1174-20130828|12481_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.7   0.5    1.1e-05   23.7   0.3    1.8  2  TIGR00855 L12: ribosomal protein L7/L12
  ------ inclusion threshold ------
       0.27    8.2   6.2       0.37    7.8   4.3    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.69   1.4e+03      36      45 ..     246     255 ..     230     285 .. 0.56
   2 !   23.7   0.3   5.2e-09   1.1e-05       5      36 ..     307     338 .]     304     338 .] 0.92

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.69
    TIGR00855  36 Aaaavaaaaa 45 
                     ++a  a+
  MMETSP1174-20130828|12481_1 246 EFRVIAPPAT 255
                  3333333333 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 5.2e-09
    TIGR00855   5 skeeiiealkeltvlelselvkalEekfgvsA 36 
                  + e+i+ +l++lt+le++elvk++Eekfgv A
  MMETSP1174-20130828|12481_1 307 AAEDILVKLESLTLLEAAELVKQIEEKFGVDA 338
                  5799**************************87 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.3   0.00018      0.37      83     135 ..     248     302 ..     237     332 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00018
    TIGR00601  83 kaaePaatpesaptptp..satpasvaekksaaPasaveeessaeeeatatales 135
                   + +P+atp+ ap+ +   s+ pa ++++ +++Pasav e + ++ e+t++  ++
  MMETSP1174-20130828|12481_1 248 RVIAPPATPSEAPALSEavSSEPAPTSQEVVPSPASAVDETTLSPVEETSSQSKA 302
                  5678999**999998877677888888889999***9999887665554443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|12490_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 281.09
//
Query:       MMETSP1174-20130828|12491_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 977.35
//
Query:       MMETSP1174-20130828|12496_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|12494_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 807.46
//
Query:       MMETSP1174-20130828|12498_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|12499_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1147.91
//
Query:       MMETSP1174-20130828|12501_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       405  (0.0987323); expected 82.0 (0.02)
Passed bias filter:                      261  (0.0636275); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|12500_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-112  375.4   0.2   1.4e-112  375.2   0.1    1.0  1  TIGR01429 AMP_deaminase: AMP deaminase
    2.1e-15   54.4   0.0    2.7e-15   54.0   0.0    1.1  1  TIGR01430 aden_deam: adenosine deaminase
    4.5e-06   23.6   0.0    5.9e-06   23.2   0.0    1.1  1  TIGR01431 adm_rel: adenosine deaminase-related growth factor


Domain annotation for each model (and alignments):
>> TIGR01429  AMP_deaminase: AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2   0.1  1.1e-115  1.4e-112     398     611 .]      10     223 ..       2     223 .. 0.99

  Alignments for each domain:
  == domain 1    score: 375.2 bits;  conditional E-value: 1.1e-115
    TIGR01429 398 kfpvpkewtseenppysyylyylyanllalnafrrerGlntfvlrphcGeaGevdhlvsafllaeginhGillrkvpvlqylyyltqigiamsplsnnslfleydknplreylkkGlnvslstddplqfhytkealleeyaiaaqvwklsavdlcelarnsvlqsGfedkvkekwlGvdykeegvegndikktnvadirlafraetlveelall 611
                    p+p+ewt   nppysy+l+y++an+ +ln++r  rG+ntf lrphcGeaG++dhl++++lla++inhGillrk+p lq+lyy++qigiamsplsnn lfl+ydknp+++++ +Glnvslstddpl +hytk++lleey++aaq+wkls+vd ce+arnsvlqsGfe+  k+ ++G++y+  g++gndi+ tnv++irl +r e l +e++l+
  MMETSP1174-20130828|12500_1  10 PLPTPSEWTMPANPPYSYWLFYMHANIASLNHLRAVRGMNTFELRPHCGEAGDTDHLTACYLLAHKINHGILLRKSPALQFLYYMSQIGIAMSPLSNNKLFLDYDKNPFHKFFIRGLNVSLSTDDPLMLHYTKDPLLEEYSVAAQIWKLSSVDQCEIARNSVLQSGFEHAFKQFFIGQNYRSPGADGNDIRVTNVPHIRLQYRSEMLQQEIQLI 223
                  579****************************************************************************************************************************************************************************************************************986 PP

>> TIGR01430  aden_deam: adenosine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0     2e-18   2.7e-15     185     309 ..      51     174 ..      37     185 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 2e-18
    TIGR01430 185 lkltvHagelggaesvkealddlkaeRigHGvraledpellkrlaeekitlevCplSnlklgvvkslaehplkrlleagvkvtlnsDdpavfgs...tlkeeYeiaakdaalteeelkqlaknalega 309
                   +l  H+ge+g +++  ++   l a +i+HG+ + + p+l  +    +i + + plSn kl      ++ p+++++ +g++v+l +Ddp++ +     l eeY++aa+  +l++ +  ++a+n++  +
  MMETSP1174-20130828|12500_1  51 FELRPHCGEAGDTDHLTACY--LLAHKINHGILLRKSPALQFLYYMSQIGIAMSPLSNNKLF--LDYDKNPFHKFFIRGLNVSLSTDDPLMLHYtkdPLLEEYSVAAQIWKLSSVDQCEIARNSVLQS 174
                  57789***********9995..8899*********************************997..788999*******************987763336**************************9776 PP

>> TIGR01431  adm_rel: adenosine deaminase-related growth factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.3e-09   5.9e-06     338     418 ..      62     140 ..      55     174 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 4.3e-09
    TIGR01431 338 denlvdallLnttriGhGfaLvkhPlvlklvkereiavevnPisnqvLkLvadlrnhpvailladnyPvvissddPalwea 418
                  d++ + a  L + +i hG  L k P+++ l    +i + ++P+sn   kL  d+   p   ++  +  v +s+ddP + + 
  MMETSP1174-20130828|12500_1  62 DTDHLTACYLLAHKINHGILLRKSPALQFLYYMSQIGIAMSPLSNN--KLFLDYDKNPFHKFFIRGLNVSLSTDDPLMLHY 140
                  6666778889999********************************9..56669999********************98543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 732.23
//
Query:       MMETSP1174-20130828|12504_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1674.90
//
Query:       MMETSP1174-20130828|12507_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|12508_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.6   0.0      0.037   12.0   0.0    1.3  1  TIGR03917 Frankia_40_dom: Frankia paralogous domain


Domain annotation for each model (and alignments):
>> TIGR03917  Frankia_40_dom: Frankia paralogous domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.9e-06     0.037       2      19 ..      76      93 ..      75      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.9e-06
    TIGR03917  2 evvvrpGadaadliaaLa 19
                 e++v+pG+d+++l+  L 
  MMETSP1174-20130828|12508_1 76 EICVQPGTDPEELMKYLD 93
                 789***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 314.53
//
Query:       MMETSP1174-20130828|12511_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 331.51
//
Query:       MMETSP1174-20130828|12512_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 675.03
//
Query:       MMETSP1174-20130828|12513_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 595.64
//
Query:       MMETSP1174-20130828|12514_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 407.97
//
Query:       MMETSP1174-20130828|12509_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1704.86
//
Query:       MMETSP1174-20130828|12510_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-24   84.7   0.0    1.9e-24   83.9   0.0    1.4  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    9.5e-07   26.3   0.0    2.5e-05   21.6   0.0    2.2  2  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    0.00018   18.9   0.0    0.00029   18.2   0.0    1.3  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00064   17.2   0.1       0.33    8.4   0.0    2.3  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.011   13.5   0.0      0.026   12.4   0.0    1.6  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   2.3e-27   1.9e-24       1     172 [.     247     436 ..     247     440 .. 0.83

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 2.3e-27
    TIGR03162   1 lyLiRHgevevnkgkcY.GqtDv.pLaekge......eqaaalrekledvkfdavvsSplsRcrelAella..........eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvpgGEsvadfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsieveygs 172
                  +yL RHg+   n++ +  G +D+ +L e+++      + ++ + ++       ++++S l+R+ ++A+++              +++ ++  +L E+  G+ +g++y+ei+e+y  e++a  kd   +r p GEs+ d+ qR e +++e+ ++  e +liv+H+G++r++la+ +g+p +q+ + +++  +
  MMETSP1174-20130828|12510_1 247 IYLSRHGQSVYNEHGRIgGDSDLtALGERYAlalkdfAGSRIVIDRTGTICPCRLWTSSLKRTINTARHIDhptvtltnndTWVQMKPKIWSNLDEIYAGACDGMTYAEIKEQYSmEAEARKKDKLGYRYPRGESYLDVIQRLEPLIQEMERH-REPLLIVGHQGILRMILAYYKGIPRDQAPHQAISLHH 436
                  7999************988888533444443111000444445555577777899****************8888888754445566688899*********************************************************999.9*************************99988776655 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     3e-08   2.5e-05       2     107 ..     246     363 ..     245     369 .. 0.72
   2 ?    3.0   0.0     0.014        12     136     196 ..     367     423 ..     358     432 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3e-08
    TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeea....keagk..llkeek.lefdvaytsllkraiktlniv.....ldeldqlwlpvk.ksW.rlnerhyGalqGldkaetaekyGee 107
                  k+ l rhG+s +n++ +  G  d  l++ G+  a      ag+  ++   + + +  ++ts lkr+i+t++ +       + + +w+ +k k W  l+e + Ga +G+  ae++e+y  e
  MMETSP1174-20130828|12510_1 246 KIYLSRHGQSVYNEHGRIGGDSD--LTALGERYAlalkDFAGSriVIDRTGtICPCRLWTSSLKRTINTARHIdhptvTLTNNDTWVQMKpKIWsNLDEIYAGACDGMTYAEIKEQYSME 363
                  77899***************665..566665555222234554113444441556679************976222213356789**99758895699******************9755 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.014
    TIGR01258 136 ryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhlekls 196
                  r ++      P +es  d+++r+ P  +++     ++ + +liv h   lr ++ + +++ 
  MMETSP1174-20130828|12510_1 367 RKKDKLGYRYPRGESYLDVIQRLEPLIQEM----ERHREPLLIVGHQGILRMILAYYKGIP 423
                  44444455789***********99976654....3566789***********999988875 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.5e-07   0.00029       4     169 ..     249     425 ..     246     437 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.5e-07
    TIGR03848   4 lvrhgrstantaktLaGrtpGveLderGr......eqaaalaerladlpiaaivssPlercretveaiaear..........glevavderltevdYGdWtGrelkeLakeeLwkvv..qahpsaavfPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlD 169
                  l rhg+s  n ++++ G ++  +L er +      + ++ + +r +++    + +s l+r+ +t+++i + +          ++++++ ++l e+  G  +G   +e+ ++  ++    ++   + ++P+Ge+  +v +r    ++e++++        +  ++v h  +++++la++ G+  D
  MMETSP1174-20130828|12510_1 249 LSRHGQSVYNEHGRIGGDSDLTALGERYAlalkdfAGSRIVIDRTGTICPCRLWTSSLKRTINTARHIDHPTvtltnndtwvQMKPKIWSNLDEIYAGACDGMTYAEIKEQYSMEAEarKKDKLGYRYPRGESYLDVIQRLEPLIQEMERH-------REPLLIVGHQGILRMILAYYKGIPRD 425
                  6799999999999999988877777765411111133455788999999999****************998888888888888889999******************9998877654114556799***********99999888888765.......4567899*************999766 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0015       1.3       2      27 ..      18      43 ..      17      50 .. 0.93
   2 !    8.4   0.0   0.00041      0.33     147     183 ..     147     183 ..     130     204 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0015
    TIGR01351  2 lvllGpPGsGKGTqakrlaeklglvh 27
                 ++++G PG GK+ +akr a+ l+++h
  MMETSP1174-20130828|12510_1 18 VIMVGLPGRGKSRVAKRTANYLSFFH 43
                 799****************9999877 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00041
    TIGR01351 147 ecddctaellkqReDDteevvkkRlevYkeqteplie 183
                  +c ++ ++ l+++  Dtee  kkRle Y+++ e++ +
  MMETSP1174-20130828|12510_1 147 NCTEMAKSDLNEKPSDTEEDFKKRLEHYERHYESIAS 183
                  78889999999*******************9999875 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.2e-05     0.026       2     106 ..      17     115 ..      16     133 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.2e-05
    TIGR02173   2 iivisGpPGsGkttvakilaeklslklisaGkirelaekkgldlaeskkaeeekeiDkkiDrkikeiaekeknvvlesrlagWllk.eyaDvkiylkaslevraer 106
                  ++++ G PG Gk+ vak  a+ ls+ +    k+ ++ +++  +l    + +   e   + D k+   a++e n+     +  Wl++  +  v +y + s  +r +r
  MMETSP1174-20130828|12510_1  17 VVIMVGLPGRGKSRVAKRTANYLSFFHGLECKVFNVGDRRREKLG---YMN---EKCYDFDDKAAMAARNEFNISCMKEMKEWLVEgPTNRVGVY-DTSNITRKRR 115
                  78899*******************998888888887777765552...222...22233445555566677777777777777776455567777.5555566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1538.99
//
Query:       MMETSP1174-20130828|12516_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|12515_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   11.1   0.8       0.12    9.7   0.6    1.7  1  TIGR02452 TIGR02452: TIGR02452 family protein


Domain annotation for each model (and alignments):
>> TIGR02452  TIGR02452: TIGR02452 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6   2.8e-05      0.12     141     221 ..      82     163 ..      14     176 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.8e-05
    TIGR02452 141 ySpkvPvFrdddGdlleePflvsvitspApnarvvareapeseeeleealknRikkvlklaed..qnvkalvLGAwGcGvFgn 221
                  +S + P  rd +G++l+    ++ +      a   a e + s+e++ + l++ +   +  +ed  + + ++  G wGcGvFg+
  MMETSP1174-20130828|12515_1  82 HSHQDPSARDAEGTVLNGISAIDALDYRGCGAA-AALEGQLSAEHMLRELNKATAGFKGATEDfrHAFSCVATGNWGCGVFGG 163
                  667777777777777777666666666666555.3333444555566667777777777777644778999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 700.35
//
Query:       MMETSP1174-20130828|12519_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 338.58
//
Query:       MMETSP1174-20130828|12523_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|12520_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-14   49.4   0.0    2.7e-13   46.5   0.0    1.9  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-05   23.0   0.0      2e-05   22.0   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.3e-16   2.7e-13       2     214 ..      64     288 ..      63     319 .. 0.71

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.3e-16
    TIGR03903   2 tghkvaikllRedaaeeerlv.aRFrReialCarLshPnivaLlDsGeaed.gllFavFeyveG.....rtl.....revLaad.....G......aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaia 214
                  tg+ va+k ++ +  +++  +     Re+++  +L+hPniv +l+  +  + + +F v ey e      +t+     r+ L+++     G         a+e   Lmlq+L a+   h+   +hRDLk  ni+  ++++     v DFG++    +        +   t  + +  Y  Pe L g     ++ D+++ G i+ e +tG+   +G s  + ++k  s v    P+  a
  MMETSP1174-20130828|12520_1  64 TGELVALKKVKMN--NRMEGFpITALRETNVLLALQHPNIVGVLEMVVGRElDKVFMVMEYFENdlkqvLTIqkerrRNQLKTHlgadlGddqhtqIFMAQEVKCLMLQILSAIEYMHRCWYIHRDLKTSNILFNMKGK---LAVCDFGLARKIGDP-------IRPYTFNVVTLWYRPPELLMGTReYSTAVDMWSIGCIFAEIMTGDALFKGTSQTDQIQKIFSIVGKPTPEKWA 288
                  7777888888877..333333134469*****************9866543379*******97533222344222222233322211121222222467899999****************************998886...4699***97644433.......333344456789*******9965145668***************************99999887777776554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.6e-09     2e-05      94     138 ..     166     211 ..     107     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.6e-09
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                   l+ ++  ++  +H+   +h Dl tsNi+++ ++kl + DfGL++k
  MMETSP1174-20130828|12520_1 166 CLMLQILSAIEYMHRCWYIHRDLKTSNILFNmKGKLAVCDFGLARK 211
                  67778889999*******************6599*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 980.86
//
Query:       MMETSP1174-20130828|12524_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|12522_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 646.75
//
Query:       MMETSP1174-20130828|12530_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 473.34
//
Query:       MMETSP1174-20130828|12531_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|12533_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1174-20130828|12538_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.014   12.6   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-06     0.014      10      39 ..      61      90 ..      50      97 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-06
    TIGR02349 10 kdAseeeikkAYrklakkyHPDrnkgekea 39
                  d +++e+k+ Yr  +k  HPD++ g++ a
  MMETSP1174-20130828|12538_1 61 ADFTAAELKRCYRACSKWTHPDKHGGDDSA 90
                 566899******************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 413.00
//
Query:       MMETSP1174-20130828|12535_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-06   23.9   1.1     0.0007   17.5   0.0    3.5  4  TIGR00405 L26e_arch: ribosomal protein L24
    0.00012   20.2   2.1      0.001   17.3   0.5    2.5  2  TIGR01080 rplX_A_E: ribosomal protein L24
    0.00022   18.9   0.6      0.012   13.3   0.1    2.9  3  TIGR00922 nusG: transcription termination/antitermination factor NusG
  ------ inclusion threshold ------
      0.059   11.7   5.6       0.35    9.2   0.3    3.1  3  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR00405  L26e_arch: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.8e-07    0.0007      14     110 ..     150     247 ..     135     259 .. 0.87
   2 ?    1.2   0.1      0.07        72      86     119 ..     415     448 ..     401     453 .. 0.85
   3 ?    0.8   0.0     0.092        94      82     109 ..     471     498 ..     465     506 .. 0.81
   4 ?   -3.3   0.0       1.7   1.7e+03      85     107 ..     612     634 ..     605     639 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.8e-07
    TIGR00405  14 arllarkarkenl.evysilapeslkGyilveaetkddlreaikglprvrGvvegeidfeeierlltpkkii.esikkGdvveiisGpfkGerakvirv 110
                   +l+ +  r++n+  +ysi+ +  lkG+i +e+  ++ ++++i g+  ++      + ++++  ++t k      +  G+ v +   p+k + akv+ +
  MMETSP1174-20130828|12535_1 150 NKLIYMSSRNDNFsRIYSII-STGLKGHIYIECPDESAVKNLITGIRILQHYKMKMVPVNDLTSVMTCKANSrRPLTAGSWVRLKRAPYKADLAKVVGI 247
                  46777888888873599986.679****************************99*************9976615699*******************977 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.07
    TIGR00405  86 sikkGdvveiisGpfkGerakvirvdeakeevtl 119
                   + +Gd v ++ G  k    kv+ vd  +  v +
  MMETSP1174-20130828|12535_1 415 ALSRGDTVRVLEGDTKNLVGKVMTVDSLQRVVRI 448
                  5789**********************98877766 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.092
    TIGR00405  82 kiiesikkGdvveiisGpfkGerakvir 109
                  ++ +++ +G  v+++ G   Ge   v+ 
  MMETSP1174-20130828|12535_1 471 QLCKHLSEGAHVKVVGGSCAGETGTVVS 498
                  5667899***************988764 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 1.7
    TIGR00405  85 esikkGdvveiisGpfkGerakv 107
                  +si+ G +v i+ G  k     +
  MMETSP1174-20130828|12535_1 612 KSINVGAMVTIVDGIHKKTDNTI 634
                  67899999999999888665555 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.5   9.7e-07     0.001      36      75 ..     410     449 ..     408     459 .. 0.88
   2 ?    1.2   0.0     0.094        97      42      64 ..     476     498 ..     459     505 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 9.7e-07
    TIGR01080  36 gkralpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyve 75 
                  g++a+ + +gd vr+l Gd k   Gkv+ vd  + +++++
  MMETSP1174-20130828|12535_1 410 GRKAVALSRGDTVRVLEGDTKNLVGKVMTVDSLQRVVRIK 449
                  68999**************************887766653 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.094
    TIGR01080  42 vrkgdkvrilrGdfkGkeGkvlk 64 
                  + +g +v+++ G+ +G+ G v++
  MMETSP1174-20130828|12535_1 476 LSEGAHVKVVGGSCAGETGTVVS 498
                  567889**************987 PP

>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.2e-05     0.012     115     154 ..     412     451 ..     392     468 .. 0.89
   2 ?   -1.7   0.0      0.47   4.8e+02     118     141 ..     475     498 ..     463     504 .. 0.82
   3 ?    2.3   0.0     0.028        29     107     143 ..     602     638 ..     558     642 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
    TIGR00922 115 skvefekgeqvrvieGpFanftgtveevdkekkklkvlvs 154
                  ++v    g++vrv+eG  +n+ g+v  vd+ ++ +++ vs
  MMETSP1174-20130828|12535_1 412 KAVALSRGDTVRVLEGDTKNLVGKVMTVDSLQRVVRIKVS 451
                  5678899**************************9999997 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.47
    TIGR00922 118 efekgeqvrvieGpFanftgtvee 141
                  +  +g +v+v+ G  a  tgtv +
  MMETSP1174-20130828|12535_1 475 HLSEGAHVKVVGGSCAGETGTVVS 498
                  567899********9999999865 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.028
    TIGR00922 107 kekkekpkskvefekgeqvrvieGpFanftgtveevd 143
                  ++++    ++++ ++g +v++++G  ++   t++++ 
  MMETSP1174-20130828|12535_1 602 QQAVAMDSQSKSINVGAMVTIVDGIHKKTDNTIKHIF 638
                  33445556778899************99999998875 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00034      0.35       4      32 ..     416     443 ..     413     451 .. 0.83
   2 ?    3.7   0.0     0.017        17       3      30 ..     475     502 ..     473     539 .. 0.86
   3 ?   -1.7   0.0      0.84   8.6e+02       4      30 ..     614     640 ..     611     672 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00034
    TIGR01079   4 ikkgDtVlvisGkdkGkkGkvlkvlpkkd 32 
                  + +gDtV v+ G+ k   Gkv+ v +  +
  MMETSP1174-20130828|12535_1 416 LSRGDTVRVLEGDTKNLVGKVMTVDSL-Q 443
                  578*******************99664.3 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.017
    TIGR01079   3 kikkgDtVlvisGkdkGkkGkvlkvlpk 30 
                  ++ +g +V+v+ G   G++G+v++ + +
  MMETSP1174-20130828|12535_1 475 HLSEGAHVKVVGGSCAGETGTVVSLIDT 502
                  6788999***************998876 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.84
    TIGR01079   4 ikkgDtVlvisGkdkGkkGkvlkvlpk 30 
                  i  g +V+++ G +k    ++ +++++
  MMETSP1174-20130828|12535_1 614 INVGAMVTIVDGIHKKTDNTIKHIFKA 640
                  667778888888888777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.46
# Mc/sec: 1982.71
//
Query:       MMETSP1174-20130828|12540_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-10   36.4   0.0      1e-09   36.3   0.0    1.0  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
    5.6e-06   23.4   0.1    6.1e-06   23.2   0.1    1.0  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
      3e-05   21.5   0.0    3.4e-05   21.3   0.0    1.0  1  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family
  ------ inclusion threshold ------
      0.021   12.1   0.0      0.021   12.0   0.0    1.0  1  TIGR04055 rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
      0.029   11.1   0.1       0.03   11.1   0.0    1.1  1  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.3e-12     1e-09     104     189 ..      13      99 ..       1     103 [. 0.85

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.3e-12
    TIGR04038 104 krnilpelagl.vdalsisLnaqdeetyqkicrpklk.edayeavleFikeakklikevivsavelegvdiekceklaeelgvkfkvR 189
                  + n + +l+++ +da+s++L ++d+ +y+ + +p+++  + ++ v++Fi++a+++  +v v+ v+ + vd +k+e+la+ lgv+ +vR
  MMETSP1174-20130828|12540_1  13 DSNAALHLKNAgIDAVSVALMSSDPIQYETLMEPSTSfVNPHQVVCNFIQSAVDAGLDVEVTGVD-HLVDKKKTENLARLLGVTSRVR 99 
                  467777888877********************998763599***********************9.469**************99988 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   7.5e-09   6.1e-06      90     156 ..       1      76 [.       1      99 [. 0.70

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 7.5e-09
    TIGR02668  90 lttnGilL.....eklakkLkeaGLdRvnvSldtldeekykkit.....srdaleevlegiekAvdvgltPvKlnmv 156
                  lttnGi+      ++ a +Lk+aG+d v v+l + d+ +y+++       ++  + v + i++Avd+gl+ v +  v
  MMETSP1174-20130828|12540_1   1 LTTNGIFSvgnsdSNAALHLKNAGIDAVSVALMSSDPIQYETLMepstsFVNPHQVVCNFIQSAVDAGLD-VEVTGV 76 
                  6999998633333567889***********************975422222345678899*********9.776544 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.1e-08   3.4e-05      98     194 ..       2      99 ..       1     102 [. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 4.1e-08
    TIGR04100  98 ntnGladlihgrkt.aeelkel.vdavsislnapdaesylevtrpkfge.ksfdallkfakdckklvkevvlsvvdviseeeiekskklaeelgiklrvr 194
                   tnG+  + ++ +  a +lk++ +davs++l  +d  +y  ++ p+ +  + ++ + +f +    +  +v ++ vd + ++  +k+++la  lg++ rvr
  MMETSP1174-20130828|12540_1   2 TTNGIFSVGNSDSNaALHLKNAgIDAVSVALMSSDPIQYETLMEPSTSFvNPHQVVCNFIQSAVDAGLDVEVTGVDHLVDK--KKTENLARLLGVTSRVR 99 
                  58888888776654145676545*********************987654999***********************99876..588899999***99999 PP

>> TIGR04055  rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05     0.021      87     144 ..      14      75 ..       1     100 [. 0.66

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.6e-05
    TIGR04055  87 eevakklkeaGvqrvgisldsldaekhdkfrklegafeeaveg....ienlreaglefqint 144
                  +++a +lk+aG+ +v+++l s+d+ +++++ + +++f +  +     i+   +agl+  +  
  MMETSP1174-20130828|12540_1  14 SNAALHLKNAGIDAVSVALMSSDPIQYETLMEPSTSFVNPHQVvcnfIQSAVDAGLDVEVTG 75 
                  467889**************************999997655440011556666666665532 PP

>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.6e-05      0.03      96     162 ..       1      75 [.       1     101 [. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.6e-05
    TIGR02666  96 lttNgllL.....erkakaLkeaGlkrvnvSLDsLdaekfkkitrrsgkl....ekvlegieaaleaglkkvKlNt 162
                  lttNg+       ++ a +Lk+aG++ v v L s d+ +++++ + s+++    + v++ i+ a +agl  v +  
  MMETSP1174-20130828|12540_1   1 LTTNGIFSvgnsdSNAALHLKNAGIDAVSVALMSSDPIQYETLMEPSTSFvnphQVVCNFIQSAVDAGLD-VEVTG 75 
                  6888875322222456779**********************99887765422224578889999999998.76654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1174-20130828|12543_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1377.09
//
Query:       MMETSP1174-20130828|12544_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1174-20130828|12542_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1078.87
//
Query:       MMETSP1174-20130828|12545_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1174-20130828|12548_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1174-20130828|12550_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|12553_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:01.12
# Mc/sec: 83.67
//
Query:       MMETSP1174-20130828|12552_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.48
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|12554_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 523.96
//
Query:       MMETSP1174-20130828|12551_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1239.55
//
Query:       MMETSP1174-20130828|12555_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   13.9   0.4      0.011   13.5   0.2    1.3  1  TIGR03086 TIGR03086: TIGR03086 family protein


Domain annotation for each model (and alignments):
>> TIGR03086  TIGR03086: TIGR03086 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   2.7e-06     0.011      62     101 ..       3      42 ..       1      59 [. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-06
    TIGR03086  62 edevlgddpeaalaaaadaaraawadpaaleatvslpgge 101
                  ++++l +++ +  +aa+ ++++awa p++l+  v++p+  
  MMETSP1174-20130828|12555_1   3 SEDWLSEKITQDADAARVRVAEAWAVPEGLKKIVKFPELF 42 
                  578999999***************************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:01.00
# Mc/sec: 117.47
//
Query:       MMETSP1174-20130828|12558_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.79
# Mc/sec: 145.36
//
Query:       MMETSP1174-20130828|12559_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 168.65
//
Query:       MMETSP1174-20130828|12560_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 239.01
//
Query:       MMETSP1174-20130828|12557_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1357.92
//
Query:       MMETSP1174-20130828|12565_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 187.56
//
Query:       MMETSP1174-20130828|12563_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 239.98
//
Query:       MMETSP1174-20130828|12567_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.74
# Mc/sec: 272.90
//
Query:       MMETSP1174-20130828|12568_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.81
# Mc/sec: 850.60
//
Query:       MMETSP1174-20130828|12572_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 200.85
//
Query:       MMETSP1174-20130828|12574_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1046.91
//
Query:       MMETSP1174-20130828|12578_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 799.27
//
Query:       MMETSP1174-20130828|12580_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 306.95
//
Query:       MMETSP1174-20130828|12583_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 406.39
//
Query:       MMETSP1174-20130828|12579_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-89  297.9   0.0    1.5e-89  297.6   0.0    1.1  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    1.5e-23   81.6   0.1      8e-21   72.7   0.0    2.1  2  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    3.2e-08   30.5   0.1    1.7e-05   21.5   0.0    2.7  3  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
  ------ inclusion threshold ------
      0.013   12.4   0.0      0.018   12.0   0.0    1.1  1  TIGR02993 ectoine_eutD: ectoine utilization protein EutD


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.0   1.5e-92   1.5e-89       2     246 ..     148     393 ..     147     394 .. 0.99

  Alignments for each domain:
  == domain 1    score: 297.6 bits;  conditional E-value: 1.5e-92
    TIGR00500   2 slkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipd.kkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeepeilnyakketnvrlkeGmviaiEPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLte 246
                   +k++e+ie++r ag++++evl+ + r vkpG+st+++dk+a+df+ +kgA++++++y+gfp+svC+SvNev++HGipd   +l++gD+vniDv+++++Gy+gD +++++vg+v++  + ll++t ++  ka++ +++g   k+i+ +ie+++ + gfs+ ++++GHGiG  +H+ p+il+y +ke n ++++G +++iEPm+ne+t ++ +++d+Wt +t d+  saqfEht+++te+gv+ Lt+
  MMETSP1174-20130828|12579_1 148 DVKTEEDIEGMRVAGRIAREVLDAAGRLVKPGISTDDVDKLAHDFTVSKGAYPSPLNYHGFPKSVCTSVNEVICHGIPDtTSLLEEGDMVNIDVTIYFNGYHGDCSEMFTVGEVDQAGKELLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQFGFSTTRQFCGHGIGSIFHTTPNILHYRNKEPNGVMQPGHTFTIEPMINEGTDKVLFWPDKWTATTADGGRSAQFEHTLLMTEDGVVPLTA 393
                  5899***************************************************************************999****************************************************************************************************************************************************************9996 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   7.8e-24     8e-21       4     198 ..     154     357 ..     148     363 .. 0.89
   2 !    7.1   0.0   0.00071      0.73     271     290 ..     369     388 ..     361     393 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 7.8e-24
    TIGR00501   4 vaeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPani..sinevaahftpkagdetvlkdedvvkldlGahvdGyiadta..itv.dlddqykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvkerd.ttkleeGevlaiepfatdGvGlv 198
                   +e +  aG+i++ v ++a   ++pG+   +v ++  + ++ +Ga P      +fP ++  s+nev  h  p++   + l+++d+v +d+ +  +Gy  d +  +tv ++d+  kell+ + d+  +a++  +++    +iG +ie+ + ++g+   + ++Gh++   + h+ + i  +++++ +  ++ G+ + iep+  +G  +v
  MMETSP1174-20130828|12579_1 154 DIEGMRVAGRIAREVLDAAGRLVKPGISTDDVDKLAHDFTVSKGAYPsplnyhGFPKSVctSVNEVICHGIPDT--TSLLEEGDMVNIDVTIYFNGYHGDCSemFTVgEVDQAGKELLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQFGFSTTRQFCGHGIGS-IFHTTPNILHYRNKEpNGVMQPGHTFTIEPMINEGTDKV 357
                  45556679**************************************9999999***887669*******99976..5899******************9975448885577779***************************************************87.67888888888776527789************9998877 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00071
    TIGR00501 271 ksgslvaqfehtilveedga 290
                   +g+  aqfeht+l++edg+
  MMETSP1174-20130828|12579_1 369 ADGGRSAQFEHTLLMTEDGV 388
                  679999***********997 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0011       1.2     144     177 ..     164     193 ..     147     199 .. 0.71
   2 !   21.5   0.0   1.7e-08   1.7e-05      79     176 ..     211     303 ..     204     316 .. 0.74
   3 ?   -1.2   0.0      0.13   1.3e+02     311     334 ..     370     393 ..     367     408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0011
    TIGR00495 144 aaslaleaalrlvkPGkkntevteviekvaasyd 177
                   a+  l+aa rlvkPG    +v    +k+a+ + 
  MMETSP1174-20130828|12579_1 164 IAREVLDAAGRLVKPGISTDDV----DKLAHDFT 193
                  47889***********986655....66666665 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1.7e-08
    TIGR00495  79 PtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviekvaasy 176
                    + svn+v++h  P    ++ l+eGd+v id+ ++ +G+    ++ + +g e + +G++   ++ +  +   a+    PG+  +++  +ie   +++
  MMETSP1174-20130828|12579_1 211 SVCTSVNEVICHGIP--DTTSLLEEGDMVNIDVTIYFNGYHGDCSEMFTVG-EVDQAGKE--LLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQF 303
                  3578********988..45699*************************9998.66666764..444444455556677777777777777766655555 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.13
    TIGR00495 311 eGeivaqfkftvlllpnGsirlts 334
                  +G+  aqf+ t+l++++G   lt 
  MMETSP1174-20130828|12579_1 370 DGGRSAQFEHTLLMTEDGVVPLTA 393
                  78999*************887775 PP

>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05     0.018     153     323 ..     144     317 ..     137     349 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.8e-05
    TIGR02993 153 nwqravksetelkymrkaakivekmhqrilervepgmrkcdlvadiydagirgvdg.fggdypaivpllpsgadasaphltwddkp.lkvgegtffeiagvykryhvplsrtvflgkptqafldaekavlegleaglevakpgntcediakaffavlkkygiekd.srtgypig 323
                   wq  vk+e++++ mr+a++i  ++ +     v+pg+   d+    +d  + + +     +y      + + ++    h   d +  l+ g+   ++++  ++ yh   s    +g   qa  +  + + +     ++ ++pg   +di   + + + ++g     + +g+ ig
  MMETSP1174-20130828|12579_1 144 PWQVDVKTEEDIEGMRVAGRIAREVLDAAGRLVKPGISTDDVDKLAHDFTVSKGAYpSPLNYHGFPKSVCTSVNEVICHGIPDTTSlLEEGDMVNIDVTIYFNGYHGDCSEMFTVGEVDQAGKELLQVTYDSWVKAMDFCEPGRPYKDIGGIIEDYVSQFGFSTTrQFCGHGIG 317
                  6****************************9******998776555555555433322455777777777788888888877776551567777777888888999999999999999999888888888888888888888888888888888888888887654144777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 982.85
//
Query:       MMETSP1174-20130828|12590_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 266.04
//
Query:       MMETSP1174-20130828|12591_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 412.89
//
Query:       MMETSP1174-20130828|12585_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   15.2   0.0     0.0066   14.5   0.0    1.5  1  TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin)


Domain annotation for each model (and alignments):
>> TIGR02691  arsC_pI258_fam: arsenate reductase (thioredoxin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-06    0.0066      39      77 ..      31      70 ..       1     105 [. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-06
    TIGR02691 39 lnpkavkamkev.gidisdqtsdlidedilnkadlvvtlc 77
                  np+a  +m+e+ gid s+++s+l+++  +n+a  ++ + 
  MMETSP1174-20130828|12585_1 31 ANPTAQLVMRETfGIDTSQHRSQLLERGAVNSAYAIICVT 70
                 599******9965*******************98887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 511.96
//
Query:       MMETSP1174-20130828|12592_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1061.65
//
Query:       MMETSP1174-20130828|12577_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1201.65
//
Query:       MMETSP1174-20130828|12584_1  [L=1739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.17s 00:00:01.07 Elapsed: 00:00:00.67
# Mc/sec: 3425.81
//
Query:       MMETSP1174-20130828|12593_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|12595_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 518.85
//
Query:       MMETSP1174-20130828|12598_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-18   64.7   0.0    2.4e-08   32.0   0.0    2.3  2  TIGR00229 sensory_box: PAS domain S-box protein
    2.3e-17   60.5   0.0    1.2e-08   31.7   0.0    2.1  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.7e-11   7.6e-08      22     112 ..     112     202 ..     103     213 .. 0.85
   2 !   32.0   0.0   1.2e-11   2.4e-08      20     112 ..     261     353 ..     259     365 .. 0.95

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 3.7e-11
    TIGR00229  22 deeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                  d+e ni+ v++af +++GY a+ ++Grn + l  ++ ++   + i+ +l+ e+++  + +++ ++dG+++     ++p+r+ +g+  ++ gi
  MMETSP1174-20130828|12598_1 112 DHERNIITVSKAFVDLTGYDAKYALGRNCRFLQGPNTKKSEIRAISDALKNEHSVSVKITNY-KADGTVFENTFLLTPLRNmEGKTIFFAGI 202
                  8899***************************7766666666668888888898998888988.*****************966666666554 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 1.2e-11
    TIGR00229  20 vvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                  ++d + +i+  ++ f +i+GYs +e +Grn + l  +  ++    +i+ +l+ + +++ + +++ +k G+e+     + p+ d +g+ ++++gi
  MMETSP1174-20130828|12598_1 261 MADPDAIIVGCSPHFLDITGYSTDETLGRNCRFLQGPKTSQIDVNKIRDALRTQTQVYVSLVNY-TKEGKEFINTFFLLPLIDlKGKNRYYIGI 353
                  578999**********************************************888********9.******************99999999987 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0     6e-12   1.2e-08      21     147 ..     112     232 ..     106     265 .. 0.83
   2 !   27.1   0.0   1.5e-10   3.2e-07      20     112 ..     262     354 ..     250     372 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 6e-12
    TIGR02938  21 dlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqkllieavvdaaPvalvlld 147
                  d   ni+ + +af ++tGy  +  +G+n   l   +t +   +a+ ++l +++  + k+ n + dg+ +   + ++P+ n  G+t++f G+    +   +le++  +q+l    v++a P   + ld
  MMETSP1174-20130828|12598_1 112 DHERNIITVSKAFVDLTGYDAKYALGRNCRFLQGPNTKKSEIRAISDALKNEHSVSVKITNYKADGTVFENTFLLTPLRNMEGKTIFFAGIQSCPS---HLEHERMQQTL---GVIKALPEHQAYLD 232
                  7789**************************************************************************************975433...35555555554...45555555555555 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.5e-10
    TIGR02938  20 tdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmh 112
                  +d  a i+     f +itGy+++e +G+n   l   +t +    ++ ++l  +      l+n  k+g+ ++  + + P+++  G+  +++G+ 
  MMETSP1174-20130828|12598_1 262 ADPDAIIVGCSPHFLDITGYSTDETLGRNCRFLQGPKTSQIDVNKIRDALRTQTQVYVSLVNYTKEGKEFINTFFLLPLIDLKGKNRYYIGIQ 354
                  5667778888889****************************9*************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1500.51
//
Query:       MMETSP1174-20130828|12597_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-07   27.0   2.2      2e-06   24.9   0.2    1.9  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    7.6e-07   26.4   4.0    1.1e-06   25.8   2.7    1.2  1  TIGR00899 2A0120: sugar efflux transporter
    0.00017   18.5   5.7    0.00019   18.3   4.0    1.1  1  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   1.5e-09     2e-06     187     354 ..      19     186 ..       6     196 .. 0.79
   2 ?    2.1   0.1     0.013        17      51      80 ..     200     230 ..     192     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.5e-09
    TIGR00883 187 RlkleEtpvfekekekkkkearkkripl...aevltkkrkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsalless.sillvlllllllalivamytgvmaallaelfptevRyt 354
                  Rl  +Et+  ++e +k++ke r + +++     ++t k+    +v g  +  +++  ++  + + + k   +  ls +++ ++ +++ i+++ v  l   +s+riGr + + ll ++ + +   ++++l +s+ + +++++l ++ +++++ ++ +++++l +    + R++
  MMETSP1174-20130828|12597_1  19 RLCEKETSCLSTEDDKAEKEWRLEVASMsgfGGLITVKS-VPYIVFGADLLIALASGMTIRFFPLFFKDDCS--LSPAQVQTIYAVTPIVMAAVSTLGTHVSERIGRVQAVGLLRISGLTCF-ASMVVLYHSGaPSWAIVVLYVARTALMNSTYPIEESILMDYVEKSERAR 186
                  666678888888888888777644333311034455444.6677888888889999**************76..9**********************************8888887776666.6777777777699999999999999999999999999988777777665 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.013
    TIGR00883  51 Gaivf.GalgDrlGRkktLvvtlllMgigtv 80 
                  G++++ G+l D  G   t++vt+l+ +++t+
  MMETSP1174-20130828|12597_1 200 GSALLgGYLSDANGYTFTFIVTILMQSTATL 230
                  6666625789***************999987 PP

>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   2.7     8e-10   1.1e-06       7     163 ..      67     223 ..      61     246 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 8e-10
    TIGR00899   7 fligiagalqlPtLsvfLseevkarpaavGlfytlsaivgiavsqllakasDkqgdrk..kLi.laclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavmflaaav 163
                   li +a ++ +    +f +++  ++pa v  +y++++iv  avs l ++ s++ g  +  +L+ +  l   + + vl+        ++vl v  ++l ++  P   ++  ++++++ r        l    s +w  + +l + L++  +++  f++  +
  MMETSP1174-20130828|12597_1  67 LLIALASGMTIRFFPLFFKDDCSLSPAQVQTIYAVTPIVMAAVSTLGTHVSERIGRVQavGLLrISGLTCFASMVVLYHSGAPSWAIVVLYVARTALMNSTYPIEESILMDYVEKSERA---RWKSLESVSSFGWCGSALLGGYLSDANGYTFTFIVTIL 223
                  58999***************************************999999999876541155524445555677899999999999999***************************999...56778999***************998777766655433 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   4.0   1.4e-07   0.00019     218     397 ..      60     234 ..      28     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-07
    TIGR00893 218 iglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvala.ffgkglaailwavisdvlskeiagltgGl..inllGnlagivgPivigaiaattGsfagallvvaalaligalsvll 397
                  ++++ +  l++++ ++ + +fpl+ k++  ls+ ++  + +++ iv +    lg  +s  + +  + + l r+ ++++  ++s+++   +  a+++a+++l++    + +    i  ++  d+++k + +   +l  ++++G+ ++   +++ g++ ++ G  ++ ++v   +   ++l +l 
  MMETSP1174-20130828|12597_1  60 YIVFGADLLIALASGMTIRFFPLFFKDDCSLSPAQVQTIYAVTPIVMAAVSTLGTHVSERIGRV-QAVGLLRISGLTC--FASMVVLYHS-GAPSWAIVVLYVARtALMNSTYPIEESILMDYVEKSERARWKSLesVSSFGWCGS---ALLGGYLSDANG-YTFTFIVTILMQSTATLGYLS 234
                  799*************************************999999998899999999999988.5999999999999..4444444443.357777666655440444444889999*****99998886555422777888776...567899999998.666666665555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 702.07
//
Query:       MMETSP1174-20130828|12599_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.50
# Mc/sec: 910.72
//
Query:       MMETSP1174-20130828|12600_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1174-20130828|12601_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.73
# Mc/sec: 213.35
//
Query:       MMETSP1174-20130828|12603_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|12604_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 746.42
//
Query:       MMETSP1174-20130828|12607_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 332.25
//
Query:       MMETSP1174-20130828|12602_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1164.21
//
Query:       MMETSP1174-20130828|12605_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 784.17
//
Query:       MMETSP1174-20130828|12608_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-22   76.7   0.0    3.4e-22   76.4   0.0    1.1  1  TIGR02350 prok_dnaK: chaperone protein DnaK


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   8.3e-26   3.4e-22     215     352 ..      63     214 ..       9     220 .. 0.74

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 8.3e-26
    TIGR02350 215 dtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssale...teinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdak..........lsaseidevilvGGstriPavqelvkelv.gkep 352
                      G d + e ++d+la +f ++ g+dL++d+ +l rl+e+ae   +eL s+++   ++i lp+itada+gpkhl++k++ra++ ++v+  ++ + + + +al+ a+           s  ++d +++vGG +r  +v  ++++l+ g+++
  MMETSP1174-20130828|12608_1  63 SRSSGCDFMHEMLVDHLALQFARRWGLDLRTDSLSLERLHESAESVAKELGSSSSsgpSSIYLPYITADADGPKHLDVKISRAEYSSIVDAALNDVGAVLVRALEAAGgaarsesgggASCGDVDALLVVGGGARSSVVVSMLERLLvGQNS 214
                  344577778999*************************************96665523369*********************************999999999998875222221112245679****************9999986515554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1220.90
//
Query:       MMETSP1174-20130828|12609_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|12610_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-30  103.2   1.4    1.7e-20   71.2   0.3    2.0  2  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.5e-13   6.2e-10      55      95 ..       2      44 ..       1      45 [. 0.89
   2 !   71.2   0.3   4.2e-24   1.7e-20     174     276 ..      39     148 ..      39     157 .. 0.94

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.5e-13
    TIGR00116 55 rvAaeGvvllkvdnd..kavlveinsetDFvAknegfkelank 95
                 r A+eGvv++++++    +v+vein+etDFvAk  +fkela+ 
  MMETSP1174-20130828|12610_1  2 RAANEGVVASYIHTGskLGVMVEINCETDFVAKGPKFKELAKA 44
                 789*****9988765448**********************986 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 4.2e-24
    TIGR00116 174 eelakdlAmHvAAv.kPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkktvkqllke......knakvtefvrfevGeGi 276
                  +elak +Am +AA  + +f++ +d+s+e  + ere e + + l gkP++i  k+veGrl k ++   L+eq ++ d+++tv +l+k       +n+++++f rf++Ge  
  MMETSP1174-20130828|12610_1  39 KELAKAVAMQIAACpSVEFVRDEDISEEAKQAEREAEMKSEDLAGKPDDIKVKMVEGRLGKIMKTRVLMEQPYIRDPSQTVDDLIKGyittigENIQISRFSRFNLGETQ 148
                  589*********984679*****************************************************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 599.61
//
Query:       MMETSP1174-20130828|12611_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1048.15
//
Query:       MMETSP1174-20130828|12616_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|12612_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.63
# Mc/sec: 949.06
//
Query:       MMETSP1174-20130828|12617_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.54
# Mc/sec: 261.53
//
Query:       MMETSP1174-20130828|12614_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 868.35
//
Query:       MMETSP1174-20130828|12621_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|12618_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1400.55
//
Query:       MMETSP1174-20130828|12622_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1238.67
//
Query:       MMETSP1174-20130828|12623_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 956.92
//
Query:       MMETSP1174-20130828|12620_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   64.8   0.0    2.6e-18   63.8   0.0    1.4  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00031   18.2   0.1      0.065   10.6   0.0    2.3  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0015   14.8   0.0     0.0019   14.4   0.0    1.2  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
  ------ inclusion threshold ------
       0.01   13.0   0.0      0.018   12.1   0.0    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   2.5e-21   2.6e-18      14     198 ..      18     215 ..       7     231 .. 0.77

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 2.5e-21
    TIGR02928  14 pd.rivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkele....eaaeekdvr.vstvyvnCqe...lsteyqvlvelvnql..aeseeevpetGlstkevfeelvkele....eredsliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigisndlkfleeldervkssls.eeeivFp 198
                   d r+ + + q +el++ l+++l+ +r   vl++G  G+GKt++ ++vl+e+     ++a++ d+  ++ ++++  +   +    ++ ++ ++q+  ++ e      G  t+e++  +v++      +++  l++vLD ++ + ++ ++++Ly+L+ + +  d   +++ ++gi +d+ ++e l++rv+s+l   +ei+F 
  MMETSP1174-20130828|12620_1  18 YDpRLWGTEAQTNELRTTLQDALTQHRNATVLLFGSRGSGKTSTLRHVLQEITpsqtSSASSADSPaFRPIWLDALDfgnDLRASKAWAKTARQIkkRDAEMAGLVPGANTSEYYASFVEKAIrlgrASGSPLLFVLDHLELFAQEPRQSFLYSLLDLASRPD---VQLVIVGIARDFALREILEKRVRSRLAsAKEIHFF 215
                  44589999******************************************99622223444555547777777765511055566778888899944444444456799******99998653122367778**************************44444...669***********************625899984 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   6.3e-05     0.065      22      68 ..      29      75 ..      24      93 .. 0.84
   2 !    5.1   0.0    0.0029         3      92     169 ..     150     227 ..     129     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.3e-05
    TIGR03420 22 naellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeagks 68
                  +el ++l+ +++++++ ++ l+G+ gsGk+  L+ + ++++  + s
  MMETSP1174-20130828|12620_1 29 TNELRTTLQDALTQHRNATVLLFGSRGSGKTSTLRHVLQEITPSQTS 75
                 567778899999*******************9999988888766655 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0029
    TIGR03420  92 elvalDdvealagereweealfdlynrlresgrkllvageaaPaelklrl.pDLrtRlawglvfqlkplsdeeklaaLq 169
                   l +lD++e +a+e+  +  l++l+  +   + +l++ g a   +l+  l +  r+Rla++  ++  + s ++ +++L+
  MMETSP1174-20130828|12620_1 150 LLFVLDHLELFAQEP-RQSFLYSLLDLASRPDVQLVIVGIARDFALREILeKRVRSRLASAKEIHFFKRSSADAMEMLR 227
                  5789**********9.9********99999999****999988888755515699****99999999999999888887 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-06    0.0019     358     393 ..      42      77 ..      22     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-06
    TIGR03925 358 faeephllvlGdsesGktallraiaeevvernspee 393
                   +++  +l +G+ +sGkt+ lr++++e++ +++++ 
  MMETSP1174-20130828|12620_1  42 QHRNATVLLFGSRGSGKTSTLRHVLQEITPSQTSSA 77 
                  456678899*******************98776655 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05     0.018      22      54 ..      32      63 ..      20      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
    TIGR02397 22 vvktLknaikknkiahayLfsGprGvGKTsiAr 54
                 + +tL+ a+ +++ a++ Lf G+rG GKTs+ r
  MMETSP1174-20130828|12620_1 32 LRTTLQDALTQHRNATVLLF-GSRGSGKTSTLR 63
                 5689*********9887665.*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 1059.91
//
Query:       MMETSP1174-20130828|12624_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1407.88
//
Query:       MMETSP1174-20130828|12625_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   17.5   0.0    0.00018   17.3   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.3e-08   0.00018     140     187 ..       8      55 ..       2     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.3e-08
    TIGR03903 140 eatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  e ++tr +  lG+  Y aPe LRg p     D +++G+++ e L G++
  MMETSP1174-20130828|12625_1   8 EFEATRLGTKLGTTDYMAPEMLRGVPYGKGIDWWSFGIMMYELLIGRP 55 
                  567899999*************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 748.89
//
Query:       MMETSP1174-20130828|12627_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 623.28
//
Query:       MMETSP1174-20130828|12628_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-132  437.8   0.1   5.6e-132  437.6   0.1    1.0  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   1.2e-101  337.6   0.1   1.5e-101  337.4   0.1    1.0  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    9.1e-43  144.4   2.1    4.5e-35  119.2   0.1    2.1  2  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family


Domain annotation for each model (and alignments):
>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.6   0.1  4.1e-135  5.6e-132       1     334 [.      21     371 ..      21     372 .. 0.95

  Alignments for each domain:
  == domain 1    score: 437.6 bits;  conditional E-value: 4.1e-135
    TIGR00512   1 kaikyseekleildqrlLPaeeeyievktvedvaeaikklkVRGAPaigivaayglalaakek.eaeekeelkkkleeklellkesRPtAvnlswalerlkealee.....aatekelkealleeaeeileedleanrkigelgaellkkkaakk...........ekltvLthCNtGslAtagyGtAlgvirsakekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRdeeEvtkvsgvriaakgievynpaFDvtPaelitaiitekGvve 334
                  ++++ys+++leildq+l+P+e++y+ v ++ed + +i++++VRGAP+i+iva+++la++a++   +++  e++++l +k+++l++sRPtAvnl++a + lk+++++      at +++ +++++eae++l+ d+++nr+ig++ga+ + +  +++           +kl++Lt+CNtGslAtagyGtAlgvir+++e+g l hvya+EtRP+nqG+rLta+E+v+e++p tli+Ds+++al++ + vd v+ GaDR+++nGDtaNKiGty+la++ak+hgvpf++aap +tiDl+l++G+ei+iEeR ++E+++++gv ia++ ++v+np+FDvtPa+li++iite Gvv+
  MMETSP1174-20130828|12628_1  21 QSLRYSRGSLEILDQLLVPTESTYVPVLNAEDGWGVIRRMQVRGAPLIAIVASLALAVEASKIkGISSGGEAASFLLDKMTYLRTSRPTAVNLFTATDLLKQVVTNaatatGATADSVFASYIKEAESMLAADVADNRSIGKHGADEFLTVFRDTlpenqrkpddeTKLKILTICNTGSLATAGYGTALGVIRALAERGSLDHVYACETRPYNQGSRLTAFEIVEEQLPGTLICDSAVSALMAIKGVDGVVAGADRVCRNGDTANKIGTYNLAIAAKYHGVPFYIAAPRTTIDLALSTGAEIQIEERGPDELRSIRGVPIAPPTVDVWNPVFDVTPAALISGIITEFGVVK 371
                  689*********************************************************998567889999****************************99998878777788899999************************98665444332333455567889**************************************************************************************************************************************************************************************97 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.4   0.1  1.1e-104  1.5e-101       4     303 .]      50     372 ..      47     372 .. 0.94

  Alignments for each domain:
  == domain 1    score: 337.4 bits;  conditional E-value: 1.1e-104
    TIGR00524   4 iedvaeaikslevRGApaigvaaalglalaakkiktvnv.eefkeklekaadvllssRPtAvnLsnalervlkalks.....sedveevkeslleeaeelieedletnrkiGengakl.................ikdgdtvlthCnaGslatsdygtAlgvirsawedgkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetGediiiEERdpeEvavvegvriaplevkvynpAFDitPaelidaiitEkGvitp 303
                   ed   +i+ ++vRGAp i+++a+l+la +a kik +    e  + l +++ +l+ sRPtAvnL+ a + +++++++     +   + v +s ++eae +   d++ nr iG++ga+                   + + ++lt+Cn+Gslat++ygtAlgvir++ e g   +v+a+EtRP++qGsrLta+e+vee+++ tli Dsav+ l+  + +d v+ GADr+ rngd+anKiGt++la++ak++++pF++aAp +t+d + +tG++i+iEER p E++ + gv iap  v+v+np FD+tPa li++iitE Gv++p
  MMETSP1174-20130828|12628_1  50 AEDGWGVIRRMQVRGAPLIAIVASLALAVEASKIKGISSgGEAASFLLDKMTYLRTSRPTAVNLFTATDLLKQVVTNaatatGATADSVFASYIKEAESMLAADVADNRSIGKHGADEfltvfrdtlpenqrkpdDETKLKILTICNTGSLATAGYGTALGVIRALAERGSLDHVYACETRPYNQGSRLTAFEIVEEQLPGTLICDSAVSALMAIKGVDGVVAGADRVCRNGDTANKIGTYNLAIAAKYHGVPFYIAAPRTTIDLALSTGAEIQIEERGPDELRSIRGVPIAPPTVDVWNPVFDVTPAALISGIITEFGVVKP 372
                  689999****************************9865426888899999*****************988887776621122445566778899**********************999************9877777889***********************************************************************************************************************************************************************************986 PP

>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   1.6e-09   2.2e-06       8     111 ..      56     166 ..      49     174 .. 0.76
   2 !  119.2   0.1   3.3e-38   4.5e-35     127     292 ..     207     376 ..     184     384 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.6e-09
    TIGR00511   8 kiksmeirGaariaraaaealkeqaakaeaase.eefkkelreaakllietrPtavslpnalryvlkel......sgedveelreevieradefieklekaleklGeiGak 111
                   i+ m++rGa  ia  a+ al   a k++  s+  e  + l      l  +rPtav l  a  + ++ +      +g++ ++  ++ i++a+++++      +++G+ Ga 
  MMETSP1174-20130828|12628_1  56 VIRRMQVRGAPLIAIVASLALAVEASKIKGISSgGEAASFLLDKMTYLRTSRPTAVNLFTATDLLKQVVtnaataTGATADSVFASYIKEAESMLAADVADNRSIGKHGAD 166
                  69*************************99765515677778888999************9987766655332444455555556666777777777766667778888876 PP

  == domain 2    score: 119.2 bits;  conditional E-value: 3.3e-38
    TIGR00511 127 aalsviktafeqGkdievivtetrPrkqG.hitakelrelGipvtlivdsaaryfl..kevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllGelveieerdaeevvdeeelkelg.avkvrnPafdvtPaeyidviitekGliPPesav 292
                   al vi++  e G   +v++ etrP +qG ++ta e+ e  +p tli dsa+   +  k vd vv Gad ++ nG   nkiGt +la+aak ++v++ +aa    +     +G  ++ieer ++e+ +       + +v+v+nP fdvtPa  i  iite G++ P+  +
  MMETSP1174-20130828|12628_1 207 TALGVIRALAERGSLDHVYACETRPYNQGsRLTAFEIVEEQLPGTLICDSAVSALMaiKGVDGVVAGADRVCRNGDTANKIGTYNLAIAAKYHGVPFYIAAPRTTIDLALSTGAEIQIEERGPDELRSIRGVPIAPpTVDVWNPVFDVTPAALISGIITEFGVVKPTNGI 376
                  699**************************55********************997653389*****************************************99999999999**************88766554433**************************9886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 994.99
//
Query:       MMETSP1174-20130828|12633_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|12634_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|12635_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 244.18
//
Query:       MMETSP1174-20130828|12637_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 682.90
//
Query:       MMETSP1174-20130828|12636_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|12639_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 877.55
//
Query:       MMETSP1174-20130828|12641_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 928.81
//
Query:       MMETSP1174-20130828|12642_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|12644_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|12645_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|12646_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 383.97
//
Query:       MMETSP1174-20130828|12647_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-60  201.4   0.0    7.2e-60  200.9   0.0    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.9e-51  173.1   0.0    2.9e-51  172.5   0.0    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.2e-44  150.8   0.0    1.8e-44  150.2   0.0    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.5e-32  109.6   0.0      8e-32  108.4   0.0    1.5  2  TIGR03689 pup_AAA: proteasome ATPase
    1.8e-07   28.3   0.0    2.9e-07   27.6   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    8.3e-07   25.7   0.0    1.1e-06   25.3   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      1e-05   21.8   0.1    0.00066   15.8   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.1e-05   21.8   0.1     0.0023   14.2   0.0    2.1  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    4.8e-05   20.3   0.2     0.0033   14.2   0.1    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    4.8e-05   20.4   0.0    7.6e-05   19.7   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    7.2e-05   19.6   0.1      0.015   12.0   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00021   17.7   0.0    0.00037   16.9   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
    0.00021   18.7   0.0    0.00032   18.1   0.0    1.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0035   14.8   0.0     0.0071   13.8   0.0    1.5  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.037   10.3   0.1       0.11    8.8   0.0    1.8  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      0.047   10.1   0.0      0.082    9.3   0.0    1.3  1  TIGR00764 lon_rel: putative ATP-dependent protease


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.0   2.8e-62   7.2e-60     429     730 ..      67     409 ..      57     411 .. 0.85

  Alignments for each domain:
  == domain 1    score: 200.9 bits;  conditional E-value: 2.8e-62
    TIGR01243 429 kealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleen.sdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslpla.edvdleelakktegytgadieavvreaalaalresvksvakekleaeekei............................................lkdlkvkkkdflealkkvkpsvskedlrvyeklakelk 730
                  ++ + ++   +   ++ e pnv+w+d+ gle +k++l+eav  p +++++f     rp kg+ll+gppgtgk+ lakavate++a f a+   +++skw gesek ++ +f+ ar    aiif+deid++  +r + +se+ + ri  ++l +++g+ +  ++++v++atn p  ldpa+ r  r+++ i++p pd  ar  + ++   + p +  d d e + ++t+g +g+di  vvrea +  lr + + +++ + e+++ +                                             l    v  + f++ l k + +v+ e+l ++e+ ++e++
  MMETSP1174-20130828|12647_1  67 NDEMDKLAGQLSSAIVTEKPNVQWSDVAGLEGAKEALKEAVILPRRFPQLFVG-KRRPWKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRNEGESES-SRRIKTEFLVQMQGVSQVmDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPDASARAYMARLNLGDTPNSlVDADYETIGEETDGCSGSDISVVVREALMEPLR-VCQYATHFREEQVDGKAmltpctvppcprcptkpaasnspeskckrcgmirmglydiesdkLLVPSVSSEMFTQVLGKARATVAMEELVHFEQWTEEFG 409
                  55566666667778999**********************************53.24788**************************************************************************98877765.789************88615689**************988..9********************998887654379*******************************.44333333333333222366777777777777777777777777777777777777775444444688999*********************9999876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   1.1e-53   2.9e-51     112     345 ..      81     310 ..      68     320 .. 0.89

  Alignments for each domain:
  == domain 1    score: 172.5 bits;  conditional E-value: 1.1e-53
    TIGR01242 112 eveerpevsyediGGlekqlreireavelplkkpelfeevGi.eppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdp.rgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm.klaedvdleelaklteGasGadlkaivteaGmfair 345
                   v e+p+v++ d+ Gle   + ++eav lp + p+lf  vG   p kG+llyGppGtGk+ lakava+e++a f  + +s+lv k+ Ge  +lv+ +f+la+    +iifideid+++  r + ++   r ++    ++l +++G     + + v++atn +  ldpa+ r  rf++ i +plpd + r  + ++      +   d d e++ + t+G+sG+d+  +v ea m  +r
  MMETSP1174-20130828|12647_1  81 IVTEKPNVQWSDVAGLEGAKEALKEAVILPRRFPQLF--VGKrRPWKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRNEGESESSRRIK---TEFLVQMQGVSQvMDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPDASARAYMARLNLGDTpNSLVDADYETIGEETDGCSGSDISVVVREALMEPLR 310
                  599**********************************..5651688*************************************************************************99987777777665...4678999999762677999**************98..9***************998877654431445679************************999887 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0     7e-47   1.8e-44      45     274 ..      80     306 ..      57     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 150.2 bits;  conditional E-value: 7e-47
    TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdfLknpkkftkl..GakiP.kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfet.negvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.eevdlkkvarrtpGfsGadlanlvneaal 274
                  ++ +ek++v+++dvaG++ ake l+e v     p++f +l  G + P kG+ll+GpPGtGk  lakava ea+  ff is sd+v  + G   + v+ lfe a+ +  +iifiDeiD++  +r++g ++  + r +    +Lv+m G ++  +g++vl atn p  LD+a+ r  rf++++ + +Pd + r  + ++ + ++  +  + d +++ ++t G sG+d++ +v ea +
  MMETSP1174-20130828|12647_1  80 AIVTEKPNVQWSDVAGLEGAKEALKEAVIL---PRRFPQLfvGKRRPwKGILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRNEGESE-SSRRIK--TEFLVQMQGVSQvMDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPDASARAYMARLNLGDTPNSlVDADYETIGEETDGCSGSDISVVVREALM 306
                  445679********************9965...7777775449998889***************************************************************************97555.334444..589******9873689*****************99..**********************999887765789999********************976 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2     3e+02     451     482 ..       8      40 ..       5      59 .. 0.80
   2 !  108.4   0.0   3.1e-34     8e-32     169     371 ..      78     263 ..      70     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.2
    TIGR03689 451 kkaaikdel.eggqkglraehllaavadevren 482
                  k++++kd++ +  +  ++ +++l+ v de r+ 
  MMETSP1174-20130828|12647_1   8 KNKSVKDTIlNRVEGYMQRAEVLKGVIDEQRQG 40 
                  8899***99455555578889999999999875 PP

  == domain 2    score: 108.4 bits;  conditional E-value: 3.1e-34
    TIGR03689 169 eelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGvesl.enviviGasnredlidPailrPGrldvkirierPdaeaaa 371
                  ++ ++ e P+v ++d+ Gl+   e +++av lP  +++l+     +p kG+llyGPPG+Gk  +akava+           a + f+ i   +l++k+ Ge+e+ ++ +fe ar +    +  ++f+de+ds+   r  G s +    +   +l ++ Gv ++ + ++v+Ga+n    +dPai r  r++ +i i  Pda+a a
  MMETSP1174-20130828|12647_1  78 SSAIVTEKPNVQWSDVAGLEGAKEALKEAVILPRRFPQLFVGK-RRPWKGILLYGPPGTGKSYLAKAVATE----------ADAKFFAISSSDLVSKWQGESEKLVKTLFELARAE----EHAIIFIDEIDSMCGSRNEGES-ESSRRIKTEFLVQMQGVSQVmDGLLVLGATNVPWELDPAIRR--RFEKRIYIPLPDASARA 263
                  567899**********************************875.69**********************973..........45789*************************99953....4579****************86.56778999*********98527899***************99..9999*******997644 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.1e-09   2.9e-07      32      93 ..     126     195 ..     118     205 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.1e-09
    TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal.ek....pgDlaailtal...eegdvlfiDeihrl 93 
                   +llyGPPG Gk  lak +a+e ++k   +s+  l +k    ++ l+  l +l   ee+ ++fiDei  +
  MMETSP1174-20130828|12647_1 126 GILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLvSKwqgeSEKLVKTLFELaraEEHAIIFIDEIDSM 195
                  69************************9888777662333222456877776653337899*******887 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.4e-09   1.1e-06     313     411 ..     125     219 ..      58     255 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4.4e-09
    TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaL...ggvlFlDEayaLvekrdgakddfGleaidtLLarlE 411
                  k +ll GPPGtGk  +A++va         +  +   +s +dl++++ gese+  + l + a      ++F+DE+ ++   r++ + +    +    L+++ 
  MMETSP1174-20130828|12647_1 125 KGILLYGPPGTGKSYLAKAVATE-------ADAKFFAISSSDLVSKWQGESEKLVKTLFELARaeeHAIIFIDEIDSMCGSRNEGESESSRRIKTEFLVQMQ 219
                  6689****************986.......678999****************98888888665222579*********999888777777777777777776 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0043       1.1     480     515 ..     117     152 ..      91     160 .. 0.80
   2 !   15.8   0.0   2.6e-06   0.00066     242     303 ..     150     207 ..     148     261 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0043
    TIGR02639 480 lkeenkPvgsflfvGptGvGktelakqLaeelgvel 515
                  +  + +P    l +Gp G Gk  lak++a+e   ++
  MMETSP1174-20130828|12647_1 117 FVGKRRPWKGILLYGPPGTGKSYLAKAVATEADAKF 152
                  5668899999*******************9987776 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.6e-06
    TIGR02639 242 akiysLdlgsllaGtkyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsldas 303
                  ak ++++ ++l+  +k++G+ e+ +k++ e  ++ee+ai+fiDei  + g+   +++  + s
  MMETSP1174-20130828|12647_1 150 AKFFAISSSDLV--SKWQGESEKLVKTLFELARAEEHAIIFIDEIDSMCGSRNEGES--ESS 207
                  677777778887..59*************99999999***********987666555..444 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.003      0.78     586     617 ..     115     146 ..      87     155 .. 0.74
   2 !   14.2   0.0   8.8e-06    0.0023     244     329 ..     162     249 ..     148     262 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.003
    TIGR03346 586 aglsdPnrPigsflflGptGvGktelakalae 617
                    +   +rP    l+ Gp G Gk  laka+a+
  MMETSP1174-20130828|12647_1 115 QLFVGKRRPWKGILLYGPPGTGKSYLAKAVAT 146
                  44556789*********************996 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 8.8e-06
    TIGR03346 244 akyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllkPal...arGelhci.Gattldeyrkyiekdaalerrfq 329
                  +k++Ge e+ +k++  e++++e + i+fide+  + G+ + eG  +++  +k  +    +G  +++ G   l       e d+a+ rrf 
  MMETSP1174-20130828|12647_1 162 SKWQGESEKLVKTL-FELARAEEHAIIFIDEIDSMCGS-RNEGESESSRRIKTEFlvqMQGVSQVMdGLLVLGATNVPWELDPAIRRRFE 249
                  69****99888875.68999999*************97.567777777766653211123333322234444444445677777777775 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.02       5.3      48      81 ..     125     158 ..     117     164 .. 0.91
   2 !   14.2   0.1   1.3e-05    0.0033     242     272 ..     178     208 ..     165     225 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.02
    TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveat 81 
                  k il+ G+ G Gk+ +a+ +a  a+a f  + ++
  MMETSP1174-20130828|12647_1 125 KGILLYGPPGTGKSYLAKAVATEADAKFFAISSS 158
                  88************************99988765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.3e-05
    TIGR00390 242 vdrveesGiifideidkiakkgessgadvsr 272
                  + r+ee+ iifideid ++ + ++ +++ sr
  MMETSP1174-20130828|12647_1 178 LARAEEHAIIFIDEIDSMCGSRNEGESESSR 208
                  679****************988777777666 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.9e-07   7.6e-05     120     208 ..     127     211 ..     122     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.9e-07
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia.rksenas.itrdvs 208
                  ill Gp G+Gk+ la+++a e d  f    ++ l  + + Ge  e +++ l++ a       e+ ii+ideid ++  ++e++s  +r + 
  MMETSP1174-20130828|12647_1 127 ILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLV-SKWQGES-EKLVKTLFELARA----EEHAIIFIDEIDSMCgSRNEGESeSSRRIK 211
                  9**********************987544445554.4578885.8888888887765....4789********985234444431345444 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.8e-05     0.015      42      66 ..     126     150 ..     115     163 .. 0.86
   2 !    5.1   0.0    0.0073       1.9     117     145 ..     172     200 ..     165     211 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.8e-05
    TIGR02928  42 nvliyGktGtGKtavtkkvlkelee 66 
                   +l+yG++GtGK+  +k+v  e+ +
  MMETSP1174-20130828|12647_1 126 GILLYGPPGTGKSYLAKAVATEADA 150
                  69*****************988765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0073
    TIGR02928 117 feelvkeleeredsliivLDEiDklv.kke 145
                   ++l+ el + e+ +ii +DEiD+++ +++
  MMETSP1174-20130828|12647_1 172 VKTLF-ELARAEEHAIIFIDEIDSMCgSRN 200
                  44444.4566777889999******95444 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-06   0.00037     356     386 ..     127     157 ..     116     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.5e-06
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlsl 386
                  + l+GPPG GK+ lak++A+  + kf+ +s 
  MMETSP1174-20130828|12647_1 127 ILLYGPPGTGKSYLAKAVATEADAKFFAISS 157
                  789************************9985 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06   0.00032      41     107 ..     127     200 ..     111     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.3e-06
    TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll....vev...legleqaelvalDdvealagere 107
                  + l+G++g+Gks+L +A++++a ++  ++   +l ++ q +    v+    l+ +e+ +++ +D+++++ g+r+
  MMETSP1174-20130828|12647_1 127 ILLYGPPGTGKSYLAKAVATEADAKFFAISSSDLVSKWQGEseklVKTlfeLARAEEHAIIFIDEIDSMCGSRN 200
                  789****************9998764443333333222222112232234478899999**********99884 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.4   1.9e+03     164     181 ..      13      30 ..       8      37 .. 0.71
   2 !   13.8   0.0   2.8e-05    0.0071       2      36 ..     127     163 ..     126     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 7.4
    TIGR01351 164 eevvkkRlevYkeqtepl 181
                  ++++ +R+e Y +++e l
  MMETSP1174-20130828|12647_1  13 KDTILNRVEGYMQRAEVL 30 
                  567778888887776654 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.8e-05
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGdllRa 36 
                  ++l GpPG+GK+  ak +a++ +  ++ is+ dl+ +
  MMETSP1174-20130828|12647_1 127 ILLYGPPGTGKSYLAKAVATEADakFFAISSSDLVSK 163
                  6899**************9986533899***999865 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00043      0.11     176     199 ..     125     148 ..       4     154 .. 0.62
   2 ?   -2.5   0.0       1.1   2.9e+02     325     354 ..     228     257 ..     223     265 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00043
    TIGR02903 176 qhiilyGppGvGkttaarlaleea 199
                  + i+lyGppG Gk+  a+ +  ea
  MMETSP1174-20130828|12647_1 125 KGILLYGPPGTGKSYLAKAVATEA 148
                  2599**********9999877665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.1
    TIGR02903 325 vliGattrdpeeinpalrsrcaevffeplt 354
                  +l+  +t+ p e++pa+r r  +  + pl 
  MMETSP1174-20130828|12647_1 228 LLVLGATNVPWELDPAIRRRFEKRIYIPLP 257
                  455556789***********9887777775 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00032     0.082      39      58 ..     126     145 ..     116     173 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00032
    TIGR00764  39 nvlliGePGvGksmlakama 58 
                   +ll G PG+Gks laka+a
  MMETSP1174-20130828|12647_1 126 GILLYGPPGTGKSYLAKAVA 145
                  589***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 971.06
//
Query:       MMETSP1174-20130828|12651_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|12652_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|12653_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   21.2   0.2    2.5e-05   20.8   0.1    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   6.1e-09   2.5e-05     476     510 .]      11      45 ..       6      45 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.1e-09
    TIGR00879 476 gqgvvFiffgalnvlalilvyfflpetkgltleei 510
                  g   +F +f +++ +++i+v+ f+pet+g++le+i
  MMETSP1174-20130828|12653_1  11 GDSTTFGIFTMITSASVIFVFTFVPETRGRELEDI 45 
                  5667999**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|12655_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 675.47
//
Query:       MMETSP1174-20130828|12656_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1126.74
//
Query:       MMETSP1174-20130828|12659_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|12657_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 730.65
//
Query:       MMETSP1174-20130828|12658_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-66  223.1   0.3    2.5e-66  222.0   0.2    1.4  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
      1e-45  154.1   0.5    1.5e-45  153.5   0.3    1.2  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.3e-39  133.9   2.2    2.4e-39  133.0   1.5    1.4  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    4.5e-36  122.3   0.1    5.7e-36  122.0   0.0    1.1  1  TIGR02079 THD1: threonine dehydratase
    1.4e-17   61.8   0.1    1.6e-16   58.4   0.0    2.1  1  TIGR01136 cysKM: cysteine synthases
    2.7e-16   57.5   0.1    1.2e-15   55.4   0.1    1.8  1  TIGR01139 cysK: cysteine synthase A
    2.3e-14   50.7   0.3    8.5e-08   29.1   0.2    2.0  2  TIGR01137 cysta_beta: cystathionine beta-synthase
    1.5e-11   41.9   0.0    4.5e-11   40.3   0.0    1.7  1  TIGR00260 thrC: threonine synthase
    1.9e-11   41.5   0.1    1.1e-06   25.8   0.0    2.1  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.1e-09   35.1   0.0    3.1e-07   28.0   0.0    2.2  2  TIGR01138 cysM: cysteine synthase B
      1e-06   25.6   0.1    1.5e-06   25.1   0.1    1.2  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    1.8e-05   21.3   0.1    2.4e-05   20.9   0.0    1.2  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
     0.0037   13.9   0.0       0.14    8.7   0.0    2.1  2  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   0.2     8e-69   2.5e-66       1     291 [.      34     344 ..      34     350 .. 0.87

  Alignments for each domain:
  == domain 1    score: 222.0 bits;  conditional E-value: 8e-69
    TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadfDeayklaeelaeeegrvfvhafdDefviaGqGtlgleiledl.........pd.....vdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikave.svktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavleekv........d.vkgkkvavvvsGGnidlnll 291
                  tp+    ++ ++ g e+y+k + +qktGsfk+rGa+n  akl    k   vv+ s+Gn aq  a+a + +g++a+ivmP  apl k +at++yGa+v +   +     ++a    ee g vfvh+ +D+ viaGqGt++le+l+++         +d     +d v+vPvGGGGLisG+a+++k   p++ v+G e  a +   +s   g i++ e  v+++aDG+ + + g+ t+++v++ vD ++ vde++i +a  l+  r+k+ +e++  vgva  l e +          +   +++vv++GGn+d+  l
  MMETSP1174-20130828|12658_1  34 TPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGATNACAKLP---KGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQARVAAAAATCEELGGVFVHPSEDPDVIAGQGTIALEVLDQIlprpnaeegSDtqrapLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAVDDAFRSKACGSIQTNEqGVTSVADGLKT-QLGPNTWPVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAVALGEDLrclvkerlGdETRARIGVVLCGGNADPVAL 344
                  67778889999******************************97...5678************************************************99999999999999999***************************987433332222222333349************************************************9977615789*****97.689*********************************************98775554111111113244568***********9776 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   0.3   4.8e-48   1.5e-45      18     281 ..      34     307 ..      29     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 153.5 bits;  conditional E-value: 4.8e-48
    TIGR01124  18 tplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakalelaqekgltfiapfddplviaGqGtvalellrq.............veedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqaleaGerv.kldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalala 281
                  tp+ + + + + ++ ++++k +  q   sfk rGa n  a+l++      v++ s+Gn aq +a++++  G++a+ivmp+++p  k +a  ++G++v +   + +   a a +  +e g  f++p +dp+viaGqGt+ale+l q             ++ +ldav vpvGGGGli+G+a+++k+  p++ v+g e++  +   ++ + G +  + + v   adG    ++G +t+ ++++ +d i++vd d++ +a k v+  ++  +ep+  +++a
  MMETSP1174-20130828|12658_1  34 TPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGATNACAKLPK---GSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQARVAAAAATCEELGGVFVHPSEDPDVIAGQGTIALEVLDQilprpnaeegsdtQRAPLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAVDDAFRSKACGSIQtNEQGVTSVADGLK-TQLGPNTWPVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVA 307
                  66666666667778899*************************96...568***********************************************999999888889999999999*************************984444433322222234799**********************************99998999998886504455788999987.579****************************************9887776 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   1.5   7.6e-42   2.4e-39       1     288 [.      14     311 ..      14     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 133.0 bits;  conditional E-value: 7.6e-42
    TIGR02991   1 vslddieraaeriag.rveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaqeeverlvkerGlvmlppfdhadivaGqGtlglevveqv...pd...........lalvlvplsGGGlasGvavavkalkpatrviGvsmerGaamkasl..kaGrpvlveel..ptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaalla 288
                  vsl+ + +a++ri    +  tp+ + + +  l+G+++ +k +  q tGsfk rGatna   l    + + vv+ s+Gn  +ala+a  + g++a+i m +  p  k ++   +Ga+vr    + +          +e G v + p +++d++aGqGt++lev++q+   p+           l+ v+vp+ GGGl+sG+a+++ka+ p++ v+G      +a+ +++  ka + ++ +e+   ++ad l   +G     t+ ++++ +d i+ + ed+i ++ +  +++ ++ +e +  vG+a  l 
  MMETSP1174-20130828|12658_1  14 VSLESVVAARDRIRPlGIGVTPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGATNACAKLP---KGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQARVAAAAATCEELGGVFVHPSEDPDVIAGQGTIALEVLDQIlprPNaeegsdtqrapLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEP---SAVDDAFrsKACGSIQTNEQgvTSVADGLKTQLGP---NTWPVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAVALG 311
                  79999********863699****************************************9997...5678*************************************************9887777777777888999**************************976554422222233333568***************************99754...44444441256667777776335788888888885...599*****************************************98775 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   1.8e-38   5.7e-36       2     286 ..      18     310 ..      17     345 .. 0.84

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 1.8e-38
    TIGR02079   2 diekakkrlkev.vketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiieGqgtvaveileql......eee......kidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldk.idkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsia.al 286
                   + +a+ r++++ +  tP+ + +++ +  + e+y+k + +q+  s+k rGa n+  +l +     +vv  s+Gn aq +a+a  + g+++t+ mP ++P  k + +  +G    +v++   t  +  aaa  ++e+ g  +++P +d+d+i+Gqgt+a+e+l+q+      ee+        d v+vpvGGGGlisG+++++k++ +   ++g eP+       s + g + t ++ +    dG    ++G  ++ ++++ vd +  v+e+ + s+   ++++  + +eP+  + +a al
  MMETSP1174-20130828|12658_1  18 SVVAARDRIRPLgIGVTPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGATNACAKLPK---GSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGA---DVRFCEPTTQARVAAAAATCEELGGVFVHPSEDPDVIAGQGTIALEVLDQIlprpnaEEGsdtqraPLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAVDDAFRSKACGSIQTNEQgVTSVADGLK-TQLGPNTWPVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAvAL 310
                  5778999999986889*************************************9988875...679*************************************99999996...7999*********************************************96444433221333333479*********************************998888888888887776653777778865.689***************************99***********8888776333 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   5.1e-19   1.6e-16       5     267 ..      31     308 ..      29     316 .. 0.70

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 5.1e-19
    TIGR01136   5 iGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdt.......dgk.......idafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg.........kpgphki.qgigagfiPkild..eelldevikvededaietarrlakeegilvGiSsGaavaa 267
                  iG tP+ + + + +    e++ K + ++ +gS K R a++         +l kg+ ++   SGN   aLA+++ a g++ ++vmp ++ l ++++   yGa++ + e+++ ++  ++ a    ee ++ +  ++  e p+ + a + t + E+l ++       +         +da+v  vG gG i+G++ v+k ++p++ +v++eP+      ++         ++g   +  g++++  P+ +   ++ +d +++v+++d i+ ++ + ++  + +  S+G  va 
  MMETSP1174-20130828|12658_1  31 IGVTPVFTCDiMDRLSGHELYFKGDLFQKTGSFKSRGATNA------CAKLPKGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQAR--VAAAAATCEELGGVF--VHPSEDPD-VIAGQGTIALEVLDQIlprpnaeE-GsdtqrapLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAVDDAFRSkacgsiqtnEQGVTSVaDGLKTQLGPNTWPvvRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAV 308
                  9*********555555699******************9875......45799*****************************************************99876544..334444455544333..33334443.334455556665554322222211.01222346***********************************987654444334444444333333313444445555443114556777777777777777666666666666666666655 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   3.8e-18   1.2e-15       5     268 ..      31     309 ..      28     315 .. 0.71

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 3.8e-18
    TIGR01139   5 iGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdl..........dgk...ldafvagvGtGGtitGvgevlkekkpdikvvavePaes..pvlsgg.......kpgphki.qGigagfiPkv..LdkevidevikvsdeeaietarrlakeeGilvGissGaavaaa 268
                  iG tP+   + +      e++ k + ++ ++s k r a++         +l kg+ +v   sGn   ala+ ++a g++++++mp +  l +++    yGa++   +++++    ++ a    ee +  ++  +  e+p +  + + t a e+l ++          d +   lda+v  vG GG i+G++ v+k  +pd+ vv++eP++   +  s++       ++g   +  G+ ++  P+   + ++ +d +++v++++ i+ ++ + ++  + +  s+G  va a
  MMETSP1174-20130828|12658_1  31 IGVTPVFTCDiMDRLSGHELYFKGDLFQKTGSFKSRGATNAC------AKLPKGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQA--RVAAAAATCEELGGVFV--HPSEDP-DVIAGQGTIALEVLDQIlprpnaeegsDTQrapLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAVddAFRSKAcgsiqtnEQGVTSVaDGLKTQLGPNTwpVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAVA 309
                  99*******9545556679*****************998754......5799*****************************************************9987644..34444444555554442..222222.233344444444444332222211111222446***********************************8641133333355555555555544246555555554222355678888888888888888888887888888888777766 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-07     6e-05       9     116 ..      31     133 ..      24     146 .. 0.89
   2 !   29.1   0.2   2.7e-10   8.5e-08     170     281 ..     192     310 ..     179     334 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.9e-07
    TIGR01137   9 iGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrt.Pt 116
                  iG tP+   + + +    e++ k ++f   Gs k r a+      ++  +l +g++++   sGn    la++++  G ++ iv+P      k +    +Ga++  + Pt
  MMETSP1174-20130828|12658_1  31 IGVTPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGAT------NACAKLPKGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCePT 133
                  7899999998888888899*****************876......46679****************************************************9777455 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.7e-10
    TIGR01137 170 kldalvagvGtGGtitGiarklkekedkvrivGadPeG......silaepeelnktektdykveG....iGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaal 281
                   lda+v  vG GG i+Gia  +k++ +++++vGa+P        s  +++ + n+ + t    +G    +G + +P v   + vd+i+++d+++  + ++ + +   l +  s+G  v++al
  MMETSP1174-20130828|12658_1 192 PLDAVVVPVGGGGLISGIATVIKARFPDMIVVGAEPSAvddafrSKACGSIQTNEQGVT-SVADGlktqLGPNTWPVVR--DKVDVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAVAL 310
                  689*******************************9974222111333333344444443.3445611115666666665..569********999999999999999*********999998 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.4e-13   4.5e-11      17     307 ..      28     309 ..      14     314 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.4e-13
    TIGR00260  17 dlaegstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgnetvlcAtsGdtgaaaaealagk.anvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeife.dkeklklnsvNsinparieaqktyafeiveqlgk............espdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaal 307
                   l  g+t++f+++ +  ++ +++ly k +    t++FK rg    +++ +k+ +    +v++ +sG+ + a+a  +ag  +++++ +++P+   +p+ k++ +    ++a v   + +    q+ v++++   +e  ++ +  s  p  i++q t+a e+++q+                 d vvvpv+ +g+++ i       k    p +++ + ae +  + ++f+ +   + +++ + +    d ++    +  + ++r +   +  +     +++i++a+k++  + ++ +ep ++v+va+ 
  MMETSP1174-20130828|12658_1  28 PLGIGVTPVFTCDIM-DRLSGHELYFKGDLFQKTGSFKSRG---ATNACAKLPK--GSAVVTHSSGNFAQALA--FAGSaSGLHATIVMPSN--APLpKQQAT--AGYGADVRFCEPTT---QARVAAAAAtCEELGGVFVHPSEDPDVIAGQGTIALEVLDQILPrpnaeegsdtqrAPLDAVVVPVGgGGLISGIATV---IKAR-FP-DMIVVGAEPS-AVDDAFRSKACGSIQTNEQGVTSVADGLKTQLGPNTWPVVRDKVDVILRV----DEDDIISATKLVWTRMKLQIEPSAGVGVAVA 309
                  577899999999855.667777*******************...8998888765..46899***********9..6665169**********..999555544..46777776666664...44444444424666677788899*****************985547778777765344599******78888777665...3333.79.*******997.99999977774444445577777778888888899999999999999888....99**************************985 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.5e-09   1.1e-06      19     110 ..      45     130 ..      30     146 .. 0.86
   2 !   13.6   0.1   1.8e-05    0.0058     166     264 ..     192     303 ..     182     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.5e-09
    TIGR03945  19 dekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevv 110
                   +  el+ K + +  +gS K r A++         ++ +g++++  sSGn+a aLa+   a Gl+ ++v+ +++   +++    +ga+v   
  MMETSP1174-20130828|12658_1  45 LSGHELYFKGDLFQKTGSFKSRGATNAC------AKLPKGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFC 130
                  455689******************8754......568999*********************************9999999999999988765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.8e-05
    TIGR03945 166 evdylfvgvsttGtlaGvarrlrekspevkvv.....avD......avGSvifggepgkRlipGlGasvvpel..ldeslidevvkvseletvaacrelleregilaGgSsG 264
                   +d ++v+v+ +G + G+a  ++ ++p++ vv     avD      a GS+  +++  +    Gl +   p+   + ++++d +++v+e + + a++ + +r  + +  S+G
  MMETSP1174-20130828|12658_1 192 PLDAVVVPVGGGGLISGIATVIKARFPDMIVVgaepsAVDdafrskACGSIQTNEQGVTSVADGLKTQLGPNTwpVVRDKVDVILRVDEDDIISATKLVWTRMKLQIEPSAG 303
                  6899***************************976666788555555579999999999999999999999987335688999999999999999888887777666666665 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   9.7e-10   3.1e-07       6     114 ..      31     133 ..      29     148 .. 0.89
   2 ?    4.7   0.0     0.012       3.8     167     199 ..     196     228 ..     187     237 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 9.7e-10
    TIGR01138   6 vGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdke 114
                  +G tp+     +   ++ e++ k + +  +Gs k r a           ++ +G  ++  +sGn   ala ++++ G++ +++mp+n    +++a   yGa++ + ++ 
  MMETSP1174-20130828|12658_1  31 IGVTPVFTCDIMDRLSGHELYFKGDLFQKTGSFKSRGATNAC------AKLPKGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPT 133
                  78999999999999999********************96544......467889***********************************************99887765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.012
    TIGR01138 167 fvsslGttGtimGvsrflkeqnpavqivGlqpa 199
                   v  +G +G i G++  +k + p++ +vG +p 
  MMETSP1174-20130828|12658_1 196 VVVPVGGGGLISGIATVIKARFPDMIVVGAEPS 228
                  57889************************9996 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   4.7e-09   1.5e-06      93     304 ..      77     287 ..      59     318 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.7e-09
    TIGR01747  93 kdatfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveql.....relgselpthvllqaGvGsl.aGavlGylveafsenipniivv..eadkadclyqsavkddGeirlvdGdlatimaGlacG.epniisfeilrnntslfisa..ddsvaak 304
                  k ++ vt + Gn  + +a+a    G++a ++mp  + + ++++    Ga+v   +   +  v  a    +e g+v+v  +      + p  ++ G +t+a+e  +q+     +e gs++     l a v  +  G+++  ++ +++ + p +ivv  e+++ d  ++s     G i++ +  ++++  Gl     pn  +++++r++  + + +  dd+++a 
  MMETSP1174-20130828|12658_1  77 KGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQARVAAAAATCEELGGVFVHPS------EDPD-VIAGQGTIALEVLDQIlprpnAEEGSDTQ-RAPLDAVVVPVgGGGLISGIATVIKARFPDMIVVgaEPSAVDDAFRSKAC--GSIQTNEQGVTSVADGLKTQlGPN--TWPVVRDKVDVILRVdeDDIISAT 287
                  45678999***************************************************99*9999**********9865......4465.5689***********84433334554443.34566666655156789999*************96678899999**9877..*****************8752566..6******99887554116777765 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.5e-08   2.4e-05     115     323 ..      80     287 ..      62     334 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.5e-08
    TIGR03528 115 tfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlnyddavrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeql....kelgvekpthvllqaGvGsla.gavlGylaskfgeerpiiviv..epdkadclyrsavaddGeihlvtGdlatimaGlacGepntigweilrdyasafvsc..edsvaak 323
                    vt + Gn  + +a+a    g ++ + mP  +   ++++    Ga++   +      v  aa ++ee G v v  +      e P  i  G +t+ale+l+q+    ++++ + +    l a v  +  g+++  +a +++++ p +++v  ep + d  +rs +   G+i++ +  ++++  Gl        +w+++rd  +  + +  +d+++a+
  MMETSP1174-20130828|12658_1  80 AVVTHSSGNFAQALAFAGSASGLHATIVMPSNAPLPKQQATAGYGADVRFCEPTTQARVAAAAATCEELGGVFVHPS------EDPDVI-AGQGTIALEVLDQIlprpNAEEGSDTQRAPLDAVVVPVGgGGLISGIATVIKARFPDMIVVgaEPSAVDDAFRSKAC--GSIQTNEQGVTSVADGLKTQ-LGPNTWPVVRDKVDVILRVdeDDIISAT 287
                  568999****************************************************************9999864......557755.799**********8433222233334455677776665414677778888888889999886688899999999877..9****************875.44557******99987654215777776 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00045      0.14      94     151 ..      57     112 ..      45     124 .. 0.88
   2 ?    2.9   0.0     0.025       7.9     320     355 ..     273     308 ..     264     321 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00045
    TIGR03844  94 llktcsfkelealptlqrlkekgkkvlvvasaGntgrafaevsaltgkpvvlvvPesa 151
                  + kt+sfk   a+ +  +l   ++ ++v  s+Gn ++a+a   +  g    +v+P++a
  MMETSP1174-20130828|12658_1  57 FQKTGSFKSRGATNACAKLP--KGSAVVTHSSGNFAQALAFAGSASGLHATIVMPSNA 112
                  679******99999998886..57788999*************************986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.025
    TIGR03844 320 glmyavsneeakeakklfeesegidilPaaavavaa 355
                  + +  v++++  +a+kl+ ++  + i+P+a v va 
  MMETSP1174-20130828|12658_1 273 DVILRVDEDDIISATKLVWTRMKLQIEPSAGVGVAV 308
                  678889*************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.70
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|12660_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29   10.1   3.4       0.32    9.9   0.5    2.4  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   7.9e-05      0.32      29      50 ..      11      32 ..       1      35 [. 0.73
   2 ?   -0.4   0.1      0.13   5.3e+02       7      26 ..      63      82 ..      46      92 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.9e-05
    TIGR04101 29 aeqseekvaaeieekkkpKHGe 50
                  ++s++k   + ++kkk KHG+
  MMETSP1174-20130828|12660_1 11 HQNSDKKLSSNEQKKKKRKHGD 32
                 46677777777789*******9 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.13
    TIGR04101  7 kiFkkkkskakqekleleai 26
                 +++  k s++ +   e+e++
  MMETSP1174-20130828|12660_1 63 EVYEDKASEEDHALAEAEHS 82
                 45555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 820.22
//
Query:       MMETSP1174-20130828|12664_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|12661_1  [L=1197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.91
# Mc/sec: 1736.16
//
Query:       MMETSP1174-20130828|12666_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|12665_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.85
# Mc/sec: 1038.83
//
Query:       MMETSP1174-20130828|12670_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 420.94
//
Query:       MMETSP1174-20130828|12673_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|12675_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1174-20130828|12682_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|12681_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 902.93
//
Query:       MMETSP1174-20130828|12684_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|12683_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1524.70
//
Query:       MMETSP1174-20130828|12689_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 194.32
//
Query:       MMETSP1174-20130828|12687_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1060.80
//
Query:       MMETSP1174-20130828|12690_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.5   0.0      0.031   11.3   0.0    1.1  1  TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component


Domain annotation for each model (and alignments):
>> TIGR00822  EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.6e-06     0.031     172     195 ..      65      88 ..      41      95 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.6e-06
    TIGR00822 172 aiPevvtkGleiaGGiivvvGyal 195
                    P+++ k ++ aGG+i v G++l
  MMETSP1174-20130828|12690_1  65 QTPAWLHKHFQSAGGMIRVGGFGL 88 
                  67********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1174-20130828|12691_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 471.39
//
Query:       MMETSP1174-20130828|12695_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1291.61
//
Query:       MMETSP1174-20130828|12694_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 850.60
//
Query:       MMETSP1174-20130828|12692_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-34  115.9   0.0    5.9e-19   66.2   0.0    2.2  2  TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II
    1.1e-27   93.8   0.0    1.4e-13   48.6   0.0    2.4  2  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
    7.6e-24   82.0   0.0    1.5e-14   52.0   0.0    2.3  2  TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase
    4.7e-05   21.3   0.1       0.15    9.9   0.0    2.5  2  TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
  ------ inclusion threshold ------
      0.021   12.1   0.0       0.18    9.0   0.0    2.0  2  TIGR00083 ribF: riboflavin biosynthesis protein RibF


Domain annotation for each model (and alignments):
>> TIGR02199  rfaE_dom_II: bifunctional protein RfaE, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   7.2e-22   5.9e-19      14     142 ..     131     264 ..     121     266 .. 0.85
   2 !   47.6   0.0   3.9e-16   3.2e-13      10     143 ..     354     491 ..     348     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 7.2e-22
    TIGR02199  14 vftnGcfDllhaGhvkyLekarklgdlLvvglnsDasvkrlkgekrPinseedraevLaaLeavDlvvvfee..dtpeeL...ikelkPdvlvkGgDykleel.vgaelvesyGGevvllefeegksttaiieki 142
                  +f +G fD++h+Gh++  ++ar+lg  L+ g+ns +sv++ kg   Pi++ ++r++v++a + vD v+  +    tpe L   ik+ + d+ v G D  l+    +  ++ +  G  ++++ +eg stt+i+ ++
  MMETSP1174-20130828|12692_1 131 IFVEGAFDVMHYGHANAFRQARALGTYLIAGVNSSESVEQCKGA-PPIMTDDERLAVVSACKWVDEVIPRTPyvMTPEYLdwvIKTYQIDFVVHGDDPCLDADgNDVYALVKERGMYRTVPRTEGVSTTEIVGRM 264
                  6899***************************************9.8*********************9765422688876555999999********877643134444556778999**************998 PP

  == domain 2    score: 47.6 bits;  conditional E-value: 3.9e-16
    TIGR02199  10 gkkvvftnGcfDllhaGhvkyLekarklgdlLvvglnsDasvkrlkgekrPinseedrae.vLaaLeavDlvvvfeedtpeeLikelkPdvlvkGgDyk.leelvgael..vesyGGevvllefeegksttaiiekik 143
                  g kvv   G +D++haGh ++L++ar+lgd ++vg+ +D  v++ +g + P+ + ++r+  vLa   + D++     +  +e+i++l+ +v v G+  + le+l g e+  + +  G  ++++  ++ s   i+++i+
  MMETSP1174-20130828|12692_1 354 GMKVVYLHGGWDMFHAGHTSILRAARELGDYVLVGVLNDGIVNHYRGGSHPVLNLNERVLgVLACKYVNDVILDPPLQITKEMIAALNISVVVTGTISEgLESLNGGEAfrIAKEMGILRVIDSASEVSIGGILSRIR 491
                  679*******************************************************872555555555555567789999************98654267888776522556677788888888888888887775 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.7e-16   1.4e-13       2      65 .]     131     196 ..     130     196 .. 0.96
   2 !   43.0   0.0     1e-14   8.4e-12       2      65 .]     358     424 ..     357     424 .. 0.95

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.7e-16
    TIGR00125   2 vvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekg..pvtsaeerlemlkalkyvdev 65 
                  +++ G Fd  H+GH ++ ++a+ l+ +li gv+s e+v+  kg  p+++ +erl+++ a+k+vdev
  MMETSP1174-20130828|12692_1 131 IFVEGAFDVMHYGHANAFRQARALGTYLIAGVNSSESVEQCKGapPIMTDDERLAVVSACKWVDEV 196
                  6788************************************************************96 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 1e-14
    TIGR00125   2 vvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekg...pvtsaeerlemlkalkyvdev 65 
                  v+  G  d++H GH ++l+ a+el+d+++vgv +d  vn+++g   pv ++ er+  + a+kyv++v
  MMETSP1174-20130828|12692_1 358 VYLHGGWDMFHAGHTSILRAARELGDYVLVGVLNDGIVNHYRGgshPVLNLNERVLGVLACKYVNDV 424
                  7778889*********************************************************985 PP

>> TIGR01518  g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   1.8e-17   1.5e-14       1     122 [.     131     261 ..     131     264 .. 0.79
   2 !   27.7   0.0   6.1e-10     5e-07       3      91 ..     360     450 ..     358     462 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 1.8e-17
    TIGR01518   1 vlvygtfdllheghinllkkakqlgdklival.stdefnlekkkkayqsyekrklvleairyvdlvipeksweqkksd....iaefdidvlvmgddwkgkfdflkeevt..lkvly..lprtkevsttkik 122
                  ++v g+fd++h+gh n +++a+ lg +li ++ s++  +  k+    +  ++r  v+ a ++vd+vip + +    ++    i++++id +v gdd     d  ++ +    + +y  +prt++vstt+i 
  MMETSP1174-20130828|12692_1 131 IFVEGAFDVMHYGHANAFRQARALGTYLIAGVnSSESVEQCKGAPPIMTDDERLAVVSACKWVDEVIPRTPYVMTPEYldwvIKTYQIDFVVHGDDPCLDADGNDVYALvkERGMYrtVPRTEGVSTTEIV 261
                  5789**************************993455677778889999**********************997665542233889**********965544443333321133455448*********995 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 6.1e-10
    TIGR01518   3 vygtfdllheghinllkkakqlgdklivalstdefnlekkkka..yqsyekrklvleairyvdlvipeksweqkksdiaefdidvlvmgdd 91 
                    g +d++h gh  +l+ a++lgd+++v++  d +  + +  +    + ++r l + a +yv+ vi +   +  k+ ia  +i v+v g  
  MMETSP1174-20130828|12692_1 360 LHGGWDMFHAGHTSILRAARELGDYVLVGVLNDGIVNHYRGGShpVLNLNERVLGVLACKYVNDVILDPPLQITKEMIAALNISVVVTGTI 450
                  5799**************************99987666555440156677777777899****************************9975 PP

>> TIGR01510  coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00034      0.28       5      38 ..     134     167 ..     130     224 .. 0.77
   2 !    9.9   0.0   0.00018      0.15       5      35 ..     361     391 ..     356     449 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00034
    TIGR01510   5 pGsFdPvtlGHldiikralklfdevivavainps 38 
                   G+Fd +++GH + +++a++l   +i +v  ++s
  MMETSP1174-20130828|12692_1 134 EGAFDVMHYGHANAFRQARALGTYLIAGVNSSES 167
                  69*******************9999999987665 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00018
    TIGR01510   5 pGsFdPvtlGHldiikralklfdevivavai 35 
                   G +d ++ GH  i++ a++l d v+v+v+ 
  MMETSP1174-20130828|12692_1 361 HGGWDMFHAGHTSILRAARELGDYVLVGVLN 391
                  5999************************975 PP

>> TIGR00083  ribF: riboflavin biosynthesis protein RibF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00021      0.18       5     126 ..     135     245 ..     131     261 .. 0.80
   2 ?    0.5   0.0     0.084        69       5      25 ..     362     382 ..     358     426 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00021
    TIGR00083   5 GkFDGlHlGHqallqelkqkaeeknlpvavlliekkplelfsgkkkpaLtpLeekarqleklgvevllvvkfdeelanlsakqFidqllvkhlrvkelvvGaDFrFGkerkgdvlllkeake 126
                  G+FD +H GH   +++++       l + ++   +   ++ + k +p ++  +e+++++ +++    ++ +   +   +   +++d +++   +++++v G+D +  ++ ++  +l ke+++
  MMETSP1174-20130828|12692_1 135 GAFDVMHYGHANAFRQAR------ALGTYLIAGVNSSESVEQCKGAPPIMTDDERLAVVSACKWVDEVIPR---T-PYVMTPEYLDWVIKT-YQIDFVVHGDDPCLDADGNDVYALVKERGM 245
                  9****************9......5556666666666668888999999999******9999987777653...3.344455799999999.999*******99999999998888888776 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.084
    TIGR00083   5 GkFDGlHlGHqallqelkqka 25 
                  G +D  H GH  +l+++++ +
  MMETSP1174-20130828|12692_1 362 GGWDMFHAGHTSILRAARELG 382
                  77899***********99544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1262.30
//
Query:       MMETSP1174-20130828|12701_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1323.11
//
Query:       MMETSP1174-20130828|12702_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   51.3   0.1    1.6e-07   28.9   0.0    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.6e-12   44.3   0.2    3.1e-07   27.5   0.0    2.1  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.4e-11   40.1   0.0    2.4e-05   21.9   0.0    2.2  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    8.2e-11   39.5   0.1    9.6e-06   22.9   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.2e-10   39.0   0.0    6.2e-05   20.4   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.6e-10   37.7   0.0    3.6e-05   20.0   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.8e-10   37.7   0.2    4.7e-06   23.2   0.0    2.8  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.1e-10   37.3   0.0    1.5e-06   24.6   0.0    2.2  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.8e-10   36.8   0.1      5e-05   19.9   0.0    2.2  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.3e-10   36.3   0.0    1.1e-05   22.8   0.0    2.2  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.2e-09   35.9   0.1    2.1e-06   25.3   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.3e-09   35.5   0.0    2.8e-05   21.2   0.0    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.4e-09   35.4   0.2     0.0005   17.2   0.0    2.4  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.9e-09   35.3   0.1    0.00034   18.2   0.0    2.4  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      2e-09   34.3   0.0    0.00043   16.7   0.0    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.8e-09   34.7   0.0      3e-06   24.8   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      3e-09   34.4   0.1    6.8e-06   23.4   0.0    2.3  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.8e-09   33.2   0.1    0.00041   16.9   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.9e-09   32.9   0.0    1.2e-05   22.0   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.6e-09   33.2   0.0    0.00013   19.5   0.0    2.2  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.3e-08   31.4   0.4    1.3e-05   21.5   0.0    2.3  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.5e-08   32.3   0.1    4.2e-05   21.1   0.0    2.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.8e-08   31.9   0.0     0.0019   15.5   0.0    2.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      2e-08   31.7   0.0    3.5e-05   21.1   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      4e-08   30.8   0.0      0.004   14.4   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
      8e-08   29.5   0.0    0.00021   18.2   0.0    2.5  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.1e-08   30.1   0.1    7.5e-06   23.6   0.0    2.3  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-07   28.3   0.1    0.00018   17.7   0.0    2.4  3  TIGR00958 3a01208: antigen peptide transporter 2
    1.1e-07   29.6   0.1     0.0038   14.8   0.0    2.5  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-07   29.0   0.1    0.00041   17.3   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    9.8e-07   26.3   0.0     0.0011   16.3   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.1e-06   26.2   0.1      0.011   13.1   0.0    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.8e-06   25.7   0.0     0.0032   15.0   0.0    2.3  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.2e-06   25.0   0.1    0.00012   19.3   0.0    2.1  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.8e-06   24.6   0.0      3e-05   21.2   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-05   21.4   0.2    0.00024   18.1   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.2e-05   21.4   0.0        0.1    9.9   0.0    2.2  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      4e-05   21.0   0.0        0.1    9.8   0.0    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    6.5e-05   19.5   0.3      0.068    9.5   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
    7.7e-05   19.6   0.0     0.0011   15.8   0.0    2.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    0.00011   18.8   0.1      0.026   10.9   0.0    2.6  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    0.00012   19.1   0.7     0.0094   12.8   0.0    2.4  2  TIGR01288 nodI: nodulation ABC transporter NodI
    0.00022   16.6   0.3      0.021   10.0   0.1    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00076   16.8   0.0       0.33    8.2   0.0    2.1  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      0.002   14.5   0.0       0.51    6.6   0.0    2.1  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
     0.0021   14.5   0.0      0.047   10.1   0.0    2.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0029   13.9   0.0     0.0097   12.2   0.0    1.7  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0051   14.3   0.0        0.2    9.1   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
     0.0061   11.2   0.1      0.097    7.2   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.068    9.5   0.0    1.9  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      0.015   11.6   0.0       0.86    5.8   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   9.6e-07   7.8e-05       9      49 ..     184     223 ..     176     238 .. 0.79
   2 !   28.9   0.0   1.9e-09   1.6e-07     121     197 ..     335     416 ..     328     422 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 9.6e-07
    TIGR03864   9 faygkrralddvsltvakgefvaLLGpnGaGkstLfslltr 49 
                  f+ g+   +   +lt++kg+f+a+ G nG Gkst fsll+ 
  MMETSP1174-20130828|12702_1 184 FSRGRAD-VAIKDLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  4444333.3445799***********************975 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.9e-09
    TIGR03864 121 glaeraeekvreLnGGhrrrveiarallheP...klLLlDeatvGLDiesraalveevrelvre.eglsvLWat.hlvdeve 197
                   l+  +++   +L+GG+r + + +r+ll +P   +lLL+De  + LD+es+a + +++++ + + + + v++ t h  de +
  MMETSP1174-20130828|12702_1 335 TLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSsTTVLVIYHTdHRHDETS 416
                  566677777889****************98633279*******************999888854144555554437777766 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.8e-05    0.0023     333     370 ..     187     223 ..     136     235 .. 0.82
   2 !   27.5   0.0   3.8e-09   3.1e-07     455     520 ..     343     412 ..     295     419 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.8e-05
    TIGR02857 333 grkpalkevsltvepgelvalvGaSGaGKstllklllg 370
                  gr   ++  +lt++ g+ +a++Ga G+GKst+ +ll+ 
  MMETSP1174-20130828|12702_1 187 GRA-DVAIKDLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  333.34455799**********************9975 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3.8e-09
    TIGR02857 455 rgagLSgGqrqRlaLArallrda...pllllDEPtahLDaeteaevlealrela.egrtvllvaHrlala 520
                      LSgGqr +    r ll      +lll+DE  a+LD+e++a v+ +l++ + +  tvl++ H ++  
  MMETSP1174-20130828|12702_1 343 WHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCgSSTTVLVIYHTDHRH 412
                  4457*************9886666899***********************99997889999999998865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-05    0.0014       5      35 ..     195     225 ..     191     260 .. 0.85
   2 !   21.9   0.0     3e-07   2.4e-05      98     173 ..     330     407 ..     304     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.7e-05
    TIGR01184   5 dleikkgefislighsgcgkstllnliagle 35 
                  dl+i kg f+++ g  gcgkst + l++  +
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSASA 225
                  799********************99998654 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3e-07
    TIGR01184  98 hielvglreaadkrpeqlsggmkqrvaiaralsirp...klllldepfgaldaltreelqekllkiveearvtvlmvth 173
                  ++++ +l++ +d   + lsgg + +    r+l +rp   +lll+de f ald  ++  ++ +l + +  + +tvl++ h
  MMETSP1174-20130828|12702_1 330 KLNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSS-TTVLVIYH 407
                  678889999**************************733369***************99999999988654.56666655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.9e-05    0.0039      13      41 ..     195     223 ..     188     229 .. 0.90
   2 !   22.9   0.0   1.2e-07   9.6e-06     108     183 ..     330     408 ..     291     420 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-05
    TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLtt 41 
                  +l +++g+ +++ G nG GK+tt ++L++
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  6899**********************985 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.2e-07
    TIGR01188 108 llelvelkeaadkkvktysgGmrrrlelaasliaqP...evlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy 183
                   l++  l+  +d+  +t+sgG+r + +  ++l+ +P   ++l +DE    LDp++++ +   ++    + +t+l+  h 
  MMETSP1174-20130828|12702_1 330 KLNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHT 408
                  567778999999*********************98622269********************************998765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-05    0.0011      18      45 ..     195     222 ..     186     230 .. 0.88
   2 !   20.4   0.0   7.7e-07   6.2e-05     125     194 ..     337     409 ..     314     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-05
    TIGR03608  18 slkiekGelvaivGesGsGKstlLnilg 45 
                  +l+i kG ++a++G  G+GKst   +l+
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  699*******************988775 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 7.7e-07
    TIGR03608 125 ekklkkkiyelsgGekqRvalarillke...selilADEPtgsLDkknreevlellkelkeegktiiivtHdp 194
                  ++++++   +lsgG++ +   +r+ll     ++l+l DE  ++LD+++++ v + l+    + +t++++ H  
  MMETSP1174-20130828|12702_1 337 TTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTD 409
                  4555566669*************9886513358***********************************99975 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     9e-06   0.00072     353     526 ..      50     222 ..      10     227 .. 0.66
   2 !   20.0   0.0   4.5e-07   3.6e-05     615     669 ..     346     406 ..     299     411 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 9e-06
    TIGR03796 353 dffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadl.......erldDvlenpvdeeleeeeekaaeseek.......ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                     +rw G+  k      +l+++  ll+++ ++++ l    il vg   vl + +  G++ a    ++s  + ve+ +++  +    eadl       ++l  ++e  + e +++e+ +                   ++ + +++f+  + + + i   +l++ +G+ +A+ G+ G+Gkst   l++
  MMETSP1174-20130828|12702_1  50 FTRERWVGLSRK----ANHLKATASLLETVRSFINWLYWSDILKVGIEVVLAAFMEGGAMAATDVWVNS--RVVEDCIDTLLARSRAEADLaslltdtNKLTALTELWKGEPADDEDGA------LssgglidCSFGDNLLIPHLSFSRGRADVA-I--KDLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  455667776544....46899999***********************************9999887765..344555555555555555551000000444444444433333332221......112223445666677778888877776544.3..4699*******************877765 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 4.5e-07
    TIGR03796 615 nlsGGqrqRleiARaLvknP...siLilDEatsaLDaetEkaidenlrrRg...ctciiva 669
                   lsGGqr + +  R+L  +P    +L++DE  +aLD+e    +  +l r+     t++++ 
  MMETSP1174-20130828|12702_1 346 TLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCgssTTVLVIY 406
                  58**************987522279**********************98742213455555 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00034     0.027     180     380 ..      15     222 ..       4     226 .. 0.61
   2 !   23.2   0.0   5.9e-08   4.7e-06     468     527 ..     344     407 ..     297     411 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00034
    TIGR02203 180 rkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqa.qagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallD....sppekdeGtraler....vrG.kvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp 380
                  r++ ++  ++ ++l +v e+ l+  ++++l gg e  ++R+  +s++  +l+      +++ s +  l  s  l v + ++l    + ga+++ ++ +    +   i++l   +  +a l + l+ ++++ al +    +p + ++G  +         G ++ + +++f   +++r+ +   +l++ +G+ +a+ G  G Gkst  +ll+
  MMETSP1174-20130828|12702_1  15 RSLREKGSKVSSKLIRVTEHDLKHEQQIRLAGGVEFTRERWVGLSRKANHLKATASLLETVRSFINWLYWSDILKVGIEVVLAAFmEGGAMAATDVWVNSRVVEDCIDTLLARSRAEADLASLLTDTNKLTALTElwkgEPADDEDGALSSGGlidcSFGdNLLIPHLSF---SRGRADVAIKDLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  66667777778888888888888888888888888888888888777666665555555555555555444444443333333320233445555555555566667777777777777777777777777665422223444445554433210002221233334444...556666666789********************999985 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.9e-08
    TIGR02203 468 gskLsGGqRqRlaiaRallk..daP.iLiLDeatsaLDneseRlvqaaLerlmkgRtt.lviah 527
                   + LsGGqR +    R ll   d P +L++De  +aLD es  lv   L+r     tt lvi h
  MMETSP1174-20130828|12702_1 344 HGTLSGGQRSKSDFIRTLLLrpDCPdLLLVDEGFAALDPESKALVRTQLNRKCGSSTTvLVIYH 407
                  578*************98743589967788********************98877766266766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00039     0.031     477     503 ..     195     221 ..     185     224 .. 0.88
   2 !   24.6   0.0   1.9e-08   1.5e-06     585     650 ..     338     407 ..     297     413 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00039
    TIGR01846 477 sldikaGeviGivGpsGsGkstltkll 503
                   l i++G+++ ++G  G+Gkst   ll
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  488*******************87776 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.9e-08
    TIGR01846 585 tevgekGaalsGGqrqrialaralvan...Prilildeatsaldyeseavimrnlreickg.rtviiiah 650
                  te ++  ++lsGGqr +    r+l+     P +l++de  +ald es a++  +l++ c +  tv++i h
  MMETSP1174-20130828|12702_1 338 TEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSsTTVLVIYH 407
                  455566689***************987223579**********************998865156777877 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-05    0.0014     334     381 ..     176     221 ..      14     231 .. 0.80
   2 !   19.9   0.0   6.2e-07     5e-05     430     529 ..     298     408 ..     291     409 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-05
    TIGR02868 334 tlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlall 381
                  +l + +ls+s+  a+ ++k  +l++++G  +av+Ga G+GKst  +ll
  MMETSP1174-20130828|12702_1 176 NLLIPHLSFSRGRADVAIK--DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  5777788888888877666..589*******************88877 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 6.2e-07
    TIGR02868 430 rlarpdatdeellaaLervgLadwlraLpdGld....tklgegga...rlSGGerqRlalARaLl...adapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                   + +  ++++++  a   v+La+ l+   dG++    t  +e+ +   +lSGG+r +  + R+Ll      ++ll+DE  + LD+e ++ + ++L+ +  +++tv+++ h 
  MMETSP1174-20130828|12702_1 298 TVTESVVDNDDVRVAQTVVELANDLNFYGDGAKlnisTLTTEQDNwhgTLSGGQRSKSDFIRTLLlrpDCPDLLLVDEGFAALDPESKALVRTQLNrKCGSSTTVLVIYHT 408
                  5556667777888888888888888888888651121323333222338***************96655578**************9998889999888899999999885 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00051     0.041      14      47 ..     187     220 ..     179     232 .. 0.80
   2 !   22.8   0.0   1.4e-07   1.1e-05     141     202 ..     342     405 ..     329     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00051
    TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrs 47 
                  g++ +   +l+i kG ++av G  G Gkst +  
  MMETSP1174-20130828|12702_1 187 GRADVAIKDLTIPKGTFMAVTGANGCGKSTTFSL 220
                  55555555899*******************8765 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.4e-07
    TIGR02315 141 kradqLsGGqqqRvaiaRalaqq...pklilaDEPiasLDpksskqvmdllkrinkekgitvivn 202
                  +   +LsGGq+ +    R+l+ +   p+l+l+DE  a+LDp+s   v  +l r +  +  tv+v 
  MMETSP1174-20130828|12702_1 342 NWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSS-TTVLVI 405
                  44568***************97622268*******************99999888655.445554 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0039      0.31      25      53 ..     195     223 ..     184     229 .. 0.89
   2 !   25.3   0.0   2.6e-08   2.1e-06     126     203 ..     331     411 ..     297     417 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0039
    TIGR02982  25 nleiepgeiviltGpsGsGkttlltligg 53 
                  +l+i +g  + +tG+ G+Gk t ++l+++
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  79999********************9976 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 2.6e-08
    TIGR02982 126 leavgleerldykpedlsgGqkqrvaiaralvarP...klvladePtaaldkksgrevvellqklareqgttillvth.dnr 203
                  l+   l  + d     lsgGq+ +  + r+l  rP   +l+l de  aald +s   v + l+++    +tt+l++ h d+r
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCG-SSTTVLVIYHtDHR 411
                  5666777788888999***************99863337**************98888887777765.56777777773544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00021     0.017       9      39 ..     191     221 ..     185     226 .. 0.87
   2 !   21.2   0.0   3.5e-07   2.8e-05     122     172 ..     339     392 ..     329     415 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00021
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrll 39 
                  v   dl i +G ++ + G  G+Gkst+  ll
  MMETSP1174-20130828|12702_1 191 VAIKDLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  555689*********************9987 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 3.5e-07
    TIGR01186 122 yedryPdelsGGmqqrvGlaralaae...PdlllmdeafsaldPlirdelqdel 172
                   +d++   lsGG++ +   +r+l      Pdlll+de f+aldP  +  ++ +l
  MMETSP1174-20130828|12702_1 339 EQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQL 392
                  56788889**************9876223579************6555444443 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.2e-06    0.0005       4      49 ..     179     223 ..     176     232 .. 0.82
   2 !   15.8   0.0   1.7e-05    0.0014     133     195 ..     342     407 ..     328     416 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.2e-06
    TIGR03873   4 lsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG 49 
                  + ++s+++g+  +    d+t P+G+  ++ G nG+Gkst ++ll+ 
  MMETSP1174-20130828|12702_1 179 IPHLSFSRGRADV-AIKDLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  6677777776554.456899***********************985 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.7e-05
    TIGR03873 133 rdlstlsGGerqrvhlaralaqe...PklllldePtnhldvsaqlellalvrelaaegvtvvvalh 195
                      tlsGG+r + ++ r+l  +   P lll+de    ld +++  + + ++ ++++ +tv+v  h
  MMETSP1174-20130828|12702_1 342 NWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYH 407
                  4467****************87722257*************9998888888888899999999888 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.4e-05    0.0044      21      52 ..     194     225 ..     180     233 .. 0.82
   2 !   18.2   0.0   4.2e-06   0.00034     125     203 ..     334     415 ..     306     424 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.4e-05
    TIGR02673  21 vslkiekgeflfltGasGaGkttllklllgae 52 
                   +l+i kg f+ +tGa G Gk+t + ll + +
  MMETSP1174-20130828|12702_1 194 KDLTIPKGTFMAVTGANGCGKSTTFSLLSASA 225
                  4799***********************98765 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.2e-06
    TIGR02673 125 vgledkakalpeelsgGeqqRvaiaRaivnk...PelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv 203
                    l+  +++   +lsgG + +    R+++ +   P+lll+De    lD+e ++ + + l++ + + ttv+v  h  +  +++
  MMETSP1174-20130828|12702_1 334 STLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTDHRHDET 415
                  5677788889999***************977222579************************************987766555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05     0.001     474     499 ..     196     221 ..     176     224 .. 0.86
   2 !   16.7   0.0   5.4e-06   0.00043     585     642 ..     343     406 ..     289     409 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
    TIGR03797 474 lkiepGefvaivGaSGsGKStllrlL 499
                  l+i +G+f+a+ Ga G+GKSt + lL
  MMETSP1174-20130828|12702_1 196 LTIPKGTFMAVTGANGCGKSTTFSLL 221
                  67899******************998 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5.4e-06
    TIGR03797 585 gggtlSGGQrQRlliAralvrkP...rillfDEATSALDNrtQaiVseslekl...kvtRiviA 642
                    gtlSGGQr +    r+l  +P    +ll+DE   ALD +++a+V   l++    + t +vi 
  MMETSP1174-20130828|12702_1 343 WHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKcgsSTTVLVIY 406
                  3589*********999***999622268********************9998422244555555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0064      0.51      20      46 ..     195     221 ..     181     229 .. 0.85
   2 !   24.8   0.0   3.7e-08     3e-06     115     189 ..     331     406 ..     327     445 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0064
    TIGR00968  20 dlevktGslvallGpsGsGkstllrvi 46 
                  dl++++G ++a+ G  G Gkst + ++
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  79********************87665 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 3.7e-08
    TIGR00968 115 lelvqleklgdrypsqlsGGqrqrvalaralavep...qvllldepfgaldakvrkelrawlrklhdevkvttvfvth 189
                  l++  l+  +d++   lsGGqr +  + r+l + p   ++ll+de f+ald + +  +r+ l +     + ttv+v +
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCG--SSTTVLVIY 406
                  6677889999**********************98622268***********9999999988755433..334444433 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0025       0.2      24      49 ..     195     220 ..     183     228 .. 0.86
   2 !   23.4   0.0   8.5e-08   6.8e-06     119     192 ..     331     405 ..     328     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0025
    TIGR03265  24 slsvkkgelvclLGPsGCGkttLLri 49 
                  +l++ kg ++++ G  GCGk+t + +
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSL 220
                  799*****************997655 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 8.5e-08
    TIGR03265 119 LelvglsgseekyPgqlsGGqqqrvaLaralals...PglLLLDePlsaLDakvrekLreelkklqrklg.vttimvt 192
                  L++  l++ ++ + g lsGGq+ +  + r l l+   P+lLL+De ++aLD   ++ +r+ l    rk g  tt++v 
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQL---NRKCGsSTTVLVI 405
                  677789999**********************99722257************99999988765...4454414555554 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.5e-05    0.0028     342     372 ..     195     225 ..     169     256 .. 0.80
   2 !   16.9   0.0   5.1e-06   0.00041     154     219 ..     339     410 ..     304     418 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.5e-05
    TIGR03719 342 sfklpkggivGviGpnGaGkstlfklitgke 372
                  ++++pkg+ + v G+nG+Gkst f l++ + 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSASA 225
                  4579*********************998765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.1e-06
    TIGR03719 154 eedakveklsGGekrrvalcrlllek...PdlllldePtnhldaesvaWlekflkeykG...tvvavthdry 219
                  e+d+   +lsGG++ +  + r ll +   Pdlll+de    ld es a +   l++  G   tv+++ h  +
  MMETSP1174-20130828|12702_1 339 EQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGsstTVLVIYHTDH 410
                  56666789***********9988866222689**********************998764446888888655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0017      0.14     360     386 ..     195     221 ..     183     224 .. 0.90
   2 !   22.0   0.0   1.5e-07   1.2e-05     476     533 ..     346     407 ..     334     411 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0017
    TIGR02204 360 dltvrpGetvalvGPsGaGkstllell 386
                  dlt+ +G  +a+ G  G Gkst ++ll
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  799**********************99 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.5e-07
    TIGR02204 476 tLsGGqkqriaiarailk..dap.iLLLdeatsaLdaeseqlvqqaleelmkgrtt.lviah 533
                  tLsGGq+ +    r +l   d p +LL+de  +aLd es  lv++ l++     tt lvi h
  MMETSP1174-20130828|12702_1 346 TLSGGQRSKSDFIRTLLLrpDCPdLLLVDEGFAALDPESKALVRTQLNRKCGSSTTvLVIYH 407
                  7*************99862344338999*******************998877666267776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00051     0.041       6      47 ..     182     222 ..     177     231 .. 0.80
   2 !   19.5   0.0   1.6e-06   0.00013     116     192 ..     335     414 ..     322     419 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00051
    TIGR01189   6 laveRgervlleglsfelaaGealvveGpnGiGKttLLRila 47 
                  l+ +Rg   +  + ++++  G +++v+G nG GK+t   +l+
  MMETSP1174-20130828|12702_1 182 LSFSRGRADVAIK-DLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  6667776665444.78899****************9887775 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.6e-06
    TIGR01189 116 gLsgledlpvaqLsAGqkrRlalarLllsk...aplWiLDEPttalDkegvellaellaaHlargGivllathqdlglke 192
                   L+  +d    +Ls Gq+ +  + r ll +     l ++DE ++alD e+ +l+ ++l+  +    +vl+  h+d  ++e
  MMETSP1174-20130828|12702_1 335 TLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTDHRHDE 414
                  67788888999***********999777652224699*********************************9999987766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.8   5.5e+02     347     410 ..      50     109 ..      26     135 .. 0.70
   2 !    7.5   0.0    0.0028      0.22     482     514 ..     190     222 ..     179     228 .. 0.86
   3 !   21.5   0.0   1.6e-07   1.3e-05     603     660 ..     346     407 ..     333     411 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.8
    TIGR03375 347 rlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAav 410
                   ++++W      l++ + +l+++++ll ++ ++++ l    ++ vG+ ++++  +  G++ A+ 
  MMETSP1174-20130828|12702_1  50 FTRERWVG----LSRKANHLKATASLLETVRSFINWLYWSDILKVGIEVVLAAFMEGGAMAATD 109
                  55555543....3455667777778888888888888888888888888888877777777764 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0028
    TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllklll 514
                   +    l+i  G  +a+ G +G+GKst   ll+
  MMETSP1174-20130828|12702_1 190 DVAIKDLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  5667889********************988876 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 1.6e-07
    TIGR03375 603 sLSgGQrqavalaRallkdp...pillLDEPtsalDnsseekllerLkella.dkTlvlvtH 660
                   LSgGQr    + R ll  p   ++ll+DE  +alD +s + + ++L++ +   +T++++ H
  MMETSP1174-20130828|12702_1 346 TLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGsSTTVLVIYH 407
                  69**************987522279************************9994566666666 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0027      0.22      18      46 ..     195     223 ..     187     244 .. 0.85
   2 !   21.1   0.0   5.3e-07   4.2e-05     127     188 ..     345     408 ..     335     426 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0027
    TIGR01277  18 dlsveaGervailGesGaGkstllnliaG 46 
                  dl++ +G  +a+ G  G Gkst ++l++ 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  899*******************9999864 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.3e-07
    TIGR01277 127 eelsGGqrqrvalarclv.rek.p.illldepfsaldpklreemlalvkkladekkltlllvths 188
                  + lsGGqr +  + r l+ r++ p +ll+de f+aldp  +  + + +++ +     t+l++ h 
  MMETSP1174-20130828|12702_1 345 GTLSGGQRSKSDFIRTLLlRPDcPdLLLVDEGFAALDPESKALVRTQLNRKCGSST-TVLVIYHT 408
                  78*************87536543447889**********99999999999998654.55555443 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-05    0.0019      12      40 ..     195     223 ..     187     229 .. 0.90
   2 !   14.0   0.0   7.2e-05    0.0058     123     185 ..     342     407 ..     325     410 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-05
    TIGR01166  12 nlavergevlallGanGaGkstlllhlnG 40 
                  +l++ +g+ +a+ GanG+Gkst ++ l+ 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  68899*******************99985 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.2e-05
    TIGR01166 123 rpthllsgGekkrvaiagavalrp...dvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  +   +lsgG++ +      + lrp   d+ll+de  a ldp+ +  +++ l++   + +tv++  h
  MMETSP1174-20130828|12702_1 342 NWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYH 407
                  44568*****************97222589*********************999999999887666 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0035      0.29      21      45 ..     195     219 ..     180     225 .. 0.82
   2 !   21.1   0.0   4.4e-07   3.5e-05     142     201 ..     344     407 ..     330     424 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0035
    TIGR00972  21 nleikknkvtaliGpsGcGkstllr 45 
                  +l i+k +  a+ G  GcGkst + 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFS 219
                  6899*****************9765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 4.4e-07
    TIGR00972 142 alsLsGGqqqrlciaralaveP...evlLlDePtsaLDpiatekieeliqeLkkk.ytivivth 201
                    +LsGGq+ +    r+l ++P   ++lL+De  +aLDp++ + +   ++    +  t++++ h
  MMETSP1174-20130828|12702_1 344 HGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSsTTVLVIYH 407
                  568*****************9722268******************9887766555155555555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.2e-05     0.005      20      47 ..     195     222 ..     187     230 .. 0.89
   2 !   14.4   0.0   4.9e-05     0.004     144     204 ..     346     409 ..     304     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.2e-05
    TIGR01978  20 nlevkkGevhaimGpnGsGkstLskvla 47 
                  +l++ kG+  a+ G+nG Gkst  + l+
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  79********************887775 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.9e-05
    TIGR01978 144 GfsGGekkrneilqlalleP...klaiLDeiDsGlDvDalkivaegvnklreeekalliithye 204
                    sGG + + + ++ +ll+P   +l ++De  + lD ++  +v +++n+   +++++l+i h +
  MMETSP1174-20130828|12702_1 346 TLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTD 409
                  47****************96333699**********************************9976 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.2   7.4e+02      97     131 ..     116     150 ..     113     159 .. 0.78
   2 !    8.4   0.0    0.0025       0.2      19      52 ..     188     219 ..     173     233 .. 0.76
   3 !   18.2   0.0   2.7e-06   0.00021     130     202 ..     338     413 ..     328     422 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 9.2
    TIGR03258  97 veenvafGlrarkqskaliaervadalklvqlsda 131
                  v e+    l ar +++a++a  ++d+ kl  l++ 
  MMETSP1174-20130828|12702_1 116 VVEDCIDTLLARSRAEADLASLLTDTNKLTALTEL 150
                  55556667889999999999999999999888765 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0025
    TIGR03258  19 garvvlddlsleieaGellallGksGsGkttllr 52 
                   a v ++d  l+i  G  +a+ G  G+Gk+t + 
  MMETSP1174-20130828|12702_1 188 RADVAIKD--LTIPKGTFMAVTGANGCGKSTTFS 219
                  45666666..6899***************99765 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 2.7e-06
    TIGR03258 130 daaarlpaqlsGGqqqrvalaralvvrp...dvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde 202
                      ++   lsGGq+ +  + r+l +rp   d+ll+de ++ald + +a v+ +l++       + v+y t  r++
  MMETSP1174-20130828|12702_1 338 TEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTDHRHD 413
                  555666778******************7222589*********************999888888888888765554 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.091       7.3       2      23 ..     197     218 ..     196     236 .. 0.84
   2 !   23.6   0.0   9.3e-08   7.5e-06      96     172 ..     329     408 ..     299     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.091
    TIGR03771   2 svdkGellgllGpnGaGkttll 23 
                  ++ kG ++++ G nG Gk+t +
  MMETSP1174-20130828|12702_1 197 TIPKGTFMAVTGANGCGKSTTF 218
                  5679**************9965 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 9.3e-08
    TIGR03771  96 dalervklteladrpvGelsGGqrqrvlvaralavkp...slllldepftGldlpsqellvelfeelagegtailmtthd 172
                  + l+  +lt  +d   G lsGGqr +    r+l ++p    lll+de f+ ld  s+ l+   ++  +g  t++l+  h 
  MMETSP1174-20130828|12702_1 329 AKLNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHT 408
                  5567778888889999******************99633369************9*999999999999999999998775 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.8   3.1e+02     214     244 ..      94     124 ..      68     127 .. 0.54
   2 !    8.0   0.0     0.002      0.16     499     528 ..     195     222 ..     181     224 .. 0.85
   3 !   17.7   0.0   2.2e-06   0.00018     607     672 ..     336     407 ..     313     415 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.8
    TIGR00958 214 SsllaglrgGsfeyamarinlriredlfksl 244
                    l+a+++gG    +   +n+r+ ed + +l
  MMETSP1174-20130828|12702_1  94 VVLAAFMEGGAMAATDVWVNSRVVEDCIDTL 124
                  3345566666666666666666666666555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.002
    TIGR00958 499 dLtftlepGevvalVGPsGsGKStvaalle 528
                  d  +t+  G+ +a+ G +G GKSt  +ll 
  MMETSP1174-20130828|12702_1 195 D--LTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  4..47899*******************996 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 2.2e-06
    TIGR00958 607 ydtevgekGsqlsgGqkqriAiARALvrk...PrvLiLDeAtSALDaeveqllqe...sksaksrtvlliah 672
                    te ++    lsgGq+ +    R L+ +   P +L++De  +ALD e+++l+ +    k+ +s tvl+i h
  MMETSP1174-20130828|12702_1 336 LTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTqlnRKCGSSTTVLVIYH 407
                  556667766789*************9876233579*****************99866567778999999998 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00032     0.026      16      56 ..     190     228 ..     183     241 .. 0.83
   2 !   14.8   0.0   4.7e-05    0.0038     123     200 ..     331     411 ..     298     424 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00032
    TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekps 56 
                  ++a++++t  i+kG ++ ++G  G+Gkst + l+++ + +s
  MMETSP1174-20130828|12702_1 190 DVAIKDLT--IPKGTFMAVTGANGCGKSTTFSLLSASACSS 228
                  55666665..89*********************99877655 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.7e-05
    TIGR00960 123 lekvGlkdkakalPvqlsgGeqqrvaiaravvnk...PallladePtgnlddelsrdilelleevnraGttvlvathdenl 200
                  l+   l+  + +   +lsgG++ + +  r+++ +   P lll de  + ld+e    +   l++     ttvlv  h  + 
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTDHR 411
                  5556677788888899***************987222579*************9999999999999999*****9998765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0013       0.1      25      47 ..     195     217 ..     184     227 .. 0.87
   2 !   17.3   0.0   5.1e-06   0.00041     125     199 ..     331     407 ..     328     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0013
    TIGR02314  25 slfvpkgqifgvigasgagkstl 47 
                  +l +pkg+ + v ga g gkst 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTT 217
                  588******************96 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 5.1e-06
    TIGR02314 125 lalvglsdkkdsypsnlsggqkqrvaiaralase...pkvllcdeatsaldpattqsilellkeinrrlg..ltillith 199
                  l +  l+  +d +   lsggq+ +    r+l      p +ll de  +aldp +   +     ++nr+ g   t+l+i h
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVR---TQLNRKCGssTTVLVIYH 407
                  56778999**********************9765122679************8765444...456777653267777777 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.006      0.48      28      54 ..     195     221 ..     183     233 .. 0.85
   2 !   16.3   0.0   1.3e-05    0.0011     148     216 ..     345     416 ..     311     424 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.006
    TIGR02324  28 sleveaGelvalsGksGaGkstllksl 54 
                  +l++ +G ++a++G+ G Gkst +  l
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  58999*****************88665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.3e-05
    TIGR02324 148 atfsGGekqRvniaralia..drPi.LLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelva 216
                   t sGG + + +  r+l+   d P  LL+de  a+Ld   ++ v+  ++++  + ++++ i+h ++ ++  +
  MMETSP1174-20130828|12702_1 345 GTLSGGQRSKSDFIRTLLLrpDCPDlLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHTDHRHDETS 416
                  589************998633667615569*********************************988766555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00076     0.061      25      53 ..     195     223 ..     183     232 .. 0.87
   2 !   13.1   0.0   0.00014     0.011     131     201 ..     336     408 ..     328     421 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00076
    TIGR02211  25 sleiekgelvaivGssGsGkstllhllgg 53 
                  +l i kg  +a++G+ G Gkst + ll++
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  7999*********************9987 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00014
    TIGR02211 131 lekrinkkpselsGGerqrvaiaralvnkP...klvladePtgnldkktakkifelllelnkekntallvvthd 201
                  l    ++  + lsGG+r +    r+l+ +P   +l+l de  + ld ++   + + l++ +  + t++lv+ h 
  MMETSP1174-20130828|12702_1 336 LTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNR-KCGSSTTVLVIYHT 408
                  55566677899***************987611157***********9987766554443.33345566666664 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0042      0.34      21      49 ..     194     222 ..     181     231 .. 0.83
   2 !   15.0   0.0     4e-05    0.0032     128     200 ..     331     407 ..     307     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0042
    TIGR03411  21 lslsveegelrviiGpnGaGkttllDvit 49 
                   +l++ +g + ++ G+nG Gk+t + +++
  MMETSP1174-20130828|12702_1 194 KDLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  47899******************987765 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4e-05
    TIGR03411 128 leligLeekadkkaglLshGqkqwLe.igmllv..qepkllllDePvaGmtdeetekt.aellkelakersvvvveh 200
                  l++ +L++++d+  g+Ls Gq+   + i  ll+  + p+lll+De  a +  e ++ + ++l ++  ++++v+v+ h
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDfIRTLLLrpDCPDLLLVDEGFAALDPESKALVrTQLNRKCGSSTTVLVIYH 407
                  66778999*************98776333333312569************988887662677788889999****99 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.094       7.5      17      44 ..     195     222 ..     181     228 .. 0.78
   2 !   19.3   0.0   1.5e-06   0.00012     129     176 ..     344     394 ..     329     418 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.094
    TIGR02142  17 dlelpgkgvtalFGrsGsGktslirlia 44 
                  dl++p    +a+ G+ G+Gk++   l++
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  688898899************9887765 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.5e-06
    TIGR02142 129 pgkLsGGekqRvaigRAlLss...PeLLlmDePLaaLDekrkkeilPyLer 176
                   g+LsGG + +    R lL +   P+LLl+De  aaLD ++k+ +   L+r
  MMETSP1174-20130828|12702_1 344 HGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNR 394
                  689****************8722357**************99887666655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.69        56      21      46 ..     196     221 ..     191     226 .. 0.86
   2 !   21.2   0.0   3.7e-07     3e-05     131     205 ..     331     407 ..     328     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.69
    TIGR03005  21 levaaGekvaliGpsGsGkstilril 46 
                  l++ +G  +a+ G  G Gkst + +l
  MMETSP1174-20130828|12702_1 196 LTIPKGTFMAVTGANGCGKSTTFSLL 221
                  67889999*************98776 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 3.7e-07
    TIGR03005 131 ldmvGladkadalpaqlsGGqkqrvaiaralalrp...kvllfdevtsaldpelveevlnvlrrlasetdltmllvth 205
                  l++  l+  +d++   lsGGq+ +    r+l lrp    +ll de  +aldpe    v + l r +     t+l++ h
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSS-TTVLVIYH 407
                  7788899999***********************9733368*************9888887777766543.45555555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.61        49       2      17 ..     207     222 ..     206     229 .. 0.86
   2 !   18.1   0.0   2.9e-06   0.00024      85     149 ..     331     395 ..     328     419 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.61
    TIGR01187   2 LGpsGsGkttlLrlla 17 
                   G+ G+Gk+t + ll+
  MMETSP1174-20130828|12702_1 207 TGANGCGKSTTFSLLS 222
                  599*******999986 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.9e-06
    TIGR01187  85 LelvqleefakrkpsqlsGGqrqrvalaravvkkP...kiLLlDeplsaLDkkLrdqmqlelkalqek 149
                  L++  l++  +     lsGGqr +  + r++  +P   ++LL+De ++aLD + +  +++ l++   k
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNR---K 395
                  5666777777888889****************98633379***********9988887776643...3 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0013       0.1      31      57 ..     195     221 ..     181     226 .. 0.84
   2 !    9.1   0.0    0.0022      0.18     148     209 ..     344     407 ..     330     417 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0013
    TIGR02769  31 slsleeGetvallGrsGaGkstlarll 57 
                  +l++ +G  +a+ G  G+Gkst   ll
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  799******************976665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0022
    TIGR02769 148 PrqlsGGqlqriniaralaveP...klivldeavsnldlvlqasilellkklkqefGlaylfith 209
                     lsGGq  +    r+l ++P    l+++de  + ld   +a +  +l++ k  + +++l+i h
  MMETSP1174-20130828|12702_1 344 HGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNR-KCGSSTTVLVIYH 407
                  5679***************9863337***************9999998876.4455566666666 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0025       0.2      20      47 ..     195     222 ..     178     232 .. 0.82
   2 !    9.8   0.0    0.0013       0.1     126     165 ..     341     383 ..     332     410 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0025
    TIGR03410  20 slevekgevvavlGrngvGkttllkalv 47 
                  +l+++kg  +av G ng Gk+t +  l 
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  68999*****************887655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.0013
    TIGR03410 126 kRrgGdLsGGqqqqlaiaRaLvteP...klllLDePteGiqPs 165
                  +   G LsGGq+ +    R+L+ +P    lll+De    + P 
  MMETSP1174-20130828|12702_1 341 DNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPE 383
                  55679*****************996222689***987777775 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0028      0.22      49      74 ..     199     224 ..     196     241 .. 0.80
   2 !    9.5   0.0   0.00084     0.068     160     224 ..     340     407 ..     328     410 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0028
    TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafr 74 
                   +G+++Av G+ G GK+T ++ l+  
  MMETSP1174-20130828|12702_1 199 PKGTFMAVTGANGCGKSTTFSLLSAS 224
                  579***************88777654 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00084
    TIGR00955 160 vpgrvkglSgGerkRlalasell...tdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiH 224
                  +++ + +lSgG+r +  +   ll    +P lL++DE  + LD  s a v   L++ + + +tv++  H
  MMETSP1174-20130828|12702_1 340 QDNWHGTLSGGQRSKSDFIRTLLlrpDCPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYH 407
                  4566678************99995555789***************9999999***9*99999999887 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.41        33      40      66 ..     191     217 ..     187     226 .. 0.86
   2 !   15.8   0.0   1.4e-05    0.0011     148     203 ..     330     392 ..     327     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.41
    TIGR03415  40 vadasldveeGeilvlmGlsGsGkssl 66 
                  va   l++ +G  + + G  G Gks+ 
  MMETSP1174-20130828|12702_1 191 VAIKDLTIPKGTFMAVTGANGCGKSTT 217
                  566689*******************85 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.4e-05
    TIGR03415 148 qlelvglaeWadkkvgelsGGmqqrvGlarafatea...dillmdePfsaldP....lirakl 203
                  +l++  l+  +d+  g lsGG + +  + r + +     d+ll+de f+aldP    l+r++l
  MMETSP1174-20130828|12702_1 330 KLNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPeskaLVRTQL 392
                  7899999************************98864223699**********97777888887 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.5   1.2e+02     189     267 ..      38     112 ..      10     157 .. 0.73
   2 ?    4.6   0.0     0.025         2     338     364 ..     195     221 ..     174     233 .. 0.85
   3 !   10.9   0.0   0.00032     0.026     453     512 ..     345     407 ..     337     415 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.5
    TIGR01842 189 naeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilv 267
                    + i+  g ++  ++rW  l++ka + ++    +a+ l+++  ++  +  s +l +G  +++   + +G++ a+ + v
  MMETSP1174-20130828|12702_1  38 HEQQIRLAGGVEFTRERWVGLSRKANHLKA----TASLLETVRSFINWLYWSDILKVGIEVVLAAFMEGGAMAATDVWV 112
                  555555555555566666665555444443....455677777778888889999999999999999999999987755 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.025
    TIGR01842 338 sfalkaGealaiiGpsgsGkssLarll 364
                  ++++ +G ++a+ G+ g Gks+   ll
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  5899*****************976655 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00032
    TIGR01842 453 aaLsgGqrqRiaLaRalygd...PklvvLDePnanLDeeGeqalakalkelkarkitvvvith 512
                   +LsgGqr +    R l      P l+++De  a LD e  + +++ l++     +tv+vi h
  MMETSP1174-20130828|12702_1 345 GTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYH 407
                  58**************9976222689*************987777777777777888888877 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.053       4.2      24      50 ..     195     221 ..     167     232 .. 0.71
   2 !   12.8   0.0   0.00012    0.0094     120     194 ..     331     408 ..     328     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.053
    TIGR01288  24 sftiaagecfgllgpngagkstiarlv 50 
                   +ti +g  + + g ng+gkst   l+
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  2478899999***********987665 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00012
    TIGR01288 120 lefarleskadvrvadlsggmkrrltlarali...ndpqllildepttgldpharhliwerlrsllargktilltthl 194
                  l+++ l +  d    +lsgg + +  + r+l+   + p+ll++de  + ldp ++ l+  +l        t+l+  h 
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLlrpDCPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIYHT 408
                  5666777788888899******99999999883434589***********************9999999999988775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00026     0.021     658     686 ..     195     223 ..     182     233 .. 0.86
   2 ?    4.7   0.0     0.011      0.86    1420    1478 ..     345     407 ..     312     415 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00026
    TIGR00957 658 tlsipegalvavvgqvgcgkssllsalla 686
                  +l+ip+g+++av g  gcgks+ +s l a
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  789******************87776644 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.011
    TIGR00957 1420 enlsvgqrqlvclarallrkt...kilvldeataavdletdnliqstirtqf.edctvltiah 1478
                     ls gqr    + r+ll +     +l++de  aa+d e+  l+++ +  +   + tvl i h
  MMETSP1174-20130828|12702_1  345 GTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCgSSTTVLVIYH 407 
                   57999******99999886641226899****************9998666515678999988 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014       1.1      24      50 ..     197     223 ..     185     242 .. 0.85
   2 !    8.2   0.0    0.0041      0.33     120     190 ..     333     407 ..     328     413 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.014
    TIGR03522  24 eaekGeivGflGPnGaGkstlmkiltg 50 
                  ++ kG  +   G nG Gkst+  +l++
  MMETSP1174-20130828|12702_1 197 TIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  6789*****************998876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0041
    TIGR03522 120 lvGlkaeqhkkigalskGyrqrvGlakallhd...PkvlildePttGldPnqlveire.vikeiakdktvilsth 190
                     l++eq    g ls G r +  + ++ll     P++l++de  + ldP+    +r  + ++ +   tv++  h
  MMETSP1174-20130828|12702_1 333 ISTLTTEQDNWHGTLSGGQRSKSDFIRTLLLRpdcPDLLLVDEGFAALDPESKALVRTqLNRKCGSSTTVLVIYH 407
                  5679999*********************9976222578************9988888515567888888887665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0063      0.51     473     520 ..     176     221 ..     169     226 .. 0.90
   2 ?    5.8   0.0     0.011      0.88     574     643 ..     302     381 ..     289     408 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0063
    TIGR01193 473 dievndvsysyGygsevledislkikknekitlvGlsGsGkstlakll 520
                  ++ + ++s+s G ++ +++d  l+i k   +++ G  G Gkst   ll
  MMETSP1174-20130828|12702_1 176 NLLIPHLSFSRGRADVAIKD--LTIPKGTFMAVTGANGCGKSTTFSLL 221
                  678899************98..689******************98887 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.011
    TIGR01193 574 envsqeeikkaveiaeikddieklplGyqtels.......eeassisgGqkqrlalarallsdskv...lildestsnld 643
                    v+++++  a  ++e+ +d++    G + ++s       +   ++sgGq+ +  + r+ll   ++   l++de  + ld
  MMETSP1174-20130828|12702_1 302 SVVDNDDVRVAQTVVELANDLNFYGDGAKLNIStltteqdNWHGTLSGGQRSKSDFIRTLLLRPDCpdlLLVDEGFAALD 381
                  567889999999999999999988888776666222111033568***************98754333399999999998 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00058     0.047     361     387 ..     195     221 ..     183     226 .. 0.89
   2 ?    2.1   0.0      0.15        12     468     531 ..     345     410 ..     327     416 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00058
    TIGR01194 361 dlriasGelvyivGenGcGkstlikll 387
                  dl+i +G ++ + G nGcGkst   ll
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  8*********************88776 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.15
    TIGR01194 468 tdlstGqrkrlalvnayl..eerp.vllldewaadqdpafkrvfyeellpdlkrrGktilvishddr 531
                    ls Gqr +  ++ + l   + p +ll+de  a  dp  k +  ++l         t+lvi h d+
  MMETSP1174-20130828|12702_1 345 GTLSGGQRSKSDFIRTLLlrPDCPdLLLVDEGFAALDPESKALVRTQLNRKC-GSSTTVLVIYHTDH 410
                  469999**999999998733355657889**************999886544.456899***99986 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00012    0.0097     466     499 ..     190     221 ..     175     224 .. 0.79
   2 ?   -1.5   0.0       1.7   1.4e+02     579     613 ..     342     379 ..     335     395 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00012
    TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRil 499
                  dv i++L   +++G+ + ++G nGcGKs  f +l
  MMETSP1174-20130828|12702_1 190 DVAIKDL--TIPKGTFMAVTGANGCGKSTTFSLL 221
                  5566665..479*****************99877 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.7
    TIGR00954 579 dWkdvLsgGekqRiamARlfyHkPk...favLDEctsA 613
                  +W+  LsgG++ +  + R +  +P      ++DE  +A
  MMETSP1174-20130828|12702_1 342 NWHGTLSGGQRSKSDFIRTLLLRPDcpdLLLVDEGFAA 379
                  8***************9999888741114566666665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0025       0.2      19      47 ..     194     222 ..     182     231 .. 0.85
   2 ?    3.0   0.0      0.19        15     109     181 ..     331     406 ..     298     412 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0025
    TIGR03740  19 vslkvkknsvygllGpnGaGkstllkllt 47 
                   +l+++k +  ++ G nG+Gkst++ ll+
  MMETSP1174-20130828|12702_1 194 KDLTIPKGTFMAVTGANGCGKSTTFSLLS 222
                  46899*******************99886 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.19
    TIGR03740 109 lkivdlentekkkakqfslGmkqrlGiaiall...nkPkllildePtnGldPlGiqelreliksfpekGitvilss 181
                  l+i  l++++ +  + +s G + +     +ll   + P+ll++de    ldP     +r  ++      +tv++  
  MMETSP1174-20130828|12702_1 331 LNISTLTTEQDNWHGTLSGGQRSKSDFIRTLLlrpDCPDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVIY 406
                  556666666666666666666666666666662223578*************988888887777777777777655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.05         4     942     978 ..     187     223 ..     168     240 .. 0.70
   2 !    7.2   0.0    0.0012     0.097    2060    2113 ..     336     392 ..     328     422 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.05
    TIGR01257 942 grpavdrlnitfyenqitaflghngagktttlsiltg 978
                  gr  v   ++t+ +    a+ g ng+gk+tt+s+l+ 
  MMETSP1174-20130828|12702_1 187 GRADVAIKDLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  5555555566666666666666666666666666654 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0012
    TIGR01257 2060 lslyadrlagtysggnkrkls...taialigcpplvlldepttgmdpqarrmlwnti 2113
                   l+   d   gt sgg++ k     t +    cp l+l+de  + +dp+++ ++   +
  MMETSP1174-20130828|12702_1  336 LTTEQDNWHGTLSGGQRSKSDfirTLLLRPDCPDLLLVDEGFAALDPESKALVRTQL 392 
                   677789999******9998651114444558*****************998776554 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.63        50      19      46 ..     194     221 ..     183     227 .. 0.80
   2 ?    9.5   0.0   0.00085     0.068     168     224 ..     346     405 ..     303     438 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.63
    TIGR03269  19 isleleeGevlGilGksGaGksvllhll 46 
                   +l++ +G  + + G  G+Gks  + ll
  MMETSP1174-20130828|12702_1 194 KDLTIPKGTFMAVTGANGCGKSTTFSLL 221
                  5788999999999999999999877776 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00085
    TIGR03269 168 dlsGGekqrvvlarqlakep...lllladeptGtldpktaklvhealkeavkeedislvl 224
                   lsGG++ +  ++r l  +p    lll de   +ldp++  lv   l++   ++   lv+
  MMETSP1174-20130828|12702_1 346 TLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTVLVI 405
                  69************99877522167**********************9998877776666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011      0.86      21      49 ..     195     223 ..     184     232 .. 0.88
   2 ?    3.6   0.0     0.048       3.9     395     456 ..     338     402 ..     305     408 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.011
    TIGR02633  21 dlklraGeivslcGenGaGkstlmkvlsg 49 
                  dl++  G  +++ G nG+Gkst + +ls+
  MMETSP1174-20130828|12702_1 195 DLTIPKGTFMAVTGANGCGKSTTFSLLSA 223
                  688999******************99987 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.048
    TIGR02633 395 aspdlpiarlsGGnqqkavlakllllnp...rvlildeptrGvdvGakyeiyklinqlaqeGvai 456
                  ++ d   ++lsGG++ k+ + + lll+p    +l++de    +d  +k+ +   +n+ +    ++
  MMETSP1174-20130828|12702_1 338 TEQDNWHGTLSGGQRSKSDFIRTLLLRPdcpDLLLVDEGFAALDPESKALVRTQLNRKCGSSTTV 402
                  445556789*****************9722268999**999999888887766666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                        51  (0.012433); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              51  [number of targets reported over threshold]
# CPU time: 0.81u 0.18s 00:00:00.99 Elapsed: 00:00:00.66
# Mc/sec: 955.92
//
Query:       MMETSP1174-20130828|12710_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1174-20130828|12709_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   71.3   0.5    2.6e-06   24.2   0.0    3.2  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    3.7e-17   60.1   0.0    1.7e-10   38.1   0.0    2.5  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.5e-12   44.9   0.1    0.00055   16.7   0.1    3.1  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      9e-11   39.2   0.1    5.9e-05   20.0   0.1    3.5  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    2.9e-08   31.6   5.9      8e-08   30.1   1.7    2.4  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    2.1e-05   21.6   0.8    3.8e-05   20.7   0.5    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0001   19.1   0.0      0.036   10.7   0.0    2.2  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    0.00011   19.3   0.4    0.00019   18.4   0.3    1.4  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00027   18.2   1.8    0.00044   17.5   1.3    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00054   16.6   0.2    0.00083   15.9   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    0.00069   16.6   0.4      0.003   14.5   0.1    1.9  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00095   15.9   1.5     0.0015   15.3   1.1    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.001   15.7   0.5     0.0015   15.1   0.3    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
     0.0011   15.2   0.2     0.0018   14.6   0.2    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0088   12.9   0.7      0.014   12.3   0.5    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
  ------ inclusion threshold ------
      0.012   12.4   2.1       0.21    8.4   0.4    2.3  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.014   12.4   0.1      0.045   10.7   0.2    1.7  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.016   11.9   0.2       0.34    7.5   0.0    2.1  2  TIGR03452 mycothione_red: mycothione reductase
      0.019   11.5   0.7       0.03   10.8   0.5    1.2  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.051   10.1   0.9      0.072    9.6   0.3    1.5  2  TIGR01813 flavo_cyto_c: flavocytochrome c
       0.06   10.0   0.9      0.078    9.6   0.1    1.5  2  TIGR02730 carot_isom: carotene isomerase


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   2.5e-07   4.8e-05       1      56 [.     158     212 ..     158     232 .. 0.92
   2 !   23.6   0.0     2e-08   3.9e-06     112     194 ..     285     366 ..     270     378 .. 0.76
   3 !   24.2   0.0   1.3e-08   2.6e-06     298     363 ..     512     576 ..     498     586 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.5e-07
    TIGR03219   1 lrvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraiegl 56 
                  lrv i GGG+aG+  a+  ++   ++v +fe a +++  G  +   +na+rai+++
  MMETSP1174-20130828|12709_1 158 LRVVIAGGGLAGLVTAA-ACHAKGMKVAVFEQASKYAPYGGPIQIQSNALRAIQRI 212
                  799*********98876.589999*****************************986 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 2e-08
    TIGR03219 112 lkklpegiakfgkkaksiee..qaeevevsfedGteyradlligadGiksalrdyvlegagqaaveprfsGtsayrGlvdsaelr 194
                   + +p g  +++ +++++e+  +++ ve +++dGt+  ad+l+gadGi s++r+ v++g g       f+ + a  G vd ae r
  MMETSP1174-20130828|12709_1 285 KHGVPSGAVHIKSRIVNYEDrgNGDGVEATLDDGTKVYADVLVGADGIWSSVRK-VMHGLGDG--AGGFAASGAAGGAVDDAEAR 366
                  34589999999999999987225689***************************7.55555443..34555555666666666655 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 1.3e-08
    TIGR03219 298 vhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvq 363
                   +G va+ Gdaah m+p  G G  q  ed y l + l   +++ +   + l+ y   r  r++ +q
  MMETSP1174-20130828|12709_1 512 SDGPVAICGDAAHPMMPNLGQGGCQSTEDGYRLVEELSTVRHTRDTS-AALSSYSRKRIIRTSIIQ 576
                  6799********************************99888876555.555667777776666665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   8.7e-13   1.7e-10       2     171 ..     160     340 ..     159     342 .. 0.76
   2 !   19.2   0.0     5e-07   9.8e-05     280     346 ..     516     579 ..     510     588 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 8.7e-13
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaekaksp...afdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskg.......alefda....aevgaeaLgyvvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqaa 171
                  +vI+GgGl+Gl++A+a  +++ +kva++e++   +++       +n   A++    + +e++ +  ++ ++r++ ++  +   ++ +g        ++fd     +e+g++   +vv+  v+qq Ll+    +   v ++ ++   e + + d ve tl+dg++++a++lvgADG  S vr+ +
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKG-MKVAVFEQASKYAPYGGpiqIQSNALRAIQRINPKCFEELCAAGTVTADRVSGLKIGYRRGNKLAGlfgkgdwLVRFDTlgpaQEAGLP-PTVVVDRPVIQQILLKHGVPSG-AVHIKSRIVNYEDRGNGDGVEATLDDGTKVYADVLVGADGIWSSVRKVM 340
                  8*****************888.********99888444423355666778888999******9999999977776654444444433389999999999862111333333.36899999******99988776.355555555555555599****************************986 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 5e-07
    TIGR01988 280 valiGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaat 346
                  va++GdAAh + P  GQG    ++D  +L+e l++ + + +d   +a+L+ Y+r+r   + +++++ 
  MMETSP1174-20130828|12709_1 516 VAICGDAAHPMMPNLGQGGCQSTEDGYRLVEELSTVRHT-RDT--SAALSSYSRKRIIRTSIIQGFA 579
                  899*******************************86555.455..599********98888877765 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.8e-06   0.00055       2      36 ..     160     193 ..     159     209 .. 0.88
   2 !   12.0   0.0   7.2e-05     0.014     101     168 ..     273     340 ..     270     342 .. 0.73
   3 !   12.3   0.0   6.1e-05     0.012     278     332 ..     516     570 ..     511     587 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.8e-06
    TIGR01984   2 viivGgglvGlslAlaLsrksklkialieaksaea 36 
                  v+i Gggl+Gl++A a ++k+ +k+a++e+ s  a
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKG-MKVAVFEQASKYA 193
                  89*******************.*******987655 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7.2e-05
    TIGR01984 101 Vveladlkqallkrlaekkkiklyapaelkeierekde..aevkldneqkleakLlvaAdGanskvresl 168
                  Vv+   ++q+llk+     ++  +  +++ ++e + +   +e +ld+++k+ a++lv AdG  s vr+ +
  MMETSP1174-20130828|12709_1 273 VVDRPVIQQILLKHGVPSGAV--HIKSRIVNYEDRGNGdgVEATLDDGTKVYADVLVGADGIWSSVRKVM 340
                  555666677777744444444..4457777777665544499999*********************9976 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 6.1e-05
    TIGR01984 278 vvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerke 332
                  v++ g+aA+ + P  gQG  ++  D   L+e l++ r+   ++a+l  y+++r  
  MMETSP1174-20130828|12709_1 516 VAICGDAAHPMMPNLGQGGCQSTEDGYRLVEELSTVRHTRDTSAALSSYSRKRII 570
                  7899*********************************9999**********9965 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   2.4e+02     289     314 ..      68      96 ..      22     101 .. 0.73
   2 !   20.0   0.1     3e-07   5.9e-05       3     189 ..     160     340 ..     158     343 .. 0.77
   3 !   13.0   0.0     4e-05    0.0078     335     390 ..     516     568 ..     511     583 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.2
    TIGR01989 289 nedikfrte...erkseeqvPPkvievvd 314
                  + di++ +e   ++++++++PP+v +v+d
  MMETSP1174-20130828|12709_1  68 KLDIPWLSEgegSKDNRVNIPPHVRRVLD 96 
                  3456677667778889999*****99987 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 3e-07
    TIGR01989   3 vvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhiekdR.......ikkfkklqvwdscskalieferkdvkeela....fiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaa 189
                  vvi+GgGl+Gl  Aaa +     k  kv + +   a k +   y  + +  sn + +i+    + f+++ a  +++ dR       ++  +kl    + ++ l++f+    ++e +    ++++  vi++ ll++   +      v++k+++ +++        n   v+ +l+dg++ ++++l+GADG  S vRk++
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACH----AKGMKVAVFEQ--ASKYA--PYGGPIQIQSNALRAIQRINPKCFEELCAAGTVTADRvsglkigYRRGNKLAGLFGKGDWLVRFDTLGPAQEAGlpptVVVDRPVIQQILLKHGVPSG----AVHIKSRIVNYE-----DRGNGDGVEATLDDGTKVYADVLVGADGIWSSVRKVM 340
                  89************9975....5789*****99..55554..599*********************************93333333345578888999999999999865544433112267777777777766544444....555555655544.....457888999**************************87 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 4e-05
    TIGR01989 335 vALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyerer 390
                  vA++GDAAH + P  GqG     +D   Lv+ l++ v++  d   +  L++y r+r
  MMETSP1174-20130828|12709_1 516 VAICGDAAHPMMPNLGQGGCQSTEDGYRLVEELST-VRHTRDT--SAALSSYSRKR 568
                  8******************************9986.6666664..45566666666 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.7   4.1e-10     8e-08       3     156 ..     160     341 ..     159     353 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.1e-10
    TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelelpk...................elivnevr.................kariispngekveieee........eeealvidRkefDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklg 156
                  vv+ G+G aG  +A+    kG++V+++e++  +++ + gg ++ +++    ++                    +                        k++ ++ +                  ++++v+dR +  + L+++   +ga  +++ ++++ e +++ + ve+  d+  +v+a++++gAdG  s v+k + 
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQA--SKYAPYGGPIQIQSNALRAIQRinpkcfeelcaagtvtadrV------SglkigyrrgnklaglfgKGDWLVRFD-------TlgpaqeagLPPTVVVDRPVIQQILLKHGVPSGAV-HIKSRIVNYEDRGNGDGVEATLDDGTKVYADVLVGADGIWSSVRKVMH 341
                  8****************************9..789999**9999988888887788888887766654444330......144444444544333333333333333.......1455555567899********************98.888888887777766555555556799*****************9875 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.5     2e-07   3.8e-05       2      35 ..     160     193 ..     159     208 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2e-07
    TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdekla 35 
                  v++ G+G+Ag+++a ++ ++G++v ++e+++k a
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQASKYA 193
                  8999*************************99877 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0     0.005      0.98       4      36 ..     159     191 ..     157     196 .. 0.92
   2 !   10.7   0.0   0.00019     0.036     277     349 ..     512     585 ..     505     594 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.005
    TIGR02360   4 qvaiigaGpsGlllgqllhkaGidavilerksr 36 
                  +v+i g+G +Gl+ +  +h +G+++ ++e+ s+
  MMETSP1174-20130828|12709_1 159 RVVIAGGGLAGLVTAAACHAKGMKVAVFEQASK 191
                  799**************************9875 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00019
    TIGR02360 277 ryGrlflaGdaahivpptGakGlnlaasdvaylyealleaykekd.saglerysakalarvwkaerfswwltsl 349
                  + G + ++Gdaah + p   +G   ++ d + l e l    + +d sa+l +ys k + r    + f+   + l
  MMETSP1174-20130828|12709_1 512 SDGPVAICGDAAHPMMPNLGQGGCQSTEDGYRLVEELSTVRHTRDtSAALSSYSRKRIIRTSIIQGFAQLGSDL 585
                  5677889******888888888888999*******99987776652789*******999987777776655555 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   9.8e-07   0.00019       2      34 ..     159     191 ..     158     200 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.8e-07
    TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssr 34 
                  +vv+ G+G+ Gl +A+a +++G+kV+v+e++s+
  MMETSP1174-20130828|12709_1 159 RVVIAGGGLAGLVTAAACHAKGMKVAVFEQASK 191
                  69***************************9886 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.3   2.3e-06   0.00044       1      31 [.     160     190 ..     160     199 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.3e-06
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31 
                  vv+ GgGlAGL  A++  ++G++v ++E + 
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQAS 190
                  89**************************986 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   4.2e-06   0.00083       3      35 ..     159     191 ..     157     200 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.2e-06
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaq 35 
                  +vv+ G+G+aGl +aa   ++G++v ++e+a++
  MMETSP1174-20130828|12709_1 159 RVVIAGGGLAGLVTAAACHAKGMKVAVFEQASK 191
                  69999*************************976 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.5e-05     0.003       1      30 [.     160     189 ..     160     195 .. 0.92
   2 ?   -0.9   0.0      0.74   1.5e+02     154     208 ..     280     335 ..     268     340 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-05
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd 30 
                  v+++GgG+ Gl++A     +g+kv+++e++
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQA 189
                  789*************************97 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.74
    TIGR02352 154 lkaLvkaleklGve.iieevevqeieargekvtavktssekvqadqvvlaaGawak 208
                   + L+k+   +G+  i++++   e + +g+ v a+  +  kv ad +v a G+w++
  MMETSP1174-20130828|12709_1 280 QQILLKHGVPSGAVhIKSRIVNYEDRGNGDGVEATLDDGTKVYADVLVGADGIWSS 335
                  55555555455544033434444445566677777777779*************96 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.1   7.6e-06    0.0015       1      33 [.     160     192 ..     160     194 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 7.6e-06
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                  v+i GgG aGl++A+++ ++g kV+++E+++k 
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQASKY 192
                  7999*************************9886 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   7.8e-06    0.0015       1      32 [.     160     191 ..     160     206 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.8e-06
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                  +v+ G+Gl+GL +A+   a+G++v v+e+ +k
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQASK 191
                  5778*************************987 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2     9e-06    0.0018     376     420 ..     154     201 ..     143     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 9e-06
    TIGR03997 376 arrrkkvlvvGgGPaGleaaataarrGhrvtllereee...lGGqvkl 420
                  a+++ +v+++GgG aGl  aa   ++G +v ++e++++    GG +++
  MMETSP1174-20130828|12709_1 154 AEEPLRVVIAGGGLAGLVTAAACHAKGMKVAVFEQASKyapYGGPIQI 201
                  445579****************************99862224776665 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.5     7e-05     0.014       3      31 ..     160     188 ..     158     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-05
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaiiaa 31 
                  v+i GgGlaGl +a ++  +G+k+a+  +
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQ 188
                  7999*********************9876 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0011      0.21       2      43 ..     159     199 ..     158     205 .. 0.93
   2 ?    3.0   0.0     0.046         9      89     161 ..     274     340 ..     271     348 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0011
    TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGai 43 
                  +v++ Ggg +G   a     +g++v+++e++ ++  P GG i
  MMETSP1174-20130828|12709_1 159 RVVIAGGGLAGLVTAAACHAKGMKVAVFEQA-SKYAPYGGPI 199
                  8**********999999999***********.********88 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.046
    TIGR02023  89 vrrevfDeyLreraqkaGaeliegllkklerdedkltleyrekekeageekksveadvviGaDGakskvakel 161
                  v+r v+ + L ++ + +Ga  i++ + + e   +   +e +       ++ + v adv +GaDG  s+v k +
  MMETSP1174-20130828|12709_1 274 VDRPVIQQILLKHGVPSGAVHIKSRIVNYEDRGNGDGVEAT------LDDGTKVYADVLVGADGIWSSVRKVM 340
                  77777777777777777777777777776666664444443......23345589************998765 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00023     0.045       2      33 ..     160     191 ..     159     198 .. 0.88
   2 ?   -2.6   0.0       2.6     5e+02     262     348 ..     515     602 ..     509     609 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00023
    TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaapk 33 
                  +++ GgGlAgl+ A++  ++g++v + e a k
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQASK 191
                  6899*********************9997655 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.6
    TIGR01790 262 kvvavGaaAglvHPatgYsvaralseApklaaaiaqalalsselataawkslwreerrrqry...frllglelllaleeeelrrvfqrFf 348
                  +v+++G aA  + P  g   +++ ++  +l + +      +  +  aa++s+ r++  r+     f +lg +ll+ ++   +  ++  Ff
  MMETSP1174-20130828|12709_1 515 PVAICGDAAHPMMPNLGQGGCQSTEDGYRLVEEL--STVRHTRDTSAALSSYSRKRIIRTSIiqgFAQLGSDLLVDFDLMMTIPILGPFF 602
                  5677777777777777777777777777777777..344455566677888888887777542226788999999999888888888887 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.078        15     166     202 ..     154     190 ..     151     195 .. 0.90
   2 ?    7.5   0.0    0.0017      0.34     228     264 ..     295     333 ..     282     353 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.078
    TIGR03452 166 pelpeslvivGgGyialefahvfsalGtkvtlvarse 202
                  +e p ++vi GgG+  l  a+  +a G+kv++  +++
  MMETSP1174-20130828|12709_1 154 AEEPLRVVIAGGGLAGLVTAAACHAKGMKVAVFEQAS 190
                  57899**************************988765 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0017
    TIGR03452 228 lgrnvtaaeq..dddgvtlelddGstveadvllvatGrv 264
                   ++ +++ e+  ++dgv  +lddG++v advl+ a G  
  MMETSP1174-20130828|12709_1 295 IKSRIVNYEDrgNGDGVEATLDDGTKVYADVLVGADGIW 333
                  4555555554115677****************9998865 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00015      0.03       3      33 ..     159     189 ..     155     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
    TIGR01350   3 dvvviGgGpgGYvaAiraaqlglkvalveke 33 
                   vv+ GgG +G v+A  +  +g+kva+ e+ 
  MMETSP1174-20130828|12709_1 159 RVVIAGGGLAGLVTAAACHAKGMKVAVFEQA 189
                  5899999999999999999999999999984 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00037     0.072       2      38 ..     160     198 ..     159     211 .. 0.77
   2 ?   -3.6   0.0       3.9   7.5e+02     266     282 ..     538     554 ..     531     569 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00037
    TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvle...KapviGGN 38 
                  vv+ G GlAGl +a + +++g ++v v e   K + +GG 
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKG-MKVAVFEqasKYAPYGGP 198
                  9********************.999999823334455665 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.9
    TIGR01813 266 pkdGeRFvnElatRdtv 282
                  ++dG R v+El+t + +
  MMETSP1174-20130828|12709_1 538 TEDGYRLVEELSTVRHT 554
                  47999*****9863332 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0004     0.078       3      31 ..     160     188 ..     158     200 .. 0.88
   2 ?   -3.4   0.0       3.4   6.6e+02     258     291 ..     306     339 ..     290     341 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0004
    TIGR02730   3 aivigsgigglvtatqlaakgakvlvlek 31 
                  +++ g g+ glvta+   akg+kv v+e+
  MMETSP1174-20130828|12709_1 160 VVIAGGGLAGLVTAAACHAKGMKVAVFEQ 188
                  67889*********************996 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.4
    TIGR02730 258 endkavgvkladgekirakrivsnatrwdtfgkl 291
                   n+  v   l dg k++a  +v     w +  k+
  MMETSP1174-20130828|12709_1 306 GNGDGVEATLDDGTKVYADVLVGADGIWSSVRKV 339
                  46677778899*******9999999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.68u 0.19s 00:00:00.87 Elapsed: 00:00:00.86
# Mc/sec: 954.62
//
Query:       MMETSP1174-20130828|12714_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1174-20130828|12712_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 570.85
//
Query:       MMETSP1174-20130828|12717_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|12707_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   17.8  66.5    0.00029   17.8  46.1    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
  ------ inclusion threshold ------
        4.7    3.2  10.5        5.8    2.9   7.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3  27.0   0.00042      0.85       8      57 ..     203     250 ..     186     251 .. 0.55
   2 !   17.8  46.1   1.4e-07   0.00029       1     104 [.     227     330 ..     227     338 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00042
    TIGR01622   8 eRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdr.rdrdrd 57 
                  +R+R    ++drd er+  r+r+Rd +rdR+r+r+k+rdrd +r +drdrd
  MMETSP1174-20130828|12707_1 203 GRHRT---DRDRDWEREGYRDRDRDNDRDRDRERDKDRDRDRERaKDRDRD 250
                  45554...4445555555555555555555555555555544444555555 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.4e-07
    TIGR01622   1 rkrdrereRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrr.edevrr.krkeredrrerrek 104
                  r rdrer+++Rd++re+ +dr+rdk+r ++Rdr+rdR+++r+++rdrd d  drdrd+ rdr      r++s+ +r+   +rr+  de  +   + r +++   ++
  MMETSP1174-20130828|12707_1 227 RDRDRERDKDRDRDRERAKDRDRDKERAKDRDRDRDRDSDRDRDRDRDKDW-DRDRDRGRDRSNGGGGRKSSSSSRSSSSSRRHhADEGTSsSARSRSSKSAS-KT 330
                  679999999999999999999999999999999999999999999998777.888888888877777777776677666665330333332023333333322.22 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.3    0.0028       5.8     295     426 ..     203     333 ..      96     371 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0028
    TIGR00934 295 sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleel.drakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldsee 426
                  +  r  +++   r +++++++ + ++ +r  +++   d +     r++ ++ra+++d ++  d+ +d ++  +k+++  + + +   + +   k+ + sr++++s+r++ d+g + ++++s+ s+ +s++++e
  MMETSP1174-20130828|12707_1 203 GRHRTDRDRDWEREGYRDRDRDNDRDRDRERDKDRDRD-RERAKDRDRDKERAKDRDRDRDrDSDRDRDRDRDKDWDRDRDRGRDRSNGGGGRKSSSSSRSSSSSRRHHADEG-TSSSARSRSSKSASKTDKE 333
                  22244445555666677777665544444444444443.33444555566666666665431334455666667777776666666667777778888888888888777777.6666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 1275.89
//
Query:       MMETSP1174-20130828|12713_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-35  120.8  12.4    5.3e-35  118.9   8.6    1.7  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    6.8e-25   84.9  10.7    2.6e-12   43.3   0.1    3.2  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      1e-13   49.3   8.9    0.00011   19.7   0.0    4.6  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.4e-05   22.7  11.2      0.059   10.9   0.0    5.7  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00047   18.6   5.1       0.43    9.0   0.3    4.1  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.021   10.8   4.0       0.12    8.3   0.0    2.9  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   8.6   7.8e-38   5.3e-35      88     572 ..      55     591 ..      38     614 .. 0.79

  Alignments for each domain:
  == domain 1    score: 118.9 bits;  conditional E-value: 7.8e-38
    TIGR00990  88 aeekkstapkaaavesadelpeide..ssvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllkedPvy.....ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeil............................................etkpeklPsvtfvanylqsfraklrpagledsaelde..elgkGllqlglksleskadesyeeaarafekaldlg....elkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellld..knkfdealekfdlaielekelkpisvnvlPlinkalalfrtk.edfieaekllekalildPesdiavitlaqlllqq....ekvdealklferaaela 572
                  ++   + ap+++a  + d+ +e+d   ++ ++  + +++++ +    kG k+ +  +f+kai  +++a+++ e+  y     y nr a y    ++++ + d ta le +p+++k+ +rra  y +  + ++al++l +  l ++ +     ++ e ++    +  + e++                                              k +        ++yl++   ++r+   ++ a++ e  e  +  l l++ +    ++  y+ a + ++kal+ +      ++ +a  l   G+f+ +  + e a+a    +   dP   +  +k+a + l+++d d ae  f +a  kd++ +d  yhr+ql ++k +f + ++d   ++  dp++ ++ i+l++l    +s + s      a+ + p +P++y   +e+ l     ++deal +f+ ai+le+       n l  + kal l+++k  d   a   lekal +dP +  a + la l+l      e+    + ++e aa+  
  MMETSP1174-20130828|12713_1  55 TDVSPASAPSEPA-AASDSPAEPDTtkEDEADALAAKKEEFKI-CTSKGVKYIKASQFEKAITTFTRAIEIAEELDYdvetlYNNRGAAYEKAKKFKESLTDCTAVLEANPQHIKVRKRRARIYVEQERVSEALIELCVILLTNQQQ--MKTKMHEIKISYGHNPTLHEVMvqrmqesfepnqpeniqevaervgaadlellwasrdvsklkgrmAGKVAISQLLLGYGDYLEME-KEMRFVKKDELADAVEsaEGVQKPLALYKLAFWYMTQREYQSAKDTLNKALEASkgsgLEGPDLAKLLSWVGVFEHMCYEMEAAKAHYDEARLADPDSIEVIVKQAGVSLDMNDLDGAEALFAEAEGKDPNSTDFLYHRSQLWMMKRDFVKVEQDLRACMAKDPNHTMAIIKLSCLLLNNQSPEVS-KFIDLAQEQRPSMPELYQVKGEVALSvqPPDMDEALANFEKAIQLEET------NALARVYKALTLYQMKgMDPNVAIPELEKALEMDPTCCRAYVHLAELKLGVlenlEDGAKVVAMLEGAADWC 591
                  3333444454444.34466677776114455555566666655.4689**********************999754444444*******************************************************9998876533..334455555555555555555555555555*****************************988654433333222334457888865.5778877776655543114455567899999999*****************9885563347999*********************************999****************************************************************************9887776655.4567899999************976511569***************74......678899********663688899999**********************953211133344556666666655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.7   1.5e-07   0.00011     592     689 ..      85     186 ..      79     208 .. 0.82
   2 !   43.3   0.1   3.7e-15   2.6e-12      85     242 ..     304     467 ..     268     472 .. 0.84
   3 !   28.7   0.1   9.3e-11   6.4e-08     446     561 ..     466     589 ..     462     621 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-07
    TIGR02917 592 eaadlapdspellellgraqlaakdlkkavesfkkllelqp....dsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAl 689
                  +a+++++++ ++   +g  +++a++++ka+ +f+ ++e++     d  + +    ++y+ ak+ ++ lt   + Le +p + + + + a++++e++r++eAl
  MMETSP1174-20130828|12713_1  85 DALAAKKEEFKICTSKGVKYIKASQFEKAITTFTRAIEIAEeldyDVETLYNNRGAAYEKAKKFKESLTDCTAVLEANPQHIKVRKRRARIYVEQERVSEAL 186
                  678899999999999*******************99877651111334445566789*******************************************96 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3.7e-15
    TIGR02917  85 lgyskeqvlplLarayllqgkfqkvldelekk......sslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleege 242
                   g++k  +l +La+ y+ q+++q + d+l+k+      s+l+ ++ a+ll  +g+ +    e+e+A++ + +A  ++p+s+e+ +  A ++l  n+ld+a+al +e+  +dp+ +d l  + +l +++ ++ + ++++r  ++ +pn+ +a + l+  ll+++ 
  MMETSP1174-20130828|12713_1 304 EGVQKPLALYKLAFWYMTQREYQSAKDTLNKAleaskgSGLEGPDLAKLLSWVGVFEHMCYEMEAAKAHYDEARLADPDSIEVIVKQAGVSLDMNDLDGAEALFAEAEGKDPNSTDFLYHRSQLWMMKRDFVKVEQDLRACMAKDPNHTMAIIKLSCLLLNNQS 467
                  36777789999***********98888775432222226688899*****************************************************************************************************************999886 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 9.3e-11
    TIGR02917 446 efdkalaaakklekkqpdnaslynllgaiylgkk..dlakAreafekALkiepdffpAlanLA..rldlqekniddAkqrfekvlaidpknlkallaLaelaa...rk.gneeeavallekaae 561
                  ++  + + ++  +++ p  ++ly+ +g ++l  +  d ++A ++fekA ++e  ++ A+++ A   ++++  +++ A+ ++ek+l +dp+  +a   Lael++   ++  + +++va+le aa 
  MMETSP1174-20130828|12713_1 466 QSPEVSKFIDLAQEQRPSMPELYQVKGEVALSVQppDMDEALANFEKAIQLEETNALARVYKAltLYQMKGMDPNVAIPELEKALEMDPTCCRAYVHLAELKLgvlENlEDGAKVVAMLEGAAD 589
                  55566778888999**************99987644899********************9866225778888999**************************97222334566788999998875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9   9.5e-06    0.0065     112     190 ..     107     187 ..      77     211 .. 0.83
   2 !   13.6   0.1   1.1e-05    0.0078      36      98 ..     314     383 ..     294     388 .. 0.81
   3 ?    3.0   0.0      0.02        14     144     189 ..     393     438 ..     389     451 .. 0.89
   4 !   19.7   0.0   1.6e-07   0.00011     114     180 ..     502     568 ..     496     581 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.5e-06
    TIGR02521 112 qkkyeeAeqqfeaAiedpk..YeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAra 190
                    ++e+A++ f++Aie  +   +  +  y+N g  + ka+++++  +  t  l+++p+  +  +  a++++++ ++ eA  
  MMETSP1174-20130828|12713_1 107 ASQFEKAITTFTRAIEIAEelDYDVETLYNNRGAAYEKAKKFKESLTDCTAVLEANPQHIKVRKRRARIYVEQERVSEALI 187
                  558999999999998754433677888999999999999999999999999999999999999999999999999999865 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.1e-05
    TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg.......elekAeesfrkAltlkpnn 98 
                  +La  Y+ q ++++Ak+ l+kAle+ + +      lA ++  +g       e e+A++++ +A   +p++
  MMETSP1174-20130828|12713_1 314 KLAFWYMTQREYQSAKDTLNKALEASKGSGLEGPDLAKLLSWVGvfehmcyEMEAAKAHYDEARLADPDS 383
                  7999********************9988877777777777777766666678888888888887666665 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.02
    TIGR02521 144 calkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAr 189
                  ++l+ +d + ae+ + +a  +dp++ + l+   +l + k++ ++ +
  MMETSP1174-20130828|12713_1 393 VSLDMNDLDGAEALFAEAEGKDPNSTDFLYHRSQLWMMKRDFVKVE 438
                  578999****************************999999987755 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 1.6e-07
    TIGR02521 114 kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelkl 180
                  +++eA + fe+Ai+ ++ +  ar+y+ + l ++k  d + a   l++al++dp+  ++   laelkl
  MMETSP1174-20130828|12713_1 502 DMDEALANFEKAIQLEETNALARVYKALTLYQMKGMDPNVAIPELEKALEMDPTCCRAYVHLAELKL 568
                  6899***********************************************************9986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.083        57      63     118 ..     105     126 ..      87     179 .. 0.58
   2 ?    3.1   0.0     0.023        15      85     114 ..     308     337 ..     299     345 .. 0.65
   3 !   10.9   0.0   8.6e-05     0.059      59     122 ..     357     420 ..     350     434 .. 0.86
   4 ?    1.4   0.0     0.077        52      49     126 ..     415     491 ..     413     500 .. 0.60
   5 !    8.0   0.3   0.00071      0.48      36     125 ..     505     600 ..     498     603 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.083
    TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                   +++++e+Ai ++++a  +                                   ee
  MMETSP1174-20130828|12713_1 105 IKASQFEKAITTFTRAIEIA----------------------------------EE 126
                  34455555555555555544..................................32 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.023
    TIGR02552  85 dprpvyhaaecllalgekeeAlkaLklaie 114
                  +p ++y++a  ++   e+++A+++L+ a+e
  MMETSP1174-20130828|12713_1 308 KPLALYKLAFWYMTQREYQSAKDTLNKALE 337
                  556666666666666666666666666655 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 8.6e-05
    TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                  ++  +++ e+e A a Y+ a  +d+d+ +++++ a + l +++   A++ ++ a  ++ +++ +
  MMETSP1174-20130828|12713_1 357 GVFEHMCYEMEAAKAHYDEARLADPDSIEVIVKQAGVSLDMNDLDGAEALFAEAEGKDPNSTDF 420
                  66789*******************************************9999998777777655 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.077
    TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselk 126
                  p++ ++++  +  ++++ ++ +  +   +++a d+++  ++ ++  cll+ ++  e  k+++la e   + +e  ++k
  MMETSP1174-20130828|12713_1 415 PNSTDFLYHRSQLWMMKRDFVKVEQDLRACMAKDPNHTMAIIKL-SCLLLNNQSPEVSKFIDLAQEQRPSMPELYQVK 491
                  55555555555555555555555555555655555555555544.577777777888888888877777766666665 PP

  == domain 5    score: 8.0 bits;  conditional E-value: 0.00071
    TIGR02552  36 eAeklFqlLaaldptea..kywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecll....algekeeAlkaLklaieiaeekeeysel 125
                  eA+  F+  ++l+ t+a  +   +L +  ++  + + Ai   + a+ +d+   r+++h+ae +l    +l++ ++  + L++a++++++k+e++el
  MMETSP1174-20130828|12713_1 505 EALANFEKAIQLEETNAlaRVYKALTLYQMKGMDPNVAIPELEKALEMDPTCCRAYVHLAELKLgvleNLEDGAKVVAMLEGAADWCNDKSEFKEL 600
                  555555555555555531144556666666666788899999999999999999999999977732224555566678899999999999999987 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3   0.00063      0.43       9      75 ..     101     168 ..      95     215 .. 0.92
   2 !    5.4   0.3    0.0083       5.7      37      70 ..     307     340 ..     301     377 .. 0.73
   3 ?    2.4   0.0     0.074        50      31      75 ..     413     454 ..     387     472 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00063
    TIGR02795   9 allvlkegdYakAeqaFkaFlkkYPkstlapnAqYw.lGealyakkkykdAakaflevvkkypkseka 75 
                  + +++k+ +++kA+++F++ ++   + ++  +  Y  +G a+ ++kk+k++ +   +v++++p++ k+
  MMETSP1174-20130828|12713_1 101 GVKYIKASQFEKAITTFTRAIEIAEELDYDVETLYNnRGAAYEKAKKFKESLTDCTAVLEANPQHIKV 168
                  66889******************************648**************************9886 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0083
    TIGR02795  37 lapnAqYwlGealyakkkykdAakaflevvkkyp 70 
                   +p A Y l+  ++++++y++A+++ ++++++ +
  MMETSP1174-20130828|12713_1 307 QKPLALYKLAFWYMTQREYQSAKDTLNKALEASK 340
                  5677888888888888888888888877777655 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.074
    TIGR02795  31 kYPkstlapnAqYwlGealyakkkykdAakaflevvkkypkseka 75 
                  k P+   + +  Y + +++++k+++ + ++  ++ ++k+p+++ a
  MMETSP1174-20130828|12713_1 413 KDPN---STDFLYHRSQLWMMKRDFVKVEQDLRACMAKDPNHTMA 454
                  4343...44667999999999999999999999999999998765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.016        11     285     360 ..     142     217 ..      99     263 .. 0.49
   2 ?    8.3   0.0   0.00018      0.12     446     496 ..     367     417 ..     321     440 .. 0.89
   3 ?   -0.3   0.0     0.069        47     402     473 ..     458     531 ..     442     538 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.016
    TIGR03939 285 llkrkeyaevikeyesleaegqelPeY..aqeavAdaylalrqpekAl.slyrelaqaepaknnleleekLfyAlleae 360
                  + k+k+++e   +  ++++++   P++  +++ +A  y++++++++Al +l   l +++++ +    e+k+ y ++ + 
  MMETSP1174-20130828|12713_1 142 YEKAKKFKESLTDCTAVLEAN---PQHikVRKRRARIYVEQERVSEALiELCVILLTNQQQMKTKMHEIKISYGHNPTL 217
                  333333333333333333333...3331123344444444444444431233333333333222223344444444444 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00018
    TIGR03939 446 rrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPed 496
                  ++A+  +++a+  +pds+ + ++qa + ld ++ ++aeal  +   + P++
  MMETSP1174-20130828|12713_1 367 EAAKAHYDEARLADPDSIEVIVKQAGVSLDMNDLDGAEALFAEAEGKDPNS 417
                  68999***********************************99988887766 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.069
    TIGR03939 402 vlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprr..Aeqllkkaeslepdslsaergqaeta 473
                   + l  +++ +e  k ++ + ++ P  ++l   ++ev+++   p++  A   ++ka +le+++++a++ +a t 
  MMETSP1174-20130828|12713_1 458 LSCLLLNNQSPEVSKFIDLAQEQRPSMPELYQVKGEVALSVQPPDMdeALANFEKAIQLEETNALARVYKALTL 531
                  556667888999999999999999999999999999999999886522788899************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.78
# Mc/sec: 1054.22
//
Query:       MMETSP1174-20130828|12720_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|12724_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 205.75
//
Query:       MMETSP1174-20130828|12723_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 772.38
//
Query:       MMETSP1174-20130828|12726_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.9   0.0      0.067   10.8   0.0    1.5  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.6e-05     0.067      20      48 ..       7      35 ..       3      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.6e-05
    TIGR02008 20 pddeyildaaeeeGidlpyscraGacstc 48
                 pd  +i+d ae + +++py  ra ac t 
  MMETSP1174-20130828|12726_1  7 PDVVHIIDNAETDWLQFPYWERAIACDTF 35
                 78899*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 936.70
//
Query:       MMETSP1174-20130828|12730_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 211.73
//
Query:       MMETSP1174-20130828|12731_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|12729_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 574.89
//
Query:       MMETSP1174-20130828|12727_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1139.27
//
Query:       MMETSP1174-20130828|12728_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 670.30
//
Query:       MMETSP1174-20130828|12733_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 188.08
//
Query:       MMETSP1174-20130828|12737_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 818.33
//
Query:       MMETSP1174-20130828|12734_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.66
# Mc/sec: 997.92
//
Query:       MMETSP1174-20130828|12739_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 653.81
//
Query:       MMETSP1174-20130828|12741_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1274.38
//
Query:       MMETSP1174-20130828|12740_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 1322.38
//
Query:       MMETSP1174-20130828|12742_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 570.19
//
Query:       MMETSP1174-20130828|12745_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1129.24
//
Query:       MMETSP1174-20130828|12748_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|12750_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|12751_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|12747_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    8.0  18.2       0.23    7.7  12.6    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
        0.8    7.6   4.6       0.41    8.5   0.7    2.1  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
          2    6.1  10.3        2.7    5.7   7.1    1.1  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
        2.7    4.0   7.1        2.7    4.0   4.9    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        6.3    2.9  13.2        6.9    2.8   9.1    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  12.6   0.00029      0.23      36     140 ..       8     114 ..       4     142 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00029
    TIGR01642  36 dRdrrdrrrsrrkdsRdRdrrrydsrsi..ssleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkd.dkkrslwdvkppkyeavtavqakasqvansvpg 140
                  ++ rr r  s   d+ dR+r    s +   ++ e++s  + R ++++ s s+++es+++ +++k+ ++++++k+ + +    d   ++ +  +  + +  ++  svp+
  MMETSP1174-20130828|12747_1   8 EKRRR-RLDSPSPDNTDRRRLDSPSPDNtdNEAEDSSGEKRRRKHDSPSLSLERESQKHDKKKKKKKRKKTHKKkKSRNHREDESASDVDFEQSELFQGDELEPSVPA 114
                  22222.455666666666665554443300344455556666667788888888877655555555444444440444445677777777777777888888888887 PP

>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.7    0.0005      0.41      12      23 ..     145     156 ..     144     159 .. 0.84
   2 ?   -0.2   0.1      0.28   2.3e+02      15      19 ..     172     176 ..     167     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0005
    TIGR01376  12 akgsGGAIyatg 23 
                   k++GGAI+++g
  MMETSP1174-20130828|12747_1 145 GKHKGGAISGQG 156
                  689*******96 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.28
    TIGR01376  15 sGGAI 19 
                  +GGAI
  MMETSP1174-20130828|12747_1 172 FGGAI 176
                  7***9 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.1    0.0033       2.7      26     110 ..      34     113 ..      23     124 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0033
    TIGR03927  26 vkpnryekkdiEkntellqgeetelek.elftpeeqkkikkkkkkekkeqeelkdqLfs.enatesntvkktkkqLFsseyeqtsss 110
                  + +n+ e +  Ek+  ++          +l++  e+ k +kkkkk+k +   +k+++    ++++ ++v  +  +LF+ +  ++s  
  MMETSP1174-20130828|12747_1  34 NTDNEAEDSSGEKRRRKHD-------SpSLSLERESQKHDKKKKKKKRKKTHKKKKSRNhREDESASDVDFEQSELFQGDELEPSVP 113
                  3444444444444444433.......3577777777777777777777777777777777889999999999999999988887765 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.9    0.0033       2.7     226     294 ..      25      91 ..       4     155 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0033
    TIGR00934 226 lrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees 294
                  +r+d+++ +++++++  +  +krr ++d    +l+r ++++ +k++  +k+r+k +++++++ ++++es
  MMETSP1174-20130828|12747_1  25 RRLDSPSPDNTDNEAEDSSGEKRRRKHDSPSLSLERESQKHDKKKK--KKKRKKTHKKKKSRNHREDES 91 
                  3333333333333333333344444444333333333333332222..222222222222222211111 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   9.1    0.0084       6.9     309     390 ..      25      93 ..       7     150 .. 0.42

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0084
    TIGR02442 309 Rrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqe...eeepgkddekeedekeeaeeeaesaeevalepagk 390
                  Rr ++p+ ++                +d+e ed s ek ++++ + +   e e++k+d+k++++k+++++++++++++  ++ ++
  MMETSP1174-20130828|12747_1  25 RRLDSPSPDN----------------TDNEAEDSSGEKRRRKHDSPSlslERESQKHDKKKKKKKRKKTHKKKKSRNHREDESAS 93 
                  1223333332................22222222211111111111122222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 451.16
//
Query:       MMETSP1174-20130828|12752_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 798.07
//
Query:       MMETSP1174-20130828|12757_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|12755_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1137.84
//
Query:       MMETSP1174-20130828|12761_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|12759_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.9   3.5      0.077   10.4   0.0    2.6  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.9e-05     0.077      32      85 ..      51     104 ..      42     121 .. 0.87
   2 ?    0.9   0.6     0.014        59     152     198 ..     123     169 ..     118     199 .. 0.82
   3 ?   -2.3   0.0      0.14   5.8e+02     154     190 ..     280     316 ..     274     334 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.9e-05
    TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAe 85 
                   ++ +L ++Y++  + +k k++ +  l+++p d+ ++  +A  + q+g  + A 
  MMETSP1174-20130828|12759_1  51 LAYRNLTIAYIKTWQWQKGKHACDYTLAQNPVDYLVYIRRAECFYQIGSFKYAM 104
                  5677999****************************************9877765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.014
    TIGR02521 152 ekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqt 198
                   ka k ++r+ +++++++++++e  +  l+kg   + ra+ +   +t
  MMETSP1174-20130828|12759_1 123 RKATKDMRRLHEKQRSNQRAMKETMKKTLEKGTFSKSRAAENNTRDT 169
                  6899999************************9999988876665555 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.14
    TIGR02521 154 aekyltralkidpkrpesllelaelklkkgqyaeAra 190
                   + ++++al  d + ++    ++el++   q ++A +
  MMETSP1174-20130828|12759_1 280 CKVSFQEALLDDFGFSRDEVGMKELESGIAQHMAASK 316
                  5667777777777777777777777777666655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|12760_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-101  337.5   0.0   1.2e-101  337.4   0.0    1.0  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.4   0.0  2.9e-105  1.2e-101       1     271 []       6     282 ..       6     282 .. 0.92

  Alignments for each domain:
  == domain 1    score: 337.4 bits;  conditional E-value: 2.9e-105
    TIGR00417   1 Wfeelkdk....nvaltlkvdkvLyeeksefqdvlifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.galddervdlkidDGvkflrdt.ekkfDviivDstdPvGpaetlfekefyelvkkalnedGvivaqseslllqlelikdlkrkvkevfekvelylaaiPtypsgllsfivaskn.klsnleveeerikeeaedlktkyynkeihkaafvlPkf 271
                  Wf e        +++l+++ + +L++e+s++qd+l+fe++++G+vlvlDgv+q+terDef+y+e+i+h+p++ah+npk++l++GGGDGgvlrevv+h++ve+i+++eiDe vi+ +kk++ + + + ++d+r++l+ +D  +flr   +  +DviivDs+dPvGpae+lf+ +fye ++ al+++G+i +q e ++l+l+li+ +  ++ ++f++ve+ +++iPtypsg+++f+++s + +++ ++ +++  +  + +  ++yyn++ih+aaf lP+f
  MMETSP1174-20130828|12760_1   6 WFSESAVMwpgqKMSLQVAPNGILFQERSKYQDILVFESSNYGRVLVLDGVIQLTERDEFAYQEMIVHIPMFAHQNPKHILIVGGGDGGVLREVVRHSCVERIDMCEIDEMVIDCAKKFFTTSTaTGYEDPRLNLVYSDAAEFLRAEdHAMYDVIIVDSSDPVGPAESLFKPDFYESMNAALKPGGIICTQGECIWLHLDLIRSVLTSCCDMFPTVEYAYTTIPTYPSGQIGFVLCSSDaRFNAVRLPQRAPS-PELQALLRYYNPNIHSAAFELPQF 282
                  6666655445224455555589*************************************************************************************************99887689*****************9764889*************************************************************************************99956777777777655.777889****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1007.62
//
Query:       MMETSP1174-20130828|12766_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|12769_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1174-20130828|12763_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-158  524.7   0.0   3.5e-107  356.9   0.0    2.0  2  TIGR00456 argS: arginine--tRNA ligase
     0.0019   15.1   0.0     0.0033   14.4   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
      0.039    9.9   0.0      0.054    9.4   0.0    1.1  1  TIGR00396 leuS_bact: leucine--tRNA ligase
       0.06    9.8   0.1      0.098    9.2   0.0    1.2  1  TIGR00398 metG: methionine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00456  argS: arginine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.9   0.0  3.4e-110  3.5e-107      11     418 ..      50     466 ..      40     468 .. 0.93
   2 !  165.8   0.1   2.6e-52   2.6e-49     403     569 .]     481     648 .]     477     648 .] 0.95

  Alignments for each domain:
  == domain 1    score: 356.9 bits;  conditional E-value: 3.4e-110
    TIGR00456  11 ealekagas..keseilveetpnkefgdyasniafelakelkkapkeiaeeiveklktkeiiekveaagp.finfflspqklleklikkileqkekyGskklk.kkkiviefsSaNpakplHvGHlRsaiiGdslarileflGydvlreyyvnDmGrqigllvlslekagnekknea.vkkedhalegvyveinkkleedeeleeearellvkleegdekliklwkrlvelaleeiketlkrlnvkfdefkvesesvkngklkkvledLkekglveedgalvldltefgdk...ekdvvlqksdgtslYltrDiayhlekler.gfdkliyvlgsdhklhikqlfaileklg.lekkkelehlefglvklks...lktRkGkvisldelldeaskragkvitkkkdleedekekvaeavgl 418
                  +al + +    ++++ ++ ++ ++efgdy++n+a++lak l+ +p+eia+++++ l+ ++++e  e+agp fin+ l + ++++  + ++l++ + +G   ++  +ki+++fsS+N+ak++HvGHlRs+iiGd+l+r+l+f+G+dv+r ++v+D+G+q+g+l++ l   +n ++ e+ ++ ++ +l g+y +++++++edee++ ++r+++v+l+ g+ +++ +w  l+e++  e+ + ++ l v+ +e    +es++n+ l+ ++edL e + +  +gal++ l+ f  +    + ++++k dg+++Y+ +D+a++ +++ + ++d+++yv++  ++ h++q+f++++ +g ++ + +leh+ fglv++++   +ktR+G++++l++lldea++ a k i  + +  ++e+ + a a g+
  MMETSP1174-20130828|12763_1  50 NALVESFGPdyENTNTMLGQATKPEFGDYQCNVALPLAKPLGLKPREIAQRLIDTLDISAYCEAPEIAGPgFINLRLRR-EFMSAQLGTMLKDSDRLGVPLTSkVEKIIVDFSSPNIAKEMHVGHLRSTIIGDTLSRVLAFMGHDVKRLNHVGDWGTQFGMLITHLTDTENVANGEEeQALDIGDLVGFYKQAKARYDEDEEFAARSRKAVVELQGGNPESLAAWTTLCEISRVEFAKIYDVLGVEVEER---GESFYNPLLPGMIEDLGELKETLDNGALCVMLEGFDSRdggAQPLIVRKGDGGFMYASTDLAAIRQRVTEeKADRVLYVTDIGQSTHFEQVFQVARRAGfVPSSVKLEHVPFGLVQGEDgkkFKTRAGDTVKLKDLLDEAVSMASKDIRGRSEATSEEAGETAAAAGE 466
                  4444444441344455999************************************************************.777777777777999****999989****************************************************************999988776999********************************************************************9...9**********************************988999889************************999****************************99****************99999*****************************75555555577776666 PP

  == domain 2    score: 165.8 bits;  conditional E-value: 2.6e-52
    TIGR00456 403 dleedekekvaeavglgAvryallskkrekdiefdwdealsfegntvpYiqYahaRirsilrkaeidgekeiaadllll.eekekeLvklllqfpevieeaaeerephvltnYlyelaklfssfYkackvldaeneelakaRLkllkatrkvLknaLelLgieaverm 569
                  d+ +d++ ++a+ +g+gAv+ya+ls +re+++ f+ +++l+ +gnt+pY+ Ya+aRi+ i r ++++ + +i++  ++l +++e++L+++ll+fpev+++  +++ p+ l+++l+e++++f++fY++c+v++ae +el+++R +l+  t++ L++ LelLgi +v+r+
  MMETSP1174-20130828|12763_1 481 DYLDDSAAELAKTIGIGAVKYADLSLNRESNYRFSYNKMLALNGNTAPYMLYAYARIQGIRRRSSESLDVDITDAPIILeHDAERALARQLLRFPEVLQRLERDLYPNQLCDFLFETSQKFNQFYENCPVINAETDELRASRTALCATTAQLLQKSLELLGIGVVDRL 648
                  666788999*****************************************************999999999888777776************************************************************************************9985 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.2e-06    0.0033      29      67 ..     163     201 ..     146     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-06
    TIGR00435  29 pTvYdasHlGhaRtlvvfDvlrrilqylgYdvqyvqNiT 67 
                  p +  ++H+Gh R++++ D+l r+l ++g dv+  + + 
  MMETSP1174-20130828|12763_1 163 PNIAKEMHVGHLRSTIIGDTLSRVLAFMGHDVKRLNHVG 201
                  5566789*************************9776665 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   5.3e-05     0.054      41      69 ..     166     194 ..     145     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.3e-05
    TIGR00396  41 sgalHlGHvrnYtitDvlsRykrlkgynv 69 
                  + ++H+GH+r+ +i+D lsR+    g++v
  MMETSP1174-20130828|12763_1 166 AKEMHVGHLRSTIIGDTLSRVLAFMGHDV 194
                  345*****************999999887 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   9.5e-05     0.098      13      41 ..     168     196 ..     163     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.5e-05
    TIGR00398  13 kpHlGhllttilaDvlarykrlrGeevlf 41 
                   +H+Ghl++ti++D+l r   + G++v  
  MMETSP1174-20130828|12763_1 168 EMHVGHLRSTIIGDTLSRVLAFMGHDVKR 196
                  78**********************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.63
# Mc/sec: 1357.60
//
Query:       MMETSP1174-20130828|12772_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-40  134.1   0.0      1e-39  133.7   0.0    1.1  1  TIGR00093 TIGR00093: pseudouridine synthase
    3.9e-06   24.2   0.0    1.2e-05   22.6   0.0    1.7  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   0.0     5e-43     1e-39       2     160 ..      51     230 ..      50     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 133.7 bits;  conditional E-value: 5e-43
    TIGR00093   2 KPkgvlsskdDp...ekrkvvkdlleklrgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtdedlealrkGvklede.....ktkpaklklikepel.............kt.klrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewreLt 160
                  KP+g+ls++  +   +kr+ +  +l++   + +++vGRLD+dseGllllt+dg+l+ ++t+ +  vek+Yl+qv+g +td+ l a+++Gv+++ +     +t+p+++  i  p+l             +t +++vtlteGr rqvr++taavg+++lrLvRvr+g v l ++ +Ge reL+
  MMETSP1174-20130828|12772_1  51 KPYGYLSQFVNNgqvKKRQQLLGSLNHNLPASVMPVGRLDQDSEGLLLLTTDGKLSFAVTSGRS-VEKQYLAQVDGCITDDGLGAMARGVEISCKggrqiETRPCQVARIPAPKLpergrrirddrhgPTsWISVTLTEGRHRQVRKMTAAVGFPTLRLVRVRVGSVLLGDMGPGEIRELD 230
                  99999999876522245566666666634799***************************99877.***************************86511111455666666666666*************888************************************************97 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.7e-09   1.2e-05      96     237 ..      63     205 ..      44     207 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.7e-09
    TIGR00005  96 tggyekntvlnallahlkeelvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkske.gtvdapla..rvenkkglvavakss...gkeavTvfkvler..dekaslvelkllTGRtHQiRVHlqylghpl 237
                  ++  + + +l  l ++l+    +++ +v RLD+d  Gll++     ++ +       ++v+k+Y a v+g +  +  g +   ++   +  ++ + + ++ +   + +   + +++    ++ +s++++ l  GR  Q+R  ++++g+p 
  MMETSP1174-20130828|12772_1  63 GQVKKRQQLLGSLNHNLP----ASVMPVGRLDQDSEGLLLLTT--DGKLSFAV-TSGRSVEKQYLAQVDGCITDDGlGAMARGVEisCKGGRQIETRPCQVAripAPKLPERGRRIRDdrHGPTSWISVTLTEGRHRQVRKMTAAVGFPT 205
                  444555667777777777....69****************965..45555543.468*************877444133333332003333333333333335557788889999987446679***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1299.27
//
Query:       MMETSP1174-20130828|12773_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1010.40
//
Query:       MMETSP1174-20130828|12771_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 798.88
//
Query:       MMETSP1174-20130828|12774_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-14   50.6   0.1    6.2e-14   49.8   0.1    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23
    8.4e-06   22.6   0.1      0.021   11.4   0.0    2.7  2  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1     3e-17   6.2e-14       1      69 [.     134     199 ..     134     208 .. 0.94

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 3e-17
    TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69 
                  ++l +Ktl ++++++d+++++ ++++K ki++++g   ++ +qq+Li+aGk L+Dd+t+++y+i+ +  
  MMETSP1174-20130828|12774_1 134 MQLFIKTLTGKTVTLDVDTSDSIMAVKCKIHDKEG---IPPDQQRLIFAGKQLEDDRTLSDYNIQKEST 199
                  8999*******************************...**************************98765 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   8.2e-05      0.17     217     245 ..      75     102 ..      17     112 .. 0.83
   2 !   11.4   0.0     1e-05     0.021     315     395 ..     232     312 ..     182     316 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 8.2e-05
    TIGR02231 217 ekktveltylaeirqstgEDWsdvklvLS 245
                  +++ v+++  + +r+ + EDW  v ++L 
  MMETSP1174-20130828|12774_1  75 TTP-VSISVYGLVRNDSDEDWDRVRITLV 102
                  335.99*****************999985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1e-05
    TIGR02231 315 aeveknglsveFkisrrvtipsdgdakkvtiaslelpaklnvravPslkstafleA.sakntselpLLpGevsifrdnafVg 395
                    ++  g  v++ ++ +v++ s+++a+ v +as  +  + + +   + ++t+   A ++ ntse+pL pG+v+if +++  g
  MMETSP1174-20130828|12774_1 232 IAMTGMGTHVQYEVPVEVSLRSQESAV-VHVASRPIRGERVLVFDKKENETVCQRAvHLTNTSEIPLAPGKVAIFEGGSIAG 312
                  445566788899999999998887765.89999988888777777777888877764799***************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1023.72
//
Query:       MMETSP1174-20130828|12777_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 865.85
//
Query:       MMETSP1174-20130828|12780_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1174-20130828|12776_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|12782_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.9   0.2       0.15    9.8   0.1    1.9  1  TIGR02608 delta_60_rpt: delta-60 repeat domain


Domain annotation for each model (and alignments):
>> TIGR02608  delta_60_rpt: delta-60 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   3.6e-05      0.15       2      54 ..      35      81 ..      34      82 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.6e-05
    TIGR02608  2 rayavavqsDGkIlvaGysdnssgnndfvlaRlNadGslDttFgtdGkvtldl 54
                 ++ + a+  D  I ++Gy ++  +++ + ++R     s Dtt+g dG  +l++
  MMETSP1174-20130828|12782_1 35 DCSSSAFKLDHAIQLVGYNED--ASTPYWIVRN----SWDTTWGVDGFIYLEM 81
                 556666666666667776554..3455666664....78********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|12779_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1270.40
//
Query:       MMETSP1174-20130828|12783_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|12781_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-20   70.8   0.0      3e-15   54.4   0.0    2.4  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    2.1e-16   58.2   0.0      9e-16   56.1   0.0    1.8  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.2e-14   50.6   0.0    1.1e-13   48.9   0.0    1.7  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.4e-14   50.0   0.1    4.8e-14   49.5   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.1e-13   47.4   0.0    1.4e-12   45.6   0.0    1.7  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    8.8e-12   42.7   0.7    2.2e-11   41.4   0.5    1.6  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.3e-11   42.3   0.2    2.6e-11   41.3   0.2    1.6  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.4e-10   38.8   0.0    1.7e-09   35.3   0.0    2.0  1  TIGR02415 23BDH: acetoin reductases
    2.5e-08   31.5   0.1    1.5e-07   29.0   0.1    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    0.00053   17.2   0.1     0.0013   16.0   0.1    1.6  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00058   16.6   0.0     0.0014   15.3   0.0    1.5  1  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00086   16.4   0.2     0.0014   15.8   0.2    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      0.006   13.5   0.1     0.0087   13.0   0.1    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0087   13.0   0.1      0.066   10.1   0.1    2.0  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
  ------ inclusion threshold ------
      0.017   12.0   0.4      0.039   10.8   0.1    1.7  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.019   11.9   0.0      0.024   11.6   0.0    1.3  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.2e-17     3e-15       5     141 ..      33     165 ..      30     172 .. 0.83
   2 !   13.9   0.0   2.4e-05    0.0061     178     252 ..     182     257 ..     171     317 .. 0.63

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1.2e-17
    TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsy.tilkldlasldsvrkfveqfre.sgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliil 141
                   ++itg  sg+gl++++ l++ g  +vv+  r  e   +a  sl    +   ++ +l+la l sv    e++   +g ++d lv na +     +e   +++g+el v+tnh+ghf l++ l   +    +k+ r ++l
  MMETSP1174-20130828|12781_1  33 VAVITGGNSGIGLETTRVLAQAG-CKVVLCSRSREAGLNAVASLPTEDGRLvCVAQLNLADLVSVDAAAEEIATlAGPRIDFLVLNAGIMATPTRE--TTTQGFELQVGTNHFGHFRLAEKLWSRV---AQKECRTVVL 165
                  589********************.9********99999999998888776526789************99997725889********998766665..5789****************99887544...4455555555 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.4e-05
    TIGR01289 178 midgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehl.p..lfrtlfppfqkyitkgy 252
                    +g+ +    ay +sk cn+l ++el +r   +   +f s++pg +  t+l+re+  p  l r  f  f+k + k  
  MMETSP1174-20130828|12781_1 182 YTKGRAYSPWGAYGQSKACNLLFAKELSERLAPSGASAF-SVHPGVI-RTNLWREDQgPsfLNRLGFLSFNKLLPKLL 257
                  56677788888*******************988766665.89***77.689999875332133445777777776643 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   3.5e-18     9e-16       1     185 [.      34     231 ..      34     236 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 3.5e-18
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllG.........nagqa.....nYaasKaGligltkslakElasrnitvnavaPGfietdm 185
                  a++tG++ giG ++++ la++g+kvv+++rs+e+ ++++a+  +e g+ + +++l+++d  +v+++ ee+ + +g +id lv nAGi       + + + ++  + +n  g f+++++   ++ + ++ r + +ss + + G          +g a      Y  sKa    ++k l++ la  +  + +v PG i+t++
  MMETSP1174-20130828|12781_1  34 AVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIMAT-PTRETTTQGFELQVGTNHFGHFRLAEKLWSRVAQ-KECRTVVLSSTAHTFGgvelddlhyTKGRAyspwgAYGQSKACNLLFAKELSERLAPSGASAFSVHPGVIRTNL 231
                  79**********************************************************************99878**********975.566788999*****************99988776.788889999999888823222222223444333334777888888888888888889999**********9987 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   4.3e-16   1.1e-13       2     188 ..      32     232 ..      31     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 4.3e-16
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefg.sldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl.............vasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLv 188
                  kva++tG +sGigl+ ++ la+aG+kvv+ + + e++++a+a+  +e g  v   ++++++  +++   e++a+ +g ++d Lv nAGi   +p  e  t+ fe  +  n  + f++ ++    + +++   ++  + +h++             +a++   aY  +K   + ++K l    A +g  a ++ Pg +rt L 
  MMETSP1174-20130828|12781_1  32 KVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSrEAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIM-ATPTRETTTQGFELQVGTNHFGHFRLAEKLWSRVAQKECRTVVLSSTAHTFggvelddlhytkgRAYSPWGAYGQSKACNLLFAKELSERLAPSGASAFSVHPGVIRTNLW 232
                  99**************************9998869999**********************************99998579*********6.57999999******9999999999999999988888888777777777765111112112221122333457778888888888888888888888888888888888875 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.9e-16   4.8e-14     410     543 ..      27     159 ..      23     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.9e-16
    TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayG.GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqg 543
                  k+l+++va++tGg sGiG e++r l++ G  vvl     ea  +  a l  + G   +va +l+++d  +v aa +e+a   G  +d +v naGi+ ++p+ et+++ ++l++  +  G+f +a++    + +++
  MMETSP1174-20130828|12781_1  27 KDLSGKVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRLVCVA-QLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIM-ATPTRETTTQGFELQVGTNHFGHFRLAEKLWSRVAQKE 159
                  89************************************9999888899998888766665.799************999877736*********96.67899999****************99887655544443 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.4e-15   1.4e-12       1     187 [.      32     231 ..      32     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 5.4e-15
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGp.vdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvn....G........lkGqfGq..anysaakaGliGftkalaqegakkgvtvnviaPGyiatem 187
                  +va++tGg  GiG + ++ la++G+kvv   ++ e+  ++++      g  v v++ ++++  +  aa +++ +  Gp +d lv naGi    + +  t++ +e  + tn  + f +++++++ +++++    + +ss      G         kG++      y  +ka  + f+k l++  a +g +   + PG i t++
  MMETSP1174-20130828|12781_1  32 KVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGPrIDFLVLNAGIMATPT-RETTTQGFELQVGTNHFGHFRLAEKLWSRVAQKECR-TVVLSSTAhtfgGvelddlhyTKGRAYSpwGAYGQSKACNLLFAKELSERLAPSGASAFSVHPGVIRTNL 231
                  79**************************9999999999999988888999999*******************9999955**********97665.67788899999*******************999875.555565431111211111111344432212479999999999************************9987 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.5   8.6e-14   2.2e-11       2     146 ..      30     174 ..      29     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 8.6e-14
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkae.avavditdrasvdaavaaaeealgp.vdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgs 146
                   +kva++tgg  gig  + r +a+ g+kv +   ++ea  +  a++  + g+     + +++d  svdaa   + +  gp +d lv nag     p  +t    +e  +  n  g + +   +    v +k+ r v ++s a   g 
  MMETSP1174-20130828|12781_1  30 SGKVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRLVcVAQLNLADLVSVDAAAEEIATLAGPrIDFLVLNAGIM-ATPTRETTTQGFELQVGTNHFGHFRLAEKL-WSRVAQKECRTVVLSSTAHTFGG 174
                  68************************************977666666666665505568**************999999978********85.578888999999**********99988765.56788999999999999977664 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2     1e-13   2.6e-11       2     122 ..      28     151 ..      27     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1e-13
    TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgisels...etqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqav 122
                  +l Gkva++tG n+G+G   +  la+aG+++v  ++s        ++  ++ Gr +   +++lad  +++a  +e++  ag +id lv naGi+    + e + + ++  + +n    f l++++
  MMETSP1174-20130828|12781_1  28 DLSGKVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAglnAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIMATP-TRETTTQGFELQVGTNHFGHFRLAEKL 151
                  699*****************************999776541104445557899999999***********9999999999989*********98654.445555556655566655555555555 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   6.5e-12   1.7e-09       1     190 [.      32     234 ..      32     238 .. 0.68

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 6.5e-12
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtk.avavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.Gkiinaasiagveg..............spelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  kva++tG+  GiG + ++ La+ G +v+++    e+  +++  l  ++++   + +l+++d  +v++a e+ ++  G  +d lv naG+ + tp  e t + +e +   n +g +   + a + + ++ +k  + +  +s a + g              ++  +ay  +k +   +++  ++ La++g    +  PG+++t++++e
  MMETSP1174-20130828|12781_1  32 KVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRlVCVAQLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIMA-TPTRETTTQGFELQVGTNHFGHF---RLAEKLWSRVAQKeCRTVVLSSTAHTFGgvelddlhytkgraYSPWGAYGQSKACNLLFAKELSERLAPSGASAFSVHPGVIRTNLWRE 234
                  89*****************************99666666666665555550566789*************9999988579*********75.56666666555555555554443...33444444443333555555555543331111111110001144456777788777777888888889999999999999999999875 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   5.8e-10   1.5e-07       1     213 [.      29     241 ..      29     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 5.8e-10
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpg.lahya....aakhGlvg........ltktlanelaeygirvnsihPtsvdtamiepeamrelf 213
                  l Gkva+itG   G G   +  la+ G  ++    c+            ++ l+  a+l  + Gr v + + ++ +l  + a+ ee  +  G r+d +v naG+++ +++ e + + ++  + +n  G ++         + +k+  ++++ s++ +  +++    hy+     + +G  g        ++k l++ la+ g    s+hP  ++t++ +++   +++
  MMETSP1174-20130828|12781_1  29 LSGKVAVITGGNSGIGLETTRVLAQAGCKVVL---CSRS---------REAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIMA-TPTRETTTQGFELQVGTNHFGHFRLAEKLW-SRVAQKECRTVVLSSTAHTFGGVELdDLHYTkgraYSPWGAYGqskacnllFAKELSERLAPSGASAFSVHPGVIRTNLWREDQGPSFL 241
                  78*************************98874...4333.........467899999************************9998877777779**********97.5789*******************9987665.55667778888888777777777752457752221355676652222222156778888999****************99877655554 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   4.9e-06    0.0013       2     117 ..      35     150 ..      34     237 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.9e-06
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayy.gvvlnagiardaafpalseedwdavietnldgfynvihp 117
                  ++tg   gig   +  la +g ++ +  rs +a+ +++++  + +g  + + ++++ad v+v ++ e+  +  g     +vlnagi    +    + + ++  + tn  g + + + 
  MMETSP1174-20130828|12781_1  35 VITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIATLAGPRIdFLVLNAGIMATPTRE-TTTQGFELQVGTNHFGHFRLAEK 150
                  689*********************************999999999******************999876666776541589999997554433.34455666666666666655555 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.6e-06    0.0014       3     151 ..      35     200 ..      33     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.6e-06
    TIGR01179   3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit..evklvegdladkekleavle......eekidaviHfaaliav..gEsvkePlkYY.ennvvntleLlea....mqkagvkkliFsssaavYg..esekvpisEesplnpinpYGrsklm 151
                  ++tGg   iG  ++r l ++g +vv+     ++  +a+  l +     v + + +lad  +++a+ e        +id ++  a+ +a    E +++  +     n  + ++L e     +++ ++++++ ss+a ++g  e +++ ++   + +p   YG+sk+ 
  MMETSP1174-20130828|12781_1  35 VITGGNSGIGLETTRVLAQAGCKVVLCSRSREAGLNAVASLPTEDgrLVCVAQLNLADLVSVDAAAEeiatlaGPRIDFLVLNAGIMATptRETTTQGFELQvGTNHFGHFRLAEKlwsrVAQKECRTVVLSSTAHTFGgvELDDLHYTKGRAYSPWGAYGQSKAC 200
                  58999999*****************99999999899998888655645666778999999998776633333367899999999988752268888887764257888988887652222688999************93344678899999999*********75 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   5.4e-06    0.0014       3      90 ..      29     121 ..      27     131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.4e-06
    TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldks.aagleeleaa..hgdkvvgveg.dvrllddhkeavarcveafg.kldtlipnagiw 90 
                  l+++v+++tgg sg+g          g +v +  +s +agl+++ +     +++v+v+  +   l +   a+++     g ++d l+ nagi 
  MMETSP1174-20130828|12781_1  29 LSGKVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSrEAGLNAVASLptEDGRLVCVAQlNLADLVSVDAAAEEIATLAGpRIDFLVLNAGIM 121
                  7899*************999999999*********94468998887522345667665427777888888888777766658*********97 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.4e-05    0.0087       3      93 ..      33     119 ..      31     136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.4e-05
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93 
                  +a++tG+   iG   +  l q G +vvl   rs ea  + +a l +e      v++ +l+   s+ ++ eei      a  r d lv na 
  MMETSP1174-20130828|12781_1  33 VAVITGGNSGIGLETTRVLAQAGCKVVLC-SRSREAGLNAVASLPTEDGRLVCVAQLNLADLVSVDAAAEEIA---TLAGPRIDFLVLNAG 119
                  8*************************996.6788999999999*99988887788888887778888888775...456678888888885 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00026     0.066       3     131 ..      35     201 ..      33     214 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
    TIGR01214   3 litGakgqlgreLveqlskegsevvaltrs......................qldledpealeellrei....kP..dvvvntaAytdVDkaEsea...ekayavNalatenlA.....raaarvgallvhiSTDYvFDG..ekkrpYreedetnPlnvYgqsKlaG 131
                  +itG+++ +g e ++ l++ g++vv  +rs                      ql+l+d  ++    +ei     P  d++v  a   +  + E+     e     N  +  +lA     r+a++   ++v  ST   F G   +   Y++  +  P + YgqsK   
  MMETSP1174-20130828|12781_1  35 VITGGNSGIGLETTRVLAQAGCKVVLCSRSreaglnavaslptedgrlvcvaQLNLADLVSVDAAAEEIatlaGPriDFLVLNAGIMATPTRETTTqgfELQVGTNHFGHFRLAeklwsRVAQKECRTVVLSSTAHTFGGveLDDLHYTKGRAYSPWGAYGQSKACN 201
                  6888888888888888888888777777767888888888888888888888555554433333333221111333367776666666666666541113444457777777773322256777777889999*******54456789****************865 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015     0.039     139     175 ..      30      66 ..      20      89 .. 0.87
   2 ?   -2.3   0.0       1.4   3.7e+02     279     298 ..     147     166 ..     145     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
    TIGR02824 139 agetvLihggasGiGttaiqlakalgakvlvtagsde 175
                  +g+ ++i gg sGiG  ++ +  ++g+kv+   +s e
  MMETSP1174-20130828|12781_1  30 SGKVAVITGGNSGIGLETTRVLAQAGCKVVLCSRSRE 66 
                  69999****************99*****999888876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
    TIGR02824 279 leekvwpllaegkvrpvidk 298
                  l+ek+w+ +a++++r v+ +
  MMETSP1174-20130828|12781_1 147 LAEKLWSRVAQKECRTVVLS 166
                  7899**********998865 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.3e-05     0.024      94     158 ..     134     201 ..      34     209 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.3e-05
    TIGR01181  94 eafietnvvGtytlleavrkelk..evr.llhistDevyGdlekddaeftettplaPssPysaskaas 158
                  e  + tn  G ++l e + +++   e r ++  st   +G +e dd + t   +++P   y  ska  
  MMETSP1174-20130828|12781_1 134 ELQVGTNHFGHFRLAEKLWSRVAqkECRtVVLSSTAHTFGGVELDDLHYTKGRAYSPWGAYGQSKACN 201
                  556889**********986655423777456668************88*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.70
# Mc/sec: 605.26
//
Query:       MMETSP1174-20130828|12784_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|12790_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 183.98
//
Query:       MMETSP1174-20130828|12788_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1662.24
//
Query:       MMETSP1174-20130828|12792_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 467.46
//
Query:       MMETSP1174-20130828|12796_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 180.87
//
Query:       MMETSP1174-20130828|12791_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-206  683.9   0.0   1.9e-206  683.6   0.0    1.0  1  TIGR01793 cit_synth_euk: citrate (Si)-synthase, eukaryotic
    2.1e-39  133.2   0.0    3.1e-39  132.6   0.0    1.2  1  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
    9.8e-31  104.7   0.0    1.5e-30  104.1   0.0    1.2  1  TIGR01798 cit_synth_I: citrate (Si)-synthase


Domain annotation for each model (and alignments):
>> TIGR01793  cit_synth_euk: citrate (Si)-synthase, eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  683.6   0.0  1.4e-209  1.9e-206       2     426 ..      28     457 ..      27     458 .. 0.97

  Alignments for each domain:
  == domain 1    score: 683.6 bits;  conditional E-value: 1.4e-209
    TIGR01793   2 kdlkevlkekipeeqekvkklrkehgkkvvgnvtvdmvyggmrgvkglvwetsvldpeegirfrglsipecqkllpkakgge...eplpegllwllltgevpseeqvaalsaelaaradlpkfvvklidalpstlhpmaqfaaavaaleveskfakayakgiakkkyweytyedsldliaklptvaakiyrnlykdgkaasidkkkdysanlasmlgyddkslaelmrlyltihsdheggnvsahtshlvgsalsdpylslaaalnglagplhglanqevlvflkevvkev...genlteeqlkdyvwktlnsgkvvpgyghavlrktdpryesqrefalkklpddplfklvsqlykivpgiltekgkvknpypnvdahsgvllqyyglteasyytvlfgvsralgvlsqliidralglplerpksvstea 426
                   +lk vl  ++p +q+ +k+l++++g+ ++gnvtvd+ +gg+r+vk+++wets+ldpeegirfrg++ipe qkllp  kgg+   eplpegl+wllltge+p+++qv+ l+ael+ar++lp +v  l+ +lp+ +hpm+qf+++++a + eskfakay   + k++ywey+yed +d++ak+p +aa+iyrn+y dg +   d+++dys n+++mlgyd++ + elmrlyltihsdheggn sah++hl+gs+l+dpy+s+a +ln lagplhglanqevl +++e+ ++    g+++t+e++ ++ w+tlnsg+v+pgyghavlrktdpry++qrefalk++pdd+lfklvs++y++vp il+e+gk+ npypnvd+hsgvll +y +t+++yytvlfgvsra+g lsql +dralglplerpksv+ e+
  MMETSP1174-20130828|12791_1  28 DSLKAVLDAQVPRKQAELKELKQKYGNEIIGNVTVDQCIGGARSVKCMLWETSLLDPEEGIRFRGYTIPELQKLLPSHKGGGdlgEPLPEGLIWLLLTGEIPTKAQVDGLTAELHARSELPAHVGPLLRSLPKDMHPMTQFSIGLTACQSESKFAKAYHDHVPKSEYWEYAYEDVMDVMAKVPEIAAIIYRNVYFDGVV-NKDHSLDYSGNFCRMLGYDNEGFDELMRLYLTIHSDHEGGNASAHATHLIGSTLADPYISYAGGLNALAGPLHGLANQEVLGWIQELDRKFkseGKEVTKENITEFTWETLNSGQVIPGYGHAVLRKTDPRYTCQREFALKHMPDDELFKLVSTIYEVVPDILLEHGKAANPYPNVDSHSGVLLWHYNFTQNDYYTVLFGVSRAMGALSQLFWDRALGLPLERPKSVTSEW 457
                  589*****************************************************************************954449***************************************************************************************************************65.679**********************************************************************************9975433339*************************************************************************************************************************************998 PP

>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   2.3e-42   3.1e-39      40     336 ..     117     435 ..      77     451 .. 0.79

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 2.3e-42
    TIGR01800  40 EEvaylllygkLPtkeeLekfktelakerelpdevielleslpkeahpmavlr...tavsalgaldke.....kekvtkeeareiakrllaklptivaavyriregeeivapkedlsiaanFLymltGeepskeeekaldiaLiLyaeHe.lnAstfaarviastlsDiysaivaaigaLkGplHGGAneavlkmleeiedp..........eeaeeyikkklenkekimGfGHrvYktaDpRakilkela.kklsakkgesklyeiaerlekvvee...ekgllpnvDfysasvyaslgipve.lftpiFalsRvsGWta 336
                  E +++lll g++Ptk++++ + +el+++ elp++v  ll+slpk++hpm+      ta+   + + k       ++   e a+e   +++ak+p i a +yr    + +v+ +++l +++nF +ml   + ++   + +   L+++++He  nAs  a+  i+stl+D y +  +++ aL GplHG An++vl  ++e++            e+  e+  ++l++++ i G+GH+v +++DpR ++ +e+a k++ + +  + +  i+e + +++ e   + + +pnvD +s++   +  + ++ ++t +F +sR  G  +
  MMETSP1174-20130828|12791_1 117 EGLIWLLLTGEIPTKAQVDGLTAELHARSELPAHVGPLLRSLPKDMHPMTQFSiglTACQSESKFAKAyhdhvPKSEYWEYAYEDVMDVMAKVPEIAAIIYRNVYFDGVVNKDHSLDYSGNFCRMLG-YD-NEGFDELMRLYLTIHSDHEgGNASAHATHLIGSTLADPYISYAGGLNALAGPLHGLANQEVLGWIQELDRKfksegkevtkENITEFTWETLNSGQVIPGYGHAVLRKTDPRYTCQREFAlKHMPDDELFKLVSTIYEVVPDILLEhgkAANPYPNVDSHSGVLLWHYNFTQNdYYTVLFGVSRAMGALS 435
                  7799*********************************************977522255544344333310001333444667788899*************************************95.43.4667899***********946******************************************9999975421111101113334455578999************************983455555544444556666666666666567789*********98888886544**********998655 PP

>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   1.1e-33   1.5e-30      75     385 ..     119     436 ..      42     454 .. 0.76

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 1.1e-33
    TIGR01798  75 vcylllkgelptkeqkeefdekvkehtmvheqltrffkgfrrdahpmavl.vgvvga.....lsafyhdaldiedpkereia.airliaklptlaalsykysigqpfvypkndlsyaenflkmlfatpceeykvnpvlaraldrifilhadheq.naststvrlagssganpfaciaagiaalwgpahgganeavlkmleeig..........svekiaefikkvkdkndevrlmgfghrvyknydprakvlketceevlkelgkeddpllklalelekialed..eyfiekklypnvdfysgivlkalgipte.mftvifalartvgwisq 385
                  + +lll ge+ptk+q + + +++++ + +   +  ++++  +d hpm+ + +g++       ++  yhd +  ++  e      + ++ak+p +aa+ y+  +   +v   ++l+y++nf +ml    ++++  +    + +   +++h+dhe  nas+ +  l gs+ a+p+ + a g+ al gp hg an+ vl  ++e+             e+i+ef  +    n+   + g+gh v +  dpr +  +e     lk++   dd l+kl   + ++  +   e+      ypnvd +sg++l    +  +  +tv+f ++r++g +sq
  MMETSP1174-20130828|12791_1 119 LIWLLLTGEIPTKAQVDGLTAELHARSELPAHVGPLLRSLPKDMHPMTQFsIGLTACqseskFAKAYHDHVPKSEYWEYAYEdVMDVMAKVPEIAAIIYRNVYFDGVVNKDHSLDYSGNFCRML---GYDNEGFD----ELMRLYLTIHSDHEGgNASAHATHLIGSTLADPYISYAGGLNALAGPLHGLANQEVLGWIQELDrkfksegkevTKENITEFTWE--TLNSGQVIPGYGHAVLRKTDPRYTCQREFA---LKHM--PDDELFKLVSTIYEVVPDIllEHGKAANPYPNVDSHSGVLLWHYNFTQNdYYTVLFGVSRAMGALSQ 436
                  579********************************************8652444433111114556999988887776665426899***********************************98...46665555....45666789******559****************************************9999885222211111122445555444..456778899************987666653...5554..5999***9999887753221133344567**************999865289************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.63
# Mc/sec: 972.11
//
Query:       MMETSP1174-20130828|12795_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 294.78
//
Query:       MMETSP1174-20130828|12789_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1813.28
//
Query:       MMETSP1174-20130828|12799_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|12801_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|12803_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   20.3   0.0    0.00077   16.1   0.0    2.1  2  TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase


Domain annotation for each model (and alignments):
>> TIGR01322  scrB_fam: sucrose-6-phosphate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.9e-07   0.00077      82     190 ..      28     140 ..      22     154 .. 0.82
   2 !    1.8   0.0     0.004        16      30      66 ..     322     358 ..     302     365 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.9e-07
    TIGR01322  82 DshGvysGsAvekddkllllytgnvrdsdwereslqclAtsdddgsieKegkvviekpee.....gytehfrdpkvwkeedkyymvigaqteeekGkvllykskdlknWefvge 190
                  +++ v+  +Av kd+k++lly ++ +    + +s   lA+sdd++++++  ++v+   +      +    + dp+v ++ed  ++ + + + +   ++ + +s+dl  W+  g 
  MMETSP1174-20130828|12803_1  28 EEKDVFNPAAVVKDGKVYLLYRAEDKVGRLAGTSRIGLAVSDDGVKFDRRLTPVLYPDHDineaiEWDGGIEDPRVVEREDGRFV-MTYTSYDGVARLCIATSDDLMVWTKHGS 140
                  56678999******************************************9999976544111113345799*****99998874.5788888888999999*******98775 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.004
    TIGR01322  30 nGliyfkGeyhlfyqyfPlapvhglksWghlkskdlv 66 
                   Gl+y++Ge+ l+y     +    +    h+k ++l+
  MMETSP1174-20130828|12803_1 322 EGLVYYQGEWLLYYGTADSKIAVAHARPPHTKPEELI 358
                  69************87766666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1274.74
//
Query:       MMETSP1174-20130828|12809_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.1   0.0      0.067    9.7   0.0    2.0  2  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.021        85     198     259 ..      16      72 ..      10      93 .. 0.61
   2 ?    9.7   0.0   1.6e-05     0.067     190     234 ..     153     196 ..     148     205 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.021
    TIGR03300 198 anGklvalnletGqllwearValpkgatelerlvDvdgtpvvdgeqvyavsyqGrvaaldls 259
                  a+G l++++l++G+l   a+ + p+g +         g+  ++++ +    y+G++ ++dl+
  MMETSP1174-20130828|12809_1  16 AKGALQVYELNRGELNLVAETQKPHGIK-----CGTFGASSIEERHIACGDYSGNLSVYDLN 72 
                  5677777777777777777777777654.....22334444555555555555555555554 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 1.6e-05
    TIGR03300 190 dgvvlvgfanGklvalnletGqllwearValpkgatelerlvDvd 234
                  ++ vl+g++nG +  ++l+tG+l+ ea+V+ +    e++r  D++
  MMETSP1174-20130828|12809_1 153 ERCVLAGYDNGDVKLFDLRTGSLRSEANVGNGVTCVEFDR-RDIE 196
                  5789**************************9999999988.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|12811_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|12812_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.8   2.0      0.032   11.7   0.6    1.5  1  TIGR01912 TatC-Arch: Sec-independent protein translocase TatC


Domain annotation for each model (and alignments):
>> TIGR01912  TatC-Arch: Sec-independent protein translocase TatC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   7.9e-06     0.032     114     179 ..       7      70 ..       4      75 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.9e-06
    TIGR01912 114 lGalfaffvifPllfqilaefaavvglsaivdiakyvsfalllilsfGlifelPvllvflsrlgvv 179
                  +G  f ++ ++P+++  ++ faa  gl+   d ++ vs +l+ + s  l+    vllv    +gv+
  MMETSP1174-20130828|12812_1   7 VG--FFYYXVLPAFMSLATAFAAFHGLVRNNDNNEEVSCILFNLFSGDLAVRDVVLLVETATMGVL 70 
                  45..99*******************************99999888888887777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 559.01
//
Query:       MMETSP1174-20130828|12814_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1174-20130828|12813_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    4.2  33.1        4.4    4.2  22.9    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  22.9    0.0011       4.4     142     213 ..       3      68 ..       1     108 [. 0.41

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0011
    TIGR02794 142 kaeaeaKa.ekkakee..AakkaEeeakakaa.aeakkkaEaeeakkkaeaeakKakaeaeaKakae..eakaKaeae 213
                  kae+ a+  e+ka+e+  A+ kaEe++ka+++  ea+ +aE         ++a +++  a+ Ka ae   a  Kae +
  MMETSP1174-20130828|12813_1   3 KAEE-ARLvEEKAEEAglAEVKAEEARKAEKKaDEARLAAE---------EKA-EEARLAAVKA-AEarLAEVKAEDK 68 
                  2222.223344444444444444444433333122222222.........222.2233333333.1111111222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       322  (0.0784983); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.72
# Mc/sec: 205.32
//
Query:       MMETSP1174-20130828|12815_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 212.33
//
Query:       MMETSP1174-20130828|12816_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1049.14
//
Query:       MMETSP1174-20130828|12819_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   38.1   4.1    2.7e-10   37.6   2.9    1.3  1  TIGR00887 2A0109: phosphate:H+ symporter
    5.2e-07   26.7   2.5    7.8e-07   26.2   1.8    1.2  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.1e-05   20.5  12.4    4.3e-05   20.1   8.6    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    0.00076   17.5  10.3     0.0011   16.9   7.1    1.2  1  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   2.9   2.7e-13   2.7e-10     274     450 ..      18     186 ..       4     215 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 2.7e-13
    TIGR00887 274 ssdfvtkfskrkhgklLlGtavsWflLDiafYgvnLnqkvilkaiGysetaeknnayeelyktavgnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlai..aynelsekgllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalsl 450
                  s ++ ++   +k+ + L+G   sWf+ D   +g+  ++++il+++ +     ++    +l+ t   + +++   t+PG  ++++l+  +  k   l    i +++ +++a   +y+   +   ++l   ++f + FG     + + ++++P  +Rst  Gis  + k G +++ + +  
  MMETSP1174-20130828|12819_1  18 SIEVKRRLVTWKYISKLIGSGGSWFIYDFTSFGIRNYESTILDTV-FD----DD----SLVSTMDHE-LMMNSLTAPGLVLSIVLLSYISPKSQVLIAAAICAIITAIFAYtlEYHSSYHTVNFVLLCSLYFMQGFGGGICNYCLCTDMYPLEVRSTFSGISGGIAKFGGVLGIVYMYS 186
                  5566678899*********************************98.53....22....233333333.34445589**************9999999999999988887751167777777777888888999**************************************99876554 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   1.8   7.6e-10   7.8e-07     286     392 ..      74     182 ..      63     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 7.6e-10
    TIGR00895 286 kaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs.tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpi 392
                  + +++  l+  G vl+++ll++++ + ++  + a+ ++++a+fa+ +   +  ++ +++ll  +  +   g+ + ++ l +++Yp ++R+t  g   gi ++g+++g +
  MMETSP1174-20130828|12819_1  74 HELMMNSLTAPGLVLSIVLLSYISPKSQVLiAAAICAIITAIFAYTLEYhSSYHTVNFVLLCSLYFMQGFGGGICNYCLCTDMYPLEVRSTFSGISGGIAKFGGVLGIV 182
                  55677788999******************9899999*********998855566666666667777777899999******************************9965 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   8.6   4.1e-08   4.3e-05     374     498 ..      96     214 ..      79     221 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.1e-08
    TIGR00879 374 fGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigp..vvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyff 498
                  ++ ++  li aa++ai   +++   ++ ++     +s+  + f+ll+++ +  g+g+  + ++l+++++pl+vR+  + i+ + + ++ +  ++++++ + +  g g++  ++++l v+++i++++f
  MMETSP1174-20130828|12819_1  96 ISPKSQVLIAAAICAIITAIFA---YTLEYH----SSYHTVNFVLLCSLYFMQGFGGgiCNYCLCTDMYPLEVRSTFSGISGGIAKFGGV-LGIVYMYSVGSVCGDGITLGIMALLYVVMFIITWVF 214
                  5555555555555555555555...555553....56666666666666666555544499*************9888888888877775.59999999999788888888**************98 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   7.1   1.1e-06    0.0011      21     138 ..      92     215 ..      80     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.1e-06
    TIGR00880  21 ltdrvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                  l + ++ k+ +l+  +i+++ +++fa +          n+++l+ + ++qGfg++++      l  d+++ e rs   g+   ++ +g +lG++    ++++ g  +++ i+all ++ fi+++++ 
  MMETSP1174-20130828|12819_1  92 LLSYISPKSQVLIAAAICAIITAIFAYTleyhssyhtVNFVLLCSLYFMQGFGGGICNYC---LCTDMYPLEVRSTFSGISGGIAKFGGVLGIVYMYSVGSVCGDGITLGIMALLYVVMFIITWVFC 215
                  4566677777888899999999999999999999999*******************9865...59******************************99999**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 889.19
//
Query:       MMETSP1174-20130828|12821_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 911.70
//
Query:       MMETSP1174-20130828|12820_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1342.99
//
Query:       MMETSP1174-20130828|12825_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|12824_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   10.5   1.3      0.073   10.2   0.1    1.7  2  TIGR01614 PME_inhib: pectinesterase inhibitor domain
        0.9    7.5   6.5        5.4    5.0   0.0    3.3  4  TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit


Domain annotation for each model (and alignments):
>> TIGR01614  PME_inhib: pectinesterase inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   3.6e-05     0.073     111     148 ..      18      55 ..      11      75 .. 0.82
   2 ?   -3.4   0.0      0.53   1.1e+03     102     120 ..     179     197 ..     169     206 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.6e-05
    TIGR01614 111 aLkkalaslkskdysdvetwlssAltdpstCedgFeer 148
                  ++++a++ + s++y  +++w s  l++ +tC d+ +e+
  MMETSP1174-20130828|12824_1  18 SIQDAMDGIISEAYEAADAWDSLNLDNLRTCLDDQAET 55 
                  489****************************9986655 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.53
    TIGR01614 102 velysdavdaLkkalaslk 120
                  +++  +++++Lk++ +sl+
  MMETSP1174-20130828|12824_1 179 RDAVVESEQRLKQSQRSLV 197
                  4555566777888887776 PP

>> TIGR00690  rpoZ: DNA-directed RNA polymerase, omega subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.16   3.2e+02       4      13 ..      17      26 ..      15      32 .. 0.74
   2 ?    5.0   0.0    0.0026       5.4       6      30 ..      57      81 ..      53     105 .. 0.87
   3 ?   -2.7   0.1      0.67   1.4e+03      22      31 ..     137     146 ..     135     154 .. 0.78
   4 ?    4.3   0.2    0.0046       9.5      24      52 ..     169     197 ..     167     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.16
    TIGR00690  4 ptidellkrv 13
                  +i+++++ +
  MMETSP1174-20130828|12824_1 17 FSIQDAMDGI 26
                 68*****965 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0026
    TIGR00690  6 idellkrvssryaLVivAarRArql 30
                 ++e+++rv s+ aL  +A r  r  
  MMETSP1174-20130828|12824_1 57 AEEVNERVASKRALAQLANRFKRHF 81
                 79****************9987765 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.67
    TIGR00690  22 vAarRArqln 31 
                  +A+ RA+ + 
  MMETSP1174-20130828|12824_1 137 AATARAKNIE 146
                  7899999886 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0046
    TIGR00690  24 arRArqlnleeedliepeeqdKptviALr 52 
                  ar Ar l +  ++++e e++ K+   +L 
  MMETSP1174-20130828|12824_1 169 ARAARSLEVARDAVVESEQRLKQSQRSLV 197
                  899****************9998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 941.52
//
Query:       MMETSP1174-20130828|12822_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.57
# Mc/sec: 1536.08
//
Query:       MMETSP1174-20130828|12827_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.46
# Mc/sec: 2074.52
//
Query:       MMETSP1174-20130828|12828_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-13   46.1   3.0    8.2e-13   46.1   2.1    2.6  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   2.1     2e-16   8.2e-13      12     143 ..      27     151 ..      15     167 .. 0.67
   2 ?   -1.7  15.4     0.067   2.7e+02     253     318 ..     293     362 ..     266     408 .. 0.70

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2e-16
    TIGR00601  12 kfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaese 143
                   ++i +     v elK++ie+++g   +  + q+Liy GkiL+D   v+ yki+++d + + v k+ a  + +a+ +a ++s ++ +p   +a+++ ++ +a +s+++ +  + ++   +al+s  +++++e
  MMETSP1174-20130828|12828_1  27 AVSISILEASSVVELKNEIEKSIG---VVPKAQRLIYKGKILKDTDDVAVYKISNGDTLLLQVNKAIAEASRSATTPAVSSSNAQNSP--VAAVPSVSAGSAASSTAQFSG-V-RARLESALASLCAANSTE 151
                  57788888899*************...6667799******************************999888766665555666666666..444444444444444443322.2.222222333333333333 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.067
    TIGR00601 253 rnqpqf.qqlRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpveelegesdlveg......t 318
                   ++p + qq+ ++  qnP++++  +qq+  +nPq++qq++ ++    q++++p       +++++g      +
  MMETSP1174-20130828|12828_1 293 MSNPAMaQQMQSM-MQNPQMMQQQMQQMM-QNPQMMQQMMSNPM-VQQMMQDPQAMQRMLGGMPGGmpggmpG 362
                  4555551556555.57***********96.69*********995.4688888877656667777766555642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       554  (0.135056); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.46
# Mc/sec: 1182.16
//
Query:       MMETSP1174-20130828|12833_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   22.2  14.0     0.0013   16.4   0.3    3.3  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
  ------ inclusion threshold ------
      0.025   11.9   0.3      0.029   11.7   0.2    1.1  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   6.1e-07    0.0013       5      27 ..       7      29 ..       5      30 .. 0.86
   2 !   10.3   0.9   5.5e-05      0.11       5      18 ..      34      48 ..      32      48 .. 0.89
   3 !    3.6   0.4    0.0069        14       4      16 ..      60      72 ..      59      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.1e-07
    TIGR01376  5 ilFsnNsakg.sGGAIyatgkisi 27
                  +Fs Nsa+  +GGA+y t + ++
  MMETSP1174-20130828|12833_1  7 CSFSDNSATAyYGGALYIT-TSTL 29
                 79***************88.6665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.5e-05
    TIGR01376  5 ilFsnNsakg.sGGA 18
                  +Fs+Nsa+  sGG+
  MMETSP1174-20130828|12833_1 34 CSFSENSAASkSGGG 48
                 79*********9996 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0069
    TIGR01376  4 tilFsnNsakgsG 16
                 + +F++N a   G
  MMETSP1174-20130828|12833_1 60 SCSFTSNNASSLG 72
                 689******8755 PP

>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.4e-05     0.029     122     165 ..      40      82 ..      19      87 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
    TIGR01840 122 gaAsnaglpygsasssisalpkmsstaktakelgrlvrgsqsel 165
                  +aAs +g+ +g  ss+i +  + s t ++a +lg+l+ +sqse+
  MMETSP1174-20130828|12833_1  40 SAASKSGGGMGVSSSTIMMDSC-SFTSNNASSLGNLLYNSQSEI 82 
                  5799********9999976666.56****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1174-20130828|12831_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-37  127.1   0.0    5.7e-37  125.2   0.0    1.8  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.1e-19   68.2   0.0    2.6e-19   67.0   0.0    1.5  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1


Domain annotation for each model (and alignments):
>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   2.8e-40   5.7e-37      11     330 ..      13     339 ..       6     341 .. 0.81

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 2.8e-40
    TIGR03997  11 ltlknRivFsahltnyav..enlpserhaaYyaeRakGGaGliiteelsvhPsDrpYekliagyeeevipgyrriadavhkhgvkilaqlnhnGgqsas........slsrlpvwaPsavpdvlfr..evPkaleesdiaevvegfakvaahvaagGfDGvelqasqsslvRqFlspltnrRtDeYGGslenRaRlllevleavRkaiGedrvlGvRlcgdelve..GGltlaeaveiaalleatglvDylntsigvaletLhlveasmavppgyaaelaaaireavdlPvvavGri.kdpaqaervlaeGqadlvgvvRaqiaDPelaakakeg 330
                  +t+knR+  ++     a+  e+ +++ h++Yy++R+ GG  +i++e + +    + + k+   y++e +  ++ ++davh+ g k++ ql h G+ ++s        s s lp+ +  +v + + +  e+Pka++++dia  ++ + ++ + ++a+GfDGve+++++  l+ qFl    n+R+D YGG+lenR+R++ ev+e+v +    +r++ +R++ +  ++  GG +  e+ ++a + +a   +  +++  g+++   h   a+ ++++    +  +  +   +  v+  G + ++ + a++ + +G+ad+v + R  +++P+l+++ ++g
  MMETSP1174-20130828|12831_1  13 ITFKNRVGLAPLTRGRASypEGCVNDLHVKYYTQRSSGG--FILSEATGISRRGQGWYKAPGIYTDEQVAAWKIVTDAVHNEGGKMFCQLWHMGRAGHSdlfgdvplSASALPLSGEVTVENHVKKpyETPKAMTDEDIAATLAEYKNATKCAMAAGFDGVEIHSANGYLLDQFLQTCSNKREDGYGGTLENRLRFMKEVIEVVLTECPAERTM-IRFSPNGAFQemGGEDNLETFDAAIQAAAGYKLLAVEVMDGLTF-GFHEKCAQYTLERTR--KNVNIGNPDGSTAVI--GNVgHTQESANKEIGAGNADMVSIGRDYMSNPDLPERYRDG 339
                  567888887776666665347999*************96..8*******************************************************99322222223355555555566666654559**********************************************************************************999.9***99988879**999999999999888888877777777443.344444444443322..222212222223333..3332567899*************************998877 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.3e-22   2.6e-19      32     204 ..      36     221 ..      12     231 .. 0.83
   2 ?   -2.8   0.0      0.17   3.4e+02     293     319 ..     307     333 ..     295     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 1.3e-22
    TIGR03996  32 lserhvayyerraeGGaGivvtevasvseddwpyerap..lasecgaGwravaaavrpyGtlvlaGlGhtGlqGssay........sqsvlwgpsrvadvvsr..elpmeleqaeidslvaGfragaaaavaagldGveldaGprsllrqflsgltnvredkyG...adrlrlvrevvaavreevGdd 204
                  + + hv yy +r++GG   +++e + +s     + +ap   + e +a w+ v+ av+  G  ++  l h G  G s          s  +l g  +v + v +  e p ++ + +i++ +a +++++  a+aag+dGve+ +    ll qfl   +n+red yG   ++rlr+++ev+  v  e   +
  MMETSP1174-20130828|12831_1  36 VNDLHVKYYTQRSSGG--FILSEATGISRRGQGWYKAPgiYTDEQVAAWKIVTDAVHNEGGKMFCQLWHMGRAGHSDLfgdvplsaSALPLSGEVTVENHVKKpyETPKAMTDEDIAATLAEYKNATKCAMAAGFDGVEIHSANGYLLDQFLQTCSNKREDGYGgtlENRLRFMKEVIEVVLTECPAE 221
                  6789*********996..78999999998888878888546789***********************9999999875312222211334566777888888765699********************************************************955558**********998876555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.17
    TIGR03996 293 darralddavadvvemtraqiadpdlv 319
                   a++ +  + ad+v + r  +++pdl 
  MMETSP1174-20130828|12831_1 307 SANKEIGAGNADMVSIGRDYMSNPDLP 333
                  4677888999***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.49
# Mc/sec: 1521.92
//
Query:       MMETSP1174-20130828|12838_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.3   4.9        0.1   10.2   0.1    3.0  2  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   2.5e-05       0.1      21      42 ..       8      29 ..       4      31 .. 0.82
   2 !    8.4   0.6   8.8e-05      0.36      11      34 ..      51      74 ..      36      78 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.5e-05
    TIGR03804 21 syGIyLydSsnNtlsnNtasnN 42
                 ++G yLy+Ss   ++n t+ ++
  MMETSP1174-20130828|12838_1  8 GGGMYLYGSSSAAINNTTFESC 29
                 459******9988888888876 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 8.8e-05
    TIGR03804 11 tlenNtasnNsyGIyLydSsnNtl 34
                 t e++ a+n ++G+yL+d s  t+
  MMETSP1174-20130828|12838_1 51 TFESCSAYNYGGGVYLSDYSSATI 74
                 689999999999****99766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|12837_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   17.6  12.1      0.024   10.2   0.1    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.071    8.5  17.1      0.045    9.2   7.3    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   5.4   1.5e-05     0.031     687     799 ..       8     118 ..       1     156 [. 0.30
   2 !   10.2   0.1   1.2e-05     0.024     670     760 ..     180     270 ..     169     286 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.5e-05
    TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkee 799
                  ei+ l++++ae+e+ l+  +++ ++le++ +  ++e ++le++++++kk++  +++++  l+++++ l k+l+  ++++  l +++ee e+ + + e+++e+  ++  + +++
  MMETSP1174-20130828|12837_1   8 EITYLKSRLAEAEDSLQ-FDDQIQSLETDCNFYKTEGNRLETSVNSMKKKIVLAKEKHAVLKKEREMLLKKLKAHKKQEWLLCSDIEERET-KVAMERRVEDIITSSSKPRRD 118
                  22222222222222222.2222222222222222222222222222222222222222222222222222222222222222222222221.111111111111111111111 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.2e-05
    TIGR02168 670 tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekelee 760
                  +++s le ++  +e e++++ ++++ ++l+kel++ ++++++l++ +   +++ ++le+ +    +++++ e ++++  ++ + l +++ e
  MMETSP1174-20130828|12837_1 180 ENTSPLEMERDPAETEKDTALTKKEERALKKELSDCRSQTSKLRSLVVAHQTRRTDLEDFFLLCVEDVKKNEDRCQRQPATSKTLPNRIPE 270
                  5788899999999999999999999999999999999999999999999999999999999999999999999988877776666665555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.3   2.2e-05     0.045     672     778 ..      17     122 ..       4     148 .. 0.70
   2 ?    3.6   0.3    0.0011       2.2     284     321 ..     199     236 ..     176     281 .. 0.43

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 2.2e-05
    TIGR02169 672 sekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklakl 778
                  +e e + +  +++++Le + ++ + e +r+e  ++++++k+  a++k+  ++ke+e+l ++ ++ k++   l ++++e e +++ + ++++++    ++ ++++++ 
  MMETSP1174-20130828|12837_1  17 AEAEDSLQFDDQIQSLETDCNFYKTEGNRLETSVNSMKKKIVLAKEKHAVLKKEREMLLKKLKAHKKQEWLLCSDIEERETKVAME-RRVEDIITSSSKPRRDINNQ 122
                  45556666888888888888888888888888888888888888888888888888888888888888777778887776665443.34444444445555555544 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0011
    TIGR02169 284 klgeeeqlavkekleelkaeiekleraiaekeeeleda 321
                  +l++ e +a+k++l + +++ +kl++ + + + +  d+
  MMETSP1174-20130828|12837_1 199 ALTKKEERALKKELSDCRSQTSKLRSLVVAHQTRRTDL 236
                  12222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1038.08
//
Query:       MMETSP1174-20130828|12841_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   11.8   0.1      0.021   10.7   0.0    1.5  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0     0.027   1.1e+02     130     158 ..      32      60 ..      28      63 .. 0.86
   2 !   10.7   0.0   5.2e-06     0.021     129     161 ..      64      96 ..      58     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.027
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                  +g + l++A h+    +v  Ll+  + + 
  MMETSP1174-20130828|12841_1  32 EGVSSLMVACHHGYGHLVAFLLKHQVCIT 60 
                  688999******99999999999888775 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.2e-06
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasveara 161
                   +g t l+ A+     +iv+ Ll++ga v+a+ 
  MMETSP1174-20130828|12841_1  64 IRGRTSLHYAAAAGHRTIVRFLLKRGALVSAQS 96 
                  5899*************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 541.61
//
Query:       MMETSP1174-20130828|12843_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 767.49
//
Query:       MMETSP1174-20130828|12846_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1174-20130828|12850_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|12848_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   14.3   0.0       0.11   10.2   0.0    2.6  2  TIGR02383 Hfq: RNA chaperone Hfq


Domain annotation for each model (and alignments):
>> TIGR02383  Hfq: RNA chaperone Hfq
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.024        98      20      38 ..     131     149 ..     127     152 .. 0.87
   2 !   10.2   0.0   2.7e-05      0.11       2      31 ..     221     250 ..     220     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.024
    TIGR02383  20 vfLvnGvklkGviesfDkF 38 
                  + L n  +++G ++sf k+
  MMETSP1174-20130828|12848_1 131 INLHNCRQIEGDVVSFEKH 149
                  6788999*********875 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 2.7e-05
    TIGR02383   2 nlQdkflnklrkekievtvfLvnGvklkGv 31 
                  n+ d +    ++e+ +  v+Lvn  +++G+
  MMETSP1174-20130828|12848_1 221 NTSDVYAGATKREQQKCEVYLVNQCRIRGI 250
                  6778888999*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1235.04
//
Query:       MMETSP1174-20130828|12847_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1175.53
//
Query:       MMETSP1174-20130828|12852_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.0   0.2      0.032   12.0   0.1    1.1  1  TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD


Domain annotation for each model (and alignments):
>> TIGR03859  PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.9e-06     0.032      41      67 ..      13      39 ..       5      43 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.9e-06
    TIGR03859 41 dGkrsvaeiiqeLeqeFpaaeeieeDV 67
                 d krs++ + ++L++e++++  + +++
  MMETSP1174-20130828|12852_1 13 DRKRSISVVLDQLQEEYEEEVAVVDEI 39
                 889**************9866665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1174-20130828|12854_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|12851_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    3.3  10.8          4    2.8   7.5    1.1  1  TIGR00845 caca: sodium/calcium exchanger 1


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.5   0.00098         4     255     393 ..     219     361 ..     213     385 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.00098
    TIGR00845 255 vykylekryradkkrGviietegdevkskaeieldgklvesevendg.v.evkeld..earrelieilkelkqkhPdkdleqleelaeyevlsrqqksrafyriqatrklvGaGnilkkkaakaarkavevkevaadkeeede 393
                  ++ky++ +   + +  +   +e  e ++++e + ++k v  + e ++ v  vk+l   e           +kq h ++  e le  a+ + l +q ks a   i  +rk+v   + + +  + + +   e  ++  +++  de
  MMETSP1174-20130828|12851_1 219 INKYIYDNPNDELETILRARKEVAEKETETETGSEEKAVRRKAEMENeVsRVKALAknEVMEAKTAANFAVKQAHTQARKEVLEVKAKTKNLVKQAKSNADKAIMESRKMVMESEEMVRCLKTELKVLSESVTNDLQQRLMDE 361
                  457877776666444444455666677777777777777777666332434554431133333333445799**************************************987666655555555544444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       526  (0.12823); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1653.16
//
Query:       MMETSP1174-20130828|12853_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.50
# Mc/sec: 968.80
//
Query:       MMETSP1174-20130828|12855_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   24.0   0.0    5.1e-05   21.3   0.0    2.2  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.7      0.14   5.7e+02      59      86 ..     200     226 ..     192     245 .. 0.71
   2 !   21.3   0.0   1.2e-08   5.1e-05      25     108 ..     516     598 ..     493     603 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.14
    TIGR00229  59 reevrerierrlegerepvseerrvkrk 86 
                  +ee r+r+ ++++ +++ + +e+r  rk
  MMETSP1174-20130828|12855_1 200 IEEQRQRQLNHRRARNRKHAKETRR-RK 226
                  5677777777777677777777775.43 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.2e-08
    TIGR00229  25 GnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspirdaggelg 108
                   +++++N a++ ++GYs++e++G +++ +  e  +  v + +e++ +  r+p s++++++rkd +  ++ v + p++d+++  g
  MMETSP1174-20130828|12855_1 516 FTVTHANAAWCALMGYSEDEVRGASLQLFKGEYTSVPVMAAFEKDCQ-CRRPSSMNVTLYRKDCTGLPLFVQLCPLTDEEDLSG 598
                  67899**********************9999999999999****999.5589*****99****999999999888885444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 1804.81
//
Query:       MMETSP1174-20130828|12859_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 581.73
//
Query:       MMETSP1174-20130828|12860_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1180.57
//
Query:       MMETSP1174-20130828|12863_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|12867_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 668.46
//
Query:       MMETSP1174-20130828|12864_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-25   86.8   0.1    8.3e-12   43.1   0.2    2.1  2  TIGR00369 unchar_dom_1: uncharacterized domain 1
    7.6e-14   49.7   0.2    5.9e-06   24.3   0.0    2.3  2  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.3e-14   2.6e-11      16     111 ..      49     143 ..      40     149 .. 0.92
   2 !   43.1   0.2   4.1e-15   8.3e-12      15     114 ..     252     353 ..     245     356 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.3e-14
    TIGR00369  16 eelevempvkertlqpigsvHGGvlaaLadtagslaaaltkeegkavvtlelnvnylrpareG.klrAiakvvhlGrqtgvaeieivdeqgrliala 111
                  +++   m++ +r  + +gs+HGG++a+L+d +    aa++  +g   v + +  +y+  a  G ++r +a+v +lGr+++  e + + + g+l++  
  MMETSP1174-20130828|12864_1  49 GKVIFSMTLGPRFQNFFGSLHGGAAASLVDVTT--TAAIISMGGFPGVSTSMGLDYVNGAAPGdTIRIEASVKRLGRTLAFTEARLFRPDGKLLCRG 143
                  5677889999**9999***************99..78889999*****************9999*******************************75 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 4.1e-15
    TIGR00369  15 deel..evempvkertlqpigsvHGGvlaaLadtagslaaaltkeegkavvtlelnvnylrpareG.klrAiakvvhlGrqtgvaeieivdeqgrlialarlt 114
                  d+ +    +++v +++ + ++ +HGG +aaL+d +gs+++a  ++  ++ v+++l+v+y  ++  G +++ +a+ ++ Gr++   e+  +d++gr++a+ + t
  MMETSP1174-20130828|12864_1 252 DDNApvTWTLTVGKQHANFMNKLHGGCSAALVDVLGSALIARGDP-RECGVATNLSVQYATAVGVGkTVQFEARMLKRGRRMCFVEVTGRDKAGRMVASGTVT 353
                  5554225578999***********************666665555.5688999*************9********************************9987 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.9e-09   5.9e-06      12     104 ..      45     140 ..      40     145 .. 0.85
   2 !   23.0   0.2   7.6e-09   1.6e-05      17     106 ..     258     349 ..     248     355 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.9e-09
    TIGR02286  12 spgearv..altvredmlnghgtahGGllfalAD.saFAlacNsageaaVAaevtidflrparagevlvAeAkevsrsgrtgvydvevrneegelv 104
                  sp++ +v   +t+     n +g+ hGG   +l D +  A +    g   V +++ +d+++ a  g+++  eA++++ +++ + ++ ++ + +g+l+
  MMETSP1174-20130828|12864_1  45 SPESGKVifSMTLGPRFQNFFGSLHGGAAASLVDvTTTAAIISMGGFPGVSTSMGLDYVNGAAPGDTIRIEASVKRLGRTLAFTEARLFRPDGKLL 140
                  565555522577778899****************44556777777888**************************************9999999886 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 7.6e-09
    TIGR02286  17 rvaltvredmlnghgtahGGllfalADsa.FAlacNsa.geaaVAaevtidflrparagevlvAeAkevsrsgrtgvydvevrneegelvAl 106
                  + +ltv +++ n  +  hGG   al D    Al++  +  e  VA++ ++++  +  +g++++ eA+  +r++r    +v+ r++ g++vA 
  MMETSP1174-20130828|12864_1 258 TWTLTVGKQHANFMNKLHGGCSAALVDVLgSALIARGDpRECGVATNLSVQYATAVGVGKTVQFEARMLKRGRRMCFVEVTGRDKAGRMVAS 349
                  3468899********************8624666655424679**********************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1038.70
//
Query:       MMETSP1174-20130828|12866_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-40  135.7   0.5    3.6e-40  135.3   0.3    1.2  1  TIGR00496 frr: ribosome recycling factor


Domain annotation for each model (and alignments):
>> TIGR00496  frr: ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.3   8.8e-44   3.6e-40       3     174 ..      53     224 ..      51     225 .] 0.98

  Alignments for each domain:
  == domain 1    score: 135.3 bits;  conditional E-value: 8.8e-44
    TIGR00496   3 kmdkslealkeelskiRtgranpsllDkilveyygaktplkqlasvtvedartlvikpfdkslinaiekailkadlglnPssdGekirvnlPplteErRkelvkvvkkiaEeakvavRnvRrDandkvkklekdkeisEdeekklkeeiqkitdeyikkideilkdkekell 174
                   m+ +l++l++e+  +  + +++s++++++v  yg++ pl ++a+v ++ ar+++i++fd sl +a++k i  + +g nP+++G+ i v++P+l +E+R  l + +++  E ak+ +R vR+D  d++k+l+ d   sEd+ + ++e ++ +tdey++ i+e + +k +e+ 
  MMETSP1174-20130828|12866_1  53 DMQSALDSLDNEFGSLQGASPSTSIFENVQVPAYGSNSPLSSIAQVSMKGARKVMIHVFDASLRDAVQKVIRDSAMGFNPQIEGDAIAVPIPKLNKESRSLLERSARASSESAKLRLRRVRKDNIDELKQLKSDGGFSEDDVRMSQEIVDAVTDEYVSIINERTSSKLEEIQ 224
                  6999*******************************************************************************************************************************************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1024.05
//
Query:       MMETSP1174-20130828|12870_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.5   4.7      0.054   11.6   0.3    2.2  2  TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit


Domain annotation for each model (and alignments):
>> TIGR03647  Na_symport_sm: putative solute:sodium symporter small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.3e-05     0.054       9      46 ..     139     175 ..     135     183 .. 0.90
   2 ?   -3.4   0.1      0.64   2.6e+03      10      20 ..     225     235 ..     221     241 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.3e-05
    TIGR03647   9 livvlLviWfvvsfgvgilfaeeLnsitlfGfplgfwl 46 
                  l+++ L++W+ + +g g  + + +  + l G++l +++
  MMETSP1174-20130828|12870_1 139 LVLAPLIVWATLKYGSGT-VMDLMPLQCLYGYSLVYYI 175
                  78889*************.889997777*********7 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.64
    TIGR03647  10 ivvlLviWfvv 20 
                  iv+ L i+f++
  MMETSP1174-20130828|12870_1 225 IVIALQIGFMF 235
                  44555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1110.53
//
Query:       MMETSP1174-20130828|12874_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|12876_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|12875_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1174-20130828|12877_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.64
# Mc/sec: 175.30
//
Query:       MMETSP1174-20130828|12880_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 635.63
//
Query:       MMETSP1174-20130828|12882_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1293.49
//
Query:       MMETSP1174-20130828|12888_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 167.19
//
Query:       MMETSP1174-20130828|12893_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|12889_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-53  177.2   1.7    7.1e-53  176.8   1.2    1.1  1  TIGR01172 cysE: serine O-acetyltransferase
    2.2e-15   54.6   3.5    3.3e-15   54.0   2.4    1.2  1  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    2.5e-14   50.9   1.4      4e-14   50.3   1.0    1.3  1  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
    1.7e-10   38.2   2.7    2.2e-06   24.6   0.1    2.1  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    2.9e-10   38.0   1.8    3.7e-10   37.6   1.3    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    5.9e-08   30.6   4.4      2e-07   28.9   0.1    2.2  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
    3.7e-06   23.9   2.2    2.6e-05   21.1   1.5    1.9  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    4.2e-05   20.8   1.3    9.1e-05   19.7   0.9    1.5  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    0.00014   18.1   0.2    0.00021   17.6   0.2    1.1  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
     0.0048   14.6   1.5       0.48    8.1   0.1    2.3  2  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
  ------ inclusion threshold ------
      0.053   10.6   1.7       0.15    9.1   0.4    1.8  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   1.2   1.9e-55   7.1e-53       2     162 .]      75     239 ..      74     239 .. 0.96

  Alignments for each domain:
  == domain 1    score: 176.8 bits;  conditional E-value: 1.9e-55
    TIGR01172   2 kedlkavlerDPaaesalevlllykglhallayrlahalykrk...lkllarllselvrvltgvdihPaakigrgvliDhatGvviGetavigddvsiyqgvtLGgtgkekg.kRhPtvkegvvigagakvLGnievgenakiGansvvlkdvpaeatvvGvpar 162
                  ++d+++ +  DPa++  l v l++kg+ha+ + r++h +++++    kl+a+ll++ ++ ++gvdihP+ ++grgv++DhatGv +Get+v+g++v i+++vtLG+tg+ +  +RhP+v++gv +ga  +vLGnie+ge+a i a+++v k+vpa+ t+vG+par
  MMETSP1174-20130828|12889_1  75 AADMQRFKVVDPACDGLLGVYLFFKGVHAIACARVSHHFWTERgeaGKLVAKLLQSEASDVFGVDIHPGCRLGRGVTVDHATGVTLGETCVVGNNVYIMHDVTLGATGTGTEfDRHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPAR 239
                  689999**********************************987332589***********************************************************98888**************************************************97 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   2.4   8.9e-18   3.3e-15      67     202 .]     105     239 ..      99     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 8.9e-18
    TIGR03570  67 GdnkaRkklveklkkkglrfatlihpsaivsksasiGeGvvimagavin..advrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvkdipenavvvGvPak 202
                  + +++ +++ ++  ++g  +a+l +++a     + i  G+ +  g+++   ++v++g+ +++ +++++ Hd+++g+     +g     + k+g+gvf+Ga++tv+ +++Ig+ga++ a a+V k +p++ ++vG Pa+
  MMETSP1174-20130828|12889_1 105 ACARVSHHFWTERGEAGKLVAKLLQSEASDVFGVDIHPGCRLGRGVTVDhaTGVTLGETCVVGNNVYIMHDVTLGAT---GTGTEFDRHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPAR 239
                  55555555566666666677777778888788899999999999999972257999*******************98...5799****************************************************97 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.0   1.1e-16     4e-14      38     141 ..     134     239 ..      96     242 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.1e-16
    TIGR04016  38 clfgyeiqaaatigrrftihhgyavvinknvvagddftirhgvtignrgads..lacpvigngvelganvillgditignnvtigagsvvldsipdnalvvgekar 141
                   +fg +i+  + +gr +t+ h   v +  + v g+++ i h vt+g  g+ +     p++g+gv lga+  +lg+i ig+  ti a ++v   +p     vg  ar
  MMETSP1174-20130828|12889_1 134 DVFGVDIHPGCRLGRGVTVDHATGVTLGETCVVGNNVYIMHDVTLGATGTGTefDRHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPAR 239
                  48********************************************98865411578**************************************99999988777 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.1e-05    0.0041     129     179 ..     138     184 ..     101     191 .. 0.63
   2 !   24.6   0.1     6e-09   2.2e-06     256     303 ..     192     239 ..     189     245 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
    TIGR01853 129 vkIgpgvvigddvkigdesviyanvviyeevklgknviiqagaviGsdGFG 179
                  v I pg+ +g +v++++     ++v++ e++ +g+nv i   + +G+ G G
  MMETSP1174-20130828|12889_1 138 VDIHPGCRLGRGVTVDHA----TGVTLGETCVVGNNVYIMHDVTLGATGTG 184
                  334444444444444443....35666666666666666666666666666 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 6e-09
    TIGR01853 256 kiGrnvilgGqvgvagHleigdkvvigaksgvsksveenkkyggiPar 303
                  k+G++v lg +  v g +eig+ ++i+a++ v k v+++ +  g+Par
  MMETSP1174-20130828|12889_1 192 KVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPAR 239
                  79********************************************97 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   1.3     1e-12   3.7e-10     105     212 ..     132     242 ..     114     253 .] 0.82

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1e-12
    TIGR03532 105 avimmGaviniGaeiGegtmidm..navlGgraivGknvhiGaGavlaGv.ieppsakpvvieddvliGanavileGvkvGkGavvaaGaiviedvpentvvaGvpakvik 212
                  a  + G  i  G  +G g  +d   +++lG  ++vG nv+i     l          +  ++ d v++Ga   +l  +++G+Ga +aa a+v + vp+     G pa++i 
  MMETSP1174-20130828|12889_1 132 ASDVFGVDIHPGCRLGRGVTVDHatGVTLGETCVVGNNVYIMHDVTLGATgTGTEFDRHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPARLIP 242
                  555678889999*********9633789************9887766433133444556699**********************************************995 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.6     0.048        18     117     146 ..     146     177 ..     129     187 .. 0.73
   2 !   28.9   0.1   5.4e-10     2e-07     107     168 ..     189     250 ..     181     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.048
    TIGR03308 117 iGhGavi..lPgvtiGnGavvaagavvtkdva 146
                  +G G ++    gvt+G+  vv+ +  + +dv+
  MMETSP1174-20130828|12889_1 146 LGRGVTVdhATGVTLGETCVVGNNVYIMHDVT 177
                  56666663346888999999999988888886 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 5.4e-10
    TIGR03308 107 krvtiGhdvWiGhGavilPgvtiGnGavvaagavvtkdvas.ytivaGvpaklirrrfaeeia 168
                  ++ ++G  v++G   ++l +++iG+Ga +aa a+v k v++ yt v G pa+li  + + +++
  MMETSP1174-20130828|12889_1 189 RHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAgYTAV-GLPARLIPPKATMDLS 250
                  67789**********************************8736655.9******888776665 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.037        14     247     278 ..     148     179 ..     129     188 .. 0.66
   2 !   21.1   1.5   6.9e-08   2.6e-05     372     435 ..     175     234 ..     145     241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.037
    TIGR01173 247 aGvtladPasvllekdveigqdvviepnvile 278
                  +Gvt+ + + v+l ++  +g++v i ++v+l 
  MMETSP1174-20130828|12889_1 148 RGVTVDHATGVTLGETCVVGNNVYIMHDVTLG 179
                  56666666666666666666666666665553 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 6.9e-08
    TIGR01173 372 kvNiGagtitcNYDGvnKhktvigddvfiGsdsqlvaPvkvgdgatiaaGstvtkdvpegaLal 435
                  +v +Ga    + +D     + ++gd+vf+G++++++  +++g+gatiaa + v+k vp+g  a+
  MMETSP1174-20130828|12889_1 175 DVTLGATGTGTEFDR----HPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAV 234
                  445555555555553....4569***********************************998776 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.9   2.4e-07   9.1e-05      95     184 ..     151     237 ..     137     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.4e-07
    TIGR01852  95 tkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiigglvavHQfvrigeyamigglsavskDvpPyvlvegnr 184
                  t ++ + +++G+ +++  ++ + Hd+++g +   ++ +    h +vgd +++g+ ++v   + ige a i++++ v+k vp   ++ g +
  MMETSP1174-20130828|12889_1 151 TVDHATGVTLGETCVVGNNVYIMHDVTLGAT---GTGTEFDRHPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLP 237
                  3344455668888888888889999999986...67888999************************************999755555555 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.6e-07   0.00021     112     213 ..     143     241 ..     141     249 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.6e-07
    TIGR02353 112 GakiGkevvies.lvpvvtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkv 213
                  G ++G++v++   + ++  +   +G++v + ++v+l +     +  r  + +vgd +f+G++ ++  +  iG++a ++a   ++  + +p+g    G PA  +
  MMETSP1174-20130828|12889_1 143 GCRLGRGVTVDHaTGVTLGETCVVGNNVYIMHDVTLGATGTGTEFDR--HPKVGDGVFLGAKCTVLGNIEIGEGATIAAAALVN--KPVPAGYTAVGLPARLI 241
                  89999999998846666667777888888888888765544444333..5689***********************99876554..69****99999999765 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0089       3.3      67     146 ..     153     179 ..     130     191 .. 0.54
   2 !    8.1   0.1    0.0013      0.48     127     175 ..     193     241 ..     186     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0089
    TIGR04008  67 typwkltlgdyawvgddavlytlgeitigahsvisqksylctgshdyaskhfdinatpivigekcwlatdvfvapgvtig 146
                   +   +tl                                                     ge c +  +v++   vt+g
  MMETSP1174-20130828|12889_1 153 DHATGVTL-----------------------------------------------------GETCVVGNNVYIMHDVTLG 179
                  33333344.....................................................4444444444444444433 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0013
    TIGR04008 127 igekcwlatdvfvapgvtigdgtvvgarssvfkslpankicrgnpavvv 175
                  +g+ ++l +   v   + ig+g+ + a + v k +pa   + g pa ++
  MMETSP1174-20130828|12889_1 193 VGDGVFLGAKCTVLGNIEIGEGATIAAAALVNKPVPAGYTAVGLPARLI 241
                  688899999999*******************************999876 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4    0.0004      0.15     181     251 ..     138     210 ..     109     211 .. 0.86
   2 ?    3.1   0.1     0.028        10     200     226 ..     207     233 ..     204     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0004
    TIGR03991 181 vfieegakvkegavldasdGpivigkdakveefsflegpvyige...garvkagarikggtsiGttckiGGEve 251
                  v i++g ++ +g+++d   G + +g+   v +  +++  v +g+   g++   + ++ +g+ +G++c + G +e
  MMETSP1174-20130828|12889_1 138 VDIHPGCRLGRGVTVDHATG-VTLGETCVVGNNVYIMHDVTLGAtgtGTEFDRHPKVGDGVFLGAKCTVLGNIE 210
                  559***************99.789999*************986422279999****************999886 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.028
    TIGR03991 200 Gpivigkdakveefsflegpvyigega 226
                  G i ig++a++   ++++ pv +g  a
  MMETSP1174-20130828|12889_1 207 GNIEIGEGATIAAAALVNKPVPAGYTA 233
                  8999**************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.62
# Mc/sec: 538.60
//
Query:       MMETSP1174-20130828|12895_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 177.50
//
Query:       MMETSP1174-20130828|12892_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1833.58
//
Query:       MMETSP1174-20130828|12901_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|12899_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.50
# Mc/sec: 551.71
//
Query:       MMETSP1174-20130828|12902_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 199.59
//
Query:       MMETSP1174-20130828|12903_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1382.00
//
Query:       MMETSP1174-20130828|12904_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|12905_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 244.57
//
Query:       MMETSP1174-20130828|12897_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-48  159.0  20.7    1.1e-45  152.2   9.6    2.2  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.011   13.8   1.0       0.14   10.2   0.0    2.2  2  TIGR03932 PIA_icaD: intracellular adhesion protein D
        0.4    8.4   7.8        2.3    5.9   0.6    2.6  2  TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   9.6   7.8e-49   1.1e-45       1     108 []      33     145 ..      33     145 .. 0.93
   2 !   11.1   0.4   5.4e-05     0.073      39      66 ..     154     181 ..     147     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 152.2 bits;  conditional E-value: 7.8e-49
    TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkek.....ekyslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                  ffg++G++aalvf+++GaayGtaksgvGia++gv++p+l++++iipv+maG+++iyGl+vav+++g++++      +k+s ++g++ l+aGl++GlsglaaG+aiG+vGd+gv
  MMETSP1174-20130828|12897_1  33 FFGFMGVTAALVFANIGAAYGTAKSGVGIASMGVMKPDLVMRNIIPVIMAGVLGIYGLIVAVILQGAIEKPdtdgtTKFSSFSGYAFLSAGLCCGLSGLAAGMAIGVVGDSGV 145
                  9*******************************************************************87511221458999*****************************98 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 5.4e-05
    TIGR01100  39 lilksiipvvmaGiiaiyGlvvavliag 66 
                  l +  i+ +++a  +++yGl+va++++ 
  MMETSP1174-20130828|12897_1 154 LFVGVILILIFAEALGLYGLIVALILSM 181
                  5566778889**************9975 PP

>> TIGR03932  PIA_icaD: intracellular adhesion protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0001      0.14       7      41 ..      72     106 ..      70     111 .. 0.88
   2 ?    1.4   0.5      0.06        82      11      31 ..     159     179 ..     152     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0001
    TIGR03932   7 ilrEivlfiislvfWlYclivvivligtlfeidie 41 
                  ++r+i+ +i+++v+ +Y liv ++l g++ + d +
  MMETSP1174-20130828|12897_1  72 VMRNIIPVIMAGVLGIYGLIVAVILQGAIEKPDTD 106
                  6899*********************9999876665 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.06
    TIGR03932  11 ivlfiislvfWlYclivvivl 31 
                  i+++i + ++ lY liv ++l
  MMETSP1174-20130828|12897_1 159 ILILIFAEALGLYGLIVALIL 179
                  566778889999999988875 PP

>> TIGR02972  TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.7    0.0023       3.1      21      38 ..      77      94 ..      72      99 .. 0.86
   2 ?    5.9   0.6    0.0017       2.3      15      39 ..     155     178 ..     150     184 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0023
    TIGR02972 21 FPiLsvavvggYGfivWl 38
                  P++  +v+g YG+iv +
  MMETSP1174-20130828|12897_1 77 IPVIMAGVLGIYGLIVAV 94
                 599999*********965 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0017
    TIGR02972  15 FIivvLFPiLsvavvggYGfivWll 39 
                  F+ v+L  i +  ++g+YG+iv l+
  MMETSP1174-20130828|12897_1 155 FVGVILILIFA-EALGLYGLIVALI 178
                  77777766654.579*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|12906_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1067.65
//
Query:       MMETSP1174-20130828|12908_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 476.86
//
Query:       MMETSP1174-20130828|12911_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1032.81
//
Query:       MMETSP1174-20130828|12914_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 167.66
//
Query:       MMETSP1174-20130828|12915_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|12921_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|12919_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.6   0.2      0.021   11.7   0.1    1.0  1  TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family


Domain annotation for each model (and alignments):
>> TIGR03362  VI_chp_7: type VI secretion-associated protein, VC_A0119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.2e-06     0.021     105     156 ..       5      56 ..       3      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.2e-06
    TIGR03362 105 arsrrkalewlvkrlvdaletaieasvsaadlaeleealaalaqlaeewled 156
                  +++r+++++ l + + +a++t ++a+++a++ ++l  + +++ qla ++l+ 
  MMETSP1174-20130828|12919_1   5 MKKRKALMKVLNQATSRATPTDDKAEDKAEENDQLLGTDKEALQLAVARLNM 56 
                  4566777777777799******************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 309.13
//
Query:       MMETSP1174-20130828|12923_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|12926_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1174-20130828|12925_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.88
# Mc/sec: 385.47
//
Query:       MMETSP1174-20130828|12924_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.52
# Mc/sec: 804.63
//
Query:       MMETSP1174-20130828|12929_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.60
# Mc/sec: 98.99
//
Query:       MMETSP1174-20130828|12927_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 852.85
//
Query:       MMETSP1174-20130828|12928_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 1106.07
//
Query:       MMETSP1174-20130828|12931_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 569.44
//
Query:       MMETSP1174-20130828|12934_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|12935_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 221.55
//
Query:       MMETSP1174-20130828|12937_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 808.97
//
Query:       MMETSP1174-20130828|12936_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.076    9.1   5.5      0.086    8.9   3.8    1.0  1  TIGR00596 rad1: DNA repair protein (rad1)
       0.67    5.5   7.2       0.86    5.2   5.0    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
        1.5    4.2   9.5        1.8    3.9   6.6    1.0  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular
        1.9    3.8   7.5        2.2    3.6   5.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        3.5    3.6  14.4        4.2    3.4  10.0    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.8    0.0001     0.086     339     442 ..      18     120 ..       3     138 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0001
    TIGR00596 339 reklkklakevkkkeaakenassrvnktlrkekvaskrrrvrgakeaaveklreeetdevqvvekdeeleee.ldeleegeaaeeeaandskifeikdeledidi 442
                   ++++   k+ k+++++++++s   +++ +k +   +rrr  + k+  ++  +++ td+ +  e  +  ++   del+++ + ++++ nd  i  i  el++++ 
  MMETSP1174-20130828|12936_1  18 SNETSSHHKHHKSHHKSHHKSS--HKSHGSKHRSGRSRRRRHSKKHSHSRTAESDATDDYEETEDTKGNDDDdQDELSSSANDDHNPLNDKGIGSIGSELNSLES 120
                  2333333333333333333333..356666666666666655555555555556666655555544443333689999999999999999999999999998865 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.0    0.0011      0.86      20      88 ..      37     101 ..      16     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0011
    TIGR01299  20 kevkkqavkkvvkaldrvqdeysrrsysrfeeeeddddyyapaetysrgeaaddeeegeasseateghd 88 
                  k  +k    k   +  r +    + s+sr  e +  ddy    +t     ++dd+++ e ss a + h+
  MMETSP1174-20130828|12936_1  37 KSSHKSHGSKHRSGRSRRRRHSKKHSHSRTAESDATDDYEETEDTK----GNDDDDQDELSSSANDDHN 101
                  5555556667777888888889999**************9988875....4666678888999988886 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   6.6    0.0022       1.8    1004    1095 ..      12     108 ..       3     118 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0022
    TIGR02102 1004 vgekeasektapkkeeeseadkekked.kdeskdkdkv.....aeaenkesktpagskkeneeveksskekkeekldkeaklpktaeksskllllagi 1095
                   v+++ +s++t+++++++++++k ++++ ++++ +k+++      ++++k+s++ ++++++ ++ e++++ k +++ d +++l  +a+++++ l   gi
  MMETSP1174-20130828|12936_1   12 VSNETSSNETSSHHKHHKSHHKSHHKSsHKSHGSKHRSgrsrrRRHSKKHSHSRTAESDATDDYEETEDTKGNDD-DDQDELSSSANDDHNPLNDKGI 108 
                   454444444444444333333222222123333333220000033333344433333344445555555555554.8899999999999998887776 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.2    0.0027       2.2     768     852 ..      14     101 ..       3     131 .. 0.33

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0027
    TIGR00927 768 aegekdeesggeae..qegeseekaeeeseGeieaerkgedegegeieake..aevkGeeeeeeveaeeeteaeGdedegeieaeeeGe 852
                   e+  +e+s ++++  ++ +s +k+ ++s+G  +  ++      ++ ++++  ae +  ++ ee e+  +++++ d+de    a+++ +
  MMETSP1174-20130828|12936_1  14 NETSSNETSSHHKHhkSHHKSHHKSSHKSHGSKHRSGRSRRRRHSKKHSHSrtAESDATDDYEETED-TKGNDDDDQDELSSSANDDHN 101
                  2222222222222211222233333333333333222222222222222110011111111111111.111222222333333333333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  10.0    0.0051       4.2     345     437 ..      11     101 ..       2     125 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0051
    TIGR00934 345 draeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeee 437
                    +++++ +e++++++++k+++k ++++++k++ +k+r+ +++ +++s+ +++s+  e+d ++  ++++ ++ ++   d++++ +++ nd+++
  MMETSP1174-20130828|12936_1  11 TVSNETSSNETSSHHKHHKSHHKSHHKSSHKSHGSKHRSGRSRRRRHSKKHSHSRTAESDATDDYEETEDTKGNDD--DDQDELSSSANDDHN 101
                  4455666677777777788888888888888888888888888888888888888888777765555544444433..333334555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.95
# Mc/sec: 229.24
//
Query:       MMETSP1174-20130828|12939_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.48
# Mc/sec: 404.22
//
Query:       MMETSP1174-20130828|12938_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-40  135.2   0.1    8.2e-40  134.8   0.0    1.0  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.0     2e-43   8.2e-40      30     227 ..      12     222 ..       4     223 .. 0.93

  Alignments for each domain:
  == domain 1    score: 134.8 bits;  conditional E-value: 2e-43
    TIGR00419  30 agvevavappfvdldvvkdeveseiqvaAqnvdavks..GaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvar.lkelglksvvCvgetleereaartinnvattaaaaA........lepdvvAvEPveliGtG.kpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlka 227
                  ++ve+ v pp+ +ld+v++ + ++i v+ qn+   ++   + tG ++A+m+  l +++vl+gHs+rR  l e+deli++k ++ l e gl+  + +get e+r   +t+  + ++ +a+A        ++ + +A+EPv+++G G +p ++ ea+ v+ ++r+++++ vs++ a+  r+ y +sv++ ++a  aa  +vdG++++ a l a
  MMETSP1174-20130828|12938_1  12 NQVEICVHPPYAFLDRVRQGLVADIAVGPQNIYDSSFpnTGNTGATTAKMMTSLNMEWVLLGHSDRRNSLGETDELIAEKASMvLAEEGLNICLTIGETGEQRTNDETLTILEKQLGAVAgvvpgadaWSRVALAYEPVWAVGEGaIPCAPEEAQRVHTFLREWIRThVSEDAAQACRLTYTGSVNEDNAAGYAALSEVDGFVIGRAGLDA 222
                  6799****************************8776422679**************************************99725689*********************9999999999999999999****************9789*******************9*************************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 852.58
//
Query:       MMETSP1174-20130828|12948_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   34.1   0.2    2.9e-09   34.0   0.2    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
    5.1e-09   33.1   1.6    6.1e-09   32.9   1.1    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    4.4e-07   26.9   0.0    5.2e-07   26.7   0.0    1.0  1  TIGR02730 carot_isom: carotene isomerase
    1.1e-05   22.6   0.2    1.2e-05   22.5   0.1    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    1.4e-05   21.8   0.3    1.7e-05   21.6   0.2    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.8e-05   20.7   0.2    4.9e-05   20.4   0.2    1.1  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    5.9e-05   20.2   0.2    7.3e-05   19.9   0.2    1.1  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00014   18.4   0.0    0.00017   18.2   0.0    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00015   19.4   0.7    0.00018   19.1   0.5    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00021   17.0   0.6    0.00023   16.9   0.4    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00041   17.1   0.4    0.00047   16.9   0.3    1.1  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00043   17.3   0.9    0.00053   17.0   0.6    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00073   16.3   0.2    0.00085   16.1   0.1    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0011   16.2   3.3     0.0013   15.9   2.3    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0038   14.1   0.0     0.0044   13.8   0.0    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0052   12.1   0.0     0.0056   11.9   0.0    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0071   12.6   0.3     0.0073   12.5   0.2    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0081   12.2   0.2     0.0099   11.9   0.2    1.0  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
     0.0084   12.8   0.2       0.01   12.5   0.1    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
       0.01   12.4   0.0      0.012   12.2   0.0    1.0  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.012   12.0   0.4      0.015   11.7   0.3    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.019   11.9   0.3      0.022   11.7   0.2    1.1  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.031   10.9   0.0      0.034   10.8   0.0    1.1  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
      0.031   10.8   1.6      0.038   10.6   1.1    1.1  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
      0.034   10.7   0.6      0.043   10.4   0.4    1.0  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
      0.054   10.1   0.8      0.067    9.8   0.5    1.0  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
       0.07    9.6   0.8      0.078    9.5   0.5    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   1.9e-11   2.9e-09       1      41 [.      41      81 ..      41      83 .] 0.96

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.9e-11
    TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvle 41
                 avV+G+G+gGL +A++La  G +v   e++d+pGG a  ++
  MMETSP1174-20130828|12948_1 41 AVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAHEWT 81
                 79***********************************9987 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   1.1     4e-11   6.1e-09       4      41 ..      41      78 ..      38      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 4e-11
    TIGR02733  4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCas 41
                  vv+G+Gi+Gl +aalla+ Gl+v   ea+  +GG a 
  MMETSP1174-20130828|12948_1 41 AVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAH 78
                 69*********************************996 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.4e-09   5.2e-07       1      40 [.      39      78 ..      39      82 .. 0.95

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.4e-09
    TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvlekylipggsag 40
                 +da+v+gsgiggl ta+ la  g+ v   e +  pgg+a 
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAH 78
                 8************************************986 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   8.1e-08   1.2e-05      22      59 ..      39      76 ..      25      81 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 8.1e-08
    TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59
                  D ++vG+G  GL +a  la+ gl v+  e + ++GG 
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGA 76
                 699*********************************97 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.1e-07   1.7e-05       2      38 ..      39      76 ..      38      80 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.1e-07
    TIGR01350  2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGt 38
                 +d vv+G+G+gG  +A   a+ gl+v + e  ++ GG 
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAhDSPGGA 76
                 8*****************************97888885 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   3.2e-07   4.9e-05       2      39 ..      40      77 ..      39      78 .. 0.96

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.2e-07
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAs 39
                 d vvvG+Gi Gl +A+  a+ Gl+V+  e ++++ GA+
  MMETSP1174-20130828|12948_1 40 DAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAA 77
                 89********************************9995 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   4.8e-07   7.3e-05       1      40 [.      40      80 ..      40      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.8e-07
    TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklpf.nnty 40
                 D++v+G+G  gl  A+ la+ gl+v+  ea+++ ++  +++
  MMETSP1174-20130828|12948_1 40 DAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGaAHEW 80
                 99*****************************9955415666 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.1e-06   0.00017       4      44 ..      40      78 ..      37      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.1e-06
    TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy 44
                 + vvvG+Gi GLc+a  l+    ++ +  +Ea+d  GG  +
  MMETSP1174-20130828|12948_1 40 DAVVVGSGIGGLCTAALLAHC--GLSVCCCEAHDSPGGAAH 78
                 78****************988..************999765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.5   1.2e-06   0.00018       1      36 [.      39      74 ..      39      77 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.2e-06
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                 +D vvvG G+ G  +A+ la+ Gl+V   e ++ p+
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPG 74
                 7*******************************9986 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   1.5e-06   0.00023     170     209 ..      40      79 ..      31      83 .] 0.92

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.5e-06
    TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGslls 209
                  D +vvG+G  GL +A   a+ G++v  ++ + + GG+ ++
  MMETSP1174-20130828|12948_1  40 DAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAHE 79 
                  899*********************************9875 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   3.1e-06   0.00047     131     171 ..      36      76 ..      21      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.1e-06
    TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                     +   v+G+G  Gl+ a+ la+ G +v   ea + pGG 
  MMETSP1174-20130828|12948_1  36 DETFDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGA 76 
                  44566789*******************************96 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.6   3.5e-06   0.00053       2      38 ..      41      77 ..      40      81 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.5e-06
    TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38
                 ++v+G Gi g+++a  La  G++v   e++++++  A
  MMETSP1174-20130828|12948_1 41 AVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAA 77
                 89******************************99655 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.6e-06   0.00085     144     180 ..      39      75 ..      29      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.6e-06
    TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGG 180
                  +   vvGsG  Gl +a+ l++ G +v   e +d  GG
  MMETSP1174-20130828|12948_1  39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGG 75 
                  45679*******************************9 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.3   8.8e-06    0.0013       2      38 ..      42      78 ..      41      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.8e-06
    TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRar 38
                 vvvG G+ GL  A+ La+ G+ v   Ea    GG a 
  MMETSP1174-20130828|12948_1 42 VVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAH 78
                 8*********************************986 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.9e-05    0.0044       2      41 ..      39      78 ..      38      82 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-05
    TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncy 41
                 fd ++vG+G+ G   a  la+ + +v   e  +  GG ++
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAH 78
                 9*********************************999886 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.7e-05    0.0056     535     576 ..      36      77 ..      21      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.7e-05
    TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                  +e     v+G+G  Gl+++ +la  Gl+v   e ++ +gG  
  MMETSP1174-20130828|12948_1  36 DETFDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAA 77 
                  34456789*******************************976 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   4.8e-05    0.0073     382     418 ..      41      77 ..      23      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.8e-05
    TIGR03997 382 vlvvGgGPaGleaaataarrGhrvtllereeelGGqv 418
                   +vvG+G +Gl  aa  a+ G +v  +e ++++GG+ 
  MMETSP1174-20130828|12948_1  41 AVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAA 77 
                  58*********************************85 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   6.5e-05    0.0099       2      31 ..      38      67 ..      37      71 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.5e-05
    TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavv 31
                  fd+vvvG+G  Gl +a  la+ gl++ + 
  MMETSP1174-20130828|12948_1 38 TFDAVVVGSGIGGLCTAALLAHCGLSVCCC 67
                 69***********************99985 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.9e-05      0.01       1      36 [.      40      74 ..      40      82 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.9e-05
    TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36
                 d v+vG+G+ Gl +A+ La+ + l+v   ea++++ 
  MMETSP1174-20130828|12948_1 40 DAVVVGSGIGGLCTAALLAHCG-LSVCCCEAHDSPG 74
                 88*****************666.***9999998875 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     8e-05     0.012       1      35 [.      39      73 ..      39      79 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8e-05
    TIGR01377  1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlp 35
                 fD++vvG+G+ G  +a  La  g +v   e  d p
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHDSP 73
                 9********************99999888887766 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3    0.0001     0.015       3      35 ..      39      71 ..      37      77 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
    TIGR01424  3 ydlfviGaGsGGvraarlaaalGakvaiaeedl 35
                 +d  v+G+G GG+ +a l a  G  v+ +e + 
  MMETSP1174-20130828|12948_1 39 FDAVVVGSGIGGLCTAALLAHCGLSVCCCEAHD 71
                 999**************************9865 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00014     0.022       2      38 ..      42      78 ..      41      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
    TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38
                 +v+G G+ Gl +A  La+ g +v   e +++ +gA++
  MMETSP1174-20130828|12948_1 42 VVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAH 78
                 7************************999988888876 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00022     0.034      25      51 ..      33      59 ..      25      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
    TIGR01373 25 pepkpeydviivGgGGhGlatayylak 51
                 p+  +++d+++vG+G  Gl ta  la+
  MMETSP1174-20130828|12948_1 33 PTEDETFDAVVVGSGIGGLCTAALLAH 59
                 788899****************99996 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   0.00025     0.038       3      34 ..      40      71 ..      38      80 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00025
    TIGR02485  3 dvlviGgGlaglCaaiearraGasvllleaaP 34
                 d +v+G+G+ glC+a   ++ G sv   ea  
  MMETSP1174-20130828|12948_1 40 DAVVVGSGIGGLCTAALLAHCGLSVCCCEAHD 71
                 789***********99999******9999853 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00028     0.043       4      31 ..      42      69 ..      40      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00028
    TIGR03026  4 avvGlGYvGlplaallaekgheVvgvDi 31
                 +vvG G  Gl +aalla+ g +V + + 
  MMETSP1174-20130828|12948_1 42 VVVGSGIGGLCTAALLAHCGLSVCCCEA 69
                 79**********************9886 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00044     0.067       2      34 ..      42      74 ..      41      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00044
    TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                 +++G G  Gl +A+ +a+ g++V+  E++++ g
  MMETSP1174-20130828|12948_1 42 VVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPG 74
                 8**************************998876 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00052     0.078       3      42 ..      42      81 ..      40      83 .] 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00052
    TIGR02731  3 aiagaglaglsaakyladaghtpivleardvlggkvaawk 42
                 ++ g+g+ gl++a  la  g      ea+d  gg    w 
  MMETSP1174-20130828|12948_1 42 VVVGSGIGGLCTAALLAHCGLSVCCCEAHDSPGGAAHEWT 81
                 799*******************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 288.29
//
Query:       MMETSP1174-20130828|12946_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1174-20130828|12954_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 707.69
//
Query:       MMETSP1174-20130828|12957_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 679.36
//
Query:       MMETSP1174-20130828|12955_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.78
# Mc/sec: 368.89
//
Query:       MMETSP1174-20130828|12953_1  [L=896]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-301  999.5   0.0   1.3e-236  785.5   0.0    2.5  2  TIGR00396 leuS_bact: leucine--tRNA ligase
    2.9e-77  258.3  15.4    2.6e-31  106.2   0.6    7.6  6  TIGR00422 valS: valine--tRNA ligase
    1.4e-56  190.1   5.9    5.3e-27   92.2   0.0    5.5  5  TIGR00392 ileS: isoleucine--tRNA ligase
    6.2e-55  184.4   0.8    2.1e-21   73.5   0.0    3.2  3  TIGR00395 leuS_arch: leucine--tRNA ligase
    2.6e-28   96.8   0.1    1.5e-13   48.2   0.0    4.1  3  TIGR00398 metG: methionine--tRNA ligase
    5.3e-09   33.5   0.0    6.2e-08   30.0   0.0    2.0  2  TIGR00435 cysS: cysteine--tRNA ligase
    5.6e-09   33.1   0.0    8.8e-05   19.3   0.0    2.2  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  785.5   0.0  2.3e-239  1.3e-236       1     569 [.      64     665 ..      64     669 .. 0.93
   2 !  211.5   0.1   7.2e-66   4.2e-63     604     843 .]     669     896 .]     666     896 .] 0.94

  Alignments for each domain:
  == domain 1    score: 785.5 bits;  conditional E-value: 2.3e-239
    TIGR00396   1 ykleeieekwqqkwkekkvkkveedsekkkyYiLsmfPYPsga.lHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasvekkelkqwvlkitkyaekLledLeeLeWpesvkemqrnWiGkseGveleFkiede..kekiavfttrpdtlfgvtylalaaehplvkkvakenkk..vaefikkaeqkseaertk..eekekkgvktglkainPltkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikka..........ekdlkeealteegvlvns.gefsglkseeakekiikllekekkgkkkvnYklrDWlvsRqRYWGePiPiih...ledg...............navpvpeedLPvkLPeleeldgeG.vesPlskikewvkvkkpslgkkakretdtmdtfidssWYylryldpknkekaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLltqGmvlg 569
                  y++ ++e++wq++w+e++++++ +   k+k+Y+L+mfPYPsg  lH+GH+++Yt++D+++Ry r+  ++vlhP+G+D+FGlPae++ai++gt Pa+ t+ nia +k+ql++lgfs+dw re+attd++Y ++tqwiF++l++++La + e+ vnwcp+++tvLanee+i  +G seRgd++ve+  l+qwvlkit +ae+L+++Le L+Wpe     q+ WiGkseG+++eF+++++  +e ++ fttrpdtl+gvty++la+ehplv+++++e +   v+e++ ++++ks+++rt+  +++ k+gv tg++a++Plt+ ++Pi+va+yvl +YGtgavm+vpahd rDfeFa+ + l++k+v+ ka          ++++++ea+  egv+vns +  +gl+++e k++i+ lle+e+kg k+v+YklrDW++sRqRYWGePiPi +   + +g               + ++v eedLP+kLP+ +++++    +  l++ ++w   +k+   +   ret+tm+++++s+WY+lry+dp n++ a + e+ + ++PvDlY+GG eHavlHLLYaRF+hk+l++lgl    ePf+kL+ qGm+lg
  MMETSP1174-20130828|12953_1  64 YDHAAVESRWQDYWEENQTFRAVRRPGKEKKYVLDMFPYPSGSgLHVGHPEGYTASDIMARYWRMCDFDVLHPMGWDSFGLPAEQYAIQTGTPPASTTKANIATFKRQLKSLGFSFDWAREMATTDDDYVRWTQWIFIQLYKQNLAAQSEVLVNWCPALGTVLANEEII--NGLSERGDHPVERIPLRQWVLKITMFAEELVDGLEGLDWPEGTMAAQKAWIGKSEGAQIEFEVAGQsgTEVVKAFTTRPDTLMGVTYVVLAPEHPLVDTICTEAQVesVKEYVSASARKSDMDRTAtgADRGKSGVSTGAFALHPLTGAEVPIWVADYVLGSYGTGAVMAVPAHDTRDFEFASLFGLPMKTVVVKAdvvanqseddGTAMMDEAFCGEGVTVNSgEGLDGLTTSECKDAIVGLLEAEGKGTKQVTYKLRDWVFSRQRYWGEPIPIYFpveMGEGggdprlgddhkirfdEPIAVAEEDLPLKLPHMDNYEPGTdPQGCLARATDWRYFEKDGAWFA--RETNTMPQWAGSCWYFLRYIDPDNQDAAWSLEADKSWMPVDLYVGGQEHAVLHLLYARFWHKVLHQLGLTAAPEPFQKLVHQGMILG 665
                  78999*******************************************************************************************************************************************************************9..*****************************************************************988899******************************9877567***********99988762257889**********************************************************99988899988876434445999**********5569***********************************************873222222122222222222222357899***************95556678**********99966655..*************************************************************************************98 PP

  == domain 2    score: 211.5 bits;  conditional E-value: 7.2e-66
    TIGR00396 604 ekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakkeelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkvdetalvedkvkivvqvngkvkakievakeadeeeveelakkdeevkkylenkkikkvivvknklvnvvik 843
                  ekmsks++n+++P+++vk+yGaDalRly++F++P+e+++ W++s+++G+ Rf ++v+nl++    +          + e+ + e+ r +hk++kkvted+e+   +nt+is+lm+l+n+l+  k+++   ea++++v ++sp+aPh+aee ++ lg+e  +i + +w++ de++ ++  vk+ vqvngkv+++ie+ak+ade+e +el  + e v+k +e+k+ikkvi+v+++++n+v k
  MMETSP1174-20130828|12953_1 669 EKMSKSRGNVVNPDDVVKEYGADALRLYEMFMGPLEATKPWQTSQVTGVVRFRNKVFNLASMR-YDL---------SDESMDDETARILHKTMKKVTEDVENLA-FNTAISALMVLVNHLSGLKTRAPPREAVEKVVLMISPFAPHVAEECWQILGHEG-SIARESWVTWDEKLCIDSVVKLGVQVNGKVRGTIELAKDADETEAQELGLALESVQKFVEGKTIKKVIYVPGRILNIVAK 896
                  8**********************************************************9982.222.........346778889999**************99.********************9******************************777.556666*********************************************9*************************975 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.6   4.5e-34   2.6e-31       3     189 ..      62     233 ..      60     234 .. 0.88
   2 !    3.0   0.0    0.0073       4.3     342     394 ..     234     282 ..     232     287 .. 0.79
   3 !    7.1   0.0    0.0004      0.24     198     233 ..     290     325 ..     284     334 .. 0.90
   4 !   35.6   0.0     1e-12   5.9e-10     244     336 ..     373     487 ..     369     490 .. 0.92
   5 !   92.0   0.5     9e-30   5.2e-27     396     639 ..     488     771 ..     483     777 .. 0.78
   6 !   15.2   0.0   1.4e-06   0.00084     676     726 ..     789     838 ..     780     887 .. 0.75

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 4.5e-34
    TIGR00422   3 kkYdpkevekklyekweesgvfkpdedeek.esfiiviPPPnvTGs.lHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEvey 189
                   +Yd ++ve+++++ wee+++f++     k +++++++ P ++ Gs lH+GH    +  Di++Ry rm  ++vl+++G+D  g++ ++     ++++       g           ++ +++t k+qlk+LG+s dw re  T d+++ + ++  F++ly++ l  + + lvnw+p+l t++++ E+++
  MMETSP1174-20130828|12953_1  62 AQYDHAAVESRWQDYWEENQTFRAVRRPGKeKKYVLDMFP-YPSGSgLHVGHPEGYTASDIMARYWRMCDFDVLHPMGWDSFGLPAEQ-----YAIQT------G-----TPPASTTKANIATFKRQLKSLGFSFDWAREMATTDDDYVRWTQWIFIQLYKQNLAAQSEVLVNWCPALGTVLANEEIIN 233
                  69*********************9876655377*999964.666655**************************************864.....33331......1.....222345788999****************************************************************986 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0073
    TIGR00422 342 gtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsW 394
                  g +eR++++vE +  +QW  k++ +a+++++ +e    +++ P+   +  ++W
  MMETSP1174-20130828|12953_1 234 GLSERGDHPVERIPLRQWVLKITMFAEELVDGLEG---LDW-PEGTMAAQKAW 282
                  789*********************99999888773...555.55555555555 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0004
    TIGR00422 198 yikyklangsgkdklvvATTRPEtllgdtavaVhPe 233
                   i++++a +sg + +   TTRP+tl+g t v+  Pe
  MMETSP1174-20130828|12953_1 290 QIEFEVAGQSGTEVVKAFTTRPDTLMGVTYVVLAPE 325
                  58999*****99999999***************998 PP

  == domain 4    score: 35.6 bits;  conditional E-value: 1e-12
    TIGR00422 244 kvilPlvnrkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneea......................geyqglerfearkkvvedlkeegllvkiep 336
                  +  +Pl++ ++pi   ++v   +GtG+v+  pahD+ D+e+   + l++  ++ +   + +++                      +   gl+++e+++++v  l++eg  +k+  
  MMETSP1174-20130828|12953_1 373 FALHPLTGAEVPIWVADYVLGSYGTGAVMAVPAHDTRDFEFASLFGLPMKTVVVKADVVANQSeddgtammdeafcgegvtvnsgEGLDGLTTSECKDAIVGLLEAEGKGTKQVT 487
                  6689*********9999**********************************998888887777899******************9899******************998887765 PP

  == domain 5    score: 92.0 bits;  conditional E-value: 9e-30
    TIGR00422 396 eelkdWcISRQliwghriPvwy....................eketgevvvakeeaeekektklgs.......................keleqdeDVLDTWfsSslwplstlgWpeekkdl.....kkfyptsllvtg..fDIiffWvarmillslaltg....qvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakaly 639
                   +l+dW+ SRQ++wg +iP+++                       +  + va+e+   k ++ +++                         + +++  +  W  S    l  ++  +++ +      k++ p++l v g  + ++    ar   + l++ g      Pf++++ +g++ +++g+KmSKS+gNv++P d++++yGaDalR++ +          +++++v++  +F nK++n +       ++             +d      l++++k+v+e++++  f++a++al+
  MMETSP1174-20130828|12953_1 488 YKLRDWVFSRQRYWGEPIPIYFpvemgegggdprlgddhkirF--DEPIAVAEEDLPLKLPHMDNYepgtdpqgclaratdwryfekdgAWFARETNTMPQWAGSCWYFLRYIDPDNQDAAWsleadKSWMPVDLYVGGqeHAVLHLLYARFWHKVLHQLGltaaPEPFQKLVHQGMILGADGEKMSKSRGNVVNPDDVVKEYGADALRLYEMFMGPLEATKPWQTSQVTGVVRFRNKVFNLASMRYDLSDE------------SMDDETARILHKTMKKVTEDVENLAFNTAISALM 771
                  589*********************************9865330..33455665555555444322244667777888888888888777899***********999888888876655532222223799******9775588999888888888888877776789********************************************999999889999******************75443333222............1222233446778888888888888888888775 PP

  == domain 6    score: 15.2 bits;  conditional E-value: 1.4e-06
    TIGR00422 676 vLdkllrllhpfiPflteeiyqklkekadsimlasyPeveeelvdekaeke 726
                   ++k++ +++pf+P+++ee++q l ++  si+ +s+ + +e+l      k 
  MMETSP1174-20130828|12953_1 789 AVEKVVLMISPFAPHVAEECWQILGHE-GSIARESWVTWDEKLCIDSVVKL 838
                  6799********************999.9*******999887665555555 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.4   2.6e-23   1.5e-20       4     192 ..      62     232 ..      59     243 .. 0.88
   2 ?   -2.3   0.0      0.32   1.9e+02     410     446 ..     237     273 ..     233     287 .. 0.84
   3 !   14.3   0.0     3e-06    0.0018     200     358 ..     285     430 ..     276     454 .. 0.69
   4 !   92.2   0.0   9.1e-30   5.3e-27     458     736 ..     488     778 ..     480     784 .. 0.73
   5 !    9.1   0.0   0.00011     0.066     765     821 ..     788     842 ..     781     869 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 2.6e-23
    TIGR00392   4 ekanlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGe.ihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEve 192
                  ++++ + +e+  +++wee++ f+ v++   +k++++  d  Py +G+ +h+gh    +  Di+ ry++m  f+v +  GWD  GLP E+   +                       +    +i++ k q+++lg   D+  +  t d +y+  + +++ +l+++ l +++   v+w+p+l t La+ E+ 
  MMETSP1174-20130828|12953_1  62 AQYDHAAVESRWQDYWEENQTFRAVRR--PGKEKKYVLDMFPYPSGSgLHVGHPEGYTASDIMARYWRMCDFDVLHPMGWDSFGLPAEQYAIQTGTPP----A-------------STTKANIATFKRQLKSLGFSFDWAREMATTDDDYVRWTQWIFIQLYKQNLAAQSEVLVNWCPALGTVLANEEII 232
                  68888999****************987..455567778999****9769**************************************98665443333....2.............22346789999*************************************************************85 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.32
    TIGR00392 410 wRtkkPviyrateqwFikvkeikeelleeikkvkwvp 446
                   R ++Pv   +  qw +k++ + eel++ ++   w  
  MMETSP1174-20130828|12953_1 237 ERGDHPVERIPLRQWVLKITMFAEELVDGLEGLDWPE 273
                  5889999999*******************99999954 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 3e-06
    TIGR00392 200 kdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkage.edleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekg 358
                  k+  + ++f+v++++ te     ++ + Tt P TL+  + + + p+   + +  +  e ++   k+ +++ ++k +  + ++   + k+    g  + hpl+  +         + ++d+V    GtG+v   P+h + D+e +   gl+   + v+++ 
  MMETSP1174-20130828|12953_1 285 KSEGAQIEFEVAGQSGTE-----VVKAFTTRPDTLMGVTYVVLAPEHPLVDTICT--EAQVESVKEYVSASARKSDMdRTATGADRGKSGVSTGAFALHPLTGAEV-------PIWVADYVLGSYGTGAVMAVPAHDTRDFEFASLFGLPMKTVVVKADV 430
                  677889999999999999.....46678****************99876655554..5666666666666665554312222233333333444445555555555.......56666***************************999974444444444 PP

  == domain 4    score: 92.2 bits;  conditional E-value: 9.1e-30
    TIGR00392 458 enrkdWciSRqRyWGvPipvwvaekteel.ivvgsieeleekie....................kkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklen.....ekkkevfpadlilEGsDQ.......trGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLs 736
                   + +dW  SRqRyWG Pip++   +++e   +    ++ +  i+                    + +  ++ +       d+ +++++ g  + re++++  W  S   +   ++  +++     e +k+++p+dl++ G           r W   ++ ++  + +  p++k++ +G++l ++G+KMSKs gNvv+p++v+k+yGaD+lRly ++          +++ ++ v++    ++n ++       nL +++    +l++e   ++D  +   l++++++v+e +e+  f ++++al+   +++Ls
  MMETSP1174-20130828|12953_1 488 YKLRDWVFSRQRYWGEPIPIYFPVEMGEGgGDPRLGDDHK--IRfdepiavaeedlplklphmdNYEPGTDPQGCLARATDWRYFEKD-GAWFARETNTMPQWAGSCWYFLRYIDPDNQDaawslEADKSWMPVDLYVGGQEHavlhllyARFWHKVLHQLGLTAAP-EPFQKLVHQGMILGADGEKMSKSRGNVVNPDDVVKEYGADALRLYEMFMgPLEATKPWQTSQVTGVVR----FRNKVF-------NLASMR---YDLSDE---SMDDETARILHKTMKKVTEDVENLAFNTAISALMVL-VNHLS 778
                  5689*****************9888777643322222222..2233566688899999999988445455566677788899999995.9*************6555554445554444499999999************997333333369**********98876.59*******************************************77773555566677777777777....444222.......233333...233333...333334444556678888888888888888888844.44476 PP

  == domain 5    score: 9.1 bits;  conditional E-value: 0.00011
    TIGR00392 765 eiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeea.vdealeasmkl 821
                  e++e++v +++p++p++aee +q l +   e s+  +++++ de+  +d+ ++  +++
  MMETSP1174-20130828|12953_1 788 EAVEKVVLMISPFAPHVAEECWQILGH---EGSIARESWVTWDEKLcIDSVVKLGVQV 842
                  678999*****************9998...6799999999987664145555555555 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   6.4e-17   3.8e-14       2      78 ..      68     146 ..      67     154 .. 0.87
   2 !   58.4   0.0   1.3e-19   7.7e-17     125     316 ..     169     411 ..     158     436 .. 0.81
   3 !   73.5   0.0   3.6e-24   2.1e-21     570     811 ..     614     847 ..     609     884 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 6.4e-17
    TIGR00395   2 eiekkyqkrWeeekifead.pddrekffltvayPylnGv.lhaGhlrtftivevvarfermkgknvLfplgfhvtGtPi 78 
                  ++e ++q+ Wee++ f a     +ek ++   +Py++G  lh+Gh   +t ++++ar+ rm +  vL+p+g+   G P 
  MMETSP1174-20130828|12953_1  68 AVESRWQDYWEENQTFRAVrRPGKEKKYVLDMFPYPSGSgLHVGHPEGYTASDIMARYWRMCDFDVLHPMGWDSFGLPA 146
                  689*************9874345565555556*****966**********************************99995 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 1.3e-19
    TIGR00395 125 esalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsG...egvtiveyilikfkledga.............................................lylvaatlrPetvyGvtnvfvnPeieyvivevgdek...fivskeaveklsyqklklkvieevkgkqligkkvkaPvvgkevpiLPaefvdaekatGvvlsvPahaPady 316
                  +++lkslG+s dW re+ ttd+ y r+ +W + +L ++ l  + e  v++cp  +    + ++ +G    g  +ve i ++  ++  +                                              ++ a t rP+t+ Gvt v + Pe   v     + +         a  + s  +++    +  k++   g     P++g evpi  a++v   ++tG v++vPah   d+
  MMETSP1174-20130828|12953_1 169 KRQLKSLGFSFDWAREMATTDDDYVRWTQWIFIQLYKQNLAAQSEVLVNWCPALGTVLANEEIINGlseRGDHPVERIPLRQWVLKITmfaeelvdglegldwpegtmaaqkawigksegaqiefevagqsgtEVVKAFTTRPDTLMGVTYVVLAPEHPLVDTICTEAQvesVKEYVSASARKSDMDRTATGADRGKSGVSTGAFALHPLTGAEVPIWVADYVLGSYGTGAVMAVPAHDTRDF 411
                  6789**********************************************************9988554344566665444333333333355889************************************8788888*****************9877654333333111222223333445556666666667777778888999******************************99997 PP

  == domain 3    score: 73.5 bits;  conditional E-value: 3.6e-24
    TIGR00395 570 yfyPldlrisakdLipnhLtfyifthvaifP..eefWP...rgivvnGyvl.legkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkdvlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvr 811
                   + P+dl + +++    hL++  f h  +        P   + +v +G++l  +g+k+sks+Gn++   ++v+++Gad+ rly +  + l+    +++s+v ++ +  +++ ++a   ++ sd         +d      l+k++k+v+e +enl +  a+  al  l + +   + r+  +      e +e++++++ PfaPh+aee ++++G+eg+++ +++   +e+   + v k    ++  vr
  MMETSP1174-20130828|12953_1 614 SWMPVDLYVGGQEHAVLHLLYARFWHKVLHQlgLTAAPepfQKLVHQGMILgADGEKMSKSRGNVVNPDDVVKEYGADALRLYEMFMGPLEATKPWQTSQVTGVVRFRNKVFNLASMRYDLSDES-------MDDETARILHKTMKKVTEDVENLAFNTAI-SALMVLVNHLSGLKTRAPPR------EAVEKVVLMISPFAPHVAEECWQILGHEGSIARESWVTWDEKLCIDSVVKLGVQVNGKVR 847
                  599******************999998886411223331124567778865379*************************************************9998888888888777776444.......455556668889999**************.88999999999888888887......67999**********************************999765555544433443333 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.5e-16   1.5e-13       7     132 ..     100     228 ..      94     242 .. 0.91
   2 ?    1.8   0.0     0.029        17     219     241 ..     486     506 ..     474     510 .. 0.82
   3 !   38.6   0.1     2e-13   1.2e-10     299     452 ..     637     780 ..     620     792 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.5e-16
    TIGR00398   7 lyYangk.pHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfd..rFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpd 132
                   +Y++g+ +H+Gh   + ++D++ary r+   +vl+  g D +G + e+ A + g+ P    + + + fk+++k+l+ sfd  r + Ttd++  + +q if +l+++ +  ++e+   +c++  + l++
  MMETSP1174-20130828|12953_1 100 FPYPSGSgLHVGHPEGYTASDIMARYWRMCDFDVLHPMGWDSFGLPAEQYAIQTGTPPASTTKANIATFKRQLKSLGFSFDwaREMATTDDDYVRWTQWIFIQLYKQNLAAQSEVLVNWCPALGTVLAN 228
                  689999758***********************************************************************9444567**************************9999999987776665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.029
    TIGR00398 219 flkegLkdlaitRdlvewGipvP 241
                  ++   L+d+  +R+   wG p+P
  MMETSP1174-20130828|12953_1 486 VT-YKLRDWVFSRQRY-WGEPIP 506
                  44.45**********9.*****9 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 2e-13
    TIGR00398 299 ywPamllalelkl....pkqlvahgylt.vegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnkl 452
                  +w  +l++l+l+     +++lv +g+++  +g+kmSkS+gnvv+p d++++ygad+lR y +   ple     + ++    v     nk+ Nl+         +++  l+ +    + d++ +  ++++++k+ e +e++ f+ a+++++ lv++ + l
  MMETSP1174-20130828|12953_1 637 FWHKVLHQLGLTAapepFQKLVHQGMILgADGEKMSKSRGNVVNPDDVVKEYGADALRLYEMFMGPLEATKPWQTSQVTGVV--RFRNKVFNLA-------SMRYD--LSDE----SMDDETARILHKTMKKVTEDVENLAFNTAISALMVLVNHLSGL 780
                  6888888888543222256788889977256***********************************9999999998888777..4444444443.......33444..2222....34667778899999999999**************999988765 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.069        40      35      60 ..     108     133 ..     105     137 .. 0.93
   2 !   30.0   0.0   1.1e-10   6.2e-08     248     375 ..     652     778 ..     615     801 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.069
    TIGR00435  35 sHlGhaRtlvvfDvlrrilqylgYdv 60 
                  +H+Gh   + + D+++r+ ++ ++dv
  MMETSP1174-20130828|12953_1 108 LHVGHPEGYTASDIMARYWRMCDFDV 133
                  7**********************999 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.1e-10
    TIGR00435 248 qlvkyflHngfl.kiegeKmSKSlgNfitikdllkkfdpralRll.llsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEaldddlntaealavlselvkksn 375
                  +  +  +H+g++   +geKmSKS+gN++   d++k++ + alRl+ ++    +    ++ ++++ + +  +++++  + +++dl+ + ++ ++++   ++  ++++E + ++l + +a+++l+ lv++  
  MMETSP1174-20130828|12953_1 652 EPFQKLVHQGMIlGADGEKMSKSRGNVVNPDDVVKEYGADALRLYeMFMGPLEATKPWQTSQVTGVVRFRNKVFNLAS-MRYDLSDE-SMDDETARILHKTMKKVTEDV-ENLAFNTAISALMVLVNHLS 778
                  4567889***97269****************************87244555666666777888888777777777665.66666633.455555555566666777666.69*************99987 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   3.3e-05     0.019      25      77 ..      80     135 ..      63     177 .. 0.77
   2 !   19.3   0.0   1.5e-07   8.8e-05     274     330 ..     655     712 ..     623     790 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.3e-05
    TIGR03447  25 dqevkeveaeaeaslyvcGitPydat...hlGhaatylafdlvnrvlldaghkvhy 77 
                  +q+ + v ++ + + yv  + Py +    h+Gh   y a d++ r+++  + +v +
  MMETSP1174-20130828|12953_1  80 NQTFRAVRRPGKEKKYVLDMFPYPSGsglHVGHPEGYTASDIMARYWRMCDFDVLH 135
                  677899999999***********874445*******************99988866 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.5e-07
    TIGR03447 274 rhyvhagmi.gldGekmskskGnlvlvsklraa.GeePaairl.avlaghyredrewtde 330
                  ++ vh gmi g dGekmsks+Gn+v    + ++ G +  a+rl  ++ g     + w+++
  MMETSP1174-20130828|12953_1 655 QKLVHQGMIlGADGEKMSKSRGNVVNPDDVVKEyGAD--ALRLyEMFMGPLEATKPWQTS 712
                  6789***9879*************9877665541433..555524566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.04u 0.20s 00:00:01.24 Elapsed: 00:00:00.69
# Mc/sec: 1713.95
//
Query:       MMETSP1174-20130828|12960_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|12961_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 519.16
//
Query:       MMETSP1174-20130828|12963_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.50
# Mc/sec: 245.50
//
Query:       MMETSP1174-20130828|12967_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077    9.7   7.4      0.093    9.4   5.1    1.1  1  TIGR00019 prfA: peptide chain release factor 1
       0.27    9.2   3.5       0.88    7.6   0.8    2.2  2  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
       0.44    8.8   7.4       0.14   10.3   0.9    2.2  2  TIGR02449 TIGR02449: TIGR02449 family protein


Domain annotation for each model (and alignments):
>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.1   6.8e-05     0.093       7      91 ..      25     108 ..      19     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.8e-05
    TIGR00019   7 leklesleeryeeleelLsdpevisdqkklrklskeysqleeivkkyeeykklqedlkeakellekedkelrelakeeleelekk 91 
                  ++kl   + ++++++++L+d  ++s  k+++++s    +le++ +++e+++k ++  +e++ ++  + k l+e  k+e+e  +++
  MMETSP1174-20130828|12967_1  25 IKKLRLEKDEIDKMQRQLDDDLIASASKHAEEKSALNGELETLGAVKEQLEKERKSHQETHGMIV-KFKALHEKEKQEIEAGHND 108
                  677777889999*************************************************9996.6999********9986655 PP

>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.8   0.00064      0.88      13      50 ..      22      57 ..      10      59 .. 0.76
   2 ?    5.3   0.2    0.0034       4.6      14      51 ..      48      85 ..      45     114 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00064
    TIGR01690 13 aaaladsasereeLaavirqLdalerlaeraaaaakqs 50
                 +a++ +   e++e+ +++rqLd  ++l++ a+++a+++
  MMETSP1174-20130828|12967_1 22 EAEIKKLRLEKDEIDKMQRQLD--DDLIASASKHAEEK 57
                 566677789************9..56666666666654 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0034
    TIGR01690 14 aaladsasereeLaavirqLdalerlaeraaaaakqse 51
                 a+++++a+e+++L+  +  L a+++ +e+ +++ ++++
  MMETSP1174-20130828|12967_1 48 ASASKHAEEKSALNGELETLGAVKEQLEKERKSHQETH 85
                 5678899******************9999888777665 PP

>> TIGR02449  TIGR02449: TIGR02449 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.043        58      45      64 ..      15      33 ..       5      34 .. 0.78
   2 ?   10.3   0.9   0.00011      0.14       5      63 ..      38      96 ..      34      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.043
    TIGR02449 45 eqArqkveamItrLkaLEqd 64
                 e A++  ea I +L+ LE+d
  MMETSP1174-20130828|12967_1 15 EAAQRLLEAEIKKLR-LEKD 33
                 6666678999****9.9986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00011
    TIGR02449  5 Laarv.eaLleklerLkeeNrlLraqektlveERaqLleKNeqArqkveamItrLkaLEq 63
                 ++ ++ + L+ ++ + +ee  +L  + +tl   + qL eK     q    mI++ kaL +
  MMETSP1174-20130828|12967_1 38 MQRQLdDDLIASASKHAEEKSALNGELETLGAVKEQL-EKERKSHQETHGMIVKFKALHE 96
                 566772479********************98888775.********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 423.04
//
Query:       MMETSP1174-20130828|12968_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-32  109.8   0.0    6.4e-32  108.8   0.0    1.4  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    1.8e-25   87.4   0.0    7.9e-25   85.3   0.0    1.7  2  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    4.7e-21   73.0   0.0    6.7e-20   69.1   0.0    2.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.8e-18   64.4   0.0    3.3e-18   63.5   0.0    1.3  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    3.3e-17   60.2   0.1    1.6e-16   58.0   0.1    1.9  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.1e-16   57.1   0.1    2.5e-12   44.2   0.0    2.1  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    1.2e-13   48.5   0.0    1.8e-13   47.9   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
      2e-12   44.5   0.0    6.7e-10   36.3   0.0    2.1  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
    2.2e-10   38.0   0.1    6.3e-09   33.2   0.1    2.9  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    8.3e-09   32.8   0.5      3e-08   31.0   0.0    2.0  2  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    0.00063   16.1   0.0     0.0015   14.8   0.0    1.6  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   1.7e-34   6.4e-32      66     398 ..     123     491 ..      76     494 .. 0.80

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 1.7e-34
    TIGR01265  66 fngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvieala..naganiLvPrPgfplYetlakalglevrkydllpekdweidldelea.laDek....t.valvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd....atfvplakl........askvPvlslggiskrwlv.PGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpke......ff...ekkikvlkenaelvyeelkeipgltcvkPegamyllvklele..lleei.....kdDvdFceklvkEesvillPgsalelen...ylRitltveksvleealeRikeF 398
                  + +Y+ s+G+   re+va++++ +     ++dd+++t G+s +++ v++a+   + ++ iLvP P +plY++l++ l+++   y l    dw +   ele  la+ k    t + lvvi P+nP+G+  s   +e+++++++ ++++++aDEvY++ ++ +    + f  +a l        a+k  ++s  ++sk++l   G r G+  +++        v+ +l kl++++l ++tl q  +  +++   +       ++   e ++  lk+ a+ v  +l++++g++c   +ga y + ++ l+  ++e       + D+ +c kl++   ++ +Pgs ++      ++R t+  +++++ + +e i +F
  MMETSP1174-20130828|12968_1 123 AGAYTGSQGLSIVREEVANFIEARDGLPANPDDIFITDGASAGVRAVMQAMLssDGTDAILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELERaLAEAKarelTvKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAEgmkfESFKKIAGLmkaagneaAEKLEMVSFHSVSKGFLGeCGLRGGYFELYNIDPE----VKAALYKLASVTLCSNTLGQISVGLMVNPPAEGaaayplWLeqkEATLASLKRRASKVTAALRALEGVECRPAQGALYAFPQITLSpkAVEAAqacgkQPDTFYCLKLLEQTGIVTVPGSGFGQVSgtwHFRTTFLPPEHQVDQFIELISGF 491
                  568*******************99999**********************9865567799***********************************9999985155544222232579*******************************************98766655555554422222222567789**********9637******998875543....6779**************9999987765433212222223421145677899***************************9888765223443311222579*******************99864324368999999999999888888887 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.47   1.8e+02      28      83 ..      58     110 ..      40     124 .. 0.68
   2 !   85.3   0.0   2.1e-27   7.9e-25      68     373 ..     125     463 ..     121     493 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.47
    TIGR01264  28 nPekkviklsiGdPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaia 83 
                   P k++i+ +iG+P   g+ + s  + + +   vd +k +     vG+  + +aia
  MMETSP1174-20130828|12968_1  58 FPFKEIIACNIGNPQALGQKPMS-FNREVISLIVDPEKLQ--NENVGQIYSTDAIA 110
                  57899999999999988875443.3344555555555554..34455555555555 PP

  == domain 2    score: 85.3 bits;  conditional E-value: 2.1e-27
    TIGR01264  68 GyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaieal..adaGenvlvPrPGfplyetlakaldievklynlladedweidlkeleslidd.k.....tkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg....atflalasl........ssevPilslgGlakrllv.PGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktPqe....y...f...dgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel.....e..kfkelksdvefveklveeesvfvlPgsifel 373
                   y+ ++G  + re++a++ +  r   + + dd+ ++ G+s +++ +++a+  +d  + +lvP P +ply++l+  l++++ +y l    dw +   ele    + k      k l+v  P+nP+G  +s   +e++++++  + ++++ade+y++ ++ +      f+ +a l          ++ ++s   ++k +l   G r G++      ++  +vk  l kl+   l +ntl q ++  ++ + P e    y   +   + ++  l+  a  v  al+++ G++    +Ga+y + +i l     e  +    + d+ ++ kl+e+  +  +Pgs f  
  MMETSP1174-20130828|12968_1 125 AYTGSQGLSIVREEVANFIE-ARDGLPANPDDIFITDGASAGVRAVMQAMlsSDGTDAILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELERALAEaKareltVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAEgmkfESFKKIAGLmkaagneaAEKLEMVSFHSVSKGFLGeCGLRGGYFE---LYNIDPEVKAALYKLASVTLCSNTLGQISVGLMV-NPPAEgaaaYplwLeqkEATLASLKRRASKVTAALRALEGVECRPAQGALYAFPQITLspkavEaaQACGKQPDTFYCLKLLEQTGIVTVPGSGFGQ 463
                  5999**************99.667778999***************9999743466799***********************************9999986544414222224679999****************************************87666645556666522222222457899**********963799*99865...556778999999999999999**99998876544.33433222232222222678999*********************9********98876221112112333467999*****************9964 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.8e-22   6.7e-20      62     378 ..     125     486 ..      83     491 .. 0.73

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.8e-22
    TIGR03540  62 ryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafv..npGdivlvpdPgyPvykistllaggepyelPlkeendflPdldaipedvlk.ka.....kilflnyPnnPtsavadkeffkevvefakeyniivvhdaayse.ivfdeykalsflevdgakdva..........ielhslsktyn.mtGWrigfa.vGn..keliaalgkvks.....n....vdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdllvealkki.GldvkkpkatfylWvkv...PeGytsae.........fakklleeagvvvtpGvgfGe.sGeGyirisltvseerlkeave 378
                   y  ++Gl   r++va++++ r g+  +p+   ++  G+  G+  ++ a++  +  d +lvp P yP y+  + l + ++    l e  d+  +  +++  +++ ka     k l +  P nPt+ + +   ++++++f+  ++i++  d+ y+e i+ +++k  sf ++ g ++ a          + +hs+sk +    G r g+    n   e+ aal k+ s     n    +  G +      + aa     e  + + +  k+r   +++al+ + G++++ +++++y + ++   P+ +++a+         ++ klle++g+v +pG gfG+ sG  ++r +   +e+++ + +e
  MMETSP1174-20130828|12968_1 125 AYTGSQGLSIVREEVANFIEARDGLPANPDDIFIT-DGASAGVRAVMQAMLssDGTDAILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELERALAEaKAreltvKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQEnIYAEGMKFESFKKIAGLMKAAgneaaeklemVSFHSVSKGFLgECGLRGGYFeLYNidPEVKAALYKLASvtlcsNtlgqISVGLMVNPPAEGAAAYPLWLEQKEATLASLKRRASKVTAALRALeGVECRPAQGALYAFPQItlsPKAVEAAQacgkqpdtfYCLKLLEQTGIVTVPGSGFGQvSGTWHFRTTFLPPEHQVDQFIE 486
                  588899***********************987776.69999****99999843456**************9999988887777788888887777777666553244112226678889**********************************9855556777777766655433222222233334789******9626799988642344115677788777652111121111334443333334455555445555666777899999*******9889***********99775444776665542333333436789****************945788899888888887776665 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   8.9e-21   3.3e-18      59     256 ..     124     330 ..     105     334 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 8.9e-21
    TIGR03538  59 skyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeG.aall.agaepyflnctaengfk.pdf.davpeevWkr..vqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyse.ly.....ldeaeaPvGlleaaaelGrddfkrllvfhslskrs.nvPGlrsGf 256
                   +y  ++Gl  +re +a+++e r  lpa  +p ++++   G+  ++ a++qa++ ++ + ++++P P y +y   +all  ++ py+l+  a+  ++ +++ +a+ e   ++  v+ l v +PgnPtG+ ls  +++ +++ +  ++ ++ +de y e +y     ++  ++ +Gl++aa +    +  +++ fhs+sk      Glr G+
  MMETSP1174-20130828|12968_1 124 GAYTGSQGLSIVREEVANFIEARDGLPA--NP-DDIFITDGASAGVRAVMQAMLSSDGTDAILVPYPQYPLYTAlSALLnVQTIPYYLDEAADWAMHtAELeRALAEAKAREltVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQEnIYaegmkFESFKKIAGLMKAAGNEAA-EKLEMVSFHSVSKGFlGECGLRGGY 330
                  579999*********************9..66.578889*********************************9733455257889****999876541565356776666652256699*************************************98677222223345678899999988775.566899*******752567888886 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   4.2e-19   1.6e-16      50     336 ..     129     466 ..     116     490 .. 0.71

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 4.2e-19
    TIGR03947  50 slGgeklraaladrla..gG...daekvlvthGsseaiylvltallrP..Gdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlr.alvtdrtrl.....vvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvyda....ep......l....pepsaaadrvisfgtlskaf.GlpGlrvGWc....vaPkdllaelvrlrdyltlslsPl....vellaevavehada...lieprlaearanrrrlldWaaahe..dvvrltvPeGGvaafprf............agladvtdlCerllarhgvlvvPGscfGaadr 336
                  s+G + +r+ +a+ ++  +G   +++ +++t G+s  +  v++a+l     d ++v  p y   ++l++ l++++ ++ l+ + d++++ ++l+ al+  ++r      +vv  P nPtG+++++ + +++++  ++ g vl  d+ +++ +y      e+      l     + +a+    +sf  +sk f G  Glr G+     + P ++ a+l +l   +tl    l    v l+ +   e a a    +e + a  ++ +rr+   +aa    + v++ + +G + afp++             g++  t +C +ll++ g+++vPGs fG+ + 
  MMETSP1174-20130828|12968_1 129 SQGLSIVREEVANFIEarDGlpaNPDDIFITDGASAGVRAVMQAMLSSdgTDAILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELErALAEAKAREltvkgLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAEgmkfESfkkiagLmkaaGNEAAEKLEMVSFHSVSKGFlGECGLRGGYFelynIDP-EVKAALYKLAS-VTLCSNTLgqisVGLMVNPPAEGAAAyplWLEQKEATLASLKRRASKVTAALRalEGVECRPAQGALYAFPQItlspkaveaaqaCGKQPDTFYCLKLLEQTGIVTVPGSGFGQVSG 466
                  778888888888755311332226789*****************99753269****************************************9626666665531222268899********************************9999888642122221111112110022333444689********9899******852221444.67787777765.444433331112333333333333331112344444444455566665555431367**********************99998878888899********************9764 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   6.7e-15   2.5e-12      70     225 ..     125     286 ..     102     359 .. 0.77
   2 !   11.0   0.0   8.4e-05     0.031     357     390 ..     446     480 ..     429     490 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 6.7e-15
    TIGR03542  70 GyGpeqGldllreaiaeeeykgr...idpeeifisdGakcdvarl.lelfgsdkt..vavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslP 225
                   y   qGl+++re++a+   +      +p++ifi+dGa + v  + + +++sd t  + v  P yP y+  + l    ++    ++  +  + ++  e ++  + ++e +v+ +++  P nPtG  l++ +++++++++ +++++++ d  y+  i  + + 
  MMETSP1174-20130828|12968_1 125 AYTGSQGLSIVREEVANFIEARDglpANPDDIFITDGASAGVRAVmQAMLSSDGTdaILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELERALAEAKARELTVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAEGMK 286
                  58899*********9975544447789**************9765167888886622678899******98777665444333333444455566778888888888889999***************************************9988777664 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.4e-05
    TIGR03542 357 kllkeaevvgtPGsGfGs.sGeGfvrlsalgkred 390
                  kll+++ +v++PGsGfG+ sG+ ++r + l  +++
  MMETSP1174-20130828|12968_1 446 KLLEQTGIVTVPGSGFGQvSGTWHFRTTFLPPEHQ 480
                  69***************758999999887765555 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   4.8e-16   1.8e-13      60     185 ..     135     278 ..     111     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 4.8e-16
    TIGR01141  60 lkealakylg......veeenillgnGsdelielliraflepg..davlvleptysmYevsakiagaevkevplked..gqedleavle......aakekvklvflasPnnPtGnllkreeiekvleev.edalVV.vDeAYie 185
                  ++e++a++++       ++++i++++G+  +++++++a+l +   da+lv+ p y +Y   +++ +++ + + l+e   + +++++++       a++  vk   +  P nPtG++l++ ++e++++ + ++++V+  De Y e
  MMETSP1174-20130828|12968_1 135 VREEVANFIEardglpANPDDIFITDGASAGVRAVMQAMLSSDgtDAILVPYPQYPLYTALSALLNVQTIPYYLDEAadWAMHTAELERalaeakARELTVKGLVVIAPGNPTGQCLSSGNMEDIIQFSsSHGIVLfADEVYQE 278
                  5667777777777777899*******************9986559*************************99999988866666665554423333334455567899********************9668888736****98 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.8e-12   6.7e-10      22     185 ..     115     284 ..     102     360 .. 0.79
   2 !    6.4   0.0    0.0021      0.79     300     344 ..     439     485 ..     368     489 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.8e-12
    TIGR03537  22 lldavpe.vsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailr....etki..vwinyphnptGaeapasylkevaelareygiilasdecyae.iysee 185
                   ld +p     y    G + +re +a+++e r g+  +pd +++ + G+   +  +  a+l  ++    ++++ p yp y   +   + ++++  l +  ++ ++  ++e+a+ +    e ++  + +  p nptG   ++  ++++++++  +gi+l++de y e iy e 
  MMETSP1174-20130828|12968_1 115 YLDHIPGgAGAYTGSQGLSIVREEVANFIEARDGLPANPD-DIFITDGASAGVRAVMQAMLS-SDGTDAILVPYPQYPLYTALSALLNVQTIPYYLDEAADWAMHTAELERALAEakarELTVkgLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQEnIYAEG 284
                  567777524579999************************9.677788999999988888888.566788999**********99999***************9999999887654111133332256678**********************************86488765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0021
    TIGR03537 300 daksyalrllee.GivvapGeafgag.eeeyvrvalvptleeceeai 344
                   +  y+l+lle+ Giv  pG+ fg+  ++ ++r +++p   + ++ i
  MMETSP1174-20130828|12968_1 439 PDTFYCLKLLEQtGIVTVPGSGFGQVsGTWHFRTTFLPPEHQVDQFI 485
                  4667999*998549**********96245679999999888777766 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.7e-11   6.3e-09      49     228 ..     123     330 ..     106     488 .. 0.60

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.7e-11
    TIGR03539  49 apgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelv.allPtllGlgagdtvviPevayPtyevgarlagaeav..aaddlteldp................ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.......avsvldpevcggdle..gllavhslskrs.nlagyragf 228
                  a +y   +G + +re +++ +e r g ++ ++++++ + G+   v a++ ++l  + +d++++P   yP y   ++l   +++    d+ +++                   +vk + + +P+nPtG+ ls  +++ +++++ ++g+v+++de y e  + +         ++ l +   ++  e  ++++ hs+sk      g r g+
  MMETSP1174-20130828|12968_1 123 AGAYTGSQGLSIVREEVANFIEARDGLPA-NPDDIFITDGASAGVrAVMQAMLSSDGTDAILVPYPQYPLYTALSALLNVQTIpyYLDEAADWAMhtaeleralaeakareLTVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAEGmkfesfkKIAGLMKAAGNEAAEklEMVSFHSVSKGFlGECGLRGGY 330
                  5679999999*****************95.6888888888766554999**********************86555544444422234433322211122223333322223455577889**********************************998775545666666444444444333333125678888888531345555555 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     8e-11     3e-08      55     175 ..     141     283 ..     135     332 .. 0.73
   2 ?   -1.6   0.0      0.64   2.4e+02     226     273 ..     366     412 ..     360     434 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 8e-11
    TIGR01140  55 eaaaayygld..aesvlavnGaqeaiqllprl...lapkrv.lvlaptyseyaralraagaevvels................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae 175
                  +++ a+ gl+  ++++ ++ Ga + +++++++      +++ lv+ p+y  y +  +  +++   +                 +l+e++a+  +++ lvv+ P NPtG++l+  +++++++  +++g++l  DE + +   ae
  MMETSP1174-20130828|12968_1 141 NFIEARDGLPanPDDIFITDGASAGVRAVMQAmlsSDGTDAiLVPYPQYPLYTALSALLNVQTIPYYldeaadwamhtaelerALAEAKARELTVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSSHGIVLFADEVYQENIYAE 283
                  5555566665558899999999999999888733222223347788888888887777777766666889999999888554444444444478899*************************************998766554 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.64
    TIGR01140 226 vngpAqavgeaaladeawqkatrarlaaererlaallaalgllevvgg 273
                  vn pA+ +++  l  e  ++at a l++++ ++ a+l+al+++e  ++
  MMETSP1174-20130828|12968_1 366 VNPPAEGAAAYPLWLE-QKEATLASLKRRASKVTAALRALEGVECRPA 412
                  6667776666666544.4678889999999999999999999887664 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06    0.0015     157     285 ..     155     277 ..     132     291 .. 0.70
   2 ?   -2.6   0.0      0.78   2.9e+02     468     487 ..     445     464 ..     437     473 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-06
    TIGR03801 157 dlfaveGgtaamcyifdslkaneLlkkgDkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkele......kLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvyg 285
                  d+f ++G+ a++  +++++ +       D i +  P +  y  ++ l       ++++  +   d++a w +  +ele      k ++ ++k l+v+ P nP++  +s+ ++e +++  ++    +++ +D+vy 
  MMETSP1174-20130828|12968_1 155 DIFITDGASAGVRAVMQAMLSSD---GTDAILVPYPQYPLYTALSAL-------LNVQTIPYYLDEAADWAMHTAELEralaeaKARELTVKGLVVIAPGNPTGQCLSSGNMEDIIQFSSS--HGIVLFADEVYQ 277
                  67777777777766666554442...345555555555555555544.......444444555555666777777777322223567889***********************99999877..6789999***96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.78
    TIGR03801 468 frlaeessivLLkgegfkse 487
                  ++l e+++iv ++g+gf+  
  MMETSP1174-20130828|12968_1 445 LKLLEQTGIVTVPGSGFGQV 464
                  6899*************853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.14s 00:00:00.73 Elapsed: 00:00:00.69
# Mc/sec: 956.44
//
Query:       MMETSP1174-20130828|12969_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-15   52.3   0.0    3.7e-11   40.3   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.3e-13   46.7   0.1    9.5e-11   38.6   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.3e-13   45.7   0.0    2.6e-12   43.1   0.0    1.8  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.3e-09   34.7   0.7    1.7e-06   24.4   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.3e-07   28.0   0.1    0.00069   16.5   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00041   17.0   0.3       0.25    7.8   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00093   16.8   0.2     0.0023   15.5   0.1    1.6  1  TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family
     0.0025   13.9   0.0     0.0086   12.1   0.0    1.7  2  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0034   13.8   0.0       0.45    6.8   0.0    2.1  2  TIGR00595 priA: primosomal protein N'
     0.0083   12.2   0.0      0.041    9.9   0.0    1.8  2  TIGR00963 secA: preprotein translocase, SecA subunit
  ------ inclusion threshold ------
      0.016   11.3   0.0      0.028   10.4   0.0    1.3  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
      0.017   12.1   0.0      0.055   10.4   0.0    1.7  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00018     0.061       7      48 ..     100     141 ..      94     150 .. 0.85
   2 !   40.3   0.0   1.1e-13   3.7e-11     223     350 ..     340     468 ..     314     475 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00018
    TIGR00614   7 fglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                   g+    pvq  +  ++  grd+l +  tG Gk L + lp +
  MMETSP1174-20130828|12969_1 100 PGFTTPSPVQAATWPVAALGRDCLAIAKTGSGKTLGFLLPVL 141
                  566666789999999999*******************99976 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.1e-13
    TIGR00614 223 efkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk.siesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekk 350
                  +  g+  i++ + + +v +++a  + +g++a +   + ++s+r++  +kf    + vv+at     G++   + +vi y+lp  +   Y   +GR GR g + e+  +++ +D     +l+  +k+  +
  MMETSP1174-20130828|12969_1 340 KRAGQRVIVFANMKTTVAELTAYCRAQGMKADSLSGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQVINYELPMdDFQDYVHRIGRTGRAGATGEADSIFTSGDKVHAPELIRIIKEAGQ 468
                  5678889******************************************************9999*****************73699**************************9999999988887655 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0022      0.75       4      52 ..      95     143 ..      92     146 .. 0.86
   2 !   38.6   0.0   2.8e-13   9.5e-11     224     341 ..     343     461 ..     332     476 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0022
    TIGR01389   4 vLkevFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLll 52 
                  +L+   G+ +  + q++     + grd+la+  tG Gk l + +P L +
  MMETSP1174-20130828|12969_1  95 LLRAQPGFTTPSPVQAATWPVAALGRDCLAIAKTGSGKTLGFLLPVLAR 143
                  567777888888888888888899*********************9865 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2.8e-13
    TIGR01389 224 eksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk.nlesyyqeaGRaGRDGlkaeaillyseaDlallkrlie 341
                  ++  i++a+ +  v el+++ +++g++a    +  s+++R+ + +kF    v vv+at     G+d   +  vi ++lP  +   y    GR GR G   ea  ++++ D + + +li+
  MMETSP1174-20130828|12969_1 343 GQRVIVFANMKTTVAELTAYCRAQGMKADSLSGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQVINYELPMdDFQDYVHRIGRTGRAGATGEADSIFTSGDKVHAPELIR 461
                  46679**************************************************************************6369***************************988877776 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   7.6e-15   2.6e-12      13     345 ..     104     437 ..      98     454 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 7.6e-15
    TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkgl.kvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllssk....daeklfkdlravvvDElHeLlgskRG.dlleLaLarLrrlapelrvvglsAT..vgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleei.....kkarttlvFtNtRsq.aEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspk.gvaRllQRiGRsnH 345
                  +p + Q +++  a+ g+++l ia TG+GKTl   lp+l+++++++k+++g   +l ++P + La +i+   ++  +++g++  v+   G ++ +++ r+ ++  +i++ Tp  +  +l  +    da      l ++v+DE   +l      d  +++ +  +++    +++  sAT  ++  e aa++l++  k    ++v +  +k ++ +s+ ++ ++ +  +G   +  + ++++       ++ + ++vF N ++  aEl+  a  +a+   a+ +    g  +++qRe   +++k+g + +v++T     G+D + +++vi+   p       + RiGR++ 
  MMETSP1174-20130828|12969_1 104 TPSPVQAATWPVAALGRDCLAIAKTGSGKTLGFLLPVLARCVREKKKSNGApLALIMAPTRELALQIAAEATKFGAAVGCRS-VA-VYGGAPREAQVRKLQRGCEIIVGTPGRIGDVLDVRggggDAVVSCDALCMLVLDEADRMLDMGFEkDIRAICWTAYAEWPR--QTFLYSATwpLAVQEVAADLLTKPVK----VTVGSGGEKLTASRSVTQR-VHVVDASGNARWDVFVRLIAPFgtkgkRAGQRVIVFANMKTTvAELT--AYCRAQGMKADSL---SGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQVINYELPMdDFQDYVHRIGRTGR 437
                  57889*************************************777777665156889**********999999888877653.44.46889999999**************998765544322227777889999*********99875441455666666666655..56667777325555555555555544....5555545555555555555.999999999999999888876622222456789*****987526664..2233333323344...59999****************************************9996257889999999874 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   4.9e-09   1.7e-06      31     126 ..      99     201 ..      84     220 .. 0.75
   2 !    8.6   0.1    0.0003       0.1     317     375 ..     381     440 ..     339     452 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.9e-09
    TIGR03817  31 aaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp.....ratalylaPtkalaadqlravkelee.rdvr.aatydGdtpaeerewi 126
                  + G ++p   qa++  +a+ G++    + t sGk+l++llPvl++ ++++        al +aPt+ la    +  +++    + r +a+y G   +++ + +
  MMETSP1174-20130828|12969_1  99 QPGFTTPSPVQAATWPVAALGRDCLAIAKTGSGKTLGFLLPVLARCVREKkksngAPLALIMAPTRELALQIAAEATKFGAaVGCRsVAVYGGAPREAQVRKL 201
                  4588899999999999*********99*****************999884334435579**********9988888888765444415666665555444444 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0003
    TIGR03817 317 drreleralkdGellgvaatnalelGvdisGldavviaGfPGt.vaslwqqaGraGrrgq 375
                  +r    r++k+G +  v at+    G+di G++ v+    P      +  ++Gr+Gr+g 
  MMETSP1174-20130828|12969_1 381 QRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQVINYELPMDdFQDYVHRIGRTGRAGA 440
                  455667899********************************75267888999****9986 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06   0.00069      22      80 ..     116     180 ..     108     199 .. 0.80
   2 !    9.4   0.0    0.0003       0.1     309     361 ..     363     415 ..     341     449 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-06
    TIGR04095  22 knngrGilkma.tGtGktltaLalvskl.....aekikslvvvvvvPykhLveqWakeaekFgle 80 
                  ++ gr  l++a tG+Gktl  L  v +      +++++  + ++++P ++L+ q a+ea kFg  
  MMETSP1174-20130828|12969_1 116 AALGRDCLAIAkTGSGKTLGFLLPVLARcvrekKKSNGAPLALIMAPTRELALQIAAEATKFGAA 180
                  6678999999879******998766555566645556677889*******************964 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0003
    TIGR04095 309 geelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairta 361
                   +  g+++++   + s+++Re+ +++f+sg++ +++a      G+D+  i++ 
  MMETSP1174-20130828|12969_1 363 CRAQGMKADSLSGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQV 415
                  36789*****************************************9988775 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00073      0.25     264     346 ..     127     212 ..     121     223 .. 0.69
   2 !    7.2   0.0    0.0011      0.37     476     524 ..     359     409 ..     346     416 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00073
    TIGR00643 264 dVGsGKTvVavlallavi......esGyq.valmaPTeiLAeQhyeklrelleplgie.valLtgslkkkkkkelleeiasGeielvvGTh 346
                    GsGKT+  +l +la        ++G   +++maPT  LA Q + +++++ + +g + va+  g    + ++++  +++ G  e++vGT 
  MMETSP1174-20130828|12969_1 127 KTGSGKTLGFLLPVLARCvrekkkSNGAPlALIMAPTRELALQIAAEATKFGAAVGCRsVAVYGG----APREAQVRKLQRG-CEIIVGTP 212
                  579****99999888654122222355552456****************9999887752444443....3455566677766.57888885 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0011
    TIGR00643 476 lkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdv 524
                  l+++   + ++ + l g  ++ ++e+ +++F+++ v++++aT v   G+d+
  MMETSP1174-20130828|12969_1 359 LTAYCraQGMKADSLSGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDI 409
                  444444345667778888999999999999999999999999998888886 PP

>> TIGR01168  YSIRK_signal: gram-positive signal peptide, YSIRK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   6.8e-06    0.0023      14      28 ..     386     400 ..     376     404 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.8e-06
    TIGR01168  14 IRKlsvGvaSVlvas 28 
                  IRK++ G++SV++a+
  MMETSP1174-20130828|12969_1 386 IRKFKSGAVSVVIAT 400
                  9*************8 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.3     1e+02      36      77 ..     126     177 ..     118     179 .. 0.70
   2 !   12.1   0.0   2.5e-05    0.0086     441     513 ..     341     413 ..     332     443 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.3
    TIGR00631  36 GvtGsGktft.....ianviakvqkP.....tlvlahnktLaaqLyeelkel 77 
                    tGsGkt+      +a+ +++ +k      +l++a+ + La q+++e  ++
  MMETSP1174-20130828|12969_1 126 AKTGSGKTLGfllpvLARCVREKKKSngaplALIMAPTRELALQIAAEATKF 177
                  569999997522222677777666532333589***********99997665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.5e-05
    TIGR00631 441 aknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevs 513
                  + ++rv+v +  k    +lt y + +g+k+  l  +    +r + ir+++ g + v++  ++   GlD+  + 
  MMETSP1174-20130828|12969_1 341 RAGQRVIVFANMKTTVAELTAYCRAQGMKADSLSGNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIE 413
                  5689*********999****************************************************97665 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0048       1.6       5      83 ..     127     211 ..     123     215 .. 0.74
   2 !    6.8   0.0    0.0013      0.45     280     336 ..     355     414 ..     337     429 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0048
    TIGR00595   5 vtGSGKtEvylk.viek.vlakgks.....vlvLvPEiaLtaqllkrlkerfgsevavlhskl.sasekkqawrkvklgeakvviGa 83 
                   tGSGKt  +l  v+++ v++k+ks     +l++ P   L+ q+ ++ +++fg++v+    ++ + + ++ + rk+++g  ++++G+
  MMETSP1174-20130828|12969_1 127 KTGSGKTLGFLLpVLARcVREKKKSngaplALIMAPTRELALQIAAE-ATKFGAAVGCRSVAVyGGAPREAQVRKLQRG-CEIIVGT 211
                  59*****9887524444144555556666689***********9988.578******9999961555677778888777.5677786 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0013
    TIGR00595 280 elkkllpkariarldsDttr...rkkalealleqfaagkidiliGtqmiaKGldfpkvtl 336
                  ++++l    r + +  D ++   ++ + e+++++f++g + ++i t + a+Gld + ++ 
  MMETSP1174-20130828|12969_1 355 TVAELTAYCRAQGMKADSLSgnrSQSQRESTIRKFKSGAVSVVIATDVAARGLDIKGIEQ 414
                  55555555666666666665111455667899*********************9988875 PP

>> TIGR00963  secA: preprotein translocase, SecA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.14        49      68      91 ..     118     141 ..     113     149 .. 0.81
   2 !    9.9   0.0   0.00012     0.041     407     471 ..     344     410 ..     316     445 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.14
    TIGR00963  68 lhkgkiaEmktGEGktLvavlpay 91 
                  l ++ +a  ktG GktL  +lp+ 
  MMETSP1174-20130828|12969_1 118 LGRDCLAIAKTGSGKTLGFLLPVL 141
                  667778889********9999975 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00012
    TIGR00963 407 rPvLvGttsveksEllskllkekrikhevL..naknherEaeiiaqaGkkgavtiatnmAGRGtDik 471
                  + v+v      +   l+++ + +++k + L  n  + +rE++i +      +v+iat++A RG Dik
  MMETSP1174-20130828|12969_1 344 QRVIVFANMKTTVAELTAYCRAQGMKADSLsgNRSQSQRESTIRKFKSGAVSVVIATDVAARGLDIK 410
                  55555554445555667777778888887733555999*****998888899**************8 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.3e-05     0.028     268     292 ..     123     147 ..     119     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.3e-05
    TIGR01407 268 lIeAatGtGKtlgYLLpalylakee 292
                  l  A tG+GKtlg+LLp+l+    e
  MMETSP1174-20130828|12969_1 123 LAIAKTGSGKTLGFLLPVLARCVRE 147
                  55699*************9987733 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.4   4.9e+02       6      22 ..     126     142 ..     123     180 .. 0.58
   2 ?   10.4   0.0   0.00016     0.055     126     318 ..     236     437 ..     233     454 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.4
    TIGR01587   6 APtGyGKteaallwalk 22 
                  A tG+GKt   ll  l 
  MMETSP1174-20130828|12969_1 126 AKTGSGKTLGFLLPVLA 142
                  67999999777664444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00016
    TIGR01587 126 SvliiDEvhayeeytkal.llall.evlkdvdvkillmsAtlpkllkeylekielveenealdlke.....ekrfenqrisliekdkleeisslerlleal.....kkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapidsL...iQRlGRlaR 318
                   +l++DE++ + +   ++ + a+   + +++  +  l sAt p  ++e + +      + ++         ++r+  qr+ ++++  +    +  rl++ +      ++++v++++N   +  el    + ++ +   + l +  +++ re     +++++k+ +  v++aT v+  +lDi  ++ +i    p+d     + R+GR  R
  MMETSP1174-20130828|12969_1 236 CMLVLDEADRMLDMGFEKdIRAICwTAYAEWPRQTFLYSATWPLAVQEVAADLLTKPVKVTVGS-GgekltASRSVTQRVHVVDASGNARWDVFVRLIAPFgtkgkRAGQRVIVFANMKTTVAELTAYCRAQGMK--ADSLSGNRSQSQRE----STIRKFKSGAVSVVIATDVAARGLDIKgIEQVINYELPMDDFqdyVHRIGRTGR 437
                  5789999998877766665666551455599999999999999555544444333222221111.1123335777788888888777777777777765442111155667888888877777777777755655..55666666666665....56************************6478888888888876222456666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 916.49
//
Query:       MMETSP1174-20130828|12973_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1074.77
//
Query:       MMETSP1174-20130828|12976_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1165.37
//
Query:       MMETSP1174-20130828|12982_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 647.38
//
Query:       MMETSP1174-20130828|12987_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1154.90
//
Query:       MMETSP1174-20130828|12983_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 822.99
//
Query:       MMETSP1174-20130828|12990_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 889.19
//
Query:       MMETSP1174-20130828|12985_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 964.99
//
Query:       MMETSP1174-20130828|12994_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 598.78
//
Query:       MMETSP1174-20130828|12996_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 870.41
//
Query:       MMETSP1174-20130828|12997_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.49
# Mc/sec: 2136.07
//
Query:       MMETSP1174-20130828|13002_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|13003_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 546.29
//
Query:       MMETSP1174-20130828|13004_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 535.09
//
Query:       MMETSP1174-20130828|13001_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.53
# Mc/sec: 819.33
//
Query:       MMETSP1174-20130828|13006_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 560.15
//
Query:       MMETSP1174-20130828|13010_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 689.28
//
Query:       MMETSP1174-20130828|13011_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 743.94
//
Query:       MMETSP1174-20130828|13013_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 602.00
//
Query:       MMETSP1174-20130828|13018_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.44
# Mc/sec: 407.97
//
Query:       MMETSP1174-20130828|13015_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   10.8   0.0       0.71    5.6   0.0    2.2  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0    0.0011       4.3     130     158 ..      31      59 ..      26      79 .. 0.86
   2 ?    5.6   0.0   0.00017      0.71     117     155 ..      85     123 ..      68     124 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0011
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                  +g ta+++A   ++ + +++L ++ga++ 
  MMETSP1174-20130828|13015_1  31 NGWTAVHMATWSNQAKALEILAARGADLT 59 
                  689***********************986 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00017
    TIGR00870 117 selandestseftkgitalilAihkqnyeivklLlekga 155
                  s+ + d+  s   +g t  ++A++ +n ei++ L ++g+
  MMETSP1174-20130828|13015_1  85 SNTVPDSLRSANNNGATVAHIAAEYDNTEILEFLAKNGY 123
                  56778888899999*********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.46
# Mc/sec: 654.21
//
Query:       MMETSP1174-20130828|13020_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-09   33.4  10.3    1.6e-08   30.9   7.1    1.9  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   7.1   3.9e-12   1.6e-08     465     627 ..     216     357 ..     168     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 3.9e-12
    TIGR00870 465 fdpteieealfafalvlswlnllyiargnqhlGplqimlgrmilrDllrFlfiylvvLlaFavalvqlykyydekklneesslkpirceieenaystlletlleLFwaiiGlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeeade 627
                  f ++ i+ +  a+   l w +l+ ++   +++G  +  l+      l  F+++ ++++++Fa+a  + y     k+++               +y+t+ +++ +L++a++G  d+ +++  + +f+g l f ++v+i ++++LN+ IA++++ y +  e +++
  MMETSP1174-20130828|13020_1 216 FYARAISIGMQAINTFLNWFKLIMFLNHLPSFGLVTDTLNEAAP-ELGSFFLVLFIIMFGFAQAHAI-Y---FGKNVK---------------SYRTVADSVHTLWRAMLGDFDFDETYTIN-RFMGPLFFYVFVLIGILIILNIVIAIISDAYISADETRKQ 357
                  66788999999*******************************99.******************9655.3...345553...............8******************9998887765.9******************************876665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.62
# Mc/sec: 885.60
//
Query:       MMETSP1174-20130828|13025_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 583.69
//
Query:       MMETSP1174-20130828|13024_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.66
# Mc/sec: 937.92
//
Query:       MMETSP1174-20130828|13029_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 486.71
//
Query:       MMETSP1174-20130828|13028_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|13030_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.55
# Mc/sec: 513.56
//
Query:       MMETSP1174-20130828|13035_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.70
# Mc/sec: 477.05
//
Query:       MMETSP1174-20130828|13036_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1704.86
//
Query:       MMETSP1174-20130828|13039_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 631.66
//
Query:       MMETSP1174-20130828|13042_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-274  909.1   5.0     3e-274  908.8   3.4    1.1  1  TIGR01792 urease_alph: urease, alpha subunit
    1.5e-37  125.7   0.0    2.9e-37  124.9   0.0    1.5  1  TIGR00192 urease_beta: urease, beta subunit
    5.7e-10   37.2   2.7    3.5e-09   34.6   0.0    2.8  3  TIGR00193 urease_gam: urease, gamma subunit
    2.6e-05   21.1   0.9        0.5    6.9   0.0    3.2  3  TIGR01224 hutI: imidazolonepropionase
     0.0009   16.1   0.1      0.016   12.0   0.1    2.1  2  TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type
     0.0045   13.8   0.0       0.25    8.1   0.0    2.2  2  TIGR02967 guan_deamin: guanine deaminase


Domain annotation for each model (and alignments):
>> TIGR01792  urease_alph: urease, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  908.8   3.4  4.3e-277    3e-274       2     568 .]     211     786 .]     210     786 .] 0.98

  Alignments for each domain:
  == domain 1    score: 908.8 bits;  conditional E-value: 4.3e-277
    TIGR01792   2 isreqyadlyGptvGdkvrlgdtdlfvkvekdlttyGdeskfGGGkvlrdGmgqeatlkrddaevldlvitnalildy.tgiykadiGiknGkivaiGkaGnpdlmdgvd..livGastevisgegkivtaGgldthvhyiepelveaaldsGittligGGtGpadGtkattvtpgkfylkrllkavdglplniGllgkGsaskeealveqieaGaaglkvhedwGataaaidkalsvadeydvqvavhtdtlneaGfvedtlaalkgrtihsyhteGaGGGhapdilkvveyenvlpsstnptlpytvntidehldmlmvchnlnpkipedvafaesrirketiaaedvlqdmGalslissdsqamGrvGevvlrawqladkmkkqrGslegd........seyndnnrvkryvakytinpaiahGisdlvGsievGkladlvlwepkffgvkpdlvlkgGliatavaGdanasiptpepvlerklfgalgralqstsvtfvskaaldkgikeklglekkllpvkntrsigkkdmklnsalpklevdpqtydvkvdgelitvepadelplaqryflf 568
                  +++++y+ ++Gpt+Gd v+lgdtdl+v+ve+d+++yGde+kfGGGkvlrdGmgq +      a+vldlvitnal++d   g++k diGik  k+v+iGkaGnpd+m+gv+  +ivG  tev +gegki+taG +d hvh+i p+++++a++sGittl+gGGtGp+ Gt+att+tp++  ++++l+a+d +p+n+ ++gkG++s+++ l ++i+aGa+glk+hedwG+t+++i+++lsva+e+dvqv++htdtlne+G ve+t+aa+kgrtih+yh+eGaGGGhapdil+v++++nvlpsstnpt+pytvnt+dehldmlmvch+l++++pedvafaesrir +t+ aedvl+dmGa+s+issdsqamGrvGev+ r+wq+a+kmkk rG l++d        s   dn+rv+ry+akyt+npa+ahG+s+l+Gs+evGk+adlvlw+p++fg+kp+l+lkgG ia+a++Gd+nasip +epv++r++fga+g+a   ts++fvs  +   g  +k+ l+k+++pv+n+r +gk+dm+ln+alp ++vdp+ty v++dg+ + + p +el+laqryflf
  MMETSP1174-20130828|13042_1 211 VTHSEYCAMFGPTTGDLVHLGDTDLWVRVERDMAVYGDECKFGGGKVLRDGMGQMSGCFA--ADVLDLVITNALLIDVvMGVIKCDIGIKGNKVVGIGKAGNPDVMEGVTpgMIVGVNTEVLAGEGKIITAGAFDAHVHFICPQIITEAISSGITTLLGGGTGPNTGTNATTCTPAPSQMEMMLQATDDMPVNLAFTGKGNSSSPAGLGDIIKAGAVGLKLHEDWGTTPSTIQSCLSVAEEHDVQVTIHTDTLNESGCVEQTIAAFKGRTIHTYHSEGAGGGHAPDILVVCGQANVLPSSTNPTRPYTVNTLDEHLDMLMVCHHLDASVPEDVAFAESRIRGKTMEAEDVLHDMGAISIISSDSQAMGRVGEVIARTWQTASKMKKIRGVLPEDveanseagSTSGDNFRVRRYLAKYTMNPAVAHGMSHLIGSVEVGKFADLVLWDPAYFGAKPELILKGGTIAYAQMGDPNASIPPCEPVTMRPMFGAMGKAAAPTSIAFVSGLCASSGTVQKYCLRKHIEPVRNCRGLGKRDMVLNDALPVITVDPETYVVTADGVSLVSPPSKELALAQRYFLF 786
                  6899**************************************************666655..99*************989**************************************************************************************************************************************************************************************************************************************************************************************************************************776655554567**************************************************************************************************************************************************************************98 PP

>> TIGR00192  urease_beta: urease, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.0   4.2e-40   2.9e-37       2     102 ..      68     168 ..      67     169 .. 0.98

  Alignments for each domain:
  == domain 1    score: 124.9 bits;  conditional E-value: 4.2e-40
    TIGR00192   2 ipGelllaegditineGrktvevkvkntGdrpiqvGshfhffevnaalkfdrelakGmrldvpsGtavrfepGeeksvelveiaGnreiyGfnglvdgkld 102
                  ipG+   +e +itineGr+++ ++v+n  drpiqvGsh+hf+e+n  l+fdr++a G+rl++ +GtavrfepG+ k v +vei+G++ i+G  ++ +gk+d
  MMETSP1174-20130828|13042_1  68 IPGQTCPKEAQITINEGRDITMLEVTNMADRPIQVGSHYHFIETNPLLRFDRTVAYGKRLNILAGTAVRFEPGDSKMVPMVEIGGQKVIRGGSDICNGKVD 168
                  89*****************************************************************************************9999999987 PP

>> TIGR00193  urease_gam: urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.1e-12   3.5e-09      72     100 ..       2      30 ..       1      32 [. 0.95
   2 ?    1.5   0.1      0.11        75      67      89 ..     311     334 ..     295     341 .. 0.80
   3 ?   -2.3   0.0       1.6   1.1e+03      33      55 ..     562     584 ..     536     602 .. 0.51

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 5.1e-12
    TIGR00193  72 GvaemldevqveatfpdGtklvtvhepir 100
                  Gva++l evqve tfpdGtklvt+h+pi 
  MMETSP1174-20130828|13042_1   2 GVADILGEVQVEGTFPDGTKLVTIHHPIC 30 
                  9**************************95 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
    TIGR00193  67 ddvmeGv.aemldevqveatfpdG 89 
                   dvmeGv + m+  v+ e    +G
  MMETSP1174-20130828|13042_1 311 PDVMEGVtPGMIVGVNTEVLAGEG 334
                  69****956899999999877666 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.6
    TIGR00193  33 peavayisaaileeardGkkvae 55 
                    a+++is+  +   r G+ +a 
  MMETSP1174-20130828|13042_1 562 MGAISIISSDSQAMGRVGEVIAR 584
                  33444445444444444444444 PP

>> TIGR01224  hutI: imidazolonepropionase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.3    0.0067       4.6       6      50 ..     295     349 ..     292     352 .. 0.76
   2 !    6.8   0.0   0.00083      0.57     195     230 ..     436     471 ..     430     489 .. 0.84
   3 !    6.9   0.0   0.00074       0.5     320     352 ..     623     655 ..     616     662 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0067
    TIGR01224   6 ilveegkiaaigqka.......alpge...eaakiidleGklvvPGlvDpHtHlv 50 
                  i ++++k++ ig+          +pg+    +++++  eGk+++ G  D+H H +
  MMETSP1174-20130828|13042_1 295 IGIKGNKVVGIGKAGnpdvmegVTPGMivgVNTEVLAGEGKIITAGAFDAHVHFI 349
                  678888888888876665554423333666799999*****************86 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00083
    TIGR01224 195 sveqsrrilkaaqeaGlavklHaeelkalggaelaa 230
                  +++  + +l+ a+e+ ++v +H++ l++ g++e + 
  MMETSP1174-20130828|13042_1 436 TPSTIQSCLSVAEEHDVQVTIHTDTLNESGCVEQTI 471
                  56778899************************9874 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00074
    TIGR01224 320 laaatvnaAqalglgeekGtleeGkdadlvvls 352
                  la  t+n+A a g+++  G++e Gk adlv+++
  MMETSP1174-20130828|13042_1 623 LAKYTMNPAVAHGMSHLIGSVEVGKFADLVLWD 655
                  6678****************************8 PP

>> TIGR00857  pyrC_multi: dihydroorotase, multifunctional complex type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   2.4e-05     0.016      25     169 ..     325     460 ..     294     487 .. 0.78
   2 ?    1.8   0.0     0.029        20     284     369 ..     563     656 ..     556     661 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
    TIGR00857  25 adaevidakgllvlPgliDlhvhlrdpgeeykEdiesgskaAiaGGvttvadmPNtkPpldtketlekklqrlkkkslvdvllnasvtegnkgkelteaselkeagavgelfiddgseildilllkkaleyaaeagvlivlhaed 169
                   + ev   +g+++  g  D+hvh+    +   E i+sg  + + GG +     PNt   ++t +    +++ + + +  d+ +n+++t + +    + ++ + +agavg   + +     + + ++  l  a+e +v +++h   
  MMETSP1174-20130828|13042_1 325 VNTEVLAGEGKIITAGAFDAHVHFI-CPQIITEAISSGITTLLGGGTG-----PNTGTNATTCTPAPSQMEMMLQ-ATDDMPVNLAFTGKGNSSSPAGLGDIIKAGAVG--LKLHEDWGTTPSTIQSCLSVAEEHDVQVTIHTDT 460
                  67899999*****************.667789******9999888876.....7777776666655555554433.34567777777777777777899999*******..66666666788889999999*********99754 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.029
    TIGR00857 284 gvidiiAsDHapht.leeKlkevaaappGipgletvlplllqllvkg.lis.....lkalvrvlsenParilglkek.gtleegepAdltvidl 369
                  g i ii sD ++   + e +   +++++ + +++ vlp  +++ +++   s     +++ +++ + nPa + g+ +  g +e+g+ Adl++ d+
  MMETSP1174-20130828|13042_1 563 GAISIISSDSQAMGrVGEVIARTWQTASKMKKIRGVLPEDVEANSEAgSTSgdnfrVRRYLAKYTMNPAVAHGMSHLiGSVEVGKFADLVLWDP 656
                  778888888888762457788889999999999999998888888775444221114455566678********975369***********998 PP

>> TIGR02967  guan_deamin: guanine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0099       6.8      34      63 ..     328     358 ..     314     370 .. 0.77
   2 !    8.1   0.0   0.00037      0.25     317     363 ..     611     657 ..     581     672 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0099
    TIGR02967  34 evedlrkkliipGliDtHvHypQlevia.sl 63 
                  ev   ++k+i++G  D HvH+   ++i+ ++
  MMETSP1174-20130828|13042_1 328 EVLAGEGKIITAGAFDAHVHFICPQIITeAI 358
                  55666789************96666555444 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00037
    TIGR02967 317 qlqgkrlsaveafylaTlggakaldlddkiGnlevgkeaDlvvldla 363
                   ++g++  + + +   T++ a a ++ + iG++evgk aDlv+ d+a
  MMETSP1174-20130828|13042_1 611 STSGDNFRVRRYLAKYTMNPAVAHGMSHLIGSVEVGKFADLVLWDPA 657
                  4447777888888888***************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 1886.24
//
Query:       MMETSP1174-20130828|13048_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1174-20130828|13051_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|13047_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.1   0.7      1e-12   45.2   0.1    2.1  2  TIGR00717 rpsA: ribosomal protein S1
    1.2e-13   48.3   4.2    4.2e-07   26.6   0.0    2.8  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    4.4e-07   26.5   1.1    0.00033   17.0   0.0    2.3  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    0.00025   17.3   6.2      0.038   10.1   0.1    3.0  3  TIGR02063 RNase_R: ribonuclease R
     0.0026   14.6   2.1        0.9    6.2   0.0    2.9  3  TIGR00757 RNaseEG: ribonuclease, Rne/Rng family


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   1.2e-15     1e-12     224     342 ..      99     215 ..      93     229 .. 0.59
   2 !   37.6   0.0   2.6e-13   2.1e-10     178     254 ..     229     307 ..     223     319 .] 0.87

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.2e-15
    TIGR00717 224 vkhPseivevgdevkvkvikvDkekkrislslkqlkedPWeeiekkfkvgkkikgkvtnladyGvfveieegiEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslsl 342
                  +k+ + ++++++e+ v   + +k + r +  + ++++dP + + +k+++++ + g+vt++  yGv v+++   +G++hv +++ ++ +++P ++v+ G+++ v v  +d+e + + lsl
  MMETSP1174-20130828|13047_1  99 IKKRRRLIDLNQEMLVEKRQNEKTRLRGNSRIEKFEKDPSKRL-DKLRQNEWLPGQVTRIVSYGVWVDVAAQTDGFLHVRDMA-NGFTHHPADIVSPGEQLSVRVKFVDPEDKSLGLSL 215
                  4444556666666666666666666666666666666665544.456666666666666666666666666666666666665.44555666666666666666666666666666665 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 2.6e-13
    TIGR00717 178 reelleklkegeevkGvVknitdfgafvdlgg.vdgllhitdlswkrv.khPseivevgdevkvkvikvDkekkrisls 254
                  +  ++e ++e++ev G++++ t fgaf+d+g+ vdg+lh+td   ++  ++ +e+ +vgd++++ v+++D+e +r++l+
  MMETSP1174-20130828|13047_1 229 KSLMVEDMEEDQEVWGIIRKTTFFGAFIDVGAeVDGFLHVTDDPRREFgENAQEVFKVGDRMRLYVKEIDREYNRLKLT 307
                  67799*************************966********98776643899***********************9986 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.8      0.21   1.7e+02     214     257 ..      77     119 ..      19     142 .. 0.44
   2 !   26.6   0.0   5.1e-10   4.2e-07     616     681 ..     144     209 ..     127     215 .. 0.91
   3 !   21.4   0.0     2e-08   1.6e-05     612     685 ..     232     307 ..     226     310 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.21
    TIGR03591 214 akevgkekleveakeedeelkkkveelaeekelkealkieekqe 257
                  +ke + ++++ +a+++d++l++k++++ +  +l++ + +e++q+
  MMETSP1174-20130828|13047_1  77 TKE-AIANRKAAAERKDRRLSEKIKKRRRLIDLNQEMLVEKRQN 119
                  111.1111111111222222222222222222222222222222 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 5.1e-10
    TIGR03591 616 vevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidkkgr 681
                   + ++   g+v++i+++g++v++  ++dg++h+ ++a+   ++  d+++ g++++v+v  +d +++
  MMETSP1174-20130828|13047_1 144 LRQNEWLPGQVTRIVSYGVWVDVAAQTDGFLHVRDMANGFTHHPADIVSPGEQLSVRVKFVDPEDK 209
                  56788889***************************************************9998776 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 2e-08
    TIGR03591 612 itaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeerv.ekvedvlkegdevkvkvleidk.kgrvkls 685
                  +++++e ++   g + k++ fgaf+++  + dg++h+ +  +++  e+ ++v+k+gd+++  v eid+  +r+kl+
  MMETSP1174-20130828|13047_1 232 MVEDMEEDQEVWGIIRKTTFFGAFIDVGAEVDGFLHVTDDPRREFgENAQEVFKVGDRMRLYVKEIDReYNRLKLT 307
                  578899999999*************************9876665538999*****************845777776 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.4      0.92   7.6e+02     272     327 ..      44     100 ..      31     115 .. 0.56
   2 !    8.3   0.0   0.00018      0.15     654     715 ..     152     209 ..     144     217 .. 0.85
   3 !   17.0   0.0   4.1e-07   0.00033     652     712 ..     242     299 ..     234     310 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.92
    TIGR02696 272 avkdelekvltiadkqereeaedelkekvkekl.aeeleerekelsaaykavlkklv 327
                  a++d le+    ad+ + e+++d + +k + ++ +e++++r+++ +   + ++ k+ 
  MMETSP1174-20130828|13047_1  44 AISDRLESSAGDADDFQFEDEDDFIIKKKSRRMtKEAIANRKAAAERKDRRLSEKIK 100
                  555666666666666666666665544444444034444555555444555555544 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00018
    TIGR02696 654 gtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadiddrgk 715
                  g v + +++g +v +    dg+lh+   r++a+g   ++  d++s ge++ v ++ +d   k
  MMETSP1174-20130828|13047_1 152 GQVTRIVSYGVWVDVAAQTDGFLHV---RDMANGFT-HHPADIVSPGEQLSVRVKFVDPEDK 209
                  889999******************7...59999975.56789************99997655 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 4.1e-07
    TIGR02696 652 flgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadidd 712
                    g + ktt fgaf+ +    dg+lh+++  + + g   e+ ++v +vg+++++ +++id 
  MMETSP1174-20130828|13047_1 242 VWGIIRKTTFFGAFIDVGAEVDGFLHVTDDPRREFG---ENAQEVFKVGDRMRLYVKEIDR 299
                  568999*********************955444444...7899****************94 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.6      0.25   2.1e+02      11      63 ..      68     125 ..      62     139 .. 0.59
   2 !    9.1   0.0   9.3e-05     0.076     633     672 ..     151     188 ..     144     216 .. 0.83
   3 !   10.1   0.1   4.7e-05     0.038     633     708 ..     243     307 ..     231     310 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.25
    TIGR02063  11 lkkkkekplslkelakelelkkaeekk.....alkkllreLekeglvkknrkkklaka 63 
                  + kkk+++++++++a++   +++++++     + +++l +L++e lv+k++++k +  
  MMETSP1174-20130828|13047_1  68 IIKKKSRRMTKEAIANRKAAAERKDRRlsekiKKRRRLIDLNQEMLVEKRQNEKTRLR 125
                  4455666777777766555444443331111133556778888888777776666554 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 9.3e-05
    TIGR02063 633 egvissvtsfGlFveLeentieGLvhissLkddyyefdek 672
                   g+++ ++s+G++v ++  + +G  h++++ +  + ++++
  MMETSP1174-20130828|13047_1 151 PGQVTRIVSYGVWVDVAA-QTDGFLHVRDMANG-FTHHPA 188
                  699***************.9**********965.555554 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 4.7e-05
    TIGR02063 633 egvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfe 708
                   g+i + t fG F+ +   +++G  h+++             +  Ge+ ++vf++Gd+++  v e+d+e ++++++
  MMETSP1174-20130828|13047_1 243 WGIIRKTTFFGAFIDVGA-EVDGFLHVTDD----------PRREFGENAQEVFKVGDRMRLYVKEIDREYNRLKLT 307
                  699999**********99.9******9852..........344469**********************99998876 PP

>> TIGR00757  RNaseEG: ribonuclease, Rne/Rng family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.6      0.11        91     153     204 ..      63     114 ..      41     121 .. 0.80
   2 !    5.9   0.0    0.0014       1.2      30      73 ..     150     190 ..     136     242 .. 0.77
   3 !    6.2   0.0    0.0011       0.9      43      63 ..     253     273 ..     244     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.11
    TIGR00757 153 ekvglivRtaaegaseeelkkdleklkkkWekikekakkasapllieeeddi 204
                  ++  +i++ +++  ++e++++  +  ++k +++ ek kk+++ + +++e  +
  MMETSP1174-20130828|13047_1  63 DEDDFIIKKKSRRMTKEAIANRKAAAERKDRRLSEKIKKRRRLIDLNQEMLV 114
                  4457899999999999999999999999999999999998888888777655 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0014
    TIGR00757  30 ykgkvtrvlpslqaaFvdigeekegflhlsdilknseklepaea 73 
                  + g+vtr++    +++vd+ ++ +gflh+ d+++  ++ +pa++
  MMETSP1174-20130828|13047_1 150 LPGQVTRIVS--YGVWVDVAAQTDGFLHVRDMANG-FTHHPADI 190
                  5688999987..59*****************9955.44555544 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0011
    TIGR00757  43 aaFvdigeekegflhlsdilk 63 
                  +aF+d+g+e +gflh+ d  +
  MMETSP1174-20130828|13047_1 253 GAFIDVGAEVDGFLHVTDDPR 273
                  79**************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 794.42
//
Query:       MMETSP1174-20130828|13052_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 581.58
//
Query:       MMETSP1174-20130828|13055_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 201.46
//
Query:       MMETSP1174-20130828|13057_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1174-20130828|13054_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1334.56
//
Query:       MMETSP1174-20130828|13058_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1234.10
//
Query:       MMETSP1174-20130828|13062_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.4e-111  369.5   0.0   1.2e-110  369.2   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
      5e-60  198.2   0.1      1e-29  100.7   0.0    2.3  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.4e-31  104.9   0.1    1.3e-14   52.1   0.0    3.1  3  TIGR01068 thioredoxin: thioredoxin
    1.5e-08   32.5   0.1    0.00019   19.1   0.0    2.3  2  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
    2.4e-07   27.5   0.0    0.00097   15.7   0.0    2.2  2  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    5.8e-07   27.2   0.0    0.00015   19.3   0.0    3.0  3  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
      9e-06   23.2   0.2     0.0042   14.5   0.0    2.3  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0024   16.2   0.1        2.4    6.6   0.0    2.9  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
       0.03   12.6   0.2        4.5    5.6   0.0    2.7  2  TIGR02200 GlrX_actino: glutaredoxin-like protein
      0.036   11.3   0.0       0.69    7.2   0.0    2.3  2  TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.2   0.0  2.9e-113  1.2e-110       2     455 ..      24     488 ..      23     495 .. 0.90

  Alignments for each domain:
  == domain 1    score: 369.2 bits;  conditional E-value: 2.9e-113
    TIGR01130   2 evleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifr..nge.sssdYnG.pReaegivkylkkqsgPaskeletvedlekllek.kevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkee..ekeekveeeletdvealekfvkkeslplvgeftketaakifesk.....plkvlllnveeskkkseellekflevakkfkgkkvkfavadeee..fgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgklkpvlkSe.pipeddeepVkvvVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpe.fevegFPTilfvpagkksepvkyegdRtledlvkFikknatie 455
                  +v++lt+ nfd+ i e +l +veFYAPWCGHCk+L PeYe AA +l++++p++ l kvDate+  ++++++v+GyPtL i +  ng  + sdY G  R+a+ ivky+++q+gPa kel++ +++++++ +  +v+v++ f+++d+   + f++v+e+lrd++ +   + d+     ++ +  ++   ++k+    ek + +e+e+++  + l+++v+k+ lplv+++++e ++++ ++       l+vl+  +++skk++++  ++++++a +    +++f + ++++  ++ ++e +gl ++++ ++  +s e+  ky ++   f+ +a  +++++f +g+lkp+l+Se ++p+d++e V +vV+  fd+ivldetKdVL+efYApWC HC+++ap+Ye+la+ +++++ +v+akl+  +Nd+p+  +ve +PTi fvpag+   + +yeg+ +  +l +F++k+a  +
  MMETSP1174-20130828|13062_1  24 AVITLTDGNFDENIIEWPLSVVEFYAPWCGHCKKLTPEYETAAVILQEDDPPIILSKVDATENPVVTSRFNVTGYPTLIIVKpqNGVaQWSDYLGsSRSAADIVKYVRSQVGPACKELKSSQEVTAFVGSaGKVSVLASFSSADDLRLAFFKAVSEELRDQVPFGCVQVDDVSGGAVGVTMYRSFPNEPKE-LffEKIDELEGEQAF-MDGLKEWVEKNRLPLVSTMSQE-DSTYASDVlsigeALAVLFIDDRASKKATKSAAKQLRQIAIAAGIPNMRFGYGKRSSrvMSIVAEGVGLGENNFAIIQGYSPESWIKYVMPV-SFDVDAAVAYLRAFEAGELKPFLRSEaELPQDEDEMVRTVVATSFDKIVLDETKDVLIEFYAPWCQHCQQFAPVYEQLASAFENTNTLVVAKLNEANNDLPDqWKVEHYPTIRFVPAGNG-PITTYEGSLDGLELAEFVRKHAVNS 488
                  79*******************************************************************************833555899*****55********************************999*******************************8888777666666666654443333333.258999999999999.789****************998.4444443222245788899999999988***********999977799999877654226788999************************85.99***********************9579*******************************************************99****************9****************9.7999*****************9865 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   2.5e-32     1e-29       1     104 [.      28     133 ..      28     134 .. 0.92
   2 !   95.3   0.0   1.3e-30   5.1e-28       2     104 ..     384     484 ..     383     485 .. 0.94

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 2.5e-32
    TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgk..kepvdyeG.eReaeelvefveek 104
                  l++ nfde ++ e    +vefyaPWCGhCkkl+Peye +a  l++++  + ++kvdat++ +++s+f+v+g+Ptl ++k ++  ++ +dy G +R+a+++v++v+++
  MMETSP1174-20130828|13062_1  28 LTDGNFDENII-EWPLSVVEFYAPWCGHCKKLTPEYETAAVILQEDDPPIILSKVDATENPVVTSRFNVTGYPTLIIVKPQNgvAQWSDYLGsSRSAADIVKYVRSQ 133
                  6789*******.89999************************************************************986551156899*9978**********987 PP

  == domain 2    score: 95.3 bits;  conditional E-value: 1.3e-30
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                  va +fd++vlde+kdvl+efyaPWC hC+++aP+ye+la+++++++ ++++ak++ +a+++l +++kv+ +Pt++f+++g+   ++yeG+ +  el+efv+++
  MMETSP1174-20130828|13062_1 384 VATSFDKIVLDETKDVLIEFYAPWCQHCQQFAPVYEQLASAFENTN-TLVVAKLN-EANNDLPDQWKVEHYPTIRFVPAGNGPITTYEGSLDGLELAEFVRKH 484
                  6789***************************************876.7******8.56778889******************99****************997 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   3.3e-16   1.3e-13       2      82 ..      29     111 ..      28     129 .. 0.87
   2 ?   -0.4   0.0      0.67   2.8e+02      36      61 ..     174     199 ..     171     239 .. 0.83
   3 !   52.1   0.0   3.1e-17   1.3e-14       4     100 ..     386     484 ..     383     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 3.3e-16
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleela...keleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                  ++ nf+e + +   l +v+f+A+WCg Ck l+P  e +a   +e    + + K++  e++ ++++++++  Ptl+++k  + v+
  MMETSP1174-20130828|13062_1  29 TDGNFDENIIEWP-LSVVEFYAPWCGHCKKLTPEYETAAvilQEDDPPIILSKVDATENPVVTSRFNVTGYPTLIIVKPQNGVA 111
                  6779999999986.889*******************98733356666799***************************9877665 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.67
    TIGR01068  36 leelakeleekvkvvKlnvdeeqeia 61 
                  ++ +++el+++v +  ++vd+ +  a
  MMETSP1174-20130828|13062_1 174 FKAVSEELRDQVPFGCVQVDDVSGGA 199
                  678999*************9987655 PP

  == domain 3    score: 52.1 bits;  conditional E-value: 3.1e-17
    TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelak..eleekvkvvKlnvdeeqeiaakygirsiPtlllfkngk.evkrvvGakpkaalkeliekl 100
                  ++f+++v ++ k vl++f+A+WC  C+ +aPv e+la+  e ++++ v+Kln +++++++ +++++  Pt+ ++  g+  +++  G ++  +l+e+++k+
  MMETSP1174-20130828|13062_1 386 TSFDKIVLDETKDVLIEFYAPWCQHCQQFAPVYEQLASafENTNTLVVAKLN-EANNDLPDQWKVEHYPTIRFVPAGNgPITTYEGSLDGLELAEFVRKH 484
                  6899********************************9823445678899999.7899*****************99973567778888888888887765 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013     0.055     135     202 ..      41     109 ..      31     123 .. 0.70
   2 !   19.1   0.0   4.6e-07   0.00019      32     109 ..     406     482 ..     375     492 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
    TIGR02187 135 evkievfvtptCpYCPrAv....llAhklAleadkilgevieAlEfqdlaekyqvssvPkivinkdveefvG 202
                  ++++  f  p C+ C +      + A  l    + i+   ++A+E++ ++ +++v++ P+++i k ++   G
  MMETSP1174-20130828|13062_1  41 PLSVVEFYAPWCGHCKKLTpeyeTAAVILQEDDPPIILSKVDATENPVVTSRFNVTGYPTLIIVKPQN---G 109
                  56666677888998865441110333333334447888889********************9987665...4 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 4.6e-07
    TIGR02187  32 ekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeegskdieirytGiPaGeEfaalie 109
                    C+ C++   + e+l+++ +  +  ++   +e + +  +++kve++Pt+ +  +g +     y G   G E+a ++ 
  MMETSP1174-20130828|13062_1 406 PWCQHCQQFAPVYEQLASAFENTNTLVVAKLNEANNDLPDQWKVEHYPTIRFVPAG-NGPITTYEGSLDGLELAEFVR 482
                  46*****************999999999999999********************99.555668*********999986 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00016     0.064     376     439 ..      44     108 ..      32     131 .. 0.84
   2 !   15.7   0.0   2.4e-06   0.00097     370     438 ..     395     460 ..     376     480 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00016
    TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf.pkr 439
                  +v +yapwc  c+ +   y   a  l  +   +   + d  ++      ++++ +pt+++  p++
  MMETSP1174-20130828|13062_1  44 VVEFYAPWCGHCKKLTPEYETAAVILQEDDPPIILSKVDATENPVVTSRFNVTGYPTLIIVkPQN 108
                  5779*****************99999999999999999999999999999999999976541554 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.4e-06
    TIGR00424 370 erkeawlvvlyapwcpfcqameasyvelaeklagsg.vkvakfradgdqkefakqelqlgsfptillfpk 438
                  e k+  l+ +yapwc+ cq +   y +la+ +  +    vak++    ++++  ++ +++ +pti + p 
  MMETSP1174-20130828|13062_1 395 ETKD-VLIEFYAPWCQHCQQFAPVYEQLASAFENTNtLVVAKLNEA--NNDLP-DQWKVEHYPTIRFVPA 460
                  4444.57889*******************99876551556776532..23333.3456777788777775 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.022       8.9      52      71 ..      42      61 ..      15      70 .. 0.81
   2 !   19.3   0.0   3.6e-07   0.00015      52      80 ..     398     426 ..     349     445 .. 0.75
   3 ?   -0.7   0.0      0.53   2.2e+02      81     106 ..     465     492 ..     460     500 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.022
    TIGR02738 52 yklvlfyqstCpyChqfapv 71
                   +v fy   C +C++  p 
  MMETSP1174-20130828|13062_1 42 LSVVEFYAPWCGHCKKLTPE 61
                 56899***********9996 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.6e-07
    TIGR02738  52 yklvlfyqstCpyChqfapvLkqlsqqtg 80 
                    l+ fy   C++C+qfapv  ql++ ++
  MMETSP1174-20130828|13062_1 398 DVLIEFYAPWCQHCQQFAPVYEQLASAFE 426
                  345669******************98775 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.53
    TIGR02738  81 levlayslDgkglaeF..pdalpvtpev 106
                  ++++  slDg  laeF   +a++  pe 
  MMETSP1174-20130828|13062_1 465 ITTYEGSLDGLELAEFvrKHAVNSIPET 492
                  567788**********333455555554 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0032       1.3      64      80 ..      41      57 ..       9      69 .. 0.81
   2 !   14.5   0.0     1e-05    0.0042      56      90 ..     389     423 ..     358     437 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0032
    TIGR00385 64 klvLlnvwasWCptCra 80
                  l ++ ++a WC+ C++
  MMETSP1174-20130828|13062_1 41 PLSVVEFYAPWCGHCKK 57
                 57789**********97 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1e-05
    TIGR00385  56 taevlkkgklvLlnvwasWCptCraehplLkelak 90 
                  ++ vl ++k vL+ ++a WC+ C++  p+ ++la 
  MMETSP1174-20130828|13062_1 389 DKIVLDETKDVLIEFYAPWCQHCQQFAPVYEQLAS 423
                  3345678899*********************9996 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0068       2.8       4      31 ..      47      73 ..      44     108 .. 0.64
   2 !    6.6   0.0    0.0059       2.4       7      45 ..     405     446 ..     400     462 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0068
    TIGR02196  4 vYttpwCppCkkakeyLkskgiafeeid 31
                  Y  pwC++Ckk+    +++ +  +e d
  MMETSP1174-20130828|13062_1 47 FY-APWCGHCKKLTPEYETAAVILQEDD 73
                 44.69*******9888777777666654 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0059
    TIGR02196   7 tpwCppCkkakeyLkskgiafeeid...vekdsaaaeellkk 45 
                   pwC++C++     ++   afe+ +   v+k ++a ++l  +
  MMETSP1174-20130828|13062_1 405 APWCQHCQQFAPVYEQLASAFENTNtlvVAKLNEANNDLPDQ 446
                  59*******************998755566666666666555 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011       4.5       6      17 ..      48      59 ..      44      69 .. 0.80
   2 ?    4.0   0.0     0.036        15       6      30 ..     404     428 ..     400     439 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.011
    TIGR02200  6 atswCgyCaslk 17
                  ++wCg C++l 
  MMETSP1174-20130828|13062_1 48 YAPWCGHCKKLT 59
                 579******996 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.036
    TIGR02200   6 atswCgyCaslkrtLdkdgaeYevv 30 
                   ++wC  C++   + ++   ++e  
  MMETSP1174-20130828|13062_1 404 YAPWCQHCQQFAPVYEQLASAFENT 428
                  579*******998888877777765 PP

>> TIGR02661  MauD: methylamine dehydrogenase accessory protein MauD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.091        37      77     102 ..      43      68 ..      20      90 .. 0.82
   2 ?    7.2   0.0    0.0017      0.69      74     111 ..     396     434 ..     368     453 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.091
    TIGR02661  77 tllmftapscpvcdkllpiiksiara 102
                  +++ f ap c  c+kl p   + a +
  MMETSP1174-20130828|13062_1  43 SVVEFYAPWCGHCKKLTPEYETAAVI 68 
                  567899**********9987766654 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0017
    TIGR02661  74 grptllmftapscpvcdkllpiiksiara.eeidvvlis 111
                   ++ l+ f ap c  c+++ p+   +a a e+++ ++++
  MMETSP1174-20130828|13062_1 396 TKDVLIEFYAPWCQHCQQFAPVYEQLASAfENTNTLVVA 434
                  5678999****************9998653778777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1502.88
//
Query:       MMETSP1174-20130828|13063_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-10   36.4   0.1    1.1e-09   35.9   0.1    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-07   29.1   0.0    1.7e-07   28.7   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      3e-07   26.9   0.2      4e-07   26.5   0.1    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.2e-07   26.8   0.0    9.1e-07   26.0   0.0    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.4e-07   26.8   0.0    1.1e-06   26.3   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.2e-06   26.0   0.0      2e-06   25.2   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-06   25.4   0.0    2.5e-06   24.9   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.8e-06   24.7   0.7      3e-06   24.0   0.5    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.1e-06   24.5   0.1    4.2e-06   24.0   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      8e-06   23.3   0.0    1.1e-05   22.8   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    8.4e-06   23.2   0.0    1.3e-05   22.6   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.5e-06   22.8   0.2    1.1e-05   22.4   0.1    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
    9.2e-06   23.2   0.0    1.4e-05   22.6   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.4e-05   22.2   0.0    2.3e-05   21.6   0.0    1.3  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.9e-05   21.9   0.2    3.2e-05   21.2   0.1    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      2e-05   22.2   0.0    2.8e-05   21.7   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.2e-05   22.0   0.1    3.5e-05   21.4   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      3e-05   21.0   0.0    3.9e-05   20.6   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      4e-05   20.6   0.1      4e-05   20.6   0.1    1.6  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    0.00011   19.9   0.1    0.00016   19.3   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    0.00013   19.1   0.1     0.0002   18.6   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    0.00014   18.3   0.0    0.00018   18.0   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    0.00015   19.2   0.0    0.00023   18.6   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    0.00025   18.4   0.0    0.00036   17.8   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    0.00037   17.9   0.0    0.00053   17.4   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    0.00053   17.4   0.0    0.00079   16.8   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    0.00059   17.5   0.0     0.0008   17.0   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
     0.0023   15.2   0.0     0.0044   14.3   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0034   13.9   0.1     0.0045   13.5   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      0.006   12.7   0.0     0.0077   12.4   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
     0.0076   12.6   0.0     0.0098   12.3   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
  ------ inclusion threshold ------
       0.01   12.1   0.1      0.014   11.7   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      0.011   11.8   0.0      0.013   11.5   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
      0.017   11.5   0.0      0.023   11.1   0.0    1.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      0.017   12.6   0.0      0.026   12.0   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      0.019   10.1   0.0      0.024    9.8   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      0.025   11.8   0.0      0.039   11.1   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      0.034   10.4   0.1      0.044   10.1   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      0.035   10.4   0.0      0.045   10.1   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      0.036   11.0   0.1      0.052   10.5   0.1    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
        1.4    6.7  10.2        4.8    5.0   0.1    2.2  2  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.1e-11   1.1e-09     132     219 ..       3      91 ..       1     103 [. 0.85

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.1e-11
    TIGR03864 132 eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaael 219
                  +L+ G++ rv +   ll   +++LlDe t+ LD+++r++l++ +re + + g ++L++th+++ +++   +++ l + k ++  a+++l
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWpTHVLHLSRSKTAKLHAMNQL 91 
                  79**************************************************************9985144555666666655555555 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.7e-09   1.7e-07     124     213 ..       3      93 ..       1     158 [. 0.88

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.7e-09
    TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213
                  ++s G++ r+ l + l+   +++ LDE t  LD r+r+ + d+i+e   + g+t+l +th +e +d    +v  +++ k ++  ++++L +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMAlGTTLLYSTHVFEGIDPWPTHVLHLSRSKTAKLHAMNQLSH 93 
                  679******************************************999988***************9999999999999998888888876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1     4e-09     4e-07     603     660 ..       3      62 ..       1      67 [. 0.93

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4e-09
    TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtH 660
                  +LS GQ+  v l   ll   +i+lLDE t++lD ++ e+ll+ ++e +   ++Tl+ +tH
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMalGTTLLYSTH 62 
                  7*******************************************9755547********* PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   9.1e-09   9.1e-07     457     515 ..       2      62 ..       1      74 [. 0.89

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 9.1e-09
    TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealre..laegrtvllvaH 515
                  ++LS Gq+ R+ L   ll +++++llDE ta+LD ++ +++l+ +re  +a g t+l  +H
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdsMALGTTLLYSTH 62 
                  58*******************************************9733568888888888 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.1e-08   1.1e-06     128     208 ..       3      83 ..       1      88 [. 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.1e-08
    TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  +ls Gq+ rv l   l+ +k i+llde  + ld + re +l ++++ +     tll  th  + +    ++v+ ++  k +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSKTA 83 
                  79**********************************************************999888888888877776665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     2e-08     2e-06     134     192 ..       3      62 ..       1      68 [. 0.91

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2e-08
    TIGR03608 134 elsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtH 192
                  +ls G+k Rv l   ll + +++l DE t+ LD + re +l++++e     g+t++  tH
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdSMALGTTLLYSTH 62 
                  79****************************************998714567999999999 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.5e-08   2.5e-06     126     186 ..       2      63 ..       1      67 [. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.5e-08
    TIGR01166 126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrk.lreeGktvvisthd 186
                  ++ls G+k rv +   +    +++llde ta+ld + +e+ll+ +r+   + G+t++ sth 
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdSMALGTTLLYSTHV 63 
                  579**********99999999***********************98725688*********5 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.5     3e-08     3e-06     471     524 ..       3      58 ..       1      63 [. 0.83

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3e-08
    TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaee.grtvv 524
                   lS G++ R++l   Ll + +++lLDE t++LD  ++e+ll+ ++ + ++ g+t +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIReDSMAlGTTLL 58 
                  79****************************************99964444134444 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   4.2e-08   4.2e-06     130     226 ..       2      98 ..       1     118 [. 0.90

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.2e-08
    TIGR02142 130 gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls 226
                  +kLs G k Rv +   lL   +++l+De  a LD + ++ +l ++++ s  l   +ly  H ++ +     +v+ l   + +   +++++  +++ +
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSKTAKLHAMNQLSHQSSCP 98 
                  58**************************************************************************999999999998888877655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-07   1.1e-05     129     226 ..       2      99 ..       1     108 [. 0.90

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-07
    TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepataf 226
                  s+ls Gq+ rv l   l    +++llde  + ld + r+ l  ++r+    +  t ++ th  e       ++  l++ k  ++ + ++++++ + ++
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSKTAKLHAMNQLSHQSSCPL 99 
                  68***************99999***************************************9999999999999999999999999999988776655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-07   1.3e-05     144     223 ..       2      81 ..       1      96 [. 0.92

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.3e-07
    TIGR02315 144 dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkage 223
                  ++Ls Gq+ Rv +   l++  +++l DE +a LD ++ ++++d +++ +   g t + + H  +    + ++++ l  ++
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSK 81 
                  68************************************************************999999999999888776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.1e-07   1.1e-05     134     199 ..       2      68 ..       1     105 [. 0.88

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.1e-07
    TIGR01288 134 adlsggmkrrltlaralindpqllildepttgldpharhliwerlrs.llargktilltthlmeeae 199
                  ++ls g k r+ l   l+   ++++lde t+ ld  ar  + + +r   +a+g t+l +th++e  +
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdSMALGTTLLYSTHVFEGID 68 
                  689************************************99999996379************99876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.4e-07   1.4e-05     141     200 ..       3      62 ..       1      78 [. 0.96

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.4e-07
    TIGR02982 141 dlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                  +ls Gqk rv +   l    ++vl de ta ld ++ + +++ +++ +   gtt+l  th
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTH 62 
                  79*******************************************************999 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.3e-07   2.3e-05     145     224 ..       2      81 ..       1      96 [. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.3e-07
    TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGk 224
                  ++ls Gqk rv +   l    +++l+devt+ ld +  e +l+ +r+ +     t+l  th +         vl + + k
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSK 81 
                  689***********99988889***************************************8877666666666666665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   3.2e-07   3.2e-05     133     194 ..       2      63 ..       1      67 [. 0.95

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.2e-07
    TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                  ++ls Gq+ rv L   l +   ++LLDe  + LD + re+L   +++    lg t +  th 
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHV 63 
                  689****************************************************9999995 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.8e-07   2.8e-05     137     212 ..       3      79 ..       1      81 [. 0.91

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.8e-07
    TIGR02673 137 elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllke.lnkrGttvivathdeelvervkkrvlelek 212
                  +ls G + Rv +   ++   +++l De t  lD +  er+ld ++e   + Gtt++ +th  e ++   ++vl+l++
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdSMALGTTLLYSTHVFEGIDPWPTHVLHLSR 79 
                  79****************************************997626789*********99999999888888876 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.5e-07   3.5e-05     127     187 ..       3      64 ..       1      77 [. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.5e-07
    TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll.athqd 187
                  +Ls Gqk R+ l   ll  +++ +LDE t+ lD ++ e+l + +++     G++ll +th  
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLySTHVF 64 
                  79**********99999*******************99999999988777776655267765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.9e-07   3.9e-05     139     206 ..       2      69 ..       1     102 [. 0.89

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.9e-07
    TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkr 206
                  s ls gqk rv +   l    +++l de t+ ld  + + +l++++e    lg t+l  th ++ +  
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDP 69 
                  78****************9999***************************************9887765 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     4e-07     4e-05      99     159 ..       2      62 ..       1      67 [. 0.96

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4e-07
    TIGR01187  99 sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvth 159
                  s+ls Gq+ rv l   +    +i+LlDe  + LD + r+++   +++    lG t+++ th
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTH 62 
                  689****************99**************************************** PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-06   0.00016     113     172 ..       3      63 ..       1      87 [. 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-06
    TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage.gtailmtthd 172
                  +ls Gq+ rv++   l    +++llde  + ldl ++e+l+++++e + + gt++l +th 
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMAlGTTLLYSTHV 63 
                  79***********9999999***********************99877554999999**95 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     2e-06    0.0002     136     211 ..       2      78 ..       1      98 [. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2e-06
    TIGR03873 136 stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvld 211
                  s ls G++ rv l   l    +++llde t  ld++a+  ll ++re + a g+t + + h ++       hv+ l+
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSmALGTTLLYSTHVFEGIDPWPTHVLHLS 78 
                  579**************9999*************************9763667777778777666666666665555 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-06   0.00018     610     652 ..       2      44 ..       1      66 [. 0.88

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-06
    TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkive 652
                  s++s+Gqk r+ l   ll + ++++lde+t++ldl   +++++
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLD 44 
                  689*******************************998888775 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.3e-06   0.00023     140     202 ..       2      64 ..       1      82 [. 0.93

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.3e-06
    TIGR02211 140 selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdl 202
                  s+ls G++ rv +   l+   ++vl de t++ld ++ ++++++++e   +++t+ll  th  
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVF 64 
                  89**********************************************************965 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-06   0.00036     125     186 ..       3      64 ..       1      95 [. 0.92

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.6e-06
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDl 186
                  +ls G   Rvm+ + ll    +++ De t++lD+ ++ ++L+ ++e     g+++l+ th +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVF 64 
                  6999******************************************************9965 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.3e-06   0.00053     132     224 ..       2      96 ..       1     119 [. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 5.3e-06
    TIGR03522 132 galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevik..eiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                  ++ls G + rv l   ll   ++++lde t+ ld      + + i+  ++a   t+++sth+   ++    +v+ + + k    +++++l+++ +
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIRedSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSKTAKLHAMNQLSHQSS 96 
                  689*******************************98777777777622588899********************999999988888888877665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.9e-06   0.00079     150     228 ..       3      81 ..       1     111 [. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 7.9e-06
    TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                  +ls Gq  r+ +   l    ++++lde  ++ldl  +  +l+ +++   + G++ l+ th ++ ++    +vl l + +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGIDPWPTHVLHLSRSK 81 
                  79**********9999777778889***********************************9888877777777666555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     8e-06    0.0008     138     214 ..       3      80 ..       1      82 [. 0.91

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8e-06
    TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilellee.vnraGttvlvathdenlveskrkrvltlskG 214
                  +ls G++ rv +   ++    ++l de t++ld    + +l++++e    +Gtt+l +th  + ++  + +vl+ls+ 
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdSMALGTTLLYSTHVFEGIDPWPTHVLHLSRS 80 
                  79***********99999999*********************997626678***********************9986 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.4e-05    0.0044     150     203 ..       4      58 ..       1      66 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.4e-05
    TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak.argaali 203
                   s G k Rv +   l+ ++ i+LLde ta Ld   r+  +++i+e   a g++l+
  MMETSP1174-20130828|13063_1   4 LSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSmALGTTLL 58 
                  799****************************************986415577776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.5e-05    0.0045     476     530 ..       3      58 ..       1      65 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-05
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaes.eqlvqqaleelmkgrttlv 530
                  +Ls Gqk r+ +   +l  ++i+LLde t+ Ld ++ e+l+    e  m+  ttl+
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRArERLLDFIREDSMALGTTLL 58 
                  79*******************************87526667777777888888876 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.6e-05    0.0077     593     650 ..       3      62 ..       1      83 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.6e-05
    TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre..ickgrtviiiah 650
                  +ls Gq+ r+ l   l+   ri++lde t+ ld  + + + + +re  ++ g t++  +h
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREdsMALGTTLLYSTH 62 
                  79*******************************999888877665422455666665555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   9.8e-05    0.0098     168     233 ..       3      68 ..       1      92 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.8e-05
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpevie 233
                  +ls G+k rv+l  ql     ++l de t  ld ++ + + + ++e   + + +l+ ++h  e i+
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHVFEGID 68 
                  578888888888888888777888888888888888888888888888888888888888766665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014     0.014     588     625 ..       3      40 ..       1      49 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
    TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQa 625
                  +lS GQ+ R+++   l    ri+l+DE T  LD r+ +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARE 40 
                  79****************99*************88765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013     0.013     616     703 ..       2      94 ..       1     100 [. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqe...sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmek 703
                  s ls+Gqk r+ +   L+   r+++LDe t+ LD  + e+ll     +  a + t+l  +h  + +     ++l l++ +  +l   +qL ++
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLrARERLLDFireDSMALGTTLLYSTHVFEGIDPwPTHVLHLSRSKTAKLHAMNQLSHQ 94 
                  579*******************************95556666653224445566777777777766642456666666666666666666655 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023     0.023     443     486 ..       3      46 ..       1      88 [. 0.57

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
    TIGR03719 443 elsGGernrvhlakllkeggnvllldePtndldvetlraleeal 486
                  +ls G++ rv l   l     ++llde t +ld+ + + l + +
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFI 46 
                  45556666666655555556666666666666555444443333 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00026     0.026     123     188 ..       2      68 ..       1      90 [. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00026
    TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf.pekGitvilsshilseve 188
                  +++s G k r+ + i ll   ++++lde t  ld    + l ++i+      G+t++ s+h++  ++
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDsMALGTTLLYSTHVFEGID 68 
                  57899****************************************8751567**********98776 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00024     0.024    1421    1505 ..       3      90 ..       1      97 [. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00024
    TIGR00957 1421 nlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfed..ctvltiahrlntimdy.trvlvldkgevaefdapse 1505
                   +ls gq+  v l   ll   +i++lde ta +dl + + +   ir +      t+l  +h ++ i  + t vl l + + a++ a  +
  MMETSP1174-20130828|13063_1    3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMAlgTTLLYSTHVFEGIDPWpTHVLHLSRSKTAKLHAMNQ 90  
                   699********************************99999999997644311566667777777765546777777776666666555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039     0.039     144     193 ..       3      52 ..       1      67 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00039
    TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk 193
                  +Ls Gq+ r+ +   l     ++LlDe t+ LD  a e++ ++i+e +  
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMA 52 
                  79**********999988889***********************985544 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00044     0.044     469     523 ..       2      57 ..       1      67 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00044
    TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDnes.eRlvqaaLerlmkgRttl 523
                  skLs Gq+ R+ +   ll    i++LDe t+ LD  + eRl+    e  m   ttl
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRArERLLDFIREDSMALGTTL 57 
                  79********************************7543888777666666666666 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00045     0.045     453     504 ..       2      53 ..       1      67 [. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00045
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkark 504
                  ++Ls+Gq+ R+ L   l    ++v+LDe  a+LD +    l++ + e   + 
  MMETSP1174-20130828|13063_1   2 SKLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMAL 53 
                  57********************************988888877776655554 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00052     0.052     129     189 ..       3      63 ..       1      67 [. 0.94

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00052
    TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  +ls G++ rv l+  l     ++l+de  + ld   r+ l d + +    l  t+++ th 
  MMETSP1174-20130828|13063_1   3 KLSSGQKTRVMLLIQLLPPKRIVLLDEVTAELDLRARERLLDFIREDSMALGTTLLYSTHV 63 
                  79***************999**************************9999****9999995 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.048       4.8      69     101 ..     123     155 ..      79     169 .. 0.81
   2 ?    4.4   3.6      0.07         7      58     127 ..     229     301 ..     202     339 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.048
    TIGR02205  69 heipqpseqkepsiseavdkerkksvedeeasv 101
                  ++ p+p++q++p+  ++v+ ++kk++++ +  +
  MMETSP1174-20130828|13063_1 123 PPPPSPTQQQQPQQQSLVALDKKKKQKKRDELA 155
                  67799************9997777777665544 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.07
    TIGR02205  58 e.veevrverv...eheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepre 127
                  + ++ v++ r    e+ +p  +e+ ep  +e+++  + +++e++e++    pv+ +   p++ +va++ vep  
  MMETSP1174-20130828|13063_1 229 NsSGAVQKTRPmkpEQAEPAKTEKTEPIKTEKTEPFETEKTEPIETEKT-EPVKTKQTEPTKTSVAPERVEPVS 301
                  3345555554444477778888888888888888777777777777776.888888889999999999888854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        41  (0.00999512); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.50
# Mc/sec: 1095.51
//
Query:       MMETSP1174-20130828|13061_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2705.78
//
Query:       MMETSP1174-20130828|13064_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   83.8   0.3    1.2e-11   41.9   0.1    2.8  2  TIGR00487 IF-2: translation initiation factor IF-2
    4.1e-10   36.5   0.1     0.0005   16.4   0.0    3.1  3  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.3e-07   28.8   0.0    2.3e-07   28.0   0.0    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      4e-05   20.3   0.0    6.2e-05   19.7   0.0    1.3  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
     0.0012   16.0   0.0     0.0021   15.2   0.0    1.3  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0022   14.6   0.0     0.0032   14.1   0.0    1.2  1  TIGR00485 EF-Tu: translation elongation factor Tu
  ------ inclusion threshold ------
      0.016   12.7   0.0      0.092   10.2   0.0    2.1  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.034   11.7   0.0      0.061   10.9   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     3e-13   1.5e-10     170     355 ..       2     216 ..       1     226 [. 0.69
   2 !   41.9   0.1   2.3e-14   1.2e-11     375     473 ..     274     368 ..     248     372 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 3e-13
    TIGR00487 170 DGvkpqtieaiehakaanvPiivainkiDkpean.pDrvkqelseyglvpeewGG...etifvpvsalkgkgideLldaiLlqse.veelkanknk...........qakgvvieakldkgrGpvatvlvqeGtLkvGDivvvgaayGkvramidekGksv....keagPsiaveilG.lse........vPaaGdelivvkdekkarlvaekra 355
                  +Gv +qt e+i  a + + P++va+nk D  + +  + v++ l ey ++  +        +   ++ l  + ideL  ai  +se ++ l   +++           +++gv+++ k d+  G    +l+++G +k+GD +v +  + ++r++ +e    v     ea P  av++   +++            G+ ++v+++  +a+ + ++r+
  MMETSP1174-20130828|13064_1   2 EGVCDQTAESIGCAEEIGLPVVVALNKADLVDQDrLEDVTAALREYVILKSAKIEpisALKRWRIAELGRTCIDELELAIKRVSEpIVSLGDKYDGreeedgsssvcKTHGVILDYKRDRQMGKNFHILIRSGSIKLGDFIVSDLIWTRIRSIYEEGNALVcrehGEAHPGRAVRVGCaFKKaddttsirYSPVGEPFTVFENAVDAQALVDARR 216
                  69***************************987763688999*****998765433000223345666677889999878877776555554333321111122222245799*****************************************98865444222257888888888431332111111112346777777777777777666665 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 2.3e-14
    TIGR00487 375 seqikegelkelniilkaDvqGsleaiknslekleveevkvkvihsgvGeitetDislasasnaiiigfnvrldakakkvaeaenvdlrkysviyklid 473
                   + ++e +l+   +++kaD+  sl  i ++le+ +    +v+v+ + vG++  tD+++a  ++a ++ f+v  +  ++++a++e++ +++++ i +l+d
  MMETSP1174-20130828|13064_1 274 AAAAAEAHLEAHLVVVKADTANSLATIMDALEDAT----NVEVVVARVGDVNTTDLTFAGGTGASVLCFQVSYQHGVRSKASEEGIPVHHFKTIQALLD 368
                  5567788888889******************9765....577899**************************************************9997 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00021      0.11     104     145 ..       2      43 ..       1      61 [. 0.87
   2 !    7.9   0.0   0.00038      0.19     230     280 ..     109     155 ..     100     161 .. 0.91
   3 !   16.4   0.0   9.7e-07    0.0005     350     395 ..     283     329 ..     271     371 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00021
    TIGR00491 104 eGfkpqtveavnilrqlktPfvvaankidripGwkskegkfi 145
                  eG+  qt e++    ++  P vva nk d+++  + ++ ++ 
  MMETSP1174-20130828|13064_1   2 EGVCDQTAESIGCAEEIGLPVVVALNKADLVDQDRLEDVTAA 43 
                  99****************************987777666555 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00038
    TIGR00491 230 kakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlvtrvkall 280
                  k++G+il+ k ++ +G    ++i  G +k gd +v     d + tr++++ 
  MMETSP1174-20130828|13064_1 109 KTHGVILDYKRDRQMGKNFHILIRSGSIKLGDFIV----SDLIWTRIRSIY 155
                  689******************************98....588999999885 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 9.7e-07
    TIGR00491 350 ddeGilvkadtlGslealvnelrka.gvkikkaevGdvskkdvveva 395
                  + + ++vkadt  sl ++++ l++a +v++ +a vGdv+  d++ ++
  MMETSP1174-20130828|13064_1 283 EAHLVVVKADTANSLATIMDALEDAtNVEVVVARVGDVNTTDLTFAG 329
                  45569*****************98538**************998665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   4.4e-10   2.3e-07     269     354 ..       2      85 ..       1      90 [. 0.89

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.4e-10
    TIGR03594 269 egiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyeslskris 354
                  eg+ +q ++ +g ++e g ++v+++NK Dlv d+++le+++  l+ ++  lk a+i  iSAl++ ++ +l +++ +  e + kr+s
  MMETSP1174-20130828|13064_1   2 EGVCDQTAESIGCAEEIGLPVVVALNKADLV-DQDRLEDVTAALR-EYVILKSAKIEPISALKRWRIAELGRTCIDELELAIKRVS 85 
                  678889999999*******************.**********998.67799*******************9998887777777776 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-07   6.2e-05      85     157 ..       2      69 ..       1      88 [. 0.84

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.2e-07
    TIGR00475  85 eGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeL 157
                  eGv  qt E +  ++ +g++ ++v+l+KaD vd++++   E  + + l+e+ +lk aki  +sA +   i eL
  MMETSP1174-20130828|13064_1   2 EGVCDQTAESIGCAEEIGLP-VVVALNKADLVDQDRL---E-DVTAALREYVILKSAKIEPISALKRWRIAEL 69 
                  9*******************.9************955...4.46778899999******99999876666666 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.1e-06    0.0021     121     190 ..       6      71 ..       2      90 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.1e-06
    TIGR03680 121 pqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaenapiiPvsalkkvnidvlle 190
                   qt e +   e ig   +v++ nk dlv++++  +    ++e+v   + + a+i P+salk+  i  l +
  MMETSP1174-20130828|13064_1   6 DQTAESIGCAEEIGL-PVVVALNKADLVDQDRLEDVTAALREYV---ILKSAKIEPISALKRWRIAELGR 71 
                  599999999999998.5899************999999999998...55679*********998877654 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.1e-06    0.0032     110     156 ..       2      46 ..       1      62 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.1e-06
    TIGR00485 110 dgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevre 156
                  +g+  qt e i  a ++g+p +vv lnk dlvd++ l + v   +re
  MMETSP1174-20130828|13064_1   2 EGVCDQTAESIGCAEEIGLP-VVVALNKADLVDQDRLED-VTAALRE 46 
                  57889***************.5778*******9998766.4555665 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018     0.092     120     182 ..      10      70 ..       3      74 .. 0.87
   2 ?   -3.1   0.0       2.3   1.2e+03     106     119 ..     210     223 ..     203     227 .. 0.83
   3 ?   -1.3   0.0      0.64   3.3e+02     123     144 ..     275     296 ..     266     315 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
    TIGR03598 120 ellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelk 182
                  e + +++e ++pv+v l+KaD +++ +l++ ++++++ +  ++  +++  +S+lk+  i+el 
  MMETSP1174-20130828|13064_1  10 ESIGCAEEIGLPVVVALNKADLVDQDRLEDVTAALREYVILKS--AKIEPISALKRWRIAELG 70 
                  567889999****************************998884..489*******99999885 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.3
    TIGR03598 106 llvDirhelkelDl 119
                   lvD+r+ l+elD 
  MMETSP1174-20130828|13064_1 210 ALVDARRALHELDD 223
                  699****9999997 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.64
    TIGR03598 123 ellkeakipvlvvltKaDklkk 144
                  + ++ea+++ ++v+ KaD  ++
  MMETSP1174-20130828|13064_1 275 AAAAEAHLEAHLVVVKADTANS 296
                  4567788999999999998765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.061      96     151 ..       3      62 ..       1      71 [. 0.69

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    TIGR00231  96 glekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfa..klnaepiielsaet 151
                  g+ +qt e i  a++ g p+++++nK Dl+d   l+  ++ l++   l+ ++i ++sa +
  MMETSP1174-20130828|13064_1   3 GVCDQTAESIGCAEEIGLPVVVALNKADLVDqdRLEDVTAALREyvILKSAKIEPISALK 62 
                  6668889999999999***************85444444433331135555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 1003.12
//
Query:       MMETSP1174-20130828|13067_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|13066_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1357.01
//
Query:       MMETSP1174-20130828|13068_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 912.45
//
Query:       MMETSP1174-20130828|13073_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 763.06
//
Query:       MMETSP1174-20130828|13074_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 568.29
//
Query:       MMETSP1174-20130828|13070_1  [L=2548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.40u 0.18s 00:00:01.57 Elapsed: 00:00:01.11
# Mc/sec: 3029.80
//
Query:       MMETSP1174-20130828|13078_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-17   58.4   0.0    1.1e-16   58.2   0.0    1.0  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   2.6e-20   1.1e-16     530     650 ..      26     168 ..       3     170 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 2.6e-20
    TIGR00575 530 e....ellkvegvgekvaesvveffskeene.ellkkleelgveles...........askekveaeeks.llagktfvltGtleklsrkeakeklealggkvassVskktdyvvagek......agsKlkkAkelgikilsee 650
                  e     l +v+g+ge   e+++ef +++e++   l+  ++l++e +s           + +++++++ ++   +g+ +v+tG+l++l+r+ea++++ealgg   + V+kkt  +v+ge+      a++K+k+A+elg++il+e 
  MMETSP1174-20130828|13078_1  26 EeahaALCAVPGIGEFALEALIEFAQTPEERsAALDLARHLNLESDSadtidgapdgtT-TTTTTTTGRGgEWEGRVVVFTGKLSRLTRSEAAQRVEALGGTCGNTVTKKTTHLVVGEEddtgtsATRKVKRARELGVSILTEG 168
                  134447999******************99996567777777777777889999999844.444444444459********************************************975444444899*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1174-20130828|13075_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 667.94
//
Query:       MMETSP1174-20130828|13072_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   16.5   0.0       0.18    7.1   0.0    2.3  2  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   5.1e-05      0.21     477     515 ..       2      40 ..       1      53 [. 0.93
   2 !    7.1   0.0   4.4e-05      0.18     639     683 ..     198     246 ..     179     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 5.1e-05
    TIGR01967 477 iGrqlaqlPvdPrlarmlleaerlgclqevliiasalsi 515
                  +G+ +a lPv Pr++++ll +++ + l  ++ ++s ls 
  MMETSP1174-20130828|13072_1   2 LGKAMASLPVGPRFSKLLLLSRQAQVLDRAITLVSLLSE 40 
                  89********************************99986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 4.4e-05
    TIGR01967 639 flifPgselakksPkwvmaaelvetsklyarl....vakiePeWveeva 683
                  ++i+P s+l++ +P +v  +el+     +ar     +++++  W+ e+ 
  MMETSP1174-20130828|13072_1 198 LFIHPKSSLFHTEPDYVAYGELIRSGGTHARAqmvsCTQVDAHWLYELG 246
                  68***********************99999954444789*****98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.50
# Mc/sec: 1707.94
//
Query:       MMETSP1174-20130828|13077_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.7   0.0      0.022   11.1   0.0    1.1  1  TIGR01312 XylB: xylulokinase


Domain annotation for each model (and alignments):
>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-06     0.022     199     251 ..      90     141 ..      83     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.2e-06
    TIGR01312 199 sllPklvessekaGkvreevakklGleegvkvaaGggdnaagAiGlgivkegk 251
                  ++ P++ +++++   +r+ +a++lG+++   va Gg+  a++ iGlg + eg+
  MMETSP1174-20130828|13077_1  90 HMYPAVRDAKASLRWIRA-HAHDLGVNAAALVAYGGSAGACTTIGLGSLLEGD 141
                  567888888888888887.999*************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 900.23
//
Query:       MMETSP1174-20130828|13079_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.27s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1317.14
//
Query:       MMETSP1174-20130828|13083_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.22s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|13088_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.22s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 216.24
//
Query:       MMETSP1174-20130828|13093_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1174-20130828|13094_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 436.30
//
Query:       MMETSP1174-20130828|13092_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.5   0.0       0.04   11.6   0.0    1.4  1  TIGR00327 secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic


Domain annotation for each model (and alignments):
>> TIGR00327  secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.8e-06      0.04       7      35 ..      90     118 ..      87     119 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.8e-06
    TIGR00327   7 kefikeskrvlkvakKPdkeEYlkvaKvt 35 
                   ef+  ++r+++++ KP+k  Y ++a vt
  MMETSP1174-20130828|13092_1  90 HEFVTRYERMIAMMHKPSKTRYYQMAIVT 118
                  59********************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1059.13
//
Query:       MMETSP1174-20130828|13098_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|13100_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 415.22
//
Query:       MMETSP1174-20130828|13101_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|13102_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   13.0   0.1     0.0084   12.8   0.0    1.0  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     2e-06    0.0084     399     474 ..       6      81 ..       3      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-06
    TIGR03417 399 ceadPe..qlydleadPkelenlaeepehaetlealraeaaarwdlealdaevresqarrrvvyealrqGklaswdyq 474
                  c+ d +  ++y++ +dP e ++l  + ++a+  ++l+++  a ++ +++d + r+ q  r++  ea+++  ++  ++ 
  MMETSP1174-20130828|13102_1   6 CDDDTNwyRMYNIIEDPSEVRDLYGNESYASIQAELEEKYCAYYKNSTVDIAYRNPQMTRQY--EAMKDNDMFVTEWD 81 
                  5555542279************************************************9975..55555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|13103_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    8.7  24.5       0.56    8.5   2.4    2.5  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.1    0.0011       4.4      22      44 .]     149     176 ..     138     177 .. 0.72
   2 ?    8.5   2.4   0.00014      0.56      24      44 .]     222     242 ..     203     242 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0011
    TIGR03892  22 a.....ssgatstsssSsCsTcsctsSC 44 
                  +     + g+++tsssSs+s++s tsS+
  MMETSP1174-20130828|13103_1 149 GnggsdGGGCGGTSSSSSSSSSSGTSSS 176
                  3444556689999999999999999886 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00014
    TIGR03892  24 sgatstsssSsCsTcsctsSC 44 
                    +t+   +++++T+ ++sS+
  MMETSP1174-20130828|13103_1 222 PRSTTNAATATTTTTASSSSS 242
                  467888899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 846.93
//
Query:       MMETSP1174-20130828|13107_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|13105_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-06   22.6  29.5    6.4e-06   22.0  20.5    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.019   10.5  29.5      0.028    9.9  20.5    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  20.5   3.1e-09   6.4e-06     240     441 ..     115     316 ..     107     334 .. 0.55

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.1e-09
    TIGR02168 240 eleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeq.laslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelq 441
                  +l e+++e+  + ++ + l+ + +e+e el+ lr++++e+e+e++ lqke ++l +++ +++ ++ + ++++   ek+++ le ++++ +++ e ++ + +++++e++ l+ +l +++++l++a++e ++++++++++e++ e+ ++ + ++e++ l++++ + + l++  e+ e   +r  +e+e l+k++ee ++ +++++
  MMETSP1174-20130828|13105_1 115 KLYEAQKEIGGLIKRSQILRVADEEKERELKILREADKEKEREIKILQKENKRLMNAMTEKDVQLGKREKNRVYNEKKYNDLEGSVRKFQERVESQSIKITKMQTETDGLRGNLVEAKNQLKNAREESANAKRKQAAAEKRCEAHKRSLVDAEKTrLDDQAIHASCLQNMEEAHEGIIQRKCDEVEGLRKRIEE-KETMDAVK 316
                  44445555555555555555555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666665555554443133333333333333344444444455555555555552.22233333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  20.5   1.4e-05     0.028     274     454 ..     138     309 ..     107     336 .. 0.35

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.4e-05
    TIGR02169 274 kleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikka 454
                  + +e + ki ++++ e     ++++ l+ e ++l +a+ ek  +l + e+++   e++++ l+  ++++++++e++ ++ +k+++e + l+ +l e +++l++  +e+a++++++++++++ e+ k+ l + +  + rl +++    + l++++++ e+i +++    +e+e l+++i+++
  MMETSP1174-20130828|13105_1 138 EEKERELKILREADKE---KEREIKILQKENKRLMNAMTEKDVQLGKREKNRVYNEKKYNDLEGSVRKFQERVESQSIKITKMQTETDGLRGNLVEAKNQLKNAREESANAKRKQAAAEKRCEAHKRSLVDAE--KTRLDDQAI-HASCLQNMEEAHEGIIQRK---CDEVEGLRKRIEEK 309
                  1111111111111111...123333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333..333322221.1122222222222222221...12222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       536  (0.130668); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.90
# Mc/sec: 495.69
//
Query:       MMETSP1174-20130828|13108_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.59
# Mc/sec: 422.81
//
Query:       MMETSP1174-20130828|13115_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 732.33
//
Query:       MMETSP1174-20130828|13110_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   23.8   8.6    5.4e-06   23.8   5.9    1.5  2  TIGR00900 2A0121: H+ Antiporter protein
    0.00014   18.7  11.5    0.00078   16.3   8.0    1.9  1  TIGR00882 2A0105: oligosaccharide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   5.9   2.7e-09   5.4e-06      38     260 ..      56     278 ..      42     326 .. 0.77
   2 ?   -4.0   0.1      0.75   1.5e+03     133     152 ..     355     374 ..     352     376 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.7e-09
    TIGR00900  38 laalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallg.....leiwmvlvvalilsiaq..afftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdavgflisallivsvripkkaaseeeelseavlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskvlrrssvevgvv.laafglGal 260
                   +  + +l  v+v pi  + +D +  ++ +  + l +  +++++  v l g      e+  v++v l + + +  ++ +p   a++ +++     + a + s++  sl+   +   +g+l+ + g+ a++     ++l+ a  +++++     +   ++ +      +++G+k++++n+ L ++l+++++f++++a +  v++p+ +++ ++ +    g++ +++  +G  
  MMETSP1174-20130828|13110_1  56 AMRGISTLTKVFVQPIWAACGDTYGERATLLVSILFSSFALFLVRYVVLSGdgdggEEMHAVYAVSLARMFRSsaSAVSPVNDALVLAVLNG---ASAYGGSRMFGSLAWGASSLAAGVLIDWYGFGALFTFIYATSLLYACCLLTIPSMRRHK---SPTA-TASSTMKDGFKLLWSNRSLQAVLAIEFIFSFAMATAD-VIVPFQFEQQFQTTRATNGIAaMISIVCGIP 278
                  44557788899999999999999999999999999999999999999998888888888889888887766541145677788888888776...57999999999**999999***********99988766555555555555544433333...2222.455799**************************99998.*********9***999999862456666655 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.75
    TIGR00900 133 qlvrslieivgPgiggllva 152
                  ++++   + +g g+gg++++
  MMETSP1174-20130828|13110_1 355 SMLTLAYYSLGNGLGGFVMS 374
                  56666677888889998875 PP

>> TIGR00882  2A0105: oligosaccharide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   8.0   3.8e-07   0.00078      11     240 ..      26     260 ..      19     303 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.8e-07
    TIGR00882  11 fflyffimsayfplfpiwlkdvlglsktetGivfsvislfsilfqplfGlisdklGlkkkllwvislllvlfapffiyvfe.pllqlnilvGalvGgly...lGlvfsagagaieayiekv...srnskfeyGkarvfGclGyalcasiaGil...fsidpslvfwlgsg..aalilalllllakdkasdsakvadalganas.avslkkvlelfrqrklwvlvlyvvGvasvydvfdqqfav 240
                   f+   + + +  + p+wl    g s t +G +  + +l+ +  qp++    d  G + +ll   s+   lf+ f +++    +l  +   G  + ++y   l  +f + a+a+    + +     n +  yG +r+fG+l ++ ++  aG+l   ++    ++f  +++   a  l+ +  + ++k s +a+   ++    +   s +++ +++  + ++ + + +  v   ++ f+qqf +
  MMETSP1174-20130828|13110_1  26 CFFQTAMTAPWNRFAPLWLG-SRGYSVTSLGAMRGISTLTKVFVQPIWAACGDTYGERATLLV--SI---LFSSFALFLVRyVVLSGDGDGGEEMHAVYavsLARMFRSSASAVSPVNDALvlaVLNGASAYGGSRMFGSLAWGASSLAAGVLidwYGFGALFTFIYATSllYACCLLTIPSMRRHK-SPTATASSTMKDGFKlLWSNRSLQAVLAIEFIFSFAMATADVIVPFQ-FEQQFQT 260
                  4444444555667999**96.6799***********************************985..44...4555555544313556666666666655533377789988888866655541113567889*********************93334556667775544311344455555555555.44455555555443304456666667777777777777777766665.7777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1301.89
//
Query:       MMETSP1174-20130828|13117_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.5   0.1      0.014   12.3   0.1    1.1  1  TIGR02750 TraN_Ftype: type-F conjugative transfer system mating-pair stabilization protein TraN


Domain annotation for each model (and alignments):
>> TIGR02750  TraN_Ftype: type-F conjugative transfer system mating-pair stabilization protein TraN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.5e-06     0.014     128     228 ..     118     220 ..      66     267 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-06
    TIGR02750 128 kkgkqCkieesekqCessktleevtCtktlkvtvksekvesysltva...ykrsgvltvksvkveeagltncasgkvsvt..riekdlpafavllkakceeisvtl 228
                     + C+ ++s+ +Ce++  ++ v C++   +  ++++ +s sl ++   y+r++    +++ +++ g++  a+  +s+     ++++p+++ +++++ +++s+  
  MMETSP1174-20130828|13117_1 118 SAISACSERQSQLHCEKDDDVPVVACDNAGDLLLQNKEAASVSLISSsisYSRRNG---NASPITSSGTSGVAEVPTSYSrrASTRRKPPPPGQKTRRRKSMSMRP 220
                  56689**99*************************9999999888766222555554...44446666666555555555400455568888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1142.91
//
Query:       MMETSP1174-20130828|13123_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 927.07
//
Query:       MMETSP1174-20130828|13116_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.61
# Mc/sec: 1235.50
//
Query:       MMETSP1174-20130828|13126_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   24.7   0.0    1.8e-06   24.5   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.4e-06   23.9   0.0    3.7e-06   23.8   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00051   16.2   0.0    0.00052   16.2   0.0    1.0  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
     0.0038   12.8   0.0     0.0038   12.8   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
  ------ inclusion threshold ------
      0.016   11.5   0.1      0.017   11.5   0.1    1.0  1  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.2e-09   1.8e-06      17      64 ..       4      56 .]       2      56 .] 0.85

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 2.2e-09
    TIGR01389 17 gqeeiieevldgrdvlavlPtGGGkslCYqvPaLllk.....gltvvisPLis 64
                 +q++   ++++gr++++  PtG Gksl + + aL l      g+t+v+ PLi+
  MMETSP1174-20130828|13126_1  4 RQAAACVSLVRGRNTFVHQPTGSGKSLVWLLAALALAkmgrvGVTIVVFPLIA 56
                 577778899***********************997543334499********7 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.6e-09   3.7e-06      16      61 ..       5      55 ..       2      56 .] 0.83

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.6e-09
    TIGR00614 16 qlevinavlegrdalvvmatGgGksLCyqlpavvsd.....gltlvisPLi 61
                 q  +  + ++gr+++v  +tG GksL + l+a+ +      g+t+v+ PLi
  MMETSP1174-20130828|13126_1  5 QAAACVSLVRGRNTFVHQPTGSGKSLVWLLAALALAkmgrvGVTIVVFPLI 55
                 6667778899**********************987623333689******9 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.3e-07   0.00052     264     293 ..      15      44 ..       7      54 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.3e-07
    TIGR01407 264 eekslIeAatGtGKtlgYLLpalylakeek 293
                   +++++  +tG+GK+l +LL+al+lak ++
  MMETSP1174-20130828|13126_1  15 GRNTFVHQPTGSGKSLVWLLAALALAKMGR 44 
                  56889*********************9443 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.6e-06    0.0038      18      53 ..       5      40 ..       1      56 [] 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.6e-06
    TIGR04121 18 QkevleaaeegesglliapTGaGKTlavflpsliel 53
                 Q ++  ++ +g++++++ pTG+GK l   l++l+ +
  MMETSP1174-20130828|13126_1  5 QAAACVSLVRGRNTFVHQPTGSGKSLVWLLAALALA 40
                 6777778899****************9999998754 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     2e-05     0.017      13      57 ..      12      56 .]       6      56 .] 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
    TIGR03117 13 lelkrialveaatGvGktlamllaaeallkerpdakvaiavPtla 57
                 l  +r ++v   tG Gk+l  llaa+al+k  + + +++  P +a
  MMETSP1174-20130828|13126_1 12 LVRGRNTFVHQPTGSGKSLVWLLAALALAKMGRVGVTIVVFPLIA 56
                 56678899**********************988888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|13128_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|13127_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   28.3   0.1    1.3e-07   28.3   0.1    1.5  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.4e-06   25.4   0.9    1.7e-06   25.1   0.1    1.5  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.4e-06   23.9   0.0    5.6e-06   23.6   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00011   18.9   0.1    0.00021   18.0   0.1    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   1.3e-10   1.3e-07     427     505 ..       8      82 ..       2      86 .. 0.90
   2 ?   -2.2   0.4      0.23   2.4e+02     105     138 ..     133     166 ..     105     178 .. 0.45

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 1.3e-10
    TIGR01642 427 deeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedky 505
                   ee+++ +e++ ee s yGt+ + ++    +++     +G v+ +++d+++a+ A + l Gr +++r +v+ f +   +
  MMETSP1174-20130828|13127_1   8 TEEFDDFYEEIYEELSTYGTIEECNVCENLGEHM----TGNVYAKFTDEEDADAAIKALLGRFYAGRALVVDFSPVTDF 82 
                  689**********************999877665....799*******************************9876666 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.23
    TIGR01642 105 kkddkkrslwdvkppkyeavtavqakasqvansv 138
                     d+ r+      p+++ +t +  ++++ +n+ 
  MMETSP1174-20130828|13127_1 133 PDPDHARKSNAPLTPHFKRATTTTTRNNNNNNNK 166
                  3333344444444444554444444444444333 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   1.7e-09   1.7e-06     421     485 ..       8      74 ..       2      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.7e-09
    TIGR01622 421 eenfdkeikdDvkeEcskkggvvhiyvdk...knsaGkvYlkfdsveaalaavkalngRyFagklitA 485
                   e+ + +  +++ eE s +g + +  v +   + + G+vY kf + e+a aa+kal gR++ag+ +  
  MMETSP1174-20130828|13127_1   8 TEE-FDDFYEEIYEELSTYGTIEECNVCEnlgEHMTGNVYAKFTDEEDADAAIKALLGRFYAGRALVV 74 
                  333.44677788899999998877666541116799***************************97655 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.5e-09   5.6e-06     300     444 ..      16     168 ..       8     178 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.5e-09
    TIGR01628 300 ekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf...............mq.asaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapn 444
                  e++ e+ + +G+i  ++v  +  e+  g  +  f+++e+A +A++ l g+   g+ L v +    + R ar +q                 +q  +  +rql+ ++   + a        ++++     + ++  a+   +fk+ +++++ +n++++++p 
  MMETSP1174-20130828|13127_1  16 EEIYEELSTYGTIEECNVCENLGEHMTGNVYAKFTDEEDADAAIKALLGRFYAGRALVVDFSPVTDFREARCRQFEesqcarggycnfmhiKQpSRKLMRQLAAAREARAEA--------NNAPDPDPDHARKSNAPLTPHFKRATTTTTRNNNNNNNKPI 168
                  5778999**************99************************************99887777777766543444666666555433333333334443333333333........22222222222222222222333333333333333333333 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1     2e-07   0.00021     525     594 ..      12      75 ..       6      84 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2e-07
    TIGR01645 525 detlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvae 594
                  d++  +ei ee + +g+++   +  e+ g      +   ++ +f++  ++d a++al Grf++Gr +v +
  MMETSP1174-20130828|13127_1  12 DDF-YEEIYEELSTYGTIEECNVC-ENLG----EHMTGNVYAKFTDEEDADAAIKALLGRFYAGRALVVD 75 
                  554.579***********998665.4455....356778999***********************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 675.03
//
Query:       MMETSP1174-20130828|13118_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-86  285.2   1.6    4.7e-86  285.0   1.1    1.0  1  TIGR01028 S7_S5_E_A: ribosomal protein S7
    4.1e-15   53.9   0.5    5.1e-15   53.6   0.3    1.1  1  TIGR01029 rpsG_bact: ribosomal protein S7


Domain annotation for each model (and alignments):
>> TIGR01028  S7_S5_E_A: ribosomal protein S7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.0   1.1   2.3e-89   4.7e-86       2     186 .]       8     195 .]       7     195 .] 0.99

  Alignments for each domain:
  == domain 1    score: 285.0 bits;  conditional E-value: 2.3e-89
    TIGR01028   2 ikvfgkwstedvevkdaslkdyialeek...lvphtaGryakkkfakakvsiverlinkvmrkernngkklkavkivkeafeiiekrtkknPiqvlvdaienagPredttrvkygGiayrqavdvsplrrvdvalrlialGareaafknkksiaealaeeiiaaakkdsksyaikkkeelervaksar 186
                  i +fgkw+ edve++d+sl+dyia+++k   ++phtaGrya+k+f+ka++++ erl   +m ++rn+gkkl+a++iv++++eii+ +t++nPiqv+v+ai+nagPred+trv+ +G+++rqavd+sp rrv+ al li++Garea+f+n+k+iae+la+eii+aak++s+syaikkk+e+ervak++r
  MMETSP1174-20130828|13118_1   8 IELFGKWNYEDVEINDISLEDYIAVNKKncvYLPHTAGRYARKRFRKAQCPLSERLCVCLMYHGRNSGKKLMAMRIVRHTLEIIQILTDQNPIQVMVNAIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNNALYLITQGAREATFRNIKTIAECLADEIINAAKGSSNSYAIKKKDEIERVAKANR 195
                  889***********************99999**********************************************************************************************************************************************************997 PP

>> TIGR01029  rpsG_bact: ribosomal protein S7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.3   2.5e-18   5.1e-15      29     147 ..      72     195 .]      46     195 .] 0.88

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 2.5e-18
    TIGR01029  29 mldGKKslaekivykaleklkkktkkdplevfekalenvkPllevksrrvgGatyqvPvevreerrealairWlveaarkr...keksmaekLanelldalnn..eGaaikkredtHkmaeaNk 147
                    +GKK +a +iv ++le ++  t+++p++v+ +a+ n  P  +   +  +G  ++  v +++ rr   a+  + + ar+    + k++ae+La+e+++a++   +  aikk++++ ++a+aN+
  MMETSP1174-20130828|13118_1  72 RNSGKKLMAMRIVRHTLEIIQILTDQNPIQVMVNAIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNNALYLITQGAREAtfrNIKTIAECLADEIINAAKGssNSYAIKKKDEIERVAKANR 195
                  4679****************************************9999999********************9999988874444999**************86115689**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 779.94
//
Query:       MMETSP1174-20130828|13129_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   14.0   1.8     0.0072   13.4   1.2    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.2   1.7e-06    0.0072      29      69 ..     188     231 ..     179     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-06
    TIGR00599  29 ChvCk.dff..kaPvltsCsHtFCslCiRrcLseepkCPlCrae 69 
                  C +C  df   ++  l +C H F   C+ ++L +++ CP Cra+
  MMETSP1174-20130828|13129_1 188 CPICLgDFVtgDTVRLLPCKHQFHRGCVDQWLMVNATCPSCRAP 231
                  77774367622344578*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|13132_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.82
# Mc/sec: 532.79
//
Query:       MMETSP1174-20130828|13135_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 625.88
//
Query:       MMETSP1174-20130828|13131_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   14.2   0.4       0.28    8.8   0.0    2.2  2  TIGR02611 TIGR02611: TIGR02611 family protein
     0.0082   11.8   3.0      0.014   11.0   0.3    1.9  2  TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
  ------ inclusion threshold ------
        7.6    2.1   9.7        1.8    4.2   0.2    2.0  2  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR02611  TIGR02611: TIGR02611 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0078        11      21      44 ..      65      88 ..      32      98 .. 0.60
   2 !    8.8   0.0   0.00021      0.28      16      54 ..     124     162 ..     113     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0078
    TIGR02611 21 gfvvrplvlvvGlvvlvvGiiilP 44
                  + +r+  ++v lv++vv +++ P
  MMETSP1174-20130828|13131_1 65 ALHYRTNYIIVALVIIVVSLLTSP 88
                 233444445555555555444444 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00021
    TIGR02611  16 krkaygfvvrplvlvvGlvvlvvGiiilPlPgpGWlvvF 54 
                  k+ a g+v   l+l+ G    ++Gii+lPl   G  +vF
  MMETSP1174-20130828|13131_1 124 KAIACGVVGVMLLLITGQLFKLLGIIMLPLLLVGLHTVF 162
                  66777888888999****************999988888 PP

>> TIGR00915  2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.3   0.1     0.009        12     511     552 ..      41      83 ..      32      98 .. 0.82
   2 !   11.0   0.3     1e-05     0.014     977    1041 ..     101     171 ..      95     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.009
    TIGR00915 511 gffgWfnrvfdslteryens.vakilkkrlrvllvyvllvggm 552
                   ff+ f+   ++++++ e++ v++ l+ r+++++v ++++++ 
  MMETSP1174-20130828|13131_1  41 EFFSHFKAPREWTKDELEKRvVTNALHYRTNYIIVALVIIVVS 83 
                  7999***999**9999987516789999999999988877654 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1e-05
    TIGR00915  977 tslafilGvlPlaiatGagagsqkaigtgvlgGmv...tat...lLaiffvPlfyvvvrklfkekskekee 1041
                   t++a+++   P++i   a  +s+kai+ gv+g m+   t+    lL i++ Pl+ v ++++f++++ +++ 
  MMETSP1174-20130828|13131_1  101 TAYAMVIYQKPIVIQGRAYNTSEKAIACGVVGVMLlliTGQlfkLLGIIMLPLLLVGLHTVFRQRNLKSKF 171 
                   7888899999*******************999985222554333799***************999877654 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   2.7    0.0084        12     717     764 ..      65     112 ..      60     115 .. 0.88
   2 ?    4.2   0.2    0.0013       1.8     719     765 ..     125     172 ..     117     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0084
    TIGR03480 717 AfilalvaitvlLllvLrrvrdvllvLvPlllaalltvaamvllgipl 764
                  A  +    i+v L++++ ++  + + L  l+l++ +t+ amv+ + p+
  MMETSP1174-20130828|13131_1  65 ALHYRTNYIIVALVIIVVSLLTSPFLLFVLILSGSFTAYAMVIYQKPI 112
                  5556666899*********************************99886 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0013
    TIGR03480 719 ilalvaitvlLllvLrrvrdvl.lvLvPlllaalltvaamvllgiplN 765
                  ++a   + v+Lll+  ++ + l ++++Plll +l tv     l+  +N
  MMETSP1174-20130828|13131_1 125 AIACGVVGVMLLLITGQLFKLLgIIMLPLLLVGLHTVFRQRNLKSKFN 172
                  456666777777766666655538999***999999988877777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 691.37
//
Query:       MMETSP1174-20130828|13133_1  [L=1212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066    9.7   0.5        0.1    9.0   0.4    1.2  1  TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein


Domain annotation for each model (and alignments):
>> TIGR02123  TRAP_fused: TRAP transporter, 4TM/12TM fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.4   2.5e-05       0.1      33     114 ..     624     710 ..     610     728 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 2.5e-05
    TIGR02123  33 lhlalvlllifllypatk....klkkdk.vpwydwllalvalaaalylvlnykellerrvgil..tttdvvvgvllillvlEatRRtvG 114
                   +l+++++l+f+ y  +     k + d+ ++  +w+la +a+    ++++  +el++++   +  t tdvv++v  ++l++ + R + G
  MMETSP1174-20130828|13133_1 624 EMLGVAMYLTFMSYYVQIftgeKETIDSiIQKCAWILAFLAV--WKFMMTRSPELTFKQNFLTheTFTDVVISVTNLVLLIVLFRDCFG 710
                  5789999****9998665444333333346677777666655..56777888888876544446699***********99988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.16s 00:00:00.90 Elapsed: 00:00:00.52
# Mc/sec: 3076.36
//
Query:       MMETSP1174-20130828|13139_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1174-20130828|13143_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.028   11.5   0.0    1.1  1  TIGR03679 arCOG00187: arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
      0.034   11.4   0.0      0.038   11.3   0.0    1.1  1  TIGR00289 TIGR00289: TIGR00289 family protein


Domain annotation for each model (and alignments):
>> TIGR03679  arCOG00187: arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05     0.028     100     148 ..      24      72 ..      15      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
    TIGR03679 100 QkeriericeelglkvfaPlWkkdqeellrelveagfeviivsvsaeGL 148
                  Q++r+ r c++  +  + P W++d +++  ++ ++ ++++i +   ++L
  MMETSP1174-20130828|13143_1  24 QESRLTRSCRRQCVLKVVPDWRCDVDSVNLSVSKEVIDAVIGRRDVMPL 72 
                  99*************************************9987666666 PP

>> TIGR00289  TIGR00289: TIGR00289 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05     0.038      96     134 ..      21      59 ..       8      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
    TIGR00289  96 seyqksridkvcrelGlksvaplwkkdpeklleevaekf 134
                     q sr+ + cr+  +  v p w+ d + +   v+++ 
  MMETSP1174-20130828|13143_1  21 GLLQESRLTRSCRRQCVLKVVPDWRCDVDSVNLSVSKEV 59 
                  5679**************************999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|13144_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   18.6   0.0    0.00023   18.1   0.0    1.2  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.6e-08   0.00023     267     314 ..     141     188 ..     133     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.6e-08
    TIGR01205 267 RvDfflekegeiylnEiNtiPGmtaislfpklakaagvefeeLveeil 314
                   +Df+l+++g  +l+E N  PG+t++  +  + + ++  +++L++ i+
  MMETSP1174-20130828|13144_1 141 GCDFILDQDGAAWLLEANCPPGITTATGILAAEELHNTVMRDLISLIV 188
                  69***********************99999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1246.56
//
Query:       MMETSP1174-20130828|13145_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.93    5.9   4.8        1.2    5.5   3.3    1.1  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.3    0.0003       1.2     281     340 ..      29     101 ..      11     124 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0003
    TIGR02031 281 qee.ppppPpPp....epesegeeeedeeeeeeee........keeeqlpeelildAveallpeeiLellqka 340
                   ++ pp +P+P     +p+++ ee++ e +ee +e        +e+++    ++++  ++  p+ei   + ++
  MMETSP1174-20130828|13145_1  29 PMQpPPAEPSPLpkapQPPPSHEEDPVECPEEGPEecpeeewiDEDDDGHCSFFVERRNGHRPKEIFGKHSNS 101
                  3443333344432221222323333333222222233223333444466667777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1142.65
//
Query:       MMETSP1174-20130828|13150_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|13151_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|13152_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|13154_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|13155_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1062.35
//
Query:       MMETSP1174-20130828|13160_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 892.50
//
Query:       MMETSP1174-20130828|13167_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|13165_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 1036.11
//
Query:       MMETSP1174-20130828|13170_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.76
# Mc/sec: 237.93
//
Query:       MMETSP1174-20130828|13169_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.60
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|13173_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 728.07
//
Query:       MMETSP1174-20130828|13174_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|13176_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 286.51
//
Query:       MMETSP1174-20130828|13177_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.67
# Mc/sec: 460.98
//
Query:       MMETSP1174-20130828|13175_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.60
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|13178_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   13.9   0.8      0.023   10.4   0.1    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.012   12.1   0.0      0.014   11.9   0.0    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   1.1e-05     0.023      50     135 ..       6      91 ..       4     106 .. 0.91
   2 !    2.0   0.0    0.0038       7.8     705     732 ..     135     162 ..     127     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.1e-05
    TIGR02917  50 qkdpndaeaRflLgkiyleqGdaaaAekeLrkAlslgyskeqvlplLarayllqgkfqkvldelekksslddeeaaellalrglAa 135
                  + +p +a  R  Lg ++ ++Gd+ +A  e+r A+   +  ++      r+++  g++ ++++ ++ ++ ++de ++ l+ + ++A 
  MMETSP1174-20130828|13178_1   6 ARNPRNAPNRVKLGLALEKTGDLRGALSEFRAAVTIAPTYTKGIRNVERLVSQLGEDAETVEAAPITTQQADELRMPLKKADAVAT 91 
                  578999999***********************************************************999999999988877775 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0038
    TIGR02917 705 gfeleGdlalrqkdykaAiqaykkalkr 732
                   f+ eG+ +++ +dy aA++ay++a+k 
  MMETSP1174-20130828|13178_1 135 AFKDEGNGHVAAQDYLAAVAAYTQAIKS 162
                  5666788888888888888888888874 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.7e-06     0.014     129     203 ..     135     217 ..      80     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.7e-06
    TIGR00990 129 klkekGnkayrnkdfdkaielyskall......lkedPvyysnraacynaladlekvve..dttaaleldpdyvkalnrrana 203
                  ++k++Gn     +d+  a+  y++a+       l +d   y+nra  + +    + v +  d   a+e dpd+ k    r +a
  MMETSP1174-20130828|13178_1 135 AFKDEGNGHVAAQDYLAAVAAYTQAIKsleaqgLPPDAKLYTNRAVSHLSCNPPKYVGAamDGQLAMEADPDWWKGYWYRGQA 217
                  78**********************9974344445689**************99888865225677899999999988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 803.41
//
Query:       MMETSP1174-20130828|13180_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 168.40
//
Query:       MMETSP1174-20130828|13179_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1009.72
//
Query:       MMETSP1174-20130828|13182_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|13184_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1577.27
//
Query:       MMETSP1174-20130828|13186_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1185.21
//
Query:       MMETSP1174-20130828|13188_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   11.9   2.2       0.24   10.1   1.2    2.3  1  TIGR01682 moaD: molybdopterin converting factor, subunit 1
       0.42    6.3  10.5       0.26    7.0   4.0    2.6  3  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
        1.9    6.7   6.9        9.6    4.4   1.4    3.2  2  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR01682  moaD: molybdopterin converting factor, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.2   0.00018      0.24       6      64 ..     465     520 ..     464     532 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00018
    TIGR01682   6 FAkvrekagtdeetlelpdevttveelkellakegpellesrkqvrvAvneeyvedeal 64 
                  FAk  e  ++++   e+ d  + v el++ll++++ + +e +++ ++A++e + e ++ 
  MMETSP1174-20130828|13188_1 465 FAKQSEMNKVEH---EMSDMGESVSELEALLKEQSRKGTENQEKAQMAIDEALKELQNE 520
                  888888888888...677777889999999999998999************98875544 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.027        37     204     232 ..     161     189 ..     154     208 .. 0.78
   2 ?   -1.7   0.0     0.082   1.1e+02     159     205 ..     295     341 ..     288     349 .. 0.82
   3 ?    7.0   4.0   0.00019      0.26     547     651 ..     454     558 ..     451     567 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.027
    TIGR03480 204 aklakrrrlilvkPkldysslepaekaie 232
                  +++a+++++++++P+ + +++ pa +a +
  MMETSP1174-20130828|13188_1 161 TTTATEEKILTARPRAEIDQMDPARRALA 189
                  44566799****************99875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.082
    TIGR03480 159 eglkkgeaeleglaalldalaealeavlegksaalswqellsgkeak 205
                  + l++ + ++++  ++l+ l++ l+++ ++k++++ +++l+ g+ a 
  MMETSP1174-20130828|13188_1 295 ASLARRQRNETEALNALKLLDDDLNEAFSQKKNEFKLSRLMPGGLAP 341
                  5666777777778889999*********************9998765 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00019
    TIGR03480 547 iadlalvlgptlava.eekpap.saeeeaaalrklaaklekalekeekpdakaakkLaeslarllakakaqaatlealqkallatLpeelerlrdaleaepvtledl 651
                  ia+ al  ++  a++ e ++++ + ++  +++ +l a l++++ k ++ + ka  +++e+l++l +++  ++a++e+++++ll+  +e+l++l++++ +++  + +l
  MMETSP1174-20130828|13188_1 454 IAQHALEHADEFAKQsEMNKVEhEMSDMGESVSELEALLKEQSRKGTENQEKAQMAIDEALKEL-QNEVDHKASAEEIDDELLK-VREQLDQLQKSTYPKETMERAL 558
                  66677766666444403333334677888999999999999999999999**************.9999999999****99986.799********99988777666 PP

>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.4     0.007       9.6      38      67 ..     230     259 ..     223     261 .. 0.84
   2 ?    3.0   0.2     0.019        26      41      68 ..     468     495 ..     457     499 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.007
    TIGR02976  38 tddlalLeelsekakrleeRidtLEriLde 67 
                  ++ l  Lee s++ + l eRi+ LE+++++
  MMETSP1174-20130828|13188_1 230 EQRLDVLEENSREVDDLTERINELEEMIED 259
                  5566789999999************99875 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.019
    TIGR02976  41 lalLeelsekakrleeRidtLEriLdee 68 
                  ++ ++++++++  + e +  LE++L+e+
  MMETSP1174-20130828|13188_1 468 QSEMNKVEHEMSDMGESVSELEALLKEQ 495
                  67789999*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       386  (0.0941004); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.70
# Mc/sec: 1384.00
//
Query:       MMETSP1174-20130828|13189_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-15   53.3   0.1    1.1e-14   52.4   0.1    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    5.5e-09   32.8   0.3    5.5e-09   32.8   0.2    1.7  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   5.3e-18   1.1e-14       1      69 [.      66     131 ..      66     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 5.3e-18
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghag 69 
                  dYY++Lg++  A++ ei++AY ++a+  HPD ++    + + + e  +Ay  L de+kr++YD++   +
  MMETSP1174-20130828|13189_1  66 DYYNVLGLKPGAERGEIRRAYARQARVLHPDLQN---GTRQEYAECVDAYATLRDERKRRNYDRMRATD 131
                  9*******************************99...66799**********************86544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.2   2.7e-12   5.5e-09       3      65 ..      66     126 ..      64     131 .. 0.94
   2 ?   -1.7   0.8     0.069   1.4e+02     597     648 ..     192     245 ..     181     284 .. 0.53

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 2.7e-12
    TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65 
                  Dyy+vLg+++ a+  ei++a+ + a+  hPD  + +   + +ae  +a+  L + +kr +yD+
  MMETSP1174-20130828|13189_1  66 DYYNVLGLKPGAERGEIRRAYARQARVLHPDLQNGT--RQEYAECVDAYATLRDERKRRNYDR 126
                  9******************************98865..6779********************7 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.069
    TIGR03835 597 kvdaklegiDgtnksLlekidd..lsdkkskLlkkLflteqlpfisqpeaveiq 648
                  k++a+ e   + n+ L  ++++  ++  k k l+k  + e l  +  p+a + +
  MMETSP1174-20130828|13189_1 192 KAEAEKEMAQAENEMLKARVEEteIEAAKAKKLQKPAEAEVLKQSEDPKAARSK 245
                  444444444444444444443311333333444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 776.10
//
Query:       MMETSP1174-20130828|13187_1  [L=1671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.16s 00:00:01.13 Elapsed: 00:00:01.15
# Mc/sec: 1901.33
//
Query:       MMETSP1174-20130828|13190_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 2543.20
//
Query:       MMETSP1174-20130828|13192_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 463.75
//
Query:       MMETSP1174-20130828|13195_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 587.00
//
Query:       MMETSP1174-20130828|13197_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-72  239.7   0.0    1.9e-71  238.7   0.0    1.4  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00018   18.8   0.7     0.0024   15.2   0.0    2.4  3  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.7   0.0   9.4e-75   1.9e-71      43     357 ..     133     453 ..     102     459 .. 0.89
   2 ?   -3.0   0.0      0.22   4.4e+02     370     413 ..     487     530 ..     486     536 .. 0.84

  Alignments for each domain:
  == domain 1    score: 238.7 bits;  conditional E-value: 9.4e-75
    TIGR01982  43 arkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipv.sdleklkeaG..ldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvp.sdtdlaeleqairavge 357
                   +  +++  lr+ +e+lG ++iK+GQ++++ + l+p+ +++e +   d+ pp++++++r+++e+elg ++eelF+++++ PlA+ASiaQvh+A + +g++V++Kv++Pg+ +++++d++ l+ +a+l e ++pe  rl    + +++++++  Eld+++Ea++ + ++e++k+++   k + P+ + e+t+  vlt+++idg+p+ +d  ++k++   ++ ++  ++ + +    vl+  fFHaD+H GN+lv+ dgki+++DfGivg+l +e+  ++  +  ++le d++++a+ ++ +g+   s +d   ++++ir++  
  MMETSP1174-20130828|13197_1 133 LDSAQYARTLRRIFERLGATYIKIGQFIASSPTLFPAALVTEFEACLDSSPPVPFSVIRASVEKELGGKLEELFDSVDQSPLATASIAQVHAA-TFKGEKVVIKVRKPGVGDTLKTDLTFLNIAARLSEAVAPELARLSLAGIASDLRESMLGELDFTQEAERLTVFGEFLKANElegKATSPRAIMERTTTGVLTMSRIDGVPLiDDSLNIKTKDpnINIESAVAAALDTWALSVLECDFFHADVHGGNLLVQPDGKIAFIDFGIVGTLPKETWGAVTSMREAVLEGDADKLAQSLIGLGVADeSRVDKTVFASDIRNMLS 453
                  346778999**********************************************************************************87.578************************************************************************9988654447999**********************6266777777652255566666667788889******************************************************************88526789999*****99865 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.22
    TIGR01982 370 gklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdld 413
                  ++l  +l+ ++e+ +l ++  + LL K  l+ +   ++l p+ld
  MMETSP1174-20130828|13197_1 487 AQLAFDLVTVSERNGLVLPQAFGLLVKQGLYFDRYLKTLAPNLD 530
                  6677789999*****************99988888888888877 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.022        46       8      27 ..     220     239 ..     215     241 .. 0.89
   2 !   15.2   0.0   1.2e-06    0.0024      62     135 ..     314     397 ..     286     418 .. 0.81
   3 ?   -2.9   0.0       0.4   8.1e+02     130     161 ..     428     460 ..     420     465 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.022
    TIGR03724   8 aeiylgeflglkavvKeRvk 27 
                  a+++ ++f g+k+v+K+R++
  MMETSP1174-20130828|13197_1 220 AQVHAATFKGEKVVIKVRKP 239
                  7899999***********86 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.2e-06
    TIGR03724  62 Pvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGL 135
                  P  ++  + +  ++m++i+g +l d   + ++          ++ ++ +++  + + ++ h D++  N++v+ d+k+ +iDfG+
  MMETSP1174-20130828|13197_1 314 PRAIMERTTTGVLTMSRIDGVPLIDDSLNIKTkdpniniesAVAAALDTWALSVLECDFFHADVHGGNLLVQpDGKIAFIDFGI 397
                  55555566778999******99876443333336788777667777777888899****************7699********7 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.4
    TIGR03724 130 liDfGLgkksk.evedkavDlhvlkrslesthe 161
                  li +G +  s+ +    a D++ +  sle+ ++
  MMETSP1174-20130828|13197_1 428 LIGLGVADESRvDKTVFASDIRNMLSSLEGFQD 460
                  566666665551344579999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1475.64
//
Query:       MMETSP1174-20130828|13198_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1494.98
//
Query:       MMETSP1174-20130828|13201_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 1194.04
//
Query:       MMETSP1174-20130828|13203_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 920.04
//
Query:       MMETSP1174-20130828|13202_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 2718.98
//
Query:       MMETSP1174-20130828|13200_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-38  126.4   0.5    9.2e-38  126.1   0.3    1.1  1  TIGR00523 eIF-1A: translation initiation factor eIF-1A
  ------ inclusion threshold ------
      0.011   13.6   0.0      0.017   13.0   0.0    1.3  1  TIGR00008 infA: translation initiation factor IF-1


Domain annotation for each model (and alignments):
>> TIGR00523  eIF-1A: translation initiation factor eIF-1A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.3   4.5e-41   9.2e-38       1      98 []      14     111 ..      14     111 .. 0.98

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 4.5e-41
    TIGR00523   1 rgkqdedqrrvrlprkeegeilgvvekllGagrvkvrcldGkkrlaripGklkkkiwireGdvvlvkpwefqddkadivwrytktevewlkrkGylke 98 
                  rgk+++++++++l  ke g+++++v ++lG+gr +  c+dG++rl++i+Gk++kk+w+  Gd+vlv ++efqddk+di+++y+ +e++ lk+ G+l+e
  MMETSP1174-20130828|13200_1  14 RGKNENEETKRQLEFKEPGQEYAQVVRMLGNGRCECYCFDGQTRLGHIRGKMRKKVWVSAGDIVLVGLREFQDDKVDIIHKYNADEARNLKNYGELPE 111
                  699********************************************************************************************975 PP

>> TIGR00008  infA: translation initiation factor IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.1e-06     0.017      10      67 ..      37      93 ..      33      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.1e-06
    TIGR00008 10 kvveslpnamfrveleNgvevlahisGkirknyiriLpgDkVkvelspYdltkGRIiy 67
                 +vv +l n++ +     g++ l+hi Gk+rk+ + +  gD V v l  ++  k  Ii+
  MMETSP1174-20130828|13200_1 37 QVVRMLGNGRCECYCFDGQTRLGHIRGKMRKK-VWVSAGDIVLVGLREFQDDKVDIIH 93
                 688889999999999999999********986.7899*******99999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 486.28
//
Query:       MMETSP1174-20130828|13205_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|13204_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1780.24
//
Query:       MMETSP1174-20130828|13206_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|13212_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 1221.55
//
Query:       MMETSP1174-20130828|13214_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|13210_1  [L=880]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-169  561.0   0.0   6.3e-169  560.7   0.0    1.1  1  TIGR00408 proS_fam_I: proline--tRNA ligase
    6.3e-25   85.9   0.1    1.2e-13   48.6   0.0    2.3  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    2.5e-17   60.8   0.1    3.9e-11   40.4   0.0    2.1  2  TIGR00418 thrS: threonine--tRNA ligase
    1.1e-05   22.0   0.1    2.4e-05   20.9   0.0    1.5  2  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    0.00014   19.5   0.0    0.00027   18.6   0.0    1.4  1  TIGR00011 YbaK_EbsC: YbaK/EbsC protein


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.7   0.0  7.6e-172  6.3e-169       3     475 .]     380     880 .]     378     880 .] 0.95

  Alignments for each domain:
  == domain 1    score: 560.7 bits;  conditional E-value: 7.6e-172
    TIGR00408   3 ekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaimpdg.ralqiatsHdLgqnFaktFeikfenkegekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkk..enkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkelleelkedlfkkAkelveekvkeveeleeikqalnekkgvvlvalkgeeeleeelkekvk..................atircieedld......vldl.gqkCikcerkakkyvllakay 475
                  +k+e+f++Wy +++ek+e+l+y+d++G+++l+p ++ +we+iqk++d+ +++ +ve+ yfPl++++  lekE++Hi+GF+pEv+++t+aG ++L+e++a+RPtsEt++y+ y+kw++s+rdLPlklnq++nv+R+E+k++ P+lR rEfl++E+Ht+ha+++ea+e v +il+lYk+++e+l a+Pv++g+k+e+ekFaG+ +t+++ea++    r++q atsH+LgqnF k+F+ikfe+k+    +++qts+Gl tR ig++i++HsDd+GLvlPp++ap qvv++pi+  k+  + + + ++ ++v++++k  +iRv+ d+rdn ++G+k++ +E+kG+P+r+e+g  +iek+++ +  R +  K ev+l++l++++  +l+e++ ++ +kA+e +++k++ v+e++++++ lne   + l++++ e++ e+e k ++k                  a+ +c + d++        d+   kC ++++ ak  vl +++y
  MMETSP1174-20130828|13210_1 380 KKSENFAQWYPEVVEKSEMLSYGDISGCYILRPWGYGVWEQIQKWFDNEIKKLDVENCYFPLFVSKGALEKEENHIEGFAPEVAWVTKAGDTDLAEPIAVRPTSETIMYPEYAKWIHSHRDLPLKLNQWNNVVRWEFKYPTPFLRSREFLWQEGHTAHANEQEADEMVYQILELYKQVYEQLCAVPVIKGLKTEEEKFAGGYFTTTCEAYIHGSgRSIQGATSHNLGQNFGKMFDIKFEDKDKVTRVPWQTSWGLTTRSIGVMIMVHSDDQGLVLPPRIAPCQVVIVPIVSSKSgmDPEVIDNYVSEVTKRIKDQGIRVKADNRDNyTAGWKYNYWEMKGVPIRVEIGASEIEKKTILLKLRYNGSKEEVNLADLSDRIPAVLDEIHANMLRKATEDRDKKLVVVKEWKDFVPNLNEGC-MCLTPFCDEQDAENEAKARSKaealdgededercatslaAKTLCKPYDQEgcrindLEDIsTLKCFFTGKPAKAWVLWGRSY 880
                  799*********************************************************************************************************************************************************************************9999**************************98655*************************************************************************99999875456677899****************************************************************************************************************98.*********************999**********999995555555444311110033334579999999999999999998 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.3e-12   1.9e-09      37     188 ..     405     561 ..     396     567 .. 0.91
   2 !   48.6   0.0   1.5e-16   1.2e-13     413     563 ..     601     756 ..     590     760 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 2.3e-12
    TIGR00409  37 sGlynylPlalrvlekvenivreemnkagaievllpalqs.aelWqesgRwdkygeellrlkDrkeref....vLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrl 188
                  sG y   P ++ v e++++   +e++k +  ++ +p ++s  +l +e +  + +++e+  +   ++ ++    ++ pt E  +    ++ i+s ++lP++l q ++  R E +     lR+REF+ +++   h++e+++++   ++ e Yk+++++l
  MMETSP1174-20130828|13210_1 405 SGCYILRPWGYGVWEQIQKWFDNEIKKLDVENCYFPLFVSkGALEKEENHIEGFAPEVAWVTKAGDTDLaepiAVRPTSETIMYPEYAKWIHSHRDLPLKLNQWNNVVRWEFKYPTPFLRSREFLWQEGHTAHANEQEADEMVYQILELYKQVYEQL 561
                  899*********************************9988468899999********9998888877652222799******9999********************************************************99999*****99876 PP

  == domain 2    score: 48.6 bits;  conditional E-value: 1.5e-16
    TIGR00409 413 hiFkLGtkYskalkatfldeegkeqvlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivv.....snvkdeeqkklaeevyselkakgvdvllDdrne.raGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikkaelke 563
                     +LG+++ k ++++f d++   +v     +G+  +R ++ ++  ++D++G++ p  iAP +vviv+     s +++e   +++ ev +++k +g+ v  D+r++  aG k +  e+ G+p++v +G +++++k i +k r ng+k++++ a+l++
  MMETSP1174-20130828|13210_1 601 TSHNLGQNFGKMFDIKFEDKDKVTRVPWQTSWGL-TTRSIGVMIMVHSDDQGLVLPPRIAPCQVVIVPivsskSGMDPEVIDNYVSEVTKRIKDQGIRVKADNRDNyTAGWKYNYWEMKGVPIRVEIGASEIEKKTILLKLRYNGSKEEVNLADLSD 756
                  5578*********************99999***9.59*****************************983222234666888999********************87368****************************************99888765 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.1e-07   0.00017     191     342 ..     405     561 ..     378     579 .. 0.84
   2 !   40.4   0.0   4.7e-14   3.9e-11     418     561 ..     605     758 ..     568     761 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.1e-07
    TIGR00418 191 pGlvlwlpkGalirklledfvrekllkrgyeevetPiladl.elweisghldkyk.ermfrfkeee...ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifctedQikeEi.knalrliqkvlkkl 342
                  +G  +  p G  + + +++++ ++ +k + e+ + P  +++  l +  +h++ +  e  + +k+ +    + ++++p         + + ++s+rdLPl+l +   v R E +   + + R R+f  +  H+  + +Q  +E+  ++l+l ++v+++l
  MMETSP1174-20130828|13210_1 405 SGCYILRPWGYGVWEQIQKWFDNEIKKLDVENCYFPLFVSKgALEKEENHIEGFApEVAWVTKAGDtdlAEPIAVRPTSETIMYPEYAKWIHSHRDLPLKLNQWNNVVRWEFKYP-TPFLRSREFLWQEGHTAHANEQEADEMvYQILELYKQVYEQL 561
                  688899999***************************9877615677789*****725566666655444566788998888888889999**********************976.6788******************99996157789999999987 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 4.7e-14
    TIGR00418 418 lDfelperfdltyvdedekekrPviiHrailG.sieRfiaiLlEkaagelPlwLaPvQvrvipvsek........hldyakkvaeklkkegirvdvddrne.klgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekv 561
                  l  + ++ fd+++ d+d+  + P     +++  si  +i++  +  +  lP  +aP Qv+++p+  +          +y+++v++++k++girv+ d+r++ + g k    +++ +p+ + +G +E+e++++  + r ++ ke+++l++l +++
  MMETSP1174-20130828|13210_1 605 LGQNFGKMFDIKFEDKDKVTRVPWQTSWGLTTrSIGVMIMVHSDDQGLVLPPRIAPCQVVIVPIVSSksgmdpevIDNYVSEVTKRIKDQGIRVKADNRDNyTAGWKYNYWEMKGVPIRVEIGASEIEKKTILLKLRYNGSKEEVNLADLSDRI 758
                  55677889***************999999865489999999999999999*************964311222221468********************98747899******************************************999987 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.62   5.1e+02      23      80 ..     401     458 ..     392     466 .. 0.77
   2 !   20.9   0.0   2.9e-08   2.4e-05     462     561 ..     651     758 ..     629     762 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.62
    TIGR00389  23 YgGlaglvDygPlGaelknnikkawrkffileeevlevdspiltpeevl.kasGHvdkF 80 
                  Yg ++g + + P G  + ++i+ +w++  i++ +v +   p+++++  l k   H++ F
  MMETSP1174-20130828|13210_1 401 YGDISGCYILRPWGYGVWEQIQ-KWFDNEIKKLDVENCYFPLFVSKGALeKEENHIEGF 458
                  9999999999****99999985.688888888888888888877776663455666666 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 2.9e-08
    TIGR00389 462 vlrlkpkvaPikvlvlplvnke.e.....lkeiakeiakaLrkeeiiikyddsgs..iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsal 561
                   l l+p++aP +v+++p+v+ +       + +   e++k +++++i++k d+ +    G +Y   +  G+p  v i    +e +t+ l+ R + ++  v++ +l + +
  MMETSP1174-20130828|13210_1 651 GLVLPPRIAPCQVVIVPIVSSKsGmdpevIDNYVSEVTKRIKDQGIRVKADNRDNytAGWKYNYWEMKGVPIRVEIGASEIEKKTILLKLRYNGSKEEVNLADLSDRI 758
                  4789**************975424222224566789**************97654449*********************************99999999999998765 PP

>> TIGR00011  YbaK_EbsC: YbaK/EbsC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.3e-07   0.00027       2     104 ..     169     272 ..     168     314 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.3e-07
    TIGR00011   2 navrllekakieyevleyevdekalkgeeaaeklgvdeeevfKTLvleldkkklvvavipvde.eldlkklAkal...gekkvemidlkdaekvtGYvrGGisPlGq 104
                  +a+ ll+k +ie+++  ye+ e + + +e+a+++g  +    + L+++++k++ +++v + ++ + d+k+lAk+l   g+ +++++d+ ++++  G  +G +s l +
  MMETSP1174-20130828|13210_1 169 KAIDLLKKLDIEFKT--YEHAEVK-TVKEQASAVGSLPGVLTRNLLFKDKKHGFFLVVAHESRdTRDTKQLAKLLdlkGKTNLRLCDAVTLDEKLGVNPGSVSYLSI 272
                  69999******9986..5555555.568999**********************88888887652679******9733255578999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.97
# Mc/sec: 1197.43
//
Query:       MMETSP1174-20130828|13215_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 634.67
//
Query:       MMETSP1174-20130828|13217_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|13216_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1174-20130828|13219_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|13211_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.5   0.1       0.13   10.5   0.1    3.7  4  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.0      0.53   2.2e+03      13      20 ..      25      32 ..      23      33 .. 0.52
   2 ?   10.5   0.1   3.2e-05      0.13       5      21 ..      34      50 ..      34      56 .. 0.85
   3 ?   -3.5   0.3      0.91   3.7e+03      16      20 ..      76      80 ..      75      87 .. 0.42
   4 ?    4.7   0.7    0.0023       9.3       6      19 ..     133     147 ..     133     155 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.53
    TIGR01409 13 agaaaglg 20
                 a+a+ag+g
  MMETSP1174-20130828|13211_1 25 ATASAGGG 32
                 45555554 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.2e-05
    TIGR01409  5 dFLkaaaaagaaaglgl 21
                 +F+k  +aag+aa++++
  MMETSP1174-20130828|13211_1 34 SFIKQIGAAGGAAVITV 50
                 6*************975 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.91
    TIGR01409 16 aaglg 20
                 a+g g
  MMETSP1174-20130828|13211_1 76 ALGMG 80
                 34433 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0023
    TIGR01409   6 FLkaa.aaagaaagl 19 
                  FLk+a + +++a+g 
  MMETSP1174-20130828|13211_1 133 FLKFAaGSTAGALGS 147
                  99**97444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 973.04
//
Query:       MMETSP1174-20130828|13220_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   13.3   0.0      0.033   12.3   0.0    1.4  1  TIGR03698 clan_AA_DTGF: clan AA aspartic protease, AF_0612 family


Domain annotation for each model (and alignments):
>> TIGR03698  clan_AA_DTGF: clan AA aspartic protease, AF_0612 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.2e-06     0.033      22      63 ..     264     305 ..     262     317 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.2e-06
    TIGR03698  22 DTGfegfllvpediveklgleeleqrrvvladgrevltdvak 63 
                  DTGf g+  v+ ++v++ + ee + +++++a +r++++d+ k
  MMETSP1174-20130828|13220_1 264 DTGFGGWQTVSVRVVNEQEEEEKRIKSREAAAKRKSELDTRK 305
                  9************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1639.86
//
Query:       MMETSP1174-20130828|13222_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    5.4  12.7        0.2    9.8   0.8    3.0  3  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.1     0.013        53       1      18 [.       3      18 ..       2      26 .. 0.60
   2 ?    9.8   0.8   4.9e-05       0.2      48      69 ..     184     205 ..     168     209 .. 0.87
   3 ?   -2.7   0.0      0.41   1.7e+03      26      41 ..     257     272 ..     255     274 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.013
    TIGR02976  1 msifflaiPlivfvifva 18
                 m++f+++ ++i  +++v+
  MMETSP1174-20130828|13222_1  3 MTMFMIVSAII--AVVVG 18
                 66655555555..44444 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 4.9e-05
    TIGR02976  48 sekakrleeRidtLEriLdees 69 
                  +++a++l++Ri  LE+++ +e+
  MMETSP1174-20130828|13222_1 184 QREAEKLRARISKLEQLVRSEE 205
                  689***************9885 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.41
    TIGR02976  26 yrskrktaaslstddl 41 
                  y+ +rk++++++++  
  MMETSP1174-20130828|13222_1 257 YMWQRKASQGADKKKN 272
                  7789999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|13226_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 532.67
//
Query:       MMETSP1174-20130828|13227_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 507.96
//
Query:       MMETSP1174-20130828|13225_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-07   27.3   0.0    6.7e-07   26.7   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.3e-06   25.1   0.0    3.7e-06   24.5   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0092   13.6   0.0      0.015   12.9   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
      0.013   12.6   0.2      0.028   11.5   0.1    1.5  2  TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   6.5e-10   6.7e-07      99     147 ..     334     381 ..     292     395 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 6.5e-10
    TIGR01934  99 eLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskp 147
                  +Lpf+d sf+ vt   Gl  + + + ++ e++RVlkpgg  ++  fs++
  MMETSP1174-20130828|13225_1 334 HLPFKDDSFHFVTNVAGLAYLIHPRAVIAEMHRVLKPGGVAIV-AFSNR 381
                  7*************************************97654.55544 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.6e-09   3.7e-06     107     148 ..     334     375 ..     313     385 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 3.6e-09
    TIGR02752 107 elpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvv 148
                  +lp++d+sf +vt   gl  +     v+ em+rv+kpgg  +
  MMETSP1174-20130828|13225_1 334 HLPFKDDSFHFVTNVAGLAYLIHPRAVIAEMHRVLKPGGVAI 375
                  69*************************************654 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05     0.015      90     133 ..     334     377 ..     291     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    TIGR02072  90 klplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                  +lp+ ++sf +++  + l  l  +++v+ae++rvlkpgG+++++
  MMETSP1174-20130828|13225_1 334 HLPFKDDSFHFVTNVAGLAYLIHPRAVIAEMHRVLKPGGVAIVA 377
                  89*************************************87654 PP

>> TIGR03148  cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.79   8.1e+02     174     195 ..      49      70 ..      47      86 .. 0.71
   2 ?   11.5   0.1   2.7e-05     0.028     149     177 ..     257     285 ..     244     301 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.79
    TIGR03148 174 nPvlPilflasgvssGiaavll 195
                  nP lP l + ++  s +aa++ 
  MMETSP1174-20130828|13225_1  49 NPRLPHLAVSAARKSSAAAAVY 70 
                  8999999998887776666553 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.7e-05
    TIGR03148 149 lvlavllgaytGfllsalksyPllnnPvl 177
                  + la+l gay  f+lsal +yP l   +l
  MMETSP1174-20130828|13225_1 257 AALAALTGAYRSFFLSALSAYPSLPLAIL 285
                  5699******************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1179.98
//
Query:       MMETSP1174-20130828|13231_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.63
# Mc/sec: 555.19
//
Query:       MMETSP1174-20130828|13229_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   12.5   0.0     0.0076   11.9   0.0    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.9e-06    0.0076     466     526 ..     240     302 ..     233     342 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-06
    TIGR02917 466 slynllgaiylgkk..dlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvl 526
                  ++yn+lg+++ +k   d++ A+e++ +AL++ + +  Al +L +l ++  n   A + + ++ 
  MMETSP1174-20130828|13229_1 240 AVYNYLGYVHRKKDtpDYEAAEEYYTEALQLWSSNCGALEYLTELYVDRSNETYATKTLTQLC 302
                  678999999988864467889999999999999999999999999888888888888777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1482.05
//
Query:       MMETSP1174-20130828|13232_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.3   0.3        1.6    6.5   0.0    2.0  2  TIGR01029 rpsG_bact: ribosomal protein S7


Domain annotation for each model (and alignments):
>> TIGR01029  rpsG_bact: ribosomal protein S7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1    0.0017       6.9       6      46 ..       3      44 ..       1      55 [. 0.74
   2 ?    6.5   0.0    0.0004       1.6      10      50 ..      59      99 ..      50     103 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0017
    TIGR01029  6 ekrkvskdpvyksklvk.klinkvmldGKKslaekivykale 46
                 e  ++++d++ k++ v+  +++k++  G K++ ++++ ++l 
  MMETSP1174-20130828|13232_1  3 ESSNIQEDRKRKDEAVRaTIMQKLIETGEKERLKEMLREMLV 44
                 667888898888777751566888889999988888887765 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0004
    TIGR01029 10 vskdpvyksklvkklinkvmldGKKslaekivykaleklkk 50
                 v   +  +++ v++l+ +++ +G+ ++ eki  ++l++++k
  MMETSP1174-20130828|13232_1 59 VIRSKGLERITVDELVSQITPQGRATVPEKIKVELLQRIRK 99
                 5555666788899************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|13234_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 837.19
//
Query:       MMETSP1174-20130828|13235_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 831.93
//
Query:       MMETSP1174-20130828|13233_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-56  189.2   0.2    2.7e-55  185.6   0.2    1.9  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    4.2e-56  188.3   0.5    1.6e-55  186.4   0.3    1.7  1  TIGR01136 cysKM: cysteine synthases
    2.6e-48  162.6   0.5    5.1e-48  161.6   0.4    1.4  1  TIGR01139 cysK: cysteine synthase A
    4.1e-47  158.9   1.1    1.2e-40  137.7   0.0    2.1  2  TIGR01138 cysM: cysteine synthase B
    4.3e-46  155.2   0.2    1.1e-42  144.0   0.1    2.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.8e-07   27.8   0.1    4.7e-07   27.1   0.1    1.3  1  TIGR00260 thrC: threonine synthase
    8.2e-05   19.2   1.0    0.00019   18.0   0.7    1.5  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
     0.0022   14.9   0.4      0.005   13.7   0.2    1.6  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
     0.0031   14.4   5.0      0.014   12.2   2.9    2.0  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
     0.0044   13.7   0.0     0.0069   13.0   0.0    1.2  1  TIGR03844 cysteate_syn: cysteate synthase
     0.0065   13.1   0.0      0.014   12.0   0.0    1.5  1  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.2   7.4e-58   2.7e-55      18     319 ..      57     394 ..      39     398 .. 0.78

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 7.4e-58
    TIGR01137  18 nkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdt.....liePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPe......syigvakrlekeipga.vildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGsilae.......p..........eelnktektdykveGiGydfiPtvldr.....kvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaee.....elkeddvivvllpdsirnyltkflndeWlkdkg 319
                  n  ++  + ++l k+e++n+G s kdria+ m++ ae+  +l +  t     ++   sGntG  lalv+   Gy ++i+   k s ek+  ++a Ga +  +      d Pe       y+   + l    p+  + ++qy n++n  ah d+tg ei++q+ g ++++v +  tGGti G+++ lke+  +v++v adP+ s la+       p          e + k+     kveG G+  +  +++      + vd+ i+++d ++f+ +r  ++  gllvgGs+G  +vaa  va+e        ++  iv ll d + +yl+k+++d+W++ ++
  MMETSP1174-20130828|13233_1  57 NAANPTSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTNKATgekkvILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAE-SLPSDFPEqlgsetDYMKQEDLLAAAFPDKyYSVNQYGNMDNMDAHCDSTGAEIWAQTGGSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDKSNLAGlmqrrsdPaaaavtlaevERMTKATG-GIKVEGAGKGSLTGIMQCggaclQYVDRSIAVNDFDAFDECRATAA-TGLLVGGSAGLNLVAAKVVAAEcataaPRLDGVTIVTLLCDHGIKYLSKIFDDDWMSAND 394
                  44455778899*****************************9986543334438999*****************************************987653.34444444111111566666777777776625689*************************************************************999776422222222111111110033333333.489*******9999988533334789***************98765.7************9998887774443323467789*********************9875 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   0.3   4.4e-58   1.6e-55      17     296 ..      61     383 ..      48     385 .. 0.88

  Alignments for each domain:
  == domain 1    score: 186.4 bits;  conditional E-value: 4.4e-58
    TIGR01136  17 eelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkk.....gktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlte.......aeegmkgaiekakel.aeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg......................kpgphkiqgigagfiPkild.....eelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklek.....edkkivvilpdagerYLst 296
                  +  ++++l K+E+ nP++S KdRia  m+++Ae+r++l++     +k+i+ a SGNtG +LA+v+   gy+++++  ++ s+E+r+ ++a Ga l l+e       ++ g+++   k ++l a++ p+ky  ++q+ N +N++aH  +tg+Ei+++t g++++fv +  tgGti Gvg++lke++++v++v ++P++s++                           +g  k++g g+g +  i++      + +d+ i+v+d da++  r+ a++ g+lvG S+G +++aa  va + ++     ++ +iv++l+d+g +YLs 
  MMETSP1174-20130828|13233_1  61 PTSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTNkatgeKKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAEslpsdfpEQLGSETDYMKQEDLlAAAFPDKYYSVNQYGNMDNMDAHCDSTGAEIWAQTGGSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDKSNLAG-LmqrrsdpaaaavtlaevermtkATGGIKVEGAGKGSLTGIMQcggacLQYVDRSIAVNDFDAFDECRATAAT-GLLVGGSAGLNLVAAKVVAAECATaaprlDGVTIVTLLCDHGIKYLSK 383
                  556789999***************************99862222135899***********************************************86222222256799998888888615667************************************************************************9833.236799*************999888999*************9844444589******************9998.**************9999998776555557889*************95 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.4   1.4e-50   5.1e-48      18     295 ..      62     383 ..      48     385 .. 0.86

  Alignments for each domain:
  == domain 1    score: 161.6 bits;  conditional E-value: 1.4e-50
    TIGR01139  18 eakaevlvkleslnPsssvkdrialamiedaekegllkk.....gktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdg.......aegmkgaiekaeel.veetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg.....................kpgphkiqGigagfiPkvLd.....kevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle......kdkkivvilpdtgerYlst 295
                    ++++l k+e+lnP++s kdria  m+++ae ++ l++      k+i+ a sGntG +la+v+   gy+++++  ++ s+e+r+ ++a Ga l L ++       + g ++   k e+l +++ p+ky+ ++q+ n  n ++h  +t++ei+ ++ g++ +fv +  tGGti Gvg+ lke ++d++vv ++P +s++                          +g  k+ G g g +  +++      + +d+ i+v+d +a++ +r  a+  G+lvG s+G +++aa  va + +      ++ +iv++l+d+g +Yls 
  MMETSP1174-20130828|13233_1  62 TSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTNkatgeKKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAESlpsdfpeQLGSETDYMKQEDLlAAAFPDKYYSVNQYGNMDNMDAHCDSTGAEIWAQTGGSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDKSNLAGLMqrrsdpaaaavtlaevermtkATGGIKVEGAGKGSLTGIMQcggacLQYVDRSIAVNDFDAFDECRATAAT-GLLVGGSAGLNLVAAKVVAAECAtaaprlDGVTIVTLLCDHGIKYLSK 383
                  45778899*************************99997622221358999**********************************************97533333225677777777777615678************************************************************************9854335589**************99888999***********9998444445789*****************9998.*********999999888776442111245789*************95 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   3.2e-43   1.2e-40      18     207 ..      60     263 ..      43     284 .. 0.83
   2 !   20.1   0.1   2.2e-07   8.2e-05     223     287 ..     313     383 ..     302     385 .. 0.89

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 3.2e-43
    TIGR01138  18 lpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeik.....eGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdke.....e..GmeGardlare...lvrkgeek..lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieGl 207
                  +p ++  +l k e  np+ s kdr a  m+ +ae r e+      e +v++ a+sGntG +la+v++l Gy+v ++  +  s e+++ ++a Ga l l + +     e  G e   d++++   l+   ++k   ++q+ n dn++ah  stG eiw qt+G++thfv s  t+Gti Gv++ lke+  +v++v   p + s++ Gl
  MMETSP1174-20130828|13233_1  60 NPTSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTnkatgEKKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAESLpsdfpEqlGSET--DYMKQedlLAAAFPDKyySVNQYGNMDNMDAHCDSTGAEIWAQTGGSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDK-SNLAGL 263
                  5667888999**************************998623322458999***********************************************9864222222124444..433322337889999955589*********************************************************999976.455565 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 2.2e-07
    TIGR01138 223 lvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.......avvvaiicdrGdrylst 287
                  +vdr + v+  da d  r  a   g++vG s+G  ++aa  +a e +          +v+++cd G +yls 
  MMETSP1174-20130828|13233_1 313 YVDRSIAVNDFDAFDECRATAA-TGLLVGGSAGLNLVAAKVVAAECATaaprldgVTIVTLLCDHGIKYLSK 383
                  79****************9886.69*********999999999998877778885569************85 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.1     3e-45   1.1e-42      16     304 .]      59     390 ..      49     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: 144.0 bits;  conditional E-value: 3e-45
    TIGR03945  16 lfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.....ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekde.tggyLkaRlarvre...llaeip.davwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifggepgk..............R........lipGlGasvvpelld.....eslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieeg......stvvailpDrGerYldtvYddeWv 304
                    ++++++l  K+E lnp+ S Kdr A+ +l++a+++ e++++     ++i+  sSGn + +La v + +G+++++++ +k+s +++ ++ra ga++ + e+  +   + L++  +++++   l+a  p +++ +NQY+n++n++ah  +t++ei ++   +v +++++ st+Gt++Gv + l+e++++v+vv  D   S + g  +++              R        ++ G G +    +++      + +d+ + v++ +++  cr  +++ g+l+GgS+G  ++a+k ++a++++        t+v++l+D+G +Yl+ ++dd+W+
  MMETSP1174-20130828|13233_1  59 ANPTSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTNKatgekKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAESLPSdFPEQLGSETDYMKQedlLAAAFPdKYYSVNQYGNMDNMDAHCDSTGAEIWAQTGgSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDKSNLAGLMQRRsdpaaaavtlaeveRmtkatggiKVEGAGKGSLTGIMQcggacLQYVDRSIAVNDFDAFDECRATAAT-GLLVGGSAGLNLVAAKVVAAECATAaprldgVTIVTLLCDHGIKYLSKIFDDDWM 390
                  4577899******************************999864333337899**********************************************9998765478999999888876454555555157789************************99*********************************99877765553322211122222222222311222222578889888888877222224789****************99988.***********9999999888443323344589*********************6 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   1.3e-09   4.7e-07      15     103 ..      42     135 ..      33     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.3e-09
    TIGR00260  15 lvdlaegstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne......tvlcAtsGdtgaaaaealagkanvkvvvL 103
                  +vdl +   +l+++ + a++  + +l  k + ++P ++ KDr  + + +  ++  el+n+      ++l A+sG+tg ++a       + +vv++
  MMETSP1174-20130828|13233_1  42 MVDLTASCPALVQAYNAANPTSQIRLLGKCEHLNPGMSHKDRIAKVMLQRAEARDELTNKatgekkVILAASSGNTGCSLA-LVGTLMGYEVVII 135
                  566666666666766666666667889999******************999999999999999999***************.7777889998887 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.7     5e-07   0.00019      33     253 ..      66     321 ..      43     335 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5e-07
    TIGR01124  33 rvllkredlqpvfsfklrGaynkmaqlsa..e..qkakG....viaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhG...enydeakakalelaqekgl.t..f......iapfddplvi.aGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaa...l.kqaleaGervkldqvGlf...adGvavkevGdetfr.......lckeylddivlvd 253
                  r+l k e l+p +s k r a  ++ +  a  e  +ka+G    ++aas+Gn    +al ++ +G + vi+  +  +  k   ++a G+ + l     +++ e     ++  ++++l +  f      ++ + + + + a   + + e+  q+  ++++  ++   GG i Gv   +k+ + ++ v+  +++ s+    + +++  a   v+l +v  +   + G+ v   G+ +++        c +y+d  + v+
  MMETSP1174-20130828|13233_1  66 RLLGKCEHLNPGMSHKDRIAKVMLQRAEArdEltNKATGekkvILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAEslpSDFPEQLGSETDYMKQEDLlAaaFpdkyysVNQYGNMDNMdAHCDSTGAEIWAQTGGSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDKSNLaglMqRRSDPAAAAVTLAEVERMtkaTGGIKVEGAGKGSLTgimqcggACLQYVDRSIAVN 321
                  5666888888888888888888876543311222455555554889********************************************99862224676666666666555555132221111224455444433266678899*******8887766666689***********************9998632224234555777788877765511145667777666554322222224677777777775 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   1.3e-05     0.005      45     185 ..     103     257 ..      62     324 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-05
    TIGR01127  45 eekkrGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhG...adfDeayklaeelaeeegrvfvhafdDefviaGq.G..........tlgleiledlp.dvdtvivPvGGGGLisGvasavkklnpevkviGveaea 185
                   ++k+ ++aas+Gn     al    +g + +i+    + ++k + +++ Ga   L     +df e     +++ ++e+  +  af D++    q G            g ei ++++  v   ++    GG i Gv   +k+   +v v+  + ++
  MMETSP1174-20130828|13233_1 103 TGEKKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAEslpSDFPEQLGSETDYMKQED-LLAAAFPDKYYSVNQyGnmdnmdahcdSTGAEIWAQTGgSVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLADPDK 257
                  34567799*********************************************9986222567777777777776665.56788999876443323111111111145788887764267777777778999999999999999999997655443 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.9   3.8e-05     0.014      62     201 ..     101     254 ..      62     301 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.8e-05
    TIGR02991  62 sdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqdd....aqeeverlvkerGlvmlpp........fdhad.ivaGqGtlglevveqvpd.lalvlvplsGGGlasGvavavkalkpatrviGvs 201
                  +++  ++ ++aas+Gn G +la   +  g ++vi   +   ++k  +ir  Ga + +      d       e + + +e+ l++  p        + + d + a   + g e+ +q    +   ++  s GG + Gv+ ++k ++ +++v+   
  MMETSP1174-20130828|13233_1 101 KATGEKKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATLWLAESLPSDfpeqLGSETDYMKQEDLLAAAFPdkyysvnqYGNMDnMDAHCDSTGAEIWAQTGGsVTHFVMSGSTGGTIQGVGKCLKERRADVEVVLAD 254
                  4555667799********************************************9887654444110033466666666555544331221111144443133556678999999987515555667788999999999999999999998554 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.9e-05    0.0069     104     150 ..      93     139 ..      80     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.9e-05
    TIGR03844 104 ealptlqrlkekgkkvlvvasaGntgrafaevsaltgkpvvlvvPes 150
                  ea   l      +kkv+  as+Gntg ++a v +l+g++vv++  ++
  MMETSP1174-20130828|13233_1  93 EARDELTNKATGEKKVILAASSGNTGCSLALVGTLMGYEVVIITNAK 139
                  666666666677899**************************997654 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.8e-05     0.014     152     201 ..     106     155 ..      84     174 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.8e-05
    TIGR02035 152 rykiavGstGnlGlsiGiisaalGfkvtvhmsadakkwkkdklrskGvtv 201
                  +  i   s+Gn G s+ ++++ +G++v++   a     k+  +r++G t+
  MMETSP1174-20130828|13233_1 106 KKVILAASSGNTGCSLALVGTLMGYEVVIITNAKCSMEKRTHIRANGATL 155
                  5667889****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:01.19
# Mc/sec: 442.55
//
Query:       MMETSP1174-20130828|13237_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 975.78
//
Query:       MMETSP1174-20130828|13241_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 681.06
//
Query:       MMETSP1174-20130828|13238_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1174-20130828|13240_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.84
# Mc/sec: 163.42
//
Query:       MMETSP1174-20130828|13243_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1174-20130828|13242_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1560.91
//
Query:       MMETSP1174-20130828|13250_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 248.45
//
Query:       MMETSP1174-20130828|13248_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.59
# Mc/sec: 785.22
//
Query:       MMETSP1174-20130828|13252_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 952.90
//
Query:       MMETSP1174-20130828|13253_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1174-20130828|13254_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 547.37
//
Query:       MMETSP1174-20130828|13256_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 482.70
//
Query:       MMETSP1174-20130828|13257_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 1037.50
//
Query:       MMETSP1174-20130828|13258_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 826.25
//
Query:       MMETSP1174-20130828|13259_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 531.34
//
Query:       MMETSP1174-20130828|13260_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 580.75
//
Query:       MMETSP1174-20130828|13262_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.43
# Mc/sec: 165.75
//
Query:       MMETSP1174-20130828|13263_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 216.60
//
Query:       MMETSP1174-20130828|13264_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|13265_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.43
# Mc/sec: 98.22
//
Query:       MMETSP1174-20130828|13266_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|13267_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 644.42
//
Query:       MMETSP1174-20130828|13269_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   14.3   3.4     0.0081   14.0   2.3    1.1  1  TIGR02338 gimC_beta: prefoldin, beta subunit


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.3     2e-06    0.0081      64     106 ..      26      68 ..      21      70 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-06
    TIGR02338  64 dkeevleeLeekketlelrvktlekQeerlrekleelqekiqe 106
                  +k+ v+++L+e +e+lel++  l++      +k+ +lqe++ e
  MMETSP1174-20130828|13269_1  26 EKDLVIQDLKETVEILELKISKLDQLVRVKDAKIGKLQEALSE 68 
                  6999********************88888889******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.47
# Mc/sec: 199.39
//
Query:       MMETSP1174-20130828|13270_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 393.61
//
Query:       MMETSP1174-20130828|13271_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 720.28
//
Query:       MMETSP1174-20130828|13275_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.69
# Mc/sec: 208.50
//
Query:       MMETSP1174-20130828|13278_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|13283_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00038   18.9   0.0    0.00052   18.5   0.0    1.2  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0014   16.1   0.0      0.067   10.5   0.0    1.9  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0016   14.5   0.0     0.0017   14.5   0.0    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0043   14.4   0.0       0.24    8.7   0.0    2.0  1  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO
  ------ inclusion threshold ------
      0.037    9.7   0.0       0.11    8.1   0.0    1.7  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.3e-07   0.00052      16      78 ..       4      70 ..       1      76 [. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.3e-07
    TIGR02795 16 gdYakAeqaFkaFlkkYPkstlapnA....qYwlGealyakkkykdAakaflevvkkypksekapda 78
                 g++++A++ F++ l+ +P+s+   +A     Y +G  l+++   ++A + f+ v++++p++e a+  
  MMETSP1174-20130828|13283_1  4 GKFTEAQDCFERILRLNPDSDEIREAlvvtLYNIGVELLNEDRGEEACDWFERVLEHDPNHESAASD 70
                 7888888888888888888888888744444888888888888888888888888888888877755 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0059       4.9     149     175 ..       4      30 ..       1      35 [. 0.75
   2 !   10.5   0.0   8.2e-05     0.067     137     182 ..      33      78 ..      30      79 .] 0.93

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0059
    TIGR02521 149 gdtekaekyltralkidpkrpesllel 175
                  g++ +a+  ++r l+++p++ e   +l
  MMETSP1174-20130828|13283_1   4 GKFTEAQDCFERILRLNPDSDEIREAL 30 
                  677888888888888888887766666 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.2e-05
    TIGR02521 137 syeNaglcalkagdtekaekyltralkidpkrpesllelaelklkk 182
                  ++ N+g+ +l++ + e+a   ++r l+ dp+   +  +++  ++++
  MMETSP1174-20130828|13283_1  33 TLYNIGVELLNEDRGEEACDWFERVLEHDPNHESAASDIVSAQYNQ 78 
                  678********************************99999999876 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-06    0.0017     173     239 ..       9      75 ..       2      79 .] 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-06
    TIGR03939 173 alaaiqqalrlePdnkellkelveiltrlgapalaarlakqhpelftdeekrrleldqaaelvrlge 239
                  a  + +++lrl+Pd+ e+  +lv +l ++g   l ++  +++ ++f+ + +++ +++ aa+ +  ++
  MMETSP1174-20130828|13283_1   9 AQDCFERILRLNPDSDEIREALVVTLYNIGVELLNEDRGEEACDWFERVLEHDPNHESAASDIVSAQ 75 
                  5567899****************************************************98776655 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00029      0.24      34      71 ..      32      69 ..      24      79 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00029
    TIGR03302 34 eelYeeaeeelekgnykeAikkfeelesrypfseyaeq 71
                  +lY+ + e l++ + +eA + fe++ ++ p  e a+ 
  MMETSP1174-20130828|13283_1 32 VTLYNIGVELLNEDRGEEACDWFERVLEHDPNHESAAS 69
                 589***********************999998876654 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00014      0.11     347     396 ..       8      64 ..       2      78 .. 0.29

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00014
    TIGR02917 347 eaiatlspalekdsddsallsll.......GeayLekgdfekAaeylakaseldPen 396
                  ea+   +++l++++d+ ++++ l       G ++L++   e+A   ++++ e dP+ 
  MMETSP1174-20130828|13283_1   8 EAQDCFERILRLNPDSDEIREALvvtlyniGVELLNEDRGEEACDWFERVLEHDPNH 64 
                  222222222222222222211111111111222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 297.92
//
Query:       MMETSP1174-20130828|13281_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.5   0.9      0.021   12.5   0.6    1.6  1  TIGR00779 cad: cadmium resistance transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00779  cad: cadmium resistance transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   5.2e-06     0.021     128     177 ..     151     201 ..     143     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.2e-06
    TIGR00779 128 llltvivflilvavlvfvayrlaalkfiseivekyer.wivaivfiglGiy 177
                  l++ v+v+++ + +++++++r   ++f+ ++v k++  +  +  f glG++
  MMETSP1174-20130828|13281_1 151 LFVSVVVYFLWIDLWAYIGHRALHVPFLYKTVHKWHHvYKQPTAFSGLGLH 201
                  899*******************************97636789999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 771.23
//
Query:       MMETSP1174-20130828|13280_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-20   68.9  13.0    2.8e-05   20.2   0.1    7.5  6  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   5.3e-06     0.022     132     160 ..     199     227 ..     189     234 .. 0.91
   2 !   15.3   0.0     2e-07   0.00083     129     204 ..     262     356 ..     229     359 .. 0.71
   3 !   14.1   0.0   4.7e-07    0.0019     103     202 ..     335     453 ..     325     459 .. 0.63
   4 !   20.2   0.1   6.8e-09   2.8e-05      15     156 ..     427     577 ..     419     582 .. 0.79
   5 !    0.4   0.0    0.0067        27     130     162 ..     654     686 ..     645     693 .. 0.87
   6 !    5.6   1.9   0.00018      0.74      36     156 ..     708     814 ..     658     823 .. 0.51

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.3e-06
    TIGR00870 132 italilAihkqnyeivklLlekgasvear 160
                   tali A+    + ivklL+ +ga+v+ar
  MMETSP1174-20130828|13280_1 199 LTALIAAASSGHLDIVKLLITSGADVNAR 227
                  69*************************97 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2e-07
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve......arakgdefv............ksqekdslyh...gespLnlaaclasesivsllsedpAdi 204
                    g tal lA+ +    iv  Ll+kga+v+      ++a  +++v            k  + d+      g s +  aa  +s ++vs+l+e++A++
  MMETSP1174-20130828|13280_1 262 ASGVTALWLAAGEGRTDIVDFLLNKGADVNnkridgITALMAACVggylesvkllltK--GADVEAVdqdGLSAIMNAAENGSTAVVSYLIEHGASP 356
                  5789999999999999999999999999999999995555555555555688888652..3333333001444555567778899999999999876 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 4.7e-07
    TIGR00870 103 lllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve............arakgd....efvksqekds.lyh..gespLnlaaclasesivsllsedpA 202
                  ++  ++     +++     ++ ++  t g t+li+A     + +vklL+ekga+v             a+a g+    ef+  q+ d+ + h  g s L  aa  ++ s+v+ l+ ++A
  MMETSP1174-20130828|13280_1 335 MNAAENGSTAVVSYLIEHGASPSNMSTTGFTPLIVASAGGHLGVVKLLIEKGAQVDvmhpegvnalmyAAAGGHddvvEFLIGQGADVnALHsnGGSALMEAATAGNVSVVEKLLAHGA 453
                  5555544444444444555566677899***************************9877777777775555553222245555555542233113456666666666666666666665 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 6.8e-09
    TIGR00870  15 seeekaflkaiergdlalvkrkleeaklveklnincvdrlgrsallsaaieneneelteLllkke......egevGdalLhaiskelvdaveailllllkaarksltls.........elandestseftkgitalilAihkqnyeivklLlekgas 156
                  s++  a+++a++ g++ +v + l+  +   +  i+  d+ + +al+saa++  ++++  Ll +++       ++ G al++a+  +   ++e ++++ ++ ++  +++               e+ +    g t l++A+    + +vklLle+ a+
  MMETSP1174-20130828|13280_1 427 SNGGSALMEAATAGNVSVVEKLLAHGA---SATIK--DKDQVTALMSAASQ-GHLDVSTLLIEQNvevdavAASGGSALMFAAGAGHLSVCELLIRHGADVNKLVVATPeyiehvteaIAKGSEDVEPHKDGVTSLHVAALGGHLDVVKLLLENNAD 577
                  566778889999999999999999855...45566..66677899955555.578899999999989*9999999999**********************997765554788888542222234445566799*********************997 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.0067
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvearak 162
                  +  t li A+hk +  +v++++e+ a++e+ a 
  MMETSP1174-20130828|13280_1 654 HNVTVLIQAAHKGQKDVVEAMIERQAEIEVGAA 686
                  66799************************8775 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.00018
    TIGR00870  36 kleeaklveklnincvdrlgrsallsaaieneneelteLllkke....egevGdalLhaiskelvdaveailllllkaarksltls........elandestseftkgitalilAihkqnyeivklLlekgas 156
                  +l+ +   +  +in +d+ g +al+ aa+++  + ++eLl+++     +   G ++L+ + +                                    + +++++    t +i  + +    iv++Ll kga+
  MMETSP1174-20130828|13280_1 708 MLTQK---TDTDINAQDKDGTNALMAAAVRGHDKVVVELLEQNAgvnaQNVDGHTALMFAYN-----------------------GrnqvasllDKYSEFMKDSENDNSTQIIRNALETHSSIVEILLSKGAD 814
                  22221...234455555556666666666666666666665555555555555555555555.......................044444433333345555555566666666666677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:00.52
# Mc/sec: 2200.66
//
Query:       MMETSP1174-20130828|13285_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.9   0.0      0.042   10.4   0.0    1.1  1  TIGR03948 butyr_acet_CoA: butyryl-CoA:acetate CoA-transferase


Domain annotation for each model (and alignments):
>> TIGR03948  butyr_acet_CoA: butyryl-CoA:acetate CoA-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     1e-05     0.042     337     399 ..      70     134 ..      66     145 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
    TIGR03948 337 isgaggqldfv...lgaylskggksficlsstfkdkdgqlksrirptleegsivtdtranvhyvvt 399
                  + gagg  +     l a   +gg+ + c ss+f+ ++  ++      l +g ++t+tr  +   +t
  MMETSP1174-20130828|13285_1  70 VRGAGGHWEVCldmLTASSENGGRPYECWSSAFTIRSIAMQLA-SFLLVDGEVITETRGTAAEAIT 134
                  679999887751115677889**************99888754.56799*********88766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1247.51
//
Query:       MMETSP1174-20130828|13287_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1110.06
//
Query:       MMETSP1174-20130828|13286_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1419.88
//
Query:       MMETSP1174-20130828|13290_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1174-20130828|13291_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|13293_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|13288_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-54  182.3   0.0    3.4e-54  182.1   0.0    1.0  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    7.9e-36  121.6   0.0    3.2e-34  116.3   0.0    2.0  2  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    2.4e-12   44.3   0.0    3.3e-12   43.8   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.1e-09   35.4   0.0    1.6e-09   34.9   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    3.6e-06   24.1   0.0    5.8e-06   23.4   0.0    1.3  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.0   4.2e-57   3.4e-54     108     411 .]      38     354 .]       7     354 .] 0.84

  Alignments for each domain:
  == domain 1    score: 182.1 bits;  conditional E-value: 4.2e-57
    TIGR03224 108 kvseveeveaaqkgstlapwsa.akpyvnlyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilppgtdekgkphylrqysvasprdgerprynnlaltvkrvte.....dhegnavrgvasnylcdlkkgdkvqvigpfgstflmpn.hpessilmictgtgsapmramterrrrrrakg...eggklllffgartkeelpyfgplqklpk...dfidinfafsrtpeep...kryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                  ++++v++ ++ q     +p+s  +   vn y ak+p    v    r+   +a  ++  iv+d g   +p  egqs g++ppg +++gkp  +r ys+as r g+  + n  +l v+r t        ++ a +gv+sn+lcd k gd+++++gp g  +l+p+  pe++i+m+ tgtg ap r++  r+  + +     + g   lf+g  + + l y    q++ k   d   +++a+sr+  +    k y+qd + e a+++++ l+ +++++y cglkgm  g+ e l+ v++++  d+e+    l+++g+ h+e y
  MMETSP1174-20130828|13288_1  38 RATSVSSAVK-QDFLESSPYSDmSTIPVNTYKAKTPFIGKVKSVKRIVGPEATGETCDIVIDHGGD-MPYWEGQSFGVIPPGVKANGKPQSVRLYSIASSRYGDDMTGNTGTLCVRRATYwcpelKADDPAKKGVCSNFLCDAKPGDEMKMTGPSGKVMLLPEsNPETDIIMVATGTGIAPYRSFIRRMFTEETPYgadFKGLAWLFLGVANSDALLYDDEWQTVLKenpDNFRLDYALSREATNSkggKMYIQDKVEEYADEIFERLE-KGAHMYFCGLKGMMPGIQEMLASVCASKDIDYEEFIKGLKKNGQWHVEVY 354
                  4444442222.23334567775145569***********************************985.799***********************************************985333225788899******************************7369******************99888766543223489999**************888777766233556789*****9876522278***************996.689*********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0055       4.5     219     278 ..      57     115 ..      38     122 .. 0.83
   2 !  116.3   0.0   3.9e-37   3.2e-34     380     597 .]     124     354 .]     118     354 .] 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0055
    TIGR01931 219 saelqveeseyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvwy 278
                  s  +++  ++y  k Pf ++v + ++i g +++ ++  i +d  + ++ y  G + Gv +
  MMETSP1174-20130828|13288_1  57 SDMSTIPVNTYKAKTPFIGKVKSVKRIVGPEATGETCDIVIDH-GGDMPYWEGQSFGVIP 115
                  5556666899*******************************95.679**********975 PP

  == domain 2    score: 116.3 bits;  conditional E-value: 3.9e-37
    TIGR01931 380 pltprLYsiassq...kevddevhltvgvvkk.....eaegrarlGgasgflaerlkeddtvkvyveenenfrlPe.dkdtpiimigpGtGvaPfraflqereee....ga..eGknWlffGnphfaeDfLYqveWqkylkkg.vltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrkekrYqrDvY 597
                  p + rLYsiass+      ++   l v  +++     +a+  a++G++s+fl++ +k++d++k+   + +   lPe +++t+iim+++GtG+aP+r+f+++   e    ga  +G +Wlf G  + ++  LY  eWq  lk++    +ld a sr+  +    k+Y+qd++ e ++e+fe l++Gah+Y CG  k m   ++++L  v a++ ++d    ee+++ l+k+ +++ +vY
  MMETSP1174-20130828|13288_1 124 PQSVRLYSIASSRygdDMTGNTGTLCVRRATYwcpelKADDPAKKGVCSNFLCD-AKPGDEMKMTGPSGKVMLLPEsNPETDIIMVATGTGIAPYRSFIRRMFTEetpyGAdfKGLAWLFLGVAN-SDALLYDDEWQTVLKENpDNFRLDYALSREATNskggKMYIQDKVEEYADEIFERLEKGAHMYFCG-LKGMMPGIQEMLASVCASK-DIDY---EEFIKGLKKNGQWHVEVY 354
                  5678********8332345677789999988744444678899***********.9*******************7589*******************987544311223433799******998.5679***********873678********976555559****************************.8889999****99998765.3444...579999999999888888 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   4.1e-15   3.3e-12     203     392 ..     124     329 ..     109     339 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 4.1e-15
    TIGR01941 203 eetvrayslan..ypeek..giiklnvriat..ppfa..naeippGkmssyifslkpGdkvtvsGpfGeffv...kdtdaelvfigGGaGmaplrshildllkrlk...skrk..isfwyGarskrevfyeedfdeleaen.dnfkyhvalsdplpednwtGytgfihnvlyenylkdhdape.diefymcGpplmnaaviklledlG 392
                   ++vr ys+a+  y +++  ++ +l vr at   p    +   + G++s ++ + kpGd + ++Gp G++ +    + ++++++++ G+G+ap rs i  ++ +     ++ k    ++ G       +y+++++++ +en dnf+   als      n +G   +i + + e   + ++  e   + y cG   m   + ++l ++ 
  MMETSP1174-20130828|13288_1 124 PQSVRLYSIASsrYGDDMtgNTGTLCVRRATywCPELkaDDPAKKGVCSNFLCDAKPGDEMKMTGPSGKVMLlpeSNPETDIIMVATGTGIAPYRSFIRRMFTEETpygADFKglAWLFLGVANSDALLYDDEWQTVLKENpDNFRLDYALSREA--TNSKGGKMYIQDKVEEYADEIFERLEkGAHMYFCGLKGMMPGIQEMLASVC 329
                  578999999975587775336789******944354423344789************************987333456889*****************99998764222233311334579999999********998887469********765..567787888888776655555565551467899**9999999999998765 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     2e-12   1.6e-09      75     243 ..     169     341 ..     162     352 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2e-12
    TIGR02160  75 GlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaep......kstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldsli.evdevdeaflcGPaalvddaedalkalGvdsekvhlelftt 243
                  G+ s+++ +  ++Gd + +  P G+    ++++ +   ++va+G+Gi+P  + ++ ++++e       k    l+ +  +s+ +++ +e + +    p  f+l   lsre  +++  +  + ++k++++ d++  ++++  ++++cG ++++  +++ l ++  +s+ + +e f  
  MMETSP1174-20130828|13288_1 169 GVCSNFLCD-AKPGDEMKMTGPSGKVMLLPESNPETDIIMVATGTGIAPYRSFIRRMFTEETpygadfKGLAWLFLGVANSDALLYDDEWQTVLKENPDNFRLDYALSREATNSKGGKMYI-QDKVEEYADEIFeRLEKGAHMYFCGLKGMMPGIQEMLASV-CASKDIDYEEFIK 341
                  788888887.59*****************99999*******************99888776423111144556999****************9999***************9998655555.679******998358999****************999766.6788999999976 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     7e-09   5.8e-06      66     156 ..     168     264 ..     165     319 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7e-09
    TIGR02911  66 vgkvtdevfelkegdklflrgpygngfdv.dnykdkelvvvaggtgvapvkgvve.yfakns...kevkeld.livgfktredilfkedlaewkeki 156
                   g+ ++ + + k gd++ + gp g  + + ++  + ++++va gtg+ap +  ++  f++++    + k l  l +g  + +++l+ ++ ++  ++ 
  MMETSP1174-20130828|13288_1 168 KGVCSNFLCDAKPGDEMKMTGPSGKVMLLpESNPETDIIMVATGTGIAPYRSFIRrMFTEETpygADFKGLAwLFLGVANSDALLYDDEWQTVLKEN 264
                  5788889999***************998835667899**************9986268887622246676654779***********9988754433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 994.13
//
Query:       MMETSP1174-20130828|13292_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1174-20130828|13296_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 798.22
//
Query:       MMETSP1174-20130828|13297_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.3    4.3  12.0        9.1    4.0   8.3    1.1  1  TIGR03979 His_Ser_Rich: His-Xaa-Ser repeat protein HxsA


Domain annotation for each model (and alignments):
>> TIGR03979  His_Ser_Rich: His-Xaa-Ser repeat protein HxsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.3    0.0022       9.1      72     106 ..      46      79 ..      43      81 .] 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0022
    TIGR03979  72 hySgsGGgyvvrskdtstysapvpsksyspssgsl 106
                  h  g+G   +++s ++st+s p ps+ +spss+++
  MMETSP1174-20130828|13297_1  46 HLRGTG-KAASPSTPSSTPSSPSPSSPSSPSSSPS 79 
                  777888.999***************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|13295_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.69
# Mc/sec: 780.46
//
Query:       MMETSP1174-20130828|13300_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.83
# Mc/sec: 203.55
//
Query:       MMETSP1174-20130828|13301_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 812.77
//
Query:       MMETSP1174-20130828|13306_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   19.2   0.0    0.00036   18.1   0.0    1.5  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00031   17.9   0.4     0.0019   15.3   0.2    1.9  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00073   16.8   0.3     0.0053   14.0   0.1    2.0  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-07   0.00036      17      49 ..      16      48 ..       3      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.6e-07
    TIGR00537 17 elknddvleiGaGtGlvairlkekgkkivatdi 49
                 + +++ vle+GaG Glv++ +++ g+ +vatd 
  MMETSP1174-20130828|13306_1 16 QFEGQSVLELGAGCGLVSMVVRDLGAHVVATDK 48
                 678999*************************95 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.4e-06    0.0019      45     152 ..      14     133 ..       3     150 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.4e-06
    TIGR01983  45 ekkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk...........kieyelks..veelaeeekesfDvvlamEvlEHvadleeilkecaellkpg.gilfls 152
                  ++++eg +vl++G+G Gl+s  +  lga+v++ D ++ l  + +   + +  +           ++ey  ++  v e +e  +  fDvv++ + l   a++e ++  +  ++ pg   +++s
  MMETSP1174-20130828|13306_1  14 RSQFEGQSVLELGAGCGLVSMVVRDLGAHVVATDKASIL-PILERNLEGNAGRgdggggggscvALEYDWAAsgVPEGVEL-RMPFDVVICADCLYAQASVEPLMAILELVVDPGrTLVVVS 133
                  47899*****************************86532.22222222221112244455555545554433114444444.4557777777777777777666666666666663334444 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.9e-06    0.0053      52      86 ..      16      50 ..       5      63 .. 0.89
   2 ?    0.7   0.0     0.045        61     118     141 ..      96     117 ..      89     146 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-06
    TIGR02021 52 slkGkkvlDAGCGtGllsielAkrGaivkavDise 86
                 + +G+ vl+ G G Gl+s+ + + Ga+v+a D + 
  MMETSP1174-20130828|13306_1 16 QFEGQSVLELGAGCGLVSMVVRDLGAHVVATDKAS 50
                 578****************************9765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.045
    TIGR02021 118 kfDavvalDvlihYpaediakale 141
                   fD+v++ D l  Y+++ ++ +++
  MMETSP1174-20130828|13306_1  96 PFDVVICADCL--YAQASVEPLMA 117
                  59*******98..66665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 646.05
//
Query:       MMETSP1174-20130828|13307_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-36  122.1   0.0    3.3e-23   80.3   0.0    2.1  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    5.3e-15   53.3   0.0    2.8e-14   51.0   0.0    1.9  1  TIGR00678 holB: DNA polymerase III, delta' subunit
    6.4e-09   32.7   0.0    3.6e-08   30.2   0.0    2.0  2  TIGR00602 rad24: checkpoint protein rad24
    3.1e-08   30.5   0.0    5.7e-08   29.6   0.0    1.4  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
    1.7e-06   24.7   0.0    1.5e-05   21.5   0.0    2.0  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      2e-05   21.2   0.0    3.4e-05   20.4   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.1e-05   21.4   0.0    0.00064   16.5   0.0    2.7  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      7e-05   19.4   0.0    0.00011   18.7   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein
    0.00012   19.1   0.0    0.00035   17.5   0.0    1.7  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00015   18.0   0.0    0.00024   17.3   0.0    1.3  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0028   14.6   0.0     0.0056   13.6   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0045   14.4   0.0      0.008   13.5   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0047   13.5   0.9      0.085    9.3   0.0    2.1  2  TIGR03689 pup_AAA: proteasome ATPase
     0.0083   13.5   0.2      0.072   10.4   0.0    2.4  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
  ------ inclusion threshold ------
      0.011   12.2   0.0      0.019   11.4   0.0    1.3  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
      0.014   11.7   0.0       0.02   11.2   0.0    1.3  1  TIGR00376 TIGR00376: putative DNA helicase
      0.026   11.8   0.0       0.45    7.7   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC


Domain annotation for each model (and alignments):
>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.8e-13   6.6e-11       6      60 ..      22      75 ..      18      82 .. 0.92
   2 !   80.3   0.0   1.4e-25   3.3e-23      87     304 ..      84     314 ..      78     344 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.8e-13
    TIGR02397  6 rkyrPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAkal 60
                  kyrPk+ +d+  qe vv+tL+ ai+++ + h  Lf+Gp G+GKTs+   lA++l
  MMETSP1174-20130828|13307_1 22 EKYRPKKVTDVSSQEEVVRTLQSAIEHGCLPH-LLFYGPPGTGKTSTVLALAHTL 75
                 7*****************************99.69************99999876 PP

  == domain 2    score: 80.3 bits;  conditional E-value: 1.4e-25
    TIGR02397  87 dviEiDaAsnngvddirellenvkya....psksk.....ykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskg..kitlekveellglvseekllelleailkkdleealkllee.llekgvdleklledliellrdlllvkktk.selleve 304
                   v+E++a  ++g+  +re +++   a     s+s+     +k+ i+DE+  ++ +a  aL +t+E   +   F l+   +++i+e + SRc +++fk ++ e + erlk i+++e++++ e+  e+i + + G lR a++ll+    ++    +++ e v+e+ g++s++ + el +ai ++  +++ +++e+ ++ +g+    ++e+li  + +l+ +++++  ++ ++ 
  MMETSP1174-20130828|13307_1  84 RVLEMNASDERGIKVVREKIKTFAQAsigkSSNSEfpcppFKMIILDEADSMTGDAQAALRRTIETYSKTTRFCLICNYVSRIIEPLASRCAKYRFKALPVECMLERLKFISEQESLECPEDVYEKILELSGGDLRRAVTLLQSTFNFCGLsaSMSPEVVTEVAGALSSNVMDELWAAIRSNSFDQLESVVEDsIVLAGFAAPLVIEQLIVDMAKLTDLTNAQkGKVAQTL 314
                  68899999999998888766654333011033333344448********************************************************************************************************99986545899*******************************99997527789999999999999888888777777632333322 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.2e-16   2.8e-14       3     187 ..      41     220 ..      39     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 1.2e-16
    TIGR00678   3 alkralekgrlahAlLfaGpeGvGkealaealakallCekeeeeeacgeckscrrieagnHPDllvlepegqkikvdqvreleeelsktplesgrrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee......eaaeallalaggsper 187
                   l++a+e+g l+h lLf+Gp+G+Gk+++++ala++l               s +r+ + n  D + ++   +kik+ +  ++ ++ + +    + +++i+++a++++  a+ aL  t+E  ++ t f Li++ ++++++ + SRc + ++++l  e ++e l+   ++e         e++l+l+gg ++r
  MMETSP1174-20130828|13307_1  41 TLQSAIEHGCLPH-LLFYGPPGTGKTSTVLALAHTLYGP----------AMSKTRVLEMNASDERGIKVVREKIKTFAQASIGKSSNSEFPCPPFKMIILDEADSMTGDAQAALRRTIETYSKTTRFCLICNYVSRIIEPLASRCAKYRFKALPVECMLERLKFISEQEslecpeDVYEKILELSGGDLRR 220
                  6788888888888.89********************998..........56778888889999999999999*************************************************************************************9999875433333446655667788888887766 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.5e-10   3.6e-08      59     134 ..       5      75 ..       2     117 .. 0.87
   2 ?   -0.1   0.0      0.22        53     310     329 ..     208     227 ..     174     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.5e-10
    TIGR00602  59 kslelsklkedenelWveKykPetqeelAvHKkKieeveewlkaqvLeskkkriLLitGPsGCgKsTvikiLsKel 134
                  +s+  ++ + ++  +WveKy+P++  ++    + ++ ++ +++   L++     LL  GP+G gK+ ++  L+  l
  MMETSP1174-20130828|13307_1   5 TSSMSNSKRRNRAVPWVEKYRPKKVTDVSSQEEVVRTLQSAIEHGCLPH-----LLFYGPPGTGKTSTVLALAHTL 75 
                  67888999999**************************************.....***************9999876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.22
    TIGR00602 310 edlcaaesGDiRSAInsLQf 329
                  e++++ + GD+R A++ LQ 
  MMETSP1174-20130828|13307_1 208 EKILELSGGDLRRAVTLLQS 227
                  67888899**********94 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.4e-10   5.7e-08      52     129 ..      17      90 ..       6      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 2.4e-10
    TIGR02902  52 teplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarlvleeakksaaspfkeeakfveida 129
                  + p  ek rpk+  ++  qee +++l++a+      h++ yGppG Gkt++  l+l  a++    p   +++ +e++a
  MMETSP1174-20130828|13307_1  17 AVPWVEKYRPKKVTDVSSQEEVVRTLQSAIEHGCLPHLLFYGPPGTGKTSTV-LAL--AHT-LYGPAMSKTRVLEMNA 90 
                  6799**************************988888*************863.333..332.3455555566666655 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.2e-08   1.5e-05     147     191 ..      23      67 ..       8      87 .. 0.89
   2 ?    0.8   0.0      0.12        29     337     404 ..     166     234 ..     155     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.2e-08
    TIGR02903 147 llrpralseivGqeraikallaklaspfpqhiilyGppGvGktta 191
                    rp++++++  qe  +++l + +      h+++yGppG Gkt++
  MMETSP1174-20130828|13307_1  23 KYRPKKVTDVSSQEEVVRTLQSAIEHGCLPHLLFYGPPGTGKTST 67 
                  57**************************99************965 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.12
    TIGR02903 337 inpalrsrcaevffepltpedikeivlkaaeklnvklaegveeliaryt.ieGrkavniladvyglvly 404
                  i   l srca+  f+ l  e + e ++  +e+ + +  e+v e i + +  + r+av +l  ++ +   
  MMETSP1174-20130828|13307_1 166 IIEPLASRCAKYRFKALPVECMLERLKFISEQESLECPEDVYEKILELSgGDLRRAVTLLQSTFNFCGL 234
                  666799**************999999*9*************9988876525679999999988877655 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   3.4e-05     313     351 ..      52      89 ..      32     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
    TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvs 351
                   Hll+ GPPGtGkt++  ++a+ + G ++  k +v E++
  MMETSP1174-20130828|13307_1  52 PHLLFYGPPGTGKTSTVLALAHTLYGPAM-SKTRVLEMN 89 
                  5**********************999664.555666665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.7e-06   0.00064      12      84 ..      24      92 ..      21     120 .. 0.75
   2 ?   -0.6   0.0      0.41        98     132     150 ..     126     143 ..     123     165 .. 0.77
   3 ?    0.9   0.0      0.15        36     237     252 ..     214     229 ..     206     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.7e-06
    TIGR02928 12 yvpdrivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqe 84
                 y p+++++  +q ee+++ l+++++    + +l yG++GtGKt+++ ++ + l   a +k    ++ ++n  +
  MMETSP1174-20130828|13307_1 24 YRPKKVTDVSSQ-EEVVRTLQSAIEHGCLPHLLFYGPPGTGKTSTVLALAHTLYGPAMSK---TRVLEMNASD 92
                 555555555555.7889999999998888899****************999998888875...5555555555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.41
    TIGR02928 132 iivLDEiDklvkkeadelL 150
                  +i+LDE D++ +++a+  L
  MMETSP1174-20130828|13307_1 126 MIILDEADSM-TGDAQAAL 143
                  79*******9.66666644 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.15
    TIGR02928 237 ehGdaRkAidlLreag 252
                  + Gd+R+A+ lL+   
  MMETSP1174-20130828|13307_1 214 SGGDLRRAVTLLQSTF 229
                  68**********9765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.7e-07   0.00011     189     248 ..      27      90 ..       5     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.7e-07
    TIGR00368 189 ldlkdvkGqqrakraleiaaaGgh..nllllGPPGsGktllakrlqgll..Peltneealetar 248
                    ++dv  q++  r+l+ a+  g    ll+ GPPG+Gkt  +  l   l  P +++  +le ++
  MMETSP1174-20130828|13307_1  27 KKVTDVSSQEEVVRTLQSAIEHGClpHLLFYGPPGTGKTSTVLALAHTLygPAMSKTRVLEMNA 90 
                  5689*************9998764337***********98877776655569999999999875 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06   0.00035      12      54 ..      38      75 ..      27      89 .. 0.75
   2 ?   -1.3   0.0       0.8   1.9e+02     140     211 ..     164     234 ..     133     297 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-06
    TIGR00635 12 vkeklqlfikaakkrkealdhvllyGPPGlGkttlakiiakel 54
                 v ++lq +i      +  l h+l+yGPPG Gkt+    +a++l
  MMETSP1174-20130828|13307_1 38 VVRTLQSAI-----EHGCLPHLLFYGPPGTGKTSTVLALAHTL 75
                 444444443.....457899*************9888888776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.8
    TIGR00635 140 GkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarrsrgtprianrllrrvrdfaqv 211
                    +++PL +r +   r++   +e + e +k  +++ +le  e+  ++i + s g  r a  ll+   +f  +
  MMETSP1174-20130828|13307_1 164 SRIIEPLASRCA-KYRFKALPVECMLERLKFISEQESLECPEDVYEKILELSGGDLRRAVTLLQSTFNFCGL 234
                  456777777755.45666666666666667777777777777777777777777777777777766666554 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06   0.00024     582     624 ..      39      79 ..      29      95 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1e-06
    TIGR03345 582 irtarAgledpkkPlgvFllvGpsGvGktetalalAellyGge 624
                  +rt +  +e+   P+   l+ Gp G+Gkt t+lalA +lyG  
  MMETSP1174-20130828|13307_1  39 VRTLQSAIEHGCLPH--LLFYGPPGTGKTSTVLALAHTLYGPA 79 
                  555555555555554..5779********************64 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.3e-05    0.0056      43      87 ..      52      95 ..      32     114 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.3e-05
    TIGR02881 43 lhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvG 87
                  h++f G PGtGkt+    la+ ++    +sk +++e++ +d  G
  MMETSP1174-20130828|13307_1 52 PHLLFYGPPGTGKTSTVLALAHTLYGP-AMSKTRVLEMNASDERG 95
                 59************9999999888875.57999****99988665 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.3e-05     0.008      24      74 ..      54     104 ..      30     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.3e-05
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeagyerkk 74 
                  + + GP GtGkts  l++a+++  P +  +   e+++sd  G +  +e++k
  MMETSP1174-20130828|13307_1  54 LLFYGPPGTGKTSTVLALAHTLYGPAMSKTRVLEMNASDERGIKVVREKIK 104
                  3478***********************999999999999877766666666 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00035     0.085     219     241 ..      54      76 ..      47      91 .. 0.85
   2 ?    2.7   0.1     0.038       9.1     397     485 ..     245     331 ..     234     339 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00035
    TIGR03689 219 vllyGPPGcGktliakavansla 241
                  +l+yGPPG+Gkt    a+a +l 
  MMETSP1174-20130828|13307_1  54 LLFYGPPGTGKTSTVLALAHTLY 76 
                  799*********99999998885 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.038
    TIGR03689 397 aavealiekvvdalyareeenelvevteadgstevlylkdlvsGamlan.ivdrakkaaikdeleggqkglraehllaavadevrenedl 485
                  + + al+++v+d+l+a  ++n++ +++ +  +   + l+ +++  ++++ ivd ak + + ++ ++g+ + + +++ +++ d ++e+ +l
  MMETSP1174-20130828|13307_1 245 EVAGALSSNVMDELWAAIRSNSFDQLESVVEDS--IVLAGFAAPLVIEQlIVDMAKLTDLTNA-QKGKVAQTLAQVDKCLLDGAEEELQL 331
                  55779******************9998876654..5678999999997548999998887665.44556666667777776666666555 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0003     0.072      22      84 ..      35      98 ..      31     226 .. 0.89
   2 ?   -3.1   0.0       4.2     1e+03      12      32 ..     300     320 ..     291     334 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0003
    TIGR03420 22 naellaalrelaeakaerllylwGesgsGksHLLqAacaaaee.agksaiylplkelaqllvev 84
                 ++e++++l+++ e+    +l ++G++g+Gk+  + A+++++   a +++ +l+++   +  ++v
  MMETSP1174-20130828|13307_1 35 QEEVVRTLQSAIEHGCLPHLLFYGPPGTGKTSTVLALAHTLYGpAMSKTRVLEMNASDERGIKV 98
                 6899*******9999999**************99999998765144566777777766666655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.2
    TIGR03420  12 atldnFlagenaellaalrel 32 
                  + l n  +g+ a++la+++++
  MMETSP1174-20130828|13307_1 300 TDLTNAQKGKVAQTLAQVDKC 320
                  334444444444444444444 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.7e-05     0.019     166     195 ..      54      83 ..       7      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.7e-05
    TIGR01447 166 slitGGPGTGKTttvarlllalikqskaqg 195
                  +l  G PGTGKT tv  l   l   ++++ 
  MMETSP1174-20130828|13307_1  54 LLFYGPPGTGKTSTVLALAHTLYGPAMSKT 83 
                  577899************999998888864 PP

>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.1e-05      0.02     177     196 ..      54      73 ..       8     109 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.1e-05
    TIGR00376 177 aliHGPpGtGktrtlvElir 196
                   l +GPpGtGkt t+  l +
  MMETSP1174-20130828|13307_1  54 LLFYGPPGTGKTSTVLALAH 73 
                  6889***********98765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.14        34      12      48 ..      35      73 ..      27      95 .. 0.75
   2 ?    7.7   0.0    0.0018      0.45     164     210 ..     125     170 ..     122     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.14
    TIGR01978 12 dkeiLkglnlevkkGevhaim..GpnGsGkstLskvlag 48
                 ++e+++ l+ ++++G +  ++  Gp G+Gk   + +la+
  MMETSP1174-20130828|13307_1 35 QEEVVRTLQSAIEHGCLPHLLfyGPPGTGKTSTVLALAH 73
                 57899999999999998544335*******765555544 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0018
    TIGR01978 164 klaiLDeiDsGlDvDalkivaegvnklreeekalliithyerlleli 210
                  k++iLDe+Ds +  Da  ++ ++++++ ++++ +li  + +r++e +
  MMETSP1174-20130828|13307_1 125 KMIILDEADS-MTGDAQAALRRTIETYSKTTRFCLICNYVSRIIEPL 170
                  79*******9.778***************999999999999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.70
# Mc/sec: 650.52
//
Query:       MMETSP1174-20130828|13308_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1388.64
//
Query:       MMETSP1174-20130828|13312_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|13316_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|13319_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 251.21
//
Query:       MMETSP1174-20130828|13317_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.95
# Mc/sec: 437.65
//
Query:       MMETSP1174-20130828|13315_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.64
# Mc/sec: 1231.21
//
Query:       MMETSP1174-20130828|13321_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.5   3.1    1.3e-05   22.2   2.2    1.0  1  TIGR00893 2A0114: D-galactonate transporter
     0.0048   14.9  11.0     0.0056   14.6   5.0    2.1  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   2.2   6.2e-09   1.3e-05     221     373 ..      58     215 ..      30     231 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.2e-09
    TIGR00893 221 algqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiagl..vlsllliatnlvaskia.....alalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaat 373
                   ++ f+++ +l+ ++t +  + ++++g s+l+++ l +  ++ g+v+ vl+ +    l  +g sl++   + +++++  +ls+l  +++   s++      ++ +  l f+++  aa+   ++ + + ++  gl  G+ +++  l+ ++gP+++ a+ ++
  MMETSP1174-20130828|13321_1  58 LMVAFSLQHTLGALGTLVTPLATNNYGWSPLQISYLYAAFGVSGLVATVLFVVYNKRLTARGGSLLSHMWVIAVGLItcLLSTLWLVFDQ--SPRGmygggCMLSFGLTFVSAPNAAVFSFIVDKGAGRQHQGLFSGIRQVVMSLGRVLGPLTFAALWDQ 215
                  45568889999999999999******************************************8776555544444331134444445553..4444002224444445555554444444455566777888888888899999**********998776 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.8      0.03        61      76     136 ..      49     108 ..      34     114 .. 0.59
   2 !   14.6   5.0   2.7e-06    0.0056      29     113 ..     127     211 ..      91     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.03
    TIGR00880  76 iadiikeeersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllf 136
                  ++  +  + + va++l  +  alg ++ pl++   + + l+ ++l+ + ++  l+a++l  f
  MMETSP1174-20130828|13321_1  49 VIQYAGYWSLMVAFSLQHTLGALGTLVTPLATNNYGwSPLQISYLYAAFGVSGLVATVL--F 108
                  55555556667777888888888888888777665544444444444444444444444..3 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.7e-06
    TIGR00880  29 pvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqa 113
                   v+ vgl++++ls+l +++ +++ +++    + +fg  ++++  aa+++ i++++  +++ gl+s +  + ++lG +lG + ++a
  MMETSP1174-20130828|13321_1 127 WVIAVGLITCLLSTLWLVFDQSPRGMYGGGCMLSFGLTFVSAPNAAVFSFIVDKGAGRQHQGLFSGIRQVVMSLGRVLGPLTFAA 211
                  5899***************************************************************************887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 829.16
//
Query:       MMETSP1174-20130828|13322_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 2198.56
//
Query:       MMETSP1174-20130828|13326_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.64
# Mc/sec: 701.19
//
Query:       MMETSP1174-20130828|13327_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-38  129.2   0.2    4.4e-38  129.0   0.2    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.8e-38  127.9   0.0    6.1e-38  127.8   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    6.2e-37  125.0   0.0    7.3e-37  124.8   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.2e-36  122.6   0.0    2.9e-36  122.3   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.4e-35  120.8   0.0    1.7e-35  120.5   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    8.9e-35  118.1   0.0    1.1e-34  117.9   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      8e-34  114.7   0.0    9.4e-34  114.5   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    6.5e-33  112.0   0.0    7.6e-33  111.8   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-32  111.3   0.0    1.4e-32  111.2   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.9e-31  107.0   0.0    2.2e-31  106.8   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    7.3e-30  101.7   0.0    8.5e-30  101.4   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.8e-28   94.9   0.0    9.2e-28   94.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.2e-26   90.3   0.0    2.4e-26   90.2   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    9.8e-25   85.0   0.0    1.2e-24   84.7   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.1e-20   70.4   0.0    4.5e-20   69.9   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.7e-19   67.0   0.8    7.2e-19   66.0   0.5    1.5  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.1e-19   66.6   0.0    5.1e-19   66.3   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.5e-19   66.8   0.0    5.3e-19   66.6   0.0    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.4e-19   66.2   0.3    2.1e-18   64.7   0.2    1.7  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-17   62.2   0.7    7.2e-17   59.5   0.1    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    4.9e-17   60.0   0.1    1.5e-16   58.4   0.1    1.7  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    6.5e-17   59.4   0.5    1.8e-15   54.6   0.3    2.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.4e-17   59.4   0.0    9.6e-17   59.0   0.0    1.1  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      2e-16   58.0   0.9    2.9e-16   57.5   0.6    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.3e-15   55.3   0.1    3.6e-07   27.8   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.5e-15   53.8   0.9    1.9e-14   51.4   0.7    1.8  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    4.6e-15   53.5   0.0    6.8e-15   52.9   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      6e-15   53.0   0.0      1e-14   52.3   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.6e-14   51.6   2.2    6.1e-14   49.7   1.5    1.7  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.7e-14   50.0   0.2    7.4e-14   49.4   0.1    1.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    6.4e-14   49.9   3.9    4.4e-13   47.1   2.7    1.9  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.4e-12   45.3   0.0    2.4e-12   44.6   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.9e-12   43.2   0.1    6.3e-12   42.5   0.1    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    7.7e-12   43.0   0.0    1.1e-11   42.6   0.0    1.1  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.1e-11   41.5   0.1    9.8e-07   26.3   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.4e-11   41.3   0.2    3.5e-10   37.5   0.1    2.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.6e-10   38.7   0.1    4.6e-10   37.3   0.1    1.7  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.4e-10   37.5   2.2    1.3e-09   35.0   1.5    1.8  1  TIGR00955 3a01204: pigment precursor permease
      4e-10   37.2   0.0    1.9e-09   34.9   0.0    1.8  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.3e-10   36.3   0.0    1.2e-09   35.9   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      1e-09   36.3   0.0    1.8e-09   35.5   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.5e-08   32.4   0.1    3.4e-08   31.2   0.1    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.6e-08   32.3   1.7    3.4e-07   28.0   1.2    2.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.6e-08   31.3   0.1    4.8e-08   29.8   0.0    1.6  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.7e-08   31.1   0.0    5.5e-08   30.6   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.4e-08   29.8   1.1    0.00079   16.3   0.1    2.1  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.3e-07   28.8   0.0    1.7e-07   28.4   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.7e-07   28.1   0.2     0.0021   14.5   0.0    2.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.7e-07   27.9   0.0    4.1e-07   26.6   0.0    1.5  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.6e-07   27.3   0.3    4.5e-07   27.0   0.2    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
    9.4e-07   26.2   1.0    3.3e-06   24.4   0.5    2.0  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.4e-06   25.8   1.3     0.0058   14.0   0.4    2.0  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.2e-05   22.9   0.2    2.6e-05   21.7   0.1    1.5  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    0.00018   16.3   0.0    0.00022   15.9   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    0.00062   16.8   0.0    0.00089   16.2   0.0    1.1  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0014   15.1   0.0     0.0017   14.8   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
     0.0019   15.1   0.0     0.0029   14.5   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0029   15.2   0.0     0.0043   14.7   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.012   11.0   0.6      0.041    9.2   0.1    1.7  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.037   10.8   0.0      0.068    9.9   0.0    1.3  1  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ


Domain annotation for each model (and alignments):
>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.2   6.4e-40   4.4e-38     348     530 .]       3     180 ..       1     180 [. 0.96

  Alignments for each domain:
  == domain 1    score: 129.0 bits;  conditional E-value: 6.4e-40
    TIGR02868 348 eevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                  ++vl+g+sld+ +G++va++G++G+GKs L ++l+++   ++G++t++g + +s++   +r+++++++q++ lF  tvre l  +    +de ++ +L+rvgL+  +++Lp  ldt + +g  +lS Ge+  l lARaLl++a v+l DE + ++D +te ++++ +l+ +++ tv+ + hrl
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREAL-CGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILS-LSNVTVLCICHRL 180
                  569***********************************9.9***************************************98.599999*****************************997..69***************************************98875.67899******86 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   8.9e-40   6.1e-38    1299    1507 ..       3     207 ..       1     223 [. 0.95

  Alignments for each domain:
  == domain 1    score: 127.8 bits;  conditional E-value: 8.9e-40
    TIGR00957 1299 dlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsell 1507
                   d vlr l++ +  g kv i+grtg+gkssl  +l+r   s  g + ++g +   + l  lr  + +ipq+p lf  ++r  l    ++ de vw+ l+   l++ ++ lp +ld    +g   ls g+  l+clarall  + +++ de +++vdl t+  i   i   + + tvl i+hrl  i  ++ v +l++g v ef++   ll
  MMETSP1174-20130828|13327_1    3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLIL-SLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207 
                   789**********************************987.69***************************************9999*****************************99998..5***********************************999988885.6899*******************************976666 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   1.1e-38   7.3e-37     480     684 ..       3     202 ..       1     209 [. 0.94

  Alignments for each domain:
  == domain 1    score: 124.8 bits;  conditional E-value: 1.1e-38
    TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGp 684
                  + +L+ +sl++  G+kvaiiGr+GsGKs+l   ll++y+   G++++ g d + +    lr++i ++pq+++Lf  t+r+ ++ g  ++ede++  +++++G+++ +++ p  ld++++++  sLS G   ++ laRall+  +++l DE +s++D ++e ++++ L   l++ T++ + Hr + ++   ++ +l++Gr+v  G+
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALC-GPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMN-LILSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGS 202
                  67899*********************************96.5**************************************996.7778*****************************9654..7**************************************986.55667899**************************98775 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   4.2e-38   2.9e-36    1233    1441 ..       4     209 ..       2     225 .. 0.93

  Alignments for each domain:
  == domain 1    score: 122.3 bits;  conditional E-value: 4.2e-38
    TIGR01271 1233 avlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvt.lqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllne 1441
                    vl+ ls+ v  g +v ++grtgsgks+l+sallr+  + g ++++g  w+s+ l + rka+ +ipq   ++  t r  l     + de +w v + vgl++ i ++p +ld  + +g   ls+g   l+clar++l  a ++l de s+ +d  t l+i+   l  ++sn tv+   hr+  +    +  +++  +v ++ si  ll++
  MMETSP1174-20130828|13327_1    4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRSTGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQGS--LSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATeLRIM--NLILSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLLSD 209 
                   5899*****************************************************************************************************************97..9*******************************88834454..56679************************************999986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   2.5e-37   1.7e-35     487     696 ..       3     207 ..       1     210 [. 0.95

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 2.5e-37
    TIGR01193 487 sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkell 696
                  ++vl  +sl++ k +k++++G +GsGks+l   l++f+ +  G+++++g + k +   +lr+ i  +PqeP +f  ++ e l        ++e ++ +++ + +++ i +lp+ ++t +   + s+s G    l+larall ++ v++ de++s++dl te +i++ +l+l++ t++ + hrl+  ++  ++ +l++G+++e Gs   ll
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALC--GPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMR--QGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207
                  679999********************************75.6***********************************999874..5568999*************************998..789*******************************************************************************987776 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   1.6e-36   1.1e-34     467     672 ..       4     207 ..       1     211 [. 0.95

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 1.6e-36
    TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLl 672
                  +vL+ +sl + +G  vai+G  GsGKS+l+  LL F + ++G++   G+d +++ + ++R+ +  + Q+ +l+  ++ e+++g +s+  +++w +++++gl   i ++Pm l T + +g  +lS G    l +Aral +   ++l DE  S +D  t   +++ +  l +vt + i HRL  i++ +++ +l+ Grvve Gs   Ll
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLsNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207
                  79**********************************98.78***************************************************************************887..59***********************************9999987666389******************************987665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   1.4e-35   9.4e-34     494     701 ..       3     207 ..       1     216 [. 0.94

  Alignments for each domain:
  == domain 1    score: 114.5 bits;  conditional E-value: 1.4e-35
    TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLm 701
                   +vl++L++ +  G+ va++G  GsGKS+  + l ++Y+  +G++++ g++ k +    l++ ++l+ qEP+lf+ +vre +  G  + ede v  + ++ + h+ i  l+   dt +  +Gs ls G    + +ARAL++  +v++ De  S +D ++e  + +   s ++ tvl i hrL+ +++  ++++l++g+vve G    L 
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALC-GPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMR-QGS-LSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNlILSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207
                  68************************************96.59*************************************875.888999**************************985.565.79*******************************99988877689999*******************************9877665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   1.1e-34   7.6e-33     353     561 ..       3     206 ..       1     214 [. 0.94

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 1.1e-34
    TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeL 561
                    +l+gl+l v +G +va++G +G+Gks l++ llrfy  + G++ ++G d ++++   lr+ + l+pq+++lf + v+e +  G +   de+v    +    +  i +lp   dt++  r  +Ls G    + +ara+l+ a ++L de  s++d  +e ++ + + +l ++ t l i hrL  + +  ++++l++Gr+ve G+   L
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREAL-CGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPM--RQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL-SNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVL 206
                  679***********************************8.57*************************************998.6*********************************9..55689**************************************9988776.578*****************************986555 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   2.1e-34   1.4e-32     336     526 ..       4     189 ..       1     192 [. 0.93

  Alignments for each domain:
  == domain 1    score: 111.2 bits;  conditional E-value: 2.1e-34
    TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladki 526
                   +l+++sl+v  g++va++G  G+GKs+l ++ll+f +   G++ v+g++ ++++   +rk i  +pQ+P+lf +tv+e +  +    ++++v  +l+r+gl++ ++ lp  l+t++ ++   LS G++  l LArall++a ++l DE  +++D +te ++++ + + +++ tvl + Hrl+++++  ++
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREAL-CGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILS-LSNVTVLCICHRLHHIHHFSHV 189
                  5899*********************************7.99*************************************987.5667778888*********************9999665..6*******************************************99.5789***********9998877 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0   3.2e-33   2.2e-31     346     556 ..       3     207 ..       1     215 [. 0.93

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 3.2e-33
    TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLl 556
                    +l+++sl+v +G  va++Gr GsGks+l + l RFy  ++G++ + g+d + ++L  LR+ + l+ q+  LF  t+ e +      + +++ v  +l+   l+  + +lp  ldt++ +  + Ls G    l +aRall+ a +++ De  s++D   e ++ + +  l  + t l i hRL  i++  ++ +l+ G++ve G+   Ll
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALC--GPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQ--GSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL-SNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207
                  5799**********************************7.67*************************************9775..445799***************************854..67************************************9999877665.789*****************************9877666 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   1.3e-31   8.5e-30     471     681 ..       4     209 ..       1     218 [. 0.94

  Alignments for each domain:
  == domain 1    score: 101.4 bits;  conditional E-value: 1.3e-31
    TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakP.aiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak 681
                   vl+ lsld+ +G  + i+G++GsGks l   l r+y   +G++ v g d   +    lr+ + ++ qe  lf  ++r+   l+ P + ++e v ++ +  G h  i +l+   +t +    ++ls G    + laral+    +++ de  s++d  +e  im+ + +++ + tv++i hrl  +++  ++ +l++G++ve G+  +ll++
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREA--LCGPvSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMR--QGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS-NVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLLSD 209
                  79***********************************7.68**************************************6..5666367899999*********************985..579****************************************9998886.78*******************************9999975 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   1.3e-29   9.2e-28     491     694 ..       2     202 ..       1     210 [. 0.94

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 1.3e-29
    TIGR03796 491 eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl.rrRgctciivaHRLstiRdcdeiivlerGkvverGt 694
                  e  +++++sl++ +G++vA++G  GsGks +   +  +y+ ++G++++ g++ +++    l++++ l+ q+ +lf+ tvr+ l     + ++e++   ++   +h  i+++p  +++ + +g+  ls G+   l +ARaL +  ++++ DE+ s++D +tE +i++ +    ++t++ + HRL  i    ++ +l+rG+vve G+
  MMETSP1174-20130828|13327_1   2 EDRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALC-GPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQGS--LSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLIlSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGS 202
                  567899************************9888888887.57**************************************997.57899******************************996..9**************************************997516789*****************************997 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   3.6e-28   2.4e-26     331     536 ..       3     202 ..       1     209 [. 0.95

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 3.6e-28
    TIGR01842 331 kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGe 536
                   ++l+g+s+ + +G+ +aiiG  gsGkssL   l+  +  ++G++ + g d k +   +l k i  +Pq+ +Lf  tv e ++     +++e+v    +  g h  i+rlp+  dt + +g  +Ls G    + LaRal    ++++ De  +++D + e  +++ + +l   ++tv+ i hr + ++   ++++l+ G++ +fG+
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFY-RSTGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVS-FEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQG--SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL--SNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGS 202
                  579*******************************9866.578*****************************************9999.****************************99764..7****************99999999******************9887..579******************************7 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.7e-26   1.2e-24     352     572 ..       7     223 ..       2     226 .. 0.91

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.7e-26
    TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeli.qkdgrfakllrasgl 572
                  r +s+++  g  vai+g tg+gk++l   l r y   +g+++++g d +++    lrk+i  + q+  l+  ++re +  g  +  de v    +    +  i       dt +  r   ls ge   l +ara+l+ a +++ de +s++d+ te r+ + i +l+ n t + i hrl  + +   v +l++gr++e gs+  l  +    +++ +r++gl
  MMETSP1174-20130828|13327_1   7 RGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREAL-CGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPM--RQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS-NVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLLsDPLSALTEHMRSAGL 223
                  56899999*************************975.7**************************************97.6999999*****************99999999976..7788********************************************997.789******************************987640444566666666666 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.6e-22   4.5e-20      14     241 ..       3     217 ..       1     223 [. 0.86

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 6.6e-22
    TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpkekkted 241
                   ++l+ ++l++ k + +a+iG +G+Gks+l+ +l r+      +r +G+++++g+d  +      +lrk + ++ q+p+ f  ++ + +   +  ++      + ++v    + a l   + +       sLs G    lc+aral     v+L De +s++D  +  +i +li +L+ ++t++ + h ++  ++ s  +a++ +G++ve g+   ++++p ++ te+
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRF------YRSTGHLTVQGEDWKSM--RLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVW-MVLNRVGLHTRIARLPMRLDTP--MRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS-NVTVLCICHRLHHIHHFSH-VAILQRGRVVEFGSIPVLLSDPLSALTEH 217
                  67999**************************999887......5778*********8776..6789*********************99877777764333.3444555556666676444443..45569***************9999***************************6.79***********999985.8899**************99999999986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.5   1.1e-20   7.2e-19      14     220 ..       3     207 ..       1     221 [. 0.85

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.1e-20
    TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieea..larlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaela 220
                   r+l+++sl+v kg+ va++G  G+Gks Lfs l r y++ +g+++v G d ++ +   l++ + ++ q++ l    +v++ l    + +  +   + +r+  +  +arl ++  +  +  +L+ G+   + +arallh  +++L De +  +D+++  ++++ + +l+   +++vL   h ++ +++  ++ +l++G+v+  G+   l 
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKaIRLIPQEPQL-FGHTVREALCGPVSFEDEAVWMVLNRVGLHtrIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLL 207
                  689*********************************9975.7*************999998636677777776.6789****9998888887777777777655004555555555555667*******************************************9998...8999999**********************999876665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   7.5e-21   5.1e-19      21     240 ..       6     218 ..       2     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 7.5e-21
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkds..ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpktelakkf 240
                  l  +sl v kg  + +ig +g+gks+l   +  +   + g++ v+g+d  +++ + l   r+ i +i q  +l+   tv + +  p+ +e+++   + ++v     +  l  + d+      ls g+   + +aral     v+lcde +s++d at   i++l+  +    ++t+l i h ++ +++   +va++++g+++e g++  ++s+p + l++++
  MMETSP1174-20130828|13327_1   6 LRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFY-RSTGHLTVQGEDWKSMRLPRL---RKAIRLIPQEPQLF-GHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL---SNVTVLCICHRLHHIHHF-SHVAILQRGRVVEFGSIPVLLSDPLSALTEHM 218
                  77899**********************98875554.577*********988776655...77777888887766.68************************988888888877776225678***************************************9998776...58************9987.57**********************99998754 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   7.8e-21   5.3e-19      16     208 ..       4     191 ..       1     196 [. 0.89

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 7.8e-21
    TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpe..elsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                  ++L+ +sl + kg+ + ++G+ G+Gk++l+  ll   + s G+++v+ged +++   +lp lR+ i ++ q+ +l+ + tv e +  +++ + +    + +rv    +   l  + ++  +  +ls+Ge     +aRa+++  +++l De    +D +++ ri++l+ +l+   +tv+  +h  + ++++++  +
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSM---RLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRqgSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS--NVTVLCICHRLHHIHHFSHVAI 191
                  67999**************************9998765.68*******998766...69***************9875.9**********9999999999***999999999999987654227******************************************98776..58********999998877543 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.2   3.1e-20   2.1e-18      18     215 ..       5     196 ..       1     197 [. 0.84

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 3.1e-20
    TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvq.........lsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                   l ++++++ kG+ v ++G +G+Gks+l+  +l   + s+G++ v+g+d    +  ++p lr+ i ++ q+ +l+  +tv + +  ++          +e v ++l++vGl+ +  +lP++         ls Ge   +++ara+++  a++l de ++ +d ++ + i++l+ ++    +tvl   h  + +++ ++    l++G+
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDW---KSMRLPRLRKAIRLIPQEPQLFG-HTVREALCGPVS-------FEDEAVWMVLNRVGLHTRIARLPMRldtpmrqgsLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL--SNVTVLCICHRLHHIHHFSHVA-ILQRGR 196
                  6999****************************99887.57*******985...66789*************99876.578876655443.......34678999*************9996233333333699***************************************9766..568********99999988754.466665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.1   1.1e-18   7.2e-17      17     209 ..       9     199 ..       2     203 .. 0.84
   2 ?    0.2   0.0       1.5     1e+02     150     168 ..     205     223 ..     200     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.1e-18
    TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkd..htrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlp.........eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  ++l v +G +vai+G +G+Gks+l++ +  f    +G+++v+++d   +r++  ++ + ++ qe  lf h tvr+ ++  +       + + e v  v ++vG+   ++rlp         ++ls G+   + lar l+++  ++l de  s++d +    ++ l+  l+   ++t+l ++h+l+++    s+v++++ G++  
  MMETSP1174-20130828|13327_1   9 LSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDwkSMRLPRLRKAIRLIPQEPQLFGH-TVREALCGPV-------SFEDEAVWMVLNRVGLHTRIARLPmrldtpmrqGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIH-HFSHVAILQRGRVVE 199
                  6899***********************999986.5799999877622578899999**************.9***987543.......578999*****************9333333333356777777899**********************999999999998776...69********98865.578999999999865 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 1.5
    TIGR01277 150 llldepfsaldpklreeml 168
                  +ll +p+sal +++r   l
  MMETSP1174-20130828|13327_1 205 VLLSDPLSALTEHMRSAGL 223
                  47889********998766 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.1   2.2e-18   1.5e-16      15     225 ..       3     198 ..       1     214 [. 0.84

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 2.2e-18
    TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageiv 225
                  +++l+ ++l++ kG  va+iG+ G+Gks l+ ++ r+ + s g+++++g++ +++    l +lrk i +i qe +l  +   ++  L g +++++     + ++   ++    + ++r+ +      r  +Ls G+   + +aRal+  ++++l+DE  +s+D ++  ++m+l+ +++   ++tv++  H+++  ++++ ++  l+ g++v
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSM---RLPRLRKAIRLIPQEPQLFGH--TVREALCGPVSFEDEAV--WMVL---NRVGLHTRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFS-HVAILQRGRVV 198
                  67999*******************************987.569*******98865...577888999*********986..4789999*999987644..3333...344455667899999999***********************************************999886...577777777777777775.56667888877 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.3   2.7e-17   1.8e-15      14     239 ..       4     211 ..       1     221 [. 0.80

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 2.7e-17
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekrav.elldmvGladkadalpaq.........lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpk 239
                  +vl gl+l+v +G kva+iG +GsGks+++  l+ + + + G++ v+ge    m+             l ++r+ i ++ q+ +lf h   +++    pv           + av  +l+ vGl  +   lp +         ls G+   + +aral     v+l dev+s++d      ++n++  l    ++t+l + h++   ++f+  v  +++G++ve G    ++ +p 
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMR-------------LPRLRKAIRLIPQEPQLFGHT--VREALCGPVSFE--------DEAVwMVLNRVGLHTRIARLPMRldtpmrqgsLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL---SNVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIPVLLSDPL 211
                  79*******************************99987.78********999888.............6899****************5..466667777653........3333146788888888888876511111112356777778899****99999***********976666666666666...689***************9.58999*******998777777775 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.4e-18   9.6e-17      13     215 ..       3     202 ..       1     212 [. 0.85

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.4e-18
    TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaege 215
                   +vlr++sl+v kg+ va++Gr g Gk++l+ al+  + +++G+++++ged ++++   r ++ i  +pq  ++f + tv+e l   ++  +++     ++   ++  +  P+  +   R+ G Ls G    l +aRaL+    ++l De +  +  +    i + i +l   +++++l + + l+   +++ ++++l+rG+vv+ g+
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFY-RSTGHLTVQGEDWKSMR-LPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAvwmvlNRVGLHTRIARLPMRLDTPMRQ-GSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL---SNVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGS 202
                  579******************************99876.578*********99887.5799**************97.9*****9888777776445544444455678889988887776.79**************************99999876666666666555...569999999***9999975.689*******99876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.6   4.3e-18   2.9e-16      22     229 ..      16     215 ..       6     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 4.3e-18
    TIGR02142  22 gkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlslle 229
                  g   +a+ Gr GsGk+sl  ++    r  +g+++++ge +++    + lp  ++++  + qe +LF H +vre L   ++  + +   +  ++v     i  L  R     + g+Ls Ge     ++RAlL    ++l De  +++D      i+  + +ls   ++ +l + H l+ +++++ +v +l+ Grv  +g++  +l+++ ls l+
  MMETSP1174-20130828|13327_1  16 G-SKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKS----MRLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAV-WMVLNRVGLHTRIARLPMRldtpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIPVLLSDP-LSALT 215
                  4.679*************9988887775.79*******9976....458*******************.7****987666665554.3444555444444444333111224689****************************************9999998...578999*********996.8***************9999998.55333 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.3e-09   3.6e-07      19      73 ..       4      57 ..       1      67 [. 0.88
   2 !   25.7   0.0   2.3e-08   1.6e-06     123     220 ..      95     198 ..      82     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.3e-09
    TIGR02211 19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls 73
                 +vl+g+sl++ kg  vai+G +GsGks l+  l  + + ++G+++++G++ +++ 
  MMETSP1174-20130828|13327_1  4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMR 57
                 79****************************99988865.669******9998875 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 2.3e-08
    TIGR02211 123 kellekvglekrink.........kpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                   ++l++vgl+ ri +         + + ls Ge     +aral+   +++l+de  + +d +t  +i++l+l l    n+++l + h l+ ++++++v  l+ g+++
  MMETSP1174-20130828|13327_1  95 WMVLNRVGLHTRIARlpmrldtpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFSHVAILQRGRVV 198
                  5678888888887762222221225578999****************************************9985...7899999********99999999999875 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.7   2.8e-16   1.9e-14       3     228 ..       7     221 ..       5     223 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 2.8e-16
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalal..rgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeea.eev...lk..kypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkLlsa 228
                  ++++l++ +g  +a++G  GsGks   +a+l +       ++G+++++g++ ++++l    ++i li q+P+         ++ ++e+l    +++++a       l++vgL+   +++   l+  +    ls G    + +a all  a++++ De ++ +D+++++++++l+ +l    ++++l i h l  + ++  +va++++G++ve g++  l+++P ++ t ++ sa
  MMETSP1174-20130828|13327_1   7 RGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-----STGHLTVQGEDWKSMRLprLRKAIRLIPQEPQ-------LFGHTVREALCGPVSFEDEAV---WMVLNRVGLHTRiARLpmrLDtpMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIPVLLSDPLSALTEHMRSA 221
                  689**************************999876.....99************96621346788999*996.......35789999*999999999998...66788899985413331111111122245555555566777899999********************99988775...6789**********9987.5*************************99998776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0     1e-16   6.8e-15      11     195 ..       3     181 ..       1     192 [. 0.85

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1e-16
    TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskk..ekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                   ++l+ lsl++ kG+ vai+G+ GsGKs l   l ++ + ++g+++++g++     ++     lr+ +  + q+ +L   +tv+e l  ++ ++ +      ++  + + + ++ ++ ++  +  +ls Ge+  + lar+ll+++ ++l DE  +s+D  ++  +++l+ +l   + t++++ H  +
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGED----WKSMRLPRLRKAIRLIPQEPQLFG-HTVREALCGPVSFEDEAVWmvLNRVGLHTRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS--NVTVLCICHRLH 181
                  5799****************************9998876.56*********....3445556678999********996.69*****98888887776511455566788888999999999999********************************************9986..678888888765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.5e-16     1e-14       5     175 ..       3     170 ..       1     183 [. 0.79

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.5e-16
    TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvded....vafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre 175
                   +vl+gl+l+v +g+++a++G+ G+Gks l++ l    r  +G+++++Ge  d++   l +lrk + l+ q+p  qlf  +v e     v+f    + +  ++v       +a + +          ls+Ge   + +a a+   + v+l de ++++d a + ++++++  l +
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGE--DWKSMRLPRLRKAIRLIPQEP--QLFGHTVREAlcgpVSFEDEAVWMVLNRVGLHT--RIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSN 170
                  579*******************************98888.57*******9..688889*************98..9******99722224444444333333333322..33344444334444568*****************************************9988876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   1.5   8.9e-16   6.1e-14      16     223 ..       5     205 ..       2     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 8.9e-16
    TIGR03873  16 ivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                  ++ ++ +++ +G+  +++G  GsGks l++ l    ++ +G+++++g+d k+++  +  + + l+ q+ +     +vr+++  G + +         + +++    +ar  +   +      ls Ge     laral     ++l de    +d+++ l +++l+ +l  ++vtv+   h l +  ++  hv +l+ Grvv  G+   
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQ-LFGHTVREAL-CGPVSFEDEAVWMVLNRVGLH-TRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL--SNVTVLCICHRLHHIHHF-SHVAILQRGRVVEFGSIPV 205
                  6778899999*******************999988775.7************998777778889999865.57889***85.699999876655555555554.557888887666677789**********************************************..99**********998766.69**********9997654 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   1.1e-15   7.4e-14      22     233 ..       4     212 ..       1     225 [. 0.81

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1.1e-15
    TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl..thlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsda..aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapad 233
                   vl  lsl++  G  +a++G++GsGk++l+ a+  f ++ G +l v + d     lp  ++++ l+ q+  lf h +v e +   +  +  +   + +rv    ++ +l     +      ls G    + laral     v+l de  s++d          + +l   l ++tvl++ h  ++ +    ++ +++ G+++++G    l   p  
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRSTG-HLTVQGEDWksMRLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRldTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATEL----RIMNLILSLSNVTVLCICHRLHH-IHHFSHVAILQRGRVVEFGSIPVLLSDPLS 212
                  599**********************************9875.77787777622679*******************.78888887777777777788888877666666543300233345699999999********999**********99965444....3667788999*********7666.5556789999*********99888888765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   2.7   6.4e-15   4.4e-13      25     232 ..       4     200 ..       1     221 [. 0.79

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 6.4e-15
    TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrh.....ltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                   vl ++sl + +G  va++Gr+G+Gks l   ll + +   G+++ +G+d + +      ++r+ ++l+ q+        ++vre +  P+       +  l++   + ria+l      r ++   +   ls G    +++aral     +++ de  s++dl   + i++l+  l     +++l i h l+ +++f+ +v++l++G++ve 
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMR---LPRLRKAIRLIPQEPQL---FGHTVREALCGPVSFedeavWMVLNRVGLHTRIARLPM----RLDTPM-RQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFS-HVAILQRGRVVEF 200
                  79*********************************9985.6*********98875...5689999*****98653...35789999999985411111223344444444444322....222222.23469999999********8777788889*99**************99996...58899************8.599********95 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.5e-14   2.4e-12       8     209 ..       5     204 ..       2     221 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 3.5e-14
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqka.....svdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpe 209
                   ++g++l+v +g+ ++++G  G GK+ + + L    + + G+ +v+G D  +    ++R+ i ++pq+      +v e+L +   +e  +  + l++   + r+++l  +++    +  + + +s G    l la++l++  +v+  DE  + +D  t   i +li +l  ++vt+l   h l+ + +++ +vai+++G+++ ++++ 
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLpRLRKAIRLIPQEPqlfghTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLD----TPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL--SNVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIP 204
                  5899***********************9999998887.679********866543489*********972222256677777777777777777777777777777755544....34455789******************************************887..579************9986.7*************976 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   9.3e-14   6.3e-12     467     649 ..       4     189 ..       1     197 [. 0.86

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 9.3e-14
    TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake.vgitllsvshrksLwkyHeyl 649
                   ++  Ls++v +G+++ iiG  G GKsslf  l  ++   g           ++    ++++  +Pq P +   t+R+ +  P s e        d+ +  +L+ v L+  + r  + +d+    +  Ls Ge   + +AR + H     + DE  s v +  E ++ +l+ +  ++t+l ++hr   +++  ++
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRSTGhltvqgedwkSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFE--------DEAVWMVLNRVGLHTRIARlPMRLDTPM-RQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSlSNVTVLCICHRLHHIHHFSHV 189
                  57789*******************************999999999999995555555578999********999*********9965........678999*******987776267788744.4789*****************9999999*****************9765269*********9888876654 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.5e-13   1.1e-11      15     225 ..       5     213 ..       2     221 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.5e-13
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkv..rdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsq..lsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepata 225
                  +l  ++l+v +Gs va++G +GsGks+l+ ++  + +  +G+++++G+d   +++   ++ i ++ q+  lf h tvr+ +   +  + +    + ++v    ++ +l    d    q  ls G+   + laral     v+l de  +++d     elr    +l   ++  tv+    +   ++   ++++l++G++ + gs   +  +p +a
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLprLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQgsLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDL--ATELRIM--NLILSLSNVTVLCICHRLHHIHHFSHVAILQRGRVVEFGSIPVLLSDPLSA 213
                  688899************************9998865.68*********8877652156789***********9.9***********************999999999776665444433999999999******9999*********99995..5677753..44445555555554445556677789************9998888888765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.4e-08   9.8e-07      22      69 ..       4      50 ..       1      68 [. 0.87
   2 !   13.4   0.0   0.00012    0.0082     148     208 ..     121     179 ..      91     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.4e-08
    TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69
                  vl+ +sl+v +G  va++G++G+Gks+l+ +l + Y+   g+++v+ 
  MMETSP1174-20130828|13327_1  4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRST-GHLTVQG 50
                 68999********************************987.7777765 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00012
    TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                     s Ge   + +aral+ +  ++L de  +s+d a+   +++li ++  + ++++ i h 
  MMETSP1174-20130828|13327_1 121 GSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL--SNVTVLCICHR 179
                  46799******************************9999999*99876..56777888775 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   5.2e-12   3.5e-10      13     229 ..       3     203 ..       1     209 [. 0.79

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 5.2e-12
    TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiL.DeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                   ++L+gl+l+v kG  +ai+G+ GsGks L ++l    +   ++G+++++g+d  +++   r r+ + l  q p+ + G ++    r+al    + ++e+ + ++  +  l+++++ l +  +   R+     s Ge      l  all+P  ++L De+ s +D+ +   +++ + +l   + ++l i h   l +  +  +v +l +Gr+v+ G++
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR---STGHLTVQGEDWKSMRL-PRLRKAIRLIPQEPQ-LFGHTV----REALCGPVSFEDEA-VWMVLNRVGLHTRIARLPMRLDTPMRQ--GSLSQGEAMLL-CLARALLHPAAVMLcDEVSSSVDLATELRIMNLILSLS--NVTVLCICHR--LHHIHHFSHVAILQRGRVVEFGSI 203
                  689*******************************97655...68*************98.5899*********97.566665....55555544444444.566666677888888887776666554..45899998655.556689999988877*********99888999997775..5678889985..555556789***********9986 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   6.8e-12   4.6e-10      18     201 ..       3     179 ..       1     198 [. 0.76

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 6.8e-12
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvq.eGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee.........rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd 201
                   +vl  ++l++ +g  v + G +GsGk  l++ +  lr  +  G+l+v g++ k     +l ++r+ i +i q+  l+   t+++ +   + ++++         +  +l+ vgl+             ++   ls G    + +aral +   ++l de  +++d  +   +++l+  l+   ++t+l + h 
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSAL--LRFYRsTGHLTVQGEDWKS---MRLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEA--------VWMVLNRVGLHTriarlpmrlDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHR 179
                  589**************************99744..4443316*******99765...578899**************86.7888777777777663........334455555555222222211444556679999999***********************************99886...5677777775 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   1.5   1.9e-11   1.3e-09      39     250 ..       4     202 ..       1     208 [. 0.81

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.9e-11
    TIGR00955  39 ellknvsGvaksGellAvlGsSGaGKtTLlnalaf..rsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrk.cad..trigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGs 250
                  ++l++ s  + +G  +A++G  G+GK+ L++al    rs+  l+v+g    + + +    +r+    + q+  ++++ tvre+L     +  ++        e+v  vl+++gL+   a    r  +p r  +lS Ge   l la  ll+   +++cDE  s+ D ++   +++++ +l++   tv++  H    +  + f ++ +l++Grvv  Gs
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRfyRSTGHLTVQG---EDWKSMRLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSF--ED--------EAVWMVLNRVGLHTrIARlpMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSN--VTVLCICHR--LHHIHHFSHVAILQRGRVVEFGS 202
                  5677778888899******************9864113344444444...244567777899999999999999987.9*****876555..34........78999******9762333226889999999*******************************************988887..588999997..456789************97776 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.9e-11   1.9e-09      11     222 ..       8     211 ..       3     224 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2.9e-11
    TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedr..yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPa 222
                   ++l++ +G  + iiG +GsGks+l   l r+   ++G++ + Ged   +   +l    rk i ++ q+  lf h t+ + +   + + + +     ++     +   l+   d+      ls G    + laral     ++l de  s++d  +   + + ++ l    + t++ i h l    +    ++il+ G +v  G+   +l +P 
  MMETSP1174-20130828|13327_1   8 GLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRL----RKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHF-SHVAILQRGRVVEFGSIPVLLSDPL 211
                  579****************************976.77*************99999....9**************9.7777665444444333333333333333333333333320033457777777899**********************999988888888886...5799*******876555.68*************9888888886 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.8e-11   1.2e-09      15     213 ..       3     200 ..       1     213 [. 0.84

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.8e-11
    TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl.evrkniGylPehnPlyldlyvreyl....efsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivad 213
                  +++l  +s+++ kG+ v  +G  G+Gks+l   l  + + ++G ++v+ged     l + rk i  +P+   l+    vre l     f+ +   +   + +  ++  i++  ++ ++  + g ls+G      la+allh   v++ de ++ +d    + i ++i ++++  tv+   h +  ++    +v i+++G++v  
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLpRLRKAIRLIPQEPQLFG-HTVREALcgpvSFEDEAVWMV--LNRVGLHTRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSN-VTVLCICHRLHHIHHF-SHVAILQRGRVVEF 200
                  6789999*************************9999976.5799******987766537899******9777765.679**9833334544433333..44555678899999999999**************************************************985.799999*******987.57999*****9975 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.6e-11   1.8e-09      18     232 ..       6     209 ..       3     213 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.6e-11
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkad.ksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqad 232
                  l+ lsl+v +g+  +iiG  G+Gk+ l+ ++    r++ G+++++g+d ++++  ++ r+ i    q+p++f  +tv+e l   ++ + + v+ +l +r+       +++ ++ + ++  +  + g+Ls G+   L ++  l+  ++++l De  + +  + + ++ +l+ +l+ + +v+ + h ++ +++++ +v++l++G+v+  Gs+  + +d
  MMETSP1174-20130828|13327_1   6 LRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRST-GHLTVQGEDWKSMRLPRL-RKAIRLIPQEPQLFG-HTVREALCGPVSFEdEAVWMVL-NRV------GLHTRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS-NVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIPVLLSD 209
                  7889***************************9887765.**********99998886.66799999******6.79*****877765505566666.333......33344444555556677889**********************************************97.57999**********996.7*************99766665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1     5e-10   3.4e-08      12     169 ..       2     164 ..       1     178 [. 0.80

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5e-10
    TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr.delaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgl.e......dlpva..qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellael 169
                  e+++l+gls++++ G  +++ G+ G+GK++L   l    ++ +G++++++++ + +r ++l++++  +  ++ l ++ +++E L    ++    +++v+  l++vgL+   +      d+p++  +Ls G    l lar ll  a + + DE   ++D ++  ++++l
  MMETSP1174-20130828|13327_1   2 EDRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRlPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFE---DEAVWMVLNRVGLHTRiArlpmrlDTPMRqgSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNL 164
                  6789****************************999988876.69*****9999888735667788888888888765.9999986555444...457899999999976423111111445542269*******************************9987666655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.2     5e-09   3.4e-07       2     201 ..      12     209 ..      11     219 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 5e-09
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladr...pv..GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadg.apdqlqd 201
                  +v kG  ++++G  G+Gk++l+ a+l + + + G++ v+g+     ++ +  +p+  +     p + +    + r  l G++    +a ++  +    + ++++l  r   p+  G ls G+   + +aral     ++l de  + +dl ++ ++++l+ +l+  + ++l   h l +  + ++  +l  grvv  g  p  l d
  MMETSP1174-20130828|13327_1  12 DVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGE----DWKSMR-LPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRldtPMrqGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS--NVTVLCICHRLHHIHHFSHVAILQRGRVVEFGsIPVLLSD 209
                  6779999*******************9987.99******96....444433.344444444445554444444577788888888888888877766666666665443334444999999999999******999***********************98887..589****************99*******975515666655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     7e-10   4.8e-08     301     516 ..       7     207 ..       3     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 7e-10
    TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakei..ldk..lpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiv 516
                   ++sl+v ++    ++G +G+Gk++l   l+     ++G+++v+ G++w  m  +      r +k i l+ qe +l+ h tv e l   +++e  de       +vl+ vG++   a+    ld       ls+Ge   + la+ l++   +++ de + ++d  t+ ++ + il      + t + + h +  +++    +a+++ G++v+ G+   ++
  MMETSP1174-20130828|13327_1   7 RGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQ-GEDWKSMRLP------RLRKAIRLIPQEPQLFGH-TVREALCGPVSFE--DE----AVWMVLNRVGLHTRIARLPmrLDTpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHFS-HVAILQRGRVVEFGSIPVLL 207
                  57899*********************999998765.77999997.****999766......5778999**********9.7999999988766..44....344699******999985411443113467*******************************************9764...6799**********9986.6888899******9865554 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     8e-10   5.5e-08      13     202 ..       3     197 ..       1     203 [. 0.77

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 8e-10
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlentekk.........kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGkl 202
                    v+  +sl v k s  +++G  G+Gks+l+  l  + r ++G+++++g++w    l  +   i   +   +l  +   +  +   + +++ +  vl+ v+l++   +         + + +s G    l +a all+   +++ de +  +d     elr +   ++   +tv+   h l  +++ + h+ i++ G++
  MMETSP1174-20130828|13327_1   3 DRVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARlpmrldtpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLAT--ELRIMNLILSLSNVTVLCICHRLHHIHHFS-HVAILQRGRV 197
                  578999*************************99998776.67**********9988866665555444444444444445558888999999999999999987655511112221145566667777899*******99*************876..56655444555679************9975.8999999986 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00016     0.011      42      87 ..       8      52 ..       5      68 .. 0.84
   2 !   16.3   0.1   1.1e-05   0.00079     163     256 ..     121     210 ..     100     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00016
    TIGR03415 42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkded 87
                 + sldv +G  + ++G +GsGkssl+ a+ ++   s G+++v+ ed
  MMETSP1174-20130828|13327_1  8 GLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGED 52
                 679***********************99988754.66777777665 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.1e-05
    TIGR03415 163 gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkP 256
                  g ls G    + lara+   a ++l de  s++d     ++ + +l+l    + t++ + h l    +  +++ai++ Gr+v  g+   ++ +P
  MMETSP1174-20130828|13327_1 121 GSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHH-FSHVAILQRGRVVEFGSIPVLLSDP 210
                  678888888999**********************988888888888876...579********98665.589**********999876666666 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.5e-09   1.7e-07       1     194 [.      21     212 ..      21     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.5e-09
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte..vpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakr..kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePan 194
                  ++G +GsGk+ l+  l  + + ++G++ ++ged  +   p  ++ + ++ q+  Lf h tv e +  ++  + +    + +rv    ++ +l  + +   +   ls G    + lara+ +   ++L De  s++D     ++ + +        +tv+ + h  +        +a+l++G+++  g+   + ++P +
  MMETSP1174-20130828|13327_1  21 IIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSmrLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLI---LSLSNVTVLCICHRLHHIHH-FSHVAILQRGRVVEFGSIPVLLSDPLS 212
                  6899**************987.79********9864115777788*************.9***********************99999999988766511555699****************************9966544443333...33345889999998776555.5579********999998888888765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.1e-05    0.0021      19      51 ..       4      36 ..       1      94 [. 0.62

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.1e-05
    TIGR03719 19 eilkdislsffpgakiGvlGlnGaGkstllkim 51
                 ++l+ +sl   +g+k+ ++G  G+Gks+l+  +
  MMETSP1174-20130828|13327_1  4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSAL 36
                 577788888888888888888888887765443 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     6e-09   4.1e-07      16     218 ..       5     196 ..       2     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 6e-09
    TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218
                   l +++l +  G  v++ G  G+Gks+l+  l   y      G+++ +ge+ k+  +    rk i +i qe  l  + +v e +        +   m  + + l  +  +++l +  +   r  + l  G+  l+ +a+al   + +++ de s+s+  +    ++++i  l + +v c  i h+l+ ++  s  +++++ G+
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS---TGHLTVQGEDWKSMRLPR-LRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGL--HTRIARLPMRLDTPMR-QGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSNVTVLC--ICHRLHHIHHFSH-VAILQRGR 196
                  68899***********************9999998865...799*********999876.5889*********9875.78887654444444444444333333..3334444444444455.68899*****************************988777889***9988777766..6899999998774.56666666 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   6.6e-09   4.5e-07      19     214 ..       5     198 ..       2     213 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 6.6e-09
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrv..adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrki 214
                  v+  ls+ + +g    ++g  g+gks++   +l +   ++g++tv ge+  + r    r +i ++pq  +l    tvre l     +       + + +     +arl  + d+++   +ls g    l laral+    +++ de ++ +d  +   i + + sl     t+l   h +   + +   + +l+ gr +
  MMETSP1174-20130828|13327_1   5 VLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFY-RSTGHLTVQGEDWKSmRLPRLRKAIRLIPQEPQL-FGHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMrqGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS--NVTVLCICHRLHHIHHFS-HVAILQRGRVV 198
                  56789***********************99999886.589*******987652566678899*****9998.578*****998888888888888999999999*******9987622569*******************************988888887777664..457777777777666553.45666666655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.5   4.9e-08   3.3e-06      18     220 ..       4     204 ..       1     218 [. 0.75
   2 ?   -0.2   0.0       1.5     1e+02     156     171 ..     205     220 ..     196     227 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4.9e-08
    TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrdit..rlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseek..yPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPe 220
                  ++l+ +sl+v kg  v+++G  G Gk++L+ ++  + + ++G+++++g+d    rlp  ++   ++ q   Lf   tv+e +   ++ +      v +rv     +  l+   +     g ls G    + Laral     ++L De  s++D     ++ + + +l    +vt + + h       +  +++++++g++   g+  
  MMETSP1174-20130828|13327_1   4 RVLRGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKsmRLPRLRKAIRLIPQEPQLFGH-TVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTpmRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLS---NVTVLCICHRLHHIHHF-SHVAILQRGRVVEFGSIP 204
                  68999*************************99988865.679999999986422678888999**********75.99998876665555445555555554444444444333210336689999999************************887777766666664...68888888877765544.578888888888888755 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 1.5
    TIGR03265 156 LLLDePlsaLDakvre 171
                  +LL +PlsaL  ++r 
  MMETSP1174-20130828|13327_1 205 VLLSDPLSALTEHMRS 220
                  58999*****999986 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00085     0.058      24      63 ..      13      51 ..       4      73 .. 0.76
   2 !   14.0   0.4   8.5e-05    0.0058     141     233 ..     122     214 ..      88     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00085
    TIGR02323 24 lypGevlgivGesGsGkstllkalaarlladaGevtyesr 63
                 +  G  ++i+G +GsGks+l++al   +  ++G++t +  
  MMETSP1174-20130828|13327_1 13 VVKGSKVAIIGRTGSGKSSLFSALLR-FYRSTGHLTVQGE 51
                 5678889***************9965.7777777766554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 8.5e-05
    TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvlpkhpytql 233
                  ++s G    l +ar+l+    +++ +     v + + l ++  ++   +++v+ + h l  +  ++  + ++++Grvve G   vl   p + l
  MMETSP1174-20130828|13327_1 122 SLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSLSNVTVLCICHrLHHIHHFS-HVAILQRGRVVEFGSIPVLLSDPLSAL 214
                  566677778999**998666666668888888888887777777777789*******999999999.68899***********99988887765 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   3.9e-07   2.6e-05       2     194 ..       7     198 ..       6     210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.9e-07
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeite...pgpdrmv..vfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaa 194
                  ++++l++ kg  +++ig +g gks+l+  +  + + ++g ++++g++ +    p   + +  + q+  l+  +tvre +   v    + +    +r  ++ +i+ + +r  +  r + ls g    + +aral     ++l de   ++d  t   + + +l +   ++vtvl + h +     +s  v +l  g   
  MMETSP1174-20130828|13327_1   7 RGLSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYR-STGHLTVQGEDWKSmrlPRLRKAIrlIPQEPQLF-GHTVREALCGPVSFEDEAVWMVLNRVGLHTRIARLPMRLDTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL---SNVTVLCICHRLHHIHHFS-HVAILQRGRVV 198
                  6789***********************99999987.5699999998766511144444332145666665.579*********9999999999999999***********************************999*************99988777766655...6789999999887655554.35555555555 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06   0.00022     958    1146 ..      18     206 ..       5     213 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
    TIGR01257  958 itaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhk.........rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgt.plf 1146
                     a++g  g+gk++ +s l  +   t g + v g+d +   l  +r+++ + pq   lf h tv e +         s+e+  + m  +l+  glh +                ls g    l +a a++  a v++ de +s vd  +   i +l+l   s  t++   h +     +  ++ai+ +gr+   g+ p++
  MMETSP1174-20130828|13327_1   18 KVAIIGRTGSGKSSLFSALLRFYRST-GHLTVQGEDWKsMRLPRLRKAIRLIPQEPQLFGH-TVREALCGPV-----SFEDEAVWM--VLNRVGLHTRiarlpmrldTPMRQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLATELRIMNLILSL-SNVTVLCICHRLHHIHHF-SHVAILQRGRVVEFGSiPVL 206 
                   5799*************999988765.778888888762589*****************99.7888776544.....444433333..4555666654111111000334455799999999***********************************986.778888889999888776.57999999998765532555 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-05   0.00089     208     234 ..      15      41 ..       7      44 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-05
    TIGR00450 208 dglklaivGktNvGKSSLlNallkkdr 234
                  +g k+ai+G+t  GKSSL+ all+  r
  MMETSP1174-20130828|13327_1  15 KGSKVAIIGRTGSGKSSLFSALLRFYR 41 
                  899*******************98655 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-05    0.0017     360     504 ..       9     157 ..       2     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.5e-05
    TIGR01194 360 idlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat..tylsrleledkvkvedlnyst...ttdlstGqrkrlalvnayleerpvllldewaadqdpaf 504
                  + l + +G  v i+G  G Gks+l   ll +y+   G+l ++Ge   +      r+    +  +  lf + v        s ++      l+r++l+ ++    +   t     +ls G+   l l  a l    v+l de ++  d a 
  MMETSP1174-20130828|13327_1   9 LSLDVVKGSKVAIIGRTGSGKSSLFSALLRFYRS-TGHLTVQGEDWKSMRLPRLRKAIRLIPQEPQLFGHTVREALCGPVSFEDEAvwMVLNRVGLHTRIARLPMRLDTpmrQGSLSQGEAMLLCLARALLHPAAVMLCDEVSSSVDLAT 157
                  679999**************************96.7*********99999999999999999999***9999977766677655441246899999999987666665422256899999999999999999999999999988887665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.2e-05    0.0029     176     199 ..      17      40 ..      10      44 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.2e-05
    TIGR03594 176 ikiaiiGrpNvGKStLvNallgee 199
                   k+aiiGr  +GKS+L  all+  
  MMETSP1174-20130828|13327_1  17 SKVAIIGRTGSGKSSLFSALLRFY 40 
                  578888888888888888887655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.3e-05    0.0043       3      32 ..      16      45 ..      14      57 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.3e-05
    TIGR00231  3 eikivivGhvdvGKstLlnsllknkisite 32
                   k++i+G+ ++GKs+L++ ll+ ++s   
  MMETSP1174-20130828|13327_1 16 GSKVAIIGRTGSGKSSLFSALLRFYRSTGH 45
                 579******************998866554 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.47        32     786     809 ..      13      36 ..       2      52 .. 0.64
   2 ?    9.2   0.1    0.0006     0.041     919     988 ..     139     203 ..     131     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.47
    TIGR00956 786 vkPGkltALmGasGAGkttLlnvL 809
                  v+ G+  A++G  G Gk  L+ +L
  MMETSP1174-20130828|13327_1  13 VVKGSKVAIIGRTGSGKSSLFSAL 36 
                  444555666666666666666665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0006
    TIGR00956 919 kPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdl 988
                  +P+ ++  De  s +D  t   i++l+  l++   ++lC  H      +++F ++ +lq+G ++v fG +
  MMETSP1174-20130828|13327_1 139 HPAAVMLCDEVSSSVDLATELRIMNLILSLSNV--TVLCICHR--LHHIHHFSHVAILQRG-RVVEFGSI 203
                  6999999********************999996..9******8..56679**********9.9***9986 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00099     0.068     154     176 ..      21      43 ..      12      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00099
    TIGR02525 154 icGetGsGkstllaaiyryilet 176
                  i G tGsGks+l +a+ r++  t
  MMETSP1174-20130828|13327_1  21 IIGRTGSGKSSLFSALLRFYRST 43 
                  78*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                       112  (0.0273038); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 0.99u 0.21s 00:00:01.20 Elapsed: 00:00:00.84
# Mc/sec: 356.68
//
Query:       MMETSP1174-20130828|13325_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 811.93
//
Query:       MMETSP1174-20130828|13330_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 971.30
//
Query:       MMETSP1174-20130828|13332_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 808.43
//
Query:       MMETSP1174-20130828|13333_1  [L=848]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.17s 00:00:00.72 Elapsed: 00:00:00.62
# Mc/sec: 1805.27
//
Query:       MMETSP1174-20130828|13334_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 239.98
//
Query:       MMETSP1174-20130828|13331_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.65
# Mc/sec: 1216.33
//
Query:       MMETSP1174-20130828|13335_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:01.00
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|13338_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.85
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|13340_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 438.54
//
Query:       MMETSP1174-20130828|13342_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   13.5   0.0     0.0033   13.2   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     8e-07    0.0033     429     502 ..     118     191 ..     110     207 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8e-07
    TIGR02917 429 ellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAl 502
                  e l+  l L++++   +++d a+  +++ ++++ d a+ +n ++ i+  ++++++  ++ ek Lk++p +f A 
  MMETSP1174-20130828|13342_1 118 EILDTSLYLAENFDNPRQLDVAVEKLDAIIAEYSDWAEPINQRATILYLQGKYEESIASCEKVLKLKPWHFGAC 191
                  55566677777777777888888888888888888888888888888888888888888888888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 755.94
//
Query:       MMETSP1174-20130828|13345_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1190.65
//
Query:       MMETSP1174-20130828|13349_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|13346_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-36  124.2  20.4      3e-13   47.7   0.5    4.8  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.5e-31  106.2  10.8    7.2e-24   81.5   3.7    2.9  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.1e-19   67.4  14.3    6.6e-06   23.7   3.4    6.0  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    8.1e-18   63.0   7.9    0.00032   19.1   0.1    5.9  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    5.4e-13   46.2   6.5    0.00017   18.1   1.1    3.1  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    4.8e-09   32.8  11.0    3.4e-05   20.1   2.3    2.3  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.4   2.2e-10   1.5e-07      51     107 ..       2      58 ..       1      60 [. 0.94
   2 !   47.7   0.5   4.3e-16     3e-13      37     128 ..      56     147 ..      56     151 .. 0.95
   3 !   31.0   0.0   5.6e-11   3.8e-08      32     130 ..     153     251 ..     146     254 .. 0.91
   4 !   31.7   3.4   3.3e-11   2.3e-08      56     128 ..     245     317 ..     244     340 .. 0.90
   5 ?    0.6   0.0      0.11        74      46      63 ..     320     337 ..     318     365 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.2e-10
    TIGR02521  51 kenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGt 107
                   ++   A+ + p++ada+  l+++++++g+l++A e++++A++ k++ +d+lNN G+
  MMETSP1174-20130828|13346_1   2 IRSYRAAVSYVPSYADAYYNLGIALKTTGRLDEAIEEYENAIRYKEDHADALNNLGV 58 
                  566778************************************************995 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 4.3e-16
    TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                  L++++ e+g +++A e    A+ ++p+ ++a+  lA ++q+lg+l++A ++++ A+t +++++d+ NN G+ L + +++++A++ +++Ai +
  MMETSP1174-20130828|13346_1  56 LGVAWEEKGFVDTAVECYRSAMRVKPEHSEAHCNLADALQSLGKLDEAVKEYQIAITYNEKDADAINNMGVALEALGNIDQAIAAYTNAIGQ 147
                  677788899999*****************************************************************************976 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 5.6e-11
    TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpk 130
                  +++ +La +  ++g l  A +   + ++  p++ +++++l+ ++   +e e+  + +r Al+  p ++   NN G  L ++++++eA++++eaAi++++
  MMETSP1174-20130828|13346_1 153 DAHCNLADALHARGRLGPAIAVYRTIIQNRPDEGNVYSSLGNALHANKEIEESIKVYRIALKKVPVDYVTCNNLGIALQSTGNVDEAIRMYEAAIRTNA 251
                  56777888888888999999999999*********************************************************************9875 PP

  == domain 4    score: 31.7 bits;  conditional E-value: 3.3e-11
    TIGR02521  56 kAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                   A+  ++k+a a+  l++++q++   +kA  ++++A++ +++ +d++NN G  L + + y++A++ +++A++ 
  MMETSP1174-20130828|13346_1 245 AAIRTNAKYAIAHYNLGVALQSMDLCSKAILAYQNAVRCEEDYPDAYNNLGYALMSLGSYDKAIAAYTQALRC 317
                  79********************************************************************974 PP

  == domain 5    score: 0.6 bits;  conditional E-value: 0.11
    TIGR02521  46 dlekAkenlekAleldpk 63 
                  d+++Ak+nl kAl ++ +
  MMETSP1174-20130828|13346_1 320 DFTSAKDNLAKALRMKNE 337
                  678999999999988765 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   3.7   1.1e-26   7.2e-24     418     665 ..       3     250 ..       1     257 [. 0.93
   2 !   33.0   0.8   4.7e-12   3.2e-09     403     509 ..     226     332 ..     223     342 .. 0.63

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 1.1e-26
    TIGR02917 418 adLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelk 665
                   + ++Av   p   +a   L ++   +g++d a+   ++ +  ++d a   n lg +   k+  + A e ++ A+ ++p++  A  nLA+   + +++d+A+++++ +++++ k+ +a++++    ++ gn ++a+a +++a+ + ++      +La ++ + g+l  a+a+ +++ ++ pd+ ++++ lg+a+ a+k+ ++ +++++ +l+  p   +    l  + ++  n+++A++ +++a+  +
  MMETSP1174-20130828|13346_1   3 RSYRAAVSYVPSYADAYYNLGIALKTTGRLDEAIEEYENAIRYKEDHADALNNLGVAWEEKGFVDTAVECYRSAMRVKPEHSEAHCNLADALQSLGKLDEAVKEYQIAITYNEKDADAINNMGVALEALGNIDQAIAAYTNAIGQKSDHWDAHCNLADALHARGRLGPAIAVYRTIIQNRPDEGNVYSSLGNALHANKEIEESIKVYRIALKKVPVDYVTCNNLGIALQSTGNVDEAIRMYEAAIRTN 250
                  55566666666666666666666667899********************************************************************************************98888888******************************************************************************************************************99876 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 4.7e-12
    TIGR02917 403 lgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArld 509
                  lgi   ++G++ eai   e+A++++ +   a+  L ++        ka+ a ++    ++d +  yn lg++++  + ++kA +a+ +AL   pdf +A  nLA+  
  MMETSP1174-20130828|13346_1 226 LGIALQSTGNVDEAIRMYEAAIRTNAKYAIAHYNLGVALQSMDLCSKAILAYQNAVRCEEDYPDAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAKDNLAKAL 332
                  45555566777777777777777776666666666554444444567777777777777777777777777777777777777777777777777777777777643 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     1e-05    0.0068      49     121 ..      13      85 ..       1      88 [. 0.84
   2 !   23.3   0.5   1.3e-08   8.7e-06      31     114 ..      63     146 ..      56     162 .. 0.78
   3 !   21.9   0.1   3.5e-08   2.4e-05      31     113 ..      97     179 ..      89     186 .. 0.89
   4 !    8.2   0.0   0.00062      0.43      28      80 ..     162     214 ..     156     219 .. 0.78
   5 !   23.7   3.4   9.7e-09   6.6e-06      29     124 ..     231     326 ..     225     338 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1e-05
    TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekee 121
                  p  a+  + L+ +l+ +++ +eAi+ Y+ a   ++d+++++  +++   ++g    A ++ + a++++ e +e
  MMETSP1174-20130828|13346_1  13 PSYADAYYNLGIALKTTGRLDEAIEEYENAIRYKEDHADALNNLGVAWEEKGFVDTAVECYRSAMRVKPEHSE 85 
                  5556777888999999999999999999999999999999999999999999999999999999998887664 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 1.3e-08
    TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                  +g +++A++ ++  + + p  ++ +  La +lq l++ +eA++ Y++a + +++d++++   ++ l alg+  +A +a   ai 
  MMETSP1174-20130828|13346_1  63 KGFVDTAVECYRSAMRVKPEHSEAHCNLADALQSLGKLDEAVKEYQIAITYNEKDADAINNMGVALEALGNIDQAIAAYTNAIG 146
                  566778888888888888888888888888888888888888888888888888888888888888888888888888777664 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 3.5e-08
    TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                   gk++eA+k +q+ ++++  +a+ +  ++++l al++ ++AiaaY+ a   + d+ +++  +a+ l a g+   A +  ++ i
  MMETSP1174-20130828|13346_1  97 LGKLDEAVKEYQIAITYNEKDADAINNMGVALEALGNIDQAIAAYTNAIGQKSDHWDAHCNLADALHARGRLGPAIAVYRTII 179
                  599************************************************************99999988887777666665 PP

  == domain 4    score: 8.2 bits;  conditional E-value: 0.00062
    TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaa 80 
                  l ++g++  A  +++  ++  p e +   +L+ +l+a ke ee i+ Y +a++
  MMETSP1174-20130828|13346_1 162 LHARGRLGPAIAVYRTIIQNRPDEGNVYSSLGNALHANKEIEESIKVYRIALK 214
                  55678888888888888888888888888888888888888888888888865 PP

  == domain 5    score: 23.7 bits;  conditional E-value: 9.7e-09
    TIGR02552  29 yqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyse 124
                   ++g+++eA +++++ +  ++  a  ++ L+++lq ++  ++Ai aY+ a+ +++d p+++  ++  l+ lg + +A +a   a++   + ++ ++
  MMETSP1174-20130828|13346_1 231 QSTGNVDEAIRMYEAAIRTNAKYAIAHYNLGVALQSMDLCSKAILAYQNAVRCEEDYPDAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAKD 326
                  5789****************************************************************************9999998776555554 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   4.7e-07   0.00032      38     112 ..      15      86 ..       2      89 .. 0.87
   2 !   17.1   0.2     2e-06    0.0013      39     101 ..      84     143 ..      79     150 .. 0.91
   3 !    9.0   0.0   0.00064      0.44      20     102 ..     170     246 ..     153     253 .. 0.77
   4 !   15.9   0.5   4.6e-06    0.0032      37     113 ..     252     325 ..     238     327 .. 0.87
   5 !   11.5   0.1   0.00011     0.076      39      82 ..     288     331 ..     283     345 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 4.7e-07
    TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaa 112
                   ++A+Y lG al +++ +++A+++++++++    +e  +dal +lg++ +e g  ++A + ++  ++  P+ s+a
  MMETSP1174-20130828|13346_1  15 YADAYYNLGIALKTTGRLDEAIEEYENAIRY---KEDHADALNNLGVAWEEKGFVDTAVECYRSAMRVKPEHSEA 86 
                  68***************************93...34468********************9999877776666665 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2e-06
    TIGR02795  39 pnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqe 101
                   +A+  l+ al + +k+++A k+++ +++    +ek +da+ ++g++l++lg+ ++A + +++
  MMETSP1174-20130828|13346_1  84 SEAHCNLADALQSLGKLDEAVKEYQIAIT---YNEKDADAINNMGVALEALGNIDQAIAAYTN 143
                  689999**********************9...567889********************99976 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00064
    TIGR02795  20 kAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqev 102
                   A++ +++ +++ P++   +n +  lG+al a+k++++++k ++ ++kk p +  + ++   lg +lq +g+ ++A ++++  
  MMETSP1174-20130828|13346_1 170 PAIAVYRTIIQNRPDE---GNVYSSLGNALHANKEIEESIKVYRIALKKVPVDYVTCNN---LGIALQSTGNVDEAIRMYEAA 246
                  5556666666665554...44445699*********************99999988875...699999999999999999865 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 4.6e-06
    TIGR02795  37 lapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaak 113
                  + + A+Y lG al +   +++A+ a++++v+    +e  pda  +lg +l  lg  +kA + +++  +  P+ ++ak
  MMETSP1174-20130828|13346_1 252 KYAIAHYNLGVALQSMDLCSKAILAYQNAVR---CEEDYPDAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAK 325
                  5567**************************9...56778************************99887777766665 PP

  == domain 5    score: 11.5 bits;  conditional E-value: 0.00011
    TIGR02795  39 pnAqYwlGealyakkkykdAakaflevvkkypksekapdallkl 82 
                  p+A+  lG al++ + y++A++a+ ++++  p+ + a d+l k 
  MMETSP1174-20130828|13346_1 288 PDAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAKDNLAKA 331
                  899999*******************************9999875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2     3e-07   0.00021     390     503 ..       7     121 ..       2     129 .. 0.84
   2 !   10.5   0.0   5.3e-05     0.036     412     494 ..     131     213 ..     128     217 .. 0.96
   3 !   18.1   1.1   2.5e-07   0.00017     107     199 ..     233     327 ..     225     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3e-07
    TIGR00990 390 kalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaiel.ekelkpi 503
                  +a+   +  +d yy  +      g  +ea  +y+ +i    d+  +   l+v    +g ++ +   +r a++  pe  + +   a+ l    k+dea++++ +ai   ek+ ++i
  MMETSP1174-20130828|13346_1   7 AAVSYVPSYADAYYNLGIALKTTGRLDEAIEEYENAIRYKEDHADALNNLGVAWEEKGFVDTAVECYRSAMRVKPEHSEAHCNLADALQSLGKLDEAVKEYQIAITYnEKDADAI 121
                  6666667778888888888888899999999999999999999999999999999999999999999999999999999999999999999999999999999998735556655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 5.3e-05
    TIGR00990 412 kgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlai 494
                  +g+ ++a   y  +i   +d+  ++  la   +  g++  + a++r  +++ p+  +vy   ++ l  +++ +e+++ + +a+
  MMETSP1174-20130828|13346_1 131 LGNIDQAIAAYTNAIGQKSDHWDAHCNLADALHARGRLGPAIAVYRTIIQNRPDEGNVYSSLGNALHANKEIEESIKVYRIAL 213
                  6899***************************************************************************9986 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.5e-07
    TIGR00990 107 lpeidessvv.nlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnr 199
                   +++de+ ++ + +     kya++  ++G          kai  y+ a+ + ed P  y n+     +l+ ++k ++  t+al+  pd++ a   
  MMETSP1174-20130828|13346_1 233 TGNVDEAIRMyEAAIRTNAKYAIAHYNLGVALQSMDLCSKAILAYQNAVRCEEDyPDAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAKDN 327
                  556666544413334566799999999999988888899*************99899*******************************9877655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.6   8.6e-08   5.9e-05      66     209 ..      29     176 ..      24     185 .. 0.93
   2 !   20.1   2.3     5e-08   3.4e-05      33     242 ..     166     382 ..     163     389 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.6e-08
    TIGR03939  66 agedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt...rlgapalaar 209
                   g+ +e+i+ ye++ ++++  a++l++l+ A  +++  d+A+e yr++ + +P+  ++   la +l   gk +eA k+ + +   +++da+  ++ + +l+a+++  +a+aa+++a+  + d  ++  +l ++l    rlg ++++ r
  MMETSP1174-20130828|13346_1  29 TGRLDEAIEEYENAiRYKEDHADALNNLGVAWEEKGFVDTAVECYRSAMRVKPEHSEAHCNLADALQSLGKLDEAVKEYQIAITYNEKDADAINNMGVALEALGNIDQAIAAYTNAIGQKSDHWDAHCNLADALHargRLGPAIAVYR 176
                  58999********99*********************9*******************************************9999999***********************************99999999999988777877776655 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 5e-08
    TIGR03939  33 GdlaealslLqklyrktkldkkvldDllavlsWagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPkn..pdlllGlaltlada.gkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt......rlgapalaarlakqhpelftdeekrrleldqaaelvrlgekas 242
                  G l +a+ + ++  ++++++ +v++ l   l  + e +e i+vy+ + + v++   + ++l+ A+ + ++ d+A+ +y+ +++ + k   + + lG+al + d  +k   A +++ + +e +p   + +++l+Y+l +++ + +a+aa++qalr  Pd + +  +l ++l+      +   + l +r    h + + ++++++l ++  +el+r +  ++
  MMETSP1174-20130828|13346_1 166 GRLGPAIAVYRTIIQNRPDEGNVYSSLGNALHANKEIEESIKVYRIAlKKVPVDYVTCNNLGIALQSTGNVDEAIRMYEAAIRTNAKYaiAHYNLGVALQSMDLcSKAILAYQNAVRCEEDYP---DAYNNLGYALMSLGSYDKAIAAYTQALRCRPDFTSAKDNLAKALRmknegdDYTGSNLSQRKGHHHQQQQLPNKNNDLSAQIKTELMRDDTRQN 382
                  8889999999999999998888888888888888899999****999999999999**************************99998722578999999999972455578888888888888...788999**************************************98855555555556666666667777778888888888888888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.87
# Mc/sec: 672.08
//
Query:       MMETSP1174-20130828|13352_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 504.66
//
Query:       MMETSP1174-20130828|13348_1  [L=1366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.17s 00:00:00.93 Elapsed: 00:00:00.70
# Mc/sec: 2575.67
//
Query:       MMETSP1174-20130828|13356_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1675.25
//
Query:       MMETSP1174-20130828|13351_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.16s 00:00:00.78 Elapsed: 00:00:00.59
# Mc/sec: 2234.87
//
Query:       MMETSP1174-20130828|13355_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 701.50
//
Query:       MMETSP1174-20130828|13359_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 201.46
//
Query:       MMETSP1174-20130828|13362_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1169.70
//
Query:       MMETSP1174-20130828|13364_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|13365_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|13363_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 855.93
//
Query:       MMETSP1174-20130828|13366_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   13.6   0.0        1.9    5.0   0.0    2.8  3  TIGR03314 Se_ssnA: putative selenium metabolism protein SsnA


Domain annotation for each model (and alignments):
>> TIGR03314  Se_ssnA: putative selenium metabolism protein SsnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.014        56     364     394 ..      26      56 ..      24      59 .. 0.91
   2 !    5.0   0.0   0.00047       1.9     366     394 ..      63      91 ..      59      94 .. 0.91
   3 !    4.6   0.0   0.00065       2.7     365     394 ..      97     126 ..      95     134 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.014
    TIGR03314 364 vleagakadliivdynaPtPlakdnlaghil 394
                  +le g k dl   d  + tP++   l+gh+l
  MMETSP1174-20130828|13366_1  26 LLEVGSKEDLSETDDYGKTPMHFACLEGHLL 56 
                  589999*******999*************98 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00047
    TIGR03314 366 eagakadliivdynaPtPlakdnlaghil 394
                  e g + d+  vd n+ tP++   l+gh+l
  MMETSP1174-20130828|13366_1  63 EMGETVDICAVDNNGDTPMHFACLKGHLL 91 
                  678999*********************98 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.00065
    TIGR03314 365 leagakadliivdynaPtPlakdnlaghil 394
                  le ga+ d+   d n+ tP+    ++gh+l
  MMETSP1174-20130828|13366_1  97 LEVGAADDISNTDDNGATPMLLACMNGHLL 126
                  899*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|13367_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.72
# Mc/sec: 1032.08
//
Query:       MMETSP1174-20130828|13374_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 473.81
//
Query:       MMETSP1174-20130828|13375_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   17.0   0.1       0.02   13.1   0.0    2.8  3  TIGR00988 hip: integration host factor, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00988  hip: integration host factor, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.062   2.6e+02      18      56 ..      11      50 ..       2      64 .. 0.73
   2 !   13.1   0.0   4.9e-06      0.02      15      59 ..     102     148 ..      95     162 .. 0.83
   3 ?   -2.5   0.0      0.35   1.4e+03       9      26 ..     439     456 ..     421     469 .. 0.54

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.062
    TIGR00988 18 sakdv.ekavktlleelaealarGdrieirGfGsfslkkr 56
                 + k+v +++ k l   + ++l   + ++i  fG f+l k 
  MMETSP1174-20130828|13375_1 11 FDKEViQRIWKVLCGYINDTLLMSKGLKIPHFGNFTLIKS 50
                 5566514455666678899999999999*******98765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.9e-06
    TIGR00988  15 shlsakdvekavktlleelaealarGd..rieirGfGsfslkkraar 59 
                  +++ + + +++++ ++  l ea+a G+  ri++   G+f+++kr++ 
  MMETSP1174-20130828|13375_1 102 GNVDKDTAQNILQGMIRSLGEAIASGQavRIQFESIGAFTVQKREPT 148
                  556677788999*************9844667789*********985 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.35
    TIGR00988   9 riateqshlsakdvekav 26 
                   ia+++ +  a+ +e+  
  MMETSP1174-20130828|13375_1 439 TIAHHEKQREARIMENLK 456
                  334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.60
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|13379_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-31  106.1   1.0    7.5e-31  105.1   0.7    1.4  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    7.4e-07   26.7   0.3     0.0048   14.2   0.0    2.3  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    0.00072   16.7   0.4     0.0015   15.6   0.3    1.4  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.019   12.6   0.3      0.043   11.5   0.2    1.5  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.028   12.0   0.1      0.065   10.8   0.1    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.7   9.1e-34   7.5e-31       5     219 ..       3     238 ..       2     249 .. 0.77

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 9.1e-34
    TIGR02475   5 pvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilka.cgieacsee..eivelanGcicctvaddflptlekllaree.eldhilietsGlalpkplvqafqwpeirsrvtvdg...vvavvdsaavaaGrfaedl.........daleaqraadenldhespleelfed....qlacadlvilnkadlldaa.glekvraeiaeelpravkiveaeeGevdae 219
                  p+tvv+GflGaGkttl+++ll n++G +i v+vn+   l id  +++     e  +      vel nGc+cc++ d++  ++  llar     dhi+ie+sG++ p  + ++++      + t  g   +v+v+d++a+    ++ d+         d+ ++  +  ++++  s l+ l  d    ql +ad+v+lnk dll +  ++ ++++ +++  p   +i+ +++ ev+++
  MMETSP1174-20130828|13379_1   3 PITVVSGFLGAGKTTLLKNLLLNTAGLKIGVLVNDVAALNIDAMLIAReLPNEDGDGSsiGTVELGNGCVCCSLRDELAEAVAALLARGPgCWDHIVIEASGVSEPAAIRATLERLRRSMQTTSFGavqIVTVADTPALPHAFVSFDTlienralalDEFQSVYELAAAMQSSSSLQRLVVDvlveQLEAADVVLLNKVDLLPPGvDVGQIERLVQALNPEVRRILPCTRCEVPPH 238
                  99****************************************99876415555555553467*************************965168*************99988887665554555433222799******99887776532222121114444444556677888777765443333399**************8852677888888888888888999988888765 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   8.8e-05     0.072      38      73 ..      10      45 ..       4      75 .. 0.83
   2 !   14.2   0.0   5.8e-06    0.0048     155     194 ..     190     228 ..     184     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.8e-05
    TIGR00073 38 siGsGktlllekliealkkevkiavieGDlit.kaDa 73
                   G+Gkt+ll++l+ ++   +ki+v++ D+++ + Da
  MMETSP1174-20130828|13379_1 10 FLGAGKTTLLKNLLLNTAG-LKIGVLVNDVAAlNIDA 45
                 47************99988.9********98734455 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.8e-06
    TIGR00073 155 fkeadlilinkvdlveavdadvekvkadvkkinPeveiil 194
                  +++ad++l+nkvdl++  ++dv +++  v+ +nPev+ il
  MMETSP1174-20130828|13379_1 190 LEAADVVLLNKVDLLPP-GVDVGQIERLVQALNPEVRRIL 228
                  689************96.9****************98665 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.8e-06    0.0015     182     222 ..       6      46 ..       4      70 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.8e-06
    TIGR03819 182 lvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdhp 222
                  +vsG  G+GkttLL  lL + a  +  vlv+d+a l++d  
  MMETSP1174-20130828|13379_1   6 VVSGFLGAGKTTLLKNLLLNTAGLKIGVLVNDVAALNIDAM 46 
                  79***********************9**********99854 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.3e-05     0.043      24      45 ..       4      25 ..       2      34 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-05
    TIGR00150 24 vvlLkGdlGaGKttlvkgllkg 45
                 + +++G lGaGKttl+k ll +
  MMETSP1174-20130828|13379_1  4 ITVVSGFLGAGKTTLLKNLLLN 25
                 56889************98754 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.9e-05     0.065       7      29 ..       6      27 ..       3      45 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.9e-05
    TIGR00231  7 vivGhvdvGKstLlnsllknkis 29
                 v+ G+ ++GK+tLl++ll n+ +
  MMETSP1174-20130828|13379_1  6 VVSGFLGAGKTTLLKNLLLNT-A 27
                 566999*************98.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.83
# Mc/sec: 720.37
//
Query:       MMETSP1174-20130828|13377_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 833.62
//
Query:       MMETSP1174-20130828|13380_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 996.30
//
Query:       MMETSP1174-20130828|13381_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-08   30.8   0.0    2.8e-08   30.5   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      7e-08   29.5   0.0    9.2e-08   29.1   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    0.00093   16.2   0.0     0.0013   15.8   0.0    1.1  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     2e-11   2.8e-08      24      74 ..      70     120 ..      63     151 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 2e-11
    TIGR01389  24 evldgrdvlavlPtGGGkslCYqvPaLllkgltvvisPLisLmkDqvdqLr 74 
                  ++++gr++++ lPtG Gksl +    + +  +t+v+ PLi+L++Dq + + 
  MMETSP1174-20130828|13381_1  70 SLVRGRSTFVHLPTGSGKSLVWLPTKMGRVVVTIVVFPLIALLRDQFHRIM 120
                  6899****************996556668899**************98765 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   6.8e-11   9.2e-08      22      74 ..      70     122 ..      62     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 6.8e-11
    TIGR00614  22 avlegrdalvvmatGgGksLCyqlpavvsdgltlvisPLisLmeDqvlqLkas 74 
                  + ++gr ++v ++tG GksL +  + +    +t+v+ PLi+L++Dq +++ + 
  MMETSP1174-20130828|13381_1  70 SLVRGRSTFVHLPTGSGKSLVWLPTKMGRVVVTIVVFPLIALLRDQFHRIMKI 122
                  66899*****************988899999***************9887655 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.3e-07    0.0013      19      67 ..      79     125 ..      70     143 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.3e-07
    TIGR03158  19 ntAptGaGKtlaalvevlseeldtialyPtNaLiedqekaikelvdvlk 67 
                     ptG+GK+l +l   +   + ti ++P  aL +dq + i ++   ++
  MMETSP1174-20130828|13381_1  79 VHLPTGSGKSLVWLPTKMGRVVVTIVVFPLIALLRDQFHRIMKIE--FD 125
                  5679**********9999999999**************9998765..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 749.23
//
Query:       MMETSP1174-20130828|13383_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   13.1   0.0     0.0097   12.8   0.0    1.1  1  TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)


Domain annotation for each model (and alignments):
>> TIGR01892  AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.4e-06    0.0097     177     286 ..      20     130 ..       9     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.4e-06
    TIGR01892 177 rGreghssrpdrGvsaielaakllarlvaladklkredleeaFtppyatlni.GtvkGGkavniiaaaCelvlelRpipGmdpeellallekiaeevkekap.gfevkveel 286
                  rG  +h+s+p rG    ++++++++ +++ + kl+re+le  F+       +  ++   k      +aC ++   R +p  +  + +++l+++ + ++e+++ +fe  +  +
  MMETSP1174-20130828|13383_1  20 RGYGAHASTPRRGEKESHRVTEAMETMEQ-RFKLEREELERRFKEATCQAMLrYEISPAKLAQPCLTACDVIQKGRKVPPRQRRKASSKLSEAHALLQEETLdEFEGMMADV 130
                  7999********************99876.789**********876654444168999998888889999999999999999999999999999887776652444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 737.59
//
Query:       MMETSP1174-20130828|13384_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 988.23
//
Query:       MMETSP1174-20130828|13386_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1174-20130828|13387_1  [L=1142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-22   77.2   0.0      2e-22   76.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0047   14.2   0.0     0.0088   13.4   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   9.6e-26     2e-22      17     235 ..      70     278 ..      55     290 .. 0.83

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 9.6e-26
    TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaa 235
                     +l +    ei++    +h niv L    ++    ++ v e+ +G  l + + ++G L+    ++ m     +l    ++ ++hRD+kPqn++++aa ++ + k+ DFG +  L++g           +  + GsP Y aPe L g    ak+Dl++ G +++e L G++   G s+++ l+ ++  +++ lP  ++  p    L + l k++ ++ a
  MMETSP1174-20130828|13387_1  70 LSSKLLQNLESEISILRDFQHVNIVCLEGIRKTSS-HIYLVLEFCAGGDLHKYIRSKGRLSERVASHFMRHLAFGLEFLWRRQLIHRDIKPQNLLLTAASDSATLKIADFGFARsLGAGKM---------ADTMCGSPLYMAPEILSGQKYDAKADLWSAGTVLFEMLAGQPPY-GGSTQHELMDNIRRKELRLPRGVNIAPPCVTLIQMLLKRMPEKRA 278
                  56678888999***************988888887.9**************************************************************************9861444433.........35699************************************765.55667778899999******9999777666665555555444444 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.3e-06    0.0088      68     169 ..     102     218 ..      61     228 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.3e-06
    TIGR03724  68 dpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk....skevedkavDlhvlkrslestheelaeelie 169
                  + ++  +v+e   g +l++++++k         +++++++  +  l + +++h D+ ++N++++    + +l + DfG ++     +      +  l++  ++l++ +++ + +l++
  MMETSP1174-20130828|13387_1 102 TSSHIYLVLEFCAGGDLHKYIRSKGRlservasHFMRHLAFGLEFLWRRQLIHRDIKPQNLLLTaasdSATLKIADFGFARSlgagKMADTMCGSPLYMAPEILSGQKYDAKADLWS 218
                  455677899999999999999998778888999999***************************756545677899***988755445555555666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.57
# Mc/sec: 2598.82
//
Query:       MMETSP1174-20130828|13390_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.4   4.5    0.00018   18.7   3.1    1.3  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.1   4.5e-08   0.00018       8      72 ..     133     197 ..     127     206 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.5e-08
    TIGR00599   8 dssDwldtklpsLapldtslRChvCkdffkaPvltsCsHt.FCslCiRrcLseepkCPlCraedqE 72 
                  +s D ++t+++ +  +d s  C +C d  k+ v   C+H   C  C  +   + +kCPlCr + q 
  MMETSP1174-20130828|13390_1 133 TSDDSKSTSISEI-VVDVSDLCIICFDNSKNSVFLECGHGgVCYHCAVNTCVVSSKCPLCRETIQQ 197
                  6778888888776.4899999******************648****999999*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 838.31
//
Query:       MMETSP1174-20130828|13391_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|13393_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1323.66
//
Query:       MMETSP1174-20130828|13395_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 512.87
//
Query:       MMETSP1174-20130828|13396_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|13397_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       768  (0.187226); expected 82.0 (0.02)
Passed bias filter:                      246  (0.0599707); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1174-20130828|13400_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 456.61
//
Query:       MMETSP1174-20130828|13399_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-24   83.5  10.4    3.6e-24   83.0   7.2    1.2  1  TIGR00831 a_cpa1: Na+/H+ antiporter
    1.9e-23   80.5   2.2    2.7e-23   80.0   1.5    1.2  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
     0.0028   15.3   0.0     0.0074   13.9   0.0    1.7  1  TIGR03697 NtcA_cyano: global nitrogen regulator NtcA


Domain annotation for each model (and alignments):
>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   7.2   2.6e-27   3.6e-24     176     418 ..       4     232 ..       1     279 [. 0.79

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 2.6e-27
    TIGR00831 176 veFvvvavGGilaGlvvgyLvtrllrakiDepleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvqlpgiiesalkeaevapaaeilalavtavviyaalayvrfltvlkktsnrvlkkktrevGtreklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavviLfsllvqgvsLpilvkrkevaedsereke 418
                    F +  +GGil G++ g+L    l    +++ +ei ++++++f  f++ e  k sGv+a va gl ++ +G+  +i+++   ++  fW++  +l n+ivfv+ Gv    ++e  +     +++++ + l    +v+y  l  +r ++ l  +   vl      +  +  +   ++GlRGa+ l +aL +   +    +   r + +fl++++  ++ll++g+s   +++++ ++  s+  +e
  MMETSP1174-20130828|13399_1   4 QYFFQLSLGGILFGVLFGFLSVLCLAYIHNDAPTEITVTIVAAFGVFIVSEAYKTSGVLALVALGLFMSAYGRL-RIEPQVEHIMGHFWELCGYLANTIVFVMSGVI---VVERGIS---DQIEVKDWFL---LIVLYIILHVIRTTMLL--ILAPVLGWLGYGMDRKTGVALAYGGLRGAVGLTLALIIEEDVDIDESI--RSKSMFLMSGIAFMTLLINGTSFGYVMQKIGLTTISDATEE 232
                  5688999*************99766566677889***************************************9.9*****************************94...4444332...2344555666...56667777766663222..2233565555555555566679****************9998877765..68899************************999885555444 PP

>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   1.5     2e-26   2.7e-23     206     427 ..       5     234 ..       1     366 [. 0.81

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 2e-26
    TIGR00840 206 sffvvalggllvGvvvgflvalilkftkhirviepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvse.....neewnwafvvltlvfcviyRvlgvvtlsailnkfrkvkleikdqlvifyaGlRGAvafaLalllde.....kkveekklfvttvlvvvfltvilqGltikplvevLkvkk.kekskekl 427
                   ff ++lgg+l+Gv++gfl++l l ++++    e ++ ++ ++  ++++e  + Sg+lal++ g+ ++ Y +  i  + e  +  f  l   l++t++F+  Gv +v++      e  +w ++++  +++ + R   ++ l+ +l+      ++ k  + ++y+GlRGAv+++Lal+++e     + ++ k++f+ + +   f+t ++ G+    +++ + + + ++ ++e+ 
  MMETSP1174-20130828|13399_1   5 YFFQLSLGGILFGVLFGFLSVLCLAYIHNDAPTEITVTIVAAFGVFIVSEAYKTSGVLALVALGLFMSAYGRLRIEPQVEHIMGHFWELCGYLANTIVFVMSGVIVVERgisdqIEVKDWFLLIVLYIILHVIRTTMLLILAPVLGW-LGYGMDRKTGVALAYGGLRGAVGLTLALIIEEdvdidESIRSKSMFLMSGI--AFMTLLINGTSFGYVMQKIGLTTiSDATEESF 234
                  58999***************************************************************************************************9997522111344455555555566779999999999999985.5678999***********************983332246889999998875..699*************9887765223333333 PP

>> TIGR03697  NtcA_cyano: global nitrogen regulator NtcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.4e-06    0.0074      14     100 ..     613     695 ..     601     718 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.4e-06
    TIGR03697  14 vyllkkgavklsrvyeageeitvallrensvfgvlslitgkrsdrfyhavaftrvellavpieqvekaleedadlsllllqglssri 100
                    +++ g+v++    e ge++  a    ns++g l l+t +   r    +a   v     + e  +k + ++++l+l++ q+++  +
  MMETSP1174-20130828|13399_1 613 WIMIVSGTVRIVHKTEDGENVICANQGPNSMIGTLGLMTET--ARSASVIAHGCVRTYEWNGEASKKLMIAHPELALMMWQSVA--L 695
                  567899********************************975..56778999*****************************9986..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.64
# Mc/sec: 1870.53
//
Query:       MMETSP1174-20130828|13404_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|13402_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1072.41
//
Query:       MMETSP1174-20130828|13403_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 973.42
//
Query:       MMETSP1174-20130828|13407_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 860.20
//
Query:       MMETSP1174-20130828|13410_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|13412_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 778.74
//
Query:       MMETSP1174-20130828|13413_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 734.40
//
Query:       MMETSP1174-20130828|13411_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-38  128.3   0.0      1e-37  128.1   0.0    1.0  1  TIGR00435 cysS: cysteine--tRNA ligase
    4.4e-20   69.7   0.9    2.3e-17   60.7   0.1    2.3  3  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
    1.8e-05   21.5   0.0    2.8e-05   20.9   0.0    1.2  1  TIGR00398 metG: methionine--tRNA ligase
    2.9e-05   20.1   0.0    3.5e-05   19.8   0.0    1.1  1  TIGR00395 leuS_arch: leucine--tRNA ligase
    5.6e-05   19.3   0.0    7.5e-05   18.9   0.0    1.2  1  TIGR00392 ileS: isoleucine--tRNA ligase
     0.0029   13.6   0.0     0.0032   13.4   0.0    1.0  1  TIGR00396 leuS_bact: leucine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   1.5e-40     1e-37     223     463 ..       2     282 .]       1     282 [] 0.74

  Alignments for each domain:
  == domain 1    score: 128.1 bits;  conditional E-value: 1.5e-40
    TIGR00435 223 HsGGvDlifpHHeNEiaqsealf..dkqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdp...ralRllllsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksp...........lekefeaefvEaldddlntaealavlselvkksnlkeiskakaallieelialesvlekllglpsks.........vqagsnddelgeledliee..........rs.earkkke.........lkkaDkiR.dellkkgivLeDtpnG.tal 463
                  HsGG+Dl+fpHH NEiaqsea    d ++v  ++H+g+l++eg KmSKSl+Nf+t++dll+   p   +++R ++l  +yr+++ +se+ + +a+++   la+   +    la ++  +  ++            l  e + +++Eal +d +t++al  ++ lvk ++  +i + +   ++++  ++++ +++++gl++++                +e +e +++++           r+ +a+k+k          l++ D +R d l ++gi LeDt  G +++
  MMETSP1174-20130828|13411_1   2 HSGGIDLAFPHHCNEIAQSEAHRcgDDRWVRLWVHTGHLHVEGLKMSKSLKNFTTVRDLLRDGGPdvaMQFRIFCLAHKYRSNVSWSEDRMVQAEATRLSLARFTAMSGVALARDEDGGVLDNThwdqpqlhlfdLLSEVRLKVREALAHDWDTPTALREVMRLVKAVD-GYIGDGHSGPVLKSCVTFVHEITTIFGLSEQTnrketdshsR------HERSESDRIVNAladfrtqvrrRAiSAIKDKSqlegvpqelLRECDILRdDILPEHGISLEDTGAGgARW 282
                  ********************9743259**********************************765422379*********************9999766666555444444444333322222222344577788778899999999***********************.888888888888888888888888887777664433332221......233333333333555766675333134455558999999999*******6667899*******8885665 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   3.4e-20   2.3e-17     246     340 ..       3     101 ..       1     118 [. 0.83
   2 !    7.4   0.0   0.00051      0.35     359     391 ..     143     175 ..     127     198 .. 0.82
   3 ?   -3.5   0.0       1.1   7.3e+02     319     351 ..     209     242 ..     207     262 .. 0.66

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 3.4e-20
    TIGR03447 246 GGGsdlifPhhefsaahaeaa.tgeerlarhyvhagmigldGekmskskGnlvlvsklraaGeePaa..irlavlaghyredrewtdevlaeaee.rla 340
                   GG dl+fPhh    a++ea   g++r  r +vh+g + ++G kmsks+ n+  v  l ++G    a   r+  la+ yr++ +w+++ + +ae+ rl+
  MMETSP1174-20130828|13411_1   3 SGGIDLAFPHHCNEIAQSEAHrCGDDRWVRLWVHTGHLHVEGLKMSKSLKNFTTVRDLLRDGGPDVAmqFRIFCLAHKYRSNVSWSEDRMVQAEAtRLS 101
                  69*********999888888626899******************************9988887655511577778**************9999862554 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00051
    TIGR03447 359 aklreeladdldtpaalaavdewaaeakkeags 391
                   k+re+la+d dtp+al +v + +++++ + g+
  MMETSP1174-20130828|13411_1 143 LKVREALAHDWDTPTALREVMRLVKAVDGYIGD 175
                  589*****************9998887665554 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 1.1
    TIGR03447 319 ghyredrewtdevlae.aeerlarwraalaaeea 351
                   h r++r+ +d ++++ a+ r +  r a++a + 
  MMETSP1174-20130828|13411_1 209 SHSRHERSESDRIVNAlADFRTQVRRRAISAIKD 242
                  6888888888887765366677777777764333 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     4e-08   2.8e-05     316     455 ..      35     175 ..      28     183 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4e-08
    TIGR00398 316 vahgyltvegkkmSkSkgnvvdpedllarygadi...lRYyllkevplekDldfsledfvervNaelvnklgNllnRt.lgfikkyfegklksvkeaseedekllkkieealekideal.ekfefkkaleeilklvsegnklide 455
                  v +g+l veg kmSkS+ n+  + dll   g+d+   +R + l+  +  + +  s++++v+   + l  +l+ ++    +++++   +g+l+ ++  ++ + +l++ ++e   k+ eal + ++   al+e+++lv++   +i +
  MMETSP1174-20130828|13411_1  35 VHTGHLHVEGLKMSKSLKNFTTVRDLLRDGGPDVamqFRIFCLA-HKYRSNVSWSEDRMVQAEATRL--SLARFTAMSgVALARDEDGGVLDNTHW-DQPQLHLFDLLSEVRLKVREALaHDWDTPTALREVMRLVKAVDGYIGD 175
                  568*****************************973334544443.3567789999999999997777..466665554144455555556666666.67788999999999888888762579**************99999866 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.1e-08   3.5e-05     601     678 ..      27     109 ..      22     181 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 5.1e-08
    TIGR00395 601 eefWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarly..lldaaelvedadfkesev...eaakkrlerlkefa 678
                  ++ W r  v  G++ +eg k+sks  n+ t+++ +   G dva  +  +  a ++ +++ + e  +   ea++  l r+  ++
  MMETSP1174-20130828|13411_1  27 DDRWVRLWVHTGHLHVEGLKMSKSLKNFTTVRDLLRDGGPDVAMQFriFCLAHKYRSNVSWSEDRMvqaEATRLSLARFTAMS 109
                  57899999**********************************85432245577889999998875422266777777777654 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-07   7.5e-05     605     673 ..      40     107 ..      29     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.1e-07
    TIGR00392 605 ldekGrKMSKslgNvvdpekvikkyGaDv...lRlyvassdpaedlkfseeilkevaekllkilnntlrFll 673
                  l  +G KMSKsl+N +   ++++  G Dv   +R + + +++ +++  se+ + +++     ++ +++rF +
  MMETSP1174-20130828|13411_1  40 LHVEGLKMSKSLKNFTTVRDLLRDGGPDVamqFRIFCLAHKYRSNVSWSEDRMVQAEA----TRLSLARFTA 107
                  7789************************755589999999*******99999988877....5566666665 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.7e-06    0.0032     600     761 ..      41     205 ..      15     253 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.7e-06
    TIGR00396 600 vvslekmskskkngidPqeivkkyGaDalRlyilFa..sPieksleWdesgleGae..R.fldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakkeelllealkalvtvlspiaPhlaeelaeklgee 761
                  +v   kmsks kn    +++++  G+D +  + +F       ++++W+e+ +  ae  R  l r   +    l+  e    l++++ ++ + +l   + ++  kv e l ++    t++ e+m+l+ a+  +  +  +   lk+ vt ++ i+    + l+e+ +++
  MMETSP1174-20130828|13411_1  41 HVEGLKMSKSLKNFTTVRDLLRDGGPDVAMQFRIFClaHKYRSNVSWSEDRMVQAEatRlSLARFTAMSGVALARDEDGGVLDNTHWDQPQLHLFDLLSEVRLKVREALAHDWDTPTALREVMRLVKAVDGYIGDGHSGPVLKSCVTFVHEITT--IFGLSEQTNRK 205
                  55667**********************998888886114567899***99886543114158888887777666555568999************99****9********99999*********999988877766666677777776666653..34455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 954.38
//
Query:       MMETSP1174-20130828|13414_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1228.86
//
Query:       MMETSP1174-20130828|13415_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-21   73.3   0.0    2.6e-21   73.0   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-08   32.6   0.0    1.7e-08   32.0   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.049   10.0   0.0      0.075    9.4   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.9e-24   2.6e-21       1     202 [.      31     218 ..      31     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 1.9e-24
    TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeq.LRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                  +tg+ vaik ++++            Re++  ++L+hPniv+L +  + e++ lF vFey+eG       + d   p  +  ++m q+  +la  h++G  hRD+kP+n+++         kv DFG++    +++          t+++ +  Y aPe  LR  +  +  D +a G i+ e  t ++   G s a+ +yk  
  MMETSP1174-20130828|13415_1  31 QTGEIVAIKKMKKKFYSWDEC--MQLREVQSLKKLNHPNIVKLKEV-VRENDELFFVFEYMEGNLYELSKKRDRHFPESKIRNIMYQIFQGLAFMHKHGFFHRDIKPENMLIK----GDVCKVADFGLAR---ETRS-----RPPYTDYVSTRWYRAPEIlLRSTAYSSPIDQFANGCIMAELFTLRPLFPGSSEADQIYKIC 218
                  688899999999885533222..2359***************8655.666679999********99999999*************************************9995....45789*****863...3333.....446789***********7369**********************************999865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.3e-11   1.7e-08      70     141 ..      79     157 ..      50     163 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.3e-11
    TIGR03724  70 eekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkkske 141
                  +e   v+ey+eg+  + + +++++       ++++++ + ++ +Hk+g+ h D+ ++N+++k+d + + DfGL++ +++
  MMETSP1174-20130828|13415_1  79 DELFFVFEYMEGNLYELSKKRDRHfpeskirNIMYQIFQGLAFMHKHGFFHRDIKPENMLIKGDVCKVADFGLARETRS 157
                  45567888888875554444443366777889******************************************98865 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   5.5e-05     0.075     234     302 ..      83     151 ..      57     158 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 5.5e-05
    TIGR01982 234 ltlewidgipvsdleklkeaGldlkalaenlvesf..lkqvlrdgfFHaDlHpGNilvakdgkiialDfGi 302
                  ++ e+++g ++++l k + +     ++ + + ++f  l+ + ++gfFH D+ p N+l++ d    + DfG+
  MMETSP1174-20130828|13415_1  83 FVFEYMEG-NLYELSKKRDRHFPESKIRNIMYQIFqgLAFMHKHGFFHRDIKPENMLIKGDV-CKVADFGL 151
                  67788888.46677777777777788888888888333455689**************8874.55668886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1196.70
//
Query:       MMETSP1174-20130828|13416_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 1861.60
//
Query:       MMETSP1174-20130828|13424_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|13423_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1106.19
//
Query:       MMETSP1174-20130828|13425_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.97
# Mc/sec: 489.86
//
Query:       MMETSP1174-20130828|13427_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 604.10
//
Query:       MMETSP1174-20130828|13428_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1176.90
//
Query:       MMETSP1174-20130828|13429_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|13432_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-53  179.5   0.0    3.1e-53  178.7   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0   7.5e-57   3.1e-53      32     326 ..     175     478 ..     154     490 .. 0.91

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 7.5e-57
    TIGR01982  32 akllakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlv.egkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd............gkiialDfGivgrlseeerrylaeillgflerdy 326
                  ++  ++ ++  a +++ ++rl     + G  ++Kl Q ls  + llp+e++ee     d+ p+ +l+++r+v+ +elg   e lF++f  +P+A+AS+aQvh Av + +g++ avKv+  g++++ + d+   +++ +lv + +p+++      +v+e++  l  Eld+ +Ea n+ + +e f+  ++++vP v+ ++t++rvl++++ +gi+++d  ++++aG+d +a a+ + +s l+q++r+g+ H D+H+GN+lv+              ++i++lD G+  ++++e r + ae+  ++++ d 
  MMETSP1174-20130828|13432_1 175 EEENKNGNAS-ALHTRNAKRLISMARRNGGCYLKLAQHLSQLSHLLPPEYIEESITCLDDCPTSPLEDVRAVVREELGADPEDLFETFCPTPIASASLAQVHVAVEKaTGRKLAVKVQHRGLRETCRGDLDACSFAVHLVAQAFPSFE---LEWLVDEIAPHLPIELDFLQEAGNCRRAQEIFAFWPDVVVPDVFDQYTAQRVLVMSFEEGINCTDSRRIERAGIDTAAAAKLIGRSWLEQTFRHGVVHCDPHAGNVLVRPMkderggsdparrPQIVLLDHGLYKNIDDEFRLQYAEMWRSLIMADV 478
                  3333333333.3357899***********************************99999*********************66667********************865278*******************************9998877...7789********************************************************************************************************8656699**************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2240.15
//
Query:       MMETSP1174-20130828|13436_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|13435_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|13434_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1091.32
//
Query:       MMETSP1174-20130828|13437_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.64
# Mc/sec: 387.72
//
Query:       MMETSP1174-20130828|13438_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       351  (0.085568); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1237.76
//
Query:       MMETSP1174-20130828|13440_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|13444_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1174-20130828|13441_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.88    5.0  45.2       0.33    6.4   8.0    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.3    6.7   8.9       0.32    9.4   0.3    3.8  5  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  18.7     0.001       2.1     283     497 ..      19     223 ..       7     255 .. 0.50
   2 ?    6.4   8.0   0.00016      0.33     631     794 ..     252     412 ..     236     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.001
    TIGR02168 283 leelqkelqelkaeisrleqeieilkerleqlekeleelee.qleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesle 497
                  ++e++k  +e +      ++ ++  +e  +++ k+ +e+++   e++ ++ ++  +  a++++ +++++  +++++a++ +  + +  + +r ++++e  +e++ ++ e++ ++ ++++ + r+ +++ ++++ ++ l ++ +++ ++l++++ +++++q+  e +++ l+++ e++ +  e+l+ le+      ++l +  +e a+l+ +l++l 
  MMETSP1174-20130828|13441_1  19 ATEATKLAEEKS------NAAKQAVSETAANAVKQADEAKRvAAETAVATTKRVDDTSASVKNSVQDTQSAIKETAADIRR--KVVGTALERFQAAKEYETEANLKLLETSTKMIEAKESIDRAANDVARADKLLQGLLNDEKAALSSLKKISPAMAKVQSVTEAEQAFLTNAVEKRYAKAEELKGLEDT---EPRNLADIYAEAASLEVKLRLLP 223
                  222222222222......222222222222222222222220222222333333333444444444444444444444444..34444445555555555555555555555555555555555555555555555555556677788888888888888888887777777777776666666665444...44555556666666666666655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00016
    TIGR02168 631 ddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveq.leerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeie 794
                  d l +A +++k+  ++ ++ ++dG     +g+i gg + t + + + k++i+ ++   +++++ + ++ k+  el+++l++ +eel+ +r e  +    ++++   ++  +++v++ ++++++ +ek++++++++ +++++  + ae+ l+ea +  ++ ++ ++
  MMETSP1174-20130828|13441_1 252 DALSKASADQKSSLNSLTLAVTDGSA-AVKGAIKGGIKPTPQALASVKSNIASAKLSSKAAADGYGATLKQSRELDQALRSGAEELKAVRLERWDV---FAKEADLVKDTQATVKKlVSKDIKAEEKAIKSAAKKLTQARSTWDAAEKSLEEAIRAENKAQELYT 412
                  67888988889888889999999875.568999999999999999999999999999999999999999999999999999998888888777664...444444444445554441456677777777777777777777766666666666555555554443 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.67   1.4e+03      72      72 ..      40      40 ..       8      76 .. 0.56
   2 ?   -0.7   0.1      0.22   4.6e+02      36      47 ..      82      93 ..      54     136 .. 0.59
   3 ?   -1.3   0.0      0.34   7.1e+02      47      64 ..     323     342 ..     291     357 .. 0.73
   4 ?   -1.7   0.0      0.48   9.8e+02      38      57 ..     354     373 ..     346     374 .. 0.79
   5 ?    9.4   0.3   0.00016      0.32      26      63 ..     374     411 ..     373     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.67
    TIGR01410 72 n 72
                 +
  MMETSP1174-20130828|13441_1 40 T 40
                 2 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.22
    TIGR01410 36 ralrklasdvkn 47
                 +a++++a d+++
  MMETSP1174-20130828|13441_1 82 SAIKETAADIRR 93
                 333333333333 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.34
    TIGR01410  47 neldeelk..leelkeelke 64 
                  +eld++l+  +eelk ++ e
  MMETSP1174-20130828|13441_1 323 RELDQALRsgAEELKAVRLE 342
                  56777777667777766654 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.48
    TIGR01410  38 lrklasdvkneldeelklee 57 
                  ++++  +vk+ + +++k+ee
  MMETSP1174-20130828|13441_1 354 VKDTQATVKKLVSKDIKAEE 373
                  68888899999999999886 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.00016
    TIGR01410  26 kairavgklvralrklasdvkneldeelkleelkeelk 63 
                  kai++++k + ++r++++ + ++l+e++++e+  +el 
  MMETSP1174-20130828|13441_1 374 KAIKSAAKKLTQARSTWDAAEKSLEEAIRAENKAQELY 411
                  699**************************887655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       538  (0.131156); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 1179.65
//
Query:       MMETSP1174-20130828|13446_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|13445_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1071.00
//
Query:       MMETSP1174-20130828|13448_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 538.66
//
Query:       MMETSP1174-20130828|13447_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-21   73.6   0.0    5.6e-21   72.5   0.0    1.7  1  TIGR01068 thioredoxin: thioredoxin
    4.7e-14   50.4   0.0    1.2e-13   49.1   0.0    1.7  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.7e-09   34.9   0.1    2.7e-09   34.9   0.0    3.0  4  TIGR01130 ER_PDI_fam: protein disulfide isomerases
     0.0002   18.9   0.0    0.00063   17.2   0.0    1.8  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0044   14.7   0.5      0.066   11.0   0.0    3.0  3  TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
     0.0078   14.1   0.1     0.0078   14.1   0.1    2.4  3  TIGR00411 redox_disulf_1: redox-active disulfide protein 1


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   8.2e-24   5.6e-21       2      98 ..     226     322 ..     225     325 .. 0.96

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 8.2e-24
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkelie 98 
                  + ++f+++v++s  +v++D +A+WCgpCk+l P+le++     ++ +v++++ d e+e+ ++ +++++Pt+ ++   + +++ vG+ +++ l++++ 
  MMETSP1174-20130828|13447_1 226 TMNSFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMRAGGQFRVARVDADVERELVEALEVKALPTVFVVSGCQIIDSFVGVPTQEDLQQFLM 322
                  6789*****************************************************************************************9986 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.7e-16   1.2e-13       2     102 ..     226     322 ..     225     325 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.7e-16
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                  + ++f+++v+++   v+++ +a WCG Ck+l P  e++  +      +  +a+vda++e+el + ++v++ Pt+ +++  +    ++ G  ++e+l++f+ 
  MMETSP1174-20130828|13447_1 226 TMNSFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMRAGG---QFRVARVDADVERELVEALEVKALPTVFVVSGCQ-IIDSFVGVPTQEDLQQFLM 322
                  6689*********************************9887765...589************************8887666.6999***999999999975 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.9e-12   2.7e-09     326     427 ..     199     301 ..     135     324 .. 0.72
   2 !    5.9   0.0    0.0025       1.7      52     108 ..     269     325 ..     262     357 .. 0.81
   3 ?    1.2   0.0     0.068        46     272     351 ..     338     417 ..     313     421 .. 0.71
   4 ?   -5.8   2.8         6   4.1e+03     142     187 ..     695     734 ..     675     756 .. 0.32

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.9e-12
    TIGR01130 326 ldgklkpvlkSepiped.deepVkvvVgkn.fdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldat.aNdvpe.fevegFPTilfvpag 427
                  +  + ++v  S ++p   d ++V+  V  n f+++v+++   V + ++A WCG Ck+L+pi e++  +   +    +a++da  + ++ e  ev++ PT++ v +g
  MMETSP1174-20130828|13447_1 199 QRRNGEKVENSVDMPPPvDRDDVFYNVTMNsFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMRAGGQ--FRVARVDADvERELVEaLEVKALPTVFVV-SG 301
                  4444455556667766667777777666554**********************************9998887..56677777424455445********8655.34 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0025
    TIGR01130  52 pkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqs 108
                   +  +a+vDa  e+el +  +v+  Pt+ + +  + +  + G  ++e + ++l + +
  MMETSP1174-20130828|13447_1 269 GQFRVARVDADVERELVEALEVKALPTVFVVSGCQIIDSFVGVPTQEDLQQFLMRLV 325
                  56789**********************998886667888999999988888887655 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.068
    TIGR01130 272 vadeeefgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgklkpvlkSepiped.deepVkvvV 351
                  ++++ + + +l+ l  + +++  ++ ls ++++k +++  e+  e+l++ ++d+l+g+++   ++ ++p++  ++++   V
  MMETSP1174-20130828|13447_1 338 ANETGHTDVQLKALSRSLANVVGMAALSFDRKEKVETDV-EIYLEQLESQLQDYLKGDVTVDGQAAKVPHNlVQGSLSESV 417
                  444444444455555554555556666666666666653.88899************************987666666555 PP

  == domain 4    score: -5.8 bits;  conditional E-value: 6
    TIGR01130 142 elvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkk 187
                  e+ e+  ++ e+ + + +ava +    ++++ +a+++e+v  +++ 
  MMETSP1174-20130828|13447_1 695 EEEEAVAHTPESSDATEEAVAGE----EVEENDATEEEIV--DEEV 734
                  33333333222222222222221....1122222211111..1111 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.3e-07   0.00063      54      91 ..     229     266 ..     198     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.3e-07
    TIGR00385  54 lltaevlkkgklvLlnvwasWCptCraehplLkelake 91 
                   +++ v++ + +v+++++asWC++C+a  p+L+++  +
  MMETSP1174-20130828|13447_1 229 SFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMR 266
                  45667889999*********************997644 PP

>> TIGR03859  PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.75   5.1e+02      47      74 ..     261     287 ..     256     293 .. 0.67
   2 !   11.0   0.0   9.7e-05     0.066      30      77 ..     339     386 ..     330     388 .. 0.84
   3 ?   -0.9   0.0      0.49   3.3e+02      43      58 ..     566     581 ..     546     585 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.75
    TIGR03859  47 aeiiqeLeqeFpaaeeieeDVlafleea 74 
                  ++++ +   +F  ++ +++DV++ l ea
  MMETSP1174-20130828|13447_1 261 EDVVMRAGGQFR-VARVDADVERELVEA 287
                  566666677886.899999997644443 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 9.7e-05
    TIGR03859  30 nesAgailelvdGkrsvaeiiqeLeqeFpaaeeieeDVlafleearak 77 
                  ne++   ++l    rs+a+++ + +  F+ +e++e+DV+ +le+++ +
  MMETSP1174-20130828|13447_1 339 NETGHTDVQLKALSRSLANVVGMAALSFDRKEKVETDVEIYLEQLESQ 386
                  566666666666789****************************99865 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.49
    TIGR03859  43 krsvaeiiqeLeqeFp 58 
                  ++++a++++ L ++Fp
  MMETSP1174-20130828|13447_1 566 HTTLADVMALLRSQFP 581
                  6899***********8 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.1e-05    0.0078       7      78 ..     247     321 ..     241     325 .. 0.79
   2 ?   -3.3   0.1       3.1   2.2e+03      14      30 ..     541     555 ..     514     566 .. 0.64
   3 ?   -5.6   2.3         6   4.1e+03      19      34 ..     728     744 ..     710     755 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
    TIGR00411   7 tsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivingkv....efvGaPdkeeLveai 78 
                  +s  C  C + + + e+v    g +  v +++ +++++      ++a P++ +         fvG+P++e+L + +
  MMETSP1174-20130828|13447_1 247 AS-WCGPCKALNPILEDVVMRAGGQFRVARVDADVERELVEALEVKALPTVFVVSGCqiidSFVGVPTQEDLQQFL 321
                  44.5777999999*******************9999997777779*****86554431223589********9975 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.1
    TIGR00411  14 CPkakkvveevakeegd 30 
                  C +a ++v  +a+ + +
  MMETSP1174-20130828|13447_1 541 CQMAVRIV--AANGTCV 555
                  55666655..3444444 PP

  == domain 3    score: -5.6 bits;  conditional E-value: 6
    TIGR00411  19 kvv.eevakeegdkvev 34 
                  ++v eev++ee + +  
  MMETSP1174-20130828|13447_1 728 EIVdEEVEEEEQEDATE 744
                  33313455555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 1387.72
//
Query:       MMETSP1174-20130828|13452_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 895.05
//
Query:       MMETSP1174-20130828|13450_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 894.23
//
Query:       MMETSP1174-20130828|13451_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 1149.08
//
Query:       MMETSP1174-20130828|13454_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.7   0.1      0.034   12.3   0.0    1.2  1  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.2e-06     0.034      27      82 ..     121     173 ..     109     201 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.2e-06
    TIGR01617  27 eeidlkedtitreelkeilslledgidkllntrgesyraLd.tkeklkelsdkeale 82 
                  +  +   d  +++e+k+il++ +d+id l+n++ e+  +L     +l+++   e+le
  MMETSP1174-20130828|13454_1 121 TRVHHGLDD-EEQEFKKILDSQTDEIDDLFNFNEENDEELAfDASELEQI---EMLE 173
                  444444444.4568*********************999998323333333...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.55
# Mc/sec: 566.35
//
Query:       MMETSP1174-20130828|13459_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 891.93
//
Query:       MMETSP1174-20130828|13460_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-30  103.6   0.0    3.2e-30  103.3   0.0    1.0  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   7.8e-34   3.2e-30     135     318 ..      26     220 ..       9     226 .. 0.79

  Alignments for each domain:
  == domain 1    score: 103.3 bits;  conditional E-value: 7.8e-34
    TIGR01526 135 vsvsatqiRenPl.eyWkhiprevrpfFvktvailGgestGkstLvrklaeklnttsaeeyareyeeaklggde.al..kysdyakivlGqadaedaavrsadkvvfiDtDaittqvfakly.egreePllkkli.aeer..fDlvlllkpntewvdDglRsleseesRkeFqellkklLeea.....glefvvvee 318
                   ++ +t++R++     W+ +  +vr    ++v ++G+es+G stL+++la    + +++e++++y + ++     ++    s++  i+ Gqa+ ed+++++a+kv+f+DtD++t +++ + y egr +P     +  ++r  + l +l++p++++v+Dg R   see R e ++   ++Le++     g  f+vv +
  MMETSP1174-20130828|13460_1  26 ATLCGTRLRKDLTsAPWQILAPVVRANMCRRVVLVGAESSGTSTLAEALAVHYASAWVPEFGKMYWQGRQHTKAaNFgdDDSEFMTIAEGQASVEDRLAHQANKVIFCDTDVMTVTIWHRRYtEGRSCPSALDSLvGQRRhlVSLYILTTPDIPFVQDGTRE--SEELRSEMHAWFLEALEQNqqtedGCAFIVVSG 220
                  5688999999865157*************************************************77555444323311347899**********************************99956999**876655155542346779**************6..566888888888777776511111455666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 978.27
//
Query:       MMETSP1174-20130828|13462_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-45  152.6   0.1    5.7e-45  151.5   0.1    1.4  1  TIGR00484 EF-G: translation elongation factor G
    8.4e-25   84.8   1.2    1.3e-15   54.4   0.2    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.2e-12   42.1   0.3    1.3e-08   31.4   0.0    2.3  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    7.2e-10   35.6   0.0      4e-05   20.0   0.0    2.0  2  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.1   5.5e-48   5.7e-45     363     675 ..      11     348 ..       5     353 .. 0.78

  Alignments for each domain:
  == domain 1    score: 151.5 bits;  conditional E-value: 5.5e-48
    TIGR00484 363 eeieevraGdiaaliGlkdtttGdtlcdekaev.......ilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkk.ae...vegkyakqsGGr....GqyGhvv.ielePlee..gkgyefv..nei....kGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsse.lafklaaslalkeavkkakPvllePimkveve.vPeeylGdvlGdlsr.rrgliegseeresvk.vvkaevPlsemfGyatdlrsatqGraeysmeflkya 675
                  e +ee +aG  a ++Glk t tGdt++ +++ v       ++e +++p Pv  l++ P + +d +++  al+ l ++dP++ v +d+++++ i+ GmGelhl++ ++rl+ ++ +ev +G+  vayreti ++  e      ++ k  GG+    G  G +   + e +++  ++ + +   + +    +   +  + ++a+    e al++G    +P +   +t+ +      d +   a++ aa+  + +a ++ +  +lePimkvev+ + e+++G vl dls+ rr++i++  +++s +  +  e Pl+ ++Gya+++rs t+G++++sme++++a
  MMETSP1174-20130828|13462_1  11 EVVEEAQAGATAVAVGLKHTYTGDTIVGHEDLVarglgnaTMEGVHVPPPVFALSITPVEATD-DELEEALSILVRDDPSLVVGVDPDTEEPILRGMGELHLEVAIHRLQHDLGIEVATGRAHVAYRETIIQSeGEatmTSLNFDKTIGGKrlaaGLCGTLLsLDTESEDDdgSERWMMQtpEVVilpqVADELTADQLEALRDATEAALNQGQ--SFPRIGCMLTISEVMQEGPDVTTpGALRAAAAAFVAKAANQYQTSVLEPIMKVEVNlISEDHVGAVLSDLSSnRRAQIRSVSQDTSGRpRLVCEAPLVMLLGYASAVRSITKGHGSFSMEYSHHA 348
                  66899*********************998875422222227999**************87655.7799*************************************************************9664133223567899****96333366666541445555554333232221112201112233344556666666777777774..699999999999988887776541688988888889999****************846899*********75499*****9988776537999****************************9976 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.2   1.2e-18   1.3e-15     347     474 ..      13     144 ..       7     156 .. 0.86
   2 !   29.2   0.0   5.1e-11   5.2e-08     602     694 ..     250     345 ..     202     351 .. 0.81

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1.2e-18
    TIGR00490 347 vdeipagnivavvglkeavageticstdkkik......afeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgtsp 474
                  v+e  ag     vglk++ +g+ti   +  +       ++e++ h+  pv +++i   ++ d   l e l  + ++dp++ v ++ +t e ++ gmgelhle+ +++ +++ g+ev t++  v yret+  + +
  MMETSP1174-20130828|13462_1  13 VEEAQAGATAVAVGLKHTYTGDTIVGHEDLVArglgnaTMEGV-HVPPPVFALSITPVEATD-DELEEALSILVRDDPSLVVGVDPDTEEPILRGMGELHLEVAIHRLQHDLGIEVATGRAHVAYRETIIQSEG 144
                  678899*99999************9887776422212134554.99*********9998888.589**************************************************************986655 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 5.1e-11
    TIGR00490 602 vipavrkgifaallqaepvlleplqkvfin.vpqdlmgaatrei.qnrrgqilemkqegd.mvtikakvpvaemfgfagairgategralwstefa 694
                  +  a+   + +a  q +  +lep+ kv +n + +d +ga++ ++ +nrr qi  + q+      + +++p+  ++g+a a+r+ t+g+  +s+e++
  MMETSP1174-20130828|13462_1 250 LRAAAAAFVAKAANQYQTSVLEPIMKVEVNlISEDHVGAVLSDLsSNRRAQIRSVSQDTSgRPRLVCEAPLVMLLGYASAVRSITKGHGSFSMEYS 345
                  3333344455667788899**********95589********98459*****999988652567899**************************986 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2   0.00013      0.14     261     388 ..      13     138 ..       7     155 .. 0.74
   2 !   31.4   0.0   1.3e-11   1.3e-08     389     468 ..     266     347 ..     255     353 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00013
    TIGR01394 261 ideaeaGdivavaGledieigetiadaeeaea.......lpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkei 388
                  ++ea+aG   + +Gl+++  g+ti+ +e   a       ++ ++v +P          +P+        t  ++++ L+  ++ + +l v    ++++    G GeLhl + i  ++ + G e++ ++ +v ++e+
  MMETSP1174-20130828|13462_1  13 VEEAQAGATAVAVGLKHTYTGDTIVGHEDLVArglgnatMEGVHVPPPVFA----LSITPVEA------TDDELEEALSILVRDDPSLVVGVDPDTEEPILRGMGELHLEVAIHRLQHDlGIEVATGRAHVAYRET 138
                  789999999999999999999999988865441211111333444444433....33456555......4556777888888888888888888889999****************9877***********99984 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 1.3e-11
    TIGR01394 389 dgkklePieeltid.vpeefvgavieklg.krkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdey 468
                  + + lePi ++ ++ + e++vgav+  l+ +r++++ ++++++sGr rl  + P   l+G+ +++ + t+G+g  +  ++++
  MMETSP1174-20130828|13462_1 266 QTSVLEPIMKVEVNlISEDHVGAVLSDLSsNRRAQIRSVSQDTSGRPRLVCEAPLVMLLGYASAVRSITKGHGSFSMEYSHH 347
                  55679********95699*******999637******************************************999888876 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.2e-06    0.0033     265     379 ..      28     145 ..       9     156 .. 0.73
   2 !   20.0   0.0   3.9e-08     4e-05     392     473 ..     263     345 ..     249     353 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.2e-06
    TIGR01393 265 kdvkvGdtitsvkkpa.....kealpGfkkvkpvvfaglyPidsedyeelrdaleklklndaslty..ekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvyk..vklkdge 379
                  k++  Gdti  +++ +     + +++G +   pv   ++ P++++d +el +al  l  +d sl+   ++++ + +  G     +G lhlev  +rl+ +  +++ +   +v y+  +++ +ge
  MMETSP1174-20130828|13462_1  28 KHTYTGDTIVGHEDLVarglgNATMEGVHVPPPVFALSITPVEATD-DELEEALSILVRDDPSLVVgvDPDTEEPILRG-----MGELHLEVAIHRLQHDLGIEVATGRAHVAYRetIIQSEGE 145
                  45667888877666551111145567776555555559****9988.89**************9862256677776666.....69****************************8334555555 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 3.9e-08
    TIGR01393 392 eekieeveePyvkati.ivpeeylgaile.lcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyeli 473
                  ++  ++v eP++k+++ +++e+++ga+l+ l  ++r+++++++  ++ r  lv e Pl  ++l +   ++si+kG++s+  e  
  MMETSP1174-20130828|13462_1 263 NQYQTSVLEPIMKVEVnLISEDHVGAVLSdLSSNRRAQIRSVSQDTSGRPRLVCEAPLV-MLLGYASAVRSITKGHGSFSMEYS 345
                  4667899******998678999*****96378899999*****9999***********7.6789*************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1018.61
//
Query:       MMETSP1174-20130828|13458_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-80  267.5   4.6    9.2e-80  266.5   2.4    1.6  2  TIGR02037 degP_htrA_DO: peptidase Do
    3.1e-59  198.7   4.3    4.4e-59  198.2   3.0    1.2  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
      0.006   13.4   1.0      0.012   12.4   0.0    1.9  3  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.13   1.8e+02       4      24 ..     108     128 ..     105     139 .. 0.76
   2 !  266.5   2.4   6.7e-83   9.2e-80      57     317 ..     138     417 ..     120     423 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.13
    TIGR02037   4 adlvekvapavVnisteeevk 24 
                   +l e+++pavV i+t  e +
  MMETSP1174-20130828|13458_1 108 IRLFESATPAVVYINTFIEKR 128
                  578899********9865554 PP

  == domain 2    score: 266.5 bits;  conditional E-value: 6.7e-83
    TIGR02037  57 kveslGSGviisadgyvlTNnHvvdgakeikvkls....dgrefkaklvgkDektDiAvlkieak......kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrs..glnkedyeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvkiqevtkdlakslglekakGalvaevlkgspAekaGlk...........aGDvilkvngkkiksaadlreaigtlkpgkkvklkilRk 317
                  + ++ GSG++ +++gyv+TN Hv+ + ++ +v+++    d+++++a+l g D+ +DiAvlki +       + +  vk+g s  l+vG+ +lAiGnPfgl++t t+G++S+lgr+  + + + +++ IQtDaaiNpGNSGGpL++ +G+++G+NtaI+s+sG svGigFAiP+++ k vv+++++ gkv r+ +Gv+    ++  a++lg+e  +G+lv +v +gspA+ aG++            GDvil++++k+i++ +dl + + t++pg ++++k+lR 
  MMETSP1174-20130828|13458_1 138 TPQGTGSGFLWDNSGYVVTNFHVIRNSESAQVTVTdsngDQSTYNATLRGFDADKDIAVLKITNIsataksTPFVPVKIGTSTGLKVGQSALAIGNPFGLDHTLTVGVISGLGREvrSPSGRPITNVIQTDAAINPGNSGGPLLDSSGRLVGMNTAIFSPSGASVGIGFAIPVDTLKVVVDSIIRLGKVVRPAIGVSYL--ESAQARALGIE--RGVLVLDVPPGSPAAVAGIRgtsrstrgfldLGDVILAIDDKPINDERDLFKVLETYTPGVAIRVKVLRT 417
                  56899***********************999999834445789******************9864323323456679*************************************953333444*************************************************************************975..57779999996..9*****************974444433333369***********************************97 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   3.0   3.2e-62   4.4e-59      51     336 ..     111     417 ..      73     424 .. 0.84

  Alignments for each domain:
  == domain 1    score: 198.2 bits;  conditional E-value: 3.2e-62
    TIGR02038  51 vrraaPavv..nvynrslsenslnklsi.qglGsGvimskeGyiltnkhvikkad..qivvalqdGr..vfeaelvGsdsltdlavlkie.....adnlptiPlna..drkpkvGdvvlaiGnPynlGqtitqGiisatGrnglssvGr..qnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvirGylGvdgedinslsaqllgledlrgivvtevdPngPaaragll...........vrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrk 336
                     a+Pavv  n +  + ++ s+n l+  qg GsG + +++Gy++tn hvi++++  q+ v+  +G   +++a+l G+d   d+avlki      a++ p +P+    ++  kvG   laiGnP+ l  t+t G+is  Gr+  s++Gr   n +qtdaain GnsGG l++s+G lvG+nt+ f  ++   + Gi+faiP++  + +++ +ir G+v+r ++Gv+   ++s +a+ lg+e  rg++v++v P +Paa ag++             dvil +d+k+++  ++l + +   +Pg  + v vlr+
  MMETSP1174-20130828|13458_1 111 FESATPAVVyiNTFIEKRDSLSMNVLETpQGTGSGFLWDNSGYVVTNFHVIRNSEsaQVTVTDSNGDqsTYNATLRGFDADKDIAVLKITnisatAKSTPFVPVKIgtSTGLKVGQSALAIGNPFGLDHTLTVGVISGLGREVRSPSGRpiTNVIQTDAAINPGNSGGPLLDSSGRLVGMNTAIFSPSG--ASVGIGFAIPVDTLKVVVDSIIRLGKVVRPAIGVSY--LESAQARALGIE--RGVLVLDVPPGSPAAVAGIRgtsrstrgfldLGDVILAIDDKPINDERDLFKVLETYTPGVAIRVKVLRT 417
                  45799***93344666777778998876599********************9987225666666665226789***************8533322445788998861145569***********************************9667*********************************8876..678*******************************98..99999***9998..7***************99863322222222247***********************************97 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.54   7.4e+02     359     380 ..     273     295 ..     265     308 .. 0.74
   2 !   12.4   0.0   8.8e-06     0.012     127     177 ..     373     424 ..     359     427 .. 0.88
   3 ?   -4.1   0.0      0.93   1.3e+03     294     312 ..     475     493 ..     469     497 .. 0.50

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.54
    TIGR02860 359 qGmsGsPiiq.ngkviGavtHvf 380
                   G sG P++   g+++G  t +f
  MMETSP1174-20130828|13458_1 273 PGNSGGPLLDsSGRLVGMNTAIF 295
                  58899999963589999999888 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 8.8e-06
    TIGR02860 127 eeagiqvGDlilkvngekikeeedvaklineag.geklkltikRkkkkiekk 177
                  +++ +++GD+il++++++i++e+d+ k+++    g ++++++ R    i kk
  MMETSP1174-20130828|13458_1 373 TRGFLDLGDVILAIDDKPINDERDLFKVLETYTpGVAIRVKVLRTVVSIAKK 424
                  567799************************99999********998887765 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 0.93
    TIGR02860 294 kplpvalkeevkeGPAkil 312
                  k++++ +k  +ke PA + 
  MMETSP1174-20130828|13458_1 475 KQFEIEVKLTLKEKPASMT 493
                  4444455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 1204.70
//
Query:       MMETSP1174-20130828|13464_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1278.04
//
Query:       MMETSP1174-20130828|13466_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|13467_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 863.28
//
Query:       MMETSP1174-20130828|13468_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 669.72
//
Query:       MMETSP1174-20130828|13469_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1332.26
//
Query:       MMETSP1174-20130828|13471_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|13473_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 332.10
//
Query:       MMETSP1174-20130828|13472_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1638.60
//
Query:       MMETSP1174-20130828|13477_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 303.88
//
Query:       MMETSP1174-20130828|13474_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-22   75.6   0.2    5.6e-22   75.1   0.1    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    8.8e-19   65.2   0.1    2.4e-17   60.4   0.0    2.0  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    9.5e-17   58.3   0.4      9e-16   55.1   0.3    2.0  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    2.3e-16   57.4   0.0    7.7e-14   49.1   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.3e-12   45.1   0.2    2.2e-09   34.4   0.3    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    3.3e-10   37.4   0.0      6e-10   36.6   0.0    1.3  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
      9e-08   28.7   0.1    1.3e-07   28.1   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
    3.1e-06   23.5   0.1    5.9e-06   22.6   0.0    1.5  2  TIGR00631 uvrb: excinuclease ABC subunit B
    2.8e-05   21.1   0.0     0.0055   13.6   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00025   16.5   0.0       0.03    9.7   0.0    2.1  2  TIGR01054 rgy: reverse gyrase
      0.008   12.3   6.9     0.0015   14.7   1.1    2.1  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
  ------ inclusion threshold ------
      0.057    9.8   0.0        0.1    8.9   0.0    1.4  1  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.1   1.6e-24   5.6e-22       8     353 ..     153     489 ..     149     496 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 1.6e-24
    TIGR04121   8 aargwepr.afQkevleaaeegesglliapTGaGKTlavflpsliela...akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeek.eekaklvkakekkalevesllpeeeeklPwaGhlglkaleevlee.ikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepski 353
                  +++g++ + + Q +++  + eg++ +    TG+GKT a  lp++ ++a   ++ ++ ++ ++l ++P + La++++  l +  ++   +++v++  G ++   ++   ++  diL+ Tp  +  l   ++    + d+r vv+DE  e+l     + +e  L+ +     + +++  sAT       +++ ++  +   + + v a   ++++  + + ++   +P +  + +++le+v++     ++ t+vFt t+  a+    +L +  +   l  ++ Hg l+++qR+   a++k+gk++++v+T     G+D ++vd v+q   p++    + R+GR++ + ++   i
  MMETSP1174-20130828|13474_1 153 SKKGFTHFtDIQSQAFLPVFEGRDVIARSRTGTGKTIAFGLPIVEAIAasgRELDRGRAPRLLVMAPTRELARQVAAELGTLGRA--YRFSVAVFHGGAPYGPQEGSLRNGIDILVATPGRI--LDHLNRGGLKLDDVRHVVLDEADEMLDMGFSKDIEEVLSFVDM--DAAQTLLFSATTPSWI--QRISAQYMTdPLRLDAVGA---NEQRTATTVAHKAMLVPDNDEVRMSLLEDVITVeAGVESKTIVFTQTKREAD----ELSSGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRAGKKGVSI 489
                  5677776526899999999*************************9999665555555999****************999988776..567788889***********************986..44555566679***************************99986..56788999**976543..3333333331134455555...455555556666999**************99851556789*******99996....56666666677789**************************************************************99765554444 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.024       8.1      10      48 ..     156     194 ..     152     200 .. 0.93
   2 !   60.4   0.0   7.1e-20   2.4e-17     189     331 ..     350     495 ..     255     506 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.024
    TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvP 48 
                  G+ +F   q +    v +grdv+a   tG Gk + + +P
  MMETSP1174-20130828|13474_1 156 GFTHFTDIQSQAFLPVFEGRDVIARSRTGTGKTIAFGLP 194
                  8999*******************************9998 PP

  == domain 2    score: 60.4 bits;  conditional E-value: 7.1e-20
    TIGR01389 189 aaefvssfdRenlafsvvkkenkkkqll.eylkkere..ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillysea 331
                  a+e+ +++     a+ v  + + +  ll + ++ e +  +  i++++++++ +el +    + ++a+  h+ ls+k+R+ ++ +F   + kv+vat     Gid s+v  v+ + +P+n +sy   aGR GR G+k  +i+ly+++
  MMETSP1174-20130828|13474_1 350 ANEQRTATTVAHKAMLVPDNDEVRMSLLeDVITVEAGveSKTIVFTQTKREADELSSGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRAGKKGVSIVLYTQR 495
                  455555555544444454444444444414555555443678*****************************************************************************************************986 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.3   2.6e-18     9e-16      19     382 ..     142     491 ..     129     496 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 2.6e-18
    TIGR03817  19 awvepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.......pratalylaPtkalaadqlravkelee.rdvraatydGdtpaeere.wirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGv.fGshvalvlrrlrrlcaryGaePvfllasatsad.paaaasrliGleveavtedgsPrgar.tvvlwePallelegengapvrrsasaeaadlladlvaegvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrrele.ralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                  + v+p  va l+++G ++    q +a     +G++v+    t +Gk++a+ lP+++a+a++       +  + l +aPt+ la+   + + +l +   + +a++ G +p   +e  +r+  +++++ P      il + +r    l ++r+vv+de+ +   + f  ++ +vl  +     +  a  ++ l sat+ +  +  +++ +  +   ++  g+ + ++ t v ++  l+  +     +vr s   +   + a +   + +t++f +++r+a+ ++  ++ r+ +         a    G l++++r++  +++k+G+++ ++at+    G+dis +d vv +  P    s+  +aGr+Gr+g++ + +++
  MMETSP1174-20130828|13474_1 142 SQVHPRTVADLSKKGFTHFTDIQSQAFLPVFEGRDVIARSRTGTGKTIAFGLPIVEAIAASgreldrgRAPRLLVMAPTRELARQVAAELGTLGRaYRFSVAVFHGGAPYGPQEgSLRNGIDILVATPG----RILDHLNRGGLKLDDVRHVVLDEADEMLDMgFSKDIEEVLSFVD----MDAA-QTL-LFSATTPSwIQRISAQYMTDPL-RLDAVGANEQRTaTTVAHKAMLVPDN----DEVRMSLLEDVITVEAGV---ESKTIVFTQTKREADELSSGSAFRVLS---------AGVLHGDLSQKQRDVTlAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRAGKKGVSIVL 491
                  5689999****************************************************9987777655668899**********9*******88578999*******998766267888899999997....578888899999************99876547778888876544....4333.344.5556655514444455555554.44444444444403444444444433....459999998776665554...679***********9998877766655.........45567999999999873689**************************************************9887654 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0025      0.86       8      48 ..     156     196 ..     152     201 .. 0.92
   2 !   49.1   0.0   2.2e-16   7.7e-14     223     345 ..     386     507 ..     363     582 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0025
    TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                  g+ +f   q ++   v+egrd++    tG Gk + + lp v
  MMETSP1174-20130828|13474_1 156 GFTHFTDIQSQAFLPVFEGRDVIARSRTGTGKTIAFGLPIV 196
                  7889********************************99976 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 2.2e-16
    TIGR00614 223 efkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllvee 345
                    + k+ i++ +++++++++++    + l+a+  h +l++++r+    +f   + +v+vat     Gi+ ++v  v+  s+p++ +sY   +GR GR g k  ++++y++     ++rl  e+
  MMETSP1174-20130828|13474_1 386 GVESKT-IVFTQTKREADELSSGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRAGKKGVSIVLYTQRQRRGVSRLEHEI 507
                  456677.******************************************************9999********************************************98877777666555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0005      0.17     266     324 ..     184     251 ..     180     297 .. 0.70
   2 !   34.4   0.3   6.4e-12   2.2e-09     476     575 ..     406     504 ..     374     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0005
    TIGR00643 266 GsGKTvVavlallavies.Gy........qvalmaPTeiLAeQhyeklrelleplgievalLtgslkk 324
                  G+GKT+   l ++++i++ G         + ++maPT  LA+Q + +l  l + + ++va+  g    
  MMETSP1174-20130828|13474_1 184 GTGKTIAFGLPIVEAIAAsGReldrgrapRLLVMAPTRELARQVAAELGTLGRAYRFSVAVFHGGAPY 251
                  889999888888888764233222222335689***************************99987644 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 6.4e-12
    TIGR00643 476 lkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseeakkRLr 575
                    +af  l+ ++lhg l++++++  l++F++++ ++LvaT v   G+d+ n+ v+v         s  H   GR gR  kk++ + ++++ ++++ +RL+
  MMETSP1174-20130828|13474_1 406 SGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHR-AGRTGRAGKKGVSIVLYTQRQRRGVSRLE 504
                  3567889999*************************************************99********8.5****************999999999997 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.8e-12     6e-10     128     334 ..     289     494 ..     267     511 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.8e-12
    TIGR01587 128 liiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielv.eenealdlke..ekrfenqrisliekdkleeisslerl.lealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapi..dsLiQRlGRlaRygrkirenrevyvlte 334
                  +++DE++ + +   ++ ++ +l  +    ++ ll sAt p  +++   ++  +     a+  +e  +     ++ +l+ +++++ +s le++   ++  e+k +++  t ++A el++     +      +lH+  ++k r       l+++k+ +  v+vaT v+  ++Dis vdv++    p   ds + R+GR  R g+k      +   t+
  MMETSP1174-20130828|13474_1 289 VVLDEADEMLDMGFSKdIEEVLSFVDMDAAQTLLFSATTPSWIQRISAQYMTDpLRLDAVGANEqrTATTVAHKAMLVPDNDEVRMSLLEDViTVEAGVESKTIVFTQTKREADELSSGSAFRVL--SAGVLHGDLSQKQRDVT----LAQFKSGKFKVLVATDVAARGIDISnVDVVVQTSMPQnsDSYVHRAGRTGRAGKKGV---SIVLYTQ 494
                  89****98888777777********999999*********888887666554413333433333334455678999999*************44466677788888899999***9986653333..478*******9999765....******999***************86899998888853378**********888755...5555444 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.9e-10   1.3e-07     686     769 ..     414     496 ..     411     513 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.9e-10
    TIGR00580 686 riaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLr.GRvGRskkkayayllvpsqk 769
                  + ++ Hg +++++ + ++ +F++++f+vLv+T +   Gidi+n+  ++     +   ++ y  r GR GR  kk+ + +l+++++
  MMETSP1174-20130828|13474_1 414 SAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQN--SDSYVHRaGRTGRAGKKGVSIVLYTQRQ 496
                  6789****************************************97776665555..55555444***********999998875 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.3   4.5e+02      55      74 ..     211     231 ..     177     234 .. 0.54
   2 !   22.6   0.0   1.7e-08   5.9e-06     431     552 ..     375     494 ..     355     577 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.3
    TIGR00631  55 kPt.lvlahnktLaaqLyeel 74 
                   P  lv+a+ + La q+++el
  MMETSP1174-20130828|13474_1 211 APRlLVMAPTRELARQVAAEL 231
                  243278899999999999887 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.7e-08
    TIGR00631 431 dlleeirer.vaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnve.G.kvilyad 552
                   lle++ ++ +  + +++v t tk+ a++l++  + + + +  lh ++   +r   + +++ g+f vlv  ++   G+D+ +v +v      +  + +++ s +   Gr  r  + G +++ly++
  MMETSP1174-20130828|13474_1 375 SLLEDVITVeAGVESKTIVFTQTKREADELSSGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVV-----QTSMPQNSDSYVHRAGRTGRAGKkGvSIVLYTQ 494
                  4566655540556899********************************************************************996.....567788888888888888886431413345544 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0     0.006         2      30      76 ..     180     233 ..     161     238 .. 0.77
   2 !   13.6   0.0   1.6e-05    0.0055     324     387 ..     423     484 ..     413     501 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.006
    TIGR04095  30 kmatGtGktlt.aLalvskl......aekikslvvvvvvPykhLveqWakeaek 76 
                  +  tGtGkt+   L +v+++       ++ +   ++v++P ++L++q a+e+ +
  MMETSP1174-20130828|13474_1 180 RSRTGTGKTIAfGLPIVEAIaasgreLDRGRAPRLLVMAPTRELARQVAAELGT 233
                  456******9745777777765565566677778*************9999765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.6e-05
    TIGR04095 324 skeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspGk 387
                  s+++R+  l qf+sg++++lva      G+D+ ++   +  +  +n   ++ R GR  R   Gk
  MMETSP1174-20130828|13474_1 423 SQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRA--GK 484
                  6799*********************************999999*************9875..44 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   8.7e-05      0.03     104     230 ..     183     317 ..     162     392 .. 0.77
   2 !    4.8   0.0    0.0025      0.86     137     187 ..     395     446 ..     387     458 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.7e-05
    TIGR01054 104 tGvGkt.tfglvmslflakkgk........rvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknlek..lk.ykFdlvfvDDvDalLka..sknvdrilkllGFde 230
                  tG Gkt +fgl +   +a+ g+        r +++ Pt+ L++qva+ l +l +       v ++h+  ++  ++ +     +++ dil++t   +  +l++  lk  + + v++D+ D +L    sk+++++l ++  d 
  MMETSP1174-20130828|13474_1 183 TGTGKTiAFGLPIVEAIAASGReldrgrapRLLVMAPTRELARQVAAELGTLGRAYR--FSVAVFHGGAPYGPQEGS----LRNGIDILVATPGRILDHLNRggLKlDDVRHVVLDEADEMLDMgfSKDIEEVLSFVDMDA 317
                  7777773477665555555432222232338899*******************9665..556789**9999887655....3569*******98766666652244458899*********986448*******9987765 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0025
    TIGR01054 137 kqvaeklsslaekeglnir.vvayhsklstkekkevkeriengdfdilitts 187
                  +q+ +  ++l++ + + +   +++h+ ls+k++  +  ++++g f++l++t 
  MMETSP1174-20130828|13474_1 395 TQTKREADELSSGSAFRVLsAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATD 446
                  566666666666555555447899**************************96 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.42   1.4e+02      19      66 ..     176     231 ..     172     237 .. 0.70
   2 !   14.7   1.1   4.4e-06    0.0015     243     323 ..     417     499 ..     389     516 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.42
    TIGR01970  19 qvvLeappGaGkstalPLalLdapwligr........kiilLePrrlaaravaerl 66 
                  +v+ ++ +G Gk+ a+ L +++a    gr        +++++ P r  ar+va+ l
  MMETSP1174-20130828|13474_1 176 DVIARSRTGTGKTIAFGLPIVEAIAASGReldrgrapRLLVMAPTRELARQVAAEL 231
                  57888899999999999999887644443222223335788888888888888766 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.4e-06
    TIGR01970 243 PLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglar.varfdpksGlt.rLetkrisqasadqraGra 323
                   L+G+l+ +++d +++   +G+ kv +at++a   + i  v vv+ +++ + + ++  ++G t r  +k +s    +qr+ r 
  MMETSP1174-20130828|13474_1 417 VLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQnSDSYVHRAGRTgRAGKKGVSIVLYTQRQRRG 499
                  59*******************************************99885515689888887657788888888888887663 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0003       0.1     301     339 ..     424     462 ..     394     507 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0003
    TIGR00595 301 kkalealleqfaagkidiliGtqmiaKGldfpkvtlvgv 339
                  +k+ + +l+qf++gk ++l+ t + a+G+d  +v +v+ 
  MMETSP1174-20130828|13474_1 424 QKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQ 462
                  4456889***************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.89
# Mc/sec: 1072.23
//
Query:       MMETSP1174-20130828|13482_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 807.65
//
Query:       MMETSP1174-20130828|13480_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   16.9   0.5    0.00081   16.9   0.4    5.8  6  TIGR03804 para_beta_helix: parallel beta-helix repeat
  ------ inclusion threshold ------
      0.017   12.8   0.1      0.017   12.8   0.1    9.0 11  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.4    0.0032       6.5      12      42 ..     227     256 ..     220     258 .. 0.88
   2 !    4.3   0.3    0.0035       7.2      14      34 ..     307     328 ..     302     338 .. 0.84
   3 ?   -1.8   0.0      0.27   5.6e+02      20      33 ..     341     354 ..     329     362 .. 0.68
   4 ?    0.8   0.0     0.043        87      20      29 ..     405     414 ..     402     421 .. 0.76
   5 !   16.9   0.4     4e-07   0.00081      12      43 ..     424     455 ..     408     456 .. 0.76
   6 ?    1.0   0.1     0.037        76      32      41 ..     475     484 ..     466     487 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0032
    TIGR03804  12 lenNtasnNsyGIyLydSsnNtlsnNtasnN 42 
                    n+ta  N++G   y+   + ++++++sn+
  MMETSP1174-20130828|13480_1 227 FINCTAILNGGGLMAYYG-STQIRDCNFSNS 256
                  679**************9.56********98 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0035
    TIGR03804  14 nNtasnNsy.GIyLydSsnNtl 34 
                   + a+ N++ G y+y+S n tl
  MMETSP1174-20130828|13480_1 307 ECEANKNGGgGAYIYYSPNATL 328
                  6889*************66555 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.27
    TIGR03804  20 NsyGIyLydSsnNt 33 
                  N++G+++  S +N 
  MMETSP1174-20130828|13480_1 341 NGGGFHIILSHYNL 354
                  55677777776653 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.043
    TIGR03804  20 NsyGIyLydS 29 
                  N++GI L+dS
  MMETSP1174-20130828|13480_1 405 NGGGIALSDS 414
                  6778888888 PP

  == domain 5    score: 16.9 bits;  conditional E-value: 4e-07
    TIGR03804  12 lenNtasnNsyGIyLydSsnNtlsnNtasnNg 43 
                   e+N a + ++GIyL+d sn t++ +++  N+
  MMETSP1174-20130828|13480_1 424 FESNSADEAGGGIYLTDDSNATVRHCNFDTNT 455
                  46788888889*****************9997 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.037
    TIGR03804  32 NtlsnNtasn 41 
                  + l+nN+as+
  MMETSP1174-20130828|13480_1 475 CGLRNNSASS 484
                  5578888887 PP

>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.38   7.7e+02      15      21 ..     209     215 ..     207     223 .. 0.71
   2 ?    0.5   0.4      0.07   1.4e+02       5      18 ..     225     238 ..     221     241 .. 0.87
   3 ?    2.9   0.6     0.011        24       5      19 ..     251     265 ..     250     266 .. 0.86
   4 ?   -1.5   0.1       0.3   6.1e+02      11      21 ..     283     293 ..     276     294 .. 0.70
   5 ?   -2.3   0.2      0.51     1e+03      12      18 ..     310     316 ..     303     318 .. 0.65
   6 ?    1.1   0.2     0.042        87       5      19 ..     331     345 ..     330     346 .. 0.85
   7 ?   -2.4   0.0      0.55   1.1e+03      14      24 ..     366     376 ..     363     377 .. 0.76
   8 ?   -1.7   0.6      0.34     7e+02      14      20 ..     404     410 ..     399     411 .. 0.84
   9 ?   12.8   0.1   8.4e-06     0.017       5      22 ..     422     439 ..     419     443 .. 0.85
  10 ?    3.6   0.3     0.007        14       6      18 ..     450     462 ..     448     464 .. 0.89
  11 ?    4.0   1.1    0.0053        11       9      19 ..     479     488 ..     476     489 .] 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.38
    TIGR01376  15 sGGAIya 21 
                  sGG Iya
  MMETSP1174-20130828|13480_1 209 SGGCIYA 215
                  7888887 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.07
    TIGR01376   5 ilFsnNsakgsGGA 18 
                  ++F+n +a  +GG+
  MMETSP1174-20130828|13480_1 225 VSFINCTAILNGGG 238
                  899999*******8 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.011
    TIGR01376   5 ilFsnNsakgsGGAI 19 
                   +Fsn  a++ GG+ 
  MMETSP1174-20130828|13480_1 251 CNFSNSVAGNDGGGV 265
                  57********99986 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.3
    TIGR01376  11 sakgsGGAIya 21 
                  + ++sGG++  
  MMETSP1174-20130828|13480_1 283 YGENSGGGLRV 293
                  56789999875 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 0.51
    TIGR01376  12 akgsGGA 18 
                  a ++GG+
  MMETSP1174-20130828|13480_1 310 ANKNGGG 316
                  5565654 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.042
    TIGR01376   5 ilFsnNsakgsGGAI 19 
                  ++F++ s+ ++GG+ 
  MMETSP1174-20130828|13480_1 331 VSFTSCSSQTNGGGF 345
                  899999*******85 PP

  == domain 7    score: -2.4 bits;  conditional E-value: 0.55
    TIGR01376  14 gsGGAIyatgk 24 
                  + GG+ y+ g+
  MMETSP1174-20130828|13480_1 366 EDGGGMYTPGN 376
                  589*9999876 PP

  == domain 8    score: -1.7 bits;  conditional E-value: 0.34
    TIGR01376  14 gsGGAIy 20 
                   +GG+I+
  MMETSP1174-20130828|13480_1 404 VNGGGIA 410
                  49***96 PP

  == domain 9    score: 12.8 bits;  conditional E-value: 8.4e-06
    TIGR01376   5 ilFsnNsakgsGGAIyat 22 
                    F++Nsa + GG+Iy t
  MMETSP1174-20130828|13480_1 422 CGFESNSADEAGGGIYLT 439
                  56**************66 PP

  == domain 10    score: 3.6 bits;  conditional E-value: 0.007
    TIGR01376   6 lFsnNsakgsGGA 18 
                  +F  N+a+  GGA
  MMETSP1174-20130828|13480_1 450 NFDTNTAGSEGGA 462
                  6999********9 PP

  == domain 11    score: 4.0 bits;  conditional E-value: 0.0053
    TIGR01376   9 nNsakgsGGAI 19 
                  nNsa  sGG+I
  MMETSP1174-20130828|13480_1 479 NNSAS-SGGGI 488
                  67777.99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.11s 00:00:00.45 Elapsed: 00:00:00.61
# Mc/sec: 1058.08
//
Query:       MMETSP1174-20130828|13485_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   28.2   0.0    2.7e-07   28.2   0.0    1.0  1  TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family


Domain annotation for each model (and alignments):
>> TIGR00094  tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.5e-11   2.7e-07     378     411 ..      15      48 ..       3      50 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.5e-11
    TIGR00094 378 seegssrktavvlkFyLpkgsYAtsvlrElikke 411
                  ++ ++ +  +++++F+Lp g++AtsvlrE++k+ 
  MMETSP1174-20130828|13485_1  15 KLTVQAETDQLRFRFQLPPGCFATSVLREVLKTA 48 
                  4555556678*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 248.89
//
Query:       MMETSP1174-20130828|13487_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.78
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|13489_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-39  131.1   0.0    1.9e-38  130.0   0.0    1.5  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
  ------ inclusion threshold ------
      0.035   11.7   1.1      0.049   11.2   0.1    1.8  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain
      0.046    9.3   0.0      0.055    9.0   0.0    1.2  1  TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   1.4e-41   1.9e-38       2     213 ..       6     267 .]       5     267 .] 0.77

  Alignments for each domain:
  == domain 1    score: 130.0 bits;  conditional E-value: 1.4e-41
    TIGR02390   2 kkiksikfgllsPeeirklsvve............vvtadtydedGlPiegGlmdprlGviePglrCktC.........ggkvdeCpGhfGkielarPvvhvgfakeikkllratCrkCgrillkeeeieeyleklkklkeegksla.......................ktliekivkeaakk.kkCPhCgeeqkeiklekPve..fy..eeekeg..kvkltpsevrerlekipdedlkllGinpkvarPewlvltvlpvP 213
                  ++i++++fg+ sP+ ir  sv++            v++ + y++ GlP  gG+ dpr+G ie   rCktC         g+k+++CpGhfG+i+la+Pv+h+gf ke+  +lr++C +C+r+++++++  ++++ l+  + +++ +a                       + l +  ++ea+++ + C   g++   +k +  ve  ++  ee  +g  k+ l+++   ++l+ki+d d   lG++p++arPewl++tvlpvP
  MMETSP1174-20130828|13489_1   6 RRISKVQFGVWSPDGIRSGSVTKahtegglvipegVTKWESYNSAGLPSFGGVNDPRMGTIEMKVRCKTCdgtysgsatGEKKNDCPGHFGHIDLAKPVYHIGFLKEVIFVLRSVCFHCSRLMIDKNDF-KFKRALRIRNGQTRLQAihgicrtkrqcqfatretlqsgfDALDNAENDEATEElDDCGCGGYQPRYVKKDLGVEieYHpnEEVVSGdrKQYLSAEMAHNILKKITDADSMALGFDPRYARPEWLIVTVLPVP 267
                  689*****************997444444433333455689*****************************555554444457899***************************************88775.455555555555555545577777778899999888888777888888888776256766666666666655443113311444455323668888899*********************************9 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.6e-05     0.049      14      35 ..      58      79 ..      57      81 .. 0.84
   2 ?   -3.0   0.1         1   1.4e+03       5       9 ..     121     125 ..     118     132 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.6e-05
    TIGR02098 14 VddsqlginggkVRCgkCghvw 35
                 V+d   g   +kVRC++C  ++
  MMETSP1174-20130828|13489_1 58 VNDPRMGTIEMKVRCKTCDGTY 79
                 7777888999********8765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1
    TIGR02098   5 CPnCk 9  
                  C +C+
  MMETSP1174-20130828|13489_1 121 CFHCS 125
                  66663 PP

>> TIGR02386  rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0     4e-05     0.055      84     139 ..      95     174 ..      68     267 .] 0.50

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 4e-05
    TIGR02386  84 mghielaaPvahiWylkevPsri.glllditakelekv.lyfekyvvvdegetklek......................k 139
                   ghi+la+Pv hi +lkev   + ++ +  +   ++k    f++ + + +g+t+l+                        
  MMETSP1174-20130828|13489_1  95 FGHIDLAKPVYHIGFLKEVIFVLrSVCFHCSRLMIDKNdFKFKRALRIRNGQTRLQAihgicrtkrqcqfatretlqsgF 174
                  79***************997555134455555555554244666666666666666655555555554444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.66
# Mc/sec: 533.96
//
Query:       MMETSP1174-20130828|13490_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 380.25
//
Query:       MMETSP1174-20130828|13494_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|13493_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.8    1.7  12.2         14    1.1   8.5    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   8.5    0.0035        14      49      92 ..     243     286 ..     237     288 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.0035
    TIGR01299  49 feeeeddddyyapaetysrgeaaddeeegeasseateghdeede 92 
                  +e++edd+d  + + + +r e+a +eee e + +  + +de+de
  MMETSP1174-20130828|13493_1 243 LEDDEDDEDNASSSSSATRDESAGEEEEEEEAMDVCDSKDEDDE 286
                  689999999999*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 930.36
//
Query:       MMETSP1174-20130828|13492_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1575.62
//
Query:       MMETSP1174-20130828|13496_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1174-20130828|13497_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   18.4   0.0    0.00027   18.3   0.0    1.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
     0.0024   15.2   0.0     0.0027   15.0   0.0    1.1  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-07   0.00027      18      71 ..      17      72 ..       5      81 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.3e-07
    TIGR03162 18 GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAellaeklklpie 71
                 G  D+ L++ g+ qa++l+ +l    +++d +v+Spl+R+ e+A l+ e    p++
  MMETSP1174-20130828|13497_1 17 GLYDTTLTSVGRLQASQLNLELriPPPNIDLLVCSPLKRALETASLVFEGVADPVK 72
                 77899***********99998844577899***************99888777764 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-06    0.0027      26      70 ..      22      68 ..      13      83 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.3e-06
    TIGR03848 26 eLderGreqaaala..erladlpiaaivssPlercretveaiaearg 70
                 +L++ Gr qa++l    r+   +i+ +v+sPl+r+ et++ + e  +
  MMETSP1174-20130828|13497_1 22 TLTSVGRLQASQLNleLRIPPPNIDLLVCSPLKRALETASLVFEGVA 68
                 68899*****9876115777788****************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 365.80
//
Query:       MMETSP1174-20130828|13495_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.67
# Mc/sec: 642.22
//
Query:       MMETSP1174-20130828|13499_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 183.17
//
Query:       MMETSP1174-20130828|13500_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-29  101.4   0.0    1.2e-29  101.2   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
    3.7e-19   65.7   0.4      8e-19   64.6   0.3    1.7  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    3.9e-13   47.2   0.0    5.3e-13   46.7   0.0    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.2e-11   40.6   0.0    3.2e-11   40.1   0.0    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.1e-09   35.9   0.0    2.8e-09   34.6   0.0    1.6  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.6e-09   31.0   0.0    8.3e-09   30.6   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    6.8e-09   33.5   0.0    3.8e-08   31.1   0.0    2.0  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.4e-09   32.9   0.0    1.2e-08   32.4   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.1e-08   31.9   0.0    1.7e-08   31.3   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.3e-08   32.4   0.0    2.2e-08   31.6   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.4e-08   32.2   0.0    2.1e-08   31.6   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.5e-08   31.3   0.0    2.2e-08   30.7   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.8e-08   31.0   0.0    4.2e-08   30.4   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.1e-08   30.6   0.0      6e-08   30.1   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.5e-07   29.0   0.3    2.8e-07   28.2   0.0    1.6  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.8e-07   28.0   0.0    2.5e-07   27.5   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.8e-07   27.8   0.0    4.8e-07   27.0   0.0    1.4  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.1e-07   27.5   0.0    7.1e-07   26.7   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.9e-07   27.2   0.0    7.7e-07   26.5   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.1e-07   26.8   0.0    1.2e-06   26.2   0.0    1.2  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.4e-06   25.8   0.1    2.6e-06   24.9   0.0    1.5  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-06   25.5   0.0      3e-06   24.7   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.8e-06   25.3   0.0    2.9e-06   24.6   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.1e-06   24.1   0.0    3.5e-06   23.4   0.0    1.3  1  TIGR00958 3a01208: antigen peptide transporter 2
    2.2e-06   25.1   0.0    3.2e-06   24.6   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      3e-06   23.8   0.0    5.3e-06   23.0   0.0    1.3  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.3e-06   24.1   0.0    7.6e-06   23.6   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.4e-06   23.5   0.0    1.1e-05   22.5   0.0    1.5  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    5.5e-06   23.9   0.0    8.3e-06   23.3   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      8e-06   22.4   1.3    1.2e-05   21.8   0.0    1.8  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-05   22.5   0.0    1.5e-05   21.9   0.0    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.2e-05   22.0   0.0    2.3e-05   21.1   0.0    1.4  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-05   22.3   0.0    2.8e-05   21.5   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.7e-05   22.5   0.0    2.6e-05   21.9   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.1e-05   22.1   0.0    3.3e-05   21.5   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.7e-05   20.2   0.0    5.3e-05   19.7   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      6e-05   19.5   0.0    8.3e-05   19.0   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    7.9e-05   18.8   0.0    0.00012   18.3   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    0.00013   18.5   0.0    0.00017   18.1   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    0.00015   18.9   0.0    0.00026   18.1   0.0    1.4  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    0.00021   18.3   0.0    0.00031   17.7   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    0.00026   17.5   0.0     0.0005   16.6   0.0    1.4  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    0.00032   18.1   0.0    0.00066   17.1   0.0    1.5  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    0.00048   17.6   0.0    0.00072   17.0   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    0.00055   17.5   0.0    0.00091   16.8   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0015   15.9   0.0     0.0033   14.8   0.0    1.5  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
     0.0059   14.0   0.0     0.0095   13.4   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
     0.0096   13.2   0.0      0.015   12.6   0.0    1.2  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
  ------ inclusion threshold ------
       0.02   11.8   0.0      0.027   11.4   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   1.5e-31   1.2e-29     172     261 ..       2      91 ..       1     226 [. 0.82

  Alignments for each domain:
  == domain 1    score: 101.2 bits;  conditional E-value: 1.5e-31
    TIGR00955 172 rkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffsel 261
                  +++l++a+ ll +P  Lf+DEPTsGLDs sa ++v  L+k+a+   ++++tiHQPs e++++f  ++++ +G+ +y+G+pe+a  ffs l
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQASTFFSLL 91 
                  789************************************************************************************966 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.3   9.5e-21     8e-19     907    1110 ..       2     215 ..       1     389 [. 0.78

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 9.5e-21
    TIGR00956  907 RkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensk..tli...eYFekhGaekcpeeanPAewmLevigaaagakanqDyfevwrnsseykavkeeldeleeelskkedk....kesekkkky.aasl..lkqfklvlirlfq...qyWRtpdyllskll.ltivaal 1110
                   +++l+++v L  kP   lFlDePtsGLDs +a  +v  l k+a     i+ tiHqPs+ +   F  ++++  G k +Y G   + s+   l+   +  ++h a     + nPAe +L  ++    +++     e + n +e ++  +e+  l+ ++  + ++    + +++ + +  +++  +  f +v  rlf      W   +yl +kl+ l++++ l
  MMETSP1174-20130828|13500_1    2 KRKLSVAVALLGKP-RCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSG-KLAYHGTPEQASTffSLLppaDDNDQHDALDSWLKLNPAEAILSHVSNPVRSELA---VEAYLNLEETQKAAAEIFGLTMQFRYSRSSitsiNRVDDSRPFfHKPMkwYARFATVNRRLFRctkAEWF-GGYLKAKLFeLVVLSVL 215 
                   578***********.778**************************999*****************999998876.******87666542245522234457888888889************99999987...6999999999999999988877765544330011344444433133332134555665555531113443.45666665534444444 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   6.3e-15   5.3e-13     130     210 ..       2      83 ..       1     161 [. 0.92

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 6.3e-15
    TIGR01188 130 rrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyle.eadkladrvaiidkGkiiaedtpee 210
                  +r+l++a++l+ +P+ lfLDEPt+GLD++++ ++   ++++ + ++ i++t h+   e+ ++   v ++  Gk++ ++tpe+
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSiEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  89*************************************************998644999999****************996 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   3.8e-13   3.2e-11     610     687 ..       3      83 ..       1      87 [. 0.89

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 3.8e-13
    TIGR03375 610 qavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvt.Hrts..lLelvdriivldkGrivadGpkde 687
                  + +++a all +p+ l+LDEPts lD++s  kl+++L++++++  ++++t H+ s  + ++   ++v+++G++   G+ ++
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQPSieVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  5678999***********************************9999999967765336789999***********999876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.4e-11   2.8e-09     138     218 ..       2      83 ..       1      89 [. 0.88

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3.4e-11
    TIGR03864 138 rrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl..vdeveaedrlvvlhkGkvlaqGaaae 218
                  +r++ +a all +P+ L lDe+t GLD es  +lv+e+++++ + ++ ++ + h   ++  +    +vv+ +Gk++ +G++++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIA-SGDIIIMITIHQpsIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  79*************************************999.7788899999963255557778999***********9876 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   9.9e-11   8.3e-09    1067    1145 ..       2      82 ..       1      90 [. 0.89

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 9.9e-11
    TIGR01257 1067 qrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllg..driaiisqgrlycsgtpl 1145
                   +rklsva+a++g  + + ldeptsg+d  s   +   l k  sg  iim t h    ++      + +++ g+l   gtp 
  MMETSP1174-20130828|13500_1    2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSmfRAVVVMTSGKLAYHGTPE 82  
                   79***************************************************999888662145677899***9999995 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.6e-10   3.8e-08     130     210 ..       2      83 ..       1      91 [. 0.92
   2 ?   -0.5   0.0       2.1   1.7e+02     110     133 ..     131     154 ..     115     164 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 4.6e-10
    TIGR03740 130 kqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshils.evelladhiGiiseGklkyekkidk 210
                  k++l +a+all kP+ l ldePt Gld     +l   ++ + +  i ++++ h  s ev  +   + +++ Gkl y++  ++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSiEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  889**************************99999999999*************98779******************987665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 2.1
    TIGR03740 110 kivdlentekkkakqfslGmkqrl 133
                    ++le+t+k  a+ f l m+ r 
  MMETSP1174-20130828|13500_1 131 AYLNLEETQKAAAEIFGLTMQFRY 154
                  5689****************9885 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.4e-10   1.2e-08     137     222 ..       2      87 ..       1     142 [. 0.83

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.4e-10
    TIGR02142 137 kqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222
                  k + +++ AlL +P+ L +DeP + LD+++  +++  L+++++   i ++ +     ev  +   vvv+  G+++ +g++e+  + 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQASTF 87 
                  66788999*********************************9988888888877778**********************9987654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     2e-10   1.7e-08     460     539 ..       2      83 ..       1      87 [. 0.91

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 2e-10
    TIGR01842 460 rqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps..llelvdkilvlkdGalkafGeree 539
                  + ++++a al g+P+ + LDeP + LD+e    l++ l+++    i++++  h+ps  + ++   ++v+  G+l+ +G+ e+
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSieVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  678999***********************************9999999999999873357899**************99775 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.7e-10   2.2e-08     151     233 ..       2      84 ..       1      87 [. 0.87

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.7e-10
    TIGR02315 151 qqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl.akkyadrivglkageivfdgassel 233
                  + ++++a al+ +p+ ++ DEP++ LD +s+ +++  l +i+   +i++++++Hq ++ + +    +v + +g++ ++g++++ 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASG-DIIIMITIHQPSIeVWSMFRAVVVMTSGKLAYHGTPEQA 84 
                  56789************************************975.68899****977623455567999***********9986 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.5e-10   2.1e-08     142     221 ..       4      83 ..       1      86 [. 0.87

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.5e-10
    TIGR03265 142 rvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqe..ealslaDrivvmnkgkieqvgtPee 221
                  ++++a al  +P  L+LDeP s LD+    kL +el+k+        im+t  q   e  s+   +vvm +gk+   gtPe+
  MMETSP1174-20130828|13500_1   4 KLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDI--IIMITIHQPsiEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  677899*********************************87544..4666655543499*********************97 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.6e-10   2.2e-08     600     675 ..       3      81 ..       1      86 [. 0.83

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.6e-10
    TIGR01846 600 qrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv...raadrilvlekGkivesGkh 675
                  +++++a al+++Pr l lde ts ld es   +  +l++i+ g  +i+i+    ++        ++v+  Gk++ +G+ 
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIevwSMFRAVVVMTSGKLAYHGTP 81 
                  5799*******************************************99754444411145567899999999988875 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     5e-10   4.2e-08     464     517 ..       2      56 ..       1      69 [. 0.90

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5e-10
    TIGR02857 464 rqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllva.Hrl 517
                  +++l++A all + + l lDEPt+ LD+e++ +++ +l+++a+g ++++++ H++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQP 56 
                  5789*******************************************99984655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   7.2e-10     6e-08     144     223 ..       3      83 ..       1      89 [. 0.91

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 7.2e-10
    TIGR03873 144 qrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa.svcdhvvvldgGrvvaaGppae 223
                  ++  +a al  +P+ l+ldePt  ld ++ l+l++ ++++a+  + +++++h  +  + s+   vvv+ +G+++  G+p++
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVwSMFRAVVVMTSGKLAYHGTPEQ 83 
                  56789************************************************99865378899**************987 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.3e-09   2.8e-07     147     219 ..       2      75 ..       1      76 [. 0.79

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.3e-09
    TIGR02982 147 kqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnri..ldvadrivkmedGkl 219
                  k+++++a al  +P+ ++ dePt+ ld++s+ ++v+ l+k+a      i++  h + i    +   +v m +Gkl
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGD-IIIMITIHQPSIevWSMFRAVVVMTSGKL 75 
                  678999***********************************9743.44455557776522566777888888876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     3e-09   2.5e-07     477     529 ..       2      54 ..       1      56 [. 0.95

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3e-09
    TIGR02868 477 rqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  +++l +A aLl + + l LDEPt +LD e + +l+++L++  +g  ++++t +
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIH 54 
                  6899**********************************************955 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   5.7e-09   4.8e-07     107     187 ..       3      83 ..       1      87 [. 0.88

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 5.7e-09
    TIGR01187 107 qrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepee 187
                  +++++a a+  kP+ L+lDep s LD +   ++ +el+++     i ++ +     e  +m   ++v+ +Gk+a  g+pe+
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  5788999*********************************98655555555555679**********************96 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   8.4e-09   7.1e-07     133     185 ..       2      54 ..       1      58 [. 0.88

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 8.4e-09
    TIGR01166 133 kkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  k+++++a a+  +p+ l+ldePt+gld++ a +l++ l+k+      ++i+ h
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIH 54 
                  8999************************************9876666666666 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.2e-09   7.7e-07     134     211 ..       5      82 ..       2      89 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9.2e-09
    TIGR02770 134 vmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgv.vaeladevavmekGkivergtvk 211
                  + +a+all ++  l+ DePt+ lD  ++++++ +l+++ + + + ++ i h  ++ v  +   v+vm++Gk+  +gt++
  MMETSP1174-20130828|13500_1   5 LSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITI-HQPSIeVWSMFRAVVVMTSGKLAYHGTPE 82 
                  679***********************************98766555555.55444388999**********98777765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.4e-08   1.2e-06     121     198 ..       4      83 ..       1      87 [. 0.86

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.4e-08
    TIGR03771 121 rvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdr..vvllngrvvadgapdq 198
                  ++ va al  kp+ l+ldep +Gld  s  +lv  ++++a+ +  i++t h+ +  v +  r  vv+  g++   g+p+q
  MMETSP1174-20130828|13500_1   4 KLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRavVVMTSGKLAYHGTPEQ 83 
                  56799**********************************************99888877766324556788888999988 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.1e-08   2.6e-06     141     201 ..       3      65 ..       1      70 [. 0.82

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.1e-08
    TIGR03608 141 qRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev..aekad 201
                   ++++a +ll +++ ++ DEPt+ LD+++  ++++ l+++++ + +i+i  H+p++  ++++ 
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIevWSMFR 65 
                  6789999*********************************98887777888988641155555 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.6e-08     3e-06     140     211 ..       3      76 ..       1      86 [. 0.84

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.6e-08
    TIGR03522 140 qrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilst.hi.mqevealcdrviiinkGkiv 211
                  ++  +a all +P+ l ldePt+Gld +  +++   +++ia    +i+ t h    ev ++   v+++  Gk+ 
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQpSIEVWSMFRAVVVMTSGKLA 76 
                  5678899*************************999999999988777766254245999************986 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.5e-08   2.9e-06     151     229 ..       3      83 ..       1      88 [. 0.78

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 3.5e-08
    TIGR00972 151 qrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivt.hnmq.qaarvsdktaffleGelveegeteq 229
                  ++l++a al  +P  l lDePts LD++++ k+   ++++++   i+++t h+ +     +   ++++++G+l  +g++eq
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQPSiEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  6899****************************9999999998866666661443312334456678888888888888776 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.2e-08   3.5e-06     623     699 ..       2      83 ..       1      87 [. 0.74

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.2e-08
    TIGR00958 623 kqriAiARALvrkPrvLiLDeAtSALDaeve.qllqesksaksr.tvlliahr...LstvekadkilvlkkgsvvelGthkq 699
                  k ++ +A AL+ kPr L LDe tS LD+e+  +l+ e ++ +s   +++i+ +   +++      ++v++ g++   Gt +q
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESAlKLVTELNKIASGdIIIMITIHqpsIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  78899***********************776266777666665505556665512234445678999999999999998665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.8e-08   3.2e-06     138     218 ..       3      83 ..       1      87 [. 0.89

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 3.8e-08
    TIGR03410 138 qqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                   +l++a aL+ +P++l LDePt G+      ++ + ++++a+ + + ++ + q    ++++   ++v+  G++  +g+ e+
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  689************************999999999****9987777778888888899999***********99998766 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.4e-08   5.3e-06     617     692 ..       2      81 ..       1      88 [. 0.85

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.4e-08
    TIGR01193 617 kqrlalarallsdskvlildestsnldlltekkivenllklkdktiif.v.ahr..lsvakksdkiivldeGkiieqGsh 692
                  k++l++a all + ++l lde ts ld     k+v +l k+    ii  +  h+  ++v ++   ++v+ +Gk+  +G+ 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIImItIHQpsIEVWSMFRAVVVMTSGKLAYHGTP 81 
                  889**************************************8766554142475347788999**********9988875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.1e-08   7.6e-06     144     200 ..       3      59 ..       1      74 [. 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.1e-08
    TIGR02673 144 qRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelv 200
                   + ++a a++ kP+ l  DePt  lD+e + ++++ l+++ +  + ++++ h+ ++ 
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIE 59 
                  6789*************************************99999******98874 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.3e-07   1.1e-05     145     226 ..       3      83 ..       1      89 [. 0.87

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.3e-07
    TIGR03258 145 qrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd.rdealvladkillmkeGslialGetra 226
                  +++++a al  +p+ l+ldep s ld++   ++v el+++     ++ +++  h+   e   +   + +m  G+l+ +G++++
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIAS--GDIIIMITIHQpSIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  578999********************************9976..57777776776245888899999*************987 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.9e-08   8.3e-06     148     219 ..       3      75 ..       1      77 [. 0.69

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 9.9e-08
    TIGR02211 148 qrvaiaralvnkPklvladePtgnldkktakkifelllelnkekn..tallvvthdl..elakkldrvlelkdgkl 219
                  ++ ++a al+ kP++++ dePt+ ld+++a    +l++elnk     + +++  h+   e+   +  v+ ++ gkl
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESAL---KLVTELNKIASgdIIIMITIHQPsiEVWSMFRAVVVMTSGKL 75 
                  56789*********************99885...566777765441144445556541144556666777777766 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.5e-07   1.2e-05     595     670 ..       3      83 ..       1      87 [. 0.82
   2 ?   -2.3   0.1       2.9   2.4e+02     340     400 ..     178     239 ..     129     259 .. 0.56
   3 ?   -2.6   0.1       3.5   2.9e+02     256     302 ..     263     309 ..     228     340 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.5e-07
    TIGR03797 595 QRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviA...HRLST.ir.nadrilvleeGrvveqGsyee 670
                   +l +A al  kPr l++DE TS LD ++    +  l+k++   i+i    H  S  +      ++v+  G+++ +G+ e+
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMitiHQPSIeVWsMFRAVVVMTSGKLAYHGTPEQ 83 
                  57889*************************999999*****9999884333776642331345689999999999999876 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.9
    TIGR03797 340 wakefseqrklelkaqriedlltvlna.vlpvltsavlfalaisllaaaklslgsflafnta 400
                  w  +f+  ++  ++  ++e +   l+a  +++++  vlf  ++s ++  ++ +  f+++ + 
  MMETSP1174-20130828|13500_1 178 WYARFATVNRRLFRCTKAEWFGGYLKAkLFELVVLSVLFRNVTSNTMMLSMLSCGFMGHFAF 239
                  55555555555555555555555544313455555666666666555555555555555444 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 3.5
    TIGR03797 256 allssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrk 302
                   + +  f+l n++ l++  +  a ++  ++l a   t v+   q+r+
  MMETSP1174-20130828|13500_1 263 VITTLHFSLANMGYLFTQTTLSAFLTGFVVLSAGFGTNVIPKHQIRY 309
                  34456688888888888776666666666665555666666666665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.8e-07   1.5e-05     141     219 ..       2      81 ..       1      85 [. 0.68

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.8e-07
    TIGR01288 141 krrltlaralindpqllildepttgldpharhliwerlrsllargkti.lltthlme.eaerlcdrlcvleagrkiaegrp 219
                  kr+l++a al+  p+ l ldept+gld  +   +   l   +a g  i ++t h    e   +   ++v+ +g+    g p
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNK-IASGDIIiMITIHQPSiEVWSMFRAVVVMTSGKLAYHGTP 81 
                  8**************************9876555556665.5666655055666432144445555555566655555555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.8e-07   2.3e-05     482     558 ..       2      81 ..       1      87 [. 0.83
   2 ?   -3.5   0.1       7.4   6.2e+02     262     285 ..     219     242 ..     209     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.8e-07
    TIGR02204 482 kqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlvia.hrLa.tvlkadr.ivvldkGriveqGth 558
                  k+++++a a+l + + L+Lde ts Ld+es  ++ + l+++ +g   ++i  h+ +  v +  r +vv+  G++  +Gt 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQPSiEVWSMFRaVVVMTSGKLAYHGTP 81 
                  67899**************************************99988876255431455555537899****9999985 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 7.4
    TIGR02204 262 vGardvlagklsaGeLaqfvlyav 285
                  v ++ ++   ls G +++f++y v
  MMETSP1174-20130828|13500_1 219 VTSNTMMLSMLSCGFMGHFAFYGV 242
                  456677888899999****99987 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.4e-07   2.8e-05     151     231 ..       3      83 ..       1      87 [. 0.84

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.4e-07
    TIGR01978 151 krneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvel 231
                  ++  +   +l +P+   LDe  sGlD ++   +++++nk+++ +  ++i  h+  +        v v+++G+++ +G  e 
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  555555556669**************99766666789*******9999999999999999999***********9998775 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.1e-07   2.6e-05     145     216 .]       3      75 ..       1      75 [. 0.89

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.1e-07
    TIGR00960 145 qrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenl.veskrkrvltlskGkl 216
                  +++++a a++ kP  l+ dePt+ ld+e +++++  l+++    + ++++ h+ ++ v s+ + v+++ +Gkl
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIeVWSMFRAVVVMTSGKL 75 
                  57899***********************************999999999999988756677778888888876 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.9e-07   3.3e-05     149     228 ..       2      83 ..       1      86 [. 0.83

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.9e-07
    TIGR03411 149 kqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvve.hDmef.vrelaekvtvlheGkvlaeGslde 228
                  k  L +++ l+ +p+ l+lDeP++G+ +e   k    l+++a+   ++++  h  +  v ++ + v v+++Gk+  +G+ ++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITiHQPSIeVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  78899*********************99999998888888888877776652655443778889*********999998765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.4e-07   5.3e-05     477     553 ..       3      82 ..       1      85 [. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 6.4e-07
    TIGR02203 477 qRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstie...kaDrivvlddGkiverGthe 553
                   +l++a all     L LDe ts LD+es  ++   L+++  g   ++i      ie       +vv+ +Gk+  +Gt e
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEvwsMFRAVVVMTSGKLAYHGTPE 82 
                  6799****************************************999998777777722234679************976 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.9e-07   8.3e-05     411     482 ..       4      76 ..       1      80 [. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 9.9e-07
    TIGR02633 411 kavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvai.ivvsselaevlGlsdrvlvigeGklk 482
                  k  +a  ll +pr l ldept G+d  +  ++   +n++a   + i i +     ev  +   v+v+  Gkl 
  MMETSP1174-20130828|13500_1   4 KLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIImITIHQPSIEVWSMFRAVVVMTSGKLA 76 
                  555778899*****************999999999999988766541456667789**************985 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06   0.00012     622     696 ..       3      82 ..       1      87 [. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
    TIGR03796 622 qRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciiv...aHRLst.i.RdcdeiivlerGkvverGtHe 696
                   +l +A aL  +P  L lDE ts LD+e   +++ +l +     ii+    H  s  +      ++v+  Gk+  +Gt e
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIImitIHQPSIeVwSMFRAVVVMTSGKLAYHGTPE 82 
                  6899******************************9999977665554111466553221334567888888888888766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-06   0.00017     174     260 ..       2      88 ..       1     111 [. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.1e-06
    TIGR03269 174 kqrvvlarqlakeplllladeptGtldpkta.klvhealkeavkeedislvltshwpev.iedlsdkaillekGeiveeGepeevvakf 260
                  k+++ +a  l  +p +l+ dept  ld ++a klv   l++ + + di +++t h p + +  +    +++  G++   G+pe+ ++ f
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESAlKLVT-ELNK-IASGDIIIMITIHQPSIeVWSMFRAVVVMTSGKLAYHGTPEQASTFF 88 
                  5566677788999****************9945555.5555.5677899999*****984556777778899**********9977655 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.2e-06   0.00026     152     233 ..       2      83 ..       1      88 [. 0.83

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.2e-06
    TIGR03005 152 kqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf.arefadrvlffdkGkiveeGkpde 233
                  k+++++a al  +p+ l++de+ts ld e   ++++ l ++as   + m+   h+       +   v+ +  Gk++ +G p++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMI-TIHQPSIeVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  56789999********************************9997655555.556655515677778999999*******9997 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-06   0.00031     146     224 ..       2      80 ..       1      99 [. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.7e-06
    TIGR02314 146 kqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrl..gltillithemdv.vkricdevavidkgeliekgt 224
                  k+++++a al  +p+ l+ de ts ld    +s l+l+ e+n+    ++ i++  h+  + v ++   v v+++g+l  +gt
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDS---ESALKLVTELNKIAsgDIIIMITIHQPSIeVWSMFRAVVVMTSGKLAYHGT 80 
                  78899**********************7...577777777777542146666666776655789999*********998877 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     6e-06    0.0005     167     213 ..       2      49 ..       1      56 [. 0.83
   2 ?   -3.3   0.0       6.5   5.4e+02     318     352 ..     352     386 ..     348     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6e-06
    TIGR03719 167 krrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk.Gtvva 213
                  kr+++++  ll kP  l+ldePt  ld+es   l   l++ + G +++
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIAsGDIII 49 
                  89999999***********************99999998875244433 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.5
    TIGR03719 318 lGdkvievenlskafgdklliddlsfklpkggivG 352
                  lG +vi   +l k+ g+ l+  +l  +l   +++ 
  MMETSP1174-20130828|13500_1 352 LGGVVISRAQLDKSIGSWLIDVNLMWNLMSLAVIE 386
                  9999***********99999889999988888775 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.8e-06   0.00066     136     218 ..       2      84 ..       1      88 [. 0.91

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.8e-06
    TIGR00968 136 rqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                  ++++++a al  +p+ l+ldep + ld++   +l + l k+     +  + +     e   +   +vv+  Gk+   g++e+ 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQA 84 
                  57889999*********************************988777777777788899******************999985 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.6e-06   0.00072     120     197 ..       2      79 ..       1      82 [. 0.87

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.6e-06
    TIGR01184 120 kqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                  k+++++a al  +p+ l+ldep   ld+ +  +l  +l ki+  + + ++ +     e   +   vv++t+g  a+ g
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHG 79 
                  788999************************************998877777777777888888889999999877655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-05   0.00091     133     187 ..       2      56 ..       1      63 [. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.1e-05
    TIGR01189 133 krRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                  kr+l++a  ll k +   LDEPt  lD e+  +l + l++ ++ + i++++ hq+
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQP 56 
                  899**********************************998666666666677775 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.9e-05    0.0033     158     230 ..       4      76 ..       2      97 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.9e-05
    TIGR02769 158 riniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfit.hdlrl.vqkfaqrvlvldeGqiv 230
                  ++++a al  +P+ + lde  s ld    ++++  l+k+   +G  +++it h  ++ v ++   v+v+  G++ 
  MMETSP1174-20130828|13500_1   4 KLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIA--SGDIIIMITiHQPSIeVWSMFRAVVVMTSGKLA 76 
                  5679999******************998877777777764..56555555535444327788899*******986 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00011    0.0095     135     209 ..       3      77 ..       1      80 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00011
    TIGR01277 135 qrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls.daaaiasqvvvvedGkikv 209
                  +++++a  l+ +   l+ldep s ld     ++++ ++k+a+  ++ +++  h++s ++ ++   vvv++ Gk+++
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASG-DIIIMITIHQPSiEVWSMFRAVVVMTSGKLAY 77 
                  56677888888888999**********9999999999998876.56666667888746777778888899999986 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00018     0.015     155     209 ..       2      56 ..       1      70 [. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00018
    TIGR02324 155 kqRvniaraliadrPiLLLdePtasLdaanr.kvvvelikeakargaaligifhde 209
                  k+++ +a al+ +   L LdePt+ Ld+    k v el k a  + + +i+i h+ 
  MMETSP1174-20130828|13500_1   2 KRKLSVAVALLGKPRCLFLDEPTSGLDSESAlKLVTELNKIASGDIIIMITI-HQP 56 
                  678899999999555689********98664266777655555555555554.554 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00032     0.027     136     216 ..       3      83 ..       1      96 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00032
    TIGR01186 136 qrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPde 216
                  +++ +a al  +P  l++de+ s ld     +l  el k+ +     ++ i     e   +   +v++ +G++   GtP++
  MMETSP1174-20130828|13500_1   3 RKLSVAVALLGKPRCLFLDEPTSGLDSESALKLVTELNKIASGDIIIMITIHQPSIEVWSMFRAVVVMTSGKLAYHGTPEQ 83 
                  6788999********************************9876655555555566799999999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        57  (0.0138957); expected 4.1 (0.001)
Passed Fwd filter:                        49  (0.0119454); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              49  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.75
# Mc/sec: 756.74
//
Query:       MMETSP1174-20130828|13504_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 338.43
//
Query:       MMETSP1174-20130828|13502_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 915.84
//
Query:       MMETSP1174-20130828|13505_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.3   2.2       0.03   11.5   1.6    1.2  1  TIGR03383 urate_oxi: urate oxidase


Domain annotation for each model (and alignments):
>> TIGR03383  urate_oxi: urate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   7.2e-06      0.03     104     205 ..     121     232 ..     108     237 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-06
    TIGR03383 104 weriev.dgkehehsFvregeetrtaevevkrsg.......klkvtsglkdltvlkstgseFvgFirdeyttLpetkdRilateveakWryeeeedatevd..fdaayeqvr 205
                  ++ ++  +++++++ ++ egee +  +v++k ++       +++v+ + ++ ++l  ++  F++++r e + L++++    ++++++ ++y+++e   +    f++ay+ vr
  MMETSP1174-20130828|13505_1 121 FSLMDStEEEKRSYKWTIEGEEFHGRNVTFKFKTvsrkfvvSVEVKDRASGTRILSGSDTVFTKYVRRELRNLNDDDRTRWFSTLRTLYDYNTTEGRLKFGhqFKSAYDFVR 232
                  55555535555677777777777666666543322120111344446667899********************987665566779*******55554444344999988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|13506_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 439.01
//
Query:       MMETSP1174-20130828|13509_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.60
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|13507_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.5   0.0      0.022   11.8   0.0    1.4  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-06     0.022     199     250 ..       5      56 ..       2      79 .. 0.88
   2 ?   -1.6   0.0     0.062   2.6e+02      54      78 ..      67      91 ..      60      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.3e-06
    TIGR01121 199 ilnGitrkvilklaeenglpvkeealtkeelkeadevfvssttaevtPvvei 250
                  +l G  r+ +l+++e +g+pv  ++   ee+ + +  ++sst+  + P+ e+
  MMETSP1174-20130828|13507_1   5 VLAGTVRRLLLEVCEREGVPVVLSPPKLEEAGDWEAALISSTSRLLLPIDEL 56 
                  799*****************************************99998665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.062
    TIGR01121 54 aakirldlpyskeelkellkelvek 78
                 aa++r ++  s  +l ++l++lv+ 
  MMETSP1174-20130828|13507_1 67 AADLRRSFDNSARSLARKLQDLVQG 91
                 6666667777788888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 302.97
//
Query:       MMETSP1174-20130828|13510_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 882.68
//
Query:       MMETSP1174-20130828|13511_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-05   18.4   3.8    0.00013   17.8   0.2    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.014   13.0   0.1      0.051   11.2   0.0    1.9  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   6.3e-08   0.00013     577     680 ..      48     155 ..      41     184 .. 0.77
   2 !    1.1   0.2    0.0071        15      55      88 ..     186     219 ..     178     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.3e-08
    TIGR02917 577 ylskgelkkalailee.aadlapdspellellgraql...aakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLll 680
                  + ++g+  +a ++le+ a+ + pds e++  lg a         ++ a+e+f+++++l p+sa+ ++ l +  a+ +  ++A++++ + L+l+pd++ea +  ++L +
  MMETSP1174-20130828|13511_1  48 LIQEGQYRRAAEMLEKqALPTRPDSFEAWTKLGVARRlgwGIEGVEPAIEAFESAAALRPKSAELQAYLSAELASTSRLEEARNAAFRTLALQPDHMEALVTATRLTN 155
                  667788888877776426678889999998888665411145678899999999999999999999999988899999999999999999999999999999999876 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.0071
    TIGR02917  55 daeaRflLgkiyleqGdaaaAekeLrkAlslgys 88 
                  ++ a f L k++  +G+ +aA keL+ A  l  +
  MMETSP1174-20130828|13511_1 186 EIKAHFALFKALDGLGEHSAAAKELKTANRLENE 219
                  6779999999999999999999999999888655 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05     0.051      28     120 ..      48     144 ..      43     154 .. 0.84
   2 ?   -2.4   0.0      0.38   7.8e+02      88     117 ..     189     218 ..     184     227 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
    TIGR02552  28 lyqqgkyeeAeklFqlLaa.ldpteakywlgLaaclqa...lkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  l q+g+y++A+++ +  a+   p +++ w  L++++      +  e Ai+a++ aaal++++++   +++  l    + eeA++a +++++++ +  
  MMETSP1174-20130828|13511_1  48 LIQEGQYRRAAEMLEKQALpTRPDSFEAWTKLGVARRLgwgIEGVEPAIEAFESAAALRPKSAELQAYLSAELASTSRLEEARNAAFRTLALQPDHM 144
                  56888888888888655442578899999999999986333677899**************************************999999988765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.38
    TIGR02552  88 pvyhaaecllalgekeeAlkaLklaieiae 117
                  +++++ + l  lge   A k Lk+a ++ +
  MMETSP1174-20130828|13511_1 189 AHFALFKALDGLGEHSAAAKELKTANRLEN 218
                  556666666667888888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 1432.33
//
Query:       MMETSP1174-20130828|13513_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 902.64
//
Query:       MMETSP1174-20130828|13515_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 982.59
//
Query:       MMETSP1174-20130828|13514_1  [L=831]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.0  40.0       0.39    6.1  27.7    1.3  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  27.7   9.6e-05      0.39     674     893 ..     107     332 ..      91     335 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 9.6e-05
    TIGR02169 674 keklerlrerleeL...ereleslqselrriekrldelssklsdaekkieei..ekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeiee.leeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkere 893
                  ++   ++  +l++L   ++el+++ +++r +e + ++l s++++ +k++ e+  ++e++ +++e++ lk+ l  +++  ++l e++e++++ l++ ++++++ ee  ++ +  +e+l++  +eek +    +l+ +ee++++  a+ +e+e +l + + ek+ l    ++l++e +  + e+ ++ ++ + + + +++ +e+ele+l+ + +eLe   + +k+e e
  MMETSP1174-20130828|13514_1 107 RATRTSMTLDLDSLrleKEELDKINNQKRFVEDENSNLLSEIDALKKQLAEMrgQQEASSVSDERRLLKDYLYGMRKTKQQLIEDREAHEKVLNAAKEQLNKEEEGHKHTRSTIEKLQRLHQEEKKDLQAGHLKTVEETHASHAAARKELEDALGDISKEKDRLTLMHANLEKEKQGiIAENAQDKAAMLIKFEESKKLVESELEKLRLEKEELERMAHVMKAEHE 332
                  4444556666666622234566777888888999999999999999999988224566678999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888888777776655541455666666667777778888999999999999999988877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.61
# Mc/sec: 1798.08
//
Query:       MMETSP1174-20130828|13517_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|13519_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   25.8   0.0    1.5e-06   25.5   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
    7.8e-05   19.5   0.0    9.5e-05   19.2   0.0    1.0  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   7.4e-10   1.5e-06      61     157 ..      13     109 ..       7     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 7.4e-10
    TIGR03516  61 evkyetskkGfwyaykkkdttetktpetgDlvsfeye..ikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGde 157
                  + +  t+++G +    k++++ +  p+ gD vs +y+  ++ +d d  + ++++g   +++    +i+G  +++ +m  g++  f++P+  ayG  G+ 
  MMETSP1174-20130828|13519_1  13 DDEIITTSSGLRAQVVKRSKAGGSPPKAGDKVSVDYTgwLNGFDKD--VFDKQTGAFAFTLGSGFVIKGWEEAIPFMSLGDTWRFYIPAALAYGSDGYP 109
                  566789999999999*********************9444555555..457789****************************************88864 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.6e-08   9.5e-05     124     204 ..      13      95 ..       3      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.6e-08
    TIGR00115 124 dedvdeeleklreqnatlvpverdaaekgDivtidfegkv...dGeafeggkaedfelelgsgqfipgfeeqlvGmkaGeekei 204
                  d+++ ++   lr q  +  ++  ++ ++gD v +d++g     d   f+  ++  f+++lgsg +i+g ee++  m+ G++  +
  MMETSP1174-20130828|13519_1  13 DDEIITTSSGLRAQVVKRSKAGGSPPKAGDKVSVDYTGWLngfDKDVFD-KQTGAFAFTLGSGFVIKGWEEAIPFMSLGDTWRF 95 
                  5555566666777777777666559*************88343444555.56669******************99999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 664.66
//
Query:       MMETSP1174-20130828|13520_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1174-20130828|13522_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   54.6   0.0    2.1e-15   54.4   0.0    1.0  1  TIGR02037 degP_htrA_DO: peptidase Do
    3.6e-08   30.7   0.0    3.8e-08   30.7   0.0    1.0  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0     1e-18   2.1e-15      76     186 ..       2     116 ..       1     117 [] 0.88

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1e-18
    TIGR02037  76 NnHvvdgakeikvkls.dgrefkaklvgkDektDiAvlkieak...kklpvvklgdsdklrvGdlvlAiGnPfglg.etVtaGivSAlgrsglnked.yeeFIQtDaaiNpGNSGGp 186
                  N+H v+ a+ i+v+ +   ++++a +    +  D+ vlk+e++   ++l+ +k+g   +++  + v+ +G P g +  ++t+G+vS  + ++ ++       +Q DaaiNpGNSGGp
  MMETSP1174-20130828|13522_1   2 NAHSVEYATIIQVRSRgSATKVEAVVEAYGPDCDLSVLKVEDEsfwEDLEPMKFGTLPEMQ--EEVVVLGYPIGGDsMSITSGVVSRVELQEYSQAGaSLLAVQIDAAINPGNSGGP 116
                  9*************98577899999999*************9989999*******999887..78999*****976269*******99988666555266779*************9 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.9e-11   3.8e-08      94     202 ..       2     115 ..       1     117 [] 0.80

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.9e-11
    TIGR02038  94 nkhvikkadqivvalq.dGrvfeaelvGsdsltdlavlkieadn..lptiPlnadrkpkvGdvvlaiGnPynl.GqtitqGiisatGrnglssvGr.qnflqtdaainaGnsGG 202
                  n h ++ a  i v  +    ++ea +    +  dl+vlk+e ++      P+   + p++ + v+ +G P      +it G++s +  +  s +G  +  +q daain GnsGG
  MMETSP1174-20130828|13522_1   2 NAHSVEYATIIQVRSRgSATKVEAVVEAYGPDCDLSVLKVEDESfwEDLEPMKFGTLPEMQEEVVVLGYPIGGdSMSITSGVVSRVELQEYSQAGAsLLAVQIDAAINPGNSGG 115
                  66777777666554441345677878888999**********99534678******************998641568*************98888615679************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.76
# Mc/sec: 203.19
//
Query:       MMETSP1174-20130828|13521_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-36  123.2   0.0    4.8e-14   49.8   0.0    4.0  3  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
    4.9e-20   70.2   0.0    1.4e-17   62.2   0.0    3.1  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    0.00014   19.8   0.0       0.07   11.1   0.0    3.2  3  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    0.00034   17.9   0.0    0.00069   16.9   0.0    1.5  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    0.00052   17.3   0.0     0.0016   15.7   0.0    1.8  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
  ------ inclusion threshold ------
      0.024   11.8   0.2       0.28    8.3   0.1    2.2  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family


Domain annotation for each model (and alignments):
>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.7e-12   1.1e-09       3     125 ..       8     146 ..       7     155 .. 0.75
   2 !   49.8   0.0     7e-17   4.8e-14     145     253 ..     189     313 ..     164     324 .. 0.76
   3 !   30.4   0.0   5.7e-11   3.9e-08     265     321 .]     350     410 ..     336     410 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.7e-12
    TIGR01456   3 falDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngG.glserkraeelsalL........g....v.....evsplqviqshsPfkklvnkyekrvlaaGkg..evaevaegyGfknvvsvdelasyfddidpla 125
                  +a+DiDGv+  G+   + +  al +  +       Pv ++tngG gl e++    l ++L        +    v     e+  + +i+s++P+ ++ +    ++l  G +  +v++ +  yG+kn v+v ++   ++ ++p+ 
  MMETSP1174-20130828|13521_1   8 IAFDIDGVFKAGRFFFPNSVRALSKAKQA----GCPVCFVTNGGgGLNESEYMASLKEKLrqaaaeeeDsasiVedrldEIGDDAMILSYTPMGEYEEFKTAQILLIGDPkeKVKATVAMYGWKNAVHVSDYFALHPTMNPFN 146
                  89********************9998877....79*******86257776655555555422211111011111122225677899*********98877779**99987325889999*********************996 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 7e-17
    TIGR01456 145 krveavlvlsdPvdWeadiqvisDvlrs...eglpgkelg.kPslpvyisndDLlyaaefklerlGqGafrlllesiyqk..........vtgkpLeye..slGkPskltykyaedvlkeiekrl 253
                  + ++av+v+ dP+dW   +q  +Dv+ s   + + g e   + ++ v +sn D+ ++a  + +r+GqGafrl+ e + +           + ++ L++     GkPs  t  +a+  l ei ++ 
  MMETSP1174-20130828|13521_1 189 DDFDAVVVMCDPHDWFEALQAAVDVVVSsmpNTSEGIEFDiRRRVCVHFSNPDIFWKAAHPQPRFGQGAFRLAFEALLRArlglllappaLIDQRLRDCviQWGKPSVPTLTFAQRRLAEIFQKX 313
                  4589*********************988222334444433356899*****************************99863222222222256788888755679999999999998888876644 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 5.7e-11
    TIGR01456 265 klymvGDnPksDiiGarqag...lfsilvktgvydgkd..elkefkadlvvdsveeavtkiL 321
                  + +mvGDnP+sD+  a  +g   +  +lv+tgvyd++      +++a  vvd+ve av+ iL
  MMETSP1174-20130828|13521_1 350 SFWMVGDNPASDMALAA-MGdknWSGVLVRTGVYDDSGlsSSCKCGAAAVVDDVEAAVDYIL 410
                  579**********9988.55577***********98761145567899***********997 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     2e-20   1.4e-17       1     246 []       8     380 ..       8     380 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 2e-20
    TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNns.grseedlaeklssllgvdvspeqiitshsvtkellk..................kfenervllig..egelreslenlgfknvvtvddlrkivedid......v...................................edleaekiqaavlvgepsdlsydelakaakllseg.............kvpfiaane.......eklerlgdgafrlglgsilek..........ikeksgree.ivvGKPspalykaaeellkarakrr....................................kvlmvGDnlrtDvlgAk..eaGldslLvltG 246
                  ++fDidGV   g   +p+++ al + +++g pv fvTN++ g +e+++++ l+++l   +++e   +s+s++ + l                   +f+  ++llig  ++++++++  +g kn v+v d+    + ++      +                                      + + ++a+v++ +p+d+ + ++a ++ ++s+               v + ++n         + +r+g+gafrl+++++l +          + ++ +r+  i  GKPs  ++ +a+++l +  ++                                        mvGDn+++D+  A   +  +  +Lv+tG
  MMETSP1174-20130828|13521_1   8 IAFDIDGVFKAGRFFFPNSVRALSKAKQAGCPVCFVTNGGgGLNESEYMASLKEKLRQAAAEE--EDSASIVEDRLDeigddamilsytpmgeyeEFKTAQILLIGdpKEKVKATVAMYGWKNAVHVSDYFALHPTMNpfnedaShtavacpsapylparpstgsfsaqdipdkdevrigR--APDDFDAVVVMCDPHDWFEALQAAVDVVVSSMpntsegiefdirrRVCVHFSNPdifwkaaHPQPRFGQGAFRLAFEALLRArlglllappaLIDQRLRDCvIQWGKPSVPTLTFAQRRLAEIFQKXeerakkkevdtssapppppletntgavdeakpgmssSFWMVGDNPASDMALAAmgDKNWSGVLVRTG 380
                  68************************************86268999*****999654433322..23333333333333333344444444444448889******4456899*******************9999999766651566677888888999999999*****9887665430..446799************************9999***9***99995555555656777767679**************996422222222225666777775789*************99988888788899*******************************9************999733567999999998 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0001      0.07       3      74 ..       8      70 ..       6     131 .. 0.79
   2 ?   -3.4   0.0       2.9     2e+03       7      31 ..     191     211 ..     189     218 .. 0.57
   3 !    4.9   0.0    0.0079       5.4     111     135 ..     348     371 ..     329     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0001
    TIGR01662  3 vvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleel 74
                 + +D+Dg+           + ++++p+  +al ++k++G  v  vtN  g     e +++++ek+++ ++e+
  MMETSP1174-20130828|13521_1  8 IAFDIDGVFK---------AGRFFFPNSVRALSKAKQAGCPVCFVTNGGGGLNESEYMASLKEKLRQAAAEE 70
                 6788888888.........678899***********************976666788999999999988884 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.9
    TIGR01662   7 lDgtLiddvdyvteedeaelypevi 31 
                  +D + +    +++++d++e  + + 
  MMETSP1174-20130828|13521_1 191 FDAVVV----MCDPHDWFEALQAAV 211
                  555555....566666666554443 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0079
    TIGR01662 111 akesvvvGDavltDleaakrvGlat 135
                  ++  ++vGD+  +D+ +a ++G + 
  MMETSP1174-20130828|13521_1 348 SSSFWMVGDNPASDMALA-AMGDKN 371
                  57789***********99.788775 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06   0.00069       4     118 ..       7     120 ..       4     131 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1e-06
    TIGR01452   4 tfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnst.ksraeyakklaklGlnsvaeelvssalvaaalleraidankkvyviGeeGlreeldekGiryvGdpsekdkka 118
                  ++ fd dGv+  G    p + + l + ++ag  v fvtn       +ey+  l++   ++ aee  +sa ++ + l++ i ++  +      G  ee++++ i ++Gdp ek k++
  MMETSP1174-20130828|13521_1   7 SIAFDIDGVFKAGRFFFPNSVRALSKAKQAGCPVCFVTNGGGgLNESEYMASLKEKLRQAAAEE-EDSASIVEDRLDE-IGDDAMILSYTPMGEYEEFKTAQILLIGDPKEKVKAT 120
                  678************************************875267899*999986555545554.6888899999999.666777888889999****************998875 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.3e-06    0.0016      13      55 ..      10      52 ..       6      77 .. 0.88
   2 ?   -3.5   0.0       1.8   1.2e+03     154     179 ..     232     258 ..     229     263 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.3e-06
    TIGR01459 13 lDlwGvvidGqeayPGavealaklkaegktvylvsnssksvae 55
                 +D  Gv   G+  +P  v+al+k k++g +v +v+n +  + e
  MMETSP1174-20130828|13521_1 10 FDIDGVFKAGRFFFPNSVRALSKAKQAGCPVCFVTNGGGGLNE 52
                 8999********************************9865554 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.8
    TIGR01459 154 kvpflCanPDrvvv.sagrtrygaGel 179
                  +v +  +nPD      + ++r+g G +
  MMETSP1174-20130828|13521_1 232 RVCVHFSNPDIFWKaAHPQPRFGQGAF 258
                  566667899988751577899999975 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.08        54       9      49 ..      13      49 ..       7      80 .. 0.67
   2 ?    8.3   0.1   0.00041      0.28     200     255 ..     352     410 ..     344     412 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.08
    TIGR01458  9 sGvlydsdaksgvavpgsaeavkrlkraslkvrfvtnekke 49
                  Gv+           p+s+ a+++ k+a   v fvtn  + 
  MMETSP1174-20130828|13521_1 13 DGVFKAGRF----FFPNSVRALSKAKQAGCPVCFVTNGGGG 49
                 555443333....6799999****************97643 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00041
    TIGR01458 200 vmiGddlvddvGGaq..avGmrgvqvrtGkyrpsdee.kievkpdltvdslaeavdlil 255
                   m+Gd+  +d+  a   +    gv+vrtG y  s      +  +   vd +  avd+il
  MMETSP1174-20130828|13521_1 352 WMVGDNPASDMALAAmgDKNWSGVLVRTGVYDDSGLSsSCKCGAAAVVDDVEAAVDYIL 410
                  69********987752255678**********99865167899999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:01.11
# Mc/sec: 495.85
//
Query:       MMETSP1174-20130828|13525_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|13526_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 510.74
//
Query:       MMETSP1174-20130828|13527_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1159.90
//
Query:       MMETSP1174-20130828|13529_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-42  141.2   0.0    3.1e-18   62.9   0.0    5.2  5  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.1e-34  117.8   0.0    3.2e-10   37.8   0.1    7.0  7  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    4.2e-18   63.2   0.1    0.00012   19.7   0.0    6.7  7  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.6e-13   46.9   4.2     0.0012   15.0   0.0    5.2  5  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    4.1e-11   40.0   0.0    0.00072   16.1   0.0    4.2  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.3e-07   0.00027     416     497 ..       2      83 ..       1      89 [. 0.79
   2 !   41.1   0.0   1.5e-14   1.2e-11     477     666 ..      98     291 ..      81     291 .. 0.87
   3 !   14.9   0.0   1.2e-06   0.00096     446     566 ..     241     371 ..     218     375 .. 0.82
   4 !   62.9   0.0   3.8e-21   3.1e-18     355     562 ..     410     617 ..     400     621 .. 0.96
   5 !    7.2   0.0   0.00025       0.2     450     516 ..     607     673 ..     606     714 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.3e-07
    TIGR02917 416 aiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepd 497
                  +i+ L++ + ldp+ +++ l+L+    r+g ++ a+a+ ++   + p n  l++  +   ++++dl+ Ar +f k L  +p 
  MMETSP1174-20130828|13529_1   2 GIKLLKECLILDPKDGHSWLALARVEARRGSIAEARAVFRNGTSSCPKNVHLWQAWAVMEQKSGDLEAARRYFGKGLDADPC 83 
                  6777788888888888888888888888888888888888888888888888888888888888888888888888877775 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 1.5e-14
    TIGR02917 477 gkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadl.apdspellellgraqlaakd....lkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkp 666
                  + ++  +Are f  AL+  +++ + l+ LA+l+++++n+  A++ f +++  + +++ + +a a+l+ + gn ++a ++l+ka ++ p+++e  +a+a+   + g+l+++ ++l +++     +     +  +r  ++ kd    l+k ve +++++e  p+    +     v ++  + ++A+++ k++ +lkp
  MMETSP1174-20130828|13529_1  98 KVGNVTRARELFSLALQA-RQQPQVLVALAELEASTGNVSGAQELFRSAVLKKSEDVPLCRAWARLECKLGNIDTAYEILSKARRAFPQDVEVGIAMAKLEQRRGNLDRGRELLASISYHgSNSRLGGTLFNARVAIELKDippnLNKSVELLEEAVEKFPADHSLHQTFGTVLERTGDIPRARKAFKRSTTLKP 291
                  5577899*********96.667999*******************************************************************************************9854133444455666777777776333379******************************************999886 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.2e-06
    TIGR02917 446 efdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffp..A......lanLArldlqeknid..dAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpke 566
                  +++k +  +++  +k p++ sl+++ g ++   +d+ +Ar+af+ +  ++p   +  A      ++ + + + q+++i   +A+  fe  +++dp +  + +a+ +++ar+ n +ea  +le+ +++  ++
  MMETSP1174-20130828|13529_1 241 NLNKSVELLEEAVEKFPADHSLHQTFGTVLERTGDIPRARKAFKRSTTLKPSAPAyvAwglmeeRHHMIQGEKQKGKIRvvEARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKCTD 371
                  478999999**************************************999975431122222225677777888887753379999*************************99999999999988776665 PP

  == domain 4    score: 62.9 bits;  conditional E-value: 3.8e-21
    TIGR02917 355 alekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaek 562
                  +  +++d s l+ +lG   L++  +++A e +a+   + P+n  + +  ++++L ++++s+a   +++A+++++   +a  +  +   ++g++++a+a  +k +k+ p   +l++  g   +  + + +A++ f + ++ +p +++ l   A l+   +++ +A++  +k+l idp +    +a+a l++r+gn+e+a +++++ ++k
  MMETSP1174-20130828|13529_1 410 MSSANADVSFLIHSLGTLELQSARVAEAYEVFADGILRYPNNSYLLLGAALTELKMNEVSSARDLFRQAAAANSRHAHAWQAWGVMEFKEGNVERARALYEKGLKESPYHGALWQAYGMLEVSLEAYPRAQNLFSQGMERDPKNVKMLQAWACLENRIGDVVKARELIQKALMIDPWHGPCWTAYATLEERQGNTEAARRIYSEGIKK 617
                  666777888899*******************************************************************99999999******************************************************************************************************************9998877 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 0.00025
    TIGR02917 450 alaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqeknid 516
                  a+ +  + +kk p+   ly   g      +  ++Are fe+ L  +p ++p  ++ A+++++  n++
  MMETSP1174-20130828|13529_1 607 ARRIYSEGIKKVPNHGPLYRWFGEMEARLGRHERAREIFEQGLDADPLHAPMFHSYAEMEAKLFNVE 673
                  677888999*************************************************999866655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00093      0.76     156     193 ..       4      41 ..       2      50 .. 0.83
   2 !   27.3   0.0   6.4e-10   5.3e-07      62     225 ..      48     209 ..      44     215 .. 0.89
   3 !   14.1   0.0   6.5e-06    0.0053      49      99 ..     244     294 ..     240     297 .. 0.91
   4 !   14.8   0.0   4.1e-06    0.0033      82     163 ..     321     401 ..     306     443 .. 0.87
   5 !   37.8   0.1     4e-13   3.2e-10      38     193 ..     459     612 ..     451     621 .. 0.93
   6 !   21.6   0.0   3.4e-08   2.8e-05      45     124 ..     568     647 ..     563     647 .. 0.94
   7 !    5.5   0.0    0.0028       2.3     145     182 ..     632     669 ..     624     692 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00093
    TIGR02521 156 kyltralkidpkrpesllelaelklkkgqyaeAralle 193
                  k l++ l +dpk  +s l+la+++  +g +aeAra++ 
  MMETSP1174-20130828|13529_1   4 KLLKECLILDPKDGHSWLALARVEARRGSIAEARAVFR 41 
                  56888899999999999999999999999999998875 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 6.4e-10
    TIGR02521  62 pkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqk.kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakey 225
                  pk+ + ++a A++ q+ g+le+A ++f k+l  +p n+ v   +G     +  ++  A + f+ A+++ + +q       ++   ++ g++  a++ ++ a+ ++ +  +  ++ a+l++k g++  A ++l +  +  +q+ e    +++++++ g+ +  +e+
  MMETSP1174-20130828|13529_1  48 PKNVHLWQAWAVMEQKSGDLEAARRYFGKGLDADPCNPYVCHAWGLMEHTKVgNVTRARELFSLALQARQQPQVL---VALAELEASTGNVSGAQELFRSAVLKKSEDVPLCRAWARLECKLGNIDTAYEILSKARRAFPQDVEVGIAMAKLEQRRGNLDRGREL 209
                  78888999*************************************87655546*************998766655...555666899***************999999999*********************************9999999**999998776665 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 6.5e-06
    TIGR02521  49 kAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                  k  e le+A+e+ p+d + ++  + +++++g+  +A ++f+++ tlkp  +
  MMETSP1174-20130828|13529_1 244 KSVELLEEAVEKFPADHSLHQTFGTVLERTGDIPRARKAFKRSTTLKPSAP 294
                  666789*****************************************9866 PP

  == domain 4    score: 14.8 bits;  conditional E-value: 4.1e-06
    TIGR02521  82 ekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralk 163
                   +A + f+ +++ +p  g ++N YG+   + ++++eA   +e+ i+++  +  a+++  +g+  l++gd++ a++++++ ++
  MMETSP1174-20130828|13529_1 321 VEARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAK-CTDMAHVWHGLGTLDLRIGDVDAARSTFKEGIR 401
                  6899****************************************9875.68899***********************98764 PP

  == domain 5    score: 37.8 bits;  conditional E-value: 4e-13
    TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                  al+ l+ +++ +A++   +A ++++  a+a++a +++  ++g+ e+A + ++k+l+ +p  g++   YG+   +   y  A++ f++ +e    ++  + ++  +    ++gd+ ka++ +++al idp   +   + a l+  +g+  +Ar ++ 
  MMETSP1174-20130828|13529_1 459 ALTELKMNEVSSARDLFRQAAAANSRHAHAWQAWGVMEFKEGNVERARALYEKGLKESPYHGALWQAYGMLEVSLEAYPRAQNLFSQGMERD--PKNVKMLQAWACLENRIGDVVKARELIQKALMIDPWHGPCWTAYATLEERQGNTEAARRIYS 612
                  5666899999*****************************************************************************99865..677777888888899*******************************************9886 PP

  == domain 6    score: 21.6 bits;  conditional E-value: 3.4e-08
    TIGR02521  45 gdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfea 124
                  gd+ kA+e ++kAl +dp     + a A + +++g++e+A + + ++++  pn g ++  +G    + ++ e A + fe+
  MMETSP1174-20130828|13529_1 568 GDVVKARELIQKALMIDPWHGPCWTAYATLEERQGNTEAARRIYSEGIKKVPNHGPLYRWFGEMEARLGRHERAREIFEQ 647
                  7899******************************************************9999999999999999998886 PP

  == domain 7    score: 5.5 bits;  conditional E-value: 0.0028
    TIGR02521 145 alkagdtekaekyltralkidpkrpesllelaelklkk 182
                   +++g++e+a++ +++ l++dp  ++ + + ae++ k 
  MMETSP1174-20130828|13529_1 632 EARLGRHERAREIFEQGLDADPLHAPMFHSYAEMEAKL 669
                  57899*********************999999988765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07   0.00012      28     119 ..      27     119 ..       4     127 .. 0.87
   2 !    8.1   0.0   0.00054      0.44      62     117 ..      96     150 ..      86     166 .. 0.82
   3 ?    0.8   0.0     0.098        80      57      87 ..     265     295 ..     257     300 .. 0.81
   4 !    5.4   0.0    0.0038       3.1      33     119 ..     319     406 ..     313     415 .. 0.89
   5 !   13.2   0.2   1.5e-05     0.012      27     107 ..     427     507 ..     408     513 .. 0.81
   6 !   13.0   0.3   1.6e-05     0.014      27     117 ..     461     551 ..     451     565 .. 0.83
   7 !   11.1   0.0   6.5e-05     0.054      31     113 ..     567     649 ..     545     665 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-07
    TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaec.llalgekeeAlkaLklaieiaeek 119
                  +  +g  +eA+ +F+  +   p + + w ++a+  q+ ++ e A+  ++  + +d+ +p++  + +   ++++g+  +A++ + la++  ++ 
  MMETSP1174-20130828|13529_1  27 EARRGSIAEARAVFRNGTSSCPKNVHLWQAWAVMEQKSGDLEAARRYFGKGLDADPCNPYVCHAWGLMeHTKVGNVTRARELFSLALQARQQP 119
                  5578999*****************************************************999888653799**************9988765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00054
    TIGR02552  62 lqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                  + + ++ ++A++ ++la++++ ++p++++++ae     g+   A++ ++ a+ ++ 
  MMETSP1174-20130828|13529_1  96 HTKVGNVTRARELFSLALQAR-QQPQVLVALAELEASTGNVSGAQELFRSAVLKKS 150
                  446789999999999999975.6899999999999999999999999998875554 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.098
    TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddpr 87 
                    + +l ++++  +A++a+++ ++l++++p+
  MMETSP1174-20130828|13529_1 265 TFGTVLERTGDIPRARKAFKRSTTLKPSAPA 295
                  5688888999999999999999999999996 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0038
    TIGR02552  33 kyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyh.aaecllalgekeeAlkaLklaieiaeek 119
                  ++ eA++lF+l + +dp       + +a   +  +++eA+   ++  a++  d + v+h ++   l +g+   A++++k  i++ ++k
  MMETSP1174-20130828|13529_1 319 RVVEARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKCTDMAHVWHgLGTLDLRIGDVDAARSTFKEGIRRFDKK 406
                  5779**********************************************999888888357888**************999887665 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 1.5e-05
    TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlk 107
                   + q+ +++eA ++F+  ++  p++++ +lg a++  +++e + A++ +  aaa++  ++ +  + ++  ++ g+ e+A++
  MMETSP1174-20130828|13529_1 427 LELQSARVAEAYEVFADGILRYPNNSYLLLGAALTELKMNEVSSARDLFRQAAAANSRHAHAWQAWGVMEFKEGNVERARA 507
                  566788888888888888888888888888888888888888888888888888888888888888888888888888764 PP

  == domain 6    score: 13.0 bits;  conditional E-value: 1.6e-05
    TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                  ++ +  +++ A+ lF+  aa++   a+ w ++++   + ++ e+A+a Y+  ++ ++ + +   + +   + l+ + +A++ +   +e++ 
  MMETSP1174-20130828|13529_1 461 TELKMNEVSSARDLFRQAAAANSRHAHAWQAWGVMEFKEGNVERARALYEKGLKESPYHGALWQAYGMLEVSLEAYPRAQNLFSQGMERDP 551
                  566677999*****************************************99998887776666666777788888888887777777665 PP

  == domain 7    score: 11.1 bits;  conditional E-value: 6.5e-05
    TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                   g++ +A++l q   ++dp+    w + a    ++++ e A+ +Y+   +  +++   +   +e    lg+ e+A++ ++  +
  MMETSP1174-20130828|13529_1 567 IGDVVKARELIQKALMIDPWHGPCWTAYATLEERQGNTEAARRIYSEGIKKVPNHGPLYRWFGEMEARLGRHERAREIFEQGL 649
                  58899999999999**********************************99999888888889**************9998765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00089      0.73     418     483 ..       6      71 ..       2      89 .. 0.60
   2 !   10.9   0.0   2.4e-05      0.02     419     501 ..     109     191 ..      99     224 .. 0.84
   3 ?   -0.1   0.0     0.052        43     410     460 ..     241     291 ..     226     302 .. 0.79
   4 !   11.4   0.1   1.8e-05     0.015     103     161 ..     435     493 ..     430     503 .. 0.91
   5 !   15.0   0.0   1.4e-06    0.0012     103     197 ..     503     597 ..     498     616 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00089
    TIGR03939 418 leellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqae 483
                  l+e l   P ++  +lala ve+ Rg   +A   +++  s  p+++ + ++ a + ++ ++ + a 
  MMETSP1174-20130828|13529_1   6 LKECLILDPKDGHSWLALARVEARRGSIAEARAVFRNGTSSCPKNVHLWQAWAVMEQKSGDLEAAR 71 
                  455555556666666666666666666666666666666666666666555555555555554444 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.4e-05
    TIGR03939 419 eellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedkqvqr 501
                    l+ +A   +++ +alae+e++ g+ + A++l++ a   + +++ + r+ a +  +l++ ++a++++ + + ++P+d +v  
  MMETSP1174-20130828|13529_1 109 FSLALQARQQPQVLVALAELEASTGNVSGAQELFRSAVLKKSEDVPLCRAWARLECKLGNIDTAYEILSKARRAFPQDVEVGI 191
                  56777788889999999999999999999999999999999999999999999999999999999999999999999987654 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.052
    TIGR03939 410 dlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslep 460
                  +l++  + lee+ ++ P++ sl  + + v +  g   rA +++k+   l+p
  MMETSP1174-20130828|13529_1 241 NLNKSVELLEEAVEKFPADHSLHQTFGTVLERTGDIPRARKAFKRSTTLKP 291
                  567777888888888888888888888888888888888888888877755 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 1.8e-05
    TIGR03939 103 dkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerleala 161
                  ++A e++ + + r+P+n  lllG alt++ +++ ++A +  ++++++++++a+  +a++
  MMETSP1174-20130828|13529_1 435 AEAYEVFADGILRYPNNSYLLLGAALTELKMNEVSSARDLFRQAAAANSRHAHAWQAWG 493
                  67899999999****************************************99999875 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 1.4e-06
    TIGR03939 103 dkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelvei 197
                  + A +ly+k l+ +P    l+ ++ + ++  +++ +A++  ++  er+p+++++l+a+a + ++ +d ++a + iq+al  +P     ++++ ++
  MMETSP1174-20130828|13529_1 503 ERARALYEKGLKESPYHGALWQAYGMLEVSLEAYPRAQNLFSQGMERDPKNVKMLQAWACLENRIGDVVKARELIQKALMIDPWHGPCWTAYATL 597
                  67999*****************************************************************************9887777776655 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00016      0.13     354     504 ..       6     156 ..       3     207 .. 0.81
   2 !    9.3   0.0    0.0001     0.084     383     465 ..     322     405 ..     240     410 .. 0.86
   3 !   16.1   0.0   8.8e-07   0.00072     327     491 ..     482     646 ..     451     665 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00016
    TIGR00990 354 lsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqy.klgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelkpis 504
                  l+ ++ ldP+  +s++  a + + +g+  +a   f +     +++  ++   a ++   g+ + a + + k  d dp + +     + +++ k+g++  +  lf+ a +   + P+v    ael     + + a e f  a+    e  p++
  MMETSP1174-20130828|13529_1   6 LKECLILDPKDGHSWLALARVEARRGSIAEARAVFRNGTSSCPKNVHLWQAWAVMEQKSGDLEAARRYFGKGLDADPCNPYVCHAWGLMEHtKVGNVTRARELFSLALQA-RQQPQVLVALAELEASTGNVSGAQELFRSAVLKKSEDVPLC 156
                  56677899999999999999999999999999999999999999999999999999999999999999999999999887776666766543899999999999999876.67799999999999988888888888888876555555555 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0001
    TIGR00990 383 kaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidld.pdfifsyiqlavlqyklgsiassealfrrakkkfpe 465
                  +a   f+  +k d+    +y   + ++  + +f+ea    ++ i    +d    +  l+ l  ++g ++ + ++f++ +++f++
  MMETSP1174-20130828|13529_1 322 EARRLFELGIKADPSHGPLYNAYGAMEARHRNFQEARLVLERGIAAKcTDMAHVWHGLGTLDLRIGDVDAARSTFKEGIRRFDK 405
                  677889************************************998762577888999*************************98 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 8.8e-07
    TIGR00990 327 kekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfd 491
                  + + a a++  G+++f  g+ e a a  +k +   P     +    ++ + l++  +a++ f + +++d+++ ++    a l+   g+  +a    +k+  +dp +   +   a l+ ++g+ + +  ++++ +kk p+   +y +++e+       ++a e f+
  MMETSP1174-20130828|13529_1 482 NSRHAHAWQAWGVMEFKEGNVERARALYEKGLKESPYHGALWQAYGMLEVSLEAYPRAQNLFSQGMERDPKNVKMLQAWACLENRIGDVVKARELIQKALMIDPWHGPCWTAYATLEERQGNTEAARRIYSEGIKKVPNHGPLYRWFGEMEARLGRHERAREIFE 646
                  4578999999***********************9999887777778888999999**********************************************************************************************9776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.18s 00:00:00.98 Elapsed: 00:00:00.76
# Mc/sec: 1278.21
//
Query:       MMETSP1174-20130828|13530_1  [L=1055]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   21.8   0.0    7.7e-05   20.5   0.0    1.6  2  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family
     0.0013   15.9   0.2     0.0023   15.0   0.1    1.4  1  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
     0.0015   15.2   0.1     0.0023   14.6   0.1    1.2  1  TIGR01886 dipeptidase: dipeptidase PepV
  ------ inclusion threshold ------
      0.018   11.6   0.0      0.038   10.5   0.0    1.5  1  TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
      0.031   11.2   0.2      0.048   10.7   0.1    1.2  1  TIGR01887 dipeptidaselike: putative dipeptidase


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.7     3e+03      60      92 ..     200     232 ..     195     234 .. 0.78
   2 !   20.5   0.0   9.4e-08   7.7e-05      47     117 ..     890     965 ..     851     973 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 3.7
    TIGR02909  60 mlkkfGisyraaGeniaagnstvekvvealmns 92 
                  m+ +  +  ++  +++a +++ ++++ + ++n 
  MMETSP1174-20130828|13530_1 200 MIPQLMVMMKMLPDDVADKDTIADQASDKWLND 232
                  566666677777888998889999999999996 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 9.4e-08
    TIGR02909  47 fshtsPtyGspfdmlkkfGisyraaGeniaagnstvekvvealmnseg.....hraniLspeyteiGvglvksgsy 117
                  ++h  P+   + d ++k+Gi + +aGe ia+ ++t+e +v+ ++  +g      ra +L+p+ +  G++   + s 
  MMETSP1174-20130828|13530_1 890 MGHVGPNNDRAADRITKYGIWFDIAGEVIAYREKTPEGIVRQILVCDGepkrsDRAVLLNPNMKVCGISNQTHPSL 965
                  6899************************************999987763332258889999999999987766555 PP

>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.8e-06    0.0023       4     138 ..     241     379 ..     238     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.8e-06
    TIGR01910   4 lkdlisipsv..nppa.eneeeianyikdlLrelgfevdvieiekdrlkklsrivvketgng.reksLilngHiDVVpaGdve..kWktdPFkpvekd.gklyGRGatDmKgglvallyAlkalreaglklegdiilqavvd 138
                  l dl +ips   np   ++   +a+ +k+lL++ g +  +++   +     +  vv  +g+  +++++ + + + V ++ d +   W  +PF p+  d g     Ga+  K+ +v  + A+k + ++    +  + l+ vv+
  MMETSP1174-20130828|13530_1 241 LDDLCAIPSIakNPDHvKDVDAAADKVKQLLNDAGADNVIVDQGTGGGA--P-FVVGDIGHDeNKPTVLIYANYTVSDPDDPAggTWAGEPFVPITDDdGNFTAKGASEDKAHVVTPIAAVKSILDTHGADHLPVNLKVVVG 379
                  6788889998334432144455688999999999977666665555555..4.678888876156799999*****9988865337********9976166778**********************9999999898888886 PP

>> TIGR01886  dipeptidase: dipeptidase PepV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.8e-06    0.0023      91     132 ..     319     361 ..     232     380 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.8e-06
    TIGR01886  91 paGeGwesdpfepeike.GkiyarGasddkGpslaayyalkil 132
                  paG  w  +pf p  ++ G+  a+Gas+dk   ++   a+k +
  MMETSP1174-20130828|13530_1 319 PAGGTWAGEPFVPITDDdGNFTAKGASEDKAHVVTPIAAVKSI 361
                  9************99988*************999988888754 PP

>> TIGR01880  Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.7e-05     0.038      58     128 ..     289     361 ..     231     376 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.7e-05
    TIGR01880  58 kvvvlltwkGsnPelpsillnshldvv.Pvfk..ekWthdPfsafkdeeGeiyarGaqdmkcvgvqyleavrkl 128
                  +++v +   G + + p++l+++   v  P       W+ +Pf    d++G+  a+Ga ++k+  v  ++av+ +
  MMETSP1174-20130828|13530_1 289 APFV-VGDIGHDENKPTVLIYANYTVSdPDDPagGTWAGEPFVPITDDDGNFTAKGASEDKAHVVTPIAAVKSI 361
                  4444.4556899999999998876665244332268*********************************99974 PP

>> TIGR01887  dipeptidaselike: putative dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.8e-05     0.048      57     124 ..     292     364 ..     235     379 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.8e-05
    TIGR01887  57 yagyielgqgeellgilgHlDVV....PeGdgWtsppfeaeikd.gkiygRGvlDdKGPtlaalyalkilkel 124
                  ++g i  ++++ ++ i +   V     P+G  W  +pf +  +d g+  ++G+++dK  +++   a+k++ ++
  MMETSP1174-20130828|13530_1 292 VVGDIGHDENKPTVLIYANYTVSdpddPAGGTWAGEPFVPITDDdGNFTAKGASEDKAHVVTPIAAVKSILDT 364
                  5555555555555555555555343349**********99777659**********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.17s 00:00:00.89 Elapsed: 00:00:00.81
# Mc/sec: 1719.12
//
Query:       MMETSP1174-20130828|13531_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1022.92
//
Query:       MMETSP1174-20130828|13534_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1616.06
//
Query:       MMETSP1174-20130828|13536_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1323.03
//
Query:       MMETSP1174-20130828|13537_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-55  185.1   2.4    3.4e-53  178.5   1.7    2.0  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
      1e-06   26.2   1.6    0.00081   16.7   0.0    2.4  2  TIGR00073 hypB: hydrogenase accessory protein HypB


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   1.7   1.7e-56   3.4e-53      11     338 ..       2     317 ..       1     321 [. 0.86

  Alignments for each domain:
  == domain 1    score: 178.5 bits;  conditional E-value: 1.7e-56
    TIGR02475  11 GflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqw.peirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaag.lekvraeiaeelpravkiveaeeGevdaevllGlgaaaeedlearkshhdleeeeeehdhd.efdsvvvdlgevadvdalaerleklveee..dvlrikGfvevegkplrllvqavGkrvdsyy.drawka..eearstrlvviGlkdldeaai 338
                  GflGaGkttl++hll   +G r a+i nefG++Gid +i+++   e+ + eei+e+ nGcicctv  d++ tl+kl  +  + d i+iet+Gla p p+ q+f    +ir   t+d +vav d++ +      e+++                 +e+   +qla ad v+lnk dl+ a++ l+k++a i++ ++ +v i+ +++ +vd ++l+G+ga   + + + +    + + + eh+hd  + sv v++     + al++ + +lv+++  d++r kG ++v+g   + + q+vG  ++  + d aw+a  +e r+ r+v iG++ l+++++
  MMETSP1174-20130828|13537_1   2 GFLGAGKTTLLNHLLTGDHGMRFAIIENEFGEVGIDEKIINQNLKEKID-EEIIEVMNGCICCTVRGDLVETLKKLARKVANFDGIIIETTGLADPAPVAQTFFVdEDIRMLYTLDCIVAVCDAKHLVVRLDDEKPEG----------------VENEAVEQLAFADRVLLNKVDLVPAEKeLAKIEARIRT-INPHVPILRCTNSQVDWTLLIGVGAFDLDRVLTFEPEFLT-DLDAEHQHDtSVSSVSVKFEGELLITALNNWIGELVQTKgaDLFRYKGVMAVKGSANKYVFQGVGMLFKGEFsDLAWNAqiNEPRECRFVFIGRN-LNKKEL 317
                  9*****************************************9888665.579************************************************9866268***************998865433333333................33334479***************997527888888876.66689*******************9766665554444432.45789999736899*****9888999*********99864489*************************9766499**9844589*********99.998876 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2   0.00015      0.32      39     120 ..       4      92 ..       1      98 [. 0.66
   2 !   16.7   0.0     4e-07   0.00081     155     196 ..     147     187 ..     127     193 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00015
    TIGR00073  39 iGsGktlllekliealkkevkiavieGDlitk.aD....aeRl.rkagvkaiqintGkeC.hLdaklvadalkdl.elddkdlllienvG 120
                   G+Gkt+ll++l++  +  +++a+ie +      D     + l +k + ++i++  G  C  +  +lv+   k   ++ + d ++ie  G
  MMETSP1174-20130828|13537_1   4 LGAGKTTLLNHLLTGDHG-MRFAIIENEFGEVgIDekiiNQNLkEKIDEEIIEVMNGCICcTVRGDLVETLKKLArKVANFDGIIIETTG 92 
                  69*********9987655.9*****96653321230011334425678889999888765268888998443322134566999999876 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 4e-07
    TIGR00073 155 fkeadlilinkvdlveavdadvekvkadvkkinPeveiilvs 196
                  ++ ad +l+nkvdlv+a + ++ k++a +++inP+v i++  
  MMETSP1174-20130828|13537_1 147 LAFADRVLLNKVDLVPA-EKELAKIEARIRTINPHVPILRCT 187
                  6789***********98.789*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.48
# Mc/sec: 1289.64
//
Query:       MMETSP1174-20130828|13540_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-06   22.6   0.0      1e-05   22.5   0.0    1.0  1  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.4e-09     1e-05     256     315 ..      11      70 ..       5      72 .] 0.86

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.4e-09
    TIGR00887 256 eedevekaskevevpkasssdfvtkfskrkhgklLlGtavsWflLDiafYgvnLnqkvil 315
                  e d+ +++ + ++vp   +s + +  +kr     L+ t  +Wf+ D+ +Ygv+L    i+
  MMETSP1174-20130828|13540_1  11 EADDDDDMDAGQTVPSRTTSPLKEVLKKRETWVNLVATGGTWFIYDVVYYGVGLLGPRII 70 
                  5566678888889999999*99999999999**********************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|13539_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 746.78
//
Query:       MMETSP1174-20130828|13538_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1159.98
//
Query:       MMETSP1174-20130828|13541_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.81
# Mc/sec: 1271.01
//
Query:       MMETSP1174-20130828|13542_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-37  127.1   0.0    1.6e-37  126.9   0.0    1.0  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
  ------ inclusion threshold ------
      0.014   12.4   0.0      0.018   12.1   0.0    1.1  1  TIGR02904 spore_ysxE: spore coat protein YsxE


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.0     8e-41   1.6e-37      49     192 .]       2     146 ..       1     146 [. 0.96

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 8e-41
    TIGR00493  49 lfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGa.qGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvltk 192
                  ++le   p   i++y+ s GG ++ Gl+i d m++i   v tic+G a sm a+l+aaGa+G r ++p+sr m+h+p  G+ +  ++d+ iqake  + +++l e+la++t ++ ++i  ++er++++s  ea+ +Glid +++k
  MMETSP1174-20130828|13542_1   2 IYLEMARPGVPITMYVCSGGGQVYPGLSIIDVMEYISSPVHTICVGHAESMAAILVAAGAHGHRHSMPHSRFMLHEPSVGMgRNTTTDLLIQAKEFEQTRERLVEVLAKHTTRTRDTIISEIERNHYMSPTEATCFGLIDGIIAK 146
                  57889999999******************************************************************8887367789******************************************************9975 PP

>> TIGR02904  spore_ysxE: spore coat protein YsxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     9e-06     0.018     112     163 ..      84     136 ..      74     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9e-06
    TIGR02904 112 rktvkeeevkeeelkkhyerlkskwerekevl.eefiveaEakrYmsPFeLqa 163
                  r+t  +  ++  e ++ +erl +   ++++ + +  i e+E+++YmsP e ++
  MMETSP1174-20130828|13542_1  84 RNTTTDLLIQAKEFEQTRERLVEVLAKHTTRTrDTIISEIERNHYMSPTEATC 136
                  66777888999999999999999998888766156789**********99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 749.36
//
Query:       MMETSP1174-20130828|13546_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|13543_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1174-20130828|13544_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-108  360.2   0.1   4.9e-108  360.1   0.1    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
   2.2e-103  344.7   0.4   2.6e-103  344.5   0.3    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-86  289.2   0.7    1.5e-86  289.0   0.5    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.4e-78  261.9   0.2    2.8e-78  261.7   0.2    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-65  219.9   0.2    1.5e-65  219.6   0.1    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.4e-64  215.5   0.0    4.2e-64  215.2   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    9.1e-64  213.7   0.1      1e-63  213.6   0.1    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.4e-63  212.0   1.3    3.8e-63  211.9   0.9    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.1e-60  202.8   0.3    2.6e-60  202.5   0.2    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.8e-54  182.6   0.0    3.4e-54  182.3   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    7.8e-50  167.7   0.0    9.4e-50  167.5   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    6.2e-49  164.8   0.1    7.4e-49  164.6   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    7.6e-38  127.5   0.1    9.6e-38  127.1   0.1    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.1e-35  121.0   0.1    1.6e-35  120.5   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.5e-32  111.0   0.7    2.9e-32  110.1   0.5    1.4  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.3e-31  107.0   0.1    3.5e-31  106.4   0.1    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.6e-31  106.8   0.2    3.5e-31  106.3   0.1    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    9.8e-30  101.6   0.3    1.7e-29  100.8   0.2    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.4e-29  101.1   0.2    2.3e-29  100.4   0.1    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      5e-29   99.2   0.3    7.6e-29   98.6   0.2    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.5e-28   97.8   1.6    1.8e-27   94.3   1.1    2.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.9e-27   94.1   0.0    2.9e-27   93.5   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.1e-27   92.8   0.1      1e-26   91.8   0.0    1.5  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.3e-26   91.3   0.3    3.9e-26   89.8   0.2    1.6  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.9e-26   90.3   2.0    2.6e-25   87.2   1.4    1.9  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    7.8e-26   89.0   0.9    2.1e-25   87.5   0.6    1.5  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.1e-25   88.0   0.4    2.3e-25   87.0   0.2    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      4e-25   86.3   0.1    1.1e-24   84.9   0.1    1.6  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      7e-25   85.7   0.2    1.7e-24   84.5   0.2    1.5  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-24   84.9   2.0    1.9e-24   84.2   1.4    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.4e-24   83.1   0.9    1.4e-23   81.4   0.6    1.7  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.5e-24   82.5   0.2    3.3e-23   80.4   0.2    1.8  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.6e-23   81.4   0.3    2.2e-23   80.9   0.2    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.8e-23   80.9   0.2    1.4e-15   55.1   0.1    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.1e-23   80.4   2.0    9.5e-23   78.8   1.4    1.7  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.8e-22   77.0   1.7    1.4e-21   74.8   1.2    1.8  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.7e-21   73.3   0.0    2.3e-21   72.9   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.7e-20   70.3   0.2    3.6e-20   69.9   0.2    1.1  1  TIGR00955 3a01204: pigment precursor permease
    3.3e-20   69.9   0.3    1.6e-12   44.6   0.2    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.7e-20   70.1   4.2      6e-19   66.5   2.9    2.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      2e-19   67.8   1.2    4.5e-19   66.6   0.8    1.5  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    6.1e-19   66.2   0.1      1e-18   65.5   0.1    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.2e-18   65.3   0.3    6.4e-10   36.7   0.1    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.8e-18   64.9   0.4    1.1e-17   62.3   0.3    1.9  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.3e-18   64.4   0.3    1.3e-17   62.0   0.1    2.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-18   62.1   0.1    3.3e-18   61.8   0.1    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    1.2e-17   62.2   0.3    1.7e-17   61.7   0.2    1.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.1e-16   57.5   0.2    2.2e-16   56.5   0.2    1.4  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      3e-16   56.9   0.0    1.7e-09   34.7   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.9e-15   54.5   0.9    7.1e-15   52.6   0.6    1.8  1  TIGR01288 nodI: nodulation ABC transporter NodI
    2.9e-15   53.5   0.2      4e-15   53.1   0.2    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.8e-13   47.8   1.4    2.3e-12   44.8   1.0    2.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.8e-13   45.9   0.1    1.3e-12   45.2   0.1    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-11   41.8   0.0    2.7e-11   40.5   0.0    1.5  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.2e-11   41.6   0.0    1.6e-11   41.2   0.0    1.1  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.3e-10   37.7   2.0    1.8e-09   35.3   1.4    1.9  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.2e-07   27.3   0.2      3e-06   23.5   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
      0.032    9.9   0.0      0.049    9.3   0.0    1.3  1  TIGR02746 TraC-F-type: type-IV secretion system protein TraC


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.1   0.1  6.9e-110  4.9e-108     422     711 .]       1     298 [.       1     298 [. 0.97

  Alignments for each domain:
  == domain 1    score: 360.1 bits;  conditional E-value: 6.9e-110
    TIGR00958 422 sFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGl.....tkte.deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                  +F+LY  q+g  + +L  ++s+ + a+Gas+++Fe +dR P + ++g   p++++ ++ F+ V F+YP+r d+pvl +  +t++  ++valVG sG+GK tv++ll +lY+Pt+G+++l  +++++++  yl+  +alV+qEPvlf+ s+reNi YG+     ++++ +  vta+ak ana++F++++++gydt vge+G  lsgGqkqriAiARAL+ +PrvL+LDeAtSALDae+e+l+q   +k + +rt ++iahrLstv +adki+v+ + +v + Gth++L ++++ y+ lv
  MMETSP1174-20130828|13544_1   1 AFVLYVSQIGASLATLAGLFSSFMGAIGASQRIFEIIDRVPLILNEGGIVPDTDSSRICFSSVCFAYPTRLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGClargdKQVPdEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGaiDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLV 298
                  6************************************************************************************************************************************************************955554456656689**********************************************************************98889999********************************************9997 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5   0.3  3.6e-105  2.6e-103     279     575 ..       1     301 [.       1     302 [. 0.96

  Alignments for each domain:
  == domain 1    score: 344.5 bits;  conditional E-value: 3.6e-105
    TIGR02204 279 qfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeev......eaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                  +fvly   +++sl++l+ +++    a Ga +r++e+++  + i +  +   +p   +++i f +v fayP+r d ++ld++dlt+++  tvalvG sG Gk+t+++lllr y+P+sG+i l+  ++ +l+p+ lr ++alv+q+++lfa+s++eni yG +   d++v      +a ak a+ad+f+ ++ eGydt++Gergv+LsGGqkqriaiara++ + ++LLLdeatsaLdaese+lvq a++++m grtt++iahrL+tv++ad+ivv+d+  + ++Gth+eL+ +++ y+ l++ q
  MMETSP1174-20130828|13544_1   1 AFVLYVSQIGASLATLAGLFSSFMGAIGASQRIFEIIDRVPLILN--EGGIVPDTDSSRICFSSVCFAYPTRLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLARGDKQVpdegavTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQ 301
                  69*************************************999975..67789999********************************************************************************************************998888775322222678999***********************************************************************************************************************9987 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.0   0.5   2.1e-88   1.5e-86     277     570 ..       2     302 ..       1     304 [. 0.94

  Alignments for each domain:
  == domain 1    score: 289.0 bits;  conditional E-value: 2.1e-88
    TIGR02203 277 fitamlalikplksLtnvsaklqkglaaaesvfallDspp.ekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgel....eevdea.eveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiqf 570
                  f+  + ++ ++l  L+ + +++   + a++++f+++D+ p   +eG  +++    ++ f +v f yp + d+++ld+++l++++ ++valvG sG Gk+t+++ll R yep+sG i l  +++ +l+ + LR  +alv+q+ vLF  +i en+ Yg l    ++v+++  v ++++ a++ ++v +  eG dt vGe+g++LsGGq+qR+aiaRal+ +  +L+LDeatsaLD+ese lvq a+++ m gRtt++iahRLst+ +aD+ivv+d+  + ++GtheeLl+r   Y  L k q+
  MMETSP1174-20130828|13544_1   2 FVLYVSQIGASLATLAGLFSSFMGAIGASQRIFEIIDRVPlILNEGGIVPDTDSSRICFSSVCFAYPTRlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLargdKQVPDEgAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQM 302
                  66667788899999999999*****************9762689***********************9769************************************************************************************976445556654427999999**********************************************************************************************************************9987665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.7   0.2   3.9e-80   2.8e-78     399     693 ..       1     302 [.       1     303 [. 0.91

  Alignments for each domain:
  == domain 1    score: 261.7 bits;  conditional E-value: 3.9e-80
    TIGR01846 399 afnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteassagkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdniala.....kPaisee.kviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                  af ++  ++ + +  la l+  f  +  a +r+ +i+d+     ++g +   + + +i f+ + f y      +vl+n+ l i++ +++ +vG+sG Gk+t+  ll rly P  G + +  ++++ ++P+ lr  +++v qe vlf  sir+ni+ +     + ++++e  v a+ak+a a +f+++  +Gy+t vge+G+ lsGGq+qria+aral++nPr+l+ldeatsald+ese++++  +++   grt +iiahrlstv +ad+i+v+++  +++sG+heell++  +y +l ++q 
  MMETSP1174-20130828|13544_1   1 AFVLYVSQIGASLATLAGLFSSFMGAIGASQRIFEIIDRVPLILNEGGIVPDTDSSRICFSSVCFAYPTRlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGclargDKQVPDEgAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQM 302
                  566777888888889999999999999999999999998666666677666666789**********7652568********************************************************************************853222226677776368899****************************************************************************************************************************996 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6   0.1   2.1e-67   1.5e-65     478     710 .]      58     299 ..      51     299 .. 0.93

  Alignments for each domain:
  == domain 1    score: 219.6 bits;  conditional E-value: 2.1e-67
    TIGR03796 478 velrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltl.....wdetipeedlvrA.akDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710
                  + ++ v f+y ++l+ p++++f+l++++ + vAlvG+sG Gk t+  l+  lyep+sG+i++ +++ ++++ + l+ ++alv q+ vlf++++r+n+        d+ +p+e  v+A ak A  ++ +++ ++gy++ + e g  lsGGq+qR+ iARaL+ nP +L+lDEatsaLDae E+ ++ ++ +   g t++i+aHRLst+ ++d+i+v+++ +v + GtHeell+++ +Y++L++
  MMETSP1174-20130828|13544_1  58 ICFSSVCFAYpTRLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYgclarGDKQVPDEGAVTAvAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAmiGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVK 299
                  6678899***6689**********************************************************************************8642222269*****98887725667888889************************************************************9864488*********************************************96 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   5.9e-66   4.2e-64     283     529 .]      19     273 ..      10     273 .. 0.93

  Alignments for each domain:
  == domain 1    score: 215.2 bits;  conditional E-value: 5.9e-66
    TIGR02857 283 qyHakaegvaaaealvevldaeeqpeaekapltaaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseae......vkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                   +   + ++ a++ ++e++d+ + +++e   +++++ss++ ++ v +ay+ r   p+l++++lt++  ++valvG+SG GK+t+++lll++ ept+G+i ++++++++l+++ +r ++a v+Q+P+lf+++++eni  ++    +++      v ++++ a++d++v +  +g++t++Gerg +LSgGq+qR+a+Aral+ + ++lllDE t++LDae+e+ v+ a+++++ grt++++aHrl+++ +adkivv+
  MMETSP1174-20130828|13544_1  19 LFSSFMGAIGASQRIFEIIDRVPLILNEGGIVPDTDSSRICFSSVCFAYPTRLdvPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLARGDKQvpdegaVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVI 273
                  5666688999**********99999999999******************888669*********************************************************************************966554444443445559999999********************************************************************************************975 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.6   0.1   1.4e-65     1e-63     418     694 ..      11     293 ..       1     295 [. 0.86

  Alignments for each domain:
  == domain 1    score: 213.6 bits;  conditional E-value: 1.4e-65
    TIGR03375 418 aPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.....aa.edeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlealkk 694
                  a+la lagl++ +  a  a +++ e++++     +e  ++  +  + +i +++v f+Yp + + ++L+n  l+i+    va++G+ G GK+t++ lll+lyept+G+++l  ++i++++p+ lr ++++v+q+++Lf+ ++r+Ni++g       ++ ++ ++ ++a++a +++fv +  +G+d+++gerG  LSgGQ+q +a+aRal+ +p++llLDE tsalD++se+ +  ++ +++ ++T v+++Hr s +  +d+i+v+d+ ++   G+++e+l++ +k
  MMETSP1174-20130828|13544_1  11 ASLATLAGLFSSFMGAIGASQRIFEIIDRVPLILNEGGIVPDT-DSSRICFSSVCFAYPTRlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLargdkQVpDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQK 293
                  5666666666666666666666666666544444444444433.356899********8773679********************************************************************************99865112223414446788999**************************************************************************************************************998876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   0.9   5.4e-65   3.8e-63     396     686 .]       1     302 [.       1     302 [. 0.93

  Alignments for each domain:
  == domain 1    score: 211.9 bits;  conditional E-value: 5.4e-65
    TIGR03797 396 afntafgsflkavtslaetlievlavvplyerakPileaepEv.deekvdpgkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsilenia......ggasltldeawea.armagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQl 686
                  af+  ++++ +++ +la+ +++ + ++ + +r+  i++  p + +e  + p++ s +i  ++v+F+Y +     vLd+  l+i++ + va+vG+SG GK t++ lLL   +P+sG++    +++++l+ + +R  +  V Q+  l++ si eni+      g++++  + a +a a+ a  ++ + +   g  T++ e g  lSGGQ+QR+ iAral+  Pr+ll+DEATSALD ++ ++V  +++k  + R  ++iAHRLST++nad+i+v+++  v+++G++eeLl+++  +++l++RQ+
  MMETSP1174-20130828|13544_1   1 AFVLYVSQIGASLATLAGLFSSFMGAIGASQRIFEIIDRVPLIlNEGGIVPDTDSSRICFSSVCFAYPTRlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICygclarGDKQVPDEGAVTAvAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRttVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQM 302
                  6888899999******************************976378899******************7652678********************************************************************************944444344567777787762678889999**************************************************************977755449**********************************************8 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5   0.2   3.6e-62   2.6e-60     335     570 ..      58     301 ..      25     315 .. 0.89

  Alignments for each domain:
  == domain 1    score: 202.5 bits;  conditional E-value: 3.6e-62
    TIGR01192 335 vefrdisfefanssq..gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlg.....redatde.evveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570
                  + f  + f ++   +   + +  ++++   tva+vg +g gktt++ ll r+y+p+sg i++   +i+ ++   lr ++a v q+  l+  sireni  g      ++  de  v + ak a a +f+ + ++gydt+vgerg rlsgg++qr+aiara++ n  +l+ldeatsald e+e  v+ aid     rtt iiahrlstv +ad ++ +d+  + + g+ +el  +  +++ l+++ 
  MMETSP1174-20130828|13544_1  58 ICFSSVCFAYPTRLDvpVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGclargDKQVPDEgAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQ 301
                  667777777776543113456788999999*******************************************************************9872221123333331466778999**********************************************************************************************************************9974 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   0.0   4.8e-56   3.4e-54     472     707 ..      56     299 ..      44     300 .. 0.90

  Alignments for each domain:
  == domain 1    score: 182.3 bits;  conditional E-value: 4.8e-56
    TIGR01193 472 gdievndvsysyG..ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllg.....akenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                  + i ++ v + y   +  +vl++ +l+i++n +++lvG sG Gk+t++ ll+++++++sG+i+l+++++++++ + lr +++ + qeP++f+ si en+  g      k+  ++  ++++ +ia+ ++ + +++ Gy+t + e +  +sgGqkqr+a+aral+++ +vl+lde+ts ld   e+ +   +   +  +t + +ahrls   ++dki+v+d+  + ++G+h+ell++   y++l++
  MMETSP1174-20130828|13544_1  56 SRICFSSVCFAYPtrLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGclargDKQVPDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDkAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVK 299
                  56778888888862256789******************************************************************************97652211144555667899999***********************************************************999977555431466899999************************************9999986 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.0   1.3e-51   9.4e-50     272     542 ..      11     289 ..       3     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: 167.5 bits;  conditional E-value: 1.3e-51
    TIGR01842 272 aPidqaievWkqfsaarkaykrlkelleelpareea.lklPepe.gelevenvslvppee.kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaenia.....Rfeena.daekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                  a + ++ + + +f++a  a +r+ e+++++p   ++   +P+ +  ++  ++v ++ p+    ++l + ++++++  ++a++G+sg Gk++++ ll+  ++p+sG++ l + ++++ +  +l  ++  + q+  Lf+ ++ eni+     R ++++ d+ +v + ak+a++ ++++++ +GYdt +ge+G  LsgGq+qRia+aRal  +P++++LDe  + LD+e e  +  a+ ++   ++t+v+i+hr s +  +dki+v+++ ++++ G++ee+l+
  MMETSP1174-20130828|13544_1  11 ASLATLAGLFSSFMGAIGASQRIFEIIDRVPLILNEgGIVPDTDsSRICFSSVCFAYPTRlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICygclaRGDKQVpDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI-GRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLS 289
                  556677788999*******************876664667876526899*****9988772569*******************************************************************************9644443877776255578889**********************************************************************99865.778899*****************************9986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0     1e-50   7.4e-49     287     530 .]      13     261 ..       1     261 [. 0.84

  Alignments for each domain:
  == domain 1    score: 164.6 bits;  conditional E-value: 1e-50
    TIGR02868 287 laalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlr...larpda..tdeellaaLer.vgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                  la l+  + ++  +  a +Ri e++d  +      ++      +++ +++++ + ++yp+     vl++ +l++++   va+vG sG GK+t+++ll++l +p +G++tl + ++++l+ s +r +++++aq++ lF+t++reN+    lar+d    de + +a+++ +   + + ++ +G+dt +ge+g rlSGG++qR+a+ARaL+ + +vllLDE t  LDae e+ +  ++ +a+ grt+v+++hrl
  MMETSP1174-20130828|13544_1  13 LATLAGLFSSFMGAIGASQRIFEIIDRVPLI---LNEGGIVPDTDSSRICFSSVCFAYPTRLDvpVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICygcLARGDKqvPDEGAVTAVAKiANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRL 261
                  6677777778888888999999999888222...222222222256789**********986657*******************************************************************************9633366665444777766666651566778899**************************************************999999999*************96 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.1   1.4e-39   9.6e-38    1228    1510 ..       5     291 ..       2     300 .. 0.87

  Alignments for each domain:
  == domain 1    score: 127.1 bits;  conditional E-value: 1.4e-39
    TIGR00957 1228 yslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieet.appsswpksgrvefrnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldp..f....sqysdeevwlal.elahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqr 1510
                   y  q+ a l  l  + s +   i a +r+ e        p  ++e    p++  +s r+ f   ++ y   ld+ vl ++++ti+    v +vg +g gk+++   l+r+ e + g i +   ni+++    lr  ++++ q+pvlf+ s+r n+    +     q  de   +a+ ++a   +fv    ++ d    e g  ls gq+q + +aral+ + ++l+ldeat+a+d e+++l+q +i   +   t + iahrl t+m+  +++v+d+  va+ ++  ell++ 
  MMETSP1174-20130828|13544_1    5 YVSQIGASLATLAGLFSSFMGAIGASQRIFEII---DRVPLILNEGgIVPDT--DSSRICFSSVCFAYPTRLDVpVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYgcLargdKQVPDEGAVTAVaKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRS 291 
                   666777777777777777777777777776654...3567666654145554..6789***************989******************************************************************************8531121111467788766665379********************************************************************999999999*******************************99765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   2.2e-37   1.6e-35      16     236 ..      75     293 ..      62     301 .. 0.88

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 2.2e-37
    TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdev........kdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpke 236
                  +l++ +l i++n+ +al+G sG Gk+t++  l rl + +     +G+++l  ++i +  l+   lr ++ +v q+p  f+ si +n+ yg  ++g  dk++ de + +++ k a  d+          + + + +++LsGGq+qr++iaral v+P vlLlDe tsaLD+++ + ++  i++     t vi+ h ++  +  +dk++++ + ++ ++g+ e++++++++
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPT-----SGTITLGSHNISH--LNPSYLRGTMALVAQEPVLFATSIRENICYGCLARG--DKQVPDEGAVTAVAKIANADQFvmnftegyDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQK 293
                  899*********************************998.....9**********76..6999***************************99998..77777777777777777666541111111144567899*************************************************99**********97765.8********************998876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.5   4.1e-34   2.9e-32      19     225 ..      75     290 ..      69     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 4.1e-34
    TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.kr.dyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv...........glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225
                  +l++ +l+++++  v+l+G sG Gktt++ ++  L ++++G+i+lg ++i++l p+  r    +v q  +Lf    ++eni yG  +++ k+   +  v+ + ++            g ++       +lsGGq+qr+a+aral++ P +LLLDe  saLDa   + ++  + k    +g tt++++h     +  aD+ivv+++ ++   gt ee+ ++
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSyLRgTMALVAQEPVLFA-TSIRENICYGCLARGDKQVPDEGAVTAVAKIAnadqfvmnfteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVM-NADKIVVIDNHTVADSGTHEELLSR 290
                  7999************************************************988733526899********7.58*********99997765444444444443300000021111222333334568*********************************986666666664..679*********988766.59******************99765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   4.9e-33   3.5e-31      10     220 ..      77     290 ..      71     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 4.9e-33
    TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvd....l.eeyedryPd.......elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrn 220
                  ++ dl i+e   + ++G sG Gk+t++ ll rl ePt+G i +  ++i ++++  l    r  +a+v q+  lf   +i +ni +g  l++ d+q   e a  a+ ++     +  ++++ y         +lsGG++qr+ +aral ++P +ll+dea sald    + +q  + k  + + +t v i+h l   +  +d+iv++ +  +   Gt +e+l  
  MMETSP1174-20130828|13544_1  77 DNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYL----RGTMALVAQEPVLFA-TSIRENICYGC-LARGDKQVPDEGAVTAVAKIAnadqFvMNFTEGYDTmvgergvRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSR 290
                  6889****************************************************....999********9997.68********7.788899988888888776553111212455555543333333379********************************999999999886..789***********99886.9*******************9975 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.1   4.9e-33   3.5e-31       9     229 ..      58     289 ..      52     324 .. 0.78

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 4.9e-33
    TIGR03258   9 vvleslrvaygarv...vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp.ykrn.lallvqnyalfphlkveenvafGlrarkqsk......aliaervadalklvq.ls....daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
                  + + s+  ay +r    vld++ l+i     +al+G sG Gktt++ ++  + ++  G++ ++ ++++hl p y r+ +al+ q+  lf    + en+ +G  ar   +           ++a+a + v  ++     +  +   +lsGGq+qr+a+aral+v+p+vlllde  salda+  + v+  +    + +   t ++++h r  +++ adki ++ + ++++ G+ ++l  
  MMETSP1174-20130828|13544_1  58 ICFSSVCFAYPTRLdvpVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPsYLRGtMALVAQEPVLFA-TSIRENICYGCLARGDKQvpdegaVTAVAKIANADQFVMnFTegydTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAID---KAMIGRTTVIIAH-RLSTVMNADKIVVIDNHTVADSGTHEELLS 289
                  556666667776644449***************************************************96548786489999**99997.589*******988754441111112223456666555531221110223345679*************************************9998765...5667778888888.5677889*****************999875 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.2   2.3e-31   1.7e-29      15     224 ..      74     292 ..      57     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.3e-31
    TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhG...lsraeaeerieealar....lglaeraeekv....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                   +ld+ +lt+++ + vaL+G  G Gk+t++sll rLye ++g+i++  +++++ + + l+ ++ +v q++ l    s+++n+ y    +G   ++ + a + ++++ +     ++++e  ++ v     +L+GG+++r+ iaral+ +P++LLlDeat  LD+es + ++ ++ + +  +  +v+   h +  v ++d++vv+++  v+ +G+ +el ++ +
  MMETSP1174-20130828|13544_1  74 PVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRgTMALVAQEPVL-FATSIRENICYGCLARGdkqVPDEGAVTAVAKIANAdqfvMNFTEGYDTMVgergVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRT-TVI-IAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQ 292
                  689**************************************************9999998358888888877.678********9888774446666555555544332111144555555544111167*************************************99999999885444.444.479999***********************9976543 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.1   3.2e-31   2.3e-29      13     220 ..      73     289 ..      69     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 3.2e-31
    TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvq....leklgdryps.......qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                  + +ld+ dl++++   val+G sG Gk+t++ ++  l +p+sG+i+l  +++++++    +  + +v q+  lf   ++r+ni +G   r  ++      v+ + ++ +    + ++++ y +       +lsGGq+qr+a+aral v+p+vlllde  +alda+  + ++  + k    +  ttv+++h  +  ++ ad+ivv+++  + + g+ ee+  
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSylRGTMALVAQEPVLFA-TSIRENICYGCLARGDKQVPDEGAVTAVAKIANadqfVMNFTEGYDTmvgergvRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLS 289
                  5689**************************************************98752256799*********7.58********999844444444444443333330001123344443222222228**********************************98888888776..56999*********99997.9***************9999865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.2   1.1e-30   7.6e-29       1     191 [.      91     290 ..      91     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 98.6 bits;  conditional E-value: 1.1e-30
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtev.paekr.svnvvfqsyaLfPhmtveenvafgLkmrkvpkaeik......ervkeaLelv.ql....eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                  l+G+sG Gktt++ ll  l e+ sG i l+ +++++  p+++r ++ +v q+  Lf   ++ en+ +g   r+ ++   +      +++ +a + v ++    +++   +  +lsGGq+qr+a+ara++ +P++LLlDe+ saLD +  + +q  + +    +G t+v+++h  +  +  +d+i+v+ +  +a  g+ ee+ + 
  MMETSP1174-20130828|13544_1  91 LVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLnPSYLRgTMALVAQEPVLFA-TSIRENICYGCLARGDKQVPDEgavtavAKIANADQFVmNFtegyDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVM-NADKIVVIDNHTVADSGTHEELLSR 290
                  78*********************************972567783578999*****97.69********877765444333000001344444444422311113456678899****************************************99975..579*********988776.59******************99765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   1.1   2.6e-29   1.8e-27      24     255 ..      73     308 ..      59     314 .. 0.79

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 2.6e-29
    TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi.savnprksvr.eiigePlrhltsldeserkariae....llelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhp....agrllqeavlp 255
                   +vldn +l+++e  tval+G+sG Gk+t+  lll l +P++G+++   +++++l+++    +r ++ lv q+ +  a   r+ +    ++   +++ +  +    a+ia+    +++  e  + ++  +  +lsGGq qri+iaral v+P++++ldea s ld      +   +   k+  G + ++i+h l+ v + a++++v+d+  + +  +  ells ++     + r++q+++ p
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSY---LRGTMALVAQEPVlFATSIRENICyGCLARGDKQVPDEGAVTAVAKIANadqfVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAID--KAMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQKyqdlVKRQMQSSLTP 308
                  68******************************************************986...6778999999864245555655541355655566655555555555554111245556667778889999*********************************988776666655..7899*************986.89*******999998888888876544112255666666655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   4.1e-29   2.9e-27      14     233 ..      72     287 ..      58     294 .. 0.84

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 4.1e-29
    TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgak.stlksllglfseedkekAlelLerv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                  +  +l+n +l+i++   va++G+sG Gk+t++  + rl e++sg+i+l  +++++l+ + l   r  ++++ qe  l + +++ en+  g l++  +++     +   ++ ++A + + ++  g + +  +r  +LsGGq+qR+aiaRal+ +p+++l DE +++LD +s + v  ++ +     g t+++  H+++ +++ ad+iv + + ++   g+ +el
  MMETSP1174-20130828|13544_1  72 DVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYL---RGTMALVAQEPVLFA-TSIRENICYGCLARGdKQVPDEGAVTAVAKIANADQFVMNFteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAM--IGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEEL 287
                  45689*************************************************9987765...678*******87765.6899********98614555555555566667777777665447899999********************************************99998755..577888888***99986.99***9999888766666665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   1.5e-28     1e-26       2     203 ..      58     267 ..      57     277 .. 0.80

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 1.5e-28
    TIGR02673   2 ielekvskeyaa..gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlel.......vgledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv 203
                  i+++ v ++y++  +v +L++ +l+i++   + l+G+sG Gktt++ lll   +p++G++++  +++++l+ +    lR  +++v q+   l + ++ en+      rg+k+   +  v++v +        +++++  +++      +lsgG +qR+aiaRa++ +P++ll De t  lD+e ++ +   + ++    ttvi+a h  + v + 
  MMETSP1174-20130828|13544_1  58 ICFSSVCFAYPTrlDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPS---YLRGTMALVAQEPV-LFATSIRENICYGCLARGDKQVPDEGAVTAVAKIanadqfvMNFTEGYDTMvgerGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIA-HRLSTVMNA 267
                  78999*****96225679***************************************************9876...68*********975.56789*********99999988777777776664111222244444444431111568*********************************99999999999888776777766.655555444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.2   5.5e-28   3.9e-26      15     219 ..      75     287 ..      66     298 .. 0.84

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 5.5e-28
    TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.............ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219
                  vl + +l+++++ +va++G+ g Gktt++  l+ l++ +sG+i+l +++i++l+p+   +  +a v q   +f++ +++en+  g  a+ +k               + ++ ++++    ++m   rg  LsGGq+q +aiaRaL+ +P++llLDe t  +     + ++ +i++     + + +++ + l+ +++ ad+++v+++ +v  +g++eel
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSY-LRGTMALVAQEPVLFAT-SIRENICYGCLARGDKqvpdegavtavakIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAM--IGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEEL 287
                  899***************************************************975.6889******9888875.9********988887656665554443211112233344444578899****************************************9999999999754..45566777788998888.9**************999886 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   1.4   3.7e-27   2.6e-25       6     230 ..      73     306 ..      70     325 .. 0.78

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 3.7e-27
    TIGR01188   6 fkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyg...lpkkeaeeraeelle....lvelkeaadkkvkt....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikel 230
                  +  +d+ +l ++e++ ++l+G  G GKtt++++L  l +P+sGt ++  +++ + +p+ +R  +++v q+  +    + ren+       g   +p + a   ++++ +    +++++e  d  v++    +sgG+++r+ +a++l+++P+vl LDE t+ LD+++ + +   i++    g t+++ +h l  + + ad++ +id+ +++  +t eeL +r +k    v+r+   +l
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHlNPSYLRGTMALVAQEPVLFA-TSIRENICYGCLARGdkqVPDEGAVTAVAKIANadqfVMNFTEGYDTMVGErgvrLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI-GRTTVIIAHRLSTV-MNADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKRQMQSSL 306
                  567899**********************************************8669**************98875.47788886433333311144443333333333211112456677777776433338******************************************99876.55556678999988.669********************9988776644444444444 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.6     3e-27   2.1e-25      16     236 ..      79     306 ..      74     318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 3e-27
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee...........rri.seek.vielL.giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskd.ls.llekeeagsv 236
                   dl++  +  +al G+sG Gkt+++ l+  L  p++g i+l  + +      +  +  +  ++ v qe  LF+  s+ren+ YG     +++            +i + ++ v+++  g + ++  +  +LsGG kqR+ai+RAl+ +P++Ll+De  +aLD ++ + +   +++  a +    + ++H l+ v   ad++vv+++  v+  g+ ee+l++++  + l++++ ++s+
  MMETSP1174-20130828|13544_1  79 FDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISH----LNPSYLRGTMALVAQEPVLFA-TSIRENICYGCLAR-GDKqvpdegavtavAKIaNADQfVMNFTeGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQkYQdLVKRQMQSSL 306
                  46788888999******************************9877654....455888999***********8.69********8532.2220000011110011112222122222356788989999***********************************99998887775..567888999*******987.9*******************99876514456777777766 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.2   3.2e-27   2.3e-25       5     183 ..      73     258 ..      69     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 3.2e-27
    TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlse....aeve..rrvrealaavd..isglee...rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                  + vl++ +l++++ +++al+G+ G Gk+t+++ l  l  P+sG+++l+ +++ +   +   lr ++alv q+p   lfa+++ e++++g l  G ++      v+  +++ +a + v    +g++         lsgG+k+r+aia a+ ++p+vlllde t+ ld++ ++ +  +++k     +tv+i+
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSY--LRGTMALVAQEP--VLFATSIRENICYGCLARGDKQvpdeGAVTavAKIANADQFVMnfTEGYDTmvgERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIA 258
                  569*************************************************9987765..6899******99..6******************8752211234411345566555532234444411134457*********************************************98888888776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.1   1.6e-26   1.1e-24      12     205 ..      74     272 ..      67     273 .. 0.78

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 1.6e-26
    TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevle.....k..vglekklkkki....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205
                   +l++++l+i++  +va+vG+sG GK+t++ +l +l ++ sg+++l  ++     s+ + ++lr +++ + q+  L    +++en+  +   +  ++   e +++ v +     +  +++++  ++ +      lsgG+kqR+a+ar+l+ +++++l DE t++LD+++++ v   +++ +  g+t +i+ H  +   +ad+++ 
  MMETSP1174-20130828|13544_1  74 PVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHN----ISHLNPSYLRGTMALVAQEPVLFA-TSIRENICYGCLARGDKQVPDEGAVTAVAKianadQfvMNFTEGYDTMVgergVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK-AMIGRTTVIIAHRLSTVMNADKIVV 272
                  58********************************************9998....35677899***********99885.68*****998776554444333332222221111131133333344444222278*********************************998888777665.56799999999**999999999986 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.2   2.4e-26   1.7e-24      16     208 ..      78     279 ..      69     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.4e-26
    TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapy..erpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqv...........GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                  +fdl++++   va++G sG Gk+t+++l+  + ep+sG+i++  ++  ++ p+  +  ++++ qe  lfa  ++r+ni+ G       +  ++  v++va+             G + ++     +lsGGq+qr+a+ar l+ +  +lllde  sald    + +   + k      +t ++++h+ls ++  a+++vv+++  ++
  MMETSP1174-20130828|13544_1  78 NFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSylRGTMALVAQEPVLFAT-SIRENICYGCLARGDKQVPDEGAVTAVAKIAnadqfvmnfteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI--GRTTVIIAHRLSTVM-NADKIVVIDNHTVA 279
                  6******************************************999999888532456788899*****95.89******9655544455555555555554400000122222444445555568********************************9766655555555443..578999*****9876.589****9998876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.4   2.6e-26   1.9e-24      14     227 ..      73     290 ..      66     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 2.6e-26
    TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelsslad.......rdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                  ++++d+ d+t  + +  +l+G  G Gk+t+++ll  l +p+ G+++l+++++  l+       +alv q+       s+r+ +  G +    +   d  + ++v++ a a+  + ++++            lsGG++qr+ +aral  +P++lllde t  ld ++   + +++ + +  ++tv++a h l+   + +d++vv+d+  v+ +G+ +e+l +
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEP-VLFATSIRENICYGCLARGDKQVPDEGAVTAVAKIANADQFVMNFTEgydtmvgERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIA-HRLSTV-MNADKIVVIDNHTVADSGTHEELLSR 290
                  6899****************************************************9999999******86.567789*****9998877666666666666665555555444444331111111333469***********************************99999998886666666666.999975.679******************99987 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.6     2e-25   1.4e-23      15     218 ..      70     277 ..      61     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 2e-25
    TIGR02211  15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskksk..keakerak.......ellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgk 218
                  +l++ vl++ +l i++  +va+vG+sG Gk+t++ ll  l +ptsG+++l  +++s+l+    ++lr  ++ ++ q   l    ++ en+    l +  ++   e + +a        +++ ++  g +  + ++   lsGG++qr+aiaral+ +P+++l de t+ ld+++ + +   + +     + + ++++h l+ + ++d+ + + + +
  MMETSP1174-20130828|13544_1  70 RLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLN---PSYLRG-TMALVAQEPVL-FATSIRENICYGCLARGDKQvpDEGAVTAVakianadQFVMNFteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI--GRTTVIIAHRLSTVMNADKIVVIDNHT 277
                  57889*********************************************999988876...578996.68999997655.5679*********99765541223322222000001123332222567788899999**********************************99999998887544..455588899999999999999888866 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.2   4.7e-25   3.3e-23       2     203 ..      58     267 ..      57     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 4.7e-25
    TIGR00960   2 ikfeqvskaykgaae.laldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkg..re..ieervsaa.lekv......GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlves 203
                  i f+ v  ay++  + + ldn  + i++   v lvG sG Gk+t++ l+l   +p++G i +  +++++l+    ++lr ++ +v q+  +l   ++ +n+       G k   +e  +  ++++a  ++       G      +  v+lsgG++qr+aiara++ +P +ll de t+ ld e  + +   +++     ttv++a    ++++ 
  MMETSP1174-20130828|13544_1  58 ICFSSVCFAYPTRLDvPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNP---SYLRGTMALVAQEP-VLFATSIRENICYGCLARGDKQvpDEgaVTAVAKIAnADQFvmnfteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNA 267
                  679999999*99865389***************************************************986...69**********86.5667899*****9998888664113311222222221122212222366666677889*********************************998888888888887777788887666666654 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.2   3.1e-25   2.2e-23       1     209 [.      76     293 ..      76     308 .. 0.77

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 3.1e-25
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpd....rmvvfqnysllpwltvrenialav.....davlrdlskserreiveehielvglreaadk....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeilevplerpre 209
                  l++ dl+i++   ++l+g sg gk+t++ l+  l +ptsg+++l  ++i++  p      m +  +  +l  +++reni         ++v  + + +   +i + +  +++++e  d     r  +lsgg kqr+aiaral + p++lllde   alda + + +q  + k +     t+++++h +  +++ +d++v++ n   a+ g   e+ l r ++
  MMETSP1174-20130828|13544_1  76 LDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSylrgTMALVAQEPVLFATSIRENICYGClargdKQVPDEGAVTAVAKIANADQFVMNFTEGYDTmvgeRGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAM--IGRTTVIIAHRLS-TVMNADKIVVIDNHTVADSGTHEEL-LSRSQK 293
                  6899**********************************************988863322476666667777899*****764311121333344444555666676767788888877611115567*********************************99988888877765..45688899**996.6899*********999988865443.455555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   6.4e-08   4.5e-06      13      68 ..      73     128 ..      64     159 .. 0.89
   2 !   55.1   0.1   1.9e-17   1.4e-15     144     240 ..     200     293 ..     165     303 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 6.4e-08
    TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmk 68 
                  + vld+++l++++   val+G sG Gk+t++ +l+ l +   G+i + ++++ h++
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLN 128
                  569********************************************999999986 PP

  == domain 2    score: 55.1 bits;  conditional E-value: 1.9e-17
    TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpke 240
                   ++lsGGqkqr+aiaral ++p+vll+de+tsald e    v   + +       t ++++h++    + ad+++  d+  +++ G  +e++ + ++
  MMETSP1174-20130828|13544_1 200 GVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI--GRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQK 293
                  689**********************************88888888877544..4577899***998876.9*******************9987664 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   1.4   1.3e-24   9.5e-23      20     216 ..      75     275 ..      67     279 .. 0.77

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 1.3e-24
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmal......elkek..lsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmed 216
                  vl + +l+i+++  v l G+sG Gktt+++l+  l +  +G++++ ++++++++      +r ++ ++ q+  l+ +   ++n+  +       ++ ++  ++a ++ a+a++++ +   g +  +  +   lsgGqkqr+aiaral+ +P+++l de t+ald++s + v   + k     g t ++++h    +  ad+iv +++
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNP---SYLRGTMALVAQEPVLFAT-SIRENICYGClargdkQVPDEgaVTAVAKIANADQFVMNFteGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAM--IGRTTVIIAHRLSTVMNADKIVVIDN 275
                  899******************************************9999888765...4678888899888887764.66778866541111112322222344445555555554432256668999999************************************998888777654..567778889988877789**999886 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   1.2   1.9e-23   1.4e-21      18     245 ..      73     306 ..      62     310 .. 0.76

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.9e-23
    TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplel...entpkekikrkvtella....lvglsdkkdsy....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpk..telakkfirstl 245
                  +  ldn +l + + + + ++g+sg gk+t++  +  l +ptsg++ +  +++++l+ + l   r  + ++ q   l++  ++ +n+         ++ p e   + v+++      ++ +++  d+        lsggqkqr+aiaral  +p+vll deatsald  + + +   + +    +g t ++i+h +  v +  d++ vid+  + + gt  e++s+ +   +l k+ ++s+l
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYL---RGTMALVAQEPVLFA-TSIRENICYGCLArgdKQVPDEGAVTAVAKIANadqfVMNFTEGYDTMvgerGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDK--AMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQkyQDLVKRQMQSSL 306
                  6789***************************************************98877...777888888866554.4567777654332010233344333333333221111345555555541111568********************************8776655544432..46899**********9987.7999******************987722478888888776 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   3.3e-23   2.3e-21     434     639 ..      68     292 ..      53     305 .. 0.85

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 3.3e-23
    TIGR01271 434 lslyvtpvlknislklekgqllavagstgsgkssllmmilgelepsegkik...hs..........grisfspqvswimpgtikdniifglsy.......deyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilllhegscyfygtfselqakkp 639
                   + +  pvl n +l +     +a+ g++g gk++++ ++l   ep+ g i    h           g ++  +q + ++  +i++ni +g          de   t+v k  + ++ +  ++e  +t++ge g+ lsggq+ ri++ara+  +  + lld   s ld  +e+ + +  + k +  +t ++++ +l  + +adki+++ + +    gt  el ++  
  MMETSP1174-20130828|13544_1  68 PTRLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITlgsHNishlnpsylrGTMALVAQEPVLFATSIRENICYGCLArgdkqvpDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEH-LVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHEELLSRSQ 292
                  455678*****************************************99853222111222333336677789999*************963223333349999***************************************************************99885.77899*********************************9999**999977655 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.2   5.1e-22   3.6e-20      50     255 ..      85     288 ..      65     295 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 5.1e-22
    TIGR00955  50 sGellAvlGsSGaGKtTLlnalafrsekglkvsgdvll...nGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevlee....lgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                  + + +A++G+SG GKtT ++ l    e  +    +++l   n  +++ + +r   a v q+ +++ t ++re++ +    r ++++  +    +v ++ ++    ++ ++  dt++g  g    lSgG+++R+a+a  l+ +P +L++DE Ts LD+ s + v  ++ + a+ g+t ++  H  s  ++ + dki+++++  v+ +G+ ee++
  MMETSP1174-20130828|13544_1  85 ENTTVALVGTSGGGKTTVMSLLLRLYEPTSG---TITLgshNISHLNPSYLRGTMALVAQEPVLFAT-SIRENICYGCLARGDKQVPDEGAVTAVAKIANAdqfvMNFTEGYDTMVGERGV--RLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAI-DKAMIGRTTVIIAHRLST-VM-NADKIVVIDNHTVADSGTHEELL 288
                  55679***************99876665443...4555111556778899************99987.89****************************98655668999********7774..8*********************************9876655555.558888888888999765.44.56999999999999999988875 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.9e-08   4.2e-06     298     342 ..      74     118 ..      65     149 .. 0.90
   2 !   44.6   0.2   2.3e-14   1.6e-12     168     269 ..     202     300 ..     193     310 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.9e-08
    TIGR03269 298 kavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGeve 342
                    +dn +l+++e+    lvGtsG Gktt+  +l+ + eptsG ++
  MMETSP1174-20130828|13544_1  74 PVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTIT 118
                  5689**************************************875 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 2.3e-14
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevek 269
                   lsGG+kqr+ +ar l  +p +ll de t +ld ++ +lv  a+ +a++ +  +++++   + v++  +dk +++++ ++ + G+ ee++++  +  + v++
  MMETSP1174-20130828|13544_1 202 RLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGR-TTVIIAHRLSTVMN--ADKIVVIDNHTVADSGTHEELLSRSQKYQDLVKR 300
                  59********************************************99976.57888888999997..7*******************99876655555555 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   2.9   8.5e-21     6e-19       2     200 ..      82     288 ..      81     307 .. 0.71

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 8.5e-21
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawd....fpidveqtvlsGragliGllrrpkkadfaavadaler....vklteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvad.gapdqlq 200
                  ++++   ++l+G  G Gktt++  +l l +++ G++ +++++   ++ +  y+     +  +    f  ++++ +  G   + G  + p +   +ava+  +     +++te  d  vGe    lsGGq+qr+ +aral v+p++lllde  + ld  s e+lv+  ++ a  g++ ++ +h l+  +++ d++v+++++ vad g+ ++l 
  MMETSP1174-20130828|13544_1  82 TIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHN--ISHLNPSYLRGTMALVAQepvlFATSIRENICYGCLAR-GDKQVPDEGAVTAVAKIANAdqfvMNFTEGYDTMVGErgvrLSGGQKQRIAIARALMVNPRVLLLDEATSALDAES-EHLVQGAIDKAMIGRTTVIIAHRLSTVMNA-DKIVVIDNHTVADsGTHEELL 288
                  56778899******************************9974..44444555555555544401115556666666664433.4445555555555544332211224789999999*9777779*******************************987.56666667789999999999****998876.566666656666515556554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.8   6.3e-21   4.5e-19       3     219 ..      77     293 ..      75     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 6.3e-21
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkalekls..kq....akelivealeav.gLee.aeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkh 219
                  ++ +l+++++  +alvG sG Gk+++ + +l l +     tsG i+l  +++++l  ++   ++al+ q+P+       +i+e++   + a++  +  ++    a ++i++a + v + +e  ++++ +   +lsGG  qR+ ia al++++ +l+ De t++lD+ ++  v   +++ +   g + ++i+h l+ v + ad+++v+++  + ++gt +el+++ ++
  MMETSP1174-20130828|13544_1  77 DNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYE----PTSGTITLGSHNISHLnpSYLRGTMALVAQEPVLFA---TSIRENICYGCLARGDKQvpDEgavtAVAKIANADQFVmNFTEgYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI--GRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQK 293
                  6889********************99888888877....799********99998887888899*******9654...577888887777766544233310012222333322222344414678888999*******************************************999775..5566789*****9976.9******************99986553 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.5e-20     1e-18      12     230 ..      72     285 ..      69     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.5e-20
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                  d ++L++++l++++ +++a++G+ G Gk t+++ l     ye tsG+i+l  +++++l++    r  + l  q p+  +  s++e +   + a+ +++  +e  +++ +k  ++   +++++e + +     G   sGG k+r  i + ++++P++ +LDe+ s lD ++ ++v   ++k     ++++ii+h  rl   ++ d++ v+ + +++ sG  e
  MMETSP1174-20130828|13544_1  72 DVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLR--LYEPTSGTITLGSHNISHLNPSY-LRGTMALVAQEPVLFAT-SIRENICYGCLARGDKQVPDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGvrLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIG-RTTVIIAH--RLSTVMNADKIVVIDNHTVADSGTHE 285
                  5689*****************************9985..6899****************985.577799999***97765.5555555566666655655556777777888888888888886655555555337*******************************************98765.66778888..89999******************865 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-08   8.2e-07      20      67 ..      72     119 ..      65     141 .. 0.91
   2 !   36.7   0.1     9e-12   6.4e-10     150     207 ..     203     259 ..     198     275 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.2e-08
    TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                   +pvl++ +l++++   val G+sG Gk t++  l + Y p sg+i++
  MMETSP1174-20130828|13544_1  72 DVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITL 119
                  689*****************************************9976 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 9e-12
    TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifh 207
                   sGG kqR+ iaral+++  +LLLde t++Lda   + v   i++a   ++++i i h
  MMETSP1174-20130828|13544_1 203 LSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVI-IAH 259
                  69***************88899*****************999999988777766.555 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.3   1.6e-19   1.1e-17      15     203 ..      75     279 ..      69     301 .. 0.76

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 1.6e-19
    TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlkkiGsliesPalyenltarenlkvrtlllg...lpe.srieevlkivdlen...........tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                  v++n +l++++n+  +l+G  G Gk+t++ ll  l ++tsG i+l +++++    + l+   +l+ + ++    + ren+   +l +g   +p+   +  v ki + ++           +   +   +s G kqr+ ia al+ +P++l+lde t  ld    + ++  i      G t ++ +h ls v   ad+i +i + ++ 
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHlnpSYLRGTMALVAQEPVLFATSIRENICYGCLARGdkqVPDeGAVTAVAKIANADQfvmnftegydtMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMI-GRTTVIIAHRLSTVM-NADKIVVIDNHTVA 279
                  899******************************************99987762226799999999998888899******999998762224432455666555443321111111111023355667999*****************************9877777777766554.555566689***995.69******998765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   1.8e-19   1.3e-17      13     184 ..      73     259 ..      67     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 1.8e-19
    TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq..........seqktveeale.kvgLsgledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                    +l + ++++    +++++G  G GKtt++ +l  L +p+sG+++l ++++++ ++++ + ++ l  ++ +  + s++En+ + +   +          ++  ++ +a +  ++ ++  d++v      Ls Gqk+R+a+ar l+ + ++ +LDE t alD+e+ +l++ ++++ +    +v++a 
  MMETSP1174-20130828|13544_1  73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLARGdkqvpdegavTAVAKIANADQfVMNFTEGYDTMVGergvRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAH 259
                  67899999***************************************************9999999999999999********98877762333333222111123333221256666667776533336******************************************998776666666654 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1   4.7e-20   3.3e-18     943    1144 ..      73     284 ..      55     322 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 4.7e-20
    TIGR01257  943 rpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsw..eeaqlemea.........mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtp 1144
                    p +d +++t++en   a++g  g gktt +s+l  l  ptsgt+ +g ++i   n   +r ++ ++ q  +lf   ++ e i + +  +g  +  +e  +   a         m    g      e    lsgg ++++++a a++ + +v++lde ts +d  s + +   + k   grt ++ +h +    +  d+i +i +  +  sgt 
  MMETSP1174-20130828|13544_1   73 VPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNIShLNPSYLRGTMALVAQEPVLFA-TSIRENICYGCLARGDKQvpDEGAVTAVAkianadqfvMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLST-VMNADKIVVIDNHTVADSGTH 284 
                   5899************************************************7257889**************97.5789999988777776543366555444411111111133345777778888999********************************************************99975.5889*******9999999986 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.2   2.4e-19   1.7e-17      18     229 ..      76     287 ..      72     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.4e-19
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelal..kadksvlallfarlskeekerieevlelig.LeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                  l++++l+++e+   +++G  G Gktt++ ++    +p++G++++ ++++++l+ +   r  ++   q+p +f   +++en+   +  + dk+v +  ++++ ++ ++  + v++ ++  ++ + ++   Ls Gqkq++ i+  l+ +p++lllDe ++ + +e ++ +   + +    r+ v++ h ++ v +  +k+ v+ + +v   G+ +e+
  MMETSP1174-20130828|13544_1  76 LDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPS-YLRGTMALVAQEPVLFA-TSIRENICYGClaRGDKQVPDEGAVTAVAKIANADQFVMNFTEgYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMNA-DKIVVIDNHTVADSGTHEEL 287
                  8999*********************************************998765.56777888999999986.69****9865422667888877777777777777777777765156677888899*******************************99999999999999999999999*******9885.56778888888888887765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   1.3e+02     263     290 ..      22      50 ..      16      71 .. 0.76
   2 !   56.5   0.2   3.1e-18   2.2e-16     777     965 ..      74     264 ..      52     274 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
    TIGR00956 263 alvaiyqasqdayelFdkv.vvlyeGkqi 290
                  +++ +  asq ++e+ d+v ++l+eG ++
  MMETSP1174-20130828|13544_1  22 SFMGAIGASQRIFEIIDRVpLILNEGGIV 50 
                  68888999***********5568888776 PP

  == domain 2    score: 56.5 bits;  conditional E-value: 3.1e-18
    TIGR00956 777 vlLdevdGwvkPGkltALmGasGAGkttLlnvLae..RvttGvitegdrlvngrkldssFqRsi.GYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevik....llelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsai 965
                   +Ld+ d  ++  +  AL+G+sG Gktt++  L      t G it g    n  +l+ s+ R +   v q+ +  + + +re + +    R  k+v+++     v ++ +    ++++++  d +vG+ G  L+  q++r++i+  L+ +P  +l lDe ts LD+ +   +   + k a  G++ +   H  s +
  MMETSP1174-20130828|13544_1  74 PVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRlyEPTSGTITLGS--HNISHLNPSYLRGTmALVAQEPVLFA-TSIRENICYGCLARGDKQVPDEGAVTAVAKIANadqfVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNP-RVLLLDEATSALDAESEHLVQGAIDK-AMIGRTTVIIAHRLSTV 264
                  578999999999999***************99875223599****776..59999*****9976267777777665.569****************************8755668999999******************************.6778***********99988877776.66888888888887765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.5e-07   3.9e-05     337     383 ..      75     121 ..      56     131 .. 0.90
   2 !   34.7   0.0   2.4e-11   1.7e-09     161     216 ..     202     259 ..     192     311 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.5e-07
    TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGe 383
                  ++d++++++ +++ v ++G+ G Gk+t++ l+    +p sG++++G+
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGS 121
                  789******************************************96 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 2.4e-11
    TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke.ykG.tvvavth 216
                  +lsGG+k+r+a++r l+ +P +lllde t  ldaes + ++  + +   G t v+++h
  MMETSP1174-20130828|13544_1 202 RLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKaMIGrTTVIIAH 259
                  69**********************************9998887765234425555666 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.6     1e-16   7.1e-15      19     210 ..      75     275 ..      58     292 .. 0.71

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1e-16
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstre.ieevipsllefar...........leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvlea 210
                  v++++ +ti +     l+g  g gk+t+  l+l l  p  g+it+ ++++   +    r  + +v+q   l    ++ren+  +g   + + +   e ++ ++ ++a             ++    r  +lsgg k+r+++aral+ +p++l+lde t+ ld  + hl+   +   +  g+t ++ +h +       d+++v+++
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHlNPSYLRGTMALVAQEPVLF-ATSIRENI-CYGCLARGDKQVpDEGAVTAVAKIANadqfvmnftegYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAM-IGRTTVIIAHRLSTVM-NADKIVVIDN 275
                  789999**************************************8766654414456799999999987774.56899996.577665543332123344443333331111101000234445556678***************************************99987655.4666666667655432.3556666554 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.2   5.6e-17     4e-15      13     248 ..      72     309 ..      69     316 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 5.6e-17
    TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdte.rkGiviihqeltlvkelsvleniflG......neitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvat..kdaealseddiitmmvGrelts.lypk 248
                  +v  ldn dl+++    v+l G  G Gk+t+m +l  +y     +G i+   +++    ++ +  r  ++++ qe +l    s+ eni  G      +++  +G++++ +++ +  + +++  +  ++ v      l +Gq+q + ia+al  + r+l+lde +++l  +e e l++   d    g + v i+h+l  v   +d+i vi + + va   ++ e ls  +    +v r+++s l pk
  MMETSP1174-20130828|13544_1  72 DVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEP--TSGTITLGSHNISH--LNPSYlRGTMALVAQEPVLFA-TSIRENICYGclargdKQVPDEGAVTAVAKIANADQFVMNFTEGYDTMVGERGVRLSGGQKQRIAIARALMVNPRVLLLDEATSALD-AESEHLVQGAIDKAMIGRTTVIIAHRLSTVMN-ADKIVVIDN-HTVADsgTHEELLSRSQKYQDLVKRQMQSsLTPK 309
                  6889**********************************975..47999998888754..4444304558999***99986.69*****987444443456666766655555544444444444333444444667889***************************96.6888999999999999*************986.8***99954.5555411445668888999999999986425565 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   1.0   3.2e-14   2.3e-12      17     225 ..      75     293 ..      58     309 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.2e-14
    TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaal...yklkgrklkkrveelie...lvGlkaeqhkki.g....alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaekk 225
                  +ld+  +++++   v ++G  G Gk+t+m +l    +++sG++++  +++ + +    +    l   +P+     +re + + +      ++ ++     v+++ +    v   +e +  + g    +ls G +qr+ +a+al+ +P+vl+lde t+ ld +    ++  i +    +t ++ +h +  v    d++++i++  +  + + eel +  +k
  MMETSP1174-20130828|13544_1  75 VLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLArgdKQVPDEGAVTAVAKIANadqFVMNFTEGYDTMvGergvRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQK 293
                  789999999***************************************99875555555555677789999999****98886554111456666655555555441113444567776542322237*********************************9988899999888778888888888888865.699999999888777888887655543 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   1.8e-14   1.3e-12      41     257 ..      77     292 ..      70     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.8e-14
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqle.......lvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPa 257
                  ++  l+++e   + l+G sG Gk++++  + +l   + G +++     + ++ +++ + lr     ++++v q+  l+   +++en+++G   +G  +      v++  +       +++++e  d+ vge    lsGG +qr+ +ara+ ++  +ll+de  sald    + +q  +   ++ + +t v ++h l   +   ++i ++++  +   gt ee++ + +
  MMETSP1174-20130828|13544_1  77 DNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLG----SHNISHLNPSYLRG----TMALVAQEPVLF-ATSIRENICYGCLARGDKQVPDEGAVTAVAKianadqfVMNFTEGYDTMVGErgvrLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAID--KAMIGRTTVIIAHRLSTVMN-ADKIVVIDNHTVADSGTHEELLSRSQ 292
                  6789***********************************99875....45678888888874....7899*9998776.589********9999966554444444433300011115577777888888777779*******************************998877777653..57899**********99998.58999*************99987654 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   3.9e-13   2.7e-11     357     545 ..      76     276 ..      68     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 3.9e-13
    TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd........ekkqasldqattylsrleledkvkv.edlnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladG 545
                  l   dl+i++   v +vG  G Gk+t++ lll ly p +G + l  + +s       r  ++ v  +  lf   +  +         +kq   + a t + ++  +d+  +    +y t        ls Gq++r+a+  a + +  vlllde ++  d     +    +  d    G+t ++i+h       ad+++ + + 
  MMETSP1174-20130828|13544_1  76 LDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHNISHLNPSYLRGTMALVAQEPVLFATSIRENicygclarGDKQVPDEGAVTAVAKIANADQFVMnFTEGYDTMvgergVRLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAI--DKAMIGRTTVIIAHRLSTVMNADKIVVIDNH 276
                  56689**********************************************9999999999999999999998887542222222135677777888999988888775441567888752222257********************************99998877665..88889*********99999999999977654 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.3e-13   1.6e-11     444     641 ..      48     262 ..      29     276 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.3e-13
    TIGR00954 444 gkvea.qdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkL.ed.llereggwdavqdWkdv.LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshrks 641
                  g+v + + ++i f  +  + P   +  ++++  + +++ + + ++G  G GK  ++ +l  l+ P+ g           l     +g +  v q P +   ++R+ i Y        ++ + d+  +  + ++   ++ +++   g+d++   + v LsgG+kqRia+AR +   P+  +LDE+tsA+  + E  +  ++ ++ i  t + ++hr s
  MMETSP1174-20130828|13544_1  48 GIVPDtDSSRICFSSVCFAYPtrLDVPVLDNFDLTIHENTTVALVGTSGGGKTTVMSLLLRLYePTSGtitlgshnisHLNPSYLRGTMALVAQEPVLFATSIRENICYGCLA--RGDKQVPDEGAVTAVAKIANaDQfVMNFTEGYDTMVGERGVrLSGGQKQRIAIARALMVNPRVLLLDEATSALDAESEHLVQGAIDKAMIgrTTVIIAHRLS 262
                  444441446888999999999432344788999999**************************96777788887766532223334789*********************7654..5677788877776666665414425666789*9987766655**********************************99998888887776224444566655 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   1.4   2.5e-11   1.8e-09      28     234 ..      87     297 ..      77     302 .. 0.69

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.5e-11
    TIGR02323  28 evlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGani.gerlla.vg.arhyGkiraaakwlekv.eidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvre..lglaviivthlavarllaqrllvmkqGrvvesGlt.rvlpkhpytqll 234
                    +++vG sG Gk+t+++ l     +++G++t  s +    + +l+ +     lr    lv q+p      +r ++  G+   g++ +   g +    ki++a +++ +  e   + +  +   +sGG +qr+ iar+l+ +pr++++ e t  l +    l+  +g + +  +g +++i++h   + + a++++v+ +  v +sG   ++l +    q l
  MMETSP1174-20130828|13544_1  87 TTVALVGTSGGGKTTVMSLLLRLYEPTSGTITLGSHN----ISHLNPS----YLRGTMALVAQEPVlfatSIRENICYGCLArGDKQVPdEGaVTAVAKIANADQFVMNFtEGYDTMVgeRGVRLSGGQKQRIAIARALMVNPRVLLLdEATSALDAESEHLV--QGAIDKamIGRTTVIIAHRLSTVMNADKIVVIDNHTVADSGTHeELLSRSQKYQDL 297
                  56899***************9999*******997655....7777655....45567899***9963223455555555432133333212213345677777776555414444445767889**********************99788888765554443..44444301566889999955556899***************986777665544444 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.16        11      12     649 ..      76     102 ..      72     113 .. 0.61
   2 !   23.5   0.0   4.2e-08     3e-06     801     902 ..     174     272 ..     139     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.16
    TIGR00630  12 LknidvelprdklvvitGlsGsGkssLafdtiyaeGqrrYveslsayarqfLgkldkPdvdsieGLsPaisidqkttsknprstvGtvteiydYlrllfarvGkaycpecgekiekqsaeqivdeilelpegkrvillaPvvrerkgefkklleklkkqGfarvrvdgevveleeelklekqkkhtidvvidrlkvkeeerkrlaesvetalklseGlleveledeeesakkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldpekivdeeelsleeaaivalkksassyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleeeekkiaeevlkeikerlkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstL 649
                  L n d+++ +++ v + G+sG Gk                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    t+
  MMETSP1174-20130828|13544_1  76 LDNFDLTIHENTTVALVGTSGGGKT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TV 102
                  4455555555555555555555555...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................44 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 4.2e-08
    TIGR00630 801 avpkisrklellvdvGLgY.iklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiid 902
                  av+ki++  +++++   gY   +G+    LsGG  qr+ +a+ L  +     + +lDe t  L  +  ++L++     +  G t v+i h l  + +aD i+ 
  MMETSP1174-20130828|13544_1 174 AVAKIANADQFVMNFTEGYdTMVGERGVRLSGGQKQRIAIARALMVN---PRVLLLDEATSALDAES-EHLVQGAIDKAMIGRTTVIIAHRLSTVMNADKIVV 272
                  6777888888888888888445799******************9864...56889********9876.7777766666778******************9985 PP

>> TIGR02746  TraC-F-type: type-IV secretion system protein TraC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00069     0.049     415     456 ..      70     112 ..      34     119 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00069
    TIGR02746 415 RgqlsafdiFdsdl.tNyNiavvgasGaGKSflaqelivsvls 456
                  R  + ++d Fd  + +N  +a+vg+sG+GK+ ++  l + +  
  MMETSP1174-20130828|13544_1  70 RLDVPVLDNFDLTIhENTTVALVGTSGGGKTTVMSLLLRLYEP 112
                  667789999**99889*****************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      244  (0.0594832); expected 82.0 (0.02)
Passed Vit filter:                        93  (0.0226719); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.22u 0.19s 00:00:01.41 Elapsed: 00:00:01.23
# Mc/sec: 355.19
//
Query:       MMETSP1174-20130828|13548_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 564.62
//
Query:       MMETSP1174-20130828|13549_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 1265.16
//
Query:       MMETSP1174-20130828|13556_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 423.14
//
Query:       MMETSP1174-20130828|13552_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.6   0.0     0.0092   13.4   0.0    1.6  1  TIGR00639 PurN: phosphoribosylglycinamide formyltransferase


Domain annotation for each model (and alignments):
>> TIGR00639  PurN: phosphoribosylglycinamide formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.2e-06    0.0092     122     170 ..     131     180 ..     119     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-06
    TIGR00639 122 eqAleagvkeaGctVHyvdeevDtG.piivqakvpilpedteetleqRik 170
                  e+   +g    Gc  Hyv++ +D+G + +v +++++++e+    l++  k
  MMETSP1174-20130828|13552_1 131 EDSETNGMVRMGCGEHYVNNAIDKGvKAVVNKHIELMEEEAGRALDNEEK 180
                  55556777789**************5579999*******99887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 1493.29
//
Query:       MMETSP1174-20130828|13562_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 168.95
//
Query:       MMETSP1174-20130828|13563_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 538.11
//
Query:       MMETSP1174-20130828|13566_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 451.22
//
Query:       MMETSP1174-20130828|13567_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 255.73
//
Query:       MMETSP1174-20130828|13561_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.81
# Mc/sec: 1235.16
//
Query:       MMETSP1174-20130828|13568_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 335.63
//
Query:       MMETSP1174-20130828|13565_1  [L=1112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.56
# Mc/sec: 2574.95
//
Query:       MMETSP1174-20130828|13569_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 187.34
//
Query:       MMETSP1174-20130828|13573_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0009   16.9   0.0    0.00094   16.8   0.0    1.0  1  TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family


Domain annotation for each model (and alignments):
>> TIGR01033  TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-07   0.00094     184     231 ..       2      51 .]       1      51 [] 0.90

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.3e-07
    TIGR01033 184 keaLekkglkieeaeiklipe.ttvelde.eqaekllklidalEdldDvq 231
                   eaL +kg++ +  ++ ++p+   v++   +q ++ +++++alEd++Dvq
  MMETSP1174-20130828|13573_1   2 SEALDTKGFPPHLVDLIWQPKgDLVDVMGgDQETAFVAFLEALEDNEDVQ 51 
                  58999***************9457999887999****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|13572_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 887.26
//
Query:       MMETSP1174-20130828|13576_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.71
# Mc/sec: 470.33
//
Query:       MMETSP1174-20130828|13579_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 334.10
//
Query:       MMETSP1174-20130828|13578_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   37.8   0.0      4e-10   37.3   0.0    1.3  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    6.5e-05   20.1   0.0    8.7e-05   19.7   0.0    1.2  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.9e-13     4e-10     213     248 ..     135     170 ..      97     179 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.9e-13
    TIGR00005 213 lvelkllTGRtHQiRVHlqylghplagDplYgnksv 248
                   +e++l+TGRtHQiR  l++ g+p+ gD+lY +k +
  MMETSP1174-20130828|13578_1 135 AIEVSLETGRTHQIRGQLASSGFPIFGDRLYDDKYF 170
                  689****************************99877 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.2e-08   8.7e-05     140     167 ..     140     167 ..     104     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.2e-08
    TIGR01621 140 phtGkthqlrvalkslGsailGdslygk 167
                   +tG+thq+r  l s G +i Gd ly+ 
  MMETSP1174-20130828|13578_1 140 LETGRTHQIRGQLASSGFPIFGDRLYDD 167
                  57************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|13574_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.24s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1353.83
//
Query:       MMETSP1174-20130828|13582_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.66
# Mc/sec: 159.99
//
Query:       MMETSP1174-20130828|13588_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00089   16.3   0.1     0.0013   15.8   0.1    1.4  1  TIGR00750 lao: LAO/AO transport system ATPase


Domain annotation for each model (and alignments):
>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.1e-07    0.0013      33      81 ..       4      52 ..       1      91 [. 0.92

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.1e-07
    TIGR00750 33 rahvvGltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsl 81
                   h v ltG P  Gks l++ l+ +l+ rG  v      P+  ++GG +
  MMETSP1174-20130828|13588_1  4 TVHTVVLTGGPCGGKSSLLSLLTDKLKGRGVDVYCCPEVPTILISGGCV 52
                 569999***************************9999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 849.47
//
Query:       MMETSP1174-20130828|13591_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00045   15.9  29.2    0.00058   15.5  20.2    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.062   11.1   2.6       0.38    8.5   0.2    2.7  2  TIGR03166 alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  20.2   2.8e-07   0.00058     242     509 ..      54     317 ..      39     364 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.8e-07
    TIGR02168 242 eeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglseg 509
                  e+++e++ ++++   + +a+ ++ +  l+ l++++++l e+l e+++     k+++++l  ei ++   +++leke+++l  ++e++ s ++ + + l++l    e+lk + ++++a+ +++  +l+++++++   ++   +  +e++e+  ++ +   +l+ l ae++ + +++ r  +++ ++ ++l + e ++ el ++++ + +e ++  e+ ++l e ++ +++e++ +++  +++ e +++++++ + l + +   +g +e+
  MMETSP1174-20130828|13591_1  54 EATREAIGSQNS--GAVTAKSAANQRHLAALEKKVNKLTERLVEITSSQALGKERLATLHGEISEQTTFKDRLEKEIKKLA-EVEQQHSAQKADLKMLKNLVMLNEQLKSQEAAFKANCKRQLTNLKAMKAKVLMDDDPEAARLKEIQEMHTKVIAKYDRLRALAAEKNLAVASNMRIIDDVPTR-TELIQYERRFVELYQQVDMKLAENKKYFETYNTLDESYKIMQKEVTLINSITDNFDEAMRSKSSKDQFLTQFKGIIQGVEES 317
                  344444433333..355677788899999*************************************************999.4555555555666666666667788888888888888888888999999988888888888899999999999999999999999999999999999999888.67888************************************************************99999888877776644 PP

>> TIGR03166  alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00019      0.38      43     109 ..      64     130 ..      54     140 .. 0.85
   2 ?    1.3   0.0     0.033        67      28     108 ..     272     351 ..     262     356 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00019
    TIGR03166  43 vpgiliyetedggesyvAvdeGiLvkkgaevevsvreAvlgeeLeeLeevvreefleldeeerkvrs 109
                   +g ++ + ++++ + +A+++ +   +++ ve++  +A   e L++L+  + e+ +  d  e+++++
  MMETSP1174-20130828|13591_1  64 NSGAVTAKSAANQRHLAALEKKVNKLTERLVEITSSQALGKERLATLHGEISEQTTFKDRLEKEIKK 130
                  667788899999***********9999**********************999998888877777764 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.033
    TIGR03166  28 sfgllprrvDlvaalvpgil.iyetedggesyvAvdeGiLvkkgaevevsvreAvlgeeLeeLeevvreefleldeeerkvr 108
                  s+ ++++ v l+ +++       + +++++++    +Gi+   ++   v  r+   ++ L +L ++v ++ + +de++r  +
  MMETSP1174-20130828|13591_1 272 SYKIMQKEVTLINSITDNFDeAMRSKSSKDQFLTQFKGIIQGVEE-SLVRQRSIFDAKTL-RLDTLVSTHQSLVDEQRRYFK 351
                  555666666666666555531345566677777777777643333.34566666666665.699999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       504  (0.122867); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.61
# Mc/sec: 804.92
//
Query:       MMETSP1174-20130828|13592_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1005.45
//
Query:       MMETSP1174-20130828|13594_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.7   0.0      0.078    9.5   0.0    1.8  2  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme


Domain annotation for each model (and alignments):
>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.019        78     160     215 ..      12      67 ..       5      73 .. 0.79
   2 ?    9.5   0.0   1.9e-05     0.078     330     397 ..     133     203 ..     123     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.019
    TIGR01415 160 kllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealeeedakys 215
                  kll  +y+  v+ s s+  e  ++++k+++ +     l  ++ +e+ +++e++ y 
  MMETSP1174-20130828|13594_1  12 KLLKFAYDVVVLNSESQVDEPTKEIIKKHSMTVPLCCLERANLLEYKISQEKKSYE 67 
                  55566788889999999999999999999888777788888888888888888775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 1.9e-05
    TIGR01415 330 hgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPa..Pesahaiavai.deakkareegkekvi 397
                  hg   ++  l  +G+v+   +  ee ++   ++++ eG + a   e + ai+    +eak+a +eg+ k  
  MMETSP1174-20130828|13594_1 133 HGNFINVNSLQDQGMVDKLKIAEEELINLKAKVTELEGTLCAvrGEFSEAISYYNeREAKRAGKEGEIKSA 203
                  778888999*******************************9944588999997651678888888876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|13593_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1280.29
//
Query:       MMETSP1174-20130828|13595_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1251.90
//
Query:       MMETSP1174-20130828|13598_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.48
# Mc/sec: 1707.61
//
Query:       MMETSP1174-20130828|13597_1  [L=1190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.17s 00:00:00.85 Elapsed: 00:00:00.81
# Mc/sec: 1939.10
//
Query:       MMETSP1174-20130828|13599_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.64
# Mc/sec: 736.25
//
Query:       MMETSP1174-20130828|13600_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 883.93
//
Query:       MMETSP1174-20130828|13603_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 891.82
//
Query:       MMETSP1174-20130828|13601_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 1712.19
//
Query:       MMETSP1174-20130828|13604_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-15   52.7   0.3    8.9e-15   52.7   0.2    1.8  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.9e-09   32.9   0.4    4.9e-09   32.9   0.3    2.1  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
        3.1    3.8  11.3        3.8    3.5   7.8    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   2.3       1.1   1.5e+03      13      69 ..     108     162 ..      99     233 .. 0.48
   2 !   52.7   0.2   6.5e-18   8.9e-15       2      76 ..     256     330 ..     255     363 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.1
    TIGR02349  13 seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghag 69 
                  s+ee   A rk a   H  r +  +e e+k k  ++  ++L+  +  ++ ++  +++
  MMETSP1174-20130828|13604_1 108 SAEEEEIAARK-AEAEHAARAA-TEEKEKKSKSSKRRQNILNMYRTESRAERQKRKR 162
                  44444444444.3344544444.4555666666666666655333222222222222 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 6.5e-18
    TIGR02349   2 YYeiLgvskdAs.eeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghag..leggagg 76 
                  YY+iL v+++ s   eik+AYr+la + HPD+n   k a + fk  ++Ay+ L+ +  r++YD++  ++  ++++ ++
  MMETSP1174-20130828|13604_1 256 YYKILKVKRTTSgMTEIKQAYRRLALEAHPDKNL-AKRAPQGFKVLQDAYDTLTSD--REKYDRYLVKRerVKRQRFR 330
                  *********987368*******************.999***************865..88999986554004444443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.2     0.013        18     339     386 ..      86     133 ..      41     174 .. 0.56
   2 !   32.9   0.3   3.6e-12   4.9e-09       4      66 ..     256     317 ..     254     320 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.013
    TIGR03835 339 eatdqlkpkevdqiqeelkktkeieveelptkkadlveievddleelk 386
                  e +   +  e + i  + +++  +e ee+  +ka+ +++   ++ee +
  MMETSP1174-20130828|13604_1  86 EEEMAAEGAELEDIALDAQRAASAEEEEIAARKAEAEHAARAATEEKE 133
                  222233444555555555555555555555555555555555544433 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 3.6e-12
    TIGR03835   4 yyevLgidrDad.eqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDky 66 
                  yy +L+++r      eik+a+r+La   hPD+n a  a + f+ + +a+d L+    r++yD+y
  MMETSP1174-20130828|13604_1 256 YYKILKVKRTTSgMTEIKQAYRRLALEAHPDKNLAKRAPQGFKVLQDAYDTLTS--DREKYDRY 317
                  *********876268*************************************85..68999999 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.8    0.0028       3.8     235     405 ..      75     239 ..      40     356 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0028
    TIGR00934 235 kkstrvpsekfakrresrdidpedlyrsimmlqekheat.akirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedn 405
                      + +  + +++  +++ ++ed+    + + + +e + a+ + + ++a ++a+e++e++s+s + +++i + + t s+   ++q+ +r a++++  +s      + +t+ r+  s+ +e + ++ f+   +++ ++++  ++++ + e  ++   + r  ++s++++e  
  MMETSP1174-20130828|13604_1  75 AAAMEETLREIEEEMAAEGAELEDIALDAQRAASAEEEEiAARKAEAEHAARAATEEKEKKSKSSKRRQNILNMYRTESRA--ERQKRKRGARDSVGAGST-----ERRTRSRVPGSTGSEENAKEGFEARYTRFSDDKRYAHDEIDETEDPSRALARERLRSSSKHTVETM 239
                  333344444444455555555566555444443333222022233345555555555566566655555555554443332..233344444444444322.....334555555555555555555555555555555555555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 875.30
//
Query:       MMETSP1174-20130828|13607_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   16.7   0.0    0.00077   16.7   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.015   12.0   0.0    1.0  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.8e-07   0.00077     122     175 ..      64     117 ..      22     118 .] 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.8e-07
    TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                   ++i+G   gl  m  ge   +++Ps ++yG  G  + i ++ +++ +v ll i
  MMETSP1174-20130828|13607_1  64 GQVIKGWDLGLLDMCIGEVRRIVIPSEMGYGNNGTGNIIPPDATLIFDVELLGI 117
                  5788899999999999**********************************9987 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.2e-06     0.015     144     205 ..      23      86 ..      16      95 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.2e-06
    TIGR00115 144 verdaaekgDivtidfeg..kvdGeafeggka.edfelelgsgqfipgfeeqlvGmkaGeekeik 205
                   +r + +k D++t  ++g  +    +f++  +   f+++lg gq+i+g + +l++m +Ge++ i 
  MMETSP1174-20130828|13607_1  23 CTR-KTQKFDRLTTHYTGhlYRSKIEFDSIHGrRPFSFTLGTGQVIKGWDLGLLDMCIGEVRRIV 86 
                  344.9999999999999954447778887776467*************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 399.35
//
Query:       MMETSP1174-20130828|13606_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.69
# Mc/sec: 1507.35
//
Query:       MMETSP1174-20130828|13609_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1137.14
//
Query:       MMETSP1174-20130828|13610_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.73
# Mc/sec: 1439.22
//
Query:       MMETSP1174-20130828|13613_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 631.66
//
Query:       MMETSP1174-20130828|13615_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   14.7   0.0     0.0023   14.5   0.0    1.0  1  TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase


Domain annotation for each model (and alignments):
>> TIGR01322  scrB_fam: sucrose-6-phosphate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.7e-07    0.0023     407     438 ..      19      50 ..       2      54 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.7e-07
    TIGR01322 407 trsaelknkkkvklriflDkssvEifindGee 438
                    +  +k++ ++klr+++D+s++E f+++G +
  MMETSP1174-20130828|13615_1  19 NGNKDVKTTGSSKLRVLVDASVIESFVDNGVS 50 
                  4455677888999****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.61
# Mc/sec: 225.03
//
Query:       MMETSP1174-20130828|13621_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 429.81
//
Query:       MMETSP1174-20130828|13618_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|13617_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1774.91
//
Query:       MMETSP1174-20130828|13619_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.9   0.0      0.024   12.7   0.0    1.2  1  TIGR01637 phage_arpU: phage transcriptional regulator, ArpU family


Domain annotation for each model (and alignments):
>> TIGR01637  phage_arpU: phage transcriptional regulator, ArpU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.7e-06     0.024      50      95 ..      33      79 ..      10      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.7e-06
    TIGR01637 50 efssktEeaairnldaeqearaiveavs.inqLdeesrqIlkekYle 95
                 +f   +E+++++     +  +aiv+ ++ + qL +e r+++  kY +
  MMETSP1174-20130828|13619_1 33 DFARAVEQTVMQLRALDADGDAIVANIDgVRQLAKEARVLIASKYST 79
                 4666789999999999999**************************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.50
# Mc/sec: 261.34
//
Query:       MMETSP1174-20130828|13627_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|13625_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1171.40
//
Query:       MMETSP1174-20130828|13624_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.12s 00:00:00.52 Elapsed: 00:00:00.66
# Mc/sec: 1185.90
//
Query:       MMETSP1174-20130828|13630_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|13629_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          9    3.2   9.7        1.8    5.5   2.6    2.0  2  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2    0.0081        33      41     119 ..      52     134 ..      24     182 .. 0.54
   2 ?    5.5   2.6   0.00043       1.8      28     119 ..     237     330 ..     219     341 .. 0.55

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.0081
    TIGR03025  41 lilfala..glyrskrrrslleelarvllalllllllllalafllk...slslsrlvlllalllalllllllrlllrrllrrlr 119
                  +ilf ++   + +s  + s+ + + ++ + +++l +++l++ +l+    ++++s ++l   ++l ++l+ +   llr+l+++++
  MMETSP1174-20130828|13629_1  52 VILFGIVfqYCQDSPHSDSFGTFITSCDARVMFLDGVILLIGLLATqgrHVAFSGRWLRN-FVLFVALMRVGSPLLRTLTTSYS 134
                  222222221233355555555555555555566555555555555433345555544433.33334444444444444444433 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00043
    TIGR03025  28 esslllllllllllilfala..glyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlllrrllrrlr 119
                  +s+  +  l++l++ lfal+     + + ++s+ + +++v+l+  +++++ ++la+ + +++++++++++ +++ l++l++  +l+++  r+l 
  MMETSP1174-20130828|13629_1 237 HSNERVFGLMVLAVELFALLpeARCQLSANHSRANGVVTVILSAGVVTVTSILLALRAWGEAMQSTLVAYGFAVVLITLVCPLCLVHIQKRKLN 330
                  3333344444444444444421333345555666666665555555555555555444477888888888888888888877777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1014.85
//
Query:       MMETSP1174-20130828|13628_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 1334.56
//
Query:       MMETSP1174-20130828|13631_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 492.42
//
Query:       MMETSP1174-20130828|13633_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.83
# Mc/sec: 310.09
//
Query:       MMETSP1174-20130828|13635_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 306.87
//
Query:       MMETSP1174-20130828|13638_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 480.58
//
Query:       MMETSP1174-20130828|13639_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|13637_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-05   21.0   0.0      0.047   10.9   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0069   13.3   0.0       0.14    9.1   0.0    2.2  1  TIGR01607 PST-A: Plasmodium subtelomeric family
  ------ inclusion threshold ------
      0.019   12.4   0.1       0.77    7.2   0.0    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   3.4e-05     0.047      12     105 ..      76     177 ..      69     192 .. 0.66
   2 !    8.0   0.0   0.00027      0.37     187     228 ..     224     265 ..     219     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.4e-05
    TIGR02427  12 dkpvlvlinSLGtdlrlwdkvlealtk..dfrvlryDkrGHGlS.dvpegpysiedladdvlallDa.....lgiekaavcGlSlGGliaqaLaarrpdrve 105
                  + p++v++     ++ l  +  +a ++  +++ l++D rG G+S   p+ +  ied  + +  l  +     l+ +++ + G SlGG+++ + aa  +++ +
  MMETSP1174-20130828|13637_1  76 NSPTIVFCHENAGNIGLRLPEFHAQHRylNVNQLVFDYRGYGYSsGTPSEEGMIEDTFTMLRWLSGKveageLDGSSIILDGRSLGGAVSIHVAAAIGKLEK 177
                  67777777554444444433333333311466799*******994466777778988888777765511111555678889***********9998776555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00027
    TIGR02427 187 erleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeie 228
                  +++ ++++P+l ++  +D   Pp++++ + ++  ga+ +++ 
  MMETSP1174-20130828|13637_1 224 DKIPSVTIPLLFMSSIHDEIVPPSQMKMLYESAKGAKEKKFV 265
                  678899**************************9999988776 PP

>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   9.9e-05      0.14     263     316 ..     222     277 ..      70     283 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9.9e-05
    TIGR01607 263 didyipk.dipllfihskddcicyyegvvlfynkln.ienkelytvedmdhvltie 316
                   id+ip   ipllf+ s++d i    +++++y+ ++ +++k++ +      +++ e
  MMETSP1174-20130828|13637_1 222 SIDKIPSvTIPLLFMSSIHDEIVPPSQMKMLYESAKgAKEKKFVSFLATHNDISKE 277
                  6899997479**********999999999999987624556665555555555555 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.011        15      68      87 ..     153     173 ..     141     189 .. 0.80
   2 ?    7.2   0.0   0.00056      0.77     183     218 ..     225     260 ..     219     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.011
    TIGR01738  68 iwl.GWsLGGLvalhlalthp 87 
                  i+l G sLGG v++h+a+   
  MMETSP1174-20130828|13637_1 153 IILdGRSLGGAVSIHVAAAIG 173
                  444499***********9765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00056
    TIGR01738 183 alqkisvPvLrlyGqkDalvPakvvealdklapqse 218
                  ++ ++++P+L +   +D +vP+  +++l + a++++
  MMETSP1174-20130828|13637_1 225 KIPSVTIPLLFMSSIHDEIVPPSQMKMLYESAKGAK 260
                  56789***********************99998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.75
# Mc/sec: 535.00
//
Query:       MMETSP1174-20130828|13644_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 144.68
//
Query:       MMETSP1174-20130828|13640_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       511  (0.124573); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|13646_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 168.82
//
Query:       MMETSP1174-20130828|13643_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.65
# Mc/sec: 359.42
//
Query:       MMETSP1174-20130828|13641_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.67
# Mc/sec: 620.55
//
Query:       MMETSP1174-20130828|13649_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.49
# Mc/sec: 196.64
//
Query:       MMETSP1174-20130828|13651_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 419.73
//
Query:       MMETSP1174-20130828|13650_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1294.75
//
Query:       MMETSP1174-20130828|13652_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|13656_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 224.07
//
Query:       MMETSP1174-20130828|13654_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-13   46.2   0.0    1.1e-12   45.4   0.0    1.4  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
    0.00021   18.5   0.0    0.00038   17.7   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0074   14.4   0.0      0.028   12.5   0.0    1.9  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   8.3e-16   1.1e-12     124     260 ..     217     359 ..      98     388 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 8.3e-16
    TIGR02716 124 lyyeelhrsniklaielllkeaklddvkklidvgggigdiaaallkafpeldvtllnlpsaldlvre..nvaekgladrirgvavdiykesypea....davlfsrilysaneqlstillkkaydalrsggrllildmviddp 260
                   y ++ h   +  a  ll k+ +l +v+ ++dvggg g  +  + +a p l++t+l+lp      +    + +  +  r++   +d     +p      d vl+s i  s+ e +   l   a+ al++ggrl++ d++++d 
  MMETSP1174-20130828|13654_1 217 TYTQSQHNGSMATAKYLLKKKLNLGGVESMLDVGGGSGAFSYVFTRATPGLESTVLELPEVCKTGEGirATMSEDVQSRVTFKELDATSPDWPVQdgsfDIVLMSYISGSVPEPVIKSLYGNAHKALKAGGRLIVHDFMVNDT 359
                  56677788888888999999***************************************9988765411334568999***********999976223368************************************999885 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-07   0.00038      40     148 ..     243     358 ..     226     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.8e-07
    TIGR01934  40 eekvlDvatGtGdlaielakkae.akvtgvDlseemLevakk.kakek..eeanvefieadae..eLpfednsfdavtiafGlRNvtd..iekaLkelaRVlkpggrlvilefskpk 148
                   e +lDv +G+G ++  ++++++ ++ t++ l  e+ ++++  +a+ +   +++v+f+e da+  + p++d sfd+v +++    v +  i+    ++++ lk ggrl++ +f+ ++
  MMETSP1174-20130828|13654_1 243 VESMLDVGGGSGAFSYVFTRATPgLESTVLELP-EVCKTGEGiRATMSedVQSRVTFKELDATspDWPVQDGSFDIVLMSYISGSVPEpvIKSLYGNAHKALKAGGRLIVHDFMVND 358
                  5789****************9999888888774.45555543132222257899*****999844689*************777777632566667999***********9999776 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     2e-05     0.028      13     120 ..     236     351 ..     229     354 .. 0.65
   2 ?   -2.2   0.0      0.77   1.1e+03      17      42 ..     383     409 ..     374     415 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
    TIGR02469  13 akLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf..gvsnieiveg.dap..kaeedsleeadavf...vgGsgkk..lkeileaverrlrpggrivl 120
                  +kL+l   + +lD+G+G+G  +    r+ p ++ + +e  +e++++ e   + +  +v++ +++++ da   + + + +  +d+v+   ++Gs  +  +k +   +++ l+ ggr+++
  MMETSP1174-20130828|13654_1 236 KKLNLGGVESMLDVGGGSGAFSYVFTRATPGLESTVLEL-PEVCKTGEGIRATMseDVQSRVTFKElDATspDWPVQ-DGSFDIVLmsyISGSVPEpvIKSLYGNAHKALKAGGRLIV 351
                  689999889**********************98666664.4444433322222222455555555413333322333.5678888633367886543378999999999999999987 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.77
    TIGR02469  17 lkkgd.vllDiGaGtGsvtieaarlvp 42 
                  l +++ v    GaG G   ie ++++ 
  MMETSP1174-20130828|13654_1 383 LSPREvVTRMAGAGFGESRIETMEMIH 409
                  555552333459999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.77
# Mc/sec: 718.23
//
Query:       MMETSP1174-20130828|13662_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 839.93
//
Query:       MMETSP1174-20130828|13664_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 427.02
//
Query:       MMETSP1174-20130828|13663_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 851.33
//
Query:       MMETSP1174-20130828|13661_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.47
# Mc/sec: 1289.00
//
Query:       MMETSP1174-20130828|13665_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   12.9   9.4     0.0047   12.5   6.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.046   10.4   6.2       0.07    9.8   4.3    1.2  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   6.5   2.3e-06    0.0047     728     915 ..     239     422 ..     234     476 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-06
    TIGR02168 728 rklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleee.leeleeeleellkekasleealaelreeleelseelrelekkvkel 915
                  ++ +e++++++r++++  ql   ++++ ++lee + + ++ +++ +    + +  e+++e+le+++++++ ++++ + al ++ +++t +  +    +++l+  +k++ a+e+++   ++q+++l  + +++  e  +l+e+ ++ lee+++++   +++l++++++lr++le++++e+  l+++ +e 
  MMETSP1174-20130828|13665_1 239 TQKAEAHAKVARMRTSYDQLHLVYTRKLAHLEECKRRVRARQDHDDFVVGTVDMGERTMEALEQRLKRMQVACAEAD-ALGAFYRRITHHACK----TKNLAGEKKRLVAMEQQVSLCRQQTRDLLRKRQRVYLERGRLDEKdCKVLEEKIARIGGLRSALDQRMDRLRRRLEKQRHEISLLDHRFDEN 422
                  55566667777777777777777777777777777777777777777777777777777777777777766665433.344444444444333....34577888888888888888888888888888888888888765426688888888888888888888888888888888888888777765 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.3   3.4e-05      0.07      86     257 ..     248     426 ..     230     432 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.4e-05
    TIGR03794  86 varieqpelrerlqearekLtqLqeqlekvrnfqvrekearekkflksk..eaLeetigklreeeaaL..........sqevakqrqllsrklaklkrarillqqarkeqekrdeadkaeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnlnteiv 257
                  var+    ++ +l   + kL++L+e +++vr+ q +   +    +++++  eaLe+++++++ + a            +++  k+++l  +k  k + +++ +q     q+ rd   k +  y    + de++  +v+ +    +  l s  ++ +  +  r+++ r+ei+ l+++++ n+ i 
  MMETSP1174-20130828|13665_1 248 VARMRTSYDQLHLVY-TRKLAHLEECKRRVRARQDHDDFVVGTVDMGERtmEALEQRLKRMQVACAEAdalgafyrriTHHACKTKNLAGEK--K-RLVAMEQQVSLCRQQTRDLLRKRQRVYLERGRLDEKDC-KVLEEKIARIGGLRSALDQRMDRLRRRLEKQRHEISLLDHRFDENSSID 426
                  666666666666665.789***********99988877766666655551156999999988654443112655555444455555554444..2.34455555555566778888899999955557788875.6666555556667778889999**********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.57
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|13666_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1154.06
//
Query:       MMETSP1174-20130828|13667_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1718.73
//
Query:       MMETSP1174-20130828|13671_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1033.91
//
Query:       MMETSP1174-20130828|13674_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-14   50.3   0.0      1e-13   49.7   0.0    1.3  1  TIGR02464 ribofla_fusion: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02464  ribofla_fusion: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.4e-17     1e-13      96     152 ..       4      62 ..       1      63 [. 0.93

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.4e-17
    TIGR02464  96 edlrelLlstagkklVEasplDkiWGiGldkkdekiedes..kGkNlLGkvLmevReel 152
                  e+ r++Ll t+ ++l Ea+p D+iWGiGl+++++ ++ +   kG+N+LG +Lme Re +
  MMETSP1174-20130828|13674_1   4 ERERAILLGTGTSVLAEAAPRDRIWGIGLNATNRDVATPClwKGSNVLGWALMEAREAI 62 
                  56799***************************9999999999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 467.31
//
Query:       MMETSP1174-20130828|13673_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 815.03
//
Query:       MMETSP1174-20130828|13675_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 892.66
//
Query:       MMETSP1174-20130828|13680_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    6.9  13.1       0.52    6.3   9.1    1.2  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.1   0.00013      0.52     174     291 ..      25     148 ..      19     170 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00013
    TIGR03007 174 ekkleeaenrLkaFkqenvgilpdqegdyyeelkeaeeeLeearlelkeakaqrdalkrqlageepvllae..esvasseldsriealekqLdeLrlrYtdkh.........PdviavkreiaeLeerk 291
                  ek++ee+e+  ++F++ +  +   + ++  ++l++ ++e+e  r+e++ a ++ + l +    e+  l+ +  + + ++e + r+++ ++++++Lr++Y+ +           ++ ++kre++ L++ +
  MMETSP1174-20130828|13680_1  25 EKRIEEVEQDFDRFRRAHRRMPEAELQTKIARLAGEKAEVE-GRIEKERADKNQALLDK----EKYRLQIHhlTRALQREQERRLASAQQEIEQLRVQYLAREekfvldgdrQELRNIKRELDDLRKMN 148
                  79**************9988765555544555554444443.24444444444444444....333333334467889999******************864300111111134556666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|13676_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   17.4   3.8       0.14   10.4   0.2    3.4  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
  ------ inclusion threshold ------
      0.035   11.8   0.3       0.11   10.1   0.0    1.9  2  TIGR01004 PulS_OutS: lipoprotein, PulS/OutS family


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0021       4.3       4      37 ..     149     179 ..     147     186 .. 0.89
   2 ?   -0.5   0.0      0.16   3.3e+02       5      27 ..     202     224 ..     199     230 .. 0.82
   3 !   10.4   0.2   6.7e-05      0.14       3      32 ..     252     277 ..     251     293 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0021
    TIGR01557   4 vvWteelhrrFlqAvqklGgedkatPkkIlelmk 37 
                   +W++e++++  +Av   + +++   k+I+e ++
  MMETSP1174-20130828|13676_1 149 RRWSPEEDEKLKKAVHINDAKNW---KRIAESFV 179
                  68*********************...***98875 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.16
    TIGR01557   5 vWteelhrrFlqAvqklGgedka 27 
                  +Wt e++    + v ++G +++ 
  MMETSP1174-20130828|13676_1 202 PWTTEEDGQVRDLVTQYGAKKWS 224
                  79999999999999999998884 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 6.7e-05
    TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkI 32 
                  + +Wte+++r  l+A q+lG   +    +I
  MMETSP1174-20130828|13676_1 252 KKPWTENEDRIILEAHQRLGN-RW---AEI 277
                  678******************.99...455 PP

>> TIGR01004  PulS_OutS: lipoprotein, PulS/OutS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.5e-05      0.11      51     109 ..     142     200 ..     108     202 .. 0.80
   2 ?   -2.6   0.0      0.46   9.5e+02      84     118 ..     354     388 ..     346     390 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.5e-05
    TIGR01004  51 ylkvkcnrsdlPddeailkvavnvavkkGWdslraeslskrsedlyqrllkdstPeatk 109
                       cnr   P+++  lk av++   k W+ + +  + +   +   r +k   Pe +k
  MMETSP1174-20130828|13676_1 142 RPNKSCNRRWSPEEDEKLKKAVHINDAKNWKRIAESFVDRTEVQCLHRWQKVLNPELVK 200
                  44578****************************99999999888888888888887766 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.46
    TIGR01004  84 raeslskrsedlyqrllkdstPeatkcsefnrrlv 118
                  ++e+++k+s+++  +  k++  + ++ ++ n+r+v
  MMETSP1174-20130828|13676_1 354 KKEKVPKKSKKVKDETEKEGIGDNVQSKKDNQRIV 388
                  57899999***999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2393.80
//
Query:       MMETSP1174-20130828|13682_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 523.56
//
Query:       MMETSP1174-20130828|13686_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 600.55
//
Query:       MMETSP1174-20130828|13685_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.5   3.1       0.31    7.5   0.0    2.5  2  TIGR02259 benz_CoA_red_A: benzoyl-CoA reductase, subunit A


Domain annotation for each model (and alignments):
>> TIGR02259  benz_CoA_red_A: benzoyl-CoA reductase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   7.6e-05      0.31      67     116 ..     202     251 ..     160     302 .. 0.84
   2 ?    2.5   1.2    0.0026        11      94     161 ..     653     718 ..     617     733 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 7.6e-05
    TIGR02259  67 vaervdeildalernfrliqfleqlddleetcvaqleaerfkakekalve 116
                   a+r++++ + l+ n+   qf+ q+d l e+ v ql ++r+ + ++ + +
  MMETSP1174-20130828|13685_1 202 PADRCSDLAKVLNTNMLSAQFIGQVDSLRESLVDQLSTDRLWGGKHKITG 251
                  5688999999******************************9887766655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0026
    TIGR02259  94 leetcvaqleaerfkakekalvealtvvfarlreeeadklyapdakrksdffrdl.agsrfmviaeeva 161
                  leet + + e  r++  e   v  ++    rl +eead+l   +a+r++d   +l a s  m  a+e a
  MMETSP1174-20130828|13685_1 653 LEET-QDESEKIRLAVEEADRVAQIE--AMRLAQEEADRLALEEAQRQADEEANLmAQSEAMRLAQEEA 718
                  4444.334455555444433333332..458999**************998766427777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.47
# Mc/sec: 2561.15
//
Query:       MMETSP1174-20130828|13687_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1212.65
//
Query:       MMETSP1174-20130828|13690_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1174-20130828|13693_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   39.1   0.1    1.9e-10   38.2   0.1    1.3  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    0.00033   17.0   0.1    0.00033   17.0   0.1    1.5  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0079   13.4   0.2      0.013   12.7   0.1    1.3  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
  ------ inclusion threshold ------
      0.013   12.7   0.1      0.022   11.9   0.0    1.4  1  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
        4.1    5.7  15.5        2.4    6.4   5.3    3.3  3  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   2.4e-13   1.9e-10     176     237 ..      16      78 ..      12      83 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.4e-13
    TIGR00737 176 eGeanwdiiarvkqavk.iPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeieq 237
                   G+a+w  ia +k+av+ +P+i+nG i++ +  +a+L et ad+v+ + + l  P lf++ +q
  MMETSP1174-20130828|13693_1  16 TGRADWGAIAGIKAAVSgVPIIANGGIEDLAGVEACLAETRADAVMSAEALLEDPALFNRSSQ 78 
                  59*******************************************************998765 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     4e-07   0.00033     277     341 ..      25      85 ..      15     102 .. 0.86
   2 ?   -3.1   0.1      0.48   3.9e+02     125     348 ..     205     230 ..     155     243 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4e-07
    TIGR03997 277 aaireav.dlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPelaakakegreeeiRtClaC 341
                  a i++av  +P++a G i+d a  e  lae +ad v  + a++ DP+l ++       +  tCl C
  MMETSP1174-20130828|13693_1  25 AGIKAAVsGVPIIANGGIEDLAGVEACLAETRADAVMSAEALLEDPALFNRSS-----QTATCLCC 85 
                  678888846*************************************9988654.....45567777 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.48
    TIGR03997 125 frevPkaleesdiaevvegfakvaahvaagGfDGvelqasqsslvRqFlspltnrRtDeYGGslenRaRlllevleavRkaiGedrvlGvRlcgdelveGGltlaeaveiaalleatglvDylntsigvaletLhlveasmavppgyaaelaaaireavdlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPelaakakegreeeiRtClaCnqeCvgr 348
                  + ev  + e                                                                                                                                                                                                        eiR C+a      + 
  MMETSP1174-20130828|13693_1 205 SNEVCAEEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GREIRICVAHASASSAS 230
                  333333333......................................................................................................................................................................................................33455555444444444 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   1.6e-05     0.013     185     230 ..      20      66 ..      10      68 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
    TIGR03572 185 dlelvktvskavk.iPvialGGagslddlvevvleagasavaaaslf 230
                  d   +  +++av+ +P+ia+GG++ l+ + + + e+ a+av  a+ +
  MMETSP1174-20130828|13693_1  20 DWGAIAGIKAAVSgVPIIANGGIEDLAGVEACLAETRADAVMSAEAL 66 
                  556677777777559**************************998765 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05     0.022     187     231 ..      20      65 ..      10      97 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.6e-05
    TIGR00735 187 dlellkkvkeavk.iPviasgGaGkaehleeaflkgkadaaLaasv 231
                  d   +  +k av+ +P+ia gG+     +e ++++++ada+++a  
  MMETSP1174-20130828|13693_1  20 DWGAIAGIKAAVSgVPIIANGGIEDLAGVEACLAETRADAVMSAEA 65 
                  5556677787775599*******9999999999******9999865 PP

>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.11        92      29      41 ..      76      85 ..      42      86 .. 0.76
   2 ?    0.9   0.0      0.16   1.3e+02      22      37 ..     180     195 ..     159     197 .. 0.67
   3 ?    6.4   5.3     0.003       2.4      24      43 ..     222     241 ..     210     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
    TIGR03892 29 tsssSsCsTcsct 41
                 +s +++C    c+
  MMETSP1174-20130828|13693_1 76 SSQTATC---LCC 85
                 3445555...444 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.16
    TIGR03892  22 a.ssgatstsssSsCsT 37 
                      ++t t  ++ CsT
  MMETSP1174-20130828|13693_1 180 LrMKHSTETAPTA-CST 195
                  2557899999999.776 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.003
    TIGR03892  24 sgatstsssSsCsTcsctsS 43 
                  ++a+++s s+s+ Tc ++sS
  MMETSP1174-20130828|13693_1 222 AHASASSASASSNTCASCSS 241
                  47788888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1020.72
//
Query:       MMETSP1174-20130828|13694_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.67
# Mc/sec: 155.63
//
Query:       MMETSP1174-20130828|13696_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   16.8   0.1      0.001   14.8   0.0    1.5  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00068   17.1   0.2     0.0013   16.2   0.2    1.5  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0011   16.5   0.3      0.002   15.7   0.2    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0     0.097   1.3e+02     704     737 ..      74     107 ..      70     113 .. 0.83
   2 !   14.8   0.0   7.7e-07     0.001     819     874 ..     137     192 ..     120     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.097
    TIGR02917 704 lgfeleGdlalrqkdykaAiqaykkalkrapssq 737
                     + eG+  ++++++ +A++ + +al++ p ++
  MMETSP1174-20130828|13696_1  74 KRLKCEGNGLAESENFSRALTRWDAALRILPLNS 107
                  5567899999999999999999999999888765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 7.7e-07
    TIGR02917 819 dpkAleyAekAlklapnqpailDTlGwvlvekgeakealkllrkAvklapeaaair 874
                  d +A++    A +l+p  ++   TlG ++++ ge + al+ ++ A++l p++a+i+
  MMETSP1174-20130828|13696_1 137 DFRAIQASHMATELNPHWADGWLTLGRAQMNYGEHAVALTSFSTALELEPSNADIQ 192
                  45788888888899999999888999999999999999999999999999999887 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   9.2e-07    0.0013      27     101 ..     117     191 ..      99     194 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9.2e-07
    TIGR02521  27 rekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                  + +aa  +  +a ++++ ++  +A ++   A el+p+ ad +l l+ + ++ ge+  A  sf +Al+l+p n+d+
  MMETSP1174-20130828|13696_1 117 AVEAAYLYELKAQAFMALDQDFRAIQASHMATELNPHWADGWLTLGRAQMNYGEHAVALTSFSTALELEPSNADI 191
                  4455555666789999999999**************************************************998 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.5e-06     0.002      52     135 ..     120     204 ..     116     205 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.5e-06
    TIGR02552  52 akywlgL.aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeamles 135
                  a y++ L a +++al++  +Ai+a  +a+ l+++ ++  + ++   ++ ge + Al  + +a+e+  +++  +e  +ra+ ++es
  MMETSP1174-20130828|13696_1 120 AAYLYELkAQAFMALDQDFRAIQASHMATELNPHWADGWLTLGRAQMNYGEHAVALTSFSTALELEPSNADIQEDMKRAQRVIES 204
                  6677777688999*********************************************************999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:01.15
# Mc/sec: 343.63
//
Query:       MMETSP1174-20130828|13697_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1580.73
//
Query:       MMETSP1174-20130828|13695_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1267.71
//
Query:       MMETSP1174-20130828|13701_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 604.95
//
Query:       MMETSP1174-20130828|13700_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|13708_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   14.8   1.1     0.0016   14.5   0.8    1.0  1  TIGR00630 uvra: excinuclease ABC subunit A
  ------ inclusion threshold ------
      0.021   12.0   0.3       0.12    9.5   0.0    1.9  2  TIGR04092 LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD
      0.024   11.6   0.5       0.03   11.3   0.4    1.1  1  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase


Domain annotation for each model (and alignments):
>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   1.1e-06    0.0016     118     196 ..      21     100 ..      12     104 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-06
    TIGR00630 118 cpecgekiekqsaeqivdeilelpegkrvillaPvvrerkgefkklleklkkqGfarvrvdg.evveleeelklekqkkh 196
                    ++++   +q  +q+v +il+ + ++r+ +la v  ++   +++ l k++++G  r rv + +++e+ +++  + q+k 
  MMETSP1174-20130828|13708_1  21 ERQQQQAAMEQQRQQMVYSILTPEAKTRLSMLAMVKEDKVRMVEDQLIKMATSGALRERVSEaQLIEMLDKVVQSSQTKV 100
                  4566777788999*********************999999********************76245555555544444444 PP

>> TIGR04092  LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.037        51      87     121 ..       5      39 ..       2      63 .. 0.80
   2 ?    9.5   0.0   8.8e-05      0.12     132     176 ..      73     117 ..      69     122 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.037
    TIGR04092  87 pfliGrggtqsLthainlgsigdelknkkvvfiiS 121
                  p++ G+++  s  +a++ ++++  +++++  ++ S
  MMETSP1174-20130828|13708_1   5 PMQAGSNYGASAEQAAERQQQQAAMEQQRQQMVYS 39 
                  67778888888888888888888887777777766 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 8.8e-05
    TIGR04092 132 edaFqarfSelqvynflknekisketkrkaakRllelskvksdki 176
                  + a+  r+Se q++++l++   s++tk k+++R   ++ +++d +
  MMETSP1174-20130828|13708_1  73 SGALRERVSEAQLIEMLDKVVQSSQTKVKIMRRPSAFPDEDDDDS 117
                  668899******************************998777765 PP

>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   2.2e-05      0.03      76     138 ..      31      94 ..      19      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.2e-05
    TIGR01508  76 klrvpldarilnkeaktlvavseaeseekveelekkgvevvkfg..eervdLeklldaleskgvr 138
                  + r ++ + il+ eakt + +  + +e+kv+ +e++ ++++  g  +erv   +l+++l +k v+
  MMETSP1174-20130828|13708_1  31 QQRQQMVYSILTPEAKTRLSMLAMVKEDKVRMVEDQLIKMATSGalRERVSEAQLIEML-DKVVQ 94 
                  567788899***************************99999876226677777889988.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       428  (0.104339); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.82
# Mc/sec: 196.37
//
Query:       MMETSP1174-20130828|13706_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.77
# Mc/sec: 1393.60
//
Query:       MMETSP1174-20130828|13713_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 706.14
//
Query:       MMETSP1174-20130828|13716_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 984.42
//
Query:       MMETSP1174-20130828|13720_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 573.33
//
Query:       MMETSP1174-20130828|13726_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   13.9  22.7      0.002   13.8  15.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.003   13.1  22.2     0.0033   13.0  15.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.8    6.6   8.4       0.76    7.8   2.0    2.5  2  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
        4.3    4.0  17.3          7    3.3  12.0    1.3  1  TIGR00998 8a0101: efflux pump membrane protein
        4.7    4.2  10.9        5.6    3.9   7.5    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  15.7   2.4e-06     0.002     251     394 ..       3     143 ..       1     155 [. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-06
    TIGR02168 251 aeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeq 394
                  aee++++le++++   e+le+  ++++ +  e++++q+el++++++++ ++++ ++++ + +       +l++ lee ++ ke+l++e ++++ee+  ++e+++slea++ ++e++++e+  + +++ + ++ l+++   +e  
  MMETSP1174-20130828|13726_1   3 AEEDRRRLERQVQVQREKLEQETEARKVAAIEADRAQDELKAVRRDLQSVQKTAKHADTETR---GRDVRLNRALEEVKRLKEKLAKEGSTQSEEFGAMRESVASLEAKVIRLERQKQEVLGAFKKQLKLIDVLKRQKIHMEAA 143
                  67888899999999999999999999999999999999999999999999999999988865...7788889999999999999999999999999999999999999999999999999888888888888877776666655 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0  15.4     4e-06    0.0033     328     469 ..       3     141 ..       1     157 [. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4e-06
    TIGR02169 328 aeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekae 469
                  ae+++++l+++++  ++++e+e   r+    e + +++el+++r++l++v+k+a+++  e+  +  +l+++ ee + lk   ++l  e   ++ee   +++ ++++e+k+  le +++e+  + kk+ + +  lk ++ ++e
  MMETSP1174-20130828|13726_1   3 AEEDRRRLERQVQVQREKLEQETEARKVAAIEADRAQDELKAVRRDLQSVQKTAKHADTETRGRDVRLNRALEEVKRLK---EKLAKEGSTQSEEFGAMRESVASLEAKVIRLERQKQEVLGAFKKQLKLIDVLKRQKIHME 141
                  688999999***999******99999999999******************************99999998888888887...999999999****************************99999999888877777666555 PP

>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.0   0.00092      0.76      14      49 ..      30      65 ..      20      86 .. 0.79
   2 ?    1.5   0.1     0.088        72      19      41 ..     113     135 ..      94     151 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00092
    TIGR01690 14 aaladsasereeLaavirqLdalerlaeraaaaakq 49
                  a+ +++  ++eL+av r L+ ++++a++a ++++ 
  MMETSP1174-20130828|13726_1 30 VAAIEADRAQDELKAVRRDLQSVQKTAKHADTETRG 65
                 45556677899*******************988764 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.088
    TIGR01690  19 sasereeLaavirqLdalerlae 41 
                  + +++e L a  +qL+ ++ l +
  MMETSP1174-20130828|13726_1 113 ERQKQEVLGAFKKQLKLIDVLKR 135
                  55677888999999999987654 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  12.0    0.0085         7      78     196 ..      31     147 ..       3     156 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0085
    TIGR00998  78 aelalekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqae..............ldleR.resllkkgliskEeldrarkallsakaa...LeaaiqeaeaA.nqalvrveelkkqpavkeakerlk 196
                  a ++ ++a+ +l a++r  + ++ + k+                      +               + +R +e+l+k+g  + Ee+   r+ ++s +a+   Le  +qe + A +++l+ ++ lk+q+   ea+ +l+
  MMETSP1174-20130828|13726_1  31 AAIEADRAQDELKAVRRDLQSVQKTAKHA---------------------DtetrgrdvrlnralEEVKRlKEKLAKEGSTQSEEFGAMRESVASLEAKvirLERQKQEVLGAfKKQLKLIDVLKRQKIHMEAARALQ 147
                  33444444444444444444444444444.....................444444444444444466663679*****************9999888544489999998877478999********99888888876 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   7.5    0.0068       5.6      33     139 ..      14     120 ..       3     146 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0068
    TIGR03752  33 qtadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkl 139
                   + +++  e   e  k + ie+d  +d l+ +  +l++++k++++ ++e +    + +r  ++ ++++e+++++ +++++e+ +++e +++  ak+ +l ++ q+ l
  MMETSP1174-20130828|13726_1  14 VQVQREKLEQETEARKVAAIEADRAQDELKAVRRDLQSVQKTAKHADTETRGRDVRLNRALEEVKRLKEKLAKEGSTQSEEFGAMRESVASLEAKVIRLERQKQEVL 120
                  3456677777888889999**************99999999999999998888888888888888888888888888888777777776666655555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 445.46
//
Query:       MMETSP1174-20130828|13728_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.48
# Mc/sec: 206.23
//
Query:       MMETSP1174-20130828|13727_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 738.31
//
Query:       MMETSP1174-20130828|13731_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|13723_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|13730_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 506.55
//
Query:       MMETSP1174-20130828|13736_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 505.20
//
Query:       MMETSP1174-20130828|13733_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-186  619.6   0.0   1.2e-186  619.3   0.0    1.0  1  TIGR01810 betA: choline dehydrogenase
    2.8e-80  268.4   0.1    9.1e-54  181.0   0.1    2.1  2  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    1.5e-06   26.0   0.8    2.4e-06   25.3   0.6    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0023   14.9   0.4     0.0033   14.3   0.3    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0028   14.8   0.1     0.0049   14.0   0.1    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
     0.0044   13.8   0.0      0.026   11.2   0.0    2.0  2  TIGR02462 pyranose_ox: pyranose oxidase
     0.0059   13.4   0.1     0.0088   12.9   0.1    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0073   13.3   0.0      0.011   12.7   0.0    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.009   12.7   1.0      0.016   11.8   0.4    1.5  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.012   12.8   0.9      0.019   12.1   0.6    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.019   12.0   0.1      0.031   11.3   0.1    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.063    9.9   0.1      0.093    9.4   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.067   10.0   0.0       0.09    9.6   0.0    1.1  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.072    9.6   0.6        0.1    9.1   0.4    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
      0.073    9.6   0.1       0.17    8.4   0.1    1.6  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.075    8.6   0.2       0.11    8.1   0.1    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
       0.11    9.0   0.7       0.16    8.4   0.5    1.2  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  619.3   0.0    5e-189  1.2e-186       1     532 []      14     565 ..      14     565 .. 0.92

  Alignments for each domain:
  == domain 1    score: 619.3 bits;  conditional E-value: 5e-189
    TIGR01810   1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGgsdy...rfdlliqmpaalayplsnkrynwayetepepflnnrrveaarGkvlGGsssinGmvyvrGnaldlekwakeeGleswayadvlpyykrletsdggee..dyrGtdGpvkvrrgkad..nplfealieaGveaGyektedlnGfkqeGfGpldrtvt.....rGrrvsaarayldpalkrknlevrtralvdkivfegk............ratGvefkkggikervkankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhlelylqqackkpvslypalqklkqpviGaqwllgkkGvgasnhfeaggfvrsaeevkypniqyhflpvaisydGkka...akehGfqvhvGsmlsksrGhvkikskdpkekpailfnylsheedkeefreairvtreilkqkaldlyrGreispGeevqtdeeidefvredaetalhpcgtckmG.akddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadiirGkkpl 532
                  dy+i+GaGsaG vla rl e++ nsv++leaGg      ++ l+++mp+al  p++   +nw++et+p  +l++++v+++rG++lGGsssinGmvyvrG++ld+e w++  G+ +w +  v py+kr+e   g ++  + rG +Gp++v+ g+      lf+++i+aG eaGy   +d+nG +qeG+ p+  +v+     +G r+s a +yl p ++  +++vrt+a+v+++  e+k            ra+G+e + g+      a+++vilsagai sp+llq sG+Gd  +l ++g++ +++lpGvG+nl dhle+y+q ac +  sl p l++++++ iG++w+l++ G+ga+nhfeaggf+rs+ +v+yp+iq+hflpva+sydG ++   +  h fq+h+G ++s+srG v   s d ++ p i f y++h+ed+ +fr+air++rei+ q+ +d+ +  eispG ++++d e+d ++re++e+a+hpcgtckmG +++d+ +vv p+++v G eglrvvdasi+p i +Gnlnap+im++ek++d+i+G+ +l
  MMETSP1174-20130828|13733_1  14 DYVIVGAGSAGCVLARRLVENG-NSVILLEAGGEKTvkgPLSLFTRMPTALSIPMHLSNFNWGFETQPAEKLDGKQVSCPRGRGLGGSSSINGMVYVRGHPLDFEAWKD-AGATGWGWESVAPYFKRMESWGGDDDagGLRGREGPLHVKDGDNAleTSLFRTFIKAGAEAGYGSVPDYNGERQEGLAPMPMSVFhsgprKGERCSVAASYLAPVQS--DVDVRTNAVVSRVLWEQKsaeeegkeekkpRAVGIECQDGQ---SFYATRDVILSAGAIGSPHLLQVSGVGDRVLLDKMGVPCVMNLPGVGQNLMDHLEIYFQFACARD-SLRPFLSYWRKALIGLRWILFRDGLGATNHFEAGGFIRSKAGVQYPDIQFHFLPVAVSYDGVTSpptPSGHSFQLHLGCNRSPSRGYVAATSADVRDPPIIDFKYMTHDEDWVDFRKAIRLAREIIAQPCFDELECAEISPGADMKSDAELDAYLREHLESAYHPCGTCKMGdPESDPEAVVGPDGKVVGTEGLRVVDASIFPTIPNGNLNAPTIMVAEKMSDMILGNASL 565
                  9*******************87.79*******98653336899****************************************************************98.9******************9888877889************98765599*******************************9888544444799*********99865..78999999999999887622222223333345666665555...77899*********************************************************986.9************************************************************986222578******************************************************************************************************4579***************************************************8765 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.1   3.8e-56   9.1e-54       1     302 [.      13     333 ..      13     342 .. 0.83
   2 !   85.4   0.0   3.6e-27   8.8e-25     342     486 ..     406     559 ..     382     560 .. 0.84

  Alignments for each domain:
  == domain 1    score: 181.0 bits;  conditional E-value: 3.8e-56
    TIGR03970   1 sDvlvvGaGsaGsvlaarLsedpsatvtvleaGp..gyldpsrlpaqltdalrlPigaassvverygseLtdep.rraaaivrGrvlGGsgavnGayfcraleaDfeawsi...asWsyddvLpafraiet..DlDfetelhGsaGPipvrrtael..sgisaafvaaaraaGfgeeaDlngsgpdlsaGvgavPlnv.....ddgrrvstavayLlPalkrpnLrveaetrvvrilfsat............ravGvevlgdgaaetlradrvvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvDhPevvlpvrlek 302
                  +D ++vGaGsaG+vla rL e+ + +v++leaG   +++ p +l + +  al +P+   s++ + ++++ +++   ++ +  rGr lGGs+++nG  ++r+ + Dfeaw     ++W ++ v p+f+++e     D ++ l G++GP+ v+   +   + + ++f +a  +aG+g   D ng   +   G++ +P+ v      +g+r s a++yL P    +++ v++++ v+r+l++++            ravG+e++++  ++   +  v+l+aGa+ s++lL +sGvG+   L + Gv+ v++lP vG++++Dh e+ ++++ ++
  MMETSP1174-20130828|13733_1  13 ADYVIVGAGSAGCVLARRLVEN-GNSVILLEAGGekTVKGPLSLFTRMPTALSIPMH-LSNFNWGFETQPAEKLdGKQVSCPRGRGLGGSSSINGMVYVRGHPLDFEAWKDagaTGWGWESVAPYFKRMESwgGDDDAGGLRGREGPLHVKDGDNAleTSLFRTFIKAGAEAGYGSVPDYNGERQE---GLAPMPMSVfhsgpRKGERCSVAASYLAPVQ--SDVDVRTNAVVSRVLWEQKsaeeegkeekkpRAVGIECQDG--QSFYATRDVILSAGAIGSPHLLQVSGVGDRVLLDKMGVPCVMNLPgVGQNLMDHLEIYFQFACAR 333
                  799****************876.7899*****9722466788889999999999986.589*******99977515666777***************************8755589**************84334567889**********988551155679*******************7666...********9554445799***********86..678899999999999875422233333333479*****998..3444556699**********************************************998877655 PP

  == domain 2    score: 85.4 bits;  conditional E-value: 3.6e-27
    TIGR03970 342 dpklGvaLmrpksrGeirlasadpaaapviehrydssaaDrealregaalaeeLleave........astllepavkeseaswvrarlatsqhlsGsarmga.eddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefl 486
                  + +l ++  r+ srG +  +sad +++p+i+++y ++ +D   +r++ +la+e+++++          s+ ++  +  + ++++r +l  + h +G+++mg  e dp+avv +  +v G egL vvD+si+P+i+    +a  +mvae+ ++++
  MMETSP1174-20130828|13733_1 406 SFQLHLGCNRSPSRGYVAATSADVRDPPIIDFKYMTHDEDWVDFRKAIRLAREIIAQPCfdelecaeISPGADMKSDAELDAYLREHLESAYHPCGTCKMGDpESDPEAVVGPDGKVVGTEGLRVVDASIFPTIPNGNLNAPTIMVAEKMSDMI 559
                  445555567899******************************************99876666644434555666667777889999***************8256********************************************99986 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.6   9.9e-09   2.4e-06       2      32 ..      14      44 ..      13      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 9.9e-09
    TIGR02032  2 DvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                 D v+vGaG aG+ +A+rl ++G +V+lle  
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLEAG 44
                 99***************************86 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.3   1.4e-05    0.0033       3      30 ..      16      43 ..      14      49 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
    TIGR03197  3 avIGaGiAgaalalsLarrGvqvtllek 30
                 +++GaG Ag++la +L + G +v lle+
  MMETSP1174-20130828|13733_1 16 VIVGAGSAGCVLARRLVENGNSVILLEA 43
                 79************************97 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1     2e-05    0.0049       2      31 ..      15      44 ..      14      63 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
    TIGR00745  2 iailGaGAvGsllgakLaragadVtllars 31
                 ++i+GaG+ G++l+ +L + g+ V+ll  +
  MMETSP1174-20130828|13733_1 15 YVIVGAGSAGCVLARRLVENGNSVILLEAG 44
                 79***********************99765 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00011     0.026       2      34 ..      14      46 ..      13      62 .. 0.91
   2 ?   -0.5   0.0      0.38        92     270     296 ..     273     299 ..     231     333 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
    TIGR02462  2 dvfiaGsGPigatyakllvdaglkvvmveiGaa 34
                 d +i+G+G  g+  a++lv++g  v+++e G  
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLEAGGE 46
                 889**************************9965 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.38
    TIGR02462 270 vaksfvlaaGavataqilvnsgisslg 296
                   ++  +l+aGa++++ +l  sg+++  
  MMETSP1174-20130828|13733_1 273 ATRDVILSAGAIGSPHLLQVSGVGDRV 299
                  44567899*************998554 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.6e-05    0.0088       3      31 ..      14      42 ..      12      48 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.6e-05
    TIGR00031  3 dyiivGaGlsGivlaeilaklnkrvlvve 31
                 dy+ivGaG +G vla  l + +++v+++e
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLE 42
                 9**************************99 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.5e-05     0.011       1      34 [.      14      47 ..      14      61 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.5e-05
    TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapkl 34
                 D +++G+G Ag+++A +l + g +v l+ea  + 
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLEAGGEK 47
                 89**************************997655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.4   6.8e-05     0.016       2      31 ..      16      45 ..      15      51 .. 0.91
   2 ?   -2.4   0.0       1.4   3.3e+02     134     165 ..     256     289 ..     245     308 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.8e-05
    TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknk 31
                 +i+G+G aG + A ++ e+g++V+llE+  
  MMETSP1174-20130828|13733_1 16 VIVGAGSAGCVLARRLVENGNSVILLEAGG 45
                 8**************************875 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.4
    TIGR00275 134 keeekfevet..ekkeleakkvilatGgksypkl 165
                  k+ + +++e+  +++ +++  vil+ G    p+l
  MMETSP1174-20130828|13733_1 256 KKPRAVGIECqdGQSFYATRDVILSAGAIGSPHL 289
                  5566788888745666788899**9999888876 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   7.8e-05     0.019       2      31 ..      16      45 ..      15      48 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.8e-05
    TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarr 31
                 v+vG+G AG+  A +L+++G  v llEa+ 
  MMETSP1174-20130828|13733_1 16 VIVGAGSAGCVLARRLVENGNSVILLEAGG 45
                 7**************************985 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013     0.031      21      52 ..      12      43 ..       9      52 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00013
    TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvler 52
                 ++D +ivGaG++G   a+ l ++g  v++le 
  MMETSP1174-20130828|13733_1 12 KADYVIVGAGSAGCVLARRLVENGNSVILLEA 43
                 5899*************************995 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00039     0.093       1      36 [.      14      48 ..      14      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00039
    TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36
                 d vIvG+G +G +lA +L +++  +v l+ea  +++
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENG-NSVILLEAGGEKT 48
                 779****************888.9999999876554 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00037      0.09       2      54 ..      14      64 ..      13      83 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00037
    TIGR03378  2 DviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGslDllsklpdgka 54
                 D +i+G+G aG   a rl+e+G+ ++++ aG        G l l++++p + +
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLEAGGEK--TVKGPLSLFTRMPTALS 64
                 89**************************999763..45677777777776655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4   0.00042       0.1       2      30 ..      16      44 ..      15      50 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00042
    TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekr 30
                 v++GaG +G  lA rL  +G +v +le+ 
  MMETSP1174-20130828|13733_1 16 VIVGAGSAGCVLARRLVENGNSVILLEAG 44
                 79************************975 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0007      0.17       2      31 ..      14      43 ..      13      51 .. 0.93
   2 ?   -3.5   0.0       2.9   7.1e+02     278     300 ..     473     495 ..     469     498 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0007
    TIGR01377  2 DvivvGaGvmGsaaayqLakrgkkvLLleq 31
                 D ++vGaG+ G++ a +L  +g++v+Lle 
  MMETSP1174-20130828|13733_1 14 DYVIVGAGSAGCVLARRLVENGNSVILLEA 43
                 7899************************95 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.9
    TIGR01377 278 rekgadiedveeLkkfvkdrlpg 300
                  + +gad++  +eL  +++++l  
  MMETSP1174-20130828|13733_1 473 ISPGADMKSDAELDAYLREHLES 495
                  6789999*************975 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00044      0.11     168     199 ..      12      43 ..       7      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00044
    TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvde 199
                   +D ++vGaG+aG   Ar   ++G +vil++ 
  MMETSP1174-20130828|13733_1  12 KADYVIVGAGSAGCVLARRLVENGNSVILLEA 43 
                  57999************************975 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5   0.00066      0.16       2      32 ..      13      43 ..      12      51 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00066
    TIGR01350  2 ydvvviGgGpgGYvaAiraaqlglkvalvek 32
                  d v++G+G +G v A r  ++g +v+l+e 
  MMETSP1174-20130828|13733_1 13 ADYVIVGAGSAGCVLARRLVENGNSVILLEA 43
                 699************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:00.64
# Mc/sec: 1237.40
//
Query:       MMETSP1174-20130828|13738_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1174-20130828|13741_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1654.26
//
Query:       MMETSP1174-20130828|13739_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-153  508.7   0.1   1.2e-153  508.5   0.1    1.0  1  TIGR02239 recomb_RAD51: DNA repair protein RAD51
   1.3e-127  423.2   0.0   1.4e-127  423.0   0.0    1.0  1  TIGR02238 recomb_DMC1: meiotic recombinase Dmc1
    1.2e-98  328.2   0.0    1.3e-98  328.0   0.0    1.0  1  TIGR02236 recomb_radA: DNA repair and recombination protein RadA
    1.3e-36  124.3   0.0    1.6e-36  124.0   0.0    1.1  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
    1.2e-12   45.6   0.0    1.7e-12   45.1   0.0    1.1  1  TIGR02012 tigrfam_recA: protein RecA
    1.2e-06   25.6   0.4     0.0005   17.0   0.1    2.4  2  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
      4e-06   23.7   0.1    5.3e-06   23.3   0.1    1.1  1  TIGR00416 sms: DNA repair protein RadA
    4.7e-06   24.3   0.1    1.4e-05   22.7   0.0    1.6  2  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
    1.1e-05   22.9   0.0    1.7e-05   22.3   0.0    1.3  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
    4.7e-05   21.3   0.0    0.00041   18.2   0.0    2.6  3  TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication
     0.0042   14.4   0.1       0.24    8.7   0.0    2.2  2  TIGR03877 thermo_KaiC_1: KaiC domain protein, Ph0284 family
     0.0051   13.5   0.4       0.29    7.7   0.0    2.1  2  TIGR00665 DnaB: replicative DNA helicase
  ------ inclusion threshold ------
      0.027   11.2   0.0      0.058   10.2   0.0    1.4  1  TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family


Domain annotation for each model (and alignments):
>> TIGR02239  recomb_RAD51: DNA repair protein RAD51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.5   0.1    4e-156  1.2e-153       1     316 []      39     352 ..      39     352 .. 0.99

  Alignments for each domain:
  == domain 1    score: 508.5 bits;  conditional E-value: 4e-156
    TIGR02239   1 iekleekgiaaadikklkeaglktvesvayapkkqlleikGlseakadkllaeaaklvplgfttaaelhkkrkevislttGskeldklleGGietGsiteifGefrtGktqlchtlavtcqlpvekgGgeGkalyidtegtfrperllaiaerygldeeevldnvayaraynadhqlklllqaaalmaesryallivdsatalyrtdysGrgelsarqkhlakflrslqrladefgvavvitnqvvaqvdGaaamfaadakkpiGGnilahasttrlslrkGkGeerickiydspclpeaeavfaiaedGigdake 316
                  i++le++gia++d  kl eag+ tves+a+a+ ++l e+kG+se ka+kl + a+klvp gf+taa+  ++r+e+i+++tGs+ ld+ll+GGietGs+teifGefrtGktqlchtl+vtcqlp+++gGgeGka+yidteg frp+rl+aiaeryg+++e vldnv +ara+n+++q++ll+qaaalm+e r+ llivdsatal+rtdy Grgels rq +l++flr+lqrla efg+avv++nqvva+ dG    fa da kpiGGni+ahas trl+lrk +Ge+ric++ydsp++pe+e++fa+ + Gi+dak+
  MMETSP1174-20130828|13739_1  39 ISELEAHGIAHSDTTKLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLRDIAMKLVPCGFQTAAQELQRREEIIMISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGCFRPNRLVAIAERYGVSPEGVLDNVVFARAHNSEQQMELLKQAAALMSEDRFVLLIVDSATALFRTDYVGRGELSERQAQLGQFLRQLQRLASEFGLAVVLSNQVVANPDGM--SFAKDASKPIGGNIIAHASHTRLKLRKSRGENRICQVYDSPSIPESECTFALGNTGIEDAKD 352
                  689********************************************************************************************************************************************************************************************************************************************************7..5**********************************************************986 PP

>> TIGR02238  recomb_DMC1: meiotic recombinase Dmc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.0   0.0  4.6e-130  1.4e-127       1     314 []      39     350 ..      39     350 .. 0.99

  Alignments for each domain:
  == domain 1    score: 423.0 bits;  conditional E-value: 4.6e-130
    TIGR02238   1 idelqkhGinvadikklksagiltvkgvlmttkrellkikGlseakvdkikeaaekiievsfitavellekrkkvlkistGskaldkilGGGiesmsitevfGefrtGktqlshtlcvtaqlpkelggaeGkvayidtegtfrpdrikkiaerfgldaeavldnilyaraytsehqmelleklaaklaeegdfrllivdsilalfrvdysGrGelserqqklaqmlsklsklseefnvavlltnqvqadpGatmlfiadakkpvGGhvlahasatrlllrkGrgdervaklydspdlpeaeasykitegGiada 314
                  i el++hGi  +d +kl +ag++tv+++  ++ r+l ++kG+se k +k++++a k++ ++f ta++ l++r++++ istGs ald++l GGie+ s+te+fGefrtGktql+htlcvt+qlp + gg+eGk +yidteg frp+r+++iaer+g+ +e vldn+++ara++se+qmell+++aa ++e+ +f llivds  alfr dy GrGelserq +l q l +l++l+ ef +av+l+nqv+a+p + m f+ da kp+GG ++ahas trl lrk rg++r++++ydsp +pe+e+++++ + Gi da
  MMETSP1174-20130828|13739_1  39 ISELEAHGIAHSDTTKLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLRDIAMKLVPCGFQTAAQELQRREEIIMISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGCFRPNRLVAIAERYGVSPEGVLDNVVFARAHNSEQQMELLKQAAALMSED-RFVLLIVDSATALFRTDYVGRGELSERQAQLGQFLRQLQRLASEFGLAVVLSNQVVANPDG-MSFAKDASKPIGGNIIAHASHTRLKLRKSRGENRICQVYDSPSIPESECTFALGNTGIEDA 350
                  679*****************************************************************************************************************************************************************************************98.***********************************************************99.**********************************************************996 PP

>> TIGR02236  recomb_radA: DNA repair and recombination protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.0   0.0  4.3e-101   1.3e-98       6     311 .]      45     349 ..      38     349 .. 0.97

  Alignments for each domain:
  == domain 1    score: 328.0 bits;  conditional E-value: 4.3e-101
    TIGR02236   6 pgvGpataeklreaGyetleaiavasakelsevagisestaakiieaareaadlggfetaaevlerrkkvkklttgskeldellGGGietqaitelfGefGsGktqiahqlavnvqlpeekGglegkavyidtentfrperieqlakaeeldeeevlkniyvaraynsnhqlllvekakelikeekepvkllvvdsltahfraeyvGrgelaerqqklnkhladlekladlynvavlvtnqvqakPd..affGdptkaiGGhilghaatfrlylrkskedkriaklvdsPhlpegeavfritekGlkd 311
                   g+  + + kl eaG+ t+e+ia as + l+ev+gise++a+k+ + a +++  g f+taa+ l+rr+++  ++tgs++ldell GGiet ++te+fGef +Gktq++h+l+v+ qlp ++Gg egka+yidte+ frp+r+  +a+  ++ +e vl+n+ +ara+ns++q+ l ++a  l++e++    ll+vds ta fr++yvGrgel+erq +l++ l +l++la  +  av+++nqv a+Pd   f  d+ k+iGG+i++ha+  rl lrks+++ ri +++dsP++pe+e+ f++ ++G++d
  MMETSP1174-20130828|13739_1  45 HGIAHSDTTKLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLRDIAMKLVPCG-FQTAAQELQRREEIIMISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGCFRPNRLVAIAERYGVSPEGVLDNVVFARAHNSEQQMELLKQAAALMSEDR--FVLLIVDSATALFRTDYVGRGELSERQAQLGQFLRQLQRLASEFGLAVVLSNQVVANPDgmSFAKDASKPIGGNIIAHASHTRLKLRKSRGENRICQVYDSPSIPESECTFALGNTGIED 349
                  578888999********************************************77.*******************************************************************************************************************************996..79*********************************************************5447789****************************************************97 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   5.1e-39   1.6e-36       1     210 []     123     348 ..     123     348 .. 0.89

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 5.1e-39
    TIGR02237   1 ldellgGgvergiitqiyGpggsGKtnialilaveaa...ekg...kkvvyiDtEG.lsleRlkqiaedr...fekvlsklivfevfdldeqekaiqkaskliekekadlvvvDsltalyRleksddr..islklelarqlslLlslArkkdlavvitnqvyedvdnd.....tlrplggtlleylskvilrleklergeRkavlekHrsrkeGesvkfrivddGie 210
                  ldell+Gg+e+g +t+i+G++ +GKt+++ +l v+ +   ++g    k++yiDtEG + ++Rl +iae     +e vl++++  ++++ ++q + +++a+ l++++++ l++vDs+tal+R +  +     +++++l++ l  L++lA  + lavv+ nqv  + d+        +p+gg++++++s + l+l k+  ++R   +    s +e ++++f + + Gie
  MMETSP1174-20130828|13739_1 123 LDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCQlplDQGggeGKAMYIDTEGcFRPNRLVAIAERYgvsPEGVLDNVVFARAHNSEQQMELLKQAAALMSEDRFVLLIVDSATALFRTDYVGRGelSERQAQLGQFLRQLQRLASEFGLAVVLSNQVVANPDGMsfakdASKPIGGNIIAHASHTRLKLRKSRGENRICQVYDSPSIPE-SECTFALGNTGIE 348
                  79**************************98888775422234322246*******************998888*************************************************97665446999*****************************98775445544899********************65899999999999999.8899999999986 PP

>> TIGR02012  tigrfam_recA: protein RecA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   5.5e-15   1.7e-12      28     224 ..     108     318 ..      86     326 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 5.5e-15
    TIGR02012  28 kkveevevistGslaldlalGvGGlpkGriieiyGpessGkttlalhviaeaq...kag...gvaafidaehaldpv....yakklgvd....idellvsqpdtGeqaleivet...lvrsgavdiivvdsvaalvpkaei.eGemgdskvGlqarlmsqalrkltgalsksntvlifinqirek.iGvmfGnpett.tGGkalkfyasvrldirri 224
                  ++ ee+ +istGs ald  l  GG+  G ++ei+G   +Gkt l+  +   +q    +g   g a +id+e  + p+     a++ gv     +d+++ ++  + eq +e++++   l+      +++vds +al   + +  Ge+++ +    a+ + q lr+l+   s+   ++++ nq+     G++f +  +   GG+ +   +  rl++r+ 
  MMETSP1174-20130828|13739_1 108 QRREEIIMISTGSSALDELLQ-GGIETGSLTEIFGEFRTGKTQLCHTLCVTCQlplDQGggeGKAMYIDTEGCFRPNrlvaIAERYGVSpegvLDNVVFARAHNSEQQMELLKQaaaLMSEDRFVLLIVDSATALFRTDYVgRGELSERQ----AQ-LGQFLRQLQRLASEFGLAVVLSNQVVANpDGMSFAKDASKpIGGNIIAHASHTRLKLRKS 318
                  4678899**********9887.**********************9888888874442332235899********98633336899999755557999***********99976522266677778999********99988458998875....54.4799********************875527999*9876551699*************996 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.6e-06    0.0005     124     219 ..      62     159 ..      43     232 .. 0.80
   2 !    6.6   0.0    0.0022      0.69     305     352 ..     229     282 ..     200     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
    TIGR03600 124 kaeekveeaqaalleltgksdgqedelvtls.evledvvrslekrfekkgelaGlstGlssLDrltn.GLvkgdlivigaRPsmGKTtlalniaenva 219
                  ++e++ ++    l e+ g s+g+ ++l+ ++  ++   ++ + + ++++ e+  +stG s LD+l++ G++ g+l  i +   +GKT l   + + + 
  MMETSP1174-20130828|13739_1  62 TVESIAHASLRKLQEVKGISEGKAQKLRDIAmKLVPCGFQTAAQELQRREEIIMISTGSSALDELLQgGIETGSLTEIFGEFRTGKTQLCHTLCVTCQ 159
                  6788888888889999999999999998876256667799**************************989********************998887765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0022
    TIGR03600 305 gldlivvDylqlmaas......ekrdrneelgeisrelKalAkELdvpvvvlaQ 352
                  +  l++vD  + + ++      e  +r+++lg+  r+l  lA E + +vv+  Q
  MMETSP1174-20130828|13739_1 229 RFVLLIVDSATALFRTdyvgrgELSERQAQLGQFLRQLQRLASEFGLAVVLSNQ 282
                  456777787766655557776677899***********************9877 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.7e-08   5.3e-06      33     188 ..      74     247 ..      59     290 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.7e-08
    TIGR00416  33 lvevrlkaslkaqkneraslkkgeaqaakaltlseieleeeprfssglseldrvlGGGivkGsliliGGdPGiGkstll..lqvaaqlakns....kkvlyvsgeeslqqvklr..asrlglved........elkllsetnleqilae...ieelkpkvvvidsiqtlyladis 188
                  l+ev+ ++  kaqk +  ++k      + a +    ++ee + +s+g s ld +l GGi  Gsl  i G+   Gk+ l   l v++ql  ++     k++y+ +e   +  +l   a+r g+  +             se ++e ++++   + e +  ++++ds  +l+ +d  
  MMETSP1174-20130828|13739_1  74 LQEVKGISEGKAQKLRDIAMKLVPCGFQTAAQ-ELQRREEIIMISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLChtLCVTCQLPLDQgggeGKAMYIDTEGCFRPNRLVaiAERYGVSPEgvldnvvfARAHNSEQQMELLKQAaalMSEDRFVLLIVDSATALFRTDYV 247
                  56666666777777777666655554433322.2236789999********************************99954488999997654222279********998776652268999776667765555444457888877765511145667788999**9999998864 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.4e-08   1.4e-05       3      62 ..     116     181 ..     114     206 .. 0.74
   2 ?   -2.1   0.0       1.7   5.3e+02     110     135 ..     216     242 ..     206     249 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.4e-08
    TIGR03881   3 lstGveeldklleGGiPrGffvavvGePGvGktilclhfiakG...lreg...dkviyvtteesre 62 
                  +stG ++ld+ll+GGi  G+++ + Ge  +Gkt lc  + ++    l +g    k++y+ te  ++
  MMETSP1174-20130828|13739_1 116 ISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCqlpLDQGggeGKAMYIDTEGCFR 181
                  799********************************9877665422244432223678888887765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.7
    TIGR03881 110 ekvieakkllgvsk.arlvidsmsafw 135
                  e +++a  l++  + + l++ds +a++
  MMETSP1174-20130828|13739_1 216 ELLKQAAALMSEDRfVLLIVDSATALF 242
                  455556555555555668899999998 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.4e-08   1.7e-05       3     141 ..     121     267 ..     119     285 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.4e-08
    TIGR03880   3 eGLDellgGGliegsvivviGeaGtGkttlslqflyeG...LknG..e.kalyislee..reeeilgsakskgwdleeyldkslaivkLdpeelktalerlknelpelikelgasRvvvdsis.lletlfdde...aeRrtelfeflesLk 141
                    LDell+GG+  gs++ + Ge  tGkt+l     +     L +G  e ka+yi  e   r ++++  a+ +g+  e  ld+   +v   +++ ++ +e lk+  ++l++e     ++vds + l+ t +      +eR+ +l +fl++L+
  MMETSP1174-20130828|13739_1 121 SALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCqlpLDQGggEgKAMYIDTEGcfRPNRLVAIAERYGVSPEGVLDN---VVFARAHNSEQQMELLKQ-AAALMSEDRFVLLIVDSATaLFRTDYVGRgelSERQAQLGQFLRQLQ 267
                  579***************************9888765432366653324899999986447789999999999999999999...444455555555555554.56677777777788887651456655544111466777777766665 PP

>> TIGR01954  nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.1   6.7e+02      11      28 ..      30      47 ..      30      49 .. 0.83
   2 !   18.2   0.0   1.3e-06   0.00041       8      46 ..      54      92 ..      52      96 .. 0.93
   3 ?    0.3   0.0      0.52   1.6e+02       4      17 ..      90     103 ..      89     105 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.1
    TIGR01954 11 eeGfstvEdlAyvsvdEL 28
                 eeG+ +   +++++++ +
  MMETSP1174-20130828|13739_1 30 EEGIQSYRHISELEAHGI 47
                 799999999999998866 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.3e-06
    TIGR01954  8 lLveeGfstvEdlAyvsvdELlsIegldEetAkeLilrA 46
                 +L e+Gf tvE +A +s+  L +++g  E  A++L+  A
  MMETSP1174-20130828|13739_1 54 KLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLRDIA 92
                 6889*******************************9766 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.52
    TIGR01954   4 eiaqlLveeGfstv 17 
                  +ia +Lv  Gf t 
  MMETSP1174-20130828|13739_1  90 DIAMKLVPCGFQTA 103
                  89*********995 PP

>> TIGR03877  thermo_KaiC_1: KaiC domain protein, Ph0284 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00077      0.24       4      41 ..     116     153 ..     113     166 .. 0.90
   2 ?    3.7   0.0     0.025         8     104     177 ..     203     289 ..     184     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00077
    TIGR03877   4 vktgipgldeilnggipernvvllsggpgtgksilsqq 41 
                  ++tg   lde+l+ggi    +  + g   tgk+ l++ 
  MMETSP1174-20130828|13739_1 116 ISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHT 153
                  789999***************************99875 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.025
    TIGR03877 104 yvvkdvddvrelidvlkeaikdieakrvv...idsvttl....yltkpalar......sivlqlkrvlsglgvtalfvsqvsvaerg 177
                   v    ++ ++ ++ lk+a   ++++r v   +ds t+l    y+ +  l+       + + ql+r+ s +g + ++ +qv ++  g
  MMETSP1174-20130828|13739_1 203 VVFARAHNSEQQMELLKQAAALMSEDRFVlliVDSATALfrtdYVGRGELSErqaqlgQFLRQLQRLASEFGLAVVLSNQVVANPDG 289
                  566667777888899999999999998653337999988333345555554311111146779999999999999999999887666 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00092      0.29     134     216 ..      72     155 ..      36     163 .. 0.78
   2 ?    4.0   0.1     0.012       3.8     291     351 ..     215     279 ..     200     286 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00092
    TIGR00665 134 eaeqklfevtqerkqkglvsisevlkntfeeleelkekksevtGiptgfydLDklts.GlqrsdLiivAgRPsmGKtafalnia 216
                  +  q++  +++ + qk    + +++   f++  +  ++++e+  i+tg + LD+l++ G++ + L  + g    GKt ++  ++
  MMETSP1174-20130828|13739_1  72 RKLQEVKGISEGKAQKLRDIAMKLVPCGFQTAAQELQRREEIIMISTGSSALDELLQgGIETGSLTEIFGEFRTGKTQLCHTLC 155
                  4445666666666666555566666677999999999999**************997369999***999999999999997776 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
    TIGR00665 291 telrskarrLkaekgelglvviDYLq.Lmegsg....sednRvqelskisrsLKgLArelnvPviA 351
                  +el ++a  L +e+    l+++D    L +++     + ++R+ +l++  r+L  LA e+   v+ 
  MMETSP1174-20130828|13739_1 215 MELLKQAAALMSEDR-FVLLIVDSATaLFRTDYvgrgELSERQAQLGQFLRQLQRLASEFGLAVVL 279
                  566666777777666.6666666544144433333334569*******************999985 PP

>> TIGR03491  TIGR03491: putative RecB family nuclease, TM0106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018     0.058     210     262 ..      35      89 ..      27      99 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
    TIGR03491 210 eekhLslva..GvtssraelLqelgietleeLaaadeeeleklkeqekevaeqlv 262
                  +  h+s+++  G+++s  + L e+g  t+e+ a+a+ ++l+++k + +++a++l 
  MMETSP1174-20130828|13739_1  35 SYRHISELEahGIAHSDTTKLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLR 89 
                  55688877444*************************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.55
# Mc/sec: 847.13
//
Query:       MMETSP1174-20130828|13740_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 985.20
//
Query:       MMETSP1174-20130828|13745_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   11.6   0.0       0.03   10.2   0.0    2.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.3e-06      0.03      64     157 ..      37     132 ..      16     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.3e-06
    TIGR00870  64 ieneneelteLllkke.....egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivk.lLlekgasv 157
                  + +   el+ Lll +      ++  G +++h ++     +v+a+  l+++ a +   ++ +   ++      g+t+l+ A++    ++v+ +L ++ asv
  MMETSP1174-20130828|13745_1  37 SSSARAELVRLLLGNGasldaRAGNGSTAMHWAAG--AGNVDALDILMEAGADG--MVHSYTWGRQVFGKGSGQTPLHWAAESGHAQVVThILHANAASV 132
                  667788999999999999999999999****9999..88898888777777744..4556888888888999**************99962555666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 766.39
//
Query:       MMETSP1174-20130828|13744_1  [L=1247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   17.5   0.7    0.00056   17.5   0.5    7.6  8  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.6     0.078   3.2e+02       6      16 ..       7      17 ..       4      17 .. 0.88
   2 !    8.8   1.0   8.1e-05      0.33       6      22 ..      60      75 ..      58      79 .. 0.92
   3 !    5.1   0.5    0.0011       4.7       7      20 ..      87     100 ..      86     103 .. 0.94
   4 ?   -2.8   0.0      0.37   1.5e+03       7      14 ..     165     172 ..     164     172 .. 0.87
   5 !   17.5   0.5   1.4e-07   0.00056       5      23 ..     302     320 ..     301     325 .. 0.87
   6 ?    1.0   0.2     0.023        93       6      20 ..     329     342 ..     327     345 .. 0.87
   7 !    2.2   0.0    0.0099        41       6      19 ..     354     367 ..     354     367 .. 0.91
   8 ?   -3.4   0.0       0.6   2.5e+03       4      14 ..     378     388 ..     376     389 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.078
    TIGR01376  6 lFsnNsakgsG 16
                 +F++N a+++G
  MMETSP1174-20130828|13744_1  7 TFNENFAATGG 17
                 8*******776 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 8.1e-05
    TIGR01376  6 lFsnNsakgsGGAIyat 22
                 +F++Nsa+ +GG I+++
  MMETSP1174-20130828|13744_1 60 TFNGNSAE-YGGVISSS 75
                 7*******.*****997 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0011
    TIGR01376   7 FsnNsakgsGGAIy 20 
                  F++N a g+GG +y
  MMETSP1174-20130828|13744_1  87 FNSNNASGFGGVLY 100
                  9**********988 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 0.37
    TIGR01376   7 FsnNsakg 14 
                  F +N+a+g
  MMETSP1174-20130828|13744_1 165 FDSNYATG 172
                  99****85 PP

  == domain 5    score: 17.5 bits;  conditional E-value: 1.4e-07
    TIGR01376   5 ilFsnNsakgsGGAIyatg 23 
                  ++F +Nsa g+GGAI a++
  MMETSP1174-20130828|13744_1 302 TTFKSNSALGHGGAIRASS 320
                  89***************85 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.023
    TIGR01376   6 lFsnNsakgsGGAIy 20 
                  +F+ Nsa  +GG ++
  MMETSP1174-20130828|13744_1 329 TFNLNSAD-NGGVLS 342
                  7999****.999876 PP

  == domain 7    score: 2.2 bits;  conditional E-value: 0.0099
    TIGR01376   6 lFsnNsakgsGGAI 19 
                  +F   +a  +GGAI
  MMETSP1174-20130828|13744_1 354 TFQHSQASDYGGAI 367
                  688999*******9 PP

  == domain 8    score: -3.4 bits;  conditional E-value: 0.6
    TIGR01376   4 tilFsnNsakg 14 
                   ++F  Nsa +
  MMETSP1174-20130828|13744_1 378 ATTFKVNSAIH 388
                  689999*9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.17s 00:00:00.93 Elapsed: 00:00:00.64
# Mc/sec: 2571.73
//
Query:       MMETSP1174-20130828|13742_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.1   0.1     0.0067   14.0   0.0    1.5  1  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.6e-06    0.0067     113     172 ..     423     477 ..     410     483 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.6e-06
    TIGR00624 113 lwsfvndkpqvrqrkadseipsvsseskalskelkkrgfrfvgptiayalmqatglvddh 172
                    +f+  +p+++ + + seip vs++s a+ k+ kk   +f+    ay +   t  v d 
  MMETSP1174-20130828|13742_1 423 ETAFA--DPEITCMLVASEIPFVSQDSPAMKKAAKKI--KFLEGHWAYKYEECT-WVYDT 477
                  55677..8***************************98..999889999887776.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 1792.60
//
Query:       MMETSP1174-20130828|13748_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|13750_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   14.3   0.0       0.78    6.8   0.0    2.3  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0006       2.5      64      88 ..       3      27 ..       1      33 [. 0.87
   2 !    6.8   0.0   0.00019      0.78     170     197 ..     122     149 ..     114     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0006
    TIGR01963 64 eiadlieavaaefgsldiLvnnAGi 88
                 +i+d  + + ++ ++ldiLv nAG+
  MMETSP1174-20130828|13750_1  3 SIRDGTASLLKAHSRLDILVLNAGV 27
                 678888899999************9 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00019
    TIGR01963 170 etgitanaicPgyvrtpLvekqiadqak 197
                  e+ +++ ++ Pg+  t +v+ +i+  a+
  MMETSP1174-20130828|13750_1 122 EQAVRCVSVTPGFALTNIVSGKIPAPAR 149
                  6789*******************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.48
# Mc/sec: 602.20
//
Query:       MMETSP1174-20130828|13753_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.53
# Mc/sec: 779.48
//
Query:       MMETSP1174-20130828|13760_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 345.69
//
Query:       MMETSP1174-20130828|13761_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    9.3   6.4       0.27    8.6   4.4    1.2  1  TIGR00496 frr: ribosome recycling factor


Domain annotation for each model (and alignments):
>> TIGR00496  frr: ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.4   6.7e-05      0.27     111     172 ..      67     131 ..      60     132 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 6.7e-05
    TIGR00496 111 iaEeakvavRnvRrDandk..vkklekdkeisEdeekklkeeiqkitde.yikkideilkdkeke 172
                  + E++++ +Rn+ rD  d+  v   e d++ ++++++ +  e+ k t++  ++++++i++dke++
  MMETSP1174-20130828|13761_1  67 LREKQRQLIRNMDRDEEDNawVLSREYDDDFDDQFDNVVSFEVCKETEQeNTRRMNSIIRDKEAD 131
                  5699***********988733667788999999999********9997626899********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|13764_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-28   95.1   0.0    8.2e-28   95.0   0.0    1.0  1  TIGR00066 g_glut_trans: gamma-glutamyltransferase


Domain annotation for each model (and alignments):
>> TIGR00066  g_glut_trans: gamma-glutamyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0     2e-31   8.2e-28     352     504 ..       2     162 ..       1     181 [. 0.88

  Alignments for each domain:
  == domain 1    score: 95.0 bits;  conditional E-value: 2e-31
    TIGR00066 352 DreGNavsltttinlefGsgvvipdtGillnNelddfslkpkganavepnkRplssmaPtivlkee.kpklvvGspGgsriittvlqvivrtldYglelaeavsepRihhqllp..........delrlEkfgvakdvlsklkdmGhkvtlkevqdmgsvnaik 504
                  D+eGN vsl+++++ efGsg v+p+ G+ l+ +   f+l++++an  +p kRp+++++P   ++++ +p+   G  Gg  +++ ++q++v+++d+g+ ++ea ++ R++h +              l+lE  g+ + v ++l + Gh +  k +  +g  +a++
  MMETSP1174-20130828|13764_1   2 DSEGNMVSLIQSLYNEFGSGLVVPGLGFALQDRGALFALEDGHANIYQPLKRPFQTIMPGFTFNDQgHPWTSFGVMGGFMQPQGQVQILVNMIDFGMGVQEAGDAARYYHYQDNeptgatmedgGILELEG-GICPSVENELLNRGHTIFRKAN--KGGYQALE 162
                  9**************************************************************9988****************************************998665445888888656699999.**************77665555..78888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 530.76
//
Query:       MMETSP1174-20130828|13754_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 639.95
//
Query:       MMETSP1174-20130828|13768_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|13766_1  [L=1038]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.63
# Mc/sec: 2174.68
//
Query:       MMETSP1174-20130828|13767_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.49
# Mc/sec: 1608.11
//
Query:       MMETSP1174-20130828|13769_1  [L=989]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-123  410.0   0.0    3.8e-61  205.0   0.0    2.3  2  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    9.6e-76  253.1   0.0    2.5e-41  139.6   0.0    2.1  2  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
      8e-06   23.0   0.0    1.5e-05   22.1   0.0    1.4  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    0.00093   16.1   0.0      0.022   11.5   0.0    2.1  2  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
     0.0078   13.0   0.0      0.019   11.7   0.0    1.6  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
  ------ inclusion threshold ------
      0.057   10.1   0.0      0.092    9.5   0.0    1.2  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6   0.0     3e-63     2e-60      18     257 ..      84     351 ..      71     356 .. 0.89
   2 !  205.0   0.0   5.6e-64   3.8e-61     246     454 ..     433     653 ..     380     654 .. 0.88

  Alignments for each domain:
  == domain 1    score: 202.6 bits;  conditional E-value: 3e-63
    TIGR02400  18 leasaGGLavalkgvlkatggvWvgwsGkeveeee.ekklkkelegkitlvpvdLseeevdeyYegfsNsvLWPlfHyr.....ldlaeyerkefeaYkrvNrlfaekvaellkegdvvwvhDYhllllpamlrelgvenvkiGfFlHiPfpsseilrllPvreellegllaadlvGfqteedaenflsavsrllgletlenkveske.........................rtvrveafpigidvdkfaeaakkpevkkeiaelreklk 257
                  l+    GL +a+ ++  +t  +W+gw+  +    + + +l++el  +  +vpv L+++ ++ y++g +N+vLWP++H+       d  + ++++++aY ++N++fa++v +++++gdvv++hDYhl+l+p++lr+++++ ++iG+FlH+Pfp + ++r+lPvr++lleg+laad+vGf+t+++a+nf++avs+++g + + +k+ s++                         +  rve  p+gid+d+f+ea+++pev++++a++++ l+
  MMETSP1174-20130828|13769_1  84 LSRVRTGLKTAMDSLELNT-MLWIGWADLNDATPSeAVALRTEL-ASRDCVPVMLQSRIFEPYFDGMCNDVLWPILHSAnagigADSLHGQEAQWHAYVEANKAFAAEVLKTYRSGDVVFIHDYHLMLVPQILRAAEPS-MRIGWFLHVPFPVESLWRTLPVRRQLLEGVLAADVVGFHTSRYARNFAAAVSSITGFDPIYEKEGSSSsaaaaassssssassghkddytigpHGCRVEICPMGIDPDRFTEALTSPEVSETLAKTENWLR 351
                  677778999**99987766.8*******9999988455566666.5566****************************9955544455556677**********************************************.8*******************************************************9887776666556789********************999***************************999987665 PP

  == domain 2    score: 205.0 bits;  conditional E-value: 5.6e-64
    TIGR02400 246 kkeiaelrekl..kgekvilgvdRLDysKGlperlkafeklLeenpewrgkvvlvqiavpsRedveeYqelreeveelvgringef....geldwvpirylnksvdreeLvalyraadvalvtplrDGmNLVakEyvaaq..edkk.GvLiLSefaGAaeeLk...eallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeL 454
                  k++++e  e +   +++++lgvdRLDy+KGlpe+l+afe +Le++pe rg+ +lvq+avp+R++ ++Yq+++++v ++v ring++    g+l   p++y+++s++++e+valy++adv+l+t+  DG+NLVa Ey+a+q  + ++ G LiLSef+G ae L+   +a+++np+d+++v++ai+ +l+m +eer   ++a lk + +++++ W ++  ++L
  MMETSP1174-20130828|13769_1 433 KESVKEEGEPAviPNRRIMLGVDRLDYVKGLPEKLEAFELFLERYPEERGRTTLVQVAVPTRTRSPRYQKVTDRVRQIVARINGRYwtseGSLSTPPVVYIERSIPFTEIVALYHLADVMLITSFSDGLNLVAFEYIASQigSSERpGGLILSEFTGTAEILAetgGAVIINPYDVSAVTDAIRATLNMGNEERIDLHKAGLKCVYNNTASGWVKSIFTSL 653
                  3444433332224899*********************************************************************954445566789******************************************95533446*************9985557**********************************************99876665 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   1.4e-35   9.5e-33      41     277 ..     102     345 ..      77     355 .. 0.81
   2 !  139.6   0.0   3.6e-44   2.5e-41     283     479 ..     446     652 ..     416     659 .. 0.87

  Alignments for each domain:
  == domain 1    score: 111.3 bits;  conditional E-value: 1.4e-35
    TIGR02398  41 dgtwvawkevd.eeeqevfdakmtvpaeeklvvarialskeqvksfyeitskeafwpilhtfpe.....rfqvdeadwevfkkvnkafaeaaaeeaaegatvwvhdynlwlvpgyirqkrpdlkiaffhhtpfpsadvfnilpwreqivesllccdlvGfhipryvenfvaaarslvkvkivskvsvdekfiavGtalaeee....vttaldtkdrlvkldaspvGtdperireavaaasveeriek 277
                     w+ w++++     e+  +++   ++     + + l +   + +++ +  +++wpilh+         ++ +ea+w+ + + nkafa    +    g +v++hdy l lvp+ +r   p ++i +f h pfp   ++  lp r+q++e +l+ d+vGfh  ry +nf+aa +s+++ +   + +      a  ++ + +        +   + +  +++  p+G+dp+r  ea+++++v e++ k
  MMETSP1174-20130828|13769_1 102 TMLWIGWADLNdATPSEAVALRTELASR---DCVPVMLQSRIFEPYFDGMCNDVLWPILHSANAgigadSLHGQEAQWHAYVEANKAFAAEVLKTYRSGDVVFIHDYHLMLVPQILRAAEPSMRIGWFLHVPFPVESLWRTLPVRRQLLEGVLAADVVGFHTSRYARNFAAAVSSITGFDPIYEKEGSSSSAAAAASSSSSSassgHKDDYTIGPHGCRVEICPMGIDPDRFTEALTSPEVSETLAK 345
                  5569***999835566777777777666...4567889999999*****************976111114556799*****************************************************************************************************99866555544433332222222220000233344567889999********************998876 PP

  == domain 2    score: 139.6 bits;  conditional E-value: 3.6e-44
    TIGR02398 283 agrklilsaervdytkGikellvayerllerreellgkvvlvvaavkaasgmkiyeelqseieelvGrinGrf....arvdwtpvrlftralpyeelvaffaaadvawitplrdGlnlvakeyvaar...glrdGvlvlsefaGaavelk...gavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellae 479
                    r+++l ++r+dy+kG  e+l a+e +ler +e +g+ +lv +av++      y+++  ++ ++v rinGr+      +   pv +  r++p+ e+va +  adv+ it + dGlnlva ey+a++     r G l+lsef+G+a  l    gav+ npy+   +++ai a+l+m +ee+    k   + v +++   w + ++++
  MMETSP1174-20130828|13769_1 446 PNRRIMLGVDRLDYVKGLPEKLEAFELFLERYPEERGRTTLVQVAVPTRTRSPRYQKVTDRVRQIVARINGRYwtseGSLSTPPVVYIERSIPFTEIVALYHLADVMLITSFSDGLNLVAFEYIASQigsSERPGGLILSEFTGTAEILAetgGAVIINPYDVSAVTDAIRATLNMGNEERIDLHKAGLKCVYNNTASGWVKSIFTS 652
                  47899*******************************************************************94433357888******************************************9843345779**********976643338**************************999999999999999999999888876 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.2e-08   1.5e-05     256     354 ..     528     636 ..     500     649 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.2e-08
    TIGR04047 256 igavvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsGv.....P..vvaselaPfteyl.deeeavvadpsdpesladalaaaleeaar..ealaaagkel 354
                  + +v i  +++  e++aL++lAd++ ++s  +G  Lv++E +As +     P  ++ se +   e l ++  av+ +p d++ ++da++a+l+  ++   +l++ag + 
  MMETSP1174-20130828|13769_1 528 PPVVYIERSIPFTEIVALYHLADVMLITSFSDGLNLVAFEYIASQIgsserPggLILSEFTGTAEILaETGGAVIINPYDVSAVTDAIRATLNMGNEerIDLHKAGLKC 636
                  334889999**********************************965333344559999999999999667789999************999886555114556666655 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.3e-05     0.022     203     260 ..     422     481 ..     416     483 .. 0.79
   2 ?    2.1   0.0     0.024        17     293     322 ..     541     570 ..     531     603 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.3e-05
    TIGR04157 203 kdeaillseeerkklrkk..yslkeeekiilfvGRLdeiKgvkalieaFkkvlkkspncr 260
                  +d ++ll +e +++++++    + ++ +i+l v RLd +Kg+ + +eaF+ +l+ +p+ r
  MMETSP1174-20130828|13769_1 422 SDLSNLLPQEVKESVKEEgePAVIPNRRIMLGVDRLDYVKGLPEKLEAFELFLERYPEER 481
                  566666666666666654114577899****************************99865 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.024
    TIGR04157 293 kLyelYqiadvGvlpSlhEqcsyvaiEmlm 322
                  ++  lY++adv ++ S+ +   +va E + 
  MMETSP1174-20130828|13769_1 541 EIVALYHLADVMLITSFSDGLNLVAFEYIA 570
                  6778*********************99775 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.8e-05     0.019     285     343 ..     530     587 ..     423     649 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
    TIGR03449 285 rvrflpPrpkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarvGGlpvava 343
                  +v ++   p +e+v++y+ adv+ + s+s+ + lva+e  as     + r GGl ++  
  MMETSP1174-20130828|13769_1 530 VVYIERSIPFTEIVALYHLADVMLITSFSDGLNLVAFEYIASQIGS-SERPGGLILSEF 587
                  66777788999***************************88875432.334444443333 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00014     0.092     265     338 ..     541     621 ..     537     649 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00014
    TIGR03999 265 eveellslsDllllpsekesFGLaaLeamacgvp.......viasnvgGlpevveegetGflvevgdveemaekalklled 338
                  e+  l+ l+D++l++s ++   L+a e +a ++         i s+  G  e+++e     +++  dv+++++     l+ 
  MMETSP1174-20130828|13769_1 541 EIVALYHLADVMLITSFSDGLNLVAFEYIASQIGsserpggLILSEFTGTAEILAETGGAVIINPYDVSAVTDAIRATLNM 621
                  78899*************************999522222335889999999999998888999999999998877666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.19s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 2664.02
//
Query:       MMETSP1174-20130828|13772_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-20   69.3   0.0    9.8e-20   68.5   0.0    1.4  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    3.1e-14   50.5   0.0    4.1e-14   50.1   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.2e-11   42.0   0.0    1.8e-11   41.5   0.0    1.1  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   7.1e-23   9.8e-20      49     222 ..      89     261 ..      31     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 7.1e-23
    TIGR02160  49 elrrsys.icdavadgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaa.epkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvdda 222
                  ++ r y+ i    ++g + + vk+ + G +s++    +++Gdtl++  P  +f+++ +    +h   va G+GitP+l +++ +l++ e+ +++ lv+an ++++++++ +++ l   +p+rf+++ vl + +  a l  G +     ++l ++l      ++  +cGP ++++ +
  MMETSP1174-20130828|13772_1  89 NVIRPYTpISAPEQKGYLDLLVKVYPEGKMSAHF-GTLKPGDTLDMKGPFLKFKYQASEF--DHIGCVAGGTGITPMLQVIDKILSNpEDTTKVSLVFANVTENDILMRSHIDALACAHPERFTVYYVLDQPPSPAFLWRGGIGYITGAMLKAKLPGPCDQNKILVCGPPGMMNVV 261
                  5667777244445678999************987.57****************9988776..999********************86488999***************************************************99999999**99999999**********9876 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0     3e-17   4.1e-14     233     385 ..     103     262 ..      76     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 3e-17
    TIGR01941 233 a......naeippGkmssyifslkpGdkvtvsGpfGeffvkdtdaelv.figGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaend.nfkyhvalsd.plpednwtGytgfihnvlyenylkdhdapedi.efymcGpplmnaavi 385
                  +       +  p Gkms++  +lkpGd + ++Gpf +f  + ++ + +  ++GG+G++p+   i + l + +   k+s+ +   ++++++ + + d l+  ++  f+ + +l + p p   w G +g+i  ++++ +l   + p d  +  +cGpp m + v 
  MMETSP1174-20130828|13772_1 103 KgyldllVKVYPEGKMSAHFGTLKPGDTLDMKGPFLKFKYQASEFDHIgCVAGGTGITPMLQVIDKILSNPEDTTKVSLVFANVTENDILMRSHIDALACAHPeRFTVYYVLDQpPSPAFLWRGGIGYITGAMLKAKL---PGPCDQnKILVCGPPGMMNVVS 262
                  2444443334689***************************999988774799*********999999999****************************9877625876666665279****************99877...56666416889***98887765 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.3e-14   1.8e-11      48     204 ..      96     260 ..      91     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.3e-14
    TIGR02911  48 pisvseigegyvdltirkv..gkvtdevfelkegdklflrgpygngfdvdnykdkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewk....ekinlvltldeaeedd...kykvglvtkyiaelklkd.ieevqvivvgppimlkf 204
                  pis  e  +gy+dl+++    gk++ +  +lk gd+l ++gp+   f+ ++    ++  vaggtg++p+  v++ +  n+++  +++l+    t++dil++ +++       e++ +   ld+  +     ++ +g +t  + + kl    ++ +++v gpp m++ 
  MMETSP1174-20130828|13772_1  96 PISAPE-QKGYLDLLVKVYpeGKMSAHFGTLKPGDTLDMKGPFLK-FKYQASEFDHIGCVAGGTGITPMLQVIDKILSNPEDTTKVSLVFANVTENDILMRSHIDALAcahpERFTVYYVLDQPPSPAflwRGGIGYITGAMLKAKLPGpCDQNKILVCGPPGMMNV 260
                  777665.479****99864449********************975.888888888899********************************************99876511125667777889876653333899***********99753788899999******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 817.21
//
Query:       MMETSP1174-20130828|13773_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1347.89
//
Query:       MMETSP1174-20130828|13774_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|13775_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|13779_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.7   0.3       0.08   10.7   0.2    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   1.9e-05      0.08     189     215 ..     131     157 ..     122     158 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.9e-05
    TIGR03499 189 keedeilekggviaLvGptGvGKTTTl 215
                  + + +  e g vi+LvG t  GKT T+
  MMETSP1174-20130828|13779_1 131 QISHTNYEAGPVILLVGETSTGKTKTI 157
                  55566667777*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.84
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|13780_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|13781_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1174-20130828|13784_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|13782_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:01.95
# Mc/sec: 243.00
//
Query:       MMETSP1174-20130828|13785_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|13783_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-51  172.9   0.0    2.9e-50  169.4   0.0    2.0  1  TIGR02730 carot_isom: carotene isomerase
    1.4e-24   84.5   0.0    6.4e-12   42.7   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    1.2e-22   78.1   0.0    3.6e-12   43.6   0.0    2.5  2  TIGR02734 crtI_fam: phytoene desaturase
    1.9e-07   28.6   1.8    0.00012   19.4   1.5    2.2  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.8e-06   24.6   0.1    4.9e-06   23.8   0.1    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      6e-06   22.9   0.4    8.8e-06   22.4   0.3    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.2e-05   22.0   1.4    2.2e-05   21.2   1.0    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.3e-05   22.1   0.2    1.9e-05   21.5   0.1    1.2  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    2.4e-05   21.5   0.5    3.6e-05   21.0   0.3    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    7.5e-05   19.7   1.1    0.00012   19.0   0.2    1.7  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
    0.00024   16.8   0.2    0.00036   16.2   0.2    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00039   16.9   0.1    0.00089   15.8   0.0    1.6  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0004   17.1   0.3    0.00064   16.4   0.2    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00043   17.3   1.6    0.00053   17.0   0.3    1.7  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0013   15.4   0.6      0.061   10.0   0.1    2.4  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
     0.0019   14.4   0.1      0.003   13.8   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0022   14.8   0.1     0.0039   14.0   0.1    1.3  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0028   14.3   0.1      0.012   12.3   0.1    1.8  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0073   12.5   1.3       0.26    7.4   0.0    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
  ------ inclusion threshold ------
      0.013   11.9   0.1       0.08    9.3   0.1    1.9  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.017   11.5   0.0      0.028   10.8   0.0    1.3  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      0.017   12.1   0.1      0.031   11.2   0.1    1.4  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.017   12.6   2.8      0.026   12.0   1.0    1.9  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
       0.02   10.1   0.2      0.029    9.6   0.1    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.045   10.6   0.1        0.1    9.4   0.1    1.6  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.047   10.5   1.2      0.074    9.8   0.8    1.2  1  TIGR02053 MerA: mercuric reductase
      0.064   10.2   0.4        3.2    4.6   0.0    2.1  2  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
       0.14    8.7   2.3       0.31    7.6   0.3    2.0  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
       0.15    8.5   4.0       0.12    8.9   1.1    1.9  2  TIGR01813 flavo_cyto_c: flavocytochrome c
       0.41    7.2   5.4       0.14    8.8   1.3    1.8  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   2.1e-52   2.9e-50       1     486 [.     114     639 ..     114     644 .. 0.79

  Alignments for each domain:
  == domain 1    score: 169.4 bits;  conditional E-value: 2.1e-52
    TIGR02730   1 ydaivigsgigglvtatqlaakgakvlvlekylipggsagyfer..eg..ykfdvgaslifgfgdkgttnlltralaavgekletipdpvqihyhlpnd...lnvkvdreyekfleelva..kfphekegirkfydecwqvfnclnalellsleepryllkv.......ffkkplaclglvkylpqnvgdiarkyikdpellkfidiecfiwsvvpadltpminagmvlsdrhy.gg..inypkggvgeiaeklvkglekaggkirykarvtkiilend..kavgvkladgekirakr.ivsnatrwdtfgkllk...eenlpkkekkfrkaykksp...sflslhlgvkadl..lpegtechhllledwen.lekeegtifvsiptlldpelapegyhiihtftp..ssledweglsp..kdyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpi.......p.rrklkgllsmpfn..rtaidglycvgdstfpgqglnavafsgfacah 486
                  yd++vigsg+ggl + +  a  g kv v+e+++ pggsa  f r  +g  y f+vg s++ g++   ++n l   l  +ge+l+t +    + y  p++   + v  d+++e+++ e     + p+  e    + +    +  +  a+ l+ l + + +l +        f +p   l l   +     +   + + +  l ++id  c  +   pa+   m    + + +r +  g     p gg  e+a  + + lek  g +  +++v +++ + d  ++vgv+l  g+ ++ak+ +vsnat +dt++ l +   + +lp+  ++++ +  k p   +++ l l + a    l +  +  hl+++dw + l++ +      ip+l dp+++p g h ih++++  +  e we+l +   +yea ke+ a+ l + +e+ +p + +  +++ +g+p +h  fl r+ gtyg         p +  l+ ll++pf   +t +dgl   gds+fpg g  + a sg + a 
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTFSRvhNGgkYSFEVGPSIFEGLSGP-SLNPLRTILDMLGEDLKTET-YGGLGYWTPEGywrFPVGSDQKFEDLVMERCGpvEGPKAMEEWAALRKRLKTLGGSTTAVSLVNLRQDAGMLATtagatpyVFTHPDVFLDLPLTFD-SLHKTVDQCVTNTFLRNYIDTMCI-FCGFPAK-GAMTAHILYILERFFeEGcaFCVPIGGTVEMAYAFQRALEKRDGVLALNTHVQELMYDADqkRCVGVRLKSGKVVKAKKaVVSNATPFDTIKMLPDggdAPELPEGVREWKSTLGKLPrhgAIMHLFLAIDATDldLSHIEDPAHLVVQDWGRsLQDSQNLCSFFIPSLRDPSVCPPGKHCIHVYSSggEPYEPWENLETgsPEYEAYKEERAKCLWEAVERCIPDVRARTEFHIIGSPLAHEAFLRRDRGTYGLAwaagtsaPyAGLLQNLLPFPFPnlKTPVDGLLRCGDSCFPGIGTPSAAASGAIAAN 639
                  9*****************************************995533459************975.68999999********9865.6789*****9832245777999999999887522457777777777777777777788888988877665554312222226788888877754443.34555678999999*******994.4456665.4455555666777763351145699*******************************87651168************975489**********9975221567899999****99999832245666677766441356667899*******75388889888999********************9732569*****9752269*************************************************96521111113234578899999953479*************************99886 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   4.4e-13   6.1e-11       3      60 ..     115     176 ..     113     191 .. 0.90
   2 !   42.7   0.0   4.7e-14   6.4e-12     238     485 ..     362     638 ..     354     645 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 4.4e-13
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkr....rgfifdvGatqvaGl 60 
                  +vvviG+G++Gl+++al a+ G +v ++e++ ++GG a tf r    +++ f+vG     Gl
  MMETSP1174-20130828|13783_1 115 DVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTFSRvhngGKYSFEVGPSIFEGL 176
                  79***************************************99655568******8877776 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 4.7e-14
    TIGR02733 238 lvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelle....eaals...kgyrkrlkklpepsGalvlylavkkaalpvdc...pphlqflsdeqG..........slfvsvskegdgraPkGeatl..iassftdvdeWsslee..edytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivG.....Glgqr....lstfGpfglas.rtPlkglWlvGdsiyPGeGtaGvsysalavv 485
                  ++ al+k++g l l+ +v+++  + ++++ + v+ +  k +++   + vv n ++ + +++l+      +l+   ++++  l klp+    + l+la+++++l  +    p+hl    ++ G          s+f+  s  +    P G++ +   +s     ++W +le+   +y+a k+e +k + e++e+ +   +++ + + ++ P + e +  r++G  G     G +      l+++ pf + + +tP++gl  +Gds +PG Gt   + s   ++
  MMETSP1174-20130828|13783_1 362 FQRALEKRDGVLALNTHVQELMYDADQKRCVGVRLKSGKVVKA--KKAVVSNATPFDTIKMLPdggdAPELPegvREWKSTLGKLPRHGAIMHLFLAIDATDLDLSHiedPAHLV--VQDWGrslqdsqnlcSFFIP-SLRDPSVCPPGKHCIhvYSSGGEPYEPWENLETgsPEYEAYKEERAKCLWEAVERCIPDVRARTEFHIIGSPLAHEAFLRRDRGTYGlawaaGTSAPyaglLQNLLPFPFPNlKTPVDGLLRCGDSCFPGIGTPSAAASGAIAA 638
                  6789*******************99999998888773333333..3458999999999999985554333331115688899****9988899********99864322266664..44444557777779898986.66666777877665421667778899***99862269********************99999999999****************987544333322111214566789997769*******************98887766555 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   1.2e-10   1.6e-08       1      54 [.     116     173 ..     116     198 .. 0.87
   2 !   43.6   0.0   2.6e-14   3.6e-12     159     489 ..     294     642 ..     282     656 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 1.2e-10
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed...G.frfDtGPtvi 54 
                  +vViG+G+gGLA+ ++ a  G +v v+e + kpGG a ++++    G + f +GP+++
  MMETSP1174-20130828|13783_1 116 VVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTFSRVhngGkYSFEVGPSIF 173
                  79**********************************987654333357********86 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 2.6e-14
    TIGR02734 159 alrsldkkvarfikderLrqilsfhalfvggnPf...kassiYalisaleleaGVwfprGGtsalvealaklaedlggelrlnaeveeieteg..erataveledgerlea.davvsnaDlvhtykkllreeer.....rrksekklskkrlslslvv.lyfGlkGvegelpqlaHHtllfgerykelieeifkkselaedfslylvsptvtdpslAPegkeslyvLvPvphlga..aadvdwskegerlrdr...ilaeleeralpdlrerivverlltPadfedeln........aal.GsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvaklil 489
                  ++ sl+k+v++ + +  Lr+ +    +f g       +a  +Y+l   +e       p+GGt +++ a +++ e+ +g l ln++v+e+  +   +r  +v+l++g+ ++a +avvsna   +t k l    ++     + ++ k+   k +  ++++ l++ ++ ++  l++++    l+ +++ + +++  +  +        +  p+  dps+ P+gk+  +v +   +     ++  ++s e e ++++    l e  er +pd+r+r +++ + +P  +e+ l         a++ G+    +  l+   +f   n +  vd+l   G    PG+G P+   S+ ++a+ ++
  MMETSP1174-20130828|13783_1 294 TFDSLHKTVDQCVTNTFLRNYIDTMCIFCGFPAKgamTAHILYILERFFEEGCAFCVPIGGTVEMAYAFQRALEKRDGVLALNTHVQELMYDAdqKRCVGVRLKSGKVVKAkKAVVSNATPFDTIKMLPDGGDApelpeGVREWKSTLGKLPRHGAIMhLFLAIDATDLDLSHIEDPAHLVVQDWGRSLQDSQNLCS--------FFIPSLRDPSVCPPGKHCIHVYSSGGEPYEpwENLETGSPEYEAYKEErakCLWEAVERCIPDVRARTEFHIIGSPLAHEAFLRrdrgtyglAWAaGTSAPYAGLLQNLLPFPFPNLKTPVDGLLRCGDSCFPGIGTPSAAASGAIAANTLH 642
                  689**************************9865411144556777777777777777*******************************98776558999*********998459**********9999654443000113333344444556666666356688888888888888888889999999886433322........456899***************985442222345666777777777665111455556677****************98877554111111123331333334555666678999*******************************9999887 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   1.5   8.7e-07   0.00012       1      42 [.     116     157 ..     116     163 .. 0.94
   2 !    6.5   0.0    0.0069      0.94     214     272 ..     362     424 ..     339     459 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 8.7e-07
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfed 42 
                  vvv+G G+ GLa+++  a+ G +v ++E+  + GG a  f +
  MMETSP1174-20130828|13783_1 116 VVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTFSR 157
                  89***********************************99976 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0069
    TIGR03467 214 aarylesrggevrlgtrvreleasaggiralve..aaeetlaadavvl..Avpperaasllpe 272
                  + r+le+r g ++l+t+v+el ++a++ r       +++ ++a+++v+  A+p++ ++ l ++
  MMETSP1174-20130828|13783_1 362 FQRALEKRDGVLALNTHVQELMYDADQKRCVGVrlKSGKVVKAKKAVVsnATPFDTIKMLPDG 424
                  6789********************999886433344555555555554457888877766555 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   3.6e-08   4.9e-06      21      60 ..     113     152 ..     108     160 .. 0.93

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.6e-08
    TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGs 60 
                  e Dv+++G+G  GL+++   a+ g kv+v+e+++ +GG  
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSA 152
                  68***********************************975 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   6.4e-08   8.8e-06       2      36 ..     113     147 ..     112     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 6.4e-08
    TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeedlv 36 
                  +yd+ viG+G GG++++ l+a++G+kva+ e ++ 
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIESHIK 147
                  69*****************************9864 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.0   1.6e-07   2.2e-05       1      37 [.     113     150 ..     113     153 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.6e-07
    TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37 
                  eydvvviG+G gG  +   +a+ g kva++e   k GG
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIEShIKPGG 150
                  69*****************************9567777 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.4e-07   1.9e-05       2      40 ..     113     152 ..     112     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.4e-07
    TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllld.fvkptpqG 40 
                  +yd++viG+G GGla+   +a++g+kv++++ ++kp    
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIEsHIKPGGSA 152
                  7****************************97357887655 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   2.6e-07   3.6e-05       2      35 ..     113     146 ..     112     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.6e-07
    TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekk 35 
                  eyd++viG G GG+a    +aeyG+k++++e++ 
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIESHI 146
                  7******************************984 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   8.8e-07   0.00012       1      38 [.     114     155 ..     114     158 .. 0.82
   2 ?   -1.9   0.0         2   2.7e+02     265     318 ..     358     411 ..     355     416 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.8e-07
    TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiiaa....GqsalhF 38 
                  +Dv++iG+G+ Gl+c+   ae G k+a+i +    G sa  F
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIEShikpGGSAHTF 155
                  9***************************97533335566555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2
    TIGR03378 265 leealkrrFeklGGvllkgdevlraeleenrvariftrnhedipleakqfvlas 318
                  +  a++r+ ek  Gvl    +v++  ++ ++ +++  r ++   ++ak++v++ 
  MMETSP1174-20130828|13783_1 358 MAYAFQRALEKRDGVLALNTHVQELMYDADQKRCVGVRLKSGKVVKAKKAVVSN 411
                  56688999999999999999***************************9999865 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   2.6e-06   0.00036     169     210 ..     114     155 ..     105     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.6e-06
    TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllse 210
                   Dv+v+G+G  GLa     a+ G +v +++ + + GGs ++ 
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTF 155
                  69***********************************98765 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   6.5e-06   0.00089       3      64 ..     114     177 ..     112     197 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 6.5e-06
    TIGR00562   3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyT..rkesG..yllEkGprtllesk 64 
                   +vvv+G+G+ GL+   al+ e  +  + ++E++ + GG  +T  r ++G  y +E+Gp  + + +
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACG-ALSAE-YGSKVAVIESHIKPGGSAHTfsRVHNGgkYSFEVGPSIFEGLS 177
                  68***********987.56666.5999***************633556777********9998755 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   4.7e-06   0.00064     134     171 ..     114     151 ..     106     155 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.7e-06
    TIGR01316 134 kkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                    v viG+G  Gla+ +  a  G +v v e+  kpGG 
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGS 151
                  5799********************************95 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.3   3.9e-06   0.00053       1      38 [.     114     151 ..     114     164 .. 0.90
   2 ?   -2.0   0.0       2.3   3.2e+02     163     199 ..     373     417 ..     357     420 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.9e-06
    TIGR03364   1 tdvvvvGaGivGlahAlaaarrGlkVtvierssraaGA 38 
                  +dvvv+G+G+ Gla  +  a+ G kV+vie + ++ G+
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGS 151
                  79*****************************9999875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2.3
    TIGR03364 163 flwntavtevets.......tvrtsrGevh.aeqvlVcsgadfet 199
                  + +nt v+e+           vr + G+v+ a++ +V + + f+t
  MMETSP1174-20130828|13783_1 373 LALNTHVQELMYDadqkrcvGVRLKSGKVVkAKKAVVSNATPFDT 417
                  4555666665333334477789999999999****9999887776 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00044     0.061      29      69 ..     112     150 ..     107     174 .. 0.84
   2 ?    3.2   0.0     0.051       6.9     185     236 ..     358     410 ..     351     421 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00044
    TIGR01373  29 peydviivGgGGhGlatayylakehGitnvavlekgwlGgG 69 
                   eydv+++G+G  Gla    l+ e+G ++vav+e     gG
  MMETSP1174-20130828|13783_1 112 DEYDVVVIGSGMGGLACG-ALSAEYG-SKVAVIESHIKPGG 150
                  68**************87.5888999.89****98765555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.051
    TIGR01373 185 vawGyaraadarGvdiiqncevtglik.redgrviGvetsrGfigakkvgvav 236
                  +a+ + ra ++r   +  n+ v +l+  +++ r++Gv  + G++  +k +v++
  MMETSP1174-20130828|13783_1 358 MAYAFQRALEKRDGVLALNTHVQELMYdADQKRCVGVRLKSGKVVKAKKAVVS 410
                  689999**99998889999***99876156789********987655555554 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-05     0.003     381     426 ..     115     160 ..     109     168 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
    TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpg 426
                   v+v+G+G +Gl+  a +a+ G +v ++e + ++GG  ++ +++  
  MMETSP1174-20130828|13783_1 115 DVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTFSRVHN 160
                  69***********************************999988865 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.9e-05    0.0039       2      59 ..     114     173 ..     113     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.9e-05
    TIGR00031   2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd..evdekgllvhkyGphif 59 
                  +d++++G+G+ G  +    a+++ +v v+e   + GG +++  +v ++g    + Gp if
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSAHTfsRVHNGGKYSFEVGPSIF 173
                  9************************************98542267777777777777777 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   8.4e-05     0.012       1      46 [.     114     160 ..     114     178 .. 0.88
   2 ?   -1.2   0.0       1.1   1.5e+02     261     295 ..     607     640 ..     605     643 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.4e-05
    TIGR01292   1 ydviiiGaGpaGltaaiYaaranlktlliegk.eaggqltttteven 46 
                  ydv++iG+G +Gl+ +  +a ++ k+++ie++ ++gg   t + v n
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHiKPGGSAHTFSRVHN 160
                  79***********************9999875278888888888877 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
    TIGR01292 261 mrTsveGvfaaGDvrdkslrQvvtaagdGaiAals 295
                   +T v+G+  +GD +         aa++GaiAa++
  MMETSP1174-20130828|13783_1 607 LKTPVDGLLRCGDSCFPG-IGTPSAAASGAIAANT 640
                  589999999999987744.456789999***9986 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.02       2.8       1      34 [.     114     147 ..     114     155 .. 0.91
   2 !    7.4   0.0    0.0019      0.26     100     152 ..     360     413 ..     355     420 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.02
    TIGR00136   1 fdviviGaGhaGieaalaaarlgaktllltlnld 34 
                  +dv+viG+G  G+   + +a  g k+ ++  +++
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIK 147
                  69*************************9987775 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
    TIGR00136 100 kavkealenqpnlsllqeevedliled.ndevkGvvtkdgaklrakavilttGt 152
                   a+++ale+++ +  l+ +v++l+ +  ++++ Gv +k g+ ++ak+ ++   t
  MMETSP1174-20130828|13783_1 360 YAFQRALEKRDGVLALNTHVQELMYDAdQKRCVGVRLKSGKVVKAKKAVVSNAT 413
                  57899********99********98754899****************9998776 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00058      0.08     210     247 ..     111     150 ..     105     161 .. 0.85
   2 ?   -0.1   0.0       0.4        55     266     320 ..     355     412 ..     348     420 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00058
    TIGR03140 210 kekydvlvvGgGPagaaaaiyaarkGlkvalvaeri..GG 247
                   ++ydv+v+G+G  g a    +a  G kva++ ++i  GG
  MMETSP1174-20130828|13783_1 111 DDEYDVVVIGSGMGGLACGALSAEYGSKVAVIESHIkpGG 150
                  579*****************************99874455 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.4
    TIGR03140 266 Gsklaanleehikeynidvleeqkvkkie...teeeakevelesGevlkaksvivatG 320
                   +++a ++++ +++ +  +  +++v++++    ++    v+l+sG+v+kak  +v+  
  MMETSP1174-20130828|13783_1 355 TVEMAYAFQRALEKRDGVLALNTHVQELMydaDQKRCVGVRLKSGKVVKAKKAVVSNA 412
                  56788888999988888888889999998654455566799**********9999865 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002     0.028       4      50 ..     113     160 ..     110     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0002
    TIGR03143   4 lydlvviGgGpaglsaGiyagraklkvliiekd.elGGqititsevvn 50 
                   yd+vviG+G  gl+ G  ++    kv +ie + + GG  ++ s v n
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIESHiKPGGSAHTFSRVHN 160
                  5*****************************987356777777777766 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00022     0.031       1      41 [.     115     156 ..     115     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00022
    TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapk.lpfnntyg 41 
                  D++viG+G+ gla  + +a+ g +v +ie++ k  +  +t++
  MMETSP1174-20130828|13783_1 115 DVVVIGSGMGGLACGALSAEYGSKVAVIESHIKpGGSAHTFS 156
                  9****************************9988344457776 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.0   0.00019     0.026       1      35 [.     114     148 ..     114     152 .. 0.94
   2 ?   -1.6   0.0       2.6   3.6e+02     250     296 ..     599     640 ..     593     641 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00019
    TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                  yDvvv+G G  G + ++  a+ G +V+++e + +p
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKP 148
                  9*****************************98666 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.6
    TIGR02032 250 liPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaev 296
                  l+P+  ++ kt  +++l +GD+      + G G + a+ +g++Aa++
  MMETSP1174-20130828|13783_1 599 LLPFPFPNLKTPVDGLLRCGDS-----CFPGIGTPSAAASGAIAANT 640
                  5788888888888888888886.....47788999999999999986 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00021     0.029     535     576 ..     111     152 ..      97     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00021
    TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                  +++  v viG+G  Gl+ g + a  G +v+v+e + k+gG  
  MMETSP1174-20130828|13783_1 111 DDEYDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKPGGSA 152
                  455689*********************************975 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00074       0.1       1      42 [.     114     152 ..     114     160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00074
    TIGR02023   1 ydvlviGggpsGaaaaetLakagievillerelarikPCGGa 42 
                  ydv+viG+g +G a     a+ g +v+++e +   ikP G a
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESH---IKPGGSA 152
                  89*************999************88...9**9987 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.8   0.00054     0.074       1      33 [.     114     146 ..     114     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00054
    TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGi 33 
                  yd+v+iGsG +++a     ae+g kv+++e+ i
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHI 146
                  8***************9************9865 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.055       7.5     145     175 ..     113     143 ..     102     148 .. 0.89
   2 ?    4.6   0.0     0.023       3.2     101     127 ..     381     407 ..     371     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.055
    TIGR03911 145 ekdvlviGlGkvGtaaavalvkkGakvyvyd 175
                  e dv+viG G  G a  +   ++G kv v +
  MMETSP1174-20130828|13783_1 113 EYDVVVIGSGMGGLACGALSAEYGSKVAVIE 143
                  679***********************98876 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.023
    TIGR03911 101 eiilladderfiavnlktGkiadnsea 127
                  e+++ ad++r ++v lk+Gk+++ ++a
  MMETSP1174-20130828|13783_1 381 ELMYDADQKRCVGVRLKSGKVVKAKKA 407
                  56778*****************98876 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.3    0.0023      0.31       1      47 [.     114     158 ..     114     163 .. 0.92
   2 ?    0.3   0.1      0.37        50     149     196 ..     360     411 ..     352     419 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
    TIGR01377   1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesri 47 
                  +Dv+v+G+G+ G a++   a  g kv ++e+   p   Gs h  sr+
  MMETSP1174-20130828|13783_1 114 YDVVVIGSGMGGLACGALSAEYGSKVAVIESHIKP--GGSAHTFSRV 158
                  8*****************************98776..6999998886 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.37
    TIGR01377 149 ralqelaealGaivrdgtkvveikrd...ellvtvktkkks.yqakklvvta 196
                   a+q + e+  +++  +t+v+e+  d   +  v v+ k+++  +akk vv+ 
  MMETSP1174-20130828|13783_1 360 YAFQRALEKRDGVLALNTHVQELMYDadqKRCVGVRLKSGKvVKAKKAVVSN 411
                  589999999*************998876677899999887625899999985 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.1   0.00088      0.12       1      39 [.     115     152 ..     115     163 .. 0.86
   2 ?   -1.0   0.0      0.88   1.2e+02     135     185 ..     361     409 ..     353     416 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00088
    TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                  dvvv+GsG+ Gl+ +    + g  +v v+e     GG +
  MMETSP1174-20130828|13783_1 115 DVVVIGSGMGGLACGALSAEYG-SKVAVIESHIKPGGSA 152
                  8************998888888.9999999998888866 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.88
    TIGR01813 135 klskkakkegvelrlnskvedlikd.dqgqvtGvkvkekgkkikikaakaVv 185
                  +++++++k++  l ln++v++l+ d dq + +Gv  k+      +ka+kaVv
  MMETSP1174-20130828|13783_1 361 AFQRALEKRDGVLALNTHVQELMYDaDQKRCVGVRLKS---GKVVKAKKAVV 409
                  56667777777789999999999763677889988764...33456666665 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3     0.001      0.14       1      33 [.     116     148 ..     116     150 .. 0.92
   2 ?   -1.6   0.1       1.5     2e+02     110     156 ..     360     410 ..     355     412 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.001
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                  v++iG G  Gl + +  ae g kV+++E++ k 
  MMETSP1174-20130828|13783_1 116 VVVIGSGMGGLACGALSAEYGSKVAVIESHIKP 148
                  79**************************97665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
    TIGR00275 110 daLlkelkelgvevlteskvksi...kkeeekfevet.ekkeleakkvila 156
                   a++++l++    + ++++v+++    +++++++v++ ++k ++akk +++
  MMETSP1174-20130828|13783_1 360 YAFQRALEKRDGVLALNTHVQELmydADQKRCVGVRLkSGKVVKAKKAVVS 410
                  678999999999999999**9997433455568999988899999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        30  (0.00731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.82u 0.19s 00:00:01.01 Elapsed: 00:00:01.51
# Mc/sec: 606.63
//
Query:       MMETSP1174-20130828|13786_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.009   13.7   0.0      0.015   13.0   0.0    1.2  1  TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family


Domain annotation for each model (and alignments):
>> TIGR02999  Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.6e-06     0.015     133     172 ..     158     196 ..     154     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.6e-06
    TIGR02999 133 skvkprlaevveLrffaGltveeiAellevsvrtverdwk 172
                   +  +r + +v+L +  G+++e+i+++++v  rt++rd++
  MMETSP1174-20130828|13786_1 158 TSSGDRHEDIVQLHY-EGFNIEQISSMIGVCTRTIRRDMR 196
                  566789999****86.9*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.72
# Mc/sec: 1028.42
//
Query:       MMETSP1174-20130828|13790_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.8   0.0       0.17    9.1   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0016   15.6   0.0     0.0023   15.1   0.0    1.1  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00076       1.6      39     100 ..      53     123 ..      22     136 .. 0.76
   2 !    9.1   0.0   8.1e-05      0.17     187     215 ..     162     190 ..     156     225 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00076
    TIGR02427  39 dfrvlryDkrGHGlS.....dvpegpysiedladdvlallDalgi....ekaavcGlSlGGliaqaLaarr 100
                  +++v +yD  G G+S     dv  ++ s ++  +d++a  D l      +++++ G SlG   + +La r+
  MMETSP1174-20130828|13790_1  53 NVNVFAYDYTGYGKSrmykvDVEPVTPSEQKVYNDITAAYDFLRKrfkpSQIVLYGRSLGSGPTCYLAQRA 123
                  57899**********77766677778888999999999999765411116788899999977777777665 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.1e-05
    TIGR02427 187 erleeiavPtlviaGdeDgstPpelvrei 215
                  +r+++i+ P+ vi G+ D + P+ + +e+
  MMETSP1174-20130828|13790_1 162 DRVGSINSPVFVIHGTRDEVVPFWHGQEL 190
                  7999*******************999987 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-06    0.0023      52     133 ..      51     139 ..      29     148 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.1e-06
    TIGR03100  52 alAeaGlpvlRfDyrGmGDs.......egelstFedieaDiaAAidafleaapeleeivlwGlCDaAsAvlly...a.tadervaglvllnPW 133
                  +l    + v+ +Dy G G s       e  + + +++ +Di+AA d ++++  + ++ivl+G   +   ++     a ++ ++vag++l  P 
  MMETSP1174-20130828|13790_1  51 KL---NVNVFAYDYTGYGKSrmykvdvEPVTPSEQKVYNDITAAYDFLRKRF-KPSQIVLYGRSLGSGPTCYLaqrAtKEGHPVAGVILQSPL 139
                  44...478**********772222222556777788999*******888876.569******9988887776634433566789999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 657.20
//
Query:       MMETSP1174-20130828|13787_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-90  300.3   0.0    5.9e-88  293.0   0.0    2.9  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
      1e-84  283.0   0.0    9.5e-83  276.5   0.0    2.4  1  TIGR00564 trpE_most: anthranilate synthase component I
    4.5e-84  280.5   0.4    1.5e-82  275.6   0.3    2.4  2  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
    6.2e-78  260.6   0.0    2.3e-77  258.7   0.0    1.9  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    4.5e-76  254.8   0.2    1.5e-74  249.8   0.1    2.7  1  TIGR01820 TrpE-arch: anthranilate synthase component I
    4.3e-48  162.2   0.4    3.5e-44  149.4   0.0    2.8  2  TIGR00565 trpE_proteo: anthranilate synthase component I
    1.8e-36  123.2   2.5    2.1e-36  123.0   0.1    2.1  2  TIGR01815 TrpE-clade3: anthranilate synthase
    2.7e-31  106.9   0.0      1e-30  105.0   0.0    1.8  2  TIGR00543 isochor_syn: isochorismate synthase
    2.8e-29  100.0   0.0    1.1e-28   98.0   0.0    1.8  1  TIGR03494 salicyl_syn: salicylate synthase


Domain annotation for each model (and alignments):
>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.0   0.0   1.3e-90   5.9e-88      13     328 ..     269     611 ..     181     612 .. 0.74

  Alignments for each domain:
  == domain 1    score: 293.0 bits;  conditional E-value: 1.3e-90
    TIGR00553  13 aalepklaalladhrtrtkllrllvferveae.eaeaveaeseaaaeeqallseieveit.......................raeyaeaikkvqeelkaGdvYqanltqqleatldgd......plalyrklrkeqpapfsafl..........elgek........avlslSpElFlsvdgs.eletkPiKGTlprgadpe.eDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllralFPggSiTGaPKlrameiikelEkqrRgvYcGaiGllspegeldlnvaIRTlelsggeavlgvGggivadSdaeaEfeEvllKakv 328
                   ale+  +a +a     +++ r+l+ ++ +++  ae +                     +                        +ey++ ++k+q  +++G++Y+++lt+++ ++++ +      pl+ y++lr+ +pap+s+f+          +++++        a+  +SpE+Fl+v+++  +e+kPiKGT++r+ d+e +D a a+aLa seKdraEnlmivDL+RnDlgR+++  sv+v+ l++ve y tvhqlvstv+++l + + + d++ a FPggS+TGaPK r+me+i+ +E  +RgvY+G++G+++  g+ dln++IRT  ++  ++++++Gg+i+a Sd+  E++E+ lKak 
  MMETSP1174-20130828|13787_1 269 LALEQWFTATAASL---EEVTRFLAVSEDSRSdSAEGAS--------------------SgmsapassslsplpplklvpdksSDEYEADVRKCQALIEEGETYEVCLTTRFVGEVSDQddgpwsPLETYKQLRRGNPAPYSSFMlvhkdpagrgQTDTTkvadessfALCCSSPERFLRVSRDgWIESKPIKGTAARDPDDEaKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKA 611
                  22222222222222...2222222222222221122222....................022222222333333333333344*****************************999875323433389*****************8444443333322333111122224566899******9998**************987636999************************************************************************************************************************************************************96 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.5   0.0   2.1e-85   9.5e-83      86     454 ..     174     616 ..     150     617 .. 0.84

  Alignments for each domain:
  == domain 1    score: 276.5 bits;  conditional E-value: 2.1e-85
    TIGR00564  86 ldeplsggavGylgydtvrlveklke.......................eaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkelekavkaleekkes...........................ftsnvekeeyeekvakakeyikaGdifqvvlSqrleakveak......pfelYrkLRtvNPSpylyyldled..................felvgsSPEllvkvkgkr.vetrPiAGtrkRG.atkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGAPKvrAmelidelEkekRgiYgGavgylsfdgdvdtaiaiRtmvlkdgvayvqAgaGiVaDSdpeaEyeEtlnKakallrai 454
                  l +p+  g vGyl+y++ + +e+l +                       e  d+ ++pd++++l + v+ fDh +++++l++ +  +a+ + e++++ +le+  +    +le+ +++l  +++s                           + ++ +++eye++v+k +  i++G+ + v l  r+  +v+ +      p+e Y++LR+ NP+py  ++ ++                   f l  sSPE++++v+ +  +e +Pi Gt  R  +++++Dea ++ L  +eK+rAE lm+vDL RND+g+v+ l+sv+v++l+++e+y+ v  +vS+V+G+l+ ++   Da+ a++P G ++GAPK+r me+id +E + Rg+Y+G++gy+   g+ d  i+iRt++++ +++ v Ag+ i a Sdp+ E++E   Kaka+ +ai
  MMETSP1174-20130828|13787_1 174 L-PPFDCGFVGYLSYEMRHETERLLHsgrspqrteydrrhagaddedgdEDDDDDKIPDAYFILADRVVCFDHHQRRAYLLALEDSYASAD-EQQQQLALEQWFTATAASLEEVTRFLAVSEDSrsdsaegassgmsapassslsplpplkLVPDKSSDEYEADVRKCQALIEEGETYEVCLTTRFVGEVSDQddgpwsPLETYKQLRRGNPAPYSSFMLVHKdpagrgqtdttkvadessFALCCSSPERFLRVSRDGwIESKPIKGTAARDpDDEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAVISAI 616
                  3.579999999999999998887644444555566666666666665534478899*************************9998888885.444444555555444444444333332222222234455444544444444555555555555555*****************************999987788888*****************9999887799*****************************96666**********998255679*****************************************************************************************************************************************************************99886 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.25   1.1e+02      22      71 ..     223     271 ..     219     300 .. 0.61
   2 !  275.6   0.3   3.2e-85   1.5e-82      29     355 .]     270     612 ..     246     612 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.25
    TIGR01824  22 kteekglpvlallryeaavaldee...eqivavaeaeaekegafataadalaa 71 
                    +++++p+++ + ++ +v +d++     ++a++ +++++ +  ++   +la+
  MMETSP1174-20130828|13787_1 223 DDDDDKIPDAYFILADRVVCFDHHqrrAYLLALE-DSYASADEQQQ---QLAL 271
                  5688999**************9997522333333.34444444444...3332 PP

  == domain 2    score: 275.6 bits;  conditional E-value: 3.2e-85
    TIGR01824  29 pvlallryeaavaldeeeqivavaeaeaekegafataadalaavaaatslaspdvgplaadlealidraayetavkrikdyikaGdvfQaNlsrrltaria....aevdplalfealraanpapyaill..................eepgvdvvsaSPElllkregr.evqtrPIaGTrarg.adlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTGaPKvraleiIeelEptrRgpytGsvgvidadGdadlnilIRTleaaearlelrvGaGivadSdpegEydEteaKaral 355
                  +  +++ + a ++l+e  + +av+e++   ++  + a+  ++a a    +   + +pl+  l      ++ye +v++ ++ i++G+++ + l+ r+++++         pl+ +++lr  npapy++++                  +e   ++  +SPE++l++  +  ++++PI+GT ar  +d a Dea+a++L  ++KdrAE++mivDL+RNDLgrvc+  +v+vp l++vesy +v+ lvS+V+g+L++g+++ d++ A+FPggs+TGaPK+r++e+I+++E  +Rg y G++g+++ +G+adlni IRT+ ++ +++++++G+ i+a Sdp+ E +E e Ka+a+
  MMETSP1174-20130828|13787_1 270 ALEQWFTATA-ASLEEVTRFLAVSEDSR--SDSAEGASSGMSAPASSSLS---PLPPLK--LVPDKSSDEYEADVRKCQALIEEGETYEVCLTTRFVGEVSdqddGPWSPLETYKQLRRGNPAPYSSFMlvhkdpagrgqtdttkvaDESSFALCCSSPERFLRVSRDgWIESKPIKGTAARDpDDEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAV 612
                  3333333332.23333345555555433..33455545555555544444...355666..55556789******************************996433345689**************99873333222222111111112233467789*******988879************8356799***************************************************************************************************************************************************************985 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.7   0.0   5.1e-80   2.3e-77     354     740 ..     168     615 ..     161     617 .. 0.82

  Alignments for each domain:
  == domain 1    score: 258.7 bits;  conditional E-value: 5.1e-80
    TIGR01823 354 vdkgdlevPfyGGllGilgyeig.................rdksaksia.tasenedanelvaDakLvfversivvdhktgklyvqsldvtdevarewlg.......................dLaastvrkkvikss.lsaefldke.eidlvikfPkk..edyakavkaCqeeleaGdsyelCLtdetlvvlpaevsq....dwelykrlrklnPaafsgfvrlkhvk..................llsssPekflevdrdsrlklkPikGtvkkeedmsl..ekarkiL.ksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvkakvessaskktrysgldvLkkslPPGsmtGaPkkrsvrlLedvedrkrGiysGvlGyldvtgsgefsvlirsafkykdedlWriGaGGavtvLstpeGeyeemltklesvlqi 740
                  +++++   Pf  G++G+l+ye+                   d+  ++       ++d +++ +Da ++  +r + +dh++++ y  +l+     a e+ +                          +s++      ss +sa+   +   +  +  +P+k  ++y   v++Cq+ +e+G++ye+CLt++ +    +  ++    + e yk+lr+ nPa++s+f+ +++                    l +ssPe+fl v rd  ++ kPikGt  +++d +   e a k L  sek+ +enlmi+DL+rnDL  ++  ++v+v+ l++ve + +v+qlvs+v++k    +         d++  s+P GsmtGaPk r++++++ +e+r rG+ysG+lGy+ ++g+++ +++ir+a      +   + aGGa+t Ls p  e++em +k+++v+++
  MMETSP1174-20130828|13787_1 168 AISPEDLPPFDCGFVGYLSYEMRheterllhsgrspqrteYDRRHAGADdEDGDEDDDDDKIPDAYFILADRVVCFDHHQRRAYLLALEDSYASADEQQQqlaleqwftataasleevtrflaVSEDSRSDSAEGASSgMSAPASSSLsPLPPLKLVPDKssDEYEADVRKCQALIEEGETYEVCLTTRFV-GEVSDQDDgpwsPLETYKQLRRGNPAPYSSFMLVHKDPagrgqtdttkvadessfaLCCSSPERFLRVSRDGWIESKPIKGTAARDPDDEAkdEAAAKALaCSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTG------VGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQ--PHKVTVNAGGAITALSDPTMEHQEMELKAKAVISA 615
                  566677779*************99999999999955443322222222202223445667899************************999888888888778888888*****999988865423344444444333313333333321244577889983358***********************9754.444444434555789****************9765444799**************999***************************9876542245666662589**************************************************988776......5599999***************************************************9765..566789************************99865 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   0.1   3.2e-77   1.5e-74      26     448 ..      73     616 ..      50     617 .. 0.72

  Alignments for each domain:
  == domain 1    score: 249.8 bits;  conditional E-value: 3.2e-77
    TIGR01820  26 kkaryslvgaspeavvkiner........kavelfeeivskvkkleg.......kkkae.....................gkdvldalrkalkklkeielleeerqtflGglvGyvaYdavrdywedaeke..kes.......................eipeaefllvtkvlvfdhleeevslvvteevsad...................eaekiveklkeaekeeeekkeaeleslaekee.....................................feeavekakekifeGdifqvvlSrklelrld.ld.....plelYaklreiNPSPYm.yllefgd........r.........aivGaSPEtlvrve.krtveinPiAGtapRgks.eeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGaPKirAmeiieelEkepRgvYgGgvGyfslngdadlAiviRtaliekkklriqaGAGivaDSdPekEfeEterKmkavlkai 448
                  ++arys++g ++  ++++ e         +a++++++  +++++  g       +   +                     +k + + ++++ ++ ++  ++ e+   f+ g+vGy++Y+  ++     ++   + +                       +ip+a f+l ++v+ fdh +++ +l+++e+  a                     +e++++ l  +e                  +                                     +e+ v+k +  i+eG+ + v l  +   +++ +d     ple Y++lr+ NP+PY  ++l ++d                  a+  +SPE ++rv+ +  +e +Pi Gta R+ + e++De+ ak l  +eK+rAE +m+vDL RND+++v++  sv+v+ +m+v+ y  v  ++S+v g+L++ +   da+ A fP G ++GaPK r me+i+++E  pRgvY+G++Gy++l g adl iviRta+++ +k++++aG  i a SdP++E++E e K+kav++ai
  MMETSP1174-20130828|13787_1  73 TNARYSFMGDAKGPLAERLEFflstknnkDAATSYDDGEDDAEEPMGgslrivhS---DgtskqlntplvpylqsrlnsfSKPTHRLFNEPTSSSSSHAISPEDLPPFDCGFVGYLSYEMRHETERLLHSGrsP-QrteydrrhagaddedgdedddddKIPDAYFILADRVVCFDHHQRRAYLLALEDSYASadeqqqqlaleqwftataaSLEEVTRFLAVSE------------------DsrsdsaegassgmsapassslsplpplklvpdkssdeYEADVRKCQALIEEGETYEVCLTTRFVGEVSdQDdgpwsPLETYKQLRRGNPAPYSsFMLVHKDpagrgqtdTtkvadessfALCCSSPERFLRVSrDGWIESKPIKGTAARDPDdEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAVISAI 616
                  4566666666544333332221111111134444444443333333334433320...1334444555666655555553333444444555555555555556777888888888888877543222222211.1234566777778888888888889*********************99999987655555655555555544443332222222222222..................12223445555555666677899999999999999999**********************877655443233233339***************5499999763333322212222223335889*********857789***********965167899*****************************************************************************************************************************************************************998 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00021     0.093     150     217 ..     225     296 ..     216     307 .. 0.70
   2 !  149.4   0.0   7.6e-47   3.5e-44     223     495 ..     327     618 ..     321     621 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00021
    TIGR00565 150 kndnvpdfifylaenlividhkeksveikaa..lfaer..eekqvaiakldlkeaqkskkadfvpkvsaasr 217
                  ++d++pd  f la++++  dh+++++ + a    +a    +++q+a ++    +a+ ++++   + vs +sr
  MMETSP1174-20130828|13787_1 225 DDDKIPDAYFILADRVVCFDHHQRRAYLLALedSYASAdeQQQQLALEQWFTATAASLEEVTRFLAVSEDSR 296
                  5679**********************9987522455551134444445555556666677776666666665 PP

  == domain 2    score: 149.4 bits;  conditional E-value: 7.6e-47
    TIGR00565 223 lsdeefegvvkalkkeikkGeifqvvpsrrfslecp.......etlaayyqlkksnPsPymfyl..................kdedfilfGasPesalkydaesrqleiyPiaGtrprGkdadGnidrdldsrlelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGaPkikalqliyqlenqrrgsyGGavGyltseGdldtcivirsalvkngiavvqaGaGvvldsvPqseadetrakaravlkairk 495
                   s +e+e  v+  +  i+ Ge + v ++ rf  e         ++l +y ql++ nP+Py  ++                  +++ f l  +sPe  l+ +     +e  Pi Gt  r  d + +     d      l    k+rae lm+vdl rndl rvc   + +v  l++v+ y  v  lvs v G+l  +     a  a    G+++GaPk +++++i  +e++ rg y G++Gy++  G  d  ivir+a+v+    +v+aG  +   s+P +e +e   ka+av+ air 
  MMETSP1174-20130828|13787_1 327 KSSDEYEADVRKCQALIEEGETYEVCLTTRFVGEVSdqddgpwSPLETYKQLRRGNPAPYSSFMlvhkdpagrgqtdttkvaDESSFALCCSSPERFLRVS-RDGWIESKPIKGTAARDPDDEAK-----DEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAVISAIRG 618
                  57789**************************98875222222368***************888756544444443333222223579***********986.5678**********998886543.....44445578999***********************************************************************************************************************************************************96 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.12        56     174     201 ..     231     258 ..     222     281 .. 0.74
   2 !  123.0   0.1   4.6e-39   2.1e-36     229     500 ..     325     621 ..     295     624 .] 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.12
    TIGR01815 174 dlvlylpdelvvvdyyaakaflveydfi 201
                  d  + l d++v  d+ + +a+l++ +  
  MMETSP1174-20130828|13787_1 231 DAYFILADRVVCFDHHQRRAYLLALEDS 258
                  667889***************9987643 PP

  == domain 2    score: 123.0 bits;  conditional E-value: 4.6e-39
    TIGR01815 229 adhkpGeyaklvekakeafrrGdlfevvpgqkffeaceaa......psevferlkainpspyeffvnl.....Grge...........y.lvgaspemfvrve.GrrvetcpisGtikrG.ddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksprrwyGGavGrlgfnGdlntGltlrtirlkdgiaevraGatllydsdpeaeeaetelkaaalieairdaka 500
                   d+   ey+  v k ++ +  G+ +ev  + +f+ +  ++      p e +++l+  np+py+ f+ +     Grg+           + l ++spe f+rv+  + +e+ pi Gt +r  dd  +d a  + l  s+kd ae  m  d+ rnd  rvc   sv+v    q+e y  +   v  v G+l  +    da+++     ++tGapk  +++ i+  e  pr  y G++G++++ G  +  +++rt  ++     v aG ++   sdp  e++e elka a+i air ++a
  MMETSP1174-20130828|13787_1 325 PDKSSDEYEADVRKCQALIEEGETYEVCLTTRFVGEVSDQddgpwsPLETYKQLRRGNPAPYSSFMLVhkdpaGRGQtdttkvadessFaLCCSSPERFLRVSrDGWIESKPIKGTAARDpDDEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAVISAIRGSEA 621
                  5788899**************************988776433333378999************99865333334443222222222333467899*******83578************73678889999999********************************************999*****************************************************************************************************************6554 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.4   1.8e+02      82     140 ..     313     386 ..     240     402 .. 0.52
   2 !  105.0   0.0   2.3e-33     1e-30     152     348 ..     415     615 ..     404     616 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.4
    TIGR00543  82 k...........eeidkeawaeaveealeeirqgkleKvVLarel..elklaed..ievaavleelrqqnkday 140
                               +   +++++ v + ++ i++g+   v L ++   e++ ++d   ++ +  ++lr+ n++ y
  MMETSP1174-20130828|13787_1 313 SslsplpplklvPDKSSDEYEADVRKCQALIEEGETYEVCLTTRFvgEVSDQDDgpWSPLETYKQLRRGNPAPY 386
                  22333333333355666778888888888888888888888776511232222234566666666666666655 PP

  == domain 2    score: 105.0 bits;  conditional E-value: 2.3e-33
    TIGR00543 152 flGatPErLlsrekee.leteALAGtvkrsad.keedaklgekllkdeKnlrEhqlVvekirreLekic..eslevsekpellklakvqHLytkikarlkkeksllkllkqLhPTPAvgGlPreeAlelireiEtfdRglYaapiGwldkegngefiVaiRSalvedeqvrlyAGaGivadSdpesEweEvelKlatllra 348
                  +  ++PEr l++  +  +e++++ Gt++r+ d +++d+ ++++l+ +eK++ E+ ++v+ +r++L  +c  +s++v+  +++   ++v  L + ++++l++++ + + + +  P   + G P+ + +e+i  iE   Rg+Y++++G++   g +++ + iR a v++++v++ AG+ i a Sdp  E +E+elK++++++a
  MMETSP1174-20130828|13787_1 415 LCCSSPERFLRVSRDGwIESKPIKGTAARDPDdEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCalNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAKAVISA 615
                  5689******987665269**********97616689999999*************************94458899999999999***************99**********************************************************************************************99876 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   2.4e-31   1.1e-28     161     417 ..     329     610 ..     305     616 .. 0.79

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 2.4e-31
    TIGR03494 161 aseykervaaavaeiaagk.YkkvilsRav.elpaavDlp....atlllgRrkn.tPvRsfllrlgekealG............f.....sPelvlsvradgkvvtePLaGtRale.egpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiPkaaaieailrleetpReLYsGavllieadetldaaLvLRavyqksektwlqaGaGiiaqstPeReleetcekla 417
                  ++ey++ v + +a i +g+ Y+  ++ R v e++++ D p    +t+   Rr n +P  sf+l + +    G            f     sPe  l v++dg +  +P+ Gt a++ +++++++++ ++L    k+ +e  + v    ++l +vc+ ++v v  lm+v     v  L stv+g+La +    da+ + fP    +G Pk+ ++e i  +e  pR++YsG++  +   ++ d  +v+R++  + +k  ++aG  i a s+P  e +e   k  
  MMETSP1174-20130828|13787_1 329 SDEYEADVRKCQALIEEGEtYEVCLTTRFVgEVSDQDDGPwsplETYKQLRRGNpAPYSSFMLVHKDPAGRGqtdttkvadessFalccsSPERFLRVSRDGWIESKPIKGTAARDpDDEAKDEAAAKALACSEKDRAENLMIVDLVRNDLGRVCALNSVHVPVLMQVESYKTVHQLVSTVRGKLAAGTGVGDAIVASFPGGSMTGAPKTRTMEVIDAIEGRPRGVYSGTLGYMALGGAADLNIVIRTAIVQPHKVTVNAGGAITALSDPTMEHQEMELKAK 610
                  5666666666666666654244445556553455555555333345666666554566666666544222111111111111111222239*********************99862567889999******************************************************************************************************************************************************887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.17s 00:00:00.95 Elapsed: 00:00:00.77
# Mc/sec: 1069.63
//
Query:       MMETSP1174-20130828|13789_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-14   50.3   0.0    2.5e-14   49.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.8e-06   25.4   0.0    3.6e-06   24.4   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.2e-17   2.5e-14      52     190 ..       3     150 ..       1     156 [. 0.79

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.2e-17
    TIGR03903  52 gllFavFeyveGrtlrevLaad..GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesha.kvLDFGigaLlpgvedadeatl...trtt...evlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvq 190
                  ++l+ v ey  G tl ++++ +    L+  e + ++ q++ ++   h++G+vhRDLkP+n +   +++e+ a kv+DFG++  +p  +  ++  +   t+++   e l      + e +R     +++D+++ G+i+   LtG++ ++
  MMETSP1174-20130828|13789_1   3 DVLYLVQEYCRGGTLENRINEKrrEGLAKSEVSVILRQMVRGVLYCHAHGLVHRDLKPNNFVFDSTENETAAlKVIDFGLSVGVPTEQTENKYVMaagTLEHsapETLPVRDTKSGEWIRIARYDTAADMWSIGVIFYLMLTGEQLIN 150
                  6899**************9875225699********************************99987777766659*******9888765533332211133322235666666677777888888999****************98775 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.8e-09   3.6e-06      74     137 ..       7      84 ..       2     102 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.8e-09
    TIGR03724  74 ivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk.....ddklyliDfGLgk 137
                  +v ey +g +l++ ++ek+           +l+++ + v  +H +g+vh Dl ++N++++     +  l +iDfGL+ 
  MMETSP1174-20130828|13789_1   7 LVQEYCRGGTLENRINEKRReglaksevsVILRQMVRGVLYCHAHGLVHRDLKPNNFVFDsteneTAALKVIDFGLSV 84 
                  566777788888877776667777777768899**************************644433455779*****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1322.89
//
Query:       MMETSP1174-20130828|13794_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 203.98
//
Query:       MMETSP1174-20130828|13792_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1532.54
//
Query:       MMETSP1174-20130828|13795_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|13791_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1044.18
//
Query:       MMETSP1174-20130828|13798_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 204.81
//
Query:       MMETSP1174-20130828|13797_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|13800_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   14.2   0.1        2.1    6.0   0.0    3.2  2  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00052       2.1       2      14 ..      53      65 ..      53      66 .. 0.96
   2 !    4.7   0.0    0.0014       5.7       1      11 [.     192     202 ..     192     205 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00052
    TIGR02167  2 FsgCssLtsLDlS 14
                 F+ C+sL  +DlS
  MMETSP1174-20130828|13800_1 53 FRACDSLRRIDLS 65
                 999*********9 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0014
    TIGR02167   1 MFsgCssLtsL 11 
                  +F +C+sL+ L
  MMETSP1174-20130828|13800_1 192 VFENCDSLKRL 202
                  5*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1502.65
//
Query:       MMETSP1174-20130828|13808_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|13805_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 993.06
//
Query:       MMETSP1174-20130828|13804_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-14   51.5   0.0    1.1e-08   32.2   0.0    3.2  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.8e-12   1.1e-08       2     103 ..      84     191 ..      83     198 .. 0.77
   2 !   10.3   0.0   1.2e-05     0.048     248     350 ..     310     421 ..     291     448 .. 0.71
   3 !    5.1   0.0   0.00044       1.8     404     434 ..     520     550 ..     510     557 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.8e-12
    TIGR03417   2 rpnililmvdqlagtllpaygpaevl.kaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefasd......ipt.yahylraaGyktalsGkmhf 103
                  +p i+++m+d +  + +   g +++    Pn+++la  +v+++n y++  lc+Para+ll+Gk P ++g   +    + +      + t     l+++Gy+t + Gk h+
  MMETSP1174-20130828|13804_1  84 KPHIVLVMADDMGWNDVGY-GSNDLKgASPNIDALAFSGVRLENFYSQ-HLCTPARAALLTGKYPINLGLQHEEVITPMSpwglnlTETlLPELLKQNGYRTHVVGKWHL 191
                  899*********9888876.776654268***************9975.7*****************9986654332222112111333145789999********9996 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1.2e-05
    TIGR03417 248 irrarrayfaaisyv.ddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.....kmsffegsarvPllvaape...rleagrveaavstvdllPtlvelagvelee 350
                  i++  r  fa++  v d+ + ++ ++l ++++ ++ti +f+sd G      G        k   feg+ +v  +v+ p+     + ++    +   d  Pt+ e ag ++  
  MMETSP1174-20130828|13804_1 310 IHNEERRRFAKLLMVtDKTVEDIQSALITAGMWNNTIFIFTSDNGGCSLAGGYNSplrggKHFLFEGGIKVRSFVSGPAipvSAQGTKYLGMMHISDWFPTILEAAGKDVPD 421
                  5566666677665552788999**********************97643333322112226667999999999999887111233334444555568899999999888765 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.00044
    TIGR03417 404 eqlydleadPkelenlaeepehaetlealra 434
                  + l+++++dP e+ nl ++p++a++ +al +
  MMETSP1174-20130828|13804_1 520 DWLFNITNDPYEKINLFHDPDYADAKDALME 550
                  679*******************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.65
# Mc/sec: 1261.00
//
Query:       MMETSP1174-20130828|13803_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   60.7   0.1    7.4e-15   51.7   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0017   15.7   0.0     0.0027   15.0   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.6e-18   7.4e-15      25     131 ..     184     294 ..     169     309 .. 0.85
   2 !    7.0   0.0   0.00011      0.22     142     186 ..     328     375 ..     317     380 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.6e-18
    TIGR03903  25 FrReialCarL.shPnivaL...lDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaL 131
                    Rei+  a+L +h n+vaL   l+  +     lF v e+  G  l + ++           r   q LD+l+  hd+Gv hRDLkP+n+++s + +    k+ DFG++a 
  MMETSP1174-20130828|13803_1 184 IYREINNMAHLgEHKNVVALqevLEYVQDSKSTLFLVLELATGGELLDGIKMGCGTNEDVARRYFQQLLDGLSYCHDKGVCHRDLKPENLLLSDSSEAAVLKIADFGLSAA 294
                  5699999999967*****984435555666779***************999876666667778999******************************************986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00011
    TIGR03903 142 tltrttevlGsPaYaaPeqLRgepv....taksDlYaWGLivleCLtGk 186
                  +l r   v+GsP+Y aPe    e+v     +k+Dl++ G+i+   L G 
  MMETSP1174-20130828|13803_1 328 NLRRLRSVVGSPHYVAPEVT-TESVqgydGPKADLWSAGVILYAMLAGT 375
                  56677889*********965.5555233369**********99999886 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-06    0.0027      94     137 ..     246     293 ..     209     306 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.3e-06
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkddk....lyliDfGLgk 137
                  ++++++ + ++ +H++g++h Dl ++N++++d++    l + DfGL+ 
  MMETSP1174-20130828|13803_1 246 RYFQQLLDGLSYCHDKGVCHRDLKPENLLLSDSSeaavLKIADFGLSA 293
                  677788888899******************754311114577****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 1860.42
//
Query:       MMETSP1174-20130828|13810_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1174-20130828|13811_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|13813_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   10.5   0.0      0.054   10.1   0.0    1.1  1  TIGR01561 gde_arch: putative glycogen debranching enzyme, archaeal type


Domain annotation for each model (and alignments):
>> TIGR01561  gde_arch: putative glycogen debranching enzyme, archaeal type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.3e-05     0.054     507     540 ..     135     170 ..     118     190 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.3e-05
    TIGR01561 507 kkekki..ldlvekdllrqfGlkslssedplykgvy 540
                  ++ k++  + + ek+l  ++Gl+sls+ed  yk   
  MMETSP1174-20130828|13813_1 135 ERIKAVinVMRDEKKLWSPHGLRSLSTEDLFYKQEN 170
                  3334441244569*******************9753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 937.82
//
Query:       MMETSP1174-20130828|13814_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 654.21
//
Query:       MMETSP1174-20130828|13815_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 269.98
//
Query:       MMETSP1174-20130828|13818_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 470.21
//
Query:       MMETSP1174-20130828|13822_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   16.8   8.5    0.00027   16.6   5.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.024   11.7   0.1      0.027   11.5   0.1    1.1  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
        2.5    4.8   9.1        4.1    4.1   6.3    1.4  1  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   5.9     2e-07   0.00027     378     490 ..      14     126 ..       2     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-07
    TIGR02168 378 eeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlq 490
                  + +l++ +++va++ ++ ++++ +l+++ + +e+l ++  +++++ ++ + kl++aeae+kel++++++l  ++ ele+++++l   l+e++++ +++++ +  + +e +q q
  MMETSP1174-20130828|13822_1  14 RPALKAMEAKVAAAVRDCENASVKLSSMHEVKERLMAKALKAEETLRQTSVKLSKAEAEKKELSGQCSKLLSTKVELEKAHASLTLLLKEKQKRRRHMSSSIGPVPREQQQQQ 126
                  56778888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888887777776655 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     2e-05     0.027     183     278 ..      17     111 ..       2     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
    TIGR00996 183 lnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspel 278
                  l++   ++ ++++   +    l+   +  +rl++++ ++ ++l+++s +L++a a+ ++ls+q ++ll+    +L +a a+L  +l++ ++++  +
  MMETSP1174-20130828|13822_1  17 LKAMEAKVAAAVRDCENASVKLSSMHEVKERLMAKALKAEETLRQTSVKLSKAEAEKKELSGQCSKLLSTK-VELEKAHASLTLLLKEKQKRRRHM 111
                  44444555555555555555555666666788899999999***************************988.*************99998887765 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.3     0.003       4.1      78     175 ..      13     110 ..       6     129 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.003
    TIGR00998  78 aelalekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqaeldleRresllkkgliskEeldrarkallsakaaLeaaiqeaeaAnqa 175
                  a+ al+ +eak+aa+vr  +++ +k + ++   e l +k  +a e l+q+ ++l + e+  k+   +  +l  ++  l++a+a+L   ++e+++ +  
  MMETSP1174-20130828|13822_1  13 ARPALKAMEAKVAAAVRDCENASVKLSSMHEVKERLMAKALKAEETLRQTSVKLSKAEAEKKELSGQCSKLLSTKVELEKAHASLTLLLKEKQKRRRH 110
                  45566677777777777777777777777777777777777777777777777776665444433333556666666666666666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.63
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|13819_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.62
# Mc/sec: 574.79
//
Query:       MMETSP1174-20130828|13826_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 699.94
//
Query:       MMETSP1174-20130828|13820_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:01.23
# Mc/sec: 261.83
//
Query:       MMETSP1174-20130828|13821_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.2   0.0    3.4e-06   24.6   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW
    7.7e-05   19.9   0.0    0.00012   19.3   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.016   12.8   0.0      0.024   12.3   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.5e-09   3.4e-06       6     102 ..     112     207 ..     108     218 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.5e-09
    TIGR02081   6 ailelipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGveviqqdl.degLe.afedksfDvvvlsqtlqavrnteeiLdellRvg 102
                  a ++ +p +s v+D+GcG+G+ L + +d     g G + +++ v  c++rG+ev  +d+    L     d s  ++vl   + +  + ++++ e +Rv 
  MMETSP1174-20130828|13821_1 112 AFIRALPRHSLVVDVGCGNGKNLPACADI--GFGLGFDFSTSLVQICAERGLEVGAADAlALPLRsEVFDASLSIAVLHH-ISTRARRRQLIAETVRVV 207
                  56778999****************99765..4799*******************99885133343123355555666654.444455667777777775 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.9e-08   0.00012      35     140 ..     115     214 ..      86     230 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.9e-08
    TIGR01934  35 ieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfda.vtia..fGlRNvtdiekaLkelaRVlkpggrlv 140
                   +  +++ v+Dv +G G+   ++a       +g D+s++++++ +++        +e  +ada +Lp+++++fda ++ia  + +   +++++ + e +RV++ gg  +
  MMETSP1174-20130828|13821_1 115 RALPRHSLVVDVGCGNGKNLPACADIGF--GLGFDFSTSLVQICAERG-------LEVGAADALALPLRSEVFDAsLSIAvlHHISTRARRRQLIAETVRVVRVGGSAL 214
                  333468889*********9999888764..58***************6.......56789**************854555337888899999************99865 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.024      36     134 ..     121     217 ..     110     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
    TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekksfDlivSnlalQWldd...lsevlaelarvlkpgGllafst 134
                  + v d+GcG G   + l +  +    +  D+s +  +++ ++   +++ ++d+  lpl+ + fD   S ++l+ ++     ++++ae  rv++ gG ++f  
  MMETSP1174-20130828|13821_1 121 SLVVDVGCGNG---KNLPACADIGFGLGFDFSTSLVQICAERG--LEVGAADALALPLRSEVFDASLSIAVLHHISTrarRRQLIAETVRVVRVGGSALFYA 217
                  5699*******...6666666666679*************988..89***************************9762225799************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.77
# Mc/sec: 587.95
//
Query:       MMETSP1174-20130828|13831_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 192.24
//
Query:       MMETSP1174-20130828|13830_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-39  132.3   0.0    3.7e-35  119.9   0.0    2.6  1  TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00675  dcm: DNA (cytosine-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   0.0   9.1e-39   3.7e-35       7     329 .]      18     336 ..      15     336 .. 0.77

  Alignments for each domain:
  == domain 1    score: 119.9 bits;  conditional E-value: 9.1e-39
    TIGR00675   7 GiGGirlgleqagafklvfaseidkeavktyeanfkekvskgDitkieksdipdfdiLlgGfPCqsFSvagkrkGfedtrGtLffeivrilkekkPkvfllENVkgLvshdk..................grtfkviletleelGYkveykvlnakdFgvpQnReRiyivGfrkdendklafefpkpseksakkkrlkdlleesveleeklalteekknllnkllekrrkkekltkeqikslyksedkssilktlsakianlvkggksvevvklldklsesdaekvavvkkeriRrLtprEcarlqgFpddfefk.......vsksqlykqvGNsvvvpvieaiakel 329
                  GiGG+rlgle  g   +v+asei ++a  +y++ f+           +      + +L+ G     + va+   G +    +L+ e+vr+l+e +Pk+f++ENV gLv+                     g  f+ ++ ++e+ GY v ++++n+ ++ vpQnReR+yivG r  +    + +  + +     +++  d       le  +    ++++l +++ +k + +    ++ ++    + d + ++ tl  ++ n+ +++ ++  +  +d +    +  +a  +   +R LtprEc rl+gFp++f ++        s s+ y+++GN+v +pv+++i  el
  MMETSP1174-20130828|13830_1  18 GIGGFRLGLEALG-GTCVLASEISPYASAVYRSHFDSA---------T------ASCLIEGDVLDLYTVARV-LGWKIREXQLYRELVRVLHEARPKAFIFENVVGLVTAGGgwrgprpsgtagrrkvspGLVFNEMVAAFESAGYDVGFRIVNGRFW-VPQNRERVYIVGTR-SDLGCDEVQWDWYDA---VEDAGDDDKTVRSILEPAGSPAVAECELSSNQWAKTQGV--HAGNGFE--RARIDIDGKAPTLISSYRNIGSKTTKFIFE-EADGTR--RNGGSADASVLLPRFLTPRECCRLMGFPEHFPVPsvevdgdASVSHFYQAIGNAVIPPVVTSIGTEL 336
                  9***********9.*********************965.........2......334555555578999876.69999999*****************************999******************************************998.*************9.444444444444433...333333333333334555566666667666666666655..3444444..557788888999999777555555554444.223222..2222333555678*****************8888877778899********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1128.19
//
Query:       MMETSP1174-20130828|13833_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-58  194.4   1.0    1.1e-47  160.6   0.4    2.3  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.6e-41  139.7   3.4    3.3e-33  113.2   1.2    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.1e-35  119.1   1.8    4.6e-33  112.4   0.9    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.8e-32  110.6   0.7    8.6e-32  108.4   0.5    1.9  1  TIGR02415 23BDH: acetoin reductases
    1.6e-31  107.6   1.7    1.2e-26   91.6   0.6    2.1  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.9e-29  100.6   5.6    9.4e-25   85.2   3.1    2.3  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    4.3e-29   99.4   9.2    4.6e-27   92.8   6.4    2.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-28   98.1   7.5    1.3e-27   94.7   5.2    2.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    7.8e-23   78.5   4.2    1.5e-22   77.6   2.9    1.4  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    7.1e-15   52.6   4.2    4.8e-10   36.8   2.7    2.9  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.3e-11   42.1   1.7    1.3e-11   42.1   1.1    1.8  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.9e-06   24.7   0.0    4.5e-06   24.1   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
  ------ inclusion threshold ------
      0.012   10.0   0.4      0.059    7.8   0.2    1.8  2  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.4   3.4e-50   1.1e-47       1     206 [.       9     226 ..       9     240 .. 0.87
   2 !   32.2   0.0   5.9e-11   1.9e-08     195     238 ..     242     285 ..     237     286 .. 0.95

  Alignments for each domain:
  == domain 1    score: 160.6 bits;  conditional E-value: 3.4e-50
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg..eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGr...........iinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrl 206
                  a+vtGa+rgiG++ a+ l ++ga+v++++  +e++a+++++e+++ag++a+av+  v+d++  ++l++++ ++++  e+  +vnnAG   D+++  m++++wd++++  +++ f++++a+++ m    + +           ++n+ss  gl+Gn+gq+nYa++KaG++gltk+lakE +  +i++nava G+i+t mt++  e+   +++e  p  r+
  MMETSP1174-20130828|13833_1   9 AVVTGAGRGIGASCARILSQHGASVIVNDL-SETEAAAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDdkELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAKAEisagvplsdrcVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSYGEEGGGETVEVRPGVRV 226
                  79**************************88.5577999*********************************9986447889*****************************************997655433111223333347*********************************************************9999877777766665554 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 5.9e-11
    TIGR01830 195 kkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  ++i ++ pl r g+p+e aa v+ +as  asyitG++l+v GG+
  MMETSP1174-20130828|13833_1 242 QNISATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  678999*************************************9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   1.2     1e-35   3.3e-33       2     208 ..       8     226 ..       7     240 .. 0.82
   2 !   26.0   0.0   4.3e-09   1.4e-06     197     240 ..     242     285 ..     238     287 .] 0.95

  Alignments for each domain:
  == domain 1    score: 113.2 bits;  conditional E-value: 1e-35
    TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea..elGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmler.....gfG.....r.iinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrl 208
                  va+vtG+ +GiG++ ++ l ++G  v+ n  +++e+a+    e ++ g +   v + v++++  ++ ++   +  +  ++  +vnnaG   d++ + mt +qW+++++  +++ f + r     m+       + G     r ++n+ss  Gl+G +Gq+ny++akaG++G+tk+la+e    g+  n++a G i+t m+++  e+   + v+  P  r+
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEAAAV-VSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANhwDDKELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADakaeiSAGvplsdRcVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSYGEEGGGETVEVRPGVRV 226
                  89***************************9988777665.55666666777788899****999999998877224567888*************************************99988875411111344334443489*******************************************************99988877777666666665 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 4.3e-09
    TIGR01829 197 kkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                  ++i a+ P+ r g+p+e aa v+ +as  a+y+tG+tl+v GG+
  MMETSP1174-20130828|13833_1 242 QNISATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  67999*************************************96 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.9   1.5e-35   4.6e-33       3     187 ..       8     205 ..       6     214 .. 0.91
   2 !    5.2   0.0    0.0075       2.4     222     252 ..     255     285 ..     225     287 .] 0.89

  Alignments for each domain:
  == domain 1    score: 112.4 bits;  conditional E-value: 1.5e-35
    TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldi..LvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgw.....Gr......iiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpL 187
                  va+vtGa+ Gig+ +a+ l ++Ga+v+vndl+e +a+a+ +e+++agge+la++  vt+++  ++l++++a+++ + ++  +vnnAG    +       +++++i+a ++t++f++ raa   m+++       G+      ++n++s+ gl +   +  Y +aK g+vGltK+lA+E    gi++na++ g + t +
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEAAAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDDKELryVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAKaeisaGVplsdrcVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRM 205
                  89**********************************************************************9987775449******99999999****************************9875412222423334448**************************************************99987 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0075
    TIGR01963 222 tveevaelalflasdaaaqitGqalsldgGw 252
                  +++e a+ ++ +as +a  itG +l++ gG 
  MMETSP1174-20130828|13833_1 255 HPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  689999***********************95 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.5   2.7e-34   8.6e-32       2     251 ..       8     285 ..       7     287 .] 0.81

  Alignments for each domain:
  == domain 1    score: 108.4 bits;  conditional E-value: 2.7e-34
    TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklG..eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.....G......kiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeidek....laela.......g..keigekl...eefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                  va+vtGa++GiG + a+ L + G +v+v dl e +a+++++e++++g++a+av   v+d +  e+++++a++++   el  +vnnaG    +  +++t+++ + + +  +++ +   +aaa+ f + + k     G       ++n +s +g +g+  +  y+++k  v glt+t ake  + gi  na a G++ t m+++  e+    ++e+        g   ++++++   +++s +  l r  +P++ a+ v  +as  + yitG ++ v GG+
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEAAAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDdkELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAAT-FMRADAKaeisaGvplsdrCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSYGEEgggeTVEVRpgvrvqqGipDSVAKAWmnpQNISATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  89**********************************************************************997226889******9888778899*************998776666665.5544444111113222222379******************************************************988766422225554311111112122233333222667888899**********************************9 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.6   3.8e-29   1.2e-26       7     192 ..       8     207 ..       4     216 .. 0.88
   2 !   14.8   0.0     1e-05    0.0032     202     244 ..     242     284 ..     227     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 91.6 bits;  conditional E-value: 3.8e-29
    TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvgisels..etqekvealGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqG..........rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnte 192
                  va+vtGa +G+G + a  l++ Ga ++  + se++     ++++a G ++l++   ++d++  ++l+++a+++ +  ++  +vnnaG +  + a  +++ +wd++l   + a f l++a+a  + ++           +   ++n++s   + G i    y+++k +v+Gltk+la+ew   gi+ na+a G ++t  t 
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEaaAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDdkELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAkaeisagvplSDRCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTS 207
                  79*************************9887765511567899**************************999987558999*************************************9986554444223322266555679*****************************************************9886 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 1e-05
    TIGR01832 202 aaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                  ++i +  P +r G+p++ a  ++++as  ++y++G++l v GG
  MMETSP1174-20130828|13833_1 242 QNISATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGG 284
                  5788889***********************************9 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   3.1     3e-27   9.4e-25       2     190 ..      10     209 ..       9     239 .. 0.82
   2 !   14.3   0.0   1.3e-05    0.0042     199     238 ..     246     285 ..     231     286 .. 0.90

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 3e-27
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadia..ehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirark.....gg....r.iitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaev 190
                  +vtga rgig + a  l+  g  + v   s +++a ++v++i+a gg+a  +   v+d     +++++  +  ++     vv nag   d+   ++++++wda++   + + + + +     m    k     g     r ++ ++s sg+ gn gqvny++akag++g tk+la e     i  n +a g+i t m ++ 
  MMETSP1174-20130828|13833_1  10 VVTGAGRGIGASCARILSQHGASVIVNDLS-ETEAAAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANhwDDKELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAKaeisaGVplsdRcVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSY 209
                  69**********************998776.578889*********************98887777654441144566779******************************999999887766432221112121333333789*****************************************************8765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.3e-05
    TIGR01831 199 klvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                   + p+ r g+++e aa +  + s  a+y+t   + v ggm
  MMETSP1174-20130828|13833_1 246 ATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  578************************************9 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   6.4   1.5e-29   4.6e-27       5     248 ..       8     285 ..       5     287 .] 0.80

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 1.5e-29
    TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdv..lvnnag..wdvlkpflktekaewerliainltgalymhhavlkgm.....verkag......rivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseae..k.............peklieaftr......aiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                  va+vtg g gig++  r +++ ga v v dl+   a  v ++i+++gg+a ava  +td +  +  + +a +     ++  +vnnag  wd +   + t+  +w+ ++a  +t  + +  a +  m      e  ag       +vn++s ++  g  g+  ya+ k g+v ++ktla+e    gi  n v  g   t +   + +e++                p+ + +a+ +      + pl r g+pd+ a  ++++as  a++itg  l v+gg+
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEAAAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDDKELryVVNNAGflWDSIAH-TMTD-DQWDAILACHITAPFRLCRAAATFMradakAEISAGvplsdrCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSYGEEGGgeTvevrpgvrvqqgiPDSVAKAWMNpqnisaTTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  79**********9999999******************************************999999888888776654339*****88999875.4454.58*********9988888887766622222233333333332589****************************************************999988765431112222222222222677777764322222268************************************8 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   5.2   4.1e-30   1.3e-27       5     264 ..       8     285 ..       5     286 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 4.1e-30
    TIGR03971   5 valitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG..rldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPal.....ierknGG.....siiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfa..............kreeaaraflpalpvs......glvepedvadvvawlasdesryitGaqlavdaGa 264
                  va++tGa rG G + a  l+++Ga +i+ dl e  +             +  ++ ++a+G  +la  + v + +  ++ ++ + +++    l  vv+naG l  + a+ ++++qWd +l   ++  ++ ++a+   +      e   G       ++ vss++gl++  g++ ya+ak G+vgltktla+e ++ gir n++    ++t+m+++    e                   +++a+a+++ + +s         +p++ a+ v+ +as+ + yitG+ l+v  G+
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVNDLSETEA-------------AAVVSEIQAAGGEALAVAGSVTDSDFPEHLMQTAANHWDdkELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMradakAEISAGVplsdrCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMISTRMTSSY-GEEGGGetvevrpgvrvqqgIPDSVAKAWMNPQNISattplaRPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  9**************************999987664.............445899******************999999999999986336889***************************************998843322222333222222699*******************************************************842.222222355567788887655578899999999998665444344699************************9885 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   2.9   4.8e-25   1.5e-22     415     670 ..       7     285 ..       4     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 4.8e-25
    TIGR02632 415 rvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG..vdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqg...lggn.......lvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl.rGsgifagewrek.raaaygie...........adkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGv 670
                   va+vtG++ GiG   ar l ++Ga v++ dl + +a+av  e++     ++a+a+   vtd +  +  ++ +a  +    +  vvnnaG    +  +  ++++Wd  l+  +t  f ++r aa  +r+ +   +++        +v ++s  ++  + +++ y++aka  + l ++la e ++lgir n+va   +  r ++ + +e + +      g+            a    +     + l r+  p++ a  v+l+as   +  tG++++v +G+
  MMETSP1174-20130828|13833_1   7 GVAVVTGAGRGIGASCARILSQHGASVIVNDLSETEAAAVVSEIQ--AAGGEALAVAGSVTDSDFPEHLMQTAANHWDDkeLRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAkaeISAGvplsdrcVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGMIStRMTSSYGEEGGGEtVEVRPGVRvqqgipdsvakAWMNPQNISATTPLARPGHPDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  69******************************************9..4557899999******************998622667*********99999999**************************9875222333212223337999*******************************************98765313344444333322022333333444553443321111233345567888888888888888888888888888888888885 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   2.7   1.5e-12   4.8e-10       3     205 ..       8     200 ..       6     212 .. 0.78
   2 !   11.3   0.0   9.1e-05     0.029     233     262 ..     256     285 ..     218     287 .] 0.78

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.5e-12
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdv..lvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrq.kgtraelrs....snlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl 205
                  +a+vtGa + iG s a  l q+G  v++    s+++a+++++e+ a+  + a+ v + ++ s    +  e++++++  ++   ++  +vnna   + + + +             + q   ++ +   ap+ l +a a  + ++ +ae+ +    s+  +vn+  +   +  +g   y+ ak  ++Glt++ a e  +l+ir n+va G+
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQHGASVIVN-DLSETEAAAVVSEIQAA-GGEALAVAGSVTDS----DFPEHLMQTAANHWDDKELryVVNNAGFLWDS-IAHTM----------TDDQWDAILACHITAPFRLCRAAATFMrADAKAEISAgvplSDRCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLGIRCNAVAFGM 200
                  89**********************99997.578888999999*9987.57789999988877....568999********977653378888755543.32222..........23344556677788999999888764313555554432222567799*9999999999***********************************996 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 9.1e-05
    TIGR02685 233 aeqiadvviflvskkakyitGtiikvdGGl 262
                   ++ a  v+++ s+ a yitG ++ v GG+
  MMETSP1174-20130828|13833_1 256 PDEAAAGVMLMASPYASYITGHTLEVTGGM 285
                  4566778999*******************7 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   1.1   4.1e-14   1.3e-11       6     191 ..       7     205 ..       2     220 .. 0.75
   2 ?   -1.1   0.0       0.6   1.9e+02     229     257 ..     259     287 .]     242     287 .] 0.74

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 4.1e-14
    TIGR03325   6 evvlvtggasglgralvdrfvaegarvavldksaag....leeleaahgdkvvgvegdvrllddhkeavarcveafg..kldtlipnag.iwdysta.lv.dipddrideafdevfeinvk..gylla.vkaalpalva.srgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                   v++vtg + g+g +        ga v v d s+ +    + e++aa g++ ++v+g v   d  ++ ++   + +    l  +++nag +wd  ++ +  d  d  +   +   f++     +++ a +ka ++a v  s  +v+   s +g++ n g + y++ak  vvgl k la e++p  +r n va g +st +
  MMETSP1174-20130828|13833_1   7 GVAVVTGAGRGIGASCARILSQHGASVIVNDLSETEaaavVSEIQAA-GGEALAVAGSVTDSDFPEHLMQTAANHWDdkELRYVVNNAGfLWDSIAHtMTdDQWDAILACHITAPFRLCRAaaTFMRAdAKAEISAGVPlSDRCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGPLgIRCNAVAFGMISTRM 205
                  599**********999999999********98865411115666665.566789***9999888888888888777522588899****669975441331334444444556667775431144444379999987752666777777889*******************************66*********999865 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.6
    TIGR03325 229 tgayvffatrgdtvpltgavlnydgglgv 257
                  + a v++ +   +  +tg  l+  gg+g+
  MMETSP1174-20130828|13833_1 259 AAAGVMLMASPYASYITGHTLEVTGGMGI 287
                  4555666666778889***********96 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   4.5e-06       2     207 ..       8     212 ..       7     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.4e-08
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaev.salsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkel......qglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvree 207
                  +++vtGa rG+G + a+ l +    +g  +++   +++       ei+a   +al v   s+  +  +  e+l+++     ++++ e   ++nnaG l d    +      + +   + +  + l   +++++++  ++      + +++ vvn+ss + ++   +   Y ++ka    + + La e     ++    a G++ t m+s   ee
  MMETSP1174-20130828|13833_1   8 VAVVTGAGRGIGASCARILSQ----HGASVIVNDLSETEAAAVVSEIQAAGgEALAVAG-SVTDSDFP--EHLMQTA--ANHWDDKELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAATFMRADAKAeisagvPLSDRCVVNVSSTSGLHGNIGQVNYATAKAGVVGLTKTLAKEWGpLGIRCNAVAFGMISTRMTSSYGEE 212
                  689************998888....7888888888888888899999964404455544.44445555..5666654..4566666667899*******97555543344577888888888888889999**9866544554445678***************************************977899999***********987666 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2   0.00019     0.059    2075    2193 ..      36     172 ..      16     184 .. 0.75
   2 ?    2.9   0.1    0.0053       1.7    1904    1933 ..     165     196 ..     151     207 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00019
    TIGR02813 2075 pvlssleiaqalaaikavGasaeylsvdvsdsa...svaatvaplnkllditGiihGaGvladkfiedktleelnavygtkvdGlesllaal.......naekv........kllalfssaaGfyGntGqsdyaisn 2193
                     ls+ e a  ++ i+a+G++a  ++  v+ds+    + +t a+     ++  ++  aG l d   +  t ++++a+ +  ++    l  a           ++        + ++  ss++G++Gn Gq +ya + 
  MMETSP1174-20130828|13833_1   36 NDLSETEAAAVVSEIQAAGGEALAVAGSVTDSDfpeHLMQTAANHWDDKELRYVVNNAGFLWDSIAHTMTDDQWDAILACHITAPFRLCRAAatfmradAKAEIsagvplsdRCVVNVSSTSGLHGNIGQVNYATAK 172 
                   55899999***********************9822234455555555569*******************************9985554433211111112223322223333568999***************9875 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0053
    TIGR02813 1904 ivkaelnqaalaGlvktlnhewsa..vfcral 1933
                   +v+    +a+++Gl+ktl++ew    + c a+
  MMETSP1174-20130828|13833_1  165 QVNYATAKAGVVGLTKTLAKEWGPlgIRCNAV 196 
                   45555678999999999999998633555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.54
# Mc/sec: 701.50
//
Query:       MMETSP1174-20130828|13834_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1225.13
//
Query:       MMETSP1174-20130828|13837_1  [L=922]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.90
# Mc/sec: 1352.16
//
Query:       MMETSP1174-20130828|13840_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1173.56
//
Query:       MMETSP1174-20130828|13842_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1026.58
//
Query:       MMETSP1174-20130828|13843_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 620.35
//
Query:       MMETSP1174-20130828|13847_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 303.97
//
Query:       MMETSP1174-20130828|13846_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.7   0.6      0.011   13.8   0.4    1.5  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.4   2.6e-06     0.011      68     143 ..     208     288 ..     159     291 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.6e-06
    TIGR02009  68 ieqlaerknelyrellr.ltgaevlpgienlleelkkkkiavalgsssknak.aiLaklgltdlf..davvdasevke.gK 143
                  +++  er  + ++e  r   +++ ++++e++ ++ +++ ++v ++s+  na+  iL +++l++ f  +   d++++ke g 
  MMETSP1174-20130828|13846_1 208 TKEFYERMIKFLHESPRaALVEKNMKTVESMSDKTTANMLKVQIASHGSNAEtNILMRTALQNSFfsASSTDGRMIKEqGE 288
                  34455555555555555455677899*********************9998636999999998763334578899988555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 735.72
//
Query:       MMETSP1174-20130828|13850_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.70
# Mc/sec: 135.76
//
Query:       MMETSP1174-20130828|13844_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-63  209.3   0.0    1.3e-62  208.6   0.0    1.2  1  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID
    1.9e-05   22.4   1.4     0.0066   14.1   1.2    3.1  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
     0.0012   17.5   0.2     0.0024   16.6   0.1    1.4  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.019   13.0   0.6       0.16    9.9   0.6    2.1  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
      0.039   11.9   0.0      0.092   10.7   0.0    1.6  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0   1.6e-65   1.3e-62       5     180 ..     145     324 ..     141     334 .. 0.93

  Alignments for each domain:
  == domain 1    score: 208.6 bits;  conditional E-value: 1.6e-65
    TIGR02245   5 rveeykikllnppregkkllvldidytlldhrs..aaedvvelmrpylhefltaayeeydiviwsatsmkwielklkelGvltnpnykitflldslamitvqterrg...vvdvkplgviwaklkefyskkntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiae 180
                     + +i+++++pr+gk+llvld+d+tlld+      ++++e++rpyl+efl+a +  yd+viws+ts++w+e+k++elG+l+np+y+i+f+ld++ m+++ ++r+g   +++vkpl++iw+k++++ s +nt ++ddl rnf++np  G+ki+ + +a+   ++d+el  l+ yl+  a+
  MMETSP1174-20130828|13844_1 145 FTAKTDISVISEPRPGKQLLVLDLDHTLLDFSKhgQLQNTMEMQRPYLDEFLSAVFTSYDLVIWSQTSWRWLEVKMTELGMLNNPRYRICFVLDKTSMFSIISQRKGkdfKHQVKPLQLIWSKFAHW-SAENTFHVDDLGRNFALNPSCGVKIRAYYRAKDPMGEDRELPLLAAYLLFRAN 324
                  556788************************9751146899******************************************************************99999**************99.888*********************************************87666 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   1.2     8e-06    0.0066      38      65 ..     182     209 ..     161     217 .. 0.70
   2 ?    1.4   0.0     0.061        50     115     149 ..     275     313 ..     252     327 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8e-06
    TIGR02251  38 ilvyVlkRPyvdeFlerlsklyelvvfT 65 
                     + ++RPy+deFl+++   y+lv++ 
  MMETSP1174-20130828|13844_1 182 QNTMEMQRPYLDEFLSAVFTSYDLVIWS 209
                  3334478*******************96 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.061
    TIGR02251 115 kvviiDnsplsyslqpeNaipiksfisde....nDeeLl 149
                  ++  +D+   +++l+p+ +++i+++  ++    +D+eL 
  MMETSP1174-20130828|13844_1 275 NTFHVDDLGRNFALNPSCGVKIRAYYRAKdpmgEDRELP 313
                  566799999****************87541122455555 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.9e-06    0.0024       2     125 ..     163     286 ..     162     289 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.9e-06
    TIGR01681   2 vivfDlDnTLwtdeedvvkedpiedieltevtikeirdvLqelkknGvllalaSknddeevakellkikedYfd.......vilpkaelfldltigkrlpKskrlveilkkln....svlklksilfvDDlavnn 125
                  ++v+DlD TL +  +  + ++    +e++   ++ + ++L++  ++   l+++S+++ +  + ++ ++     +       ++l k+++f+ +++  +  K+ ++  + ++l       +  ++++ vDDl +n+
  MMETSP1174-20130828|13844_1 163 LLVLDLDHTLLDFSKHGQLQNT---MEMQ---RPYLDEFLSAVFTS-YDLVIWSQTSWRWLEVKMTELGML--NnpryricFVLDKTSMFSIISQR-K-GKDFKHQVKPLQLIwskfAHWSAENTFHVDDLGRNF 286
                  79**********9777666665...3344...5679******9999.99****999444444455555442..24667778777799999988877.3.344444333333334566799999*******99886 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0002      0.16       6      32 ..     161     187 ..     158     201 .. 0.85
   2 ?    2.2   0.0     0.047        39      57      82 ..     185     210 ..     177     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
    TIGR02250   6 kLvLvlDlDqtlihttkeselseeekk 32 
                  k  LvlDlD+tl++ +k+ +l++++++
  MMETSP1174-20130828|13844_1 161 KQLLVLDLDHTLLDFSKHGQLQNTMEM 187
                  5679***********999999988773 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.047
    TIGR02250  57 lvklRPfvkeflkkvsklyelhvytm 82 
                  +   RP+++efl+ v   y+l ++  
  MMETSP1174-20130828|13844_1 185 MEMQRPYLDEFLSAVFTSYDLVIWSQ 210
                  4457***************9999865 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011     0.092       2     134 ..     163     295 ..     162     301 .. 0.84
   2 ?   -3.2   0.0       2.1   1.7e+03      22      45 ..     360     383 ..     354     383 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
    TIGR01662   2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgk....esveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGla 134
                  l+vlDlD tL d +++ + ++  e+ +   d++ ++    y++vi +  s   r++     ++ ++++   +++  l+   ++ i+ +++++++ K + + l+ + +++ + +a++++ v D +++   +   +G++
  MMETSP1174-20130828|13844_1 163 LLVLDLDHTLLDFSKHGQLQNTMEMQRPYLDEFLSAVFTSYDLVIWSQTS--WRWLevkmTELGMLNNPRYRICFVLDKTSMFSIISQRKGKDF-KHQVKPLQLIWSKFAHWSAENTFHVDD-LGRNFALNPSCGVK 295
                  79*********999999*********************************..898898888888888888888888887888888887444444.556888999999999999999999988.88888887777776 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.1
    TIGR01662  22 deaelypevidalaelkkeGykvv 45 
                   ++ ++++  ++la+ +++G +v+
  MMETSP1174-20130828|13844_1 360 GWRAIAEKLVQELASSQRQGGTVM 383
                  688889999999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 912.35
//
Query:       MMETSP1174-20130828|13848_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 902.33
//
Query:       MMETSP1174-20130828|13853_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1007.29
//
Query:       MMETSP1174-20130828|13851_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-55  185.3   0.6    3.1e-53  178.7   0.4    2.0  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    0.00012   19.5   0.2      0.023   12.0   0.0    2.3  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    0.00046   17.0   0.1      0.081    9.6   0.1    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0023   15.0   0.1     0.0038   14.3   0.0    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.019   12.2   0.1      0.041   11.1   0.0    1.5  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.021   11.8   0.2      0.044   10.7   0.0    1.6  2  TIGR00750 lao: LAO/AO transport system ATPase
      0.024   12.3   0.1       0.07   10.8   0.0    1.7  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
       0.03   11.3   0.6       0.67    6.9   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
      0.067   10.8   2.6       0.58    7.8   1.8    2.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.4   6.7e-56   3.1e-53       2     340 ..       7     335 ..       6     337 .. 0.87

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 6.7e-56
    TIGR02475   2 akipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllaree......eldhilietsGlalpkplvqaf.qwpeirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGlga.aaeedlearkshhdleeeeeehdhdefdsvvvdlgevadvdalaerleklveee..dvlrikGfvevegkplrllvqavGkrvdsyydrawkaeearstrlvviGlkdldeaaiaa 340
                  +++pvtv+tGflG+Gkttl++h+l   +G+riavi nefG++ id ++lk+   e  +e+ei+e  nGc+cc v  d++  l++l +r +      +ld +++et+G+a p p+ q+f    ++++   +dg+v+vvd++ + +         l++++        e  ++e    qla ad +ilnk dl+  +++ k  +e    ++r   +  +++ ev+ + +lG+ a + ++ l + +   + ++++  hd + + s+ ++++   d+ a++  +++l++e+  d++r+kG ++ ++   r +  +v   ++  y  +w a+e+r  ++v iG++ ld ++++a
  MMETSP1174-20130828|13851_1   7 ERVPVTVLTGFLGSGKTTLLNHILTAKHGQRIAVIENEFGSVAIDDSLLKKNMKE-HTEDEIIETLNGCVCCNVRGDLINFLKTLAERIDqgaggfRLDAVILETTGMADPSPVAQTFfADETVQEYYRLDGIVTVVDAKHIEQH--------LNEEK-------PEGTINESV-QQLAFADRIILNKVDLVPEEEVLKNLEERIRSINRFAPLTRCKNAEVSIDSVLGIHAfNLKKTLFENPEFLN-DDGNVSHD-QSVSSFSINVTGEVDLGAMTGWINELLSEKgdDLYRMKGIIAFKDVDERYVYHGVHMLLSGRYTEPWGADEERCCKIVFIGKN-LDSDELRA 335
                  69*************************************************9665.8899********************999999996523334469******************972456799999**********8765322........21111.......223344433.59***************9999888888888899**********************87367888999999888.56677777.479********99*************9875349************************************************99.**999987 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.1e-05     0.023      34      78 ..      13      56 ..       5      96 .. 0.76
   2 !    5.3   0.0    0.0058       2.6     154     189 ..     166     200 ..     154     218 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.1e-05
    TIGR00073 34 nllssiGsGktlllekliealkkevkiavieGDlitkaDaeRlrk 78
                  l +  GsGkt+ll+++++a++   +iavie +  + a  + l k
  MMETSP1174-20130828|13851_1 13 VLTGFLGSGKTTLLNHILTAKHG-QRIAVIENEFGSVAIDDSLLK 56
                 566789**********9998877.89****998877654444444 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0058
    TIGR00073 154 ifkeadlilinkvdlveavdadvekvkadvkkinPe 189
                   ++ ad i++nkvdlv+  ++ ++++++ +++in  
  MMETSP1174-20130828|13851_1 166 QLAFADRIILNKVDLVPEEEV-LKNLEERIRSINRF 200
                  5678************98665.67778888887754 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0039       1.8     187     213 ..       7      33 ..       3      66 .. 0.87
   2 !    9.6   0.1   0.00018     0.081     261     326 ..     127     193 ..     103     205 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0039
    TIGR03156 187 sevptvalvGYTNaGKstllnaltkae 213
                  ++vp+  l G+  +GK+tlln++ +a+
  MMETSP1174-20130828|13851_1   7 ERVPVTVLTGFLGSGKTTLLNHILTAK 33 
                  6789999***************98874 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00018
    TIGR03156 261 aTLeevaeadlllhvvDasdeeaeeqieaveevLee.lgaeeipvllvlNkidkleeeeleeleekk 326
                   T +e  + d ++ vvDa + e++ + e+ e +++e ++  +    ++lNk+d+++eee+ ++ e++
  MMETSP1174-20130828|13851_1 127 ETVQEYYRLDGIVTVVDAKHIEQHLNEEKPEGTINEsVQQLAFADRIILNKVDLVPEEEVLKNLEER 193
                  49999**************9988888887777665526666778889*********99988877765 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.3e-06    0.0038     182     213 ..      13      43 ..       6      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.3e-06
    TIGR03819 182 lvsGgtGsGkttLLsalLalvaedeRivlved 213
                  +++G  GsGkttLL+ +L++ ++ +Ri ++e+
  MMETSP1174-20130828|13851_1  13 VLTGFLGSGKTTLLNHILTA-KHGQRIAVIEN 43 
                  678999************85.6789*****97 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.9e-05     0.041      46      74 ..      12      40 ..       6      60 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.9e-05
    TIGR03015 46 ilitGevGaGkttlvrnllkkleaekvvl 74
                  ++tG +G+Gkttl+ ++l  ++ +++ +
  MMETSP1174-20130828|13851_1 12 TVLTGFLGSGKTTLLNHILTAKHGQRIAV 40
                 699*****************999888765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.6e-05     0.044      38      95 ..      13      66 ..       6     117 .. 0.79
   2 ?   -3.2   0.0       1.7   7.8e+02     233     261 ..     147     173 ..     136     200 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.6e-05
    TIGR00750 38 GltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsllGDrlrlqelatdp 95
                  ltG+ G Gk tl++++ +   ++G+++avi  + +s     sll  +  ++e++ d+
  MMETSP1174-20130828|13851_1 13 VLTGFLGSGKTTLLNHILT--AKHGQRIAVIENEFGSVAIDDSLL--KKNMKEHTEDE 66
                 58*************9976..589*******99999999888888..45566666655 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.7
    TIGR00750 233 ieehkkvlkksGkleekrrersveelkkl 261
                  ie+h +  k  G ++e +++     + ++
  MMETSP1174-20130828|13851_1 147 IEQHLNEEKPEGTINESVQQLA--FADRI 173
                  5555555555555555554322..22222 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.07      23      43 ..      10      30 ..       4      43 .. 0.82
   2 ?   -3.7   0.0       4.7   2.2e+03      89     113 ..     129     153 ..     126     161 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
    TIGR00150 23 tvvlLkGdlGaGKttlvkgll 43
                  v +L+G lG+GKttl+  +l
  MMETSP1174-20130828|13851_1 10 PVTVLTGFLGSGKTTLLNHIL 30
                 5889************98766 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.7
    TIGR00150  89 leeylekegiilvEWpekkleklpe 113
                  ++ey++ +gi+ v  +++++++l e
  MMETSP1174-20130828|13851_1 129 VQEYYRLDGIVTVVDAKHIEQHLNE 153
                  5788888888888777776666654 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.026        12     166     197 ..      20      51 ..       9      70 .. 0.79
   2 ?    6.9   0.0    0.0015      0.67      79     120 ..     158     197 ..     124     224 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.026
    TIGR03597 166 VGKSsliNkllklnkgkkkvittSkfpgTTld 197
                   GK +l+N++l+ ++g++ ++   +f    +d
  MMETSP1174-20130828|13851_1  20 SGKTTLLNHILTAKHGQRIAVIENEFGSVAID 51 
                  6************9999988877777666665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0015
    TIGR03597  79 gslikelkrfvkenkvllvvNKidllpksvklekikewlkke 120
                  g++ +++++++ + +  ++ NK+dl+p++  l++++e++++ 
  MMETSP1174-20130828|13851_1 158 GTINESVQQLAFADR--IILNKVDLVPEEEVLKNLEERIRSI 197
                  344444444433333..678******************9875 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.8    0.0013      0.58       7      27 ..      13      33 ..       8     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0013
    TIGR00231  7 vivGhvdvGKstLlnsllknk 27
                 v+ G+ ++GK+tLln +l+ k
  MMETSP1174-20130828|13851_1 13 VLTGFLGSGKTTLLNHILTAK 33
                 678999***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.81
# Mc/sec: 705.57
//
Query:       MMETSP1174-20130828|13854_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1044.18
//
Query:       MMETSP1174-20130828|13855_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1080.66
//
Query:       MMETSP1174-20130828|13856_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 409.50
//
Query:       MMETSP1174-20130828|13859_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 502.57
//
Query:       MMETSP1174-20130828|13857_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 606.44
//
Query:       MMETSP1174-20130828|13861_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.70
# Mc/sec: 1463.19
//
Query:       MMETSP1174-20130828|13867_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 162.45
//
Query:       MMETSP1174-20130828|13865_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   38.7  14.5    1.5e-10   38.2  10.1    1.2  1  TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family


Domain annotation for each model (and alignments):
>> TIGR00785  dass: transporter, divalent anion:Na+ symporter (DASS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  10.1   3.6e-14   1.5e-10     260     438 ..      15     205 ..       2     215 .. 0.51

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 3.6e-14
    TIGR00785 260 llwifgksegik....asvvallavvlllllgivtwkdikknkvaWnvlvlfgglitlagvLkksGfikwlseklvkileglsptivvlllvvlfvlllyefaSntAltallvpifvsvasvl.......gvplellalalalsaslagillpvatppna...iv...YgsGyvkikdmwkvGlilgivslivlll 438
                  llw ++ +++        +v+l  ++l +  +++t+ d ++   +W++l+l+gg  +l+ + + s +++ +  ++  +l  ++  + + + v++f+    +f+S + ++ +lvpi+v +a+v        gv    l++  a+++s a + lp++  pn+   +v   + + y+k+kd+  +Gl+ +i+ ++ +  
  MMETSP1174-20130828|13865_1  15 LLWSMSAFTLPTlfgdLGIVSLCFLALAFGSNLLTEVDLNSF--SWQTLILLGGSSVLGKAVTASQLLNRIVSNILPFLPTNP--AFLSFSVFTFAAGCATFVSHSVAAIILVPIIVDIAAVAdeeqgagGVLFVSLSICSAFAISAA-MTLPFSSFPNVnslMVmddHKETYLKTKDFFIAGLPASIIAVLCIQG 205
                  444444444433333345556666666666666666665555..566666666666666555555555555555555553333..444555555555566666666666666666666655444555555555555555555555555.66666655554222222223445666666666666555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 795.60
//
Query:       MMETSP1174-20130828|13864_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1127.65
//
Query:       MMETSP1174-20130828|13868_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1028.84
//
Query:       MMETSP1174-20130828|13866_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2152.44
//
Query:       MMETSP1174-20130828|13870_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 1987.38
//
Query:       MMETSP1174-20130828|13873_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1333.09
//
Query:       MMETSP1174-20130828|13876_1  [L=1083]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1083 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 2165.82
//
Query:       MMETSP1174-20130828|13878_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-39  133.6   0.0    1.5e-39  133.2   0.0    1.2  1  TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase


Domain annotation for each model (and alignments):
>> TIGR02150  IPP_isom_1: isopentenyl-diphosphate delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   3.6e-43   1.5e-39       1     155 [.      27     230 ..      27     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: 133.2 bits;  conditional E-value: 3.6e-43
    TIGR02150   1 vilvdendnvigtaskaevhkketi.......lHlAfSvflfdeegklLlqrraasKitfPgvwtNscCsHPlkgela.................aaairrllaeLgitaeevd...lkvltrlsYrAas.....asGehevdyilfark....aevtvnpn.devaevkyvsleelkellakpkag............lsPWl 155
                  +i+vd nd+v g+++k++vh+ +++        H+AfS flf+e+ +lLlq+r ++Ki+fP  w+N+cCsHPl + ++                 +aa r+l++eLgi    ++   ++++t+++Y+A+      ++Gehe+dyil++++     e+++++n  ev ++k+++++  ++  ++   +            +sPW+
  MMETSP1174-20130828|13878_1  27 CIVVDTNDDVAGQDTKKNVHLIDGPcmkpgglPHRAFSAFLFNENWELLLQKRCDQKILFPLHWANTCCSHPLADGATflgdiingeqdgstgtiQAARRKLKQELGIDPVAIPassFQFVTKVHYKAPLpgpdpKWGEHEIDYILLCQRpqaeIERSLEINpGEVCDIKWLDQDACRAFVEASGDPngsdaaaregewISPWF 230
                  9******************************88*****************************************7777789999*****************************9***************99***************9987332235567788789999*******99988765433345666677778778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1174-20130828|13875_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-91  303.5   0.2    5.2e-91  303.3   0.1    1.0  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.3   0.1   1.3e-94   5.2e-91       2     413 .]      10     450 ..       9     450 .. 0.92

  Alignments for each domain:
  == domain 1    score: 303.3 bits;  conditional E-value: 1.3e-94
    TIGR03026   2 kiavvGlGYvGlplaallaek..gheVvgvDidkekveklnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitVpTplkkeg.....eldlsavesaaeeiakvlkkgaivvlkSTvppgtteevvkpileklsglklgedfevavnPEflreGnavedllnpdriviG......eteeaseavaelYesiiekavvlvtsietAeliKlaeNtfravkiafiNelariceklgidvkevieaagldprigknflrpGlGvGGsClpkDplaLlakakelgve..aelieaareiNdsqpervvekvkkal.kklkgkkvlvlGlafKantdDvReSpaldiiekLkekgakvkayDPlveeeev.....kaaesee.................vsdleealkeadavviltehsefkeldlekiks.lkkaklvvdtrn 413
                  ki+ +G+GYvG p++a++a++   ++V++vD++++++++ n+ + pi epgl e++++  + ++l +tt+ie++i+ead+i+i+V+Tp+k++g     +++++  e  a++i+kv + ++ivv kSTvp++t + v  ++l+     + g +f+v +nPEfl eG+av dl+ p r+ iG      e  +a+e++ ++Y++ + ++++l+t++ ++e+ Kl++N+f+a +++ iN ++ +ce+ ++dv+ev +a++ d+rig +fl++++G+GGsC+ kD+l L++  ++lg +  ++  +++  +N+ q++r  + + +++ +++++kk++v+G+afK++t D+Re+ +  + + L ++ a v++yDP+v+ + +           +                   d + a+++a+a+ ilte++efk ld++++ + + k ++++d+rn
  MMETSP1174-20130828|13875_1  10 KICCMGAGYVGGPTMAIIAANcpDIKVTVVDLSERQIAAWNSAELPIFEPGLPEVVERV-RGKNLFFTTNIEQEIAEADIIFISVNTPTKQHGigagrAANIKNCELCARTIVKVSTTDKIVVEKSTVPVRTADAVN-RVLST---NDKGLNFQVLSNPEFLAEGTAVDDLQSPGRVLIGgtlhtpEGMAAIEKLVSVYQHWVPREKILTTNVWSSEVSKLVANAFLAQRVSSINSISALCEATDADVTEVSRALAFDDRIGSKFLNASVGFGGSCFQKDILNLVYICESLGLQevSDYWNQVVLMNEYQKRRFSKVIVSRMfNTITSKKIAVYGFAFKKDTGDTRETASAFVCRDLLDERAIVHVYDPQVKRDVMltemdY-----TlkvneetysglddhlitSPDPYTAAEGAHAIAILTEWDEFKGLDYQRLYTaMIKPAFIFDGRN 450
                  89****************99755799******************************888.6667**************************976555558999999***************************99998.66666...47899**************************99978733334568889999*****99****************************************************************************************998889*********************9999*************************************************9998543330.....344566678999****99999***************************999677888999*997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1979.84
//
Query:       MMETSP1174-20130828|13879_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|13880_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-47  158.9   0.2    2.4e-47  158.5   0.2    1.0  1  TIGR01752 flav_long: flavodoxin
    1.3e-11   43.1   0.3    1.9e-11   42.5   0.2    1.3  1  TIGR01753 flav_short: flavodoxin
    0.00022   19.0   0.1    0.00033   18.4   0.0    1.3  1  TIGR01754 flav_RNR: putative ribonucleotide reductase-associated flavodoxin
     0.0022   15.6   0.2      0.004   14.8   0.2    1.3  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.2   2.3e-50   2.4e-47       4     164 ..      45     206 ..      42     208 .. 0.93

  Alignments for each domain:
  == domain 1    score: 158.5 bits;  conditional E-value: 2.3e-50
    TIGR01752   4 ifygsdtgntekiaekiekelgesavdvvnikkasaeeleaydvlilgtptwgaGelq....edWeeil.skleeldlkgktvalfGlGdqegysetfvdalgiladklkarGakvvGewptdgyefeaskavaegdkFvGLalDednqedlteeRiekWveqikk 164
                  + y+++tgnte+ a  i++  g    + v+i++++ +++ a d li+g+ptw++G  +    ++W+++l ++l +ldl+gk++++fGlGdq gy++++vda+g l+d ++a+Ga++ G+++tdgy++++sk++++g kFvG+a+Dednq+dl+e R ++W+ q+++
  MMETSP1174-20130828|13880_1  45 LAYSTTTGNTETCAGYITEVTGL---EAVDISDVTDDDIAAADCLICGAPTWHTGADEqrsgTEWDGFLyERLPNLDLSGKKIGIFGLGDQAGYGDNYVDAMGELYDLFTAKGATICGFTSTDGYDHTESKSIRDG-KFVGMAFDEDNQYDLSEGRAKAWCAQLES 206
                  579******************95...56777777888******************776678889***96378*************************************************************999.**************************986 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.2   1.8e-14   1.9e-11       3     115 ..      45     159 ..      43     176 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.8e-14
    TIGR01753   3 ivYaSmtGnteeiAeiieeglkeagaevdllevadvdkedlleyDavllGcstwgdedlee...ddflp.fveeleeidlegkkvalfGsgdtay...efceavdkleerlkeaGakiia 115
                  + Y+++tGnte+ A  i e         + ++++dv ++d++ +D ++ G++tw  +  e+    +    ++e l + dl+gkk+++fG gd+a+   ++ +a+ +l + + + Ga+i++
  MMETSP1174-20130828|13880_1  45 LAYSTTTGNTETCAGYITEVT--GL---EAVDISDVTDDDIAAADCLICGAPTWHTGADEQrsgTEWDGfLYERLPNLDLSGKKIGIFGLGDQAGygdNYVDAMGELYDLFTAKGATICG 159
                  78***************9853..33...345555666677**************98877751113555435899******************9983455666666667777888888865 PP

>> TIGR01754  flav_RNR: putative ribonucleotide reductase-associated flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.3e-07   0.00033       2     113 ..      42     153 ..      41     172 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.3e-07
    TIGR01754   2 rillayaslsGntkevariireileeeGhevdvetrvstlaeaaldpedydlvllGtftveaG....rtpdevkdfiaelae....kpknvaifGtGetqfG.ddlycgavdrlakffgss 113
                    +lay + +Gnt+  a  i e+   e +      ++s + +  +     d ++ G+ t+++G    r+ +e   f++e +       k++ ifG G+   G  d y +a+  l + f+++
  MMETSP1174-20130828|13880_1  42 AAVLAYSTTTGNTETCAGYITEVTGLEAV------DISDVTDDDIA--AADCLICGAPTWHTGadeqRSGTEWDGFLYERLPnldlSGKKIGIFGLGDQA-GyGDNYVDAMGELYDLFTAK 153
                  568*****************998755544......35555677776..567889999998887333356789999*9995544555899********954.33677899999999999876 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   3.9e-06     0.004      34      80 ..      43      90 ..      35      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.9e-06
    TIGR02008 34 idlpyscraGacstcaGkvkeGt.vdqsdqsfldddqleegyvltcva 80
                   l ys  +G   tcaG ++e t ++  d s + dd+++++ +l c a
  MMETSP1174-20130828|13880_1 43 AVLAYSTTTGNTETCAGYITEVTgLEAVDISDVTDDDIAAADCLICGA 90
                 5589**************9986549999******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 843.93
//
Query:       MMETSP1174-20130828|13882_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 673.48
//
Query:       MMETSP1174-20130828|13883_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   20.3  13.5    2.4e-05   20.1   9.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.12    9.1   5.5       0.14    8.9   3.8    1.0  1  TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family
       0.56    6.4  13.6       0.69    6.1   9.4    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
       0.57    5.5  17.8       0.66    5.3  12.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.76    6.4  12.1       0.85    6.3   8.4    1.1  1  TIGR00634 recN: DNA repair protein RecN
        1.9    4.9  13.1        2.1    4.7   9.0    1.0  1  TIGR02231 TIGR02231: conserved hypothetical protein
        2.4    6.1  13.6        1.1    7.3   0.7    2.2  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        6.6    4.9  15.5         25    3.0  10.7    2.0  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   9.3   4.6e-08   2.4e-05     428     545 ..       3     120 ..       1     129 [. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.6e-08
    TIGR02168 428 kkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaal 545
                  +++ ++e+++++l+++l+e++++  e++++ ++l ++++e+e +   ++q+l+k++e+ ++l++ l +le+lq++++gl ++   +l+ ++kl+   + l+++ + +++y++ +++a 
  MMETSP1174-20130828|13883_1   3 REQAKLENQVSTLRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVVTQDLTKMNEDSERLAEVLLLLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANAKSEYSTYVKKAS 120
                  4566788999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888999999999999998887765 PP

>> TIGR02290  M3_fam_3: oligoendopeptidase, pepF/M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.8   0.00027      0.14     168     278 ..      10     120 ..       6     130 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00027
    TIGR02290 168 eltaklrieveekdgeeeelsl.eevlnllr.dpdaevRkkafkallkalekeeevlaailnalkgerleelrlRkyedpleerllenrieeetldallevvkenlplfrryl 278
                  + +++lr +++e+++   ++ + ++++ l r +++ e  k ++++ l ++++ +e la++l  l+  ++e++ lRk +d +   +++ +ie+++l+ ++++  e+   ++++ 
  MMETSP1174-20130828|13883_1  10 NQVSTLRRRLKEEQQA--RVEAqQKAAQLSReQKEIESSKPVVTQDLTKMNEDSERLAEVLLLLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANAKSEYSTYVKKAS 120
                  6789999999966654..444404444455414566888999**********************************99999999999*************9999888877765 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   9.4    0.0013      0.69     377     478 ..      18     119 ..       2     126 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0013
    TIGR03185 377 qlevliekvkrekqdaksqLlkeleeleeelaeldkkiet.vpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeel 478
                  +l++  ++++ e q++ +qL++e++e+e     + + + + ++d+e++ae+l  le  ++e   +++e++ + + +++lk + ++l+k +++k + +  ++++
  MMETSP1174-20130828|13883_1  18 RLKE-EQQARVEAQQKAAQLSREQKEIESSKPVVTQDLTKmNEDSERLAEVLLLLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANAKSEYSTYVKKA 119
                  4444.455555666699********************987256889*******99999999999999999999999999999999999997777766666555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  12.3    0.0013      0.66     808     919 ..       5     111 ..       1     126 [. 0.56

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0013
    TIGR02169 808 vsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkr 919
                   +++e++++ + ++l+++++ +  ++++ ++l +e++e+e+ k  +     ++ +k++e +e+l+e    ++ L++e  +L+ker+ +  + ++l+ +++ l+  ++ k  +
  MMETSP1174-20130828|13883_1   5 QAKLENQVSTLRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVV----TQDLTKMNEDSERLAEVLLLLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANAKS-E 111
                  4455555555555555555444444444444444444444444444....444444555566667777777788888888888888888888888877777765554433.3 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.4    0.0017      0.85     165     267 ..       7     111 ..       1     125 [. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0017
    TIGR00634 165 elyqallkarqelkelqqkeqelaqrldlLkfqleEleevelesg.EdeaLeeeqeklseleklkelaqealaaLsedad..vqesalleslaearaelaseidas 267
                  +l ++  ++r+ lke qq   e +q++  L+ + +E+e+ ++ +  +  +++e+ e+l+e+  l e +q+ +  L++++d  + + ++l++ + a ++ a+   ++
  MMETSP1174-20130828|13883_1   7 KLENQVSTLRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVVTqDLTKMNEDSERLAEVLLLLERLQKENDGLRKERDgaLDDAKKLKIENDALKKIAN-AKSE 111
                  5667888999******************************9998847789999***********************9655214455555555555554444.3333 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.0    0.0041       2.1      68     169 ..       7     108 ..       1     122 [. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0041
    TIGR02231  68 adseriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelra 169
                  + ++++  lr++++e+++++ +++++a  l+  +k +e  +  +t+  ++++++ + l+e+  ll+  ++e   l++e   + + +++l+    +l++  +a
  MMETSP1174-20130828|13883_1   7 KLENQVSTLRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVVTQDLTKMNEDSERLAEVLLLLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANA 108
                  5578999*******************************************999*************999999999999988888888888776666643333 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   4.4     0.026        13      95     144 ..      15      64 ..       2      70 .. 0.46
   2 ?    7.3   0.7    0.0021       1.1      98     145 ..      70     116 ..      61     122 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.026
    TIGR02894  95 tleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetl 144
                   + + ++ ++ + + +++ ++l ++++e+e+ +  +++  + ++ed e l
  MMETSP1174-20130828|13883_1  15 LRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVVTQDLTKMNEDSERL 64 
                  22222333333333344444445555555555555555555555555554 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0021
    TIGR02894  98 eaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetli 145
                    e+l+ke++ l++e+       ++L+ e++ lkk  ++ + +y t +
  MMETSP1174-20130828|13883_1  70 LLERLQKENDGLRKERDGALDDAKKLKIENDALKKIANA-KSEYSTYV 116
                  567889999999999999889999999998888776554.44566655 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  10.7     0.049        25      21     104 ..       8      91 ..       1     109 [. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.049
    TIGR03495  21 lrearaslekaekalkaqqaelekkanqleallaeakrneea.qaqLrqqlaqaeallaqrekrierLlreneelRrWadtpLPd 104
                  l++   +l +  k+ ++++ e+++ka+ql++ ++e++ ++    ++L +  ++ +++la+    +erL +en+ lR+  d++L d
  MMETSP1174-20130828|13883_1   8 LENQVSTLRRRLKEEQQARVEAQQKAAQLSREQKEIESSKPVvTQDLTKMNED-SERLAEVLLLLERLQKENDGLRKERDGALDD 91 
                  444444555555566677778999999****9999998876515666666665.566788899*************999999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       443  (0.107996); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|13885_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1174-20130828|13886_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    8.8   5.9       0.11   10.4   1.7    2.0  2  TIGR04118 Cxxx_AC3_0185: modification target Cys-rich peptide, AC3_0185 family


Domain annotation for each model (and alignments):
>> TIGR04118  Cxxx_AC3_0185: modification target Cys-rich peptide, AC3_0185 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   2.6e-05      0.11      26      41 ..      37      52 ..      27      59 .. 0.88
   2 ?   -3.2   0.0      0.45   1.8e+03       4      11 ..     223     229 ..     222     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.6e-05
    TIGR04118 26 satCilgCadrCtaaC 41
                 +  C  gCa+ C+ +C
  MMETSP1174-20130828|13886_1 37 DSFCDQGCATECRNHC 52
                 567999********** PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.45
    TIGR04118   4 LFSaKkik 11 
                  +FS Kki+
  MMETSP1174-20130828|13886_1 223 IFS-KKIN 229
                  699.8885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1145.20
//
Query:       MMETSP1174-20130828|13884_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 2036.91
//
Query:       MMETSP1174-20130828|13887_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.9   0.0      0.093   10.8   0.0    1.6  1  TIGR02616 tnaC_leader: tryptophanase leader peptide


Domain annotation for each model (and alignments):
>> TIGR02616  tnaC_leader: tryptophanase leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.3e-05     0.093       2      14 ..      12      24 ..      12      27 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
    TIGR02616  2 itlsnlqkWfniD 14
                 +++++++ W+n+D
  MMETSP1174-20130828|13887_1 12 SIHVPMKSWYNLD 24
                 689********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 981.31
//
Query:       MMETSP1174-20130828|13891_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|13896_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.4   0.1     0.0066   13.8   0.0    1.2  1  TIGR00373 TIGR00373: TIGR00373 family protein
  ------ inclusion threshold ------
      0.032   12.2   0.2      0.071   11.1   0.1    1.6  1  TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein


Domain annotation for each model (and alignments):
>> TIGR00373  TIGR00373: TIGR00373 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.2e-06    0.0066      93     140 ..      91     138 ..      78     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.2e-06
    TIGR00373  93 lvkklreklefeknnlffvcpnanvrftfeeamelnftcPecGaklef 140
                   +k lr +  ++ +     cp++    +++e +e+ + cP cG     
  MMETSP1174-20130828|13896_1  91 KLKALRGQAAYDAQVCKRQCPECRSVQSYDEVVEKRMRCPMCGVAYTK 138
                  5667777777777777778************************76543 PP

>> TIGR04169  perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.5e-05     0.071      51      95 ..     123     167 ..      99     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.5e-05
    TIGR04169  51 vahavkcpycidaytktslekGankeemteavhvaaairgGatlv 95 
                  v + ++cp c  aytk+  +k   + +      +aa +r  ++lv
  MMETSP1174-20130828|13896_1 123 VEKRMRCPMCGVAYTKSMGNKTLAHRQQEVRHQAAARVRRWISLV 167
                  67789*************999998887544444555578777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|13895_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1594.02
//
Query:       MMETSP1174-20130828|13897_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 756.52
//
Query:       MMETSP1174-20130828|13898_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   22.2   0.0    1.7e-05   21.7   0.0    1.2  1  TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM
    3.3e-05   20.9   0.1      4e-05   20.6   0.1    1.1  1  TIGR02967 guan_deamin: guanine deaminase
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.017   12.8   0.0    1.2  1  TIGR00317 cobS: cobalamin 5'-phosphate synthase
      0.017   11.9   0.0      0.022   11.5   0.0    1.1  1  TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase
      0.021   11.5   0.0      0.025   11.2   0.0    1.1  1  TIGR01224 hutI: imidazolonepropionase


Domain annotation for each model (and alignments):
>> TIGR02318  phosphono_phnM: phosphonate metabolism protein PhnM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.1e-08   1.7e-05     317     359 ..      30      73 ..      19      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.1e-08
    TIGR02318 317 aegleLeeavklvtknpAkavgls.drGeiakGkrADlvlveee 359
                  +++l L++a++++t+n A+a+ ++ + G++++G  AD+v+ +  
  MMETSP1174-20130828|13898_1  30 SQDLALYDALAMFTRNGARAAMMEsKLGQLEVGFLADFVVTKML 73 
                  5679********************99*************98764 PP

>> TIGR02967  guan_deamin: guanine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   4.8e-08     4e-05     307     364 ..      15      74 ..      11      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.8e-08
    TIGR02967 307 qtlreaykvsqlq..gkrlsaveafylaTlggakaldlddkiGnlevgkeaDlvvldlaa 364
                  q++++a++    +   + l  ++a+ + T++ga+a  ++ k+G+levg  aD+vv  +  
  MMETSP1174-20130828|13898_1  15 QAIKDAMRNPLHTdgSQDLALYDALAMFTRNGARAAMMESKLGQLEVGFLADFVVTKMLD 74 
                  5566665543222336889***********************************987654 PP

>> TIGR00317  cobS: cobalamin 5'-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     2e-05     0.017      75     145 ..      24      95 ..       9     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2e-05
    TIGR00317  75 glHlDGlaDfg..DalfaagskrrkleimkDsrlGtgGvvalivvlllkilalsslaqrvealllllsevlak 145
                   lH DG  D++  Dal+    +   +++m  s+lG   v +l+ ++ +k+l ls++ q  + + +l   + a 
  MMETSP1174-20130828|13898_1  24 PLHTDGSQDLAlyDALAMFTRNGA-RAAMMESKLGQLEVGFLADFVVTKMLDLSEILQTKDGTGVLTDGIAAT 95 
                  68*******9888***98855554.8******************************99888777776666665 PP

>> TIGR00221  nagA: N-acetylglucosamine-6-phosphate deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.7e-05     0.022     328     366 ..      32      70 ..      19      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.7e-05
    TIGR00221 328 eislsdvvrisslnparalgiddrlGsvakGkdanLavl 366
                  +++l d++ + + n ara  ++ +lG +++G  a+ +v 
  MMETSP1174-20130828|13898_1  32 DLALYDALAMFTRNGARAAMMESKLGQLEVGFLADFVVT 70 
                  67999******************************9875 PP

>> TIGR01224  hutI: imidazolonepropionase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.1e-05     0.025     313     360 ..      32      79 ..      16      93 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.1e-05
    TIGR01224 313 kltaeealaaatvnaAqalglgeekGtleeGkdadlvvlsaesyeeia 360
                  +l+  +ala  t n A a  ++ + G+le G  ad+vv ++ + +ei 
  MMETSP1174-20130828|13898_1  32 DLALYDALAMFTRNGARAAMMESKLGQLEVGFLADFVVTKMLDLSEIL 79 
                  678889********************************9998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 537.86
//
Query:       MMETSP1174-20130828|13900_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 277.73
//
Query:       MMETSP1174-20130828|13899_1  [L=842]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-11   40.0   0.0    5.8e-11   40.0   0.0    4.1  4  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   1.4e-14   5.8e-11       1      80 [.      37     112 ..      37     139 .. 0.86
   2 ?   -4.9   3.9      0.63   2.6e+03      86     117 ..     462     494 ..     449     517 .. 0.46
   3 ?  -10.7  13.2         1   4.1e+03      83     145 ..     685     740 ..     656     765 .. 0.49
   4 ?   -9.5   9.3         1   4.1e+03      91     157 ..     725     795 ..     710     822 .. 0.56

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.4e-14
    TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKav 80 
                  +k+ +Kt+ ++++ +++     +++lK +i++  g   ++ ++q+Liy Gk+L+D+  ++ yki+++   v mv+++   
  MMETSP1174-20130828|13899_1  37 IKICVKTISNDTYDLNVTRAMLISVLKSRIKDTVG---VDAERQRLIYRGKVLQDQDMLSKYKIQDGH-TVHMVARPLNL 112
                  5899*******************************...889***********************9865.68999998655 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 0.63
    TIGR00601  86 ePaatpesaptptp.satpasvaekksaaPasa 117
                  + + ++++ ++p++ s+ ++s ++++s+ P+  
  MMETSP1174-20130828|13899_1 462 AAEDSSSTNSSPSRrSSSETSGPSSSSSQPSQP 494
                  333333333333333333333333333333322 PP

  == domain 3    score: -10.7 bits;  conditional E-value: 1
    TIGR00601  83 kaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegd 145
                  ++a+P++t+++        + +s ++++s a as+v+ +s ++  + + + +++++ ++ ++ 
  MMETSP1174-20130828|13899_1 685 STAAPNTTSNTG-------PGTSSTTSASGATASSVASSSDVPSGVGSGSATQNSPNTNMNSV 740
                  233333333333.......33444444444555555555544444443333333333322221 PP

  == domain 4    score: -9.5 bits;  conditional E-value: 1
    TIGR00601  91 pesaptptp.satpasvaekksaaPasaveeessa..eeeatatalesedtsaese.gdsdretlvvGser 157
                  + sa++ +p ++++++ +++++++P  + + +  a  + e+t+++ ++ +++ae++ g++++++++v  + 
  MMETSP1174-20130828|13899_1 725 SGSATQNSPnTNMNSVNTTNTENSPVVSGNTSVLAsgHSETTSSVAQNYAGQAEAQqGSASASQIAVSRSE 795
                  55777777766666666777777776655555433003334444444444444433134444455544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.76
# Mc/sec: 1462.30
//
Query:       MMETSP1174-20130828|13903_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1619.22
//
Query:       MMETSP1174-20130828|13906_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|13908_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.93
# Mc/sec: 427.19
//
Query:       MMETSP1174-20130828|13918_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1177.34
//
Query:       MMETSP1174-20130828|13917_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 830.14
//
Query:       MMETSP1174-20130828|13916_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1590.64
//
Query:       MMETSP1174-20130828|13920_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 611.06
//
Query:       MMETSP1174-20130828|13915_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 603.38
//
Query:       MMETSP1174-20130828|13921_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|13919_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.5e-128  426.7   1.8   1.9e-127  424.2   1.2    1.8  1  TIGR00955 3a01204: pigment precursor permease
    2.1e-79  265.3   0.0    8.7e-79  263.3   0.0    1.8  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.5e-31  106.1   0.0      6e-31  105.7   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.1e-29  101.5   0.0    1.8e-29  100.8   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.9e-29  100.2   0.0    4.1e-29   99.7   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.9e-28   97.0   0.0    2.6e-28   96.5   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.2e-27   94.7   0.0    1.9e-27   94.1   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      4e-27   93.2   0.0      6e-27   92.6   0.0    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.1e-27   92.8   0.0      6e-27   92.3   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.7e-25   87.0   0.0    3.8e-25   86.5   0.0    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.6e-24   84.7   0.0      3e-24   83.8   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.5e-24   83.9   0.0      4e-24   83.2   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    9.7e-24   81.9   0.0    1.8e-23   81.1   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.6e-23   81.2   0.0    4.5e-23   79.7   0.0    1.6  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.5e-23   79.5   0.0    7.6e-23   78.8   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.5e-22   78.1   0.0    2.1e-22   77.6   0.0    1.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.7e-22   77.9   0.0    2.7e-22   77.3   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.2e-22   76.6   0.0    5.1e-22   75.9   0.0    1.3  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.9e-22   76.6   0.0    5.3e-22   76.1   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.2e-22   76.2   0.0    8.3e-22   75.5   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.1e-21   75.2   0.0    1.6e-21   74.5   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.2e-21   74.5   0.0    1.9e-21   73.9   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.9e-21   74.5   0.0    2.9e-21   74.0   0.0    1.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      2e-21   74.2   0.0      3e-21   73.7   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.4e-21   74.2   0.0    3.5e-21   73.6   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.3e-21   73.6   0.0    5.2e-21   73.0   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    9.4e-21   71.8   0.0      2e-20   70.8   0.0    1.5  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.6e-20   70.3   0.0    5.6e-20   69.7   0.0    1.2  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    6.4e-20   69.3   0.0      1e-19   68.6   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    8.9e-20   69.1   0.0    1.8e-19   68.2   0.0    1.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.2e-19   67.7   0.1    6.9e-19   66.1   0.0    1.7  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.3e-19   67.3   0.0    3.3e-19   66.8   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.8e-19   66.6   0.4      3e-18   63.7   0.0    2.0  2  TIGR01288 nodI: nodulation ABC transporter NodI
    5.5e-19   66.6   0.0    7.3e-19   66.2   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.8e-18   62.4   0.0    1.4e-17   61.7   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.6e-17   61.7   0.0      3e-17   60.8   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.4e-17   60.7   0.0    5.9e-17   60.0   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    9.3e-17   59.3   0.1      5e-16   56.9   0.1    1.9  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.3e-16   58.1   0.0    2.2e-16   57.3   0.0    1.3  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.4e-16   57.9   0.0    2.1e-16   57.3   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.8e-16   57.4   0.1    1.1e-15   54.7   0.0    1.9  2  TIGR00958 3a01208: antigen peptide transporter 2
    3.2e-16   57.3   0.0    7.5e-16   56.1   0.0    1.5  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.8e-16   55.6   0.0    8.5e-16   55.1   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-14   51.7   0.0    1.6e-14   51.2   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-13   48.4   0.0    2.1e-08   31.0   0.0    2.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.2e-13   47.2   0.0    4.6e-13   46.7   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.2e-13   44.9   0.0    5.6e-13   44.5   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    8.8e-13   45.5   0.0    1.4e-12   44.9   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      9e-13   45.8   0.0    2.6e-12   44.3   0.0    1.6  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.9e-11   41.1   0.1    4.6e-06   23.3   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.7e-11   40.4   0.1    1.4e-10   38.1   0.1    1.8  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    9.4e-10   36.2   0.1    1.6e-05   22.3   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.4e-08   29.7   0.0    3.7e-08   29.1   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      1e-06   24.3   0.0    3.8e-06   22.4   0.0    1.7  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.3e-06   23.9   0.2    0.00036   16.6   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    2.8e-06   24.0   0.0    2.4e-05   20.9   0.0    2.1  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    7.9e-06   23.5   3.7    1.5e-05   22.7   2.6    1.3  1  TIGR01247 drrB: daunorubicin resistance ABC transporter membrane protein
     0.0017   15.7   0.1     0.0027   15.1   0.1    1.2  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0034   14.8   6.1     0.0064   13.9   4.2    1.3  1  TIGR00025 Mtu_efflux: ABC transporter efflux protein, DrrB family
     0.0069   13.9   0.0      0.012   13.2   0.0    1.3  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0077   12.5   0.0      0.011   11.9   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0085   13.6   0.2      0.021   12.3   0.2    1.5  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
      0.023   12.3   0.0      0.048   11.3   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
       0.05   11.1   0.2      0.077   10.5   0.1    1.3  1  TIGR03263 guanyl_kin: guanylate kinase


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.2   1.2    3e-129  1.9e-127      32     614 ..      34     596 ..      13     598 .. 0.90

  Alignments for each domain:
  == domain 1    score: 424.2 bits;  conditional E-value: 3e-129
    TIGR00955  32 arkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsek..glkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylg.qeltqkgvqnin...galFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeielleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllaylalririr 614
                   ++  ek +l nv G++k  ++ A+lG+SGaGK+ Lln+la rs++   ++vsg+ l++  +v+   +r++ ayv+qdd ++pt t re+L+fsa+lrl ++ +++  ++ v  +leel+L++c + +ig  + +kg+SgG+rkR ++++el+t P l+f+DEPTsGLDs sa s v++L ++aqkg+t+++tiHQP se+felfd ++ll +G ++y+G+ +  ++ f++ g+p+P  +npadF+++v  +++  + ++          +a ++  +++   ++++++       +++  + +  +++f  q+++ll R      rd + l  r + +i + +l gli+ g  + + ++  n++   g++ ++    +F t  +v+  f+ e+p+flRE+  g+Y + aY+lak   elPl++i+ ++  + vY++ gl+ ++ +    +++  l+ ++++s+g++l+c + ++  + ++ap+v +p llf+Gff+  +++P +++w +yl  ++Y+   +l+ ++sd    +     + ++ +++ e++L+ +++++ + +l l+il+vl++ fr l+ ++l+ +++
  MMETSP1174-20130828|13919_1  34 DNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSATrgKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRLADS-NQQAIEKLVTRMLEELNLTECGEVMIG-GEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKAVCETFTQRGFPVPIHHNPADFIMSVACNHDIPKLKD-------AGFFARGETTEKMAIVRTVSTS-------PET--QFTA-ASTFAQQLYCLLRREAQANYRDKAALIGRYGVTIFLNLLFGLIFEGsGDRDDAKLVNLSshfGSIVMVTIGSMFGTAQPVMLSFPLERPIFLREYTTGTYGVIAYFLAKAAVELPLALIQTIVAYALVYPLLGLQGDFAS---LVACAWLLGIASSSVGVVLGCCVPNVAAVAELAPAVFVPQLLFSGFFVRIKQIPLWLRWCQYLCSLKYTLNLILLIEFSDCGANS----ADSDQADQNCEALLDDTDVSEGQWYLYLTILIVLFFAFRTLGAIVLMQKAK 596
                  4445799************************************976225777888**********************************************6.66677889*******************.7779*****************************************************************************************************************998887777666.......4456666666666655553332.......222..2233.578******************************************977777777777653338899999999***************************************************************98665...5677788999*********************************************************************998866....23334577779*******************************999998876 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.3   0.0   1.4e-80   8.7e-79     761    1301 ..      21     543 ..       7     556 .. 0.86

  Alignments for each domain:
  == domain 1    score: 263.3 bits;  conditional E-value: 1.4e-80
    TIGR00956  761 ewrdltyevk....ikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv.ttGvit.egdrlvngrklds.sFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevigaaagakanqD.yfevwrnsseykavkeeldeleeelskkedkkesekkkkyaasllkqfklvlirlfqqyWRtpdyllskllltivaalfiGftffkagk....slqglqnqllavfmavvlvatliqqllpkfvaqrdlyevRerpsktfswlafilaqivveiPynlvagtlafliiyypvglyanaskadsveergvlfwlllilfflYvstlgllvislseladsAavlasllftlvllFcGvlatksalpkfWifmyrvsPltylvqallssgladvev 1301
                   ew+ ++++v      ++ ++ +L +v+G vk  ++ A++G sGAGk  LlnvLa+R  t G +  +g+ lv+  ++d  +F+R++ Yv q+D  l+t+t reaL fsA lR +++  ++  ++ v ++++ l+l++  + ++G   + G++  qRkr ++gveLv  P  l+FlDePtsGLDs +a s v+ll  +a++G +ilCtiHqP   ++e FD ++ll+ G + +Y G     sk + e F + G  ++p ++nPA++++ v       k++   +f   ++ +++         + +++s +++++++      a ++++q+ + l r+ q ++R+   l+ ++ +ti+ +l+ G +f  +g     +l +l +++ ++ m+++ +   + q +      ++ ++ Re  + t+  +a+ la+  ve+P  l+++ +a+  +y  +gl  + ++        + +wll i+    +s++g++   + ++    a+la ++f   llF+G+ +  +++p +  +   ++ l y+++ +l ++++d   
  MMETSP1174-20130828|13919_1   21 EWKGVNFTVAglvdNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSaTRGKVSvSGEFLVDDCPVDPgAFRRNVAYVMQDDALLPTATPREALTFSATLRLADSN-QQAIEKLVTRMLEELNLTECGEVMIGGEMIkGISGGQRKRTSVGVELVTSP-NLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDG-ECMYQGA----SKAVCETFTQRGF-PVPIHHNPADFIMSVACNHDIPKLKDAgFFARGETTEKM--------AIVRTVSTSPETQFTA-----ASTFAQQLYCLLRREAQANYRDKAALIGRYGVTIFLNLLFGLIFEGSGDrddaKLVNLSSHFGSIVMVTIGSMFGTAQPVMLSFPLERPIFLREYTTGTYGVIAYFLAKAAVELPLALIQTIVAYALVYPLLGLQGDFAS------LVACAWLLGIA----SSSVGVVLGCCVPNVAAVAELAPAVFVPQLLFSGFFVRIKQIPLWLRWCQYLCSLKYTLNLILLIEFSDCGA 543 
                   788888887422114566789***********************************7356876438**********9638********************************9885.4556779******************977766********************.899****************************************************887.*****95....8888899*****7.59************9887777776643133322222221........2334444444444444.....555666777888999*****************************988766666999************99998888888888888999999*******************************************999988......57788888776....5788888888999999999*****************************************999998887655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   9.4e-33     6e-31       9     211 ..      43     256 ..      38     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 9.4e-33
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr....epdevRrsigvvpqkasvdedLtarenlellg..elyglpkkeaeeraeellelvelkeaad.....kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyle.eadkladrvaiidkGkiiaedtpeeL 211
                  + +v+ kv++ +v ++LGP GAGK+ ++++L++    + G++ v+G  +v     +p   Rr+++ v q+ ++  + t re l++ +  +l + +++++e+ ++++le ++l+e  +     + +k  sgG+r+r ++++ l+++P+++fLDEPt+GLD++++ +  +l++++ ++g til t h+ + e+ +l d v +++ G+ + +++ + +
  MMETSP1174-20130828|13919_1  43 LSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpvDPGAFRRNVAYVMQDDALLPTATPREALTFSAtlRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNsEVFELFDSVMLLKDGECMYQGASKAV 256
                  567889**************************95.6799*******866652222688***************************9933467999999***************98763333367899********************************************************9986439***************9999987765 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.8e-31   1.8e-29      14     197 ..      39     228 ..      30     246 .. 0.89

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.8e-31
    TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenval..alevrgkkeeeiqkrveevlelvgledkaka.....lpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathde 197
                  +  +L++v+ k+++  ++ + G+sGaGk++ll++l g+ +++rG+v+v+ge + +    +  ++Rr+++ v qD  ll++ t  e + +  +l+++ +++++i+k v+++le ++l++  ++     + + +sgG ++R+++   +v++P+l+  DePt  lD+e + + ++ll+++ ++G t++ + h+ 
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFsaTLRLADSNQQAIEKLVTRMLEELNLTECGEVmiggeMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQP 228
                  5679*****************************99886.689*************9999**************************998733589999999*****************987751111146789*********************************************************75 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.0   6.4e-31   4.1e-29     330     519 ..      34     230 ..      11     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 6.4e-31
    TIGR02857 330 ayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelae...ldadswrkqiawvpQkPllfe.gtvaenirlarkdaseaevkealeragldelvk.alpqgletei.GergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlal 519
                    +gr+ p+l++v+ +v+  ++ a++G+SGaGKs+ll++l+g   +t+G+++v g+ l +   +d+ ++r+++a+v Q  +l++ +t +e + ++     ++  ++a+e+     l + +l +  e +i Ge  +g+SgGqr+R ++   l+   +l+ lDEPt+ LD+e++   ++ l ++a +g t+l   H++++
  MMETSP1174-20130828|13919_1  34 DNQGREkPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLPtATPREALTFSATLRLADSNQQAIEKLVTRMLEElNLTECGEVMIgGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAqKGSTILCTIHQPNS 230
                  3488999***********************************99.6*******999775433367779**********977765167778888888887777788888876554333223445556666357889***********************************************9667777878898753 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   4.1e-30   2.6e-28     476     693 ..      36     261 ..      15     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 4.1e-30
    TIGR03375 476 peeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldg...vdirqidpadlrrnigyvpqdvtLf.yGtlrdNialgapaaedeellraaelaG..vtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHr..tslLelvdriivldkGrivadGpkdevlealk 693
                  +++ek+ L+nv+ k+k     ai+G  G+GKs+ll++l+g  ++t+G+v++ g   vd   +dp   rrn++yv+qd +L+ ++t r+ ++++a     ++  +a+e+    + e ++    G  +  ge  +++SgGQr+  ++   l+++p++++LDEPts lD++s  ++++ L+++++ + T++ + H+  +++ el d +++l++G  + +G+ ++v e  +
  MMETSP1174-20130828|13919_1  36 QGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGeflVDDCPVDPGAFRRNVAYVMQDDALLpTATPREALTFSATLRLADSNQQAIEKLVtrMLEELNLTECGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQkGSTILCTIHQpnSEVFELFDSVMLLKDGECMYQGASKAVCETFT 261
                  6789999**********9999******************96.6899*****9977789999***************9999856899******9995544445566665430133334556677777778999************************************************998899999999833579************************98765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   2.9e-29   1.9e-27      15     218 ..      37     246 ..      28     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 2.9e-29
    TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek.lsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd..nrildvadrivkmedGk 218
                    +k +l +++ +++   +  + GpsG+Gk  ll++++g rs+  G+++v g+ l +    +  + rr++ y++q   ll + t ++ + +++ l+ +  ++++ ++ ++ +le++ l e         + + +sgGq++r ++   lv+ P+l++ dePt+ ld++s+ + v ll  +a+ +g+til   h   + ++++ d ++ ++dG+
  MMETSP1174-20130828|13919_1  37 GREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRLAdSNQQAIEKLVTRMLEELNLTEcgevmIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQ-KGSTILCTIHQpnSEVFELFDSVMLLKDGE 246
                  46788******************************9988.9***************************************************9998761455556677899*******997766433567899*********************************************996.7999**999962257999999999999986 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   9.4e-29     6e-27      16     222 ..      46     259 ..      34     291 .. 0.80

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 9.4e-29
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeer.riseekvielLgiehLle........RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222
                  v+ +++ + v+a+ G sG+Gk+sl++++aG   +++g++++ ge l d    ++  + +R+v+yv q+  L p  + re L++  +   a+++ ++ e+ v+++L   +L e         + + +sGG ++R ++g  l++sP+L+ +DeP + LD+++    +  L +++++ +  +  +    +ev  l d v++l+dG    +g+ ++v ++
  MMETSP1174-20130828|13919_1  46 VEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCP-VDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRLADSNqQAIEKLVTRMLEELNLTEcgevmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKAVCET 259
                  566777889*********************6.6789************987.9******************************9775444443045555567776543333311111112456789**********************************************998876666666678******************99999988765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   9.4e-29     6e-27       7     203 ..      36     239 ..      32     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 9.4e-29
    TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlel..alklkkkskkekekkkkevlekvglekklk.....kkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdp..evaekadrv 203
                  + ++k il++++ k+++  + ai+G sG+GKs lLn+l+      +gkv ++g+             +r +++y+ q+ aLl + t +e l+   +l l   +++  ek+++++le+++l+++ +     + i  +sgG+++R ++   l+++++li+ DEPt+ LD+++    ++ll++++++g ti++  H+p  ev e +d v
  MMETSP1174-20130828|13919_1  36 QGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKVSVSGEFLVDDC-PVDPGAFRRNVAYVMQDDALLPTATPREALTFsaTLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPnsEVFELFDSV 239
                  567899*********************************9765.67********955433.34445677789******************98722588889999999*************887662233367899**********************************************************7622566666655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   5.9e-27   3.8e-25      13     223 ..      39     260 ..      26     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 5.9e-27
    TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGl....dlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGl.sraea.eerieealarlglaerae.....ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvd.ev.eaedrlvvlhkGkvlaqGaaaelaaea 223
                  ++ +l++v+ +v++ +++a+LGp GaGks L+++l++  +a++g+++v G     d   +p +  +++  v q+ +l    + ++ l++ a+L+   s+++a e+ ++++l++l+l+e  e     e ++ ++GG+r+r  +   l+ +P+l+ lDe+t GLD es  + v+ + +++ ++g ++L + h  + ev e  d++++l+ G+ + qGa++++++++
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEflvdDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRLAdSNQQAiEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIA-QKGSTILCTIHQPNsEVfELFDSVMLLKDGECMYQGASKAVCETF 260
                  56789*******************************96.6789*******72222455678888999**************************966244555145578999*****998652222267899****************************************9999988.7899*******8542663678*******************99876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   4.7e-26     3e-24      12     199 ..      36     229 ..      32     246 .. 0.90

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 4.7e-26
    TIGR00960  12 kgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnval..alriiGvkgreieervsaalekvGlkdkak.....alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathden 199
                  +g +++ l nv+ k+++  +  + G+sGaGks+ll+++ g+  +++Gk+ vsg+ l      + + +rr++  v qd  ll   t  + + +  +lr++  + ++ie+ v+  le++ l++  +     ++ + +sgG+++r ++   +v +P+l++ dePt+ ld+e ++  ++ll ++ ++G t+l + h+ n
  MMETSP1174-20130828|13919_1  36 QGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFsaTLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPN 229
                  5678899*****************************99886.689*************99****************************99884359***********************9876522222566889*******************************************************99854 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   6.3e-26     4e-24      16     218 ..      38     246 ..      29     249 .. 0.86

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 6.3e-26
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll..iskkskkeakerakellekvglekrinkkps.e....lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvv.thdlelakkldrvlelkdgk 218
                   e  +l++v+ ++++  + ai+G sG+Gks ll +l+g  ++t G+v ++G+ l      + +++r +++ ++ q   ll+  t  e +++ +   +++ +++  ++  +++le+++l +  +   + e    +sGG+r+r ++   lv++P+l++ dePt+ ld+++a +  +ll  + ++  t l  +   ++e+ + +d v+ lkdg+
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVDPGAFR-RNVAYVMQDDALLPTATPREALTFSATlrLADSNQQAIEKLVTRMLEELNLTECGEVMIGgEmikgISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIhQPNSEVFELFDSVMLLKDGE 246
                  56679*********************************6.78***********************9.6799****************999876511567778888999**********9977654321222239*********************************************99877766544134788999999999999997 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   2.8e-25   1.8e-23       5     236 ..      30     259 ..      27     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 2.8e-25
    TIGR02315   5 enlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaa.....kradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl.akkyadrivglkageivfdgasseldde 236
                    l  + + +k +l nv+ ++k+  + a++G+sGaGks ll  + +  + ++g++ ++g+ + +    +   +r+++++++q+ +l+   t  e      l+++ tl+ l    +++ ++   ++Le+++l+e  +     +  + +sGGq++R ++   l+ +p+li+ DEP++ LD +s+   ++ll +i++ kg t+++++Hq +  + +  d ++ lk+ge +++gas+++ ++
  MMETSP1174-20130828|13919_1  30 AGLVDNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREA-----LTFSATLR-LADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQ-KGSTILCTIHQPNSeVFELFDSVMLLKDGECMYQGASKAVCET 259
                  5666677888999*****************************9998.56899***********************************99887554.....44555555.3333444444455566666666654431111166889**********************************************97.599*******9764267999*****************998765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0     7e-25   4.5e-23      13     232 ..      39     258 ..      33     264 .. 0.83
   2 ?   -2.5   0.0       8.9   5.7e+02     138     164 ..     289     315 ..     285     321 .. 0.80

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 7e-25
    TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdklk.ksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmq.qaarvsdktaffleGelveegeteqife 232
                  ek  l++v+ ++k+++v a++GpsG+Gks+ll  l   + +  +v ++G+ l+++       +d  ++r++v  v q     p  +  + ++++  lrl +  ++++++++v + L++  l +  +  +  +   ++sGGq++r ++   l ++P+++ lDePts LD++++ +   l++++++k  ti+   h+ +    ++ d ++++ +Ge + +g ++ + e
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSATRGKVSVSGEFLVDD-----CPVDPGAFRRNVAYVMQDDALLPtATPREALTFSatLRLAD-SNQQAIEKLVTRMLEELNLTECGEVMIGgEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKgSTILCTIHQPNsEVFELFDSVMLLKDGECMYQGASKAVCE 258
                  566899*************************998887766665666666655544.....457999*****************445579999993345554.67889**************986666665155679**********************************************9995677777777541577999***********99999888765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 8.9
    TIGR00972 138 lkksalsLsGGqqqrlciaralavePe 164
                  lk++++   G    +++i r+++++Pe
  MMETSP1174-20130828|13919_1 289 LKDAGFFARGETTEKMAIVRTVSTSPE 315
                  666777777888889999999999998 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   1.2e-24   7.6e-23       6     185 ..      41     226 ..      37     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 1.2e-24
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeel.dysrkgllelrkkvalvlqdpddqlfaadvdedvafgp.lnlGls.eaeverrvrealaavdisglee.....rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                   +l++++ +v+r +v a+lG+ GaGks ll+ l+G    + Gkv + Ge l d    +  + r++va+v+qd d  l +a+  e ++f+  l l  s ++ +e+ v   l+ +++++  e       ++ +sgG++kr+++   ++  p++++ldePt+gld++ a   +++l+ + ++G t++ + h
  MMETSP1174-20130828|13919_1  41 PILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLvDDCPVDPGAFRRNVAYVMQD-DALLPTATPREALTFSAtLRLADSnQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIH 226
                  48999******************************8.5789********861555678999**********7.5566678889999**852667665156789999999999999987762222267899*****************************************************99988 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   3.2e-24   2.1e-22      11     239 ..      38     264 ..      31     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 3.2e-24
    TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlle.leveera.raGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve.lakelekkg 239
                   +k+iL++++ +vk+ +v ai+Gp G+Gks L +vlag+++   t+G+++++g+ l++   v+  a r+ +   +q    +p  + +e l  +++ + +  ++++  + +  + + e+l+l e+ e ++  ++ +G sGG +kr+ +   ++ +P+l+ LDe  sGlD ++    ++ +++++++ +++l   h+ +       d v++l dG+ + +G ++ + ++  ++g
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA---TRGKVSVSGEFLVDdCPVDPGAfRRNVAYVMQDDALLPTATPREALTFSATLRLADSNQQA--IEKLVTRMLEELNLTECGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKaVCETFTQRG 264
                  5799**********************************975...89********987526666655578888899****************99999997777775..6677889999999****************************************************************999998888876544444469***********9997651455566666 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   4.3e-24   2.7e-22      15     221 ..      42     259 ..      29     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 4.3e-24
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGr...dvtrvk..vrdreiGfvfqhyalfkhltvrdniafGleir..kkdkakikakveellelvqleklgd.....rypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                  +l +v+ +vk   + a+lGpsG+Gks+ll v+aG    + G++ ++G+   d + v+  + +r++ +v+q+ al++  t r+ ++f  ++r    ++++i + v+++le ++l++ g+        + +sGGqr+r ++   l   p++++ldep + ld++      + l  + ++ +     +   ++e  e+ d +++l++G+    g+++ v + 
  MMETSP1174-20130828|13919_1  42 ILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEflvDDCPVDpgAFRRNVAYVMQDDALLPTATPREALTFSATLRlaDSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKAVCET 259
                  6889999***************************7.5789*******744444444422568************************987774477888999************9877622111567889*********************************9999999999999887766666666789*****************999999988776 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   7.9e-24   5.1e-22     328     542 ..      37     258 ..      26     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 7.9e-24
    TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkq...wdretlGksiGYlPqdveLfeGtvaeniaRfeenad....aekvieaaklagvhelilrlpkGYdteig.egGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps..llelvdkilvlkdGalkafGereevlk 542
                  + +k++l +++ ++k   + ai+Gpsg+GkssL  +l G  + ++G+v + g  l     +d   + +++ Y+ qd  L++ +       f+  +     +++ ie        e  l+l +  +  ig e  +++sgGqr+R ++   l  +P l+ LDeP + LD+e     ++ l ++ +++ t++   h+p+  + el d +++lkdG+    G  + v +
  MMETSP1174-20130828|13919_1  37 GREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRladsNQQAIEKLVTRMLEE--LNLTECGEVMIGgEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNseVFELFDSVMLLKDGECMYQGASKAVCE 258
                  56789**********************************6.6789******9877543449*******************99887777666665440000444555444444444..366777788886255678********************************************************9*9854499**************99999988865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   8.3e-24   5.3e-22       1     191 [.      58     259 ..      58     320 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 8.3e-24
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevp.....aekrsvnvvfqsyaLfPhmtveenvafg..LkmrkvpkaeikervkeaLelvqleefak.....rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD.qeealtmsdriavlrkGkiaqigepeeiyee 191
                  +LGpsG+Gk+ lL +laG      Gk+ ++ge +++       a +r+v  v+q+ aL P  t  e + f+  L++   +++ i++ v+ +Le  +l+e ++       ++ +sGGqr+r ++   +v  P++++lDep s LD +        l ++ +k G t++   h   +e + + d + +l++G+ +  g ++ + e 
  MMETSP1174-20130828|13919_1  58 ILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCpvdpgAFRRNVAYVMQDDALLPTATPREALTFSatLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQK-GSTILCTIHQpNSEVFELFDSVMLLKDGECMYQGASKAVCET 259
                  79****************6.56789999999987654312222579***********************95449999999*******************9872222256789*********************************9988888888888765.88888888863689***************9999999888665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.3e-23   8.3e-22      13     224 ..      39     256 ..      27     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.3e-23
    TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlk...alsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelss.....ladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnl.aasvcdhvvvldgGrvvaaGppaev 224
                  +++i+ +v+ ++   ++ ++lGP G+Gks ll++laG  ++++G+v+++g+ l     +   a  r+va v qd    +  + r+++ +  +  +    ++ ++ +++v r+l + +l++     +    ++ +sGG+r+r+ +   l   P+l++ldePt  ld ++ l+ ++l++++a++g t++ ++h  n    ++ d v++l+ G  +  G  + v
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVddcPVDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRL--ADSNQQAIEKLVTRMLEELNLTEcgevmIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSeVFELFDSVMLLKDGECMYQGASKAV 256
                  5789999******************************6.689********87531114555566689*******999999999999888766433..334444556777888777777761111145577899***********************************************************986256899*********99999988776 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   2.6e-23   1.6e-21       3     212 ..      44     255 ..      42     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 2.6e-23
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailgll.dkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqll..etlkaleklskqakelivealeavgLeeaeevl..kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvke 212
                  ++v+ ++kr  v+a++G sG+Gks     + g     +++++sGe l+d+ ++ + a+r r++a+++q+  +a+ P  t +e l+   tl+ + + ++  ++l++++le+ +L+e  ev+   +    +sGG  +R  + + l++++ l++ DePt+ lD  +++  ++ll+++ +k ++ +  i    + v el d v+++++G+ + +g  k 
  MMETSP1174-20130828|13919_1  44 SNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSaTRGKVSVSGEFLVDDCPVDPGAFR-RNVAYVMQD--DALLPTATPREALTfsATLRLADSNQQAIEKLVTRMLEELNLTECGEVMigGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKA 255
                  678889*****************976665555441457788888888888888888887.689*****9..7999999999876522788888888888899999**************944467789**********************************************99866666666666789***************998876554 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   2.9e-23   1.9e-21     470     677 ..      40     255 ..      19     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 2.9e-23
    TIGR01846 470 pevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdg...vdlaladPawlrrqvgvvlqenvlfsrsi.rdnialakP.aiseekviaaaklaGahdfiselkqGyetev.gekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.kgrtviiiahrlst..vraadrilvlekGkivesGkhee 677
                   ++lsn++ ++k  +v  i GpsG+Gks l  +l       +G+v v g   vd + +dP ++rr+v+ v+q++ l+  +  r+ ++ +    + + +  a+ kl        +l +  e  + ge    +sGGqr+r ++   lv+ P ++ lde ts ld es  +  r l++i+ kg t+++  h+ ++      d +++l++G+ + +G  + 
  MMETSP1174-20130828|13919_1  40 KPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGeflVDDCPVDPGAFRRNVAYVMQDDALLPTATpREALTFSATlRLADSNQQAIEKLVTRMLEELNLTECGEVMIgGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAqKGSTILCTIHQPNSevFELFDSVMLLKDGECMYQGASKA 255
                  579**************************9988764.345678888877333355789***************999876653888887654267777788888998766555566666666662588899**********************************************83589*******9764326789***************8776 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   4.5e-23   2.9e-21      15     232 ..      30     250 ..      23     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 4.5e-23
    TIGR02769  15 ggllgkkq.rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigeP.lrhltsldeserkariaellelvelrs..evl..dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                   gl+ +++  k++l+nv+ ++++    a+lG sGaGks l  +l G  + ++G+vs  G+ l    + +  afrr+v  v+qd   a+ p  + re ++     +l + ++ + ++ ++++le+++l +  ev+    + + +sGGq +r ++   l  +P+li lde  s ld    +s ++ll  + q++ +    i    + v ++ + v++l++G+ + +
  MMETSP1174-20130828|13919_1  30 AGLVDNQGrEKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQD--DALLPTATPREALTFSaTLRLADSNQQAIEKLVTRMLEELNLTEcgEVMigGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQ 250
                  567775541579*********************************95.789*******************************9..57888888888775320223444444555567899******9864344423578899************************************************999988888888999**************98765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   4.7e-23     3e-21      23     230 ..      42     259 ..      33     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 4.7e-23
    TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadG.....GrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lrarkqskaliaervadalklvqlsdaaa.....rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd.rdealvladkillmkeGslialGetralyda 230
                  +l ++  +++   + a+lG+sG+Gk++ll ++aG   + G     G +lv d  +     ++rn+a ++q+ al+p  +  e ++f   lr    ++  i++ v+  l  ++l++ ++     ++ + +sGGq++r ++   lv  p++++ldep s ld++   s v  l ++ ++    t+l+  h+ ++e + l d ++l+k+G+ + +G ++a+ ++
  MMETSP1174-20130828|13919_1  42 ILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSATRGkvsvsGEFLVDDCPVD-PGAFRRNVAYVMQDDALLPTATPREALTFSatLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQK--GSTILCTIHQpNSEVFELFDSVMLLKDGECMYQGASKAVCET 259
                  566666677788899*******************8766554444444444444332.2359***********************99644888888899999999999999999887652222267789*****************************************99999987..569***99983578999******************9998765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   5.5e-23   3.5e-21      18     222 ..      41     256 ..      27     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 5.5e-23
    TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.....krdyGivfqsYaLfPnltvaeniayG..LknkklkreevaerveelLelvglsgseekyPg.....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq..eealslaDrivvmnkgkieqvgtPeei 222
                   +l++++ +vk+  + ++LGPsG Gk++LL ++aG  ++++G++ ++g+ + +  p      +r+   v+q  aL P  t +e +++   L+    +++ +++ v+++Le ++l++ +e   g      +sGGq++r +++  l++sP+l++LDeP s LD+    +  + l ++ +k +  ti+ t  q   e + l D ++ +++g+ +  g+ + +
  MMETSP1174-20130828|13919_1  41 PILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVdpgafRRNVAYVMQDDALLPTATPREALTFSatLRLADSNQQAIEKLVTRMLEELNLTECGEVMIGgemikGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGS--TILCTIHQpnSEVFELFDSVMLLKDGECMYQGASKAV 256
                  57899999999999999******************6.6799******99876654432333489********************99972255567778889999***********998765432222279********************************999999999999988753..5555544422699999*****9999999888877655 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   8.1e-23   5.2e-21      13     222 ..      40     259 ..      29     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 8.1e-23
    TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpee..rvkaGiayvpqGreifpkltveenlelglealkkk..ekkipeeiyelFPvlk..em.lkRrgGd....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldee 222
                    +l++v+ +v+++ v a+lG  g+Gk++ll  l g   +++G+++++ge + +  p +    ++ +ayv q   ++p+ t +e l+ +++ + ++  +++i++ +  +   l+  e  +   gG+    +sGGq++  +++  Lvt+P+l+ LDePt G+         + ++++a+++   +  + q  + + el d++++l+ Ge + +g+++++ e+
  MMETSP1174-20130828|13919_1  40 KPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVDDCPVDpgAFRRNVAYVMQDDALLPTATPREALTFSATLRLADsnQQAIEKLVTRMLEELNltECgEVMIGGEmikgISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNSEVFELFDSVMLLKDGECMYQGASKAVCET 259
                  5699****************************999975.678*********99998876336799*********************988765543322666766666666554411331345577633446**********************************************99888888899************************999887665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   3.1e-22     2e-20     333     529 ..      25     227 ..      12     228 .. 0.74

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 3.1e-22
    TIGR02868 333 ptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldg...vsvaslsesevrrvvsvlaqd.aHlFdttvreNlrlarpda........tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                  ++ ++++l  +   ++++l++v+ +++     a++G+sGaGKs Ll++lag  +  +G+v+++g   v+ + ++  + rr v+++ qd a l  +t re l + +            ++ ++++Le+  L       + G     ge+ + +SGG+r+R  +   L++  +++ LDEPt +LD e + + ++ L   a++g t++   h+
  MMETSP1174-20130828|13919_1  25 VNFTVAGLVDNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKVSVSGeflVDDCPVDPGAFRRNVAYVMQDdALLPTATPREALTFSATLRladsnqqaIEKLVTRMLEELNLT------ECGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSsIAQKGSTILCTIHQ 227
                  55666666666666777**********************************876.8899999994434557789999****99988861555566788888776654311200010233333333333333......44444555688899*******************************************9556666666666665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   8.7e-22   5.6e-20      12     188 ..      39     229 ..      29     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 8.7e-22
    TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelae....qrdelaeellylgHldglKaeLsalEnLkfyaallq..seqk....tveealekvgLsgledlp.....vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                  e+ +l++++ +++   + ++ Gp G+GK++LL +laG + ++ G+v+++++ l +         +++++y+   d+l ++ + +E L+f a+l    s+q+     v+  le+++L+++ +++     ++ +s Gq++R +++  l+++  l  LDEPt  lD e+     +ll++ +++g ++l + hq+ 
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVDdcpvDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRLadSNQQaiekLVTRMLEELNLTECGEVMiggemIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPN 229
                  6789999999999999*********************76.45677777665443311104456899***********************9876542244442222466789999***999876222226789********************************************9999999999999975 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   1.6e-21     1e-19      11     227 ..      33     255 ..      27     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.6e-21
    TIGR02314  11 fdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnval..plelentpkekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemd.vvkricdevavidkgeliekgtvse 227
                   d+ +++   l nv+  v + +++ ++g sgagks+l+  +      t g+v v g+ l      +  + rr++  ++q   ll + t  + +++   l l++++++ i++ vt +l  + l++  +          +sggq++r ++   l + p +++ de ts ld  ++ s + ll  i ++ g til   h+ +  v ++ d+v ++++ge + +g+   
  MMETSP1174-20130828|13919_1  33 VDNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLA-GRSATRGKVSVSGEFLVDDCPVDPGAFRRNVAYVMQDDALLPTATPREALTFsaTLRLADSNQQAIEKLVTRMLEELNLTECGEVMiggemIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQK-GSTILCTIHQPNsEVFELFDSVMLLKDGECMYQGASKA 255
                  56667777889**************************97554.56789****************************************9998875226999**********************999875211114679*********************************************876.78999888876526899**************9986433 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.8e-21   1.8e-19      11     208 ..      38     253 ..      30     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2.8e-21
    TIGR03740  11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllr.....ktsGeilldgrewtrkdl.kkiGsliesPalyenltarenlkvrtlllglp..esriee....vlkivdlentek.....kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshi.lsevelladhiGiiseGklkyekki 208
                  +++ +++nv+ kvk+++v ++lGp GaGks+ll +l+G          sGe l+d+ ++    + +++  ++++ al    t re l   ++l+  +  ++ ie+    +l+ ++l++ +         k  s G ++r  + + l+ +P+l+ ldePt Gld        +l+ s+ +kG t++ + h   sev +l d + ++++G+  y++  
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSAtrgkvSVSGEFLVDDCPVDPGAFrRNVAYVMQDDALLPTATPREALTFSATLRLADsnQQAIEKlvtrMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQpNSEVFELFDSVMLLKDGECMYQGAS 253
                  67889*********************************7541121135788888888887666526788899999999999999999888877644311444554111167888888765422222677899********************************************************97479*******************9865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   1.1e-20   6.9e-19      20     210 ..      49     250 ..      36     253 .. 0.79
   2 ?   -2.3   0.0       9.1   5.9e+02      22      54 ..     339     369 ..     331     379 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 1.1e-20
    TIGR01277  20 sveaGervailGesGaGkstllnliaGfl.....epasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqv....Giadyle.....rlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.sdaaaiasqvvvvedGkikvl 210
                  +v++    ailG+sGaGks+lln++aG         +sGe  v+d  +     ++r v+ ++q++ l++  t r+   l +  +l+l+  +++ +e++ +++     +++  e      + + +sGGqr+r ++   lv    +++ldep s ld       + l++ +a+ k  t+l   h++ s++ +  + v++++dG+  ++
  MMETSP1174-20130828|13919_1  49 KVKRETVCAILGPSGAGKSSLLNVLAGRSatrgkVSVSGEFLVDDCPVD-PGAFRRNVAYVMQDDALLPTATPREA--LTFSATLRLADSNQQAIEKLVTRMleelNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQ-KGSTILCTIHQPnSEVFELFDSVMLLKDGECMYQ 250
                  57788889*******************7511111467888888877654.45589***************999996..567899********99999877652222343332211122466789*********************************99999999998876.667777777876378999***********98766 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 9.1
    TIGR01277  22 eaGervailGesGaGkstllnliaGflepasGe 54 
                  +  ++ a++G  G   + +lnl+ G+++  sG+
  MMETSP1174-20130828|13919_1 339 NYRDKAALIGRYGV--TIFLNLLFGLIFEGSGD 369
                  55688899998765..6899*****99988885 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   5.2e-21   3.3e-19     351     560 ..      38     255 ..      15     261 .. 0.77

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 5.2e-21
    TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldG...vdlreldpeelrerlalvpqdsalf.aasvleniryGrpdasdeeveaaakaaeadefis..klpeGydtll.GergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviahrL.atvlk.adrivvldkGriveqGthae 560
                   +++ l++++ +v+   + a+ GPsGaGks ll++l      ++G++++ G   vd + +dp  +r+++a v qd al+ +a  +e + +      ++  ++a ++   + +++  +l e  + ++ Ge    +sGGq++r ++   ++   ++++Lde ts Ld+es     + l ++ + g t l   h+  + v +  d ++ l +G+ + qG+ ++
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGeflVDDCPVDPGAFRRNVAYVMQDDALLpTATPREALTFSATLRLADSNQQAIEKLV-TRMLEelNLTECGEVMIgGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQkGSTILCTIHQPnSEVFElFDSVMLLKDGECMYQGASKA 255
                  5788999***************************9976.47899*******444455669**************9998824566899999876555555555554433.333330134555555552688889************************************998888888776155666667764144544268999999999888887665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   4.7e-20     3e-18      17     224 ..      40     258 ..      25     267 .. 0.83
   2 ?    0.7   0.0       0.7        45      28      78 ..     444     493 ..     435     510 .. 0.78

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 4.7e-20
    TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlge....pvpararlarakigvvpqfdnldreftvrenllvfgryfgl...streieevipsllefarleskadvrv.....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlm.eeaerlcdrlcvleagrkiaegrpdalid 224
                  k ++ ++   + +  +  +lgp gagks++  ++ g  s  +gk++v ge    + p    + r ++  v q d+l +  t re l  f   ++l   + + ie+ +  +le   l    +v +       +sgg ++r ++   l+  p+l+ ldept+gld  +       l s+  +g til t h    e   l d + +l+ g  + +g  +a+ +
  MMETSP1174-20130828|13919_1  40 KPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGEflvdDCPVDPGAFRRNVAYVMQDDALLPTATPREALT-FSATLRLadsNQQAIEKLVTRMLEELNLTECGEVMIggemiKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPnSEVFELFDSVMLLKDGECMYQGASKAVCE 258
                  556667777788888889************998888.5789*****97763322679999999*********************975.55555552216789*************99999987522111579********************************9988777778888899*********85258899************999999999876 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.7
    TIGR01288  28 aagecfgllgpngagkstia.rlvlglispdegkitvlgepvpararlarak 78 
                  a   ++ llg +g   s +a   +lg++s ++g   vlg  vp+ a +a  +
  MMETSP1174-20130828|13919_1 444 AYALVYPLLGLQGDFASLVAcAWLLGIASSSVGV--VLGCCVPNVAAVAELA 493
                  5566788999999999999725799*******95..7999999888887654 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.1e-20   7.3e-19       7     214 ..      31     251 ..      25     270 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.1e-20
    TIGR03522   7 dlsklygkqk.aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk....nslevrkniGylPehnPlyldlyvreylefsaaly..klkgrklkkrveelielvGlkaeqh.....kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilst.hi.mqevealcdrviiinkGkivadk 214
                   l+   g++k +l +v  ++++  +   lGP GaGks+l+ +l+g  +a+ G v v+ge  ++    ++ + r+n+ y+ + + l      re l fsa+l   + ++++++k v +++e+  l++          i  +s G r+r  +   l+  P+++ ldePt+Gld +  +   +++ +ia++ + il t h    ev  l d v++++ G+ + + 
  MMETSP1174-20130828|13919_1  31 GLVDNQGREKpILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpvDPGAFRRNVAYVMQDDALLPTATPREALTFSATLRlaDSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTiHQpNSEVFELFDSVMLLKDGECMYQG 251
                  5555666555368899999*************************96.7899******986555111167899***************************9862145567889999999998777765441111156778999*******************************************98866666552652469999*********99987665 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.1e-19   1.4e-17      11     214 ..      45     253 ..      36     323 .. 0.78

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 2.1e-19
    TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell..kideqerk...ekalealklvdleeye..dryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvGtP 214
                  +v+ +++   +  i+G+sG+Gks+l+ +l      t+Gk+ + Ge +++  +++     r+ +a+v+q+ al+P  t  + ++++  l   + ++q  +    + le l l +  e +   +  + +sGG+++r  +   l + P+l+++de+ s ld     +    l  + +k   ti+   h    e + l d +++lk+Ge +  G+ 
  MMETSP1174-20130828|13919_1  45 NVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDCPVDP-GAFRRNVAYVMQDDALLPTATPREALTFSATLRlaDSNQQAIEklvTRMLEELNLTECGEVMigGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQK-GSTILCTIHQpNSEVFELFDSVMLLKDGECMYQGAS 253
                  5666788888889***********99998754.689*****************99.777899*******************999876651054444433111456677777766443312578899********************************99999988877777666.55666655651679***************8766554 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.7e-19     3e-17       1     193 [.      43     247 ..      43     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.7e-19
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeit.....epgpdr.mv..vfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad.....krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd.ealllsdrvvmltngpa 193
                  l +v+ ++k+    +++g sg gks+lln++ag +  t g v++ g+ +      +pg  r  v  v+q+ +llp  t re ++++    l+d +++  +++v   +e ++l+e  +       ++ +sgg ++r ++   l + p+l++ldep   ld+ +  +   +ll  + ++  t+l   h+ + e + l d v++l +g  
  MMETSP1174-20130828|13919_1  43 LSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVddcpvDPGAFRrNVayVMQDDALLPTATPREALTFSATLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCV-RLLSSIAQKGSTILCTIHQPNsEVFELFDSVMLLKDGEC 247
                  5789999*9999999******************65.68999999998764122224666442443389*********************************************99872222245688********************************98777665.566656667778887777765166669999999998865 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   9.2e-19   5.9e-17      19     229 ..      44     256 ..      40     260 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 9.2e-19
    TIGR03411  19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltk.lkea.eiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkag.....lLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv..vehDmefvrelaekvtvlheGkvlaeGsldev 229
                  ++++ +v+++ + +i+Gp GaGk+ ll+v++G+  +++G+v ++g+ l+   +      r  ++   q  +++ + t +e l+ +++        l+   +++ ++ ++++le ++L+e  + + g      +s Gq+++  +g+ lv +p+l++lDeP++G+ +e   +  +ll+++a++ s ++  +    + v el ++v  l++G+ + +G  + v
  MMETSP1174-20130828|13919_1  44 SNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVDdCPVDpGAFRRNVAYVMQDDALLPTATPREALTFSATL------RLADSNQQAIEKLVTRMLEELNLTECGEVMIGgemikGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILctIHQPNSEVFELFDSVMLLKDGECMYQGASKAV 256
                  6777789999***********************9.899********666514444156799********************9998654......577778888899999999999999887765432222268*********************************************9987655422444567799999*************9987665 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   7.8e-18     5e-16       4     187 ..      51     243 ..      49     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 7.8e-18
    TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagk........ssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdla.eavatcdrvvlln 187
                  ++  + ++lGp GaGk++ll  + g  + ++G+v v+g+         ++  rr++ yv q   +    p    +  l+  a ++ l   +++a  + v+  le+ +lte  +  +G      +sGGqr+r  v   l + p+l++ldep +Gld  s  + v l++++a++g++il t h+   e  +  d v+ll 
  MMETSP1174-20130828|13919_1  51 KRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKVSVSGEflvddcpvDPGAFRRNVAYVMQDDAL---LPTATPREALTFSA-TLRLADSNQQAIEKLVTRMLEELNLTECGEVMIGGemikgISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQPNsEVFELFDSVMLLK 243
                  5667889*************87666655.999999988632222211234446778888877665...46655555554433.3444555666667789999********99999873344448*********************************************************96515667788888774 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   3.4e-18   2.2e-16     466     666 ..      40     251 ..      33     261 .. 0.74

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3.4e-18
    TIGR03797 466 plvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlek...ldvqavRrqlGvVLQngrllsg.sileniaggasltl.deaweaarm..agleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiV...sesleklkvtRiviAHR.LSTirn.adrilvleeGrvveqG 666
                  + +L++v  k++  +  ai G+SG+GKS+ll +L g    + G+v+  G+ l +   +d  a Rr++  V+Q+  ll+  +  e+++ +a+l l d+ ++a+++  + + e+++    g   +  e  +++SGGQr+R  +   lv+ P+++++DE TS LD ++         s+++   t +   H   S + +  d ++ l++G+ + qG
  MMETSP1174-20130828|13919_1  40 KPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLPTaTPREALTFSATLRLaDSNQQAIEKlvTRMLEELNLTECGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCvrlLSSIAQKGSTILCTIHQpNSEVFElFDSVMLLKDGECMYQG 251
                  679*******************************996.5689*******988654559**************99887651567889999997661555556554112344555555555555556677899*******************************987654301135555555666665565235555424666666666666666 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   3.3e-18   2.1e-16     342     553 ..      36     254 ..      15     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3.3e-18
    TIGR02203 342 pgddrealdsislkveaGevvalvGrsGsGkstlvnll.....pRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLF.ddtiaenvaYgel...eevdeaeveealaaaylkdlvdklpeGldtevG.engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgR.ttlviahRL.s.tiekaDrivvlddGkiverGthe 553
                  +g+++++l++++ kv+  +v a+ G+sG+Gks+l+n+l     +R     sGe l+D+ +++       Rr+va+v qd  L    t  e ++++++   ++ +++ +e+ ++   + + ++  + G +  +G e    +sGGqR+R ++   l+    ++ LDe ts LD+es       L  + ++  t l   h   s   e  D ++ l dG+ + +G+ +
  MMETSP1174-20130828|13919_1  36 QGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLagrsaTRGKVSVSGEFLVDDCPVDP---GAFRRNVAYVMQDDALLpTATPREALTFSATlrlADSNQQAIEKLVT--RMLEELNLTECG-EVMIGgEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGsTILCTIHQPnSeVFELFDSVMLLKDGECMYQGASK 254
                  68999*******************************993222234444556777777777654...579*********987762567789999*9984334444444554443..233444555555.55665156667****************9999999***************999999997655055666787423146889999999999999998765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.8e-17   1.1e-15     493     700 ..      39     256 ..       9     262 .. 0.77
   2 ?    0.2   0.2      0.57        37      21     173 ..     436     582 ..     418     590 .. 0.71

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.8e-17
    TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplke...ydhkylhrkvalVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFiselekgyd.tevgek...Gsq...lsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahr..LstvekadkilvlkkgsvvelGthkqL 700
                  +kp+l +   +++  +v a+ GPsG GKS+   +l      t G+v + g+ l++   +d   ++r+va V q+  l  + + re +++  t    +     +++  +++ ++ + ++ + te+ge    G++   +sgGq++r  +   Lv  P ++ LDe tS LD+     + +ll  s  +k+ t+l   h+   ++ e  d +++lk g+ + +G  k +
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLpTATPREALTFSATLRLAD-----SNQQAIEKLVTRMLEELNlTECGEVmigGEMikgISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSesalSCVRLLS-SIAQKGSTILCTIHQpnSEVFELFDSVMLLKDGECMYQGASKAV 256
                  789*****************************999874.789999999999988755579999**********876661667899998877765433.....334445666666666644477777433244322279*******************************55544444444.667788899988887324678999*********88888877665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.57
    TIGR00958  21 tdlleeifslllpfekellelwlegllrlgvlalaalgvllnkvegllkalkplvaalalvlpslaslraLvalealksaerlallswsalvvsylaalleaalwaklssagasekeaeeeqsetad.lllrLLkllkrdlkllllalvllvls 173
                   +l++ i+   +    +ll+l+   ++++++ +l  lg+ +  v+ +l    p vaa a + p+++  ++L +    + ++    l w   ++s   +l    l +  s  ga+     ++q++++   ll    +++ ++ l+l+ l+ l+++
  MMETSP1174-20130828|13919_1 436 LALIQTIVA--YALVYPLLGLQGDFASLVACAWL--LGIASSSVGVVLGCCVPNVAAVAELAPAVFVPQLLFSGFFVRIKQIPLWLRWCQYLCSLKYTLNLILLIE-FSDCGANSAD--SDQADQNCeALLDDTDVSEGQWYLYLTILIVLFFA 582
                  444444444..44457888888888899999999..8899999999999999999999999999999999999998999999999999987777766665555554.4555555433..33333332267777889999999999999888876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-17   7.5e-16      15     209 ..      34     228 ..      25     240 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.2e-17
    TIGR02324  15 qqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaep..llelGvereearakakellarlniperLWsl....aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhde 209
                   ++G + p+l++v+ +v+   + a+ G+sGaGks+ll +l +      g++ v   ge++  v   + +  + R ++++yv q    +P  + +e ++ +  l+   +++++ ++ ++++l+ ln++e   ++         sGG ++R  +   l++   ++ LdePt+ Ld+      v l++++ ++g +++  +h+ 
  MMETSP1174-20130828|13919_1  34 DNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKVSVS--GEFL--VDDCPVDPGAFR-RNVAYVMQDDALLPTATPREALTFSatLRLADSNQQAIEKLVTRMLEELNLTECGEVMiggeMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQP 228
                  57899*********************************9977654.44777765..5544..455555555677.78******************98765114445566666777899********9975554111134789****************5556679********************************9974 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.3e-17   8.5e-16     490     698 ..      38     256 ..      22     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 1.3e-17
    TIGR03796 490 leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpree...iprevlanslalvdqdivlf.egtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegg...anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEka...idenlrrRgctciivaHR.LstiRd.cdeiivlerGkvverGtHeel 698
                   e+p++++++ ++k  +  A+ G+sG+Gks +  ++aG  + ++G++ + g+ + +   +   +++  +a+v qd  l+ ++t r+ lt +++t+  +d  + a +  ++  + +++     e++ gg   + +sGGqr+R  +   Lv+ P ++ lDE ts LD+e   +   + + + ++g t++   H   s + +  d +++l+ G+ + +G  + +
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLpTATPREALT-FSATLRLADSNQQAIEKLVTRMLEELNLTECGEVMIGGemiKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALScvrLLSSIAQKGSTILCTIHQpNSEVFElFDSVMLLKDGECMYQGASKAV 256
                  589***********************************6.55677777777654332226678999******99866652778899998.68899888887777777777777777777677888888333468********************************99875211567899*******9999835777663699999999999999987665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   2.5e-16   1.6e-14     482     695 ..      35     256 ..      15     271 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 2.5e-16
    TIGR01193 482 syGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkd...idkhelrqlinylPqePfif.sGsilenlllgakenvsqeeikkaveiae.ikddieklplGyqtels.eeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk..tiifvahr..lsvakksdkiivldeGkiieqGshkel 695
                  + G  +++l++++ k+k++ + +++G sG+Gks+l  +l +   a+ G+++++g  l d   +d +++r+ ++y+ q+  ++ + +  e l + a  ++ + + +++ +++  + ++++  + G +  +  e    isgGq++r ++   l++  +++ lde ts ld       v  l ++ +k  ti+   h+   +v +  d ++ l++G+ + qG  k +
  MMETSP1174-20130828|13919_1  35 NQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDdcpVDPGAFRRNVAYVMQDDALLpTATPREALTFSATLRLADSNQQAIEKLVTrMLEELNLTECG-EVMIGgEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKgsTILCTIHQpnSEVFELFDSVMLLKDGECMYQGASKAV 256
                  6688899*******************************9986.7899****9987665446689*************98776267778999999988877666555555554133444444444.45554145578********************************9999999999988887766999999973357999****************998765 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.3e-10   2.1e-08     164     262 ..     164     262 ..     135     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.3e-10
    TIGR03269 164 hiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpev.iedlsdkaillekGeiveeGepeevvakfle 262
                   + + +sGG+++r  +  +l+  p l++ dept  ld ++a      l  ++ +++ +++ t h p+  + +l d  +ll++Ge + +G ++ v + f +
  MMETSP1174-20130828|13919_1 164 EMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSC-VRLLSSIAQKGSTILCTIHQPNSeVFELFDSVMLLKDGECMYQGASKAVCETFTQ 262
                  467899********************************998555.5566778899999******99643678************************9976 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   7.2e-15   4.6e-13      42     252 ..      45     256 ..      35     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 7.2e-15
    TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafG..lelsGvakaerrkrveeqlelvglaeWad.....kkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd.ldealklGnriaimegGrivqlgtpeei 252
                  ++  +v++  ++ ++G sG+Gkssll  + g  + +rGkv+v+ ++  vd   +d  + r+    +v+ v+q  allP  t +e ++f   l l+   ++   k v+++le ++l+e  +     + ++ +sGG ++r  +   + t  +++++deP s ld          ll+  ++   ti+   h    e + l + + ++++G  + +g+++ +
  MMETSP1174-20130828|13919_1  45 NVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVS-GEFLVDDCPVDPGAFRR----NVAYVMQDDALLPTATPREALTFSatLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSC-VRLLSSIAQKGSTILCTIHQpNSEVFELFDSVMLLKDGECMYQGASKAV 256
                  5666889999****************999996.679*****96.67889999999998875....8********************99633778888889999**************98822222345679*******************************7543332.3455555666677777777624588888888888888888777776655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   8.8e-15   5.6e-13    1962    2129 ..      50     227 ..      34     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 8.8e-15
    TIGR01257 1962 vrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltni....sdvhqnmgycpqfdaiddlltgrehlylyarlrgvpa..eeiekvanwsikslglslyadrlag.....tysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshs 2129
                   v+   +  +lg  gagk++ +++l+g +  t g  +v+g  ++ +         +n+ y+ q da+    t re l + a lr   +  + iek+    ++ l l+   + + g       sgg++++ s  + l+  p l++ldept+g+d ++       + si ++g +++ t h 
  MMETSP1174-20130828|13919_1   50 VKRETVCAILGPSGAGKSSLLNVLAGRS-ATRGKVSVSGEFLVDDCpvdpGAFRRNVAYVMQDDALLPTATPREALTFSATLRLADSnqQAIEKLVTRMLEELNLTECGEVMIGgemikGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIHQ 227 
                   5556667889999999999999999976.588999999998887652222467899999999999999999999999999888665511579999999999999988777766622222479999999999999999999999999999999999988888888999999888888885 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.2e-14   1.4e-12     352     553 ..      44     253 ..      18     262 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 2.2e-14
    TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidg...vdiatvtreslrksiatvfqdagllnr.sirenirlgredatdeevveaakaaaasdfiekrlk..gydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iahr.lstvre.adlvlfldqgrliekgsf 553
                   +v  ++k     ai+gp+gagk++l+n+l      + g++++ g   vd   v+  ++r+ +a v+qd  ll   + re +++  +    +   +a +   ++ + e +l   g   + ge  + +sgg+r+r ++   ++    ++ lde ts ld e+       + ++ ++ +t++   h+  s v e  d v++l +g  + +g+ 
  MMETSP1174-20130828|13919_1  44 SNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGeflVDDCPVDPGAFRRNVAYVMQDDALLPTaTPREALTFSATLRLADSNQQAIEKLVTRMLEELNLTecGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILcTIHQpNSEVFElFDSVMLLKDGECMYQGAS 253
                  6788899999999****************975.57899******977778899***************9999965167999999988777676677776665555444444311445566899999**************999999999*************9999999999988777652345425677663588888888888877765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.1e-14   2.6e-12      15     236 ..      42     258 ..      34     264 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 4.1e-14
    TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvte.apvlvkGvaraeaekravelldmvGladkad.....alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemg.farefadrvlffdkGkiveeGkpdeifr 236
                  +l ++e +v++    a++GpsG+Gks++l +l    +   G++ v ge l           p d     + r ++  v+q   l+p  t  + +t  a ++    ++ + ek   ++l+ + l++  +     ++   +sGGq++r ++   l  +p+++++de+ts ld e     + +l  +a++   t+l   h+ +    e+ d v++++ G  + +G+ + + +
  MMETSP1174-20130828|13919_1  42 ILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGEFLVDDC-------PVDP---GAFRRNVAYVMQDDALLPTATPREALTFsATLRLADSNQQAIEKLVTRMLEELNLTECGEvmiggEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQK-GSTILCTIHQPNsEVFELFDSVMLLKDGECMYQGASKAVCE 258
                  688889999999999****************9875.6689*******9998655.......3343...457999*******************997255555556666666656667776666665551112267789********************************99887777777777665.56888888886515789*****************9887766 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05   0.00091     333     379 ..      38      83 ..      23      97 .. 0.73
   2 !   23.3   0.0   7.2e-08   4.6e-06     157     205 ..     164     212 ..     129     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.4e-05
    TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGel 379
                   +k ++++++ k+ ++++  ++Gp GaGks l+++++g+    +G++
  MMETSP1174-20130828|13919_1  38 REKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKV 83 
                  45667778888888888888888888888888888888754.34555 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 7.2e-08
    TIGR03719 157 akveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk 205
                    ++ +sGG+++r ++   l+++P+l++ldePt  ld+es     + l+
  MMETSP1174-20130828|13919_1 164 EMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLS 212
                  568899*********************************9776666655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   2.2e-12   1.4e-10     276     481 ..      43     247 ..      33     263 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.2e-12
    TIGR02633 276 vddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaq..airagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdl....piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaii.vvsselaevlGlsdrvlvigeGkl 481
                  + +v   ++r  +  + G  GaG++ l+++l G    +  g+v + g+ +    p +  a r+++a v +d   d ++p+ +  + +t+++  + a     +++a +k +++ +++l++      +     i ++sGG+++++ +   l+++p+++ ldept G+d  +     +l++ +aq+G +i+  +    +ev+ l d v+++++G+ 
  MMETSP1174-20130828|13919_1  43 LSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRS--ATRGKVSVSGEFLVDDCPVDpgAFRRNVAYVMQD---DALLPTATPREALTFSATLRLADS---NQQAIEKLVTRMLEELNLTECGEVMiggeMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILcTIHQPNSEVFELFDSVMLLKDGEC 247
                  568888999**********************9964..34455555555544444433228999*****988...789************999888765...567778889999999999776655423336889**************************************************998725788899**************986 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00044     0.028      27      58 ..      53      83 ..      27     115 .. 0.83
   2 !   22.3   0.0   2.6e-07   1.6e-05     140     223 ..     167     254 ..     123     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00044
    TIGR02323 27 GevlgivGesGsGkstllkalaarlladaGev 58
                   v +i+G sG+Gks+ll+ la+r  a++G+v
  MMETSP1174-20130828|13919_1 53 ETVCAILGPSGAGKSSLLNVLAGRS-ATRGKV 83
                 57899******************75.556666 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.6e-07
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth..lavarllaqrllvmkqGrvvesGltr 223
                  + +sGG ++r  +  +lvt p+l+f+ ept Gl s  a     ll ++ +  g +++   h   + +  l + ++++k G+ + +G ++
  MMETSP1174-20130828|13919_1 167 KGISGGQRKRTSVGVELVTSPNLIFLdEPTSGLDSESALSCvrLLSSIAQ-KGSTILCTIHqpNSEVFELFDSVMLLKDGECMYQGASK 254
                  468******************************87766432225555444.55555555564434444456688888889888888765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   5.8e-10   3.7e-08     650     795 ..      39     203 ..      17     220 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 5.8e-10
    TIGR00957 650 epptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkg................svayvpqq.awiqndslrenilfgkale.ekyykavlea..calladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahv 795
                  e p l +++ ++ + ++ a++g+ g gkssll  l +      gkv++ g                 vayv q+ a +  ++ re + f  +l+  +  ++++e     +l +l++  +g+    ge    +sggq++r s+   + +  ++ +ld+p s +d+  
  MMETSP1174-20130828|13919_1  39 EKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAG-RSATRGKVSVSGeflvddcpvdpgafrrNVAYVMQDdALLPTATPREALTFSATLRlADSNQQAIEKlvTRMLEELNLTECGEVMIGGEMIKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSES 203
                  679999**************************97765.455666666655333222332222333369***985388899999*******999734566778885225699*********998888888889***********999999999999********976 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.9e-08   3.8e-06     439     630 ..      40     252 ..      28     260 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 5.9e-08
    TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydey..........rytsvikac...q..leediallaekdk.tv...lgegg..i.tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvts...klehlkkadkilllhegscyfygt 630
                   p+l n++ k+++  + a+ g +g+gkssll ++ g    + gk+  sg   f  +   + pg+ + n+ + +  d             +++ ++     q  +e+ ++ + e  + t    ++ gg  i  +sggqr r s+   +    +l +ld p s ld  +      + l  +  + + il t      e +   d ++ll++g+c + g+
  MMETSP1174-20130828|13919_1  40 KPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGR-SATRGKVSVSGE--FLVDDCPVDPGAFRRNVAYVMQDDALlptatprealTFSATLRLAdsnQqaIEKLVTRMLEELNlTEcgeVMIGGemIkGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSESALSCV-RLLSSIAQKGSTILCTIhqpNSEVFELFDSVMLLKDGECMYQGA 252
                  69*****************************988886.6789******96..556666788888888888887777651111111111222233221111111333344333332212211122233222358******************************964443322.3334444444678887622246889999***********99986 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.016      0.99     623     651 ..      43      71 ..      31      81 .. 0.69
   2 !   16.6   0.0   5.7e-06   0.00036     818     889 ..     157     226 ..     125     246 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.016
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                  l +++ +++ +++ +i G+sg+Gks+L+n
  MMETSP1174-20130828|13919_1  43 LSNVEGKVKRETVCAILGPSGAGKSSLLN 71 
                  56666666667777777777777777765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 5.7e-06
    TIGR00630 818 gYikl.GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                  g + + G+  + +sGG  +r  +  eL    t   l  lDePt GL  +     +++l ++++kG t++   h
  MMETSP1174-20130828|13919_1 157 GEVMIgGEMIKGISGGQRKRTSVGVELV---TSPNLIFLDEPTSGLDSESALSCVRLLSSIAQKGSTILCTIH 226
                  4445514566789***********9995...7789999*****************************998766 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.8e-07   2.4e-05     347     547 ..      33     247 ..      16     253 .. 0.75
   2 ?   -0.3   0.0         1        64     212     250 ..     294     332 ..     279     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.8e-07
    TIGR01194 347 kdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrdd...yrdlfsavfadyyl...........fddlvq.pdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishd..dryfeladrlikladGkv 547
                   d ++ e   l  ++ ++++  +  i+G  G Gks+l+ +l G      G++ + Ge + d++  d   +r   + v+ d  l           f   +   d ++qa  +  t+ l+ l+l +  +v+ ++      +s Gqrkr ++    +    ++ lde ++  d     +    ll  + ++G til   h+   + fel d ++ l dG  
  MMETSP1174-20130828|13919_1  33 VDNQGREKPILSNVEGKVKRETVCAILGPSGAGKSSLLNVLAGRSA-TRGKVSVSGEFLVDDCPVDpgaFRRNVAYVMQDDALlptatprealtFSATLRlADSNQQAIEKLVTRMLEELNLTECGEVMIGGEM-IKGISGGQRKRTSVGVELVTSPNLIFLDEPTSGLDSES-ALSCVRLLSSIAQKGSTILCTIHQpnSEVFELFDSVMLLKDGEC 247
                  4678888888999999999999*********************754.5677777777777776533333777777777776651222221111244333314666666666788999***********998877.899********9988888888778889**999888664.566779*************9999622679************975 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1
    TIGR01194 212 sfarsaisesavrvadlniieilifilaktvGslllsll 250
                  +far+   e    v+ +  +    f++a t+ + l+ ll
  MMETSP1174-20130828|13919_1 294 FFARGETTEKMAIVRTVSTSPETQFTAASTFAQQLYCLL 332
                  799*****************************9988775 PP

>> TIGR01247  drrB: daunorubicin resistance ABC transporter membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.6   2.3e-07   1.5e-05     102     199 ..     435     531 ..     411     538 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.3e-07
    TIGR01247 102 ivaliqgaillalsfivaelkvsgvipalv.lallvavalsglGlaialrmssmeGfqlivallvlpllllsGalypiatlpawlqvlakinpltyavd 199
                   +aliq+++  al +    l ++g  ++lv  a+l+++a s++G+++   +  +     +   + +p ll+sG +  i+++p wl++  ++  l y+++
  MMETSP1174-20130828|13919_1 435 PLALIQTIVAYALVY--PLLGLQGDFASLVaCAWLLGIASSSVGVVLGCCVPNVAAVAELAPAVFVPQLLFSGFFVRIKQIPLWLRWCQYLCSLKYTLN 531
                  467888876666665..5577888888776379**************************************************************9875 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.3e-05    0.0027     122     148 ..      53      79 ..      34      89 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.3e-05
    TIGR00157 122 krisvfaGqSGVGKSSLiNlldpevkq 148
                  + +  + G+SG GKSSL+N l ++   
  MMETSP1174-20130828|13919_1  53 ETVCAILGPSGAGKSSLLNVLAGRSAT 79 
                  4456789**************987655 PP

>> TIGR00025  Mtu_efflux: ABC transporter efflux protein, DrrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   4.2    0.0001    0.0064      85     183 ..     426     520 ..     417     528 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.0001
    TIGR00025  85 lagrvlaavarvllatlillvigy.vlGfrfrrgaltvlalalvvivlGvalaaavslvatvtlqadvvlelveLviliflllsallvplnliPtwikpv 183
                   +++ ++    +l++t++  +  y +lG +   + l++         lG+a + +  +++    +  +v el++ v +++ll+s+  v  + iP w+++ 
  MMETSP1174-20130828|13919_1 426 FLAKAAVELPLALIQTIVAYALVYpLLGLQGDFASLVAC-----AWLLGIASSSVGVVLGCCVPNVAAVAELAPAVFVPQLLFSGFFVRIKQIPLWLRWC 520
                  344444555555555555555554344555443444444.....44677777777777777777777888999**************************6 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00019     0.012       3      33 ..      55      85 ..      53      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00019
    TIGR02322  3 lilvvGpsGaGKDtlldlararladeprvlf 33
                 + +++GpsGaGK +ll++++ r a++ +v +
  MMETSP1174-20130828|13919_1 55 VCAILGPSGAGKSSLLNVLAGRSATRGKVSV 85
                 5689**************9999988877766 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00018     0.011     476     614 ..      50     199 ..      38     230 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
    TIGR00954 476 vksGnhlLiiGPnGcGKsslfRilgelWPvyg.............glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfk.erglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv 614
                  vk  +   i+GP G GKssl  +l++   ++g             ++     + ++ yv q   +    t R+ + +  +      ++   +k ++++Lee++L++  e  +g ++++     +sgG+++R ++   +   P+ + LDE ts +
  MMETSP1174-20130828|13919_1  50 VKRETVCAILGPSGAGKSSLLNVLAGRSATRGkvsvsgeflvddcPVDPGAFRRNVAYVMQDDALLPTaTPREALTFSATLRLADsNQQAIEKLVTRMLEELNLTECGEVMIGGEMIK----GISGGQRKRTSVGVELVTSPNLIFLDEPTSGL 199
                  666666789*****************99998888888777776665555556777888888765544448888888877655433034556677778888888888888877777776....47888888888888888888888888888865 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   0.00033     0.021      21      43 ..      56      78 ..      44      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00033
    TIGR03598 21 iafaGrSNvGKSsliNaLtnrkk 43
                  a++G S +GKSsl+N+L++r +
  MMETSP1174-20130828|13919_1 56 CAILGPSGAGKSSLLNVLAGRSA 78
                 6899**************99864 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00074     0.048       3      27 ..      53      77 ..      51      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00074
    TIGR00231  3 eikivivGhvdvGKstLlnsllknk 27
                 e  ++i+G +++GKs+Lln l++++
  MMETSP1174-20130828|13919_1 53 ETVCAILGPSGAGKSSLLNVLAGRS 77
                 66899****************9987 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0012     0.077       3      33 ..      55      86 ..      53      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0012
    TIGR03263  3 livisgpsGvGKstlvkklle.ekeelklsvS 33
                 ++ i gpsG+GKs+l++ l   + ++ k+svS
  MMETSP1174-20130828|13919_1 55 VCAILGPSGAGKSSLLNVLAGrSATRGKVSVS 86
                 56789*************99866777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                       101  (0.0246221); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 1.44u 0.21s 00:00:01.65 Elapsed: 00:00:01.06
# Mc/sec: 745.86
//
Query:       MMETSP1174-20130828|13930_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|13927_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   29.5   0.0    7.1e-07   27.2   0.0    2.1  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.21   8.8e+02      52      83 ..     125     157 ..     102     167 .. 0.70
   2 !   27.2   0.0   1.7e-10   7.1e-07      26     105 ..     350     428 ..     340     435 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.21
    TIGR00229  52 e.lipeedreevrerierrlegerepvseerrv 83 
                    l+ ++++e++++  e++l  ++e++ ++r+v
  MMETSP1174-20130828|13927_1 125 SaLMLSNKWEKMEKEREEMLAATQEIQASQRKV 157
                  447777788888877777777667777777776 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.7e-10
    TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspirdagg 105
                   i++vN+a+ ++fG+s +e++G ++++++ +    ++ +r++ +l+  + p s+    ++k G+++w  +++ p++++g+
  MMETSP1174-20130828|13927_1 350 AIQDVNEAWTDLFGFSGDEVRGSTLNIVHGPATDAQTVQRLMDDLQ-HHFPSSMLILNYHKGGQTFWNFLRLYPLSSSGR 428
                  799************************999999999999******9.556777776669********9999999986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.53
# Mc/sec: 1367.21
//
Query:       MMETSP1174-20130828|13932_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|13931_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 971.59
//
Query:       MMETSP1174-20130828|13935_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.9   0.0    3.5e-05   21.6   0.0    1.1  1  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
    0.00068   16.6   0.0     0.0012   15.9   0.0    1.4  1  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-08   3.5e-05       1      42 []       7      49 ..       7      49 .. 0.98

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.7e-08
    TIGR02276  1 PdGtkvYVtNsgSnsVsVIDtaTnkViatipvg.syPfgvavs 42
                 PdG+   VtN   n+V  ID    +V+ + ++g ++P+gva+s
  MMETSP1174-20130828|13935_1  7 PDGSFALVTNYLGNTVGRIDLQSGTVTSQQYTGfRNPCGVAIS 49
                 9****************************************97 PP

>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-07    0.0012      89     136 ..       4      52 .]       1      52 [] 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.6e-07
    TIGR03866  89 vlepdgkllyianeddalvtvvdiekrkvlaeidvGv.ePeGlavsPdg 136
                  +++pdg +  ++n   ++v  +d+++ +v ++  +G  +P G+a+sPdg
  MMETSP1174-20130828|13935_1   4 AISPDGSFALVTNYLGNTVGRIDLQSGTVTSQQYTGFrNPCGVAISPDG 52 
                  6778888888888888888888888888888888886458888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|13934_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 691.00
//
Query:       MMETSP1174-20130828|13937_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1174-20130828|13939_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 886.80
//
Query:       MMETSP1174-20130828|13938_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 2057.10
//
Query:       MMETSP1174-20130828|13940_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1162.36
//
Query:       MMETSP1174-20130828|13941_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 860.37
//
Query:       MMETSP1174-20130828|13945_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 975.25
//
Query:       MMETSP1174-20130828|13944_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1592.12
//
Query:       MMETSP1174-20130828|13948_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 853.10
//
Query:       MMETSP1174-20130828|13950_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|13947_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.46
# Mc/sec: 1939.67
//
Query:       MMETSP1174-20130828|13953_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-29   99.2  15.7    1.2e-25   87.8   0.8    2.0  2  TIGR00906 2A0303: cationic amino acid transport permease
    4.4e-25   86.3   5.0    4.4e-25   86.3   3.4    1.9  2  TIGR00909 2A0306: amino acid transporter
    1.2e-10   38.7   1.8    1.2e-10   38.7   1.3    1.7  2  TIGR00908 2A0305: ethanolamine permease
    2.6e-09   33.9   0.8    3.7e-09   33.4   0.5    1.2  1  TIGR00911 2A0308: L-type amino acid transporter
      9e-05   19.2   0.8    0.00014   18.5   0.6    1.4  1  TIGR00913 2A0310: amino acid permease (yeast)


Domain annotation for each model (and alignments):
>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.8   1.5e-28   1.2e-25     307     429 ..       8     131 ..       1     139 [. 0.93
   2 !   16.9   5.1   4.3e-07   0.00036     498     592 ..     140     231 ..     134     233 .. 0.77

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 1.5e-28
    TIGR00906 307 mlPyqlldedaplavafe.yvgwevakyivavGalaalstsllgsafalprvvyamaedgllfkflakinsktktPinatvvsgaiaallaflfdlkalvdllsigtllayslvavcvlvlryq 429
                  +     +d++aplavaf+ + g+ +  +++ vG l +lst+ll + +a++rv   +a+dg l+k+la++   ++tP +a +  g++a lla ++d+ al+ llsig +  ys+v+++vl+lr +
  MMETSP1174-20130828|13953_1   8 LTASADIDKNAPLAVAFDgIEGMAWVSFLIDVGGLIGLSTTLLIGLYAQSRVYLGIARDGELPKILARVHPVRGTPAAAQIWCGIVAILLAAFLDVSALASLLSIGVITSYSFVCATVLMLRSN 131
                  5566779**********8578****************************************************************************************************975 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.3e-07
    TIGR00906 498 lilglsilavlgveaiaeleawsiallalvlvlfllvvllilrqpqnkakvafkvPlvPflPalsilvniyllvqldaktwvrfaiWlaiglviy 592
                  l++++++  vlg +   ++  w   l+    vl l++++  lr  +   + ++  P+vP +P l++  n+ ++ ql   +w+r+ + + + l  y
  MMETSP1174-20130828|13953_1 140 LLFTVVLSVVLGATFRCQAPWW---LIGALGVLLLVSLAPFLRSMHFFVPDSYPCPFVPSVPWLGLTSNLVIMAQLPLAAWIRLVVVTVLVLSWY 231
                  5555555556666666664455...444445566666677778888888999**********************************999988776 PP

>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   3.4   5.4e-28   4.4e-25     249     395 ..       4     153 ..       1     185 [. 0.83
   2 ?    0.2   0.8     0.072        59     372     423 ..     177     228 ..     162     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 5.4e-28
    TIGR00909 249 vvlGvvPfrvlagseaelslvkvs.aiqklgalilaagavvsiasvllatlygtsRvlfAlsrdGllpkslskvhektktPyvailifsllaallaslvpleelaeltslglliafvlvavaviilRrkrPdlqra...fkvPlvpvlpal 395
                  v++G+  ++ + +++a+l+++     ++ +++ ++++g+++++ ++ll+ ly++sRv   ++rdG lpk+l++vh+  +tP +a +  +++a+lla++  +++la+l s+g++ ++  v+ +v++lR ++P + +    f v l+ vl+a 
  MMETSP1174-20130828|13953_1   4 VLTGLTASADI-DKNAPLAVAFDGiEGMAWVSFLIDVGGLIGLSTTLLIGLYAQSRVYLGIARDGELPKILARVHPVRGTPAAAQIWCGIVAILLAAFLDVSALASLLSIGVITSYSFVCATVLMLRSNNPSIVKRsllFTVVLSVVLGAT 153
                  56677666665.455666666555589********************************************************************************************************98654233677777777664 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.072
    TIGR00909 372 ilRrkrPdlqrafkvPlvpvlpalalllclylllelgegtivvklvwlllgs 423
                   lR  +  ++ ++ +P vp +p l l+  l ++ +l  + +++ +v  +l +
  MMETSP1174-20130828|13953_1 177 FLRSMHFFVPDSYPCPFVPSVPWLGLTSNLVIMAQLPLAAWIRLVVVTVLVL 228
                  46777777788899*************9999999999999999888777665 PP

>> TIGR00908  2A0305: ethanolamine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   1.3   1.5e-13   1.2e-10     257     378 ..      15     136 ..       1     156 [. 0.86
   2 ?   -0.6   0.0      0.12        99     136     175 ..     198     237 ..     146     250 .. 0.68

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.5e-13
    TIGR00908 257 nsndPlpealevivgassflskflslvGlfGliaslhgiilgysrqifalsregylPeflskvn.rkkaPvraivvpgviGlalvltdetaliivvsvfGaivlyvvsmaalfklrkkePkle 378
                    n Pl+ a++ i g  +++s ++ + Gl+Gl ++l   +++ sr  + ++r+g lP+ l++v+  +++P  a +  g++ + l    + + +  + + G i +y    a+ ++lr ++P + 
  MMETSP1174-20130828|13953_1  15 DKNAPLAVAFDGIEG-MAWVSFLIDVGGLIGLSTTLLIGLYAQSRVYLGIARDGELPKILARVHpVRGTPAAAQIWCGIVAILLAAFLDVSALASLLSIGVITSYSFVCATVLMLRSNNPSIV 136
                  568999999998865.67999999999*************************************999***************9999999999999999**********************974 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
    TIGR00908 136 nilGvkeaaklelvvtlvaiiellvfigavaphfdsanlf 175
                    lG    ++++  + l a i l+v  + v + +++ + f
  MMETSP1174-20130828|13953_1 198 PWLGLTSNLVIMAQLPLAAWIRLVVVTVLVLSWYEWRKRF 237
                  4456666666666666666666666666666666666555 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   4.5e-12   3.7e-09     328     437 ..      42     146 ..       4     161 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 4.5e-12
    TIGR00911 328 lvglsafGsvngslFsssRlifvaarEGhlPsllsmihvkkltplpsllivctltllaalsgDiyslinlisfanslivalavagllylrykkpelerpikvslllpvlf 437
                  l+gls+  +++  l+++sR+    ar+G lP++l+ +h+ + tp  + +   ++++l+a + D+  l  l+s      +  + a++l+lr ++p +   +k sll++v+ 
  MMETSP1174-20130828|13953_1  42 LIGLST--TLLIGLYAQSRVYLGIARDGELPKILARVHPVRGTPAAAQIWCGIVAILLAAFLDVSALASLLSIGVITSYSFVCATVLMLRSNNPSI---VKRSLLFTVVL 146
                  677776..57789********************************************************************************976...34444444433 PP

>> TIGR00913  2A0310: amino acid permease (yeast)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.6   1.8e-07   0.00014     274     359 ..      16     105 ..       5     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-07
    TIGR00913 274 aaSPfviaiq.nagikvlpsiiNavilisvlsvansslyassRlllalakqgkaPkvleyvd.rrGvPlvavivsslfgll..aflavsk 359
                  ++ P  +a +   g++ ++ +i +  li   +     lya sR+ l +a++g++Pk+l++v   rG P +a i + ++++l  afl vs 
  MMETSP1174-20130828|13953_1  16 KNAPLAVAFDgIEGMAWVSFLIDVGGLIGLSTTLLIGLYAQSRVYLGIARDGELPKILARVHpVRGTPAAAQIWCGIVAILlaAFLDVSA 105
                  4788888887346777788889999999999999999***********************98359*******999998876568998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.57
# Mc/sec: 596.23
//
Query:       MMETSP1174-20130828|13952_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1433.36
//
Query:       MMETSP1174-20130828|13954_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 497.26
//
Query:       MMETSP1174-20130828|13957_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-16   55.5   0.2    4.2e-16   55.4   0.1    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0011   14.3   0.2     0.0011   14.3   0.2    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   2.1e-19   4.2e-16     388     501 ..       2     111 .]       1     111 [] 0.93

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 2.1e-19
    TIGR00957 388 riktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmne 501
                  ri+ a+  av+ kal  +      s+vge++ lm  daqr+  +   +  lw a lq+     ll+  lgpsv+ g+a++ +++p+n +    + +y+ + +k  d+r++l+ e
  MMETSP1174-20130828|13957_1   2 RIREALSAAVHSKALCTA----AGSSVGEVLSLMQFDAQRMETFFVSMHTLWDAVLQISGYSILLYHLLGPSVFVGLALLAVVIPINIMTLSTLTSYRRRALKFTDQRVRLVGE 111
                  799999999999999644....4699******************999************9999************************988889999**************9875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   5.3e-07    0.0011     177     260 ..      23     106 ..       2     111 .] 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.3e-07
    TIGR01271 177 stgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserl 260
                  s+g+++sl+  + ++++  +   h +w a lq+     l+++ll  s+f gl++l ++  ++ +    ++ yr +     ++r+
  MMETSP1174-20130828|13957_1  23 SVGEVLSLMQFDAQRMETFFVSMHTLWDAVLQISGYSILLYHLLGPSVFVGLALLAVVIPINIMTLSTLTSYRRRALKFTDQRV 106
                  89*****************************************************99887777777788899876555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 340.72
//
Query:       MMETSP1174-20130828|13958_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.038   10.9   0.0    1.0  1  TIGR01114 mtrH: N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H


Domain annotation for each model (and alignments):
>> TIGR01114  mtrH: N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.4e-06     0.038     226     296 ..       3      75 ..       1      84 [. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.4e-06
    TIGR01114 226 gihnvasawdwlrefkkklkeakk..iyevadvGsnlvaqiagsdyllyGpienakaifpavamvdiliaeaa 296
                  +   +as+w wl +f     ++     ++v   G +   ++  sd+l++G     k +f +v   + l++e+ 
  MMETSP1174-20130828|13958_1   3 SQESIASSWLWLLDFVDSDLNQLFldPFQVDAAGPEESVETSVSDFLVFGTQVAFKVAFGSVLNFADLMGETQ 75 
                  56789**********99887776534688888999999999**********9999999999988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 278.32
//
Query:       MMETSP1174-20130828|13961_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 775.01
//
Query:       MMETSP1174-20130828|13963_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.56
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|13969_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 743.65
//
Query:       MMETSP1174-20130828|13970_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 235.00
//
Query:       MMETSP1174-20130828|13967_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1217.23
//
Query:       MMETSP1174-20130828|13966_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.72
# Mc/sec: 1065.08
//
Query:       MMETSP1174-20130828|13971_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 305.22
//
Query:       MMETSP1174-20130828|13973_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-07   27.2   0.0    1.2e-06   26.5   0.0    1.2  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    0.00024   19.1   0.0    0.00036   18.5   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
     0.0026   14.9   0.0     0.0039   14.4   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase
  ------ inclusion threshold ------
      0.014   11.7   0.0      0.018   11.4   0.0    1.1  1  TIGR01211 ELP3: histone acetyltransferase, ELP3 family
      0.028   10.7   0.0      0.044   10.1   0.0    1.2  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.5e-09   1.2e-06      59     116 ..     113     171 ..     110     179 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.5e-09
    TIGR01575  59 lniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLY.kklgfkeia 116
                  +++  +pe+++ G+Gr+L+  l++ a + g+k+++L V + N++A+++Y +k+g++  +
  MMETSP1174-20130828|13973_1 113 VELQLRPEVRHGGLGRHLMLVLERIAMQFGMKKVMLTVFKCNAVAMSFYvEKMGYQVDD 171
                  678899*******************************************889***9766 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.4e-07   0.00036      86     138 ..     119     172 ..     113     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.4e-07
    TIGR03585  86 pkvk.kgkGsvleealleyafeklklkkLkleVlesNekalkly.ekfgfelegv 138
                  p+v+  g G+ l+  l+++a  ++++kk+ l V++ N  a+ +y ek+g+++ ++
  MMETSP1174-20130828|13973_1 119 PEVRhGGLGRHLMLVLERIAM-QFGMKKVMLTVFKCNAVAMSFYvEKMGYQVDDT 172
                  66776799*****99999886.7*********************889****9874 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.8e-06    0.0039     219     289 ..      98     171 ..      94     174 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.8e-06
    TIGR03448 219 KvHadeepelgEvYvvg..vdpaaqgrGLGkaLtliGlkhleer.glravlLYveadneaAvrtY.ekLgFtvae 289
                   +H++ +p    +Y v   ++p+ +  GLG+ L+l+ l+ ++ + g ++v+L v + n  A++ Y ek+g++v +
  MMETSP1174-20130828|13973_1  98 ETHEEXKPWHPVLYLVElqLRPEVRHGGLGRHLMLV-LERIAMQfGMKKVMLTVFKCNAVAMSFYvEKMGYQVDD 171
                  5677666665667777511679***********998.55555554*******************97799998865 PP

>> TIGR01211  ELP3: histone acetyltransferase, ELP3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05     0.018     467     515 ..     119     171 ..      88     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
    TIGR01211 467 defqhrGyGrklleeaeriakeeglekilvi....sGvGvreyyrklGyekdg 515
                   e +h G Gr+l+   eria + g++k++++      v +  y +k+Gy+ d+
  MMETSP1174-20130828|13973_1 119 PEVRHGGLGRHLMLVLERIAMQFGMKKVMLTvfkcNAVAMSFYVEKMGYQVDD 171
                  5789***********************9875333357888899999***9765 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.3e-05     0.044     161     213 ..     115     168 ..     110     172 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.3e-05
    TIGR03103 161 lavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialy.eklgfr 213
                  l + p+ +++G+G +l+  l    ++ g++ + l+v   n+ a+++y ek+g++
  MMETSP1174-20130828|13973_1 115 LQLRPEVRHGGLGRHLMLVLERIAMQFGMKKVMLTVFKCNAVAMSFYvEKMGYQ 168
                  67889*****************************************98899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.57
# Mc/sec: 505.20
//
Query:       MMETSP1174-20130828|13972_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1027.92
//
Query:       MMETSP1174-20130828|13977_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|13978_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 517.80
//
Query:       MMETSP1174-20130828|13979_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 625.88
//
Query:       MMETSP1174-20130828|13980_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   23.2   0.4    2.1e-05   22.2   0.3    1.4  1  TIGR00517 acyl_carrier: acyl carrier protein
     0.0069   10.9   0.1     0.0059   11.1   0.0    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3     1e-08   2.1e-05       2      68 ..      40     102 ..      39     105 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1e-08
    TIGR00517   2 qeiiekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgd 68 
                  +e++e + k+++e+l+ ++  v +d   + DLg+DS+D  E+v  l   F++ +      +++t+gd
  MMETSP1174-20130828|13980_1  40 SEVLEIIAKFVNEELDWNA-AVGMD---ISDLGVDSIDSTEIVATLNRSFGVSLNPMILLEVDTIGD 102
                  5788999999999999865.46665...78*********************9987766666666666 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   2.9e-06    0.0059    1330    1375 ..      61     103 ..       2     106 .] 0.43

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.9e-06
    TIGR02813 1330 emdmeadlGidsikrveilGtvqdelpdlpelspedlaelrtlGei 1375
                    md+ +dlG+dsi   ei+ t++  +     l+p  l e+ t+G++
  MMETSP1174-20130828|13980_1   61 GMDI-SDLGVDSIDSTEIVATLNRSFG--VSLNPMILLEVDTIGDL 103 
                   1222.2333333333333333333222..12333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.54
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|13982_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 319.23
//
Query:       MMETSP1174-20130828|13981_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 336.99
//
Query:       MMETSP1174-20130828|13985_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 1008.53
//
Query:       MMETSP1174-20130828|13987_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|13984_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-10   34.9   0.1    0.00046   15.9   0.0    3.1  3  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      5e-07   27.2   0.0      1e-06   26.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1   0.00016      0.32       3      42 ..     162     200 ..     161     204 .. 0.87
   2 !   15.9   0.0   2.3e-07   0.00046      81     130 ..     482     528 ..     450     543 .. 0.77
   3 !    8.6   0.0   3.7e-05     0.076     149     182 ..     574     607 ..     564     629 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00016
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPniva 42 
                  gh+ aik +R   +++e +  +  Re+ + a L hP++v+
  MMETSP1174-20130828|13984_1 162 GHRYAIKKVRLS-STNEAKLEKVLREVRILALLDHPHVVR 200
                  6999******98.66677778899***************8 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.3e-07
    TIGR03903  81 tgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga 130
                    ++ lqv  +l   hd  ++hRDLkP n      +   + k+ DFG++ 
  MMETSP1174-20130828|13984_1 482 ALKIFLQVARGLKYVHDCSLIHRDLKPSNCFFMSDG---TVKIGDFGLSR 528
                  457899***********************9987666...46899**9985 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 3.7e-05
    TIGR03903 149 vlGsPaYaaPeqLRgepvtaksDlYaWGLivleC 182
                   +G+  Ya+Peq  g      +D+Y+ G+i++e 
  MMETSP1174-20130828|13984_1 574 GVGTAMYASPEQTAGGDYDESTDVYSMGVILFEM 607
                  58*****************************994 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     5e-10     1e-06      74     145 ..     455     536 ..     450     540 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 5e-10
    TIGR03724  74 ivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedk 145
                  i m+y  +++l+d +e+++          +++ +v++ +  +H+  ++h Dl +sN  + +d+++ + DfGL++  ++ e +
  MMETSP1174-20130828|13984_1 455 IQMQYCANRTLQDFIERRSRddfnisialKIFLQVARGLKYVHDCSLIHRDLKPSNCFFmSDGTVKIGDFGLSRSVDTHELH 536
                  89**************987789999999999*************************988356677777*****998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:01.24
# Mc/sec: 831.32
//
Query:       MMETSP1174-20130828|13986_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1436.94
//
Query:       MMETSP1174-20130828|13990_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|13989_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1293.49
//
Query:       MMETSP1174-20130828|13992_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1488.54
//
Query:       MMETSP1174-20130828|13998_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 151.99
//
Query:       MMETSP1174-20130828|13996_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-23   79.5   0.0    1.1e-22   78.7   0.0    1.3  1  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.7e-26   1.1e-22      79     228 .]       6     204 ..       2     204 .. 0.91

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 2.7e-26
    TIGR00071  79 lnallpedirvkalekVn.kkFdaRfsassrkYryiln..nkk.........................yr.saldlekleaaakellGkhdFsnFtkakdskeksairtikkikvse.....................seeliilkiiGssFllhqvRkivaalvlvgreklpveevsklleqkkrklipkaapanlLll 228
                  l +  p++i + +l + +  +F+aRfsa+ r Y y +    ++                         +   +ld+e++++a   + G hdF++F+ ++ +  +s++rt+ +i+v                       ++ ++ +++ + sFl+ +vR++v++l +vgr+ + +e+++++l++ +r+++p  apan+L+l
  MMETSP1174-20130828|13996_1   6 LAKRNPRQISILDLSPTDgTNFHARFSATGRVYLYRILctGNQaakvgrrqgrveahpmmfdaehwwcVPeGELDVERMRHASALMEGLHDFTSFRGKD-CVAQSPVRTVDQIRVDVlppphlcyfpdesgdgdgpfrEPLCLLITVRARSFLHRMVRNLVGSLYHVGRGSCEPEDIARILKACDRASAPSCAPANGLFL 204
                  77889999*****99987479**********998876632344899********************9633699**********************9966.***************9999*****************98888999******************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1174-20130828|14000_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|14002_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 450.12
//
Query:       MMETSP1174-20130828|13995_1  [L=1422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.17s 00:00:00.98 Elapsed: 00:00:00.70
# Mc/sec: 2681.26
//
Query:       MMETSP1174-20130828|14001_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1076.22
//
Query:       MMETSP1174-20130828|14004_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 289.73
//
Query:       MMETSP1174-20130828|14005_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1174-20130828|14007_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1549.30
//
Query:       MMETSP1174-20130828|14008_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-47  159.6   0.0    2.7e-47  159.1   0.0    1.2  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   6.5e-51   2.7e-47       3     236 ..     107     362 ..     105     365 .. 0.86

  Alignments for each domain:
  == domain 1    score: 159.1 bits;  conditional E-value: 6.5e-51
    TIGR00186   3 evvyGknavleaLenq..........srvkiskllesktkakkllqlvkk.kgvtielvdkkkldkltkngnHqgivaevkpeikeleledlvktakskkapllliLdeitDphNlGailRtAealgvdgvvlkkrrsapltstvvktssGalellplvrvtnlsetltklkesgfwivgtsleaeet.kyekkktkklaLvvGnEgkGvrklikkksDflikipmagk............vdSLNvSVAtgillfei 236
                  + +yG++ vl+aL+ +          ++  +++ ++++    ++  l+ +  g+++ lvdk+ l+ l  n  Hqg+v+  +p     +l+ l    ++  +p  l Lde+ Dp+NlGa +R+A +lg++gv+++ ++sapl + v+k+s+Ga+el+++   +nl ++l++ ++ g  +vgt+l+ ++   +e k   + ++v+GnEg+G+r+++++ +D+ ++i  +              +dSLNvSV+ gill ++
  MMETSP1174-20130828|14008_1 107 DHIYGIQPVLNALLMKqrprfvelmlQQGSFQNPQREEGALGRIASLAGEiSGLQMSLVDKHDLNMLSGNRPHQGVVLLAEP-LPLQTLDTLP-SPDEGTTPCWLALDEVVDPQNLGALIRSACFLGAEGVITSVKNSAPLSPSVSKASAGAMELVNIHATKNLPRLLENARQDGWRVVGTALSDDSIpLEELKPGRPTIVVLGNEGHGLRTNVRRACDVTVRIARGTRsmkqkeaaelgdLDSLNVSVSGGILLHHL 362
                  6799999999888877566663333322223332222223334444443336899***************************.6888888888.5566668**************************************************************************************9888888999***************************9887789999*********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1162.76
//
Query:       MMETSP1174-20130828|14009_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1026.94
//
Query:       MMETSP1174-20130828|14013_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 828.60
//
Query:       MMETSP1174-20130828|14015_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 453.16
//
Query:       MMETSP1174-20130828|14016_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   16.5   0.0     0.0048   14.8   0.0    1.7  2  TIGR00369 unchar_dom_1: uncharacterized domain 1


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-06    0.0048       7      71 ..      28      93 ..      24     104 .. 0.79
   2 ?   -1.9   0.0      0.18   7.4e+02      51      74 ..     244     267 ..     232     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.2e-06
    TIGR00369  7 gieieeledeelevempvkertlqp..igsvHGGvlaaLadtagslaaaltkeegkavvtlelnvny 71
                  +++ e+++++ +v+m++   +l+    g++ GG  aaLad ++++a++ + + g  + t ++++++
  MMETSP1174-20130828|14016_1 28 QVKVLEISQQWRVVRMKLPLNILSRnpGGVMFGGYQAALADPIAAIACSRIFP-GYSCWTRAMSIDF 93
                 6889999999999999888888766669****************888776655.4555666677766 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.18
    TIGR00369  51 aaaltkeegkavvtlelnvnylrp 74 
                  +  l +++g+  vt+e  +++ + 
  MMETSP1174-20130828|14016_1 244 LFDLLDQDGAGFVTVEAAADWWKG 267
                  556778889999999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 882.07
//
Query:       MMETSP1174-20130828|14018_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1117.51
//
Query:       MMETSP1174-20130828|14020_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.52
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|14019_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-29   99.5   0.0    7.5e-15   52.4   0.0    2.8  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    9.8e-29   98.3   0.0    7.9e-17   59.0   0.0    2.3  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    1.4e-20   71.0   0.2    4.1e-16   56.4   0.0    2.4  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    3.5e-18   63.1   0.1    1.1e-11   41.6   0.0    2.3  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    9.6e-17   58.5   0.0    7.5e-10   35.8   0.0    2.2  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.2e-16   58.3   0.5    1.3e-09   35.2   0.0    2.1  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    2.9e-14   50.1   0.0    2.2e-10   37.3   0.0    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    7.4e-11   39.3   0.3    0.00016   18.4   0.1    3.2  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    8.3e-07   25.4   0.1    0.00012   18.3   0.0    2.2  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
  ------ inclusion threshold ------
      0.065   10.4   0.0       0.12    9.6   0.0    1.3  1  TIGR03729 acc_ester: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   7.3e-15     3e-12     115     157 ..     287     330 ..     164     376 .. 0.81
   2 !   52.4   0.0   1.8e-17   7.5e-15     173     386 ..     408     623 ..     400     639 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 7.3e-15
    TIGR01733 115 akskpddlayviyTSGStGkPKgVlvehrslvnllaslar.rye 157
                   +++p+ +a v+yTSGStGkPKgV+++h+++v+ la l++ ++e
  MMETSP1174-20130828|14019_1 287 VDPTPEAMAVVMYTSGSTGKPKGVMITHQNIVASLAGLTStMIE 330
                  2367999**************************99998874444 PP

  == domain 2    score: 52.4 bits;  conditional E-value: 1.8e-17
    TIGR01733 173 DlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeeasee.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrly......vldea..........lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirG 386
                   ++v +i+  l  G +  +  ++ ++    ++a + ++++v     tp + + l ++ +++   ++rl+++gG  +++e+   +r ++  + l+++Y  TEtt++ t+++ s++ +       +G pl+  +++      v d++          + + p    GE +i+G+ v++GY++ pe+ta++F +d         +++TGD++ +++dG+l+++ R  + +K+ G
  MMETSP1174-20130828|14019_1 408 FAAVPKIWDILKKGVEANIGGSAVKS-WLFNVAFAARSHAVVQGRDTPLFNAILFSKLRAMlGGRMRLAVTGGGPCNSEVQSFIRTAFM-MPLVQGYALTETTCAGTIQKSSDPRNGV-----VGPPLSCLDILlrstpeVTDRSskpyldsdtsHYDEPCLGRGEVLIRGQNVSAGYFKLPEKTAAEFDKDG--------WFHTGDVGVWTKDGCLKIVDRLKNLIKLLG 623
                  56666777777777665555555554.66777777777777777778888888887776665569************998888888886.9*************99987766665544.....555555555542222224444422221111224445666778************************5542........9**************************977 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0     1e-12   4.3e-10     112     189 ..     291     372 ..     163     376 .. 0.87
   2 !   59.0   0.0   1.9e-19   7.9e-17     249     437 ..     496     708 ..     464     711 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1e-12
    TIGR01923 112 ldkiatlifTSgstGkpKavvqtfrnhyasavgsaekl....gftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfa 189
                   +++a++++TSgstGkpK+v +t++n++as  g++ ++     ++ ++++L  LP  H+  l + +  l +g++l   d+++
  MMETSP1174-20130828|14019_1 291 PEAMAVVMYTSGSTGKPKGVMITHQNIVASLAGLTSTMieagCIKGQETYLAYLPAAHILELCAELANLSYGTALGFSDPKS 372
                  5899******************************999955444899*************99999999999999998888766 PP

  == domain 2    score: 59.0 bits;  conditional E-value: 1.9e-19
    TIGR01923 249 lpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.....................keghgeilvkganlmkgYlek.gelteaveeqGwlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevq..eavvvpkeDsefGqvPvayikses..eiskakltaylkeklaKy.KvPiafekldelpkeasgKi 437
                  +p+ ++y  TEt+   +  ++  +  +++ vG pl   +i ++                          g ge+l++g+n+  gY++  ++    ++++Gw++tgD+g + ++g l + dR ++li + GGE i  e +E++ +s++  +  +  v+   D e   + va++++++    s ak ++     l+K+ K P+a   +  ++ +a+gK+
  MMETSP1174-20130828|14019_1 496 MPLVQGYALTETTCAGTI-QKSSDP-RNGVVGPPLSCLDILLRSTPevtdrsskpyldsdtshydepCLGRGEVLIRGQNVSAGYFKLpEKTAAEFDKDGWFHTGDVGVWTKDGCLKIVDRLKNLIkLLGGEYIAVEAMEAAFNSSVYANglNGGVLVYGDGEM-DRAVALVQVNAaaLKSWAKANDVDATDLEKLcKDPKATKAVL-DDLNANGKV 708
                  677788888887554333.333333.567788888888888765445666777888888877777667899***************98577888899****************************9779***************99876522456677777776.456666666664445566777777777777656777766554.566666776 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   9.9e-19   4.1e-16      53     191 ..     170     320 ..     127     348 .. 0.83
   2 !   12.4   0.0   2.1e-05    0.0087     356     437 ..     564     634 ..     551     691 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 9.9e-19
    TIGR03098  53 vaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvde...pekasekka.......gaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaG 191
                  v iy +   + ++++++a   + v       L  + v+  +k+cnv+ ++ + + ++++++++++c++l+++i   +   pe+  +++a       +++v+s+++l+ l+++    +vd +++ +a ++YtsGstG+Pkgv+++h+n+va 
  MMETSP1174-20130828|14019_1 170 VLIYEDTCADWMTMMLGALSQSLVVATSYSTLGIDSVVDAIKECNVNTILCNYKDVEKVKKITKDCPSLKNVIYSTNlvaPEDMPSDEAggacpitNLHVMSMKALIELGKEFpsDGVDPTPEAMAVVMYTSGSTGKPKGVMITHQNIVAS 320
                  77899999999*************************************************************976541114544444444444555667788888888888775567888999*************************986 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.1e-05
    TIGR03098 356 eGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveev 437
                   Ge+  rG  v+ GY++ pekta+ f +               + GD++   ++G l +v R  ++ik  G      e  e+
  MMETSP1174-20130828|14019_1 564 RGEVLIRGQNVSAGYFKLPEKTAAEFDKDGW-----------FHTGDVGVWTKDGCLKIVDRLKNLIKLLGGEYIAVEAMEA 634
                  69************************88765...........345666666789*************987755444444444 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   6.7e-05     183     222 ..     283     322 ..     247     363 .. 0.75
   2 !   41.6   0.0   2.8e-14   1.1e-11     317     463 ..     475     636 ..     466     715 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.6e-07
    TIGR03205 183 paewpavkaddvallqytggttglpkgamlthgnltsavs 222
                  p +  + +++ +a++ yt g+tg pkg m+th n+ ++++
  MMETSP1174-20130828|14019_1 283 PSDGVDPTPEAMAVVMYTSGSTGKPKGVMITHQNIVASLA 322
                  55666668999***********************998766 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 2.8e-14
    TIGR03205 317 igsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgiel.........dvvs...ld.dpkkvl.ppgevgelrirgpnvtrgywnraeesaeafv.gdrfltgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqai 463
                  + +gg p   ev  ++     + l  g+ +tet   gt +  + p + g +g  l  +++         d  s   ld d+++   p    ge+ irg nv+ gy++ +e++a  f  ++ f tgd+g+  +dg + +vdr k++i + gg  +  + +e a 
  MMETSP1174-20130828|14019_1 475 AVTGGGPCNSEVQSFIRTAFMMPLVQGYALTETTCAGTIQKSSDP-RNGVVGPPLSCLDIllrstpevtDRSSkpyLDsDTSHYDePCLGRGEVLIRGQNVSAGYFKLPEKTAAEFDkDGWFHTGDVGVWTKDGCLKIVDRLKNLIkLLGGEYIAVEAMEAAF 636
                  567999**********999**************999997666655.3455554444443311111101122223334424444331556789********************99996256899*********************9945677666666666553 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.2e-08     3e-05     146     169 ..     296     319 ..     269     365 .. 0.87
   2 !   35.8   0.0   1.8e-12   7.5e-10     343     422 ..     564     641 ..     550     708 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7.2e-08
    TIGR01734 146 yiiytsGstGkPkGvqishdnLvs 169
                   ++ytsGstGkPkGv i h+n+v+
  MMETSP1174-20130828|14019_1 296 VVMYTSGSTGKPKGVMITHQNIVA 319
                  589******************985 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 1.8e-12
    TIGR01734 343 kGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqiklnG.yrieLedieanlkksky 422
                  +Ge++i G+ vs Gy++ pekt++ f ++     ++tGD+g+ ++dg l +  rl   ikl G   i +e +ea  + s y
  MMETSP1174-20130828|14019_1 564 RGEVLIRGQNVSAGYFKLPEKTAAEFDKD---GWFHTGDVGVWTKDGCLKIVDRLKNLIKLLGgEYIAVEAMEAAFNSSVY 641
                  8*********************9887543...369*************************865256888988888887776 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     5e-08   2.1e-05     191     228 ..     288     325 ..     283     352 .. 0.80
   2 !   35.2   0.0   3.2e-12   1.3e-09     391     511 ..     565     691 ..     549     714 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 5e-08
    TIGR03208 191 rlspddvtqliytsgttgepkgvmhtantllsnilaya 228
                   ++p+ ++ ++ytsg+tg+pkgvm t + +++ +    
  MMETSP1174-20130828|14019_1 288 DPTPEAMAVVMYTSGSTGKPKGVMITHQNIVASLAGLT 325
                  689***********************999999887654 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 3.2e-12
    TIGR03208 391 grllvraasnfggylkrphlnav..daegwfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpava..qvaivaypderlgeracavvvlktga..sldfaalveflkaqkvalq 511
                  g++l+r+    +gy+k p+  a+  d +gwf tgd+   + +g ++i  r k++i + gge i v  +ea +         +  ++ y d  + +ra a+v ++  a  s  +a+ v+  + +k+ ++
  MMETSP1174-20130828|14019_1 565 GEVLIRGQNVSAGYFKLPEKTAAefDKDGWFHTGDVGVWTKDGCLKIVDRLKNLIkLLGGEYIAVEAMEAAFNSSVYANglNGGVLVYGDGEM-DRAVALVQVNAAAlkSWAKANDVDATDLEKLCKD 691
                  789***************987753489**************************98578******99999876554332211456778888776.5777777665543125555556666666666555 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   7.2e-05      0.03     181     238 ..     291     352 ..     270     363 .. 0.83
   2 !   37.3   0.0   5.3e-13   2.2e-10     378     448 ..     564     635 ..     550     642 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.2e-05
    TIGR02275 181 adevaffqlsGGstGtpkliPrthddyaysvr....rsveiceltqqtrylcalPaahnypl 238
                  ++ +a +  + GstG pk +  th++ + s+       +e   ++ q  yl+ lPaah   l
  MMETSP1174-20130828|14019_1 291 PEAMAVVMYTSGSTGKPKGVMITHQNIVASLAgltsTMIEAGCIKGQETYLAYLPAAHILEL 352
                  56788889999******************9853322467888999999**********8766 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 5.3e-13
    TIGR02275 378 aGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienl 448
                   G +l+rG     Gy+k +e  a+ fd++G++ tGd+   tk+G + ++ r k+ i   GGe ia e +e  
  MMETSP1174-20130828|14019_1 564 RGEVLIRGQNVSAGYFKLPEKTAAEFDKDGWFHTGDVGVWTKDGCLKIVDRLKNLIKlLGGEYIAVEAMEAA 635
                  6899****************************************************846********99975 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.8e-07   0.00016      58     188 ..     169     319 ..     118     331 .. 0.61
   2 !   16.5   0.0   1.5e-06    0.0006     273     426 ..     465     636 ..     445     692 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.8e-07
    TIGR02262  58 vllvlldt.vdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlaklpdleklvvvgak......p....agekqlael..........lateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrv 188
                   +l+  dt  d+ +++lGa+   +v  +  + l  d     +++++ + +l   +    +k++  + p+l++++ +++       p     g   +++l          l++e +  +    +++ +a  +y+sGstG+pkGv+ +h n+ +
  MMETSP1174-20130828|14019_1 169 TVLIYEDTcADWMTMMLGALSQSLVVATSYSTLGIDSVVDAIKECNVNTILCNYKDVEKVKKITKDCPSLKNVIYSTNLvapedmPsdeaGGACPITNLhvmsmkalieLGKEFPS-DGVDPTPEAMAVVMYTSGSTGKPKGVMITHQNIVA 319
                  35666676358999999999888888888888888888888899999988888888888888888999988888766542222221222212222222211010000002222222.22334578899*******************99865 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.5e-06
    TIGR02262 273 kaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.....dgge.dvad......gev....Gellvsgpssaagywnnreksratfe.GewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesal 426
                  +a    r+rl+++ G +   ev    ++ f + +++G   te        ++ d + G  G p+    + l+      d++  +  d      +e+    Ge+l+ g   +agy++ +ek++a f   +w ++Gd  v  +dG    + r  +l+k+  G y++   +e+a+
  MMETSP1174-20130828|14019_1 465 RAMLGGRMRLAVTGGGPCNSEVQSFIRTAFMMPLVQGYALTETTCAGTIQKSSDPRNGVVGPPLSCLDILLRStpevtDRSSkPYLDsdtshyDEPclgrGEVLIRGQNVSAGYFKLPEKTAAEFDkDGWFHTGDVGVWTKDGCLKIVDRLKNLIKLlGGEYIAVEAMEAAF 636
                  55556678888888888888888888888888888888888888888888888888888888888888877543311133221111111111123233449************************6268***************************7245677666666654 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-07   0.00012     238     261 ..     291     314 ..     166     331 .. 0.83
   2 !    5.0   0.0    0.0032       1.3     478     521 ..     592     636 ..     573     647 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.9e-07
    TIGR02188 238 sedplfiLYtsGstGkPkGvlhtt 261
                   e +  ++YtsGstGkPkGv+ t 
  MMETSP1174-20130828|14019_1 291 PEAMAVVMYTSGSTGKPKGVMITH 314
                  588999**************9765 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0032
    TIGR02188 478 kglyftGDgarrdkdGyiwilGRvDdvinvsG.hrlgtaeiesal 521
                  +g ++tGD  +  kdG + i+ R+ ++i++ G   ++   +e+a+
  MMETSP1174-20130828|14019_1 592 DGWFHTGDVGVWTKDGCLKIVDRLKNLIKLLGgEYIAVEAMEAAF 636
                  45899***********************98661455555566665 PP

>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00029      0.12     123     201 ..     669     751 ..     657     763 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00029
    TIGR03729 123 keilklkkaywiDr.rikrplsDkeltalvlkqvkkq..lkelskkkvilvtHfvphkefievpadhrifdmlnAflG.sekl 201
                  ++ +++ ka  +D   +++ ++D++ t+ vl  ++++  +++l  ++ i+++H+v      e+p+d+  + + n fl  s+kl
  MMETSP1174-20130828|14019_1 669 AALKSWAKANDVDAtDLEKLCKDPKATKAVLDDLNANgkVAKLGANEKIVAVHLVSGDGSPEKPEDNSPWTPENCFLTaSNKL 751
                  55677888888898799***************9987611666669999****************************9624455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.60
# Mc/sec: 1700.46
//
Query:       MMETSP1174-20130828|14025_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|14026_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   35.7   0.0    3.4e-09   34.8   0.0    1.4  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    0.00012   19.4   0.0    0.00061   17.0   0.0    1.8  2  TIGR03448 mycothiol_MshD: mycothiol synthase
     0.0066   12.8   0.0      0.011   12.1   0.0    1.2  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   2.5e-12   3.4e-09      58     114 ..     188     244 ..     179     248 .. 0.95

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 2.5e-12
    TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfke 114
                  + n+av+   ++qG+++aL +e++ ++++ g  e+ LEV   N  A  LY+klg++e
  MMETSP1174-20130828|14026_1 188 LANLAVDTTLRRQGLAQALCNEVEATVRNWGYDEVLLEVERQNGPACGLYQKLGYAE 244
                  679****************************************************87 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0002      0.28      66      99 ..     180     213 ..     160     219 .. 0.83
   2 !   17.0   0.0   4.4e-07   0.00061     234     287 ..     191     244 ..     190     249 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0002
    TIGR03448  66 eardadsemaElvvhPaaRrrGigkalvrallak 99 
                  +  d  +  a+l+v+ + Rr+G+++al +++ a+
  MMETSP1174-20130828|14026_1 180 DNMDVAPVLANLAVDTTLRRQGLAQALCNEVEAT 213
                  556778889*******************998775 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.4e-07
    TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtv 287
                  ++vd + +++GL +aL       +++ g  +vlL ve  n  A  +Y+kLg++ 
  MMETSP1174-20130828|14026_1 191 LAVDTTLRRQGLAQALCNEVEATVRNWGYDEVLLEVERQNGPACGLYQKLGYAE 244
                  5799999***********9999*****************************975 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.1e-06     0.011     158     214 ..     188     244 ..     176     248 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.1e-06
    TIGR03103 158 lWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrr 214
                  l  lavd + ++ G+ +al  ++    ++ g   + l v   n  a  ly+klg+ +
  MMETSP1174-20130828|14026_1 188 LANLAVDTTLRRQGLAQALCNEVEATVRNWGYDEVLLEVERQNGPACGLYQKLGYAE 244
                  668***************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 914.02
//
Query:       MMETSP1174-20130828|14022_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.0  20.1        1.6    5.5  14.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        6.5    2.7   9.7        9.2    2.2   6.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  14.0    0.0008       1.6     384     508 ..     410     551 ..     394     603 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0008
    TIGR01628 384 qlsigspvigaanisgrhqa.aqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqr......................lqaqgr....rnlnnrnrnvlgnm..nkkqqnaaskanqanvkaqpqaqsknqmqqvvqdn 508
                  q      +     +  +hq  ++qqav+ ++++qq+++q+++ + +q+++++q++++p++p +l+++a++                                 +n  ++ +++ ++   +  q+ +++k+ ++++ ++   ++++q + + +dn
  MMETSP1174-20130828|14022_1 410 QHD----MEQ---MHKHHQMqQRQQAVHLMQQQQQMQQQQQMQQ-QQQQMQQQQQMQPKQPISLVEKAEKLrgllgikgpylsdvagvaaaelG----VstdgMNTAQQVEACFSQLfgAPMQNGTTEKSTSSEHAETDAEENNAQATGAFEDN 551
                  221....222...2233443045677788888888888887766.6666667777778888888877766556666666665444443333321....02222333333333322223222333333333333333333222222444444443 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   6.7    0.0045       9.2     246     369 ..     403     566 ..     389     611 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0045
    TIGR00934 246 akrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssiekns................................................qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknv 369
                  + ++ +r+ d+e++++  +m q ++  +  ++++ + +++ +++++++    ++ q++++ + + s +ek +                                                 qn t  + t+s++ +       ++ + +a+   +++++++ d++++ + ++
  MMETSP1174-20130828|14022_1 403 SAQHRQRQHDMEQMHKHHQMQQRQQAVHLMQQQQ-QMQQQQQMQQQQQ---QMQQQQQMQPKQPISLVEKAEklrgllgikgpylsdvagvaaaelgvstdgmntaqqveacfsqlfgapMQNGTTEKSTSSEHAET----DAEENNAQATGAFEDNTEESGDEKEVWQLKW 566
                  4455667778888888888877555555444444.2222223333333...33447788888888888888888999999999999999999998888866665555555555544444422333333333322211....1111222222222222222222222333233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       870  (0.212092); expected 82.0 (0.02)
Passed bias filter:                      289  (0.0704534); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.21s 00:00:00.98 Elapsed: 00:00:00.81
# Mc/sec: 1000.51
//
Query:       MMETSP1174-20130828|14024_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1125.38
//
Query:       MMETSP1174-20130828|14030_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    6.6   4.2       0.47    6.6   2.9    1.0  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.9   0.00012      0.47     363     558 ..      77     152 ..       4     197 .. 0.43

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00012
    TIGR00926 363 levlpsaeeaslkvlnlaesdvkvevlsdsrkvalvedllskeekesksgieskesskkp.ngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialskeesesvednlsvdksekaklyvlepavnleeedkkksatleaaqlkeGavyllvi 558
                  l  + +a ea++ v++ +    +++ ++++++v++ +  +++ ++++++ +++++++++  + +++                                                                                                y++++                          + + 
  MMETSP1174-20130828|14030_1  77 LAAMKAAAEAMTAVVEEEARLATMNSHTHTHTVTQSQTHSTHLQSTHTQSTHTQSQTHSThTHSRT------------------------------------------------------------------------------------------------YTITQ-------------------------TVTHT 152
                  222222222222222222222222222222222222222222222222222222222221111111................................................................................................11111.........................11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       574  (0.139932); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 767.62
//
Query:       MMETSP1174-20130828|14032_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1174-20130828|14035_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|14036_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 639.32
//
Query:       MMETSP1174-20130828|14039_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 465.44
//
Query:       MMETSP1174-20130828|14040_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.67    5.4   4.3       0.83    5.1   3.0    1.0  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.0    0.0002      0.83    1020    1091 ..      93     167 ..      75     173 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0002
    TIGR02102 1020 eseadkekkedkdeskdkdkvaeaenkesktpags...kkeneeveksskekkeekldkeaklpktaekssklll 1091
                    ++ ++ +    +++++++ +++ ++k+s t  ++   ++++ ++ ++++++++ +l+k++klp+  ++s   ++
  MMETSP1174-20130828|14040_1   93 RTDWSSSTVGGAKKTEPDPSSTKRRQKKSLTKKQQletEEKERKARDAKRKRESRQLEKQKKLPQRHKESAARIS 167 
                   444444555555666666666666666666654441003344455566667778899*******99998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|14042_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 466.36
//
Query:       MMETSP1174-20130828|14046_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|14045_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.0   0.0     0.0046   12.9   0.0    2.2  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.1e-06    0.0046      44     159 ..      27     144 ..       6     266 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.1e-06
    TIGR00870  44 eklnincvdrlgrsallsaaieneneelteLllkke.....egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve............a 159
                  e+ ++n  d +gr+all a+ e++  e + Ll + +       e       ai+    ++  +i++lllk+ ++             s+   g t+l+ A+ +   e v++Ll+ ga+v             a
  MMETSP1174-20130828|14045_1  27 ENYDVNALDHIGRTALLIAVREGKG-EAVTLLHQAQadteiSDE---DGWNAIRMAAREGHTDIMELLLKQGSD-----------VNSRSEDGRTPLMGAAFQGFSEAVEVLLKYGADVDaqdkrkwtpliyA 144
                  2344455555555555533333333.333333333333322111...222333333334444444444444433...........345566788888888888888888888888888874444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1277.77
//
Query:       MMETSP1174-20130828|14049_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 160.27
//
Query:       MMETSP1174-20130828|14048_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   26.0   0.0    2.3e-06   25.0   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.011   13.4   0.0       0.15    9.7   0.0    2.3  3  TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.1e-09   2.3e-06      44     135 ..      48     148 ..      26     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.1e-09
    TIGR03724  44 trkEarllseakkagvntPvvydvdpeekkivmeyie.gkklkdlleekel..........ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGL 135
                  + kE+r l+++ ++g++ P ++ ++++   +vm  i  g++    l+e              +l+++  +     +a++vh Dl   N++++d+++y+iD+G 
  MMETSP1174-20130828|14048_1  48 VEKEFRNLMRCFRSGIPCPEPFLYKEN--LLVMAFIGeGDRAAPQLHEIPRaqlsssawrrTYLQALSITRDLFISARLVHCDLSEFNLLYQDKRCYVIDLGQ 148
                  368********************9999..9*****9624444433333322344588888888888888888899*************************995 PP

>> TIGR02172  Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.04        83      36      60 ..      45      69 ..      12      74 .. 0.76
   2 ?    9.7   0.0   7.2e-05      0.15     153     179 ..     122     148 ..      92     151 .. 0.87
   3 ?   -2.4   0.0      0.35   7.3e+02      92     119 ..     164     191 ..     162     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.04
    TIGR02172 36 keeikkefeasrkvfslGiptPkvi 60
                 +  + kef +  + f  Gip P+++
  MMETSP1174-20130828|14048_1 45 RTWVEKEFRNLMRCFRSGIPCPEPF 69
                 45688999999999******99987 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 7.2e-05
    TIGR02172 153 ktClhgDlqignlivdgkrtywiDlGe 179
                   + +h Dl   nl+ ++kr y iDlG+
  MMETSP1174-20130828|14048_1 122 ARLVHCDLSEFNLLYQDKRCYVIDLGQ 148
                  5779**********************7 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.35
    TIGR02172  92 rleelakifAeeakklHatkcdtsklks 119
                  +l++l   f + + + H++++ t  +++
  MMETSP1174-20130828|14048_1 164 DLSNLLSFFQRRGGQTHSVDAVTALVTD 191
                  6788888899999999999998865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 920.26
//
Query:       MMETSP1174-20130828|14052_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-31  106.5   0.0    3.3e-31  106.3   0.0    1.0  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    6.2e-07   26.7   0.1    1.5e-06   25.4   0.0    1.7  1  TIGR00092 TIGR00092: GTP-binding protein YchF
    5.7e-05   20.0   0.1      7e-05   19.7   0.0    1.0  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    0.00096   16.7   0.0     0.0012   16.4   0.0    1.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0028   14.9   0.0     0.0034   14.6   0.0    1.1  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0058   13.5   0.0      0.007   13.2   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0   4.8e-34   3.3e-31     210     327 ..       3     118 ..       1     120 [. 0.96

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 4.8e-34
    TIGR02729 210 aDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel.ekkvlaisaltkegleellkkllel 327
                   DiPgliega+ g+gLG  FL+H er++vllhl+d +++   dp++dl++i++eL  ys++La kp+ vvl+k dll++e+++e+l+ lk++  +++v+a+s++++e+l+ell+++++l
  MMETSP1174-20130828|14052_1   3 LDIPGLIEGAAAGKGLGRAFLRHTERCQVLLHLVDGESA---DPCADLTAINRELGLYSPDLAAKPQAVVLTKSDLLSAEDVTEKLEILKAAArHNRVMAVSSADGEHLRELLQRTHNL 118
                  6***********************************999...9**********************************************9999899*****************998776 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-09   1.5e-06      72     168 ..       3      91 ..       1     119 [. 0.78

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.2e-09
    TIGR00092  72 vDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeLila..Dlelvekkiekvkkkakegkeakeelellekv 168
                  +Di GL++Ga++G+GLG +fL +    + ++h v +          ++ dP  Dl  in+eL l   Dl+   +++  +k    + ++  e le+l++ 
  MMETSP1174-20130828|14052_1   3 LDIPGLIEGAAAGKGLGRAFLRHTERCQVLLHLVDG----------ESADPCADLTAINRELGLYspDLAAKPQAVVLTKSDLLSAEDVTEKLEILKAA 91 
                  6********************999999999999865..........46799999999999987752266655566666666666677777777777655 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     1e-07     7e-05     260     348 ..      20     116 ..      19     119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1e-07
    TIGR03156 260 kaTLeevaeadlllhvvDasdeeaeeqieaveevL..eelgaeeipvllvlNkidkle....eeeleeleekk..eeavlvsAkkgegleeLleaie 348
                  +a L  +++ ++llh+vD  + +  + ++a+++ L   + +++++p+ +vl k d+l+    +e+le l++ +  ++ ++vs+++ge+l+eLl++ +
  MMETSP1174-20130828|14052_1  20 RAFLRHTERCQVLLHLVDGESADPCADLTAINRELglYSPDLAAKPQAVVLTKSDLLSaedvTEKLEILKAAArhNRVMAVSSADGEHLRELLQRTH 116
                  67899999**********999998888888887651157789999************954442333322222233668899*********9999866 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-06    0.0012      93     183 ..      21     113 ..      13     116 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-06
    TIGR03598  93 eYLekrenLkgvvllvDirhe.....lkelDlellell.keakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelka 183
                  ++L+++e+ + ++ lvD         l+++++el  +  + a+ p  vvltK+D l+ ++++++l+ +k++++++    +v+++Ss ++e ++el +
  MMETSP1174-20130828|14052_1  21 AFLRHTERCQVLLHLVDGESAdpcadLTAINRELGLYSpDLAAKPQAVVLTKSDLLSAEDVTEKLEILKAAARHN----RVMAVSSADGEHLRELLQ 113
                  56777777777777776655411111344444443332134577889******************9999988777....89*********9999876 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     5e-06    0.0034      47     108 ..      62     125 ..      47     131 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5e-06
    TIGR03596  47 knkprlivlnkaDladpektkkwlkyfe..ekgkkalavnakkkkkvkkilkaikkllkekkek 108
                  + kp+ +vl+k+Dl + e +++ l+ ++   ++++++av++ ++++++++l+  ++l+ +  e+
  MMETSP1174-20130828|14052_1  62 AAKPQAVVLTKSDLLSAEDVTEKLEILKaaARHNRVMAVSSADGEHLRELLQRTHNLVGRHAES 125
                  579*************9999999999997677889******************99998877665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     1e-05     0.007     255     355 ..      26     129 ..      19     131 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1e-05
    TIGR03594 255 ieradvvllvlDateg.....iseqDlkiaglile.egkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevy.eslskrist 355
                   er++v l ++D ++      ++  + ++  +  + + k+  +v+ K Dl+    + e+++++le   + +++ +++ +S  +g+++++ll+  ++++ +++++ri t
  MMETSP1174-20130828|14052_1  26 TERCQVLLHLVDGESAdpcadLTAINRELGLYSPDlAAKPQAVVLTKSDLL----SAEDVTEKLEILKAAARHNRVMAVSSADGEHLRELLQRTHNLVgRHAESRIAT 129
                  567777777777664401111333333333333222679999*********....6777888888888899999*****************99987662566777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 600.78
//
Query:       MMETSP1174-20130828|14053_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1018.20
//
Query:       MMETSP1174-20130828|14055_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   22.1   0.2    4.9e-05   21.1   0.1    1.6  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.43   1.7e+03      13      20 ..      16      23 ..      13      24 .. 0.75
   2 !   21.1   0.1   1.2e-08   4.9e-05       3      32 ..      36      65 ..      34      68 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.43
    TIGR00756 13 agrveeAl 20
                 ++r++eA+
  MMETSP1174-20130828|14055_1 16 WRRTNEAV 23
                 78889986 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 1.2e-08
    TIGR00756  3 yntlisglckagrveeAlelfdeMkergiv 32
                 +n++i+ l+k +r+e+ ++l+d+M e++i 
  MMETSP1174-20130828|14055_1 36 CNVIIRELGKKRRLEKIWKLMDLMDEHKIM 65
                 9************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|14051_1  [L=1074]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-29   99.3   0.7    9.5e-28   94.4   0.5    2.1  1  TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming)
    2.7e-06   24.4   0.3     0.0032   14.3   0.1    2.6  2  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase


Domain annotation for each model (and alignments):
>> TIGR03030  CelA: cellulose synthase catalytic subunit (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.5   4.6e-31   9.5e-28      63     378 ..      60     425 ..      45     436 .. 0.83

  Alignments for each domain:
  == domain 1    score: 94.4 bits;  conditional E-value: 4.6e-31
    TIGR03030  63 lsvlvslRYlfWRltetlpvdetlnlllgllLllaElyslvilllglfltvapldrkpvplkl.....dpeelPtVDvfiPtYNEdleivettvlaaknidyPadklrvyilDDGGtkqklndedpeeaeaarrreelkelaekl......................................gvkYitR..eenvHAKAGNlneal....kktdGelililDaDHvptrdFLqetvGffvk........dpklalvqtPHfFvsPdPierNLatfekvPsEnelFYgliqkGlDlWnaaFFCGSaAvlRRealeeigGiatetvtEDaetalklhsrGyesvyldrpliagLapetlsafigqRvRWArGml 378
                  +  +  + Y++W   +   +++    ++g   l+aE+ s++  ++   + +++ ++++ pl++       + lP V   +  Y E++    +t+    ++dyP dkl++ +lDDG   +  n++ +  a  ++ ++ l++l+ ++                                       ++ i R  ++  H K GNln+a+    ++   ++ + lD+D +pt dFLq ++  f k          ++a+ q P  F++   ie N    + + +  ++++ +  + lD W+   + G   ++ + ale+  G +   + ED+ t  +l s G++++y+d+ ++ gL  +t+   + qR RWA G +
  MMETSP1174-20130828|14051_1  60 AHFITGIAYITWIGQD---MKHNFGYFIGPSFLIAEVLSFITRCVCFTQYITKQRKAICPLHKlrpafPESDLPVVQFCVTHYKEPVAETYHTIKKLCEMDYPMDKLEINVLDDGFY-DLENETYSPCAVGTEMTSMLRALVTRIsrghgsphqefsyeapntrrpeaaagslviefkhealpTIRHICRkrPKVSHFKGGNLNNAIfnvlDNDAYQFFAFLDCDMAPTSDFLQLSLPQFFKfangrwipSWEVAMTQAPQAFHN--LIETNG-DDDPLFQQTDVYWRRTMQHLDHWGLVHYYGTNVIMFKPALEDCVGWQYGVLSEDTPTGANLTSLGWQAMYVDQEIAHGLVKDTVVDTLSQRKRWAGGNV 425
                  4445556777775443...566777889999999***99999999999999999999888765222223456999999*************************************33.3333333444444558889999999999999**********************************9999976116789**********73111344557999****************987766222222224579**********8..699995.567788999**************************************************************************************9976 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00021      0.44      13      90 ..      95     178 ..      86     199 .. 0.75
   2 !   14.3   0.1   1.6e-06    0.0032     206     271 ..     360     425 ..     349     452 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00021
    TIGR03937  13 sllwivgavlyylllerkek...lekkekleleevpkvsllvpcyneg.enveetisallklkyp..nleviainDGskDdtae 90 
                  s++  + + + y++++rk     ++   + + +++p v + v+ y e  ++  +ti++l +++yp  +le+ +++DG  D   e
  MMETSP1174-20130828|14051_1  95 SFITRCVCFTQYITKQRKAIcplHKLRPAFPESDLPVVQFCVTHYKEPvAETYHTIKKLCEMDYPmdKLEINVLDDGFYDLENE 178
                  5555555555667777666543233445678899************95378899**********865799*******9886665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.6e-06
    TIGR03937 206 lfrksaleevGyWstdmiteDidvsWklqlaeyeikyePralcwvLmPetlkGlykqrlrWaqGGa 271
                  ++ k ale+  +W+  ++ eD      l   +++ +y  + +++ L+ +t+     qr rWa G  
  MMETSP1174-20130828|14051_1 360 IMFKPALEDCVGWQYGVLSEDTPTGANLTSLGWQAMYVDQEIAHGLVKDTVVDTLSQRKRWAGGNV 425
                  344789********************************************************8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.17s 00:00:00.90 Elapsed: 00:00:00.48
# Mc/sec: 2953.26
//
Query:       MMETSP1174-20130828|14058_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1234.49
//
Query:       MMETSP1174-20130828|14067_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|14072_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.53
# Mc/sec: 522.98
//
Query:       MMETSP1174-20130828|14073_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1174-20130828|14075_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|14074_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 966.35
//
Query:       MMETSP1174-20130828|14071_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-20   70.6  17.4    0.00037   17.5   0.1    7.0  7  TIGR00435 cysS: cysteine--tRNA ligase
    0.00039   16.7   0.0    0.00059   16.1   0.0    1.2  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
     0.0071   14.6   0.1      0.016   13.4   0.1    1.6  1  TIGR02543 List_Bact_rpt: Listeria/Bacterioides repeat


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-06    0.0046     411     457 ..     119     165 ..     105     171 .. 0.83
   2 !   15.3   0.0   1.3e-06    0.0018     416     457 ..     199     240 ..     190     247 .. 0.90
   3 !    7.1   0.1   0.00038      0.52     418     457 ..     282     322 ..     265     327 .. 0.85
   4 !   17.5   0.1   2.7e-07   0.00037     416     458 ..     370     412 ..     355     416 .. 0.87
   5 !    7.4   0.2   0.00031      0.42     416     449 ..     453     486 ..     434     498 .. 0.79
   6 !   11.5   0.1   1.7e-05     0.024     417     457 ..     553     594 ..     535     600 .. 0.85
   7 !    3.8   0.0    0.0039       5.3     418     451 ..     637     670 ..     620     683 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.4e-06
    TIGR00435 411 agsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                   +++  +++ + +l+++r +ar + +++ +D+iR+el ++g+ ++D 
  MMETSP1174-20130828|14071_1 119 LEEQGLDEKRILALLTQRYDARLEGNFDTSDSIREELRELGVNVDDG 165
                  4455456788999******************************9886 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 1.3e-06
    TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                   + + +e+li er +ar++++++ aD+iR +ll +g+ ++D+
  MMETSP1174-20130828|14071_1 199 VTAAAVEELIFERYQARQRQQYRVADEIRAHLLGMGVYIDDN 240
                  567889********************************9997 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00038
    TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellkk.givLeDt 457
                  ++e+ +l+ +r +ar+++++++aD+i +el+++ gi ++D+
  MMETSP1174-20130828|14071_1 282 EEEVTALLDQRCSARRSRDFALADAILKELKEEfGIDVQDR 322
                  678999*********************99986437777776 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 2.7e-07
    TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDtp 458
                   +++el++l+++r +a+ ++++++aD+iRd+l+++gi ++D++
  MMETSP1174-20130828|14071_1 370 MDEDELNRLLADRVRAKLRRDYELADAIRDDLMEEGIHVDDKQ 412
                  456899********************************99985 PP

  == domain 5    score: 7.4 bits;  conditional E-value: 0.00031
    TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellk 449
                   +++++++l++ rsea++++++++aD i  +l+ 
  MMETSP1174-20130828|14071_1 453 ADVAKVDRLVQARSEAKRARDYDLADGIQSRLKA 486
                  4678999**********************99975 PP

  == domain 6    score: 11.5 bits;  conditional E-value: 1.7e-05
    TIGR00435 417 elgeledlieersearkkkelkkaDkiRdell.kkgivLeDt 457
                  ++ge+ +l+ +r+ ar++++++ aD+i+d+l+ + gi ++D+
  MMETSP1174-20130828|14071_1 553 SEGEIVALLDQRALARTARDFNSADAIKDDLKlEYGIDINDR 594
                  6799************************99963667777776 PP

  == domain 7    score: 3.8 bits;  conditional E-value: 0.0039
    TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellkkg 451
                    ++e+l++er e++ +++++k+D i  +l ++ 
  MMETSP1174-20130828|14071_1 637 ILQVEKLLAERLELKFRRNFEKSDMIQSKLRETY 670
                  55799************************98764 PP

>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.3e-07   0.00059     551     585 ..      48      82 ..      34      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.3e-07
    TIGR00578 551 lgkltvsvlkdickaeGlrsgskkqelldalkkhl 585
                  l  l v+ lk++c+++Gl+ g+kk e+l  l+ h+
  MMETSP1174-20130828|14071_1  48 LDGLKVPELKELCRTYGLQVGGKKVEILARLQDHV 82 
                  56799***********************9999885 PP

>> TIGR02543  List_Bact_rpt: Listeria/Bacterioides repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.2e-05     0.016       3      17 ..     180     194 ..     179     205 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
    TIGR02543   3 rtGYtFvGWtgdsaf 17 
                  + GYtF GW gd+a 
  MMETSP1174-20130828|14071_1 180 KHGYTFRGWDGDDAR 194
                  89**********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 1741.24
//
Query:       MMETSP1174-20130828|14081_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 2279.01
//
Query:       MMETSP1174-20130828|14085_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 257.03
//
Query:       MMETSP1174-20130828|14083_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:01.01
# Mc/sec: 780.17
//
Query:       MMETSP1174-20130828|14084_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-22   75.2   0.2    1.5e-14   51.3   0.0    2.0  2  TIGR01060 eno: phosphopyruvate hydratase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.7e-09   1.1e-05     258     303 ..      40      85 ..      16      97 .. 0.80
   2 !   51.3   0.0   3.6e-18   1.5e-14     305     409 ..     131     236 ..     114     249 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.7e-09
    TIGR01060 258 eeksltseelieyleelvekypivsiedglseedwegfaeltkelG 303
                    k+++ e++i+++ e+++++p+vs+ed+++++d e+f ++ ++  
  MMETSP1174-20130828|14084_1  40 GIKTKSGEDMIDMIIEWLKRFPLVSLEDPFDDSDAETFMKFKERFD 85 
                  23478899******************************99988765 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 3.6e-18
    TIGR01060 305 kvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrs..GetedttiadlavalnagqiktGslsrseriakynqLlrieee 409
                  ++qlvG+ + +t +e + +  +k + n++ + l +  t+t  ++  + ak  g+ +++s      et+d+++a+lav+++agq k+G l  +e + kyn+Llri + 
  MMETSP1174-20130828|14084_1 131 RLQLVGNAT-CTTVEDMDRCNDKHTLNTVTLTLAKGQTVTGCIAMCQKAKVLGWCVIVSFEEtfSETTDDFVAHLAVGVKAGQFKAGGLRNAEHMCKYNELLRIATS 236
                  6899*9876.77789999*****************************************875337***************************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 946.55
//
Query:       MMETSP1174-20130828|14089_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 816.18
//
Query:       MMETSP1174-20130828|14091_1  [L=905]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.72
# Mc/sec: 1659.03
//
Query:       MMETSP1174-20130828|14095_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.4   3.2      0.065    9.9   2.2    1.2  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.2   1.6e-05     0.065      84     215 ..      41     170 ..      36     199 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.6e-05
    TIGR03794  84 dvvarieqpelrerlqearekLtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeq..ekrdeadkaeaeyelqtkadeeeletvvaklk 215
                  +vva ++  +       +    t L+++l+ v +  +   +  ++ +  +  a+++ i+ + e+   L+ e ++ +++ +  +++ + + ++   a  ++   + d+ ++a +ey + +  de++l +++ +l 
  MMETSP1174-20130828|14095_1  41 EVVAQLAAQQAALA--VISTSKTSLEGRLKSVEEGRASALDRMKRDNIPETWAMQNVIKPMDERISTLKSEIDREKKAFELLQHQYQDMTLTAMAAVSKDitSSADQYERAFLEY-TSQDEDEHQL-KLLHSLL 170
                  56666654443333..333455899***************************************************999999999888888877666555456788899999999.7777777775.4554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1314.15
//
Query:       MMETSP1174-20130828|14096_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-55  185.4   0.0    5.4e-55  184.9   0.0    1.2  1  TIGR00335 primase_sml: putative DNA primase, eukaryotic-type, small subunit


Domain annotation for each model (and alignments):
>> TIGR00335  primase_sml: putative DNA primase, eukaryotic-type, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.0   1.3e-58   5.4e-55       5     317 ..      70     433 ..      67     440 .. 0.85

  Alignments for each domain:
  == domain 1    score: 184.9 bits;  conditional E-value: 1.3e-58
    TIGR00335   5 klyrelynfkklenfleknekesrd........lknREFafaflekapkRylsFrserdfkafilknaParfyisaayykePrerdaekKgelra...eLiFDiDaddldvkktecdgvkvC..leeakelvlklvetllaeDfGlkDlkivfSGrRGyHvyvkDeevrelgseerreildylaviredkrlalkr...vyspelarsliqlklrfvssela.............rrllkalrdkekieevkkktlknekr.....nwnlikekatsllksvkqd.........kvyekle......elvlkilyrklDakVtkdvirllrlptslHgktglivveve..elesFnPlkdavlk 317
                  ++y +l++  +++ +l+  + + ++        +  RE++f+  + ++ Ry+sFr+  ++++ + k++P ++ i+a++   P+++++   + ++    eL+FDiD+ d+d  +t+c g+  C  ++   + ++++ e +l++DfG++ + +v+SGrRG H++v D+ +r+l +e r  +++yl v+ +d + a+k+   + +p lar l  l++ f s  +                +l  l  +   +++k+++  n  +     +w +  e+   l +s             k+++  e      +lv +  y++lD++V k + +ll+ p ++H+ktg ++v+++  +l+ F+P+  + l 
  MMETSP1174-20130828|14096_1  70 LYYDRLFPYDQMFRWLSYGNDPDKKhpglvkdfFLRREWSFTIADDIYIRYQSFRDASEMRNAMMKRQPHKIDIGAVFSCAPKDHNTVSPASFKPverELVFDIDLTDYDEVRTCCTGASICgrCWSLMSMAIQVLEPALRDDFGFENILFVYSGRRGVHCWVCDPGARSLSNEARTAVVNYLSVATTDAKTAIKKatwPPHPSLARALRILEPLFESHIVPeegqglfaekerwEVILDSLPVDAVAQRLKQRWTRNSDHtdasmKWRELSEEINRLGRSDSSSggptaqkkkKIVQAHElelwkmNLVFHHCYPRLDENVSKAQNHLLKSPWCVHPKTGRVCVPIDprKLNEFDPMAVPTLG 433
                  79999********999865544332233323345689*************************************************999999986677*****************************************************************************************9999999983335699*********99887766656899******99978888999888899999999888887788888888888767777766655667777777777665511111145555569*********************************9999*****9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1286.89
//
Query:       MMETSP1174-20130828|14099_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 402.74
//
Query:       MMETSP1174-20130828|14101_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 228.57
//
Query:       MMETSP1174-20130828|14102_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.7   0.0      0.022   11.5   0.0    1.0  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC


Domain annotation for each model (and alignments):
>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.3e-06     0.022     332     353 ..       6      27 ..       3      42 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.3e-06
    TIGR03998 332 eallPtlAyvgGPGEiaYwael 353
                   ++lP+l +vgGP E+  wa+ 
  MMETSP1174-20130828|14102_1   6 RIWLPDLEFVGGPIELDHWANW 27 
                  689*****************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.53
# Mc/sec: 276.43
//
Query:       MMETSP1174-20130828|14104_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 663.72
//
Query:       MMETSP1174-20130828|14106_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.9   0.2      0.057   11.6   0.2    1.8  1  TIGR01653 lactococcin_972: bacteriocin, lactococcin 972 family


Domain annotation for each model (and alignments):
>> TIGR01653  lactococcin_972: bacteriocin, lactococcin 972 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.4e-05     0.057      29      60 ..      77     108 ..       3     110 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
    TIGR01653  29 qsagggtvwkkyGvdkaYsnYqhnkktHratv 60 
                  +  + gt   ++ +++ +s Y +  + H+++ 
  MMETSP1174-20130828|14106_1  77 TGVEKGTLSPEWYQTFEFSTYLNHDRDHESEL 108
                  4456799999*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 430.91
//
Query:       MMETSP1174-20130828|14105_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 256.84
//
Query:       MMETSP1174-20130828|14109_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 75.42
//
Query:       MMETSP1174-20130828|14103_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.1   0.1    0.00035   17.9   0.1    1.5  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
     0.0075   12.5   0.1      0.015   11.5   0.1    1.4  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.7e-07   0.00035      17      47 ..     689     720 ..     679     725 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.7e-07
    TIGR02349  17 ikkAYrklakkyHPDrnkgekea.eekfkein 47 
                  ikk +rkla+k+HPD+ kg+k+    k+ e++
  MMETSP1174-20130828|14103_1 689 IKKQHRKLARKWHPDKYKGNKDRgARKMNEVS 720
                  9******************8875156788876 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   7.2e-06     0.015      10      37 ..     680     707 ..     674     721 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.2e-06
    TIGR03835  10 idrDadeqeikkafrkLakkyhPDrnka 37 
                  ++++ +   ikk  rkLa+k+hPD+ k 
  MMETSP1174-20130828|14103_1 680 LSPEKQCTWIKKQHRKLARKWHPDKYKG 707
                  666666677***************9664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.73
# Mc/sec: 1354.24
//
Query:       MMETSP1174-20130828|14110_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.0   0.0       0.03   10.6   0.0    1.1  1  TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein


Domain annotation for each model (and alignments):
>> TIGR03960  rSAM_fuse_unch: radical SAM family uncharacterized protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-06      0.03     514     596 ..     216     301 ..     206     303 .] 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.4e-06
    TIGR03960 514 aykkGalfdaWseyfkkdlwkealeelgididfyatrereldevl..PWdfidvgvskkflvre.aekakaekvtpncrekcsgcG 596
                  + +k  ++ +W+   + ++ k+a +elg+di+  ++re+    ++   W ++d+ + k+   r  + +  ++++    r+ c +c 
  MMETSP1174-20130828|14110_1 216 VAEKALVYGSWHMASSAKAVKDAAAELGVDIHDCSNREKTSAKLVeaGWTYLDYIIRKEEASRGrVGRGGRDELDVSFRDACRTCA 301
                  4578889********************************999986336**********9998862568889999999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.70
# Mc/sec: 571.32
//
Query:       MMETSP1174-20130828|14108_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 570.85
//
Query:       MMETSP1174-20130828|14118_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.40
# Mc/sec: 204.58
//
Query:       MMETSP1174-20130828|14117_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|14116_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|14123_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|14121_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 866.99
//
Query:       MMETSP1174-20130828|14125_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-05   20.5   0.1       0.13   10.4   0.0    2.8  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   3.2e-05      0.13      22      35 .]       1      14 [.       1      14 [. 0.92
   2 !    7.2   0.0   0.00031       1.3       1      31 [.      15      45 ..      15      46 .. 0.94
   3 ?   -2.0   0.0      0.27   1.1e+03      15      26 ..      77      88 ..      70      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.2e-05
    TIGR00756 22 lfdeMkergivPda 35
                 l+deM+erg++Pd+
  MMETSP1174-20130828|14125_1  1 LLDEMQERGLEPDV 14
                 689*********96 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00031
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergi 31
                 ++++++i  + +  +   A +++++ +++g+
  MMETSP1174-20130828|14125_1 15 ISFSAVIIVCERTSHHQQADQVYRRAVKAGF 45
                 5899**********************99997 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.27
    TIGR00756 15 rveeAlelfdeM 26
                 +++ +++++++M
  MMETSP1174-20130828|14125_1 77 EFRSGRQILNDM 88
                 566778888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|14127_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 402.41
//
Query:       MMETSP1174-20130828|14126_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-32  110.6   0.0    3.5e-32  109.7   0.0    1.4  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    2.5e-25   87.0   0.0    5.7e-25   85.8   0.0    1.5  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    8.2e-19   65.6   0.0    5.1e-13   46.5   0.0    2.3  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    5.1e-15   53.0   0.0    7.7e-15   52.4   0.0    1.2  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    1.4e-14   51.7   0.0    1.4e-13   48.3   0.0    2.0  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
    1.5e-11   41.7   0.0    2.8e-07   27.6   0.0    2.3  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    1.8e-11   41.5   0.0    1.5e-07   28.6   0.0    3.1  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    2.8e-11   40.7   0.0    1.1e-10   38.8   0.0    1.9  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    3.3e-10   37.2   0.0    4.2e-10   36.9   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    4.1e-09   33.8   0.0    6.8e-09   33.1   0.0    1.3  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
  ------ inclusion threshold ------
      0.014   11.6   0.0      0.022   10.9   0.0    1.2  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   9.4e-35   3.5e-32      40     400 ..      77     469 ..      63     472 .. 0.78

  Alignments for each domain:
  == domain 1    score: 109.7 bits;  conditional E-value: 9.4e-35
    TIGR01265  40 dPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielviealana...ganiLvPrPgfplYetlakalglevrkydllpekdweidldelealaDektva......lvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd.atfvplaklaskv........Pvlslggiskrwl.vPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilek...tpkef..fe....kkikvlkenaelvyeelkeipgltcvkPegamyllvklel.......elleeikdDvdFceklvkEesvillPgsalelen...ylRitltveksvleealeRikeFce 400
                  dP   g ++ ++  + a     ++++  +Y+ s G l+ r+ va +l+++     +++ ++lt G+s a+++ ++ l +     + iLvP P +plY++  + +g  +  y+l  ++dw ++++++   +    +       lv inP+nP+G+  ++d l+ ++ v+++ +l ++aDEvY++ v+gd  +f++  ++ +k+         v++  ++sk+ l   G r G + + + ++   d v+  + kl++  l p+   q A++ +++     ++++  +e     ++  l++ a+ +  +l+e++g+ cv   g+ y + k+ l        + + ++ Dv +c +l+    +   Pgs ++ ++   ++R t+ v++  l   +eRik+F e
  MMETSP1174-20130828|14126_1  77 DPKFAGMFPNDA-IVRAREFLSETKSLGAYTDSRGSLQVRNKVAAFLERRDGLPSDPERIFLTDGASAAVRIGLQFLIRGhgfKDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSITRAIASARKFnicprgLVFINPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYGDaRPFISARQVLKKIggdvlaetEVMTFHTTSKGALgECGLRGGMVELLNINE---D-VRAQMYKLASINLSPNVPGQVAMSVLVQPpvpGDESYelWEsertAVLASLERRANAITAALNELEGVSCVA-AGSLYAFPKITLppaaickAKRDGVSPDVLYCLELLGHAGIATTPGSGFGQKDgtyHFRTTILVSEDKLDAFVERIKAFHE 469
                  555555555443.3344444557888999*******************99999************************954122588**************999999999****************9766654433212233389********************************************6689987554433211112222799*******98835799999887776554...4.55566677777777777777777665553111233332244111146677999*****************97.79******9987333332235567899***********************9865658**********************87 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   1.5e-27   5.7e-25      40     400 ..      77     469 ..      64     472 .. 0.77

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 1.5e-27
    TIGR01264  40 dPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealad.aG..envlvPrPGfplyetlakaldievklynlladedweidlkelesliddktka......livnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg.....atflala....slssevPilslgGlakrllv.PGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktP....qey......fdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel.......ekfkelksdvefveklveeesvfvlPgsifelPg...ylrvvltvpkavleeavsrikefce 400
                  dP   g ++ ++  v+a +   ++++   y+ + G l+ r+++a + + +r   + + + + l+ G+s a+++ ++ l    G  + +lvP P +ply++    ++    +y+l  d+dw ++++ +   i    k       l+  nP+nP+G  ++++ l  ll+++++ +l +lade+y+d v+ +     +  + l     ++ +e  +++   ++k  l   G r G +      ++ +dv+  + kl+   l pn   q a++ ++ + P    ++y       + v+  le  a+ +  al+e+ G++ v   G++y + ki l        k + +  dv ++ +l+    +   Pgs f   +   ++r ++ v++  l   v+rik+f e
  MMETSP1174-20130828|14126_1  77 DPKFAGMFP-NDAIVRAREFLSETKSLGAYTDSRGSLQVRNKVAAFLE-RRDGLPSDPERIFLTDGASAAVRIGLQFLIRgHGfkDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSITRAIASARKFnicprgLVFINPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYGDarpfiSARQVLKkiggDVLAETEVMTFHTTSKGALGeCGLRGGMVE---LLNINEDVRAQMYKLASINLSPNVPGQVAMSVLV-QPPvpgdESYelweseRTAVLASLERRANAITAALNELEGVSCVA-AGSLYAFPKITLppaaickAKRDGVSPDVLYCLELLGHAGIATTPGSGFGQKDgtyHFRTTILVSEDKLDAFVERIKAFHE 469
                  565555544.4445556555567778889*****************99.566667888999**************988752445488*************9999999999*****************99888766532233348999******************************************6555533344441111445566899999999998853799999664...5566667777777777777777776666665433.33322322232111114678999******************9986.7******999863322222455668889*********************764334379*********************76 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.4e-15   5.1e-13      56     216 ..      98     266 ..      75     295 .. 0.82
   2 !   16.8   0.0   1.5e-06   0.00055     336     382 ..     419     466 ..     364     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.4e-15
    TIGR03540  56 ekpenhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpG....divlvpdPgyPvykistllaggepyelPlkeendflPdldaipedvlkkak.......ilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeyka 216
                  e+     y +++G l+ r++va+++++r g+  dpe+  l+   s    + + l f+  G    d +lvp P yP y+ s+ l gg      l+e++d+  ++++i   +++  k       ++f+n P nPt+   +++ +  ++++++++++ ++ d+ y++ v+ + ++
  MMETSP1174-20130828|14126_1  98 ETKSLGAYTDSRGSLQVRNKVAAFLERRDGLPSDPERIFLTDGAS--AAVRIGLQFLIRGhgfkDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSITRAIASARKfnicprgLVFIN-PGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYGDARP 266
                  4455567999*************************9977775444..3445555555444336699**********************999******************998766334334357888.************************************99999765 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.5e-06
    TIGR03540 336 fakklleeagvvvtpGvgfGes.GeGyirisltvseerlkeaverlkk 382
                  ++ +ll +ag+  tpG gfG++ G  ++r ++ vse++l   ver+k 
  MMETSP1174-20130828|14126_1 419 YCLELLGHAGIATTPGSGFGQKdGTYHFRTTILVSEDKLDAFVERIKA 466
                  78899***************86366679*****************986 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.1e-17   7.7e-15      51     257 ..      95     308 ..      71     329 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.1e-17
    TIGR03538  51 lvenleelskyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidrae.kalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeevWkrvq.......llfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddf..krllvfhslskrs.nvPGlrsGfv 257
                  ++++ ++l +y  ++G+ ++r+ +a++lerr  lp+  dper ++   G+  a+    q +i  +  k  +++P P y +y  +  l g+     + ++++++  +++++ + +    +       l+f+  PgnPtG+ l+ ++l+ ll++ ++ ++ + +de y +  + +a + +   ++ +++G d +   ++++fh+ sk +    Glr G+v
  MMETSP1174-20130828|14126_1  95 FLSETKSLGAYTDSRGSLQVRNKVAAFLERRDGLPS--DPER-IFLTDGASAAVRIGLQFLIRGHGfKDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSITRAIASARKfnicprgLVFI-NPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYGDARPFISARQVLKKIGGDVLaeTEVMTFHTTSKGAlGECGLRGGMV 308
                  456778999***************************..9987.566799999999999999987776999************999999998777777778888888888888876543311222336676.6**********************************97655577799***********9876225799*******8735689999988 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.8e-16   1.4e-13      26     218 ..      99     308 ..      76     326 .. 0.76
   2 ?    0.9   0.0       0.1        38     304     336 ..     419     453 ..     409     466 .. 0.75

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 3.8e-16
    TIGR03537  26 vpevsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldp.eeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailretk..i.....vwinyphnptGaeapasylkevaelareygiilasdecyae.iyseekp.asvle.........vglenvlafhslskrs.GmtGyrsgfl 218
                    ++  y    G  ++r+ +a +lerr g+  dp+  ++ + G+  a+  + l fl + +  +  ++++ p yp y       gg+ ++ +l+++d++ l+++++ +ai    k  i     v+in p nptG + + + l     ++++ ++ l++de y + +y + +p  s+ +         ++  +v++fh+ sk + G  G r g++
  MMETSP1174-20130828|14126_1  99 TKSLGAYTDSRGSLQVRNKVAAFLERRDGLPSDPER-IFLTDGASAAV-RIGLQFLIRgHGFKDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSITRAIASARKfnIcprglVFIN-PGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDnVYGDARPfISARQvlkkiggdvLAETEVMTFHTTSKGAlGECGLRGGMV 308
                  55677899999***********************96.66677887666.7888887651556788999***********9999************************9976544223333326666.**********************************9836666566334444111222221233467888888886547778887776 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.1
    TIGR03537 304 yalrll.eeGivvapGeafgageeey.vrvalvpt 336
                  y+l+ll ++Gi  +pG+ fg+ +  y +r +++ +
  MMETSP1174-20130828|14126_1 419 YCLELLgHAGIATTPGSGFGQKDGTYhFRTTILVS 453
                  8888883569**********998777467665554 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.6e-10   2.8e-07      53     220 ..      87     261 ..      84     276 .. 0.76
   2 !   11.7   0.0   5.1e-05     0.019     357     400 ..     422     466 ..     410     468 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 7.6e-10
    TIGR03542  53 ealkeaveelaseetfrGyGpeqGldllreaiaeeeykgr...idpeeifisdGakcdvarllelf....gsdktvavqdPvyPvyvdsavlaGra...gvldddgkykkivylpctkenefiPelpeekkvdi....iylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafis 220
                  +a+ +a e l+++++   y    G+  +r+++a    +      dpe if++dGa + v   l+++    g ++ + v  P yP y  s  l G      +l++d+ +        ++ n+   ++++ +k +i    +++  P nPtG  lt++ql  l+   ++++  +l d  y+  + 
  MMETSP1174-20130828|14126_1  87 DAIVRAREFLSETKSLGAYTDSRGSLQVRNKVAAFLERRDglpSDPERIFLTDGASAAVRIGLQFLirghGFKDGILVPIPQYPLYSASIALYGGIlipYELEEDDDWG-------LNMNSITRAIASARKFNIcprgLVFINPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVY 261
                  567777788999999999*************9986655557688***********9987543333312225578899**********9999998641113455666663.......334445555555555555333368999*********************************987665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.1e-05
    TIGR03542 357 kllkeaevvgtPGsGfGss.GeGfvrlsalgkredivealerike 400
                   ll +a +++tPGsGfG+  G+ ++r + l +++++ + +erik 
  MMETSP1174-20130828|14126_1 422 ELLGHAGIATTPGSGFGQKdGTYHFRTTILVSEDKLDAFVERIKA 466
                  5788999**********8538888*******99999999999985 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     4e-10   1.5e-07      39     201 ..      92     273 ..      83     309 .. 0.74
   2 !    7.2   0.0    0.0013      0.48     313     356 ..     420     464 ..     412     465 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4e-10
    TIGR03539  39 irealaeaadapgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelval.lPtll.GlgagdtvviPevayPtyevgarlagaeavaa....ddlteldp...............ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWegeavsvldpev 201
                   re l+e+    +y    G  ++r+ +++ lerr g +  d+e+++ + G+  +v   l +l+ G g  d +++P   yP y+ + +l g   + +    dd   l+                    l+++n P+nPtG+ l+ ++l +++++ ++++  + +de y + ++ +  + +   +v
  MMETSP1174-20130828|14126_1  92 AREFLSETKSLGAYTDSRGSLQVRNKVAAFLERRDGLP-SDPERIFLTDGASAAVRIgLQFLIrGHGFKDGILVPIPQYPLYSASIALYGGILIPYeleeDDDWGLNMnsitraiasarkfniCPRGLVFIN-PGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYGDARPFISARQV 273
                  577899999999*************************9.789********9999975255544588889****************99999866543111133222222333333333322221234699999.***********************************9999777555555554 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0013
    TIGR03539 313 tvdrlaelGilvaPGdfyge.agkefvrvaltatderiaaaverl 356
                   ++ l + Gi ++PG+ +g+ +g+ + r ++  ++++++a ver+
  MMETSP1174-20130828|14126_1 420 CLELLGHAGIATTPGSGFGQkDGTYHFRTTILVSEDKLDAFVERI 464
                  57789999*******9888626899*******************8 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.9e-13   1.1e-10      49     336 ..     107     442 ..     100     467 .. 0.71

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.9e-13
    TIGR03947  49 eslGgeklraaladrla.....gGdaekvlvthGsseaiylvltallrP.G..devvvvdpayhslselavalgakvrrwplaaerdfrpdlddl.ralvtdr.....trlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvy.da.......eplpeps...aaadrvisfgtlsk.afGlpGlrvGWc...vaPkdllaelvrlrdyltlslsPlv.ellaevav.......ehadalieprlaearan.rrrlldWaaahedvvrl.tvPeGGvaafprf............agladvtdlCerllarhgvlvvPGscfGaadr 336
                   s G+ ++r+ +a+ l+     + d+e+++ t G+s a+ + l+ l+r  G  d ++v  p y   s+  +  g  + ++ l+ ++d+  +++ + ra+++ r     +r +v   P nPtG+ ++e +l+ ll +  + +  ll d+ ++d vy da       ++l + +    a   v++f t sk a G  Glr G +    + +d+ a++ +l    ++ lsP v   +a  ++       +++ +l e  ++   a   rr++  +aa +++  +  v +G + afp++             g++    +C +ll + g+ + PGs fG+ d 
  MMETSP1174-20130828|14126_1 107 DSRGSLQVRNKVAAFLErrdglPSDPERIFLTDGASAAVRIGLQFLIRGhGfkDGILVPIPQYPLYSASIALYGGILIPYELEEDDDWGLNMNSItRAIASARkfnicPRGLVFINPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNVYgDArpfisarQVLKKIGgdvLAETEVMTFHTTSKgALGECGLRGGMVellNINEDVRAQMYKL---ASINLSPNVpGQVAMSVLvqppvpgDESYELWESERTAVLASlERRANAITAALNELEGVsCVAAGSLYAFPKItlppaaickakrDGVSPDVLYCLELLGHAGIATTPGSGFGQKDG 442
                  57888899988886543121225699**********************643559************9999999*******************998356777773333335556667************************************9995341111111334443311123467899*****9779******88752213456777777666...578899977346777766222222223445666555554444145566666666655333146789999****9999999998655444444569*******************9875 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.1e-12   4.2e-10      45     188 ..      98     261 ..      84     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.1e-12
    TIGR01141  45 elkklhrYpdpq.alelkealakylg......veeenillgnGsdelielliraflepg...davlvleptysmYevsakiagaevkevplked..gqedleavleaakekvk.......lvflasPnnPtGnllkreeiekvleev.edalV.VvDeAYieFse 188
                  e k+l  Y d+  +l++++++a++l+       ++e i+l++G+  ++++ ++ ++      d +lv+ p y +Y+ s +++g  ++ ++l+ed  +  +++++  a+++  k       lvf+ +P nPtG+ l+++++  +l    ++ l+ + De Y +   
  MMETSP1174-20130828|14126_1  98 ETKSLGAYTDSRgSLQVRNKVAAFLErrdglpSDPERIFLTDGASAAVRIGLQFLIRGHgfkDGILVPIPQYPLYSASIALYGGILIPYELEEDddWGLNMNSITRAIASARKfnicprgLVFI-NPGNPTGQQLTEDQLASLLTVChQEELClLADEVYQDNVY 261
                  446777888876257999999999999999999*************999888777754335599***************************999998899999988666555433444447887.8********************9876666156****98544 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.8e-11   6.8e-09      54     172 ..     119     260 ..      99     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.8e-11
    TIGR01140  54 reaaaayygld..aesvlavnGaqeaiql.lprllap...krv.lvlaptyseyaralraagaevvels................dleelaael.......eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidft 172
                  ++++ ++ gl+  +e++ ++ Ga +a++  l+ l++    k+  lv+ p+y  y + ++ +g  +  ++                +       +          + lv++nP NPtG+ l++++l++l+  +++++ +l+ DE + d +
  MMETSP1174-20130828|14126_1 119 AAFLERRDGLPsdPERIFLTDGASAAVRIgLQFLIRGhgfKDGiLVPIPQYPLYSASIALYGGILIPYEleedddwglnmnsitrA-------IasarkfnICPRGLVFINPGNPTGQQLTEDQLASLLTVCHQEELCLLADEVYQDNV 260
                  555566666666699***********99876666543111344599999***************9999999*******66644332.......322222234557899*************************************9976 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     6e-05     0.022     244     285 ..     218     257 ..     212     265 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6e-05
    TIGR03801 244 lfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvyg 285
                  l+ +nP nP++ +++e++++ l ++ ++  ++L +l+D+vy 
  MMETSP1174-20130828|14126_1 218 LVFINPGNPTGQQLTEDQLASLLTVCHQ--EELCLLADEVYQ 257
                  6789*******************99977..89*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.97
# Mc/sec: 672.19
//
Query:       MMETSP1174-20130828|14128_1  [L=939]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 2213.17
//
Query:       MMETSP1174-20130828|14131_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-24   83.9   0.0    3.9e-24   83.2   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
    3.9e-11   40.5   0.2    5.7e-11   40.0   0.1    1.3  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   1.9e-27   3.9e-24      49     226 ..      55     248 ..      43     263 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 1.9e-27
    TIGR02037  49 aqqeeeeekveslGSGviisad..gyvlTNnHvvdgakeikvkls.d..grefkaklvgkDek.tDiAvlkieak..kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrsglnked...........yeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveq 226
                  +++e++ +++ s GSG+ ++     ++lT +H  +g   ++v l+ d  + ++ka++vg+ +   D+A+l+i+ +   +l+ ++l  s     G++ +AiG   +++ +Vt GivS+ +   +++++             +++ tDaa+  G SGGpL+  +G+viG+Nt +   +Gg  +  +Ai +n +++ + +
  MMETSP1174-20130828|14131_1  55 RSRERRGRSTASQGSGFAVRCGdeTLILTSAHCLQGGMGLEVSLArDafEVQHKATVVGRGSDgLDLALLRISPAiaGSLTPLELSPS-GCTLGEFSIAIGMAGNVHPAVTLGIVSGVSDFLMKESRaadkekrgpttDAPYVVTDAALAAGMSGGPLLSDEGKVIGVNTLVRPDQGGVGN--YAISANRAREALLE 248
                  4566788999*********975345*******************9442346899*****875428********998888999999877.578************************9765522222234445677776789******************************9998887654..78888888776544 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   2.8e-14   5.7e-11      77     248 ..      65     251 ..      37     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 2.8e-14
    TIGR02038  77 qglGsG..vimskeGyiltnkhvikkadqivvalqdGr...vfeaelvGsdsl.tdlavlkieadn.lptiPlnad.rkpkvGdvvlaiGnPynlGqtitqGiisatG.......rngl.s...svGrqnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklir 248
                   + GsG  v   +e  ilt  h ++    + v+l       + +a++vG  s   dla+l+i      +  Pl+++ +   +G+  +aiG   n+  ++t Gi+s +        r++  +   ++    ++ tdaa+ aG sGG l+  +G+++G+ntl      d+ + G n+ai  + a++ l  +++
  MMETSP1174-20130828|14131_1  65 ASQGSGfaVRCGDETLILTSAHCLQGGMGLEVSLARDAfevQHKATVVGRGSDgLDLALLRISPAIaGSLTPLELSpSGCTLGEFSIAIGMAGNVHPAVTLGIVSGVSdflmkesRAADkEkrgPTTDAPYVVTDAALAAGMSGGPLLSDEGKVIGVNTLVR---PDQGGVG-NYAISANRAREALLEIMA 251
                  444555116667999***********99999999654312246799**9875427*******9654378889987626689************************98622221112222111113344579****************************964...4444444.677777777776666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.62
# Mc/sec: 721.68
//
Query:       MMETSP1174-20130828|14130_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-05   21.9  59.5       0.15    9.8   1.8   10.4 10  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0066        27       8      22 ..      11      26 ..       9      31 .. 0.82
   2 !    4.7   1.2    0.0016       6.6       6      27 ..      36      55 ..      35      56 .. 0.85
   3 !    9.1   0.7   6.3e-05      0.26       6      27 ..      60      81 ..      58      82 .. 0.83
   4 !    8.8   0.0   8.1e-05      0.33       5      22 ..      86     102 ..      83     106 .. 0.89
   5 ?    0.7   1.7     0.028   1.2e+02       7      17 ..     114     123 ..     113     123 .. 0.86
   6 ?   -1.4   0.5      0.13   5.5e+02       6      12 ..     138     144 ..     136     145 .. 0.89
   7 !    6.7   0.4   0.00036       1.5      14      27 ..     251     263 ..     250     264 .. 0.81
   8 !    9.6   0.2   4.4e-05      0.18       7      20 ..     270     283 ..     266     286 .. 0.93
   9 !    9.8   1.8   3.8e-05      0.15       6      25 ..     295     314 ..     295     317 .. 0.87
  10 !    4.4   0.2    0.0019         8       9      21 ..     324     335 ..     322     335 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0066
    TIGR01376  8 snNsakg.sGGAIyat 22
                 + N a++  GGA++ +
  MMETSP1174-20130828|14130_1 11 EANVATKeEGGALFFE 26
                 57999999****9876 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0016
    TIGR01376  6 lFsnNsakgsGGAIyatgkisi 27
                 +F+ Nsa+ sGG  +++  ++i
  MMETSP1174-20130828|14130_1 36 SFEANSAG-SGGTFSSK-HATI 55
                 7*******.*9988888.7776 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 6.3e-05
    TIGR01376  6 lFsnNsakg.sGGAIyatgkisi 27
                 +F n s+++  GGA+ya    +i
  MMETSP1174-20130828|14130_1 60 SFVNSSSTTsTGGALYAR-ESTI 81
                 6888899999*******8.6666 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 8.1e-05
    TIGR01376   5 ilFsnNsakgsGGAIyat 22 
                  +lF++N+a  +GG  +a+
  MMETSP1174-20130828|14130_1  86 TLFCSNTAD-YGGVVHAS 102
                  79*******.***99987 PP

  == domain 5    score: 0.7 bits;  conditional E-value: 0.028
    TIGR01376   7 FsnNsakgsGG 17 
                  F++Nsa  +GG
  MMETSP1174-20130828|14130_1 114 FNSNSAN-YGG 123
                  9******.776 PP

  == domain 6    score: -1.4 bits;  conditional E-value: 0.13
    TIGR01376   6 lFsnNsa 12 
                  +F +Nsa
  MMETSP1174-20130828|14130_1 138 SFDKNSA 144
                  7*****9 PP

  == domain 7    score: 6.7 bits;  conditional E-value: 0.00036
    TIGR01376  14 gsGGAIyatgkisi 27 
                  g+GGAI++t + ++
  MMETSP1174-20130828|14130_1 251 GQGGAIHGT-TSTF 263
                  59*******.7666 PP

  == domain 8    score: 9.6 bits;  conditional E-value: 4.4e-05
    TIGR01376   7 FsnNsakgsGGAIy 20 
                  F++Nsa + GG +y
  MMETSP1174-20130828|14130_1 270 FISNSASHTGGVLY 283
                  ***********998 PP

  == domain 9    score: 9.8 bits;  conditional E-value: 3.8e-05
    TIGR01376   6 lFsnNsakgsGGAIyatgki 25 
                  +F+ N a  sGGA+y++++ 
  MMETSP1174-20130828|14130_1 295 QFNANAASSSGGALYSSQST 314
                  69**************9765 PP

  == domain 10    score: 4.4 bits;  conditional E-value: 0.0019
    TIGR01376   9 nNsakgsGGAIya 21 
                  +Nsa  sGGA y+
  MMETSP1174-20130828|14130_1 324 SNSAS-SGGAMYS 335
                  79999.****886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1068.60
//
Query:       MMETSP1174-20130828|14129_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.56
# Mc/sec: 2092.97
//
Query:       MMETSP1174-20130828|14133_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|14135_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.82
# Mc/sec: 292.95
//
Query:       MMETSP1174-20130828|14136_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1092.42
//
Query:       MMETSP1174-20130828|14134_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.57
# Mc/sec: 1827.37
//
Query:       MMETSP1174-20130828|14139_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.65
# Mc/sec: 357.39
//
Query:       MMETSP1174-20130828|14142_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.8   2.0     0.0023   15.3   1.4    1.2  1  TIGR02837 spore_II_R: stage II sporulation protein R
  ------ inclusion threshold ------
      0.012   13.3   1.2      0.017   12.9   0.8    1.2  1  TIGR02867 spore_II_P: stage II sporulation protein P
      0.016   11.7   0.7       0.02   11.4   0.5    1.1  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02837  spore_II_R: stage II sporulation protein R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.4   1.7e-06    0.0023      22      96 ..      27     109 ..      20     121 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-06
    TIGR02837  22 leaaaakenkaevieekliRlhvlansDsdedqelklkvrD.avlkeltpk.......leglksleearkvikeklpeiekia 96 
                  l++  +k+  + ++e+k+iRlh +  s  +  q++ +kv+   v+ +++++       l+ ++++++ +  +++++  +++i 
  MMETSP1174-20130828|14142_1  27 LKKVMQKDGIEMTVEQKMIRLHTMKTSMKQVKQNIVRKVKKgNVVARISDIhklekmiLHSTNDIQNLQMALQQNDDLLRQIL 109
                  5566678899999**************************85378888876511111113444455555555555555555555 PP

>> TIGR02867  spore_II_P: stage II sporulation protein P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   1.2e-05     0.017      37     108 ..      25      96 ..      23     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.2e-05
    TIGR02867  37 eeLakeLeekGikvivdktvhdalnyeksYeeSretvkkalkenkdlklliDlHRDsvrkkkttveinGekv 108
                    L+k +++ Gi+ +v++++ + +  + s ++ ++ + + +k+ + +  + D+H+  ++  ++t  i+  ++
  MMETSP1174-20130828|14142_1  25 SGLKKVMQKDGIEMTVEQKMIRLHTMKTSMKQVKQNIVRKVKKGNVVARISDIHKLEKMILHSTNDIQNLQM 96 
                  5689999999*********9999999****************************998888888888876665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   1.5e-05      0.02     223     288 ..      26      92 ..      21     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
    TIGR02734 223 alaklaedlggelrlnaeveeietegerataveledgerlea.davvsnaDlvhtykkllreeerrr 288
                  +l+k++++ g+e++++++ ++++t ++++++v+++  ++++  ++v+  +D+++ +k +l++++  +
  MMETSP1174-20130828|14142_1  26 GLKKVMQKDGIEMTVEQKMIRLHTMKTSMKQVKQNIVRKVKKgNVVARISDIHKLEKMILHSTNDIQ 92 
                  78999****************************99999887526777889*******9999887444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       625  (0.152365); expected 82.0 (0.02)
Passed bias filter:                      278  (0.0677718); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.70
# Mc/sec: 243.24
//
Query:       MMETSP1174-20130828|14141_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 500.46
//
Query:       MMETSP1174-20130828|14143_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 740.29
//
Query:       MMETSP1174-20130828|14144_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|14145_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.62
# Mc/sec: 919.67
//
Query:       MMETSP1174-20130828|14146_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 655.39
//
Query:       MMETSP1174-20130828|14147_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:01.23
# Mc/sec: 269.34
//
Query:       MMETSP1174-20130828|14149_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-14   49.6   0.0    7.7e-14   49.4   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    7.2e-13   46.3   0.0    9.8e-13   45.9   0.0    1.1  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.1e-13   45.9   0.0      1e-12   45.6   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.8e-12   43.9   0.0    4.8e-12   43.6   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.1e-12   43.1   0.1    7.5e-12   42.8   0.1    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.3e-12   43.0   0.0    1.3e-11   42.2   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.2e-11   40.3   0.0    6.6e-11   40.0   0.0    1.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.8e-11   40.2   0.0      8e-11   39.7   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      7e-11   39.7   0.1    8.8e-11   39.4   0.1    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      7e-11   39.8   0.1      9e-11   39.4   0.1    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.5e-11   39.7   0.0    7.9e-11   39.6   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      1e-10   39.6   0.1    1.3e-10   39.2   0.1    1.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      1e-10   39.4   0.1    1.4e-10   39.0   0.1    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.5e-10   38.6   0.1    1.9e-10   38.2   0.0    1.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.5e-10   38.7   0.0    6.7e-10   36.6   0.0    1.7  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.9e-10   37.8   0.0    3.6e-10   37.5   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.8e-10   37.3   0.0    5.2e-10   36.9   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.3e-10   37.1   0.1    7.3e-10   36.6   0.1    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.2e-09   36.0   0.0    1.6e-09   35.6   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      2e-09   35.2   0.0    2.5e-09   34.9   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.2e-09   35.0   0.0    2.8e-09   34.7   0.0    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.2e-09   35.1   0.0      3e-09   34.7   0.0    1.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.7e-09   34.3   0.1    3.5e-09   34.0   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    7.5e-09   32.6   0.1      9e-09   32.3   0.1    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.9e-09   33.1   0.1    1.4e-08   32.5   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.6e-09   32.2   0.0    1.4e-08   31.7   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.1e-08   32.9   0.0    1.7e-08   32.3   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.4e-08   31.5   0.0      3e-08   31.2   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.8e-08   31.1   0.0    3.6e-08   30.7   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.4e-08   29.7   0.0    7.4e-08   29.2   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.5e-08   29.1   0.0    1.6e-07   27.8   0.0    1.5  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.4e-07   28.6   0.0    1.7e-07   28.4   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.4e-07   27.5   0.0    3.3e-07   27.0   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.1e-07   27.9   0.0      4e-07   27.6   0.0    1.1  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      4e-07   27.1   0.0    5.3e-07   26.8   0.0    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
      5e-07   26.1   0.0      6e-07   25.8   0.0    1.2  1  TIGR00630 uvra: excinuclease ABC subunit A
    8.7e-07   26.0   0.0    1.1e-06   25.8   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    8.7e-07   25.3   0.0    9.3e-07   25.2   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.4e-06   24.9   0.1    1.6e-06   24.7   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.8e-06   24.8   0.0    3.8e-06   24.4   0.0    1.1  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.8e-06   24.0   0.0    3.5e-06   23.7   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    3.2e-06   23.7   0.1    7.9e-06   22.4   0.1    1.5  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.6e-06   23.1   0.0    7.2e-06   22.7   0.0    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.8e-06   22.5   0.0    9.9e-06   22.2   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    8.6e-06   22.3   0.0    1.1e-05   22.0   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.4e-05   21.7   0.0    1.9e-05   21.2   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.2e-05   20.8   0.0      3e-05   20.3   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.7e-05   21.2   0.1    4.8e-05   20.8   0.1    1.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    0.00046   16.4   0.0    0.00065   15.9   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    0.00057   17.4   0.0    0.00072   17.1   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    0.00096   13.8   0.0     0.0011   13.6   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
     0.0066   11.7   0.0      0.007   11.6   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0073   11.7   0.0      0.008   11.6   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.019   12.2   0.0    1.1  1  TIGR01978 sufC: FeS assembly ATPase SufC


Domain annotation for each model (and alignments):
>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0     1e-15   7.7e-14     125     202 ..      69     147 ..      28     169 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1e-15
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLkllee.lrekrglgillithDlgvvaeladevavmekG 202
                   lsGG lqR+ ia++l + a++++ DeP+++lD  +++ v k +++ ++++ g + ++i hD+ + a +ad +++ +  
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQ 147
                  69******************************************98467888********************9987654 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   1.3e-14   9.8e-13     127     217 ..      51     142 ..      28     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.3e-14
    TIGR02315 127 lelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr.inkekgitvivnlHqvdlakkyadriv 217
                  l +L+ + ++++++  + +LsGG+ qR+aia  l   +++ l+DEP a+LD ++   v ++++r +  + g ++ v  H+  +a + adriv
  MMETSP1174-20130828|14149_1  51 LLVLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIV 142
                  6678999*******************************************************98578999*********************8 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.4e-14     1e-12      84     175 ..      53     145 ..      36     154 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.4e-14
    TIGR01187  84 aLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelka.lqeklGitvvlvthDqeealtmsdriavlr 175
                  +L+  ++e++ +  +  lsGG  qr+a+a ++     ++L+Dep +aLD + r  + + +++ +  +lG    ++ hD   a +m+dri++ +
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYS 145
                  57788999************************************************99998647899***********************975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   6.3e-14   4.8e-12     132     208 ..      67     144 ..      37     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 6.3e-14
    TIGR03265 132 PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkk.lqrklgvttimvthdqeealslaDrivvm 208
                     lsGG  qr+a+a  l +  +++L+DeP +aLD   r+ + + +++ +  +lg  + ++ hd   a ++aDriv+ 
  MMETSP1174-20130828|14149_1  67 VRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIY 144
                  357*******************************************9846899***********************86 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   9.8e-14   7.5e-12     456     527 ..      67     142 ..      26     143 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 9.8e-14
    TIGR02857 456 gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela...egrtvllvaHrlalael.adkiv 527
                   + LSgG+ qRla+A  l  +a++ l+DEP a+LD e+   v + +r+ +    g++ +++ H+  +a++ ad+iv
  MMETSP1174-20130828|14149_1  67 VRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVvshLGKSAFVIEHDFVMAAAmADRIV 142
                  578********************************************9864446899*******988765156665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.7e-13   1.3e-11     118     204 ..      53     142 ..      36     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.7e-13
    TIGR03608 118 vlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke..lkeegktiiivtHdpeva.ekadrvi 204
                  vl+ +++e  ++  + +lsgGe qR+a+a  l +++++ l DEP ++LD ++r +v ++++   + + gk   ++ Hd  +a  +adr++
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVMAaAMADRIV 142
                  67788999999999**********************************************983346789*********877515677776 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   8.7e-13   6.6e-11     124     226 ..      42     146 ..      28     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 8.7e-13
    TIGR02769 124 serkariaellelvelrsevldklP.rqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkk.lkqefGlaylfithdlrlvqkfaqrvlvlde 226
                  s   +r  +ll l  l+ e+++ lP r lsGG lqr++ia  l     + ++de  + ld   ++++ + +++ +  + G +  +i hd+ ++  +a+r+++  +
  MMETSP1174-20130828|14149_1  42 SGLADRLFRLLVLRPLKIEDMKDLPvRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSG 146
                  444567788888889999*******668**********************************99999999987356889********************998754 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.1e-12     8e-11     116     205 ..      55     145 ..      26     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.1e-12
    TIGR00968 116 elvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrk.lhdevkvttvfvthdqeealevadrivvle 205
                  + +++e+++d     lsGG+ qr+a+a  l     v+l+dep +ald + r  + + +r+ +  ++  ++ ++ hd   a  +adriv+ +
  MMETSP1174-20130828|14149_1  55 RPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYS 145
                  346778888888899*********************************98877766666623466777788889**************976 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   1.2e-12   8.8e-11     124     212 ..      56     146 ..      35     161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.2e-12
    TIGR03873 124 rvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela..aegvtvvvalhdlnlaasvcdhvvvldg 212
                    +++++ d  +  lsGGe qr  +a  l    +++l+deP   ld + ++ + +++r  +  + g    v  hd+ +aa+++d++v+ +g
  MMETSP1174-20130828|14149_1  56 PLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVvsHLGKSAFVIEHDFVMAAAMADRIVIYSG 146
                  5677888899999*********************************************998555577888999**************9876 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   1.2e-12     9e-11     115     205 ..      53     144 ..      35     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.2e-12
    TIGR02142 115 vielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLer.lsaelkiPilyvsHsldevarladrvvvl 205
                  v++ L ie + +  +++LsGGe qR ai+  l +   + l+DeP aaLD +++  +   ++r + ++l      + H++   a +adr+v+ 
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIY 144
                  556678888889999*******************99**********************999857899*********************9985 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0     1e-12   7.9e-11     109     197 ..      54     144 ..      30     201 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1e-12
    TIGR01188 109 lelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke..gvtilltthyleeadkladrvaii 197
                  l  +++ + +d +v+ +sgG  +rl +a+ l +  +v+ +DEP   LD + r ++ ++i+  + +  g++ ++  h++  a ++adr+ i 
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVShlGKSAFVIEHDFVMAAAMADRIVIY 144
                  5668999***********************9888888889********************9765557*********************885 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.1   1.7e-12   1.3e-10      98     189 ..      54     147 ..      36     159 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.7e-12
    TIGR03771  98 lervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee..lagegtailmtthdlaeavatcdrvvllngr 189
                  l+  k+++++d pv  lsGG+ qr+ +a  l +  s++l+dep + ld   +  ++++++   ++  g++ ++  hd++ a a++dr+v+  g+
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQ 147
                  7778999***************************************************9863368889*********************98875 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.8e-12   1.4e-10     125     212 ..      53     142 ..      30     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.8e-12
    TIGR02982 125 lleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareq.gttillvthdnri.ldvadriv 212
                  +l+ + +e+  d   + lsgG  qr+aia +l +  ++ l deP aald +    v +++++    + g + +++ hd  +   +adriv
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVSHlGKSAFVIEHDFVMaAAMADRIV 142
                  4666778888888889************************************999999*99976554399999*****8762579****8 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   2.5e-12   1.9e-10     139     221 ..      61     145 ..      35     161 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.5e-12
    TIGR03005 139 kadalpa.qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlaset.dltmllvthemgfarefadrvlffd 221
                   ++ lp+  lsGG+ qr+aia +l     v+l de+++ald e    v +v+rr    +   + +++ h++ +a  +adr++ + 
  MMETSP1174-20130828|14149_1  61 DMKDLPVrSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVSHlGKSAFVIEHDFVMAAAMADRIVIYS 145
                  456677626********************************************97665526788999*************99875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.6   1.2e+02      90     128 ..      14      52 ..       3      55 .. 0.84
   2 !   36.6   0.0   8.9e-12   6.7e-10     112     187 ..      54     131 ..      52     134 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.6
    TIGR01166  90 vafgplnlGlseaeverrvrealaavdisgleerpthll 128
                  v++  + +G +  + +  v++ l+a   sgl++r+ +ll
  MMETSP1174-20130828|14149_1  14 VSYKRQHVGPRYRQFKGTVQDLLEATTQSGLADRLFRLL 52 
                  788888899999999999************999988766 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 8.9e-12
    TIGR01166 112 laavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrk..lreeGktvvisthdv 187
                  l+ ++i+++++ p++ lsgGe +r+aia  +   + v+l+deP+a ld + +  +++++r+  + + Gk+  +  hd 
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDF 131
                  567899*****************************************************9943456788888888885 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   4.8e-12   3.6e-10     113     218 ..      33     140 ..       7     145 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 4.8e-12
    TIGR02324 113 epllelGvereearakakel.larlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike..akargaaligifhdeevrelvadr 218
                  + lle  +++  a    + l l+ l+i e +  l+    sGGe qR+ ia  l ++  + L+deP a+Ld  +r vv ++i++  + + g +   i hd  + +++adr
  MMETSP1174-20130828|14149_1  33 QDLLEATTQSGLADRLFRLLvLRPLKI-EDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVMAAAMADR 140
                  555555555555555555431677999.9999*************************************************9822345677777777877666666666 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   6.8e-12   5.2e-10     139     216 ..      64     144 ..      49     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 6.8e-12
    TIGR00972 139 kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk...ytivivthnmqqaarvsdktaff 216
                  +    sLsGG  qrl+ia +l +   v+L+DeP++aLD ++   + ++i+    +       ++ h++  aa ++d+++++
  MMETSP1174-20130828|14149_1  64 DLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVShlgKSAFVIEHDFVMAAAMADRIVIY 144
                  445679*********************************999999998887544422235678899*999*9999998765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   9.7e-12   7.3e-10     118     203 ..      59     145 ..      36     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 9.7e-12
    TIGR01277 118 iadylerlp.eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkk.ladekkltlllvthslsdaaaiasqvvvve 203
                  i+d+ + lp  +lsGG+ qr+a+a cl  +  ++l+dep +ald   r+ +  ++++ ++++  ++  ++ h+   aaa+a+++v+ +
  MMETSP1174-20130828|14149_1  59 IEDM-KDLPvRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYS 145
                  5554.4455379**************************************99999983457778999999*************98754 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   2.1e-11   1.6e-09     121     209 ..      53     143 ..      36     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2.1e-11
    TIGR02673 121 vlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllke..lnkrGttvivathdeelvervkkrvle 209
                  vl+ + +ed ++   ++lsgGe qR aia  + +  +++l DeP   lD e+   + +++++  +++ G + +v  hd  ++++++ r+++
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVMAAAMADRIVI 143
                  678889999999999*****************9999************************98546789*****************999886 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.3e-11   2.5e-09     106     194 ..      61     150 ..      34     173 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.3e-11
    TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllk.iveearvtvlmvthdvdealllsdrvvmltngpaa 194
                  + +d  +  lsgg  qr+aia +l +   ++l+dep  ald   r  + + + + +v +   ++ ++ hd   a  ++dr+v+ +  p  
  MMETSP1174-20130828|14149_1  61 DMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQPGV 150
                  556667889*********************************9998887766653456667899******************99888865 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.7e-11   2.8e-09     126     218 ..      54     147 ..       6     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.7e-11
    TIGR02211 126 lekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifellle.lnkekntallvvthdlelakkldrvlelkdgk 218
                  l+ +++e+  +     lsGGe qr aia +l +  ++ l deP + ld ++   + +++++ + ++++ +  v+ hd  +a+ +  ++ ++ g+
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQ 147
                  5556666666666789*******************************************984677889999999**********9999998875 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.9e-11     3e-09     127     214 ..      53     143 ..      25     152 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.9e-11
    TIGR03411 127 vleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker...svvvvehDmefvrelaekvtv 214
                  vl+ +++e+ +d    +Ls G+ q+L i++ l   ++++l+DeP a +  e +  +a+++++   ++   s  v+ehD    +++a+++ +
  MMETSP1174-20130828|14149_1  53 VLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVSHlgkSAFVIEHDFVMAAAMADRIVI 143
                  4566788999999***********************************************99765543339*******9999999998854 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   4.7e-11   3.5e-09     128     213 ..      59     144 ..      37     155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 4.7e-11
    TIGR03258 128 lsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillm 213
                  + d+       lsGG  qr+a+a  l     v+l+dep +ald + r  v + +++        +  ++ hd   a ++ad+i + 
  MMETSP1174-20130828|14149_1  59 IEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVSHLGKSAFVIEHDFVMAAAMADRIVIY 144
                  44444333457********************************************98766666677889**************985 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   1.2e-10     9e-09     470     510 ..      68     108 ..      30     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.2e-10
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeel 510
                  ++lSGGe qRla+A  L ++a v l+DEP++ LD e++  +
  MMETSP1174-20130828|14149_1  68 RSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVV 108
                  68********************************9987544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.8e-10   1.4e-08     113     178 ..      55     124 ..      32     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.8e-10
    TIGR01189 113 ekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella....aHlargG 178
                    + +++++dlpv++Ls G  +Rla+a  l + a ++++DEP +alD e   ++a++++    +Hl +  
  MMETSP1174-20130828|14149_1  55 RPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRrwvvSHLGKSA 124
                  5577899****************************************99866666555411115666555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.8e-10   1.4e-08     476     547 ..      69     144 ..      66     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.8e-10
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk...grttlviahrLa.tvlkadrivvl 547
                  +LsGG  qr+aia  +   a ++L+de  +aLd+e    v + + + +    g+ ++vi h ++ +   adriv+ 
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVshlGKSAFVIEHDFVmAAAMADRIVIY 144
                  69****************************************999754322389*******98725678****985 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.3e-10   1.7e-08     133     210 ..      63     143 ..      47     147 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.3e-10
    TIGR00960 133 kalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilellee..vnraGttvlvathdenlveskrkrvlt 210
                  k+lPv  lsgGe qr+aia  +    +++l deP++ ld e+   + +++++  v ++G    v  hd  + + +  r++ 
  MMETSP1174-20130828|14149_1  63 KDLPVrSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVMAAAMADRIVI 143
                  5677636*******************************************98557899*************9999999986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     4e-10     3e-08     117     191 ..      54     129 ..       4     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 4e-10
    TIGR03864 117 larlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvr.eeglsvLWath 191
                  l+ l++++ ++  vr+L+GG+ +r+ ia  l    ++ L+De+++ LD e r  + + +r+ v  + g s     h
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVsHLGKSAFVIEH 129
                  56789999999******************9999999***********************98764044555555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.8e-10   3.6e-08     114     203 ..      54     144 ..      36     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.8e-10
    TIGR01186 114 lklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvk.lqkklqktivfithdldealrlgdrivil 203
                  l+ + +e+ +d     lsGG  qr+ +a  l +   ++l+de+ +ald   r  + + + + + ++l k+   i hd+  a  ++drivi 
  MMETSP1174-20130828|14149_1  54 LRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIY 144
                  6677788888888899**************************************99999873567889*********************96 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   9.8e-10   7.4e-08     440     517 ..      66     148 ..      58     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 9.8e-10
    TIGR03719 440 kvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeall.....efaGcavvishdrwfldriathilafegds 517
                   v +lsGGe +r+ +a  l + + v+l+deP+  ld e    + + +      ++  +a+vi hd  +   +a  i+ + g+ 
  MMETSP1174-20130828|14149_1  66 PVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRrwvvsHLGKSAFVIEHDFVMAAAMADRIVIYSGQP 148
                  5889*********************************9877777766511111456789********9999**9999999875 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2        93     237     279 ..      14      54 ..       8      59 .. 0.81
   2 !   27.8   0.0   2.1e-09   1.6e-07     602     674 ..      68     144 ..      33     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.2
    TIGR03375 237 learpasvGsfasqlrefesvrdfltsatltalvDLpfvllfl 279
                  ++ +++ vG   +q++   +v+d+l ++t + l+D  f ll+l
  MMETSP1174-20130828|14149_1  14 VSYKRQHVGPRYRQFKG--TVQDLLEATTQSGLADRLFRLLVL 54 
                  56677777777777775..799*************99999987 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 2.1e-09
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella...dkTlvlvtHrtslL.elvdriivl 674
                  +sLSgG  q +a+a  l +  +++l+DEP++alD ++   + + +++++    +k   ++ H   +   ++dri++ 
  MMETSP1174-20130828|14149_1  68 RSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVshlGKSAFVIEHDFVMAaAMADRIVIY 144
                  79*********************************************987678999******988752699999985 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.3e-09   1.7e-07     109     259 ..      36     188 ..      28     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.3e-09
    TIGR02314 109 lentpkekikrkvtellalvgl..sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellke.inrrlgltillithemdvvkricdevavidkgeliekgtvseifshpktelakkfirstldlsipedyqerlqe 259
                  le+t++  +  ++  ll l  l   d kd     lsgg+ qr+aia  l +   v+l de ++ald      + ++++  +  +lg + ++i h++ +   + d++ + ++   +e  + + +   p  +   k +  t+  + p++y+ r+++
  MMETSP1174-20130828|14149_1  36 LEATTQSGLADRLFRLLVLRPLkiEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQPGVECTASAPVGLAPGFNRFLKQLSVTFRRD-PDNYRPRINK 188
                  6788888899999999999665226888888899*********************************99998888887537899*********************99998888888877777766666665555556666554.6666666655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.4e-09   3.3e-07     470     541 ..      69     144 ..      65     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.4e-09
    TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk...gRttlviahRLs.tiekaDrivvl 541
                   LsGG  qRlaia  l   a + ++De  +aLD e    v + + r      g+ ++vi h        aDriv+ 
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVshlGKSAFVIEHDFVmAAAMADRIVIY 144
                  69*********************************999999999986532237999*****875156789999875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.2e-09     4e-07     121     205 ..      59     144 ..      31     156 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 5.2e-09
    TIGR03410 121 lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvike.lakekdlaillveqvldfaleladrylvl 205
                  +++m++     LsGG  q laia  L t   ++l+DeP+  +       ++kvi++ + ++ + +  ++e+ + +a ++adr+++ 
  MMETSP1174-20130828|14149_1  59 IEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIY 144
                  67888889999******************************999888889999987466778999*****************9875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   6.9e-09   5.3e-07     124     215 ..      58     150 ..      45     162 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 6.9e-09
    TIGR01288 124 rleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll..argktilltthlmeeaerlcdrlcvleagrkia 215
                  ++e   d +v +lsgg  +rl++a +l     ++++dep++ ld   r ++ + +r  +   +gk+ ++  h +  a  + dr++ + +g+  +
  MMETSP1174-20130828|14149_1  58 KIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVvsHLGKSAFVIEHDFVMAAAMADRIV-IYSGQPGV 150
                  678899**********************************************99997652258*********9999999****85.55665555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   7.9e-09     6e-07     825     900 ..      66     141 ..      19     153 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 7.9e-09
    TIGR00630 825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv..dkGntvvviehnldvi.ksaDyi 900
                  p+ +LsGGe qr+ +a  L        ++++DeP++ L  +    + +v++r v  + G++  vieh++ +   +aD i
  MMETSP1174-20130828|14149_1  66 PVRSLSGGELQRLAIAVCLGT---PASVFLIDEPSAALDCEQRVVVAKVIRRWVvsHLGKSAFVIEHDFVMAaAMADRI 141
                  456677777777777777653...3456777777777777776667777776432256777777777654321344544 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.4e-08   1.1e-06     154     248 ..      59     154 ..      41     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.4e-08
    TIGR03415 154 laeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdelle.lqkklkktivfvshdldealklGnriaimegGrivqlgt 248
                  +++ +d  v  lsGG  qr+ +a  + t a ++l+deP +ald   r  +   + + + ++l k    + hd+  a  + +ri i  g   v + +
  MMETSP1174-20130828|14149_1  59 IEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRIVIYSGQPGVECTA 154
                  56777888999*********************************99998887776635799**********************9988766666655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-08   9.3e-07     614     664 ..      68     118 ..      32     147 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.2e-08
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgct 664
                  + lsGG+ qRl iA  L +  s+ ++DE  +aLD e    + + +rr  ++
  MMETSP1174-20130828|14149_1  68 RSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVS 118
                  679**********************************99999999996544 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.1e-08   1.6e-06     396     475 ..      62     143 ..      29     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.1e-08
    TIGR02633 396 spdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqla..qeGvaiivvsselaevlGlsdrvlv 475
                    dlp+ +lsGG+ q+  +a +l +   v+++dep+  +d   +  + k+i + +  + G +  v+  ++     ++dr+++
  MMETSP1174-20130828|14149_1  62 MKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVvsHLGKSAFVIEHDFVMAAAMADRIVI 143
                  3589999999999999999999999999999999999999999999999998654115688888999998888889999765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     5e-08   3.8e-06      95     205 ..      25     144 ..      16     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5e-08
    TIGR03522  95 ylefsaalyklkgrk....lkkrveelielvGlkaeqhkki..galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.....iakdktvilsthimqevealcdrviii 205
                  y +f++++ +l + +    l +r+ +l+ l  lk e+ k +    ls G  qr  +a +l    +v+++deP++ ld +q v + +vi++     ++k   vi    +m    a+ dr++i 
  MMETSP1174-20130828|14149_1  25 YRQFKGTVQDLLEATtqsgLADRLFRLLVLRPLKIEDMKDLpvRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvvshLGKSAFVIEHDFVM--AAAMADRIVIY 144
                  77888888877654411114567778888889999*999852279***************9999****************99988877652111156666666555565..67999998885 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.6e-08   3.5e-06     164     211 ..      67     114 ..      49     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.6e-08
    TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkk 211
                  v++lSgGe +Rla+a+ l t  +++++DEP + LD      v kv+++
  MMETSP1174-20130828|14149_1  67 VRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRR 114
                  68**************9999999*************999999999986 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1     1e-07   7.9e-06     581     655 ..      62     142 ..      30     147 .. 0.69

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1e-07
    TIGR03797 581 visegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRi.....viAHRLS.Tirnadril 655
                  + +    +lSGG  QRl iA  l +   ++l+DE   ALD +   +V + + +  v+ +     vi H      + adri+
  MMETSP1174-20130828|14149_1  62 MKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVSHLgksafVIEHDFVmAAAMADRIV 142
                  55556789*********************************9999999888775554322222266665431344566665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   9.5e-08   7.2e-06     471     531 ..      69     132 ..      60     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 9.5e-08
    TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaid..al.rknrttfiiahrls 531
                   lsgge qrlaia  +   a ++++de ++ald e  + v + i   ++ +  +++f+i h + 
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRrwVVsHLGKSAFVIEHDFV 132
                  69***********************************999999862223134678888888754 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07   9.9e-06     167     498 ..      68     141 ..      53     157 .. 0.59

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.3e-07
    TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakflesvsevekekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilk.areeleetfvivshdmdfvlevcdra 498
                  r                                                                                                                                                                                                                                                                    ls Ge  r+a+a  l     + ++dep+ ++d   +v va+ i +     l+++  ++ hd  +   + dr+
  MMETSP1174-20130828|14149_1  68 RS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwVVSHLGKSAFVIEHDFVMAAAMADRI 141
                  44...................................................................................................................................................................................................................................................................555555555555555555555555555555555555555555554233455555555555555555555554 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-07   1.1e-05     610     681 ..      68     144 ..      61     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.4e-07
    TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldl...ltekkiven.llklkdktiifvahrlsva.kksdkiivl 681
                   s+sgG  qrla+a +l +++ v+++de ++ ld    ++  k++ + +++   k+   + h + +a  ++d+i++ 
  MMETSP1174-20130828|14149_1  68 RSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCeqrVVVAKVIRRwVVSHLGKSAFVIEHDFVMAaAMADRIVIY 144
                  589*******************************6333445555655144555788888999877651567777765 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.5e-07   1.9e-05     454     525 ..      69     143 ..      66     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-07
    TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke..lkarkitvvvithrps.llelvdkilv 525
                  +LsgG  qR+a+a  l     + ++DeP a LD e  + +ak + +  + + + ++ vi h    + +++d+i++
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRwvVSHLGKSAFVIEHDFVmAAAMADRIVI 143
                  7************988544456678*******************9744567788999999986515567788776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     4e-07     3e-05     593     663 ..      69     143 ..      65     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4e-07
    TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick...grtviiiahrl.stvraadrilv 663
                  +lsGG  qr+a+a  l +   ++++de  +ald e   v+ + +r+      g+   +i h +  +   adri++
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVshlGKSAFVIEHDFvMAAAMADRIVI 143
                  69****************99****************999998887643212377888888865145566777765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   6.3e-07   4.8e-05     130     212 ..      57     145 ..      33     156 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6.3e-07
    TIGR02323 130 veidaarikp.aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll...llrglvrelglaviivth.lavarllaqrllvmk 212
                  ++i+  +  p +++sGG  qrl ia  l t   + ++ ep+  l   q  ++   + r +v +lg ++ ++ h + +a  +a+r+++  
  MMETSP1174-20130828|14149_1  57 LKIEDMKDLPvRSLSGGELQRLAIAVCLGTPASVFLIdEPSAALDCEQRVVVakvIRRWVVSHLGKSAFVIEHdFVMAAAMADRIVIYS 145
                  55655555453789************999977766669*****96666554445255667889**********999999*****98765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.5e-06   0.00065     617     686 ..      69     143 ..      67     151 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.5e-06
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.....sksaksrtvlliahrLstvekadkilvl 686
                   lsgG  qr+AiA  L     v ++De  +ALD e   ++ +       s+ +++  +i h   ++    + +v+
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKvirrwVVSHLGKSAFVIEHDFVMAAAMADRIVI 143
                  59****************99**************65555444332344566788888888887766554444444 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.4e-06   0.00072     107     196 ..      52     143 ..      21     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.4e-06
    TIGR03740 107 evlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf..pekGitvilsshilsevelladhiGi 196
                   vl+ +++e+++   ++ +s G  qrl ia++l     ++++deP+  ld      + ++i+ +  ++ G +  +  h +     +ad i i
  MMETSP1174-20130828|14149_1  52 LVLRPLKIEDMKDLPVRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWvvSHLGKSAFVIEHDFVMAAAMADRIVI 143
                  478888999999999*******************999*************987777777777541145566777777777777778887754 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.5e-05    0.0011    1059    1141 ..      67     153 ..      47     181 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-05
    TIGR01257 1059 aqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky...rsgrtiimsthhmdeadllgdriaiis.qgrlycs 1141
                    + lsgg  ++l++a+++   a v ++dep++ +d   r  +  ++ ++   + g++  +  h +  a  + dri i s q  + c+
  MMETSP1174-20130828|14149_1   67 VRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWvvsHLGKSAFVIEHDFVMAAAMADRIVIYSgQPGVECT 153 
                   6889***9999*******99****************9999999988776222468999999999999999*****998745556664 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.2e-05     0.007     760     834 ..      69     143 ..      61     211 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.2e-05
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllk.nktrilvthgisylpqvdviivl 834
                   lsgg+ qr+++a ++ + a ++l+d+p +a+d+   + +  kvi    + + +k+  ++ h + +   +   iv+
  MMETSP1174-20130828|14149_1  69 SLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCE-QRVVVAKVIRRWVVSHlGKSAFVIEHDFVMAAAMADRIVI 143
                  59*******************************86.3445555555444432257777777776665544333333 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00011     0.008     207     255 ..      67     115 ..      33     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00011
    TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkts 255
                  vR +sGGe +R++ia  l ++a++ ++D+ +  LD    + ++k+++  
  MMETSP1174-20130828|14149_1  67 VRSLSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRW 115
                  6666666666666666666666666666666666666666666666543 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00025     0.019     145     210 ..      70     137 ..      56     147 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00025
    TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree..ekalliithyerlleli 210
                   sGGe +r  i   +    ++ ++De  + lD +   +va+++ ++  +   k+  +i h   +  ++
  MMETSP1174-20130828|14149_1  70 LSGGELQRLAIAVCLGTPASVFLIDEPSAALDCEQRVVVAKVIRRWVVShlGKSAFVIEHDFVMAAAM 137
                  79*********998888889999**********************98775678999999987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        54  (0.0131643); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              54  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.68
# Mc/sec: 415.38
//
Query:       MMETSP1174-20130828|14150_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.57
# Mc/sec: 320.87
//
Query:       MMETSP1174-20130828|14151_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-23   80.0   0.0    2.2e-23   79.9   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0045   14.3   0.0     0.0069   13.7   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   1.1e-26   2.2e-23       1     198 [.      35     229 ..      35     283 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 1.1e-26
    TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsG...eaed.gllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevl 198
                  etg+ +a+k +R ++  +e      r ei l ++L hPniv+ l      ea+    lF   e+v+G  l +++++ G+++ +   + ++ +L +l   hd+  +hRDLk  n+++s ++   +ak+ DFG +  ++p+        +   + + G+P + aPeq++ e    k+D++a G + l   tG+   +   v +++
  MMETSP1174-20130828|14151_1  35 ETGELIAVKTVRVEKHADEGALEEARMEIDLMKELIHPNIVQWLGAEmeeEADGgKKLFILQEWVPGGSLSDLVKQYGPVSLTVMRNYLTDILRGLEYLHDHMTMHRDLKGGNVLISDRG---QAKLGDFGASKrMGPDGT-----LAETHHSLKGTPYFMAPEQMKQEDCGRKADIWAVGGLALFMATGDAPWKVCKVTNIY 229
                  69999*********999999**********************996431113333148************************************************************887...69******9862444433.....233456778**************************9999999998766666666555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.3e-06    0.0069      74     138 ..      94     166 ..      85     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.3e-06
    TIGR03724  74 ivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  i+ e + g  l+dl+++          ++l+++ + +  lH++  +h Dl   N++++  +++ l DfG +k+
  MMETSP1174-20130828|14151_1  94 ILQEWVPGGSLSDLVKQYGPvsltvmrNYLTDILRGLEYLHDHMTMHRDLKGGNVLISdRGQAKLGDFGASKR 166
                  6667889999999999976688888889999************************99625688899*998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 887.09
//
Query:       MMETSP1174-20130828|14152_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 354.90
//
Query:       MMETSP1174-20130828|14156_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.1   0.1      0.039   12.0   0.0    1.0  1  TIGR00320 dfx_rbo: desulfoferrodoxin


Domain annotation for each model (and alignments):
>> TIGR00320  dfx_rbo: desulfoferrodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-06     0.039      22      62 ..      12      52 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.5e-06
    TIGR00320 22 agagelvccnqpmkllkekttdaakekhvpviektgngvkv 62
                 a + +++c +++m+ +  +t+  +k+k+   ++++++g+k 
  MMETSP1174-20130828|14156_1 12 ADKEKMICPEEDMEAFLMRTCRFCKDKKSTAVKQEAGGIKT 52
                 4567899*****************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|14161_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 307.02
//
Query:       MMETSP1174-20130828|14159_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1361.37
//
Query:       MMETSP1174-20130828|14158_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-36  123.0   0.1    3.7e-36  122.8   0.1    1.0  1  TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit
    1.1e-05   23.8   0.2    1.9e-05   23.0   0.1    1.3  1  TIGR02523 type_IV_pilV: type IV pilus modification protein PilV
    7.3e-05   20.5   0.1     0.0001   20.0   0.1    1.2  1  TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B


Domain annotation for each model (and alignments):
>> TIGR01145  ATP_synt_delta: ATP synthase F1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.1   2.7e-39   3.7e-36       3     172 .]      54     222 ..      52     222 .. 0.97

  Alignments for each domain:
  == domain 1    score: 122.8 bits;  conditional E-value: 2.7e-39
    TIGR01145   3 rpYakAlfelAeekssleevkeelnfvkevlknekelkkllsnPlisaekkkelikkvl.geqldesslnllllLverkRlaalpdileeFlklskeaeqtaevevisavalteeqqakiaeklekklkakkvklalkvdksligGviikigdkviDgsvrgqLkrlsrqL 172
                   +Ya+A +  A ++  l+ev++el   k vl+++k++ ++l nP + + +k + i+k++ g++ + +++nl+  ++ ++R+a  +++++ +++l+k+++ ++++ v+sa++lt++q++k++e+l+ +l+   v + + vd+s++gGv++++gdk +D sv+++++  +r+L
  MMETSP1174-20130828|14158_1  54 ARYANATYAAASKQGLLAEVETELLGFKMVLEKNKAFGDFLGNPTVPRGDKVSSIEKIFeGDKTSMITQNLMSTMAANNRIAEADKVVDAYVTLMKAQRGEVDAVVTSAAPLTKAQIKKVTEALKTQLGD--VSISTVVDPSILGGVTVQVGDKFMDLSVSSKINSYARAL 222
                  69********************************************************96799******************************************************************9..********************************9988875 PP

>> TIGR02523  type_IV_pilV: type IV pilus modification protein PilV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.4e-08   1.9e-05      42     135 ..     116     201 ..     103     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.4e-08
    TIGR02523  42 iasqlaynlldrmranpkalsdkkyktatalastklsakasdcatsaateanaaaeadlkewlselknalpdgagsikadsdcdnkangevvvk 135
                  + s++++nl+  m an  +++++k   +  +   +l   + +  +++ t+a   ++a++k+ +++lk++l d+ +s+++d     +  g v+v+
  MMETSP1174-20130828|14158_1 116 KTSMITQNLMSTMAANNRIAEADKVV-DA-YV--TLMKAQRGEVDAVVTSAAPLTKAQIKKVTEALKTQLGDVSISTVVD----PSILGGVTVQ 201
                  689*************8888777666.33.33..5677777777888888888999*******************99998....3455555555 PP

>> TIGR03321  alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   7.4e-08    0.0001     153     240 ..     130     217 ..     109     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 7.4e-08
    TIGR03321 153 fvkrlrtldeeekaalaea.lkesgeevlvrsafeLpeeqrekikktiretlkeeiklrfetepdlisGieltagGqklaWsvedyLes 240
                   ++r+++ d+   a ++   ++ ++++++v sa +L+++q +k++++++ +l+ +++++  + p++ +G+ +++g + +  sv+++++s
  MMETSP1174-20130828|14158_1 130 ANNRIAEADKVVDAYVTLMkAQRGEVDAVVTSAAPLTKAQIKKVTEALKTQLG-DVSISTVVDPSILGGVTVQVGDKFMDLSVSSKINS 217
                  468999999988888886515667789*************************8.79*******************99999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 781.51
//
Query:       MMETSP1174-20130828|14163_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.0   0.1    3.3e-06   24.5   0.1    1.2  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family


Domain annotation for each model (and alignments):
>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   7.9e-10   3.3e-06     147     201 ..       2      56 ..       1      80 [. 0.90

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 7.9e-10
    TIGR01275 147 iPvGGsnslGalGyveavleiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsa 201
                  +P GG n+ G lG v  +le+aeql+    ++   +   +Gsg t++Gl +G+  
  MMETSP1174-20130828|14163_1   2 LPLGGNNPAGVLGQVSGALELAEQLERGEVLDPKRLYLPVGSGCTVSGLIIGVAL 56 
                  699*********************9988889999******************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1113.66
//
Query:       MMETSP1174-20130828|14164_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:01.01
# Mc/sec: 446.93
//
Query:       MMETSP1174-20130828|14172_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.49
# Mc/sec: 277.45
//
Query:       MMETSP1174-20130828|14170_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 837.98
//
Query:       MMETSP1174-20130828|14177_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    9.8   4.8       0.16    9.8   2.8    1.3  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.64    6.2  10.1       0.93    5.7   7.0    1.2  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8   7.7e-05      0.16      52     166 ..     112     228 ..      79     241 .. 0.57

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.7e-05
    TIGR03499  52 deeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae..............eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke 166
                  +eee  ++++  ++ + a+ee++ + +++a+++  ++++ +e +++ +          +              e+l++ +++l e+++ ++ ++ ++++++ +++++ ++ ++  s   a++ ++++++
  MMETSP1174-20130828|14177_1 112 EEEE--RTSTGLASQQTAQEEKDDSHKQPADSPSHSKQDEKEDNNSDE----------DysnddysnddfsevESLQESMEELSEIISGEVITAGSSHNSEGGDDFFGNMSRSAASSASADRGASDIPH 228
                  3333..222222222222222222222222222222221111111111..........12233456566777899999999999999888887766888888888888888888887777777766666 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.0   0.00045      0.93      77     138 ..     124     179 ..     100     189 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00045
    TIGR03490  77 kskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdldklkkel 138
                  +++  e+k+d  k++ +   + k+++k d  +++de+      +++  ++dfs++++l++++
  MMETSP1174-20130828|14177_1 124 QQTAQEEKDDSHKQPADSPSHSKQDEKED--NNSDED----YSNDDYSNDDFSEVESLQESM 179
                  23334444444433333322333333444..344444....4556678899*****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.59
# Mc/sec: 590.60
//
Query:       MMETSP1174-20130828|14180_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 803.93
//
Query:       MMETSP1174-20130828|14178_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|14181_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       716  (0.174549); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.18s 00:00:01.03 Elapsed: 00:00:00.81
# Mc/sec: 783.79
//
Query:       MMETSP1174-20130828|14186_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.7   2.4        2.2    6.0   0.0    3.8  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0   0.00053       2.2       4      14 ..       8      18 ..       7      19 .. 0.92
   2 ?   -2.3   0.5      0.22   8.9e+02       8      14 ..      73      79 ..      73      80 .. 0.80
   3 ?   -0.3   0.0     0.049     2e+02       9      15 ..     106     112 ..     106     112 .. 0.87
   4 ?    2.4   0.0    0.0071        29       3      14 ..     222     233 ..     222     233 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00053
    TIGR02167  4 gCssLtsLDlS 14
                 gC +Lt LDlS
  MMETSP1174-20130828|14186_1  8 GCRALTHLDLS 18
                 9*********9 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.22
    TIGR02167  8 LtsLDlS 14
                 L +LDlS
  MMETSP1174-20130828|14186_1 73 LSTLDLS 79
                 569***9 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.049
    TIGR02167   9 tsLDlSn 15 
                  +sLDlS+
  MMETSP1174-20130828|14186_1 106 KSLDLSG 112
                  79***95 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.0071
    TIGR02167   3 sgCssLtsLDlS 14 
                  +g++sL  LD+S
  MMETSP1174-20130828|14186_1 222 RGMTSLVRLDVS 233
                  589********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|14188_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 609.66
//
Query:       MMETSP1174-20130828|14185_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    2.9   8.4        5.4    2.3   5.8    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   5.8    0.0013       5.4     920     989 ..     318     389 ..     302     409 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0013
    TIGR00927 920 eeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedek..GvdgeggsdGGdseeeeeeeeeeeee 989
                  +  +  +++++    ++++++++   g+ e +a+n++  k++    G++  +g+ G +s ee+e+e+e+  +
  MMETSP1174-20130828|14185_1 318 RRRKLSEDSDKYRRAQQNQRKAQRAGGNMEQTAHNHKRFKDGAVavGAKASEGGGGAQSSEEQENEDEKRAQ 389
                  4444444555566677888888889999999******99999861145555566666665555555553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 2343.61
//
Query:       MMETSP1174-20130828|14191_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1174-20130828|14190_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-28   95.5   0.4    7.5e-28   95.2   0.2    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0043   15.1   0.1     0.0079   14.3   0.0    1.4  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.017   11.3   0.1      0.021   11.0   0.1    1.0  1  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.2   5.5e-31   7.5e-28       3     159 ..       9     164 ..       7     169 .. 0.91

  Alignments for each domain:
  == domain 1    score: 95.2 bits;  conditional E-value: 5.5e-31
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaepiielsaetgknidklf 159
                  +ik++++G+++vGK++Ll +++ ++ +  +   +++ d+  + i  dGk++k++++DTaGqe+f+ i+  y+r ++++l v+d++ +  +++++  ++  +i+++a+   v  il +nK+D  d    + ++ k+l+++ +  +++e+sa++   +++ f
  MMETSP1174-20130828|14190_1   9 QIKLLMIGDSGVGKTCLLMRYANDS-FSPSFITTIGIDFKIKNIDLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDR-GSFNSIR-NWISQIKQHAD-VHVNKILIGNKCDMDDqrvITYEEGKKLAQEIEDMQFFETSAKNAIDVESGF 164
                  69***********************.6666669******999*********************************************.*******.***********.****************995445555556666777779*******99999876 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.8e-06    0.0079       2     131 ..      11     158 ..      10     166 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.8e-06
    TIGR02528   2 rimliGsvgcGkttLtqaLkgeeik..ykktqaveykdkaiDtPGeylenrryYsa......Llvta..adadvivlvqsatdees..llspgfasifak.....eviglvtkidlaeadkei.erakelLeeagaekiFeissvdek 131
                  ++++iG +g Gkt L  +  + +    +  t  +++k k iD  G  ++ + + +a       ++t+    a+ i lv+++td+ s   +   +++i ++     ++i +  k d+ ++ +   e  k+l +e    + Fe+s+++  
  MMETSP1174-20130828|14190_1  11 KLLMIGDSGVGKTCLLMRYANDSFSpsFITTIGIDFKIKNIDLDGKRIKLQIWDTAgqerfrTITTSyfRGAQGILLVYDVTDRGSfnSIRNWISQIKQHadvhvNKILIGNKCDMDDQRVITyEEGKKLAQEIEDMQFFETSAKNAI 158
                  789****************9998752277999***************99999977644444334443235799999999999976511344445554433211134566778888886443221333344444455677777777665 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.6e-05     0.021      59     190 ..      47     182 ..      39     187 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
    TIGR01393  59 rlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalek..dlei..iPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpaPkgdkeapl 190
                  ++k  + dg++ +l++ dt G   f    +  +  ++G ll+ d +      ++ n    +++  d+++  i + nk d+    v ++++  +    ++ ++    sak+ i++e  + ai ++v    +++  p+
  MMETSP1174-20130828|14190_1  47 KIKNIDLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRGSFNSIRNWISQIKQhaDVHVnkILIGNKCDMDDQRVITYEEGKKLAQEIEDMQFFETSAKNAIDVESGFVAIAREVKDRLTADGVPV 182
                  44444668999***************999999**************99999999998888876223333337777******99999999888888899999***************99999999987766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 757.99
//
Query:       MMETSP1174-20130828|14193_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 876.54
//
Query:       MMETSP1174-20130828|14192_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1484.88
//
Query:       MMETSP1174-20130828|14197_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 524.29
//
Query:       MMETSP1174-20130828|14203_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 921.34
//
Query:       MMETSP1174-20130828|14199_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1862.51
//
Query:       MMETSP1174-20130828|14205_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.57
# Mc/sec: 596.23
//
Query:       MMETSP1174-20130828|14208_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 460.67
//
Query:       MMETSP1174-20130828|14207_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1174-20130828|14211_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|14209_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0006   18.5   0.0     0.0021   16.7   0.0    1.9  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.026   12.1   0.0        3.4    5.2   0.0    2.4  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family


Domain annotation for each model (and alignments):
>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-06    0.0021       1     129 [.      38     153 ..      38     155 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
    TIGR01681   1 kvivfDlDnTLwtdeedvvkedpiedieltevtikeirdvLqelkknGvllalaSknddeevakellkikedYfdvilpkaelfldltigkrlpKskrlveilkkln...svlklksilfvDDlavnneevd 129
                  k+i fD D+TL  +    +++++     lt ++ + +    + ++k++  l +   + + + +k+++++ ++      +  ++f+++ ++  ++K +   + + + +    ++k+ ++++vDD  +++  v+
  MMETSP1174-20130828|14209_1  38 KCILFDYDSTLNPG----QGNNS-----LTTERAAMLGGYFTRWRKENPSLQIFVLT-ASNPQKKIDALTQV------ELLPHFTEVLSSSMPKKMPTKGDYIARRQrkeDIWKPHETMLVDDSIDQITSVW 153
                  799***********....55554.....666777899999*******8877777777.66667777777553......345777777777676666655544444444778***************999988 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0016       3.4       2      25 ..      37      60 ..      36      70 .. 0.84
   2 ?    4.6   0.0    0.0026       5.4     111     144 ..      79     112 ..      69     148 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0016
    TIGR02253  2 ikavfFDlddTLidtsklaekalr 25
                 +k ++FD d TL + ++ ++   +
  MMETSP1174-20130828|14209_1 37 VKCILFDYDSTLNPGQGNNSLTTE 60
                 89**********999888776655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0026
    TIGR02253 111 yrlgliTdgltekqweklerlgvrdfFdavivse 144
                  +++ ++T ++++k++  l ++++ + F +v+ s+
  MMETSP1174-20130828|14209_1  79 LQIFVLTASNPQKKIDALTQVELLPHFTEVLSSS 112
                  567799***********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 727.34
//
Query:       MMETSP1174-20130828|14213_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-21   73.5   0.0    3.4e-21   73.4   0.0    1.0  1  TIGR00020 prfB: peptide chain release factor 2
    7.4e-11   39.4   0.0      8e-11   39.3   0.0    1.0  1  TIGR00019 prfA: peptide chain release factor 1
    0.00075   16.9   0.0    0.00079   16.8   0.0    1.0  1  TIGR03072 release_prfH: putative peptide chain release factor H


Domain annotation for each model (and alignments):
>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   2.5e-24   3.4e-21     180     247 ..       1      70 []       1      70 [] 0.95

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 2.5e-24
    TIGR00020 180 llikgeyayGyLksekGvhrLvrisPfdanarrhtsfasvevlPevddd..idieikeedvridvyrasG 247
                  ++ikge+ yG+L +ekG+hrLvrisPf+++++r+tsfa ve +P++ ++   + ei + ++ + + r+ G
  MMETSP1174-20130828|14213_1   1 MEIKGENVYGLLSGEKGTHRLVRISPFNSQGKRQTSFAGVEPMPVLPEEqlEEYEIPTSEITVTTMRSGG 70 
                  589*******************************************8886789**************987 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   5.8e-14     8e-11     167     233 ..       1      70 []       1      70 [] 0.88

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 5.8e-14
    TIGR00019 167 leikGegvysklkfesGvhRvqRvPvtesqGRvhtsaatvavlPevee...vevkinpkdlridtyrssG 233
                  +eikGe+vy+ l  e G+hR  R+   +sqG+ +ts a+v  +P ++e    e +i  +++ + t+rs+G
  MMETSP1174-20130828|14213_1   1 MEIKGENVYGLLSGEKGTHRLVRISPFNSQGKRQTSFAGVEPMPVLPEeqlEEYEIPTSEITVTTMRSGG 70 
                  589*************************************866655441115699*************98 PP

>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.8e-07   0.00079      57     117 ..       3      70 .]       1      70 [] 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.8e-07
    TIGR03072  57 LeGeaaealaerweGtllwiaespyRkkhrRknWfvgverf.......saeeeaeedeirfetlrasG 117
                  ++Ge+   l +  +Gt+ ++  sp+  +++R+  f gve +        +e e+  +ei + t+r+ G
  MMETSP1174-20130828|14213_1   3 IKGENVYGLLSGEKGTHRLVRISPFNSQGKRQTSFAGVEPMpvlpeeqLEEYEIPTSEITVTTMRSGG 70 
                  68888888999999*************************99887654334556677899999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|14214_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.60
# Mc/sec: 178.19
//
Query:       MMETSP1174-20130828|14218_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 816.49
//
Query:       MMETSP1174-20130828|14216_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 1467.28
//
Query:       MMETSP1174-20130828|14221_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|14225_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1216.44
//
Query:       MMETSP1174-20130828|14230_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 194.68
//
Query:       MMETSP1174-20130828|14231_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.45
# Mc/sec: 178.92
//
Query:       MMETSP1174-20130828|14229_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 715.52
//
Query:       MMETSP1174-20130828|14228_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1385.89
//
Query:       MMETSP1174-20130828|14236_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|14237_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|14240_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 643.45
//
Query:       MMETSP1174-20130828|14243_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|14241_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   14.7   2.2      0.018   13.2   0.5    2.1  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.5   4.5e-06     0.018      61      97 ..      73     109 ..      31     113 .. 0.91
   2 ?    0.6   0.0     0.033   1.4e+02      56      74 ..     186     204 ..     169     213 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-06
    TIGR03495  61 eaqaqLrqqlaqaeallaqrekrierLlreneelRrW 97 
                     ++L q+++ ++a+  q + ++++L + ne l+rW
  MMETSP1174-20130828|14241_1  73 YSMRALSQAKSTTDAAKVQLRLTLKELTEANESLKRW 109
                  55689******************************** PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.033
    TIGR03495  56 akrneeaqaqLrqqlaqae 74 
                  a++n++ + qL++q ++  
  MMETSP1174-20130828|14241_1 186 ARANRSRKDQLQEQEQSSG 204
                  4444455555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 815.62
//
Query:       MMETSP1174-20130828|14246_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|14245_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|14242_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-94  313.6   0.0    9.3e-94  312.3   0.0    1.6  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.6e-12   44.3   0.0    7.5e-12   43.3   0.0    1.5  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.2e-09   35.1   0.0    3.3e-09   34.6   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.9e-09   34.4   0.0    4.6e-09   33.7   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.7e-07   28.8   0.0    5.4e-07   27.2   0.0    1.7  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.4e-07   26.9   0.0    4.4e-07   26.5   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.7e-05   22.2   0.0    2.6e-05   21.6   0.0    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00084   16.3   0.0     0.0012   15.8   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
  ------ inclusion threshold ------
      0.028   11.6   0.0      0.043   11.0   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.3   0.0     2e-96   9.3e-94       3     313 ..      57     393 ..      55     395 .. 0.95

  Alignments for each domain:
  == domain 1    score: 312.3 bits;  conditional E-value: 2e-96
    TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfre..sgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelag.kvpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgkrq..........................esfeqelseevsddekakklwelseklvg 313
                  k+  ++tg+ssglg  +a+al+ +g++hv+ a rdl+k e +a+   ++ d++t +k dl s+ svr f e+++e  sg+++d +vcnaavy p l+  ++s dg+e  + +n l hfl+  ll+  ++ s   d+r+i +gsvt+n ++++g  v + adl dl+gl+ag k++ i+midg +f++ak ykdsklc m+ ++ lh +yh +t i+f+s+ypgc+a+++lfre+ p fr+ fp f k+it+g+v eeeag+rl qv  dp+  ksgvywsw+                             + fe++ s++v ++eka++l++ s  + g
  MMETSP1174-20130828|14242_1  57 KKLCVVTGTSSGLGRSTARALLRTGEYHVIGAVRDLDKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEELNEfrSGKAVDRVVCNAAVYQPSLDFAKWSEDGHEQQMQANFLSHFLMVSLLMPYMQGS--VDPRVITVGSVTGNDNTVGGgGVYPVADLKDLDGLKAGAKNP-ISMIDGYNFNGAKGYKDSKLCLMMLANILHDKYHRQTNIAFSSIYPGCIAESPLFREKRPWFRKYFPVFMKFITGGFVGEEEAGQRLFQVCHDPRCVKSGVYWSWNGGPregrgaeaiekggqiagaggagggwdSIFENDQSDKVLNTEKAQRLFKYSTEITG 393
                  67789*****************************************************************99875339************************************************99876..589**************97527999*****************.9********************************************************************************************************9765568899999999999999999999977899999************9999988776 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.7e-14   7.5e-12       2     140 ..      61     202 ..      60     210 .. 0.87
   2 ?   -3.2   0.0       2.7   1.2e+03     144     182 ..     240     279 ..     230     281 .. 0.71

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.7e-14
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveevee..elgeidilvnnAGitrDkl.llrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgll 140
                  +vtG+s g+G+++a++l ++g   vi  +++ +k+e++ae  + +  + + +k+d+ + ++v++++ee++e  + + +d +v+nA + + +l + + +e+ +++ ++ n  + f ++   +  m+ +   r+i+++sv g  
  MMETSP1174-20130828|14242_1  61 VVTGTSSGLGRSTARALLRTGEYHVIGAVRDLDKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEELNEfrSGKAVDRVVCNAAVYQPSLdFAKWSEDGHEQQMQANFLSHFLMVSLLMPYMQGSVDPRVITVGSVTGND 202
                  8********************988888787777766665555556667889*****************998324468************998577999999*************************************9965 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.7
    TIGR01830 144 gqanYaasKaGligltkslakEl.asrnitvnavaPGfie 182
                  g   Y  sK  l+ l+  l   +  + ni + ++ PG i+
  MMETSP1174-20130828|14242_1 240 GAKGYKDSKLCLMMLANILHDKYhRQTNIAFSSIYPGCIA 279
                  5556778888888888877654415679999999999885 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   7.3e-12   3.3e-09       1     146 [.      58     206 ..      58     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 7.3e-12
    TIGR01829   1 rvalvtGglgGiGtaickrlakdG.ykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea.elG.pvdvlvnnaGitrdav.fkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                  ++ +vtG++ G+G++ +++l + G y+v+ +v  + ++ +++++ +e++ ++++ +k d+ sf + ++  +++++   G  vd +v na + + ++ f+k +++  e+ +++n+ s f +   ++  m+     r+i + sv G    +G
  MMETSP1174-20130828|14242_1  58 KLCVVTGTSSGLGRSTARALLRTGeYHVIGAV-RDLDKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEELNEfRSGkAVDRVVCNAAVYQPSLdFAKWSEDGHEQQMQANFLSHFLMVSLLMPYMQGSVDPRVITVGSVTGNDNTVG 206
                  5689*****************99945566555.599999*********************************9873455369*99999999887655***********************************************887766 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0     1e-11   4.6e-09       2     141 ..      58     201 ..      57     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1e-11
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaa..efgsldiLvnnAGi.qhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                  k  +vtG++sG+g+  a++l + G   v+  ++  +++ea+a+  e +  + + +k d+ + ++++d  e++++  +  ++d +v nA + q      ++ ++ +e+ ++ n  s f ++   +p m+ +   r+i ++sv g 
  MMETSP1174-20130828|14242_1  58 KLCVVTGTSSGLGRSTARALLRTGEYHVIGAVRdLDKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEELNEfrSGKAVDRVVCNAAVyQPSLDFAKWSEDGHEQQMQANFLSHFLMVSLLMPYMQGSVDPRVITVGSVTGN 201
                  7789********************98888888746777777777778888999****************998762134567888988887577889999******************************************985 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.2e-09   5.4e-07       6     123 ..      58     181 ..      55     205 .. 0.81
   2 ?   -2.0   0.0      0.97   4.4e+02     152     187 ..     243     279 ..     235     281 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.2e-09
    TIGR01832   6 kvalvtGantGlGqgiavglaeaGa.divgvg.iselsetqekvealG.rkflslkadladeeaakalvdeaveeag..kidilvnnaGiirre.davefsekdwddvlnvnlkavfllsqava 123
                  k  +vtG+++GlG++ a +l ++G  +++g+    +  e+ ++ve+    +f+ +k dl + ++++ + +e  e      +d +v na + + + d  ++se   ++ ++ n+ + fl+   + 
  MMETSP1174-20130828|14242_1  58 KLCVVTGTSSGLGRSTARALLRTGEyHVIGAVrDLDKMEAVAEVEEFNmDNFTPMKCDLLSFASVRDFCEELNEFRSgkAVDRVVCNAAVYQPSlDFAKWSEDGHEQQMQANFLSHFLMVSLLM 181
                  7889*******************9636777662567889999998865279******************99887543348**********9865488999*****************9987654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.97
    TIGR01832 152 sytasksavaGltkllanewa.kkginvnaiaPGyle 187
                   y  sk  ++ l+ +l  ++  +++i   +i PG ++
  MMETSP1174-20130828|14242_1 243 GYKDSKLCLMMLANILHDKYHrQTNIAFSSIYPGCIA 279
                  688999999******9998862679999*****9875 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.7e-10   4.4e-07     399     531 ..      42     176 ..       6     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9.7e-10
    TIGR02632 399 eeaklrrmPkekelarrvalvtGgasGiGrevarrlvdeGa.hvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG..vdivvnnaGiav.skpleeteleeWdlnldilatGyflv 531
                  e    +    +k   +++ +vtG++sG+Gr +ar l   G  hv+ a  d +++eava+  v++f +d+   +k d+ +  +v+   +e      G  vd vv na +   s ++ + +++  + +++ +   +fl+
  MMETSP1174-20130828|14242_1  42 ESLSNQFSASQKFGDKKLCVVTGTSSGLGRSTARALLRTGEyHVIGAVRDLDKMEAVAE--VEEFNMDNFTPMKCDLLSFASVRDFCEELNEFRSGkaVDRVVCNAAVYQpSLDFAKWSEDGHEQQMQANFLSHFLM 176
                  4444445555555568999********************96478888899999999987..468********************999998755444459*****999875367888888888888888888888886 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.6e-08   2.6e-05       2     140 ..      61     201 ..      60     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.6e-08
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevlea..diaehgayygvvlnagiarda.afpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgv 140
                  +vtg+s g+gr+ a  l   g    +   +d  + e++++  + +  n   +k d+    +vr+  e+  +  +  a   vv na + + +  f   se+  +  +++n+ + + ++  l+mp ++     r+it+ sv+g 
  MMETSP1174-20130828|14242_1  61 VVTGTSSGLGRSTARALLRTGEYHVIGAVRDLDKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEElnEFRSGKAVDRVVCNAAVYQPSlDFAKWSEDGHEQQMQANFLSHFLMV-SLLMPYMQGSVDPRVITVGSVTGN 201
                  79***************99997766777777666666666666677788889999999999999988533677778999********886537999*************99998776.689******************984 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.7e-06    0.0012       4     111 ..      60     164 ..      58     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.7e-06
    TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaae 111
                   +vtG++  +Grs a +l ++G   v+   r   +  + +ae+++   +    +k+dl   as+ + cee+ +  fr+    d +v na+ + p+  + + +e+g  +
  MMETSP1174-20130828|14242_1  60 CVVTGTSSGLGRSTARALLRTGEYHVIGAVRDL-DKMEAVAEVEEFNMDNFTPMKCDLLSFASVRDFCEELNE--FRSGKAVDRVVCNAAVYQPSLDFAKWSEDGHEQ 164
                  69*****************99955555554443.333445555555566777899***************965..9999999************98888888887544 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.5e-05     0.043       2     137 ..      59     185 ..      58     199 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.5e-05
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklk 137
                  l++vtG s G+Gr+ a+ l +   +    ++   R+++ +  + ae+e   +      +  dl + + v d+ + l+e    +  +r++   na ++++ s  + + s+  + +++ ++n  s   + s+l+  ++
  MMETSP1174-20130828|14242_1  59 LCVVTGTSSGLGRSTARALLR---TGEYHVIGAVRDLDKME-AVAEVEE-FNMDNFTPMKCDLLSFASVRDFCEELNEFRSGKAVDRVVC--NA-AVYQPSLDFAKWSEDGH-EQQMQANFLSHFLMVSLLMPYMQ 185
                  79***************9998...44455666678888775.4567775.6777788888999999999999999999999999999764..33.57777777776665444.44556677777666676666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1635.38
//
Query:       MMETSP1174-20130828|14249_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|14248_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 802.09
//
Query:       MMETSP1174-20130828|14251_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-22   75.9   0.3    8.2e-22   75.9   0.2    2.0  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.2e-17   59.3   2.1    6.2e-17   59.3   1.5    2.7  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.7e-15   54.3   0.2    2.6e-15   53.7   0.2    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0059   14.6   0.1      0.047   11.6   0.1    2.6  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.2       0.4   4.1e+02      58     111 ..     457     511 ..     441     519 .. 0.68
   2 !   75.9   0.2     8e-25   8.2e-22       2      66 ..     533     596 ..     532     606 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.4
    TIGR02349  58 kraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr.rs 111
                   +aq++++g ++++++   ++   + + +    +  + f++ f+++++s+++ rs
  MMETSP1174-20130828|14251_1 457 HKAQFNNYGYKKFNEQRPPDSPPKARNGRDPSASARHSFKQNFKRDTSSRHQdRS 511
                  6789999999999997666544444444455566778888888887765544333 PP

  == domain 2    score: 75.9 bits;  conditional E-value: 8e-25
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfg 66 
                  +Y iLgv+ +A+  eikkAY kla kyHPD+n+ ++ a e fk i++A+evLsd   r++YD+  
  MMETSP1174-20130828|14251_1 533 HYTILGVKETATVTEIKKAYLKLALKYHPDKNS-DPSATEMFKTIKDAKEVLSDAVTRKSYDETV 596
                  6********************************.****************************975 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.3    0.0026       2.7     125     189 ..       5      79 ..       2     111 .. 0.70
   2 ?   -2.2   0.0      0.25   2.6e+02     128     160 ..     156     191 ..     123     219 .. 0.73
   3 !   59.3   1.5   6.1e-20   6.2e-17     122     276 ..     312     504 ..     292     520 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0026
    TIGR00990 125 kyaaklk...ekGnkayrnkdfdkaielyskalll.....kedPvyy..snraacynaladlekvvedttaalel 189
                  +ya+++    e+  +ay++ +++ ++e+y+ka  l      +d  +   snr+a +  +  ++   +d  + + l
  MMETSP1174-20130828|14251_1   5 QYAVEVEtamEAARRAYGQGQYELSVEYYTKAADLsfganEDDAQFRaiSNRSAAFMMMYRFKDAAADCNQVISL 79 
                  666665422277889****************98763333234555534489999999988888888887777665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.25
    TIGR00990 128 aklkekGnkayrnk...dfdkaielyskalllkedP 160
                   klk++ +kay  +   ++++ai     al++  d 
  MMETSP1174-20130828|14251_1 156 YKLKNAMEKAYTAQtsgEYEDAITAAGVALEIAVDS 191
                  478888888886442237999998888888877765 PP

  == domain 3    score: 59.3 bits;  conditional E-value: 6.1e-20
    TIGR00990 122 erkkyaaklkekGnkayrnkdfdkaielyskalllked.....Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakeil.................................etkpeklPsvtfvanylqsfraklr 276
                  +r + +   ke G+ a+r+ ++  ai lys+al + +d      v  +nraa + al ++   v d t al+l+p y ka +rra a  q   ya a+ld+ +     +  +   +  ++         ka e+l                                 + ++ + Ps+    ++ q f+ +  
  MMETSP1174-20130828|14251_1 312 QRMDKSRTAKESGDAAFRRAKYHAAIALYSQALDVDKDadafnAVLLCNRAAAHMALYKFIAAVSDCTIALRLQPSYLKARLRRARALVQNKDYAAAILDFNTYLREAETVEGTDKGSLQEVRVELESVKASERLekdkrreaaahkaqfnnygykkfneqrppdsppKARNGRDPSASARHSFKQNFKRDTS 504
                  566667778**************************998444445999******************************************************87654444433333333333333334445555554445577777777778888888888888877777777777888888888887776655 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.2   2.6e-18   2.6e-15       4      65 ..     533     594 ..     531     596 .. 0.97

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 2.6e-18
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65 
                  +y +Lg++  a   eikka+ kLa kyhPD+n ++ a ++f+ i +a++vLs+   r+ yD 
  MMETSP1174-20130828|14251_1 533 HYTILGVKETATVTEIKKAYLKLALKYHPDKNSDPSATEMFKTIKDAKEVLSDAVTRKSYDE 594
                  699*********************************************************95 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   4.6e-05     0.047       8      56 ..     548     592 ..     544     599 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.6e-05
    TIGR00714   8 LrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                  ++k y+kl  +yHPD  k+      a +   ++ +A + L d++ R  y
  MMETSP1174-20130828|14251_1 548 IKKAYLKLALKYHPD--KNSD--PSATEMFKTIKDAKEVLSDAVTRKSY 592
                  6899***********..4333..467888899************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.50
# Mc/sec: 1607.63
//
Query:       MMETSP1174-20130828|14253_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|14254_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-07   26.6   0.1    3.6e-07   26.1   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    0.00018   17.7   0.0    0.00018   17.7   0.0    1.1  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
  ------ inclusion threshold ------
      0.023   10.7   0.0      0.031   10.3   0.0    1.1  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
      0.024   10.9   0.0      0.049    9.9   0.0    1.5  2  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.5e-10   3.6e-07      30     170 ..       2     147 ..       1     167 [. 0.71

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.5e-10
    TIGR04121  30 sglliapTGaGKTlavflpslielaakekpk..kglkvlyitPLkaLakdieraleapieelglei.rvelrtGDtsss...erarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrr 170
                  + l++a TG+GKTla ++p +  ++++e p   + + ++ ++P + La++++    +  +  +  i    l tG  + +   e     k+   +L+ Tp  l  ll + d  + +++l+++++DE   Ll+    + l+  L+rL +
  MMETSP1174-20130828|14254_1   2 DVLVEACTGSGKTLAFVIPLIDMILRREYPLkaRQVGAIVVSPTRELARQTHAVCAHFSASSDGLIpPPLLLTGGVPVAtdlEAVAMAKAGVPVLIATPGRLDDLLGRYDVFD-LRELESLILDEADTLLALGFSTTLSSILSRLPK 147
                  679************99987777775555444488999************99877765554443331334566665544111334455666779************9999876.699***********9997666666666666643 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.7e-07   0.00018      53     105 ..       2      60 ..       1     152 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.7e-07
    TIGR03817  53 hvvvatgtasGkslayllPvlsalaed......pratalylaPtkalaadqlravkele 105
                  +v v + t sGk+la+ +P+++ + +       ++  a+ ++Pt+ la+   +++ +++
  MMETSP1174-20130828|14254_1   2 DVLVEACTGSGKTLAFVIPLIDMILRReyplkaRQVGAIVVSPTRELARQTHAVCAHFS 60 
                  688999****************9998867766668999**********98888877665 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     3e-05     0.031     266     286 ..       2      22 ..       1      33 [. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3e-05
    TIGR01407 266 kslIeAatGtGKtlgYLLpal 286
                  ++l+eA tG+GKtl++ +p+ 
  MMETSP1174-20130828|14254_1   2 DVLVEACTGSGKTLAFVIPLI 22 
                  78***************9975 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   4.8e-05     0.049      19      66 ..       3      56 ..       1      68 [. 0.66
   2 ?   -2.4   0.0      0.26   2.6e+02     244     271 ..     115     143 ..     109     161 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.8e-05
    TIGR03117 19 alveaatGvGktlamllaaeall..kerpd..akv.a.iavPtlalldqlleey 66
                  lvea tG Gktla+++    ++  +e p    +v a +  Pt  l +q+    
  MMETSP1174-20130828|14254_1  3 VLVEACTGSGKTLAFVIPLIDMIlrREYPLkaRQVgAiVVSPTRELARQTHAVC 56
                 58*************998776652244443323333313459988888887655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.26
    TIGR03117 244 lpqldlLvvDeahlled.alasvlssals 271
                  l +l+ L+ Dea +l +  +++ lss ls
  MMETSP1174-20130828|14254_1 115 LRELESLILDEADTLLAlGFSTTLSSILS 143
                  55778899999987644267777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 482.05
//
Query:       MMETSP1174-20130828|14255_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   24.1   0.4    1.2e-05   23.3   0.3    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
    9.2e-05   19.8   0.0     0.0001   19.7   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
  ------ inclusion threshold ------
      0.015   11.5   0.0       0.02   11.0   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.3   8.5e-09   1.2e-05       6      47 ..      74     117 ..      72     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.5e-09
    TIGR00714   6 kaLrkryrklQkqyHPD..vsksaqeqaaalqqStelNqAykTL 47 
                  + L++ryr l ++yHPD        e + ++q+   lN+Ay+TL
  MMETSP1174-20130828|14255_1  74 QELQRRYRSLAARYHPDqqRRLFGEEAQSGSQEYQHLNEAYSTL 117
                  789**************6423334566679999**********9 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.4e-08    0.0001      14      55 ..      73     119 ..      65     167 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.4e-08
    TIGR02349  14 eeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsd 55 
                  ++e+++ Yr+la +yHPD+++       +  ++ +++ neAy  L+ 
  MMETSP1174-20130828|14255_1  73 RQELQRRYRSLAARYHPDQQRRlfgeeAQSGSQEYQHLNEAYSTLTR 119
                  5899***************987665545556789********99975 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05      0.02      17      54 ..      74     117 ..      66     120 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.5e-05
    TIGR03835  17 qeikkafrkLakkyhPDrnka......adaakifaeineandvL 54 
                  qe+++ +r La +yhPD+ +           + ++ +nea+  L
  MMETSP1174-20130828|14255_1  74 QELQRRYRSLAARYHPDQQRRlfgeeaQSGSQEYQHLNEAYSTL 117
                  899**************987444301133456788899999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 750.69
//
Query:       MMETSP1174-20130828|14258_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|14259_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|14257_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.89
# Mc/sec: 860.15
//
Query:       MMETSP1174-20130828|14262_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|14265_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.1  41.0      0.046   10.8  28.4    1.1  1  TIGR02794 tolA_full: protein TolA
       0.43    6.0  22.5       0.52    5.8  15.6    1.1  1  TIGR02680 TIGR02680: TIGR02680 family protein
        1.8    5.1   9.6        2.4    4.6   6.7    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
        6.4    3.7  17.1        9.1    3.2  11.8    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
        8.5    2.2  11.9        9.5    2.0   8.2    1.0  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  28.4   5.6e-05     0.046      77     219 ..      12     146 ..       4     156 .. 0.53

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.6e-05
    TIGR02794  77 kkleqqaeeakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKa..ekkakee.......AakkaEeeakakaa...aeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAe 219
                  k +e  +++++ + ++e++rq++   ++a ++     ++e a+k     +k a e+ a+ ++E+  kae +aKa  e++a e+        ++kaE+ea  k        k+k+E      ka+a a ++++ + a+      k K+++ A  KA+
  MMETSP1174-20130828|14265_1  12 KSQEDSKRTMRRRTKEEAERQRKN--EEALRQGLLElEEENARK-----QKNAVER-ARTEEER-VKAEHNAKAatERQAREDsafmlrlIRQKAEDEAFMKRLlkaSSSKRKKE------KADATA-RDAKSTSARY-----KSKNNERASSKAQ 146
                  344555556666666666665555..444444445546666666.....4555444.4656666.33333345557888888888888866888888887776643244444444......333333.3444444333.....2333322333332 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  15.6   0.00063      0.52     291     416 ..      14     147 ..       4     180 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00063
    TIGR02680 291 elekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesr....eeeerrrldeeaarleeaeeel....raareelareAeraglseahtaeplaalaaqe 416
                  +++  r  +r+++++ e+ ++++ealr+ l +L+e++a ++ +  erar e e+ +++ ++++ + ++a+++    ++  r+++++ea   + ++ +     +++++ +ar+A+        ++++ a  +aqe
  MMETSP1174-20130828|14265_1  14 QEDSKRTMRRRTKEEAERQRKNEEALRQGLLELEEENARKQKNAVERARTEEERVKAEHNAKAATERQAREDsafmLRLIRQKAEDEAFMKRLLKASSskrkKEKADATARDAKSTSARYKSKNNERASSKAQE 147
                  34445556666666666666677777777777777777777777776666666555544444444444433311113444555555543222222211000022223333333333333333333333333333 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.7    0.0029       2.4     207     333 ..      30     150 ..      18     162 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0029
    TIGR02927 207 edepkeeekpekseakseekpeaaepkaekkeepkpepkaeekapaakaatektaadsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeakeaaaaeaaaaapaapaaakkap 333
                  e + k+ee+  +   + e   e a+++ + +e+ + e ++ + + +akaate++a ++s+++  l+r+ a+++      +k +    +  k d  a+a++a+ + +   ++    + a++ a +k p
  MMETSP1174-20130828|14265_1  30 ERQRKNEEALRQGLLELE--EENARKQKNAVERARTEEERVKAEHNAKAATERQAREDSAFMLRLIRQKAEDEAFMKRLLKASSSKRKKEKAD--ATARDAKSTSA-RYKS-KNNERASSKAQEKMP 150
                  333344444433333333..3344444445555555566666678899**************************9999999876554444444..44444443322.2233.333333333555555 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  11.8     0.011       9.1      67     174 ..      39     145 ..      10     159 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.011
    TIGR01347  67 sgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavek....tkktgrvtkedivkkeekkasaakeaaakaakaaenaatrs 174
                   ++ l elee++a +++++ +++ ++ee+++a+++++++++ ++++ s  + +l+++++ d++ +++    ++++ ++ k+d++++ +k +sa+ ++++++ +     +++ 
  MMETSP1174-20130828|14265_1  39 LRQGLLELEEENARKQKNAVERARTEEERVKAEHNAKAATERQAREDSAFMLRLIRQKAEDEAFMKRllkaSSSKRKKEKADATARDAKSTSARYKSKNNERA-----SSKA 145
                  4677888998877776666665555555555444444444444455555566666666666666655100033444444444444444433333333322222.....2222 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   8.2     0.012       9.5     753     852 ..       8     107 ..       1     155 [. 0.62

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.012
    TIGR03683 753 aeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvvvlvsekegkvkvvvssge 852
                  + i+k ++++  ++ +r+ ee + qrk+ e l++ l el++e++ ++++ v+ ++   e+v+a++++ +++ ++ +e+++ +   ++++ + +  +++  
  MMETSP1174-20130828|14265_1   8 SWIIKSQEDSKRTMRRRTKEEAERQRKNEEALRQGLLELEEENARKQKNAVERARTEEERVKAEHNAKAATERQAREDSAFMLRLIRQKAEDEAFMKRLL 107
                  4456666666666667788899999999***************************999999988888777777776666555444444333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       429  (0.104583); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.59
# Mc/sec: 532.43
//
Query:       MMETSP1174-20130828|14266_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 512.87
//
Query:       MMETSP1174-20130828|14261_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1658.86
//
Query:       MMETSP1174-20130828|14268_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|14270_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 632.16
//
Query:       MMETSP1174-20130828|14277_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|14278_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26    9.5   3.8       0.61    8.3   2.6    1.6  1  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.6   0.00015      0.61      27      70 ..     173     217 ..     166     220 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00015
    TIGR02976  27 rskrktaaslst.ddlalLeelsekakrleeRidtLEriLdeesp 70 
                  r+k+++aa+ s  + + lL+  s++ + l eR+++LEr L++ ++
  MMETSP1174-20130828|14278_1 173 RRKNREAADRSRcKRQTLLAAQSDQNRELTERVQQLERDLAASQA 217
                  2333333333331455667777788888**********9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1601.24
//
Query:       MMETSP1174-20130828|14280_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 772.62
//
Query:       MMETSP1174-20130828|14282_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.78
# Mc/sec: 729.32
//
Query:       MMETSP1174-20130828|14284_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.71
# Mc/sec: 654.37
//
Query:       MMETSP1174-20130828|14285_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-22   76.6   1.3    5.6e-22   76.3   0.9    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
      1e-17   62.0   5.1    1.3e-17   61.7   3.5    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    3.7e-13   46.7   2.3    4.2e-13   46.5   1.6    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    5.5e-12   43.4   0.5    6.4e-12   43.1   0.4    1.1  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.9e-05   21.2   0.1    2.4e-05   20.8   0.0    1.2  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
      6e-05   18.7   0.0    6.7e-05   18.6   0.0    1.1  1  TIGR02712 urea_carbox: urea carboxylase
    0.00035   18.9   0.3     0.0009   17.6   0.2    1.6  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
      0.004   12.5   0.2      0.005   12.2   0.1    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
  ------ inclusion threshold ------
      0.014   12.6   0.4      0.022   12.0   0.3    1.3  1  TIGR03309 matur_yqeB: selenium-dependent molybdenum hydroxylase system protein, YqeB family
      0.015   12.1   0.1      0.029   11.1   0.1    1.5  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.9   1.4e-24   5.6e-22       2     105 ..      48     149 ..      47     182 .. 0.76

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 1.4e-24
    TIGR01347   2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakaekake 105
                   i vP++++s+te+t+ +wek+vGd+v+ d++i+ +etDkvs++v + + Gv+ e  +k +d ve+g++l +++ +s+ a a +  s +++ e++ a+ae+   
  MMETSP1174-20130828|14285_1  48 VISVPDMGDSITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRIDVQSSDAMADETVSPSKPTETMSATAEE--P 149
                  589**********************************************************************9655444444444444444433333332..2 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   3.5   3.1e-20   1.3e-17     129     233 ..      49     153 ..      44     191 .. 0.62

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 3.1e-20
    TIGR02927 129 vempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpe.kseakseekpeaaepk 233
                  + +p++G+s+teGt+ +w k vGd v++d+ +  + tdkv  ++ +   G+++e  a+ dd vevG  l +i    ++++   e  +p+ ++e+ s+ + e+ +  
  MMETSP1174-20130828|14285_1  49 ISVPDMGDSITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRIDV-QSSDAMADETVSPSkPTETMSATAEEPGHSS 153
                  56777777777777777777777777777777777777777777777777777777777777777777777764.2222222222233312222233333333333 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   1.6     1e-15   4.2e-13       3     108 ..      49     154 ..      15     199 .. 0.63

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1e-15
    TIGR01348   3 ikvPdiGd.ieevevievlvkvGdkveaeqslitlesdkasmevPsskaGivkeikvkvGdtlkeGavilllevadgaaddaeekaeaasaaagaadaakdveaeqa 108
                  i vPd+Gd i e++++    +vGd+v+ +  +  +e+dk s++v +++ G++ e  +k  d++++G+ +l ++v++++a  a+e+ + + ++++ +++a++   +++
  MMETSP1174-20130828|14285_1  49 ISVPDMGDsITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRIDVQSSDA-MADETVSPSKPTETMSATAEEPGHSSS 154
                  6677777777777777777777777777777777777777777777777777777777777777777777777775444.444444444444444444443222222 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.4   1.6e-14   6.4e-12       2     112 ..      49     151 ..      48     201 .. 0.66

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.6e-14
    TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkl.iavlveekedvedavknyklessasapkpkekaeqsaeesae 112
                  i++P +  +++eG+l  w+k+ GD v+  d+ia ietDk  +dv ++  g++     ++   +v+v+   + + v+ +++++d  +      + s +kp+e+ + +aee  +
  MMETSP1174-20130828|14285_1  49 ISVPDMGDSITEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADD-NVEVGDAlLRIDVQSSDAMAD--E------TVSPSKPTETMSATAEEPGH 151
                  889***************************************************9887765.6***97514455554444442..2......22222333332222221111 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     6e-08   2.4e-05     524     582 .]      59     117 ..       6     117 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6e-08
    TIGR01108 524 laGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                    G+++  + + Gd v+  +++ v+e+ k+  +++a++ G++ e + k+ d+v vg+ l
  MMETSP1174-20130828|14285_1  59 TEGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDAL 117
                  359999999**********************************************9976 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-07   6.7e-05    1140    1200 ..      60     120 ..      20     121 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.6e-07
    TIGR02712 1140 agrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                   +g+l     +vgd+v+ +d + ++e+ k+ + v+a++ G++++  +k+ d+ve Gdal+ +
  MMETSP1174-20130828|14285_1   60 EGTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRI 120 
                   56777777889**********************************************9876 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.2e-06    0.0009     103     155 ..      69     121 ..      68     122 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.2e-06
    TIGR00531 103 evGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155
                  +vGd+v+ +d+++++e  k+  ++ a  +g ++e   +  + ve g+ L+ i+
  MMETSP1174-20130828|14285_1  69 HVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRID 121
                  59***********************************************9985 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   1.2e-05     0.005    1083    1142 ..      61     120 ..      51     121 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.2e-05
    TIGR01235 1083 GvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvl 1142
                   G+++    ++G+ v+  d ++v+e+ k+ + v+a + G++ e + k+ ++++  d ll +
  MMETSP1174-20130828|14285_1   61 GTLLSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAKADDNVEVGDALLRI 120 
                   778888899**********************************************99876 PP

>> TIGR03309  matur_yqeB: selenium-dependent molybdenum hydroxylase system protein, YqeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   5.4e-05     0.022     175     227 ..      64     117 ..      48     134 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.4e-05
    TIGR03309 175 ltslkeiGdlvkkGdvvalvdekevkaeldGllrGlireglt.vteGlkigdvd 227
                  l+++k++Gd+v+  d++a++++ +v+ ++  +  G+i e  +   + + +gd  
  MMETSP1174-20130828|14285_1  64 LSWEKHVGDSVNIDDIIAVIETDKVSVDVRATHPGVIMEAFAkADDNVEVGDAL 117
                  467899*****************************9998764144556666655 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.25     1e+02      34      63 ..      60      89 ..      59      91 .. 0.87
   2 ?   11.1   0.1   7.1e-05     0.029      26      68 ..      89     131 ..      67     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.25
    TIGR01730 34 aGkvtkisvkeGqkVkkGqlLakldddelq 63
                 +G + +     G+ V+  +++a +++d+++
  MMETSP1174-20130828|14285_1 60 EGTLLSWEKHVGDSVNIDDIIAVIETDKVS 89
                 58888899999**************99876 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 7.1e-05
    TIGR01730  26 eaeiaaevaGkvtkisvkeGqkVkkGqlLakldddelqlalda 68 
                  +++++a+ +G++ +   k+ + V  G+ L+++d ++  + +d+
  MMETSP1174-20130828|14285_1  89 SVDVRATHPGVIMEAFAKADDNVEVGDALLRIDVQSSDAMADE 131
                  799******************************9988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.93
# Mc/sec: 330.68
//
Query:       MMETSP1174-20130828|14286_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-13   46.4   0.0    1.3e-12   45.6   0.0    1.3  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    5.7e-10   35.7   0.0    7.1e-10   35.4   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
      1e-09   35.1   0.0    1.4e-09   34.6   0.0    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    2.7e-08   30.4   0.0    3.7e-08   30.0   0.0    1.1  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    1.2e-06   25.9   0.0    1.9e-06   25.2   0.0    1.2  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    2.7e-05   21.6   0.0      5e-05   20.8   0.0    1.4  1  TIGR01929 menB: naphthoate synthase
    8.1e-05   19.9   0.0    0.00015   19.0   0.0    1.3  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
     0.0028   14.6   0.0     0.0041   14.1   0.0    1.2  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.5e-15   1.3e-12       8     199 ..      43     234 ..      40     276 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2.5e-15
    TIGR02280   8 gvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllp...rlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqp 199
                  gv  ++l rp++ ns++ ++ ++l   l   e +  v a++l G    fc G dl+ ++ ++++a dl  +++  y     r+a+  kp+++ ++G   G G  la  +   + +++++f     ++Gl+pd    ++l     + G+   +  +l g  l+ +   + Gl   +v+ + ++d+v +  + l ++ 
  MMETSP1174-20130828|14286_1  43 GVRVVALQRPEEANSLDVDLARKLESRLALWEENViVNAVILRGKKDVFCGGVDLDWLSEHRDQAEDLYAALNDLY----SRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGLVPDGPLIHMLGasdAVTGVPYGRLASLCGATLEGHDLCSMGLASYMVAHNGIMDDVAEYLTGLDEKS 234
                  688899**************************99989*******************************99887766....699*************************************************9999988622246677777777899999999999999999999988888877766665555544 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.4e-12   7.1e-10       2     159 ..      23     174 ..      22     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.4e-12
    TIGR02441   2 llstsaallarthlsvevkgdvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgt 159
                  l st a++ ++++ ++    +v vv ++ p+   n+l+ +l  ++++ l  l+ ++ +  av++ +k + f  G d+d l      ++++ l    + l++++ + +kp+++ + G   GGGl la    + + t++  t +++pe  +Gl+p +   
  MMETSP1174-20130828|14286_1  23 LQSTVASVETTEKYTIGDLPGVRVVALQRPE-EANSLDVDLARKLESRL-ALWEENVIVNAVILRGKKDVFCGGVDLDWLSEH--RDQAEDLYAALNDLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDE--TRFTVPEPNFGLVPDGPLI 174
                  556666666677777788889*********8.58***********9998.59999************************9865..567889999999*******************************999998865..7789999999**9987655 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.7e-12   1.4e-09      19     197 ..      52     228 ..      39     250 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 2.7e-12
    TIGR02440  19 pgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlp...rlvgvskaldmiltgkqlrakqalklglvddvvpks.illdvavela 197
                  p e+ n+l  ++a ++++ l+   e++ +   v++ gk+d f  g d+  l+  +  d+a+ l +  ++l+++++ +  ++++ + g   gggl   la  s  c   d t++ +pe ++gl+p +     l     + gv       l g  l  ++   +gl   +v ++ i+ dva+ l+
  MMETSP1174-20130828|14286_1  52 P-EEANSLDVDLARKLESRLALW-EENVIVNAVILRGKKDVFCGGVDLDWLSEHR--DQAEDLYAALNDLYSRVANYRKPLITMLDGNIGGGGLG--LAANSAFCMVTDETRFTVPEPNFGLVPDGPLIHMLGasdAVTGVPYGRLASLCGATLEGHDLCSMGLASYMVAHNgIMDDVAEYLT 228
                  4.557999999999999988755.55667778999****************9876..78999*99************************999986..568899*********************99877766422145677776677799999999999999999998887635556776544 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   7.2e-11   3.7e-08      19     164 ..      46     183 ..      34     227 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 7.2e-11
    TIGR02437  19 elvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsal 164
                   + ++ p+  n ld     +l+  l   +++  +++++l+ +kd+f  G d+ ++l+  + + e+l +     n +++++ +   p +++++G   GGGl +   + f +++++++  +pe  +G++p  G    l  ++Ga +a+
  MMETSP1174-20130828|14286_1  46 VVALQRPEEANSLDVDLARKLESRLALWEENVIVNAVILRGKKDVFCGGVDL-DWLSEHRDQAEDLYAA---LNDLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGLVPD-G---PLIHMLGASDAV 183
                  5667889999*****************************************8.6788888777777765...599****************************************************96.2...244566666665 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.7e-09   1.9e-06      11     214 ..      43     247 ..      35     266 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.7e-09
    TIGR03210  11 gvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsthdgnydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtalla...rvvgekkareiwylc.rrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvd 214
                  gv ++ ++r+e+ n++    + +l   l   + +  + +++l g  d  fc g d      + d    +   +++l s + +  kp+i+ ++g   ggg  l++   ++++++ + +    p+ g v  g    +l     v g    r    lc     +++  +mgl+  +v h+ +  +v  +   + eks    ++ k+++ + 
  MMETSP1174-20130828|14286_1  43 GVRVVALQRPEEANSLDVDLARKLESRLALWEENVIVNAVILRGKKD-VFCGGVDLDWLSEHRDQAEDLYAALNDLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGLVPDGPLIHMLGasdAVTGVPYGRLA-SLCgATLEGHDLCSMGLASYMVAHNGIMDDVAEYLTGLDEKSNVRESL-KKALSLH 247
                  8888999999999999999999999999888888889999**99987.7********999999******************************99999999**************************999887777422246676666655.5662678999*******************************9887665.4455555 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.7e-08     5e-05      13     227 ..      44     257 ..      35     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.7e-08
    TIGR01929  13 iakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsayla...rivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadldGqaGlqel 227
                  +  +a++rp+  n++      +l + l+   e+  +  vil G+ d  fc G d    +++  + e+  + ln  ++   +    kp+i++++G   GGG  l     + + ++++rf   +p+ G    G     l     + G  + r   + +   + ++  +mGl   +v ++ + ++  e+ + + +ks +    lk+al ++ + q+   e+
  MMETSP1174-20130828|14286_1  44 VRVVALQRPEEANSLDVDLARKLESRLALWEENVIVNAVILRGKKD-VFCGGVDLDWLSEHRDQAEDLYAALN--DLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGLVPDGPLIHMLGasdAVTGVPYGRLASLCGATLEGHDLCSMGLASYMVAHNGIMDDVAEYLTGLDEKSNV-RESLKKALSLHSQWQSETDEM 257
                  556899**********************9999999********976.7******9999887777777666666..8899999********************************************98777544444212146788999999999999**********************************9976.567999999988888776666 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.8e-07   0.00015      15     131 ..      48     167 ..      40     180 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.8e-07
    TIGR03189  15 rlarp.kanivdaamiaalraalgealeaaalravlldaegphfsfgasve...ehmpdqcaamlkslhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgv 131
                   l rp  an +d ++   l++ l+   e+  + av+l  +   f  g  ++   eh  dq   + ++l +l  ++ ++  p++  + g+  gggl +aa   + +++ ++++  pe ++g+
  MMETSP1174-20130828|14286_1  48 ALQRPeEANSLDVDLARKLESRLALWEENVIVNAVILRGKKDVFCGGVDLDwlsEH-RDQAEDLYAALNDLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGL 167
                  57888459*************************************99987644255.6999*******************************************************98886 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     8e-06    0.0041      42     172 ..      48     173 ..      39     189 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8e-06
    TIGR03200  42 ildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaigga 172
                  +l+ p + ns   d+ + +   +     +  v+av++ +  d  fc g +    +e+  +  + y      +nd+ s + +  kp i+ ++g   ggg  +   + +++  d ++f    p  g  ++g  
  MMETSP1174-20130828|14286_1  48 ALQRPEEANSLDVDLARKLESRLALWEENVIVNAVILRGKKD-VFCGGVDLDWLSEHRDQAEDLY----AALNDLYSRVANYRKPLITMLDGNIGGGGLGLAANSAFCMVTDETRFTVPEPNFGLVPDGPL 173
                  566777777777777777666555555566677777776655.6898877766666655554444....45799999***************887888777777889******************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.91
# Mc/sec: 596.13
//
Query:       MMETSP1174-20130828|14283_1  [L=1304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.72
# Mc/sec: 2390.47
//
Query:       MMETSP1174-20130828|14287_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1210.53
//
Query:       MMETSP1174-20130828|14289_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.5   1.8      0.038   11.1   1.2    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.038   12.2   8.0      0.016   13.4   3.4    2.0  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2   1.9e-05     0.038      68     184 ..     215     342 ..     206     394 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.9e-05
    TIGR03752  68 lkelrkelaklekeNeklkkenerlk....kreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle......dvaaekesseedlpvglGleeg...dkaqseskdevvwvepsdakat 184
                   ++lr++l++l+++ ++l  + e  k    ++++s+d+ i+qale+ +++l+  +++ +++ + l+++++elq+  e        ++++ ++++ l    G++e+    k++ e++++++ v p+da+++
  MMETSP1174-20130828|14289_1 215 HRQLRSTLNELDEKYQALSGQLEGAKaassSEDSSLDRAIEQALESSRHSLTLVESEHENKLKVLAQRTSELQRLEEsfvfveAEVSGALQNDSALAD--GIREKcriLKETVEENNRLANVPPQDAAES 342
                  577888888888888877766555441111567899***************99999999999999999999985444887754333444444444444..555441113445555999999999998764 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.88   1.8e+03      89     108 ..      78      97 ..      68     100 .. 0.60
   2 ?   13.4   3.4   7.9e-06     0.016      28     109 ..     214     290 ..     207     291 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.88
    TIGR02473  89 keleakrerlleaakelkal 108
                  ++  + r++l+++ +el+al
  MMETSP1174-20130828|14289_1  78 QNFVKLRDALRDKLRELEAL 97 
                  44556666777777776666 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 7.9e-06
    TIGR02473  28 eferleqqLqqlekereeyeqqanekvqsgtsaaelsnlqrfirqldeaieqqqqelaelekeleakrerlleaakelkale 109
                  ++ +l++ L++l++++++++ q      +g++aa+ s+    +r++++a+e+ +++l + e e e+k + l++   el+ le
  MMETSP1174-20130828|14289_1 214 THRQLRSTLNELDEKYQALSGQ-----LEGAKAASSSEDSSLDRAIEQALESSRHSLTLVESEHENKLKVLAQRTSELQRLE 290
                  5788999999999999999999.....6888999999999***************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1156.13
//
Query:       MMETSP1174-20130828|14291_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 596.23
//
Query:       MMETSP1174-20130828|14292_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 248.89
//
Query:       MMETSP1174-20130828|14297_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.59
# Mc/sec: 1020.12
//
Query:       MMETSP1174-20130828|14301_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 378.60
//
Query:       MMETSP1174-20130828|14298_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   71.5   0.0    2.3e-09   35.2   0.0    2.3  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
      6e-15   53.2   0.0    7.2e-06   23.4   0.0    3.3  3  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    8.9e-15   52.7   0.0    6.8e-09   33.4   0.0    2.3  2  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    5.9e-07   27.0   0.0      0.015   12.7   0.0    2.3  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    1.1e-05   22.9   0.0      0.019   12.2   0.0    2.4  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    1.7e-05   22.2   0.0    0.00036   17.9   0.0    2.4  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    5.4e-05   20.9   0.0     0.0019   15.8   0.0    2.6  3  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    0.00027   18.9   0.0       0.36    8.8   0.0    2.6  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0016   15.2   0.0       0.62    6.7   0.0    2.3  2  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
  ------ inclusion threshold ------
      0.013   13.8   1.0       0.81    7.9   0.0    3.0  3  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
      0.038   11.3   0.0        1.1    6.5   0.0    2.4  2  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial


Domain annotation for each model (and alignments):
>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   6.1e-12   2.3e-09       1      54 [.     318     371 ..     318     378 .. 0.95
   2 !   34.0   0.0   1.5e-11   5.5e-09     134     246 .]     486     612 ..     474     612 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 6.1e-12
    TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNnsgrseedlaeklssl 54 
                  f+fD+dG++ + +  ipga e+l  + ++g ++++++N++++s e+l++kls+ 
  MMETSP1174-20130828|14298_1 318 FIFDCDGTIYQPSGLIPGAEEMLTWIQESGYQYALLSNTGSTSYESLHKKLSKP 371
                  9**************************************************985 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 1.5e-11
    TIGR01460 134 epsdlsydelakaakllsegkvpfiaane......eklerlgdgafrlglgsilekikeksgree..ivvGKP....spalykaaeellkarakrr...kvlmvGDnlrtDvlgAkeaGldslLvltG 246
                    +d+s+ +++ ++ lls g  +fi + e       +  +      ++g g+++e++k+  +     +  GK      +++++ a e+lka+  +    ++++vGD+++tD++++  aG++s+L+ tG
  MMETSP1174-20130828|14298_1 486 VATDWSFVLFNAMTILLSFG-AEFIYTAEdatnpsIDERYPDTDFPMPGPGMFVEMLKKCMLFSDrcFCSGKGgnlgRKFIIERAIEMLKAQGHSGsrdEIMIVGDRFDTDIRAGSLAGIKSCLLETG 612
                  5689****************.9999999877776633345556668999999999999999887656899**722225677777778888877776999****************************9 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0055         2     100     146 ..     112     159 ..     108     172 .. 0.74
   2 !   23.4   0.0   1.9e-08   7.2e-06       1      59 [.     314     372 ..     314     377 .. 0.95
   3 !   20.2   0.0   1.9e-07     7e-05     219     256 ..     582     619 ..     563     637 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0055
    TIGR01452 100 ldekGiryvGdpsekdkkaar.ksgefmkleedvgavvvGydkhfdyv 146
                  + e+ +r  G+ ++++ +a +     f++++ +v  v v yd+++ y 
  MMETSP1174-20130828|14298_1 112 VYEMMVRIGGKDGNQKFNADEaAQAMFIRFDLNVDEVTVTYDNFLMYL 159
                  5556667777766666544440345688****************9996 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.9e-08
    TIGR01452   1 kvetfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnstksraeyakklaklG 59 
                  k+ +fifdcdG +++    +pGa e+l  +++ g +  +++n    s   + kkl+k G
  MMETSP1174-20130828|14298_1 314 KITGFIFDCDGTIYQPSGLIPGAEEMLTWIQESGYQYALLSNTGSTSYESLHKKLSKPG 372
                  6899*************************************************999865 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.9e-07
    TIGR01452 219 PartlmvGdrletdilfGkdgGlktvlvlsGvsrleei 256
                   + +++vGdr +tdi  G  +G+k  l  +G + +e  
  MMETSP1174-20130828|14298_1 582 RDEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHTIEMS 619
                  5789*****************************88754 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06   0.00065       2      56 ..     316     370 ..     315     418 .. 0.83
   2 !   33.4   0.0   1.8e-11   6.8e-09     126     246 ..     495     634 ..     485     637 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
    TIGR01457   2 kGylidldGtlykGkekieeavefvkelkkrdvpylfvtnnstrtpesvaellas 56 
                   G++ d dGt+y+ +  i+ a+e++  +++ +  y +++n  + + es+ ++l +
  MMETSP1174-20130828|14298_1 316 TGFIFDCDGTIYQPSGLIPGAEEMLTWIQESGYQYALLSNTGSTSYESLHKKLSK 370
                  59**********************************************9999975 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.8e-11
    TIGR01457 126 lakaalairkGakfistngdlaipt..er.....GllpGnGsliavlevat..gvkpvviGkp....eaiilekalkrlGte.....keetllvGdnyatdilaGidaGidtllvhtGvtkkeelkdk.eakptyvvesl 246
                  +   ++ +  Ga+fi t  d++ p+  er       +pG G ++ +l+ +     + +  Gk        i+e+a++ l  +     ++e+++vGd ++tdi+aG  aGi++ l++tG  + e   +  +  p+++ es+
  MMETSP1174-20130828|14298_1 495 FNAMTILLSFGAEFIYTAEDATNPSidERypdtdFPMPGPGMFVEMLKKCMlfSDRCFCSGKGgnlgRKFIIERAIEMLKAQghsgsRDEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHTIEMSDKFpTDIPSFAAESI 634
                  5666778888999999999888775334422211469********9998762245788899972222467******9996532223389*****************************8877755443134577777776 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.3e-05     0.027      23     102 ..     313     395 ..     296     416 .. 0.82
   2 !   12.7   0.0     4e-05     0.015     108     143 ..     582     617 ..     563     626 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.3e-05
    TIGR01668  23 kdikgvvlDkDntlvepdsnevapalkewieelkaaGlkllivSNnag...eqrvkalekelgitvlshavKkpgk..afrralk 102
                  ++i g ++D D t+ +p    ++p ++e +  +++ G + +++SN+ +   e+  k l+k+ g+   ++  K +++   + +a  
  MMETSP1174-20130828|14298_1 313 RKITGFIFDCDGTIYQPS--GLIPGAEEMLTWIQESGYQYALLSNTGStsyESLHKKLSKPGGLYECRPEGKTFPEgrCYTAADA 395
                  6799**********9986..689***********************998888888999998888888887776654335555555 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4e-05
    TIGR01668 108 seqvvvvGDrlfTDvllgnrnGsltilveplvhpde 143
                   +++++vGDr  TD+ +g   G+ + l e ++h  e
  MMETSP1174-20130828|14298_1 582 RDEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHTIE 617
                  679**********************99999988755 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00097      0.36       7      64 ..     314     372 ..     310     378 .. 0.88
   2 !   12.2   0.0   5.1e-05     0.019     205     241 ..     574     610 ..     561     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00097
    TIGR01459   7 dYdvFLlDlwGvvidGqeayPGavealaklkaegktvylvsnssk.svaeleatlkklG 64 
                  +  +F++D  G + +     PGa e+l+ ++  g    l+sn+++ s  +l+++l k G
  MMETSP1174-20130828|14298_1 314 KITGFIFDCDGTIYQPSGLIPGAEEMLTWIQESGYQYALLSNTGStSYESLHKKLSKPG 372
                  5679**************************************98725667899998765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5.1e-05
    TIGR01459 205 lkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                  +++     ++++++vGD + tDi ++  +gi + l+ 
  MMETSP1174-20130828|14298_1 574 KAQGHSGSRDEIMIVGDRFDTDIRAGSLAGIKSCLLE 610
                  55556667899**********************9985 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11        39      97     121 ..     331     356 ..     318     372 .. 0.82
   2 !   17.9   0.0   9.5e-07   0.00036     168     202 ..     581     615 ..     547     629 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.11
    TIGR02254  97 rllpgAlelleaLkkk.lrlyivtnG 121
                   l+pgA+e+l  +++  ++ ++++n 
  MMETSP1174-20130828|14298_1 331 GLIPGAEEMLTWIQESgYQYALLSNT 356
                  69************999999999995 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 9.5e-07
    TIGR02254 168 kkeevlmvGDsleaDikGaanaGldtvwlnpdrkp 202
                  +++e ++vGD +++Di+ + +aG+++++l++ +++
  MMETSP1174-20130828|14298_1 581 SRDEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHT 615
                  57899************************998775 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.4   1.5e+02       2      20 ..     315     333 ..     314     351 .. 0.75
   2 ?    1.3   0.0      0.14        52      96     121 ..     333     358 ..     327     370 .. 0.83
   3 !   15.8   0.0   5.2e-06    0.0019     168     220 ..     583     637 ..     565     638 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.4
    TIGR02253   2 ikavfFDlddTLidtskla 20 
                  i ++ FD d+T+++ s+l 
  MMETSP1174-20130828|14298_1 315 ITGFIFDCDGTIYQPSGLI 333
                  7889999999999988764 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.14
    TIGR02253  96 ypdvvkvLleLresGyrlgliTdglt 121
                  +p++ ++L+ ++esGy+ +l+ +  +
  MMETSP1174-20130828|14298_1 333 IPGAEEMLTWIQESGYQYALLSNTGS 358
                  69999****************99654 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 5.2e-06
    TIGR02253 168 eeavmvGDrlekDikGaknlglktvwinrgkskkeeddv..vekpdfeisslrel 220
                  +e + vGDr ++Di+ +  +g+k+ +++ g +  e  d+  ++ p f  +s+ +l
  MMETSP1174-20130828|14298_1 583 DEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHTIEMSDKfpTDIPSFAAESILDL 637
                  56788*******************9999887776665551244577777777766 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0028       1.1       2      54 ..     317     358 ..     316     371 .. 0.79
   2 !    8.8   0.0   0.00095      0.36     109     140 ..     580     611 ..     551     612 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0028
    TIGR01662   2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgig 54 
                  ++++D Dgt+          + + l+p++++ l+ ++++Gy+ ++++N     
  MMETSP1174-20130828|14298_1 317 GFIFDCDGTIY---------QPSGLIPGAEEMLTWIQESGYQYALLSNTG--S 358
                  579********.........3456679*********************87..3 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00095
    TIGR01662 109 idakesvvvGDavltDleaakrvGlatvlvas 140
                   + +e+++vGD+  tD+ a+  +G +  l+++
  MMETSP1174-20130828|14298_1 580 GSRDEIMIVGDRFDTDIRAGSLAGIKSCLLET 611
                  467899******************99877765 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0025      0.93       2      58 ..     317     369 ..     316     374 .. 0.86
   2 !    6.7   0.0    0.0017      0.62     257     296 ..     576     615 ..     559     633 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0025
    TIGR01456   2 gfalDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngGglserkraeels 58 
                  gf++D DG + + +  i+ga + l  ++++       + ll n+G+ s ++  ++ls
  MMETSP1174-20130828|14298_1 317 GFIFDCDGTIYQPSGLIPGAEEMLTWIQES----GYQYALLSNTGSTSYESLHKKLS 369
                  89***********************99998....45689999999988777766666 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0017
    TIGR01456 257 kqsaapfkklymvGDnPksDiiGarqaglfsilvktgvyd 296
                  ++ +    ++ +vGD   +Di+    ag+ s+l++tg++ 
  MMETSP1174-20130828|14298_1 576 QGHSGSRDEIMIVGDRFDTDIRAGSLAGIKSCLLETGTHT 615
                  455555567899**************************96 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.097        36       2      12 ..     318     328 ..     317     338 .. 0.88
   2 ?   -0.5   0.0      0.85   3.2e+02      75     110 ..     346     381 ..     331     398 .. 0.77
   3 ?    7.9   0.0    0.0022      0.81     121     149 .]     574     603 ..     569     603 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.097
    TIGR01549   2 ilfDidGTLvd 12 
                  ++fD+dGT++ 
  MMETSP1174-20130828|14298_1 318 FIFDCDGTIYQ 328
                  79*******96 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.85
    TIGR01549  75 agyrlgiiSngslraqklllrkledyfelilvsdep 110
                  +gy+  ++Sn+ + + + l++kl++   l +++ e+
  MMETSP1174-20130828|14298_1 346 SGYQYALLSNTGSTSYESLHKKLSKPGGLYECRPEG 381
                  689999****************99998888777654 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0022
    TIGR01549 121 aaleslglepevlhvGDn.lsDieaaknag 149
                  +a+ + g  +e++ vGD+  +Di+a++ ag
  MMETSP1174-20130828|14298_1 574 KAQGHSGSRDEIMIVGDRfDTDIRAGSLAG 603
                  6777888899****************9887 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.077        29      84     110 ..     330     356 ..     314     367 .. 0.86
   2 ?    6.5   0.0     0.003       1.1     160     200 ..     584     625 ..     573     638 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.077
    TIGR01449  84 tsvfpgveaaleaLrakGlrlglvtnk 110
                  + + pg+e++l  ++  G++++l  n 
  MMETSP1174-20130828|14298_1 330 SGLIPGAEEMLTWIQESGYQYALLSNT 356
                  56789******************9996 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.003
    TIGR01449 160 qmvyvGDs.evDiaaArAAGlpsvlltyGYrygeaveelpad 200
                  +++ vGD   +Di a   AG++s+ll  G +  e  ++ p+d
  MMETSP1174-20130828|14298_1 584 EIMIVGDRfDTDIRAGSLAGIKSCLLETGTHTIEMSDKFPTD 625
                  56789*98468******************9988877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.70
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|14305_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|14306_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|14315_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.64
# Mc/sec: 185.61
//
Query:       MMETSP1174-20130828|14311_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.72
# Mc/sec: 1525.21
//
Query:       MMETSP1174-20130828|14317_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1784.13
//
Query:       MMETSP1174-20130828|14323_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 192.91
//
Query:       MMETSP1174-20130828|14320_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   14.1   0.0     0.0066   13.7   0.0    1.2  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.6e-06    0.0066     161     243 ..      15      96 ..      10     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.6e-06
    TIGR03896 161 GkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkee 243
                  G++ + + g ++ k g+  da +i+  Ge el  +  ++ +     + G i+ e+sf+n ++     v ++ +  l ai  ++
  MMETSP1174-20130828|14320_1  15 GTTTDYTNGALIAKHGKRSDACFIVESGECELCFKRGKSKQIREIKKEGSIFAETSFMNFSEL-DFDVISIGNCTLRAITSDD 96 
                  7888888888889999*****************988776665556677***********9988.7888888888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 843.03
//
Query:       MMETSP1174-20130828|14322_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.1   0.1      0.042   10.7   0.0    1.1  1  TIGR03274 methan_mark_7: putative methanogenesis marker protein 7


Domain annotation for each model (and alignments):
>> TIGR03274  methan_mark_7: putative methanogenesis marker protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     1e-05     0.042     196     250 ..      44      99 ..      29     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1e-05
    TIGR03274 196 aleklvevvskiidkrrkelakdPlivspvv.vkdeiekevpeikevlsPipivlq 250
                  +l++++  v +++ k ++  a+dP +vsp   ++ ++++   +++ vls + ++ q
  MMETSP1174-20130828|14322_1  44 RLHEVIRHVFSMVAKAKRMKAADPTAVSPTTaMMAKLKRLGTKLEAVLSELQVMRQ 99 
                  7999999999*****************99862566777777788889998888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.45
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|14328_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|14329_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1174-20130828|14327_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1015.06
//
Query:       MMETSP1174-20130828|14326_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.2    2.8  12.9         12    2.1   8.9    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   8.9    0.0029        12      21     141 ..     296     411 ..     290     426 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0029
    TIGR01642  21 keR.sRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqakasqvansvpgi 141
                  keR +R  +  + r R+R++++  ++       R+  r +s +  s  +  + + R  ++   r  + +   r+r++  ++ +e +  d+kr+  + +p++  + ++  ak+++v + + ++
  MMETSP1174-20130828|14326_1 296 KERlERAAREGELRARNRQQEKNAQA------TRRTARSRSTENLSSADAIHDHERGDKPPPHRLETHHWPGREREKAAAPVREMQTTDRKRTARQSEPSGLGLSNKQRAKKQKVGGALESL 411
                  44423444444555555555533333......33333333444344444444445555555556666677778888899999999999*****************99999999998776553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.11s 00:00:00.64 Elapsed: 00:00:00.65
# Mc/sec: 1598.08
//
Query:       MMETSP1174-20130828|14334_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 73.07
//
Query:       MMETSP1174-20130828|14336_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 697.07
//
Query:       MMETSP1174-20130828|14331_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041    9.4  21.7      0.059    8.8  15.0    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.3    5.1   5.5        1.4    4.9   3.8    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        3.2    3.1  15.7        3.7    2.8  10.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        3.5    3.6  11.4        4.9    3.1   7.9    1.1  1  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  15.0   5.8e-05     0.059     215     397 ..      45     231 ..      41     250 .. 0.40

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.8e-05
    TIGR02168 215 ykelkeelrelelallvlrleelkeeleeleeelkeaee.eleeleaelkeleeeleelrlekseleeeleelqkel.qelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleel....keelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlas 397
                  ++++k++++e+  ++ ++rl++ ++e+e++e+ l+ea+  + ++le +l++   +++el++++    e+  ++ +++ q+++a+ ++ +  i+  + +++++e++ e+  ++  e+++    +++e+++ + e+++l    +e  +  eae+e++++ ++e++++++ l++e  +++ e  e+++++++
  MMETSP1174-20130828|14331_1  45 FQQKKDDVDEVTSQIFLERLQAGRREVEAIEARLTEAKGiSTDDLEGQLNAELGRYAELEAQRPDFTESRPRYGDRMrQRISAACEEYDDVIRDVELKKAAVESSHEAKVAE--ESQKAAVAKAREADAASREKARLaaeaEETRAVKEAEIEAEKKRVQESSEEAKRLRDERLKKEGEELEARKEAQK 231
                  5566666666666666666666666666666666655541455666666666666666666655554444333333212233333333333333333333333332222211..111111111111122222222220000222222222222222233333333333333333333333222222222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.8    0.0014       1.4     317     437 ..     134     222 ..      35     257 .. 0.38

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0014
    TIGR00934 317 s........qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeee 437
                           + +++  ++ k+ +                                         ++k  + k rea+  ++ek+r a ++++++  ++ +++a k++++e  ++ ++ + +  +++ ee
  MMETSP1174-20130828|14331_1 134 DvirdvelkKAAVESSHEAKVAE----------------------------------------ESQKAAVAKAREADAASREKARLAAEAEETRAVKEAEIEAEKKRVQESSEEAKRLRDERLKKEGEE 222
                  11121222222222222222222........................................223333333333333333333333333333333332222222222222111111111111111111 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  10.9    0.0036       3.7     729     836 ..     126     231 ..      53     242 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0036
    TIGR00927 729 apapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeetea 836
                  + a e+  d   d   ++++ e+ ++++  +e ++a+ +a++++ + +  e+++   + e +++ +e eieae+k  +e+  e++  + + + ++e ee+ea +e+++
  MMETSP1174-20130828|14331_1 126 SAACEEYDDVIRDVELKKAAVESSHEAKVAEESQKAA-VAKAREADAASREKARLAAEAEETRAVKEAEIEAEKKRVQESSEEAKRLR-DERLKKEGEELEARKEAQK 231
                  4455555566666666666666666665554444444.66666666655555544444444556666677777766666666665555.3333444555555555554 PP

>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.9    0.0048       4.9     332     423 ..     141     232 ..     120     237 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0048
    TIGR00596 332 lrqyrkqreklkklakevkkkeaakenassr.vnktlrkekvaskrrrvrgakeaaveklreeetdevqvvekdeeleeeldeleegeaaeee 423
                  l++   +  + +k+a+e++k   ak ++++   +++ r  ++a++ r v+ a+  a ek+r +e++e  +  +de+l++e++ele +++a+++
  MMETSP1174-20130828|14331_1 141 LKKAAVESSHEAKVAEESQKAAVAKAREADAaSREKARLAAEAEETRAVKEAEIEA-EKKRVQESSEEAKRLRDERLKKEGEELEARKEAQKH 232
                  5555666777889999***9999999999962334444455555566666655555.888888998999999*************99765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       442  (0.107752); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 969.97
//
Query:       MMETSP1174-20130828|14338_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 1044.27
//
Query:       MMETSP1174-20130828|14341_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.49
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|14330_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00053   17.1   0.1     0.0011   16.1   0.0    1.5  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.13   5.3e+02     495     505 ..     184     194 ..     104     307 .. 0.58
   2 !   16.1   0.0   2.6e-07    0.0011     166     262 ..     352     444 ..     337     461 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.13
    TIGR01628 495 aqsknqmqqvv 505
                  aq k+ +++++
  MMETSP1174-20130828|14330_1 184 AQVKTSVSPAS 194
                  22222222222 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.6e-07
    TIGR01628 166 kksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkra 262
                  kk+ + ++ e   t ++vKn++ ++ e+ l+ +F ++ +    i    + +r  gfafv   ++ + ++Av +  g  i+    +k l V + +k +
  MMETSP1174-20130828|14330_1 352 KKHVQLTADEVPSTAVFVKNIEVDMGEEDLKAVFESYLQDNGHILVAPHFDR--GFAFVDLGSTAAVARAVSASRGDGIQ--VGEKRLTVEPSKKPV 444
                  444444666677899**********************999999888887777..7****************999998888..567778888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.48
# Mc/sec: 1355.64
//
Query:       MMETSP1174-20130828|14343_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|14346_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.81    8.0  16.2      0.038   12.2   6.4    2.0  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4     0.092   3.8e+02      19      32 ..      15      28 ..       9      28 .. 0.56
   2 ?   12.2   6.4   9.2e-06     0.038      21      42 ..     115     136 ..     100     137 .] 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.092
    TIGR03892 19 evgassgatstsss 32
                   ++ s++ts+ ss
  MMETSP1174-20130828|14346_1 15 TKDGDSDVTSSLSS 28
                 33445666666654 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 9.2e-06
    TIGR03892  21 gassgatstsssSsCsTcscts 42 
                  +a+ +++stss+Ss+s++s++s
  MMETSP1174-20130828|14346_1 115 DAGHHSSSTSSTSSSSSSSSSS 136
                  4578999999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 669.72
//
Query:       MMETSP1174-20130828|14349_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 906.09
//
Query:       MMETSP1174-20130828|14356_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|14355_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.0   1.4      0.011   13.0   0.0    1.7  3  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.39   1.6e+03     118     136 ..      40      58 ..      37      59 .. 0.75
   2 ?   -3.3   0.0      0.25     1e+03      71      83 ..      84      96 ..      78      98 .. 0.73
   3 ?   13.0   0.0   2.7e-06     0.011     217     251 ..     125     159 ..     119     160 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.39
    TIGR03695 118 lknDeqlAkrleeegleaf 136
                   ++D+qlA  + + ++++f
  MMETSP1174-20130828|14355_1  40 KEADAQLAASVLDPEIRQF 58 
                  5789999998888888777 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.25
    TIGR03695 71 ekviLvGYSlGGR 83
                 +  +L G SlGG+
  MMETSP1174-20130828|14355_1 84 QLQVLSGVSLGGK 96
                 5567899999995 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 2.7e-06
    TIGR03695 217 qkllpalklevieeaGHnihlenpeafakileefl 251
                  ++ +p+ ++e+ie+a H +h+  p+++ +i++ef+
  MMETSP1174-20130828|14355_1 125 KSFFPTYQIETIENANHWVHVSAPDRLREIISEFV 159
                  5678999*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.64
# Mc/sec: 336.16
//
Query:       MMETSP1174-20130828|14350_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-09   33.5   0.2       0.04   11.5   0.0    4.0  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.1e-08   29.4   9.4    0.00018   17.3   0.4    3.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    6.9e-07   26.9   1.1      0.021   12.2   0.0    3.7  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0015   14.6   2.3        0.2    7.6   0.3    2.3  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17   1.8e+02      95     117 ..     144     167 ..     135     172 .. 0.69
   2 !   11.5   0.0   3.9e-05      0.04      23      85 ..     180     241 ..     176     249 .. 0.88
   3 !    6.7   0.0    0.0011       1.2      58     120 ..     424     487 ..     418     499 .. 0.85
   4 !    9.6   0.0   0.00015      0.15      56     114 ..     502     560 ..     492     562 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.17
    TIGR02552  95 cll.algekeeAlkaLklaieiae 117
                  cll + g++e A +aL+ a+ ia 
  MMETSP1174-20130828|14350_1 144 CLLgQYGQPEAAVNALAYALHIAP 167
                  444367888888888888887765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.9e-05
    TIGR02552  23 alAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                  al++++ ++g++ee++ + +l a+ +pt+ + w  L+ +l +++  e+A++aY +a  + +++
  MMETSP1174-20130828|14350_1 180 ALGMTMREAGRLEESVPVLKLAAQSNPTDPNIWWNLGTALYQTD-QETAQDAYMRACHVAPSN 241
                  678888999****************************9988765.589******999887765 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0011
    TIGR02552  58 LaaclqalkeyeeAi.aaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  L++c+q  + +e+ i +a  la+++ +  p+   ++++c+l +g   ++lk L+ a+++ae+ +
  MMETSP1174-20130828|14350_1 424 LSVCVQHDQGHEGSIrDALLLAVKVCPVLPETQAEIGKCMLRCGMVDDSLKYLEKALKLAEARD 487
                  7889888888887764689999999999******************************998443 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00015
    TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                   ++++++   ++ ++Ai+ + la+ + +      + +a  l + g+++eAl+ L++a++
  MMETSP1174-20130828|14350_1 502 HAIGLAHSVNSDVDQAIKSFRLALEVAPAVVHTRFLLARALAENGDEKEALEHLETAAK 560
                  5789999999********************************************99975 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.7e-06    0.0017     738     801 ..     177     239 ..     135     270 .. 0.52
   2 ?    1.4   0.2     0.011        12     474     507 ..     279     312 ..     252     317 .. 0.72
   3 !   17.3   0.4   1.8e-07   0.00018     834     897 ..     495     558 ..     468     560 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-06
    TIGR02917 738 tvikLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkap 801
                   +  L+   + +g+ +e++ +l+   + +p+d  +  +l+  +  + d++ A+ +Y  +   ap
  MMETSP1174-20130828|14350_1 177 LLSALGMTMREAGRLEESVPVLKLAAQSNPTDPNIWWNLGTALY-QTDQETAQDAYMRACHVAP 239
                  23334444444555555555555555555555555555555444.5555555555555555555 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.011
    TIGR02917 474 iylgkkdlakAreafekALkiepdffpAlanLAr 507
                  ++   + l+ A ea++++L  epd +  lanLA+
  MMETSP1174-20130828|14350_1 279 ALNRTRLLDTAAEALRESLRREPDAACTLANLAN 312
                  4555566677777777777777777777777775 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 1.8e-07
    TIGR02917 834 pnqpailDTlGwvlvekgeakealkllrkAvklapeaaairyhlakallatgekdeArklLekl 897
                  p+ +++l   G +   + + ++a+k +r A++ ap  + +r+ la al+++g+++eA + Le +
  MMETSP1174-20130828|14350_1 495 PGRAPVLHAIGLAHSVNSDVDQAIKSFRLALEVAPAVVHTRFLLARALAENGDEKEALEHLETA 558
                  5556666666666666666667777777777777777777777777777777777766666654 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0     2e-05     0.021      45     148 ..     150     259 ..     140     279 .. 0.60
   2 ?    3.1   0.0     0.013        13     140     171 ..     458     489 ..     450     494 .. 0.86
   3 !    7.2   0.1   0.00071      0.73      39      93 ..     506     560 ..     496     564 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2e-05
    TIGR02521  45 gdlekAkenlekAleldpkd.....adanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie..dpkYeqparsyeNaglcalka 148
                  g+ e+A ++l  Al+++p+       +  +al++   + g+le+     + A + +p ++++  N Gt L+q+ + e A+  +++A +    ++e  a +++N+++ +l++
  MMETSP1174-20130828|14350_1 150 GQPEAAVNALAYALHIAPATgwplrPRLLSALGMTMREAGRLEESVPVLKLAAQSNPTDPNIWWNLGTALYQTDQ-ETAQDAYMRACHvaPSNWEGVAPVLNNLATMLLDQ 259
                  666666666666666666542222245566677777777777777777777777777777777777777776654.44445555543310234666666666666655555 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.013
    TIGR02521 140 Naglcalkagdtekaekyltralkidpkrpes 171
                   +g c+l+ g ++   kyl++alk+ + r  +
  MMETSP1174-20130828|14350_1 458 EIGKCMLRCGMVDDSLKYLEKALKLAEARDSA 489
                  6899********************98877665 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00071
    TIGR02521  39 leYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAlt 93 
                  l+   + d+++A ++   Ale++p+  ++   lA ++ + g++++A e+ ++A +
  MMETSP1174-20130828|14350_1 506 LAHSVNSDVDQAIKSFRLALEVAPAVVHTRFLLARALAENGDEKEALEHLETAAK 560
                  4445567888888888888888888888888888888888888888888888765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.3   0.00019       0.2      84     143 ..     173     234 ..     135     300 .. 0.88
   2 !    6.6   0.0   0.00039      0.39      85     149 ..     497     561 ..     456     569 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00019
    TIGR03939  84 lparelealAkAaRnekqwdkAlelyrkllqrdPknpdll..lGlaltladagkdeeAlkal 143
                  l  r l al+  +R++++ ++++ + + + q +P++p+++  lG al ++d++  ++A  ++
  MMETSP1174-20130828|14350_1 173 LRPRLLSALGMTMREAGRLEESVPVLKLAAQSNPTDPNIWwnLGTALYQTDQETAQDAYMRA 234
                  55677999999***************************8866899*******9999997766 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00039
    TIGR03939  85 parelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelker 149
                   a++l+a++ A   + + d+A++ +r +l+ +P     +  la +la++g+++eAl++l+ ++++
  MMETSP1174-20130828|14350_1 497 RAPVLHAIGLAHSVNSDVDQAIKSFRLALEVAPAVVHTRFLLARALAENGDEKEALEHLETAAKQ 561
                  467888988898899999*****************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.59
# Mc/sec: 1360.16
//
Query:       MMETSP1174-20130828|14357_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.61
# Mc/sec: 320.24
//
Query:       MMETSP1174-20130828|14353_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.10s 00:00:00.42 Elapsed: 00:00:01.06
# Mc/sec: 504.30
//
Query:       MMETSP1174-20130828|14360_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.64
# Mc/sec: 183.55
//
Query:       MMETSP1174-20130828|14361_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 186.51
//
Query:       MMETSP1174-20130828|14362_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|14363_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|14365_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|14366_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|14368_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.49
# Mc/sec: 401.35
//
Query:       MMETSP1174-20130828|14369_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   22.0   0.0    1.7e-05   21.9   0.0    1.0  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    0.00076   16.2   0.0    0.00081   16.1   0.0    1.0  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.4e-09   1.7e-05      73     159 ..       2      80 .]       1      80 [] 0.87

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 8.4e-09
    TIGR03921  73 vAPdakilpirqtskafedkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvkyalekdvvvvAaagne 159
                  vAP+a+i+++++ +++        + ++   l +a   A+ +  ++ N+S  +++ ++++   +el++ v   ++ +++ +A+agn+
  MMETSP1174-20130828|14369_1   2 VAPGAQIVSLKIGDSRLG------SMETGVGLTRAMIEAVKHKCDILNMSYGEAVCVEEKGRFKELAEKVV--YKHGIMFLASAGNN 80 
                  8***************99......455555677777788888899*********************99875..589*********96 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-07   0.00081      37      99 ..      18      80 .]       2      80 .] 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.9e-07
    TIGR03895 37 taekisqldlaraielAveagaaiinisagqltdtgeaeellekavklcqenniLivaaaGnd 99
                   ++ + + l+ra+  Av++  +i+n+s g+     e  ++ e a k   ++ i+ +a+aGn+
  MMETSP1174-20130828|14369_1 18 LGSMETGVGLTRAMIEAVKHKCDILNMSYGEAVCVEEKGRFKELAEKVVYKHGIMFLASAGNN 80
                 556777899*****************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|14370_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-95  316.5  15.7    6.1e-95  316.0  10.9    1.1  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    2.2e-18   64.5  10.0    4.9e-18   63.4   7.0    1.5  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family
      1e-08   33.0   6.0    4.7e-08   30.8   2.5    2.8  2  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0  10.9   4.5e-98   6.1e-95      26     301 ..       8     282 ..       5     284 .. 0.98

  Alignments for each domain:
  == domain 1    score: 316.0 bits;  conditional E-value: 4.5e-98
    TIGR03718  26 rkahevsvkeallwslvwvalallFavlvylllgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlleeeeeedleenllvrllkkvlpvtdklegekffvrekgkrlatplllvlvlveltdliFAvDSiPaifavtqdpfivytsnifailGLralYfllagllerlvyLkyglaviLvfigvKlllseaelveipiavsLavivavlavsvvasllkt 301
                  +++++  ++++++++++ va a +F+  +++++g+  + ef++gyl+E+sLsvDNlfvfl++f++f+vp e q rvL+wGi+ga+++R+++i++G+a +++f+ v++if+a+l++++vk+++e++e +dl++n+++++ k +   +d+++gekf++  +++r atplll+lv++el+d +FAvDSiPa+++v+qd+++vy+sn+fai+GLr+lY l+a+++e l+yL+ ++a++L+fi++K+ll+ + ++eipi++sL v++++la ++v+sl+++
  MMETSP1174-20130828|14370_1   8 KSQEARRFRSSVIYTVLIVAAAAAFGSGIWVVKGRRSGFEFFAGYLVEQSLSVDNLFVFLMVFNYFQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQRFRSVILIFAAILLVSAVKLFFESDEPQDLSQNVVMKFSKFCTGAVDEYDGEKFITVVNNRRRATPLLLCLVCIELSDFVFAVDSIPAVIGVSQDALVVYSSNLFAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLLEFF-HYEIPIHLSLLVVALLLAGGIVLSLFFK 282
                  55677889********************************************************************************************************************************************************************************************************************************************955.56***********************987 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   7.0   3.6e-21   4.9e-18       7     185 ..      53     258 ..      49     283 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 3.6e-21
    TIGR03716   7 vlEglLsaDnAvvlAvlvk..hLPekqrkkaLfYgliGAyvfRfialllasflik.lweikalgalYLlylalkhllkkkkekeeeekekkkek.........................keFWktvikveladlaFsvDsilaavalsekllvvllGgllGillmRfvaelfvkllekipeLetaAfllvglvgvkllletlaheei 185
                  ++E  Ls+Dn  v+ ++ +  ++P + + + L++g+iGA ++R +++ +++  i+ +  + ++ a+ Ll  a+k ++++ + ++ +++  +k +                         +     ++ +el d++F+vDsi a +++s+++lvv+   l+ i+ +R + +l+ k +e ++ L  a  l++ ++++k+lle   h ei
  MMETSP1174-20130828|14370_1  53 LVEQSLSVDNLFVFLMVFNyfQVPLECQGRVLTWGIIGAVLMRGVMITIGVAAIQrFRSVILIFAAILLVSAVKLFFESDEPQDLSQNVVMKFSkfctgavdeydgekfitvvnnrrraTPLLLCLVCIELSDFVFAVDSIPAVIGVSQDALVVYSSNLFAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLLEF-FHYEI 258
                  57999*****9997666553379**************************98877538899999999***********99999988877776655799*******************999899999*************************************************************************954.34443 PP

>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   2.5   3.4e-11   4.7e-08      11     174 ..      57     251 ..      51     252 .. 0.85
   2 ?   -2.0   0.0      0.41   5.6e+02      58      72 ..     264     278 ..     253     301 .. 0.58

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 3.4e-11
    TIGR03717  11 vLagDnavvialaar..kLpkkqrkkailvGvaaAvvlRillalv.avllLeipllkliggllLlwiavkllleeeeeeeeeekase.............................tllkaiktiviADvvmslDnvlavagaakgellllvlGlllsiplivlgsklvlkllerfpliiyigaallayvagemlv 174
                   L+ Dn  v  ++ +  ++p + + +++ +G+++Av++R +++++ ++ + +   + li +++Ll+ avkl+ e++e ++ +++                                 ll  +  i + D+v+++D + av g++++ l++    l ++i  +    +lv+k +e +  +  + a +l +++++ml+
  MMETSP1174-20130828|14370_1  57 SLSVDNLFVFLMVFNyfQVPLECQGRVLTWGIIGAVLMRGVMITIgVAAIQRFRSVILIFAAILLVSAVKLFFESDEPQDLSQNVVMkfskfctgavdeydgekfitvvnnrrratPLLLCLVCIELSDFVFAVDSIPAVIGVSQDALVVYSSNL-FAIMGLRSLYTLVAKAVEDLAYLRPAVALVLCFISIKMLL 251
                  5899999998887763367889999**************6665551677788999999999999999******999988876533336788************************999999************************9887766665.455555556699**************************97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.41
    TIGR03717  58 LeipllkliggllLl 72 
                  L +  l l+gg++L 
  MMETSP1174-20130828|14370_1 264 LLVVALLLAGGIVLS 278
                  233444555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1299.81
//
Query:       MMETSP1174-20130828|14375_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|14377_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 355.64
//
Query:       MMETSP1174-20130828|14380_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.57    7.3  13.7       0.77    6.9   9.5    1.1  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
        4.8    3.2   8.9        5.4    3.0   6.2    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.5   0.00038      0.77     121     213 ..      30     123 ..      25     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00038
    TIGR00570 121 kleaykkenkeviqknkekltreqeele..ealelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldvaeliaehkeksvklekeve 213
                  +++   +  ke +q  + +++ e  e+   +al++e+e+ e+krl+ +k e+e   + +++k++ + e ++  +d+    +e ++++vk +++++
  MMETSP1174-20130828|14380_1  30 RMKETAERVKEQVQAARDRSAAEATEIRrlQALRVENERIEAKRLETKKKEKEAARELQRKKEEEVREAKQRVRDARLRAKE-AKEAVKVRRQQR 123
                  6777788899**********999999973367899********************************999999998877766.666777666554 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   6.2    0.0026       5.4     256     382 ..      18     148 ..       2     197 .. 0.49

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0026
    TIGR00934 256 pedlyrsimmlqekheatakirdkiseanslaa..esdeessesrriqek.ik.rrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkr 382
                  +e+ +r+  +   ++e+ ++++++++ a+   a   ++ +  ++ r++++ i+ +rl t++ ek+  ++l+r++++++ + ++ vr  r + ++  ea  + + +r ++ ++  ++ +   k+ ++  k++
  MMETSP1174-20130828|14380_1  18 AEQAERALLESHRMKETAERVKEQVQAARDRSAaeATEIRRLQALRVENErIEaKRLETKKKEKEAARELQRKKEEEVREAKQRVRDARLRAKEAKEAVKVRRQQRPQNGDRGQQDSWAIPKMASQGKKEQ 148
                  34444444444445555555555544333222200222222333333322122123334444444444444444444444444444444444444444555555554444445555554444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       457  (0.111409); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 808.43
//
Query:       MMETSP1174-20130828|14378_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 1665.09
//
Query:       MMETSP1174-20130828|14381_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-97  323.6   0.0    6.1e-97  323.4   0.0    1.0  1  TIGR00435 cysS: cysteine--tRNA ligase
      2e-54  182.8   0.2    3.3e-54  182.1   0.1    1.4  1  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
      6e-09   32.3   0.0      8e-09   31.9   0.0    1.1  1  TIGR00395 leuS_arch: leucine--tRNA ligase
     0.0014   15.3   0.0     0.0054   13.3   0.0    1.8  2  TIGR00398 metG: methionine--tRNA ligase
     0.0074   12.3   0.0      0.014   11.4   0.0    1.4  2  TIGR00392 ileS: isoleucine--tRNA ligase
     0.0075   12.1   0.0      0.009   11.8   0.0    1.1  1  TIGR00422 valS: valine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.4   0.0  8.9e-100   6.1e-97      97     460 ..       2     379 ..       1     386 [. 0.88

  Alignments for each domain:
  == domain 1    score: 323.4 bits;  conditional E-value: 8.9e-100
    TIGR00435  97 edleaLnvlkpdlelrvsekideiielvekliekgyaYvssdgdvyfdvskfkdYgklskqqldeleagerskvneadknklDFvLWkaskeg..evkweSpwG..kGrPgWHiECsvmaseilgeeldiHsGGvDlifpHHeNEiaqsealfdkqlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRllllsvhyrnqldfseelleeaknalerlakalralkedlasakeiskkksp....lekefeaefvEaldddlntaealavlselvkksn....lkeiskakaallieelialesvlekllglpsks......vqagsndd.elgeledlieersearkkkelkkaDkiRdellkkgivLeDtpnG 460
                  +dl aLn+++++ ++r++e+++ei+e++++l+ kg+aY+++  + yf+v +   Yg++++ +++ ++  ++ +  +a++n+ DF++Wka k    +v+w Sp G  kGrPgWHiECs+ma+++lg++ld+H+GGvDl+fpHHeNEiaqsea+++k ++ +++Hngf++i+ eKmSKS gNf t++ l  k + ra+R+l+++++yr q++f+ + l++a ++l+rl k +  +++ ++  ++   + +p    ++    ++f+ a++ddlnt++a+a ++ lvkk         ++ a+a  ++e +++l +vl+++ ++ps +      + a + d+   +e+ +l+++r+ea+ +k++++aD+ R  +  +g+++ D + G
  MMETSP1174-20130828|14381_1   2 QDLAALNIKPASHYPRATEHMPEIVEMIKSLVSKGMAYETN-DSFYFSVPQSTRYGRMARLDVEGMQVLAEGQ--DAKQNSRDFAIWKAWKPSdgDVSW-SPAGltKGRPGWHIECSAMAHHYLGDTLDLHAGGVDLVFPHHENEIAQSEAFTGKSFATHWVHNGFVNIDSEKMSKSKGNFRTLRSLGSKEEIRAFRYLCVTAQYRMQINFTPQVLSAAIKSLKRLDKFVALARSAAE-LGKKDGDVHPdveeEVSSCLKQFTTAMNDDLNTPRAIASVFGLVKKLTpllkEDGVTRASAMRVTELMSSLDDVLGIMYDVPSYDatdptvEDAVEGDEpIPEEVLQLVQRRTEAKASKDWAAADECRAAVSALGFTIADVKGG 379
                  699*************************************9.9*********************999988655..899***********9987669***.5655449***********************************************************************************************************************998885555554.4444445555433355667899999*********************999865566788888889999999*********999988666653222222223668999**********************************9888 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.1   4.8e-57   3.3e-54     112     409 ..       2     312 ..       1     314 [. 0.80

  Alignments for each domain:
  == domain 1    score: 182.1 bits;  conditional E-value: 4.8e-57
    TIGR03447 112 edmealrvlpPrdyigavesidevvelvekllaeGaayevedeeypdvyasveatekfGyeskldratmeelfaerGGdPdraGkkdpldallwraar..eGePswd.splGaGrPGwhiecsaialkrlgaefdiqGGGsdlifPhhefsaahaeaatgeerlarhyvhagmigldGekmskskGnlvlvsklraaGeePaairlavlaghyredrewtdevlaeaee...rlarw....raala..aee.......aeeaaelvaklreeladdldtpaalaavdewaaeak...keag.sdse..aaalvaeavdallGv 409
                  +d++al++ p ++y  a+e ++e+ve+++ l+++G+aye +d      y+sv +++++G +++ld + m+ l ae G       k+++ d  +w+a +  +G+ sw  + l +GrPGwhiecsa+a ++lg ++d++ GG dl+fPhhe   a++ea tg+  +a h+vh g++ +d ekmskskGn+  +  l ++ ee  a r   ++  yr + ++t +vl++a +   rl+++    r+a++  +++       +ee+++ ++++ +++ ddl+tp+a+a v   +++ +   ke+g ++++    + + +++d +lG+
  MMETSP1174-20130828|14381_1   2 QDLAALNIKPASHYPRATEHMPEIVEMIKSLVSKGMAYETND----SFYFSVPQSTRYGRMARLDVEGMQVL-AE-GQ----DAKQNSRDFAIWKAWKpsDGDVSWSpAGLTKGRPGWHIECSAMAHHYLGDTLDLHAGGVDLVFPHHENEIAQSEAFTGK-SFATHWVHNGFVNIDSEKMSKSKGNFRTLRSLGSK-EEIRAFRYLCVTAQYRMQINFTPQVLSAAIKslkRLDKFvalaRSAAElgKKDgdvhpdvEEEVSSCLKQFTTAMNDDLNTPRAIASVFGLVKKLTpllKEDGvTRASamRVTELMSSLDDVLGI 312
                  79*************************************999....89*********************876.55.44....5799999******98744799***9899**************************************************9.9*************************999998765.67889999999999*************997511155555322244444322222221111345666778899999***********998877765311122220222222223445666666665 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.2e-11     8e-09     574     744 ..     125     291 ..     117     313 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.2e-11
    TIGR00395 574 ldlrisakdLipnhLtfyifthvaifPeefWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkeal.enlelrkavkaalfelkkdvdyyrrrsge 744
                  ldl+  + dL+  h    i +  a f  + +    v nG+v ++++k+skskGn+ tl++   k    + r yl  +a++   ++f  + + aa+k l+rl +f+        +e g++   +   +++++   +k+ + a+ + l++ +a+ a++f l k +   ++  g+
  MMETSP1174-20130828|14381_1 125 LDLHAGGVDLVFPHHENEIAQSEA-FTGKSFATHWVHNGFVNIDSEKMSKSKGNFRTLRSLGSKEEIRAFR-YLCVTAQYRMQINFTPQVLSAAIKSLKRLDKFVALARSA--AELGKKDGDVHPDVEEEVSSCLKQFTTAMnDDLNTPRAI-ASVFGLVKKLTPLLKEDGV 291
                  788888999998888888877666.566666777899***************************9999999.66777899999*********************9866555..7999999999999***********9999835799****9.8888888887766666555 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.15     1e+02      90     133 ..      17      58 ..       2      82 .. 0.69
   2 !   13.3   0.0   7.9e-06    0.0054     313     407 ..     156     249 ..     146     289 .. 0.67

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.15
    TIGR00398  90 rTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdr 133
                  r t  eh   + ++ + l+++G  ye + + +++v +++ +   
  MMETSP1174-20130828|14381_1  17 RAT--EHMPEIVEMIKSLVSKGMAYETNDSFYFSVPQSTRYGRM 58 
                  444..5777777889999**********9999999888766554 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.9e-06
    TIGR00398 313 kqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNael..vnklgNllnRtlgfikkyfegklksvke 407
                  ++ v  g+++++ +kmSkSkgn+     l  + ++ ++RY     ++    ++f+ + + + +   l  ++k++ l+ R ++   k+ +++ + v+e
  MMETSP1174-20130828|14381_1 156 THWVHNGFVNIDSEKMSKSKGNFRTLRSLGSKEEIRAFRYLC-VTAQYRMQINFTPQVLSAAIK-SLkrLDKFVALA-RSAAELGKKDGDVHPDVEE 249
                  677889*****************9999988889999999854.456666778888888888773.332245555554.3333333333434444444 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.77   5.2e+02     151     184 ..      20      53 ..      18      57 .. 0.83
   2 !   11.4   0.0     2e-05     0.014     599     664 ..     159     223 ..     142     263 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.77
    TIGR00392 151 eyeesvlellkelaekgllkrdlkvvywspelet 184
                  e + +++e++k l+ kg+ ++ +   y+s+  +t
  MMETSP1174-20130828|14381_1  20 EHMPEIVEMIKSLVSKGMAYETNDSFYFSVPQST 53 
                  5677889999999999999999999999986665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2e-05
    TIGR00392 599 ithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvassdpaedlkfseeilkevaekllki 664
                  + +Gfv + + +KMSKs+gN     ++  k    ++R++ +++++  +++f  ++l  + ++l++ 
  MMETSP1174-20130828|14381_1 159 VHNGFV-NIDSEKMSKSKGNFRTLRSLGSKEEIRAFRYLCVTAQYRMQINFTPQVLSAAIKSLKRL 223
                  556775.66779*******************************************99998877765 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.3e-05     0.009     466     579 ..     108     222 ..      71     277 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
    TIGR00422 466 gWpeekkdlkkfyptsll...vtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnK 579
                  gW+ e ++++++y  ++l     g D++f      i +s a+tg+  f + ++h    + + +KmSKS+gN      l +k    a R+  ++       in+  + ++aa k l++
  MMETSP1174-20130828|14381_1 108 GWHIECSAMAHHYLGDTLdlhAGGVDLVFPHHENEIAQSEAFTGKS-FATHWVHNGFVNIDSEKMSKSKGNFRTLRSLGSKEEIRAFRYLCVTAQY-RMQINFTPQVLSAAIKSLKR 222
                  788888889999965544222789********************86.777777666667899*********8776666666667777765444443.55666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1086.80
//
Query:       MMETSP1174-20130828|14385_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|14388_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 523.70
//
Query:       MMETSP1174-20130828|14387_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.57
# Mc/sec: 1128.73
//
Query:       MMETSP1174-20130828|14394_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1174-20130828|14391_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 1717.86
//
Query:       MMETSP1174-20130828|14395_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.1   1.3      0.017   12.2   0.2    1.4  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       0.3   1.2e+03     185     203 ..      39      57 ..      35      59 .. 0.38
   2 ?   12.2   0.2   4.1e-06     0.017     213     287 ..     108     182 ..     104     186 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.3
    TIGR00996 185 erdedigelidnlnrvldv 203
                  + ++ +++++d l + +++
  MMETSP1174-20130828|14395_1  39 DALPLVFKVVDDLDDATQA 57 
                  3334444444444333333 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.1e-06
    TIGR00996 213 rlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleqlLkllpt 287
                  rll+ l  + ++l  r + L++al+++++ + + +d  +   + ++  la+La  l+ll   +  l++lL++l t
  MMETSP1174-20130828|14395_1 108 RLLAVLTPTPETLVRRHALLRQALSRVGQGTWTSADRARVVGSAFPGLLAQLALGLELLTHTRTLLACLLEMLDT 182
                  67888889999************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 969.29
//
Query:       MMETSP1174-20130828|14399_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|14398_1  [L=1213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    5.0  18.1        1.6    4.1  12.5    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  12.5   0.00039       1.6     768     900 ..     771     853 ..     712     863 .. 0.43

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00039
    TIGR00927 768 aegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaee 900
                  + +  ++ + +                                                  e++e+  + G+ +e+  e  e+G e  +e+e++i  + ++e++ d de+    e+++e ++d+de  + a e
  MMETSP1174-20130828|14398_1 771 SSSSSSDDDSE--------------------------------------------------ESDESDSESGSSEEQSEEESESGSESSEESESDIGEESNAESHDDSDEASSYDESSSEYDDDDDEDSTAAAE 853
                  11111111111..................................................112222222333333333334444444444444444444444444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.17s 00:00:00.98 Elapsed: 00:00:00.82
# Mc/sec: 1952.47
//
Query:       MMETSP1174-20130828|14402_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.34
# Mc/sec: 124.23
//
Query:       MMETSP1174-20130828|14400_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.55    6.1   6.9       0.81    5.5   4.8    1.2  1  TIGR00930 2a30: K-Cl cotransporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.8    0.0002      0.81     794     879 ..     104     202 ..      93     214 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0002
    TIGR00930 794 dlakllsklRleaevivvlmdisakekkesveafeemlkklrlekeekereakdrklkeekpkkitdke.............lqsnkkklyrqvrLnev 879
                  d  kll+++ ++  +   +m++++ke++   +  +e l+k r  +e+ e++a + kl+ +++++i++++             ++++ ++l r  ++n v
  MMETSP1174-20130828|14400_1 104 DAEKLLTDIEIRKMDRDAVMELRQKEQELRRQSLKERLAKARAINERCEKNAMEAKLQAKEEMRIKEADriameearhadleKDKYDAELRRISHMNCV 202
                  66899***********************************************999***********999666655555555444444444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       368  (0.0897123); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 806.93
//
Query:       MMETSP1174-20130828|14405_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 667.94
//
Query:       MMETSP1174-20130828|14410_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.9   0.0    1.3e-05   21.5   0.0    1.1  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
    1.5e-05   21.1   0.0    1.6e-05   21.0   0.0    1.1  1  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
    4.2e-05   19.8   0.1    6.3e-05   19.2   0.0    1.2  1  TIGR01074 rep: ATP-dependent DNA helicase Rep
    4.8e-05   19.6   0.0    5.8e-05   19.4   0.0    1.1  1  TIGR01075 uvrD: DNA helicase II
     0.0016   14.2   0.1     0.0018   14.0   0.1    1.1  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.6e-08   1.3e-05     194     256 ..      42     103 ..      37     112 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.6e-08
    TIGR01073 194 eLfekvpdvleyyqrkfryilvDeyqDtnraqytlvrlLaersknlcvvGDaDqsiygfrgad 256
                  + f +v + l++ q + r + +De qD n  q +l  +  + +  +   GD  q+iygfrg+ 
  MMETSP1174-20130828|14410_1  42 NTFLHVLSPLSFAQDRIRQVSIDEAQDLNACQTDLFVRCQSDVTRI-LFGDRFQAIYGFRGSG 103
                  5566677778999*******************99865555544444.56***********974 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     2e-08   1.6e-05     371     418 ..      57     101 ..      23     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2e-08
    TIGR00609 371 qypivLIDEFQDtDpqQyrIFsklfiaqketaLfLIGDPKQaIYsFRg 418
                  + + v IDE+QD+++ Q   F +  +       +L GD  QaIY FRg
  MMETSP1174-20130828|14410_1  57 RIRQVSIDEAQDLNACQTDLFVRCQSDV---TRILFGDRFQAIYGFRG 101
                  445588***************9987666...56888***********9 PP

>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.7e-08   6.3e-05     204     257 ..      55     108 ..      51     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.7e-08
    TIGR01074 204 qkkiryllvdeyqdtntsqyelvkllvgerarftvvGdddqsiysWrGak.penl 257
                  q++ir + +de qd n++q  l     +++ +  + Gd  q+iy +rG+   +nl
  MMETSP1174-20130828|14410_1  55 QDRIRQVSIDEAQDLNACQTDLFVRC-QSDVTRILFGDRFQAIYGFRGSGgKDNL 108
                  89*****************9987444.344444578************8524566 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.1e-08   5.8e-05     205     254 ..      54     102 ..      41     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 7.1e-08
    TIGR01075 205 yrerfkeilvdefqdtnkiqya.wlrllagetgkvlivGdddqsiygwrGa 254
                   ++r +++ +de qd n+ q   ++r    ++ + ++ Gd  q+iyg+rG+
  MMETSP1174-20130828|14410_1  54 AQDRIRQVSIDEAQDLNACQTDlFVRC-Q-SDVTRILFGDRFQAIYGFRGS 102
                  589*****************8724554.3.34445678***********96 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.2e-06    0.0018     383     435 ..      52     100 ..      24     103 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-06
    TIGR02785 383 esyrekFeEvlvDEYQDtnlvQEsilqllkrgeeeegnlFmVGDvKQSIYrFR 435
                  ++ +++ + v +DE QD n+ Q  +    ++    + ++ + GD  Q IY FR
  MMETSP1174-20130828|14410_1  52 SFAQDRIRQVSIDEAQDLNACQTDLFVRCQS----DVTRILFGDRFQAIYGFR 100
                  56789999***************99876666....4788999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 430.70
//
Query:       MMETSP1174-20130828|14407_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-88  294.9   0.1    2.4e-88  294.7   0.1    1.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    1.1e-24   84.6   2.2    3.9e-20   69.6   0.1    2.2  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
      7e-14   48.4   0.1      1e-13   47.9   0.1    1.1  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    3.3e-13   46.1   1.2    4.2e-13   45.8   0.0    1.6  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    7.7e-12   42.6   0.2    1.5e-11   41.7   0.1    1.4  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
      1e-10   38.3   0.3    2.3e-10   37.1   0.0    1.6  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    2.3e-10   36.7   0.2    3.1e-10   36.2   0.1    1.1  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
      8e-10   36.0   0.4    1.3e-09   35.4   0.2    1.3  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      1e-09   35.0   0.1    1.7e-09   34.3   0.1    1.3  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    1.5e-08   30.8   0.1    2.1e-08   30.3   0.1    1.1  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    4.6e-08   29.4   0.1    6.7e-08   28.9   0.1    1.2  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    5.1e-08   28.8   0.1    7.8e-08   28.2   0.1    1.2  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.1e-06   24.9   0.2    1.8e-06   24.1   0.1    1.3  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.2e-05   22.0   0.1      2e-05   21.3   0.0    1.3  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    0.00096   16.6   0.1     0.0015   16.0   0.0    1.2  1  TIGR00338 serB: phosphoserine phosphatase SerB
     0.0015   15.9   0.2     0.0025   15.2   0.1    1.3  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
  ------ inclusion threshold ------
      0.014   13.3   0.0      0.022   12.7   0.0    1.3  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.029   11.8   0.1      0.049   11.0   0.0    1.3  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily


Domain annotation for each model (and alignments):
>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.7   0.1   1.1e-90   2.4e-88     752    1044 ..       2     391 ..       1     397 [. 0.95

  Alignments for each domain:
  == domain 1    score: 294.7 bits;  conditional E-value: 1.1e-90
    TIGR01657  752 ryslalsGkalavlleksk..ellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLsea.................................................................................................eAsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpssnllsvylllsvllqfvlvilslvllvfevkkqpwykeeevvelekenakslentvvfivslfqylivaivnskGkpfreplyknkpfvvsllvllaillvllleesselnellklvll 1044
                   +++l ++G a++vl  + +    l++l++ v VfARv+P+qKe ++++l k + ++lmcGDG+ND+gALkqA+vG+s++++                                                                                                 +As+a+pFtSk +s+ cV+ v+r+GR++Lvt++qvFk+lal++l++++ +++Lyl+g+k gd Q +t+ +++ia+++++ s+++pl kL+++rp+s+l+   + +s+l+qf++++ sl++        +  +    +  + ++ +++ n+ vf++s  ++l +++vn+ G+pf +pl++n  +   l v+ +++++l+l+ ++  +++l+lv+l
  MMETSP1174-20130828|14407_1    2 SHNLVVTGAAIQVLADDGEteAVLSQLCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSILNNpelekrveavmsmatnqngsgasstngqrssswgssllgkkasgaaavreaakqqldalndaegsssgksqhespkvesviaemveqerdpslvrfgDASIASPFTSKRTSVDCVLAVVRQGRCTLVTTIQVFKILALNCLVSAYMLSLLYLHGVKQGDTQ-MTVLGIVIAALFFFASQAPPLTKLAAKRPPSKLFTSSTAVSILGQFMVHLCSLLYALHLSTPYMRGH-DPLMVPDGDFRPNVLNSIVFLLSTWMQLNTFAVNYTGRPFTQPLRENGLLWRTLQVSWVAVMILALDLFPIGRDMLELVPL 391 
                   57899*********9876654899**************************************************************************************************************************************************************************************************************************.899999999*******************************************999877655555533.334679******************************************99999999999999******9999999999986 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   1.7e-22   3.9e-20     359     410 ..      28      79 ..      14      82 .. 0.94
   2 !   14.6   0.1   7.6e-06    0.0017     413     465 ..     182     234 ..     180     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 1.7e-22
    TIGR01494 359 iakelglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiai 410
                   + ++ +farvsP+qK+ i+++l k+g+v++m+GDG+ND++ALk+A+VG++i
  MMETSP1174-20130828|14407_1  28 LCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  577899*********************************************9 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 7.6e-06
    TIGR01494 413 kaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465
                  + a+ +   ++++ +v  ++++Gr+t++++++++++l++++l+ +++l++l++
  MMETSP1174-20130828|14407_1 182 SIASPFTSKRTSVDCVLAVVRQGRCTLVTTIQVFKILALNCLVSAYMLSLLYL 234
                  55677777888999**********************************99986 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   4.4e-16     1e-13     559     635 ..       6      87 ..       2      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 4.4e-16
    TIGR01524 559 vllGadieelsdee.....laaevekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiak 635
                  v++Ga i+ l+d+      l+++  + avfar++p qke i+++l+k+Gh+  + GdG nd  al++a vG+s+    ++ k
  MMETSP1174-20130828|14407_1   6 VVTGAAIQVLADDGeteavLSQLCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSILNNPELEK 87 
                  78999999999974222336777889***********************************************977666655 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.8e-15   4.2e-13     556     612 ..      23      79 ..       8      88 .. 0.92
   2 ?   -2.4   0.1      0.68   1.6e+02     754     813 ..     237     295 ..     200     301 .. 0.63

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.8e-15
    TIGR01522 556 qqlsevvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvam 612
                    ls++ ++vavfar sp++k  i+kal+k G v  m GdG nd  alk a +Gv++
  MMETSP1174-20130828|14407_1  23 AVLSQLCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  568999*************************************************96 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.68
    TIGR01522 754 vtardttmtftcfvffdmfn.alacrsetksvfeiGlfsnkmflyavgasllGqllvvyvp 813
                  v++ dt mt    v   +f  a  +   tk  +       k+f+ + + s+lGq +v   +
  MMETSP1174-20130828|14407_1 237 VKQGDTQMTVLGIVIAALFFfASQAPPLTK--LAAKRPPSKLFTSSTAVSILGQFMVHLCS 295
                  555566666666666555530222222233..22333457889999999999998886655 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   6.8e-14   1.5e-11     417     477 ..      21      80 ..      12      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 6.8e-14
    TIGR01525 417 aeavAkelgiidevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamg 477
                  +eav ++l     v+a ++P++K  ++k+l+ + g++++m+GDG ND  AL++A+vG+++ 
  MMETSP1174-20130828|14407_1  21 TEAVLSQLCPRVAVFARVSPHQKELIIKALN-KAGHVTLMCGDGTNDVGALKQAHVGVSIL 80 
                  56667777665689****************9.45568*********************986 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     1e-12   2.3e-10     504     559 ..      24      79 ..       4      87 .. 0.87
   2 ?   -2.2   0.0      0.78   1.8e+02     667     752 ..     283     373 ..     265     375 .. 0.75

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1e-12
    TIGR01647 504 eleelvekadGFAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAv 559
                   l++l  ++  FA v P  k  i++al+k+gh++ m GDG nD+ aLk+A vG+ +
  MMETSP1174-20130828|14407_1  24 VLSQLCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  56777888999******************************************987 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.78
    TIGR01647 667 aivlglilvvstllllalaldtsffedkvllelkkee.....lqsllylkvsisgqllifvtRtkgfsfver.pgkllliavviaqivatli 752
                   ++lg ++v    ll+al l t + + +  l + +++     l+s+++l +s   ql  f++   g+ f++    + ll+ ++ ++ va +i
  MMETSP1174-20130828|14407_1 283 VSILGQFMVHLCSLLYALHLSTPYMRGHDPLMVPDGDfrpnvLNSIVFL-LSTWMQLNTFAVNYTGRPFTQPlRENGLLWRTLQVSWVAVMI 373
                  4578888898888999999999999999999998888888889999998.667777777888777878877656666666666666666665 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.4e-12   3.1e-10     716     794 ..       3      79 ..       1      92 [. 0.83

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.4e-12
    TIGR01652 716 lalviDGksLklaLkee.lekeflelalkckavlcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGi 794
                  + lv+ G +++++ ++   e ++ +l+ ++ a +  RvsP+qK  ++k + k   +vtl  gdG+NDV+ +++A+vGv i
  MMETSP1174-20130828|14407_1   3 HNLVVTGAAIQVLADDGeTEAVLSQLCPRV-A-VFARVSPHQKELIIKALNKA-GHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  679999999987666542666666777655.3.567***********999876.79**********************98 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.2   5.5e-12   1.3e-09     395     461 ..      21      87 ..       3     103 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 5.5e-12
    TIGR01511 395 nekaakavAkelgievlaevlPedKaakvkelqe..kkvamvGDGiNDapaLaaadvgiaigagtdvai 461
                   e + +++  +++  v+a v+P++K+  +k+l++  ++ +m+GDG+ND  aL +a+vg++i +  ++ +
  MMETSP1174-20130828|14407_1  21 TEAVLSQLCPRVA--VFARVSPHQKELIIKALNKagHVTLMCGDGTNDVGALKQAHVGVSILNNPELEK 87 
                  3333444455555..7****************98335899********************988776655 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   7.4e-12   1.7e-09     600     651 ..      27      79 ..      11      96 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 7.4e-12
    TIGR01517 600 kilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfam 651
                  ++ p++ v+aR sP  k+l+++ l+k g+v  + GDGtnD  aLk+a vG+++
  MMETSP1174-20130828|14407_1  27 QLCPRVAVFARVSPHQKELIIKaLNKAGHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  6789***************9975899************************986 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   9.2e-11   2.1e-08     638     708 ..       6      79 ..       2      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 9.2e-11
    TIGR01106 638 vvhgsdlkdltse.qldeilkeh..teivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvam 708
                  vv+g+ ++ l ++ + + +l +      vfar sp qk +i+++ ++ g +  + gdg nd  alk+a +gv++
  MMETSP1174-20130828|14407_1   6 VVTGAAIQVLADDgETEAVLSQLcpRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSI 79 
                  77777777776552444455544213569******************************************975 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1     3e-10   6.7e-08     522     576 ..      32      87 ..      17     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3e-10
    TIGR01116 522 alvfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamGsGtevak 576
                    vf+rv P++k  +++ l++ ++++ m GdG nd  alk+a++G+++    e+ k
  MMETSP1174-20130828|14407_1  32 VAVFARVSPHQKELIIKaLNKAGHVTLMCGDGTNDVGALKQAHVGVSILNNPELEK 87 
                  569**********999846899************************9877666666 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   3.4e-10   7.8e-08     647     719 ..       5      82 ..       2     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.4e-10
    TIGR01523 647 mvmtgsqfdalsee.evdd.lkvlp...lviarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgin 719
                  +v+tg+ ++ l+++ e +  l  l+    v ar +p  k  +i+al +  + + m gdg nd  +lkqa vg+++  n
  MMETSP1174-20130828|14407_1   5 LVVTGAAIQVLADDgETEAvLSQLCprvAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSILNN 82 
                  7899999999987523332256666443699******************************************98655 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1     8e-09   1.8e-06     469     534 ..      15      80 ..       7      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 8e-09
    TIGR01497 469 tGdnrltaaviakeaGvddfiaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamn 534
                    d+  t av+++       +a + p +k  +ik  ++ G++  m GdGtnd  al qa+vgv++ 
  MMETSP1174-20130828|14407_1  15 LADDGETEAVLSQLCPRVAVFARVSPHQKELIIKALNKAGHVTLMCGDGTNDVGALKQAHVGVSIL 80 
                  55666677777777777778899****************************************864 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.9e-08     2e-05     366     408 ..      33      79 ..      12      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 8.9e-08
    TIGR01512 366 evhaellPedKveivkelke....vamvGDGiNDapaLaaAdvgiam 408
                   v a ++P +K  i+k+l++    ++m GDG ND  aL++A+vg+++
  MMETSP1174-20130828|14407_1  33 AVFARVSPHQKELIIKALNKaghvTLMCGDGTNDVGALKQAHVGVSI 79 
                  47899*******99999987444468*******************97 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.8e-06    0.0015     163     207 ..      49      93 ..      33      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.8e-06
    TIGR00338 163 kegislektvavGDGanDlsmikaAglgiafnakpvlkekadivi 207
                    +   + t++ GDG+nD+ ++k+A++g++   +p l+++ ++v+
  MMETSP1174-20130828|14407_1  49 ALNKAGHVTLMCGDGTNDVGALKQAHVGVSILNNPELEKRVEAVM 93 
                  4555556789*************************9999988776 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-05    0.0025     198     241 ..      48      91 ..      43     104 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-05
    TIGR00099 198 eklgislenviaiGDseNDieMleaagvgvamgnaneelkalad 241
                  ++l+ +   + ++GD+ ND+  l+ a vgv+  n +e  k +  
  MMETSP1174-20130828|14407_1  48 KALNKAGHVTLMCGDGTNDVGALKQAHVGVSILNNPELEKRVEA 91 
                  56666667799********************9998765444433 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.5e-05     0.022     165     220 ..      29      78 ..       4      79 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.5e-05
    TIGR01484 165 qkegetllevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglava 220
                  ++  + +  v p  ++K+ +++al++  +     +l +GD++ND+ +l++a+++v+
  MMETSP1174-20130828|14407_1  29 CPRVAVFARVSP--HQKELIIKALNKAGH----VTLMCGDGTNDVGALKQAHVGVS 78 
                  555555555556..899999999999999....9******************9986 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022     0.049     168     212 ..      57     103 ..      46     109 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00022
    TIGR01482 168 ilviGDSeNDidlFevavfkvavanAqeelkewadlvt..eskygeg 212
                  +l++GD+ ND+++ + a ++v + n +e  k++  +++   +++g g
  MMETSP1174-20130828|14407_1  57 TLMCGDGTNDVGALKQAHVGVSILNNPELEKRVEAVMSmaTNQNGSG 103
                  89**********************97765444444333333445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.63
# Mc/sec: 884.12
//
Query:       MMETSP1174-20130828|14406_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    9.6   8.8        0.4    8.4   0.2    3.7  4  TIGR02869 spore_SleB: spore cortex-lytic enzyme


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   9.7e-05       0.4     157     187 ..       7      37 ..       2      43 .. 0.87
   2 ?    2.8   0.2     0.005        21     160     185 ..      54      79 ..      42      82 .. 0.79
   3 ?    1.5   0.1     0.012        51     166     188 ..     108     128 ..      97     133 .. 0.83
   4 ?   -2.6   0.0      0.23   9.3e+02     151     179 ..     624     652 ..     618     655 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 9.7e-05
    TIGR02869 157 avldainGwdPsggalyyfnpakatssWiws 187
                     d ++ +dPs g  yy n ++   sW w 
  MMETSP1174-20130828|14406_1   7 IGGDWVENIDPSSGRAYYANLKTQETSWTWP 37 
                  55688999*********************96 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.005
    TIGR02869 160 dainGwdPsggalyyfnpakatssWi 185
                  d  + +d + g  yyfn ++   sW 
  MMETSP1174-20130828|14406_1  54 DWNERVDEASGRTYYFNKTTQETSWT 79 
                  4455679999**********999995 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.012
    TIGR02869 166 dPsggalyyfnpakatssWiwsr 188
                  dPs g  yy n  +   +W  +r
  MMETSP1174-20130828|14406_1 108 DPSSGHTYYSNVVTMETTW--TR 128
                  9**********99888877..44 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 0.23
    TIGR02869 151 eeeakkavldainGwdPsggalyyfnpak 179
                  ++ea+ + ld ++ w   g++ yy  p++
  MMETSP1174-20130828|14406_1 624 QQEARLSYLDVVKSWKIYGSSYYYVEPQN 652
                  677888889******99999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.55
# Mc/sec: 1792.65
//
Query:       MMETSP1174-20130828|14411_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.8   0.0    0.00022   19.2   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
  ------ inclusion threshold ------
      0.013   12.2   0.0       0.02   11.6   0.0    1.2  1  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.1e-07   0.00022      53     115 ..      95     157 ..      38     159 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.1e-07
    TIGR01575  53 ldeaeilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkei 115
                   + a++ ++ v++  q++GiG++L+++ +k + + g+++i ++V    +  ++ ++  gf e 
  MMETSP1174-20130828|14411_1  95 GKVAKLQALSVEKSRQNMGIGSHLIRRCEKISSGYGCRSICIDVSMQRQDLRRWFQTRGFSES 157
                  345778899************************************999999999999999875 PP

>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.9e-06      0.02     342     404 ..      92     158 ..      61     167 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.9e-06
    TIGR01890 342 yaeeevgelaclavsPeardggrGerllkhiedrarqvGlkrlfv.lttrt...ehWfrerGfaeas 404
                   a  +v+ l  l+v+   ++ g G +l+++ e+ + + G + + + ++ +     +Wf+ rGf+e++
  MMETSP1174-20130828|14411_1  92 AATGKVAKLQALSVEKSRQNMGIGSHLIRRCEKISSGYGCRSICIdVSMQRqdlRRWFQTRGFSESG 158
                  455677888899*****************************998623333212268*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1010.98
//
Query:       MMETSP1174-20130828|14413_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|14416_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 724.16
//
Query:       MMETSP1174-20130828|14422_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.68
# Mc/sec: 430.91
//
Query:       MMETSP1174-20130828|14418_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   15.0   0.3       0.11   10.1   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   2.7e-05      0.11       4      27 ..      20      43 ..      17      57 .. 0.86
   2 !    2.4   0.1    0.0065        27      35     126 ..     119     217 ..     102     232 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.7e-05
    TIGR00231  4 ikivivGhvdvGKstLlnsllknk 27
                  +iv++G  ++GKs+ l+++ +++
  MMETSP1174-20130828|14418_1 20 PQIVVIGAQSSGKSSVLENIVGRT 43
                 68******************9988 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0065
    TIGR00231  35 pgvtrdyvteqieedGktykvnllDTaG......qedfdairrlyvreverslevvdivilvldv..eeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                  +g++r+ +  +i+       ++l+DT+G       ++   i+++   +v++++   + +il +++  +++ +++  ++++ea+ +g  ++ v++K Dl d
  MMETSP1174-20130828|14418_1 119 KGISRKPINLKITSTK-VLDLTLVDTPGmtkvcvGDQPIDIEDQIRGMVTSFVANPNAIILAVTAgnQDIANSDALKLAREADPEGDRTVGVLTKLDLMD 217
                  4666666666555554.35899******654444222234555555555555555554444333322455556666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:01.07
# Mc/sec: 874.58
//
Query:       MMETSP1174-20130828|14426_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.86
# Mc/sec: 96.69
//
Query:       MMETSP1174-20130828|14424_1  [L=926]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-44  149.9  41.4    1.7e-26   90.6  10.7    2.9  3  TIGR00833 actII: transport protein
    6.1e-32  108.3  22.2      7e-22   75.1   2.1    3.0  3  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
    6.6e-07   25.5  14.1    6.6e-07   25.5   9.7    2.8  2  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.031        42     393     426 ..       6      40 ..       2      60 .. 0.80
   2 !   64.0  11.7   1.3e-21   1.8e-18     157     329 ..     148     318 ..     144     326 .. 0.93
   3 !   90.6  10.7   1.2e-29   1.7e-26     734     899 ..     622     800 ..     610     804 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.031
    TIGR00833 393 ptkvesvkgyealdrhFpa.nalepvvvliksdrD 426
                  p + +sv++   l+ hFp+ ++   +++l + +++
  MMETSP1174-20130828|14424_1   6 PDSSPSVEATDKLNEHFPQfKNTLSMQLLLRNPHE 40 
                  8899**************94446789999999886 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 1.3e-21
    TIGR00833 157 vtGplatiadllesldkdvrritattvvvvliiLllvYrslitmlvpLvsvgvsvvvakgivslLaetgligvsaqavvlltalvigagtdYavfligRYheerrkgekkeeAlaealrevgkailgsaltvavaflaLslarlesfktlgvalavgvlvallaaltllPAll 329
                  vtG l  +  ++  +++d +++  + + + l+iL lv ++l +++vp+++v++ +     i++  a + ++   +++  ++ +l i++ +dY++fl +R+ ee +kg++ e+A++ +l ++g+ il s+ t +  fl +++  + +++ +g+  +  +lval + l l PA+l
  MMETSP1174-20130828|14424_1 148 VTGILPFANAITSGVSEDLHLMDTVILPIALVILGLVVQNLALLIVPIMTVVLTILGEFLIMYPVALRMDV--VTFTPSIMMSLTIAMSIDYSLFLLSRFMEEIKKGRSVEQAIELMLDGAGHTILVSGSTLILCFLGMLFFPMVMLQSVGIGASATLLVALSVNLSLIPAVL 318
                  677777777777778888888888888899*************************9999999999999888..789999999*****************************************************************************************98 PP

  == domain 3    score: 90.6 bits;  conditional E-value: 1.2e-29
    TIGR00833 734 vlrdlrdlvnsdlgliviitlvivflilvillRalvapivligsvllsylaalGlsvlvfqh..........ilg.aelhwsvlalsfvllvavGsdYnlllvsRikeEspaGl..rtgviralgstGkvitaagLvfagtmlaLvaasllaiaqvGvtvgvGilldtlivrsvlvpaL 899
                   l+d  ++v     +i+ itl +vf+ +++ +R+lva++  + ++ l +   +Gl+vlv+qh          +++  ++ w+++ + f+++v++G dY+++l+ R+ e   +G   r ++i+++ stG +itaag+++a ++ +L ++s  ++ q+ + +   +lldt++vr++ vpaL
  MMETSP1174-20130828|14424_1 622 TLYDASNAVYDMFPVIIAITLGVVFVFMALAFRSLVAAVRSVVTLSLTLSFVFGLAVLVYQHgafewvglrcVSNtGQMCWLTPVMCFSIIVGLGLDYDVFLIARVYEYRSEGYtdRAAAIKGIYSTGYIITAAGVIMAISFGGLFTSSEIILNQAAFLLVFAVLLDTFVVRTLCVPAL 800
                  566666777666778999*******************************************977776666655665689*********************************965599************************************************************9 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   2.1   5.1e-25     7e-22     175     447 ..     147     471 ..     102     479 .. 0.79
   2 !    3.3   0.3    0.0025       3.5     156     236 ..     597     676 ..     537     691 .. 0.77
   3 !   33.1   9.7   2.4e-12   3.3e-09     594     732 ..     644     802 ..     637     803 .. 0.72

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 5.1e-25
    TIGR00921 175 tlTGspalsydierelgkdlgvvlaisgilvvlvLllvfksvvrkllpLvivlfgVvvvlGlmglLGiPlsaatlaalpll...iGlgIdYgiqltnRyeEErdkgkakeeAvveavkrtgkAvliallttvlGFlalllsvlpmlkelgvllvlGlilaylltllvlpallklideirrkvmkkk..k..............................................akdlereeiagekseiekalskvskltvrhpvvilvvali...ivglglYaaakiklevnlekfipqdlpslqalkeleslmggsgdevtil 447
                   +TG +     i +++ +dl  + ++   +  ++L lv ++    ++p++ v+++++  + +m+     ++++t +   ++   i ++IdY+ +l+ R+ EE++kg+++e+A++  +  +g+ +l+++ t +l Fl +l   + ml+ +g++ ++ l++a    l + pa+l++       v ++   +                                              + d +      + ++++ + +  +     +p ++++v+++    ++   Y   ++++ + ++   p+d  ++  ++++ +l g    + ++l
  MMETSP1174-20130828|14424_1 147 GVTGILPFANAITSGVSEDLHLMDTVILPIALVILGLVVQNLALLIVPIMTVVLTILGEFLIMYPVALRMDVVTFTPSIMMsltIAMSIDYSLFLLSRFMEEIKKGRSVEQAIELMLDGAGHTILVSGSTLILCFLGMLFFPMVMLQSVGIGASATLLVALSVNLSLIPAVLYSCGAHL--VACQVwlDgvvarcvckkdpqirqqtwltsidadvggqgletplnhpgdnasesSSDDDALRDDVGDAAMSTSWWYKGAWELVNPKTAIIVIILataLCTPICYYCLDVETSISFDLTAPEDSEAMDVFDDMANLYGQGTVFPYTL 471
                  58999999999*********9988887777788888999999999****************************998776665559****************************************************************************************987766..66665434777777777778888888888888888888888888776666554422222222222567777777777777776666555443330003444567777888888888888888888888888877776555555555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0025
    TIGR00921 156 indveralertnfpsglkltlTGspalsydierelgkdlgvvlaisgilvvlvLllvfksvvrkllpLvivlfgVvvvlGl 236
                  + d ++ l+ ++ p+g    l  + +  yd  + +   + v++ai+  +v + + l f+s v+ +   v + ++  +v+Gl
  MMETSP1174-20130828|14424_1 597 LADARKFLD-DDGPEGWSFYLAQGAGTLYDASNAVYDMFPVIIAITLGVVFVFMALAFRSLVAAVRSVVTLSLTLSFVFGL 676
                  556666655.56788999999999999999999999999999999999999999999**9999988888888888888887 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 2.4e-12
    TIGR00921 594 vliv.llvvyRdivkavvpliailsvilwaigllg............lagipsslil.....aalvslilGlGvdysihlleRyfEErke.lspkeaiiralertGkailvsalTtagGFlaLllsqlpiirnfGlvavvgvll.sllvalvvfPallv 732
                  v+ v +  ++R+ v av  ++ + +      gl              l+ +  +  +         s+i+GlG+dy ++l+ R +E r e +  + a i+ + +tG  i+++++ +a+ F+ L++s   i+++  +++v +vll +++v  + +Pall 
  MMETSP1174-20130828|14424_1 644 VVFVfMALAFRSLVAAVRSVVTLSLTLSFVFGLAVlvyqhgafewvgLRCVSNTGQMcwltpVMCFSIIVGLGLDYDVFLIARVYEYRSEgYTDRAAAIKGIYSTGYIITAAGVIMAISFGGLFTSSEIILNQAAFLLVFAVLLdTFVVRTLCVPALLG 802
                  4433034578888888887777655443332221111223333444466665543331111144579***********************9***************************************************983455567889**985 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   9.7   4.8e-10   6.6e-07     249     421 ..     144     319 ..     129     327 .. 0.83
   2 ?   -0.7  11.8     0.039        53     275     383 ..     638     763 ..     625     811 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.8e-10
    TIGR03480 249 vkvrlTGevaLsdeelatvsegvkvagllslvlvlvlLllalrslrlvlavlvtlivgLi....ltaafaa.lavGslnliSvaFavlfiGlgvdfaiqfslryreelergeeeeeAlseaakevgaalllaalatAigffaFlpTdykGvseLGlIagvgmliallvtltllpAlLk 421
                  ++ ++TG  + ++   + vse++++   + l + lv+L l ++ l l++  ++t+++ ++    +   +a+ + v +++      + l i +++d++  +  r+ ee+++g++ e+A++  +  +g+ +l+  ++  + f+  l+     +   G+ a + +l+al v+l+l+pA+L 
  MMETSP1174-20130828|14424_1 144 IDHGVTGILPFANAITSGVSEDLHLMDTVILPIALVILGLVVQNLALLIVPIMTVVLTILgeflIMYPVALrMDVVTFT--PSIMMSLTIAMSIDYSLFLLSRFMEEIKKGRSVEQAIELMLDGAGHTILVSGSTLILCFLGMLFFPMVMLQSVGIGASATLLVALSVNLSLIPAVLY 319
                  67889*************************************9999876666665555431110444444312233333..33345688***************************************************************************************95 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.039
    TIGR03480 275 gllslvlvlvlLllalrslrlvlavlvtlivgLiltaafaalavGs.......lnliS...........vaFavlfiGlgvdfaiqfslryreelergeeeeeAlseaakevgaalllaalatAigf 383
                   +++l +v v+++la+rsl   +  +vtl + L + +++a+l+  +       l  +S           + F++  +Glg d+ + +  r  e + +g   ++A  +++ ++g  ++ a + +Ai+f
  MMETSP1174-20130828|14424_1 638 IAITLGVVFVFMALAFRSLVAAVRSVVTLSLTLSFVFGLAVLVYQHgafewvgLRCVSntgqmcwltpvMCFSI-IVGLGLDYDVFLIARVYEYRSEGYTDRAAAIKGIYSTGYIITAAGVIMAISF 763
                  5789999***********99999999*******99999999874322222222333333333333334345655.59************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.69
# Mc/sec: 1771.33
//
Query:       MMETSP1174-20130828|14428_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|14430_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|14431_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 517.80
//
Query:       MMETSP1174-20130828|14433_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 342.66
//
Query:       MMETSP1174-20130828|14429_1  [L=980]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 2120.48
//
Query:       MMETSP1174-20130828|14435_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 172.60
//
Query:       MMETSP1174-20130828|14436_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.86
# Mc/sec: 778.12
//
Query:       MMETSP1174-20130828|14444_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   71.2   0.0    2.3e-20   71.1   0.0    1.0  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
      9e-13   46.1   0.0    1.2e-12   45.7   0.0    1.2  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
    5.8e-12   44.0   0.0    8.4e-12   43.4   0.0    1.2  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    2.3e-09   35.3   0.0    3.1e-09   34.8   0.0    1.2  1  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    6.3e-06   23.7   0.0    8.7e-06   23.3   0.0    1.2  1  TIGR01485 SPP_plant-cyano: sucrose phosphatase
    0.00017   18.8   0.0    0.00023   18.4   0.0    1.2  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
    0.00048   17.6   0.0    0.00078   16.9   0.0    1.3  1  TIGR00338 serB: phosphoserine phosphatase SerB
    0.00065   17.4   0.0     0.0014   16.3   0.0    1.5  2  TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
     0.0019   16.0   0.0     0.0026   15.6   0.0    1.2  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
     0.0042   15.0   0.0     0.0061   14.5   0.0    1.3  1  TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
      0.008   13.9   0.0      0.011   13.5   0.0    1.2  1  TIGR00685 T6PP: trehalose-phosphatase
  ------ inclusion threshold ------
       0.01   13.2   0.0      0.016   12.5   0.0    1.3  1  TIGR02471 sucr_syn_bact_C: sucrose phosphate synthase, sucrose phosphatase-like domain
      0.025   12.1   0.0      0.037   11.5   0.0    1.2  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal


Domain annotation for each model (and alignments):
>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   7.3e-23   2.3e-20      91     238 ..       5     150 ..       1     151 [] 0.92

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 7.3e-23
    TIGR00099  91 ilkklgldvilysddsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkkeeleeelsvvsssedsieitakgvsKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnaneelka 238
                  ++k++g+++++ys+d++ +++++  + e ++++   ++k+v+      +  +++llll ++ +l++ +  +    + +e s++   ++++e++++g+sKg+++++l+ +lg+ +  +ia GD+eND  Mle++gvg+am    + +ka
  MMETSP1174-20130828|14444_1   5 YAKSEGYSLVAYSGDTLLTTQADYRTNELHDRYMEPSPKIVTSL-AGHSAPVNKLLLLGDPRRLEESRSDVG-VLVGKEASLTVAMPQMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAMVRNRDMIKA 150
                  567777****************9888888877777777777777.999************************.889999999*********************************************************999888886 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.9e-15   1.2e-12     139     197 ..      90     148 ..      70     150 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 3.9e-15
    TIGR01482 139 kdldilpkgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkvavanAqeel 197
                  + l++lp+g +KG++v +l+ +lg+ p  ++++GD eND ++ e++++++a+    + +
  MMETSP1174-20130828|14444_1  90 QMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAMVRNRDMI 148
                  5689*********************************************9876666655 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.7e-14   8.4e-12     163     221 .]      83     141 ..      64     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.7e-14
    TIGR01484 163 alqkegetllevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglavav 221
                  +l+    + levlp g++Kg+++++ll +l++    ++a+GD++ND  mle++g+++a+
  MMETSP1174-20130828|14444_1  83 SLTVAMPQMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAM 141
                  566678899***********************************************998 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   9.8e-12   3.1e-09     139     196 ..      92     149 ..      75     151 .] 0.92

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 9.8e-12
    TIGR01487 139 vhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelK 196
                  + +l++g +Kg gv kl+  lG+++   +a+GD+enD  + +++g ++a+    d +K
  MMETSP1174-20130828|14444_1  92 LEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAMVRNRDMIK 149
                  568899********************************************99999998 PP

>> TIGR01485  SPP_plant-cyano: sucrose phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.8e-08   8.7e-06     155     211 ..      88     144 ..      66     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.8e-08
    TIGR01485 155 sGkdldilPqgadkgqalqylleklkiepsqtlvCGdsGndielfeisdvrGvivsn 211
                    + l++lP g+ kgq ++ ll +l + p  t+  Gd+ nd +++e+ +v   +v+n
  MMETSP1174-20130828|14444_1  88 MPQMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAMVRN 144
                  557899*****************************************9998889998 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.3e-07   0.00023     167     226 ..      90     147 ..      68     150 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.3e-07
    TIGR01486 167 rfyhvlgaesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgkdge 226
                   +  vl  + +KG+ v +l+  +  +     +++lGD  nD  +le v + +   ++++ 
  MMETSP1174-20130828|14444_1  90 QMLEVLPPGCSKGQGVSKLLSHLGVR--PGATIALGDAENDTGMLEMVGVGIAMVRNRDM 147
                  5777888899************9998..6789****************999888777765 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.5e-06   0.00078     152     193 ..     100     141 ..      95     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.5e-06
    TIGR00338 152 akaktllkllekegislektvavGDGanDlsmikaAglgiaf 193
                  +k++ + kll + g+ + +t+a+GD  nD  m++  g+gia 
  MMETSP1174-20130828|14444_1 100 SKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAM 141
                  59999***********************************96 PP

>> TIGR02463  MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   5.3e+02     177     195 ..      28      46 ..      22      63 .. 0.68
   2 !   16.3   0.0   4.3e-06    0.0014     164     212 ..      90     138 ..      65     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.7
    TIGR02463 177 kavnalkkalnekdvkvlg 195
                    +n+l +++ e+ +k+++
  MMETSP1174-20130828|14444_1  28 YRTNELHDRYMEPSPKIVT 46 
                  5567788888888777764 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 4.3e-06
    TIGR02463 164 RlsHllgaeaskgkavnalkkalnekdvkvlgLGDspnDlpLLevaDla 212
                   +  +l    skg+ v +l ++l  +   +++LGD++nD  +Le++ + 
  MMETSP1174-20130828|14444_1  90 QMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVG 138
                  588999999**********************************998765 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.2e-06    0.0026     136     177 .]      94     135 ..      68     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.2e-06
    TIGR01488 136 vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllklv 177
                  v p g++Kg+ +++ll+  +   + +ia+GD +nD+ +l++v
  MMETSP1174-20130828|14444_1  94 VLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMV 135
                  78889****************9999**************986 PP

>> TIGR02461  osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05    0.0061     167     223 ..      84     138 ..      67     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-05
    TIGR02461 167 levtaggrfyevvggsdKGkAikvllelyklrlgaivtvglGDsenDlplleavdla 223
                  l+v +     +   g  KG+ +  ll     r+ga  t++lGD+enD  +le+v   
  MMETSP1174-20130828|14444_1  84 LTVAMPQMLEVLPPGCSKGQGVSKLLSHLGVRPGA--TIALGDAENDTGMLEMVGVG 138
                  55555544444445889******999998887776..789************99765 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.4e-05     0.011     160     208 ..      91     135 ..      71     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.4e-05
    TIGR00685 160 vvElkPrdvnKGeivkklleeadvsgisakdvvvyLGDDlTDedaFrvv 208
                  ++E+ P++++KG+ v kll +  v++ +    ++ LGD   D  + + v
  MMETSP1174-20130828|14444_1  91 MLEVLPPGCSKGQGVSKLLSHLGVRPGA----TIALGDAENDTGMLEMV 135
                  57***********************954....5*****99999888776 PP

>> TIGR02471  sucr_syn_bact_C: sucrose phosphate synthase, sucrose phosphatase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05     0.016     140     198 ..      81     139 ..      75     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.1e-05
    TIGR02471 140 avkvilsleafLdvlPlraskelalrylslrwglpleqlLvagdsgndeellrGdtlgv 198
                  ++ + + + ++L+vlP   sk++ +  l  ++g+ +   +  gd++nd ++l+    g+
  MMETSP1174-20130828|14444_1  81 EASLTVAMPQMLEVLPPGCSKGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGI 139
                  5667788899*****************************************97554444 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012     0.037     148     189 ..     101     142 ..      91     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
    TIGR01491 148 kgiavkrlkseLnaskeetvavGDskedasifevadlaialg 189
                  kg+ v +l s L++    t+a+GD  +d+ ++e++++ ia+ 
  MMETSP1174-20130828|14444_1 101 KGQGVSKLLSHLGVRPGATIALGDAENDTGMLEMVGVGIAMV 142
                  78899*******************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1174-20130828|14446_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|14447_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-11   40.5   5.0      0.075   11.1   0.1    7.3  8  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.023        94       2      18 ..      93     109 ..      92     113 .. 0.89
   2 ?   -0.9   0.0      0.12     5e+02      11      25 ..     141     155 ..     138     158 .. 0.85
   3 ?   -3.2   0.0      0.66   2.7e+03       6      27 ..     196     217 ..     193     219 .. 0.68
   4 !   11.0   0.0   1.9e-05     0.079       2      27 ..     240     265 ..     239     269 .. 0.87
   5 !    4.6   0.0    0.0022       8.9       8      26 ..     284     302 ..     281     305 .. 0.86
   6 ?    2.1   0.0     0.013        55       8      28 ..     316     336 ..     310     337 .. 0.85
   7 !    3.9   0.0    0.0036        15       8      33 ..     443     468 ..     436     470 .. 0.84
   8 !   11.1   0.1   1.8e-05     0.075       2      28 ..     472     498 ..     471     501 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.023
    TIGR00756   2 tyntlisglckagrvee 18 
                  ++n+ + ++ck  ++++
  MMETSP1174-20130828|14447_1  93 AFNAAMLACCKGEQWHK 109
                  689999******99987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.12
    TIGR00756  11 ckagrveeAlelfde 25 
                  +k g++  Al+++++
  MMETSP1174-20130828|14447_1 141 AKTGHPTRALQMLKK 155
                  799*********986 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 0.66
    TIGR00756   6 lisglckagrveeAlelfdeMk 27 
                  ++ ++++++  + +le++ +M 
  MMETSP1174-20130828|14447_1 196 VLVAYAEQRACKRVLEVLGLMT 217
                  5566776666677888888885 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 1.9e-05
    TIGR00756   2 tyntlisglckagrveeAlelfdeMk 27 
                  +y + i +++  g++ eA+e++d+ +
  MMETSP1174-20130828|14447_1 240 IYIIAIACCVSTGHYAEAVEVYDQRL 265
                  68899*****************9855 PP

  == domain 5    score: 4.6 bits;  conditional E-value: 0.0022
    TIGR00756   8 sglckagrveeAlelfdeM 26 
                  +++++ g++  A++l++ +
  MMETSP1174-20130828|14447_1 284 KAYAQTGQWQTAMDLLKGL 302
                  79*************9865 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.013
    TIGR00756   8 sglckagrveeAlelfdeMke 28 
                   ++c+ag+ + Al+ ++ M++
  MMETSP1174-20130828|14447_1 316 AACCRAGECKPALKTLKAMRR 336
                  69******9999999999986 PP

  == domain 7    score: 3.9 bits;  conditional E-value: 0.0036
    TIGR00756   8 sglckagrveeAlelfdeMkergivP 33 
                    + +a r +eA+e+ ++ +++++v 
  MMETSP1174-20130828|14447_1 443 QTCRRAQRHREAVEVVRLVEDSDVVM 468
                  67899*************99999986 PP

  == domain 8    score: 11.1 bits;  conditional E-value: 1.8e-05
    TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                  +y++++  l +a r  +Ale+ +eM++
  MMETSP1174-20130828|14447_1 472 MYTMVLGVLERAHRSAKALEVIEEMMA 498
                  7************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.59
# Mc/sec: 1201.32
//
Query:       MMETSP1174-20130828|14448_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.9   0.1      0.043   11.2   0.1    1.3  1  TIGR03969 mycofactocin: mycofactocin precursor


Domain annotation for each model (and alignments):
>> TIGR03969  mycofactocin: mycofactocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.1e-05     0.043       6      15 ..     155     164 ..     153     165 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
    TIGR03969   6 VeEtLvEEVS 15 
                  V+EtLvE VS
  MMETSP1174-20130828|14448_1 155 VDETLVEDVS 164
                  9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 701.80
//
Query:       MMETSP1174-20130828|14450_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.51
# Mc/sec: 163.05
//
Query:       MMETSP1174-20130828|14451_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|14454_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1174-20130828|14456_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|14453_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.53
# Mc/sec: 779.48
//
Query:       MMETSP1174-20130828|14460_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 518.53
//
Query:       MMETSP1174-20130828|14457_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.54
# Mc/sec: 1400.55
//
Query:       MMETSP1174-20130828|14461_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.0   0.0      0.048   11.3   0.0    1.2  1  TIGR02570 cas_GSU0053: CRISPR-associated protein GSU0053/csb1, Dpsyc system


Domain annotation for each model (and alignments):
>> TIGR02570  cas_GSU0053: CRISPR-associated protein GSU0053/csb1, Dpsyc system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05     0.048      10      49 ..     185     225 ..     179     232 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
    TIGR02570  10 kslegadvtlfaatfaqgG.deivalfkgakgkkavlidsv 49 
                   ++++   ++  +tfa gG d  v++ +g ++k+ ++  s 
  MMETSP1174-20130828|14461_1 185 FPVNAIAFHPIHGTFATGGcDGYVNVWDGRNKKRLCQLPSY 225
                  58999999****************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1174-20130828|14464_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   17.0   0.0     0.0012   16.4   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
  ------ inclusion threshold ------
      0.018   12.6   0.0       0.02   12.5   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      0.042   10.7   0.0      0.053   10.4   0.0    1.1  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.6e-07    0.0012      14      67 ..      59     112 ..      53     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.6e-07
    TIGR00537  14 nlrelknddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnve 67 
                  n    k+++vle+GaG+G+    + + +++++ td + +  +ll++na l   +
  MMETSP1174-20130828|14464_1  59 NQALFKGKHVLELGAGAGMAGAVAGHFAERVTLTDGSDVVLRLLERNAELVRED 112
                  5556799************9999999999*******************987665 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05      0.02      26      83 ..      55     111 ..      32     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.5e-05
    TIGR02072  26 llkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqf 83 
                  ++  ++  f+ ++vL++G+G G+   a++  f +  ++++D s+  l+ ++++ + v  
  MMETSP1174-20130828|14464_1  55 FVVRNQaLFKGKHVLELGAGAGM-AGAVAGHFAER-VTLTDGSDVVLRLLERNAELVRE 111
                  555544578899**********5.55666666665.7999*999999999988764444 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.9e-05     0.053     116     160 ..      66     108 ..      50     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.9e-05
    TIGR00536 116 khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaek 160
                  kh+l+lg G G +a a+A +++   v+  D s  +l + e+Nae 
  MMETSP1174-20130828|14464_1  66 KHVLELGAGAG-MAGAVAGHFA-ERVTLTDGSDVVLRLLERNAEL 108
                  79*********.57799****9.89*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.52
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|14462_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1138.88
//
Query:       MMETSP1174-20130828|14466_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 409.50
//
Query:       MMETSP1174-20130828|14465_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|14476_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1103.29
//
Query:       MMETSP1174-20130828|14477_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 933.35
//
Query:       MMETSP1174-20130828|14479_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-36  124.0   0.1    8.3e-36  121.9   0.0    1.8  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
  ------ inclusion threshold ------
       0.17   10.2   4.8       0.35    9.3   3.3    1.4  1  TIGR03601 B_an_ocin: probable heterocycle-containing bacteriocin, BA_2677 family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   4.1e-39   8.3e-36     172     345 ..       3     174 ..       2     187 .. 0.94
   2 ?   -0.4   0.2     0.061   1.3e+02      69     109 ..     188     223 ..     173     237 .. 0.48

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 4.1e-39
    TIGR02349 172 vrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklkipagtqsgevlrlkgkGvkklkskkrGdllvkvkvevPkklskeeke 345
                  v+++q+t++g++++q+ C  C+G G+++k+ C++C G+g+v++k++++v++P+G  dg+r++ +g G+ag++g  +G L vev+  +h++f+r g++ll+ ++  +v+a lg ++ + +++g    l+ ++ +++++v +l+g+G++++   +rGdl+++v v++P+ l k ++ 
  MMETSP1174-20130828|14479_1   3 VVTEQRTPMGYVRFQRPCGACGGVGRVVKSACRSCAGQGTVRSKERLKVDVPPGCPDGHRVQFNGMGDAGQRG-VNGVLVVEVSAFDHPKFQRLGHHLLLAIHAPLVDALLGLHMPLASIDGkALVLETERVVKPNSVWVLRGHGMPHRG--GRGDLYIRVIVDFPEVLRKGDES 174
                  678899****************************************************************996.9***********************************************77899********************955..6**************99886654 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.061
    TIGR02349  69 gleggaggggagfegfeasefgdigdifeeffgggggsgrr 109
                    + ++++++++++    ++ ++ + +f+++fg++++ g++
  MMETSP1174-20130828|14479_1 188 SSKVQQQRKDGTYA----KDGSKDKGLFGNLFGKSQE-GEA 223
                  33332222222222....3344455677777775553.333 PP

>> TIGR03601  B_an_ocin: probable heterocycle-containing bacteriocin, BA_2677 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.3   0.00017      0.35      39      62 ..      17      40 ..       4      46 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00017
    TIGR03601 39 arrcggcggcggrgggrcggcagr 62
                  r cg cgg+g++    c  cag+
  MMETSP1174-20130828|14479_1 17 QRPCGACGGVGRVVKSACRSCAGQ 40
                 589*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 931.26
//
Query:       MMETSP1174-20130828|14480_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1316.12
//
Query:       MMETSP1174-20130828|14484_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|14487_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 235.00
//
Query:       MMETSP1174-20130828|14482_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:01.05
# Mc/sec: 592.07
//
Query:       MMETSP1174-20130828|14485_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|14481_1  [L=1780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   10.2   0.0        0.2    9.2   0.0    1.4  1  TIGR00994 3a0901s05TIC20: chloroplast protein import component, Tic20 family


Domain annotation for each model (and alignments):
>> TIGR00994  3a0901s05TIC20: chloroplast protein import component, Tic20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0     5e-05       0.2      19      88 ..    1580    1649 ..    1568    1661 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5e-05
    TIGR00994   19 nstiskkfvslavavpakdavsklrlsassieerkprelaslslsassdlllageenrlsrllPslrthk 88  
                    s + + + +l v  +a  av+ lr+++ s  +  +r ++ ++ s++sd +  +++n   + + + +th 
  MMETSP1174-20130828|14481_1 1580 YSKLGQMYHELCVNWSAPLAVAALRCYSDSLRRANARPITHHQKSSTSDKITETKQNLNDKKVQAGPTHV 1649
                   5777788888999999999*********************************999998877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.15s 00:00:01.12 Elapsed: 00:00:00.70
# Mc/sec: 3356.29
//
Query:       MMETSP1174-20130828|14489_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.67
# Mc/sec: 839.21
//
Query:       MMETSP1174-20130828|14488_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 995.92
//
Query:       MMETSP1174-20130828|14491_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1129.24
//
Query:       MMETSP1174-20130828|14492_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.59
# Mc/sec: 1655.46
//
Query:       MMETSP1174-20130828|14493_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-22   76.4   0.0    9.1e-22   75.2   0.0    1.6  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    4.9e-19   66.3   0.0    2.1e-18   64.3   0.0    1.7  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.5e-16   58.3   0.0    2.2e-16   57.7   0.0    1.2  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    1.5e-15   54.8   0.0      2e-15   54.4   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
    2.1e-15   54.5   0.0    6.6e-15   52.9   0.0    1.7  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    9.8e-15   52.1   0.0    1.4e-14   51.6   0.0    1.2  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    2.9e-14   50.6   0.0    7.3e-14   49.3   0.0    1.5  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    8.9e-14   49.0   0.0    2.6e-13   47.5   0.0    1.6  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    4.8e-12   43.4   0.0      6e-12   43.1   0.0    1.1  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    8.7e-09   32.5   0.0    1.2e-08   32.1   0.0    1.1  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    4.3e-08   29.8   0.4    4.4e-06   23.2   0.8    2.8  2  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   2.4e-24   9.1e-22     142     342 ..      38     250 ..       4     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 75.2 bits;  conditional E-value: 2.4e-24
    TIGR03947 142 rtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydae.............plpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevavehadalieprlaearanrrrlldWaaahedvvrltvPeGGvaafprfagladvtdlCerllarhgvlvvPGscfGaadrvrlGfg 342
                  + ++v +  P nP+G+ + +++l ++ +l ae g +l+ d+ +  + yd                +p+  ++  +vi +  +sk +G+ G rvG+   P  l +el++++d + +  s   ++ a  a++   + ++ r++e +a +++++    +  +  ++   +G +  f+++++  d+ +  + l+++hgv v+PGs  G +  +r+ ++
  MMETSP1174-20130828|14493_1  38 QLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEReggddgddecrggHVPHSCVEGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVICPSLTSQYAALGALKAGSTWVTERVSELTAQKAIVKKVLVETLGGAAVQGGSGAIYLFVKLPTGDDMSA-VRFLAEEHGVCVIPGSSCGMPGYMRVCYA 250
                  246787778***************************************974222222233333358999999*******************************************9999999***********************************999999999999999999999888776.699**********************9886 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   5.5e-21   2.1e-18     163     381 ..      37     265 ..      30     266 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 5.5e-21
    TIGR03540 163 kkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeyk............alsflevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdllvealkki..GldvkkpkatfylWvkvPeGytsaefakklleeagvvvtpGvgfGesGeGyirislt.vseerlkeaverlk 381
                  ++ k++ l  P+nP++ + +   + +v ++++e ++ +v d++y   ++de +             +    v+g++   i++ s+sk y m GWr+g+ +   +l   l kv++ +      + q+aa+ al+  ++ v+e ++    +++++ + l +   G  v+  ++++yl+vk P G + ++ ++ l ee gv v pG + G    Gy+r++ +  + +  +ea +rlk
  MMETSP1174-20130828|14493_1  37 RQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEREggddgddecrggHVPHSCVEGSH--VINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVICPSLTSQYAALGALKAGSTWVTERVSELTAQKAIVKKVLVETlgGAAVQGGSGAIYLFVKLPTG-DDMSAVRFLAEEHGVCVIPGSSCGMP--GYMRVCYAnLPLDATREAAARLK 265
                  5678889999***************************************987622222111111112222334433..57899***********************************9999***************99999988888888888877543346889999************9.88999*******************86..79999875257788888888875 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   5.9e-19   2.2e-16     171     396 ..      40     265 ..      17     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 5.9e-19
    TIGR01265 171 valvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd............atfvplaklaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvk.PegamyllvklelelleeikdDvdFceklvkEesvillPgsalelenylRitlt.veksvleealeRik 396
                  +++ ++nPsnP+G       l +v ++++++++ ++ D+ Y+++ +++              +vp + + +   v+ + + sk++   GWr+G++ +    +    +v+++++ +      p+   q A   +l k+   + ++ ++ l  +  +v + l e  g  +v+  +ga+yl+vkl +       dD++ +  l++E+ v ++Pgs  ++++y+R+  +  +    +ea+ R+k
  MMETSP1174-20130828|14493_1  40 KMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEreggddgddecrGGHVPHSCV-EGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVIC------PSLTSQYAALGAL-KAGSTWVTERVSELTAQKAIVKKVLVETLGGAAVQgGSGAIYLFVKLPT------GDDMSAVRFLAEEHGVCVIPGSSCGMPGYMRVCYAnLPLDATREAAARLK 265
                  566789****************************************99888999988877678887665.45679********************98765444333355555544......4444455555555.56788999999*****************99999999**********976......5899****************************98735889999**99998 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.3e-18     2e-15     138     331 ..      33     247 ..      13     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5.3e-18
    TIGR01141 138 eaakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee..............asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvrapynv..sslaleaavaalrdsd.kiektveevkkererlleelkkl.egle.vyeSkaNFvlikvke..daeelleallekgiivRdlksaeglleeclRi 331
                  + ++++ k+v l +P+nP G +l  + +++v +   e  +  VvD+ Y +Fs +               +v     e ++++ + ++SK +g+ g RvGy     ++  +l kv++   +  s  ++ aa+ al+  +  + ++v e+ ++++++++ l +   g   +  S a ++++k+++  d +++   + e+g+ v   +s  g+ ++++R+
  MMETSP1174-20130828|14493_1  33 ASQSRQLKMVTLVNPSNPAGVMLPPATLIQVSNLCaEfGVWLVVDNTYEHFSYDereggddgddecrgGHVPHSCVEGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVIcpSLTSQYAALGALKAGStWVTERVSELTAQKAIVKKVLVETlGGAAvQGGSGAIYLFVKLPTgdDMSAVRFLAEEHGVCVIPGSSC-GM-PGYMRV 247
                  378899***************************99888999***********999**********9988888889999*************************************98776434556778899**99998999**************9987651555534557999*******9966666777777899*99999988.86.999998 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.8e-17   6.6e-15     117     295 ..      29     228 ..      10     251 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.8e-17
    TIGR01140 117 leelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaea.............lpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsv..ngpAqavgeaala.deawqkatrarlaaererlaall.aalgllevvg.gtalFllvrtedaa..alkeaLarr 295
                  + + a++ ++++++ +vnP NP G +l++++l ++ + +++ g++lvvD  +  f+ +e +  +  ++              ++++ + S+ K +g+ G R+G++  + +l  +l ++++   +  +  +q+++  al+  ++w+++  ++l+a+++ ++++l ++lg+  v g + a +l+v+++++   +  + La++
  MMETSP1174-20130828|14493_1  29 ASDGASQSRQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDErEGGDDGDDecrgghvphscveGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVIcpSLTSQYAALGALKaGSTWVTERVSELTAQKAIVKKVLvETLGGAAVQGgSGAIYLFVKLPTGDdmSAVRFLAEE 228
                  4444456699*********************************************9887544333222444555555664455666678*****************************9998874456788999888874678****************99883567777776535577777777766633555555554 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   3.8e-17   1.4e-14     171     396 ..      39     265 ..       9     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 3.8e-17
    TIGR01264 171 tkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg............atflalaslssevPilslgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqril.GpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaevvGlkpvk.PkGamyllvkielekfkelksdvefveklveeesvfvlPgsifelPgylrvvlt.vpkavleeavsrik 396
                   k++ + nPsnP+G ++    l ++  l+++  + ++ d+ ye++ +++              + + + ++ +  ++ +   +k + + GWr+G++ +         +k  l k+   i+  p+   q a   +l+ +   + ++ vs l  +  +v ++l e  G  +v+  +Ga+yl+vk+         +d++ v+ l ee+ v v+Pgs   +Pgy+rv  +  p    +ea+ r+k
  MMETSP1174-20130828|14493_1  39 LKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEreggddgddecrGGHVPHSCVEGS-HVINIFSFSKGYGMMGWRVGYISYPSS------LKPELLKVQDTIViCPSLTSQYAALGALK-AGSTWVTERVSELTAQKAIVKKVLVETLGGAAVQgGSGAIYLFVKLPT------GDDMSAVRFLAEEHGVCVIPGSSCGMPGYMRVCYAnLPLDATREAAARLK 265
                  5788899****************************************99888999998877778887777654.57788899**************88654......33444444444331444445666666665.5678999999999999999***999988777766279*******9865......47999999999*********************9752799********986 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.9e-16   7.3e-14     135     333 ..      37     249 ..      28     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.9e-16
    TIGR03537 135 retkivwinyphnptGaeapasylkevaelareygiilasdecyaeiysee...............kpasvlevglenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataaws.ddahvaerrkifkrkrdlfleflakk..GlealasdatfylwvkvpegidaksyalrlleeGivvapGeafgageeeyvrval 333
                  r+ k+v +  p np+G + p + l +v++l+ e+g+ l+ d+ y +   +e                p+s +e    +v+ ++s sk  Gm G+r g+++  ++l   l k++ ++ ++     q aa  a +     v+er   ++ ++ +  + l ++  G  ++ ++ ++yl+vk p+g d ++      e+G+ v pG++ g    +y+rv  
  MMETSP1174-20130828|14493_1  37 RQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEreggddgddecrgghVPHSCVE--GSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVICPSLTSQYAALGALKaGSTWVTERVSELTAQKAIVKKVLVETlgGAAVQGGSGAIYLFVKLPTGDDMSAVRFLAEEHGVCVIPGSSCGMP--GYMRVCY 249
                  6788999999**********************************99854433444455556655556888766..5689********************************998886654444566777666516789****99999999998888876444788899999***********5555444444579********99877..8999965 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   6.9e-16   2.6e-13     170     384 ..      35     249 ..      24     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 6.9e-16
    TIGR03542 170 eekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdp..............slPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaa..glkvyGGenaPylWvklpegissedffdkllkeaevvgtPGsGfGssGeGfvrlsa 384
                  ++++++++ l  P nP+G +l  ++l ++ +   e +  ++ d +ye f  d+              ++P+s  e  g++   i+i sfsk  G+ G r+gy   P  lk         +  +++ t     sl  q aa  +l+  g +  +e +s    +  i++k l ++  g  v GG  a yl+vklp+g +++ +  +l +e  v ++PGs  G    G++r+  
  MMETSP1174-20130828|14493_1  35 QSRQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEreggddgddecrggHVPHSCVE--GSH--VINIFSFSKGYGMMGWRVGYISYPSSLK--------PELLKVQDTIVICPSLTSQYAALGALKA-GSTWVTERVSELTAQKAIVKKVLVETlgGAAVQGGSGAIYLFVKLPTG-DDMSAVRFLAEEHGVCVIPGSSCGMP--GYMRVCY 249
                  677899*******************************************87653333333334444469999865..443..6899********************9998........33345667788889999**888877765.556667778888888889999998765599****************95.8999999**************88875..6888754 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.6e-14     6e-12     140     341 ..      36     248 ..      19     265 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.6e-14
    TIGR03539 140 pekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege...........avsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaala.ddehvaeqkeryaarrellkaaleka..GfriehseaglylWatrge.daretvdrlae.lGilvaPGdfygeagkefvrva 341
                  ++++k++ l  P+nP G +l    l +v +l  e gv ++ d+ y  ++++++              v +  v   + + ++ ++s+sk   + g+r g+++  + l  ell+v+    +  +   q a   al+  ++ v+e+ +  +a+++ +k+ l ++  G  ++   +++yl+      d  ++v+ lae +G+ v PG+  g  g   +rv+
  MMETSP1174-20130828|14493_1  36 SRQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEReggddgddecrGGHVPHSCV---EGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVICPSLTSQYAALGALKaGSTWVTERVSELTAQKAIVKKVLVETlgGAAVQGGSGAIYLFVKLPTgDDMSAVRFLAEeHGVCVIPGSSCGMPGY--MRVC 248
                  46789999******************************************99977766655432222222222...234699********************************988877777777877777776156789999999***********98755599************98765588899****9638*******98886654..4443 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.1e-11   1.2e-08     165     357 ..      37     237 ..      27     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.1e-11
    TIGR03538 165 krvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaa..el..GrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrtyhGcampiavqlasiaaWed.ekhvrenralyrekfaavleilgavl...dlelPdasfylWlkvpdgddeafaralyeeenvkvlpGr 357
                  ++ +++ +  P nP+G +l+  +l ++ +l  +++  +  d+ y  + +de e      + +   ++     +  +++   s+sk   + G r G+++  ++l  e l+ +     + +++ q a++ a +   + v+e  ++  ++ a v+++l ++l    ++  +++ yl++k p gdd + +r l ee+ v v+pG+
  MMETSP1174-20130828|14493_1  37 RQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAEFGVWLVVDNTYEHFSYDEREGGDDGDDECRggHVphSCVEGSHVINIFSFSKGYGMMGWRVGYISYPSSLKPELLKVQDTIVICPSLTSQYAALGALKAgSTWVTERVSELTAQKAIVKKVLVETLggaAVQGGSGAIYLFVKLPTGDDMSAVRFLAEEHGVCVIPGS 237
                  67789999*****************************************99987665555554112200334567899999*****************************999999999*******99887615678888888999999999999999844358888999******************************7 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.8   1.2e-08   4.4e-06     239     323 ..      37     134 ..      32     139 .. 0.75
   2 ?    0.5   0.0     0.086        32     466     508 ..     221     262 ..     202     273 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.2e-08
    TIGR03801 239 pkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvddfr.........sllaelpant......ilvysfskyfgatGWrlgvia 323
                   ++k++ +vnPsnP++v + ++++ ++ ++ +e    + ++ D+ y  f+ d r            +++p+        i ++sfsk +g+ GWr+g i+
  MMETSP1174-20130828|14493_1  37 RQLKMVTLVNPSNPAGVMLPPATLIQVSNLCAE--FGVWLVVDNTYEHFSYDEReggddgddeCRGGHVPHSCvegshvINIFSFSKGYGMMGWRVGYIS 134
                  689****************************99..6778889*******96543121111111334455554311122289****************997 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.086
    TIGR03801 466 vlfrlaeessivLLkgegfkseewsvrvsLanLneedyaeiGk 508
                   +  laee+++ +++g++ + + + +rv  anL  ++ +e   
  MMETSP1174-20130828|14493_1 221 AVRFLAEEHGVCVIPGSSCGMPGY-MRVCYANLPLDATREAAA 262
                  56679*************998876.8*******8777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.68
# Mc/sec: 539.60
//
Query:       MMETSP1174-20130828|14495_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 769.94
//
Query:       MMETSP1174-20130828|14496_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   13.3   0.2      0.011   12.5   0.0    1.4  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      0.008   13.0   0.3      0.014   12.3   0.0    1.4  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.5e-06     0.011     412     479 ..       8      78 ..       3      86 .. 0.91
   2 ?   -3.9   0.3      0.52   1.1e+03     233     247 ..     278     292 ..     258     311 .. 0.44

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.5e-06
    TIGR01649 412 ypPsatLHlsNiPlsvsEedlkelfaekgvkvkafkvFpkd...skmallelesveeAveaLialnnhqlk 479
                   pP + + l N+P   ++++lk ++ ++++  +++++  +d   s  a+l + s+e A +a  +l+  ++ 
  MMETSP1174-20130828|14496_1   8 APPPSMVRLVNLPYVTTDNELKAICGQQDIPCQTVDIVLNDgnpSGRAVLHFSSKELAAQAAETLHGSKIG 78 
                  57888999*****************************9999989999****************99988875 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.52
    TIGR01649 233 lrdrPssygdavdgl 247
                  l+ +P+++g  ++  
  MMETSP1174-20130828|14496_1 278 LQTHPATFGYEQQQQ 292
                  455555555322221 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.7e-06     0.014     442     489 ..      41      88 ..      34      94 .. 0.93
   2 ?   -4.2   0.7      0.66   1.4e+03     301     314 ..     293     304 ..     276     313 .. 0.41

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.7e-06
    TIGR01622 442 vvhiyvdkknsaGkvYlkfdsveaalaavkalngRyFagklitAafvv 489
                   v i +++ n  G   l+f+s e a++a ++l+g   +g+li A++v 
  MMETSP1174-20130828|14496_1  41 TVDIVLNDGNPSGRAVLHFSSKELAAQAAETLHGSKIGGRLILATHVQ 88 
                  68899999************************************9986 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 0.66
    TIGR01622 301 eesdaslaskfeds 314
                  ++++    ++++ +
  MMETSP1174-20130828|14496_1 293 QQQQL--HQQQQHQ 304
                  11111..1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 963.83
//
Query:       MMETSP1174-20130828|14499_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   17.3   0.0    0.00094   16.6   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-07   0.00094      16     127 ..      50     166 ..      35     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.3e-07
    TIGR01250  16 ftkvkeegekikllvlHGGPgssheyleslkellke.gvevilYDQL.GsgkSdqPddsdekllt.idrfvdEleevrekLaldk...fyllgqSwGglLaqeYalkyqqhlkgliis 127
                  +t ++ +g +  +++lH   g +   +e+ ++l+++ g +v+  D + G  + + P      l t  dr+ d+l++v + L+l++   + ++g  +Gg  a+ Ya ++ +++ ++++ 
  MMETSP1174-20130828|14499_1  50 YTATG-KGAGGTIILLHEFFGLNPSIIEKAEALSQDlGCTVVAPDTFrGDVTDNIPRAIWLALSTpQDRVNDDLDAVCSYLGLEEgakLAIMGFCYGGGKAIRYATQRRPDAATVVFY 166
                  55554.7778999********************************996778888898876666663688999***********98888********************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 869.77
//
Query:       MMETSP1174-20130828|14498_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   31.0   0.0    1.5e-08   30.7   0.0    1.0  1  TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
    0.00039   16.6   0.0     0.0005   16.2   0.0    1.0  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
    0.00074   16.9   0.0     0.0011   16.4   0.0    1.1  1  TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family


Domain annotation for each model (and alignments):
>> TIGR01405  polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.1e-11   1.5e-08     211     358 ..     171     320 ..     153     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.1e-11
    TIGR01405 211 laavkvkngkiiekfelfikpeeklsekvteltgitdemlena.keleevleklkefl.kdavlvahnasfDlgflktkfekvnleelenpviDtLelaralnpe...yksyrLgeiakk.leve.leeahradyDaealakvfkvlveelkekg 358
                  +a v + n  +   f+ ++kp+ ++ + +t ltg+t+e le +  ++ee+l+ ++  l   avlv  n+  D ++l  +       +  +++iD  +l r+ n e   +  ++L++iak  l+v+ + + h a  Da++   +f ++ + +++ +
  MMETSP1174-20130828|14498_1 171 IAQVAMVNADLNLIFDIYVKPSVPVMSYITPLTGLTEEILESQgVSEEEALKSVRRHLpRSAVLVGLNIRQDADWLGLE-----EGKDYQSLIDLSALFRVWNNErrsFTYFSLDHIAKSwLDVNrYGQSHNAASDARTSMALFNTFTNVMHNPE 320
                  45566666666667899***********************965278999*****98873679*************9887.....344567899*9999999998722255578*****97357752556*******************9998766 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.7e-07    0.0005       5     157 ..     155     308 ..     153     320 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.7e-07
    TIGR01407   5 vDlE..tTgtsssedkIIqiGivlvedgeivetfatdvnpneeippfIqeLTgisdeqlkqAP.eFsqvaqeiydll.edgiFVAHNvhFDlnllakelkeeglellevpviDTvelariflPteesy...kLseLsee.lgle.henpHrAdsDAkvTAeL 157
                  +D+E  +Tg +  +  I q+ +v  + + i + +   v+p  ++   I  LTg+++e l+      ++  + ++  l + ++ V  N++ D++ l    +eeg ++  +  iD   l+r+   + +s+   +L++++++ l+++ + ++H+A sDA++   L
  MMETSP1174-20130828|14498_1 155 IDVEciATGPQHHDRAIAQVAMVNADLNLIFDIY---VKPSVPVMSYITPLTGLTEEILESQGvSEEEALKSVRRHLpRSAVLVGLNIRQDADWLG---LEEGKDY--QSLIDLSALFRVWNNERRSFtyfSLDHIAKSwLDVNrYGQSHNAASDARTSMAL 308
                  6777335666655566778888877777776666...9*********************8665155667788887663789*************98...5799999..789*************999633368888887589963679********998766 PP

>> TIGR00573  dnaq: exonuclease, DNA polymerase III, epsilon subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.8e-07    0.0011      17     175 ..     162     314 ..     153     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.8e-07
    TIGR00573  17 tglkakkdiIeigAveiinrrliinkfetyikpdrkikpdaikihgitddmLkdkp.dfkevaedfadyi.kgkvLvihnasfDvgFlnaefkkllkkekkkndvidvldllqvvrkefpgkrn.tldalakryeiens.kRalhgaladAfilaelylvmte 175
                  tg++++ + I+  A++  +  l    f +y+kp  ++ + +  ++g+t+++L+ +  +  e  + +++ + + +vLv+ n+  D ++l  e        k+ + +id+ +l +v  +e+    + +ld  ak + +++      h+a  dA+  + l+ + t+
  MMETSP1174-20130828|14498_1 162 TGPQHHDRAIAQVAMVNADLNL---IFDIYVKPSVPVMSYITPLTGLTEEILESQGvSEEEALKSVRRHLpRSAVLVGLNIRQDADWLGLEEG------KDYQSLIDLSALFRVWNNERRSFTYfSLDHIAKSW-LDVNrYGQSHNAASDARTSMALFNTFTN 314
                  5555555566666666444444...489************************9876155678999*99986899*************987655......567779********999998876652777777665.555503568**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1058.98
//
Query:       MMETSP1174-20130828|14502_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|14501_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 734.19
//
Query:       MMETSP1174-20130828|14504_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1174-20130828|14508_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|14506_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1244.98
//
Query:       MMETSP1174-20130828|14509_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.8   0.4      0.017   11.3   0.3    1.1  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   4.2e-06     0.017     380     414 ..      23      58 ..      18      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.2e-06
    TIGR00575 380 ekRtaeekeikipteCpsCgselvkl.eeevalrCt 414
                  + R+ +++ i+ p++Cp C ++++k  ++e+++rC+
  MMETSP1174-20130828|14509_1  23 KVRPRKKEVISSPEQCPFCPEDVRKGaNDEKSARCP 58 
                  67999******************997589999***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 665.81
//
Query:       MMETSP1174-20130828|14511_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|14512_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|14515_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   13.9   0.0     0.0072   13.4   0.0    1.3  1  TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family


Domain annotation for each model (and alignments):
>> TIGR03571  lucif_BA3436: luciferase-type oxidoreductase, BA3436 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.7e-06    0.0072     160     207 ..      27      74 ..      11     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-06
    TIGR03571 160 lesslgelegeldllpkpvekeiPllavGsarQsleWiaenadgwlty 207
                   + s+ +l+++ ++++ ++++ iPl ++G+a Qs++ +  ++ + + y
  MMETSP1174-20130828|14515_1  27 TSVSAATLTATTEVITPSAATDIPLTVTGHASQSVDLFLVQSSASAEY 74 
                  3445678899999999999****************9888777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.82
# Mc/sec: 326.75
//
Query:       MMETSP1174-20130828|14514_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-05   20.5   0.0    7.4e-05   20.2   0.0    1.2  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family


Domain annotation for each model (and alignments):
>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.8e-08   7.4e-05      82     220 ..      17     169 ..       4     214 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.8e-08
    TIGR03649  82 dlasllikFidvavkkgvkrfvllsasaiekGgpalgkvhaylkel.................eeveyavLRptWfmenfeeelhveaikeenklysAtsdgkiPfvsaeDiArvAvkaLtd.ksak.nteylvlGpeLltYddvAeiLsevlgRkit 220
                  d a l ++ ++ a ++gv++++++ + +++   +a+++++  +                      ++++ LR+ +f  n+  ++   +++  ++l+   ++   P v   D+ r A+ aL + ++      y + Gp +lt +++A+i ++ lgR i+
  MMETSP1174-20130828|14514_1  17 DDAMLSVNMLNAAARQGVEHIIYVGSWTVHE-PDAVSEISMRFIPPesrllelaaeaegeksrRRLTWSSLRSGFFAPNLAAMF--GSLRTSDTLVFP-EECAFPPVDPRDVGRAAA-ALASsRTPFeTGTYEITGPKVLTVNEMASIFADALGRPIH 169
                  5566677778888888888888776555555.4556666543322235677788888888888999**************9887..589999999975.77889*********9776.5655244433668************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 883.93
//
Query:       MMETSP1174-20130828|14518_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-21   74.6   0.0      2e-21   73.9   0.0    1.2  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    5.5e-18   62.5   0.0      7e-18   62.2   0.0    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    7.9e-18   62.3   0.0    1.2e-17   61.8   0.0    1.2  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    3.7e-16   56.8   0.0    5.7e-16   56.2   0.0    1.2  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    2.5e-15   53.9   0.0    3.2e-15   53.5   0.0    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    2.2e-14   51.0   0.0    2.7e-14   50.7   0.0    1.1  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    4.1e-14   49.9   0.0    5.2e-14   49.5   0.0    1.0  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.6e-13   48.0   0.0    2.2e-13   47.5   0.0    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.6e-12   44.7   0.0    5.8e-12   42.8   0.0    1.8  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    3.9e-11   40.2   0.0    5.4e-11   39.8   0.0    1.1  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    5.5e-10   36.3   0.0      1e-09   35.4   0.0    1.5  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    2.3e-08   30.5   0.0    3.1e-08   30.1   0.0    1.0  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   5.8e-24     2e-21     134     463 ..      10     355 ..       2     377 .. 0.75

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 5.8e-24
    TIGR01238 134 evreavdflryyakqvedvldeesaka...............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivd.stalaeqvvadvlasafdsaGqrcsalrvlcvqedv.adr..vltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkledd...vesekgtfvaptlf........elddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrn 463
                  ev+ + dfl+ ++++    ++   ++                 G+v  ++p+nfpl i + q+  al+ Gn    k a  ts+i  + + +l+  G+pa+ + l+   G  +G  l +    +   ftGs eva+ +  +    +  +   i e  G +  i+       e v     + a++++Gq+csa  +l++ e+  a +   ++ ++G        + ++    +Gpv+   + +++lah e++ a    +     +     +  e   +v+pt++        + +++++   e+fGp   +  y  + ld v++  ++  + lt  + s       ++ ++   G  yv r 
  MMETSP1174-20130828|14518_1  10 EVKVTADFLKNWGGDN-PRFNAGGMHVpgdhlgqesrgyrwpYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGE-LIERGPFRLTQFTGSCEVAEALATT----TGGK-IRI-EDAGFDWKILGpDVGDEEYVAWTCDQDAYAASGQKCSAQSMLFMHENWlAPEggFVDRLQGLAA-----RRNLADLTIGPVLSH-TTEEILAHTERLAAIPGAYVAFGGKPLtghTTPEIYGMVEPTAVfvpleellKEENFAACATEIFGPFQVLTSYDDSSLDLVLQACESMSHHLTAAIVSNDLRFQDKVLGHTVNGTQYVGRR 355
                  6666666666666554.33333332223455555555567779*******************************************************************9997.6677778999*********876554....4444.334.55556665655055666778888899******************99851322114555555433.....334445569***976.56889*******998877765543322122333444455555431222100155899******************************************99999999****999*9999985 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     2e-20     7e-18      98     431 ..      12     352 ..       4     379 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 2e-20
    TIGR01804  98 ddiadvleffaGladkle..Geiielgip.sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqal.lanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeelde.GffiePt.vfadvt.....ddmtivreeifGPvlsvlefese..eevikrandteyGlaagvftadleraervaerlkaGtvwi 431
                  + +ad l+ ++G  ++++  G  ++     ++++  r p G v+ ++++n+Pl i + +   al +Gn   lk +  t +   +  ++l+  G+P   +++++  g+++Ge l e+    +  +tG+ e    ++++++    k+ +e  G + +i+  d   e  v  +  + ++  +Gq cs+ + ++++++  +  +  +v+r + + +   + +   +GP++s +  + + +  + +   ga +a GGk +  +   e    +ePt vf   +     ++      eifGP   + ++++   + v++  +   + l+a+++++dl   ++v  +   Gt ++
  MMETSP1174-20130828|14518_1  12 KVTADFLKNWGGDNPRFNagGMHVPGDHLgQESRGYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGE-LIERGPFRLTQFTGSCEVAEALATTTGG---KIRIEDAGFDWKILGPDVGDEEYVAWTCdQDAYAASGQKCSAQSMLFMHENWLAP-EGGFVDRLQGLAARRNLAD-LTIGPVLSHTTEEILAHTERLAAIPGAYVAFGGKPLTGHTTPEiYGMVEPTaVFVPLEellkeENFAACATEIFGPFQVLTSYDDSslDLVLQACESMSHHLTAAIVSNDLRFQDKVLGHTVNGTQYV 352
                  5678999999999998652155666655579999****************************************************************************8.56777799*********99988777776...6789**********9997666555555505666679**************98765.7788999999988888865.569*****99887777777789999*********9998886552346899867776651111146678899*****99999998762256777778889******************99999998876 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   3.4e-20   1.2e-17     121     469 ..       2     355 ..       1     370 [. 0.79

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 3.4e-20
    TIGR01237 121 kiyaeadaevaeaidfleyyaremikla..kskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegk.lvlg.....gedddskGyfikpt.if...kdvdrkarla..qeeifGp..vvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrk 469
                  k+y +a  ev  + dfl+ +  +  +++  + ++  +  G++ r    p G    ++p+nfpl i v   + +++ Gn   lk a+++++i  +   +l+++G+p+  ++ +   G+ +Ge l++    rl  ftGs ev     e  a    G+      i + G    ++  +  d e  + +  + a+  +Gqkcsa s + ++e+   +   +fv++ + l  ++ + ad  +gpv+ +++ + + +   l+   g  ++ g     g + ++    ++pt +f   +++ ++ ++a    eifGp  v++    +  d  l+  +s  + lt +++sn     ++       G  y+ r+
  MMETSP1174-20130828|14518_1   2 KSYFQAWYEVKVTADFLKNWGGDNPRFNagGMHVPGDHLGQESRGYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGE-LIERGPFRLTQFTGSCEVA----EALATTTGGKI----RIEDAGFDWKILGPDVGDEEYVAWTCDQDAYAASGQKCSAQSMLFMHENWL-APEGGFVDRLQGLA-ARRNLADLTIGPVLSHTTEEILAHTERLAAIPGAyVAFGgkpltGHTTPEIYGMVEPTaVFvplEELLKEENFAacATEIFGPfqVLTSYDDSSLDLVLQACESMSHHLTAAIVSNDLRFQDKVLGHTVNGTQYVGRR 355
                  778899999999*********99999994444556788899999999****99999****************************************************************9.6788889********8885....44555555543....35566666677778889999999999*****************99999855.56789***999986.566778********98876655555556666555155555665556666655689999444232445444444312689****444555566778999999***************9887777777777777777765 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.7e-18   5.7e-16     132     444 ..      50     371 ..      43     387 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.7e-18
    TIGR03240 132 phGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvq.GaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdg..aeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksl......lelkqleeeaalltpgiidvtevaevpde........eyfgpllkvlrykd..fdealaeanntrfGlaaGllsddrelydkflleiraGi..vnwnkpltGassaapfGGiG 444
                  p+G +a+  p+nfp  +p   ++ al+ Gn   +k +  t ++ e+ ++++++ G+pa  ++l+  G+r  G  l+++       ftGs++  + l  + +g+   i   + G +  ++  +v d + ++ +  q a+ ++Gq+c+    l+++++  a    +++rl  +a+r ++ +        +G+v+s+ +  e+la  e+l+a +g+ +      l+ +++ e  ++++p+ + v   +e+  e        e fgp+  ++ y+d  +d  l++ ++  + l+a ++s+d    dk+l ++  G   v     +tGa  +  fG  G
  MMETSP1174-20130828|14518_1  50 PYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHcGGRAMG-ELIERGPFRLTQFTGSCEVAEALATTTGGK---IRIEDAGFDWKILGPDVGDEEYVAWTCDQDAYAASGQKCSAQSMLFMHENwlAPEGGFVDRLQGLAARRNLAD------LTIGPVLSHTTE-EILAHTERLAAIPGAYVafggkpLTGHTTPEIYGMVEPTAVFVPL-EELLKEenfaacatEIFGPFQVLTSYDDssLDLVLQACESMSHHLTAAIVSNDLRFQDKVLGHTVNGTqyVGRRARTTGAPQNHWFGPAG 371
                  8999***********************************************************983556666.58888899999************9999886...5556667777888899*************************99999998833445679999999998876654......458888887654.477777777766655542122113334445567888888776643.33333212222222789**999999986448999*********************99**9999988863366667899999999999877 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   9.5e-18   3.2e-15     132     432 ..      47     348 ..      24     370 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 9.5e-18
    TIGR02299 132 vrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfdda.dleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPt.vlvd.....adnkmriaqeeifGPvltvipfkdee..ealelandieyGlagyvwtedvgralrvaaaleaG 432
                   r p G+v+l++P+n P+ +   ++  al +Gn   lk a  + +   +  +++++ g+P   ++l+h  G+  G+ l+e    ++  f+G+ +  +a+ +    t  ++ +e  G +  i+  d  d e    +     ++  G++c+a+s l+++e+  +   + +++r + +     l + t +GP+++++  + +     +a   Ga ++ Ggk + +  +   +    v+Pt v+v      ++++      eifGP+ ++ +++d +   +l+  + +++ l++ + ++d++   +v  +   G
  MMETSP1174-20130828|14518_1  47 YRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGE-LIERGPFRLTQFTGSCEVAEALATT---TGGKIRIEDAGFDWKILGPDVgDEEYVAWTCDQDAYAASGQKCSAQSMLFMHENWLAP-EGGFVDRLQGLAARRNLADLT-IGPVLSHTTEEILAHTERLAAIPGAYVAFGGKPLTG--HTTPEIYGMVEPTaVFVPleellKEENFAACATEIFGPFQVLTSYDDSSldLVLQACESMSHHLTAAIVSNDLRFQDKVLGHTVNG 348
                  5789*****************************************************************9999997.8888999**********99998776...66788999999998888877526666667777899*****************997664.467888899999999997765.9****99988888888889*************9998..334444456777744544111113345667789************99862247788889999999999999998777665555555 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0     8e-17   2.7e-14      71     396 ..       2     336 ..       1     348 [. 0.81

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 8e-17
    TIGR01780  71 kplkeakgevlyaasyleWfaeeakrvy..GdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalas.kfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekgg....nffePtv....lsdv..tadmlvakeetfGPlapvfkfdde..eevvalandtevGlaayffskdla 396
                  k++ +a  ev+ +a +l+ ++ +  r    G  +++ +  ++    + P G++a+++P+nfP  +   +   al  G    +k a+ t +   +  r+ ++ G+P+  ++++ + ++++G+ +   P  r   ftGs +v   l + +     k+ +e  G    i+ +d+  ++ v+  +    + + gq c     l++he+        ++++++ l     l  + t+Gp++++++ e + +    a   Ga v  gG+  + + +     ++ePt     l +   +++      e fGP   + ++dd   + v++  +     l+a + s+dl+
  MMETSP1174-20130828|14518_1   2 KSYFQAWYEVKVTADFLKNWGGDNPRFNagGMHVPGDHLGQESRGYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGELIERGP-FRLTQFTGSCEVAEALATTTG---GKIRIEDAGFDWKILGPDVGDEEYVAWTCDQdAYAASGQKCSAQSMLFMHENWLAP-EGGFVDRLQGLAARRNLA-DLTIGPVLSHTTEEILAHTERLAAIPGAYVAFGGKPLTGHTTpeiyGMVEPTAvfvpLEELlkEENFAACATEIFGPFQVLTSYDDSslDLVLQACESMSHHLTAAIVSNDLR 336
                  788999************999999997544788999999*********************************************************************************9888777.59999*********9976665...57789***************9999999997626999***************97654.345777777788877775.579*****988766666666678889********6554333211114678985222233331134455667899*******99998621445555566677888888888875 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.5e-16   5.2e-14     131     432 ..      42     345 ..       6     355 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.5e-16
    TIGR03216 131 alnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaave.gvlrsaflntGqvclgtervyverpifd...rfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelae.Gayvqpt.iwtglpd.....sarvvkeeifGpvchvapfdse..eeviarandtayGlaasvwtedlsrahrvakkl 432
                  + +   r p G v++++p+n+pl +   ++  al +Gn   +k +  t         +++++G+p+   +++h  G  + Ge++ r p      ftG ++  ea+  ++     ++ +e  G +  i+  d+  ++ v+ ++ + a++ +Gq c +   ++++         fv +l+  a + +l      + ++Gp++s++  + +    +la   Ga v  G G p  g+ + e    v+pt +++ l++     + +    eifGp   ++ +d    + v++ +++ ++ l+a++ ++dl    +v  + 
  MMETSP1174-20130828|14518_1  42 QESRGYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHC-GGRAMGELIERGP-FRLTQFTGSCEVAEALATTTG---GKIRIEDAGFDWKILGPDVGDEEYVAwTCDQDAYAASGQKCSAQSMLFMHENWLApegGFVDRLQGLAARRNL-----ADLTIGPVLSHTTEEILAHTERLAAIPGAYVAFG-GKPLTGHTTPEiYGMVEPTaVFVPLEEllkeeNFAACATEIFGPFQVLTSYDDSslDLVLQACESMSHHLTAAIVSNDLRFQDKVLGHT 345
                  44567899***********************************99999999999999****************7.66789**999988.67789*******999865544...45779*************98888887255678****************9877664222577777776665544.....35789*****998776666678899999998876.5677776665514579998567766532221145677889***********9653367888889999***********98777776555 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   6.4e-16   2.2e-13     132     390 ..      46     308 ..      41     334 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 6.4e-16
    TIGR01722 132 sirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpda.dkeaaldalvgaavGaaGqrcmaisaavlvGaakelvee...ireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyee......GnfvGitllervk.pdmkiykeeifGpvlvvlead 390
                   +r p G va ++pfnfp  ip+  +  a++ Gn   lk +        +  ++l+++G+p   ++++h +  a+ +l+e    +   f Gs +v+e + +t+   g +++      +  ++ pd  d e ++ +    a+ a+Gq+c a s+  +    ++++      ++r++ +     + +   +Gp++++ + e +a+    +a  Ga v + G+ ++ +  +e         v + l e +k  + ++   eifGp  v+   d
  MMETSP1174-20130828|14518_1  46 GYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGELIERGPFRLTQFTGSCEVAEALATTT---GGKIRIEDAGFDWKILGPDVgDEEYVAWTCDQDAYAASGQKCSAQSMLFMH---ENWLAPeggFVDRLQGLAAR-RNLADLTIGPVLSHTTEEILAHTERLAAIPGAYVAFGGKPLTGHTTPEiygmvePTAVFVPLEELLKeENFAACATEIFGPFQVLTSYD 308
                  6899************************************999999999999*********************************************886554...44455555556788999**82555566677789***********9987764...55665412256666655433.33445568****99999888888888888999998888877654444411000044444444455542467888999999998887766 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.7e-14   5.8e-12     166     477 ..      46     353 ..      36     379 .. 0.72

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.7e-14
    TIGR01236 166 eyrpleGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadvee.vvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvg.dvddlssfmgavideksfakivkviekakkdpeeleilaGGk....yddskGy.fvePtvv......eskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekklrfa.aGnfyin 477
                   yr   G va ++Pfnf      l    al mGn    k ++t+ +     +++l+  G+P+  ++++ + g ++++ +   + +   +ftGs +v + l  +   ++           e  G d+ +  p    ee v+ +  + a+   Gqkcsa s l++ +  w   +  ++++l+ +    ++ dl+  +g+v+++++ + i    e+  + p    ++ GGk        + y +vePt v      + k+ +     +eifGP   +  ydd+  + +l+  +s s+  lt a++++d    +  +k+l ++  G  y+ 
  MMETSP1174-20130828|14518_1  46 GYRWPYGPVALVAPFNFPLEIPVLQLMGALmMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMGELIERGP-FRLTQFTGSCEVAEALATTTGGKI---------RIEDAGFDWKILGPDVGDEEyVAWTCDQDAYAASGQKCSAQSMLFMHEN-WLAPEGGFVDRLQGLAARrNLADLT--IGPVLSHTT-EEILAHTERLAAIP-GAYVAFGGKpltgHTTPEIYgMVEPTAVfvpleeLLKEENFAACATEIFGPFQVLTSYDDSSLDLVLQACESMSH-HLTAAIVSNDL---RFQDKVLGHTvNGTQYVG 353
                  57877899*********766666666666527***9999988877777777899***********************998765.78889******9999988777655.........45889999999999876555055556689****************9775.5554555555554443320234444..799998775.67778888888888.56688999833222223345579***88333222234455556679***********************998775.7*******995...444555543314666665 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.6e-13   5.4e-11     128     417 ..      41     338 ..      10     355 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.6e-13
    TIGR03374 128 ghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitplt.alklaelakdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedeste..lgplsslahlervsaaveeakalshikvitggekvkgkg...yy..faptl....lagakqdd..aivqkevfgpvvsitvfdde..eqvvrwandsryglassvwtkdvgra 417
                  g+ s   r p g va +ap+n+pl +   +l  al  gn   lk +  t +    +l  l +  +pa  v+++   g+ +g+ +      r+  +tgs    e + + t   i+      g    ++  d  d + v+       +  +gq c+a   +++        +   g  v  l+  a + + ++  +gp+ s +  e + a  e+  a++   v  gg+   g+     y   +pt     l + ++++  a    e+fgp   +t++dd   + v++ +++  + l++++ ++d+   
  MMETSP1174-20130828|14518_1  41 GQESRGYRWPYGPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMImEQYLRMLHHCGMPATDVDLIHCGGRAMGELI-ERGPFRLTQFTGSCEVAEALATTTGGKIRIED--AGFDWKILGPDVGDEEYVAWTCDQDAYAASGQKCSAQSMLFMHEN----WLAPEGGFVDRLQGLAARRNLADltIGPVLSHTT-EEILAHTERLAAIPGAYVAFGGKPLTGHTtpeIYgmVEPTAvfvpLEELLKEEnfAACATEIFGPFQVLTSYDDSslDLVLQACESMSHHLTAAIVSNDLRFQ 338
                  566677799************************************9999876157888999999*****************865.56779************999988888876543..44455577778899999**9********************98754....4555677777777666665555411699988765.7788999***********999999888652222322578762223445555551256789*************983356777777777888888888887655 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.1e-12     1e-09     141     291 ..      52     201 ..      46     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.1e-12
    TIGR03250 141 gvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagykravlelGGndplivled.adldraadlavkGsyknsGqrctavkrilvqes 291
                  g ++ ++pfn pl+  + +++ a+   nr  lk +  + +    ++ +l+ +G+p   ++++    r+++ eli      l  ftG+  +  ++a+++g k  + e  G d  i+  d  d +  a    + +y  sGq+c+a   ++++e 
  MMETSP1174-20130828|14518_1  52 GPVALVAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGMPATDVDLIHCGGRAMG-ELIERGPFRLTQFTGSCEVAEALATTTGGKIRI-EDAGFDWKILGPDvGDEEYVAWTCDQDAYAASGQKCSAQSMLFMHEN 201
                  5677899************************************************************998.7999999********************998665.6677777777777478899999999*************998888876 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     9e-11   3.1e-08     151     427 ..      57     336 ..      49     355 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 9e-11
    TIGR02278 151 inafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqli.vGs..vgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaalla.agaevrlgdpeeld............GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGs..lvaslvtadpe 427
                  +  fnfP    + +l  a++ G    +k a++t+ + e  ++++ + g+ P   ++li +G+  +g+l++    r    ftGs + ae l +     + + +  +e   ++  +lG+dv   ++e+ ++  +  ++  a +Gqkc+a   +++ ++ + a     ++rl+ +     +  d ++Gp+ s    e++ a  + l a  ga v +g++  +              a f P   l +e e  a  ate fGP   l +ydd    + l a    s  l a++v++d +
  MMETSP1174-20130828|14518_1  57 VAPFNFPLEIPVLQLMGALMMGNRPTLKSASTTSMIMEQYLRMLHHCGM-PATDVDLIhCGGraMGELIERGPFR-LTQFTGSCEVAEALAT-----TTGGKIRIEDAGFDWKILGPDVG--DEEYVAW--TCDQDAYAASGQKCSAQSMLFMHENWL-APEGGFVDRLQGLAARR-NLADLTIGPVLSHTT-EEILAHTERLAAiPGAYVAFGGKPLTGhttpeiygmvepTAVFVPLEELLKE-ENFAACATEIFGPFQVLTSYDDSSLDLVLQACESMShhLTAAIVSNDLR 336
                  567****98877788888888888888*******************995.9999**9955543367777777666.679*********9975.....56788999**************9..7887666..567999**********88877766655.6688999****998654.456789*****9876.56667777776626999***99876656778898777776666665444433.4456679**************9987666655443332377777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.61
# Mc/sec: 889.30
//
Query:       MMETSP1174-20130828|14520_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 150.84
//
Query:       MMETSP1174-20130828|14524_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|14526_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.43
# Mc/sec: 291.60
//
Query:       MMETSP1174-20130828|14527_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1267.71
//
Query:       MMETSP1174-20130828|14529_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 873.46
//
Query:       MMETSP1174-20130828|14530_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-16   56.5  18.9    9.4e-16   56.0  13.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
      0.014   13.2   5.2        0.4    8.6   0.5    3.8  3  TIGR04145 Firmicu_CTERM: Firmicu-CTERM domain


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0  13.1   4.6e-19   9.4e-16       6     294 ..      58     350 ..      53     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 4.6e-19
    TIGR00817   6 lfllwyvlnvyFnivnkkllkl..fhypvlktlvslav.gvllells.....wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalis.....ililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskv 294
                   ++lw++ n++  ++nk   +   fhyp++ + +++a  gv ++l+         +  kr ++++   ++++   i+   +    n sl  v v f  ++++l p + +++   +l++++ l   lsL+p+++Gv+la l el f  lgf+    + i    + ++s  +lt     +++l ++        l+   +++++ ++ ++  +   + +    v  + ++ v+l a++++    +  +    +  s+lt +v+   K v +Iv++ ++f+t+is+l+++G+++ +aG  lYs v
  MMETSP1174-20130828|14530_1  58 WLALWMINNIGVTLLNKAAFQFadFHYPYMLSAIHMAFnGVGMQLFFflspyCGGTPIKRKVLQTRGHQIIVAFSIIFSANVAIGNASLRYVTVNFNQVMRSLVPGVVMLIGVPLLKKTYSLQQRLSLIPVIIGVMLACLGELHFTNLGFCVTCFCVILAALKVLVSSMVLT----GEMKLHPIDLlsrmcPLACAEVLVVSYLTGEVDSILSRWDEL---VEGKAIYVVLLSAVSSV--SLNITSLYANKMTSALTLAVAANAKQVLMIVIATVLFGTRISVLNGIGIGVVLAGSGLYSYV 350
                  5899************888765448***********8526656666644454333444666666667778999999999999999***************************************************************************************....444444443300100222222333333333343333334333...66677777777777644..45556666667789*****************************************9999976 PP

>> TIGR04145  Firmicu_CTERM: Firmicu-CTERM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.014        29      21      36 ..      84      99 ..      83     103 .. 0.87
   2 ?    1.0   0.0     0.046        94      24      36 ..     186     198 ..     185     204 .. 0.86
   3 ?    8.6   0.5   0.00019       0.4      25      40 ..     334     349 ..     333     350 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.014
    TIGR04145 21 GPyllagIalviAagg 36
                 +Py+l +I +++ + g
  MMETSP1174-20130828|14530_1 84 YPYMLSAIHMAFNGVG 99
                 8*******99998887 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.046
    TIGR04145  24 llagIalviAagg 36 
                  ++++I++++A +g
  MMETSP1174-20130828|14530_1 186 IPVIIGVMLACLG 198
                  789*******988 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00019
    TIGR04145  25 lagIalviAaggvfki 40 
                  ++gI++v+A++g +++
  MMETSP1174-20130828|14530_1 334 GIGIGVVLAGSGLYSY 349
                  68************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1052.98
//
Query:       MMETSP1174-20130828|14532_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.86
# Mc/sec: 748.96
//
Query:       MMETSP1174-20130828|14534_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.63
# Mc/sec: 1667.67
//
Query:       MMETSP1174-20130828|14535_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   10.2   0.9      0.036    9.8   0.6    1.0  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   8.8e-06     0.036     447     572 ..     153     277 ..     146     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 8.8e-06
    TIGR00618 447 aiekelqieklkkaelqelaqklk..ekeqqlkdkeqilkqeerkkkveekrleelqeeprplcgsllhpeaklvaldepgadtsrlergeqevkklekslekvehqltserkqlkelkeqiqeiqqe 572
                  +++    +++++ a+ ++ + + +   +eq   d  +++++ ++ +    +r  ++q +  pl + +lh + +l ++++p++  s   +  ++v++  ++++k e    + +  +k   +   ++q++
  MMETSP1174-20130828|14535_1 153 HAQSRQNMQQQRTAQKRRTFSSFRgnRLEQERLDWSNYHNRAQEPESTIIRREDQHQ-NSPPLAK-ELHHHHHLADALNPPPRWSVKPGFGNRVQNT-TAIKKHENRAAETTFDIKFVANVTAQVQDS 277
                  556666666777777777777666213455666899*********************.7777776.567889***********99999999996555.999988888777776666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 1396.15
//
Query:       MMETSP1174-20130828|14536_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1174-20130828|14538_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.48
# Mc/sec: 1432.63
//
Query:       MMETSP1174-20130828|14539_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|14540_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 631.86
//
Query:       MMETSP1174-20130828|14537_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.75
# Mc/sec: 1615.55
//
Query:       MMETSP1174-20130828|14541_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-08   30.1   3.5    0.00055   17.2   0.3    2.2  2  TIGR00900 2A0121: H+ Antiporter protein


Domain annotation for each model (and alignments):
>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.3e-07   0.00055      79     146 ..       3      71 ..       1      77 [. 0.91
   2 !   13.6   0.1   1.7e-06    0.0069     183     324 ..     137     282 ..     131     291 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.3e-07
    TIGR00900  79 avlpfvallg.leiwmvlvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgi 146
                  +++ ++ + + l+  +v+    +l+i +     a+sa++  +vp e l+ra s   ++++l e+ +P +
  MMETSP1174-20130828|14541_1   3 FIVAVFSFFDwLKTDHVYLGFAVLQITSRLEESARSALVGVVVPAELLPRAVSFITILSDLGEVASPFL 71 
                  556666666778*******************************************************65 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.7e-06
    TIGR00900 183 aaseeeelseavlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskv..lrrs..svevg...vvlaafglGallGalllg...llgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtl 324
                  a++ +++ls + ++ + +G++f+l  +lL  l  l+  ++++       l+p+++     l+r+   +++g   v+++a  +Ga+lG+l++    + + y  r +++    l+ g+  +  g + + + l ++  a  G ++++ +++  t+
  MMETSP1174-20130828|14541_1 137 AREANSSLS-SKYASLIDGVRFILGHPLLPGLYSLDWGMTALTFYRE--LFPVFVARWftLNRPraITDAGavaVFTSANYAGAVLGGLVTLglqKWSPYYGRQVVVA--TLLYGIGCIAFGSSRS-FILGAIIVAWCGGADAVGATMRSTV 282
                  455677888.9999***********************9999987777..*****999955444322344440004555555666666655434445555555555544..4777777777777776.6665555555666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.54
# Mc/sec: 716.16
//
Query:       MMETSP1174-20130828|14543_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    8.5   3.0       0.13    8.5   2.1    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.16    8.5   7.7       0.16    8.6   5.3    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
       0.22    9.1   7.3       0.25    8.9   5.1    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.1   9.2e-05      0.13     333     396 ..      73     133 ..      35     143 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 9.2e-05
    TIGR02442 333 akpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkl 396
                  ++p+ee+ d++ e+e+  ++++++++++++d +e+d+ +e e+e+e a+e + +p+ ++f+++l
  MMETSP1174-20130828|14543_1  73 PPPEEEPSDDE-EEEE--ETSEQAPTQEAEDGEEKDPVNEPEPEPEPAPEPEPAPEPDVFHPDL 133
                  33333333333.2222..2233345556666666666666666666666666666666666655 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.3   0.00011      0.16     207     252 ..      81     125 ..      24     140 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00011
    TIGR02927 207 edepkeeekpekseakseekpeaaepkaekkeepkpepkaeekapa 252
                  +de +eee+ e++ ++ +e  e  +p  e+++ep+p+p+ e +ap+
  MMETSP1174-20130828|14543_1  81 DDEEEEEETSEQAPTQEAEDGEEKDPVNEPEPEPEPAPEPE-PAPE 125
                  23333333333222222222222222223333333333322.3333 PP

>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.1   0.00018      0.25     120     225 ..      23     127 ..       5     142 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00018
    TIGR03354 120 tlvtaalqqvsseaseedlddslteagegaaprpapqaa.....sldPl.kaldqepasaadlddgalsaelaeevaealpadlasidae.stlepelaplpaaqpapapqeq 225
                   ++t  lq++++e+ + + ++ l  +g++  p+p p+++      ++P+ ++ ++ep+  +        +e +e+ ++a ++++++  ++ ++ epe++p+pa++p+pap+++
  MMETSP1174-20130828|14543_1  23 GTATICLQDMLEEDHDVNEKFVLVLNGPKCFPEPNPSTItvfvtYQPPVrPPPEEEPSDDE--------EEEEETSEQAPTQEAEDGEEKdPVNEPEPEPEPAPEPEPAPEPD 127
                  4566778888888888888888888999999999988766777533333122222222222........22222222233344444444446666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|14544_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|14546_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|14548_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1145.01
//
Query:       MMETSP1174-20130828|14550_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.67
# Mc/sec: 425.52
//
Query:       MMETSP1174-20130828|14547_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 595.11
//
Query:       MMETSP1174-20130828|14553_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 608.85
//
Query:       MMETSP1174-20130828|14555_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-26   89.6   0.0    3.8e-26   89.3   0.0    1.1  1  TIGR00037 eIF_5A: translation initiation factor eIF-5A
    2.6e-09   34.9   0.0    3.7e-09   34.4   0.0    1.2  1  TIGR00038 efp: translation elongation factor P
    2.8e-05   22.2   0.0    3.1e-05   22.0   0.0    1.1  1  TIGR02178 yeiP: elongation factor P-like protein YeiP


Domain annotation for each model (and alignments):
>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   2.8e-29   3.8e-26       4     129 ..      23     161 ..      20     162 .. 0.91

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 2.8e-29
    TIGR00037   4 kkqvevkaLrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaidggvvqlmdleteetlevkiP.......eelkdsleegve......veyiealGeekiirv 129
                  + +++   ++kggy++++++pck+ +i +skpGkhG++k r+ a +if++ k+e+  P+ + v vP +      v+ i+gg+++lmd ++  + ++ +P       eel++ ++++ e      v+++ a  +e+i++ 
  MMETSP1174-20130828|14555_1  23 TIPMKAGHVKKGGYIMMNKRPCKVSEIQISKPGKHGSSKCRIFAKEIFTGLKHEDTMPSHETVSVPSITLTDFSVIHIEGGFLSLMDDHGLVREDLALPnypscyaEELEEFIKHAEEtgvdvrVTVLGACSHEQIMSH 161
                  778999******************************************************************************************9985556655677777777777898888999999999888875 PP

>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.7e-12   3.7e-09       2      84 ..      27     110 ..      26     123 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.7e-12
    TIGR00038   2 sandlrkGlvieldgelyvvlefehvkpGk.gqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdk 84 
                  +a  ++kG  i++++++++v e++++kpGk g++  r+  k++ tg + e t+ s e+v   +++ ++++ +  +g  + +md+
  MMETSP1174-20130828|14555_1  27 KAGHVKKGGYIMMNKRPCKVSEIQISKPGKhGSSKCRIFAKEIFTGLKHEDTMPSHETVSVPSITLTDFSVIHIEGGFLSLMDD 110
                  56789************************8355699**********************************************97 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08   3.1e-05       1      86 [.      27     111 ..      27     153 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.3e-08
    TIGR02178   1 kaselkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldee 86 
                  ka  +kkG  +  n +  ++ +i++s P+  G++k  ++  +++ tG+k e+   + + +    ++  + s  +++G    ++d++
  MMETSP1174-20130828|14555_1  27 KAGHVKKGGYIMMNKRPCKVSEIQISKPGKHGSSK-CRIFAKEIFTGLKHEDTMPSHETVSVPSITLTDFSVIHIEGGFLSLMDDH 111
                  7899************************9888776.69999*******************99999999999999999888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 688.82
//
Query:       MMETSP1174-20130828|14556_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   13.9   0.0     0.0094   13.2   0.0    1.2  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.3e-06    0.0094      87     140 ..     191     244 ..     182     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.3e-06
    TIGR03848  87 WtGrelkeLakeeLwkvvqahpsaavfPgGealaevqaravaavreldarleee 140
                  W+ + l  La++ +w+v+     aa  P G al+ +  + v+ +r+  + l ee
  MMETSP1174-20130828|14556_1 191 WQRKGLVVLATDGVWDVMSVSEVAALLPSGKALRRACEQGVSFLRSVAEMLVEE 244
                  999***************************************999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 910.03
//
Query:       MMETSP1174-20130828|14558_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1023.72
//
Query:       MMETSP1174-20130828|14564_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 149.59
//
Query:       MMETSP1174-20130828|14566_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 485.06
//
Query:       MMETSP1174-20130828|14567_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1174-20130828|14569_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.50
# Mc/sec: 213.82
//
Query:       MMETSP1174-20130828|14570_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1060.04
//
Query:       MMETSP1174-20130828|14575_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1370.89
//
Query:       MMETSP1174-20130828|14576_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.3   4.2        6.3    4.5   0.0    4.9  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.042   1.7e+02       7      15 ..     124     132 ..     121     132 .. 0.85
   2 !    4.2   0.0     0.002       8.1       4      15 ..     237     248 ..     236     248 .. 0.90
   3 !    4.5   0.0    0.0015       6.3       3      14 ..     364     375 ..     364     375 .. 0.86
   4 !    4.4   0.0    0.0016       6.8       3      13 ..     377     387 ..     377     387 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.042
    TIGR02167   7 sLtsLDlSn 15 
                   L +LDlS+
  MMETSP1174-20130828|14576_1 124 GLRNLDLSK 132
                  699*****7 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.002
    TIGR02167   4 gCssLtsLDlSn 15 
                  +++sL++LD S+
  MMETSP1174-20130828|14576_1 237 NMTSLEELDFSS 248
                  89*******997 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0015
    TIGR02167   3 sgCssLtsLDlS 14 
                  ++C++L+sL+ S
  MMETSP1174-20130828|14576_1 364 RSCKQLKSLPAS 375
                  58*******966 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0016
    TIGR02167   3 sgCssLtsLDl 13 
                  s+C +L++LD+
  MMETSP1174-20130828|14576_1 377 SECRNLKELDV 387
                  68********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.61
# Mc/sec: 921.76
//
Query:       MMETSP1174-20130828|14578_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1174-20130828|14581_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 959.92
//
Query:       MMETSP1174-20130828|14580_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1082.31
//
Query:       MMETSP1174-20130828|14585_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   13.2   0.1     0.0081   13.1   0.1    1.2  1  TIGR01875 cas_MJ0381: CRISPR-associated autoregulator DevR family


Domain annotation for each model (and alignments):
>> TIGR01875  cas_MJ0381: CRISPR-associated autoregulator DevR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     2e-06    0.0081      23      72 ..      25      76 ..       3      91 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2e-06
    TIGR01875 23 iselkkvrkg.dgs..qvtyvSgealkyalretlkefllfelskaynliksgk 72
                 ++ lk+       +   +  v +++ ++a+++tlk+++ fe +++ + +k++ 
  MMETSP1174-20130828|14585_1 25 VNNLKSSEAEaR-NncNYIPVHDNSHAHAVQDTLKDQEPFEICEKSAYKKFEV 76
                 445555554422.235788899************************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|14584_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1124.04
//
Query:       MMETSP1174-20130828|14583_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.63
# Mc/sec: 938.59
//
Query:       MMETSP1174-20130828|14586_1  [L=763]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 1598.53
//
Query:       MMETSP1174-20130828|14588_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 781.78
//
Query:       MMETSP1174-20130828|14587_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.17s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 1949.67
//
Query:       MMETSP1174-20130828|14589_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 380.88
//
Query:       MMETSP1174-20130828|14590_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 457.84
//
Query:       MMETSP1174-20130828|14591_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 580.75
//
Query:       MMETSP1174-20130828|14594_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 206.03
//
Query:       MMETSP1174-20130828|14595_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 632.64
//
Query:       MMETSP1174-20130828|14597_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 944.23
//
Query:       MMETSP1174-20130828|14599_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-20   69.5   0.0    2.1e-12   45.1   0.0    2.2  2  TIGR02227 sigpep_I_bact: signal peptidase I
      6e-08   30.3   0.0    3.9e-05   21.1   0.0    2.2  2  TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF
    2.9e-07   28.7   0.0    3.7e-05   22.0   0.0    2.2  1  TIGR02754 sod_Ni_protease: nickel-type superoxide dismutase maturation protease


Domain annotation for each model (and alignments):
>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.9e-09   1.4e-05      44      86 ..       3      45 ..       1      54 [. 0.90
   2 !   45.1   0.0   1.5e-15   2.1e-12     119     161 ..      56      98 ..      44      99 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 9.9e-09
    TIGR02227 44 klaygtaepkrgDivvfkapeeekkeyikRviglpGDkveird 86
                 +++ + ++++rgD+v+ k+p++ ++++ kR+ gl+GD+v++++
  MMETSP1174-20130828|14599_1  3 RVTPRLQRFRRGDVVIAKSPTTIDQTVCKRIRGLEGDTVTLSR 45
                 666678999******************************9875 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 1.5e-15
    TIGR02227 119 vkVPegkyfvLGDnrdnslDSRsiGlvkkdeivGkvsivllpl 161
                   k+P+g++++ GDn  ns+DSR++G+v++  i+G+v++ ++pl
  MMETSP1174-20130828|14599_1  56 IKIPKGHVWLEGDNSANSTDSRYYGPVPAALIKGRVALKIWPL 98 
                  68***************************************97 PP

>> TIGR02771  TraF_Ti: conjugative transfer signal peptidase TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00052      0.72      83      99 ..      28      44 ..       9      48 .. 0.85
   2 !   21.1   0.0   2.8e-08   3.9e-05     132     165 ..      57      91 ..      51      96 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00052
    TIGR02771 83 pllKrvlalkGdrvtvr 99
                  + Kr+++l+Gd+vt++
  MMETSP1174-20130828|14599_1 28 TVCKRIRGLEGDTVTLS 44
                 578************96 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.8e-08
    TIGR02771 132 vvpkglllvsdtsp.tSFDsRYfGlisreqvkgvv 165
                   +pkg + ++++++ +S DsRY+G++++  +kg+v
  MMETSP1174-20130828|14599_1  57 KIPKGHVWLEGDNSaNSTDSRYYGPVPAALIKGRV 91 
                  689998888876655*****************998 PP

>> TIGR02754  sod_Ni_protease: nickel-type superoxide dismutase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.7e-08   3.7e-05      55      89 ..      58      92 ..       3      93 .. 0.95

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.7e-08
    TIGR02754 55 vddnglellgdnpkastdsrklGlvskelllGkvl 89
                 + ++ ++l gdn   stdsr +G+v+  l+ G+v 
  MMETSP1174-20130828|14599_1 58 IPKGHVWLEGDNSANSTDSRYYGPVPAALIKGRVA 92
                 567789999***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 574.54
//
Query:       MMETSP1174-20130828|14601_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1170.30
//
Query:       MMETSP1174-20130828|14600_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-12   44.0   0.1    4.1e-12   43.8   0.1    1.0  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    0.00016   19.2   0.6     0.0019   15.8   0.4    2.1  1  TIGR03045 PS_II_C550: cytochrome c-550
     0.0015   16.0   0.1      0.012   13.1   0.0    2.0  2  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1     3e-15   4.1e-12     192     282 ..      19     110 ..       4     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3e-15
    TIGR00782 192 lsskkpkdealaakGkelFadnCvsChgedgkGlqelgapnltddvwly..Ggd.kktivttikkGrigvmPawkkrlseaqikalaayvhslg 282
                  ls+ +p+ +  ++ G  +F++nC++Ch+   + + + +     d++  y  Gg  +++ivt++++G+   mPa++ rls+++i  +aayv+  +
  MMETSP1174-20130828|14600_1  19 LSGSAPALAGDVDGGGLIFSANCAACHAGGNNVIAAEK-TLKKDALVSYlsGGFkAESIVTQVTNGKN-AMPAFGGRLSDEEIDDVAAYVFDQA 110
                  444777778889999************98766666555.333566776754443489*********96.6********************8765 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   1.4e-06    0.0019      50      84 ..      29      63 ..      12     116 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.4e-06
    TIGR03045 50 qvkkgkrlfnsaCatChvgGitktnpnvgLdleaL 84
                 +v+ g  +f ++Ca+Ch+gG      + +L+ +aL
  MMETSP1174-20130828|14600_1 29 DVDGGGLIFSANCAACHAGGNNVIAAEKTLKKDAL 63
                 5778889*************999999999998887 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.5e-06     0.012      56      85 ..      29      58 ..      21      66 .. 0.83
   2 ?    0.9   0.0     0.051        70     130     146 ..      94     110 ..      76     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.5e-06
    TIGR03046 56 dlteGkklfesncknchvGGatlpnPkvsl 85
                 d+  G   f  nc  ch GG ++ + + +l
  MMETSP1174-20130828|14600_1 29 DVDGGGLIFSANCAACHAGGNNVIAAEKTL 58
                 67778889**************98876555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.051
    TIGR03046 130 ledeevenlaafilraa 146
                  l+dee++++aa+++  a
  MMETSP1174-20130828|14600_1  94 LSDEEIDDVAAYVFDQA 110
                  78999******998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|14604_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 493.02
//
Query:       MMETSP1174-20130828|14605_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1174-20130828|14602_1  [L=1110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.79
# Mc/sec: 1854.53
//
Query:       MMETSP1174-20130828|14607_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|14606_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-20   69.7   0.0    2.2e-19   67.7   0.0    1.8  2  TIGR00010 TIGR00010: hydrolase, TatD family


Domain annotation for each model (and alignments):
>> TIGR00010  TIGR00010: hydrolase, TatD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   5.3e-23   2.2e-19      39     202 ..       9     195 ..       2     197 .. 0.82
   2 ?   -1.1   0.2     0.052   2.2e+02       1      12 [.     315     326 ..     315     337 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 5.3e-23
    TIGR00010  39 leelkralelaekyk...nvyaavGvhPldvedktkedikeleklakeeekvvaiGEvGLDyykakekk........kkQkevfeaqlelAeelnlpliiHaRdaeedvleilkeek.skvegvlHcftgdaelakklldlg....fyiSisgivtf........knakelrevvkkiplerLlvEtD 202
                    e +++le+a++ k   ++++ +GvhP++v++++  ++++l++ ++++++   +GE+GL  + ++ +           Q  +f+aql++A el++p  +H+ +a+ ++leil+  +     + +H+f+g+ e  ++ll l     +y+++s +v          k + ++   +k++p erLl+E+D
  MMETSP1174-20130828|14606_1   9 EAEWDHVLETASSEKeacQIVPGLGVHPWQVHSTKPGWLDRLRARLLASPEA-VVGEIGLCKCAQNVRGavakaknwPIQIAAFKAQLAIAAELRRPASVHCVKAQGTLLEILRTADaLPPAIAFHSFSGTNEQVAALLLLPktceLYFGFSHTVNIamggtpgtKGHAKVLSSIKRVPKERLLIESD 195
                  5556667776665554579************************999766664.59*****9999887766777777789************************************987899999**********99999877778866666655543222222228899999***************9 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.052
    TIGR00010   1 liDaHcHLdllk 12 
                  l+D+H H+++++
  MMETSP1174-20130828|14606_1 315 LVDTHNHIHQES 326
                  69******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 947.68
//
Query:       MMETSP1174-20130828|14613_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|14612_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.88
# Mc/sec: 619.45
//
Query:       MMETSP1174-20130828|14614_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.60
# Mc/sec: 1014.12
//
Query:       MMETSP1174-20130828|14617_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|14619_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064   11.2   0.7       0.28    9.1   0.1    1.7  2  TIGR01999 iscU: FeS cluster assembly scaffold IscU


Domain annotation for each model (and alignments):
>> TIGR01999  iscU: FeS cluster assembly scaffold IscU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   6.9e-05      0.28      19      43 ..       5      29 ..       2      39 .. 0.80
   2 ?    0.6   0.0      0.03   1.2e+02      24      46 ..      39      59 ..      32      66 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 6.9e-05
    TIGR01999 19 dkedknvGtglvGapacGdvlklqi 43
                  +e ++vGt +vG pa G++  + +
  MMETSP1174-20130828|14619_1  5 AEERQDVGTRVVGCPAIGNIDGVMV 29
                 57889*************9866555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.03
    TIGR01999 24 nvGtglvGapacGdvlklqikvn 46
                  vGt l Ga     vl++  +++
  MMETSP1174-20130828|14619_1 39 VVGTFLAGAVGVAGVLQI--NLE 59
                 588889888888877654..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 336.36
//
Query:       MMETSP1174-20130828|14620_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 367.09
//
Query:       MMETSP1174-20130828|14622_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|14621_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-97  323.0   0.0    7.9e-97  322.7   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.4e-23   80.2   0.0      7e-12   42.9   0.0    2.9  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.1e-18   62.7   0.4    1.5e-09   35.0   0.0    2.3  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    6.7e-11   39.9   0.0      7e-07   26.6   0.0    2.3  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.4e-09   34.2   0.0    6.7e-06   23.7   0.0    2.8  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00023   17.9   0.0      0.007   13.0   0.0    2.4  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00052   17.6   0.0     0.0011   16.5   0.0    1.6  2  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.7   0.0   1.3e-99   7.9e-97     153     510 .]      30     405 ..       8     405 .. 0.88

  Alignments for each domain:
  == domain 1    score: 322.7 bits;  conditional E-value: 1.3e-99
    TIGR01642 153 llaegskitdlpvlaveqqatrkaRrlyvgniP.peakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdla.tGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatieken.sdvlvtllakalsqsilq.....................iGekptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykkgdy 510
                   l++g  i+   v + + q tr+aRrlyvg+i   e +e  + ++fnd++     +k++++k+v++v+in +++Faf+E+r++e +t +++ld+i +++vslkirRp+dY+P+      +s + +++nl a    ++s tv ds++ ++ig+LP++l+  qv eL++ FG Lk+F l Kd + + ++KGy+Fce+ d+  td A+++LnG+++gdk L+++    g    +   +  s  l+   a+a     lq                     +  ++++vv L+n+v aedl dd+eYe++++d++ee+ +yG+l ++ +Prp      +  +GK +ley+  ++a  A  +lnGrkF++ vv + f se+ky+++++
  MMETSP1174-20130828|14621_1  30 SLVPGAGIAGGFVSPAN-QQTRHARRLYVGGIAgLELNETGLEEYFNDVIYKALVEKPPEAKQVLNVYINAQRHFAFVELRSIELTTACMQLDGIQMNGVSLKIRRPNDYNPSV---VPPSRELPQLNLTAL--GMVSSTVHDSPHNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANnESNNKGYCFCEFADPALTDTAVKGLNGLQMGDKSLTARISHSGPDGGMKGISLtSSGLINGSASATAAAALQmalgrapnlaltnmlqgpgdtVPVTTSRVVVLMNMVSAEDLEDDQEYEDLVNDIREECARYGNLASVAVPRPGDPGTASTAIGKAYLEYSTKEDAILAAGKLNGRKFGGAVVQTEFISEEKYAEKNF 405
                  46888888888887665.558***********73699**************************************************************************998...77999********99..678999****************************************8625789************************************9998776644332223344444444444444444556666677888889777666789**********************************************999999********************************************99876 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   8.1e-12   4.8e-09     114     288 ..      47     238 ..      40     249 .. 0.77
   2 !   42.9   0.0   1.2e-14     7e-12     387     495 ..     292     402 ..     237     406 .] 0.70

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 8.1e-12
    TIGR01622 114 eeeRDartvfvlqla.lklreRdlkEFFskv......gkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsg.........dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpet.GrskGyGFiqFsdaeeakeAleklNGlelAG 288
                  ++ R ar  +v  +a l l+e  l+E+F++v       k  +++ + +   +  +  a+vE    e  ++ ++l G ++ gv ++++  +      +  ++el+                +++ +++G+l + +t  ++ ++ ++FG +++  l kD +     kGy F +F d   +  A + lNGl++  
  MMETSP1174-20130828|14621_1  47 QQTRHARRLYVGGIAgLELNETGLEEYFNDViykalvEKPPEAKQVLNVYINAQRHFAFVELRSIELTTACMQLDGIQMNGVSLKIRRPNDYNPSVVPPSRELPQlnltalgmvSSTVHDSPHNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANNeSNNKGYCFCEFADPALTDTAVKGLNGLQMGD 238
                  566666666666665467788888888887622211124457888888888888999999999999999999999999999999999877666666666666665555555444222234789**********************************8752578************************9865 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 1.2e-14
    TIGR01622 387 vlkalaeasfvpsevnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdkk.......nsaGkvYlkfdsveaalaavkalngRyFagklitAafvvkdvysk 495
                  +l+    +  vp+    +s+ +vL Nm +++  e+ +  +++ +D++eEc ++g+   + v  +        + Gk Yl ++  e+a+ a   lngR F+g +++  f++++ y +
  MMETSP1174-20130828|14621_1 292 MLQGPGDT--VPV---TTSRVVVLMNMVSAEDLEDDQEYEDLVNDIREECARYGNLASVAVPRPgdpgtasTAIGKAYLEYSTKEDAILAAGKLNGRKFGGAVVQTEFISEEKYAE 402
                  33333333..333...57999*********8777777779****************9999965322222215679************************************99976 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1     1e-09   5.9e-07     147     307 ..     101     278 ..      94     305 .. 0.65
   2 !   35.0   0.0   2.5e-12   1.5e-09     509     595 ..     304     394 ..     298     404 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1e-09
    TIGR01645 147 kgfafveevPeaallaleqmngallGGrnlkvg...............rPs.nlpqaqpiidevqeeakk..fnrivasvhpdlseedlksvfeafGeivkcklaraptl.rkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal...lqPatvsalPaaaavaaaaatak 307
                  + fafve        a  q++g  + G  lk+                +P+ nl  a   + +v    +    n  +  +   l+   +  + +afG +++ +la+++    + kG+ f ef++   ++ a+ ++n + +G + l    +   Pd     +   t+s+l    a a+aaa+ +
  MMETSP1174-20130828|14621_1 101 RHFAFVELRSIELTTACMQLDGIQMNGVSLKIRrpndynpsvvppsreLPQlNLT-A---LGMVSSTVHDspHNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANNeSNNKGYCFCEFADPALTDTAVKGLNGLQMGDKSLTARISHSGPDGGmkgI-SLTSSGLINGSASATAAAALQ 278
                  6799999555555667778888888888888876666666666544444432222.2...333333322211344688888899999999****************98761578*****************************998888888888762423.344555544444444443322 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 2.5e-12
    TIGR01645 509 esrvivlrnmvtPkdide.....tlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvaev 595
                   srv+vl nmv+ +d+++     +l ++ireec+++g +  v +    +     +  + k ++e+s+  ++  a   l+Gr fgG  v++e 
  MMETSP1174-20130828|14621_1 304 TSRVVVLMNMVSAEDLEDdqeyeDLVNDIREECARYGNLASVAVPRPGDP-GTASTAIGKAYLEYSTKEDAILAAGKLNGRKFGGAVVQTEF 394
                  79**************861222256688***********99998776555.45577899*****************************9996 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.2e-09     7e-07      89     159 ..     169     241 ..     162     247 .. 0.90
   2 !   10.8   0.0   6.9e-05     0.041     194     247 ..     331     388 ..     323     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.2e-09
    TIGR01628  89 gNifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkS..kgYgfvhfedeesAkeAieklNgvllndkev 159
                   Nif+  L+  ++   ++++ ++fG++ s  +a d + +S  kgY f +f d    + A++ lNg++++dk  
  MMETSP1174-20130828|14621_1 169 HNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANNESnnKGYCFCEFADPALTDTAVKGLNGLQMGDKSL 241
                  5999999******999****************999888776689************************99976 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 6.9e-05
    TIGR01628 194 klrelFakfGeitSaivkk..d..eknrkrgfafvnyekaedAkkAveelngkkitla 247
                   +re  a++G++ S++v +  d   +  + g a+++y ++edA  A+ +lng+k++ a
  MMETSP1174-20130828|14621_1 331 DIREECARYGNLASVAVPRpgDpgTASTAIGKAYLEYSTKEDAILAAGKLNGRKFGGA 388
                  589999***********9833311344556889*********************9844 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.3   1.8e+02      78     111 ..      40      75 ..      17     155 .. 0.66
   2 !   23.7   0.0   1.1e-08   6.7e-06       2      97 ..     167     264 ..     166     274 .. 0.80
   3 !    6.9   0.0    0.0015       0.9     291     349 ..     338     399 ..     266     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.3
    TIGR01661  78 syarPssdsikga.nlyvsGlPk.tmtqkeleslfs 111
                   +  P++++ + a  lyv G+   ++    le+ f+
  MMETSP1174-20130828|14621_1  40 GFVSPANQQTRHArRLYVGGIAGlELNETGLEEYFN 75 
                  566777777776634777777532455555555554 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.1e-08
    TIGR01661   2 sktnlivnylPqtmtqeeirslftsiGeiescklvrdkvt.GqslGyGfvnyvreedaekavnslnGlrlqnk..tikvsyarPssdsikganlyvsGl 97 
                  s  n+ +  lP  +t  ++  l  ++G + s  l +d  +     Gy f ++ ++  ++ av+ lnGl++ +k  t ++s++ P    +kg  l  sGl
  MMETSP1174-20130828|14621_1 167 SPHNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANNeSNNKGYCFCEFADPALTDTAVKGLNGLQMGDKslTARISHSGPD-GGMKGISLTSSGL 264
                  5568889999999999999999999999999999999765267889999999999999999999999999988334456666664.3578888888887 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0015
    TIGR01661 291 pfGavqsvkiir..dltt.nkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnka 349
                  ++G + sv + r  d+ t     G +++  +  ++a+la   lnG ++g+ v+q  f ++++
  MMETSP1174-20130828|14621_1 338 RYGNLASVAVPRpgDPGTaSTAIGKAYLEYSTKEDAILAAGKLNGRKFGGAVVQTEFISEEK 399
                  56667777776644554414567999999999**********************99998765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         2   1.2e+03     269     300 ..     101     131 ..      96     133 .. 0.67
   2 !   13.0   0.0   1.2e-05     0.007      60     122 ..     170     234 ..     161     243 .. 0.90
   3 ?    1.9   0.0     0.027        16     272     299 ..     363     390 ..     359     400 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2
    TIGR01648 269 rdyafvhfedredavkamdelnGkeleGseie 300
                  r +afv + + e +   m +l+G +++G ++ 
  MMETSP1174-20130828|14621_1 101 RHFAFVELRSIELTTACM-QLDGIQMNGVSLK 131
                  667888887777665555.5777777776665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.2e-05
    TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd..ldGknrGyafvtfcnkeeakeavkelnny 122
                  ++f+G +P  l   +++ l++  G +  + l  d   + +n+Gy f  f++   +  avk ln  
  MMETSP1174-20130828|14621_1 170 NIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDanNESNNKGYCFCEFADPALTDTAVKGLNGL 234
                  79*******************************9555689********************99965 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.027
    TIGR01648 272 afvhfedredavkamdelnGkeleGsei 299
                  a++ ++ +eda+ a  +lnG+++ G  +
  MMETSP1174-20130828|14621_1 363 AYLEYSTKEDAILAAGKLNGRKFGGAVV 390
                  88999*****************999876 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-06    0.0011     100     188 ..     161     252 ..     144     332 .. 0.84
   2 ?   -3.2   0.0       1.9   1.1e+03     148     171 ..     359     382 ..     339     386 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.8e-06
    TIGR01659 100 dndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdykt.gysfgyafvdfaseadsqraikslngitvrnkrl..kvsyarpgg 188
                  +   + s  n+ +  lp  +t  ++  l+++ g + +  + +d        gy+f +fa  a +  a+k lng+ + +k l  ++s++ p g
  MMETSP1174-20130828|14621_1 161 SSTVHDSPHNIFIGGLPYHLTGPQVMELIQAFGTLKSFHLAKDANNeSNNKGYCFCEFADPALTDTAVKGLNGLQMGDKSLtaRISHSGPDG 252
                  45566788999********************************87625678***************************99833567777755 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.9
    TIGR01659 148 sfgyafvdfaseadsqraikslng 171
                  + g a+++++++ d+  a  +lng
  MMETSP1174-20130828|14621_1 359 AIGKAYLEYSTKEDAILAAGKLNG 382
                  457777777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|14623_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   31.4   0.0    4.9e-08   30.9   0.0    1.4  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    1.7e-06   25.6   0.0    2.5e-06   25.0   0.0    1.3  1  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    8.7e-06   23.2   0.1    1.6e-05   22.3   0.1    1.4  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    0.00013   19.3   0.0    0.00021   18.6   0.0    1.3  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    0.00056   17.3   0.0    0.00089   16.7   0.0    1.2  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
     0.0042   15.0   0.1      0.012   13.6   0.0    1.7  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0055   14.3   0.0     0.0095   13.5   0.0    1.3  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
     0.0081   13.3   0.0      0.013   12.7   0.0    1.2  1  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.018   12.4   0.0    1.2  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family


Domain annotation for each model (and alignments):
>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.1e-10   4.9e-08     199     246 .]     175     225 ..      45     225 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.1e-10
    TIGR01460 199 spalykaaeellkarakrr...kvlmvGDnlrtDvlgAkeaGldslLvltG 246
                  ++++++ a +ll ++  +    k++mvGD++ tD++++ e+G+ ++Lv +G
  MMETSP1174-20130828|14623_1 175 KEWMVNSAVRLLCKQGHSGdfnKIVMVGDSFCTDIRAGVECGMRTCLVGSG 225
                  56777777777777777667889**************************99 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.4e-09   2.5e-06     194     227 ..     194     227 ..      99     239 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 5.4e-09
    TIGR01457 194 ekeetllvGdnyatdilaGidaGidtllvhtGvt 227
                  + +++++vGd + tdi+aG++ G+ t lv +G+ 
  MMETSP1174-20130828|14623_1 194 DFNKIVMVGDSFCTDIRAGVECGMRTCLVGSGID 227
                  45789*************************9985 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   3.5e-08   1.6e-05     218     253 ..     194     229 ..     178     241 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.5e-08
    TIGR01452 218 dPartlmvGdrletdilfGkdgGlktvlvlsGvsrl 253
                  d ++++mvGd   tdi  G ++G++t lv sG+  +
  MMETSP1174-20130828|14623_1 194 DFNKIVMVGDSFCTDIRAGVECGMRTCLVGSGIDSV 229
                  5689****************************9865 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.6e-07   0.00021     206     241 ..     188     223 ..     172     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.6e-07
    TIGR01459 206 keleerekrrvllvGDslvtDiaganavgidtalvl 241
                  k+    + +++++vGDs+ tDi ++   g+ t lv+
  MMETSP1174-20130828|14623_1 188 KQGHSGDFNKIVMVGDSFCTDIRAGVECGMRTCLVG 223
                  555566779*************************97 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.9e-06   0.00089     109     141 ..     196     228 ..     181     236 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.9e-06
    TIGR01668 109 eqvvvvGDrlfTDvllgnrnGsltilveplvhp 141
                  +++v+vGD+  TD+ +g   G++t lv +++ +
  MMETSP1174-20130828|14623_1 196 NKIVMVGDSFCTDIRAGVECGMRTCLVGSGIDS 228
                  579************************998866 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.7   1.7e+03      94     117 ..      30      52 ..      30      62 .. 0.75
   2 !   13.6   0.0   2.5e-05     0.012     101     138 ..     185     222 ..     174     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.7
    TIGR01662  94 pktgmleealkrlneidakesvvv 117
                  p++++++++l++ n ++  +s+ +
  MMETSP1174-20130828|14623_1  30 PSAENWRSLLRQCN-ASLVDSWTI 52 
                  77889999999997.777776655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 2.5e-05
    TIGR01662 101 ealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                   ++k+    d++++v+vGD   tD+ a+  +G++t lv
  MMETSP1174-20130828|14623_1 185 LLCKQGHSGDFNKIVMVGDSFCTDIRAGVECGMRTCLV 222
                  556666567899*******999************9876 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.1e-05    0.0095     168     197 ..     196     225 ..     193     238 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.1e-05
    TIGR02253 168 eeavmvGDrlekDikGaknlglktvwinrg 197
                  ++ vmvGD+  +Di+ + + g+ t ++  g
  MMETSP1174-20130828|14623_1 196 NKIVMVGDSFCTDIRAGVECGMRTCLVGSG 225
                  678********************9877655 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.8e-05     0.013     197     226 ..     196     225 ..     180     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.8e-05
    TIGR01458 197 eeavmiGddlvddvGGaqavGmrgvqvrtG 226
                  +++vm+Gd    d+    ++Gmr+ +v +G
  MMETSP1174-20130828|14623_1 196 NKIVMVGDSFCTDIRAGVECGMRTCLVGSG 225
                  78**********************999877 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05     0.018     171     201 ..     197     227 ..     191     236 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.9e-05
    TIGR02254 171 evlmvGDsleaDikGaanaGldtvwlnpdrk 201
                  + +mvGDs+ +Di+ +   G+ t+++ +  +
  MMETSP1174-20130828|14623_1 197 KIVMVGDSFCTDIRAGVECGMRTCLVGSGID 227
                  689**********************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1418.88
//
Query:       MMETSP1174-20130828|14625_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.0   0.0     0.0038   13.9   0.0    1.1  1  TIGR01213 TIGR01213: TIGR01213 family protein


Domain annotation for each model (and alignments):
>> TIGR01213  TIGR01213: TIGR01213 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   9.3e-07    0.0038      53     149 ..      40     136 ..      22     174 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.3e-07
    TIGR01213  53 eenCevCegiferldelldlvaekvedyefdtflvGtrlpkevaele.eeikkelGlagesikkelnRelGk.llakrtgkevdkerPdivvlveveae 149
                  +  C++Ce  ++r++el+++  +k + +  ++f v   l    +  e ++ +k+l    e++++   R l   + ++r  k+ +ke+Pd+ +l +v ++
  MMETSP1174-20130828|14625_1  40 TATCSICEKSMRRIAELAKELGNKKASA--ENFAVAIDLYCRGEYDElKTPEKQLCYYMEPLQSLASRVLAMgMTVQRICKKLSKENPDVCALADVAKK 136
                  568**************99988875555..55666665554444444133455666668*********98752678999**************999554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 705.20
//
Query:       MMETSP1174-20130828|14628_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-16   55.9   0.0    2.8e-08   31.6   0.0    2.3  2  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
    6.2e-09   33.9   0.0    6.7e-08   30.6   0.0    2.1  1  TIGR00451 unchar_dom_2: uncharacterized domain 2


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.2e-08   2.4e-05      55     100 ..      74     119 ..      55     124 .. 0.86
   2 !   31.6   0.0   1.4e-11   2.8e-08      97     154 .]     135     195 ..     133     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.2e-08
    TIGR03684  55 deeliptlklllelklekkvvvVDeGAvkfiinGAdvmapGivevd 100
                   ++lipt ++l+      + + V +G  k++  GAd+++pG+v  d
  MMETSP1174-20130828|14628_1  74 VDQLIPTCYALQTAPRMLRHTRVYSGVEKYLFRGADLFIPGVVRPD 119
                  689***************************************9865 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 1.4e-11
    TIGR03684  97 vevdeeikegdivvvveekhrkplavgvalmdaeeiv...eekkGkavknlhhvgDkiwel 154
                  v + e++++gd+ +v+      p+avg+ +m++ ++v   ++++G av+ lh+ gD +w++
  MMETSP1174-20130828|14628_1 135 VLFGETFQKGDLCAVLPGDTWAPVAVGRFVMSSDDMVemvSSSQGVAVEVLHYTGDPLWNI 195
                  667789**********8888************998874447799***************96 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   3.3e-11   6.7e-08      13     107 .]      74     190 ..      58     190 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 3.3e-11
    TIGR00451  13 fdkvilslkgakklkeekklvkvdegavkFllngadvlkPGiveadedik...................ekdvvvvvdenkdralavGialvsgeeikev...ekGkavkvihhikD 107
                   d++i++ + ++  +   +  +v +g+ k+l  gad++ PG+v  d+  +                   ++d   v   +   ++avG  ++s+++++e+    +G av+v+h+ +D
  MMETSP1174-20130828|14628_1  74 VDQLIPTCYALQTAPRMLRHTRVYSGVEKYLFRGADLFIPGVVRPDNLQDtclksgktwpvvlfgetfqKGDLCAVLPGDTWAPVAVGRFVMSSDDMVEMvssSQGVAVEVLHYTGD 190
                  579999999999999999999**********************98754447888**************99********999**************9887644378*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1000.56
//
Query:       MMETSP1174-20130828|14631_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|14626_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1330.59
//
Query:       MMETSP1174-20130828|14632_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1174-20130828|14629_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 532.08
//
Query:       MMETSP1174-20130828|14634_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.2   0.0      0.042   11.2   0.0    1.4  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.36   1.5e+03      84     101 ..     102     119 ..      94     124 .. 0.71
   2 ?   11.2   0.0     1e-05     0.042      34      83 ..     206     255 ..     194     270 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.36
    TIGR03420  84 vlegleqaelvalDdvea 101
                  v  + e+a+lva D+ ++
  MMETSP1174-20130828|14634_1 102 VNRTSESAQLVATDQHHH 119
                  566778888888887665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1e-05
    TIGR03420  34 eakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqllve 83 
                  +a ++++ ylw e+++G+  LL+A+ ++ +++ +++ +  +k  ++++++
  MMETSP1174-20130828|14634_1 206 DAADGQSQYLWVETSCGRFRLLRACLKRKQSRMSEVGMKAMKVSKSTDMN 255
                  56778999*****************9988877666554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|14640_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|14637_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 1225.61
//
Query:       MMETSP1174-20130828|14642_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.67
# Mc/sec: 470.83
//
Query:       MMETSP1174-20130828|14641_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1174-20130828|14645_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-08   30.3   0.0    8.3e-08   30.1   0.0    1.1  1  TIGR00922 nusG: transcription termination/antitermination factor NusG
    3.5e-06   24.6   0.0    0.00035   18.0   0.0    2.1  2  TIGR01956 NusG_myco: NusG family protein
  ------ inclusion threshold ------
      0.013   13.3   0.1      0.021   12.6   0.1    1.4  1  TIGR01955 RfaH: transcriptional activator RfaH


Domain annotation for each model (and alignments):
>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   6.1e-11   8.3e-08      56     137 ..       2      93 ..       1      95 [] 0.83

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 6.1e-11
    TIGR00922  56 ifPgYilikvdlndkswkavkktpkVvgfvgsgkkpkalke...........eevenilnklkekkekpkskvefekgeqvrvieGpFanftg 137
                  +fPgY++i +++  +  ++++kt  V++f+g++ ++++  +            +v++   +++e++  +  +  f +ge+v+++ G F+  +g
  MMETSP1174-20130828|14645_1   2 LFPGYMFILMRMGPEIHNVLTKTDYVTNFIGNSLTARKGVKgkfvqpvplgdIQVKRFQLTQEEGV-LADPSLGFVVGETVEILAGGFKGEKG 93 
                  7*******************************9888887777999999995555666444444444.66689****************97666 PP

>> TIGR01956  NusG_myco: NusG family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-07   0.00035      84     137 ..       2      64 ..       1      71 [. 0.84
   2 !    5.3   0.0     0.002       2.7     200     223 ..      70      93 ..      63      95 .] 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-07
    TIGR01956  84 kfngYiyikmimeddaWfviRNtegvtGlVGSs........GkgakPiPls.aevekekllkg 137
                   f+gY++i m m  ++  v+  t  vt ++G s        Gk ++P+Pl  ++v++ +l ++
  MMETSP1174-20130828|14645_1   2 LFPGYMFILMRMGPEIHNVLTKTDYVTNFIGNSltarkgvkGKFVQPVPLGdIQVKRFQLTQE 64 
                  59****************************9766665555599999****9788887777665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.002
    TIGR01956 200 dklskfkvgnlVeilvesfkgieg 223
                  d +  f vg++Veil+++fkg++g
  MMETSP1174-20130828|14645_1  70 DPSLGFVVGETVEILAGGFKGEKG 93 
                  5566799*************9887 PP

>> TIGR01955  RfaH: transcriptional activator RfaH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.6e-05     0.021      47     125 ..       2      91 ..       1      95 [] 0.58

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.6e-05
    TIGR01955  47 LFPnYlFieldiekdsvttirstRGvsrlvrfgek.pakvdddlie.....qlkqkelealks..akks...llkkGdkvritdGafagl 125
                  LFP+Y+Fi + +  +  + +  t  v++++    +  + v++++++      +++k  + +++  + +     +  G++v i  G f g 
  MMETSP1174-20130828|14645_1   2 LFPGYMFILMRMGPEIHNVLTKTDYVTNFIGNSLTaRKGVKGKFVQpvplgDIQVKRFQLTQEegVLADpslGFVVGETVEILAGGFKGE 91 
                  9*******9988877777777777777777544330334666666522222333333333222002222333788889999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1174-20130828|14647_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|14646_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 862.33
//
Query:       MMETSP1174-20130828|14654_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.42
# Mc/sec: 700.80
//
Query:       MMETSP1174-20130828|14650_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-47  159.5   0.0    3.2e-47  159.1   0.0    1.2  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
  ------ inclusion threshold ------
      0.049   10.2   0.0      0.071    9.7   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   1.6e-50   3.2e-47       1     304 [.      38     359 ..      38     360 .. 0.86

  Alignments for each domain:
  == domain 1    score: 159.1 bits;  conditional E-value: 1.6e-50
    TIGR00745   1 kiailGaGAvGsllgakLaragadVtllarskqlealnqeG.Lsisklege....eekkvpveaaedpetlskaDlllvtvKayqteealakllpyigkntvvlllqNGlgneeklrellperkvllGvvthgaareepgvvhhagegktkigklpgeekeealeelaellkeagleael..tedilaalwkKllvNaaiNpltalldcknGelleneearelleslidEvvqvar.....................aegveladdlveevlravkrmtaens.sSMlqDllrgrrtEidainGavvklAeklgldaPvlellyallkaleae 304
                  k+ i+GaG +G+++g++La+ g dV+++ rs  l+++  +G L+ ++ e+     +  + ++ ++ dp+ l ++ +++v+vK  +    +a+ l+++g++tvv++lqNG++n+ +lr l+++r v++G+v +g+++ +pg++h+  +g + ++++ ++       ++   l+ agl +el  +  +   +w+Kl+vN+  N+  al+++++    e++++r  +++l +E +++ +                     ++ + l+d l+ + ++  +++t++++ sSM+ Dl + r+tEi  inG++v+l++++g+++P+++l+++l+ a+++e
  MMETSP1174-20130828|14650_1  38 KVGIFGAGCIGQFVGGHLAEYGVDVVFVGRS-VLRRTEGAGtLQCTDMERPefnlNIPCTDLDIHYDPAALHDCNVVFVCVKC-DGIPGAAAALQALGSDTVVISLQNGVENVPRLRRLCGNRVVVAGMVPYGVNEIQPGRFHRGTYGSLAFESTLPQ-------AIHTALSGAGLGVELfpSAAMPSVQWFKLVVNL-GNAPNALVGAPLLHCFESRAYRLAVRELWREGLTACQkagivfppgvaclngkplwavMMVMALPD-LLYHPIARSQKLTDAHYrSSMWADLDQRRSTEIKDINGEIVRLGREHGVSTPANALVVELVLAAQKE 359
                  689***************************6.9999999996777776663433333344455667999999***********.5566666666669**********************************************************765.......46667777777776622667999**********.8888*****************************************************666666665.666666666666655555********************************************99876 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   3.4e-05     0.071       2      84 ..      38     117 ..      37     137 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.4e-05
    TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspikepgleellkkalkkgrlrattdieeaikeadviiitV 84 
                  k+ ++G+G +G  ++ +lae g++Vv+v  +  + ++  +g+ +  + +  e+ + ++    l +  d + a+++++v++++V
  MMETSP1174-20130828|14650_1  38 KVGIFGAGCIGQFVGGHLAEYGVDVVFVGRSVLR-RTEGAGTLQCTDMERPEF-NLNIPCTDLDIHYDPA-ALHDCNVVFVCV 117
                  899************************9755433.222356666666665555.4677888899999998.899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1841.25
//
Query:       MMETSP1174-20130828|14651_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1007.62
//
Query:       MMETSP1174-20130828|14655_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 177.68
//
Query:       MMETSP1174-20130828|14657_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:01.12
# Mc/sec: 787.26
//
Query:       MMETSP1174-20130828|14658_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   16.0   0.0     0.0063   14.6   0.0    1.8  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
  ------ inclusion threshold ------
      0.022   12.5   0.0      0.074   10.8   0.0    1.7  2  TIGR01990 bPGM: beta-phosphoglucomutase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-06    0.0063       2      44 ..     128     170 ..     127     232 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-06
    TIGR02009   2 kaviFDlDGvlvdtaslHakAwkaladklglefdeqineslkG 44 
                  ++ iF lDG +vd  s+ +  w a+a+++ l+   ++++sl+ 
  MMETSP1174-20130828|14658_1 128 HGAIFELDGLVVDMTSVKLLLWSAVAEEFNLRPPSEAQVSLAN 170
                  589**************************99966666665543 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.6e-05     0.074       3      33 ..     129     159 ..     127     170 .. 0.88
   2 ?   -1.9   0.0      0.29     6e+02      87     105 ..     202     220 ..     188     230 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.6e-05
    TIGR01990   3 aviFDlDGvitdtaeyhylawkkladelgie 33 
                  + iF+lDG ++d ++   l w ++a+e ++ 
  MMETSP1174-20130828|14658_1 129 GAIFELDGLVVDMTSVKLLLWSAVAEEFNLR 159
                  78************************98765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.29
    TIGR01990  87 pedvlpgikelleelkkkk 105
                  +e+++p +++l++ l++++
  MMETSP1174-20130828|14658_1 202 QEQIMPQMENLVDRLEEDR 220
                  5689999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|14660_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|14661_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1531.07
//
Query:       MMETSP1174-20130828|14662_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 669.15
//
Query:       MMETSP1174-20130828|14665_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 938.19
//
Query:       MMETSP1174-20130828|14666_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.3   0.0      0.031   11.6   0.0    2.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.7e-06     0.031     106     139 ..       5      35 ..       2     106 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.7e-06
    TIGR01289 106 yelsvatnhlghfllsnllledlkksdekdkrli 139
                   el++a+nhlgh+ll + l +     + +++r++
  MMETSP1174-20130828|14666_1   5 TELTLAANHLGHYLLVKELWDPT---SPASPRIV 35 
                  69*************99888753...33455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 808.43
//
Query:       MMETSP1174-20130828|14668_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 591.20
//
Query:       MMETSP1174-20130828|14669_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 762.13
//
Query:       MMETSP1174-20130828|14671_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 871.93
//
Query:       MMETSP1174-20130828|14670_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.69
# Mc/sec: 868.45
//
Query:       MMETSP1174-20130828|14675_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|14677_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1174-20130828|14673_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.65
# Mc/sec: 1275.22
//
Query:       MMETSP1174-20130828|14678_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|14676_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 1351.45
//
Query:       MMETSP1174-20130828|14679_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|14683_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 303.22
//
Query:       MMETSP1174-20130828|14681_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.9   0.0      0.016   12.7   0.0    2.0  2  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.8e-06     0.016      57     150 ..      65     169 ..      55     200 .. 0.75
   2 ?   -0.8   0.0     0.054   2.2e+02     127     160 ..     240     273 ..     230     284 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.8e-06
    TIGR00095  57 LdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlk..........lskeqatvlndaeralavlakket.vfdiiylDPPfevkl.leailelllenk 150
                  L  + Gs al+   L R  ++++f+e+++ v+  l + ls l+           +    ++  d  + l ++++    +  ++++DPPf+ ++  ++++ l+++++
  MMETSP1174-20130828|14681_1  65 LKYYLGSPALAYLSL-RPQDQALFFERSNLVCDALHQSLSRLDtirppgtverHHASVDVLCSDGYKGLRAATASLShQRGLVLIDPPFQDGSdTDQAVRLIGHLH 169
                  556667777776555.8899**********************9999999955433334455566666665555554424579********9987899999998755 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.054
    TIGR00095 127 iiylDPPfevkl..leailelllenkilnekalivv 160
                  +i + PP++ k+   e +l  l+  ++l+e  + vv
  MMETSP1174-20130828|14681_1 240 VIIVQPPYRLKEnlEESVLPRLG--RLLAESPSDVV 273
                  78899***987632344444433..34555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 862.33
//
Query:       MMETSP1174-20130828|14682_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1016.32
//
Query:       MMETSP1174-20130828|14688_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|14689_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.2   0.1      0.025   10.1   0.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1     6e-06     0.025      76     134 ..       3      60 ..       1      63 [. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6e-06
    TIGR02169  76 eaeVtvtfknddkklpdelevsrrlkvtkegkySyYylNgksvrlseihdlLakagiyp 134
                  +++V++  ++ ++k  de+ +    k++k+    yY +Ng s + +e++++  ka +  
  MMETSP1174-20130828|14689_1   3 TVSVEISIEQCEAK-IDEIDMDGDKKINKSELQMYYNMNGGSLSDEEVDEIFDKAAVDH 60 
                  56788888887777.79***************9*******************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 317.49
//
Query:       MMETSP1174-20130828|14690_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.62
# Mc/sec: 821.74
//
Query:       MMETSP1174-20130828|14692_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   12.4   0.0      0.012   11.9   0.0    1.2  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit


Domain annotation for each model (and alignments):
>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.9e-06     0.012     412     459 ..      99     146 ..      83     153 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.9e-06
    TIGR02346 412 akklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskL 459
                  +k++++++ +++ l+  + k+f e fe+iPr + e+a l ++e+ +++
  MMETSP1174-20130828|14692_1  99 VKNITELSISVQKLQTDSEKRFREMFEMIPRFMQEQALLSSQEIRTTV 146
                  678999999999******************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 585.03
//
Query:       MMETSP1174-20130828|14693_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.2   0.0     0.0019   13.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.6e-07    0.0019       1     131 [.      37     169 ..      37     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.6e-07
    TIGR03903   1 etghkvaikllRedaa..eeerlvaRFrReialCarLshPnivaLlDsG..eaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaL 131
                  et++ vaikl+   +   +++ +  R    +    + +  +i+ Ll+s   +    l+F    y     ++  L+    L       +  q L  l     aGvvh DLk +n+++ +  ++   kv++FG +  
  MMETSP1174-20130828|14693_1  37 ETQALVAIKLINRGSKfkTRAEQELRIFETLGGVSEANDGHIITLLESFnwKGHKCLVFERLSYSLDHVVKSSLNKGIKLGIVR--SIAKQLLPILKLLEIAGVVHADLKLENVLLCNPPTSGACKVVNFGHSLS 169
                  588899999997766556777777777777777778888999999998611455667777777888888888887766666544..5668899999999999*****************************7755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1000.66
//
Query:       MMETSP1174-20130828|14696_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|14698_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.6   0.1      0.022   12.0   0.0    1.2  1  TIGR02147 Fsuc_second: hypothetical protein, TIGR02147


Domain annotation for each model (and alignments):
>> TIGR02147  Fsuc_second: hypothetical protein, TIGR02147
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.5e-06     0.022     205     262 ..       9      67 ..       3      73 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.5e-06
    TIGR02147 205 lakealdalpseerdvstltlgiseeaykeivkkieelrkevlaiaaedeeeer.Vfql 262
                  l +  l ++++++ d  t  +g+ e+++k ++++i++ rk++++++ e+e + + V ++
  MMETSP1174-20130828|14698_1   9 LYTSNLRHVEKHHADTQTAIVGLIEATLKGLRRRIQRQRKRIRKMSGEKERKGEyVLRI 67 
                  667789999999**********************************9877655448876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 800.93
//
Query:       MMETSP1174-20130828|14699_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 531.84
//
Query:       MMETSP1174-20130828|14704_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|14705_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    7.3  44.4       0.19    7.2  28.5    1.9  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        0.3    6.5  45.3        4.5    2.6  31.2    2.3  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  28.5   9.4e-05      0.19     682     930 ..      14     267 ..       3     315 .. 0.68
   2 ?    2.4   1.7    0.0025       5.1     719     784 ..     262     327 ..     238     350 .. 0.42

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 9.4e-05
    TIGR02168 682 eeleeeieeleekiaelekelkelekeleeleeeleklrkeleel...erklselkkelerlekeveqleerlaq..lekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqle 930
                  eel+++ +e+ +k ++ ++++++ e++l+++++e+++  ++  ++   +  ++e  k++  ++k+  +l ++ ++  l++ +++l   ++ele+e++++++ + +  e+  el+++++++k++++ l++  + + +e ++lk++++++e +++++ k++++++++ +el+++ +e+++e+++l++ ++e  ++  + +++++ ++ + +++ ++++   + l ++++  ++    v+ ++ +l++++ + a+  
  MMETSP1174-20130828|14705_1  14 EELKKRQDEFLDKERAYKMRIEDQEDTLSKARQERTQWMDNDPNMqsvRSMHQEILKNVGVVQKRTVRLVKENEDdlLQAFRARLLTVQQELEAERSKTNDGATAWIEKTRELDQDVDRQKSNADRLDRINQTQGSENQRLKQAFSSQEDDRHHVVKQLEQCSQKNQELRKKVDEKRAELAELAHVHKEHMSQTIRERRATAVISRQTSNRVRDRRLSDSPLINTRQLGQSSMASVDSKRSSLSRKNGRSAEEM 267
                  56777777777777777777777777777777777776666555422133334444444444444444433333211455567788888899999999999999999*******************************************************************************99999886677777777777776666666666666555555555555555555555555444433322 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0025
    TIGR02168 719 lrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaee 784
                    +e+ + ++ +++l k +e ++++ +q+++r+aq ++ ++ le + +   +++ ++e+e  ++e 
  MMETSP1174-20130828|14705_1 262 RSAEEMRHDDVIRRLMKMIEIERRHRRQVQDRIAQFNASITPLESSLRRCVDQICKEEPERTQSEW 327
                  222222223334444444444444444444444444444444444444444444444333333322 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  31.2    0.0022       4.5     683     974 ..      12     307 ..       3     334 .. 0.75
   2 ?    0.8   5.3    0.0078        16     398     484 ..     249     334 ..     201     382 .. 0.44

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0022
    TIGR02169 683 rleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklselee.eleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavre.......LeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeeleaLepv 974
                   +eeL++ +++  ++ r  + r+++ ++ ls+a+++  + + +  ++++ ++  +e l+++   ++ + +  +e++++ l++ +a++   +++l++ + + +d  a    ek +e+++ ++ ++ +  r++ + +   +e ++l++   + e+ +++ +++ e++ ++++e++k+++e +a+l+el++  +e+  +          ++ + ++  ++r+  ++ l + ++  +   a++++kr+ l++++ + ++   + + + +   ++ e+  e  + ++v+ ++ + ++ +  Le+ 
  MMETSP1174-20130828|14705_1  12 MEEELKKRQDEFLDKERAYKMRIEDQEDTLSKARQERTQWMDNDPNMQSVRSMHQEILKNVGVVQKRTVRlVKENEDDLLQAFRARLLTVQQELEAERSKTNDG-ATAWIEKTRELDQDVDRQKSNADRLDRINQTQGSENQRLKQAFSSQEDDRHHVVKQLEQCSQKNQELRKKVDEKRAELAELAHVHKEHMSQTIRerratavISRQTSNRVRDRRLSDSPLINTRQLGQSSMASVDSKRSSLSRKNGRSAEEMRHDDVIRRL-MKMIEI--ERRHRRQVQDRIAQFNASITPLESS 307
                  56889999999999999999999999999999999999999999999999999999999999888776661566677778999999999999999999999996.45566778889999999988888888777777777777778888899999999999999999999999999999999999999988876654440111111333444444555555566667777777788888888888888777766666666666654.355555..6788899999999999999999875 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.0078
    TIGR02169 398 lkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklek 484
                  + +++ +l r++ r  ee +  +  +++l + +e  + +  +++++  + ++ i   e  l++  ++  k+e e  + + + ++ ++
  MMETSP1174-20130828|14705_1 249 VDSKRSSLSRKNGRSAEEMR-HDDVIRRLMKMIEIERRHRRQVQDRIAQFNASITPLESSLRRCVDQICKEEPERTQSEWKHSRAKS 334
                  22223333333333222221.112222222222222222233333333333333333333333333333333333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       498  (0.121404); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.96
# Mc/sec: 588.45
//
Query:       MMETSP1174-20130828|14709_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1330.04
//
Query:       MMETSP1174-20130828|14712_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.53
# Mc/sec: 1317.40
//
Query:       MMETSP1174-20130828|14714_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-11   39.7   0.0    2.9e-10   37.4   0.0    1.8  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   7.1e-14   2.9e-10     237     374 ..      25     168 ..       3     182 .. 0.79
   2 ?   -0.2   0.0     0.018        75     382     429 ..     245     295 ..     235     317 .. 0.64

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 7.1e-14
    TIGR03417 237 dlkekditeeqirrarray...faaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.kmsffegsarvPllvaaperleag.rveaavstvdllPtlvelagveleevlp.aldGeslvpllkgkerkdevl 374
                  ++++ +++++ i    + y    a++  vdd i + +e l++ +++d+t +v+++d G  lG+  +   k + +e+  rvP++   p+ l+   +++ ++ ++dl Pt+ e+ag+  +e+ +  +dGe +  ll+g+e++ + +
  MMETSP1174-20130828|14714_1  25 NVDASPMNSTVISWVDHLYrrrLATLQSVDDLIDSFVECLDRHGQMDQTYMVYTADNGYHLGQFAVALdKRQPYETDVRVPFFARGPGILAGVvLTQGTMLNIDLAPTFLEFAGATYAEIEAlGMDGEPMGWLLRGEEASPASI 168
                  5555555555544443333222688889***********************************9987648899***************66554134567889**************999888789**99999999988876655 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.018
    TIGR03417 382 siaPlvalrrGkykfvkceadP..eqlydleadPkelenlae..epehaetl 429
                  ++  + ++ +    + +ce d      +d+++d  +l+nla   +p+ ++++
  MMETSP1174-20130828|14714_1 245 TYGCVRSINST-KDYQYCEWDSgeVEYFDVTEDEWQLHNLAPgmSPDLRAAY 295
                  55555555443.346666666511578*************951144444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1649.86
//
Query:       MMETSP1174-20130828|14717_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-66  219.4  10.1    2.9e-18   64.1   0.3    5.1  5  TIGR00229 sensory_box: PAS domain S-box protein
    5.3e-13   46.1   2.7    9.2e-05   18.9   0.0    4.2  4  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    3.3e-08   30.8   4.9     0.0011   15.9   0.5    3.9  4  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR
    2.3e-05   20.3   0.0    3.4e-05   19.7   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.7e-05   21.2   3.0       0.53    7.1   0.0    3.9  4  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
     0.0014   16.0   0.0     0.0032   14.9   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.011   13.7   0.1        2.1    6.3   0.0    3.3  3  TIGR02373 photo_yellow: photoactive yellow protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   5.6e-14   3.3e-11      26      98 ..       2      79 ..       1      91 [. 0.89
   2 ?    1.6   0.0       0.1        61     104     122 ..     111     129 ..     103     132 .. 0.80
   3 !   58.5   0.1   2.6e-19   1.5e-16       4     124 ..     137     261 ..     135     263 .. 0.90
   4 !   64.1   0.3   4.9e-21   2.9e-18       3     121 ..     266     388 ..     264     392 .. 0.92
   5 !   56.4   0.1   1.2e-18     7e-16      10     123 ..     403     526 ..     396     529 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 5.6e-14
    TIGR00229 26 nilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvsee..rrv..krkdGseiwvevsvs 98
                 +i+++N+a+  +fGY++eel+G+nv  l+ ++  +++++++ r+   ge+++v ++  rrv  ++k+Gs+  + +++s
  MMETSP1174-20130828|14717_1  2 TIIDANPAATTVFGYTHEELVGQNVKVLMNKDVADQHEAYVDRYTNtGEPHIVNQTtgRRVqgRHKNGSTLVLVLTLS 79
                 699***********************************************998765226669999***9998877766 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.1
    TIGR00229 104 ggelgvvgivrDIterkea 122
                   g++ ++++++D+te + +
  MMETSP1174-20130828|14717_1 111 DGVRIFTAVFQDVTEQEHQ 129
                  6899***********8765 PP

  == domain 3    score: 58.5 bits;  conditional E-value: 2.6e-19
    TIGR00229   4 eeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvse..errv..krkdGseiwvevsvspirdaggelgvvgivrDIterkeaee 124
                  e+r   il+s++++ iv d + +i+++N+a+  +fGYs ee++G+nv +l+p e +++++  ++r+++ g  +++ +   rrv   rkdG +  + +++s+       + ++++++D+te + +++
  MMETSP1174-20130828|14717_1 137 ERRTIDILNSMAAPAIVSDTNMIIVDANPAATTVFGYSFEEMMGQNVKILMPIEMSDRHDSFVNRYRKtGDAHIINQavGRRVkgLRKDGAQLDLVLTISESI-IDSSRKFTAVFQDVTEQEHQRQ 261
                  6666689*************************************************************99988876522466699********9999999999.899*************987765 PP

  == domain 4    score: 64.1 bits;  conditional E-value: 4.9e-21
    TIGR00229   3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvse..errv..krkdGseiwvevsvspirdaggelgvvgivrDIterke 121
                  s++r  +il++++++ iv+d   +i++vN a+  +fGY+ eeliG+nv++l+ e+  +++++++ +++e +++++v e   rrv  ++kdG +  + ++vs+ +   g + ++++++D+te + 
  MMETSP1174-20130828|14717_1 266 SQKRTAKILHTMAVPAIVADVTMKIIDVNAAAFTVFGYTDEELIGQNVSILMQEDMANKHDAIVHKYIEtKKSSIVNEatGRRVqgRHKDGFRLELVLTVSETE-FDGMKNFTAVFQDVTEQEH 388
                  6788889**************************************************************99888876511567799******************.9***************876 PP

  == domain 5    score: 56.4 bits;  conditional E-value: 1.2e-18
    TIGR00229  10 ilesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvse..errv..krkdGseiwvevsvspir....d.aggelgvvgivrDIterkeae 123
                  il s+ ++ iv+d+e  i+++N+a+ ++fG+s +eliG+nv +l+pee  + +++ ++r+ + g +++v +   rrv  ++kdGs+  + +++s+ +      ++g + ++++++D+te ++++
  MMETSP1174-20130828|14717_1 403 ILYSMSAPAIVADLEMMIVDTNPAASRVFGFSYKELIGQNVKILMPEEMANNHDAHVSRYTStGNPHIVNQdaGRRVqgRHKDGSRLELVLTLSESTtwaeGdDNGARIFTAVFQDVTEQERQR 526
                  677888899*****************************************************99999987622578899******999888887765222134678999**********99876 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   3.3e-05     0.019      26      99 ..       3      82 ..       1      92 [. 0.64
   2 !    6.8   0.0   0.00077      0.45      19      52 ..     153     186 ..     137     192 .. 0.84
   3 !   18.9   0.0   1.6e-07   9.2e-05      18     120 ..     282     388 ..     265     415 .. 0.71
   4 !    6.1   0.0    0.0012      0.71      19      58 ..     413     452 ..     406     547 .. 0.60

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.3e-05
    TIGR02938 26 ilyanaafseitGyakeeviGknesvlsnrttP..pevyqalwgslaekk...PwaGk.llnrrkdgelylaeltvaPvl 99
                 i+ an a +++ Gy++ee++G+n  vl n+      e y + +    e +     +G+ +  r+k+g   +  lt++ ++
  MMETSP1174-20130828|14717_1  3 IIDANPAATTVFGYTHEELVGQNVKVLMNKDVAdqHEAYVDRYTNTGEPHivnQTTGRrVQGRHKNGSTLVLVLTLSGMV 82
                 7779***********************99876411456665555444322111223330334666666666666666655 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00077
    TIGR02938  19 itdlkanilyanaafseitGyakeeviGknesvl 52 
                  ++d    i+ an a +++ Gy+ ee++G+n  +l
  MMETSP1174-20130828|14717_1 153 VSDTNMIIVDANPAATTVFGYSFEEMMGQNVKIL 186
                  4677778899********************9987 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 1.6e-07
    TIGR02938  18 sitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkP.....waGkll.nrrkdgelylaeltvaPvlneaGetthflGmhrdvtelhe 120
                   ++d    i+ +naa  ++ Gy++ee+iG+n s+l ++   ++    + + +  kk       +G+ +  r+kdg +    ltv+    e      f  + +dvte+ +
  MMETSP1174-20130828|14717_1 282 IVADVTMKIIDVNAAAFTVFGYTDEELIGQNVSILMQEDMANKHDAIVHKYIETKKSsivneATGRRVqGRHKDGFRLELVLTVSET--EFDGMKNFTAVFQDVTEQEH 388
                  47899999***************************9998888777777777766664222223565541699999887777777753..44556678888888887543 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.0012
    TIGR02938  19 itdlkanilyanaafseitGyakeeviGknesvlsnrttP 58 
                  ++dl   i+ +n a s++ G++ +e+iG+n  +l  +   
  MMETSP1174-20130828|14717_1 413 VADLEMMIVDTNPAASRVFGFSYKELIGQNVKILMPEEMA 452
                  6799999999********************8888644433 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0013      0.79     156     204 ..       3      51 ..       1      90 [. 0.75
   2 !   15.9   0.5     2e-06    0.0011     144     297 ..     148     312 ..     121     318 .. 0.70
   3 !    7.5   0.2   0.00069      0.41     145     202 ..     280     336 ..     249     354 .. 0.73
   4 !    6.8   0.0    0.0011      0.64     147     201 ..     411     465 ..     380     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0013
    TIGR02040 156 ileansaAaalLgaegqslvGrelaqeleerereeleellrevratgka 204
                  i++an+aA+++ g ++++lvG+++   +++  +++ e  + + ++tg+ 
  MMETSP1174-20130828|14717_1   3 IIDANPAATTVFGYTHEELVGQNVKVLMNKDVADQHEAYVDRYTNTGEP 51 
                  9***********************9888888888877777777666543 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2e-06
    TIGR02040 144 eavllvdvstgrileansaAaalLgaegqslvGre..laqeleerer.eeleellrevrat...gkaaevrie.laesakellvvvslfrq..dseslfLvrlspvgasa...avedvlsenlaklveeapDaivvvDadGriksaneaFlelvevsskeavrGrt 297
                   a  +v+ ++  i++an+aA+++ g + ++++G++  ++  +e  +r +++ +  r++++    ++a ++r++ l+++ ++l++v  +  +  ds ++f   ++ v +++   ++    ++  ak++++     +v D + +i+ +n+a   +   +  e+++G++
  MMETSP1174-20130828|14717_1 148 AAPAIVSDTNMIIVDANPAATTVFGYSFEEMMGQNvkILMPIEMSDRhDSFVNRYRKTGDAhiiNQAVGRRVKgLRKDGAQLDLVLTISESiiDSSRKFTAVFQDVTEQEhqrQLAALSQKRTAKILHTMAVPAIVADVTMKIIDVNAAAFTVFGYT-DEELIGQN 312
                  44457888999**********************97224455665444267888888888762335677788864677777777766555443399999998888886654111444455555899999887777789**********9988777665.44556665 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00069
    TIGR02040 145 avllvdvstgrileansaAaalLgaegqslvGrelaqeleerereeleellrevratg 202
                  + ++    t +i+++n aA ++ g ++++l+G+++   ++e  +++   ++ +  +t+
  MMETSP1174-20130828|14717_1 280 PAIVA-DVTMKIIDVNAAAFTVFGYTDEELIGQNVSILMQEDMANKHDAIVHKYIETK 336
                  44554.5689***********************9987777766666666555555444 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0011
    TIGR02040 147 llvdvstgrileansaAaalLgaegqslvGrelaqeleerereeleellrevrat 201
                   +v   +  i++ n+aA+++ g + ++l+G+++   ++e+ +++    + + ++t
  MMETSP1174-20130828|14717_1 411 AIVADLEMMIVDTNPAASRVFGFSYKELIGQNVKILMPEEMANNHDAHVSRYTST 465
                  345556788**********************998888887777666666655555 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.8e-08   3.4e-05     402     482 ..     738     818 ..     728     823 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 5.8e-08
    TIGR02917 402 klgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdla 482
                  + +  + a Gd ++ i++Le+ +   p+l  a++lL +++ ++g++dkal+++++  k +p++++++ +l + +++k+d +
  MMETSP1174-20130828|14717_1 738 NDATRQGAAGDMEQTIESLENCLIQCPDLAVAHTLLGIAHGQRGNIDKALSSLQHSWKLNPADPNTFGYLMSNLMKKGDTE 818
                  555555578999999999999999999999999999999999999999999999999999999999999999888888876 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.38   2.2e+02      31      57 ..       6      32 ..       2      58 .. 0.83
   2 !    6.4   0.0    0.0014      0.82       7      55 ..     139     187 ..     134     260 .. 0.87
   3 !    5.4   0.1    0.0029       1.7       6      58 ..     268     320 ..     263     391 .. 0.79
   4 !    7.1   0.0    0.0009      0.53       4      56 ..     396     448 ..     393     475 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.38
    TIGR02966 31 vNkaaekllglkapkdlgqkisnlirs 57
                 +N+aa++++g ++++ +gq+++ l+ +
  MMETSP1174-20130828|14717_1  6 ANPAATTVFGYTHEELVGQNVKVLMNK 32
                 799********999999*999988865 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0014
    TIGR02966   7 rlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnli 55 
                  r  ++l+ ++ + +v d++  i+ +N+aa++++g + ++ +gq+++ l+
  MMETSP1174-20130828|14717_1 139 RTIDILNSMAAPAIVSDTNMIIVDANPAATTVFGYSFEEMMGQNVKILM 187
                  667889999**********************************998765 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0029
    TIGR02966   6 erlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirsp 58 
                  +r +k+l++++ + +v d + +i  vN+aa +++g + ++ +gq++s l+++ 
  MMETSP1174-20130828|14717_1 268 KRTAKILHTMAVPAIVADVTMKIIDVNAAAFTVFGYTDEELIGQNVSILMQED 320
                  677889999******************************999****9998764 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0009
    TIGR02966   4 elerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlir 56 
                  +++r  ++l  +  + +v d e  i+ +N+aa++++g+++++ +gq+++ l+ 
  MMETSP1174-20130828|14717_1 396 QHKRTINILYSMSAPAIVADLEMMIVDTNPAASRVFGFSYKELIGQNVKILMP 448
                  5677888899999**********************************987764 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.4e-06    0.0032      23     100 ..     725     802 ..     711     820 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.4e-06
    TIGR02521  23 kkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  k  +r++ a ++++ a++  ++gd+e+  e+le+ l + p+ a a+  l+++  q g+ +kA  s +++ +l+p++++
  MMETSP1174-20130828|14717_1 725 KFLERSHSALMHLNDATRQGAAGDMEQTIESLENCLIQCPDLAVAHTLLGIAHGQRGNIDKALSSLQHSWKLNPADPN 802
                  5566777788888889999999****************************************************9986 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.15        87      22      61 ..     144     183 ..     133     213 .. 0.74
   2 ?    6.3   0.0    0.0036       2.1      14      61 ..     265     313 ..     255     339 .. 0.87
   3 ?    1.4   0.0      0.12        67      24      61 ..     406     443 ..     391     467 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.15
    TIGR02373  22 ldalafGaiqldesGrilkynkaegelaGrdPekviGknf 61 
                  l+++a  ai  d +  i   n a +++ G + e+++G+n 
  MMETSP1174-20130828|14717_1 144 LNSMAAPAIVSDTNMIIVDANPAATTVFGYSFEEMMGQNV 183
                  5778888999999999999999999999999999999985 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0036
    TIGR02373  14 lakmgdae.ldalafGaiqldesGrilkynkaegelaGrdPekviGknf 61 
                  l+++ +a+ l+++a+ ai  d + +i   n+a  ++ G + e++iG+n 
  MMETSP1174-20130828|14717_1 265 LSQKRTAKiLHTMAVPAIVADVTMKIIDVNAAAFTVFGYTDEELIGQNV 313
                  5566666625899*********************************995 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.12
    TIGR02373  24 alafGaiqldesGrilkynkaegelaGrdPekviGknf 61 
                  +++  ai  d +  i   n a +++ G + +++iG+n 
  MMETSP1174-20130828|14717_1 406 SMSAPAIVADLEMMIVDTNPAASRVFGFSYKELIGQNV 443
                  5667799999999**********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.52
# Mc/sec: 2099.13
//
Query:       MMETSP1174-20130828|14720_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1531.87
//
Query:       MMETSP1174-20130828|14728_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 342.46
//
Query:       MMETSP1174-20130828|14727_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 327.84
//
Query:       MMETSP1174-20130828|14732_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.49
# Mc/sec: 888.91
//
Query:       MMETSP1174-20130828|14735_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|14736_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-124  395.2   0.1    2.8e-09   34.4   0.0   17.1 17  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.024   10.9   0.0      0.051    9.8   0.0    1.5  1  TIGR01307 pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.048        98      26      35 .]       1      10 [.       1      10 [. 0.94
   2 !   22.3   0.0   9.7e-09     2e-05       1      32 [.      11      43 ..      11      46 .. 0.92
   3 !   17.8   0.0   2.8e-07   0.00057       2      35 .]      49      82 ..      48      82 .. 0.97
   4 !   19.2   0.0   9.5e-08    0.0002       1      34 [.      83     116 ..      83     117 .. 0.95
   5 !   19.7   0.0   6.5e-08   0.00013       2      34 ..     119     151 ..     118     152 .. 0.87
   6 !   34.4   0.0   1.4e-12   2.8e-09       1      34 [.     153     186 ..     153     187 .. 0.97
   7 !   13.5   0.0   6.1e-06     0.013       1      35 []     188     223 ..     188     223 .. 0.92
   8 !   20.6   0.0   3.5e-08   7.1e-05       2      34 ..     225     257 ..     224     258 .. 0.95
   9 !   33.8   0.0   2.2e-12   4.5e-09       1      35 []     259     293 ..     259     293 .. 0.97
  10 !   23.5   0.0   4.1e-09   8.3e-06       1      35 []     294     328 ..     294     328 .. 0.97
  11 !   18.1   0.0   2.1e-07   0.00043       1      34 [.     329     362 ..     329     363 .. 0.91
  12 !   27.7   0.0   1.9e-10   3.9e-07       1      35 []     364     398 ..     364     398 .. 0.96
  13 !   21.5   0.0   1.8e-08   3.6e-05       1      35 []     399     434 ..     399     434 .. 0.97
  14 !   19.5   0.0   7.5e-08   0.00015       1      35 []     435     469 ..     435     469 .. 0.95
  15 !   32.7   0.0   5.1e-12     1e-08       1      35 []     470     504 ..     470     504 .. 0.97
  16 !   27.9   0.0   1.7e-10   3.5e-07       1      34 [.     505     538 ..     505     539 .. 0.96
  17 !   17.4   0.0   3.7e-07   0.00077       1      27 [.     540     566 ..     540     567 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.048
    TIGR00756 26 MkergivPda 35
                 Mk+rgi+Pd+
  MMETSP1174-20130828|14736_1  1 MKARGIEPDV 10
                 9*******96 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 9.7e-09
    TIGR00756  1 vtyntlisglckagrv.eeAlelfdeMkergiv 32
                 vt+n++i +++k g++ ++++el+deM+++   
  MMETSP1174-20130828|14736_1 11 VTFNAVITACGKCGSTlDDMFELLDEMRSHSSL 43
                 7***************************98655 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 2.8e-07
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                 +yn+ i ++ +++++++ l lf  M+++g+ P++
  MMETSP1174-20130828|14736_1 49 CYNAAIVACNHWKQWNKSLGLFTAMQDEGVTPNI 82
                 8*******************************95 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 9.5e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++n  +s++   g++++Al+l+ +M +rg+ P+
  MMETSP1174-20130828|14736_1  83 ISFNGALSACKGGGQWRKALQLLSDMPKRGVQPT 116
                  589******************************8 PP

  == domain 5    score: 19.7 bits;  conditional E-value: 6.5e-08
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  + n+++s+++ka+++ee+l++fd  +   + Pd
  MMETSP1174-20130828|14736_1 119 SINVVMSACGKARQWEEVLDIFDHALGGSLLPD 151
                  78********************98777777776 PP

  == domain 6    score: 34.4 bits;  conditional E-value: 1.4e-12
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +t+nt +s++++ag++++ lel+deMk+rgi+P+
  MMETSP1174-20130828|14736_1 153 ITFNTAMSACSHAGKWRKTLELLDEMKRRGIEPT 186
                  69*******************************8 PP

  == domain 7    score: 13.5 bits;  conditional E-value: 6.1e-06
    TIGR00756   1 vtyntlisglcka.grveeAlelfdeMkergivPda 35 
                  ++ynt is+++k  gr+ eA++l+  ++++g++Pd+
  MMETSP1174-20130828|14736_1 188 ISYNTAISACGKGgGRWVEAVKLLMVLEDQGLKPDV 223
                  69**********737*******************96 PP

  == domain 8    score: 20.6 bits;  conditional E-value: 3.5e-08
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  +y++ i ++++ g++++Alel+  M++rg+  +
  MMETSP1174-20130828|14736_1 225 SYTAAITACGNGGQISKALELLGIMQRRGVHAN 257
                  8****************************9887 PP

  == domain 9    score: 33.8 bits;  conditional E-value: 2.2e-12
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++n+ is++ k+gr+e Al+l++eMk+rgi Pd+
  MMETSP1174-20130828|14736_1 259 YSFNAAISACEKEGRWEMALKLLREMKRRGINPDV 293
                  69*******************************96 PP

  == domain 10    score: 23.5 bits;  conditional E-value: 4.1e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v+y++ is++ k ++v+ A++l+deM+++ + P++
  MMETSP1174-20130828|14736_1 294 VSYSAAISACEKGREVDTAIDLLDEMRAERVTPNV 328
                  79*******************************96 PP

  == domain 11    score: 18.1 bits;  conditional E-value: 2.1e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++++ is++ kagr+e+Alel de+ +++ +Pd
  MMETSP1174-20130828|14736_1 329 ISFSAAISACEKAGRWEKALELVDEINASDQRPD 362
                  58999********************988888887 PP

  == domain 12    score: 27.7 bits;  conditional E-value: 1.9e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v++++ is++ k g++e+A++l d+M+++gi Pd+
  MMETSP1174-20130828|14736_1 364 VVFSAAISACEKGGQWEKAIQLHDDMRRMGIAPDV 398
                  68999****************************96 PP

  == domain 13    score: 21.5 bits;  conditional E-value: 1.8e-08
    TIGR00756   1 vtyntlisglckagrveeAlelf.deMkergivPda 35 
                  +++n+++s++ k g+ eeA++++ ++M ++g++Pd+
  MMETSP1174-20130828|14736_1 399 ISFNAVLSACEKGGQCEEAVRVLrNDMPSAGVSPDV 434
                  58********************************96 PP

  == domain 14    score: 19.5 bits;  conditional E-value: 7.5e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v++++ is++ k ++++ Alel++eM+e g++P+a
  MMETSP1174-20130828|14736_1 435 VSFSAAISACDKGKQWKMALELLHEMIEVGLEPNA 469
                  689999***************************96 PP

  == domain 15    score: 32.7 bits;  conditional E-value: 5.1e-12
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  vt+++ is+++k g++e+Al+l++ M e+g++P++
  MMETSP1174-20130828|14736_1 470 VTFSSAISACGKGGQWEKALKLLEYMWEHGVEPNV 504
                  79*******************************96 PP

  == domain 16    score: 27.9 bits;  conditional E-value: 1.7e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++n+ i++++k+ ++e+Al+l+d M+ +g++Pd
  MMETSP1174-20130828|14736_1 505 ICFNAAIDACAKEAQWEKALKLLDVMRLQGVSPD 538
                  58*******************************9 PP

  == domain 17    score: 17.4 bits;  conditional E-value: 3.7e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                  +++nt i+++  +g++eeAl l++eM+
  MMETSP1174-20130828|14736_1 540 ISFNTAIRACETSGQWEEALNLLNEMR 566
                  58************************8 PP

>> TIGR01307  pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.5e-05     0.051      89     147 ..     224     282 ..     192     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.5e-05
    TIGR01307  89 fendalleaidrvkeaekklhllGLlsdGGvhshedhllalvelaakrgiekvvlhlft 147
                   +  a + a+ +  + +k+l llG++   Gvh++   + a ++ ++k+g  ++ l l+ 
  MMETSP1174-20130828|14736_1 224 RSYTAAITACGNGGQISKALELLGIMQRRGVHANVYSFNAAISACEKEGRWEMALKLLR 282
                  455566777777888899*******************************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1983.31
//
Query:       MMETSP1174-20130828|14738_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.8e-218  722.4  11.2   9.2e-218  722.2   7.8    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   5.5e-163  541.5   6.6   6.9e-163  541.1   4.6    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.8e-14   51.6   1.1    1.2e-10   39.1   0.3    2.5  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    1.9e-12   44.7   0.8    1.9e-12   44.7   0.5    2.5  3  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    3.4e-07   27.5   3.9    7.7e-06   23.0   0.3    3.1  2  TIGR01174 ftsA: cell division protein FtsA
    7.6e-06   22.5   0.1    1.7e-05   21.4   0.1    1.5  1  TIGR01312 XylB: xylulokinase


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  722.2   7.8  1.3e-220  9.2e-218       2     595 ..      62     670 ..      61     671 .. 0.93

  Alignments for each domain:
  == domain 1    score: 722.2 bits;  conditional E-value: 1.3e-220
    TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkveve....dkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegid....LskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdakl...saseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkea..gdkleeeekekiekaveelkealke..edveekikakteelekaleklaealy 595
                  +iGidLGtt s+v v++g+  ++ian+eG+rttPs+vaf+++ erlvG++ak q+  np nt++ +krliGrk+e   v++++k+ p+kvv+  + ++++ev+    +k++ peeis+++L k+k++aea+lG++vt+av+tvPayfndaqrqatkdaG+i Glevlri+nePtaaa+ayGldk k d+++lv+d+GGGtfdv++l+++ gvfev++taG+t+LGG+df +++++  + efk+++g +    L+kdk+  +rl +a ++ak eLs+a++++i++ f         +++++l+ra+fe l+++ +++++++v++++kda++   s+ ++d+v+lvGGstriP++q+l+k+ +g ep+k++n de+va Gaaiq+++l+g     v d++LldvtPLsLg+et Ggv+t++iernttiPtk+sq f+t +dnqp v i+v+ Ger++++dn+ lg+f+L+gippaPrGvp++evt+d+danGilsvsa dk++gk+++itit+ ++ ls+++iermvkeae++++ed+ ++++v+arn +++  y+a++tl+e+  + k++ee+keki++ v+   + l++  e++ e+i++k+ el ++++ + ++ly
  MMETSP1174-20130828|14738_1  62 AIGIDLGTTFSCVGVWKGEGVEIIANQEGNRTTPSYVAFTDS-ERLVGDTAKSQTARNPVNTVFDAKRLIGRKFEdpVVQTDMKTWPFKVVKGGDgRAMIEVSykgeKKRFNPEEISSMVLAKMKETAEAKLGHPVTKAVVTVPAYFNDAQRQATKDAGNICGLEVLRIVNEPTAAAIAYGLDK-KGDRTVLVYDMGGGTFDVTLLDIDSGVFEVRATAGNTHLGGEDFTNAVVKAALVEFKRKHGANkaaaLEKDKKGKRRLWQACDRAKQELSTAQKATIEIEFQG------EDFSMSLSRARFEGLCQESFQSSMKAVEQVMKDAGKgdaSKVKVDDVVLVGGSTRIPYLQNLIKKRFGVEPSKEINADEAVAYGAAIQAALLTGMaegkVDDIVLLDVTPLSLGLETAGGVMTRIIERNTTIPTKHSQEFTTYADNQPGVAIQVYEGERSFTKDNHMLGKFQLDGIPPAPRGVPRVEVTYDLDANGILSVSAVDKSSGKSKNITITNdKGRLSSNDIERMVKEAEEFKAEDEANQKRVHARNGLENASYTARSTLDEEpmKGKATEEDKEKIQEIVKTTLDWLDQnlEATVEEIEEKQRELDQVVHPIVSRLY 670
                  59***************************************9.*******************************966699************988766666543333799**************************************************************************.99********************************************************9976544449*******************************9964......56899*****************************863326779**********************************************9997633344********************************************************************************************************************972578********************************************99622677999**********99888776622355567***********999988766 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.1   4.6    1e-165  6.9e-163       1     583 [.      62     668 ..      62     674 .. 0.86

  Alignments for each domain:
  == domain 1    score: 541.1 bits;  conditional E-value: 1e-165
    TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakge..mvrlktaqg..evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldkaseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagle....aelskeekkellkaaraakeaLtdaeevevevklegkdlkaklsreeleelieelvkktleivrralrdag...lkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDm..eaRalaekkveaerilealekalkad..kdLlseeelkaikaalek...lekaleeddaeaikaaiealeeaskefaar 583
                  a+GiDlGtt s v + + + +e++ ++eg+ + ps v +++  +  vG++ak+++a++p nt+  +kRl+Gr  ed  v++ +++ p++++++ ++  m++++ + +  +  P e+s+ +L+k+k+ ae +lg+ +++av+tvPAYF+daqrqatkdA+++ gl+vlR++nePtaAA+AYGldk+ +++++vYD+GGGtFDv +L +++GvFev at+G+++LGG+Df +a++k+ l    +k+g++     e +k+ k+ l +a  +ak++L++a+++++e++ +g+d++++lsr+++e l +e  + ++++v+++++dag    ++ ++++vvlvGGstr+p +++ +++ F+ ep ++++ de vA GAa+qa lL++  + +  d++LlDv+PLsLGlet GG++ +ii RnttiP++++qeFtty D+q ++ai+v  GeR + +d++ L++F+L gipp + G+ r++vt+++Da+G+lsvsa +k++g+ ++i++ +  g Ls ++ie+m+k++ +  +eD   ++R+ a + +e      + +++l+++  k   +ee++++i++ +++     ++  e  +e+i+++ ++l+++ + +++r
  MMETSP1174-20130828|14738_1  62 AIGIDLGTTFSCVGVWKGEGVEIIANQEGNRTTPSYVAFTDS-ERLVGDTAKSQTARNPVNTVFDAKRLIGRKFEDpvVQTDMKTWPFKVVKGGDGraMIEVSYKGEkkRFNPEEISSMVLAKMKETAEAKLGHPVTKAVVTVPAYFNDAQRQATKDAGNICGLEVLRIVNEPTAAAIAYGLDKKGDRTVLVYDMGGGTFDVTLLDIDSGVFEVRATAGNTHLGGEDFTNAVVKAALvefkRKHGANkaaaLEKDKKGKRRLWQACDRAKQELSTAQKATIEIEFQGEDFSMSLSRARFEGLCQESFQSSMKAVEQVMKDAGkgdASKVKVDDVVLVGGSTRIPYLQNLIKKRFGVEPSKEINADEAVAYGAAIQAALLTGMAEGKvdDIVLLDVTPLSLGLETAGGVMTRIIERNTTIPTKHSQEFTTYADNQPGVAIQVYEGERSFTKDNHMLGKFQLDGIPPAPRGVPRVEVTYDLDANGILSVSAVDKSSGKSKNITITNDKGrLSSNDIERMVKEAEEFKAEDEanQKRVHARNGLENASY--TARSTLDEEpmKGKATEEDKEKIQEIVKTtldWLDQNLEATVEEIEEKQRELDQVVHPIVSR 668
                  79**************************************99.99*****************************996678899999****9887751155444433333789*************************************************************************************************************************999888873444432211345677789999*********************************************************97333567789************************************************9765544449*****************************************************************************************************************987644***********986666666511556666666665444..34444443311334444444444444433000333344456777888888888877766665 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.3   1.7e-13   1.2e-10      43     143 ..     178     283 ..     175     342 .. 0.85
   2 !   10.5   0.0    0.0001     0.068     171     222 ..     367     418 ..     355     430 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.7e-13
    TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlknga.....vvdvGGGttGisilkkGkviysadeatGGthl 143
                  + +++++k+++e klG  +tka ++vP   ++ + +++ +  +  Glevl++++ePtaaa +  l++ +     v d+GGGt  +++l+    ++    ++G thl
  MMETSP1174-20130828|14738_1 178 SMVLAKMKETAEAKLGHPVTKAVVTVPAYFNDAQRQATKDAGNICGLEVLRIVNEPTAAAIAYGLDKKGdrtvlVYDMGGGTFDVTLLDIDSGVFEVRATAGNTHL 283
                  57899*******************************************************9999976422333378************999999988888888886 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0001
    TIGR02529 171 vfsvvkPvvekmaeivkkhiekqkvkdlylvGGassfsefedvfekelglev 222
                    s +k v + m +  k    k kv+d+ lvGG++ ++ ++++++k++g+e 
  MMETSP1174-20130828|14738_1 367 FQSSMKAVEQVMKDAGKGDASKVKVDDVVLVGGSTRIPYLQNLIKKRFGVEP 418
                  34679999***************************************99875 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.082        56       4      63 ..      62     115 ..      59     133 .. 0.54
   2 !   44.7   0.5   2.8e-15   1.9e-12      99     323 ..     197     433 ..     174     442 .. 0.79
   3 ?   -2.5   0.3      0.64   4.4e+02     222     277 ..     588     646 ..     570     651 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.082
    TIGR00904   4 dlgidlGtantlvyv.kgkGivlsePsvvavekdkdakaksvlavGkeakemlgktPenik 63 
                   +gidlGt+   v v kg+G+      ++a ++++  ++ s +a+ +++ +++g t ++ +
  MMETSP1174-20130828|14738_1  62 AIGIDLGTTFSCVGVwKGEGVE-----IIANQEGN-RTTPSYVAF-TDSERLVGDTAKSQT 115
                  589*****99988654888873.....33333332.222222222.223333333333333 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 2.8e-15
    TIGR00904  99 pkvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgsmvvdiGGGttevavislg.Givvsks....irvaGdeldeaiikyirrkynlliGertaeki.kieiGsayaeendeeeklevkGrd..lv....tGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsketklpvivaedpllavalGtG 323
                   k +++vP+   + +r+a k++ +  G +   +++ep aaai  +l  +   + +v d+GGGt +v+++ +  G+   ++      ++G+++ +a++k    +++   G + a  + k + G     +  +  k e++  +  ++    +G   +++l+  +     +e+ ++ ++av+++++++    a+ +    +vl GG + +  l++l++k+ +++     ++ +ava G+ 
  MMETSP1174-20130828|14738_1 197 TKAVVTVPAYFNDAQRQATKDAGNICGLEVLRIVNEPTAAAIAYGLDKKGDRTVLVYDMGGGTFDVTLLDIDsGVFEVRAtagnTHLGGEDFTNAVVKAALVEFKRKHGANKAAALeKDKKGKRRLWQACDRAKQELSTAQkaTIeiefQGEDFSMSLSRARFEGLCQESFQSSMKAVEQVMKDAGKGDASKVKVDDVVLVGGSTRIPYLQNLIKKRFGVEPSKEINADEAVAYGAA 433
                  4589*************************99**************************************995377655542222689***********9999999999988776663445555444333333333333222002211115777788899999999999***************************************************998888888888888875 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.64
    TIGR00904 222 deeeklevkGrdlvtGlp..rtleldskevl.ealkepvseiveavkstlektpPelaa 277
                  de ++  v+ r+ ++      + +ld++ ++ +a +e  ++i e vk+tl+  + +l a
  MMETSP1174-20130828|14738_1 588 DEANQKRVHARNGLENASytARSTLDEEPMKgKATEEDKEKIQEIVKTTLDWLDQNLEA 646
                  55555666666655544311445666666552677888888999999999877766655 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.3   1.1e-08   7.7e-06     164     340 ..     216     416 ..     205     428 .. 0.74
   2 ?    1.6   0.1     0.038        26      72     115 ..     544     588 ..     528     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.1e-08
    TIGR01174 164 ekaveraglevdnivlsslAsakavLtedEkelGvvlidiGggttdiavytegsiryt.....kvlpiggnnvtkDlakalktple......eAEki.Kikygs.........aliel.eseeesveipsvgereerelskkelaeiieaRveEileivkqkelkksgl..keela.agivltGGaaqlkgikelaekvfdk 340
                  ++a + +glev +iv ++ A+a+a   +   +  v++ d+Gggt d+++   +s ++          +gg+  t+ + ka  ++++      +A  + K k g+         a +el + ++ ++ei+ +ge+ + +ls+++     ++  +  ++ v+ + +k++g+  +++++   +vl GG +++  +++l++k f  
  MMETSP1174-20130828|14738_1 216 KDAGNICGLEVLRIVNEPTAAAIAYGLDKKGDRTVLVYDMGGGTFDVTLLDIDSGVFEvrataGNTHLGGEDFTNAVVKAALVEFKrkhganKAAALeKDKKGKrrlwqacdrAKQELsTAQKATIEIEFQGEDFSMSLSRARFEGLCQESFQSSMKAVE-QVMKDAGKgdASKVKvDDVVLVGGSTRIPYLQNLIKKRFGV 416
                  556678*******************999999*****************99877655431111146778999999999988877654222222232222334332111111111344446677889**********************************8.777777765555554267******************99975 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.038
    TIGR01174  72 vvslsgahiksqnskgvvaikdk.evtqediervleaakavalpe 115
                  ++s+s    +s +sk +  ++dk  +  +dier++++a+  + ++
  MMETSP1174-20130828|14738_1 544 ILSVSAVDKSSGKSKNITITNDKgRLSSNDIERMVKEAEEFKAED 588
                  6899999999999999999999889*************9877554 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.5e-08   1.7e-05     364     442 ..     354     443 ..     337     454 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.5e-08
    TIGR01312 364 larAvlegvaf.....alrdsldilke.....lkglkikeirliGGGaksevwrqiladilglevvvpe.eeegaalGaAilAaialgek 442
                  l rA +eg+       ++++  +++k+     ++ +k+++++l+GG ++ ++ ++++ + +g+e  ++  ++e++a+GaAi+Aa+ +g++
  MMETSP1174-20130828|14738_1 354 LSRARFEGLCQesfqsSMKAVEQVMKDagkgdASKVKVDDVVLVGGSTRIPYLQNLIKKRFGVEPSKEInADEAVAYGAAIQAALLTGMA 443
                  5555555543220011344444444442111134589999**********************998877659*************998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 1497.32
//
Query:       MMETSP1174-20130828|14739_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-106  346.6   0.0    6.8e-36  120.2   0.0    3.4  3  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    1.7e-28   96.5   0.0    4.9e-09   34.2   0.0    3.3  3  TIGR02181 GRX_bact: glutaredoxin 3
      5e-23   79.0   0.0    1.8e-07   29.1   0.0    3.5  3  TIGR02180 GRX_euk: glutaredoxin
    1.7e-15   54.5   0.0    0.00051   17.8   0.0    3.4  3  TIGR02190 GlrX-dom: glutaredoxin-family domain
    4.9e-12   43.8   0.0    5.5e-11   40.4   0.0    2.6  2  TIGR01068 thioredoxin: thioredoxin
    4.4e-11   40.5   0.0      0.006   14.4   0.0    3.7  4  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    2.6e-10   38.5   0.0      0.061   11.7   0.0    3.4  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    9.2e-05   20.5   0.0    0.00036   18.6   0.0    2.1  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
     0.0035   15.7   0.0        4.7    5.6   0.0    3.5  3  TIGR00014 arsC: arsenate reductase (glutaredoxin)
  ------ inclusion threshold ------
      0.014   13.6   0.0        6.8    5.1   0.0    3.4  3  TIGR02200 GlrX_actino: glutaredoxin-like protein
      0.014   11.8   0.0       0.18    8.2   0.0    2.1  2  TIGR03768 RPA4764: metallophosphoesterase, RPA4764 family
       0.03   12.4   0.0         13    3.9   0.0    3.3  3  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   6.5e-35   2.2e-32       4      95 ..     137     229 ..     134     232 .. 0.92
   2 !  113.6   0.0   2.4e-36   8.1e-34       3      90 ..     252     339 ..     250     347 .. 0.95
   3 !  120.2   0.0     2e-38   6.8e-36       3      97 ..     355     449 ..     353     451 .. 0.96

  Alignments for each domain:
  == domain 1    score: 108.9 bits;  conditional E-value: 6.5e-35
    TIGR00365   4 kikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelye.sgelkk 95 
                  ++ + ++  + +l+mkG+p+ p+CGfs + v++l++ g+ef ++++l+d+++r++lk +snWPt+PqlyvkgelvGG di++e+ e +g+l +
  MMETSP1174-20130828|14739_1 137 RLVKLISAAPTMLFMKGSPSEPRCGFSRTFVELLSSNGIEFGSFDILQDDDVRQGLKVFSNWPTYPQLYVKGELVGGLDILKEMLEeEGSLAE 229
                  566889999***************************************************************************861466665 PP

  == domain 2    score: 113.6 bits;  conditional E-value: 2.4e-36
    TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyes 90 
                  e+ ++ +++ +v+l+mkG p++pqCGfs ++v++l+ ++vef+++++l deeir++lk ys+WPt+Pqlyv+gel+GG di++e++++
  MMETSP1174-20130828|14739_1 252 ERCSKVIHQAPVMLFMKGDPDAPQCGFSRTMVSLLQDASVEFQSFDILGDEEIRQHLKVYSKWPTYPQLYVNGELIGGIDILKEMAAD 339
                  677899*******************************************************************************875 PP

  == domain 3    score: 120.2 bits;  conditional E-value: 2e-38
    TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97 
                  +++++  +++kv+l+mkGtp++p+CGfs+++vq+l++++ +f ++++l+d+++r++lk++s+WPt+Pq+yv+ge++GG di++el e++el+ +l
  MMETSP1174-20130828|14739_1 355 DRLRQLTSRSKVMLFMKGTPSAPECGFSSTIVQMLQEAQCSFDSFDILQDPDVRAGLKKFSDWPTFPQVYVSGEFIGGLDIMKELKEADELSVAL 449
                  678888999*********************************************************************************98776 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   9.8e-10   3.3e-07       6      77 ..     157     228 ..     156     231 .. 0.90
   2 !   30.0   0.0   2.9e-10     1e-07       7      71 ..     274     337 ..     272     344 .. 0.94
   3 !   34.2   0.0   1.4e-11   4.9e-09       7      77 ..     377     446 ..     374     449 .. 0.95

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 9.8e-10
    TIGR02181   6 kksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLla.leregkLd 77 
                  ++ C+++++  +lL+++g+ef  +++ +d++ r+ +   s+   t PQ++++ + vGG d L + le+eg+L 
  MMETSP1174-20130828|14739_1 157 EPRCGFSRTFVELLSSNGIEFGSFDILQDDDVRQGLKVFSN-WPTYPQLYVKGELVGGLDILKEmLEEEGSLA 228
                  578*************************************6.********************86267778775 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 2.9e-10
    TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlale 71 
                  ++C+++++  +lL++ +vef+ +++  d+e r+++   sk   t PQ++++ + +GG+d L ++ 
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFDILGDEEIRQHLKVYSK-WPTYPQLYVNGELIGGIDILKEMA 337
                  68*************************************7.9*****************998876 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 1.4e-11
    TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLd 77 
                  + C+++s+  ++L+e + +f+ +++ +d++ r+ + + s+   t+PQ+++  + +GG d + +l+++++L+
  MMETSP1174-20130828|14739_1 377 PECGFSSTIVQMLQEAQCSFDSFDILQDPDVRAGLKKFSD-WPTFPQVYVSGEFIGGLDIMKELKEADELS 446
                  78**********************************9995.**************************9996 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.7e-07   5.7e-05       7      82 ..     158     229 ..     155     231 .. 0.85
   2 !   24.8   0.0   1.2e-08   4.1e-06       7      75 ..     274     337 ..     263     343 .. 0.86
   3 !   29.1   0.0   5.3e-10   1.8e-07       7      81 ..     377     446 ..     366     449 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.7e-07
    TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkkl.ekkgklee 82 
                  + C +++   elL+++ ++  +   ++ +    +++++ Lk +++  t P+++++g+ +GG d lk++ e++g l+e
  MMETSP1174-20130828|14739_1 158 PRCGFSRTFVELLSSNGIE--FGSFDILQD---DDVRQGLKVFSNWPTYPQLYVKGELVGGLDILKEMlEEEGSLAE 229
                  67************99899..777777766...899***************************99986266677766 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 1.2e-08
    TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkkle 75 
                  + C +++ + +lL++ +v+  ++  ++      +e+++ Lk +++  t P++++ng+ iGG d lk++ 
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVE--FQSFDILGD---EEIRQHLKVYSKWPTYPQLYVNGELIGGIDILKEMA 337
                  57************99898..777777654...89***************************9988876 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 5.3e-10
    TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkle 81 
                  + C +++ + ++L++ + +  +   ++ +     ++++ Lk++++  t P+++++g+fiGG d +k+l++ ++l 
  MMETSP1174-20130828|14739_1 377 PECGFSSTIVQMLQEAQCS--FDSFDILQD---PDVRAGLKKFSDWPTFPQVYVSGEFIGGLDIMKELKEADELS 446
                  57************88666..666776665...89*************************************996 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06   0.00051      16      78 ..     158     221 ..     154     222 .. 0.84
   2 !   17.1   0.0   2.4e-06   0.00082      16      76 ..     274     335 ..     258     338 .. 0.79
   3 !   15.5   0.0   7.7e-06    0.0026      16      75 ..     377     437 ..     359     440 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-06
    TIGR02190  16 pGCPfCakakavLkekGldfe..eivLgkdirtrslravtGattvPqvfinGkliGgsdeleayl 78 
                  p C f     ++L  +G++f   +i  + d+r + l+  +   t Pq +++G+l+Gg d l++ l
  MMETSP1174-20130828|14739_1 158 PRCGFSRTFVELLSSNGIEFGsfDILQDDDVR-QGLKVFSNWPTYPQLYVKGELVGGLDILKEML 221
                  67999999999********9622566666665.78*************************99876 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.4e-06
    TIGR02190  16 pGCPfCakakavLkekGldfeei.vLgkdirtrslravtGattvPqvfinGkliGgsdelea 76 
                  p C f      +L++  ++f+   +Lg +   + l+  +   t Pq ++nG+liGg d l++
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFdILGDEEIRQHLKVYSKWPTYPQLYVNGELIGGIDILKE 335
                  45777777778899998888765345655556789999999*****************9987 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 7.7e-06
    TIGR02190  16 pGCPfCakakavLkekG..ldfeeivLgkdirtrslravtGattvPqvfinGkliGgsdele 75 
                  p C f     ++L+e    +d  +i  + d+r+  l+  +   t Pqv++ G++iGg d ++
  MMETSP1174-20130828|14739_1 377 PECGFSSTIVQMLQEAQcsFDSFDILQDPDVRA-GLKKFSDWPTFPQVYVSGEFIGGLDIMK 437
                  678888888899988751155668888888886.69999******************99876 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.6e-13   5.5e-11      10      96 ..      22     109 ..      13     114 .. 0.80
   2 ?   -0.8   0.0       1.1   3.7e+02      66      86 ..     142     161 ..     125     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.6e-13
    TIGR01068  10 vassdklvlvDfwAeWCgpCkm...laPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngke.vkrvvGakpkaalkel 96 
                  +a  +++ ++ fwA W  p k    +  v++e+ k+  e++++vK++ ++  ei+a ++++ +Pt +++k g e v++  Ga+   al+e 
  MMETSP1174-20130828|14739_1  22 TA--KQNTVIFFWAAWHEPSKQggqMDLVFAEIHKKHGESIAFVKIEAEQAAEISAFFEVAVVPTFMFLKTGGEiVDKLEGANA-PALAER 109
                  33..3478999*********963337789*****************************************87552788888876.455555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1.1
    TIGR01068  66 irsiPtlllfkngkevkrvvG 86 
                  i++ Pt+l++k g+  +   G
  MMETSP1174-20130828|14739_1 142 ISAAPTMLFMK-GSPSEPRCG 161
                  88999988776.555555555 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4   1.2e+03      22      72 ..      47      95 ..      39     103 .. 0.57
   2 !   11.7   0.0   0.00012     0.042       4      78 ..     141     217 ..     138     232 .. 0.77
   3 !   14.4   0.0   1.8e-05     0.006       3      78 ..     256     333 ..     254     348 .. 0.82
   4 !   10.0   0.0   0.00041      0.14      17      78 ..     378     436 ..     357     453 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.4
    TIGR02189 22 hvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklv 72
                  v  ++ +++G + a v ++ e +a+ei+ a++e++  ++   +  GG++v
  MMETSP1174-20130828|14739_1 47 LVFAEIHKKHGESIAFVKIEAE-QAAEIS-AFFEVAVVPTFMFLKTGGEIV 95
                 5555666667777777777644.555554.455545555555555666666 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00012
    TIGR02189   4 lvsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleev 78 
                  l+s  + ++f k s     C +s +  +Ll+  G++   +++ ++++ +   + l  ++  ++ P ++v G+lvGgl+ +
  MMETSP1174-20130828|14739_1 141 LISAAPTMLFMKGSpseprCGFSRTFVELLSSNGIEFGSFDILQDDDVR---QGLKVFSNWPTYPQLYVKGELVGGLDIL 217
                  666666666666544455599999999*********9999999885555...555555569***************9865 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.8e-05
    TIGR02189   3 rlvsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleev 78 
                  +++ + +v++f k       C +s ++  Ll++  v+   +++  ++e ++  k++++    ++ P ++v G+l+Gg++ +
  MMETSP1174-20130828|14739_1 256 KVIHQAPVMLFMKGDpdapqCGFSRTMVSLLQDASVEFQSFDILGDEEIRQHLKVYSK---WPTYPQLYVNGELIGGIDIL 333
                  5666777777776422233499**********************99999999999988...999*************9865 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00041
    TIGR02189  17 sCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleev 78 
                   C +s ++ ++l+e   +   +++ ++    ++ + l +++  ++ P v+v G+++Ggl+ +
  MMETSP1174-20130828|14739_1 378 ECGFSSTIVQMLQEAQCSFDSFDILQD---PDVRAGLKKFSDWPTFPQVYVSGEFIGGLDIM 436
                  377777777888877777776776655...6777788888889***************9865 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00023     0.077       7      65 ..     157     215 ..     156     222 .. 0.88
   2 !   11.7   0.0   0.00018     0.061       8      65 ..     274     331 ..     272     335 .. 0.89
   3 !   11.2   0.0   0.00025     0.085       7      66 ..     376     435 ..     373     441 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00023
    TIGR02196   7 tpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGFd 65 
                  +p C+  +   e L s+gi+f  +d+ +d   ++ l   ++    P++ +++++v G d
  MMETSP1174-20130828|14739_1 157 EPRCGFSRTFVELLSSNGIEFGSFDILQDDDVRQGLKVFSNWPTYPQLYVKGELVGGLD 215
                  68899999999***********************9888888999999999998887766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00018
    TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGFd 65 
                  p+C+  + +   L+ + ++f+ +d+  d++ +++l   ++    P++ ++++++ G d
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFDILGDEEIRQHLKVYSKWPTYPQLYVNGELIGGID 331
                  78999999999***********************8777788999******99887765 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00025
    TIGR02196   7 tpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGFdk 66 
                   p+C+    + ++L+++  +f+ +d+ +d+  ++ l k ++    P++ + ++ + G d+
  MMETSP1174-20130828|14739_1 376 APECGFSSTIVQMLQEAQCSFDSFDILQDPDVRAGLKKFSDWPTFPQVYVSGEFIGGLDI 435
                  68999999*******************************************998988775 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06   0.00036      10      92 ..      21     102 ..      12     117 .. 0.83
   2 ?   -3.4   0.0       7.4   2.5e+03      23      44 ..     273     294 ..     272     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-06
    TIGR01126  10 vldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeR 92 
                  ++ +++++++ f+a W    k+        a+  kk+ e++   k++a++  e+++ f+v   Pt +f+k+g +   + eG+ 
  MMETSP1174-20130828|14739_1  21 IT-AKQNTVIFFWAAWHEPSKQGGQMDLVFAEIHKKHGESIAFVKIEAEQAAEISAFFEVAVVPTFMFLKTGGEIVDKLEGAN 102
                  44.57888999*****999998776666678888888899********************************99888888865 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.4
    TIGR01126  23 aPWCGhCkklaPeyeklakelk 44 
                  aP CG  ++++   ++++ e++
  MMETSP1174-20130828|14739_1 273 APQCGFSRTMVSLLQDASVEFQ 294
                  8999999998887777776665 PP

>> TIGR00014  arsC: arsenate reductase (glutaredoxin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.055        19       6      30 ..     157     181 ..     156     197 .. 0.80
   2 ?    5.6   0.0     0.014       4.7       7      34 ..     274     301 ..     272     313 .. 0.80
   3 ?    1.6   0.0      0.25        86       7      43 ..     377     413 ..     375     419 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.055
    TIGR00014   6 nPrCsksretLalledkgiepevvk 30 
                   PrC+ sr  ++ll  +gie    +
  MMETSP1174-20130828|14739_1 157 EPRCGFSRTFVELLSSNGIEFGSFD 181
                  6*****************9965555 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.014
    TIGR00014   7 PrCsksretLalledkgiepevvkyLkn 34 
                  P+C+ sr  ++ll+d+ +e +  + L +
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFDILGD 301
                  9****************99776666655 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.25
    TIGR00014   7 PrCsksretLalledkgiepevvkyLknppskseLke 43 
                  P C+ s   +++l++++   +  + L++p  ++ Lk+
  MMETSP1174-20130828|14739_1 377 PECGFSSTIVQMLQEAQCSFDSFDILQDPDVRAGLKK 413
                  99***************99999999999999988886 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02       6.8       8      37 ..     158     187 ..     156     197 .. 0.90
   2 ?    2.0   0.0      0.18        63       8      37 ..     274     303 ..     272     312 .. 0.88
   3 ?    1.8   0.0       0.2        69       7      37 ..     376     406 ..     374     427 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.02
    TIGR02200   8 swCgyCaslkrtLdkdgaeYevvdiekdee 37 
                  + Cg+ ++  + L ++g+e+   di +d++
  MMETSP1174-20130828|14739_1 158 PRCGFSRTFVELLSSNGIEFGSFDILQDDD 187
                  57************************9986 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.18
    TIGR02200   8 swCgyCaslkrtLdkdgaeYevvdiekdee 37 
                  + Cg+ +++   L+   +e++  di  dee
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFDILGDEE 303
                  67*******9***************99997 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.2
    TIGR02200   7 tswCgyCaslkrtLdkdgaeYevvdiekdee 37 
                  ++ Cg+  ++ + L++   +++  di +d++
  MMETSP1174-20130828|14739_1 376 APECGFSSTIVQMLQEAQCSFDSFDILQDPD 406
                  567*************************986 PP

>> TIGR03768  RPA4764: metallophosphoesterase, RPA4764 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00053      0.18     408     449 ..     258     299 ..     244     306 .. 0.91
   2 ?    1.1   0.0     0.074        25     413     455 ..     366     408 ..     361     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00053
    TIGR03768 408 rhlntvkafkspdparpesGfWqvetaslrdfPqqfrtfeiv 449
                   h+  v  f+  dp+ p+ Gf +  ++ l+d   +f+ f+i 
  MMETSP1174-20130828|14739_1 258 IHQAPVMLFMKGDPDAPQCGFSRTMVSLLQDASVEFQSFDIL 299
                  5899999*********************************96 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.074
    TIGR03768 413 vkafkspdparpesGfWqvetaslrdfPqqfrtfeivlnsddt 455
                  v  f+   p+ pe Gf    +  l++    f  f+i +  d  
  MMETSP1174-20130828|14739_1 366 VMLFMKGTPSAPECGFSSTIVQMLQEAQCSFDSFDILQDPDVR 408
                  6779999*****************************9988865 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.12        40       7      42 ..     158     193 ..     156     198 .. 0.86
   2 ?    3.9   0.0     0.038        13       7      42 ..     274     309 ..     272     314 .. 0.90
   3 ?    1.4   0.0      0.23        77       7      44 ..     377     414 ..     375     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.12
    TIGR01617   7 pncttckkarrwLeangieyeeidlkedtitreelk 42 
                  p c  ++  ++ L  ngie+   d+ +d   r+ lk
  MMETSP1174-20130828|14739_1 158 PRCGFSRTFVELLSSNGIEFGSFDILQDDDVRQGLK 193
                  789999******************999987777665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.038
    TIGR01617   7 pncttckkarrwLeangieyeeidlkedtitreelk 42 
                  p c  ++  +  L++  +e++  d+  d+  r++lk
  MMETSP1174-20130828|14739_1 274 PQCGFSRTMVSLLQDASVEFQSFDILGDEEIRQHLK 309
                  89**********************999988888887 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.23
    TIGR01617   7 pncttckkarrwLeangieyeeidlkedtitreelkei 44 
                  p c  +   ++ L++ + +++  d+ +d+  r  lk++
  MMETSP1174-20130828|14739_1 377 PECGFSSTIVQMLQEAQCSFDSFDILQDPDVRAGLKKF 414
                  789999999******************99888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1260.12
//
Query:       MMETSP1174-20130828|14743_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1174-20130828|14742_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.1   0.1      0.033   10.6   0.0    1.9  2  TIGR03767 P_acnes_RR: metallophosphoesterase, PPA1498 family


Domain annotation for each model (and alignments):
>> TIGR03767  P_acnes_RR: metallophosphoesterase, PPA1498 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   7.9e-06     0.033     182     196 ..     153     167 ..     131     188 .. 0.80
   2 ?   -0.1   0.0     0.015        60     318     354 ..     248     284 ..     238     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.9e-06
    TIGR03767 182 lklPWysvlGnhddl 196
                   ++PWysv Gnhd  
  MMETSP1174-20130828|14742_1 153 TDIPWYSVYGNHDYE 167
                  689**********53 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.015
    TIGR03767 318 GslgaeqfkWlkdvlrdskdtllvlfshhtsksmenv 354
                  G + ++  + +++ +  s+ + l++fsh+++  ++++
  MMETSP1174-20130828|14742_1 248 GDIYKQGVALMQERIEHSSANNLIIFSHYPTSYLNDL 284
                  666777778889999999**********998877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1267.10
//
Query:       MMETSP1174-20130828|14748_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|14745_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 970.24
//
Query:       MMETSP1174-20130828|14749_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 827.47
//
Query:       MMETSP1174-20130828|14750_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 599.03
//
Query:       MMETSP1174-20130828|14754_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 205.05
//
Query:       MMETSP1174-20130828|14756_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 608.85
//
Query:       MMETSP1174-20130828|14753_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 1182.16
//
Query:       MMETSP1174-20130828|14757_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 972.15
//
Query:       MMETSP1174-20130828|14760_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|14761_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 471.39
//
Query:       MMETSP1174-20130828|14766_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|14770_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1174-20130828|14772_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   17.6   1.2    0.00039   17.3   0.8    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
  ------ inclusion threshold ------
      0.028   12.0   0.9      0.041   11.4   0.6    1.2  1  TIGR02834 spo_ytxC: putative sporulation protein YtxC


Domain annotation for each model (and alignments):
>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   1.9e-07   0.00039      93     189 ..      24     116 ..      16     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.9e-07
    TIGR01989  93 scskalieferkdvkeelafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaa 189
                   + +a  +f++ +    +  + E+ ++++ ll+r  +++    +++n++ + + +++++  n+n+n +++ +++ ++l+++      Ga S +R a+
  MMETSP1174-20130828|14772_1  24 DMIQAVFTFAKYEEWHRMVAMCEIYNLIRKLLNRHDNNN----NIQNNNTTSQSSVTHTADNNNNNNTHLAVTTLTNLTADTTPSPTGAASSIRSAM 116
                  56678889999999999*********9999999866555....778888888888888899********************9999999999999876 PP

>> TIGR02834  spo_ytxC: putative sporulation protein YtxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6     2e-05     0.041      62     145 ..       4      93 ..       2      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2e-05
    TIGR02834  62 liasiladiivekkekelllkiieesYyfldeeEie......qIkelaqsiLegerkddkseilklnrkseildeleefleendeinieg 145
                  +i++ l+ + +e +    l ++i+  + f + eE +      +I +l+++ L+  +++++ + ++++ +s++++   ++ ++n+++ ++ 
  MMETSP1174-20130828|14772_1   4 TISKLLSVLGLEERYYVTLEDMIQAVFTFAKYEEWHrmvamcEIYNLIRKLLNRHDNNNNIQNNNTTSQSSVTHTADNNNNNNTHLAVTT 93 
                  6777788888888888899***************88222222467778999999999999999***********9999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 735.37
//
Query:       MMETSP1174-20130828|14774_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|14769_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1449.29
//
Query:       MMETSP1174-20130828|14780_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.57
# Mc/sec: 102.41
//
Query:       MMETSP1174-20130828|14785_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|14783_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1368.52
//
Query:       MMETSP1174-20130828|14784_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-06   24.2   0.0    1.7e-05   23.1   0.0    1.5  1  TIGR02052 MerP: mercuric transport protein periplasmic component
     0.0035   15.4   0.0     0.0079   14.3   0.0    1.5  1  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.2e-09   1.7e-05      25      65 ..     225     265 ..     204     272 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.2e-09
    TIGR02052  25 vtlevPgmtcaacPitvktalkkvdGvekaevsfkqklavv 65 
                  + l+v gm+c ac + vk++l++  Gv  a v+f++  a v
  MMETSP1174-20130828|14784_1 225 MPLKVQGMSCEACQLHVKQTLERSSGVISAAVDFQRGTAEV 265
                  4699******************************9866654 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.9e-06    0.0079       4      44 ..     227     267 ..     225     286 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.9e-06
    TIGR00003   4 lqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeF 44 
                  l+V+gmsC+ C  ++ ++  + +GV    vd +++ ++V  
  MMETSP1174-20130828|14784_1 227 LKVQGMSCEACQLHVKQTLERSSGVISAAVDFQRGTAEVLI 267
                  79*******************************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1305.23
//
Query:       MMETSP1174-20130828|14781_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 1647.22
//
Query:       MMETSP1174-20130828|14787_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|14788_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.64
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|14793_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|14800_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:01.55
# Mc/sec: 86.01
//
Query:       MMETSP1174-20130828|14802_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1174-20130828|14806_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 199.28
//
Query:       MMETSP1174-20130828|14808_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 881.12
//
Query:       MMETSP1174-20130828|14809_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.64
# Mc/sec: 354.72
//
Query:       MMETSP1174-20130828|14810_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-136  452.7  11.7   2.2e-135  449.0   8.1    1.9  1  TIGR02056 ChlG: chlorophyll synthase ChlG
    1.4e-97  324.4   6.5    1.9e-97  324.0   4.5    1.1  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
      5e-10   37.1   0.2    7.1e-10   36.6   0.2    1.1  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    2.4e-07   28.7   0.9    5.6e-07   27.4   0.6    1.6  1  TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase
    6.2e-07   27.0   1.9    1.4e-06   25.9   1.3    1.7  1  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase


Domain annotation for each model (and alignments):
>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.0   8.1  2.7e-138  2.2e-135       1     306 []      24     348 ..      24     348 .. 0.93

  Alignments for each domain:
  == domain 1    score: 449.0 bits;  conditional E-value: 2.7e-138
    TIGR02056   1 qllgikgaapqets..kwkirlqltkpvtwiplvwgvvcgaaasgnyt..............ws..ledvlkailcmllsgplltgytqtlndfydreidainepyrpipsgaisvpevvtqvvllllaglavafildlwaghetptvtvlalfgsllayiysapplklkqngwlgnyalgasyialpwwagqalfg..eltpdvvvltllyslaglgiaivndfksvegdralglqslpvafgietakwicvvaidvtqllvaayllaigknlyalilvlliipqivfqdkyflkdplkydvkyqasaqpflvlgilvaalalqh 306
                  qllg+kg +++  s   wkirlqltkp twipl+wgv cgaaasgny+              w    ed  kai +m lsgp+ltg+tqt+nd+ydr++dainep rpipsgais+ ev++q+++ll++gl +af ld wa  e+ptvt +a+fgs++ayiysapplklk ngw g yalgasyialpww+g+a+f   ++t + vvlt+lyslaglgiaivndfks+egdralg++slpvafgi+ ak++cv++id+tql vaayl++ g+  y + l++li+pq+ fq   flkdp+ +dv yq  aqpflv+gil++a+a +h
  MMETSP1174-20130828|14810_1  24 QLLGFKGGTTDTDSflNWKIRLQLTKPGTWIPLIWGVACGAAASGNYHaiwnlfgdapttdsWGvvTEDTFKAIGAMTLSGPILTGFTQTINDWYDRDLDAINEPNRPIPSGAISEGEVIAQIWVLLVSGLVLAFQLDQWAMNELPTVTAIAVFGSFIAYIYSAPPLKLKANGWTGTYALGASYIALPWWCGHAMFSasTITSEEVVLTVLYSLAGLGIAIVNDFKSIEGDRALGMNSLPVAFGIDGAKYLCVATIDLTQLGVAAYLVSRGQVGYGVGLLALILPQMFFQL-DFLKDPVENDVAYQGKAQPFLVFGILLTAIAQGH 348
                  89*****9955444447******************************87733333333333332335999******************************************************************************************************************************63378999***********************************************************************************9997.59*****************************998 PP

>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.0   4.5  2.3e-100   1.9e-97       1     281 [.      42     345 ..      42     347 .. 0.96

  Alignments for each domain:
  == domain 1    score: 324.0 bits;  conditional E-value: 2.3e-100
    TIGR01476   1 rarleLikPvtWiapiwavlCGavasGalr..gs..............vekflklLlgmllaGPlltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwv......ivlltvlGvvlaliyslePiklkrngWlGnalvalsyvglaWlaGhavfaa..ltleivvvaLlyslaaaGilvlnDfksveGDrklGlrslpvalGvkvaaklavvvidvaqilvigllliwgkqlvativlllLvaqiiaqaklflrdpeenevkynatavpllvlgmlvaala 281
                  ++rl+L kP tWi++iw+v CGa+asG ++  ++              +e+  k++ +m l+GP+ltG++q++nd++Drd+DaineP+rpiPsGais  ev+ +i vl+v gl +a+ l++w+      +  ++v+G ++a+iys++P+klk ngW G +++++sy++l+W++Gha+f+a  +t e vv+++lysla++Gi+++nDfks+eGDr lG++slpva+G++ a  l+v +id  q  v+++l+  g+  +   +l+l+++q+++q   fl+dp en+v y++ a+p+lv+g l++a+a
  MMETSP1174-20130828|14810_1  42 KIRLQLTKPGTWIPLIWGVACGAAASGNYHaiWNlfgdapttdswgvvTEDTFKAIGAMTLSGPILTGFTQTINDWYDRDLDAINEPNRPIPSGAISEGEVIAQIWVLLVSGLVLAFQLDQWAmnelptVTAIAVFGSFIAYIYSAPPLKLKANGWTGTYALGASYIALPWWCGHAMFSAstITSEEVVLTVLYSLAGLGIAIVNDFKSIEGDRALGMNSLPVAFGIDGAKYLCVATIDLTQLGVAAYLVSRGQVGYGVGLLALILPQMFFQLD-FLKDPVENDVAYQGKAQPFLVFGILLTAIA 345
                  689************************986226699*****999999989999**********************************************************************9999988999*********************************************985567788**********************************************************************999999999******99.****************************97 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.2   8.7e-13   7.1e-10      52     222 ..     111     293 ..      98     319 .. 0.75

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 8.7e-13
    TIGR01475  52 amavnrlideeiDakNPRtknrelvsGkiskkeavtliilsli....l.fliasyflNkl..afiLspvvllvliiypy....lKRftalahlvLglvlglavlagavavigeisillvavllvigvvfwvagfDliyaiqDlefDkknglksiparfGvkaa..lkiaslshv.itvvlllllg 222
                    ++n   d+++Da N    nr+++sG+is+ e+++ i + l+    l f +  + +N+l  + ++++   ++++iy++    lK   +   + Lg  + + +     a+  + +i+   v+l++  ++   g  +++  + +e D++ g++s+p+ fG+  a  l +a++  + + v+++l+  
  MMETSP1174-20130828|14810_1 111 TQTINDWYDRDLDAIN--EPNRPIPSGAISEGEVIAQIWVLLVsglvLaFQLDQWAMNELptVTAIAVFGSFIAYIYSApplkLKANGWTGTYALGASYIALPWWCGHAMFSASTITSEEVVLTVLYSLAGLGIAIVNDFKSIEGDRALGMNSLPVAFGIDGAkyLCVATIDLTqLGVAAYLVSR 293
                  56899999*******9..579*********9998776655554110032555566667542245667777899999985444489999999********999999999999999988899999999999999****************************8663366677655424444444444 PP

>> TIGR01473  cyoE_ctaB: protoheme IX farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.6   6.8e-10   5.6e-07       4     163 ..      45     231 ..      42     238 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.8e-10
    TIGR01473   4 lqltKprlislvlltalagmllasksae...................vnlllllltllgttlaaasanalNmvidrdiDkkMkRTknRplvsgkvspsealafglllgvlgvvlLall....vn..llaallvlagiflyvvvYTll...lKrktilniv.iGglaGavPpliGwaAvtg.sisleallL 163
                  lqltKp+ ++ +++ +++g++ + +  +                     +  + +++l++ +  + ++++N ++drd D++ +   nRp++sg +s+ e++a   +l+v g+vl + l    +n  +++ +++++g f+ + +Y+ +   lK + +  +  +G+   a+P + G+a  +  +i+ e ++L
  MMETSP1174-20130828|14810_1  45 LQLTKPGTWIPLIWGVACGAAASGNYHAiwnlfgdapttdswgvvteDTFKAIGAMTLSGPILTGFTQTINDWYDRDLDAINE--PNRPIPSGAISEGEVIAQIWVLLVSGLVLAFQLdqwaMNelPTVTAIAVFGSFI-AYIYSAPplkLKANGWTGTYaLGASYIALPWWCGHAMFSAsTITSEEVVL 231
                  6899999999999999999887777655888999999999999887755667999999999*******************965..8*************************9888754111123112333344444443.34455322226666666664366666777777777766541455555555 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   1.3   1.7e-09   1.4e-06      54     242 ..     108     307 ..      52     343 .. 0.68

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.7e-09
    TIGR01474  54 rgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvllllnklti.......llgvaslalvliY...Pl.lKRitylpQlvLglafs....wgvllgfaavag.klstaaivLylasilWtlgYDTiyamqDkedDakigvkstallfgdktksvlailyaltilllalagliaglgavyylalavaal 242
                   g   +iND  DrdlD+  e   +RP++sga+s+ + ++ + vll+ +l+++++l++ ++       +++v++ ++++iY   Pl lK   +    +Lg+++     w     f+a +  + +++++vLy  +    lg   +  ++ +e D+ +g++s  ++fg    + l++ ++  + l + a l++  ++ y ++l++ +l
  MMETSP1174-20130828|14810_1 108 TGFTQTINDWYDRDLDAINE--PNRPIPSGAISEGEVIAQIWVLLVSGLVLAFQLDQWAMnelptvtAIAVFGSFIAYIYsapPLkLKANGWTGTYALGASYIalpwWCGHAMFSASTItSEEVVLTVLYSLA---GLGIAIVNDFKSIEGDRALGMNSLPVAFGIDGAKYLCVATIDLTQLGVAAYLVSRGQVGYGVGLLALIL 307
                  455669**********9655..79********************999*****999987753322222567777788888866333234444555667777663222243344455544435556666677543...334444556788899999999999999999888888776665554444444444444444455544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.65
# Mc/sec: 714.77
//
Query:       MMETSP1174-20130828|14812_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 702.18
//
Query:       MMETSP1174-20130828|14815_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|14816_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 121.34
//
Query:       MMETSP1174-20130828|14820_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.64
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|14821_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.66
# Mc/sec: 137.99
//
Query:       MMETSP1174-20130828|14817_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-10   37.7   0.0    1.8e-10   37.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0015   15.8   0.1     0.0025   15.1   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   8.5e-14   1.8e-10      24     192 ..      49     210 ..      30     260 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 8.5e-14
    TIGR03903  24 RFrReialCarLshPnivaLlDsGea.edgllFavFeyveGrtlrevLaa....dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGa 192
                      ei + a ++hPniva l      +d  l  + e+ +   l + +      +  +      + m+q+ Dal + h + ++hRD+k  n  +   +     kv D  ++     ++d         +  +G+P Y +Pe   + p   +sD++a G  v e L  k+  +G 
  MMETSP1174-20130828|14817_1  49 DAVNEIRVLASIRHPNIVAFLQAFLNdKDKELCIIMEHCACGDLTAKIERykkrKQQIDERVVWAYMIQMADALKCFHGKNILHRDIKAANCFLGEDG---SIKVGDLNVAKR---MKD------NFVQTQIGTPFYMSPEVWSNKPYNFASDIWALGCTVYELLALKPPFTGR 210
                  555799***************99765156689999****988887766541111445556666789**************************997766...467777766543...333......3334469*******************************99888777775 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.2e-06    0.0025      45     133 ..      51     153 ..      16     165 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-06
    TIGR03724  45 rkEarllseakkagvntPvvydvd..peekkivmeyiegkklkdlleekel...........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDf 133
                  ++E+r+l+++++  + + +  +++  ++e  i+me+    +l   +e+ ++            ++ ++++++   H ++i+h D+  +N  +  d+++ + D+
  MMETSP1174-20130828|14817_1  51 VNEIRVLASIRHPNIVAFLQAFLNdkDKELCIIMEHCACGDLTAKIERYKKrkqqidervvwAYMIQMADALKCFHGKNILHRDIKAANCFLGeDGSIKVGDL 153
                  678888888888887776555444014456799***9999999999987777889999999999**************************9951444444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.78
# Mc/sec: 798.70
//
Query:       MMETSP1174-20130828|14822_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 209.25
//
Query:       MMETSP1174-20130828|14824_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 364.91
//
Query:       MMETSP1174-20130828|14823_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 1281.49
//
Query:       MMETSP1174-20130828|14827_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 834.64
//
Query:       MMETSP1174-20130828|14826_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.96
# Mc/sec: 884.05
//
Query:       MMETSP1174-20130828|14828_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 281.81
//
Query:       MMETSP1174-20130828|14831_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.52
# Mc/sec: 413.74
//
Query:       MMETSP1174-20130828|14835_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.71
# Mc/sec: 105.96
//
Query:       MMETSP1174-20130828|14841_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1123.31
//
Query:       MMETSP1174-20130828|14845_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-32  108.6   0.0    6.4e-32  108.4   0.0    1.0  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   1.5e-35   6.4e-32     796     925 ..      24     164 ..      18     166 .] 0.87

  Alignments for each domain:
  == domain 1    score: 108.4 bits;  conditional E-value: 1.5e-35
    TIGR00592 796 kkaaYaGGLvlePkkGlydkyvLllDFnsLYPsiiqefniCFttvqqkvdeD...........elPelPdseveqGiLPrelkkLverRkevkklmkadldPdlrlqydiRqkaLkLtanSmYGclGysksrfyakplAal 925
                    a Y+G  v+ePkk +y++ +  lDF sLYPsi+q +n+C+ t  +++d+                   se+ +GiLP+ l ++   Rk+ kk mk+ +dP  +   + Rq aLk+ anS+YG+ G++ + +++  +A +
  MMETSP1174-20130828|14845_1  24 DEAGYEGATVIEPKKAFYNEPIATLDFASLYPSIMQAYNLCYSTLLRPEDKKrldpaqykmspSKDCFVTSETRKGILPQILDEILAARKQAKKDMKNATDPMEKAVQNGRQLALKISANSVYGFTGATVGQLPCLAIASS 164
                  5699*****************************************955555444488664222222355799******************************87777789**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 592.17
//
Query:       MMETSP1174-20130828|14847_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|14848_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1685.61
//
Query:       MMETSP1174-20130828|14849_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 774.10
//
Query:       MMETSP1174-20130828|14855_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 192.48
//
Query:       MMETSP1174-20130828|14851_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 1282.18
//
Query:       MMETSP1174-20130828|14857_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|14859_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 234.17
//
Query:       MMETSP1174-20130828|14858_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 969.83
//
Query:       MMETSP1174-20130828|14861_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|14864_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.5   0.1       0.03   12.5   0.1    1.2  1  TIGR00632 vsr: DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> TIGR00632  vsr: DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.2e-06      0.03      81     107 ..      43      69 ..       8      71 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.2e-06
    TIGR00632  81 ktredyWsekieknverdrrvnqsLae 107
                   t+++yW+ k +k ver +   ++L+e
  MMETSP1174-20130828|14864_1  43 GTNKEYWLAKSRKEVERVQVSLKRLIE 69 
                  59***************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 203.72
//
Query:       MMETSP1174-20130828|14862_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.5   0.0      0.018   12.8   0.0    1.3  1  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2


Domain annotation for each model (and alignments):
>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-06     0.018      20     119 ..      10     108 ..       7     123 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.3e-06
    TIGR00185  20 rtCaatkaelhlikPlGfalddkrlkraGldywefvelvehksleefleaekekkalflltkkGtpdhisvkykdtdylvfGqetkGlPkslldel..aeqk 119
                  +tCaa k++    +P   ++ d +lk + l  w  ++    ++++e+l+ +++ + l ++    +   + v ++dt    fG+et  + +++l++   ++q+
  MMETSP1174-20130828|14862_1  10 QTCAARKFS---TEPPRSQTTDLYLKYSKLMTWRSIQRGTSEAIDELLKVQNRARLLAAIVLLTAMGTTYVMFSDTILSFFGRETAEVARQVLKNEglQDQT 108
                  677777765...478888999*******************************99965555555555556677777778889********9999887434444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.78
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|14865_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 873.46
//
Query:       MMETSP1174-20130828|14866_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 581.73
//
Query:       MMETSP1174-20130828|14868_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   22.8   1.4    5.9e-06   22.4   1.0    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.0   1.5e-09   5.9e-06     686     763 ..     260     335 ..     252     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.5e-09
    TIGR02865 686 dvevekkklkng.DlivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekalel..rkgkikDDmTvivakv 763
                  d+e+ + kl+ +  ++vl sDG+ e  +++      +v+++ +++t d e i+++l+++a+++   + ++ DD Tvi++ +
  MMETSP1174-20130828|14868_1 260 DPEITHSKLTSDtAFLVLASDGLWEFMDDQC-----VVDMVAQNQTDDTETICQKLIDEAKKRwmDEEEVVDDTTVILVHM 335
                  567777777654279***********99976.....*************************983357889*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.60
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|14873_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-27   92.8   0.0    5.3e-27   92.7   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.5e-26   88.3   0.0    3.8e-26   88.2   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
      1e-21   75.5   0.0    1.2e-21   75.3   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.8e-20   69.9   0.0    4.8e-20   69.6   0.0    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.7e-20   69.4   0.0    7.9e-20   69.1   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      1e-18   65.5   0.1    1.2e-18   65.3   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.9e-15   54.0   0.0    4.5e-15   53.8   0.0    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      4e-15   53.7   0.0    4.5e-15   53.5   0.0    1.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.2e-15   53.9   0.0    5.1e-15   53.6   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.3e-14   50.0   0.0    3.7e-14   49.9   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.9e-14   50.5   0.0    4.5e-14   50.3   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.2e-12   44.1   0.0      4e-12   43.7   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.9e-12   43.4   0.0    4.4e-12   43.2   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    1.4e-11   42.1   0.0    1.5e-11   42.0   0.0    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.8e-11   41.5   0.0    2.1e-11   41.3   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.8e-11   41.2   0.0    1.9e-11   41.1   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.5e-10   38.7   0.0    1.7e-10   38.5   0.0    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.9e-10   38.6   0.0    2.2e-10   38.4   0.0    1.0  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.3e-10   36.9   0.0    3.9e-10   36.7   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      4e-10   37.5   0.0    4.6e-10   37.3   0.0    1.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.1e-10   36.7   0.0    4.1e-10   36.7   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    7.4e-10   35.5   0.0    8.4e-10   35.4   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    8.6e-10   36.5   0.1    9.7e-10   36.4   0.0    1.0  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.6e-10   36.0   0.0    1.1e-09   35.8   0.0    1.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.1e-09   36.0   0.1    1.2e-09   35.8   0.0    1.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-09   35.4   0.0    1.5e-09   35.2   0.0    1.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.9e-09   33.8   0.0    3.9e-09   33.4   0.0    1.2  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      3e-09   34.4   0.0    3.2e-09   34.3   0.0    1.1  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.1e-09   32.3   0.0    8.4e-09   32.0   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-08   31.7   0.0    1.6e-08   31.5   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.6e-08   31.5   0.2    2.8e-08   31.4   0.1    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.6e-08   31.0   0.0      4e-08   30.9   0.0    1.2  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    6.2e-08   29.8   0.0    7.3e-08   29.6   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    7.5e-08   29.2   0.0    8.9e-08   29.0   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    8.8e-08   29.8   0.0    9.8e-08   29.7   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.2e-07   29.4   0.0    1.4e-07   29.1   0.0    1.0  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.2e-07   27.6   0.0    2.5e-07   27.4   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.4e-07   28.2   0.0    2.6e-07   28.1   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    3.3e-07   28.0   0.0    3.6e-07   27.8   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.4e-07   27.0   0.0    3.7e-07   26.9   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.6e-07   25.4   0.0    6.3e-07   25.2   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.2e-06   25.8   0.0    1.5e-06   25.5   0.0    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.3e-06   25.8   0.0    1.4e-06   25.7   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.9e-06   25.4   0.0    2.2e-06   25.2   0.0    1.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      2e-06   25.3   0.0      2e-06   25.3   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.7e-06   23.3   0.0      1e-05   22.7   0.0    1.5  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.1e-06   22.4   0.0    8.2e-06   22.2   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    8.5e-06   22.9   0.0      1e-05   22.6   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.3e-05   21.7   0.0    1.4e-05   21.6   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.2e-05   20.7   0.0    2.3e-05   20.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.4e-05   22.0   0.0    2.8e-05   21.7   0.0    1.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.7e-05   19.9   0.0    4.7e-05   19.9   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00012   19.0   0.0    0.00012   19.0   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    0.00052   16.4   0.0     0.0006   16.2   0.0    1.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    0.00066   15.0   0.0    0.00074   14.9   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0051   12.6   0.2     0.0066   12.2   0.1    1.0  1  TIGR00618 sbcc: exonuclease SbcC
  ------ inclusion threshold ------
       0.01   11.1   0.0      0.012   10.8   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      0.019   12.6   0.1      0.025   12.2   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   7.5e-29   5.3e-27       1      95 [.      16     112 ..      16     118 .] 0.95

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 7.5e-29
    TIGR01188   1 KkygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPd..sGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyg 95 
                  K++g fkAv+g++++++eg++f+lLG nGAGK+tti+mLt+l +Pd  sGt+++ G ++ +e + +Rr+ig+ pq+  + ++Lt+re++ +++ l g
  MMETSP1174-20130828|14873_1  16 KTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFSLLKG 112
                  89*******************************************7669****************************************99987765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   5.3e-28   3.8e-26     927    1033 ..       7     113 ..       2     118 .] 0.92

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 5.3e-28
    TIGR01257  927 pgvcvknlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpp..tsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgr 1033
                   p v v  l k f      av+ +   +ye qi ++lghngagk+tt+ +ltgl+pp   sgt  + g +i++++   r+ +g+cpqh++lf +lt  ehi+f++ lkg 
  MMETSP1174-20130828|14873_1    7 PAVQVEHLQKTFGSF--KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFSLLKGG 113 
                   889999999999765..69*************************************5559***********************************************94 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   1.7e-23   1.2e-21       3     101 ..       9     109 ..       7     115 .. 0.95

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 1.7e-23
    TIGR03522   3 vevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkad..sGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaa 101
                  v+v++l k++g+ ka++ +sf++ +G+i  +lG nGaGkst++ +ltg +++d  sG+ ++ g+++  +   +r+niG  P+h+ l+ +l  re++ f + 
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFSL 109
                  89*************************************************97669***************************************999765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   6.8e-22   4.8e-20       4     102 ..       8     108 ..       6     114 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 6.8e-22
    TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispd..egkitvlgepvpararlarakigvvpqfdnldreftvrenllvfg 102
                  a+++  ++k++g    vn +sf + +g+ f llg ngagkst   ++ gl +pd   g+ t+ g+++ +++ lar +ig+ pq d l  ++t+re ++ f 
  MMETSP1174-20130828|14873_1   8 AVQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFS 108
                  67888999*********************************************84469**************************************99885 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.1e-21   7.9e-20       1     103 [.       8     112 ..       8     117 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.1e-21
    TIGR03864   1 aleveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLy..eakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhG 103
                  a++ve+l++++g+ +a++++s+++ +g++  LLG nGaGkst +++lt+L+  + ++g+ ++ G++++++ + a +++G+  q+  l   l+ ++ + +++ L+G
  MMETSP1174-20130828|14873_1   8 AVQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFppDYNSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFSLLKG 112
                  5799***********************************************434569********************************************9997 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   1.7e-20   1.2e-18       1      95 [.       9     106 ..       9     113 .. 0.93

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 1.7e-20
    TIGR00968   1 ilianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpd..sGrilleGrdv.trvkvrdreiGfvfqhyalfkhltvrdniaf 95 
                  +++++++k fG+f+a++ +++++ +G++ +llG  G+Gkst + +++Gl  pd  sG+ ++ G ++ +++++ +r+iG+  qh  lf +lt r+ i f
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIkSEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  58999********************************************8886559*******9974689************************9988 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   6.4e-17   4.5e-15       3      98 ..       9     104 ..       7     111 .. 0.91

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 6.4e-17
    TIGR03411   3 LevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpd..eGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenl 98 
                  ++ve+++ +f++fka+n +s+++ eg++  ++G nGaGk+t ++++tG   pd  +G+ ++ g++++  +e+++ar  ig   q+  +f++lt +e +
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIK--SEMHLARRNIGICPQHDVLFDKLTTREHI 104
                  6899**********************************************99744799999999996..68889999999999**********98865 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   6.4e-17   4.5e-15       3      99 ..       7     106 ..       5     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 6.4e-17
    TIGR03265   3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGL..ekqdaGaillggrdi.trlppqkrdyGivfqsYaLfPnltvaeniay 99 
                  +++++e+++k+f++f+a++ is+++ +g + +lLG  G Gk+t + +++GL   + ++G+ ++ g +i +++  ++r+ Gi  q  +Lf  lt +e i +
  MMETSP1174-20130828|14873_1   7 PAVQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLfpPDYNSGTTTIYGSNIkSEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  5789***********************************************4435578999998888846778899*****************9998865 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   7.3e-17   5.1e-15       2      97 ..      10     110 ..       9     116 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 7.3e-17
    TIGR03740   2 etknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrkt..sGeilldgrewtrkd.l..kkiGsliesPalyenltarenlkvrtll 97 
                  ++++l+k+f+  ++vn +s+ + + ++++llG nGaGkst++ +ltGl+ ++  sG  ++ g+++  ++ l  ++iG   ++  l+++lt+re +   +ll
  MMETSP1174-20130828|14873_1  10 QVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMhLarRNIGICPQHDVLFDKLTTREHIIFFSLL 110
                  789**********************************************875449*9999999887654233379*****************998766655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   5.2e-16   3.7e-14       3     100 ..      10     105 ..       8     115 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 5.2e-16
    TIGR02633   3 emkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvlenif 100
                  +++++ k+fg+ ka+++i++ +  G+i sl G nGaGkst + +l+g++p    +G  +  g+++k++   +  r+ i i  q  +l  +l+  e i+
  MMETSP1174-20130828|14873_1  10 QVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNSGTTTIYGSNIKSEM--HLARRNIGICPQHDVLFDKLTTREHII 105
                  78999***********************************************99***********9875..456777888888889999999999875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   6.4e-16   4.5e-14       2      96 ..      10     104 ..       9     112 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 6.4e-16
    TIGR03410   2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkv..ksGeielegeditklkpeervkaGiayvpqGreifpkltveenl 96 
                  +ve+l+ ++g+ ++++++s+++ +g++ ++lG+ng+Gk+t +  l+gl +   +sG+ ++ g++i++      +++ i+  pq   +f klt++e +
  MMETSP1174-20130828|14873_1  10 QVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKSEMH--LARRNIGICPQHDVLFDKLTTREHI 104
                  799*********************************************9853379**********98765..566677778**************87 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   5.6e-14     4e-12       3      98 ..      18     110 ..      16     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 5.6e-14
    TIGR01186   3 tGlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrlieP..taGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglel 98 
                   G+ ++vn ++++++eG+i+ ++G  G+Gkst++ +l  l  P   +G   i G +i   s+ +l    r+ i++  q+  lf   t  + i +   l
  MMETSP1174-20130828|14873_1  18 FGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIK--SEMHL---ARRNIGICPQHDVLFDKLTTREHIIFFSLL 110
                  6999*************************************995458**********6..56666...899****************99999886555 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   6.3e-14   4.4e-12      38     127 ..      21     111 ..       6     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 6.3e-14
    TIGR00955  38 kellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveake..mraisayvqqddlfiptltvrehLmfsahlr 127
                   + ++++s  +++G++  +lG  GaGK+T +n+l+   + + +  g+ ++ G ++++++   r++ +   q+d+++ +lt+reh++f + l+
  MMETSP1174-20130828|14873_1  21 FKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNS-GTTTIYGSNIKSEMhlARRNIGICPQHDVLFDKLTTREHIIFFSLLK 111
                  5567899999********************************99.88*******99766225788999*******************99887 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.2e-13   1.5e-11       2      98 ..       9     102 ..       8     114 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 2.2e-13
    TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsillegkevtklkkkelrklrkkigmifqeynlierltvle 98 
                  ++ve+l+k+++   +a++ +++++ +G++ +++G+ GaGkst + ++ +l     +sg+ +++g++++    +e++ +r++ig+  q+  l ++lt  e
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFG-SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPpdYNSGTTTIYGSNIK----SEMHLARRNIGICPQHDVLFDKLTTRE 102
                  689********.899***********************************8633689999****9998....789999*******99988888877655 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0     3e-13   2.1e-11     321     410 ..       8      97 ..       2     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 3e-13
    TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvept..eGailvngaelaeldadswrkqiawvpQkPllfeg 410
                  ++++e ++ ++   k a++++s+++  g++  l+G+ GaGKst++++l g+ +p+  +G+  + g+++++   +  r++i+  pQ+ +lf++
  MMETSP1174-20130828|14873_1   8 AVQVEHLQKTFGSFK-AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSE-MHLARRNIGICPQHDVLFDK 97 
                  466677777766666.************************************9964489****99988764.4778999**********986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   2.7e-13   1.9e-11     331     422 ..       5      96 ..       1     106 [. 0.86

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.7e-13
    TIGR02868 331 ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldpl..kGevtldgvsvaslsesevrrvvsvlaqdaHlFd 422
                  ++p +++++l+  +    ++++g+s+d+ +G+   ++G  GaGKst +++l+gl++p+  +G+ t+ g +++s + +  rr + +++q+  lFd
  MMETSP1174-20130828|14873_1   5 GTPAVQVEHLQKTFGSF-KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFD 96 
                  56788889998888665.679************************************5448*******88888.57778999********9998 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.4e-12   1.7e-10       2      96 ..       9      97 ..       8     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.4e-12
    TIGR00972  2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpm 96
                 ++v++l+ ++g+++a++ +++++++ ++ +l+G  G+Gkst   ++n l+ l +    +G+ ++ g++i ++   +   r+++G+  q+   f +
  MMETSP1174-20130828|14873_1  9 VQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKST---TINMLTGLFPPDYNSGTTTIYGSNIKSE---MHLARRNIGICPQHDVLFDK 97
                 6899************************************9...67899999999999***********887...7889*********9999974 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   3.1e-12   2.2e-10       2     102 ..       9     106 ..       8     115 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 3.1e-12
    TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekp..srGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenval 102
                  +++e+++k++ ++++a++ +s+ + +g++  l G+ GaGk+t +++l+g   p  ++G+ ++ g++++    +e+ l Rr+ig+  q   l+++ t+ e + +
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTF-GSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIK----SEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  7899999999.89************************************99883358*********97....577889**********99**99999998865 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.5e-12   3.9e-10     332     421 ..       9      97 ..       4     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 5.5e-12
    TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepd..sGeillDgvdladlkLasLRrqvalvsqdvvLFdd 421
                  v++++++ ++++   +a+++is+++ +G++ +l G  G+Gkst +n+l+  + pd  sG   + g +++  +++  Rr++ +  q+ vLFd 
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGS--FKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFDK 97 
                  677777777764..789**********************************9875448**********85.56667**************96 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   6.5e-12   4.6e-10       4     100 ..      12     110 ..       9     116 .. 0.90

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 6.5e-12
    TIGR01189   4 eelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpe..sGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaal 100
                  e+l  + g  + ++g+sf++  G++  + G+nG+GK+t + +l+GL +p+  sG+ ++ +++++ + +  ++++     +d l ++L+++E + f++ l
  MMETSP1174-20130828|14873_1  12 EHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHIIFFSLL 110
                  5666677788899**********************************996449************999999************************9765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.8e-12   4.1e-10     316     379 ..       2      67 ..       1     104 [. 0.88

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 5.8e-12
    TIGR03719 316 erlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpd..sGel 379
                  e lG   ++ve+l+k+fg+   ++ +sf++ +g i  ++G nGaGkst ++++tg   pd  sG+ 
  MMETSP1174-20130828|14873_1   2 ESLGTPAVQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTT 67 
                  579999*************************************************98887334554 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.2e-11   8.4e-10     481     561 ..      22     104 ..       8     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.2e-11
    TIGR03375 481 aaLknvslkikpGekvaiiGriGsGKstllklllglyep..teGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNi 561
                  +a++ +s+++  G+  +++G++G+GKst  ++l+gl+ p  ++G+ ++ g +i+  ++   rrnig+ pq  +Lf   t r+ i
  MMETSP1174-20130828|14873_1  22 KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFDKlTTREHI 104
                  7999*********************************994459**********86.77788**************632556655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.4e-11   9.7e-10       3     103 ..      10     106 ..       8     116 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.4e-11
    TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekp..saGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnval 103
                  ++e++ k++ g+++ a++++++++ +G++  l Gh GaGkst +++++g   p  ++G   + g +++     e+ + rr+iGi  q   l+ + t  + +++
  MMETSP1174-20130828|14873_1  10 QVEHLQKTF-GSFK-AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIK----SEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  567777776.5677.9*********************************9887447999999999985....688899*********9999988898888876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.5e-11   1.1e-09       3      94 ..      10     102 ..       8     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.5e-11
    TIGR03873   3 rlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapd..aGevdlagadlkalsrrararrvalveqdsdaevplsvrd 94 
                  +++++    g+   v+++  ++ +G++ +llG nG+Gkst +++l+Gl  pd   G+ ++ g+++k+    ar r++ +  q+     +l+ r+
  MMETSP1174-20130828|14873_1  10 QVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMHLAR-RNIGICPQHDVLFDKLTTRE 102
                  688999999*****************************************9744799*******998766665.56777777766666666665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.7e-11   1.2e-09       1      96 [.      11     103 ..      11     111 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.7e-11
    TIGR03608   1 lkniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgll..ekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveen 96 
                  +++++k+f++ + ++ +s+++ +G++ +++G+ G+GKst +n+l+ l   +++sg+ ++ g++      k++++l r ++g   q   L ++ t +e 
  MMETSP1174-20130828|14873_1  11 VEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLfpPDYNSGTTTIYGSN-----IKSEMHLARRNIGICPQHDVLFDKLTTREH 103
                  5799****************************************9884446789999999999.....45678999999**99999999999998775 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.1e-11   1.5e-09       3     103 ..       3     106 ..       1     112 [. 0.91

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.1e-11
    TIGR03258   3 aqatsGvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG..Grllvadrdlt.hlppykrnlallvqnyalfphlkveenvaf 103
                  + +t  v++e+l+ ++g+   ++ +s+++  G++++llG+ G+Gk+t + +++G+  +d   G+  + + ++   +   +rn+++  q   lf +l+  e + f
  MMETSP1174-20130828|14873_1   3 SLGTPAVQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYnsGTTTIYGSNIKsEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  568899**************************************************999777999999999862566789******************999877 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   5.5e-11   3.9e-09     283     337 ..      12      61 ..       3      95 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 5.5e-11
    TIGR03269 283 kdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvlept 337
                  ++++k +     G  kav+++s++++e++if l+G  GaGk+t+ ++l G+ +p 
  MMETSP1174-20130828|14873_1  12 EHLQKTF-----GSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPD 61 
                  4444443.....5568888888888888888888888888888888888888875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   4.6e-11   3.2e-09       6      72 ..      22      87 ..      18     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 4.6e-11
    TIGR01166  6 evlkglnlavergevlallGanGaGkstlllhlnGllrP..ksGkvlldGeeldysrkgllelrkkval 72
                 ++++g+++++ +g+  +llG+nGaGkst +++l+Gl+ P  +sG+ ++ G++++   +++  +r+++++
  MMETSP1174-20130828|14873_1 22 KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIK---SEMHLARRNIGI 87
                 6899**********************************95559*******9996...445555666655 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.2e-10   8.4e-09     497     575 ..      24     104 ..      19     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.2e-10
    TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaallenlYqPt..gGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNi 575
                  +++++f +  G++ +l G +G GKSt + +l  l+ P+  +G+ ++ g ++k  + +  +r++++  q  vlf + + re i
  MMETSP1174-20130828|14873_1  24 VNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFDKlTTREHI 104
                  5799*********************************6448**********86.88999**************863555655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.2e-10   1.6e-08     353     428 ..      21      97 ..       8     109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.2e-10
    TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydP..qsGailldGvdlreldpeelrerlalvpqdsalfaa 428
                   ka++g+++ + +G+  +l G  GaGkst +++l   + P  +sG+  + G ++++ + +  r+++ + pq+ +lf +
  MMETSP1174-20130828|14873_1  21 FKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFDK 97 
                  5799**********************************884469**********86.677889*************75 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   3.9e-10   2.8e-08      17     109 ..      20     109 ..       8     116 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.9e-10
    TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkp..tsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPll 109
                  + + ++g+s+++++g++ +++G+ G+Gkst + +l+gl  p   sG+ ++ G ++++     + +l  +++G   q   l+  +t  e + + +l
  MMETSP1174-20130828|14873_1  20 SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS-----EMHLARRNIGICPQHDVLFDKLTTREHIIFFSL 109
                  456799********************************8774469*******99975.....334555667777777777777777777766555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   5.6e-10     4e-08       2      57 ..       7      64 ..       6     100 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 5.6e-10
    TIGR02323  2 pllevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGe 57
                 p ++v++l k++gs k+++ +sf +y G++++++G  G+Gkst ++ l++ + +d  +
  MMETSP1174-20130828|14873_1  7 PAVQVEHLQKTFGSFKAVNgISFdMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNS 64
                 6789*********************************************988876433 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     1e-09   7.3e-08      17     100 ..      20     101 ..       9     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1e-09
    TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekp..tsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvf 100
                   +ka++ +s+ + +gqif ++g  gagkst i  +  l  p   sg+  + g ++    ++e+  arr+ig+  qh  l+   t  
  MMETSP1174-20130828|14873_1  20 SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNI----KSEMHLARRNIGICPQHDVLFDKLTTR 101
                  5789*****************************9999988744689999999987....578899***********7666555544 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.3e-09   8.9e-08     335     427 ..       9     102 ..       4     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.3e-09
    TIGR01192 335 vefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpk..sgqilidgvdiatvtreslrksiatvfqdagllnr.sire 427
                  v+ ++++  f  s + v  +sf++  gq  +++g  gagk+t in+l  ++ p+  sg  +i g +i++  +   r+ i    q   l+++ + re
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFG-SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMH-LARRNIGICPQHDVLFDKlTTRE 102
                  66677776665.66789**********************************9864479*********99654.56778888888888887634455 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.4e-09   9.8e-08       2     105 ..       9     106 ..       8     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.4e-09
    TIGR02982   2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglr..svqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrm 105
                  +++++l+  +g+ +     ++ i++++ +g+i  l G  G+Gk t +++++gl      +G+ +++g+++k    +e+   rr+iG+  q+  l++ lt+++ + +
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGSFK----AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFppDYNSGTTTIYGSNIK----SEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  66777777777654....467889999*************************97336789*******9986....578889*******************998865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     2e-09   1.4e-07      19      91 ..      29     104 ..      17     111 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2e-09
    TIGR01277  19 lsveaGervailGesGaGkstllnliaGflep..asGeikvndkdhtr.sapyerpvsmlfqennlfahltvrqni 91 
                  + + +G++ ++lG+ GaGkst +n+++G+  p   sG+ ++ + +  + +   +r + +  q + lf +lt r+ i
  MMETSP1174-20130828|14873_1  29 FDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKSeMHLARRNIGICPQHDVLFDKLTTREHI 104
                  45679************************9995569******9997651566899*****************9987 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.5e-09   2.5e-07     474     561 ..       9      96 ..       2     107 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.5e-09
    TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkff..qaesGeillngkslkdidkhelrqlinylPqePfifs 561
                  ++v++++  +G   ++++ is+++ + +  +l+G  G+Gkst + +l ++f  + +sG+ ++ g ++k  + h  r+ i   Pq+ ++f+
  MMETSP1174-20130828|14873_1   9 VQVEHLQKTFGSF-KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFppDYNSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFD 96 
                  7788888888854.6789*********************************88889***********86.89999*************97 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.7e-09   2.6e-07       2      69 ..      10      77 ..       9     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.7e-09
    TIGR01978  2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllel 69
                 ++++l+ +    + ++g++ ++ +G++  ++G nG+Gkst  ++l+g       sG+ ++ g+++ + 
  MMETSP1174-20130828|14873_1 10 QVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNSGTTTIYGSNIKSE 77
                 678888888889999*********************************999999**999999999743 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.1e-09   3.6e-07       2      51 ..      25      76 ..      24     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.1e-09
    TIGR01184  2 kdvdleikkgefislighsgcgkstllnliaglekp..tsgavilegkeite 51
                 +++++++ +g++ sl+gh g gkst +n+++gl  p   sg+ ++ g +i+ 
  MMETSP1174-20130828|14873_1 25 NGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS 76
                 689999***************************9984457888999988865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   5.2e-09   3.7e-07     330     405 ..      20      96 ..       4     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 5.2e-09
    TIGR01842 330 kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlp..asGsvrlDgadlkqwdretlGksiGYlPqdveLfe 405
                    k ++gisf + +G++ +++G  g+Gks+   +l+G ++p  +sG+  + g ++k  + +   ++iG  Pq   Lf+
  MMETSP1174-20130828|14873_1  20 SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS-EMHLARRNIGICPQHDVLFD 96 
                  44689**********************************863379*********985.677778899*9999877775 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     9e-09   6.3e-07     786     863 ..      31     110 ..      13     115 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 9e-09
    TIGR00956 786 vkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrklds...sFqRsiGYvqqqDlHletstvreaLrfsAyl 863
                  +  G++  L+G  GAGk t +n+L++     +   g+  + g +++s     +R+iG + q+D+  ++ t re ++f   l
  MMETSP1174-20130828|14873_1  31 MYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNS-GTTTIYGSNIKSemhLARRNIGICPQHDVLFDKLTTREHIIFFSLL 110
                  5679*********************988777766.44444444444301045799********************998777 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.1e-08   1.5e-06       6      96 ..      15     104 ..      10     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.1e-08
    TIGR02142   6 ekrlgdfeL..dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenL 96 
                  +k++g f+    +++++   ++ +l G+ G+Gk++ i++++GL  pd        +++  s+ k  +   +R++g+  q+  LF  l+ re +
  MMETSP1174-20130828|14873_1  15 QKTFGSFKAvnGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNS---GTTTIYGSNIKSEMHLARRNIGICPQHDVLFDKLTTREHI 104
                  5566666532246777766699**********************998643...33455555666667789*****************999865 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     2e-08   1.4e-06       2      66 ..      24      87 ..      23     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2e-08
    TIGR02770  2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreial 66
                 v+++++++ +g++ +l+G+ G+Gks+t   + gl +++    sG  ++ g ++++  +l  r+i++
  MMETSP1174-20130828|14873_1 24 VNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDY--NSGTTTIYGSNIKSEmHLARRNIGI 87
                 899*********************************886..4688888888887653566666655 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.2e-08   2.2e-06      23      76 ..      20      75 ..       8      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.2e-08
    TIGR02769 23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekP..akGevsfrGqdla 76
                   + ++++s+ + eG+  +llG+ GaGkst   +l Gl  P  ++G+ +  G +++
  MMETSP1174-20130828|14873_1 20 SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIK 75
                 556789********************************999444788888887764 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.8e-08     2e-06       8      66 ..      15      66 ..       8     115 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.8e-08
    TIGR02324  8 sktfilhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66
                 +ktf        + ++++ +s+++ +G++  l G+ GaGkst + +l + + p+  + +
  MMETSP1174-20130828|14873_1 15 QKTFG-------SFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDYNSGT 66
                 44443.......46789****************************99988877754444 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-07     1e-05       1      61 [.       9      71 ..       9     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.5e-07
    TIGR03005  1 vrisdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtlet..ideGsikveg 61
                 v+++++ k fg+++ ++g+++++ +G+  +l+G  G+Gkst + +l  l +   + G+  + g
  MMETSP1174-20130828|14873_1  9 VQVEHLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPpdYNSGTTTIYG 71
                 68899****************************************998854125566666655 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.2e-07   8.2e-06     473     545 ..      24      97 ..      13     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.2e-07
    TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPe..kGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr 545
                  ++ +s+d+ +G++  + G+ G+Gkst   +l  l+ P+   G   + g ++   +    rr++g+  q +vlf++
  MMETSP1174-20130828|14873_1  24 VNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIK-SEMHLARRNIGICPQHDVLFDK 97 
                  67899********************************7446999****9986.567888**************87 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-07     1e-05       1      65 [.      39     106 ..      39     116 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.5e-07
    TIGR01187   1 lLGpsGsGkttlLrllaGleeld..sGkilldgedvt.evpaekrsvnvvfqsyaLfPhmtveenvaf 65 
                  lLG  G+Gk+t + +l Gl  +d  sG   + g ++  e+   +r++++  q   Lf  +t  e + f
  MMETSP1174-20130828|14873_1  39 LLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKsEMHLARRNIGICPQHDVLFDKLTTREHIIF 106
                  89*****************988644899*******962677899******************999876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     2e-07   1.4e-05     454     537 ..      11      93 ..       5     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2e-07
    TIGR03797 454 vdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekP..esGsvlyDGqdlekldvqavRrqlGvVLQngr 537
                  v++++ ++   + + ++ +s+ + +G+  ++ G  G+GKSt + +L g   P  +sG+    G ++++ +++  Rr++G+  Q+  
  MMETSP1174-20130828|14873_1  11 VEHLQKTF--GSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKS-EMHLARRNIGICPQHDV 93 
                  55555555..55678899******************************99994458**********87.89999*****9988765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.3e-07   2.3e-05     494     565 ..      23      95 ..       7     109 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.3e-07
    TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaGlyep..wsGeilfDgkpreeiprevlanslalvdqdivlf 565
                   ++++s+++ +Gq   l G  G+Gkst   +++Gl+ p   sG+ ++ g + ++   +  +  + +  q+ vlf
  MMETSP1174-20130828|14873_1  23 AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKSE-MHLARRNIGICPQHDVLF 95 
                  5899********************************8744589888888776653.344555566666655555 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     4e-07   2.8e-05       3      59 ..      31      92 ..      29     107 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4e-07
    TIGR03771  3 vdkGellgllGpnGaGkttllrailglikv..akGsvkvagkssrk....grreiGyvpqrhe 59
                 + +G++ +llG nGaGk+t +  + gl ++  + G+  + g + ++    +rr+iG  pq h+
  MMETSP1174-20130828|14873_1 31 MYEGQIFSLLGHNGAGKSTTINMLTGLFPPdyNSGTTTIYGSNIKSemhlARRNIGICPQ-HD 92
                 5689***********************997336899999886543312226899**9999.44 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.7e-07   4.7e-05     356     410 ..      23      79 ..       3     104 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 6.7e-07
    TIGR01194 356 alGpidlriasGelvyivGenGcGkstliklllGlyipq..eGellldGeavsdesr 410
                  a+  i + + +G++  ++G nG Gkst i +l Gl+ p   +G   + G  + +e  
  MMETSP1174-20130828|14873_1  23 AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynSGTTTIYGSNIKSEMH 79 
                  4567889999**************************995337888888887777665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-06   0.00012      29      74 ..      13      58 ..       8     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-06
    TIGR03415 29 eildktGlvlgvadasldveeGeilvlmGlsGsGkssllravngln 74
                 ++++  G+  +v+++s+d+ eG+i  l+G  G+Gks+ +  + gl 
  MMETSP1174-20130828|14873_1 13 HLQKTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLF 58
                 6677889999***************************999988885 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.5e-06    0.0006     468     537 ..      23     105 ..      16     109 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.5e-06
    TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPv.yg...........glltkpeegklFyvPqrPYmslg.tlRdqii 537
                   ++ +sf++ +G+   ++G nG GKs    +l++l+P  y+              +  ++ ++   Pq+  +  + t R+ ii
  MMETSP1174-20130828|14873_1  23 AVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPdYNsgtttiygsniKSEMHLARRNIGICPQHDVLFDKlTTREHII 105
                  58999*******************************85255666666644332223334556666777766666667777766 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05   0.00074    1233    1304 ..      22      95 ..       4     104 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-05
    TIGR01271 1233 avlqdlsfsveagqrvgllgrtgsgkstllsallrllste...geiqidgvswnsvtlqkwrkafgvipqkvfil 1304
                     ++ +sf +  gq   llg  g+gkst +  l  l   +   g  +i g   +s  +   r+ +g+ pq+  ++
  MMETSP1174-20130828|14873_1   22 KAVNGISFDMYEGQIFSLLGHNGAGKSTTINMLTGLFPPDynsGTTTIYGSNIKS-EMHLARRNIGICPQHDVLF 95  
                   45688***********************999998888655222777777776666.4667789999999976555 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   9.3e-05    0.0066       9      45 ..      16      52 ..      12      55 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.3e-05
    TIGR00618  9 knltsykgeslidftalglklfvicGktGaGKtsLld 45
                 k ++s+k ++ i f     ++f   G +GaGK++ ++
  MMETSP1174-20130828|14873_1 16 KTFGSFKAVNGISFDMYEGQIFSLLGHNGAGKSTTIN 52
                 78************97656**************9876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017     0.012    1305    1373 ..      27      96 ..      21     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00017
    TIGR00957 1305 lnvtieggekvgivgrtgagkss...ltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfs 1373
                   ++  +  g+   ++g  gagks+   +  glf   +   g   i g ni k  +h  r ++ i pq  vlf 
  MMETSP1174-20130828|14873_1   27 ISFDMYEGQIFSLLGHNGAGKSTtinMLTGLFP-PDYNSGTTTIYGSNI-KSEMHLARRNIGICPQHDVLFD 96  
                   6777888999999********972224445665.4667899*******9.5689****************96 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00036     0.025       8      41 ..      39      70 ..      31      78 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00036
    TIGR00231  8 ivGhvdvGKstLlnsllknkisiteskpgvtrdy 41
                 ++Gh ++GKst++n l++   ++  +++g+t  y
  MMETSP1174-20130828|14873_1 39 LLGHNGAGKSTTINMLTGL--FPPDYNSGTTTIY 70
                 79************99984..4777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                       100  (0.0243784); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:01.15
# Mc/sec: 134.26
//
Query:       MMETSP1174-20130828|14867_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 813.34
//
Query:       MMETSP1174-20130828|14874_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 817.32
//
Query:       MMETSP1174-20130828|14870_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 1494.92
//
Query:       MMETSP1174-20130828|14872_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1576.11
//
Query:       MMETSP1174-20130828|14876_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 947.49
//
Query:       MMETSP1174-20130828|14877_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-15   51.9   0.0    6.9e-14   49.1   0.0    1.9  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.7e-17   6.9e-14     277     328 ..       2      53 ..       1      85 [. 0.89
   2 !    0.9   0.0    0.0072        29     388     426 ..     118     156 ..     112     159 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.7e-17
    TIGR01982 277 fFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykr 328
                  fFHaD+HpGNi+v + g++ ++DfG v  +se++rr la++++++  r++++
  MMETSP1174-20130828|14877_1   2 FFHADPHPGNIFVLETGEVGLIDFGQVKGVSEDSRRTLAKVMVALADRQSDQ 53 
                  9*********************************************998765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.0072
    TIGR01982 388 qpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkli 426
                  + +L+L+ +  +++ G++ +l  + +l++   p+ ++l+
  MMETSP1174-20130828|14877_1 118 PQDLVLVGRNTVLIKGIAARLGVTWSLAQQWAPIARQLL 156
                  6789***********************999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1174-20130828|14875_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 740.84
//
Query:       MMETSP1174-20130828|14879_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 783.94
//
Query:       MMETSP1174-20130828|14885_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1249.77
//
Query:       MMETSP1174-20130828|14893_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|14891_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 684.69
//
Query:       MMETSP1174-20130828|14894_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.70
# Mc/sec: 324.32
//
Query:       MMETSP1174-20130828|14901_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 238.43
//
Query:       MMETSP1174-20130828|14903_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1174-20130828|14900_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-15   54.0   0.5    1.8e-06   25.5   0.0    4.8  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      3e-13   46.4   0.2      3e-12   43.0   0.1    2.7  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.9e-12   43.9   2.1    1.8e-07   28.8   0.1    3.4  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00049   16.7   0.0       0.23    7.8   0.0    2.6  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.054        55     139     176 ..      12      49 ..       2      83 .. 0.83
   2 ?    2.8   0.1     0.016        16     188     225 ..     147     184 ..     124     189 .. 0.75
   3 !    5.6   0.0    0.0021       2.2      37     100 ..     297     360 ..     293     362 .. 0.93
   4 !   25.5   0.0   1.8e-09   1.8e-06      36      99 ..     400     463 ..     393     466 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.054
    TIGR02521 139 eNaglcalkagdtekaekyltralkidpkrpesllela 176
                    +g +  ++ + + a   l+ral+idp  +++l  l 
  MMETSP1174-20130828|14900_1  12 AELGKVHDHEDRSDSAVLWLRRALRIDPYCADALDWLF 49 
                  5677777888999999999********99998887665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.016
    TIGR02521 188 AralleryqqtveqtaesLwLgiriakalgdaaaakey 225
                  A  + e  +++++++ae Lw ++ria+a   a  a+e+
  MMETSP1174-20130828|14900_1 147 AVVYSEPNASMLAAQAEVLWYQVRIAEAHKVARRAYEL 184
                  44444445566799************998877777665 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0021
    TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  +++eYl+ ++ +  +  l  A  l  +d  +++ l+++  +  + e+A+++f k  tl + +gd
  MMETSP1174-20130828|14900_1 297 MGMEYLRTNNRTLSRLMLLSAERLCCQDPLVYNELGVMAFRAEDYEAAAHYFLKVFTLFNHSGD 360
                  599*************************************************999999888876 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 1.8e-09
    TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                  +L+    ++g  ++A +  ++Al ldpk+a++++al++    +g++++A  ++++Al+l p+++
  MMETSP1174-20130828|14900_1 400 NLGQCHRKRGRWKAALRCFNTALSLDPKNASTYSALGFTHHLIGNQDAAISAYHHALALRPDDT 463
                  566677789999*************************************************985 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1     3e-15     3e-12     171     505 ..     133     469 ..      10     475 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3e-15
    TIGR02917 171 aenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAaiqLkegkvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvk....ldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanL 505
                   e+k++e +a+v++++  + +n+  l+ ++++l ++  i+eA ++ r a el+p ++++l   + + le++   +       l+k+ pn     ++ +      ++ e A  ++ +a k +p + pa    G ++  + e e A    + +   +  sh+ +  + + +L+ ++ +     l  a+++  +d+ + + lG  + ++ d+e Aa y+ k+  l   +++ +++    ++   d s  i+  +t ++    ld+    a + L   + ++g+ + al   +  +   p nas+y  lg ++   ++++ A +a+  AL + pd+  ++  L
  MMETSP1174-20130828|14900_1 133 REEKVSEEKAAVSTAVVYSEPNASMLAAQAEVLWYQVRIAEAHKVARRAYELEPLNESVLPIYIASMLELKLKPQLYYCGHQLVKSWPNRAVSWFAVGCYYSLINRQELAQRHFMKATKLDPRFAPAWIGFGHAYALQDESESAMVMYRTASRLFQGSHLPLLFMGMEYLRTNNRTLSRLMLLSAERLCCQDPLVYNELGVMAFRAEDYEAAAHYFLKVFTLFNHSGDSEAATQSAHMVLSDDS--IETTQTTSAclgmLDDGCETAVFNLGQCHRKRGRWKAALRCFNTALSLDPKNASTYSALGFTHHLIGNQDAAISAYHHALALRPDDTLSAEML 469
                  5778999999999999999999999*********************************************99999999999************99999999999999******************999999988888888888888888889999999*************************************************************9986666555555555555555555..444444433222378888888999999999******************************************************998877665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.5e-05     0.015      37     119 ..     242     324 ..     226     335 .. 0.90
   2 !   28.8   0.1   1.8e-10   1.8e-07      42     129 ..     385     472 ..     354     476 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
    TIGR02552  37 AeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                  A++ F   + ldp  a  w+g + ++  ++e e A+ +Y  a  l   ++ p++  +  +l  +++  ++  L  a +++ ++
  MMETSP1174-20130828|14900_1 242 AQRHFMKATKLDPRFAPAWIGFGHAYALQDESESAMVMYRTASRLFQGSHLPLLFMGMEYLRTNNRTLSRLMLLSAERLCCQD 324
                  77778888889999999***************************************************999999888887654 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.8e-10
    TIGR02552  42 qlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkera 129
                  + L +ld   +  ++ L+ c+ + ++++ A+ ++  a++ld+++++ + +++  + ++g++  A +a   a+++  +++  +e+  ra
  MMETSP1174-20130828|14900_1 385 ACLGMLDDGCETAVFNLGQCHRKRGRWKAALRCFNTALSLDPKNASTYSALGFTHHLIGNQDAAISAYHHALALRPDDTLSAEMLSRA 472
                  567888888899999**********************************************************999999888887777 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00087       0.9     349     464 ..     173     288 ..     142     296 .. 0.74
   2 !    7.8   0.0   0.00023      0.23     364     435 ..     394     465 ..     337     485 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00087
    TIGR00990 349 ealadlsksieldPrltqsy..ikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfp 464
                  ea++  +++ el+P  ++s   i+ as+   + +++ ++   ++ +k  ++ +  ++  +    + +  + a++ + k+ +ldp f  ++i ++     +++ +s++ ++r a + f+
  MMETSP1174-20130828|14900_1 173 EAHKVARRAYELEPL-NESVlpIYIASMLELKLKPQLYY-CGHQLVKSWPNRAVSWFAVGCYYSLINRQELAQRHFMKATKLDPRFAPAWIGFGHAYALQDESESAMVMYRTASRLFQ 288
                  677777777788774.44543467777644444444443.344555555666555666666666666667799999999999999999999999877777888999999999999886 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00023
    TIGR00990 364 ltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifs 435
                   + +  +      ++g  + a   f+ al +d+++++ y   +  h + g+ + a   y+ +  l pd  +s
  MMETSP1174-20130828|14900_1 394 CETAVFNLGQCHRKRGRWKAALRCFNTALSLDPKNASTYSALGFTHHLIGNQDAAISAYHHALALRPDDTLS 465
                  444555555555667777778888999999999999999999999999999999999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.57
# Mc/sec: 1317.62
//
Query:       MMETSP1174-20130828|14905_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|14907_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 305.22
//
Query:       MMETSP1174-20130828|14904_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   23.7   0.0      0.046   11.2   0.0    2.1  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    7.2e-05   20.1   0.0     0.0027   15.0   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
  ------ inclusion threshold ------
      0.025   11.7   0.0      0.037   11.2   0.0    1.2  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.2e-05     0.071       3      95 ..     138     237 ..     137     247 .. 0.74
   2 !   11.2   0.0   3.4e-05     0.046     179     232 ..     267     321 ..     259     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.2e-05
    TIGR01738   3 gvkklvLihGWglnaevfadlveeLsah..ftlslvDLPGyGdsael.....ralslaev.aeaila.qapakaiwlGWsLGGLvalhlalthpdkvrsLvl 95 
                  g++ ++  hG + + +v  ++ ++L+ +    + +v+  GyG+s+       +  +++++  +a++  +  ++ i+lG s+G     hla+ h   vr++vl
  MMETSP1174-20130828|14904_1 138 GNPLIMYAHGNATDCGVMLPIYDKLRRKtgCAILAVEYAGYGESTGTpsaknTRWNIEAAySKALALgHEKHDIILLGQSIGSAPVCHLAALHQ--VRGVVL 237
                  66677889*****************9762257899*******98765111114456765525666542555668899*************9984..677765 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.4e-05
    TIGR01738 179 DlRralqkisvPvLrlyGqkDalvPakvvealdkl.apqsellvlekaahaPfls 232
                  D  r ++ +  PvL ++G+ D  vP + +++l +  +++ e + +++a+h+  + 
  MMETSP1174-20130828|14904_1 267 DNLRSIKAVRSPVLIIHGTADDEVPMEHGRMLYENcMQRYEPYWVDGAGHSDVVE 321
                  66678999***********************97651568899********87664 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0086        12      13     109 ..     139     237 ..     131     243 .. 0.74
   2 !   15.0   0.0     2e-06    0.0027     184     250 ..     267     335 ..     252     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0086
    TIGR02427  13 kpvlvlinSLGtdlrlwdkvlealtkd..frvlryDkrGHGlS....dvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvl 109
                  +p++++     td  +  ++ ++l+++   ++l+++  G G+S    ++ ++   ie   +  lal    + +++ ++G S+G +   +Laa +  +v+ +vl
  MMETSP1174-20130828|14904_1 139 NPLIMYAHGNATDCGVMLPIYDKLRRKtgCAILAVEYAGYGEStgtpSAKNTRWNIEAAYSKALAL--GHEKHDIILLGQSIGSAPVCHLAALH--QVRGVVL 237
                  6677777777788888888888887762268999********965544555666666666665555..4567889999*****99999999988..7777776 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2e-06
    TIGR02427 184 dlrerleeiavPtlviaGdeDgstPpelvreiadlvpg.arfaeieeaaHlpnleq.peafaallrdfl 250
                  d    +++++ P+l+i G+ D   P e+ r + +   +  +   +++a+H   +e+ p+++ +++++f+
  MMETSP1174-20130828|14904_1 267 DNLRSIKAVRSPVLIIHGTADDEVPMEHGRMLYENCMQrYEPYWVDGAGHSDVVEKnPDEYFRRIIAFI 335
                  556778999***********************987654156678999*****999549*******9998 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05     0.037      55     133 ..     165     241 ..     159     252 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
    TIGR03100  55 eaGlpvlRfDyrGmGDsegelstFedieaDiaAAidafleaapeleeivlwGlCDaAsAvllyatadervaglvllnPW 133
                  ++G ++l  +y G G+s+g+  + ++ + +i+AA    l+   e ++i+l G   + + v+    a ++v g+vl  P 
  MMETSP1174-20130828|14904_1 165 KTGCAILAVEYAGYGESTGT-PSAKNTRWNIEAAYSKALALGHEKHDIILLGQSIGSAPVCHL-AALHQVRGVVLHSPI 241
                  67999*************97.56799**********9999999**********9999888887.5566899***99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1201.80
//
Query:       MMETSP1174-20130828|14908_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 861.60
//
Query:       MMETSP1174-20130828|14910_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-05   21.2   0.0    5.1e-05   20.7   0.0    1.2  1  TIGR02069 cyanophycinase: cyanophycinase


Domain annotation for each model (and alignments):
>> TIGR02069  cyanophycinase: cyanophycinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.2e-08   5.1e-05      60     130 ..     228     299 ..     211     336 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.2e-08
    TIGR02069  60 vkildvkeRedaskeeeiallskadgifftGGDqlRitsllkdtpllarlrkrvkeG.iilgGtsaGaavms 130
                  v+ ++v++ +++s +e  al++++ ++++ GGD   +++ +k +++ a +r + + G +i++G sa   v +
  MMETSP1174-20130828|14910_1 228 VDAVSVRDMKHSSPSELQALVERSVVVYLLGGDTNLLMTRIKHANFAALMRPELQAGrTIYVGRSASTMVAG 299
                  7889999999999********************************************9999****9765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1391.89
//
Query:       MMETSP1174-20130828|14917_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|14914_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 907.43
//
Query:       MMETSP1174-20130828|14918_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|14915_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1153.96
//
Query:       MMETSP1174-20130828|14921_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|14922_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.65
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|14916_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.64
# Mc/sec: 734.19
//
Query:       MMETSP1174-20130828|14924_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 603.38
//
Query:       MMETSP1174-20130828|14925_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1100.98
//
Query:       MMETSP1174-20130828|14926_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1132.91
//
Query:       MMETSP1174-20130828|14928_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62    6.8   7.7       0.66    6.7   5.3    1.0  1  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit


Domain annotation for each model (and alignments):
>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.3   0.00016      0.66      70     138 ..       4      66 ..       1      68 [. 0.87

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00016
    TIGR01730  70 kaqlaaaeaqlelakkqleRaerLvkrsavsqaelddakaaleaaqaqlkaakaslasaranLskteir 138
                  ++++ + e +l+  +++l+   +L+++s+++++++ d+ ++l + +a      a l++ +++L++te++
  MMETSP1174-20130828|14928_1   4 EETVLEDEQKLQRVEQTLRLECELASKSLAAEKQYSDRVTQLLKEEA------ADLEDSERELAQTELK 66 
                  5677888999999999999999*******************999999......5899999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.24s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|14932_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1174-20130828|14935_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   13.8   0.0     0.0089   13.4   0.0    1.2  1  TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein


Domain annotation for each model (and alignments):
>> TIGR01096  3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.2e-06    0.0089      94     175 ..      87     168 ..      33     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-06
    TIGR01096  94 tdkrekaiaFsdpyyadgqgfvvkkdsklaktledLd..GkkvgvqsGttteqflkdefkasvdiveydsldevnldlkaGriD 175
                  +++r+++++F+++y + + +++v ++s+l +  + +d  G +++++ G   +  l+ ++k + +i + dsld   l  +a r+D
  MMETSP1174-20130828|14935_1  87 EPQRAQVMDFTAAYCEIECTYLVPENSPLRSFHD-IDqpGIRIASKGGGAYDLWLQRNIK-NAEIIQADSLDGPXLVSDAERLD 168
                  689************************9999888.8889*********************.88888888777666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 973.42
//
Query:       MMETSP1174-20130828|14936_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.50
# Mc/sec: 121.43
//
Query:       MMETSP1174-20130828|14934_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 509.62
//
Query:       MMETSP1174-20130828|14933_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-17   60.5   0.0    2.2e-07   28.3   0.1    3.8  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      3e-09   34.2   0.0    6.2e-07   26.6   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.5e-07   29.1   0.0    2.1e-06   25.4   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.4e-06   25.3   0.0    0.00016   18.6   0.0    2.4  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      2e-05   21.6   0.0      0.016   12.0   0.0    2.4  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0013   15.7   0.0     0.0027   14.7   0.0    1.5  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0014   15.6   0.0      0.004   14.2   0.0    1.7  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0058   14.3   0.1      0.018   12.7   0.1    1.9  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.049   10.3   0.0    1.9  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      0.032   11.4   0.2      0.061   10.5   0.1    1.4  1  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.1e-07   0.00013      20      99 ..     196     287 ..     187     302 .. 0.82
   2 !   28.3   0.1   5.4e-10   2.2e-07     103     163 ..     368     435 ..     303     442 .. 0.61
   3 !    8.1   0.0   0.00078      0.32     160     270 ..     456     584 ..     450     588 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.1e-07
    TIGR03596  20 klvDvvievlDARiplssknpeleelvk............nkprlivlnkaDladpektkkwlkyfeekgkkalavnakkkkkvkkilkaik 99 
                  ++  v+i+v+DAR pl    ++l+++++            + +rl++lnkaD   +++ + w ++++ kg k+++++ak +++  ++++ + 
  MMETSP1174-20130828|14933_1 196 ERSHVLIQVVDARQPLFYYSEQLHDYARrhwrgkgygpaeRVERLMILNKADFLTRAQRRVWARTLKGKGLKFVWFSAKVEQEKLNLAERAA 287
                  556799**********9999999988764444444444434579***********************************9999888877665 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 5.4e-10
    TIGR03596 103 kekkeklkakglkkkairalvvGiPNvGKStliNrlak.......kkvakvgnkpgvTksqqwiklsk 163
                  +++k+ +++   +++++ + +vG PNvGKS++iN l++          + +g++pg Tk+ q++ l++
  MMETSP1174-20130828|14933_1 368 EDEKKDDAEDKKRETSLTVGMVGYPNVGKSSVINVLLGvtplshgSARVATGATPGKTKHLQTLILRS 435
                  222222233334577899999***************863333222678899**********9987765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00078
    TIGR03596 160 klskeleLlDtPGilwpkledeevglkLa...ltgaikdeildkeevalfllellkek.............ypeelkerykleeeeeeeeelleeiakkrgl..llkggeldleraaeillkelrkgkl 270
                  + s +l+L+D PG+++p++ ++++ +  a    + +++d+  ++e +++ + + + e+              ++ l    +  ++ ++ ee+l  i+  r +    ++ge+d +r+a++++++l  gkl
  MMETSP1174-20130828|14933_1 456 TASAGLTLCDCPGLVFPHFVNSAAEMVCAgvlPVSQLRDHTAPMEIITTRIPRAVLEAtygfksnfdskkgGSNWLDGLSDELNTYMTVEEVLVGIGIARSWkaAGNKGEVDRNRVARMVITDLACGKL 584
                  5677899**********9988766554441115688899999999999999888888777877776655443333333333333333777888877766665105566889999********9999887 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0042       1.7     253     312 ..     193     261 ..     180     285 .. 0.72
   2 !   26.6   0.0   1.5e-09   6.2e-07     151     198 ..     347     406 ..     320     438 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0042
    TIGR03594 253 kaieradvvllvlDategiseqDlkiaglileegkal..........vivvNKwDlvkdekeleelkkel 312
                  +++er++v + v+Da++++  + +++ +++ ++ ++           ++++NK D + ++++++ + ++l
  MMETSP1174-20130828|14933_1 193 RVVERSHVLIQVVDARQPLFYYSEQLHDYARRHWRGKgygpaerverLMILNKADFL-TRAQRRVWARTL 261
                  7899*************************9997665222333333336778888887.555555555554 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.5e-09
    TIGR03594 151 dLldeileelpeeee............eeeeeeeeepikiaiiGrpNvGKStLvNallge 198
                  dL ++ +++ +++e+            ++e++++e+++ ++++G pNvGKS+ +N llg 
  MMETSP1174-20130828|14933_1 347 DLSSKTTTTTSADEQqdeqgredekkdDAEDKKRETSLTVGMVGYPNVGKSSVINVLLGV 406
                  5555544444333332233333322222233333568********************974 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.23        93     104     173 ..     201     274 ..     187     285 .. 0.66
   2 !   25.4   0.0   5.2e-09   2.1e-06      13      59 ..     378     430 ..     371     439 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.23
    TIGR03598 104 vvllvDirhelkelDlellellkea..........kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSsl 173
                  ++++vD+r++l    ++l ++++++          +++ l++l+KaD l++++++  ++++k     +    ++++fS++
  MMETSP1174-20130828|14933_1 201 LIQVVDARQPLFYYSEQLHDYARRHwrgkgygpaeRVERLMILNKADFLTRAQRRVWARTLK----GK--GLKFVWFSAK 274
                  67777788777777777777777655555555544788899999999999887765444433....33..2245555555 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 5.2e-09
    TIGR03598  13 lpedklpeiafaGrSNvGKSsliNaLtnrkkl....ar..tSktPGrTqlinf 59 
                   ++++   + ++G+ NvGKSs+iN+L++   l    ar  t  tPG+T+++  
  MMETSP1174-20130828|14933_1 378 KKRETSLTVGMVGYPNVGKSSVINVLLGVTPLshgsARvaTGATPGKTKHLQT 430
                  5567778899****************99766522224422557******9976 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0     0.009       3.7     299     346 ..     234     285 ..     185     289 .. 0.60
   2 !   18.6   0.0   3.8e-07   0.00016     174     211 ..     368     405 ..     313     417 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.009
    TIGR03156 299 aeeipvllvlNkidkleeeeleeleekk....eeavlvsAkkgegleeLlea 346
                  ae++++l++lNk+d l++++ +  +++      + v+ sAk +++  +L+e+
  MMETSP1174-20130828|14933_1 234 AERVERLMILNKADFLTRAQRRVWARTLkgkgLKFVWFSAKVEQEKLNLAER 285
                  677899*********99555444333332224779******99988888776 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.8e-07
    TIGR03156 174 ekqreeqrkkrkksevptvalvGYTNaGKstllnaltk 211
                  e++++   + +k+++  tv++vGY N GKs+++n l +
  MMETSP1174-20130828|14933_1 368 EDEKKDDAEDKKRETSLTVGMVGYPNVGKSSVINVLLG 405
                  445666778899999********************986 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0014      0.56     229     320 ..     191     282 ..     182     289 .. 0.78
   2 !   12.0   0.0   3.9e-05     0.016     159     177 ..     385     403 ..     316     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0014
    TIGR02729 229 FLkHiertrvllhlidlsee..dekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleel 320
                    + +er++vl++++d+++     ++ ++d+   +   k y +  ++ ++l++lnk+d l++++ +  +++lk + + k++ +sa  +++  +l
  MMETSP1174-20130828|14933_1 191 LWRVVERSHVLIQVVDARQPlfYYSEQLHDYARRHWRGKGYGP-AERVERLMILNKADFLTRAQRRVWARTLKGK-GLKFVWFSAKVEQEKLNL 282
                  56889************98622456899999999999999998.577799***********99888888888877.577777777666555555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.9e-05
    TIGR02729 159 dvglvGlpnaGkStllsav 177
                   vg+vG+pn+GkS++++++
  MMETSP1174-20130828|14933_1 385 TVGMVGYPNVGKSSVINVL 403
                  69**************986 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       3.5   1.4e+03     286     309 ..     195     218 ..     193     225 .. 0.74
   2 !   14.7   0.0   6.6e-06    0.0027     203     230 ..     377     404 ..     320     407 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 3.5
    TIGR00450 286 ikeadlvlyvlDaskpltkddeli 309
                  ++++ +++ v+Da++pl    e++
  MMETSP1174-20130828|14933_1 195 VERSHVLIQVVDARQPLFYYSEQL 218
                  67788999*******986555555 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6.6e-06
    TIGR00450 203 leklkdglklaivGktNvGKSSLlNall 230
                   +k+++ l + +vG +NvGKSS++N+ll
  MMETSP1174-20130828|14933_1 377 DKKRETSLTVGMVGYPNVGKSSVINVLL 404
                  36999********************997 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2     5e+02      93     109 ..     238     254 ..     232     258 .. 0.83
   2 !   14.2   0.0   9.8e-06     0.004     151     179 ..     378     407 ..     298     439 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.2
    TIGR03597  93 kvllvvNKidllpksvk 109
                  + l++ NK d+l ++++
  MMETSP1174-20130828|14933_1 238 ERLMILNKADFLTRAQR 254
                  5689********98865 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 9.8e-06
    TIGR03597 151 kare.kkdvyvvGvtNVGKSsliNkllkln 179
                  k+re    v +vG  NVGKSs+iN ll  +
  MMETSP1174-20130828|14933_1 378 KKREtSLTVGMVGYPNVGKSSVINVLLGVT 407
                  333334457789*************99654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   4.3e-05     0.018       5      27 ..     385     407 ..     381     436 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.3e-05
    TIGR00231   5 kivivGhvdvGKstLlnsllknk 27 
                   +++vG ++vGKs+ +n ll+ +
  MMETSP1174-20130828|14933_1 385 TVGMVGYPNVGKSSVINVLLGVT 407
                  79*****************9987 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.36   1.5e+02     114     162 ..     235     285 ..     193     301 .. 0.78
   2 ?   10.3   0.0   0.00012     0.049       5      29 ..     381     405 ..     377     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.36
    TIGR03918 114 kkipvivvlnkidlkeeeke..keklekkkeeevvlvsakekegieelkea 162
                  +++  +++lnk+d  +++++  ++++ k k+ ++v+ sak +++  +l e+
  MMETSP1174-20130828|14933_1 235 ERVERLMILNKADFLTRAQRrvWARTLKGKGLKFVWFSAKVEQEKLNLAER 285
                  457788999999998887766788888889999999999988876666655 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00012
    TIGR03918   5 aerlhialfGrrNaGKSsliNaltg 29 
                   + l+++++G  N+GKSs+iN l+g
  MMETSP1174-20130828|14933_1 381 ETSLTVGMVGYPNVGKSSVINVLLG 405
                  56789*****************986 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00015     0.061       2      22 ..     385     405 ..     384     413 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
    TIGR00436   2 fvailGrpnvGKSTLlNkllg 22 
                   v+++G pnvGKS ++N llg
  MMETSP1174-20130828|14933_1 385 TVGMVGYPNVGKSSVINVLLG 405
                  699***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:01.09
# Mc/sec: 966.31
//
Query:       MMETSP1174-20130828|14939_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|14931_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.6e-127  420.1   0.4   1.2e-113  377.0   0.2    2.0  2  TIGR00465 ilvC: ketol-acid reductoisomerase
    0.00034   17.4   0.1    0.00058   16.6   0.1    1.3  1  TIGR00936 ahcY: adenosylhomocysteinase
     0.0051   13.9   0.0      0.045   10.8   0.0    2.1  2  TIGR01420 pilT_fam: twitching motility protein
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.018   11.8   0.0    1.2  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase


Domain annotation for each model (and alignments):
>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.0   0.2  1.2e-116  1.2e-113       1     312 [.      72     404 ..      72     406 .. 0.97
   2 !   49.0   0.0   8.8e-17     9e-14     179     310 ..     392     520 ..     387     524 .. 0.90

  Alignments for each domain:
  == domain 1    score: 377.0 bits;  conditional E-value: 1.2e-116
    TIGR00465   1 lkgkkvaiiGyGsqGeaqalnlrdsglnvivglrkea.....aswkkAeedGfkvltveeaikkadlimiLlpDevqkevyeaeikpllkegkallfsHGfnivfkqivipkdvdvvlvAPKgpGalvReeykegrGvpsliAve..qdvtgeakeiAlayAkaiGgaragvlettFkeEvesDLfGEqavLcGglealikaafdtLveaGyqpelAyfeivhelklivdllkekGlelmrdavsntAklgalelreilkeelkkemqkilkeiqnGefak....ewalek........eagkpafeearkke...keqeiekvGkelralvka 312
                  +++kkv+i+G+G+qG +q+ln+rdsg +v+++lr++a     as+ +Ae + f v t+e++i++adl+++L+pD+ q++ +++ i+pl+k+g++l +sHGfniv++++++++d++vv+vAPK+pG++vReeyk+g+Gvp+liAv+  +d++ge+ +iA+ayA a+Gg ragvle++F++Ev+sDL+GEq++LcG+l+ +  ++fd++v +G +  +A ++i++++++i+++lk++G+++m+d++ n+ k++a++l+e lk  +++ ++k+ ++i++G+f++    +w +++        e++++ fe+++  +   +eqe++++ + + a+vka
  MMETSP1174-20130828|14931_1  72 IADKKVVIVGCGAQGLNQGLNMRDSGCDVSYALRQSAidekrASYVNAESNNFAVGTYEDLIPQADLVLNLTPDK-QHTMVVNAIMPLMKQGATLAYSHGFNIVEEGMQVREDLTVVMVAPKCPGTEVREEYKRGFGVPTLIAVHpvNDPKGEGLAIAKAYASATGGDRAGVLESSFVAEVKSDLMGEQTILCGMLQTGAVLSFDKMVSKGIDAGYASKLIQYGWETITEALKHGGITGMMDRLDNPSKIKAFDLSEELKGIMRPLYNKHQDDIITGHFSStmmaDWDNGDvdllkwraETAETGFEKTPAGDvtiSEQEYFDNAVLMVAMVKA 404
                  579*********************************999999*********************************.88888888************************************************************94447***********************************************************************************************************************************9888888888899****99999********999999***************997 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 8.8e-17
    TIGR00465 179 fGEqavLcGglealikaafdtLveaGyqpelAyfeivhelklivdllkekGlelmrdavsntAklgalelreilkeelkkemqkilkeiqnGefakewalekeagkpafeearkkekeqeiekvGkelralv 310
                  f + + ++ +++a++++af+ +v+ G +pe Ay e +he  li++ + +k l +m + +s+tA++g +   +  k  l+  m+ki  +++  ++       + +++ ++++ +++ +++ +e +G elr  +
  MMETSP1174-20130828|14931_1 392 FDNAVLMVAMVKAGVELAFEAMVNVGIKPESAYYESLHETPLIANTIARKKLFEMNSVISDTAEYGCYLYDQACKPLLADFMSKIDTDVIGTKYNT---GSNGVDNRHLNSVNEAIRNHPVEIIGTELRGYM 520
                  555667789***********************************************************9999999999999999999999777766...455678899********************9766 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.7e-07   0.00058     203     296 ..      72     173 ..      63     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.7e-07
    TIGR00936 203 iaGktvvvaGyGwvGkGvaerlrGlGarviv....tevdpika..leaamdGfevvtmeeaakegdifvtatGnkd..vireehlekmkdgailanaGhfdv 296
                  ia k+vv++G G  G      +r  G +v+     + +d+ +a  ++a  + f v t e+ + ++d+++  t +k+  ++ +  +  mk+ga la +  f++
  MMETSP1174-20130828|14931_1  72 IADKKVVIVGCGAQGLNQGLNMRDSGCDVSYalrqSAIDEKRAsyVNAESNNFAVGTYEDLIPQADLVLNLTPDKQhtMVVNAIMPLMKQGATLAYSHGFNI 173
                  899**********99766666666666665412225799999866899********************9999876423677888999********9999996 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   4.3e-05     0.045     278     324 ..     423     469 ..     410     480 .. 0.89
   2 ?    0.2   0.0     0.071        72     185     211 ..     497     527 ..     489     529 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.3e-05
    TIGR01420 278 laveilvntpavreliregkteqikevlqegakeGmqtldqslaklv 324
                  + +e l +tp+++++i  +k+ ++++v+ + a++G    dq+ + l+
  MMETSP1174-20130828|14931_1 423 AYYESLHETPLIANTIARKKLFEMNSVISDTAEYGCYLYDQACKPLL 469
                  67889999*********************************977665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.071
    TIGR01420 185 anaLraalRedP.Dvi...lvGElRDletve 211
                   n++ +a+R+ P ++i   l G +RD+et++
  MMETSP1174-20130828|14931_1 497 LNSVNEAIRNHPvEIIgteLRGYMRDMETIS 527
                  567888999999445555567899*****97 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.8e-05     0.018       1      53 [.      76     128 ..      76     143 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.8e-05
    TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemgl 53 
                  kv ivg+g  gl   +++ d+g++v     +s +  k  s+v+ + n   +g 
  MMETSP1174-20130828|14931_1  76 KVVIVGCGAQGLNQGLNMRDSGCDVSYALRQSAIDEKRASYVNAESNNFAVGT 128
                  799***********************99999****************988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 1148.95
//
Query:       MMETSP1174-20130828|14941_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:01.11
# Mc/sec: 344.84
//
Query:       MMETSP1174-20130828|14943_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|14942_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 818.33
//
Query:       MMETSP1174-20130828|14944_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   30.5   3.2    1.2e-06   25.9   0.5    2.1  2  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
      0.025   12.1   0.7       0.39    8.3   0.0    2.4  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain
      0.029   12.2   0.1      0.075   10.9   0.0    1.6  1  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2    0.0014       1.8     169     238 ..      33      99 ..       2     111 .. 0.65
   2 !   25.9   0.5   8.5e-10   1.2e-06     128     221 ..     108     197 ..      93     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0014
    TIGR00599 169 dkdyrsekpdedlvqCPiCsqlvkekaverhldseClgspsagasktkPieskdssksssrlsfktvdks 238
                   ++   ++   + ++C +C++ +  + +  h    C  +++   s+ kP + +  ++ +s +++ ++  +
  MMETSP1174-20130828|14944_1  33 GEELSGREMSGGRMKCAVCGRGFAMDRIAVHQRI-CFKLKDK-RSRVKPFNIR-RQRMNSEMKIAAKTAT 99 
                  23333335667889***************99998.****887.99******99.7788888877443333 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 8.5e-10
    TIGR00599 128 eakgvdeeseddlrsasssraaakkktadilqlssdtskrndkdyrsekpdedlvqCPiCsqlvkekaverhldseClgspsagasktkPiesk 221
                  ++++   ++ + +r+ + sr+  +k  ++    s++  ++nd+dy  +   +++vqCP Cs+ + e a  rh  s C ++++   +  kP +sk
  MMETSP1174-20130828|14944_1 108 SPSKWRRQHLEFQRAIQGSRGGGEKAVSQAAGASQN-QRSNDQDYGGD-VTDGMVQCPHCSRTFSETAAARHIPS-CKNTRNR-PKAFKPRASK 197
                  444445555566777788899888888888877777.899*****955.59***********************9.****887.4566777776 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.034        46      23      35 ..      43      55 ..      40      57 .. 0.82
   2 ?    8.3   0.0   0.00028      0.39      23      35 ..     157     169 ..     147     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.034
    TIGR02098 23 ggkVRCgkCghvw 35
                 gg+ +C+ Cg  +
  MMETSP1174-20130828|14944_1 43 GGRMKCAVCGRGF 55
                 8999*****9765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00028
    TIGR02098  23 ggkVRCgkCghvw 35 
                  +g V C++C+ ++
  MMETSP1174-20130828|14944_1 157 DGMVQCPHCSRTF 169
                  5678888888888 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.4e-05     0.075      53      89 ..     153     188 ..     147     195 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.4e-05
    TIGR02377  53 glvedtevecpkhagafdyrtgealrapvcvnlktyp 89 
                  g v d +v+cp+ + +f   t +a++ p c+n +  p
  MMETSP1174-20130828|14944_1 153 GDVTDGMVQCPHCSRTFS-ETAAARHIPSCKNTRNRP 188
                  668999*****9999997.899**********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.65
# Mc/sec: 661.98
//
Query:       MMETSP1174-20130828|14947_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-17   59.8   0.0    7.1e-17   59.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.025   11.8   0.1      0.045   11.0   0.1    1.3  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   3.5e-20   7.1e-17       4     161 ..      19     175 ..      17     178 .. 0.97

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 3.5e-20
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfkl 161
                  +ki+++G+ +vGK+tL   + +   + + ++p+++ ++ ++ i+ + +++  +++D aG +++++++r     v + l  ++  ++ ++++++   ++  +  +  + gv ++lv++ iD+ d  ++ +++++ +a +   p+ e sa++ +n++++f +
  MMETSP1174-20130828|14947_1  19 RKIAVLGFRAVGKTTLATHFVEGR-FVERYDPTIENTFQKT-IRFKKVQFFTEIVDSAGMDEYSRLSRNASVGVHGYLLLYSTGNR-NSFDQIQAIDDLLLDMHGGSHGVARVLVATMIDQDDqrQVTYEEGQALADSRHIPYLECSAKENMNVTEVFTT 175
                  79**********************.***************9.********************************************.********************************************************************99976 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.2e-05     0.045      56     101 ..     102     147 ..      98     156 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.2e-05
    TIGR03633  56 aesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdep 101
                  ++s ++i+ iDd +     G  + arvl+ +   ++ ++++tY+e 
  MMETSP1174-20130828|14947_1 102 RNSFDQIQAIDDLLLDMHGGSHGVARVLVATMIDQDDQRQVTYEEG 147
                  6899***************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 670.10
//
Query:       MMETSP1174-20130828|14945_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1068.60
//
Query:       MMETSP1174-20130828|14950_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.1   0.0     0.0002   18.5   0.0    1.1  1  TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
    0.00047   17.2   0.0     0.0007   16.6   0.0    1.2  1  TIGR03723 bact_gcp: putative glycoprotease GCP
     0.0019   14.2   0.0     0.0026   13.8   0.0    1.1  1  TIGR00143 hypF: carbamoyltransferase HypF


Domain annotation for each model (and alignments):
>> TIGR00329  gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-07    0.0002     226     293 ..     207     272 ..     197     280 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
    TIGR00329 226 leeaelediaysfqeavidhliektkralkkkelkelvlaGGvsaNkrLrekleelleelnvefylpp 293
                    +++  ++a+s+q+   + ++   k+  k+++ ++l laGGv++N+ L   l++++  ++ ++y+pp
  MMETSP1174-20130828|14950_1 207 ALRRHYTSMAASIQNDLEEAILGLAKDLRKHTGATTLCLAGGVAQNSVLNGILAREA-GFE-KTYVPP 272
                  55678899*******************************************999998.444.578877 PP

>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-07    0.0007     231     283 ..     211     263 ..     201     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.1e-07
    TIGR03723 231 ekadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsalrekleela 283
                  + + +aas+q+ + ++++  +k+  k+t+++tl++aGGva Ns l   l+++a
  MMETSP1174-20130828|14950_1 211 HYTSMAASIQNDLEEAILGLAKDLRKHTGATTLCLAGGVAQNSVLNGILAREA 263
                  45789****************************************99888775 PP

>> TIGR00143  hypF: carbamoyltransferase HypF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.9e-06    0.0026     665     738 ..     216     285 ..     204     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-06
    TIGR00143 665 aliakkfvasGlvelileiaekagiekivisGGvfynkllleevakalkeegfellfpkelpagDggislGqav 738
                  a  +++ + + +  l++++ +++g +++ ++GGv +n +l   +a+++    fe  +    ++gD gislG a+
  MMETSP1174-20130828|14950_1 216 AASIQNDLEEAILGLAKDLRKHTGATTLCLAGGVAQNSVLNGILAREAG---FEKTYV-PPCPGDEGISLGCAL 285
                  5555666777889999************************999987766...555544.3489********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1536.21
//
Query:       MMETSP1174-20130828|14953_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   21.8   0.7    2.5e-05   21.6   0.5    1.1  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.5   6.1e-09   2.5e-05     151     266 ..       2     119 ..       1     140 [. 0.67

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.1e-09
    TIGR00569 151 kfsLlvhnPyrPleGFllD.iktvlpkleneevlrkiadkflnevlltDvvllytPsqiaLaailseasrlvl...klesrltealsvkenreelpqlidivrelkklkkkeeeerseev 266
                   f+L v +Py+ l   + + ++  l   +++  + k+a++f+n+ + t  +l + P  +a aai+++   + +   +   + +  ++++ + eel+++ + + e+  l +k+e+  + + 
  MMETSP1174-20130828|14953_1   2 AFDLCVKHPYKDLFEIVKNlCQKGLILDTQKRDFAKSALDFVNDSMRTSLCLQFEPQKVATAAIYMTTVYMRVkssENADQWM--KQLEISSEELSRICQQIMEVYGLANKHEQTAPSNH 119
                  69**********988877624555555555666889999***************************98877762221222333..44444477777777766666655555544433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 953.25
//
Query:       MMETSP1174-20130828|14951_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   44.1   0.0    1.7e-12   43.9   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.9e-06   23.7   0.0    9.4e-06   23.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0053   13.2   0.0     0.0075   12.7   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.2e-15   1.7e-12      34     187 ..       3     144 ..       1     169 [. 0.84

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 1.2e-15
    TIGR03903  34 rLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL.RgepvtaksDlYaWGLivleCLtGkr 187
                   L+hP iv+     + +  + + + eyv+G     +L + G L  ++     +qv   +   h++G ++RDLkP+n+++ +++     k+ DFG +     +e+a ++t      +  +P+Y aPe L   e      D ++ G+ v e L G++
  MMETSP1174-20130828|14951_1   3 SLHHPSIVKFAGTFV-DSRYHYLILEYVPGGEFYSILRNRGRLEEKDAKFYAAQVTLMFEYIHSQGFIYRDLKPENLLLDKNG---YLKLTDFGSAK---KIEKAVHQT------LCSTPEYIAPEVLlMKEHDGKGIDWWTLGIFVYEMLVGQP 144
                  69*******965443.3347899*******************************************************96665...67999**9643...344444444......5679*******862678888889***************96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   6.9e-09   9.4e-06      66     142 ..      16     100 ..       7     106 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6.9e-09
    TIGR03724  66 dvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskev 142
                  +vd +   +++ey+ g ++  +l+++          ++ +v  +   +H++g+++ Dl ++N+++ k++ l l DfG +kk +++
  MMETSP1174-20130828|14951_1  16 FVDSRYHYLILEYVPGGEFYSILRNRGRleekdakFYAAQVTLMFEYIHSQGFIYRDLKPENLLLdKNGYLKLTDFGSAKKIEKA 100
                  5778888999******999999998776778778678899*************************55777889****99876554 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.5e-06    0.0075     256     314 ..      48     105 ..      19     108 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.5e-06
    TIGR01982 256 dlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerryl 314
                  d k   ++ v+ +++ +  +gf   Dl p N+l++k+g + + DfG   ++++  ++ l
  MMETSP1174-20130828|14951_1  48 DAK-FYAAQVTLMFEYIHSQGFIYRDLKPENLLLDKNGYLKLTDFGSAKKIEKAVHQTL 105
                  333.3445677899********************************9999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 998.38
//
Query:       MMETSP1174-20130828|14956_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|14960_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 187.56
//
Query:       MMETSP1174-20130828|14961_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   14.2   0.1     0.0089   14.0   0.1    1.1  1  TIGR00347 bioD: dethiobiotin synthase


Domain annotation for each model (and alignments):
>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.2e-06    0.0089       7      71 ..       6      65 ..       4      87 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-06
    TIGR00347  7 TevGKtvvssalakklkkagysvallKpvqtgiektaeDaetlknlkateedldevtpyafkePl 71
                 T vGK+ +++    ++ + ++++ + Kpv t ie+++  +e + +++++++dl   +p  f+  l
  MMETSP1174-20130828|14961_1  6 TRVGKATTTT---TSWSSSNVNAPTSKPVVTQIEEHE--SENIASIDIVTNDLYSNQPTDFESDL 65
                 8899998887...5799999**************554..589***********999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.48
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|14962_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.085   10.5   0.2      0.085   10.5   0.1    2.1  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.15   6.1e+02       4       9 ..      18      23 ..      17      24 .. 0.66
   2 ?   10.5   0.1   2.1e-05     0.085       3      13 ..      32      42 ..      32      43 .. 0.89
   3 ?   -3.0   0.1      0.36   1.5e+03       5       9 ..      45      49 ..      44      50 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.15
    TIGR02167  4 gCssLt 9 
                 +C+ +t
  MMETSP1174-20130828|14962_1 18 DCKDVT 23
                 787765 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 2.1e-05
    TIGR02167  3 sgCssLtsLDl 13
                 ++Cs Lts+Dl
  MMETSP1174-20130828|14962_1 32 RSCSGLTSIDL 42
                 58********9 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.36
    TIGR02167  5 CssLt 9 
                 Cs +t
  MMETSP1174-20130828|14962_1 45 CSEIT 49
                 77665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1174-20130828|14958_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 1976.45
//
Query:       MMETSP1174-20130828|14964_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 447.30
//
Query:       MMETSP1174-20130828|14968_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 737.79
//
Query:       MMETSP1174-20130828|14966_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1467.59
//
Query:       MMETSP1174-20130828|14974_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1174-20130828|14973_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-07   27.6   0.0     0.0029   14.9   0.0    3.2  3  TIGR00068 glyox_I: lactoylglutathione lyase
  ------ inclusion threshold ------
      0.026   12.3   0.0      0.034   12.0   0.0    1.2  1  TIGR03725 bact_YeaZ: universal bacterial protein YeaZ


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00055       1.1      18      68 ..      36     102 ..      26     166 .. 0.71
   2 !    2.5   0.0    0.0091        19      20      44 ..     180     203 ..     170     212 .. 0.84
   3 !   14.9   0.0   1.4e-06    0.0029      81     146 ..     252     313 ..     227     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00055
    TIGR00068  18 llhtmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa..................a 68 
                    h+++  gd+d+ l+f    l m++l ++   +      f+g+++++ +                  +
  MMETSP1174-20130828|14973_1  36 TTHAVVNTGDMDAMLQFLLLGLNMEVLDTT--MDGTVNTTFVGFGPRQLTvppqfipgvssweeygghF 102
                  5799999***********999999999875..4556678899999987655555555555555555542 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0091
    TIGR00068  20 htmlrvgdldksldfytevlGmkll 44 
                   + l v+d++++  fyt+ lGm+ l
  MMETSP1174-20130828|14973_1 180 FAALNVKDIKAAEAFYTQ-LGMRRL 203
                  56689***********98.899765 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 1.4e-06
    TIGR00068  81 ydlGngfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGykiellekkktke 146
                   ++G+ fG +ai +ddv++  +++ ++ +  +   g   g  k i    DPDG+ iel+e ++ ++
  MMETSP1174-20130828|14973_1 252 IEVGSVFGGLAILTDDVQSGADQIIKRPSPPTS--GESAGPRKLIG--SDPDGFGIELIEYSDFSK 313
                  57899*****************99877765543..44566677776..8**********9987765 PP

>> TIGR03725  bact_YeaZ: universal bacterial protein YeaZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05     0.034      65      98 ..       9      42 ..       8     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.6e-05
    TIGR03725 65 GsFTGlRiGlatakgLalalgipvvgvssldala 98
                 G FT l +G  ta+gL+   +i v  v++++++ 
  MMETSP1174-20130828|14973_1  9 GAFTALQLGPQTARGLGTINDISVPRVTTHAVVN 42
                 99****************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.53
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|14978_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-93  310.8   5.7    2.5e-93  310.4   3.9    1.0  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
    8.5e-44  147.7   1.9    1.1e-43  147.4   1.3    1.1  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    3.6e-07   27.5   0.1      4e-07   27.4   0.1    1.1  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
      0.004   13.8   0.4      0.005   13.5   0.3    1.1  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.4   3.9   2.5e-96   2.5e-93      19     284 ..       7     286 ..       4     289 .. 0.93

  Alignments for each domain:
  == domain 1    score: 310.4 bits;  conditional E-value: 2.5e-96
    TIGR01692  19 ghavrvfdlsakaveelveaGaqaaasaaeaveeadvvitmlPagkhvesvyagdegilakvk.......kksllidsstidvdsarkvaeeaaakGa.......vfldaPvsGGvggaraGtltfmvGgeaeefaraepvleamgknivhaGdaGaGqaakiCnnlllgismiGvaealalgeklGldpkvlaeilskssGrcWsldtynPvPGvveqaPasngykgGfatalmlkdlglaqeaaksvkasvllGalarelyslfaskgagkkdfsavi 284
                  g +v++fd +++ +e +v+ Gaq a+s+ae       vitmlP+  hv +vy+g  g+++ ++          l++dsstid+ +ar+v+++++a+G+       ++l+aPvsGGvgga+aGtltfm+Gge ++++ a+p+l  mg+ni+h+G+aG+G +ak+Cnnlll++sm+G+aea+alg  lG+dp+vla++l++s+GrcWs++ ynP PGvv+++Pas gykgGfa +lm kdl la +a ++ + ++++G++a++ y+l +++g+g++dfs+++
  MMETSP1174-20130828|14978_1   7 GXEVTAFDTFSSSLEAAVKIGAQPASSVAELGGSCSSVITMLPSPDHVAEVYMGPGGLIEAARarleessDTILFVDSSTIDPATAREVHAAVKAAGKdlkgaemMMLEAPVSGGVGGAAAGTLTFMAGGESSALDLARPLLMKMGSNIIHCGGAGTGVGAKLCNNLLLAVSMAGTAEAMALGDSLGMDPNVLAQVLNTSTGRCWSSEVYNPRPGVVPTSPASDGYKGGFANSLMEKDLFLALQAGRANGVPLQFGSTAHAAYALLKAQGHGNLDFSSIF 286
                  7899**************************************************999987654222221145699*****************9998852222222578**************************************************************************************************************************************************************************97 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   1.3   1.1e-46   1.1e-43      22     279 ..       7     285 ..       4     290 .. 0.89

  Alignments for each domain:
  == domain 1    score: 147.4 bits;  conditional E-value: 1.1e-46
    TIGR01505  22 GyqlvvatleqealdellaaGaesaetakevvedadvivtmvPdsPqveevalGenGileaak.......kGkvlvdmssiaPleskelakavkekGid.......vldaPvsGGeagaiegtlsimvGGdkavfdkvkpllealgksivlvGenGaGqtvkvanqvivalnieavsealvlaekaGvdpkavlqalr...GGlagstvleakkerl....ldrdfkPGfridlhqkdlalaldaakavgaalPvtavvaellaalradGdgtldhsal 279
                  G ++++++  +  l+  + +Ga+ a++++e+  ++  ++tm+P+  +v ev +G+ G++eaa+       +  ++vd s+i P +++e+  avk+ G d       +l+aPvsGG  ga  gtl+ m GG+ + +d ++pll  +g +i+++G+ G+G  +k+ n +++a+ ++  +ea+ l +  G+dp+   q+l+   G   +s v + +   +        +k Gf   l +kdl lal+a +a g+ l  +++ +   a l+a+G+g+ld s++
  MMETSP1174-20130828|14978_1   7 GXEVTAFDTFSSSLEAAVKIGAQPASSVAELGGSCSSVITMLPSPDHVAEVYMGPGGLIEAARarleessDTILFVDSSTIDPATAREVHAAVKAAGKDlkgaemmMLEAPVSGGVGGAAAGTLTFMAGGESSALDLARPLLMKMGSNIIHCGGAGTGVGAKLCNNLLLAVSMAGTAEAMALGDSLGMDPNVLAQVLNtstGRCWSSEVYNPRPGVVptspASDGYKGGFANSLMEKDLFLALQAGRANGVPLQFGSTAHAAYALLKAQGHGNLDFSSI 285
                  77889999999999*********************************************99863333321345679******************98876444445579************************************************************************************9999974436677999999887665222245679**************************************************986 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   3.9e-10     4e-07     104     191 ..     103     188 ..       9     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 3.9e-10
    TIGR00872 104 ekelkekgihlldvGtsGGvlGkerGy.clmiGGdeeafkkaeplfkdvaveekGylylGeaGsGhfvkmvhnGieyGlmaalaeGlev 191
                   k+lk +++ +l++ +sGGv G+  G  ++m GG+  a + a pl+ ++  +    +++G aG+G  +k+  n +    ma  ae + +
  MMETSP1174-20130828|14978_1 103 GKDLKGAEMMMLEAPVSGGVGGAAAGTlTFMAGGESSALDLARPLLMKMGSNI---IHCGGAGTGVGAKLCNNLLLAVSMAGTAEAMAL 188
                  578999******************99548*****************9998765...*****************9999899999988765 PP

>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   4.9e-06     0.005     109     159 ..     103     154 ..      86     208 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.9e-06
    TIGR00873 109 ekelkekgilfvGvGvsGGeeGarkGP.slmpGGskeayelvepilqkiaak 159
                   k+lk ++++++ + vsGG  Ga  G  + m GG+++a +l +p+l k+ ++
  MMETSP1174-20130828|14978_1 103 GKDLKGAEMMMLEAPVSGGVGGAAAGTlTFMAGGESSALDLARPLLMKMGSN 154
                  58999999******************7589****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 755.70
//
Query:       MMETSP1174-20130828|14976_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   29.9   0.6    0.00047   17.3   0.0    2.4  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.4   1.3e-05     0.054     154     200 ..     610     656 ..     581     678 .. 0.69
   2 !   17.3   0.0   1.1e-07   0.00047     159     194 ..     677     712 ..     659     738 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.3e-05
    TIGR00601 154 GsereetveeimemGyereeverAlRAafnnPdRAveYLltGiPedl 200
                   +  e +v ++ +mG+  +   rA  Aa nn + A e++l+ + ++ 
  MMETSP1174-20130828|14976_1 610 LQADEAVVAQLASMGFGENACRRAAVAASNNFEAATEWVLAHMEDQN 656
                  355688999*****************************998765544 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.1e-07
    TIGR00601 159 etveeimemGyereeverAlRAafnnPdRAveYLlt 194
                  e+v  + +mG+  e+v+ Al+A+ n+ +RA ++L++
  MMETSP1174-20130828|14976_1 677 EIVMMLTSMGFSEEKVISALKATNNDSERAADWLFS 712
                  5677788**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.60
# Mc/sec: 1773.05
//
Query:       MMETSP1174-20130828|14977_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.60
# Mc/sec: 1473.88
//
Query:       MMETSP1174-20130828|14981_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 798.37
//
Query:       MMETSP1174-20130828|14983_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1388.53
//
Query:       MMETSP1174-20130828|14984_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|14989_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|14986_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1397.26
//
Query:       MMETSP1174-20130828|14990_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.4   0.1      0.032   11.5   0.0    1.4  1  TIGR04119 CXXX_matur: CXXX repeat peptide maturase


Domain annotation for each model (and alignments):
>> TIGR04119  CXXX_matur: CXXX repeat peptide maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-06     0.032      50      97 ..     212     262 ..     190     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.7e-06
    TIGR04119  50 Lkkivdliaelyk.kgeilelnvltDr..lllkkmenCdaGeksfalapng 97 
                  ++ ++d + +  + kg++l +n++ D+  + l km +C++G k++ la n+
  MMETSP1174-20130828|14990_1 212 ISALADALHHNSTlKGIQLAFNKVGDDgtISLAKMLCCNTGLKTLQLAGNE 262
                  56788899888888***********963378899**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1062.51
//
Query:       MMETSP1174-20130828|14991_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-09   33.7   0.0    1.9e-05   22.0   0.0    2.2  2  TIGR03729 acc_ester: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.7e-09   1.9e-05       1     141 [.     151     289 ..     151     297 .. 0.68
   2 !    9.7   0.0   2.7e-05      0.11     161     238 ..     329     399 ..     315     400 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.7e-09
    TIGR03729   1 kiavisDlHlDlnkvdeeeileklaevlkkkkidilliaGDisNdfkkslafieklqelkeikvtflaGNHdll......kdlt.eeelessdselylhnkfidikneetalignnGWYDYsfaeektekeilklkkaywiDrrikrp 141
                  k+ ++sDlH+D +k  +       +e l     ++l++aGDi   +kk  a +e l + +   v +++GNH+l+      ++++ + e+ +  +e  +h++   +    +a++    WY  s+  ++ + e   + ++  +Dr  ++p
  MMETSP1174-20130828|14991_1 151 KVLFTSDLHIDAPKNRQW------LEDLPYCPDETLIVAGDICTSLKKLRATFELLVA-RFQYVFYTPGNHELWtyagqgNSIDkFFEILDIADECGVHVRPAWV-SPGVAVVPLFSWYNSSLFGSSAAVELR-SSQEQNFDRMCSWP 289
                  67799******9986543......344555566789********************96.66679**********7655332222122444455566666665555.666788888888888876555555433.33334456666655 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 2.7e-05
    TIGR03729 161 elskkkvilvtHfvphkefievpadhrifdmlnAflGseklgkllekyeikavifGHlHrrkkplkignvlYlnralG 238
                  el++  v+  +Hf+p++e        + +  l  ++G ++l+  l++    + +fGH H++ +++  ++v Y++ alG
  MMETSP1174-20130828|14991_1 329 ELESATVLTFSHFIPRPELF------KGLPSLRKVMGDTELDVQLRMIGSCTHVFGHSHMAVDEIC-EEVRYVQGALG 399
                  56678899999*****9999......566677789*************999999******999987.9999**99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.27
# Mc/sec: 2072.72
//
Query:       MMETSP1174-20130828|14988_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1340.73
//
Query:       MMETSP1174-20130828|14997_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.72
# Mc/sec: 863.43
//
Query:       MMETSP1174-20130828|15001_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 246.38
//
Query:       MMETSP1174-20130828|15000_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.45
# Mc/sec: 1897.71
//
Query:       MMETSP1174-20130828|15008_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 749.13
//
Query:       MMETSP1174-20130828|15009_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1231.90
//
Query:       MMETSP1174-20130828|15011_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.0   5.6    2.1e-12   44.5   3.9    1.2  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   3.9   5.1e-16   2.1e-12     210     384 ..     107     284 ..      97     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 5.1e-16
    TIGR00797 210 wealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlft...kdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfll 384
                  w ++ ++l    ++++r +l++ ++ ++ + +a+l + +lAa+q++  +++++++l++Gla  ++   ++ +Ga++ +  +  + +   lgl++g v a +l + re +  ++    +   + +  +++++++   q+ +a+ fv dG l ++ +++++++v +  ++++  p+l ++
  MMETSP1174-20130828|15011_1 107 WFSMGKFLGDAGNTIVRSLLLQGSMWAMLVAAAHLSTDTLAAQQIVCLLWLIVSYLIDGLADLGTMYGARLIGAKQHSLFALLVARLRRLGLIFGAVAASVLWFRREWVQDMLLasdDTAGIRSELRRVWPLLCAIQLCNAMVFVYDGLLAATEQFAFVRNVFLSGVLLLFSPVLSIS 284
                  66677788888899*********************************************************************************************966555533266678999************************************99888888877877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|15005_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-45  152.3   0.0    5.7e-43  145.2   0.0    2.2  1  TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase
    3.5e-37  126.2   0.0    1.2e-34  117.9   0.0    2.3  2  TIGR00434 cysH: phosophoadenylyl-sulfate reductase
    1.2e-33  114.3   0.1    1.5e-33  113.9   0.1    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    2.5e-30  103.6   0.0    1.3e-29  101.3   0.0    1.9  2  TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent
      3e-13   47.8   0.0    7.3e-13   46.6   0.0    1.6  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.5e-12   45.5   0.1      5e-12   43.7   0.0    1.9  2  TIGR01068 thioredoxin: thioredoxin
    2.4e-11   41.6   0.0    4.8e-11   40.7   0.0    1.5  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    5.4e-05   20.8   0.0      0.011   13.1   0.0    2.2  2  TIGR02039 CysD: sulfate adenylyltransferase, small subunit
     0.0052   14.4   0.0     0.0092   13.6   0.0    1.4  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
      0.013   12.9   0.0      0.035   11.5   0.0    1.7  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.019   13.3   0.0      0.049   12.0   0.0    1.6  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR02057  PAPS_reductase: phosphoadenosine phosphosulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   1.5e-45   5.7e-43      27     215 ..      76     271 ..      52     304 .. 0.86

  Alignments for each domain:
  == domain 1    score: 145.2 bits;  conditional E-value: 1.5e-45
    TIGR02057  27 lvlssafgiqalvilhllskil....qeipvifiDtlylfpetlelvdelkeklkldlnlkkydaveseaafeakyGklleekdvekydqiakvePlqralkeLnavawltGrrrdqasaranlkvleld.ekrgvlkvlPlidWtskqvyeylaahkvkynplfDqGylsvGDehstrkvkegeder..agrfkG 215
                   v   a+   + vi+hll ++       ++++ +Dt +lfpet+e+++ l+++++ + ++ + +++  +aaf++kyG  l+++d+++yd++ kveP qr+lk L++ +++ Gr r q+ +ra ++++e   + +g  kv+Pl+ Wt+++ ++y+a+ +v+ +pl+  Gy+s+GD + t ++ e+   +  + +++G
  MMETSP1174-20130828|15005_1  76 PVFPNAMIAGDCVITHLLGELGylesGAVKIMVVDTFHLFPETMEFIQALEKRYNFKAEVFQAEGCVDKAAFDSKYGVDLWKEDIDQYDKVCKVEPFQRGLKTLETDCMINGRTRWQGFERAWIDLFENApIGGGLAKVNPLAYWTFEDTFDYIAKFEVPAHPLHAAGYPSLGDAKDTIPIPEDGSTKfvNFKWEG 271
                  455666667789*****998865555789**************************************************************************************************9542567889***************************************99999876665545556666 PP

>> TIGR00434  cysH: phosophoadenylyl-sulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   3.2e-37   1.2e-34      39     204 ..     103     271 ..      62     277 .. 0.87
   2 !    6.1   0.1    0.0053         2     193     213 ..     278     304 ..     272     305 .. 0.69

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 3.2e-37
    TIGR00434  39 dievilldtgylfketyelieevkerykglnikvykpd..lseaeqeakyGdkLWekedlnkydqlrkvePlkralkeleasawlsGlRrdqsssRanlkvveldek.fellkvlPlidWtfkdvyqYleahnlpYnelfDqgYlsiGdahstrpvkegeder..agRfkG 204
                   ++++++dt +lf+et+e+i+ +++ry+ ++ +v++++    +a +++kyG  LW++ d+++yd++ kveP +r lk le   ++ G+ r q+ +Ra +++ e      +l kv+Pl  Wtf+d ++Y+ + ++p ++l+  gY+s+Gda+ t p+ e    +  + +++G
  MMETSP1174-20130828|15005_1 103 AVKIMVVDTFHLFPETMEFIQALEKRYN-FKAEVFQAEgcVDKAAFDSKYGVDLWKE-DIDQYDKVCKVEPFQRGLKTLETDCMINGRTRWQGFERAWIDLFENAPIgGGLAKVNPLAYWTFEDTFDYIAKFEVPAHPLHAAGYPSLGDAKDTIPIPEDGSTKfvNFKWEG 271
                  57899**********************9.*********8788999***********9.6*****************************************999876514789*******************************************9987544411556666 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0053
    TIGR00434 193 egederagRfkG......kakteCGlh 213
                  +   er+gRf G       +kteCG+h
  MMETSP1174-20130828|15005_1 278 DYASERKGRFVGlankdgSTKTECGIH 304
                  56789999997622222267******* PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.1     4e-36   1.5e-33     132     459 ..      95     419 ..      66     423 .] 0.78

  Alignments for each domain:
  == domain 1    score: 113.9 bits;  conditional E-value: 4e-36
    TIGR00424 132 eyarltgrpfrvfsldtgrlnpetyrlfdavekqygirieymfpdavevqalvrskglfsfyedghqeccrvrkvrplrralkglka..witgqrkdqspgtrseipvvqvdpvfegldggvgslvkwnpvanvegkdvwnflrtmdvpvntlhaqgyvsigcepctravlpgqheregrwwwedakak...ecglhkgnikensledg........avngeskaavadifesnnvvalsrqgienllkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrssraikypsekrdvdslmsf 459
                  e   l     +++ +dt  l pet  +++a+ek+y  + e +  +    +a   sk    ++++  ++  +v kv p++r lk l++   i g+ + q    r+ i + +  p+        g l k np+a    +d ++++  ++vp   lha+gy s+g    t ++      +   + we  k+         kg     +++dg        +v+g  k+   d++    v  ls++g    + ++   ++ ++v+yapwc+fcq me  + +l++ l   g  v k+r d d ++f   e+ ++sfpti ++  +s + iky se+rd  s+  f
  MMETSP1174-20130828|15005_1  95 ELGYLESGAVKIMVVDTFHLFPETMEFIQALEKRYNFKAEVFQAEGCVDKAAFDSKYGVDLWKEDIDQYDKVCKVEPFQRGLKTLETdcMINGRTRWQG-FERAWIDLFENAPIG-------GGLAKVNPLAYWTFEDTFDYIAKFEVPAHPLHAAGYPSLGDAKDTIPIPEDGSTKFVNFKWEGDKTAwldYASERKGRFVGLANKDGstktecgiHVEGAEKTFDRDLWIDGGVKELSKEGA---MDIKSSDKPTVMVVYAPWCQFCQGMEDEFEKLSSELD--GFEVVKYRGDED-RDFVAAEFGVESFPTISVI--KSGKVIKYDSEERDAASMKEF 419
                  5556666778999***************************9988877667777777666666666666889**************86326777776665.468889887777763.......5689************************************9999999877666666667777555431113344555554444444400000001455555555566666667777777764...6778889999*************************96..5789*****976.68999***********997..799**************9988 PP

>> TIGR02055  APS_reductase: adenylylsulfate reductase, thioredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   3.4e-32   1.3e-29       6     185 ..      86     270 ..      81     276 .. 0.85
   2 ?   -0.0   0.0      0.38   1.4e+02     175     194 .]     280     303 ..     274     303 .. 0.70

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 3.4e-32
    TIGR02055   6 dlvlvdliak....vkkevevlfldtGrlfketlelidqveerYdieikvlapde.keveeqvkeyGlnlfyrs.elrkeCCelRkvePLkraLegv..saWitGlRReqsptRakvallelDearkslvkvnPladwtleevweyikknelpvnpLherGYpsiGCepCtrpvkegedeRaGRWwwe 185
                  d v+++l+ +     +  v+++++dt +lf et+e+i+++e+rY+ + +v++ +   + ++ +++yG++l++++ +  +   ++ kveP +r L+    +  i G  R q++ Ra + l e     ++l+kvnPla wt e++ +yi+k+e+p +pLh+ GYps+G +  t p+ e   ++   ++we
  MMETSP1174-20130828|15005_1  86 DCVITHLLGElgylESGAVKIMVVDTFHLFPETMEFIQALEKRYNFKAEVFQAEGcVDKAAFDSKYGVDLWKEDiDQYD---KVCKVEPFQRGLKTLetDCMINGRTRWQGFERAWIDLFENAPIGGGLAKVNPLAYWTFEDTFDYIAKFEVPAHPLHAAGYPSLGDAKDTIPIPEDGSTKFVNFKWE 270
                  5666666554111145689**************************999999887525677899**********955555...55599*******97511679**********************************************************************9999888877777776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.38
    TIGR02055 175 edeRaGRWwwee....aakkeCGL 194
                  + eR+GR+ +      ++k+eCG+
  MMETSP1174-20130828|15005_1 280 ASERKGRFVGLAnkdgSTKTECGI 303
                  67999**9986412225799**95 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0     2e-15   7.3e-13      10     102 ..     333     421 ..     326     423 .] 0.85

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 2e-15
    TIGR01126  10 vldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataeke.laskfkvsgfPtlkffkkgkkepvdyeG.eReaeelvefve 102
                  +++++k +++  yaPWC  C+ ++ e+ekl++el+      ++ k   +++++ +a++f+v++fPt+ ++k+gk   ++y+  eR+a+++ ef  
  MMETSP1174-20130828|15005_1 333 IKSSDKPTVMVVYAPWCQFCQGMEDEFEKLSSELDG----FEVVKYRGDEDRDfVAAEFGVESFPTISVIKSGK--VIKYDSeERDAASMKEFAM 421
                  566778888889**********************97....56888888887552688*****************..6999875899**9999975 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.4     2e+03      37      60 ..     143     166 ..     140     169 .. 0.74
   2 !   43.7   0.0   1.4e-14     5e-12       8      85 ..     331     408 ..     325     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 5.4
    TIGR01068  37 eelakeleekvkvvKlnvdeeqei 60 
                  +++a + +  v++ K ++d+ +++
  MMETSP1174-20130828|15005_1 143 DKAAFDSKYGVDLWKEDIDQYDKV 166
                  666667777889999999988776 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 1.4e-14
    TIGR01068   8 etvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe.iaakygirsiPtlllfkngkevkrvv 85 
                   +++ssdk+ ++  +A+WC  C+ +   +e+l++el +  +vvK   de+++ +aa++g++s Pt+ ++k+gk++k   
  MMETSP1174-20130828|15005_1 331 MDIKSSDKPTVMVVYAPWCQFCQGMEDEFEKLSSELDG-FEVVKYRGDEDRDfVAAEFGVESFPTISVIKSGKVIKYDS 408
                  5789999**999*********************99986.9********99985799*****************988665 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.9   1.4e+03     338     365 ..      25      52 ..      13      58 .. 0.77
   2 !   40.7   0.0   1.3e-13   4.8e-11     362     448 ..     336     420 ..     320     423 .] 0.88

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.9
    TIGR01130 338 piped.deepVkvvVgknfdeivldetKd 365
                  ++p +   +p k+v g+n  ++v +++ d
  MMETSP1174-20130828|15005_1  25 SVPRQvRASPTKMVFGDNLGSLVQESK-D 52 
                  688888899999999999999996554.4 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 1.3e-13
    TIGR01130 362 etKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpe.fevegFPTilfvpagkksepvkyeg.dRtledlvkFi 448
                  ++K + + +YApWC  C+ ++  +e+l++++    +vv  + d     v + f ve+FPTi  +++gk    +ky++ +R+  ++++F 
  MMETSP1174-20130828|15005_1 336 SDKPTVMVVYAPWCQFCQGMEDEFEKLSSELDGF-EVVKYRGDEDRDFVAAeFGVESFPTISVIKSGKV---IKYDSeERDAASMKEFA 420
                  567778889***********************95.59999999999999989*************9987...9**9978******9995 PP

>> TIGR02039  CysD: sulfate adenylyltransferase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.1e-05     0.011      10     131 ..      64     192 ..      55     203 .. 0.82
   2 !    5.7   0.0    0.0056       2.1     170     203 ..     209     242 ..     197     263 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
    TIGR02039  10 hilrevaaeferPvllysiGkdssvllhlarkafyPgklPfpllhvdtgwkfreviafrdelvakldlelivhsnee.......giaeginpltegsakstdilktealkqaldknqfdaalgGarrde 131
                    l+  + ++++Pv+  ++     v+ hl     y       ++ vdt + f e ++f  +l ++++ +  v + e        + + g++  +e ++++ ++ k e++++ l+  + d  + G  r +
  MMETSP1174-20130828|15005_1  64 WALKTAVESYKNPVFPNAMIAGDCVITHLLGELGYLESGAVKIMVVDTFHLFPETMEFIQALEKRYNFKAEVFQAEGcvdkaafDSKYGVDLWKEDIDQYDKVCKVEPFQRGLKTLETDCMINGRTRWQ 192
                  55677778899999999988888999999999999999999**************************998887665411111114556899999****************************9987755 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0056
    TIGR02039 170 GesvrvfPlsnwteldiwryiaaenieivplyfa 203
                  G   +v Pl+ wt  d ++yia+ +++  pl+ a
  MMETSP1174-20130828|15005_1 209 GGLAKVNPLAYWTFEDTFDYIAKFEVPAHPLHAA 242
                  5567899********************9999866 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.5e-05    0.0092      33      87 ..     348     401 ..     322     408 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
    TIGR02187  33 kCeyCeetkqlleelsevsdklkleiydldteedke.kvekykvervPtvileeeg 87 
                   C+ C+ ++   e+ls+  d +++  ++   +ed++ ++ +++ve  Pt+ + ++g
  MMETSP1174-20130828|15005_1 348 WCQFCQGMEDEFEKLSSELDGFEV--VKYRGDEDRDfVAAEFGVESFPTISVIKSG 401
                  599999999999999888887665..555555777725679**********99988 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.5e-05     0.035      58     104 ..     332     378 ..     321     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.5e-05
    TIGR00385  58 evlkkgklvLlnvwasWCptCraehplLkelake..glrivgvdykDes 104
                  ++    k++++ v+a WC+ C+   +  ++l+ e  g ++  v y+ ++
  MMETSP1174-20130828|15005_1 332 DIKSSDKPTVMVVYAPWCQFCQGMEDEFEKLSSEldGFEV--VKYRGDE 378
                  56677899**************999999999987113333..4566555 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013     0.049       3      68 ..     342     410 ..     340     414 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00013
    TIGR02196   3 kvYttpwCppCkkakeyLkskgiafeeidvek..dsaaaeellkklgqrsvPviv.ig.ekivvGFdkek 68 
                   v   pwC+ C+ +++ +++   + + ++v k  + ++++ +  + g  s P+i  i+ +k++  +d e+
  MMETSP1174-20130828|15005_1 342 MVVYAPWCQFCQGMEDEFEKLSSELDGFEVVKyrGDEDRDFVAAEFGVESFPTISvIKsGKVI-KYDSEE 410
                  555579***********************987446789999************9746667754.677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.55
# Mc/sec: 1015.12
//
Query:       MMETSP1174-20130828|15012_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1075.23
//
Query:       MMETSP1174-20130828|15015_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 612.43
//
Query:       MMETSP1174-20130828|15014_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   13.7   1.2     0.0098   13.1   0.8    1.2  1  TIGR03732 lanti_perm_MutE: lantibiotic protection ABC transporter permease subunit, MutE/EpiE family
  ------ inclusion threshold ------
      0.014   11.8   2.5      0.019   11.4   1.7    1.1  1  TIGR00910 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter


Domain annotation for each model (and alignments):
>> TIGR03732  lanti_perm_MutE: lantibiotic protection ABC transporter permease subunit, MutE/EpiE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.8   4.8e-06    0.0098      59     149 ..      46     141 ..      35     146 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.8e-06
    TIGR03732  59 callakkekkksnyrailslpvdlkkvwiakilvi...alyllisslilli.ilvlvelvlk.aslisilqlllaslllivtslwqiPlclflakk 149
                   + l   ek +++y+  + +++dl+  ++    +    ++++++s + +++ ++ l+ l+l  +s+i     +  +l+ ++   + iPl++fla +
  MMETSP1174-20130828|15014_1  46 VMYLIFYEKYHEDYNFHRNHDADLNCPYMFPTWMYvtgIVCVSVSGIGFVLsVMALTALMLGeESSIGKCLQVWVMLIGVIFACAIIPLIFFLAGW 141
                  45566778888999999999999986544332222011445566665444414455555555578888888888899999999**********965 PP

>> TIGR00910  2A0307_GadC: glutamate:gamma-aminobutyrate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7   9.4e-06     0.019     375     464 ..      45     137 ..      33     140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.4e-06
    TIGR00910 375 vviylvaylllfivyivlvlkkqdlkrtynvpgkkivklv....vaivglllsilalivsflppdsiakdetdtyvelllvsflvvlilpfily 464
                   v+yl+ y  +   y     +  dl+  y  p  + v  +    v+++g++ls++al   +l  +s  ++  +++v+l+ v f   +i+p+i++
  MMETSP1174-20130828|15014_1  45 SVMYLIFYEKYHEDYNFHRNHDADLNCPYMFPTWMYVTGIvcvsVSGIGFVLSVMALTALMLGEESSIGKCLQVWVMLIGVIFA-CAIIPLIFF 137
                  36777777777777777777888999999999876555441112689******************************9999886.567788865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 685.22
//
Query:       MMETSP1174-20130828|15016_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|15017_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.5   0.0      5e-09   34.1   0.0    1.7  1  TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain
    0.00018   19.9   0.1    0.00076   17.9   0.0    2.1  2  TIGR00058 Hemerythrin: hemerythrin family non-heme iron proteins


Domain annotation for each model (and alignments):
>> TIGR02481  hemeryth_dom: hemerythrin-like metal-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   2.4e-12     5e-09       7      93 ..     214     309 ..     209     335 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 2.4e-12
    TIGR02481   7 svgieeiDaqHkeLvelinellealkageg.keelkevlkeLkeyvekHFkeEEklmeevg........ypeleeHkkeHeklvkkveelqeavae 93 
                  svg++ +D++H+   ++i++l ++++ + g    +  +l+++ + +++HF+eEE+lm ++g        ++ +  Hkk H+++++++  lq+++++
  MMETSP1174-20130828|15017_1 214 SVGVASMDKEHEMCWAAIEKLRKEASGEGGgGGGVLAALEAVRAEMAEHFAEEEQLMIASGfggnpetsFSAVTGHKKDHQRILREIVGLQDSLSA 309
                  69********************977655557999***********************998866655555677899****************99876 PP

>> TIGR00058  Hemerythrin: hemerythrin family non-heme iron proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.7e-07   0.00076      15      86 ..     217     305 ..     208     312 .. 0.72
   2 ?   -3.6   0.0       1.7   3.4e+03     101     115 .]     343     357 ..     339     357 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.7e-07
    TIGR00058  15 ydeldeehkklfnaifalaeses.a........dalkelidvvtkhfkdeealmeka........kysevkehkkahedflaklkglka 86 
                    ++d+eh   ++ai +l ++ s           al+++++ +++hf++ee+lm ++        ++s v+ hkk h+  l ++ gl+ 
  MMETSP1174-20130828|15017_1 217 VASMDKEHEMCWAAIEKLRKEASgEggggggvlAALEAVRAEMAEHFAEEEQLMIASgfggnpetSFSAVTGHKKDHQRILREIVGLQD 305
                  5678889999898888887765422111221115788889999***********987223322225678899************99986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.7
    TIGR00058 101 vnhikttDfkykGkl 115
                  + h++  D  y Gkl
  MMETSP1174-20130828|15017_1 343 TTHVRLFDKLYDGKL 357
                  578888999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1191.12
//
Query:       MMETSP1174-20130828|15013_1  [L=1247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.14s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 2083.42
//
Query:       MMETSP1174-20130828|15020_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1174-20130828|15021_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   17.2   6.2     0.0019   15.1   0.4    2.2  2  TIGR03520 GldE: gliding motility-associated protein GldE


Domain annotation for each model (and alignments):
>> TIGR03520  GldE: gliding motility-associated protein GldE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.7   0.00045       1.8     123     188 ..      92     157 ..      85     166 .. 0.73
   2 !   15.1   0.4   4.7e-07    0.0019     147     214 ..     163     231 ..     158     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00045
    TIGR03520 123 klisildkllsplslvlravtllie.kklgkkksnlsvdelsqaleltdeedttkeekkilkGivsf 188
                    ++ l++ l+ l++  +++ + +e k++++k++ l +++l+  l  t++e++  + +++l+ +v++
  MMETSP1174-20130828|15021_1  92 LDVQSLKSELARLTMKTQELETSVEqKEVNEKQHLLRISKLESRLSATERESKLPD-EELLRKVVDL 157
                  55666777777888888877666651679999999**************9966655.5688888876 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4.7e-07
    TIGR03520 147 ekklgkkksnlsvdelsqaleltdeedttkeekkilkGivsfGnt..dtkqvmksrldifaldeeesfke 214
                   +k +k+++ l ++el+  l  t+ +  ++ e+++l+ i  f n+    k+++k+++++ +l+eee+++ 
  MMETSP1174-20130828|15021_1 163 AHKTSKQQHLLRISELESDLSATQAA-GSSREEELLRKITYFENEiaSQKELLKQKTEVSSLKEEEEYHA 231
                  567899*****************977.6667789*********97325689****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.74
# Mc/sec: 522.61
//
Query:       MMETSP1174-20130828|15018_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1677.73
//
Query:       MMETSP1174-20130828|15023_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   15.4   0.1        0.1    8.4   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.059   11.4   1.0        3.6    5.7   0.1    2.6  2  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   4.9e-05       0.1     129     158 ..      35      64 ..      10      68 .. 0.85
   2 !    5.5   0.0   0.00039       0.8     129     161 ..      68     100 ..      64     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 4.9e-05
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve 158
                    g t++ +A+h+  +  +k+L e ga+v+
  MMETSP1174-20130828|15023_1  35 KDGATPMYIAAHQGHVDAIKALAELGADVN 64 
                  4689************************97 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00039
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasveara 161
                   +g t++ +A+h+  +  +kl  + ga+ +  +
  MMETSP1174-20130828|15023_1  68 KNGATPVLIAAHQGHMDAIKLVYKLGADMKPDC 100
                  6899*******************9999988555 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0018       3.6      12      26 ..      46      60 ..      42      63 .. 0.90
   2 ?    3.6   0.1    0.0083        17      12      25 ..      79      92 ..      77      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0018
    TIGR00125 12 HlGHlklleeakelf 26
                 H+GH+++++  +el+
  MMETSP1174-20130828|15023_1 46 HQGHVDAIKALAELG 60
                 ********9999886 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0083
    TIGR00125 12 HlGHlklleeakel 25
                 H+GH+++++ + +l
  MMETSP1174-20130828|15023_1 79 HQGHMDAIKLVYKL 92
                 ********977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 546.81
//
Query:       MMETSP1174-20130828|15026_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|15027_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 231.98
//
Query:       MMETSP1174-20130828|15028_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 682.48
//
Query:       MMETSP1174-20130828|15031_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.61
# Mc/sec: 644.80
//
Query:       MMETSP1174-20130828|15034_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   74.4   1.2    2.1e-21   74.1   0.1    1.6  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    3.9e-19   66.8   0.1    5.9e-19   66.2   0.1    1.2  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    1.8e-16   58.5   0.0    2.6e-16   57.9   0.0    1.2  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    3.7e-05   19.5   0.0    6.5e-05   18.6   0.0    1.4  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    0.00046   16.6   0.2    0.00057   16.2   0.1    1.1  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
     0.0075   13.4   1.5      0.011   12.9   0.2    1.9  2  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.025   11.6   0.0    1.2  1  TIGR00417 speE: spermidine synthase
      0.027   11.6   0.8      0.051   10.6   0.2    1.7  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
      0.033   10.8   0.1      0.044   10.4   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.1   4.7e-24   2.1e-21      17     142 ..       4     138 ..       2     165 .. 0.90
   2 ?   -1.9   0.1      0.84   3.8e+02     177     201 ..     213     238 ..     192     240 .. 0.63

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 4.7e-24
    TIGR02356  17 qklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleeli.........eqvdlvlDctDnfktrylindaceaagkPlisa 142
                   +l++s+v ++G+Gg+g   ae l++ Gvg i +vD+Dev +sN +rq+    + v++pK+ea+a rl+ +n++ +++ ++  + +en +e +         + +d+v+D+ D  + +  +  ac a g Pl++ 
  MMETSP1174-20130828|15034_1   4 SRLMASRVCVVGIGGVGGWTAEALVRSGVGSISLVDMDEVCISNANRQVHALPGTVGLPKSEALACRLSLINQHCEIHQIRDFLSKENAHEILsgeasgiggMGYDVVVDAIDGAREKCDLLLACRAIGVPLVVV 138
                  59**************************************************************************************999873333333334689**************************974 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.84
    TIGR02356 177 sCaea.GvigpvvgvigslqaleAlk 201
                   C+ a G   +v+g+ g   a++A+ 
  MMETSP1174-20130828|15034_1 213 GCDAAfGTSCAVTGTFGFAAAAAAID 238
                  35544377778888888888888876 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   1.3e-21   5.9e-19      21     144 ..       5     137 ..       2     146 .. 0.91

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.3e-21
    TIGR02355  21 klkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaaliak.........hdvvvdctdnvevrnqlnrqcfaakvplvs 144
                  +l as+v +vG+GG+G  +++ l  +GvG + lvd+d+v +sn +rqv     ++g pk e+ + +l+ +n h ei+ i + l++e+ +++++          +dvvvd+ d    + +l   c a  vplv 
  MMETSP1174-20130828|15034_1   5 RLMASRVCVVGIGGVGGWTAEALVRSGVGSISLVDMDEVCISNANRQVHALPGTVGLPKSEALACRLSLINQHCEIHQIRDFLSKENAHEILSGeasgiggmgYDVVVDAIDGAREKCDLLLACRAIGVPLVV 137
                  7899***********************************************************************************999986322333333389*************************985 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   5.7e-19   2.6e-16      18     158 ..       5     153 ..       2     168 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 5.7e-19
    TIGR02354  18 klkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykv.sdvGkkktealkeqiseinPyveieiidekideenleklfkd.a........divieafdnaeakallvnavlekykdkkliaasGlaGyedansiktr 158
                  +l  ++v ++G+GG+G   a +l r+G+g + lvd d v +sn nrq + +   vG +k+eal  ++s in + ei+ i   +++en ++++   a        d+v++a d a  k+ l  a         l++  G  G  d   ++  
  MMETSP1174-20130828|15034_1   5 RLMASRVCVVGIGGVGGWTAEALVRSGVGSISLVDMDEVCISNANRQVHALpGTVGLPKSEALACRLSLINQHCEIHQIRDFLSKENAHEILSGeAsgiggmgyDVVVDAIDGAREKCDLLLACRAI--GVPLVVVGGAGGKTDPTKVRCA 153
                  67889*******************************************998358***********************************99963212233334499******999998666554433..3445555666666666666655 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-07   6.5e-05     421     557 ..      10     146 ..       2     161 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-07
    TIGR01408 421 kvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpe.tetifddefy....eklsvvvnaldnvearlyvdsrclffekPllesGtlGtkgn 557
                  +v +vG G +G      l          G i++ d+d +  sn nrq    p  +g +kse+ a   + in + +i+  ++ ++ e + +i   e         +vvv+a+d    +  +   c +   Pl+  G  G k++
  MMETSP1174-20130828|15034_1  10 RVCVVGIGGVGGWTAEALVRS-----GVGSISLVDMDEVCISNANRQVHALPGTVGLPKSEALACRLSLINQHCEIHQIRDFLSKEnAHEILSGEASgiggMGYDVVVDAIDGAREKCDLLLACRAIGVPLVVVGGAGGKTD 146
                  556666666665444433333.....34789999999999999999999999999999999999999999999998888777766523456655543122235677888887766666666677777777777777777765 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.3e-06   0.00057     331     381 ..       2      52 ..       1      74 [. 0.94

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-06
    TIGR01381 331 dlevlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqs 381
                  +l +l  ++v ++G G +G   a +l+  Gv  i++vd  +v++sn  rq 
  MMETSP1174-20130828|15034_1   2 NLSRLMASRVCVVGIGGVGGWTAEALVRSGVGSISLVDMDEVCISNANRQV 52 
                  7899999******************************************95 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   2.5e-05     0.011      13      86 ..      10      74 ..       3     122 .. 0.80
   2 ?   -2.7   0.0       1.4   6.2e+02       9      25 ..     128     144 ..     119     151 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-05
    TIGR03736 13 kvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqafa.padvGankaivlvqRvnql 86
                 +v +vG+GG G    e+L+r        G     +++ +D D+v  +n  Rq +a p  vG  k+++l  R+  +
  MMETSP1174-20130828|15034_1 10 RVCVVGIGGVGGWTAEALVR-------SGVG---SISLVDMDEVCISNANRQVHAlPGTVGLPKSEALACRLSLI 74
                 78999999999988877665.......5555...7899**************985499********999998654 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
    TIGR03736   9 skkvkvvlvGaGGtGsq 25 
                   +++ v lv +GG G +
  MMETSP1174-20130828|15034_1 128 CRAIGVPLVVVGGAGGK 144
                  57788888888888865 PP

>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05     0.025      73     119 ..       8      55 ..       3      69 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-05
    TIGR00417  73 pkkvlviG.GGDGgvlrevvkhksveeitlveiDekvielskkylpkl 119
                  + +v v+G GG Gg   e +  + v +i lv++De  i+ + + +  l
  MMETSP1174-20130828|15034_1   8 ASRVCVVGiGGVGGWTAEALVRSGVGSISLVDMDEVCISNANRQVHAL 55 
                  67999**98999*************************99887766655 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00011     0.051     152     182 ..       9      39 ..       2      52 .. 0.87
   2 ?   -2.7   0.0       1.4   6.5e+02     151     161 ..     130     140 ..     119     164 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
    TIGR00693 152 leipvvaIGGitlenveevlkagvdgvavvs 182
                  +++ vv+IGG+   ++e++++ gv ++++v 
  MMETSP1174-20130828|15034_1   9 SRVCVVGIGGVGGWTAEALVRSGVGSISLVD 39 
                  35789***********************995 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
    TIGR00693 151 aleipvvaIGG 161
                  a+ +p v +GG
  MMETSP1174-20130828|15034_1 130 AIGVPLVVVGG 140
                  33456666666 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.6e-05     0.044       2      45 ..      10      54 ..       9      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.6e-05
    TIGR03026  2 kiavvGlGYvGlplaallaekgh.eVvgvDidkekveklnkgksp 45
                 +++vvG+G vG  +a +l + g+ ++ +vD+d+  +++ n++   
  MMETSP1174-20130828|15034_1 10 RVCVVGIGGVGGWTAEALVRSGVgSISLVDMDEVCISNANRQVHA 54
                 89********************857889********999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 708.72
//
Query:       MMETSP1174-20130828|15035_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036    9.9   0.1      0.042    9.7   0.1    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1     1e-05     0.042     593     636 ..      15      57 ..       9      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1e-05
    TIGR02441 593 lkelvkkGflGrksGkGifiydegkkgskkvnsdadeilkklkl 636
                  + +  kkGf       G++iy++ +k + +++++ d+il+  k+
  MMETSP1174-20130828|15035_1  15 MAKGAKKGFETGAEDDGFYIYSGVVK-NMTMDEGSDNILQARKV 57 
                  555678999999999***********.99**********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|15036_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.7   0.0      0.032   11.5   0.0    1.1  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.9e-06     0.032      65     111 ..      34      83 ..      14      99 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.9e-06
    TIGR01840  65 etehrargtgeveslkqlidavka.....nysIDpnrvyvtGLSaGggetaV 111
                  + ++ +r+  + +sl+++i +v +     + ++Dp  ++  G  aG g+++ 
  MMETSP1174-20130828|15036_1  34 KSSDGKRSFQHLVSLRDMITNVDKliayeDEEVDPCSIF--GVTAGPGMVSA 83 
                  567889999*************9999888889***9988..*****999863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.67
# Mc/sec: 226.55
//
Query:       MMETSP1174-20130828|15038_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 962.05
//
Query:       MMETSP1174-20130828|15040_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|15045_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.6   0.1      0.017   12.3   0.0    1.2  1  TIGR03729 acc_ester: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-06     0.017     191     223 ..      42      74 ..      25      92 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.3e-06
    TIGR03729 191 mlnAflGseklgkllekyeikavifGHlHrrkk 223
                   + A+   ++l+ ++ +y+++av++GH+H  ++
  MMETSP1174-20130828|15045_1  42 EFQAVSMQAALEPVFLNYRVNAVFTGHVHAYER 74 
                  566666678899*****************7543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 782.16
//
Query:       MMETSP1174-20130828|15044_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|15052_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.54
# Mc/sec: 1082.80
//
Query:       MMETSP1174-20130828|15055_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   19.9   0.2    3.9e-05   19.7   0.1    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
    0.00011   19.6   0.1    0.00015   19.1   0.1    1.2  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00054   17.7   0.1    0.00086   17.1   0.0    1.4  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
    0.00071   16.9   0.6     0.0019   15.5   0.4    1.7  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
      0.023   12.8   0.1      0.057   11.5   0.0    1.7  1  TIGR02689 ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type


Domain annotation for each model (and alignments):
>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   4.8e-08   3.9e-05      34      71 ..     101     138 ..      77     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4.8e-08
    TIGR03311  34 GcaeGacGactvlvnGkavkaclftveklaGkevttve 71 
                   c +G cG+c vlvnGk v++c +++  ++  e  tv+
  MMETSP1174-20130828|15055_1 101 KCMKGECGTCDVLVNGKWVHTCQTKIPAVSKGEAFTVN 138
                  6************************9999888877774 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.9e-07   0.00015      27      81 ..      82     134 ..      71     144 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.9e-07
    TIGR00384  27 svLdaLeqikkeqdaslafRksCReaiCGscavkvngkpkLACktkvedleqllk 81 
                  +v + L+++  + da ++++  C ++ CG c v vngk +  C+tk+ + ++  +
  MMETSP1174-20130828|15055_1  82 NVGQPLSEVAIQADAFIQYK--CMKGECGTCDVLVNGKWVHTCQTKIPAVSKGEA 134
                  56666777787888888885..*************************98766544 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06   0.00086      36      73 ..     100     137 ..      91     172 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
    TIGR03193  36 qgcdggecgactvlvdgeprlacltlavrvegkkvetv 73 
                    c  gecg+c vlv+g+ + +c t    v+  +  tv
  MMETSP1174-20130828|15055_1 100 YKCMKGECGTCDVLVNGKWVHTCQTKIPAVSKGEAFTV 137
                  57999******************998777766555555 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   2.3e-06    0.0019      38      65 ..     100     127 ..      86     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-06
    TIGR03198  38 vscgigrcgacavlvdgkvanacllmay 65 
                    c  g cg+c vlv+gk + +c +   
  MMETSP1174-20130828|15055_1 100 YKCMKGECGTCDVLVNGKWVHTCQTKIP 127
                  57999******************87654 PP

>> TIGR02689  ars_reduc_gluta: arsenate reductase, glutathione/glutaredoxin type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.9e-05     0.057      19      62 ..       3      46 ..       1      55 [. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.9e-05
    TIGR02689 19 gfakilgagkiavtsagleasrvdptaievmeevgidisgqisk 62
                  fa+++   ++av+  gl++ +  p  i  m e+ +d s+q+ k
  MMETSP1174-20130828|15055_1  3 AFARVFALCTVAVVVDGLASQKFMPKMIFGMGEAKVDSSKQVFK 46
                 699**************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 720.86
//
Query:       MMETSP1174-20130828|15056_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1174-20130828|15062_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   13.7   0.2     0.0063   13.5   0.1    1.0  1  TIGR01709 typeII_sec_gspL: general secretion pathway protein L


Domain annotation for each model (and alignments):
>> TIGR01709  typeII_sec_gspL: general secretion pathway protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.5e-06    0.0063     292     351 ..       4      63 ..       2      67 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-06
    TIGR01709 292 nprtqqkdelrrlaaelsgndflsllsglatalgqlpelqlqsldfdgarlelrlkleak 351
                  + r++ ++++r ++ ++++ +++sl+++la++ ++  ++++++l+ + + ++++ ++e k
  MMETSP1174-20130828|15062_1   4 DRRAEIESRIRVAQHAGASAEVTSLMRQLASVDQDIDGIEMNALNSSASSQSITKEGEKK 63 
                  678999***************************************999999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|15066_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.5   0.4      0.024   12.5   0.3    2.6  3  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.13   5.2e+02      26      43 ..      48      65 ..      48      69 .. 0.85
   2 ?   -2.3   0.4      0.24     1e+03       6      20 ..     140     154 ..     132     159 .. 0.70
   3 ?   12.5   0.3   5.8e-06     0.024       7      32 ..     241     266 ..     238     268 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.13
    TIGR00012 26 fqkatgqlekphrIrqvR 43
                 f+  tg l++ + +++++
  MMETSP1174-20130828|15066_1 48 FKETTGVLKNCGDFKNIK 65
                 677899999*******98 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.24
    TIGR00012   6 skeELakklkelKke 20 
                  ++ EL+k l ++++e
  MMETSP1174-20130828|15066_1 140 ENVELNKRLLSQEAE 154
                  456777777666665 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 5.8e-06
    TIGR00012   7 keELakklkelKkeLfeLRfqkatgq 32 
                  k+EL+++l+++++e ++L+ q++tg 
  MMETSP1174-20130828|15066_1 241 KDELEDELHQKEEEILSLKRQRVTGP 266
                  89*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|15069_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.2   0.2      0.016   12.9   0.1    1.1  1  TIGR03660 T1SS_rpt_143: T1SS-143 repeat domain


Domain annotation for each model (and alignments):
>> TIGR03660  T1SS_rpt_143: T1SS-143 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     4e-06     0.016      82     136 ..      20      77 ..      11      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4e-06
    TIGR03660  82 sdeltlnlpivatDfDgDtssatlpvtivDdkPtitdvel...ltvdeddlaegsdds 136
                  +d+l +++ +  +D+D  +s+    + i D+kP ++ +++   +++d +++++ + +s
  MMETSP1174-20130828|15069_1  20 EDNLGIKFLLDYQDSDTKESKDFTKISIIDEKPGAKPSSNfqaISMDVEEIEQSKLSS 77 
                  79999*****************************987766544666666666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1174-20130828|15067_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-122  407.5   0.1   3.4e-122  406.7   0.1    1.3  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.9e-48  162.5   0.1    3.5e-23   80.2   0.0    3.9  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.6e-46  155.8   0.2    1.7e-13   48.3   0.0    4.1  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-44  150.2   2.5    4.3e-20   69.6   0.0    4.8  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    9.1e-44  147.2   0.0    1.3e-18   65.1   0.0    4.3  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.5e-43  145.0   0.1    5.2e-11   39.4   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.6e-40  134.9   1.6    1.7e-09   35.5   0.0    4.3  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.5e-39  133.7   0.0    1.5e-10   38.9   0.0    4.3  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.2e-37  127.6   0.0    8.9e-14   49.4   0.0    4.1  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.4e-37  125.9   0.1    1.2e-17   62.1   0.0    3.9  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.1e-37  124.6   0.0    1.2e-19   68.5   0.0    3.6  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    9.6e-37  124.5   0.0    2.3e-14   51.3   0.0    4.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.9e-36  123.3   0.0    5.9e-11   40.2   0.0    4.3  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.1e-36  122.4   0.1    3.7e-16   57.1   0.0    4.1  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.9e-36  121.9   5.7    1.5e-12   45.3   0.1    4.3  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.1e-35  120.6   0.2    1.2e-11   42.3   0.1    4.3  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      3e-35  119.6   0.0    3.4e-12   44.2   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.3e-34  117.4   0.2    1.4e-15   54.9   0.0    4.0  3  TIGR01288 nodI: nodulation ABC transporter NodI
    3.1e-34  116.6   0.2    2.6e-12   44.5   0.0    4.2  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.4e-34  115.9   0.0    5.8e-08   29.2   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      4e-34  116.1   0.1    2.7e-11   41.4   0.0    4.2  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.3e-34  114.9   0.0    2.5e-09   34.0   0.0    4.2  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-33  114.5   0.0    3.2e-11   40.9   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.2e-33  113.6   0.0    3.4e-08   31.3   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
      1e-32  111.1   0.0    4.1e-10   36.4   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.2e-32  111.0   0.0    4.9e-10   36.4   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.2e-32  111.3   0.3    2.3e-14   51.3   0.0    4.1  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    7.4e-32  108.5   0.0    2.1e-08   31.1   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-31  107.7   0.0    2.5e-13   47.8   0.0    4.2  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    8.3e-31  105.2   0.0    6.8e-09   33.6   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.5e-30  103.5   0.0    5.2e-13   46.9   0.0    4.2  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.3e-30  103.1   0.0    2.5e-14   50.5   0.0    4.1  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      5e-30  102.4   0.0    3.9e-07   27.4   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.3e-30  102.5   0.1    2.8e-13   47.5   0.0    4.2  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      6e-30  102.0   0.1    5.5e-08   29.5   0.0    4.3  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    7.7e-30  101.9   0.3    2.8e-07   28.0   0.0    4.2  4  TIGR01978 sufC: FeS assembly ATPase SufC
    5.8e-29   98.8   0.8    5.6e-09   32.9   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.9e-29   98.8   0.1    1.7e-11   41.2   0.0    4.1  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.5e-28   97.0   0.1    7.1e-12   43.2   0.0    4.2  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.2e-28   96.2   0.0    1.5e-07   27.9   0.0    4.0  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.5e-26   89.2   0.0    1.6e-06   25.6   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      3e-25   86.5   0.6    4.3e-12   43.1   0.0    4.1  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      6e-25   85.8   0.5    1.9e-09   34.9   0.1    4.2  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.5e-25   85.9   0.1    1.2e-10   39.2   0.0    4.2  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.8e-23   80.3   0.1    2.3e-07   28.0   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.2e-22   78.4   0.6    8.4e-06   22.9   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.2e-22   76.3   0.0    1.4e-06   25.0   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    1.7e-21   74.3   0.0      1e-08   32.1   0.0    3.6  2  TIGR01192 chvA: glucan exporter ATP-binding protein
      4e-20   70.0   0.1    1.4e-08   32.2   0.0    4.1  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.4e-18   64.9   0.0    3.9e-06   23.9   0.0    4.3  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.5e-15   52.9   0.0    0.00064   15.1   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-14   50.1   0.0      6e-06   21.2   0.0    3.8  3  TIGR01257 rim_protein: rim ABC transporter
    1.3e-14   52.1   0.0     0.0033   14.8   0.0    4.3  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.7e-14   50.4   0.1    6.5e-05   19.5   0.0    3.3  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      8e-13   44.5   0.1    5.9e-07   25.1   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    5.3e-08   28.7   0.0     0.0078   11.6   0.0    3.9  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    3.6e-06   23.2   0.2      0.015   11.3   0.0    2.8  4  TIGR00630 uvra: excinuclease ABC subunit A
     0.0003   18.4   0.1        0.2    9.2   0.0    2.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0019   14.8   0.0       0.02   11.4   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0024   13.5   8.2       0.39    6.2   0.0    4.5  5  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0037   15.0   0.0       0.26    8.9   0.0    3.1  2  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0039   15.3   0.0          2    6.5   0.0    2.6  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0062   13.3   0.0       0.17    8.6   0.0    2.3  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0072   11.8   4.3       0.16    7.3   0.0    4.1  6  TIGR00606 rad50: rad50


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.7   0.1  5.3e-124  3.4e-122       6     535 ..      72     614 ..      67     623 .. 0.90

  Alignments for each domain:
  == domain 1    score: 406.7 bits;  conditional E-value: 5.3e-124
    TIGR03719   6 tmkrvskvvppkkeilkdislsffpgakiGvlGlnGaGkstllkimaG.vdkefeGealaaegikvGyleqe..Pkldeektvrenveegvaeikealdrfeeisaklaeedad...fdklleeqaklqekidaadawdldskleiamdalr...lpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarq..akskarlaryeelase.esekk....eetaeivippgerlG..dkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsr.dalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkk 535
                   m++vs ++  ++ +l+d +    +g ++G++G nG+Gkst++ki+ G +  ++   ++ + ++++ +l+qe   +ld+++++re++ + ++e++++l+++++ +++l e ++d   +++ +e  ++lq   d  +a++ d k++  md +    l +++++v+++sGG k r+ l+++ll++P++llldePtnhld esv+Wle+fl++ k  +v+v hdr fldnv+  i++   G +++y++nys +l+ k++r+e  +k+ +a++k++k+e++W++s+ +  +  +   +r ++ ++l+s+ +  k+    +++     pp++rl   ++v+++++++ +++  +l+++l + + +   +  +GpnGaGkstlf++i +ke p++G+ ++G  v++ y  q++ d+l  + tv       l+   + ++  + ra +g+f fkG d +kk+++lsGGe++rv l++++ + +n+l+ldePtn ld+ + + leeal+++ G+++vishdr+f+ ++at i a e++ +++ + G+y++y e+k +
  MMETSP1174-20130828|15067_1  72 RMDKVSISFG-NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGdIPPDYGDVIKSSVDLRMAFLRQEfsDDLDPSRSLREELLSVFTEANQVLEKLKATEQRLEETQDDpaaMQEAIEALGELQLDADRLEAYSTDAKVDKIMDQMGfsiLDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKIPIVIVSHDREFLDNVCTKIVDTMGGITYSYDANYSRYLKLKKARFEAWKKTYDAQQKSIKEEMKWIKSNKNKPNmgSSVNSRETQLKKLMSSpDLVKRppndDRKFRFRFPPAPRLNmvEEVVDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKVSVNYFAQNQaDELVLEDTVLA----TLEKAAVTQTYNEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVLVISHDRYFISQVATTICALEDK-ELVMYGGDYRHYMENKPE 614
                  5777877776.99**********************************967888888888899*********94457***************************9999988855433389999999************************9972224577789**********************************************************************************************************************9976555114457899999998654154454221133446889*****964489*********************************************************************9976256666666665....56777899999999******************************************************************************************976.88899********99865 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.3e-11   2.1e-09     320     385 ..      61     133 ..      21     147 .. 0.78
   2 !   41.6   0.0   2.7e-13   1.7e-11     414     523 ..     190     298 ..     161     304 .. 0.89
   3 !   80.2   0.0   5.5e-25   3.5e-23     321     526 ..     405     589 ..     370     592 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.3e-11
    TIGR02857 320 s........slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngae 385
                           sl++++vs+++ +++ +l++   +v+ g +v+lvGa G+GKst++k+l g ++p+ G +   +++
  MMETSP1174-20130828|15067_1  61 AdtqqpgmvSLRMDKVSISFGNHD-VLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVD 133
                  2444456679**********9999.*****************************************98755555 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 2.7e-13
    TIGR02857 414 enir.larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela 523
                  e i+ l++ + +++ +++  ++a++d+++++++  +     ++ +  SgG + R++L ++ll++ ++lllDEPt hLD e+ + +++ l++l     +++v+H+++ + ++
  MMETSP1174-20130828|15067_1 190 EAIEaLGELQLDADRLEAYSTDAKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK--IPIVIVSHDREFLDNV 298
                  555447888888899999999***********99999999999*******************************************9999964..568999**99987664 PP

  == domain 3    score: 80.2 bits;  conditional E-value: 5.5e-25
    TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQk...PllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladki 526
                   + l++v++ y g++   +++ l vep+ ++a +G+ GaGKstl +++l    p+eG+  ++ +    +       ++ + +Q+    l++e+tv++ ++ a   ++ +e+++ l +  +     +        + ++ ++LSgG++ R+aL r++l +a+ll+lDEPt hLD  +++ ++eal+++    +vl+++H++  + ++ ++
  MMETSP1174-20130828|15067_1 405 VVDLDEVTHGYDGST-LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK----V-------SVNYFAQNqadELVLEDTVLATLEKAAVTQTYNEIRALLGQFLF-----KG-----DDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHDRYFISQVATT 589
                  7899***********.********************************************9877....2.......34455554111467788888888777777777777655554444.....33.....36888899*******************************************9994..5689******9988877665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.1e-11   7.1e-10       2      68 ..      71     137 ..      70     146 .. 0.94
   2 !   48.3   0.0   2.6e-15   1.7e-13     113     209 ..     209     304 ..     163     312 .. 0.81
   3 !   22.9   0.0   1.4e-07   9.1e-06      10      63 ..     414     467 ..     406     490 .. 0.76
   4 !   42.8   0.0   1.2e-13     8e-12     132     216 ..     518     599 ..     504     612 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.1e-11
    TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkal 68 
                  lr+++vs++ g+  +++d + ++ +G   gl+G nG+Gkst++++l G + pd G+v  +++dl+  
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMA 137
                  899**********************************************************999865 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 2.6e-15
    TIGR03873 113 edaevvdralarvelssl..adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvv 209
                  + ++ vd+++ +++ s l  a+ ++s +sGG + r+ l++ l qeP++llldePtnhld+++   l +++++l   ++ +v+  hd ++  +vc ++v 
  MMETSP1174-20130828|15067_1 209 STDAKVDKIMDQMGFSILddAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL---KIPIVIVSHDREFLDNVCTKIVD 304
                  34556799999999887744677899**********************************9988888899999...89999999******999999885 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.4e-07
    TIGR03873  10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlaga 63 
                    +g ++ +++ + + +    + lGPnG+Gkstl+r++   +ap++G+ +l+ +
  MMETSP1174-20130828|15067_1 414 GYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK 467
                  55666666666666555566789*************************998754 PP

  == domain 4    score: 42.8 bits;  conditional E-value: 1.2e-13
    TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvv 216
                  ++++s lsGGe+ rv l+r +    +ll+ldePtnhld+ a+  l +++++       v+v  hd  +  +v+  +  l+   +v
  MMETSP1174-20130828|15067_1 518 NKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY---DGSVLVISHDRYFISQVATTICALEDKELV 599
                  578999***********************************98888888887...444555556666666666666655554444 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.8e-12   1.1e-10     303     399 ..      44     134 ..      25     142 .. 0.79
   2 ?    3.0   0.2       0.1       6.6     285     322 ..     156     191 ..     154     221 .. 0.72
   3 !   33.5   0.0   5.9e-11   3.8e-09     468     512 ..     232     276 ..     203     291 .. 0.82
   4 !   69.6   0.0   6.7e-22   4.3e-20     335     529 ..     406     579 ..     393     580 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 1.8e-12
    TIGR02868 303 aaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsv 399
                  a eR+ e  +     +++ +  a +++++ ++l++ ++s+s+ ++  vl++ + +++ G rv +vGa G+GKst++++l g ++p+ G+v  ++v++
  MMETSP1174-20130828|15067_1  44 AVERVREDRR-----PAGRVRIADTQQPGMVSLRMDKVSISFGNH-DVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  4455544444.....44566666677778899**********876.78******************************************9888765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.1
    TIGR02868 285 ealaalpaAaqqltrvraaaeRieevldakvevaeasa 322
                  e l+++++A q l++++a  +R+ee++d++   +e  a
  MMETSP1174-20130828|15067_1 156 ELLSVFTEANQVLEKLKATEQRLEETQDDPAAMQE--A 191
                  678899**********************9933222..2 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 5.9e-11
    TIGR02868 468 ggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelle 512
                    +++SGG + R+ l ++Ll++ ++llLDEPt hLD e  e l +
  MMETSP1174-20130828|15067_1 232 SVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLEN 276
                  5678********************************998765544 PP

  == domain 4    score: 69.6 bits;  conditional E-value: 6.7e-22
    TIGR02868 335 lelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaq...daHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  + l +++ +y+g+   ++++ l +ep  r+a +G+ GaGKstL  +++   +p++G+ tl      ++        v ++aq   d  + + tv+  l  a+ + t +e+ a+L     ++ l +       +++++ ++lSGGe+ R+al R++l++a++l+LDEPt hLD  ++ e+le+ l+  +g  v++++h+
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYDGST-LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGP----KV-------SVNYFAQnqaDELVLEDTVLATLEKAAVTQTYNEIRALL-----GQFLFK-----GDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK-EMLEEALQHYDG-SVLVISHD 579
                  56789999**9995.5*******************************************987....22.......344555411144578888888888888888888887665.....566666.....457899999*********************************9875.677777776666.47889986 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.7e-08   1.1e-06       2      56 ..      74     128 ..      73     143 .. 0.88
   2 !   45.9   0.0   1.5e-14   9.7e-13      98     203 ..     197     302 ..     185     305 .. 0.84
   3 !   65.1   0.0     2e-20   1.3e-18       2     204 ..     409     590 ..     408     592 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.7e-08
    TIGR03608   2 kniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvi 56 
                   ++s +f+++ +l++   ++ +G+ v +vG  G+GKst++ il     +d g+vi
  MMETSP1174-20130828|15067_1  74 DKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVI 128
                  67999*************************************9876666666665 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 1.5e-14
    TIGR03608  98 elalklkkkskkekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva.ekadrv 203
                  el l   +++  +++ k+ ++++++g+    + +  + ++sgG k R+ l +ill+e++++l DEPt  LD ++ e + ++l++lk     i+iv Hd e   + + ++
  MMETSP1174-20130828|15067_1 197 ELQLDADRLEAYSTDAKVDKIMDQMGFsiLDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKI---PIVIVSHDREFLdNVCTKI 302
                  677888888888999999999***998435678889**************************************9999999998875...59******98651455555 PP

  == domain 3    score: 65.1 bits;  conditional E-value: 2e-20
    TIGR03608   2 kniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfa..Llenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvi 204
                   +++  +   +++++l l +e  + +a +G  G+GKstl  i+   e +++g+ +l  k                ++ y  qn a  L+ ++tv   le          +++ +++  +l ++ +   + +kki +lsgGek Rval r++l++++l++ DEPt  LD   +e++ e l++    +  ++++ Hd +  +++  +i
  MMETSP1174-20130828|15067_1 409 DEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKV---------------SVNYFAQNQAdeLVLEDTVLATLEK------AAVTQTYNEIRALLGQFLFkGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY---DGSVLVISHDRYFISQVATTI 590
                  6788999999*******************************************9997766...............3455556554116666666665554......445556667778888888856889******************************************9998888765...45678889**99988877665 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   9.8e-12   6.3e-10     465     532 ..      70     135 ..      42     144 .. 0.81
   2 !   37.4   0.0   3.2e-12     2e-10     600     673 ..     232     303 ..     187     312 .. 0.82
   3 !   27.0   0.0   4.3e-09   2.8e-07     464     526 ..     404     464 ..     396     487 .. 0.88
   4 !   39.4   0.0   8.1e-13   5.2e-11     597     683 ..     517     602 ..     481     610 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 9.8e-12
    TIGR03375 465 eielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdir 532
                  ++++++vs ++   ++ +L++ + +++ G++v+++G +G+GKst++k+l g + p+ G v+   vd+r
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFG--NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLR 135
                  345667777774..5689*******************************************9999987 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 3.2e-12
    TIGR03375 600 rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriiv 673
                  + +s+SgG +  ++l+++ll++p+illLDEPt++lD +s e l + L++l     +v+v+H  ++L+ v   iv
  MMETSP1174-20130828|15067_1 232 SVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK--IPIVIVSHDREFLDNVCTKIV 303
                  55789**********************************999999999875..5799****9999987755555 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 4.3e-09
    TIGR03375 464 GeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvll 526
                    ++l++v+  Y ++  +  +n+ l ++p +++a +G +G+GKstl +++l   +p+eG+ +l
  MMETSP1174-20130828|15067_1 404 EVVDLDEVTHGYDGS--TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL 464
                  567889999999664..6789**************************************9876 PP

  == domain 4    score: 39.4 bits;  conditional E-value: 8.1e-13
    TIGR03375 597 igerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslL.elvdriivldkGrivadG 683
                  ++ + ++LSgG +  val+R++l+  ++l+LDEPt++lD  + e l e+L+++  d  +++++H   ++ ++++ i  l++  +v+ G
  MMETSP1174-20130828|15067_1 517 VNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHDRYFIsQVATTICALEDKELVMYG 602
                  5667789*******************************************986..445666667555551666788889999999988 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.7e-11   1.7e-09       2      67 ..      70     135 ..      69     143 .. 0.94
   2 !   31.7   0.0   3.8e-10   2.4e-08     120     212 ..     210     302 ..     188     311 .. 0.84
   3 !   29.8   0.0   1.5e-09   9.7e-08       3      64 ..     406     467 ..     404     480 .. 0.91
   4 !   34.0   0.0     8e-11   5.1e-09     106     224 ..     485     602 ..     466     617 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.7e-11
    TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdlt 67 
                   L++++vs+sf+    l+d + +v++g+   ++G+nG Gk+t++ ++ G + pd G+v+ ++ dl+
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLR 135
                  5899******************************************************99988875 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.8e-10
    TIGR03411 120 ekerieevleligLe..ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekv 212
                  ++++++++++++g +  + a++  ++ s G k ++ ++ +l+qep++lllDeP+  +  e  e   ++l++l+    +v+v hD ef++++ +k+
  MMETSP1174-20130828|15067_1 210 TDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK--IPIVIVSHDREFLDNVCTKI 302
                  45667777777765411556667788999*****************************************996..689***********998876 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 1.5e-09
    TIGR03411   3 LevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                  +++++v+  +dg +  ++l l ve+++  + +GpnGaGk+tl+ +i  k  p+eG++++  k
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK 467
                  67899***************************************************998755 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 8e-11
    TIGR03411 106 ksvlallfarlskeekerieevleligL.eekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeG 224
                   +vla+l + + +++ ++i+++l +     + ++kk ++Ls G+k ++ ++ +++  ++ll+lDeP+  +    +e   e l++   + sv+v+ hD  f+ ++a+++  l++ ++++ G
  MMETSP1174-20130828|15067_1 485 DTVLATLEKAAVTQTYNEIRALLGQFLFkGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHDRYFISQVATTICALEDKELVMYG 602
                  5678889888899999999999976655158899*************************************99999999999976..569*********************988876665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.9e-08   2.5e-06       3      63 ..      72     131 ..      69     145 .. 0.89
   2 !   38.9   0.0   2.4e-12   1.6e-10     102     208 ..     198     303 ..     188     308 .. 0.87
   3 !   25.3   0.0   3.6e-08   2.3e-06       1      62 [.     405     465 ..     405     484 .. 0.88
   4 !   38.9   0.0   2.4e-12   1.5e-10     129     213 ..     515     596 ..     478     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.9e-08
    TIGR02673   3 elekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevag 63 
                  +++kvs ++ +++++L+d + +++ g+ + l+Ga G Gk+t++k+l g   p+ G+v  + 
  MMETSP1174-20130828|15067_1  72 RMDKVSISF-GNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSS 131
                  7899*****.789******************************************996554 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 2.4e-12
    TIGR02673 102 lalevrgkkeeeiqkrveevlelvgle..dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                  l l  ++ ++ +++ +v+++++++g++  d a+   +++sgG + R+++ + ++++P++ll DePt  lD e  e + + l++l    + +++++hd+e++++v ++++
  MMETSP1174-20130828|15067_1 198 LQLDADRLEAYSTDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL---KIPIVIVSHDREFLDNVCTKIV 303
                  567778888889999*********97644788889999********************************99888777777666...578*************988877 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 3.6e-08
    TIGR02673   1 iielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGeveva 62 
                  +++l++v++ y  g +  +++ l +e+ + +   G+ GaGk+tl++++l +e p++G+ ++ 
  MMETSP1174-20130828|15067_1 405 VVDLDEVTHGY-DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  58999******.566789***********99999***********************98875 PP

  == domain 4    score: 38.9 bits;  conditional E-value: 2.4e-12
    TIGR02673 129 dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                  d ++++ ++lsgGe+ Rva+ R +++  +ll+ DePt  lD   +e + + l+   ++  +v+v +hd+ ++++v++ ++ le++
  MMETSP1174-20130828|15067_1 515 DDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQ---HYDGSVLVISHDRYFISQVATTICALEDK 596
                  66788889*********************************998887666555...4556899******************9986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.4e-09   2.2e-07       3      63 ..      73     133 ..      71     142 .. 0.90
   2 !   41.7   0.0     3e-13   1.9e-11      98     202 ..     201     303 ..     191     317 .. 0.87
   3 !   49.4   0.0   1.4e-15   8.9e-14       3     210 ..     408     599 ..     406     625 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.4e-09
    TIGR00968   3 ianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrd 63 
                  +++vs +fG+  +l+d   ev+tG+ v+l+G  G Gkst+++++ G   pd G ++ +  d
  MMETSP1174-20130828|15067_1  73 MDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVD 133
                  678999*****************************************99**9999876666 PP

  == domain 2    score: 41.7 bits;  conditional E-value: 3e-13
    TIGR00968  98 eirkkdkakikakveellelvqleklgdryp..sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadriv 202
                  +  + ++  + akv+++++ ++++ l+d     s +sGG + r+ l++ l  ep++llldep   ld +      +wl ++ +++k+  v+v+hd+e   +v  +iv
  MMETSP1174-20130828|15067_1 201 DADRLEAYSTDAKVDKIMDQMGFSILDDAQSsvSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLE----SVEWLENFLNDLKIPIVIVSHDREFLDNVCTKIV 303
                  45577888999**************99876522689*******************************75....567999999***************9999999998 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 1.4e-15
    TIGR00968   3 ianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqle.klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkie 210
                  +++v+  +   + ++++ l v+  + +a+lGp G+Gkstl+r+i   e p++G+ +l  +           + +  q+ a    l ++d +   l  +k   +++ + +  ll    ++ +  ++  sqlsGG++ rval+r +    ++l+ldep   ld   ++ l + l++    v     +++hd+    +va  i  le+ ++ 
  MMETSP1174-20130828|15067_1 408 LDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKVS---------VNYFAQNQA--DELVLEDTVLATL--EKAAVTQTYNEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVL----VISHDRYFISQVATTICALEDKELV 599
                  567888888889999999************************************99966543.........455556655..5677777776655..467777777888888865444414457889******************999*********************99998877664....4679999999999888888776654 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   3.7e-14   2.4e-12       2     171 ..      72     279 ..      71     290 .. 0.75
   2 !   62.1   0.0   1.9e-19   1.2e-17       4     187 ..     409     580 ..     406     590 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 3.7e-14
    TIGR01189   2 eaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeL.sa.lEnLkfyaallq...................................seqktveealekvgLsgl..edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella 171
                   +++++++ g++ +le+ + e+ +G+ + ++G nG GK+t+++il G ++p+ G v  ++ +l      ++e +  l  + +l++eL s+ +E  + +++l +                                   s++ +v++ ++++g s l  ++  v++ s G k R++l+++ll++  + +LDEPt  lD e+ve l++ l+
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMAF-LRQEFSDDLDPSRSLREELlSVfTEANQVLEKLKAteqrleetqddpaamqeaiealgelqldadrleaySTDAKVDKIMDQMGFSILddAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLN 279
                  56788899999********************************************987766544332.33333444444444444432221122222222221222333555566677888999999999999998876666999******98765115667999**************************************998876 PP

  == domain 2    score: 62.1 bits;  conditional E-value: 1.9e-19
    TIGR01189   4 eelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldg..lKaeLsalEnLkfyaallqseqktveealekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                  +e++   ++ +l+e+l++ + + + ++  GpnG+GK+tL Ri+     p++G+ +l  k           ++ y + +++  l  e ++l  L+     ++++ +++ + l +   +g + +  ++qLs G k R+al+r++l+ a l +LDEPt  lD  + e+l+e+l++    +G+vl+ +h  
  MMETSP1174-20130828|15067_1 409 DEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK----------VSVNYFAQNQAdeLVLEDTVLATLEKA--AVTQTYNEIRALLGQFLFKGDDvNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQH---YDGSVLVISHDR 580
                  5677778999**********************************************933..........344555544441133444455555433..333334468888888877765427889*******************************************9974...478888888876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.9e-21   1.2e-19       2     220 ..      71     306 ..      70     325 .. 0.79
   2 !   19.2   0.0   2.2e-06   0.00014       3      61 ..     407     464 ..     405     507 .. 0.81
   3 !   32.4   0.0     2e-10   1.3e-08     138     228 ..     516     602 ..     493     612 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.9e-21
    TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk.....kkel...rklrkkigmifqeynli.erltvlenvLsgr....lgakstlksllglfseedkekAlelLervg.........laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglk 220
                  l+++++s +++ ++ +l++   e++ G+ v+++G  G Gkst+++ +n+ + ++ g++  +  +++ +        +l   r+lr+++  +f e n + e+l++ e  L        +++++++ l +l  ++d+ +A+++ ++v+         + + a++ +++ sGG + R+++++ l+q+p+++l DEP+  LD +s +     l +  ++ +i +++  H+ ++  + +++iv   
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFG-NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMAFlrqefSDDLdpsRSLREELLSVFTEANQVlEKLKATEQRLEETqddpAAMQEAIEALGELQLDADRLEAYSTDAKVDkimdqmgfsILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVE----WLENFLNDLKIPIVIVSHDREFLDNVCTKIVDTM 306
                  78999******.999*****************************************9999988887543212223343344899********999876377788777776651111567777777777778899999997655543322222244789999*************************************99865....5666667788999999**************9754 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.2e-06
    TIGR02315   3 evenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsill 61 
                   +++++  y+ g++ ++n+ l +++ + +a +G+ GaGkstl+r i   + +++g+ +l
  MMETSP1174-20130828|15067_1 407 DLDEVTHGYD-GSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL 464
                  5677888888.89999******************************9999999997654 PP

  == domain 3    score: 32.4 bits;  conditional E-value: 2e-10
    TIGR02315 138 laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdg 228
                    +k+ +qLsGG++ Rva++R ++  ++l++ DEP+  LD  + ++    l +  ++ + +v+v  H+  +  + a+ i +l++ e+v +g
  MMETSP1174-20130828|15067_1 516 DVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEM----LEEALQHYDGSVLVISHDRYFISQVATTICALEDKELVMYG 602
                  56899***********************************876654....4455566777888888*****************99998765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.1e-09   6.8e-08       2      66 ..      71     135 ..      70     141 .. 0.90
   2 !   33.0   0.0   1.4e-10   8.9e-09     109     178 ..     210     281 ..     197     290 .. 0.84
   3 !   51.3   0.0   3.5e-16   2.3e-14       4     176 ..     408     567 ..     405     578 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.1e-09
    TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlr 66 
                  l ++++s ++g++ +l+d + +v++g+ v L+G nG Gkst++++l + +  + g++    +dlr
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLR 135
                  78999******************************************999999998877777666 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 1.4e-10
    TIGR03864 109 aeerieealarlg..laeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrel 178
                  + ++++++++++g  + + a++ v + +GG + r+ + + ll eP++LLlDe+t  LD+es + l + +++l
  MMETSP1174-20130828|15067_1 210 TDAKVDKIMDQMGfsILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL 281
                  56677777777651156899999**************************************98887766665 PP

  == domain 3    score: 51.3 bits;  conditional E-value: 3.5e-16
    TIGR03864   4 veglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlgla.eraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                  ++++++ y  ++ ++++ l v++ + +a LGpnGaGkstLf ++    + +eg+ ++ G +++ +    +a+     q+  l l+ +v       a+L+  + +++ ++i+++l ++ ++ +  ++k+ +L+GG++ rv + r +l   +lL+lDe+t  LDi ++++l e+++
  MMETSP1174-20130828|15067_1 408 LDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL-GPKVSVNY---FAQ----NQADELVLEDTV------LATLEKAAVTQTYNEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQ 567
                  6789999*************************************9999999999875.55554332...221....244444444444......5777778889999*******9998873567889****************************************9998776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   9.2e-13   5.9e-11       2      65 ..      70     133 ..      69     142 .. 0.92
   2 !   32.6   0.0   1.9e-10   1.2e-08     105     179 ..     205     281 ..     185     363 .. 0.81
   3 !   23.6   0.0   1.1e-07   6.8e-06       4      59 ..     407     462 ..     404     475 .. 0.88
   4 !   21.4   0.0   4.9e-07   3.1e-05     114     165 ..     503     555 ..     486     566 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 9.2e-13
    TIGR03522   2 svevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavaged 65 
                  s+++ ++s ++g++++l++ ++e++ G+ vG++G nG Gkst+mkil g +++d G v  +  d
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVD 133
                  889999**************************************************98766555 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 1.9e-10
    TIGR03522 105 lkgrklkkrveelielvGlk..aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei 179
                  l+    + +v+++++++G++   ++   ++ +s G++ r+Gl+k ll +P++l+ldePt  ld + +  + + ++++
  MMETSP1174-20130828|15067_1 205 LEAYSTDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL 281
                  555667889********97632688999***********************************88877677666665 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.1e-07
    TIGR03522   4 evsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsv 59 
                   + +++  y      +++ + +e+ + + flGPnGaGkstl +i+    +++ G+ 
  MMETSP1174-20130828|15067_1 407 DLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTC 462
                  567889999999999*****************************988877777775 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 4.9e-07
    TIGR03522 114 veelielvGlka.eqhkkigalskGyrqrvGlakallhdPkvlildePttGld 165
                  +++l+ +  +k  +  kki++ls G + rv l++ +l   ++l+ldePt  ld
  MMETSP1174-20130828|15067_1 503 IRALLGQFLFKGdDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLD 555
                  5555555544441568**********************************999 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.5e-09   4.8e-07       4      67 ..      70     133 ..      67     141 .. 0.91
   2 !   30.2   0.0   8.6e-10   5.5e-08     101     198 ..     200     295 ..     192     310 .. 0.82
   3 !   57.1   0.0   5.8e-18   3.7e-16       3     224 ..     404     609 ..     402     656 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 7.5e-09
    TIGR03265   4 ylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrd 67 
                   l++++++ +f+++ +l+d   +v+ g+ v l+G  GCGk+t+++i+ G   +d G ++++  d
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVD 133
                  67899999*****************************************999999999887666 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 8.6e-10
    TIGR03265 101 LknkklkreevaerveelLelvgls..gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeea 198
                  L + +l+   ++++v+++++ +g+s  + ++   + +sGG + r+ L++ l   P++LLLDeP   LD    e L + l+     l++  ++v hd+e  
  MMETSP1174-20130828|15067_1 200 LDADRLEAYSTDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLN----DLKIPIVIVSHDREFL 295
                  5566777888999*******9997622556667789********************************999888877665....56899999***99865 PP

  == domain 3    score: 57.1 bits;  conditional E-value: 5.8e-18
    TIGR03265   3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvgls.gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                  e ++++e+++ ++  t ++++ l v+  + +++LGP G Gk+tL+rii   e +++G+ +lg +   +  +q+       q+     +l +++ +   L++     +++ + ++ lL    ++ +  +k  +qlsGG + rvaL+r + +  +lL+LDeP   LD   +e L e l++    +    +++ hd+    ++a  i  +++ ++  +g     Y 
  MMETSP1174-20130828|15067_1 404 EVVDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKVSVNYFAQN-------QA----DELVLEDTVLATLEKAA--VTQTYNEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSV----LVISHDRYFISQVATTICALEDKELVMYGGDYRHYM 609
                  567889999*************************************************998876544444333.......33....45666677766676655..44556667777765555514457888*****************************************99887766554....556777666666666665555555555555544444 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.9e-08   3.1e-06       3      52 ..      80     129 ..      78     139 .. 0.91
   2 !   45.3   0.1   2.3e-14   1.5e-12      81     209 ..     186     317 ..     158     382 .. 0.67
   3 !   20.6   0.0   7.6e-07   4.9e-05       8      51 ..     420     463 ..     413     468 .. 0.84
   4 !   31.5   0.1   3.7e-10   2.4e-08     103     208 ..     501     604 ..     477     676 .] 0.72

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 4.9e-08
    TIGR01188   3 ygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarv 52 
                  +g+   +++ + +v+ g+ +gl+G nG GK+t++k+L + ++Pd G ++ 
  MMETSP1174-20130828|15067_1  80 FGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIK 129
                  888999999*************************************8765 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 2.3e-14
    TIGR01188  81 Ltarenlellgely....glpkkeaeeraeellel..velkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpe 209
                   + +e +e lgel+     l+   +++++++++++  +++ + a+  v  +sgG + r+ l+  l+++P++l LDEPt  LD ++ + + +++++l   ++ i++ +h+ e  d+++ ++     G     d+  
  MMETSP1174-20130828|15067_1 186 AAMQEAIEALGELQldadRLEAYSTDAKVDKIMDQmgFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL---KIPIVIVSHDREFLDNVCTKIVDTMGGITYSYDANY 317
                  33344555555554222134455567788888876337899********************************************99999887766...589***************999776666666666654 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 7.6e-07
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtar 51 
                    +++ l ve  + +++LGPnGAGK+t+ +++     P++Gt +
  MMETSP1174-20130828|15067_1 420 LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCT 463
                  566778888888999****************9999999999876 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 3.7e-10
    TIGR01188 103 eraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtp 208
                  + ++ ll ++ +k +  +kk+ ++sgG + r+ l++ +++  ++l LDEPt  LD  +++++ +   +l++ + ++l+ +h+ + + ++a  +  ++  +++  ++ 
  MMETSP1174-20130828|15067_1 501 NEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEE---ALQHYDGSVLVISHDRYFISQVATTICALEDKELVMYGGD 604
                  556667777766536789*****************************************99986...56667889***************99999998888887753 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.6e-11   1.6e-09       4      54 ..      82     132 ..      80     168 .. 0.90
   2 !   30.2   0.0   9.4e-10     6e-08     105     188 ..     211     293 ..     187     295 .. 0.84
   3 !   42.3   0.1   1.8e-13   1.2e-11       5     185 ..     418     578 ..     413     582 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.6e-11
    TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe 54 
                  + +vl++   +v+ g++++l+GanG+Gkst+++ lnG + P  G v+    
  MMETSP1174-20130828|15067_1  82 NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSV 132
                  4689*****************************************997655 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 9.4e-10
    TIGR01166 105 errvrealaavdisgle..erpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                  +++v++ +++++ s l+  +  ++ +sgG k r+ ++ ++  +p++llldePt  ld + +e l + l+ l+     +vi +hd +
  MMETSP1174-20130828|15067_1 211 DAKVDKIMDQMGFSILDdaQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDRE 293
                  5678888888887766511567889*****************************************999997...57899999965 PP

  == domain 3    score: 42.3 bits;  conditional E-value: 1.8e-13
    TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfa.advdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  +  +++l l ve  +++a+lG+nGaGkstl++ +     P++G+ +l+ +               v++  q+  d l+   +v    ++    +  + +e+++ + + l + d  +  ++ +++lsgGek rva++ ++   +++l+ldePt  ld   +e+l e+l++   +G  +vis h
  MMETSP1174-20130828|15067_1 418 STLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK-------------VSVNYFAQNQADELVLeDTVLA--TLEKAAVTQTYNEIRALLGQFLFKGD--D-VNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVIS-H 578
                  55678899999999******************************998754.............3566777776665533033332..23344455566777777777665533..3.4678999*****************************************99875..56666665.5 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.4e-07   1.6e-05      18      69 ..      83     134 ..      75     144 .. 0.90
   2 !   33.2   0.0   1.2e-10   7.7e-09     133     208 ..     227     298 ..     201     309 .. 0.80
   3 !   14.5   0.0   6.3e-05    0.0041      19      65 ..     419     465 ..     409     485 .. 0.85
   4 !   44.2   0.0   5.4e-14   3.4e-12     100     216 ..     482     595 ..     473     600 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.4e-07
    TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkel 69 
                   +vl++   e+++g+ v++vG+ G Gkst++ +l g   p  G+v+ +  +l
  MMETSP1174-20130828|15067_1  83 HDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  5899********************************9999999998776666 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 1.2e-10
    TIGR02211 133 krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl 208
                  + ++   s +sGG + r+ +++ l+++P+++l dePt +ld ++ + + ++l++    +++ +++v+hd+e+ +++
  MMETSP1174-20130828|15067_1 227 DDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLND----LKIPIVIVSHDREFLDNV 298
                  556777899*********************************999887777665....5799*********98766 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 6.3e-05
    TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllk 65 
                  ++++++ l +e  + +a +G  G+Gkstl+ ++   + p +G+ +l 
  MMETSP1174-20130828|15067_1 419 TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  678999************************************98874 PP

  == domain 4    score: 44.2 bits;  conditional E-value: 5.4e-14
    TIGR02211 100 alenvamPlliskkskkeakerakellekvgle.krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvl.elkd 216
                  +le+ ++ +l  k  ++++ ++  +ll ++ ++ + +nkk s+lsGGe+ rva++r +++  +l++ dePt +ld  +     e+l+e  ++++ ++lv++hd+ ++ ++  ++  l+d
  MMETSP1174-20130828|15067_1 482 VLEDTVLATL-EKAAVTQTYNEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK----EMLEEALQHYDGSVLVISHDRYFISQVATTIcALED 595
                  5666666554.5666777777778888887765378***************************************8765....57788889999*************998776524555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.7e-10   1.8e-08       4      66 ..      70     130 ..      67     168 .. 0.81
   2 !   24.6   0.0   3.7e-08   2.4e-06     122     173 ..     223     273 ..     203     309 .. 0.74
   3 !   54.9   0.0   2.1e-17   1.4e-15       4     181 ..     405     569 ..     402     604 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 2.7e-10
    TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlge 66 
                  ++ + +vs s+g++ v++d ++ + +g+  gl+g ng+gkst+ +++ g i+pd g +   ++
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVI--KS 130
                  5677899*************************************************863..44 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.7e-08
    TIGR01288 122 farleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhl 173
                  f+ l+  a+  v+++sgg k r+ l++ l+++p++l+ldept  ld  +   
  MMETSP1174-20130828|15067_1 223 FSILD-DAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEW 273
                  55444.68999**********************************9876544 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 2.1e-17
    TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsl 181
                   +dl +v++ y +  + ++l + +   + + +lgpngagkst+ r++l   +p+eg+ t+ g +v  +           +q d+l +e tv   l          t++ +e+   l +f       + ++++lsgg k r++l+r ++   +ll+ldept  ld  a+ ++ e l+  
  MMETSP1174-20130828|15067_1 405 VVDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL-GPKVSVN-YF------AQNQADELVLEDTVLATLEK-----AAVTQTYNEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY 569
                  5899*****************************************************985.5544332.23......34688888888888666543.....345666666666677888889999********************************************99988754 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00012    0.0074      15      54 ..      88     127 ..      75     136 .. 0.83
   2 !   44.5   0.0     4e-14   2.6e-12     101     202 ..     203     302 ..     191     310 .. 0.84
   3 !    9.0   0.0    0.0024      0.16      20      57 ..     428     465 ..     417     476 .. 0.86
   4 !   44.2   0.0   4.8e-14     3e-12     125     210 ..     517     598 ..     491     639 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00012
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                  d+  e+ + ++++l G+ G+Gk+++++++ G + pd g +
  MMETSP1174-20130828|15067_1  88 DATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDV 127
                  6777888889*********************999998876 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 4e-14
    TIGR02142 101 kraraeerriseekvielLgiehL..leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrv 202
                   r +a +++++ +k+++ +g + L   +  +++ sGG k R+++++ lL +P++Ll+DeP   LD ++    + +Le+  ++lkiPi+ vsH+ + +  +  ++
  MMETSP1174-20130828|15067_1 203 DRLEAYSTDAKVDKIMDQMGFSILddAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES----VEWLENFLNDLKIPIVIVSHDREFLDNVCTKI 302
                  566677788899999999999988334567899********************************976....679*****************987766666555 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0024
    TIGR02142  20 lpgkgvtalFGrsGsGktslirliaGLtrpdegeivld 57 
                  ++ k+++a  G  G+Gk++l r+i   + p+eg  +l 
  MMETSP1174-20130828|15067_1 428 VEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  6678899*****************99999999988775 PP

  == domain 4    score: 44.2 bits;  conditional E-value: 4.8e-14
    TIGR02142 125 leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                  ++++ ++LsGGek Rva++R +L+  +LL++DeP   LD + k+     Le+  ++ +  +l +sH+   + ++a ++  led  +
  MMETSP1174-20130828|15067_1 517 VNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKE----MLEEALQHYDGSVLVISHDRYFISQVATTICALEDKEL 598
                  778899************************************98....58999999999****************99999998665 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     9e-10   5.8e-08     472     538 ..      63     129 ..      23     144 .. 0.77
   2 !   28.8   0.0   1.2e-09   7.7e-08     583     670 ..     203     290 ..     188     304 .. 0.90
   3 !   26.0   0.0   8.1e-09   5.2e-07     473     537 ..     401     463 ..     357     472 .. 0.84
   4 !   26.5   0.0     6e-09   3.8e-07     596     677 ..     501     585 ..     467     612 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 9e-10
    TIGR03796 472 ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilf 538
                  ++  G v lr  + + s  ++ ++ed + +++ G rv lvG+ G+Gkst+ k++ G   p  G+++ 
  MMETSP1174-20130828|15067_1  63 TQQPGMVSLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIK 129
                  5667999998888888888999**********************************99998888865 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 1.2e-09
    TIGR03796 583 edlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH 670
                  ++l+    DA ++  + ++      + + + + +sGG + R+ + + L ++P iL+lDE t  LD e  + +++ l    + ++iv+H
  MMETSP1174-20130828|15067_1 203 DRLEAYSTDAKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKIPIVIVSH 290
                  5666778899998888888889999999999********************************************************9 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 8.1e-09
    TIGR03796 473 kLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                   ++  v+l++vt+gy      l e++ l ++p  r+A+ G+ G+Gkst+ +++    +p +G+ +
  MMETSP1174-20130828|15067_1 401 MVEEVVDLDEVTHGYDGS--TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCT 463
                  456689*********876..9********************************988888888765 PP

  == domain 4    score: 26.5 bits;  conditional E-value: 6e-09
    TIGR03796 596 dvilarpggye...aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd 677
                  ++i a+ g++     ++++  + lsGG++ R+ + R + +   +L+lDE t  LD  + ++++e+l++   ++++++H    i +
  MMETSP1174-20130828|15067_1 501 NEIRALLGQFLfkgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVLVISHDRYFISQ 585
                  45666666664111468888899*******************************************************6555544 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   9.1e-10   5.8e-08       1      60 [.      71     130 ..      71     142 .. 0.91
   2 !   36.9   0.0   9.8e-12   6.3e-10      85     196 ..     192     308 ..     167     325 .. 0.74
   3 !   41.4   0.0   4.2e-13   2.7e-11       4     202 ..     409     598 ..     406     617 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 9.1e-10
    TIGR03740   1 letknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilld 60 
                  l+++++s +f++++v+++ + +v+  +  gl+G nG+Gkst++k+l G + ++ G+++  
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKS 130
                  56789999*********************************************9998755 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 9.8e-12
    TIGR03740  85 ltarenlkvrtlllgl..pesrieevlkivdle..ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh...ilsev.elladhiGi 196
                  + a  +l++ +  l+    +++++++++ ++++  ++ +  ++ fs G k r+G++  ll++P++l+ldePtn ld   ++ l ++++ ++   i +++ sh    l +v  +++d +G 
  MMETSP1174-20130828|15067_1 192 IEALGELQLDADRLEAysTDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHdreFLDNVcTKIVDTMGG 308
                  5556666665554433115678889998887652266778899**********************************99999999998886...66777777333455542455666654 PP

  == domain 3    score: 41.4 bits;  conditional E-value: 4.2e-13
    TIGR03740   4 knlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl..kkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdle.ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGkl 202
                  ++++  +   ++ +n+ l v+ ++  ++lGpnGaGkstl++++     +++G  +l  + ++ + +  ++   l+ + ++   l++ e   v+ +      ++i  +l    ++ ++  kk +q+s G k r+ ++  +l   +ll+ldePtn ld    + l e ++ +     +v++ sh    ++++a  i  +++ +l
  MMETSP1174-20130828|15067_1 409 DEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK-VSVNYFaqNQADELVLEDTV---LATLEKAAVTQTY-----NEIRALLGQFLFKgDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDG---SVLVISHDRYFISQVATTICALEDKEL 598
                  67888999999******************************************999665.44444300334444444443...3334444444444.....45666665554441567899***********************************8888888888777654...677778888888888888877776655 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   6.6e-10   4.3e-08     452     517 ..      71     134 ..      59     163 .. 0.86
   2 !   23.8   0.0   4.7e-08     3e-06     567     643 ..     214     290 ..     178     303 .. 0.84
   3 !   34.0   0.0     4e-11   2.5e-09     452     510 ..     406     462 ..     399     466 .. 0.94
   4 !   21.6   0.0   2.2e-07   1.4e-05     587     674 ..     522     611 ..     517     620 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 6.6e-10
    TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdl 517
                  +++d+v+  +    + vL+d + +++ G+ v++vGa G+GKSt++++L g   P+ G v+    dl
  MMETSP1174-20130828|15067_1  71 LRMDKVSISF--GNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  4566777776..5678**********************************9999999998766666 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 4.7e-08
    TIGR03797 567 leeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                  +++ +++m  ++    + + ++ SGG + R+ + + l + P+ill+DE T  LD ++ +   + l+ lk+  +++ H
  MMETSP1174-20130828|15067_1 214 VDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKIPIVIVSH 290
                  55555666666666667788999************************************************999999 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 4e-11
    TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                  +++d+vt  Y  dg++ ++++ l +ep + +a+ G+ G+GKStl+r++L  e P++G+ 
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGY--DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTC 462
                  7899999999..9********************************************86 PP

  == domain 4    score: 21.6 bits;  conditional E-value: 2.2e-07
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTi.rnadrilvleeGrvveq.GsyeeLlak 674
                  ++lSGG + R+ + r + +  ++l++DE T  LD  ++++  e+l++   + +vi H    i + a  i  le+ ++v   G y++ +++
  MMETSP1174-20130828|15067_1 522 SQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVLVISHDRYFIsQVATTICALEDKELVMYgGDYRHYMEN 611
                  68*******************************************************655551558899999998887652678888876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.7e-08   6.2e-06       3      49 ..      72     118 ..      70     173 .. 0.76
   2 !   40.9   0.0     5e-13   3.2e-11     134     215 ..     225     304 ..     202     330 .. 0.85
   3 !   13.0   0.0   0.00017     0.011       4      47 ..     408     451 ..     405     472 .. 0.85
   4 !   31.7   0.0   3.2e-10   2.1e-08     136     231 ..     515     608 ..     468     627 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.7e-08
    TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                  ++ ++++++g++ +l+d + e+++ + ++l+G  GcGkst+++ ln 
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNG 118
                  678999***************************************95 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 5e-13
    TIGR00972 134 vkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaf 215
                  + d++++s  s sGG + r+ +++ l  eP++lLlDePt  LD +++e +e+++++Lk  + iviv h+ ++   v  k++ 
  MMETSP1174-20130828|15067_1 225 ILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK--IPIVIVSHDREFLDNVCTKIVD 304
                  77999999*************************************************7..789*****99988888777665 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 0.00017
    TIGR00972   4 vknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                    +++  y   +  +++ l ++ ++ +a++Gp G+Gkstl+r +
  MMETSP1174-20130828|15067_1 408 LDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRII 451
                  566777899999999999***********************986 PP

  == domain 4    score: 31.7 bits;  conditional E-value: 3.2e-10
    TIGR00972 136 dklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqif 231
                  d+++k+  +LsGG + r++++r + +  ++l+lDePt  LD  a e +ee +q+      ++++ h+  + ++v+ ++  + + elv +g   + +
  MMETSP1174-20130828|15067_1 515 DDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDG--SVLVISHDRYFISQVATTICALEDKELVMYGGDYRHY 608
                  88999999********************************************98766..588899**********999999999999887655544 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.7e-08   6.2e-06       3      68 ..      72     135 ..      70     165 .. 0.88
   2 !   28.4   0.0   4.1e-09   2.6e-07     116     210 ..     211     304 ..     198     309 .. 0.82
   3 !   24.4   0.0   6.9e-08   4.5e-06       2      62 ..     406     464 ..     405     482 .. 0.88
   4 !   31.3   0.0   5.3e-10   3.4e-08     135     214 ..     520     596 ..     498     598 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 9.7e-08
    TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdlt 68 
                  ++++vs ++   +   l++ t ++ +G+ v lvG  G+Gkst++k++ g   p  G++  s  dl 
  MMETSP1174-20130828|15067_1  72 RMDKVSISFG-NH-DVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLR 135
                  5677777763.33.47******************************************99888774 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 4.1e-09
    TIGR00960 116 eervsaalekvGlk..dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvlt 210
                  + +v + ++++G++  d a++    +sgG + r+++++ ++++P++ll dePt  ld e  + + ++   +n + + +++ +hd++++++   +++ 
  MMETSP1174-20130828|15067_1 211 DAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENF---LNDLKIPIVIVSHDREFLDNVCTKIVD 304
                  5677788888886533777888899********************************9865544444...46777999***********99988876 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 6.9e-08
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirv 62 
                  + +++v++ y g++   ++n+ + +e  + + + G+ GaGkstl+++il  e p++G   +
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYDGSTL--FENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL 464
                  7899*********98..9********99999999***********************9776 PP

  == domain 4    score: 31.3 bits;  conditional E-value: 5.3e-10
    TIGR00960 135 lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                     qlsgGe+ rva++r ++   +ll+ dePt  ld    +++le  e +++    vlv +hd+ ++++    +  l++ 
  MMETSP1174-20130828|15067_1 520 KISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPA-KEMLE--EALQHYDGSVLVISHDRYFISQVATTICALEDK 596
                  5579********************************865.55554..566677779**************9999999875 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   5.5e-08   3.5e-06     484     543 ..      76     132 ..      49     140 .. 0.80
   2 !   25.8   0.0     1e-08   6.4e-07     578     675 ..     196     293 ..     182     309 .. 0.88
   3 !   20.1   0.0   5.5e-07   3.6e-05     494     541 ..     418     465 ..     386     475 .. 0.82
   4 !   36.4   0.0   6.4e-12   4.1e-10     610     704 ..     516     612 ..     511     617 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5.5e-08
    TIGR00958 484 VsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgk 543
                  Vs s+    ++ vl+d t+ ++ G+ v lVG +G GKSt++ +l+    P+ G+v+   +
  MMETSP1174-20130828|15067_1  76 VSISFG---NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSV 132
                  555554...568*********************************999999999975555 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1e-08
    TIGR00958 578 GltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLs 675
                  G  + + +++ a +  a++++ + ++   +  +     s  sgG k ri + + L+++P +L+LDe t  LD e+ + l++  +  + +++++ h  +
  MMETSP1174-20130828|15067_1 196 GELQLDADRLEAYSTDAKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKIPIVIVSHDRE 293
                  55567789999999999999999999999999999999******************************************999999999999999655 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 5.5e-07
    TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllD 541
                    ++++L + +ep + +a  GP+G GKSt   ++     P++G+ +l 
  MMETSP1174-20130828|15067_1 418 STLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  5689***************************************99985 PP

  == domain 4    score: 36.4 bits;  conditional E-value: 6.4e-12
    TIGR00958 610 evgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstv.ekadkilvlkkgsvv.elGthkqLmeke 704
                  +v++k sqlsgG k r+A+ R ++    +L+LDe t  LD   +++l+e  ++++ +vl+i h    + + a  i  l+  ++v   G++++ me++
  MMETSP1174-20130828|15067_1 516 DVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVLVISHDRYFIsQVATTICALEDKELVmYGGDYRHYMENK 612
                  578899********************************************************96555516678899998876551567888888875 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.5e-08   1.6e-06     317     383 ..      71     135 ..      54     144 .. 0.86
   2 !   26.8   0.0   5.8e-09   3.7e-07     453     520 ..     234     298 ..     214     313 .. 0.87
   3 !   17.5   0.0   4.1e-06   0.00026     312     377 ..     401     464 ..     381     480 .. 0.80
   4 !   36.4   0.0   7.7e-12   4.9e-10     448     536 ..     517     603 ..     504     609 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.5e-08
    TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlk 383
                  l++++vs+    +++++l++ + ++++G+ ++++G+ g Gks+++++l G ++p  G v   ++dl+
  MMETSP1174-20130828|15067_1  71 LRMDKVSIS--FGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLR 135
                  555666554..46778*****************************************9987777775 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 5.8e-09
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv 520
                  ++ sgG + Ri+L + l  +P +++LDeP   LD e    l + l++lk   i +v+++h  + l+ v
  MMETSP1174-20130828|15067_1 234 SSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDREFLDNV 298
                  679******************************************9997...5678888877777655 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 4.1e-06
    TIGR01842 312 epegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl 377
                   +e  +++++v+     +  + ++++ + +++ + +a +Gp g+Gks+L r+++    p++G+  l
  MMETSP1174-20130828|15067_1 401 MVEEVVDLDEVTHGY--DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL 464
                  445555555555444..4446899*******************************99999998776 PP

  == domain 4    score: 36.4 bits;  conditional E-value: 7.7e-12
    TIGR01842 448 igegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsll.elvdkilvlkdGalkafGe 536
                  + ++ ++LsgG + R+aL R +     l+vLDeP   LD      l +al++      +v+vi+h    + +++  i  l+d +l ++G 
  MMETSP1174-20130828|15067_1 517 VNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY---DGSVLVISHDRYFIsQVATTICALEDKELVMYGG 603
                  5667789******************************************9875...6899999996665516668899*********995 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.6e-16   2.3e-14      23     222 ..      82     303 ..      70     312 .. 0.78
   2 !   19.3   0.0   2.1e-06   0.00014      25      69 ..     419     463 ..     406     478 .. 0.90
   3 !   33.5   0.0   9.9e-11   6.3e-09     116     230 ..     489     599 ..     469     611 .. 0.86

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 3.6e-16
    TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlak..l......drkqrkafrrdvqlvfqdsisavnprksvreiige....P......lrhl.......tsldeserkariaellelvelr.sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvl 222
                   + vl++   ++++G  v+l+G  G+Gkst+ ++l G   P  G+v    +dl    l      d +  +++r ++  vf ++   +   k+ ++ + e    P      ++ l        +l++    a++ +++++++++  ++++   + +sGG   ri +++ l  eP++++lde    ldl      +e l+++ ++  + +++++hd +  ++++ +++
  MMETSP1174-20130828|15067_1  82 NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMafLrqefsdDLDPSRSLREELLSVFTEANQVLEKLKATEQRLEEtqddPaamqeaIEALgelqldaDRLEAYSTDAKVDKIMDQMGFSiLDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES----VEWLENFLNDLKIPIVIVSHDREFLDNVCTKIV 303
                  678*******************************************9999998542232222223345799************9999988887776654222212211114544111111134555667899*********983589999***********************************9865....566666666667999**************9987 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.1e-06
    TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                  ++++n+ l +e    +a+lG  GaGkstl r++l  e P++G+ +
  MMETSP1174-20130828|15067_1 419 TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCT 463
                  56789999999999****************************875 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 9.9e-11
    TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiv 230
                    l++   ++  + i +ll +  ++ ++++k+ +qlsGG   r++++r +    +l+vlde    ld+  +    e+l++  q+   ++l+i+hd   + ++a  +  l++ ++v
  MMETSP1174-20130828|15067_1 489 ATLEKAAVTQTYNEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK----EMLEEALQHYDGSVLVISHDRYFISQVATTICALEDKELV 599
                  5566666677788999***************************************************9876....56666666777799**************999999987776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.2e-08   5.9e-06     337     407 ..      70     137 ..      45     197 .. 0.79
   2 !   22.9   0.0     1e-07   6.5e-06     476     522 ..     235     281 ..     196     292 .. 0.87
   3 !   26.0   0.0   1.1e-08   7.2e-07     337     400 ..     405     465 ..     391     488 .. 0.85
   4 !   31.1   0.0   3.3e-10   2.1e-08     473     556 ..     520     602 ..     493     613 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.2e-08
    TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlrel 407
                   +++++v+ ++    ++ +l++   +vr+G++v lvG  G Gkst++++l     P  G +    vdlr +
  MMETSP1174-20130828|15067_1  70 SLRMDKVSISFG---NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMA 137
                  456677777765...4569******************************************9999999853 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1e-07
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel 522
                  ++sGG k ri +++ +l++ +iLLLde t+ Ld es + +++ l+ l
  MMETSP1174-20130828|15067_1 235 SFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL 281
                  68**********************************98888777766 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 1.1e-08
    TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailld 400
                   + ++ev+  y   +    +++l l v+p +++a+ GP GaGkstl++++l    P++G+  l+
  MMETSP1174-20130828|15067_1 405 VVDLDEVTHGYDGST---LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  567777877777655...78999************************************98875 PP

  == domain 4    score: 31.1 bits;  conditional E-value: 3.3e-10
    TIGR02204 473 rgvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah.rLatvlkadrivvldkGriveqG 556
                  +  +LsGG k r+a++r +l  a++L+Lde t+ Ld  + +++++al++   +   lvi+h r    + a  i  l++ ++v  G
  MMETSP1174-20130828|15067_1 520 KISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHdRYFISQVATTICALEDKELVMYG 602
                  5568*******************************************975..678999999555555678899999999998876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.7e-09   1.8e-07       1      64 [.      71     134 ..      71     144 .. 0.92
   2 !   22.2   0.0   2.7e-07   1.7e-05     118     201 ..     223     301 ..     196     321 .. 0.79
   3 !   47.8   0.0     4e-15   2.5e-13       3     214 ..     408     602 ..     406     616 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.7e-09
    TIGR03410   1 levenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegedi 64 
                  l+++++++++g+  vl+d + ev++g+ v ++G ng Gk+t++k l g ++   G +  ++ d+
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  678999*************************************************998777666 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.7e-07
    TIGR03410 118 FPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
                  F +l++ ++      sGG +  + +++ L++eP++llLDePt+ +    ++ +e+ +++l+    + i++v +  +f  ++  +
  MMETSP1174-20130828|15067_1 223 FSILDDAQS-SVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK----IPIVIVSHDREFLDNVCTK 301
                  677777655.45689******************************9999999999988875....6788888888887777665 PP

  == domain 3    score: 47.8 bits;  conditional E-value: 4e-15
    TIGR03410   3 venlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaeg 214
                  +++++  Y+ s++++++ l ve ++ +a lG ng+Gk+tl++ ++     ++G+ +l  + +            + y  q +    +l  e+ +  +le+++ + + + +  ++  F    +  +++  +LsGG +  +a++R ++t  +ll+LDePt+ +     + +e+++    ++ d ++l++ +   f  ++a +++ le  e+v+ g
  MMETSP1174-20130828|15067_1 408 LDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK-V-----------SVNYFAQNQA--DELVLEDTVLATLEKAAVTqTYNEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEAL----QHYDGSVLVISHDRYFISQVATTICALEDKELVMYG 602
                  68999*************************************************998543.2...........3566666553..5666666666666655543134445677888999999999**********************************99866555555555....5567799999999**************999888765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-05     0.002       2      40 ..      92     130 ..      91     146 .. 0.87
   2 !   30.9   0.0   6.8e-10   4.4e-08      92     191 ..     212     310 ..     165     344 .. 0.75
   3 !   19.7   0.0   1.8e-06   0.00012       3      42 ..     428     467 ..     426     477 .. 0.85
   4 !   33.6   0.0   1.1e-10   6.8e-09     108     186 ..     518     593 ..     491     604 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.1e-05
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkva 40 
                  +v +G+ +gl+G nG Gk+t+++ + g i++  G v  +
  MMETSP1174-20130828|15067_1  92 EVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKS 130
                  5789**************************999998655 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.8e-10
    TIGR03771  92 aavadalervkltel..adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                  a v++ ++++ ++ l  a+ +v  +sGG + r+ +++ l  +p++llldep   ldl s e l +++++l      i++++hd     ++c ++v   g + 
  MMETSP1174-20130828|15067_1 212 AKVDKIMDQMGFSILddAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDREFLDNVCTKIVDTMGGIT 310
                  557777777776666225679*********************************************99995...689999***9999999999997777665 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 1.8e-06
    TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                  v++ + +++lGpnGaGk+tl+r il   ++++G+  ++ k
  MMETSP1174-20130828|15067_1 428 VEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK 467
                  5667889*******************99999999887766 PP

  == domain 4    score: 33.6 bits;  conditional E-value: 1.1e-10
    TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll 186
                  ++ + +lsGG++ rv ++r + +  +ll+ldep   ld+p++e+l e +++    + ++l+ +hd     +++  ++ l
  MMETSP1174-20130828|15067_1 518 NKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY---DGSVLVISHDRYFISQVATTICAL 593
                  789******************************************9987765...557888899987777777777665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.9e-06   0.00031      17      58 ..      89     130 ..      71     161 .. 0.82
   2 !   27.5   0.0   7.1e-09   4.6e-07     106     200 ..     211     303 ..     196     312 .. 0.81
   3 !   46.9   0.0     8e-15   5.2e-13       2     205 ..     407     596 ..     406     602 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.9e-06
    TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvn 58 
                     +v +G+rv ++G  G Gkst+++++ G + p  G++   
  MMETSP1174-20130828|15067_1  89 ATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKS 130
                  456899****************************99998644 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 7.1e-09
    TIGR01277 106 kekvedvarqvGia..dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvv 200
                    kv+++  q+G +  d  +    ++sGG + r+ l++ l++e  illldep   ld     e +  +++  ++ k+ +++v+h+ + + ++ +++v
  MMETSP1174-20130828|15067_1 211 DAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDL----ESVEWLENFLNDLKIPIVIVSHDREFLDNVCTKIV 303
                  56899999999965114455567899**************************999985....566677888899999*******9998888888876 PP

  == domain 3    score: 46.9 bits;  conditional E-value: 8e-15
    TIGR01277   2 klddviyeyk..hlplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedva.rqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedG 205
                   ld+v++ y+  +l+ ++ l ve  +r+a lG+ GaGkstl+ +i   + p +G+ ++  k           vs+ +  +n    l +++ +   l+ +  ++    ++++++  + +  +d +++   +lsGG++ rval+r ++ +  +l+ldep   ld    +eml   ++  ++ + ++l+++h+   + ++a+ +  +ed 
  MMETSP1174-20130828|15067_1 407 DLDEVTHGYDgsTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK-----------VSVNYFAQNQADELVLEDTVLATLEKAA-VTQT-YNEIRALLgQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPA-KEML---EEALQHYDGSVLVISHDRYFISQVATTICALEDK 596
                  578888776511555567789*********************************9988655...........5555666666666766666555554432.2222.245555540555668999999***********************************765.6887...577788899999****999999999999888876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.6e-07   1.7e-05     470     534 ..      67     130 ..      50     143 .. 0.85
   2 !   24.1   0.0   3.9e-08   2.5e-06     588     674 ..     212     297 ..     196     321 .. 0.78
   3 !   50.5   0.0     4e-16   2.5e-14     474     697 ..     406     610 ..     397     614 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.6e-07
    TIGR01193 470 lngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeilln 534
                     ++++++vs s+G +++vled + ++++ +++ lvG  G Gkst++k+l +   ++ G++  +
  MMETSP1174-20130828|15067_1  67 GMVSLRMDKVSISFG-NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKS 130
                  457899*********.689********************************98888888877655 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 3.9e-08
    TIGR01193 588 aeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakk 674
                  a +++ ++++      +  ++ ss sgG k r+ l++ ll + ++l+lde t +ldl      +en+l+  +  i+ v+h  +  ++
  MMETSP1174-20130828|15067_1 212 AKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLE-SVEWLENFLNDLKIPIVIVSHDREFLDN 297
                  56666677777777778888999*********************************75.4567788887767888889986665544 PP

  == domain 3    score: 50.5 bits;  conditional E-value: 4e-16
    TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGkiie.qGshkellk 697
                  +++++v++ y  gs ++e++ l ++ +++i+ +G  G+Gkstl +++++   +++G+ +l++k            ++ny  q+    +  +le+ +l     ++ e+   +    ei++ + ++      ++ ++ s++sgG k r+al+r +l+++++l+lde t +ld+   k ++e+ l+  d +++ ++h r  +++ +  i +l++ +++   G++++ ++
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYD-GSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPK-----------VSVNYFAQNQA--DELVLEDTVL-----ATLEKAAVTQTYNEIRALLGQFLF-KGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDI-PAKEMLEEALQHYDGSVLVISHdRYFISQVATTICALEDKELVMyGGDYRHYME 610
                  56677776665.78999********************************************96...........47999999864..4455555555.....555555555667899999999865.356889999**********************************6.668899999999999999999978999**********98876651566776665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     5e-07   3.2e-05       2      47 ..      72     117 ..      71     164 .. 0.93
   2 !   25.5   0.0   2.3e-08   1.5e-06     130     217 ..     217     302 ..     192     310 .. 0.83
   3 !   23.4   0.0   9.7e-08   6.2e-06       1      60 [.     406     465 ..     406     482 .. 0.88
   4 !   27.4   0.0   6.1e-09   3.9e-07     103     225 ..     481     598 ..     468     617 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5e-07
    TIGR03005   2 risdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilm 47 
                  r+++v+  fg+  vl+++  ev +G++v l+G  G Gkst+++il 
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILN 117
                  67889999************************************95 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2.3e-08
    TIGR03005 130 lldmvGla..dkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrv 217
                  ++d +G++  d a++  + +sGG k r+ +++ l  +p++ll+de+t  ld e ve + n l +l    ++ +++v+h+  f  +++ ++
  MMETSP1174-20130828|15067_1 217 IMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL----KIPIVIVSHDREFLDNVCTKI 302
                  5555554422777888899***********************************99988888776....789999999999988877665 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 9.7e-08
    TIGR03005   1 vrisdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikve 60 
                  v++++vt+ ++  t++++l l v++ +++a +Gp G+Gkst++ri++  e+ +eG+  + 
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLG 465
                  568899*************************************************98874 PP

  == domain 4    score: 27.4 bits;  conditional E-value: 6.1e-09
    TIGR03005 103 tvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki 225
                   vl++ ++a +    v+++  e ra+ l +++  +d  ++  +qlsGG+k rva++r +    ++l++de+t  ld    +e+l    +  +  d ++l+++h+  f  ++a  ++ ++   +
  MMETSP1174-20130828|15067_1 481 LVLEDTVLATLEKAAVTQTYNEIRAL-LGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPA-KEML---EEALQHYDGSVLVISHDRYFISQVATTICALEDKEL 598
                  58899999999999999999999997.67888899999999****************999999999**********654.4444...344456788999999999999999999998765554 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.2e-08   7.5e-07       7      72 ..      69     134 ..      63     139 .. 0.92
   2 !   21.3   0.0     4e-07   2.6e-05     129     201 ..     226     293 ..     197     307 .. 0.74
   3 !   47.5   0.0   4.3e-15   2.8e-13       9     240 ..     406     624 ..     398     643 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.2e-08
    TIGR03258   7 sGvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdl 72 
                    ++++++++++g + vl+d + e+ +G+ + l+G  G+Gk+t+++++ G + +d G ++ +  dl
  MMETSP1174-20130828|15067_1  69 VSLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  5689****************************************************9999888876 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 4e-07
    TIGR03258 129 sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd 201
                   d a+   + +sGG + r+ l++ l  +p++llldep   ld +  + + + l+    +l ++ +++v+hdr+
  MMETSP1174-20130828|15067_1 226 LDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLN----DL-KIPIVIVSHDRE 293
                  36677778899******************************9765444444333....33.456888999986 PP

  == domain 3    score: 47.5 bits;  conditional E-value: 4.3e-15
    TIGR03258   9 vvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqs..kaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly..dap..adrfvaeyl 240
                  v l++++  y++ +++++l l +e+ + +a lG+ G+Gk+tl+r++     ++ G+  ++          k ++    qn a    l +e+ v   l     +    +i   + +    +  +d  ++  +qlsGG + rval+r +    ++l+ldep   ld   ++ + e l+       + +vl+++hdr     +a  i  + + +l+ +G   + y  ++p  ad+  a+++
  MMETSP1174-20130828|15067_1 406 VDLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGP---------KVSVNYFAQNQA--DELVLEDTVLATLEKAAVTqtYNEIRALLGQ---FLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY-----DGSVLVISHDRYFISQVATTICALEDKELVMYGGDYRHYmeNKPeiADKVEARFV 624
                  678999999***************************************9999999988774.........567778889988..5788899998887644443004444444444...445688899999******************999*************99987777666544.....5689999****99999999999999999998887666552222333455556654 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   8.6e-10   5.5e-08       2      52 ..      71     121 ..      70     142 .. 0.89
   2 !   23.5   0.0   5.9e-08   3.8e-06     104     212 ..     197     303 ..     183     311 .. 0.80
   3 !   16.0   0.0   1.1e-05   0.00069       3      47 ..     407     451 ..     405     457 .. 0.93
   4 !   27.4   0.0   3.6e-09   2.3e-07     381     480 ..     501     604 ..     482     619 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 8.6e-10
    TIGR02633   2 lemkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyp 52 
                  l+m ++  +fg+   l++ + ++r+G+ v+l G nG+Gkst+mk+l g  p
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIP 121
                  78999*****************************************99666 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 5.9e-08
    TIGR02633 104 eitlkGglmdydamvlrakellrelkldasnvtr.pvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtis 212
                  e+ l+  +++      ++++++ ++  ++ ++++  vs + +G +  + ++k l ++ ++l+ldep+  l  + +e l + ++dlk   +  v +sh  e ++ v+ +i 
  MMETSP1174-20130828|15067_1 197 ELQLDADRLEAYSTDAKVDKIMDQMGFSILDDAQsSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDREFLDNVCTKIV 303
                  56666666666667778888999998888777652589999999999999999999999999999999999999999999999998...677888999888888888775 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.1e-05
    TIGR02633   3 emkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvl 47 
                  ++ +++  ++g + ++n++l +++ + +++ G nGaGkstl++++
  MMETSP1174-20130828|15067_1 407 DLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRII 451
                  67889999**********************************996 PP

  == domain 4    score: 27.4 bits;  conditional E-value: 3.6e-09
    TIGR02633 381 kaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvs.......selaevlGlsdrvlvigeGk 480
                  + i++ + ++  k  + +  i++lsGG++ +  l++++l+  ++l+ldept  +d+ ak  +   +    +   +++v+s          + +  l d+ lv+  G 
  MMETSP1174-20130828|15067_1 501 NEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEAL---QHYDGSVLVIShdryfisQVATTICALEDKELVMYGGD 604
                  45667777777888888899***************************************7655444...44444445544111111033445556677777776665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.7e-08   4.3e-06       1      49 [.      71     119 ..      71     136 .. 0.92
   2 !   28.0   0.0   4.3e-09   2.8e-07     114     218 ..     205     306 ..     186     328 .. 0.78
   3 !   18.4   0.0   3.9e-06   0.00025      11      51 ..     416     456 ..     406     480 .. 0.84
   4 !   26.3   0.0   1.5e-08   9.4e-07     144     215 ..     523     591 ..     466     612 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.7e-08
    TIGR01978   1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                  L++ ++++s  ++++L++ + ev++G+ + ++G+nG Gkst++k+l g+
  MMETSP1174-20130828|15067_1  71 LRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGD 119
                  5677899999************************************997 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.3e-09
    TIGR01978 114 ldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvl 218
                  l++ +   ++++ ++++ ++      s  + fsGG k r  + +++l eP++ +LDe    lD++++  + + +n+l+     ++i++h +++l+++  + v  +
  MMETSP1174-20130828|15067_1 205 LEAYSTDAKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDREFLDNVCTKIVDTM 306
                  5555555566666666666665555666678***************************************99999987...569***********9988877654 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 3.9e-06
    TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghek 51 
                  +  ++ ++l l v++ +  a +GpnG+GkstL +++  +e+
  MMETSP1174-20130828|15067_1 416 DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEA 456
                  6677889999**************************98875 PP

  == domain 4    score: 26.3 bits;  conditional E-value: 1.5e-08
    TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvv 215
                    sGGek r  + +++l   +l +LDe    lD+ a  ++ e ++++   + ++l+i+h + ++++++ +  
  MMETSP1174-20130828|15067_1 523 QLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY---DGSVLVISHDRYFISQVATTIC 591
                  479*************9999*****************9999988877...679*******999998875543 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.3e-07   1.5e-05       2      60 ..      72     128 ..      27     138 .. 0.84
   2 !   32.9   0.0   8.8e-11   5.6e-09     419     498 ..     224     302 ..     189     310 .. 0.80
   3 !    8.0   0.0     0.003      0.19       2      48 ..     407     453 ..     406     465 .. 0.83
   4 !   31.8   0.0   1.9e-10   1.2e-08     167     253 ..     522     604 ..     477     637 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.3e-07
    TIGR03269   2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                  +++++  +f +  vl++   e+  G+ +G++G  G+Gks ++++l G  + +p+ G +i
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNG--DIPPDYGDVI 128
                  67788888888888888888888888888888888888888888888..4567777666 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 8.8e-11
    TIGR03269 419 eildklp...delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdra 498
                  +ild      + +s G + r+ l+++l++ep+i++ldept  +d  + v   e + +  ++l+   vivshd +f+ +vc ++
  MMETSP1174-20130828|15067_1 224 SILDDAQssvSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES-V---EWLENFLNDLKIPIVIVSHDREFLDNVCTKI 302
                  5666554111467899***************************9543.3...34445557899999**************875 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.003
    TIGR03269   2 evenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrG 48 
                  +++++t+ +dg + ++n+ l +e  + +  lG  GaGks l++++  
  MMETSP1174-20130828|15067_1 407 DLDEVTHGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILD 453
                  68999999999999999999999999999999999999999988743 PP

  == domain 4    score: 31.8 bits;  conditional E-value: 1.9e-10
    TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGep 253
                   +lsGGek rv l r +     ll+ dept  ld  +     e+l+ea +++d s+++ sh    i+++++    le+ e+v+ G  
  MMETSP1174-20130828|15067_1 522 SQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK----EMLEEALQHYDGSVLVISHDRYFISQVATTICALEDKELVMYGGD 604
                  46777777777777777777777777777777776554....455666667777777777777777777777777777777777654 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.6e-08   1.7e-06     330     402 ..      67     139 ..      49     145 .. 0.79
   2 !   23.7   0.0   5.2e-08   3.4e-06     434     516 ..     199     281 ..     187     291 .. 0.90
   3 !   41.2   0.0   2.6e-13   1.7e-11     328     550 ..     402     602 ..     396     613 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.6e-08
    TIGR02203 330 Gkvefr..nvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkL 402
                  G v++r  +v++ ++  + ++l++   +v++G++v lvG  G Gkst++++l   + pd G+++   vdl+   L
  MMETSP1174-20130828|15067_1  67 GMVSLRmdKVSISFG--NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMAFL 139
                  556555115566665..5679******************************************988887765444 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 5.2e-08
    TIGR02203 434 evdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl 516
                  ++d +++e+  ++a + +++d++   +  +  +  s  sGG + R+ +++ ll++  iL+LDe t  LD es   + + L+ l
  MMETSP1174-20130828|15067_1 199 QLDADRLEAYSTDAKVDKIMDQMGFSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL 281
                  778889999999**************9999******************************************87777766665 PP

  == domain 3    score: 41.2 bits;  conditional E-value: 2.6e-13
    TIGR02203 328 vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah.RLstiekaDrivvlddGkiverG 550
                  v+  v++ +vt+ y g     ++++ l ve+ +++a+ G+ G+Gkstl +++     p++G   l  +           + +a+   d ++ +dt+ + +  ++ ++ + +e+++      l +++ k       +v ++ s+LsGG + R+a++R +l  a +L+LDe t  LD  +   + +aL++   +   lvi+h R    + a  i  l+d ++v  G
  MMETSP1174-20130828|15067_1 402 VEEVVDLDEVTHGYDG--STLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKVSV--------NYFAQNQADELVLEDTVLATLEKAAVTQ-TYNEIRAL-----LGQFLFKG-----DDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHdRYFISQVATTICALEDKELVMYG 602
                  6667888888888865..56799***************************************999655433........4567777788889******999999844.45667644.....55565443.....35778999*********************************************96..56799***9444444668899999998888765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.1e-13   7.1e-12      18     213 ..      83     304 ..      70     310 .. 0.75
   2 ?    5.7   0.0     0.033       2.1      20      60 ..     420     460 ..     405     477 .. 0.77
   3 !   40.2   0.0   9.1e-13   5.8e-11     113     219 ..     494     598 ..     467     599 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.1e-13
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgaseke........lvqvrrkiGyifqahn.llesltaeqnvrmalelkeklsakeakakaeelleavglee.........................rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivk 213
                  + vl d   e+++g+ v l G+ G+Gk t++ ++ g      G++   + +l+ a  ++           +r ++  +f + n +le l a++     + l+e+    +a+++a e l ++ l+                            +   + +sgG k r+ +++ l ++P+++l dePt  ld +s    ve l++  ++    i++v hd   ld v+ +iv 
  MMETSP1174-20130828|15067_1  83 HDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMAFLRQefsddldpSRSLREELLSVFTEANqVLEKLKATE-----QRLEETQDDPAAMQEAIEALGELQLDAdrleaystdakvdkimdqmgfsildDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES----VEWLENFLNDLKIPIVIVSHDREFLDnVCTKIVD 304
                  579*******************************99888888877666666444322220001111134688888888877763566666653.....234444444455556666666666665666668888899999999999988888899999********************************988....7788888888899********9998648888886 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.033
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeG 60 
                  ++ ++ l +ep + + + Gp G+Gk tl+ +i    +  eG
  MMETSP1174-20130828|15067_1 420 LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEG 460
                  4567789999***9**************9998766666666 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 9.1e-13
    TIGR02982 113 lsakeakakaeelleavgl.eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkmedGkl 219
                   + +++ ++ ++ll + ++ ++ +++k ++lsgG k rva++r + +  +l++ dePt  ld  + +    +l++  ++   ++l++ hd   i +va  i  +ed +l
  MMETSP1174-20130828|15067_1 494 AAVTQTYNEIRALLGQFLFkGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKE----MLEEALQHYDGSVLVISHDRYfISQVATTICALEDKEL 598
                  34566677778888776652789***************************************98764....555666667889*******864889********99765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.4e-09   1.5e-07     446     523 ..      59     136 ..      40     170 .. 0.83
   2 !   24.3   0.0     3e-08   1.9e-06     592     650 ..     234     290 ..     189     324 .. 0.85
   3 !   12.2   0.0   0.00013    0.0083     457     513 ..     407     461 ..     397     472 .. 0.86
   4 !   26.5   0.0   6.1e-09   3.9e-07     586     681 ..     516     611 ..     510     620 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.4e-09
    TIGR01846 446 kaalpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlal 523
                  ++a ++  G ++++  +   +  + +vl++ + ++++G+ +G+vG  G+Gkst+ k+l     P+ G v+   vdl +
  MMETSP1174-20130828|15067_1  59 RIADTQQPGMVSLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRM 136
                  45666677877777766677777889********************************************99999976 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 3e-08
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiah 650
                  +++sGG + ri l++ l+++P il+lde t  ld es + + + l+++     ++i++h
  MMETSP1174-20130828|15067_1 234 SSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKI--PIVIVSH 290
                  578**********************************9999988887643..3455555 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00013
    TIGR01846 457 efenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGr 513
                  ++++++  y  d +++++nl l +++ + i   Gp G+Gkstl +++     P++G 
  MMETSP1174-20130828|15067_1 407 DLDEVTHGY--DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGT 461
                  566666666..567899*****************************99999999886 PP

  == domain 4    score: 26.5 bits;  conditional E-value: 6.1e-09
    TIGR01846 586 evgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiah.rlstvraadrilvlekGk.ivesGkheellak 681
                  +v+ k ++lsGG + r+al+r +++   +l+lde t  ld  + +++ + l++   +  v++i+h r    + a  i  le+ + ++  G +   +++
  MMETSP1174-20130828|15067_1 516 DVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHY--DGSVLVISHdRYFISQVATTICALEDKElVMYGGDYRHYMEN 611
                  5788899********************************************985..445667777255555667889999876614555667666665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   7.3e-07   4.7e-05      21      66 ..      83     128 ..      76     142 .. 0.89
   2 !   24.2   0.0   6.4e-08   4.1e-06     147     220 ..     233     303 ..     213     306 .. 0.86
   3 !   13.1   0.0   0.00016      0.01      24      66 ..     421     463 ..     411     483 .. 0.84
   4 !   25.6   0.0   2.5e-08   1.6e-06     148     216 ..     522     587 ..     477     594 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 7.3e-07
    TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66 
                   +vl++ + ev++G+ v l G+ G Gkst++k l ++  p+ g ++
  MMETSP1174-20130828|15067_1  83 HDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVI 128
                  5799******************************999999988876 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 6.4e-08
    TIGR02324 147 PatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrel 220
                   + fsGG k R+ +++ l+++  iLLLdePt  Ld    +   ++++++k   + ++ + hd+e  + v+++ +
  MMETSP1174-20130828|15067_1 233 VSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLK---IPIVIVSHDREFLDNVCTKIV 303
                  578*****************999***********9999988888888877...567778888888887777665 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00016
    TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66 
                  ++++ l ve  + +a+ G+ GaGkstl++ +  +  p+ g+ +
  MMETSP1174-20130828|15067_1 421 FENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCT 463
                  6889999999*********************999988888765 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 2.5e-08
    TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelva 216
                  +  sGGek Rv ++r ++++  +L+LdePt  Ld   +++  e ++   +   +++ i hd+   ++va
  MMETSP1174-20130828|15067_1 522 SQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQ---HYDGSVLVISHDRYFISQVA 587
                  678******************************9998864444443...34556667888876666555 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   6.8e-14   4.3e-12     421     640 ..      37     292 ..      19     297 .. 0.71
   2 !   17.3   0.0   4.3e-06   0.00027     464     500 ..     416     452 ..     391     477 .. 0.82
   3 !   20.4   0.0   4.8e-07   3.1e-05     581     640 ..     521     580 ..     485     585 .. 0.93

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 6.8e-14
    TIGR00954 421 rprveekesaeeesrkselvagrgkveaqdn....gikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvygglltkpeegklFyvPqrPY..m.slgtlRdqiiYPds.sedfker.........................glsdkdLeqiLeevkLedlleregg.........................wdavqdWk...dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                  +++ve    a e  r+  + agr ++ ++++     ++++++ +   + dvl e+ + ev+ G  + ++G nGcGKs +++il g++ P yg +     + ++ ++ q     +   ++lR+ ++   +  +++ e+                         g                                                 ++++ d +      sgG k Ri++ +++   P+  +LDE t+ + ++  + l + + +++i ++ vsh +
  MMETSP1174-20130828|15067_1  37 ETEVEG--VAVERVREDRRPAGRVRIADTQQpgmvSLRMDKVSISFGNHDVL-EDATWEVRTGDRVGLVGANGCGKSTMMKILnGDIPPDYGDVIKSSVDLRMAFLRQEFSddLdPSRSLREELLSVFTeANQVLEKlkateqrleetqddpaamqeaiealG-----------------------ElqldadrleaystdakvdkimdqmgFSILDDAQssvSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLKIPIVIVSHDR 292
                  333332..2222255666666677777666544336899****999988876.899***************************7789*********************8541131356****99755441344455554445555555554444444444440.......................24444555555555666666666666777777651115679*****************************99999999999**********99965 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 4.3e-06
    TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                  +g+ l e+L + v+    +  +GPnG GKs lfRi+ 
  MMETSP1174-20130828|15067_1 416 DGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIIL 452
                  78999******************************85 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 4.8e-07
    TIGR00954 581 kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                     LsgGek R+a+ R++    +  vLDE t+ + +   + l e++++++ ++l +sh +
  MMETSP1174-20130828|15067_1 521 ISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYDGSVLVISHDR 580
                  568******************************************************975 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.1e-05    0.0046       1      34 [.     101     134 ..     101     141 .. 0.91
   2 !   28.9   0.0   1.9e-09   1.2e-07      80     162 ..     213     293 ..     198     309 .. 0.78
   3 !   34.9   0.1   2.9e-11   1.9e-09       2     191 ..     437     610 ..     436     660 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.1e-05
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedv 34 
                  l+G+ G+Gk+t++++l G   +d G ++ + +d+
  MMETSP1174-20130828|15067_1 101 LVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  68*************************9988886 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.9e-09
    TIGR01187  80 rvkeaLelv..qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqe 162
                  +v ++++ +   + + a++ +s +sGG + r+ l++ + ++P+iLLlDep   LD +  + +    +++ + l i +v+v hD+e
  MMETSP1174-20130828|15067_1 213 KVDKIMDQMgfSILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWL----ENFLNDLKIPIVIVSHDRE 293
                  44444443311344678999***********************************9877665....55666777999******87 PP

  == domain 3    score: 34.9 bits;  conditional E-value: 2.9e-11
    TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                  LGp G+Gk+tl+r++   e +++G   l+          k svn   q+ a    + +e+ v   L    v ++   + ++++L    +  +  ++k+sqlsGG + rval+r +    ++L+lDep   LD   ++ + + l   q+  G  v+++ hD+     ++  i  l++ +++  g     y e
  MMETSP1174-20130828|15067_1 437 LGPNGAGKSTLFRIILDKEAPNEGTCTLGP---------KVSVNYFAQNQA--DELVLEDTVLATLEKAAVTQTY--NEIRALLGQFLFkGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEAL---QHYDG-SVLVISHDRYFISQVATTICALEDKELVMYGGDYRHYME 610
                  9***********************999975.........456888888887..5777888888888766666554..4556667655441567899************************************99988776655...44445.456678887665555555555555555554444333332 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-06   0.00025       2      44 ..      87     129 ..      86     178 .. 0.89
   2 !   21.5   0.0   4.7e-07     3e-05      97     175 ..     219     292 ..     191     317 .. 0.76
   3 !   39.2   0.0   1.8e-12   1.2e-10       3     174 ..     423     579 ..     421     587 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.9e-06
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavil 44 
                  +d   e++ g+ + l+g  gcgkst++ ++ g   p  g vi 
  MMETSP1174-20130828|15067_1  87 EDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIK 129
                  677889**************************99999998875 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 4.7e-07
    TIGR01184  97 ehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                  +++ +  l + a+  ++ +sgg k r+ +++ l   p++llldep   ld  +     e l + +++ ++ +++v+hd 
  MMETSP1174-20130828|15067_1 219 DQMGFSILDD-AQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESV----EWLENFLNDLKIPIVIVSHDR 292
                  3344444444.4567889*******************************97544....455567789999999999995 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 1.8e-12
    TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  ++ l ++  + i+++g  g gkstl+ +i   e p +g+ +l        gp+  v +        l   + +  +++++  +++ +e r+++ + +      +  +k+++qlsgg k rva++r + +  +ll+ldep   ld  ++e l+e l     + + +vl+++hd
  MMETSP1174-20130828|15067_1 423 NLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL--------GPKVSVNYFAQNQADELVLEDTVLATLEKAAVTQTYNEIRALLGQFL---FKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQ----HYDGSVLVISHD 579
                  66788889999****************************998........56666655555555666677777777888888888999999998765...4567889****************************************999998874....334455555555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.6e-05    0.0036      20      69 ..      85     134 ..      71     143 .. 0.89
   2 !   28.0   0.0   3.6e-09   2.3e-07     116     211 ..     209     302 ..     194     312 .. 0.81
   3 !    7.7   0.0    0.0052      0.33      22      62 ..     422     462 ..     405     468 .. 0.82
   4 !   25.0   0.0   2.9e-08   1.8e-06     109     237 ..     488     616 ..     468     624 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5.6e-05
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdl 69 
                   l++ +  v  g+ +g++ga g gkst+++ +n    p  g+vi   +dl
  MMETSP1174-20130828|15067_1  85 VLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDL 134
                  688999999*************************999*******999988 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3.6e-09
    TIGR02314 116 kikrkvtellalvgls..dkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdev 211
                    + kv++++  +g+s  d  +s  s +sgg k r+ +++ l  ep +ll de t  ld  +     e l +    l++ i++++h+ + + ++c ++
  MMETSP1174-20130828|15067_1 209 STDAKVDKIMDQMGFSilDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESV----EWLENFLNDLKIPIVIVSHDREFLDNVCTKI 302
                  456788888888887634666777899********************************8765....56666667799*****************986 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0052
    TIGR02314  22 dnvslfvpkgqifgvigasgagkstlircvnllekptsgav 62 
                  +n+ l v   + +  +g  gagkstl r +   e p +g+ 
  MMETSP1174-20130828|15067_1 422 ENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTC 462
                  6666766555556789**************999***99975 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 2.9e-08
    TIGR02314 109 lentpkekikrkvtellalvgl....sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpktela 237
                  l++  k  + +  +e+ al+g     +d  +   s+lsgg+k rva++r + +   +l+ de t  ld  +     e+l e  ++ + ++l+i+h+   + ++  ++  +++ el+  g     + + k e+a
  MMETSP1174-20130828|15067_1 488 LATLEKAAVTQTYNEIRALLGQflfkGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK----EMLEEALQHYDGSVLVISHDRYFISQVATTICALEDKELVMYGGDYRHYMENKPEIA 616
                  5556788899999999999994334478888899**********************************6554....6777888888999******************99999999987766555555555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.8e-07   1.1e-05       5      52 ..      82     129 ..      79     140 .. 0.88
   2 !   22.9   0.0   1.3e-07   8.4e-06     128     190 ..     234     292 ..     201     307 .. 0.78
   3 ?    6.8   0.0      0.01      0.66      12      48 ..     424     460 ..     416     474 .. 0.81
   4 !   21.1   0.0   4.9e-07   3.1e-05     127     215 ..     521     605 ..     481     664 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.8e-07
    TIGR01186   5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkili 52 
                   +  ++d+  e+  G+ + ++G  G+Gkst++++ln  i P  G ++ 
  MMETSP1174-20130828|15067_1  82 NHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIK 129
                  555678999**********************************99875 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.3e-07
    TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdl 190
                    +sGG + r+Gl + l +eP++ll+de+   ld    + l + l    ++l+  iv ++hd 
  MMETSP1174-20130828|15067_1 234 SSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFL----NDLKIPIVIVSHDR 292
                  578*******************************65555454444....45567899999994 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.01
    TIGR01186  12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaG 48 
                  + l +e  + i ++G+ G+Gkstl r++     P +G
  MMETSP1174-20130828|15067_1 424 LCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEG 460
                  556777788899**************99666566555 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 4.9e-07
    TIGR01186 127 PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPd 215
                    +lsGG + rv l r + +  +ll++de+   ld    +e+ +e +  q +++ +++ i+hd     +++  i  l++ e+v  G   
  MMETSP1174-20130828|15067_1 521 ISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDI-PAKEMLEEAL--Q-HYDGSVLVISHDRYFISQVATTICALEDKELVMYGGDY 605
                  579********************************5.5566666643..3.45678899**********************99988653 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     8e-05    0.0051      36      74 ..      81     119 ..      54     132 .. 0.81
   2 !   25.0   0.0   2.1e-08   1.4e-06     120     201 ..     192     270 ..     186     288 .. 0.80
   3 !   11.2   0.0   0.00032     0.021      39      78 ..     419     458 ..     400     478 .. 0.81
   4 !   21.3   0.0   2.8e-07   1.8e-05     162     200 ..     519     557 ..     493     600 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8e-05
    TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                  ++  +l++ + ++++G+ + ++G+ G GK+T++++l   
  MMETSP1174-20130828|15067_1  81 GNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGD 119
                  6778999****************************9865 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 2.1e-08
    TIGR00955 120 Lmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfs 201
                  +    +l+l+++  +  +  ++v+++++++g +   d        v + SgG + R+ l++ ll++P +L++DEPT  LD  s
  MMETSP1174-20130828|15067_1 192 IEALGELQLDADRLEAySTDAKVDKIMDQMGFSILDDAQSS----VSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES 270
                  55556677766555555888999******998877776655....668*******************************9666 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00032
    TIGR00955  39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekg 78 
                  +l +n +  +++ + +A lG+ GaGK+TL+ ++  +++ +
  MMETSP1174-20130828|15067_1 419 TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPN 458
                  667777777888899****************998887655 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 2.8e-07
    TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                   ++  lSgGe+ R+al+  +lt   lL++DEPT  LD  
  MMETSP1174-20130828|15067_1 519 KKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIP 557
                  45668*******************************965 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.6e-10     1e-08     336     507 ..      72     271 ..      43     290 .. 0.74
   2 !   30.6   0.0   4.7e-10     3e-08     325     528 ..     396     578 ..     388     612 .. 0.69

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.6e-10
    TIGR01192 336 efrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatv..tre.........slrksiatvfqdag.llnrsirenirlgredatdeevveaakaaaasdfiekrlkgydt.........lvg........ergnrlsggerqrlaiarailknapilvldeatsaldvete 507
                  ++ ++s  f n  + + d ++e+++g+ v +vg  g gk+t++ +l+    p+ g ++   vd+      +e         slr+ + +vf +a  +l++    + rl  ++   + + ea +a    ++  +rl++y t         ++g           + +sgg + r+ +++ +l++  il+lde t  ld+e+ 
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNH-DVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVIKSSVDLRMAflRQEfsddldpsrSLREELLSVFTEANqVLEKLKATEQRLEETQDDPAAMQEAIEALGELQLDADRLEAYSTdakvdkimdQMGfsilddaqSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESV 271
                  455788888886.56899*******************************************998643112212223333339***********97367777778889988887777777777777777777777777765332222111112111111112346789*******************************975 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 4.7e-10
    TIGR01192 325 arelknvkgavefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiah 528
                  a+ l+ v+  v++ ++++++  s+    ++ + +   + +a +gp gagk+tl  ++     p++g  ++   ++ +v+        a    d  +l+ ++   ++    + t +e+    +a    +f+ k   g    v ++ ++lsgge+ r+a++r +l  a +lvlde t  ld+ ++  + +a++    + + ++i+h
  MMETSP1174-20130828|15067_1 396 APRLNMVEEVVDLDEVTHGYDGST-LFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGP-KV-SVNYF------AQNQADELVLEDTVLATLEKAAVTQTYNEI----RA-LLGQFLFK---G--DDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQH--YDGSVLVISH 578
                  567888888999999999997765.57899999999999999999999999999999999999999887642.22.23333......333334444444444444333333344443....33.33445533...3..3478899***********************************998888888753..2344444444 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.9e-09   1.9e-07       4     193 ..      88     299 ..      85     309 .. 0.69
   2 ?    1.2   0.0      0.64        41       3      39 ..     422     458 ..     420     471 .. 0.80
   3 !   32.2   0.0   2.3e-10   1.4e-08     124     206 ..     522     600 ..     474     619 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.9e-09
    TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltkt.sGeilldgkelaal.........alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLe......eaeevlkkypfel...........sGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaela 193
                  d   ++++g  ++lvG+ G+Gks+  + + g ++++   + + ++ l+   l +          +lr +e+  ++ +  + ++ l + +++l et      +++  ++l   +l+a  Le      ++++++++  f +           sGG   R+ +   ll e+ +l+ DePt  lD+ +    ++ le++ ++  + i++++hD   + ++ 
  MMETSP1174-20130828|15067_1  88 DATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDViKSSVDLRMAFLRQEfsddldpsrSLR-EELLSVFTEANQVLEKLKATEQRLEETQDDPAAMQEAIEALGELQLDADRLEaystdaKVDKIMDQMGFSIlddaqssvssfSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES----VEWLENFLNDLKIPIVIVSHDREFLDNVC 299
                  6677899****************98888888777764332134444444433333556677775444.45556788888888888888888888876666665544444444444444432222125678999888853333333333339******************************865....5677788888999********87766655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.64
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldke 39 
                  +++ l +     +a++G  G+Gks+    il+  +++
  MMETSP1174-20130828|15067_1 422 ENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPN 458
                  5677777888889***********9988888766555 PP

  == domain 3    score: 32.2 bits;  conditional E-value: 2.3e-10
    TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkive 206
                   +lsGG   Rv +   +l+ a ll+ DePt  lD+ ++    ++lee  ++ + ++l+i+hD   ++++a  ++ +e+ ++v 
  MMETSP1174-20130828|15067_1 522 SQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAK----EMLEEALQHYDGSVLVISHDRYFISQVATTICALEDKELVM 600
                  59********************************9876....467788899999**********************9998885 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0019      0.12      40      79 ..      86     125 ..      68     163 .. 0.80
   2 !   23.9   0.0   6.2e-08   3.9e-06     142     226 ..     214     293 ..     203     313 .. 0.77
   3 ?    2.4   0.0      0.21        13      40      70 ..     421     451 ..     393     478 .. 0.81
   4 !   23.7   0.0   6.8e-08   4.3e-06     159     247 ..     518     602 ..     504     628 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0019
    TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrG 79 
                   +da+ +v+ G+ + l+G  G Gks++++ +ng  p   G
  MMETSP1174-20130828|15067_1  86 LEDATWEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYG 125
                  689999**************************96665555 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 6.2e-08
    TIGR03415 142 rkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdld 226
                   +++ +q+ +  l++ a+  v  +sGG + r+Gl++ +  e +ill+deP   ld    +     l ++ + lk  iv vshd +
  MMETSP1174-20130828|15067_1 214 VDKIMDQMGFSILDD-AQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVE----WLENFLNDLKIPIVIVSHDRE 293
                  455555555555555.5667899********************************64444....44567789999********65 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.21
    TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllrav 70 
                   ++  l ve  + + ++G  G+Gks+l+r +
  MMETSP1174-20130828|15067_1 421 FENLCLGVEPKDRIAFLGPNGAGKSTLFRII 451
                  56777888888888899************88 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 6.8e-08
    TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlg 247
                  +kk+ +lsGG + rv l+r + t a++l++deP   ld   ++ l + l     +    ++ +shd     ++ + i+ +e+  +v +g
  MMETSP1174-20130828|15067_1 518 NKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQ----HYDGSVLVISHDRYFISQVATTICALEDKELVMYG 602
                  7999**********************************888888877654....456789999***99999999999999999998776 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.2e-05    0.0052    1230    1264 ..      81     115 ..      63     125 .. 0.86
   2 !    9.8   0.0   0.00038     0.024     549     593 ..     236     279 ..     211     346 .. 0.66
   3 !   10.6   0.0   0.00021     0.014    1226    1266 ..     412     452 ..     391     472 .. 0.84
   4 !   15.1   0.0     1e-05   0.00064     548     594 ..     523     568 ..     504     635 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.2e-05
    TIGR01271 1230 agravlqdlsfsveagqrvgllgrtgsgkstllsa 1264
                   + + vl+d ++ v +g+rvgl+g  g+gkst++  
  MMETSP1174-20130828|15067_1   81 GNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKI 115 
                   45679**************************9875 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00038
    TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclc 593
                  +sgg + ri+l++ + ++ ++ lld p ++ld+ +  e +e+ l 
  MMETSP1174-20130828|15067_1 236 FSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLES-VEWLENFLN 279
                  56667777777777777777777777777776543.344444444 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00021
    TIGR01271 1226 kyteagravlqdlsfsveagqrvgllgrtgsgkstllsall 1266
                    +  +g +++++l + ve+ +r+ +lg  g+gkstl+  +l
  MMETSP1174-20130828|15067_1  412 THGYDGSTLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIIL 452 
                   445689******************************98877 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 1e-05
    TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifesclck 594
                   lsgg++ r++l+r +   a+l +ld p ++ld+   ke++e+ l +
  MMETSP1174-20130828|15067_1 523 QLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIP-AKEMLEEALQH 568
                  47888888888888888888888888888888875.46777776543 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013    0.0085    1960    1996 ..      91     127 ..      68     144 .. 0.86
   2 !   12.2   0.0   4.6e-05     0.003    2056    2142 ..     219     304 ..     200     323 .. 0.85
   3 !   21.2   0.0   9.4e-08     6e-06    1936    2112 ..     404     565 ..     400     593 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
    TIGR01257 1960 vgvrpgecfgllgvngagktttfkmltgdttvtsgda 1996
                     vr g+ +gl+g ng+gk+t +k+l gd     gd 
  MMETSP1174-20130828|15067_1   91 WEVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDV 127 
                   579**************************98888775 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.6e-05
    TIGR01257 2056 kslglslyadrl..agtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlai 2142
                   + +g+s+  d+     ++sgg k ++  +  l+  p ++lldept  +d ++   l n +  +   +  +v+ sh  e  + +ct++  
  MMETSP1174-20130828|15067_1  219 DQMGFSILDDAQssVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDL---KIPIVIVSHDREFLDNVCTKIVD 304 
                   567888887765115789************************************999988765...467999*************9864 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 9.4e-08
    TIGR01257 1936 dilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwnt 2112
                   +++ l+e+t+ y g+     + lc+gv p + + +lg ngagk+t f+++    +   g +t+  k           ++ y  q +a d+l+       l +  +   ++  +++     + l      ++     sgg+k +++ +  ++    l++ldept  +d  a+ ml ++
  MMETSP1174-20130828|15067_1  404 EVVDLDEVTHGYDGS--TLFENLCLGVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLGPKV----------SVNYFAQNQA-DELVLEDT--VLATLEKAAVTQTYNEIRALLGQFLFKGDDVNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEA 565 
                   578899999999996..5789******************************9999999999998774..........3445555544.55554333..3333333334444444555555555555556677788999999999999999999999999999999999999999765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.2e-05    0.0033       5      59 ..      72     128 ..      69     142 .. 0.85
   2 !   13.9   0.0   9.4e-05     0.006     136     197 ..     230     290 ..     208     304 .. 0.86
   3 !    9.4   0.0    0.0022      0.14       3      60 ..     405     464 ..     403     486 .. 0.85
   4 !    8.4   0.0    0.0047       0.3     138     184 ..     520     566 ..     493     603 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-05
    TIGR02323   5 evselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevt 59 
                  ++ ++s s+g++  ++  ++ ++ G+ +g+vG  G Gkst++k l + + +d G+v 
  MMETSP1174-20130828|15067_1  72 RMDKVSISFGNHDVLEdATWeVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVI 128
                  66777888888888876677799*******************************986 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 9.4e-05
    TIGR02323 136 rikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth 197
                  +   ++fsGG + r+ +++ l+ +p+++++ ept  l   sv+     l +++++l++ ++iv+h
  MMETSP1174-20130828|15067_1 230 QSSVSSFSGGWKMRIGLSKILLQEPNILLLdEPTNHLdlESVE----WLENFLNDLKIPIVIVSH 290
                  556789*********************9999***998433443....568889999999999998 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0022
    TIGR02323   3 llevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevty 60 
                  ++++ e+++ y +++ ++ + + + p + ++ +G  G+Gkstl+  +  + ++++G+ t 
  MMETSP1174-20130828|15067_1 405 VVDLDEVTHGYDGSTLFEnLCLgVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL 464
                  5677788899988888876777899*******************************9875 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.0047
    TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrgl 184
                  k +++sGG + r+ ++r ++t  +l+++ ept  l  + a+ +l  +l
  MMETSP1174-20130828|15067_1 520 KISQLSGGEKGRVALSRMMLTPANLLVLdEPTNHL-DIPAKEMLEEAL 566
                  56899****************99988887***887.455555555444 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-06   6.5e-05     363     399 ..      92     128 ..      69     145 .. 0.88
   2 !    7.5   0.0    0.0044      0.28     458     534 ..     224     296 ..     201     312 .. 0.84
   3 !   19.5   0.0     1e-06   6.6e-05     369     547 ..     433     598 ..     411     601 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1e-06
    TIGR01194 363 riasGelvyivGenGcGkstliklllGlyipqeGell 399
                   +  G+ v +vG nGcGkst++k+l G   p  G+++
  MMETSP1174-20130828|15067_1  92 EVRTGDRVGLVGANGCGKSTMMKILNGDIPPDYGDVI 128
                  6789************************999999986 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0044
    TIGR01194 458 kvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfe 534
                  ++ d + s+ +++s G + r+ l    l+e  +lllde +   d      + e++l dlk     i+++shd ++++
  MMETSP1174-20130828|15067_1 224 SILDDAQSSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVE-WLENFLNDLKI---PIVIVSHDREFLD 296
                  78888889999*****************************999976544.6799*****96...69******98875 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1e-06
    TIGR01194 369 lvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf..eladrlikladGkv 547
                   +  +G nG Gkstl +++l    p+eG   l G  vs        + f+   ad  +++d v     ++a++ q+ + ++ l  +   k  d n    ++ls G++ r+al    l    +l+lde +   d + k ++ e     l+    ++lvishd ryf  ++a  +  l d  +
  MMETSP1174-20130828|15067_1 433 RIAFLGPNGAGKSTLFRIILDKEAPNEGTCTL-GPKVSV-------NYFAQNQADELVLEDTVLA-TLEKAAVTQTYNEIRALLGQFLFKGDDVNKK-ISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEA----LQHYDGSVLVISHD-RYFisQVATTICALEDKEL 598
                  556689***********************999.677775.......4588889999999999984.4555666665556666655666777777776.88***********************************99876443....5667779******6.7775678888888877665 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00072     0.046    1246    1330 ..      38     114 ..      27     135 .. 0.70
   2 !    6.9   0.0    0.0029      0.18     761     880 ..     236     353 ..     229     376 .. 0.74
   3 !   25.1   0.0   9.3e-09   5.9e-07     660     857 ..     427     617 ..     410     658 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00072
    TIGR00957 1246 letnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltl 1330
                    e + vaver++e  +       +i +t+ p      g v +r   +    +   vl d + +++ g++vg+vg  g+gks++  
  MMETSP1174-20130828|15067_1   38 TEVEGVAVERVREDRRPA--GRVRIADTQQP------GMVSLRMDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMK 114 
                   444456777776654432..33445555544......677777777777777777999999999999999999999999999865 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0029
    TIGR00957 761 lsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgki..semgsyqelld.rdgafaeflrtyasaedeldaeddgvasvs 880
                  +sgg k r+ l++ +  + +i lld+p   +d       +e+ +           ++v+h   +l +v   iv + g i  s   +y   l+ ++  f  + +ty ++++  + e +++ s+ 
  MMETSP1174-20130828|15067_1 236 FSGGWKMRIGLSKILLQEPNILLLDEPTNHLDLESVEW-LENFLNDLK----IPIVIVSHDREFLDNVCTKIVDTMGGItySYDANYSRYLKlKKARFEAWKKTYDAQQKSIKEEMKWIKSNK 353
                  79999999999999999999999999999998765544.455554432....24578999999999998888866655522667888887773556688899999888888888888876654 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 9.3e-09
    TIGR00957 660 sipegalvavvgqvgcgkssllsallaemdkvegkval..kgsvayvpqqawiqndslrenilfgkaleekyykav.leacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviiv.lsdgk.isemgsyqelldrdgafae 857
                   +     +a +g+ g gks+l+  +l +    eg  +l  k sv y  q+   ++  l++ +l   +le+    ++  e  all +  +l  gd   + +k  +lsgg+k rv+l+r + + a++ +ld+p   +d   ak ++e+ +       + + ++++h   ++ qv   i  l d + +   g y++ ++ +  +a+
  MMETSP1174-20130828|15067_1 427 GVEPKDRIAFLGPNGAGKSTLFRIILDKEAPNEGTCTLgpKVSVNYFAQNQ-ADELVLEDTVLA--TLEKAAVTQTyNEIRALLGQ--FLFKGDD--VNKKISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIP-AKEMLEEALQHY----DGSVLVISHDRYFISQVATTICaLEDKElVMYGGDYRHYMENKPEIAD 617
                  5555567899*************************9996678999988753.456667777764..56666555551567789986..6888985..6789999*****************************99975.677777655432....233345567777777776555414444312333566666666655555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0021      0.13     699     811 ..      11     118 ..       3     136 .. 0.70
   2 ?    3.4   0.0     0.037       2.4     189     242 ..     218     268 ..     170     290 .. 0.79
   3 ?    0.5   0.0      0.29        18     780     810 ..     422     452 ..     323     474 .. 0.75
   4 !   11.6   0.0   0.00012    0.0078     207     287 ..     521     603 ..     505     616 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0021
    TIGR00956 699 kgeilvfkkgelkkakkkeees.eskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                   +++++  kg+++k++++e+ s ++k++++e   v+++ +  + + +v+   +    ++  + ++r    +v i+ ++  +L++ +  v+ G    L+Ga G Gk t++ +L +
  MMETSP1174-20130828|15067_1  11 DDDTVLSPKGKKNKKEEMEVVSmAEKETEVEGVAVERVREDRRPAGRVRIADT----QQPGMVSLR--MDKVSISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMMKILNG 118
                  55667777777776666655441444455555555444333333222222222....223456666..56899*************************************9975 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.037
    TIGR00956 189 laiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                  +  +G s+  + +     v   sGG + R+ ++ +l+ +++i+++D+ t  LD 
  MMETSP1174-20130828|15067_1 218 MDQMGFSILDDAQ---SSVSSFSGGWKMRIGLSKILLQEPNILLLDEPTNHLDL 268
                  5555555555543...45777899999999999999999999999999999984 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.29
    TIGR00956 780 devdGwvkPGkltALmGasGAGkttLlnvLa 810
                  +++   v+P    A +G  GAGk tL+ ++ 
  MMETSP1174-20130828|15067_1 422 ENLCLGVEPKDRIAFLGPNGAGKSTLFRIIL 452
                  5555556677777888888888888876654 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 0.00012
    TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkts..aeilkatalvaiyqasqdayelFdkvvvlyeG 287
                  +  +sGGe+ Rv+++ +++++a+++++D+ t  LD      + +al+      ++ +     i q +  +  l dk +v+y G
  MMETSP1174-20130828|15067_1 521 ISQLSGGEKGRVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEALQHYdgSVLVISHDRYFISQVATTICALEDKELVMYGG 603
                  56689******************************876666666777541122222333344557777777777777777777 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.5   2.3e+02     615     650 ..      78     113 ..      70     116 .. 0.82
   2 !    8.7   0.0    0.0015     0.094     814     889 ..     220     290 ..     203     305 .. 0.77
   3 ?   -3.8   0.0       8.6   5.5e+02     639     655 ..     437     453 ..     430     458 .. 0.72
   4 !   11.3   0.0   0.00024     0.015     824     894 ..     519     583 ..     476     594 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.5
    TIGR00630 615 lkgakennlkdidvsiplglltvitGvsgsGkstLi 650
                  ++  +++ l d + +++ g  + + G  g Gkst++
  MMETSP1174-20130828|15067_1  78 ISFGNHDVLEDATWEVRTGDRVGLVGANGCGKSTMM 113
                  55667778899999999999999999*******987 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0015
    TIGR00630 814 dvGLgYiklGqp.attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvvieh 889
                  ++G+  +   q+ + ++sGG   r+ L+k L ++     + +lDePt  L ++ ++ L + l+ l      +v++ h
  MMETSP1174-20130828|15067_1 220 QMGFSILDDAQSsVSSFSGGWKMRIGLSKILLQE---PNILLLDEPTNHLDLESVEWLENFLNDLKI---PIVIVSH 290
                  46666666666515689*************9875...6799***************99999988753...4555555 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 8.6
    TIGR00630 639 tGvsgsGkstLindiLv 655
                   G+ g+GkstL   iL 
  MMETSP1174-20130828|15067_1 437 LGPNGAGKSTLFRIILD 453
                  57788888888777765 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00024
    TIGR00630 824 qpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi 894
                  ++   LsGGe  rv L++ +        l +lDePt  L +   + L    + l +   +v+vi h+   i
  MMETSP1174-20130828|15067_1 519 KKISQLSGGEKGRVALSRMMLTP---ANLLVLDEPTNHLDIPAKEMLE---EALQHYDGSVLVISHDRYFI 583
                  45667888888888888877655...4588888888877665444333...44555566777887765544 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.031         2       5      23 ..      98     116 ..      95     120 .. 0.86
   2 !    9.2   0.0    0.0032       0.2       5      33 ..     433     460 ..     430     480 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.031
    TIGR00231   5 kivivGhvdvGKstLlnsl 23 
                  ++++vG  ++GKst+++ l
  MMETSP1174-20130828|15067_1  98 RVGLVGANGCGKSTMMKIL 116
                  69************98766 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0032
    TIGR00231   5 kivivGhvdvGKstLlnsllknkisites 33 
                  +i+++G  ++GKstL+  +l+++ ++ e 
  MMETSP1174-20130828|15067_1 433 RIAFLGPNGAGKSTLFRIILDKE-APNEG 460
                  6999****************999.77664 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00031      0.02     138     166 ..      88     116 ..      50     128 .. 0.86
   2 ?    0.6   0.0       0.6        38     147     170 ..     432     455 ..     424     489 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00031
    TIGR02546 138 DglltvgeGqRiGifaeaGvGkstLlsmi 166
                  D+   v +G R+G+ ++ G+Gkst+++ +
  MMETSP1174-20130828|15067_1  88 DATWEVRTGDRVGLVGANGCGKSTMMKIL 116
                  55666889*****************9876 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.6
    TIGR02546 147 qRiGifaeaGvGkstLlsmiarga 170
                   Ri   +  G+GkstL+  i +++
  MMETSP1174-20130828|15067_1 432 DRIAFLGPNGAGKSTLFRIILDKE 455
                  68999999*********9998765 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.049       3.1      26      37 ..      99     110 ..      95     113 .. 0.89
   2 ?    3.8   0.4      0.03       1.9     286     859 ..     153     195 ..     129     229 .. 0.41
   3 ?   -1.5   0.0       1.2        77     335     383 ..     324     371 ..     278     381 .. 0.63
   4 ?    0.6   0.0       0.3        19      26      37 ..     434     445 ..     430     448 .. 0.84
   5 !    6.2   0.0     0.006      0.39    1086    1121 ..     518     549 ..     517     578 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.049
    TIGR02168  26 tgiVGPNGcGKS 37 
                  +g VG NGcGKS
  MMETSP1174-20130828|15067_1  99 VGLVGANGCGKS 110
                  89*********9 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.03
    TIGR02168 286 lqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesl 859
                  l++el ++ +e +++ ++++ +++rle+ +++ ++++e +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   e+l
  MMETSP1174-20130828|15067_1 153 LREELLSVFTEANQVLEKLKATEQRLEETQDDPAAMQEAI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAL 195
                  2222222222222222222222222222222222222222...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 1.2
    TIGR02168 335 leeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeelee 383
                  ++++++++++ ++  +++++++ + +++ ++++ ++ s++++ e++l++
  MMETSP1174-20130828|15067_1 324 KKARFEAWKKTYDAQQKSIKEEMKWIKS-NKNKPNMGSSVNSRETQLKK 371
                  3444444444444444444444444443.44444444444444444444 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.3
    TIGR02168  26 tgiVGPNGcGKS 37 
                  ++  GPNG GKS
  MMETSP1174-20130828|15067_1 434 IAFLGPNGAGKS 445
                  6789*******9 PP

  == domain 5    score: 6.2 bits;  conditional E-value: 0.006
    TIGR02168 1086 lqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDE 1121
                   ++++s+LSGGEK  +Al+     +++ Pa + +LDE
  MMETSP1174-20130828|15067_1  518 NKKISQLSGGEKGRVALS----RMMLTPANLLVLDE 549 
                   689*************97....56788888888888 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0041      0.26       2      20 ..      99     117 ..      98     129 .. 0.92
   2 ?    2.2   0.0      0.47        30       2      22 ..     434     454 ..     433     458 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0041
    TIGR00152   2 igltGgigsGKstvakilk 20 
                  +gl+G  g+GKst++kil+
  MMETSP1174-20130828|15067_1  99 VGLVGANGCGKSTMMKILN 117
                  8****************97 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.47
    TIGR00152   2 igltGgigsGKstvakilkdk 22 
                  i+  G  g GKst+ +i+ dk
  MMETSP1174-20130828|15067_1 434 IAFLGPNGAGKSTLFRIILDK 454
                  789999***********9987 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.031         2       2      22 ..      98     118 ..      97     121 .. 0.91
   2 ?    6.0   0.0     0.044       2.8       2      21 ..     433     452 ..     432     462 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.031
    TIGR02528   2 rimliGsvgcGkttLtqaLkg 22 
                  r+ l+G  gcGk t+++ L+g
  MMETSP1174-20130828|15067_1  98 RVGLVGANGCGKSTMMKILNG 118
                  7889*************9998 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.044
    TIGR02528   2 rimliGsvgcGkttLtqaLk 21 
                  ri+++G+ g+Gk tL++ + 
  MMETSP1174-20130828|15067_1 433 RIAFLGPNGAGKSTLFRIIL 452
                  9**************98665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.28        18     191     210 ..      98     117 ..      88     128 .. 0.89
   2 !    8.6   0.0    0.0027      0.17     191     245 ..     433     487 ..     429     492 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.28
    TIGR03156 191 tvalvGYTNaGKstllnalt 210
                  +v+lvG    GKst+++ l 
  MMETSP1174-20130828|15067_1  98 RVGLVGANGCGKSTMMKILN 117
                  799*************9886 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0027
    TIGR03156 191 tvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpee..eevlltDTV 245
                  ++a+ G   aGKstl++ + ++e+ +e     TL p++    ++++  +e++l DTV
  MMETSP1174-20130828|15067_1 433 RIAFLGPNGAGKSTLFRIILDKEAPNEGT--CTLGPKVSVNYFAQNqaDELVLEDTV 487
                  689999999***********999876665..7999987665555441169******9 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2        79      33      58 ..     101     122 ..      99     126 .. 0.85
   2 !    7.3   0.0    0.0026      0.16    1212    1262 ..     242     295 ..     238     381 .. 0.83
   3 ?   -3.2   0.0       3.9   2.5e+02      34      44 ..     437     447 ..     435     450 .. 0.86
   4 ?   -2.1   0.0       1.8   1.1e+02     774     812 ..     484     525 ..     475     530 .. 0.79
   5 ?    2.8   0.0      0.06       3.8    1213    1277 ..     531     587 ..     529     595 .. 0.82
   6 ?   -2.5   0.0       2.3   1.5e+02     212     256 ..     605     649 ..     593     662 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.2
    TIGR00606  33 lvGPnGaGkttiiealkyittGdlPp 58 
                  lvG nG+Gk t++  l+    Gd+Pp
  MMETSP1174-20130828|15067_1 101 LVGANGCGKSTMMKILN----GDIPP 122
                  79**********99886....66666 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0026
    TIGR00606 1212 irlalaevfclnCgiialdePttnldrekieslaialvei...iksrsrqrdlq 1262
                   +r+ l+ ++  +  i+ ldePt  ld e +e l   l ++   i   s++r++ 
  MMETSP1174-20130828|15067_1  242 MRIGLSKILLQEPNILLLDEPTNHLDLESVEWLENFLNDLkipIVIVSHDREFL 295 
                   699999999999*********************999988622233333444444 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.9
    TIGR00606  34 vGPnGaGktti 44 
                   GPnGaGk t+
  MMETSP1174-20130828|15067_1 437 LGPNGAGKSTL 447
                  6********97 PP

  == domain 4    score: -2.1 bits;  conditional E-value: 1.8
    TIGR00606 774 letimaeeesakvlltdvti...ierlqeelkdverkiaqla 812
                   +t+ a +e a v +t   i   + ++  + +dv++ki ql 
  MMETSP1174-20130828|15067_1 484 EDTVLATLEKAAVTQTYNEIralLGQFLFKGDDVNKKISQLS 525
                  369************97654333899*************986 PP

  == domain 5    score: 2.8 bits;  conditional E-value: 0.06
    TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvellg 1277
                   r+al+ ++     ++ ldePt  ld    e l  al        +  d  +lvi hd  ++ +++
  MMETSP1174-20130828|15067_1  531 RVALSRMMLTPANLLVLDEPTNHLDIPAKEMLEEAL--------QHYDGSVLVISHDRYFISQVA 587 
                   899999999999*************87776665555........777888999999999888775 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 2.3
    TIGR00606 212 lkqykekaceirdklvskeaqlesskeivkskene.ldelkerlke 256
                  +++y e+  ei dk+ ++    + s+ei++ k  e +de  +r+k+
  MMETSP1174-20130828|15067_1 605 YRHYMENKPEIADKVEARFVAGD-SREISRAKVIEaVDETEKRKKK 649
                  56666777777777777765443.5677766643325666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       388  (0.094588); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        88  (0.0214529); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 2.31u 0.22s 00:00:02.53 Elapsed: 00:00:01.46
# Mc/sec: 611.13
//
Query:       MMETSP1174-20130828|15070_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 902.81
//
Query:       MMETSP1174-20130828|15073_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 168.95
//
Query:       MMETSP1174-20130828|15075_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 667.71
//
Query:       MMETSP1174-20130828|15076_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 927.59
//
Query:       MMETSP1174-20130828|15074_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1247.30
//
Query:       MMETSP1174-20130828|15079_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-08   30.1   0.0    6.3e-08   29.8   0.0    1.1  1  TIGR00261 traB: TraB family protein
     0.0097   13.6   0.2      0.016   12.9   0.1    1.4  2  TIGR00070 hisG: ATP phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.1e-11   6.3e-08     148     215 ..      47     116 ..      35     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.1e-11
    TIGR00261 148 evdelleedvl.eklvkelkkisPkvkkvliderdefiakkll.eaekrknsivavvGaGhveGivralk 215
                   v++++ +  l e + + l +++P+ ++ ++ erd  +a+ +  e+     +++avvGa hv Gi + l+
  MMETSP1174-20130828|15079_1  47 VVEKVKADGSLrETMFERLAQEVPEFTRAFLTERDFIMAEAIRrEGAAGAHHVIAVVGAAHVPGIAEKLR 116
                  4678888878878999************************99637788899***************9986 PP

>> TIGR00070  hisG: ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.058   1.2e+02     137     167 ..      12      42 ..       9      46 .. 0.84
   2 !   12.9   0.1   7.8e-06     0.016      86     144 ..      38      97 ..      22     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.058
    TIGR00070 137 leGavElapllgladaIvDivetGttLreng 167
                  l G  E + ++  a++I D    G+ L+e +
  MMETSP1174-20130828|15079_1  12 LLGTSESTFSALEAEVIKDAEARGEELSEAE 42 
                  678889999999999****999999999876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 7.8e-06
    TIGR00070  86 fgkcklvlAvpeesdvesledlkegk..riATkypnltreylekkg.vkveivkleGavEla 144
                   +++++++Av e+ + +   +l+e++  r A + p+ tr++l ++  + +e ++ eGa+ + 
  MMETSP1174-20130828|15079_1  38 LSEAEVSVAVVEKVKADG--SLRETMfeRLAQEVPEFTRAFLTERDfIMAEAIRREGAAGAH 97 
                  578899999999998888..77776677******************999*******998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 546.16
//
Query:       MMETSP1174-20130828|15078_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 873.16
//
Query:       MMETSP1174-20130828|15081_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 910.72
//
Query:       MMETSP1174-20130828|15080_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-12   43.2   0.4    1.1e-11   42.6   0.3    1.1  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    9.3e-08   28.2   0.5     0.0012   14.6   0.0    1.9  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    6.5e-05   20.5   0.8      0.039   11.5   0.4    2.7  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0036   13.4   1.9      0.014   11.4   0.2    1.9  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
       0.01   14.3   0.6      0.086   11.3   0.2    2.3  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.3   1.3e-14   1.1e-11      56     191 ..     233     373 ..     226     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.3e-14
    TIGR02521  56 kAleldpkdadanlalAlyyqqlgelekAeesf.rkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie....dpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAral 191
                   A+ ++p + +++ +l+ + ++  + ++  e++ r+A++++p+ +++ NN Gt L+q+++yeeAe  +++A++    d + + pa +++N+g +    g+ ++ae++ + a ++ p +++++ +la l  + g+  e  a+
  MMETSP1174-20130828|15080_1 233 LAVVVNPYNHNTYFSLGEAIKDDPDRKNDSEYYlREAIAIEPDFYRAWNNLGTLLYQTQRYEEAESALSRALAyvpvDSAPYVPAFVLTNIGNVRFYMGQLKRAEEAYRAANDAWPANKDANCNLAVLLKHLGRERESAAQ 373
                  588999999999*****9999988766665555599***********************************9832223344568899**************************************9775444444433333 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-06    0.0012     481     531 ..     259     309 ..     236     313 .. 0.76
   2 !   11.5   0.0   1.2e-05      0.01     128     184 ..     320     376 ..     316     386 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-06
    TIGR02917 481 lakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpk 531
                  ++  + ++++A  iepdf+ A  nL +l +q+++ ++A   ++++la+ p 
  MMETSP1174-20130828|15080_1 259 KNDSEYYLREAIAIEPDFYRAWNNLGTLLYQTQRYEEAESALSRALAYVPV 309
                  344566789999999999999999999999999999999999999998885 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.2e-05
    TIGR02917 128 lalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvde 184
                  l+  g+  +  g+l++A++++ +A+ + p++ +a+  lA+l+   ++  e  a +d+
  MMETSP1174-20130828|15080_1 320 LTNIGNVRFYMGQLKRAEEAYRAANDAWPANKDANCNLAVLLKHLGRERESAAQLDT 376
                  555666666777777777777777777777777777777776666666655555554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   4.9e-05      0.04      31     115 ..     221     306 ..     215     313 .. 0.88
   2 !    9.7   0.3   0.00017      0.14      46     108 ..     271     339 ..     261     344 .. 0.77
   3 !   11.5   0.4   4.7e-05     0.039      28     117 ..     287     382 ..     287     391 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.9e-05
    TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYal.aaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                  + ++++ +kl +l ++++p++++  ++L+++ +   + ++  + Y + a a+++d  r+   ++  l++ +++eeA++aL +a++ 
  MMETSP1174-20130828|15080_1 221 SADWADQVKLWELAVVVNPYNHNTYFSLGEAIKDDPDRKNDSEYYLReAIAIEPDFYRAWNNLGTLLYQTQRYEEAESALSRALAY 306
                  56677888999999********************99999999999764788999999************************99876 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00017
    TIGR02552  46 aldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvy......haaecllalgekeeAlka 108
                  a++p  ++ w  L+  l ++++yeeA  a ++a+a  + d +p++       ++++ + +g+ ++A++a
  MMETSP1174-20130828|15080_1 271 AIEPDFYRAWNNLGTLLYQTQRYEEAESALSRALAYVPVDSAPYVpafvltNIGNVRFYMGQLKRAEEA 339
                  567888999****************************99999987222222345666666666666665 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 4.7e-05
    TIGR02552  28 lyqqgkyeeAeklF.qlLaaldpteakywlg.....LaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                  lyq+ +yeeAe +  ++La++ + +a y+ +     ++ ++  +++ ++A +aY +a  + + + ++   +a+ l  lg+++e+ + L++  +   
  MMETSP1174-20130828|15080_1 287 LYQTQRYEEAESALsRALAYVPVDSAPYVPAfvltnIGNVRFYMGQLKRAEEAYRAANDAWPANKDANCNLAVLLKHLGRERESAAQLDTLSRFHP 382
                  699*******97652799999988888874422223899*******************************************99999998766655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.019        16     424     494 ..     237     308 ..     219     315 .. 0.73
   2 !   11.4   0.2   1.7e-05     0.014     404     464 ..     326     386 ..     314     396 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.019
    TIGR03939 424 tAPgNqslrlalae.veraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryP 494
                  + P N ++   l+e ++   ++ +++e++l++a ++epd + a  +++ +  ++q +++ae ++    a  P
  MMETSP1174-20130828|15080_1 237 VNPYNHNTYFSLGEaIKDDPDRKNDSEYYLREAIAIEPDFYRAWNNLGTLLYQTQRYEEAESALSRALAYVP 308
                  457777777777754666677888889999999999999999988888888888888888887776665555 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.7e-05
    TIGR03939 404 llaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdsls 464
                  ++ y g+l+ Ae++ +++    P+N++ + +la + +  g+ r+++ +l+ ++++ pd  +
  MMETSP1174-20130828|15080_1 326 VRFYMGQLKRAEEAYRAANDAWPANKDANCNLAVLLKHLGRERESAAQLDTLSRFHPDHRI 386
                  6789***************************************************766543 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.056        46      45      64 ..     283     302 ..     238     313 .. 0.60
   2 !   11.3   0.2   0.00011     0.086      10     108 ..     285     383 ..     278     391 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.056
    TIGR02795  45 lGealyakkkykdAakafle 64 
                  lG +ly+++ y++A+ a + 
  MMETSP1174-20130828|15080_1 283 LGTLLYQTQRYEEAESALSR 302
                  45555555555555555444 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00011
    TIGR02795  10 llvlkegdYakAeqaFkaFlkkYPkstlapnAqYwl...GealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPk 108
                  +l+++ ++Y++Ae a+ + l   P ++      + l   G++ +  +++k+A++a++++  ++p ++   da  +l+++l++lg++ ++ + l+++ + +P+
  MMETSP1174-20130828|15080_1 285 TLLYQTQRYEEAESALSRALAYVPVDSAPYVPAFVLtniGNVRFYMGQLKRAEEAYRAANDAWPANK---DANCNLAVLLKHLGRERESAAQLDTLSRFHPD 383
                  5556667777777777777777776655555555433338888999999999999999999988876...56677888899999999888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1131.74
//
Query:       MMETSP1174-20130828|15084_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|15082_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   24.0   0.0    4.9e-06   23.5   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00078   17.0   0.0     0.0014   16.2   0.0    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    0.00081   16.1   0.6     0.0012   15.5   0.4    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
     0.0014   16.0   0.0     0.0024   15.3   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
      0.008   14.0   0.1      0.013   13.3   0.0    1.3  1  TIGR01915 npdG: NADPH-dependent F420 reductase
  ------ inclusion threshold ------
      0.015   12.6   0.3      0.051   10.9   0.2    1.7  2  TIGR00036 dapB: dihydrodipicolinate reductase
      0.021   11.9   0.1      0.046   10.8   0.0    1.6  1  TIGR01746 Thioester-redct: thioester reductase domain
      0.023   11.8   0.0      0.036   11.2   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      0.028   11.1   0.0      0.049   10.3   0.0    1.4  1  TIGR01179 galE: UDP-glucose 4-epimerase
      0.034   11.7   0.1       0.11   10.1   0.1    1.8  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.2e-08   4.9e-06       3     115 ..      15     143 ..      13     180 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.2e-08
    TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdr.......rnleeldvEiveGdlk.........deaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssva 115
                  v vtGatG vG+ vvr ll+eG++v ++ r++ ++       +  ++l+ Eiv  dl+         + + +k+a +G + l+  A  +   ++  +    a +    +  ++A e +  +vv +ss +
  MMETSP1174-20130828|15082_1  15 VAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKAklvlpsyQYTKRLSKEIVFSDLEwreidfataSGDEIKNACAGANSLIWCASGFTDKMESIDIRAMAEIPRVFSAATEADESQAPQVVMCSSAG 143
                  77****************************987761111111345789999999998622221111123446666666666666665543322222222222233333333444555566677777765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.4e-06    0.0014       5      87 ..      17     101 ..      14     118 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.4e-06
    TIGR01829   5 vtGglgGiGtaickrlakdGykvvanvapneerakewl...qekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaG 87 
                  vtG++g +G+ + +rl ++G+ v+a  + n e+ak +l   q ++   ++++++  +  +++ a+a  ++++++    + l+ +a 
  MMETSP1174-20130828|15082_1  17 VTGATGRVGALVVRRLLTEGHSVIAMGR-NGEKAKLVLpsyQYTKRLSKEIVFSDLEWREIDFATASGDEIKNACAGANSLIWCAS 101
                  9************************877.455554443111444555688889999999999999999999988877777777764 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4     3e-06    0.0012     148     182 ..      14      48 ..       5      55 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3e-06
    TIGR02823 148 evlVtGAtGgVgslavalLsklGyevvavtgkkee 182
                  +v VtGAtG Vg+l v+ L + G++v+a+  + e+
  MMETSP1174-20130828|15082_1  14 HVAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEK 48 
                  79*************************97444443 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.7e-06    0.0024       1      37 [.      15      51 ..      15      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.7e-06
    TIGR01777  1 vlitGgtGliGralveelekkghevviltrskekeke 37
                 v++tG+tG +G  +v++l ++gh+v+++ r+ ek+k 
  MMETSP1174-20130828|15082_1 15 VAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKAKL 51
                 689***************************9986554 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.2e-05     0.013       1      38 [.      13      50 ..      13      64 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.2e-05
    TIGR01915  1 lkiavlGGtGdqGkGlalRlAkageeiiiGsRdkekAe 38
                 l++av G tG +G+ ++ Rl ++g+ +i   R+ ekA+
  MMETSP1174-20130828|15082_1 13 LHVAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKAK 50
                 689*********************************97 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00012     0.051       2      24 ..      13      35 ..      12      53 .. 0.82
   2 ?   -1.3   0.0      0.65   2.7e+02      77     118 ..      76     116 ..      57     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    TIGR00036  2 ikvavaGaaGrmGrevikavkea 24
                 ++vav+Ga+Gr+G  v++++ ++
  MMETSP1174-20130828|15082_1 13 LHVAVTGATGRVGALVVRRLLTE 35
                 68****************99874 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.65
    TIGR00036  77 iDfttpeavlenvkialekgvrlVvGTTGfseed.lkelkdla 118
                  iDf+t+++  +++k a +    l+    Gf+++    +++++a
  MMETSP1174-20130828|15082_1  76 IDFATASG--DEIKNACAGANSLIWCASGFTDKMeSIDIRAMA 116
                  78888776..788999999999999999998763033444444 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011     0.046       1      34 [.      14      45 ..      14      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR01746  1 tvlLTGAtGfLGaylleeLlrrsteakviClVRa 34
                 +v +TGAtG +Ga  ++ Ll++    +vi++ R 
  MMETSP1174-20130828|15082_1 14 HVAVTGATGRVGALVVRRLLTEG--HSVIAMGRN 45
                 6889******************7..679888775 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.7e-05     0.036       4      40 ..      15      51 ..      13      91 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.7e-05
    TIGR01963  4 alvtGaasGiglaiakelaaaGakvvvndleeeaaea 40
                 + vtGa++ +g+ + ++l  +G++v+  + + e+a+ 
  MMETSP1174-20130828|15082_1 15 VAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKAKL 51
                 679**************************99777764 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012     0.049       2      46 ..      15      59 ..      14      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00012
    TIGR01179  2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkaleki 46
                 + vtG++G +G+ vvr ll +g++v+ +    +  k +l+  + +
  MMETSP1174-20130828|15082_1 15 VAVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKAKLVLPSYQYT 59
                 679***********************9987777777666666644 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00026      0.11       2      38 ..      16      51 ..      15     115 .. 0.70
   2 ?   -0.5   0.0      0.43   1.8e+02      47      88 ..     102     146 ..      78     149 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00026
    TIGR01830  2 lvtGasrgiGkaiakklakegakvviterskeekaee 38
                  vtGa+  +G+ ++++l +eg++v+ + r+ e++ + 
  MMETSP1174-20130828|15082_1 16 AVTGATGRVGALVVRRLLTEGHSVIAMGRNGEKA-KL 51
                 59************************98876654.33 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.43
    TIGR01830  47 gvkaaavkldvsdeeevkelveeveeelg...eidilvnnAGitr 88 
                  g + ++ ++d+   +e+ +++++++e+ +      ++ ++AG+tr
  MMETSP1174-20130828|15082_1 102 GFTDKMESIDIRAMAEIPRVFSAATEADEsqaPQVVMCSSAGVTR 146
                  556667778888888888887766654441114456678999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.51
# Mc/sec: 885.10
//
Query:       MMETSP1174-20130828|15085_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1001.92
//
Query:       MMETSP1174-20130828|15086_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-71  236.8   0.0    8.4e-71  236.6   0.0    1.0  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
      2e-05   21.5   0.0      0.051   10.3   0.0    2.4  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    2.7e-05   20.9   0.0      0.042   10.4   0.0    2.3  2  TIGR02814 pfaD_fam: PfaD family protein
     0.0014   15.5   0.4     0.0067   13.2   0.0    2.1  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
     0.0034   14.8   0.0     0.0052   14.2   0.0    1.2  1  TIGR01919 hisA-trpF: bifunctional HisA/TrpF protein


Domain annotation for each model (and alignments):
>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   0.0     1e-73   8.4e-71       2     305 ..       7     322 ..       6     324 .. 0.93

  Alignments for each domain:
  == domain 1    score: 236.6 bits;  conditional E-value: 1e-73
    TIGR03151   2 tkltelleieyPilqGgmawvataelaaavseaGGlGiigaGna.pkdvvkkeikkvkeltdkPfGvnillls.....pfvdelvdlvieekvpvvttGaGnPgkyierlkeagvkviPvvasvalakrleklGadaviaeGmeaGGhiGe..lttlalvpqvvdavsiPviaaGGiadgrGlaaalalGaeavqlGtrflvakesevhpnykekvlkakdrdtvvtgrkvGhpvrvlknkltrkyeelek...egadleeleklgaGal.rkavveGdveeGsvmaGqiaglikeikpakeiieeilkeakevik 305
                  tk+t++l+ie+Pi++Ggm+ ++t+el aavs+aGGlG  +a na  ++  ++ i++v++ltd+PfGvn+ +l      p  +e + ++ie  v++v t   nP k+i+ +ke+g+  i    ++  a   ++lG+d v  +G e+ Gh Ge  +  ++l  + + ++++P + +GG++dgr laaalalGa++v+ Gtrf +++e++   +yke+++ a +rdtv+  r++   +rv++n +++k+ee+e+   ++ +++ +  l +G+  r+a  +Gd + G   aGq+ gli++  +++e+i  +++ea+ +i+
  MMETSP1174-20130828|15086_1   7 TKVTQMLGIEHPIIMGGMTGTGTPELCAAVSNAGGLGTFAAHNAgSPEGCRDWINRVRQLTDRPFGVNLTILPtagppPPYEEYARVIIESGVKIVETAGSNPKKWIPLFKENGLITIHKCVAIRHAISAQRLGVDIVSLDGFECAGHPGEddIGNFVLQAKGATSLKVPFVCSGGVGDGRQLAAALALGADGVNCGTRFCATQECNWPDSYKERMVLADERDTVLMFRQLHNTARVFRNDVAKKVEEIEAskgRELEFSDVAPLVMGKRgREAEAQGDADGGVWTAGQVVGLISDLPTCEELITRMVQEAESTIQ 322
                  89***************************************99835799*********************995333335689********************************9999888888999999********************76689999999999**************************************************************************************9654555666777899998548999************************************99886 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00018      0.15      23      83 ..       5      67 ..       2      93 .. 0.86
   2 !   10.3   0.0   6.2e-05     0.051     320     365 ..     167     212 ..     154     222 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00018
    TIGR01302 23 lstrltkniklkiPvlssamDtvtesklaialAreGgiGvi..HknmsiekqveevkkvKrae 83
                 l+t++t+ + ++ P++  +m      +l +a+ ++Gg+G    H+  s+e   + +++v+++ 
  MMETSP1174-20130828|15086_1  5 LTTKVTQMLGIEHPIIMGGMTGTGTPELCAAVSNAGGLGTFaaHNAGSPEGCRDWINRVRQLT 67
                 899******************9999**************754488888888888888888765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 6.2e-05
    TIGR01302 320 aeaaaksgipviADGGirysGdivKalalGadavmlGsllagteEs 365
                  a+ a++  +p +  GG+    +++ alalGad v  G+ + +t+E 
  MMETSP1174-20130828|15086_1 167 AKGATSLKVPFVCSGGVGDGRQLAAALALGADGVNCGTRFCATQEC 212
                  567888899***********************************96 PP

>> TIGR02814  pfaD_fam: PfaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   5.2e-05     0.042      12     107 ..      10     105 ..       4     122 .. 0.82
   2 !    8.0   0.0   0.00027      0.22     229     281 ..     179     231 ..     165     234 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.2e-05
    TIGR02814  12 redyevryaylaGamakgiaskelvialgragllgffGagGl.sleeveeaiekiqqalekgeaygvnlihslsd..pelekklvdlllrkgvrvveas 107
                  ++  +++++ + G+m+ g ++ el  a+++ag lg f a    s e  ++ i++++q +++ + +gvnl   ++   p   ++   ++++ gv++ve++
  MMETSP1174-20130828|15086_1  10 TQMLGIEHPIIMGGMT-GTGTPELCAAVSNAGGLGTFAAHNAgSPEGCRDWINRVRQLTDR-P-FGVNLTILPTAgpPPPYEEYARVIIESGVKIVETA 105
                  567789999999*995.89*******************9876256779999***9876544.5.****9876654224556678889999999999987 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00027
    TIGR02814 229 aaGGiGtPeavaaafalGadfivtgsvnqaaveagtsdkvkklLakidvqDta 281
                   +GG+G     aaa alGad +  g+   a++e+   d+ k+ +  +d +Dt 
  MMETSP1174-20130828|15086_1 179 CSGGVGDGRQLAAALALGADGVNCGTRFCATQECNWPDSYKERMVLADERDTV 231
                  68************************************999999988888885 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.12     1e+02      52      67 ..      14      30 ..       3      39 .. 0.73
   2 !   13.2   0.0   8.1e-06    0.0067     251     292 ..     165     207 ..     161     245 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.12
    TIGR02151 52 klkaPllisamTG.Gse 67
                  ++ P+++ +mTG G++
  MMETSP1174-20130828|15086_1 14 GIEHPIIMGGMTGtGTP 30
                 4789********95554 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 8.1e-06
    TIGR02151 251 levrs.aakkleliasGGlrsgldvakalaLGAdlvglarplL 292
                  l+++  ++ k++ + sGG+ +g ++a alaLGAd v +   + 
  MMETSP1174-20130828|15086_1 165 LQAKGaTSLKVPFVCSGGVGDGRQLAAALALGADGVNCGTRFC 207
                  56666678899***********************988776665 PP

>> TIGR01919  hisA-trpF: bifunctional HisA/TrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-06    0.0052      71     112 ..     171     214 ..     127     227 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.3e-06
    TIGR01919  71 gkldvdvelsggirddesleaalatgaarvnigt..aalenpew 112
                    l+v    sgg+ d   l+aala ga  vn gt   a ++ +w
  MMETSP1174-20130828|15086_1 171 TSLKVPFVCSGGVGDGRQLAAALALGADGVNCGTrfCATQECNW 214
                  567888889************************94446666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 929.42
//
Query:       MMETSP1174-20130828|15093_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 770.65
//
Query:       MMETSP1174-20130828|15092_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1788.45
//
Query:       MMETSP1174-20130828|15094_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.6   3.6       0.12   10.5   0.8    2.2  2  TIGR01951 nusB: transcription antitermination factor NusB
        5.6    3.9   8.9        1.6    5.7   3.4    1.8  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR01951  nusB: transcription antitermination factor NusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.8   5.9e-05      0.12      23      92 ..      24     112 ..      10     119 .. 0.67
   2 ?   -2.2   0.0       0.5     1e+03      44      46 ..     159     161 ..     132     188 .. 0.50

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.9e-05
    TIGR01951  23 veeileelleekele...............eedreyakelvrgvlen....qeeidelieehlkdwklerLakvdraiLrlavyEllyr 92 
                  v+++ +++++ ++++               +e  +++++ ++ ++++     +e+++++++  ++ ++e ++ +  + Lrl + E+  +
  MMETSP1174-20130828|15094_1  24 VDDARKKFENLQRMSesqsailrtafkfklDERDDLVMSACSTIAKHspeaAAELKSQLQNLQQQKSIEAMPDTTVNNLRLMTSEMNDL 112
                  5566666655555555556666777777775555555555555555500006667777777778899******************9876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.5
    TIGR01951  44 ake 46 
                  ++ 
  MMETSP1174-20130828|15094_1 159 LMA 161
                  222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.0     0.014        28      61     147 ..       3      90 ..       1      99 [. 0.58
   2 ?    5.7   3.4   0.00077       1.6      43     131 ..      84     166 ..      59     191 .. 0.42

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.014
    TIGR03752  61 lrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqa.kleelldelqkkledvaaeke 147
                  +  l  +++++ +++a+ ++  ++ +k+ e+l++++es +  +++a++ +  e ++    + +++a ++ e+ +el+++l++++++k+
  MMETSP1174-20130828|15094_1   3 IENLLVDYHDIDHQTARSSERVDDARKKFENLQRMSESQSAILRTAFKFKLDERDDLVMSACSTIAkHSPEAAAELKSQLQNLQQQKS 90 
                  5556666666666666666666777777777777777777766776666655555555555555552334455555656655444443 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00077
    TIGR03752  43 speelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvder.iqqaleaekkelkkekeqlkeeqakleel 131
                    ++ k++++  dt  ++lr +++e+++lr + ++lek  e+l         r  + d   ++++ e e+ ++++++++ +e +a l+e+
  MMETSP1174-20130828|15094_1  84 NLQQQKSIEAMPDTTVNNLRLMTSEMNDLRAKNRELEKSFESLS-------LRPPEPDIDlVKRRNEHEEAKIAARENHIAELMALLQEA 166
                  22344566666677666666666666666666666666665554.......332222222022222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 512.12
//
Query:       MMETSP1174-20130828|15095_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1174-20130828|15099_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|15107_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 476.63
//
Query:       MMETSP1174-20130828|15105_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-39  133.5   1.5    5.5e-29   99.1   0.6    2.5  2  TIGR03073 release_rtcB: release factor H-coupled RctB family protein


Domain annotation for each model (and alignments):
>> TIGR03073  release_rtcB: release factor H-coupled RctB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.2e-12   1.3e-08      15      84 ..      48     123 ..      46     135 .. 0.81
   2 !   99.1   0.6   1.3e-32   5.5e-29     117     356 .]     201     482 ..     184     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.2e-12
    TIGR03073  15 aiqqlkttaelkgm.krvvGlPdlhPgrgyPiG.aaffske....rlyPalvGndiGcgmalwetdllarklkldk 84 
                  a++q+ ++a+l+g+ ++ +GlPd+h g g+ iG +a f  e    ++ P  vG di cg+ l +t+l +  +  dk
  MMETSP1174-20130828|15105_1  48 AVKQIANVASLPGIvRHSIGLPDVHSGYGFAIGnVAAFDMEdpnaVVSPGGVGFDINCGVRLIRTNLMESDILDDK 123
                  89***********72678***************635554332333899*******************998876555 PP

  == domain 2    score: 99.1 bits;  conditional E-value: 1.3e-32
    TIGR03073 117 alGtiGGGnhfaelqqvdkildedalellgldk.kkllllvhsGsrGlGqai.....lrkhveefs......hn...Glaenseeaeaylaehdkalafakenrq....liakrllerlrakgep.....lldvkhnl..vsaatvege..dgllhrkGatpa..........dq....glvvipGsrGdysylvkPvpse..eslfslahGaGrkWkrseckerlaakfsvkqlkrtrlgsrvicedrqliyeeaPeayksidsvvdaleeaglikvvarlkP 356
                  ++Gt+G Gnh+ae+q v++++d+ a++ +g+d+  ++ +++hsGsrGlG+++     l+ +v++        +        +s+e ++yl   + a ++a  nr     l+ + + +++++ +++     ++dv+hn+  v++  v+g+  + l+hrkG+t a          d     ++v+i G+ G  sy++    +   e+  s  hGaGr   rs+ +  l+      +l+++ ++ rv     +l+ eeaPeayk++ +vvd+ ++ag+ +   +l+P
  MMETSP1174-20130828|15105_1 201 QMGTLGAGNHYAEIQVVEEVFDKFAAQRMGIDRvGQVCVMIHSGSRGLGHQVatdalLEMEVAMARdkiqtnDRqlaCARIHSDEGRRYLGGMAAAANYAWVNRSsmtfLVRQVFSKHFNMAADDldmhlVYDVSHNIakVEQHVVNGRprQLLVHRKGSTRAfpphhplipvDYqfigQPVLIGGTMGTCSYVLTGTAKGmaETWGSTCHGAGRAASRSKARRTLTYENVLGKLQQKGISIRVA--SPKLVMEEAPEAYKDVTAVVDTCHHAGISNKAVKLRP 482
                  68*****************************97369*************8652222255555432211101111111234579999******************744433444445566666654222226899999844556667664226789****99653322222222222333689*************998775449999**********************************9996..578************************9999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 1820.22
//
Query:       MMETSP1174-20130828|15104_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 1874.78
//
Query:       MMETSP1174-20130828|15110_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-24   82.3   0.1      3e-18   64.2   0.1    2.3  2  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    1.4e-16   58.6   0.2      3e-12   44.4   0.1    2.1  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
    8.9e-05   19.3   0.0    0.00073   16.3   0.0    2.0  2  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06    0.0021      33      69 ..      34      70 ..      21      82 .. 0.86
   2 !   64.2   0.1   2.2e-21     3e-18      80     238 ..     100     259 ..      96     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-06
    TIGR01331 33 sPvteADlaaeklilekLraltPdiPvlsEEeaeigl 69
                  Pvt AD +a+ +++++ r+ +P + ++sEE    ++
  MMETSP1174-20130828|15110_1 34 EPVTMADTRANLILVNGHRNRFPGVSIMSEESRPPTT 70
                 5******************************765544 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 2.2e-21
    TIGR01331  80 LvDPlDGtkeFikrngeF.tvniaLveegkPvlGvvyaPvlgvl.yfaeagkaakkevddqalkkkikvreadsealavvisrshaeekvkelleelgaelv..vsvgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildldgkplaynkre 238
                  ++DPlD tke+ +    F t++  +v +g+Pv+G+++ P +++   +a   +++     d  ++      +a++ +  +  srsha      + + +g+++    ++g++ k+ lv  g++d Y+ +++ + WDt Ag+a+++++Gg+++d+ g+ l+yn + 
  MMETSP1174-20130828|15110_1 100 IIDPLDATKEYTEDLLPFvTTQQCIVFKGRPVAGIIHQPFVQRGpTMASVPTGQVFGGVDP-AMG--GAPSASEAKKTITFSRSHAGTAQGIISSRFGENFKslQAGGAGYKALLVTAGQVDAYLHVTKSKVWDTCAGDAMIHAIGGKLTDTTGQTLKYNPKT 259
                  79***********998885778899**************9987412333334444333331.222..222334445689999999987766666699887651167899**************************************************9875 PP

>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.5e-05      0.02      32      66 ..      32      66 ..      19      75 .. 0.81
   2 !   44.4   0.1   2.2e-15     3e-12      74     230 ..      97     254 ..      91     271 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
    TIGR02067 32 dktpVteADraaEeaireliaakfPddgilGEEfg 66
                   +pVt AD+ a  ++++  +++fP  +i+ EE  
  MMETSP1174-20130828|15110_1 32 VIEPVTMADTRANLILVNGHRNRFPGVSIMSEESR 66
                 338******************************86 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 2.2e-15
    TIGR02067  74 yvWvlDPiDGTksFirG.vPvwgtLiaLlekgkpvlGvisqPalger.fvaakgegallnggerelrvsevaklsdAvlvttspkaledeeereafeklrrkarltryggdcyayalvAsGrvdlvve.aelspyDiaalipiieeAggvitdwkGkeae 230
                   + ++DP+D Tk + +  +P  +t   ++ kg+pv+G+i+qP++++   +a+   g +  g  ++ ++    + s+A  + t  ++ + +++    ++  ++ +  ++gg  y+ +lv +G+vd     ++ +++D++a   +i+  gg++td +G++++
  MMETSP1174-20130828|15110_1  97 LTVIIDPLDATKEYTEDlLPFVTTQQCIVFKGRPVAGIIHQPFVQRGpTMASVPTGQVFGG--VDPAMGGAPSASEAKKTITFSRSHAGTAQGIISSRFGENFKSLQAGGAGYKALLVTAGQVDAYLHvTKSKVWDTCAGDAMIHAIGGKLTDTTGQTLK 254
                  5679***********9746*************************98424555555555554..67777777777777777777777788888899999**************************9776256799**********************9876 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.037        50      42      76 ..      34      66 ..      24      79 .. 0.86
   2 !   16.3   0.0   5.3e-07   0.00073     275     343 ..     212     275 ..     199     289 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.037
    TIGR01330 42 sPvtvaDygaqaivilvlkeefpddklsivaeeds 76
                  Pvt+aD  a  i+++  ++ fp     i++ee+ 
  MMETSP1174-20130828|15110_1 34 EPVTMADTRANLILVNGHRNRFPGVS--IMSEESR 66
                 59********************9855..9999975 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 5.3e-07
    TIGR01330 275 larGdadvylrlptklykekiWDhaaGaviveeaGGvvtDaagkpLDfs.kGrtLeldkGviaasgkvle 343
                  ++ G+ d yl+++    k k+WD  aG  +++  GG  tD +g+ L +  k   L    G i a  +  +
  MMETSP1174-20130828|15110_1 212 VTAGQVDAYLHVT----KSKVWDTCAGDAMIHAIGGKLTDTTGQTLKYNpKTPVLT--LGFIGAGTRASH 275
                  5678888888776....56***************************9961233333..466666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1066.33
//
Query:       MMETSP1174-20130828|15109_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-18   64.6   0.4    5.5e-18   63.2   0.3    1.5  1  TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
    0.00029   18.5   0.1    0.00053   17.7   0.1    1.4  1  TIGR01935 NOT-MenG: RraA family


Domain annotation for each model (and alignments):
>> TIGR02798  ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.3   2.7e-21   5.5e-18      14     196 ..      46     242 ..      37     249 .. 0.80

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 2.7e-21
    TIGR02798  14 avdklaklgvatvheamgrvgl...lkpylrpiytgakvagsavtvllqp...........gdnwmlhvaaeqlkegdvvvaavtaesedgyfgdllatslqargargliidagvrdvrdlkemdfpvwskaisak.gtvkatlgsvnipvvvanalvnpgdvvvadddgvvvvpaakaeavleaaqareaneedkrv 196
                   + +l k+ + +v +a+  +g    +    rp+  g k  g+avtv   p           g     +va e   + +++v+a+  + e    gd+    l  r + g++ d+ vrd  ++    fpv+s + +ak g       + n  + + n+ v pgd ++ d+dgvvv+p++k+e+vl+ a++re+ e   ++
  MMETSP1174-20130828|15109_1  46 ILAELGKCSTQAVVDALWVMGYpqcMIEGARPLAPGMKCVGNAVTVRFVPhrpdiqadkpaGPLSPEYVAFEMCGPNEILVMASIGPWE-SVGGDIKFLRLAQRQVGGIVTDGSVRDTDEIIGYGFPVFSFSTTAKqGPAVMQPWACNDVITCGNVPVRPGDAILGDQDGVVVIPQSKIEEVLQVAEEREEVEMIIKQ 242
                  5667888888888888665555111555679***************9876222222111112223458****************99976.578*************************************99887637666677789999*****************************************9976555 PP

>> TIGR01935  NOT-MenG: RraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.6e-07   0.00053      81     149 ..     148     217 ..     120     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.6e-07
    TIGR01935  81 ngWeGvivnGavrdvaelaeldlGvkalaasPlksek.kgaGevdvpvtlagvtikpgeyvyaDedGilv 149
                   +  G++  G+vrd++e+ +    v +++++  +     +    +  +t ++v ++pg+ + +D+dG++v
  MMETSP1174-20130828|15109_1 148 RQVGGIVTDGSVRDTDEIIGYGFPVFSFSTTAKQGPAvMQPWACNDVITCGNVPVRPGDAILGDQDGVVV 217
                  45679***********************99888765414445677789********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1191.67
//
Query:       MMETSP1174-20130828|15111_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1858.85
//
Query:       MMETSP1174-20130828|15113_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1174-20130828|15114_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   64.3   0.0    2.9e-18   63.7   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
    1.1e-16   58.6   0.0      2e-16   57.8   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.2e-15   55.1   0.0    2.3e-15   54.2   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    9.5e-13   45.8   0.0    1.7e-12   45.0   0.0    1.4  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.2e-09   36.3   0.0    2.2e-09   35.5   0.0    1.4  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      1e-06   27.0   0.0      2e-06   26.0   0.0    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    7.9e-05   20.6   0.0    0.00013   19.9   0.0    1.3  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
     0.0029   15.6   0.0     0.0066   14.5   0.0    1.6  1  TIGR02183 GRXA: glutaredoxin, GrxA family
     0.0031   15.6   0.0     0.0063   14.6   0.0    1.5  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
  ------ inclusion threshold ------
      0.056   11.6   0.0      0.092   10.9   0.0    1.3  1  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   7.1e-21   2.9e-18       1      71 [.     254     322 ..     254     339 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 7.1e-21
    TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddl 71 
                  Vv+fs ++Cp+ck+ak+lL+++ v+  + v+eld+ ++g +l++ L   tg+++VP+i+i+g+ iGG +d 
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDLLDDKGVD--YTVLELDEDSDGGALRARLGARTGRTSVPSIWISGEYIGGLNDG 322
                  89******************999**..****************************************9883 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   4.9e-19     2e-16       1      78 [.     254     337 ..     254     339 .. 0.93

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 4.9e-19
    TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk...eareemierskgrrtvPQifigdvhvGGcdd....LlaleregkLdk 78 
                  vv+++ +sCp+c+rAk lL++kgv+++ +e+d+d+   ++r+++ +r+ gr++vP i+i  + +GG +d    L+ l+++g+Ld+
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSdggALRARLGART-GRTSVPSIWISGEYIGGLNDgnpgLVPLDEAGELDS 337
                  799*****************************99877789999*****.7****************9988888999999999986 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   5.6e-18   2.3e-15       8      72 ..     252     320 ..     246     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 5.6e-18
    TIGR02190   8 esvsvftkpGCPfCakakavLkekGldfeeivLgkdirtrslr....avtGattvPqvfinGkliGgsd 72 
                    v++f+   CPfC +ak++L +kG+d+  + L++d  + +lr    a tG+t+vP ++i G++iGg +
  MMETSP1174-20130828|15114_1 252 SPVVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDGGALRarlgARTGRTSVPSIWISGEYIGGLN 320
                  5699********************************999876622226799***************976 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   4.2e-15   1.7e-12       3      77 ..     247     321 ..     245     339 .. 0.95

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 4.2e-15
    TIGR02189   3 rlvsekavvifskssCClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGglee 77 
                  ++++ ++vv+fs +sC ++  +k Ll + Gv+ +v eld+++++  + + l + +++++vP +++ G+++Ggl++
  MMETSP1174-20130828|15114_1 247 NAIAASPVVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDGGALRARLGARTGRTSVPSIWISGEYIGGLND 321
                  568899******************************************9999999*****************986 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   5.4e-12   2.2e-09       2      63 ..     254     318 ..     253     322 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 5.4e-12
    TIGR02196   2 vkvYttpwCppCkkakeyLkskgiafeeidvekdsaa...aeellkklgqrsvPvivigekivvG 63 
                  v +++ ++Cp Ck+ak+ L  kg+++  ++ ++ds     +++l  ++g+ svP i i ++ + G
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDGgalRARLGARTGRTSVPSIWISGEYIGG 318
                  899**************************99999853223899***************9887766 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.8e-09     2e-06       2      56 ..     254     310 ..     253     328 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 4.8e-09
    TIGR02200   2 vtvYatswCgyCaslkrtLdkdgaeYevvdiekdeeaadyvk..svndGnktvPtVk 56 
                  v ++  + C++C+++k  Ld +g++Y+v ++++d ++++         G   vP + 
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDGGALRArlGARTGRTSVPSIW 310
                  5688999***************************98877543123455777787765 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.1e-07   0.00013       3      82 ..     243     320 ..     241     340 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.1e-07
    TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledee...ireelkeysnWPtiPqlyvkgelvGGcd 82 
                  e++++ ++ ++vv++     ++ +C f ++a ++l+  gv+++ +++ ed++   +r++l   +    +P ++++ge++GG +
  MMETSP1174-20130828|15114_1 243 ERLDNAIAASPVVMF-----SFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDggaLRARLGARTGRTSVPSIWISGEYIGGLN 320
                  778899999999998.....6999***********************999855559************************964 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.6e-05    0.0066       2      73 ..     254     321 ..     253     324 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.6e-05
    TIGR02183   2 vvifGrpgcpycvrakqlaeklakeladfefryvdihaeG.iskadlektvGkpvetvpqifvdekavGGctd 73 
                  vv+f   +cp+c rak+l   l ++  d+    +d  ++G   +a l  + G++  +vp i++  + +GG  d
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDL---LDDKGVDYTVLELDEDSDGgALRARLGARTGRT--SVPSIWISGEYIGGLND 321
                  799**************9...556777888888888777515688899999985..79999999999999766 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.5e-05    0.0063       1      39 [.     254     292 ..     254     320 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.5e-05
    TIGR02194   1 itvysknnCvqCkatkkaleeqniafeeinideqpeavd 39 
                  ++++s   C  Ck +k  l+++++++   ++de+++   
  MMETSP1174-20130828|15114_1 254 VVMFSFTSCPFCKRAKDLLDDKGVDYTVLELDEDSDGGA 292
                  5789999***************************98543 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022     0.092       3      34 ..     256     287 ..     254     290 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00022
    TIGR01617   3 lygipncttckkarrwLeangieyeeidlked 34 
                  +++  +c  ck+a+  L+++g++y+  +l ed
  MMETSP1174-20130828|15114_1 256 MFSFTSCPFCKRAKDLLDDKGVDYTVLELDED 287
                  67899********************9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1198.05
//
Query:       MMETSP1174-20130828|15116_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|15118_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|15119_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 481.58
//
Query:       MMETSP1174-20130828|15122_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.65
# Mc/sec: 268.04
//
Query:       MMETSP1174-20130828|15124_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 296.17
//
Query:       MMETSP1174-20130828|15121_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1212.14
//
Query:       MMETSP1174-20130828|15123_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 763.40
//
Query:       MMETSP1174-20130828|15128_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.7   0.3       0.11   10.2   0.0    1.9  3  TIGR02607 antidote_HigA: addiction module antidote protein, HigA family


Domain annotation for each model (and alignments):
>> TIGR02607  antidote_HigA: addiction module antidote protein, HigA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.4   1.6e+03      13      22 ..      35      44 ..      30      46 .. 0.78
   2 ?   -3.9   0.0      0.67   2.7e+03      59      70 ..      60      69 ..      58      74 .. 0.67
   3 ?   10.2   0.0   2.8e-05      0.11      42      72 ..     120     150 ..     114     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.4
    TIGR02607 13 eefLepLgls 22
                 ++fL++Lg +
  MMETSP1174-20130828|15128_1 35 NDFLQELGFE 44
                 7899999976 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.67
    TIGR02607 59 lgtsaefWLnlQ 70
                 ++++ + WL  Q
  MMETSP1174-20130828|15128_1 60 FDEDHDSWL--Q 69
                 667778887..4 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 2.8e-05
    TIGR02607  42 ngraaitadmAlrLakalgtsaefWLnlQaa 72 
                  + ++a+  ++AlrL++  + +  +W  lQ a
  MMETSP1174-20130828|15128_1 120 KSKEAVWKEVALRLSQTRNGTRVMWRALQVA 150
                  56789999*********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 829.06
//
Query:       MMETSP1174-20130828|15125_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   39.0   0.9    1.4e-10   39.0   0.6    2.2  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.2e-06   24.2   1.8    2.2e-06   24.2   1.3    1.7  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.6   6.7e-14   1.4e-10       1      68 [.      59     124 ..      59     145 .. 0.89
   2 ?   -6.2   4.2         2   4.1e+03     187     211 ..     340     364 ..     311     369 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 6.7e-14
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfgha 68 
                  d+Y+ L  + + +e+++kk Y kl   yHPD+n+   +++e f+ i++Ay vLs  + r+++Dq   +
  MMETSP1174-20130828|15125_1  59 DHYQALRSKSSDNEAQLKKNYLKLCLLYHPDKNR--VDTSELFQCISRAYAVLSAASNRRKFDQKYAE 124
                  899***9999999********************9..899************************94333 PP

  == domain 2    score: -6.2 bits;  conditional E-value: 2
    TIGR02349 187 qtCseCkGeGkiikekCkeCkGkgr 211
                    C +C      +k+ C+ C ++++
  MMETSP1174-20130828|15125_1 340 WCCIQCTEMNDCTKQSCRGCGSSKK 364
                  4688888888889999999987765 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   1.3     1e-09   2.2e-06       3      66 ..      59     122 ..      57     126 .. 0.91
   2 ?   -2.6   0.9      0.13   2.7e+02      91     127 ..     302     338 ..     296     355 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1e-09
    TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD.ky 66 
                  D+y  L  +   +e ++kk + kL   yhPD+n+  d  ++f+ i  a+ vLs    r ++D ky
  MMETSP1174-20130828|15125_1  59 DHYQALRSKSSDNEAQLKKNYLKLCLLYHPDKNR-VDTSELFQCISRAYAVLSAASNRRKFDqKY 122
                  899999999999999*****************98.68999********************99455 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.13
    TIGR03835  91 ieksdefddltdddkkskkkkkkkkkgwfwakskeee 127
                  i +s  +   + ++k s k +k+kkkg   +k+ ++ 
  MMETSP1174-20130828|15125_1 302 ISRSSSMPTSSRKNKSSSKPEKQKKKGTVRSKAADKT 338
                  5566666666678899999999999999877764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|15129_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 220.88
//
Query:       MMETSP1174-20130828|15130_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 384.32
//
Query:       MMETSP1174-20130828|15132_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-203  675.8   0.0   2.7e-203  675.5   0.0    1.0  1  TIGR00763 lon: ATP-dependent protease La
    9.7e-24   81.7   0.7    3.6e-22   76.5   0.0    2.5  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
    1.4e-22   77.8   0.0    4.6e-20   69.5   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
    1.2e-21   74.7   0.3    1.1e-19   68.3   0.0    2.3  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    2.4e-11   40.5   0.0    4.4e-11   39.6   0.0    1.3  1  TIGR02653 Lon_rel_chp: conserved hypothetical protein
    1.5e-10   37.8   0.0    3.6e-10   36.5   0.0    1.5  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.2e-09   35.3   0.1      2e-07   27.9   0.0    2.1  2  TIGR00416 sms: DNA repair protein RadA
    8.7e-06   22.1   0.5    2.3e-05   20.7   0.0    1.7  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    1.1e-05   22.5   0.0    4.5e-05   20.4   0.0    1.8  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.4e-05   21.9   0.0    5.1e-05   20.0   0.0    1.8  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    0.00014   19.0   0.0    0.00022   18.3   0.0    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    0.00015   18.1   0.0    0.00022   17.5   0.0    1.2  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    0.00016   18.2   0.0      0.084    9.2   0.0    2.7  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    0.00047   16.4   0.0    0.00076   15.7   0.0    1.4  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    0.00051   17.6   0.1     0.0019   15.7   0.0    1.9  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0011   16.6   0.1      0.081   10.4   0.1    2.9  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0025   14.9   0.0     0.0045   14.1   0.0    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0026   14.9   0.0     0.0043   14.1   0.0    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
     0.0027   14.2   0.0     0.0039   13.6   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0046   14.3   0.1      0.014   12.7   0.0    1.8  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
     0.0069   14.2   0.0      0.011   13.5   0.0    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0076   13.1   0.1      0.018   11.9   0.0    1.5  1  TIGR02881 spore_V_K: stage V sporulation protein K
  ------ inclusion threshold ------
      0.013   12.0   0.0      0.027   11.0   0.0    1.5  1  TIGR03689 pup_AAA: proteasome ATPase
      0.018   11.8   0.0      0.078    9.8   0.0    1.9  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      0.028   11.7   0.0      0.051   10.9   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  675.5   0.0  1.7e-205  2.7e-203     315     791 ..       8     503 ..       3     507 .. 0.93

  Alignments for each domain:
  == domain 1    score: 675.5 bits;  conditional E-value: 1.7e-205
    TIGR00763 315 ldlkrakeiLdedHyglkkvKeRilEylavkklr.kklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlg.ssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsidtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeveisdealkelikkYtreaGVRnLekqiekilRkaalklveekekkk....eaeeekeeae.lkkeekesveideenlkkylgkpvfesekldeet..kvGvvmGLawtsvGGsvlyiEttlvegkkgeleltGqLgdvmkESaqialtyvraileekeien...........kffekadihlHvPeGatpKDGPSAGvtlvtallSllldkkvrkdvamtGEltLtGkvlpigglkeKviaAkrsgiktiilPeknrrdleelpenvkedleillvkeleevl 791
                  +dl+ +++iLd dH+gl++vK Ri+E++av+ l+ +k++g+il lvGPPGVGKtSl++siA+ lnrkf r+slGG++D+aei+GHRrtY+Ga+PG +iq+++++k +nP+illDEiDKlg  ++rGdPa+aLLEvLDpeqN++F DhYl+vp+Dls V+f+ataNs+dti ep+ldRmEv+e+sgY+e +K++ia +yL+p++l+ +gl ++++++  e+l  l ++YtreaGVR Le++i++++R +a++ v+  ++++      e   e++     +e ++v++++enl+ +lg+p++++e+++ +t  ++Gv++GLawt +GG++l+iE ++ +g +g+++ltGqLgdvmkESa i  t+vr+ ++ ++               + +++d+hlHvP Ga+pKDGPSAGv++v+al+Sll++ +v+ dvamtGE tL+G+v+p+gg+++Kv+aA+r g++++++P +nr dl+elpe+v+e + +  v++l e +
  MMETSP1174-20130828|15132_1   8 VDLATVQKILDDDHHGLDHVKRRIVEFVAVSGLTpHKTQGAILLLVGPPGVGKTSLGRSIASCLNRKFARMSLGGVHDEAEIRGHRRTYIGAMPGAVIQAIRRAKSHNPVILLDEIDKLGmGGIRGDPAAALLEVLDPEQNSTFVDHYLNVPYDLSGVVFIATANSLDTISEPMLDRMEVVEVSGYTESDKVSIATRYLLPRQLSVHGLTDKDLSLPTETLRVLTSSYTREAGVRALERRIAALCRSVAVDKVKLIQQSHddvrTGEAIPEDVPeRLCQEGQQVVMTTENLESVLGVPRYDHESAETTTilPPGVSTGLAWTRTGGELLFIECAMSAG-TGGVQLTGQLGDVMKESAMIGVTFVRTHADLLASMFhhigegdnpflALDASTDLHLHVPSGAVPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLDELPEDVRESMRFDCVTTLIEAI 503
                  79****************************99873689*********************************************************************************9778******************************************************************************************************************************98887755544334445555566652567788999*******************9998875589***********************99.**************************99876554445678899988888899************************************************************************************************9999887655 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.035       5.8      90     106 ..      51      67 ..      36      79 .. 0.81
   2 ?   -2.5   0.0       1.9   3.1e+02     139     187 ..      75     126 ..      68     128 .. 0.71
   3 !   76.5   0.0   2.2e-24   3.6e-22     426     510 ..     397     482 ..     289     507 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.035
    TIGR02902  90 iiyGppGvGktaaarlv 106
                  ++ GppGvGkt+  r +
  MMETSP1174-20130828|15132_1  51 LLVGPPGVGKTSLGRSI 67 
                  578********988865 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.9
    TIGR02902 139 iadpliGsvhdpi.yqGaGklGlaGipqpkaGavtka..hGGvlfideiGel 187
                   a   +G vhd    +G  +  +  +p     a+ +a  h  v+++dei +l
  MMETSP1174-20130828|15132_1  75 FARMSLGGVHDEAeIRGHRRTYIGAMPGAVIQAIRRAksHNPVILLDEIDKL 126
                  5556678888765256777777777888888887654339999999999876 PP

  == domain 3    score: 76.5 bits;  conditional E-value: 2.2e-24
    TIGR02902 426 dydihinfpgg.ipvdGpsaGvaiavaiysalkkvpidnkvaltGeislnGlvkpvGGvsskieaakkaGakkviipkenyqevle 510
                    d+h++ p+g +p dGpsaGvai++a+ s l+ +p++  va+tGe +l+G v pvGG+ +k+ aa++ G+++v++p  n ++  e
  MMETSP1174-20130828|15132_1 397 STDLHLHVPSGaVPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLDE 482
                  5699999985538******************************************************************9887654 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0047      0.77      39      63 ..      49      73 ..      31      94 .. 0.86
   2 !   69.5   0.0   2.8e-22   4.6e-20     442     594 ..     338     508 ..     321     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0047
    TIGR00764 39 nvlliGePGvGksmlakamaellpk 63
                  +ll+G PGvGk+ l++++a  l +
  MMETSP1174-20130828|15132_1 49 ILLLVGPPGVGKTSLGRSIASCLNR 73
                 5689****************99876 PP

  == domain 2    score: 69.5 bits;  conditional E-value: 2.8e-22
    TIGR00764 442 vapaaskeeGkiivtgklgeiakeavlnvsalikkykge..................diskkdihiqflqtyegveGdsasisvatavisaleeiPvkqdvaltGslsvrGevlpvGGvtekieaaieaGikkviiPksnekdv.llekekekkieiiPverldevlevalv 594
                  ++ a+s   G + +tg+lg++ ke+ +   ++++ +                     d s +d+h+         +G sa ++++ a++s l +iPv+ dva+tG   +rG v+pvGG+ +k+ aa + G+++v++P  n +d+  l ++ ++ ++   v +l e + v+++
  MMETSP1174-20130828|15132_1 338 IECAMSAGTGGVQLTGQLGDVMKESAMIGVTFVRTHADLlasmfhhigegdnpflalDAS-TDLHLHVPSGAVPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLdELPEDVRESMRFDCVTTLIEAIGVIFD 508
                  567889999999************9988777777665557889999999*9999976655.79999999999999*******************************************************************983467788888888888888887777765 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012         2     178     194 ..      50      66 ..      35      87 .. 0.85
   2 !   68.3   0.0   6.4e-22   1.1e-19     511     613 ..     398     505 ..     286     507 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.012
    TIGR02903 178 iilyGppGvGkttaarl 194
                  ++l GppGvGkt+  r 
  MMETSP1174-20130828|15132_1  50 LLLVGPPGVGKTSLGRS 66 
                  5789********98874 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 6.4e-22
    TIGR02903 511 ydihvnviGGG.ridGpsaGaaitlvilsalldkpirqdvaitGeislrGkikpvGGifekiyGakrkgiktvvipeenlkdv...pqglk.dievkavktieellei 613
                   d+h+ v  G    dGpsaG ai+ +++s l   p++ dva+tGe +lrG++ pvGGi +k+  a+r g+++vv+p  n+ d    p++++  ++   v+t+ e++ +
  MMETSP1174-20130828|15132_1 398 TDLHLHVPSGAvPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLdelPEDVReSMRFDCVTTLIEAIGV 505
                  58888886655268*****************************************************************98761115544313556666766666655 PP

>> TIGR02653  Lon_rel_chp: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.7e-13   4.4e-11     474     656 ..     299     491 ..     291     506 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2.7e-13
    TIGR02653 474 esfvsvpeeGGsklipagllkpGvvylvtaaesGkvGlyrfevqvvaGsGklkvsGlGsetaakesikvafdylkgnlkrisasak.f...........sekdyhlevvdllntgvsteaslaalialisallkrsvqeqmvilGeltlgGvvkavedlaeslqlaldsGakrvllplssasdiatvpaelfskf 656
                  es ++vp    +   ++ +l pGv    + + +G   l  +e  ++aG+G  +++G      +kes   +  ++++++  ++   + +             +d hl+v      + +  a++a++ al+s l   +vq ++++ Ge tl G v +v  + +++  a   G ++v++p+ ++sd+ ++p ++ + +
  MMETSP1174-20130828|15132_1 299 ESVLGVPRYDHESAETTTILPPGVSTGLAWTRTGGELL-FIECAMSAGTGGVQLTG-QLGDVMKESAMIGVTFVRTHADLLASMFHhIgegdnpflaldASTDLHLHVPSGAVPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSDLDELPEDVRESM 491
                  56778888888888889999999999999999987655.59***************.67789************9998766543221211111111222457899999998888899999********************************************************************9997755 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   2.2e-12   3.6e-10     447     605 ..       9     172 ..       3     182 .. 0.79
   2 ?   -2.2   0.0       1.1   1.8e+02     683     713 ..     225     254 ..     211     262 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.2e-12
    TIGR02639 447 kLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavr..knPyavlLlDeiek.....ahpDilnilLqvmD...yatLtDnsGrk.adfrnvilimtsn 605
                   L++++k L +  +G d++ +++v+ +    +Gl+ +++  + +l vGp GvGkt l +++a+ l+ ++ r+ +      h  + + G    y+G   G  + +a+r  k+ + v+LlDei+k        D    lL v+D   ++t+ D+  +   d   v++i t+n
  MMETSP1174-20130828|15132_1   9 DLATVQKILDDDHHGLDHVKRRIVEFVA--VSGLTPHKTQGAILLLVGPPGVGKTSLGRSIASCLNRKFARMSLGG---VHDEAEIRGHRRTYIGAMPGA-VIQAIRraKSHNPVILLDEIDKlgmggIRGDPAAALLEVLDpeqNSTFVDHYLNVpYDLSGVVFIATAN 172
                  688999999999*************985..67***99999999****************************99876...57779999********88765.5678883346789********933322345777888888874444556666543325666666666666 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.1
    TIGR02639 683 ddaikylaekgydeefGarelkrvieeeikk 713
                   +++++ +  +y++e G+r l+r i+   ++
  MMETSP1174-20130828|15132_1 225 TETLRV-LTSSYTREAGVRALERRIAALCRS 254
                  455544.4568************99876555 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0094       1.5      76     121 ..      27      74 ..       4      92 .. 0.72
   2 !   27.9   0.0   1.2e-09     2e-07     355     436 ..     397     479 ..     390     500 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0094
    TIGR00416  76 fssglseldrvlG..GGivkGsliliGGdPGiGkstlllqvaaqlakn 121
                  ++  + e+  v G      +G+++l+ G PG+Gk+ l   +a+ l ++
  MMETSP1174-20130828|15132_1  27 VKRRIVEFVAVSGltPHKTQGAILLLVGPPGVGKTSLGRSIASCLNRK 74 
                  555555555554411234689***************998888888766 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 1.2e-09
    TIGR00416 355 kqdvflnv.aGGvkveepavdlalvialvssfrdrkldqklvilGevglaGeirevssleerlkeaaklGfkkaivPkansdk 436
                  + d +l+v +G v  + p++ +a+v+alvs +   +++ ++++ Ge +l G++ +v  ++ ++  a + G ++++vP  n ++
  MMETSP1174-20130828|15132_1 397 STDLHLHVpSGAVPKDGPSAGVAIVAALVSLLSGIPVQGDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSD 479
                  5688888856789999*************************************************************999764 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.4e-07   2.3e-05     569     679 ..      18     125 ..       3     129 .. 0.75
   2 ?   -1.3   0.1      0.63     1e+02     372     435 ..     188     255 ..     176     296 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.4e-07
    TIGR03345 569 vGqdealeaiaerir..tarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRr.kPy.svvLLDevek 679
                     +++l+++++ri   +a  gl+  k   ++ llvGp GvGkt    ++A  l   ++++  + +      H  +++ G    Y+G   G v+  A+Rr k +  v+LLDe++k
  MMETSP1174-20130828|15132_1  18 DDDHHGLDHVKRRIVefVAVSGLTPHKTQGAILLLVGPPGVGKTSLGRSIASCL---NRKFARMSL---GGVHDEAEIRGHRRTYIGAMPGAVI-QAIRRaKSHnPVILLDEIDK 125
                  3456789999998872245568887777777999******************99...566665554...467888999*********9888876.67877344426********9 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.63
    TIGR03345 372 veildeavkaavelsaRYisgRqL.....PDkavsllDtAcarvalsqkatPaeledlekeiealeael 435
                  ve++  + ++ v++++RY+  RqL      Dk +s l t + rv  s  +  a +++le++i+al + +
  MMETSP1174-20130828|15132_1 188 VEVSGYTESDKVSIATRYLLPRQLsvhglTDKDLS-LPTETLRVLTSSYTREAGVRALERRIAALCRSV 255
                  55555555677889999999999722222577777.578888888888888888888888888765544 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-07   4.5e-05       5      60 ..      20      77 ..      16      91 .. 0.73
   2 ?   -1.2   0.0       1.1   1.7e+02     127     170 ..     162     204 ..     155     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.8e-07
    TIGR00635  5 efiGqekvkeklqlfikaa..kkrkealdhvllyGPPGlGkttlakiiakelgvklki 60
                 ++ G ++vk+++  f+  +    +k++   +ll+GPPG+Gkt+l + ia+ l+ k   
  MMETSP1174-20130828|15132_1 20 DHHGLDHVKRRIVEFVAVSglTPHKTQGAILLLVGPPGVGKTSLGRSIASCLNRKFAR 77
                 566777777777644444411556667777899*****************99988755 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
    TIGR00635 127 lapftlvGattraGkltsPLrdrfgiverlefYseeeleeivkr 170
                  l+   ++  +    ++++P+ dr  +ve +  Y+e++  +i +r
  MMETSP1174-20130828|15132_1 162 LSGVVFIATANSLDTISEPMLDRMEVVE-VSGYTESDKVSIATR 204
                  55556666667788999******99886.566677766666655 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.1e-07   5.1e-05      57     162 ..      20     128 ..       4     183 .. 0.69
   2 ?   -1.2   0.0      0.83   1.4e+02     305     352 ..     282     329 ..     249     354 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.1e-07
    TIGR01241  57 dvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsis..Gs.dfve......mfvGvGasrvrDlfeqakknaPciifiDeiDavGr 162
                  d  G+d +k+ +ve+v      + ++  Ga     +llvGpPG+Gkt l +++a   ++ f ++s  G  d  e       ++G     v     +ak++ P  i++DeiD +G 
  MMETSP1174-20130828|15132_1  20 DHHGLDHVKRRIVEFVAVSG-LTPHKTQGAI----LLLVGPPGVGKTSLGRSIASCLNRKFARMSlgGVhDEAEirghrrTYIGAMPGAVIQAIRRAKSHNPV-ILLDEIDKLGM 128
                  55666666666666665432.1222222332....589***********************998842322222222222246776667899999*******95.679****9885 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.83
    TIGR01241 305 rvisekekklvayheaGhalvgllvkeadkvkkvtiiprGqalGvtls 352
                    + ++ +++v   e   +++g+   +++  +  ti+p G + G++++
  MMETSP1174-20130828|15132_1 282 ERLCQEGQQVVMTTENLESVLGVPRYDHESAETTTILPPGVSTGLAWT 329
                  4566777888888899999999999999999*************9986 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06   0.00022     159     228 ..      50     127 ..      23     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
    TIGR01242 159 vllyGppGtGktllakavaeetnatfirv....vg..sel...vkkyiGeGarlvrevfklakekapsiifideidaia 228
                  +ll GppG+Gkt l +++a+  n  f r+    v   +e+    + yiG     v + ++ ak   p i ++deid ++
  MMETSP1174-20130828|15132_1  50 LLLVGPPGVGKTSLGRSIASCLNRKFARMslggVHdeAEIrghRRTYIGAMPGAVIQAIRRAKSHNPVI-LLDEIDKLG 127
                  6899***********************9843333322333322578****999999999******9965.68****875 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.3e-06   0.00022     586     679 ..      38     126 ..      14     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.3e-06
    TIGR03346 586 aglsdPnrPigsfl.flGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkp..ysvvlldeveka 679
                  +gl+ P++  g+ l ++Gp GvGkt l +++a+ l   ++++ r+ +      h  a + G    y+G    G++ +a+rr      v+llde++k 
  MMETSP1174-20130828|15132_1  38 SGLT-PHKTQGAILlLVGPPGVGKTSLGRSIASCL---NRKFARMSLGGV---HDEAEIRGHRRTYIGAMP-GAVIQAIRRAKshNPVILLDEIDKL 126
                  5554.777777765166*****************9...577888877665...666778899999999766.566788988541146********95 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00051     0.084     211     235 ..      47      71 ..      11      78 .. 0.81
   2 !    5.9   0.0    0.0054      0.89      69     141 ..     409     479 ..     331     501 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00051
    TIGR00368 211 ghnllllGPPGsGktllakrlqgll 235
                  g  lll+GPPG Gkt l + + + l
  MMETSP1174-20130828|15132_1  47 GAILLLVGPPGVGKTSLGRSIASCL 71 
                  55699************99998877 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0054
    TIGR00368  69 lkkeGgrfdlpiaigilaaseqldakkldeylllgelaldGklravkgvlpaiaaakkselkfiivakenaee 141
                  ++k+G++  ++i  +++     +  +  +++ + ge +l G++  v g+   ++aa++ +++ ++v+  n ++
  MMETSP1174-20130828|15132_1 409 VPKDGPSAGVAIVAALVSLLSGIPVQ--GDVAMTGEATLRGRVMPVGGIRDKVLAAHRGGVRHVVVPVRNRSD 479
                  67777777777777777666666554..6899************************************99865 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.6e-06   0.00076     490     606 ..      50     180 ..      11     291 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.6e-06
    TIGR01243 490 vllfgppgtgktllakavatesganfi..avrg....peils...kwvgesekaireifrkarqaapaiifldeidaia..pargadlsea..vtdrivnqllte..ldgleensdvvviaatnrpdildpa 606
                  +ll gppg gkt l +++a+  +  f   ++ g     ei      ++g    a+ + +r+a+   p +i+ldeid +     rg        v d   n  + +  l+   + s+vv ia++n  d +   
  MMETSP1174-20130828|15132_1  50 LLLVGPPGVGKTSLGRSIASCLNRKFArmSLGGvhdeAEIRGhrrTYIGAMPGAVIQAIRRAKSHNP-VILLDEIDKLGmgGIRGDPAAALleVLDPEQNSTFVDhyLNVPYDLSGVVFIATANSLDTISEP 180
                  5788999999999999999988888851133332222466432225889988999999999988887.5678999976411567765554333666666655544224555677888888888888766433 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05    0.0019      15      83 ..      36     102 ..      26     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.2e-05
    TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldg 83 
                   ++gl+ + + G +l ++Gp G+GKt+L R +a  l+ +  +++l +   +++++ + ++ +y+g  +g
  MMETSP1174-20130828|15132_1  36 AVSGLTPHKTQGAILLLVGPPGVGKTSLGRSIASCLNRKFARMSLGGV--HDEAEIRGHRRTYIGAMPG 102
                  57788888999***********************99999999999954..4555567777888887766 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00049     0.081       4      42 ..      45      83 ..      43     106 .. 0.75
   2 ?    2.7   0.0      0.12        19     154     176 ..     279     301 ..     245     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00049
    TIGR03771  4 dkGellgllGpnGaGkttllrailglikvakGsvkvagk 42
                  +G +l l+Gp G Gkt+l r+i + ++++  ++ ++g 
  MMETSP1174-20130828|15132_1 45 TQGAILLLVGPPGVGKTSLGRSIASCLNRKFARMSLGGV 83
                 57999******************9998877766666554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.12
    TIGR03771 154 elfeelagegtailmtthdlaea 176
                  ++ e l++eg+ ++mtt +l   
  MMETSP1174-20130828|15132_1 279 DVPERLCQEGQQVVMTTENLESV 301
                  56789**************9865 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.7e-05    0.0045      39      62 ..      50      73 ..      30      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.7e-05
    TIGR02397 39 yLfsGprGvGKTsiArilAkalNC 62
                  L+ Gp GvGKTs+ r +A +lN 
  MMETSP1174-20130828|15132_1 50 LLLVGPPGVGKTSLGRSIASCLNR 73
                 5789*******************6 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-05    0.0043       7      56 ..      24      73 ..      19      99 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-05
    TIGR03265  7 ieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekq 56
                 ++++++++ +f a++ +  + ++g ++ l+GP G Gkt+L r ia   ++
  MMETSP1174-20130828|15132_1 24 LDHVKRRIVEFVAVSGLTPHKTQGAILLLVGPPGVGKTSLGRSIASCLNR 73
                 689999**************************************965444 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.4e-05    0.0039     310     336 ..      45      71 ..      19     127 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.4e-05
    TIGR03922 310 qrskHlllaGPPGtGkttiArvvakiy 336
                  ++   lll+GPPG Gkt++ r +a  +
  MMETSP1174-20130828|15132_1  45 TQGAILLLVGPPGVGKTSLGRSIASCL 71 
                  44556899*********9777766543 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   8.6e-05     0.014       4      65 ..      25      87 ..      23     101 .. 0.83
   2 ?   -3.3   0.0       6.6   1.1e+03     155     165 ..     388     398 ..     387     443 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.6e-05
    TIGR00968  4 anvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleG.rdvt 65
                 ++v++r  +f+a+  +  +  +G +  l+Gp G Gk++l r ia   +++  r+ l G +d +
  MMETSP1174-20130828|15132_1 25 DHVKRRIVEFVAVSGLTPHKTQGAILLLVGPPGVGKTSLGRSIASCLNRKFARMSLGGvHDEA 87
                 578999999***********************************9888888888887733444 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 6.6
    TIGR00968 155 depfgaldakv 165
                  d+pf alda  
  MMETSP1174-20130828|15132_1 388 DNPFLALDAST 398
                  56666666643 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     7e-05     0.011     170     212 ..      20      61 ..       6      63 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7e-05
    TIGR03499 170 aeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
                  ++   +++++ + + + v    ++ +++g +++LvGp+GvGKT
  MMETSP1174-20130828|15132_1  20 DHHGLDHVKRRIVEFVAVSGL-TPHKTQGAILLLVGPPGVGKT 61 
                  555555566666665533333.445567779***********9 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00011     0.018      10     121 ..      23     130 ..      14     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
    TIGR02881  10 GleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklf.kelnvlskGhli.everadlvGeyiGhtaqktrevikkal..GGvlfideayslarGG 121
                  Gl++vk+ i e  a++ +  +++        q   +++ G PG Gkt++ r +a+ + +++  +s G +  e+e       yiG     + + i++a+    v+++de   l  GG
  MMETSP1174-20130828|15132_1  23 GLDHVKRRIVEFVAVSGLTPHKT--------QGAILLLVGPPGVGKTSLGRSIASCLnRKFARMSLGGVHdEAEIRGHRRTYIGAMPGAVIQAIRRAKshNPVILLDEIDKLGMGG 130
                  67777777777776666655443........33457889*************9986625777788776642777777778899999999999999886225799****99999998 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016     0.027     219     246 ..      50      77 ..      37     134 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00016
    TIGR03689 219 vllyGPPGcGktliakavanslaekvae 246
                  +ll GPPG Gkt + +++a+ l +k a 
  MMETSP1174-20130828|15132_1  50 LLLVGPPGVGKTSLGRSIASCLNRKFAR 77 
                  6899******************998876 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00048     0.078     119     194 ..      49     126 ..      26     129 .. 0.70
   2 ?   -1.0   0.0      0.88   1.4e+02     344     392 ..     215     262 ..     205     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00048
    TIGR00382 119 nilliGptGsGktllaqtlakeldvpfa.iadattlteaGyvGedveni...llkllqaadydvekaekGiiyideidki 194
                   +ll+Gp G Gkt l +++a  l+  fa ++      ea   G     i      ++qa      k+++ +i +deidk+
  MMETSP1174-20130828|15132_1  49 ILLLVGPPGVGKTSLGRSIASCLNRKFArMSLGGVHDEAEIRGHRRTYIgamPGAVIQAI--RRAKSHNPVILLDEIDKL 126
                  4689*********************99944445555666655554433311023344443..334566677777777776 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.88
    TIGR00382 344 kldevelefeeealkaiakkalerktGarglrsiveellldvmfelpsl 392
                  +l + +l++  e+l+ + + + +r++G r+l   + +l+  v  +  +l
  MMETSP1174-20130828|15132_1 215 GLTDKDLSLPTETLRVL-TSSYTREAGVRALERRIAALCRSVAVDKVKL 262
                  56677888888888755.5678999999999999999999988776554 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00031     0.051      21      49 ..      47      75 ..      27      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00031
    TIGR02640 21 gypvhlrGPaGtGktslalhvakkrdrPv 49
                 g  + l+GP G Gktsl + +a +++r  
  MMETSP1174-20130828|15132_1 47 GAILLLVGPPGVGKTSLGRSIASCLNRKF 75
                 5567799******************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                      244  (0.0594832); expected 82.0 (0.02)
Passed Vit filter:                        93  (0.0226719); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.78u 0.19s 00:00:00.97 Elapsed: 00:00:00.86
# Mc/sec: 816.49
//
Query:       MMETSP1174-20130828|15133_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1174-20130828|15136_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.3   0.1     0.0088   12.8   0.1    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.1e-06    0.0088     258     317 ..     260     323 ..     249     368 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-06
    TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlk......pgkkvklkilRk 317
                  ++   + +v kgs A+ a  ++GDv+lkv +++++++  l++a+++++      + ++v+++i+R+
  MMETSP1174-20130828|15136_1 260 KQSLQIINVEKGSIADVAECREGDVLLKVADQDVSNV--LPSAVMAMMdlrlrgASRSVSIEIMRQ 323
                  4445567788888888888888888888888888764..444444332111111344455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1226.53
//
Query:       MMETSP1174-20130828|15135_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|15139_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 200.11
//
Query:       MMETSP1174-20130828|15140_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1174-20130828|15143_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.52
# Mc/sec: 1159.98
//
Query:       MMETSP1174-20130828|15147_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 283.78
//
Query:       MMETSP1174-20130828|15150_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 349.59
//
Query:       MMETSP1174-20130828|15151_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|15148_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1877.18
//
Query:       MMETSP1174-20130828|15152_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-84  280.7   2.1    2.2e-84  280.2   1.4    1.2  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00075   16.8   0.1     0.0015   15.9   0.1    1.4  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
     0.0048   14.7   0.0     0.0087   13.8   0.0    1.5  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
     0.0073   12.2   0.2      0.012   11.5   0.1    1.3  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
  ------ inclusion threshold ------
      0.011   12.2   5.0      0.085    9.2   0.9    2.3  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
      0.028   12.3   8.5       0.19    9.5   5.9    2.1  1  TIGR03290 CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
      0.088   10.5   2.1        0.2    9.3   0.1    2.3  2  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
        2.1    5.8  10.2         18    2.8   6.2    2.6  2  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.2   1.4   4.3e-87   2.2e-84       1     222 []      48     271 ..      48     271 .. 0.95

  Alignments for each domain:
  == domain 1    score: 280.2 bits;  conditional E-value: 4.3e-87
    TIGR00384   1 vlRfnpdvdek.phlesyevevdektlsvLdaLeqikkeqdaslafRksCReaiCGscavkvngkpkLACktkvedleqllkliieplanlpvikDLvvdleefiekleaikpYlirkeqke.eeeellqtpeeleklkelseCieCglCyssCpakklnee.flGPaalakaarfllDsRDeatkeRlealndkkgvysCttvakCsevCPkevdpasaieklk 222
                  ++R++pd++ + p++++y v++ e+  +vLdaL +ik+eqd+sl+fR+sCRe+iCGsca++++g ++LAC + +++ +++   +i+pl+++ v kDLv d+++f++++++ikp+l ++e++  + +e+lq+ e+++kl+ ++eCi+C++C++sCp++++n + +lGPa+l++a+r++ DsRD++tkeRleal d+  +y+C+t+++Cs++CPk+++p +ai++lk
  MMETSP1174-20130828|15152_1  48 IYRYDPDQEGQkPYISTYPVDTSECGPMVLDALIKIKNEQDSSLTFRRSCREGICGSCAMNIDGTNTLACLSYIKTDNNKPS-KIYPLPHMYVLKDLVPDMSNFYDQYKSIKPWLHTDEKTGpDGAEFLQSKEDRKKLDGMYECILCACCSTSCPSYWWNADqYLGPAVLMQAYRWISDSRDTNTKERLEALDDSFKLYRCHTIMNCSKTCPKHLNPGKAIAHLK 271
                  79****987544***************************************************************9776544.8********************************99877515669*********************************999***********************************************************997 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.9e-06    0.0015      36      63 ..      93     120 ..      74     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.9e-06
    TIGR03198  36 tkvscgigrcgacavlvdgkvanacllm 63 
                   ++sc  g cg+ca+ +dg  + acl  
  MMETSP1174-20130828|15152_1  93 FRRSCREGICGSCAMNIDGTNTLACLSY 120
                  589**********************964 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.7e-05    0.0087      34      63 ..      93     122 ..      72     145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.7e-05
    TIGR03193  34 vkqgcdggecgactvlvdgeprlacltlav 63 
                   ++ c  g cg+c++ +dg  +lacl+  +
  MMETSP1174-20130828|15152_1  93 FRRSCREGICGSCAMNIDGTNTLACLSYIK 122
                  4678*********************98654 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   2.4e-05     0.012      27      61 ..      89     123 ..      75     131 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
    TIGR03311  27 eltsvknGcaeGacGactvlvnGkavkaclftvek 61 
                  +  + +  c eG cG+c + ++G  + acl  ++ 
  MMETSP1174-20130828|15152_1  89 SSLTFRRSCREGICGSCAMNIDGTNTLACLSYIKT 123
                  44456789*********************987655 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.9   0.00017     0.085     396     417 ..     182     203 ..     172     211 .. 0.75
   2 ?    4.1   0.1    0.0058         3     364     393 ..     246     275 ..     231     277 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00017
    TIGR01945 396 aeelnlmDCieCGsCayvCPsk 417
                   +  ++ +Ci C +C+ +CPs 
  MMETSP1174-20130828|15152_1 182 KKLDGMYECILCACCSTSCPSY 203
                  4445678999999999999985 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0058
    TIGR01945 364 aCirCgkCveaCPvsLlPqqlallakaeey 393
                   C    +C+++CP  L+P +  ++ k+e +
  MMETSP1174-20130828|15152_1 246 RCHTIMNCSKTCPKHLNPGKAIAHLKKEMH 275
                  5777789***********998888887765 PP

>> TIGR03290  CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.9   0.00038      0.19       3      73 ..     189     272 ..     187     277 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00038
    TIGR03290   3 acyqcGtctGscPs.........grr...tayrirklirkaklglkdevlsdd.dlwlcttcyecqercPrdvkitdvvkalrn 73 
                   c+ c  c+ scPs         g+     ayr     r++++  + e+l+d  +l+ c t  +c + cP+++++ +++  l++
  MMETSP1174-20130828|15152_1 189 ECILCACCSTSCPSywwnadqylGPAvlmQAYRWISDSRDTNTKERLEALDDSfKLYRCHTIMNCSKTCPKHLNPGKAIAHLKK 272
                  699**********944433333322211133444444466666666788877658*******************9999998876 PP

>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00039       0.2      30      53 ..      87     110 ..      71     127 .. 0.81
   2 ?   -0.2   0.1      0.35   1.8e+02      23      48 ..     173     198 ..     157     204 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00039
    TIGR02008  30 eeeGidlpyscraGacstcaGkvk 53 
                  +++ + +  scr G c +ca  + 
  MMETSP1174-20130828|15152_1  87 QDSSLTFRRSCREGICGSCAMNID 110
                  456677778***********8885 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.35
    TIGR02008  23 eyildaaeeeGidlpyscraGacstc 48 
                  e++  + + + +d  y c   ac + 
  MMETSP1174-20130828|15152_1 173 EFLQSKEDRKKLDGMYECILCACCST 198
                  34434444467999999998887653 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.8   1.9e+03      67      83 ..      56      72 ..      45      72 .. 0.72
   2 ?    2.8   6.2     0.036        18      39      94 ..     185     258 ..     174     272 .. 0.59

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.8
    TIGR01971 67 ekgkrrlkkyeinlgrC 83
                 e +k ++++y +++++C
  MMETSP1174-20130828|15152_1 56 EGQKPYISTYPVDTSEC 72
                 45566788888888888 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.036
    TIGR01971  39 pGeekCiaCelCakvCpaeaikvvkaee..................ekgkrrlkkyeinlgrCifCglCeevCP 94 
                  +G  +Ci C  C + Cp++  + +++                     k++ ++   +  l rC    +C  +CP
  MMETSP1174-20130828|15152_1 185 DGMYECILCACCSTSCPSYWWNADQYLGpavlmqayrwisdsrdtnTKERLEALDDSFKLYRCHTIMNCSKTCP 258
                  47788888888888888776555544444444444445555443211111122223455566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 692.32
//
Query:       MMETSP1174-20130828|15154_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|15156_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.59
# Mc/sec: 467.55
//
Query:       MMETSP1174-20130828|15159_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-56  189.1   2.2      3e-56  188.8   1.5    1.0  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
    6.2e-17   59.1   0.8      1e-16   58.4   0.5    1.3  1  TIGR00831 a_cpa1: Na+/H+ antiporter
  ------ inclusion threshold ------
       0.37    8.1   7.8       0.08   10.3   1.5    2.3  2  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   1.5   2.2e-59     3e-56     196     422 ..       8     236 ..       2     280 .. 0.91

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 2.2e-59
    TIGR00840 196 tivdvvegivsffvvalggllvGvvvgflvalilkftkhir..viepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvsen.eewnwafvvltlvfcviyRvlgvvtlsailnkfr..kvkleikdqlvifyaGlRGAvafaLallldekkveekklfvttvlvvvfltvilqGltikplvevLkvkkkek 422
                  + v v  +i sf++v+lg+++vG ++g+  +++ k+t ++     e  l++l++Y sY +ae + lSgi+al +cgivl +Y  +N+seks+++   + +++++++E ++F+++G+  ++   +ewn++f+v++++fc  +R+++++  s i n  r   +k+++k q+vi +aGlRGA+afaL++ ++e   e+++l+ tt+l +v++t ++ G  ++pl++v+ +k  ++
  MMETSP1174-20130828|15159_1   8 GGVTVPLAIGSFLLVSLGSVFVGTLIGLSCSYLCKHTDIRAypHYEISLLFLFAYGSYAFAEAIELSGIMALFFCGIVLAHYNSYNLSEKSRLATDNICRTVAQMAEYFVFLYMGMGFFTGRfQEWNFTFIVCSILFCLTARIVSTFPFSFIANLRRgeGKKISLKMQVVIWFAGLRGAIAFALSQNMPE---ENRDLYATTTLCIVIFTTVVCGGLTEPLLNVMGMKVMDT 236
                  66777788899***************************99988899************************************************************************9864389******************************999899*****************************...9*****************************998876554 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.5   7.7e-20     1e-16     169     421 ..      10     255 ..       5     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 7.7e-20
    TIGR00831 169 fdpaaavveFvvvavGGilaGlvvgyLvtrllrakiD...epleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvqlpgiiesalkeaevapaaeilalavtavviyaalayvrfltvlkktsnrvlkkktrevGtreklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavvi...Lfsllvqgv...sLpilvkrkevaedserekeeri 421
                  +++  a++ F+ v +G + +G ++g     l  ++ D    p  ei ll+l ++ ++ +ae +++sG++a    g+vl+++     +s +sRl   ++   +  +    vf+++G+      ++ ++ + +     il  +++ +v    +    f+  l+       + + +++ ++ ++v+ +aGlRGai+ a+   +p    +  a      ++f   +v+   L   l++++    ++++v    ++e+s+ e +e++
  MMETSP1174-20130828|15159_1  10 VTVPLAIGSFLLVSLGSVFVGTLIGLSCSYLC-KHTDiraYPHYEISLLFLFAYGSYAFAEAIELSGIMALFFCGIVLAHYNSY-NLSEKSRLATDNICRTVAQMAEYFVFLYMGMGFFTGRFQEWNFTFIV--CSILFCLTARIVSTFPFS---FIANLR-------RGEGKKISLKMQVVIWFAGLRGAIAFALSQNMPEENRDLYATTTLCIVIFT--TVVcggLTEPLLNVMgmkVMDTVVSTSLLPEESDSESDEEL 255
                  677778999*******9999988887777665.44442225889*************************************987.9******************************9988888888766554..456655444444333222...322343.......4567889999**************999999999999888887755555553..33313344445444411256889999999999999888876 PP

>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   5.8e-05      0.08     171     246 ..      13      91 ..       6     102 .. 0.67
   2 ?   -0.2   0.1     0.087   1.2e+02     180     222 ..     175     217 ..     169     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.8e-05
    TIGR00932 171 vllllkvllaflllvllvkyllrpvlrltaeadrs.elatalsLllvlgsal..ladllGlsmalGAFlAGvvlsesey 246
                  +l++ ++ll+ l+ v+++ ++      l  ++d +      +sLl  +++    +a+++ ls +++ F+ G+vl++ + 
  MMETSP1174-20130828|15159_1  13 PLAIGSFLLVSLGSVFVGTLIGLSCSYLCKHTDIRaYPHYEISLLFLFAYGSyaFAEAIELSGIMALFFCGIVLAHYNS 91 
                  556666666666666666666666666666666664333344555545443225********************98665 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.087
    TIGR00932 180 aflllvllvkyllrpvlrltaeadrselatalsLllvlgsall 222
                   +++ ++ ++  +  +l++ + +++++l   ++L +v+ + ++
  MMETSP1174-20130828|15159_1 175 QVVIWFAGLRGAIAFALSQNMPEENRDLYATTTLCIVIFTTVV 217
                  5777888888888999999999999999999999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.80
# Mc/sec: 638.50
//
Query:       MMETSP1174-20130828|15160_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 1102.66
//
Query:       MMETSP1174-20130828|15161_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.55
# Mc/sec: 947.92
//
Query:       MMETSP1174-20130828|15165_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       309  (0.0753291); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 231.98
//
Query:       MMETSP1174-20130828|15163_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 877.18
//
Query:       MMETSP1174-20130828|15167_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    3.8  15.9        2.2    3.6  11.1    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.1   0.00053       2.2     736     878 ..      36     172 ..       3     185 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00053
    TIGR00927 736 gdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegei.eaeeeGeekededegeieakeevevegdedete 878
                   d++ed +s  +++    +  r ++++ +++  ++  ++ s+++ +++  s    eee+eG+ +  r++++ g+ +   ++  + G+ + +  ++++ +e++G++de+e   a++ G   +    g +     +e++g  +e  
  MMETSP1174-20130828|15167_1  36 NDEKEDDSSSTTRNGI--RRARDDDDVSSPA-KPSAPPHYSDTDDDEKRASH-EKEEEEEGDARRRRRDDQSGNEQKGMRR--MMGD-DWSFDKENGTAEPKGKNDEEEEpAAGAAGAAAGAGAAGAATPVGYGERHGSAQEHG 172
                  2333444443333332..3334444555552.23333444444444333333.3467789999999999888776555555..8888.44444556677899998876651677888888887777777767777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.53
# Mc/sec: 535.43
//
Query:       MMETSP1174-20130828|15169_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-06   23.6   1.2    7.6e-05   20.1   0.1    2.1  2  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.9e-08   7.6e-05      12     134 ..      11     131 ..       1     141 [. 0.76
   2 !    2.5   0.0    0.0045        18     170     205 ..     144     179 ..     135     183 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.9e-08
    TIGR01840  12 kralvlalHGCgQtasasvidkg........wkaaAdkYgfvvvaPevtssnssnkCwdwfetehrargtgeveslkqlidavkanysIDpnrvyvtGLSaGggetaVllatypdvfAgaAsnaglpygsa 134
                    ++++ lHG g + + +v ++          +    ++ f+ v+P+ +     ++C ++    +        +++  +i++v++ +  D  rvy++G S Gg      +    +vfA++ ++ g +y  +
  MMETSP1174-20130828|15169_1  11 FSPVLVFLHGRGESGAFDVTNAQslplqlltNSSFSATFPFITVVPQCP-----RECMNYNGWVD-----NVLKDVTIIIHEVVEAHGGDLGRVYLAGQSMGGNGAWMYASQQMNVFAAVVVICGYAYQND 131
                  5678888999998888777777777644433333344555555555544.....45999988888.....44567778999********************************************999876 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0045
    TIGR01840 170 pivsvvhgdaDytVlpgnaeeivdamkkvygatqta 205
                    v+vvh   D ++  ++ +++v+a k v+  +  +
  MMETSP1174-20130828|15169_1 144 TAVGVVHAADDSVIPVEASDTMVNAIKAVHSREGLD 179
                  5689**************************887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.67
# Mc/sec: 492.50
//
Query:       MMETSP1174-20130828|15171_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 183.64
//
Query:       MMETSP1174-20130828|15174_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 738.16
//
Query:       MMETSP1174-20130828|15178_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 750.45
//
Query:       MMETSP1174-20130828|15176_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-37  127.0   0.0    4.2e-37  126.6   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.4e-28   97.1   0.1    3.8e-28   95.7   0.0    1.7  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.7e-14   50.6   0.0    7.3e-14   49.6   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    0.00042   17.8   0.0    0.00088   16.7   0.0    1.5  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.001   15.6   0.0     0.0016   14.9   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0029   15.2   0.0     0.0046   14.6   0.0    1.3  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
      0.042   11.4   0.0      0.078   10.5   0.0    1.4  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   7.2e-40   4.2e-37       2     330 ..      27     370 ..      26     375 .. 0.76

  Alignments for each domain:
  == domain 1    score: 126.6 bits;  conditional E-value: 7.2e-40
    TIGR01130   2 evleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAee.lkkkspkvklakvDateekelaqkygvsGyPtLkifrnge.sssdYnGpReaegivkylkkqsgPaskeletvedlekllek.kevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkde...vvlvkkkkee.......ekeekveeeletdvealekfvkkeslplvgeftketaakifesk..plkvlllnveesk.kk....seel...lekflevakkfkgk..kvkfavadeeefgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgkl 330
                  +v +lt+ +f++  +++ + L+eFYAPWCGHCk+L+P  ++  ee l ++s  +++akvDat +k++++  +v+G+P++k+ ++ge +  +Y+G+R+a+ + k+ ++ + Pa ++l+t++dlek+ e  k  v vg++ +     ++ ++ va++++ ++ +++   ++   +     +++    ++v +k e+       e+++ v+   +t    +++++k  ++plv+e+  +++ k  +    +l+v ++  e+++ ++     +++   +++ +ev +++ g    + f   d  + +  ++++++     p vv+l++   +k+  ++e  +++++  f+k+++ gk+
  MMETSP1174-20130828|15176_1  27 KVQVLTDADFEEK-TSDGFWLAEFYAPWCGHCKRLNPILDEISEEaLVEHS--MNIAKVDATVHKKISESMKVKGFPSIKFRSSGEmEWVNYEGGRKAKDLLKFAERIASPALTTLATKDDLEKFYERtKGGVGVGFIMG---GPSQLWTPVAQAMQAVAYFATLAPETTPESLGLSLEGSvepFIAVVEKGESprlfsglEATDLVDLGDKT--PLIKEWIKGANAPLVNELGPHNFRKLGKLPgkLLVVGIVDPEATEtPAflrgLQTIargIHATTEVEETYDGIkdRYLFGHLDGVQWKDFVRQFNIY-GGLPRVVVLDMPA-EKFYEDSEVNEADEIDTFLKEVFVGKI 370
                  7999*******98.5678*********************998765288888..999******************************999**************************************9677788999995...4567788888888877665554443333333222222200133333343336788887777777766666..57*******************999987665224444444433333333434322221112334455555555367899******************9.77**********8.8998888777789**********9997 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   6.5e-31   3.8e-28       2     102 ..      32     129 ..      31     132 .. 0.92
   2 ?   -2.6   0.0       2.5   1.5e+03      44      85 ..     304     346 ..     297     365 .. 0.59

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 6.5e-31
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                  ++++f+e  +  +  +l efyaPWCGhCk+l P  +++++e   e+ +++iakvdat++k++++++kv+gfP +kf ++g+ e v+yeG+R+a++l +f e
  MMETSP1174-20130828|15176_1  32 TDADFEEKTS--DGFWLAEFYAPWCGHCKRLNPILDEISEEALVEH-SMNIAKVDATVHKKISESMKVKGFPSIKFRSSGEMEWVNYEGGRKAKDLLKFAE 129
                  6677777766..799*************************998876.6**************************************************986 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.5
    TIGR01126  44 kkeeekvkiakvdataekelaskfkvs.gfPtlkffkkgkkep 85 
                  +  +++   +++d  + k+  ++f++  g P + +++   ++ 
  MMETSP1174-20130828|15176_1 304 DGIKDRYLFGHLDGVQWKDFVRQFNIYgGLPRVVVLDMPAEKF 346
                  5555566667777777788888888752477777766655443 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.2e-16   7.3e-14       3      80 ..      33     110 ..      31     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 1.2e-16
    TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelake..leekvkvvKlnvdeeqeiaakygirsiPtlllfkngke 80 
                  +++fee+++++    l +f+A+WCg Ck l P+l+e+++e  +e++++++K++   +++i+++++++  P + +  +g+ 
  MMETSP1174-20130828|15176_1  33 DADFEEKTSDG--FWLAEFYAPWCGHCKRLNPILDEISEEalVEHSMNIAKVDATVHKKISESMKVKGFPSIKFRSSGEM 110
                  56677766655..799**********************99445899**************************99888875 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06   0.00088      48      94 ..      24      73 ..      11      92 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
    TIGR00385 48 lkekvqllta...evlkkgklvLlnvwasWCptCraehplLkelakeglr 94
                  + kvq+lt+   e+ +     L  ++a WC+ C+   p+L e+++e l 
  MMETSP1174-20130828|15176_1 24 NESKVQVLTDadfEEKTSDGFWLAEFYAPWCGHCKRLNPILDEISEEALV 73
                 344555554311123344567899*********************99765 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-06    0.0016     374     442 ..      44     111 ..      25     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-06
    TIGR00424 374 awlvvlyapwcpfcqameasyvelae.klagsgvkvakfradgdqkefakqelqlgsfptillfpkrssr 442
                   wl  +yapwc  c+ ++   +e++e  l  +  ++ak  a  ++k    + ++++ fp+i +       
  MMETSP1174-20130828|15176_1  44 FWLAEFYAPWCGHCKRLNPILDEISEeALVEHSMNIAKVDATVHKKI--SESMKVKGFPSIKFRSSGEME 111
                  5***********************9725899999***9999887764..567888889988776555555 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.8e-06    0.0046      33     105 ..      53     125 ..      16     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.8e-06
    TIGR02187  33 kCeyCeetkqlleelsevs.dklkleiydldteedkekvekykvervPtvileeegskdieirytGiPaGeEfa 105
                   C  C++++ +l+e+se +    +++i ++d+  +k++ e  kv   P++ ++++g +   + y G    +++ 
  MMETSP1174-20130828|15176_1  53 WCGHCKRLNPILDEISEEAlVEHSMNIAKVDATVHKKISESMKVKGFPSIKFRSSG-EMEWVNYEGGRKAKDLL 125
                  599************99886677899***************************999.66678887755555555 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013     0.078      47      79 ..      39      71 ..       3      84 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
    TIGR02738 47 vlledyklvlfyqstCpyChqfapvLkqlsqqt 79
                  +++ + l  fy   C +C++ +p+L + s+++
  MMETSP1174-20130828|15176_1 39 KTSDGFWLAEFYAPWCGHCKRLNPILDEISEEA 71
                 34677778889***************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1113.99
//
Query:       MMETSP1174-20130828|15179_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|15182_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 463.43
//
Query:       MMETSP1174-20130828|15180_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   10.9  59.4    0.00075   15.1  18.1    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1  18.1   1.8e-07   0.00075     252     515 ..     339     603 ..     332     612 .. 0.76
   2 ?    1.4  29.5    0.0026        11     678     918 ..     539     779 ..     530     793 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-07
    TIGR02168 252 eeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieel....ekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallk 515
                  + +++++e+ l+ +++ l+el++ ++e+++++ +  +e++ ++ ++++ +    +   + e+  +e+ +l +q  ++++++e  e+++++le++ + ++ e+ +l  +l ea a+++e  + + e +   e+l ++ + l+ ++++++  ++r+e+ +++ ++ ++ + q ++       k+ + +  + +e +e+le+ ++  ++++e+l  ++++l++++ el +++ a q+ e++  +l++ +e l++ ++ l++ +e++   l+
  MMETSP1174-20130828|15180_1 339 RLSYRSKESLLHDVDSTLAELKALVAERNASVGKFVQEFHVIAPQKDKETDIDGECLISAEKRVEEITRLADQALRSQRRSEIREDQFKRLEKKAKGFSDECMRLTTRLVEADADRKEIDELSLETQVLREQLLKKEKTLKDSMEENKVSQRRVENLMNSESRGVDSQGQPTRRVsrigGKNPKVVPPAPREDSEKLEKAKRDHAQTKEQLFLVQARLNTATVELSRQRDAHQDSEADATRLRQLVEYLQEANDGLSKRNEEM---LA 603
                  55678899999****************************999877665544444555555667899*****************************************999998888887777777766666666666666666666666555555555554444443333333320011455666688999999999999999999999999999999999999999999999999999999999888888777777765443...33 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.0026
    TIGR02168 678 kkeieeleeeieeleekiaelekelkelekeleele...eeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieel.eeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelre.lekkvkelere 918
                  k+  ++ +e++  ++++++ ++ el++ ++++++ e   ++l++l + l+e+++ ls++++e+ +++++  +l +r + l +++eele++ +e +e   +++ +++e+e+e+  +++++++  e l++++++l e++a++  l +e +e+    +   ++ +a+e++ ++l+e+ +    +++++   ++++l++e +el+++l +++k  +  +++la+   +++e ++elr+ l k+++e+ ++
  MMETSP1174-20130828|15180_1 539 KRDHAQTKEQLFLVQARLNTATVELSRQRDAHQDSEadaTRLRQLVEYLQEANDGLSKRNEEMLAESQKMGTLHKRERFLARQVEELEAQNQEINELKVKLR-RAHEVERESRFETEDLKREIEILTDNSSQLGEVRAKIALLTREKKEL----SVELARRQATEDNHDRLNERGRFIpDHHAAETLGSMNDLKKENDELKSQLLRANKLITVDSKNLAQTALKQAECENELRSnLLKTANEKSEK 779
                  333444444444445555555555544444444333000233444444555555566666666666666666666666666666666666666555444443.55555566666666666666666666666666666666555555533....33334444444444444444443313344445556666666666666666666666555555555554444444444443111222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.94
# Mc/sec: 1245.47
//
Query:       MMETSP1174-20130828|15185_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.3  15.8      0.001   14.7   5.9    1.8  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.2    7.1  12.1      0.039   12.0   0.7    2.9  3  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        1.7    5.3  12.6       0.07    9.9   4.4    1.7  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4     0.019        26     437     787 ..      56      72 ..      13     111 .. 0.51
   2 ?   14.7   5.9   7.6e-07     0.001     712     803 ..     168     259 ..     129     269 .. 0.34

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.019
    TIGR02168 437 lkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeie 787
                  +++ +  l+++                                                                                                                                                                                                                                                                                                                                              +++e+e
  MMETSP1174-20130828|15185_1  56 KAAEKDALNQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QKSERE 72 
                  00000000000..............................................................................................................................................................................................................................................................................................................................................000000 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.6e-07
    TIGR02168 712 leeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkal 803
                  l+++ e+l+++ e++ +k+s ++k  + +e+  e+l+++l++l+ + + l+ e ++ ++  +e++++l+  e+ei +l+a++e+ + + ++ 
  MMETSP1174-20130828|15185_1 168 LRNHYEELETQMERAVKKFSMMEKANKVVESANEKLQQQLDSLKGRSSILDVEVSQGQKVNSELKKKLAGLESEIGTLRAQAEERRIQREQA 259
                  22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.38   5.3e+02      78      81 ..      59      62 ..      32      84 .. 0.47
   2 ?   12.0   0.7   2.8e-05     0.039      66     140 ..     132     206 ..      80     210 .. 0.72
   3 ?    2.6   0.8     0.021        29      97     134 ..     205     242 ..     197     265 .. 0.53

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.38
    TIGR02894 78 eslt 81
                 e+ +
  MMETSP1174-20130828|15185_1 59 EKDA 62
                 2111 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 2.8e-05
    TIGR02894  66 akkqrkerkraaesltledviefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieed 140
                    kqrk   +  ++  + ++i+  +++++   ++  lr++ e+l++++e   k+   +ek ++ +++ ++ ++++
  MMETSP1174-20130828|15185_1 132 MEKQRKGVAKNIDDCQIPECIARQNRYRDLADANLPLRNHYEELETQMERAVKKFSMMEKANKVVESANEKLQQQ 206
                  347888888889999***************99999********************99999999999888777765 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.021
    TIGR02894  97 eeaeklrkekeklkeeleslqkrneeLekeleklkkkk 134
                  ++ + l+   + l  e+++ qk n eL+k+l+ l+++ 
  MMETSP1174-20130828|15185_1 205 QQLDSLKGRSSILDVEVSQGQKVNSELKKKLAGLESEI 242
                  33344444444444444555555555555554444433 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.15   2.1e+02     139     165 ..      54      79 ..      21     102 .. 0.54
   2 ?    9.9   4.4   5.1e-05      0.07     122     239 ..     147     263 ..     119     268 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.15
    TIGR01843 139 salraqlesleaqikqleaeleglqaq 165
                  ++ +a++++l +q +++e e e+++a+
  MMETSP1174-20130828|15185_1  54 KKKAAEKDAL-NQTQKSEREKERQDAD 79 
                  2222222222.2333333333334433 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 5.1e-05
    TIGR01843 122 avaelvkeqes..lfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseele.alrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkf 239
                  + +e +++q++  ++ + +  lr+  e+le q+++  ++ + ++    ++++ +e ++e+l+  l++Lk +  +  +e+ + ++   el+++la le+e+  l+a+++e + +++++e + 
  MMETSP1174-20130828|15185_1 147 QIPECIARQNRyrDLADANLPLRNHYEELETQMERAVKKFSMME----KANKVVESANEKLQqQLDSLKGRSSILDVEVSQGQKVNSELKKKLAGLESEIGTLRAQAEERRIQREQAERSS 263
                  55666666654114555555566666666666666666655544....4444455555555413478889999999999999999999999999999999999999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.76
# Mc/sec: 550.53
//
Query:       MMETSP1174-20130828|15188_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-13   45.9   0.0    7.6e-13   45.6   0.0    1.1  1  TIGR02418 acolac_catab: acetolactate synthase, catabolic
    8.6e-11   38.8   0.0    1.1e-10   38.5   0.0    1.1  1  TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type
    3.8e-10   36.6   0.0    4.8e-10   36.2   0.0    1.1  1  TIGR02720 pyruv_oxi_spxB: pyruvate oxidase
    9.2e-10   35.6   0.0    1.3e-09   35.1   0.0    1.1  1  TIGR03393 indolpyr_decarb: indolepyruvate decarboxylase
    6.1e-08   29.3   0.0    7.7e-08   28.9   0.0    1.1  1  TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
    1.5e-05   22.9   0.0    0.00037   18.3   0.0    2.1  2  TIGR03846 sulfopy_beta: sulfopyruvate decarboxylase, beta subunit
    0.00068   16.6   0.0     0.0025   14.7   0.0    1.7  1  TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
  ------ inclusion threshold ------
      0.011   12.1   0.0      0.017   11.5   0.0    1.2  1  TIGR01504 glyox_carbo_lig: glyoxylate carboligase
      0.016   11.7   0.0      0.021   11.4   0.0    1.1  1  TIGR03254 oxalate_oxc: oxalyl-CoA decarboxylase


Domain annotation for each model (and alignments):
>> TIGR02418  acolac_catab: acetolactate synthase, catabolic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.7e-15   7.6e-13     410     526 ..     137     261 ..     127     264 .] 0.87

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.7e-15
    TIGR02418 410 lGvalPWaisaallkPnekvvsvsGdGGflfssmeletavrlklnivhiiWndakynmvelqeekkyk.rssgvdfG.......pvdlvkyaesfGakGlrveskdeleevlkeameveGPvvvd 526
                  +G + P a++aa   Pn++v+    dG  ++s + l t  r +l +  +i  ++ky+++++ ++k+   rs +   G        +d+v  a  +G   ++v++ del + l +a  v+GP +++
  MMETSP1174-20130828|15188_1 137 IGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEILKIEQHKQGLpRSGAATTGlcdigipVIDWVSLAAGLGVPAVKVDTCDELLHHLSHALTVDGPYLIE 261
                  78888********************************************************877664438766544422222435899**********************************997 PP

>> TIGR00118  acolac_lg: acetolactate synthase, large subunit, biosynthetic type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.3e-13   1.1e-10     410     534 ..     135     264 .]     119     264 .] 0.82

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.3e-13
    TIGR00118 410 GtmGfGlPaalGakvakpeetvvavtGdgsfqmnlqelstiveydipvkivilnnellGm..vkqWqelfyeeryset...klaselpdfvklaeayGvkgiriekpeeleeklkealeskepvlldvev 534
                  G++G G P a+Ga  a p+  v++ + dgs + +lq l t ++  + v +vi  n+   +  ++q ++ + +   + t    ++  + d+v la ++Gv ++++ + +el ++l++al++++p+l++ ++
  MMETSP1174-20130828|15188_1 135 GAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEIlkIEQHKQGLPRSGAATTglcDIGIPVIDWVSLAAGLGVPAVKVDTCDELLHHLSHALTVDGPYLIEAKI 264
                  899*********************************************98776665555512556655555544444411133445679*************************************9765 PP

>> TIGR02720  pyruv_oxi_spxB: pyruvate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     1e-12   4.8e-10     409     531 ..     137     264 .]     128     264 .] 0.86

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1e-12
    TIGR02720 409 mGvgvPgaiaaklnyPdrqvfnlaGdGafsmvmedlltevkydlpvinivfsneelgfikdeqedsekd........liGvdltdadfakiaegvgvkgfrvekieelkavleeakkelkedkpvlidaki 531
                  +G g P a+ a +  P+r v n+  dG+     + l t+ +  l v  ++ +n++++ +k eq+++  +        l  + ++ +d+  +a g gv +++v++ +el + l +a      d p li+aki
  MMETSP1174-20130828|15188_1 137 IGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEILKIEQHKQGLPrsgaattgLCDIGIPVIDWVSLAAGLGVPAVKVDTCDELLHHLSHAL---TVDGPYLIEAKI 264
                  78999*******************************************************99976544411111111555788899**************************9999...678899999887 PP

>> TIGR03393  indolpyr_decarb: indolepyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.8e-12   1.3e-09     324     463 ..      52     194 ..      40     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 2.8e-12
    TIGR03393 324 ieeleklte...kfgsrwdsaaaipaaqpaesravlsqeefwqalqrflrpgdiiladq...GtsafGaaalrlpadvqlivqplwGsiGytlaaafGaqtaeperrvilliGdGsaqltiqelGsllrdkqrliilvlnneGytv 463
                  +++l +l+e     ++++++  + p  +p  ++  l   ++  a+      g i++ +    Gt+ +G  +   p   +l +    G+iG   + a Ga ta+p+rrvi +  dGs   ++q l +  r+++r+  ++  n+ y +
  MMETSP1174-20130828|15188_1  52 LTKLAELVEtapPLSRTSQREVMRPEKRPRSPTGSLNASKLCAAIAVCQPAGAIVVDESltsGTAYWGH-SRDCPPFSHLTLT--GGAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEI 194
                  555666666333667888888999*****************9999766555566665542225555554.4567777787765..59****************************************************9999976 PP

>> TIGR03457  sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.7e-10   7.7e-08     426     542 ..     131     253 ..      72     257 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.7e-10
    TIGR03457 426 alsfGncGyafpaiiGakvaaPdrPvvayaGdGawGlslseistavredlPvtavvfrnrqwgaekknqvdfynrr.fvat....ele.selsfakvaealGakGvvvdkledvaealkkaie 542
                  +l+ G  G + p  +Ga  a+P+r v+ +  dG+   sl+ + t +re l vt+v+  n ++   k +q +    r   at    ++  + + ++++a +lG+  v+vd+ +++ + l +a+ 
  MMETSP1174-20130828|15188_1 131 TLTGGAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEILKIEQHKQGLPRsGAATtglcDIGiPVIDWVSLAAGLGVPAVKVDTCDELLHHLSHALT 253
                  45679999**************************999*************************9888777655433303332111123224579999****************99999998875 PP

>> TIGR03846  sulfopy_beta: sulfopyruvate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.2e-07   0.00037      42      98 ..     135     191 ..     130     195 .. 0.94
   2 ?    2.3   0.0     0.063        29     113     156 ..     221     264 .]     207     264 .] 0.84

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8.2e-07
    TIGR03846  42 GsmglassiglGlalasedrkvividGDGsllmnlgvLatiaaekpknlilvllDng 98 
                  G++g+  ++++G a a ++r+vi ++ DGs +  l +L t a+e+ +  ++++ +n+
  MMETSP1174-20130828|15188_1 135 GAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNK 191
                  8999*******************************************9999998886 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.063
    TIGR03846 113 lvdlelvakaaGieevakvadeeeleeal.kalaekgtsfihvkv 156
                  ++d+  +a + G+  v kv + +el ++l +al+ +g+ +i +k+
  MMETSP1174-20130828|15188_1 221 VIDWVSLAAGLGVPAV-KVDTCDELLHHLsHALTVDGPYLIEAKI 264
                  799*************.9999999999998899999999998875 PP

>> TIGR03297  Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.5e-06    0.0025     216     334 ..     131     264 .]     104     264 .] 0.69

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.5e-06
    TIGR03297 216 fltvGsmGhasaialGlalakpdkkvvvlDGDGAalmhlGglatigkqspknliHvlldngahdsv............Ggqatvsqkldlae...iakacGYa.kalevstleelesalkkaksaegpalievkv 334
                   lt G++G    +a+G a a p+++v+ +  DG  +  l +l t ++ +   ++ v+  n+ ++              G+ +t   ++ +     ++ a+G    a++v+t +el + l++a +++gp lie k+
  MMETSP1174-20130828|15188_1 131 TLTGGAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARER-LRVTTVICANNKYEILkieqhkqglprsGAATTGLCDIGIPVidwVSLAAGLGvPAVKVDTCDELLHHLSHALTVDGPYLIEAKI 264
                  5789**************************************9999554.5566666666666632111111111111333332233332221113456665414778888888888888888888888888775 PP

>> TIGR01504  glyox_carbo_lig: glyoxylate carboligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05     0.017     418     537 ..     135     251 ..     131     260 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.8e-05
    TIGR01504 418 gplgwtvpaalgvaaadperqvvalsgdydfqflieelavgaqfkipyihvlvnnaylglirqaqrafdldyevslafeninssevagygvdhvkvaeglgckairvtkpeelaaaleqa 537
                  g +g   p a+g a+a p+r+v+ +  d    + ++ l   a+ ++    v+  n    +++  q    l  +           +++   +d v +a glg+ a++v   +el   l +a
  MMETSP1174-20130828|15188_1 135 GAIGQGPPLAVGAATACPNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNKYEILKIEQHKQGLPRSGA---ATTGLCDIGIPVIDWVSLAAGLGVPAVKVDTCDELLHHLSHA 251
                  7788899*****************************************999986666666555555554443322...2334456677789*****************999998777666 PP

>> TIGR03254  oxalate_oxc: oxalyl-CoA decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.6e-05     0.021     415     537 ..     133     264 .]     126     264 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.6e-05
    TIGR03254 415 twGvmGiGmGyaiaaavet.gkpvvaleGdsafGfsGmeveticrynlpvvvvilnnd..GiyrGddvn.ssg.adpaptvlvk....karydklieafgGvgynvttpdelkaaleealesgkptlidavi 537
                  t G +G G   a++aa  + ++ v+  + d +  +s   + t  r +l v++vi  n+   i + ++ +   + +  a+t l +       + +l   +g  +++v t del + l++al+   p li+a i
  MMETSP1174-20130828|15188_1 133 TGGAIGQGPPLAVGAATACpNRRVINFQADGSGMYSLQALWTQARERLRVTTVICANNkyEILKIEQHKqGLPrSGAATTGLCDigipVIDWVSLAAGLGVPAVKVDTCDELLHHLSHALTVDGPYLIEAKI 264
                  66888999999999987753789*********999999****************9776234666544330334355566666541111456777888888899*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 611.32
//
Query:       MMETSP1174-20130828|15190_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 699.05
//
Query:       MMETSP1174-20130828|15191_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 801.36
//
Query:       MMETSP1174-20130828|15192_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-58  195.1   0.0    3.2e-58  194.9   0.0    1.1  1  TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family


Domain annotation for each model (and alignments):
>> TIGR00044  TIGR00044: pyridoxal phosphate enzyme, YggS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9   0.0   7.9e-62   3.2e-58      12     229 .]      60     282 ..      51     282 .. 0.86

  Alignments for each domain:
  == domain 1    score: 194.9 bits;  conditional E-value: 7.9e-62
    TIGR00044  12 ktkieaaa.vevnr..naekvkllaVsKtkpasaIqeaydagqreFgEnyvQelveKiklleelgklewhfigqlqsnkdrlv...venfdlvhtiDslkiAkklneqreklkk....plnvllQinisdeesKSGlqreelleevaql.eelkhlklkGLmtIgaltdseeeqeesfrelkklfeklkqasklslidkLSmGmsdDfeeAIaaGatmvRiGtaiFgaR 229
                  + ++eaa+  +vn+  + ++ kl+aVsKtkp++++  +y+agqr FgEnyvQel++K+ +++   +++whfig+ qsnk++++   v+n+ +v+t+Dslk+A kln   e++ +     l v lQ+++s e+sKSG++ ee+  ++ ++ +e+++l l GLmtIga++ds    + +  +++++ +  ++ ++     +LSmGms+D+eeAI  Ga+ vR+G+ iFgaR
  MMETSP1174-20130828|15192_1  60 QRRVEAASlARVNDfpEMKTSKLVAVSKTKPVEQLMDVYKAGQRCFGENYVQELLDKAPQMPP--DVQWHFIGHIQSNKAKQLiqgVPNLVVVETLDSLKLARKLNLALEANDPsgkrRLTVFLQVDTSGEDSKSGVTMEEAPDLAMAIcAECPRLFLDGLMTIGAQGDSSCFARLVECRVAVASALSREPAT----FELSMGMSADYEEAILNGASSVRVGSSIFGAR 282
                  5555544314555521345789************************************99885..57788888888888876534589*******************999999888889*****************************99*******************998888877777666655555555....49*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1089.85
//
Query:       MMETSP1174-20130828|15195_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 760.26
//
Query:       MMETSP1174-20130828|15198_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|15196_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1347.07
//
Query:       MMETSP1174-20130828|15199_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 174.80
//
Query:       MMETSP1174-20130828|15201_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.68
# Mc/sec: 124.23
//
Query:       MMETSP1174-20130828|15197_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|15200_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-08   30.4   3.7    7.8e-08   29.8   2.6    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   2.6   1.9e-11   7.8e-08      19      68 ..      20      74 ..      11     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.9e-11
    TIGR00599 19 sLapldtslRChvCkdffkaPvltsCsHtFCslCiRrcLseep.....kCPlCra 68
                 ++ap  + + C +C+d + +Pv+ sC+H +C  C+ + L + p     +CP+Cr 
  MMETSP1174-20130828|15200_1 20 AIAPASSDFECALCHDLLYQPVVLSCGHAYCRECLSDLLTKSPegsthRCPICRR 74
                 567888999******************************9987444446***985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1256.90
//
Query:       MMETSP1174-20130828|15204_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|15203_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.77
# Mc/sec: 553.67
//
Query:       MMETSP1174-20130828|15202_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-16   55.4   0.0    1.4e-15   54.6   0.0    1.3  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.3e-14   48.7   0.0    6.2e-13   45.2   0.0    2.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.4e-08   31.0   0.0      1e-07   28.9   0.0    1.8  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.4e-07   28.5   0.0     0.0039   13.7   0.0    2.4  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.9e-07   27.5   0.0    3.3e-07   26.8   0.0    1.3  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    5.6e-06   22.0   0.0    1.9e-05   20.2   0.0    1.8  2  TIGR01054 rgy: reverse gyrase
    2.2e-05   21.5   0.2    5.5e-05   20.3   0.1    1.7  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    6.7e-05   19.9   0.1     0.0033   14.3   0.0    2.5  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00035   16.8   4.4    0.00066   15.9   0.0    2.7  3  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   3.1e-18   1.4e-15       9     357 ..     167     530 ..     161     555 .. 0.74

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 3.1e-18
    TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL..l.......lkglt.vvisPLisLmkDqvdqLraaGveaaalns.tlsak.eaqeilkalaagelklLYvaPerleqd.kflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaefv........ssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGl.kaeaillyseaDlallkrlieeseasedrkqieskkL 357
                   G+++    q+  i ++l+g+d+++   tG Gk l + vPa+  l       ++g++ +visP   L       +r    +a   +  +l     +++ + +  ++ +++L  +P rl+ + +  + +   ++++l +Dea  + + G  F  e ++   +++++pk+   + + at +++v++   ++L+++ +  +v         ++ + +  + v+ +e++   l ++lk++++k  +++ ss + v    e L+   i+ +  h+  ++++R  +  +F ++   +++ t     G+d + v ++i +d P +  +y   +GR  R  + +  a+l+  ++++ +lk+l ++ + s +  + +++k+
  MMETSP1174-20130828|15202_1 167 MGFDKMTHIQDRTIPQLLAGKDLVGAAKTGSGKTLSFLVPAVelLskvrftnRNGTGcLVISPTRELSLQTYGVVRDLCEHAGHTQThGLVIGgANRRAEAERLSKGVNILIATPGRLLDHlQNTKGFVFRNLQMLIIDEADRILEQG--FEEEMHK---IINILPKQRqSLLFSATQTKKVED--LARLSISGTPLYVgvddkdaqATVSKLEQGYIVTSSEKRFLMLFTFLKRNKKKKIMVFFSSCNSVKFHSELLNYIDITCMDIHGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGANgEGRALLFLIPEEVGFLKYLRAH-KVSLNEYEFQQNKI 530
                  699*************************************9632323333334666548****98776665555555555554444312333303334444556778**********986512334566789************9999..5566555...556666665577788888887754..34455554444431110000034555667899999************************************************************************************************************9965513456666677777777765544.34444444444444 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.4e-15   6.2e-13      11     355 ..     168     500 ..     159     507 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 1.4e-15
    TIGR04121  11 gwepraf.QkevleaaeegesglliapTGaGKTlavflpsliela.akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskill 355
                  g++ +++ Q +++ ++ +g++ +  a TG+GKTl+  +p++  l   + ++++g   l i+P + L+ ++   ++  +e+ g + + +l  G ++ ++ a++ +k  +iL+ Tp  l   l ++ +  +f++l+++++DE   +l++   + ++  +  L +   + + +  sAT  + +e++a++ +   +      v +++k a++  s l++    +  +      +l + l++ kk++  +vF    + +  ++ +Ll+  + +   i   Hg  ++++R+    ++++ +  +++cT     G+D  +vd +iq   p      + R+GR++   + + ++ll
  MMETSP1174-20130828|15202_1 168 GFDKMTHiQDRTIPQLLAGKDLVGAAKTGSGKTLSFLVPAVELLSkVRFTNRNGTGCLVISPTRELSLQTYGVVRDLCEHAGHTQTHGLVIGGANRRAEAERLSKGVNILIATPGRLLDHL-QNTKGFVFRNLQMLIIDEADRILEQGFEEEMHKIINILPK---QRQSLLFSATQTKkVEDLARLSISG-T---PLYVGVDDKDAQATVSKLEQ--GYIVTSSEKRFLMLFTFLKRNKKKKI-MVFFSSCN-SVKFHSELLNYIDITCMDI---HGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGANGEGRALL 500
                  666555549999*************************999888875566778***************************************************************985555.4556789****************98665555554444443...3445567999655144455444443.3...56777766666666666666..56666666666666666666555554.55554443.4456777887777644443...89999*******************************************************9988888877765 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.3e-10     1e-07       7     363 ..     167     535 ..     164     556 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.3e-10
    TIGR00614   7 fglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav.vsdgl.........tlvisPLisL.......meDqvlqLkasdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekks..kiledllkfiv.....kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDgl.ksecvlfyapaDvallrrllveekdekkreyklkllekvek 363
                   g+++    q ++i   l+g+d +    tG Gk L + +pav +++++          lvisP + L       ++D  ++  +++ +  ++++a+ + ea+++        + +l  tP ++  + +  + +   ++l ++++Dea  i + G +  + +k +++L ++  s   +  +at +++v+ D+   L+++ +  ++   d ++ + +v + ++   +++  ++f++     k+ k k  +++  s ++v+  ++ L+  +++++  h   ++++r++   +f +    +++ t     G++ p v  +i y+ p +  +Y   +GR  R    + +++lf  p++v +l+ l   + + ++ e+++++++ v+ 
  MMETSP1174-20130828|15202_1 167 MGFDKMTHIQDRTIPQLLAGKDLVGAAKTGSGKTLSFLVPAVeLLSKVrftnrngtgCLVISPTRELslqtygvVRDLCEHAGHTQTHGLVIGGANRRAEAERLS-----KGVNILIATPGRLLDHLQNTKGF-VFRNLQMLIIDEADRILEQGFE-EEMHKIINILPKQRQS---LLFSATQTKKVE-DL-ARLSISGTPLYVG-VDDKDAQATVSKLEQgyIVTSSEKRFLMlftflKRNKKKKIMVFFSSCNSVKFHSELLNYIDITCMDIHGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGANgEGRALLFLIPEEVGFLKYLRAHKVSLNEYEFQQNKIANVQS 535
                  68999999*********************************942333322222222249****987621222223333344444444455555555555444333.....33567777787777664444444.6778899***********9965.3445666777665443...446788888875.54.4578877766654.44455555555544433444455566666666667777776899999999999999999***************************99999999988899*****************************997542789999**********9999999888888888888887764 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.6e-06    0.0039     265     369 ..     195     310 ..     126     340 .. 0.72
   2 !   12.5   0.0     2e-05    0.0093     484     534 ..     423     473 ..     363     504 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.6e-06
    TIGR00643 265 VGsGKTv......Vavlallavi.esGyqvalmaPTeiLAeQhyeklrelleplgie..valLtgslkkkkkkelleeiasGeielvvGThallqekve......fkeLalviiDEQhrF 369
                   GsGKT+      V +l+ ++   ++G  ++++ PT  L  Q y  +r+l e+ g +   +l+ g   ++++++  e++++G +++++ T   l ++ +      f++L++ iiDE  r 
  MMETSP1174-20130828|15202_1 195 TGSGKTLsflvpaVELLSKVRFTnRNGTGCLVISPTRELSLQTYGVVRDLCEHAGHTqtHGLVIG---GANRRAEAERLSKG-VNILIATPGRLLDHLQntkgfvFRNLQMLIIDEADRI 310
                  69****84443334455555543358**************************9754300334444...56788899999998.89999998766665543444559**********9985 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2e-05
    TIGR00643 484 nvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied 534
                  ++  +hg+ k++++   + +F++ +  iL++T v   G+d+P +  ++ +d
  MMETSP1174-20130828|15202_1 423 TCMDIHGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWIIQYD 473
                  55568*************************************998887655 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.2e-10   3.3e-07      26     167 ..     161     308 ..     153     339 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.2e-10
    TIGR03817  26 vaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.....pratalylaPtkalaadqlravkelee....rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdech 167
                  ++ l++ G ++  + q r+     aG++ v a+ t sGk+l++l+P+++ l++       ++  l ++Pt+ l+     +v++l e    ++ +  +  G   ++e e + +  +++++ P  l   +  +      ++r+l+ +++de+ 
  MMETSP1174-20130828|15202_1 161 QKGLTEMGFDKMTHIQDRTIPQLLAGKDLVGAAKTGSGKTLSFLVPAVELLSKVrftnrNGTGCLVISPTRELSLQTYGVVRDLCEhaghTQTHGLVIGGANRRAEAERLSKGVNILIATPGRLLDHLQ-NT--KGFVFRNLQMLIIDEAD 308
                  56678889999988899999999************************99998884444348889********************996776777778889999999999999999999999988765543.32..34589**********96 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.2e-08   1.9e-05      90     216 ..     181     314 ..     164     348 .. 0.76
   2 ?   -1.8   0.0      0.19        86     383     410 ..     449     475 ..     399     550 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.2e-08
    TIGR01054  90 krvlknksFaivaPtGvGktt.fgl......vmslflakkgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilittsaflsknleklk.ykF...dlvfvDDvDalLkas 216
                   ++l +k     a tG Gkt  f +      +   f   +g  +++i Pt+ L  q++  +++l e++g + + +     +   +++   er+++ + +ili+t   l  +l++ k + F   +++++D+ D +L ++
  MMETSP1174-20130828|15202_1 181 PQLLAGKDLVGAAKTGSGKTLsFLVpavellSKVRFTNRNGTGCLVISPTRELSLQTYGVVRDLCEHAGHTQTHG---LVIGGANRRAEAERLSK-GVNILIATPGRLLDHLQNTKgFVFrnlQMLIIDEADRILEQG 314
                  5667777777788999999952433111111233577788999***********************999666433...3466778889999**99.79**********999999998655222799********9875 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.19
    TIGR01054 383 GvasyygvlvRGlDlPervryavFlgvP 410
                  G+   ++v +RGlD+P+ v + + ++ P
  MMETSP1174-20130828|15202_1 449 GILLCTDVAARGLDIPA-VDWIIQYDPP 475
                  55555666666666665.3444444444 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.7   7.6e+02       5      22 ..     192     209 ..     189     219 .. 0.73
   2 !   20.3   0.1   1.2e-07   5.5e-05     127     324 ..     301     496 ..     275     530 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.7
    TIGR01587   5 eAPtGyGKteaallwalk 22 
                   A tG+GKt   l+ a +
  MMETSP1174-20130828|15202_1 192 AAKTGSGKTLSFLVPAVE 209
                  588*****9777666665 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.2e-07
    TIGR01587 127 vliiDEvhayeey.tkalllallevlkdvdvkillmsAtlpkllkeylekiel.veenealdlke.ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelapid..sLiQRlGRlaRygrkir 324
                  +liiDE++ + e+  ++ + +++++l + +++ ll sAt  k ++ +++           +d k+ +   ++     i+  +++ + +l   l + +k+kk+++++ + + ++++ ++l + +     + +H++ +++ r      +  +++k  ++++  T v+  +lDi  vd++i    p d    i R+GR aR   +++
  MMETSP1174-20130828|15202_1 301 MLIIDEADRILEQgFEEEMHKIINILPKQRQS-LLFSATQTKKVEDLARLSISgTPLYVGVDDKDaQATVSKLEQGYIVTSSEKRFLMLFTFL-KRNKKKKIMVFFSSCN-SVKFHSELLNYID-ITCMDIHGKQKQQKRTT----TFFQFNKATSGILLCTDVAARGLDIpAVDWIIQYDPPDDprEYIHRVGRTARGANGEG 496
                  79*****9766551556699999988877665.789*****7777766532220222223333332223333333344555555555555334.4567778888877665.5677777776666.57899***977766655....5999*********************557999988777665569*********554444 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.021       9.4      32      69 ..     194     236 ..     184     323 .. 0.84
   2 !   14.3   0.0   7.3e-06    0.0033     311     393 ..     419     501 ..     360     544 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.021
    TIGR04095  32 atGtGktltaLalvskl.....aekikslvvvvvvPykhLveq 69 
                   tG+Gktl  L+ +++l       + +    +v+ P ++L  q
  MMETSP1174-20130828|15202_1 194 KTGSGKTLSFLVPAVELlskvrFTNRNGTGCLVISPTRELSLQ 236
                  59******99998888866656344455667888999888766 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.3e-06
    TIGR04095 311 elglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspGkeraeiy 393
                   +++++     ++++++R++   qf++ +   l+       G+D+Pa+   +      +Pr++i R GR  R + G  ra ++
  MMETSP1174-20130828|15202_1 419 YIDITCMDIHGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGANGEGRALLF 501
                  4566677777889999************999999999999*********999999**********************999876 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.0      0.59   2.7e+02     126     159 ..      65      96 ..       5     137 .. 0.42
   2 ?    1.6   0.0      0.03        14     551     582 ..     273     309 ..     225     338 .. 0.82
   3 !   15.9   0.0   1.4e-06   0.00066     690     733 ..     427     470 ..     412     473 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.59
    TIGR00580 126 delkdetlilldepekvekaaeelereleeflea 159
                  ++++d t   +++++k +++++++ ++ ee  ++
  MMETSP1174-20130828|15202_1  65 EKISDPTA--TKKKKKKKRNNAAVVESAEETASN 96 
                  11111111..111111111111111111111111 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.03
    TIGR00580 551 GkidiliGT.hkllq.....kdvkfkdlgLliiDEEqr 582
                  G ++ili T  +ll+     k + f++l +liiDE  r
  MMETSP1174-20130828|15202_1 273 G-VNILIATpGRLLDhlqntKGFVFRNLQMLIIDEADR 309
                  4.7888887436664222336799***********877 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.4e-06
    TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                  +Hg+ ++++  +++ +F+k ++ +L+cT +   G+dip +  ii
  MMETSP1174-20130828|15202_1 427 IHGKQKQQKRTTTFFQFNKATSGILLCTDVAARGLDIPAVDWII 470
                  7**************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.15s 00:00:00.85 Elapsed: 00:00:00.90
# Mc/sec: 944.46
//
Query:       MMETSP1174-20130828|15205_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 179.99
//
Query:       MMETSP1174-20130828|15206_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 368.34
//
Query:       MMETSP1174-20130828|15207_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 745.35
//
Query:       MMETSP1174-20130828|15208_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 864.32
//
Query:       MMETSP1174-20130828|15210_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-18   62.5   0.0      1e-17   62.2   0.0    1.0  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
    2.7e-05   21.9   0.0    3.2e-05   21.7   0.0    1.1  1  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
  ------ inclusion threshold ------
      0.022   12.5   0.0      0.025   12.3   0.0    1.1  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   7.6e-21     1e-17     138     235 ..       3     106 ..       1     110 [. 0.91

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 7.6e-21
    TIGR00186 138 ktssGalellplvrvtnlsetltklkesgfwivgtsleaeetkyekkktk......klaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgillfe 235
                  ++s G+   l +   +   e +  l++ g +i +t+l  ++t  + +++       ++a+v+G+E +G++  +k+ +D  i +pm g  +SLNvSVAt+++l  
  MMETSP1174-20130828|15210_1   3 RVSKGSHRWLSVRSFDTAQECVAALRDAGCTIWATELAPDATVLTLDSNSeevfppRVAVVMGSEAEGISMDLKEAADERIMLPMHGFAQSLNVSVATALVLQV 106
                  8999**************************************555554445688889*******************************************9975 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.3e-08   3.2e-05      88     141 ..      46     104 ..       3     110 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.3e-08
    TIGR00185  88 isvkykdtd......ylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvl 141
                   +++ ++++       +v+G+e++G+ ++l ++  ++++ +P+   ++sln+s a a+vl
  MMETSP1174-20130828|15210_1  46 LTLDSNSEEvfpprvAVVMGSEAEGISMDLKEAA-DERIMLPMHGFAQSLNVSVATALVL 104
                  444444444544444589***********99987.999*****************99987 PP

>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05     0.025     104     153 ..      53     107 ..      32     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
    TIGR00050 104 g.....kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYel 153
                        +va+v G E +G++ +  e +d  + +p++    slN+s A a++l  +
  MMETSP1174-20130828|15210_1  53 EevfppRVAVVMGSEAEGISMDLKEAADERIMLPMHGFAQSLNVSVATALVLQVV 107
                  23445689*************9999***********************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|15213_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|15211_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 868.35
//
Query:       MMETSP1174-20130828|15217_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1242.25
//
Query:       MMETSP1174-20130828|15220_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 413.00
//
Query:       MMETSP1174-20130828|15221_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.60
# Mc/sec: 140.79
//
Query:       MMETSP1174-20130828|15222_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.56
# Mc/sec: 1018.20
//
Query:       MMETSP1174-20130828|15223_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 848.03
//
Query:       MMETSP1174-20130828|15226_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-22   76.8   0.1    7.2e-22   75.7   0.1    1.5  2  TIGR00598 rad14: DNA repair protein


Domain annotation for each model (and alignments):
>> TIGR00598  rad14: DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.074   3.1e+02     150     168 ..      29      47 ..      13      50 .. 0.73
   2 !   75.7   0.1   1.7e-25   7.2e-22      10     113 ..      54     152 ..      38     157 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.074
    TIGR00598 150 eeedvyrktCttCglelee 168
                  e    +  +C  Cg ++++
  MMETSP1174-20130828|15226_1  29 EPSSQMGTRCEACGASIQQ 47 
                  4455567799999988775 PP

  == domain 2    score: 75.7 bits;  conditional E-value: 1.7e-25
    TIGR00598  10 DsvlfdvfklavCdkCrdkedkykLltkteakeeylLkdcdldkreellrylvkknPhnsrwgdmkLylklqvekralevwGseeeLeeekerreekkeerkek 113
                  D+ l d f+++vC +Cr ++  y+Ll k  a++ +lL d+ ++     lry++kknP +s w  mkLyl  +v++r++ +wG+ee+L +e err+ k+ +r  k
  MMETSP1174-20130828|15226_1  54 DP-LLDAFDVSVCVTCRREDPDYELLPKSAAQQRFLLPDASFKV----LRYVEKKNPRHSSWQPMKLYLVKHVRARSYVRWGGEEGLGTELERRDAKHWDRTFK 152
                  43.789**********************************9987....**********************************************9987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 651.95
//
Query:       MMETSP1174-20130828|15227_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 407.44
//
Query:       MMETSP1174-20130828|15229_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1174-20130828|15232_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|15233_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|15228_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-28   97.2   0.0    3.1e-28   96.4   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   7.5e-32   3.1e-28       1     125 [.      11     130 ..      11     190 .. 0.93

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 7.5e-32
    TIGR00231   1 tkeikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlk 125
                  ++ ik+v+vG++++GKs+Ll+ +++n+ ++ e++p+v+++y ++    +Gk++ + l+DTaGqed+d++r+l+++ ++ +l +++ +++ +++e++ +k+ +e+  +a+  gvp++lv+ K Dl 
  MMETSP1174-20130828|15228_1  11 MESIKCVVVGDGACGKSCLLITFTTNS-FPGEYVPTVFDNYSSN-YLFQGKPVNLGLWDTAGQEDYDRLRPLSYPCTDIFLVCFSHASR-SSLENVRNKWAPELSYHAP--GVPVLLVGCKSDLL 130
                  5689***********************.**************98.8889999*************************************.*******************..************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 2192.82
//
Query:       MMETSP1174-20130828|15237_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 347.57
//
Query:       MMETSP1174-20130828|15239_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.1   0.4      0.029   12.3   0.2    1.4  1  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     7e-06     0.029       3      21 ..     184     202 ..     182     206 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-06
    TIGR01639   3 yndlskkltkEelnelins 21 
                   ++l  klt+Ee+ne+i++
  MMETSP1174-20130828|15239_1 184 MSNLGEKLTDEEINEMIRE 202
                  68999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.49
# Mc/sec: 1169.05
//
Query:       MMETSP1174-20130828|15242_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1174-20130828|15243_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 691.51
//
Query:       MMETSP1174-20130828|15245_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-18   62.8  19.7     0.0006   16.8   0.3    5.0  5  TIGR00435 cysS: cysteine--tRNA ligase
    0.00053   18.2   9.0       0.34    9.2   0.1    4.9  5  TIGR02220 phg_TIGR02220: phage conserved hypothetical protein, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   8.3e-07    0.0017     417     457 ..      13      53 ..       3      59 .. 0.90
   2 !   13.3   0.0   3.3e-06    0.0068     413     457 ..      93     138 ..      79     145 .. 0.78
   3 !   16.6   0.4   3.3e-07   0.00068     418     457 ..     182     222 ..     153     228 .. 0.73
   4 !   16.8   0.3   2.9e-07    0.0006     413     458 ..     251     297 ..     242     303 .. 0.83
   5 !   11.8   0.4   9.6e-06      0.02     412     458 ..     321     368 ..     301     375 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 8.3e-07
    TIGR00435 417 elgeledlieersearkkkelkkaDkiRdellkkgivLeDt 457
                  ++++++dl+++r +a+ +++++ aD+i  +l+++g+ ++D+
  MMETSP1174-20130828|15245_1  13 QEQDIHDLLAQRLNAKMSRDFHTADRIQTDLIEAGVYVDDK 53 
                  6799*********************************9998 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.3e-06
    TIGR00435 413 snddelgeledlieersearkkkelkkaDkiRdellkk.givLeDt 457
                  ++ ++++ + +l+eers+a+  +++++aD+iR +l+++ ++ ++D+
  MMETSP1174-20130828|15245_1  93 VDGQDDALIGQLVEERSKAKIFHDYENADSIRSRLIEEfNVHIDDK 138
                  3333667899**********************99876427888876 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 3.3e-07
    TIGR00435 418 lgeledlieersearkkkelkkaDkiRdel.lkkgivLeDt 457
                  ++ ++ +i er ea+k++++++aD+iRdel ++ ++ ++D+
  MMETSP1174-20130828|15245_1 182 EEYVQGKIDERYEAKKSRQFDLADNIRDELlAEFNVSIQDK 222
                  3345567888*****************76516789999998 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 2.9e-07
    TIGR00435 413 snddelgeledlieersearkkkelkkaDkiRdel.lkkgivLeDtp 458
                   +dde++ + ++i+ rsea+++++++ aD+iR +l +  +++++D++
  MMETSP1174-20130828|15245_1 251 LSDDEVSTISRMIAARSEAKRDRDYRVADDIRSTLlATYNVIVDDKS 297
                  578999**************************665156788888874 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 9.6e-06
    TIGR00435 412 gsnddelgeledlieersearkkkelkkaDkiRdellkk.givLeDtp 458
                  +  d+e + +++l+++r++ ++++++ +aD+iRd+l+++  i ++D++
  MMETSP1174-20130828|15245_1 321 ELTDKEIEMVHSLLAKRTSFKREQNYGAADDIRDQLQDNfSIKIDDRT 368
                  34566777888999**********************964278888875 PP

>> TIGR02220  phg_TIGR02220: phage conserved hypothetical protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.22   4.6e+02       8      30 ..      25      47 ..      21      59 .. 0.76
   2 !    3.9   0.0    0.0075        15      30      52 ..     126     143 ..     108     169 .. 0.80
   3 ?    2.7   0.1     0.018        37       3      52 ..     180     227 ..     178     233 .. 0.87
   4 !    3.8   0.1    0.0078        16      38      61 ..     287     309 ..     266     318 .. 0.80
   5 !    9.2   0.1   0.00017      0.34      37      69 ..     357     390 ..     336     396 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.22
    TIGR02220  8 LNekagksfkltaekhkklikaR 30
                 LN k  ++f++  + + +li a 
  MMETSP1174-20130828|15245_1 25 LNAKMSRDFHTADRIQTDLIEAG 47
                 89999999998888888888875 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0075
    TIGR02220  30 RlkegykledFkkViDnkvseWl 52 
                  Rl     +e+F+  iD k+ eW+
  MMETSP1174-20130828|15245_1 126 RL-----IEEFNVHIDDKIREWS 143
                  44.....6889999********6 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.018
    TIGR02220   3 eiieYLNekagksfkltaekhkklikaRlkegykledFkkViDnkvseWl 52 
                  ei eY+  k ++++   a+k +++  a    +  l +F+  i  k+++W+
  MMETSP1174-20130828|15245_1 180 EIEEYVQGKIDERYE--AKKSRQFDLADNIRDELLAEFNVSIQDKIKQWS 227
                  778999999999887..8899999888888888999*************6 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.0078
    TIGR02220  38 edFkkViDnkvseWlgtesekYLr 61 
                    ++ ++D k++eW  ++s++Y++
  MMETSP1174-20130828|15245_1 287 ATYNVIVDDKSKEWH-VQSDDYVQ 309
                  567899********7.56788876 PP

  == domain 5    score: 9.2 bits;  conditional E-value: 0.00017
    TIGR02220  37 ledFkkViDnkvseWlg.tesekYLrPktLFgkk 69 
                   ++F   iD  ++eW+  ++s+ Y  P t F++ 
  MMETSP1174-20130828|15245_1 357 QDNFSIKIDDRTKEWSVaQDSDGYEAPGTRFSTT 390
                  689999*********85166799********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1392.17
//
Query:       MMETSP1174-20130828|15251_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 662.88
//
Query:       MMETSP1174-20130828|15250_1  [L=1030]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.50
# Mc/sec: 2718.98
//
Query:       MMETSP1174-20130828|15254_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-26   91.5   0.0    1.7e-26   91.3   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.3e-21   74.6   0.2    1.5e-21   74.4   0.1    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.021   12.8   0.2      0.032   12.2   0.1    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   1.2e-29   1.7e-26       1     102 [.       2      97 ..       2     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 91.3 bits;  conditional E-value: 1.2e-29
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgg 102
                  dY+e+Lgv+++As+ e+++AYrk a k+HPD+n+ ++ea ++f  ++eAyevLsd+e+r+qY+ +g++  ++ + ++g++ ++      ++++d f+++ ++
  MMETSP1174-20130828|15254_1   2 DYFELLGVDRTASDLEVRRAYRKNALKFHPDKND-SPEAPAQFAAVAEAYEVLSDPERRRQYETYGSESKSRPS-RSGSDWRH----AASMFNDHFGQVHHR 97 
                  9*********************************.********************************9998854.33443333....356677777776654 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   1.1e-24   1.5e-21       3      73 ..       2      72 ..       1      97 [. 0.84

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 1.1e-24
    TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDr 73
                 Dy+e Lg+dr a + e+++a+rk a k+hPD+n+ ++a   fa + ea++vLs+P++r +y+ yG +   r
  MMETSP1174-20130828|15254_1  2 DYFELLGVDRTASDLEVRRAYRKNALKFHPDKNDSPEAPAQFAAVAEAYEVLSDPERRRQYETYGSESKSR 72
                 9****************************************************************886554 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.3e-05     0.032       8      56 ..      18      62 ..      12      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
    TIGR00714  8 LrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 +r+ yrk   ++HPD    + +   a  q + + +Ay+ L dp +R +y
  MMETSP1174-20130828|15254_1 18 VRRAYRKNALKFHPD----KNDSPEAPAQFAAVAEAYEVLSDPERRRQY 62
                 567899999******....4444578999*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 674.61
//
Query:       MMETSP1174-20130828|15253_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1233.94
//
Query:       MMETSP1174-20130828|15256_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-36  122.5   0.2    6.1e-36  122.0   0.1    1.1  1  TIGR03175 AllD: ureidoglycolate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03175  AllD: ureidoglycolate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.1   1.5e-39   6.1e-36       2     321 ..       3     316 ..       2     327 .. 0.85

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 1.5e-39
    TIGR03175   2 kvskekleklikqklekaglkeehaeevadvltfadargihshgavrveyyaeriakggitaepe...lslektgpatailhgdngagqvaakealekaielakesgvavvgvsri.shsgalsyfvkkaaeqglvalslcqsdpmvvpfggteiyfgtnpiafaapsageeiitfdmattvqawgkvldarsrnesipetwavdkkgapttdafev..rallpiagpkgyglmmmvdvlsgsllglpfgkhvssmyedltegrnlgqlflvinpafftdleafkkqisqmleelkavkaaegfkqvyypgergklkskkadkegi 321
                  k++ e+l+ l+   +++ g  +++a+ +++v+ +a+ +     g  ++  y +    g i+ + e   l +e+    + +++g++ +g  a  +a++ aie a  s v vvg  ++ + +g l+y+  +  + g++a+ + qs  +v p gg  + fgtnpi +a p  ++ ++++dmat+  +   v+ a+++  ++pe  a+d +g+pt+d+ +    all   g kg gl ++v++l g+    p g +  +     ++ rn  +  + ++p  + d   f+ +++++   +k    a g + v  pge++k  +++    g+
  MMETSP1174-20130828|15256_1   3 KITIEELNDLVYTAMVNLGYPDDEAKVLTKVMLHAELHNN-NQGISKL--Y-DTNGPGSIKYNAEagpLLIERETALSCVVNGNQRSGMSALSKAVDLAIEKASASMVGVVGTYNTyTSTGMLAYYADQIGRAGFIAIVMAQSPELVAPNGGMRPVFGTNPICIAVPGPEDGPLILDMATAAITLFGVVTAKANGTELPEGVAIDVEGNPTRDPVKAlqGALLTFGGHKGSGLSLIVELLGGVW---PGGAQAGAEV-PKKQARNWANTIIALDPGLLMDPYEFRSRVAKVCAHVK----ASGDGGVILPGEIEKSAYQRNVASGM 316
                  6888999999999999999999999999999998875442.3344333..3.2334455555443222679999999***********************************9887255699**********************************************************999999999*************************97533589********************97...4455555443.45789************************999876655....678899*******9999998877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 991.38
//
Query:       MMETSP1174-20130828|15258_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 82.49
//
Query:       MMETSP1174-20130828|15261_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|15257_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 779.94
//
Query:       MMETSP1174-20130828|15259_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   18.1   0.1    0.00028   17.8   0.1    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.8e-08   0.00028     259     365 ..     185     299 ..     142     335 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.8e-08
    TIGR02037 259 kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlk............eaeeekasseks.ekkellglsvadlseeaakkkkske 365
                  +   + +v +++ A++aG+k G +i++v++ +++s +d ++ ++ ++  +k     +R + ++++k + +            +     a+s+++ + +   g + ++l+++++k  +sk+
  MMETSP1174-20130828|15259_1 185 ETNRIVSVKDSGQAARAGVKPGWLIVAVDDSPVDSDDDYEAWVALARKDNKDGCITVRFELTEQVKPSTEkmnrdgtkidyfK-----AQSDTQaSGNFQGGWTASSLEKASKKPLSSKN 299
                  555678899999999*******************9999999999999999988888888888887777765555454332221.....11111122233345566666655544433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.79
# Mc/sec: 614.84
//
Query:       MMETSP1174-20130828|15260_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-67  224.3   5.9    4.8e-45  152.0   0.0    3.1  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.2e-40  136.4   3.3      2e-24   84.2   0.0    3.7  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.6e-38  130.3   4.5    3.7e-18   63.5   0.7    4.2  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-35  120.6   0.1    5.9e-12   43.5   0.0    4.2  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-35  119.4   0.7    6.2e-10   36.7   0.0    4.7  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.9e-34  116.8   5.9    6.1e-11   39.1   0.0    4.7  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.7e-32  109.1  18.4    3.3e-12   43.6   3.9    5.0  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    9.8e-32  108.0   5.3    1.6e-13   47.9   0.0    4.5  5  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      1e-31  108.0   3.8      5e-20   69.8   0.1    4.1  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.1e-31  107.0   3.0    1.4e-16   58.5   0.0    4.4  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      5e-31  106.0   2.1    1.3e-13   48.9   0.1    4.1  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.2e-30  104.7   0.1      1e-10   39.6   0.0    4.2  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.1e-30  103.7   0.2    8.4e-10   36.3   0.0    4.3  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      7e-30  102.2  11.2    1.9e-11   41.7   0.1    5.1  6  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.1e-29  101.6   3.5    3.1e-11   41.2   0.0    4.1  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      6e-29   98.8   0.1    9.4e-13   45.3   0.0    4.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      9e-29   98.4   6.3    4.4e-12   43.8   0.0    4.8  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.4e-28   96.4   0.5    4.1e-10   37.3   0.0    5.0  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.7e-27   92.7   6.4    3.2e-14   51.0   0.3    4.6  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-26   91.4   0.3    4.1e-08   30.0   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.7e-26   91.0   0.7    3.6e-12   44.1   0.0    3.6  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.8e-26   90.9   0.5    7.4e-08   29.9   0.0    4.4  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.3e-26   89.8   0.6    2.2e-09   34.8   0.0    4.3  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.2e-24   85.0   2.3    1.4e-09   35.6   0.0    4.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.6e-24   84.5   6.5    6.7e-10   36.8   0.0    4.3  5  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.8e-24   84.4   0.4    1.3e-09   35.8   0.0    4.3  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      4e-24   83.1   0.2    6.1e-10   36.7   0.0    4.5  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.4e-24   82.2   0.3    8.6e-08   28.6   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    9.7e-24   81.4   1.4    4.9e-11   39.4   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
      2e-23   81.0   1.4    7.4e-09   33.1   0.0    5.0  5  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-23   80.6   0.1    3.4e-06   24.7   0.0    4.2  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      3e-23   80.6   0.0    4.9e-08   30.6   0.0    4.1  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.8e-23   78.3   0.2    4.8e-10   36.2   0.0    3.8  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.1e-22   78.2   1.7      5e-12   43.3   0.0    3.8  3  TIGR01288 nodI: nodulation ABC transporter NodI
    6.6e-22   75.8   0.3    1.7e-09   35.3   0.1    3.7  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      1e-21   75.1   2.0    8.5e-07   25.8   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.1e-21   75.2   0.0    7.6e-09   33.2   0.0    4.3  3  TIGR01978 sufC: FeS assembly ATPase SufC
    1.9e-21   74.3   2.4      5e-08   30.2   0.0    4.3  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.1e-21   73.6   0.2    2.6e-08   31.1   0.0    4.2  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.4e-20   71.6   0.1    1.2e-08   32.3   0.1    4.3  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.5e-20   70.3   0.1    3.5e-09   33.5   0.0    3.2  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.6e-20   69.4   1.5    5.1e-07   27.0   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.3e-19   67.9   1.2    7.4e-08   29.1   0.0    4.1  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    7.4e-19   65.5   0.0    8.7e-07   25.6   0.0    3.6  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.8e-18   63.9   0.4    2.9e-08   30.9   0.0    4.0  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.1e-16   58.1   0.7    3.8e-06   24.5   0.1    4.3  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.7e-16   56.1   0.7    3.7e-07   27.7   0.2    3.5  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.9e-15   53.3   0.1     0.0019   13.5   0.0    4.1  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      2e-15   54.2   5.5    2.9e-07   27.3   0.0    4.0  3  TIGR00955 3a01204: pigment precursor permease
    4.4e-15   53.1   0.2    2.7e-06   24.1   0.0    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
      1e-12   45.5   8.3    1.9e-05   21.6   1.1    4.6  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.1e-11   40.2   0.6    3.5e-05   18.6   0.0    2.9  2  TIGR01257 rim_protein: rim ABC transporter
    2.1e-11   39.9   0.1    2.4e-07   26.4   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.2e-09   34.1  13.5    0.00014   18.3   0.0    5.0  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      5e-08   29.8   0.2    2.5e-06   24.2   0.0    3.1  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.7e-05   21.0   0.0      0.014   11.4   0.0    2.4  2  TIGR00630 uvra: excinuclease ABC subunit A
    0.00011   17.8   6.8      0.041    9.3   0.0    3.8  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00014   19.5   0.1       0.13    9.9   0.0    2.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0057   13.9   0.4      0.081   10.2   0.0    2.2  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   3.0       0.5        35     243     284 ..      35      76 ..      12      86 .. 0.79
   2 !  152.0   0.0     7e-47   4.8e-45      20     398 ..     239     637 ..     230     647 .. 0.77
   3 !   69.3   0.0     8e-22   5.5e-20     158     236 ..     692     770 ..     685     792 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.5
    TIGR03719 243 ysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqa 284
                   +++ +qke+rl++e+ ++++ +k+ +ke + ++++ + +qa
  MMETSP1174-20130828|15260_1  35 MADFAKQKEERLKRESMAKKEAAKKAQKEAKALKEKKREKQA 76 
                  567788888888888888888888888888888888777776 PP

  == domain 2    score: 152.0 bits;  conditional E-value: 7e-47
    TIGR03719  20 ilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvr...enveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpee..dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk....GtvvavthdryfldnvaeWileldrG..egipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspk.....arqakskarlaryeelase...esekkee.tae....ivippgerlGdkvievenlskaf.gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsr.dald 398
                  +l+d   +   g   G++G nG Gkst+l+ +a       G++    +++v y++qe +l ++  v+   e v ++  e + +l+++ e+ ++ ae  +  ++  ++  ++ e+++  ++ +  ++ e  +  l   +e     +e lsGG + r  l+  ++ +PdlllldePtnhl   +v Wl + lk  +      vv+v hdryf+d+v+  +l +     + +  +gny+ w  +++++ +  eke a r+ ++++  e+  +  k     ++  k k + ++ e+l+ +   ++e+k+  +++    + +++g  l   +++++++s ++ g  ll+++ +f + + + + ++G nG Gk+tl+kl+ g+ +p +Ge++i    ++a v+q++ d++d
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA---RQVGDVP--ANVTVHYVSQEVHLTDKTRVMtpgECVVAADVERRLLLEEM-EVLENAAEAGELGEESQQRLVEVMERLEMIESDTASRRAEELLINLGFSDElrSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEvwadRIVVIVSHDRYFMDEVCTDVLHISGAarRLTQSHGNYTMWAARRAEQKAAFEKETALRANEIDRLKEYAGHGFKyggsgSQINKMKMKEKQAEKLEVQageDAEEKAAlQEDmelpLELKSGGELPGFIVQMRGVSFNYpGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHHaDQID 637
                  68888899999999****************9996...4567764..5799***********99999823234444444444445554.4556666665555666666666677777777777777777777777776642267899********************************************9854222257899******************86422567889******************************9999876655322213445777777777887544111333333213331112445678888899**********9456799*******************************************************8724555 PP

  == domain 3    score: 69.3 bits;  conditional E-value: 8e-22
    TIGR03719 158 kveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGeg 236
                    + lsGG++ rval+ + +++P +l+ldePtn ld esva l   +k ++G+vv+v hd++f++++++  l ++ G  
  MMETSP1174-20130828|15260_1 692 PAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  5678999999999999999999999999999999999999999999999999999999999999999988888776654 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.5   1.5e-15     1e-13     303     522 ..     204     445 ..     182     452 .. 0.71
   2 !   84.2   0.0   2.9e-26     2e-24     320     520 ..     544     755 ..     513     762 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.5e-15
    TIGR02857 303 aeeqpeaekapltaaass........slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllkll.lgfvepteGailv....ngaelaeldadswrkq...iawvpQkPllfegtvaenirlark..daseaevkealeragldelvkalpq........gleteiGerg.agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealr..elaegrtvllvaHrlalael 522
                  a+ +  a +        +        +le++  ++a +g   p l++   t+  g+ ++l+G  G GKst+l++  +++v     ++ v    ++++l++ ++     +    a v  + ll e  v+en + a +  + s++ + e++er ++ e   a ++        g+  e+ +r+ + LSgG r R  LA a+    +llllDEPt hL  ++   + ++l+  e+   r+v++v+H++  + +
  MMETSP1174-20130828|15260_1 204 AARVAAARE--------RsihgaykgALEASSFTLANPGGGaPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFaARQVGDVPANVTVhyvsQEVHLTDKTRVMTPGEcvvAADVERRLLLEEMEVLENAAEAGElgEESQQRLVEVMERLEMIESDTASRRaeellinlGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtsEVWADRIVVIVSHDRYFMDE 445
                  222333333........234455556***********99999******************************986256776666677777777666777777776655522245688888999999****995544114555567777777666554433322011111115666666665468****************************************9997225669**********988765 PP

  == domain 2    score: 84.2 bits;  conditional E-value: 2.9e-26
    TIGR02857 320 s..............slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlala 520
                                  +++++vs+ y+g     ++ ++ v ++++++l+G+ G GK+tl+kl+lg ++pteG++++  ++  +l +++  +qi         ++    + + +   +  +  ++  l  +g++     +++g++      +a LSgGqr R+aLA +  ++ ++l+lDEPt +LD e+ a++ ++++++ eg +v+ v+H++  +
  MMETSP1174-20130828|15260_1 544 ElplelksggelpgfIVQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHHADQIDLELTPLEYMQREFPAAVGVTAYEHLQ-RLRGHLAGCGVTGGGGPVGSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF-EG-AVVCVSHDQFFV 755
                  13334444556666689*************99********************************************88877777778899999865444456777788888887766655.59********************999999***********************************************995.44.688899998665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.7   5.3e-20   3.7e-18      11     212 ..     234     455 ..     223     465 .. 0.70
   2 !   21.6   0.0   3.4e-07   2.3e-05      31      77 ..     590     636 ..     565     657 .. 0.86
   3 !   41.0   0.0     4e-13   2.8e-11     128     215 ..     686     770 ..     681     780 .. 0.87

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 5.3e-20
    TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGll...apdaGevdlagadlkal.srrararrvalveqdsdaevpl.......svrdvvalGriPhrslf.......aadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldg 212
                   gg ++++d  +t   G   gl+G nG Gkst+lr  a       p++ +v++ +++++   + r+ +    +v  d++  + l       ++ ++  lG    + l          +sd  +  ++++l + + s +l +r l++lsGG r r+ la a+  +P lllldePtnhl ++a + l + +++        vv+  hd  +  +vc +v+ ++g
  MMETSP1174-20130828|15260_1 234 GGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQvgdVPANVTVHYVSQEVHLTdKTRVMTPGECVVAADVERRLLLeemevleNAAEAGELGEESQQRLVevmerleMIESDTASRRAEELLINLGFSdELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEvWADRIVVIVSHDRYFMDEVCTDVLHISG 455
                  58899******************************99876522247778888888887633123333333334444433333220000011333444466544433331111111345666677788888888876369******************************************99999888765334555677778**********99987765 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3.4e-07
    TIGR03873  31 gllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrv 77 
                   llG nG Gk+tl++l+ G l+p++Gev +  +   al  ++ a ++
  MMETSP1174-20130828|15260_1 590 VLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHHADQI 636
                  69**************************9988877777776666655 PP

  == domain 3    score: 41.0 bits;  conditional E-value: 4e-13
    TIGR03873 128 ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                  ++l +    +lsGG+r rv la    +eP++l+ldePtn ld+++  +l   v+     + +vv   hd  +  +++++ +v++gG v
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF---EGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  5666667789********************************99988888888888...67788889******************987 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   8.5e-14   5.9e-12      15     211 ..     237     454 ..     229     457 .. 0.74
   2 !   32.5   0.0     2e-10   1.4e-08       1      66 [.     559     624 ..     559     637 .. 0.91
   3 !   37.2   0.0   7.6e-12   5.3e-10     126     211 ..     684     766 ..     682     769 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 8.5e-14
    TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgae...kpsrGevevagedvarlrerelpllRrkigvvfqDf..k.llkdrtvlenvala...........l....evrgkkeeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervkkrvlele 211
                  +  L+d   ++ +g  + l+G+ G Gk+t+l+   +++    p + +v+   ++v+  ++ ++ +      vv  D   + ll+++ vlen a a           +    +++  ++++ ++r ee+l  +g++d  +  p e+lsgG + R+ +a ai  +P+lll DePt  l  +    + + lk+ +  +   v++++hd+ ++++v + vl+++
  MMETSP1174-20130828|15260_1 237 APLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQvgdVPANVTVHYVSQEVHLTDKTRVMTPGE--CVVAADVerRlLLEEMEVLENAAEAgelgeesqqrlVevmeRLEMIESDTASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVwADRIVVIVSHDRYFMDEVCTDVLHIS 454
                  5678999999999*******************998875222567777777788887777666655444..5555554224378899*****996522222222221111113445567788999**************9999467*****************************9998777776666666554145678999********9999888875 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2e-10
    TIGR02673   1 iielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedv 66 
                  i++++ vs++y++     ++ ++ +++ + + l G+ G Gkttl+kl+lg ++p++Gev+++ ++ 
  MMETSP1174-20130828|15260_1 559 IVQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQAR 624
                  799**********************************************************97764 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 7.6e-12
    TIGR02673 126 gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                  g++d +++ + +lsgG + Rva+a    ++P++l+ DePt nlD e    + +l  ++++   +v+ ++hd+ +v+++++  l ++
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLES---VAALADSVKAFEGAVVCVSHDQFFVNQISNEALVVN 766
                  67788889999*********************************876...555666666666789999*******99988877665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.8e-05    0.0033       7      39 ..     239     271 ..     234     311 .. 0.88
   2 !   35.7   0.0   1.8e-11   1.3e-09     100     186 ..     351     439 ..     343     442 .. 0.87
   3 !   26.7   0.0     1e-08     7e-07       9      52 ..     577     620 ..     569     630 .. 0.87
   4 !   36.7   0.0   8.9e-12   6.2e-10     116     186 ..     684     751 ..     681     754 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.8e-05
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhln 39 
                   l++   ++ rg++ +l+G+nG Gkst+l+ ++
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFA 271
                  6777788899*******************9987 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.8e-11
    TIGR01166 100 seaeverrvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre.eGktvvisthd 186
                  + + ++rr +e l  ++ s +l++rp + lsgG + r+ +a+a+  rpd+llldePt  l  + +  l++ l+  +  + + vvi +hd
  MMETSP1174-20130828|15260_1 351 ESDTASRRAEELLINLGFSdELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVwADRIVVIVSHD 439
                  567789999********86369*****************************************99999999987654155667788888 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1e-08
    TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld 52 
                  ++ ++ v+  ++++llG+nG Gk+tl++ + G l P++G+v ++
  MMETSP1174-20130828|15260_1 577 SNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  667888999999****************************9876 PP

  == domain 4    score: 36.7 bits;  conditional E-value: 8.9e-12
    TIGR01166 116 disgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  +i++l++ p+  lsgG++ rva+a++   +p++l+ldePt +ld + +  l++ ++ ++  G  vv  +hd
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFE--G-AVVCVSHD 751
                  68999********************999*****************99988888777653..3.45666676 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.6e-06   0.00039     459     513 ..     216     270 ..     181     284 .. 0.83
   2 !   25.9   0.0   8.6e-09     6e-07     602     666 ..     378     444 ..     366     451 .. 0.89
   3 !   34.4   0.0   2.3e-11   1.6e-09     466     527 ..     560     620 ..     524     638 .. 0.90
   4 !   39.1   0.0   8.8e-13   6.1e-11     602     679 ..     694     770 ..     683     788 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.6e-06
    TIGR03375 459 reklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllkll 513
                  +   kG++e ++ +++ p+   + L++  +++  G   ++iGr+G GKst+l+  
  MMETSP1174-20130828|15260_1 216 HGAYKGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAF 270
                  4567899999999999***********************************9975 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 8.6e-09
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLk..elladkTlvlvtHrtslLe 666
                  e+LSgG r    la a+   p++llLDEPt++l  ++ + l ++Lk  e+ ad+ +v+v+H   +++
  MMETSP1174-20130828|15260_1 378 EALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtsEVWADRIVVIVSHDRYFMD 444
                  57*******************************************8334667*********887775 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 2.3e-11
    TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlld 527
                  ++++ vsf+Yp+      +n ++ + + +++ ++G++G GK+tl kl+lg ++pteG+v + 
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGC-PLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  5899******997.56799****************************************985 PP

  == domain 4    score: 39.1 bits;  conditional E-value: 8.8e-13
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslL.elvdriivldkGri 679
                  ++LSgGQr  vala +  k+p+il+LDEPt++lD +s + l +++k++     +v v+H + ++ ++ +  +v++ G +
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFE--GAVVCVSHDQFFVnQISNEALVVNGGAV 770
                  68******************************************99874..5688888887766245667777777765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   3.9   4.8e-14   3.3e-12     299     529 ..     183     439 ..     178     440 .. 0.70
   2 !   31.8   0.0   1.9e-10   1.3e-08     330     396 ..     549     621 ..     470     636 .. 0.81
   3 !   38.6   0.0   1.5e-12   1.1e-10     468     529 ..     692     751 ..     682     752 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4.8e-14
    TIGR02868 299 rvraaaeRieevldak...vevaeasapaaeaaas...ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlalla.glldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda.............tdeellaaLervgLad......wlra..LpdGldtklgegg.arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                  + ++aaeR+e   ++     e+a ++a+++         k  le++  + + pg+ +  l++   +l  G++  ++G+ G+GKst+l ++a + +     +vt+  vs    +e ++    +v+     + +++v   l+l + ++             +++ l +++er ++ +       +++  ++ G + +l ++  ++lSGG r R +lA a+ a  ++llLDEPt hL  ++   l ++L   ++ ++r vv+v+h+
  MMETSP1174-20130828|15260_1 183 KKASAAERVERQKAELemeLEAARVAAARERS--IhgaYKGALEASSFTLANPGGGApLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAaRQVGDVPANVTVHYVS----QEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVlenaaeagelgeeSQQRLVEVMERLEMIEsdtasrRAEEllINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtsEVWADRIVVIVSHD 439
                  45567777773322222112333333333322..233578899999***999999888***************************99876415555455555554432....2334555566666666677777777777777766666666677667777778888777776431111113344434679999*99986479*******************************************9778889999******7 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.9e-10
    TIGR02868 330 s......ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldg 396
                           + +++r++s++ypg +  +++ ++ +++ +r+ ++G  G GK+tL++l++g l p +Gev +  
  MMETSP1174-20130828|15260_1 549 LksggelPGFIVQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  13343334566899*******************************************************9865 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 1.5e-12
    TIGR02868 468 ggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                   +a+lSGG+r R+alA +  ++  +l+LDEPt +LD e  ++l + +  a eg +vv v+h+
  MMETSP1174-20130828|15260_1 692 PAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVK-AFEG-AVVCVSHD 751
                  5899**********************************9999876654.4444.57777775 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.5       8.1   5.6e+02     163     219 ..      16      72 ..       3      94 .. 0.59
   2 !   13.1   0.0   7.8e-05    0.0054     313     364 ..     219     270 ..     200     283 .. 0.91
   3 !   25.1   0.0   1.9e-08   1.3e-06     435     516 ..     361     442 ..     334     460 .. 0.74
   4 !   20.9   0.0   3.4e-07   2.4e-05     333     378 ..     575     620 ..     554     635 .. 0.87
   5 !   47.9   0.0   2.3e-15   1.6e-13     453     534 ..     694     773 ..     689     782 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 8.1
    TIGR01842 163 aatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsa 219
                   + ++k  ++t + +k++ ++d a++  e ++  +m k+  ++  ++++kal+ ++ 
  MMETSP1174-20130828|15260_1  16 DIHHRKRVHTTVTVTKSSAMADFAKQKEERLKRESMAKKEAAKKAQKEAKALKEKKR 72 
                  455555555566666666666666666666666666666555555555555554443 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 7.8e-05
    TIGR01842 313 pegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarll 364
                   +g le+++ +l++p++ ++ l++   +l  G + ++iG  g Gks++ r  
  MMETSP1174-20130828|15260_1 219 YKGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAF 270
                  578999******************************************9975 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 1.9e-08
    TIGR01842 435 elilrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsl 516
                  el+++l  G+  e+ ++  +aLsgG r R  La a++  P l++LDeP   L  +  + la+ lk+    + ++vv+++h    
  MMETSP1174-20130828|15260_1 361 ELLINL--GFSDELRSRpLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVwADRIVVIVSHDRYF 442
                  555544..5555554441479********************************9999999999987664256777888886544 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 3.4e-07
    TIGR01842 333 tlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlD 378
                   + + +f ++a + ++++G  g Gk++L++l++G  +p++G+vr+ 
  MMETSP1174-20130828|15260_1 575 LFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  567899**************************************96 PP

  == domain 5    score: 47.9 bits;  conditional E-value: 2.3e-15
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlkdGalkaf 534
                  aaLsgGqr R+aLa   + +P+++vLDeP  nLD e  +ala+    +ka + +vv ++h    ++++ ++ lv++ Ga+k+ 
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADS---VKAFEGAVVCVSHDQFFVNQIsNEALVVNGGAVKKV 773
                  78***************************************986...67778999*****98888776378999999999875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.3e-05    0.0037      11      48 ..     235     272 ..     224     298 .. 0.84
   2 !   20.9   0.1   7.2e-07     5e-05      90     187 ..     343     440 ..     334     453 .. 0.82
   3 !   69.8   0.1   7.2e-22     5e-20      15     189 ..     575     754 ..     569     763 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.3e-05
    TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaG 48 
                  g+  lle+  ++l+ G    + G+nG+GK+t+LR  a 
  MMETSP1174-20130828|15260_1 235 GGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA 272
                  677899999*************************9885 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.2e-07
    TIGR01189  90 alEnLkfyaallqseqktveealekvgLsg.ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella.aHlargGivllathqd 187
                  ++E L+  +++++s    +ee l ++g s+ l  +p+++Ls G + R  la  + ++  l +LDEPt  l  ++v  la+ l+ + +  + iv++ +h  
  MMETSP1174-20130828|15260_1 343 VMERLEMIESDTASR--RAEELLINLGFSDeLRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtSEVWADRIVVIVSHDR 440
                  677777777776644..599999999997637899*****************************************999988624677788888888876 PP

  == domain 3    score: 69.8 bits;  conditional E-value: 7.2e-22
    TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelae.qrdelaee.......llylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlg 189
                  l+++ +f ++a   +v+ G+nG GKttL++++ G l+p++Gev+++ ++    ++++ a++       l y+  +      ++a E L+ ++  l+    t        g+++l+++p+a+Ls Gq+ R+ala +  ++  + +LDEPt +lD e+v+ la+ ++a     G+v+  +h +  
  MMETSP1174-20130828|15260_1 575 LFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVAlVNQHHADQidleltpLEYMQREFPAAVGVTAYEHLQRLRGHLAGCGVTGGGGPVGSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF---EGAVVCVSHDQFF 754
                  89999**************************************998554332022233333000000034444444444445555555555555544443444445556899**************************************************99975...6888888887765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.7     6e-13   4.2e-11      16     179 ..     239     426 ..     229     467 .. 0.78
   2 !   58.5   0.0     2e-18   1.4e-16       3     215 ..     561     775 ..     559     790 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6e-13
    TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeak..................egeikvaGldl...rrapkealarlGvvfqq.stlDldl.sveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                   l+d + t+ +g+   L+G nG Gkst++   +     +                  ++++   G  +   + +++  l+++ v   + ++ +l   s ++ ++    L+ + + +a++r ee+l +lg+++  +++ +++L+GG r r  +a a+  +P+lLLlDe+t  L i++ + l +e+++  
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQVGDvpanvtvhyvsqevhltdKTRVMTPGECVvaaDVERRLLLEEMEVLENAaEAGELGEeSQQRLVEVMERLEMIESDTASRRAEELLINLGFSDELRSRpLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSE 426
                  5788889999*****************99887766655578999***********88666766676541113455667889988755413445544144555678899************************9998879***********************************99998888877643 PP

  == domain 2    score: 58.5 bits;  conditional E-value: 2e-18
    TIGR03864   3 eveglsfaygkrral.ddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfq..qstlDldlsveqnl.ryhaaLhGlsraeaeerieealarlg...........laeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGa 215
                  +++g+sf+y  +  l ++ ++ v+  + ++LLG nG Gk+tL++l+ + ++ +ege+++  +          ar+ +v q  +  +Dl+l+  + + r + a  G++  e  +r++ +la  g           +++ ++  + +L+GG+r rv +a     eP++L+lDe+t  LD+es aal ++v++    + ++v     +v+ +++e   +v++ G v++  +
  MMETSP1174-20130828|15260_1 561 QMRGVSFNYPGCPLLfSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ----------ARVALVNQhhADQIDLELTPLEYMqREFPAAVGVTAYEHLQRLRGHLAGCGvtggggpvgsgIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFE-GAVVCVSHDQFFVNQISNE--ALVVNGGAVKKVAS 775
                  67889999976665537899*************************************99643..........233444441145578888766655245677789999999999998888765111111111116677788899********************************************9987.899***********99875..57788888887655 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   1.8e-15   1.3e-13      24     224 ..     237     453 ..     224     463 .. 0.83
   2 !   19.7   0.0   1.4e-06    0.0001      32      74 ..     581     623 ..     573     640 .. 0.82
   3 !   33.4   0.0     1e-10   6.9e-09     144     229 ..     688     770 ..     681     789 .. 0.81

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.8e-15
    TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGl...ekPakGevsfrGqdlakldrkq.........rkafrrdvql....vfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
                  +++l++   +l +G + +l+Gr G Gkst+ r +      + Pa+ +v++  q++   d++          +  + r + l    v+ ++  a    +  ++ + e +++l+ ++     +r++ell  +++++e   +  + lsGG   r  +a a+ ++P l++lde    l +   + + + lk  +  +   +++++hd   +++++  vl +
  MMETSP1174-20130828|15260_1 237 APLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARqvgDVPANVTVHYVSQEVHLTDKTRvmtpgecvvAADVERRLLLeemeVLENAAEAGELGEESQQRLVEVMERLEMIESDTASRRAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVLHI 453
                  67899999**********************999865422268***********9987766541111111112335555544444477888888888889999******************************99999998899*******************************99988888888888888888889*************9998765 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.4e-06
    TIGR02769  32 lsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqd 74 
                  + + +   + llG+ G Gk+tl +l+lG   P++Gev+ + q 
  MMETSP1174-20130828|15260_1 581 FGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQA 623
                  5566667899***************************987665 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 1e-10
    TIGR02769 144 ldklPr.qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                  l+ +P+  lsGGq  r+++a     eP+++vlde   nldl   a+   l   +k +f  a++ ++hd   v++++++ lv+++G +
  MMETSP1174-20130828|15260_1 688 LQNVPAaALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAA---LADSVK-AFEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  666775269***********99999***************976444...344444.4556899*******************99976 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.5e-12     1e-10       7     212 ..     228     454 ..     223     457 .. 0.76
   2 !   23.8   0.0   9.8e-08   6.8e-06       2      66 ..     560     623 ..     559     636 .. 0.88
   3 !   33.4   0.0   1.2e-10   8.1e-09     127     214 ..     684     768 ..     681     770 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.5e-12
    TIGR00960   7 vskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgie...kpsaGkirvsgqdltklrdrevpflrrqiGivfqdfk.llsdrtvydnvala...........l....riiGvkgreieervsaalekvGlkdkakalPvq.lsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnr.aGttvlvathdenlveskrkrvltls 212
                   + a +g+  + l++ +  + +G    l+G  G Gkst+l+   +++    p++  +++  q++    + +v      +     + + ll++ +v++n a a           +    r+  ++++ +++r+++ l ++G++d  ++ P + lsgG + r  +a a+  +P lll dePt  l       + + l++ +  a   v++ +hd+ ++++    vl++s
  MMETSP1174-20130828|15260_1 228 FTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQvgdVPANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRlLLEEMEVLENAAEAgelgeesqqrlVevmeRLEMIESDTASRRAEELLINLGFSDELRSRPLEaLSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVwADRIVVIVSHDRYFMDEVCTDVLHIS 454
                  567778999999******************************9998622257788888888988877777776655554444434442678899****98662222222222111111223356788999*******************7559******************************98877777777776665245689999********9999998876 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 9.8e-08
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqd 66 
                  ++++ vs +y+g     + n ++ ++  + + l G+ G Gk+tl+kl+lg  +p++G++r+  q 
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGCPL-LFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQA 623
                  78899999**99887.899*****************************************98765 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 1.2e-10
    TIGR00960 127 GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                  G+kd ++     lsgG++ rva+a    ++P++l+ dePt nld e    + + ++ +     +v+  +hd+ +v++ ++  l+++ G
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF---EGAVVCVSHDQFFVNQISNEALVVNGG 768
                  555655656678********************************99766666655555...55788889**********999998777 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.2e-11   8.4e-10      12     203 ..     236     451 ..     229     468 .. 0.76
   2 !   22.2   0.0   2.5e-07   1.7e-05      16      63 ..     576     623 ..     560     636 .. 0.80
   3 !   35.5   0.0   2.1e-11   1.5e-09     122     226 ..     686     786 ..     683     790 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 1.2e-11
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllk...vksGeielegeditklkpeervkaGiayvp...qGreifpkltveenlelglealkkk..................ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladryl 203
                   + +l+d   ++ +g+   ++Grng+Gk+t+l+a  + +      + ++++ +++++ ++ ++ ++ G   v      r ++ ++ v en   + e  +++                  +++  ee++      +e+++R    LsGG +    +a a+ ++P lllLDePt+ +    +  +++ +k+ +   d  +++v +   f  e+   +l
  MMETSP1174-20130828|15260_1 236 GAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQVgdvPANVTVHYVSQEVHLTDKTRVMTPGECVVAadvERRLLLEEMEVLENAAEAGELGEESqqrlvevmerlemiesdtASRRAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVL 451
                  5667888889999999******************98765311145678899999999999999999998888722245778999*****985443332222112344454445554433344455666666778899999999*******************************999999999999999888888888888888888877776655 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.5e-07
    TIGR03410  16 lrdvslevekgevvavlGrngvGkttllkalvgllkvksGeieleged 63 
                  +++ ++ v++++ +++lG ng Gkttl+k ++g l+ ++Ge++++ + 
  MMETSP1174-20130828|15260_1 576 FSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQA 623
                  45778899999999****************************998664 PP

  == domain 3    score: 35.5 bits;  conditional E-value: 2.1e-11
    TIGR03410 122 kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeekvkk 226
                  k++++  +  LsGGq+  +a+a +  +eP++l+LDePt+ +    ++ +++ +k+ +     a++ v +   f+ +++++ lv++ G v +  + ++ +++++kk
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG----AVVCVSHDQFFVNQISNEALVVNGGAVKKVASFDAYRQRQLKK 786
                  6788888999********************************9999999998887765....7999999999*****************9999999988888876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6       5.5   3.8e+02     257     276 ..      52      71 ..      11     155 .. 0.61
   2 ?    6.7   0.0     0.012      0.82      16      38 ..     247     269 ..     239     274 .. 0.85
   3 ?   -1.7   0.1       4.3     3e+02     179     239 ..     282     341 ..     261     351 .. 0.63
   4 !   41.7   0.1   2.7e-13   1.9e-11      87     197 ..     341     453 ..     322     540 .. 0.85
   5 !   20.2   0.0   9.3e-07   6.4e-05      13      52 ..     580     619 ..     576     627 .. 0.90
   6 !   37.1   0.0   6.6e-12   4.6e-10     115     213 ..     686     781 ..     683     794 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 5.5
    TIGR01188 257 kvklkveeadetvkeileav 276
                   +k  +++a++++k++ e+ 
  MMETSP1174-20130828|15260_1  52 AKKEAAKKAQKEAKALKEKK 71 
                  22222222222222222222 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.012
    TIGR01188  16 veegevfglLGPnGAGKtttikm 38 
                  + +g  +gl+G nG GK+t+++ 
  MMETSP1174-20130828|15260_1 247 LVRGRSYGLIGRNGMGKSTMLRA 269
                  568999**************986 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 4.3
    TIGR01188 179 ltthyleeadkladrvaiidkGk.iiaedtpeeLKervgkevveverrdikelkkevsllaa 239
                  +t hy+ +  +l+d+  ++  G+ ++a+d  + L    + ev+e +  ++ el +e ++  +
  MMETSP1174-20130828|15260_1 282 VTVHYVSQEVHLTDKTRVMTPGEcVVAADVERRLL-LEEMEVLE-NAAEAGELGEESQQRLV 341
                  78888888888999999999997345666555554.12222322.44444455555544444 PP

  == domain 4    score: 41.7 bits;  conditional E-value: 2.7e-13
    TIGR01188  87 lellgelyglpkkeaeeraeellelvelke.aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaii 197
                  +e++ +l  ++ ++a +raeell  + + +  + ++++ +sgG r r  laa++ a+P++l LDEPt  L  ++   + + ++  +   +  +++ +h+ +  d+++  v  i
  MMETSP1174-20130828|15260_1 341 VEVMERLEMIESDTASRRAEELLINLGFSDeLRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWaDRIVVIVSHDRYFMDEVCTDVLHI 453
                  689999999**************99999862699************************************999988888887765544499999*****99999999888655 PP

  == domain 5    score: 20.2 bits;  conditional E-value: 9.3e-07
    TIGR01188  13 nlkveegevfglLGPnGAGKtttikmLttllkPdsGtarv 52 
                  ++ v++ + + lLG nG GKtt++k++ + l+P++G++r+
  MMETSP1174-20130828|15260_1 580 EFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRI 619
                  67788888899**************************998 PP

  == domain 6    score: 37.1 bits;  conditional E-value: 6.6e-12
    TIGR01188 115 keaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213
                  k+ ++ ++  +sgG+r r+ laa   ++P++l LDEPt  LD ++ +a+ d +++++    +++  +h+   +++++++  +++ G + +  + +  ++
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG---AVVCVSHDQFFVNQISNEALVVNGGAVKKVASFDAYRQ 781
                  66677788999****************************************9999875...678889*******************9988777666555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.7       1.1        76      87     156 ..      22      91 ..      17      98 .. 0.57
   2 !   41.2   0.0   4.5e-13   3.1e-11      23     212 ..     245     450 ..     235     458 .. 0.79
   3 !   21.3   0.0   5.5e-07   3.8e-05       5      64 ..     562     622 ..     558     637 .. 0.77
   4 !   35.2   0.0     3e-11   2.1e-09     133     228 ..     685     778 ..     682     784 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 1.1
    TIGR03411  87 svfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigm 156
                  +v+ ++tv++   +a  a+++  +l ++ ++k+e+++ ++  +    e+k++k+a lLs G k+    +m
  MMETSP1174-20130828|15260_1  22 RVHTTVTVTKSSAMADFAKQKEERLKRESMAKKEAAKKAQKEAKALKEKKREKQADLLSSGGKKGGLAAM 91 
                  5677777777777765544444333333333333333333333333456788999***999887555555 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 4.5e-13
    TIGR03411  23 lsveegelrviiGpnGaGkttllDvitGktr...pdeGsvlfkgkdltklkeaeiarlG...igRkfqkpsvfeeltvlenl....elalkadks...vlallfarlskeekerieevleligLeeka.dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellk..elakersvvvvehDmefvrelaekv 212
                   ++ +g    +iG nG Gk+t+l + + +     p++ +v + ++++  ++++++ + G   ++    +  ++ee+ vlen     el  +++++   v++ l +  s+++++r ee+l  +g +++  ++   +Ls G + +  ++  +  +p+llllDeP+  ++ +  +  a+ lk  e+  +r vv+v hD  f++e+ + v
  MMETSP1174-20130828|15260_1 245 CTLVRGRSYGLIGRNGMGKSTMLRAFAARQVgdvPANVTVHYVSQEVHLTDKTRVMTPGecvVAADVERRLLLEEMEVLENAaeagELGEESQQRlveVMERLEMIESDTASRRAEELLINLGFSDELrSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtsEVWADRIVVIVSHDRYFMDEVCTDV 450
                  55666667789*************998765312267788888899998888888887775557889999999999999999833334555555541114455566677888899999999999988761567899*************************************9999887336899***************998776 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 5.5e-07
    TIGR03411   5 vedvsvsfdgfkal.ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                  +++vs ++ g   l ++ ++ v++++  v++G nG Gkttl+ ++ G   p+eG+v ++ +
  MMETSP1174-20130828|15260_1 562 MRGVSFNYPGCPLLfSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ 622
                  5666666666554326788999999999****************************99866 PP

  == domain 4    score: 35.2 bits;  conditional E-value: 3e-11
    TIGR03411 133 LeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                  +++ ++  a++Ls Gq+ ++ ++ +  +ep++l+lDeP+  +  e  +  a+ +k+ +   +vv v hD  fv++++++  v++ G+v    s+d 
  MMETSP1174-20130828|15260_1 685 IKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFE--GAVVCVSHDQFFVNQISNEALVVNGGAVKKVASFDA 778
                  6788999*********************************999888888888888765..589***********************9977777665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.5e-10   3.1e-08     310     497 ..     250     449 ..     240     456 .. 0.65
   2 !   15.5   0.0   1.5e-05     0.001     303     343 ..     579     619 ..     559     627 .. 0.90
   3 !   45.3   0.0   1.4e-14   9.4e-13     425     509 ..     693     773 ..     684     784 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 4.5e-10
    TIGR03269 310 keifGlvGtsGaGkttlskilaG.vleptsGevevrvGdewvdmtkk.gvlerGrakkyiGllhqeyalyphrtvlenlteaigl...............el.pdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdr 497
                  +  +Gl+G  G Gk+t+ + +a   +     +v+v+   + v +t+k +v++ G +   +    ++  l    +vlen +ea  l               e+  ++ a r+a   l   Gf++e       +  + ls G r r  la  +   p +++ldept  +   + + +a+ +  +    ++  vivshd  f+ evc  
  MMETSP1174-20130828|15260_1 250 GRSYGLIGRNGMGKSTMLRAFAArQVGDVPANVTVHYVSQEVHLTDKtRVMTPGECV--VAADVERRLLLEEMEVLENAAEAGELgeesqqrlvevmerlEMiESDTASRRAEELLINLGFSDELR----SRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTD 449
                  556888888888888777766541455556667777666777777651445555433..3333444555566666666666544311111100100000022123456666666777777766544....3445689****************************9986666677888888888899999**************65 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.5e-05
    TIGR03269 303 vslevkekeifGlvGtsGaGkttlskilaGvleptsGevev 343
                   ++ v+ k    l+G  G Gkttl k+++G l pt+Gev +
  MMETSP1174-20130828|15260_1 579 AEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRI 619
                  5677788888889*************************976 PP

  == domain 3    score: 45.3 bits;  conditional E-value: 1.4e-14
    TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivki 509
                  +  ls G+r rvala v  kep+i++ldept  +d  +  ++a+s+    + +e + v vshd  fv+++ + a ++  G + k+
  MMETSP1174-20130828|15260_1 693 AAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSV----KAFEGAVVCVSHDQFFVNQISNEALVVNGGAVKKV 773
                  4579*******************************98888888887....568999***************99988888877766 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   6.3e-14   4.4e-12      23     208 ..     242     446 ..     236     457 .. 0.76
   2 !   17.4   0.0   7.8e-06   0.00054      21      77 ..     576     632 ..     573     641 .. 0.86
   3 !   34.8   0.0   3.7e-11   2.5e-09     136     216 ..     690     767 ..     683     772 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 6.3e-14
    TIGR02211  23 gvsleiekgelvaivGssGsGkstllhllggl...dkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskk...............eakerakellekvglekrinkkpse.lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl 208
                  +    + +g + +++G  G Gkst+l  +++    d p++ +v    +e++   +++  +  +  +        ll ++++len a    ++++s++                a +ra+ell ++g+++ +  +p e lsGG r r  +a a+  +P+l+l dePt +l  ++   + + l+  +   +  +++v+hd+ +++++
  MMETSP1174-20130828|15260_1 242 DAACTLVRGRSYGLIGRNGMGKSTMLRAFAARqvgDVPANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVLENAAEAGELGEESQQrlvevmerlemiesdTASRRAEELLINLGFSDELRSRPLEaLSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEV 446
                  5566778899999*************999985334889999999999999998888888888888888889999999*******986544443332211111111111111157889******************7659******************************876655555555555555667799*****9988764 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 7.8e-06
    TIGR02211  21 lkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssner 77 
                  +++ ++ +++   + ++G+ G Gk+tl+ l+ g  +pt+Gev ++ +   +l ++++
  MMETSP1174-20130828|15260_1 576 FSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHH 632
                  6788999999999*****************99999********99887766666555 PP

  == domain 3    score: 34.8 bits;  conditional E-value: 3.7e-11
    TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrv.lelkd 216
                  n  +++lsGG+r rva+a    ++P++++ dePt nld ++  ++ + ++    + + a++ v+hd+ +++++++  l ++ 
  MMETSP1174-20130828|15260_1 690 NVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVK----AFEGAVVCVSHDQFFVNQISNEaLVVNG 767
                  556789********************************998777655554....566799**********999865144444 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00065     0.045      13      46 ..     239     272 ..     234     300 .. 0.86
   2 !   29.3   0.0   1.6e-09   1.1e-07     108     199 ..     352     445 ..     332     453 .. 0.80
   3 !   12.4   0.0   0.00026     0.018      13      70 ..     575     632 ..     568     651 .. 0.78
   4 !   37.3   0.0   5.9e-12   4.1e-10     124     200 ..     685     758 ..     682     764 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00065
    TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgl 46 
                  +l++   ++ +G+++ ++G+ G GKst+L   + 
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA 272
                  6888899999*******************87765 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 1.6e-09
    TIGR03608 108 kkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaek 199
                    + +++ +e+l ++g+ ++  ++ +  lsgG + R  la +++  ++l+l DEPt  L       + + lk     ++++++iv Hd + +++
  MMETSP1174-20130828|15260_1 352 SDTASRRAEELLINLGFsDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSeVWADRIVVIVSHDRYFMDE 445
                  455667788999999*944455677788*******************************99888888877765414689*********997654 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00026
    TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskka 70 
                  ++++ ++ + + + + ++Ge G GK+tl+ ++    ++ +g+v ++ + + +l ++++
  MMETSP1174-20130828|15260_1 575 LFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHH 632
                  578889999999999**************97655556667999999988777655543 PP

  == domain 4    score: 37.3 bits;  conditional E-value: 5.9e-12
    TIGR03608 124 lekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                  ++  ++     lsgG++ Rvala + +ke+++++ DEPt +LD ++ +++ + +k     +  +++v Hd+   ++ 
  MMETSP1174-20130828|15260_1 685 IKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKA---FEGAVVCVSHDQFFVNQI 758
                  55666777789********************************9987777766655...556899*****9877765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1     0.007      0.49       5      28 ..     249     272 ..     245     294 .. 0.82
   2 ?   -2.2   0.0       8.7   6.1e+02     145     193 ..     277     325 ..     273     330 .. 0.81
   3 !   31.7   0.0   3.6e-10   2.5e-08     104     188 ..     370     455 ..     351     472 .. 0.87
   4 !   51.0   0.3   4.6e-16   3.2e-14       9     191 ..     589     770 ..     581     784 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.007
    TIGR03771   5 kGellgllGpnGaGkttllrailg 28 
                  +G   gl+G nG Gk+t+lra  +
  MMETSP1174-20130828|15260_1 249 RGRSYGLIGRNGMGKSTMLRAFAA 272
                  677889**************9754 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 8.7
    TIGR03771 145 dlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvad 193
                  d+p++ ++  + +e+   +++ +mt  + + a ++  r++l + +v+ +
  MMETSP1174-20130828|15260_1 277 DVPANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVLEN 325
                  6777777777888888889999999999999999999999988888765 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 3.6e-10
    TIGR03771 104 teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellv.elfeelagegtailmtthdlaeavatcdrvvllng 188
                   el++rp+  lsGG r r ++a a+  +p lllldep   l + +   l+ el ++   +++ +++++hd     ++c  v+ + g
  MMETSP1174-20130828|15260_1 370 DELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLArELKTSEVWADRIVVIVSHDRYFMDEVCTDVLHISG 455
                  589***************************************9998887537778888999999******9988889988887765 PP

  == domain 4    score: 51.0 bits;  conditional E-value: 4.6e-16
    TIGR03771   9 lgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdf...pidveqtvlsGragliGllrrpkkadfaa.....vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                  + llG nG Gkttl++ +lg +++++G+v++  +      +++  v q h    d    p++  q  +    g   +    +   + a              +++l++ p   lsGGqr rv +a     +p++l+ldep   ldl s   l++ +++    + a++ ++hd     ++++  +++ng  v
  MMETSP1174-20130828|15260_1 589 IVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ------ARVALVNQHHADQIDLeltPLEYMQREFPAAVGVTAYEHLQRLRGHLAgcgvtGGGGPVGSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKA---FEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  78*****************************996......678899999988888633355555554444444333322222223322111002334456789***********************99*****************9888887776655...566899999999998899999999998766 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.2e-05    0.0036     440     523 ..     211     297 ..     183     302 .. 0.81
   2 !   19.0   0.0   1.2e-06   8.4e-05     587     626 ..     378     417 ..     374     474 .. 0.76
   3 !   23.4   0.0   5.8e-08     4e-06     432     511 ..     539     618 ..     533     629 .. 0.89
   4 !   30.0   0.0   5.8e-10   4.1e-08     587     670 ..     694     778 ..     688     784 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.2e-05
    TIGR03797 440 eekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgF...ekPesGsvlyDGqdlekldvq 523
                  +e++  g  +Ga+e ++ t +    g+  L+d +++   G   +++G  G GKSt+lr   +    + P++ +v+y  q+++  d++
  MMETSP1174-20130828|15260_1 211 RERSIHGAYKGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARqvgDVPANVTVHYVSQEVHLTDKT 297
                  4556678999************99**********************************87653222667777777777777666655 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.2e-06
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQai 626
                  ++lSGG r R ++A a+  +P +ll+DE T  L  ++   
  MMETSP1174-20130828|15260_1 378 EALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMW 417
                  689***************************9886554444 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 5.8e-08
    TIGR03797 432 leaepEvdeekvdpgkLsGai.evdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvl 511
                  l++  E   e ++ g+L G i +++ v+F+Y +  pl +++  + + +   + + G+ G GK tl++l+Lg  +P++G+v 
  MMETSP1174-20130828|15260_1 539 LQEDMELPLELKSGGELPGFIvQMRGVSFNY-PGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVR 618
                  56666777777889999998637999*****.99********************************************995 PP

  == domain 4    score: 30.0 bits;  conditional E-value: 5.8e-10
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvveqGsyee 670
                  ++lSGGQr R+ +A    + P+il++DE T  LD ++ a+  +s+++++ + + + H    +++ ++  lv++ G v +  s++ 
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAVVCVSHDQFFVNQiSNEALVVNGGAVKKVASFDA 778
                  68*******************************************************9888877346789999999998888876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0   5.2e-14   3.6e-12      17     216 ..     239     450 ..     231     457 .. 0.71
   2 !   13.8   0.0   8.7e-05    0.0061       2      64 ..     560     622 ..     559     639 .. 0.85
   3 !   29.2   0.0   1.8e-09   1.3e-07     134     190 ..     684     740 ..     682     777 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 5.2e-14
    TIGR02315  17 alknvnleikkGelvaviGlsGaGkstllrsin.rlveissgsille..gkevtklkkkelrklrkkigmi...fqeynlierltvlenvL.sgrlgakstlk..sllglf....seedkekAlelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadri 216
                   l++   ++ +G   ++iG+ G Gkst+lr+   r v +  ++++++   +ev+ + k   r +     ++        l+e+++vlen    g lg +s+ +  ++++++    s++  ++A elL ++g+++   +r  ++LsGG + R  +a a+  +p+l+l DEP+  L  ++   + + lk+     + +v++  H+  +  + ++ +
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAaRQVGDVPANVTVHyvSQEVHLTDK--TRVMTPGECVVaadVERRLLLEEMEVLENAAeAGELGEESQQRlvEVMERLemieSDTASRRAEELLINLGFSDELRSRpLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDV 450
                  67888889999*******************9862556655565555411666665554..444444444440014455689********873589998765441144444411113445678999*******99988884699*****************************998888777777777776666666777667766666666555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.7e-05
    TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegk 64 
                  ++++ +s +yp+    + n ++ ++    ++++G+ G Gk+tl++ + +  ++++g++ ++ +
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ 622
                  677888999998899999****************************9999999***9987654 PP

  == domain 3    score: 29.2 bits;  conditional E-value: 1.8e-09
    TIGR02315 134 glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr 190
                  g+++l++  a +LsGGq+ Rva+a    ++p++++ DEP+  LD +s   + d +k 
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKA 740
                  789999999***********************************9999888887775 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00048     0.034      11      56 ..     228     272 ..     224     299 .. 0.79
   2 !   29.9   0.0   1.1e-09   7.4e-08     120     219 ..     350     450 ..     336     454 .. 0.78
   3 !   15.0   0.0     4e-05    0.0028      24      88 ..     576     639 ..     571     660 .. 0.83
   4 !   29.0   0.0   2.1e-09   1.5e-07     142     221 ..     688     764 ..     685     767 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00048
    TIGR02324  11 filhqqgGvklpvlkevsleveaGelvalsGksGaGkstllkslya 56 
                  f+l +  G   p l++   ++  G    l+G+ G Gkst+l++  a
  MMETSP1174-20130828|15260_1 228 FTLANP-GGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA 272
                  555555.445788999999***********************9765 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.1e-09
    TIGR02324 120 vereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakarga....aligifhdeevrelvadre 219
                  +e+++a  +a+ell +l  ++ L s +    sGG + R  +a a+ a   +LLLdePt  L    + +v+ l +e+k++ +     ++ + hd+   + v++  
  MMETSP1174-20130828|15260_1 350 IESDTASRRAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLS---ITAVMWLARELKTSEVwadrIVVIVSHDRYFMDEVCTDV 450
                  78899******************************************5557889*******4...556788888888876532213444557777766666655 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 4e-05
    TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevR 88 
                  +++ ++ v+a   ++l G+ G Gk tl+k + ++  p  g+++++ +  +  lv+ ++ + +++ 
  MMETSP1174-20130828|15260_1 576 FSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVA-LVNQHHADQIDLE 639
                  5788999***********************************997765554.7777666666555 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 2.1e-09
    TIGR02324 142 LWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrele 221
                  L +++ a  sGG + Rv +a    ++  iL+LdePt  Ld    + v  l +++ka   a++ + hd++  +++++  l 
  MMETSP1174-20130828|15260_1 688 LQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDL---ESVAALADSVKAFEGAVVCVSHDQFFVNQISNEALV 764
                  6678999**************99998889**********75...4578999******************99999988775 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0       0.1         7      25      45 ..     252     272 ..     240     322 .. 0.77
   2 !   30.2   0.0   8.5e-10   5.9e-08     104     279 ..     353     529 ..     341     537 .. 0.74
   3 !   16.0   0.0   1.7e-05    0.0012      16      57 ..     579     620 ..     576     632 .. 0.90
   4 !   34.8   0.0   3.2e-11   2.2e-09     120     222 ..     684     782 ..     683     792 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.1
    TIGR02142  25 vtalFGrsGsGktslirliaG 45 
                    +l Gr G Gk++++r+ a 
  MMETSP1174-20130828|15260_1 252 SYGLIGRNGMGKSTMLRAFAA 272
                  56899************9885 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 8.5e-10
    TIGR02142 104 raeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle.dG.rvkaagkleevlaskdls.llekeeagsvleatvaeldekygltalalgdgallvskkeeavgaelrlrvka 279
                  ++++rr  ee +i+l   ++L +R  + LsGG + R  ++ A+ ++P+LLl+DeP   L  +    +   L+  +   +  ++ vsH+   +  +   v+ +  +  r++       ++a +  +  +++e+++++   ++++l+e y+   +++g++  +++k + +  ++ +l+v+a
  MMETSP1174-20130828|15260_1 353 DTASRR-AEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVLHISgAArRLTQSHGNYTMWAARRAEqKAAFEKETALRANEIDRLKE-YAGHGFKYGGSGSQINKMKMKEKQAEKLEVQA 529
                  444442.3444555555578889999********************************9998777776667666666777899999999888888777776642331454444445666666565477778888888878877765.55577888888889999999999999999987 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 1.7e-05
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivld 57 
                  +++ + +k ++ l G+ G Gkt+l++l+ G ++p+ege+ + 
  MMETSP1174-20130828|15260_1 579 AEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  56778999999***************************9886 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 3.2e-11
    TIGR02142 120 giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222
                  gi+ L +  ++ LsGG + Rva++     +P++L++DeP   LD ++ +     L    + ++  ++ vsH+   v++++++ +v++ G vk  ++ ++  ++
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAA----LADSVKAFEGAVVCVSHDQFFVNQISNEALVVNGGAVKKVASFDAYRQR 782
                  577788888999********************************987655....55666778999***************************99988876555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   1.3e-09   9.3e-08      16     202 ..     240     451 ..     234     472 .. 0.74
   2 !   13.4   0.0   0.00012    0.0085      19      63 ..     579     623 ..     564     636 .. 0.86
   3 !   35.6   0.0   2.1e-11   1.4e-09     121     216 ..     686     777 ..     683     785 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.3e-09
    TIGR00968  16 lddvdlevktGslvallGpsGsGkstllrviaGlekpd...sGril.....leGrdvtrvkv.rdreiGfvfqhyalfkhltvrdniafGleir...............kkdkakikakveellelvqle.klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadriv 202
                  l+d   ++  G+  +l+G  G Gkst+lr+ a  +  d   + ++      ++ +d trv +  +  +    ++  l++ + v +n a   e+                 +++ +  ++ eell  ++++ +l +r  + lsGG r r  la a+   p++llldep   l       l + l+      +   v+v+hd+    ev  ++ 
  MMETSP1174-20130828|15260_1 240 LEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQVGDvpaNVTVHyvsqeVHLTDKTRVMTpGECVVAADVERRLLLEEMEVLENAAEAGELGeesqqrlvevmerleMIESDTASRRAEELLINLGFSdELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVL 451
                  667777888899999****************997655511144444111113344555544313445566677889999*******99766655445577777777665566777788999999877775278999999*******************************999887777777777666667788999999988778777665 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00012
    TIGR00968  19 vdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrd 63 
                   ++ v   s + llG  G Gk+tl++++ G   p++G+++++ + 
  MMETSP1174-20130828|15260_1 579 AEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQA 623
                  677788889999****************************99775 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.1e-11
    TIGR00968 121 eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsae 216
                  ++l++   + lsGGqr rvala     ep++l+ldep   ld +    l   ++ +      + v v+hdq    +++++  v++ G +++v s +
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG----AVVCVSHDQFFVNQISNEALVVNGGAVKKVASFD 777
                  5677777889********************************9888877777766554....5699************************998865 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       8.3   5.8e+02     112     147 ..      50      85 ..      23      97 .. 0.58
   2 ?   -1.5   0.0         5   3.4e+02      32      53 ..     251     272 ..     239     298 .. 0.74
   3 !   36.8   0.0   9.6e-12   6.7e-10     109     208 ..     346     447 ..     334     456 .. 0.82
   4 !   14.7   0.0   5.2e-05    0.0036      23      76 ..     578     632 ..     573     643 .. 0.79
   5 !   33.3   0.0   1.1e-10   7.4e-09     133     206 ..     687     756 ..     681     771 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 8.3
    TIGR02982 112 klsakeakakaeelleavgleerldykpedl.sgGqk 147
                  ++++kea++ka++  +a+  e++ +++++ l sgG+k
  MMETSP1174-20130828|15260_1  50 SMAKKEAAKKAQKEAKALK-EKKREKQADLLsSGGKK 85 
                  3444555555555444433.33445555555245555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 5
    TIGR02982  32 eiviltGpsGsGkttlltligg 53 
                      l G  G Gk t+l   ++
  MMETSP1174-20130828|15260_1 251 RSYGLIGRNGMGKSTMLRAFAA 272
                  55557899********987654 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 9.6e-12
    TIGR02982 109 lkeklsakeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.va 208
                    e +++++a+ +aeell ++g+ ++l  +p e lsgG + r  +a a+ arP+l+l dePt  l  ++   +   l++        +++v hd   +d v+
  MMETSP1174-20130828|15260_1 346 RLEMIESDTASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDeVC 447
                  4456677889999****************99567*****************************9988777777777777667778889******99887355 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 5.2e-05
    TIGR02982  23 dinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke.lkgaseke 76 
                  + ++ +++   ++l G+ G Gkttl+ l+ g  +  eGe+++  +  +  +++++
  MMETSP1174-20130828|15260_1 578 NAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQArVALVNQHH 632
                  556778888888999****************99*********9765355555544 PP

  == domain 5    score: 33.3 bits;  conditional E-value: 1.1e-10
    TIGR02982 133 erldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild 206
                  +  +  ++ lsgGq+ rva+a    ++P++++ dePt  ld +s  ++ + +    +    +++ v hd+  ++
  MMETSP1174-20130828|15260_1 687 DLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSV----KAFEGAVVCVSHDQFFVN 756
                  555566789********************************99976666555....555678999999987654 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.093       6.5      22      46 ..     248     272 ..     242     301 .. 0.79
   2 !   16.4   0.0   1.6e-05    0.0011     110     199 ..     360     450 ..     348     462 .. 0.80
   3 !   22.6   0.0     2e-07   1.4e-05       4      63 ..     563     625 ..     560     633 .. 0.84
   4 !   35.8   0.0   1.9e-11   1.3e-09     117     210 ..     684     773 ..     681     776 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.093
    TIGR01277  22 eaGervailGesGaGkstllnliaG 46 
                   +G    ++G  G Gkst+l   a 
  MMETSP1174-20130828|15260_1 248 VRGRSYGLIGRNGMGKSTMLRAFAA 272
                  6788899************987664 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.6e-05
    TIGR01277 110 edvarqvGiadylerlp.eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqv 199
                  e++  ++G +d l   p e lsGG r r  la  +     +llldep   l  +    +   +k++    ++ +++v+h+   + ++ + v
  MMETSP1174-20130828|15260_1 360 EELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDV 450
                  56667789888886666488**************999999*********999887777777788888889999999999876655555555 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 2e-07
    TIGR01277   4 ddviyeykhlplefd...lsveaGervailGesGaGkstllnliaGflepasGeikvndkdht 63 
                    v ++y   pl f+   + v a  r+ +lGe G Gk+tl++l+ G l+p++Ge++++ +  +
  MMETSP1174-20130828|15260_1 563 RGVSFNYPGCPLLFSnaeFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARV 625
                  567888888888885333679999********************************9988765 PP

  == domain 4    score: 35.8 bits;  conditional E-value: 1.9e-11
    TIGR01277 117 GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  Gi+d+ +     lsGGqr rvala    +e  il+ldep   ld     e +a ++ +++  + +++ v+h+   + +i ++ +vv+ G +k++
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLD----LESVAALADSVKAFEGAVVCVSHDQFFVNQISNEALVVNGGAVKKV 773
                  777876666679***************************99998....478899999999******************************9987 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0     5e-11   3.5e-09      19     210 ..     242     447 ..     235     457 .. 0.63
   2 ?    4.1   0.0     0.077       5.3      18      47 ..     577     606 ..     559     638 .. 0.75
   3 !   36.7   0.0   8.8e-12   6.1e-10     134     223 ..     685     772 ..     680     788 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5e-11
    TIGR00972  19 dvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkk.ldvvelrkkv..Gmvfqkpnpfpmsiydnvayglrlkg........ikdkkelde..iveesLkkaalwdevkdklkksal.sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeli..qeLkkkytivivthnmqqaarvs 210
                  d    + + +  +liG  G Gkst+lr++     +v +v ++ +v++  ++++ ++ + v++  + v    v +++    m +++n a + +l +        + ++ e+ e  ++ ++ ++  +     d+l++ +l +LsGG + r  +a a+  +P++lLlDePt  L  +a++ +   +  +e+  +  +viv h+  +  +v 
  MMETSP1174-20130828|15260_1 242 DAACTLVRGRSYGLIGRNGMGKSTMLRAFAA--RQVGDVPANVTVHYVSQEVHLTDkTRVMTPGECVvaADVERRLLLEEMEVLENAAEAGELGEesqqrlveVMERLEMIEsdTASRRAEELLINLGFSDELRSRPLeALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELktSEVWADRIVVIVSHDRYFMDEVC 447
                  5556666777789***************974..44556666667777777765443033333333331123556666667999999886654433000011003333322220012222222223334567777776537*******************************999888775544115777889999**99977766665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.077
    TIGR00972  18 kdvnleikknkvtaliGpsGcGkstllrsl 47 
                  ++ ++ +++++ ++l+G  G Gk+tl++ +
  MMETSP1174-20130828|15260_1 577 SNAEFGVTAKSRIVLLGENGNGKTTLVKLM 606
                  46677788888899*************965 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 8.8e-12
    TIGR00972 134 vkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelve 223
                  +kd  +  a +LsGGq+ r+++a     eP++l+lDePt  LD ++++ + + ++  +    +v v h+  + +++s+++ ++  G +  
  MMETSP1174-20130828|15260_1 685 IKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG--AVVCVSHDQFFVNQISNEALVVNGGAVKK 772
                  788888999**************99999*******************999999998865..799**************998888887755 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0006     0.042     455     523 ..     197     268 ..     181     282 .. 0.75
   2 !   11.7   0.0   0.00017     0.012     615     661 ..     379     425 ..     362     443 .. 0.83
   3 !   26.9   0.0   4.3e-09     3e-07     471     549 ..     543     630 ..     507     638 .. 0.74
   4 !   28.6   0.0   1.2e-09   8.6e-08     614     691 ..     694     772 ..     686     784 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0006
    TIGR03796 455 deelee.eeekaaeseek..ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiak 523
                  + e+e  +++ aa++e++     +G++e +  t +     apl+ed   +l  G+   l+G  G Gkst+ +
  MMETSP1174-20130828|15260_1 197 ELEMELeAARVAAARERSihGAYKGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLR 268
                  3333321122222222223478899999999999999999*****************************977 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00017
    TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR 661
                   lsGG r R  +A a+ ++P +L+lDE t  L  ++   + ++l+  
  MMETSP1174-20130828|15260_1 379 ALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTS 425
                  69****************************99988877777777754 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 4.3e-09
    TIGR03796 471 k.........ekLsGk.velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeipre 549
                  +          +L G  v++r+v+f y    + l ++ ++ ++  +r+ l G  G Gk t+ kl+ G  +p++Ge+++  + r ++ ++
  MMETSP1174-20130828|15260_1 543 MelplelksgGELPGFiVQMRGVSFNYPGC-PLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQ 630
                  1244455556889996379********988.8899******************************************999888777665 PP

  == domain 4    score: 28.6 bits;  conditional E-value: 1.2e-09
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiivlerGkvve 691
                  a lsGGqr R+ +A    k+P iL+lDE t  LD e   a+ + ++    +++ v+H    + + ++e +v++ G v +
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAVVCVSHDQFFVNQiSNEALVVNGGAVKK 772
                  679******************************************************8776665256778887777765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012      0.83     494     524 ..     237     267 ..     219     272 .. 0.89
   2 !   13.4   0.0   5.3e-05    0.0037     617     673 ..     379     439 ..     377     469 .. 0.83
   3 !   18.7   0.0   1.3e-06   8.9e-05     479     542 ..     560     621 ..     551     637 .. 0.90
   4 !   39.4   0.0   7.1e-13   4.9e-11     617     703 ..     695     782 ..     690     788 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
    TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStva 524
                   p+l+d + tl  G++  l+G +G GKSt+ 
  MMETSP1174-20130828|15260_1 237 APLLEDAACTLVRGRSYGLIGRNGMGKSTML 267
                  58999************************85 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 5.3e-05
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahr 673
                   lsgG + r  +A A+  +P +L+LDe t  L         + l++s+ +++r v+++ h 
  MMETSP1174-20130828|15260_1 379 ALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSItavmWLARELKTSEVWADRIVVIVSHD 439
                  59******************************9876666678888899**********995 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 1.3e-06
    TIGR00958 479 veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDg 542
                  v+ + VsF YP  p   ++ +  f +++ + + l G +G+GK t + l+     Pt+G+v +  
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGCP--LLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  7899*******999..589*****************************************8865 PP

  == domain 4    score: 39.4 bits;  conditional E-value: 7.1e-13
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmek 703
                   lsgGq+ r+A+A    ++P +L+LDe t  LD e+ ++l +s +a + +v+ + h    v++ +++ lv++ g+v+++  ++  +++
  MMETSP1174-20130828|15260_1 695 ALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAVVCVSHDQFFVNQiSNEALVVNGGAVKKVASFDAYRQR 782
                  69****************************************************99777666537899*********99998876655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.9   1.3e+02     219     267 ..     104     152 ..      95     166 .. 0.81
   2 ?    3.7   0.0     0.093       6.5      20      52 ..     240     272 ..     235     289 .. 0.85
   3 !   26.6   0.0     1e-08   6.9e-07     108     194 ..     352     439 ..     344     446 .. 0.88
   4 !   11.1   0.0    0.0005     0.035      22      66 ..     578     622 ..     570     633 .. 0.87
   5 !   33.1   0.0   1.1e-10   7.4e-09     132     218 ..     693     775 ..     683     785 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 1.9
    TIGR03265 219 PeeiYeqPatkfvadfvGevnllkaeveedsrvrvgevelaveeelaea 267
                  P+ei  q +t+  a+  G+  l+++++++++r+++++++ a++++++++
  MMETSP1174-20130828|15260_1 104 PSEINAQRDTRAAANGAGDEELFTKKMSKEERAAASAAKKALKKNSRKE 152
                  999**********************999999988887777766665554 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.093
    TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                  l+d   ++ +g    l+G  G Gk+t+Lr+ a 
  MMETSP1174-20130828|15260_1 240 LEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA 272
                  667777788888889**************9986 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1e-08
    TIGR03265 108 reevaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                   + +++r eelL  +g+s+  +  P   lsGG + r  La a+  +P+lLLLDeP   L       L +elk+     +   ++v hd
  MMETSP1174-20130828|15260_1 352 SDTASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHD 439
                  5677889999**99****9999999457*********************************99999****999887777777888887 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.0005
    TIGR03265  22 dislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggr 66 
                  + ++ v++   + lLG  G GkttL++++ G  ++++G++ ++ +
  MMETSP1174-20130828|15260_1 578 NAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ 622
                  67899999999********************99*****9987765 PP

  == domain 5    score: 33.1 bits;  conditional E-value: 1.1e-10
    TIGR03265 132 PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgt 218
                   + lsGGq+ rvaLa      P++L+LDeP   LD    + L   +k++        + v hdq    ++++   v+n g +++v++
  MMETSP1174-20130828|15260_1 693 AAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGA----VVCVSHDQFFVNQISNEALVVNGGAVKKVAS 775
                  568*******************************************998765....589***********************99986 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00035     0.024      17      45 ..     241     269 ..     235     277 .. 0.84
   2 !   18.1   0.0     5e-06   0.00035     103     182 ..     357     438 ..     308     457 .. 0.78
   3 !   20.0   0.0   1.3e-06   9.3e-05      22      60 ..     582     620 ..     571     631 .. 0.84
   4 !   24.7   0.0   4.9e-08   3.4e-06     120     204 ..     691     772 ..     683     788 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00035
    TIGR03740  17 nnvslkvkknsvygllGpnGaGkstllkl 45 
                  ++ + ++ + + ygl+G nG Gkst+l+ 
  MMETSP1174-20130828|15260_1 241 EDAACTLVRGRSYGLIGRNGMGKSTMLRA 269
                  556667788899**************986 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5e-06
    TIGR03740 103 srieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqel.reliksfpekGitvilssh 182
                   r ee+l  ++++++ + +  + +s G + r  +a a++ +P+ll+ldePtn l    +  l rel +s       v++ sh
  MMETSP1174-20130828|15260_1 357 RRAEELLINLGFSDElRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLaRELKTSEVWADRIVVIVSH 438
                  56677777777765514567789999****************************9988887746676664444444444444 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.3e-06
    TIGR03740  22 kvkknsvygllGpnGaGkstllklltGllrktsGeilld 60 
                   v  +s   llG nG Gk+tl+kl+ G l++t+Ge+ ++
  MMETSP1174-20130828|15260_1 582 GVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  566677778**************************9886 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 4.9e-08
    TIGR03740 120 kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklky 204
                    a  +s G + r+ +a   +++P++l+ldePtn ld   +  l + +k+f+    +v+  sh    v++++++  +++ G +k 
  MMETSP1174-20130828|15260_1 691 VPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG---AVVCVSHDQFFVNQISNEALVVNGGAVKK 772
                  567788999999********************************999999975...45556787888888888888888887765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0098      0.68      20      49 ..     242     271 ..     235     299 .. 0.81
   2 !   30.6   0.0     7e-10   4.9e-08     104     206 ..     349     454 ..     337     529 .. 0.80
   3 !   11.8   0.0   0.00038     0.027      29      63 ..     588     621 ..     575     642 .. 0.83
   4 !   25.5   0.0   2.5e-08   1.7e-06     131     217 ..     693     777 ..     680     793 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0098
    TIGR03522  20 evsfeaekGeivGflGPnGaGkstlmkilt 49 
                  + + +  +G+  G++G nG Gkst+++  +
  MMETSP1174-20130828|15260_1 242 DAACTLVRGRSYGLIGRNGMGKSTMLRAFA 271
                  5566777999***************98654 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 7e-10
    TIGR03522 104 klkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.rev.ikeiakdktvilsthimqevealcdrviiin 206
                   +++ +  +r eel+ + G++ e   + ++als G+r r  la+a+   P++l+ldePt  l    ++ + re+   e+  d+ v++ +h    ++ +c +v+ i 
  MMETSP1174-20130828|15260_1 349 MIESDTASRRAEELLINLGFSDELRsRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLaRELkTSEVWADRIVVIVSHDRYFMDEVCTDVLHIS 454
                  5666777889999999****99965167************************************99998725552347899*********99999999**999886 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00038
    TIGR03522  29 eivGflGPnGaGkstlmkiltgylkadsGsvavag 63 
                  + + +lG nG Gk+tl+k++ g l+++ G v ++ 
  MMETSP1174-20130828|15260_1 588 R-IVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  4.458*************************99865 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 2.5e-08
    TIGR03522 131 igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkle 217
                   +als G r rv la+    +P++l+ldePt  ld + + ++ + +k    + +v+  +h    v+ + ++ +++n G +    + +
  MMETSP1174-20130828|15260_1 693 AAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF--EGAVVCVSHDQFFVNQISNEALVVNGGAVKKVASFD 777
                  579***************************************9999976..566788889888999999999999999775444444 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-08   9.5e-07     466     650 ..     233     438 ..     201     454 .. 0.71
   2 !   10.9   0.0    0.0003     0.021     456     517 ..     560     620 ..     547     632 .. 0.88
   3 !   36.2   0.0   6.9e-12   4.8e-10     592     674 ..     694     775 ..     684     785 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.4e-08
    TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkstltkll...qrlyvPekGrvlvdgvdlaladPawlrrqv.gvv...lqenvlf.srsirdnialakP..aiseekviaa.akl.......aG..ahdfiselkqGyetevgekG.aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlr..eickgrtviiiah 650
                      +++l++ +  +  G++ G++G+ G Gkst+ + +   q   vP +  v    +++ l+d + +      vv   +   +l+ +  + +n a a    + s+++++++  +l       a   a++++  ++ G+  e+  +   alsGG r r  la a+ a P +l+lde t  l   +   + r+l+  e+ ++r v+i++h
  MMETSP1174-20130828|15260_1 233 PGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFaarQVGDVPANVTVHYVSQEVHLTDKTRVMTPGeCVVaadVERRLLLeEMEVLENAAEAGElgEESQQRLVEVmERLemiesdtASrrAEELL--INLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKtsEVWADRIVVIVSH 438
                  55567889999999999****************9997633244578999999999999*****99876543034411123345651567999998764311233333333212331111111221133333..356******9997368*****************************************99644799*********9 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0003
    TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvd 517
                  ++++ + f y +  p ++sn ++ ++a   i + G+ G Gk+tl kl+    +P +G+v + 
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNY-PGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  5788899999.7899*******************************************9875 PP

  == domain 3    score: 36.2 bits;  conditional E-value: 6.9e-12
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkivesGk 674
                  aalsGGqr r+ala    ++P+il+lde t  ld es a++ + +++   + +v++++h    v + +++ lv++ G +    +
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF--EGAVVCVSHDQFFVNQiSNEALVVNGGAVKKVAS 775
                  79****************************************999976..4579999999888877246678888887766555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00017     0.012      19      50 ..     239     270 ..     229     300 .. 0.83
   2 !   18.5   0.1   2.5e-06   0.00017     132     193 ..     376     438 ..     357     465 .. 0.75
   3 !   43.3   0.0   7.1e-14     5e-12       6     169 ..     561     729 ..     557     742 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00017
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlv 50 
                  +++d + t+ +g  +gl+g ng gkst+ r  
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAF 270
                  6789999********************99865 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.5e-06
    TIGR01288 132 rvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrs.llargktilltth 193
                  ++  lsgg + r  la+a+   p+ll+ldept  l   a   +   l++  +   + +++ +h
  MMETSP1174-20130828|15260_1 376 PLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTsEVWADRIVVIVSH 438
                  5678******************************99888665555555403444444455555 PP

  == domain 3    score: 43.3 bits;  conditional E-value: 7.1e-14
    TIGR01288   6 dlvgvsksy.gdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlara.kigv.vpqfdnldreftvrenllvfgryfglstreieevipslle..farleskadvrvadlsggmkrrltlaralindpqllildepttgldph 169
                  ++ gvs  y g  ++  +  f ++a   + llg ng gk+t+ +l+lg  +p eg++ +  +   a +    a +i + ++ ++ ++ref +   +  +    +l+       +        + ++   +v+ a lsgg + r++la+   ++p++l+ldept  ld  
  MMETSP1174-20130828|15260_1 561 QMRGVSFNYpGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVNQHHAdQIDLeLTPLEYMQREFPAAVGVTAYEHLQRLRGHLAGCGVTGGGGpvGSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLE 729
                  56677777745567888999*************************************998776666555443314554345688999999999999999999999998887777655431145678889*************************************965 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   2.4e-11   1.7e-09       4     197 ..     242     451 ..     239     457 .. 0.79
   2 ?    4.8   0.0      0.05       3.5       5      50 ..     579     620 ..     575     641 .. 0.76
   3 !   31.3   0.0   3.9e-10   2.7e-08     124     204 ..     694     770 ..     684     790 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.4e-11
    TIGR02770   4 dvnlslkrgkvlalvGesGsGkslt..alailgl..ldkel..tktsGeilldgkelaal...........alrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                  d   +l rg+  +l+G  G Gks+   a a+ ++   ++++    +s e+ l +k    +           +    e   +l n  +a +     +++l+e ++ le ++ ++a  ++ e l + g +  +e+ +     lsGG   R m+a a+ +++ ll+ DePt  l +++ + + ++l++ +   +  +++++hD   + e+  +v+
  MMETSP1174-20130828|15260_1 242 DAACTLVRGRSYGLIGRNGMGKSTMlrAFAARQVgdVPANVtvHYVSQEVHLTDKTRVMTpgecvvaadveRRLLLEEMEVLENAAEAGELGEESQQRLVEVMERLEMIEsDTASRRAEELLINLGFS--DELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVL 451
                  56677889***************862244444442134444114578888888877666578888888654222334567999999999999999*************99778888888888777777..5555555556*********************************************9999***********988888877775 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.05
    TIGR02770   5 vnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilld 50 
                   ++ +     + l+Ge G Gk++  + +lg l      t+Ge++++
  MMETSP1174-20130828|15260_1 579 AEFGVTAKSRIVLLGENGNGKTTLVKLMLGELT----PTEGEVRIH 620
                  567777777889**********99888888666....566666665 PP

  == domain 3    score: 31.3 bits;  conditional E-value: 3.9e-10
    TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                    lsGG   Rv +a  +  e+ +l+ DePt +lD+ + a     l + ++ ++ +++ ++hD   v ++ +e +v++ G +
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAA----LADSVKAFEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  579***********99******************988665....5556678899*********************998876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.027       1.9     301     384 ..     181     268 ..     168     297 .. 0.76
   2 !   18.2   0.0   2.5e-06   0.00018     449     543 ..     353     440 ..     339     472 .. 0.74
   3 !   22.7   0.0     1e-07   7.2e-06     337     401 ..     559     621 ..     526     638 .. 0.81
   4 !   25.8   0.0   1.2e-08   8.5e-07     475     519 ..     694     738 ..     686     773 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.027
    TIGR02204 301 lqraaGaaerliel.lkaksdik....aPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstlle 384
                  l++ a aaer+    ++ + +++    a a+++++    +g++e  + ++a P     + l++   t+  G+   l+G  G Gkst+l+
  MMETSP1174-20130828|15260_1 181 LSKKASAAERVERQkAELEMELEaarvAAARERSIHGAYKGALEASSFTLANPGGG-APLLEDAACTLVRGRSYGLIGRNGMGKSTMLR 268
                  66777788887432123333333111134556677777888888888888999876.899**************************987 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.5e-06
    TIGR02204 449 aakaaeadefisklpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadr 543
                   + + +a+e++ +l  G++ +l  r +  LsGG + r  +a ai++   +LLLde t+ L   +   + + l      +t  v a r++ + + dr
  MMETSP1174-20130828|15260_1 353 DTASRRAEELLINL--GFSDELRSRPLeALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLAREL------KTSEVWADRIVVIVSHDR 440
                  45556677777655..9999999998736*****************************99765544444443......555555555555555555 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 1e-07
    TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldG 401
                   +++  v+f+yP  p  + +++ ++ v +  ++ l G  G Gk+tl++l+l    P++G++++  
  MMETSP1174-20130828|15260_1 559 IVQMRGVSFNYPGCP--LLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  579999*********..8899999*************************************9975 PP

  == domain 4    score: 25.8 bits;  conditional E-value: 1.2e-08
    TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqal 519
                    LsGGq+ r+a+a   +k+  iL+Lde t+ Ld es  ++  ++
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSV 738
                  68**********************************988776665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.1e-10   7.6e-09      14     218 ..     238     454 ..     235     473 .. 0.79
   2 !   11.7   0.0   0.00038     0.026      26      73 ..     586     631 ..     575     638 .. 0.78
   3 !   23.4   0.0     1e-07   7.3e-06     145     223 ..     696     770 ..     689     786 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.1e-10
    TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyev.tsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavr..kargeeeldllefekllkeklellelde.........elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvl 218
                  ++L++   ++ +G  + ++G+nG Gkst+ ++ a ++   v ++ ++++  q++   +       G  +     e    ++  e l +a++a +  ++ +++ ++++e  +++++ +++ + +e         el +R l e  sGG + r+ +    + +P+l +LDe    l + a+  +a+++++ +   ++ ++i++h + +++++  dv+h+ 
  MMETSP1174-20130828|15260_1 238 PLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQVGDVpANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVLENAAEAGElgEESQQRLVEVMERLEMIESDTASRRAEEllinlgfsdELRSRPL-EALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWaDRIVVIVSHDRYFMDEVCTDVLHIS 454
                  5788888999999************************9999345688898988877777666777877666666666678999999999998762233444446666666666666655555444444444448888888.579******************************************999876699999*****************996 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00038
    TIGR01978  26 GevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllelevee 73 
                      +++G nG+Gk tL+k + g+   + t+Ge++++ q  ++l  + 
  MMETSP1174-20130828|15260_1 586 KSRIVLLGENGNGKTTLVKLMLGEL--TPTEGEVRIHPQARVALVNQH 631
                  555789****************975..568999998888777776655 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1e-07
    TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGri 223
                   sGG + r  +  +++ eP++ +LDe    lD++++ ++a+ v+ +   e a++ ++h + ++++i+ + + v+  G +
  MMETSP1174-20130828|15260_1 696 LSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF---EGAVVCVSHDQFFVNQISNEAL-VVNGGAV 770
                  7*********************************999999888777...679**************98765.4455544 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0052      0.36      21      56 ..     237     272 ..     228     317 .. 0.90
   2 !   26.9   0.0   7.3e-09   5.1e-07     114     200 ..     354     440 ..     340     488 .. 0.87
   3 ?    6.4   0.0     0.012      0.86      32      67 ..     584     619 ..     560     633 .. 0.83
   4 !   30.2   0.0   7.2e-10     5e-08     134     221 ..     691     773 ..     681     786 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0052
    TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaG 56 
                    +l+d + ++  G    l+G+ G Gk+t+lra a 
  MMETSP1174-20130828|15260_1 237 APLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA 272
                  5678999999999*******************9885 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 7.3e-09
    TIGR03258 114 liaervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                    ++r  + l  +++sd     p + lsGG + r  la a+  rpd+llldep   l       +  elk+  +   +  v++v+hdr
  MMETSP1174-20130828|15260_1 354 TASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKT-SEVWADRIVVIVSHDR 440
                  44567777788899999998888357********************************9999999****97.56778899999****8 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.012
    TIGR03258  32 eaGellallGksGsGkttllravaGfvkadGGrllv 67 
                   a   + llG+ G Gkttl++++ G + +  G + +
  MMETSP1174-20130828|15260_1 584 TAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRI 619
                  55666889*****************99999998877 PP

  == domain 4    score: 30.2 bits;  conditional E-value: 7.2e-10
    TIGR03258 134 rlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslial 221
                     a lsGGq+ rvala     +p++l+ldep   ld +  a++ + +ka+     e +v++v+hd+     +++ +l+++ G + + 
  MMETSP1174-20130828|15260_1 691 VPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF-----EGAVVCVSHDQFFVNQISNEALVVNGGAVKKV 773
                  44578************9999*************************99997.....5689*******999999999999999988665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.7        48       1      18 [.     255     272 ..     255     290 .. 0.89
   2 !   27.4   0.0   5.2e-09   3.6e-07      72     161 ..     350     440 ..     340     528 .. 0.77
   3 !    8.6   0.0    0.0027      0.19       1      30 [.     591     620 ..     591     635 .. 0.86
   4 !   31.1   0.0   3.7e-10   2.6e-08      99     184 ..     694     775 ..     685     782 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.7
    TIGR01187   1 lLGpsGsGkttlLrllaG 18 
                  l+G  G Gk+t+Lr +a 
  MMETSP1174-20130828|15260_1 255 LIGRNGMGKSTMLRAFAA 272
                  6899**********9885 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 5.2e-09
    TIGR01187  72 vpkaeikervkeaLelvqleefakrkp.sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                  ++ ++ + r +e+L    +++  +++p + lsGG r r  la a+  +P++LLlDep   L       +  elk+ +      vv+v hD+
  MMETSP1174-20130828|15260_1 350 IESDTASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDR 440
                  556667778888887777765555555167********************************99999999****99999999999999997 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0027
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilld 30 
                  lLG  G Gkttl++l+ G  ++ +G++ + 
  MMETSP1174-20130828|15260_1 591 LLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  89***********************99875 PP

  == domain 4    score: 31.1 bits;  conditional E-value: 3.7e-10
    TIGR01187  99 sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqige 184
                    lsGGqr rvala    k+P+iL+lDep   LD +    +   +ka++     +vv v hDq     +s+   v++ G ++++++
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG----AVVCVSHDQFFVNQISNEALVVNGGAVKKVAS 775
                  679***********99999****************999999999999875....5799*****99999999999999999888765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   1.7e-10   1.2e-08      13     192 ..     244     445 ..     233     449 .. 0.69
   2 !   13.9   0.0   6.7e-05    0.0046      10      54 ..     577     621 ..     570     636 .. 0.86
   3 !   18.3   0.0   3.2e-06   0.00022     128     211 ..     694     773 ..     683     780 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.7e-10
    TIGR01186  13 dleieeGeiiviiGlsGsGkstlvrll.nrlie..PtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnis...............lglellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd...lde 192
                     +  G  + +iG  G Gkst++r +  r +   P++  ++   +++   +++++       +a  + +  l+  m +l+n +               +  +l  i+ +   ++a e+l  +++ +e + r  + lsGG + r  la a+ a Pdlll+de+   l       l  el+  +   ++ +v ++hd   +de
  MMETSP1174-20130828|15260_1 244 ACTLVRGRSYGLIGRNGMGKSTMLRAFaARQVGdvPANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVLENAAeagelgeesqqrlveVMERLEMIESDTASRRAEELLINLGFsDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDryfMDE 445
                  5556666666677777777777777542466642244444444455566666666655555566666666666666666666541111111111110003344666777788899**********77888888899********************************99999**********************9555555 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 6.7e-05
    TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidG 54 
                   ++++ ++    iv++G  G Gk+tlv+l+   + Pt+G++ i  
  MMETSP1174-20130828|15260_1 577 SNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  578888888999******************999*******99865 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 3.2e-06
    TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqv 211
                    lsGG++ rv la     eP +l++de+   ld      l d ++      + ++v ++hd     ++++   +++ G + +v
  MMETSP1174-20130828|15260_1 694 AALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVK----AFEGAVVCVSHDQFFVNQISNEALVVNGGAVKKV 773
                  579*******************************877777777665....4567889999998888888888777777777666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0     5e-11   3.5e-09      17     210 ..     240     449 ..     232     471 .. 0.71
   2 !    8.4   0.0     0.002      0.14       3      49 ..     561     608 ..     559     628 .. 0.75
   3 !   24.6   0.0   2.5e-08   1.7e-06     399     492 ..     691     781 ..     686     787 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 5e-11
    TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGe..ilfegeelkassirdterkGiviihqel...tlvkelsvlenif....lGneitlk.......GglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgv....acvyishkleevkavsdt 210
                  l++ + +l  G   +l G nG Gkst+++ +++    G+   +  +++  +e++ ++       G +++  ++    l++e+ vlen      lG+e  ++         +++ d+  +ra+ell +l  +++  +rp+  l +G +    +a a+  +  ll+ldep+  l+      ++ + r+lk+ +v      v +sh    ++ v+  
  MMETSP1174-20130828|15260_1 240 LEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA-RQVGDVPANvtVHYVSQEVHLTDKTRVMTPGECVVAADVerrLLLEEMEVLENAAeageLGEESQQRlvevmerLEMIESDTASRRAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSI---TAVMWLARELKTSEVwadrIVVIVSHDRYFMDEVCTD 449
                  56667788889999***************9987.5577765541168888988877666655556555544332225889*******97333356553332100000023344555568**************************************************99975...4556667888877773222346667766555555555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.002
    TIGR02633   3 emkgivkkfggvkal.dnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  +m+g+  ++ g   l  n ++ + a   + l GenG Gk+tl+k++ g
  MMETSP1174-20130828|15260_1 561 QMRGVSFNYPGCPLLfSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLG 608
                  566666666555443267788889999999**************9765 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 2.5e-08
    TIGR02633 399 lpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklkadlvndeltq 492
                  +p a+lsGG++ +  la +   +p++l+ldept  +d+ + + +   ++++  eG a++ vs +   v  +s+  lv++ G +k     d+  q
  MMETSP1174-20130828|15260_1 691 VPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF--EG-AVVCVSHDQFFVNQISNEALVVNGGAVKKVASFDAYRQ 781
                  6889**********************************9887766665543..45.8999*********************9987555555555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.04       2.8      16      46 ..     240     270 ..     235     304 .. 0.88
   2 !   27.0   0.0   7.3e-09   5.1e-07     117     219 ..     349     452 ..     335     468 .. 0.86
   3 !    7.7   0.0    0.0055      0.38      17      61 ..     577     621 ..     564     637 .. 0.86
   4 !   25.4   0.0   2.2e-08   1.5e-06     137     224 ..     686     769 ..     681     785 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.04
    TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilril 46 
                  l+++  ++ +G+   liG  G Gkst+lr +
  MMETSP1174-20130828|15260_1 240 LEDAACTLVRGRSYGLIGRNGMGKSTMLRAF 270
                  67778888999******************76 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 7.3e-09
    TIGR03005 117 GvaraeaekravelldmvGladkadalpa.qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlf 219
                   ++   a +ra ell  +G++d   + p   lsGG + r  +a a+  rp +ll+de+t  l    v  +   l+      d  +++v+h+  f  e++  vl 
  MMETSP1174-20130828|15260_1 349 MIESDTASRRAEELLINLGFSDELRSRPLeALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVLH 452
                  56677899********************736*******************************98777777777776667789999*********9999988875 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0055
    TIGR03005  17 dglelevaaGekvaliGpsGsGkstilrilmtletideGsikveg 61 
                   ++e+ v+a  ++ l+G  G Gk+t++++++   t  eG+++++ 
  MMETSP1174-20130828|15260_1 577 SNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  567899999*******************99988888999999865 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 2.2e-08
    TIGR03005 137 adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGk 224
                   d ++   a lsGGq+ rva+a     +p++l++de+t  ld e v  + + ++      + +++ v+h+  f +++++  l  + G 
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKA----FEGAVVCVSHDQFFVNQISNEALVVNGGA 769
                  4545555578************99999***************9988776665554....45567788888888888888777776665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05     0.001     328     502 ..     219     411 ..     180     471 .. 0.69
   2 !   17.1   0.0   4.6e-06   0.00032     332     392 ..     560     619 ..     548     630 .. 0.91
   3 !   29.1   0.0   1.1e-09   7.4e-08     468     513 ..     693     738 ..     681     768 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-05
    TIGR02203 328 vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvn.llpRFyepdsGeillDgvdladlkLasLRrqv....alvsqdv....vLFddtiaenvaYg.eleevdeaeveealaaayl..kdlvdk......lpeGldtevGeng.skLsGGqRqRlaiaRallkdaPiLiLDeatsaLD 502
                   +G +e  + t   pg +++ l++   ++  G+   l+Gr G Gkst+++ + +R +     ++ +  v  ++++L++  r +     +v+ dv    +L +  + en a + el e +++++ e+++   +   d   +      ++ G+  e+ ++    LsGG R R  +a a++    +L+LDe t  L 
  MMETSP1174-20130828|15260_1 219 YKGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRaFAARQVGDVPANVTVHYVS-QEVHLTDKTRVMtpgeCVVAADVerrlLLEEMEVLENAAEAgELGEESQQRLVEVMERLEMieSDTASRraeellINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLS 411
                  5799999999************************************976514456666666666665444.5666666554442222355555533316667789999985414444444444444333222012222221111113567777776665257****************************9885 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.6e-06
    TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeill 392
                  v++r v+f+ypg     +++ ++ v+a  ++ l G  G Gk+tlv+l+   + p++Ge+ +
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGCPL-LFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRI 619
                  789********9865.6799****************************9999999999865 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 1.1e-09
    TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaL 513
                  ++ LsGGqR R+a+a   +k+  iL+LDe t  LD es  ++ +++
  MMETSP1174-20130828|15260_1 693 AAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSV 738
                  789***********************************87776665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00013    0.0087     483     645 ..     233     413 ..     187     446 .. 0.60
   2 !   25.6   0.0   1.3e-08   8.7e-07     474     536 ..     560     622 ..     548     640 .. 0.88
   3 !   22.6   0.0   1.1e-07   7.4e-06     609     692 ..     693     776 ..     682     783 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00013
    TIGR01193 483 yGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngk......slkdidkhelrq.....linylPqePfifsGsilenll.lgakenvsqeeikkav...eiaeikddiek.....lplGyqtelsee.assisgGqkqrlalarallsdskvlildestsnldll 645
                   G g+++led   ++ + ++  l+G  G Gkst+ +    f   + G++  n +      +++  dk+++       + + + +  ++ +  +len    g   + sq+++ +++   e++e ++  ++     ++lG++ el +    ++sgG + r  la a+++  ++l+lde t +l + 
  MMETSP1174-20130828|15260_1 233 PGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLR---AFAARQVGDVPANVTvhyvsqEVHLTDKTRVMTpgecvVAADVERRLLLEEMEVLENAAeAGELGEESQQRLVEVMerlEMIESDTASRRaeellINLGFSDELRSRpLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSIT 413
                  467788888888888888888888888888888755...45555666655543300000033333333332211110111222222333344555543212222334444444441004444443322222233689*****96651578*****************************99765 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.3e-08
    TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngk 536
                  +++  vs++y  +  ++++ ++ ++++++i+l+G  G Gk+tl+kl+++   +++Ge+ + ++
  MMETSP1174-20130828|15260_1 560 VQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQ 622
                  78999*****************************************************99865 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 1.1e-07
    TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGkiieqGsh 692
                  a+++sgGq+ r+ala   + + ++l+lde t nldl     + + +  + + +++ v+h ++ v + s++ +v++ G +    s+
  MMETSP1174-20130828|15260_1 693 AAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAF-EGAVVCVSHdQFFVNQISNEALVVNGGAVKKVASF 776
                  689********************************98777766665555.88999999945788899999999999988666655 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.1e-10   2.9e-08      21     216 ..     240     455 ..     237     485 .. 0.79
   2 ?    2.5   0.0      0.19        13      35      74 ..     590     629 ..     576     636 .. 0.80
   3 !   23.9   0.0   5.5e-08   3.9e-06     129     219 ..     684     770 ..     681     788 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 4.1e-10
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvn...llekptsgavivdgkdlttlsnaelvk.arrqigmifqhfnllssrtvfgnvalplelentpkeki...............krkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidk 216
                  l++ +  + +g+ +g+ig  g gkst++r      + + p++ +v    +++   +++ +++     +    +   ll    v++n a   el +++++++                r+ +ell  +g+sd   s p   lsgg + r  +a a+ + p +ll de t  l  ++   +   lk  +   +  +++++h+   + ++c  v  i++
  MMETSP1174-20130828|15260_1 240 LEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAarqVGDVPANVTVHYVSQEVHLTDKTRVMTpGECVVAADVERRLLLEEMEVLENAAEAGELGEESQQRLvevmerlemiesdtaSRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHDRYFMDEVCTDVLHISG 455
                  5677777889*******************87522256789988887777776655555544414555666677778889999999999999998888775322222222222222257899***************9447********************************99999999999999999999999*************99988875 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.19
    TIGR02314  35 gvigasgagkstlircvnllekptsgavivdgkdlttlsn 74 
                   ++g  g gk+tl++ +    +pt+g+v +  +    l n
  MMETSP1174-20130828|15260_1 590 VLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVALVN 629
                  57899**********9877779******998877766665 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 5.5e-08
    TIGR02314 129 glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219
                  g+ d ++   + lsggq+ rva+a     ep++l+ de t  ld  +  ++ + +    + ++ +++ ++h+   v +i +e  v+++g +
  MMETSP1174-20130828|15260_1 684 GIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSV----KAFEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  666777777899********************************87655544444....4566678999**********999998888764 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   5.4e-08   3.8e-06       5     174 ..     244     439 ..     240     451 .. 0.67
   2 !   10.5   0.0    0.0011     0.074       7      46 ..     582     621 ..     576     630 .. 0.86
   3 !   17.4   0.0   8.1e-06   0.00056     105     156 ..     686     737 ..     682     782 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.4e-08
    TIGR01184   5 dleikkgefislighsgcgkstllnliagl...ekptsgavilegkeitep......gpdrmvvfqn...ysllpwltvrenialavd....avlrdlskserreiveehie.......lvglreaad...krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                    ++ +g    lig  g gkst+l   a     + p++ +v+   +e++         p   vv  +     ll  + v en a a +    + +r ++  er e++e++ +       l++l  + +   +  e lsgg + r  +a a+  rp+lllldep   l   +   l  +l      a+  v++v+hd
  MMETSP1174-20130828|15260_1 244 ACTLVRGRSYGLIGRNGMGKSTMLRAFAARqvgDVPANVTVHYVSQEVHLTdktrvmTPGECVVAADverRLLLEEMEVLENAAEAGElgeeSQQRLVEVMERLEMIESDTAsrraeelLINLGFSDElrsRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHD 439
                  5667778888999999999999999988752225788888888888775441111113444566544111568899999999987765111133344455788888876543233334466776544411156689****************************99988777778777765555566677888888 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0011
    TIGR01184   7 eikkgefislighsgcgkstllnliaglekptsgavileg 46 
                   +     i l+g  g gk+tl+ l+ g   pt+g v+++ 
  MMETSP1174-20130828|15260_1 582 GVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHP 621
                  566666799***************************9875 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.1e-06
    TIGR01184 105 reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqek 156
                  ++ ++   + lsgg + rva+a      p++l+ldep   ld  +   l + 
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADS 737
                  5566677889************999999*************98776666655 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   5.3e-09   3.7e-07      24     197 ..     247     438 ..     241     450 .. 0.69
   2 !   12.8   0.0    0.0002     0.014      29      64 ..     588     623 ..     559     640 .. 0.82
   3 !   11.7   0.0   0.00043      0.03     137     216 ..     691     770 ..     685     776 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.3e-09
    TIGR02323  24 lypGevlgivGesGsGkstllkalaarll...adaGevtyesrsr.el.........ellalseaerrlllrtewGlvhqnpr.GlrmevsaG..anigerllavgarhyGkiraaakwlekveidaarikp.aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelgla...viivth 197
                  l  G+  g++G  G Gkst+l a+aar +   + + +v+y s++   +         e +  ++ errlll  e  ++++ +  G   e s     ++ erl ++ +     +ra++  ++    d+ r +p +a+sGG + r  +a ++ +rp l+++ ept  l s+ a + l r+l +    a   v+iv+h
  MMETSP1174-20130828|15260_1 247 LVRGRSYGLIGRNGMGKSTMLRAFAARQVgdvPANVTVHYVSQEVhLTdktrvmtpgECVVAADVERRLLL-EEMEVLENAAEaGELGEESQQrlVEVMERLEMIES-DTASRRAEELLINLGFSDELRSRPlEALSGGWRVRTMLAAAIFARPDLLLLdEPTNHL-SITAVMWLARELKTSEVWAdriVVIVSH 438
                  5678999*******************976222566788887665321111111112244556677888555.56777777766564444444312678899988844.4555555555555555677799985689**********************99999876.9999999***998764444221455555 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.0002
    TIGR02323  29 vlgivGesGsGkstllkalaarlladaGevtyesrs 64 
                   + ++Ge G Gk+tl+k + ++l++++Gev+ + + 
  MMETSP1174-20130828|15260_1 588 RIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQA 623
                  56789*************************987655 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00043
    TIGR02323 137 ikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrv 216
                  +  aa+sGG + r+ +a +   +p+++++ ept  l   sv a    l   v+ ++ av+ v+h    +  +++  lv++ G v
  MMETSP1174-20130828|15260_1 691 VPAAALSGGQRSRVALAAVSFKEPHILVLdEPTNNLdlESVAA----LADSVKAFEGAVVCVSHdQFFVNQISNEALVVNGGAV 770
                  456789******************987777****997456655....5678999999*******86677888888898887766 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-05    0.0019    1215    1266 ..     220     271 ..     188     296 .. 0.86
   2 !   12.0   0.0   7.8e-05    0.0054     549     583 ..     380     414 ..     375     463 .. 0.68
   3 !   11.0   0.0   0.00016     0.011     446    1278 ..     580     620 ..     557     637 .. 0.59
   4 !   11.3   0.0   0.00013    0.0088     548     582 ..     695     729 ..     684     742 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-05
    TIGR01271 1215 ggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsall 1266
                   +g ++  ++t     +g  +l+d + ++  g++ gl+gr g gkst+l a+ 
  MMETSP1174-20130828|15260_1  220 KGALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFA 271 
                   577777788888889999*******************************985 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7.8e-05
    TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvt 583
                  lsgg r r  la a++   dl lld p ++l +++
  MMETSP1174-20130828|15260_1 380 LSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITA 414
                  67777777777777777777777777777776654 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00016
    TIGR01271  446 slklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfsskllgleafdslsaerrnsiltetlrrvsvesdaalvsysetkkqsfkqpppefaekrksslilnpiasarkfslvqkapskaqateiedavselserklslvpedeqgeeslprsnvfksglqlqarrrqsvlallthssrgenkreklrasvrkvslisqanelaseldiysrrlskdssleiseeineedlkecfadeeesvnatttwntylryittnrnlvfvlililviflaevaaslvglflisdlasatnsdkqdsanasspdsskaviitstsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqid 1278
                   ++ +     + + g  g gk++l+ ++lgel p+eg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        e++i 
  MMETSP1174-20130828|15260_1  580 EFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVRIH 620 
                   333333333444555555555555555555555555........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................55443 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00013
    TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvv 582
                  +lsggqr+r++la   +k+  + +ld p + ld+ 
  MMETSP1174-20130828|15260_1 695 ALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLE 729
                  79******************************985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   3.2e-08   2.2e-06      40     198 ..     239     411 ..     223     438 .. 0.76
   2 ?    1.8   0.0      0.21        15      55      72 ..     590     607 ..     583     663 .. 0.80
   3 !   27.3   0.0   4.1e-09   2.9e-07     166     203 ..     695     732 ..     688     750 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.2e-08
    TIGR00955  40 llknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea....kemraisayvq...qddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtri..gvpgrvk.....glSgGerkRlalaselltdPilLfcDEPTsGLD 198
                  ll++ + ++  G    ++G  G GK+T+l a a r+  ++  + +v    ++v      + m+   + v    +  l+++ + v e+     +l  + +    e +er e + +++  r +++ +i  g  ++++     +lSgG r R  la  +   P lL++DEPT  L 
  MMETSP1174-20130828|15260_1 239 LLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQVGDVPANVTVHYVSQEVHLtdktRVMTPGECVVAadvERRLLLEEMEVLENAAEAGELGEESQQRLVEVMERLEMIESDTASRRAEELLInlGFSDELRsrpleALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLS 411
                  66677777777888889***********************99877555455444310013344445566422255799999999999999988887777777799999999999999999999998334556554222237****************************9884 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.21
    TIGR00955  55 AvlGsSGaGKtTLlnala 72 
                   +lG  G GKtTL++ + 
  MMETSP1174-20130828|15260_1 590 VLLGENGNGKTTLVKLML 607
                  689**********98764 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 4.1e-09
    TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLDsfsaa 203
                  +lSgG+r R+ala    ++P++L++DEPT  LD  s a
  MMETSP1174-20130828|15260_1 695 ALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVA 732
                  79******************************966554 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0034      0.24     470     512 ..     378     420 ..     345     473 .. 0.78
   2 !   17.4   0.0   4.2e-06   0.00029     321     395 ..     545     620 ..     516     635 .. 0.84
   3 !   24.1   0.0   3.8e-08   2.7e-06     471     529 ..     695     751 ..     688     790 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0034
    TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkd 512
                  + lsgg r r  +a ai+    +l+lde t  l + + + +  
  MMETSP1174-20130828|15260_1 378 EALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLAR 420
                  569****************************999876554443 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.2e-06
    TIGR01192 321 epadarelknvkg.avefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilid 395
                   p ++++  ++ g  v++r +sf+++ +     +  f + a   + ++g  g gkttl+ l+     p++g++ i 
  MMETSP1174-20130828|15260_1 545 LPLELKSGGELPGfIVQMRGVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIH 620
                  45555555566662479*******************************************************9986 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 3.8e-08
    TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahr 529
                   lsgg+r r+a+a   +k+  ilvlde t  ld+e+ a + d++ a++   +   ++h 
  MMETSP1174-20130828|15260_1 695 ALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEG--AVVCVSHD 751
                  79************************************99999998754..34445554 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.5       7.3     5e+02     135     166 ..      50      80 ..      18      97 .. 0.52
   2 !   21.6   1.1   2.7e-07   1.9e-05      41     224 ..     241     439 ..     232     448 .. 0.76
   3 ?    4.7   0.0     0.038       2.6      43      90 ..     579     626 ..     568     646 .. 0.76
   4 !   17.3   0.0   5.5e-06   0.00038     155     243 ..     686     770 ..     683     777 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7.3
    TIGR03415 135 GvakaerrkrveeqlelvglaeWadkkvgels 166
                   +ak+e  k+++++ + +  ++ ++k+++ ls
  MMETSP1174-20130828|15260_1  50 SMAKKEAAKKAQKEAKALK-EKKREKQADLLS 80 
                  3444555444444443322.222334444444 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 2.7e-07
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvg..............l...aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                  +da+ ++ +G    l+G  G Gks++lra     +v     +v+ +  +++v  +d++ + +     v+    +  ll  + v en a   el G   ++r  +v e+le+++              l   +e + +  + lsGG + r  la a+    d+ll+deP   l       l  el +      + +v vshd
  MMETSP1174-20130828|15260_1 241 EDAACTLVRGRSYGLIGRNGMGKSTMLRAFAAR-QVGDVPANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEVLENAAEAGEL-GEESQQRLVEVMERLEMIEsdtasrraeellinLgfsDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSHD 439
                  567778888999999*************98654.44444445555555555666677777777888899999999999999999999988888.666677777788888776511111111111111322235566667789*******************************9999*********999***********9 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.038
    TIGR03415  43 asldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkev 90 
                  a + v+    +vl+G  G Gk++l++ + g  + + G+v+++ + +  
  MMETSP1174-20130828|15260_1 579 AEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQARVA 626
                  55666666678***************9999888899***998776543 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 5.5e-06
    TIGR03415 155 aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGri 243
                  ++ ++  +  lsGG + rv la     e  il++deP   ld    a l d + +    ++ ++v vshd     ++ n+  +++gG +
  MMETSP1174-20130828|15260_1 686 KDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKA----FEGAVVCVSHDQFFVNQISNEALVVNGGAV 770
                  6667777889************99999***************9999999999855....56789******8888888888888888765 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   9.2e-07   6.4e-05    1917    2141 ..     203     451 ..     190     467 .. 0.65
   2 !   18.6   0.0   5.1e-07   3.5e-05     882    1105 ..     506     739 ..     499     767 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.2e-07
    TIGR01257 1917 edddvaeerqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdt.tvtsgdatvagksiltnisdvhqnm..gycpqfdaidd.ll.t..............greh....lylyarlrgvpaeeiekvanwsikslglsl.yadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwn.tivsiiregravvltshsmeecealctrla 2141
                   e   va  r+r i g  k   l+   +t   +g  +p ++  +  +  g  +gl+g ng gk+t ++ ++         + tv   s    ++d  + m  g c     ++  ll                g e     + +  rl  + ++   + a+  +  lg+s     r   + sgg + +   a a+   p l+lldept  +   a   l      s +  +r vv+ sh     + +ct + 
  MMETSP1174-20130828|15260_1  203 EAARVAAARERSIHGAYKG-ALEASSFTLANPGGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAARQvGDVPANVTVHYVSQEVHLTDKTRVMtpGECVVAADVERrLLlEemevlenaaeagelGEESqqrlVEVMERLEMIESDTASRRAEELLINLGFSDeLRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLAReLKTSEVWADRIVVIVSHDRYFMDEVCTDVL 451 
                   56679999*****999987.588999***********9876655666699**************9998764320233344555555544445555444433555543333321221200000011111111111111112344455555555555556555666666531234455789*****9*99**********************9998777651557899************999999999763 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 5.1e-07
    TIGR01257  882 ggegcstreeralekt.eplt.eeledpeypegindsf...ferelpglvpgvcvknlvkifepsgrpav.drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkd...ietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqleme..amledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlll 1105
                   gg g    + +  ek  e l  +  ed e    +++ +   +e +  g +pg  v+     f+  g p +    +  +  +    +lg ng gktt + ++ g l pt g v +  +    +  +  a +  l + p    +   +  a  +  y +l+    + a   +        +g++  +n  a  lsgg + ++++a     + +++vldept  +d  s  ++ d + 
  MMETSP1174-20130828|15260_1  506 GGSGSQINKMKMKEKQaEKLEvQAGEDAEEKAALQEDMelpLELKSGGELPGFIVQMRGVSFNYPGCPLLfSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQArvaLVNQHHADQIDLELTPLEY-MQREFPAAVGVTAYEHLQRLRGHLAGCGVTggGGPVGSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVK 739 
                   566665555555554313332123456666555543322226777788999999998888888888887524455555566667899*************************9987651112233344455788888765.45666677777777777665555555554400455678899999**********9999999988889999*********999999888887654 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.034       2.3     634     707 ..     218     290 ..     181     309 .. 0.57
   2 !    6.3   0.0    0.0039      0.27     760     828 ..     379     446 ..     363     502 .. 0.77
   3 !   26.4   0.0   3.5e-09   2.4e-07     654     852 ..     576     783 ..     547     789 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.034
    TIGR00957 634 gnsitvknatftwar..depptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqq 707
                  ++  ++++++ft a+  +  p l+    ++ +g    ++g+ g gks++l a+ a      g v  + +v yv q+
  MMETSP1174-20130828|15260_1 218 AYKGALEASSFTLANpgGGAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAAR---QVGDVPANVTVHYVSQE 290
                  24445555555555422345666666666666666666666666666666666553...34555555556666665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0039
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv 828
                   lsgg + r  la a+++  d+ lld+p   +        + + +    + +++  ++v+h   ++ +v
  MMETSP1174-20130828|15260_1 379 ALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAV-MWLARELKTSEVWADRIVVIVSHDRYFMDEV 446
                  59**************************987755444.4455556677788888888888888777765 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 3.5e-09
    TIGR00957 654 lngltlsipegalvavvgqvgcgkssllsallaemdkvegkval..kgsvayvpqqawiqnd...slreni..lfgkaleekyykavleacalladleilpsgdrteigekgv......nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv.dviivlsdgkisemgsyqelldrd 852
                  + + ++ +   + + ++g+ g gk++l+  +l+e+   eg+v +  +  va v q    q d   +  e +   f  a+    y++  +    la   +  +g     g k +       lsggq+ rv+la   + +  i +ld+p   +d      + + v   +g +     + v+h   ++ q+ +  +v+ +g + ++ s+++  +r+
  MMETSP1174-20130828|15260_1 576 FSNAEFGVTAKSRIVLLGENGNGKTTLVKLMLGELTPTEGEVRIhpQARVALVNQHHADQIDlelTPLEYMqrEFPAAVGVTAYEHLQRLRGHLAGCGVTGGGGPVGSGIKDLqnvpaaALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAV-----VCVSHDQFFVNQIsNEALVVNGGAVKKVASFDAYRQRQ 783
                  4556788888889999************************999833578****99877665421122233312477788888888888888888888888888777777775422222279*********************************9999*****9999965.....89**********83468999**********99988885 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0003     0.021     465     617 ..     236     413 ..     181     428 .. 0.71
   2 !    9.3   0.0    0.0011     0.073     457     514 ..     564     622 ..     489     631 .. 0.79
   3 !   18.3   0.0     2e-06   0.00014     583     640 ..     695     752 ..     674     759 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0003
    TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPds...sedfker................glsdkdLeqiLeevkLedlleregg.............wdavqd.WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvd 617
                  g  l+e+ +  +  G++  +iG nG GKs + R ++        +  +p++  + yv q   ++ +t    ++ P       d+++r                +l+++  ++++e+++  +++e +++              d ++    + LsgG + R  +A  ++ +P   +LDE t+ +s+ 
  MMETSP1174-20130828|15260_1 236 GAPLLEDAACTLVRGRSYGLIGRNGMGKSTMLRAFAA-----RQVGDVPANVTVHYVSQEVHLTDKT---RVMTPGEcvvAADVERRllleemevlenaaeagELGEESQQRLVEVMERLEMIESDTAsrraeellinlgfSDELRSrPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSIT 413
                  4557777777788888888999999999999998874.....4566788999999999998888775...4555543111345555555556677777777765555555555555544445555555688888888888644454415799*****************************99985 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0011
    TIGR00954 457 niplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkpe 514
                   +    P    l ++ +f v   + ++++G nG GK  l + +lgel P+ g ++  p+
  MMETSP1174-20130828|15260_1 564 GVSFNYPGCPLLFSNAEFGVTAKSRIVLLGENGNGKTTLVKlMLGELTPTEGEVRIHPQ 622
                  55566677777888899999999****************98458******999988876 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 2e-06
    TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                   LsgG++ R+a+A + +  P+  vLDE t+ + ++   +l + +k ++ +++ vsh +
  MMETSP1174-20130828|15260_1 695 ALSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLESVAALADSVKAFEGAVVCVSHDQ 752
                  69******************************999999****************9975 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.9   1.3e+02     372     387 ..     255     270 ..     240     276 .. 0.83
   2 ?   -2.2   0.0       3.5   2.4e+02     469     533 ..     379     442 ..     363     454 .. 0.72
   3 !   24.2   0.0   3.5e-08   2.5e-06     370     501 ..     589     727 ..     560     773 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.9
    TIGR01194 372 ivGenGcGkstlikll 387
                  ++G nG Gkst+++ +
  MMETSP1174-20130828|15260_1 255 LIGRNGMGKSTMLRAF 270
                  79**********9877 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.5
    TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                  +ls G r r  l +a +    +lllde +     +    +  el        + ++++sh dryf
  MMETSP1174-20130828|15260_1 379 ALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVVIVSH-DRYF 442
                  678888888877777776666788888877776666666666766666566666666666.5777 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 3.5e-08
    TIGR01194 370 vyivGenGcGkstliklllGlyipqeGellldGea...vsdesrddyrdlfsavfady.ylfddlvqpdekkqasldqattylsrleledk.....vkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqd 501
                  + ++GenG Gk+tl+kl+lG   p eGe+ ++ +a   + ++   d  dl  + +      f   v+        l++ + +l   ++          ++dl+   +++ls Gqr r+al +  ++e  +l+lde + + d
  MMETSP1174-20130828|15260_1 589 IVLLGENGNGKTTLVKLMLGELTPTEGEVRIHPQArvaLVNQHHADQIDLELTPLEYMqREFPAAVG--VTAYEHLQRLRGHLAGCGVTGGggpvgSGIKDLQNVPAAALSGGQRSRVALAAVSFKEPHILVLDEPTNNLD 727
                  5578**************************9987621144566667777765554433135777777..4555568999999999999864222115799999999****************************9876655 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0045      0.31     807     878 ..     358     426 ..     322     453 .. 0.56
   2 !   11.4   0.0    0.0002     0.014     825     877 ..     692     741 ..     682     758 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0045
    TIGR00630 807 rklellvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv 878
                  r  ell+++G+      +p  +LsGG   r  La+ + +r     l +lDePt  L +  +  L + l+   
  MMETSP1174-20130828|15260_1 358 RAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFAR---PDLLLLDEPTNHLSITAVMWLARELKTSE 426
                  4444555555544444555555555555555555555544...23555555555555555554444443332 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0002
    TIGR00630 825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrl 877
                  pa +LsGG   rv La+   k      + +lDePt  L ++ ++ L + ++ +
  MMETSP1174-20130828|15260_1 692 PAAALSGGQRSRVALAAVSFK---EPHILVLDEPTNNLDLESVAALADSVKAF 741
                  7899************86544...56799***************998877655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.0       3.3   2.3e+02     690     730 ..      33      73 ..      22     100 .. 0.60
   2 !    8.4   0.0     0.001     0.071      87     264 ..     250     434 ..     236     439 .. 0.70
   3 ?    0.8   0.0      0.21        15     792     809 ..     589     606 ..     508     623 .. 0.63
   4 !    9.3   0.0   0.00058     0.041     210     252 ..     696     734 ..     691     762 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.3
    TIGR00956 690 lefnkgakkkgeilvfkkgelkkakkkeeeseskkndieag 730
                  + + ++ak+k+e l  +  ++k+a+kk++++++  ++ +++
  MMETSP1174-20130828|15260_1  33 SAMADFAKQKEERLKRESMAKKEAAKKAQKEAKALKEKKRE 73 
                  34455666666666666666666655544444433333332 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.001
    TIGR00956  87 gelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglske...eikkhyrgdvvYsaetdvHl..psltvketLdfaarl.ktpqnRv.kgvsreeyakk.ladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatal 264
                  g+   ++Gr g G+st+L++ a++  g    ++ +++Y + + +     +    g+ v +a+ +  l   ++ v e    a +l    q+R  + ++r e++++ +a+  +  + ++  +  +     +  +sGG r R  +a ++ a++ ++++D+ t  L  +  + +++ lkts   ++  ++
  MMETSP1174-20130828|15260_1 250 GRSYGLIGRNGMGKSTMLRAFAARQVGDVP-ANVTVHYVSQEVHltdKTRVMTPGECVVAADVERRLllEEMEVLENAAEAGELgEESQQRLvEVMERLEMIESdTASRRAEELLINLGFSDELRSRPLEALSGGWRVRTMLAAAIFARPDLLLLDEPTNHLSITAVMWLARELKTSEVWADRIVV 434
                  5555689***************99988666.788888877654411155556789***99999877511455555444444444334566651444566666552333444455555666666777778999******************************888888899999999877776655 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.21
    TIGR00956 792 tALmGasGAGkttLlnvL 809
                    L+G+ G GkttL+  +
  MMETSP1174-20130828|15260_1 589 IVLLGENGNGKTTLVKLM 606
                  346777777777776544 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00058
    TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkal 252
                  +sGG+r Rv++a v+  +++i+++D+ t  LD       v al
  MMETSP1174-20130828|15260_1 696 LSGGQRSRVALAAVSFKEPHILVLDEPTNNLDLES----VAAL 734
                  69999999999999999999999999999988332....2222 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0019      0.13       7      52 ..     254     297 ..     249     321 .. 0.81
   2 ?    6.7   0.0     0.018       1.2       4      26 ..     587     609 ..     584     628 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0019
    TIGR00231   7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt 52 
                  +++G+ + GKst+l  ++ +++  +   + vt +yv++ +    kt
  MMETSP1174-20130828|15260_1 254 GLIGRNGMGKSTMLRAFAARQVGDVP--ANVTVHYVSQEVHLTDKT 297
                  89*******************33333..59999**99988776655 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.018
    TIGR00231   4 ikivivGhvdvGKstLlnsllkn 26 
                   +iv++G+ + GK+tL + +l++
  MMETSP1174-20130828|15260_1 587 SRIVLLGENGNGKTTLVKLMLGE 609
                  68**************9988875 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.53        37      49     119 ..     256     327 ..     252     374 .. 0.74
   2 !   10.2   0.0    0.0012     0.081      36      68 ..     580     611 ..     576     624 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.53
    TIGR03015  49 tGevGaGkttlvrnllkkleae..kvvlaklvntkvdaedllrmvaadfGletegrdkvallreleeflieqa 119
                   G  G Gk t++r +  ++  +    v  + v+ +v+ +d  r+++    + ++++++  ll+e+e  l ++a
  MMETSP1174-20130828|15260_1 256 IGRNGMGKSTMLRAFAARQVGDvpANVTVHYVSQEVHLTDKTRVMTPGECVVAADVERRLLLEEMEV-LENAA 327
                  577899********99887632114567788999999999999999999999999999999988874.34444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0012
    TIGR03015  36 eyGlsereGfilitGevGaGkttlvrnllkkle 68 
                  e+G++ ++  i++ Ge G Gkttlv+ +l +l+
  MMETSP1174-20130828|15260_1 580 EFGVTAKS-RIVLLGENGNGKTTLVKLMLGELT 611
                  67777655.58899**************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       471  (0.114822); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        74  (0.01804); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 2.15u 0.21s 00:00:02.36 Elapsed: 00:00:02.73
# Mc/sec: 384.85
//
Query:       MMETSP1174-20130828|15262_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059    9.0   2.3      0.072    8.7   1.6    1.0  1  TIGR01739 tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase


Domain annotation for each model (and alignments):
>> TIGR01739  tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6   1.8e-05     0.072      51     200 ..      27     175 ..      19     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 1.8e-05
    TIGR01739  51 lkelakrhiellyklllnketevteldiekaeslenfegsvgpeevaalaeeddaleqkimlsalkdldsvavaastsaeldnvsiysvaldtllslkstlvltdereaievetallhasaniqsngqqlenlrflssllpgvspvasal 200
                  +k+ +k +i++l++ll +++ e  + +i+++  + ++e++v++++v  +    + +++k+++++  ++ + a++++  +e d+  ++  al+++++   + + + +++  + ++  lha+   ++  + ++n r ++  l     va+++
  MMETSP1174-20130828|15262_1  27 KKSSRKNQIRSLQRLLSKEVGEDAKKSIQEKLAVLQEEVVVKTQQVFEQKRVLKYRKNKFFDRKKLERRLKAAQKTL-EEGDEGEASKDALNKEIRRLQEDLIYVNHFPKKEKYMSLHAKEYDEKTKKRMDNCRKQAMALAKEASVAIST 175
                  34444899********************98888****************************************9999.589****************************************999999*********99999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       518  (0.12628); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 841.43
//
Query:       MMETSP1174-20130828|15263_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1281.68
//
Query:       MMETSP1174-20130828|15266_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|15265_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-195  648.4   0.4   2.1e-195  648.0   0.3    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    5.7e-75  250.5   1.3    8.9e-75  249.9   0.9    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.3e-69  233.1   0.6    1.9e-69  232.6   0.4    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    5.9e-39  131.9   0.2    1.2e-38  130.9   0.1    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
    1.1e-05   22.4   0.6     0.0002   18.2   0.0    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.1e-05   22.5   0.0    2.2e-05   21.5   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    8.3e-05   19.1   0.0    0.00014   18.4   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00014   18.9   0.0    0.00026   18.0   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00043   16.4   0.1      0.046    9.7   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00051   16.4   0.4     0.0011   15.3   0.3    1.4  1  TIGR00763 lon: ATP-dependent protease La
     0.0009   16.2   0.0     0.0015   15.4   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0012   16.2   0.0     0.0027   15.1   0.0    1.6  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0021   14.8   1.5      0.033   10.9   0.0    2.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0075   12.7   0.5      0.049   10.0   0.1    2.0  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.014   13.3   1.2       0.02   12.7   0.1    1.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
       0.02   11.3   0.0      0.033   10.6   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  648.0   0.3  8.1e-198  2.1e-195       5     495 ..     155     654 ..     150     655 .. 0.91

  Alignments for each domain:
  == domain 1    score: 648.0 bits;  conditional E-value: 8.1e-198
    TIGR01241   5 vllsl.lplilllvglfllflrqakga...ggsr..ifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag...lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGms.eklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                  +l++l +p+ lll++l   +   + g    gg +  if++gksk+k+ +e ++ vtfkdvaG++  k el+e+vdfLk+p+k++++Gak P+Gv++ GpPGtGktLlakavaGeagvpf+  sGs+fvemfvGvGasr+rDlf qakknaPci+fiDeiDa+G++r+      gggndereqtLnq+L+emDGfe++ gv+v+aatnr+dvLD aLlrPGrfDr+v vd+Pd +gr +il+vha+++ l+e+v l+kva rt+GfsGa lanl+neaa++aar++k++++++e+e a dr ++G+ek++ + se +k+lvayheaGha++g+l+++ d v kvti+pr + a+G+tl++P+e   d+ +++++ l+a++av+lgGrvae +++g  ++ttGas Dl++++++ar+mvt++G++ + lga a+++ +      +++ + +  se+t ++iD+evk+++++ayk + + l+e++  l++l++eL+eketi++++l++l+
  MMETSP1174-20130828|15265_1 155 TLINLaFPIALLLLFLAPRMGGGQGGPgggGG-QggIFDMGKSKSKIEMEPETGVTFKDVAGCEGSKLELTEVVDFLKRPEKYAAVGAKAPRGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEMFVGVGASRIRDLFSQAKKNAPCIMFIDEIDAIGKSRAGNggfSGGGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRAQILAVHARNKPLDESVVLEKVAARTTGFSGASLANLLNEAAIVAARRDKTTISISEVEFALDRLTVGMEKRTGMKSETRKELVAYHEAGHAIMGVLTPDYDAVGKVTIVPRTNgAGGFTLFVPSEetqDSGMYTRRYLEAQLAVALGGRVAELLAYGddDITTGASGDLQRVADVARRMVTQWGFAtDALGATAWDTGN------NGFGQPRIASEDTETRIDAEVKMLVNSAYKVCIDCLTENRLLLDKLKDELMEKETIDTDDLDKLV 654
                  44444133333333333222222332222122.245**********************************************************************************************************************************6433767899******************************************************************************************************************************************************************************9*********98667889**************************999************************973678888888433......445566899****************************************************9987 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.9   0.9   3.5e-77   8.9e-75     111     362 ..     200     453 ..     193     455 .. 0.96

  Alignments for each domain:
  == domain 1    score: 249.9 bits;  conditional E-value: 3.5e-77
    TIGR01242 111 leveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrlds...stsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                  +e+e    v+++d+ G e    e+ e+v++ lk+pe ++ vG + p+Gv++ GppGtGktllakava e+   fi   gse+v+ ++G Ga+ +r++f  ak+ ap+i+fideidai+  r  +   s +G+ e ++tl q+l+e+dGf+    v viaatnr d+ld allrpGrfdr + v lpd+ Gr +il +h+r+  l e v le++a  t G+sGa l  +  ea + a r+++++++++++  a+++
  MMETSP1174-20130828|15265_1 200 IEMEPETGVTFKDVAGCEGSKLELTEVVDF-LKRPEKYAAVGAKAPRGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEMFVGVGASRIRDLFSQAKKNAPCIMFIDEIDAIGKSRAGNggfSGGGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRAQILAVHARNKPLDESVVLEKVAARTTGFSGASLANLLNEAAIVAARRDKTTISISEVEFALDR 453
                  67888889*******************997.9**************************************************************************************999976222578999****************************************************************************************************************9999988887 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.4   7.3e-72   1.9e-69     450     688 ..     208     450 ..     199     498 .. 0.90

  Alignments for each domain:
  == domain 1    score: 232.6 bits;  conditional E-value: 7.3e-72
    TIGR01243 450 vkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadls.....eavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleae 688
                  v ++d+ g e  k el e v++ lk +e +  +g + p+gv++ gppgtgktllakava e+g  fia  g e +  +vg    +ir++f +a++ ap+i+f+deidai  +r  + +     +   ++ +nq+lte+dg+e  s+vvviaatnr d+ld allrpgr+dr + v  pd+  r +i+ +h+r+ pl e v le++a +t g++ga ++ +  eaa+ a r+   +++   +e  
  MMETSP1174-20130828|15265_1 208 VTFKDVAGCEGSKLELTEVVDF-LKRPEKYAAVGAKAPRGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEMFVGVGASRIRDLFSQAKKNAPCIMFIDEIDAIGKSRAGNGGfsgggNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRAQILAVHARNKPLDESVVLEKVAARTTGFSGASLANLLNEAAIVAARRDKTTISISEVEFA 450
                  899*****************98.9*************************************************************************************999965543111114467789***************************************************************************************************987765555555544 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.1   4.7e-41   1.2e-38     173     388 ..     202     406 ..     194     455 .. 0.81

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 4.7e-41
    TIGR03689 173 leevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr.G....sGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl 388
                  +e    vt++d+ G +    ++ + v++ ++++e y + + k+P+Gv++ GPPG+Gktl+akava            a   f+   G e+++ +vG    +ir +f++a+++a    P ++f+de+d++ + r G    sG   d     + q+l+e+dG e  + v+vi a+nr d++d a+lrPGr+d ++ ++ Pd+++ a+ila +  +  Pl+e +
  MMETSP1174-20130828|15265_1 202 MEPETGVTFKDVAGCEGSKLELTEVVDF-LKRPEKYAAVGAKAPRGVIMEGPPGTGKTLLAKAVAGE----------AGVPFIAASGSEFVEMFVGVGASRIRDLFSQAKKNA----PCIMFIDEIDAIGKSRaGnggfSGGGNDEREQTLNQILTEMDGFEGASGVVVIAATNRADVLDAALLRPGRFDRRVPVDLPDKAGRAQILAVHARN-KPLDESV 406
                  55556799****9998877778888885.5789*******************************964..........3457***************************99876....*************999533334455678888999********************************************************988543.3553332 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     8e-07    0.0002      46     104 ..     243     299 ..     240     303 .. 0.92
   2 ?    2.5   0.1     0.046        12     248     264 ..     304     320 ..     298     346 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8e-07
    TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                   P+ ++m G+ G Gkt +a+ +a  a++Pfi    + f e+ +vG    s +rdl ++a
  MMETSP1174-20130828|15265_1 243 APRGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEM-FVGVG-ASRIRDLFSQA 299
                  5999************************************7.99976.5889***9887 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.046
    TIGR00390 248 sGiifideidkiakkge 264
                    i+fideid i k+ +
  MMETSP1174-20130828|15265_1 304 PCIMFIDEIDAIGKSRA 320
                  579*********99864 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   8.6e-08   2.2e-05     120     197 ..     247     318 ..     238     333 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 8.6e-08
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                  +++ Gp G+Gktlla+++a e  vpf  a  + + e  +vG     i   l+ +a    +k    i++ideid i + 
  MMETSP1174-20130828|15265_1 247 VIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEM-FVGVGASRI-RDLFSQA----KKNAPCIMFIDEIDAIGKS 318
                  5677**********************99999999996.999888775.5666655....566789**********885 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.5e-07   0.00014     312     428 ..     244     364 ..     221     382 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.5e-07
    TIGR03922 312 skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgak......ddfGleaidtLLarlEn..dRdrlvviiAGYekdl 428
                   + +++ GPPGtGkt +A++va   aG+  ++       s ++++  ++g  + +  +l  +a      ++F+DE+ a+ + r g++      +d   + ++++L  ++       +vvi A  ++d+
  MMETSP1174-20130828|15265_1 244 PRGVIMEGPPGTGKTLLAKAVAGE-AGVPFIA------ASGSEFVEMFVGVGASRIRDLFSQAKKNapcIMFIDEIDAIGKSRAGNGgfsgggNDEREQTLNQILTEMDGfeGASGVVVIAATNRADV 364
                  4678999**************975.8887765......57899***************9998876433389*******99987766511111144446788888888875213455677777666654 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06   0.00026      31      95 ..     245     317 ..     235     320 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1e-06
    TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrlsk 95 
                    v++ GPPG Gkt lak +a e gv    +sg ++        ++ +  ++++ +++   ++fiDei ++ k
  MMETSP1174-20130828|15265_1 245 RGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEmfvgvgASRIRDLFSQAKKNApcIMFIDEIDAIGK 317
                  56899**********************99999998754222222456666777766653449******99876 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00018     0.046     486     526 ..     244     283 ..     222     287 .. 0.85
   2 !    4.6   0.0    0.0063       1.6     264     298 ..     290     324 ..     283     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00018
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                  P g  ++ Gp G Gkt lak++a e gv ++    se+ e 
  MMETSP1174-20130828|15265_1 244 PRG-VIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSEFVEM 283
                  555.4789*****************************9985 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0063
    TIGR02639 264 erlkevveeiekeedailfiDeihtivgagatsgg 298
                   r++++ ++ +k+   i+fiDei +i  + a+ gg
  MMETSP1174-20130828|15265_1 290 SRIRDLFSQAKKNAPCIMFIDEIDAIGKSRAGNGG 324
                  799*********************99777666665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   4.3e-06    0.0011     356     439 ..     247     322 ..     235     325 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.3e-06
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvrGd 439
                  +++ GPPG GKt lak++A   +  f+  s  G + v         +vG    +i + + ++k++ P ++++DEiD +g+s +G+
  MMETSP1174-20130828|15265_1 247 VIMEGPPGTGKTLLAKAVAGEAGVPFIAAS--GSEFV-------EMFVGVGASRIRDLFSQAKKNAPcIMFIDEIDAIGKSRAGN 322
                  4579**********************9776..54444.......458888889**************44679*******998885 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     6e-06    0.0015      43     125 ..     245     325 ..     209     386 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6e-06
    TIGR02881  43 lhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysl..arGGekdf 125
                    +i++G PGtGkt +a+ +a    e +v     +i +  +++v  ++G  a ++r++    kk    ++fide  ++  +r G+  f
  MMETSP1174-20130828|15265_1 245 RGVIMEGPPGTGKTLLAKAVAG---EAGV----PFIAASGSEFVEMFVGVGASRIRDLFsqaKKNAPCIMFIDEIDAIgkSRAGNGGF 325
                  45789************99984...7776....589999*****************987222556679*****965542277777666 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     1e-05    0.0027       6      56 ..     225     279 ..     221     294 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1e-05
    TIGR02640   6 evkrvtsralrylksg....ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  ev +  +r ++y  +g    + v + GP GtGkt la +va + + P +   G +
  MMETSP1174-20130828|15265_1 225 EVVDFLKRPEKYAAVGakapRGVIMEGPPGTGKTLLAKAVAGEAGVPFIAASGSE 279
                  566667777777766533226799***********************99988875 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00013     0.033      35      61 ..     239     265 ..     224     270 .. 0.88
   2 ?   -4.4   0.0       5.4   1.4e+03     127     141 ..     301     315 ..     295     319 .. 0.75
   3 ?    2.1   0.2     0.059        15     246     277 ..     425     456 ..     394     477 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
    TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkvl 61 
                  +  + p+ v++ G++GtGKt+ +k+v 
  MMETSP1174-20130828|15265_1 239 VGAKAPRGVIMEGPPGTGKTLLAKAVA 265
                  5567899*****************997 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 5.4
    TIGR02928 127 redsliivLDEiDkl 141
                  ++   i+ +DEiD +
  MMETSP1174-20130828|15265_1 301 KNAPCIMFIDEIDAI 315
                  556678899****98 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.059
    TIGR02928 246 dlLreageiAeeegsekvteehvekAqekiek 277
                  +lL ea+ +A +++++++ +++ve A +++ +
  MMETSP1174-20130828|15265_1 425 NLLNEAAIVAARRDKTTISISEVEFALDRLTV 456
                  79**********************99888765 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00019     0.049      79     112 ..     237     270 ..     232     304 .. 0.76
   2 ?    0.4   0.0      0.17        42     297     337 ..     419     459 ..     394     499 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
    TIGR02902  79 aalcGpnpqhviiyGppGvGktaaarlvleeakk 112
                  aa+    p+ vi+ GppG Gkt  a+ v  ea  
  MMETSP1174-20130828|15265_1 237 AAVGAKAPRGVIMEGPPGTGKTLLAKAVAGEAGV 270
                  6777889******************999988854 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
    TIGR02902 297 nGreavnlvqlaaGlalnenrkkilaediewviesgqyspk 337
                  +G    nl++ aa +a+  ++ +i ++++e+ ++   + + 
  MMETSP1174-20130828|15265_1 419 SGASLANLLNEAAIVAARRDKTTISISEVEFALDRLTVGME 459
                  788899*************************8876554444 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.8e-05      0.02       3      31 ..     247     275 ..     246     283 .. 0.91
   2 ?   -3.0   0.1       5.5   1.4e+03      53      72 ..     641     661 ..     628     665 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.8e-05
    TIGR02173   3 ivisGpPGsGkttvakilaeklslklisa 31 
                  +++ GpPG+Gkt +ak +a + ++ +i+a
  MMETSP1174-20130828|15265_1 247 VIMEGPPGTGKTLLAKAVAGEAGVPFIAA 275
                  6889*********************9987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.5
    TIGR02173  53 eekeiDk.kiDrkikeiaeke 72 
                  e++ iD  ++D+ +ke+a ++
  MMETSP1174-20130828|15265_1 641 EKETIDTdDLDKLVKEYAVNA 661
                  556677426888888888665 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013     0.033     210     233 ..     243     266 ..     196     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR00368 210 GghnllllGPPGsGktllakrlqg 233
                      +++ GPPG+Gktllak + g
  MMETSP1174-20130828|15265_1 243 APRGVIMEGPPGTGKTLLAKAVAG 266
                  34568999************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.69u 0.18s 00:00:00.86 Elapsed: 00:00:00.77
# Mc/sec: 1143.33
//
Query:       MMETSP1174-20130828|15267_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.61
# Mc/sec: 1068.90
//
Query:       MMETSP1174-20130828|15269_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|15270_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.86
# Mc/sec: 1309.15
//
Query:       MMETSP1174-20130828|15272_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   10.8   2.0       0.13    8.5   0.2    1.9  2  TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase


Domain annotation for each model (and alignments):
>> TIGR02487  NrdD: anaerobic ribonucleoside-triphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   3.3e-05      0.13     510     562 ..      10      61 ..       4      71 .. 0.84
   2 ?    1.8   0.0    0.0036        15     429     462 ..      82     123 ..      76     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 3.3e-05
    TIGR02487 510 vkkaakne.igYlsinkpvdvCedcgykgegldkCpkCGsekievlsRitGYlr 562
                  +kk+++++ i +l   ++ + C d +  + +   C +CG+  ++    i GY +
  MMETSP1174-20130828|15272_1  10 WKKIMMKTtIAFLLLVSASRACPDASLCENQD--CGSCGNSCCKLEAEIPGYST 61 
                  788877777*****************998877..*******9999999****98 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0036
    TIGR02487 429 tPaEslagrfakkdreefge....ikgvtdk...dYytN.Sf 462
                  tP+E++ g +   d   +g+    i  + ++   +Yy N S+
  MMETSP1174-20130828|15272_1  82 TPSETAEGTLGFADLRAYGKpvdfIGQAIHTtpsPYYYNdSI 123
                  9******************99776333222244465555155 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|15271_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1395.95
//
Query:       MMETSP1174-20130828|15275_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   50.4  19.3    3.6e-11   40.1   0.1    2.3  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.2e-13   47.1   0.2    5.2e-13   46.8   0.2    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.4e-13   46.9   1.7    4.4e-13   46.9   1.2    2.3  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.1e-07   29.7   0.0    2.3e-07   28.6   0.0    1.5  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    6.6e-07   27.0   0.0    1.1e-06   26.3   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      6e-05   19.8   0.1    0.00018   18.3   0.1    1.7  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00052   16.9   0.7     0.0021   14.9   0.0    1.6  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
     0.0051   13.4   0.0     0.0079   12.8   0.0    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1     7e-14   3.6e-11     274     381 ..       4     110 ..       1     117 [. 0.87
   2 !   10.4  11.7   7.1e-05     0.036       5     199 ..     139     335 ..     105     339 .. 0.60

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 7e-14
    TIGR01642 274 knsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqat 381
                  k sd+  ++  k+   ++ + +   l+ignL  ++++  + e+   +G ++  +l+ d +  lsKG+a++e++   ++++A   L+G ++  +k++v +  v ++q  
  MMETSP1174-20130828|15275_1   4 KMSDVETPST-KTEPKRSQSPESTMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNLSKGFAYVEFESRKDAEQAQLYLDGAQVDSNKIKVAFILVQKRQRR 110
                  5566666666.44455556667789**************************************************************************999998865 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 7.1e-05
    TIGR01642   5 kdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrr.drrrsrrkdsR.dRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppk..yeavtavqakasqvansvpgiaqkssltstekll.....aegskitdlpvlaveqqatrkaRrlyvgniPpeakeeavvdFfnd 199
                  +  ++E++r rd d+ + R+ +R r+ +r R+ drr    r   +dsR +R+  ry  r++s  +    r+  +++rrr  +s +  +    +r+  +  +++kd     l  v+pp+   ea+  v  k++ v+  v +  + + + +   l+     a   ++  +p+ + +++ t  aR   v+ i  +a++    + +n+
  MMETSP1174-20130828|15275_1 139 RSTSNENKRSRDVDH-HKRDSDRPRSSERARSSDRRlPDSR-PAHDSRySRNAPRYGGRERSPARRPPPRKWPSPQRRRLSPSPRR-RRSPVGRNNNPVTSQRKDIG-PPLDGVAPPGsgLEAAAVVVKKTGAVN--VKTARPGPRVGT-RDLIvavapAAPAEVRHPPPDPGKSGGTGPARGFNVATITATANQRPACSMMNN 335
                  223477777777744.4567777777777777777732222.23444435667777777766666666666666655554444443.33344566666666664433.334445555411444444444444444..777566666655.444446666666778888888888888888888888888888888777777665 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.2     1e-15   5.2e-13     161     271 ..       8     120 ..       1     183 [. 0.85

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 1e-15
    TIGR01628 161 vgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdek.nrkrgfafvnyekaedAkkAveelngkkitlaa.tgkilyVgraqkraeReaelkak 271
                  v+    k+e + +++ + t l + nl  +v e +l+e+ + +G+i  +  + d+k n ++gfa+v++e+  dA++A   l+g +++  + +   + V++ q+r+e  +  +++
  MMETSP1174-20130828|15275_1   8 VETPSTKTEPKRSQSPESTMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKvNLSKGFAYVEFESRKDAEQAQLYLDGAQVDSNKiKVAFILVQKRQRRSESPKRVEKE 120
                  555556666667899999*******************************9999874779***************************666666667777777777654333322 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   1.2   8.6e-16   4.4e-13     209     310 ..      15     116 ..       4     127 .. 0.83
   2 ?  -10.6  27.8         8   4.1e+03      18      96 ..     119     198 ..     104     242 .. 0.53

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 8.6e-16
    TIGR01622 209 lsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslask 310
                  ++ +  +s   + L +Gnl  n+ E +L +i   +G+i +v+l+ D++   skG+ +++F+  + a +A+  l G ++   +ikv++    + +  +++ ++
  MMETSP1174-20130828|15275_1  15 TEPKRSQSPESTMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNLSKGFAYVEFESRKDAEQAQLYLDGAQVDSNKIKVAFILVQKRQRRSESPKR 116
                  3334455667889************************************************************************98665555555544444 PP

  == domain 2    score: -10.6 bits;  conditional E-value: 8
    TIGR01622  18 drdrerdksrersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrresererereker.rredevrrkrkere 96 
                  +++r rd+      +r+ +R++ + + +r rd d+ +rd d++r  er + ++r+   +r+ +++r  r +  r   +er 
  MMETSP1174-20130828|15275_1 119 KEQRSRDAPPSARDSRNPSRRSTSnENKRSRDVDHHKRDSDRPRSSERARSSDRRLPDSRPAHDSRySR-NAPRYGGRERS 198
                  344555554433334444444433344455555555566777777777777777777777777777333.44443333332 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   4.4e-10   2.3e-07     193     252 ..      25      84 ..      16     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.4e-10
    TIGR01659 193 dtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeai 252
                   t l++ nl+r + +  l+ i g yg+i + +++ dk+    +g a+v f+ r++a++a 
  MMETSP1174-20130828|15275_1  25 STMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNLSKGFAYVEFESRKDAEQAQ 84 
                  578889999999999999999999999999999999999999999999999999888774 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.1e-09   1.1e-06      89     167 ..      25     101 ..      11     143 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.1e-09
    TIGR01661  89 ganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkf 167
                   + l++  l +++   +le++   +Gki    ++ d+  +lskG  ++ f+ r++a++a   l+G++  +  ++i v f
  MMETSP1174-20130828|15275_1  25 STMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNLSKGFAYVEFESRKDAEQAQLYLDGAQVDS--NKIKVAF 101
                  4567788888889999999999999999999999999999999999999999999999999999876553..4444444 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.5e-07   0.00018      59     121 ..      26      89 ..      17     121 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.5e-07
    TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGk.nrGyafvtfcnkeeakeavkelnn 121
                  + + +G + r++ e  l  ++ + Gki ++ lm+d + +  +G+a+v f  +++a++a   l+ 
  MMETSP1174-20130828|15275_1  26 TMLHIGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNlSKGFAYVEFESRKDAEQAQLYLDG 89 
                  66889******************************6554389*******999999999766665 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.2e-06    0.0021       2      54 ..      25      83 ..      24     106 .. 0.72
   2 ?    1.4   0.2     0.051        26     156     180 ..      70      94 ..      70     234 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.2e-06
    TIGR01649  2 SkVvHvRnlpeevveadlvelliefGkvsyv.lvlkgkr.....qAlvEfedeesAkal 54
                 S  +H+ nl+++v ea l e++  +Gk+  v l++ +k       A+vEfe  + A+++
  MMETSP1174-20130828|15275_1 25 STMLHIGNLTRNVREAHLEEICGTYGKIRKVdLMIDKKVnlskgFAYVEFESRKDAEQA 83
                 77889999999999999999999999999883444443222222588999988887765 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.051
    TIGR01649 156 AlvefesvesAqkAKaaldgadiYn 180
                  A vefes + A++A+  ldga++ +
  MMETSP1174-20130828|15275_1  70 AYVEFESRKDAEQAQLYLDGAQVDS 94 
                  5688888888888888888887754 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.5e-05    0.0079     110     179 ..      30     100 ..      10     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                  +G +  +++e  l +    +G i+ +++  d   +  kgfa+ve e    a  a+  ++ga +    +kv 
  MMETSP1174-20130828|15275_1  30 IGNLTRNVREAHLEEICGTYGKIRKVDLMIDKKVNLSKGFAYVEfESRKDAEQAQLYLDGAQVDSNKIKVA 100
                  688899999****************************************************9999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 851.70
//
Query:       MMETSP1174-20130828|15273_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.9   1.4      0.036   11.1   1.0    1.5  1  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase


Domain annotation for each model (and alignments):
>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   8.7e-06     0.036      62     160 ..      97     201 ..      76     241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.7e-06
    TIGR01508  62 akeer.....nPvrvvvdsklrvpldarilnkeaktlvavseaeseekveelekkgvevvkfgeervdLeklldaleskgvrrllveGG.GtLifslikenLvDe 160
                   k ++     n   vvv++k ++ l+ ri +++ + +   + +   e+ ++ e+    +      r  L+kl + +e++ vr + +e    +L+   ++ +L D 
  MMETSP1174-20130828|15273_1  97 LKAKKlefekNLKMVVVTQKENLRLEKRIRETKMSMVAEQAVHRRTEEEQKKEAFNTRMNFESYSRQTLRKLHEEYEQRAVREMELESTnAHLNKHRLSAKLSDR 201
                  444444444477789****************9999887655444444444444444666677788999****************999752678777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       531  (0.129449); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 930.75
//
Query:       MMETSP1174-20130828|15277_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 631.25
//
Query:       MMETSP1174-20130828|15279_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-66  217.8   0.2      9e-66  217.5   0.2    1.1  1  TIGR01999 iscU: FeS cluster assembly scaffold IscU
    1.1e-44  149.6   0.3    1.4e-44  149.3   0.2    1.1  1  TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU
    5.7e-40  135.4   0.1      7e-40  135.1   0.1    1.1  1  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
    1.8e-18   64.7   0.2    6.9e-18   62.8   0.0    1.8  2  TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family
     0.0044   14.5   0.4     0.0071   13.8   0.0    1.6  2  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01999  iscU: FeS cluster assembly scaffold IscU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.2   1.1e-68     9e-66       1     124 []      33     156 ..      33     156 .. 0.99

  Alignments for each domain:
  == domain 1    score: 217.5 bits;  conditional E-value: 1.1e-68
    TIGR01999   1 ysekvldhyenprnvGsldkedknvGtglvGapacGdvlklqikvnddgiiedakfktfGcGsaiassslvtelikGksleeakkiknteiaeelslppvklhcsllaedaikaaikdykkkre 124
                  y++++++hyenprnvGsldk+ + vGtglvGapacGdv+klqi+v+++g+i+++kfktfGcGsaiasss++te+++Gk+++ea++ikn++ia  l+lppvklhcs+laedaikaa+kdyk+k+e
  MMETSP1174-20130828|15279_1  33 YHDNIVEHYENPRNVGSLDKNSEYVGTGLVGAPACGDVMKLQIRVDENGVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDIAGFLKLPPVKLHCSMLAEDAIKAAVKDYKSKKE 156
                  99***********************************************************************************************************************985 PP

>> TIGR03419  NifU_clost: FeS cluster assembly scaffold protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.2   1.7e-47   1.4e-44       1     120 [.      33     155 ..      33     156 .. 0.94

  Alignments for each domain:
  == domain 1    score: 149.3 bits;  conditional E-value: 1.7e-47
    TIGR03419   1 ysekvldhftnprnvGeiedad...GvGevgnakcGdimkiylkvedd.iikdvkfktfGcgaaiasssmatelikGktleealeltnkavaealdGlppvklhcsvlaeeaikkaiedyrekk 120
                  y + +++h+ nprnvG++++ +   G+G vg ++cGd+mk+ ++v+++ +i++ kfktfGcg+aiasss++te + Gkt++ea+ + nk++a  l+ lppvklhcs+lae+aik+a++dy++kk
  MMETSP1174-20130828|15279_1  33 YHDNIVEHYENPRNVGSLDKNSeyvGTGLVGAPACGDVMKLQIRVDENgVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDIAGFLK-LPPVKLHCSMLAEDAIKAAVKDYKSKK 155
                  8899*************975433458899****************998799*****************************************9996.************************998 PP

>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.1   8.5e-43     7e-40       4     124 ..      33     154 ..      31     159 .] 0.95

  Alignments for each domain:
  == domain 1    score: 135.1 bits;  conditional E-value: 8.5e-43
    TIGR02000   4 ysdkvkehfynPknagvveeane...vGevGslscGdalrlmlkvdpesdkiedagfqtfGcgsaiasssaltelikGktldealkvsnkdiadyldGlPpekmhcsvmGqealeaaianyrGe 124
                  y d + eh+ nP+n g ++++ e   +G vG+ +cGd ++l+++vd e+ +i++++f+tfGcgsaiasss +te + Gkt+dea+ + nkdia +l  lPp k+hcs++ ++a++aa+ +y+ +
  MMETSP1174-20130828|15279_1  33 YHDNIVEHYENPRNVGSLDKNSEyvgTGLVGAPACGDVMKLQIRVD-ENGVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDIAGFLK-LPPVKLHCSMLAEDAIKAAVKDYKSK 154
                  99*******************99988899****************9.5689*********************************************7.***********************976 PP

>> TIGR01994  SUF_scaf_2: SUF system FeS assembly protein, NifU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   8.4e-21   6.9e-18       4      88 ..      32     120 ..      29     129 .. 0.90
   2 ?   -0.1   0.0      0.22   1.8e+02     119     136 ..     131     148 ..     118     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 8.4e-21
    TIGR01994   4 lYrevildhakkkrhrgkledaevqee...gkNpsCGDeitltvklegd.riediafegeGCsisqAsaslmteaikGktveealklve 88 
                   Y++ i++h++++r+ g l++++ ++    +  p CGD+++l+++++++ +i++ +f+  GC  + As+s+mte + Gkt++ea+++ +
  MMETSP1174-20130828|15279_1  32 TYHDNIVEHYENPRNVGSLDKNSEYVGtglVGAPACGDVMKLQIRVDENgVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKN 120
                  6999***************99988754111569**************999**********************************99876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.22
    TIGR01994 119 paRikCalLaWkaleeal 136
                  p++++C +La  a+++a+
  MMETSP1174-20130828|15279_1 131 PVKLHCSMLAEDAIKAAV 148
                  6899******99999987 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.7e-06    0.0071     113     161 ..      75     123 ..      47     128 .. 0.88
   2 ?   -2.5   0.0      0.89   7.3e+02     156     166 ..     139     149 ..     135     156 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.7e-06
    TIGR03634 113 yslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkai 161
                  + +D  G i+e k+ + G Gs +a + + +e+ e+ +++ea+ +  k i
  MMETSP1174-20130828|15279_1  75 IRVDENGVITESKFKTFGCGSAIASSSVMTEWVEGKTIDEAMAIKNKDI 123
                  469**************************************99877765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.89
    TIGR03634 156 lavkaiksaie 166
                  la  aik+a++
  MMETSP1174-20130828|15279_1 139 LAEDAIKAAVK 149
                  55556665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 599.61
//
Query:       MMETSP1174-20130828|15276_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   16.6   0.0     0.0021   15.5   0.0    1.6  1  TIGR03464 HpnC: squalene synthase HpnC


Domain annotation for each model (and alignments):
>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     5e-07    0.0021      19      55 ..     202     237 ..     197     295 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5e-07
    TIGR03464  19 rlrapvaalYafaRtaDDlaDegsasaeerlalLdal 55 
                  +lr+ v++ Y+faR a+ ++D +s+s ee+la L+++
  MMETSP1174-20130828|15276_1 202 ELREIVKDNYQFARCAEYIGDRSSLS-EEKLAGLNEI 237
                  79********************7777.999*999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.82
# Mc/sec: 783.89
//
Query:       MMETSP1174-20130828|15285_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|15291_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.49
# Mc/sec: 269.37
//
Query:       MMETSP1174-20130828|15294_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|15295_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1174-20130828|15292_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    7.9   2.5       0.21    7.4   0.6    1.8  2  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.015        61     380     433 ..     211     264 ..     204     273 .. 0.83
   2 ?    7.4   0.6     5e-05      0.21     413     466 ..     419     472 ..     393     475 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.015
    TIGR02865 380 eelieeleekkkpksklpkelerkCvkrkelvkeleeilklykineklkkrlee 433
                   + ++ + ++k++  +l+++l  +  k+k l+k++ + l   k + +lk  + +
  MMETSP1174-20130828|15292_1 211 MDALNLFMSDKDFPEDLKRRLRMYASKSKALAKNARHQLLVDKLSPALKAEVLD 264
                  4455666777888899*************************9999999988765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 5e-05
    TIGR02865 413 eleeilklykineklkkrleesrelvaeqlkgvaevleelakeikkelkfkekl 466
                    ee++++++  +k  ++++e  +l ++q+ ++ + +e +++++++ ++ +++ 
  MMETSP1174-20130828|15292_1 419 LQEEMINQHHNLTKPSEKVKEMAQLQGKQIANIEKTIETISEKLDRLISMDDEX 472
                  4567788888888999****************************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.55
# Mc/sec: 1207.10
//
Query:       MMETSP1174-20130828|15302_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|15305_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1174-20130828|15306_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 445.46
//
Query:       MMETSP1174-20130828|15308_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 780.94
//
Query:       MMETSP1174-20130828|15309_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 213.21
//
Query:       MMETSP1174-20130828|15310_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 619.33
//
Query:       MMETSP1174-20130828|15311_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|15315_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 147.99
//
Query:       MMETSP1174-20130828|15316_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.70
# Mc/sec: 101.82
//
Query:       MMETSP1174-20130828|15318_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 536.04
//
Query:       MMETSP1174-20130828|15319_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 856.04
//
Query:       MMETSP1174-20130828|15322_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|15326_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|15327_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|15330_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-53  180.1   0.0    2.5e-39  133.4   0.0    2.0  2  TIGR00006 TIGR00006: S-adenosyl-methyltransferase MraW


Domain annotation for each model (and alignments):
>> TIGR00006  TIGR00006: S-adenosyl-methyltransferase MraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   5.1e-16   2.1e-12      99     135 ..       2      38 ..       1      50 [. 0.88
   2 !  133.4   0.0   6.2e-43   2.5e-39     135     309 ..      62     232 ..      55     233 .. 0.92

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 5.1e-16
    TIGR00006  99 llDLGvSspqldeaerGFsfkkdgplDmRmdqsqkls 135
                  llDLGvSs+q+d++ rGFs+ ++gplDmRm  s+  s
  MMETSP1174-20130828|15330_1   2 LLDLGVSSHQIDTQSRGFSYLRSGPLDMRMGGSSADS 38 
                  89****************************9886555 PP

  == domain 2    score: 133.4 bits;  conditional E-value: 6.2e-43
    TIGR00006 135 sAaevlnelseedlekilkkygeekfskriakaivearkkkklkttkelaeviskavpakekvkkihpatkvFQaiRiavNdEleeleealesalellkkggrlsvisFHSlEdrivknffkelsklvqv.PeglpvkeeelkklklitkKpilpseeEikeNprsRSakLrvaek 309
                   Aa++ln+l e+++++ilk+ygee  +k ia+ ive    +++ tt++l ++i+++vp+    +  +  ++vFQa+R+avNdEl  le +l+ a+++ ++ggrl v+s+HSlEdr vk+++++ s      P+   v  + +   k +   p  p++eE+ +N rsRSa Lr ae+
  MMETSP1174-20130828|15330_1  62 GAAHMLNHLAEHEIQTILKTYGEEPRAKAIARSIVE---MRPMVTTSDLLNAIAACVPSGPVLR--KATARVFQALRVAVNDELGALEAILTAARQIVRPGGRLVVLSYHSLEDRRVKRVMRSGSIHSASgPPRDAVFGNVMAPWKPLKSVPSKPTKEEVVANSRSRSAHLRAAER 232
                  699*********************************...78****************9988777..7899*****************************************************997666558887787777777789999999********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1004.82
//
Query:       MMETSP1174-20130828|15334_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.6   0.2      0.033   11.7   0.1    1.5  1  TIGR02586 cas_devS: CRISPR-associated protein Cas5/DevS, subtype MYXAN


Domain annotation for each model (and alignments):
>> TIGR02586  cas_devS: CRISPR-associated protein Cas5/DevS, subtype MYXAN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.9e-06     0.033      11      46 ..      34      69 ..      29      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.9e-06
    TIGR02586 11 vfRkfrareyretatllpPstayGllLsLvGiemre 46
                 ++R ++    r  + +++Ps +y ++L L+Gi +r+
  MMETSP1174-20130828|15334_1 34 AMRVYTQVPTRVPTQVPTPSQLYTAVLALTGITQRH 69
                 5677777767777789****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 498.26
//
Query:       MMETSP1174-20130828|15336_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.50
# Mc/sec: 203.26
//
Query:       MMETSP1174-20130828|15342_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 249.04
//
Query:       MMETSP1174-20130828|15347_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   21.6   0.0    4.5e-05   21.1   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-08   4.5e-05       4      66 ..      19      82 ..      17      83 .] 0.82

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-08
    TIGR00231  4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...ykvnllDTaGqedf 66
                 +++++vG++ +GKstLl +l   k  +t   p+v+  + +  +  d+     + v+++D++G++ f
  MMETSP1174-20130828|15347_1 19 VRVLLVGDSFAGKSTLLFRLEHGK-EQTGMLPTVGSGVGSI-ECPDPLGesiFFVEIWDIGGHDTF 82
                 689*********************.7888889999999984.3333322557899*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.68
# Mc/sec: 161.10
//
Query:       MMETSP1174-20130828|15352_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|15354_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 720.44
//
Query:       MMETSP1174-20130828|15357_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.96
# Mc/sec: 372.59
//
Query:       MMETSP1174-20130828|15360_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 253.28
//
Query:       MMETSP1174-20130828|15363_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.71
# Mc/sec: 76.22
//
Query:       MMETSP1174-20130828|15364_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|15366_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|15367_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-69  230.8   0.1    2.3e-69  230.6   0.1    1.0  1  TIGR00038 efp: translation elongation factor P
    3.3e-32  110.0   0.2    3.8e-32  109.8   0.1    1.1  1  TIGR02178 yeiP: elongation factor P-like protein YeiP
  ------ inclusion threshold ------
      0.018   12.7   0.0      0.026   12.2   0.0    1.3  1  TIGR00037 eIF_5A: translation initiation factor eIF-5A


Domain annotation for each model (and alignments):
>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.6   0.1   1.7e-72   2.3e-69       2     184 .]      46     229 .]      45     229 .] 0.98

  Alignments for each domain:
  == domain 1    score: 230.6 bits;  conditional E-value: 1.7e-72
    TIGR00038   2 sandlrkGlvieldgelyvvlefehvkpGkgqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdketyeqievekealgdaakfLkenmevevvlyegepisvelpnkvelevtetepgvkgdtassst.KpatletGaevqVPlFieegekikvdtrtgeYveRa 184
                  s+ d+++Gl+i   g++++++ef hvkpGkg+afvr+klknl tg+  ekt+++ge+ve+a++e+  +qy+Yk+++sy fm +et+e +++e + +g +  f+ke+m+v+v  ++g++i+velp++ve+evtet+pg+kgdta+++  Kpat+e+Ga++qVPlF+++g+ ikv+t++g+Y +Ra
  MMETSP1174-20130828|15367_1  46 STADFKNGLTIVEGGQPVKIIEFLHVKPGKGSAFVRTKLKNLITGRSNEKTWRAGESVEAADMERDVLQYSYKEDSSYFFMSMETFETVQIEDAVVGSNGLFIKEGMDVNVLKFDGKIIDVELPKSVEYEVTETDPGLKGDTAKGGGtKPATIESGAVIQVPLFVNQGDSIKVNTQDGSYTSRA 229
                  789********************************************************************************************************************************************87644**********************************96 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.1   2.8e-35   3.8e-32       4     186 .]      49     229 .]      46     229 .] 0.90

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 2.8e-35
    TIGR02178   4 elkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldeedytlytlkkdeiedellfiseglsgmsvllvdgeavalelPqsveleivetaPeikGasask.rtkPaklstGlvvqvPeyiatGerilinteerkfmgra 186
                  ++k Gl +   g+ ++i +     P+ + g+   + +l+++ tG   e+ ++a + +++ ++ r  +++sy++   y f+  e +   +++   ++ + lfi eg+ +++vl +dg+ + +elP+sve e+ et+P++kG +a    tkPa++ +G v+qvP ++  G+ i++nt+++ +++ra
  MMETSP1174-20130828|15367_1  49 DFKNGLTIVEGGQPVKIIEFLHVKPG-K-GSAFVRTKLKNLITGRSNEKTWRAGESVEAADMERDVLQYSYKEDSSYFFMSMETFETVQIEDAVVGSNGLFIKEGM-DVNVLKFDGKIIDVELPKSVEYEVTETDPGLKGDTAKGgGTKPATIESGAVIQVPLFVNQGDSIKVNTQDGSYTSRA 229
                  56777777777766665555444453.3.5567789999******************************************************************9.79*********************************975279*********************************998 PP

>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05     0.026      12     102 ..      50     139 ..      41     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
    TIGR00037  12 LrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaidggvvqlmdleteetlevkiP 102
                  +++g  +v  g+p ki++    kpGk G+a +r +  ++ +++  e    + + ve   ++r   q    ++    +m +et et +++  
  MMETSP1174-20130828|15367_1  50 FKNGLTIVEGGQPVKIIEFLHVKPGK-GSAFVRTKLKNLITGRSNEKTWRAGESVEAADMERDVLQYSYKEDSSYFFMSMETFETVQIEDA 139
                  555666666789*************9.9****************************************99**************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 530.27
//
Query:       MMETSP1174-20130828|15370_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.4   0.2       0.12   10.6   0.0    2.2  2  TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain


Domain annotation for each model (and alignments):
>> TIGR03798  ocin_TIGR03798: nif11-like leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.068   2.8e+02      25      49 ..      95     117 ..      89     133 .. 0.65
   2 ?   10.6   0.0   2.8e-05      0.12      18      53 ..     209     245 ..     207     255 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.068
    TIGR03798  25 aaespedrvaiakeaGFefteedle 49 
                  a+e+   +va++k aG +   +dl+
  MMETSP1174-20130828|15370_1  95 AFECYRGIVAALKTAGLSP--DDLK 117
                  4566677888888888544..4443 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.8e-05
    TIGR03798  18 dLreklkaaespedrv.aiakeaGFefteedleeaqa 53 
                  +++e+ ++a++ +d+v ++++eaG e+t +dl  a+a
  MMETSP1174-20130828|15370_1 209 TMAEQYRTAQEAADLVdRALEEAGVECTYQDLSLAKA 245
                  6999*****99999885789************88866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1013.21
//
Query:       MMETSP1174-20130828|15378_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   16.7   0.0     0.0012   16.0   0.0    1.3  1  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     3e-07    0.0012     123     230 ..      10     125 ..       2     132 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3e-07
    TIGR00046 123 kKlerwqkivieaaeQsgrnivpe..ikavknlk.......eklaeaeeealklnlhleasalsknleieakkiviiiGPEGGfsekEiqllkekgfkevsLgkriLRteTAvvaal 230
                  k ++  ++i  ea+     n +p+  + +++n +          + +eee++ l + ++ + +  ++++  k+++ + G  GG+se E + l+ ++++ vs   +  R++ A+va++
  MMETSP1174-20130828|15378_1  10 KRRKSVKRINAEALSYADTNSLPKgvLSIYQNRFdtnafeaRVKVGEEEETMRLAFPEQYPFKGPEVSFMGKTMRFVSGTGGGLSETELHALELQDIYLVSWT-PAQRAVDAIVASM 125
                  455667777777777777777777545555544446666542234567779999999999***************************************9988.6678888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 751.60
//
Query:       MMETSP1174-20130828|15377_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-80  266.3   0.0    8.3e-80  266.1   0.0    1.0  1  TIGR02152 D_ribokin_bact: ribokinase
    2.1e-32  110.2   0.0    4.4e-32  109.1   0.0    1.4  2  TIGR03828 pfkB: 1-phosphofructokinase
    2.4e-32  109.9   0.1    3.9e-32  109.2   0.1    1.4  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    6.5e-21   72.6   0.7      1e-15   55.5   0.0    2.2  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
    1.9e-06   25.2   0.0    2.9e-06   24.6   0.0    1.1  1  TIGR01231 lacC: tagatose-6-phosphate kinase
    3.6e-06   24.3   0.0    6.3e-06   23.5   0.0    1.3  1  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
    1.3e-05   22.6   0.0    2.6e-05   21.5   0.0    1.4  1  TIGR00687 pyridox_kin: pyridoxal kinase


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0   1.4e-82   8.3e-80       1     297 [.      41     338 ..      41     339 .. 0.96

  Alignments for each domain:
  == domain 1    score: 266.1 bits;  conditional E-value: 1.4e-82
    TIGR02152   1 ivvvGSinvDlvlrvkrlpkpGetvkaeefkiaaGGKGANQAvaaarlgaevsmigkvGkDefgeellenlkkegidteyvkkvkktstGvAlilvdeegeNsIvvvaGaneeltpedvkaaeekikesdlvllQlEipletveealkiakkagvkvllnPAPaekkldeellslvdiivpNetEaeiLtgievedledaekaaekllekgvkaviitlGskGallvskd.ekklipalkv.kavDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGaqssiPtkeeve 297
                  i+vvGS+n+D+v++v+rlp +Get++++   + +GGKGANQAvaa+++g +vs+ g  G+D++g +l+e++++ g++ e  + ++k ++G+A+il++ +g NsIv+v Gan ++ ++  ++  ++i++++ v+lQ Eip+  +  +++ ak+ gv+v+++    ++ l++ ll+ + +++pNetE+ iLtg+ +++ e++++aa +l+  gv++v++tlG++Ga+l  +d +    p l v k+vDtt+AGD+F ga++vaL+eg+++e+a+ f++aa+++ V+r+Ga  s+P+++e+e
  MMETSP1174-20130828|15377_1  41 ILVVGSVNADTVINVQRLPLQGETLQGSGGMVLPGGKGANQAVAASQMGGMVSFAGVFGTDAHGGMLRETMTTAGVNLELSR-SSKGPSGQAIILLETDGMNSIVIVPGANVDWPEDLPEELVHAIETTSSVMLQREIPEYINLLVAQRAKACGVDVFMDVGGDDTPLSDALLACISYCCPNETELRILTGMPTDTPEQIRSAALHLQGLGVNRVLVTLGKDGAMLFLEDgSIVERPILPVsKVVDTTGAGDCFRGAFVVALSEGRTAEEALLFGTAASSVCVQRMGAMGSMPARKELE 338
                  89***************************************************************************98755.778999***************************************************************************************************************************************988877555556666664689****************************************************87 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.65   3.8e+02      18      41 ..      20      43 ..      17      57 .. 0.71
   2 !  109.1   0.0   7.5e-35   4.4e-32      11     293 ..      50     332 ..      44     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.65
    TIGR03828 18 elelgevnrveserldagGKGinV 41
                 ++e+  + r+++ + d g KGi V
  MMETSP1174-20130828|15377_1 20 SYEMSMTTRLNTHMADSGKKGILV 43
                 556666777777777777777766 PP

  == domain 2    score: 109.1 bits;  conditional E-value: 7.5e-35
    TIGR03828  11 Dktieleelel.gevnrveserldagGKGinVarvLkklgvevvalgflGgf.tgeeiealleeegiktdfvevk.getRinvkikessgeetklnepGpeis..eeeleallekleeqlkegdvlvlaGSlPrgvpedlyaelikllrekgakvilDtsg..eaLlkvlkakplliKPNkeEleellgrelkteeevieaarkllekgvenvlislGadGallvtkegalfaka..pkievkstvGAGDsmvAgfllalekglsleealrlavAvgaaaassegtelpdle 293
                  D++i++++l l ge+   +  ++ +gGKG n a + +++g  v   g++G + +g  +++++++ g++ +  + + g + + + + e++g  + +  pG++++  e+  e+l++++e    +++ ++    l r +pe +   +++++++ g+ v +D+ g   +L+++l a    + PN+ El  l+g+  +t e++ +aa +l+  gv++vl++lG+dGa+l+ ++g++++++  p  +v++t+GAGD   ++f++al++g ++eeal +++A+++  ++++g +++++ 
  MMETSP1174-20130828|15377_1  50 DTVINVQRLPLqGETLQGSGGMVLPGGKGANQAVAASQMGGMVSFAGVFGTDaHGGMLRETMTTAGVNLELSRSSkGPSGQAIILLETDGMNSIVIVPGANVDwpEDLPEELVHAIE----TTSSVM----LQREIPEYINLLVAQRAKACGVDVFMDVGGddTPLSDALLACISYCCPNETELRILTGMPTDTPEQIRSAALHLQGLGVNRVLVTLGKDGAMLFLEDGSIVERPilPVSKVVDTTGAGDCFRGAFVVALSEGRTAEEALLFGTAASSVCVQRMG-AMGSMP 332
                  999*****9999***********************************99986267899**********999876449*************************953334455555555....666665....67888999999999*************9762269**********************************************************************98999*******************************************99.555444 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.1   6.7e-35   3.9e-32      11     290 ..      50     329 ..      41     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 109.2 bits;  conditional E-value: 6.7e-35
    TIGR03168  11 Dktveveele.lgevnrvesvekdagGKGinVarvlkelgaevvalgflGgf.tgefiealleeegikadfvev.kgetRinvkikessgeetelnepGpeiseeeleallekleellkkgdvvvlsGSlPrgvpedfyaelielakekgakvilDtsge..aLrealkakplliKPNkeEleelvgrelkteeevieaarellekGvenvlvSlGadGallvtkegalkaea..pkvevvstvGAGDsmvAgfllalekglsleealrlavAagsaaassegtelp 290
                  D++++v++l  +ge+   +   + +gGKG n a + +++g  v   g++G +  g  +++++++ g++ +  +  kg + + + + e++g    +  pG++++ +e   l e+l +++++++ v+    l r +pe +   ++++ak+ g+ v +D+ g+  +L++al a ++ + PN+ El  l+g++ +t e++ +aa +l+  Gv++vlv+lG+dGa+l+ ++g +  ++  p  +vv+t+GAGD + ++f++al++g  +eeal +++Aa+s  +++ g +++
  MMETSP1174-20130828|15377_1  50 DTVINVQRLPlQGETLQGSGGMVLPGGKGANQAVAASQMGGMVSFAGVFGTDaHGGMLRETMTTAGVNLELSRSsKGPSGQAIILLETDGMNSIVIVPGANVDWPE--DLPEELVHAIETTSSVM----LQREIPEYINLLVAQRAKACGVDVFMDVGGDdtPLSDALLACISYCCPNETELRILTGMPTDTPEQIRSAALHLQGLGVNRVLVTLGKDGAMLFLEDGSIVERPilPVSKVVDTTGAGDCFRGAFVVALSEGRTAEEALLFGTAASSVCVQRMG-AMG 329
                  888888887525788888899999***********************9997626899************99876269999999999****************9765..56666666666677776....6799999999999***************764339***************************************************************9776554337778****************************************9999.444 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.9e-06    0.0017      43      94 ..      70     121 ..      32     130 .. 0.71
   2 !   55.5   0.0   1.7e-18     1e-15     190     303 ..     214     328 ..     177     341 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.9e-06
    TIGR02198  43 eeerlGG.AaNvakNlasLgaevvlvgvvGkDeagkaleellkeegietsell 94 
                      +GG +aN a   +++g+ v+++gv G+D +g  l+e+++++g++  el 
  MMETSP1174-20130828|15377_1  70 GMVLPGGkGANQAVAASQMGGMVSFAGVFGTDAHGGMLRETMTTAGVN-LELS 121
                  4445555389************************************99.5554 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 1.7e-18
    TIGR02198 190 gatlltPNrkEleeavg.aveeeeelvkaaeklleeleleallvTrsekGmtllekekevlhlpaaak.evyDVtGAGDtViavlalalaagasleeaaelaNaaagvvvgklGta 303
                    +   PN++El+ ++g  +++ e++ +aa +l+  l ++ +lvT +++G +l+ +++++++ p     +v+D tGAGD   +++ +al++g + eea+ ++ aa++v v+++G+ 
  MMETSP1174-20130828|15377_1 214 CISYCCPNETELRILTGmPTDTPEQIRSAALHLQ-GLGVNRVLVTLGKDGAMLFLEDGSIVERPILPVsKVVDTTGAGDCFRGAFVVALSEGRTAEEALLFGTAASSVCVQRMGAM 328
                  456678***********88899999999888875.799**************************998669********************************************86 PP

>> TIGR01231  lacC: tagatose-6-phosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.9e-09   2.9e-06      35     272 ..      74     309 ..      68     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.9e-09
    TIGR01231  35 aggkglnvtrvlaqvgdkvlasgllggk.lgefiekeldksaikhafykis.getrnciail.hegqqteileqgpeisakeakgfleffekllkkvevvaisgslpkglpqdyyeklielakdkgvavvldcsga..aletvlesaakptvikpnteelsqllekevtedveelkdalkeplfsgiewiivslgaqga..fakhgdtfykvdipkiavvnpvgsgdstvagitsalaakksded 272
                  +ggkg n +   +q+g  v  +g++g +  g ++ + +  + ++  + + s g + + i +l  +g ++ ++  g +++  e     +  e+l++ +e+ + s  l + +p+     + ++ak  gv v +d  g   +l + l +    +   pn  el  l + +  +  e++++a  +    g++ ++v+lg++ga  f   g++  +  +p   vv+  g+gd        al+++++ e+
  MMETSP1174-20130828|15377_1  74 PGGKGANQAVAASQMGGMVSFAGVFGTDaHGGMLRETMTTAGVNLELSRSSkGPSGQAIILLeTDGMNSIVIVPGANVDWPE-----DLPEELVHAIET-TSSVMLQREIPEYINLLVAQRAKACGVDVFMDVGGDdtPLSDALLACI--SYCCPNETELRILTGMPT-DTPEQIRSAALHLQGLGVNRVLVTLGKDGAmlFLEDGSIVERPILPVSKVVDTTGAGDCFRGAFVVALSEGRTAEE 309
                  8*************************8735999**********999887651666666666625788889999999999988.....456888888886.457788888887555666789************997225666665544..5678******98877775.5568888888777888*************966789999********************999999999988766554 PP

>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.1e-08   6.3e-06     120     233 ..     207     317 ..     204     331 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.1e-08
    TIGR00097 120 lkkkllplatlvtPNlpEaeallgvkikteedlkkaakklaelgakavlikGGhledeeavdvlydeeeve.ilkaerietkntHGtGctlsaaiaaelakglelkeavkeakef 233
                  l ++ll   +   PN +E  +l+g+  +t e++++aa +l+ lg++ vl++ G+      + ++++++++      +  +  +t G+G+ +  a +  l +g   +ea+  + + 
  MMETSP1174-20130828|15377_1 207 LSDALLACISYCCPNETELRILTGMPTDTPEQIRSAALHLQGLGVNRVLVTLGKDG----AMLFLEDGSIVeRPILPVSKVVDTTGAGDCFRGAFVVALSEGRTAEEALLFGTAA 317
                  667888889999**************************************988654....3444444443323334444556899*********************998766655 PP

>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.5e-08   2.6e-05     144     260 ..     219     327 ..     209     339 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 4.5e-08
    TIGR00687 144 tPnlfelelLterkvetleealaaadaLiakGpkivlvkhLvragksrdrsieilvvtaegaweiskpllqfdrepvGvGDliaalllakllrgkslkealekvvsalyevlkttie 260
                   Pn  el++Lt+ + +t e++  aa  L+  G++ vlv+ L + g+      ++++v ++  + +sk+      +  G GD + + +++ l +g++++eal   ++a    +++  +
  MMETSP1174-20130828|15377_1 219 CPNETELRILTGMPTDTPEQIRSAALHLQGLGVNRVLVT-LGKDGAMLFL-EDGSIV-ERPILPVSKVV-----DTTGAGDCFRGAFVVALSEGRTAEEALLFGTAASSVCVQRMGA 327
                  7************************************97.6666665544.344444.45556666654.....557***********************98877776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.66
# Mc/sec: 687.94
//
Query:       MMETSP1174-20130828|15383_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|15384_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1174-20130828|15388_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-14   48.4   4.6    8.9e-14   48.1   3.2    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.3e-10   36.6   7.5    3.6e-09   34.3   0.4    2.6  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.2e-09   33.9   4.2    2.6e-09   33.7   2.9    1.2  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    3.3e-07   27.9   1.3    0.00012   19.7   0.2    2.2  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0042   15.5   0.6        1.3    7.5   0.0    2.7  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
        1.3    6.7   6.8       0.18    9.5   1.1    2.3  2  TIGR02996 rpt_mate_G_obs: repeat-companion domain TIGR02996


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   3.2   1.3e-16   8.9e-14     546     687 ..      41     182 ..       5     205 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 1.3e-16
    TIGR02917 546 kgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrlee 687
                   g++  a+a + +a+e  p e +p+++L++ + + g++k a+a+l+ea +l p s+e +  lg+a+   +d+++a ++++ +l+l pd  ++ l   +v a   ++a+Al ++k aL ++p    a +    L  + kr +e
  MMETSP1174-20130828|15388_1  41 AGDSTGAIASYREAVEDAPLEAAPRVNLGAELARAGQAKEAVAVLREATELDPTSAEGFHNLGQALHGCGDHAEAAAAYRAALALTPDDTASRLAYGAVLADSGDVAGALSEAKDALRRDPASELASRCVRALVTDLKRANE 182
                  488899999*****************************************************************************************************************99999988888887777665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.083        57      46      96 ..       6      59 ..       2      63 .. 0.70
   2 !   34.3   0.4   5.3e-12   3.6e-09      30     112 ..      61     143 ..      33     146 .. 0.88
   3 !    6.3   0.2     0.002       1.4      44      98 ..     143     197 ..     140     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.083
    TIGR02521 46 dlekAkenlekAleldpk.dada..nlalAlyyqqlgelekAeesfrkAltlkp 96
                 dl++A  +l  A++ ++    +a     l +++   g+ + A +s+r+A++ +p
  MMETSP1174-20130828|15388_1  6 DLDEALISLHRAVAEAKTpATRAelSFTLSIALSVAGDSTGAIASYREAVEDAP 59
                 778888889999876554133340045678888899999999999999997665 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 5.3e-12
    TIGR02521  30 aakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqq 112
                   a+ rv+L++e  ++g++++A + l +A eldp +a+  + l+ ++   g++ +A++++r Al+l+p++++ +  YG+ L   
  MMETSP1174-20130828|15388_1  61 EAAPRVNLGAELARAGQAKEAVAVLREATELDPTSAEGFHNLGQALHGCGDHAEAAAAYRAALALTPDDTASRLAYGAVLADS 143
                  4788************************************************************************9988665 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.002
    TIGR02521  44 qgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnn 98 
                  +gd++ A  + ++Al  dp+++ a      +  +l++ ++ ++  +k+ ++++++
  MMETSP1174-20130828|15388_1 143 SGDVAGALSEAKDALRRDPASELASRCVRALVTDLKRANERQAPHEKGHQQQQQQ 197
                  7999********************9988888888888777777777777766655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   2.9   3.8e-12   2.6e-09      65     206 ..      40     182 ..       6     230 .. 0.56

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 3.8e-12
    TIGR03939  65 Wagedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveilt.rlgapal 206
                   ag++  +i+ y+++ + ++l a    +l+  + +++q ++A+++ r++++ dP+++++   l  +l + g+++eA +a +++ + +p+d + + a + vl+ ++d ++al+ +++alr++P + el+ + v++l+ +l+ +  
  MMETSP1174-20130828|15388_1  40 VAGDSTGAIASYREAvEDAPLEAAPRVNLGAELARAGQAKEAVAVLREATELDPTSAEGFHNLGQALHGCGDHAEAAAAYRAALALTPDDTASRLAYGAVLADSGDVAGALSEAKDALRRDPAS-ELASRCVRALVtDLKRANE 182
                  4555555555555555555554444444444444445555555555555555555555555555555555555555555555555555555555555555555555555555555555555555.4555555555555555444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00028      0.19      53     119 ..      29      95 ..      23      99 .. 0.90
   2 !   19.7   0.2   1.7e-07   0.00012      47     120 ..      91     164 ..      89     174 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00028
    TIGR02552  53 kywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                  +  + L+ +l  +++ ++Aia Y  a+   + +++p + ++  l   g+ +eA + L+ a e++  +
  MMETSP1174-20130828|15388_1  29 ELSFTLSIALSVAGDSTGAIASYREAVEDAPLEAAPRVNLGAELARAGQAKEAVAVLREATELDPTS 95 
                  5567788888999***********************************************9998765 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.7e-07
    TIGR02552  47 ldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  ldpt+a+ +  L+ +l+ +++++eA+aaY +a+al++dd +  ++ + +l   g+ + Al+  k a++++ ++e
  MMETSP1174-20130828|15388_1  91 LDPTSAEGFHNLGQALHGCGDHAEAAAAYRAALALTPDDTASRLAYGAVLADSGDVAGALSEAKDALRRDPASE 164
                  68999999999*****************************************9999999998888888777665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0019       1.3      42     107 ..      31      93 ..      24      99 .. 0.80
   2 !    7.2   0.2    0.0024       1.6      50     115 ..      73     135 ..      68     139 .. 0.73
   3 !    5.5   0.1    0.0077       5.2      44      74 ..     101     131 ..      92     167 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0019
    TIGR02795  42 qYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYP 107
                  ++ l  al  +++ + A+++++e+v++ p  e ap   ++lg  l++ gq+++A ++l+e  +  P
  MMETSP1174-20130828|15388_1  31 SFTLSIALSVAGDSTGAIASYREAVEDAPL-EAAP--RVNLGAELARAGQAKEAVAVLREATELDP 93 
                  567777889999*************96654.3455..5899*****************99776555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0024
    TIGR02795  50 yakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakla 115
                   ++++ k+A +  +e+++    ++ +++   +lg++l   g++++A + ++   +  P+ +a++la
  MMETSP1174-20130828|15388_1  73 ARAGQAKEAVAVLREATEL---DPTSAEGFHNLGQALHGCGDHAEAAAAYRAALALTPDDTASRLA 135
                  5555556666666555554...45567888899999999999999999999999988888888876 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0077
    TIGR02795  44 wlGealyakkkykdAakaflevvkkypksek 74 
                   lG+al   ++ ++Aa+a++++++  p+++ 
  MMETSP1174-20130828|15388_1 101 NLGQALHGCGDHAEAAAAYRAALALTPDDTA 131
                  4677777777777777777777766555433 PP

>> TIGR02996  rpt_mate_G_obs: repeat-companion domain TIGR02996
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00026      0.18       3      32 ..     117     146 ..     115     153 .. 0.86
   2 ?   -2.0   0.2      0.98   6.7e+02      28      39 ..     194     205 ..     192     206 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00026
    TIGR02996   3 aaLlraIlaaPdddTpRLvYADWLdEhgdp 32 
                  aa  +a++  Pdd   RL+Y   L + gd 
  MMETSP1174-20130828|15388_1 117 AAYRAALALTPDDTASRLAYGAVLADSGDV 146
                  677899**************9888888886 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.98
    TIGR02996  28 EhgdperAeFiR 39 
                  +++++ rA++ R
  MMETSP1174-20130828|15388_1 194 QQQQQHRARLER 205
                  566666999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|15393_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|15397_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 234.35
//
Query:       MMETSP1174-20130828|15400_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 180.28
//
Query:       MMETSP1174-20130828|15401_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|15403_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 200.26
//
Query:       MMETSP1174-20130828|15408_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.46
# Mc/sec: 200.85
//
Query:       MMETSP1174-20130828|15409_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 279.98
//
Query:       MMETSP1174-20130828|15411_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.55
# Mc/sec: 175.19
//
Query:       MMETSP1174-20130828|15412_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 280.07
//
Query:       MMETSP1174-20130828|15414_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|15417_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.67
# Mc/sec: 382.18
//
Query:       MMETSP1174-20130828|15419_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|15421_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1174-20130828|15420_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 871.93
//
Query:       MMETSP1174-20130828|15425_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|15424_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|15426_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.63
# Mc/sec: 123.61
//
Query:       MMETSP1174-20130828|15434_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 1820.91
//
Query:       MMETSP1174-20130828|15439_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 586.62
//
Query:       MMETSP1174-20130828|15441_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.4   0.6       0.02   12.3   0.4    1.0  1  TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase


Domain annotation for each model (and alignments):
>> TIGR01704  MTA/SAH-Nsdase: MTA/SAH nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   4.8e-06      0.02     133     191 ..      22      82 ..       5      89 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-06
    TIGR01704 133 aeldliqvvkglivsgdafindskrl..ekvrarfsdliavemeaaavaqvchqfkvpfvv 191
                  ++++ ++ +k  +v g  ++++sk++   k+++   ++  veme + +a+   +++  +vv
  MMETSP1174-20130828|15441_1  22 SKMEKVEEMKDSMVEGINIMENSKKMvaRKMKNMVKEVEKVEMEQTIMAEEMENIEKMIVV 82 
                  678899999***********99988633478888999*************99999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       933  (0.22745); expected 82.0 (0.02)
Passed bias filter:                      272  (0.0663091); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 289.73
//
Query:       MMETSP1174-20130828|15453_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|15454_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|15455_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 500.46
//
Query:       MMETSP1174-20130828|15458_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 899.61
//
Query:       MMETSP1174-20130828|15457_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-26   89.2  11.3    9.2e-26   88.9   7.8    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    0.00018   19.1  13.1    0.00018   19.1   9.1    2.1  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   7.8   4.5e-29   9.2e-26       3     297 ..      29     319 ..      25     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 4.5e-29
    TIGR00817   3 tgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllells.....wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                  + +l llwy   +y+   + +l     +    +lv++ + ++  ++       s +  +rl +  a l ++  +ai    g v+ n +l +++vS++ +++alep+  ++ls  +lg++  l    +L+ i  G al + +++ f  lg+l  + +n++f    if+Kk+ +++ +d+ n++   s l+  l + + +++  +++    ++       v  + + +l++    f +y+q a+ +l+rvs++ty v   +++ +v    ++ f++++s+l ++G++l+ +G   Y   k+ 
  MMETSP1174-20130828|15457_1  29 LAFLVLLWYTTSIYYTNTTRSLSMHWGVM---ALVQVIIASICSIITipafnLSPGRRIRLLPTRAALRTTGALAISFGAGFVFLNAALCMMHVSLVMVLRALEPLSMAALSLSLLGESTSLRAGGALVSICTGSALSAAESADFTGLGLLVTFCANLSFSLCAIFAKKLKQEHGVDDYNIFLQCSTLSAPLFLAMLLVLRAMNV---DLMLP---AAVEGFKSGVLILNGISFFVYNQFAWIVLGRVSAVTYTVMAAVRKTFVCICGVIQFGNPVSPLSAFGIGLTSIGSLFYADAKRV 319
                  45566789999999994445555444444...4555555555554444334477788899*********************************************************999999999********************************************************99995544333333333333332...33333...3455566667777777899********************9999999998899**************************988875 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2     0.033        68     179     203 ..      47      77 ..      17      82 .. 0.58
   2 !   19.1   9.1   8.9e-08   0.00018      33     222 .]     128     313 ..     100     313 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.033
    TIGR00803 179 t.....tksivlalsiilsllls.vrlfdak 203
                  t       +++++++ i+ ++ s + ++ ++
  MMETSP1174-20130828|15457_1  47 TrslsmHWGVMALVQVIIASICSiITIPAFN 77 
                  2433445567777777777777755555555 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.9e-08
    TIGR00803  33 lkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssaktlsegnlvvglsavlsallssglag.vyfekilkdkdtsfyvrnlqlplfgllvt.fvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvk.yadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  l+ ls a ++l++l  s + ++  +l ++++g a   ++++    +   +l+v + a ls  l++++a+ + +e +  d+++ +    l+ plf+ +++ ++ + +  +   +  gf+ g+     i+   + + +   +++v    + +t+ +++a+++ ++ + +v+ f++++s ++a+g+ l  ++ l Y
  MMETSP1174-20130828|15457_1 128 LEPLSMAALSLSLLGESTSLRAGGALVSICTGSALSAAESAD---FTGLGLLVTFCANLSFSLCAIFAKkLKQEHGVDDYNIFLQCSTLSAPLFLAMLLvLRAMNVDLMLPAAVEGFKSGV----LILNGISFFVYNQFAWIVLgRVSAVTYTVMAAVRKTFVCICGVIQFGNPVSPLSAFGIGLTSIGSLFY 313
                  67799*****************************99999997...44448888888888889999998626689999999999***********999843333333333334444444443....3333333333333455555144667**********************************999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1240.70
//
Query:       MMETSP1174-20130828|15459_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1896.87
//
Query:       MMETSP1174-20130828|15461_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 302.80
//
Query:       MMETSP1174-20130828|15460_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 1070.05
//
Query:       MMETSP1174-20130828|15464_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.90
# Mc/sec: 57.20
//
Query:       MMETSP1174-20130828|15465_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 294.15
//
Query:       MMETSP1174-20130828|15467_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 221.28
//
Query:       MMETSP1174-20130828|15468_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 455.13
//
Query:       MMETSP1174-20130828|15471_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.1   0.0     0.0044   14.7   0.0    1.1  1  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-06    0.0044      98     127 ..      57      86 ..      52     101 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
    TIGR02466  98 lWvvilpqggvheaHvHpgsviSgvyYvqt 127
                   W +  p+ g ++ H H  s +S+vy++  
  MMETSP1174-20130828|15471_1  57 GWLNASPPTGFNSLHDHGDSSWSAVYFIDD 86 
                  5**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1174-20130828|15470_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-63  213.0   0.0    1.6e-63  212.6   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      2e-47  159.2   0.0    2.4e-47  159.0   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.5e-34  117.7   0.0    1.9e-34  117.3   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.5e-32  109.0   0.1      2e-31  106.8   0.0    1.7  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.5e-31  106.2   0.0    4.4e-31  105.9   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.2e-29  100.4   0.0    3.1e-29   99.9   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.7e-27   92.2   0.7    6.9e-26   88.7   0.5    1.9  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      1e-25   88.1   0.0    3.6e-25   86.3   0.0    1.7  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      1e-25   87.9   0.3    8.3e-25   84.9   0.2    1.9  1  TIGR00958 3a01208: antigen peptide transporter 2
    6.7e-24   82.0   0.0    8.8e-24   81.6   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    8.9e-24   82.2   0.6    1.2e-15   55.5   0.0    2.7  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.2e-23   79.8   0.0    2.2e-22   77.4   0.0    1.8  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.4e-23   79.6   0.4    3.5e-20   70.4   0.3    2.9  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.5e-22   75.9   0.0    1.9e-21   74.1   0.0    1.6  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    6.1e-22   76.0   0.1    4.2e-14   50.2   0.0    2.0  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      3e-20   70.5   0.2    3.2e-12   44.2   0.0    2.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    6.3e-19   66.3   0.8    4.9e-17   60.1   0.5    2.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.7e-18   64.7   0.3    1.7e-09   35.3   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.9e-18   64.1   0.2      8e-12   42.2   0.0    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.3e-18   64.5   0.0    1.8e-09   35.4   0.0    2.1  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.6e-18   63.5   0.0    4.7e-13   46.8   0.0    2.1  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.9e-18   63.8   0.1    3.2e-17   60.8   0.1    1.9  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    8.5e-18   62.4   0.1    1.5e-10   38.7   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.7e-17   61.8   0.0    6.3e-08   30.4   0.0    2.0  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.7e-17   58.7   0.2    1.4e-16   57.7   0.1    1.4  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.6e-17   59.5   0.4    4.6e-09   34.0   0.0    2.1  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    8.4e-17   59.2   0.1    1.3e-08   32.4   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.7e-16   58.0   2.3      3e-15   54.0   1.6    2.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.1e-16   57.8   0.0    5.5e-11   40.0   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.7e-16   56.8   0.9    3.6e-10   37.4   0.0    2.3  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      1e-15   55.8   0.4    2.9e-09   34.7   0.0    2.1  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.9e-15   54.9   0.1      8e-15   52.8   0.1    1.8  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.3e-15   54.6   0.0      3e-09   34.6   0.0    2.1  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.7e-15   53.8   0.0    8.4e-15   52.2   0.0    1.6  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.6e-15   53.0   0.0    1.3e-06   25.8   0.0    2.2  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      9e-15   52.5   0.7    5.2e-07   27.2   0.0    2.1  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.4e-14   51.7   0.4    1.3e-13   48.6   0.3    2.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      2e-14   51.4   0.3    6.7e-09   33.3   0.0    2.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.4e-14   50.9   0.6    6.1e-10   36.4   0.0    2.4  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      3e-14   50.9   0.3    4.4e-07   27.4   0.0    2.1  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-13   49.1   0.1    1.2e-06   26.1   0.0    2.0  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.1e-13   46.1   0.0    8.2e-13   45.5   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    9.1e-13   45.9   0.3    8.3e-08   29.7   0.0    2.1  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.4e-12   45.2   0.2    4.4e-12   43.5   0.1    1.6  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.2e-11   42.0   0.5    2.6e-09   34.4   0.0    2.0  2  TIGR01288 nodI: nodulation ABC transporter NodI
      2e-11   41.0   0.5    3.9e-06   23.6   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.5e-11   40.4   0.2    2.3e-06   23.9   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    2.5e-11   41.5   0.1      2e-05   22.2   0.0    2.1  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    6.1e-11   40.0   0.1    2.6e-05   21.6   0.1    2.1  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.7e-10   35.6   0.1    1.2e-05   20.2   0.0    1.9  2  TIGR01257 rim_protein: rim ABC transporter
    7.8e-10   35.8   0.2    2.8e-06   24.0   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
    1.1e-09   36.0   0.1    0.00029   18.3   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.2e-09   33.7   0.2    7.9e-06   22.5   0.0    2.0  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.9e-09   33.3   0.1    0.00012   18.5   0.0    2.0  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    4.9e-08   29.8   0.1     0.0026   14.2   0.0    2.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    9.3e-08   29.8   0.0     0.0006   17.4   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    0.00023   16.7   0.1      0.053    8.9   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
  ------ inclusion threshold ------
      0.017   12.2   0.4      0.024   11.7   0.3    1.2  1  TIGR01420 pilT_fam: twitching motility protein
      0.021   11.8   0.0      0.028   11.3   0.0    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
      0.026   11.6   0.1      0.039   11.0   0.1    1.2  1  TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
      0.058    9.1   0.3      0.078    8.7   0.2    1.1  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.0   2.4e-65   1.6e-63     648     844 ..      14     224 ..       8     229 .. 0.89

  Alignments for each domain:
  == domain 1    score: 212.6 bits;  conditional E-value: 2.4e-65
    TIGR00957 648 rdepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgka.......leekyykavleacalladleil....ps...gdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylp.qvd.viivlsdgkisemgs 844
                  +++ ptl+g++l+i  g+lv++ g  g gkss+l+a+l+e++k  g v++ gsvay pq aw qn++lr+nilfg +        e  +y  v++ac l  d+e l    ps   gd teigekg+ lsggq+qr++lara y+d diyllddplsavdahvak +f++ i    ll++ktr+lvth ++    ++d v+iv  dg+i e g+
  MMETSP1174-20130828|15470_1  14 QNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSAWSQNATLRDNILFGYEehtpptsNERAKYSRVVDACELADDFEQLargkPSgfkGDMTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCIC--KLLADKTRVLVTHQVALTEsRADwVVIVGGDGRILEQGP 224
                  7899***********************************************************************75222222135578***************9955544434469*****************************************************97..59*************9875257745677789****9997 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0   3.6e-49   2.4e-47     438     620 ..      16     213 ..      10     228 .. 0.89

  Alignments for each domain:
  == domain 1    score: 159.0 bits;  conditional E-value: 3.6e-49
    TIGR01271 438 vtpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifgl.......sydeyrytsvikacqleediallae.......kdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehl.kkadkilll 620
                    p l  i+l++  g l+++ g tg gkss+l  ilge++ + g ++ +g ++++pq +w    t++dni+fg        s +  +y+ v++ac+l +d+ +la         d t +ge gitlsggq+ ri+lara y d d+ylld p+s +d    k++f +c+cklla+ktr+lvt ++     +ad ++++
  MMETSP1174-20130828|15470_1  16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSAWSQNATLRDNILFGYeehtpptSNERAKYSRVVDACELADDFEQLARgkpsgfkGDMTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLLADKTRVLVTHQVALTeSRADWVVIV 213
                  5799*********************************************************************63333332567789***************998532223325999*****************************************************************9987542578877765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   2.9e-36   1.9e-34     333     526 ..      15     210 ..       7     213 .. 0.82

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 2.9e-36
    TIGR02857 333 grk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseae......vkealeragl....delvkalpqgle...teiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevl.ealrelaegrtvllvaHrlalael.adki 526
                  + + p l++++l+++pg+lv + G  G GKs++l+++lg ++ t+G+++v g+             +a+ pQ+++  ++t+++ni ++ ++ +          ++++++++l    ++l++  p+g++   teiGe+g  LSgGq+qR+aLAra + d+++ llD P +++Da+ ++++  + + +l+  +t +lv+H+ al+e  ad +
  MMETSP1174-20130828|15470_1  15 N-NgPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS-------------VAYTPQSAWSQNATLRDNILFGYEEHTPPTsnerakYSRVVDACELaddfEQLARGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFhRCICKLLADKTRVLVTHQVALTESrADWV 210
                  3.3489*********************************************99.............9*******************9987765433334445555666665510015566666766644449******************************************99887516789999***********99887415544 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.0     3e-33     2e-31     478     685 ..      15     225 ..      11     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 3e-33
    TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.........aaedeellraaela.GvtefvkkhpkGld...lqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekller.LkelladkTlvlvtHrtslLe.lvdriivl.dkGrivadGpk 685
                  ++ ++L+ ++l+i+pG+ v i G +G GKs++l  +lg ++ t Gsv + g             +++y pq ++  ++tlrdNi +g +          a+ ++++ a ela  ++++++ +p+G+    + ige+G  LSgGQ+q +alaRa + d +i+lLD+P sa+D++  ++l++r + +lladkT vlvtH+ +l e  +d ++++  +Gri+ +Gp 
  MMETSP1174-20130828|15470_1  15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG-------------SVAYTPQSAWSQNATLRDNILFGYEehtpptsneRAKYSRVVDACELAdDFEQLARGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRcICKLLADKTRVLVTHQVALTEsRADWVVIVgGDGRILEQGPP 225
                  66799******************************************9887.............68999999999999999999998653333333335667789999998735999*******996333579****************************************999988874789999*************97368988777368*******96 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   6.5e-33   4.4e-31     348     529 ..      17     199 ..       8     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 6.5e-33
    TIGR02868 348 eevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda......tdeellaaLervgLadwlraL....pdGld...tklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                   + l+g++l+++pG+ v + G +G GKs +la+++g ++   G+v + g              v++++q a   ++t+r+N++++ ++       + +  ++++ + +Lad  ++L    p+G +   t++ge+g +lSGG++qR+alARa  ad ++ lLD P   +Da+++++l +  + + ++++t vlvth+
  MMETSP1174-20130828|15470_1  17 GPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG-------------SVAYTPQSAWSQNATLRDNILFGYEEHtpptsnERAKYSRVVDACELADDFEQLargkPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCIcKLLADKTRVLVTHQ 199
                  3489******************************************999.............799*********************999677544445678999*********999333334443333999**********************************************98776*************8 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   4.6e-31   3.1e-29     350     557 ..      14     224 ..       9     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 4.6e-31
    TIGR02204 350 rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefi.sklpeGyd...tllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaes.eqlvqqaleelmkgrttlviahrLa.tvlkadrivvl.dkGriveqGt 557
                  + + ++ldg++l++rpG  v + G +G Gks +l  +l   + + G++ + G   ++  p+   ++ a    d  lf  + ++     +  a   +v +a++ a   e + +  p+G++   t++Ge+g+tLsGGq+qria+ara  +d+ i LLd+  sa+da+   +l ++ + +l +++t +++ h++a t  +ad +v++  +Gri eqG 
  MMETSP1174-20130828|15470_1  14 QNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS--VAYTPQSAWSQNATLR-DNILFGYE-EHTPPTSNERAKYSRVVDACELADDFEQLaRGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVaKNLFHRCICKLLADKTRVLVTHQVAlTESRADWVVIVgGDGRILEQGP 224
                  667899*********************************************97..5677888888888764.55667655.45556788999999*******9988665516689999755589****************************************961567899******************956678**98766369******95 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.5     1e-27   6.9e-26     327     535 ..      13     223 ..       5     228 .. 0.79

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 1e-27
    TIGR01842 327 peekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaenia.........Rfeenadaekvieaaklagvhelilr.lpkGYd...teigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalak.alkelkarkitvvvithrpsllel.vdkilvl.kdGalkafG 535
                  ++++ +tl gi++++++G+ + i G  g Gkss+   ++G ++++ Gsv++ g             s+ Y Pq     + t+ +ni            +e a+  +v++a +la+  e ++r  p+G+    teige+G +LsgGq+qRiaLaRa y d  + +LD+P + +D++  + l +  + +l a   t v++th+++l+e+ +d ++++  dG++ + G
  MMETSP1174-20130828|15470_1  13 SQNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG-------------SVAYTPQSAWSQNATLRDNILfgyeehtppTSNERAKYSRVVDACELADDFEQLARgKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLA-DKTRVLVTHQVALTESrADWVVIVgGDGRILEQG 223
                  566779*******************************************9877.............5777777777777777777752111111113445567789********99886655279988644589****************************************9988887515666655.5677899******986377776663477776665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   5.4e-27   3.6e-25     344     551 ..      15     224 ..       9     229 .. 0.78

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 5.4e-27
    TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkd....lvdklpeGld...tevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRl.vqaaLerlmkgRttlviahRLs.tiekaDrivvl.ddGkiverGt 551
                  ++ ++ld+i+l++++G  v + G  G Gks++++ +   ++++ G++ + g     ++ +      +  sq+ +L d+ ++    ++  ++ ++a+  +++ a  l d    l    p+G++   te+Ge+g  LsGGq qR+a+aRa + d  i +LD+  sa+D+   ++     + +l+ ++t +++ h ++ t  +aD +v++  dG+i+e+G+
  MMETSP1174-20130828|15470_1  15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSV--AYTPQ------SAWSQNATLRDNILFGYEEHTPPTSNERAKYSRVVDACELADdfeqLARGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNlFHRCICKLLADKTRVLVTHQVAlTESRADWVVIVgGDGRILEQGP 224
                  56689******************************99999******9999863..34444......3446666666666665555555555566666666666555551111455568888655589***************************************99776516789****************9835558**98766379*******8 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.2   1.2e-26   8.3e-25     492     696 ..      15     224 ..      12     230 .. 0.78

  Alignments for each domain:
  == domain 1    score: 84.9 bits;  conditional E-value: 1.2e-26
    TIGR00958 492 pdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte......deevtaaakaan.ahdF...iselekgyd...tevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstve.kadkilvlkkg.svvelGt 696
                   + p l ++++ ++pG+ v++ G  G+GKS++ a +    + tgG+v + g              va   q     + ++r+Ni +G ++ +      +++   ++ a+  a+dF     + ++g++   te+gekG  lsgGq+qriA+ARA   +  + +LD+  SA+Da+v + l +    k  +++t +l++h+  + e +ad ++++  + ++ e+G 
  MMETSP1174-20130828|15470_1  15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS-------------VAYTPQSAWSQNATLRDNILFGYEEHTpptsneRAKYSRVVDACElADDFeqlARGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrciCKLLADKTRVLVTHQVALTEsRADWVVIVGGDgRILEQGP 224
                  67789****************************9999999*******99986.............44445555555779********9875422211133444555555447888332346676664444******************************************998877776878899*************99835666666654458998885 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.3e-25   8.8e-24     468     674 ..      15     224 ..      10     229 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 1.3e-25
    TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahd.fiselkqGye...tevgekGaalsGGqrqrialaralvanPrilildeatsaldyesea.vimrnlreickgrtviiiahrlstv.raadri.lvlekGkivesGk 674
                  ++ + l+ ++l+i++G ++ i G +G Gks +   +        G v v g  +a + P++   q    l++n+lf          ++  ++  +v+ a +la   + +    + G++   te+gekG +lsGGq+qrialara  a+  i +ld+  sa+d++  + +  r + ++ +++t + ++h+++    +ad + +v  +G+i+e+G 
  MMETSP1174-20130828|15470_1  15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS-VAYT-PQSAWSQ-NATLRDNILFGYE-EHTPPTSNERAKYSRVVDACELADDFEqLARGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKnLFHRCICKLLADKTRVLVTHQVALTeSRADWVvIVGGDGRILEQGP 224
                  5667899**********************9865555555556789****997.5544.4444344.4579******765.556678999**************87651556789999755589***************************************997651667889999***********987541456655156689******96 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   7.8e-08   5.3e-06      16      66 ..      16      66 ..       5     126 .. 0.82
   2 !   55.5   0.0   1.7e-17   1.2e-15     134     220 ..     140     226 ..     130     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 7.8e-08
    TIGR03265 16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggr 66
                 +  +l+ i+l+++ g lvc+ G  G Gk+++L +i G  k++ G++++ g 
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 556899****************************************99885 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 1.7e-17
    TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLree.lkklqrklgvttimvthdqeealslaDrivvm.nkgkieqvgtPe 220
                   lsGGqqqr+aLara     ++ LLD+Plsa+Da+v ++L +  ++kl    + t ++vth+     s aD +v++  +g+i   g P+
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRcICKLLA--DKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPPS 226
                  59***********************************9997642777765..5699******9999999**998762579998888875 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   3.3e-24   2.2e-22      14     227 ..      17     225 ..       7     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 3.3e-24
    TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrs.lnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiateki.eeliqeLkkkytivivthnmqqaarvsdktaff.leGelveeget 227
                    +l+ +nlei+  +++++ G +G Gks++l + l  ++++  +v+++G+v ++ ++  ++    ++lr ++   + + +p   +  +   y+  +   +  ++++++++ +   ++ ++   +++ +++++LsGGqqqr+++ara   + ++ LlD+P sa+D+  ++++    i +L  + t v+vth+++ ++  +d ++++  +G+++e+g++
  MMETSP1174-20130828|15470_1  17 GPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAiLGEIKKTGGSVHVAGSVAYTPQSAWSQ---NATLRDNILFGYEEHTP--PTSNERAKYSRVVDACELADDFEQLARGK--PSG-FKGDMTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfHRCICKLLADKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPP 225
                  45799**************************873689999999**************9998...689****9777777766..44568888887777777667777766543..344.4455578999*************************************9888763789*********************999998877479*****9986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.3   5.2e-22   3.5e-20      15     213 ..      19     223 ..       9     229 .. 0.79

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 5.2e-22
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvql....eklgdryps..............qlsGGqrqrvalaralavepqvllldepfgaldakvrkel.rawlrklhdevkvttvfvthdqeealevadrivvl.ekGkieqvg 213
                  +ld ++le++ Gslv++ G +G Gks++l +i G  k++ G + + G  +              q  a  +  t+rdni fG e +  ++ + +ak +++++  +l    e+l+   ps               lsGGq+qr+alara   + ++ lld+p++a+da+v k+l  + + kl    + t v+vth+ + +   ad +v++  +G+i + g
  MMETSP1174-20130828|15470_1  19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAY-----------TPQ-SAWSQNATLRDNILFGYEEHTPPTSNERAKYSRVVDACELaddfEQLARGKPSgfkgdmteigekgiTLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfHRCICKLLA--DKTRVLVTHQVALTESRADWVVIVgGDGRILEQG 223
                  6999*****************************************997543...........333.4677889*************9988888888777777666522224566666653333333333333369*************************************95344555543..3589*********999***999873478887666 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.0   2.8e-23   1.9e-21     488     690 ..      18     223 ..      13     228 .. 0.82

  Alignments for each domain:
  == domain 1    score: 74.1 bits;  conditional E-value: 2.8e-23
    TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenv.....sqeeikkaveiaeikddieklpl....Gyq...telseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk..lkdktiifvahrlsvak.ksdkiivl.deGkiieqG 690
                  + l+ i+l+i+  + +++ G++G Gks++   +++  +++ G +++               +++y Pq  +  + ++ +n+l+g +e++     ++ +  ++v+  e+ dd e+l      G++   te+ e++ ++sgGq+qr+alara  +d ++++ld+  s +d  + k++ ++ +   l dkt ++v+h++ +++ ++d ++++  +G+i+eqG
  MMETSP1174-20130828|15470_1  18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVA-------------GSVAYTPQSAWSQNATLRDNILFGYEEHTpptsnERAKYSRVVDACELADDFEQLARgkpsGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICklLADKTRVLVTHQVALTEsRADWVVIVgGDGRILEQG 223
                  57999**********************98877776666666666554.............5799********************988653332245567899************975112256444489999**************************************999999987633489***********9987256666555269******9 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.2e-08   3.5e-06      23      70 ..      19      66 ..      13     111 .. 0.90
   2 !   50.2   0.0   6.3e-16   4.2e-14     138     226 ..     140     227 ..     127     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.2e-08
    TIGR03258 23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadr 70
                  ld + lei +G l+ + G +G Gk+++l a+ G +k  GG + va+ 
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 58999****************************************985 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 6.3e-16
    TIGR03258 138 qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillm.keGslialGetra 226
                   lsGGqqqr+alara   + d+ lld+plsa+da++ +++ +    + + l + t + vth+   +   ad + ++  +G+++++G +  
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHR--CICKLLADKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPPSV 227
                  69*************************************9875..567889***********9999999**99887369**999998765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.1e-08   3.5e-06      14      64 ..      16      66 ..       9      87 .. 0.88
   2 !   44.2   0.0   4.8e-14   3.2e-12     144     232 ..     139     227 ..     130     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 5.1e-08
    TIGR02315 14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegk 64
                 +  +l+ +nlei++G lv + G  G Gks +l +i + ++++ gs+ + g+
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 556899*****************************9999999999998764 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 4.8e-14
    TIGR02315 144 dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinke.kgitvivnlHqvdlakkyadrivgl.kageivfdgasse 232
                   +LsGGqqqR+a+aRa   + ++ l D+P++++D + +k++++  + i+k   + t ++  Hqv l+++ ad +v +  +g+i+ +g++s 
  MMETSP1174-20130828|15470_1 139 ITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFH--RCICKLlADKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPPSV 227
                  58**************************************998..5677752467888889***********9887735788888877765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.5   7.3e-19   4.9e-17      18     208 ..      24     220 ..      19     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 7.3e-19
    TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqnig.lGlkpglklnavq.kekvedvarq..vGiadylerlpee...lsGGqrqrvalarclvrekpillldepfsaldpklreemla.lvkkladekkltlllvthslsdaaaiasqvvvv.edGkik 208
                  +l++  G  v i G +G Gks++l+ i G ++ + G+++v +  +  ++ +       +++n lf +       +    k +  ++a +  +  e++ar    G +  +  + e+   lsGGq+qr+alar    +k i+lld+p+sa+d ++ ++++   + kl  +  +t +lvth++    + a+ vv+v  dG+i 
  MMETSP1174-20130828|15470_1  24 NLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS-VAYTPQSAWSQNATLRDNILFGYEEHTPPTSnERAKYSRVVDACElADDFEQLARGkpSGFKGDMTEIGEKgitLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLAD--KTRVLVTHQVALTESRADWVVIVgGDGRIL 220
                  89999***********************************985.55666677777788899999975443333220334555566665525778888874227999989888875455***********************************999875256676655..57799*******999999999883588886 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   6.7e-09   4.5e-07      13      62 ..      17      66 ..       8     104 .. 0.91
   2 !   35.3   0.0   2.5e-11   1.7e-09     128     214 ..     137     223 ..     130     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.7e-09
    TIGR03410 13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielege 62
                    l +++le++ g++v++ G  g Gk+++l a++g +k++ G+++++g+
  MMETSP1174-20130828|15470_1 17 GPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 56799*****************************************9997 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.5e-11
    TIGR03410 128 rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikei.ekvikelakekdlaillveqvldfaleladrylvle.rGevvaeg 214
                  +g  LsGGqqq +a+aRa  ++  + lLD+P   +   + k++ ++ i +l ++   + +lv +++ ++ + ad ++++   G+++++g
  MMETSP1174-20130828|15470_1 137 KGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfHRCICKLLAD--KTRVLVTHQVALTESRADWVVIVGgDGRILEQG 223
                  6789************************************99747899999875..466788889999******999885267877766 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   6.1e-07   4.1e-05     463     514 ..      14      65 ..      11      70 .. 0.89
   2 !   42.2   0.0   1.2e-13     8e-12     579     669 ..     131     226 ..      77     229 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 6.1e-07
    TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDG 514
                  ++   +Ld ++l+i+pG  v i G  G GKS++l  +Lg  k + Gsv+  G
  MMETSP1174-20130828|15470_1  14 QNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG 65 
                  566789*********************************8888888887666 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 1.2e-13
    TIGR03797 579 hTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrt.QaiVseslekl..kvtRiviAHRLS.Tirnadrilvl.eeGrvveqGsye 669
                   T i e g tlSGGQ+QR+ +Ara      i l+D+  SA+D +  +++    + kl    tR+++ H +  T  +ad ++++  +Gr+ eqG  +
  MMETSP1174-20130828|15470_1 131 MTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVaKNLFHRCICKLlaDKTRVLVTHQVAlTESRADWVVIVgGDGRILEQGPPS 226
                  48899*************************************8761456667888883346********98577899987655279*******865 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.9e-09   5.3e-07      14      81 ..      16      85 ..       9     119 .. 0.85
   2 !   35.4   0.0   2.7e-11   1.8e-09     135     208 ..     138     211 ..     128     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.9e-09
    TIGR02673 14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlre..relpllRrki 81
                 +  +L+ ++l+i++g+++ + G  G Gk+++l  +lg  k + G+v+vag+   + ++  ++ ++lR +i
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSawSQNATLRDNI 85
                 556899********************************************86554433124566666655 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.7e-11
    TIGR02673 135 peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                    +lsgG qqR+a+aRa   + ++ l D+P   +D+++++++++       +  t +++th+ +l+e+++  v+
  MMETSP1174-20130828|15470_1 138 GITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLLADKTRVLVTHQVALTESRADWVV 211
                  578**************************************998665555666777889******999877665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.1e-05    0.0028      15      66 ..      19      70 ..       9      81 .. 0.89
   2 !   46.8   0.0   6.9e-15   4.7e-13     146     232 ..     140     226 ..     130     230 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.1e-05
    TIGR03005 15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyh 66
                  ldg++le+ +G  v + G +G Gks+il  ++   +  +Gs++v g   y 
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYT 70
                 69***************************999988888999***99988876 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 6.9e-15
    TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevln.vlrrlasetdltmllvthemgfarefadrvlff.dkGkiveeGkpd 232
                   lsGGq+qr+a+ara      + l+d++ sa+d ++ ++++   + +l +  d t +lvth++ +++  ad v+     G+i e+G p 
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLA--DKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPPS 226
                  79***********************************9987526777765..6699***************99876268*******996 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.1   4.7e-19   3.2e-17       1     200 [.      25     229 ..      25     231 .] 0.75

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.7e-19
    TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalerv................klteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellve.lfeelagegtailmtthdlaeavatcdrvvll..ngrvvadgapdqlq 200
                  l++ +G l+++ G  G Gk+++l ailg ik++ Gsv+vag         + y pq    aw     +++ +l G   +  +   +++a +  v da e +                ++te+ ++ +  lsGGq+qr+ +ara   +  + lld+p++ +d    ++l +  + +l + +++ +++th++a + + +d vv++  +gr++ +g p+ l+
  MMETSP1174-20130828|15470_1  25 LEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS--------VAYTPQS---AWSQNATLRDNILFGYEEHTPPTS-NERAKYSRVVDACELAddfeqlargkpsgfkgDMTEIGEKGI-TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLA-DKTRVLVTHQVALTESRADWVVIVggDGRILEQGPPSVLR 229
                  57889************************************6........9999995...899999999999999888876653.344455555555443310000011111111114555555555.49*******************************99888776615555555.55667789***************94456899999998776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.3e-07   2.2e-05      12      77 ..      18      84 ..       8     113 .. 0.78
   2 !   38.7   0.0   2.2e-12   1.5e-10     131     202 ..     137     209 ..     130     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.3e-07
    TIGR03608 12 eilkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkekaklksk.kaskllrek 77
                   l+ ++l+i  G+lv i+G  G GKs +L  ilg + k+  g+v + g+ + + +s+ +++  lr++
  MMETSP1174-20130828|15470_1 18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAaILGEIKKTG-GSVHVAGSVAYTPQSAwSQNATLRDN 84
                 57999***********************9963778887665.99998887755544431334445555 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.2e-12
    TIGR03608 131 kiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek.adr 202
                  k  +lsgG++qR+alar+   + ++ l D+P +++D++  +++++       ++kt ++vtH+ +++e  ad 
  MMETSP1174-20130828|15470_1 137 KGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLLADKTRVLVTHQVALTESrADW 209
                  5568**********************************99999987766677889999*****9998741454 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-09   1.1e-07      14      65 ..      15      66 ..       6     110 .. 0.89
   2 !   30.4   0.0   9.4e-10   6.3e-08     136     209 ..     138     211 ..     125     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.6e-09
    TIGR00960 14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65
                  + ++ld+++++i  G+lv + G +G Gks++l  ilg  k + G ++v+g 
  MMETSP1174-20130828|15470_1 15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 45689********************************************996 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 9.4e-10
    TIGR00960 136 PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvl 209
                   ++lsgG+qqr+a+ara   +  + l d+P + +d ++++++++       a  t ++ th+  l es+   v+
  MMETSP1174-20130828|15470_1 138 GITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLLADKTRVLVTHQVALTESRADWVV 211
                  579**************************************9986666666777888889**999998876655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1     2e-18   1.4e-16     490     694 ..      15     224 ..      12     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 2e-18
    TIGR03796 490 leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvi.larpggye...aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR...gctciivaHRLs.tiRdcde.iivlerGkvverGt 694
                   + p +++++l+++pG+ v + G  G Gks i   + G  +++ G++ + g  +   p+++ ++  +l d + +lf+   +      +e  + +++v+A++ A   +++   +p g++   +e+ e g  lsGGq+qR+ +ARa  ++  i +lD+  sa+Da++ k++ ++   +     t ++v+H ++ t   +d  +iv   G+++e+G 
  MMETSP1174-20130828|15470_1  15 NNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVA-YTPQSAWSQNATLRD-N-ILFGYEEHT-PPTSNERAKYSRVVDACELADDFEQLaRGKPSGFKgdmTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKllaDKTRVLVTHQVAlTESRADWvVIVGGDGRILEQGP 224
                  567999*****************************************9988654.445555555444433.3.344433333.33456667888999999999766665156899998222456678899***********************************999877654432226799*****97623334555155667999999996 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.1e-08   5.5e-06       1      50 [.      20      69 ..      20      92 .. 0.93
   2 !   34.0   0.0   6.9e-11   4.6e-09     113     188 ..     139     213 ..     128     222 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.1e-08
    TIGR01184  1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeit 50
                 l++++lei+ g ++++ g +g gks++l  i g  k t g+v++ g    
  MMETSP1174-20130828|15470_1 20 LDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAY 69
                 689****************************************9997655 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 6.9e-11
    TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekll.kiveearvtvlmvthdvdealllsdrvvml 188
                    lsgg +qr+a+ara     ++ lld+p+ a+da   ++l ++ + k++  a+ t ++vth+v  +   +d vv++
  MMETSP1174-20130828|15470_1 139 ITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCIcKLL--ADKTRVLVTHQVALTESRADWVVIV 213
                  469********************************999999998751444..456899******9888888888876 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.9e-08   2.7e-06      14      83 ..      13      84 ..       3      93 .. 0.77
   2 !   32.4   0.0     2e-10   1.3e-08     137     207 ..     136     205 ..     129     219 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.9e-08
    TIGR02211 14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklss..neraklrnk 83
                  +++  +l+g++lei+ g lv i G +G Gks +l  + g  k t G+v ++G    +  s  +++a+lr++
  MMETSP1174-20130828|15470_1 13 SQNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSawSQNATLRDN 84
                 4556679**************************998777777889********8655433312466777754 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2e-10
    TIGR02211 137 kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkife.lllelnkekntallvvthdlelakk 207
                  +k   lsGG++qr+a+ara   + ++ l d+P + +d++ ak++f+  + +l  +k  + ++vth+  l + 
  MMETSP1174-20130828|15470_1 136 EKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLADK--TRVLVTHQVALTES 205
                  66778**************************************9973567776654..45789**9999875 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   1.6   4.4e-17     3e-15      15     222 ..      18     226 ..       8     229 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 4.4e-17
    TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad....lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlell.alvrelaaegvtvvvalhdlnlaasvcdhvvvld.gGrvvaaGppa 222
                  + +d+++++  +G+l  + G  G Gks +l  + G ++ + G+v++ag+       a+s+ a  r   l     ++++p +  +     r+     +a d  e  +  +    + +++++ ++ + tlsGG++qr+ lara   +  + lld+P   +d +   +l+ + + +l a+++ v+   h ++l+ s +d vv+++  Gr+   Gpp+
  MMETSP1174-20130828|15470_1  18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVaytpQSAWSQNATLRDNILF--GYEEHTPPTSNERAKYSRVVDACELADDF-EQLARGKPSGFKGDMTEIGEKGI-TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFhRCICKLLADKTRVL-VTHQVALTESRADWVVIVGgDGRILEQGPPS 226
                  679******************************************9998733334455555544444444..45566677888999999999999999888.44445555566789999999876.9********************************87666655267778877776665.57***********99887626*******997 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-05    0.0011      10      55 ..      21      66 ..      15     114 .. 0.92
   2 !   40.0   0.0   8.2e-13   5.5e-11     129     214 ..     140     225 ..     130     229 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.6e-05
    TIGR01186 10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGe 55
                 + ++lei  G +++i G++G Gks+++  +   i  t G +++ G 
  MMETSP1174-20130828|15470_1 21 DGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 6799**************************************9996 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 8.2e-13
    TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqde.lvklqkklqktivfithdldealrlgdrivilk.aGeivqvGtP 214
                   lsGG+qqr+ lara  a+ d+ l+d+++sa+d  + ++l +  + kl    +kt v++th +  +   +d +vi+  +G i+  G P
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRcICKLL--ADKTRVLVTHQVALTESRADWVVIVGgDGRILEQGPP 225
                  59********************************999999776256775..57999******9999999**99998538999988877 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   6.7e-06   0.00045      16      61 ..      23      68 ..      12      82 .. 0.86
   2 !   37.4   0.0   5.4e-12   3.6e-10     131     216 ..     140     225 ..     134     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 6.7e-06
    TIGR02142 16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevl 61
                 ++le+    ++ ++G+ G Gk+s++ +i G ++ + g ++++g v 
  MMETSP1174-20130828|15470_1 23 INLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVA 68
                 67777666999********************************985 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 5.4e-12
    TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilP..yLerlsaelkiPilyvsHsldevarladrvvvl.edGrvkaagkl 216
                  +LsGG +qR+a++RA  ++ ++ l+D+PL+a+D +  k+++     + l+++++   ++v H++   +  ad vv++  dGr+  +g++
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrcICKLLADKTR---VLVTHQVALTESRADWVVIVgGDGRILEQGPP 225
                  7**********************************9999974213455666665...799************99988459**9999986 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-06   0.00015      14      71 ..      18      75 ..       8      84 .. 0.86
   2 !   34.7   0.0   4.3e-11   2.9e-09     127     190 ..     140     204 ..     130     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-06
    TIGR01189 14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdel 71
                   l g+++e+ +G ++ + G  G GK+++L  + G +k + G+v+++++   + ++ +
  MMETSP1174-20130828|15470_1 18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSAW 75
                 67899****************************************9987666655555 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 4.3e-11
    TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkeg.vellaellaaHlargGivllathqdlgl 190
                  +Ls Gq++R+alar   + + +++LD+P+ a+D++   +l+++ + + la    vl++ + +l  
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVaKNLFHRCICKLLADKTRVLVTHQVALTE 204
                  79*******************************99735666777777777777777766656654 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   1.2e-16     8e-15      20     205 ..      19     203 ..      10     222 .. 0.74

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.2e-16
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelk..gasekelvqvrrkiGyifqahnllesl..taeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevve.llqklareqgttillvthdnril 205
                   l  inlei+pg +v + G +G Gk  +l+ i g  +   G+++v g+  +  +   ++   +r +i + + +h   +s   +    v  a el++++++ ++ + +           ++  k   lsgGq+qr+a+ara  a  ++ l d+P +a+d++ ++++ +  + kl  ++  t +lvth   + 
  MMETSP1174-20130828|15470_1  19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYtpQSAWSQNATLRDNILFGYEEHTPPTSNerAKYSRVVDACELADDFEQLARGKPSGFKGD----MTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLADK--TRVLVTHQVALT 203
                  5889*************************99988888899******98754114445678889****999999987655411334567778888888777776666654333....3456677899***********************************9998752334443333..456666665443 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.9e-06   0.00026      23      75 ..      16      68 ..       6     118 .. 0.88
   2 !   34.6   0.0   4.5e-11     3e-09     150     232 ..     140     222 ..     128     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.9e-06
    TIGR02769 23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdl 75
                   + ld+++l+++ G  v + G +G Gks +   +lG  k + G+v+ +G   
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVA 68
                 55789**************************99**************999754 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 4.5e-11
    TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasile.llkklkqefGlaylfithdlrlvqkfaqrvlvl.deGqivee 232
                   lsGGq qri++ara  ++  + +ld+ +s +d +   ++++  + kl ++   + +++th + l ++ a+ v+++  +G+i+e+
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLAD--KTRVLVTHQVALTESRADWVVIVgGDGRILEQ 222
                  69********************************99888875146666655..5789**************99887358****98 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.2e-16   8.4e-15     353     551 ..      22     223 ..      10     229 .. 0.70

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 1.2e-16
    TIGR01192 353 dvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlg.........redatdeevveaakaaaasdfie.kr...lkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetear.vkdaidalrknrttfiiahrls.tvreadlvlfl.dqgrliekg 551
                   + +e++ g  v i g tg gk++++  +    + + g + + g             s+a   q a   n ++r+ni +g         +e a    vv+a++ a   + +   +    kg  t +ge+g  lsgg++qr+a+ara   +  i +ld+  sa+d        +  i  l  ++t  +++h+++ t   ad v+++  +gr++e+g
  MMETSP1174-20130828|15470_1  22 GINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG-------------SVAYTPQSAWSQNATLRDNILFGyeehtpptsNERAKYSRVVDACELADDFEQLArGKpsgFKGDMTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNlFHRCICKLLADKTRVLVTHQVAlTESRADWVVIVgGDGRILEQG 223
                  57788888888888899998888877665555556666666666.............444445555555555555555551110000005556666777777766544433323322257778*****************************************99866515788999*************97355678987766269*****99 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     2e-08   1.3e-06      20      69 ..      16      65 ..       4      83 .. 0.88
   2 !   25.2   0.0   3.2e-08   2.1e-06     149     186 ..     140     177 ..     137     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2e-08
    TIGR02324 20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69
                 + p+l+ ++le++ G lv++ G +G Gks++l ++ ++ +  +g++ v  
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG 65
                 458899************************************99998865 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 3.2e-08
    TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrk 186
                  t sGG +qR+ +ara  ad+ i LLd+P +++da   k
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAK 177
                  99******************************997655 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1     8e-08   5.4e-06       5      54 ..      17      66 ..      14      81 .. 0.89
   2 !   27.2   0.0   7.7e-09   5.2e-07     127     189 ..     140     202 ..     128     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 8e-08
    TIGR01166  5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe 54
                    l+g+nl+++ g+ +++ G  G Gks +l  + G ++ + G v + G+
  MMETSP1174-20130828|15470_1 17 GPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 448*******************************************9996 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 7.7e-09
    TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpaGaeqll.eilrklreeGktvvisthdvdl 189
                  +lsgG+++r+a+a a     d+ lld+P + +d++ a++l  + + kl ++ +  v+ th v+l
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFhRCICKLLADKTR-VLVTHQVAL 202
                  79********************************99888752689999887655.667999988 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.3   1.9e-15   1.3e-13      89     185 ..     130     225 ..      35     229 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.9e-15
    TIGR01187  89 qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqekl.GitvvlvthDqeealtmsdriavlr.kGkiaqigep 185
                  +++e++++  + lsGGq+qr+alara     +i LlD+plsa+D ++ +++ +    + + l   t vlvth      + +d ++++  +G+i+  g p
  MMETSP1174-20130828|15470_1 130 DMTEIGEK-GITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRC--ICKLLaDKTRVLVTHQVALTESRADWVVIVGgDGRILEQGPP 225
                  57777764.567***********************************99987753..3333314699*****987777788999988537999887766 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.4e-05   0.00091       7      54 ..      18      65 ..      13      88 .. 0.92
   2 !   33.3   0.0   9.9e-11   6.7e-09     124     211 ..     140     228 ..     129     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.4e-05
    TIGR01188  7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaG 54
                   +dg+nl+++ g+++ + G  G GK+ ++  + + +k ++G++ vaG
  MMETSP1174-20130828|15470_1 18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAG 65
                 579***************************999999***********9 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 9.9e-11
    TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiw.dlieelkkegvtilltthyleeadkladrvaiid.kGkiiaedtpeeL 211
                  t+sgG+++r+ la++  a+ +++ LD+P + +D++ ++++  + i +l   ++t +l th++   ++ ad v i+   G+i+ ++ p  L
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFhRCICKLLA-DKTRVLVTHQVALTESRADWVVIVGgDGRILEQGPPSVL 228
                  79********************************9877665167777765.6677778999***********999537999999887765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   0.00013    0.0087      40      84 ..      20      64 ..       4      87 .. 0.83
   2 !   36.4   0.0   9.1e-12   6.1e-10     163     226 ..     139     201 ..      74     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00013
    TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvk 84
                  ++++l+++ G ++ + G++G Gkss+l a+ g    + G+v+v 
  MMETSP1174-20130828|15470_1 20 LDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVA 64
                 46789**************************99888888888876 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 9.1e-12
    TIGR03415 163 gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdld 226
                    lsGG qqr+ lara   + di l+d+P+sa+d  + ++l    +  +    kt v+v+h + 
  MMETSP1174-20130828|15470_1 139 ITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCIC-KLLADKTRVLVTHQVA 201
                  469**********************************9999887663.3344788888888764 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.5e-07   2.4e-05      16      64 ..      19      67 ..      11      83 .. 0.90
   2 !   27.4   0.0   6.6e-09   4.4e-07     128     219 ..     136     228 ..     128     231 .] 0.75

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.5e-07
    TIGR03864 16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGld 64
                 +ld+++l++++g++v + G+ G Gks +++ + + ++++ g+++vaG+ 
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSV 67
                 79*********************************************74 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 6.6e-09
    TIGR03864 128 ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalvee.vrelvreeglsvLWathlvd..eveaedrlvvlhkGkvlaqGaaael 219
                  ek  +L+GG+++r+ +ara   + ++ LlD++   +D++  ++l +  + +l  +++  vL  th v   e +a+  ++v   G++l qG ++ l
  MMETSP1174-20130828|15470_1 136 EKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRcICKLL-ADKTRVL-VTHQVAltESRADWVVIVGGDGRILEQGPPSVL 228
                  55668*********************************988888765155555.5555666.4666551144444455555799*****988766 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.5e-07   3.7e-05      17      67 ..      19      69 ..       9      94 .. 0.88
   2 !   26.1   0.0   1.7e-08   1.2e-06     130     211 ..     137     220 ..     126     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.5e-07
    TIGR03522 17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvl 67
                 +ld + +e+++G++v   G  G Gks+++  + g +k ++Gsv+vag+ + 
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAY 69
                 69********************************************98665 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.7e-08
    TIGR03522 130 kigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revikeiakdktvilsthimqevealcdrviiin.kGkiv 211
                  k   ls G +qr+ la+a   d ++ +ld+P + +d     ++  + i ++  dkt +l th +   e+  d v+i+   G+i+
  MMETSP1174-20130828|15470_1 137 KGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfHRCICKLLADKTRVLVTHQVALTESRADWVVIVGgDGRIL 220
                  44579*******************************98777653678888999********************99995368886 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.2e-14   8.2e-13     471     626 ..      22     183 ..      15     204 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.2e-14
    TIGR00954 471 eLsfevksGnhlLiiGPnGcGKsslf.RilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg.........wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela 626
                   +++e++ G+ + i G  G GKss+   ilge+  + g   ++   g + y Pq  +  + tlRd i++    +       + ++  ++++  +L d  e+            +  + +    LsgG++qRia+AR  y      +LD+  sAv   v ++l++ +
  MMETSP1174-20130828|15470_1  22 GINLEIRPGSLVCIYGVTGGGKSSILaAILGEIKKTGG---SVHVAGSVAYTPQSAWSQNATLRDNILFGYEEHTPP-TSNERAKYSRVVDACELADDFEQLARgkpsgfkgdMTEIGEKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRC 183
                  6799********************762799**987655...455678999******************965443322.233334455555555555433332222445666668999999999*****************99999******************987 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   5.7e-05    0.0038       3      52 ..      21      66 ..      19      86 .. 0.77
   2 !   29.7   0.0   1.2e-09   8.3e-08     125     210 ..     140     225 ..     132     228 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.7e-05
    TIGR02770  3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgk 52
                 +++nl+++ g ++ + G  G Gks   +ailg ++    kt G++ ++g 
  MMETSP1174-20130828|15470_1 21 DGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIK----KTGGSVHVAGS 66
                 689***************************99766....44444444443 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.2e-09
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLkl.leelrekrglgillithDlgvvaeladevavm.ekGkivergtv 210
                   lsGG  qR+ +a a  ++  + + D+P +++D+ v++++ +  + +l    + + +l+th ++     ad v+++  +G+i+e+g++
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRcICKLL--ADKTRVLVTHQVALTESRADWVVIVgGDGRILEQGPP 225
                  69***********************************999876144554..4556689*************98877369******976 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1   6.5e-14   4.4e-12      20     224 ..      19     224 ..      10     228 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 6.5e-14
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsn..aelvkarrqigmifqhfnllss..rtvfgnvalplelentpkekikrkvtella.lvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrl.gltillithemdvvkricdevavid.kgeliekgt 224
                  +ld ++l +  g ++ + g +g gks+++  +    k t g+v v g    t +   ++ ++ r +i + ++     +s  r+ +  v    el++  ++  + k + +   +  +++k       lsggq+qr+a+ara  ++  + l d+  sa+d   ++ +++  + i + l + t +l+th++ +  +  d v +++ +g+++e+g 
  MMETSP1174-20130828|15470_1  19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSawSQNATLRDNILFGYEEHTPPTSneRAKYSRVVDACELADDFEQLARGKPSGFKGdMTEIGEK----GITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFH--RCICKLLaDKTRVLVTHQVALTESRADWVVIVGgDGRILEQGP 224
                  7999************************9999888899********97654443312677788889988887666554434999*************9999999988776414445554....578*********************************99998765..4566665357899**************999885379****985 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.015         1      22      66 ..      22      66 ..      12      82 .. 0.86
   2 !   34.4   0.0   3.8e-11   2.6e-09     135     220 ..     140     225 ..     132     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.015
    TIGR01288 22 dlsftiaagecfgllgpngagkstiarlvlglispdegkitvlge 66
                  + + i  g    + g  g gks+i   +lg i    g + v g+
  MMETSP1174-20130828|15470_1 22 GINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 56777888999999**********************999999875 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 3.8e-11
    TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpd 220
                  +lsgg ++r++lara   d ++ +ld+p + +d h  + ++ r  + l   kt +l th +  +e   d ++++    +i e  p 
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLLADKTRVLVTHQVALTESRADWVVIVGGDGRILEQGPP 225
                  69*********************************9999999988888889******************99998766666654443 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.8e-05    0.0012     338     389 ..      20      69 ..       8      91 .. 0.84
   2 !   23.6   0.0   5.8e-08   3.9e-06     161     230 ..     140     212 ..     130     220 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-05
    TIGR03719 338 iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklay 389
                  +d +++++ +g++v + G  G Gks ++  i g+ k+  G++++  +v   y
  MMETSP1174-20130828|15470_1  20 LDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVA--Y 69 
                  788999999*************************999999999988774..3 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 5.8e-08
    TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWl.ekflkey..kGtvvavthdryfldnvaeWile 230
                  +lsGG+++r+al+r    + d+ lld+P   +da   + l ++ + +   + t v+vth   + +  a+W++ 
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfHRCICKLlaDKTRVLVTHQVALTESRADWVVI 212
                  79*********************************988772555655422569999**************975 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-05    0.0014     620     657 ..      17      54 ..       2      64 .. 0.84
   2 !   23.9   0.0   3.4e-08   2.3e-06     821     907 ..     133     217 ..     129     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-05
    TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiLvka 657
                     l  i+++i+ g l++i Gv g Gks+++  iL ++
  MMETSP1174-20130828|15470_1  17 GPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEI 54 
                  446899**************************999765 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 3.4e-08
    TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLle.vlqrlvdkGntvvviehnldvik.saDyiidlGPeG 907
                  ++G++  tLsGG  qr+ La+        k +y+lD+P   +  +  k+L++  + +l +  +t v++ h + +    aD+++ +G +G
  MMETSP1174-20130828|15470_1 133 EIGEKGITLSGGQQQRIALARACY---ADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLA-DKTRVLVTHQVALTEsRADWVVIVGGDG 217
                  68999***************9765...5789**************99*999744555554.46888899999998626*******9998 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     3e-07     2e-05      18      64 ..      20      66 ..      13      78 .. 0.92
   2 !   17.3   0.0   9.3e-06   0.00063     139     224 ..     136     223 ..     130     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3e-07
    TIGR03411 18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64
                 l+ ++l++++g+l +i G  G Gk+ +l +i G ++ + Gsv + g+
  MMETSP1174-20130828|15470_1 20 LDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 7889**************************************98775 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 9.3e-06
    TIGR03411 139 kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetek.taellkelakersvvvvehDmefvrelaekvtvl.heGkvlaeG 224
                  +k  +Ls Gq+q++ ++     + ++ llD+P + + ++  ++   + + +l  +++ v+v h +   ++ a+ v ++  +G++l +G
  MMETSP1174-20130828|15470_1 136 EKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNlFHRCICKLLADKTRVLVTHQVALTESRADWVVIVgGDGRILEQG 223
                  56678****************************999877665515778999999999999*********9998776652689999988 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   3.8e-07   2.6e-05      12      63 ..      16      65 ..      10      75 .. 0.84
   2 !   16.6   0.0   1.3e-05   0.00089     145     231 ..     141     227 ..     108     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.8e-07
    TIGR01978 12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkg 63
                 + + L+g+nle+++G ++ i G  G Gks + +++ g+ k   t G+++++g
  MMETSP1174-20130828|15470_1 16 NGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIK--KTGGSVHVAG 65
                 56789*******************************9754..4667776665 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.3e-05
    TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivae.gvnklreeekalliithyerllelikPdvvhvlldGrivksGdvel 231
                   sGG ++r  + +    + ++ +LD+  s +D    k +++ ++ kl   +k+ +++th+  l e+ +  vv v  dGri+++G  ++
  MMETSP1174-20130828|15470_1 141 LSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLA-DKTRVLVTHQVALTESRADWVVIVGGDGRILEQGPPSV 227
                  69*******************************9988876516666665.5667889*******998888888899********8776 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05     0.001    1948    2013 ..      13      78 ..       5      91 .. 0.91
   2 !   20.2   0.0   1.7e-07   1.2e-05    1057    1148 ..     136     229 ..     117     231 .] 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
    TIGR01257 1948 sgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqn 2013
                   s +  p++d + + +rpg  + + gv g gk++ +  + g+   t g   vag    t  s   qn
  MMETSP1174-20130828|15470_1   13 SQNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGSVAYTPQSAWSQN 78  
                   5667899**********************************************9999988887777 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.7e-07
    TIGR01257 1057 eeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwd.lllkyrsgrtiimsthhmdeadllgdriaiis.qgrlycsgtplflk 1148
                   e+   lsgg q+++++a a   d  + +ld+p s vd +  + ++   + k  + +t ++ th++  ++   d + i+  +gr+   g p +l+
  MMETSP1174-20130828|15470_1  136 EKGITLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrCICKLLADKTRVLVTHQVALTESRADWVVIVGgDGRILEQGPPSVLR 229 
                   566789********************************9999987626789***********************99995389999999887775 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00073     0.049      39      77 ..      18      56 ..       2      79 .. 0.76
   2 !   24.0   0.0   4.1e-08   2.8e-06     155     225 ..     131     199 ..     127     226 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00073
    TIGR00955 39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsek 77
                   l ++  ++++G l+ + G  G GK+ +l+a+    +k
  MMETSP1174-20130828|15470_1 18 PTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKK 56
                 5677778899********************998765544 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 4.1e-08
    TIGR00955 155 dtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvk..vLkklaqkgktviltiHQ 225
                   t ig +g   +lSgG+++R+ala     d  + ++D+P s  D+  a+++ +  + k la+k +  +l+ HQ
  MMETSP1174-20130828|15470_1 131 MTEIGEKGI--TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHrcICKLLADKTR--VLVTHQ 199
                  588997775..9**************************************996446788888887..555677 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-05    0.0016      21      60 ..      23      63 ..       9      78 .. 0.87
   2 !   18.3   0.0   4.3e-06   0.00029     138     225 ..     137     228 ..     117     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-05
    TIGR02323 21 vsf.lypGevlgivGesGsGkstllkalaarlladaGevty 60
                 +++ ++pG +++i G +G Gks++l+a+ +++  + G+v+ 
  MMETSP1174-20130828|15470_1 23 INLeIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHV 63
                 67779*************************99999999875 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 4.3e-06
    TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrel.glaviivth.lavarllaqrll.vmkqGrvvesGltrvl 225
                  k  ++sGG qqr+ +ar+  +   + ++ +p   + +  a+ l+ r + + l + + ++vth +a++   a+ ++ v   Gr++e+G   vl
  MMETSP1174-20130828|15470_1 137 KGITLSGGQQQRIALARACYADKDIYLLdDPLSAVDAHVAKNLFHRCICKLLaDKTRVLVTHqVALTESRADWVViVGGDGRILEQGPPSVL 228
                  55689**************999999888899999988889999999988865256789****99*999999987515579******976665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1    0.0012     0.077     300     343 ..      20      63 ..      14      77 .. 0.86
   2 !   22.5   0.0   1.2e-07   7.9e-06     168     254 ..     140     226 ..     129     229 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
    TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevev 343
                  +d+++le++ + +  + G++G Gk+++   ++G ++ t G v+v
  MMETSP1174-20130828|15470_1  20 LDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHV 63 
                  68999999999999999999999999988899999999888876 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.2e-07
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktak.lvhealkeavkeedislvltshwpeviedlsdkaill.ekGeiveeGepe 254
                   lsGG++qr+ lar    +  ++l d+p  ++d + ak l h  + +   ++  + vl +h   + e  +d  +++  +G i e+G p+
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKnLFHRCICKLLADK--TRVLVTHQVALTESRADWVVIVgGDGRILEQGPPS 226
                  59*************9999999999*********998548999999998776..56777899999999999888773589999999875 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     7e-05    0.0047      16      54 ..      19      58 ..      11      84 .. 0.81
   2 !   18.5   0.0   1.8e-06   0.00012     403     476 ..     140     213 ..      99     222 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7e-05
    TIGR02633 16 aldnidlklraGeivslcGenGaGkstlm.kvlsgvyphG 54
                 +ld+i+l++r+G +v + G  G Gks+++  +l  +  +G
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILaAILGEIKKTG 58
                 69***********************976516787777665 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.8e-06
    TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvG.akyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvi 476
                  +lsGG+qq+  la+    +  + +ld+p   vd   ak   ++ i +l ++   ++v + ++a     +d v+++
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHvAKNLFHRCICKLLADKTRVLV-THQVALTESRADWVVIV 213
                  69*******************************863777778899988877766544.44555555566666554 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.7e-05    0.0031     348     403 ..      11      66 ..       2      86 .. 0.84
   2 !   14.2   0.0   3.8e-05    0.0026     469     529 ..     140     199 ..     127     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.7e-05
    TIGR01194 348 dvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGe 403
                  +    +g +l  i+l i  G lv i G  G Gks+++  +lG  +   G + + G 
  MMETSP1174-20130828|15470_1  11 EDSQNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66 
                  344456778999*************************9999998888888877775 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.8e-05
    TIGR01194 469 dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishd 529
                   ls Gq++r+al  a   ++ ++lld+  +  d    + +++  +  l    kt ++++h+
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLFHRCICKLL-ADKTRVLVTHQ 199
                  69************************98777777766555555555554.34677777775 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.9e-06    0.0006      15      62 ..      19      66 ..       8      77 .. 0.91
   2 !   10.6   0.0    0.0011     0.073     124     198 ..     140     214 ..     128     224 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 8.9e-06
    TIGR03740 15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr 62
                  ++ ++l+++  s+  + G+ G Gks++l  + G ++kt G++ + g+
  MMETSP1174-20130828|15470_1 19 TLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTGGSVHVAGS 66
                 6899**************************************998775 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0011
    TIGR03740 124 qfslGmkqrlGiaiallnkPkllildePtnGldPlGiqel..reliksfpekGitvilsshilsevelladhiGiis 198
                   +s G +qr+ +a a   + ++ +ld+P   +d    ++l  r + k + +k  t +l +h ++  e  ad + i+ 
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKNLfhRCICKLLADK--TRVLVTHQVALTESRADWVVIVG 214
                  578899****************************999998544555555554..44566788888888899988774 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00079     0.053      71     128 ..      14      73 ..       4      94 .. 0.72
   2 !    6.1   0.0    0.0055      0.37     209     942 ..     140     180 ..     129     222 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00079
    TIGR00956  71 skkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegf..kkgkeskitYdgls 128
                  +++   l  ++  i+pg lv + G  g G+s++L +i +++++   ++ + ++++Y   s
  MMETSP1174-20130828|15470_1  14 QNNGPTLDGINLEIRPGSLVCIYGVTGGGKSSILAAILGEIKKTggSVHVAGSVAYTPQS 73 
                  455556666777799999999999999999999999999988761144567788886555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0055
    TIGR00956 209 GvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyaelekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylklsfdyknkhkWrnlgiilafvvffvvvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsiv 942
                   +sGG+++R+++a ++ a+  i+++D+    +D+  a +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     + 
  MMETSP1174-20130828|15470_1 140 TLSGGQQQRIALARACYADKDIYLLDDPLSAVDAHVAKN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LF 180
                  245666666666666666666666665555555555544.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................32 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00036     0.024     121     149 ..      29      57 ..      22      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00036
    TIGR01420 121 krGlilvtGptGsGKsttlAslidyinke 149
                  +  l+ + G tG GKs  lA+++ +i k+
  MMETSP1174-20130828|15470_1  29 PGSLVCIYGVTGGGKSSILAAILGEIKKT 57 
                  56799********************9886 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00042     0.028      36      86 ..      32      85 ..      12     103 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00042
    TIGR00750 36 vvGltGvPGaGkstlveklieelrrrGlkvav...iavDPsspftGGsllGDrl 86
                  v + Gv G Gks ++ ++  e+++ G  v v   +a  P s+ +  + l D +
  MMETSP1174-20130828|15470_1 32 LVCIYGVTGGGKSSILAAILGEIKKTGGSVHVagsVAYTPQSAWSQNATLRDNI 85
                 68899**********************999775558999**9999999998876 PP

>> TIGR02524  dot_icm_DotB: Dot/Icm secretion system ATPase DotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00058     0.039     135     164 ..      31      60 ..      21      68 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00058
    TIGR02524 135 gvvyvtgatgsgkstllaaiirelieasds 164
                   +v + g tg gks++laai+ e+ ++  s
  MMETSP1174-20130828|15470_1  31 SLVCIYGVTGGGKSSILAAILGEIKKTGGS 60 
                  57999******************9988765 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0012     0.078      28      47 ..      31      50 ..      24      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0012
    TIGR00618 28 klfvicGktGaGKtsLldAI 47
                  l +i G tG GK+s+l AI
  MMETSP1174-20130828|15470_1 31 SLVCIYGVTGGGKSSILAAI 50
                 689****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                        99  (0.0241346); expected 4.1 (0.001)
Passed Fwd filter:                        61  (0.0148708); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 0.99u 0.20s 00:00:01.19 Elapsed: 00:00:01.14
# Mc/sec: 265.13
//
Query:       MMETSP1174-20130828|15473_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.60
# Mc/sec: 87.99
//
Query:       MMETSP1174-20130828|15474_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|15469_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.3   0.1    0.00072   15.3   0.0    2.1  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
          5    2.8   7.9        7.7    2.2   5.5    1.3  1  TIGR00834 ae: anion exchange protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-07   0.00072      37     120 ..     276     364 ..     258     366 .. 0.80
   2 !    3.8   0.0     0.001       2.1     147     187 ..     615     655 ..     603     663 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-07
    TIGR03903  37 hPnivaLlDsGe.aed..gllFavFeyveG..rtlrevLaadGaLpaaetgrLmlqvLDalaaahdaG.vvhRDLkPqnimvsaadvesh 120
                   Pniv L+Ds + +++  + +  +Fe      + l ++   +G Lp +   +++  v  +l   hd+  ++h DLkP+ni++  +d+++h
  MMETSP1174-20130828|15469_1 276 CPNIVSLVDSFRhTGPhgDHMCMIFEVLGPnlLSLIKRYHYQG-LPIKVVKHVVRHVCRGLQFLHDECqIIHTDLKPENILLQPNDTSPH 364
                  59*******854133222589999*976431234556666677.9999999**************9855*************99999887 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.001
    TIGR03903 147 tevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  te + + +Y +Pe + g p  + +D+++   +++e LtG+ 
  MMETSP1174-20130828|15469_1 615 TEDIQTRQYRSPEVILGAPYDTSADIWSLACMIFELLTGDL 655
                  7889999********************************85 PP

>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   5.5    0.0038       7.7      67     168 ..     425     528 ..     396     602 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0038
    TIGR00834  67 eetslpgvaekvvdelieedqlkpedrdevlraLLlkhshqedakklealsaarslssigkslss..easeiekpee....................gaplleseketeskllsvakdissrek 168
                  ++t + ++   + +   ++ ++ +++r ++++ L +k+++++++ +  + +++   ++ ++++ss  + +++ +pe                                        ++ +s+e+
  MMETSP1174-20130828|15469_1 425 DATAVEQLTSRLEEADLMKSHMTSAERRKLKKKLKKKRQKKNKQSS--QCNNNSNNNNNNNNKSSnnNNDSQCHPEGrvieeesdghkgkdaevaqmL------------------SQGASQEQ 528
                  4566777777777777888888889999999998877777744333..33333333333333333123333344544555544444444433322221..................22222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:01.22
# Mc/sec: 823.31
//
Query:       MMETSP1174-20130828|15475_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   17.3   0.0    0.00019   17.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.5e-08   0.00019      82     117 ..       5      40 ..       1      99 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.5e-08
    TIGR03903  82 grLmlqvLDalaaahdaGvvhRDLkPqnimvsaadv 117
                  ++++ q L + a+ h++  +hRD+kP n+++s +  
  MMETSP1174-20130828|15475_1   5 AEILFQLLQGAAMIHAHNTTHRDVKPTNVVLSLRPS 40 
                  56889**************************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.69
# Mc/sec: 407.44
//
Query:       MMETSP1174-20130828|15476_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1174-20130828|15479_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|15478_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-10   36.1   0.4    7.8e-10   36.1   0.3    6.1  6  TIGR01622 SF-CC1: splicing factor, CC1-like family
      2e-07   28.3  11.6    2.1e-06   25.0   0.0    3.2  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00034   18.1   0.0       0.11    9.8   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0087   12.4   0.0      0.043   10.1   0.0    7.3  7  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.6  13.1         4   4.1e+03       7     151 ..      64     231 ..      61     243 .. 0.49
   2 !    6.9   0.3   0.00058      0.59     263     314 ..     248     301 ..     235     330 .. 0.70
   3 ?  -20.9  32.5         4   4.1e+03       3     102 ..     338     407 ..     303     469 .. 0.41
   4 ?  -10.7   8.4         4   4.1e+03      11     118 ..     426     540 ..     421     544 .. 0.51
   5 ?   -8.3  10.3         4   4.1e+03      46     127 ..     585     667 ..     573     701 .. 0.36
   6 !   36.1   0.3   7.7e-13   7.8e-10      85     193 ..     746     858 ..     727     900 .. 0.71

  Alignments for each domain:
  == domain 1    score: -9.6 bits;  conditional E-value: 4
    TIGR01622   7 reRsRdssreadrdrerdksr..ersRdrsrdRersrskerdrdfdrrdrdrdky.....rdrerr........srkrresererereker.rredevrrk.rkeredrrerrek.....eer.lkeelteeeRDart.vfvlqlalklreRdlkEFFskvgkvrdvrl 151
                  r+RsR+++ ++d+ + ++++r  + +    ++R+ ++ ++ d    +++  ++ +      +r+ +        +r++++++  ++   +r   ++++r+  r + +d r+r e+     eer  +++   +  + rt v v  +a+   +Rd++E  sk+g   d ++
  MMETSP1174-20130828|15478_1  64 RKRSRSNNFDNDEPPPSSRGRfsHEDDPNVKSRHDGSFRSEDNYPTNQNHAGNFPtsntgTGRRVEdpradylpHRNQNDNGTRHDFPARRePPPERYRSDyRDNHNDYRDRHETdwplgEERmQHDDRRRASAETRTrVHVNGIAA-GCQRDVEERLSKIGTLVDFQI 231
                  566666666666666555554224444555666666655555432222222221100000222222110001113444444444444444422345555431334455566666655565555445555555566777344444544.567999999999998888876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00058
    TIGR01622 263 yGFiqFsdaeeakeAleklNGlelAGReikvglas.D.vteesdaslaskfeds 314
                  yG  +++ +  a +A+ +lNG  l G++++    + D     + a++++++ ++
  MMETSP1174-20130828|15478_1 248 YGIATYKTSHDAARAIAELNGCPLSGKQLRLRWDRvDgERFGTRANSQHQQSNQ 301
                  9****************************9987321223334445455555444 PP

  == domain 3    score: -20.9 bits;  conditional E-value: 4
    TIGR01622   3 rdrereRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerr 102
                  +dr+r+R+ d+sr +d+d +r  +r+++ + s++R  +                                +++ ++++   r+ ++rr   e++d   r 
  MMETSP1174-20130828|15478_1 338 HDRQRDRHDDQSRSRDEDDRRGDDRHGNNNNSNQRTDGG------------------------------GDYDSRNDEGNSRGGSRRRTASEDGDDDARS 407
                  222222222222222222222222222222222222222..............................2222222221222222222222222221111 PP

  == domain 4    score: -10.7 bits;  conditional E-value: 4
    TIGR01622  11 RdssreadrdrerdksrersRdrsrdRersr....skerdrdfdr.rdrdrdkyrdrerrsrkrrese.rererekerrredevrrkrkeredrre.rrekeer.lkeelteeeRD 118
                  Rd +++ d   +rd++ +     ++d   ++    + +     d+  + d d+ r ++ +  ++ e+e  +r ++k  + ++e++++   +e +++ +++ ++   +++++e+  D
  MMETSP1174-20130828|15478_1 426 RDDRSDDDYGERRDEKEDSPLLDEKDDPAEKqsmvDGDTVMSTDElEHGDDDYDRPPHDDPPQQDEEEqVSRAQDK-PKVDNEYESQPVDDETNKSvVDNMDDSaPIDDVNEQSVD 540
                  4555555544455544444433333333333101133333334445667777777777665555444404444444.466788887766666555514555666467777777666 PP

  == domain 5    score: -8.3 bits;  conditional E-value: 4
    TIGR01622  46 drdfdrrdrdrdkyrdrerrsrkrreserere...rekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlql 127
                  dr   rr  d ++  +re ++r+ ++++   +    +++  rede++  ++ +e++ e++e++     e + +e ++ t +  ++
  MMETSP1174-20130828|15478_1 585 DRSPSRRSNDIEPSVNREEEEREPSPHKSASNasiDGDSVTREDESE--KRYEEEEPEQEETQWSPVHEGESKEPNEDTSLNHDM 667
                  23333333333333333333333332222211000112223333333..122222222222211111222222222222222222 PP

  == domain 6    score: 36.1 bits;  conditional E-value: 7.7e-13
    TIGR01622  85 edevrrkrkeredrrerrek.eer.lkeelteeeRDar...tvfvlqlalklreRdlkEFF.skvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivq 193
                   +++r    +  + r r e    +  +   + + RD+     v v +la +l e d++ FF ++ g v  v l k  +S+rS+G  +vEF  +++v +Al l+   l ++ +iv 
  MMETSP1174-20130828|15478_1 746 INRSRDG-DRHSSSRGRSESsGGGqRRPSSNHDARDSTvspGVHVKNLAYRLSEVDIERFFgDRCGGVIRVDL-KREESGRSRGFCFVEFDSNQAVDAALRLNKTCLEDREIIVS 858
                  3333311.11122222222221121233445566776422269******************446789999986.7789*********************************9996 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00015      0.15      42      80 ..     246     284 ..     218     373 .. 0.93
   2 ?   -4.9   4.7       2.3   2.4e+03     391     531 ..     525     683 ..     489     700 .. 0.50
   3 !   25.0   0.0   2.1e-09   2.1e-06      91     163 ..     787     859 ..     765     921 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00015
    TIGR01628  42 LgYaYvNfqnladAerAldtlnyknlkgkpiRlmwsqRd 80 
                  + Y+ + ++  +dA rA+ +ln   l gk++Rl w + d
  MMETSP1174-20130828|15478_1 246 MLYGIATYKTSHDAARAIAELNGCPLSGKQLRLRWDRVD 284
                  669999****************************98765 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 2.3
    TIGR01628 391 vigaanisgrh.qaaqqqavvtqavkqqlasqplnfkinqmmlstqnps..kpeapnalaqlaqqr....lqaqgr....rnlnnrnrnvlgnm..nkkqqnaaskanqanvkaqpq..aqsknqmqqvvqdnn.lpqkqatksn......nkestltaaala 531
                  +  +a i  ++ q+ +q++ ++ + k +++s+p +++     lst +     p +p  +   +  r         +    r+ ++r+ +  ++   +    + ++++++++ +++ +   q+++q ++v ++++  p+++++ ++      +++++    + +
  MMETSP1174-20130828|15478_1 525 MDDSAPIDDVNeQSVDQPQTTGDGDKPVYESNPTVNSAIDAALSTAQSYddVPPEPRQYDDRSPSRrsndI----EpsvnREEEEREPSPHKSAsnASIDGDSVTREDESEKRYEEEepEQEETQWSPVHEGESkEPNEDTSLNHdmndmnQRDERDEHDQNN 683
                  33344355555588899999999999999999988885555444444442344456656555555533221....1222222222222222222111222334444444444444444466666777777776632232222222222222333333334444 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 2.1e-09
    TIGR01628  91 ifvKnLdksidnkaLfdtF.skfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgk 163
                  + vKnL   + +  +   F  + G ++ + +  +e+G+S+g+ fv+f+ +++ ++A+ +lN + l+d+e++v +
  MMETSP1174-20130828|15478_1 787 VHVKNLAYRLSEVDIERFFgDRCGGVIRVDLKREESGRSRGFCFVEFDSNQAVDAAL-RLNKTCLEDREIIVSR 859
                  444444444444444444422344444444444444444444444444444333333.3444444444444444 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00011      0.11      38      81 ..     237     282 ..     198     290 .. 0.71
   2 !    6.1   0.0    0.0015       1.5     269     342 ..     784     857 ..     753     870 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
    TIGR01661  38 dkvt..GqslGyGfvnyvreedaekavnslnGlrlqnktikvsyar 81 
                  dkv+    ++ yG   y   +da +a++ lnG  l  k +++ + r
  MMETSP1174-20130828|15478_1 237 DKVQqgHYTMLYGIATYKTSHDAARAIAELNGCPLSGKQLRLRWDR 282
                  77764234688************************99999887766 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0015
    TIGR01661 269 gycifvynlspdtdeavl.qlfgp.fGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                     + v nl+    e  + ++fg+  G v  v + r+  + + +G++fv     ++a+ a l ln + l +r + v
  MMETSP1174-20130828|15478_1 784 SPGVHVKNLAYRLSEVDIeRFFGDrCGGVIRVDLKREE-SGRSRGFCFVEFDS-NQAVDAALRLNKTCLEDREIIV 857
                  44556666666555544435665325677777766665.66777777776643.5566666677777777766655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.9      0.62   6.4e+02      42     100 ..      64     121 ..      60     139 .. 0.62
   2 ?  -11.7   9.7         4   4.1e+03      20      57 ..     157     198 ..     125     214 .. 0.53
   3 !   10.1   0.0   4.2e-05     0.043     435     494 ..     214     275 ..     209     284 .. 0.77
   4 ?   -9.3  25.2         4   4.1e+03      19     108 ..     332     428 ..     314     443 .. 0.49
   5 ?   -9.4   9.8         4   4.1e+03      19     102 ..     591     682 ..     575     702 .. 0.51
   6 ?   -3.6   4.8       0.6   6.2e+02      65     111 ..     740     784 ..     729     798 .. 0.59
   7 !    9.3   0.0   7.5e-05     0.077     300     371 ..     788     858 ..     781     905 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.62
    TIGR01642  42 rrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrss 100
                  r+rsr  ++ d d+    sr + s e+d + +SR+    rs +    ++++ ++  +s+
  MMETSP1174-20130828|15478_1  64 RKRSRS-NNFDNDEPPPSSRGRFSHEDDPNVKSRHDGSFRSEDNYPTNQNHAGNFPTSN 121
                  333332.2344455555666666777777778888777777777666666666655555 PP

  == domain 2    score: -11.7 bits;  conditional E-value: 4
    TIGR01642  20 skeRsRkRsrdr.srdRdRdrr...drrrsrrkdsRdRdrrr 57 
                    eR R   rd+ ++ RdR+       +   ++d+R R   +
  MMETSP1174-20130828|15478_1 157 PPERYRSDYRDNhNDYRDRHETdwpLGEERMQHDDRRRASAE 198
                  334444444443133455555422212223334444444333 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 4.2e-05
    TIGR01642 435 edvkeeaskyGtlkniviPrpnkdrseteGvGKvF..leyadvasaekAreelnGrkFekrv 494
                  +dv e  sk Gtl++ +iPr+  d+++      ++    y   ++a +A  elnG+   +++
  MMETSP1174-20130828|15478_1 214 RDVEERLSKIGTLVDFQIPRSALDKVQQGHYTMLYgiATYKTSHDAARAIAELNGCPLSGKQ 275
                  68999999999999999999988887655555544335788888899999999999777665 PP

  == domain 4    score: -9.3 bits;  conditional E-value: 4
    TIGR01642  19 kskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.......rrrSRdrirrrsrsss..s.eskerrrsrkrsssnekkkdd 108
                  + +eR  +R+rdr++d +R r   +  rr d+R+ ++ + ++r     ++ds       r+ SR r+ +++ + +  s     +  + +rs+  +++ dd
  MMETSP1174-20130828|15478_1 332 REEERWHDRQRDRHDDQSRSRD--EDDRRGDDRHGNNNNSNQRTDGGGDYDSrndegnsRGGSRRRTASEDGDDDarSaAGSYHDDGGNRSPAGSWR-DD 428
                  3344444444444444444444..3344666666666666666655555555555333355555444433322220010122233445667777777.43 PP

  == domain 5    score: -9.4 bits;  conditional E-value: 4
    TIGR01642  19 kskeRsRkRsr.drsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.......rrrSRdrirrrsrsssseskerrrsrkrsssn 102
                  +s++ +   +r +++r+ + ++   + s   ds  R+  +++ ++ ++ e++        ++ S+++++  s + + +  ++r +r+   +n
  MMETSP1174-20130828|15478_1 591 RSNDIEPSVNReEEEREPSPHKSASNASIDGDSVTREDESEKRYEEEEPEQEEtqwspvhEGESKEPNEDTSLNHDMNDMNQRDERDEHDQN 682
                  22222222222022333344444444555555555544444333333333222334555566666666666666666666666666655555 PP

  == domain 6    score: -3.6 bits;  conditional E-value: 0.6
    TIGR01642  65 sleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkr 111
                  s+ +d   rSRd  +r s s+ + +    ++r+ ss ++ + d+ ++
  MMETSP1174-20130828|15478_1 740 SDCDDRINRSRDG-DRHSSSRGRSESSGGGQRRPSSNHDAR-DSTVS 784
                  5556666677776.455555555555555555555555555.55555 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 7.5e-05
    TIGR01642 300 yignLPldlkddqvkeLLesFGdLkaFnl...iKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  +++nL + l ++ +      FGd  +  +   +K  + G s+G++F+e++     d A+  Ln   l d+ + v 
  MMETSP1174-20130828|15478_1 788 HVKNLAYRLSEVDIERF---FGDRCGGVIrvdLKREESGRSRGFCFVEFDSNQAVDAAL-RLNKTCLEDREIIVS 858
                  67888888888877755...55544433322348889************8777777665.477777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.97u 0.17s 00:00:01.13 Elapsed: 00:00:00.93
# Mc/sec: 1324.15
//
Query:       MMETSP1174-20130828|15486_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 466.17
//
Query:       MMETSP1174-20130828|15488_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 205.90
//
Query:       MMETSP1174-20130828|15490_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|15499_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 548.49
//
Query:       MMETSP1174-20130828|15501_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.66
# Mc/sec: 213.98
//
Query:       MMETSP1174-20130828|15503_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   10.9   3.6       0.91    7.4   0.1    2.1  2  TIGR02574 stabl_TIGR02574: putative addiction module component, TIGR02574 family


Domain annotation for each model (and alignments):
>> TIGR02574  stabl_TIGR02574: putative addiction module component, TIGR02574 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00022      0.91      32      48 ..      10      26 ..       3      43 .. 0.82
   2 ?    5.1   0.5    0.0012       4.8      32      44 ..      51      63 ..      36      65 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00022
    TIGR02574 32 eaqkaELerRladykad 48
                 e+ k E+ rRla+ + +
  MMETSP1174-20130828|15503_1 10 EEAKREMLRRLAEVDYG 26
                 7899********98866 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0012
    TIGR02574 32 eaqkaELerRlad 44
                 e  k EL rRl++
  MMETSP1174-20130828|15503_1 51 EDAKRELLRRLEE 63
                 67799******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 259.98
//
Query:       MMETSP1174-20130828|15507_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.90
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|15506_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.79
# Mc/sec: 392.63
//
Query:       MMETSP1174-20130828|15500_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-06   22.4   0.2     0.0034   13.9   0.0    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.1e-05   21.3   0.4    6.6e-05   20.2   0.1    1.6  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00031   17.4   0.9     0.0038   13.8   0.1    2.2  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0011   15.5   0.7     0.0018   14.8   0.5    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
     0.0015   15.2   0.5     0.0043   13.8   0.1    1.9  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0024   14.2   1.6     0.0072   12.6   0.2    2.0  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
  ------ inclusion threshold ------
      0.013   11.4   1.1       0.14    8.0   0.1    2.1  2  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.023   11.1   0.1      0.041   10.3   0.1    1.3  1  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
      0.025    9.8   0.0      0.037    9.2   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0013      0.59       9      36 ..       1      29 [.       1      46 [. 0.86
   2 !   13.9   0.0   7.5e-06    0.0034      84     154 ..     110     180 ..      78     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0013
    TIGR01350  9 gGpgGYvaAiraaqlglkvalvek.eklG 36
                 +Gp+G  aA + a++g  v++ve+ + +G
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVERgQPVG 29
                 7**********************944444 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 7.5e-06
    TIGR01350  84 kekvvkklvgGvkaLlkkn.kvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleede 154
                  k+  +  +++Gv++L+    +  vi G++++++ k v+v++ + +++l +k++i+A G + rel + l+e++
  MMETSP1174-20130828|15500_1 110 KNMRIGLIEKGVHFLFGTRlEGLVIGGNGTIEGVKVVNVSSAA-AEVLPTKSVILAAGHSARELYGVLDEAG 180
                  5666777899*****965425668899*************998.56******************99877766 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.4e-07   6.6e-05       6      50 ..       1      45 [.       1      51 [. 0.90
   2 ?   -2.8   0.0       1.4   6.4e+02     220     263 ..     118     167 ..     106     181 .. 0.62

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.4e-07
    TIGR03467  6 gGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiD 50
                 +G AGL AA+eLa+aGv+vt++E+++ +G R r +    +++++D
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVERGQPVGLRGRNIGALMRRRVLD 45
                 799**************************9999888877777777 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.4
    TIGR03467 220 srggevrlgtrvreleasaggiralve......aaeetlaadavvlAvpp 263
                  ++g+++ +gtr++ l + ++g    v+      aa+e l+ + v+lA+ +
  MMETSP1174-20130828|15500_1 118 EKGVHFLFGTRLEGLVIGGNGTIEGVKvvnvssAAAEVLPTKSVILAAGH 167
                  66777777777777777666543222211222356666888888888654 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.032        15       7      36 ..       1      29 [.       1      39 [. 0.89
   2 !   13.8   0.1   8.3e-06    0.0038     130     190 ..     106     167 ..      62     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.032
    TIGR01813  7 sGlAGlsaaleakkaglaevvvleKapviG 36
                 +G AGl aale+ +ag  +v ++e+ + +G
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAG-VPVTIVERGQPVG 29
                 699*************.9999999977666 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.3e-06
    TIGR01813 130 aeivqklskkakkegvelrlnskvedlikddqgqvtGvkvke.kgkkikikaakaVvlatGG 190
                   +i ++++  + ++gv++   ++ e l+ + +g++ Gvkv + ++   ++   k+V+la G 
  MMETSP1174-20130828|15500_1 106 IQILKNMRIGLIEKGVHFLFGTRLEGLVIGGNGTIEGVKVVNvSSAAAEVLPTKSVILAAGH 167
                  578899999999**************************9988577888999********995 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.5   4.1e-06    0.0018       6      38 ..       1      33 [.       1      37 [. 0.91

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-06
    TIGR02734  6 aGlgGLAlAirLaaaGievtvlekrdkpGGRag 38
                 aG +GL +A+ La aG++vt++e+ + +G R  
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVERGQPVGLRGR 33
                 8*************************9997765 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   9.4e-06    0.0043       6      34 ..       1      29 [.       1      33 [. 0.94
   2 ?   -1.7   0.0      0.46   2.1e+02     139     176 ..     146     177 ..     104     199 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.4e-06
    TIGR00275  6 gGaaGlmaAitaaeegakVlllEknkkig 34
                 +G+aGl+aA+++ae+g  V+++E+ + +g
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVERGQPVG 29
                 7**********************998876 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.46
    TIGR00275 139 fevet.ekkeleakkvilatGgksypklGstgsgyelae 176
                  ++v++  ++ l +k+vila G ++        + y +++
  MMETSP1174-20130828|15500_1 146 VNVSSaAAEVLPTKSVILAAGHSA-------RELYGVLD 177
                  555555677888899999999843.......33344444 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.082        38       7      30 ..       1      24 [.       1      30 [. 0.88
   2 !   12.6   0.2   1.6e-05    0.0072     132     227 ..     109     207 ..     100     210 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.082
    TIGR01812  7 aGlAGlraAveaakkglkvavisk 30
                 aG AGl aA+e+a++g+ v ++ +
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVER 24
                 799*************99999876 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.6e-05
    TIGR01812 132 lhtlyeellklgveifeeyfvldlile.dkevkGvvaidlktgevvvlrakavvlatGGagr.vyktttna.vivtGdGlaialragvplkdmEfvqfH 227
                  l+++   l+++gv+++  + +  l++  +++++Gv +++++    +vl +k+v+la+G ++r +y    +a v +   G a+ +r   p + ++ +q+H
  MMETSP1174-20130828|15500_1 109 LKNMRIGLIEKGVHFLFGTRLEGLVIGgNGTIEGVKVVNVSSAAAEVLPTKSVILAAGHSAReLYGVLDEAgVSMASKGFAVGFRVEHPQSVINDIQYH 207
                  555555567789999999999999999788****************************99986888655541667889999999999999999999998 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.021       9.7      10      33 ..       1      24 [.       1      30 [. 0.89
   2 ?    8.0   0.1   0.00031      0.14     147     236 ..     115     207 ..     101     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.021
    TIGR01816 10 aGGaGlraalelakeglktavvtk 33
                 aG aGl aalela++g+ +++v +
  MMETSP1174-20130828|15500_1  1 AGPAGLFAALELAEAGVPVTIVER 24
                 799**************9999865 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00031
    TIGR01816 147 qslkadtsffveyfaldlile.dgevrGvialeletGeihvfrakavvlatGGaGr.iyasttnaltl.tGdgvgivlraGlPlqdlefvqfh 236
                    + ++++f+       l++  +g++ Gv  +++ +    v+ +k+v+la+G + r +y +  +a ++ +  g ++ +r   P   ++ +q+h
  MMETSP1174-20130828|15500_1 115 GLIEKGVHFLFGTRLEGLVIGgNGTIEGVKVVNVSSAAAEVLPTKSVILAAGHSAReLYGVLDEAGVSmASKGFAVGFRVEHPQSVINDIQYH 207
                  5567788888888888999988*******************************9994577777776541567888888888887766666666 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1     9e-05     0.041     162     231 ..     136     207 ..     127     210 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9e-05
    TIGR01176 162 ddgrvrglvaielaegelvtikadavvlatggagr.vyrfntnggiv.tgdgmalalragvplrdmefvqyh 231
                   +g ++g+  ++++    + + +++v+la+g + r +y +  ++g+  +  g+a+ +r   p   ++ +qyh
  MMETSP1174-20130828|15500_1 136 GNGTIEGVKVVNVSSAAAEVLPTKSVILAAGHSAReLYGVLDEAGVSmASKGFAVGFRVEHPQSVINDIQYH 207
                  5899***************************98875799999998862679********************9 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0     8e-05     0.037     545     571 ..       1      27 [.       1      52 [. 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 8e-05
    TIGR03315 545 aGPaGlsagyflaraGlpvtvfekkek 571
                  aGPaGl a++ la aG+pvt++e+ + 
  MMETSP1174-20130828|15500_1   1 AGPAGLFAALELAEAGVPVTIVERGQP 27 
                  8**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.63
# Mc/sec: 1089.43
//
Query:       MMETSP1174-20130828|15511_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1174-20130828|15508_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   35.6   0.0      3e-09   34.4   0.0    1.5  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase


Domain annotation for each model (and alignments):
>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.2e-13     3e-09      42     298 ..      85     378 ..      66     384 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 7.2e-13
    TIGR00745  42 Lsisklege...eekkvpveaaedpetls.kaDlllvtvKayqteealakllpyigkntv..vlllqNGlgneeklrellpe...rkvllGvvthgaareepgvvhhagegktkigklpgeekeealeelaellkeagleaeltedilaalwkKllvNaaiNpltalldcknGelleneearelleslidEvvqvaraegveladdlveevlravkrmtaens................................sSMlqDllrgrrtEidainGavvklAeklgldaPvlellyall 298
                  ++++  +g+    +++++++ +++ e++  k ++++v+v  ++t+  ++kl + + k+ +  v ++q G++n + ++ ++      ++ +G   h ++  ++gv +  + g++ ++ l+ e++ +  ++ + ll +++++  + + + +  w  ++  + + +  al +  + + l++++ r + +++i+E++++++a++     ++ +e   a ++  + n                                 s M+ Dl + r+t +     +++k + k+++d+P+++ + ++l
  MMETSP1174-20130828|15508_1  85 IHVKPFKGKqtsLREEIDFQPSAKFEEAIvKSQVVVVCVHPLDTHACAEKLGKVLPKDQNigVFTIQHGVKNFDVMHRSIEGtgnISFDGGAAIHVVKDPADGVLRCLAPGQLLVERLSREKA-DWGNKYMNLLATTEIPLLYRKVLTTHTWGSMVHDV-YLASNALTGGSVRSHLSSRKNRLVYAQMIRECLEAFKAAAGLD--KEGKESKWAPDNSGSSNIaltllelvlclptplylllivcfdalpaqrvgSPMQTDLHERRQTNVSWTIVEICKVGVKYKVDMPACNYVRDQL 378
                  444444444444566777788888888889*********************99998766622789************9996676567778999**99999******************99876.999**************************888776.7777888899999999999******************555553..33444444444444444455666666667777778888888888888999************************************8776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.67
# Mc/sec: 874.67
//
Query:       MMETSP1174-20130828|15509_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-97  323.6   0.0    2.2e-97  323.1   0.0    1.2  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    1.4e-16   58.3   0.0    4.3e-12   43.7   0.0    2.2  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    1.2e-10   39.0   0.2      2e-09   35.0   0.0    2.2  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    1.6e-05   22.7   0.0    3.7e-05   21.5   0.0    1.5  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.1   0.0  2.2e-100   2.2e-97       2     243 ..      41     291 ..      40     293 .. 0.96

  Alignments for each domain:
  == domain 1    score: 323.1 bits;  conditional E-value: 2.2e-100
    TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpvkk.........kylgdeeavaaaaeavanq 243
                   +v++rhG+s Wn+  lftGW dvel+  Gk+ea+++++ + +e+l+ dvaytsllkra +tl i+l  + q+ +pv+  Wrlner yG l+Gl+k+etaekyG eqvk+wrrs+d++Ppe+++++++ p +d++ya++++ ++Pl+e+lkdtv+r lPywe ei+p+l+ gk+vl++ahGns+r++vk+l+++ +++i +l+iPt++Plvy+ld++l+p+k+         ++l d+e++a+  +ava+q
  MMETSP1174-20130828|15509_1  41 TVVFLRHGQSVWNEASLFTGWADVELTTLGKNEAAKGATQMWQEGLKIDVAYTSLLKRAQQTLDIALTITGQEDVPVHYDWRLNERMYGGLTGLNKKETAEKYGPEQVKLWRRSYDIPPPEIKKDSPYWPGNDNKYAHIDEADIPLSECLKDTVDRCLPYWEGEIVPALQRGKTVLVAAHGNSIRGMVKYLDNIHEDAITDLEIPTAVPLVYHLDANLQPMKNeravaplsgYFLVDPEELAKLQAAVAAQ 291
                  589**********************************************************************************************************************************************************************************************************************9988753344444336899*******99999998 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   4.2e-15   4.3e-12       1     109 [.      42     157 ..      42     164 .. 0.88
   2 !   12.6   0.0   1.5e-05     0.015     103     170 ..     176     246 ..     161     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 4.2e-15
    TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrel...AellaeklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaha 109
                  ++++RHg+  +n+   + G +Dv+L+  g+++aa+ ++++  e  k+d  ++S l+R++++   A ++  ++++p+++d rL+E  +G   g + +e  eky  e  + +++  ++
  MMETSP1174-20130828|15509_1  42 VVFLRHGQSVWNEASLFtGWADVELTTLGKNEAAKGATQMwqEGLKIDVAYTSLLKRAQQTldiALTITGQEDVPVHYDWRLNERMYGGLTGLNKKETAEKYGpEQVKLWRRSYDI 157
                  689******************************999988878999**************8744477899*********************************88666655555555 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.5e-05
    TIGR03162 103 akdlaharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsievey 170
                  ++ + +a +p  E ++d + R+   +e  +     ++++vl+ +Hg  ir ++ +l +++ ++++++e+++
  MMETSP1174-20130828|15509_1 176 YAHIDEADIPLSECLKDTVDRCLPYWEGEIVPalqRGKTVLVAAHGNSIRGMVKYLDNIHEDAITDLEIPT 246
                  56788899999***************965544488999********************9999998888765 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   1.9e-12     2e-09       1      95 [.      41     139 ..      41     151 .. 0.87
   2 ?    1.7   0.0     0.032        32     134     176 ..     202     244 ..     177     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.9e-12
    TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelkeL 95 
                  tv+++rhg+s  n a +++G+++ veL+  G++ aa+ a+++  ++l+i+  ++s l+r+++t++  ++ +    ++v+ d rl+e  YG  tG + ke 
  MMETSP1174-20130828|15509_1  41 TVVFLRHGQSVWNEASLFTGWAD-VELTTLGKNEAAKGATQMwqEGLKIDVAYTSLLKRAQQTLDIALTITgqeDVPVHYDWRLNERMYGGLTGLNKKET 139
                  89*******************97.************9998874468*****************9976665533378899**************9877665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.032
    TIGR03848 134 darleeehgpdavwvavshgDviksvladalGlhlDlfqriev 176
                  + ++    +++++ ++ +hg+ i+ ++ +   +h D    +e+
  MMETSP1174-20130828|15509_1 202 EGEIVPALQRGKTVLVAAHGNSIRGMVKYLDNIHEDAITDLEI 244
                  55555666778889999**********9999999999888877 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.6e-08   3.7e-05       5      63 ..      44     106 ..      41     118 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.6e-08
    TIGR00249   5 lmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeiv 63 
                   +rHG+   ++a       + +Lt+ Gk+ea + a  + ++g ++d  ++S l RA+qt++i 
  MMETSP1174-20130828|15509_1  44 FLRHGQSVWNEAslftGWADVELTTLGKNEAAKGATQMWQEGLKIDVAYTSLLKRAQQTLDIA 106
                  5799999888885554457889**************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|15512_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1422.25
//
Query:       MMETSP1174-20130828|15524_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 281.01
//
Query:       MMETSP1174-20130828|15528_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.62
# Mc/sec: 415.13
//
Query:       MMETSP1174-20130828|15531_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 242.98
//
Query:       MMETSP1174-20130828|15537_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-18   63.6   0.0    4.7e-18   63.3   0.0    1.0  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
      0.003   14.6   0.0      0.004   14.2   0.0    1.1  1  TIGR03069 PS_II_S4: photosystem II S4 domain protein


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   2.3e-21   4.7e-18       5     114 ..      16     124 ..      12     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 2.3e-21
    TIGR00005   5 gqrldevlaselkdlsrskikklieegqVkvnkkkvtanlklkikdgdlvtveveeeeeaevpvedkp..ldilfeDedilvidKPsglvvhptggyekntvlnallahlke 114
                  + r+d ++++ l  + rs+++k+ + g + v+   ++ ++++k+++g++vt + +e  + +v +ed     + lfeDe ++v+dKPsg+++hp+gg  ++t++n ll+hl +
  MMETSP1174-20130828|15537_1  16 DVRIDAWVSKHLG-ITRSRVSKAAKAGMILVD--GKPCKPSFKLRAGQTVTYQDAETPALKVSPEDLRlcDHSLFEDEWLIVLDKPSGMATHPAGGLVSGTLVNGLLYHLDQ 124
                  6799******999.******************..4555568**********5555556777777777777789************************************985 PP

>> TIGR03069  PS_II_S4: photosystem II S4 domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-06     0.004     183     234 ..      16      66 ..       8      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-06
    TIGR03069 183 slRiDAiasAGFglsRskiveqikegelrlnwktvtkaskelkvGDrlqleg 234
                   +RiDA  s   g+ Rs++ ++ k+g++ +++k+  k+s +l++G  +++++
  MMETSP1174-20130828|15537_1  16 DVRIDAWVSKHLGITRSRVSKAAKAGMILVDGKPC-KPSFKLRAGQTVTYQD 66 
                  58******************************997.799*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 639.95
//
Query:       MMETSP1174-20130828|15539_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|15535_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1308.41
//
Query:       MMETSP1174-20130828|15533_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1601.87
//
Query:       MMETSP1174-20130828|15542_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|15543_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 403.10
//
Query:       MMETSP1174-20130828|15545_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1174-20130828|15540_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 819.93
//
Query:       MMETSP1174-20130828|15544_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1039.82
//
Query:       MMETSP1174-20130828|15549_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 444.99
//
Query:       MMETSP1174-20130828|15558_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|15567_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|15570_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.64
# Mc/sec: 125.80
//
Query:       MMETSP1174-20130828|15569_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1174-20130828|15573_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|15576_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-40  134.7   0.0      8e-40  134.5   0.0    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    4.9e-37  125.7   0.0    5.9e-37  125.4   0.0    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    1.1e-33  114.4   0.0    1.3e-33  114.1   0.0    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    2.2e-32  110.3   0.0    2.6e-32  110.1   0.0    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
      6e-31  105.4   0.0      7e-31  105.2   0.0    1.0  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    3.4e-29   99.6   0.0    4.1e-29   99.3   0.0    1.0  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    2.2e-25   87.3   0.0    2.8e-25   86.9   0.0    1.0  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    2.5e-17   60.2   0.0      3e-17   59.9   0.0    1.0  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    6.3e-15   52.6   0.0    7.1e-15   52.5   0.0    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    2.4e-14   50.8   0.0      3e-14   50.5   0.0    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    5.7e-14   49.4   0.0    6.6e-14   49.2   0.0    1.0  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    3.5e-12   43.4   0.0    4.6e-12   43.0   0.0    1.1  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    4.7e-06   23.5   0.0    0.00013   18.8   0.0    2.0  2  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   2.5e-42     8e-40     267     467 .]       5     201 ..       2     201 .. 0.97

  Alignments for each domain:
  == domain 1    score: 134.5 bits;  conditional E-value: 2.5e-42
    TIGR01804 267 anffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGrengvaaleeytevk 467
                  +++++aGq c +  r++v++++++ f+++l + ++++ +G++ d++t lGPl   ++ + ++  ++ + + ga + +GG+ + +       f+ Ptv++  +++m ++ +e fGP++ v++  s+ee+++  nd+e+Gl+agv+++d +rae + +r++ Gt + n  + +   +P+ G + sG+G  ++ +++e +t+ k
  MMETSP1174-20130828|15576_1   5 GAMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELLPDMP----RFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPYLPWSGRQGSGVGVTLSTMGIEAFTQCK 201
                  679*************************************************99999999999*****************987665....8***********************************************************************************************************987 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.9e-39   5.9e-37     254     448 .]       8     201 ..       4     201 .. 0.98

  Alignments for each domain:
  == domain 1    score: 125.4 bits;  conditional E-value: 1.9e-39
    TIGR01780 254 rnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglisevvipfGGvkesGlGregskyGieeylevk 448
                   nagq c   +r+yvhe v+d+f+k l+++ + l +G+  d+++  Gpl   +  + ++ +++dav+kGa + +gG +     + f+ Ptv+s ++++m ++ +e+fGP++ v+k  + ee+va  nd+e+Gl+a ++s+d ++   +   ++ G   +n     +   p+ G + sG+G   s +Gie +++ k
  MMETSP1174-20130828|15576_1   8 YNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGG-ELLPDMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPYLPWSGRQGSGVGVTLSTMGIEAFTQCK 201
                  599*************************************************************************.888889******************************************************************************99999*************************9876 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.0   4.1e-36   1.3e-33     273     476 ..       9     205 ..       5     207 .] 0.96

  Alignments for each domain:
  == domain 1    score: 114.1 bits;  conditional E-value: 4.1e-36
    TIGR02299 273 lnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGigreGGdysfdfytetknvav 476
                  + G+ c +  r++v+e++++dfv++l++ ++a+ +G+P d++t +GPl  ++  + +++ ++ a  +Ga i +Gg+ +++         ++  Ptv+  ad +m +  +e fGP++ v+   ++eea+   nd e+Gl++ vw++d +ra  + a++++G  y n  +      P+ G + sG+g    +   + +t+ k  ++
  MMETSP1174-20130828|15576_1   9 NAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELLPD-------MPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPYLPWSGRQGSGVGVTLSTMGIEAFTQCKAYHL 205
                  579*************************************************************************9998.......66899**************************************************************************99999999**********************99998765 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   8.3e-35   2.6e-32     272     466 ..       7     200 ..       3     206 .. 0.95

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 8.3e-35
    TIGR03374 272 fynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgygkdmslygledytvv 466
                  +ynagq c +  riy+  +++d++v++l +a  +l +g+p+d +t lgpl+  ++ + +++ v++a + +   +  gge       ++ pt+++ a    +++  e fgp+v +     +e+ v   nds++gl++ vw++d  ra  + ar++ g ++ n    +   +p  g++ sg g  +s  g+e +t  
  MMETSP1174-20130828|15576_1   7 MYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGA-AIHCGGELLPDMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPYLPWSGRQGSGVGVTLSTMGIEAFTQC 200
                  7***************************************************************9987764.6789***********************9*****************99999999***************************************9999***********************9976 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   2.2e-33     7e-31     273     475 ..       4     201 ..       1     206 [. 0.92

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 2.2e-33
    TIGR03216 273 rsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGG.vpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiGreGGvhslefytelk 475
                  + a+ n+Gq c + er+yv+  ++d fv+al+++a++l +G p+d+++ lGpl   +  + + +  + av++Ga ++ GG  +p+++       +  pt+ +  +++   + +e fGp+  v+   s+ee++a +nd+++Gl+a vw++d +ra  + ++++ G ++ n+        p+ G + sG+G    +  +e +t+ k
  MMETSP1174-20130828|15576_1   4 DGAMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGElLPDMPR------FYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPYLPWSGRQGSGVGVTLSTMGIEAFTQCK 201
                  56889************************************************988887778899**************983588885......889**********************************************************************9*99888889999********9888888777777665 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.3e-31   4.1e-29     269     470 ..       3     205 ..       1     206 [. 0.92

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1.3e-31
    TIGR03250 269 vkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllgnkr...dGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGykeGvqealksftnlktysl 470
                  + G++ n+Gq c +v ri v+e+v d f++ l + +ral +G+p d+++ lG +      k+++ +v++av +Ga + +g +        y+ptv+ r d++++l+ +e+fGp++ v+++ + ++a++  n +++gl++gv + + ++   ++a ++ Gt   w+         p+ G + sG+G     +  + +ft  k+y l
  MMETSP1174-20130828|15576_1   3 ADGAMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELlpdMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTA-YWNCCDRVSPYLPWSGRQGSGVGVTLSTM-GIEAFTQCKAYHL 205
                  57999*************************************************************************998752214578*********************************************************************96.58887766678999********9987654.6889999999876 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   8.9e-28   2.8e-25     307     489 ..       5     186 ..       2     194 .. 0.93

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 8.9e-28
    TIGR01237 307 safGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklv.lggedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtd 489
                  +a+  aGq c ++ r+ v+e v+d++v+ + +a+++l +g+++++++++gp+      + +++ ++ + ++g  +  gge  ++   f  pt+++  d+   l+ +e fGp+v v+++   +ea+   n++e+glt gv s+ ++r e   a  + G  y n  +   +  + p+ G + sG++
  MMETSP1174-20130828|15576_1   5 GAMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIhCGGELLPDMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWN--CCDRVSPYLPWSGRQGSGVG 186
                  677779*********************************************9888777889******9999876515689999*****************************************************************************98..78888889999999999886 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   9.6e-20     3e-17     286     436 ..       8     158 ..       2     170 .. 0.92

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 9.6e-20
    TIGR02278 286 akaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld.GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqfilgl 436
                    aGq c ++ r+ v +a  ++ ++al++  +++ +G+P++ ++ lGpl+   q + ++ +v+  +++ga ++ g++   d   f++Pt++   +  +  +   e+fGP++ ++  ++ +eav      e  l a + + d++ a+ +++ +
  MMETSP1174-20130828|15576_1   8 YNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELLPDmPRFYPPTVVSRADH-TMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARV 158
                  579*************************************************************************99999788999999887665.5556677*****************************************9988765 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   2.2e-17   7.1e-15     269     471 ..       5     201 ..       1     206 [. 0.89

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 2.2e-17
    TIGR01722 269 aavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdlhiyGkqGvrfytrlk 471
                   a+  aGq c ++  + +  a+ +++v+ + ++a+ + +g  +dp++ lGpl  +++ + ++  +++++ +Ga +   G  +     +  +f  +t+++r   +m    +e fGp++ v+++ + eea++ +n+s +G  + ++++d   a     +++ G    n    v  p+  ++G ++s  G +      G++ +t+ k
  MMETSP1174-20130828|15576_1   5 GAMYNAGQSCCSVERIYVHEAVhDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELLP----DMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVS-PYLPWSGRQGSGVGVT--LSTMGIEAFTQCK 201
                  466789*******998887887899**************************************************99987664....4568**********************************************************************99999887774.8888888888877754..4566777777766 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   9.4e-17     3e-14     267     429 ..       6     167 ..       2     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 9.4e-17
    TIGR03240 267 afisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaalltpgiidvtev.aevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnk 429
                  a+  aGq c    r+ v++ a  d ++++l++ a++l +g+  ++p+ +lG++      k l    ++++ +g++     + l     +  p+++  ++   ++  +e fgp++ v+++ + +ea+a  n+++fGl+aG+ s d+++ + +l ++ +G   wn 
  MMETSP1174-20130828|15576_1   6 AMYNAGQSCCSVERIYVHE-AVHDDFVKALTDAARALPMGNP-NDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHCGGELLPDMPRFYPPTVVSRADHtMDLMVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNC 167
                  7789************986.56688**************996.57999****976666655555557788888888888899999999*******987653799999*******************************************************95 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.1e-16   6.6e-14     309     465 ..       5     156 ..       2     186 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.1e-16
    TIGR01236 309 gafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaek 465
                  ga+   Gq c ++ r+yv +++ +++ ++l + ++ + +g+++d ++++g++    + + ++  +++a ++     i  GG+       f  Ptvv   d + +lm+ e fGP++ v     d+ + +  + d  s+++lt  v ++d++  e+   
  MMETSP1174-20130828|15576_1   5 GAMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKG--AAIHCGGELLPDMPRFYPPTVVSRADHTMDLMVDESFGPIVGVMKVGSDE-EAVAGMND--SEFGLTAGVWSRDQKRAESILA 156
                  566678**********************************************999999999999****9966..7899*****99999*****************************9877664.45666644..79***********987655443 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.5e-14   4.6e-12     298     482 ..       6     185 ..       2     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.5e-14
    TIGR01238 298 afdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfeldd..ldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGt 482
                  a+  aGq c ++  ++v e v d  ++ +  a   l +g+p+  +t +Gp+      + l+  ++   +k+  ++      +   +   f +pt++   d  +d +  e fGp++ v++  +de  + v  +n++ +glt Gv sr ++    i  r++ G  y n      v    p+ G+  sG 
  MMETSP1174-20130828|15576_1   6 AMYNAGQSCCSVERIYVHEAVHDDFVKALTDAARALPMGNPNDPNTYLGPLALPSQPKFLQGQVDDAVSKGAAIHC---GGELLPDMPRFYPPTVVSRADhtMDLMVDESFGPIVGVMKVGSDE--EAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNC--CDRVSPYLPWSGRQGSGV 185
                  7789*******9999***********************************99888888888889888777777664...4445677899*****99764423777899**********999987..6799**********************************874..444555555555555555 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.026       8.2     241     269 ..      10      38 ..       2      44 .. 0.85
   2 !   18.8   0.0     4e-07   0.00013     301     385 ..     108     196 ..      60     199 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.026
    TIGR00407 241 rPstCnaietLLvnkaiaeefleeLekql 269
                     +C ++e + v++a+ ++f+++L+++ 
  MMETSP1174-20130828|15576_1  10 AGQSCCSVERIYVHEAVHDDFVKALTDAA 38 
                  55689********************9875 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 4e-07
    TIGR00407 301 fdkeflsldLsvkivedleeaiehirqygtkhsdailtedkknaekfvkevdsaavyvnastrfad....GfrfGfGaevgistqklha 385
                  + +e   +++ v  v + eea++ +++     + ++ ++d+k ae  + +v+s + y+n+  r +      +r G G  v++st  ++a
  MMETSP1174-20130828|15576_1 108 MVDESFGPIVGVMKVGSDEEAVAGMNDSEFGLTAGVWSRDQKRAESILARVNSGTAYWNCCDRVSPylpwSGRQGSGVGVTLSTMGIEA 196
                  445666778889999999*******************************************9987533336888999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 505.96
//
Query:       MMETSP1174-20130828|15574_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1180.77
//
Query:       MMETSP1174-20130828|15577_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1028.29
//
Query:       MMETSP1174-20130828|15581_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|15575_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.70
# Mc/sec: 1423.60
//
Query:       MMETSP1174-20130828|15582_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 257.03
//
Query:       MMETSP1174-20130828|15580_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 826.67
//
Query:       MMETSP1174-20130828|15584_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.86
# Mc/sec: 85.95
//
Query:       MMETSP1174-20130828|15585_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.53
# Mc/sec: 1387.13
//
Query:       MMETSP1174-20130828|15594_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   13.8   0.0      0.012   13.2   0.0    1.2  1  TIGR02947 SigH_actino: RNA polymerase sigma-70 factor, TIGR02947 family


Domain annotation for each model (and alignments):
>> TIGR02947  SigH_actino: RNA polymerase sigma-70 factor, TIGR02947 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.8e-06     0.012      89     170 ..      55     137 ..      40     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-06
    TIGR02947  89 dsdeiedwqlakaash.tssglrsaevealdalpdddikaalqelpeefrlavyladvegfaykeiaeimgtpi.gtvmsrlhr 170
                  ++ + ++w+++  + h  s+g r +  +a  a+ d  +kaa+ +lp  +r+  ++  ++g + +++a+++   i g ++s l r
  MMETSP1174-20130828|15594_1  55 EQSSSNNWKVSIRQTHyGSKGRRQTMEDAHLAMGDASVKAAFPDLPSSMRVE-FYGIMDGHSGRNVADLVKQEIpGYIVSELLR 137
                  4556689**9977776368999999999*********************965.77899***********998886778888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1141.99
//
Query:       MMETSP1174-20130828|15597_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00068   17.3   0.0       0.24    9.2   0.0    2.2  2  TIGR02607 antidote_HigA: addiction module antidote protein, HigA family


Domain annotation for each model (and alignments):
>> TIGR02607  antidote_HigA: addiction module antidote protein, HigA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00037       1.5      53      73 ..       4      24 ..       1      32 [. 0.83
   2 !    9.2   0.0   5.7e-05      0.24      41      73 ..      54      85 ..      31      91 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00037
    TIGR02607 53 lrLakalgtsaefWLnlQaay 73
                   L k+ g+ + +WL+l ++y
  MMETSP1174-20130828|15597_1  4 ALLTKYEGRHPMMWLKLEEKY 24
                 5689999**********9998 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 5.7e-05
    TIGR02607 41 vngraaitadmAlrLakalgtsaefWLnlQaay 73
                 v++ ++++ +++  L k+ g+ + +WL+l ++y
  MMETSP1174-20130828|15597_1 54 VHNPSKVS-EVDALLTKYEGRHPMMWLKLEEKY 85
                 55556665.67777***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 328.19
//
Query:       MMETSP1174-20130828|15602_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.68
# Mc/sec: 238.74
//
Query:       MMETSP1174-20130828|15607_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|15614_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.0   0.1      0.047   10.6   0.1    1.2  1  TIGR00187 ribE: riboflavin synthase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00187  ribE: riboflavin synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.1e-05     0.047      77     110 ..      57      90 ..      37     110 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.1e-05
    TIGR00187  77 kegtaVniEralkadaklgGHfvsGHvdtvaeil 110
                  +eg++ ++  a k +  +gGH+++  v+t+ae++
  MMETSP1174-20130828|15614_1  57 QEGSHLHLGLADKDGHGVGGHLIEATVYTTAEVV 90 
                  3458999999999******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 699.05
//
Query:       MMETSP1174-20130828|15613_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.09    9.7   4.7      0.099    9.6   0.1    2.7  3  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.029   1.2e+02     245     279 ..      42      57 ..      16      70 .. 0.59
   2 ?    9.6   0.1   2.4e-05     0.099     152     240 ..     114     203 ..      99     221 .. 0.77
   3 ?    0.6   0.0     0.013        52      59      85 ..     229     255 ..     219     273 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.029
    TIGR00820 245 giaiGlavsssydeespkAliveGlLnalsaGiLi 279
                  g  +                   G+ na++aG++i
  MMETSP1174-20130828|15613_1  42 GALL-------------------GVSNAIAAGVMI 57 
                  4333...................344444444443 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 2.4e-05
    TIGR00820 152 aedevkee.eeeeqllrqrvvaqvLelGiivHsvviGlslGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffav 240
                  a+d+v+ +  e  ++ + ++v +v+ l   +  v iG+s+G  ++      +   L  H + eGl++   ++     ++  ++ ++f ++
  MMETSP1174-20130828|15613_1 114 AHDHVELDrIEWDNFRKMVLVVLVMTLHSFSEGVAIGVSFGGDSESRLGFFVSLSLAVHNVPEGLAVAIVLLPRGVSKMDSALWSIFTSL 203
                  556666664566788888999999999999999*******987755544455567889********999988888888888777777665 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.013
    TIGR00820  59 FaaGvilatgfvHvlpeafealsspcl 85 
                  FaaG +l  ++  ++p+a   l    +
  MMETSP1174-20130828|15613_1 229 FAAGAMLNVALCELVPDALSGLGRLDI 255
                  9*****************998865444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.65
# Mc/sec: 564.51
//
Query:       MMETSP1174-20130828|15617_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 481.12
//
Query:       MMETSP1174-20130828|15621_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 239.54
//
Query:       MMETSP1174-20130828|15619_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   11.9   4.4       0.12   11.0   3.1    1.5  1  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain
       0.31    9.3   0.0       0.31    9.3   0.0    4.7  6  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   5.9e-05      0.12       9      32 ..     264     288 ..     263     289 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.9e-05
    TIGR01167   9 snslllllGl.lllglaglllrkrk 32 
                  sns+ ++lGl +llgl++lllr rk
  MMETSP1174-20130828|15619_1 264 SNSAWVVLGLlALLGLLFLLLRARK 288
                  68999*****788888888888777 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.9      0.76   1.6e+03       2      33 ..       4      37 ..       3      47 .. 0.71
   2 ?   -1.2   0.0      0.29     6e+02      27      44 ..      48      65 ..      38      79 .. 0.74
   3 ?   -2.9   1.7      0.99     2e+03      26      36 ..     107     117 ..      91     141 .. 0.65
   4 ?   -3.6   2.2       1.6   3.3e+03      24      33 ..     140     149 ..     124     160 .. 0.70
   5 ?   -3.6   2.2       1.6   3.3e+03      24      36 ..     156     168 ..     142     174 .. 0.59
   6 ?    9.3   0.0   0.00015      0.31      19      58 ..     244     283 ..     236     292 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.76
    TIGR04104  2 kCknCkekfsykellkslfsk..kkkikCpnCge 33
                 +C++C + + y     ++ ++   ++  C+ C e
  MMETSP1174-20130828|15619_1  4 TCWSCVYDVCYDCPAGKYSKAgaASESGCSLCDE 37
                 8****99998877665555556666777777766 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.29
    TIGR04104 27 kCpnCgekqyltaksrkk 44
                  C+ Cg  +y +  s + 
  MMETSP1174-20130828|15619_1 48 GCSACGVGNYTSDASDAD 65
                 699999999988887765 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.99
    TIGR04104  26 ikCpnCgekqy 36 
                  + C  Cg+ +y
  MMETSP1174-20130828|15619_1 107 TTCTACGSGKY 117
                  44555555444 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1.6
    TIGR04104  24 kkikCpnCge 33 
                    ++C++C +
  MMETSP1174-20130828|15619_1 140 AATECEKCTS 149
                  5567777765 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 1.6
    TIGR04104  24 kkikCpnCgekqy 36 
                   ++ C++C e +y
  MMETSP1174-20130828|15619_1 156 GSTNCSDCVEGYY 168
                  3456666666555 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 0.00015
    TIGR04104  19 lfskkkkikCpnCgekqyltaksrkksvllllipllllla 58 
                  +++++ +  C+ C+ k+ + ++s+++++ ll + +ll+l 
  MMETSP1174-20130828|15619_1 244 YWRRDASDACSPCSGKHSMLSNSAWVVLGLLALLGLLFLL 283
                  788899999*****************54444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1006.42
//
Query:       MMETSP1174-20130828|15623_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.1   0.1       0.03   11.0   0.0    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA


Domain annotation for each model (and alignments):
>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.3e-06      0.03     294     375 .]       3      77 ..       1      77 [. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.3e-06
    TIGR03812 294 ecmeltrylveelkklglepviePvlnivaleaedleevekklkekgwivsvtrapkalrlvlmphvkkehieefledlkev 375
                  +c+++++yl+e+l   g++  ++ +   v +e    + v++ + +  w++++ +   +  +v+mp v++++++ f+e+++++
  MMETSP1174-20130828|15623_1   3 HCLDTAEYLREKLLVAGISARLNRLSSTVVME----KPVCDAFVK-RWQLACEED--IAHVVVMPNVTRDKVDCFVEEFRQI 77 
                  56666666666666665554444444444444....344444443.488777666..5689****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 514.76
//
Query:       MMETSP1174-20130828|15625_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|15628_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   53.9   0.0      3e-15   53.8   0.0    1.0  1  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   7.3e-19     3e-15      40      91 ..       1      52 [.       1      58 [. 0.96

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 7.3e-19
    TIGR02110 40 PGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpa 91
                 PGLAH+ EH+lFlGt ++++++   +++  +GG+ NA T    t fFF+l  
  MMETSP1174-20130828|15628_1  1 PGLAHFTEHMLFLGTSKYPKEDDYNSFLSTNGGNSNAFTDSEDTCFFFDLNC 52
                 9************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|15624_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-08   28.2   0.0    1.3e-07   27.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0092   13.3   0.0      0.015   12.6   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.2e-11   1.3e-07      53     194 ..      68     197 ..      27     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 6.2e-11
    TIGR03903  53 llFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasv 194
                  + F   +y +   +r+ L  +G+++     + ++  L +l   h++G+vhRD+kP+n+ +   +     ++ DFG+   ++g               + +  Y aPe L g +   +  D++a G ++ e L G++  +G s 
  MMETSP1174-20130828|15624_1  68 VTFVALDYHPEGDVRASLLRNGPMSVRVVRAAIADLLMGLDFLHRRGLVHRDVKPENLFLGEDGIL---RLGDFGLMRKMTGSMT---------P-GMVTLWYRAPEVLLGATnYGPGVDIFAAGAVFGELLVGRPLFKGSSE 197
                  56778888888899**********************************************888765...578***9665555433.........2.33366899***999875257999******************999985 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   7.4e-06     0.015     105     138 ..     109     143 ..      90     152 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.4e-06
    TIGR03724 105 klHkagivhgDlttsNiivkddkl.yliDfGLgkk 138
                   lH+ g+vh D+ ++N+ + +d +  l DfGL +k
  MMETSP1174-20130828|15624_1 109 FLHRRGLVHRDVKPENLFLGEDGIlRLGDFGLMRK 143
                  69*****************766651688***9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 1155.53
//
Query:       MMETSP1174-20130828|15626_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.86
# Mc/sec: 541.77
//
Query:       MMETSP1174-20130828|15629_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|15633_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|15638_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|15641_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|15642_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    7.3  13.6        2.6    6.6   1.2    2.7  2  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.2   0.00062       2.6      49      81 ..      32      61 ..      10      64 .. 0.63
   2 ?    5.4   3.0    0.0015         6      35      76 ..     147     188 ..     140     193 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00062
    TIGR01195 49 akekaaaaAvaavedeedelvaaiaAAvhehkr 81
                 a  + a  A +++ +++   + ai+AA++++k 
  MMETSP1174-20130828|15642_1 32 A--QDAEDAFVKAMKSA-FGLSAITAAIAAYKE 61
                 1..13444555545555.6799********986 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0015
    TIGR01195  35 vvgrkkvkeveakaakek.aaaaAvaavedeedelvaaiaAAv 76 
                  +++++  +++++++++++ aaa  +a+ e +ede++aa  AA+
  MMETSP1174-20130828|15642_1 147 FENEF-TAKAQDEPQEDEkAAAEEKAQDESQEDEKAAAGLAAL 188
                  55666.5555555553331222223334455668888866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 592.60
//
Query:       MMETSP1174-20130828|15639_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1000.56
//
Query:       MMETSP1174-20130828|15643_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 734.74
//
Query:       MMETSP1174-20130828|15645_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1192.16
//
Query:       MMETSP1174-20130828|15647_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|15649_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 319.97
//
Query:       MMETSP1174-20130828|15648_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|15650_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|15652_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 310.02
//
Query:       MMETSP1174-20130828|15651_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   10.4   3.7       0.21    9.3   2.6    1.6  1  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.6   5.1e-05      0.21      20      44 ..     245     269 ..     239     270 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.1e-05
    TIGR03949  20 gvAicvgggaaaaagagftaGaaaG 44 
                   ++ic+++++++aa++ +  Gaa+G
  MMETSP1174-20130828|15651_1 245 LFGICLIAVLGVAAFLKGKPGAAIG 269
                  4567*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.65
# Mc/sec: 564.51
//
Query:       MMETSP1174-20130828|15656_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.45
# Mc/sec: 266.91
//
Query:       MMETSP1174-20130828|15657_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|15662_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.52
# Mc/sec: 256.36
//
Query:       MMETSP1174-20130828|15665_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   17.7   5.3     0.0011   16.8   3.7    1.4  1  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   3.7   2.7e-07    0.0011      40     152 ..       5     110 ..       1     112 [. 0.73

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.7e-07
    TIGR03902  40 lllvllferrlrarrllllllllsllislglllllpeleaYvGLSGvlhGlfalgalrdirkkrksswllllgvlaklaleqltgasastaeligarvaveaHlaGalsGlll 152
                  ll++  +e+++  r l+ ++  +++++ ++ +++  ++ +  G SGv+ +l++l  l   r+++   +++++ v++++  e+   +s++++      + + aHl Ga +G+++
  MMETSP1174-20130828|15665_1   5 LLVGPPCEKEFGSRDLFKIMCYVAVSSAVAHMMFGAKFGWQLGASGVVFALILLNSLLSARSGTVP-LTFIITVMLWVGTET---RSLFFS---TDGISHIAHLSGAAVGTMA 110
                  55566678888889999999999999999***********************99999855444333.334455555555554...555422...23456679******99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 385.19
//
Query:       MMETSP1174-20130828|15668_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1174-20130828|15671_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.65
# Mc/sec: 402.06
//
Query:       MMETSP1174-20130828|15672_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|15674_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 378.94
//
Query:       MMETSP1174-20130828|15673_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.88
# Mc/sec: 562.45
//
Query:       MMETSP1174-20130828|15675_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 815.40
//
Query:       MMETSP1174-20130828|15683_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-51  170.7   0.0    9.9e-51  170.5   0.0    1.0  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
     0.0017   15.8   0.1     0.0078   13.6   0.1    1.8  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   4.8e-54   9.9e-51      98     306 ..       5     225 ..       1     226 [. 0.88

  Alignments for each domain:
  == domain 1    score: 170.5 bits;  conditional E-value: 4.8e-54
    TIGR01249  98 lvfGGsWGstlalayaqkhPekvtklvlrgifllrkkelewlyegglasalyPdewerfvdsipeaern.....eqlveayhkrlqsedeevklaaakaWadWestallrl..ekeevskaedaklslalarlenhyfvnkgflesenalldniskikniktvivqGrydlvcPlqsalalkkaf.P.....eaelkvvqdaGhsasdpnlvaalvvalekl 306
                   v+GGsWGstla++yaq +P ++  lvlrg+fl  ++e+++l+++g + a +P++we fv+ i ++  +      +l+ ay++rl s+d+ev  aaa+a++++e t   ++   ++  ++   + + + +a++e+hy++n+gf+    +lldn+++++ i+t+iv+Gr d vc    a++l ka  P     e++l++v++aGhs s+p++ +alv+a++++
  MMETSP1174-20130828|15683_1   5 VVLGGSWGSTLAVVYAQAYPAVIGSLVLRGVFLFTPTEINYLFQNGDSGAHHPEAWELFVAHIRDTSSEweterMNLLGAYYRRLCSNDNEVSSAAARAFVKYELTISKSFpdATKLNHTLATPTILVPFALFEAHYMLNNGFVR-RGQLLDNVDRMAGIPTTIVHGRCDFVCRPEAAWQLYKALdPtgtqaEISLHMVSGAGHSDSEPGIADALVKATDNF 225
                  479************************************************************98765544445789***************************9554444114455556677889999***************9.899**********************************974244433899***********************9986 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.8e-06    0.0078     100     128 ..       6      34 ..       2      46 .. 0.90
   2 ?   -0.1   0.0     0.056   1.2e+02     210     249 ..     145     181 ..      60     194 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.8e-06
    TIGR01250 100 llgqSwGglLaqeYalkyqqhlkgliiss 128
                  +lg SwG++La+ Ya  y+  + +l++ +
  MMETSP1174-20130828|15683_1   6 VLGGSWGSTLAVVYAQAYPAVIGSLVLRG 34 
                  79**********************99876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.056
    TIGR01250 210 neftitgklkdwditdklkeIkvPtLltvgefde.mtpeaa 249
                  n f+  g+l   d  d+++   +Pt ++ g+ d  + peaa
  MMETSP1174-20130828|15683_1 145 NGFVRRGQLL--DNVDRMAG--IPTTIVHGRCDFvCRPEAA 181
                  4555555553..45666665..5999999999852566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 775.44
//
Query:       MMETSP1174-20130828|15686_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1174-20130828|15691_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 838.77
//
Query:       MMETSP1174-20130828|15693_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|15697_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|15699_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   10.4   4.3       0.16    9.6   0.6    2.4  2  TIGR01451 B_ant_repeat: conserved repeat domain


Domain annotation for each model (and alignments):
>> TIGR01451  B_ant_repeat: conserved repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6     4e-05      0.16      16      41 ..      98     126 ..      89     128 .. 0.86
   2 ?    1.4   0.1     0.015        60      15      26 ..     173     184 ..     171     192 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4e-05
    TIGR01451  16 YtitvtNtGnvtat...nVvvtDiLPaGl 41 
                   t++vtN G ++ +   +V vtD+ P+ +
  MMETSP1174-20130828|15699_1  98 LTVNVTNVGSIDGNeivQVYVTDPTPSQV 126
                  7*********99987779******99976 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.015
    TIGR01451  15 tYtitvtNtGnv 26 
                  tYtitv  +++ 
  MMETSP1174-20130828|15699_1 173 TYTITVGSSSDQ 184
                  9****9655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 471.74
//
Query:       MMETSP1174-20130828|15701_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.55
# Mc/sec: 177.59
//
Query:       MMETSP1174-20130828|15702_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 243.14
//
Query:       MMETSP1174-20130828|15703_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.48
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|15705_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 216.66
//
Query:       MMETSP1174-20130828|15706_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1174-20130828|15707_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|15709_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   14.6   0.2     0.0089   14.2   0.1    1.2  1  TIGR03049 PS_I_psaK: photosystem I reaction center subunit PsaK
     0.0081   13.9   0.0      0.011   13.5   0.0    1.1  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03049  PS_I_psaK: photosystem I reaction center subunit PsaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.3e-06    0.0089      48      73 ..      56      81 ..      36      85 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.3e-06
    TIGR03049 48 ffkgfglpellattslGHilGvgvil 73
                   +  g++ ++a +slG +lG+g+il
  MMETSP1174-20130828|15709_1 56 ATSSEGHAVFMAEASLGVVLGMGIIL 81
                 556779******************97 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.1e-06     0.011      94     146 ..      31      84 ..      26      87 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.1e-06
    TIGR03927  94 ktkkqLFsseyeqtsssseste.eeetektssilllvliaglillliagiyfli 146
                  ++++ + sse  + +ss++st+ e+ t++ ++++ ++   + ++l+ ++i  ++
  MMETSP1174-20130828|15709_1  31 EQEDYMSSSEEHNMTSSESSTKhESATSSEGHAVFMAEASLGVVLGMGIILLAM 84 
                  678888999999999998888878888999999999889999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|15713_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|15715_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1174-20130828|15716_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 113.13
//
Query:       MMETSP1174-20130828|15714_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 566.78
//
Query:       MMETSP1174-20130828|15721_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 613.11
//
Query:       MMETSP1174-20130828|15720_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-07   27.8   1.2    3.4e-07   27.8   0.9    1.8  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    9.7e-06   22.0   3.4    9.7e-06   22.0   2.3    1.9  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0042   13.5   1.7     0.0059   13.0   1.1    1.2  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
  ------ inclusion threshold ------
      0.027    9.8   0.1      0.037    9.3   0.0    1.1  1  TIGR01580 narG: nitrate reductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.9   3.3e-10   3.4e-07      19      66 ..       2      49 ..       1      95 [. 0.76
   2 ?   -0.9   0.3      0.18   1.8e+02      56     104 ..     140     186 ..     122     206 .. 0.53

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 3.3e-10
    TIGR02349 19 kAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfg 66
                 kA+r ++kk+HPD+n+g+++a  +f +in+A++ L+   k+  + +  
  MMETSP1174-20130828|15720_1  2 KAFRLVSKKHHPDKNRGDPNATRRFEKINKANQRLETFLKKGYFAEED 49
                 9********************************999888876665533 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.18
    TIGR02349  56 eekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggg 104
                  ee+r++ D+ + ++ ++ +++++a  +  ++s++   ++  +e+f++++
  MMETSP1174-20130828|15720_1 140 EEQRKEQDEAAAEQRKQREAEQEA--ARPDSSTVPYNERSVKELFHEAR 186
                  344444455444444443332221..22222345556666666666544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.3   9.5e-09   9.7e-06      21      60 ..       2      42 ..       1      68 [. 0.88
   2 ?   -1.4   0.4      0.12   1.2e+02     347     487 ..     144     159 ..     112     212 .. 0.53

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.5e-09
    TIGR03835 21 kafrkLakkyhPDrnka.adaakifaeineandvLsnPkkr 60
                 kafr ++kk+hPD+n+  ++a + f  in an+ L    k+
  MMETSP1174-20130828|15720_1  2 KAFRLVSKKHHPDKNRGdPNATRRFEKINKANQRLETFLKK 42
                 9**************988**************998766665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.12
    TIGR03835 347 kevdqiqeelkktkeieveelptkkadlveievddleelkfelveknqekePekavenaatdyqldeatesnidwykqedpkdledlvqdqatleiteedqiseekveeetsvestavedqvveaikeeeelleqkkaaef 487
                  ke+d                                                                                                                             e ++eq+k  e 
  MMETSP1174-20130828|15720_1 144 KEQD-----------------------------------------------------------------------------------------------------------------------------EAAAEQRKQREA 159
                  1111.............................................................................................................................112222222222 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.1   5.7e-06    0.0059     302     375 ..     134     209 ..     106     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.7e-06
    TIGR03143 302 teleryvkelkeklGieeayeeeeakekeeksee.ektpvavakksellddslkqqlvavlerlekk.vtlvlfld 375
                  + +e+y +++ke+   + +  ++ + e+e+++ +  + p + +  +el++++ ++ql++v  r +++ v+l+   d
  MMETSP1174-20130828|15720_1 134 AAAEQYEEQRKEQDEAAAEQRKQREAEQEAARPDsSTVPYNERSVKELFHEARRRQLNVVGVREKNElVDLLEKDD 209
                  5689999999999886666666655566655555055566888899************998887776245554444 PP

>> TIGR01580  narG: nitrate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   3.6e-05     0.037     652     702 ..      92     142 ..      88     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 3.6e-05
    TIGR01580 652 lgwlpsapqlntnpldiakeaekagmepkdyvvkslkegslrfaieqpdne 702
                  +g +p +p +++ p ++   a ++gm+p+d+++   +e + + a+eq +++
  MMETSP1174-20130828|15720_1  92 MGGMPGMPGMGNIPPEVFMAAMNSGMNPQDFMAAYAQEMQRKAAAEQYEEQ 142
                  899********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       343  (0.0836177); expected 82.0 (0.02)
Passed bias filter:                      204  (0.0497318); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 715.67
//
Query:       MMETSP1174-20130828|15723_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|15729_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1174-20130828|15733_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|15734_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.89
# Mc/sec: 413.76
//
Query:       MMETSP1174-20130828|15741_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 257.21
//
Query:       MMETSP1174-20130828|15740_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-09   34.3   0.0    4.4e-09   34.0   0.0    1.1  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
    3.8e-06   24.8   0.0    5.4e-06   24.3   0.0    1.4  1  TIGR00586 mutt: mutator mutT protein
    1.3e-05   22.7   0.0    2.3e-05   21.8   0.0    1.3  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   3.2e-12   4.4e-09      24     140 ..      53     176 ..      33     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 3.2e-12
    TIGR00052  24 kkrlfkdeestkkkreilkrgdaaavllydkkkdsvvlvkQfRiaayarreefksdqll........elvaglvekaeslEdvarrEaiEEaGyqvknlkkilslysspGgvselihlfvaEvdk 140
                  +  +++de+  ++ +++  r    a  +     d vv++  +R a   + e+   +q          el aglv+ +es+E+ a+rE  EE+Gy    +   + + +spG + e  +l v +v+ 
  MMETSP1174-20130828|15740_1  53 QTITYRDEKGRQRLWDVCTRTTRDAS-ASKSGVDAVVILALLRSASREQVETLIIQQYRppvgcitvELPAGLVDPGESPEQAALRELKEETGYVGDVVSCSGAVCMSPGITDESVKLVVIDVNL 176
                  44455666666677888887765553.44667799**********9999999666665599999999***************************7677777799*************99988864 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.9e-09   5.4e-06      33      65 ..     117     149 ..      97     205 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.9e-09
    TIGR00586  33 klefPGGkieaGetpeqavvrelqeevgitaqh 65 
                   +e P G +++Ge peqa  rel+ee g +  +
  MMETSP1174-20130828|15740_1 117 TVELPAGLVDPGESPEQAALRELKEETGYVGDV 149
                  579***********************9987665 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.7e-08   2.3e-05      47      74 ..     118     145 ..     115     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.7e-08
    TIGR02705  47 lefPGGkveegetskeaaiRevleetGa 74 
                  +e P G v+ ge++++aa Re++eetG 
  MMETSP1174-20130828|15740_1 118 VELPAGLVDPGESPEQAALRELKEETGY 145
                  79************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 812.24
//
Query:       MMETSP1174-20130828|15738_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.4    2.0  19.5        8.1    1.7  13.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  13.5     0.002       8.1     704     869 ..     382     549 ..     268     565 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.002
    TIGR00927 704 ltqtkkeeskdeeepak.l..pevtvtpapapedkgdqeedpgsqgdva.eaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevk.GeeeeeeveaeeeteaeG..dedegeieaeeeGeekededegeieak..eeve 869
                  l+++   e   e+epa+ l  p  t++ a a ++kgd  +d + q  ++ +++a g  ++ ++ ++  a +++  +sg+      es ++a   +  e  ae  ++ e e+ i+   ++ +  ++++ee e+++++ ++   +   ge+e+ e+G++ked   + +++   e+ +
  MMETSP1174-20130828|15738_1 382 LPPS--IEEATENEPAEeLptPPRTLSEAIAENTKGDAADDRSMQFISKpKPRAPGRVKHSDSVTA-RAGAPQ-PQSGSSGGGVPESSGNATILKFVESMAE-AEKLEIEAAIDCAGSDLDdSDDDDEESEDGGDGSDKNddTSGAGEVESRENGDTKEDG--NAAQGAaeEAED 549
                  3332..333445555542511557888999999999999998888654314444454444444333.333333.3333333322233333333333333333.2223344444444444320233444445444443333003445677777777777776..334432102211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.74
# Mc/sec: 1041.64
//
Query:       MMETSP1174-20130828|15745_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|15748_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48    8.2   4.3       0.57    8.0   2.9    1.3  1  TIGR03979 His_Ser_Rich: His-Xaa-Ser repeat protein HxsA


Domain annotation for each model (and alignments):
>> TIGR03979  His_Ser_Rich: His-Xaa-Ser repeat protein HxsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.9   0.00014      0.57      59     104 ..      30      73 ..       9      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00014
    TIGR03979  59 SHsSHrSHsSHrshySgsGGgyvvrskdtstysapvpsksyspssg 104
                  S   H  H+S +   S+   g + +  + st s pv ++  sp++ 
  MMETSP1174-20130828|15748_1  30 SKPLHATHGSEA--VSSVAAGTSNPCCPDSTLSVPVHTQPTSPQTM 73 
                  444577777776..677777788888888*******9999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|15749_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.6   0.1      0.012   13.4   0.1    1.2  1  TIGR01565 homeo_ZF_HD: homeobox domain, ZF-HD class


Domain annotation for each model (and alignments):
>> TIGR01565  homeo_ZF_HD: homeobox domain, ZF-HD class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     3e-06     0.012      13      46 ..       5      39 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3e-06
    TIGR01565 13 kekmrdyAeklgWklk.kkreeevreFCeeigveR 46
                  ekm +yA k+   ++ +kr  e ++ C+  g++ 
  MMETSP1174-20130828|15749_1  5 NEKMAEYASKIATAMQcGKRGMEPKRVCRHAGINE 39
                 79*************846778999******99974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|15750_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   13.2   0.3     0.0099   13.1   0.2    1.0  1  TIGR00816 tdt: C4-dicarboxylate transporter/malic acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00816  tdt: C4-dicarboxylate transporter/malic acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   2.4e-06    0.0099       6      66 ..       2      62 ..       1      66 [. 0.94

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-06
    TIGR00816  6 Faivlgtgglalaslslsellpilkviskvlvilaillfvlflsvwllrlikypeevkael 66
                 F++++gt  l+  +  ls +   + +i+  l+i++ +l+ ++++  +  +  yp+ ++  l
  MMETSP1174-20130828|15750_1  2 FSVPVGTFPLGAGMEALSAYNVKMSTITYPLTIIKAMLWGVMIVNVVGGIYAYPRIIRKAL 62
                 89999*************************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 251.10
//
Query:       MMETSP1174-20130828|15744_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-103  330.5   8.7    1.8e-07   28.8   0.0   16.3 16  TIGR00756 PPR: pentatricopeptide repeat domain
    6.5e-08   29.1   5.1      0.012   11.6   0.0    3.7  4  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
       0.03   11.0   0.8        3.6    4.2   0.0    4.3  6  TIGR00262 trpA: tryptophan synthase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-09     3e-06       1      35 []      91     125 ..      91     125 .. 0.97
   2 !   27.9   0.1   2.4e-10   3.3e-07       2      34 ..     127     159 ..     126     160 .. 0.95
   3 !   18.7   0.0   2.1e-07   0.00028       3      35 .]     163     195 ..     161     195 .. 0.86
   4 !   13.0   0.0   1.4e-05     0.019       2      34 ..     197     229 ..     196     230 .. 0.97
   5 !    5.5   0.0    0.0032       4.4       2      35 .]     232     265 ..     231     265 .. 0.91
   6 !   24.0   0.0   4.5e-09   6.1e-06       2      35 .]     267     300 ..     266     300 .. 0.96
   7 !   26.4   0.0   7.7e-10     1e-06       1      27 [.     301     328 ..     301     336 .. 0.87
   8 !   28.8   0.0   1.3e-10   1.8e-07       1      35 []     337     371 ..     337     371 .. 0.96
   9 !   28.5   0.0   1.6e-10   2.2e-07       1      35 []     372     406 ..     372     406 .. 0.96
  10 !   25.4   0.0   1.5e-09   2.1e-06       1      35 []     407     441 ..     407     441 .. 0.97
  11 !   19.8   0.0   9.7e-08   0.00013       2      35 .]     443     476 ..     442     476 .. 0.93
  12 !   19.3   0.0   1.3e-07   0.00018       2      34 ..     478     510 ..     477     511 .. 0.91
  13 !   18.7   0.0     2e-07   0.00028       2      35 .]     513     546 ..     512     546 .. 0.95
  14 !   16.1   0.0   1.5e-06     0.002       5      35 .]     551     581 ..     547     581 .. 0.87
  15 !    7.7   0.0   0.00065      0.89       4      34 ..     585     615 ..     582     616 .. 0.87
  16 !   11.4   0.0   4.3e-05     0.058       7      29 ..     623     645 ..     623     647 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.2e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++y+++is +++a+r+ + ++++ +M ++g+ Pd+
  MMETSP1174-20130828|15744_1  91 FSYTAMISVCGRAKRWQDSIKFLIRMDANGFPPDT 125
                  59*******************************96 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 2.4e-10
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  +yn+ +s++ k+g++eeAl+lf+ M+ rgi+ +
  MMETSP1174-20130828|15744_1 127 VYNAAMSACRKSGKWEEALQLFKFMEVRGIERN 159
                  8*****************************987 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.1e-07
    TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPda 35 
                  + tli + +k+g++  +l+l+deM+ +g+vPd+
  MMETSP1174-20130828|15744_1 163 FKTLILAGGKRGKWQTMLDLLDEMCQNGLVPDV 195
                  5566666689*********************96 PP

  == domain 4    score: 13.0 bits;  conditional E-value: 1.4e-05
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  t+n+++s++ k+g+  +  +l+  M + g+ Pd
  MMETSP1174-20130828|15744_1 197 TFNAVMSSCEKNGQGAKTSKLLATMFSLGVTPD 229
                  9*******************************9 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.0032
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++ + is++ +  ++eeA++++  M+ +g  Pd+
  MMETSP1174-20130828|15744_1 232 SFRIAISSCKQTINWEEAVDFLWMMRLSGSDPDV 265
                  677889***********************99995 PP

  == domain 6    score: 24.0 bits;  conditional E-value: 4.5e-09
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                  +y+t i  ++++g++ + lel+deM+++g+ P++
  MMETSP1174-20130828|15744_1 267 CYSTAIITCGNNGQWMKTLELLDEMRDNGVNPNV 300
                  7*******************************96 PP

  == domain 7    score: 26.4 bits;  conditional E-value: 7.7e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeM.k 27 
                  v++n+ is+++kag++e+A+e+++ M  
  MMETSP1174-20130828|15744_1 301 VSFNAAISACGKAGQWEKAIEVLQMMqY 328
                  79************************55 PP

  == domain 8    score: 28.8 bits;  conditional E-value: 1.3e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++++ is++ kag++  Al+l+deM+++g++P++
  MMETSP1174-20130828|15744_1 337 ISFSAAISACEKAGQWQTALQLLDEMRDNGVKPNV 371
                  58999****************************96 PP

  == domain 9    score: 28.5 bits;  conditional E-value: 1.6e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v++++ is+++k +++ e+++l++eM+ +g++P++
  MMETSP1174-20130828|15744_1 372 VSFSAAISACAKGKQWQEVMQLLEEMRQSGVEPNV 406
                  6899*****************************96 PP

  == domain 10    score: 25.4 bits;  conditional E-value: 1.5e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v+y++ +s++ k+g++   l+lfdeM+++ i+P++
  MMETSP1174-20130828|15744_1 407 VSYSAAMSAFEKSGQWQRSLYLFDEMRSSSIKPNI 441
                  79*******************************95 PP

  == domain 11    score: 19.8 bits;  conditional E-value: 9.7e-08
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++ + is++ k  ++e+Al+l+deM+ +g+ Pd+
  MMETSP1174-20130828|15744_1 443 SFGAAISACEKGLQWEKALQLLDEMRLCGVQPDV 476
                  788899**************************96 PP

  == domain 12    score: 19.3 bits;  conditional E-value: 1.3e-07
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  + n+ ++ ++k+g++e  l lfd M+ rg+  d
  MMETSP1174-20130828|15744_1 478 SLNACMRTCVKSGQWEASLLLFDGMQQRGVIHD 510
                  579**************************9755 PP

  == domain 13    score: 18.7 bits;  conditional E-value: 2e-07
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++++ i ++ + g++e  lel +eM++r ++Pd+
  MMETSP1174-20130828|15744_1 513 SFSAAIQACERGGQWELLLELVEEMRRRRMEPDS 546
                  89999***************************95 PP

  == domain 14    score: 16.1 bits;  conditional E-value: 1.5e-06
    TIGR00756   5 tlisglckagrveeAlelfdeMkergivPda 35 
                  + i+++ ++ + e+Al+l++eM++rg  P++
  MMETSP1174-20130828|15744_1 551 SAIRAYDRSEQSEKALQLLEEMRKRGSAPNT 581
                  668888899999*****************95 PP

  == domain 15    score: 7.7 bits;  conditional E-value: 0.00065
    TIGR00756   4 ntlisglckagrveeAlelfdeMkergivPd 34 
                  ++ ++++ k gr+e  l+l+d+++ rg++Pd
  MMETSP1174-20130828|15744_1 585 TAAVRACDKMGRWEQSLQLLDQIRYRGMKPD 615
                  666777779*********************9 PP

  == domain 16    score: 11.4 bits;  conditional E-value: 4.3e-05
    TIGR00756   7 isglckagrveeAlelfdeMker 29 
                  is++ k g++++A+el +eM   
  MMETSP1174-20130828|15744_1 623 ISACIKGGQWKKAFELQHEMTQY 645
                  89******************765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   8.8e-06     0.012      36     113 ..      73     152 ..      51     187 .. 0.84
   2 !    5.9   0.0   0.00047      0.65      25     110 ..     271     360 ..     265     371 .. 0.77
   3 !    7.2   0.1    0.0002      0.27      31     146 ..     348     467 ..     346     481 .. 0.80
   4 !    8.6   0.2   7.3e-05       0.1      90     177 ..     515     604 ..     509     646 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.8e-06
    TIGR03939  36 aealslLqklyrktkldkkvldDllavlsWagedkevidvyeryslvglpa..relealAkAaRnekqwdkAlelyrkll 113
                  + a  ++ +l +++  d+  ++  + v ++a + ++ i+   r++ +g+p   r+++a+ +A+R++++w++Al+l++ + 
  MMETSP1174-20130828|15744_1  73 QGASAYFYDLEQQGLVDSFSYTAMISVCGRAKRWQDSIKFLIRMDANGFPPdtRVYNAAMSACRKSGKWEEALQLFKFME 152
                  556667778888888888888999*************************97336799999***************99765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00047
    TIGR03939  25 qliiqARaGdlaealslLqklyrktkldkkvl..dDllavlsWagedkevidvyery.slvglpar..elealAkAaRnekqwdkAlelyr 110
                  ++i  + +G+  + l+lL+++ +++  +++v+  +  +   + ag+ +++i+v + +   +++  +  +  a+++A+ +++qw++Al+l  
  MMETSP1174-20130828|15744_1 271 AIITCGNNGQWMKTLELLDEMRDNGV-NPNVVsfNAAISACGKAGQWEKAIEVLQMMqYEKDVTRDviSFSAAISACEKAGQWQTALQLLD 360
                  56677889999999999998888888.99998334566667899**999999999884444555551245789999**********99865 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0002
    TIGR03939  31 RaGdlaealslLqklyrktkldkkvldDllavlsWa..gedkevidvyeryslvglparele..alAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladag.kdeeAlkalkel 146
                  +aG+ + al+lL+++ +++  +++v++   a+ + a   + +ev+++ e+++ +g+  +++   a+ +A+ +++qw+ +l l+ ++ + + k + +  G a ++ ++g + e+Al+ l+e+
  MMETSP1174-20130828|15744_1 348 KAGQWQTALQLLDEMRDNGV-KPNVVSFSAAISACAkgKQWQEVMQLLEEMRQSGVEPNVVSysAAMSAFEKSGQWQRSLYLFDEMRSSSIKPNIISFGAAISACEKGlQWEKALQLLDEM 467
                  79***********8888888.999998877776655216789*********8888877765511566899*************99998887777777888888888874557788877776 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 7.3e-05
    TIGR03939  90 ealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladag.kdeeAlkalkelkerfp.sdaerlealaYvlraaedsldalaai 177
                   a+++A+ + +qw+  lel++++ +r  + +++ l+ a  + d + ++e+Al+ l+e+++r + ++   l+a  ++ ++ +++ ++l+ +
  MMETSP1174-20130828|15744_1 515 SAAIQACERGGQWELLLELVEEMRRRRMEPDSMSLSSAIRAYDRSeQSEKALQLLEEMRKRGSaPNTVSLTAAVRACDKMGRWEQSLQLL 604
                  68899999999************9999999999999999999975267889999999998887223333444445555555555554444 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.76     1e+03      59     103 ..     129     171 ..     126     186 .. 0.78
   2 ?    0.9   0.0     0.027        37      60      84 ..     376     400 ..     325     408 .. 0.76
   3 ?    0.7   0.0     0.031        43      60      87 ..     376     403 ..     371     419 .. 0.82
   4 ?   -1.6   0.0      0.16   2.2e+02      60      82 ..     446     468 ..     440     477 .. 0.86
   5 ?    4.2   0.0    0.0026       3.6      60      89 ..     551     579 ..     545     588 .. 0.84
   6 ?   -2.0   0.0       0.2   2.8e+02      59      83 ..     585     609 ..     580     613 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.76
    TIGR00262  59 aaelRAlkagvkvekalellkkvrekasniPivlltyynlifkkg 103
                  +a++ A +++ k e+al+l k ++ +   i   +lt+  li++ g
  MMETSP1174-20130828|15744_1 129 NAAMSACRKSGKWEEALQLFKFMEVR--GIERNMLTFKTLILAGG 171
                  67788888999999999999988776..56667777777777665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.027
    TIGR00262  60 aelRAlkagvkvekalellkkvrek 84 
                  a+  A ++g + +++++ll+++r++
  MMETSP1174-20130828|15744_1 376 AAISACAKGKQWQEVMQLLEEMRQS 400
                  5566777777777777888777776 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.031
    TIGR00262  60 aelRAlkagvkvekalellkkvrekasn 87 
                  a+  A ++g + +++++ll+++r++ ++
  MMETSP1174-20130828|15744_1 376 AAISACAKGKQWQEVMQLLEEMRQSGVE 403
                  677899999**************98654 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.16
    TIGR00262  60 aelRAlkagvkvekalellkkvr 82 
                  a+  A ++g++ ekal+ll+++r
  MMETSP1174-20130828|15744_1 446 AAISACEKGLQWEKALQLLDEMR 468
                  6677999*************998 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.0026
    TIGR00262  60 aelRAlkagvkvekalellkkvrekasniP 89 
                  ++ RA +++ ++ekal+ll+++r++  ++P
  MMETSP1174-20130828|15744_1 551 SAIRAYDRSEQSEKALQLLEEMRKRG-SAP 579
                  689********************984.444 PP

  == domain 6    score: -2.0 bits;  conditional E-value: 0.2
    TIGR00262  59 aaelRAlkagvkvekalellkkvre 83 
                  +a++RA ++  + e++l+ll+++r 
  MMETSP1174-20130828|15744_1 585 TAAVRACDKMGRWEQSLQLLDQIRY 609
                  5899*****99**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1710.58
//
Query:       MMETSP1174-20130828|15753_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1120.02
//
Query:       MMETSP1174-20130828|15755_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 233.52
//
Query:       MMETSP1174-20130828|15756_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|15758_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|15757_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 826.00
//
Query:       MMETSP1174-20130828|15760_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   13.1   0.0     0.0072   12.7   0.0    1.1  1  TIGR01530 nadN: NAD nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01530  nadN: NAD nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.8e-06    0.0072     396     445 ..      87     134 ..      71     138 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-06
    TIGR01530 396 dlviqnaggvradilpgevtyndaytllpfsntlvlvdvegaelkqvled 445
                   + ++  g  r d+  g+ t nd  tl pf++ +  v    +   qvl+d
  MMETSP1174-20130828|15760_1  87 KILVESVGSLRYDVYEGNFTKNDVATLSPFADIFWRVA--ASVSGQVLQD 134
                  5678899************************9886543..3334455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|15763_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|15765_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 523.56
//
Query:       MMETSP1174-20130828|15766_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 364.29
//
Query:       MMETSP1174-20130828|15770_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|15767_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.9   0.0      0.028   12.2   0.0    1.3  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-06     0.028      56     119 ..     127     191 ..     112     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.9e-06
    TIGR00568  56 geqYdytsk..eyetdkksPdfPkdlgdlvekrvaealgfedfkaeaalvnlYapgatlslHiDrs 119
                  g+++dy++k   + +d  +P +P +l  lv  r+ +       +++   vn Y pg  +++H+D  
  MMETSP1174-20130828|15767_1 127 GYRFDYNTKgiAFADDVDTPPIPTELSPLVS-RIEDLGLNGGERPNQLTVNEYLPGRGIAAHVDTH 191
                  455566665226899**************95.776666666789********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1323.66
//
Query:       MMETSP1174-20130828|15771_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|15768_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.62
# Mc/sec: 1028.24
//
Query:       MMETSP1174-20130828|15772_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|15776_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|15779_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|15778_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   11.3   1.2        0.4    8.6   0.2    2.3  2  TIGR02574 stabl_TIGR02574: putative addiction module component, TIGR02574 family


Domain annotation for each model (and alignments):
>> TIGR02574  stabl_TIGR02574: putative addiction module component, TIGR02574 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   9.7e-05       0.4      36      64 ..     261     290 ..     259     291 .. 0.91
   2 ?    3.0   0.1    0.0055        23      38      64 ..     284     311 ..     284     312 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 9.7e-05
    TIGR02574  36 aELerRladykadpska.ipwEevkarirk 64 
                  +ELerR+++++ d   a   w+ + ar+r+
  MMETSP1174-20130828|15778_1 261 DELERRIKALQIDEEGApANWDSLNARLRS 290
                  7**********999888799********97 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0055
    TIGR02574  38 LerRladyk..adpskaipwEevkarirk 64 
                  L +Rl ++k  +d+ k+ +++e+++r+ k
  MMETSP1174-20130828|15778_1 284 LNARLRSLKgdDDR-KPASMDELRERLSK 311
                  56777777631444.556********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 887.69
//
Query:       MMETSP1174-20130828|15781_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    6.4  13.8        2.3    6.5   2.8    2.4  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.8   0.00056       2.3      19      37 ..       2      24 ..       1      38 [. 0.54
   2 ?    5.2   1.5    0.0014       5.8      17      36 ..      51      70 ..      49      85 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00056
    TIGR02811 19 avgaaagavaaatgrva....sa 37
                 av+aaa+a+a+++++v      a
  MMETSP1174-20130828|15781_1  2 AVAAAAAAAAGTSPTVEnvvmPA 24
                 67777777777777765443322 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0014
    TIGR02811 17 glavgaaagavaaatgrvas 36
                 ++a +aaa+++aa+ g    
  MMETSP1174-20130828|15781_1 51 AVASAAAAAGAAAGEGGSQR 70
                 45666666666766665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 642.35
//
Query:       MMETSP1174-20130828|15777_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|15782_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.60
# Mc/sec: 565.35
//
Query:       MMETSP1174-20130828|15785_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1174-20130828|15786_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 940.95
//
Query:       MMETSP1174-20130828|15787_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   31.4   1.2      4e-05   20.7   0.1    2.0  2  TIGR00899 2A0120: sugar efflux transporter
    0.00082   16.0   3.6    0.00097   15.8   2.5    1.1  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
     0.0048   13.7   0.7     0.0062   13.3   0.5    1.2  1  TIGR00882 2A0105: oligosaccharide:H+ symporter
  ------ inclusion threshold ------
      0.016   13.2   5.0      0.025   12.6   3.4    1.4  1  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   3.9e-08     4e-05     222     298 ..      10      88 ..       3     110 .. 0.83
   2 !   10.0   0.1     7e-05     0.072     134     204 ..     124     192 ..     102     198 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.9e-08
    TIGR00899 222 mplflineLglteklaGlllgtaaGleiPvmllagylvkRlGkrlllllavvagvlfyaglllanslv..vllalqlln 298
                  ++lf+   L+++ +l G+++++++  +iPv   ag l++ +G+   ll+a v    +  g++l ++ +   +l l++l+
  MMETSP1174-20130828|15787_1  10 LFLFVLGPLEGSSTLCGFIILVSSLCNIPVFHHAGTLLRYFGHNGCLLIAQVCYFTRVFGYTLLTPATknCILFLEVLH 88 
                  699**************************************************99999999888765311566666665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 7e-05
    TIGR00899 134 isLawvigpplafaLalgfafavmflaaavalvvaavlvtllLPsvakeapkaltalevrgllakrdvrlL 204
                   s +  ig +l ++L ++++   m+ a a a++  +vl +l    + +    ++t++ + +++++ d+ + 
  MMETSP1174-20130828|15787_1 124 YSAGPGIGALLGGWLWDQYSPRFMYRAYACAVMALSVLRAL--RMMSRRLSCVKTRVRSAPNQHTEDTIMH 192
                  45566799*********************998877776555..7888999999999999999999998775 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.5   9.4e-07   0.00097      57     160 ..      43     149 ..      13     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.4e-07
    TIGR00711  57 tgwlakrlgerklflvsvlaFtlssl.lcgvannl.elliifRviQgfggglliplseslllseyppekrglalalvgla.vlvaPvlGPiLgGwiieayeWrwiFl 160
                  +g l + +g+  + l++ +++ +  +    +++   + +++  v+  f  + l + s    ++ +pp   +l   lv++   + +P +G  LgGw+ ++y+ r+++ 
  MMETSP1174-20130828|15787_1  43 AGTLLRYFGHNGCLLIAQVCYFTRVFgYTLLTPATkNCILFLEVLHDFTFATLWVASVDFAANTAPPGWSSLLQSLVSVIyYSAGPGIGALLGGWLWDQYSPRFMYR 149
                  66788899999999999998766554233345554145666799******************************99997615778********************84 PP

>> TIGR00882  2A0105: oligosaccharide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.5     6e-06    0.0062     254     388 ..      23     159 ..      10     168 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6e-06
    TIGR00882 254 rvfGyvttagellnalimfiapliinriGaknalliagvimavrilgssfattale..vvilkllhalevplllvgvfkyitsafdkrlsatiyligfqlakqlaivllsalaGklydriGfqeaylvlglivlslt 388
                   + G++  +  l+n  +   a  ++   G   +llia v   +r+ g ++ t a++  +  l +lh +    l v+   + + +     s+ +  +   +  + +  + + l G l+d+   + +y + ++ v++l 
  MMETSP1174-20130828|15787_1  23 TLCGFIILVSSLCNIPVFHHAGTLLRYFGHNGCLLIAQVCYFTRVFGYTLLTPATKncILFLEVLHDFTFATLWVASVDFAANTAPPGWSSLLQSLVSVIYYSAGPGIGALLGGWLWDQYSPRFMYRAYACAVMALS 159
                  5789*********************************************99977652277789*******9999999988887776666666655555555555555555566666666666666655555555555 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.4   2.4e-05     0.025      44     134 ..      71     162 ..      24     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-05
    TIGR00880  44 lfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsag.ialgpilGpllGavlaqalgwralflilallallafill 134
                   + +  +   ++++ +l+ f+ a+ +va    +a  ++++  s   +l+s++  ++gp +G+llG++l + ++ r+++ + a+ +++ ++l 
  MMETSP1174-20130828|15787_1  71 TLLTPATKNCILFLEVLHDFTFATLWVASVDFAANTAPPGWSSLLQSLVSVIyYSAGPGIGALLGGWLWDQYSPRFMYRAYACAVMALSVLR 162
                  3444566667888999************************9999999998762689*************88888899988888777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 642.35
//
Query:       MMETSP1174-20130828|15789_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.48
# Mc/sec: 173.24
//
Query:       MMETSP1174-20130828|15790_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.56
# Mc/sec: 1164.75
//
Query:       MMETSP1174-20130828|15796_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 641.09
//
Query:       MMETSP1174-20130828|15795_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|15801_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 309.13
//
Query:       MMETSP1174-20130828|15803_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-09   33.0   0.2    3.6e-09   32.7   0.2    1.0  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
  ------ inclusion threshold ------
      0.014   12.6   0.1      0.017   12.4   0.1    1.1  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   1.7e-12   3.6e-09       5      41 ..      45      81 .]      41      81 .] 0.97

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.7e-12
    TIGR01408  5 alysrqlyvlGdeamkklaksnvlisGmkGlGveiak 41
                 +lysrq + +G e+m kl+  +vl++G++GlG+eiak
  MMETSP1174-20130828|15803_1 45 DLYSRQIATYGLETMGKLVTMRVLVVGVRGLGIEIAK 81
                 8***********************************8 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.1e-06     0.017       2      37 ..      47      80 ..      46      81 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.1e-06
    TIGR02356  2 yarqlllkeigeegqqklleskvliiGaGgLgsava 37
                 y+rq+  + +g e   kl   +vl++G+ gLg ++a
  MMETSP1174-20130828|15803_1 47 YSRQI--ATYGLETMGKLVTMRVLVVGVRGLGIEIA 80
                 66665..689999*******************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|15805_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 785.94
//
Query:       MMETSP1174-20130828|15809_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 435.21
//
Query:       MMETSP1174-20130828|15816_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.2   0.8      0.039   10.8   0.1    2.0  2  TIGR00435 cysS: cysteine--tRNA ligase
  ------ inclusion threshold ------
      0.039   12.0   0.0        3.6    5.8   0.0    2.5  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   1.9e-05     0.039     418     459 ..       9      50 ..       4      56 .. 0.85
   2 !    7.2   0.0   0.00024      0.49     419     459 ..      75     115 ..      66     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
    TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                  ++ +e+l++ r  a+++k+++kaD+i ++l ++  v++D ++
  MMETSP1174-20130828|15816_1   9 VAAVEALLKARGLAKQAKDYEKADDILETLRSEYSVVTDDKQ 50 
                  57899*************************988766666644 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00024
    TIGR00435 419 geledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                  +++ dl+++r+e +   e+++aD++  +l+++givL+ t++
  MMETSP1174-20130828|15816_1  75 KQVGDLLAKRTEHQDLDEYEEADALHAQLTERGIVLDXTHQ 115
                  678899999***************************98876 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0093        19      12      28 ..      24      40 ..      23      47 .. 0.84
   2 ?    5.8   0.0    0.0017       3.6      15      34 ..      92     111 ..      89     112 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0093
    TIGR00756 12 kagrveeAlelfdeMke 28
                 +a+++e+A ++++ +++
  MMETSP1174-20130828|15816_1 24 QAKDYEKADDILETLRS 40
                 589********998766 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0017
    TIGR00756  15 rveeAlelfdeMkergivPd 34 
                  ++eeA  l  ++ ergiv d
  MMETSP1174-20130828|15816_1  92 EYEEADALHAQLTERGIVLD 111
                  79****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 607.95
//
Query:       MMETSP1174-20130828|15813_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 992.79
//
Query:       MMETSP1174-20130828|15822_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   21.0   0.0    1.4e-05   21.0   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.4e-09   1.4e-05     147     183 ..       9      45 ..       2      50 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.4e-09
    TIGR03903 147 tevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCL 183
                  +  +G+P Y +Pe  R+ep   ksD+++ G+++ e L
  MMETSP1174-20130828|15822_1   9 ETQIGTPYYLSPEMYRDEPYGKKSDVWSLGIMLYEIL 45 
                  4569****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.60
# Mc/sec: 116.59
//
Query:       MMETSP1174-20130828|15823_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 427.23
//
Query:       MMETSP1174-20130828|15825_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1174-20130828|15828_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|15830_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.64
# Mc/sec: 175.30
//
Query:       MMETSP1174-20130828|15831_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.56
# Mc/sec: 702.37
//
Query:       MMETSP1174-20130828|15833_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-06   25.7   2.3      2e-06   25.2   1.6    1.1  1  TIGR00900 2A0121: H+ Antiporter protein


Domain annotation for each model (and alignments):
>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   1.6   4.8e-10     2e-06     123     313 ..       3     209 ..       1     216 [. 0.73

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.8e-10
    TIGR00900 123 eeltranslsqlvrslieivgPg...iggllvatlgikaailvdavgflisallivsvripkkaaseeeelse.............avlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskvlrrssvevgvvlaafglGa..llGalllg....llgkylkraalitiavlviglailvlgllnpn..lllllvlaaaiGvv 313
                  ++l+ a+++ +++ ++++ +g +   +g +   + ++ +     +  f++    ++sv +   +as e+ l+              a+    + G + ++  ++L+ l  l+  + ++++ +   l+  ++++ +  +++++ + +aa   G+  +l  ll +    +l++ ++r++++t+a +++ l  ++lg+l+ +   + +lvlaaa +v 
  MMETSP1174-20130828|15833_1   3 DQLALAIGVTEMAHNIANYIGKVsinVGLAFGDWEMTLW-----FGVFICVFSCVISVAYFFLEASVETDLKShltdltstvegnnASQPSCVSGCRDLFGARRLSGLFWLFCFLHFLVSNVE-HLFDAISTD-FIYEKWDMQWKEAAWLSGLnyALPILLSPvigyMLDRSKSRMLIATMACITMMLGHFILGFLY-WdpAVGMLVLAAAESVL 209
                  789999999999999998554430003333333333333.....3334444444444444444443333333334445558888888888999******************************.*********.**************9888622223333336667******************************.55699999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.65
# Mc/sec: 442.67
//
Query:       MMETSP1174-20130828|15832_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1174-20130828|15837_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|15838_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 135.87
//
Query:       MMETSP1174-20130828|15839_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 536.47
//
Query:       MMETSP1174-20130828|15842_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|15835_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.48
# Mc/sec: 1682.86
//
Query:       MMETSP1174-20130828|15840_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 742.44
//
Query:       MMETSP1174-20130828|15844_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|15846_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.42
# Mc/sec: 216.84
//
Query:       MMETSP1174-20130828|15847_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1174-20130828|15850_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 270.58
//
Query:       MMETSP1174-20130828|15851_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-31  105.6   0.1    6.1e-31  105.4   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.4e-19   66.3   0.0    6.2e-19   66.1   0.0    1.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    8.2e-16   56.0   0.0    9.4e-16   55.8   0.0    1.0  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.5e-14   51.4   0.0    2.9e-14   51.2   0.0    1.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.4e-14   50.1   0.0    4.6e-14   50.1   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.7e-14   50.0   0.0    6.5e-14   49.8   0.0    1.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      3e-13   47.7   0.0    3.5e-13   47.5   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.4e-13   47.4   0.0    3.7e-13   47.2   0.0    1.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.1e-13   46.3   0.1      6e-13   46.1   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.7e-12   45.3   0.0    1.8e-12   45.2   0.0    1.0  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.8e-12   45.0   0.0    2.1e-12   44.7   0.0    1.1  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.3e-12   43.8   0.0    2.7e-12   43.6   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.8e-12   44.1   0.0    4.1e-12   44.0   0.0    1.0  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.3e-12   43.3   0.0    6.5e-12   43.0   0.0    1.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    9.1e-12   42.7   0.0    1.1e-11   42.4   0.0    1.0  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.2e-11   42.3   0.0    1.4e-11   42.1   0.0    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      2e-11   41.6   0.0    2.5e-11   41.3   0.0    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.6e-11   41.2   0.0      3e-11   41.0   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.8e-11   40.8   0.0    4.3e-11   40.6   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.5e-11   40.2   0.0      5e-11   40.1   0.0    1.0  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.5e-11   40.4   0.0    6.6e-11   40.2   0.0    1.0  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.9e-11   38.9   0.0    8.1e-11   38.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.1e-10   39.2   0.0    1.3e-10   39.0   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.3e-10   38.9   0.0    1.5e-10   38.8   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.6e-10   38.4   0.0      2e-10   38.0   0.0    1.0  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.6e-10   38.7   0.0    1.8e-10   38.6   0.0    1.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.6e-10   36.8   0.0    4.3e-10   36.6   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.4e-10   36.0   0.0      6e-10   35.8   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    8.7e-10   35.9   0.1      1e-09   35.6   0.1    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    9.1e-10   36.1   0.0    1.1e-09   35.9   0.0    1.0  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.3e-09   35.0   0.0    2.5e-09   34.9   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.5e-09   34.1   0.1    5.2e-09   33.9   0.0    1.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    6.4e-09   32.5   0.0    6.9e-09   32.3   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.2e-09   32.5   0.0    7.8e-09   32.4   0.0    1.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      8e-09   32.8   0.1    9.2e-09   32.6   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.9e-08   31.2   0.0    2.1e-08   31.1   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
      2e-08   32.0   0.0    2.2e-08   31.9   0.0    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.1e-08   30.7   0.0    5.3e-08   30.6   0.0    1.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      6e-08   30.0   0.0    6.6e-08   29.9   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.5e-08   30.1   0.0    7.5e-08   29.9   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-07   29.1   0.0    1.7e-07   28.8   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.1e-07   28.4   0.0    2.4e-07   28.2   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.2e-07   26.8   0.0    4.7e-07   26.7   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    7.4e-07   25.8   0.0    7.4e-07   25.8   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.1e-06   25.2   0.0    1.3e-06   25.1   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.1e-06   23.5   0.0    5.8e-06   23.3   0.0    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-05   21.6   0.0    1.3e-05   21.5   0.0    1.0  1  TIGR00630 uvra: excinuclease ABC subunit A
    2.3e-05   20.9   0.0    2.3e-05   20.9   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    7.9e-05   19.1   0.0    7.9e-05   19.1   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    0.00012   17.5   0.0    0.00012   17.5   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    0.00019   18.0   0.0    0.00021   17.9   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
     0.0003   16.4   0.0    0.00036   16.1   0.0    1.0  1  TIGR00606 rad50: rad50
     0.0004   15.7   0.0    0.00043   15.6   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00058   14.6   0.0    0.00061   14.5   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
      0.001   15.4   0.0     0.0011   15.3   0.0    1.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0029   14.1   0.1     0.0037   13.7   0.0    1.0  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.008   13.5   0.0      0.009   13.3   0.0    1.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
     0.0088   11.4   0.0     0.0097   11.3   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   8.7e-33   6.1e-31     156     251 ..       5     102 ..       2     104 .] 0.93

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 8.7e-33
    TIGR03719 156 dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey.kGtvvavthdryfldnvaeWileldrGegipykg.nysswleqke 251
                  d  +++lsGGek+rval+  l +kPdlllldeP nhld  +++Wl ++l++  + ++++vthdryfl+  ++ i+eldr + + y+g  ys +le+++
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQrQLSLLLVTHDRYFLERTCDDIIELDRAQVHWYRGgGYSGFLEARA 102
                  78899********************************************86516799****************************9637******875 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   8.8e-21   6.2e-19     129     215 ..       2      86 ..       1      91 [. 0.93

  Alignments for each domain:
  == domain 1    score: 66.1 bits;  conditional E-value: 8.8e-21
    TIGR03873 129 sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                  +l dr l+ lsGGe++rv la al q+P lllldeP nhld +a   l + ++++   +   ++  hd  +  + cd+++ ld  +v
  MMETSP1174-20130828|15851_1   2 HLIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQ--RQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  899**************************************99987777888888..9999********************998766 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.3e-17   9.4e-16     123     210 ..       2      86 ..       1      91 [. 0.93

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.3e-17
    TIGR02142 123 hLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                  hL++R  ++LsGGek+Rva++ Al  +P+LLl+DeP   LD    + +  yL +   + ++ +l+v H+   ++r  d ++ l+  +v
  MMETSP1174-20130828|15851_1   2 HLIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS---QRQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  9******************************************99999988765...668999*****************99999888 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   4.1e-16   2.9e-14     105     189 ..       2      84 ..       1      88 [. 0.93

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 4.1e-16
    TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngr 189
                  +l drp+  lsGG+++rv +a al  kp lllldep   ld  +++ l++ ++  ++ + ++l++thd      tcd ++ l++ 
  MMETSP1174-20130828|15851_1   2 HLIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLS--SQRQLSLLLVTHDRYFLERTCDDIIELDRA 84 
                  899***********************************************997..57889*********99999**999988765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   6.5e-16   4.6e-14     452     529 .]       4      81 ..       1      81 [. 0.86

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 6.5e-16
    TIGR02857 452 iGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae.ladkivvl 529
                  i++  + LSgG+++R+aLA al ++ +llllDEP  hLD ++   + + l +  ++ ++llv+H++  +e  +d i++l
  MMETSP1174-20130828|15851_1   4 IDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQLSLLLVTHDRYFLErTCDDIIEL 81 
                  5556689*********************************999999888887.6778999****998776157888865 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   9.2e-16   6.5e-14     136     216 ..       5      83 ..       1      87 [. 0.82

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 9.2e-16
    TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkd 216
                  ++  + lsGGe++rva+a al +kP+l+l deP  +ld ++ +    l + l ++++ +ll+vthd+ + +++ d  +el  
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAID---WLANYLSSQRQLSLLLVTHDRYFLERTcDDIIELDR 83 
                  555578********************************98655...566778999************988764266666665 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     5e-15   3.5e-13     140     219 ..       9      86 ..       2      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 5e-15
    TIGR02982 140 edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkmedGkl 219
                  + lsgG k+rva+a al ++P+l+l deP   ld  +   +  l + l+ ++  ++llvthd   l+  +d i+++++ ++
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA---IDWLANYLSSQRQLSLLLVTHDRYFLErTCDDIIELDRAQV 86 
                  68********************************976...4456677888999**********999846799**9998876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   5.3e-15   3.7e-13     129     206 .]       5      81 ..       1      81 [. 0.89

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 5.3e-15
    TIGR03608 129 kkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae.kadrviel 206
                  ++ + +lsgGek+Rvala +l ++++l+l DEP   LD    + + ++l+++++    +++vtHd +  e ++d +iel
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQ--LSLLLVTHDRYFLErTCDDIIEL 81 
                  677889*******************************************98765..57899****99765269999986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   8.6e-15     6e-13     470     529 ..       9      67 ..       4      68 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 8.6e-15
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  ++lSGGe++R+alA aL ++ ++llLDEP+ hLD ++ + l +  l+ +++   +lvth+
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANY-LSSQRQLSLLLVTHD 67 
                  589*******************************9988776665.567888999*****7 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.6e-14   1.8e-12     135     212 ..       8      83 ..       1      85 [. 0.90

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.6e-14
    TIGR02673 135 peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                   ++lsgGe++Rva+a a+ +kP+lll DeP   lD +    + + l++  +r ++++++thd+ ++er+   ++el++
  MMETSP1174-20130828|15851_1   8 LTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS--QRQLSLLLVTHDRYFLERTCDDIIELDR 83 
                  578*********************************999999999876..556899******************9987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0     3e-14   2.1e-12     119     186 ..       2      67 ..       1      70 [. 0.89

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 3e-14
    TIGR01166 119 gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  +l +rp   lsgGekkrva+a+a+  +pd+llldeP+  ld a  + l++ l+  r+   ++++ thd
  MMETSP1174-20130828|15851_1   2 HLIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQ--LSLLLVTHD 67 
                  7889*****************************************999999987665..456666776 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   3.8e-14   2.7e-12     602     679 ..       9      86 ..       2      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.8e-14
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGri 679
                  +sLSgG ++ vala al ++p++llLDEP+++lD ++ + l + L++  ++  l+lvtH   +Le  +d ii ld+ ++
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQ-RQLSLLLVTHDRYFLErTCDDIIELDRAQV 86 
                  58***********************************99999999876.567899****99999736899999998876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   5.9e-14   4.1e-12     121     210 ..       3      89 ..       1      92 [. 0.90

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 5.9e-14
    TIGR01277 121 ylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                  +++r   +lsGG+++rvala  l ++  +llldep   ld +       l + l+++++l+lllvth+   + ++ + ++ ++  ++++ 
  MMETSP1174-20130828|15851_1   3 LIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAI---DWLANYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQVHWY 89 
                  6788889*********************************8754...45668899***************************99999986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   9.1e-14   6.5e-12     145     226 ..       9      87 ..       4      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 9.1e-14
    TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiv 226
                  + lsGG+k+rva+a al  +p +ll+de++  ld   ++ + n    l+s+++l++llvth+  f +  +d ++ +d+ +++
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLAN---YLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQVH 87 
                  579*********************************9998877...5799**************************999886 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   1.6e-13   1.1e-11     134     213 ..      10      86 ..       6      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.6e-13
    TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgki 213
                   lsGG ++rvaLa al  +P+lLLLDeP   LD    + L + l + qr+l++  ++vthd+      +D i+ ++++++
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQLSL--LLVTHDRYFLERTCDDIIELDRAQV 86 
                  69*********************************99***998865.888875..9*****9887788888888888777 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0     2e-13   1.4e-11     142     216 ..       8      81 ..       2      90 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2e-13
    TIGR00972 142 alsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaff 216
                   +sLsGG ++r+++a al  +P++lLlDeP+  LD  a   + + +++ ++++ +++vth+  + +r  d ++ +
  MMETSP1174-20130828|15851_1   8 LTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQLSLLLVTHDRYFLERTCDDIIEL 81 
                  579***********************************9999999987.5679*********9999999988755 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   3.5e-13   2.5e-11     144     226 ..       9      88 ..       2      93 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 3.5e-13
    TIGR02315 144 dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivf 226
                   +LsGG+++Rva+a al q+p+l+l DEP   LD ++   + ++l   + +++++ ++  H+  + ++ +d i+ l  +++ +
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYL---SSQRQLSLLLVTHDRYFLERTCDDIIELDRAQVHW 88 
                  57*********************************9988888776...5789999999******************9999876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   4.2e-13     3e-11     118     202 ..       4      86 ..       1      90 [. 0.91

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 4.2e-13
    TIGR01188 118 adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGki 202
                   d+++  +sgG ++r+ laa+l ++P++l LDEP   LD  + + + +++++    + ++ll th+ +  ++ +d ++ +d+ ++
  MMETSP1174-20130828|15851_1   4 IDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQ--RQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  589999**********************************9999999998765..47899*****************98888765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   6.1e-13   4.3e-11     122     209 ..       2      86 ..       1      91 [. 0.85

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 6.1e-13
    TIGR00968 122 klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGki 209
                  +l dr  + lsGG+++rvala al  +p++llldep   ld    + l ++l     + +++ ++vthd+       d+i+ l++ ++
  MMETSP1174-20130828|15851_1   2 HLIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYL---SSQRQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  567788899********************************88776666655...566788999*****9998889999998888776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   7.1e-13     5e-11      95     161 ..       5      68 ..       2      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 7.1e-13
    TIGR01187  95 krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                  +r  + lsGG ++rvala a+ +kP++LLlDep   LD    d + + l + q++l   ++lvthD+
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQL--SLLLVTHDR 68 
                  577799**********************************99999987765.6666..67899**96 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   9.4e-13   6.6e-11     138     214 ..      10      84 ..       4      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 9.4e-13
    TIGR00960 138 qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                   lsgGe++rva+a a+ +kP lll deP+  ld +    + + l +   + + +l+ thd+ ++e++   +++l++ 
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQ--RQLSLLLVTHDRYFLERTCDDIIELDRA 84 
                  79*******************************99887777777764..45788999***************99876 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.1e-12   8.1e-11     615     689 ..      10      86 ..       3      94 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.1e-12
    TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr.rRgctciivaH.RLstiRdcdeiivlerGkv 689
                   lsGG+++R+ +A aL ++P +L+lDE    LD ++   + + l  +R  + ++v+H R    R cd+ii l+r +v
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSsQRQLSLLLVTHdRYFLERTCDDIIELDRAQV 86 
                  69**********************************99999999548**********888889***********998 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.8e-12   1.3e-10     130     211 ..       8      87 ..       3      99 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1.8e-12
    TIGR03864 130 vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvl 211
                  + +L+GG+++rv +a al  +P+lLLlDe++  LD ++ + l ++   l+ +++ls+L  th    +e++ d+++ l++ +v+
  MMETSP1174-20130828|15851_1   8 LTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANY---LSSQRQLSLLLVTHDRYFLERTcDDIIELDRAQVH 87 
                  678*********************************998888766...677889********766665433888888888875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.1e-12   1.5e-10     125     211 ..       4      87 ..       1      94 [. 0.90

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.1e-12
    TIGR03410 125 lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevv 211
                   +R    LsGG ++ +a+a aL ++P lllLDeP++ +  + i+ ++   + l+++++l++llv +   f  ++ d ++ l+r +v 
  MMETSP1174-20130828|15851_1   4 IDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLA---NYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQVH 87 
                  5677789********************************98777666...57789999************************99885 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.8e-12     2e-10     139     216 ..       9      83 ..       5      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 2.8e-12
    TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidk 216
                  + lsgg+k+rva+a al  +p +ll de +  ld a+   + + l     + +l++ll+th+   + r cd +  +d+
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLS---SQRQLSLLLVTHDRYFLERTCDDIIELDR 83 
                  579*********************************9887777665...4556678***************9876665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.6e-12   1.8e-10     145     229 ..       5      86 ..       1      90 [. 0.87

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.6e-12
    TIGR02769 145 dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                  d+  + lsGG  +r+++a al  +P l++lde    ld      i  l + l  +  l+ l++thd    ++ ++ ++ ld+ q+
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA---IDWLANYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  555678***************************99999854...44455667788889*********************999886 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   6.1e-12   4.3e-10     454     534 ..      10      89 ..       4      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 6.1e-12
    TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsll.elvdkilvlkdGalkaf 534
                  +LsgG ++R+aLa al  +P l++LDeP   LD +    la+ l +  +r+ + +++th    l ++ d i+ l+  +++ +
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS--QRQLSLLLVTHDRYFLeRTCDDIIELDRAQVHWY 89 
                  8**********************************99999999986..5778889999966655157899998888877765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   8.5e-12     6e-10     617     691 ..      10      86 ..       4      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 8.5e-12
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesksaksrtvlliah.rLstvekadkilvlkkgsv 691
                   lsgG k+r+A+A AL +kP +L+LDe    LD  +++ l +   s+++ ++ll++h r  + + +d+i+ l + +v
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWaAIDWLANYLSSQRQLSLLLVTHdRYFLERTCDDIIELDRAQV 86 
                  69*******************************846777777799999********945555667999999998877 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   1.5e-11     1e-09     130     209 ..       5      82 ..       2      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.5e-11
    TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvle 209
                  d ++++lsgg k+r++la+al + p+ll+ldep+  ld  a   + + l s   r  ++ll th     er cd +  l+
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQ--RQLSLLLVTHDRYFLERTCDDIIELD 82 
                  567899***********************************99999999885..67789***************987665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.5e-11   1.1e-09     125     203 ..      10      85 ..       2      87 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.5e-11
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGk 203
                   lsGG  +Rv +a al  ++ ll+ DeP+  lD ++   + +    l ++r+l++ll+thD   + +  d+++ +++ +
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLAN---YLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQ 85 
                  69*******************************986554444...4677899****************99998777665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.5e-11   2.5e-09     109     174 ..       5      67 ..       1      82 [. 0.89

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.5e-11
    TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  d+  + lsgg k+rva+a al  +p+lllldep   ld  + + l + l     +++++ l+vthd
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYL---SSQRQLSLLLVTHD 67 
                  677899********************************99999998876...46788999999998 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   7.3e-11   5.2e-09     120     186 ..       3      67 ..       1      79 [. 0.89

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 7.3e-11
    TIGR01189 120 ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                  l d+p+++Ls G k+R+ala  l +k  l +LDEP   lD ++++ la+ l++  +r+ + ll th 
  MMETSP1174-20130828|15851_1   3 LIDRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS--QRQLSLLLVTHD 67 
                  568999********************************************986..677778888886 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   9.8e-11   6.9e-09     592     670 ..       9      87 ..       3     103 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 9.8e-11
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkiv 670
                  ++lsGG ++r+ala al ++P +l+lde    ld  + + + + l++  +   +++   r    r++d i+ l++ ++ 
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQVH 87 
                  579*************************************999999876666666666688999**********99985 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.1e-10   7.8e-09     426     498 ..       9      78 ..       1      91 [. 0.50

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.1e-10
    TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdra 498
                    ls Ge++rvala  l ++p +++ldep+  +d  +   +a+ +   r+    + ++v+hd  f+   cd +
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQ---LSLLLVTHDRYFLERTCDDI 78 
                  45555555555555555555555555555555555555444444443332...23455555555555555533 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.3e-10   9.2e-09     138     200 ..      10      68 ..       4      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.3e-10
    TIGR03258 138 qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                   lsGG ++rvala al  +pd+llldep   ld        + l++      +l++l vthdr
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA----IDWLANYLSSQRQLSLLLVTHDR 68 
                  79*****************************99654....4556666666778999******8 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   2.9e-10   2.1e-08     165     200 ..       9      44 ..       3      67 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 2.9e-10
    TIGR00955 165 kglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                   +lSgGe+kR+ala  l ++P lL++DEP   LD +
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWA 44 
                  58*******************************955 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.1e-10   2.2e-08     138     219 ..       5      85 ..       1      90 [. 0.89

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 3.1e-10
    TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGk 219
                  d+  ++Ls G+k+++ ++  l q+p+llllDeP   +  +  +  a+ l++ +++ s+++v hD  f+++  + +  l + +
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQLSLLLVTHDRYFLERTCDDIIELDRAQ 85 
                  566789******************************************987.6789************99988877666655 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   7.5e-10   5.3e-08     123     182 ..       9      66 ..       2      88 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 7.5e-10
    TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                  + +s G k+r+ +a al +kP+ll+ldeP+n ld   i+ l + + s ++  ++++l +h
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQ--LSLLLVTH 66 
                  567889***********************************999988544..55555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   9.3e-10   6.6e-08     128     201 ..       9      79 ..       2      87 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 9.3e-10
    TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdriv 201
                    lsGG ++rv la al ++Pdlll+de+   ld    d l + l    ++ q +++++thd     r +d i+
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYL---SSQRQLSLLLVTHDRYFLERTCDDII 79 
                  579*******************************99988887654...55667788999999666556666555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.1e-09   7.5e-08     144     215 ..      10      79 ..       2      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.1e-09
    TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvv 215
                    sGGekkr  +   +  +P+l +LDe    lD  a+  +a+ +++ r  + +ll++th + +le    d +
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQR--QLSLLLVTHDRYFLERTCDDII 79 
                  57***************************************9998755..689******9999987666655 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.5e-09   1.7e-07     131     210 ..       8      86 ..       4      88 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.5e-09
    TIGR03522 131 igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGki 210
                  ++ ls G ++rv la+al  +P++l+ldeP+  ld   +  + + + +  ++ +++l th    +e  cd++i +++ ++
  MMETSP1174-20130828|15851_1   8 LTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS-QRQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  6789*******************************9998888888766.5667899*****************9999876 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.5e-09   2.4e-07     146     213 ..       7      72 ..       2      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.5e-09
    TIGR02324 146 aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevre 213
                  + +  sGGek+Rv +a al ++  +LLLdeP   Ld a ++   + ++++++   +l+ + hd+   e
  MMETSP1174-20130828|15851_1   7 PLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQ--LSLLLVTHDRYFLE 72 
                  45679***************97778899**********99999998887655..55666667766555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   6.6e-09   4.7e-07     476     552 ..      10      86 ..       2      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 6.6e-09
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGri 552
                  +LsGG k+r+a+a a+ ++  +LLLde  + Ld  + + + + l +  +    lv   r    + +d i+ ld+ ++
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQV 86 
                  7********************************99999999888888777777777778888899999999998776 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     1e-08   7.4e-07     586     661 ..       8      85 ..       2     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1e-08
    TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRiviAH.RLSTirnadrilvleeGr 661
                   ++lSGG ++R+ +A al +kP +ll+DE    LD  +     + l+   + + +++ H R    r +d i+ l+  +
  MMETSP1174-20130828|15851_1   8 LTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQrQLSLLLVTHdRYFLERTCDDIIELDRAQ 85 
                  589********************************9988888887765414566666664555666677777666655 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.8e-08   1.3e-06     610     686 ..       9      86 ..       4     101 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.8e-08
    TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGki 686
                  +s+sgG k+r+ala al  + ++l+lde + +ld      + + l + ++ ++++v+h r  + +  d ii ld+ ++
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQLSLLLVTHdRYFLERTCDDIIELDRAQV 86 
                  79***********************************99999999999999******9778888889******99876 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   8.3e-08   5.8e-06     160     224 ..       6      67 ..       2      72 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.3e-08
    TIGR03415 160 kkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                  +    lsGG ++rv la a+  + d+ll+deP   ld      l +  l+ q++l+  +++v+hd
  MMETSP1174-20130828|15851_1   6 RPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLAN-YLSSQRQLS--LLLVTHD 67 
                  55678*****************************999776666654.445566554..5555665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.8e-07   1.3e-05     482     560 ..       5      80 ..       2      92 .. 0.54

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.8e-07
    TIGR00630 482 eraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetir.eaDyvvd 560
                  +r  ++lsGGe++r++la+ +  +    l +lDePs  L     + L + l + r+l  +l++v hD   ++ + D +++
  MMETSP1174-20130828|15851_1   5 DRPLTSLSGGEKKRVALAAALPQKP--DLLLLDEPSNHLDWAAIDWLANYLSSQRQL--SLLLVTHDRYFLErTCDDIIE 80 
                  4555555555555555555555442..344555555555555555555555555555..455555555555313455544 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.2e-07   2.3e-05     399     438 ..       6      45 ..       2      85 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.2e-07
    TIGR02633 399 lpiarlsGGnqqkavlakllllnprvlildeptrGvdvGa 438
                   p+++lsGG++++  la  l  +p +l+ldep+  +d  a
  MMETSP1174-20130828|15851_1   6 RPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA 45 
                  5778888888888888888888888888888888887665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-06   7.9e-05     470     514 ..      10      54 ..       4      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.1e-06
    TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLe 514
                   LsGG ++R+a+a al +   +L+LDe    LD  +   + + L 
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLS 54 
                  79***************************9999766555555555 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06   0.00012     548     583 ..      10      45 ..       2     101 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.7e-06
    TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvt 583
                  +lsgg++ r++la a+ +  dl lld p ++ld  +
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA 45 
                  589999999999999999999999999999998654 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.9e-06   0.00021     471     546 ..      10      85 ..       3      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.9e-06
    TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgr 546
                   lsgge++r+a+a a+ +   +l+lde +  ld  +   + + + + r+    ++   r    r  d ++ ld+ +
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSSQRQLSLLLVTHDRYFLERTCDDIIELDRAQ 85 
                  69*******************************9888788887777777666666666777778888888887765 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.2e-06   0.00036    1213    1276 ..      18      74 ..      14      80 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.2e-06
    TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvell 1276
                   r+ala  +  +  ++ ldeP   ld   i+ la  l       s qr+l ll++thd  ++e+ 
  MMETSP1174-20130828|15851_1   18 RVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYL-------SSQRQLSLLLVTHDRYFLERT 74  
                   99*******************************998.......579**************9985 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.1e-06   0.00043     760     840 ..      10      87 ..       4     103 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.1e-06
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv.dviivlsdgkis 840
                   lsgg+k+rv+la a+  + d+ lld+p   +d      +  + +  +   ++ + +lvth   +l ++ d ii l   ++ 
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWL-ANYLSSQ---RQLSLLLVTHDRYFLERTcDDIIELDRAQVH 87 
                  69**************************998886554444.3444444...4446789999999997654778877777764 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.6e-06   0.00061    2065    2115 ..       5      55 ..       2      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.6e-06
    TIGR01257 2065 drlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivs 2115
                   dr   + sgg+k++++ a al   p l+lldep+  +d  a   l n + s
  MMETSP1174-20130828|15851_1    5 DRPLTSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS 55  
                   5556788********************************999998887655 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05    0.0011     583     638 ..      10      66 ..       6      87 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.5e-05
    TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyela.kevgitllsvsh 638
                   LsgGek+R+a+A  +  kP   +LDE  + +     d l + +  + +++ll v+h
  MMETSP1174-20130828|15851_1  10 SLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLsSQRQLSLLLVTH 66 
                  59*************************999887666666655441345577777777 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.3e-05    0.0037     468     544 ..       9      83 ..       6      87 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.3e-05
    TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf..eladrliklad 544
                  t+ls G++kr+al +a  ++  +lllde +   d a    + + l     +r  ++l+++hd ryf  +  d +i l  
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAAIDWLANYLSS---QRQLSLLLVTHD-RYFleRTCDDIIELDR 83 
                  89***********99988888899**********9987766555533...344678888997.5553346899999875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00013     0.009     140     197 ..       9      66 ..       3      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00013
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                  +++sGG ++r+ +a +l  +p l+++ ep+  l    a   l   l  + +l+ ++vth
  MMETSP1174-20130828|15851_1   9 TSLSGGEKKRVALAAALPQKPDLLLLdEPSNHLD-WAAIDWLANYLSSQRQLSLLLVTH 66 
                  568**********************989998874.344455788899999999999999 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00014    0.0097     210     244 ..      11      45 ..       6      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
    TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsat 244
                  +sGGe+kRv++a +l  k+ ++++D+ +  LD a 
  MMETSP1174-20130828|15851_1  11 LSGGEKKRVALAAALPQKPDLLLLDEPSNHLDWAA 45 
                  79999999999999999999999999999999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.51
# Mc/sec: 269.15
//
Query:       MMETSP1174-20130828|15853_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|15854_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 860.20
//
Query:       MMETSP1174-20130828|15852_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 849.68
//
Query:       MMETSP1174-20130828|15857_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|15855_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 813.22
//
Query:       MMETSP1174-20130828|15856_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 937.82
//
Query:       MMETSP1174-20130828|15860_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 120.26
//
Query:       MMETSP1174-20130828|15859_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   21.7   0.0     0.0054   14.0   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0067   13.7   0.0       0.04   11.1   0.0    1.9  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0093   13.2   0.0       0.34    8.1   0.0    2.4  3  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0014       1.9       3      25 ..      80     102 ..      78     114 .. 0.80
   2 !   14.0   0.0     4e-06    0.0054      52     118 ..     162     227 ..     156     258 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0014
    TIGR03695   3 pvlvlLHGflgskedwqalieel 25 
                  +++++LHGf   ++d+++l +  
  MMETSP1174-20130828|15859_1  80 QCVLMLHGFGAHNNDFTNLPSVA 102
                  689*************9987655 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4e-06
    TIGR03695  52 dfeeaaqellkelleklkiekviLvGYSlGGRialalaleape..rleglilesaspGLeseeeraeRl 118
                  ++ + ++e++++    l  +k+iL G+S G+  a++lal+ p   ++ g+ + s+ p +   e+ ++R+
  MMETSP1174-20130828|15859_1 162 NMVTLVDEISARFA-DLPVSKFILAGFSQGAMTAMDLALHLPPdkKVAGVTVISGGPIVV--EQWSQRM 227
                  66677777555544.5599*********************99755799999999887554..3344444 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.074     1e+02     181     249 ..      18      88 ..       9      89 .. 0.74
   2 !   11.1   0.0   2.9e-05      0.04      63     128 ..     164     229 ..     157     244 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.074
    TIGR02427 181 rdadlrerleeiavPtlviaG..deDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdf 249
                  ++ dl++r++e +v +   aG  +   s+P  ++++   ++ g +  ++  + H++ + qp++   +l +f
  MMETSP1174-20130828|15859_1  18 EKPDLQQRAREAKVRLASAAGgpRSTRSSPGVNIETRDMTLGGYTCIVMGTSEHISGASQPDQCVLMLHGF 88 
                  56688888888888888887733455677777777777777777777888899*******99988777766 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.9e-05
    TIGR02427  63 edladdvlallDalgiekaavcGlSlGGliaqaLaarrp..drvealvlsntaakigtaesWeaRiaa 128
                   +l+d++ a +  l ++k+ ++G S G ++a+ La++ p  ++v+ + +++    +   e W++R+++
  MMETSP1174-20130828|15859_1 164 VTLVDEISARFADLPVSKFILAGFSQGAMTAMDLALHLPpdKKVAGVTVISGGPIV--VEQWSQRMQH 229
                  5788999999999***********************98643456665555554444..3689999874 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.87   1.2e+03     227     244 ..      81      98 ..      69     107 .. 0.66
   2 !    8.1   0.0   0.00025      0.34      63     113 ..     163     215 ..     155     232 .. 0.80
   3 !    2.8   0.0    0.0098        13     199     254 ..     233     287 ..     218     291 .] 0.74

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.87
    TIGR03611 227 aelklleyGghasnvtdp 244
                  + l+l  +G+h    t+ 
  MMETSP1174-20130828|15859_1  81 CVLMLHGFGAHNNDFTNL 98 
                  345666778887777765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00025
    TIGR03611  63 iaalaadvlelldaldiekahvvGhalGgliglelalrkpe..rlaklvlina 113
                  +  l +++ + + +l ++k+ + G + G++ +++lal+ p   ++a +++i +
  MMETSP1174-20130828|15859_1 163 MVTLVDEISARFADLPVSKFILAGFSQGAMTAMDLALHLPPdkKVAGVTVISG 215
                  56778899999999***********************9985456766666654 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.0098
    TIGR03611 199 lpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldf 254
                   +v +   + D++ P+++s    ++L +++   + + gha   t p ++  ++l f
  MMETSP1174-20130828|15859_1 233 IKVFITHGSSDMVLPFNASGW-NKQLLESSGAEVIFEGHAGGHTLPPEIIPKILGF 287
                  5788999999******99975.5666677777777889998888777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 960.22
//
Query:       MMETSP1174-20130828|15861_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.54
# Mc/sec: 163.76
//
Query:       MMETSP1174-20130828|15868_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.39
# Mc/sec: 165.83
//
Query:       MMETSP1174-20130828|15869_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.4   0.8      0.016   13.1   0.6    1.3  1  TIGR04135 FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family
      0.019   10.8   0.0      0.022   10.6   0.0    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR04135  FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   7.7e-06     0.016      17      47 ..      34      65 ..      24      72 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.7e-06
    TIGR04135 17 eeedqamakCigvqCtsC..tCaCsCriskeee 47
                 + ++  + +C  +qC++     aCsC  ++ ++
  MMETSP1174-20130828|15869_1 34 KPFK-FAVSCLIMQCNGAgvHSACSCHWDGAND 65
                 4453.5679*99****86227899998887665 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.1e-05     0.022      90     147 ..      18      75 ..       9      76 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.1e-05
    TIGR02441  90 vtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpe 147
                  ++++  ++ k l+ ++k  k  v+ +   c G G+  a +ch+  a ++   ++ +pe
  MMETSP1174-20130828|15869_1  18 TDLICDGSMKTLTDMNKPFKFAVSCLIMQCNGAGVHSACSCHWDGANDNVARVIWTPE 75 
                  567788899999*******************************999988888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 254.08
//
Query:       MMETSP1174-20130828|15874_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.47
# Mc/sec: 393.16
//
Query:       MMETSP1174-20130828|15877_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 219.05
//
Query:       MMETSP1174-20130828|15878_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.21s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|15881_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|15879_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.60
# Mc/sec: 666.54
//
Query:       MMETSP1174-20130828|15885_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1174-20130828|15886_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 402.11
//
Query:       MMETSP1174-20130828|15887_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.6   0.2     0.0045   14.7   0.1    1.6  1  TIGR02959 SigZ: RNA polymerase sigma factor, SigZ family


Domain annotation for each model (and alignments):
>> TIGR02959  SigZ: RNA polymerase sigma factor, SigZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.1e-06    0.0045     108     136 ..     175     203 ..     113     210 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
    TIGR02959 108 alelteleGlsqkevaeklGlslsgaKsR 136
                  a  l+ ++G++++ +a+ +G+sl++a sR
  MMETSP1174-20130828|15887_1 175 ARALASYHGVTRQRLAQLMGISLTTAESR 203
                  456899**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.88
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|15891_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|15883_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-103  329.5   1.9    4.1e-07   27.7   0.0   15.2 15  TIGR00756 PPR: pentatricopeptide repeat domain
      3e-05   21.9   0.1        7.9    4.4   0.0    5.6  6  TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family
     0.0016   14.2   0.2     0.0059   12.3   0.1    1.8  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.016   12.8   0.1         11    3.7   0.0    4.6  5  TIGR00142 hycI: hydrogenase maturation peptidase HycI
       0.64    5.9   5.2        2.1    4.2   0.1    3.4  3  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.8e-08   3.1e-05       3      29 ..      96     122 ..      94     123 .. 0.95
   2 !   17.6   0.0   7.9e-07   0.00065       1      35 []     128     162 ..     128     162 .. 0.95
   3 !   23.1   0.0   1.4e-08   1.1e-05       1      34 [.     163     196 ..     163     197 .. 0.96
   4 !   27.7   0.0     5e-10   4.1e-07       1      35 []     198     232 ..     198     232 .. 0.96
   5 !   20.9   0.0   6.9e-08   5.7e-05       1      34 [.     233     266 ..     233     267 .. 0.95
   6 !   16.4   0.1   1.9e-06    0.0015       1      27 [.     268     294 ..     268     296 .. 0.96
   7 !   21.4   0.0   4.9e-08     4e-05       1      35 []     307     341 ..     307     341 .. 0.97
   8 !   26.2   0.0   1.5e-09   1.2e-06       1      35 []     342     376 ..     342     376 .. 0.96
   9 !   16.8   0.0   1.4e-06    0.0012       1      34 [.     377     410 ..     377     411 .. 0.95
  10 !   26.5   0.0   1.1e-09   9.3e-07       1      34 [.     412     445 ..     412     446 .. 0.96
  11 !   16.0   0.0   2.6e-06    0.0021       1      35 []     447     481 ..     447     481 .. 0.96
  12 !   26.7   0.0   9.8e-10     8e-07       1      34 [.     482     515 ..     482     516 .. 0.96
  13 !   26.3   0.0   1.3e-09   1.1e-06       2      32 ..     518     548 ..     517     551 .. 0.94
  14 !   18.8   0.0   3.2e-07   0.00027       1      35 []     552     587 ..     552     587 .. 0.92
  15 ?    4.0   0.0     0.017        14       1      34 [.     588     621 ..     588     622 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.8e-08
    TIGR00756   3 yntlisglckagrveeAlelfdeMker 29 
                  y ++is +++a+++++A+el++eM+e+
  MMETSP1174-20130828|15883_1  96 YAAIISICGRAREWHKAVELLHEMHEK 122
                  899*********************985 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7.9e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v+ n+ is++ k g++++Alel+  +++ g++P++
  MMETSP1174-20130828|15883_1 128 VCINAAISACEKGGQWKKALELLGNIEAFGLKPNV 162
                  5789*****************************96 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.4e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++++ is++ k g+++ A+ ++++M+ +g++Pd
  MMETSP1174-20130828|15883_1 163 ISFSAAISACEKCGQWDAAMGVMRDMRHQGVSPD 196
                  58999****************************9 PP

  == domain 4    score: 27.7 bits;  conditional E-value: 5e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++n+ is+++kag++ +Ale++de++ + i+Pd+
  MMETSP1174-20130828|15883_1 198 ICFNAAISACGKAGQWAKALEILDEIQTCSIRPDV 232
                  58*******************************96 PP

  == domain 5    score: 20.9 bits;  conditional E-value: 6.9e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++n+ is++ k +++e Al+l+d+M+ +g++ +
  MMETSP1174-20130828|15883_1 233 ISFNAAISACEKGRQWEQALRLMDDMQVHGVKAN 266
                  58****************************9977 PP

  == domain 6    score: 16.4 bits;  conditional E-value: 1.9e-06
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                  +t+n+ is++ k g++e Ale +++M+
  MMETSP1174-20130828|15883_1 268 ITFNAAISACEKCGEWEMALETLHRMR 294
                  69************************7 PP

  == domain 7    score: 21.4 bits;  conditional E-value: 4.9e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v+y++ +s++ k ++ e++l+l+ eM+  gi P++
  MMETSP1174-20130828|15883_1 307 VSYSAAMSACEKGRQCEKVLSLLSEMRQYGIQPNV 341
                  79*******************************96 PP

  == domain 8    score: 26.2 bits;  conditional E-value: 1.5e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++y + is++ k +++e A+ +f+eM+++gi+Pd+
  MMETSP1174-20130828|15883_1 342 ISYGAAISACEKTRKWELAMHFFHEMLDCGIKPDV 376
                  589******************************96 PP

  == domain 9    score: 16.8 bits;  conditional E-value: 1.4e-06
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  v++n+ is++ k g++  Al l++ Mk +g+  d
  MMETSP1174-20130828|15883_1 377 VSFNAAISACEKGGQWQWALNLLETMKQQGMPAD 410
                  79****************************9887 PP

  == domain 10    score: 26.5 bits;  conditional E-value: 1.1e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++n+ is++ k +++e Alel++eM+ +gi P+
  MMETSP1174-20130828|15883_1 412 ISFNAAISACEKGKQFEMALELLEEMQQSGIQPS 445
                  58*******************************8 PP

  == domain 11    score: 16.0 bits;  conditional E-value: 2.6e-06
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++n+ is++ k+ ++e+A++l+++ +++++ Pd+
  MMETSP1174-20130828|15883_1 447 ISFNAAISACEKSAQFEKAMSLLNDVVKSNLDPDV 481
                  58*******************************96 PP

  == domain 12    score: 26.7 bits;  conditional E-value: 9.8e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  ++yn+ is++ ka ++e+Al+l+deM++rgi+P+
  MMETSP1174-20130828|15883_1 482 ISYNATISACEKAAQWEHALRLLDEMVKRGIKPT 515
                  58*******************************8 PP

  == domain 13    score: 26.3 bits;  conditional E-value: 1.3e-09
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergiv 32 
                  t+n+ is++ k g++e+Al l++eM+e+g+ 
  MMETSP1174-20130828|15883_1 518 TFNAAISACEKGGQWEKALGLLQEMQEQGVT 548
                  9****************************85 PP

  == domain 14    score: 18.8 bits;  conditional E-value: 3.2e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMker.givPda 35 
                  v++n+ is++ k+g++e+Alel+ + + + g++P+a
  MMETSP1174-20130828|15883_1 552 VSFNAAISACEKSGQWEKALELLGDVIGQdGVEPNA 587
                  79*********************9997777999995 PP

  == domain 15    score: 4.0 bits;  conditional E-value: 0.017
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  vt+ ++i  l k+ r +e  e +++ ++rgi +d
  MMETSP1174-20130828|15883_1 588 VTFAAVIQVLEKSERRDESSETYRQALARGIFCD 621
                  79****************************9887 PP

>> TIGR01987  HI0074: nucleotidyltransferase substrate binding protein, HI0074 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.3   1.9e+03       6      32 ..     110     135 ..     107     138 .. 0.70
   2 ?    0.8   0.0      0.13     1e+02       5      48 ..     213     258 ..     209     286 .. 0.77
   3 ?    0.2   0.0      0.19   1.6e+02       6      52 ..     323     371 ..     319     384 .. 0.79
   4 ?    3.8   0.0     0.014        12       6      55 ..     393     443 ..     390     456 .. 0.76
   5 !    4.4   0.0    0.0096       7.9       3      50 ..     460     509 ..     458     524 .. 0.83
   6 ?    3.4   0.0      0.02        16       4      62 ..     531     590 ..     528     622 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.3
    TIGR01987   6 ekalvslkdallkdltndiilidgviq 32 
                  +ka+  l+++   +lt+d++ i+++i 
  MMETSP1174-20130828|15883_1 110 HKAVELLHEM-HEKLTPDVVCINAAIS 135
                  5666666655.4568999999999986 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.13
    TIGR01987   5 fekalvslkdallkdltndiilidgviqkFe..ftfELawkllkey 48 
                  + kal  l ++++  + +d+i  +++i   e   ++E a++l+ ++
  MMETSP1174-20130828|15883_1 213 WAKALEILDEIQTCSIRPDVISFNAAISACEkgRQWEQALRLMDDM 258
                  6789999999999999999988999998776335889999988663 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.19
    TIGR01987   6 ekalvslkdallkdltndiilidgviqkFeft..fELawkllkeylaqe 52 
                  ek l  l+++ +  +++++i   ++i   e t  +ELa+ ++ e+l   
  MMETSP1174-20130828|15883_1 323 EKVLSLLSEMRQYGIQPNVISYGAAISACEKTrkWELAMHFFHEMLDCG 371
                  67788899999999999988888999998865449*******9999765 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.014
    TIGR01987   6 ekalvslkdallkdltndiilidgviqkFe..ftfELawkllkeylaqegin 55 
                  + al+ l+ ++++ +  d+i  +++i   e   +fE+a+ ll e ++q gi+
  MMETSP1174-20130828|15883_1 393 QWALNLLETMKQQGMPADVISFNAAISACEkgKQFEMALELLEE-MQQSGIQ 443
                  56889999999999999999999999987633699999999965.6888884 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.0096
    TIGR01987   3 ekfekalvslkdallkdltndiilidgviqkFe..ftfELawkllkeyla 50 
                   +feka+  l+d+ + +l +d+i  +++i   e   ++E a++ll e+++
  MMETSP1174-20130828|15883_1 460 AQFEKAMSLLNDVVKSNLDPDVISYNATISACEkaAQWEHALRLLDEMVK 509
                  589******************9999****998844589999999988765 PP

  == domain 6    score: 3.4 bits;  conditional E-value: 0.02
    TIGR01987   4 kfekalvslkdallkdltndiilidgviqkFef..tfELawkllkeylaqegindiaansp 62 
                  ++ekal  l++++++ +t  ++  +++i   e   ++E a+ ll + + q+g++  +a ++
  MMETSP1174-20130828|15883_1 531 QWEKALGLLQEMQEQGVTSTVVSFNAAISACEKsgQWEKALELLGDVIGQDGVE-PNAVTF 590
                  57999999************99999999998854489**************994.334444 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   7.2e-06    0.0059     206     343 ..     459     599 ..     408     617 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-06
    TIGR02917 206 sgnieeAlaayrkaielkpnaiaallalatill.eegefeeAekkadallkkapnspkaaylkAlvdfqkk.kfedAretlqaalksapeylpalllaGaseyql.geleqAeqylnqilkaaPnshqArrllAaiqLkeg 343
                  s ++e+A+  ++++++ + +     +++  ++  ++ + e+A   +d+++k+  +  ++++  A+ +  k+ + e+A+  lq++  ++       + a +s+ ++ g++e+A + l +++ ++  +++A++ +A+iq  e+
  MMETSP1174-20130828|15883_1 459 SAQFEKAMSLLNDVVKSNLDPDVISYNATISACeKAAQWEHALRLLDEMVKRGIKPTSTTFNAAISACEKGgQWEKALGLLQEMQEQGVTSTVVSFNAAISACEKsGQWEKALELLGDVIGQDGVEPNAVTFAAVIQVLEK 599
                  335555666666665544433333333322222144566666666666666666666666666665555531466666666666666666666666666666643366666666666666666666666666666665444 PP

>> TIGR00142  hycI: hydrogenase maturation peptidase HycI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.36     3e+02     106     125 ..     152     171 ..     146     180 .. 0.84
   2 ?   -1.5   0.0      0.51   4.2e+02     104     125 ..     220     241 ..     216     247 .. 0.83
   3 ?    0.6   0.0      0.11        92     109     125 ..     334     350 ..     326     362 .. 0.82
   4 ?    0.3   0.0      0.14   1.2e+02     107     125 ..     367     385 ..     358     404 .. 0.82
   5 ?    3.7   0.0     0.013        11     110     130 ..     440     460 ..     429     476 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.36
    TIGR00142 106 eiillGiqPeivefytglse 125
                  +i  +G++P+++ f  ++s 
  MMETSP1174-20130828|15883_1 152 NIEAFGLKPNVISFSAAISA 171
                  67789**********99985 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.51
    TIGR00142 104 aaeiillGiqPeivefytglse 125
                    ei    i+P+++ f  ++s 
  MMETSP1174-20130828|15883_1 220 LDEIQTCSIRPDVISFNAAISA 241
                  56788889********999985 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.11
    TIGR00142 109 llGiqPeivefytglse 125
                    GiqP+++ ++ ++s 
  MMETSP1174-20130828|15883_1 334 QYGIQPNVISYGAAISA 350
                  57**********99986 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.14
    TIGR00142 107 iillGiqPeivefytglse 125
                  ++  Gi+P++v f  ++s 
  MMETSP1174-20130828|15883_1 367 MLDCGIKPDVVSFNAAISA 385
                  5567**********99986 PP

  == domain 5    score: 3.7 bits;  conditional E-value: 0.013
    TIGR00142 110 lGiqPeivefytglseevkda 130
                   GiqP i+ f  ++s   k a
  MMETSP1174-20130828|15883_1 440 SGIQPSIISFNAAISACEKSA 460
                  69**********999876665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.11        92     262     281 ..     157     176 ..     141     216 .. 0.76
   2 ?    1.0   0.0     0.023        19     719     743 ..     257     281 ..     249     292 .. 0.86
   3 ?    4.2   0.1    0.0025       2.1     242     390 ..     457     606 ..     426     622 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.11
    TIGR00630 262 eleprlfsfnsplgaCpeCk 281
                   l+p++ sf + + aC++C 
  MMETSP1174-20130828|15883_1 157 GLKPNVISFSAAISACEKCG 176
                  47788888888888888884 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.023
    TIGR00630 719 eakarGykagrfsfnvkgGrCeaCk 743
                  + ++ G ka r  fn    +Ce+C 
  MMETSP1174-20130828|15883_1 257 DMQVHGVKANRITFNAAISACEKCG 281
                  5678999*****************5 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0025
    TIGR00630 242 kkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldpeki...vdeeelsleeaaivalkksassyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkre..kekekarlkkefeGvleelerryketes 390
                  +k+ +f +ka     +++ ++l+p++ s+n+ + aC++ +     l+l +e++   +++++++++  ai a++k     + + l  l e  +  +  ++ ++++ + +    G+ e++ e       +        +f  v++ le+  + +es
  MMETSP1174-20130828|15883_1 457 EKSAQF-EKAMSLLNDVVKSNLDPDVISYNATISACEKAAQWEHALRLLDEMVkrgIKPTSTTFNA-AISACEKG--GQWEKALGLLQEMQEQGVTSTVVSFNAAISACEKSGQWEKALELLGDviGQDGVEPNAVTFAAVIQVLEKSERRDES 606
                  444444.44444456677789999999999999999999888888888777772223333333333.33333333..33445555566666666777777777777777777776666665555323333356667777777777776555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.67
# Mc/sec: 1434.15
//
Query:       MMETSP1174-20130828|15890_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 948.24
//
Query:       MMETSP1174-20130828|15894_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|15895_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 837.19
//
Query:       MMETSP1174-20130828|15897_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|15900_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.5   0.0      0.036   12.2   0.0    1.0  1  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-06     0.036      28      91 ..      15      78 ..       8      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 8.7e-06
    TIGR03627 28 kvpvelieielarlkilePlllaedvakevDidvkvsGGGimgqaeaartaiarglveftgdke 91
                 ++pv ++++ + ++ki +P ++ +d  + +   ++ + G +m+   a+r a + ++ ++t++++
  MMETSP1174-20130828|15900_1 15 SLPVHMFPKSFRHAKIPNPARVCDDCFEVLHDRLQHQQGPYMSPLPASRRADSLSVTQYTQQSN 78
                 689********************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.77
# Mc/sec: 159.42
//
Query:       MMETSP1174-20130828|15902_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.48
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|15903_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 867.83
//
Query:       MMETSP1174-20130828|15906_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 430.70
//
Query:       MMETSP1174-20130828|15907_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|15909_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 309.13
//
Query:       MMETSP1174-20130828|15908_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1233.94
//
Query:       MMETSP1174-20130828|15916_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 322.21
//
Query:       MMETSP1174-20130828|15914_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.55
# Mc/sec: 304.77
//
Query:       MMETSP1174-20130828|15911_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1164.61
//
Query:       MMETSP1174-20130828|15917_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|15918_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1174-20130828|15923_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 143.99
//
Query:       MMETSP1174-20130828|15922_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.54
# Mc/sec: 476.63
//
Query:       MMETSP1174-20130828|15926_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 176.99
//
Query:       MMETSP1174-20130828|15929_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 755.64
//
Query:       MMETSP1174-20130828|15932_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|15935_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.59
# Mc/sec: 194.63
//
Query:       MMETSP1174-20130828|15937_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|15940_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|15942_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|15944_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 888.25
//
Query:       MMETSP1174-20130828|15946_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 319.97
//
Query:       MMETSP1174-20130828|15946_2  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|15943_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-06   24.0   0.0    3.9e-06   24.0   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.8e-05   20.5   0.2    4.8e-05   20.5   0.1    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00053   17.5   0.0    0.00089   16.7   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0034   13.7   0.1     0.0034   13.7   0.1    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
      0.011   13.2   0.1      0.017   12.6   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
      0.021   12.9   1.7       0.26    9.4   0.1    3.1  3  TIGR01030 rpmH_bact: ribosomal protein L34


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.7e-09   3.9e-06     233     286 ..      71     124 ..      62     133 .. 0.94
   2 ?   -6.0   9.1         6   4.1e+03      42     105 ..     615     678 ..     604     699 .. 0.56

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 5.7e-09
    TIGR01622 233 EqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlel 286
                  E+ L++i++  G+i    ++++++t ++ G+ F++F+ a+ea  A+++ NG  l
  MMETSP1174-20130828|15943_1  71 ENVLKKIYQQVGNITRTYMPMNDKTKKTYGFVFVEFTSAKEAETAQKRTNGYKL 124
                  889************************************************876 PP

  == domain 2    score: -6.0 bits;  conditional E-value: 6
    TIGR01622  42 skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrek..e 105
                   ++ +r+f+r dr++ k+r+    + k +++ r r r +er+      + ++er  rr + ++  +
  MMETSP1174-20130828|15943_1 615 LRKYERKFERADREKKKFRELAALEGKWNDRARFRARMDERNA--ALSKIKEERIRRRGGYDEddD 678
                  3556788888888888888887777777777777777776433..333233334334333333222 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1     7e-08   4.8e-05     192     245 ..      71     125 ..      50     637 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7e-08
    TIGR01628 192 edklrelFakfGeitSaiv.kkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                  e+ l++++++ G+it   + ++d+ +++ gf fv++ +a +A+ A  + ng k++
  MMETSP1174-20130828|15943_1  71 ENVLKKIYQQVGNITRTYMpMNDKTKKTYGFVFVEFTSAKEAETAQKRTNGYKLD 125
                  4555666666666655443244455555556666666666666666666665555 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06   0.00089     270     342 ..      52     132 ..      41     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
    TIGR01661 270 ycifvynl....spdtd..eavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg.nrvlqv 342
                   ci v nl    +++    e+vl +++ + G ++   +  + +t+k  G+ fv  t  +ea +a +  nGy+l  n+++ v
  MMETSP1174-20130828|15943_1  52 SCIIVDNLpivdASKVSklENVLkKIYQQVGNITRTYMPMNDKTKKTYGFVFVEFTSAKEAETAQKRTNGYKLDkNHIFEV 132
                  57777777433322211236777689*******9999977777*****************************962455555 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1     5e-06    0.0034     432     496 ..      72     130 ..      50     140 .. 0.73
   2 ?   -4.8   9.4       2.2   1.5e+03       3      72 ..     621     686 ..     613     702 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5e-06
    TIGR01642 432 eiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvv 496
                  ++l   k+  ++ G+++   +P   k++   +  G vF+e+++ ++ae A++  nG k +k+ + 
  MMETSP1174-20130828|15943_1  72 NVL---KKIYQQVGNITRTYMPMNDKTK---KTYGFVFVEFTSAKEAETAQKRTNGYKLDKNHIF 130
                  333...4444556788888888774443...44688*************************9985 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 2.2
    TIGR01642   3 kekdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds...rr 72 
                  k+++ +rEk++ r+    + +  +R r r r  +R   +   s+ k++R R+r  yd+ +    ++++   +r
  MMETSP1174-20130828|15943_1 621 KFERADREKKKFRELAALEGKWNDRARFRARMDER---NAALSKIKEERIRRRGGYDEDD----DDHYiieKR 686
                  45555666666665544333333333333333322...34479999*****999998766....444422233 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05     0.017     124     174 ..      74     124 ..      49     135 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.5e-05
    TIGR01659 124 lyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitv 174
                  l  +++ +g i    +  + kt  ++g+ fv+f+s  ++  a k  ng  +
  MMETSP1174-20130828|15943_1  74 LKKIYQQVGNITRTYMPMNDKTKKTYGFVFVEFTSAKEAETAQKRTNGYKL 124
                  66788999999888887788***************************9866 PP

>> TIGR01030  rpmH_bact: ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00037      0.26       2      18 ..      85     101 ..      84     103 .. 0.93
   2 ?   -1.5   0.0      0.96   6.6e+02       5      31 ..     299     326 ..     298     327 .. 0.65
   3 ?    0.3   0.1      0.27   1.8e+02      18      25 ..     648     655 ..     640     658 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00037
    TIGR01030   2 kRTyqPsnlkrkrthGF 18 
                   RTy P n k k+t+GF
  MMETSP1174-20130828|15943_1  85 TRTYMPMNDKTKKTYGF 101
                  5**************** PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.96
    TIGR01030   5 yqPsnlkrkrthGFraRMaT.knGRkvl 31 
                   qP+  + ++   + aRMa  k G  v+
  MMETSP1174-20130828|15943_1 299 NQPQAFQWSQDGNYVARMAKdKSGGDVI 326
                  577777777777789***7425666665 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.27
    TIGR01030  18 FraRMaTk 25 
                  FraRM  +
  MMETSP1174-20130828|15943_1 648 FRARMDER 655
                  *****866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.80
# Mc/sec: 1159.85
//
Query:       MMETSP1174-20130828|15947_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1022.27
//
Query:       MMETSP1174-20130828|15952_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.86
# Mc/sec: 630.79
//
Query:       MMETSP1174-20130828|15953_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 178.30
//
Query:       MMETSP1174-20130828|15951_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1209.11
//
Query:       MMETSP1174-20130828|15957_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   11.1   2.8       0.76    7.9   0.0    2.2  2  TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family


Domain annotation for each model (and alignments):
>> TIGR04129  CxxH_BA5709: CxxH/CxxC protein, BA_5709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00019      0.76      19      40 ..      37      58 ..      32      62 .. 0.89
   2 ?    3.3   0.4     0.005        21      33      45 ..      80      92 ..      70      94 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00019
    TIGR04129 19 yeeaPdlekleeekklskkCey 40
                 + ++Pd++kl    k s kC++
  MMETSP1174-20130828|15957_1 37 KRDPPDMQKLMRIAKQSDKCSF 58
                 6789****************98 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.005
    TIGR04129 33 klskkCeyCeeeA 45
                 ++++ Ce+C++e+
  MMETSP1174-20130828|15957_1 80 DPNVCCELCSKEP 92
                 57889*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 299.33
//
Query:       MMETSP1174-20130828|15961_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   44.6   1.9    1.7e-12   44.4   0.0    1.8  2  TIGR00934 2a38euk: potassium uptake protein, Trk family
    2.3e-09   34.7   0.2    2.9e-09   34.3   0.1    1.1  1  TIGR00933 2a38: potassium uptake protein, TrkH family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3     0.032        66     369     404 ..      26      61 ..      14     108 .. 0.58
   2 !   44.4   0.0   8.3e-16   1.7e-12     756     832 ..     194     272 ..     183     276 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.032
    TIGR00934 369 vkaakrkkknfkkreanlklfeksryakksdrneed 404
                   +a ++k+k+ ++++++ +  ++++  + ++ ++  
  MMETSP1174-20130828|15961_1  26 DDAEQQKQKQQRQQQQHHRHHQHPNTGTANNATTLP 61 
                  334444444444444444444554444444444444 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 8.3e-16
    TIGR00934 756 icIcEgdkikdvqkpnfnvfailfEvvSAYGtvGlslGysns.......nqsfsaqfttlsKlviIavlirGrnrglpysldra 832
                  icI +++k +      +  f+ilfEvvS +G+vGlslG  ++       + s+    t+  K+++I+v+i Gr r +p  +  a
  MMETSP1174-20130828|15961_1 194 ICIIDKEKTES-----MHPFTILFEVVSCFGNVGLSLGAGDQddvdgdvSRSLGVFATNAQKILLIVVMIFGRTRWMPDRMTSA 272
                  56666666555.....778*********************999****99999*9999*******************99877666 PP

>> TIGR00933  2a38: potassium uptake protein, TrkH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.4e-12   2.9e-09     326     391 .]     184     261 ..     151     261 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.4e-12
    TIGR00933 326 vsiflvfllifllslleliasgldfltllfevvsAfatvGlsvG.............sltaeLsdlgklilivlMflGR 391
                  v+i+ ++ + ++++     ++ + ++t+lfevvs+f++vGls+G             sl    +++ k++liv+M++GR
  MMETSP1174-20130828|15961_1 184 VMICWMAWIGICIIDK-EKTESMHPFTILFEVVSCFGNVGLSLGagdqddvdgdvsrSLGVFATNAQKILLIVVMIFGR 261
                  3344444444443333.3678899*****************************66533333336789***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 976.11
//
Query:       MMETSP1174-20130828|15962_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   48.4   0.0    1.6e-13   48.0   0.0    1.1  1  TIGR00871 zwf: glucose-6-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00871  zwf: glucose-6-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.9e-17   1.6e-13     344     441 ..       2      97 ..       1     105 [. 0.89

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.9e-17
    TIGR00871 344 teiviqfkkvplnlfkesekdaepenelviriqPdegvelklnakkpglelevrevkldfsyasafkea.lpeaYerLlldallGdqtlfaredeveea 441
                  +e++i++ + p n+       + + nelv +iqPd+    k + kkpg++ e   + ld++y s+fk+a l++aYer+ l+a+lG+++lf+ + e++ a
  MMETSP1174-20130828|15962_1   2 AEVRITYNEQPNNVALYGDVGTREPNELVCHIQPDD---XKTQGKKPGITQEPAGTVLDMRYGSHFKDAyLADAYERMFLNAFLGESALFVSSPEISDA 97 
                  79******99988755555555556**********8...599**************************99**********************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.70
# Mc/sec: 411.05
//
Query:       MMETSP1174-20130828|15964_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.56
# Mc/sec: 143.77
//
Query:       MMETSP1174-20130828|15965_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.81
# Mc/sec: 96.14
//
Query:       MMETSP1174-20130828|15967_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.60
# Mc/sec: 136.39
//
Query:       MMETSP1174-20130828|15968_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.48
# Mc/sec: 151.24
//
Query:       MMETSP1174-20130828|15971_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 333.64
//
Query:       MMETSP1174-20130828|15972_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.64
# Mc/sec: 158.80
//
Query:       MMETSP1174-20130828|15974_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.51
# Mc/sec: 121.64
//
Query:       MMETSP1174-20130828|15977_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|15980_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 244.32
//
Query:       MMETSP1174-20130828|15979_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   33.1   0.0    1.9e-08   32.3   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin
    3.4e-07   28.0   0.0    6.4e-07   27.1   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    4.6e-07   27.8   0.0    7.4e-07   27.2   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.1e-05   23.1   0.0    2.2e-05   22.2   0.0    1.5  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.9e-11   1.9e-08       2      69 ..      82     149 ..      81     163 .. 0.88

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.9e-11
    TIGR02180   2 vvfsKsyCpYckkakelLkklk.vkkalevveldkl.engselqdyLkeltgqrtVPrifingkfiGGsd 69 
                  vvf     p+++ka  +L++++  +  ++ v ld+  ++g+ l++ L +ltgq++VP+++i+g  +GG d
  MMETSP1174-20130828|15979_1  82 VVFTWEKSPFSNKALVALSDEAgAN--VKNVRLDDPwDEGNLLRAELGRLTGQTSVPSVWIGGVYVGGFD 149
                  79999999***********997444..999***9976899****************************87 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.2e-10   6.4e-07       9      72 ..      80     149 ..      73     151 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.2e-10
    TIGR02190   9 svsvftkpGCPfCakakavLke.kGldfeeivLgkdi.rtrslra....vtGattvPqvfinGkliGgsd 72 
                    +vft    Pf  ka  +L +  G + +++ L+    ++  lra    +tG+t+vP v+i+G+++Gg+d
  MMETSP1174-20130828|15979_1  80 PCVVFTWEKSPFSNKALVALSDeAGANVKNVRLDDPWdEGNLLRAelgrLTGQTSVPSVWIGGVYVGGFD 149
                  5799************999975269********98652344455444449******************98 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.2e-10   7.4e-07       2      65 ..      82     149 ..      81     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 7.2e-10
    TIGR02181   2 viYtkksCpycsrAkalL.eekgvefeeievdkdk....eareemierskgrrtvPQifigdvhvGGcd 65 
                  v++t+++ p++++A   L +e g++++++++d+       +r+e+   + g+++vP ++ig v vGG+d
  MMETSP1174-20130828|15979_1  82 VVFTWEKSPFSNKALVALsDEAGANVKNVRLDDPWdegnLLRAELGRLT-GQTSVPSVWIGGVYVGGFD 149
                  799***********8766156789*******975422324566776666.8*****************9 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-08   2.2e-05       4      97 ..      75     178 ..      72     180 .] 0.74

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.1e-08
    TIGR02189   4 lvsekavvifskssCCls.hvvkrLllelGvnPavveldkeaeakeieka.llelgskeavPvvfvGGklvGglee........vmalhlsgsLvpllkkagal 97 
                  l++  + v+f+ +   +s  ++  L  e G+n   v ld+  +  ++ +a l +l+++++vP v++GG +vGg++         ++ l   g+L  +l++agal
  MMETSP1174-20130828|15979_1  75 LTTSAPCVVFTWEKSPFSnKALVALSDEAGANVKNVRLDDPWDEGNLLRAeLGRLTGQTSVPSVWIGGVYVGGFDGgpsedapgILRLAFRGKLQSMLQEAGAL 178
                  666777888887665555155666777899999999999987777766661566*******************9732333344478888889999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 516.48
//
Query:       MMETSP1174-20130828|15982_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 233.81
//
Query:       MMETSP1174-20130828|15989_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1174-20130828|15990_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|15988_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.89
# Mc/sec: 231.35
//
Query:       MMETSP1174-20130828|15994_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.64
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|15995_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.49
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|15996_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   13.3   0.2       0.08   10.3   0.1    2.2  1  TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02433  lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   1.9e-05      0.08       3      45 ..      49      97 ..      47      99 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.9e-05
    TIGR02433  3 vRfrqeGDrikl.......lGrkgsKklKklfidakvPpwlRdriPLlfy 45
                  R r+ GDr+++       + ++g+ k+  ++ ++ vP + Rd + +l+ 
  MMETSP1174-20130828|15996_1 49 MRQREKGDRLTPvwplatsSSKRGT-KVVSILRQHEVPLERRDSALVLTL 97
                 5777777777754443332344455.45569*************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 573.03
//
Query:       MMETSP1174-20130828|16000_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 280.83
//
Query:       MMETSP1174-20130828|15999_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.62
# Mc/sec: 530.09
//
Query:       MMETSP1174-20130828|16003_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|16004_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1174-20130828|16006_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       426  (0.103852); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:01.02
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|16002_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 685.49
//
Query:       MMETSP1174-20130828|16007_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 453.16
//
Query:       MMETSP1174-20130828|16012_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|16010_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.68
# Mc/sec: 978.27
//
Query:       MMETSP1174-20130828|16016_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 451.22
//
Query:       MMETSP1174-20130828|16017_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 238.31
//
Query:       MMETSP1174-20130828|16020_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.63
# Mc/sec: 236.74
//
Query:       MMETSP1174-20130828|16021_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.5   4.0       0.12   10.3   2.8    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
       0.18    8.7   2.7        0.2    8.5   1.9    1.0  1  TIGR00092 TIGR00092: GTP-binding protein YchF
       0.59    6.1   6.0       0.59    6.1   4.2    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8   9.1e-05      0.12      97     140 ..       7      50 ..       2      63 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.1e-05
    TIGR02894  97 eeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieed 140
                   +a+k  +eke l++ele+l+  +e+Leke+++  + ++ + e 
  MMETSP1174-20130828|16021_1   7 ASASKHAEEKEDLNKELETLRAVKEQLEKEKQSHLEWTRGTIEK 50 
                  56677889999999999999999999999998755554444444 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   0.00015       0.2     146     194 ..       7      54 ..       2      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00015
    TIGR00092 146 ekvkkkakegkeakeelellekvleaLengkkvrklklneeelkiiksl 194
                  +  +k+a+e+++  +ele l +v e+Le+ k+  +l++++  ++++k l
  MMETSP1174-20130828|16021_1   7 ASASKHAEEKEDLNKELETLRAVKEQLEKEKQ-SHLEWTRGTIEKLKAL 54 
                  667899*********************98765.6888999999988875 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.2   0.00043      0.59     497     550 ..       4      57 ..       1      64 [. 0.69

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00043
    TIGR01069 497 eiiekAkeklgeekeeinkviekleekekele.ekaeelekllkeleklkkeleq 550
                   ++  A  k +eeke++nk +e l + + +le ek+++le  +  +eklk   ++
  MMETSP1174-20130828|16021_1   4 DLVASAS-KHAEEKEDLNKELETLRAVKEQLEkEKQSHLEWTRGTIEKLKALHKE 57 
                  5566664.45788999999999999988777614567889888888888754433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      221  (0.0538762); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 158.88
//
Query:       MMETSP1174-20130828|16019_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 560.37
//
Query:       MMETSP1174-20130828|16027_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 267.36
//
Query:       MMETSP1174-20130828|16026_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.50
# Mc/sec: 578.11
//
Query:       MMETSP1174-20130828|16032_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-16   57.8   0.7    3.9e-16   57.2   0.5    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.2e-09   32.6   0.7    8.9e-09   32.1   0.5    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    1.3e-06   26.4   0.2    1.4e-05   23.1   0.0    2.4  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.5   2.8e-19   3.9e-16       1      71 [.     222     298 ..     222     306 .] 0.82

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 2.8e-19
    TIGR02349   1 dYYeiLgvskd..AseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfghagle 71 
                  d Y ++gv+k+  Ase+ei+ AY+k   k+HPDr +      +++ae+kfk i +Ay vLsd+ +++ +Dq g ++ e
  MMETSP1174-20130828|16032_1 222 DIYALIGVEKKerASENEIRAAYKKACLKWHPDRFSSkskaeKANAETKFKAIGDAYSVLSDPLRKSLWDQ-GYDRQE 298
                  6799****995559*******************9654445557899************************9.444333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.5   6.5e-12   8.9e-09       3      73 ..     222     299 ..     219     304 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 6.5e-12
    TIGR03835   3 DyyevLgidrD..adeqeikkafrkLakkyhPDr....nka..adaakifaeineandvLsnPkkraryDkyGhDGvDr 73 
                  D y  +g+++   a e+ei+ a++k   k+hPDr     ka  a+a+  f+ i +a+ vLs+P ++  +D+ G+D  + 
  MMETSP1174-20130828|16032_1 222 DIYALIGVEKKerASENEIRAAYKKACLKWHPDRfsskSKAekANAETKFKAIGDAYSVLSDPLRKSLWDQ-GYDRQEI 299
                  788888887643499******************854444555699**********************9996.7776555 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.13   1.8e+02      97     136 ..      66     104 ..      55     107 .. 0.74
   2 !   23.1   0.0     1e-08   1.4e-05       6      54 ..     238     288 ..     234     290 .. 0.93

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.13
    TIGR00714  97 deaaleklkkkvkkeiqsllaalvealkeqdyaaAakyts 136
                    ++l+++ k+v +e  +++a +  alk +d + A ++++
  MMETSP1174-20130828|16032_1  66 VVKRLKHV-KRVMREAAQIKAGVEAALKANDISTALQLCN 104
                  44455444.5666777788899999999999999999886 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1e-08
    TIGR00714   6 kaLrkryrklQkqyHPD..vsksaqeqaaalqqStelNqAykTLkdplkRa 54 
                  + +r+ y+k   ++HPD   sks++e+a a  +   + +Ay+ L dpl+++
  MMETSP1174-20130828|16032_1 238 NEIRAAYKKACLKWHPDrfSSKSKAEKANAETKFKAIGDAYSVLSDPLRKS 288
                  678999************999***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.54
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|16034_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.64
# Mc/sec: 538.27
//
Query:       MMETSP1174-20130828|16033_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|16028_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.45    6.7   7.0       0.64    6.2   4.9    1.1  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
        6.2    2.8   8.7        7.7    2.5   6.0    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.9   0.00031      0.64      13     111 ..     319     416 ..     315     433 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00031
    TIGR03490  13 issisllsvvsCsttssnsk...qpekkpeakpeenkPkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqad 111
                  ++s+s++   sC   +   k   ++    e+k++ ++      +dn++      +++n+ +++++  ++ +  ++++ s+++ +++++++ + +    +qa 
  MMETSP1174-20130828|16028_1 319 NPSASFFDELSCDALDRGGKrfdSQTRLDEQKKNSETFGAVGLQDNRRSRGARGQRNNNAQNQQHSQQHGQQHSQQQHSQQHSQQHNQQRMNTN----SQAR 416
                  89************99999977756666778999999999999998877777777778888888888888888888888665544433333322....3322 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   6.0    0.0037       7.7     302     396 ..     314     427 ..     230     465 .. 0.45

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0037
    TIGR00934 302 ekikrrlstssiekns...................qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryak 396
                  ++ k  +s s  ++ s                   q++ + +      +d++  r  r + ++ a+++++++ + +++ q+ + ++++++++++++ ++++a++ + ++++y++
  MMETSP1174-20130828|16028_1 314 SSKKYNPSASFFDELScdaldrggkrfdsqtrldeQKKNSETFGAVGLQDNRRSRGARGQRNNNAQNQQHSQQHGQQHSQQQHSQQHSQQHNQQRMNTNSQARNGVSTQGQYNN 427
                  222222222222222244444444443221111111111122222222223333333333333344444444443333344443333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.63
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|16036_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|16038_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 813.48
//
Query:       MMETSP1174-20130828|16039_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 683.94
//
Query:       MMETSP1174-20130828|16040_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 404.77
//
Query:       MMETSP1174-20130828|16041_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   15.3   0.0     0.0078   14.4   0.0    1.4  1  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE


Domain annotation for each model (and alignments):
>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.9e-06    0.0078       9      70 ..     248     308 ..     241     324 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.9e-06
    TIGR02981   9 lvialplyaaeywidvrvpeqyqrehvqgainiplkevkerietvvpdkndtvklycnagrq 70 
                     a+p++  e +i  rv  +  +e  +    + l e  +ri ++v ++n  v ++cn g  
  MMETSP1174-20130828|16041_1 248 ATHAIPMFFPEKYIYFRVRLNDSEEEEEE-KLVQLFETVSRILAAVKQRNGVVYVHCNKGTS 308
                  56799*********999987776666554.458999**********************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1181.90
//
Query:       MMETSP1174-20130828|16035_1  [L=1213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.17s 00:00:00.88 Elapsed: 00:00:00.99
# Mc/sec: 1617.20
//
Query:       MMETSP1174-20130828|16047_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|16049_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 267.55
//
Query:       MMETSP1174-20130828|16050_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.61
# Mc/sec: 114.68
//
Query:       MMETSP1174-20130828|16051_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071   11.0  13.3      0.052   11.5   7.7    1.8  2  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
       0.11    9.7  10.0       0.14    9.4   6.9    1.1  1  TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.097     2e+02      56      69 ..       5      18 ..       1      36 [. 0.50
   2 ?   11.5   7.7   2.5e-05     0.052      28     114 ..      30     113 ..      19     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.097
    TIGR01837 56 evktkleqvrdkvq 69
                 e+++++++v+d +q
  MMETSP1174-20130828|16051_1  5 EIEQHMDRVKDAMQ 18
                 34444444444333 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.5e-05
    TIGR01837  28 fdeLVkeGekaekrakkrvdksvdalreevktkleqvrdkvqrnldklekafdervesvlnrLniPskeeveaLrakveqLkkqvee 114
                  fd L    e+a k+ k+++d+++   r++ k++ +q r + +++ld  ++  der +++++ L++ ++ee+ +L++++eq  ++v+ 
  MMETSP1174-20130828|16051_1  30 FDDLSD--EAAFKKLKRELDDNAALQRDKLKQRRKQKRANLVKKLDDEGASEDER-QDAMKELDLEEQEELADLETEIEQHSERVKG 113
                  566644..5667778888999999999********************99888888.899**********************999975 PP

>> TIGR02971  heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.9   6.6e-05      0.14     107     205 ..      11     121 ..       3     132 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.6e-05
    TIGR02971 107 nrleaele...taqrelerykslkkdga...vsesaldskklkleeaeeeleeakaslseqleeekaalasiaeevreld......vklvqaevksakeavkkaeallelt 205
                  +r++ +++   +a++e +++ +l+ + a   + ++  d+ +l++++++++ ++++a+l ++l++e a  ++ +++++eld      ++ +++e+++  e vk a +   l+
  MMETSP1174-20130828|16051_1  11 DRVKDAMQtpgKANTEEDKFDDLSDEAAfkkLKRELDDNAALQRDKLKQRRKQKRANLVKKLDDEGASEDERQDAMKELDleeqeeLADLETEIEQHSERVKGAMQAPALN 121
                  555555552226999999*******99954445556678899999************995555555555555555555440000005667888888888888887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 465.10
//
Query:       MMETSP1174-20130828|16053_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-26   89.8   0.0      5e-26   89.5   0.0    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.1e-25   88.1   0.0    1.6e-25   87.7   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.5e-24   83.4   0.0    4.4e-24   83.1   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    8.2e-24   82.4   0.0    9.8e-24   82.2   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.9e-21   72.6   0.0    7.4e-21   72.0   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    7.1e-18   63.0   0.0    8.6e-18   62.7   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      1e-17   62.3   0.0    1.3e-17   61.9   0.0    1.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.1e-16   58.8   0.1    1.3e-16   58.5   0.1    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    4.3e-15   53.6   0.5    5.1e-15   53.3   0.4    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.9e-09   33.8   0.1    7.2e-09   32.9   0.1    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   1.2e-28     5e-26      16     241 ..       4     237 ..       1     242 [. 0.88

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 1.2e-28
    TIGR01832  16 GlGqgiavglaeaGad.ivgvgiselsetqekvealGr..kflslkadladeeaakalvdeaveeag.kidilvnnaGiir.redavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaailer...iPagrwGepedlagaavflassasdyvnGailav 241
                   lG  ++ +la aGa  iv++g +      +++++  r   ++ ++ad+ d++a ++lvd+a+e +g  +  +   aG+   r+  +  + + w  +++vn++a +ll+q++a+ + + G +g i+ + s+ s+ G   ++ y+ sk a+  ltk+ a+e+ +  i+vn +  G   ++n ++ +a e+ ++ + +     P gr  +ped+a ++ +l s++s  v+G  + +
  MMETSP1174-20130828|16053_1   4 SLGACVVRTLAGAGASgIVCTGSRPSPAFVQEMNEDYRdcAISYIQADMGDPAACASLVDKAAEGFGgALYGVACCAGVAFpRATLETTTLESWSRMMDVNVRAPMLLTQHAARVMRQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTLSANEAKEQAKEQGDDWLSKTealSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDI 237
                  58999*********965999998777777777777666225678********************99868999999***975277777777899**********************************************************************************9999999888888777655432222699**************************98865 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   3.9e-28   1.6e-25      13     249 ..       5     238 ..       2     243 .. 0.87

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 3.9e-28
    TIGR01963  13 iglaiakelaaaGak.vvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvn.nAGiqhv.apieefptekfekiiavnltsafhtiraalpimkkqgw.GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsld 249
                  +g+ + ++la aGa+ +v ++ +   a  ++++   +   + +++ad+ + +++a+l++++a+ fg++   v   AG+ +  a +e    e+++++++vn+ +++ ++++a + m+++g  G i++++s+ ++ + +f s+Y  +K +l  ltKv+A E  +  i++n+++ g     L ++  ++qak++g    + +++   + +p +r++ +e++a ++  l+sd++  +tG+ + ++
  MMETSP1174-20130828|16053_1   5 LGACVVRTLAGAGASgIVCTGSRPSPAFVQEMNEDYRDCAISYIQADMGDPAACASLVDKAAEGFGGALYGVAcCAGVAFPrATLETTTLESWSRMMDVNVRAPMLLTQHAARVMRQAGIqGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIG---QTLSANEAKEQAKEQGD---DWLSKT-EALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDIS 238
                  67888999*****975777888877777777777777788899**********************99877665279**9862679********************************99549************************************************977...569999********983...333332.245899***************************99886 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.1e-26   4.4e-24      41     245 ..      33     235 ..       2     240 .. 0.80

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.1e-26
    TIGR02415  41 akelkek..gtkavavkldvsdkseveeaveqaveklGe.ldvlvnnaGvalvt.pileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseik.lGresePedvaelvsflasedsdyitGqsi 245
                  ++e++e+  +    ++++d+ d ++  ++v++a+e +G+ l  +   aGva+   ++++ t e+ +++ +vnv + +   q aa+ +++ + +G i+   sia+  g p  s ys +k a+ +lt++aa eL ++ i vn+ + G  +t     + +++a+++ ke g+++ + ++++  +Gr  +Ped+a  +  l s+ s  +tG  i
  MMETSP1174-20130828|16053_1  33 VQEMNEDyrDCAISYIQADMGDPAACASLVDKAAEGFGGaLYGVACCAGVAFPRaTLETTTLESWSRMMDVNVRAPMLLTQHAARVMRQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIG--QT-----LSANEAKEQAKEQGDDWLSKTEALSpIGRLLRPEDIAPTMGLLMSDSSTMVTGSLI 235
                  444544311344456799*******************8636677789****87615777889******************************************************************************98866..44.....455566666666666666666665437**************************765 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   2.4e-26   9.8e-24       9     234 ..       4     237 ..       1     241 [. 0.83

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 2.4e-26
    TIGR01830   9 giGkaiakklakegakvvitersk..eekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrm.keedwdevikvnLkgvfnvtkavlkkmikkr.sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfiet.dmteklsekvkkkileqi....plkrlgkpeevaaavafLasdeasyitGqvlkv 234
                  ++G+ ++++la +ga+ ++++ s+   + ++e++e+ ++     + +++d+ d +++ +lv+++ e +g  +  + + AG++  +  l+  + e w+++++vn+++   +t+++++ m ++  +G+i+ ++s++++ G +  + Y+ sK+ l +ltk  a El +  i+vn++  G   + +  ++  +++ +++l++     p++rl +pe++a ++  L sd+++ +tG+ + +
  MMETSP1174-20130828|16053_1   4 SLGACVVRTLAGAGASGIVCTGSRpsPAFVQEMNEDYRDC--AISYIQADMGDPAACASLVDKAAEGFGgALYGVACCAGVAFPRATLETtTLESWSRMMDVNVRAPMLLTQHAARVMRQAGiQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTLSaNEAKEQAKEQGDDWLSKTealsPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDI 237
                  58999*********99777755440144556666666664..678899*******************98345567789****9888776515799***********************998769***************************************************97544144555555555555554333339*****************************998 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.8e-23   7.4e-21     425     666 ..       4     237 ..       1     243 [. 0.84

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 1.8e-23
    TIGR02632 425 GiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpleete.leeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitv 666
                   +G  v r l++ Ga  ++    +    a  +e+++ + + +   +++d+ d  a ++ ++++a  +GG +  v+  aG+a  + + et+ le+W++ +d++++   l++++aar++r+ g+ g++v+++s  +    +  + ys +k a + l ++ a el    irvn ++    l      a+e +e+ a + g   d l++  +  s ++r + pedia ++ ll+sd+++  tG +i +
  MMETSP1174-20130828|16053_1   4 SLGACVVRTLAGAGASGIVCT-GSRPSPAFVQEMNEDYRDCAISYIQADMGDPAACASLVDKAAEGFGGaLYGVACCAGVAFPRATLETTtLESWSRMMDVNVRAPMLLTQHAARVMRQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTL-----SANEAKEQ-AKEQG--DDWLSK-TEALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDI 237
                  678899999999999854443.34456678899999999999999***********************94567999****99876555544************************************************************************999*****9965444.....44444333.22222..344444.45668899999**********************99976 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   2.1e-20   8.6e-18      10     236 ..       3     237 ..       1     241 [. 0.86

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 2.1e-20
    TIGR01829  10 gGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelG.pvdvlvnnaGitr.davfkkmtkeqWeevidtnlnsvfnvtrpviegmlergf.GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiat.....emvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsv 236
                  g +G+ + + la +G   +  + +  + a   + +++ ++  +  ++ad+ +  ++++ v+k  +  G  +  +  +aG++   a+++  t e+W+ ++d+n+ + + +t+     m++ g  G i+ + s+    G    + ys +k  l  +tk  a e  +  + vn +  G +       e  k   +d l+k  a  P++rl +pe+ia ++  l s++++ vtG+ +++
  MMETSP1174-20130828|16053_1   3 GSLGACVVRTLAGAGASGIVCTGSRPSPAFVQEMNEDYRDCAISYIQADMGDPAACASLVDKAAEGFGgALYGVACCAGVAFpRATLETTTLESWSRMMDVNVRAPMLLTQHAARVMRQAGIqGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTLSaneakEQAKEQGDDWLSKTEALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDI 237
                  67899999999999987665555455555555556678899999******************999986256677889***86257999*******************************99659************************************************99987541111134445557899999*********************************9987 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   3.3e-20   1.3e-17      71     259 ..      49     236 ..      34     241 .. 0.90

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 3.3e-20
    TIGR03971  71 kadvrkleelravveegveefG.rldvvvanaGvlsygrafelse.eqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqla 259
                  +ad+ + ++  + v+++ e fG  l  v   aGv+   ++ e +  e W  ++dvn++      + +  ++ +++  Gsi+ v+s a+  + p+ + y+++k  l +ltk  a el    irvn ++   +  ++ ++ea  ++  + ++ + +  +  p+  l+ ped+a  +  l sd s ++tG+ + 
  MMETSP1174-20130828|16053_1  49 QADMGDPAACASLVDKAAEGFGgALYGVACCAGVAFPRATLETTTlESWSRMMDVNVRAPMLLTQHAARVMRQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLN---IGQTLSANEAKEQAKEQGDDWLSKTEALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLID 236
                  57777778888899999999963577788899*99888888875449**************9999999********************************************************986...6677888999999999******999999*****************************9775 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   3.1e-19   1.3e-16      46     235 ..      41     238 ..       3     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 3.1e-19
    TIGR01831  46 qggnarllkfdvadrvavrevleadiaeh.gayygvvlnagiard.aafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapg..lidtemvaevekd....lkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvn 235
                  +  + + ++ d+ d  a+ +++++  +   ga ygv  +ag+a   a++ + + e w  +++ n+ +   + +     m +a   g i+ + s++   g      ys +k  l   tk  a el   +i vnc+  g  l   e  ++ +++    l+++  l p+ r+ ++e++a  ++ lmsd+++ vt  +i + 
  MMETSP1174-20130828|16053_1  41 RDCAISYIQADMGDPAACASLVDKAAEGFgGALYGVACCAGVAFPrATLETTTLESWSRMMDVNVRAPMLLTQHAARVMRQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGqtLSANEAKEQAKEQgddwLSKTEALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDIS 238
                  4566788999***********99998875279**********976155788899*******************************************************************************9887324444444444333112255555678***************************9999886 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.4   1.2e-17   5.1e-15      13     245 ..       3     238 ..       1     242 [. 0.78

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 1.2e-17
    TIGR03206  13 ggiggaicrrfaeegakvavldlnaeaaekvaaairekggka.eavavditdrasvdaavaaaeealgpvdvlv.nnagwdvlkpflkt.ekaewerliainltgalymhhavlkgmve.rkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvs 245
                  g +g+++ r +a  ga   v   ++ +   v +   +    a   +++d+ d a+    v  a e++g +   v   ag    ++ l+t     w r++ +n+   + +    ++ m +   +g iv + s a+ +g+   + y++ kg l a++k  a el  + i vn +  g t +a      +  e+++  +       p+grl +p+d+a ++ +l sd ++++tg ++ +s
  MMETSP1174-20130828|16053_1   3 GSLGACVVRTLAGAGASGIVCTGSRPSPAFVQEMNEDYRDCAiSYIQADMGDPAACASLVDKAAEGFGGALYGVaCCAGVAFPRATLETtTLESWSRMMDVNVRAPMLLTQHAARVMRQaGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTLSANE-AKEQAKEQGDDWLSKTEALSPIGRLLRPEDIAPTMGLLMSDSSTMVTGSLIDIS 238
                  6677777777777777777777777766666655555444331568999999999999999999999877665515688887777666515688*********99876655556666551569***********************************************999998877743.33444556666666655566*****************************99987 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.8e-11   7.2e-09     120     258 ..      98     237 ..      26     243 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.8e-11
    TIGR02685 120 aelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampe...evkeeyrrkv....plgqreasaeqiadvviflvskkakyitGtiikv 258
                  + ++  n  ap+ll++  a+ +      + + + siv +         +  s y+++k al+ lt+ aa el + +irvn++  G +l  ++  e   e+ +++  k     p+g+     e+ia  + +l+s+++  +tG++i +
  MMETSP1174-20130828|16053_1  98 SRMMDVNVRAPMLLTQHAARVM-----RQAGIQGSIVYVGSIASYGGAPFISPYSVSKGALNALTKVAASELQADRIRVNCLNIGQTLSANEAKEqakEQGDDWLSKTealsPIGR-LLRPEDIAPTMGLLMSDSSTMVTGSLIDI 237
                  4577889999*99998766554.....44455567776655555555555689********************************9998776655111555789988633335554.56789********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 851.33
//
Query:       MMETSP1174-20130828|16052_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.9   0.0      0.048   11.7   0.0    1.6  1  TIGR02598 TIGR02598: Verrucomicrobium spinosum paralogous family TIGR02598


Domain annotation for each model (and alignments):
>> TIGR02598  TIGR02598: Verrucomicrobium spinosum paralogous family TIGR02598
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05     0.048      15      41 ..      97     123 ..      83     149 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
    TIGR02598  15 atalltLiaLlPtglDtlRdssnkqAe 41 
                  + +l tLi+L+P   D+lR+ +++ A+
  MMETSP1174-20130828|16052_1  97 TSTLSTLISLVPLCSDQLRKMAKTGAK 123
                  346779****************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1601.24
//
Query:       MMETSP1174-20130828|16056_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 148.84
//
Query:       MMETSP1174-20130828|16059_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.5   0.1      0.032   11.5   0.1    1.0  1  TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein


Domain annotation for each model (and alignments):
>> TIGR01729  taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.7e-06     0.032     208     251 ..       9      52 ..       3      55 .] 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.7e-06
    TIGR01729 208 dayaeylanpdawkadspqvsklakliGakaeevpellkglsfp 251
                  + ++ey  +    k++  q +kl + +G+++e+  + lk + f 
  MMETSP1174-20130828|16059_1   9 AGQQEYEQRQHQLKQQQHQYQKLLQQSGVHKEQHDQQLKQQQFQ 52 
                  6799***********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       536  (0.130668); expected 82.0 (0.02)
Passed bias filter:                      282  (0.068747); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 177.06
//
Query:       MMETSP1174-20130828|16061_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|16062_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|16063_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   14.1   0.0     0.0061   13.8   0.0    1.1  1  TIGR01933 hflK: HflK protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.5e-06    0.0061       1     136 [.      26     162 ..      26     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-06
    TIGR01933   1 iyiikeaergvvlrfGkys.rvlepGlnlkipfieevykvnvekvrelakeglmltkDeni.vevelnvqYkisdpakyl..fkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGit 136
                  i+i+ +a  g+v+++G+ + + l +G+++  p+   v+    ++  + ++++  + + +n+ ++v l     i   ++    + v++++  +r    sa+r +  ++s + + t gR  ++++  eel++  ++   Gi 
  MMETSP1174-20130828|16063_1  26 IRIVPPAHVGIVVTLGNVRgEPLPAGFHVVNPLSSVVLFTTKTQLMDSENNVPTV-EGLNVeLDVALLFSLNIDKVKDLFltLGVDYENVLIRTELASAVRGLTSEKSAKALYTAGRRDLQTNLLEELQAKFEPR--GII 162
                  68999************97468999****99998877777666666655555554.456765899999999999888754126899******************************************9987753..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:01.03
# Mc/sec: 246.04
//
Query:       MMETSP1174-20130828|16068_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.56
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|16073_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 642.35
//
Query:       MMETSP1174-20130828|16081_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 196.10
//
Query:       MMETSP1174-20130828|16078_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-17   61.0   0.1      4e-17   60.5   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.3e-10   36.4   0.6    5.2e-10   36.2   0.4    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.9e-20     4e-17      26     101 ..       1     104 [.       1     116 [. 0.66

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.9e-20
    TIGR02349  26 kkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea............................sefgdigdifeeffg 101
                  +kyHPD+n+g+++a++ fk+i+eAye Lsd ekra+YD+fg++g      ++++++ +                                ++++  d+f+++fg
  MMETSP1174-20130828|16078_1   1 MKYHPDKNPGDNAASDFFKKISEAYECLSDAEKRAAYDRFGKEGDAFRVPEQQNENGMAGFpngfpseftagrgggvrmhfsssgdgggMDIDRARDLFGSIFG 104
                  79****************************************99776544422222221113344444444444444444444444433333345555555555 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.4   2.5e-13   5.2e-10      29      70 ..       2      44 ..       1      69 [. 0.89

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.5e-13
    TIGR03835 29 kyhPDrnkaadaa.kifaeineandvLsnPkkraryDkyGhDG 70
                 kyhPD+n   +aa + f+ i ea++ Ls+ +kra yD++G +G
  MMETSP1174-20130828|16078_1  2 KYHPDKNPGDNAAsDFFKKISEAYECLSDAEKRAAYDRFGKEG 44
                 9******9966551699***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1036.11
//
Query:       MMETSP1174-20130828|16080_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1303.39
//
Query:       MMETSP1174-20130828|16084_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1174-20130828|16092_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   40.2   0.0    3.3e-09   34.2   0.0    2.5  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.3   1.2e+03      14      23 ..      18      27 ..      17      33 .. 0.75
   2 !   34.2   0.0     8e-13   3.3e-09       2      35 .]      40      73 ..      39      73 .. 0.96
   3 !    3.5   0.0    0.0047        19       2      17 ..      75      90 .]      74      90 .] 0.91

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.3
    TIGR00756 14 grveeAlelf 23
                 g+++ Al ++
  MMETSP1174-20130828|16092_1 18 GDWRGALNFL 27
                 8999998765 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 8e-13
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                 +y+++i  +++a+r+e+Al+l+ +M+ rg++Pd+
  MMETSP1174-20130828|16092_1 40 VYTAVIGVCGRAKRWEDALQLLVRMEGRGLRPDV 73
                 8*******************************96 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0047
    TIGR00756  2 tyntlisglckagrve 17
                 ++++ is+++ a+++e
  MMETSP1174-20130828|16092_1 75 SFSAAISACGGARQWE 90
                 7999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|16094_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-12   44.9   0.0    2.3e-12   44.8   0.0    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.7e-16   2.3e-12     243     337 ..       3      99 ..       1     100 [] 0.95

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 5.7e-16
    TIGR02349 243 nggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPk 337
                   g ++Gd++++++   h+ f r+ ndl++ ++i + +a +g + +++ ++g +++++ ++ t  gev +l+g+G++ + s  + Gdl+++++v +P+
  MMETSP1174-20130828|16094_1   3 VGFQTGDVILHIRSIRHEFFVRKKNDLHMGMNIPLRDALIGFSTQIEHVDGrHIDITRHEVTSCGEVHVLRGEGMPIRMSPgNFGDLHITFTVVFPS 99 
                  56789**********************************************999**********************99988799*********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|16090_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-44  145.6   1.6    7.7e-44  145.3   1.1    1.1  1  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]
    9.2e-16   55.4   0.3    1.2e-15   55.0   0.2    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    2.5e-06   25.5   0.7    3.3e-06   25.1   0.5    1.2  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
    0.00025   17.9   0.0    0.00028   17.7   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   1.1   7.5e-47   7.7e-44       2      97 .]      45     139 .]      44     139 .] 0.98

  Alignments for each domain:
  == domain 1    score: 145.3 bits;  conditional E-value: 7.5e-47
    TIGR02008   2 sykvklvnedgseetievpddeyildaaeeeGidlpyscraGacstcaGkvkeGtvdqsdqsfldddqleegyvltcvayptsdvkiethkeeell 97 
                  ++kv+l +++g +  ie+  d yild+aee+ i+lpyscraGacstcaGkv++G+vd+s+qsfl+ddql+eg+ ltcvay +sd++iethke++l+
  MMETSP1174-20130828|16090_1  45 NFKVTLKDPAG-DFDIECAPDVYILDVAEENDIELPYSCRAGACSTCAGKVVSGEVDNSEQSFLEDDQLAEGFTLTCVAYAASDCVIETHKEDDLF 139
                  59*******99.99********************************************************************************95 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.2   1.2e-18   1.2e-15     278     348 ..      60     130 ..      36     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.2e-18
    TIGR02160 278 lsaedesvldaalraradlPfackgGvcgtcrakvleGkvemeknyalepdevdaGyvltcqarPlsdklv 348
                    a d  +ld+a  +  +lP++c++G c+tc  kv+ G+v+  +   le d+++ G+ ltc a+  sd ++
  MMETSP1174-20130828|16090_1  60 ECAPDVYILDVAEENDIELPYSCRAGACSTCAGKVVSGEVDNSEQSFLEDDQLAEGFTLTCVAYAASDCVI 130
                  4567889*********************************************************9998765 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.5   3.2e-09   3.3e-06      18      90 ..      59     130 ..      48     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.2e-09
    TIGR02007  18 veakeGetildvalkaeieiehacekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavv 90 
                  +e+++   ildva +++ie+  +c  + ac+tc   v  G    +e+s  e+d l + + l   +  + ++v+
  MMETSP1174-20130828|16090_1  59 IECAPDVYILDVAEENDIELPYSCR-AGACSTCAGKVVSGEVDNSEQSFLEDDQLAEGFTLTCVAYAASDCVI 130
                  899999******************6.68***************************999988776665555554 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-07   0.00028      31     121 ..      45     133 ..      12     137 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.8e-07
    TIGR01941  31 dvtikindde.eksltveaGdkllntlaskgifissacGGggscgqcrvrvvegggeilptekshiskreakegwrlscqvkvkedlelele 121
                  + ++++ d + +  ++ +    +l++ ++++i ++ +c   g+c+ c  +vv+g  e+ ++e+s++   ++ eg+ l+c +   +d  +e +
  MMETSP1174-20130828|16090_1  45 NFKVTLKDPAgDFDIECAPDVYILDVAEENDIELPYSCRA-GACSTCAGKVVSG--EVDNSEQSFLEDDQLAEGFTLTCVAYAASDCVIETH 133
                  4555555533244566666667899999**********86.67********985..77799******************9999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|16097_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.53
# Mc/sec: 266.47
//
Query:       MMETSP1174-20130828|16101_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 332.10
//
Query:       MMETSP1174-20130828|16102_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|16104_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1174-20130828|16107_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 795.60
//
Query:       MMETSP1174-20130828|16106_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 1086.55
//
Query:       MMETSP1174-20130828|16111_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 124.23
//
Query:       MMETSP1174-20130828|16114_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.37
# Mc/sec: 189.07
//
Query:       MMETSP1174-20130828|16120_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1174-20130828|16122_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|16125_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   18.9   0.0      8e-05   18.9   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.9e-08     8e-05     761     796 ..      26      64 ..       3      65 .] 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-08
    TIGR01970 761 qGrvkltleLLsPaqrPlqvtkDLasfW...kgaykevk 796
                   Grv++tleLL P  r  + t DLa+fW   kg yk v+
  MMETSP1174-20130828|16125_1  26 GGRVRVTLELLGPNGRLAARTSDLAGFWckdKGGYKAVR 64 
                  69**************************77778888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:01.20
# Mc/sec: 71.49
//
Query:       MMETSP1174-20130828|16121_1  [L=939]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.93
# Mc/sec: 1332.66
//
Query:       MMETSP1174-20130828|16129_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|16127_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-09   33.7   0.2      8e-09   32.8   0.1    1.4  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.1e-09   33.2   0.0    8.2e-09   32.9   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0067   13.9   0.0     0.0086   13.5   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   5.9e-12     8e-09     225     301 ..     101     174 ..      85     217 .. 0.71

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 5.9e-12
    TIGR01622 225 GnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvte 301
                   nl+++  E ++ ++F   Gei +v++++D+e+ r+k + F++F d    ++Al  + G  l GR+++v+ a+   +
  MMETSP1174-20130828|16127_1 101 SNLKYECDERDITEVFTRCGEITDVRVNRDKEG-RAK-FAFVTFPDIAGLQAAL-DMTGSTLCGRTVRVAVAQQRNQ 174
                  567777777777777777777777777777776.766.7777777777666555.5777777777777777665433 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     6e-12   8.2e-09     291     377 ..     101     184 ..      97     255 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 6e-12
    TIGR01628 291 kNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmq 377
                   Nl  + d+ ++ e+F ++Geit ++v +d+++++k F FV+f +     +A  ++ g  l g+ + va+Aq+++q   + ++++ +
  MMETSP1174-20130828|16127_1 101 SNLKYECDERDITEVFTRCGEITDVRVNRDKEGRAK-FAFVTFPDIAG-LQAALDMTGSTLCGRTVRVAVAQQRNQGA-KFRERRAK 184
                  69999**************************99998.******98765.566668*******************9964.44555544 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.3e-06    0.0086     275     348 ..     101     172 ..      68     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.3e-06
    TIGR01661 275 ynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                   nl  + de  +  +f++ G +++v++ rd +  +   ++fv+  +     +a l + G tl++r+++v++  ++
  MMETSP1174-20130828|16127_1 101 SNLKYECDERDItEVFTRCGEITDVRVNRDKE-GRA-KFAFVTFPDIAGL-QAALDMTGSTLCGRTVRVAVAQQR 172
                  68889999876559****************94.444.5******998765.5566799**********9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1161.50
//
Query:       MMETSP1174-20130828|16130_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 797.01
//
Query:       MMETSP1174-20130828|16131_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.7   0.2      0.089   10.6   0.0    1.9  2  TIGR02338 gimC_beta: prefoldin, beta subunit


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.2e-05     0.089       2      41 ..     101     140 ..     100     148 .. 0.95
   2 ?   -0.3   0.0     0.054   2.2e+02      50      66 ..     168     184 ..     143     189 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
    TIGR02338   2 ppevqeqlaqlqqlqqqlqavltqkqqveaelkevekaLe 41 
                  pp++ + ++q+ +lq ++++  ++  ++e +lk+  k Le
  MMETSP1174-20130828|16131_1 101 PPSMSHIVSQISDLQSNAERCQARMTRLENHLKDNTKGLE 140
                  89999*****************************999987 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.054
    TIGR02338  50 tkvYksvGnllvktdke 66 
                    +Yk+v +l++ ++k 
  MMETSP1174-20130828|16131_1 168 DSLYKEVWTLVYPVAKM 184
                  46899999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 696.61
//
Query:       MMETSP1174-20130828|16132_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|16128_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.69
# Mc/sec: 1340.93
//
Query:       MMETSP1174-20130828|16135_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|16137_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 179.51
//
Query:       MMETSP1174-20130828|16138_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|16142_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.5   0.0    2.5e-06   25.2   0.0    1.2  1  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     6e-10   2.5e-06       2      33 ..       4      35 ..       3      37 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6e-10
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivP 33
                 ++++ is++ k+g++e+A el++eM+ +g+  
  MMETSP1174-20130828|16142_1  4 SFSATISACEKSGQWEKAAELLEEMRQSGLPL 35
                 777779***********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 231.98
//
Query:       MMETSP1174-20130828|16145_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 675.18
//
Query:       MMETSP1174-20130828|16147_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 496.90
//
Query:       MMETSP1174-20130828|16144_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-82  275.7   3.0    1.6e-82  275.5   2.1    1.0  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
    2.7e-28   96.6   4.7    6.7e-28   95.3   3.3    1.5  1  TIGR00831 a_cpa1: Na+/H+ antiporter
  ------ inclusion threshold ------
        1.7    4.5   8.6        2.3    4.1   5.9    1.1  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.5   2.1   1.2e-85   1.6e-82     130     438 ..      25     338 ..       2     385 .. 0.89

  Alignments for each domain:
  == domain 1    score: 275.5 bits;  conditional E-value: 1.2e-85
    TIGR00840 130 glldallfgslisAvDPvavLavFe..evkvnekLyiliFGEsLlNDavtvvlyevlekfvkl.adeavtivdvvegivsffvvalggllvGvvvgflvalilkftkhir..viepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvseneewnw..afvvltlvfcviyRvlgvvtlsailnkfrkvkleikdqlvifyaGlRGAvafaLallldekkveekklfvttvlvvvfltvilqGltikplvevLkvkkkekskekln..eelhlrlldh 438
                  + l+allfg+lisAvDPva L++    e++ ++ Ly l+FGEs+lNDav++vl++v+ ++ +  a+ + t  +v  ++v f+ v++g+++vGv++g+l +++ k+t++      e  l++l++Y sY lae + lSgi+al +cgi l +Y  +N+s +s++t++ +++ ++ +sEt++F+++G+ l++  +   w  +f+ l+++ c ++Rv  ++ +s + n  r vk++++ q+vi +aGlRGA+afaL++ +++   ++k+++ tt+l vv++t ++ G  ++p+++++ +k+++  +ek++  e+++   l+ 
  MMETSP1174-20130828|16144_1  25 NSLEALLFGTLISAVDPVATLSIMGspELNCDPLLYSLVFGESVLNDAVAIVLFRVFFQYYNEpATGSSTPYQVPYAVVEFVGVSFGSVIVGVIIGLLCSFLFKNTNISDypSFEIALLFLFAYGSYALAEAVELSGIMALFFCGIALAHYNSYNLSDTSQITAEVLFHSMAGVSETFVFLYMGMGLFTG-HFNGWspVFIGLSIMSCLLARVFNTFPISFFANFTRRVKIPMRMQFVIWFAGLRGAIAFALSQNMPG---DHKDVYETTTLGVVIFTTVICGGMTEPMLRTMGMKRSDDGDEKVEweENITSGNLES 338
                  5699*******************964489999**************************99995336666777799999****************************99987789**************************************************************************99.5545555************************************************************...99**************99999999************999888775215555555554 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   3.3   4.9e-31   6.7e-28     106     408 ..      26     314 ..       4     346 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 4.9e-31
    TIGR00831 106 laaalvlgavlsptDavavaglvkeirl..PkkllivleGesllnDgaalvvlavavav....alGkav.fdpaaavveFvvvavGGilaGlvvgyLvtrllrak..iDepleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvqlpgiiesalkeaev..apaaeilalavtavviyaalayvrfltvlkktsnrvlkkktrevGtreklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavviLfsllvqgvsLpilvkrke 408
                  +  al++g ++s+ D+va ++++++  l     l  ++ Ges+lnD+ a+v+++v  +     a G++  +++  avveFv v  G +++G+++g L   l +     D p  eiall+l ++ ++ lae +++sG++a    g+ l+++     +s +s + a+ ++  +  +  + vf+++G+ l    ++ +    +   +   +la++ +++ i     +  f       + r       ++ +r + v+ +aGlRGai+ a+   +p   ++             + +v++f+ ++ g + + +++ + 
  MMETSP1174-20130828|16144_1  26 SLEALLFGTLISAVDPVATLSIMGSPELncDPLLYSLVFGESVLNDAVAIVLFRVFFQYynepATGSSTpYQVPYAVVEFVGVSFGSVIVGVIIGLLCSFLFKNTniSDYPSFEIALLFLFAYGSYALAEAVELSGIMALFFCGIALAHYNSY-NLSDTSQITAEVLFHSMAGVSETFVFLYMGMGLFTGHFNGWSPVFIglSIMSCLLARVFNTFPIS---FFANF-------TRR------VKIPMRMQFVIWFAGLRGAIAFALSQNMPGDHKDVYETT--------TLGVVIFTTVICGGMTEPMLRTMG 314
                  6789********************877621456889******************998652222556543388899**********************9987765322599****************************************987.9***********999999***************99999999875441155556666644444333...33333.......222......34567999************9988877777666644443........334555555554445555555544 PP

>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.9    0.0017       2.3     122     283 ..      18     178 ..       6     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0017
    TIGR00844 122 wilvpglnfsaslllsacitatdpvlaqsvvsgkfaqkvpghlrnllsaesgcndglafpfvflsldlllypgrggeivkdw.icvtilyeclfgs.llgciigyvgrkairfaekkriidresf.lafylilaltcagfgsllgvddllvsfaagaafawdgwf 283
                  wi +   n   +ll+++ i+a dpv + s++ g    +    l  l+  es  nd +a+ +  + ++    p  g     +    v  +    fgs ++g iig          ++ +i d  sf +a+  ++a+    +   + +  ++  f+ g a+a    +
  MMETSP1174-20130828|16144_1  18 WIDIDRENSLEALLFGTLISAVDPVATLSIM-GSPELNCDPLLYSLVFGESVLNDAVAIVLFRVFFQYYNEPATGSSTPYQVpYAVVEFVGVSFGSvIVGVIIGLLCSFL---FKNTNISDYPSFeIALLFLFAYGSYALAEAVELSGIMALFFCGIALAHYNSY 178
                  899999999999*************999986.6666777789*****************99999999********98866541455556677799835799999876543...4567999****96788888899999999999999999999999999865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|16149_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   95.2   0.0    5.3e-10   36.7   0.0    3.0  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.8e-10   2.4e-06       1      35 []       2      36 ..       2      36 .. 0.96
   2 !   30.3   0.0   1.5e-11   5.9e-08       1      35 []      37      71 ..      37      71 .. 0.96
   3 !   36.7   0.0   1.3e-13   5.3e-10       1      35 []      72     106 ..      72     106 .. 0.97

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.8e-10
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 v++n+ is++ k  ++e Al+l++eM +r ++Pd+
  MMETSP1174-20130828|16149_1  2 VAFNAAISACEKGAQWERALQLLEEMPRRRVEPDV 36
                 689******************************96 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.5e-11
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++++ is++ k  ++e+Al+l+d+M+ rg++P++
  MMETSP1174-20130828|16149_1 37 ISFSAAISACEKCEQWEKALQLLDDMRQRGVEPNV 71
                 58999****************************96 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 1.3e-13
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  v+y++ is+++k +++e Al+l++eM+ +g++P++
  MMETSP1174-20130828|16149_1  72 VSYSAAISACAKGRQWERALQLLEEMRHQGVEPNV 106
                  79*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 564.91
//
Query:       MMETSP1174-20130828|16153_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|16155_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.011   12.4   0.0    1.0  1  TIGR02351 thiH: thiazole biosynthesis protein ThiH


Domain annotation for each model (and alignments):
>> TIGR02351  thiH: thiazole biosynthesis protein ThiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-06     0.011      25      71 ..      17      62 ..       2      67 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-06
    TIGR02351 25 DveralakkklsledllaLlspaaeeyleelakkakkltrkrfGnti 71
                   ++ l + ++s++  ++Llsp+ae+++e la++ ++ +++r+ + +
  MMETSP1174-20130828|16155_1 17 KLREHLPHFSKSVN-GKNLLSPKAEKWMEPLANQETNRSEHRYTAML 62
                 34445555555555.489*****************999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|16160_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|16157_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.70
# Mc/sec: 590.18
//
Query:       MMETSP1174-20130828|16159_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 886.70
//
Query:       MMETSP1174-20130828|16161_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 511.96
//
Query:       MMETSP1174-20130828|16164_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   44.6   0.0    2.8e-12   44.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   6.9e-16   2.8e-12      53     160 ..       3     108 ..       1     109 [] 0.95

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 6.9e-16
    TIGR00231  53 ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfk 160
                   kvn++D  G+ d+ +ir+  ++++e++l v+d++   ++++e   +  ke +     + +p+ + +nK+Dl  ++++ ++   a+ ++ +++e+sa +g+n+ ++f+
  MMETSP1174-20130828|16164_1   3 LKVNFWDASGHPDYLEIRNEFYKDTEGLLLVYDVTDS-NSFDELD-DRMKEARTFGVRSTIPVAVCANKVDLSREVSEPEGLSWANGKGYRYFETSAAAGANVNEVFE 108
                  58***********************************.****999.8888888888889********************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 513.81
//
Query:       MMETSP1174-20130828|16166_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|16167_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1277.89
//
Query:       MMETSP1174-20130828|16176_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|16179_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|16178_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   62.0   0.0    1.9e-17   61.5   0.0    1.1  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
    5.4e-09   33.2   0.0    9.5e-09   32.4   0.0    1.4  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      4e-05   21.2   0.0       0.12    9.7   0.0    2.2  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0035   14.0   0.0     0.0051   13.5   0.0    1.1  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
     0.0063   13.2   0.0      0.012   12.2   0.0    1.5  2  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.022   12.3   0.0    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      0.019   12.3   0.1      0.035   11.4   0.1    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      0.022   11.6   0.0      0.032   11.1   0.0    1.2  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      0.023   11.4   0.0      0.073    9.8   0.0    1.8  1  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
      0.029   11.3   0.0      0.044   10.7   0.0    1.2  1  TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase
      0.029   11.5   0.2      0.059   10.5   0.1    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   5.2e-20   1.9e-17       3     247 ..      17     269 ..      15     276 .. 0.76

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 5.2e-20
    TIGR03649   3 LllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdw.......ldedtyenvfssddemekeelisavylvappvldlasllikFidvavkkgvkrfvllsasaiekGgpa.......lgkvhaylkel.eeveyavLRptWfmenfeeelhveaikeenklysAtsdgkiPfvsaeDiArvAvkaLtdksak...nteylvlGpeLltYddvAeiLsevlgRkitHvklseeelakrlqeaGvseeearlla 247
                  ++ g +G+v++ + ++la+ +   + a  +ss++ + ++ + +Fd+        d+ + ++vf      e      + +l +++   ++++ ++Fid+av+ gvk +v l +    +  ++        +++ ++l++  ++++++vL p Wfm n   ++   ++ +    y+   ++    +   D+   A++ L + +++      + v Gpe ++  +vA++ +e lgR i+ v+ s e+ + + + +G++e  a+ ++
  MMETSP1174-20130828|16178_1  17 VVAGASGNVGNAVMQRLAQLGCAEIRALTRSSTNPKLATLKGSFDFemiecdlSDKASLSQVF------EG---ATTAFLSSANFQGQVEAEKNFIDCAVASGVKYLVKLGTVRCYTSLDSnteyaryHAEIEEHLENTaGDMNWTVLSPNWFMSNHLGDIF-GTLPNGIIAYANNPEATARIIDPRDVGDLAAALLLAPDHSkyhGLKLNVSGPEAVSMAQVAALYTEALGRPIQAVQCSVEDWVAGAVASGFPEWLAQAVS 269
                  678999999999999999988777766655555444444444444410000004444444444......33...4578******************************998766655544400000114555666655489***************988875.5677888889999999999************99998554423367889*********************************************9998765 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.6e-11   9.5e-09       3      92 ..      16     109 ..      14     125 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.6e-11
    TIGR03466   3 vlvtGatGFvGsavvrllleeGe.evrvlvrktsdrr..nle.eldvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanveg 92 
                   +v Ga+G vG av++ l++ G+ e+r+l+r++++ +   l+ ++d E++e dl+d+asl++  +G ++ f   A+++  ++ ++++++  v +
  MMETSP1174-20130828|16178_1  16 CVVAGASGNVGNAVMQRLAQLGCaEIRALTRSSTNPKlaTLKgSFDFEMIECDLSDKASLSQVFEGATTAFLSSANFQGQVEAEKNFIDCAVAS 109
                  689******************9648******9887541144435899*************************9999998888888888777655 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00032      0.12       2      37 ..      17      53 ..      16      76 .. 0.86
   2 !    9.2   0.0   0.00048      0.18     200     246 ..     195     242 ..     194     253 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00032
    TIGR01777  2 litGgtGliGralveelekkg.hevviltrskekeke 37
                 +++G++G +G+a++++l + g  e+++ltrs+++ k 
  MMETSP1174-20130828|16178_1 17 VVAGASGNVGNAVMQRLAQLGcAEIRALTRSSTNPKL 53
                 89***************9987479*******997654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00048
    TIGR01777 200 leDlvklilfaleneevsGv.vNataPepvrnkefakalakalhrpal 246
                  + Dl++++l a ++++++G  +N++ Pe v+++++a    +al+rp  
  MMETSP1174-20130828|16178_1 195 VGDLAAALLLAPDHSKYHGLkLNVSGPEAVSMAQVAALYTEALGRPIQ 242
                  579999*************659***********************965 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.4e-05    0.0051     144     189 ..      11      56 ..       5      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-05
    TIGR02823 144 peegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkel 189
                  + +g  +V GA+G Vg+  ++ L++lG   + + ++++++  l +l
  MMETSP1174-20130828|16178_1  11 DVSGTCVVAGASGNVGNAVMQRLAQLGCAEIRALTRSSTNPKLATL 56 
                  567999****************************999999888877 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.3e-05     0.012       3      69 ..      17      82 ..      15     103 .. 0.78
   2 ?   -3.4   0.0       1.9   7.1e+02     231     280 ..     195     242 ..     190     248 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    TIGR01179  3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgs.kealkalekitevklvegdladkekleavleee 69
                 +v+G++G +G  v++ l + g   +    l+++s +  l +l+   +++++e dl+dk++l++v+e  
  MMETSP1174-20130828|16178_1 17 VVAGASGNVGNAVMQRLAQLGCAEIR--ALTRSStNPKLATLKGSFDFEMIECDLSDKASLSQVFEGA 82
                 699*****************987543..333333034567777667*******************954 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.9
    TIGR01179 231 veDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdik 280
                  v Dla+a l a +  +   +   +n+   ++ s+ +v     ++ g++i+
  MMETSP1174-20130828|16178_1 195 VGDLAAALLLAPDHSKY--HGLKLNVSGPEAVSMAQVAALYTEALGRPIQ 242
                  67888887777766553..3344688888888888888888887777776 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-05     0.022       2      71 ..      17      83 ..      16      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.9e-05
    TIGR01830  2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeve 71
                 +v Gas  +G+a+ ++la+ g+  +   + ++ +++   ++lk +  +  ++++d+sd++++++++e ++
  MMETSP1174-20130828|16178_1 17 VVAGASGNVGNAVMQRLAQLGCAEIRALT-RS-STNPKLATLKGS-FDFEMIECDLSDKASLSQVFEGAT 83
                 89*******************97665533.33.344445566664.7899*************9998776 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.5e-05     0.035       8      77 ..      16      85 ..      11      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.5e-05
    TIGR01832  8 alvtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeavee 77
                  +v+Ga+  +G+++   la+ G+  + + +++ ++ + +  +    f++++ dl+d+++ +++ + a+ +
  MMETSP1174-20130828|16178_1 16 CVVAGASGNVGNAVMQRLAQLGCAEIRALTRSSTNPKLATLKGSFDFEMIECDLSDKASLSQVFEGATTA 85
                 689*******************9877776666666655555666789*************9999887765 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.5e-05     0.032       3      73 ..      17      83 ..      15     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.5e-05
    TIGR01181  3 LvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeed 73
                 +v+G +G +G ++++ + +         + +Lt ++ + +l++l+ +  +++++ d++d++ ++++++  +
  MMETSP1174-20130828|16178_1 17 VVAGASGNVGNAVMQRLAQ-L---GCAEIRALTRSSTNPKLATLKGSFDFEMIECDLSDKASLSQVFEGAT 83
                 6899999999876655444.4...456899************************************99665 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0002     0.073       7      40 ..      16      49 ..      12     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
    TIGR04130  7 llitggtgsfgnavlrrfldtdikeirifsrdek 40
                  +++g +g  gnav++r+ +    eir ++r   
  MMETSP1174-20130828|16178_1 16 CVVAGASGNVGNAVMQRLAQLGCAEIRALTRSST 49
                 5799************************999754 PP

>> TIGR01809  Shik-DH-AROM: shikimate-5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012     0.044     126     175 ..      14      66 ..       3      88 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
    TIGR01809 126 taglviGaGGtsraavy.aLasLGvkkifvinRskd..klkkLvellvsefvi 175
                   + +v Ga G    av+  La+LG+ +i  + Rs    kl  L  ++  e++ 
  MMETSP1174-20130828|16178_1  14 GTCVVAGASGNVGNAVMqRLAQLGCAEIRALTRSSTnpKLATLKGSFDFEMIE 66 
                  36789999998888877369*************85423777777776666555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00016     0.059       5      76 ..      15      84 ..      12      92 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
    TIGR03206  5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaee 76
                 +++v+g +g +g+a+ +r+a+ g++  +  l++ +++   a+++    + e + +d++d+as+      a++
  MMETSP1174-20130828|16178_1 15 TCVVAGASGNVGNAVMQRLAQLGCA-EIRALTRSSTNPKLATLK-GSFDFEMIECDLSDKASLSQVFEGATT 84
                 789******************9965.334455555544444443.34568999********99887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 868.93
//
Query:       MMETSP1174-20130828|16181_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 780.94
//
Query:       MMETSP1174-20130828|16183_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|16186_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 361.91
//
Query:       MMETSP1174-20130828|16187_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|16191_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|16192_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|16193_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|16195_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 184.09
//
Query:       MMETSP1174-20130828|16194_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.39
# Mc/sec: 115.07
//
Query:       MMETSP1174-20130828|16196_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.55
# Mc/sec: 122.39
//
Query:       MMETSP1174-20130828|16197_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.6   0.2      0.023   11.4   0.1    1.1  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC


Domain annotation for each model (and alignments):
>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.6e-06     0.023     369     439 ..      20      92 ..       7     103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-06
    TIGR02279 369 dlvldystakriaiaaaadttesalrkavallqk..aGlkvsaiadlpGlvvlrtvamlaneaadavlkgvas 439
                   +  +   a + a+ a ++tt sa r + a + +  +  ++s i+d   ++vlr +a +  e++d      +s
  MMETSP1174-20130828|16197_1  20 SIQSEVNDAMKTAMKAKDKTTLSAIRSIKAAFTNleKENNLSEIEDPQAVIVLRKLAKMRQESIDMYRGAGTS 92 
                  4445556678899999**********9888887511556899**********************986655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 328.77
//
Query:       MMETSP1174-20130828|16204_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.42
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|16203_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.53
# Mc/sec: 381.03
//
Query:       MMETSP1174-20130828|16205_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   14.8   0.1        2.1    6.5   0.0    2.5  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00051       2.1      19      31 ..       1      13 [.       1      16 [. 0.89
   2 ?   -2.8   0.0      0.47   1.9e+03       2       8 ..      24      30 ..      23      31 .. 0.77
   3 !    6.0   0.0   0.00074         3       1      10 [.      53      62 ..      53      65 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00051
    TIGR00756 19 AlelfdeMkergi 31
                 Alel++eM+++g 
  MMETSP1174-20130828|16205_1  1 ALELLEEMRSAGE 13
                 89********995 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.47
    TIGR00756  2 tyntlis 8 
                 t++++++
  MMETSP1174-20130828|16205_1 24 TWSSVVK 30
                 8999875 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.00074
    TIGR00756  1 vtyntlisgl 10
                 ++yn++is++
  MMETSP1174-20130828|16205_1 53 ISYNAVISAC 62
                 69*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.51
# Mc/sec: 168.22
//
Query:       MMETSP1174-20130828|16207_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|16208_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1174-20130828|16212_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|16213_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   18.0   0.3     0.0004   18.0   0.2    1.0  1  TIGR00537 hemK_rel_arch: putative methylase
    0.00049   17.4   0.4    0.00049   17.4   0.3    1.0  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00061   17.0   0.0    0.00064   17.0   0.0    1.0  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    0.00097   15.9   0.2    0.00097   15.9   0.1    1.0  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
      0.001   16.5   0.0     0.0011   16.4   0.0    1.1  1  TIGR02081 metW: methionine biosynthesis protein MetW
     0.0014   15.8   0.1     0.0015   15.8   0.1    1.0  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0014   15.9   1.6     0.0014   15.9   1.1    1.0  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0047   14.9   0.1     0.0054   14.7   0.0    1.0  1  TIGR03587 Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
     0.0064   14.1   0.0     0.0064   14.1   0.0    1.0  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
      0.017   12.4   0.4      0.016   12.5   0.3    1.0  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.023   11.8   0.2      0.024   11.7   0.2    1.0  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      0.026   11.1   0.0      0.026   11.1   0.0    1.0  1  TIGR04096 dnd_rel_methyl: DNA phosphorothioation-associated putative methyltransferase
      0.026   11.8   3.2       0.03   11.6   2.2    1.0  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
      0.031   11.9   0.0      0.031   11.9   0.0    1.1  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
      0.034   12.2   0.1      0.036   12.2   0.1    1.1  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.036   11.2   0.1      0.036   11.2   0.1    1.0  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   1.6e-06    0.0004      22      65 ..      17      58 ..       6      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-06
    TIGR00537 22 dvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnn 65
                   +e+G GtG   + l++ + + +++di P+av   +    l +
  MMETSP1174-20130828|16213_1 17 TAIELGCGTGENLVCLAKACRQATGVDIVPAAVAASNA--ALTA 58
                 479*******999999****************987654..4433 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   1.9e-06   0.00049      46      99 ..       5      59 ..       1      67 [. 0.83

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.9e-06
    TIGR02021 46 ewlpkd.slkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraeke 99
                 +++    +++ ++ ++ GCGtG   + lAk   + ++vDi ++ v+ ++  + ++
  MMETSP1174-20130828|16213_1  5 DYIAAGkLPAASTAIELGCGTGENLVCLAKACRQATGVDIVPAAVAASNAALTAA 59
                 555555467788999******************************9998877665 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06   0.00064      17      66 ..      15      62 ..       4      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.5e-06
    TIGR00091 17 kplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglk 66
                 +++ +e+GcG G+ l+ lAk+  +    G+ i +  v++ ++     g++
  MMETSP1174-20130828|16213_1 15 ASTAIELGCGTGENLVCLAKACRQA--TGVDIVPAAVAASNAALTAAGVE 62
                 6899****************98765..59********9999988887775 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   3.8e-06   0.00097     291     335 ..      12      54 ..       3      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.8e-06
    TIGR00479 291 lqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnA 335
                  l  + + +++ cG G   + lAk  ++++gv++v+++v  +  nA
  MMETSP1174-20130828|16213_1  12 LPAASTAIELGCGTGENLVCLAKACRQATGVDIVPAAVAAS--NA 54 
                  66677889999**************************9654..33 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.1e-06    0.0011       9      52 ..      10      52 ..       4      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.1e-06
    TIGR02081  9 elipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlac 52
                   +pa s+ ++lGcG Ge L  l++    +++G++i  ++v+a+
  MMETSP1174-20130828|16213_1 10 GKLPAASTAIELGCGTGENLVCLAKAC-RQATGVDIVPAAVAAS 52
                 568999*****************6544.4789999998888875 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.7e-06    0.0015      68     113 ..       9      54 ..       4      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.7e-06
    TIGR00477  68 avkvvapcktldlGcGqGrnslylslaGydvdavdkneasiasvee 113
                  a k+ a + +++lGcG G+n + l+ a  + + vd  +a++a+ + 
  MMETSP1174-20130828|16213_1   9 AGKLPAASTAIELGCGTGENLVCLAKACRQATGVDIVPAAVAASNA 54 
                  55666778899******************************98765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.1   5.6e-06    0.0014      87     139 ..      15      63 ..       3      69 .] 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.6e-06
    TIGR03534  87 keklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke 139
                  +   + ++lg+G+G   ++lak +++a  ++vDi ++A++ +++ + + g+++
  MMETSP1174-20130828|16213_1  15 A--STAIELGCGTGENLVCLAKACRQA--TGVDIVPAAVAASNAALTAAGVEA 63 
                  3..4789****************9976..799*****9887777666666664 PP

>> TIGR03587  Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-05    0.0054      41      96 ..      12      65 ..       5      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-05
    TIGR03587 41 lskiasilelGaniGlnlkalkrllpkkelyaveinesaveklkaylkeinviqgs 96
                 l+  ++++elG+ +G nl  l +     +  +v+i   av+  +a l  + v  ++
  MMETSP1174-20130828|16213_1 12 LPAASTAIELGCGTGENLVCLAKA--CRQATGVDIVPAAVAASNAALTAAGVEATT 65
                 5667789**************999..67789**********999988888777666 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.5e-05    0.0064      23      74 ..       3      52 ..       1      67 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.5e-05
    TIGR02072 23 LlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqa 74
                 Ll+++ + +    ++++++GcGtG     l+k  +qa  + +Di++   +  
  MMETSP1174-20130828|16213_1  3 LLDYIAAGKLPAASTAIELGCGTGENLVCLAKACRQA--TGVDIVPAAVAAS 52
                 5566666554556789*******************99..9999998877655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   6.3e-05     0.016     161     211 ..      16      65 ..       4      69 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.3e-05
    TIGR00406 161 kkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdll 211
                   ++i++GcG G   + ++k   +++++vDi p av ++   l   +v+ ++
  MMETSP1174-20130828|16213_1  16 STAIELGCGTGENLVCLAK-ACRQATGVDIVPAAVAASNAALTAAGVEATT 65 
                  689********87777766.57899************99988888887665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   9.5e-05     0.024      52      96 ..      17      61 ..       6      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.5e-05
    TIGR01983 52 kvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdpl 96
                 + +++GcG G     la+   + tg+D++  ++++ ++  ++ ++
  MMETSP1174-20130828|16213_1 17 TAIELGCGTGENLVCLAKACRQATGVDIVPAAVAASNAALTAAGV 61
                 56899******99*******************9998877666655 PP

>> TIGR04096  dnd_rel_methyl: DNA phosphorothioation-associated putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001     0.026      17      58 ..       2      43 ..       1      58 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.0001
    TIGR04096 17 PvrlaveagllnedttifDYGCGrGdDlreleakgldsaGWD 58
                 P+   ++ag l   +t ++ GCG G+ l  l+++  +++G D
  MMETSP1174-20130828|16213_1  2 PLLDYIAAGKLPAASTAIELGCGTGENLVCLAKACRQATGVD 43
                 6667789999*************************9999988 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   0.00012      0.03      81     135 ..       9      61 ..       4      66 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
    TIGR03704  81 akersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaGg 135
                  a + +a+ + ++l cG+G   + la+a ++   + +di paav  +   l++aG 
  MMETSP1174-20130828|16213_1   9 AGKLPAASTAIELGCGTGENLVCLAKACRQ--ATGVDIVPAAVAASNAALTAAGV 61 
                  5566777899**************999876..589**********9999999985 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012     0.031      75     115 ..      12      49 ..       2      66 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
    TIGR00080  75 lkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLv 115
                  l a + ++e+G+G+G + ++la+  ++     +++ ++  v
  MMETSP1174-20130828|16213_1  12 LPAASTAIELGCGTGENLVCLAKACRQ---ATGVDIVPAAV 49 
                  778999*****************9999...55666555555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00014     0.036      16      71 ..      11      64 ..       5      69 .] 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00014
    TIGR02469 16 rlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsni 71
                 +l + +++++ G+GtG   + +a+++++   ++++  ++a+   ++ l + gv++ 
  MMETSP1174-20130828|16213_1 11 KLPAASTAIELGCGTGENLVCLAKACRQ--ATGVDIVPAAVAASNAALTAAGVEAT 64
                 67778899******************99..66999999988877776666666655 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014     0.036      39      78 ..      14      52 ..       5      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    TIGR01934 39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLeva 78
                 ++++ + + +GtG+  + lak+  ++ tgvD+ ++ ++ +
  MMETSP1174-20130828|16213_1 14 AASTAIELGCGTGENLVCLAKAC-RQATGVDIVPAAVAAS 52
                 6778999**************88.899*****98876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 159.78
//
Query:       MMETSP1174-20130828|16214_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|16217_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 416.59
//
Query:       MMETSP1174-20130828|16220_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|16215_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-14   48.9   8.5    2.3e-13   47.6   5.9    1.7  1  TIGR02232 myxo_disulf_rpt: Myxococcus cysteine-rich repeat
    1.4e-05   20.9   0.4    2.1e-05   20.3   0.3    1.1  1  TIGR00845 caca: sodium/calcium exchanger 1
     0.0071   13.0   6.0     0.0099   12.6   3.6    1.6  2  TIGR03154 sulfolob_CbsA: cytochrome b558/566, subunit A


Domain annotation for each model (and alignments):
>> TIGR02232  myxo_disulf_rpt: Myxococcus cysteine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   5.9   1.7e-16   2.3e-13       3      38 .]     276     311 ..     274     311 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 1.7e-16
    TIGR02232   3 tCGDGiieegEeCDDgNtvsgDGCSatCrlEeGfaC 38 
                   CG+G++  +E+CDD  t++gDGCS+ C++E+G+ C
  MMETSP1174-20130828|16215_1 276 VCGNGKLTTAEQCDDNGTIAGDGCSENCTVEAGYVC 311
                  6**********************************9 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.3   1.5e-08   2.1e-05     395     486 ..     327     431 ..     321     453 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.5e-08
    TIGR00845 395 skiffepgtytvlenvGsveltvvrrGgdlsktvlvdyktedGtanaGs..........dyvfteGtlvfkPgetqkelrieiidddifeed....ehfyvrlsnl 486
                  + ++f+++++  +++    ++t+ r G d    v+vdy+t   ta a +          d++ ++Gt++f  g ++  +  ei  d i+e+     e f+v l n 
  MMETSP1174-20130828|16215_1 327 ATMYFQETSFGPFDEGSLSAVTIHRMG-DSDVEVSVDYRTSSSTAVADAisndycaehgDFEAQNGTVTFAAGVDEMTVFFEIFQDGIWEQGlllyERFLVVLENP 431
                  568899999998887655666666665.999**********99998753334344444488999**************************9733336666666654 PP

>> TIGR03154  sulfolob_CbsA: cytochrome b558/566, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0      0.79   1.1e+03     231     256 ..     134     159 ..     129     162 .. 0.76
   2 !   12.6   3.6   7.2e-06    0.0099     392     461 ..     468     544 ..     446     548 .. 0.62

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.79
    TIGR03154 231 ptkdgmniggkypgqkfdgvtfkdag 256
                  +  d   i   + g  fdg +fk + 
  MMETSP1174-20130828|16215_1 134 ALMDRTSITAALTGMTFDGTSFKISA 159
                  55677888899999999999999765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 7.2e-06
    TIGR03154 392 gklgetlfdksitssfltle.lvttpptstttstssvssvttisaaips...ttvyvt...ivgvvi.aivalvilyv 461
                   +l  t f  +i + f tl  + ttpptstt++t+s++s t +sa i s   +  +v+    +g+++  ival +l v
  MMETSP1174-20130828|16215_1 468 TQLPSTHFPTTIPTPFPTLSgIPTTPPTSTTSTTTSTTS-TPTSAIITSennAKKDVSpnkDMGIIVwIIVALAVLLV 544
                  56788999999999****9835599***99988886554.55554444311133333311124544413445555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.73
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|16221_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1224.20
//
Query:       MMETSP1174-20130828|16226_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    5.1  14.1       0.77    5.1   9.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   9.7   0.00019      0.77     966    1005 ..      24      63 ..       3      77 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00019
    TIGR00927  966 dgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeenee 1005
                   ++ +gsdG  +++e+e   + ee+e+e+  e +eee nee
  MMETSP1174-20130828|16226_1   24 EDAEGSDGDSTQDEDEAGSKVEEKEDEQYSEADEEEVNEE 63  
                   5566677655555555544444444444444445544554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|16229_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.50
# Mc/sec: 1005.76
//
Query:       MMETSP1174-20130828|16231_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.76
# Mc/sec: 300.45
//
Query:       MMETSP1174-20130828|16234_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   37.9   2.0    1.9e-10   37.8   1.4    1.0  1  TIGR00337 PyrG: CTP synthase
  ------ inclusion threshold ------
       0.24    8.5   3.6       0.27    8.4   2.5    1.0  1  TIGR01968 minD_bact: septum site-determining protein MinD


Domain annotation for each model (and alignments):
>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   1.4   9.5e-14   1.9e-10       3      36 ..      17      50 ..      15      51 .] 0.94

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 9.5e-14
    TIGR00337  3 akyivvtGGvvsslGkGitaaslgrllkalglkv 36
                 +k+ivvtGGv+s++GkG+ta+s+g  +k +g +v
  MMETSP1174-20130828|16234_1 17 TKFIVVTGGVISGIGKGVTASSIGVCMKMMGARV 50
                 79***************************99988 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5   0.00013      0.27       2      33 ..      18      50 ..      17      51 .] 0.90

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00013
    TIGR01968  2 kvivvtsGk.GGvGkttttanlgtalaklgkkv 33
                 k ivvt G   G+Gk  t++++g+++  +g +v
  MMETSP1174-20130828|16234_1 18 KFIVVTGGViSGIGKGVTASSIGVCMKMMGARV 50
                 679***99648*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|16235_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 211.73
//
Query:       MMETSP1174-20130828|16233_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1301.04
//
Query:       MMETSP1174-20130828|16236_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.52
# Mc/sec: 1175.21
//
Query:       MMETSP1174-20130828|16238_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1174-20130828|16241_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 218.46
//
Query:       MMETSP1174-20130828|16239_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 866.18
//
Query:       MMETSP1174-20130828|16243_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|16247_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.74
# Mc/sec: 167.66
//
Query:       MMETSP1174-20130828|16248_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.50
# Mc/sec: 314.13
//
Query:       MMETSP1174-20130828|16245_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 1031.16
//
Query:       MMETSP1174-20130828|16252_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-11   39.3   0.0    6.1e-11   39.3   0.0    1.0  1  TIGR00376 TIGR00376: putative DNA helicase
  ------ inclusion threshold ------
      0.019   11.3   0.0       0.02   11.3   0.0    1.0  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0     3e-14   6.1e-11     363     406 ..       8      53 ..       1      72 [. 0.77

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 3e-14
    TIGR00376 363 eFDvvviDEasqAlepsvliPlvkar..klilAGDhkqLPPtvlse 406
                  eF  vv+DEa+q +ep ++  l+ a+  ++++ GD +qLPPtv   
  MMETSP1174-20130828|16252_1   8 EFSLVVLDEAAQTTEPALICALATAKaeQCVMIGDTRQLPPTVAVA 53 
                  89**************988887655555**************9763 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.5e-06      0.02     262     303 ..       8      48 ..       1      58 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.5e-06
    TIGR01447 262 plDvlvvDEaSMvdlelmakLlealkketkLIllGDknQLas 303
                  ++ ++v DEa   + + ++  l a++k ++ +++GD+ QL++
  MMETSP1174-20130828|16252_1   8 EFSLVVLDEAAQTTEPALICAL-ATAKAEQCVMIGDTRQLPP 48 
                  6789999**9998877655443.6678899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1174-20130828|16251_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.59
# Mc/sec: 140.94
//
Query:       MMETSP1174-20130828|16261_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.94
# Mc/sec: 102.50
//
Query:       MMETSP1174-20130828|16263_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 253.28
//
Query:       MMETSP1174-20130828|16265_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 166.42
//
Query:       MMETSP1174-20130828|16266_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   27.1   0.0    0.00068   14.9   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00046   16.4   0.0    0.00062   16.0   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    0.00074   15.6   0.0    0.00074   15.6   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
     0.0024   14.7   0.0     0.0029   14.5   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
  ------ inclusion threshold ------
      0.021   11.2   0.0      0.023   11.0   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      0.022   11.1   0.0      0.028   10.8   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06   0.00068     699     724 ..       3      28 ..       1      42 [. 0.87
   2 !   10.8   0.0   1.8e-05     0.012     727     753 ..      81     107 .]      55     107 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
    TIGR00957 699 gsvayvpqqawiqndslrenilfgka 724
                   svayvpq+a+i n +lr+ni f k+
  MMETSP1174-20130828|16266_1   3 SSVAYVPQDAFIFNGTLRDNIHFFKR 28 
                  59*******************99765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 1.8e-05
    TIGR00957 727 ekyykavleacalladleilpsgdrte 753
                   + y+a+++a al++dle +p+gd te
  MMETSP1174-20130828|16266_1  81 RDAYNAAIRASALVPDLEAFPAGDATE 107
                  5689*********************98 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-07   0.00062     542     565 ..       4      27 ..       2      33 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9e-07
    TIGR03375 542 nigyvpqdvtLfyGtlrdNialga 565
                  +++yvpqd+ +f+GtlrdNi + +
  MMETSP1174-20130828|16266_1   4 SVAYVPQDAFIFNGTLRDNIHFFK 27 
                  689*****************9865 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-06   0.00074     552     578 ..       2      28 ..       1      67 [. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
    TIGR03796 552 anslalvdqdivlfegtvrdnltlwde 578
                  ++s+a+v qd ++f+gt+rdn+ ++ +
  MMETSP1174-20130828|16266_1   2 VSSVAYVPQDAFIFNGTLRDNIHFFKR 28 
                  589*******************99976 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.2e-06    0.0029     396     420 ..       3      27 ..       1      43 [. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.2e-06
    TIGR02857 396 kqiawvpQkPllfegtvaenirlar 420
                  +++a+vpQ +++f+gt+++ni + +
  MMETSP1174-20130828|16266_1   3 SSVAYVPQDAFIFNGTLRDNIHFFK 27 
                  579******************9765 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05     0.023     549     570 ..       4      25 ..       2      48 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.4e-05
    TIGR01193 549 linylPqePfifsGsilenlll 570
                  +++y+Pq+ fif+G++ +n+ +
  MMETSP1174-20130828|16266_1   4 SVAYVPQDAFIFNGTLRDNIHF 25 
                  689****************865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.1e-05     0.028     393     417 ..       4      28 ..       2      40 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.1e-05
    TIGR01842 393 siGYlPqdveLfeGtvaeniaRfee 417
                  s+ Y+Pqd  +f+Gt+ +ni  f++
  MMETSP1174-20130828|16266_1   4 SVAYVPQDAFIFNGTLRDNIHFFKR 28 
                  799*****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.64
# Mc/sec: 220.67
//
Query:       MMETSP1174-20130828|16269_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.52
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|16272_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 332.25
//
Query:       MMETSP1174-20130828|16276_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   17.1   0.0    0.00081   17.0   0.0    1.0  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit


Domain annotation for each model (and alignments):
>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     2e-07   0.00081       8      61 ..      15      69 ..      10      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2e-07
    TIGR03771  8 llgllGpnGaGk.ttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefa 61
                 ll+llG nGa k  t lr ++  ++++k + ++a+++++kgr +    p+r   a
  MMETSP1174-20130828|16276_1 15 LLTLLGGNGALKrVTQLRKMVFATAKEKRKRQIAANNAKKGRPDAAMAPKRESHA 69
                 799*******874699*****99**9************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 343.97
//
Query:       MMETSP1174-20130828|16278_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|16286_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|16284_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 559.82
//
Query:       MMETSP1174-20130828|16288_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.78
# Mc/sec: 148.91
//
Query:       MMETSP1174-20130828|16289_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|16290_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.63
# Mc/sec: 251.41
//
Query:       MMETSP1174-20130828|16291_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|16296_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 378.94
//
Query:       MMETSP1174-20130828|16299_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      249  (0.0607021); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1174-20130828|16301_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00046   17.5   0.1    0.00071   16.9   0.0    1.2  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-07   0.00071       8     109 ..      64     171 ..      55     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.7e-07
    TIGR02427   8 gaeadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvp.egpysied...laddvlallDalgiek.aavcGlSlGGliaqaLaarrpdr.vealvl 109
                  g+ ++ p++v+    G +l  w+ v++ +++  +   y + G GlSd   + + ++ d    ++d+   l alg+   ++v+    GGl a +La rr+ + v+ lvl
  MMETSP1174-20130828|16301_1  64 GSVDSSPTVVFEAGHGETLYEWERVVKMVSPFANCFSYTRSGLGLSDSSsDSTETVRDgksITQDLETYLKALGVTGpIVVVAHGTGGLYARMLAERRGSLdVAGLVL 171
                  667799****************************************865156678865333799***********8637788999***********998743777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1129.24
//
Query:       MMETSP1174-20130828|16307_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|16302_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.52
# Mc/sec: 1142.21
//
Query:       MMETSP1174-20130828|16310_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   13.4   0.0       0.01   13.3   0.0    1.0  1  TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF


Domain annotation for each model (and alignments):
>> TIGR03147  cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.5e-06      0.01      70      89 ..       6      25 ..       3      30 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.5e-06
    TIGR03147 70 vdeGkseqeiidamteryGd 89
                 +d G +  e+++amt+r+G+
  MMETSP1174-20130828|16310_1  6 IDSGDETPEVVEAMTDRFGQ 25
                 899****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 156.43
//
Query:       MMETSP1174-20130828|16317_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-18   65.1   0.0    3.5e-17   60.6   0.0    2.0  2  TIGR02452 TIGR02452: TIGR02452 family protein


Domain annotation for each model (and alignments):
>> TIGR02452  TIGR02452: TIGR02452 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0045        18      98     120 ..       1      24 [.       1      27 [. 0.83
   2 !   60.6   0.0   8.5e-21   3.5e-17     182     264 ..     158     238 ..     141     240 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0045
    TIGR02452  98 nGAkAqEEslara.SalYkcllka 120
                  +G +AqEE+l r   +lY+ ll a
  MMETSP1174-20130828|16317_1   1 SGGRAQEEDLYRLlPQLYPALLDA 24 
                  5899*******9637999999875 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 8.5e-21
    TIGR02452 182 seeeleealknRikkvlklaedqnvkalvLGAwGcGvFgndpaevakifkdllkpegsfkgrikevvFaildrskqkailqiF 264
                  + +e  + ++ R++ vl+ a+  +   lvLGA+GcG+Fgn p  va if+++l++++ f+g++ +vvFai+d  + + +l  F
  MMETSP1174-20130828|16317_1 158 AGSEWAADFTLRVRAVLEAARRSGHPNLVLGAFGCGAFGNPPGPVATIFREQLATDE-FRGAFANVVFAIIDPLG-TGNLPLF 238
                  55677788999*******************************************555.9*************874.5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1212.34
//
Query:       MMETSP1174-20130828|16319_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.52
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|16323_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.2  10.4     0.0016   14.1   7.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0031   13.1   9.0     0.0035   12.9   6.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0048   13.2   5.2     0.0051   13.1   3.6    1.0  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
  ------ inclusion threshold ------
      0.017   11.4   7.9      0.019   11.3   5.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.018   11.8   4.7       0.02   11.6   3.3    1.0  1  TIGR00634 recN: DNA repair protein RecN
      0.037   10.8   4.6      0.041   10.6   3.2    1.1  1  TIGR00998 8a0101: efflux pump membrane protein
      0.062   10.1   4.8      0.079    9.7   3.3    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
      0.086   11.0   4.6       0.12   10.5   3.2    1.3  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
        0.1    8.9   9.2       0.12    8.7   6.3    1.0  1  TIGR03545 TIGR03545: TIGR03545 family protein
       0.63    5.9   7.4       0.84    5.5   5.1    1.2  1  TIGR01005 eps_transp_fam: exopolysaccharide transport protein family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   7.2   3.8e-06    0.0016     319     404 ..       5      90 ..       1      97 [. 0.73

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-06
    TIGR02168 319 eeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaeler 404
                   ++++q++ l skk+e+e+ l   +eel++l++++++ +a++e+a++e++     +++l+e+l+++++++ +  ++++sl+++ e 
  MMETSP1174-20130828|16323_1   5 VAVKQQVQLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSLASTCEA 90 
                  56677777777888888888888888888888888888888888888888888888888888888888887777777777777665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   6.3   8.6e-06    0.0035     301     379 ..       8      86 ..       2      97 .. 0.38

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.6e-06
    TIGR02169 301 kaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdk 379
                  k +++ l+++ +e e  l   +e+la++ +++++ ++ +e+ ++ei+++  +  +lke+l+++++++e+  +e+++++ 
  MMETSP1174-20130828|16323_1   8 KQQVQLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSLAS 86 
                  3333333333333333333333333333333333333333333333333333333333333333333333333333333 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   3.6   1.3e-05    0.0051     206     285 ..       6      85 ..       1      94 [. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-05
    TIGR03185 206 eieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavrael 285
                  +++++++ l  +  e e       +e+a+l k+++e++ ++e ++++++++ g++ + +e+l+  +++ ea l++++   
  MMETSP1174-20130828|16323_1   6 AVKQQVQLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSLA 85 
                  5678899999999999999999999******************************9999999999999999998887654 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.5   4.7e-05     0.019      72     147 ..      12      87 ..       4      97 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.7e-05
    TIGR03319  72 kerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqe 147
                  +   ++ ++ e  l+ k+e+l++ ++++++ + ++e  ++e+++k  ++++ +e+l+  +++ ++ L+++ +l+++
  MMETSP1174-20130828|16323_1  12 QLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSLAST 87 
                  445556677889999999*****999************************************99999999998754 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.3   4.9e-05      0.02     250     311 ..      11      75 ..       3      95 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.9e-05
    TIGR00634 250 leslaearaelase...idaslkelaekveealteveeatrelreyldeleadperlneieerla 311
                  ++ l + ++e++++    d++l++l+++v+e+   ve a +e+r+   +++  +e+l++ e++ +
  MMETSP1174-20130828|16323_1  11 VQLLSSKKDEDEATlmcKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYE 75 
                  33333444444444334899999999999999999999999999999999999999999888753 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.2    0.0001     0.041      76     138 ..      19      85 ..       4      96 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
    TIGR00998  76 tdaelalekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqae....ldleRresll 138
                   + e+ l   +++la l+++v++  ++v++ ++++ +++  +  ++ekl+ ae     dl+  +sl+
  MMETSP1174-20130828|16323_1  19 DEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAEtkyeADLNEMKSLA 85 
                  4556666677899***************************************966666777777665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.3   0.00019     0.079     127     184 ..       7      71 ..       2      96 .. 0.47

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
    TIGR01843 127 vkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqq.......leliseelealr 184
                  vk+q++l++s+k++ +a+l   +++++ql++++++++a ++a++++       +  ++e+l+a++
  MMETSP1174-20130828|16323_1   7 VKQQVQLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEirtkdgdMSSLKEKLQAAE 71 
                  45555555555555544444444444444444444444444444440000000444444444433 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2   0.00029      0.12      26      87 ..      23      84 ..       3      94 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00029
    TIGR03495 26 aslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierL 87
                 a+l   +++l +  ++++++++ +ea++ e+++++ +   L+++l+ ae++ +   ++++ L
  MMETSP1174-20130828|16323_1 23 ATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSL 84
                 44444455555555555555555555555555555555555555555555544444444444 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.3   0.00028      0.12     192     272 ..       3      86 ..       1      96 [. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00028
    TIGR03545 192 dleeykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlkql...kaqlaelkkapqkDlkrleekya 272
                  +l+++k++++ l  ++ ++ + l  + eel ++ k++++  ++++ akn++ ++  ++   k++l++++   ++Dl+ +++++ 
  MMETSP1174-20130828|16323_1   3 ELVAVKQQVQLLSSKKDEDEATLMCKDEELAQLMKQVQESDASVEAAKNEIRTKDGDMsslKEKLQAAETKYEADLNEMKSLAS 86 
                  57899**********9999999*****************************997655511166777777777889998888776 PP

>> TIGR01005  eps_transp_fam: exopolysaccharide transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.1     0.002      0.84     319     406 ..       5      88 ..       2      97 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.002
    TIGR01005 319 vaaksslrelkaqiaeelqkltksykneaevaqareeslskkvnslkakskdaseqevdldeLerdaaakkelyesyLtdyrqaksrq 406
                  va+k + + l  +  e    l+    +++e aq  + +++++  s++a+ +++  +  d+  L+ + +a  + ye  L++++ ++s  
  MMETSP1174-20130828|16323_1   5 VAVKQQVQLLSSKKDEDEATLMC---KDEELAQLMK-QVQESDASVEAAKNEIRTKDGDMSSLKEKLQAAETKYEADLNEMKSLASTC 88 
                  66777777777666666555654...3445555555.5555666788888889999999**********************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      321  (0.0782545); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 350.81
//
Query:       MMETSP1174-20130828|16326_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-28   97.7   3.3    2.2e-28   97.5   2.3    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.6e-22   76.8   2.5      3e-22   76.7   1.7    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    4.6e-07   27.9   0.9    5.9e-07   27.5   0.6    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   2.3   1.6e-31   2.2e-28       2      72 ..      28      99 ..      27     100 .] 0.95

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 1.6e-31
    TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleg 72
                 +Y++Lgv+k+A+e+e+k+A+rk+  kyHPD+n++  k+ae+kfke++eAyevL+d++kr+ YD +g++gl+g
  MMETSP1174-20130828|16326_1 28 HYKTLGVPKSADEAELKRAHRKMCLKYHPDKNRDdPKKAETKFKEVQEAYEVLKDPQKRQVYDTYGEQGLDG 99
                 6*******************************9944689*****************************9986 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   1.7   2.2e-25     3e-22       4      73 ..      28      99 ..      26     100 .] 0.95

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 2.2e-25
    TIGR03835  4 yyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDkyGhDGvDr 73
                 +y  Lg+ + ade e+k+a rk+  kyhPD+n++    a+  f+e+ ea++vL +P+kr+ yD yG  G+D+
  MMETSP1174-20130828|16326_1 28 HYKTLGVPKSADEAELKRAHRKMCLKYHPDKNRDdpKKAETKFKEVQEAYEVLKDPQKRQVYDTYGEQGLDG 99
                 5999*****************************9966899******************************96 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.6   4.3e-10   5.9e-07       4      55 ..      39      88 ..      37      92 .. 0.94

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4.3e-10
    TIGR00714  4 DekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRae 55
                 De  L++ +rk+  +yHPD  k+  + ++a  +  e+ +Ay+ Lkdp kR  
  MMETSP1174-20130828|16326_1 39 DEAELKRAHRKMCLKYHPD--KNRDDPKKAETKFKEVQEAYEVLKDPQKRQV 88
                 8999***************..9999999********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 425.77
//
Query:       MMETSP1174-20130828|16328_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 742.44
//
Query:       MMETSP1174-20130828|16332_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 446.03
//
Query:       MMETSP1174-20130828|16334_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 480.58
//
Query:       MMETSP1174-20130828|16338_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.9   0.1     0.0059   13.5   0.1    1.1  1  TIGR00774 NhaB: Na+/H+ antiporter NhaB


Domain annotation for each model (and alignments):
>> TIGR00774  NhaB: Na+/H+ antiporter NhaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.4e-06    0.0059     133     189 ..      59     115 ..      48     118 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.4e-06
    TIGR00774 133 lafcfaaaflsafldaltvvavvisvavgfysiyhkvasgnpiedvdltdddkitel 189
                   + c + + ++a l  +tvvavv +va g  +    v ++++ e+ d +d+  i+e+
  MMETSP1174-20130828|16338_1  59 SSSCSTETTVAAQLIVVTVVAVVTAVAAGTNGGETAVVATKNAEEEDSADNGSIVEE 115
                  56788899999***************************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 675.03
//
Query:       MMETSP1174-20130828|16340_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|16343_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 187.98
//
Query:       MMETSP1174-20130828|16344_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 479.33
//
Query:       MMETSP1174-20130828|16345_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 404.58
//
Query:       MMETSP1174-20130828|16342_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1915.63
//
Query:       MMETSP1174-20130828|16346_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1016.32
//
Query:       MMETSP1174-20130828|16351_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1123.52
//
Query:       MMETSP1174-20130828|16353_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1174-20130828|16359_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|16360_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1059.79
//
Query:       MMETSP1174-20130828|16361_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1462.58
//
Query:       MMETSP1174-20130828|16364_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|16366_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 803.58
//
Query:       MMETSP1174-20130828|16367_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:01.07
# Mc/sec: 749.99
//
Query:       MMETSP1174-20130828|16369_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   14.7   0.0       0.36    6.6   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0001      0.42     131     156 ..      84     109 ..      49     114 .. 0.87
   2 !    6.6   0.0   8.9e-05      0.36     130     154 ..     116     140 ..     112     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0001
    TIGR00870 131 gitalilAihkqnyeivklLlekgas 156
                    tal+lA+   ++  v++L   ga+
  MMETSP1174-20130828|16369_1  84 ERTALHLAAKAGQVDAVRMLCRAGAE 109
                  68*******************99996 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 8.9e-05
    TIGR00870 130 kgitalilAihkqnyeivklLlekg 154
                  +g t+l+lA+ + +  +vk+Ll+  
  MMETSP1174-20130828|16369_1 116 RGMTPLHLAALEGKGPCVKVLLDFS 140
                  799*******************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 561.72
//
Query:       MMETSP1174-20130828|16371_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|16372_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 208.40
//
Query:       MMETSP1174-20130828|16374_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.40
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|16375_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|16380_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   17.0   0.4    0.00039   16.9   0.3    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
     0.0092   11.7   0.0      0.011   11.5   0.0    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.015   12.2   0.0    1.1  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
      0.027   11.7   0.0      0.036   11.3   0.0    1.2  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   3.8e-07   0.00039      66     142 ..       8      84 .]       2      84 .] 0.83

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.8e-07
    TIGR00879  66 gllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvig 142
                  g++  + + v  a+la ++f  ++ s+++d +    ++++s+ ++++++gal +g l    gr+ s +i++ +f++g
  MMETSP1174-20130828|16380_1   8 GTTVSFTSSVDDAILADTNFCGEYWSQKDDTACDAASWLTSVIYLAAIFGALASGPLCEACGRRVSHIIGSSIFLVG 84 
                  555666666777777888888887777777777788999***********************************998 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     1e-05     0.011     203     241 ..      42      80 ..      30      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1e-05
    TIGR01299 203 nkgllglivylgmmvgaflwggladklgrkqsllislsv 241
                  +  +l +++yl  + ga+  g l++  gr+ s +i  s+
  MMETSP1174-20130828|16380_1  42 AASWLTSVIYLAAIFGALASGPLCEACGRRVSHIIGSSI 80 
                  457*****************************9998776 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05     0.015      47      88 ..      40      82 ..      21      84 .] 0.67

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
    TIGR00891 47 kd.vafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfs 88
                  d +++l+s++++   +Gal  G + +  grr++ ++  ++f 
  MMETSP1174-20130828|16380_1 40 CDaASWLTSVIYLAAIFGALASGPLCEACGRRVSHIIGSSIFL 82
                 3413466677777777777777777777777777777666665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.5e-05     0.036      46      82 ..      46      83 ..      34      84 .] 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
    TIGR00710 46 ltlyllgla.vgqLllGplsDsyGRkpvlLlgllvfal 82
                 lt+ ++  a +g L  Gpl  + GR+   ++g  +f +
  MMETSP1174-20130828|16380_1 46 LTSVIYLAAiFGALASGPLCEACGRRVSHIIGSSIFLV 83
                 55555444427************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|16378_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.4   0.0    0.00035   16.9   0.0    1.6  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.6e-08   0.00035     523     587 ..     134     199 ..     111     202 .. 0.88
   2 ?   -2.1   0.0      0.05   2.1e+02     382     409 ..     291     318 ..     286     321 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 8.6e-08
    TIGR01389 523 aLfeaLrelRkelaeeenv.ppyviFsDstLkelaekkPatlnellkikGvGeakldrygeallev 587
                    f+aLre++    +e +   p vi ++ tL e+++  P +l++l ++ G+G  +++++g  +l  
  MMETSP1174-20130828|16378_1 134 PAFDALREWKRARGRELGYnNPCVICHNRTLCEMVRLLPGKLSDLSHVWGMGPSRVEQHGLLMLSA 199
                  569******9999998876379*************************************9887765 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.05
    TIGR01389 382 eveeCgnCdnCldpakavdatveaqkil 409
                  +v+ C  C   + + + +d +v++qk+l
  MMETSP1174-20130828|16378_1 291 RVDGCAACARYVADGRPFDFAVQSQKLL 318
                  578899********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.69
# Mc/sec: 816.80
//
Query:       MMETSP1174-20130828|16381_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|16386_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1174-20130828|16383_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.56
# Mc/sec: 952.21
//
Query:       MMETSP1174-20130828|16387_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 287.67
//
Query:       MMETSP1174-20130828|16394_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.49
# Mc/sec: 140.07
//
Query:       MMETSP1174-20130828|16395_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|16397_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1174-20130828|16401_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.55
# Mc/sec: 93.59
//
Query:       MMETSP1174-20130828|16402_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1662.08
//
Query:       MMETSP1174-20130828|16404_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-28   97.1   0.0    2.5e-28   96.8   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0     6e-32   2.5e-28      60     300 ..       3     259 .]       1     259 [] 0.79

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 6e-32
    TIGR00763  60 dvykvgvlaqilelvklkdekskketlkvvleglrrikikelvekeevlvvkveelkeeelekddeevkalseeiletlkeliklsklfreqvetlkalek................leepakladlvaaslelkeveekqevleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeek....dkkdelieklkekleelklpeevlkviekeleklelleasssefsvtrnYld 300
                  +v+++g +++i++l ++   ks+k +++++++gl+rik+++++ + ++ v+ v+   +     ++e  + + e++ + lk+ +++ +   + v+  ++  +                 ++p  lad+va  l  ++ e +q+vle+++v +R++ v++l+ ++++ +++ +++++kv + l  +qr+++L++ql+ai+kElGe +    d++d+ ++kl + le++++p  v + + ++l++l+++ ++s e s++rnYl+
  MMETSP1174-20130828|16404_1   3 QVHSIGCAVRIIRLGRAR--KSDKFKYSMLIRGLHRIKLERVSCTDPFPVADVSLPVDMRGLGSSEMNEVMGEKLRSALKNFLATLR--SDGVADAESKGTargsmffsrllvdalkSSTPGILADTVAGLLPKASLEVQQKVLEQLDVVERVEYVTSLVLSQTAEMEVLKSVNSKVATDLAAQQRKFYLRQQLQAIQKELGEGDnstgDEDDDDMAKLVTALETASFPPAVHDAAMRDLKRLRRTPPQSPEHSTIRNYLE 259
                  689999999999999854..58899*****************998888888887655444444444444444444444444444433..2222222222112233344445555665899*************9*9******************************************************************86522226677778*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 876.54
//
Query:       MMETSP1174-20130828|16409_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|16405_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1213.78
//
Query:       MMETSP1174-20130828|16408_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 423.75
//
Query:       MMETSP1174-20130828|16410_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-08   29.8   0.0      7e-08   29.5   0.0    1.1  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.7e-11     7e-08      50     122 ..      33     103 ..      25     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.7e-11
    TIGR03466  50 GdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravl.eaAleagvervvytssvatlgvked 122
                   d++    l++al+Gc+al+H AAd +   +++ + y+    ++++++ +  +++ v rvvytss a++   +d
  MMETSP1174-20130828|16410_1  33 CDVSKVGGLDEALSGCNALIHAAADADTPLERRPAQYTC---SSQHIIdSVGRTKSVSRVVYTSSAAAIMGDTD 103
                  577777889*****************9877777665554...44555515678999**********99976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 536.47
//
Query:       MMETSP1174-20130828|16407_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1575.62
//
Query:       MMETSP1174-20130828|16416_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|16418_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|16421_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1174-20130828|16424_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 635.04
//
Query:       MMETSP1174-20130828|16422_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1705.44
//
Query:       MMETSP1174-20130828|16428_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 213.51
//
Query:       MMETSP1174-20130828|16429_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 1039.41
//
Query:       MMETSP1174-20130828|16431_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1174-20130828|16433_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.46
# Mc/sec: 246.76
//
Query:       MMETSP1174-20130828|16430_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1359.26
//
Query:       MMETSP1174-20130828|16435_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 788.63
//
Query:       MMETSP1174-20130828|16438_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.69
# Mc/sec: 709.68
//
Query:       MMETSP1174-20130828|16443_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.3   4.6       0.02   13.1   3.2    1.1  1  TIGR02444 TIGR02444: TIGR02444 family protein


Domain annotation for each model (and alignments):
>> TIGR02444  TIGR02444: TIGR02444 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.2   4.9e-06      0.02      62     114 ..      11      64 ..       1      66 [. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.9e-06
    TIGR02444  62 kwsedvvrplRavRrqlkqalletde..eakaalrakvkalELeaEkllqsslea 114
                  k +e+v+++ +++ ++lk++++ + +  +  +al ++v  +ELeaEkl+ ++lea
  MMETSP1174-20130828|16443_1  11 KLEETVLEAEKNLQSRLKEWQTFQSQrdVEWQALLRRVE-AELEAEKLKSARLEA 64 
                  5789**************997544333399999999996.6************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 217.94
//
Query:       MMETSP1174-20130828|16446_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   10.2   3.4       0.19    9.9   2.3    1.2  1  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.3   4.7e-05      0.19      29      73 ..       5      49 ..       2      53 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.7e-05
    TIGR02976 29 krktaaslstddlalLeelsekakrleeRidtLEriLdeespnwr 73
                 +r+  +++ ++  a+  +l++     ++R+ +LEr L++e+++ +
  MMETSP1174-20130828|16446_1  5 RRRGQVEVHHQARARHLDLTKLTSLYQARVTQLERALEAEQARTA 49
                 666677777777777778888888889*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|16447_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 270.42
//
Query:       MMETSP1174-20130828|16451_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 470.76
//
Query:       MMETSP1174-20130828|16448_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 222.50
//
Query:       MMETSP1174-20130828|16458_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|16455_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   30.1   6.3    0.00012   18.0   0.0    2.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.2e-08   31.2   0.8    8.3e-08   29.9   0.5    1.7  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.1e-05   22.4   0.1       0.14   10.7   0.0    2.8  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    6.8e-05   20.4   6.0     0.0029   15.2   0.1    3.0  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00061   15.9   0.1     0.0013   14.8   0.1    1.5  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-07   0.00012     750     814 ..       4      68 ..       2      71 .. 0.77
   2 !   15.1   0.0     1e-06   0.00085     742     805 ..      71     133 ..      67     136 .. 0.76
   3 ?   -5.7   2.9         2   1.6e+03     732     778 ..     411     457 ..     388     517 .. 0.45

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.4e-07
    TIGR02917 750 gntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdnavvLNNLAwla 814
                  ++  eA+ +lea  ke+p+d+  r++lA +  + k+ ++  + Y+ v+ + pd+ ++L  LA ++
  MMETSP1174-20130828|16455_1   4 KRYHEAVPVLEAAIKEDPQDIISRYNLAVSCFQLKKFAESKASYEAVLSLDPDHEMALDGLAIIS 68 
                  55678888888888888888888888888888888888888888888888888888888888765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1e-06
    TIGR02917 742 LaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdnav 805
                  +++al ++g+ a+A+  le+   ++pk+   + +l++ +l  k++++A + Y++++  +pdn +
  MMETSP1174-20130828|16455_1  71 MGSALCQKGDFAAAVPFLEQAVGRKPKETT-LCNLGNCLLRLKQYNEAKQCYDQTLMISPDNQQ 133
                  567788888888888888888888888764.578888888888888888888888888888865 PP

  == domain 3    score: -5.7 bits;  conditional E-value: 2
    TIGR02917 732 rapssqtvikLaeallasgntaeAaktleawLkehpkdavlrtalAe 778
                  +++ ++ +i  a+a +as +  +  + + a   + p+ + ++  lA+
  MMETSP1174-20130828|16455_1 411 KSAEAEVAIAAAAAVSASSKITKMREAASALPMDSPERMEIEEKLAQ 457
                  23333333333333333333333333333333333333333333333 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.5     1e-10   8.3e-08      47     176 ..       6     139 ..       3     156 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1e-10
    TIGR02521  47 lekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlN.......NYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllela 176
                  +++A   le A++ dp+d      lA+   ql++  + ++s++  l+l+p+   +l          G+ Lcq++++  A   +e+A+  +    ++ ++ N+g c+l++++ ++a++   + l i p+++++ +  +
  MMETSP1174-20130828|16455_1   6 YHEAVPVLEAAIKEDPQDIISRYNLAVSCFQLKKFAESKASYEAVLSLDPDHEMALDglaiisaHMGSALCQKGDFAAAVPFLEQAVGRK---PKETTLCNLGNCLLRLKQYNEAKQCYDQTLMISPDNQQATQGXK 139
                  66788899*******************************************987765222222268*********************875...57789*******************************99987554 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0006      0.49      16      79 ..       4      64 ..       2      71 .. 0.87
   2 !   10.7   0.0   0.00017      0.14      45     114 ..      71     136 ..      68     141 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0006
    TIGR02795 16 gdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdal 79
                 ++Y++A   ++a +k+ P++     ++Y l+ + ++ kk++++++++++v++ +p++e a d l
  MMETSP1174-20130828|16455_1  4 KRYHEAVPVLEAAIKEDPQDII---SRYNLAVSCFQLKKFAESKASYEAVLSLDPDHEMALDGL 64
                 6788888888888888888876...68******************************9987766 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00017
    TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakl 114
                  +G al +k+++++A    +++v + pk++     l +lg++l +l+q ++Ak+ +++     P++++a +
  MMETSP1174-20130828|16455_1  71 MGSALCQKGDFAAAVPFLEQAVGRKPKET----TLCNLGNCLLRLKQYNEAKQCYDQTLMISPDNQQATQ 136
                  79999999999999999999999888876....6999******************998888888887766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0008      0.66      32      96 ..       4      68 ..       2      98 .. 0.79
   2 !   15.2   0.1   3.5e-06    0.0029      55      88 ..     101     134 ..      69     138 .. 0.81
   3 ?   -1.8   0.4      0.63   5.2e+02      70      98 ..     414     442 ..     398     465 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0008
    TIGR02552 32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecl 96
                 ++y eA+ + ++ +  dp++    + La+++ +lk+++e  a Y++ ++ld+d+  ++  +a+  
  MMETSP1174-20130828|16455_1  4 KRYHEAVPVLEAAIKEDPQDIISRYNLAVSCFQLKKFAESKASYEAVLSLDPDHEMALDGLAIIS 68
                 68888888888888888998888899999999999999999999999999999987765555544 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.5e-06
    TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaaaldlddprp 88 
                  +  L+ cl +lk+y+eA ++Y+  +++++d+ ++
  MMETSP1174-20130828|16455_1 101 LCNLGNCLLRLKQYNEAKQCYDQTLMISPDNQQA 134
                  5689*************************99876 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.63
    TIGR02552  70 eAiaaYalaaaldlddprpvyhaaeclla 98 
                  eA  a a+aaa+++++ +   + a + l 
  MMETSP1174-20130828|16455_1 414 EAEVAIAAAAAVSASSKITKMREAASALP 442
                  33334444444444444444444444444 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-06    0.0013      91     193 ..      29     137 ..       8     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
    TIGR03939  91 alAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladag.......kdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellke 193
                  +lA ++ ++k+++++ + y+ +l+ dP  + +l Gla ++a +g       + + A   l++++ r+p ++ +l +l+  l +++++ +a ++++q l  +Pdn+++ ++
  MMETSP1174-20130828|16455_1  29 NLAVSCFQLKKFAESKASYEAVLSLDPDHEMALDGLAIISAHMGsalcqkgDFAAAVPFLEQAVGRKP-KETTLCNLGNCLLRLKQYNEAKQCYDQTLMISPDNQQATQG 137
                  68999999*******************************99886222222257889999999999999.667777899999999*********************99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.70
# Mc/sec: 1374.57
//
Query:       MMETSP1174-20130828|16460_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 995.92
//
Query:       MMETSP1174-20130828|16463_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|16465_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 241.44
//
Query:       MMETSP1174-20130828|16470_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|16476_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.32
# Mc/sec: 358.85
//
Query:       MMETSP1174-20130828|16471_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-82  275.1   3.9    5.4e-56  187.9   0.1    3.1  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    7.3e-38  127.7   3.3    2.3e-30  102.9   0.1    2.8  3  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    6.8e-36  121.5   2.7    2.4e-25   86.6   0.1    3.0  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.5e-34  116.4   0.4    5.1e-28   95.5   0.1    2.4  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    3.4e-32  108.8   4.4      8e-24   81.1   0.6    2.1  2  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
      2e-28   96.9   0.8    2.6e-19   66.8   0.1    2.4  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
      1e-20   71.9   0.1    6.1e-15   52.9   0.0    2.3  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    5.3e-19   65.7   0.2    9.3e-15   51.7   0.1    2.3  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    4.5e-17   59.0   1.9    2.5e-14   49.9   0.3    2.1  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.1e-16   58.5   0.1    1.8e-12   44.6   0.0    2.2  2  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    3.9e-15   52.3   0.0    5.9e-15   51.7   0.0    1.2  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    1.7e-13   47.4   0.1    1.7e-11   40.7   0.0    2.4  2  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.8e-12   44.7   0.1    2.6e-08   31.0   0.0    2.1  2  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    8.3e-09   31.5   0.2    1.5e-08   30.7   0.2    1.3  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    8.5e-06   23.4   1.0     0.0012   16.4   0.2    2.4  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0082   14.0   0.1       0.24    9.1   0.0    2.2  2  TIGR03351 PhnX-like: phosphonatase-like hydrolase
  ------ inclusion threshold ------
      0.028   12.1   0.8       0.21    9.2   0.5    2.2  1  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal


Domain annotation for each model (and alignments):
>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.3e-11   5.7e-09     554     618 ..       6      69 ..       3      79 .. 0.89
   2 !  187.9   0.1   2.2e-58   5.4e-56     627     862 ..     113     349 ..      77     359 .. 0.90
   3 !   54.9   0.1   3.2e-18   7.7e-16     883     988 ..     693     797 ..     671     815 .] 0.84

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.3e-11
    TIGR01106 554 venlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetvedi 618
                   e+l ++gl+ +    +  v +a+  c sagi+v++ tg+hp +a  ia+ +gii  g+et  +i
  MMETSP1174-20130828|16471_1   6 KEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIH-GEETDLEI 69 
                  57899*************************************************95.66765555 PP

  == domain 2    score: 187.9 bits;  conditional E-value: 2.2e-58
    TIGR01106 627 eqvnkrdakacvvhgsdlkdltseql.deilkehteivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlislaygqigliqalagfltyfvilaengflpskllglrv 862
                  e+ ++  ++ +v+      d++s+ +  e ++ +t+++ ar    +k+ +++ cq +g +v+v gd  +d pal+ ad+gv+mg+ g +++k+aad+i+ d+ f+s++ g++egr +fdnlkk+ia+ + s +p++t f+ + i+++p p+ +  i+++++  +++pa+++aye +e   ++  prn+  dkl+  +li +a +q+g i++ agf++yf+++ ++g+ p  llgl +
  MMETSP1174-20130828|16471_1 113 EKRDPSTSQVTVISHILHSDIDSKGFwSEKMTIFTKLIVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGVHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQVPSPFTVPFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTFIDKLISRKLIIVALLQVGYIETCAGFYAYFTVMDDHGYPPWILLGLAT 349
                  555667778889998889999998763789999******************************************************************9999***********************************************************************************************************************************974 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 3.2e-18
    TIGR01106 883 eqrkiveftchtaffvsivvvqiadliirktrrnsvfqqglknkililglveevalaaflsycpgmevalrllplkltwwlvalpysllifvydevrkliirrrpg 988
                   qr+ +e +++taf+v++v++qia  i  k r ns    g +n  +++g+   ++++ ++sy+   ++ +   +lk++ wl+++p++l+if +de+r++++r +  
  MMETSP1174-20130828|16471_1 693 VQRHSLE-SAQTAFLVAVVLCQIAAAITFKNRWNSFGVYGSNNDYINYGIAIALMITFLVSYSEIGHSLFGAEKLKFSAWLPGIPFALMIFGFDEIRRYLMRLTST 797
                  3455555.579*****************************************************99***********************************98653 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     8e-09   1.9e-06     485     543 ..       5      63 ..       1      92 [. 0.90
   2 !  102.9   0.1   9.5e-33   2.3e-30     564     751 ..     147     336 ..     124     339 .. 0.93
   3 ?   -0.1   0.1      0.12        30     790     851 ..     732     793 ..     692     796 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 8e-09
    TIGR01522 485 tekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavks 543
                   ++ l+++Gl+G+    +  vkea++   ++G+rv++ tG+  ++a+ iar lG+   +
  MMETSP1174-20130828|16471_1   5 AKEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHGE 63 
                  56789*************************************************97654 PP

  == domain 2    score: 102.9 bits;  conditional E-value: 9.5e-33
    TIGR01522 564 kvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkr.kdkiltkdllk.kvlvsaviivvgtllvfvkelqd 751
                  +  + ar+   +k++++k  q+ G vv++ Gd  +d pal lad+Gv+mG +G + ak+aad+i+ d+ f++++  i+eG+ +f+n+k  i f + + +  ++      +l+++ p+    i+++  +++  pa ++  e+ +++ ++ ppr+   dk+++++l+   +l+   i  ++ ++ + + + d
  MMETSP1174-20130828|16471_1 147 TKLIVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGVHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQVPSPFTVPFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTfIDKLISRKLIIvALLQVGYIETCAGFYAYFTVMDD 336
                  556889**************************************************************************************************************************************************96379****99875167778889999999999999988 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.12
    TIGR01522 790 fsnkmflyavgasllGqllvvyvpflqkvfqtealsikdllllllisssvlivdeirklfer 851
                    n   +y ++ +l+   lv y     ++f +e+l  +  l  +  +  ++  deir+++ r
  MMETSP1174-20130828|16471_1 732 SNNDYINYGIAIALMITFLVSYSEIGHSLFGAEKLKFSAWLPGIPFALMIFGFDEIRRYLMR 793
                  4678899**********************************99999999999****999877 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.3e-10   7.9e-08     452     508 ..       6      62 ..       2      76 .. 0.91
   2 !   86.6   0.1     1e-27   2.4e-25     515     689 ..     141     320 ..     121     334 .. 0.87
   3 !    4.9   0.0    0.0049       1.2     734     796 ..     728     790 ..     694     793 .. 0.80

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.3e-10
    TIGR01116 452 esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilss 508
                  +  li+ G++g+    ++ v++ai+ c++aGirv++ tG++  +a  iar +Gi++ 
  MMETSP1174-20130828|16471_1   6 KEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHG 62 
                  56799*************************************************985 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 1e-27
    TIGR01116 515 eeleekkalvfsrvePshklklvel.keldqivamtGdGvndaPalkkadiGiamGs.GtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgiealipv.qllWvnlvtdGlPatalgfnppdkdilkkpprke..deplitgwlflrylviGv 689
                  e+++  + l+++r    +k++l+++ ++l+++v++ Gd  +d Pal+ ad+G++mG  G e ak+a+d+++ d+ f++++  ++eGr +++n+k+ i +++ s + +  + f+  +l + +  +v  +++v +  + lPa a++++++++++++ ppr++  d+ ++ + +++  l +G 
  MMETSP1174-20130828|16471_1 141 EKMTIFTKLIVARCRHADKMNLIKEcQNLGHVVTVMGDRTDDVPALHLADVGVTMGVhGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQVPSPFTVpFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTfiDKLISRKLIIVALLQVGY 320
                  678888899**************864899***************************5499**********************************************************98755551689*****************************9743555555666667777774 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0049
    TIGR01116 734 kippwenkwlvaaiasslalhllilyvpllsalfgvvplslteWllvlkvslPvilvdevlkl 796
                   +  ++n ++   ia +l + +l+ y ++ ++lfg   l+++ Wl  +  +l +   de+ ++
  MMETSP1174-20130828|16471_1 728 GVYGSNNDYINYGIAIALMITFLVSYSEIGHSLFGAEKLKFSAWLPGIPFALMIFGFDEIRRY 790
                  4556799**************************************999999998888888665 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.2e-07    0.0001     530     592 ..       6      68 ..       2      77 .. 0.91
   2 !   95.5   0.1   2.1e-30   5.1e-28     591     772 ..     133     317 ..     118     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.2e-07
    TIGR01517 530 nkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelale 592
                  ++gl+l +++Gi    +  v+ea++ c+ aGi v + tG+    a  iar+ gi++ +e+ le
  MMETSP1174-20130828|16471_1   6 KEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHGEETDLE 68 
                  5799***************************************************98887666 PP

  == domain 2    score: 95.5 bits;  conditional E-value: 2.1e-30
    TIGR01517 591 legkef..rkdkilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigr.kaplisrsmwknilgq 772
                  ++ k f   k++i+ kl  +aR +  Dk  L++  ++lg+vv v GD t+D PaL+ladvG++mg+ G e ak+a+Dii+ d+ f+s++  ++ GR + d++kk + f ++  +   +  f+  ++   sp t   +++v + ++ L a+a+a e  +e+ ++ +P+      lisr+++   l q
  MMETSP1174-20130828|16471_1 133 IDSKGFwsEKMTIFTKLI-VARCRHADKMNLIKeCQNLGHVVTVMGDRTDDVPALHLADVGVTMGVHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQVPSPFTVPFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTfIDKLISRKLIIVALLQ 317
                  555666224667999995.5********998853899***********************************************************************876656666666666777889***********************************9986523567777665544444 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.7e-10   4.2e-08     577     634 ..       5      62 ..       2      90 .. 0.88
   2 !   81.1   0.6   3.3e-26     8e-24     668     858 ..     147     334 ..      81     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.7e-10
    TIGR01523 577 aesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilpt 634
                  a+  l +l+l+gi    +   k a++ +h agirv + tg+++ +a  iar++gi+  
  MMETSP1174-20130828|16471_1   5 AKEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHG 62 
                  677899*************************************************975 PP

  == domain 2    score: 81.1 bits;  conditional E-value: 3.3e-26
    TIGR01523 668 lplviarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvg..iftkelivdtlvygiiltvvslasfvvil 858
                    l++arc    k+++i+      + v++ gd  +d p+l+ a+vg++mg+ g + ak+a+di++ d+ f+s+++ ++egrr++dn++k +  ++v+ + +   +    +++        p++   +++++     +pam +  e ++   ++ +p ++ +   i +k +iv +l  g+i t + + ++ +++
  MMETSP1174-20130828|16471_1 147 TKLIVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGVHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQ-----VPSPFTVPFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTFIDklISRKLIIVALLQVGYIETCAGFYAYFTVM 334
                  3699********************************************************************************************9999987665555544.....334555556889999999**********************9977543777888999999****9999998887776 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.7e-10   1.4e-07     316     366 ..      10      60 ..       6      62 .. 0.96
   2 !   66.8   0.1   1.1e-21   2.6e-19     365     476 ..     150     267 ..     143     269 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.7e-10
    TIGR01494 316 ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                  +llGl+++  + ++ vke+i+++++agi+v++ TG ++  A+ ia+ lg++
  MMETSP1174-20130828|16471_1  10 ILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGII 60 
                  589*********************************************986 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 1.1e-21
    TIGR01494 365 lfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvlnllltslpal 476
                  ++ar+   +K ++++ +++ g+vv + GD + D+pAL  AdVG+ ++      Ak aadi++ d+++s++++ ++eGr++++++kk i +++ + + ++  ++++++l++  + ++ +
  MMETSP1174-20130828|16471_1 150 IVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGvhgeetAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQVPSPFTVPF 267
                  79********************************************76666669******************************************************9998877665 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.4e-06   0.00057     378     427 ..      11      60 ..       3      68 .. 0.91
   2 !   52.9   0.0   2.5e-17   6.1e-15     424     524 ..     143     244 ..     139     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.4e-06
    TIGR01525 378 llglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgii 427
                  llgli +  + ++ +keai++ +++gi+vvl tG + +aa  +A++lgii
  MMETSP1174-20130828|16471_1  11 LLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGII 60 
                  789999****************9999**********************95 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 2.5e-17
    TIGR01525 424 lgi.idevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvyn 524
                  + i  + +va ++ +dK++ +k+ q+  g++v + GD   D pAL  AdvG+ mg +g ++a++aAD+++ +++ ss+ + i+  r+++ ++k+ +++ +v +
  MMETSP1174-20130828|16471_1 143 MTIfTKLIVARCRHADKMNLIKECQNL-GHVVTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSI 244
                  56655667899999***********65.557***************************************************************999988765 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.7e-05     0.011     427     481 ..       5      59 ..       1      79 [. 0.91
   2 !   51.7   0.1   3.8e-17   9.3e-15     523     652 ..     159     291 ..     152     352 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-05
    TIGR01647 427 ekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlgl 481
                  +k+   llgl+ +    ++  ke+i+ +++ g++v + tG+h a a  +ar lg+
  MMETSP1174-20130828|16471_1   5 AKEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGI 59 
                  56677899*********************************************97 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 3.8e-17
    TIGR01647 523 kyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviY.rvaltlrivvflallililkfklpvllvvllall.nDgtiltiakDrvkps 652
                  k ++++  q+ gh+v++ GD  +D+PaL  AdvG+ +     + A+ aaDi++ +  +s +++ i+e R++F+ +k+ +++  v++  +   f++  il     ++v  ++++ ++ n  + +++a++  +++
  MMETSP1174-20130828|16471_1 159 KMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFvMVSIMPQFTAFFTYYILQVPSPFTVPFIIFVQFFvNMLPAMAMAYESTEEK 291
                  88999*****************************9865245689*******************************9887762578888999999999999999999888888876537889******988765 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00034     0.081     501     575 ..       6      90 ..       2     100 .. 0.76
   2 !   49.9   0.3     1e-16   2.5e-14     579     725 ..     147     295 ..      85     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00034
    TIGR01524 501 eeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi..........dandvllGadieelsdeelaa 575
                  +e li+ G+++     k+  k+ai a +++gi v + tG+ +  +  i +++Gi            n++l+   ie++  +ela 
  MMETSP1174-20130828|16471_1   6 KEGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIihgeetdleiHENNILIDYLIEAIGMKELAD 90 
                  5679********************************************9999972222211111334556666666666666655 PP

  == domain 2    score: 49.9 bits;  conditional E-value: 1e-16
    TIGR01524 579 kravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvds.aadiakeasdiillekslmvleegvieGretfgnilkylkmtass...nfgnvfsvlvasafipflpmlalhlliqnllydvsqlalpfdkvdkeflkk 725
                   + + ar    +k  +++  ++ Gh+v  +Gd  +d pal  advG+++     + ak+a+dii+ +  +  l +g+ eGr+ f n+ k +     s    f+  f+  +     pf   +++ +++q ++  +  +a+ ++  +++ ++ 
  MMETSP1174-20130828|16471_1 147 TKLIVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGVhGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSimpQFTAFFTYYILQVPSPFT--VPFIIFVQFFVNMLPAMAMAYESTEEKTFNS 295
                  2334455566789999*******************************9986146799******************************9987765544223788888777666666663..3444555555555666666666666655555 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.3e-05     0.018     316     364 ..      11      58 ..       5      65 .. 0.91
   2 !   44.6   0.0   7.4e-15   1.8e-12     367     458 ..     150     245 ..     147     262 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.3e-05
    TIGR01512 316 llglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                  llgli +  + ++ ++eai++ +++g+ ++vl tG + aaa ++a+ lG
  MMETSP1174-20130828|16471_1  11 LLGLIGICHQYKHFVKEAIHACHSAGI-RVVLTTGEHPAAAIYIARDLG 58 
                  579999999*****************6.88******************9 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 7.4e-15
    TIGR01512 367 vhaellPedKveivkelke....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiil 458
                  ++a ++  dK++ +ke ++    v ++GD   D paL  Advg+ mG++g ++a ++AD+++ +++ s+l + i+ +r++  ++k+ +++ +  i+
  MMETSP1174-20130828|16471_1 150 IVARCRHADKMNLIKECQNlghvVTVMGDRTDDVPALHLADVGVTMGVHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIM 245
                  57889999********99733335688***********************************************************9999887765 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.5e-17   5.9e-15     649     939 ..      11     312 ..       5     344 .. 0.70

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 2.5e-17
    TIGR01657 649 flGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeepekgksaqikfeskde....kiastkveqpvkekkds..lesl.lasryslalsGkalavllekskellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLs...eaeAsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkg..sklgdgQfltidllliavvalllsrskplkkLskerpssnllsvylllsvll 939
                  +lGl+ +  + k+  ke i++ + a irvv+ tG  +  a+ +ar++gi++ ++t + ++  +    ++    +  k+         ++ +q+    +ds  +e+    +++   +s   ++ +  k     k+ +    + AR    +K +l++++++l+ +v   GD + D+ AL  AdvG+ +    e  A  aa  +   +  s   + i+eGR    +  +   +++   + qf ++++ y+ +  s ++   + +++ ++ ++ a+++++++  +k  +++p ++ + + +  ++++
  MMETSP1174-20130828|16471_1  11 LLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHGEETDLEIHE-NNILIDYLIEAIGMKELadrvAYVAKQLKQDEGIVRDSgmCEKRdPSTSQVTVISHILHSDIDSKGFWSEKMTIFTKLIVARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGvhgEETAKDAADIIVDDNHFSSLIDGIQEGRRLFDNLKKAIAFVMVSIMPQFTAFFTYYILQvpSPFTVPFIIFVQFFVNMLPAMAMAYESTEEKTFNSPPRNTFIDKLISRKLII 312
                  788888888999999*************************************976555553.33344433333333333556644455555555555555533333033333444455555556655545556667777799*******************************************95333778999**********************8777766666665555555666666655544123566666778888888888888888887777777776665544443333333 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0093       2.3     437     485 ..      11      59 ..       6      63 .. 0.91
   2 !   40.7   0.0   7.2e-14   1.7e-11     489     567 ..     151     230 ..     147     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0093
    TIGR01497 437 iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                  ++G+i +    k  +ke ++     Gi+ ++ tG+ + +a  ia++ G+
  MMETSP1174-20130828|16471_1  11 LLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGI 59 
                  57888888999999******************************99986 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 7.2e-14
    TIGR01497 489 iaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqll 567
                  +a ++  dk+++ik+ q+ G++v++ Gd t+d pal  advgv+m   G ++ak+aa+++  d + + li+ ++ G++l+
  MMETSP1174-20130828|16471_1 151 VARCRHADKMNLIKECQNLGHVVTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVDDNHFSSLIDGIQEGRRLF 230
                  799******************************************73699*********999*********999999986 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   9.1e-05     0.022     361     408 ..      12      59 ..       4      67 .. 0.89
   2 !   31.0   0.0   1.1e-10   2.6e-08     411     495 ..     151     239 ..     144     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.1e-05
    TIGR01511 361 aavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                  ++++ +  + k+ +ke+i+a +++gi+vvl tG    aa  +A+ lgi
  MMETSP1174-20130828|16471_1  12 LGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGI 59 
                  5667777889999**********************************9 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 1.1e-10
    TIGR01511 411 laevlPedKaakvkelqe..kkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvll.ndlkdvataielsrktlkkikqNllw 495
                  +a  + +dK++++ke q+  ++v ++GD + D paL  advg+++g +g + a++aad+++  n+ +++++ i+  r+ + ++k+ +++
  MMETSP1174-20130828|16471_1 151 VARCRHADKMNLIKECQNlgHVVTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVDdNHFSSLIDGIQEGRRLFDNLKKAIAF 239
                  6777889*********98557999*********************8579**********986245677777777777666666665544 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   6.1e-11   1.5e-08     619     844 ..       7     246 ..       2     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 6.1e-11
    TIGR01652 619 keLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseemellvikees...............ldaleaveaaikkeleeseeeleelkk....keklalviDGksLklaLkeeleke.flelalk.ckavlcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGv..GisGkEGkqAvmasDfaigqFrfLekLl..LvHGrwsYkRisklilyffyknli 844
                  + L+llg  +i  + ++ V+e+i+  ++Agi++ + TG++   Ai i+    +++ e + l i+e++                d+++ v +++k+     e  ++++       ++++ v   + ++ +L+++++++ f +  ++  + ++  R+    K +++k  ++ l +v+  +gd + DV  +  AdvGv  G++G+E   A  a+D+ +   +++++L+  +  Gr  +  + k+i +++   + 
  MMETSP1174-20130828|16471_1   7 EGLILLGLIGICHQYKHFVKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHGEETDLEIHENNilidylieaigmkelADRVAYVAKQLKQ----DEGIVRDSGMcekrDPSTSQV---TVISHILHSDIDSKgFWSEKMTiFTKLIVARCRHADKMNLIKECQN-LGHVVTVMGDRTDDVPALHLADVGVtmGVHGEE--TAKDAADIIVDD-NHFSSLIdgIQEGRRLFDNLKKAIAFVMVSIMP 246
                  579************************************************************99999999998887754444444444444443....333333333232233333333...4556677777654414443333145577788887777666665555.5788889*****************955777777..588899987765.444555544567888888888888877765544 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.013         3      21      54 ..      25      58 ..      19      98 .. 0.87
   2 !   16.4   0.2   4.8e-06    0.0012     207     248 ..     173     215 ..     161     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.013
    TIGR00099 21 tkealaklrekGikvvlaTGRsykevkeilkelg 54
                 +kea+ +  + Gi+vvl TG ++ ++  i ++lg
  MMETSP1174-20130828|16471_1 25 VKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLG 58
                 799******************9888777776665 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.8e-06
    TIGR00099 207 viaiGDseNDieMleaagvgvamg.naneelkaladyvtdsnd 248
                  v + GD   D++ l  a+vgv+mg  ++e++k++ad ++d+n 
  MMETSP1174-20130828|16471_1 173 VTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVDDNH 215
                  6789********************456889*********9986 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     0.001      0.24      92     134 ..      25      67 ..      19      74 .. 0.87
   2 ?    2.4   0.1      0.12        29     166     192 ..     173     199 ..     154     230 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.001
    TIGR03351  92 veeairdLrskGikvaLttGfdrevaeklleklgWsvgedvDa 134
                  v+eai + +s Gi+v+LttG + + a  + + lg   ge+ D 
  MMETSP1174-20130828|16471_1  25 VKEAIHACHSAGIRVVLTTGEHPAAAIYIARDLGIIHGEETDL 67 
                  79******************99999999999999888888775 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.12
    TIGR03351 166 vlvaGDtanDleaginagatlvvGvlt 192
                  v v+GD + D+ a + a +++++Gv  
  MMETSP1174-20130828|16471_1 173 VTVMGDRTDDVPALHLADVGVTMGVHG 199
                  6799**********9999999999853 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5   0.00088      0.21      25     204 ..      27     212 ..      21     217 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00088
    TIGR01487  25 eairklekkGikvvlvtGne....vkfvealavligv.sgavvaEnGgvvlykkedielankekeslldevkkkie...lrdllkneys..raslvv...dregkdvdevrkiakerglevvasgyavhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvava.nAddelKeiaDlvte 204
                  eai   ++ Gi+vvl tG+     + +++ l ++ g  ++  + En  ++ y  e i + +  +++  +  + k+    +rd    e +    s+v+    +  +d+d    + +++ +  +     + +++     ++ + k ++ lG     v ++GD   D+++ ++a+ +v+++   ++  K++aD++ +
  MMETSP1174-20130828|16471_1  27 EAIHACHSAGIRVVLTTGEHpaaaIYIARDLGIIHGEeTDLEIHENNILIDYLIEAIGMKELADRVAYVAKQLKQDegiVRDSGMCEKRdpSTSQVTvisHILHSDIDSKGFWSEKMTIFTK-----LIVARCRHADKMNLIKECQNLGH---VVTVMGDRTDDVPALHLADVGVTMGvHGEETAKDAADIIVD 212
                  77888888888888888875221144555555544432456688888888887666555555444433332222220002222222221222222220002233444444444444444433.....33343333334455555666663...5799*******************984578889*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.97u 0.19s 00:00:01.15 Elapsed: 00:00:01.48
# Mc/sec: 726.83
//
Query:       MMETSP1174-20130828|16478_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087   10.9   2.1        0.1   10.7   1.5    1.0  1  TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase


Domain annotation for each model (and alignments):
>> TIGR03188  histidine_hisI: phosphoribosyl-ATP diphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.5   2.5e-05       0.1       1      62 [.       5      66 ..       5      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.5e-05
    TIGR03188  1 leeLeevieerkeedpeeSytakllekgedkilkKv..gEEavEviiaaknedkeelveEaaDl 62
                 l++Le+v+++ +++++e+  t+k l k  ++ ++Kv  +EE   v  +a+ ++++ l++E  D 
  MMETSP1174-20130828|16478_1  5 LQDLEQVVKQINDNKSENKDTQKHLPK--KARAAKVvkSEEPKKVQNEAQRSKSDDLTWEERDT 66
                 799********************9999..444445424699999*99999999999****8886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                      257  (0.0626524); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 288.73
//
Query:       MMETSP1174-20130828|16479_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 402.41
//
Query:       MMETSP1174-20130828|16481_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-14   48.2  47.9    7.9e-09   31.6  26.3    3.0  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    3.9e-11   39.2  41.6    5.4e-05   18.9  18.4    3.0  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00038   16.3  31.8    0.00054   15.8  22.0    1.1  1  TIGR00618 sbcc: exonuclease SbcC
  ------ inclusion threshold ------
      0.023   10.8   1.8      0.027   10.5   1.2    1.2  1  TIGR00833 actII: transport protein
       0.69    6.9  10.7       0.35    7.8   3.7    2.6  3  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
        1.8    4.0  31.0        2.9    3.3  20.6    1.9  2  TIGR02680 TIGR02680: TIGR02680 family protein
        5.5    4.6  15.8         11    3.7  10.9    1.5  1  TIGR03513 GldL_gliding: gliding motility-associated protein GldL


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  26.3   1.3e-11   7.9e-09     258     454 ..      50     236 ..      36     247 .. 0.68
   2 !    4.5   0.8     0.002       1.2     310     403 ..     268     361 ..     255     388 .. 0.43
   3 !   17.5   0.0   2.5e-07   0.00015    1090    1151 ..     388     452 ..     381     457 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.3e-11
    TIGR02168 258 leaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleel 454
                  ++a+l++l+ e++el+++k+e e+++++ q+el++ +   +rl+q+ +++ ++ ++++++ ++l    +e+e +k+e+ +++a++e++l e+++el sle++l+e       + ++l+e+ + l +l++++++ ++++++ln+e e +e++l+++ +++++ +q  e +++kl++ e+++++ +++lee++++l+++
  MMETSP1174-20130828|16481_1  50 ARAQLEKLNVEYAELETQKREIEQRFKATQAELKKQSMGFNRLDQRYKKATQSSRAVQRQHNKLR---QEQEDSKTEAPDDTAAIEDDLVEFRQELRSLEEKLAE-------AVRALSEKATSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQTMLDKA 236
                  45677777777777777777777777777777777777777777777777777776766666665...5566666677777777777777777777777777777.......6666666666666666666666666666666666666666666666666666666666666666777777777777776666654 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.002
    TIGR02168 310 rleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaele 403
                  r ++l++++e+  ++ + +  + ++ + +l e+++ l++ k  l+ + ++++ ++a+l+e +sr+++l++ + ++ + +++   q++  + +++
  MMETSP1174-20130828|16481_1 268 RINKLKEKQEKGFANKKGDLGDIDKCRMKLLEVQKALADKKGYLQVTFENINLLQADLKERKSRWKDLRRFIANQTNMFFDQYLQKNGKSGRVN 361
                  3333333333333333333333333333333333333333333333333333333333335555555555555555555555555554444443 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 2.5e-07
    TIGR02168 1090 slLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkef...skktQFIviT 1151
                   sl+SGGE++ + +aLl+++ +    Pf i+DE d   D    ++ ++ l ++    ++ QFI+iT
  MMETSP1174-20130828|16481_1  388 SLFSGGERSYVTMALLLSLGECIECPFRIMDEFDVFMDAISRRKAMENLVQVgvqMRHRQFIFIT 452 
                   79********************************9998766555555444431112445888887 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   7.4   0.00023      0.13     419     492 ..      50     123 ..      32     129 .. 0.48
   2 !   18.9  18.4   9.2e-08   5.4e-05     668     898 ..     119     345 ..     114     390 .. 0.80
   3 !   16.1   0.0   6.5e-07   0.00038    1076    1135 ..     390     452 ..     368     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00023
    TIGR02169 419 leeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselere 492
                  ++++l++l+ e +++e ++ e+e++ ++ ++e+kk+    ++l +  +ka ++ r+ + + +kl +e+++++ e
  MMETSP1174-20130828|16481_1  50 ARAQLEKLNVEYAELETQKREIEQRFKATQAELKKQSMGFNRLDQRYKKATQSSRAVQRQHNKLRQEQEDSKTE 123
                  33444444444444444444444444444444444444444444444444444444444444444444444333 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 9.2e-08
    TIGR02169 668 lvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleae 898
                    +++ ++  + ++++l e  +el sl ++l+++ ++l+e+  +ls+ e+k+++ ++ +++l+ee+e  +++l+e++++ s+ ++ le ++++l + e+++++ e++l++ +  l++ +++      +e+  e++ +  +v++ ++ ++   ++l++++ ek +++  ++    +i+++  +  e++k++++ k+ l+ + e+++ l+a ++e +++ kdL++ + +  + 
  MMETSP1174-20130828|16481_1 119 DSKTEAPDDTAAIEDDLVEFRQELRSLEEKLAEAVRALSEKATSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQTMLDKAYDNAVVYTHRELGPEAD-VPIQVAKSKGYVQGRINKLKEKQ-EKGFAN--KKGDLGDIDKCRMKLLEVQKALADKKGYLQVTFENINLLQADLKERKSRWKDLRRFIANQTNM 345
                  456677788888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998888888888764.66666666666665555555555.455554..456678899999999999999999999999999999999999999999999999988887665 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 6.5e-07
    TIGR02169 1076 mSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNver.vaklike..kakeaQfivvs 1135
                    SGGE+s + ++++  + +    pf ++DE D+f+D++   + + +l++   + ++ Qfi ++
  MMETSP1174-20130828|16481_1  390 FSGGERSYVTMALLLSLGECIECPFRIMDEFDVFMDAISRRKaMENLVQVgvQMRHRQFIFIT 452 
                   5************************************98654266676642266778999887 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  22.0   9.1e-07   0.00054     615     972 ..      50     410 ..      37     415 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.1e-07
    TIGR00618 615 qheeleklqeeldkqevaleeqqieqelalkltalealeltLaqeevrekllsvrelkkeklesrqaklkklqskkeqltyikeeLeqkqellreletkveelsrefeelenasssakseleaeeealnqslkeleeqaktklkareeeqerkseevvvelqtgaeleelkaelefkrreleesvqelkeleaeieqelpededileleqeklvqeeeqlkskleeks...........kklgeikrqlkkyeetkkqleqltqkqakiiqlsekleglnsikvqfegdklrkflaeitlqkvvrlanqseirfhgryllkskaarkeklkallvveaatdsvRpvet..lSGGEtFlaslslaLaladll 972
                   +++lekl+ e +++e +  e +   +  ++++ ++ +  + + ++ +++  s+r  + +  + rq +++   +     + i + L    + lr+le+k+ e  r   e      +  s+lea+ +  +  +++l+e+a+    ++ e+ ++ks++  +++   ++l++ ++ +   +r+lees++ l +   +   +   +++      +++++ +  ++ ++++++             lg+i++   k+ e +k l+++ +   +++ +  +l   + ++ + + + lr+f+a+ t     +   q+ ++  gr+ +++++     +  ++ ++ +++++    t  +SGGE   + ++l L l + +
  MMETSP1174-20130828|16481_1  50 ARAQLEKLNVEYAELETQKREIEQRFKATQAELKKQSMGFNRLDQRYKKATQSSRAVQRQHNKLRQEQEDSKTEAPDDTAAIEDDLVEFRQELRSLEEKLAEAVRALSEKA----TSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQTMLDKAYDNAVVYTHRELGPEADVPIQVAKSKGYVQGRINKLKekqekgfankkGDLGDIDKCRMKLLEVQKALADK-KGYLQVTFENINLLQADLKERKSRWKDLRRFIANQTNM-FFDQYLQKNGK-SGRVNFNHNEE---TMTFTVCMNNQDSQTQSEVTslFSGGERSYVTMALLLSLGECI 410
                  689999**999998887666555555566777778888888888999999999999999999999999999999999********************************99....77899******************99999999999999************************************88876655555544444433334444444444443333332225556665567899999999999999999999.88888888888888888888888888899998765432.33333334444.68888877665...89999999999977765433337*************9998776 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   4.6e-05     0.027     576     672 ..     123     218 ..      27     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.6e-05
    TIGR00833 576 qaaddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmresaagvadllneLsDyvktlgkvlgeaagvdlyippeilkddefk 672
                  +a dd  ++   l +  ++l+    +l++a++ +s    +l  l++k+ + +++++ + ++ + + D+++++ + + + +++    +++ l+++e +
  MMETSP1174-20130828|16481_1 123 EAPDDTAAIEDDLVEFRQELRSLEEKLAEAVRALSEKATSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQIL-ERARQKLSNSEQR 218
                  56677778888888888888888888999999999999999999999999999999999998888999999888888777776.7777777777655 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.2     0.037        22     173     285 ..      54     166 ..      50     170 .. 0.72
   2 ?    7.8   3.7    0.0006      0.35     173     274 ..     135     236 ..     109     244 .. 0.72
   3 ?    0.5   0.0       0.1        59     156     187 ..     298     329 ..     278     372 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.037
    TIGR00996 173 leglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspeleqlLkll 285
                  le+l+   a+l ++ + i++ ++ +++ l+ ++   ++ld+  +++ + +++++ +  +L++  ++ +  + + ++++++   +++q+l++L+  l+++v++  e +++L++l
  MMETSP1174-20130828|16481_1  54 LEKLNVEYAELETQKREIEQRFKATQAELKKQSMGFNRLDQRYKKATQSSRAVQRQHNKLRQEQEDSKTEAPDDTAAIEDDLVEFRQELRSLEEKLAEAVRALSEKATSLSNL 166
                  56666667778888888888888888888888888888888888888888888888888888888777777777777777777777777777777777777766666666555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0006
    TIGR00996 173 leglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdy 274
                  l + +q ++ l e++    +++   ++ l+ l ++ ++++r++++l++ +++++d+ +++ +  ++ s+ ++ +r+ l+++++ +a+  +nL+  +t+l+++
  MMETSP1174-20130828|16481_1 135 LVEFRQELRSLEEKLAEAVRALSEKATSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQTMLDKA 236
                  334444444455555555555555555566667777888888888888888888888888888888899999999999999999999999999888888876 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.1
    TIGR00996 156 nalaealaGqgpqlrelleglaqltaalnerd 187
                   ++ +ala++ + l+ + e+ + l a+l+er 
  MMETSP1174-20130828|16481_1 298 LEVQKALADKKGYLQVTFENINLLQADLKERK 329
                  34445555555555555555555555555443 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  20.6     0.005       2.9     236     422 ..      76     264 ..      54     345 .. 0.67
   2 ?   -2.5   0.0      0.28   1.7e+02    1228    1257 ..     370     396 ..     369     404 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.005
    TIGR02680 236 rdeLerleaeerAlrnflqryreYar..talrrratelrsAqkqldels.rdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelga 422
                  ++  ++l ++  + +++ qry++  +  +a++r+  +lr+ q+  ++ +  d  + +d+l + r+e+r+l++++ ++ ++++  +t l +L+++   +  ++ +++++eae  ++++ e   +  +  + +e++r++l ++++r+++ e++l++++  l ++  +a + ++ +  p a  + q++++ g 
  MMETSP1174-20130828|16481_1  76 KATQAELKKQSMGFNRLDQRYKKATQssRAVQRQHNKLRQEQEDSKTEApDDTAAIEDDLVEFRQELRSLEEKLAEAVRALSEKATSLSNLEAKM-KKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQTMLDKAYDNAVVYTHRELGPEADVPIQVAKSKGY 264
                  34445566666667777777776443114455666666666655544330334444556666666666666666666666666666666665432.2334667777778888888888888888888888999999999999999999999999999888888888888887777777777777776665 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.28
    TIGR02680 1228 kFtvyleraqegqwrpltkrrgplSgGEka 1257
                   +Ftv ++++ ++q +        +SgGE+ 
  MMETSP1174-20130828|16481_1  370 TFTVCMNNQ-DSQTQSEV--TSLFSGGERS 396 
                   799966655.66666655..589*****97 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.9     0.018        11      62     224 ..      61     231 ..      49     242 .. 0.65

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.018
    TIGR03513  62 yPeLaeknkrkke..aaaaeepeaarllsqkLdamlkeakvdaellaslgngikneekisdlseai.......dklaeatealegaaktlakmtdsyakqkedqeglrldaqkYieqleklaknleaLNeiYeiqlkgaskqikalneiyaglasirdnyddaaedseslke 224
                  y eL+ +++  ++   a++ e + +++  ++Ld+  k+a   +  ++++ n +++ e+ +  +ea        d l e+ ++l+   + la+ + ++++++ + + l  + +k++  ++kl+++ e + +  +  + + s++ + l++  ++l++  + ++d  ++ e+ ++
  MMETSP1174-20130828|16481_1  61 YAELETQKREIEQrfKATQAELKKQSMGFNRLDQRYKKATQSSRAVQRQHNKLRQ-EQEDSKTEAPddtaaieDDLVEFRQELRSLEEKLAEAVRALSEKATSLSNLEAKMKKFQRTVQKLNEEAEVMEDQLHEIMAEKSQRSQILERARQKLSNSEQRVADGERNLEESQT 231
                  556665553333301344455667888899************************6.33333344430000112456677777777777777777777777777777777777777777777777766654444445555666777777777788877777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       565  (0.137738); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.01u 0.15s 00:00:01.15 Elapsed: 00:00:01.62
# Mc/sec: 393.52
//
Query:       MMETSP1174-20130828|16482_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 541.61
//
Query:       MMETSP1174-20130828|16483_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   12.3   0.0     0.0075   12.0   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.034   11.5   0.0       0.16    9.3   0.0    1.8  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.7e-06    0.0075     439     496 ..      25      85 ..      22      98 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.7e-06
    TIGR02917 439 lsyLrsgefdkalaaakklekkqpdnaslynllgaiylg...kkdlakAreafekALkiep 496
                  ++ L +g + k+l  ++  +k++p++a ++  +g  + +   ++ l++A e++ +AL+++p
  MMETSP1174-20130828|16483_1  25 MKNLMRGASHKVLELVEPALKQYPNDAMMWTVRGKGLYNpdsREALQQALESLDNALSLNP 85 
                  5667777788888888888888888888888888777763324456677777777888777 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.064   1.3e+02      42      72 ..      28      58 ..      25      63 .. 0.83
   2 ?    9.3   0.0   7.9e-05      0.16      44      80 ..      67     103 ..      66     117 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.064
    TIGR02521 42 leqgdlekAkenlekAleldpkdadanlalA 72
                 l +g+ +k  e +e Al++ p+da  + +++
  MMETSP1174-20130828|16483_1 28 LMRGASHKVLELVEPALKQYPNDAMMWTVRG 58
                 567888888999999*****99999988775 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 7.9e-05
    TIGR02521  44 qgdlekAkenlekAleldpkdadanlalAlyyqqlge 80 
                  +++l++A e+l++Al l+p ++d+  +  +++++lg 
  MMETSP1174-20130828|16483_1  67 REALQQALESLDNALSLNPLSNDPMIMKCIVLERLGY 103
                  5789**************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.55
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|16488_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-40  134.5   0.0    1.1e-39  134.2   0.0    1.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    7.4e-34  115.3   0.1    1.6e-33  114.2   0.0    1.5  1  TIGR01136 cysKM: cysteine synthases
      8e-34  115.1   0.0    1.2e-33  114.5   0.0    1.2  1  TIGR01139 cysK: cysteine synthase A
    1.5e-29  101.2   0.1    1.2e-17   62.3   0.0    2.0  2  TIGR01138 cysM: cysteine synthase B
      3e-26   90.0   0.1    3.6e-25   86.5   0.1    1.9  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.7e-08   31.0   0.0      4e-08   30.4   0.0    1.2  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    4.2e-08   30.4   0.2    5.6e-08   29.9   0.1    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
      7e-07   26.2   0.0    9.1e-07   25.8   0.0    1.2  1  TIGR02079 THD1: threonine dehydratase
    0.00033   17.2   0.1    0.00038   17.0   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
     0.0009   16.2   1.5      0.012   12.5   0.0    2.0  2  TIGR00263 trpB: tryptophan synthase, beta subunit
  ------ inclusion threshold ------
       0.01   13.0   0.0      0.015   12.5   0.0    1.2  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   2.9e-42   1.1e-39     117     317 ..       6     227 ..       1     253 [. 0.82

  Alignments for each domain:
  == domain 1    score: 134.2 bits;  conditional E-value: 2.9e-42
    TIGR01137 117 aaafdsPesyigvakrlekeip....g.....avildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklk.ekedkvrivGadPeGsila.........epeelnk...tektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkflndeWlkd 317
                   aa+ +P+ y++va+rl  +++    g     a   dq++ +sn  ah d+tg ei++q++gk+da+v ++GtGGti+G+++ lk    +kvriv adP Gs l           pe+ +k    ++ d   eGiG d +   l    +d+ ++++d+e++++a  l+++egl+vg ss + +vaal+++  +l  + v+v +l ds++ + t+f n  ++++
  MMETSP1174-20130828|16488_1   6 PAAIANPDHYVNVARRLALDLNreagGgggvcALFTDQFETPSNKRAHVDGTGAEIWAQTKGKVDAFVMSAGTGGTIAGVSQVLKaRTGGKVRIVLADPPGSSLYnlvkhgvcwAPEQAEKrvrKHRYDSVAEGIGLDRVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSM-ALPPGSVVVTVLCDSGQRHQTRFWNPGFVAE 227
                  467789**********86555422223444446789*************************************************666789**********8543122222222466555411144445568**********************************************************9.9999*9*****************99888764 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   4.2e-36   1.6e-33     134     293 ..      39     215 ..       9     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 4.2e-36
    TIGR01136 134 vllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkp.nvkivavePaespvlseg.............kpgphki....qgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerY 293
                  ++ +qfe p+N++aH   tg+Ei+++t+gk+dafv + GtgGti Gv++vlk ++  +v+iv ++P  s++                 +  +h+     +gig + +   l    +d+ ++v+d++a+++a+ l+++eg++vG Ss  +++aal+ +  l  +++++v++l+d+g+r 
  MMETSP1174-20130828|16488_1  39 LFTDQFETPSNKRAHVDGTGAEIWAQTKGKVDAFVMSAGTGGTIAGVSQVLKARTGgKVRIVLADPPGSSLYNLVkhgvcwapeqaekRVRKHRYdsvaEGIGLDRVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMALP-PGSVVVTVLCDSGQRH 215
                  5689*************************************************9988*********999874433557999999988745556541111567777788899999*********************************************99.9*************96 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   3.2e-36   1.2e-33     134     292 ..      39     215 ..      23     219 .. 0.91

  Alignments for each domain:
  == domain 1    score: 114.5 bits;  conditional E-value: 3.2e-36
    TIGR01139 134 lllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkp.dikvvavePaespvlsgg.............kpgphk....iqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerY 292
                  l++ qfe p+n+++h   t++ei+ +++gk+dafv + GtGGti+Gv++vlk  ++ ++++v ++P  s++ +               +  +h+      Gig + +   L    id+ ++vsd+ea+++a+ l+++eG++vG ss  +++aal+ +  l ++ ++v++l+d+g+r+
  MMETSP1174-20130828|16488_1  39 LFTDQFETPSNKRAHVDGTGAEIWAQTKGKVDAFVMSAGTGGTIAGVSQVLKARTGgKVRIVLADPPGSSLYNLVkhgvcwapeqaekRVRKHRydsvAEGIGLDRVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMALPPGSVVVTVLCDSGQRH 215
                  5789************************************************99988**********998865545569****999984455552222579**************************************************************************97 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   3.1e-20   1.2e-17     115     200 ..      14     106 ..       7     125 .. 0.83
   2 !   37.1   0.0   1.4e-12   5.4e-10     222     285 ..     152     216 ..     147     219 .. 0.93

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 3.1e-20
    TIGR01138 115 eGmeGardlarelvrkgeek......lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqn.pavqivGlqpae 200
                  + ++ ar la +l r+  +       + dqf+ p+n +ah   tG eiw qtkG++  fv s Gt+Gti Gvs+ lk ++  +v+iv   p  
  MMETSP1174-20130828|16488_1  14 HYVNVARRLALDLNREAGGGggvcalFTDQFETPSNKRAHVDGTGAEIWAQTKGKVDAFVMSAGTGGTIAGVSQVLKARTgGKVRIVLADPPG 106
                  5567789999999988766556676678*************************************************8762578888777754 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 1.4e-12
    TIGR01138 222 slvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdryl 285
                  + +d  v v  ++a ++a  l ++eg+fvG ss   ++aalr + +l+  +vvv+++cd G+r+ 
  MMETSP1174-20130828|16488_1 152 AAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMALPPgSVVVTVLCDSGQRHQ 216
                  5799*******************************************9868***********975 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   9.8e-28   3.6e-25     138     300 ..      39     221 ..      36     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 9.8e-28
    TIGR03945 138 vwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrek.spevkvvavDavGSvifg..........gepgk..Rl......ipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldtvYd 300
                  +++ Q++ ++n +ah+ +t++ei ++ k +vd ++++++t+Gt+aGv++ l+ +   +v++v  D  GS +++          ++++k  R+        G+G  +v   l+ + id+ v+vs++e++  ++ l+++eg+++G Ss+  ++a+ ++   +++gs vv++l+D G+r     ++
  MMETSP1174-20130828|16488_1  39 LFTDQFETPSNKRAHVDGTGAEIWAQTKgKVDAFVMSAGTGGTIAGVSQVLKARtGGKVRIVLADPPGSSLYNlvkhgvcwapEQAEKrvRKhrydsvAEGIGLDRVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMALPPGSVVVTVLCDSGQRHQTRFWN 221
                  6899***********************************************9762579***********8886322223332222233222122233357****************************************************************************8776666 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.1e-10     4e-08     139     282 ..      58     209 ..      21     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.1e-10
    TIGR01127 139 gleiled.lpdvdtvivPvGGGGLisGvasavkkln.pevkviGveaeaapslvesl.........kegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavleekvd.vkgkkvavvvs 282
                  g ei ++  ++vd  ++  G GG i+Gv+ ++k  +  +v+++  +  +++ l++ +         +++k ++ +  +++a+Gi     +++t++++   +D+ v v+++e  +   +L+ ++ + + ++ a+ + a l   +  + g  v+ v++
  MMETSP1174-20130828|16488_1  58 GAEIWAQtKGKVDAFVMSAGTGGTIAGVSQVLKARTgGKVRIVLADPPGSS-LYNLVkhgvcwapeQAEKRVRKHRYDSVAEGIGL---DRVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMAlPPGSVVVTVLC 209
                  44665541689**********************876268999987766554.33333000022221445666677789******86...678**********************99******************9999999998788888888887 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.5e-10   5.6e-08     167     301 ..      68     207 ..      46     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.5e-10
    TIGR02991 167 dlalvlvplsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaG...rpvlvee..lptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaallaGkik.vkGpivvlv 301
                  +++  ++    GG ++Gv+ ++ka+      i ++   G+++++ +k G    p + e+  ++   ds+  GiGld rvt++l+ + +d+ v +s++e      +  ++e + v  + a+ + a l   ++  +G +vv v
  MMETSP1174-20130828|16488_1  68 KVDAFVMSAGTGGTIAGVSQVLKARTGGKVRIVLADPPGSSLYNLVKHGvcwAPEQAEKrvRKHRYDSVAEGIGLD-RVTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMAlPPGSVVVTV 207
                  455566667789*************99999999**************9933335554441135678*********8.8********************8777777888999999999999999888877774567776655 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.4e-09   9.1e-07     157     304 ..      57     210 ..      35     219 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.4e-09
    TIGR02079 157 vaveileqleeekidlvlvpvGGGGlisGvtsylkeks.kktkiigvePeGapslkasl.........kagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaaleels.eeikgktvvcvvsG 304
                   ++ei  q +  k+d  +++ G GG i+Gv+ +lk+++  k +i+  +P G++ l + +         +a++ v  ++ d   +G  + r   ++++ + +++d+ + v++ +   +   l+++eg+ +  + a+ + a  ++s     g+ vv+v+  
  MMETSP1174-20130828|16488_1  57 TGAEIWAQTKG-KVDAFVMSAGTGGTIAGVSQVLKARTgGKVRIVLADPPGSS-LYNLVkhgvcwapeQAEKRVRKHRYDSVAEGIGLDR---VTWQLAGAAIDDAVRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSmALPPGSVVVTVLCD 210
                  36899999988.7*********************998725889*******975.444440000111113445566666666666666666...589***************99999999****************966655665266678888888754 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06   0.00038     155     259 ..      57     167 ..      23     207 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
    TIGR01124 155 valellrqveedldavfvpvGGGGliaGvaalvkqll.peikvigveaedsaa...lkqal.....eaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevca 259
                   + e+  q++ ++da  ++ G GG iaGv+ ++k+ +  +++++  ++  s+    +k+ +     +a +rv+ ++    a+G+ + +v   t++l+   +dd v+v   e   
  MMETSP1174-20130828|16488_1  57 TGAEIWAQTKGKVDAFVMSAGTGGTIAGVSQVLKARTgGKVRIVLADPPGSSLynlVKHGVcwapeQAEKRVRKHRYDSVAEGIGLDRV---TWQLAGAAIDDAVRVSDQEALH 167
                  3679******************************765278****999988864111343333333367789999999999999998877...8999999999999998776555 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3     0.028        11     226     289 ..      30      97 ..      16     103 .. 0.80
   2 !   12.5   0.0   3.3e-05     0.012     320     376 ..     158     214 ..     123     219 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.028
    TIGR00263 226 vGGGsnaiGifaafiedeeveligveagGkGidt....ekhaatlskGkeGvlhGaktkllqdedGqi 289
                  +GGG     +f++  e+++ +   v+++G  i      + +a  +s+G+ G + G+ ++l     G++
  MMETSP1174-20130828|16488_1  30 AGGGGGVCALFTDQFETPSNKRAHVDGTGAEIWAqtkgKVDAFVMSAGTGGTIAGVSQVLKARTGGKV 97 
                  6999999999*********9999***99997654234466788999*********9887766666666 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.3e-05
    TIGR00263 320 eaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdk 376
                  + ++d+eal+  ++l+++eG+     s+  l a+ +++ +l+  ++vv  l+  G +
  MMETSP1174-20130828|16488_1 158 VRVSDQEALHVAHYLMRHEGLFVGSSSAMNLVAALRYSMALPPGSVVVTVLCDSGQR 214
                  5799******************99999999999999************999988865 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.9e-05     0.015     167     201 ..      61      91 ..      56     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.9e-05
    TIGR01275 167 iaeqlnlesevkfdsivvaaGsgGtiaGlslGlsa 201
                  i  q  ++   k+d+ v++aG+gGtiaG+s  l+a
  MMETSP1174-20130828|16488_1  61 IWAQ--TK--GKVDAFVMSAGTGGTIAGVSQVLKA 91 
                  5555..34..499****************976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.83
# Mc/sec: 410.28
//
Query:       MMETSP1174-20130828|16491_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.52
# Mc/sec: 139.60
//
Query:       MMETSP1174-20130828|16492_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1174-20130828|16489_1  [L=881]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.11s 00:00:00.64 Elapsed: 00:00:00.76
# Mc/sec: 1530.03
//
Query:       MMETSP1174-20130828|16499_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|16503_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06    8.9   0.0      0.078    8.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   1.9e-05     0.078     387     439 ..     243     301 ..     220     317 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 1.9e-05
    TIGR03903 387 veiaaaihvGsvlaeashasg......gstadvalrlqalaepGqilvseaarklLrrh 439
                  ++i+ ++h+G  +a   +++       g t ++a+r++ + + G +  s + + +L+  
  MMETSP1174-20130828|16503_1 243 LQIRVGVHTGPLVAGVIGLNKfafdmwGDTVNIASRMESTGQTGLVHCSSEVASRLESN 301
                  68889*********9999999999999************************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.98
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|16502_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1856.85
//
Query:       MMETSP1174-20130828|16505_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-06   23.2   0.0    8.4e-06   22.8   0.0    1.1  1  TIGR03465 HpnD: squalene synthase HpnD
  ------ inclusion threshold ------
      0.013   12.9   0.0      0.016   12.5   0.0    1.1  1  TIGR03464 HpnC: squalene synthase HpnC


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.1e-09   8.4e-06     150     216 ..       3      73 ..       2      82 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.1e-09
    TIGR03465 150 tnilrdvgeDaergRiYLPaeeLqrfgva....aadilearaspalaallaeqaeraralyaealallpaa 216
                  +n+lr  +  a ++R+Y+P++ ++++g +     + +++ ++  a++a+++e+a  a  +   a++ll+++
  MMETSP1174-20130828|16505_1   3 VNLLRGTAVHAGQNRLYVPRDLMTKHGAKiswvVNPPEDLEKRAAVTAVVKELAMTAGGHLTTARQLLKQQ 73 
                  6999***********************987786677778889999**********************9875 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.9e-06     0.016     157     215 ..       9      71 ..       2      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.9e-06
    TIGR03464 157 vseDlrkdRvYlpaddlerfgvseedl....aaaqataavrellafeverarallkegapLva 215
                   ++   ++R+Y+p+d + ++g++ + +    +  +  aav++++++ +  a   l+ +++L +
  MMETSP1174-20130828|16505_1   9 TAVHAGQNRLYVPRDLMTKHGAKISWVvnppEDLEKRAAVTAVVKELAMTAGGHLTTARQLLK 71 
                  55666789****************999454445566677778888888888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1174-20130828|16509_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|16510_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 358.85
//
Query:       MMETSP1174-20130828|16512_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 321.72
//
Query:       MMETSP1174-20130828|16516_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|16517_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1111.91
//
Query:       MMETSP1174-20130828|16518_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|16515_1  [L=1161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   33.6  20.8    4.6e-09   32.3   0.5    2.2  2  TIGR00918 2A060602: transmembrane receptor Patched
    0.00034   16.6  22.7    0.00086   15.3   0.3    2.2  2  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family


Domain annotation for each model (and alignments):
>> TIGR00918  2A060602: transmembrane receptor Patched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.5   2.2e-12   4.6e-09     465     557 ..     520     617 ..     466     658 .. 0.86
   2 !    5.7   9.3   0.00025      0.51     971    1119 ..     936    1083 ..     912    1091 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.2e-12
    TIGR00918 465 flalGvGvddvfllahafsetgrn.....ipleertgeilkrtGasvvltsisnvtaffmaalipipalrafslqaavvvvsnlaavllvfpailsld 557
                  f+ lG+G dd+f+l+ af ++  +       le r     +r+ ++++ ts+++v+af   a   i  + af   aav++++++++v+  +p+ + ++
  MMETSP1174-20130828|16515_1 520 FVILGIGADDIFVLSDAFKQSAFQpphisGSLETRFAWAYNRAASAMLATSLTTVAAFTSCAATTIWDIAAFGCVAAVMIACDYILVITWLPSAMIIN 617
                  899****************99877455444699*******************************************************9999766554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00025
    TIGR00918  971 isvvlvctllvvallllnpwtaglivlvlalmtvelfGimgllGiklsavpvviliasvGigveftvhvalafltaiGdrnrravlalehslapvldGalstllgvlmlagsefdfivryffavlavltvlGvlnglvllpvllsllGp 1119
                   ++v ++ +++v+  + +n   +g+   +l+++++ +f i+ ++  k+  +  + + ++ G++v + +h+a +f    G    +++ al  +   v+ G+ ++ ++ + l + +f +  + f  ++ +++      ++  +   ls lGp
  MMETSP1174-20130828|16515_1  936 LTVGIILAVVVIGAMTMNWKITGIATGALVVTVACVFFIIVIVQWKINIIESIGISLAAGMAVDYVLHLAHSFKHQHGTPPEKVKAALGEMGISVTYGMATAFVSCICLFACDFLW-FQVFGGMICIIVFSSFFVAMFGMMAALSWLGP 1083
                   445555677888999999999999999999******************************************************************************99998855.35566666676666666666666777777777 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   4.2e-07   0.00086     252     357 ..     519     627 ..     451     696 .. 0.67
   2 !    5.1  11.2   0.00049         1     593     727 ..     940    1074 ..     928    1079 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.2e-07
    TIGR00921 252 lplliGlgIdYgiqltnRyeEEr....dkgkakeeAvveavkrtgkAvliallttvlGFlalllsvlpmlkelgvllvlGlilaylltllvlpallklideirrkvmkkk 357
                  + +++G+g d    l   ++       ++  ++e     a +r++ A+l + lttv+ F + ++ ++  ++ +g +  + +   y+l ++ lp+ ++  + +  ++++  
  MMETSP1174-20130828|16515_1 519 IFVILGIGADDIFVLSDAFKQSAfqppHISGSLETRFAWAYNRAASAMLATSLTTVAAFTSCAATTIWDIAAFGCVAAVMIACDYILVITWLPSAMIINERYL-QNICTW 627
                  456667777666555555555432222455556666667889999*****************************99999999999999999999998887776.566654 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00049
    TIGR00921  593 lvlivllvvyRdivkavvpliailsvilwai..gllglagipsslilaalvslilGlGvdysihlleRyfEErkelspkeaiiralertGkailvsalTtagGFlaLllsqlpiirnfGlvavvgvllsllvalvvf 727 
                   ++l+v+++    +   ++++    +v+  a    ++ + + + + i    +sl  G+ vdy +hl++ +        p e +  al   G +++ + +T  +    L++  +   + fG +  + v++s++va+ ++
  MMETSP1174-20130828|16515_1  940 IILAVVVIGAMTMNWKITGIATGALVVTVACvfFIIVIVQWKINIIESIGISLAAGMAVDYVLHLAHSFKHQHGT--PPEKVKAALGEMGISVTYGMATAFVSCICLFACDFLWFQVFGGMICIIVFSSFFVAMFGM 1074
                   4444444444445555555554444444444004444556667777888899999**************887766..99*****************************************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.17s 00:00:01.07 Elapsed: 00:00:00.79
# Mc/sec: 1939.74
//
Query:       MMETSP1174-20130828|16521_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 722.06
//
Query:       MMETSP1174-20130828|16523_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1174-20130828|16527_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|16533_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|16534_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 539.96
//
Query:       MMETSP1174-20130828|16538_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|16540_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 240.69
//
Query:       MMETSP1174-20130828|16535_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-19   65.6   0.0    3.8e-11   40.4   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   9.3e-15   3.8e-11       4     122 ..      23     153 ..      20     157 .. 0.77
   2 !   23.1   0.0   1.7e-09     7e-06     132     317 ..     189     375 ..     178     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 9.3e-15
    TIGR01293   4 rnlgksglrvs..clglgtwvvfgsqisdeqaedllklayesginlfdiaevyaa....g.kaetelgkilkkk....gwrrssyvittkifwggkaeee...rglsrkhiieglkaslerlqleyvdivlan 122
                  + lg s + v+  c g  tw  f+ + +d +a   l   +e g+n+fd+ae y +    g  +e+ +g+ l+++      rr  + i+tk   +g  + e      s   +  +++asl r+ql+y+d+ +++
  MMETSP1174-20130828|16535_1  23 KKLGSSDMMVTevCAGTMTWGSFNEKEADAHA--QLDKLIEYGVNFFDTAELYPVafnyGeTTEQWIGNWLEQRiaegTLRREDLYIATKCNPAGIGSPEatpHNYSATRLESSVRASLARMQLDYIDLFYLH 153
                  78999999998224566679999998888665..577789***********996522223257899***998653332589**********998876655222679999999****************98876 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.7e-09
    TIGR01293 132 evvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrr.....qqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvlelda 317
                    v a+ ++ + gl   w  s   a  +      + + ++  p++ q +  l  r   e  l e  h+ gv  + ++ l  ++ ++ky d   ++ +   +  +  + k + e   r       a  ++  ala k g  + +la+aw+  +     v++g++s  q+ + ++++ + + l +s+  e+da
  MMETSP1174-20130828|16535_1 189 RQVLAVKHLFDLGLIKNWALSNENAYGLTMFCLACDRLEVPRPVCVQNDMSLNNRV-YEGDLAEAAHHFGVVGLPYGALGGGVLTGKYHDSALQSDEG--RPIEVSRMKAQPEFQPRyaapvALAATTEYIALASKYGLKPLELALAWARDRYYNGGVIIGTTSIAQVEDCVNAFMLEP-LPASLNDEIDA 375
                  56889999999999999999999999998888899999*********999988774.799****************************9984443333..3344444444444443300111556779**********************99999****************99987655.66677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:01.55
# Mc/sec: 347.43
//
Query:       MMETSP1174-20130828|16545_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1174-20130828|16546_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 172.16
//
Query:       MMETSP1174-20130828|16541_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-08   30.0   0.1       0.03   11.3   0.0    4.3  5  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
     0.0076   13.2   0.0        2.3    5.1   0.0    2.8  3  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.014        29      47      73 ..     151     176 ..     142     194 .. 0.73
   2 !    2.2   0.0    0.0087        18      70     108 ..     196     234 ..     180     238 .. 0.84
   3 !    9.1   0.0   6.9e-05      0.14      52      97 ..     238     284 ..     232     294 .. 0.82
   4 !   11.3   0.0   1.4e-05      0.03      54     108 ..     513     561 ..     493     571 .. 0.88
   5 ?   -2.6   0.0      0.25     5e+02      81     106 ..     619     644 ..     606     659 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.014
    TIGR03547  47 aefpgaareqavaavvdgklyvFgGvg 73 
                    fp+ +r +   +vv + +y+FgG+ 
  MMETSP1174-20130828|16541_1 151 EVFPSSRRGH-SLTVVYDAIYMFGGLV 176
                  5577776655.56788899******85 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0087
    TIGR03547  70 gGvgkeesesslqvlddvykydpkknsWekletrsPvgl 108
                  +G+  e+ ++  +v ++ ++y+p  n+W +l + +P  +
  MMETSP1174-20130828|16541_1 196 AGLEVEKCRGRSEVSSELWRYSPIYNQWAHLLSAPPYNF 234
                  66777777888899999**************99999876 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 6.9e-05
    TIGR03547  52 aareqavaavvdgklyvFgGvgkee.sesslqvlddvykydpkknsW 97 
                   +req +a+ +++k+ vFgGv  ++ ++ss+  l+d ++ d  + ++
  MMETSP1174-20130828|16541_1 238 SPREQHAAVELHDKIIVFGGVAYNDtESSSPAYLNDLWELDVGRLTY 284
                  589*******************9996888899999999988776665 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 1.4e-05
    TIGR03547  54 reqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgl 108
                  r ++ +++vd+ l+v+gG  +       ++ +d +++d ++ +W++l+++s  g+
  MMETSP1174-20130828|16541_1 513 RAHPSVVAVDDALFVYGGHAEF------TLSQDLWRFDRSSLKWTQLHSHSSAGM 561
                  66788999**********8655......999*******************99998 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 0.25
    TIGR03547  81 lqvlddvykydpkknsWekletrsPv 106
                   q  + v+ +d  +++W++++t+  +
  MMETSP1174-20130828|16541_1 619 SQAEQRVWLFDLWSEEWRAITTNDRR 644
                  55555666666666666666665444 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0016       3.3     153     234 ..     149     260 ..     141     271 .. 0.82
   2 !    5.1   0.0    0.0011       2.3     161     204 ..     512     556 ..     499     571 .. 0.67
   3 ?   -1.9   0.0      0.14   2.9e+02     271     298 ..     623     650 ..     617     656 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0016
    TIGR03548 153 elpdfPgeaRvqpvavalknelYvfg..............................ggdaeaytdgyayslkknkWekvaa..vlsdeepisllGaasvklneskllviGGvnk 234
                  + + fP + R  +++v + + +Y+fg                               g +e++ + + ys+  n+W ++    +    +p+     a+v+l + k++v+GGv +
  MMETSP1174-20130828|16541_1 149 DAEVFPSSRRGHSLTVVY-DAIYMFGglvdgydcsaavtdttrygspyaglevekcRGRSEVSSELWRYSPIYNQWAHLLSapPYNFTQPSPREQHAAVELHD-KIIVFGGVAY 260
                  555689999998888876.579999999999999999999999999999999988877888999999*********998766667778888889999999987.6889999976 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0011
    TIGR03548 161 aRvqpvavalknelYvfgg.gdaeaytdgyayslkknkWekvaav 204
                  +R  p +va  + l+v+gg ++ ++++d + ++ ++ kW++++  
  MMETSP1174-20130828|16541_1 512 GRAHPSVVAVDDALFVYGGhAEFTLSQDLWRFDRSSLKWTQLHSH 556
                  566666667777777777513446667777777777777776654 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.14
    TIGR03548 271 dkvliydvrsnkwksigeseavAraGaa 298
                  ++v  +d+ s++w+ i+++++ A  G a
  MMETSP1174-20130828|16541_1 623 QRVWLFDLWSEEWRAITTNDRRADKGHA 650
                  678899999999*999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.36s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 1657.44
//
Query:       MMETSP1174-20130828|16548_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|16549_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1174-20130828|16553_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 215.69
//
Query:       MMETSP1174-20130828|16555_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1174-20130828|16562_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1174-20130828|16566_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.1   0.0      0.046   11.6   0.0    1.2  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05     0.046      43      86 ..      30      73 ..      13      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
    TIGR03741 43 lakPlvlsgTpeELdegfaealkqyveareslaeqvaatravle 86
                  a+ l +sgTp+ L ++ a   ++ + +r+s+a+ +  t++ +e
  MMETSP1174-20130828|16566_1 30 AAAALFFSGTPASLGADAAVTRATASRSRQSIAQILSCTETLNE 73
                 4556899************9999***********9988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 379.17
//
Query:       MMETSP1174-20130828|16559_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-15   53.0  11.7    8.2e-15   52.6   8.1    1.2  1  TIGR00899 2A0120: sugar efflux transporter
    1.3e-06   25.7  13.2    2.4e-06   24.8   9.1    1.4  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family
    5.8e-05   20.1   3.4    5.8e-05   20.1   2.4    1.6  1  TIGR00889 2A0110: nucleoside transporter
       0.01   12.5   4.0       0.24    7.9   0.1    2.2  2  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   8.1     8e-18   8.2e-15      49     336 ..     101     398 ..      74     438 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 8e-18
    TIGR00899  49 vsqllakasDkqgdrkkLilaclllavlaavlf...alnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavmflaaavalvvaavlvtll.LPsvakeapka....ltalev.rg..llakrdvrlLlvattllwg.anilyiinmplflineLglteklaGlllgtaaGleiPvmllagylvkRlGkrlllllavvagvlfyagl..llanslvvllalqllnaifiGilagigllyfqdLmPervg.aattLytntsr.vGa 336
                    ++++ ++D+ g++++L++++++l+ l+  l+      +++  ll +  +  s a+    +l+ +a   +++ ++     +++ R+ +s+aw  g  l++ L + +++++mf++  +     +vlv l   P+  + ++ +     ++lev rg  +  + +   ++   +ll+g a +l    m+l +  e + ++  +G + ++    e P+ ll+++l+ R+G++ ll++a v+ +l+ a +  + + ++     +q l++i  G + ++ + y  + +P+  + +a  + + +   vGa
  MMETSP1174-20130828|16559_1 101 CGPIWGLQADRCGNPVGLMMLSVVLTGLFMELYrapVVIGSFAALLLVKFI-RSGANCGGTLLDLIAMATIEDRAGA---GYGAQRIAGSVAWGFGSYLVGHLIDRYGWSAMFSVTYLCS--GGVLVLLAaAPKHLHRKVSSgggrRSTLEVfRGygKFLNDPSARIFLGLVLLYGvAMALPEQIMFLQMEREFETPKASMGKITLIGTLTEYPAFLLSNQLIARFGHQQLLMVAHVTMALRLALMstVTKATQGRFAVIQGLHGICFGFAWPTIVDYSYRSAPKSLKaTAQGVVSTAYYvVGA 398
                  5689*****************************433356888888887755.5567777888999998887666665...5***************************999987654332..2333322113444333333311115566663333355555666667777888881345666779999999*********************************************999887644114555666677889999********************99986665555444333554 PP

>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   9.1   2.3e-09   2.4e-06       7     347 ..      53     408 ..      48     443 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.3e-09
    TIGR00902   7 rwlalsyltyyfayGvflpffsvwlksiqlteetiGlllGaalvar.flGsl..liaslvkdasrliialrll.allslliavalslvahvawlllvaiGlyalvfsalvpltdala.stwqkqigldyGkvrliGsvafvlGvvltGklvtlvdervilalltlllasyllifllkptiqpk....deiredevqndvaflallknpqtlrvliavgllqGahaayyvysaiywta..iGisvsavsllwslGvlaevvlfalsrklfrrisirvlllisalagvvrwaviGaiedlp..llillqllhsltyavchlaivryi.aarqqseviklqalysa....lanG.vliailtv 347
                   w+ l y++  +    +  f  v+l s+++t+   Gl   a+l a+ f G +  l a +  ++  l++   +l  l   l+ + + +++ +a ll+  i   +  +  +  l d +a +t + + g  yG  r+ Gsva+ +G+ l+G+l+  ++  ++  +  l    +l+     p    +    +  r+   +   ++  +l++p   r+++ + ll G   a                  ++++ +  +G l+e   f+ls++l+ r   ++ll+++ ++   r a++ ++++     + ++q lh   +     +iv y   + ++s  +  q++ s+    +  G +++a  t+
  MMETSP1174-20130828|16559_1  53 VWIKLLYFGNTLRDVGWGRFQGVYLNSVGMTPAQNGLARFAGLFAKtFCGPIwgLQADRCGNPVGLMMLSVVLtGLFMELYRAPVVIGSFAALLLVKFIR--SGANC-GGTLLDLIAmATIEDRAGAGYGAQRIAGSVAWGFGSYLVGHLIDRYGWSAMFSVTYLCSGGVLVLLAAAPKHLHRkvssGGGRRSTLEVFRGYGKFLNDPS-ARIFLGLVLLYGVAMALPEQIMFLQMEreFETPKASMGKITLIGTLTEYPAFLLSNQLIARFGHQQLLMVAHVTMALRLALMSTVTKATqgRFAVIQGLHGICFGFAWPTIVDYSyRSAPKSLKATAQGVVSTayyvVGAGfGSVAWNTA 408
                  6888888888887777888999********************9987477876445788888888776654444157777888888888888887776776..33444.4445555552689999*******************************999877654444444444434444332201113345556666778888888775.688888889999887765543333333013444566788999*****************************************998765225889*****************99624667888888888765411113333245555555 PP

>> TIGR00889  2A0110: nucleoside transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   2.4   5.7e-08   5.8e-05     259     363 ..     301     403 ..     182     437 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.7e-08
    TIGR00889 259 lsqlsevlfiltlpfflkrfGikkvlllslvaaalrfglfayGddetfgyvllllsilvyGvafdffnisgsvfvekevdsairasaqGlillmvnGfGallGsi 363
                  ++ l+e   +l    ++ rfG +++l+++ v++alr +l+    + t g   ++ +  ++G++f f   +   +  + ++ +++a+aqG++ +    +Ga +Gs+
  MMETSP1174-20130828|16559_1 301 IGTLTEYPAFLLSNQLIARFGHQQLLMVAHVTMALRLALMSTVTKATQGRFAVIQG--LHGICFGFAWPTIVDYSYRSAPKSLKATAQGVVSTAYYVVGAGFGSV 403
                  556666554444556789**********************9999999998888877..6********999999*****************999888777777765 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00023      0.24     142     178 ..     192     228 ..     185     234 .. 0.93
   2 !    5.6   0.4    0.0012       1.2     361     410 ..     299     348 ..     260     409 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00023
    TIGR00898 142 GslvlGqlsDrfGRkkvLllstlvtavsgvltafspn 178
                  Gs ++G+l Dr+G   ++ +++l ++ + vl a++p+
  MMETSP1174-20130828|16559_1 192 GSYLVGHLIDRYGWSAMFSVTYLCSGGVLVLLAAAPK 228
                  9*********************************997 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0012
    TIGR00898 361 llisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk 410
                   li +l e pa l+   li r+g ++ ++++ + +++ l l+  v + ++
  MMETSP1174-20130828|16559_1 299 TLIGTLTEYPAFLLSNQLIARFGHQQLLMVAHVTMALRLALMSTVTKATQ 348
                  57889***********************************9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.90
# Mc/sec: 668.74
//
Query:       MMETSP1174-20130828|16570_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1174-20130828|16568_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 338.58
//
Query:       MMETSP1174-20130828|16567_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    6.3   8.5        4.1    5.3   5.9    1.6  1  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.9     0.001       4.1      31      83 ..      14      64 ..       4      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.001
    TIGR02209 31 selqklqaeieklqkewndLqlEvaelsrheRiekiAkkqLgmklpdanqkvv 83
                  e++k+ +e + ++   ++L lE ++l++ +  +k+A ++ +++l+++nq+++
  MMETSP1174-20130828|16567_1 14 LEIEKFCKEQDVQELALEKLALEAEKLKQEQA-AKVAAQD-KLRLEKKNQELI 64
                 689999*********************98877.6677777.799999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.61
# Mc/sec: 718.37
//
Query:       MMETSP1174-20130828|16576_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 189.94
//
Query:       MMETSP1174-20130828|16577_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-11   39.8  89.4    9.9e-08   28.0  34.4    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    5.3e-07   25.5  83.4    3.3e-05   19.6  33.0    3.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        7.5    2.3   9.3        1.5    4.6   0.5    2.5  2  TIGR01666 YCCS: hypothetical membrane protein, TIGR01666


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0  34.4   7.3e-11   9.9e-08     683     978 ..       4     290 ..       2     296 .. 0.90
   2 !   16.2  25.8   2.6e-07   0.00036     700     963 ..     272     515 ..     256     538 .. 0.42

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 7.3e-11
    TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkr 978
                  +l+ee++++ e+++  eke+++l++e+++le+++ +  +el  +  +l+el+ ele+l+++ e+l++ ++ +++e+ ++e+  e+++e+   ++e++  + ++i el++++   ++e+++ +++++++++++++l+++ +   + l  +ek++++ + +   +e  ++e +e++e++    ++++++++ l++ele+l   +++++e+++++r++  ++++   el++++k +++el++ ++ + +le+++e+l  + a ++er +e +++  +e ++  +      e++++++++
  MMETSP1174-20130828|16577_1   4 NLTEELRRAREALRYSEKEASSLQSERDNLEQRTLHSGDELSVAGARLEELNDELEELRRKTEELQSLVHTAQQERGDMEQTLEAETEA---LQEKILSSAKRISELQTKLSSKSQEADSAKQQIRAQRRDIEQLRKDSQGMVQLLGGMEKQLNEFASRESGTETLAAECRESAEKAIMDRDTAQTAEAFLKKELERLRVMRKKESEDMKSARNQ--DVKTVTSELNRQLKGKDEELRRSMDTIGELEADKERLVRDKAAVEERWKELGRVLEMERSNVAK----ACESLKARITK 290
                  78999999999999999999999999999999999999999999999999999999999999999999999999999999888777775...5556899999***************************************************************************************************************99..9**********************************************99999988777766655....34455555555 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2.6e-07
    TIGR02168 700 kelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeelee 963
                  +e ++++k+ e+l+ +++k++++  +++                   +e+  ++l+ el+++++ r +++ +  e+eee+ + + e+e+l++++e+++e +  +  +++ l +e ++l+++++ +  +l+++  + +al++  ++l+ +  e+++e+++l++++++l+eel+  ++e  e++ +     ++la+ r+ l+e  ++ ++l+ k+ +l+ +l  ++++++++ +r + l+v+ +e++ +++e     +e + + ++
  MMETSP1174-20130828|16577_1 272 MERSNVAKACESLKARITKAESDHINQS-----------------VDYEKANQSLRIELQRVQAMRGSTQGRSREEEEEMMRLRHELESLQEQLEEAREVAGHQAPRIDGLMKENESLHSKISLLDLKLAEMPLKDNALKDAEQRLAHAGMENRDELQRLKSRVSKLSEELAMVNKERVEKEGQL---TAHLARERSTLSEEISDNKTLRIKAARLQVDLADAQTSMQEAGQRAAVLQVDADEMERQVNELTLQLAESFTRDQA 515
                  2222333333333333332222222222.................22233334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444433333...3444444444444444444444444555555555555555555555555555554444444444333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6  33.0   2.4e-08   3.3e-05     673     941 ..      40     300 ..      27     319 .. 0.74
   2 !   11.7  32.7   5.9e-06    0.0081     220     511 ..     201     496 ..     192     505 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.4e-08
    TIGR02169 673 ekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev 941
                    ++l    +rleeL++ele+l+++ +++++ ++ ++++  d+e+    +e+e+e+l+e+   +++r+ el++kls+ ++e   +k+++ + + +ie+l+++ + + + l  +e++l+e   +e+  e+ +  e +++ e+++ + + +  ++  l+kel++ ++  ++e+ +   +++++++    el+ +l+  +eel++    + eLe+ ++ L ++   +e+  +el +  e   +++ k+ + lk + +     + e ++++++v
  MMETSP1174-20130828|16577_1  40 SGDELSVAGARLEELNDELEELRRKTEELQSLVHTAQQERGDMEQT---LEAETEALQEKILSSAKRISELQTKLSSKSQEADSAKQQIRAQRRDIEQLRKDSQGMVQLLGGMEKQLNEFASRESGTETLAA-ECRESAEKAIMDRDTAQTAEAfLKKELERLRVMRKKESEDMKSARNQDVKTVTSELNRQLKGKDEELRRSMDTIGELEADKERLVRDKAAVEERWKELGRVLEMERSNVAKACESLKARIT-----KAESDHINQSV 300
                  45566666799*****************************999876...5678899*************************************************************998888888776654.4566677788888877777773555555555555555555555566667777778888888888888888888888888888888888888888877777666666666654444444433.....33444444444 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.9e-06
    TIGR02169 220 ekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklg...eeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkl.eqlkedlekaekelrklke...eleklekelselerelaeleaqakaseeesresk 511
                   +++    +++++ ++ ++  ++++++l+ + eel  +   i ele+  e++ ++ ++++++ ++lg   e e  +v +  e+lka i k+e+      ++  d e+ ++ +  e++++++   + +++ +ee+ e  +l +el++l+e+lee r+ +   + + + l +e ++l+ k++ l  +l e+  + + l++  +rl +++ e + el+r+++++ +l eel  +++e  ++e++l  +l+ +++++++e+++ k+   + ++l+  l +++  ++e+  +a +++    e +
  MMETSP1174-20130828|16577_1 201 MRKKESEDMKSARNQDVKTVTSELNRQLKGKDEELRRSMDTIGELEADKERLVRDKAAVEERWKELGrvlEMERSNVAKACESLKARITKAESDHI---NQSVDYEKANQSLRIELQRVQAMRGSTQGRSREEEEEMMRLRHELESLQEQLEEAREVAGHQAPRIDGLMKENESLHSKISLLDLKLAEMPLKDNALKDAEQRLAHAGMENRDELQRLKSRVSKLSEELAMVNKERVEKEGQLtAHLARERSTLSEEISDNKTlriKAARLQVDLADAQTSMQEAGQRAAVLQVDADEME 496
                  333444455666777888888999999999999999999999999999999999999999888888855578889999999999999988876554...44556666667777788888888888888888888888899999999999999999999999999999999999999999999999999998899999999999999999999999999999999999998877655555554167788888888888876653336778888888888888888777776665554444 PP

>> TIGR01666  YCCS: hypothetical membrane protein, TIGR01666
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5    0.0011       1.5     302     361 ..     116     175 ..      82     200 .. 0.82
   2 ?    2.2   1.1    0.0061       8.3     274     348 ..     277     357 ..     262     455 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0011
    TIGR01666 302 leldaslellraerrddkdllkdlgfllnnlraiekqlaqvesedvakeeleaelddeea 361
                  +e d + +++ra+rrd ++l kd + +++ l  +ekql++ +s ++ +e l ae  +   
  MMETSP1174-20130828|16577_1 116 QEADSAKQQIRAQRRDIEQLRKDSQGMVQLLGGMEKQLNEFASRESGTETLAAECRESAE 175
                  5677888999*********************************99999988666655444 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0061
    TIGR01666 274 qaqackeiarsirlrkpyqhdkrv..eralleldaslel...lr.aerrddkdllkdlgfllnnlraiekqlaqvesedva 348
                   a+ac+ + + i + ++ + ++ v  e+a + l   l++   +r + ++  +++ +++  l  +l++++ ql++  +    
  MMETSP1174-20130828|16577_1 277 VAKACESLKARITKAESDHINQSVdyEKANQSLRIELQRvqaMRgSTQGRSREEEEEMMRLRHELESLQEQLEEAREVAGH 357
                  489**********99999999876336777777776665111555556667788899999999999999999876554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       472  (0.115066); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.22s 00:00:01.39 Elapsed: 00:00:01.42
# Mc/sec: 514.01
//
Query:       MMETSP1174-20130828|16580_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1174-20130828|16586_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|16587_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 214.95
//
Query:       MMETSP1174-20130828|16583_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.55
# Mc/sec: 609.55
//
Query:       MMETSP1174-20130828|16592_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 225.35
//
Query:       MMETSP1174-20130828|16593_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|16591_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|16596_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 451.96
//
Query:       MMETSP1174-20130828|16595_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.96
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|16602_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.61
# Mc/sec: 203.39
//
Query:       MMETSP1174-20130828|16608_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 745.10
//
Query:       MMETSP1174-20130828|16612_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|16613_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.69
# Mc/sec: 99.47
//
Query:       MMETSP1174-20130828|16616_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 826.87
//
Query:       MMETSP1174-20130828|16619_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|16622_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-16   56.7   0.0    4.3e-16   56.4   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    4.5e-09   32.3   0.1    4.7e-09   32.2   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.009   13.4   0.0       0.01   13.3   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.016   12.5   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   4.2e-19   4.3e-16      79     151 ..       7      79 ..       2      81 .. 0.93

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 4.2e-19
    TIGR00955  79 lkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLr 151
                   kv+g++ lnG+ +  kemr++s+yv q+d++ ++ tv ehL+f+a+lrl+++ +++ek +r  ev  +lgL+
  MMETSP1174-20130828|16622_1   7 GKVEGAIKLNGRLIRPKEMRKVSGYVVQEDILQGMSTVFEHLNFHAQLRLSKDKSREEKSARAREVALQLGLE 79 
                  466789*****************************************************************96 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.6e-12   4.7e-09     811     881 ..       2      72 ..       1      81 [. 0.85

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.6e-12
    TIGR00956 811 eRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveev 881
                  +R++ G +++ ++l +   + +  ++ +GYv q+D+    stv e L+f A lR +k+ s++ek     ev
  MMETSP1174-20130828|16622_1   2 GRKNSGKVEGAIKLNGRLIRPKEMRKVSGYVVQEDILQGMSTVFEHLNFHAQLRLSKDKSREEKSARAREV 72 
                  699******666666666778999999*************************************9766666 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     1e-05      0.01      78     132 ..      23      79 ..       9      81 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
    TIGR02982  78 vqvrrkiGyifqahnllesltaeqnvrmale..lkeklsakeakakaeelleavgle 132
                  +++r+  Gy+ q+  l  + t+ + +++ ++  l+++ s++e++a+a+e+  ++gle
  MMETSP1174-20130828|16622_1  23 KEMRKVSGYVVQEDILQGMSTVFEHLNFHAQlrLSKDKSREEKSARAREVALQLGLE 79 
                  579*************999999886666655116778899999999***99999997 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.5e-05     0.016      55     122 ..      10      78 ..       4      81 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.5e-05
    TIGR03864  55 egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh...Glsraeaeerieealarlgl 122
                  eg ik++G  +r ++++     G v q+  l    +v + l++ha+L+     sr+e ++r +e+  +lgl
  MMETSP1174-20130828|16622_1  10 EGAIKLNGRLIRPKEMRK--VSGYVVQEDILQGMSTVFEHLNFHAQLRlskDKSREEKSARAREVALQLGL 78 
                  788999998888665554..4599***********************711134455555566666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|16632_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|16637_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.0   0.0      0.028   11.0   0.0    1.0  1  TIGR03671 cca_archaeal: CCA-adding enzyme


Domain annotation for each model (and alignments):
>> TIGR03671  cca_archaeal: CCA-adding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-06     0.028     110     162 ..      17      71 ..       1      72 [] 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-06
    TIGR03671 110 gvevDvV.PcykvesaeeiisavDrtpfHtkyvkerlkek.ledevrllKqFlkg 162
                   ++ D+V  c++v  ++++i  vDr  + + y ++  +   l+d+ rl KqF k+
  MMETSP1174-20130828|16637_1  17 HMDPDIVeRCIRVLLWHRVIVLVDRFRYSNLYATTASTALlLRDQFRLAKQFAKQ 71 
                  5666788449**********************9998888779***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 243.67
//
Query:       MMETSP1174-20130828|16633_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:01.41
# Mc/sec: 568.21
//
Query:       MMETSP1174-20130828|16644_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.89
# Mc/sec: 237.28
//
Query:       MMETSP1174-20130828|16642_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-31  106.1   0.0    2.9e-23   80.3   0.0    2.1  2  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
    0.00095   16.2   0.2     0.0015   15.5   0.1    1.2  1  TIGR02636 galM_Leloir: galactose mutarotase


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0   1.4e-26   2.9e-23      55     352 ..       2     311 ..       1     351 [. 0.80
   2 !   23.8   0.0   1.8e-09   3.8e-06     634     696 ..     732     795 ..     725     796 .. 0.90

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 1.4e-26
    TIGR02110  55 erfqgderLmawvqrqGGqvNAsTlerttdfFFelpaealaaGleRLcemLarPlltvedqqrEreVleAEyialsadadarreaalldal.saahplrrFraGsrdslalenaa....lQqALrdFhrryYqAeqmqLwLqGPQsLeeLeeLAarfgaslaageelaqaapaaL.lkfaaltlaesse.....erlvllfal.ealeaaaedavtllkeflqdeaPggLlAeLrergLaeslaatllyqdarqalLalefeatsvsaaaaeqveelllewLgalkeqalael..leeyerLeqrrlqlaaa 352
                  e+++++++   ++  +GG+ NA T    t++ F++ +e+l + l R  +   +Pl+t  + +rE + +e E    ++  d  r + l + l + +hp++ F  G+  +l ++ ++    + + L +Fh+ +Y A  m+L+  G  sL+eL+ L  r  + +  + ++ +++  +     a++ l  +         l l   + + l++ +++    l ++++ e  g++l  L+ergLa++l a l       a   ++ + t     + e++ + ++e+ ++l+    ++    +e + ++  ++  +++
  MMETSP1174-20130828|16642_1   2 EKYPDENEYRKFLSDHGGSSNAFTDTEDTNYHFDVNQEHLEGALDRFAQFFIAPLFTESATEREMNAVESEDSKNQQT-DVWRFMQLKKSLcRRTHPYHMFGTGRLATLRDKPKEdglkINEILVQFHADHYSASVMRLVVLGRESLDELNDLVVRLFSPIVNKPHVSPPVFEPFpFDAASQGLRLNVVpikdsFTLELNWQCsAVLDQYLSKPYSYLSHLIGHEGKGSILSLLKERGLANELSAGLFSSTSFFAAFGVQVDCTAEGITRVEDIVRIVYEYVAMLRVAG-PKEwiFKEKQEIAEMDFRFKSK 311
                  89*********************************************************************8766655.4555566665542678**********99998765433333899*****************************************999998875444123333333332222332223444444424578999999*********************************9999999*********99999999**********99999876.3321134555555555555555 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.8e-09
    TIGR02110 634 AAlRlLaqlletaFyqRLRvelQlGYavfsrvrrvad.rdGLllavQSPdasaaellqhikaFl 696
                  A   lL+++l t+F+  LR e QlGY v ++    ad + G+ + +QS +a +++l + i+ F+
  MMETSP1174-20130828|16642_1 732 ATTTLLSHVLSTPFFSQLRTEEQLGYIVHAGALMSADyVPGMRFLIQSETANPNKLDKRIDVFV 795
                  66679*************************9988887478**************9988888775 PP

>> TIGR02636  galM_Leloir: galactose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.5e-07    0.0015     187     267 ..     818     899 ..     802     904 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 7.5e-07
    TIGR02636 187 adkylpldeegiplge..lkevkgtsfDfrkekklkeefladee.qqlvkGyDhaflleketldlkkeaailtspdedlslevf 267
                   ++yl+ d+++i   +  +ke+++ s+Df+++ k +e++ ++   q lv+ yD  fl ++++    k  ++++s  ++ ++e  
  MMETSP1174-20130828|16642_1 818 VERYLEKDKNLIEETSryVKEISNGSYDFQSSLKKAEALRSHVTkQDLVDFYDKYFLCSSAH--FRKLSIRIWSGAHKDEMEAA 899
                  479********987652379*******************999876889999***99999996..78***********9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.89
# Mc/sec: 1448.91
//
Query:       MMETSP1174-20130828|16645_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 267.55
//
Query:       MMETSP1174-20130828|16646_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.2   5.5        0.1   10.2   1.7    2.0  2  TIGR00598 rad14: DNA repair protein
      0.015   12.6   6.9       0.15    9.3   4.8    1.9  1  TIGR01597 PYST-B: Plasmodium yoelii subtelomeric family PYST-B
      0.024   12.8   5.9      0.028   12.6   4.1    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
      0.057   10.6   3.8       0.21    8.7   2.6    1.8  1  TIGR02550 flagell_flgL: flagellar hook-associated protein 3
      0.088    9.5   5.5      0.091    9.4   3.8    1.0  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
      0.092    8.2  10.6      0.094    8.2   7.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.095    8.8   8.6        0.1    8.7   6.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
      0.095    8.7   3.8      0.094    8.7   2.6    1.0  1  TIGR00344 alaS: alanine--tRNA ligase
       0.15    9.8   5.4       0.18    9.5   3.8    1.1  1  TIGR03513 GldL_gliding: gliding motility-associated protein GldL
       0.33    7.7   8.2       0.35    7.6   5.7    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
          1    4.8   9.3          1    4.8   6.4    1.0  1  TIGR02680 TIGR02680: TIGR02680 family protein
        7.7    3.3   9.8        8.4    3.2   6.8    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00598  rad14: DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0063       2.1     114     146 ..       2      32 ..       1      45 [. 0.72
   2 ?   10.2   1.7   0.00029       0.1     104     130 ..      43      69 ..      20      72 .] 0.67

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0063
    TIGR00598 114 kfekklkelrkkvrsseytkkekkvhehefgee 146
                  k+ k++ +lrk+++s   +  + kv + e + e
  MMETSP1174-20130828|16646_1   2 KYAKEMEDLRKELKSACNA--QLKVLQNELDSE 32 
                  9************998874..344445555544 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00029
    TIGR00598 104 eekkeerkekkfekklkelrkkvrsse 130
                   e+ ++ ++ k+ k++k+lrk+++s  
  MMETSP1174-20130828|16646_1  43 FEELAKEQANKYAKEMKDLRKELKSAA 69 
                  2445677889************99875 PP

>> TIGR01597  PYST-B: Plasmodium yoelii subtelomeric family PYST-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.8   0.00043      0.15     116     182 ..       1      66 [.       1      71 [. 0.72

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00043
    TIGR01597 116 dklqkeleelkkeldnksndeleiqpihdkiiikkdennsvseeedlkqlene.knsveeehkef..dla 182
                  +k+ ke+e+l+kel+   n +l++   +    +  ++++s    e ++ l  e  n   +e k++  +l+
  MMETSP1174-20130828|16646_1   1 NKYAKEMEDLRKELKSACNAQLKVLQNE----LDSEKESSARLSETFEELAKEqANKYAKEMKDLrkELK 66 
                  68899**************999986666....56666677777788888865415888888888744444 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.1   8.1e-05     0.028      39      90 ..      11      64 ..       1      69 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.1e-05
    TIGR03495 39 qael.ekkanqleallaeakrneeaqaqLrqqlaqaeal.laqrekrierLlre 90
                 ++el ++ ++ql++l+ e++ ++e  a+L ++ ++++++ ++++ k++++L +e
  MMETSP1174-20130828|16646_1 11 RKELkSACNAQLKVLQNELDSEKESSARLSETFEELAKEqANKYAKEMKDLRKE 64
                 4444145689**********************999876516678999***9988 PP

>> TIGR02550  flagell_flgL: flagellar hook-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6   0.00061      0.21      61     127 ..       3      72 .]       1      72 [] 0.72

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00061
    TIGR02550  61 yqknidaaknrLsqeeta.LssvgdvlqrarelavqaaN..gtlsdddrkaiakeikelldeLlnlaNtk 127
                  y k   +++  L+++++a L+ + + l + +e   + +     l +++ +++ake+k+l++eL + aN++
  MMETSP1174-20130828|16646_1   3 YAKEMEDLRKELKSACNAqLKVLQNELDSEKESSARLSEtfEELAKEQANKYAKEMKDLRKELKSAANAQ 72 
                  6666666666666666544666666677777777666664456778999*******************97 PP

>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8   0.00027     0.091     411     469 ..      11      69 ..       2      72 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00027
    TIGR03998 411 eeeidalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerai 469
                   +e++++ +++ + ++++l++ ke  a++ +t+e+la+++++k  k+++ L+k l+ a 
  MMETSP1174-20130828|16646_1  11 RKELKSACNAQLKVLQNELDSEKESSARLSETFEELAKEQANKYAKEMKDLRKELKSAA 69 
                  5678889999999999999999*******************************999876 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.3   0.00028     0.094     859     923 ..       3      69 ..       1      72 [] 0.64

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00028
    TIGR02168 859 leaeieeleeele.eleeeleellkekasleealaelreeleelse.elrelekkvkelereleelr 923
                  +++e+e+l++el+ + +++l+ l++e +s++e  a+l+e  eel++ + +++ k++k+l++el+++ 
  MMETSP1174-20130828|16646_1   3 YAKEMEDLRKELKsACNAQLKVLQNELDSEKESSARLSETFEELAKeQANKYAKEMKDLRKELKSAA 69 
                  5677777777666466777777777777777777777777777654145666777777777776654 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.0    0.0003       0.1     420     486 ..       6      70 ..       2      72 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0003
    TIGR03346 420 erealkkekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakr 486
                  e e l+ke  +a +++l+ l++el++ +e sa+l+e++++   + e+++k  +e+++++ el++a +
  MMETSP1174-20130828|16646_1   6 EMEDLRKELKSACNAQLKVLQNELDSEKESSARLSETFEE--LAKEQANKYAKEMKDLRKELKSAAN 70 
                  6789********************************9865..4445666777788888888887765 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6   0.00028     0.094     691     743 ..      16      69 ..       3      72 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00028
    TIGR00344 691 vageeaiellkeeekkLkeladkLkkeleelakk.veklkeelkalrkeleslk 743
                  +a ++ +++l++e +  ke++ +L ++ eelak+ ++k  +e+k+lrkel+s +
  MMETSP1174-20130828|16646_1  16 SACNAQLKVLQNELDSEKESSARLSETFEELAKEqANKYAKEMKDLRKELKSAA 69 
                  56788899999999999**********999987615699999999999999865 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.8   0.00051      0.18     165     235 ..       2      67 ..       1      71 [. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00051
    TIGR03513 165 kYieqleklaknleaLNeiYeiqlkgaskqikalneiyaglasirdnyddaaedseslkeeleklaknlts 235
                  kY++++e l k+l+   +  ++qlk +++++++ +e  a l++  + ++   e+++++ +e++ l k+l+s
  MMETSP1174-20130828|16646_1   2 KYAKEMEDLRKELK---SACNAQLKVLQNELDSEKESSARLSETFEELA--KEQANKYAKEMKDLRKELKS 67 
                  89999999999765...567799***********999999999888775..46778888888888888876 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.7     0.001      0.35     202     267 ..       5      71 ..       2      72 .] 0.89

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.001
    TIGR01843 202 reraelqgelael.eaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskardr 267
                  +e ++l++el+++ +a+l++l++eld+ +e  + l ++f e ++e++++  +++++l++el++a + 
  MMETSP1174-20130828|16646_1   5 KEMEDLRKELKSAcNAQLKVLQNELDSEKESSARLSETFEELAKEQANKYAKEMKDLRKELKSAANA 71 
                  677888999988647899*******************************************999875 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.4     0.003         1     280     345 ..       2      68 ..       1      72 [] 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.003
    TIGR02680 280 elsrdlgeakdelekareeere.ldartealeaeaealrtrleaLqeseayqkakeleraraeaeal 345
                  +++++++++++el+ a++++ + l+++++  ++   +l +  e+L++++a + ake++ +r+e + +
  MMETSP1174-20130828|16646_1   2 KYAKEMEDLRKELKSACNAQLKvLQNELDSEKESSARLSETFEELAKEQANKYAKEMKDLRKELKSA 68 
                  689999*********99876551555666666666789999****************9999987665 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.8     0.024       8.4       2      60 ..      12      70 ..       3      72 .] 0.71

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.024
    TIGR01554  2 kelreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeea 60
                 kel+ + +++ k l+++ ++eke+ a+  ++ ++ +k++ +k  +e+++l+++++++++
  MMETSP1174-20130828|16646_1 12 KELKSACNAQLKVLQNELDSEKESSARLSETFEELAKEQANKYAKEMKDLRKELKSAAN 70
                 45555555555555588888888888888777777999999999999999988666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       505  (0.123111); expected 82.0 (0.02)
Passed bias filter:                      340  (0.0828864); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 193.94
//
Query:       MMETSP1174-20130828|16650_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 918.31
//
Query:       MMETSP1174-20130828|16654_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 560.06
//
Query:       MMETSP1174-20130828|16653_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 931.92
//
Query:       MMETSP1174-20130828|16651_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-25   85.5   0.1    3.6e-24   83.2   0.0    2.0  2  TIGR00231 small_GTP: small GTP-binding protein domain
    1.1e-22   78.3   0.0    1.1e-22   78.3   0.0    3.6  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    2.6e-10   37.8   0.9    1.6e-07   28.6   0.6    2.4  1  TIGR00092 TIGR00092: GTP-binding protein YchF
    3.3e-09   33.9   1.2    0.00058   16.7   0.0    2.5  3  TIGR03156 GTP_HflX: GTP-binding protein HflX
    4.6e-09   33.6   0.0      3e-06   24.3   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.4e-08   32.3   0.1    4.6e-08   30.6   0.0    1.8  2  TIGR00436 era: GTP-binding protein Era
    5.2e-08   30.2   0.1    3.7e-07   27.4   0.0    1.9  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    4.9e-07   26.6   0.0    7.2e-07   26.1   0.0    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
    2.3e-05   21.2   0.1     0.0037   14.0   0.1    2.1  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00017   18.9   0.1    0.00069   16.9   0.0    2.0  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0024   15.0   0.0       0.65    6.9   0.0    2.1  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0037   14.3   0.2     0.0076   13.2   0.1    1.5  1  TIGR00750 lao: LAO/AO transport system ATPase
  ------ inclusion threshold ------
      0.015   12.2   0.2      0.025   11.4   0.1    1.3  1  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
      0.017   12.1   0.4        0.1    9.5   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   1.2e-26   3.6e-24       3     132 ..      68     189 ..      66     219 .. 0.92
   2 ?   -0.3   0.0       0.6   1.7e+02     108     126 ..     243     259 ..     213     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 1.2e-26
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkv 132
                  + ++++vG+++vGKstLl  l+++  s+ +s++++t ++++   +++G  +k+++lD++G ++ +++ + + r+v + ++++d++++vld  +++  ++++i++e+   g++i+l+++ +D+++   +k+
  MMETSP1174-20130828|16651_1  68 DTRVGLVGFPSVGKSTLLTTLTGTF-SEAASYEFTTLTAIPGTLKYRG--AKIQILDLPGIIEGAKDGKGRGRQVISAARTCDMILIVLDCMKPV-THKRIIEKELA--GFGIRLNSSVPDIVF--RKKD 189
                  679**********************.**********************..89*******************************************.***********..********9999998..4333 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.6
    TIGR00231 108 akkkgvpiilvvnKiDlkd 126
                  +k   +p + v+nKiD+ +
  MMETSP1174-20130828|16651_1 243 CK--YMPCLYVMNKIDQLT 259
                  44..6899999*****976 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   3.8e-25   1.1e-22     160     286 ..      71     191 ..      66     224 .. 0.91
   2 ?    2.1   0.0     0.059        17     276     328 ..     248     294 ..     233     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 3.8e-25
    TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidll 286
                  vglvG+p++GkStll++++ + ++ a+Y+FtTl+   G ++++   ++ + D+Pg+iega++g+g G + +     + ++l ++d+ +     pv++ ++iekeL+ +  +L++    +v+ k d  
  MMETSP1174-20130828|16651_1  71 VGLVGFPSVGKSTLLTTLTGTFSEAASYEFTTLTAIPGTLKYRG-AKIQILDLPGIIEGAKDGKGRGRQVISAARTCDMILIVLDCMK-----PVTHKRIIEKELAGFGIRLNSSVPDIVFRKKDKG 191
                  9******************************************9.99**************************************987.....5999****************99999999999974 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.059
    TIGR02729 276 elvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllell 328
                   l v+nkid+l+ eel+ +++++      + + is+++k +++ l+++++++l
  MMETSP1174-20130828|16651_1 248 CLYVMNKIDQLTIEELN-IIDQM-----PHHVPISSYHKWNIDMLMEEVWNYL 294
                  57799999999855543.33333.....35579***************99876 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.6   5.3e-10   1.6e-07       4     109 ..      70     157 ..      68     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 5.3e-10
    TIGR00092   4 kaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfe 109
                  + G+vG p vGkstl   +t +   eaa y f+t+ +  g+                  k   ++++++D+ G+++Ga  G+G G + ++  R  d i+ v  c +
  MMETSP1174-20130828|16651_1  70 RVGLVGFPSVGKSTLLTTLTGTFS-EAASYEFTTLTAIPGT-----------------LKYRGAKIQILDLPGIIEGAKDGKGRGRQVISAARTCDMILIVLDCMK 157
                  68******************9877.********98765554.................455667899**********************************99975 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.7       4.4   1.3e+03     104     148 ..      15      60 ..       9      60 .. 0.66
   2 !   16.7   0.0     2e-06   0.00058     187     249 ..      66     127 ..      61     194 .. 0.77
   3 !   15.7   0.0   3.9e-06    0.0011     299     348 ..     243     291 ..     227     294 .. 0.87

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 4.4
    TIGR03156 104 aqrArtkegkl.qVelAqlkyllprlvrkgthlsrqkgGiGtrGpG 148
                  a+ Art++ k    +l  lk ++++l r+  + +  +gG G  G G
  MMETSP1174-20130828|16651_1  15 AEYARTQKNKAtNGHLGLLKAKMAKLRREMLAGDTAGGGGGGGGEG 60 
                  5666776666414567778888888888877777777777766665 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 2e-06
    TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFir 249
                  s   +v+lvG+   GKstll +lt++   a+   F+TL +   +lk++ + ++ + D  G i+
  MMETSP1174-20130828|16651_1  66 SGDTRVGLVGFPSVGKSTLLTTLTGTFSEAASYEFTTLTAIPGTLKYRGA-KIQILDLPGIIE 127
                  55679*********************************999888888766.566667666665 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 3.9e-06
    TIGR03156 299 aeeipvllvlNkidkleeeeleeleekkeeavlvsAkkgegleeLleaie 348
                  ++ +p+l+v+Nkid+l+ eel+  ++  +++v +s+ ++++++ L+e++ 
  MMETSP1174-20130828|16651_1 243 CKYMPCLYVMNKIDQLTIEELNIIDQM-PHHVPISSYHKWNIDMLMEEVW 291
                  56789************9999999775.99****************9886 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     1e-08     3e-06       3      95 ..      71     161 ..      30     203 .. 0.73
   2 !    7.4   0.0    0.0014      0.42     109     162 ..     246     296 ..     215     314 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1e-08
    TIGR03594   3 vaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglte 95 
                  v +vG p VGKStL+  l+++  +A   +++ +T     g+ +++g +++++D +G+ e +++  k   +q+  a +++d+il v+d  + +t+
  MMETSP1174-20130828|16651_1  71 VGLVGFPSVGKSTLLTTLTGTFsEAA--SYEFTTLTAIPGTLKYRGAKIQILDLPGIIEGAKD-GKGRGRQVISAARTCDMILIVLDCMKPVTH 161
                  56777777777777777777641343..34444444677777777777777777777333333.244556777777777777777776665554 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
    TIGR03594 109 kpvilvvNKvdnkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileelpe 162
                   p++ v+NK+d+ + e+   +++   + + ++iS+ h+ +i+ L++e+ + l+ 
  MMETSP1174-20130828|16651_1 246 MPCLYVMNKIDQLTIEEL--NII-DQMPHHVPISSYHKWNIDMLMEEVWNYLKM 296
                  588999*****9965544..222.2467889*****************988865 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.6e-10   4.6e-08       2     103 ..      70     169 ..      69     203 .. 0.85
   2 ?   -1.1   0.0      0.73   2.1e+02     129     177 ..     260     309 ..     248     314 .. 0.70

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.6e-10
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedelllekl 103
                  +v+++G p+vGKSTLl +l+g  +   S    TT+ +i g l     +i  +D PG+ e  ++ ++   +++ +a +  d+il v+d  +   + +++ ++l
  MMETSP1174-20130828|16651_1  70 RVGLVGFPSVGKSTLLTTLTGTFSEAAS-YEFTTLTAIPGTLKYRGAKIQILDLPGIIEGAKD-GKGRGRQVISAARTCDMILIVLDCMKPVTHKRIIEKEL 169
                  79*******************9877665.689*************************998554.444578899999**********9988877767766665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.73
    TIGR00436 129 idkeasllefkeiveisalkgenveelkaiveaklreg.pfyypedyvtd 177
                  i++++++ +  + v+is  ++ n++ l + v ++l+   ++ +p+ ++ d
  MMETSP1174-20130828|16651_1 260 IEELNIIDQMPHHVPISSYHKWNIDMLMEEVWNYLKMMrVYTKPKGQIPD 309
                  44455555555889999999999999999999999865145566666655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.3e-09   3.7e-07     210     309 ..      69     165 ..      59     175 .. 0.87
   2 ?    0.3   0.0      0.21        62     316     363 ..     245     294 ..     225     312 .. 0.61

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.3e-09
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeli 309
                   ++ +vG + vGKS Ll  l  +  +  ++++ tt   + + l+  G ++++lD  Gi e a+     G ++  +a++++d++l vlD  kp t++  +i
  MMETSP1174-20130828|16651_1  69 TRVGLVGFPSVGKSTLLTTLTGT-FSEAASYEFTTLTAIPGTLKYRGAKIQILDLPGIIEGAKDGKGRG-RQVISAARTCDMILIVLDCMKPVTHKR-II 165
                  5799*************988766.456789******************************998877777.67899******************7765.44 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.21
    TIGR00450 316 kkdlllvlNKiDLaeleilkselklt..vsllsakqlkikelvdllteki 363
                    ++l v+NKiD  + e+l+   +++  v   s ++ +i  l++ + +++
  MMETSP1174-20130828|16651_1 245 YMPCLYVMNKIDQLTIEELNIIDQMPhhVPISSYHKWNIDMLMEEVWNYL 294
                  4689********88666655533333002233334444444444444444 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.5e-09   7.2e-07       1      51 [.      75     125 ..      75     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.5e-09
    TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGi 51 
                  G p vGKstl+  Ltg+  + + +  +T     g+l+++g +i+i DlPGi
  MMETSP1174-20130828|16651_1  75 GFPSVGKSTLLTTLTGTFSEAASYEFTTLTAIPGTLKYRGAKIQILDLPGI 125
                  6799**********************************************9 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.3e-05    0.0037       5     100 ..      66     159 ..      62     191 .. 0.84
   2 !    5.2   0.0    0.0056       1.7     114     171 ..     244     298 ..     227     318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
    TIGR03918   5 aerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeael 100
                  +  ++++l+G   +GKS+l+ +ltg+  +  ++++ tT  ++  ++       + ++D +G+ + ++ G+ R ++  ++ +++d++l+v+d+ + +
  MMETSP1174-20130828|16651_1  66 SGDTRVGLVGFPSVGKSTLLTTLTGT-FSEAASYEFTTLTAIPGTLKYRG-AKIQILDLPGIIEGAKDGKGRGRQVISAARTCDMILIVLDCMKPV 159
                  556789******************97.55666788899889999887665.4799************************************98433 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0056
    TIGR03918 114 kkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiellpeea 171
                  k +p+++v+nkid+ + e   e +   +  ++v +s+ +k++i+ l e++ + l+   
  MMETSP1174-20130828|16651_1 244 KYMPCLYVMNKIDQLTIE---ELNIIDQMPHHVPISSYHKWNIDMLMEEVWNYLKMMR 298
                  568***********9985...45555666788999*************9998876655 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.3e-06   0.00069     118     174 ..      68     126 ..      62     134 .. 0.84
   2 ?   -1.9   0.0       1.2   3.6e+02      49      68 ..     246     265 ..     242     304 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.3e-06
    TIGR03596 118 airalvvGiPNvGKStliNrlakk.kvakvgnkpgvTksqqwiklsk.eleLlDtPGil 174
                   +r+  vG+P vGKStl+ +l++  + a + +   +T    ++k++  ++++lD PGi+
  MMETSP1174-20130828|16651_1  68 DTRVGLVGFPSVGKSTLLTTLTGTfSEAASYEFTTLTAIPGTLKYRGaKIQILDLPGII 126
                  578899****************983456677778999999999986439********97 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
    TIGR03596  49 kprlivlnkaDladpektkk 68 
                   p+l+v+nk D    e+ + 
  MMETSP1174-20130828|16651_1 246 MPCLYVMNKIDQLTIEELNI 265
                  58999999999887776654 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0047       1.4       5      38 ..      68     101 ..      64     119 .. 0.84
   2 !    6.9   0.0    0.0022      0.65     174     197 ..     272     295 ..     247     305 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0047
    TIGR03680   5 evniglvGhvDhGkttlvkaltGvwtdthseelk 38 
                  ++ +glvG    Gk+tl ++ltG + +  s e  
  MMETSP1174-20130828|16651_1  68 DTRVGLVGFPSVGKSTLLTTLTGTFSEAASYEFT 101
                  6789********************9999888865 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0022
    TIGR03680 174 iiPvsalkkvnidvllealekeip 197
                   +P+s+++k nid+l+e + ++++
  MMETSP1174-20130828|16651_1 272 HVPISSYHKWNIDMLMEEVWNYLK 295
                  59***************9988776 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.6e-05    0.0076      33      59 ..      68      93 ..      63     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.6e-05
    TIGR00750 33 rahvvGltGvPGaGkstlveklieelr 59
                    +vGl G+P +Gkstl+  l+ ++ 
  MMETSP1174-20130828|16651_1 68 D-TRVGLVGFPSVGKSTLLTTLTGTFS 93
                 4.479***************9997765 PP

>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.7e-05     0.025     243     281 ..     275     310 ..     243     313 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.7e-05
    TIGR02092 243 vksyykanmdlleekifkslfylsqskiytKvkdeePtk 281
                  + sy+k n+d+l e++++ l      ++ytK k ++P +
  MMETSP1174-20130828|16651_1 275 ISSYHKWNIDMLMEEVWNYLK---MMRVYTKPKGQIPDY 310
                  89***************9776...557******999965 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00036       0.1     156     217 ..      69     127 ..      62     132 .. 0.73
   2 ?    0.4   0.0      0.21        62      81     105 ..     235     259 ..     198     296 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00036
    TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl...dkesvllDtpGiin 217
                    v +vG   VGKS+l+  l  + ++  +      +  TTl  i   l    ++ ++lD pGii+
  MMETSP1174-20130828|16651_1  69 TRVGLVGFPSVGKSTLLTTLTGTFSEAAS------YEFTTLTAIPGTLkyrGAKIQILDLPGIIE 127
                  56778**************9988776555......6666666665554223356699******97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.21
    TIGR03597  81 likelkrfvkenkvllvvNKidllp 105
                  +i+ ++  +k  ++l+v+NKid l 
  MMETSP1174-20130828|16651_1 235 FIDVVNGDCKYMPCLYVMNKIDQLT 259
                  556666667788999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.82
# Mc/sec: 740.43
//
Query:       MMETSP1174-20130828|16657_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.98
# Mc/sec: 75.42
//
Query:       MMETSP1174-20130828|16659_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1174-20130828|16660_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00055   15.7   0.0    0.00067   15.4   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0086   12.9   0.7        0.6    6.8   0.3    2.0  2  TIGR03742 PRTRC_F: PRTRC system protein F
  ------ inclusion threshold ------
      0.022   12.1   0.0      0.028   11.8   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.9e-07   0.00067     442     519 ..      51     128 ..      39     141 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.9e-07
    TIGR02917 442 LrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAk 519
                  L  +e   a+ a+++l++++pd a+  n l+     ++d a+  + +   + ++p +f A++   + +++ +n++dA 
  MMETSP1174-20130828|16660_1  51 LAYQEDGEAIRALEELIEQYPDWAEPVNQLATLRYREGDVAESVKLYLRVMHLKPWHFGAIHGIQMSHVELGNMEDAE 128
                  555666678888999999999999999999999999999999999999999999999999998888888888888886 PP

>> TIGR03742  PRTRC_F: PRTRC system protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3   0.00044       0.6     158     193 ..      32      69 ..      25      72 .. 0.84
   2 !    4.5   0.0    0.0022         3     261     284 ..      71      93 ..      70      95 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00044
    TIGR03742 158 syiywegekde..eealeelcdeddeereaylpsvveq 193
                   + +w ge+ e  +eale+l+ ++d e+ + l++++eq
  MMETSP1174-20130828|16660_1  32 LRHHWSGEEGEaaREALELLAYQEDGEAIRALEELIEQ 69 
                  567999987543389*********************98 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0022
    TIGR03742 261 pdqdaesigslaliawddsdvvte 284
                  pd +ae++ +la+++++++dv++ 
  MMETSP1174-20130828|16660_1  71 PD-WAEPVNQLATLRYREGDVAES 93 
                  55.******************986 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05     0.028     147     198 ..      52     103 ..      43     133 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
    TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqt 198
                  + +++ +a  +l++++++ p+ +e +++la l + +g++ae  +l+ r+ ++
  MMETSP1174-20130828|16660_1  52 AYQEDGEAIRALEELIEQYPDWAEPVNQLATLRYREGDVAESVKLYLRVMHL 103
                  567788999***********************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|16661_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1174-20130828|16663_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 408.74
//
Query:       MMETSP1174-20130828|16662_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|16669_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   42.1   2.7    1.6e-11   41.7   1.9    1.3  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   1.9   3.9e-15   1.6e-11     298     400 .]      79     180 ..       6     180 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 3.9e-15
    TIGR00883 298 tvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiyllllalisl 400
                   +++all  p++  l+ s++++++ +  ll++l++ m+ g     l+ +fp ++R+++++la nl+++i gglap+ a+ Lv+ tg+  ++g+++++ a isl
  MMETSP1174-20130828|16669_1  79 ATALALLSPPIFYGLA-SGDVIIAGFCHLLATLAFCMFDGSLPVWLVHMFPPKLRASALGLAWNLSAAIVGGLAPATAVLLVRETGSAGSPGYLVCFFACISL 180
                  3455666778888888.7788888888888888999************************************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 795.82
//
Query:       MMETSP1174-20130828|16670_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 637.32
//
Query:       MMETSP1174-20130828|16672_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|16673_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1174-20130828|16674_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 211.98
//
Query:       MMETSP1174-20130828|16676_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1174-20130828|16677_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.64
# Mc/sec: 426.90
//
Query:       MMETSP1174-20130828|16678_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 972.55
//
Query:       MMETSP1174-20130828|16680_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1107.56
//
Query:       MMETSP1174-20130828|16682_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 583.21
//
Query:       MMETSP1174-20130828|16684_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.2   2.0      0.041   11.0   1.1    1.3  1  TIGR00159 TIGR00159: TIGR00159 family protein


Domain annotation for each model (and alignments):
>> TIGR00159  TIGR00159: TIGR00159 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   9.9e-06     0.041       9      62 ..      14      67 ..       7     110 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.9e-06
    TIGR00159  9 dflsraldlslviilvyklikvvreskavqllkGllvivvvqlislvllllllk 62
                 d ++++ d ++v+++++ +i  v+e + + + +Gl v+ + +l++ +  l  + 
  MMETSP1174-20130828|16684_1 14 DLFAEIKDWAIVSMVIFTIIIQVHELQGIGIPRGLSVMLITTLLAVYGILAYFC 67
                 78999*****************************99888887766554443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 743.94
//
Query:       MMETSP1174-20130828|16686_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 843.03
//
Query:       MMETSP1174-20130828|16687_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 941.52
//
Query:       MMETSP1174-20130828|16685_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1859.32
//
Query:       MMETSP1174-20130828|16688_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 1687.57
//
Query:       MMETSP1174-20130828|16693_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|16691_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.75
# Mc/sec: 1385.01
//
Query:       MMETSP1174-20130828|16702_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|16701_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 928.64
//
Query:       MMETSP1174-20130828|16703_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|16706_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|16715_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 215.98
//
Query:       MMETSP1174-20130828|16709_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-08   31.1   0.2    4.3e-08   30.7   0.1    1.1  1  TIGR01933 hflK: HflK protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   1.1e-11   4.3e-08      77     247 ..       6     176 ..       2     186 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.1e-11
    TIGR01933  77 ylfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeerlineaeayanevvPkarGeAqriieeAkgYkeerineAkg...dverfekllaeykkapevtreRLyletlekvlentekvll 247
                   +f++en+   ++   d +lr+ +   +lde+ +  + ++r+++ ++l++++++y  G  ++dv + +  p + v +A ++++a r ++e +i+++ea +  +v  a+ +A++      g +  r +   g    v  +++   + + a ++     yl+tl+++ + +  +++
  MMETSP1174-20130828|16709_1   6 AVFDIENPIRQINAYVDDVLRSTLPVLDLDEVYSA-KDKMRSAILDSLHQSMEPY--GYRIMDVLITDLSPERSVLDAMNEINASRRKREAAIEKGEADKILIVKAAEADAESKYLSGVGVARMRTAITDGfknSVSAMSETGIDAHDAIHMMLVTQYLDTLKDLGQSNATIMV 176
                  589999999999999*****************998.99****************9..7899*************************************************9988777777666555544440003444444444445555555556677777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.69
# Mc/sec: 386.40
//
Query:       MMETSP1174-20130828|16714_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 515.39
//
Query:       MMETSP1174-20130828|16716_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.1   0.0    1.4e-05   22.2   0.0    2.0  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.3e-09   1.4e-05     174     309 ..      91     219 ..      45     228 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.3e-09
    TIGR01293 174 piveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklss 309
                    ++q ++ l+ r+ +   l +    +gv  + +splal+l +++y ++  +      kg +    k ++  g   +  l  l+a+ae+   t++q+ai ws+ + +v   ++ga +aeq++e+lg++    +ls+
  MMETSP1174-20130828|16716_1  91 LATNQVQFSLLSRQPLLNGLFDTCVELGVVPIGYSPLALGLLSGRYTGDPAHDMPLLPKGPRGALFK-QILPGV--TPLLSTLKAVAEEEQKTIPQVAINWSICKGAVP--IVGAKTAEQVKENLGAIGW--RLSP 219
                  4566777777777777777777778899999999999999999999887443333333555544444.334443..567999**********************99997..56*************9864..4455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 920.15
//
Query:       MMETSP1174-20130828|16718_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|16722_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 388.43
//
Query:       MMETSP1174-20130828|16729_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1001.40
//
Query:       MMETSP1174-20130828|16732_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 323.15
//
Query:       MMETSP1174-20130828|16736_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00068   17.1   0.0    0.00068   17.1   0.0    1.0  1  TIGR01929 menB: naphthoate synthase


Domain annotation for each model (and alignments):
>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-07   0.00068     186     229 ..       3      48 ..       1      60 [. 0.79

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-07
    TIGR01929 186 aeleketvewareilaksplalrllkaalnadldGqa..GlqelaG 229
                  ae+ ++++e+a++i ++sp+a+r  k  ln   d  +  Gl  +a 
  MMETSP1174-20130828|16736_1   3 AEVLEAAMELAQQIAQQSPVAVRGTKVNLNFSRDHSVadGLDYMAT 48 
                  5666789***********************9999754226666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|16738_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|16739_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.56
# Mc/sec: 153.20
//
Query:       MMETSP1174-20130828|16747_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 367.09
//
Query:       MMETSP1174-20130828|16750_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 172.16
//
Query:       MMETSP1174-20130828|16752_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.51
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|16746_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 759.61
//
Query:       MMETSP1174-20130828|16754_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-06   23.8   0.0    3.5e-06   23.7   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   8.4e-10   3.5e-06     142     205 ..       2      68 .]       1      68 [] 0.80

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 8.4e-10
    TIGR01982 142 eVavKvlRPgiekkieadikllellaklvekl.lpeakrlrpt..evvkefektlkeEldlrlEaan 205
                  eVa+Kv+RP+  +ki++d   +  + k +e+    ++ +++++   +v+++++ + +Eld+r Ea+n
  MMETSP1174-20130828|16754_1   2 EVAIKVQRPDAIQKISTDYMCFLGVLKALETKwRLSGSKFDFSlaPIVNRIATDVYDELDYRKEARN 68 
                  7*****************88777666666654144667777652279******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:01.25
# Mc/sec: 71.80
//
Query:       MMETSP1174-20130828|16757_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-08   30.2   1.4    5.1e-08   30.1   1.0    1.0  1  TIGR00773 NhaA: Na+/H+ antiporter NhaA


Domain annotation for each model (and alignments):
>> TIGR00773  NhaA: Na+/H+ antiporter NhaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.0   1.2e-11   5.1e-08     116     170 ..       6      59 ..       3      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.2e-11
    TIGR00773 116 reGwaipaatdiafalGvlallgkrvplalkvfllalaiiddlGaiviialfyts 170
                  + Gw++p+atdi++a  v a+l+  +  +   fll la++dd   ++iia+fy +
  MMETSP1174-20130828|16757_1   6 IAGWGVPTATDISLAWMV-AVLTFGLGHSAIDFLLLLAVVDDGIGLIIIAIFYPD 59 
                  78*************865.6777778888888**********99999******64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.85
# Mc/sec: 142.86
//
Query:       MMETSP1174-20130828|16758_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 436.93
//
Query:       MMETSP1174-20130828|16760_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   15.0   0.0     0.0046   14.8   0.0    1.2  1  TIGR02725 phenyl_P_gamma: phenylphosphate carboxylase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR02725  phenyl_P_gamma: phenylphosphate carboxylase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-06    0.0046      17      55 ..      16      54 ..       7      73 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
    TIGR02725 17 gkelelsvrtlnpglkkytyqrvkaelsnaldkfpdrlq 55
                 g  +   vr+l+p + k++++ v+  + ++l++f  +  
  MMETSP1174-20130828|16760_1 16 GVSITGVVRALDPDMAKFSFDAVRQRIKKTLERFTSKES 54
                 6667778***************************88755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.72
# Mc/sec: 148.49
//
Query:       MMETSP1174-20130828|16759_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:01.02
# Mc/sec: 472.31
//
Query:       MMETSP1174-20130828|16761_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|16763_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   10.8   0.3      0.058   10.5   0.2    1.1  1  TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
       0.12   10.4   2.1       0.23    9.4   1.4    1.6  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR00515  accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   2.8e-05     0.058      27      53 ..      16      43 ..       7      49 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.8e-05
    TIGR00515 27 tkcpkckkllytkeleknl.evclkcdy 53
                  +c+ c+ +ly++e   ++ e c+ c+ 
  MMETSP1174-20130828|16763_1 16 LQCTVCSSVLYHRECAGKWaESCPTCNR 43
                 68**************998468****86 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3     0.055   1.1e+02      25      34 ..      14      23 ..       5      30 .. 0.68
   2 ?    9.4   1.4   0.00011      0.23       7      42 ..      17      51 ..      15      57 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.055
    TIGR02605 25 plasCPeCgs 34
                 ++ +C  C+s
  MMETSP1174-20130828|16763_1 14 DALQCTVCSS 23
                 5666777766 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00011
    TIGR02605  7 rCtaCghefevlqkmsddplasCPeCgseelerlls 42
                 +Ct C       + ++ + + sCP+C+++++ + + 
  MMETSP1174-20130828|16763_1 17 QCTVCSS-VLYHRECAGKWAESCPTCNRNTIVKWVR 51
                 6999999.6666777778999*******99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.88
# Mc/sec: 116.99
//
Query:       MMETSP1174-20130828|16764_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.80
# Mc/sec: 94.04
//
Query:       MMETSP1174-20130828|16766_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 844.18
//
Query:       MMETSP1174-20130828|16773_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.59
# Mc/sec: 208.05
//
Query:       MMETSP1174-20130828|16774_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 208.40
//
Query:       MMETSP1174-20130828|16777_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 552.93
//
Query:       MMETSP1174-20130828|16781_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 218.72
//
Query:       MMETSP1174-20130828|16776_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-11   38.6   0.5     0.0076   12.5   0.0    4.3  4  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    2.8e-06   23.8   1.0     0.0072   12.6   0.0    4.2  5  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
      2e-05   22.8   0.6          2    6.5   0.0    5.0  5  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
    0.00011   19.8   0.4        2.1    5.9   0.0    4.5  5  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
  ------ inclusion threshold ------
      0.013   12.4   1.6       0.26    8.0   0.0    3.1  4  TIGR01953 NusA: transcription termination factor NusA
        1.5    5.0   7.0       0.47    6.7   0.0    3.0  4  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00019      0.13     562     589 ..      45      72 ..      33     103 .. 0.84
   2 !    9.9   0.1   7.1e-05     0.049     555     592 ..     134     171 ..     118     191 .. 0.84
   3 ?    2.2   0.0     0.015        10     550     587 ..     304     341 ..     299     368 .. 0.83
   4 !   12.5   0.0   1.1e-05    0.0076     551     596 ..     616     663 ..     599     691 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00019
    TIGR03591 562 ireviGkgGkvireiieetgakidiedd 589
                   +++iG+gG++++++  +tga+i+i d 
  MMETSP1174-20130828|16776_1  45 THRIIGQGGSNVQAVRADTGAQIKILDR 72 
                  578**********************885 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 7.1e-05
    TIGR03591 555 ikinkdkireviGkgGkvireiieetgakidieddGtv 592
                  + i++++++ ++GkgG +ir i e++ga+i+++ d  v
  MMETSP1174-20130828|16776_1 134 LLIRRSQVGCLMGKGGCIIRGIREASGANINVRRDKDV 171
                  668999**************************988666 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.015
    TIGR03591 550 PrietikinkdkireviGkgGkvireiieetgakidie 587
                  P +  + +   k+  +iG+ G+ ir ++ ++ga i + 
  MMETSP1174-20130828|16776_1 304 PITFRLVVAAWKVPVLIGRNGASIRGLQASSGADIRVL 341
                  66667788888999********************9885 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 1.1e-05
    TIGR03591 551 rietikinkdkireviGkgGkvireiieetgakidiedd..Gtvkiaa 596
                    e+++++ dki+++iG +G++++ i +++ga ++i+ +  G  +i++
  MMETSP1174-20130828|16776_1 616 CHEQFSVPGDKIGNIIGWKGSKVQLIRSQSGADVKISTSpmGGERIIS 663
                  567899****************************99876555555554 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.039        27     592     625 ..      47      85 ..      33      99 .. 0.75
   2 !    4.5   0.0    0.0029         2     557     620 ..     112     171 ..      94     185 .. 0.77
   3 ?   -1.7   0.0      0.22   1.5e+02     581     614 ..     307     340 ..     288     360 .. 0.82
   4 ?   -1.1   0.0      0.15     1e+02     582     617 ..     427     462 ..     411     473 .. 0.85
   5 !   12.6   0.0   1.1e-05    0.0072     581     615 ..     618     652 ..     598     674 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.039
    TIGR02696 592 evigpkgkvinsiqdetgaeisied.....dgtvyigaa 625
                   +ig  g  +++++ +tga+i i d     d tv ++ a
  MMETSP1174-20130828|16776_1  47 RIIGQGGSNVQAVRADTGAQIKILDrvpqvDCTVAVSWA 85 
                  689*******************97644444666666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0029
    TIGR02696 557 laildvlaeaidspdelsetaprviavkipvdkigevigpkgkvinsiqdetgaeisieddgtv 620
                  la l +l+ ai+  +e + +a     + i   ++g ++g  g +i  i++ +ga+i +  d  v
  MMETSP1174-20130828|16776_1 112 LATLRILDLAIQDHAEDAAEAR----LLIRRSQVGCLMGKGGCIIRGIREASGANINVRRDKDV 171
                  5566666667766666555553....33556799************************998766 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.22
    TIGR02696 581 iavkipvdkigevigpkgkvinsiqdetgaeisi 614
                   ++ +   k+  +ig  g  i  +q  +ga+i +
  MMETSP1174-20130828|16776_1 307 FRLVVAAWKVPVLIGRNGASIRGLQASSGADIRV 340
                  455566678999*******************976 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.15
    TIGR02696 582 avkipvdkigevigpkgkvinsiqdetgaeisiedd 617
                  ++ i  +  g ++gp+g v+ +++  +ga++ +  d
  MMETSP1174-20130828|16776_1 427 RLLIAKHECGCLMGPRGAVMAQMRAISGAQLHVVTD 462
                  55566678899******************9987666 PP

  == domain 5    score: 12.6 bits;  conditional E-value: 1.1e-05
    TIGR02696 581 iavkipvdkigevigpkgkvinsiqdetgaeisie 615
                   +  +p dkig++ig kg  ++ i+ ++ga++ i 
  MMETSP1174-20130828|16776_1 618 EQFSVPGDKIGNIIGWKGSKVQLIRSQSGADVKIS 652
                  56789**************************9996 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0     0.003         2      47      75 ..      48      76 ..      33      86 .. 0.82
   2 ?    3.1   0.0     0.034        23      34      68 ..     131     165 ..     116     174 .. 0.81
   3 ?    2.4   0.0     0.057        39      37      75 ..     309     347 ..     305     373 .. 0.76
   4 ?    1.9   0.0     0.082        56      33      81 ..     424     472 ..     413     509 .. 0.74
   5 ?    1.3   0.0      0.12        84      39      68 ..     622     651 ..     618     674 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.003
    TIGR01952 47 AiGkgGanvkkveellgkkvelveesedl 75
                  iG+gG+nv++v++  g ++++++  +++
  MMETSP1174-20130828|16776_1 48 IIGQGGSNVQAVRADTGAQIKILDRVPQV 76
                 59*******************99887765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.034
    TIGR01952  34 rvvfvvkkgemgvAiGkgGanvkkveellgkkvel 68 
                     +++++ ++g  +GkgG  ++ ++e  g ++++
  MMETSP1174-20130828|16776_1 131 EARLLIRRSQVGCLMGKGGCIIRGIREASGANINV 165
                  55689*********************999999987 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.057
    TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelveesedl 75 
                  +vv++ ++ v iG++Ga ++ +++  g  + ++ +  d 
  MMETSP1174-20130828|16776_1 309 LVVAAWKVPVLIGRNGASIRGLQASSGADIRVLSQRADK 347
                  57888899999*****************99998765443 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.082
    TIGR01952  33 drvvfvvkkgemgvAiGkgGanvkkveellgkkvelveesedleefvkn 81 
                    + ++++k e g  +G+ Ga + ++++  g ++++v +   + +  +n
  MMETSP1174-20130828|16776_1 424 GCIRLLIAKHECGCLMGPRGAVMAQMRAISGAQLHVVTDPSAMPDCSEN 472
                  457789***********************99999999887666555555 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.12
    TIGR01952  39 vkkgemgvAiGkgGanvkkveellgkkvel 68 
                  v  +++g  iG +G++v+ ++ + g  v++
  MMETSP1174-20130828|16776_1 622 VPGDKIGNIIGWKGSKVQLIRSQSGADVKI 651
                  66678999**********999998888877 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.019        13     102     127 ..      47      72 ..      41      96 .. 0.84
   2 ?    2.7   0.0      0.03        21       4      39 ..     136     171 ..     133     197 .. 0.71
   3 ?    1.3   0.0     0.081        55       6      38 ..     313     345 ..     308     365 .. 0.75
   4 ?   -4.0   0.0       3.5   2.4e+03       7      33 ..     433     459 ..     430     462 .. 0.66
   5 !    5.9   0.0     0.003       2.1       2      34 ..     620     652 ..     619     673 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.019
    TIGR03665 102 riIGeeGktrkiieeltgvkisvygk 127
                  riIG++G   + ++  tg++i + ++
  MMETSP1174-20130828|16776_1  47 RIIGQGGSNVQAVRADTGAQIKILDR 72 
                  88999999988888888888888764 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.03
    TIGR03665   4 ipkdrigvliGkkgevkkeieektkvkleidseege 39 
                  i ++++g l+Gk+g + + i e+ ++++++  ++ +
  MMETSP1174-20130828|16776_1 136 IRRSQVGCLMGKGGCIIRGIREASGANINVRRDKDV 171
                  667888889999999999999998888888777554 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.081
    TIGR03665   6 kdrigvliGkkgevkkeieektkvkleidseeg 38 
                    ++ vliG++g   + ++ + ++++++ s++ 
  MMETSP1174-20130828|16776_1 313 AWKVPVLIGRNGASIRGLQASSGADIRVLSQRA 345
                  568899999999999999999999999888754 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 3.5
    TIGR03665   7 drigvliGkkgevkkeieektkvklei 33 
                     g l+G +g v++++    +++l++
  MMETSP1174-20130828|16776_1 433 HECGCLMGPRGAVMAQMRAISGAQLHV 459
                  556677777777777777776666654 PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.003
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleid 34 
                  +++p d+ig +iG kg+  + i ++ +++++i 
  MMETSP1174-20130828|16776_1 620 FSVPGDKIGNIIGWKGSKVQLIRSQSGADVKIS 652
                  579999999999999999999999999888876 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1   7.3e+02     313     326 ..      47      60 ..      35      70 .. 0.63
   2 ?    8.0   0.0   0.00038      0.26     288     339 ..     116     169 ..     109     170 .. 0.84
   3 ?   -0.6   0.0      0.17   1.1e+02     302     324 ..     307     329 ..     299     344 .. 0.82
   4 ?    1.3   0.0     0.043        30     242     260 ..     625     643 ..     617     654 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.1
    TIGR01953 313 laiGkeGqNvrLas 326
                    iG++G+Nv+   
  MMETSP1174-20130828|16776_1  47 RIIGQGGSNVQAVR 60 
                  45666666665444 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00038
    TIGR01953 288 kvesvevld..edkksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvktes 339
                  ++ +++++d  ed+ +a+ +++++q+   +Gk+G  +r + + +g +i+v++++
  MMETSP1174-20130828|16776_1 116 RILDLAIQDhaEDAAEARLLIRRSQVGCLMGKGGCIIRGIREASGANINVRRDK 169
                  5666777762245699999*******************************9986 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.17
    TIGR01953 302 aevvveeeqlslaiGkeGqNvrL 324
                  ++ vv++  +++ iG++G+ +r 
  MMETSP1174-20130828|16776_1 307 FRLVVAAWKVPVLIGRNGASIRG 329
                  678999*************9994 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.043
    TIGR01953 242 dpvGacvGqkGsriqaisk 260
                  d +G ++G kGs++q i +
  MMETSP1174-20130828|16776_1 625 DKIGNIIGWKGSKVQLIRS 643
                  6788899999999988754 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00069      0.47     215     246 ..      44      76 ..      27      86 .. 0.84
   2 ?   -5.8   1.1       4.3     3e+03      80      88 ..     269     277 ..     258     284 .. 0.34
   3 ?   -0.2   0.0     0.083        57     219     238 ..     319     338 ..     318     342 .. 0.92
   4 ?   -0.2   0.0     0.083        57     211     245 ..     623     656 ..     613     677 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00069
    TIGR03319 215 mkGRiiGreGRniralEtltGvdl.iiDdtPea 246
                  +  RiiG+ G n++a+ + tG ++ i+D  P++
  MMETSP1174-20130828|16776_1  44 FTHRIIGQGGSNVQAVRADTGAQIkILDRVPQV 76 
                  567********************9667877864 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 4.3
    TIGR03319  80 klekrlkqk 88 
                  +++++ +q+
  MMETSP1174-20130828|16776_1 269 QQQQQQQQQ 277
                  111111111 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.083
    TIGR03319 219 iiGreGRniralEtltGvdl 238
                  +iGr+G  ir l +  G d+
  MMETSP1174-20130828|16776_1 319 LIGRNGASIRGLQASSGADI 338
                  69***************998 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.083
    TIGR03319 211 pndemkGRiiGreGRniralEtltGvdliiDdtPe 245
                  p d++ G iiG +G  ++ + +  G d+ i  +P 
  MMETSP1174-20130828|16776_1 623 PGDKI-GNIIGWKGSKVQLIRSQSGADVKISTSPM 656
                  55554.99********************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.82
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|16780_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 2372.24
//
Query:       MMETSP1174-20130828|16788_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1174-20130828|16787_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 1258.78
//
Query:       MMETSP1174-20130828|16790_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 354.12
//
Query:       MMETSP1174-20130828|16793_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 341.62
//
Query:       MMETSP1174-20130828|16794_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    9.8   3.6       0.23    9.7   2.5    1.0  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.5   5.7e-05      0.23      30      69 ..      16      55 ..       8      57 .] 0.88

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 5.7e-05
    TIGR00531 30 vklkkeaaaakksvlqqaaapvvaqvpavasaavpaaava 69
                  +lkk+ ++ kk++ q+aaa ++a ++a+ +aa  aa+ +
  MMETSP1174-20130828|16794_1 16 TRLKKDLTQQKKTAAQKAAAEKKAAQKAADNAARAAAEKT 55
                 5899***********************9999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       457  (0.111409); expected 82.0 (0.02)
Passed bias filter:                      251  (0.0611897); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.51
# Mc/sec: 147.52
//
Query:       MMETSP1174-20130828|16799_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.51
# Mc/sec: 232.92
//
Query:       MMETSP1174-20130828|16800_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|16802_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 252.98
//
Query:       MMETSP1174-20130828|16809_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.5   3.8     0.0016   15.3   2.6    1.1  1  TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family


Domain annotation for each model (and alignments):
>> TIGR03362  VI_chp_7: type VI secretion-associated protein, VC_A0119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.6     4e-07    0.0016     118     209 ..      19     102 ..      12     136 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-07
    TIGR03362 118 rlvdaletaieasvsaadlaeleealaalaqlaeewledaadklpslaklvealkarlteakneaapaaapaapasakapassasasaapep 209
                  r+ +a+++a++ +v a++  ++  +l++l+q ++++l++ +   p+l k++++l+  +  + +++ ++ ++  +a+++a+a++ ++s   +p
  MMETSP1174-20130828|16809_1  19 RVKRAFDAASKLIVDAESDGRRRRELQRLDQESQRALANFQ---PALEKELKSLRGVA--EIPRIITRIKALRQATSSAAAAAVATS---SP 102
                  5688**********************************986...***********998..888888888888888888888888887...22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|16812_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   27.0   0.0    2.6e-07   26.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.3e-06   23.9   0.1    1.2e-05   22.7   0.1    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.2e-10   2.6e-07      81     185 ..     187     290 ..     155     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.2e-10
    TIGR03903  81 tgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh.....akvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRg.epvta.ksDlYaWGLivleCLtG 185
                   ++++  + Dal+  h   +vhRD+k +ni+v ++++ ++      +++DFGi+    ++ +          e  Gs  +aaPe     e   + k D+++ G  vle + G
  MMETSP1174-20130828|16812_1 187 AVEVLHSITDALTYIHGVEIVHRDVKTENILVRTRNEGQNlvvvnVRLIDFGIACFARDTSAL--------DERCGSKGFAAPEIFGPdEILDPfKIDVWSLGCTVLESIMG 290
                  567788899************************9998875222226789*****999998884........56678888888887754133333366777777777776655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   5.8e-09   1.2e-05      78     141 ..     164     245 ..     103     251 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.8e-09
    TIGR03724  78 yiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk.........ddklyliDfGLgkkske 141
                  ++ g++l +  ++  +         e+l+++ +++  +H  +ivh D+ t+Ni+v+           ++ liDfG++ + ++
  MMETSP1174-20130828|16812_1 164 ELYGTDLYEFNRTPANietrdrnavEVLHSITDALTYIHGVEIVHRDVKTENILVRtrnegqnlvVVNVRLIDFGIACFARD 245
                  55555555554443333444555679*****************************756554333333567999999977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 1545.05
//
Query:       MMETSP1174-20130828|16818_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1000.92
//
Query:       MMETSP1174-20130828|16825_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|16827_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 617.14
//
Query:       MMETSP1174-20130828|16829_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1174-20130828|16826_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-56  187.4   0.0    8.8e-56  187.0   0.0    1.1  1  TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
    0.00013   19.1   0.0    0.00042   17.4   0.0    1.8  2  TIGR00175 mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
    0.00038   17.6   0.0    0.00069   16.8   0.0    1.5  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
    0.00045   17.2   0.0    0.00066   16.6   0.0    1.2  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
     0.0047   13.8   0.0     0.0075   13.2   0.0    1.3  1  TIGR02924 ICDH_alpha: isocitrate dehydrogenase
  ------ inclusion threshold ------
       0.03   12.0   0.2      0.072   10.8   0.1    1.6  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR00127  nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   0.0   1.3e-58   8.8e-56      10     404 ..       2     396 ..       1     401 [. 0.90

  Alignments for each domain:
  == domain 1    score: 187.0 bits;  conditional E-value: 1.3e-58
    TIGR00127  10 veldgdemtriiwelikdklilpyleld.lkyydlsvesrdatndkvtkdaaeaikkynvavkcatitpdearvkefklkkmwkspngtirnilgg.tvfrepiiikriprlvprwekpiiigrhafgdqykatdvvvpgpgklklvykpkd.gaekvdlkvydyeeeggvalamyntdesiedfakaslklalekklplylstkntilkkydg...rfkdifqevyekqyksk..fealgiwyehrliddmvaqalk.skggyilalknydgdvqsdivaqgfgslglmtsvlvt..pdgktv.eaeaahgtvtrhyrkyqkgeetstnsiasifawsrgllkrakldnt.aelvkfaeilesatietveegimtkdlalilkksklersayltteefldaveerlk 404
                  v + g+emt  +  l+ +k i py++    +yydls  +rd+t+d+v + a ea  +     k  titp e + +++ lkk w spng++r   +g t+ r++i i+ i     ++++p++  rha g +y a    v g+g+l  ++ p+d +  ++ +   +  ++  v ++ +n  + + d+a+  +   l+ ++  ++ tk+t++k  +g    +k +f+e y++qy +    e+ g   +h + d    q+++ +kgg+ +a +nydgd+ +d vaq + s g++ts l+    dg  + e ea+hgtv+  +  + +geets n++  i a    + + a+l+   +e+  f+ +l +a  +t ++g  t+d+a           + ltte+f+d+v+er  
  MMETSP1174-20130828|16826_1   2 VYISGEEMTHYVMTLVMEKWIQPYVDTSaWEYYDLSCVNRDNTEDEVLHAAVEAGARVCAIFKEPTITPTEVQKEKLGLKKSWGSPNGAMRRGWNGiTISRDTIHIDGIE---LGFKHPVLFERHAVGGEYGAGWNAV-GKGRLMTTFFPDDaNIAPTIVDARNLADKENVVVVYHNPLDNVPDLAHHFFSRCLKANVVPFVVTKKTVFKWQEGfwtEMKRVFDEDYKQQYLDAglLESCGGELQHLISDAATMQIIRwTKGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIGkrDDGVMIkEFEASHGTVADLWEAHLRGEETSFNPLGMIEAVIGAMNHSADLEGRlPEMDAFTSVLRKALHNTFRKGEGTRDMAGP---------SGLTTEQFIDKVAERQA 396
                  7789**********************86269************************************************************9998868899999888875...699*****************98876.89*********9944566778999***********************************************999833356778888888888654337888888999888888899997589**********************************733588776578*****************************************975499************************9853.........35789999999998755 PP

>> TIGR00175  mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.33   2.2e+02      15      74 ..       6      71 ..       4      84 .. 0.63
   2 !   17.4   0.0   6.2e-07   0.00042     198     332 ..     240     393 ..     178     395 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.33
    TIGR00175 15 Gpeiskavkeifka.akvP.i...efeeidvs.ieteekksealeeavesikknkvaLkGaletpi 74
                 G+e++++v++++ +    P +    +e +d+s ++ ++++ e+l+ ave+  +    +k +  tp+
  MMETSP1174-20130828|16826_1  6 GEEMTHYVMTLVMEkWIQPyVdtsAWEYYDLScVNRDNTEDEVLHAAVEAGARVCAIFKEPTITPT 71
                 555566655543330333322222699999997788888889999999987776666666665555 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 6.2e-07
    TIGR00175 198 kleelivDntclqlvskPeqfdvlvmpnlYGnilsnlaaglvgGaGlvpganvGr..dyvvf..eegvrntak.....diagk.dianPtalllssvlmLnh...l.....glkeyadrikkavletikegkvrtkDlgGsa..ttsdfteavik 332
                  +l++li D +++q++   +    +   n  G++l++  a +   +G ++++ +G+  d v++  +e++++t       ++ g+    nP  ++ + +  +nh   l     +++++++ ++ka ++t ++g+  t+D++G +  tt++f+++v +
  MMETSP1174-20130828|16826_1 240 ELQHLISDAATMQIIRWTKGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIGKrdDGVMIkeFEASHGTVAdlweaHLRGEeTSFNPLGMIEAVIGAMNHsadLegrlpEMDAFTSVLRKALHNTFRKGE-GTRDMAGPSglTTEQFIDKVAE 393
                  4678899********9999888899*****************************733456663357899988833322333431457**************95442333335789**************997.69*****864588999999976 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06   0.00069     193     322 ..     240     390 ..     190     392 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1e-06
    TIGR02088 193 evedllvdsaaiklvkdPekfdvivttnvfGdilsdlaaalvGslGlaPsaniGdkk..al...fePvhGsapdi.....aGkG.ianPlaailsvamlldylgek........ekaklveeavekilkekkvtpdlGGsa..ktkevade 322
                  e++ l+ d+a++++++  +    + ++n  Gd+l+d+ a++  s G++ s  iG +    +   fe  hG+  d+      G     nPl++i +v   ++++  +          ++++++a++++ ++++ t d+ G +  +t+++ d+
  MMETSP1174-20130828|16826_1 240 ELQHLISDAATMQIIRWTKGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIGKRDdgVMikeFEASHGTVADLweahlRGEEtSFNPLGMIEAVIGAMNHSADLegrlpemdAFTSVLRKALHNTFRKGEGTRDMAGPSglTTEQFIDK 390
                  667788899999999987765567899***************************7642222355*********98332223443146*******99988888876644555443345688999999999999*****99642266666665 PP

>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.6e-07   0.00066     213     333 ..     240     377 ..     234     394 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.6e-07
    TIGR00169 213 elehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslss....kglalfepvhgsapdi......agkgianpiaailsaalllryslnlee...aaeaieaavkkvlee....gkrtedla 333
                  el+hl+ D+a+mq+++  +    + ++n  GD+l De + +  s G++ s  +++     + + fe+ hg+  d+       ++   np+++i ++   +++s +le    + +a  ++++k+l++    g+ t+d+a
  MMETSP1174-20130828|16826_1 240 ELQHLISDAATMQIIRWTKGGFGMAAHNYDGDMLTDEVAQVHRSPGFITSNLIGKrddgVMIKEFEASHGTVADLweahlrGEETSFNPLGMIEAVIGAMNHSADLEGrlpEMDAFTSVLRKALHNtfrkGEGTRDMA 377
                  79**************998877889****************************9966444455688999988776221111233456888888887777777776664111344445555555555222244445544 PP

>> TIGR02924  ICDH_alpha: isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05    0.0075     221     348 ..     264     403 ..     234     456 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
    TIGR02924 221 vtenlyGdilsdvvaeisGsvGlaGsaniGee..yam...feavhGsaPdiagkni......anPsGllnaaiqmlvyigqkdiaqliynaflktledGvhta....diykekkskkkvgtkefaeavvenlgkkpeklpkal 348
                    +n  Gd+l+d va++  s G+  s  iG+   + m   fea hG+  d+ + ++       nP G+++a i  + +    +      +af   l++ +h +    +  ++    +  +t++f ++v e+  +   +l++a 
  MMETSP1174-20130828|16826_1 264 AAHNYDGDMLTDEVAQVHRSPGFITSNLIGKRddGVMikeFEASHGTVADLWEAHLrgeetsFNPLGMIEAVIGAMNHSADLEGRLPEMDAFTSVLRKALHNTfrkgEGTRDMAGPSGLTTEQFIDKVAERQAR---YLKEAA 403
                  568999***********************975225666669******9987554432222126**********9999988777666667777777777777530100222223333445566666666655444...444444 PP

>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011     0.072      74     125 ..     395     469 ..     383     476 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR03296  74 ardlvkeala......................ielaqyddfdrydldgdgnfdepdg..lmvvhagegeeagggal 125
                  ++ ++kea +                       e +  d f++yd+d++g ++  d   +mv+h g ++++ gg+ 
  MMETSP1174-20130828|16826_1 395 QARYLKEAAQssedadeetlvpdrryrrnfdvDEDKVKDLFKQYDVDSNGTINF-DEfmIMVHHLGIAPQKIGGSE 469
                  4444444444444444444445555555555446677899*************9.555889999999988877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1287.57
//
Query:       MMETSP1174-20130828|16832_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 782.83
//
Query:       MMETSP1174-20130828|16835_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|16844_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   28.0   0.0    2.3e-07   27.8   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    5.9e-07   26.3   0.0    6.1e-07   26.2   0.0    1.2  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    3.6e-06   24.0   0.0    4.2e-06   23.8   0.0    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.9e-05   21.5   0.0    2.1e-05   21.3   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.3e-10   2.3e-07     280     323 ..      57     100 ..      42     141 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.3e-10
    TIGR01988 280 valiGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedig 323
                    l+GdAAh + P  GQG N  l+D  +La+ la++ + +  +g
  MMETSP1174-20130828|16844_1  57 ATLVGDAAHPMSPFKGQGANQALTDSVRLATWLANSSSFRTAVG 100
                  579*******************************9988775555 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     6e-10   6.1e-07     290     340 ..      45      95 ..       4     147 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 6e-10
    TIGR03219 290 dlaelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkle 340
                  d + l  +     +l+Gdaah m p +G Ga q l d+  la+ l ++   
  MMETSP1174-20130828|16844_1  45 DATGLTPFTTVTATLVGDAAHPMSPFKGQGANQALTDSVRLATWLANSSSF 95 
                  44557777788889*****************************99987643 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   4.1e-09   4.2e-06     332     370 ..      54      92 ..      21     107 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.1e-09
    TIGR01989 332 tervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaea 370
                  t  + LvGDAAH + P  GqG N  ++D   L++ la++
  MMETSP1174-20130828|16844_1  54 TVTATLVGDAAHPMSPFKGQGANQALTDSVRLATWLANS 92 
                  55678***************************9999876 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.1e-08   2.1e-05     279     315 ..      58      97 ..      52     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.1e-08
    TIGR01984 279 vlignaAqtlhPiAgQGfNlGlrDvltLaevledar...k 315
                   l+g+aA+ + P  gQG N+ l D + La  l+++    +
  MMETSP1174-20130828|16844_1  58 TLVGDAAHPMSPFKGQGANQALTDSVRLATWLANSSsfrT 97 
                  589*****************************99863333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 865.26
//
Query:       MMETSP1174-20130828|16846_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 362.03
//
Query:       MMETSP1174-20130828|16849_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.48
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|16845_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1405.51
//
Query:       MMETSP1174-20130828|16850_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 276.35
//
Query:       MMETSP1174-20130828|16854_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|16853_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|16856_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1174-20130828|16863_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 355.80
//
Query:       MMETSP1174-20130828|16867_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.92
# Mc/sec: 199.42
//
Query:       MMETSP1174-20130828|16865_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.8   0.9     0.0073   13.1   0.4    1.5  1  TIGR03356 BGL: beta-galactosidase


Domain annotation for each model (and alignments):
>> TIGR03356  BGL: beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   1.8e-06    0.0073     176     243 ..      60     126 ..      42     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-06
    TIGR03356 176 apglkdlkealkaahhlllahglavkalreaaaeakvgivlnlepvepasdseedvaaaeladallnr 243
                   +g++  +ea++  hhll+++  +v+ +r++a++ + g++l++++++  s+++++ + a+ ++++  +
  MMETSP1174-20130828|16865_1  60 SRGISRGEEATAELHHLLVTKRRTVRWIRAKATA-SRGMALQAKKINDLSEAKRHLRRAHAIERQYDQ 126
                  478899999********************99886.59******************9999988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 691.00
//
Query:       MMETSP1174-20130828|16866_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-27   95.2   3.7    1.3e-27   94.9   0.8    2.1  2  TIGR00297 TIGR00297: TIGR00297 family protein


Domain annotation for each model (and alignments):
>> TIGR00297  TIGR00297: TIGR00297 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.8   3.1e-31   1.3e-27      42     212 ..       6     197 ..       2     203 .. 0.85
   2 ?   -0.0   0.0     0.032   1.3e+02     212     229 ..     220     237 ..     215     243 .. 0.63

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 3.1e-31
    TIGR00297  42 aagfrflllillffvlGslvtkvklekkkekgiaekasgaRslknvlgnglvpllfavliaF..Gveg......dlilalgyvasvaaalaDtlaseiGkleekkprLitt.lkrvekGtdGaisvkGtlagllgalviallgyllG............lislkvllvatlaaivgvlldsllGavlerkky 212
                  a+  rf l++++f+   s  tk+k ++kk  + a k +g+R +  vl+ +l+  ++a++ a   G+++       ++l  +y++  a    Dt ase+G+l+   p L+t+  ++v+kGt+G+is  Gt+a+ +g+l+i+    +l             + +l+ l ++ +a+++g ++ds lGa+++   y
  MMETSP1174-20130828|16866_1   6 AVSTRFGLVLIVFYQSSSFLTKLKSNYKKTLEHAHKEGGQRDYVQVLSCSLIGTILAIAYALleGPDApatserGTALLCAYIGHYACCNGDTWASELGVLDPWTPILVTApWQQVPKGTNGGISLVGTVASAAGGLLIGATFVGLEqwtipgdvsaeaPSQLGFLTLGAAAGLIGSMIDSFLGATMQASYY 197
                  5678999**************************************************98776445432111112346679******************************769*******************999999886665554444435666666788999**********************98776 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.032
    TIGR00297 212 yLtneavnllatlvgaii 229
                   Ltne+vn+ +  ++++i
  MMETSP1174-20130828|16866_1 220 VLTNEQVNMASVGLTTLI 237
                  79******8544333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 881.12
//
Query:       MMETSP1174-20130828|16871_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|16876_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 672.72
//
Query:       MMETSP1174-20130828|16882_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 162.45
//
Query:       MMETSP1174-20130828|16886_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 311.12
//
Query:       MMETSP1174-20130828|16884_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 864.88
//
Query:       MMETSP1174-20130828|16887_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|16894_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|16896_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 532.67
//
Query:       MMETSP1174-20130828|16893_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1125.38
//
Query:       MMETSP1174-20130828|16899_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|16900_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1174-20130828|16901_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|16904_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|16913_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-15   54.0   0.1    2.4e-15   53.8   0.0    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   5.8e-19   2.4e-15     344     465 ..      24     154 ..       1     166 [. 0.76

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 5.8e-19
    TIGR01064 344 lkerknskakkssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvd..........eeeeelekalkkalellkekgilkkgdlvvviqagavleke 465
                  ++++ n     ++  e+va aa+++a   kak+i+ +te+g+tar+++k+rp++p++ +  +  varql+++r  +p+l+            ++++  +++++al++++e g +k gd+vv++ +++  + +
  MMETSP1174-20130828|16913_1  24 YQNQGNPLDLDRQSLESVASAAIRTASDLKAKIIICITEEGSTARAIAKMRPNMPVLTFCGSAAVARQLQFHRALYPMLMPdwsieenwahITSKRSGEIRAEALRTAQEAGWVKAGDQVVIMDTKQGSS-T 154
                  222222233456778999**************************************************************988888866653334446788999**************999988744333.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|16917_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 702.52
//
Query:       MMETSP1174-20130828|16918_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|16919_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-21   72.7   0.1      1e-20   71.6   0.1    1.5  1  TIGR01060 eno: phosphopyruvate hydratase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.1   2.5e-24     1e-20       3     154 ..      54     189 ..      52     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 2.5e-24
    TIGR01060   3 dvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn...alvlPvPllniinGGahad 154
                   ++arevl +   P++e+ v + +g+++  +     + G+       d++ +ry+g+G+ +av  v++vi+++l+G+  l+q  id++l+       + +l  n il+vs+a+++aaak+++l ly+y+++        +P+Pl  +inG   a 
  MMETSP1174-20130828|16919_1  54 GISAREVLSASAMPALETTVRTIQGSFTATT-----TIGS------HDNE-ERYHGRGMRNAVLVVKNVIRKRLVGMT-LQQDLIDEMLMT------EPNLPKNVILTVSMACCRAAAKQANLELYQYIAQLGnvpDPCIPLPLFSVINGADAAS 189
                  6899******************999776432.....3344......4555.8************************96.7899****9985......456888*************************87655223779***********88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 849.13
//
Query:       MMETSP1174-20130828|16920_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|16924_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 681.94
//
Query:       MMETSP1174-20130828|16927_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   11.7   0.3      0.013   11.1   0.2    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   3.3e-06     0.013     518     572 ..     142     196 ..     125     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.3e-06
    TIGR01299 518 glklksvsfkdslfkectfedvtsvntyfknctfidtlfentdleeykfvdselv 572
                    ++    f +++ + + fe  t   + f n+ +  t fen+dl +  f +s l 
  MMETSP1174-20130828|16927_1 142 DSNFDKADFTNAIVDRANFEGSTLKGAVFANAVLTSTSFENADLTDTDFTESALG 196
                  5567788999*****************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 616.85
//
Query:       MMETSP1174-20130828|16931_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    5.6   9.1        1.8    5.6   6.3    1.0  1  TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase)


Domain annotation for each model (and alignments):
>> TIGR00744  ROK_glcA_fam: ROK family protein (putative glucokinase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.3   0.00044       1.8     116     161 ..      10      56 ..       2      60 .] 0.83

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00044
    TIGR00744 116 kkGaGdGakdvilitlG..tGlGGGiiangeilrGhnGagaeiGhirv 161
                    G G+G +dv+   +G   G+G Gi  ++e   G   +ga+iG i  
  MMETSP1174-20130828|16931_1  10 FDGNGEGRDDVVGFGVGklVGIGEGIAEGSEETDGD-EVGADIGRIDG 56 
                  579**********99995559999**9999999996.599****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|16935_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 137.27
//
Query:       MMETSP1174-20130828|16937_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       528  (0.128718); expected 82.0 (0.02)
Passed bias filter:                      336  (0.0819113); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.23s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 178.92
//
Query:       MMETSP1174-20130828|16933_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|16938_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1174-20130828|16942_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1071.75
//
Query:       MMETSP1174-20130828|16949_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.52
# Mc/sec: 1337.66
//
Query:       MMETSP1174-20130828|16954_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 929.54
//
Query:       MMETSP1174-20130828|16952_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   17.7   0.0    0.00066   17.0   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00044   17.6   0.0     0.0013   16.0   0.0    1.7  3  TIGR00406 prmA: ribosomal protein L11 methyltransferase
  ------ inclusion threshold ------
      0.023   12.0   0.1      0.031   11.5   0.1    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.8e-07   0.00066      56     128 ..      54     139 ..      46     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 4.8e-07
    TIGR02021  56 kkvlDAGCG...tGllsielAkrGaivkavDiseklvelarkraekedeaenveFev.........ndlesle.gkfDavvalDvl 128
                   kv+D GCG   +Gl++++l + G  v+  D  +++v+ ar   e++d+   v+  v          +l+  + g+fD  +a Dv+
  MMETSP1174-20130828|16952_1  54 RKVCDLGCGlglAGLVAATLLDPGDSVHLTDGDAAVVNRARVSIEANDTPSTVQASVllwgdeeaqTELNRETvGTFDLCLASDVI 139
                  59*******66667899****************************99998888876544433222245666667889988888876 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.6e-07    0.0013     161     216 ..      54     111 ..      43     128 .. 0.81
   2 ?   -2.9   0.0      0.56   7.6e+02      38      55 ..     159     176 ..     145     191 .. 0.67
   3 ?   -3.4   0.0      0.81   1.1e+03     199     242 ..     206     249 ..     198     254 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.6e-07
    TIGR00406 161 kkviDvGcGSGiLsi.aalklg.aakvvavDiDplavesarkNlelNqvsdllqvkle 216
                  +kv D+GcG G+ ++ aa++l+  ++v+  D D+  v+ ar  +e N+ + ++q  + 
  MMETSP1174-20130828|16952_1  54 RKVCDLGCGLGLAGLvAATLLDpGDSVHLTDGDAAVVNRARVSIEANDTPSTVQASVL 111
                  689********988525555553689***********************999997664 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.56
    TIGR00406  38 llepdlPdekalvedlke 55 
                  ll+p++P+e  l+++++e
  MMETSP1174-20130828|16952_1 159 LLKPEDPQELPLWHQTHE 176
                  566777777777766654 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.81
    TIGR00406 199 rkNlelNqvsdllqvklenleqkiegkaDvivaNilAevikell 242
                  r+N++l  ++d  +    + + ++  + D+ v  i A+   +l+
  MMETSP1174-20130828|16952_1 206 RRNVSLDVLTDAFENAGFEYHIPESLESDGYVEDIFAGRTEDLT 249
                  66666666666666666656667777777777777777666665 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.3e-05     0.031      81     134 ..      47     101 ..      36     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.3e-05
    TIGR03704  81 akersarlvvvdlccGsGavgaalaaalda.velhaadidpaavrcarrnladaG 134
                  +++ + ++ v dl cG G  g+  a+ ld    +h +d d a v+ ar  ++++ 
  MMETSP1174-20130828|16952_1  47 VRPYAPPRKVCDLGCGLGLAGLVAATLLDPgDSVHLTDGDAAVVNRARVSIEAND 101
                  666777889*********99999999987537899*************9998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 765.00
//
Query:       MMETSP1174-20130828|16951_1  [L=1132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-24   81.3   0.0    9.6e-19   64.4   0.0    2.2  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.7e-08   31.0   0.6    0.00077   15.6   0.0    2.3  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.5e-06   23.5   0.2     0.0022   14.6   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
      8e-06   23.0   0.0    4.7e-05   20.5   0.0    2.2  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0035   14.0   0.0      0.052   10.1   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
  ------ inclusion threshold ------
      0.019   11.2   0.0       0.19    7.9   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.4e-21   9.6e-19      12     207 ..     143     314 ..     136     327 .. 0.89
   2 !   14.5   0.0   1.6e-06    0.0011     278     355 ..     498     584 ..     482     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 1.4e-21
    TIGR04121  12 weprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvk 207
                  +++ +fQ e+l+a+ +++s +++apTG+GKT a+ l++  +la       glkv+y tPLkaL+++  r  +++        rv+l tGD+  ++        + +L+ T E +  +l   d  ++++d+ avv+DElH +    RG+  e ++    +  ++l +vglsATv n +++  +  + +    +klv+
  MMETSP1174-20130828|16951_1 143 FDLDSFQLEALQALGTRRSVVVSAPTGSGKTVAGELAIWYALA------LGLKVMYTTPLKALSNQKFRDFRRQYG----AHRVGLLTGDSGVNR-------EAPVLVMTTEVFRNMLY--DDLNMVQDVFAVVLDELHYMNDPSRGTVWEESI---ISAPKSLLIVGLSATVSNAKDIVGWFEHVHG--PTKLVT 314
                  66789********************************999999......8***************99999988764....579*******98654.......4569999******9997..56789************************9775...567889****************999988877..556655 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.6e-06
    TIGR04121 278 eialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkg........vaRllQRiGRsnHr.ldepskill 355
                   +++hH+ +   +++ ve+ ++ag l+++ +T +L  G+   +  +vi   s +g        va +lQ +GR++ r +d++  +++
  MMETSP1174-20130828|16951_1 498 GLGVHHAGMLPLEKTLVEDLFSAGLLKICFATETLAAGINMPARTTVISTLSKRGdngigplsVAQVLQMAGRAGRRgMDQEGAAVI 584
                  5799********************************************9876543333333339**********9884566666555 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-06   0.00077      41     160 ..     149     263 ..     143     265 .. 0.85
   2 !   13.3   0.1   5.6e-06    0.0038     308     422 ..     501     621 ..     478     707 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.1e-06
    TIGR03817  41 qaraaelahaGehvvvatgtasGkslayllPvlsalaedpratalylaPtkalaadqlravkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralry 160
                  q++a ++  + ++vvv++ t sGk++a  l +  ala   + +++y +P kal++ + r  +       r+  + Gd+  ++ + +   ++ v+ n  ml+  +      +a +l +l+y
  MMETSP1174-20130828|16951_1 149 QLEALQALGTRRSVVVSAPTGSGKTVAGELAIWYALAL--GLKVMYTTPLKALSNQKFRDFRRQYG-AHRVGLLTGDSGVNREAPVLVMTTEVFRN--MLYDDLNMVQDVFAVVLDELHY 263
                  777777777889***********************986..6789***************9998665.67899999999998888888888888877..8888888888888888888887 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 5.6e-06
    TIGR03817 308 ayraGylaedrreleralkdGellgvaatnalelGvdisGldavvia.......Gf.PGtvaslwqqaGraGrrg...qdalvvlvarddPldtylvhhPealldkpveatvldPdnPyvlgpqll 422
                   + aG l+ ++  +e+ +++G l+   at++l  G+++    +v+ +       G  P  va + q aGraGrrg   ++a v+l +r d       h    ll kp+ea+v +    y +  +ll
  MMETSP1174-20130828|16951_1 501 VHHAGMLPLEKTLVEDLFSAGLLKICFATETLAAGINMPARTTVISTlskrgdnGIgPLSVAQVLQMAGRAGRRGmdqEGAAVILKSRSDD-----AHSGRDLLLKPIEAIVSHFRPSYGMVAKLL 621
                  5789*********************************998887775433332223246789*************93323466667777664.....466788888999999988777776666664 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.2e-06    0.0022     265     325 ..     168     226 ..     161     237 .. 0.91
   2 !    6.6   0.0   0.00084      0.58     484     555 ..     498     576 ..     470     599 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
    TIGR00643 265 VGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkk 325
                   GsGKTv   la+  +++ G +v    P   L +Q ++++r+ +     +v+lLtg++  +
  MMETSP1174-20130828|16951_1 168 TGSGKTVAGELAIWYALALGLKVMYTTPLKALSNQKFRDFRRQYGA--HRVGLLTGDSGVN 226
                  5******************************************997..69******87655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00084
    TIGR00643 484 nvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeR.......fGlsqLHQLRGRvgRgek 555
                   +++ h+ + + ek  v   F+++ ++i  aT  +  G+++P  t ++   ++R       + ++q  Q+ GR gR   
  MMETSP1174-20130828|16951_1 498 GLGVHHAGMLPLEKTLVEDLFSAGLLKICFATETLAAGINMPARTTVISTLSKRgdngigpLSVAQVLQMAGRAGRRGM 576
                  567889999999********************************999998888877665556689**********9543 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.9e-08   4.7e-05       2      62 ..     162     220 ..     161     230 .. 0.87
   2 ?   -1.2   0.0      0.27   1.8e+02     127     176 ..     255     306 ..     224     321 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.9e-08
    TIGR01587   2 lvieAPtGyGKteaallwalklikkqkadkvifalPtratanamyerlkelfgselvlllk 62 
                  +v+ APtG+GKt a+ l  +++       kv+++ P++a++n   + ++  +g   v+ll 
  MMETSP1174-20130828|16951_1 162 VVVSAPTGSGKTVAGELAIWYA--LALGLKVMYTTPLKALSNQKFRDFRRQYGAHRVGLLT 220
                  89**********9999999996..67899*******************9999997777765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.27
    TIGR01587 127 vliiDEvhayeeytkalllallevlkdvdvkillmsAtlp..kllkeyleki 176
                   +++DE+h++++  ++ +     + + +   i+ +sAt++  k +   +e++
  MMETSP1174-20130828|16951_1 255 AVVLDELHYMNDPSRGTVWEESIISAPKSLLIVGLSATVSnaKDIVGWFEHV 306
                  489*******999998877666666666666777888887666666666665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.036        25      14      63 ..     147     199 ..     136     251 .. 0.78
   2 !   10.1   0.0   7.7e-05     0.052     255     361 ..     501     617 ..     491     643 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.036
    TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvi...sPLisL 63 
                  + qle+++a  + r ++v  +tG Gk +   l+  +   l+l +   +PL +L
  MMETSP1174-20130828|16951_1 147 SFQLEALQALGTRRSVVVSAPTGSGKTVAGELAIWYALALGLKVmytTPLKAL 199
                  45899999988888999999******999888877777666644222566666 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 7.7e-05
    TIGR00614 255 aYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihysl........pksiesYYqesGRaGRDglkse..cvlfyapaDvallrrllveekdekkreyklkllekv 361
                   +hag+   +++ v+  f++  +++  at     Gin p    vi            p s+ +  q +GRaGR g+  e  +v++ + +D a + r l+ ++ e   ++ +  + +v
  MMETSP1174-20130828|16951_1 501 VHHAGMLPLEKTLVEDLFSAGLLKICFATETLAAGINMPARTTVISTLSkrgdngigPLSVAQVLQMAGRAGRRGMDQEgaAVILKSRSDDAHSGRDLLLKPIEAIVSHFRPSYGMV 617
                  68*************************************9888886532111122235689999*********99865422555555555555544444455555555555555555 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.076        52      17      51 ..     148     182 ..     135     213 .. 0.69
   2 ?    7.9   0.0   0.00028      0.19     253     325 ..     501     581 ..     492     642 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.076
    TIGR01389  17 gqeeiieevldgrdvlavlPtGGGkslCYqvPaLl 51 
                   q e ++++ ++r+v++  PtG Gk +   +   +
  MMETSP1174-20130828|16951_1 148 FQLEALQALGTRRSVVVSAPTGSGKTVAGELAIWY 182
                  57788899999**************9987665443 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00028
    TIGR01389 253 aYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldl........PknlesyyqeaGRaGRDGlkaeai 325
                   +haG+   ++    + F     k+  at     Gi+ +    vi +          P ++ +  q aGRaGR G   e+ 
  MMETSP1174-20130828|16951_1 501 VHHAGMLPLEKTLVEDLFSAGLLKICFATETLAAGINMPARTTVISTLSkrgdngigPLSVAQVLQMAGRAGRRGMDQEGA 581
                  68*************************************999999763222233445999***************887643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.20s 00:00:01.07 Elapsed: 00:00:00.85
# Mc/sec: 1757.78
//
Query:       MMETSP1174-20130828|16961_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 242.86
//
Query:       MMETSP1174-20130828|16962_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|16966_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    8.4   3.6      0.071    9.2   1.4    1.3  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.4   1.7e-05     0.071     619     671 ..      70     122 ..      54     141 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.7e-05
    TIGR01073 619 leanipsrfleeipdelletkstgereatsakaaslsrkkqasrktasqakae 671
                  +  ++ps fl+  p++ +   ++++++ +++k++ + +k+++s +++s+++++
  MMETSP1174-20130828|16966_1  70 PPEDPPSMFLDRCPEDQVRVVREKRKQRSNEKSVGKRKKRKRSVSSSSSSSSS 122
                  56789*************99999887777777775554444444443333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 814.69
//
Query:       MMETSP1174-20130828|16969_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   20.0   0.0    0.00025   19.0   0.0    1.6  1  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
     0.0014   16.5   0.0     0.0024   15.7   0.0    1.4  1  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
     0.0024   15.7   0.1     0.0067   14.3   0.0    1.7  2  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
     0.0025   14.6   0.0     0.0038   13.9   0.0    1.2  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
  ------ inclusion threshold ------
      0.043   10.3   0.0      0.081    9.4   0.0    1.4  1  TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.1e-07   0.00025       1      85 [.      46     126 ..      46     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.1e-07
    TIGR02378   1 twqavckleelpeesgvavklddeqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcledd 85 
                  tw+ ++++ el ++  + ++   ++   ++ + +++  ++++cPh+  ++ls+G v  +    v  c +h ++f+ ++G+c+  +
  MMETSP1174-20130828|16969_1  46 TWVPIASTYELDPDRPTPIEFLGQNYVTYQDNSEQWVVLDDVCPHR-LAPLSEGRVDRDA--NVLQCSYHGWEFD-SSGRCTRIP 126
                  6999999999999999999999999999*****************9.88******98776..899*********9.567666543 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.9e-06    0.0024       2      80 ..      47     126 ..      46     137 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.9e-06
    TIGR02377   2 wvkackaddieredvirfdhggrtfaiyrsaddeyyatdglcthekvhladglved..tevecpkhagafdyrtgealrap 80 
                  wv   ++ +++ +     +  g+ +  y+   +++ + d++c h  + l++g v    ++++c  h   fd  +g + r p
  MMETSP1174-20130828|16969_1  47 WVPIASTYELDPDRPTPIEFLGQNYVTYQDNSEQWVVLDDVCPHRLAPLSEGRVDRdaNVLQCSYHGWEFDS-SGRCTRIP 126
                  888888888888888888999********************************974114689****999995.45555555 PP

>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.2e-06    0.0067     100     153 ..      72     125 ..      56     134 .. 0.80
   2 ?   -3.7   0.0       2.7   2.2e+03      55      72 ..     325     342 ..     321     348 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8.2e-06
    TIGR01416 100 relrsgkeewlvvigiCtH.LGCiPtlkpeegdkggffCpCHgskydlagrvvkg 153
                   ++++++e+w+v+  +C H L+     +   +d ++  C  Hg ++d++gr ++ 
  MMETSP1174-20130828|16969_1  72 VTYQDNSEQWVVLDDVCPHrLAPLS-EGRVDRDANVLQCSYHGWEFDSSGRCTRI 125
                  46778899***********444333.34466779*****************8765 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.7
    TIGR01416  55 lltvewrgkpvfilrrtk 72 
                  l+ v + + pv+++++ +
  MMETSP1174-20130828|16969_1 325 LISVVFSKLPVWLVHQLS 342
                  678899999***999755 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.7e-06    0.0038      72     121 ..      79     129 ..      46     143 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.7e-06
    TIGR03229  72 gelnalinacshrgamlcrhkrgnka.tytcpfhgwtfnnsgkllkvkdpe 121
                  ++  +l + c hr a l+  + +  a  + c +hgw f+ sg+  ++ +  
  MMETSP1174-20130828|16969_1  79 EQWVVLDDVCPHRLAPLSEGRVDRDAnVLQCSYHGWEFDSSGRCTRIPQAT 129
                  445566689********9888776541689************998886655 PP

>> TIGR03228  anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   9.8e-05     0.081      63     124 ..      70     132 ..      43     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.8e-05
    TIGR03228  63 plivtrdgegelhalvnacehrgatlt..rvgkgnqsvftcpfhawcyksdgrlvkvkapgeya 124
                    +  +d   +   l + c hr a l   rv + +  v+ c +h w + s gr  ++    +  
  MMETSP1174-20130828|16969_1  70 NYVTYQDNSEQWVVLDDVCPHRLAPLSegRVDR-DANVLQCSYHGWEFDSSGRCTRIPQATQEV 132
                  55666788888889999*******997335554.56799**************99885444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1923.84
//
Query:       MMETSP1174-20130828|16975_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|16980_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|16988_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|16986_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1263.90
//
Query:       MMETSP1174-20130828|16987_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|16991_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 258.48
//
Query:       MMETSP1174-20130828|16992_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|16995_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.1   0.0      0.041   11.8   0.0    1.2  1  TIGR02892 spore_yabP: sporulation protein YabP


Domain annotation for each model (and alignments):
>> TIGR02892  spore_yabP: sporulation protein YabP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     1e-05     0.041      31      54 ..      32      55 ..      23      58 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1e-05
    TIGR02892 31 telGllvikGeeLkikkLdveeGe 54
                  ++G+lv++G  +  k L++eeG+
  MMETSP1174-20130828|16995_1 32 GTMGYLVLRGTVVLFKLLNLEEGD 55
                 58********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|16996_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-08   28.9   0.2    1.9e-05   20.7   0.1    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
  ------ inclusion threshold ------
      0.042   11.5   0.2      0.048   11.3   0.1    1.1  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00011      0.22     135     158 ..       2      25 ..       1      29 [. 0.89
   2 !   20.7   0.1   9.5e-09   1.9e-05     127     153 ..      27      53 ..      25      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00011
    TIGR00870 135 lilAihkqnyeivklLlekgasve 158
                  l +A   + +e+vk L+e++a+v+
  MMETSP1174-20130828|16996_1   2 LLMASGYDHLEVVKFLVENKADVN 25 
                  677888999*************97 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 9.5e-09
    TIGR00870 127 eftkgitalilAihkqnyeivklLlek 153
                  e  +g t+l++A+h++n+ iv+ L++ 
  MMETSP1174-20130828|16996_1  27 ENLEGTTPLHIAAHQNNLDIVEFLVKH 53 
                  56789*******************975 PP

>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.4e-05     0.048       7      34 ..      24      50 ..      18      61 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.4e-05
    TIGR00530  7 vgkenlpkkkavlvvanHqsnlDiltls 34
                 v+kenl+     l +a Hq+nlDi+ + 
  MMETSP1174-20130828|16996_1 24 VNKENLE-GTTPLHIAAHQNNLDIVEFL 50
                 7899999.78889***********9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|16994_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.029   11.4   0.0    1.1  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A


Domain annotation for each model (and alignments):
>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-06     0.029      99     166 ..      54     122 ..      45     128 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-06
    TIGR02875  99 lGadyyvlkpfdleilaarirqlaektvkdikassstvlsaskae.ktldleaeiteiihelGvpahik 166
                  +Ga   v     le l+a + +la ++ kd+k+++ t ++   a   + +l++ i++ i   Gv +hi 
  MMETSP1174-20130828|16994_1  54 VGATAAVYAAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIrGDEELDTLIKATIAGGGVIPHIH 122
                  4666667777789******************9998877765544438999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1174-20130828|16998_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 587.95
//
Query:       MMETSP1174-20130828|17001_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 225.16
//
Query:       MMETSP1174-20130828|17005_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|17006_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|17004_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.47
# Mc/sec: 876.18
//
Query:       MMETSP1174-20130828|17010_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|17013_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.44
# Mc/sec: 101.99
//
Query:       MMETSP1174-20130828|17008_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.1   0.1      0.024   11.2   0.0    2.0  2  TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD


Domain annotation for each model (and alignments):
>> TIGR03920  T7SS_EccD: type VII secretion integral membrane protein EccD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0041        17      59      78 ..      42      61 ..      37      65 .. 0.91
   2 !   11.2   0.0     6e-06     0.024      52      81 ..     142     171 ..      87     178 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0041
    TIGR03920 59 dldasLdeagVvDGdlLvLr 78
                 d+++sL++ g++DG+ L Lr
  MMETSP1174-20130828|17008_1 42 DESRSLSDYGIEDGSELGLR 61
                 789************99887 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 6e-06
    TIGR03920  52 rlggppldldasLdeagVvDGdlLvLrpvs 81 
                   l++++ld+++sL+  gV+DG+ L L+  s
  MMETSP1174-20130828|17008_1 142 NLTRQALDESLSLSSIGVQDGSELLLKVLS 171
                  57899*******************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 869.41
//
Query:       MMETSP1174-20130828|17017_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.80
# Mc/sec: 79.19
//
Query:       MMETSP1174-20130828|17020_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|17021_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 153.28
//
Query:       MMETSP1174-20130828|17024_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   23.9   0.0      9e-06   23.0   0.0    1.6  1  TIGR00068 glyox_I: lactoylglutathione lyase
    0.00017   18.8   0.0    0.00043   17.5   0.0    1.7  2  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase
     0.0095   12.9   0.0      0.014   12.4   0.0    1.3  1  TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00068  glyox_I: lactoylglutathione lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.6e-09     9e-06      21     135 ..      53     160 ..      34     162 .] 0.79

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.6e-09
    TIGR00068  21 tmlrvgdldksldfytevlGmkllrkkdfpeekfslaflgyedessa..avieLtynwgtekydlGngfGhiaiavddvykacervkakGgkvvrepgpvkggtkviafvkDPDGyk 135
                    +r  d+  +  fy+e lGmk + ++d++       +l y   s+    ++ +t   + +  d G +  h+ +av dv +a   +k++G+    ep  +     ++    DPDG  
  MMETSP1174-20130828|17024_1  53 FCIRSSDMGVTSAFYAEALGMKDIGRSDNE------VYLRYRRGSTGvpITLVITEPPEDDALDRGDALDHLVVAVSDVESAAVCLKSAGAPAG-EP--MTMFGVKMVKTSDPDGLD 160
                  568999**********************86......46788777777335666788888888*************************9998653.44..333333444567888865 PP

>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.2e-07   0.00043      10      41 ..      55      86 ..      50     105 .. 0.92
   2 ?   -2.4   0.0      0.36   4.9e+02     145     161 ..     114     130 ..     111     135 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.2e-07
    TIGR03211 10 lrvldleealkfykdvlGleetgrdeqsvYlk 41
                 +r+ d+  +  fy + lG++  gr++++vYl+
  MMETSP1174-20130828|17024_1 55 IRSSDMGVTSAFYAEALGMKDIGRSDNEVYLR 86
                 8999***************************9 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.36
    TIGR03211 145 rldHvlllaedveenvk 161
                   ldH+++  +dve+++ 
  MMETSP1174-20130828|17024_1 114 ALDHLVVAVSDVESAAV 130
                  69999999999988765 PP

>> TIGR02295  HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     1e-05     0.014       8      86 ..      53     137 ..      50     161 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1e-05
    TIGR02295   8 velvvtDLeksrefYseilGlreeekdkeaiylRgieefq..hhsLvLkkapaa.al...kalafrvseeedldkladllkelGl 86 
                   +++ +D+  +  fY e+lG++   + ++++ylR     +    +Lv+++ p+  al   +al + v +  d++ +a  lk+ G 
  MMETSP1174-20130828|17024_1  53 FCIRSSDMGVTSAFYAEALGMKDIGRSDNEVYLRYRRGSTgvPITLVITEPPEDdALdrgDALDHLVVAVSDVESAAVCLKSAGA 137
                  578899999***********************98654333114566666655431332223455555666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|17027_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|17026_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 638.54
//
Query:       MMETSP1174-20130828|17031_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|17034_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1013.21
//
Query:       MMETSP1174-20130828|17036_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-05   19.5   0.0    8.6e-05   19.5   0.0    1.0  1  TIGR00261 traB: TraB family protein


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.1e-08   8.6e-05      15      49 ..       2      36 ..       1      62 [. 0.85

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.1e-08
    TIGR00261 15 skksveevaeviesvkPdaiavelderryhslvtt 49
                 skks e v  vi  vkP ++ vel++ r  +l ++
  MMETSP1174-20130828|17036_1  2 SKKSGELVRSVITEVKPKTVFVELCDERAKALWRQ 36
                 9***************************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|17037_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 195.63
//
Query:       MMETSP1174-20130828|17030_1  [L=2093]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2093 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.17s 00:00:01.36 Elapsed: 00:00:01.11
# Mc/sec: 2488.77
//
Query:       MMETSP1174-20130828|17038_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|17039_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1033.16
//
Query:       MMETSP1174-20130828|17040_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 796.19
//
Query:       MMETSP1174-20130828|17045_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 875.30
//
Query:       MMETSP1174-20130828|17051_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1174-20130828|17053_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1262.15
//
Query:       MMETSP1174-20130828|17054_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|17061_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|17058_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-27   92.4   0.0    9.1e-27   92.0   0.0    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    4.2e-19   66.9   0.0    5.8e-19   66.5   0.0    1.1  1  TIGR01929 menB: naphthoate synthase
    3.1e-18   63.3   0.0    3.9e-18   63.0   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    1.7e-15   54.9   0.0    2.8e-15   54.2   0.0    1.2  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    2.2e-15   53.8   0.0    2.7e-15   53.5   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    3.5e-15   52.9   0.0    4.5e-15   52.6   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    2.5e-14   51.0   0.1    4.1e-14   50.3   0.1    1.3  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    8.2e-08   29.5   0.0    1.3e-07   28.8   0.0    1.2  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    6.9e-05   19.6   0.1     0.0029   14.2   0.0    2.3  2  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0     2e-29   9.1e-27       9     231 ..      57     283 ..      53     293 .. 0.88

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 2e-29
    TIGR02280   9 vlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrl.......aalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtqldlerdlqre 231
                  ++ +tlnr +k ns++  m   + ea e v+  + vra++l G G+ fcaG d++     ++++ +lG+++++  + lv +        ++lp+pv++   G+  G G ++al++d  +++ + +f    ak Gl+pd  G+ ll  lv    ak l++++  ++  +a+e+Gl+ +v +   + +++  la+++a+    +++  k  ++++        l+le ++q++
  MMETSP1174-20130828|17058_1  57 LAVVTLNRGKKYNSLDLAMFDGIVEAAETVRGMSgVRAVVLRGDGKVFCAGLDVKSMG--SNPVKNLGRLLHRPEGRLVNLAqevawvwRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSE-TPY-EDAVRLAQEIAERSPDAVSGAKLLFNSTWDAPEPRALELETEIQKK 283
                  5789***************************9877****************9997765..5567899999999888888653222222378************************************************************************************88754.344.5566799999999999999999999988888888888888888876 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.3e-21   5.8e-19      10     219 ..      54     267 ..      45     275 .. 0.89

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.3e-21
    TIGR01929  10 edaiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGe......srlnvl..evqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadld 219
                  + ++a ++++r k +n++     d ++ea ++ r  s +  v+l G+G k fc+G d k  g++  k+  G+      +rl  l  ev  + r lp pvia+  G + GGG  + +  d+  ++ +  f   ++k G      Gs  l  +v    a+e+ +++r ++ ++a++ Glv +v e+    +++v++a+ei ++sp a+   k  +n   d
  MMETSP1174-20130828|17058_1  54 FSSLAVVTLNRGKKYNSLDLAMFDGIVEAAETVRGMSGVRAVVLRGDG-KVFCAGLDVKSMGSNPVKN-LGRllhrpeGRLVNLaqEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSETP--YEDAVRLAQEIAERSPDAVSGAKLLFNSTWD 267
                  667899****************************************98.79******99888776554.44446665566654434789999****************************************************************************************98765..4679****************99999998877 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   8.5e-21   3.9e-18      19     189 ..      59     234 ..      46     258 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 8.5e-21
    TIGR02437  19 elvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellq.....wleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvk 189
                   ++++     n ld a +  + +a ++++  s++++++l+ d ++f  G d+  + ++  k+  +ll+      ++ a++v     +lp+p +a+ +G+++GGGl++ l +dfr ++ + +  + e+k G++p + G+v l  l+ +d a e+  + +     +a   glv  v +
  MMETSP1174-20130828|17058_1  59 VVTLNRGKKYNSLDLAMFDGIVEAAETVRGMSGVRAVVLRGDGKVFCAGLDVKSMGSNPVKNLGRLLHrpegrLVNLAQEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSE 234
                  555666667899999999**********************************98877666655555431111135667777777889*********************************************************************99999999999999988865 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   6.2e-18   2.8e-15      12     213 ..      57     264 ..      52     271 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 6.2e-18
    TIGR03210  12 vatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqsthdgn...ydgr......gviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnv 213
                  +a++++nr +k+n++     d +++a +       + ++vl g g k fc+g d  +   n     gr      g +    +e+    r+++ pvia  +g + ggg  ++  +d+  ++  + +  +  k g v    g+ ll  +v    a+e+   +r +s+++a+  glv  v      da   + ++ei e+sp a++ ak  fn 
  MMETSP1174-20130828|17058_1  57 LAVVTLNRGKKYNSLDLAMFDGIVEAAETVRGMSGVRAVVLRGDG-KVFCAGLDVKSMGSNpvkNLGRllhrpeGRLVNLAQEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSETPYEDA--VRLAQEIAERSPDAVSGAKLLFNS 264
                  7999***************************9***********98.89****997654433111334322223344545567888999***************************************************************************************9987666666..4789***************99995 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.9e-18   2.7e-15      11     184 ..      57     233 ..      47     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 5.9e-18
    TIGR02440  11 iailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqk.g......qellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvv 184
                  +a++t++  g+k n+l  ++ d + e  + ++  + +r +vl  g    f ag d++ +++    +  + l +  g      qe+    + lp++v+a  hg c+gggl++al    r  + d    + + e + gl+p   g+  l  lv +  a ++ +t + +   qa++ glv +v 
  MMETSP1174-20130828|17058_1  57 LAVVTLN-RGKKYNSLDLAMFDGIVEAAETVRGMSGVRAVVL-RGDGKVFCAGLDVKSMGSNPVKNLGRLLHRPeGrlvnlaQEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADC--EFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVS 233
                  6677776.5899**************************9876.678889*********9999888888887764131100003333344679****************************9996..57899**********************************************9985 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   9.8e-18   4.5e-15      22     206 ..      56     244 ..      34     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 9.8e-18
    TIGR02441  22 dvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsre.......aqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvd.plGpGlkpa 206
                   +avv ++    k n+l+ ++++ + e  + ++    v++ v++ +    f aG d++ + +    +   +l r        aq++     +   p++a  +G c+GGGl++al  ++r +t d    +++ e   Gl+p   g++ l  lvs++ a +l++t +     +ak  Glv ++ + p  + ++ a
  MMETSP1174-20130828|17058_1  56 SLAVVTLNRG-KKYNSLDLAMFDGIVEAAETVRGMSGVRA-VVLRGDGKVFCAGLDVKSMGSNPVKNLGRLLHRPegrlvnlAQEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADC--EFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSEtPYEDAVRLA 244
                  5688888865.699************************96.5678999**********9988877766666555411111115555555666789****************************96..58999**********************************************999754666666655 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1     9e-17   4.1e-14      14     192 ..      60     250 ..      46     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 9e-17
    TIGR03189  14 lrlarp.kanivdaamiaalraalgealeaaalravlldaegphfsfgasveehmpdqcaamlkslhk....lv...ieml....dspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfap.aascllpervgkvaaedllysgrsidgaegariglvdavaedpeaaalayfdehlakl 192
                  + l r  k n +d am   + +a       + +rav+l  +g  f  g  v+    +   ++ + lh+    lv   +e+     + p+p++    g c+gggl++a+  ++ f++ d+ +   e k g+    + s ll e v+  +a++l  + r  +ga+++  glv+ v+e p + a++  +e +a+ 
  MMETSP1174-20130828|17058_1  60 VTLNRGkKYNSLDLAMFDGIVEAAETVRGMSGVRAVVLRGDGKVFCAGLDVKSMGSNPVKNLGRLLHRpegrLVnlaQEVAwvwrELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDmSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSETPYEDAVRLAQE-IAER 250
                  56777515799************9999************************987777777776777743333331113321333489******************************************875426799*******************************************997655.4444 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.9e-10   1.3e-07      39     209 ..      58     232 ..      53     245 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.9e-10
    TIGR03200  39 awiildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqe..y...rqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdv 209
                  a ++l+  k+yns    m  +i+ a ++      v avv+ + g k fc+g + k   +   +n     +   ++ ++l +++     +   pvi+   g+  ggg +i + ad+  +    +f     k g  ++   + +l  +++++ a   +++   fs  +ak+ g++ +v
  MMETSP1174-20130828|17058_1  58 AVVTLNRGKKYNSLDLAMFDGIVEAAETVRGMSGVRAVVLRGDG-KVFCAGLDVKSMGSNPVKNLGRllHrpeGRLVNLAQEVAWVWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKWGLVPDMSGSVLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHV 232
                  5689************************************9987.99**********99988886542231113445555555556667889***************************99***************99999******************************99887 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.4e-06    0.0029      41     227 ..      67     248 ..      59     253 .. 0.70
   2 !    6.1   0.0    0.0018      0.84     446     495 ..     214     259 ..     196     280 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.4e-06
    TIGR03222  41 klnsydlGvdieladalqrlrfehpevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetr..n.gieda..seesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaela 227
                  k ns dl +   + +a + +r     vr+vvl+ +  kvfcaG ++k +g    +  +       e r  n + e a   +e  l  +a+ +G + GGG ++al +d  +   d + ++   +    +++p   G   v  +  v  d a  +  +     G +ake+ lv +v + + +++av   a+e+a
  MMETSP1174-20130828|17058_1  67 KYNSLDLAMFDGIVEAAETVRG-MSGVRAVVLR-GDGKVFCAGLDVKSMGSNP-VKNLGRLLHRPEGRlvNlAQEVAwvWRELPLPVIAVTHGICFGGGLQIALGADFRFSTADCEFSIMEAKW---GLVPDMSGS--VLLRELVSIDVAKELTMTARVFSGAQAKEYGLVSHVSE-TPYEDAVR-LAQEIA 248
                  7788888888888888888885.5689**9997.679**********998654.444444444555553231223331146777899********************99988888777665554...445555553..45566788888888888888889999999999988754.44444442.344444 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0018
    TIGR03222 446 iGealdaaeaeklglvtaalddidwedeirilleeraslspdaltGlean 495
                  + + ++ a+a+++glv+ +  +  +ed +r++ +e a  spda++G    
  MMETSP1174-20130828|17058_1 214 TARVFSGAQAKEYGLVSHVS-ETPYEDAVRLA-QEIAERSPDAVSGA--K 259
                  456678899*******9876.679******98.678999*****994..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 986.92
//
Query:       MMETSP1174-20130828|17057_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 988.31
//
Query:       MMETSP1174-20130828|17069_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 785.34
//
Query:       MMETSP1174-20130828|17065_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1493.56
//
Query:       MMETSP1174-20130828|17070_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1174-20130828|17071_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 221.28
//
Query:       MMETSP1174-20130828|17074_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|17075_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|17080_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|17081_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.57
# Mc/sec: 184.33
//
Query:       MMETSP1174-20130828|17083_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|17084_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|17085_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|17086_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|17090_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 645.80
//
Query:       MMETSP1174-20130828|17092_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|17088_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.6   0.0    1.8e-05   22.7   0.0    2.1  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2     0.059   2.4e+02      34      82 ..     100     145 ..      95     156 .. 0.52
   2 !   22.7   0.0   4.4e-09   1.8e-05      27     102 ..     403     477 ..     401     482 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.059
    TIGR00229  34 feeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerr 82 
                   e+ fG +++e+   ++ +l  e +r ++ ++  rr++ + ++  +e++
  MMETSP1174-20130828|17088_1 100 SEKSFGTTPDEASRLHLKQL--EKQRRAHNAKETRRRK-KAKVDAMEHE 145
                  56666666666666666663..3444444433333333.3345555544 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 4.4e-09
    TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird 102
                  i +vN +++ +fGYs +e++G +++ +  +  ++ v + ++++ e  r+p s++++++rkdG+   v v++ p+ d
  MMETSP1174-20130828|17088_1 403 ISHVNSSWCGLFGYSLAEVRGCTLRCMEGPQTSDTVMAAFKTDCE-ARRPSSMNVTLYRKDGTGLDVFVRLCPLLD 477
                  779***********************99999************99.669*************99988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 1768.65
//
Query:       MMETSP1174-20130828|17096_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|17103_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|17102_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 802.93
//
Query:       MMETSP1174-20130828|17095_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   37.6   0.1      7e-05   19.1   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.6e-07   26.1   0.0     0.0021   13.7   0.0    2.6  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.5e-06   25.0   0.0    0.00046   16.8   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
      1e-05   22.0   0.1    0.00012   18.5   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    0.00014   18.6   0.0      0.023   11.3   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
  ------ inclusion threshold ------
      0.093    9.6   0.1       0.94    6.3   0.0    2.1  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
        0.2    7.2   0.0       0.27    6.8   0.0    1.1  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.7e-07   0.00051      22      83 ..      11      72 ..       9     111 .. 0.89
   2 !   19.1   0.0   1.2e-07     7e-05     316     382 ..     577     643 ..     569     647 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.7e-07
    TIGR03817 22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedprat 83
                  p++v+a+++ G   p   q ++  l   G +v+va++t sGk+ a+ lP+++++ e +r+ 
  MMETSP1174-20130828|17095_1 11 MPELVRAVHELGWLLPSDVQDETIPLILGGGDVMVAASTGSGKTAAFGLPIIQSTYERRRNF 72
                 58999************************************************999998765 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.2e-07
    TIGR03817 316 edrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                   +rre  +a+kdG+++ + +t+    G+di Gl  vv    P     +  ++Gr Gr+ +  l+v +
  MMETSP1174-20130828|17095_1 577 KERRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDMPENYVHRIGRVGRAERMGLAVSI 643
                  6899999*******************************************************99966 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   6.9e-05     0.041      14      56 ..      26      68 ..      16     103 .. 0.81
   2 ?   -2.2   0.0      0.23   1.3e+02      63     153 ..     291     380 ..     279     414 .. 0.81
   3 !   13.7   0.0   3.5e-06    0.0021     287     356 ..     575     644 ..     517     659 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.9e-05
    TIGR04121 14 prafQkevleaaeegesglliapTGaGKTlavflpslielaak 56
                 p + Q e++  +  g + ++ a+TG+GKT a  lp++ ++ ++
  MMETSP1174-20130828|17095_1 26 PSDVQDETIPLILGGGDVMVAASTGSGKTAAFGLPIIQSTYER 68
                 678899999999*******************999999888733 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.23
    TIGR04121  63 lkvlyitPLkaLakdieraleapieelgle.irvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLl 153
                    ++ + P + La++++ ++e+  + ++ + i+  l  G  + ++ a + k   di++ Tp  +  l+ +++ ++  ++++  ++DE   Ll
  MMETSP1174-20130828|17095_1 291 PSAIILEPARDLAEQVSTNIESFTKFVSSPtIKHVLLIGGEDGRKAASKLKGGVDIVVGTPGRVVDLIKQEKVTT--STVQFFILDEADRLL 380
                  556777899999999999999988887765245555667777777788889999999999999999998877654..789999999987776 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 3.5e-06
    TIGR04121 287 dkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillv 356
                  + ++R++  aa+k+g++r+++cT     G+D + +  v+++  p      + RiGR + +      + +v
  MMETSP1174-20130828|17095_1 575 SMKERRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDMPENYVHRIGRVGRAERMGLAVSIV 644
                  567899999************************************9999999999988665554444444 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0016      0.96     283     368 ..     289     378 ..     286     379 .. 0.74
   2 !   16.8   0.0   7.8e-07   0.00046     477     562 ..     559     643 ..     552     652 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
    TIGR00643 283 sGyqvalmaPTeiLAeQhyeklrellepl...gievalLtgslkkkkkkelleeiasGeielvvGTha....ll.qekvefkeLalviiDEQhr 368
                  +G  + ++ P   LAeQ   +++++ + +   +i+  lL g   +   +++  +++ G +++vvGT      l+ qekv  + +++ i DE  r
  MMETSP1174-20130828|17095_1 289 AGPSAIILEPARDLAEQVSTNIESFTKFVsspTIKHVLLIGGEDG---RKAASKLK-GGVDIVVGTPGrvvdLIkQEKVTTSTVQFFILDEADR 378
                  5777889999999****8777665544334449999999998655...45667787.99*******6533334438999999999999999877 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 7.8e-07
    TIGR00643 477 kkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLv 562
                  k + +++++ ++ g  + +e+ e l++F++++v +L++T v   G+d+  +  +v +    +     H + GRvgR e+ + ++ +
  MMETSP1174-20130828|17095_1 559 KGKENRYSCCVMSGMRSMKERRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDMPENYVHRI-GRVGRAERMGLAVSI 643
                  45668999*******************************************9999999999999999998.9****9998877655 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.042        25      17      48 ..      29      60 ..      21      65 .. 0.90
   2 !   18.5   0.0     2e-07   0.00012     256     319 ..     571     635 ..     556     658 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.042
    TIGR01389 17 gqeeiieevldgrdvlavlPtGGGkslCYqvP 48
                  q+e i  +l g dv++   tG Gk   + +P
  MMETSP1174-20130828|17095_1 29 VQDETIPLILGGGDVMVAASTGSGKTAAFGLP 60
                 69999********************9999888 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2e-07
    TIGR01389 256 aGl.skkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDG 319
                  +G+ s+k+R e++ +F   dv++++ t     Gid     fv+ + lP   e+y    GR GR  
  MMETSP1174-20130828|17095_1 571 SGMrSMKERRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDMPENYVHRIGRVGRAE 635
                  4552789*************************************************999999864 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0031       1.8      15      48 ..      29      62 ..      22      66 .. 0.91
   2 !   11.3   0.0   3.9e-05     0.023     261     322 ..     575     636 ..     557     647 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0031
    TIGR00614 15 vqlevinavlegrdalvvmatGgGksLCyqlpav 48
                 vq e+i  +l g d++v  +tG Gk   + lp +
  MMETSP1174-20130828|17095_1 29 VQDETIPLILGGGDVMVAASTGSGKTAAFGLPII 62
                 899**************************99976 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 3.9e-05
    TIGR00614 261 eesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDgl 322
                  ++++r+e    f   ++++++ t     Gi+   + fv+ + lp   e+Y   +GR GR + 
  MMETSP1174-20130828|17095_1 575 SMKERRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDMPENYVHRIGRVGRAER 636
                  46788999999**9****9999988899*******************************875 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.094        55       2      15 ..      43      56 ..      42      68 .. 0.88
   2 ?    6.3   0.0    0.0016      0.94     263     336 ..     574     648 ..     569     661 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.094
    TIGR01587  2 lvieAPtGyGKtea 15
                 +++ A tG+GKt a
  MMETSP1174-20130828|17095_1 43 VMVAASTGSGKTAA 56
                 89**********75 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0016
    TIGR01587 263 rekkE.aellkelkknekfvivaTQviEvslDisvdvlitelapid...sLiQRlGRlaRygrkirenrevyvltell 336
                  r  kE  e l+ +k+ + ++++ T v+  ++Di    ++ ++  +d     + R+GR+ R  ++++    v ++  ++
  MMETSP1174-20130828|17095_1 574 RSMKErRESLAAFKDGDVRLLICTDVAARGIDIKGLPFVVNMTLPDmpeNYVHRIGRVGR-AERMG--LAVSIVSTVS 648
                  556775789************************977777776655522278999999999.44444..5666665555 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00046      0.27      13      31 ..      39      57 ..      28      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00046
    TIGR02785 13 kgqdiLVsAsAGSGKTaVL 31
                  g d++V+As GSGKTa +
  MMETSP1174-20130828|17095_1 39 GGGDVMVAASTGSGKTAAF 57
                 588*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:01.56
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|17105_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 267.75
//
Query:       MMETSP1174-20130828|17109_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 205.66
//
Query:       MMETSP1174-20130828|17107_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 735.94
//
Query:       MMETSP1174-20130828|17110_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 838.31
//
Query:       MMETSP1174-20130828|17112_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 750.69
//
Query:       MMETSP1174-20130828|17118_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   13.1   0.0     0.0085   13.0   0.0    1.0  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.1e-06    0.0085     241     297 ..      22      79 ..      10      80 .] 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-06
    TIGR03201 241 tewkilevsGskpGqesaldllsfgatlvvvGytmdkvevrlskl.mafdaralGnwG 297
                  t   + e   s p  ++a  lls+ a+++ +Gy+  +   +ls l  afda  l n+G
  MMETSP1174-20130828|17118_1  22 TITDVREEEASCPPSKMAGILLSHYANICAIGYSDFDDPKQLSGLdAAFDAAQLNNFG 79 
                  4445567778889999999****************9999*****9558******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       MMETSP1174-20130828|17119_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|17123_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 337.74
//
Query:       MMETSP1174-20130828|17127_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 565.08
//
Query:       MMETSP1174-20130828|17128_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 215.58
//
Query:       MMETSP1174-20130828|17134_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|17135_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 203.98
//
Query:       MMETSP1174-20130828|17136_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 208.14
//
Query:       MMETSP1174-20130828|17139_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1174-20130828|17140_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 935.66
//
Query:       MMETSP1174-20130828|17144_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.9   0.0      0.023   12.6   0.0    1.2  1  TIGR01259 comE: comEA protein


Domain annotation for each model (and alignments):
>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-06     0.023      52     113 ..      34      91 ..      12      98 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-06
    TIGR01259  52 seagkealvnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGekslek 113
                  ++ + + +  +n+A+  +  + +G+ p+    +    ++nG +ksv d+ kv    eks  k
  MMETSP1174-20130828|17144_1  34 EQRTVTDKLDINNAAVADYMQFPGLYPTIGGKV----ANNGPYKSVKDVYKVLSNAEKSTLK 91 
                  4556678899****************9865555....68*************8888887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 489.14
//
Query:       MMETSP1174-20130828|17151_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 208.40
//
Query:       MMETSP1174-20130828|17147_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   42.4   0.0    6.5e-12   41.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.4e-05   20.3   0.0    0.00013   19.3   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.016   11.6   0.0      0.024   11.0   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   4.7e-15   6.5e-12      79     181 ..      10     102 ..       2     107 .. 0.90

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 4.7e-15
    TIGR03903  79 aetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                  +  + +m q L al   h + ++hRDLk  n+++s+ +     k+ DFG++  l++++d       +   ++G+P + aPe +      ak+D+++ G+  +e
  MMETSP1174-20130828|17147_1  10 KSIAFVMRQLLQALVYLHGERIIHRDLKAANVLLSQDGA---VKLTDFGVTVKLTQTRD-------KRDTLVGTPYWMAPEVIERSQYDAKADIWSLGITAIE 102
                  556678*****************************9885...699**************.......455689**************************98887 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.8e-08   0.00013      95     144 ..      15      65 ..       4      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 9.8e-08
    TIGR03724  95 llkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskeved 144
                  +++++ +++  lH ++i+h Dl  +N+++ +d+ + l DfG   k  + +d
  MMETSP1174-20130828|17147_1  15 VMRQLLQALVYLHGERIIHRDLKAANVLLsQDGAVKLTDFGVTVKLTQTRD 65 
                  67888899999******************4577889*****9877655555 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.8e-05     0.024     255     310 ..       7      64 ..       3      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.8e-05
    TIGR01982 255 ldlkalaenlvesflkqvlrdg..fFHaDlHpGNilvakdgkiialDfGivgrlseee 310
                  ld k++a  + + + + v+ +g  + H Dl + N+l+++dg++ + DfG+  +l++ +
  MMETSP1174-20130828|17147_1   7 LDEKSIAFVMRQLLQALVYLHGerIIHRDLKAANVLLSQDGAVKLTDFGVTVKLTQTR 64 
                  67888888888888888888775589************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.48
# Mc/sec: 1366.64
//
Query:       MMETSP1174-20130828|17148_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1465.42
//
Query:       MMETSP1174-20130828|17156_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|17155_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.5   0.0      0.021   11.0   0.0    1.2  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.1e-06     0.021     553     581 ..     291     319 ..     273     322 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.1e-06
    TIGR00578 553 kltvsvlkdickaeGlrsgskkqelldal 581
                   +tv+ lk+i ++ Gl+ g++k el+  l
  MMETSP1174-20130828|17155_1 291 GMTVPQLKEILRDMGLKVGGRKSELIARL 319
                  69***********************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1159.36
//
Query:       MMETSP1174-20130828|17158_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|17162_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|17163_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|17164_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 357.65
//
Query:       MMETSP1174-20130828|17168_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|17178_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|17181_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 566.28
//
Query:       MMETSP1174-20130828|17184_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-36  124.2   0.0    1.6e-36  124.0   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.5e-33  113.9   0.0    1.4e-32  110.7   0.0    1.9  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.6e-33  113.0   0.0    4.4e-33  112.8   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      2e-23   81.0   0.0    2.6e-23   80.6   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    6.8e-23   79.3   0.6    1.4e-22   78.2   0.4    1.5  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.4e-21   73.6   1.1      6e-21   72.8   0.8    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    4.1e-20   70.1   0.1    5.4e-18   63.2   0.1    2.0  1  TIGR02415 23BDH: acetoin reductases
    2.8e-18   64.0   0.3    3.3e-18   63.7   0.2    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.4e-16   57.1   0.2    4.2e-16   56.3   0.1    1.4  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    8.1e-12   42.6   0.2    6.6e-11   39.6   0.1    2.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    7.8e-11   39.5   0.3    2.7e-10   37.8   0.2    1.7  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   4.3e-39   1.6e-36      33     225 ..       4     199 ..       1     200 [] 0.91

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 4.3e-39
    TIGR01830  33 eekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitr......DklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvg.llGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdeas 225
                  ++++++ ++el + g  +++++ d++d+ +++++v++v++++g++d+lvnnAG+ +      D+ l+    ed+++ + + L+++ n+t++ + +m  +r+Gr++n+ssv g ++  +g + Y+ +K+G+ glt+ ++ E a+ +itvn+v PG+++t   +    + + ++    p++r g+p+e+aaav+fLas++as
  MMETSP1174-20130828|17184_1   4 QDRISAREQELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQtgssleDGTLVSTPIEDFERKLMITLTTAINTTRSSVAAMRCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSD----EDELAAGVFTPVGRPGRPAEIAAAVVFLASSAAS 199
                  56678889999******************************************964334444999**********************************************9556889***************************************98765....3444555678********************9986 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   3.9e-35   1.4e-32      35     185 ..       4     161 ..       1     167 [. 0.92
   2 ?    1.3   0.0       0.1        37     223     239 ..     183     199 ..     175     200 .] 0.86

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 3.9e-35
    TIGR01963  35 eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAG.iqhvapiee.....fptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhg.lvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrt 185
                  ++  +a ++el + g+ +l l+ d+t+++  ++++++v+++fg+ld+LvnnAG +q+ + +e+      p+e+fe+ + ++lt+a+ t+r  +  m+ + +Gr++n++sv g  v+ +   aY  aK g+ Glt+ + +E A+ git+n++ Pg+v+t
  MMETSP1174-20130828|17184_1   4 QDRISAREQELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGmVQTGSSLEDgtlvsTPIEDFERKLMITLTTAINTTRSSVAAMRCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHT 161
                  5667788999999****************************************669999999855544699****************************************9457778899***********************************99 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.1
    TIGR01963 223 veevaelalflasdaaa 239
                  + e+a++++flas+aa 
  MMETSP1174-20130828|17184_1 183 PAEIAAAVVFLASSAAS 199
                  689**********9985 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   1.2e-35   4.4e-33      42     226 ..      11     198 ..       2     200 .] 0.87

  Alignments for each domain:
  == domain 1    score: 112.8 bits;  conditional E-value: 1.2e-35
    TIGR01829  42 lqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitr......davfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnG.lkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseea 226
                  +qe  + gf    + +d+++  +a++ v++v ++ G++dvlvnnaG+ +      d ++     e++e  + + l++  n tr  +++m+ + +Gr++n+ssv G +    G + ys ak G+ G+t+ ++ e+a++g+tvn + PG+++t      ++++ + +    Pv+r g+p+eiaaav+flas +a
  MMETSP1174-20130828|17184_1  11 EQELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQtgssleDGTLVSTPIEDFERKLMITLTTAINTTRSSVAAMRCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSD--EDELAAGVF--TPVGRPGRPAEIAAAVVFLASSAA 198
                  5555566666777789******************************9744444449999**********************************************445678****************************************8654..455555554..5********************987 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0     7e-26   2.6e-23      44     232 ..      11     199 ..       2     200 .] 0.78

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 7e-26
    TIGR01832  44 qekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefse......kdwddvlnvnlkavfllsqavakkllkqGrkgkiiniaslls.fqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasd 232
                  ++++ alG   l l  dl+d ++a+++v+++v+++g++d+lvnnaG+++   ++e +       +d++  l + l +   ++++    +++  r g+++n++s+           +y+ +k ++ Glt+ ++ e a++gi vn++ PG+++t  +++   d + +a +    P gr G+p+++a a+vflassa++
  MMETSP1174-20130828|17184_1  11 EQELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTGSSLEDGTlvstpiEDFERKLMITLTTAINTTRSSVA-AMRCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSDE---D-ELAAGV--FTPVGRPGRPAEIAAAVVFLASSAAS 199
                  4566778888889999*********************************98887755411112267777777777776666665443.4556679*******98541222223458***********************************997632...3.333334..46*********************985 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.4   3.8e-25   1.4e-22      58     223 ..      12     174 ..       1     200 [] 0.80

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.8e-25
    TIGR03971  58 klvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafe......lseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvag.lkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraf 223
                  + + alG   l  ++d+ +    + +v++ v++fGrldv+v+naG+++ g++ e         e+++  l + l+ + +t ++ v a+  ++  G ++ vssv+g +++ pg++ y++ak G+ glt+ ++ e a ygi vns++P  v+t   +++         e aa  f
  MMETSP1174-20130828|17184_1  12 QELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTGSSLEdgtlvsTPIEDFERKLMITLTTAINTTRSSVAAMRCNR-YGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSDED---------ELAAGVF 174
                  556677888888899***********************************999855542234599***********************8877.678888888877699*******************************************988844.........3334444 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.8   1.6e-23     6e-21      56     235 ..      23     199 ..       7     200 .] 0.85

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 1.6e-23
    TIGR03206  56 avavditdrasvdaavaaaeealgpvdvlvnnagwdvlk......pflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgs.sgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpekl.ieaftraiplgrlgkpddlagailflasddaa 235
                   +  d+td ++ +  v  + + +g  dvlvnnag  + +      ++++t   ++er + i lt a+    + +  m   + gr+vn++s ++ + s  g   y++ kgg+  +++ ++ e ar gitvn v pg  +t         +++ + l    ft   p+gr g+p ++a a++flas  a+
  MMETSP1174-20130828|17184_1  23 GLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTGssledgTLVSTPIEDFERKLMITLTTAINTTRSSVAAMRCNRYGRVVNVSSVTGPIVSaPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTG--------SSDEDELaAGVFT---PVGRPGRPAEIAAAVVFLASSAAS 199
                  56789*****************************9776411112257789999*************************************9997655168999********************************98874........4444444044565...9*******************9886 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.4e-20   5.4e-18      39     190 ..       9     166 ..       2     200 .] 0.81

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 1.4e-20
    TIGR02415  39 etakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtp.ile.....iteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiag.vegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  + ++el + g+  + ++ d++d s  e++v+q v+++G ldvlvnnaG+ ++ + +++        e++e+   + +++ +   ++++ ++ + +  G+++n +s++g +++ p   ays +k  + glt+  + e a  gitvn+  PG v+t   +e
  MMETSP1174-20130828|17184_1   9 AREQELLALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTGSsLEDgtlvsTPIEDFERKLMITLTTAINTTRSSVAAM-RCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSDE 166
                  567788888899999999******************************98875425442221144699********999999888877765.57788*********98568999999*************************************87664 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.2   8.9e-21   3.3e-18      44     225 ..      15     199 ..       3     200 .] 0.82

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 8.9e-21
    TIGR01831  44 raqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar......daafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsg.vmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkealklvpmkrvgkaeevaalaaflmsddaa 225
                   a g  +  l  d++d  ++  ++++ +++ g    +v nag+ +      d ++ +   ed++  +  +l +  n  +  v  m r  + gr++ ++sv+g ++   g v ys ak g+ g t+ ++ve a+  itvn + pg ++t+  +e e  l   +   p+ r g+++e+aa + fl s  a+
  MMETSP1174-20130828|17184_1  15 LALGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQtgssleDGTLVSTPIEDFERKLMITLTTAINTTRSSVAAM-RCNRYGRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSSDEDE--LAAGV-FTPVGRPGRPAEIAAAVVFLASSAAS 199
                  555555555666777777777888888888888888888888764222222666777778999999999********99999887.666779*********978999*****************************************9866544..56666.79********************9886 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.1e-18   4.2e-16     468     604 ..      22     164 ..       3     169 .. 0.86
   2 ?   -2.7   0.0      0.79   2.9e+02     640     655 ..     182     197 ..     176     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.1e-18
    TIGR02632 468 valkldvtdeeavkaafaevalayGGvdivvnnaGiavs.kplee.....teleeWdlnldilatGyflvareaarllrkqglggnlvfiaskna.vvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsg 604
                  + l+ d+td ++ +  +++v+  +G +d++vnnaG++ + + le+     t  e+++++l i  t     +r +++ +r     g +v ++s+ + +v+ ++++ays ak     l r +++e a +gi vn+v+P  v  Gs+
  MMETSP1174-20130828|17184_1  22 LGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTgSSLEDgtlvsTPIEDFERKLMITLTTAINTTRSSVAAMRCNRY-GRVVNVSSVTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWVHTGSS 164
                  45888******************************97651444432222144799***********************98776.6789999987649999***************************************99985 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.79
    TIGR02632 640 lpediaeavfllasdk 655
                   p++ia av +las+ 
  MMETSP1174-20130828|17184_1 182 RPAEIAAAVVFLASSA 197
                  5899999999999986 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   1.8e-13   6.6e-11      69     248 ..      32     198 ..      20     200 .] 0.73

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.8e-13
    TIGR02685  69 ssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevkeeyrrkv..plgqreasaeqiadvviflvskka 248
                  s+ e i++    +fGr dvlvnna        l    e+g+  + ++e    +l+ + + a    i++    ++  r +  ++ + +  ++  +++ p  g   y++ak  ++Gltr  ++e a ++i vn+v pG        + + ++e    v  p+g+     ++ia +v+fl s+ a
  MMETSP1174-20130828|17184_1  32 STAERIVKQVVDHFGRLDVLVNNAGMVQTGSSL----EDGTLVSTPIEDFERKLMITLTTA----INTTRSSVAAMRCNRYGRVVNVSSVTGPIVSAP--GSVAYSVAKGGMDGLTRGVSVEEARYGITVNSVQPGWV----HTGSSDEDELAAGVftPVGRPGR-PAEIAAAVVFLASSAA 198
                  567899999999************876554433....455555666666666666554444....445555555666777777777777778888877..7789********************************74....55666666666655448887655.55799999***99887 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.2   7.1e-13   2.7e-10      39     189 ..       8     161 ..       2     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 7.1e-13
    TIGR03325  39 aagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvd..ipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsn.ag.fypngggalytaakhavvglvkelayelapy.vrvngvapgglst 189
                  +a+ +el a  g   +g++gd    +  ++ v++ v+ fg+ld+l++nag+ +   +l d  +    i e f+    i + + + + +++++a+   r + +  vs  +g + ++ g + y+ ak  + gl + ++ e a y + vn v pg + t
  MMETSP1174-20130828|17184_1   8 SAREQELLA-LGFPCLGLVGDLTDASTAERIVKQVVDHFGRLDVLVNNAGMVQTGSSLEDgtLVSTPI-EDFERKLMITLTTAINTTRSSVAAMRCNRYGRVVNVSSvTGpIVSAPGSVAYSVAKGGMDGLTRGVSVEEARYgITVNSVQPGWVHT 161
                  555555554.3666899************************************999998733444444.67999********************9999777777765155467899999******************9998779********8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 599.95
//
Query:       MMETSP1174-20130828|17183_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-08   32.6   3.2    3.6e-08   31.4   2.2    1.6  1  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   2.2   8.7e-12   3.6e-08      19     153 ..      50     194 ..      35     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 8.7e-12
    TIGR03902  19 lltghlvHlnwaHlllnlagllllvllferrlrarrllllllllsllislglllllpeleaY..vGLSGvlhGlfalgalr.dir.....kkrksswl........lllgvlaklaleqltgasastaeligarvaveaHlaGalsGllla 153
                  l+t ++ H + +Hl++n+++l++ +  + r+l +r++l l++ ++++ s++  +++ ++++    G SG+l +++a+ +++  +      ++     l          ++ ++k a e++  +   + ++ g ++ + aHl Ga++G+ ++
  MMETSP1174-20130828|17183_1  50 LFTSMFSHKDGKHLFANMLTLFFFGPQVVRSLGTRTFLQLYVGSGIFASACH-VVTAKYKRLpaLGASGALNAIVAYSICVnPWAlivvfAEL----LpvplpaclYGILFIGKDAAELVDIDIPLIGSA-GRNIGHAAHLGGAFCGIGYF 194
                  89**********************9999999999999999999999999866.555566666679************9976133343333222....2444455436677777******99999966666.9***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 839.93
//
Query:       MMETSP1174-20130828|17186_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|17185_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.7   0.0    1.4e-07   29.5   0.0    1.1  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
    4.8e-05   20.3   0.1    5.4e-05   20.1   0.1    1.0  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   6.9e-11   1.4e-07      18      99 ..      14      95 ..       3     105 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 6.9e-11
    TIGR02007 18 veakeGetildvalkaeieiehacekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavva....dedlvvei 99
                 +   +G +i +++l++++++ +   +    ++c +++r+G   l  ++ +e  +l k    e++ rlsc+a+v+    de++vv+i
  MMETSP1174-20130828|17185_1 14 IRLMPGRKIRQALLTNGVKMGSCAGDLQCLCSCAILIRRGKALLAPSKTQERVMLKK----EPDWRLSCRAFVGeiegDEEMVVRI 95
                 566799**************875555444457***********************98....9**********97222245677766 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.6e-08   5.4e-05      39     113 ..       9      83 ..       6     106 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.6e-08
    TIGR01941  39 deeksltveaGdkllntlaskgifissacGGggscgqcrvrvvegggeilptekshiskreakegwrlscqvkvk 113
                  +++k+++   G k+ ++l ++g+ + s  G       c + +++g   + p++ +     +++ +wrlsc++ v 
  MMETSP1174-20130828|17185_1   9 QDDKKIRLMPGRKIRQALLTNGVKMGSCAGDLQCLCSCAILIRRGKALLAPSKTQERVMLKKEPDWRLSCRAFVG 83 
                  578999*******************9855555544678888888877777766666666667789*****98774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 586.03
//
Query:       MMETSP1174-20130828|17187_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 153.39
//
Query:       MMETSP1174-20130828|17188_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|17190_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|17194_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|17196_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|17193_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1483.74
//
Query:       MMETSP1174-20130828|17197_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1245.98
//
Query:       MMETSP1174-20130828|17199_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|17202_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|17201_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 966.82
//
Query:       MMETSP1174-20130828|17205_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 588.60
//
Query:       MMETSP1174-20130828|17200_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1745.19
//
Query:       MMETSP1174-20130828|17203_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   35.9  11.3    2.2e-09   35.0   7.8    1.4  1  TIGR01065 hlyIII: channel protein, hemolysin III family


Domain annotation for each model (and alignments):
>> TIGR01065  hlyIII: channel protein, hemolysin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   7.8   5.3e-13   2.2e-09       3     197 ..      73     293 ..      71     299 .. 0.65

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 5.3e-13
    TIGR01065   3 ianaitHligivlaivalvl...........llalsseak.alavlsvlvyglslvlLflvStlyHsvakaekak..kvlkklDhaaIyvlIAgsYtpvllle.....lksalgltvlviiWllallgiilklvfkkrpkllslvlYlvmGwlvvlvvktllenlsgaalvlLalGGvlYtvGavfyalkekip.....lkla...HaiwHlfvlgasavhf 197
                  + n +tH++g+ la+ ++ +           +++ s + + ++++l++ v+  + v  f+ St+yH  ++a+  +  + l  lD   I +lI gs++p +        l   l lt+ + +     l+     + + r++++ + + + +G    ++++ ++e+++++ ++ L +   lY  G  fya++ ++      + l+   H++wH +v++a  + +
  MMETSP1174-20130828|17203_1  73 TGNIWTHIFGACLALKLTLTvssgggealsdMVVSSGSGTdFTDQLVLRVFLGAGVCAFILSTVYHVGNCASSEErcSTLLWLDLNGIALLISGSFFPGIYFGfacfpLLRDLYLTIAATVLVAVFLAANCVKLQHYRVRMMVTGVLVGVGIALHWLLV-VSEEAKTHLMTKLLMMLGLYAAGFGFYATHFPECllpgsFDLIlhsHQLWHGCVVAAFYLWY 293
                  56788888888887754433111111111113444444448999**********************99976665411567889************9998777732222334444444444444334444444455556667777777777766666665.5556666667777766679***********8877777874422356*********9976666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1315.89
//
Query:       MMETSP1174-20130828|17206_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.0   0.0    0.00016   18.6   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
      0.005   13.5   0.0     0.0059   13.3   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP
  ------ inclusion threshold ------
      0.016   13.0   0.0      0.034   11.9   0.0    1.5  1  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
      0.051   10.3   0.0      0.073    9.8   0.0    1.1  1  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.5e-07   0.00016     261     328 ..     192     260 ..     180     269 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.5e-07
    TIGR02037 261 alvaevlkgspAekaGlkaGDvilkvngkkiksa...adlreaigtlkpgkkvklkilRkgkekeikvtlk 328
                   lv+++l++s+A++ G+++GD  +++ngk++k     +++ +++++++    +kl++ Rk   +++++ ++
  MMETSP1174-20130828|17206_1 192 ILVSRILPSSAAANLGIQRGDQFVAMNGKPLKGGltgTEFANMLAAAER--PLKLSLARKRDDVDVEILFR 260
                  69*****************************975111444444444444..45666666666666665554 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.7e-06    0.0059     203     274 ..     191     265 ..     146     271 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.7e-06
    TIGR00054 203 elvlsdvvdnspaekaGlkeGDkilkidgeklk...swrdlvklvkenpeksleikveRngetlslklvpea.kgk 274
                   + +s + + s+a++ G++ GD+ + ++g++lk     +++ +++    e  l++ + R+ + +++++++++ kgk
  MMETSP1174-20130828|17206_1 191 PILVSRILPSSAAANLGIQRGDQFVAMNGKPLKgglTGTEFANMLAA-AERPLKLSLARKRDDVDVEILFRRmKGK 265
                  45789999************************933346789988888.889999999999999****999999888 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05     0.034      55      86 ..     151     182 ..     137     196 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-05
    TIGR03800  55 ektglleplreliksglPvfGtcaGlillake 86 
                  + ++++ p+ e ++  l  fG caG+i l +e
  MMETSP1174-20130828|17206_1 151 DAFQMMSPIDENLEVTLDKFGECAGIIALGEE 182
                  4689*************************988 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.1e-05     0.073     125     182 ..     202     261 ..     197     269 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.1e-05
    TIGR02860 125 PaeeagiqvGDlilkvngekikeeedvaklineag..geklkltikRkkkkiekklkpvk 182
                   a++ giq GD+ +++ng+++k     +++ n     ++ lkl + Rk + ++ ++   +
  MMETSP1174-20130828|17206_1 202 AAANLGIQRGDQFVAMNGKPLKGGLTGTEFANMLAaaERPLKLSLARKRDDVDVEILFRR 261
                  567889****************999988888877666899********999998885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1233.42
//
Query:       MMETSP1174-20130828|17208_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 757.87
//
Query:       MMETSP1174-20130828|17209_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00046   17.4   0.2    0.00051   17.2   0.1    1.0  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family


Domain annotation for each model (and alignments):
>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.3e-07   0.00051     252     356 ..       3     111 ..       1     114 [. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.3e-07
    TIGR03989 252 GkgadkaiitvgevegelieealklvakgGrvvvtglakladedvklnlleltllqk....elkGalfGeanpradiprllelykaGklkldelvtktykldeinegyq 356
                  G+  ++++ t g++ +e++++a ++v+ +G + +    +++d  ++l+ +   l+++    ++ G+ f + ++   ++r  +  ++  lk++e + + y+ ++i  gy+
  MMETSP1174-20130828|17209_1   3 GNAVQETVKTAGNAVQETVKTAGNAVQETGIIAMGLSMDFTDAAMDLTDAARDLYRRsedmNVPGTSFTDFDSDDTVSRERAATTEEMLKVQENISEVYRREKIFAGYE 111
                  888999************************88877777999999**99999999986333368999999999999999999999************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 459.96
//
Query:       MMETSP1174-20130828|17211_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1001.56
//
Query:       MMETSP1174-20130828|17212_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|17219_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|17217_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1256.03
//
Query:       MMETSP1174-20130828|17215_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1181.30
//
Query:       MMETSP1174-20130828|17220_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.46
# Mc/sec: 189.38
//
Query:       MMETSP1174-20130828|17230_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 574.79
//
Query:       MMETSP1174-20130828|17233_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.74
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|17235_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-12   42.2   0.0    2.2e-10   37.9   0.0    2.0  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0086        35      26      35 .]       1      10 [.       1      10 [. 0.93
   2 !   37.9   0.0   5.3e-14   2.2e-10       2      35 .]      12      45 ..      11      45 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0086
    TIGR00756 26 MkergivPda 35
                 M+ +g+ P++
  MMETSP1174-20130828|17235_1  1 MRQSGVQPNV 10
                 9*******96 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 5.3e-14
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                 ++ + is++++ag++e+Alel++eM+ +g+ P++
  MMETSP1174-20130828|17235_1 12 SFGVAISACGNAGKWEKALELLQEMRQSGVQPNV 45
                 78889***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 181.93
//
Query:       MMETSP1174-20130828|17238_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|17240_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-93  311.6   0.3    1.8e-93  311.4   0.2    1.0  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    2.6e-36  123.0   1.2      3e-36  122.8   0.8    1.0  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    1.4e-34  117.8   0.1    1.6e-34  117.6   0.1    1.0  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
      5e-17   59.9   1.7      6e-17   59.6   1.2    1.0  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    3.4e-10   37.3   0.0    4.6e-10   36.9   0.0    1.2  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    8.8e-07   26.1   0.1      1e-06   25.9   0.1    1.2  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    3.4e-05   20.4   0.6    4.4e-05   20.1   0.4    1.1  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent


Domain annotation for each model (and alignments):
>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.4   0.2     3e-96   1.8e-93     147     349 ..       1     204 [.       1     219 [. 0.95

  Alignments for each domain:
  == domain 1    score: 311.4 bits;  conditional E-value: 3e-96
    TIGR02818 147 aeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnvmraalesahkgwgesiiigvagagqeistrpfqlvtgrvwkgsafggvkgrtelpglveqylkgeiklddfvtetm.pledi 349
                  aeis aki++ a+l+   llgcgv+tg+gav nt+ ve  ++vavfglg++gl+viqga++ +asri aid+n+akf++a +lgatd+vnp dydkpiqev+v +t++gvdy+f++ g ++vmraalesah+gwges +igva+agqeistrpfqlvtgr w g+afgg k r+e+p lv+++  g++kld+++t+   ++e  
  MMETSP1174-20130828|17240_1   1 AEISCAKISPTAPLDIASLLGCGVSTGLGAVWNTCDVEADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGATDCVNPLDYDKPIQEVLVGMTEWGVDYTFDATGRTEVMRAALESAHRGWGESCVIGVAAAGQEISTRPFQLVTGRKWVGTAFGGFKSRSEVPALVDDFEGGDLKLDHYITHRFqGIEGT 204
                  69*************************************************************************************************************************************************************************************************974144444 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.8   5.1e-39     3e-36     141     342 ..       4     207 ..       1     218 [. 0.90

  Alignments for each domain:
  == domain 1    score: 122.8 bits;  conditional E-value: 5.1e-39
    TIGR03451 141 qctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavigvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsse.edvveaireltggfgadvvidavgrpetykqafyardl.agtvvlvgvptpemklelplldvfsrggalksswygdclperdfpvlvdlylqgrldldkfvseri.slddveea 342
                   c+k+ p a  ++a llgcgv +glga  nt++v+ + svav+g+g+vg a+i ga++ ga++i a+d++ +k++ a +lgat+ vn  + +++++++      +g+d + da gr+e  + a+ +     g   ++gv     ++     ++   g +   + +g     ++ p+lvd ++ g l+ld+++++r  +++   +a
  MMETSP1174-20130828|17240_1   4 SCAKISPTAPLDIASLLGCGVSTGLGAVWNTCDVEADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGATDCVNPLDyDKPIQEVLVGMTEWGVDYTFDATGRTEVMRAALESAHRgWGESCVIGVAAAGQEISTRPFQLV-TGRKWVGTAFGGFKSRSEVPALVDDFEGGDLKLDHYITHRFqGIEGTLDA 207
                  69**************************************************************************************9956899999988889********************97665269999*********9998766665.466777888999999***********************997235555444 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.1   2.8e-37   1.6e-34     150     347 ..       3     199 ..       1     213 [. 0.85

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 2.8e-37
    TIGR03989 150 asvvkidkdipldkaalvgCgvttGfGsavkaadvkaGdtvvvvGiGGvGinavqGaavaGarkvvavdpvefkrekalklGathavasieealelvaeltnGkgadkaiitvgev.egelieealklvakg.GrvvvtglakladedvklnlleltllqkelkGalfGeanpradiprllelykaGklkldelvtktyk 347
                   s+ ki+++ pld a+l+gCgv+tG G+  ++ dv+a   v+v+G+G vG++ +qGa++ Ga++++a+d+ + k + a +lGat  v+ ++   + ++e+  G++   +  t + + + e++  al+   +g G+  v+g+a+   ++++  +++l+  +k  +G+ fG+ ++r+++p l++ ++ G lkld+ +t++++
  MMETSP1174-20130828|17240_1   3 ISCAKISPTAPLDIASLLGCGVSTGLGAVWNTCDVEADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGATDCVNPLD-YDKPIQEVLVGMTEWGVDYTFDATgRTEVMRAALESAHRGwGESCVIGVAAAG-QEISTRPFQLVTGRK-WVGTAFGGFKSRSEVPALVDDFEGGDLKLDHYITHRFQ 199
                  6999**********************************************************************************97654.3455666666665555555555551345666677666554499999***9765.679999999987666.67*********************************985 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   1.2     1e-19     6e-17     124     270 ..       7     158 ..       1     167 [. 0.86

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 1e-19
    TIGR03366 124 avpddlpdavaapaaCatatvaaaleaagd.legrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevrkeatdgr...avdvalelsGasaaveaalesldvg.GvvvlvGsvaPadevaldpeqvvR 270
                  +++   p ++a+  +C ++t   a+ ++ d  ++++v v+G+G +GL+ +  a+ rGasr++a+D ++++ ++aa++Ga++ +++   ++  +e+  g    +vd  ++ +G ++ ++aales + g G   ++G  a ++e++ +p q+v 
  MMETSP1174-20130828|17240_1   7 KISPTAPLDIASLLGCGVSTGLGAVWNTCDvEADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGATDCVNPLDYDKPIQEVLVGMtewGVDYTFDATGRTEVMRAALESAHRGwGESCVIGVAAAGQEISTRPFQLVT 158
                  56666788899999******8877777777478899************************************************99888777666544322289*******************9988799999****************994 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   7.8e-13   4.6e-10     161     320 ..      39     203 ..       8     216 .. 0.77

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 7.8e-13
    TIGR00692 161 aGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvakedlvkvvaeltsge.GvdvvlelsGapkaleqgldavang.GrvallglpeskvtidltnkvifkgltikGitGrkl..fetwykvsrliq...snkldlapiithkfk.lde 320
                  a  sv+v G G +Gl  +  a+  Gas++ ++d+n  + ++a ++Gat +vn+ + d     + ++++e Gvd + + +G  + ++ +l+ + +g G   ++g+  +   i      +  g    G     +  f++  +v +l++    + l+l+  ith+f+ ++ 
  MMETSP1174-20130828|17240_1  39 ADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGATDCVNPLDYDKPIQEVLVGMTEwGVDYTFDATGRTEVMRAALESAHRGwGESCVIGVAAAGQEISTRPFQLVTGRKWVG---TAFggFKSRSEVPALVDdfeGGDLKLDHYITHRFQgIEG 203
                  55789***********************************************998775444445666665********************999886889999999988888777444444433333...322226777777777652226889999999999986665 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.8e-09     1e-06     150     221 ..      22      95 ..       6     167 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.8e-09
    TIGR03201 150 davttpyqaavq.aglkkgdlviviGvGGvGgyavqvakalGa.avvaidideeklemvkkaGadlilnpkdis 221
                    v+t   a+ +  +++ +  v v G G vG  ++q a+  Ga  + aid +++k+++  + Ga   +np d  
  MMETSP1174-20130828|17240_1  22 CGVSTGLGAVWNtCDVEADSSVAVFGLGAVGLAVIQGAQMRGAsRIFAIDTNPAKFDIAAQLGATDCVNPLDYD 95 
                  566677777754269****************************6688***********************9863 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.4   7.5e-08   4.4e-05     182     266 ..      33     118 ..      14     132 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 7.5e-08
    TIGR02819 182 vtagvktgstvyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgc.etvd.lkkdatlaeqieqilgepevdaavdavg 266
                   t  v++ s+v + g g vgla+ + a++ ga+ +   d n++++  a  +g  + v+ l  d+ ++e ++  + e  vd + da g
  MMETSP1174-20130828|17240_1  33 NTCDVEADSSVAVFGLGAVGLAVIQGAQMRGASRIFAIDTNPAKFDIAAQLGAtDCVNpLDYDKPIQEVLVG-MTEWGVDYTFDATG 118
                  37889****************************************999999962556535556666665544.34556777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 727.55
//
Query:       MMETSP1174-20130828|17247_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-11   41.0   0.1    3.6e-11   40.8   0.1    1.0  1  TIGR02990 ectoine_eutA: ectoine utilization protein EutA


Domain annotation for each model (and alignments):
>> TIGR02990  ectoine_eutA: ectoine utilization protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   8.7e-15   3.6e-11     127     238 ..       2     123 ..       1     124 [. 0.85

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 8.7e-15
    TIGR02990 127 tpytvevsremadyfaarGfeiasftclGltddremarisedaivelakeaadk..dadalflsctalraa..tvvaeieqaiGk......pvvtsnqatawaclrlaGdeearpelGrlle 238
                  tpy   v ++  + + a G+++++   lG+  d   +  s d i e a +   +  ++d +f+ c+a+ra   + ++e+e  +         vvts qa  w+ lr aG+++   ++G l++
  MMETSP1174-20130828|17247_1   2 TPYIDAVHNDNVAQLQAAGVDVVTSMNLGFSVDAMTSAASRDYITECADALLGDggHTDVVFIGCSAFRAMapGYITELERHLSDrtqrsvAVVTSMQAFFWHMLRSAGIDDRIDDYGVLFR 123
                  899999988888888899*****************************999875423799**********862368999998775322223369*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.73
# Mc/sec: 226.01
//
Query:       MMETSP1174-20130828|17249_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|17248_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1174-20130828|17251_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 620.84
//
Query:       MMETSP1174-20130828|17255_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.2   0.3    2.3e-06   25.0   0.2    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.9e-06   23.9   0.0    3.3e-06   23.8   0.0    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    5.2e-05   19.0   0.1    5.5e-05   18.9   0.0    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    9.6e-05   19.0   0.0    0.00011   18.8   0.0    1.0  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    0.00019   18.2   0.0    0.00023   17.9   0.0    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00038   17.1   0.1    0.00043   16.9   0.1    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00041   17.4   0.0    0.00045   17.3   0.0    1.0  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00051   16.8   0.1    0.00055   16.7   0.0    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0008   16.1   0.0    0.00082   16.1   0.0    1.0  1  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
    0.00088   15.6   0.0    0.00095   15.5   0.0    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.003   14.3   0.0     0.0036   14.0   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0034   14.1   0.0      0.004   13.9   0.0    1.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.004   14.2   0.2     0.0042   14.2   0.1    1.0  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0041   13.5   0.0     0.0043   13.4   0.0    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0053   14.3   0.1     0.0062   14.1   0.1    1.0  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0066   13.1   0.0     0.0067   13.1   0.0    1.0  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0069   13.3   0.0     0.0078   13.1   0.0    1.1  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0098   12.8   0.1      0.011   12.6   0.1    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
  ------ inclusion threshold ------
      0.012   12.2   0.0      0.012   12.2   0.0    1.0  1  TIGR00551 nadB: L-aspartate oxidase
      0.018   12.0   0.0       0.02   11.8   0.0    1.0  1  TIGR01789 lycopene_cycl: lycopene cyclase
       0.03   11.1   0.2      0.037   10.8   0.1    1.1  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
      0.033   11.2   0.0      0.033   11.2   0.0    1.1  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   1.2e-08   2.3e-06       1      37 [.      28      65 ..      28      66 .] 0.88

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.2e-08
    TIGR03467  1 vvvvGgGlAGLaAAveLa.raGvrvtllEarrqlGGRa 37
                 v+vvGgG+AG+  A + a +  v v l+Ea  ++GGR 
  MMETSP1174-20130828|17255_1 28 VAVVGGGWAGVYFAWRQAtSSEVSVCLFEANSRIGGRT 65
                 89**********9987651566***************5 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-08   3.3e-06       3      42 ..      26      64 ..      24      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.8e-08
    TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGk 42
                  +v+vvGgG +G+ +a++ ++   +v + l+Ea+ R+GG+
  MMETSP1174-20130828|17255_1 26 CDVAVVGGGWAGVYFAWRQATS-SEVSVCLFEANSRIGGR 64
                 68****************9998.89**************7 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-07   5.5e-05     166     207 ..      23      65 ..      14      66 .] 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.9e-07
    TIGR01372 166 nahcDvLvvGaGpaGLaaA.raAaraGarvilvdeqaeaGGsl 207
                  ++ cDv vvG+G aG+  A r+A+++ ++v l + ++++GG++
  MMETSP1174-20130828|17255_1  23 QTTCDVAVVGGGWAGVYFAwRQATSSEVSVCLFEANSRIGGRT 65 
                  578************975539999*****************85 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.9e-07   0.00011       2      36 ..      27      61 ..      26      64 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 5.9e-07
    TIGR03219  2 rvaiiGGGiaGvalalelsksshlnvklfeaapaf 36
                  va++GGG aGv +a   + ss + v+lfea    
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQATSSEVSVCLFEANSRI 61
                 59****************************98765 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06   0.00023       1      34 [.      28      62 ..      28      65 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-06
    TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkig 34
                 v+++GgG aG++ A + a+ ++ +V+l+E+n++ig
  MMETSP1174-20130828|17255_1 28 VAVVGGGWAGVYFAWRQATsSEVSVCLFEANSRIG 62
                 79*********988877776999**********98 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.3e-06   0.00043       1      38 [.      28      66 .]      28      66 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.3e-06
    TIGR02734  1 avViGaGlgGLAlAirLaa.aGievtvlekrdkpGGRag 38
                 + V+G+G +G   A r a+   ++v ++e+++++GGR++
  MMETSP1174-20130828|17255_1 28 VAVVGGGWAGVYFAWRQATsSEVSVCLFEANSRIGGRTY 66
                 57*************98751679**************97 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.4e-06   0.00045       1      36 [.      27      63 ..      27      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.4e-06
    TIGR01790  1 DliviGgGlAglaiAlela.kpglrvqlieaapklpf 36
                 D++v+GgG Ag+  A + a   + +v+l ea+ ++++
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQAtSSEVSVCLFEANSRIGG 63
                 9***************99989*********9998877 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     3e-06   0.00055     132     180 ..      14      63 ..      10      66 .] 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3e-06
    TIGR01317 132 wvkPrppkkrtGkkvavvGsGPaGlaaa.dqlnraGhtvtvferedrvGG 180
                   v  +  +++t   vavvG G aG+  a  q + +  +v +fe + r+GG
  MMETSP1174-20130828|17255_1  14 AVSASLISEQTTCDVAVVGGGWAGVYFAwRQATSSEVSVCLFEANSRIGG 63 
                  566677788999************98773677888899***********9 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.4e-06   0.00082      16      58 ..      17      58 ..       8      65 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.4e-06
    TIGR03329 16 akalkgdteadvaivGGGftGlwtaillkqaepkldvlvlead 58
                 a  ++++t++dva+vGGG++G++ a   + ++ +++v ++ea+
  MMETSP1174-20130828|17255_1 17 ASLISEQTTCDVAVVGGGWAGVYFAWR-QATSSEVSVCLFEAN 58
                 55678999***************9965.345567788888876 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.1e-06   0.00095     374     417 ..      20      64 ..      13      66 .] 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5.1e-06
    TIGR03997 374 kkarrrkkvlvvGgGPaGleaa.ataarrGhrvtllereeelGGq 417
                   + +++  v vvGgG aG+  a ++a+    +v l+e ++++GG+
  MMETSP1174-20130828|17255_1  20 ISEQTTCDVAVVGGGWAGVYFAwRQATSSEVSVCLFEANSRIGGR 64 
                  45555678**********98662677788899************8 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.9e-05    0.0036       1      33 [.      27      59 ..      27      62 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.9e-05
    TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaks 33
                 dv++vGgg +G+ +A   ++ s++++ l+ea+s
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQATSSEVSVCLFEANS 59
                 89*****************99*********986 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.1e-05     0.004       1      32 [.      27      58 ..      27      62 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.1e-05
    TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveak 32
                 d+++vGgG +G  +A + a s++++v l+ea+
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQATSSEVSVCLFEAN 58
                 9******************999*******997 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.3e-05    0.0042      18      59 ..      22      64 ..      12      66 .] 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.3e-05
    TIGR00292 18 dyaesDviivGaGpsGLtaayylakeg.lkvvvlerklaiGGG 59
                 +    Dv++vG+G +G+  a   a    + v+++e +  iGG 
  MMETSP1174-20130828|17255_1 22 EQTTCDVAVVGGGWAGVYFAWRQATSSeVSVCLFEANSRIGGR 64
                 56789************99988888766*********999996 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.3e-05    0.0043     370     410 ..      23      64 ..      16      66 .] 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
    TIGR03996 370 atpgdvlvvGGGpaGleaa.rvlavrGhrvtlaeasarlGGm 410
                   t+ dv vvGGG aG+  a r  +    +v l ea++r+GG 
  MMETSP1174-20130828|17255_1  23 QTTCDVAVVGGGWAGVYFAwRQATSSEVSVCLFEANSRIGGR 64 
                  57899**********9866277777888************95 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.3e-05    0.0062       2      35 ..      27      61 ..      26      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.3e-05
    TIGR02032  2 DvvvvGaGpaGssaAlrlakkG.lrVlllekkelp 35
                 Dv vvG+G aG ++A r a+++ ++V l+e ++ +
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQATSSeVSVCLFEANSRI 61
                 9**************876665438999*9998765 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.6e-05    0.0067     128     170 ..      20      63 ..      10      66 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.6e-05
    TIGR01316 128 kapstkkkvaviGaGpaGlavaselakk.GhevtvfealhkpGG 170
                   +++t   vav+G G aG+  a   a     +v +fea  + GG
  MMETSP1174-20130828|17255_1  20 ISEQTTCDVAVVGGGWAGVYFAWRQATSsEVSVCLFEANSRIGG 63 
                  56789999**************88876515799*****999998 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.2e-05    0.0078       2      37 ..      27      63 ..      26      66 .] 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
    TIGR03364  2 dvvvvGaGivGlahAla.aarrGlkVtvierssraaG 37
                 dv+vvG+G  G+ +A++ a++  ++V+++e +sr  G
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRqATSSEVSVCLFEANSRIGG 63
                 9**************963778899*******999776 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   6.1e-05     0.011       1      35 [.      27      62 ..      27      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.1e-05
    TIGR03197  1 kvavIGaGiAgaalalsLa.rrGvqvtllekdekla 35
                 +vav+G+G Ag+  a++ a + +v+v l+e++++++
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQAtSSEVSVCLFEANSRIG 62
                 69***********9997652789*******998876 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.4e-05     0.012       2      30 ..      25      53 ..      24      66 .] 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.4e-05
    TIGR00551  2 eadvvviGsGaagLsaalalaekyrvvvl 30
                 ++dv+v+G+G ag++ a + a + +v+v 
  MMETSP1174-20130828|17255_1 25 TCDVAVVGGGWAGVYFAWRQATSSEVSVC 53
                 69**********************99884 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.02       1      39 [.      27      64 ..      27      66 .] 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00011
    TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaaasigGn 39
                 dv+vvGgG ag   a r q +  ++ + + ea + igG 
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWR-QATSSEVSVCLFEANSRIGGR 64
                 89*************99.67789**************95 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0002     0.037       2      34 ..      27      59 ..      26      63 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0002
    TIGR03970  2 DvlvvGaGsaGsvlaarLsedpsatvtvleaGp 34
                 Dv vvG+G aG   a r ++ +  +v + ea +
  MMETSP1174-20130828|17255_1 27 DVAVVGGGWAGVYFAWRQATSSEVSVCLFEANS 59
                 9*****************************976 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018     0.033     140     162 ..      20      42 ..       4      59 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00018
    TIGR03169 140 kaseetkslavvGgGaagvElal 162
                   +++ t ++avvGgG agv  a 
  MMETSP1174-20130828|17255_1  20 ISEQTTCDVAVVGGGWAGVYFAW 42 
                  4455566***********96654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|17253_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1066.91
//
Query:       MMETSP1174-20130828|17259_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    7.3   8.7       0.73    7.4   1.1    2.0  2  TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR


Domain annotation for each model (and alignments):
>> TIGR01950  SoxR: redox-sensitive transcriptional activator SoxR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.0    0.0012         5      78      95 ..       2      19 ..       1      25 [. 0.85
   2 ?    7.4   1.1   0.00018      0.73      73      95 ..      23      45 ..      18      49 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0012
    TIGR01950 78 addwarlssqwkeelder 95
                 +++w+r s+qwk+  +++
  MMETSP1174-20130828|17259_1  2 ESEWKRDSNQWKRACEKK 19
                 579*********998876 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00018
    TIGR01950 73 grtptaddwarlssqwkeelder 95
                 g    +++w+r ssqwk+  +e+
  MMETSP1174-20130828|17259_1 23 GDQRCESEWKRDSSQWKRACEEK 45
                 5667899**********998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|17257_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.2   2.9     0.0012   16.2   2.0    1.4  1  TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
  ------ inclusion threshold ------
       0.48    8.3   4.9       0.11   10.3   0.5    2.1  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR03637  cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.0   5.6e-07    0.0012     114     215 ..      60     159 ..      49     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.6e-07
    TIGR03637 114 dddkrlavakalqlerielleqqWkkskelkeegflvdeekleallerseeeiekaeesqellaaeakltkalyklaaktveyedftrdkrkksidlanrfl 215
                  + + rl+   +  +eri  le+++++ k+ +   + +  e+l++ l+++  eiek e  +  la+ea++tk+l +  a t+++   +r+ r+++     + l
  MMETSP1174-20130828|17257_1  60 ERQSRLERRFNAVRERIDDLEERFENDKNEIPRDIRQRGEALKENLHNTVVEIEKEE--KGRLAREAEITKKLAEHEATTTQTLSQHRTSRSNNYGNLQSLL 159
                  56778888888899***************************************9855..5569*******************99999999988766655555 PP

>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.72   1.5e+03      14      29 ..      11      26 ..       6      39 .. 0.64
   2 ?   10.3   0.5   5.5e-05      0.11      13      39 ..      68      94 ..      64      99 .. 0.86
   3 ?   -1.6   0.1      0.27   5.6e+02      15      37 ..      92     114 ..      86     126 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.72
    TIGR01149 14 fnevkkrLDeieekve 29
                 + ++k++L  +e+ ++
  MMETSP1174-20130828|17257_1 11 IFKMKEQLGSLERDLN 26
                 5567788888887664 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.5e-05
    TIGR01149 13 efnevkkrLDeieekvefvngEvaqri 39
                  fn+v++r+D++ee+ e+   E+   i
  MMETSP1174-20130828|17257_1 68 RFNAVRERIDDLEERFENDKNEIPRDI 94
                 69****************999986655 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.27
    TIGR01149  15 nevkkrLDeieekvefvngEvaq 37 
                  +++++r + + e + +++ E+ +
  MMETSP1174-20130828|17257_1  92 RDIRQRGEALKENLHNTVVEIEK 114
                  45677777788888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       374  (0.091175); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|17262_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 905.07
//
Query:       MMETSP1174-20130828|17272_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 252.98
//
Query:       MMETSP1174-20130828|17273_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00075   17.7   0.0     0.0017   16.5   0.0    1.6  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.1e-07    0.0017      15      45 ..      73     103 ..      67     128 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.1e-07
    TIGR03685  15 keineenlkkvleaaGvevdearvKalvaaL 45 
                   +i+e++l+ +le  G  v ear+Kal+  +
  MMETSP1174-20130828|17273_1  73 GTIDEDELRMILEGMGERVSEARLKALIGEV 103
                  579************************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1349.22
//
Query:       MMETSP1174-20130828|17277_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|17279_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.46
# Mc/sec: 327.10
//
Query:       MMETSP1174-20130828|17283_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1174-20130828|17284_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 604.60
//
Query:       MMETSP1174-20130828|17285_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.6  31.4      0.026   10.0  18.8    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.098    8.1  37.3       0.28    6.6  25.8    1.6  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        0.1    8.5   3.4       0.13    8.1   2.3    1.2  1  TIGR01666 YCCS: hypothetical membrane protein, TIGR01666


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  18.8   1.9e-05     0.026     315     504 ..       4     193 ..       1     212 [. 0.70
   2 ?    2.8   0.1    0.0028       3.8     753     792 ..     254     293 ..     250     306 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.9e-05
    TIGR02169 315 eeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakase 504
                  e+  ++++e +   ++e++++++  e+ + +i++ + ++e+l+e +++  e+  + ++el + + ea+elr +   l+++l  ++++l  l+ e+ r  e  ++l  ++ e  ++l+   ++ + + e+ ee+ ++++++ q    ++++++++e+ + + + + ++  + l + ++ l ++  + +a++
  MMETSP1174-20130828|17285_1   4 EDGEQKLQEAVDAHQVEMQAQQKVTEDQAASIATLHSQQEALQESIQAGIERATHAESELRARSDEAEELRTHKGRLNTELLGAQSRLALLEAEEGRIEELEEELARAQGEDLEDLTTRLAAAEPFRERYEEATKALNEKSQAFILVAKEKDEVEQLHLEAEMKASRGMSDLVSIRKALRQAVSEVEALR 193
                  5556777777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887777777777777777777777788888888888888888888887777777777777776666665555555554444444444443333 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0028
    TIGR02169 753 eleekkeelkeleaeieeleeklaklkealedleaelsee 792
                  ++e+ k+ +++l  e+++++++l++  + ++dle++ +++
  MMETSP1174-20130828|17285_1 254 QKEKIKNAMQKLVGELHDQRRELHRQSKVIDDLERRNARH 293
                  4555566666666666666666666666666666666655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  25.8   0.00021      0.28     234     503 ..      14     293 ..       1     302 [. 0.45

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00021
    TIGR02168 234 leelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleea.......eaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerr..erlkqei.eelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenl 503
                  +++++ e+++ ++ +++++ ++++l ++ ++l+e+++   ++ + +e+el++  +e +el++ + rl++e+  +++rl+ le+e+ ++ee  eel + + e+ e+l++  +  e ++e++e++ ++l+e+       ++e+ e+e+   e+e ++ +  s++ ++++ l+++ +e+e l+ el+q e  r  +++++    e++++ ++++++     +  ++++       ++    ++++e+++++++++  +l++ ++el++ ++ ++ le+ + ++
  MMETSP1174-20130828|17285_1  14 VDAHQVEMQAQQKVTEDQAASIATLHSQQEALQESIQAGIERATHAESELRARSDEAEELRTHKGRLNTELLGAQSRLALLEAEEGRIEELEEELARAQGEDLEDLTTRLAAAEPFRERYEEATKALNEKsqafilvAKEKDEVEQLHLEAEMKASRGMSDLVSIRKALRQAVSEVEALRIELHQREIDRpaDNTQRGGgPEENNNSHKNQSQSTGAPSPSSSTKPSPSPPPSKAGGGIQQKEKIKNAMQKLVGELHDQRRELHRQSKVIDDLERRNARH 293
                  3334444444444444444455555555555555555555555555555555555555555555555555555555555555554444444444444444444444444444444444444444444443000000033344444444444444444444455555555555555555555444433222001111111012222222223333333334444455555555666667777777777777777777777777777777777777766665 PP

>> TIGR01666  YCCS: hypothetical membrane protein, TIGR01666
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.3   9.6e-05      0.13     270     373 ..      20     125 ..      12     183 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 9.6e-05
    TIGR01666 270 llelqaqackeiarsirlrkpyqh..dkrveralleldaslellraerrddkdllkd.lgfllnnlraiekqlaqvesedvakeeleaelddeeahglkdiwarisa 373
                   ++ q +  ++ a+si   ++ q   ++ ++  ++   ++ + lra r d++++l++  g l  +l   + +la +e e+   eele+el+  + + l+d+ +r+ a
  MMETSP1174-20130828|17285_1  20 EMQAQQKVTEDQAASIATLHSQQEalQESIQAGIERATHAESELRA-RSDEAEELRThKGRLNTELLGAQSRLALLEAEEGRIEELEEELARAQGEDLEDLTTRLAA 125
                  356666789999****9999887521556667799999*******5.566666665516777779*************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       418  (0.101902); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 828.89
//
Query:       MMETSP1174-20130828|17292_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|17294_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|17288_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 1620.92
//
Query:       MMETSP1174-20130828|17295_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1160.59
//
Query:       MMETSP1174-20130828|17297_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.76
# Mc/sec: 88.57
//
Query:       MMETSP1174-20130828|17298_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.6   0.0     0.0011   15.5   0.0    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
     0.0089   12.7   0.0     0.0094   12.7   0.0    1.0  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.014   12.1   0.0    1.0  1  TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.4e-07    0.0011     331     387 ..       7      63 ..       3      65 .] 0.93

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.4e-07
    TIGR01137 331 vlkvfgnarvkdlalkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtl 387
                  v+++++ +rv+d+    +vt++  etv+++ +il     +  Pvv+ +g++ g+v+ 
  MMETSP1174-20130828|17298_1   7 VHQKYYLMRVRDVMQCDVVTLQLLETVKNICDILISTSHSGFPVVTSEGHLCGLVLR 63 
                  5568999**********************************************9975 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.9e-06    0.0094     142     193 ..      13      63 ..       5      65 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.9e-06
    TIGR01302 142 skkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtv 193
                   ++v++vm   +v+t +   +++++ ++l +   + +pvv +eg+l glv +
  MMETSP1174-20130828|17298_1  13 LMRVRDVMQ-CDVVTLQLLETVKNICDILISTSHSGFPVVTSEGHLCGLVLR 63 
                  578999**9.9**************************************965 PP

>> TIGR01303  IMP_DH_rel_1: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     1e-05     0.014     145     195 ..      13      63 ..       4      65 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1e-05
    TIGR01303 145 ftqveevmstdlvtlpadlepreafdlleeasrklapvvdadgslagiltr 195
                  + +v++vm  d+vtl+     +++ d+l ++s +  pvv ++g+l g++ r
  MMETSP1174-20130828|17298_1  13 LMRVRDVMQCDVVTLQLLETVKNICDILISTSHSGFPVVTSEGHLCGLVLR 63 
                  579**************999***************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|17304_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|17305_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   13.9   0.0       0.54    7.6   0.0    2.2  2  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0   0.00093       3.8     123     155 ..      41      73 ..      12      76 .. 0.79
   2 !    7.6   0.0   0.00013      0.54     180     252 ..      80     175 ..      73     178 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00093
    TIGR00633 123 klefweallaklekeldkekpvvlcGDlNvahe 155
                  + +++ ++ +kl+++ +++++ v++GDlN+ +e
  MMETSP1174-20130828|17305_1  41 REDELLQAIEKLKAAEARGENGVIIGDLNCGPE 73 
                  5666677777888888889999********987 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00013
    TIGR00633 180 delleagfvDtfrklnpe....keeaYtw....wdyrskareknvGwRiDyilvsealaekvvdslidsevrg...............SDHaPvvl 252
                  + ++eag+ Dtf     +    +++  tw    +   s+  ++  G R D++l+s+++a+ v +s+ + ++                 SDH  +++
  MMETSP1174-20130828|17305_1  80 NYVVEAGYRDTFLDGDANnklgQRHDVTWdpknFLNASGPHKDCPGQRCDHVLISQRMAALVDHSKTRASILFaeevvpirqgikstlSDHYGLLI 175
                  556666666666543322011133455553333334445567778*****************9998888776555666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.67
# Mc/sec: 374.30
//
Query:       MMETSP1174-20130828|17306_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1362.47
//
Query:       MMETSP1174-20130828|17303_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-53  177.6   0.0    1.1e-52  177.1   0.0    1.1  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
      1e-13   49.2   0.0    1.4e-13   48.7   0.0    1.3  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0   5.1e-56   1.1e-52       1     282 [.     111     404 ..     111     411 .. 0.88

  Alignments for each domain:
  == domain 1    score: 177.1 bits;  conditional E-value: 5.1e-56
    TIGR00737   1 ignleLksrvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiaedekpisvQlagsdpdvmaeaAk.iaeelgadiiDlNmGCPvkkitkkgaGsallkep.eliekivkavveavevPVTvKiRiGwdeehinveeaariae....daGaqavalHgRTraqlyeGeanwdiiarvkqavk........iPVignGDitspedAkamLee.tg.adgvligRgalGkPwlfkeieqylttgklkkaptlaeklaailrhlqlladyyg.eekglreaRKhva 282
                  i+ ++ ++++ +aPl+ v +l+fRr++k+++a +++ Em  + +l+  +++   ll+++++e + +vQ+ag+ pd+++  A+ i  e ++d +DlNmGCP++ ++ +g+Gsal+++  ++i+ iv+ + +a +   T+K+R+Gw e++  ++e++r +e    d+ ++a+++HgR r q+y+ +a+w++i+rv  + +        iP+ignGDi+s +d ++ L   +g     +++Rgal kPwl +ei++       +  +t +e+l++++  ++   ++ g +++g++++R+ + 
  MMETSP1174-20130828|17303_1 111 IKLVDFSNKIYVAPLTTVGNLPFRRIMKHFKADITCGEMAMAANLLGGKNSEWALLRRHSSEDIFGVQVAGAFPDMLTRVAElISGEIKTDFVDLNMGCPIDIVVNRGSGSALMNTGgHRIQDIVRGMGKALNCSLTLKMRLGWSEKKPLAHEIVRNVEridaDQRVAAIMVHGRSRLQRYSKTADWNYIHRVASQPQnedhsrarIPIIGNGDIFSYTDWERHLAAnSGiSTCCMLARGALIKPWLPTEIKEQ-----RHWDITSKERLDILKDFCHFGLEHWGsDQQGVNKTRRFLL 404
                  56678899**********************************************************************************************************985389**************************9888888777766221266789************************98654445566677**************999886414415678***************9864.....3336778999999999999988888878999999998765 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0     7e-17   1.4e-13       1     171 [.     118     292 ..     118     407 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 7e-17
    TIGR00742   1 rklsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkkk..llkfseeekPvalqlggsdpedlakcaklaee.fgydeinlnvGcPsdrvqngnfGaclman.adlvadivkamkeaveiPvtvktriGidelds.yeelvdfveiv.sdkGikefivharkawlkGls 171
                  +k+ vaP+  + +  fr +++ +  +++   em  a  ++ g + +  ll  +  e+   +q++g  p+ l+++a+l       d ++ln+GcP d v n   G+ lm    + + div+ m +a +  +t+k r+G  e++   +e+v  ve + +d+ +   +vh r   l+ +s
  MMETSP1174-20130828|17303_1 118 NKIYVAPLTTVGNLPFRRIMKHFKADIT-CGEMAMAANLLGGKNSEwaLLRRHSSEDIFGVQVAGAFPDMLTRVAELISGeIKTDFVDLNMGCPIDIVVNRGSGSALMNTgGHRIQDIVRGMGKALNCSLTLKMRLGWSEKKPlAHEIVRNVERIdADQRVAAIMVHGRSR-LQRYS 292
                  5899*****************9977765.689*******9997654337899999*******************99876549**************************872579************************9996414566777777625777*******9964.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.70
# Mc/sec: 929.58
//
Query:       MMETSP1174-20130828|17309_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1379.50
//
Query:       MMETSP1174-20130828|17307_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   21.3   0.0    5.5e-05   20.9   0.0    1.1  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-08   5.5e-05      53     123 ..      19      88 ..      14      98 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.3e-08
    TIGR00986  53 DrivaLkdivpptkrqkiadkystttsfvkkalsfaGkaaWavstsaLLlGvPlalslaeeqqliemekei 123
                  Dr+  Lk + +     ++     ++++  + +  +a + aW+ +ts +L+  P+ + +a e+ lie ek i
  MMETSP1174-20130828|17307_1  19 DRVGGLKGLLSQF-SSTFKRATAFSAASYSILKRKAFRIAWVGTTSCILVFLPILIEVAREKTLIEQEKII 88 
                  6666677766643.34566666666666677778999*******************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|17317_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 297.74
//
Query:       MMETSP1174-20130828|17320_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|17321_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:01.46
# Mc/sec: 65.09
//
Query:       MMETSP1174-20130828|17316_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-42  141.1   0.0    4.5e-35  118.4   0.0    2.5  3  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
    3.9e-36  122.5   0.0    1.7e-34  117.1   0.0    2.1  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   2.2e-38   4.5e-35     218     467 ..       2     285 ..       1     293 [. 0.83
   2 !   19.8   0.0   1.3e-08   2.7e-05     467     536 ..     329     398 ..     318     403 .. 0.84
   3 ?   -3.0   0.0     0.097     2e+02     648     676 ..     513     541 ..     503     543 .. 0.86

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 2.2e-38
    TIGR01967 218 satidverfskhfn.naPiievsGrtyPvevry..rPleeeqede............idldqleallaavdelveeek.........GdiliflpGereirdaaealrkrkl....rhveilPlyarls..aeeqqrvfq..phsgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrPeftdPeilrtnlasvilqmlal.rlGdiaaf..PfieaPdkrairdGlrlleeldalke 467
                  sat+d  +f ++f  n+ ++   Gr++Pv+v+     l  + +++            +  +++e +l+ v++l++  +         G il+fl+G  +i   a +l+  +         i+ l++ +s  ++eq+  f+  p+   +ivlatn+aet +t+P + yv+dtG  +   ys + +++rl  +   ++sa qr+Gr Grv++G+c rl s   f +  e++ Pei r  l  + lq++a+ +l ++++f    +++P+++a++  +++l + +a+++
  MMETSP1174-20130828|17316_1   2 SATVDASKFVNYFGrNTRVLLAEGRAFPVKVHTleDCLRMT-GKNpnslspgpyhgdMRFNNDEDMLDMVEDLLNLIEcqqrddptkGAILVFLAGLAQINALAHKLEGSRNfgnrSRYTIVTLHSSISttYAEQRVAFDipPQGVCKIVLATNIAETGVTIPDVVYVVDTGRVKEMGYSAKKNMKRLVENFAPRSSAMQRQGRAGRVQPGVCYRLVSVPHFSHLDEYAIPEIKRMALEEICLQVMAIpGLAAPSEFlaSVLDPPHPNAVQAAMKVLLNASAIER 285
                  9************7266899999******997522333332.222245778888876555667777777777765333334566699********************9875422214578*******99334799888975578889*****************************************8888899*************************************************998868*******65589***************99999986 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.3e-08
    TIGR01967 467 edeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharf 536
                  ++e    lt++Gr+la lP d   ++ml+ a  + c+ ++l i+++ + + +   P+   +     ha +
  MMETSP1174-20130828|17316_1 329 DEEPLWSLTDLGRHLATLPTDVSTGKMLVLAMLFRCFDPILTIVACAAEKSVFLDPMSMAKMDGSVHAAW 398
                  4444489*************************************99888888888887777777777766 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.097
    TIGR01967 648 akksPkwvmaaelvetsklyarlvakieP 676
                  + k  +wv  a  + t++++ r v+ + P
  MMETSP1174-20130828|17316_1 513 TSKVQQWVTFAVKMKTTRVFLRDVTTVIP 541
                  56889*****************9988766 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0022       4.4     153     184 ..       1      33 [.       1      42 [. 0.84
   2 !  117.1   0.0   8.4e-38   1.7e-34     209     397 ..      86     283 ..      53     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0022
    TIGR01970 153 msatLdgerlselld.eapvveseGrsfPveir 184
                  msat+d +++ + +  +  v+ +eGr+fPv + 
  MMETSP1174-20130828|17316_1   1 MSATVDASKFVNYFGrNTRVLLAEGRAFPVKVH 33 
                  9******999888761566789********986 PP

  == domain 2    score: 117.1 bits;  conditional E-value: 8.4e-38
    TIGR01970 209 esgsvLvfLPGqaeirrveeaLaer..lda.sevelcPLyGelel..eaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaerlaaaaepeilqadLaglalelar.WGak.psdl..rfldaPPaaalaaakeLLqrlgal 397
                  + g +LvfL G a+i+ ++++L+ +  +++ s+ +++ L+  +++  ++q+ a + +++G  k+vLatniaet +ti+ v  v+D+g  ++  +  k  + rL  +   ++sa qr+GraGr++pGvc+rL s ++ ++l + a pei +  L ++ l++++  G   ps++  + ld P   a+ aa ++L   +a+
  MMETSP1174-20130828|17316_1  86 TKGAILVFLAGLAQINALAHKLEGSrnFGNrSRYTIVTLHSSISTtyAEQRVAFDIPPQGVCKIVLATNIAETGVTIPDVVYVVDTGRVKEMGYSAKKNMKRLVENFAPRSSAMQRQGRAGRVQPGVCYRLVSVPHFSHLDEYAIPEIKRMALEEICLQVMAiPGLAaPSEFlaSVLDPPHPNAVQAAMKVLLNASAI 283
                  3567******************864114434**********99853379*************************************************************************************************************9765168777887522456666556666667777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.90
# Mc/sec: 922.46
//
Query:       MMETSP1174-20130828|17325_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1174-20130828|17326_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 478.93
//
Query:       MMETSP1174-20130828|17324_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1065.81
//
Query:       MMETSP1174-20130828|17328_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1174-20130828|17331_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|17329_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1568.16
//
Query:       MMETSP1174-20130828|17332_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-13   48.4   0.0    2.8e-13   47.6   0.0    1.3  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   6.9e-17   2.8e-13      13     128 ..     101     216 ..      94     218 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 6.9e-17
    TIGR00530  13 pkkkavlvvanHqsnlDiltlsaafapplvfiAKkeLkeipflgilllltgavfidRen....kraiasllkaakkllkegr...avgvFpeGtrskgrkilefKkGalkiAikakvpilPvv 128
                  p+ +a +vvanH s lD+ ++ +  a   + + ++e  +ip++g + +l  ++f+dR +       ++s+++ +   l   r    +++FpeGt+++   +  fK Ga+     a+ p++Pv+
  MMETSP1174-20130828|17332_1 101 PTTQARMVVANHTSFLDVALMWRLGA---SSVSRIENSRIPVFGAITKLFQCIFVDRDDpnsrVNTKNSIIRRMGSSLSTSRpwpHMVIFPEGTTTNATAVIDFKLGAFL----AEKPVQPVA 216
                  778899************99988877...9999************************9842112234555565555555554233699*******************995....344666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.69
# Mc/sec: 665.68
//
Query:       MMETSP1174-20130828|17334_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|17336_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|17335_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|17333_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 708.97
//
Query:       MMETSP1174-20130828|17339_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 776.59
//
Query:       MMETSP1174-20130828|17338_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1501.82
//
Query:       MMETSP1174-20130828|17342_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   12.8   0.0     0.0074   12.2   0.0    1.2  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.8e-06    0.0074      80     156 ..      69     142 ..      14     151 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-06
    TIGR00870  80 egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgas 156
                  +++++ ++L+++ +  ++  +  l+  l ++    +l     d+++++ +   tal+lA+   ++ +v +Ll+ ga+
  MMETSP1174-20130828|17342_1  69 KPDTEMTALMLACQ--YNSFNPSLKTSLSHETV-SNLIAAGADTTLTNPFTKVTALHLAVKYADLVTVDALLAAGAN 142
                  46888888998888..88888888888888744.55667778999999999************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 2299.07
//
Query:       MMETSP1174-20130828|17341_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1969.94
//
Query:       MMETSP1174-20130828|17337_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 2347.52
//
Query:       MMETSP1174-20130828|17344_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-139  460.5   0.0   7.8e-139  460.1   0.0    1.2  1  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
    2.5e-66  220.5   0.0    3.9e-66  219.9   0.0    1.3  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.8e-13   48.5   0.0    3.6e-13   47.5   0.0    1.5  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.7e-10   38.2   0.0    5.6e-08   30.0   0.0    2.1  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    2.8e-10   36.6   0.0    4.1e-10   36.1   0.0    1.2  1  TIGR01815 TrpE-clade3: anthranilate synthase
    2.2e-08   30.7   0.1    5.6e-08   29.3   0.0    1.5  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    8.6e-08   29.5   0.0    3.1e-06   24.4   0.0    2.2  2  TIGR00552 nadE: NAD+ synthetase
      4e-05   21.3   0.0      0.042   11.5   0.0    2.4  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
     0.0016   15.4   0.0     0.0028   14.6   0.0    1.3  1  TIGR00342 TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
     0.0051   13.7   0.0     0.0073   13.2   0.0    1.1  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
     0.0054   13.9   0.0      0.095    9.9   0.0    2.2  2  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
  ------ inclusion threshold ------
      0.046   10.4   0.0      0.078    9.6   0.0    1.4  1  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
      0.048   11.1   0.0      0.088   10.2   0.0    1.3  1  TIGR00268 TIGR00268: TIGR00268 family protein


Domain annotation for each model (and alignments):
>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.1   0.0  2.5e-141  7.8e-139       2     309 ..     235     546 .]     234     546 .] 0.98

  Alignments for each domain:
  == domain 1    score: 460.1 bits;  conditional E-value: 2.5e-141
    TIGR00884   2 lieeaveeirekvgd.akviialsGGvdssvaavllhkaigdrltavfvdkGllrkgeaekvkktfkeklglnlvvvdakeeflkklkGvtdPeekrkiiGrvfievfeeeakklkeveylvqGtlypdviesa...gkakkikshhnvgGlpeelklklvePlrelfkdevrklgkelGlpeelvarqPfPGPGlavrvlGevtkekleivrkadaiveeelkkagleeklwqafavlldvksvGvkGdkrtydkvvalravesldamtadvaelpydlleriskrivneveevsrvvyditskPPatiew 309
                  l++e ++e+r+kvg+  +vi a+sGGvds+vaavl+h+aigdr++a++vd+G lr +ea +v   ++ +lg+nl+ +da+++f+ +l+Gv dPe+krkiiG+ fie f+e+++k++ +++l+qGtlypdvies    g +++ik+hhnvgGlp+++klkl+ePlrelfkdevr+lg  lG+ ee v+r+PfPGPGla+rvlGevt+ +le++r+ad i+++el++a++++ + qaf+vll+vksvGv+Gd rty++v a+r v+++d mtad+ ++py++l  is+ri+nev++++rv+ydi+skPPatiew
  MMETSP1174-20130828|17344_1 235 LADEFITEVRKKVGEdGHVIGAVSGGVDSTVAAVLMHRAIGDRFHAILVDNGCLRLNEATEVLTRLNGELGINLTCIDAADRFVGALAGVLDPEKKRKIIGNLFIECFDEVSNKIDRADFLLQGTLYPDVIESIsykGPSATIKTHHNVGGLPDHMKLKLIEPLRELFKDEVRSLGVVLGIREESVWRHPFPGPGLAIRVLGEVTHPRLEMLRQADDIMIQELHNANVYRLIGQAFVVLLPVKSVGVMGDGRTYENVCAVRCVQTTDYMTADWYHMPYEVLGTISSRIINEVRGINRVTYDISSKPPATIEW 546
                  78999********96479*******************************************************************************************************************977677****************************************************************************************************************************************************************************9 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   1.2e-68   3.9e-66       1     187 [.      28     226 ..      28     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 219.9 bits;  conditional E-value: 1.2e-68
    TIGR00888   1 ilvldfgsqYaqliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifel....gvPvlGiCyGmqllakalGgeveraekreygkaele........vldedelfkglekelkvWmshgDkvkelPegfkvlaksencpvaalkkeekklyGvqfhPevthtekGkellenfvkdvcka 187
                  i +ldfgsqY++liaRr+rel+vy+el+++ ++ e +++++  giilsGgP+sv++  +++v++ki+el    g+PvlGiCyGmq +++++Gg+v+ + kreygka ++          ++d +f+g  +e+++WmshgDkv++lPegf  +a+s+n+++aa+++ ekk+yG+qfhPevth+ kG ++l+nfv++vc+a
  MMETSP1174-20130828|17344_1  28 IAILDFGSQYSHLIARRVRELNVYCELYSCLVEPEIMEQTNLLGIILSGGPNSVYEASSPHVHTKIWELiaarGIPVLGICYGMQEITHVFGGTVSPGTKREYGKAMVQrsaaalegAGNTDVMFDGCGDEFQMWMSHGDKVTALPEGFGSIARSANSEHAAIANPEKKIYGLQFHPEVTHSPKGPKVLSNFVVNVCNA 226
                  789******************************9999****************************999866679*******************************9997333332222367899*************************************************************************85 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   1.1e-15   3.6e-13      40     190 ..      64     220 ..      42     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 1.1e-15
    TIGR00566  40 eallpllsivisPGPctPdeaaiss..leliehlaGk.lPilGvClGhqalaqafGadvvraekvkhGkv....seiehngaavfaglfn..PdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilselGkellanfl 190
                   + + ll i++s GP +  ea+     +++ e +a + +P+lG+C G q ++ +fG+ v+  +k  +Gk     s+  ++ga+    +f+   d ++    h   v   +l++ +   a + ++ e  ai + ++++ G+qfhPe   s +G ++l+nf+
  MMETSP1174-20130828|17344_1  64 MEQTNLLGIILSGGPNSVYEASSPHvhTKIWELIAARgIPVLGICYGMQEITHVFGGTVSPGTKREYGKAmvqrSAAALEGAGNTDVMFDgcGDEFQMWMSHGDKV--TALPEGFGSIARSANS-EHAAIANPEKKIYGLQFHPEVTHSPKGPKVLSNFV 220
                  444555669*********999987655788888887758*****************************86333356777888888888884336677666666555..5688888888887776.899*******************************7 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.8e-10   5.6e-08     170     266 ..      20     121 ..       3     141 .. 0.82
   2 !    6.1   0.0    0.0031      0.99     322     351 ..     187     216 ..     167     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.8e-10
    TIGR01368 170 kkegkklrvvvidlGvKen..ilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdP..aaveeaietvkkllea.kiPifGIclGhqllalalgak 266
                  +  + + +++++d+G   +  i r++ + +v  ++++  ++ e ++++n  gi+ls GP     a+  ++++++++l+ a  iP++GIc G q ++  +g+ 
  MMETSP1174-20130828|17344_1  20 QLANARPQIAILDFGSQYShlIARRVRELNVYCELYSCLVEPEIMEQTNLLGIILSGGPNSVyeASSPHVHTKIWELIAArGIPVLGICYGMQEITHVFGGT 121
                  34445568*******98763367999999999999********9999999*********99744566788999****99878*************9999976 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0031
    TIGR01368 322 veglehkelpvfsvQyHPeaspGphdteyl 351
                   + +++ e++++ +Q+HPe +  p+  ++l
  MMETSP1174-20130828|17344_1 187 HAAIANPEKKIYGLQFHPEVTHSPKGPKVL 216
                  56799999************9999877665 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.3e-12   4.1e-10     510     696 ..      19     214 ..       5     237 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.3e-12
    TIGR01815 510 vakvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdf...dvketi.kaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvl...ep....dvlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGea 696
                  ++  ++  +i ++d    + h +a  +r+           v  e++++++   ++ls Gp    +    +v++ i +   ar++pv+G+c G+q +   fGG ++  ++  +Gka   r     e+    dv+f+g ++e+ +   h    +   lp+ +   a s++    ai   ++ +  +qfhpe   + +G  
  MMETSP1174-20130828|17344_1  19 CQLANARPQIAILDFGSQYSHLIARRVRELNVYCELYSCLVEPEIMEQTNLLGIILSGGPNSVYEAsspHVHTKIwELIAARGIPVLGICYGMQEITHVFGGTVSPGTKREYGKAMVQRSAaalEGagntDVMFDGCGDEFQMWMSHG--DKVTALPEGFGSIARSANSEHAAIANPEKKIYGLQFHPEVTHSPKGPK 214
                  334445568899999999999999999999988888888888899999999999******986554111677767245678*********************************97555431112222226**********9977775..78899**********************************887766654 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10   5.6e-08      48     201 ..      64     220 ..      50     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.8e-10
    TIGR01823  48 lellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvss.........vkstryhsLyan..kesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknfl 201
                  +e+ +l+  i++  GP     a    +  +++el ++  +PvlGiC G+q ++   G +++      +G+    + + a    g ++         ++    h   +   +e+  s     ++ + +++   ++ + +k i+G+q+hPe   s k+  k+l+nf+
  MMETSP1174-20130828|17344_1  64 MEQTNLL-GIILSGGPNSVYEASSPHVHTKIWELIAARGIPVLGICYGMQEITHVFGGTVSPGTKREYGKAMVQRSAAALEGAGNTDvmfdgcgdeFQMWMSHGDKVTalPEGFGS-----IARSANSE-HAAIANPEKKIYGLQFHPEVTHSPKG-PKVLSNFV 220
                  5554444.47778899999999999************************************9999999986543333332222222233224433555555554333300233333.....34444433.4567788888***************7.9*****96 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     1e-08   3.1e-06       7      93 ..     233     320 ..     228     338 .. 0.79
   2 ?    2.7   0.0     0.041        13     156     185 ..     395     424 ..     393     426 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1e-08
    TIGR00552   7 eeled.flkekvkksgakgvvlG.lSGGiDSavvaalavealgkeevlalilpesnqaseqdvqdalalveklgietkeikiepiaasl 93 
                  ++l d f++e  kk g  g v+G +SGG+DS+v a+l ++a+g ++++a+++ ++    ++ ++  + l  +lgi+ + i+ ++ +  +
  MMETSP1174-20130828|17344_1 233 QNLADeFITEVRKKVGEDGHVIGaVSGGVDSTVAAVLMHRAIG-DRFHAILVDNGCLRLNEATEVLTRLNGELGINLTCIDAADRFVGA 320
                  5566669999999999999999978******************.7*******9999888878888888999999999999888876644 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.041
    TIGR00552 156 laplaellKtqvkeLakelnvPeeiiekaP 185
                  ++pl el+K +v+ L   l++ ee + ++P
  MMETSP1174-20130828|17344_1 395 IEPLRELFKDEVRSLGVVLGIREESVWRHP 424
                  78*****************99877666655 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0025       0.8      62      82 ..      92     112 ..      59     119 .. 0.83
   2 !   11.5   0.0   0.00013     0.042     171     196 ..     194     220 ..     160     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0025
    TIGR01855  62 llaekvvkkkkpvlgiClGmQ 82 
                  ++ e +++++ pvlgiC GmQ
  MMETSP1174-20130828|17344_1  92 KIWELIAARGIPVLGICYGMQ 112
                  4567888999*********** PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00013
    TIGR01855 171 kdnivgvQFHPEkSgk.tGlkllknfl 196
                  +++i+g+QFHPE  ++ +G k+l+nf+
  MMETSP1174-20130828|17344_1 194 EKKIYGLQFHPEVTHSpKGPKVLSNFV 220
                  689*********987548******997 PP

>> TIGR00342  TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.8e-06    0.0028     169     222 ..     247     301 ..     246     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.8e-06
    TIGR00342 169 vgsqgkvlaLlSgGiDSpVaaflvmkR.Gcrvvavhfknepaasekakekvekla 222
                  vg  g+v+  +SgG+DS Vaa l+ +  G r +a+ ++n   + ++a e +++l 
  MMETSP1174-20130828|17344_1 247 VGEDGHVIGAVSGGVDSTVAAVLMHRAiGDRFHAILVDNGCLRLNEATEVLTRLN 301
                  78899****************987764689999**99999999999999888875 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.3e-05    0.0073     231     282 ..     229     280 ..     197     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.3e-05
    TIGR01536 231 eelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeaksevkt 282
                  +  +++l + ++  v+k++  d  v   +SGG+DS++ a+++++ +  +++ 
  MMETSP1174-20130828|17344_1 229 DWNMQNLADEFITEVRKKVGEDGHVIGAVSGGVDSTVAAVLMHRAIGDRFHA 280
                  55789999**********************************9999877765 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0003     0.095      67      91 ..      89     114 ..      79     136 .. 0.79
   2 ?    1.4   0.0      0.11        35     185     206 ..     186     207 ..     176     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0003
    TIGR01737  67 vlkevke.laekGkpvlGiCnGfqil 91 
                  v +++ e +a++G pvlGiC G+q +
  MMETSP1174-20130828|17344_1  89 VHTKIWElIAARGIPVLGICYGMQEI 114
                  556666614789***********955 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.11
    TIGR01737 185 niagivneegnvlglmPhPera 206
                  + a+i+n e+++ gl  hPe  
  MMETSP1174-20130828|17344_1 186 EHAAIANPEKKIYGLQFHPEVT 207
                  5699***************965 PP

>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00025     0.078       3      23 ..     253     273 ..     251     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00025
    TIGR00420   3 vivglsgGvDssvsalllkkq 23 
                  vi ++sgGvDs+v+a+l+++ 
  MMETSP1174-20130828|17344_1 253 VIGAVSGGVDSTVAAVLMHRA 273
                  78899************9975 PP

>> TIGR00268  TIGR00268: TIGR00268 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00028     0.088       5      46 ..     243     285 ..     239     315 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00028
    TIGR00268   5 lrqflkefkkvliaysGGvdssllaavlsdagle.vlaitvvs 46 
                  +r+ ++e  +v+ a sGGvds++ a++++ a+ +   ai v  
  MMETSP1174-20130828|17344_1 243 VRKKVGEDGHVIGAVSGGVDSTVAAVLMHRAIGDrFHAILVDN 285
                  6677777779999*********999999886655145666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.63
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|17349_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1174-20130828|17349_2  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|17351_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.2   0.0      5e-06   24.1   0.0    1.5  2  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.15   6.3e+02      31      60 ..      44      75 ..      40      95 .. 0.71
   2 !   24.1   0.0   1.2e-09     5e-06     107     173 ..     122     188 ..      99     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.15
    TIGR02821 31 vylPp..qaaegkvPvlyylaGltcteenfli 60
                 v+ Pp  ++ +++ Pvly   G  + e+n   
  MMETSP1174-20130828|17351_1 44 VWCPPgyDTSTQHYPVLYCHDGQNAMEDNTSW 75
                 56666223556678999988888888877654 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 1.2e-09
    TIGR02821 107 teePwsahyrmysyvveelpalvaaefPl..daerqgitGhsmGGhGalvialknPdlfksvsafaPiv 173
                   + Pw++ y   +yv++el+ +++ ef      e+++ +G s+GG+ +++   ++Pd+f  v+ ++P  
  MMETSP1174-20130828|17351_1 122 GDSPWAHMY--VDYVAKELKPMIDSEFRTlsGPEHTSAMGTSLGGQASFLSLWRHPDVFGNVACLSPAF 188
                  578999988..59*************9752246899***************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1264.54
//
Query:       MMETSP1174-20130828|17352_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-63  212.8   0.0    1.9e-63  212.4   0.0    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    1.2e-35  120.9   0.0    1.6e-35  120.4   0.0    1.2  1  TIGR01788 Glu-decarb-GAD: glutamate decarboxylase
    5.7e-16   55.8   0.0    9.2e-16   55.1   0.0    1.3  1  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
    6.3e-10   36.2   0.0    3.4e-09   33.7   0.0    1.9  2  TIGR03402 FeS_nifS: cysteine desulfurase NifS
    1.1e-07   29.3   0.0      2e-07   28.5   0.0    1.3  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    4.2e-06   23.3   0.6     0.0074   12.6   0.4    2.1  2  TIGR03811 tyr_de_CO2_Ent: tyrosine decarboxylase
    5.3e-06   23.5   0.0      8e-06   22.9   0.0    1.2  1  TIGR02006 IscS: cysteine desulfurase IscS
    0.00015   18.5   0.0    0.00032   17.5   0.0    1.5  2  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    0.00024   18.0   0.0    0.00038   17.4   0.0    1.4  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    0.00031   17.5   0.0    0.00049   16.9   0.0    1.2  1  TIGR01979 sufS: cysteine desulfurase, SufS family
  ------ inclusion threshold ------
      0.021   11.6   0.0      0.034   10.9   0.0    1.3  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases


Domain annotation for each model (and alignments):
>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.0   5.2e-66   1.9e-63       2     373 ..     109     494 ..     108     496 .. 0.89

  Alignments for each domain:
  == domain 1    score: 212.4 bits;  conditional E-value: 5.2e-66
    TIGR03812   2 eeevleelkearseD.lkyedgrilgsmCtkphpiavkvvkkfle...tnLGDpgLfkGtkkleeevvellgellhl.kealGyivsGGteanilalraaknlakeekk.ekpeiivPesahfsfekaaellglelvkaeldeeykvdvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaafGGfviPflkkkgeklakfDfklkGvksitiDPhkmGlapiPaGgllfrekeylksleveapyLtekk..qatlvGtrsGasaaatyavlkylGreGyrkvveecmeltrylveelkklglepvie.Pvlnivaleaedle.....evekklkek.gwivsvtrapkalrlvlmphvkkehieefledlk 373
                  +e++l+ +++ ++ D + + dg+i g++ t  ++    ++++f     +n   pg+++  ++++ evv+++ ++ +  +ea+G  ++GGte+ ++a++a ++   + k   +p+i+v ++ah +f ka   +g+ + +++ d+e ++d+ +++++++ nt+++vg a     G vD+i++++ +a+  ++ +hvD  +GGf +Pf++k g  l++fDf+++Gv+si+ DPhk G+ap  a  ++fr+ke+ + +       t      at++G r+G ++aa++a +  +G++Gy +  + ++  t++++  +++++  +++    + +va++ e+ +      + + lk++ gw + +t+ p    l +   v++ + ++fle+l+
  MMETSP1174-20130828|17352_1 109 KEKLLALMDSRETLDtVGWTDGKISGTVYTGDKEHRAFISSIFARwcfANPLHPGIHPSLRQMDAEVVRMVINMYNGdSEACGAFTTGGTESILMAMKAYRDWGLKVKGiTEPNIVVCATAHAAFYKAGLYFGIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDCCLGGFLVPFMEKAGFPLPPFDFRVEGVTSISCDPHKYGFAPKSASVVMFRRKELRRFMYCAVTDWTGAIysTATMTGSRTGGAVAAAWAAMCKMGEDGYVASTKAIVGATKKIAAGIEAIEGVKLVGrADVCVVAFDGEEGSglncyAIGDCLKSQfGWDLGTTQRPPSCHLAV-TMVSATNADRFLEELR 494
                  5667777777777772469999*****999888877777777765222677789******************99985379**********************9988888899******************************************************************************************************************************************9999887766665533499***********************************************9988887699******9997663334466788988789**99999998888765.4577778888888875 PP

>> TIGR01788  Glu-decarb-GAD: glutamate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.0   4.4e-38   1.6e-35      75     388 ..     165     465 ..      82     487 .. 0.85

  Alignments for each domain:
  == domain 1    score: 120.4 bits;  conditional E-value: 4.4e-38
    TIGR01788  75 yPqtaelenrcvnmladLfnaelkdeeavGtstiGsseaimLgglamkkrWrkrmkaaGkdadkPnlvlgsavqvcwekfaryfevelrlvpvekdrlvldpeevvelvdentigvvailGttytGeledvkklndlLeeleaktgldvpihvdaasGGfivPfve....pdleWdfrlprvvsinvsGhkyGLvypGvGwviwrdeeaLpeeLifkvnyLGgeeetftlnfsrpasqvvaqyynflrlGkeGyrkimqklldvaralaeeleklgafeilskgegvPlvafklkdkadteytlldlsekLr.erGWiv 388
                  +P + ++++ +v m+ +++n++   +ea G+ t+G +e+i+++  a+ + W  +     k   +Pn+v+ + ++ ++ k+  yf + +++vp ++++  +d  ++ +++d nt+++v+      tG+++++++++ l ++       +v +hvd   GGf+vPf+e    p   +dfr + v si+   hkyG++      v++r +e          ++ G+  +t t+  sr++  v a +  + ++G++Gy + ++++  +++++a  +e+++ ++++ +  +v +vaf  ++   +  + +++ + L+ ++GW +
  MMETSP1174-20130828|17352_1 165 HPSLRQMDAEVVRMVINMYNGD---SEACGAFTTGGTESILMAMKAY-RDWGLK----VKGITEPNIVVCATAHAAFYKAGLYFGIFVKEVPADSEQ-RMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARAR------NVGMHVDCCLGGFLVPFMEkagfPLPPFDFRVEGVTSISCDPHKYGFAPKSASVVMFRRKELRRFMYCAVTDWTGAIYSTATMTGSRTGGAVAAAWAAMCKMGEDGYVASTKAIVGATKKIAAGIEAIEGVKLVGR-ADVCVVAFDGEEG--SGLNCYAIGDCLKsQFGWDL 465
                  688999**************98...89*************9776665.468866....456899****************************99876.5899*******************************98765554......599**************7633336678********************************9988777778889*********************************************************9*99986.689*****98887..77999999999983479976 PP

>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   2.5e-18   9.2e-16     201     435 ..     212     440 ..     184     442 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 2.5e-18
    TIGR03799 201 alkhygyeglailvserGhyslkkaadvlGiGrdnlvavktdennridvdklreklkelkeknikvlaivGvaGttetGnvdPldeladiaqeldchfhvdaawGGatl.lsekyrkllk....GieradsvtidahkqlyvPmGaGlvlfkdPalvkaiehhaeyilrkGskdlGshtleGsrsgmaml.vyaslkiigrkGyellidqsiekakyfaelikqqddfelvtePelcllty 435
                  +lk  g+ +  i+v    h ++ ka   +Gi  +   +v++d+++r+d+ +lr+ +        + +aivG a    tG+vdP++++a++a+  ++ +hvd   GG  + + ek    l      +e   s++ d hk  + P  a +v+f+  +l + +   a  +         + t+ Gsr+g a+   +a++  +g +Gy    +  +  +k+ a+ i++ +  +lv + ++c++++
  MMETSP1174-20130828|17352_1 212 GLKVKGITEPNIVVCATAHAAFYKAGLYFGIFVK---EVPADSEQRMDLGRLRAAMD------SNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDCCLGGFLVpFMEKAGFPLPpfdfRVEGVTSISCDPHKYGFAPKSASVVMFRRKELRRFMYC-A--VTDWTGAIYSTATMTGSRTGGAVAaAWAAMCKMGEDGYVASTKAIVGATKKIAAGIEAIEGVKLVGRADVCVVAF 440
                  577788888899*************999999654...6899***********99875......4679***************************************754355555554432223689999**********************9887665433.3..223334456789*******999862689*******************************************9875 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.2        76     259     311 ..      68     119 ..      58     127 .. 0.86
   2 !   33.7   0.0   9.2e-12   3.4e-09      59     173 ..     188     304 ..     163     358 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.2
    TIGR03402 259 kvkalRdrlekgllekipkarvnGdkekRlpntvnisfefiegeailllldke 311
                   + a+R+++  +l +++++ +v   ke R p t  +  + +e e +l l+d++
  MMETSP1174-20130828|17352_1  68 MIPAVREKIDGELNKAVEDFKVSFAKEVRSPCT-RLPAQGMEKEKLLALMDSR 119
                  56789************************9987.57889999****9999976 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 9.2e-12
    TIGR03402  59 eeeiiftsggtesdntaiksalaakkek.....khiittavehpavlslceyLekegykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakekgvlfhtDa 173
                  e    ft+ggtes  +a+k+      +       +i++ a  h+a  ++  y    g+ v+++p d+e r+dl  l++a++ +t+ +    +   +G + pi+++a+la+ ++v  h+D 
  MMETSP1174-20130828|17352_1 188 EACGAFTTGGTESILMAMKAYRDWGLKVkgitePNIVVCATAHAAFYKAGLY---FGIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDC 304
                  33447**************986554444011125667777777777666655...599**************************999999999*************************97 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   5.3e-10     2e-07      63     217 ..     192     358 ..     175     367 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.3e-10
    TIGR03235  63 iftsgatesnnlallGlaeygeq.kg..kkhiitsaiehkavlepikfLeenGftvtylevdesGridveelkeairedtllvslmavnnevGslqpireiaevleerevflhvDaaqv...........vgkiavdlsakridlisvsghki.ygPkGiGalvirkrrk 217
                   ft+g tes  +a++  +++g + kg  +  i+  a  h a   +  +    G  v+++++d++ r+d+  l+ a+  +t+++   a    +Gs++pi+++a + ++r+v +hvD   +           +    +d + + +  is+  hk  ++Pk   +++ r+++ 
  MMETSP1174-20130828|17352_1 192 AFTTGGTESILMAMKAYRDWGLKvKGitEPNIVVCATAHAAFYKAGLYF---GIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDCCLGgflvpfmekagFPLPPFDFRVEGVTSISCDPHKYgFAPKSASVVMFRRKEL 358
                  59******************96523322568999999999988877765...999****************************999*****************************8753222221111113334568888889999999999746999999999998654 PP

>> TIGR03811  tyr_de_CO2_Ent: tyrosine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00035      0.13     226     324 ..     224     308 ..     212     315 .. 0.80
   2 !   12.6   0.4     2e-05    0.0074     374     445 ..     331     396 ..     326     425 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00035
    TIGR03811 226 lvpqtkhyswlkaadiigigldqvipvpvdsnyrldinelekiirelaaekipilgvvgvvgsteegavdsidkivalreklvkegiyfylhvdaaygg 324
                  +v  t h ++ ka    gi +     vp ds+ r+d+ +l + +      +  ++ +vg +     g+vd+i++++al            +hvd++ gg
  MMETSP1174-20130828|17352_1 224 VVCATAHAAFYKAGLYFGIFVK---EVPADSEQRMDLGRLRAAM------DSNTVAIVGSACQYATGSVDPIQQMAALARAR-----NVGMHVDCCLGG 308
                  7889999999999999999755...5799*********997654......556778899999999**********9996432.....233566666665 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2e-05
    TIGR03811 374 aesvtidphkmgyipysaggivikdirmrdvisyfatyvfekgadipallgayilegskagataasvwaahk 445
                    s++ dphk g+ p sa  ++ +   +r  + y a  v + +    a+  +  + gs++g + a+ waa  
  MMETSP1174-20130828|17352_1 331 VTSISCDPHKYGFAPKSASVVMFRRKELRRFM-YCA--VTDWT---GAIYSTATMTGSRTGGAVAAAWAAMC 396
                  67999****************99999998764.444..44444...5677788999*************965 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.1e-08     8e-06      55     180 ..     178     305 ..     168     369 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.1e-08
    TIGR02006  55 evaeligadsrei.vftsGatesdnlaikGvakf.ykskg...khiitsktehkavldtcrelereGfevtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaa 180
                  +v ++ + ds     ft+G tes  +a+k    +  k kg     i+ + t h a  ++  ++   G+ v  ++ +++  +dl +l+aa+  +t+ +   a +  +G +++i+++++l+r+r+v +hvd +
  MMETSP1174-20130828|17352_1 178 MVINMYNGDSEACgAFTTGGTESILMAMKAYRDWgLKVKGitePNIVVCATAHAAFYKAGLYF---GIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDCC 305
                  566677778776548*************99876623444422257999999999999998775...999999*************************99******************************86 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.6   9.5e+02     265     308 ..      70     113 ..      66     117 .. 0.64
   2 !   17.5   0.0   8.5e-07   0.00032      63     177 ..     191     304 ..     151     312 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2.6
    TIGR03403 265 rklrdkledalle.lpdvlvvgdrehrvpntilisikgvegeaml 308
                   ++r+k++ +l + + d  v   +e r p t l   +g+e e +l
  MMETSP1174-20130828|17352_1  70 PAVREKIDGELNKaVEDFKVSFAKEVRSPCTRLP-AQGMEKEKLL 113
                  5567777776654256666667778888877764.4677777665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 8.5e-07
    TIGR03403  63 ivitscatesnnwvlkgvyfdeilk...keknhiittevehpavraacafleslgvevtylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtda 177
                    +t+  tes+   +k+ y+d  lk    +  +i+++   h a + a  +    g+ v ++p +++  ++  ++r a+  +t  +     +  tg + pi+++++l++ ++v +h d 
  MMETSP1174-20130828|17352_1 191 GAFTTGGTESILMAMKA-YRDWGLKvkgITEPNIVVCATAHAAFYKAGLY---FGIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDC 304
                  46889999999999986.88865441114567899999999999988776...59***********************999988777888999**********************997 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     1e-06   0.00038     111     174 ..     241     304 ..     172     354 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1e-06
    TIGR01977 111 gvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDa 174
                  g+ v+ v+a+ e ++d+ +++ a++++t +iv s     tG + pi+++a la+++++ + vD 
  MMETSP1174-20130828|17352_1 241 GIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDC 304
                  788999****************************************************999996 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.3e-06   0.00049      75     197 ..     183     305 ..     158     312 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.3e-06
    TIGR01979  75 inAksaeeivftkgateslNlvaaslgesslke....gdeivvseleHHanivpwqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDga 197
                   n +s+    ft g tes+ +  +++ +  lk     + +ivv ++ H a    + ++    g  +k ++ d+++++dl +l+  ++++t  +  ++   ++G v p++++++la+ +++ + vD +
  MMETSP1174-20130828|17352_1 183 YNGDSEACGAFTTGGTESILMAMKAYRDWGLKVkgitEPNIVVCATAHAA----FYKAGLYFGIFVKEVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSVDPIQQMAALARARNVGMHVDCC 305
                  4555566668*********9999999988887666768899999988865....77889999****************************99999999************************99998 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.1e-05     0.034     102     205 ..     194     300 ..     184     331 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.1e-05
    TIGR01265 102 tsGcsqaielviealanag........aniLvPrPgfplYetlakalglevrkydllpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklli 205
                  t+G++++i ++++a  + g         ni+v   +++ ++    + g+ v+  ++ ++++ ++dl +l+a +D +tva+v    +  +Gsv   d +++++++a+  ++ +
  MMETSP1174-20130828|17352_1 194 TTGGTESILMAMKAYRDWGlkvkgitePNIVVCATAHAAFYKAGLYFGIFVK--EVPADSEQRMDLGRLRAAMDSNTVAIVGSACQYATGSV---DPIQQMAALARARNVGM 300
                  5666666666666644333111111115777777777777777777777777..577999*********************99999999998...56666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.33u 0.31s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 1672.89
//
Query:       MMETSP1174-20130828|17356_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 588.87
//
Query:       MMETSP1174-20130828|17357_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.019   12.0   0.0    1.1  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-06     0.019     282     317 ..      59      97 ..      56     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.6e-06
    TIGR03025 282 laikldspgpvlFrqeRvGlngkpFkvy...KFRsMvvd 317
                  l + +++ g  +F  +R+G   ++Fkv+    FRsM+  
  MMETSP1174-20130828|17357_1  59 LHVEISDDGTYVFAGNRMGSASENFKVWdlkHFRSMTLT 97 
                  57999**********************97755****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 490.83
//
Query:       MMETSP1174-20130828|17360_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.18s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|17359_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|17362_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 255.73
//
Query:       MMETSP1174-20130828|17363_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|17361_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 976.11
//
Query:       MMETSP1174-20130828|17364_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|17367_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 274.40
//
Query:       MMETSP1174-20130828|17368_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 489.64
//
Query:       MMETSP1174-20130828|17371_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-59  199.2   0.1      2e-59  199.0   0.1    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    7.8e-49  163.9   2.0    9.6e-49  163.6   1.4    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.7e-18   63.6   0.1    3.3e-18   63.4   0.1    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    7.5e-17   58.8   0.0    9.4e-17   58.5   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.3e-13   48.3   0.0    1.5e-13   48.0   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.9e-13   47.4   0.1      2e-13   47.3   0.1    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.3e-12   43.2   0.0    3.9e-12   43.0   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.1e-09   34.9   0.0      2e-09   34.1   0.0    1.3  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.2e-09   32.8   5.4    1.8e-08   31.0   3.8    1.8  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.5e-07   28.3   0.0    1.9e-07   28.0   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    6.4e-05   19.9   0.7    0.00052   16.9   0.5    2.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    0.00092   15.6   1.4     0.0028   14.0   1.0    1.8  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
     0.0085   12.5   4.3      0.011   12.2   2.6    1.3  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
  ------ inclusion threshold ------
      0.022   11.2   0.1      0.025   11.0   0.1    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.1     7e-62     2e-59    1014    1324 ..      16     328 .]       5     328 .] 0.92

  Alignments for each domain:
  == domain 1    score: 199.0 bits;  conditional E-value: 7e-62
    TIGR00957 1014 lgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeyset..ekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgag 1324
                   l il  i  l+ ++      + as  lh +    vl sp+sff   p g+++nrf+ +l  vd+ la  +   ++  + +ig+v+v++     +  +++p  +l  +++++ + s r+lkrl+ +++spv++ f+ ++ g   iraf +qe+   q   ++++n ka++  ++ nrw+ + l+l+   +vl   +++v  r+sl++glvgl++ y l ++  +++++r s++ et + +verl  ys     ++    ++e  p   wp++grve+++ ++ryredl  vl+ ++ +   g k+g+vgrtg+g
  MMETSP1174-20130828|17371_1   16 LTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQYTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLVLAVGFLSVALRDSLDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLLHYSTRlpMEDQNEALQENVPTTDWPNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328 
                   5566555666666666677899********************************************988877777667789999999999999999999999999999999999*************************************************************************************************************************************753235567789****************************************************98 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   1.4   3.3e-51   9.6e-49     943    1257 ..      25     328 .]      10     328 .] 0.92

  Alignments for each domain:
  == domain 1    score: 163.6 bits;  conditional E-value: 3.3e-51
    TIGR01271  943 flrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatnde.gegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfi.dlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsg 1257
                   + + l +  + l  s  lh+     vl +p++ +     grilnrf+ d++ +d+ l l+lfd  q+ ++ +g+++vv  +  yi+    p   ++  lr y  r+ ++lk+l+  ++sp+ + +  s+ gl  +rafgrq      f   l+     w+ +l   rwf l +d++  ++  av f+++a +d+ ++g vg+ l   + + + +q+ +  s + ++ m sv+r++++   lp e+++      +       + en   +  wp++g+++++dl ++y e+   vl+ +s    ag ++g++grtgsg
  MMETSP1174-20130828|17371_1   25 LTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQYTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLVLAVGFLSVALRDSlDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLLHYStRLPMEDQNE-----A-------LQENV-PTTDWPNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328 
                   45556666777889999*************************************************************99999*99999999999999*******************************************************************************************99876379***************************************962688883222.....2.......23444.4556*********************************************8 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   1.1e-20   3.3e-18     181     491 ..      12     328 .]       4     328 .] 0.73

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1.1e-20
    TIGR03797 181 allaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerklle.legklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll.....aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgk..LsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsG 491
                  ++l++++ +l+f+l+q l  +R   ++++ l+ a   r+L+ p sfF +   g +++r ++ +sq+ ++l+ a+  ++  s++a+ ++v+++++ + +  + +  a++ ++ +   +++ +r  ++l   +++ +++     i g+  +r  g +e++  ++ ++  ++ k    +  ++ +   + + l  + ++++  l ++l      +  +l l   la +  f  +++   + aet +  ++ + +y+   P+ + ++E+ +e+v   +   +G++e++ ++ rY++d p+vL+ vs +  +G  +++vG  GsG
  MMETSP1174-20130828|17371_1  12 IFLLLTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSdLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFM-LPPAFFLMGYLRQYTTRSMRELKRLDGiTKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLVLAVGFLSVALRdsldpGLVGLALVYVLALSGLFQYMMRQSAQ-AETYMTSVERLLHYSTRLPMED-QNEALQENVPTTDwpNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  4566778899************************************************76549*************************9999998876443.333444444444444444444444433134456777778899***********************9999998888888877776666655555555444444333333334444444444444444444444333.3444555555677888889755.45555555444431258*****************************************9 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   3.2e-19   9.4e-17      63     371 ..      15     328 .]       6     328 .] 0.77

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 3.2e-19
    TIGR02203  63 glvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqlias.valav.vllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfal......lDsppekdeGtraler.vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsG 371
                  +l +l  i s + ++l+ +++ +  + l  +  +++l+ p ++f  ++ g++l+r+t+d  qv ++++ +l    + +++ ig ++v++++ W + +++   + ++++l +++++ +r++++    + + + +  + ++ g   ++ fg qe+ +  f +  +++++        +     +++l+ s + lav  l +al ++ +    vG   +++ a+  l++ +      sa+  + +++ e++++        D+++  +e   +++   +G+ve++++ +ry++d  ++l+++s +  aG  + +vGr GsG
  MMETSP1174-20130828|17371_1  15 LLTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQYTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSfLVLAVgFLSVALRDSLD-PGLVGLALVYVLALSGLFQYMM---RQSAQAETYMTSVERLLHYstrlpmEDQNEALQENVPTTDWpNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  5566666777777888888888888888889999************************************************************9999999999***********************************************9998888655555555555555555555556665554155555224444444444.3457777778888777776543...33445555566666665541111104544444444444444579*****************************************9 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   5.2e-16   1.5e-13      81     373 ..      35     328 .]      17     328 .] 0.87

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 5.2e-16
    TIGR02868  81 alrslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas....ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaG 373
                  +lr+ + l  +  +r+ ++ l++ a+   G +L+r+++D  ++++ l  +++      ++a+ +v+++ ++++ +  +l  a  +++ +    + r++r+ ++     +s ++ +  + + g+  ++++G++e+v  q  ++ ++ ++a      ++++   +  l++   vl++  + v   + ++l+p ++ +     La+   ++ +    +q +++ ++ eR+        + ++++++ +e++++    ++ ++el+dl ++y ++ + vl+gvs++ ++G+++ vvG++G+G
  MMETSP1174-20130828|17371_1  35 TLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQ-YTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLVLAVGFLSV--ALRDSLDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLLHYSTRL-PMEDQNEALQENVPTtdwpNQGRVELQDLCIRYREDLPqVLHGVSAEFPAGAKIGVVGRTGSG 328
                  56666666666667777788888888889********************************************999998888888887764.5678889999999999**********************************99999999999999999999999999999999999999..5899********9999*****************************9877666.33333333333333335778999**********999888***********************9 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1     7e-16     2e-13     203     519 ..      12     328 .]       1     328 [] 0.82

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 7e-16
    TIGR00958 203 aiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevq..eavakan..qvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlv.legkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtla...pk...nleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsG 519
                    +llt+l+l  sl+++l    f  a+ r ++ ++    + +l   + Ff +n+ G +  R +sD s+v e l+l + +  +  ++++g++++ +++ +++ +     lP+ +++   + ++     +e++  + ++k+         ++gl  +r F+  e+   +f ++le+  + ++   +   l+ w   +l+ll   lvLa+G   v l++ ++ g     l+Y l l+   ++++    +      + e++ +y  R P  +++  l+   p+     +G+ve qd    Y +    +vl++ +    +G  + +VG  GsG
  MMETSP1174-20130828|17371_1  12 IFLLLTILTLIFSLTQTL---LFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVF----MLPPAFFLMGYLRQYTTRSMRELKrlDGITKSPvhTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLI---LNRWFGLMLDLLCSFLVLAVGFLSVaLRDSLDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLLHYSTRLPMEDQNEALQenvPTtdwPNQGRVELQDLCIRYRE-DLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  445566666666666665...5777888999999*****************************************************************9754....5788888887777777777777664467877741133457899************************9999997655...5678888899999999*****88773677777776667799*************************************87666554411122122579************54.4568***********************9 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.3e-14   3.9e-12     197     517 ..       9     328 .]       2     328 .] 0.76

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.3e-14
    TIGR03796 197 llgll.ltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalq.lvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrv.legeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseek..ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsG 517
                  l+g++ l ++l+ +++l q+ l  r + + +        +++l  P +ffa    g i +R +++  +v e l+  l  t    ++++  ++v+++  + + ++    a+  + +l+ +++r+  +++r    +++ +++   a++  +  ++A g ++++  ++     k ++a     + + +++++   l  l s l+l+vg+l v l+ +l  G +      + +++   + ++ + ++ ++  + +erl    ++++   +e+++e+ +e+ ++     +G+vel+++   y +  +++++++s +   G+++ +vG  GsG
  MMETSP1174-20130828|17371_1   9 LWGIFlLLTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDlSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFML-PPAFFLMGYLRqYTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLM---LDLLCSFLVLAVGFLSVaLRDSLDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLL---HYSTRLPMEDQNEALQENVPTtdWPNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  555541556788889999999999*************************************98864799999999999887766677666666666555555544.4444445555404455544444444456777888888889999999**************************99999999987...55667889******9985688999997766666667777777778877777777777777764...44444444442222222222223889******************************************9 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   6.7e-12     2e-09     279     505 ..      90     328 .]      75     328 .] 0.67

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 6.7e-12
    TIGR03375 279 llvialiggplvlvplv.avplvllvglllqkplsklaeeslresaqknal........lveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltn.laalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmk....lpvereee....krllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsG 505
                   + ++ ig+ +v+v ++  ++++l ++++l   l++ +++s+re +   ++           s+ gl  i+a + +++++ ++ +    l k+ +k+  +  +l + +  ++  l+s +v+ vG   +a  +    gL+   ++   al+ l q   ++ +  qa+t ++s+++l++    lp e ++e    +   +    +G++el+++  +Y+e+  ++L+ vs +  +G k++++Gr+GsG
  MMETSP1174-20130828|17371_1  90 QISMMAIGSVVVVVWVMwYIVFMLPPAFFLMGYLRQYTTRSMRELKRLDGItkspvhtnFSASIGGLVPIRAFGRQEQVHLQFLN---RLEKN-VKAWWWWLILNRwFGLMLDLLCSFLVLAVGFLSVALRDSLDPGLVGLALVYVLALSGLFQ--YMMRQSAQAETYMTSVERLLHystrLPMEDQNEalqeNVPTTDWPNQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  4456667777666655414555666777788888888888877765544331111111145566666666666666655555444...33333.3333344444440555666788999999****998777777889**99999888888877..589999************97522223444444311003334444579*****************************************9 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   3.8   6.1e-11   1.8e-08     185     495 ..      13     328 .]       9     328 .] 0.76

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6.1e-11
    TIGR01846 185 llavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarv.releqirefltgsal....tvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvG....qlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdi.ldsPteassagk.aalpel....kGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsG 495
                  +l ++++ +++sl +t lf ++t r    l       +l+ Pls+f     G ++ r   +l q+ e l+ + +    ++++ +  vvv + vm++   +l     + l+ yl  +++ s +  kr++    k +  ++ +  s+ g+  i+a   ++q++ ++ + l + v+a +    l  + +  ++l+    ++++ ++ +   l  +l +G    +lv +  l+g   q ++r +           ++erl       P+e +++++   +p+     +G++e++++  ry+ed p+vl+ +s + +aG  iG+vG++GsG
  MMETSP1174-20130828|17371_1  13 FLLLTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFtSDLSQVDEQLALALFdtfqISMMAIGSVVVVVWVMWYIVFMLPPA--FFLMGYLRQYTTRSMRELKRLDGI-TK-SPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLVLAVGFLSVA--LRDSLDPGlvglALVYVLALSGL-FQYMMRQSA---QAETYMTSVERLLHYsTRLPMEDQNEALqENVPTTdwpnQGRVELQDLCIRYREDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  6789999**************************************************73589999988765432211155667777888888999988887654..446677777777777777888764.44.444555688*******************************************99999887777777776654..56677766211144444445543.344444322...2344567888886651456888877444144554322228*****************************************9 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.4e-10   1.9e-07      58     378 ..      10     328 .]       2     328 .] 0.76

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 6.4e-10
    TIGR02204  58 neafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardv.lagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpk.......alpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaG 378
                    +f+ll +++l+ +l+ +l f+  +    r ++ l  a  +++l+   +ff+ n  g +l r+t+d +++ + +  +l   ++  +++iG+++++v +   +  ++  a  l+      ++r++r+l r    + + + ++ + ++  +  ++a++++e+ + +f +++ek ++a    +    ++    ++l + +  lvl vG   v l ++l +G ++  ++y +  +g +  +    ++ +    ++erl       + +    q++       +   + +g++e++++  +y +    ++l+g++ +  +G ++ +vG +G+G
  MMETSP1174-20130828|17371_1  10 WGIFLLLTILTLIFSLTQTLLFFRATL---RASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQYTTRSMRELKRLDGITKSPVHTNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFG---LMLDLLCSFLVLAVGFLSVaLRDSLDPGLVGLALVYVLALSGLFQYMMRQSAQAETYMTSVERLLHYS---TRLPMEDQNEalqenvpTTDWPNQGRVELQDLCIRYREDL-PQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  567888899999999988888887665...777788889999*****************************9999888888888899999999888777555443333333333333345678899998888888888999999*******************************9988776666654...33444444577888877664789********9999998888888777777777667777777776543...333333222200000013345789************9988.689*******************9988 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   1.8e-06   0.00052      59     360 ..      22     328 .]       3     328 .] 0.55

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.8e-06
    TIGR02857  59 llawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaq..aaarkqlaalsrLsg.....hfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkldlaegLlvLlLaPevylPlRql.gaqyHakaegvaaaealvevld.aeeqpeaekapltaaass........slelenvsvay.egrkpalkevsltvepgelvalvGaSGaG 360
                  ++++ +  +  ra+++++s l ++  ++v++   +  + ++ g++    +  ++++d+ +a  l   ++  ++ +  +++v++  w     ++    ++p    L+G+  q   ++ ++l+ l+ + +     +f   + gl  +++fgr+++   +  +  e+  ++    L +    +l+L+ll +  v      +G+  +a +  l  gL+ L L+    l l  l       +a++++ + ++ ++l  ++  p+++++++ +++          ++el+++ ++y e+  ++l++vs+++++g ++++vG  G+G
  MMETSP1174-20130828|17371_1  22 IFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWY----IVF---MLPPAFFLMGYLRQytTRSMRELKRLDGITKspvhtNFSASIGGLVPIRAFGRQEQVHLQFLNRLEKNVKAWWWWLILNRWFGLMLDLLCSFLV----LAVGFLSVALRDSLDPGLVGLALVY--VLALSGLfQYMMRQSAQAETYMTSVERLLHySTRLPMEDQNEALQENVPttdwpnqgRVELQDLCIRYrEDLPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  555556666666666666666666666666655555566666666666666666666666666555555555555555555554443....112...2232333334333200222233333332221222225666666666666666666655555554555555555555555555666666665433....2224444444444444444444431..122222201112345667777777777777766777777777776666667778999***********55555************************9 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.0   9.5e-06    0.0028     236     314 ..      47     123 ..      11     328 .] 0.57

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.5e-06
    TIGR01193 236 ikhlfelPmsffstrrvGeivsrft.daskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiil 314
                     ++  P+sff++   G i+ rft d s++ + la +++  f  +s++ i ++v+v+  +  + ++++  P++ ++ +l
  MMETSP1174-20130828|17371_1  47 CSRVLSSPLSFFAANPLGRILNRFTsDLSQVDEQLALALFDTF-QISMMAIGSVVVVVWVM--WYIVFMLPPAFFLMGYL 123
                  5679999*****************7488888888887777776.57777666666655443..33444445666655544 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.6   3.6e-05     0.011      58     172 ..      13     129 ..       3     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-05
    TIGR01194  58 fvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtl.li.lttllvelavtlfglaylaylsv.vvflltvvlivlGvaayllar 172
                  f  l++l+l+++ +  l    ++ r  + l  + + +vls+pl         r+l  +tsd+ ++++ l l+ + t+ + + + ++++  + ++ + +vf+l  + +++G   ++  r
  MMETSP1174-20130828|17371_1  13 FLLLTILTLIFSLTQTLLFFRATLRASSFLHDAACSRVLSSPLSFFAANPLGRILNRFTSDLSQVDEQLaLAlFDTFQI-SMMAIGSVVVVVWVMWyIVFMLPPAFFLMGYLRQYTTR 129
                  67799************************************************************98641331444444.34445555555554442466777777788877777665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.5e-05     0.025      96     373 ..      47     328 .]      10     328 .] 0.60

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.5e-05
    TIGR01192  96 fgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrtkegq..aaveeyy.hsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldww...alasglnriastislviilvigtvlvk.kge.......lsvgeviafigfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkgavefrdisfefans.sqgvrdvsfeakagqtvaivgptgag 373
                   +r++s pls+       +    l r +  l+ +  ++    + tf   ++ i   + + + +  ++ +l  +++l++ l    t+  +    +++     v +  s si  +  ++++ r e+      +f ++l      v  ww    l   +  +   +   ++l +g + v  +         l++  v+a+ g+ + ++ +  q ++++t  ve   +    + +ed  +  +e    ++ +n +g ve++d+   + +   q ++ vs e  ag  + +vg tg+g
  MMETSP1174-20130828|17371_1  47 CSRVLSSPLSFFAANPLGR---ILNRFTSDLSQVDEQLALALFDTFQISMMAIGSVVVVVWVMWYIVFMLPPAFFLMGYLRQYTTRSMRelKRLDGITkSPVHTNFSASIGGLVPIRAFGRQEQVH---LQFLNRLEK---NVKAWWwwlILNRWFGLMLDLLCSFLVLAVGFLSVAlRDSldpglvgLALVYVLALSGLFQYMMRQSAQAETYMTS-VERLLHYSTRLPMEDQNEALQENVPTTDWPN-QGRVELQDLCIRYREDlPQVLHGVSAEFPAGAKIGVVGRTGSG 328
                  5566666666654433332...23355555555555555555556655566666666666666555555665555555444333332220023333320335555566666666666666644322...244444432...2333320012222233344444444556666555432333111111133445777888888888888888888876.567778888899*******9**999999998.8**********99865279999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.19s 00:00:00.85 Elapsed: 00:00:00.87
# Mc/sec: 497.61
//
Query:       MMETSP1174-20130828|17369_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1624.72
//
Query:       MMETSP1174-20130828|17373_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 668.46
//
Query:       MMETSP1174-20130828|17374_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1203.43
//
Query:       MMETSP1174-20130828|17375_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 701.80
//
Query:       MMETSP1174-20130828|17376_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.0   0.0      0.057   10.1   0.0    1.4  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA


Domain annotation for each model (and alignments):
>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.4e-05     0.057     106     137 ..      14      45 ..       6      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.4e-05
    TIGR03812 106 ekpeiivPesahfsfekaaellglelvkaeld 137
                    pe+ +P+s  f++ k  + lg+el +++l 
  MMETSP1174-20130828|17376_1  14 IDPEVTLPKSQWFTYAKSLDALGVELKTSPLR 45 
                  579************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 797.43
//
Query:       MMETSP1174-20130828|17383_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 243.14
//
Query:       MMETSP1174-20130828|17381_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   55.2   0.0    1.7e-15   54.7   0.0    1.2  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    8.7e-09   33.3   0.0    0.00023   18.9   0.0    2.2  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
    2.4e-07   27.9   0.0      4e-07   27.1   0.0    1.4  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    6.2e-07   27.2   0.1    8.2e-07   26.8   0.1    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    2.3e-05   20.4   0.0    2.4e-05   20.4   0.0    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase
    4.1e-05   21.0   0.0      6e-05   20.5   0.0    1.3  1  TIGR01382 PfpI: intracellular protease, PfpI family
    5.6e-05   20.4   0.0    8.1e-05   19.9   0.0    1.2  1  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
    0.00042   18.1   0.0    0.00085   17.1   0.0    1.4  1  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
     0.0026   14.2   0.0      0.011   12.2   0.0    1.7  2  TIGR00337 PyrG: CTP synthase
     0.0044   13.7   0.0     0.0058   13.3   0.0    1.1  1  TIGR00313 cobQ: cobyric acid synthase CobQ
     0.0045   13.1   0.0     0.0045   13.1   0.0    1.1  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   4.6e-18   1.7e-15       8     181 ..      19     215 ..      10     218 .. 0.69

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 4.6e-18
    TIGR00888   8 sqYaqliaRrlrelgvysel....vpatt....tleeikevepkgiilsGgPesvkae.....naekvdekifelgvPvlGiCyGmqllakalGgeveraekrey....gkaelevldedelfkglek.elkvWmshgDkvkelPegfkvlaksencpvaalkkeekk......lyGvqfhPevthtekGkellenfv 181
                  + Y++ ++  lrel v + +     +++     +l  +   +  g+i+ G+    +++     + +++ ++++   vP+lGiC+G+q++a+alGg  +   ++e+    g    + + + + + +l++ ++ +   h+D vk++Pe+   l++s++ p+ a++ +e +      +  +q hPe   t++Gk++l++ +
  MMETSP1174-20130828|17381_1  19 TSYSRSVMQMLRELFVAAGVsvdlSEVNIredgNLASLDFSNYDGVIIPGSKYAAYDDfawvtELKSIIRTLHATRVPMLGICFGHQIIAEALGGDGSVVLNSEHgcqaGACFFRATTNGKTLLELPDcDVALLYHHNDVVKRIPEDAVCLGRSAENPYHAVAYNECHtsgrpsIITFQAHPEFS-TTTGKKVLKQII 215
                  56888888888887555443111133332001144455667779*******9999887222224456667778889******************975554444441111455678888888888888757888999************************998776541111126679*****86.6789***99865 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   6.1e-07   0.00023      30      86 ..      54     109 ..      35     119 .. 0.74
   2 !   12.5   0.0   5.5e-05     0.021     172     196 ..     191     215 ..     146     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.1e-07
    TIGR01855  30 dskelekadklvlPGVGafkeamkklrele.lellaekvvkkkkpvlgiClGmQllfe 86 
                   s + +++d +++PG     +a++       l+ +++++ +++ p+lgiC G Q+++e
  MMETSP1174-20130828|17381_1  54 ASLDFSNYDGVIIPGS--KYAAYDDFAWVTeLKSIIRTLHATRVPMLGICFGHQIIAE 109
                  55677899******85..33444444333336678899*****************987 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.5e-05
    TIGR01855 172 dnivgvQFHPEkSgktGlkllknfl 196
                    i+++Q HPE S +tG+k+lk+++
  MMETSP1174-20130828|17381_1 191 PSIITFQAHPEFSTTTGKKVLKQII 215
                  5799******************975 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09     4e-07     232     266 ..      80     114 ..      33     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.1e-09
    TIGR01368 232 veeaietvkklleakiPifGIclGhqllalalgak 266
                  v+e  + +++l  +++P++GIc+Ghq++a alg++
  MMETSP1174-20130828|17381_1  80 VTELKSIIRTLHATRVPMLGICFGHQIIAEALGGD 114
                  56667788999999*******************87 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   2.2e-09   8.2e-07      65     136 ..      84     158 ..      17     217 .. 0.65

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 2.2e-09
    TIGR00566  65 leliehl.aGklPilGvClGhqalaqafGadvvraekvkhG.kvseiehngaavfaglfn.Pdalkatryhslvv 136
                   ++i+ l a ++P+lG+C+Ghq +a a G+d + + +  hG +  +  +  ++  + l + Pd+ +a  yh   v
  MMETSP1174-20130828|17381_1  84 KSIIRTLhATRVPMLGICFGHQIIAEALGGDGSVVLNSEHGcQAGACFFRATTNGKTLLElPDCDVALLYHHNDV 158
                  5677764388*********************99999999993444555566666666666677777777776555 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.4e-08   2.4e-05     576     673 ..      82     181 ..      20     218 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.4e-08
    TIGR01815 576 dvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasr...irvlepdvlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaie 673
                  ++k+ i +  a  +p++G+c+G q ++ea GG+ +v+    hG  +     r ++ +  + +lp+      yh      +r+p++ +    s+++   a+ 
  MMETSP1174-20130828|17381_1  82 ELKSIIRTLHATRVPMLGICFGHQIIAEALGGDGSVVLNSEHGCQAGacfFRATTNGKTLLELPDCDVALLYHHN-DVVKRIPEDAVCLGRSAENPYHAVA 181
                  457778889999************************99999*975431114555666777778876555555543.3456777777777777766665554 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.6e-07     6e-05      44     110 ..      42     110 ..      22     132 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.6e-07
    TIGR01382  44 kkgakvtvdatlddvdaeeydalvipGGra..peylrldekvielvrefaekgKpvaaIChgpqlLisA 110
                    + ++  d  l  +d ++yd+++ipG +    +     +++++++r +     p+  IC g q++++A
  MMETSP1174-20130828|17381_1  42 LSEVNIREDGNLASLDFSNYDGVIIPGSKYaaYDDFAWVTELKSIIRTLHATRVPMLGICFGHQIIAEA 110
                  5677788899999**************9853467788899**************************998 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.2e-07   8.1e-05      36     111 ..      56     127 ..      24     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.2e-07
    TIGR01737  36 keledydavvlpGGFsyGDylRagaiaaaspvlkevkelaekGkpvlGiCnGfqilveagllpGallknaslrFis 111
                   ++++yd+v++pG      y      a ++++ + ++ l ++ +p+lGiC G qi++ea   +G+++ n+++  ++
  MMETSP1174-20130828|17381_1  56 LDFSNYDGVIIPGS----KYAAYDDFAWVTELKSIIRTLHATRVPMLGICFGHQIIAEALGGDGSVVLNSEHGCQA 127
                  35677*******96....34455677888999999999999******************99999999999877665 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.3e-06   0.00085      33      88 ..      57     112 ..      34     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.3e-06
    TIGR03800  33 dldeidglilPGGesttlskllektglleplreliksglPvfGtcaGlillakeii 88 
                  d+ + dg+i+PG   ++   ++  t+l+  +r+l  + +P++G c G  ++a+ + 
  MMETSP1174-20130828|17381_1  57 DFSNYDGVIIPGSKYAAYDDFAWVTELKSIIRTLHATRVPMLGICFGHQIIAEALG 112
                  67779********************************************9999864 PP

>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.9e-05     0.011     307     386 ..      23     107 ..      15     111 .. 0.73
   2 ?   -0.7   0.0      0.24        91     497     513 ..     190     206 ..     169     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.9e-05
    TIGR00337 307 lsvkealkhaalkldlkvnikwidsedleeeeaelleevdgilvPGG....fGerGveGkil.aikyarenkiPflGiclGlqva 386
                   sv++ l+   +++ ++v+++ ++  +  + ++ + ++ dg+++PG     + +      ++  i+  +  ++P+lGic+G q+ 
  MMETSP1174-20130828|17381_1  23 RSVMQMLRELFVAAGVSVDLSEVNIREDGNLASLDFSNYDGVIIPGSkyaaYDDFAWVTELKsIIRTLHATRVPMLGICFGHQII 107
                  47888888888888888888888887777677778899*******973222333333344441467778899***********85 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.24
    TIGR00337 497 hpffvatqfhPefksrv 513
                  +p  ++ q hPef ++ 
  MMETSP1174-20130828|17381_1 190 RPSIITFQAHPEFSTTT 206
                  5678999******9875 PP

>> TIGR00313  cobQ: cobyric acid synthase CobQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.6e-05    0.0058     281     340 ..      57     115 ..      45     140 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
    TIGR00313 281 slddldvviiPGskdtiadlkalkesklaeeildlak.eigiviGicGGyqvlgkelvdke 340
                  ++++ d viiPGsk +  d  a    +l+  i+ l    ++ ++Gic G+q++++ l  ++
  MMETSP1174-20130828|17381_1  57 DFSNYDGVIIPGSKYAAYDDFAWV-TELKSIIRTLHAtRVP-MLGICFGHQIIAEALGGDG 115
                  5678999*******9988876654.4677777766540455.9**********99886554 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.2e-05    0.0045      16     117 ..      20     125 ..       7     254 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
    TIGR01823  16 sftynvvallekaldvr.vsvitvhsDkld.ddlle.llqlfdaivvGPGPGdPnv..akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGq 117
                  s++  v+++l +      vsv   + +  + ++l   ++ ++d +++ PG           v+ l+ + +   +  vP+lGiC+G q ++ a G d + +    hG 
  MMETSP1174-20130828|17381_1  20 SYSRSVMQMLRELFVAAgVSVDLSEVNIREdGNLASlDFSNYDGVII-PGSKYAAYddFAWVTELKSIIRTLHATRVPMLGICFGHQIIAEALGGDGSVVLNSEHGC 125
                  67777788877754332355554444444435665425677888776.4443332111223455566666666888**************99999888777777773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 795.00
//
Query:       MMETSP1174-20130828|17382_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|17380_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|17385_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|17389_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|17386_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-107  356.8  22.8    6.5e-57  190.8   3.3    2.0  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    2.3e-81  271.1   0.0    3.9e-81  270.4   0.0    1.3  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    1.4e-26   90.4  22.0    2.7e-16   56.4   3.8    3.1  2  TIGR00845 caca: sodium/calcium exchanger 1
    6.3e-08   29.6  14.6    5.1e-07   26.6   0.5    2.6  3  TIGR00846 caca2: calcium/proton exchanger
    1.6e-06   25.4   9.9    5.9e-06   23.5   0.1    2.7  2  TIGR00378 cax: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   3.3   7.9e-60   6.5e-57     454     616 ..      76     240 ..      73     245 .. 0.96
   2 !  171.8   7.0   4.4e-54   3.6e-51    1025    1195 ..     473     648 ..     454     659 .. 0.89

  Alignments for each domain:
  == domain 1    score: 190.8 bits;  conditional E-value: 7.9e-60
    TIGR00927 454 qGwvvlhifGmlyvfvalaivcdeyfvpalGvitdklqisedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalfs...reilnltwwplfrdvsfyildlimlilffldsliawweslllllayalyvftmkwnkqlelwvkeql 616
                  +G++++  f + y fv +ai+cd+ fvpal +i++kl+is+dvaGat+maaGGsapel ts+iG f   s++G GtivGsavfn+lfviG+c lf+   +  l ltwwpl rd ++yi+ l  l  f+ d  i  we+l+ +  y  yv+ mk+  +le  vk++l
  MMETSP1174-20130828|17386_1  76 KGFLIFQFFLLFYTFVGIAIICDDLFVPALEMIAEKLEISNDVAGATLMAAGGSAPELATSFIGTF-QQSDIGFGTIVGSAVFNVLFVIGACVLFTppdKAPLTLTWWPLARDCTYYIITLATLAAFMQDQKIQLWEALIQFALYFGYVLLMKFSSRLEAGVKRRL 240
                  699999***********************************************************9.58**************************7444789*************************************************************998 PP

  == domain 2    score: 171.8 bits;  conditional E-value: 4.4e-54
    TIGR00927 1025 lpivfplwltvpdvrrlearkffvitflGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqp.....vpvssnG.lfcaivllflmllfvissialckwrmnkilGftmfllyfvfliis 1195
                   +p+++ l+  vpd r      +   tf+Gsil i +++y+mv  a ++G t+ i + +mG+t+laaGts+pdl++svivar+G Gdmavsss+Gsnifd+tvGlplpwl f ++ gl         vss+G lf  + +l+ m+++vi si++  ++m k lGf+mfl+yfv++   
  MMETSP1174-20130828|17386_1  473 IPLIL-LFSLVPDCRLPGNEYLKYCTFFGSILTIGLLAYVMVDAATRIGATLNIPDVVMGITVLAAGTSVPDLLSSVIVARQGEGDMAVSSSIGSNIFDVTVGLPLPWLTFNIVSGLVGcnrdyFRVSSDGnLFEYLSVLLGMVVLVIVSISAFSFKMSKGLGFAMFLFYFVYVAYV 648 
                   45444.56679***99888888899*******************************************************************************************9751222257***99799999999********************************98654 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.4   0.0   4.8e-84   3.9e-81       4     312 .]      83     644 ..      79     644 .. 0.79

  Alignments for each domain:
  == domain 1    score: 270.4 bits;  conditional E-value: 4.8e-84
    TIGR00367   4 vigllilglilvivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcalls...reilvltkl.lkrdvsfllvvlillliflldgv...lesllllvllflyvvylkflvkver..kqaindtlteeqvdenerq....................................................................................................................................................................................................................rkqitfllvllivg............................ltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallat.......irvkpvavslda......lvlv.ivllllllivvilsialkrwlglillalYiay 312
                   + l++ ++ ++i++++l+v++l+ iaekl+is++v+G+T++aag+S+PEl ts i++++ +sdig gt+vGS++fN+l+v+g c l++   ++ l+lt++ l rd++ ++++l  l+ f+ d++   +e l  + l+f yv+ +kf  + e   k+    +l +e+ +e+e++                                                                                                                                                                                                                              ++                              +  + + ++++Vd a++i+ tl+i++ ++G+t+lAaGTS+p+L+ svi+ar+g+gd+av+s++GsNifd++vgl+lp+l  +        + +   vs+d+      +vl+ +v l+++ i  + s ++ ++lg+ ++++Y++y
  MMETSP1174-20130828|17386_1  83 FFLLFYTFVGIAIICDDLFVPALEMIAEKLEISNDVAGATLMAAGGSAPELATSFIGTFQ-QSDIGFGTIVGSAVFNVLFVIGACVLFTppdKAPLTLTWWpLARDCTYYIITLATLAAFMQDQKiqlWEALIQFALYFGYVLLMKFSSRLEAgvKRRLGIKLLDEYEEEKENPnfefenpncfhlgvlsvlsnlnniadtaavacvtrikgnaravfreidthghgkigtedmralldnlgkvnkpledshvkivcnqidpnskdyiseksfvdwylrsqkgiqervrevfdkldknksgtiscktvklvlsdlgsnpspeeiaiaiksigddseeisfadfnkwycdtlfwtdvedeeatsmwntaiekigelcssevdlktkiV--------NVVCIplillfslvpdcrlpgneylkyctffgsILTIGLLAYVMVDAATRIGATLNIPDVVMGITVLAAGTSVPDLLSSVIVARQGEGDMAVSSSIGSNIFDVTVGLPLPWLTFNivsglvgCNRDYFRVSSDGnlfeylSVLLgMVVLVIVSISAF-SFKMSKGLGFAMFLFYFVY 644
                  4567899***************************************************96.79*************************83333467899999**********************999************************99876666655555555555554556666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888888888888888888888888888888888887666543331........22222344456778899999999999999999999*****************************************************************************887666665523334445555511111234441344444444444.999**************98 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   5.9   5.7e-13   4.7e-10      79     242 ..      83     223 ..      74     232 .. 0.74
   2 !   56.4   3.8   3.3e-19   2.7e-16     725     870 ..     467     622 ..     455     639 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 5.7e-13
    TIGR00845  79 fvalvylflGvsiiad.rfmasievitskekeivvkkpngettvvtvriwnetvsnltlmalGssaPeillsvievvgknfeaGdlGPstivGsaafnlfiiiaicvvviPdGevrkikhlrvffvtaawsvfayvwlylilavfspGvvevweglltl.lffPlt 242
                  f +l+y f+G++ii d  f+ ++e+i+                  ++ i n+ v+  tlma G saPe+  s i      f+  d+G +tivGsa fn++ +i+ cv++ P         l  ++  a    +  + l  + a++    +++we+l+ + l+f  +
  MMETSP1174-20130828|17386_1  83 FFLLFYTFVGIAIICDdLFVPALEMIA-----------------EKLEISND-VAGATLMAAGGSAPELATSFIG----TFQQSDIGFGTIVGSAVFNVLFVIGACVLFTPPDKAPLT--LT-WWPLARDCTYYIITLATLAAFMQDQKIQLWEALIQFaLYFGYV 223
                  677788888888877514666777664.................34566666.8999***************996....6999***************************98765432..33.233344444444566777788889999****999983455444 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 3.3e-19
    TIGR00845 725 vmhfltvfwkvlfafvP....PtdylgGwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiyhaaqG...ekfkvep.Gtla..fsvtlft.vfaliai 870
                  ++ +++++  +lf++vP    P + +  + +f  sil iGll+ ++ d+a++ G t+++ d v  ++ +a GtsvPd ++s + a q +  d ++    Gsn  +v +G+ + w    i     G     f+v++ G+l   +sv+l   v  +++i
  MMETSP1174-20130828|17386_1 467 IVNVVCIPLILLFSLVPdcrlPGNEYLKYCTFFGSILTIGLLAYVMVDAATRIGATLNIPDVVMGITVLAAGTSVPDLLSSVIVARQGE-GDMAVSSSIGSNIFDVTVGLPLPWLTFNIVSGLVGcnrDYFRVSSdGNLFeyLSVLLGMvVLVIVSI 622
                  67899***********966666677788*********************************************************9987.69**********************8777765544411156888653666322455553303333444 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.5   6.3e-10   5.1e-07     229     370 ..      82     225 ..      74     227 .. 0.88
   2 !   12.6   0.7   1.2e-05    0.0095     233     311 ..     498     576 ..     490     591 .. 0.90
   3 ?   -2.4   0.5      0.41   3.3e+02      23      49 ..     618     644 ..     603     655 .. 0.45

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 6.3e-10
    TIGR00846 229 aailLvvativval.laellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLnleal..elvalvlsvlltaitlqdGrsnyleGavlLalyviiala 370
                  ++ lL+ + + +a+ + +l v +le ++e+l +s+ + g +l++  g a+E +t+ i  ++ + di  g ++GSa+   l+v+  +vl +     +l+L+  +l  +    ++++   a+ +qd + +  e ++ +aly+ ++l+
  MMETSP1174-20130828|17386_1  82 QFFLLFYTFVGIAIiCDDLFVPALEMIAEKLEISNDVAGATLMAAGGSAPELATSFIGTFQ-QSDIGFGTIVGSAVFNVLFVIGACVLFTPPDKAPLTLTWWPLarDCTYYIITLATLAAFMQDQKIQLWEALIQFALYFGYVLL 225
                  56778888887765156799**************************************997.67************************999999999999976522677889999999999******************998876 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.2e-05
    TIGR00846 233 LvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvp 311
                   ++ ++ + lla ++v++   + ++l+++  ++g+++++     ++ +++viva +   d+a+   +GS +   ++  p
  MMETSP1174-20130828|17386_1 498 FFGSILTIGLLAYVMVDAATRIGATLNIPDVVMGITVLAAGTSVPDLLSSVIVARQGEGDMAVSSSIGSNIFDVTVGLP 576
                  57788999*************************************************************9876666555 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.41
    TIGR00846  23 vplaiilalvgvsqtlvfllallgiip 49 
                  v+++i ++++++s+ l f++ l+  + 
  MMETSP1174-20130828|17386_1 618 VIVSISAFSFKMSKGLGFAMFLFYFVY 644
                  333333444444444433333333333 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   7.1e-09   5.9e-06     206     341 ..      82     219 ..      41     228 .. 0.78
   2 ?    3.0   3.8     0.012        10     208     280 ..     496     568 ..     484     647 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 7.1e-09
    TIGR00378 206 atvvllavtvvvavis.ellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGsslqialfvaPvlvivgilidvpmdlnfslfel..vallvavllvnaissdGesnwleGvlllaay 341
                  +  +l+ + v++a+i+ +l+v +le ++e+l +s+   G  +++  G a e at+ + +++ + d+ ++ +vGs++   lfv    v+ +   + p++l++ +        ++++    a ++d +    e ++ +a y
  MMETSP1174-20130828|17386_1  82 QFFLLFYTFVGIAIICdDLFVPALEMIAEKLEISNDVAGATLMAAGGSAPELATSFIGTFQ-QSDIGFGTIVGSAVFNVLFVIGACVLFTPPDKAPLTLTWWPLARdcTYYIITLATLAAFMQDQKIQLWEALIQFALY 219
                  45678999999*986616779***********************************99997.57*******************99999998888888888765433102233334444556666666666666666665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.012
    TIGR00378 208 vvllavtvvvavisellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGssl 280
                    ++++ +++ + + ++v++   +   l + ++ +G+ v++      +  ++v+va +   d+a++  +Gs +
  MMETSP1174-20130828|17386_1 496 CTFFGSILTIGLLAYVMVDAATRIGATLNIPDVVMGITVLAAGTSVPDLLSSVIVARQGEGDMAVSSSIGSNI 568
                  5678899999999****************************999999************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.18s 00:00:00.80 Elapsed: 00:00:00.52
# Mc/sec: 1680.32
//
Query:       MMETSP1174-20130828|17394_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 955.35
//
Query:       MMETSP1174-20130828|17398_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   30.9   2.5    0.00036   17.5   0.3    2.0  2  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   8.8e-08   0.00036     416     459 ..       4      47 ..       1      54 [. 0.88
   2 !   13.5   0.0   1.5e-06    0.0062     416     459 ..     135     178 ..     121     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8.8e-08
    TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                   +++e+++l+ +r +ar +k+++ aD++R+++ ++g+ + D+ +
  MMETSP1174-20130828|17398_1   4 MDEEEINELLSRRDDARARKDWATADALREQIRSRGVQVFDKDR 47 
                  45789*********************************999965 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.5e-06
    TIGR00435 416 delgeledlieersearkkkelkkaDkiRdellkkgivLeDtpn 459
                   ++  ++ ++++r+ear +++++ +D++Rd+l+  g+ + D+ +
  MMETSP1174-20130828|17398_1 135 RDEMIIKTVLADREEARMRRDYATSDALRDRLIACGVSIYDEDK 178
                  445567888899**************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|17400_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 999.92
//
Query:       MMETSP1174-20130828|17402_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.3   3.3       0.16    9.3   0.4    2.1  2  TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> TIGR00558  pdxH: pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   3.9e-05      0.16     116     202 ..      23     112 ..      15     116 .. 0.91
   2 ?   -0.4   0.1     0.036   1.5e+02     197     206 ..     298     308 ..     215     317 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 3.9e-05
    TIGR00558 116 kvekldaeesekyfksrPrasriGawaseqskvisdreeLeekalkekekfeeaeipk...PdyWGGyrvvpeeiefWqGrpsrLhdrlv 202
                  k ek++++ s+  fk   ++sr  + +++ ++  + +e+L ++al+++e++++a ip+   P +   +  + ++ e+ qG +  +h+rl+
  MMETSP1174-20130828|17402_1  23 KEEKIKRDLSDCSFKPTLYTSRRSSASTSTADNQPRHEKLYQQALEKEERRRSAPIPTksdPTFSPRLATSAKTREWLQGDDRPVHERLH 112
                  5699*********************99999*************************985455889999999*****************986 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.036
    TIGR00558 197 Lhdrlvyrr.e 206
                  +hdrl y+  e
  MMETSP1174-20130828|17402_1 298 VHDRLYYNSpE 308
                  57777776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1645.46
//
Query:       MMETSP1174-20130828|17408_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1174-20130828|17403_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.48
# Mc/sec: 2227.32
//
Query:       MMETSP1174-20130828|17410_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|17412_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|17411_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.4   0.0      0.041   11.1   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     1e-05     0.041      82     125 ..      53      96 ..      12     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1e-05
    TIGR03611  82 ahvvGhalGgliglelalrkperlaklvlinaWskldphtrrCf 125
                   h +G alG++ g+ela r+p+   ++v+i +    +p+ +  f
  MMETSP1174-20130828|17411_1  53 GHSLGGALGTIFGVELATRYPKLRVTVVSIGSPRVGNPAWETLF 96 
                  467888999999**********8888899887777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.65
# Mc/sec: 460.95
//
Query:       MMETSP1174-20130828|17417_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|17416_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|17415_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.3   0.5     0.0032   15.0   0.3    1.2  1  TIGR02586 cas_devS: CRISPR-associated protein Cas5/DevS, subtype MYXAN


Domain annotation for each model (and alignments):
>> TIGR02586  cas_devS: CRISPR-associated protein Cas5/DevS, subtype MYXAN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   7.8e-07    0.0032      22      84 ..      42     106 ..      27     140 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.8e-07
    TIGR02586  22 etatllpP..stayGllLsLvGiemreReeeascevkagvaaavtrsasavklrRsrrlgssgge 84 
                   t++ l P  s+a+G+l    G++++ Re  as  + a+ a a  ++a++vk  R + lg  +++
  MMETSP1174-20130828|17415_1  42 VTTPSLRPaaSAAVGMLPHGGGESEEAREGSASAATAATAATAGEVAATTVKKHRRQSLGPKKKK 106
                  4555444422789********************99999999888888888888888877644332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|17421_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 215.09
//
Query:       MMETSP1174-20130828|17419_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    5.8   9.0       0.33    9.6   1.5    2.4  2  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.5     8e-05      0.33       9      32 ..     243     267 ..     243     270 .. 0.73
   2 ?   -1.3   0.4      0.22     9e+02       8      24 ..     413     429 ..     411     431 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 8e-05
    TIGR01167   9 snslllllGl.lllglaglllrkrk 32 
                  ++ +l+llG+ ll++l++l+++k  
  MMETSP1174-20130828|17419_1 243 NQFWLILLGFvLLVALIALVAFKFG 267
                  578*******988888666666644 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.22
    TIGR01167   8 ssnslllllGllllgla 24 
                  s+ s+++++ ++ +++a
  MMETSP1174-20130828|17419_1 413 SNASSATAAAAAAAAAA 429
                  45555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1503.98
//
Query:       MMETSP1174-20130828|17425_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    4.7   9.8        2.2    4.7   6.8    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.8   0.00053       2.2     174     236 ..       4      69 ..       1      73 [] 0.56

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00053
    TIGR01651 174 drlsaaiddqqafarvvrellaslelaeelgddeesedeedtdddqpredeqe...eegeeeeegd 236
                  ++++ +id+  a  r +re    l+ +e    d+++ede+++++d   +   e   e+ eeeeegd
  MMETSP1174-20130828|17425_1   4 QKVADQIDKSMAELRRIREAEGMLDQSESDDKDDDDEDEKNNNNDGGGGGASEtliEKREEEEEGD 69 
                  566777777777777777777777777766666666666666666554443331113333444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 267.64
//
Query:       MMETSP1174-20130828|17428_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|17430_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 994.99
//
Query:       MMETSP1174-20130828|17429_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1376.46
//
Query:       MMETSP1174-20130828|17434_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1174-20130828|17436_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 318.33
//
Query:       MMETSP1174-20130828|17438_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.6   0.1      0.023   11.5   0.1    1.0  1  TIGR01379 thiL: thiamine-monophosphate kinase


Domain annotation for each model (and alignments):
>> TIGR01379  thiL: thiamine-monophosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.7e-06     0.023     146     179 ..      18      53 ..       7      63 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.7e-06
    TIGR01379 146 gAkpGDlvvVtgtlGdsaaglelllk..kaeveeea 179
                   A+pGD+v++    G+  ag +l++   +a+ e  a
  MMETSP1174-20130828|17438_1  18 VAEPGDWVMIGAAGGRTEAGQKLVNTlvDAADEAVA 53 
                  69*********************9996532222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|17433_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|17440_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   24.7   0.0    2.1e-06   24.6   0.0    1.0  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.2e-10   2.1e-06      62     159 ..       1      93 [.       1      94 [] 0.87

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5.2e-10
    TIGR02160  62 dgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaepkstftlvyanrrsasvmfaeela 159
                  +ge  ++vk+ +GG+ s ++ +  + G+t++v    G  + k + +   h   +a G Git  l i+++ l++ +  ++ l+++ r+  +  + ++++
  MMETSP1174-20130828|17440_1   1 PGEFDITVKVYPGGRASGYL-DRCQIGETIDVF---GLSKGKQRCP-GSHVGFIAYGVGITEALPIAEAELESGEAERVMLLWSSRTYGDTFWHDQIE 93 
                  57899**************8.789********8...5555555555.567778999*******************************99999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|17444_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|17442_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1190.77
//
Query:       MMETSP1174-20130828|17449_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 279.06
//
Query:       MMETSP1174-20130828|17446_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1362.86
//
Query:       MMETSP1174-20130828|17445_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-166  551.4   0.0   2.4e-143  476.0   0.0    2.1  2  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    3.7e-93  310.6   0.0    2.6e-41  139.6   0.0    3.1  3  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
    1.3e-32  111.5   0.0      2e-32  110.8   0.0    1.3  1  TIGR00685 T6PP: trehalose-phosphatase
    3.6e-14   51.2   0.0    6.4e-14   50.4   0.0    1.4  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
     0.0023   14.9   0.0      0.015   12.2   0.0    2.0  2  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
     0.0054   13.6   0.7      0.036   10.9   0.1    2.3  2  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.0   0.0  3.5e-146  2.4e-143       1     381 [.      35     429 ..      35     432 .. 0.96
   2 !   73.4   0.0   4.7e-24   3.2e-21     382     454 ..     453     526 ..     446     528 .. 0.93

  Alignments for each domain:
  == domain 1    score: 476.0 bits;  conditional E-value: 3.5e-146
    TIGR02400   1 rlivvsNRlpvtiseee.....leasaGGLavalkgvlkatggvWvgwsGkeveeeeekklkkelegkitlvpvdLseeevdeyYegfsNsvLWPlfHyr.......ldlaeyerkefeaYkrvNrlfaekvaellkegdvvwvhDYhllllpamlrelgvenvkiGfFlHiPfpsseilrllPvreellegllaadlvGfqteedaenflsavsrllgletle...nkveskertvrveafpigidvdkfaeaakkpevkkeiaelreklkgekvilgvdRLDysKGlperlkafeklLeenpewrgkvvlvqiavpsRedveeYqelreeveelvgringefgeldwvpirylnksvdreeLvalyraadvalvtplrDGmNLVakEyvaaqed 381
                  rli+vsNRlp++++ ++     +e+s GGL++alkgv  + + vWvgw G e++ ee+++++ el +k +++pv+Lse+ v++yY+gfsN+vLWPlfHy+        ++ +++ + ++aY+++Nr+f+e+v++++k+ d++wvhDYhl+ lpa lr++ ++ +++ +FlH+Pfpssei+r+lPvr+ellegll+adlvGf+t+++a++fl++++r+l+ +++e   ++v++k +   v++fpig+d+d+++  +k   v ++++el e++kg+k+ilgvdR+Dy+KG+p++l + e +L ++pe +gkv+l+q+ vp+R+dv+eY++l ++v+elvgring++g+l++ pi+y+n+sv+ +eL a+y++adv+lvt+lrDGmNLV++E+vaaq+ 
  MMETSP1174-20130828|17445_1  35 RLIMVSNRLPLKRVVDKdqkisYEMSPGGLVTALKGVRDDLDFVWVGWLGCETPAEEQESVRDELLKKHNCLPVFLSEDLVNKYYNGFSNDVLWPLFHYVplpmykpNSERKFDMQLWKAYQDANRKFSEAVMSICKPTDLIWVHDYHLMRLPADLRNRMPN-IRVAWFLHTPFPSSEIYRILPVRRELLEGLLKADLVGFHTYDYASHFLESCARVLDEKKMEsspKGVHYKDHYCAVGVFPIGVDPDHIEMICKGRGVVQRVRELVETFKGRKIILGVDRVDYIKGMPHKLLGLELFLARHPEYHGKVTLIQVGVPTRTDVDEYKQLSQQVNELVGRINGTYGTLEYSPIHYINQSVSPTELYAIYHIADVCLVTSLRDGMNLVSHEFVAAQNS 429
                  89*********98877678999*****************************************************************************96665555567889999********************************************99.9****************************************************987665541116788888****************************************************************************************************************************************************************85 PP

  == domain 2    score: 73.4 bits;  conditional E-value: 4.7e-24
    TIGR02400 382 kk.GvLiLSefaGAaeeLkeallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeL 454
                  +  GvL+LSefaG a++L++a+ vnp++++++a+ai ++l+m++ ere r+++l +++++++++ Wa++f++e 
  MMETSP1174-20130828|17445_1 453 RGpGVLVLSEFAGSAQSLSGAIRVNPWNTDELANAILTSLSMSRVERELRHKKLHQYVSSHTAAYWAKTFMAEF 526
                  345********************************************************************986 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   1.9e-38   1.3e-35       3     213 ..      41     253 ..      39     261 .. 0.83
   2 !  139.6   0.0   3.7e-44   2.6e-41     240     406 ..     262     428 ..     250     433 .. 0.97
   3 !   46.9   0.0   4.9e-16   3.3e-13     409     482 ..     455     528 ..     444     532 .. 0.93

  Alignments for each domain:
  == domain 1    score: 120.8 bits;  conditional E-value: 1.9e-38
    TIGR02398   3 hrepydevreadGklvyrdktspnGiiptlkslfadaedgtwvawkevd..eeeqevfdakmtvpaeeklvvarialskeqvksfyeitskeafwpilhtfp.......erfqvdeadwevfkkvnkafaeaaaeeaaegatvwvhdynlwlvpgyirqkrpdlkiaffhhtpfpsadvfnilpwreqivesllccdlvGfhipryvenfvaaarslvkv 213
                   r+p + v + d k  y  + sp G++ +lk + +d  d  wv w   +   eeqe+ + ++      k     + ls++ v+++y+ +s +++wp++h  p        + ++d + w+ +++ n++f+ea     +   ++wvhdy l   p  +r++ p++++a+f htpfps++++ ilp r++++e ll+ dlvGfh   y   f +    +++ 
  MMETSP1174-20130828|17445_1  41 NRLPLKRVVDKDQKISY--EMSPGGLVTALKGV-RDDLDFVWVGWLGCEtpAEEQESVRDELLK----KHNCLPVFLSEDLVNKYYNGFSNDVLWPLFHYVPlpmykpnSERKFDMQLWKAYQDANRKFSEAVMSICKPTDLIWVHDYHLMRLPADLRNRMPNIRVAWFLHTPFPSSEIYRILPVRRELLEGLLKADLVGFHTYDYASHFLESCARVLDE 253
                  57888888888655555..78*********996.788899*****9988334444544444443....4557899************************9872222222345788899********************************************************************************************9876655544 PP

  == domain 2    score: 139.6 bits;  conditional E-value: 3.7e-44
    TIGR02398 240 aldtkdrlvkldaspvGtdperireavaaasveeriekireelagrklilsaervdytkGikellvayerllerreellgkvvlvvaavkaasgmkiyeelqseieelvGrinGrfarvdwtpvrlftralpyeelvaffaaadvawitplrdGlnlvakeyvaarg 406
                   +++kd+   ++ +p+G+dp++i+   +   v +r+++++e  +grk+il ++rvdy+kG+  +l+  e +l r++e +gkv+l+ + v++  ++  y++l ++++elvGrinG +  +++ p+++  ++++  el a +  adv+ +t lrdG+nlv+ e+vaa++
  MMETSP1174-20130828|17445_1 262 GVHYKDHYCAVGVFPIGVDPDHIEMICKGRGVVQRVRELVETFKGRKIILGVDRVDYIKGMPHKLLGLELFLARHPEYHGKVTLIQVGVPTRTDVDEYKQLSQQVNELVGRINGTYGTLEYSPIHYINQSVSPTELYAIYHIADVCLVTSLRDGMNLVSHEFVAAQN 428
                  4889*****************************************************************************************************************************************************************97 PP

  == domain 3    score: 46.9 bits;  conditional E-value: 4.9e-16
    TIGR02398 409 dGvlvlsefaGaavelkgavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellaevke 482
                   GvlvlsefaG+a  l ga+  np+++ ++ +ai ++l+m + e++ r k+l++ v  ++   wa+ ++ae+++
  MMETSP1174-20130828|17445_1 455 PGVLVLSEFAGSAQSLSGAIRVNPWNTDELANAILTSLSMSRVERELRHKKLHQYVSSHTAAYWAKTFMAEFRN 528
                  58********************************************************************9975 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   2.9e-35     2e-32       1     210 [.     554     775 ..     554     796 .. 0.90

  Alignments for each domain:
  == domain 1    score: 110.8 bits;  conditional E-value: 2.9e-35
    TIGR00685   1 arkravlfDlDGTlseivkdPdaavvsdellevLqkLaarsdvalaliSGRklleklllvklpglvlageHGlelkadgktqdvseleek.ipvlkkaavelreelaey.pgvvlErKkvalalHYRqadpelarkrvkellekilsakddfdlkvqdGkavvElkPrdvnKGeivkklleeadvsgisak......dvvvyLGDDlTDedaFrvvr....k 210
                  a+ r+++   DGT++  +  Pd a + +++ + L  ++ +++++  ++SGR+   +    +  ++++a+e G   +  gk ++++ + ++ +  + + ++ +++ ++++ pg+ +E+K+ +l++HY +adp  +  ++k+++  + +   +  l++++G  +vE++ r v+K  +++k+l++       ++      d++ ++G D  Ded+F+ +r    k
  MMETSP1174-20130828|17445_1 554 AKNRLIISGNDGTITRAQTLPDLAKPTQGVIQLLGTICEDPRNTTFIMSGRERKYLETWLGNLNVGIAAEYGYYHRMPGKNKQWQSIGDNiDLKWTELVLPIMKYFTDRtPGSDIEKKESSLTWHYANADPHFGAWQAKDMQLSMEDVLSNLPLEIMQGNNMVEVRHRAVSKASVIEKVLQHLYSAESVEQhqgvelDFIFCVGGDRSDEDMFQLLRrwidK 775
                  688999**************************************66*****66666666678899*********************99987999************************************************999999999*******************************988864444788888*****************99855550 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   9.3e-17   6.4e-14       7     216 ..     564     770 ..     558     773 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 9.3e-17
    TIGR01484   7 DgTLldpk.....lelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqg.eklyaealpedvaevllseekelkeieailkslseryvgtfvedkalevaihysgqk.eleqeldskllerlekigirkdleleailsrsnalqkegetllevlpagvdKgkalqalleeln..........lkkeeilafGDsgNDeemlevag 216
                  DgT++  +     ++ +  +i+ L  + e++  +++i +GR+ ++++ +l +l  ++ ++ae g+  + +g +k+++    +  +++ l    + + +  i+k++++r++g  +e k++ +++hy+ ++   ++  ++++  ++e   +  +l le++         +g++ +ev++  v+K+++++++l++l+          ++ ++i ++G +  De+m++ ++
  MMETSP1174-20130828|17445_1 564 DGTITRAQtlpdlAKPTQGVIQLLGTICEDPRNTTFIMSGRERKYLETWLGNL--NVGIAAEYGYYHRMPGkNKQWQ----SIGDNIDLK---WTELVLPIMKYFTDRTPGSDIEKKESSLTWHYANADpHFGAWQAKDMQLSMEDVLS--NLPLEIM---------QGNNMVEVRHRAVSKASVIEKVLQHLYsaesveqhqgVELDFIFCVGGDRSDEDMFQLLR 770
                  9***********9**************************************65..5555566665555554156666....677788886...99*******************************99877666666777777777775..6668886.........4********************************************************875 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.2e-05     0.015     194     300 ..     308     427 ..     265     436 .. 0.68
   2 ?    0.0   0.0      0.11        77     312     366 ..     467     521 ..     454     528 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.2e-05
    TIGR04047 194 pvvlavGGiEpRKntidlleAfallrkerPd....aqLviaGGatLlDydaYreefearaae.leleiga.........vvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsG 300
                  +++l v  ++  K+  + l  + l  +++P+    + L+  G  t  D d+Y++  +++++e ++   g+           i  +v   el a++++Ad+  ++sl++G  Lv  E +A+ 
  MMETSP1174-20130828|17445_1 308 KIILGVDRVDYIKGMPHKLLGLELFLARHPEyhgkVTLIQVGVPTRTDVDEYKQL-SQQVNElVGRINGTygtleyspiHYINQSVSPTELYAIYHIADVCLVTSLRDGMNLVSHEFVAAQ 427
                  6777777777777776666667777777775333378999999999999999753.44444413333333444777775578899*****************************9999985 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.11
    TIGR04047 312 teyldeeeavvadpsdpesladalaaaleeaar..ealaaagkelaarytWdasAra 366
                   + l  + a+ ++p ++++la+a+ ++l+ ++   e  +++ ++ ++++t +  A++
  MMETSP1174-20130828|17445_1 467 AQSL--SGAIRVNPWNTDELANAILTSLSMSRVerELRHKKLHQYVSSHTAAYWAKT 521
                  5555..678899************888876665112333445566666665555555 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   5.2e-05     0.036     226     319 ..     306     422 ..     291     427 .. 0.66
   2 ?   -3.7   0.0       1.4   9.7e+02     360     401 ..     480     521 ..     477     524 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.2e-05
    TIGR04157 226 eekiilfvGRLdeiKgvkalieaFkkvlkkspncr....LvivG.....d.gdyseylkeakkiwskitft.G............kldkekLyelYqiadvGvlpSlhEqcsyvaiE 319
                    kiil v R+d iKg+   +   + +l  +p+ +    L+ vG     d  +y+++ +++++++ +i  t G             ++ ++Ly +Y+iadv ++ Sl + + +v  E
  MMETSP1174-20130828|17445_1 306 GRKIILGVDRVDYIKGMPHKLLGLELFLARHPEYHgkvtLIQVGvptrtDvDEYKQLSQQVNELVGRINGTyGtleyspihyinqSVSPTELYAIYHIADVCLVTSLRDGMNLVSHE 422
                  5688888888888888888888888888887764444438888844433322455556667777766643323111111111111356689****************9988887666 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.4
    TIGR04157 360 ekkelvekllkllsskkeakelkkkarkryeekYslevmsek 401
                  +++el++++l+ ls +  ++el++k+ ++y   ++  + +++
  MMETSP1174-20130828|17445_1 480 NTDELANAILTSLSMSRVERELRHKKLHQYVSSHTAAYWAKT 521
                  567899999999999999999999999999888887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.17s 00:00:00.79 Elapsed: 00:00:00.60
# Mc/sec: 1755.46
//
Query:       MMETSP1174-20130828|17450_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-54  183.0   2.9    3.1e-53  178.7   2.0    1.9  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    1.5e-28   97.6   0.0    1.6e-27   94.2   0.0    1.9  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    2.2e-25   87.4   3.1    1.1e-24   85.1   2.2    1.7  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit
    1.4e-24   84.5   0.1      2e-24   84.1   0.1    1.1  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   2.0     3e-56   3.1e-53       2     370 ..      10     395 ..       9     397 .. 0.89

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 3e-56
    TIGR03207   2 nedlqalaekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiaradlsvsyvnllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgddyvlngektsisaadqadaavvfartgsveegargisallvpmdlpgitrnrfd.cigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkd...hglphtse.......a........amckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiare 370
                  ++d+  + + ar fa++ +ap   + d+   +    lr+   lgf g  +  e g   +  +   +++ee+a a  s +    +  ++  ++   +  +    wl  l + ++l + +ltep +gsdaa+lr  + rdgd+yvlng k+ is    +d+ +v+ rtg ++    gis+++v    pg++  + +   g  +    +++fed rv+ + ++g eg+gf   m+g+d  r  i    ++ ar +l  +  yv++r+ fg+ lsa+q v f lad+ t v+aarl+  ++  l +   h   ht+        a        am k  a    + v    l  hg  gy ++ ++e+ +rdv   qi +gt +im+ iiar 
  MMETSP1174-20130828|17450_1  10 TDDQIEFQQLARSFAEKEMAPHAAQWDRESFFPVPTLRQAAGLGFGGIFVKHESG-SQLSRVDGAIIFEELAAACTSTTAYLTIHNMCAWMVDTFGDENQKDRWLPSLCSMDTLASYCLTEPGAGSDAASLRTTATRDGDHYVLNGSKAFISGGGTSDVYLVMVRTGGEAG--GGISCVVVEAGTPGLSFGAQEkKLGWNTQPTSAVIFEDCRVPVANRIGAEGDGFKIAMKGLDGGRLSIAACSIGAARECLRLSTSYVTDRQQFGQSLSALQSVQFKLADMATDVHAARLMVHHAAALLEipaHHTAHTASlaggadgArmsatvacAMAKRTATDAGFRVCDTALQLHGGYGYLKDyPIERYFRDVRVHQILEGTNEIMRHIIARA 395
                  6788889999***********************************8887776665.568899999********9999877777899*********************************************************************************9775..59*************98877615799999999****************************************************************************************99987776511144444432222222212222222368888888888999999*************99**************************96 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.6e-30   1.6e-27      60     393 ..      59     397 ..      46     398 .] 0.78

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 1.6e-30
    TIGR03204  60 pkqyggtgwtsvqdyifneelqaapapqplafgv.smvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekkgdkyiingqktwttlaqhadlifclcrtdatakkqegisfilvdmkskgitvrpiqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgiar..vgvskerirrikelaakvesggkpviedakfreklaaveielkaleltqlrvvadegkhgkgkpnpassvlkikgseiqqattellmevigpfaapy.......dvhgddgsneamdwtaqiapsyfnnrkv.siyggsneiqrniiakavl 393
                   k+  g+  + v+  i+ eel aa + +   + +  m   ++ tfg+e+qk r+lp ++ +d      ++epg+gsd asl+t a + gd+y++ng k++ +    +d+ ++++rt   a    gis ++v+  + g++    +   g  ++    v+f+d  vp+ n +g e  g+  a   l   r  ia   +g ++e +r      ++ +  g+ +   + ++ kla +  +++a  l      a      +   + as      g+ +  at    m       a +       ++hg  g     d+       yf + +v  i  g+nei r iia+av+
  MMETSP1174-20130828|17450_1  59 VKHESGSQLSRVDGAIIFEELAAACTSTTAYLTIhNMCAWMVDTFGDENQKDRWLPSLCSMDTLASYCLTEPGAGSDAASLRTTATRDGDHYVLNGSKAFISGGGTSDVYLVMVRTGGEA--GGGISCVVVEAGTPGLSFGAQEKKLGwnTQPTSAVIFEDCRVPVANRIGAEGDGFKIAMKGLDGGRLSIAAcsIGAARECLRLSTSYVTDRQQFGQSLSALQSVQFKLADMATDVHAARLMVHHAAALLEIPAHHTAHTASLAGGADGARMS-ATVACAMAKRTATDAGFrvcdtalQLHGGYGYL--KDYP---IERYFRDVRVhQILEGTNEIMRHIIARAVI 397
                  577788999999999*9****9999887776666369999****************************************************************************9877..57**************998776655522566899************************99999999999853378999*******************9999999999**9999999988876655554444444444555555555555543.333333444444444440000000444444332..2332...356887766536999999999999999986 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   2.2     1e-27   1.1e-24      55     356 ..      57     376 ..      46     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 1e-27
    TIGR03203  55 pfseadggfgagavetmivmealgkalv.lepylatvvigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakkkgdgwvidgekfvvlngeaadtlivtartkgarrdrtgigvflvpadakgvtkkgyptqdglha...aditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalf...............atmaadfddakeran.aiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrlt 356
                   f + + g     v+  i++e l  a      yl+   ++  ++   g ++qk  +lp +       +++  e  +  d + + tta + gd +v++g k  +  g ++d  +v  rt g+     gi   +v a++ g++  +   + g ++   + + +   +v     ig   +++++  + +d  r +++a ++g+  e l+ +  y+  r+qfg ++ ++q++q + adm   v  ar m                  a++a   d a+  a+ a a ak     ++  v + ++qlhgg g   ++ i  yf+ + 
  MMETSP1174-20130828|17450_1  57 IFVKHESGSQLSRVDGAIIFEELAAACTsTTAYLTIHNMCAWMVDTFGDENQKDRWLPSLCSMDTLASYCLTEPGAGSDAASLRTTATRDGDHYVLNGSKAFISGGGTSDVYLVMVRTGGEA--GGGISCVVVEAGTPGLSFGAQEKKLGWNTqptSAVIFEDCRVPVANRIGAEGDGFKIAMKGLDGGRLSIAACSIGAARECLRLSTSYVTDRQQFGQSLSALQSVQFKLADMATDVHAARLMVHHaaalleipahhtahtASLAGGADGARMSATvACAMAKRTATDAGFRVCDTALQLHGGYGYLKDYPIERYFRDVR 376
                  46777788888899999*****9988752678****************************988777778889999*******************************************9986..579*************9988888877764222678899********************************************************************************9986541111111211111114566677888876653677889999999999************************9764 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.1   1.9e-27     2e-24       9     364 ..      15     380 ..       7     384 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.1 bits;  conditional E-value: 1.9e-27
    TIGR04022   9 ealeiarelaa.efaeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipqnhfallevlrlegseeqkrfffeevlaGeRfgn.alseagtk.nvkelktrlerdgdglrldGrkfystGalfahw..ipvlaldee.grevlafvprdapGltviddWsgfGqrttasGtvlldevrveaeevvpvq.kafdrptlagpvaqliqaaidvGiaraaledtlafvrekarpwidsgvekasdDpltiaevgelairleaaeallerageavdaaaaep.teesva........aasiavaeakvltteialeaaskLfelaGtrstlaelnldRhWRnaRthtl 364
                  e  ++ar++a+ e+a++aa+ Dre  +Pv  l + +  G  gi v ++  G ++s +  a +++ ++aa +s +     h ++  ++ + g+e+qk ++  ++ + + ++   l+e g+  ++++l+t+ +rdgd+++l+G k++ +G   +++  + v +  e+ g   +++v++++pGl+   + + +G  t    +v++++ rv+ ++ + ++ + f+ +        l  aa  +G ar  l+ ++++v ++++  +   +        +  +++++a++++aa+ ++++a++ ++  a+++ +++s a        +a++a a ak  +t+++  + ++ ++l G  + l+++ ++R++R++R+h +
  MMETSP1174-20130828|17450_1  15 EFQQLARSFAEkEMAPHAAQWDRESFFPVPTLRQAAGLGFGGIFVKHE-SGSQLSRVDGAIIFEELAAACTSTTAYLTIHNMCAWMVDTFGDENQKDRWLPSLCSMDTLASyCLTEPGAGsDAASLRTTATRDGDHYVLNGSKAFISGGGTSDVylVMVRTGGEAgGGISCVVVEAGTPGLSFGAQEKKLGWNTQPTSAVIFEDCRVPVANRIGAEgDGFKIAMKGLDGGRLSIAACSIGAARECLRLSTSYVTDRQQ--FGQSLSA---LQSVQFKLADMATDVHAARLMVHHAAALLEIPAHHTaHTASLAggadgarmSATVACAMAKRTATDAGFRVCDTALQLHGGYGYLKDYPIERYFRDVRVHQI 380
                  556789999973699******************************777.5789**********************99************************9999888865278888764278899*******************9998887751144444444415566999**********************************988777665166766655556789999*******************99654..3332322...2345668899999999999999999999996555442444433222222226999*********************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.54
# Mc/sec: 972.81
//
Query:       MMETSP1174-20130828|17452_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1149.69
//
Query:       MMETSP1174-20130828|17457_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|17458_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.2   0.3      0.032   11.8   0.2    1.2  1  TIGR03941 tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein


Domain annotation for each model (and alignments):
>> TIGR03941  tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   7.7e-06     0.032      88     148 ..      42     112 ..      23     119 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.7e-06
    TIGR03941  88 dvdvpdedddeeeeaeaepwp..............eGDldllaDlGlseeeLvalvddedllpaevlaeiaerlg 148
                  dvd++d+    ++++  +  p              eGD+++l+    +++eL+al++d + l    laeiae+l 
  MMETSP1174-20130828|17458_1  42 DVDMDDPKR-RKQKSGSRRAPrklsykenleyeslEGDIEVLSE---NAAELEALINDGGTLGYSELAEIAEKLA 112
                  344433333.2222333334455888888888899********8...79***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 650.52
//
Query:       MMETSP1174-20130828|17464_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|17454_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1867.85
//
Query:       MMETSP1174-20130828|17467_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 553.62
//
Query:       MMETSP1174-20130828|17469_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|17466_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   34.3   0.1    0.00013   18.2   0.0    2.3  2  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.3e-08   0.00013      19      98 ..       2      87 ..       1     168 [. 0.85
   2 !   14.0   0.0   6.2e-07    0.0026     291     523 ..     305     538 ..     276     558 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.3e-08
    TIGR00578 19 vdaskamfeevdgedeltpfdmsikaiksvylskiissdkdllavvlyGtekdknsv.......nfkniyvlqdldnPGakrvleld 98
                 vd s +m  + ++  ++t ++ +++ ++ ++ ski+ s+ + ++++l+Gte+ +n+        n+ n+ vl  l+ P      +l+
  MMETSP1174-20130828|17466_1  2 VDVSMSMGVKAES-SSKTRLEEALEGVRMMIESKILQSKTNEVGIILFGTEDTDNPLaedmgdgNYENVTVLAPLERPAVSLTAQLE 87
                 7888888887776.789**********************************9999743333334899*********99876655555 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.2e-07
    TIGR00578 291 PsdtkrsqeyGsrkivlekeeteelkrld.ePGllllGfkPlsllkkqhylrPslfvyPeeslvrGsttlfsalllkclekkvaalcryisrrnvaPklvalvpqeeelddqkiqvvPpGfqlvflPfaddkrkldf...tekvkatreqvdkmkeiveklrft...yrsdsfenPvlqqhfrnlealaldllea..e...qakdltlPkveklkkrlGelvdefkelvyPpdyapegkvakrkq 523
                  P  + +   yG+  + l   + e +k       l++l f P++l + ++ +  ++ + P  +  r s  +  al ++ l  k  a+ r++ r+n  P+l  l       +  +       + l ++Pf dd r  +f     k+  + +q + + ++v++l +    ++ +s   Pvlq+  ++l a a d + +  e   ++k +  P +e +  ++ + ++ f e       a e  ++krk+
  MMETSP1174-20130828|17466_1 305 PEALVKGFRYGKDYVPLSLADREAMKVPSeRSELQILAFSPVALTQPEDSIGDTKCIIPVIGNAR-SEAVVGALAKSLLVAKRQAIVRFVGRKNGDPQLGVLRHDSSCSEYAR-------LILTQIPFDDDIRGYNFppvNPKLLPSAKQRAAAATVVKQLSLAddaFHLESSFSPVLQRVKQTLIARARDPKVPlpEidaRVKAYMNPSQEMMV-HAKSALKSFEEKFK--FTAVEKASRKRKH 538
                  555678889999999999999999998651578**************************999876.77899****************************98866555544444.......456799*******987732234678888888999999999988523367777778*************999764322222257778888887664.45566666666432..2344555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.30
# Mc/sec: 3189.74
//
Query:       MMETSP1174-20130828|17470_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|17471_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|17468_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1354.11
//
Query:       MMETSP1174-20130828|17474_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|17478_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-05   18.6  10.4    7.8e-05   18.4   7.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00054   15.6  10.0    0.00061   15.4   7.0    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.02   13.1   3.5      0.034   12.3   1.7    1.8  2  TIGR02559 HrpB7: type III secretion protein HrpB7
      0.026   10.8   8.6      0.034   10.4   5.9    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.091    9.5   7.1       0.11    9.3   4.9    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   7.2   9.6e-08   7.8e-05     825     938 ..      22     135 ..       2     215 .. 0.45

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.6e-08
    TIGR02168 825 eerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleelev 938
                  +++  ++++ ++++++++++++ + ++++++  +le ei++l++el++ +++l+ ++++ ++ + + +++re++e+l++ + +  +++ +l ++++  ++++ q+ ++l+++e+
  MMETSP1174-20130828|17478_1  22 RQKNVKSSDPLKDAQRTFRMIDVRDKNTKQRKVRLEYEINNLQQELDDVNDQLAGMEESSEKCKLDAHARREQMESLTKCISDSADHQYQLCKQISGVKNAQGQIAAKLSRFEA 135
                  222223333344444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   7.0   7.4e-07   0.00061     326     444 ..      26     145 ..       2     215 .. 0.49

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 7.4e-07
    TIGR02169 326 akaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieek.iaeleeel 444
                   k    ++  +++ + ++ + ++ k+++ +l+ e+++l++el+++  +l+ +++++++ +   ++++e++e+l++ + ++  ++ +l  +   +++++ ++ a+l r e++ i e+e   
  MMETSP1174-20130828|17478_1  26 VKSSDPLKDAQRTFRMIDVRDKNTKQRKVRLEYEINNLQQELDDVNDQLAGMEESSEKCKLDAHARREQMESLTKCISDSADHQYQLCKQISGVKNAQGQIAAKLSRFEASsILEVERGY 145
                  222333444555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555543133333333 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.7   4.2e-05     0.034      13      65 ..      49     101 ..      35     138 .. 0.75
   2 ?   -1.2   0.0      0.63   5.2e+02      25      56 ..     162     193 ..     152     206 .. 0.52

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.2e-05
    TIGR02559  13 ktrrderlraeleelraaleeadaelaekesqaeakedrldrhaarlddlatg 65 
                   ++r+ rl+ e+++l+++l++++ +la  e+  e+++ ++++  ++++ l+  
  MMETSP1174-20130828|17478_1  49 TKQRKVRLEYEINNLQQELDDVNDQLAGMEESSEKCKLDAHARREQMESLTKC 101
                  3578899******************************9999999999999877 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.63
    TIGR02559  25 eelraaleeadaelaekesqaeakedrldrha 56 
                  + +r++ ++     ++k++ +     rl++  
  MMETSP1174-20130828|17478_1 162 KGRRRRTDNSSSSTKKKKQPLPDNLPRLADLV 193
                  34444555555555555555444444444444 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.9   4.2e-05     0.034     372     498 ..       7     136 ..       2     143 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.2e-05
    TIGR03185 372 dselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkie..tvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelerviklad.kvkktleeFrek 498
                  +++ + l+++++ v+r+k+ ++s  lk+++  ++  +  dk+ +  +v  e ++++l++el++ + ++a +e   e+ +  +++++e++e+l+k +   ++++ +  ++   +k a+ ++   l +F+  
  MMETSP1174-20130828|17478_1   7 GHNDEALTRQMTLVERQKNVKSSDPLKDAQRTFRMIDVRDKNTKqrKVRLEYEINNLQQELDDVNDQLAGMEESSEKCKLDAHARREQMESLTKCISDSADHQYQLCKQISGVKNAQgQIAAKLSRFEAS 136
                  5566778888888888888888888888888888777777766511466677888888888888888888888888888888888888888888887777777777777677777776777777777655 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.9   0.00013      0.11      99     220 ..      15     135 ..       4     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00013
    TIGR01843  99 rlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaelek 220
                  r  ++++ +++   +++ l+++++  ++++   ++ ++rk  l+ ++++l+++++  +++l+g+++  ++ + ++++  e++e+l k  ++ +  + +l ++   ++++qg++a + ++ e+
  MMETSP1174-20130828|17478_1  15 RQMTLVERQKNV-KSSDPLKDAQRTFRMIDVRDKNTKQRKVRLEYEINNLQQELDDVNDQLAGMEESSEKCKLDAHARREQMESLTKCISDSADHQYQLCKQISGVKNAQGQIAAKLSRFEA 135
                  444454444444.3334455445777888888899999999999999999999999999999999999999999999999999999999999999999999999999999999888777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 954.72
//
Query:       MMETSP1174-20130828|17479_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1174-20130828|17483_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1596.24
//
Query:       MMETSP1174-20130828|17484_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 1230.94
//
Query:       MMETSP1174-20130828|17489_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1733.46
//
Query:       MMETSP1174-20130828|17494_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|17495_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 636.65
//
Query:       MMETSP1174-20130828|17496_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   39.0   0.9    1.8e-10   39.0   0.6    1.5  2  TIGR00494 crcB: protein CrcB


Domain annotation for each model (and alignments):
>> TIGR00494  crcB: protein CrcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.48     2e+03      30      47 ..      17      34 ..       5      43 .. 0.56
   2 !   39.0   0.6   4.4e-14   1.8e-10       9     107 ..      67     169 ..      59     174 .] 0.76

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.48
    TIGR00494 30 lPlgtltvnliGalilGl 47
                 lP+g  +  +   ++l +
  MMETSP1174-20130828|17496_1 17 LPVGLALCVIETLVVLSI 34
                 555544444444444444 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 4.4e-14
    TIGR00494   9 lGallRyllskvlsallkgeslPlgtltvnliGalilGllaylsqlavisadl.kll..iatGflGalttFstfslevlkLlqeg....rlkeavlyilvtlvgsl 107
                   Ga+ Ry+ls    + + ++ +P+ t+++n+ Ga+ + ++ +l    v ++   ++l  i+tG +G l t s+f  e   Ll+ +    ++ +a  y++ +l g+l
  MMETSP1174-20130828|17496_1  67 SGACTRYFLSG---KNKSFKTFPVYTFLANMAGAVLIAVIFHLNSHVVSNDRAgSVLsaISTGAVGCLSTVSSFINEYKALLNDStdraKMYHAQRYVICALGGGL 169
                  79********9...66777789*****************8887777666665414544589*******************99865222255666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 499.26
//
Query:       MMETSP1174-20130828|17500_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   18.8   0.0    0.00016   18.5   0.0    1.1  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family


Domain annotation for each model (and alignments):
>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.8e-08   0.00016     319     370 ..      53     104 ..      37     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.8e-08
    TIGR01373 319 ilelfpilsrvrllrswgGivdvspdaspiiaktpldnlylncGwgtGGfka 370
                    +l p ls +r  + w+G+  v+p ++ ++++     l++ cG g G f  
  MMETSP1174-20130828|17500_1  53 QSKLEPFLSDMRASKGWTGVAGVVPKQAMLLEELACRHLFVYCGHGAGEFFV 104
                  45788*******************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 842.70
//
Query:       MMETSP1174-20130828|17502_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1174-20130828|17504_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   14.8   5.0     0.0024   14.5   3.5    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.5   5.8e-07    0.0024     233     302 ..      31     101 ..      16     109 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.8e-07
    TIGR01651 233 eegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpg..eakrpdrpftdlneevdykvftsa 302
                    ++++ + ++++++++++e+ + +a+ +dd d +d+dded +  g  +  r+++ +t +++++++ v+t  
  MMETSP1174-20130828|17504_1  31 MRKKDSLKDDDSDSSNDHNEDDDDDASGSDDSDSEDDDDEDHK-KGtfHLVRNSKIYTFVADDIEWTVITVC 101
                  3456677889999999999************9*9999999987.5512567999999*99******999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1174-20130828|17506_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1401.82
//
Query:       MMETSP1174-20130828|17511_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.47
# Mc/sec: 471.79
//
Query:       MMETSP1174-20130828|17512_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|17515_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 183.84
//
Query:       MMETSP1174-20130828|17514_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|17521_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|17520_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 231.56
//
Query:       MMETSP1174-20130828|17518_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       409  (0.0997075); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.66
# Mc/sec: 1031.91
//
Query:       MMETSP1174-20130828|17522_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 604.95
//
Query:       MMETSP1174-20130828|17525_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|17534_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1174-20130828|17535_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.5   0.3      0.016   13.3   0.2    1.1  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit


Domain annotation for each model (and alignments):
>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.9e-06     0.016      28      76 ..       2      52 ..       1      57 [. 0.90

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-06
    TIGR02926 28 eAreeAkelleeaeeeAeklkeeil..eeaeeeiekEaekIleegekeiee 76
                 +A  e +++l ++e+  +  +ee++   ++++  ++E ++++ e+++e+e+
  MMETSP1174-20130828|17535_1  2 DALPETAKVLRSVEKMTSPSGEESFvvRDKRKDQREEEDDVRWEEKREAET 52
                 67789999***************86447999*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 375.97
//
Query:       MMETSP1174-20130828|17533_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1204.00
//
Query:       MMETSP1174-20130828|17539_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|17543_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.4   1.2      0.028   11.2   0.8    1.1  1  TIGR00998 8a0101: efflux pump membrane protein
      0.046   10.4   1.8       0.05   10.3   1.2    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   1.4e-05     0.028      86     160 ..      29     103 ..       5     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
    TIGR00998  86 eaklaalvrkvkqleikvkklqakveslkikleqareklkqaeldleRresllkkgliskEeldrarkallsaka 160
                  ++k+++l r  + l    ++lq++++ +k  ++q  ++l++  l+l+R+++ l++      e+  a++a +++ +
  MMETSP1174-20130828|17543_1  29 KEKMSSLYRGQTSLREIEHELQSQIDLEKTVVQQRSDALRRQVLKLARQRAFLREERKRSREISSALEAEKKEME 103
                  789******999999999*************999999999999*****999999988888888888777766655 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   2.5e-05      0.05     105     195 ..      32     100 ..       3     119 .. 0.54

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
    TIGR03794 105 LtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdeadkaeae 195
                  +                       ++ + +  L+e   +l+ + ++ +++v++  ++l+r+  kl r+r  l++ rk   +   a+ ae +
  MMETSP1174-20130828|17543_1  32 MS----------------------SLYRGQTSLREIEHELQSQIDLEKTVVQQRSDALRRQVLKLARQRAFLREERKRSREISSALEAEKK 100
                  22......................2333333355555555555555555555555566666666555555555555544333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 457.36
//
Query:       MMETSP1174-20130828|17542_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 1218.60
//
Query:       MMETSP1174-20130828|17550_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|17551_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|17552_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1515.87
//
Query:       MMETSP1174-20130828|17558_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|17562_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 299.98
//
Query:       MMETSP1174-20130828|17560_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|17566_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 459.32
//
Query:       MMETSP1174-20130828|17556_1  [L=1147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.18s 00:00:00.84 Elapsed: 00:00:00.56
# Mc/sec: 2703.42
//
Query:       MMETSP1174-20130828|17565_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   36.7  18.0    4.3e-10   36.5  12.5    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
        0.1    9.4  35.6       0.14    9.0  24.7    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  12.5   2.1e-13   4.3e-10      21     166 ..      11     162 ..       4     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.1e-13
    TIGR01642  21 keRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrr.srkrsssnekkkddkkrslwdvkppkyeavtavqakasqvan.....svpgiaqkssltstekllaegskitdlpvl 166
                   eR+R R+r+r+ +RdR+rr  +r  r  sRdR  r + s +++s    ++rr R   rrrsrs +  ++ rrr + +rs s +   dd  +++    +++   v++ q + + +++     sv   + k  +++++  + +g + t lp +
  MMETSP1174-20130828|17565_1  11 MERKRSRKRSRDHSRDRERRRDHRPERSLSRDRSDRYHSSVRRRSSPSPHKRRDRVSRRRRSRSIDVAERYRRRrGGHRSASSSPDSDDSSQTNGLASKAGDGVVNPGQPNLTDIMKlnptlSVGECVMKLQMMNNMSAMMQGGNATSLPGQ 162
                  57777777777777777777668888889999999988999999999999999999999999999988876654145555555555444444444445555555655554443333211122466678888999999999999999888865 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  24.7   6.6e-05      0.14       3      91 ..      13      92 ..       7     121 .. 0.41

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.6e-05
    TIGR01622  3 rdrereRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrk 91
                 r r+r+RsRd  + +dr+r+rd+  ers +r+r+ +  +s  r r     ++ rd+ + r+r + ++  +++ r+r+ +r         
  MMETSP1174-20130828|17565_1 13 RKRSRKRSRD--HSRDRERRRDHRPERSLSRDRSDRYHSS-VRRRSSPSPHKRRDRVSRRRRSRSIDVAERYRRRRGGHR------SAS 92
                 2222222222..2233444444444443333332222221.123333333444444444444444444444444433332......222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 775.94
//
Query:       MMETSP1174-20130828|17564_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1157.10
//
Query:       MMETSP1174-20130828|17568_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|17570_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.60
# Mc/sec: 167.19
//
Query:       MMETSP1174-20130828|17572_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:01.11
# Mc/sec: 359.11
//
Query:       MMETSP1174-20130828|17574_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|17571_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 2160.85
//
Query:       MMETSP1174-20130828|17579_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 224.87
//
Query:       MMETSP1174-20130828|17577_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1277.77
//
Query:       MMETSP1174-20130828|17578_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|17580_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|17583_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 208.98
//
Query:       MMETSP1174-20130828|17586_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|17591_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 788.72
//
Query:       MMETSP1174-20130828|17599_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.4   0.0      0.021   10.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.2e-06     0.021      25      52 ..      16      44 ..       4      55 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.2e-06
    TIGR03903 25 FrReialCarLshPnivaLlDs.Geaedg 52
                   Rei++  +L hPni+ Ll      +++
  MMETSP1174-20130828|17599_1 16 VWREIEVMRQLDHPNIITLLGArCSNPPD 44
                 569****************9751344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1174-20130828|17600_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-06   24.5   0.0    3.9e-06   24.2   0.0    1.1  1  TIGR01177 TIGR01177: TIGR01177 family protein


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.5e-10   3.9e-06     226     297 ..      23      98 ..      18     106 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 9.5e-10
    TIGR01177 226 hYgiedfkvkrldakklplrs....esvdaiatDpPYgrstkaagekleeLyeksleeleevlkeeGlivvavpkk 297
                   Y ie+   +r++a++ + ++    + +da+  DpPYg s++a g +  e ++++l  + + l+++G+++++vp +
  MMETSP1174-20130828|17600_1  23 SYLIEGGAHSRGNARDNQSTDtdtvQLFDAMCCDPPYGLSAAAFGLGHREVIRNILAVASQRLRGGGRLCLLVPFD 98 
                  6788887888889988887744345678********************************************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 639.95
//
Query:       MMETSP1174-20130828|17602_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|17603_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|17604_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|17605_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.47
# Mc/sec: 241.51
//
Query:       MMETSP1174-20130828|17606_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 276.35
//
Query:       MMETSP1174-20130828|17598_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-11   39.5   0.0    1.1e-10   38.9   0.0    1.2  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.039   11.0   0.0    1.5  2  TIGR00661 MJ1255: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   5.4e-14   1.1e-10     160     350 ..     334     538 ..     309     541 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 5.4e-14
    TIGR01133 160 gnpvreeirelp...aaka..dlkarenkltilvlGGSqGAkilNelvpkalaklaek..............lilviiqagkqdlekvkrayselg..iaekieefidndmaaaykaadLvIsRAGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqkellteklveklkkllkdearleemaeaaqklakkkaakrla 350
                  g p+r+ + +++   ++++  +l ++++ +t l++GG  G   + ++ +++ a++                   +v++++g++++   k a ++ +  +  +++ f++ +m ++++a+d +++ AG +t+aE +  glP+ l  +    +++  N  +++++g g +  + +    ++++ + + + ++  l+e+++ a++ ++++a+ ++a
  MMETSP1174-20130828|17598_1 334 GLPIRAGFWKPDdrpKEEIrtELGLDTKMPTALIVGGGDGVGGVARITEAIEAEVVSGgpitdglhgvvehpKTQVVVVCGSNEQVRAKLAAKDWNdrVSVNVQGFVS-NMEDYMAASDCIVTKAGPGTIAEAMCRGLPTMLSCFL--PGQEKGNVDYVQELGFGEYSSNPK----EIASTVMSWIDNPDHLSELSTLARDNGRPGATYDIA 538
                  555555555554332222255899999*************9999999999999988889999*********9555555555544444433333333348899999999.6*******************************98776..578999***********8877665....666666667777777788899999999999888877 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.29   5.9e+02       1      25 [.     157     181 ..     157     184 .. 0.87
   2 ?   11.0   0.0   1.9e-05     0.039     213     310 ..     409     513 ..     401     518 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.29
    TIGR00661   1 kiLysvcGeGfGHiiRsvaileaLk 25 
                  k+L+ +  +G GH + ++a+ ea  
  MMETSP1174-20130828|17598_1 157 KVLILMSDTGGGHRASAKALEEAFD 181
                  79999999*******9999999875 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.9e-05
    TIGR00661 213 vklvvysyevek.....nelden..velrrlteddfkedlksaeavitsGGfelisEALalgkpllvvPvlgqfEqvsnAvklekLGlgevley.kel.elleaiLD 310
                  v +v++s e  +      + ++   v+++ +   +++  +  ++ ++t+ G  +i EA+  g p +    l   E++ n  ++++LG+ge  +  ke   +   ++D
  MMETSP1174-20130828|17598_1 409 VVVVCGSNEQVRaklaaKDWNDRvsVNVQGFVS-NMEDYMAASDCIVTKAGPGTIAEAMCRGLPTMLSCFLPGQEKG-NVDYVQELGFGEYSSNpKEIaSTVMSWID 513
                  566777777655556663444431155667777.9*****************************9998888877876.899********987752444344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.78
# Mc/sec: 949.31
//
Query:       MMETSP1174-20130828|17611_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 165.83
//
Query:       MMETSP1174-20130828|17613_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1174-20130828|17614_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1174-20130828|17614_2  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 450.48
//
Query:       MMETSP1174-20130828|17619_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.68
# Mc/sec: 139.75
//
Query:       MMETSP1174-20130828|17620_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 423.96
//
Query:       MMETSP1174-20130828|17621_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 324.62
//
Query:       MMETSP1174-20130828|17616_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1851.32
//
Query:       MMETSP1174-20130828|17623_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.024   12.3   0.0    1.3  1  TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase


Domain annotation for each model (and alignments):
>> TIGR02019  BchJ: bacteriochlorophyll 4-vinyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-06     0.024     102     128 ..      50      75 ..      36      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.8e-06
    TIGR02019 102 lrvlltaiakhaWtfaGsGkfsyvskp 128
                  lrvl+t+ +k+a +faGsG fsy ++p
  MMETSP1174-20130828|17623_1  50 LRVLVTS-SKEAIAFAGSGSFSYPLGP 75 
                  6787765.9**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1281.57
//
Query:       MMETSP1174-20130828|17627_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|17625_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.0   3.7     0.0035   14.4   2.6    1.2  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.6   8.6e-07    0.0035      23      68 ..     154     200 ..     140     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.6e-07
    TIGR00599  23 ldtslRChvCkdffkaPvltsCsHt.FCslCiRrcLseepkCPlCra 68 
                  +d    C +C +  k+ v   C+H   C  C  +   + +kCPlCr+
  MMETSP1174-20130828|17625_1 154 VDANSLCIICFERIKNAVFLNCGHGgVCYACALDTCVVSGKCPLCRS 200
                  566667******************648******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 820.91
//
Query:       MMETSP1174-20130828|17630_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 223.37
//
Query:       MMETSP1174-20130828|17632_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 855.29
//
Query:       MMETSP1174-20130828|17634_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   13.0   0.0      0.022   13.0   0.0    1.0  1  TIGR02683 upstrm_HI1419: putative addiction module killer protein


Domain annotation for each model (and alignments):
>> TIGR02683  upstrm_HI1419: putative addiction module killer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.5e-06     0.022      10      48 ..       9      47 ..       3      51 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.5e-06
    TIGR02683 10 ekwlkklkdekakakiaaridrlklgnlgdvkpvgegvs 48
                 ++w ++lkd + ka ++  ++r   g+l ++  + e v 
  MMETSP1174-20130828|17634_1  9 NEWSSELKDFMGKALVKDPVKRSDSGELVKHACIAEDVL 47
                 68**************************99999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|17633_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|17628_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-22   76.7   0.0    1.2e-21   74.7   0.0    1.9  1  TIGR02273 16S_RimM: 16S rRNA processing protein RimM


Domain annotation for each model (and alignments):
>> TIGR02273  16S_RimM: 16S rRNA processing protein RimM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0     3e-25   1.2e-21       2     166 .]     150     338 ..     149     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 3e-25
    TIGR02273   2 llvGkilkahGikGevkvksltddpee.lfkyk.evlilkdsk.....ewlevkvasvkkkkn..klivklegiddreeaeeLkglelfvereelp.eleedeyyltdLigleVv.teegeelGkVkeiletgandvlvves..............kkgkkevliPfveeivkevdlekkkitvdepegl 166
                  ++vG +++ahG+kG v v +  ++  e ++++k +  +l+ +          ++ ++ +++     +iv+l gi+dr++a +Lk ++l+ +r+e   +l+edey + +++gl+V+ +++g  lGkV  i++  +  +  v+               ++  +++l+P+v  iv  +dl +  +++++pegl
  MMETSP1174-20130828|17628_1 150 MNVGTVIGAHGVKGDVTVLVDDEEYAEwILCEKgAKAVLHLKPewrryPRERIRLVEGRRTGTpdRFIVRLSGIEDRDAAGKLKSHKLYTRRSECLkDLQEDEYLIDQIVGLDVIhSATGDLLGKVRGIVTRDE-VFGRVDGghdfidlqvlqttpSEPVQSCLVPMVPSIVVMIDLGAALVKLNPPEGL 338
                  689***************99887655425554413333333222565522555555555554444**************************9986549*****************9999**********98655.44455555555555568889988889************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1134.48
//
Query:       MMETSP1174-20130828|17635_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|17636_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1174-20130828|17640_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.9   0.1      0.013   11.8   0.1    1.0  1  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.2e-06     0.013     228     291 ..      17      77 ..      10      85 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-06
    TIGR03117 228 lreieaeaeaeeglgllpqldlLvvDeahlledalasvlssalslrrlhkaveklkakegkgis 291
                  l e ea+ae++   gl+  l+ L  +e   l da+ + ls  +sl+rlh++ e  + ++  +i+
  MMETSP1174-20130828|17640_1  17 LSECEADAEVQSLSGLV-SLQHLWLNECWGLTDAVLQSLSRLVSLQRLHLHFETFEYSH--NIT 77 
                  78999999998877765.7899999*************************998877443..344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 320.54
//
Query:       MMETSP1174-20130828|17638_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-197  653.2   0.0     3e-197  653.0   0.0    1.0  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
   5.8e-107  355.6   0.0   6.7e-107  355.4   0.0    1.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    5.9e-87  290.0   0.0      7e-87  289.8   0.0    1.0  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    1.2e-71  239.8   0.0    1.4e-71  239.5   0.0    1.0  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    1.8e-71  238.8   0.6    2.5e-51  172.4   0.2    2.1  2  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    4.8e-66  220.9   0.0    7.8e-66  220.2   0.0    1.3  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    1.5e-51  173.2   0.1    9.7e-35  117.8   0.0    2.1  2  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    1.6e-48  163.1   0.0    3.5e-48  162.0   0.0    1.5  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    1.9e-46  156.4   0.0    2.6e-46  155.9   0.0    1.1  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
      8e-45  150.9   0.0    1.5e-42  143.4   0.0    2.0  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    8.3e-25   85.3   0.0      2e-20   70.8   0.0    2.2  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.018   11.8   0.0    1.3  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase


Domain annotation for each model (and alignments):
>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  653.0   0.0  8.8e-200    3e-197       2     401 ..      15     412 ..      14     413 .. 0.99

  Alignments for each domain:
  == domain 1    score: 653.0 bits;  conditional E-value: 8.8e-200
    TIGR01885   2 eevieleekygahnyhplpvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpgehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkklkkeivkevrGkGllnaivideskangreawdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkvl 401
                  e+ i+leeky ahnyhplpvvl++++G++vwdveg++yldflsaysavnqGh+hpki++alv+qa+kltl+sraf+ndv+g +aey t+lfGyd++lpmntG+ea+etaiklar+W+y++k++p+ ka++++aegnf+Gr++a+is s+dp+s+++fGp++p++ +++yn+l+ale++l++  ++ a+f+vePiqGeaGvvvp+dgylk +++lck+yn lliade+qtG++rtGk l+++h++vkPd+++lGkalsgGv+Pvsavl+++e++lt+kpgehGstygGnPl++ava+aalevl+ee+lae+a+  Ge+l + l++ + + v++vrG+Gllnaiv+des+ +g+ awd+c+ lke Gllakpth++iirlaPPl+it+ +++e+v+ii++vl
  MMETSP1174-20130828|17638_1  15 EASIALEEKYNAHNYHPLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSRAFHNDVLGPYAEYTTRLFGYDRILPMNTGVEAGETAIKLARRWAYDVKGVPDGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYNDLAALEQELRD--PNCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGVVPVSAVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQAEEVKCVESVRGRGLLNAIVLDESEKDGTLAWDMCVALKEAGLLAKPTHGNIIRLAPPLCITSAQVDESVDIISRVL 412
                  67899******************************************************************************************************************************************************************************99..*********************************************************************************************************************************************************************************************************************9987 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.4   0.0  1.9e-109  6.7e-107       4     380 ..      27     412 ..      24     413 .. 0.95

  Alignments for each domain:
  == domain 1    score: 355.4 bits;  conditional E-value: 1.9e-109
    TIGR00707   4 qtyarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvelsaadrvffcnsGaeanEaAlklarkaarkk...gkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvkyveyndiealkeaidde.taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggG.vPigavlakeevaealtvGdHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkkiikevrGkGLllGieleaesl.....keivkkleekGllvntagekvlrlvppLiieeeeieeavealeevi 380
                  ++y  l+++++rgkg++v+DveG++YlD+++  + ++ GH+hpk+ +al +q++kl+ +s  ++++     ae    l++ dr+   n G ea E+A+klar+ a ++      k k++ ++ +F GR ++a+s + +p   k+F+p++pg+  v+ynd+ al++ + d   a+ +vEpiqGE+Gvv+++  +lka ++lc+++++lli DEvqtGlGRtGk +  +h +v+PD+l l+kal+gG vP++avl  +e+  ++++G+Hgst+GGnpl ca+a+a+lev+e+e+l e+++ +ge l k l+++  k  +++vrG+GLl+ i+l+++ +      ++  +l+e+Gll +++  +++rl+ppL i+ ++++e v+++++v+
  MMETSP1174-20130828|17638_1  27 HNYHPLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSRAFHNDVLGPYAEYTTRLFGYDRILPMNTGVEAGETAIKLARRWAYDVkgvPDGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYNDLAALEQELRDPnCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGvVPVSAVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQAEEVKC-VESVRGRGLLNAIVLDESEKdgtlaWDMCVALKEAGLLAKPTHGNIIRLAPPLCITSAQVDESVDIISRVL 412
                  79*****************************************************************************************************9998765456799************************************************9999875999********************************************************************99945*************************************************************9998887.59*************9876333455789999**********************************999886 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.8   0.0   2.1e-89     7e-87       9     392 ..      24     411 ..      19     415 .] 0.94

  Alignments for each domain:
  == domain 1    score: 289.8 bits;  conditional E-value: 2.1e-89
    TIGR03246   9 vmvpvyapakfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdatfadkvffcnsGaeaneaalklarkvaldkyga..ekseivafknsfhGrtlftvsvGGqakysedfaplpegikhaayndlealkalisdktca.vivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgG.fpiGalltteelakvlkvGthGttyGGnplacavaekvldlvntaelleGvkqrhelfvdelekinarykvfseirGkGlliGavltee.yaGk.akdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarleka 392
                  +   +y p +++ +rg+G +vwd eg++y+df    +    Gh+hp++ +al +qa+kl  ++ ++ n+     a+  +     d++   n+G ea e+a+klar++a+d  g    k +++  +  f Gr++ ++s    +   ++f+p   g   ++yndl+al++ + d  ca ++vepiqGe+Gvv +++ +lk++ +lc r+nalli devqtG+GrtG+     +  v+pd+l   kal gG +p+ a+l ++e+  ++k G+hG+tyGGnpl+cava + l+++++ +l e    + e++++ l++  ++ k  +++rG+Gll   vl+e+  +G  a d+  a +e+G+l+  + ++++r+ap l i++++++e ++ +++ 
  MMETSP1174-20130828|17638_1  24 YNAHNYHPLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSRAFHNDVLGPYAEYTTRLFGYDRILPMNTGVEAGETAIKLARRWAYDVKGVpdGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYNDLAALEQELRDPNCAgFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGvVPVSAVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQA--EEVKCVESVRGRGLLNAIVLDESeKDGTlAWDMCVALKEAGLLAKPTHGNIIRLAPPLCITSAQVDESVDIISRV 411
                  55679****************************99998899***************************9888888888888778**************************9996547999*****************************************************998789******************************************************************88846*************************************************************97..677899**************875155644899***********************************99877765 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   0.0   4.2e-74   1.4e-71      69     435 ..      44     405 ..      34     412 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.5 bits;  conditional E-value: 4.2e-74
    TIGR03372  69 lvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklak..ayq...sprgkytfiaasgafhgkslgalsataksafrkpfmpllpgfrhvafgdieamlkalqeckktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgllqaiefvdneigyafakelfrrrvlvagtln...naksvrieppltltieqcelvl 435
                  + d +g++yld l  y   n gh  p+++ a+ +q +k  l s+ + + + +  a   + l        +  n+g e+ e+a+kla+  ay+    p gk   i a g f g+s+ a+s+++ ++  k f p++pgf +v++ d+ a+ ++l++ +      a  ++epiqge gv++p ++yl a   lc  + alli devqtg+grtgk ++ +h+nv+pd+l+l kal ggv+p+ a + ++e+  +l  +p  h +t+ggnpl ca a+a+++vl e+ l e+a+++ge ll+gl+   ae  + v   rg+gll ai + + e   ++a ++    +  ag l      + +r+ ppl +t  q++  +
  MMETSP1174-20130828|17638_1  44 VWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSRAFHNDVLGPYAEYTTRLFGY--DRILPMNTGVEAGETAIKLARrwAYDvkgVPDGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYNDLAALEQELRDPN-----CAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGVVPVSAVLGSDEI--ILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQ---AEEVKCVESVRGRGLLNAIVLDESEKDGTLAWDMCV-ALKEAGLLAkptHGNIIRLAPPLCITSAQVDESV 405
                  4699******************************************999999888877776543..335678**************85566533369****************************************************9999865.....677899*******************************************************************************98..57779********************************************87...677899******************999999999864.3445555541114568***********9998765 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   3.4e-21   1.2e-18      16     164 ..      33     184 ..      29     192 .. 0.83
   2 !  172.4   0.2   7.5e-54   2.5e-51     196     419 ..     196     413 ..     185     414 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 3.4e-21
    TIGR00700  16 rvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveeltht..afqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkyt........grpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlp 164
                  +v+ ++++g  + dv+G++++d+ ++ + +n GhshPk+++a+ +q+ +lt t  af+  +   y e + +l       g  + + +n+G ea e a+k+ar+++        g+  v+  ++ f Gr+  +++ ++  + yk GfGPf p   ++P++
  MMETSP1174-20130828|17638_1  33 PVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTsrAFHNDVLGPYAEYTTRL------FGYDRILPMNTGVEAGETAIKLARRWAydvkgvpdGKAKVIFAEGNFWGRSMAAISSSSDPTSYK-GFGPFMPGFVQVPYN 184
                  6778999*****************************************998772256655566665555554......46789999****************8754344444367778888889******9999999999999.*************96 PP

  == domain 2    score: 172.4 bits;  conditional E-value: 7.5e-54
    TIGR00700 196 eqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladG.lPlsgvvGraeildapapGglGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielkeevpaigdvrglGamiavelvdpdttePdaalaekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaala 419
                   + a  ++eP+qGe G +vp++++++a ++lck+ + +liadevqtG+ rtGk +  +h ++kPd++++ k+l++G +P+s+v+G  ei+ + +pG+ G ty+GnPl++a a+a l+++eee+l+e a   g+++ + l    eev+ +  vrg+G + a+ l ++   e d +la  +  a ++aGll  +   +Gniirl +Pl i+ +++de+++i++ +l+
  MMETSP1174-20130828|17638_1 196 PNCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGvVPVSAVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQ--AEEVKCVESVRGRGLLNAIVLDES---EKDGTLAWDMCVALKEAGLL--AKPTHGNIIRLAPPLCITSAQVDESVDIISRVLR 413
                  578999*********************************************************************955*************************************************9988777766554..468899*************99765...889***************75..67889************************99886 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.0   2.3e-68   7.8e-66       9     418 ..      28     412 ..      23     413 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.2 bits;  conditional E-value: 2.3e-68
    TIGR00508   9 keaepplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqn.kge.kekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelkelpkvkdvRvlGaigavelkeekeleerigekiqkkalekgvllRPl.gnviylmppyiiteeeleklveaikeai 418
                  + +  p++ ++++gv+++d +g++++D +s++ ++  Gh+hp++ +a+ +q++kl  +    + ++     ae  +++   g ++++  + G  a E a+K+a ++    kg    k k++  e+ + G +++a+s +++ +  + f ++++  v+vp+ +              l++le+ l++   ++a+++vEP +qg +G+ v s  yLk++++lc++y+ lliaDE+ tG+grtGk   ++h +v+PD+l+l+Kal+gG++p++a+l ++ei  ++  +e      Hg+ty gnpl+cavA+a+le+leee++ e+++   ++l ++l++ +e++ v++vR  G++ a+ l+e+++   +++ +++ ++ e g+l +P  gn+i l pp++it++++++ v++i++++
  MMETSP1174-20130828|17638_1  28 NYHPLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLT-SRAFHNDVLGPYAEYTTRLF--GYDRILPMNTGVEAGETAIKLARRWAYDvKGVpDGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYND--------------LAALEQELRDP--NCAGFMVEP-IQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGVVPVSAVLGSDEIILTVKPGE------HGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQA-EEVKCVESVRGRGLLNAIVLDESEKD-GTLAWDMCVALKEAGLLAKPThGNIIRLAPPLCITSAQVDESVDIISRVL 412
                  4466688899*******************************************99754.33344444455555555555..789*******************9876641444258***********************999999******9988888776..............67889888775..8********.8***********************************************************************************999......***************************************99975.899******************99776.89******************74899********************99886 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   1.1e-17   3.7e-15      20     172 ..      31     185 ..      19     192 .. 0.88
   2 !  117.8   0.0   2.8e-37   9.7e-35     207     431 ..     198     410 ..     190     414 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 1.1e-17
    TIGR00709  20 klplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkyt........GrsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqflpydh 172
                   lp+++++ kG++v+dveG++yldfl+   +++ Gh +++++ +l +  +s l+l +  +   + + ++e    ++      y   ++  +G +a e+a+kla++++        G+++vi   g f G ++ a++ + + +   + +  ++g   +py++
  MMETSP1174-20130828|17638_1  31 PLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQ-ASKLTLTSRAFHNDVLGPYAEYTTRLFG-----YDRILPMNTGVEAGETAIKLARRWAydvkgvpdGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYND 185
                  59***************************************9999875.6889999999999999999988888777.....88888999**************864444445559999*999999*********************************86 PP

  == domain 2    score: 117.8 bits;  conditional E-value: 2.8e-37
    TIGR00709 207 paavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGG.glpl.avlaikkefdafqpaehtGtfrGnqlalatGlealeilkdenlaknaqergerltsalddlikeypeiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkq 431
                   a +++e iqGe Gvv  s  +l+  ++++++ + lli devq+G++r+Gk ++ +h  ++pd++vl ka+ G  +p+ avl+  +   + +p+eh  t+ Gn l  a  ++ale+l +e la+na  +gerl + l+  + e  ++++vrGrGl+  i   de           +d  la  +  a  e +ll +    +g+++rl +p+ i+  +++e + ++ +
  MMETSP1174-20130828|17638_1 198 CAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGgVVPVsAVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQ--AEEVKCVESVRGRGLLNAIVL-DES---------EKDGTLAWDMCVALKEAGLLAK--PTHGNIIRLAPPLCITSAQVDESVDIISR 410
                  4889******************************************************************97736787578888888999*******************************************99997..57899***********99865.444.........3677788888888777787755..46899*************99999988765 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0     1e-50   3.5e-48      16     410 ..      31     412 ..      18     414 .. 0.86

  Alignments for each domain:
  == domain 1    score: 162.0 bits;  conditional E-value: 1e-50
    TIGR02407  16 sfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmatea.kkefletfeevilkPreldykvqftgPtGtnavesalklarkv....t....grenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpeld.vwkPgehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkked....lakkvakkafekgliietsGaedevlkllpaltideeelekGleileqal 410
                    p+v++++kg++++d++g++y+dfl++  a+n Gh ++k+ +al++  ++      l ++++a +++ l  + e+    r + y   ++  tG +a e+a+klar+     +    g+ +v+     f G s+++++ +++ ++ ++ g  +   v++Py++ +         le+ l d        a +++e +qge G+ v s+ +l++ ++lc++++ lli d++q+G GrtG+ +  ++ ++kPd+++l k++sG  +P++ vl + e+  + kPgeh  t+ Gn l    a aale   ++++l+++ + ++e++   l+ + ++  ++++++rGrGll+ + + +++    la  ++ +  e gl+     ++ ++++l p+l i++ ++++ ++i+++ l
  MMETSP1174-20130828|17638_1  31 PLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASK------LTLTSRAfHNDVLGPYAEY--TTRLFGYDRILPMNTGVEAGETAIKLARRWaydvKgvpdGKAKVIFAEGNFWGRSMAAISSSSDPTSYKGFGPFMPGFVQVPYNDLA--------ALEQELRDPN-----CAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKALSGGVVPVSAVLGSDEIIlTVKPGEHGSTYGGNPLGCAVAMAALE-VLEEESLAENASVQGERL---LKGLQAEEVKCVESVRGRGLLNAIVLDESEkdgtLAWDMCVALKEAGLLAKP--THGNIIRLAPPLCITSAQVDESVDIISRVL 412
                  579**************************************9999986543......4455555256778888876..57999***********************8522222333367888877788*******************999999999999997655........5899999975.....5899*********************************************************************99********99975278************************.599999999999888876...5566678899**************9987551111566667777778887654..5789*********************99876 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.0   7.6e-49   2.6e-46      28     335 ..      30     336 ..      24     351 .. 0.89

  Alignments for each domain:
  == domain 1    score: 155.9 bits;  conditional E-value: 7.6e-49
    TIGR00713  28 kgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyGapteaeie..lakeiiervksvekvRlvnsGteatmsavRlaRgft........grdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggG.lPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaeglee 335
                  ++ P++++++kg  ++dv+g++y+D++ +y ++  Gh+h+k+++a+ +++ + +    +  +++   +a+    r+   +++  +n+G ea  +a++laR  +        g++k+i  eG + G + a +            p+s +    ++   +++pyndl ale+ l+  + + ag +vep+ g +gvv p++++l+a ++l+++++alli Dev tG  R  +    +  +v+pD++vlGk l+gG +Pv+a+ g+ ei+ ++ P        t  gnpl  a  +a+l+ leee++ ++ + + e+l +gl+ 
  MMETSP1174-20130828|17638_1  30 HPLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSRAFHNDVLgpYAEYT-TRLFGYDRILPMNTGVEAGETAIKLARRWAydvkgvpdGKAKVIFAEGNFWGRSMAAIS-------SSSDPTSYKGFGPFMPGFVQVPYNDLAALEQELR--DPNCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLgRTGKRLCSDHDNVKPDMLVLGKALSGGvVPVSAVLGSDEIILTVKPGE---HGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQA 336
                  567999**********************************************99888888888763366655.56667799999****************6543333444489999999****998755444.......3456889999999999***************999..67**********************************************87999*********************99945*****************64...477999********************************999975 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.0   4.5e-45   1.5e-42      21     432 ..      34     412 ..      27     413 .. 0.81

  Alignments for each domain:
  == domain 1    score: 143.4 bits;  conditional E-value: 4.5e-45
    TIGR03251  21 ldleksrGsvlvdardGrryldlfsffassalGmnhPaladdaefrerlaavavn.kpsnsdvytvemarfvdtfarvlvdpalPhlffieGGalavenalktafdwksrkneargieaelGtkvlhlrqafhGrsGytlsltntdPrktarfPkfdwPridaPkltfpldaeeldavkaleeealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGilagrrvdevadnvfk.vssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvsnprGrGllcafdlpstelrdelvkaly....rekvlvlgaGekairfrpaltvseeeidealdairrvl 432
                  + l++ +G+++ d  +Gr+yld+ s +++   G+ hP++  da ++ + +++++  ++   dv+   +a++         d  lP    +e G  a++ a + a+d k       g++ +   kv+  ++ f Grs  ++s   +dP+  + f  f    ++ P+            ++ale+e           ++ + a++++ePiqge G       +l+a + lc++++all+ devqtG+G tGk    ++ +vkPd++++Gk    +G++    v   ++ +++ +++   st+GGn      a   le++eee l ++a++qGe ll+ l+   ae  k v+ +rGrGll a+ l ++e+   l+ ++     ++++l  ++  + ir+ p+l ++++++de++d+i rvl
  MMETSP1174-20130828|17638_1  34 VVLTRGKGVHVWDV-EGRQYLDFLSAYSAVNQGHSHPKI-LDALVK-QASKLTLTsRAFHNDVL-GPYAEYTT--RLFGYDRILPMNTGVEAGETAIKLARRWAYDVK-------GVP-DGKAKVIFAEGNFWGRSMAAISS-SSDPTSYKGFGPFMPGFVQVPYND----------LAALEQE----------LRDPNCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVKPDMLVLGKAL-SGGVVPVSAVLGSDEIILTvKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGLQ---AEEVKCVESVRGRGLLNAIVLDESEKDGTLAWDMCvalkEAGLLAKPTHGNIIRLAPPLCITSAQVDESVDIISRVL 412
                  45789999999996.7**********************9.455444.45555555055566776.68999854..446789999*98888888777777777777766.......443.44579*************99995.57*******998865555555433..........3344432..........356789*******************************************************************965.4666655555444444444157899*************************************98876...455569****************999988877655433327889999*****************************98 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.9e-05    0.0098      29      95 ..      20      87 ..       3     132 .. 0.77
   2 !   70.8   0.0   5.8e-23     2e-20     247     462 ..     192     410 ..     183     412 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-05
    TIGR00699 29 lnevfdvravk.fladyekslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinr 95
                 l+e ++++  + +++  ++  G ++ dv+G ++ld  +  +++  G+ +P++l +  ++    +l  r
  MMETSP1174-20130828|17638_1 20 LEEKYNAHNYHpLPVVLTRGKGVHVWDVEGRQYLDFLSAYSAVNQGHSHPKILDALVKQASKLTLTSR 87
                 555555555443567788999*****************************998876555555555444 PP

  == domain 2    score: 70.8 bits;  conditional E-value: 5.8e-23
    TIGR00699 247 kyrkp.vaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqtaG.....yffhdealrPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawdtpd..eakrdklllklklkGvniGGcgvkavrlrPslvfqkhhadillealek 462
                  + r p  a+ +vePiq e G    sd +++  +d+ k++n + i devqtG G tGk  + +h n++  +d++ + k l  +      +   de +   kp  +  t+ G+P    ++ + +e +++++l en++  G+ l++gl   +++  + ++ +rg+G    i  d  +  ++    +++ lk  G+    +  + +rl P l       d  ++++++
  MMETSP1174-20130828|17638_1 192 ELRDPnCAGFMVEPIQGEAGVVVPSDGYLKAAHDLCKRYNALLIADEVQTGLGRTGKRLCSDHDNVK--PDMLVLGKALSGGVvpvsaVLGSDEIILTVKPGEHGSTYGGNPLGCAVAMAALEVLEEESLAENASVQGERLLKGL---QAEEVKCVESVRGRGLLNAIVLDESEkdGTLAWDMCVALKEAGLLAKPTHGNIIRLAPPLCITSAQVDESVDIISR 410
                  555555799*******************************************************997..699998877654321111134567777889******************************************9886...6677778999**8888888888865411445667999**********************99988877777766665 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.3e-05     0.018     152     285 ..     184     314 ..     180     345 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.3e-05
    TIGR01822 152 adledleaklkearaagarlrliatd.G.vfsmdGtiapldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGGftt..akkevvellrqrsrpylf.snslapavvgasikvl 285
                  +dl+ le++l++ + ag   + i  + G v   dG    l+   +l+++y+al++ de   tG lG   r  + l+   d+v+     lGkal G +   ++  +  e++  ++       +  n l  av  a+++vl
  MMETSP1174-20130828|17638_1 184 NDLAALEQELRDPNCAGFMVEPIQGEaGvVVPSDGY---LKAAHDLCKRYNALLIADEVQ-TG-LG---RTGKRLCSDHDNVKPDMLVLGKALSGGVVPVSAvlGSDEIILTVKPGEHGSTYgGNPLGCAVAMAALEVL 314
                  688888888888888888888777652423455665...6788899************86.45.45...5556788888999999999*****8876554432255666666655444433314555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1217.23
//
Query:       MMETSP1174-20130828|17644_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 730.06
//
Query:       MMETSP1174-20130828|17649_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|17650_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|17652_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 383.59
//
Query:       MMETSP1174-20130828|17651_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-11   41.5   1.6    4.5e-11   40.7   1.1    1.4  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   1.1   1.1e-14   4.5e-11       5      56 ..       7      52 ..       4      53 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 1.1e-14
    TIGR01557  5 vWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrlk 56
                 +W +e+h+rFlq+++ +G+ ++    ++++ ++ ++ T  qv+SH+Qky++k
  MMETSP1174-20130828|17651_1  7 RWLQEEHERFLQGLKVFGK-KW---TRVAQ-VVQTR-TTVQVRSHAQKYFQK 52
                 7******************.**...9**54.45555.79***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.50
# Mc/sec: 770.82
//
Query:       MMETSP1174-20130828|17653_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 252.98
//
Query:       MMETSP1174-20130828|17656_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|17657_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 499.96
//
Query:       MMETSP1174-20130828|17661_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|17662_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 267.75
//
Query:       MMETSP1174-20130828|17664_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.029   11.5   0.0    1.1  1  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-06     0.029     197     223 ..      26      52 ..      18      56 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7e-06
    TIGR02740 197 rygievlpvSvDGkplpggkfpnvrvd 223
                    g++v+pv +DG+  +g +fp+v  d
  MMETSP1174-20130828|17664_1  26 AAGVNVVPVRMDGAQWDGRNFPDVTAD 52 
                  569********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 285.38
//
Query:       MMETSP1174-20130828|17663_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.63
# Mc/sec: 680.90
//
Query:       MMETSP1174-20130828|17660_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.2   0.2     0.0039   14.4   0.0    2.5  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    2.5e-06   23.5   0.1    3.6e-06   22.9   0.1    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.8e-05   20.7   0.2    4.2e-05   20.2   0.2    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00028   18.5   0.0    0.00057   17.5   0.0    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00045   17.7   2.1       0.31    8.4   0.1    2.9  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0014   14.8   0.0      0.002   14.2   0.0    1.1  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   3.2e-05     0.022       9     104 ..     335     438 ..     327     451 .. 0.67
   2 ?   -2.1   0.0      0.61   4.2e+02     162     194 ..     470     502 ..     454     542 .. 0.80
   3 !   14.4   0.0   5.8e-06    0.0039     201     254 ..     604     658 ..     555     668 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.2e-05
    TIGR03896   9 esreiaaettLieeGkaaddLfilldGaitvtikqeedd.al.trav.....elaeLsrGelvGemsll.eerppvatikaveksrllsipveeLaaklqsdva 104
                  +  + +++ +L  +G  a+ Lfi+ dG ++v+ +q++++ al ++a        ++  +  + G+  +   +r   a   a+e+ ++l ++++++ ++   ++ 
  MMETSP1174-20130828|17660_1 335 RCVAFKKGEMLYGDGDEAESLFIVFDGIVSVQSAQDTKQlALmNDAGeltadATSKYGVHSVFGDGLISsSDRTRTAEAVAKEDTLVLVLRYDDFLSVTSAQTQ 438
                  334556788999**********************9987623313344444333334445566676433225788899999999999999999998877655443 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.61
    TIGR03896 162 kkkklsagtvlikegeavdaLYilLaGeaelsi 194
                      ++a  v++  ge++  L i+ +G +++  
  MMETSP1174-20130828|17660_1 470 ALTSFPAHGVILSQGEKMTDLCIVRYGIIQVFK 502
                  556778999999999999999999999888765 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 5.8e-06
    TIGR03896 201 revgssrrGeilGelsflnsdlaatatvkavealvlLaidkeela.akLqaDval 254
                    vg +  Ge+ Gel++l++   +t+t  a ++++++++ ++ l  ak + D +l
  MMETSP1174-20130828|17660_1 604 VLVGVLGNGELYGELAVLDPTRLSTSTLMAYTDVEVMVLSRDILVqAKANFDANL 658
                  5689999**********************************98751466666655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   5.3e-09   3.6e-06     468     546 ..     151     229 ..     146     239 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 5.3e-09
    TIGR02917 468 ynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaark 546
                  +  ++++y+  ++++ A e +   L+++p++ pA +n   l+++ +++d A + +++++  dpkn +   + a++  ++
  MMETSP1174-20130828|17660_1 151 HFDRAYAYQRLRKISPAIEDYSRGLELNPNYGPAYFNRSALHVASNDVDLALADLDEAISQDPKNRAYYHNRASVMRKT 229
                  56689************************************************************98877777776555 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   6.1e-08   4.2e-05     348     424 ..     165     241 ..     143     247 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6.1e-08
    TIGR00990 348 eealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydk 424
                    a +d s+ +el+P+   +y +r+ + +  +d d a  d+d+a+ +d+++   y+ ra +    + f e+  d  k
  MMETSP1174-20130828|17660_1 165 SPAIEDYSRGLELNPNYGPAYFNRSALHVASNDVDLALADLDEAISQDPKNRAYYHNRASVMRKTDRFMESIDDIVK 241
                  5799***********************************************99888899887777777777666655 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.3e-07   0.00057      59     133 ..     155     227 ..     149     229 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8.3e-07
    TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                  a ++q+l + + Ai+ Y++ + l+++   +++ ++  ++a ++   Al++L+ ai  + +++  + +++ra+ m 
  MMETSP1174-20130828|17660_1 155 AYAYQRLRKISPAIEDYSRGLELNPNYGPAYFNRSALHVASNDVDLALADLDEAISQDPKNR--AYYHNRASVMR 227
                  7789***************************************************9999999..66888888876 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00082      0.56      68     102 ..     151     185 ..     143     188 .. 0.88
   2 !    8.4   0.1   0.00045      0.31      43      78 ..     194     229 ..     189     235 .. 0.89
   3 ?   -2.4   0.0      0.87   5.9e+02     142     176 ..     646     680 ..     639     690 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00082
    TIGR02521  68 nlalAlyyqqlgelekAeesfrkAltlkpnngdvl 102
                  +  +A++yq+l++ + A e + ++l+l+pn g ++
  MMETSP1174-20130828|17660_1 151 HFDRAYAYQRLRKISPAIEDYSRGLELNPNYGPAY 185
                  5568**************************88665 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00045
    TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqql 78 
                  +++d++ A ++l++A+ +dpk+   ++ +A +  ++
  MMETSP1174-20130828|17660_1 194 ASNDVDLALADLDEAISQDPKNRAYYHNRASVMRKT 229
                  67899*************************998775 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.87
    TIGR02521 142 glcalkagdtekaekyltralkidpkrpesllela 176
                  +l+++ka+ +++ +++l+++l     +p++l  + 
  MMETSP1174-20130828|17660_1 646 ILVQAKANFDANLRTTLEKSLMFHSPNPNKLAHMM 680
                  57788999999999999999999999999888776 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-06     0.002     364     447 ..     154     234 ..     144     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3e-06
    TIGR03939 364 eAqalldkllestPpqvwdfgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprr 447
                   A  ++ + l++ +p + d+ r   + N++y  a   +  l+++s+d++ A + l+e+ ++ P N     ++a+v r  +++ +
  MMETSP1174-20130828|17660_1 154 RA--YAYQRLRKISPAIEDYSR-GLELNPNYGPAYFNRSALHVASNDVDLALADLDEAISQDPKNRAYYHNRASVMRKTDRFME 234
                  44..455567778899****99.7889************************************************998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.45
# Mc/sec: 2050.23
//
Query:       MMETSP1174-20130828|17669_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|17671_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1784.13
//
Query:       MMETSP1174-20130828|17674_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|17677_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 684.69
//
Query:       MMETSP1174-20130828|17684_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|17689_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|17685_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1632.89
//
Query:       MMETSP1174-20130828|17688_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1174-20130828|17691_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|17690_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 861.60
//
Query:       MMETSP1174-20130828|17692_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.51
# Mc/sec: 804.87
//
Query:       MMETSP1174-20130828|17695_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.0   0.4       0.41    7.7   0.0    1.9  2  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family


Domain annotation for each model (and alignments):
>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1    0.0063        26     112     131 ..       7      26 ..       2      33 .. 0.82
   2 ?    7.7   0.0   9.9e-05      0.41      55      98 ..      35      78 ..      29      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0063
    TIGR02700 112 tnavaqagkGrvkvlvvpvd 131
                  ++a a a  G v+v+vv v 
  MMETSP1174-20130828|17695_1   7 ADAAAGALHGCVPVMVVVVG 26 
                  67889999********9886 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 9.9e-05
    TIGR02700 55 eisnGdyyeevfleseegasspivGrlalgkydllivspatant 98
                 ++++ +   e++ e e++  s ++  + + +yd li+  +t+ t
  MMETSP1174-20130828|17695_1 35 DVTEQNMTAELVGEVEKSLLSAKLLLVVVKRYDELIIIASTTTT 78
                 567788999**************************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 500.46
//
Query:       MMETSP1174-20130828|17696_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 425.77
//
Query:       MMETSP1174-20130828|17697_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1174-20130828|17698_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 551.95
//
Query:       MMETSP1174-20130828|17701_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 207.88
//
Query:       MMETSP1174-20130828|17699_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.64
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|17703_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|17709_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 731.60
//
Query:       MMETSP1174-20130828|17710_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 206.59
//
Query:       MMETSP1174-20130828|17711_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|17716_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.63
# Mc/sec: 106.85
//
Query:       MMETSP1174-20130828|17718_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.9   0.6       0.02   11.9   0.4    1.0  1  TIGR00762 DegV: EDD domain protein, DegV family


Domain annotation for each model (and alignments):
>> TIGR00762  DegV: EDD domain protein, DegV family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   4.9e-06      0.02      37      70 ..       8      41 ..       2      52 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-06
    TIGR00762 37 dgvditpeefyeklkeskelpkTSqpspgeflev 70
                 ++++ ++e f+++l+++++ pkTS  +++e +++
  MMETSP1174-20130828|17718_1  8 EEEHEEKEAFVQQLAKQEAAPKTSEQNVAEEDDT 41
                 5567799******************999986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|17720_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|17724_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|17726_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|17723_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 1403.48
//
Query:       MMETSP1174-20130828|17732_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|17727_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1950.03
//
Query:       MMETSP1174-20130828|17731_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 769.31
//
Query:       MMETSP1174-20130828|17736_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   12.4   0.0      0.014   12.0   0.0    1.1  1  TIGR01798 cit_synth_I: citrate (Si)-synthase
  ------ inclusion threshold ------
      0.023   11.9   2.9      0.014   12.7   0.7    1.5  2  TIGR01884 cas_HTH: CRISPR locus-related DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.6e-06     0.014      38     107 ..      43     110 ..      23     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-06
    TIGR01798  38 stasceskitfidgdkgvllyrgypidqlaeksdylevcylllkgelptkeqkeefdekvkehtmvheql 107
                     s + +itf   +kgvl       +q+a+k   l+v  +++++e+ ++ +   +++ +k+ht +++q 
  MMETSP1174-20130828|17736_1  43 NELSQQNRITFNKMEKGVLFK--LVDEQIAQKLAGLNVEVMMVYEEIKSSGNSGIWNRDIKTHTNIQQQT 110
                  5567899***********986..5679***************************************9984 PP

>> TIGR01884  cas_HTH: CRISPR locus-related DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   6.6e-06     0.014     129     191 ..      65     129 ..      46     139 .. 0.85
   2 ?   -3.1   0.0      0.45   9.3e+02      57      83 ..     170     197 ..     165     201 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.6e-06
    TIGR01884 129 eelelvpllaklsreelkvLetLkaeGeksv..kniAkklgksrstisrhlreLekkglvesksr 191
                   ++++  +la+l+ e + v e++k+ G   +  ++i  ++++ ++t+ + l+eLe   l++s++ 
  MMETSP1174-20130828|17736_1  65 VDEQIAQKLAGLNVEVMMVYEEIKSSGNSGIwnRDIKTHTNIQQQTLTKALKELERRMLIKSVKS 129
                  567788899****************9998875589**************************9975 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.45
    TIGR01884  57 klvevetkeielkdv.ekvvrkvsdiik 83 
                   lve ++ke +l+ + +  +++v d +k
  MMETSP1174-20130828|17736_1 170 RLVENQIKEAWLEHSkPTSMQQVDDQVK 197
                  4677788888888777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1174-20130828|17737_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 765.54
//
Query:       MMETSP1174-20130828|17744_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|17746_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|17742_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1315.63
//
Query:       MMETSP1174-20130828|17751_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 742.44
//
Query:       MMETSP1174-20130828|17753_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|17756_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.75    5.9   9.0       0.88    5.7   6.3    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
        2.7    4.2   8.5        2.8    4.1   5.9    1.1  1  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3   0.00043      0.88     232     322 ..      10     100 ..       2     114 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00043
    TIGR03591 232 elkkkveelaeekelkealkieekqereealeevkeevleelaeeeeeee.eeeeekeikellkelekklvRerilkekkRidgRklkeiRp 322
                  +++ + +e++ee+  +e  +  e+ + +e+  +++++  +el +e e+++ +e+e   ++++ +el+++++R++++++k Ri+  + +++R+
  MMETSP1174-20130828|17756_1  10 DIEMTHHEELEEQ-NSELRNELERAKVSEEKFQFEQASNKELRSELERSKvAENEFFVLQSANTELRSEILRSKVTENKLRIEQAANNDLRS 100
                  3333344444422.22222223344444444445555555555555553303444556789999*******************999999996 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.9    0.0014       2.8     437     523 ..      36     123 ..       6     124 .] 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0014
    TIGR00831 437 veerlaveedvakellkele.ervvelradgeekvesdlaeknlerrvrlavldakraavvdlratrlisdevlrellrelDlkeaeL 523
                   ee+ + e+  +kel  ele ++v e      ++++++l ++ l+ +v    l+ ++aa  dlr++ + s+e++ + ++e++  + eL
  MMETSP1174-20130828|17756_1  36 SEEKFQFEQASNKELRSELErSKVAENEFFVLQSANTELRSEILRSKVTENKLRIEQAANNDLRSELERSKEIASKHQHEVEADNSEL 123
                  3455667778889999999845677788888999**********************************************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 511.46
//
Query:       MMETSP1174-20130828|17757_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|17750_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1685.69
//
Query:       MMETSP1174-20130828|17759_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1174-20130828|17770_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 578.42
//
Query:       MMETSP1174-20130828|17772_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 559.95
//
Query:       MMETSP1174-20130828|17775_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 543.96
//
Query:       MMETSP1174-20130828|17773_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1732.36
//
Query:       MMETSP1174-20130828|17777_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|17776_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1115.08
//
Query:       MMETSP1174-20130828|17781_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 654.87
//
Query:       MMETSP1174-20130828|17783_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.9   0.2      0.019   11.5   0.1    1.1  1  TIGR03487 cas_csp2: CRISPR-associated protein Cas8c/Csp2, subtype PGING


Domain annotation for each model (and alignments):
>> TIGR03487  cas_csp2: CRISPR-associated protein Cas8c/Csp2, subtype PGING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.6e-06     0.019     373     417 ..      92     137 ..      87     154 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.6e-06
    TIGR03487 373 ldaevvasarilgkwl.nlvayfaakeevresannifeeirkvkak 417
                   +ae +   + l  w  n v yf ++ee+r+ a+++ eeir    k
  MMETSP1174-20130828|17783_1  92 RQAETIMFHNNLSCWEdNVVKYFLSREEARKFAKEFLEEIRTKWYK 137
                  567888888999999647889******************9865443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.57
# Mc/sec: 471.06
//
Query:       MMETSP1174-20130828|17782_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 693.79
//
Query:       MMETSP1174-20130828|17785_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 604.95
//
Query:       MMETSP1174-20130828|17790_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 183.64
//
Query:       MMETSP1174-20130828|17792_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|17793_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1174-20130828|17795_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 426.66
//
Query:       MMETSP1174-20130828|17791_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-20   69.1   1.3    1.5e-19   68.4   0.9    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    5.1e-14   49.4   1.2    7.9e-14   48.8   0.9    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.9   7.3e-23   1.5e-19       2      78 ..      17      98 ..      16     117 .. 0.79

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 7.3e-23
    TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfghagleggagggg 78
                 +Ye+L+++++As++eikkA+rk+   yHPD+ ++      ++ +e  ++ ++AyevL+deekr  YD +g +g++ ++ +++
  MMETSP1174-20130828|17791_1 17 FYEVLEIDRHASKAEIKKAFRKKMLVYHPDKRAHrgeenTAKDQEITQQLQQAYEVLQDEEKRMWYDTLGINGINFKENRSE 98
                 9*****************************9876544323334455677899********************9998655533 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.9   3.8e-17   7.9e-14       3      72 ..      16      91 ..      14     102 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 3.8e-17
    TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDr......nkaadaakifaeineandvLsnPkkraryDkyGhDGvD 72
                  +yevL+idr a + eikkafrk    yhPD+       + a  ++i + +  a++vL + +kr  yD  G +G++
  MMETSP1174-20130828|17791_1 16 AFYEVLEIDRHASKAEIKKAFRKKMLVYHPDKrahrgeENTAKDQEITQQLQQAYEVLQDEEKRMWYDTLGINGIN 91
                 59*****************************733332223466678****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1361.44
//
Query:       MMETSP1174-20130828|17801_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1174-20130828|17799_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-31  106.9   0.2    1.4e-30  104.4   0.9    1.6  2  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
      8e-24   81.7   4.7    1.1e-23   81.3   3.3    1.0  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.25   5.1e+02     120     154 ..      25      62 ..      21      71 .. 0.77
   2 !  104.4   0.9   6.7e-34   1.4e-30      33     201 ..     224     392 ..     198     397 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.25
    TIGR00706 120 aiksGeyKdilsdtr...elteeekeilqslvnesyeq 154
                  a++ G++K++l+++     l ++e ++  +lvn +y+ 
  MMETSP1174-20130828|17799_1  25 AMRPGAFKQLLAPFAgglGLPPQEPHFTFKLVNSEYDC 62 
                  67889999999998633357889999999999999986 PP

  == domain 2    score: 104.4 bits;  conditional E-value: 6.7e-34
    TIGR00706  33 kalvlkidSPGGtvvaseeiyeklkklk.akkpvvasvgnvaaSGgyyialaadeivanegtlvGSiGVilesvnveklleklGieveaiksGeyKdilsdtrelteeekeilqslvnesyeqFvevvakgRnlsveevkklAdGrvftgrqalklkLvDklgslddale 201
                    ++  + S GGtv       ++l +l  a +p+ + v ++a SGgy++a+ a++iv ++ +  GSiGVi + +nv+k ++klG+e+ +ik+G +K +   + e+t+e  ++ q+++n+ +  F   +a++R   + ++ ++AdG v+ g++a++ +L D + + d  +e
  MMETSP1174-20130828|17799_1 224 DEVLCLVTSRGGTVDGYGFAASQLSRLRqAGIPLTVCVDKCAVSGGYMMASVANKIVVSDFAYLGSIGVIATVINVNKAIKKLGMEAVTIKAGTHKSTIDAFNEITKEGAQAHQAMINQVHTAFKAHIARYRP-GIPDLESVADGTVWLGQDAVEKGLADVVMTSDGYIE 392
                  3578899********************9789*****************************************************************************************************7.67799*********************9998887666 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   3.3   5.1e-27   1.1e-23     324     511 ..     200     384 ..     187     408 .. 0.93

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 5.1e-27
    TIGR00705 324 dgreteenvggDtvaallrkarsDddvkAvvLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgYWiasaadyivAdpntitGsiGvfsvlptvenlldriGvhvDevstselanv.sllrplteeeqaimqlsveagYerFlevvskaRnlskeqvdkvAqGrvwtGedAkkvGLvDel 511
                  d++ t  n     v+ +l++a s d+v  +   v s GG v        +l +l++aG P  v +   A sGgY +as a++iv +     GsiGv++ + +v++ ++++G+++  ++ +  + +  +++  t+e  +  q  ++++   F   +++ R   ++ +++vA+G vw+G+dA++ GL D +
  MMETSP1174-20130828|17799_1 200 DKEATAVNFLRQAVSCILKVATSKDEVLCL---VTSRGGTVDGYGFAASQLSRLRQAGIPLTVCVDKCAVSGGYMMASVANKIVVSDFAYLGSIGVIATVINVNKAIKKLGMEAVTIKAGTHKSTiDAFNEITKEGAQAHQAMINQVHTAFKAHIARYRPGIPD-LESVADGTVWLGQDAVEKGLADVV 384
                  567788888889999999999999997655...68**********************************************************************************9999988889********************************98886.9*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 1291.20
//
Query:       MMETSP1174-20130828|17809_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 269.48
//
Query:       MMETSP1174-20130828|17810_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1174-20130828|17815_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   15.7   2.1     0.0032   15.7   1.5    1.7  2  TIGR01566 ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain


Domain annotation for each model (and alignments):
>> TIGR01566  ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.5   7.8e-07    0.0032      10      51 ..       8      51 ..       4      53 .. 0.82
   2 ?   -2.6   0.6      0.41   1.7e+03      10      26 ..      81      97 ..      80     103 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.8e-07
    TIGR01566 10 AasiGghalD..GCGEFmpssgeegdvesLtCaACgCHRnFHRk 51
                 A s+Gg  +D  G G   +ss+ +++++s+   A gC  nFHR 
  MMETSP1174-20130828|17815_1  8 AGSSGGGSIDerGGGASSSSSAASSSLDSIVYCALGCGFNFHRT 51
                 7789999999555566666666999******99**********6 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.41
    TIGR01566 10 AasiGghalDGCGEFmp 26
                 Aa+ Gg    G G + p
  MMETSP1174-20130828|17815_1 81 AAGGGGYGSGGSGGYEP 97
                 66677777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 468.35
//
Query:       MMETSP1174-20130828|17813_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1440.15
//
Query:       MMETSP1174-20130828|17817_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.6   0.1      0.022   10.6   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.3e-06     0.022     126     158 ..      12      45 ..       4      49 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.3e-06
    TIGR00870 126 seftkgitalilAihkqnyeivklLl.ekgasve 158
                   +  +g t+l++A+ k n+ +v+ L  e  a+v+
  MMETSP1174-20130828|17817_1  12 ASTGNGTTPLHMAALKGNLDVVQYLAgEAHADVN 45 
                  556689*****************99634456665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 131.99
//
Query:       MMETSP1174-20130828|17819_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 643.85
//
Query:       MMETSP1174-20130828|17827_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|17829_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0053   13.7   0.0     0.0067   13.3   0.0    1.0  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.6e-06    0.0067     196     301 ..      52     153 ..      41     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-06
    TIGR00883 196 fekekekkkkearkkriplaevltkkrkelllvlglviatsvlfYllttylasYlkktak.lglsaesallvlllalillllviplsgllsdriGrrkvlilltvla 301
                        k++k++ ++++ ++ ++ + ++++l+++++ i+ + l+Y + ++  ++ +k+     ++ +sa ++   +  +++  i+lsg+ +d +G  + l+++t++a
  MMETSP1174-20130828|17829_1  52 SG----KEDKTSSESDVGASRTCVHSFAKFLIIVFI-IVVAFLIYKVAIFELHHGNKSSPpTLMPTSSAPTAFPTTIDTVITEIALSGFSCDEFGDTEALVFVTAVA 153
                  22....233334457889999999999777776665.55667789999999999988765456777777777666666777789**************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 603.38
//
Query:       MMETSP1174-20130828|17824_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-10   35.2   0.0    9.6e-10   34.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00045   17.6   0.3     0.0011   16.3   0.2    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0052   13.2   0.0     0.0094   12.4   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
      0.063   11.6   3.3       0.14   10.5   2.3    1.5  1  TIGR02420 dksA: RNA polymerase-binding protein DksA


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   9.3e-13   9.6e-10      78     181 ..      20     120 ..       9     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 9.3e-13
    TIGR03903  78 aaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh....akvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeq.LRgepvtaksDlYaWGLivle 181
                   ++t ++ + + +al + h+ G  hRD+k +ni+v +  ++s+     +++DFGi+  l +            +e+ G+P + aPe  LR     +k D+++ G ++le
  MMETSP1174-20130828|17824_1  20 DKNTMKVSTAIREALQHVHSLGYAHRDVKSENILVRTDSEKSTvitdVRLIDFGIACRLDDDVS--------RHELCGTPGFIAPETvLRQVEDASKVDVWSLGCVILE 120
                  578999999999***********************887666542222689*****998876433........69************75899999**************9 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   1.1e-06    0.0011      88     138 ..      19      77 ..      10      85 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.1e-06
    TIGR03724  88 leekelellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGLgkk 138
                   +++++++ +++ e++ ++H+ g +h D+  +Ni+v+         +++ liDfG++ +
  MMETSP1174-20130828|17824_1  19 HDKNTMKVSTAIREALQHVHSLGYAHRDVKSENILVRtdsekstvITDVRLIDFGIACR 77 
                  4455569999**************************75554433334677999999865 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   9.2e-06    0.0094     263     309 ..      28      81 ..       7      94 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.2e-06
    TIGR01982 263 nlvesflkqvlrdgfFHaDlHpGNilvakd.......gkiialDfGivgrlsee 309
                  + ++  l++v   g+ H D+   Nilv++d         + ++DfGi  rl+++
  MMETSP1174-20130828|17824_1  28 TAIREALQHVHSLGYAHRDVKSENILVRTDsekstviTDVRLIDFGIACRLDDD 81 
                  46788899*********************9999888888999*********976 PP

>> TIGR02420  dksA: RNA polymerase-binding protein DksA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3   0.00014      0.14      13      96 ..     313     398 ..     306     404 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
    TIGR02420  13 Leewkqelleeaektleelk.eeseefaDeadrAtqEeeralelrtrdRerkLlkKidealkrieegeyGfCee.cgeeiglkRLe 96 
                  +e+++ e+l++ +k  +++  e s+++aD +d  t+E+e +  +r +d  +kL ++   +l+r  +    +C++  +e++ ++RL+
  MMETSP1174-20130828|17824_1 313 IEDENIEILSDWKKANQQVAvEVSSRVADGSDDRTEENEAKKMMRLQDERKKLSRREGVSLNRRANXVQDLCDNlKDEDVDMERLR 398
                  55666677778777777765256899*****************************************99***99567889999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1421.42
//
Query:       MMETSP1174-20130828|17828_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 828.77
//
Query:       MMETSP1174-20130828|17826_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-24   83.4   2.4    5.2e-12   43.5   0.0    2.4  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      3e-19   67.2   4.4    3.2e-12   44.0   1.6    3.7  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.2e-15   53.4   8.8    5.4e-09   32.9   0.1    2.9  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      2e-14   51.1   1.2    3.9e-08   30.3   0.1    2.3  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      2e-14   51.7   0.1    1.1e-07   29.6   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.5e-12   44.1   0.2    8.1e-12   43.2   0.1    1.4  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    5.9e-12   43.0   0.1    7.5e-06   22.8   0.0    2.3  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
  ------ inclusion threshold ------
      0.013   13.3   0.1      0.021   12.6   0.1    1.3  1  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.5e-13   7.5e-11      96     155 ..      31      92 ..      21     106 .. 0.76
   2 !   43.5   0.0     1e-14   5.2e-12     285     357 ..     120     193 ..     109     238 .. 0.86
   3 ?   -3.9   0.3       2.2   1.1e+03     520     532 ..     455     467 ..     424     477 .. 0.43

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.5e-13
    TIGR01628  96 LdksidnkaLfdtFskfGnilsckvat..deeGkSkgYgfvhfedeesAkeAieklNgvlln 155
                   +   d++ L+d+ ++fG+i sc v+     +G+S+gYgfv f +e+s ++Ai kl    ++
  MMETSP1174-20130828|17826_1  31 FPVGTDSEKLQDMCEEFGKIYSCTVVGfdPATGNSRGYGFVTFAEEDSCTAAIAKLHKSTVE 92 
                  55667888999999999999999998521468999999999999999999999998766555 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 1e-14
    TIGR01628 285 gvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilng.kPLy 357
                   + + v  +  + ddekL+ + eefG +  a+v++++ +kSkgFGFV+f+++++   Av +l+ ++l+g + L 
  MMETSP1174-20130828|17826_1 120 ANKIIVAGITSSTDDEKLKIMCEEFGLVLRAQVVRNAVGKSKGFGFVTFTNKSAQRTAVLKLNKRMLGGgRILN 193
                  4557778888999******************************************************8614454 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 2.2
    TIGR01628 520 nkestltaaalas 532
                   ++s++  + l+s
  MMETSP1174-20130828|17826_1 455 ARQSQKRDQDLQS 467
                  1111111111111 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.4e-11   2.3e-08     234     300 ..      38     106 ..      28     114 .. 0.88
   2 !   44.0   1.6   6.3e-15   3.2e-12     214     344 ..     115     244 ..     109     260 .. 0.83
   3 ?   -1.5   1.4      0.39     2e+02      70     119 ..     349     395 ..     324     406 .. 0.51
   4 ?   -3.3   2.6       1.4   7.3e+02      23      57 ..     451     473 ..     434     481 .. 0.35

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.4e-11
    TIGR01622 234 qeLrqiFepFGeielvql.qkDpetGrskGyGFiqFsdaeeakeAleklNGlel.AGReikvglasDvt 300
                  ++L+++ e FG+i +  +   Dp tG s+GyGF++F + +   +A+ kl    +  GR + v l++D t
  MMETSP1174-20130828|17826_1  38 EKLQDMCEEFGKIYSCTVvGFDPATGNSRGYGFVTFAEEDSCTAAIAKLHKSTVeGGRVLNVRLVEDDT 106
                  689**********99886268****************************99777357999999999966 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 6.3e-15
    TIGR01622 214 pnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG.lelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekg 344
                   ns    k+ v ++ ++  +++L+ + e FG ++  q+ ++  + +skG+GF++F++ +  + A  klN  +   GR + v   +D ++++  + ++k + + ++++ s++++++ + e  + k + d++  
  MMETSP1174-20130828|17826_1 115 GNSKDANKIIVAGITSSTDDEKLKIMCEEFGLVLRAQVVRNAVG-KSKGFGFVTFTNKSAQRTAVLKLNKrMLGGGRILNVRALDDKKPQTGEEDLNKDAAD-KGQKASAVGGGGGSPESKEGKEASDGKSK 244
                  4677899********************************98765.*************************77778999*****9999988877666666654.77888888888877777777777775544 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.39
    TIGR01622  70 reserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDa 119
                  +es+ er+r+k    ++ +   +k+r++   +    er+k +lteee ++
  MMETSP1174-20130828|17826_1 349 EESGSERKRKKG---GKASGGSKKRRGESDGVVGSTERTKAKLTEEESND 395
                  333333333332...12222222333333333333578888887776533 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 1.4
    TIGR01622  23 rdksrersRdrsrdRersrskerdrdfdrrdrdrd 57 
                  + ++  +            s++rd+d + + + ++
  MMETSP1174-20130828|17826_1 451 KKAEARQ------------SQKRDQDLQSKTQSKE 473
                  1111111............1112222222111111 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.1e-09   1.1e-06     298     371 ..      25     100 ..      17     106 .. 0.89
   2 !   32.9   0.1   1.1e-11   5.4e-09     287     381 ..     111     204 ..      99     224 .. 0.84
   3 ?   -4.0   2.4       1.6   8.1e+02      71      96 ..     452     476 ..     433     480 .. 0.44

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.1e-09
    TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliK.dlatGlsKGyaFceykdssvtdlAiaaLnG.iklgdkkLnvk 371
                  k+ + + P   + ++++++ e+FG + +  ++  d atG+s+Gy+F+ + +      Aia L    + g++ Lnv+
  MMETSP1174-20130828|17826_1  25 KIIVIGFPVGTDSEKLQDMCEEFGKIYSCTVVGfDPATGNSRGYGFVTFAEEDSCTAAIAKLHKsTVEGGRVLNVR 100
                  889999**************************66***************99999999****975155688889987 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.1e-11
    TIGR01642 287 vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklg.dkkLnvkrAtvgakqat 381
                   ++k+ + +++k+ + ++    +d+++k + e+FG ++  +++++ a G+sKG++F+ + + s    A+  Ln   lg +++Lnv+ A  ++k+ t
  MMETSP1174-20130828|17826_1 111 KGVKGNSKDANKIIVAGITSSTDDEKLKIMCEEFGLVLRAQVVRN-AVGKSKGFGFVTFTNKSAQRTAVLKLNKRMLGgGRILNVR-ALDDKKPQT 204
                  578999******************************9999***98.68*************************9887615677775.555555444 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 1.6
    TIGR01642  71 rrrSRdrirrrsrsssseskerrrsr 96 
                  +  +R+  ++r+++++s+++ +++sr
  MMETSP1174-20130828|17826_1 452 KAEARQS-QKRDQDLQSKTQSKENSR 476
                  2222222.333333333333333333 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   5.7e-05     215     265 ..      38      89 ..      34     102 .. 0.83
   2 !   30.3   0.1   7.6e-11   3.9e-08     188     270 ..     110     189 ..      87     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.1e-07
    TIGR01645 215 edlksvfeafGeivkckla.raptlrkhkGfGflefenlqsqseaiasmnlf 265
                  e l+ + e fG+i +c++   +p++++ +G+Gf+ f++  s   aia +   
  MMETSP1174-20130828|17826_1  38 EKLQDMCEEFGKIYSCTVVgFDPATGNSRGYGFVTFAEEDSCTAAIAKLHKS 89 
                  5678889*********986269*************************88654 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 7.6e-11
    TIGR01645 188 qpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGq 270
                  ++ +    ++a k   iva +     +e lk + e fG +++ ++ r++  +k kGfGf+ f n+ +q  a+  +n   lGG 
  MMETSP1174-20130828|17826_1 110 KKGVKGNSKDANKI--IVAGITSSTDDEKLKIMCEEFGLVLRAQVVRNAV-GKSKGFGFVTFTNKSAQRTAVLKLNKRMLGGG 189
                  55455555666666..6******************************976.568**********************9999875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-07   0.00012       6      65 ..      26      86 ..      21      99 .. 0.65
   2 !   29.6   0.0   2.1e-10   1.1e-07     270     344 ..     121     196 ..     104     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.3e-07
    TIGR01661  6 livnylPqtmtqeeirslftsiGeiescklvr.dkvtGqslGyGfvnyvreedaekavnsl 65
                 +iv  +P +   e ++ +   +G i sc +v  d  tG s GyGfv + +e+    a++ l
  MMETSP1174-20130828|17826_1 26 IIVIGFPVGTDSEKLQDMCEEFGKIYSCTVVGfDPATGNSRGYGFVTFAEEDSCTAAIAKL 86
                 5566666666667777777777777777777436777777777777777766666666554 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 2.1e-10
    TIGR01661 270 ycifvynlspdtdeavlqlf.gpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlg.nrvlqvsf 344
                    i v  +++ td+  l+++  +fG v   +++r+    k kG+gfv+ tn     +a+l ln   lg +r+l v +
  MMETSP1174-20130828|17826_1 121 NKIIVAGITSSTDDEKLKIMcEEFGLVLRAQVVRNA-VGKSKGFGFVTFTNKSAQRTAVLKLNKRMLGgGRILNVRA 196
                  5688999999***9999765268************9.99**************************997369999876 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   1.6e-14   8.1e-12     115     323 ..      31     246 ..      23     280 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.6e-14
    TIGR01659 115 lpqdmtdrelyalfrtigpintcrim.rdyktgysfgyafvdfaseadsqraikslngitvrnkr.lkvsya...rpgge.....sikdtn.lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymsklglikygeygtgnggvaggsaanlpqppafmgannmv 323
                  +p      +l  +    g i +c ++  d  tg s gy+fv fa e  +  ai +l   tv   r l v        gg+     + kd+n + v+ ++ +  d++l+ +   +g +++ +++r+   gk +g  fv f  +   + a+  ln  +  gg + l vr  +++    ++  + k  + ++g++ + ++g++ggs+ + +  +a  g ++ v
  MMETSP1174-20130828|17826_1  31 FPVGTDSEKLQDMCEEFGKIYSCTVVgFDPATGNSRGYGFVTFAEEDSCTAAIAKLHKSTVEGGRvLNVRLVeddTGGGKkgvkgNSKDANkIIVAGITSSTDDEKLKIMCEEFGLVLRAQVVRN-AVGKSKGFGFVTFTNKSAQRTAVLKLNKRML-GGGRILNVRALDDKKPQTGEEDLNKDAA-DKGQK-ASAVGGGGGSPESKEGKEASDGKSKSV 246
                  56555666678888899******9883599****************999*******9999987763455554111344432222235788845688899999999*******************8.57*************999999*****99886.66689****9999888888888887663.33332.334444555555555555555555555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.5e-08   7.5e-06      74     133 ..      39     100 ..      24     107 .. 0.88
   2 !   17.9   0.0   4.4e-07   0.00023      72     133 ..     134     195 ..     107     201 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.5e-08
    TIGR01648  74 elvPlfekvGkiyelrlm.md.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvc 133
                   l  ++e+ Gkiy   ++  d   G+ rGy fvtf++ +    a+ +l++  +  Gr l v 
  MMETSP1174-20130828|17826_1  39 KLQDMCEEFGKIYSCTVVgFDpATGNSRGYGFVTFAEEDSCTAAIAKLHKSTVEGGRVLNVR 100
                  67789*********9876478899**********************************9985 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 4.4e-07
    TIGR01648  72 edelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvc 133
                  ++ l  ++e+ G +   +++ +  Gk +G+ fvtf+nk + + av +ln+  +  Gr l v 
  MMETSP1174-20130828|17826_1 134 DEKLKIMCEEFGLVLRAQVVRNAVGKSKGFGFVTFTNKSAQRTAVLKLNKRMLGGGRILNVR 195
                  44566789*************************************************99885 PP

>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.1e-05     0.021      18      89 ..      74     145 ..      61     185 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.1e-05
    TIGR00177  18 qieDtngallaalleeaglevkkvelgivpDdkeeikeilrkaveeadvvlttGGtGvgerDvtkealaell 89 
                   +eD++ a++a+l ++ +    ++++++v Dd    k+ ++  +++a+ +++ G t+ ++++ +k + +e++
  MMETSP1174-20130828|17826_1  74 AEEDSCTAAIAKLHKSTVEGGRVLNVRLVEDDTGGGKKGVKGNSKDANKIIVAGITSSTDDEKLKIMCEEFG 145
                  5789********9998877777799************************************99888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.47
# Mc/sec: 1381.67
//
Query:       MMETSP1174-20130828|17830_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1375.24
//
Query:       MMETSP1174-20130828|17835_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|17832_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 996.30
//
Query:       MMETSP1174-20130828|17838_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   13.6   0.4     0.0068   13.0   0.3    1.2  1  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   1.7e-06    0.0068     324     369 ..      40      85 ..      35      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-06
    TIGR03844 324 avsneeakeakklfeesegidilPaaavavaalvkaveeGlvkkdd 369
                  a + e++++a +l+  +e++  +Pa+a a+a+lv  +e+ +v++++
  MMETSP1174-20130828|17838_1  40 ATETENSNDADELLTIREEVGEDPATATAAAGLVMNLESEMVQEQA 85 
                  56788999*******************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 701.19
//
Query:       MMETSP1174-20130828|17841_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-07   26.3   0.1    1.6e-06   24.3   0.0    1.7  1  TIGR00605 rad4: DNA repair protein rad4
       0.01   11.3   0.0      0.012   11.1   0.0    1.0  1  TIGR02082 metH: methionine synthase


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.7e-10   1.6e-06     725     836 ..      14     182 ..      12     184 .] 0.81

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7.7e-10
    TIGR00605 725 kWvcvDllkgklhkklti.rknat..................kglayVfafdddqsvkDVTarYc.aswsttvrkarveka..wldet.lrpilgrltkrd...................................dteddellrihsdkplPksisdfKdHPlyvLerh 836
                  +Wv vD+  g++  ++ + ++na+                  +   yV+++d+++ + DVT+rY  a ws++v  + v  +  w+ e  l+ i  +  + +                                   + e+del      ++ P+s++ fK H    L r 
  MMETSP1174-20130828|17841_1  14 RWVSVDVTSGVVDMPDMVlIRNASlsregkksvkkrkkakkhRASVYVVGIDAEGVATDVTRRYEgARWSEVVAARGVPEQelWWWEWvLKGIRDAKEE-KlaskerasrgvvvdltgggdhhpltmppsgrevrrQCEEDELASLVAAEGTPTSLKGFKTHKSLCLARF 182
                  7999999999998776551556669999999999999998877788******************7579***9999999543235556535555443333.23666789999**********************999999**********************988888775 PP

>> TIGR02082  metH: methionine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   5.7e-06     0.012     448     506 ..      40      96 ..      23     116 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.7e-06
    TIGR02082 448 dGeerFlekaklikeyGaavvvmafDeeGqartadkkieiakRayklltekvgfppedi 506
                     ++ ++k k++k++ a+v v+ +D eG a++  ++ e a+  ++ +++  g+p++++
  MMETSP1174-20130828|17841_1  40 REGKKSVKKRKKAKKHRASVYVVGIDAEGVATDVTRRYEGAR--WSEVVAARGVPEQEL 96 
                  44456689999***************************9765..445556678888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 656.38
//
Query:       MMETSP1174-20130828|17837_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-20   70.7   0.0    3.2e-20   70.2   0.0    1.3  1  TIGR02651 RNase_Z: ribonuclease Z
    2.5e-06   24.5   0.0    3.1e-06   24.2   0.0    1.2  1  TIGR02649 true_RNase_BN: ribonuclease BN


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   1.6e-23   3.2e-20     168     291 ..      22     156 ..       2     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 1.6e-23
    TIGR02651 168 agpllkklkegeeveledgkiikpedvlgeekkgrkvayvgDTrpleevielaknadlLiheat......fae.ee....kkkAkekgHstakeAaeiakeanvkkliLtHiSaryedeeeeelleeakkifent 291
                    + +k +k   ++++ +g +++ +d +++++kgrk++++gDT    +++ la +adlLiheat      f++ +     ++   ++gHst ++A  +ak+ ++k l+L H+S+ry++ +++  + ++ +i++ +
  MMETSP1174-20130828|17837_1  22 LMKAFKMMKPTDTFRFPNGFVLEGKDAVSPARKGRKIVVCGDTCDASRLAPLAMDADLLIHEATnayvlpFDSdKTpnevRRSSIRHGHSTPEMAGAFAKSIRAKYLALNHFSPRYSGGATRAAVDTMLQIENGA 156
                  45778899999999*************************************************96655554442221111456789*******************************988777777766666544 PP

>> TIGR02649  true_RNase_BN: ribonuclease BN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.5e-09   3.1e-06     174     276 ..      26     139 ..       6     166 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.5e-09
    TIGR02649 174 fqelkagktvtledgrqingadylaaavagkalaifgdtapceaaldlakgvdvmvheat....l....dismee.kana..rghsstrqaatlareaavgkliithvssrydd 276
                  f+ +k   t  + +g  ++g d +++a  g+ + + gdt+ +     la   d+++heat    l    d + +e +  +   ghs+   a ++a+      l + h s ry  
  MMETSP1174-20130828|17837_1  26 FKMMKPTDTFRFPNGFVLEGKDAVSPARKGRKIVVCGDTCDASRLAPLAMDADLLIHEATnayvLpfdsDKTPNEvRRSSirHGHSTPEMAGAFAKSIRAKYLALNHFSPRYSG 139
                  6677888899999**************************98888899************93333122112222221222122589999999999999999999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 682.57
//
Query:       MMETSP1174-20130828|17848_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|17847_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1215.08
//
Query:       MMETSP1174-20130828|17849_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1174-20130828|17852_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 309.23
//
Query:       MMETSP1174-20130828|17850_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 619.33
//
Query:       MMETSP1174-20130828|17856_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 649.79
//
Query:       MMETSP1174-20130828|17854_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1291.35
//
Query:       MMETSP1174-20130828|17859_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-34  116.6   0.0      3e-34  116.3   0.0    1.0  1  TIGR01893 aa-his-dipept: Xaa-His dipeptidase


Domain annotation for each model (and alignments):
>> TIGR01893  aa-his-dipept: Xaa-His dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   7.3e-38     3e-34     319     477 ..      67     227 ..      57     228 .. 0.95

  Alignments for each domain:
  == domain 1    score: 116.3 bits;  conditional E-value: 7.3e-38
    TIGR01893 319 lnllpnGvqkvskelkglvesslnlavvktkenkvkvvlsvRssveskkeevtekiesvaklagae.leveaaypaWqpkkqskllevlrkvykelfg.eepevkviHAGLEcGiisekledldmislGPnikdvHspkErveissvekvydfLvkvlkkl 477
                  + l+p+Gv + s+++k+lvess ++++v+ +e+++ + + +R+sv+s + + +++++ v +laga+ +  +  + aWqp  +s ll vl++++k+l+g  +p+v +iHAGLEcG + e  +dld  s+GP+  ++Hsp+E ++i s ++  ++++ vl++l
  MMETSP1174-20130828|17859_1  67 VALVPHGVLRRSTDVKDLVESSVSFGIVELREDSLFCHVFLRTSVNSYLPYGQKMLSAVGDLAGARnVPQQNLFAAWQPAVNSALLGVLQRTHKDLYGgMDPRVYAIHAGLECGTLMETHPDLDCASIGPETANAHSPAECIHIGSSSRFVHWVKAVLETL 227
                  5689*************************************************************737788889***********************6379********************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 896.75
//
Query:       MMETSP1174-20130828|17860_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 832.26
//
Query:       MMETSP1174-20130828|17862_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 1430.24
//
Query:       MMETSP1174-20130828|17863_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 618.70
//
Query:       MMETSP1174-20130828|17865_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1174-20130828|17866_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|17869_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 477.49
//
Query:       MMETSP1174-20130828|17868_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1174-20130828|17870_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1174-20130828|17864_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 2119.16
//
Query:       MMETSP1174-20130828|17875_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 742.44
//
Query:       MMETSP1174-20130828|17876_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 936.70
//
Query:       MMETSP1174-20130828|17877_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-31  107.2   0.0    1.7e-31  107.1   0.0    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   4.1e-35   1.7e-31      86     208 ..       2     122 ..       1     130 [. 0.93

  Alignments for each domain:
  == domain 1    score: 107.1 bits;  conditional E-value: 4.1e-35
    TIGR01064  86 gekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedk..vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevlee 208
                  g +++ltt++       +++ +dy+ l ++v++G ++l+dDG+i l+Vve+++ +  v ++v+ngg++k +kgvnlpg+ ++lpal++kD+ dl+ +ve g d+vaaSF+r+ ++v++v  +le+
  MMETSP1174-20130828|17877_1   2 GTEIVLTTED----VIADEIXMDYEALGSTVSVGGTVLLDDGLIGLEVVEIDAVSgdVRTRVMNGGPIKANKGVNLPGCVLQLPALTAKDRLDLQWAVESGADAVAASFIRSGANVRSVIAHLER 122
                  6777888654....567899********************************99889*************************************************************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 696.90
//
Query:       MMETSP1174-20130828|17878_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|17872_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1350.06
//
Query:       MMETSP1174-20130828|17882_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 934.92
//
Query:       MMETSP1174-20130828|17883_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|17886_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1045.35
//
Query:       MMETSP1174-20130828|17885_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 425.77
//
Query:       MMETSP1174-20130828|17889_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1174-20130828|17888_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.4   0.0      0.034   11.8   0.0    1.2  1  TIGR02561 HrpB1_HrpK: type III secretion protein HrpB1/HrpK


Domain annotation for each model (and alignments):
>> TIGR02561  HrpB1_HrpK: type III secretion protein HrpB1/HrpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.2e-06     0.034       9      56 ..      36      83 ..      32      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.2e-06
    TIGR02561  9 vlgGLievvslallraldkvaadpediellldAlRvlrPnlkeldlld 56
                 +l GL+ +v + + ++  +v+++    ++lld lR+l P+l ++dl++
  MMETSP1174-20130828|17888_1 36 ALRGLLMLVLTIVYQSNYDVEENCVSEKALLDHLRGLDPDLTKADLVN 83
                 578999888888888888999999999******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 828.89
//
Query:       MMETSP1174-20130828|17891_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|17893_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.56
# Mc/sec: 196.83
//
Query:       MMETSP1174-20130828|17896_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 153.28
//
Query:       MMETSP1174-20130828|17895_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   14.0   0.0      0.011   13.7   0.0    1.2  1  TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family


Domain annotation for each model (and alignments):
>> TIGR04086  TIGR04086_membr: putative membrane protein, TIGR04086 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.7e-06     0.011      46      82 ..      37      73 ..      24      83 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.7e-06
    TIGR04086 46 svfvGGfvagkkakekgllvGllvGllyflilllisl 82
                 s f+++  a k  +++g+l+Gl+v +l+++i + + +
  MMETSP1174-20130828|17895_1 37 SPFLASSAALKTLRNNGFLHGLIVVALIAAIAFSVHT 73
                 6689999999********************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1174-20130828|17897_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 621.63
//
Query:       MMETSP1174-20130828|17903_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 496.10
//
Query:       MMETSP1174-20130828|17905_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|17907_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|17917_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-19   65.6   0.0    4.1e-19   65.4   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   9.9e-23   4.1e-19     501     648 ..       2     160 ..       1     171 [. 0.80

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 9.9e-23
    TIGR00957 501 eilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtft.wvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeelepdsi.......err....sikdgeg.nsitvknatftwar 648
                  e l+gi+++kl a e  f++kv+  r  el vl++      v  ft  + tp l+  +t+     +  +n lda +af +++l++ lr  + +lp  + +++q +vslkr++ fl   e++   +       er     +++  +   ++ ++++tf w +
  MMETSP1174-20130828|17917_1   2 ETLQGIRIIKLCALEKGFLKKVQEARLVELGVLQRLNDS-IVVVFTiMMATPTLMQTATFLFQTLLYGRN-LDAGTAFTAMSLLDQLRATMTMLPWFMGQMIQGAVSLKRINEFLDCSEVDNTHLshdkndeERTffapTVSASNQdLALCIRDGTFRWGN 160
                  789******************************998765.55556626789*********9888888887.8*******************************************9999887654222222133322224554443368888888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 861.81
//
Query:       MMETSP1174-20130828|17916_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   17.2  32.6    0.00022   16.9  22.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0028   13.2  33.4     0.0033   12.9  23.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  22.6     1e-07   0.00022     231     423 ..      86     280 ..      74     283 .] 0.60

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1e-07
    TIGR02168 231 vlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevae..leeqlaslnaelerleaeleqleerrerlkqei 423
                  +++l+e+++e +e+++e+ +++++l+ +e++++++e+e ++ r++++  ++e+ elq++ ++l+  +s++e +i +l +  ++  + + +lee  ++++++   ++++  + + +l+e++ el+++ ++ ++ +++ ++l+++ ++ ++e  e+  +v++   + ++++ + + e+l + +e+lee+++r ++e 
  MMETSP1174-20130828|17916_1  86 IDKLHEFQKEFQEAQKEIGKLTKRLHGKEKQVEKAEKENATPREADKATQSEMVELQNDNKNLRGMLSKKEDKIIELGKHNAKILEARVALEEAPRKAQAEHVAKSKKQIQKNSNLQEVNVELKKMLNASNTPREKDQALHDAGTKSQQERFEAMIKVKQedYTLNMETMKGKHEKLTTMVEELEENLQRKREEA 280
                  566666667777777777777777777777777777777777777777777777777777777777777777776666666666666666666666666666666666666666666666666666666666666666666665555555544444444311345555566666666666666666666665554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9  23.1   1.6e-06    0.0033     696     887 ..      87     275 ..      81     283 .] 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-06
    TIGR02169 696 selrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieel..eeqkkeiekeieelkakleeleeeleeleaavreLeeelkd 887
                  ++l++ +k+ +e+++++ + +k+++ +ek++e++e+e+++ +e  ++ ++++ el+++ ++ + +l + e +i el ++ ak+ ea  +le+  ++ + e++ +++++++++ + ++++  e+ + ln+++      +e+ q l++   +   e  +++i+ ++e+   ++e ++ + e+l   v+eLee+l+ 
  MMETSP1174-20130828|17916_1  87 DKLHEFQKEFQEAQKEIGKLTKRLHGKEKQVEKAEKENATPREADKATQSEMVELQNDNKNLRGMLSKKEDKIIELGKHNAKILEARVALEEAPRKAQAEHVAKSKKQIQKNSN-LQEVNVELKKMLNASN----TPREKDQALHDAGTKSqqERFEAMIKVKQEDYTLNMETMKGKHEKLTTMVEELEENLQR 275
                  677888999999999999999999999999999999999999999999999999999999999999999998888887777777777777777777777777777666665432.2223333444444433....33333333332222220022234555555556666666666666666666666654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 957.77
//
Query:       MMETSP1174-20130828|17925_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1174-20130828|17922_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 192.48
//
Query:       MMETSP1174-20130828|17928_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1039.91
//
Query:       MMETSP1174-20130828|17931_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|17927_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1352.08
//
Query:       MMETSP1174-20130828|17932_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 899.48
//
Query:       MMETSP1174-20130828|17935_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1174-20130828|17934_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 635.50
//
Query:       MMETSP1174-20130828|17937_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 199.59
//
Query:       MMETSP1174-20130828|17941_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 795.50
//
Query:       MMETSP1174-20130828|17945_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|17948_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 384.23
//
Query:       MMETSP1174-20130828|17952_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 236.98
//
Query:       MMETSP1174-20130828|17953_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   17.8   0.2    0.00018   17.8   0.2    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
    0.00042   18.7   1.7    0.00046   18.5   1.2    1.1  1  TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
  ------ inclusion threshold ------
      0.051    9.4   2.8      0.054    9.3   1.9    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein
       0.11   10.7   6.1      0.038   12.2   2.2    1.6  2  TIGR02975 phageshock_pspG: phage shock protein G


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.8e-07   0.00018     657     713 ..      13      67 ..       4      83 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.8e-07
    TIGR00934 657 lnglFqsvstRtaGfsvvdlsqLhPaiqVsymlmmyvsvlplAisirrTnvyeEqsl 713
                  + +lFq  +   aG   v ls+ +P ++V +m+ m+vs   +A+    T v  E++l
  MMETSP1174-20130828|17953_1  13 VLTLFQISTFDSAGAIYVPLSRNKPYVLVFFMIFMFVSG--IAMMNLITAVIVENAL 67 
                  778***9999***************************75..5555556777777666 PP

>> TIGR01726  HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.2   4.5e-07   0.00046      27      82 ..       8      61 ..       1      70 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.5e-07
    TIGR01726 27 glllallrlsknrllrrlatvyveliRgtPllvqlfliyfgLpligirlsaltaav 82
                  l++++l l+++++ + + ++yv l R+ P +++ f+i+  ++  gi + +l++av
  MMETSP1174-20130828|17953_1  8 NLMISVLTLFQISTFDSAGAIYVPLSRNKPYVLVFFMIFMFVS--GIAMMNLITAV 61
                 68999**********************************9876..45555555554 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.9   5.2e-05     0.054     557     615 ..       4      63 ..       1      73 [. 0.90

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.2e-05
    TIGR00870 557 naystlletlleLFw.aiiGlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmg 615
                  +++++l+ ++l+LF+ ++++         ++ +  +l+ f+++++++ i ++N++ A + 
  MMETSP1174-20130828|17953_1   4 AQFPNLMISVLTLFQiSTFDSAGAIYVPLSRNKPYVLVFFMIFMFVSGIAMMNLITAVIV 63 
                  79************857899999999999999999********************99875 PP

>> TIGR02975  phageshock_pspG: phage shock protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.99     1e+03      18      24 ..      11      17 ..       7      22 .. 0.54
   2 ?   12.2   2.2   3.7e-05     0.038       5      30 ..      39      64 ..      37      68 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.99
    TIGR02975 18 vsllgvl 24
                 +s+l+++
  MMETSP1174-20130828|17953_1 11 ISVLTLF 17
                 3444444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.7e-05
    TIGR02975  5 fvlgflvvllvtGvsllgvlaallva 30
                 +++ f++ + v+G++++ ++ a++v 
  MMETSP1174-20130828|17953_1 39 VLVFFMIFMFVSGIAMMNLITAVIVE 64
                 3445556788************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 357.65
//
Query:       MMETSP1174-20130828|17949_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1394.13
//
Query:       MMETSP1174-20130828|17954_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 476.10
//
Query:       MMETSP1174-20130828|17955_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   14.8   0.0     0.0012   14.8   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.9e-07    0.0012     118     163 ..      42      88 ..       9      90 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.9e-07
    TIGR00870 118 elandestseftkgitalilAihkqnyeivklLl.ekgasvearakg 163
                  e+ +d + ++ + g t+l lA+++  + +v  L+ ++ a+ve +a+g
  MMETSP1174-20130828|17955_1  42 EFDVDVDWERPSDGSTPLYLAAQEGHVSVVAFLVlNRNADVEKAANG 88 
                  566778889999*******************9863788****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1174-20130828|17956_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1174-20130828|17959_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047    9.5   0.9      0.058    9.2   0.6    1.0  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.6   1.4e-05     0.058      82     165 ..      55     134 ..      46     148 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.4e-05
    TIGR02865  82 kkklvvllivvflevavaaifkillnklvvpldlilaiveaslsavlvlifnlsisllknkrtkellkneeivsliiliasvlt 165
                  ++k++v+++++fl+va+   f++ +   + + +l+    ea+l +   + ++ +  ++k+ ++ +l +   i+++++ +a+++ 
  MMETSP1174-20130828|17959_1  55 THKTIVVPLLIFLSVASVVLFGLRIGLSC-EAALW---SEAGLLVQFFVAIFFTRAFIKGYSYLRLTQLFSIICACFSLAVAIR 134
                  5678999*****************99888.66666...7999999988888899999************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 656.38
//
Query:       MMETSP1174-20130828|17962_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|17960_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   50.5   0.0    3.6e-14   49.8   0.0    1.3  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
    9.8e-10   35.0   0.0    1.3e-09   34.6   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
      1e-05   23.3   1.0     0.0029   15.4   0.1    2.9  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    0.00015   19.3   0.3      0.051   11.0   0.0    2.3  2  TIGR01351 adk: adenylate kinases
    0.00018   19.1   0.7      0.016   12.7   0.0    2.9  3  TIGR01360 aden_kin_iso1: adenylate kinase
      0.001   16.4   0.0     0.0025   15.1   0.0    1.7  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
     0.0012   16.1   0.0      0.002   15.4   0.0    1.3  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0012   15.5   0.1     0.0035   14.0   0.0    1.5  2  TIGR00959 ffh: signal recognition particle protein
     0.0014   15.8   0.0     0.0021   15.2   0.0    1.3  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0022   15.3   0.0     0.0036   14.6   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0029   15.0   0.0     0.0046   14.3   0.0    1.4  1  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0029   15.2   0.0     0.0053   14.4   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0034   15.0   0.0       0.04   11.5   0.0    2.2  1  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0035   14.9   0.0        1.3    6.5   0.0    2.6  2  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0098   13.2   0.0      0.015   12.7   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.017   12.4   0.0    1.2  1  TIGR01978 sufC: FeS assembly ATPase SufC
      0.012   12.6   0.0      0.023   11.6   0.0    1.4  1  TIGR00750 lao: LAO/AO transport system ATPase
       0.02   10.6   0.0      0.026   10.3   0.0    1.2  1  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.028   10.8   0.0      0.034   10.5   0.0    1.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      0.034   11.3   0.0      0.052   10.7   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      0.047   10.4   0.0      0.063   10.0   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit


Domain annotation for each model (and alignments):
>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   1.9e-16   3.6e-14     364     500 ..     170     328 ..     142     343 .. 0.70

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.9e-16
    TIGR01663 364 pevvvavGlpGaGkstflkkfl.........vsaG.....ykivnadtlGstqrcltackraldsGkrvvvdntnvdaasrkkylqlare..kgvpcrcllltvtleqvkhni.afr...elsdsa...rikvkdmvlygykkkyeepaldeGfiailkv 500
                    vv++vG+pG+Gkst+++k +          s G     ++ + +d lG+ +rc+    +al +G ++ +d  n d a r+++++la++  +g+p   + l+++ e       + r      d     + kvk +v   ++k    p   eGf+++ + 
  MMETSP1174-20130828|17960_1 170 QVVVLLVGIPGSGKSTLCEKLIgdkhpddlsGSVGhaalnWQRISQDKLGTRKRCIQVASKALTEGDSILIDRCNFDVAQRAHWVKLAEDrpRGIPVHVIQLDIPEETCLQRAlRRRgheGAVDPVqmpKAKVKSIV-RRMQKDLVPPLCTEGFASVIRC 328
                  346779************9987332222222234522222456779******************************************763369********99977654333032211123343311156677665.66789999999*****999875 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   6.9e-12   1.3e-09       9     164 ..     171     337 ..     164     345 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 6.9e-12
    TIGR04075   9 slvvlvGasgsGkstfarkhfkptevlssdvfrglvsd.dendqsasadafdv...leyiagkrlkrgkltvvdatnvqaedrkklvelarey.dvlpv.aivldlpekvclernaaredr.......dfgekvvrrqlkelrrsl.kklkreGfrkvyvlkseeevdav 164
                   +v+lvG  gsGkst+ +k   +++    d + g v     n q +s+d +       ++a+k l++g   ++d  n   ++r+++v+la +    +pv +i ld+pe+ cl+r+ +r  +       ++++  v+  ++++++ l   l +eGf +v    +++++d +
  MMETSP1174-20130828|17960_1 171 VVVLLVGIPGSGKSTLCEKLIGDKH---PDDLSGSVGHaALNWQRISQDKLGTrkrCIQVASKALTEGDSILIDRCNFDVAQRAHWVKLAEDRpRGIPVhVIQLDIPEETCLQRALRRRGHegavdpvQMPKAKVKSIVRRMQKDLvPPLCTEGFASVIRCCTNQDIDRA 337
                  5799****************99875...45555555541446777777776551115679******************************8762345551677************9998661111112455555666666666654245789******999999999976 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1     2e+02     115     166 ..      94     152 ..      83     161 .. 0.58
   2 !   15.4   0.1   1.5e-05    0.0029       1     134 [.     172     293 ..     172     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1
    TIGR01359 115 seevmvkrllkrgqssGrvddni....esl....kkrletykeetlpvieyfekknkvkk 166
                   + ++v+r+l  +q + ++dd +     +     k+r+e   ++   + e +ek++++++
  MMETSP1174-20130828|17960_1  94 RKAELVERILAYSQ-ARKTDDEKtpndMTRrkkpKRRVEGGGTSDSSIAEGYEKTEQIRE 152
                  56778999999998.555666431111222111123444445555666666666666665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.5e-05
    TIGR01359   1 vvfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleaweklidekve..vkfvlfldcseevmvkrllkrgqssGrvd 134
                  vv+++G PGsGk t C+k++ + +   ls G +           + +l  + i + k+   +  +++ +ka++e +   + lid    +   ++ w kl +++    +  v+ ld++ee++ +r l+r    G vd
  MMETSP1174-20130828|17960_1 172 VVLLVGIPGSGKSTLCEKLIGDKHPDDLS-GSVG----------HAALNWQRISQDKLGTRKRCIQVASKALTEGD---SILIDRCNFDVAQRAHWVKLAEDRPRgiPVHVIQLDIPEETCLQRALRRRGHEGAVD 293
                  67889*************99776655555.3333..........34444567888888888889999999998877...7999999999999999999998765421345999999*******9999998899888 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00026     0.051       2      21 ..     173     192 ..     172     203 .. 0.85
   2 !    6.0   0.0    0.0087       1.7     107     132 ..     265     290 ..     246     314 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00026
    TIGR01351   2 lvllGpPGsGKGTqakrlae 21 
                  ++l+G PGsGK+T +++l  
  MMETSP1174-20130828|17960_1 173 VLLVGIPGSGKSTLCEKLIG 192
                  789************99875 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0087
    TIGR01351 107 ldavielkvpdevlverisgRricpk 132
                    +vi+l++p+e+ ++r  +Rr ++ 
  MMETSP1174-20130828|17960_1 265 PVHVIQLDIPEETCLQRALRRRGHEG 290
                  579******************98765 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.63   1.2e+02     118     138 ..      96     116 ..      89     156 .. 0.65
   2 !   12.7   0.0   8.2e-05     0.016       3      25 ..     170     192 ..     168     202 .. 0.85
   3 ?    2.8   0.0     0.089        17     107     136 ..     265     294 ..     224     342 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.63
    TIGR01360 118 dtlvkrllkraetsarvddne 138
                    lv+r+l+ +++   +d+++
  MMETSP1174-20130828|17960_1  96 AELVERILAYSQARKTDDEKT 116
                  568999999999887777644 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 8.2e-05
    TIGR01360   3 vkiifivGGpGsGkGtqcekive 25 
                    ++ +vG pGsGk t cek++ 
  MMETSP1174-20130828|17960_1 170 QVVVLLVGIPGSGKSTLCEKLIG 192
                  567899**************985 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.089
    TIGR01360 107 aklvlyldvsedtlvkrllkraetsarvdd 136
                  +  v+ ld+ e+t  +r l+r    + vd 
  MMETSP1174-20130828|17960_1 265 PVHVIQLDIPEETCLQRALRRRGHEGAVDP 294
                  556899*************99888777774 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.3e-05    0.0025       2     116 ..     173     285 ..     172     308 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.3e-05
    TIGR03574   2 iiltGlPgvGkstfskelakklseknidviilgtdllreslpvWke.kyeef.irestlklikealenkysvivddtnyynskrrdliniakerd..knyiiiylkapldvllkrnier 116
                  ++l G+Pg+Gkst++ +l    + +++   +  + +l      W+  +++++  r+   ++  +al +  s+++d  n+  ++r   +++a +r    +  +i l  p +++l+r ++r
  MMETSP1174-20130828|17960_1 173 VLLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHA-AL-----NWQRiSQDKLgTRKRCIQVASKALTEGDSILIDRCNFDVAQRAHWVKLAEDRPrgIPVHVIQLDIPEETCLQRALRR 285
                  789***********99998877777776654443.33.....455545555436888999999*****999********************98751168899*************9765 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-05     0.002      99     143 ..     151     195 ..     135     199 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1e-05
    TIGR03596  99 kkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkv 143
                  +++ + k +++++   + k++ +l vGiP  GKStl  +l++ k+
  MMETSP1174-20130828|17960_1 151 RETKSIKLDQHNEIAPARKQVVVLLVGIPGSGKSTLCEKLIGDKH 195
                  4444445555555566789999******************99875 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6     3e+02     383     423 ..     111     151 ..      99     156 .. 0.78
   2 !   14.0   0.0   1.8e-05    0.0035      89     120 ..     161     191 ..     151     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.6
    TIGR00959 383 tkeErknpkilnasRkkRiakGsGtsvsdvnklikefeqak 423
                  t +E++  ++   ++ kR ++G Gts s + +  ++ eq++
  MMETSP1174-20130828|17960_1 111 TDDEKTPNDMTRRKKPKRRVEGGGTSDSSIAEGYEKTEQIR 151
                  66777777777788889999999999998888777777766 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.8e-05
    TIGR00959  89 saelklaekkpavillvGLqGsGKtttaaKla 120
                  ++e++ a+k  +v+llvG+ GsGK t + Kl 
  MMETSP1174-20130828|17960_1 161 HNEIAPARK-QVVVLLVGIPGSGKSTLCEKLI 191
                  456666555.59******************96 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05    0.0021      40      99 ..     130     190 ..      97     200 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-05
    TIGR00064  40 vkeeeklkellkeelkealkeileketklel.kelkeekkpnvillvGvNGvGKTttiaKl 99 
                  v+   + ++ ++e ++++ +  ++k+ kl+  +e+  ++k +v+llvG+ G+GK t   Kl
  MMETSP1174-20130828|17960_1 130 VEGGGTSDSSIAEGYEKTEQIRETKSIKLDQhNEIAPARKQVVVLLVGIPGSGKSTLCEKL 190
                  444444444455555444444444444444447888999*****************98887 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05    0.0036      17      74 ..     169     228 ..     157     262 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.8e-05
    TIGR01166  17 rgevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysr..kgllelrkkvalvl 74 
                  +  v+ l+G  G+Gkstl ++l G  +P      ++ ++l+++r  ++ l +rk+   v 
  MMETSP1174-20130828|17960_1 169 KQVVVLLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHAALNWQRisQDKLGTRKRCIQVA 228
                  44567789********************97666666777777762233344455544443 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.4e-05    0.0046      16      56 ..     156     196 ..     144     242 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.4e-05
    TIGR00073  16 rlaeknrerlekkgllvlnllssiGsGktlllekliealkk 56 
                  ++ ++  e   +++++v+ l++ +GsGk +l ekli +++ 
  MMETSP1174-20130828|17960_1 156 IKLDQHNEIAPARKQVVVLLVGIPGSGKSTLCEKLIGDKHP 196
                  5556666677788999999*****************98764 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.7e-05    0.0053       2      29 ..     169     195 ..     168     210 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.7e-05
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkis 29 
                  k++ +++vG +++GKstL ++l+++k  
  MMETSP1174-20130828|17960_1 169 KQVVVLLVGIPGSGKSTLCEKLIGDK-H 195
                  67899******************999.4 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00021      0.04       2     118 ..     174     288 ..     173     312 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
    TIGR01313   2 vlmGvaGsGkstiakelakklgakfieGDdlhpkaniekmsaGiPLtDdDRlpWLekladalakaaakekvksiitCs..aLkrkYRDllR...eaeaelafiyLeaskevilkRlksRkgh 118
                  +l+G+ GsGkst+ ++l+   + + + G   h++ n +++s+       D+l+  +++ + + ka ++++   i  C     +r++   l     +   +++i L+ ++e+ l+R  +R+gh
  MMETSP1174-20130828|17960_1 174 LLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHAALNWQRISQ-------DKLGTRKRCIQVASKALTEGDSILIDRCNfdVAQRAHWVKLAedrPRGIPVHVIQLDIPEETCLQRALRRRGH 288
                  689*************************************97.......4455555555555554444444334444311223333333322213333566666666666667766666666 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0069       1.3       5      25 ..     171     191 ..     168     199 .. 0.85
   2 ?    5.4   0.0     0.014       2.8      82     151 ..     227     287 ..     220     315 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0069
    TIGR00041   5 kfiviEGidGaGKTtqlellk 25 
                  + +++ Gi G+GK+t++e+l 
  MMETSP1174-20130828|17960_1 171 VVVLLVGIPGSGKSTLCEKLI 191
                  668889***********9985 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.014
    TIGR00041  82 kikpalaegklvisDRylfSslAYqglarkididlvlelnekalqlkPdlvilLdidpevalerlskrge 151
                  +  +al+eg  ++ DR+ f  +A  +       ++  +l e+ ++  P  vi Ldi+ e+ l+r+  r+ 
  MMETSP1174-20130828|17960_1 227 VASKALTEGDSILIDRCNFD-VAQRA-------HW-VKLAEDRPRGIPVHVIQLDIPEETCLQRALRRRG 287
                  55678888888888888874.44444.......33.57888888889*****************876654 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   7.4e-05     0.015      39      92 ..     172     227 ..     139     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.4e-05
    TIGR02769  39 tvallGrsGaGkstlarlllGlekPa..kGevsfrGqdlakldrkqrkafrrdvql 92 
                   v l+G  G+Gkstl+  l+G ++P   +G+v ++  + +++ +++  + +r +q+
  MMETSP1174-20130828|17960_1 172 VVLLVGIPGSGKSTLCEKLIGDKHPDdlSGSVGHAALNWQRISQDKLGTRKRCIQV 227
                  56789********************7446999999999999999988888888887 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.6e-05     0.017      27      63 ..     171     207 ..     154     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.6e-05
    TIGR01978  27 evhaimGpnGsGkstLskvlaghekyevtsGeiklkg 63 
                   v+ ++G  GsGkstL++ l+g+++    sG++  + 
  MMETSP1174-20130828|17960_1 171 VVVLLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHAA 207
                  477889*****************99888888776554 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012     0.023      33      55 ..     169     191 ..     151     197 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00012
    TIGR00750  33 rahvvGltGvPGaGkstlvekli 55 
                  +  vv l G+PG Gkstl ekli
  MMETSP1174-20130828|17960_1 169 KQVVVLLVGIPGSGKSTLCEKLI 191
                  45577899*************98 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013     0.026     316     359 ..     150     191 ..      96     213 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
    TIGR01448 316 vekklelelseeqkealktaiqdkvviltGGPGtGKtTvtkaii 359
                  +  + +++++ +q++ +  a ++ vv+l G PG GK+T+   +i
  MMETSP1174-20130828|17960_1 150 I--RETKSIKLDQHNEIAPARKQVVVLLVGIPGSGKSTLCEKLI 191
                  3..3345566689999**********************987765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017     0.034     347     409 ..     169     230 ..      91     256 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00017
    TIGR03719 347 kggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrdalddnktvweeisd 409
                  k+ +v ++G  G+Gkstl + ++g+++pd+ + ++G++  l +   s+d+l ++k   +  s+
  MMETSP1174-20130828|17960_1 169 KQVVVLLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHA-ALNWQRISQDKLGTRKRCIQVASK 230
                  4568889**********************999999986.577777888888888877766554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00027     0.052      10      65 ..     168     224 ..     162     233 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00027
    TIGR02770  10 krgkvlalvGesGsGksltalailglldk.eltktsGeilldgkelaalalrgreia 65 
                  ++  v+ lvG  GsGks+ +  ++g  ++ +l+ + G+ +l+ + +++ +l  r+ +
  MMETSP1174-20130828|17960_1 168 RKQVVVLLVGIPGSGKSTLCEKLIGDKHPdDLSGSVGHAALNWQRISQDKLGTRKRC 224
                  55668899*************999876651556678999999888888777666655 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00032     0.063     346     386 ..     168     208 ..     144     238 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00032
    TIGR02857 346 epgelvalvGaSGaGKstllklllgfvepteGailvngael 386
                  + + +v lvG  G+GKstl + l g  +p++ + +v+ a+l
  MMETSP1174-20130828|17960_1 168 RKQVVVLLVGIPGSGKSTLCEKLIGDKHPDDLSGSVGHAAL 208
                  45667899*****************9999987777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        85  (0.0207216); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1174-20130828|17965_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-19   67.8   0.1    3.1e-19   67.4   0.1    1.1  1  TIGR01682 moaD: molybdopterin converting factor, subunit 1
    9.2e-12   43.2   0.0    1.6e-11   42.4   0.0    1.4  1  TIGR01687 moaD_arch: MoaD family protein


Domain annotation for each model (and alignments):
>> TIGR01682  moaD: molybdopterin converting factor, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   1.5e-22   3.1e-19       1      80 []      27     110 .]      27     110 .] 0.92

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 1.5e-22
    TIGR01682   1 ikvlyFAkvrekagtdeetlelpdevtt..veelkellakegpellesrkqvrvAvneeyve..deallkegdevAfiPPvsGG 80 
                  +kvl+FA+ re agt++ tle+p  ++   v  l+ ++a+  p+++e+ + + +A+n+ey     + +l++gdevA+iPP+sGG
  MMETSP1174-20130828|17965_1  27 VKVLFFASAREMAGTESVTLEMPPPIAEqdVLHLRSQIAEAFPATAEVASIITLALNQEYLPfgTNVPLNDGDEVAVIPPISGG 110
                  79*********************98865115578999999999*******************98999****************9 PP

>> TIGR01687  moaD_arch: MoaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   7.7e-15   1.6e-11       1      88 []      27     110 .]      27     110 .] 0.81

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 7.7e-15
    TIGR01687   1 vrvkyfatlrditgkkeeeiele.gktvedlleelkarypkekkelfkegaelvkeviilvNgrnvdsgleteLkdgDevailPpvsGG 88 
                  v+v +fa  r+++g++++++e+      +d+l +l ++      e+f  +ae  + +++++N  ++ +g + +L+dgDeva++Pp+sGG
  MMETSP1174-20130828|17965_1  27 VKVLFFASAREMAGTESVTLEMPpPIAEQDVL-HLRSQIA----EAFPATAEVASIITLALNQEYLPFGTNVPLNDGDEVAVIPPISGG 110
                  8999******************9533334444.4444444....45555566677899******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 604.95
//
Query:       MMETSP1174-20130828|17969_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|17974_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 360.77
//
Query:       MMETSP1174-20130828|17983_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1993.73
//
Query:       MMETSP1174-20130828|17988_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   13.7   0.1       0.01   13.4   0.1    1.1  1  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family


Domain annotation for each model (and alignments):
>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.5e-06      0.01      65     128 ..      57     119 ..      54     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-06
    TIGR02479  65 lDeLRkldwvprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaesl 128
                  +De+R    +   +r++++k+ + i++l   ++r  ++ee+a++ ++++ e+r + ++++  + 
  MMETSP1174-20130828|17988_1  57 FDEIRIKAIMDAVSRSEFNKIISNIARLAIMYRR-NSSEEVATSHDMSVVELRLICQDTQPYRQ 119
                  79**************************976665.56789*************99998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 776.71
//
Query:       MMETSP1174-20130828|17990_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   21.9   0.6    1.7e-05   21.7   0.4    1.1  1  TIGR00798 mtc: tricarboxylate carrier


Domain annotation for each model (and alignments):
>> TIGR00798  mtc: tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.4   4.2e-09   1.7e-05      12      62 ..       2      50 ..       1      63 [. 0.78

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.2e-09
    TIGR00798 12 qstflgrarhflevtdpltllssekklekareiledykkgkvsnltseelw 62
                 +stf gr+++f ++t p+ ++ +++++e a+++l+ +++   +   + + w
  MMETSP1174-20130828|17990_1  2 MSTFFGRTQFFWQLTKPTHIFCTTEEIEAAKKVLQVHHTQVEQ--AKLQAW 50
                 89*******************************9876554433..333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|17989_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1204.93
//
Query:       MMETSP1174-20130828|17994_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1687.86
//
Query:       MMETSP1174-20130828|17996_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1000.56
//
Query:       MMETSP1174-20130828|17992_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 1589.15
//
Query:       MMETSP1174-20130828|17999_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 931.26
//
Query:       MMETSP1174-20130828|17998_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1174-20130828|18006_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|18004_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   32.5   0.0    3.6e-08   31.3   0.0    1.5  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.5e-06   25.5   0.0    4.1e-06   24.1   0.0    1.7  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00063   17.0   0.1     0.0008   16.7   0.0    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0073   13.2   0.0      0.009   12.9   0.0    1.2  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.014   12.6   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.011   12.9   0.0      0.015   12.5   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      0.023   11.0   0.0      0.028   10.7   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   6.2e-11   3.6e-08      19     138 ..      49     176 ..      47     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 6.2e-11
    TIGR02072  19 iakkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekksfDlivSnlalQ........WlddlsevlaelarvlkpgGl.lafstfgke 138
                  ++ + +++l e  +++ +++L iGcG+  l  +l+++   + ++  D+s   + q++++ + ++f  +++  l++ + s+D++++   +          +++ + vl+e+ r l+ gG+ l+fstf+++
  MMETSP1174-20130828|18004_1  49 ACMHVVNVLGEEFQRDSTNILHIGCGSSELGVMLRNSGFLQ-VTNADFSSAVIDQMRERFPCHSFEVMNALALEIPDGSLDVVICKGMFDsitsddatMCEQARGVLDEIVRTLRVGGVyLLFSTFAPD 176
                  577889999998899999*****************998777.9************************************7777776666422222222599999**************7589****987 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     7e-09   4.1e-06      37     149 ..      62     177 ..      45     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 7e-09
    TIGR01934  37 eekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRN.........vtdiekaLkelaRVlkpggrlvilefskpkn 149
                  ++ ++++l + +G+ +l + l ++  ++vt +D+s+++++  +++++ +     +f + +a +L ++d s+d+v +  G+           +++ + +L+e++R l+ gg  ++  ++ p+ 
  MMETSP1174-20130828|18004_1  62 QRDSTNILHIGCGSSELGVMLRNSGFLQVTNADFSSAVIDQMRERFPCH-----SFEVMNALALEIPDGSLDVVICK-GMFDsitsddatmCEQARGVLDEIVRTLRVGGVYLLFSTFAPDD 177
                  447899************99999888*******************9743.....699***************99654.44321111111114455667889999999999888887777765 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06    0.0008      45     127 ..      54     138 ..      45     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-06
    TIGR02021  45 lewlpkd.slkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavva...lDv 127
                  +++l+++ +   +++l  GCG+  l + l ++G  +v+ +D s +++++ r+r + +       Fev + ++le   g  D+v++   +D+
  MMETSP1174-20130828|18004_1  54 VNVLGEEfQRDSTNILHIGCGSSELGVMLRNSGFlQVTNADFSSAVIDQMRERFPCHS------FEVMNALALEipdGSLDVVICkgmFDS 138
                  56677776667889*******************659*****************98766......444443333222366666666333343 PP

>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05     0.009     231     298 ..     125     188 ..      97     211 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    TIGR00169 231 eqldvvvtsnlfGDilsDeasvitGslGlLPsaslsskglalfepvhgsapdiagkgianpiaailsa 298
                   +ldvv+++ +f  i sD a++   + G+L     + ++ +++    + apd      a+p+a++l +
  MMETSP1174-20130828|18004_1 125 GSLDVVICKGMFDSITSDDATMCEQARGVLDEIVRTLRVGGVYLLFSTFAPDD----KAKPMAELLKL 188
                  479*********************99999988777777777777777777775....44455555544 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05     0.014     154     237 ..      59     138 ..      47     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.5e-05
    TIGR00406 154 esldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkiegkaDvivaNilAev 237
                  e++++   +++ +GcGS  L++ +   g  +v+  D  +  +++ r+ +     + ++ + le      +g  Dv+++  + + 
  MMETSP1174-20130828|18004_1  59 EEFQRDSTNILHIGCGSSELGVMLRNSGFLQVTNADFSSAVIDQMRERFPCHSFEVMNALALE----IPDGSLDVVICKGMFDS 138
                  556667799*************************************99987766655555555....67888899988755555 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05     0.015      49     132 ..      64     142 ..      40     188 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-05
    TIGR01983  49 eglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadl 132
                  +++++l +GcG+  l   l ++g+  vt  D s+ +i+  ++    +  +     + ++  l+   + s Dvv++  + + +++ 
  MMETSP1174-20130828|18004_1  64 DSTNILHIGCGSSELGVMLRNSGFLqVTNADFSSAVIDQMRERFPCHSFE-----VMNALALEIP-DGSLDVVICKGMFDSITSD 142
                  5789*******************977***********9887765554443.....3333333222.3456777777766665433 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.7e-05     0.028     279     345 ..      61     126 ..      21     130 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-05
    TIGR04074 279 resgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqss 345
                   + ++ ++l +GcG+++L   +l+++ f +++ +d s + +++ ++r+ +++ + ++   +e+  +s
  MMETSP1174-20130828|18004_1  61 FQRDSTNILHIGCGSSELG-VMLRNSGFLQVTNADFSSAVIDQMRERFPCHSFEVMNALALEIPDGS 126
                  3457789*********986.56788999*******************98887776666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 694.51
//
Query:       MMETSP1174-20130828|18009_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1174-20130828|18010_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1301.47
//
Query:       MMETSP1174-20130828|18017_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.51    6.4   7.6       0.61    6.1   5.3    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
        7.8    3.3  14.0        8.1    3.3   9.7    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.3    0.0003      0.61     474     550 ..       6      82 ..       2      86 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0003
    TIGR03346 474 lekvklelekakregdlakaaelkygklpelekeleeaeekekeekkekllkeevteeeiaevvsrwtGiPvsklle 550
                   ek+++e+e+a+++   a  ae+ + k ++ ek   +ae++e  + + + ++ e +e e a v ++ + iP+   +e
  MMETSP1174-20130828|18017_1   6 AEKAHAEVEAAEKTRLEAEEAEMAHVKAEDAEKARLNAERAEIARLEVEKVRVEADEAEFARVEAKKAQIPLMEAVE 82 
                  46667777777777766777777777777777777777776666666666777777777777777777777666665 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   9.7     0.004       8.1       8      81 ..       5      71 ..       1      87 [. 0.48

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.004
    TIGR01554  8 laelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea.......aaeeeakeaasgeagkeeeeeeeakee 81
                  ae+a +  +++e++++e++e+e + ++a +ae+++l+ae +++ ++       +              ++e+e ++ +++
  MMETSP1174-20130828|18017_1  5 TAEKAHAEVEAAEKTRLEAEEAEMAHVKAEDAEKARLNAERAEIARLevekvrvE--------------ADEAEFARVEAK 71
                 3333333335666666666666665555555555555555555555544344441..............333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|18022_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|18024_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 387.72
//
Query:       MMETSP1174-20130828|18028_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 135.21
//
Query:       MMETSP1174-20130828|18032_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.60
# Mc/sec: 499.36
//
Query:       MMETSP1174-20130828|18030_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.60
# Mc/sec: 717.14
//
Query:       MMETSP1174-20130828|18036_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|18039_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-32  110.4   0.0    2.2e-32  110.1   0.0    1.0  1  TIGR00376 TIGR00376: putative DNA helicase
  ------ inclusion threshold ------
       0.04   10.0   0.0      0.044    9.9   0.0    1.2  1  TIGR02784 addA_alphas: double-strand break repair helicase AddA


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   1.1e-35   2.2e-32     530     637 ..       4     113 ..       1     115 [. 0.93

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 1.1e-35
    TIGR00376 530 eeigvisPYdaqvdllrklleekki..diEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkkkgevreae 637
                   +++v+sPY  qvd +r  l+e+ i  ++ v +vD FqG E ++++ s vRsn +g++GFL+d RRl valtRarR l++ gd+++l++ + ++ li+ ++++g v +a+
  MMETSP1174-20130828|18039_1   4 GSVAVLSPYSRQVDRIRSELVERDIahEVRVGTVDSFQGQETDAVVFSAVRSNPEGDLGFLRDPRRLCVALTRARRGLVIAGDKRTLRKCHHWAALIDSCQERGCVLDAD 113
                  689*****************888763377889************************************************************************987665 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.1e-05     0.044     852     887 ..      68     102 ..      22     131 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.1e-05
    TIGR02784 852 RLLYVamTRAedrLivcgargkkeskkesWyalvka 887
                  R L Va+TRA+  L+++g +++ ++ +  W al+++
  MMETSP1174-20130828|18039_1  68 RRLCVALTRARRGLVIAGDKRTLRKCH-HWAALIDS 102
                  6689****************8877777.89998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 579.29
//
Query:       MMETSP1174-20130828|18043_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    6.8   5.8       0.63    7.7   0.0    2.3  2  TIGR00319 desulf_FeS4: desulfoferrodoxin FeS4 iron-binding domain


Domain annotation for each model (and alignments):
>> TIGR00319  desulf_FeS4: desulfoferrodoxin FeS4 iron-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00015      0.63      16      29 ..      25      38 ..      23      42 .. 0.90
   2 ?    0.3   1.7      0.03   1.2e+02      12      21 ..      54      63 ..      52      68 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00015
    TIGR00319 16 iVeVleaGgGqLVC 29
                 +VeVl +  GqL C
  MMETSP1174-20130828|18043_1 25 VVEVLGNLQGQLAC 38
                 9************* PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.03
    TIGR00319 12 vCGniVeVle 21
                  CG ++ V+e
  MMETSP1174-20130828|18043_1 54 FCGAVIIVVE 63
                 5998765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|18042_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-57  192.3   0.0    3.9e-57  192.0   0.0    1.0  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
      0.005   14.0   0.0      0.069   10.2   0.0    2.0  2  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.016   12.6   0.0    1.2  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
      0.027   11.9   0.0      0.043   11.2   0.0    1.2  1  TIGR00266 TIGR00266: TIGR00266 family protein


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.0   3.8e-60   3.9e-57      44     306 ..      47     317 ..      25     320 .. 0.91

  Alignments for each domain:
  == domain 1    score: 192.0 bits;  conditional E-value: 3.8e-60
    TIGR01327  44 livRSatkvteelleaa.ekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflG.......tElygktlGviG.lGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevv 306
                  ++v  + +v    + +  +++  i+ aG G +Nid+eaa ++Gi v N P+ +  ++a l l+ +la + ++ + ++++ ++  +r +flG       +El+g+t+G++G  G iGs+v++ a+a+gm+v++    +++++ ++ gve++++l+ell+ +D++++H Plt++t++li++ +l +mK++++++N+aRGG+idE+ALv al eg+++aa lDv   EPp   + l +l+n ++tpH+g   +E+ ++    va +++++l g+++
  MMETSP1174-20130828|18042_1  47 ILVTKEIPVPGSAIRRFpPSVNLIVEAGTGYNNIDLEAARERGITVCNVPSYSRDAVAQLVLTFILASSCSLLAQHRRLCDG--DRGNFLGpfmdtpiVELKGRTIGLVGgRGSIGSRVSELARAVGMRVIVGSRSLPSAQTHSAGVEYASSLEELLEASDFVSLHCPLTPDTEHLIDAAALSRMKSTAVLINTARGGLIDESALVIALREGQIAAAYLDVQDPEPPVeTSALWSLPNAYLTPHIGWKRTETRQRLIDAVAGNIRSFLSGTPT 317
                  55666666666667666578999***************************************************99999877..799999977777777**********647******************************************************************************************************************996799************************************99875 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.03        30     234     263 ..      68      97 ..      33     119 .. 0.79
   2 !   10.2   0.0   6.7e-05     0.069     155     240 ..     152     239 ..     139     248 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.03
    TIGR02853 234 aviiDlaskPGGtDfeyakkrGikalLapg 263
                   +i++  +    +D+e+a++rGi+   +p+
  MMETSP1174-20130828|18042_1  68 NLIVEAGTGYNNIDLEAARERGITVCNVPS 97 
                  5677777777889**********9988887 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 6.7e-05
    TIGR02853 155 lvlGlGrtGktiarllsalgakvsvaareskdlarilelgle.pvelkeleekvaeiDivintiP..alvltkdvlsklpkhaviiDla 240
                  lv G G +G  +++l +a+g +v v++r+    a+   +g+e + +l+el e+   + +     P    ++++  ls++++ av+i+ a
  MMETSP1174-20130828|18042_1 152 LVGGRGSIGSRVSELARAVGMRVIVGSRSLP-SAQTHSAGVEyASSLEELLEASDFVSLHCPLTPdtEHLIDAAALSRMKSTAVLINTA 239
                  677899*********************9865.5666666665144555555555555555555553346899999*********99877 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.016       1      44 [.     149     191 ..     149     223 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
    TIGR03649   1 tiLllgGtGkvasriarllaaasvpllvasrssssaaledekav 44 
                  ti l+gG+G ++sr+++l +a ++ ++v+srs   +a+++  +v
  MMETSP1174-20130828|18042_1 149 TIGLVGGRGSIGSRVSELARAVGMRVIVGSRSL-PSAQTHSAGV 191
                  6889**************************998.4444444444 PP

>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.2e-05     0.043      10      51 ..     205     246 ..     198     258 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.2e-05
    TIGR00266  10 sysvleltLkpgeevlvetgalvsmdrsvelktelkGGlLda 51 
                   +  l+  L p  e l+++ al  m++  +l +  +GGl+d 
  MMETSP1174-20130828|18042_1 205 DFVSLHCPLTPDTEHLIDAAALSRMKSTAVLINTARGGLIDE 246
                  57789999*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1176.90
//
Query:       MMETSP1174-20130828|18045_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 598.66
//
Query:       MMETSP1174-20130828|18047_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 400.09
//
Query:       MMETSP1174-20130828|18049_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 281.01
//
Query:       MMETSP1174-20130828|18050_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 167.66
//
Query:       MMETSP1174-20130828|18055_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1174-20130828|18062_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|18057_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1790.46
//
Query:       MMETSP1174-20130828|18064_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00085   17.6   0.5       0.59    8.5   0.0    3.3  4  TIGR03905 TIGR03905_4_Cys: uncharacterized protein TIGR03905
  ------ inclusion threshold ------
      0.018   10.7   0.1      0.022   10.5   0.0    1.2  1  TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent


Domain annotation for each model (and alignments):
>> TIGR03905  TIGR03905_4_Cys: uncharacterized protein TIGR03905
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0044       8.9       4      32 ..       7      35 ..       4      57 .. 0.90
   2 !    8.5   0.0   0.00029      0.59       9      52 ..      78     118 ..      70     129 .. 0.87
   3 ?   -1.2   0.0      0.29     6e+02      15      32 ..     128     145 ..     124     151 .. 0.81
   4 ?    0.4   0.0     0.094   1.9e+02       9      32 ..     144     167 ..     136     169 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0044
    TIGR03905  4 stkGvCskkiqidiegdkvkkvkflgGCd 32
                 s+ G Cs+  ++ +e  +v++v  lg C+
  MMETSP1174-20130828|18064_1  7 SALGTCSNLHTLYLEYTQVTDVSALGTCN 35
                 56799***********************7 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00029
    TIGR03905   9 CskkiqidiegdkvkkvkflgGCdGnLkaiskLveGmkvedvik 52 
                  Cs   ++ ++g kv +   +  C  nL+++s +  Gmkv+d+++
  MMETSP1174-20130828|18064_1  78 CSSLHTLRLDGTKVMDLSAIRACS-NLHTLSLI--GMKVTDILA 118
                  9999999****************6.*****943..******864 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.29
    TIGR03905  15 idiegdkvkkvkflgGCd 32 
                  + ++g kv +v  +  C+
  MMETSP1174-20130828|18064_1 128 VRLDGTKVMDVSAFRACN 145
                  567889999999888886 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.094
    TIGR03905   9 CskkiqidiegdkvkkvkflgGCd 32 
                  C    ++ ++  kv++v  lg C+
  MMETSP1174-20130828|18064_1 144 CNSLHTLRLDRTKVTDVSALGTCK 167
                  666778889999********9996 PP

>> TIGR02333  2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.1e-05     0.022     767     833 ..     100     167 ..      77     171 .] 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
    TIGR02333 767 ferihrtnlvgmgvlp.lefkpgtnrktlaldgtevydvvgeitpradltlvvtrkngeklevpvtcr 833
                     +h   l+gm v   l + +    +t+ ldgt+v+dv   ++ ++  tl + r +   +    tc+
  MMETSP1174-20130828|18064_1 100 CSNLHTLSLIGMKVTDiLALSTLRSLHTVRLDGTKVMDVSAFRACNSLHTLRLDRTKVTDVSALGTCK 167
                  46799*********873678888999******************999999999999988888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 564.25
//
Query:       MMETSP1174-20130828|18065_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|18069_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1082.31
//
Query:       MMETSP1174-20130828|18071_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-05   18.5  32.9    9.3e-05   18.1  22.8    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.002   13.7  35.7     0.0024   13.4  24.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.85    7.8  17.4       0.63    8.2   2.5    3.5  3  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family
        8.4    4.8  10.9        4.6    5.7   1.3    3.4  3  TIGR01687 moaD_arch: MoaD family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1  22.8   9.1e-08   9.3e-05     700     924 ..      56     272 ..      19     303 .. 0.54

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9.1e-08
    TIGR02168 700 kelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaal.ekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelre 924
                  k l++  k   + ee +++l++++++ e+ ls+++ ++++l++  e   + +++     + +ee+++ le++ ++ e+ + ++ e+ +   ea+ +++ ++ ++++e ++  ++e+++lk+++++  e+le+  +e++a+ + + e+le + + l+e+ +++++ +++l++++++l+e+l  l+++++++  +++e++++ +el+e+ r++ k+ ++l+++ +++++
  MMETSP1174-20130828|18071_1  56 KSLTMQLK--MKDEEYVRSLKQQSDDVEELLSRMRRDFAELRQDYEVELDSIED-----AFFEERKQLLEANKDQIESMFkDRREAALGCMEAKQKKQDRNQNEIDELIRHDHEEYNKLKIKLEQDIETLEQQLEEMHATyQLNTEKLEYNYRVLTERNSENNSTMTQLKRKQNRLKETLSTLQQRYREM--DVRERKKN-DELTEDYRRMTKQYNNLQAKFKAAET 272
                  22211111..12223345555555555555555555555555544433333322.....22333333333333333333324555555556666666666666666666666666666666666666666555555544414456667777777777777777777777777777777777777777433..33333333.55666666666666666666665554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  24.8   2.4e-06    0.0024     694     924 ..      48     278 ..      15     308 .. 0.55

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-06
    TIGR02169 694 lqselrriekrldelssklsdaekkieeiekeleqleee.eeklkerleeleeklseleeeleekk.eelkeleaeieeleeklaklkealedleaelseekieeiee....elekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelk 924
                  l s+ + +++   +l+ k ++  +++++ + ++e+l ++ ++ ++e  ++ e +l+++e++  e++ + l++++ +ie++ ++  +      + ++++++ + +ei+e      e+ ++   ++e+ +e +e++l++ +   +  + + ++l+ + + l+e+++e++ ++ +lk k + l+e l  l+++ re++ +    +k+ +el +++r++ k++++l+a+ + +++  k++ 
  MMETSP1174-20130828|18071_1  48 LESKDALVKSLTMQLKMKDEEYVRSLKQQSDDVEELLSRmRRDFAELRQDYEVELDSIEDAFFEERkQLLEANKDQIESMFKDRREAALGCMEAKQKKQDRNQNEIDElirhDHEEYNKLKIKLEQDIETLEQQLEEMH---ATYQLNTEKLEYNYRVLTERNSENNSTMTQLKRKQNRLKETLSTLQQRYREMDVRE---RKKNDELTEDYRRMTKQYNNLQAKFKAAETFDKKRY 278
                  3444444555666666666666777777777776655441444555566777777777777654440444555566666655555554444444444444444444330000344444444555566666666666666...44444555566666667777777777777777777777777777776666665443...234444555555555555555555555444444443 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.017        17      33      76 ..      61     101 ..      42     119 .. 0.79
   2 ?    4.6   1.1    0.0078         8      47      87 ..     148     188 ..     117     191 .. 0.84
   3 ?    8.2   2.5   0.00062      0.63      19      85 ..     191     257 ..     186     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.017
    TIGR01617  33 edtitreelkeilslledgidkllntrgesyraLdtkeklkels 76 
                  + ++++ee    l++ +d++++ll++  + + +L  ++   e++
  MMETSP1174-20130828|18071_1  61 QLKMKDEEYVRSLKQQSDDVEELLSRMRRDFAELR-QD--YEVE 101
                  567888999999*******************9999.32..3333 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0078
    TIGR01617  47 lledgidkllntrgesyraLdtkeklkelsdkealellaed 87 
                  + +++id+l+    e+y +L+ k +++  + ++ le++ + 
  MMETSP1174-20130828|18071_1 148 RNQNEIDELIRHDHEEYNKLKIKLEQDIETLEQQLEEMHAT 188
                  66789****************88778888999999999875 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00062
    TIGR01617  19 LeangieyeeidlkedtitreelkeilslledgidkllntrgesyraLdtkeklkelsdkealella 85 
                  L+ +++ey+ + l+e + +++   + l++ ++ +++ l+t  + yr++d+ e++k+ +  e    ++
  MMETSP1174-20130828|18071_1 191 LNTEKLEYNYRVLTERNSENNSTMTQLKRKQNRLKETLSTLQQRYREMDVRERKKNDELTEDYRRMT 257
                  7889*********************************************888888766666655555 PP

>> TIGR01687  moaD_arch: MoaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.15   1.5e+02      24      45 ..      77      98 ..      57     130 .. 0.72
   2 ?    5.7   1.3    0.0045       4.6      13      64 ..     164     210 ..     159     220 .. 0.71
   3 ?    2.8   0.4     0.035        36      20      56 ..     217     253 ..     207     272 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.15
    TIGR01687 24 gktvedlleelkarypkekkel 45
                  + ve+ll+ + + + + +++ 
  MMETSP1174-20130828|18071_1 77 SDDVEELLSRMRRDFAELRQDY 98
                 5678888888888887766643 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0045
    TIGR01687  13 tgkkeeeielegktvedlleelkarypkekkelfkegaelvkeviilvNgrn 64 
                   +k ++++e +++t+e+ lee+ a y+ + ++l ++       v+  +N  n
  MMETSP1174-20130828|18071_1 164 YNKLKIKLEQDIETLEQQLEEMHATYQLNTEKLEYN-----YRVLTERNSEN 210
                  57788999999***************9777777555.....33444455444 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.035
    TIGR01687  20 ielegktvedlleelkarypkekkelfkegaelvkev 56 
                  +  + +++++ l++l++ry ++  +  k++ el++++
  MMETSP1174-20130828|18071_1 217 LKRKQNRLKETLSTLQQRYREMDVRERKKNDELTEDY 253
                  4555789999*********977654444433444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       685  (0.166992); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.18s 00:00:00.75 Elapsed: 00:00:00.54
# Mc/sec: 784.60
//
Query:       MMETSP1174-20130828|18073_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 678.15
//
Query:       MMETSP1174-20130828|18070_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   34.6   0.1      2e-05   21.8   0.0    2.1  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.3e-06     0.018     144     193 ..       4      53 ..       1      91 [. 0.74
   2 !   21.8   0.0     5e-09     2e-05     132     191 ..      75     142 ..      64     146 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.3e-06
    TIGR00601 144 gdsdretlvvGsereetveeimemGyereeverAlRAafnnPdRAveYLl 193
                  ++ +   l + ++ ++ +e +++mG+e ++ erAl  a  + d A+  L 
  MMETSP1174-20130828|18070_1   4 AEPESRKLSASEQVDSRIETLVQMGFEGDKAERALLRANGDWDAAITLLT 53 
                  4455668999999*********************9777777777777665 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 5e-09
    TIGR00601 132 alesedtsaesegdsdre........tlvvGsereetveeimemGyereeverAlRAafnnPdRAveY 191
                  a ++++  ++ + + + +           v +  ++ ++++++mG++ e  e+Al+A+ n+ ++Av  
  MMETSP1174-20130828|18070_1  75 AATTPAVVKPRAKSKEEDhfmaglpaDAPVSAIVDNRIQQMIDMGFDAEDAEAALKASGNDFEKAVHI 142
                  4444444444333233332333344434455667899****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 511.03
//
Query:       MMETSP1174-20130828|18075_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|18076_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   27.6   1.4    3.5e-07   27.3   1.0    1.0  1  TIGR00020 prfB: peptide chain release factor 2
      0.006   12.1   0.7     0.0071   11.9   0.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   1.0   1.7e-10   3.5e-07       4      87 ..      40     123 ..      37     124 .] 0.92

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.7e-10
    TIGR00020   4 selkekleeleerletlkkildleklkarleklekeledpnlWndqekaqkvikeksslkekldkleelkksledlsellelak 87 
                  ++lk ++++ + +++  +k+ldl +l+a+ + le   +++ +W++ + aq + ++ s+ +  l ++e+ + +led ++ + +++
  MMETSP1174-20130828|18076_1  40 TQLKIRMKDAAGNIQRNTKMLDLTQLRAEANDLETTSSQEGFWDNAQEAQGTLQQLSRTEGILARVEKWNTQLEDCETAVSILE 123
                  566778888888999999**********************************************************99988875 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   3.4e-06    0.0071     751     826 ..      36     113 ..      30     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.4e-06
    TIGR02169 751 eeeleekkeelkeleaeieelee..klaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle 826
                  + ++++ k ++k+ + +i++ ++  +l +l+++ +dle   s+e +    +e++   +++sr e++l+ +e+   +le
  MMETSP1174-20130828|18076_1  36 STDITQLKIRMKDAAGNIQRNTKmlDLTQLRAEANDLETTSSQEGFWDNAQEAQGTLQQLSRTEGILARVEKWNTQLE 113
                  6678889999999999999866422889*****************9999999*****************998665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|18078_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|18080_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.2   0.0      0.058   10.7   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.044   11.4   0.0       0.08   10.6   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.8e-05     0.058      88     147 ..     134     197 ..     122     236 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.8e-05
    TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlk.varkNakrlglke....veflksdl 147
                  +  ++lDlg+G G  ++ ++++ ++a+v  +D++e+ l+ v+  N+  +   +    ++ + +d+
  MMETSP1174-20130828|18080_1 134 AIESCLDLGCGHGLTGIYVLSR-SEAQVCFSDFNEDVLRhVTWPNVLMNVTGDrrfnATYFAGDW 197
                  45689**************987.99**********998624455666555544455566666666 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.9e-05      0.08      32      74 ..     132     173 ..     112     203 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.9e-05
    TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqa 74 
                  ++  ++ Ld+GcG G++   +l+r + a++ + D+ e  l+++
  MMETSP1174-20130828|18080_1 132 NRAIESCLDLGCGHGLTGIYVLSRSE-AQVCFSDFNEDVLRHV 173
                  4555799********66666666655.559*****99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1218.96
//
Query:       MMETSP1174-20130828|18083_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-20   71.3   0.7    1.8e-20   71.2   0.5    1.0  1  TIGR00886 2A0108: nitrite transporter
      0.002   14.9   0.0     0.0021   14.9   0.0    1.0  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.5   8.9e-24   1.8e-20       1      69 [.      39     106 ..      39     107 .] 0.96

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 8.9e-24
    TIGR00886   1 raLflswlafflsFlvWfalspLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkt 69 
                  r ++++w++ff +F+ Wfal+pL+  ++ edl+L++++l++++++ v+at+++R+ +g+l+d++Gp+++
  MMETSP1174-20130828|18083_1  39 RSFHFAWMSFFFAFIGWFALAPLGAVLM-EDLNLKQEDLFTANITSVAATILARFTVGPLCDRYGPKHV 106
                  78***********************665.**************************************86 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06    0.0021     233     317 ..      21     106 ..       4     107 .] 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
    TIGR00895 233 ekkkrsvvkllfkgk.lakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvl 317
                  +  k s +k+l       ++  + w+++f+  ++ ++l+    +L+ ++  +++   ++ +   ++ +l+ + +g l dr+gpk++
  MMETSP1174-20130828|18083_1  21 QGYKASQMKILSCSMpHMRSFHFAWMSFFFAFIGWFALAPLGAVLMEDLNLKQEDLFTANITSVAATILARFTVGPLCDRYGPKHV 106
                  444444444443333034555678***************9999****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 588.45
//
Query:       MMETSP1174-20130828|18089_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|18090_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 485.38
//
Query:       MMETSP1174-20130828|18091_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 380.44
//
Query:       MMETSP1174-20130828|18094_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|18088_1  [L=1460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.17s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 3932.74
//
Query:       MMETSP1174-20130828|18096_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1174-20130828|18097_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|18098_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.42
# Mc/sec: 163.42
//
Query:       MMETSP1174-20130828|18099_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|18104_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 242.57
//
Query:       MMETSP1174-20130828|18106_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    8.1   9.7       0.41    7.5   6.7    1.2  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family
       0.33    7.0   9.9       0.41    6.7   6.8    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.7    0.0002      0.41      18     139 ..     207     334 ..     202     335 .] 0.78

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0002
    TIGR01541  18 lnaaeekvlasrkdevkaleklekl....eeakqkalellekla..eaekse..raqykrqldalGlgdkqrerleerlqierkfaeqqrdlkkaikakgeagsdeykeqlaalkaalnealaelkdyya 139
                  + a ++k+l ++++e +a + ++ +      a + a+ ++ ++    ++++   + q+    + + l+ ++r +  + ++i++ f+ ++++++ +  + +e + +  +e+ a ++ +   ++++  +++ 
  MMETSP1174-20130828|18106_1 207 IEAKKKKRLEKKRQEEQAASVVKLQshlrGTAGREATRMRRQIRmeRYHNDCayKIQHIWHNHSVELKRRARKEKSASTSIQNAFRRMNTNKQLD--KWKELTVTAKREADAVVRMQSLIRMQQTRATFR 334
                  567899*************9999998896445555777777655004444431144555667999*********************998866655..778999999999999999999999999999886 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.8    0.0002      0.41     143     326 ..     110     328 ..     106     334 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0002
    TIGR00934 143 srrnfklrrtktllereledrtetkvrtrtq...vslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvk......................sdtsadesisslrfdeskekkkstrvps.ekf.akrresrdidpedlyrsimmlqekheatakirdkise.anslaaesdeessesrriqekikrrlstssiekns...............qqnltrlak 326
                  ++ +  l+++ +  ++e+ +r   +  +r +   ++ ++ +a  + f ++   G++++ ++  + + +      +                        t + + i++++ +  ++k+++++++s  k  ++ r++ + +++ + r i m   +++   ki++  ++ + +l+ + ++e+s s+ iq+  +r  ++++++k +                q+l r+++
  MMETSP1174-20130828|18106_1 110 AKARLRLNKSLHEEREEFMKRLSLERDGRLNselTAATHIQALFRGFTKRPGDGDIKRSKN--KEPRE------NrdtdyvamlqdldellglasipGVTLTPPRIEAKKKKRLEKKRQEEQAASvVKLqSHLRGTAGREATRMRRQIRMERYHNDCAYKIQHIWHNhSVELKRRARKEKSASTSIQNAFRRMNTNKQLDKWKeltvtakreadavvrMQSLIRMQQ 328
                  5667777888888888888887777777744345555566666666666666665554444..22222......22333457888888888888887667777788877777777766665554314441456899999*************999999999998544144566667777799999***************995344444333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 902.37
//
Query:       MMETSP1174-20130828|18108_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   31.5   0.0    3.2e-08   30.6   0.0    1.6  1  TIGR00487 IF-2: translation initiation factor IF-2
    2.4e-07   27.4   0.0    3.5e-07   26.8   0.0    1.1  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.7e-07   28.4   0.0    5.5e-07   27.3   0.0    1.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0036   13.9   0.0     0.0047   13.5   0.0    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
     0.0039   13.3   0.0     0.0047   13.0   0.0    1.1  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
     0.0074   13.4   0.0       0.01   12.9   0.0    1.2  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.7e-11   3.2e-08      81     126 ..     108     157 ..      11     163 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.7e-11
    TIGR00487  81 dkkeerpPvvtimGhvDhGktsLLdsir.kt...kvaegeaGGitqhiGa 126
                  ++     Pv+ ++Gh DhGkt+LLd    +t    v+e+e+ Gitq+i  
  MMETSP1174-20130828|18108_1 108 SSTDGAVPVIVLLGHYDHGKTTLLDAFLgDTgspPVTESESEGITQEIRT 157
                  4566678******************8642332227************965 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.1e-10   3.5e-07       4      46 ..     114     160 ..     113     163 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 5.1e-10
    TIGR00491   4 sPivavlGhvdhGkttlldkirktr....vakreaGgitqhiGasei 46 
                   P++++lGh dhGkttlld   +      v++ e+ gitq+i + ++
  MMETSP1174-20130828|18108_1 114 VPVIVLLGHYDHGKTTLLDAFLGDTgsppVTESESEGITQEIRTRFV 160
                  59*****************987643233499***********88776 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.1   1.4e+03      90      99 ..      24      33 ..       7      43 .. 0.50
   2 !   27.3   0.0   8.1e-10   5.5e-07       5      45 ..     116     159 ..     113     163 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.1
    TIGR00231 90 vldveeglek 99
                 + d+ ++l+k
  MMETSP1174-20130828|18108_1 24 LRDLAKKLKK 33
                 2444444433 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 8.1e-10
    TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteq 45 
                   iv++Gh d+GK+tLl+ +l++++s+  +++   g+t++++t+ 
  MMETSP1174-20130828|18108_1 116 VIVLLGHYDHGKTTLLDAFLGDTGSPPVTESeseGITQEIRTRF 159
                  79**********************9755544457*****99875 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.9e-06    0.0047       2      22 ..     116     136 ..     115     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.9e-06
    TIGR00475   2 iiataGHvDHGKttLlkaltg 22 
                  +i++ GH DHGKttLl a+ g
  MMETSP1174-20130828|18108_1 116 VIVLLGHYDHGKTTLLDAFLG 136
                  5899************99765 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.9e-06    0.0047       4      27 ..     117     140 ..     114     155 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.9e-06
    TIGR01394   4 iaiiahvDhGkttlvDklLkqsgv 27 
                  i ++ h DhGkttl+D++L ++g 
  MMETSP1174-20130828|18108_1 117 IVLLGHYDHGKTTLLDAFLGDTGS 140
                  66789*************988774 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05      0.01       8      29 ..     117     138 ..     111     161 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
    TIGR03680   8 iglvGhvDhGkttlvkaltGvw 29 
                  i l+Gh DhGkttl  a+ G  
  MMETSP1174-20130828|18108_1 117 IVLLGHYDHGKTTLLDAFLGDT 138
                  7899************997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 585.03
//
Query:       MMETSP1174-20130828|18110_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|18109_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|18113_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 435.96
//
Query:       MMETSP1174-20130828|18112_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.2   0.3      0.047   11.3   0.2    1.5  1  TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family


Domain annotation for each model (and alignments):
>> TIGR01168  YSIRK_signal: gram-positive signal peptide, YSIRK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.1e-05     0.047      20      34 ..     132     148 ..     129     153 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR01168  20 GvaSVlvaslffgg..q 34 
                  G aSV+vaslf++   q
  MMETSP1174-20130828|18112_1 132 GGASVAVASLFLSMvqQ 148
                  669******99998333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 734.86
//
Query:       MMETSP1174-20130828|18114_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   14.9   2.7     0.0013   14.6   1.9    1.0  1  TIGR00422 valS: valine--tRNA ligase
     0.0025   14.0   7.3     0.0031   13.7   5.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
  ------ inclusion threshold ------
      0.026   13.0   6.4       0.11   10.9   4.5    2.1  1  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
       0.13    7.7  13.2       0.18    7.3   9.2    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.9   1.3e-06    0.0013     719     852 ..      61     201 ..      30     206 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.3e-06
    TIGR00422 719 vdekaekefelvkeiikevRnl.kaesnialnaklevllkleeaeeeaerlkksaedlkklikleevevv...sekee..eeeavakvvpevevlipvkelenkake.laklqkelekekkekeriekkleneafvkkapk 852
                    e+a++++el+ eii ++R+  k+ +++ ++++++ + +l +++e+ ++l+++ +dl++     +  ++   se++    + +   v  ev  ++++ +l + +++ l +l++el+++++ ++  +kk++ e+f + ap 
  MMETSP1174-20130828|18114_1  61 ALEEANENLELAQEIIDDLRRThKERARLMKSREVQSSRQLATTQEKLTKLQERFTDLEQRSAHGKYALNfldSETSGkpSRFRQRVVLREVTSHGDLPGLVELQQRlLEQLKRELSEQQATNQALRKKIAAEEFAAAAPM 201
                  45789999***********9872556789999*******9999999999****999999877665544431112233222455566678899999999988777665167899999********************99986 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   5.0   3.1e-06    0.0031     391     533 ..      53     195 ..      43     200 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.1e-06
    TIGR03346 391 eaaarlrmeidskPeeldeldrri...iqlkierealkkekdeaskerleklekelaeleeesaeleekwkaekekie...kvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekekeekkekllkeevteeei 533
                  ea+  l + ++   e+l+  +  i    + + er+ l k ++ +s ++l++ +++l++l+e+ ++le++  + k +++   + ++ k    + ++ l + + +gdl  + el+   l++l++el+e++++++       l++++ +ee 
  MMETSP1174-20130828|18114_1  53 EATKALSVALEEANENLELAQEIIddlRRTHKERARLMKSREVQSSRQLATTQEKLTKLQERFTDLEQRSAHGKYALNfldSETSGKPSRFRQRVVLREVTSHGDLPGLVELQQRLLEQLKRELSEQQATNQA------LRKKIAAEEF 195
                  67777777777777777644444400044567999************************************99988761115556677777889999***************************998876655......4555555554 PP

>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.5   0.00011      0.11      10      60 ..     178     234 ..     167     236 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00011
    TIGR02419  10 eeelleaalaaarakkrveaas......llvCeeCgepIPeaRrealPgvtrCveCQ 60 
                  e++  ++al+++ a++++ aa+      +  C eCge+ P+   e  Pg+++C  C 
  MMETSP1174-20130828|18114_1 178 EQQATNQALRKKIAAEEFAAAApmrrhpEPPCGECGEACPKCTYENKPGASTCEMCR 234
                  3444555555555555533333333334788***********************996 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.2   0.00017      0.18     678     825 ..      52     194 ..      31     205 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00017
    TIGR02168 678 kkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaeke 825
                  +++ + l+  +ee++e+++ +++ +++l+++++e   +++ +++++ +++r+l+ ++++l +l+++   le+r a+ + +l+ l+ e + + ++  +      +  +   +l   +e +++ l++l+++lse++a  ++l++++a +e
  MMETSP1174-20130828|18114_1  52 EEATKALSVALEEANENLELAQEIIDDLRRTHKE---RARLMKSREVQSSRQLATTQEKLTKLQERFTDLEQRSAHGKYALNFLDSETSGKPSRFRQRV--VLREVTSHGDLPGLVELQQRLLEQLKRELSEQQATNQALRKKIAAEE 194
                  2333333344444444444444444444443333...33555666666667777777777777777777777777777777777776666666555543..33333444566666666666666666666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.46
# Mc/sec: 809.15
//
Query:       MMETSP1174-20130828|18118_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 383.97
//
Query:       MMETSP1174-20130828|18121_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 376.56
//
Query:       MMETSP1174-20130828|18116_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 2136.97
//
Query:       MMETSP1174-20130828|18123_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 750.45
//
Query:       MMETSP1174-20130828|18126_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1358.71
//
Query:       MMETSP1174-20130828|18128_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|18129_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1004.82
//
Query:       MMETSP1174-20130828|18132_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1411.88
//
Query:       MMETSP1174-20130828|18137_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|18136_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-59  197.8   0.6    5.6e-59  197.6   0.4    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.9e-54  181.4   0.9    9.4e-54  180.2   0.6    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    8.5e-51  170.8   1.4      1e-50  170.5   1.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.3e-42  143.9   4.8      1e-40  137.7   3.4    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.6e-39  133.0   1.7    7.4e-39  131.5   1.2    1.6  1  TIGR02415 23BDH: acetoin reductases
    5.8e-39  131.8   3.1      7e-39  131.5   2.2    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    6.5e-36  121.7   1.9    7.5e-36  121.5   1.3    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    6.2e-35  118.7   2.1    7.5e-35  118.4   1.4    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.3e-30  102.9   3.7    4.3e-30  102.5   2.6    1.3  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.4e-19   68.2   0.3    1.7e-19   67.9   0.2    1.0  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    4.8e-11   40.1   2.1    5.3e-06   23.5   0.0    2.4  2  TIGR02685 pter_reduc_Leis: pteridine reductase
      6e-06   23.8   0.2    1.1e-05   22.9   0.1    1.5  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    6.9e-05   20.2   1.1     0.0023   15.2   0.1    2.2  2  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.4   1.8e-61   5.6e-59       1     237 [.      23     259 ..      23     261 .. 0.93

  Alignments for each domain:
  == domain 1    score: 197.6 bits;  conditional E-value: 1.8e-61
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitr.DklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElas....rnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                  a+vtGa++giG a+a++l ++g++v ++++ + +++e++a+++++    ++  ++dv+d+++v+e  ++++++lg idilv++AGi+  ++   +   e+w++v++vnL+gvfn+ +av+  m+++++Gr++n++s++g  Gn++ + Y+asKaG+i+ltkslakE+a      +i vn+++P   +t + +++s+   + +l++ip +r+ +++eva++va+L+s+e s+ tG+ + ++GG
  MMETSP1174-20130828|18136_1  23 AIVTGAAQGIGLAVANRLVESGVSVSLWDH-DRTALETTAATFSN----SSFEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGcNAPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADleggGSIAVNCITPAAARTRIFDQMSQAHIDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  79**************************76.44557777777776....578899*******************************9725568899**********************************************************************986222257******************************************************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.6     3e-56   9.4e-54       2     251 ..      21     259 ..      20     262 .. 0.94

  Alignments for each domain:
  == domain 1    score: 180.2 bits;  conditional E-value: 3e-56
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhv.apieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetg....itanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgG 251
                  ++a+vtGaa Gigla+a++l++ G++v + d +  a+e++a++ +++++ev    +dvt++++++++ + +++++g++diLv  AGi    ap  e+p e+++++++vnl++ f   ra++p m +q++Gr++n+as+ g ++ +  saY a+K g++ ltK+lA+E+A+ +    i +n+i P+  rt      i dq+ + +i       + +l+k p++rf++v+eva+++++l+s++    tG+a+ l+gG
  MMETSP1174-20130828|18136_1  21 RTAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRTALETTAATFSNSSFEV----VDVTDAKAVEESAASTNKALGAIDILVCSAGISGCnAPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLEgggsIAVNCITPAAARTR-----IFDQMSQAHI-------DYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  89************************************9999999999886....7*******************************96527999**************************************************************************9744455*********99986.....6788888777.......56****************************************9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   1.0   3.2e-53     1e-50       1     240 [.      21     260 ..      21     262 .. 0.89

  Alignments for each domain:
  == domain 1    score: 170.5 bits;  conditional E-value: 3.2e-53
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitr.davfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakk....gvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                  r a+vtG+ +GiG a+++rl++ G+ v       ++r++  + +  ++++ + v  +dv++ ++ ++  a+ +++lG +d+lv +aGi   +a       e+W+ v+d+nln+vfn  r v+  mle+++Gr++n++s+ G+ G    + ysa+kaG+i +tk+la+e+a      +++vn i+P    t +  ++ +  ++ + ++iP +r+   +e+a++va+l+see ++ tG+ +++ GG+
  MMETSP1174-20130828|18136_1  21 RTAIVTGAAQGIGLAVANRLVESGVSVSLWD---HDRTALETTAATFSNSSFEV--VDVTDAKAVEESAASTNKALGAIDILVCSAGISGcNAPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLegggSIAVNCITPAAARTRIFDQMSQAHIDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGGR 260
                  679*********************9985432...33333333444555555555..699*****************************862556778999**********************************************************************8533336******************************************************************97 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   3.4   3.3e-43     1e-40       1     263 [.      18     259 ..      18     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 3.3e-43
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsy.grafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeyg....irvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaG 263
                  l+G+ a++tGaa+G G a a rl + G  +   d               r  l++ta++  +       +++dv + +++++  +++ + +G +d++v  aG+ +  ++++e   e+W+ v+dvnl+Gv+++ +av+P ++e+k  G ++ v+s ag  + p+ + y+a+k G+++ltk+la+e a+ +    i vn i P + +t++ +   m ++       +   l++ p + ++++++va++vawl+s+e  + tG+   +  G
  MMETSP1174-20130828|18136_1  18 LQGRTAIVTGAAQGIGLAVANRLVESGVSVSLWDH-------------DRTALETTAATFSNSS----FEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGCnAPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQK-YGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLEgggsIAVNCITPAAARTRIFD--QMSQAH------IDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  79*************************76655542.............2455888888887665....5568999****************************986378***********************************.78999************************************9854555**************998..444433......334578899999************************98876665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   1.2   2.3e-41   7.4e-39       1     250 [.      21     259 ..      21     262 .. 0.90

  Alignments for each domain:
  == domain 1    score: 131.5 bits;  conditional E-value: 2.3e-41
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvt.pileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakk....gitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGG 250
                  ++a+vtGaaqGiG a+a+rL++ G++v + d +  ++  ta +++++ +     ++dv+d ++vee   ++ + lG +d+lv  aG++  + p  e   ee +++ +vn++gv+     a+  +  +++ G+++n asiag+eg+p+ says++k  v +lt++ ake a+      i+vn+ +P  ++t + +++ ++           +++++ s+i   r    ++va++v++l se+  + tG +  + GG
  MMETSP1174-20130828|18136_1  21 RTAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRTALETTAATFSNSSF----EVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGCNaPTWEYPLEEWQRVMDVNLNGVFN-CNRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLegggSIAVNCITPAAARTRIFDQMSQA-----------HIDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  69******************************99999999999987765....568*******************************97653899*****************965.66677788888999****************************************85333259***********9988876543...........5678999******************************99877777 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   2.2   2.2e-41     7e-39       1     248 [.      18     260 ..      18     262 .. 0.91

  Alignments for each domain:
  == domain 1    score: 131.5 bits;  conditional E-value: 2.2e-41
    TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpfl.ktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelar....hgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                  l++++aivtg + gig a+  r+ e g  v+++d ++ a e+ aa+  ++        vd+td ++v+ + a++++alg +d+lv  ag    ++ + +    ew+r++ +nl g +    av++ m+e+k gr+vn+as a++ g    + y+a k g++a++k+la+e a      +i+vn + p  + t +++++++        i+ +   ip  r+ + +++a  +++l+s++ +f tg  + +sgg 
  MMETSP1174-20130828|18136_1  18 LQGRTAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRTALETTAATFSNSS----FEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGCNAPTwEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADleggGSIAVNCITPAAARTRIFDQMSQAH------IDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGGR 260
                  6899***************************************99887654....4469******************************998876651555689*******************************************************************973222469***************9987643......45566789***********************************95 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   1.3   2.4e-38   7.5e-36       2     237 ..      24     259 ..      23     261 .. 0.89

  Alignments for each domain:
  == domain 1    score: 121.5 bits;  conditional E-value: 2.4e-38
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafp.alseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakr....kitvnciapglidtemvaevek.dlkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvngg 237
                  +vtga++gig a+a++l  +g  +++  + dr++ e+++a+     +n+++   dv+d +av e   +  ++ ga   +v +agi+  +a       e+w+ v++ nl+g +n  +  vmp +  +k gr++ +as++g  gn     ysa+kag+i  tk+la e a+      i+vnci+p    t + +++ + +++  l+ +p +r  + +eva+++a+l s++ ++ t     + gg
  MMETSP1174-20130828|18136_1  24 IVTGAAQGIGLAVANRLVESGVSVSLWDH-DRTALETTAAT----FSNSSFEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGCNAPTwEYPLEEWQRVMDVNLNGVFNC-NRAVMPYMLEQKYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLegggSIAVNCITPAAARTRIFDQMSQaHIDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  79***********************9866.67777766654....567777888***********999999**************9988743156779***************7.5679**9999*****************************************998522237****************987661588999******************************999998888 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   1.4   2.4e-37   7.5e-35       2     244 ..      17     259 ..      16     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 2.4e-37
    TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealG.rkflslkadladeeaakalvdeaveeagkidilvnnaGiirre.davefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakk....ginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                  +l+G++a+vtGa +G+G ++a  l e+G     v+  + + t+ + +a    + +   +d++d +a+++  +++ ++ g idilv  aGi   +  + e++ ++w+ v++vnl+ vf   +av   +l+q   g+++n+as+    G  + ++y+ask +v+ ltk+la+e a      +i vn i+P    t   +++   ++  +++l++iP  r+   +++a  + +l s+  ++ +G ++ + GG
  MMETSP1174-20130828|18136_1  17 NLQGRTAIVTGAAQGIGLAVANRLVESGVS---VSLWDHDRTALETTAATfSNSSFEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISGCNaPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQK-YGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLegggSIAVNCITPAAARTRIFDQMS--QAHIDYMLSKIPRNRFLDVNEVASMVAWLCSEENSFTTGSAFDLSGG 259
                  79**************************65...5556666665444444303333445799999999999999999**************97651689******************************997.9***************************************98523326*********99999998875..677899***********************************999998 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   2.6   1.4e-32   4.3e-30     407     599 ..      13     203 ..       2     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 1.4e-32
    TIGR02632 407 PkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGia.vskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielael....girvntvaPdav 599
                   ++ +l +r a+vtG+a GiG +va rlv+ G  v l d d  a+e++aa +       ++   ++dvtd +av+++ a    a G +di+v +aGi+   +p+ e  leeW++ +d++  G f   r  +  + +q+  g +v +as  +   ++na+aysa+ka  + l + la e a+l     i vn ++P+a 
  MMETSP1174-20130828|18136_1  13 SNQINLQGRTAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRTALETTAATFS------NSSFEVVDVTDAKAVEESAASTNKALGAIDILVCSAGISgCNAPTWEYPLEEWQRVMDVNLNGVFNCNRAVMPYMLEQKY-GRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLegggSIAVNCITPAAA 203
                  4566899********************************************99......3334468*******************************93467899999****************************997.589***********************************998754334********985 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.2   5.4e-22   1.7e-19       2     214 ..      17     230 ..      16     252 .. 0.90

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 5.4e-22
    TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasr.gsviftvsnagfypngggalytaakhavvglvkelayela.....pyvrvngvapgglstdlrglksldladksissvplgdllk 214
                  +l+++ ++vtg a g+g a+ +r v  g  v++ d+    le   a+ ++    v+ dv   +  +e++a   +a+g +d+l+  agi   +++  + p +     ++ v+++n+ g + + +a++p++++ + g v+   s ag   n   + y+a+k  v+ l k la e a       + vn ++p    t +    s    d  +s++p + +l+
  MMETSP1174-20130828|18136_1  17 NLQGRTAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRTALETTAATFSNSSFEVV-DVTDAKAVEESAASTNKALGAIDILVCSAGISGCNAPTWEYPLE----EWQRVMDVNLNGVFNCNRAVMPYMLEQKyGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETAdleggGSIAVNCITPAAARTRIFDQMSQAHIDYMLSKIPRNRFLD 230
                  7999*********************************************9999886.77777888888999999************************975....5788999***************987665388999999****************************98762222268********************9999********988774 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.6   3.8e-06    0.0012       3      92 ..      22     101 ..      20     156 .. 0.61
   2 !   23.5   0.0   1.7e-08   5.3e-06     155     262 ..     148     260 ..     142     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.8e-06
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnna 92 
                  +a+vtGaa+ iG ++a +l + G  v l  +    a ++ aa++    +ns+  v  d++ ++++    ee   ++ +a G  d+lv  a
  MMETSP1174-20130828|18136_1  22 TAIVTGAAQGIGLAVANRLVESGVSVSLWDHDRT-ALETTAATF----SNSSFEV-VDVTDAKAV----EESAASTNKALGAIDILVCSA 101
                  69*************************9877654.334444443....3333333.244443332....333445555566666666555 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.7e-08
    TIGR02685 155 ivnlvdamtdqpllgfslytmakealeGltrsaalelaslq....irvngvapGls..llpdampeevkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGl 262
                  +vn++    +   +  s y+ +k  +  lt+s a e a l+    i vn+++p  +   + d+m++   +    k+p  +     +++a +v++l+s++  + tG+   + GG 
  MMETSP1174-20130828|18136_1 148 VVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKETADLEgggsIAVNCITPAAArtRIFDQMSQAHIDYMLSKIPRNR-FLDVNEVASMVAWLCSEENSFTTGSAFDLSGGR 260
                  677777777777778899********************9844445********876225789********99*****765.577899**********************99995 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.6e-08   1.1e-05       3     118 ..      20     130 ..      18     163 .. 0.80
   2 ?   -1.8   0.0       1.2   3.7e+02     174     212 ..     149     188 ..     140     211 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.6e-08
    TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghf 118
                    t+i+tga+ g+gla a  lve g   v ++  d +++   +  + +++ s+ ++  d++  ++v +  ++ +++  ++d+lvc a +    +    +  ++++  +  n  g f
  MMETSP1174-20130828|18136_1  20 GRTAIVTGAAQGIGLAVANRLVESG---VSVSLWDHDRTALETTAATFSNSSFEVV--DVTDAKAVEESAASTNKALGAIDILVCSAGISGCNAPTWEYPLEEWQRVMDVNLNGVF 130
                  5799*********************...8899999999999999999***999985..788889999999999999999********98765555555555666655555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.2
    TIGR01289 174 aniamidgkefk.aakaykdsklcnmltvrelhrryhdet 212
                  +n+a i gke +  a ay  sk   +  ++ l +   d  
  MMETSP1174-20130828|18136_1 149 VNVASIAGKEGNpNASAYSASKAGVIALTKSLAKETADLE 188
                  5678888888763578999999988888888877666543 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.1e-06    0.0023       3      60 ..      23      75 ..      21     102 .. 0.74
   2 ?    4.1   0.0     0.018       5.7     115     182 ..     119     184 ..     115     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.1e-06
    TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlv 60
                 ++vtGa++G+G ++a++l++     g+ + L   + +aL  + a      s  +vd  
  MMETSP1174-20130828|18136_1 23 AIVTGAAQGIGLAVANRLVE----SGVSVSLWDHDRTALETTAATFSN-SSFEVVDVT 75
                 89****************99....8999***********999998874.333444333 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.018
    TIGR01500 115 qkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLalee 182
                  q+  d n+  +   +  ++  + e       vvn++s++  +  +  + Y aska    + + La e 
  MMETSP1174-20130828|18136_1 119 QRVMDVNLNGVFNCNRAVMPYMLEQ--KYGRVVNVASIAGKEGNPNASAYSASKAGVIALTKSLAKET 184
                  5666667777666666676666533..334699*********************99888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 867.83
//
Query:       MMETSP1174-20130828|18138_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049    9.9   0.0      0.076    9.2   0.0    1.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   1.9e-05     0.076     274     329 ..     161     215 ..     156     228 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 1.9e-05
    TIGR01389 274 dvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillys 329
                  d+ v v t  +G G+d     +v  l  P    +y   aGR GR G +  a+++ +
  MMETSP1174-20130828|18138_1 161 DTPVYVGTERWGRGLDM-RLQYVFMLAPPPTCATYMHLAGRTGRQGAAGSAVTITT 215
                  5678899999*****96.699**************************999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|18141_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 288.73
//
Query:       MMETSP1174-20130828|18140_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 591.31
//
Query:       MMETSP1174-20130828|18142_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 892.06
//
Query:       MMETSP1174-20130828|18139_1  [L=927]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.17s 00:00:00.72 Elapsed: 00:00:00.46
# Mc/sec: 2659.87
//
Query:       MMETSP1174-20130828|18143_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-33  113.7   0.0    1.1e-32  111.4   0.0    1.8  2  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
    3.8e-22   76.6   0.0    2.8e-21   73.8   0.0    1.9  2  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    7.1e-15   52.6   0.0    1.1e-14   51.9   0.0    1.3  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.064        88      38      73 ..       6      41 ..       2      65 .. 0.82
   2 !  111.4   0.0   7.8e-36   1.1e-32      85     300 ..      98     318 ..      84     319 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.064
    TIGR00511 38 aseeefkkelreaakllietrPtavslpnalryvlk 73
                 ++ +e+ ++++ ++  l++++P  +s+ n +r +l 
  MMETSP1174-20130828|18143_1  6 SNCQEMMDHIKRVGAELTDAQPLELSIGNLIRRILF 41
                 5678889999*******************9997664 PP

  == domain 2    score: 111.4 bits;  conditional E-value: 7.8e-36
    TIGR00511  85 eevieradefieklekaleklGeiGakrikdGdvvmthCnseaalsv.iktafeqGkdievivtetrPrkqGhitakelrelGipvtlivdsaaryflkevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllGelveieerdaeevvd...eeelkelg.avkvrnPafdvtPaeyidviitekGliPPesavtvikeelg 300
                  + ++ +++e+++++e+    + e   ++i+d   ++t  +s+   s  + +a +q +  +v+v e+ P   G+  ak+l+  Gi+vt+i dsa+  ++  vdkvv+   a+ anG +i   G  +lalaa+e+ v+v+++   +kl P          e r+++ v++   + ++++l  +++v nPa+d+ P+e i + +t++G + P+ ++ ++ e ++
  MMETSP1174-20130828|18143_1  98 SGIMAQVNELMNEIETVHLTIMEQALNHISDQSLILTFGRSRCVESFfVAAAKNQKRSFQVLVAESAPYYGGQEMAKRLAAKGIDVTVIADSAVFAMMPRVDKVVLPTHAVMANGGLIAPSGGHMLALAAQEHSVPVVCVTGLFKLCPLYPHDLNAFNELRSPASVLSyfdTTNRTRLReDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYH 318
                  56889999**********************************9999725667788889******************************************************************************************9988888899********9632134445554589**********************************99876 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.045        61      38      94 ..       4      62 ..       1      70 [. 0.77
   2 !   73.8   0.0     2e-24   2.8e-21      89     299 ..      99     302 ..      87     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.045
    TIGR00524 38 ktvnveefkeklekaadvllssRPtAvnLsnalervlkalks..sedveevkeslleea 94
                 k  n +e+ ++++++   l+++ P  +++ n + r+l ++++  ++++ + ++ l ++ 
  MMETSP1174-20130828|18143_1  4 KWSNCQEMMDHIKRVGAELTDAQPLELSIGNLIRRILFIIREeyATNLSARDGGLANHN 62
                 56789999999999***********9999999999998876534566666666665555 PP

  == domain 2    score: 73.8 bits;  conditional E-value: 2e-24
    TIGR00524  89 slleeaeelieedletnrkiGengaklikdgdtvlthCnaGslatsdygtAlgvirsawedgkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetGediiiEERdpeEvavv...egvriaplevkvynpAFDitPaelidaiitEkG 299
                   ++ +++el++e ++    i e++++ i d+  +lt+  + +   s +      + +a+++ ++ +v+  E+ P+  G +  a+ l  +gidvt+i Dsav  ++   ++d+v++   ++++ng ++   G  +la++a+e+++p + +  + ++ +      +   E R+p+ v  +   +++   +++++v npA+D +P eli   +t++G
  MMETSP1174-20130828|18143_1  99 GIMAQVNELMNEIETVHLTIMEQALNHISDQSLILTFGRS-RCVESFF------VAAAKNQKRSFQVLVAESAPYYGG-QEMAKRLAAKGIDVTVIADSAVFAMMP--RVDKVVLPTHAVMANGGLIAPSGGHMLALAAQEHSVPVVCVTGLFKLCPLYPHDLNAFNELRSPASVLSYfdtTNRTRLREDAEVLNPAYDFVPPELIALYVTNNG 302
                  578899*******************************999.3333333......456889999*************99.6679******************99999..9**********************************************99999988888999****9976522133566789**********************998 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   8.4e-18   1.1e-14     176     332 ..     147     303 ..     142     306 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 8.4e-18
    TIGR00512 176 rsakekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRdeeEvtkvsg...vriaakgievynpaFDvtPaelitaiitekGv 332
                   +ak++++  +v + E  P+  G ++ a  l+ +gi++t+iaDs++ a++   +vd v+  +  ++anG      G  +la++a++h+vp++ +  l  +        +   E R+++ v++  +    +   ++ ev npa+D +P eli+  +t++G 
  MMETSP1174-20130828|18143_1 147 AAAKNQKRSFQVLVAESAPYYGGQEM-AKRLAAKGIDVTVIADSAVFAMMP--RVDKVVLPTHAVMANGGLIAPSGGHMLALAAQEHSVPVVCVTGLFKLCPLYPHDLNAFNELRSPASVLSYFDttnRTRLREDAEVLNPAYDFVPPELIALYVTNNGG 303
                  57899999************988876.789*******************98..8**************************************99999998888888888899*********99985544445789**********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1248.24
//
Query:       MMETSP1174-20130828|18145_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 975.78
//
Query:       MMETSP1174-20130828|18147_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 242.49
//
Query:       MMETSP1174-20130828|18151_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.57
# Mc/sec: 207.09
//
Query:       MMETSP1174-20130828|18152_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-54  182.9   0.0      2e-54  182.8   0.0    1.0  1  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
  ------ inclusion threshold ------
      0.019   12.3   0.0        0.1    9.9   0.0    1.9  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.8   0.0   9.9e-58     2e-54      51     169 ..       2     120 ..       1     121 [] 0.98

  Alignments for each domain:
  == domain 1    score: 182.8 bits;  conditional E-value: 9.9e-58
    TIGR02821  51 ltcteenflikagaqrlaaelGlalvaPdtsPrkegiageddeydlGkGaGfyvdateePwsahyrmysyvveelpalvaaefPldaerqgitGhsmGGhGalvialknPdlfksvsaf 169
                  ltct+enf+ kaga r+aae+G+alvaPdtsPr++ ++gedd +d+G+GaGfyvdat  Pw+++y m+syv++el++++     +d++r +i+GhsmGGhGal++ +k+P  ++svsaf
  MMETSP1174-20130828|18152_1   2 LTCTDENFVQKAGASRAAAEHGIALVAPDTSPRGADLEGEDDGWDFGTGAGFYVDATASPWNQNYLMESYVTRELREIISSFPTIDSSRVSISGHSMGGHGALTLCFKDPSAWRSVSAF 120
                  9******************************************************************************99888**********************************9 PP

>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     5e-05       0.1      29     123 ..       9     117 ..       3     121 .] 0.57

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5e-05
    TIGR01840  29 svidkgwkaaAdkYgfvvvaPevtssnssnk....Cwdw......fetehr....argtgeveslkqlidavkanysIDpnrvyvtGLSaGggetaVllatypdvfAga 123
                   v ++g + aA + g+++vaP+        +     wd+      + ++      +    e ++ ++l + +     ID  rv ++G S Gg     l    p  + ++
  MMETSP1174-20130828|18152_1   9 FVQKAGASRAAAEHGIALVAPDTSPRGADLEgeddGWDFgtgagfYVDATAspwnQNYLMESYVTRELREIISSFPTIDSSRVSISGHSMGGHGALTLCFKDPSAWRSV 117
                  55567778888888888888876433222222344777622222122222111101222344455555555555668**************998877777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|18153_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|18154_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-11   41.4   0.0    3.9e-11   41.1   0.0    1.2  1  TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase


Domain annotation for each model (and alignments):
>> TIGR02432  lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   9.6e-15   3.9e-11      85     167 ..      60     140 ..      12     142 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 9.6e-15
    TIGR02432  85 elRYkaleelakklkaeviltAHhadDqiEtillrllrgsglkglsglkeirelekkiqivRPLlkiskkeieeylkeeklki 167
                  +lR  +l   a++ +a++++++Hh+dD +Et++l++l + ++k + + ++ +   ++ +++RPL+ ++ k+i +++  ++++i
  MMETSP1174-20130828|18154_1  60 RLRRGILYTCAESIGATKLALGHHSDDAAETLFLNMLHQGQMKAMPA-RYFSDT-RNAHVLRPLIYCEEKDIATFAAAKGFPI 140
                  56777899999**************************9999999998.666655.799******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 940.95
//
Query:       MMETSP1174-20130828|18157_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|18159_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.44
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|18155_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   24.0   0.0    3.6e-06   23.5   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.5e-06   23.9   0.0    5.1e-06   23.3   0.0    1.2  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    5.3e-06   22.2   1.9    8.5e-06   21.6   0.3    1.8  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.6e-09   3.6e-06     256     330 ..     276     349 ..     265     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.6e-09
    TIGR01389 256 aGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                    ls  +R+   e+ ++ +v+v++       Gid  dv  v+ +d+P++ e+y   +GR  R G+   a++l   
  MMETSP1174-20130828|18155_1 276 PALSATQRQSLMERCQKGEVRVLICSDGMSRGID-LDVSLVVNYDVPRHTEAYVHRVGRTARAGRSGSAVTLLHR 349
                  5689999**************************9.59***********************999999888766543 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.8e-09   5.1e-06     258     343 ..     276     360 ..     265     384 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.8e-09
    TIGR00614 258 agleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllv 343
                    l+  +r+++ ++ ++ e++v++       Gi+  dv  v+ y++p++ e+Y   +GR  R g   ++v + + +  +  +rl +
  MMETSP1174-20130828|18155_1 276 PALSATQRQSLMERCQKGEVRVLICSDGMSRGID-LDVSLVVNYDVPRHTEAYVHRVGRTARAGRSGSAVTLLHRGQEKSFSRLRE 360
                  579999********************99999**9.59**********************999999988887766554444444333 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.031        43     116     154 ..       2      39 ..       1      42 [. 0.77
   2 !   21.6   0.3   6.2e-09   8.5e-06     274     355 ..     267     346 ..     260     350 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.031
    TIGR04121 116 diLltTpEslaLllsskdaeklfkdlravvvDElHeLlg 154
                  diL+ Tp  l   l  +  + ++++lr++vvDE   Ll 
  MMETSP1174-20130828|18155_1   2 DILVCTPGRLVDHLE-ATPQFTLQHLRVMVVDEADRLLD 39 
                  689999998865553.34456789*********998875 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.2e-09
    TIGR04121 274 elaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskill 355
                  + a+ ia +  +l+++qR+   +  ++g++r+++c   +  G+D  dv lv++   p+     + R+GR++ +  + s ++l
  MMETSP1174-20130828|18155_1 267 D-ADAIAEFSPALSATQRQSLMERCQKGEVRVLICSDGMSRGIDL-DVSLVVNYDVPRHTEAYVHRVGRTARAGRSGSAVTL 346
                  4.788999999*********************************7.8**********************9988877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1408.98
//
Query:       MMETSP1174-20130828|18161_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.0   0.0      0.087    8.6   0.0    2.1  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   2.1e-05     0.087     122     158 ..      60      96 ..      42     103 .. 0.85
   2 !    7.8   0.0   3.9e-05      0.16     132     160 ..     103     131 ..      98     146 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 2.1e-05
    TIGR00870 122 destseftkgitalilAihkqnyeivklLlekgasve 158
                  + + ++ ++g t+l+ A  +  +e+v+ L+  ga+v 
  MMETSP1174-20130828|18161_1  60 ELKRGDSQFGGTPLHWACLNGHVEVVNELISAGATVD 96 
                  556778999**************************97 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 3.9e-05
    TIGR00870 132 italilAihkqnyeivklLlekgasvear 160
                   t+l+lA     + +v+ Ll  ga++++r
  MMETSP1174-20130828|18161_1 103 ATPLHLACDSGHVGVVQTLLRAGAELNVR 131
                  69************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 796.49
//
Query:       MMETSP1174-20130828|18162_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 655.39
//
Query:       MMETSP1174-20130828|18164_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|18167_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.7   0.0     0.0014   15.6   0.0    1.0  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
  ------ inclusion threshold ------
      0.034   11.1   0.1      0.041   10.8   0.1    1.0  1  TIGR00299 TIGR00299: TIGR00299 family protein


Domain annotation for each model (and alignments):
>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.1e-07    0.0014     165     232 ..       9      78 ..       5      83 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.1e-07
    TIGR03201 165 kkgdlviviGvGGvGgyavqvakalGaavvaidideeklemvkkaGadlilnpkdi..sarevkkaikaf 232
                   ++d+    GvG   ++a +va++l a+v a     ekle +++   +l+  +k+    a +vk++ +  
  MMETSP1174-20130828|18167_1   9 CEDDFRRSGGVGAQTSHASDVASTLNATVSAFVDRGEKLEEMQNKTENLMHSAKEYrkNAAKVKENREKA 78 
                  56666666788888899*************998889******************9855677788776655 PP

>> TIGR00299  TIGR00299: TIGR00299 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     2e-05     0.041      14      58 ..      35      80 ..      28      82 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
    TIGR00299 14 milgalidlGvskeelaevlkklgld.develsvkkvkkagiaatk 58
                   ++a++d G + ee++++ ++l  + +e++ ++ kvk++  +a+k
  MMETSP1174-20130828|18167_1 35 ATVSAFVDRGEKLEEMQNKTENLMHSaKEYRKNAAKVKENREKANK 80
                 579********************98879***********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|18166_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|18168_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.48
# Mc/sec: 258.48
//
Query:       MMETSP1174-20130828|18170_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 934.34
//
Query:       MMETSP1174-20130828|18174_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 243.50
//
Query:       MMETSP1174-20130828|18173_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1271.60
//
Query:       MMETSP1174-20130828|18177_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 723.50
//
Query:       MMETSP1174-20130828|18179_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 295.98
//
Query:       MMETSP1174-20130828|18180_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|18183_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|18185_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.4    3.2   9.8          8    3.3   6.8    1.0  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family


Domain annotation for each model (and alignments):
>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.8     0.002         8      63     108 ..       4      49 ..       1      66 [] 0.47

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.002
    TIGR01541  63 eraqykrqldalGlgdkqrerleerlqierkfaeqqrdlkkaikak 108
                  +r q +r+ d++  ++  +er eerlq +  +a  qr+l k+   +
  MMETSP1174-20130828|18185_1   4 ARLQKQRDCDGIRKQQEDEERREERLQKKADYAAAQRQLVKEQRDR 49 
                  4445555555555555555555566666666666666555553332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 235.44
//
Query:       MMETSP1174-20130828|18181_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 1847.85
//
Query:       MMETSP1174-20130828|18187_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.40
# Mc/sec: 227.68
//
Query:       MMETSP1174-20130828|18186_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|18188_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.49
# Mc/sec: 328.63
//
Query:       MMETSP1174-20130828|18190_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.2   5.4    2.1e-06   25.1   3.7    1.0  1  TIGR00837 araaP: aromatic amino acid transport protein
  ------ inclusion threshold ------
      0.059   10.2   2.1      0.066   10.1   1.4    1.0  1  TIGR00814 stp: serine transporter


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   3.7     1e-09   2.1e-06      10      93 ..       1      83 [.       1     102 [. 0.90

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1e-09
    TIGR00837 10 viGaGmlalPvstagawfivsllllillwllmllsgllllEvlltyeagaslatlakdllGkkgniiaglsllfvlyiLlyAYi 93
                 +iG+Gml+lP + a a+ i +++l +++++ + +s ++l+ +  ++ a+  + ++a +++G   ++ ++l  l++ ++ ++AY 
  MMETSP1174-20130828|18190_1  1 MIGGGMLSLPFAFAKAGLIGGVILQLCSAAAAWFSLFMLVAAARRTGAR-TYGEVAGRVFGPGLEMTVTLLTLMLTFMTVIAYE 83
                 7************************************999998888765.699*****************99999999999995 PP

>> TIGR00814  stp: serine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4   3.2e-05     0.066      17     109 ..       2      92 ..       1     103 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.2e-05
    TIGR00814  17 iGAGvlflPiqaGlkGlwvlllmaiiaypltylahralakfvlsskesaeditevveeyfGkkaGilitllYFlaivpilliYsvaitntves 109
                  iG G+l lP     +Gl+  ++  +   +++++   +l  + +   + a  + ev    fG    + +tll  +  +++++ Y + +   v+s
  MMETSP1174-20130828|18190_1   2 IGGGMLSLPFAFAKAGLIGGVILQLCSAAAAWFSLFML--VAAARRTGARTYGEVAGRVFGPGLEMTVTLLTLMLTFMTVIAYEILLRDIVTS 92 
                  9*******************************975444..4455666679*********************9999999999998766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|18196_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-20   69.0   0.1    2.5e-19   66.5   0.0    1.8  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.4e-17   61.1   3.2    2.5e-11   41.4   0.0    2.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.7e-09   33.6   0.0    1.3e-07   28.0   0.1    2.0  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    2.1e-06   25.4   0.9      0.042   11.4   0.0    2.9  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.7e-06   25.8   0.4      0.011   14.1   0.0    3.2  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    8.5e-05   20.0   0.2      0.092   10.0   0.1    2.9  3  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO
    0.00022   17.8   0.4      0.035   10.5   0.2    2.0  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0045   14.9   0.0        3.7    5.8   0.0    3.3  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   4.9e-22   2.5e-19     441     639 ..      56     257 ..      53     270 .. 0.90

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 4.9e-22
    TIGR02917 441 yLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkel...epalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkklle.lqpdsalall 639
                   L sg +  a ++ak  ++++p     y  l+ +  +++  ++A + +e+ALk++p +  A+ +LA l  +   +d+ ++ + +vl+ d  +++a+ +Lae+    g+++  +a++ + ++ dp+ +   + +++ +  + ++g  ++ +++ e+a +++p ++ ++  lg a+ +++ l++av  f+ +l+ ++p ++  + 
  MMETSP1174-20130828|18196_1  56 LLSSGHLPAAEKTAKYAIAQEPSFDGAYTVLADAQRQQGRVEEAMATLEQALKLNPRNCEAAYSLAILK-KDVSLDETIELYRRVLRHDEGDVDAMFNLAEVLHCAGDQSGELAMYRQCITCDPAHEkiaSAYVNIGVTLGEQGHVDQEMEMYEQAIAIEPGHVFAWYSLGAALAENGRLEEAVDKFRHILAhIDPHHMGTYE 257
                  578899999*********************************************************886.5678***********************************************99987622256899****************************************************9965426787766555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.6     1e-09   5.3e-07      27     100 ..      42     115 ..      36     117 .. 0.93
   2 !   41.4   0.0   4.8e-14   2.5e-11      43     192 ..      92     241 ..      91     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1e-09
    TIGR02521  27 rekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  r ++++  +q+ ++ l +g+l +A +  + A++++p+   a+ +lA +  q+g+ e+A +  ++Al+l+p n +
  MMETSP1174-20130828|18196_1  42 RVEVVRRLLQKSATLLSSGHLPAAEKTAKYAIAQEPSFDGAYTVLADAQRQQGRVEEAMATLEQALKLNPRNCE 115
                  56777788999***********************************************************9976 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 4.8e-14
    TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie.dpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeArall 192
                  +qg +e+A + le+Al+l+p + +a  +lA++ +++  l+++ e +r+ l+ ++ + d++ N    L   ++     +++++ i  dp+ e+ a++y N+g+++ ++g++++  ++ ++a++i+p+   + ++l     ++g++ eA + +
  MMETSP1174-20130828|18196_1  92 QQGRVEEAMATLEQALKLNPRNCEAAYSLAILKKDV-SLDETIELYRRVLRHDEGDVDAMFNLAEVLHCAGDQSGELAMYRQCITcDPAHEKIASAYVNIGVTLGEQGHVDQEMEMYEQAIAIEPGHVFAWYSLGAALAENGRLEEAVDKF 241
                  699***************************987776.6888999***********************999988888******9975899*****************************************999999999999999987765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   2.6e-10   1.3e-07      88     212 ..      82     205 ..      64     209 .. 0.90
   2 !    5.3   0.0    0.0019      0.99     104     169 ..     202     268 ..     196     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.6e-10
    TIGR03939  88 elealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlak 212
                  ++  lA A+R++++ ++A++  +++l+ +P+n ++  +la  + d + de+   + + l++ ++ d++ + +la vl  a+d+ ++la + q ++ +P  ++++ ++v+i + lg+   +++ ++
  MMETSP1174-20130828|18196_1  82 AYTVLADAQRQQGRVEEAMATLEQALKLNPRNCEAAYSLAILKKDVSLDETIELYRRVLRHDEG-DVDAMFNLAEVLHCAGDQSGELAMYRQCITCDPAHEKIASAYVNIGVTLGEQGHVDQEME 205
                  56789********************************************999999999998888.8888888**************************************999998777766665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0019
    TIGR03939 104 kAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalke.lkerfpsdaerlealaYvlraaed 169
                  + +e+y++++  +P    ++ +l  +la++g+ eeA ++ +  l++ +p++  ++e l +v + ++ 
  MMETSP1174-20130828|18196_1 202 QEMEMYEQAIAIEPGHVFAWYSLGAALAENGRLEEAVDKFRHiLAHIDPHHMGTYESLDRVTKMLKT 268
                  66899*********************************99983466778888888888888776665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0059         3      57      94 ..      85     122 ..      56     140 .. 0.82
   2 !    9.5   0.2   0.00032      0.16       5      85 ..     101     180 ..      98     190 .. 0.88
   3 !   11.4   0.0   8.3e-05     0.042      27      81 ..     193     247 ..     181     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0059
    TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpvyhaae 94 
                   La +  ++++ eeA+a+ + a++l++ + ++ y +a+
  MMETSP1174-20130828|18196_1  85 VLADAQRQQGRVEEAMATLEQALKLNPRNCEAAYSLAI 122
                  47888888888889999999999988888888888775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00032
    TIGR02552   5 atlksllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                  atl+++l+l++ + ea Y+lA  l +   ++e  +l++     d  + + ++ La++l+ +++ ++ +a+Y  + ++d+ +
  MMETSP1174-20130828|18196_1 101 ATLEQALKLNPRNCEAAYSLAI-LKKDVSLDETIELYRRVLRHDEGDVDAMFNLAEVLHCAGDQSGELAMYRQCITCDPAH 180
                  7899999999999999999997.55778899999999999999**********************************9876 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 8.3e-05
    TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaal 81 
                  +l +qg +++  ++++  +a++p     w++L+a+l + ++ eeA++ + +++a 
  MMETSP1174-20130828|18196_1 193 TLGEQGHVDQEMEMYEQAIAIEPGHVFAWYSLGAALAENGRLEEAVDKFRHILAH 247
                  5557888888899999999999999999999999999999999999999887653 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.018       9.3      78     112 ..      82     116 ..      53     123 .. 0.71
   2 !   14.1   0.0   2.2e-05     0.011      40     103 ..     148     211 ..     142     217 .. 0.94
   3 ?    3.5   0.0     0.044        22      41      67 ..     220     246 ..     215     259 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.018
    TIGR02795  78 allklgeslqelgqkekAkktlqevikrYPkssaa 112
                  a   l+ ++ ++g+ e+A +tl++  k  P++ +a
  MMETSP1174-20130828|18196_1  82 AYTVLADAQRQQGRVEEAMATLEQALKLNPRNCEA 116
                  44557888888899999999998888877766555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.2e-05
    TIGR02795  40 nAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevi 103
                  +A + l+e+l  +++ +   + +++ ++ +p +ek + a +++g+ l e+g+ ++  +++++ i
  MMETSP1174-20130828|18196_1 148 DAMFNLAEVLHCAGDQSGELAMYRQCITCDPAHEKIASAYVNIGVTLGEQGHVDQEMEMYEQAI 211
                  899********************************************************99966 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.044
    TIGR02795  41 AqYwlGealyakkkykdAakaflevvk 67 
                  A Y lG al +++ +++A ++f+++++
  MMETSP1174-20130828|18196_1 220 AWYSLGAALAENGRLEEAVDKFRHILA 246
                  678999999999999999999988776 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00018     0.092      71     109 ..      81     119 ..      43     124 .. 0.80
   2 !    5.5   0.0    0.0044       2.3      71     135 ..     148     211 ..     128     214 .. 0.87
   3 ?    0.7   0.0      0.13        65      36      61 ..     221     246 ..     216     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00018
    TIGR03302  71 qaqLdlayayYksgeyeeAlaaadrFiklyPnhedvdya 109
                   a   la+a+ ++g++eeA a++++ +kl+P++ +++y 
  MMETSP1174-20130828|18196_1  81 GAYTVLADAQRQQGRVEEAMATLEQALKLNPRNCEAAYS 119
                  456679******************************996 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0044
    TIGR03302  71 qaqLdlayayYksgeyeeAlaaadrFiklyPnhedvdyalYliglsnykqidrvdrDqkaakeAl 135
                  +a+++la + + +g+ +  la +++ i+  P+he+++ a+  ig++  +q  +vd++ + +++A+
  MMETSP1174-20130828|18196_1 148 DAMFNLAEVLHCAGDQSGELAMYRQCITCDPAHEKIASAYVNIGVTLGEQ-GHVDQEMEMYEQAI 211
                  68889999999999999999************************998887.77777777777776 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.13
    TIGR03302  36 lYeeaeeelekgnykeAikkfeeles 61 
                   Y+ + +  e+g+ +eA++kf+ + +
  MMETSP1174-20130828|18196_1 221 WYSLGAALAENGRLEEAVDKFRHILA 246
                  58889999999*********998865 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   6.8e-05     0.035     523     572 ..      61     110 ..      43     123 .. 0.79
   2 !    5.6   0.0    0.0021       1.1     308     403 ..     127     222 ..     112     263 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.8e-05
    TIGR00990 523 dfieaekllekalildPesdiavitlaqlllqqekvdealklferaaela 572
                      aek    a+  +P  d a   la  + qq++v+ea+  +e+a +l 
  MMETSP1174-20130828|18196_1  61 HLPAAEKTAKYAIAQEPSFDGAYTVLADAQRQQGRVEEAMATLEQALKLN 110
                  4556888888999999****************************998886 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0021
    TIGR00990 308 esyeeaarafekaldlgelkekealalelrGifkflkgkheealadlsksieldPr...ltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyy 403
                   s +e+ +++++ l  +e ++  a+ ++l  ++++  g++ + la  +++i  dP+   ++ +y++  +   e+g+ d+  e +++a++ ++     +y
  MMETSP1174-20130828|18196_1 127 VSLDETIELYRRVLRHDE-GDVDAM-FNLAEVLHC-AGDQSGELAMYRQCITCDPAhekIASAYVNIGVTLGEQGHVDQEMEMYEQAIAIEPGHVFAWY 222
                  555555666666555443.444443.677777777.467777788888888888863335567777777778888888888888888877766555544 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0072       3.7       3      26 ..      83     106 ..      82     110 .. 0.86
   2 ?   -3.1   0.0       4.6   2.4e+03      16      28 ..     129     141 ..     128     143 .. 0.76
   3 ?    5.2   0.0     0.011       5.8       9      26 ..     227     244 ..     226     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0072
    TIGR00756   3 yntlisglckagrveeAlelfdeM 26 
                  y++l ++  ++grveeA+  +++ 
  MMETSP1174-20130828|18196_1  83 YTVLADAQRQQGRVEEAMATLEQA 106
                  999999999*********999875 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.6
    TIGR00756  16 veeAlelfdeMke 28 
                  ++e +el+++ ++
  MMETSP1174-20130828|18196_1 129 LDETIELYRRVLR 141
                  6899999998665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.011
    TIGR00756   9 glckagrveeAlelfdeM 26 
                  +l+++gr+eeA++ f+ +
  MMETSP1174-20130828|18196_1 227 ALAENGRLEEAVDKFRHI 244
                  799*********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.46
# Mc/sec: 806.28
//
Query:       MMETSP1174-20130828|18197_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 457.84
//
Query:       MMETSP1174-20130828|18198_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|18201_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   68.7   0.0    1.4e-19   68.5   0.0    1.0  1  TIGR00006 TIGR00006: S-adenosyl-methyltransferase MraW


Domain annotation for each model (and alignments):
>> TIGR00006  TIGR00006: S-adenosyl-methyltransferase MraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.4e-23   1.4e-19     100     191 ..       2      93 ..       1     100 [. 0.92

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 3.4e-23
    TIGR00006 100 lDLGvSspqldeaerGFsfkkdgplDmRmdqs.qklsAaevlnelseedlekilkkygeekfskriakaivearkkkklkttkelaeviskav 191
                  +DLG+Ss+q+d+++rGF +k+ gplDmRm+ + ++ sA+++l++l+ ++l+ +lk+ ++e+f+ +ia  +   +  k  +tt ela  i +++
  MMETSP1174-20130828|18201_1   2 ADLGLSSMQIDDNDRGFTYKRVGPLDMRMNPDeNTESAHDLLRRLRVRQLKCMLKENSDEEFAAEIAVGLIG-KGVKIPETTVELAGRIRDII 93 
                  6*****************************99899**********************************998.55667789999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 289.80
//
Query:       MMETSP1174-20130828|18200_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1183.78
//
Query:       MMETSP1174-20130828|18202_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1174-20130828|18206_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|18208_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.5   0.0        1.5    6.6   0.0    2.1  2  TIGR02607 antidote_HigA: addiction module antidote protein, HigA family


Domain annotation for each model (and alignments):
>> TIGR02607  antidote_HigA: addiction module antidote protein, HigA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0023       9.3      22      47 ..       9      34 ..       4      41 .. 0.88
   2 ?    6.6   0.0   0.00037       1.5      21      45 ..      71      95 ..      63     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0023
    TIGR02607 22 svralAkalgvsrstlsrivngraai 47
                 s++++Ak+ gv   +++++++gr + 
  MMETSP1174-20130828|18208_1  9 SAADAAKTFGVAGCSVNHVLTGRCKS 34
                 7899*****************99765 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00037
    TIGR02607 21 lsvralAkalgvsrstlsrivngra 45
                 ++++a+  algvs+s ++r++ng +
  MMETSP1174-20130828|18208_1 71 VTAKAAGLALGVSNSDVGRVCNGFK 95
                 68888999*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.48
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|18212_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 282.31
//
Query:       MMETSP1174-20130828|18213_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055    9.6   4.5      0.066    9.3   3.1    1.1  1  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.1   1.6e-05     0.066     319     455 ..      29     166 ..      14     211 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.6e-05
    TIGR00596 319 nkkrgsekfllrklrqyrkqreklkklakevkkkeaakenassrvnktlrkekvaskrrrvrgakeaaveklreeetdevqvvekdeeleee....ldeleegeaaeeeaandskifeikdeledidissdaeldlpqliv 455
                  + +r  ++   +  +  +kq ek kk a+e +  ++a + + s  ++tl+++    kr   +g++++ + ++++++td  +   k+++ ++      ++ ++ ++++ +++ d+   e +d+  ++ +++  ++d ++ i 
  MMETSP1174-20130828|18213_1  29 DDERRKRRQTKKDEKFRKKQIEKEKKKAEEARIANKAAKSTGS--SSTLSGG-AGGKRAAGAGGGGTESPRTTDSGTDSDDAAAKNKNRARHsdsdDSDSDSDSDYDSDSDSDAGSDEEEDDTREFLLKDRDAIDFQKRIA 166
                  4444444444434444445666666667777776655555555..5555555.5667777788888889999*****9888888877766664533334444555888899999999999999999999966677555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1065.81
//
Query:       MMETSP1174-20130828|18209_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1602.20
//
Query:       MMETSP1174-20130828|18215_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    7.6   7.5       0.93    6.6   4.8    1.7  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.8   0.00023      0.93     151     215 ..      41     112 ..      25     116 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00023
    TIGR02349 151 GsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCs.....eCkGeGkii..kekCkeCkGkgrvkek 215
                  G    ++++ +tC+ CgG+ +v   +g+ +  +   + C+     +C G  ++   +  C++C+G g  +++
  MMETSP1174-20130828|18215_1  41 GRDSADEQEEDTCTVCGGSTNVDDGNGENMEDVLLCERCNseahlSCAGLAEVPigSWYCSTCEGVGSRNDD 112
                  66677788899********99999999877777777777633333488877754226689999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 852.27
//
Query:       MMETSP1174-20130828|18218_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|18224_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|18221_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1934.47
//
Query:       MMETSP1174-20130828|18225_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1174-20130828|18227_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1176.90
//
Query:       MMETSP1174-20130828|18229_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|18231_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|18233_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|18238_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|18240_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.51
# Mc/sec: 647.01
//
Query:       MMETSP1174-20130828|18241_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 655.55
//
Query:       MMETSP1174-20130828|18244_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1174-20130828|18245_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|18246_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|18252_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 909.88
//
Query:       MMETSP1174-20130828|18253_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|18254_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|18257_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 241.02
//
Query:       MMETSP1174-20130828|18259_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 430.70
//
Query:       MMETSP1174-20130828|18256_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1863.85
//
Query:       MMETSP1174-20130828|18261_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 232.20
//
Query:       MMETSP1174-20130828|18268_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|18269_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 217.94
//
Query:       MMETSP1174-20130828|18270_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 389.02
//
Query:       MMETSP1174-20130828|18273_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   21.9   1.3      2e-05   21.8   0.9    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.9   4.9e-09     2e-05       5      70 ..       4      70 ..       1     130 [. 0.80

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.9e-09
    TIGR00601  5 lKtlkqqkfkidlepdetvkelKekiese.kgkdayevaqqkLiyaGkiLsDdktvkeykikekdfv 70
                 + t+ ++++++++++ +t+  +K +i+++  g +    ++q L+     L Ddkt+++yk++++  +
  MMETSP1174-20130828|18273_1  4 VETFSGKTITLNVKSTDTIEGVKAQIQDKlVGYEKAVASKQMLVLGYTCLDDDKTLRDYKVHNEATL 70
                 78999*********************987256667777899999999**************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 543.96
//
Query:       MMETSP1174-20130828|18276_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|18278_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-08   29.8   0.0      7e-08   29.7   0.0    1.0  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    0.00022   17.9   0.0    0.00022   17.9   0.0    1.0  1  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    0.00024   17.3   0.0    0.00024   17.3   0.0    1.0  1  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
  ------ inclusion threshold ------
      0.012   13.3   0.2      0.022   12.4   0.1    1.4  1  TIGR03776 RPE5: rickettsial palindromic element RPE5 domain


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.8e-11     7e-08      52     118 ..       2      82 ..       1      84 [] 0.77

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 6.8e-11
    TIGR01536  52 RLaiidlseg..aQPlsnek........evvivfnGEIYNheeLreeleek.GyeFe..tksDtEViLaayeewg.eelve 118
                  RLai+d  ++  + P+  +         +  +  nGEIYNh+ L +++ ++ G + e  +ksD+EVi +a  ++g ee+v+
  MMETSP1174-20130828|18278_1   2 RLAIVDPDSAaaDMPFLLTFhkgtpnekKLKLAANGEIYNHKILYKDIVDNhGWDQEriSKSDCEVIAHACAAMGpEEAVK 82 
                  8899988776556787655555566666889*************99987651665554479*************9999987 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-07   0.00022      66     117 ..      27      82 ..       1      84 [] 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.1e-07
    TIGR03108  66 edgsvvvvfnGeiynfkelvkel.ealGh..qfrtksdtevivhaWeeWG.edcve 117
                  ++++  +  nGeiyn+k l k++ ++ G   +  +ksd evi ha  + G e++v+
  MMETSP1174-20130828|18278_1  27 NEKKLKLAANGEIYNHKILYKDIvDNHGWdqERISKSDCEVIAHACAAMGpEEAVK 82 
                  577889999***********9973456651144589*********99998445555 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.4e-07   0.00024      66     114 ..      27      78 ..       1      84 [] 0.72

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.4e-07
    TIGR03104  66 aelglalvfnGaiynykelreele.alGy..rffsegdtevilkayhawGee 114
                  +e +l l+ nG iyn+k l ++++ ++G+  +  s++d evi +a  a G e
  MMETSP1174-20130828|18278_1  27 NEKKLKLAANGEIYNHKILYKDIVdNHGWdqERISKSDCEVIAHACAAMGPE 78 
                  56789999***********999872567722568***********9999954 PP

>> TIGR03776  RPE5: rickettsial palindromic element RPE5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.2e-05     0.022      26      39 ..      39      52 ..      34      54 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
    TIGR03776 26 ireHprtyKddVaN 39
                 i  H + yKd+V+N
  MMETSP1174-20130828|18278_1 39 IYNHKILYKDIVDN 52
                 789*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1174-20130828|18280_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.4   0.4      0.012   12.3   0.3    1.2  1  TIGR00634 recN: DNA repair protein RecN


Domain annotation for each model (and alignments):
>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3     3e-06     0.012     340     390 ..      20      70 ..       8      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3e-06
    TIGR00634 340 qLedseesleaLeeevekleeelakaaeelskiRrkaAekLakrveqeLke 390
                    ++++++  +L ++   + +e+a+aa e++ +R +aA+ La  v+  L++
  MMETSP1174-20130828|18280_1  20 TCSSRKDRISQLMKDKGDVSKEVAAAALEITGERLEAAKMLAMTVSTGLHT 70 
                  4567788899***********************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 346.03
//
Query:       MMETSP1174-20130828|18281_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|18279_1  [L=1484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   15.8   0.3     0.0087   13.0   0.0    2.0  2  TIGR00225 prc: C-terminal processing peptidase
     0.0076   13.0   1.0       0.41    7.3   0.0    2.9  3  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.028        58      54     102 ..      67     115 ..      55     120 .. 0.90
   2 !   13.0   0.0   4.2e-06    0.0087      48     107 ..     439     498 ..     425     504 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.028
    TIGR00225  54 GiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmeldda 102
                  G+++ ++++ +++++++ gs     g+ +g +++ v+g+sv+   ++ +
  MMETSP1174-20130828|18279_1  67 GLEIISRSGLLEVTKVVSGSTLDSEGVAVGFHVTDVNGSSVDEDTIESL 115
                  899999***********************************98888765 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 4.2e-06
    TIGR00225  48 geleGiGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmelddavelir 107
                   e   iGi+v++  +++v+  + egs A   g+k+gD +++v g+s+a+++  + ve+++
  MMETSP1174-20130828|18279_1 439 IESMEIGITVENVLERTVVHLVKEGSTARAKGVKAGDLLLEVHGNSTASLSHYETVEALK 498
                  555679*****999999999888899998888******************9999999887 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0087        18     257     293 ..      72     109 ..      64     127 .. 0.80
   2 ?    0.2   0.0     0.029        59     300     345 ..     272     317 ..     249     379 .. 0.72
   3 !    7.3   0.0    0.0002      0.41     261     296 ..     455     490 ..     434     502 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0087
    TIGR02037 257 kakGal.vaevlkgspAekaGlkaGDvilkvngkkiks 293
                  +++G l v++v++gs  ++ G+ +G  +++vng ++++
  MMETSP1174-20130828|18279_1  72 SRSGLLeVTKVVSGSTLDSEGVAVGFHVTDVNGSSVDE 109
                  556666699************************99986 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.029
    TIGR02037 300 aigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkel 345
                  + +++ + + v ++ ++ g++k++kv++ ++ +++++s k++++ l
  MMETSP1174-20130828|18279_1 272 EANEVVISQVVMVEAVQLGETKSLKVQVPQNASDESNSAKNQDSLL 317
                  445667888899999*************976666666654433332 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0002
    TIGR02037 261 alvaevlkgspAekaGlkaGDvilkvngkkiksaad 296
                   +v  v +gs A+  G+kaGD++l+v g++  s ++
  MMETSP1174-20130828|18279_1 455 TVVHLVKEGSTARAKGVKAGDLLLEVHGNSTASLSH 490
                  567889999999999999999999999998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.18s 00:00:00.98 Elapsed: 00:00:00.62
# Mc/sec: 3159.22
//
Query:       MMETSP1174-20130828|18283_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-89  296.2   0.0    8.7e-89  296.1   0.0    1.0  1  TIGR01986 glut_syn_euk: glutathione synthetase


Domain annotation for each model (and alignments):
>> TIGR01986  glut_syn_euk: glutathione synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.1   0.0   2.1e-92   8.7e-89     203     472 ..       6     290 ..       1     291 [. 0.90

  Alignments for each domain:
  == domain 1    score: 296.1 bits;  conditional E-value: 2.1e-92
    TIGR01986 203 ivllivqeeernifDqrvleleLle...kfniksirktlaevneklsldedenk.......LfvkdteqevavvYyrsGYtlddypseeeWearLllekslaikcPdiatqLaGskkiqqeLaeegvLerfledkeevaklrktfadlysLDdtk.rGkegiklalekPskfvlkPqreGGGnnvYgedipelLkklkeeerdaYiLmekiepelsenillreekaekeqviselGiyGvvl......rnekkvvvneqsGfllrtkikksneGGvaaGfavLdsiy 472
                   v+++vq++ern+ Dqr+le+ L +   +  +++ r tl+e+ ++ +++ + +        L ++  ++e++vvY+r GYt+ddyp+e+eWear l+e s++ikcP + +qLaG+kk+qq La++g Lerf++d+ e a++r++fa+l+ L+ ++  G+  + +a e+Ps++vlkPqreGGGnn +g+d+   L+ +  +e  a++Lme+i+p  s+ illr++ a+  ++i elGiyGv+l       +ek+vv n+ +G+llr k+++++eGGva+G+a L+s+ 
  MMETSP1174-20130828|18283_1   6 WVMFVVQPGERNVADQRLLEYRLTNlpdRDTTHVLRATLKEIRDRAVVKTELAShgspvpvLSMD--GHEISVVYFRAGYTPDDYPTESEWEARALVEGSFSIKCPCLPYQLAGTKKVQQALADPGQLERFVKDPAEGASMRRAFAGLWGLEPSNaAGQSEKVKAAEDPSRYVLKPQREGGGNNFFGDDLSRELRTMSPDELSAHVLMERIFPPSSHGILLRGGIATAGECICELGIYGVFLggssrlNSEKEVVLNGPAGHLLRKKLIDTDEGGVASGYAFLSSPL 290
                  69******************97764333999*************999987643212222225555..************************************************************************************9876268888889***************************************************************************99644333256777*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1120.02
//
Query:       MMETSP1174-20130828|18285_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 979.27
//
Query:       MMETSP1174-20130828|18288_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 850.60
//
Query:       MMETSP1174-20130828|18286_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.7   0.3      0.016   12.5   0.2    1.1  1  TIGR03672 rpl4p_arch: 50S ribosomal protein L4P


Domain annotation for each model (and alignments):
>> TIGR03672  rpl4p_arch: 50S ribosomal protein L4P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   3.9e-06     0.016      37     107 ..       8      80 ..       2      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.9e-06
    TIGR03672  37 aaqtarlqpkGadplaGkrtsaeslgsgrGva..rvprlkessraarvpqavgGrkahpPkvekklvekiNkk 107
                  a+  ++ q k ++p  G+++ a+  ++ r +    v r +++s+  ++p + +G   hpP  +  + ++iNkk
  MMETSP1174-20130828|18286_1   8 AQSNSQPQRKRKQPSLGLNRRATDKRTMRNMPplTVMRQTSGSQNFTIPCVPSGVVNHPPLKSPAWNRTINKK 80 
                  5555677889999999*99999999998887623688888889*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1174-20130828|18289_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|18290_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1174-20130828|18292_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|18293_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 233.52
//
Query:       MMETSP1174-20130828|18294_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.97
# Mc/sec: 444.95
//
Query:       MMETSP1174-20130828|18296_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 241.35
//
Query:       MMETSP1174-20130828|18297_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 437.45
//
Query:       MMETSP1174-20130828|18295_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1586.94
//
Query:       MMETSP1174-20130828|18298_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-13   45.6   0.0    7.7e-13   45.0   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0026   15.1   0.1     0.0062   13.8   0.1    1.7  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.8e-16   7.7e-13       8     185 ..       5     192 ..       1     197 [. 0.73

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 3.8e-16
    TIGR03903   8 ikllRedaa.eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyve....GrtlrevLaadGa.........LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsa....adveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                  +k +++++  ++ +     rRe+ +  +++h ni  L++  e+++  ++ + e+v     G  l  + a d +           +    ++  q++ a+    d+  +hRDLkP+ni++++      ++++ k++DFG + +l   ++             G+PaYaaPe  ++      sD+++ G+i++    G
  MMETSP1174-20130828|18298_1   5 VKAIKKNKFdTNPKEAINTRREVDILSKMKHENISTLIEGIECPE-TVYIIQEFVGegggGDMLEYMEAIDYTqayknsrywFQPRVALHIGKQIISAINYLQDNRCIHRDLKPENIVMTKllpdHWKKTTVKLVDFGCARILKARQK-------GIIGPAGTPAYAAPEVYKNKLHSFPSDVWSVGVIFFYFWSG 192
                  5555555544566677788*******************9999998.9********53332333433333333200111111134445567778*************************997332234677899******999875555.......233457*****************************876666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     3e-06    0.0062      76     138 ..      67     145 ..       1     153 [. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-06
    TIGR03724  76 meyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGLgkk 138
                  +ey+e  +  ++ +++++        ++ k++  +++ l +++ +h Dl ++Ni+++        ++++ l+DfG +++
  MMETSP1174-20130828|18298_1  67 LEYMEAIDYTQAYKNSRYwfqprvalHIGKQIISAINYLQDNRCIHRDLKPENIVMTkllpdhwkKTTVKLVDFGCARI 145
                  44444444444444444466675566777888888999*****************987888888788999*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 982.59
//
Query:       MMETSP1174-20130828|18301_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 699.94
//
Query:       MMETSP1174-20130828|18303_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.67
# Mc/sec: 145.78
//
Query:       MMETSP1174-20130828|18305_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.2   0.0    2.2e-12   44.5   0.0    1.3  2  TIGR01544 HAD-SF-IE: HAD hydrolase, family IE
    1.5e-06   26.1   0.0      2e-06   25.7   0.0    1.1  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
     0.0014   16.2   0.0     0.0019   15.7   0.0    1.2  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
     0.0077   14.2   0.0     0.0093   13.9   0.0    1.3  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR01544  HAD-SF-IE: HAD hydrolase, family IE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.2e-15   2.2e-12     137     254 ..       3     121 ..       1     127 [. 0.87
   2 ?   -3.9   0.0       1.2   1.3e+03     256     266 ..     144     154 ..     142     155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.2e-15
    TIGR01544 137 eklqrhsiPvlifsaGiGnvveevlrqal.vlhpnvkvvsnfldfdedgvlkgfkeplihtfnknesvlqket...eyfddvkdrsniillGdsiGdidmasGveasehilkiGylndrvde 254
                  + l +h i + i saG+  v++e+l q+   lh   ++++n+  + + g + +f +pli   n + +vl++     e+  d     n+il G+siGd+    G+ +++h l  G+l+++vd 
  MMETSP1174-20130828|18305_1   3 AWLRAHHIRTTIVSAGVSTVIKEILEQNDiELHDGAEIIANVPVW-DAGKIVSFGKPLITSRN-KADVLRNMGsgdEWQADGGMPRNVILAGNSIGDAACLLGM-RHGHSLSFGFLHEEVDV 121
                  56899***********************9789**********999.679999********999.5566655431227888888899*****************7.689***********996 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.2
    TIGR01544 256 lkkymdvydiv 266
                  l +y + yd+v
  MMETSP1174-20130828|18305_1 144 LAQYLEHYDVV 154
                  67899999998 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.9e-09     2e-06      82     170 ..       2      97 ..       1     102 [. 0.75

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.9e-09
    TIGR01488  82 ikwlkekGiklvivSggldflveklaeklgidk.....vfanelelddnGlltgriegevnpsgeeKgkvlkel......leeskedrkeiiavGDsvnD 170
                  ++wl+++ i+++ivS+g +  +++++e+ +i+      ++an  +  d G+++    g++  + ++K +vl+        ++ ++ +r ++i  G s +D
  MMETSP1174-20130828|18305_1   2 LAWLRAHHIRTTIVSAGVSTVIKEILEQNDIELhdgaeIIANVPVW-DAGKIVS--FGKPLITSRNKADVLRNMgsgdewQADGGMPR-NVILAGNSIGD 97 
                  68*****************************9999**********9.5677777..34578888999999985433222133333343.56666766666 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-06    0.0019      89     156 ..       2      73 ..       1     100 [. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.9e-06
    TIGR01491  89 vrlLkekGlktavvsgGislLvkkvaeklqaDyvlsnelvfd....ekGfvqpdgivrvivdkkgiavkrlk 156
                  + +L+ + ++t++vs+G+s ++k + e+ +++     e++ +    + G + + g ++++  +k  +++++ 
  MMETSP1174-20130828|18305_1   2 LAWLRAHHIRTTIVSAGVSTVIKEILEQNDIELHDGAEIIANvpvwDAGKIVSFGKPLITSRNKADVLRNMG 73 
                  679************************9999988877777764444689***************99999885 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     9e-06    0.0093      81     122 ..       2      44 ..       1     100 [. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9e-06
    TIGR01489  81 iefikekeidliviSdgnefFidavleaigv..kdvfveiysNk 122
                  +++++++ i+  ++S+g +  i+++le+  +  +d   ei++N 
  MMETSP1174-20130828|18305_1   2 LAWLRAHHIRTTIVSAGVSTVIKEILEQNDIelHD-GAEIIANV 44 
                  79*************************96551134.47888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 581.47
//
Query:       MMETSP1174-20130828|18306_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1174-20130828|18311_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 282.31
//
Query:       MMETSP1174-20130828|18308_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 523.24
//
Query:       MMETSP1174-20130828|18310_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    7.0  13.1       0.45    6.5   9.1    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.1   0.00011      0.45     534     685 ..      88     248 ..      78     250 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00011
    TIGR01069 534 lekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatell.....kklk.........eekakvpqkpknlqadkvGdkvkvesfgqkgkvvevkkgkkvnvtvgllklkvkeselekinkappkkkekvpkkv 685
                   ++l +++++++++ +q+ +++++++++ ++ ++++ + + +++++   ++ r+++ek+ ek+ ++ +  ++     +            + + +  q+pk+ +  k+G       +g++  v + +k++k   +++ l  ++ e+ele+++ + +  k+k  ++ 
  MMETSP1174-20130828|18310_1  88 YQQLWQQQQLEHQQQQQQLEQQQQQQQQQQQLADESFHRMSAHSMQ--GQKGRRAREKELEKQIASGNFAVVdtmaqG--VlvapdtstwNPHRHGHQEPKQKEI-KIGALTYNSASGESQMVYQPSKTQKRKHQINSLAFTAAERELELMERRGQSMKTKAQTQA 248
                  5666777777777777777777777777766666666666555555..455666666666666666555555433430..1334433332334444455555555.89**9999*************************************997777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       675  (0.164554); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|18314_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|18315_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|18318_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 612.28
//
Query:       MMETSP1174-20130828|18317_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.1   0.0        0.4    8.3   0.0    2.2  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   9.7e-05       0.4       7      69 ..      14      77 ..       9     133 .. 0.69
   2 ?    1.2   0.0     0.014        59     113     133 ..     160     180 ..     153     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 9.7e-05
    TIGR00231  7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt..ykvnllDTaGqedfdai 69
                 ++vG+ ++GKs+L+  +   +   ++ kp++  +y  +     + +    + ++ ++G  + +++
  MMETSP1174-20130828|18317_1 14 LFVGQKESGKSSLITAFHNPS-KDESPKPTTALEYLFARKSTSPNQpkDVAHIWELGGGSKLRKL 77
                 79***************9999.8888889999888654333222223346677777775555444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.014
    TIGR00231 113 vpiilvvnKiDlkddlktkvk 133
                  +p+i+ +nK D+ +++++ +k
  MMETSP1174-20130828|18317_1 160 IPVIIIANKYDKFKSFESIQK 180
                  89*********9885554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1492.21
//
Query:       MMETSP1174-20130828|18328_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 671.59
//
Query:       MMETSP1174-20130828|18331_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|18324_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1701.82
//
Query:       MMETSP1174-20130828|18333_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 226.75
//
Query:       MMETSP1174-20130828|18335_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 500.78
//
Query:       MMETSP1174-20130828|18340_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 832.26
//
Query:       MMETSP1174-20130828|18343_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-09   33.4   0.0    6.6e-09   33.3   0.0    1.0  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
      1e-05   22.5   0.0    1.1e-05   22.5   0.0    1.0  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    0.00017   18.9   0.0    0.00018   18.8   0.0    1.0  1  TIGR03611 RutD: pyrimidine utilization protein D
    0.00017   19.1   0.0    0.00019   19.0   0.0    1.0  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0016   15.7   0.0     0.0017   15.6   0.0    1.0  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
  ------ inclusion threshold ------
      0.029   11.8   0.0      0.032   11.6   0.0    1.0  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   9.6e-12   6.6e-09     197     250 ..      14      67 ..       4      68 .. 0.95

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 9.6e-12
    TIGR02427 197 lviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                   v++Gd+D + P +  r+ia+l+   + +e+++++Hlp  e+pe++a+ll +f+
  MMETSP1174-20130828|18343_1  14 CVVTGDDDRVVPVKASRRIANLLGAQEAQEMKDTGHLPMDERPEELAELLLRFI 67 
                  589*************************************************98 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.6e-08   1.1e-05     224     277 ..      14      67 ..       2      68 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.6e-08
    TIGR03056 224 lliageedkavppdvskeaatrlplatlrevpGlGhlvheedadgvaglildav 277
                   +++g++d+ vp + s+++a+ l     +e++ +Ghl  +e ++ +a l+l ++
  MMETSP1174-20130828|18343_1  14 CVVTGDDDRVVPVKASRRIANLLGAQEAQEMKDTGHLPMDERPEELAELLLRFI 67 
                  6789**********************************************9987 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-07   0.00018     199     255 ..      11      67 ..       5      69 .] 0.93

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.6e-07
    TIGR03611 199 lpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldfL 255
                   + ++++  DD +vP+++s+++a+ L   e + ++  gh     +pe++ elll f+
  MMETSP1174-20130828|18343_1  11 ADFCVVTGDDDRVVPVKASRRIANLLGAQEAQEMKDTGHLPMDERPEELAELLLRFI 67 
                  56799*************************************************997 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.7e-07   0.00019     192     245 .]      14      67 ..       8      67 .. 0.94

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.7e-07
    TIGR01738 192 LrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaallrefv 245
                    + G  D++vP k  + + +l+   e+  +++++h P   ++e++a+ll  f+
  MMETSP1174-20130828|18343_1  14 CVVTGDDDRVVPVKASRRIANLLGAQEAQEMKDTGHLPMDERPEELAELLLRFI 67 
                  5789*********************************************99885 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-06    0.0017     211     264 ..      14      68 ..       7      69 .] 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.5e-06
    TIGR02240 211 lvlagdddpliplinmrllawripnael.hviddghlflvtraeavapiimkfla 264
                   v++gddd ++p+   r +a  +   e   + d ghl +  r e +a ++++f++
  MMETSP1174-20130828|18343_1  14 CVVTGDDDRVVPVKASRRIANLLGAQEAqEMKDTGHLPMDERPEELAELLLRFIK 68 
                  5899*************99999987765157789******************985 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.7e-05     0.032     237     287 ..      16      67 ..      13      68 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.7e-05
    TIGR01250 237 tvgefde.mtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdfl 287
                  ++g +d  ++++a r++++ +   + + ++d++hl+m e pee  +ll  f+
  MMETSP1174-20130828|18343_1  16 VTGDDDRvVPVKASRRIANLLGAQEAQEMKDTGHLPMDERPEELAELLLRFI 67 
                  56777762578999***********************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 246.14
//
Query:       MMETSP1174-20130828|18350_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 186.72
//
Query:       MMETSP1174-20130828|18349_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-18   62.6   0.0    1.1e-17   61.8   0.0    1.4  1  TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family
     0.0022   16.6   0.4      0.054   12.1   0.0    3.0  4  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain


Domain annotation for each model (and alignments):
>> TIGR00842  bcct: transporter, betaine/carnitine/choline transporter (BCCT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   5.3e-21   1.1e-17     342     450 ..      57     166 ..      37     168 .. 0.89

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 5.3e-21
    TIGR00842 342 aealfellaalP.lativsalaliviviffvtsadsaalvlaaissrevelgeeppklvrvfWavliglialslllsgg...laalqtvviiaalPfllvllvvvaslikelk 450
                  a+ ++++++ +  +  + ++++li ++++f+ts ds+++v + + s+ ++++  pp++++v+Wa + gl a++l++sgg   l+al+ v i+a+lP+++ + +++++l++++k
  MMETSP1174-20130828|18349_1  57 ATRIYDIVQPYTgMEDFLTWVILIGVCLYFITSSDSGSYVDD-MLSAGGHTN--PPAIQKVYWAWMEGLTAIALVYSGGqdsLTALRAVSIVAGLPYTFAVCCMCTALYRAVK 166
                  67788888887625678899999999**************99.999999999..********************************************************987 PP

>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.18   3.8e+02      61      91 ..      47      79 ..      35      87 .. 0.78
   2 ?   -0.1   0.0      0.16   3.3e+02      87      95 ..     152     159 ..     115     169 .. 0.71
   3 ?   -3.3   0.0       1.6   3.3e+03       2      12 ..     179     189 ..     178     193 .. 0.83
   4 !   12.1   0.0   2.6e-05     0.054       3     104 ..     228     323 ..     199     324 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.18
    TIGR01571 61 llytgavRkklrkkyklqg..aiceDflvhlfc 91
                 ++y+  +R +  + y + +  +++eDfl+++++
  MMETSP1174-20130828|18349_1 47 GYYALSCRGHATRIYDIVQpyTGMEDFLTWVIL 79
                 678888899999999997766677799999876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.16
    TIGR01571  87 vhlfcclCa 95 
                     +cc+C+
  MMETSP1174-20130828|18349_1 152 F-AVCCMCT 159
                  2.3344443 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.6
    TIGR01571   2 eWetglldcle 12 
                   W+t ++d l+
  MMETSP1174-20130828|18349_1 179 AWSTHVFDLLS 189
                  6******9875 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 2.6e-05
    TIGR01571   3 WetglldcleDislcllglfcpcvlfgkiaerlgtfaeecllaglllililallgeigllytgavRkklrkkyklqgaiceDflvhlfcclCalcQevrelk 104
                  W+ g+  ++       +gl++  + +   +++++ + + +l+a l ++ ++     +  +y   +R+++r k ++ g ++eD  +++  + + l Q   e+k
  MMETSP1174-20130828|18349_1 228 WSVGISTVMVALYYTGFGLIVGGYSISTSSDNVE-SYRGVLIASLGWVFYM-----FFAVYVAGLRSSIRIKLGIYGGSMEDLWTTMTMPGFVLSQFESEVK 323
                  6666666666666666666666666666666666.4455555555555444.....33579**************************999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|18354_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1174-20130828|18356_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|18359_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1228.76
//
Query:       MMETSP1174-20130828|18364_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|18362_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 932.44
//
Query:       MMETSP1174-20130828|18365_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-10   35.2   0.0    9.2e-10   35.2   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.7e-09   33.1   0.0    8.4e-09   33.0   0.0    1.1  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.1e-08   31.1   0.0    2.2e-08   31.0   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.1e-08   30.0   0.0    4.1e-08   30.0   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.4e-08   29.6   0.0    4.4e-08   29.6   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.5e-08   29.8   0.0    7.3e-08   29.6   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    8.4e-08   30.0   0.0    9.1e-08   29.9   0.0    1.0  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.1e-07   29.3   0.0    1.2e-07   29.3   0.0    1.0  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      2e-07   28.7   0.0      2e-07   28.7   0.0    1.0  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.6e-07   28.4   0.0    2.6e-07   28.4   0.0    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.6e-07   27.3   0.0      6e-07   27.2   0.0    1.1  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.1e-07   25.8   0.0    8.1e-07   25.8   0.0    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.1e-07   26.5   0.0    8.8e-07   26.4   0.0    1.0  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    8.2e-07   26.4   0.0    8.7e-07   26.3   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    9.4e-07   26.3   0.0    1.1e-06   26.1   0.0    1.0  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.1e-06   26.2   0.0    1.1e-06   26.2   0.0    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.8e-06   25.2   0.0    1.8e-06   25.2   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      2e-06   25.3   0.0      2e-06   25.3   0.0    1.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.1e-06   24.4   0.0    2.1e-06   24.4   0.0    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.9e-06   24.0   0.0    3.2e-06   23.8   0.0    1.0  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    4.2e-06   23.4   0.0    4.2e-06   23.4   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.9e-06   24.3   0.0    5.2e-06   24.2   0.0    1.0  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.3e-06   23.0   0.0    5.5e-06   23.0   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.5e-06   23.8   0.0    5.6e-06   23.8   0.0    1.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
    5.5e-06   23.5   0.0    5.5e-06   23.5   0.0    1.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.5e-06   23.3   0.0    8.8e-06   23.3   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-05   22.9   0.0    1.1e-05   22.9   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-05   21.8   0.0    1.2e-05   21.7   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.5e-05   22.4   0.0    1.5e-05   22.4   0.0    1.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.6e-05   22.3   0.0    1.6e-05   22.3   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.9e-05   21.9   0.0    2.2e-05   21.7   0.0    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.6e-05   19.6   0.0    4.6e-05   19.6   0.0    1.0  1  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
    8.1e-05   18.9   0.0    8.1e-05   18.9   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    0.00011   18.4   0.0    0.00013   18.2   0.0    1.0  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    0.00012   19.6   0.0    0.00012   19.6   0.0    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    0.00013   19.5   0.0    0.00015   19.3   0.0    1.0  1  TIGR01618 phage_P_loop: phage nucleotide-binding protein
    0.00015   18.3   0.0    0.00015   18.3   0.0    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    0.00028   18.3   0.0    0.00028   18.3   0.0    1.1  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    0.00031   17.9   0.2    0.00033   17.8   0.1    1.0  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    0.00037   17.0   0.0    0.00037   17.0   0.0    1.0  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    0.00058   17.1   0.0    0.00058   17.1   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    0.00065   16.8   0.0    0.00065   16.8   0.0    1.1  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    0.00069   16.1   0.0     0.0007   16.1   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    0.00074   16.9   0.0    0.00074   16.9   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    0.00074   16.0   0.0    0.00074   16.0   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    0.00089   17.2   0.5      0.001   17.0   0.4    1.1  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
    0.00098   16.3   0.0    0.00098   16.3   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
     0.0012   15.8   0.0     0.0012   15.7   0.0    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
     0.0013   15.7   0.0     0.0013   15.7   0.0    1.1  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0013   16.2   0.1     0.0014   16.1   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
     0.0014   14.0   0.0     0.0014   14.0   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0015   15.6   0.0     0.0015   15.6   0.0    1.0  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0015   15.8   0.0     0.0015   15.8   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
     0.0019   15.0   0.0     0.0019   15.0   0.0    1.0  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.002   14.4   0.0      0.002   14.4   0.0    1.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0039   14.2   0.0     0.0039   14.2   0.0    1.1  1  TIGR00611 recf: DNA replication and repair protein RecF
     0.0058   14.3   0.0     0.0058   14.3   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0058   14.7   0.0     0.0069   14.5   0.0    1.1  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
      0.006   13.7   0.1       0.01   12.9   0.0    1.3  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
     0.0065   14.0   0.0     0.0065   14.0   0.0    1.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0065   14.0   0.0     0.0071   13.9   0.0    1.1  1  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0088   13.0   0.0     0.0092   12.9   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
     0.0099   11.1   0.0     0.0099   11.1   0.0    1.0  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
       0.01   12.4   0.0      0.012   12.2   0.0    1.0  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
      0.011   11.9   0.0      0.012   11.7   0.0    1.0  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.011   12.5   0.0      0.014   12.2   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.018   11.0   0.0      0.018   11.0   0.0    1.0  1  TIGR00630 uvra: excinuclease ABC subunit A
       0.02   12.4   0.0      0.023   12.2   0.0    1.1  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
       0.02   11.2   0.1      0.025   10.8   0.1    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.021   12.1   0.0      0.021   12.1   0.0    1.2  1  TIGR00073 hypB: hydrogenase accessory protein HypB
      0.022   12.4   0.0      0.024   12.3   0.0    1.1  1  TIGR00101 ureG: urease accessory protein UreG
      0.025   12.3   0.0      0.032   11.9   0.0    1.2  1  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.027   10.2   0.0      0.027   10.2   0.0    1.0  1  TIGR00618 sbcc: exonuclease SbcC
       0.03   11.8   0.0       0.03   11.8   0.0    1.1  1  TIGR00235 udk: uridine kinase
      0.032   11.4   0.0      0.033   11.4   0.0    1.2  1  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.7e-11   9.2e-10     483     520 ..       5      42 ..       2      61 .. 0.94

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.7e-11
    TIGR03375 483 LknvslkikpGekvaiiGriGsGKstllklllglyept 520
                  L++++l+i+  ++vaiiG++GsGK+tl kll+g ++p+
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42 
                  899******************************99987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.5e-10   8.4e-09       8      46 ..       5      43 ..       2      57 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.5e-10
    TIGR01166  8 lkglnlavergevlallGanGaGkstlllhlnGllrPks 46
                 l+++ l+++  +++a++G+nG+Gk+tl++ l G l+P s
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43
                 88999********************************87 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     4e-10   2.2e-08     337     394 ..       4      63 ..       1      67 [. 0.88

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 4e-10
    TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpds..GelkiGetvklayvdqsr 394
                  l++d+++++  ++ v +iG nG+Gk+tl+kl+ g+ +pds  G ++    +k+a++ q++
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSkvGVFHRHPNIKVAHISQHH 63 
                  88999******************************9999755888888999999999875 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   7.6e-10   4.1e-08     489     528 ..       4      43 ..       1      67 [. 0.73

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 7.6e-10
    TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaes 528
                  +l+d++l+i+ +++++++G  GsGk+tl+kll +  +++s
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  79******************************98775544 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     8e-10   4.4e-08     494     534 ..       4      44 ..       1      66 [. 0.82

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 8e-10
    TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsG 534
                  l++d++ls++  +rvA++G  GsGk t+ kl++G  +p s 
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSK 44 
                  899*******************************8877654 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.3e-09   7.3e-08     338     393 ..       5      63 ..       2      67 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.3e-09
    TIGR02857 338 lkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv...ngaelaeldads 393
                  l+++ l+++  ++va++G+ G+GK+tl+kll g ++p++   +     + ++a++++++
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFhrhPNIKVAHISQHH 63 
                  678999******************************98754433666666677777665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.7e-09   9.1e-08      18      71 ..       5      61 ..       3      67 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.7e-09
    TIGR03411 18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk...dltklke 71
                 l+d++ls++ ++  +iiG nG+Gkttl+ +++G  +pd+   +f+ +   +++++++
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHpniKVAHISQ 61
                 67999*******9************************98777776665233344444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.2e-09   1.2e-07      15      54 ..       4      43 ..       2      64 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.2e-09
    TIGR03410 15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvks 54
                 +l+d++l+++ ++ va++G+ng Gkttl+k l+g l+  s
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43
                 69********************************876544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.7e-09     2e-07      15      68 ..       4      57 ..       1      68 [] 0.76

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.7e-09
    TIGR01189 15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr 68
                 ll++++++++    +++ G+nG+GKttL+++l G l+p+s    ++ ++  +++
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHPNIKVA 57
                 7889999999999************************99865555544444444 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.7e-09   2.6e-07      16      59 ..       3      45 ..       1      68 [] 0.79

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 4.7e-09
    TIGR02673 16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGev 59
                 + L+d++l+i+  + + ++G+ G+Gkttl+kll+g ++p++ +v
  MMETSP1174-20130828|18365_1  3 WLLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS-KV 45
                 579**********************************9975.33 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.1e-08     6e-07      16      62 ..       5      51 ..       2      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.1e-08
    TIGR03740 16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr 62
                 +++++l++  +s  +++G nG+Gk+tl+kll+G l+++s   +++ +
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRH 51
                 67889999999999***********************9987777666 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.5e-08   8.1e-07     351     389 ..       5      43 ..       2      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.5e-08
    TIGR02868 351 lkgvsldlepGervavvGasGaGKstLlallaglldplk 389
                  l++++l ++  +rva++G+ G+GK+tL++ll g l p++
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  67889999999***********************99975 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.6e-08   8.8e-07      24      84 ..       5      64 ..       3      68 .] 0.91

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.6e-08
    TIGR02324 24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserev 84
                 l++++l+++    va++Gk G+Gk tl+k l ++ +p+ +++ v h+   ++++++s++++
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD-SKVGVFHRHPNIKVAHISQHHI 64
                 678899999999**************************.7899999999999*****9988 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.6e-08   8.7e-07      10      48 ..       6      44 ..       4      61 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.6e-08
    TIGR01188 10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsG 48
                 ++++l+++ ++ ++++G nG GKtt++k+L++ l+Pds 
  MMETSP1174-20130828|18365_1  6 HDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSK 44
                 678999999999************************985 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.9e-08   1.1e-06      13      70 ..       4      61 ..       2      67 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.9e-08
    TIGR03608 13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskka 70
                 +l+++ l+i+  + vai+G+ GsGK+tl+ +l    ++ds   +++ + ++k+ + ++
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHPNIKVAHISQ 61
                 6899**************************9976666666555555555555555544 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     2e-08   1.1e-06      20      57 ..       4      41 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2e-08
    TIGR02211 20 vlkgvsleiekgelvaivGssGsGkstllhllggldkp 57
                 +l+++ l+i+    vai+G+ GsGk+tl+ ll g  +p
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41
                 5899****************************985555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.3e-08   1.8e-06      15      55 ..       3      43 ..       1      63 [. 0.90

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.3e-08
    TIGR03873 15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapda 55
                 +++ d++++    +  +++G nGsGk+tl++ll G l+pd 
  MMETSP1174-20130828|18365_1  3 WLLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43
                 7889999999999999**********************986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.7e-08     2e-06      26      74 ..       4      52 ..       1      66 [. 0.81

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.7e-08
    TIGR02769 26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqd 74
                 +l+++ ls+     va++G+ G+Gk+tl +ll G  +P +    f+ ++
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHP 52
                 699*******************************999976554454444 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.8e-08   2.1e-06     349     387 ..       5      43 ..       2      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.8e-08
    TIGR02203 349 ldsislkveaGevvalvGrsGsGkstlvnllpRFyepds 387
                  l+++ l+++   +va++G+ GsGk+tlv+ll   ++pds
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  789999*************************98888876 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.8e-08   3.2e-06     359     395 ..       7      43 ..       2      51 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 5.8e-08
    TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqe 395
                   + l i+    v i+G+nG Gk+tl+kll+G   p +
  MMETSP1174-20130828|18365_1   7 DMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  56788999999********************999976 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.6e-08   4.2e-06     334     370 ..       5      41 ..       2      62 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.6e-08
    TIGR01842 334 lkgisfalkaGealaiiGpsgsGkssLarllvGvwlp 370
                  l++++++++  + +aiiG  gsGk++L++ll G  +p
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41 
                  8899*****************************8776 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.6e-08   5.2e-06      19      76 ..       5      65 ..       2      68 .] 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 9.6e-08
    TIGR00960 19 ldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq...dltklrdrevp 76
                 l+++t++i++ + v ++G+ G+Gk+tl+kl++g  +p +    +  +   ++++++++++ 
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHpniKVAHISQHHIE 65
                 899******************************9999875545554421246666666665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     1e-07   5.5e-06     468     506 ..       4      42 ..       1      51 [. 0.90

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1e-07
    TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe 506
                   L+d++l+i+    vai+G+ GsGK tl++lL g  +P+
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42 
                  6999****************************9977776 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-07   5.6e-06      15      51 ..       4      40 ..       2      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1e-07
    TIGR01978 15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghek 51
                 +L++++l+++    +ai+G+nGsGk tL+k l g+ +
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELH 40
                 6899*****************************9754 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     1e-07   5.5e-06      23      62 ..       4      43 ..       1      65 [. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1e-07
    TIGR03258 23 vlddlsleieaGellallGksGsGkttllravaGfvkadG 62
                 +l+d++l i     +a++Gk GsGkttl++++ G +++d 
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43
                 689*******************************999986 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.6e-07   8.8e-06      17      52 ..       8      43 ..       2      66 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.6e-07
    TIGR01277 17 fdlsveaGervailGesGaGkstllnliaGflepas 52
                 + ls++   rvai+G+ G+Gk+tl++l+ G l+p s
  MMETSP1174-20130828|18365_1  8 MTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43
                 567788889*********************999976 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.1e-07   1.1e-05      16      60 ..       5      49 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.1e-07
    TIGR00968 16 lddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrille 60
                 l+d+ l++   s va++G  GsGk+tl++++ G  +pds   +++
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFH 49
                 78999****************************999999765555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.3e-07   1.2e-05      17      73 ..       5      60 ..       3      66 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.3e-07
    TIGR02633 17 ldnidlklraGeivslcGenGaGkstlmkvlsg.vyphGtydGeilfegeelkassir 73
                 l++++l +     v++ G+nG+Gk+tl+k+l+g ++p    +  +++   ++k  +i+
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGeLHPDS--KVGVFHRHPNIKVAHIS 60
                 788999999999********************9455543..34456666666666665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.7e-07   1.5e-05      17      67 ..       4      55 ..       1      67 [. 0.79

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.7e-07
    TIGR02315 17 alknvnleikkGelvaviGlsGaGkstllrsin.rlveissgsillegkevt 67
                  l+++ l+i+    va+iG+ G+Gk+tl++ +  +l+ +s+  ++ ++ +++
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCgELHPDSKVGVFHRHPNIK 55
                 58999*************************9862577777777777776665 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     3e-07   1.6e-05      17      54 ..       5      42 ..       2      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3e-07
    TIGR03864 17 lddvsltvakgefvaLLGpnGaGkstLfslltrLyeak 54
                 l+d++l+++  + va++G nG+Gk+tL++ll + ++ +
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42
                 7899999999999******************9876654 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.1e-07   2.2e-05      15      50 ..       7      42 ..       3      51 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.1e-07
    TIGR02142 15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpd 50
                 d+ l+++ + ++a+ G+ GsGkt+l++l+ G ++pd
  MMETSP1174-20130828|18365_1  7 DMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42
                 55667777789********************88886 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   8.4e-07   4.6e-05     436     461 ..      14      39 ..       2      48 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 8.4e-07
    TIGR00929 436 vlGhTlIfGptgsGKTvllnfllaql 461
                  v   ++I+G++gsGKT+l+++l+ +l
  MMETSP1174-20130828|18365_1  14 VDSRVAIIGKNGSGKTTLVKLLCGEL 39 
                  556789****************9776 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-06   8.1e-05     496     533 ..       4      41 ..       2      63 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-06
    TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaallenlYqP 533
                  +l+d+t++++  + va++G +GsGK t + ll    +P
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41 
                  589****************************9765555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.4e-06   0.00013     472     504 ..       4      36 ..       2      47 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.4e-06
    TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkstltkllq 504
                  +l++++l+i     + i+G+ GsGk+tl kll 
  MMETSP1174-20130828|18365_1   4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLC 36 
                  689****************************96 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.1e-06   0.00012      20      53 ..       4      37 ..       2      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.1e-06
    TIGR02982 20 vlfdinleiepgeiviltGpsGsGkttlltligg 53
                 +l+d+ l+i+ +  v + G+ GsGkttl+ l+ g
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCG 37
                 699***************************9976 PP

>> TIGR01618  phage_P_loop: phage nucleotide-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.8e-06   0.00015      12      64 ..      15      64 ..       6      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.8e-06
    TIGR01618 12 esriliYgkpGlGktsvikyleGktlvlslDksskvLaGdenvdiadlddekp 64
                 +sr+ i gk G Gkt+++k l G+   l  D    v   ++n+ +a++ ++++
  MMETSP1174-20130828|18365_1 15 DSRVAIIGKNGSGKTTLVKLLCGE---LHPDSKVGVFHRHPNIKVAHISQHHI 64
                 67899******************8...899*99*************9999986 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.8e-06   0.00015     354     392 ..       3      41 ..       1      56 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.8e-06
    TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstllelllrfydP 392
                  + l+++ l++    +va++G  G+Gk+tl++ll     P
  MMETSP1174-20130828|18365_1   3 WLLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41 
                  56899***************************9765555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.1e-06   0.00028      30      64 ..      18      51 ..       7      67 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 5.1e-06
    TIGR02323 30 lgivGesGsGkstllkalaarlladaGevtyesrs 64
                 ++i+G+ GsGk+tl+k l+++l +d+    + +r 
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLCGELHPDSKVGVF-HRH 51
                 69**********************9754444.444 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.1e-06   0.00033     177     222 ..      16      59 ..       5      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.1e-06
    TIGR03819 177 arlallvsGgtGsGkttLLsalLalvaedeRivlvedaaelrpdhp 222
                  +r  + + G  GsGkttL+  l +++++d ++ +    +++++ h 
  MMETSP1174-20130828|18365_1  16 SR--VAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHPNIKVAHI 59 
                  44..4578**************************999999999994 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.9e-06   0.00037     352     389 ..       6      43 ..       3      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 6.9e-06
    TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpks 389
                  +d+++ +     vai+g  g+gkttl+ ll    +p+s
  MMETSP1174-20130828|18365_1   6 HDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  788888999999******************87777764 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-05   0.00058      17      47 ..       5      35 ..       2      60 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-05
    TIGR00972 17 lkdvnleikknkvtaliGpsGcGkstllrsl 47
                 l+d++l+i+ ++ +a+iG+ G+Gk+tl++ l
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLL 35
                 789999*********************9976 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-05   0.00065      16      47 ..       5      36 ..       3      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.2e-05
    TIGR03005 16 ldglelevaaGekvaliGpsGsGkstilrilm 47
                 l+++ l+++   +va+iG  GsGk+t++++l 
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLC 36
                 7789999999******************9985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-05    0.0007      40      81 ..       4      45 ..       2      57 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.3e-05
    TIGR00955 40 llknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkv 81
                 ll++++  +     +A++G  G+GKtTL++ l    + ++kv
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKV 45
                 566666666666779*****************9988888776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-05   0.00074      19      62 ..       6      49 ..       2      68 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.4e-05
    TIGR03522 19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvava 62
                  ++++++   + v  +G nG+Gk+tl+k+l g l++ds     +
  MMETSP1174-20130828|18365_1  6 HDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKVGVFH 49
                 567777777788999**********************9755444 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-05   0.00074     303     338 ..       8      43 ..       3      58 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.4e-05
    TIGR03269 303 vslevkekeifGlvGtsGaGkttlskilaGvlepts 338
                  ++l +       ++G+ G+Gkttl k+l G l+p s
  MMETSP1174-20130828|18365_1   8 MTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  455555555567888888888888888888887754 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   1.9e-05     0.001       3      51 ..      19      65 ..      18      68 .] 0.81

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.9e-05
    TIGR00176  3 qivgykdsGKTtlieklvkelkargyrVatiKHdaheidldkegkDsar 51
                 +i+g+ +sGKTtl++ l  el+    +V++  H + +i++ +  + +++
  MMETSP1174-20130828|18365_1 19 AIIGKNGSGKTTLVKLLCGELHPDS-KVGV-FHRHPNIKVAHISQHHIE 65
                 79*******************9998.8876.488888887776666655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-05   0.00098      20      53 ..       5      38 ..       2      62 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.8e-05
    TIGR03265 20 lkdislsvkkgelvclLGPsGCGkttLLriiaGL 53
                 l+d+ ls++ +  v+++G  G GkttL+++++G 
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGE 38
                 899****************************994 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-05    0.0012      20      64 ..       5      48 ..       2      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-05
    TIGR01288 20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvl 64
                 ++d++++i+      ++g ng+gk+t+ +l+ g   pd  k+ v+
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS-KVGVF 48
                 6789999999999***********************996.55554 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-05    0.0013     138     172 ..       9      43 ..       4      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-05
    TIGR02788 138 klaiaakkniiisGgtgsgKTTflkalvkliPkee 172
                   l+i     + i+G+ gsgKTT++k l  ++  + 
  MMETSP1174-20130828|18365_1   9 TLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDS 43 
                  56788888999**************9988775555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-05    0.0014       1      38 [.       5      42 ..       5      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.5e-05
    TIGR01184  1 lkdvdleikkgefislighsgcgkstllnliaglekpt 38
                 l+d+ l+i+    +++ig+ g gk+tl+ l++g  +p 
  MMETSP1174-20130828|18365_1  5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42
                 678999**************************977774 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-05    0.0014     442     478 ..       5      41 ..       2      61 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
    TIGR01271 442 lknislklekgqllavagstgsgkssllmmilgelep 478
                  l++++l +     +a+ g  gsgk++l+ ++ gel p
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41 
                  4455555555555555555555555555555555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-05    0.0015      11      45 ..       7      41 ..       3      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.7e-05
    TIGR01186 11 dvdleieeGeiiviiGlsGsGkstlvrllnrlieP 45
                 d+ l+i     + iiG  GsGk+tlv+ll   + P
  MMETSP1174-20130828|18365_1  7 DMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHP 41
                 6778888888899***************9876666 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.7e-05    0.0015       1      39 [.       4      42 ..       4      64 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.7e-05
    TIGR02770  1 lvqdvnlslkrgkvlalvGesGsGksltalailglldke 39
                 l +d+ ls+  +  +a++G+ GsGk++  + + g l+++
  MMETSP1174-20130828|18365_1  4 LLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPD 42
                 6799**********************9988888777654 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.4e-05    0.0019      40      69 ..      15      44 ..       5      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.4e-05
    TIGR02928 40 psnvliyGktGtGKtavtkkvlkeleeaae 69
                  s+v i Gk G+GKt+ +k ++ el+ +++
  MMETSP1174-20130828|18365_1 15 DSRVAIIGKNGSGKTTLVKLLCGELHPDSK 44
                 6799********************998766 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.7e-05     0.002     467     521 ..       3      59 ..       1      63 [. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.7e-05
    TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvyg.glltkpeegklFyv 521
                   l++++++ +   + + iiG nG GK  l ++l gel P    g+    ++ k+ ++
  MMETSP1174-20130828|18365_1   3 WLLHDMTLSISVDSRVAIIGKNGSGKTTLVKLLcGELHPDSKvGVFHRHPNIKVAHI 59 
                  6889999999999******************98689999665566666666555555 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.1e-05    0.0039      19      44 ..      10      36 ..       5      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.1e-05
    TIGR00611 19 lelspgvn.vlvGeNgqGKtnlleaiy 44
                 l++s +   +++G+Ng+GKt l++ ++
  MMETSP1174-20130828|18365_1 10 LSISVDSRvAIIGKNGSGKTTLVKLLC 36
                 44443333379***********98776 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   0.00011    0.0058       4      26 ..      16      38 ..      13      58 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 0.00011
    TIGR00231  4 ikivivGhvdvGKstLlnsllkn 26
                  +++i+G+ ++GK+tL + l ++
  MMETSP1174-20130828|18365_1 16 SRVAIIGKNGSGKTTLVKLLCGE 38
                 589*************9988765 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   0.00013    0.0069       2      23 ..      17      38 ..      16      47 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 0.00013
    TIGR02528  2 rimliGsvgcGkttLtqaLkge 23
                 r+++iG+ g+GkttL++ L ge
  MMETSP1174-20130828|18365_1 17 RVAIIGKNGSGKTTLVKLLCGE 38
                 89**************999886 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00019      0.01     164     186 ..      17      39 ..      12      46 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00019
    TIGR01526 164 tvailGgestGkstLvrklaekl 186
                  +vai+G + +Gk+tLv+ l   l
  MMETSP1174-20130828|18365_1  17 RVAIIGKNGSGKTTLVKLLCGEL 39 
                  8***************9987666 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   0.00012    0.0065       4      42 ..      13      50 ..      10      66 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 0.00012
    TIGR03771  4 dkGellgllGpnGaGkttllrailglikvakGsvkvagk 42
                 +    ++++G nG+Gkttl++ + g ++    +v v  +
  MMETSP1174-20130828|18365_1 13 SVDSRVAIIGKNGSGKTTLVKLLCGELH-PDSKVGVFHR 50
                 5556799**************9988666.3444544443 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00013    0.0071       7      41 ..      18      52 ..      13      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00013
    TIGR00041  7 iviEGidGaGKTtqlellkkllkeeglkvlltrEP 41
                 ++i G +G+GKTt+++ll   l+  +   ++ r P
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHRHP 52
                 577799******************98888888887 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00017    0.0092       1      24 [.      20      43 ..      20      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00017
    TIGR01187  1 lLGpsGsGkttlLrllaGleelds 24
                 ++G  GsGkttl++ll G  ++ds
  MMETSP1174-20130828|18365_1 20 IIGKNGSGKTTLVKLLCGELHPDS 43
                 689***************988887 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00018    0.0099     654     689 ..       5      40 ..       1      64 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
    TIGR00957 654 lngltlsipegalvavvgqvgcgkssllsallaemd 689
                  l+ +tlsi   + va++g+ g gk++l+  l +e++
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELH 40 
                  788899999999999999999999999998888874 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00021     0.012     138     176 ..       7      45 ..       5      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00021
    TIGR02546 138 DglltvgeGqRiGifaeaGvGkstLlsmiargakadviv 176
                  D  l ++   R+ i ++ G+Gk+tL++ ++ + + d  v
  MMETSP1174-20130828|18365_1   7 DMTLSISVDSRVAIIGKNGSGKTTLVKLLCGELHPDSKV 45 
                  5668889999********************987777655 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022     0.012     356     386 ..      10      40 ..       4      47 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00022
    TIGR03925 356 ldfaeephllvlGdsesGktallraiaeevv 386
                  l ++ ++ + ++G+++sGkt+l++ ++ e+ 
  MMETSP1174-20130828|18365_1  10 LSISVDSRVAIIGKNGSGKTTLVKLLCGELH 40 
                  5566778899****************98875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00025     0.014     176     198 ..      16      38 ..       6      40 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00025
    TIGR03594 176 ikiaiiGrpNvGKStLvNallge 198
                   ++aiiG+  +GK tLv  l+ge
  MMETSP1174-20130828|18365_1  16 SRVAIIGKNGSGKTTLVKLLCGE 38 
                  58999999999999999999887 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034     0.018     623     651 ..       5      33 ..       2      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00034
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                  l+d+++si ++  ++i G  gsGk tL++
  MMETSP1174-20130828|18365_1   5 LHDMTLSISVDSRVAIIGKNGSGKTTLVK 33 
                  789999*******************9996 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00042     0.023       4      36 ..      18      50 ..      16      64 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00042
    TIGR02322  4 ilvvGpsGaGKDtlldlararladeprvlfarR 36
                 ++++G  G+GK tl++l+  +l+ +++v + +R
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLCGELHPDSKVGVFHR 50
                 789********************9999999999 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00046     0.025      18      45 ..       6      32 ..       5      36 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00046
    TIGR03185 18 qevdLsvssekpiiLlgglNGaGKTTlL 45
                 + + Ls+s++  + ++ g NG+GKTTl+
  MMETSP1174-20130828|18365_1  6 HDMTLSISVDSRVAII-GKNGSGKTTLV 32
                 5678999999888877.58*******97 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00039     0.021      33      63 ..      18      48 ..       9      65 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00039
    TIGR00073 33 lnllssiGsGktlllekliealkkevkiavi 63
                 + +++  GsGkt+l++ l  +l+ + k++v 
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLCGELHPDSKVGVF 48
                 578999*******************999986 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00044     0.024       3      34 ..      17      48 ..      15      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00044
    TIGR00101  3 kigvagpvgsgktaliealtrelakkydlavi 34
                 ++ + g  gsgkt+l++ l+ el+ + ++ v 
  MMETSP1174-20130828|18365_1 17 RVAIIGKNGSGKTTLVKLLCGELHPDSKVGVF 48
                 7899*******************999988875 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00058     0.032       2      20 ..      18      36 ..      17      42 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00058
    TIGR00152  2 igltGgigsGKstvakilk 20
                 ++++G+ gsGK+t++k+l 
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLC 36
                 89*************9985 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0005     0.027      30      45 ..      18      33 ..       6      45 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0005
    TIGR00618 30 fvicGktGaGKtsLld 45
                  +i Gk+G+GKt+L+ 
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVK 33
                 5799**********75 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00055      0.03       9      38 ..      18      48 ..      10      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00055
    TIGR00235  9 igiaGasgsGkttvaekivellkk.ekivli 38
                 ++i G  gsGktt+++ ++ +l+  +k+++ 
  MMETSP1174-20130828|18365_1 18 VAIIGKNGSGKTTLVKLLCGELHPdSKVGVF 48
                 89*****************999864666665 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0006     0.033       2      23 ..      17      38 ..      16      67 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0006
    TIGR00436  2 fvailGrpnvGKSTLlNkllgq 23
                 +vai+G+   GK TL+  l+g+
  MMETSP1174-20130828|18365_1 17 RVAIIGKNGSGKTTLVKLLCGE 38
                 79***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      249  (0.0607021); expected 82.0 (0.02)
Passed Vit filter:                       137  (0.0333983); expected 4.1 (0.001)
Passed Fwd filter:                        75  (0.0182838); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              75  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 190.96
//
Query:       MMETSP1174-20130828|18367_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 1098.89
//
Query:       MMETSP1174-20130828|18366_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 2461.42
//
Query:       MMETSP1174-20130828|18370_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1535.87
//
Query:       MMETSP1174-20130828|18372_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 691.21
//
Query:       MMETSP1174-20130828|18378_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       502  (0.122379); expected 82.0 (0.02)
Passed bias filter:                      321  (0.0782545); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 348.30
//
Query:       MMETSP1174-20130828|18379_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07    8.6   2.3       0.11    7.9   0.2    1.8  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1    0.0055        23     173     204 ..      81     112 ..      67     146 .. 0.68
   2 ?    7.9   0.2   2.8e-05      0.11     690     764 ..     232     306 ..     223     307 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.0055
    TIGR02169 173 kekaleeLeeveeriervelvieevrqqlerL 204
                   ++a +e+ + +  i++ve+v+ee+++q+  L
  MMETSP1174-20130828|18379_1  81 YRQAAAEMRQSSGGIKEVESVLEELETQMRLL 112
                  34555555555555555555555555555444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 2.8e-05
    TIGR02169 690 eleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkel 764
                  e +sl   +++++ +++ l+ kls++ k+  ++ ++  q+ +++e+lk + +e+ ++l+ l++ + e+ ++ ++l
  MMETSP1174-20130828|18379_1 232 EHNSLDTVREQVQGHIKLLQGKLSASLKRWLQLTQDCAQIPQQREQLKGEYTEVIQSLEVLDRRIIEVTQKCADL 306
                  667778888888899999999999999999999999999999999999999999999999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1174-20130828|18381_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|18382_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 935.92
//
Query:       MMETSP1174-20130828|18383_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   12.1   0.2       0.14    8.3   0.0    2.0  2  TIGR03196 pucD: xanthine dehydrogenase D subunit


Domain annotation for each model (and alignments):
>> TIGR03196  pucD: xanthine dehydrogenase D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   3.4e-05      0.14     642     692 ..      55     105 ..      43     111 .. 0.88
   2 !    2.1   0.0    0.0025        10     653     695 ..     112     154 ..     108     194 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 3.4e-05
    TIGR03196 642 laidaGtvlsplalrGqveGGaaqalGlalmeelktvdGvvvaetlddyll 692
                  +  ++  + +   + Gq  GG   + G+  +e+  +  G +++e+l+ y +
  MMETSP1174-20130828|18383_1  55 KVTASTXLTNGNRYEGQFHGGQIEGYGINTLENGDILRGTFTNEKLEGYAI 105
                  5566667788999**********************************9977 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0025
    TIGR03196 653 lalrGqveGGaaqalGlalmeelktvdGvvvaetlddyllpti 695
                  + +rG   GG   ++G   + e +t +G   ++ +d y + t+
  MMETSP1174-20130828|18383_1 112 QEYRGEYVGGLRDGFGKLDLSESVTFEGEWKNDVIDGYGILTV 154
                  78************************************88776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 935.57
//
Query:       MMETSP1174-20130828|18384_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|18385_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 712.05
//
Query:       MMETSP1174-20130828|18388_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.9   0.0      0.039   11.4   0.0    1.1  1  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.4e-06     0.039      19      62 ..     115     157 ..     103     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.4e-06
    TIGR01385  19 nveqvidilkqLkklpvteellketkvGlkvnklrkkpnedikk 62 
                  ++e+++ +l +L+++p+ + +l + k+G  +++lrk  n+++ +
  MMETSP1174-20130828|18388_1 115 SDEEALSLLAELERMPIDTRMLFDSKIGTLLKRLRKA-NDQVRD 157
                  67899*****************************985.566654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 810.79
//
Query:       MMETSP1174-20130828|18391_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1095.51
//
Query:       MMETSP1174-20130828|18396_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|18398_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 564.37
//
Query:       MMETSP1174-20130828|18403_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-49  166.4   0.0    1.7e-47  160.0   0.0    2.3  1  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
      1e-37  128.3   0.0    7.1e-36  122.3   0.0    2.3  1  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase


Domain annotation for each model (and alignments):
>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   8.4e-51   1.7e-47      48     358 ..      26     378 ..       3     386 .. 0.82

  Alignments for each domain:
  == domain 1    score: 160.0 bits;  conditional E-value: 8.4e-51
    TIGR02409  48 kikkviiddd..gnlvvifvpeghlsefsaeWLkkraydkqe.lrerelaeeekqrWgkatielslpkldfeevlkdeevllewLsavrkvGlvvlegvptkeGavlkvgdrlgfiretnyGllfevrakv..dannlAYtnlgLslHtDlPardhvPtlqlLhclest.............veGGds.......llvDGFavaeaLrkekpeafkiLsstsvefreeGddkvdlr..........akakvieLdddge........vvkirfnnasldavfdvevekvqdfYaAlrrfvelieepelkltfkleeGdlvlfdntRllHaRdafeakegkRhlqGaYaDkDvll 358
                  ++ ++   dd    ++++  ++gh s f+   L k+   +    +  e  e   ++W+ at+ + +pk+ f+++  d+   l  L+ + + G+  ++gvp+ eG+ ++++d ++ +r t++G+ f+v+     d ++lAY    +++HtD+ +rd++P+ qlLh +++              v+G +        ++ DGF va++L  e+p af++Lss +v+f+++G d++ +            +a +i+ +++ +        v+ irf+ +s      ++++ +++fY+A r f+ l++ p +++  +l +Gd+++fdn+RllHaR++   ++g+R lqG+Y+++D+++
  MMETSP1174-20130828|18403_1  26 NASAIRYRDDpaRDILKVHYKDGHRSDFRIAELAKELAGDLVpVQVLEQEEVLPRLWN-ATSLGPVPKIHFNALRSDDTERLRALRHLLEEGILLVQGVPKAEGQCVEMADFFSTLRSTEWGKEFNVKPAPdgDKKDLAYGGSAIGMHTDNCYRDPTPSFQLLHAIRHCecdpekddprhvvVDGKNCsactvfnTFTDGFFVADKLSREDPRAFELLSSVPVRFENNGGDNSSFLnfqvphfqlhQHADIIRKKNNKHggrcgaecVRSIRFSSKSGGYAPPLDPAILSEFYRAKRLFSTLVHGPPQNVFLQLAPGDMIIFDNERLLHARSSIAHSDGDRFLQGCYFNRDGIV 378
                  55555544442245888899999999999888877655444336666666667789*9.8899****************************************************************98661156689**************************9976411122222222224565532333333689******************************999888767889***998777888766553222344445999*********************************************************************************986 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   3.4e-39   7.1e-36      41     354 ..      28     378 ..       3     385 .. 0.74

  Alignments for each domain:
  == domain 1    score: 122.3 bits;  conditional E-value: 3.4e-39
    TIGR02410  41 aeveidede....lrvkWkDgHvskfeedwlvrhsyepkkekkkskkalklvakkiyekaeskklkkasakfkt.tldkldlkkflkeiykyGfilvdnvpvsseateklsekisiirethyggvWdF..tsdlskkDtAYtsleissHtDgtYfeetpGlqlFHlLkh...............dgtGGe........tvlvDvfkvaeklkkkapedfelLtkvkieahsageseevfieaevlepvlkldpatgeleqvRwnts.DRasldtlaks.............skeevpkfYkAleklskiikdpenevevklkpGevlifDnwRvlHaRtsF...tGkRrlCGaYltRDdfl 354
                  + ++ ++d     l+v++kDgH s f++  l++    +++  ++   + ++v  + ++ ++      ++ +f++ + d ++  + l+++++ G+ lv++vp ++++  ++++  s++r t +g+ ++   + d  kkD AY+  +i++HtD  Y + tp  ql H ++h               d   G+        +++ D+f va+kl  + p  felL+ v++++++ g+ +++f + +v  p ++l+ ++ ++++ + n++  R   +++ +               ++   +fY+A + +s++++ p  +v+++l+pG+++ifDn R+lHaR s     G R l G+Y++RD ++
  MMETSP1174-20130828|18403_1  28 SAIRYRDDPardiLKVHYKDGHRSDFRIAELAK-ELAGDLVPVQVL-EQEEVLPRLWNATSLG--PVPKIHFNAlRSDDTERLRALRHLLEEGILLVQGVPKAEGQCVEMADFFSTLRSTEWGKEFNVkpAPDGDKKDLAYGGSAIGMHTDNCYRDPTPSFQLLHAIRHcecdpekddprhvvvD---GKncsactvfNTFTDGFFVADKLSREDPRAFELLSSVPVRFENNGGDNSSFLNFQV--PHFQLH-QHADIIRKKNNKHgGRCGAECVRSIrfssksggyapplDPAILSEFYRAKRLFSTLVHGPPQNVFLQLAPGDMIIFDNERLLHARSSIahsDGDRFLQGCYFNRDGIV 378
                  45555444334459******************9.677888777754.2344444444444433..333445554134467788899*************************************655542267999*******************************9985554422222211111...221112212223457788899999999999****************9999999999..999999.77888888888763688888876433333334555544567789*****************************************9973336*************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.56
# Mc/sec: 959.28
//
Query:       MMETSP1174-20130828|18406_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|18415_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|18416_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 643.45
//
Query:       MMETSP1174-20130828|18417_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|18419_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-89  296.4   0.1    4.8e-89  296.2   0.1    1.0  1  TIGR00798 mtc: tricarboxylate carrier


Domain annotation for each model (and alignments):
>> TIGR00798  mtc: tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.2   0.1   1.2e-92   4.8e-89      12     317 .]       2     309 .]       1     309 [] 0.95

  Alignments for each domain:
  == domain 1    score: 296.2 bits;  conditional E-value: 1.2e-92
    TIGR00798  12 qstflgrarhflevtdpltllssekklekareiledykk.gkvsn.ltseelwkakklvdsalHPdTgekvlllgRmsaqvpanlvvtggmlllykslpavvfwqWlNQSfNavvNyaNrsgdkkltseellksYvaAvtaalavalglnklvkkakslspligrl...vPfaAvalAnaiNiplmRknElkeGievvdedgetvgkSkkaaakaiaqvvlsRvll.avPlmvlpplilnrlertallkkrpkv.ilvqtlligltllvalPlalalfpqksaieveklepslqkkkkkskqpvkkvyynkGl 317
                  qst++gr+rhf+e+td + ll++e++l++a  +l+++k+ g++ + + +ee+wka++ +++++HP Tge+++++gRmsa+vpan++ t+gml+   + ++++fw+W+NQ +N++ Ny+Nrsg + +ts +l ++Y+ Av++++++a+g+ +lvk+ +   p+i+rl   vP+aAv++A+a N++  R+ E+ +G+ +   dg+t+g Sk+aa+++i+ +vlsR++  ++  m+lpp+i+  l+r  ++++  +v + +++l ++ +l v+lPla+a+fpq+ +i+ +klep+++ +k+ +++p+  v++nkGl
  MMETSP1174-20130828|18419_1   2 QSTYAGRLRHFIEMTDMRSLLTTEAQLQQAVALLDEFKStGQLPScVSDEEMWKARQTKEAIIHPVTGERMFMPGRMSAFVPANTIPTAGMLMA-TTPSQMLFWHWMNQTVNVMCNYTNRSGATVNTS-QLAQAYALAVGTSCTIAVGASELVKRGP---PIIKRLgiaVPYAAVVAAGAGNVAFTRWPEVDNGVPIQAPDGRTLGLSKAAATESIKFTVLSRNCAlPIIPMLLPPIIMAGLRRVPIIAAGGAVaAAAEVLSVSACLGVGLPLAIAIFPQEMQISTSKLEPEFHGLKDLNGKPIDFVRCNKGL 309
                  89***********************************9637888799*******************************************9975.67899**********************998888.**************************97...999997777******************************************************853133349******************999989999999**************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 867.76
//
Query:       MMETSP1174-20130828|18418_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 2331.81
//
Query:       MMETSP1174-20130828|18422_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|18426_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 246.95
//
Query:       MMETSP1174-20130828|18427_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 253.28
//
Query:       MMETSP1174-20130828|18430_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 604.60
//
Query:       MMETSP1174-20130828|18432_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 888.73
//
Query:       MMETSP1174-20130828|18437_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 271.52
//
Query:       MMETSP1174-20130828|18435_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1027.37
//
Query:       MMETSP1174-20130828|18438_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 123.74
//
Query:       MMETSP1174-20130828|18433_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1129.83
//
Query:       MMETSP1174-20130828|18441_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 781.78
//
Query:       MMETSP1174-20130828|18444_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   16.7   0.0    0.00031   16.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.7e-08   0.00031      56     186 ..      16     140 ..       2     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.7e-08
    TIGR03903  56 avFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLR..gepvtaksDlYaWGLivleCLtGk 186
                  ++ e+ eG tl + +  +G +  ++ + L    L  + a h+   +hR++k + im  a d+ ++ ++     g       +  ++ +t +   +   +  aPe  R  g      sD+++ G++++ C+ G 
  MMETSP1174-20130828|18444_1  16 TIVEHCEGGTLFDYVIMNGKVGEQDCVVLFRELLLCVRAIHQCSCLHRNIKTEKIMFLAPDTFPEFRL-----GGFSR---ACRVEDATTSFMSVFCNQDVAPETSRmdGRKQGYYSDVWSLGVLFFVCIAGS 140
                  789********************************************************999887554.....44433...3333455666666777888899987732455667899999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 868.57
//
Query:       MMETSP1174-20130828|18447_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-07   26.7   0.1    6.5e-05   19.9   0.0    2.0  2  TIGR00261 traB: TraB family protein


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0   0.00052       2.1      90     117 ..       4      31 ..       2      41 .. 0.87
   2 !   19.9   0.0   1.6e-08   6.5e-05     147     212 ..      94     162 ..      78     172 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00052
    TIGR00261  90 Gsemkkaiekakkaglpvllidrdielt 117
                  G +m +a+e+a+k ++ v+l dr+   t
  MMETSP1174-20130828|18447_1   4 GADMIAALEQAEKLDAGVVLGDRQQSRT 31 
                  899********************86655 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.6e-08
    TIGR00261 147 levdelleedvleklvkelkkisPkvkkvliderdefiakkl...leaekrknsivavvGaGhveGivr 212
                  + ++ +++++ +  l + l++ sP + + li  rd f+ +k+   l a ++ ++ vavvG  h +G++ 
  MMETSP1174-20130828|18447_1  94 IILEAVKDRETVLLLKQFLQDLSPPLMDALITSRDDFMFAKMrqeLLAAQDGQTAVAVVGLAHLSGLED 162
                  55677788888888888899*****************988763222344557899***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 787.53
//
Query:       MMETSP1174-20130828|18443_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-34  115.6   0.0    7.3e-34  115.1   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.4e-31  106.7   0.0    1.3e-30  104.2   0.0    1.8  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      7e-10   35.1   0.0      1e-09   34.5   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    9.5e-10   35.2   0.0    1.3e-09   34.7   0.0    1.1  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.8e-05   20.4   0.0    5.4e-05   19.9   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
      0.008   12.3   0.0      0.011   11.9   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
       0.01   11.9   0.0      0.015   11.3   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   1.3e-36   7.3e-34     226     405 ..     102     276 ..      93     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 1.3e-36
    TIGR00614 226 gksGiiYClsrkkveqvaaeLqkkglaaa.aYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkllekv.ekyensskCRRlillsyfeekqlkkasskkgteksCdnCkkrld 405
                  g s iiY ++rk++e+va  L ++g++a   +hag+ ++  ++ + kf   e++vvvat+afG+Gi++pdvR v+h++ ++s+ +  qesGRaGRDg ++ cvlf   aD+++  +ll    +  +r  +l+ l+ + e+ +   +CR +++ ++     + +  s  ++  + d  kk++ 
  MMETSP1174-20130828|18443_1 102 G-STIIYTPTRKEAEEVAGVLSELGVQAVePFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRVLHWGWTQSLTALCQESGRAGRDGKPALCVLF---ADLTTPPSLLPGGDQA-RRALRLEALSELyEYGRRRDRCRAVVFTEHLRGGPMSDRQS--TAAYCTDKGKKTST 276
                  4.45**********************98527*************************************************************************8...9*******99988877.555666666655155577899********997744422222..23333344444444 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   2.2e-33   1.3e-30     225     402 ..     102     277 ..      89     282 .. 0.85
   2 ?   -0.2   0.1     0.093        54     381     397 ..     294     310 ..     289     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 104.2 bits;  conditional E-value: 2.2e-33
    TIGR01389 225 ksGiiYassRkkveelaeaLeskgieal.aYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdellayaet.kkCrrklllkyFgee.eveeCgnCdnCldpakavdat 402
                   s iiY+ +Rk+ ee+a  L++ g++a+ ++haG+ kk  +++  kF   +v+vvvat+aFG+Gid++dvR v+h    ++l +  qe+GRaGRDG++a ++l+   aDl+    l+     +++r+  + + L+el++y +   +Cr+++  ++       +   +   C+d+ k+  ++
  MMETSP1174-20130828|18443_1 102 GSTIIYTPTRKEAEEVAGVLSELGVQAVePFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRVLHWGWTQSLTALCQESGRAGRDGKPALCVLF---ADLTTPPSLLPG--GDQARRALRLEALSELYEYGRRrDRCRAVVFTEHLRGGpMSDRQSTAAYCTDKGKKTSTA 277
                  689**********************99846**********************************************************************9987...688888888877..577788888889999999976415788888888876553445555666677766666555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.093
    TIGR01389 381 eeveeCgnCdnCldpak 397
                  ++ ++Cg Cd+Cl+ a+
  MMETSP1174-20130828|18443_1 294 DDGDPCGICDVCLSYAT 310
                  3789*********8766 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.7e-12     1e-09     249     344 ..     102     194 ..      92     205 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.7e-12
    TIGR04121 249 rttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                   +t+++t tR+ aE +   L e+  +    +  +H+ + k+  ++  a++++g++r+vv+T ++ LG+D  dv +v++ G  ++++ l Q  GR++
  MMETSP1174-20130828|18443_1 102 GSTIIYTPTRKEAEEVAGVLSELGVQ---AVEPFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRVLHWGWTQSLTALCQESGRAG 194
                  68****************99999888...67789************************************************************97 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   2.3e-12   1.3e-09     304     383 ..     127     206 ..      99     211 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2.3e-12
    TIGR03817 304 ervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlva 383
                  + v  + aG  +   ++  +++++Ge++ v+at a+ lG+d   +  v+  G+   +++l q +GraGr+g+ al vl a
  MMETSP1174-20130828|18443_1 127 QAVEPFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRVLHWGWTQSLTALCQESGRAGRDGKPALCVLFA 206
                  45777888888888888999**********************************************************98 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.2e-08   5.4e-05     478     564 ..     122     207 ..      97     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9.2e-08
    TIGR00643 478 kafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvae 564
                  + ++  +v+ +h+ ++++  ++  ++Fr++ev ++vaT    +G+d P++  + +       l++L Q  GR gR  k + c+L a+
  MMETSP1174-20130828|18443_1 122 SELGVQAVEPFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRV-LHWGWTQSLTALCQESGRAGRDGKPALCVLFAD 207
                  445666778899*************************************9865.55566779**********************983 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.8e-05     0.011     690     789 ..     132     237 ..     110     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvp...sqkkl..tekalk..RLeaiqefselG 789
                   H+ m ++ l+++  +F ++e+ v v+T     Gid p++  + ++   +  l+ L Q  GR GR  k a + l        + l   ++a++  RLea++e  e+G
  MMETSP1174-20130828|18443_1 132 FHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRV-LHWGWTQSLTALCQESGRAGRDGKPALCVLFADlttPPSLLpgGDQARRalRLEALSELYEYG 237
                  699*************************************986.57888899******************9988543100233332224444333677777777776 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.6e-05     0.015     446     552 ..     104     207 ..      97     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.6e-05
    TIGR00631 446 vlvttltkkmaedltdylkelgik.vkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGk.vilyad 552
                  +++ t t+k ae+++  l+elg++ v+ +h  +     ++   ++r ge+ v+v    +  G+D P+v  v      + G+ +s ++L q  Gra r+ +    +l+ad
  MMETSP1174-20130828|18443_1 104 TIIYTPTRKEAEEVAGVLSELGVQaVEPFHAGMPKKLLQNTHAKFRSGEVRVVVATMAFGLGIDRPDVRRVL-----HWGWTQSLTALCQESGRAGRDGKPAlCVLFAD 207
                  789999*****************84689*****9888888999*************************9885.....67******************977541455666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.47
# Mc/sec: 1743.94
//
Query:       MMETSP1174-20130828|18450_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1015.92
//
Query:       MMETSP1174-20130828|18455_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.3   0.1      0.018   12.6   0.1    1.3  1  TIGR01280 xseB: exodeoxyribonuclease VII, small subunit


Domain annotation for each model (and alignments):
>> TIGR01280  xseB: exodeoxyribonuclease VII, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.3e-06     0.018      32      64 ..      94     126 ..      92     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-06
    TIGR01280  32 lferGiaLakacekkLeeAeqkvekllkeedea 64 
                   f++G++ +++ e +L++  +kv  + k +  +
  MMETSP1174-20130828|18455_1  94 NFQKGMEFKREKERTLKGGPKKVTHVNKVSSTE 126
                  7**********************9997766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 552.93
//
Query:       MMETSP1174-20130828|18456_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|18453_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1326.18
//
Query:       MMETSP1174-20130828|18460_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-12   46.1   2.5    1.2e-12   45.9   1.7    1.0  1  TIGR00861 MIP: MIP family channel proteins
  ------ inclusion threshold ------
      0.021   12.8   0.9      0.027   12.5   0.3    1.4  1  TIGR00346 azlC: azaleucine resistance protein AzlC


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   1.7     6e-16   1.2e-12     124     224 .]      14     116 ..       2     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 6e-16
    TIGR00861 124 pklssvqalvvefiltaiLvlvilaltdkrealssgglaplaiGllvvlivlslgpltgtamNpARslGpalvaalvgfes...yfwvylvgPivGailgalvY 224
                  p ++ + a+ +e++ t i+++v l++t+ ++ + ++   +la+G+  ++  +   +++g  +NpA + G a+v+ +++ ++    +w+y+ gP++G+  ++lv+
  MMETSP1174-20130828|18460_1  14 PIYTQLGAMTAEMVFTTIVIVVFLSVTTVDTDH-HNSYYGLAVGFCFMASSMCAEAVSGGVLNPAFATGLAMVDLMFNSSDsldDLWIYWAGPLLGSGGASLVF 116
                  348889999******************977775.5559**********************************9996554447777************9999986 PP

>> TIGR00346  azlC: azaleucine resistance protein AzlC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.3e-05     0.027     156     193 ..      23      60 ..      15      69 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
    TIGR00346 156 GlefvmtalfivifieqylkekkhksallGlgiavvsl 193
                    e+v t++ iv+f+     +++h++++ Gl++   ++
  MMETSP1174-20130828|18460_1  23 TAEMVFTTIVIVVFLSVTTVDTDHHNSYYGLAVGFCFM 60 
                  56899**************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 608.85
//
Query:       MMETSP1174-20130828|18457_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 1573.17
//
Query:       MMETSP1174-20130828|18461_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   18.7   0.0      0.021   10.7   0.0    2.8  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.3   0.0    0.0071        29     130     158 ..      73     100 ..      58     111 .. 0.86
   2 !   10.7   0.0   5.2e-06     0.021     127     158 ..     142     173 ..      99     175 .. 0.87
   3 !    4.8   0.0   0.00031       1.3     125     157 ..     174     206 ..     171     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.0071
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                  +g t+l+ A+ +++y i ++Ll+ ga+ +
  MMETSP1174-20130828|18461_1  73 RGWTPLHYAAGREEY-IHQILLDYGADAN 100
                  689**********99.7799999999876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5.2e-06
    TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasve 158
                  +  +g t+l+ A  + n+e+v  Ll++ga+ +
  MMETSP1174-20130828|18461_1 142 QCGHGNTPLHWASRHGNLEVVLELLNNGADAN 173
                  56689************************976 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.00031
    TIGR00870 125 tseftkgitalilAihkqnyeivklLlekgasv 157
                    e+++  t+l+ A +++   + ++Ll +ga+ 
  MMETSP1174-20130828|18461_1 174 IAEYQFARTPLHEAGIHDHAHLYHVLLSRGADP 206
                  6799999************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 1664.01
//
Query:       MMETSP1174-20130828|18465_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1174-20130828|18463_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1828.99
//
Query:       MMETSP1174-20130828|18471_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|18476_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|18484_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1174-20130828|18486_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 759.94
//
Query:       MMETSP1174-20130828|18494_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 375.97
//
Query:       MMETSP1174-20130828|18492_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|18498_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 788.55
//
Query:       MMETSP1174-20130828|18500_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 901.39
//
Query:       MMETSP1174-20130828|18503_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 622.64
//
Query:       MMETSP1174-20130828|18506_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|18504_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-62  210.3   0.0    6.5e-62  207.7   0.0    2.0  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    8.5e-10   36.1   0.0    2.9e-09   34.4   0.0    1.9  2  TIGR01789 lycopene_cycl: lycopene cyclase
    4.5e-09   34.2   0.1      0.019   12.5   0.0    3.2  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0059   13.3   0.0       0.17    8.5   0.0    2.6  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
      0.013   12.4   0.2      0.069   10.0   0.0    1.9  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.7   0.0   7.9e-65   6.5e-62       1     361 [.      47     472 ..      47     478 .. 0.85

  Alignments for each domain:
  == domain 1    score: 207.7 bits;  conditional E-value: 7.9e-65
    TIGR01790   1 DliviGgGlAglaiAlela...kpglrvqlieaapklpfnntygvweddlsdlg...........ladlvehrWsdayeyrfdeeark............lkraYgsvdraqlkeellqkleea.vlwleakaikveadav......slsl.......vecaggqriqarlVidargfkalvqyekaslavgfQaayGvevrlseePhd........vssmvlMDyrvdqlk.apelkeyr....ptFlYalplssdrlfiEeTsladkpalerdelkqrllarlaakgvkvkeieeeEqgvlPvnlslpsleqkvvavGaaAglvHPatgYsvaralseApklaaaiaqalalss............elataawkslwreerrrqryfrllglelllaleeeelrrvfqrFfgLpkelierFlaa 361
                  D+++iG+G+A l +A+ l        rv +++ +++  +  +yg+w ++  +l+           + + v+  W+d+  ++++++  k            l+r+Y++v+r  lk+ l     e+    ++  ++ ++  ++      s s+          + +++++a++++d++g+++ ++ +    + g+Q ayG e+r++   ++         ++m l Dyr++  + ap l  ++    ptF Y++pl +d +f+EeTsl+++pal ++e k rl+arlaa++v++ e++ eE +++P++++ p + q+vv +GaaAglvHP+tgY+varal +  ++ ++i++ l ++              +a+ ++   w +   rqr f ++g + l++ + e l+ +f  Ff+L+  ++++Fla+
  MMETSP1174-20130828|18504_1  47 DVVIIGSGPASLSLAALLGassSTPPRVAVLSKNADEQWIPNYGCWTEEWAKLDeiyatqgvpglMTKGVDVSWPDTDCFFGENSEEKvtsepegsfcrpLGRGYLRVSRSGLKSLLYSSEGERkYDVIKEDVLGAAIGTNifapsgSVSClpdctevTLKDSNRKLRAKIIVDGTGAESPFTIRDDRSKEGYQIAYGAECRVEGGGVTesrigdysRNKMTLFDYRSEAWRnAPGLDPQKvikePTFNYVMPLTKDIIFFEETSLVANPALSFQECKDRLTARLAAQDVRIVEVVDEELCYIPMGGATPRKGQRVVPIGAAAGLVHPSTGYQVARALISNVDVCDQIVKELGSTGegssnredfdpdLAAARVIGRTWTPAAVRQRNFAVFGGDFLMQQNVEGLKGFFSGFFKLDTPMWAGFLAG 472
                  9**************99876667788***********************99999999999*99998999*******999999987654223333333333889**************9999888777777776655443321111113333111111023456789**************888888899**************96555411111222689********98877887776556666***********************************************************************************************************999999********966778899*************************************************96 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.87   7.1e+02     203     241 ..      76     115 ..      74     123 .. 0.81
   2 !   34.4   0.0   3.5e-12   2.9e-09     115     278 ..     202     387 ..     175     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.87
    TIGR01789 203 eleeealrqriadyaa.akgwqlatlvreeqGvlPvllaG 241
                   l ++a +q i +y   +++w   + + + qGv  +++ G
  MMETSP1174-20130828|18504_1  76 VLSKNADEQWIPNYGCwTEEWAKLDEIYATQGVPGLMTKG 115
                  68899999999999753789**9999******98888777 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 3.5e-12
    TIGR01789 115 davdle.ngrvisasavidargfk.P....saalkvGfqaflGrevrlaePhGlesPiimdatvdqsd......................gyrfvyvlPldaqelliedtyyaddaeleeealrqriadyaaakgwqlatlvreeqGvlPvllaGdssalvdkvdivaiaGlraglvhPttgyslpvaveva 278
                   +v+l+ + r+++a+ ++d+ g + P        k G+q   G e r++   G+    i d + +++                          f yv+Pl  + ++ e+t  + ++ l  +  ++r++   aa++ ++ ++v ee   +P+  +G ++   + ++ v   G++aglvhP tgy ++ a+   
  MMETSP1174-20130828|18504_1 202 TEVTLKdSNRKLRAKIIVDGTGAEsPftirDDRSKEGYQIAYGAECRVE-GGGVTESRIGDYSRNKMTlfdyrseawrnapgldpqkvikEPTFNYVMPLTKDIIFFEETSLVANPALSFQECKDRLTARLAAQDVRIVEVVDEELCYIPM--GG-ATP-RKGQR-VVPIGAAAGLVHPSTGYQVARALISN 387
                  5667764567788888888887652311112345778888888888875.5678888888887777777778888888888888888887778****************************************************999996..34.333.33344.45579************999885443 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00032      0.26       1      22 [.      46      67 ..      46      84 .. 0.78
   2 !    9.3   0.0   0.00022      0.18     125     173 ..     203     250 ..     185     268 .. 0.80
   3 !   12.5   0.0   2.3e-05     0.019     222     286 ..     322     383 ..     288     388 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00032
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakk 22
                 yDvv++G Gpa  s+A+ l  +
  MMETSP1174-20130828|18504_1 46 YDVVIIGSGPASLSLAALLGAS 67
                 9**********98888877655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00022
    TIGR02032 125 kvevredekkevtakivigAdGakskvakklglkkekrelavalraeve 173
                  +v++++ ++++++aki+++ +Ga+s++  + +  ke +++a+ ++  ve
  MMETSP1174-20130828|18504_1 203 EVTLKD-SNRKLRAKIIVDGTGAESPFTIRDDRSKEGYQIAYGAECRVE 250
                  566666.799*****************9998877777777777755554 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 2.3e-05
    TIGR02032 222 dlkkklkeflaerpeklkdaeevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIaya 286
                  ++k++l + la+++  +  +e v+++   iP++  ++++  ++v+ +G AAglV P tG  +a a
  MMETSP1174-20130828|18504_1 322 ECKDRLTARLAAQD--VRIVEVVDEELCYIPMG-GATPRKGQRVVPIGAAAGLVHPSTGYQVARA 383
                  45566666666665..5556788899999****.677888889***************9666555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0002      0.17       1      36 [.      47      84 ..      47      96 .. 0.86
   2 ?   -1.5   0.0      0.22   1.8e+02     139     166 ..     199     227 ..     181     231 .. 0.79
   3 ?    1.3   0.0     0.032        27     240     295 ..     322     377 ..     309     380 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0002
    TIGR01988  1 divIvGgGlvGlalAlaLassa..dlkvalveakaaek 36
                 d+vI+G+G++ l+lA+ L +s+    +va+++++a e+
  MMETSP1174-20130828|18504_1 47 DVVIIGSGPASLSLAALLGASSstPPRVAVLSKNADEQ 84
                 9*****************99887778888888887665 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.22
    TIGR01988 139 sdaveltlsdget.leakLlvgADGanSk 166
                   d +e+tl+d ++ l+ak++v   Ga+S+
  MMETSP1174-20130828|18504_1 199 PDCTEVTLKDSNRkLRAKIIVDGTGAESP 227
                  57788999875544*******99999986 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.032
    TIGR01988 240 eflaelnaafgsrlgaitlvgeraafPLslthakryvaervaliGdAAhtvhPlAG 295
                  e  + l+a++  +  +i+ v + ++  + +  a     +rv+ iG AA  vhP +G
  MMETSP1174-20130828|18504_1 322 ECKDRLTARLAAQDVRIVEVVDEELCYIPMGGATPRKGQRVVPIGAAAGLVHPSTG 377
                  555555555555555555555555444555555556689**************877 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.098        81       1      20 [.      46      65 ..      46      82 .. 0.79
   2 ?   10.0   0.0   8.4e-05     0.069     240     291 ..     336     387 ..     314     412 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.098
    TIGR02023  1 ydvlviGggpsGaaaaetLa 20
                 ydv++iG+gp+  + a  L 
  MMETSP1174-20130828|18504_1 46 YDVVIIGSGPASLSLAALLG 65
                 89********9988777664 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 8.4e-05
    TIGR02023 240 laggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksG 291
                  +   +++ +e   iP+     ++ +rvv +G aaGlv +++G  +  a+ s 
  MMETSP1174-20130828|18504_1 336 VRIVEVVDEELCYIPMGGATPRKGQRVVPIGAAAGLVHPSTGYQVARALISN 387
                  566778889999******************************8887777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 1745.19
//
Query:       MMETSP1174-20130828|18510_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 162.45
//
Query:       MMETSP1174-20130828|18513_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 509.10
//
Query:       MMETSP1174-20130828|18515_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|18516_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 282.31
//
Query:       MMETSP1174-20130828|18517_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-06   23.4   0.0    6.7e-06   23.4   0.0    1.1  1  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.6e-09   6.7e-06     132     163 ..       3      34 ..       1      66 [. 0.90

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.6e-09
    TIGR01388 132 rtDWlaRPLtdkqleYAaaDVtyLlelyekLs 163
                   +DW aRPL  + ++YAaaD + +++++++L 
  MMETSP1174-20130828|18517_1   3 ASDWEARPLGRERMRYAAADARVVVDMFSTLF 34 
                  69**************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1174-20130828|18518_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 226.86
//
Query:       MMETSP1174-20130828|18519_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   12.0   0.0     0.0083   12.0   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     2e-06    0.0083     128     160 ..      91     123 ..      27     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2e-06
    TIGR00870 128 ftkgitalilAihkqnyeivklLlekgasvear 160
                    +  tal+ A+   n+e+vk L+e gasv+a+
  MMETSP1174-20130828|18519_1  91 LEPKRTALMEAVRYGNIETVKHLVEAGASVNAT 123
                  56778*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 585.15
//
Query:       MMETSP1174-20130828|18521_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|18525_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.76
# Mc/sec: 364.71
//
Query:       MMETSP1174-20130828|18520_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   12.9   3.0     0.0046   12.5   2.0    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.0   1.1e-06    0.0046     329     448 ..      59     178 ..      48     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-06
    TIGR02169 329 eaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleela 448
                  ++ ++k++ e+ el ++i++ k  r+ l + +++  + l      le++ ++ ++ +   ++l++  ++++e ++el+r+++rl e     + + ++    l ++ + i+ l ++++++ 
  MMETSP1174-20130828|18520_1  59 QESLRKQEFELSELTQQIKDLKSGRDTLLKLYESGTADLVSRIDVLESKINKKHAGKVGGDDLEQLHQQVEEDRKELERTRERLNELHDDSRDHFEDTTTSLSDMVDMINGLPATKTDVP 178
                  577889999999999999999999999999999999998888888888888888888899999999999999999999999999999999999999999999999999988888777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.53
# Mc/sec: 1491.73
//
Query:       MMETSP1174-20130828|18526_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 746.25
//
Query:       MMETSP1174-20130828|18530_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-05   20.3   0.0    0.00012   19.9   0.0    1.1  1  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.9e-08   0.00012       1      32 [.       8      39 ..       8      41 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.9e-08
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergiv 32
                 +++n+ is+++  +++ eA +++ + +e g+ 
  MMETSP1174-20130828|18530_1  8 ISFNAAISAYGSCRQYGEAYRVYLQAIEFGLQ 39
                 58***********************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|18531_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|18532_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.1   6.6        1.4    6.8   2.6    2.6  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.062   2.5e+02      12      20 ..      38      46 ..      29      46 .. 0.69
   2 ?    6.8   2.6   0.00033       1.4       5      17 ..      57      68 ..      48      72 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.062
    TIGR01376 12 akgsGGAIy 20
                  ++ GG  y
  MMETSP1174-20130828|18532_1 38 TGEDGGVVY 46
                 566899877 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00033
    TIGR01376  5 ilFsnNsakgsGG 17
                  +Fs+Nsa  +GG
  MMETSP1174-20130828|18532_1 57 CSFSSNSAV-NGG 68
                 69*******.888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.61
# Mc/sec: 162.28
//
Query:       MMETSP1174-20130828|18537_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   10.3   0.0      0.027   10.3   0.0    1.2  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.6e-06     0.027     125     151 ..       6      32 ..       1      58 [. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.6e-06
    TIGR00870 125 tseftkgitalilAihkqnyeivklLl 151
                    +  +g t+l +A++  n+ iv+ L 
  MMETSP1174-20130828|18537_1   6 QATTNEGTTPLYIAAEMGNLDIVQYLA 32 
                  567789*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 227.31
//
Query:       MMETSP1174-20130828|18544_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1174-20130828|18543_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|18546_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|18549_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1174-20130828|18553_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1566.95
//
Query:       MMETSP1174-20130828|18557_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-10   38.1   0.4    1.9e-10   37.8   0.3    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    4.8e-09   33.7   0.3    5.2e-09   33.6   0.2    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    6.3e-07   26.4   1.7    7.8e-07   26.1   1.2    1.3  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    7.7e-07   26.4   0.8    2.3e-06   24.8   0.5    1.7  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
     0.0078   11.7   0.0     0.0088   11.5   0.0    1.0  1  TIGR02712 urea_carbox: urea carboxylase
  ------ inclusion threshold ------
      0.025   11.4   0.0      0.029   11.1   0.0    1.1  1  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
      0.032   11.0   0.0      0.038   10.7   0.0    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.3   3.2e-13   1.9e-10     177     296 ..       2     111 ..       1     112 [] 0.71

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.2e-13
    TIGR01348 177 kvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvd.haaPavrrlare 296
                  k Gd++++  ++ +++sdka++e+ + + Gvv  l+ +vG  v++G+ ++ +++++  ++++  +++ + a++ p   +++ ++ p+        p ++  + d++v+  a+Pavr++a+e
  MMETSP1174-20130828|18557_1   2 KEGDKLQQFDPVCEVQSDKATVEITSRFDGVVLALHHEVGHMVPVGSALIDISTAAEEQTSN--DESIPLATPEPIEIETQGSSVPS--------PHHNV-VLDERVKrLATPAVRKIAKE 111
                  569**********************************************9998877766665..44444444444433333333333........33333.33333332699999999987 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.2   8.8e-12   5.2e-09      23     123 ..       2     111 ..       1     112 [] 0.64

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 8.8e-12
    TIGR01347  23 kvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskee.keekaaakaek........akeaaekkkalspaarklake 123
                  k Gd++++ + ++e+  Dk ++e++s  dGv+ +l+++ g+ v +g +l  ++ ++++++++ e+   + +e+ + +++ +           ++  k+ ++pa+rk+ake
  MMETSP1174-20130828|18557_1   2 KEGDKLQQFDPVCEVQSDKATVEITSRFDGVVLALHHEVGHMVPVGSALIDISTAAEEQTSNDESIPLAtPEPIEIETQGSsvpsphhnVVLDERVKRLATPAVRKIAKE 111
                  679*************************************************9633333222222222202222222222211112211233333446677777777665 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.2   1.3e-09   7.8e-07     151     223 ..       4      76 ..       1     112 [] 0.59

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.3e-09
    TIGR02927 151 GdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpe.kseaks 223
                  Gd+++  +p+ ev +dk   ei s   G++l ++ e  ++v vG+ l  i   a+ e++ ++e  p   +e+  
  MMETSP1174-20130828|18557_1   4 GDKLQQFDPVCEVQSDKATVEITSRFDGVVLALHHEVGHMVPVGSALIDIST-AAEEQTSNDESIPLaTPEPIE 76 
                  7777777777777777777777777777777777777777777777777774.333334444444332222211 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.5     4e-09   2.3e-06      22      90 ..       2      69 ..       1     112 [] 0.72

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4e-09
    TIGR01349 22 keGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknykl 90
                 keGDk+++ d ++e++ DkAt++++s  +g+++ +  + g + vpv++ +  +++  e+ ++  +++ l
  MMETSP1174-20130828|18557_1  2 KEGDKLQQFDPVCEVQSDKATVEITSRFDGVVLALHHEVG-HMVPVGSALIDISTAAEEQTSNDESIPL 69
                 9*****************************9998665555.56***98877666666666544444433 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.5e-05    0.0088    1149    1200 ..       2      53 ..       1      54 [. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
    TIGR02712 1149 evgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                   ++gd++++ d++  v++ k+ +++++  +G+v +++++ G++v  G+al+ +
  MMETSP1174-20130828|18557_1    2 KEGDKLQQFDPVCEVQSDKATVEITSRFDGVVLALHHEVGHMVPVGSALIDI 53  
                   5799*******************************************99865 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     5e-05     0.029     134     168 ..      22      56 ..       6      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5e-05
    TIGR01730 134 kteirAPfdGvigkrlvevgayvsagtelvtiqdl 168
                    ei++ fdGv+ +   evg +v +g++l++i++ 
  MMETSP1174-20130828|18557_1  22 TVEITSRFDGVVLALHHEVGHMVPVGSALIDISTA 56 
                  45788888888888888888888888888888764 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.5e-05     0.038     252     291 ..      21      62 ..       9      73 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.5e-05
    TIGR03794 252 lnteivsqhdGrvlevsltkGdlVeagaslasl..evedats 291
                  +  ei s  dG vl ++ + G +V  g+ l+ +   +e++ts
  MMETSP1174-20130828|18557_1  21 ATVEITSRFDGVVLALHHEVGHMVPVGSALIDIstAAEEQTS 62 
                  4568***************************99654455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|18558_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1174-20130828|18566_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|18562_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 2299.07
//
Query:       MMETSP1174-20130828|18569_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|18568_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1663.76
//
Query:       MMETSP1174-20130828|18574_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|18576_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1174-20130828|18579_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1174-20130828|18578_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 911.15
//
Query:       MMETSP1174-20130828|18581_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|18580_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   14.0   0.1     0.0081   13.2   0.0    1.4  1  TIGR03029 EpsG: chain length determinant protein tyrosine kinase EpsG


Domain annotation for each model (and alignments):
>> TIGR03029  EpsG: chain length determinant protein tyrosine kinase EpsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0     2e-06    0.0081     187     245 ..      45     103 ..       7     125 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2e-06
    TIGR03029 187 GavPPnPqellarpafidlldkvaeeydvvivdtpsaeesadaqivatraagalivvrk 245
                     P  P el++rp + d     + +  +v v+t+ ++ s  a +  + aa +li v +
  MMETSP1174-20130828|18580_1  45 TLGPLAPCELISRPILCDYALFLTHQGMIVTVNTSDTSSSVTAVTADSAAADTLIGVDQ 103
                  445789************************************99999999999985532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 1238.18
//
Query:       MMETSP1174-20130828|18589_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-05   21.1   0.0    3.8e-05   21.0   0.0    1.1  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
     0.0015   15.9   0.0     0.0015   15.8   0.0    1.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-08   3.8e-05      37      76 ..      41      81 ..      22      84 .] 0.80

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.9e-08
    TIGR03848 37 alaerladlpiaaivssPlercretveaiaeargleva.vd 76
                 +  +rl+  p++ +++sPl rc +t++a a  +g++ + vd
  MMETSP1174-20130828|18589_1 41 EHCARLSLAPVQLVIASPLIRCVQTAAAAAVPMGVQSVgVD 81
                 45689*************************99998876566 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.4e-07    0.0015      21      63 ..      21      70 ..      12      84 .] 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.4e-07
    TIGR03162 21 DvpLaekgeeqaaalrekl.......edvkfdavvsSplsRcrelAella 63
                 D+pL+  g++q ++l  ++       + ++++ v++Spl Rc ++A++ a
  MMETSP1174-20130828|18589_1 21 DTPLTPGGWAQGQELGGAInehcarlSLAPVQLVIASPLIRCVQTAAAAA 70
                 66677777777666655444444444899*****************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|18591_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 710.71
//
Query:       MMETSP1174-20130828|18590_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-20   69.8   0.0    3.2e-19   66.2   0.0    1.9  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.2e-17   59.5   0.1    3.2e-14   50.9   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      8e-11   39.6   0.1    1.4e-05   22.6   0.0    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    7.6e-07   25.5   0.1    0.00019   17.6   0.1    2.0  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    0.00035   19.0   0.5      0.037   12.5   0.0    3.0  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0017   14.8   0.0       0.35    7.2   0.0    2.1  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   4.6e-22   3.2e-19     472     644 ..      31     203 ..      25     220 .. 0.94

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 4.6e-22
    TIGR02917 472 gaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladv 644
                  g  + g +d +kA+++f+ AL ++p  ++ + nL +  ++e + d+Ak+ fe++l   p + + l +L ++ +++g  ee+++ + k  + ++++ e+  +L+ ++   g+     ++ + a++++p++++ ++ lg a    ++ ++ v++f+k+++ +p++++    la+ 
  MMETSP1174-20130828|18590_1  31 GREARGTGDDEKAKQYFQWALDLNPTCVTCMKNLGETFMSEHKYDAAKELFERALVHTPRDSDGLYNLGGVLKAQGLVEESISAYRKSLAINSDDWELCYNLGVALGDLGQFLEEAEMYRRALKINPAHAKSWANLGIAVASSGNIAASVPAFQKAVQFEPENGQNWHNLAKS 203
                  55667889********************************************************************************************************9999*************************************************99999975 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00045      0.31      78     106 ..      37      65 ..      28      66 .. 0.68
   2 !   50.9   0.0   4.7e-17   3.2e-14      36     190 ..      63     215 ..      56     229 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00045
    TIGR02521  78 lgelekAeesfrkAltlkpnngdvlNNYG 106
                  +g++ekA+++f+ Al l+p   + + N G
  MMETSP1174-20130828|18590_1  37 TGDDEKAKQYFQWALDLNPTCVTCMKNLG 65 
                  56777777777777777777666666655 PP

  == domain 2    score: 50.9 bits;  conditional E-value: 4.7e-17
    TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAra 190
                  +L+ +++ ++++++Ake  e Al + p d+d    l+ +++ +g  e+   ++rk+l+++ ++ ++  N G+ L   +++ e  +++++A++ +  +  a+s+ N+g+ +++ g+ +    ++++a++ +p++ +   +la+   + g+ ae ++
  MMETSP1174-20130828|18590_1  63 NLGETFMSEHKYDAAKELFERALVHTPRDSDGLYNLGGVLKAQGLVEESISAYRKSLAINSDDWELCYNLGVALGDLGQFLEEAEMYRRALKIN--PAHAKSWANLGIAVASSGNIAASVPAFQKAVQFEPENGQNWHNLAKSLKHLGRSAESES 215
                  7999****************************************************************************999********987..7899*****************************************87666666665555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.1e-08   1.4e-05      32     118 ..      38     124 ..      34     129 .. 0.92
   2 !   17.0   0.0   1.1e-06   0.00078       7     113 ..     115     221 ..     110     228 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.1e-08
    TIGR02552  32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                  g+ e+A++ Fq+   l+pt    +  L+++++  ++y+ A + +++a+  ++ d + +y ++ +l a g  ee+ +a +  ++i  +
  MMETSP1174-20130828|18590_1  38 GDDEKAKQYFQWALDLNPTCVTCMKNLGETFMSEHKYDAAKELFERALVHTPRDSDGLYNLGGVLKAQGLVEESISAYRKSLAINSD 124
                  66689***************************************************************9999999998888777665 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.1e-06
    TIGR02552   7 lksllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                  ++++l +++++ e  Y+l+ +l   g++ e +++++    ++p+ ak w+ L+ ++   ++ +  + a++ a++ ++++ +    +a++l  lg+ +e+++a+ +a 
  MMETSP1174-20130828|18590_1 115 YRKSLAINSDDWELCYNLGVALGDLGQFLEEAEMYRRALKINPAHAKSWANLGIAVASSGNIAASVPAFQKAVQFEPENGQNWHNLAKSLKHLGRSAESESAMLRAS 221
                  6788899999999999999999999**99999999999999**********************************************************99987765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00086      0.59      67     124 ..      38      96 ..      34     106 .. 0.82
   2 !   17.6   0.1   2.8e-07   0.00019     104     212 ..     110     218 ..     102     225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00086
    TIGR03939  67 gedkevidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlll 124
                  g+d+++ ++++ + +l+++    +++l++ + +e+++d A el++++l   P++ d+l 
  MMETSP1174-20130828|18590_1  38 GDDEKAKQYFQWAlDLNPTCVTCMKNLGETFMSEHKYDAAKELFERALVHTPRDSDGLY 96 
                  67777777777777888888888899999999999999999999999999999999875 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2.8e-07
    TIGR03939 104 kAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlak 212
                  ++++ yrk+l  ++ + +l   l  +l d g+  e  +  +++ + +p++a+   +l+ + +++++ +++  a q+a+++eP+n + + +l + l+ lg +a  ++++ 
  MMETSP1174-20130828|18590_1 110 ESISAYRKSLAINSDDWELCYNLGVALGDLGQFLEEAEMYRRALKINPAHAKSWANLGIAVASSGNIAASVPAFQKAVQFEPENGQNWHNLAKSLKHLGRSAESESAML 218
                  79999***************************9888888888888*****99999**********************************************99877765 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   7.7e+02      88     100 ..      36      48 ..      30      62 .. 0.66
   2 !   12.5   0.0   5.3e-05     0.037      45     100 ..      64     116 ..      37     120 .. 0.87
   3 ?    1.4   0.0      0.15     1e+02      44      95 ..     131     179 ..     127     202 .. 0.55
   4 ?    2.7   0.1      0.06        41      45      95 ..     166     213 ..     156     220 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1.1
    TIGR02795  88 elgqkekAkktlq 100
                   +g+ ekAk+++q
  MMETSP1174-20130828|18590_1  36 GTGDDEKAKQYFQ 48 
                  4556666666655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 5.3e-05
    TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                  lGe++++++ky++A++ f+ ++    ++++ +d l++lg +l+++g  e++ + ++
  MMETSP1174-20130828|18590_1  64 LGETFMSEHKYDAAKELFERALV---HTPRDSDGLYNLGGVLKAQGLVEESISAYR 116
                  899***************99998...566788999999999999999888877776 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.15
    TIGR02795  44 wlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekA 95 
                   lG al   +++ + a+ ++ ++k +p ++k+   + +lg +++ +g+ +++
  MMETSP1174-20130828|18590_1 131 NLGVALGDLGQFLEEAEMYRRALKINPAHAKS---WANLGIAVASSGNIAAS 179
                  55666666666666666666666666655553...33344444444444433 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.06
    TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekA 95 
                  lG a+ + ++++++  af+++v+  p++    +++ +l++sl++lg+++++
  MMETSP1174-20130828|18590_1 166 LGIAVASSGNIAASVPAFQKAVQFEPEN---GQNWHNLAKSLKHLGRSAES 213
                  7889999999999*********976665...56666777777777766665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0041       2.8     129     156 ..      60      87 ..      38     106 .. 0.56
   2 !    7.2   0.0   0.00051      0.35     383     462 ..     110     189 ..     101     204 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0041
    TIGR00990 129 klkekGnkayrnkdfdkaielyskalll 156
                   +k++G+ +  + ++d a el+++al+ 
  MMETSP1174-20130828|18590_1  60 CMKNLGETFMSEHKYDAAKELFERALVH 87 
                  3455555555555555555555555543 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00051
    TIGR00990 383 kaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkk 462
                  +    + k+l+ +s+d ++ y  +     +g+f e a  y ++ +++p +  s+  l++     g+ia s   f++a++ 
  MMETSP1174-20130828|18590_1 110 ESISAYRKSLAINSDDWELCYNLGVALGDLGQFLEEAEMYRRALKINPAHAKSWANLGIAVASSGNIAASVPAFQKAVQF 189
                  556678999*************99999999*********************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.62
# Mc/sec: 515.18
//
Query:       MMETSP1174-20130828|18593_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 278.98
//
Query:       MMETSP1174-20130828|18601_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|18599_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|18602_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.21s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1174-20130828|18603_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|18609_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 299.98
//
Query:       MMETSP1174-20130828|18610_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|18613_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043    9.7   1.9      0.056    9.4   1.3    1.0  1  TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2


Domain annotation for each model (and alignments):
>> TIGR00361  ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   1.4e-05     0.056     324     453 ..      12     153 ..       7     159 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 1.4e-05
    TIGR00361 324 flanllavPlytFllvPlilaavlvlslsgslsllqgsWldvsislal...............lrliwnikdvpeftiiiaenwqvllfkff...vllvllllakekRslsllcvaGgillcvtlllfkrpsksswqvdmlDvGqGla 453
                  +++ l  vP  + + +P + ++++v ++ + +  + +  ++   +l l               +  +  +++++   i  a +  vl   ff   +  +++    + ++l   + a  +ll   l+lf   ++ss+ +  ++vG G +
  MMETSP1174-20130828|18613_1  12 VPMSLANVPT-SIVFLPSMAFGMFVAGIVAVIYSVSFHKVNFGPDLQLrtaflpglgagclwtVAAFCAVYSIDF--ISYAACVIVLTSAFFingFCGIVWFQELNGKALQRYVLAASLLLGTALFLF---CESSGLLPYFNVGHGSS 153
                  6777888884.7899999999999999999998888887777777777778899***999888778999999998..999******9999983334679999999*********************99...78889999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 708.57
//
Query:       MMETSP1174-20130828|18616_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 384.32
//
Query:       MMETSP1174-20130828|18618_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 506.67
//
Query:       MMETSP1174-20130828|18619_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|18620_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1174-20130828|18628_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 633.55
//
Query:       MMETSP1174-20130828|18630_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|18633_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 269.98
//
Query:       MMETSP1174-20130828|18631_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    7.5   4.7       0.26    7.1   3.2    1.1  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.2   6.3e-05      0.26     401     456 ..     146     202 ..     130     212 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 6.3e-05
    TIGR02956 401 aakklkleaeerqvkqeLkehkesLeelvaqrTqeLketnerLneEvlnH.akArae 456
                   a++ + ++e ++ k+e++  +++ +  va+r ++L+++n  L++E     + A+  
  MMETSP1174-20130828|18631_1 146 LARRIRDTEELLKLKKEIRTERKQEAANVATRISNLEQMNASLQAELASNrREAKLA 202
                  456677789999**********************************86540445543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 919.67
//
Query:       MMETSP1174-20130828|18639_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 769.94
//
Query:       MMETSP1174-20130828|18640_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 805.59
//
Query:       MMETSP1174-20130828|18643_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.9   0.1      0.033   11.8   0.1    1.1  1  TIGR01440 TIGR01440: TIGR01440 family protein


Domain annotation for each model (and alignments):
>> TIGR01440  TIGR01440: TIGR01440 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     8e-06     0.033     114     150 ..      14      51 ..       7      62 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8e-06
    TIGR01440 114 vvvehikadaGidiGdt.liGmhvkhvavPvrssirei 150
                  vvv+h k   G    +t ++G+hvk v  P+ +si++ 
  MMETSP1174-20130828|18643_1  14 VVVQHAKNAEGHRSANTnVVGLHVKSVVAPLYASINDN 51 
                  67888887778777777368**************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|18647_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1174-20130828|18651_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|18653_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   51.0   0.0    3.3e-14   50.8   0.0    1.1  1  TIGR01068 thioredoxin: thioredoxin
    3.3e-11   41.2   0.0    4.2e-11   40.9   0.0    1.1  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.7e-08   30.1   0.0    8.4e-08   30.0   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.1e-05   22.9   0.0    1.2e-05   22.8   0.0    1.1  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0032   15.4   0.0     0.0046   14.9   0.0    1.2  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.014   12.7   0.0    1.3  1  TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD
      0.024   11.1   0.0      0.027   10.9   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   5.5e-17   3.3e-14       5      62 ..      42     101 ..      38     103 .] 0.83

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.5e-17
    TIGR01068   5 nfeetvassdk.lvlvDfwAeWCgpCkmlaPvleelakeleek.vkvvKlnvdeeqeiaa 62 
                  +fe++v ++++  vlv f A+WCgpC+m+ P+l+e+a++  ++ +k+v++n+de++++a+
  MMETSP1174-20130828|18653_1  42 TFETEVLEAEQpFVLVFFTAPWCGPCRMILPLLDEIARDFPDDgLKIVQVNTDESPSLAS 101
                  6666666655516899999********************976549***********9997 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   7.1e-14   4.2e-11       3      65 ..      40     101 ..      38     103 .] 0.85

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 7.1e-14
    TIGR01126   3 aenfdelvld.enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelas 65 
                  +++f+  vl+ e+  vlv f+aPWCG C+ + P  +++a+++ ++   +ki +v++++  +las
  MMETSP1174-20130828|18653_1  40 EDTFETEVLEaEQPFVLVFFTAPWCGPCRMILPLLDEIARDFPDD--GLKIVQVNTDESPSLAS 101
                  6789888876255689***************************86..59******999887765 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.4e-10   8.4e-08       9      69 ..      41     101 ..      34     103 .] 0.78

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.4e-10
    TIGR01130   9 enfddli..kenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaq 69 
                  ++f++ +   e+++vLv F APWCG C+ + P  ++ A+   +++  +k+++v   e  +la+
  MMETSP1174-20130828|18653_1  41 DTFETEVleAEQPFVLVFFTAPWCGPCRMILPLLDEIARDFPDDG--LKIVQVNTDESPSLAS 101
                  556554422356799999999999999999999999999999999..8888988888888876 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.1e-08   1.2e-05      54     101 ..      42      94 ..      25     103 .] 0.75

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.1e-08
    TIGR00385  54 lltaevlkkgklvLlnvw.asWCptCraehplLkelake....glrivgvdyk 101
                  ++++evl+  ++++l ++ a WC++Cr   plL e+a++    gl+iv v+  
  MMETSP1174-20130828|18653_1  42 TFETEVLEAEQPFVLVFFtAPWCGPCRMILPLLDEIARDfpddGLKIVQVNTD 94 
                  556688888887655554288****************7444449****99964 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.9e-06    0.0046       5      45 ..      58      99 ..      55     103 .] 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.9e-06
    TIGR00411  5 lftsPtCPyCPkakkvveevakeegdk.vevekinvmedlkk 45
                  ft+P C  C +     +e+a++++d  +++ ++n++e +  
  MMETSP1174-20130828|18653_1 58 FFTAPWCGPCRMILPLLDEIARDFPDDgLKIVQVNTDESPSL 99
                 7***********************975389999***998765 PP

>> TIGR02661  MauD: methylamine dehydrogenase accessory protein MauD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.4e-05     0.014      73     102 ..      51      80 ..      26     100 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.4e-05
    TIGR02661  73 lgrptllmftapscpvcdkllpiiksiara 102
                  ++   l++ftap c  c  +lp++  iar 
  MMETSP1174-20130828|18653_1  51 EQPFVLVFFTAPWCGPCRMILPLLDEIARD 80 
                  44557899*******************995 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.7e-05     0.027     368     414 ..      48      94 ..      30     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.7e-05
    TIGR00424 368 leerkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfrad 414
                  le  +   lv + apwc  c+ +    +e+a  +  +g k+ + ++d
  MMETSP1174-20130828|18653_1  48 LEAEQPFVLVFFTAPWCGPCRMILPLLDEIARDFPDDGLKIVQVNTD 94 
                  44444455677789***************************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 388.43
//
Query:       MMETSP1174-20130828|18654_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    9.6   1.1      0.079    9.5   0.8    1.0  1  TIGR00381 cdhD: CO dehydrogenase/acetyl-CoA synthase, delta subunit


Domain annotation for each model (and alignments):
>> TIGR00381  cdhD: CO dehydrogenase/acetyl-CoA synthase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   1.9e-05     0.079     312     339 ..      11      39 ..       2      43 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.9e-05
    TIGR00381 312 GttnaiGareawmkds.ewGpreyrgplw 339
                   +  a+ ar awm ++  w  r+ r   w
  MMETSP1174-20130828|18654_1  11 TAKRAWLARRAWMAKQeAWPVRQQRDGSW 39 
                  34579********9873698899998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 232.92
//
Query:       MMETSP1174-20130828|18655_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 1648.17
//
Query:       MMETSP1174-20130828|18657_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 920.62
//
Query:       MMETSP1174-20130828|18663_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|18664_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|18666_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|18667_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 569.20
//
Query:       MMETSP1174-20130828|18662_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-07   25.9   0.1      2e-06   24.9   0.0    1.4  1  TIGR00976 /NonD: hydrolase CocE/NonD family protein
      2e-06   25.1   0.1    3.4e-06   24.4   0.0    1.2  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
    0.00036   18.0   0.0    0.00062   17.2   0.0    1.3  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2
     0.0022   14.9   0.0      0.004   14.0   0.0    1.3  1  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit


Domain annotation for each model (and alignments):
>> TIGR00976  /NonD: hydrolase CocE/NonD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0     2e-09     2e-06      52     150 ..     483     587 ..     470     607 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2e-09
    TIGR00976  52 qGYavVvqDvRGrgaSeGeldllssdeaeDgydlvdWiakqpwsdGkVamlGvSYdavtqlllaas.......kppaLraiaPleslsdlyqdiafeGalrldell 150
                   G  v   D  G+g+SeGe++ l+++e +D++++vd +       Gk +  G+S  a t ll   +       +  a++a  P +sl++l +d+ ++ a +l++++
  MMETSP1174-20130828|18662_1 483 IGVTVCAMDFTGSGGSEGEYVSLGHHESRDVKAVVDYLQVHR-NVGKLGIWGFSMGAATSLLYSSNmdnrvvhQCSAVVADSPFMSLTALCEDLLSKSASSLNHII 587
                  57778889****************************987655.67*************999876542222222556777888999999999999999998888865 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.3e-09   3.4e-06      51     125 ..     478     553 ..     466     570 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.3e-09
    TIGR03100  51 ralAeaGlpvlRfDyrGmGDsegelstFedie.aDiaAAidafleaapeleeivlwGlCDaAsAvlly.ataderva 125
                    l + G++v   D  G G sege  +  + e  D++A +d +l+ + ++ ++ +wG   +A+ +lly ++ d+rv 
  MMETSP1174-20130828|18662_1 478 HMLLQIGVTVCAMDFTGSGGSEGEYVSLGHHEsRDVKAVVD-YLQVHRNVGKLGIWGFSMGAATSLLYsSNMDNRVV 553
                  567789********************997765269999888.567899********************557777764 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     6e-07   0.00062      41     123 ..     469     551 ..     452     572 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6e-07
    TIGR03101  41 sRrmvalqakalaaeGfgvlqiDlyGtGDSaGdfaeaswdvWkeDvaaalrwlk.ekgaqavtLwglrlgalLalelaaelkek 123
                  +R  v +  + l + G +v ++D  G G S+G+++    +    Dv+a + +l+ ++   ++ +wg  +ga+  l ++ ++ ++
  MMETSP1174-20130828|18662_1 469 CRLAVLRVLHMLLQIGVTVCAMDFTGSGGSEGEYVSLGHHE-SRDVKAVVDYLQvHRNVGKLGIWGFSMGAATSLLYSSNMDNR 551
                  66666777778899*********************988765.679*99999997367899***********9877777666554 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.9e-06     0.004      87     161 ..     477     552 ..     474     575 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-06
    TIGR01836  87 vknLLeeGldvyliDW.gyPdkadryltldDyvngyikkavdkikrtseldkisllGiCqGGtfsliyaaLeedki 161
                  ++ LL+ G+ v  +D+ g  + + +y++l  + ++ +k  vd+++  +++ k+ + G+ +G + sl+y++ +++++
  MMETSP1174-20130828|18662_1 477 LHMLLQIGVTVCAMDFtGSGGSEGEYVSLGHHESRDVKAVVDYLQVHRNVGKLGIWGFSMGAATSLLYSSNMDNRV 552
                  5789***********9456778889********************************************9888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2379.02
//
Query:       MMETSP1174-20130828|18672_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|18674_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.7   3.5      0.026   11.3   2.4    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   6.3e-06     0.026     136     234 ..       2     106 ..       1     111 [. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.3e-06
    TIGR01843 136 srksalraqlesleaqikqleaeleglqaqlqalrqqleliseele.alrkL.....kekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqe 234
                  +r++  r+ l +le+q+k l+ e++++++ l+a+++++++++ +    +  L     +e ++ +r +l +  rer+ ++++la+ +a +++ +a l++leek+++
  MMETSP1174-20130828|18674_1   2 QRNERQRDGLGRLERQLKVLRFERREAERGLAAAEERVTVLAVTEAlWQGRLvgaqeEEAEFFARERLAAVSRERDRAERDLARVQAGMAQRRAWLASLEEKMRG 106
                  57788889999****************************988654414555633333677899************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|18676_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|18673_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-187  622.5   0.0   1.3e-187  622.2   0.0    1.1  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    1.8e-65  219.2   0.0    2.2e-65  218.9   0.0    1.1  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
      2e-42  143.1   0.1    8.2e-29   98.2   0.0    2.2  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    3.5e-40  136.1   0.0    2.2e-39  133.5   0.0    1.9  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
    1.9e-21   74.2   0.0    3.9e-20   69.9   0.0    2.3  1  TIGR00457 asnS: asparagine--tRNA ligase
     0.0038   14.3   0.0       0.46    7.5   0.0    2.2  2  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
     0.0084   13.3   0.0       0.59    7.2   0.0    2.9  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.2   0.0  2.2e-190  1.3e-187       5     494 ..      67     568 ..      63     570 .] 0.95

  Alignments for each domain:
  == domain 1    score: 622.2 bits;  conditional E-value: 2.2e-190
    TIGR00499   5 elqqrlekleelreegeepylnklertkeakelqeeyaklkneeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdkl......sedveeleekl.........ldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkid..ketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpalre 494
                    + rl+k++++r+ g ep++++++ t++a +++ ++ +l++  +e++++ v++aGRi ++R+ gk++F+tlqdesg++qly++k++l       e+ ++    +         +d GDiigv+G++k+t++gelsv ++e ++ltkal plP+kf+G++d  +ryr+R lDlivn+e+r+tf++R+++++ iR+flde++flE+EtP+l ++sgGA A+PF t+hn+ld++l lRiA+El+LKrL+vgG+++vyE+gr++RnEG++t+HnpEFt++E+Yqayadyed++elte++++  +ke lgt+++ y+ ++l+l++p++++ m + + +      + +  dd  + e+a++ a  ++++  ek +++g++ln+ fe+++E++liqPt++ ++P+e+sPLAk +++ p++teRFE F++g+E+ana+sEl+dp+dqrerf+ q+++++agd ea  +Dedf+ ale G+pptgGlGiGiDRl+m+ltd++sirdv++Fp l+ 
  MMETSP1174-20130828|18673_1  67 IRAARLDKVKTIRAAGVEPFAYSYSPTHTALDISRDFGHLEDG-EEDESADVTVAGRILTRRIFGKLAFFTLQDESGTVQLYLDKKRLdaavsgEEGAAS----VkpfasakqwTDAGDIIGVRGTVKRTEKGELSVVANEWTMLTKALLPLPDKFKGFTDVSKRYRQRHLDLIVNPEVRNTFRTRARVTSWIRRFLDEQDFLEMETPTLTAVSGGADARPFETYHNTLDMQLNLRIATELHLKRLVVGGFDRVYELGRIWRNEGISTRHNPEFTSVEIYQAYADYEDMMELTENIVAGAAKEALGTTTVDYQGTTLNLAPPWRRVAMADLVSEELgfDMMALPGDDPASVEEARNRASAAGVKDLEKFTAVGQVLNECFEQLCESKLIQPTLVLHQPKEVSPLAKPHRSLPGVTERFEAFVYGRELANAFSELTDPVDQRERFNVQAEKRAAGDLEACGVDEDFLAALEQGMPPTGGLGIGIDRLIMFLTDASSIRDVIAFPLLKA 568
                  56789************************************99.556799*************************************9766664222222....12334556779***********************************************************************************************************************************************************************************************************************99853334555577899999***************9******************************************************************************************************************************************985 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   0.0   3.8e-68   2.2e-65       2     304 .]     245     563 ..     244     563 .. 0.92

  Alignments for each domain:
  == domain 1    score: 218.9 bits;  conditional E-value: 3.8e-68
    TIGR00462   2 kkrakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmLEwYrvgadleelmeeveellqevle...............deeaeverlsyaeaferylgidplta......sleelkeaaekag.eaaseeedredlldlllvekvepklgkerptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                  ++ra++++ iR+f++e+++lE+etp+l+++++  +  ++++t    +++ + +l L+   E+++KrL++ g  ++++l++++Rne ++++HnpEFt +E Y++ ad+e++me +e++++ +++               +   +++r+ +a+++++ lg+d+++       s ee ++ a++ag +  ++ ++  ++l++++ +  e kl   +pt++++ P++ + La+ +++ ++v eRfE ++ g ElaN+f+ELtd++ qr+Rf+ + ++r+a  le   +de++laale+g+p++ G  +G+DRL+m++++a+si++v+af
  MMETSP1174-20130828|18673_1 245 RTRARVTSWIRRFLDEQDFLEMETPTLTAVSG-GADARPFETY---HNTLDMQLNLRIATELHLKRLVVGGFDRVYELGRIWRNEGISTRHNPEFTSVEIYQAYADYEDMMELTENIVAGAAKealgtttvdyqgttlNLAPPWRRVAMADLVSEELGFDMMALpgddpaSVEEARNRASAAGvKDLEKFTAVGQVLNECFEQLCESKLI--QPTLVLHQPKEVSPLAKPHRSLPGVTERFEAFVYGRELANAFSELTDPVDQRERFNVQAEKRAAGDLEACGVDEDFLAALEQGMPPTGGLGIGIDRLIMFLTDASSIRDVIAF 563
                  689************************98765.4566899998...4567889999999*****************************************************************************99999********************9988875555555555555555566666777888899999999999987..79************************************************************************************************************997 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.4e-31   8.2e-29      15     262 ..     113     367 ..     104     379 .. 0.79
   2 !   42.6   0.1   9.5e-15   5.6e-12     518     555 ..     527     564 ..     518     568 .. 0.95

  Alignments for each domain:
  == domain 1    score: 98.2 bits;  conditional E-value: 1.4e-31
    TIGR00459  15 lgkkvtlaGWverrkdlGeliFidlrDkegivqvvsdkk........kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnkskk.kPleiekkeaeeevrlkyRYLdL.RrpkmqqrlklRskvtkavRnflddkgFleietPiLtk.atPeGardyLvPsRvkkgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkk 262
                     +vt+aG + +r+  G+l F  l+D++g+vq+  dkk        +e  + +k + +    +  g ++  + ++++r  + ge+ v+a+e t+l k+   +P +++   +  + r + R+LdL  +p++ +++++R++vt+ +R+fld+++Fle+etP+Lt  +    ar +     + +     L  +  l+ + L+v+G+d+ y + r++R+e +     Peft +++  ++++ ed+mel+e++v++  ke  +
  MMETSP1174-20130828|18673_1 113 ESADVTVAGRILTRRIFGKLAFFTLQDESGTVQLYLDKKrldaavsgEEGAASVKPFASAKQWTDAGDIIGVR-GTVKR-TEKGELSVVANEWTMLTKALLpLPDKFK-GFTDVSKRYRQRHLDLiVNPEVRNTFRTRARVTSWIRRFLDEQDFLEMETPTLTAvSGGADARPFETYHNTLD-MQLNLRIATELHLKRLVVGGFDRVYELGRIWRNEGISTRHNPEFTSVEIYQAYADYEDMMELTENIVAGAAKEALG 367
                  5678*********************************996432222212233445555444444444443333.34455.7889************976541344555.44444448999****9459**********************************97244566888877666655.5578999************************************************************998887765 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 9.5e-15
    TIGR00459 518 leafeyGaPphaGlalGlDRlvmllaetdsiRdviaFP 555
                  l a+e G Pp +Gl++G+DRl+m+l++  siRdviaFP
  MMETSP1174-20130828|18673_1 527 LAALEQGMPPTGGLGIGIDRLIMFLTDASSIRDVIAFP 564
                  89************************************ PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   3.7e-42   2.2e-39       8     420 ..     110     564 ..     105     568 .. 0.75

  Alignments for each domain:
  == domain 1    score: 133.5 bits;  conditional E-value: 3.7e-42
    TIGR00458   8 eekdgkevllrgwvheirdlGalifvllrdregliqilvkkkk...........vskelfklikk.lkkesvvavkGkvkekekapqgleiipeklevlneakeplPldleekveaeldtrldarfldl.rrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf...ereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk...................elevlevklevpeekl.erltydeaieilrakGk.eikdgedlsteaekllG............ekmdglyfitdfPteikPfytmPdednPeisksfdllyrdleissGaqri.......hdydllvekikakGlePesl.ksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfP 420
                  ee ++ +v++ g++   r  G+l+f +l+d+ g++q  + kk+            s + f ++k+  ++ +++ v+G+vk+ ek  ++l ++ ++  +l++a   lPl  + k  +++  r  +r ldl  +p+v+  f+ r++v   +r fl e++f+e++tP l a +    +  fe ty    + +  l  +  l+ + l++ g++rvye++ i+r e   t rh  e++s++i  a++d +d++++ e++v  + ++    ++                    +l  +e+ +++   +  +    +ea++ ++a+G+ +++++  +        G             k+     ++  P e+ P+ + P+ + P +++ f+ ++ + e++     +         +++  ek  a  le  ++ +++l a++ GmPP  G G+G++rl+m+l+d   ir+++ fP
  MMETSP1174-20130828|18673_1 110 EEDESADVTVAGRILTRRIFGKLAFFTLQDESGTVQLYLDKKRldaavsgeegaASVKPFASAKQwTDAGDIIGVRGTVKRTEK--GELSVVANEWTMLTKA--LLPLPDKFKGFTDVSKRYRQRHLDLiVNPEVRNTFRTRARVTSWIRRFLDEQDFLEMETPTLTAVSGGADARPFE-TYHntlDMQLNLRIATELHLKRLVVGGFDRVYELGRIWRNEGIST-RHNPEFTSVEIYQAYADYEDMMELTENIVAGAAKEALGTTTVdyqgttlnlappwrrvamaDLVSEELGFDMMALPGdDPASVEEARNRASAAGVkDLEKFTAV--------GqvlnecfeqlceSKLIQPTLVLHQPKEVSPL-AKPHRSLPGVTERFEAFVYGRELANAFSELtdpvdqrERFNVQAEKRAAGDLEACGVdEDFLAALEQGMPPTGGLGIGIDRLIMFLTDASSIRDVIAFP 564
                  677899*********************************99986666332222112233555655245789**********998..5788899998888665..566666678899999*********94589********************************97765544455565.4541114566778899***********************998876.9******************************9999888777735555555655555555553333333333333332122345555555555553134443332........144444443333356666778999*******7.789999********9999888887665444111111145777778877888998887368**************************************9 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   6.7e-23   3.9e-20      10     448 ..     108     565 ..     104     569 .. 0.70

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 6.7e-23
    TIGR00457  10 qvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikke.leeel.....eqelkklttgssvsvsgkvve...spkkkqelElkvk..kievvgeaeeedyplqkke...hsleflrelahLrlRtk.tlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEalal.alskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqe....lkfleknvekkkikkl.eeiisskfaritYtdAieiLkesda.....kkkfeledlwGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDl......lvPkiGEiiGGseReddldkLeerlkeegldte.elkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpR 448
                  + ++    +v+v g + t+R  +k+aF +l+D s  +++q  ++k+ l+ ++     ++++k    ++  +  g ++    + k++++ El+v   +  ++++a     pl  k     +++    ++hL l  +  +    + R+ +++ i+++ ++++f++++tP lt+      +  F++        ++  + +  L +++ l+l  l++  +++vy lg  +R E   t RH  Ef+ +E   a+++ ed+++l+e+++    k+ l  ++ +      +l+    + +++ l +e +  + + +  +d  ++ + ++       k++e   + G+ l++  E+ l+e    +P++v + Pke+ +    +   + +++ ++       l+  + E++      +++++  e+  + +l+     + +l     G  p +G G+G++Rl+ +lt+++ ird+i fp 
  MMETSP1174-20130828|18673_1 108 DGEEDESADVTVAGRILTRRIFGKLAFFTLQDES--GTVQLYLDKKrLDAAVsgeegAASVKPFASAKQWTDAGDIIGvrgTVKRTEKGELSVVanEWTMLTKAL---LPLPDKFkgfTDVSKRYRQRHLDLIVNpEVRNTFRTRARVTSWIRRFLDEQDFLEMETPTLTAVSGGADARPFETY-------HNTLDMQLNLRIATELHLKRLVVgGFDRVYELGRIWRNEGIST-RHNPEFTSVEIYQAYADYEDMMELTENIVAGAAKEALGTTTVDyqgtTLNLAPPWRRVAMADLvSEELGFDMMALPGDDPASVEEARNRasaagVKDLEKFTAVGQVLNECFEQ-LCESKLIQPTLVLHQPKEVSPLAKPHRSLPGVTERFEAfvygreLANAFSELTDPVDQRERFNVQAEKRAAGDLEACgVDEDFLAALEQGMPPTGGLGIGIDRLIMFLTDASSIRDVIAFPL 565
                  556677889***********************99..666666665422222111111223333333333333333332212334444445555411555555555...5555444113333444456777765542678899***************************997766666667666.......456888999********98766527*************98776.9*************************************9777733222233333333333332133444466777777766555544432244455566666689999888875.9*******************998777787888877776222333566789999999999999998888888888877333568888899*******************************96 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00078      0.46     182     209 ..     314     341 ..     299     368 .. 0.88
   2 !    4.5   0.0    0.0065       3.8     290     311 ..     539     560 ..     518     565 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00078
    TIGR00468 182 rifsigrvfRrdavdatHlpeFhQvegl 209
                  r+  +gr++R++ +  +H peF+ ve  
  MMETSP1174-20130828|18673_1 314 RVYELGRIWRNEGISTRHNPEFTSVEIY 341
                  77889*******************9975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0065
    TIGR00468 290 afGlgieRlamlkygikdiRdl 311
                  ++G+gi+Rl m   + + iRd 
  MMETSP1174-20130828|18673_1 539 GLGIGIDRLIMFLTDASSIRDV 560
                  68******************86 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.092        54      30      54 ..     249     273 ..     222     279 .. 0.71
   2 !    7.2   0.0     0.001      0.59     106     150 ..     314     358 ..     295     376 .. 0.81
   3 ?    0.7   0.0       0.1        60     204     227 ..     536     559 ..     516     562 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.092
    TIGR02367  30 klerelakalvdrGfvevkspilis 54 
                  ++   + ++l ++ f+e+++p+l +
  MMETSP1174-20130828|18673_1 249 RVTSWIRRFLDEQDFLEMETPTLTA 273
                  45566889*************9876 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.001
    TIGR02367 106 rifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleeli 150
                  r++e+G  +r e   ++h  eft +++ +  +  e   e  e+++
  MMETSP1174-20130828|18673_1 314 RVYELGRIWRNEGISTRHNPEFTSVEIYQAYADYEDMMELTENIV 358
                  89*************************999887777776666665 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.1
    TIGR02367 204 pwvGlGfGlerllkvredtknvrs 227
                  p  GlG G++rl++   d   +r 
  MMETSP1174-20130828|18673_1 536 PTGGLGIGIDRLIMFLTDASSIRD 559
                  6679**********9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1834.97
//
Query:       MMETSP1174-20130828|18682_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 645.80
//
Query:       MMETSP1174-20130828|18680_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1023.81
//
Query:       MMETSP1174-20130828|18678_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-27   93.6   0.0    5.6e-27   93.2   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.1e-24   82.2   0.1    1.2e-23   81.3   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      2e-14   51.5   0.1    3.9e-14   50.5   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    2.2e-06   24.4   0.0    3.1e-06   23.9   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   5.4e-30   5.6e-27       4     113 ..     144     255 ..     141     443 .. 0.74

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 5.4e-30
    TIGR01130   4 leltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge..sssdYnGpReaegivkylkkqsgPask 113
                  + l + +f d+ik+ e+  + FYAPWC  C++L+P +ek Ae + + + +v++akv + e++  ++  +v+ +PtL++f++ge  +  dY   R+ e+++++ k++ +  s+
  MMETSP1174-20130828|18678_1 144 VALDDATFPDFIKNAEFSFIDFYAPWCIWCQRLEPTWEKFAEDVDELGLPVQIAKVNCVEQHATCTSQRVQAFPTLRFFKHGEpvTGADYRSDRTVEALMEFAKRKLELESQ 255
                  78999******************************************************************************88889****************99877664 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.1e-26   1.2e-23       2     104 ..     147     249 ..     146     250 .. 0.94

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.1e-26
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke.pvdyeGeReaeelvefveek 104
                   +++f ++++ + +  +++fyaPWC  C++l+P++ek a+++++    v+iakv++ ++++++++  v++fPtl+ffk+g+     dy  +R+ e+l+ef ++k
  MMETSP1174-20130828|18678_1 147 DDATFPDFIK-NAEFSFIDFYAPWCIWCQRLEPTWEKFAEDVDELGLPVQIAKVNCVEQHATCTSQRVQAFPTLRFFKHGEPVtGADYRSDRTVEALMEFAKRK 249
                  5789999999.899******************************************************************976489**************9875 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.8e-17   3.9e-14       3      82 ..     148     229 ..     146     243 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.8e-17
    TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakelee...kvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                  +++f + +++++    +Df+A+WC  C+ l P+ e++a+++ e    v+++K+n  e++++ ++  +++ Ptl +fk+g+ v+
  MMETSP1174-20130828|18678_1 148 DATFPDFIKNAE-FSFIDFYAPWCIWCQRLEPTWEKFAEDVDElglPVQIAKVNCVEQHATCTSQRVQAFPTLRFFKHGEPVT 229
                  566777777764.899**********************877653337********************************9986 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.1e-09   3.1e-06     376     460 ..     162     246 ..     140     249 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.1e-09
    TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsg..vkvakfradgdqkefakqelqlgsfptillfpkrssra.ikypsekrdvdslmsfv 460
                  ++ +yapwc +cq +e ++ ++ae +   g  v++ak ++  +    + q  ++++fpt+ +f +  + +   y s  r v++lm f 
  MMETSP1174-20130828|18678_1 162 FIDFYAPWCIWCQRLEPTWEKFAEDVDELGlpVQIAKVNCVEQHATCTSQ--RVQAFPTLRFFKHGEPVTgADYRS-DRTVEALMEFA 246
                  5678*********************9877722566666665555555555..5569*****998877655156666.589*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.54
# Mc/sec: 1473.88
//
Query:       MMETSP1174-20130828|18683_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-10   34.9   0.0    7.9e-10   34.8   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
  ------ inclusion threshold ------
      0.012   11.7   0.0      0.013   11.7   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.8e-13   7.9e-10     466     516 ..      20      70 ..      14      72 .] 0.88

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 3.8e-13
    TIGR01967 466 kedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiq 516
                  k++++ ++lt +G +l qlPv Pr++++ll ++ lgc+ +vl ia+als +
  MMETSP1174-20130828|18683_1  20 KDKKSPVQLTALGYHLGQLPVPPRIGKVLLLGAILGCVSPVLTIAAALSQR 70 
                  4455559*****************************************965 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-06     0.013     401     445 ..      26      70 ..      15      72 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.2e-06
    TIGR01970 401 gkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeer 445
                   +lta G +l +L+v+Pr+ ++ll ++  + +   +++aa L +r
  MMETSP1174-20130828|18683_1  26 VQLTALGYHLGQLPVPPRIGKVLLLGAILGCVSPVLTIAAALSQR 70 
                  59**************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|18684_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|18685_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1263.32
//
Query:       MMETSP1174-20130828|18688_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|18695_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|18693_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-17   59.0   0.0    6.1e-17   58.6   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.9e-05   20.7   0.0    0.00021   18.7   0.0    1.9  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0     3e-20   6.1e-17       3     179 ..     112     302 ..     110     310 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 3e-20
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpa........aetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves..........hakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgep.....vtaksDlYaWGLiv 179
                  g++vaik l + a   +   +  r e ++   L+hP +++    G +++ ++F v e+  G  lr+ L ++  L++        a+t +L l +  ++   h++GvvhRDLkP+n+++ ++++ +            k+ DFGi+ L++  ++     lt     +G+P + aPe +  ++     v ++ D+Y++G+++
  MMETSP1174-20130828|18693_1 112 GQEVAIKRLPSIARSSQTSEKFLRQEASMLTSLHHPCVIKFYGIGMSKN-YIFLVTELCTG-SLRHFLEQETFLSTdqstifteAHTLELALDIARGVEFLHSRGVVHRDLKPDNVLLRKKETGQdgsgsdmaslRVKICDFGISRLVSPDGQ----GLTT---AVGTPIFMAPELVSSDTaasteVQTAVDVYSFGILI 302
                  799********98888888888899*********************999.***********.59999999998886222222224678899999999*********************87654331112222222469*********987665....4554...59*********99876512112446789***99764 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     1e-07   0.00021       5     127 ..     100     231 ..      96     255 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1e-07
    TIGR03724   5 GAEaeiylgeflglkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel...............ellkevGelvgklHkagivhgDlttsNiivkddk 127
                  GA a++ +g+++g+++ +K R++   r ++  ek+     r+Ea +l ++++  v   + + + ++   +v e   g  l++ le+++                el+ ++++ v  lH+ g+vh Dl + N+++++++
  MMETSP1174-20130828|18693_1 100 GASAQVFQGTYFGQEVAIK-RLPSIARSSQTSEKF----LRQEASMLTSLHHPCVIKFYGIGMSKNYIFLVTELCTG-SLRHFLEQETFlstdqstifteahtlELALDIARGVEFLHSRGVVHRDLKPDNVLLRKKE 231
                  6777777777777665555.555555555555544....23344444444443333333333333322222222222.23333333222233333344444557999***************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 1390.96
//
Query:       MMETSP1174-20130828|18697_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 564.25
//
Query:       MMETSP1174-20130828|18691_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1021.85
//
Query:       MMETSP1174-20130828|18700_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|18702_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 776.71
//
Query:       MMETSP1174-20130828|18703_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1174-20130828|18705_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 543.19
//
Query:       MMETSP1174-20130828|18707_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-20   68.8   0.0    9.7e-20   68.7   0.0    1.0  1  TIGR02708 L_lactate_ox: L-lactate oxidase
    1.4e-19   67.9   0.2    1.6e-19   67.7   0.1    1.0  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
    9.2e-15   52.2   0.0    9.9e-15   52.1   0.0    1.0  1  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
    9.4e-06   22.9   0.2    2.1e-05   21.8   0.1    1.4  2  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
    1.8e-05   21.6   0.7    3.6e-05   20.6   0.4    1.5  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    3.5e-05   21.3   0.1     0.0027   15.1   0.1    2.0  2  TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
     0.0025   14.9   0.1     0.0025   14.9   0.1    1.2  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
     0.0033   14.3   0.1     0.0035   14.3   0.0    1.1  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
  ------ inclusion threshold ------
      0.025   10.6   0.0      0.029   10.4   0.0    1.0  1  TIGR01342 acon_putative: putative aconitate hydratase


Domain annotation for each model (and alignments):
>> TIGR02708  L_lactate_ox: L-lactate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   2.1e-22   9.7e-20     276     355 ..       2      81 ..       1      92 [. 0.93

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 2.1e-22
    TIGR02708 276 vaeavdkrvpivfdsgvrrgehvfkalasgadlvalgrpvlyglalggsvgarqvleklnkelkrvmqlagtqtiedvka 355
                  v +avd r p+++d gvrrg  ++kala ga  v +g+p+++ la+gg   + ++++ l+ el+  m l+g++t++dv +
  MMETSP1174-20130828|18707_1   2 VVKAVDGRAPVLLDGGVRRGTDILKALALGATAVGIGKPIFFSLAVGGEDWVVNMFKILKTELESAMALCGCETLKDVTS 81 
                  7789*************************************************************************976 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1   3.5e-22   1.6e-19     295     375 ..       2      82 ..       1      90 [. 0.95

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 3.5e-22
    TIGR03966 295 iaeavGdqvevlldGGirrGsdvvkalalGaravliGraylwGlaanGeaGvenvldilrsGideallGlgkasvhelsre 375
                  +++av  +  vlldGG+rrG+d+ kalalGa av iG+  ++ la +Ge  v n+++il++ +++a+   g + +++++++
  MMETSP1174-20130828|18707_1   2 VVKAVDGRAPVLLDGGVRRGTDILKALALGATAVGIGKPIFFSLAVGGEDWVVNMFKILKTELESAMALCGCETLKDVTSN 82 
                  899*************************************************************************99976 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   2.2e-17   9.9e-15     256     332 ..       6      82 ..       1      87 [. 0.92

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2.2e-17
    TIGR02151 256 aakkleliasGGlrsgldvakalaLGAdlvglarplLkaaekegeeavievlekikeelkvamfllgaknieelkkv 332
                  ++ +++++  GG+r g d++kalaLGA++vg+ +p+  +++  ge+ v+++++ +k+el  am l+g++++++++++
  MMETSP1174-20130828|18707_1   6 VDGRAPVLLDGGVRRGTDILKALALGATAVGIGKPIFFSLAVGGEDWVVNMFKILKTELESAMALCGCETLKDVTSN 82 
                  4567899999******************************99*******************************9876 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.6e-08   2.1e-05     255     300 ..      10      55 ..       4      64 .. 0.88
   2 ?   -1.5   0.0      0.54   2.4e+02     341     358 ..      62      79 ..      55      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.6e-08
    TIGR01304 255 vhviadGgietsGdlakaiacGadavvlGsPlaraaeaaGrGffwg 300
                   +v+ dGg++ + d+ ka+a Ga av +G P+  +    G+ +   
  MMETSP1174-20130828|18707_1  10 APVLLDGGVRRGTDILKALALGATAVGIGKPIFFSLAVGGEDWVVN 55 
                  5899****************************99988888887655 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.54
    TIGR01304 341 GalkralaklGykdlkef 358
                    l  a+a +G   lk++
  MMETSP1174-20130828|18707_1  62 TELESAMALCGCETLKDV 79 
                  568889999999999986 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.4   7.9e-08   3.6e-05     328     357 ..      10      39 ..       2      59 .. 0.87
   2 ?   -1.1   0.0       0.3   1.4e+02     423     448 ..      54      79 ..      45      81 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7.9e-08
    TIGR01302 328 ipviADGGirysGdivKalalGadavmlGs 357
                   pv+ DGG+r   di KalalGa+av +G 
  MMETSP1174-20130828|18707_1  10 APVLLDGGVRRGTDILKALALGATAVGIGK 39 
                  68999*********************9996 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.3
    TIGR01302 423 aellaqlvkglksglgdvGaksleel 448
                   ++ + l + l s++  +G+++l+++
  MMETSP1174-20130828|18707_1  54 VNMFKILKTELESAMALCGCETLKDV 79 
                  55666777889999999999999986 PP

>> TIGR01306  GMP_reduct_2: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     6e-06    0.0027     197     228 ..       8      39 ..       2      45 .. 0.88
   2 !    5.0   0.0    0.0071       3.2     115     144 ..      44      73 ..      39      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6e-06
    TIGR01306 197 arkpiiadggirthgdiaksirfgasmvmigs 228
                   r p++ dgg+r   di k++ +ga+ v ig 
  MMETSP1174-20130828|18707_1   8 GRAPVLLDGGVRRGTDILKALALGATAVGIGK 39 
                  689**************************995 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0071
    TIGR01306 115 diahghsnsviemikhiktelpdsfviagn 144
                   +a g  + v++m k +ktel  ++ ++g 
  MMETSP1174-20130828|18707_1  44 SLAVGGEDWVVNMFKILKTELESAMALCGC 73 
                  6789999**************999988875 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.6e-06    0.0025     156     193 ..       2      41 ..       1      81 [. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.6e-06
    TIGR03151 156 vvdavs..iPviaaGGiadgrGlaaalalGaeavqlGtrf 193
                  vv+av+   Pv+  GG+  g  ++ alalGa+av +G   
  MMETSP1174-20130828|18707_1   2 VVKAVDgrAPVLLDGGVRRGTDILKALALGATAVGIGKPI 41 
                  566664337***************************9754 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.7e-06    0.0035     231     272 ..       4      47 ..       1      82 [. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.7e-06
    TIGR01037 231 kkld..iPiiGvGGitsaeDalefllaGasavqvGtavyyegkv 272
                  k +d   P++  GG++   D+l  l  Ga av +G  ++++  v
  MMETSP1174-20130828|18707_1   4 KAVDgrAPVLLDGGVRRGTDILKALALGATAVGIGKPIFFSLAV 47 
                  566666799999**************************997544 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.3e-05     0.029     124     178 ..      29      86 ..      18      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.3e-05
    TIGR01342 124 glgqlaigagg.ldvavamageayylkmpkvvnvrlkgklp..ewvtakdvilellrr 178
                   lg  a+g g  +  + a++ge + ++m k+++ +l+  +      t kdv  +l+ r
  MMETSP1174-20130828|18707_1  29 ALGATAVGIGKpIFFSLAVGGEDWVVNMFKILKTELESAMAlcGCETLKDVTSNLVCR 86 
                  57888888885488999********************987622567999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|18701_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 2345.34
//
Query:       MMETSP1174-20130828|18704_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1267.71
//
Query:       MMETSP1174-20130828|18711_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 543.80
//
Query:       MMETSP1174-20130828|18712_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 323.03
//
Query:       MMETSP1174-20130828|18713_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1502.16
//
Query:       MMETSP1174-20130828|18720_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1816.59
//
Query:       MMETSP1174-20130828|18721_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1085.24
//
Query:       MMETSP1174-20130828|18715_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1498.25
//
Query:       MMETSP1174-20130828|18727_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.0   0.3     0.0013   15.6   0.2    1.1  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
     0.0055   14.7   7.2     0.0076   14.2   5.0    1.2  1  TIGR00880 2_A_01_02: multidrug resistance protein
  ------ inclusion threshold ------
      0.027   11.2   6.1      0.072    9.8   4.2    1.6  1  TIGR00890 2A0111: oxalate/formate antiporter
      0.031   10.9   0.1      0.044   10.4   0.1    1.1  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.3e-06    0.0013      64     190 ..      18     142 ..       9     157 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.3e-06
    TIGR00881  64 aigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrnee 190
                  aig il ++   ++g+++ l  + + l   +l +g+ +p  + +l    ++s+  + +a+  +  n +  + +   l+ +  ++   ++f+++g+ a   +li l+l+  ++++++ + ++elr   
  MMETSP1174-20130828|18727_1  18 AIGSILHGLGVAMVGYMPRLGYIWVCLTCAALGNGICRPAYTYYLSTIANKSHVTQTLALIDVTLNAAMVIGAQ--LTQVFAYYGDSAAFTLAGTAAFFQALITLILYLTEKRQKKTSGDQELRAAI 142
                  4556666666667788889999999999999******************************************6..6677777888999*******************9999999988877776655 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.0   7.4e-06    0.0076      23     136 ..       9     121 ..       3     126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.4e-06
    TIGR00880  23 drvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllf 136
                   r+G  +   +g ++  l+ +++     +  + ++ + +++g +++ +a + +++ i+++  +++ l+l+ + +++++++G+ l+ v a + g +a f +++  a + ++++l+
  MMETSP1174-20130828|18727_1   9 RRFGTLHACAIGSILHGLGVAMVGYMPRLGYIWVCLTCAALGNGICRPAYTYYLSTIANKSHVTQTLALIDVTLNAAMVIGAQLTQVFAYY-GDSAAFTLAGTAAFFQALITLI 121
                  577778888888888888999999999999******************************************************9987666.8889999998888776655544 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.2     7e-05     0.072      62     115 ..       8      64 ..       4     136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7e-05
    TIGR00890  62 adkfGpravallggillgiGfifaaladslallyltyglasvgegi...vYgialst 115
                   ++fG     ++g+il g+G+ +++  + l  +++  + a++g+gi   +Y   lst
  MMETSP1174-20130828|18727_1   8 RRRFGTLHACAIGSILHGLGVAMVGYMPRLGYIWVCLTCAALGNGIcrpAYTYYLST 64 
                  589*******************************************55557777776 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   4.3e-05     0.044      50      98 ..     124     172 ..     116     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.3e-05
    TIGR00959  50 fikkvkekalgqevlkslspkqqlikivkeeLvallgeesaelklaekk 98 
                  +++k ++k+ g++ l++  pk+++ik ++e+Lv +l +++ +l++++ +
  MMETSP1174-20130828|18727_1 124 LTEKRQKKTSGDQELRAAIPKDEFIKEISESLVMILEKRNYDLEQRAAQ 172
                  5677789999*******************************99986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 859.62
//
Query:       MMETSP1174-20130828|18729_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.6   1.7      0.048   10.6   0.5    2.1  2  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   1.2e-05     0.048     221     245 ..      91     119 ..      44     124 .. 0.76
   2 ?    0.4   0.0     0.014        58     267     282 ..     169     184 ..     166     207 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.2e-05
    TIGR03921 221 v...g.espleGtSfAaplVsgvAaLvrs 245
                  v   g + ++ GtS ++p V+g+A L+ +
  MMETSP1174-20130828|18729_1  91 VvigGkTYAVCGTSCSSPAVAGMASLINA 119
                  1444448899****************976 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.014
    TIGR03921 267 argrddsvGaGvvdpv 282
                  ++g+d+  G+G vd  
  MMETSP1174-20130828|18729_1 169 SEGWDPTTGFGSVDYA 184
                  569***********64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|18732_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.9   1.1      0.019   11.6   0.8    1.1  1  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   4.7e-06     0.019     176     277 ..      34     138 ..      10     147 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.7e-06
    TIGR01932 176 ilkkeilqiaesdlkdlGievvDvrikkiklsdelsesiyn...RmrsEreaiArkyRsqGeekaeelrakaekEvvkiLseAereariikgegdaeaAklysda 277
                   ++  +++    +++d+   vv ++++ i+l++++  s  n    ++s+ ++   +   + +++ e+  +++e++  ++ + A++ a+ i +e+   a +l  +a
  MMETSP1174-20130828|18732_1  34 FVAAALQSNVSTAISDVYADVVGFQLNFIDLKPDFRTSRLNaaiQLVSNDKEAYVQEAAIVRAETEVSVLRIENNASRVTASAQAAAQLIEAEATNDATALVEQA 138
                  55556666677789999999*************999875552223444444444455677789999999**************************9999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 673.84
//
Query:       MMETSP1174-20130828|18731_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-270  895.2   6.8   2.7e-270  895.0   4.7    1.0  1  TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47
    2.6e-13   47.7  12.5    2.4e-10   38.0   5.6    3.1  2  TIGR01153 psbC: photosystem II 44 kDa subunit reaction center protein
    2.5e-12   44.7   6.5    2.8e-08   31.4   1.2    3.2  2  TIGR03041 PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein


Domain annotation for each model (and alignments):
>> TIGR03039  PS_II_CP47: photosystem II chlorophyll-binding protein CP47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  895.0   4.7    2e-273  2.7e-270      37     504 .]       1     468 [.       1     468 [. 1.00

  Alignments for each domain:
  == domain 1    score: 895.0 bits;  conditional E-value: 2e-273
    TIGR03039  37 malyelaifdpsdavlnpmwrqgmyvlpfmarlgvteswsgwsitgetavdpgfwsfegvaaahivlsgllllaavwhwvywdlelfrdprtgepaldlpkifgihlllsgllcfgfgafhlsglfgpglwvsdpygltgsvepvapewgadgfnpfnpggivahhiaagivgilaglfhllvrpperlykalrlgnietvlasalaavlfaafvvagtlwygsattpvelfgptryqwdsgyfkkeinrrvqaavakgaskeeaysaipeklafydyvgnspakgglfrtgalvkgdgiatgwlghavfkdkegeelevrrlpnlfenfpvvledkegvvradipfrraeakysfeqtgvtvslyggelngktftdpaqvkkyarkaqlgeifefdretldsdgvfrtsprgwftfahavfallflfghlwhgartlfrdvfagidaeleeqvefgvfkklgdettr 504
                  malyelaifdpsd+vlnpmwrqgmyv+pfm+rlgvt+sw+gwsitge+  +pg+wsfegva++hivlsgl +laa+whwvywdle+frdp ++ep+ldlpkifgihl+l+g+lcfgfgafh++glfgpg+wvsd+yg+tg+v p ap+wg++gfnpfnpgg++ahhiaag +gilag+fh++vrpp+rly+alr+gnietvl+s+++av+faaf+ +gt+wygsattpvelfgptryqwdsgyf++ei+rr+++++++g ++++a+s ip+klafydy+gn+pakgglfr+g++ kgdgia++wlgh+vfkdkeg+el+vrr+p++fe+fpv+l dk+g++radipfrrae+kys+eq gvtv +ygg+lng+tf+d+++vkk+arkaqlge+fefdr +l+sdgvfr+sprgw+tf+h +fallf+fghlwhgartlfrdvf+gi ae+ +qvefg + klgd++tr
  MMETSP1174-20130828|18731_1   1 MALYELAIFDPSDPVLNPMWRQGMYVMPFMTRLGVTDSWGGWSITGESVSNPGLWSFEGVALTHIVLSGLCFLAAIWHWVYWDLEIFRDPFNDEPGLDLPKIFGIHLFLAGILCFGFGAFHVTGLFGPGIWVSDAYGITGKVAPCAPSWGPEGFNPFNPGGVAAHHIAAGTLGILAGIFHVTVRPPKRLYRALRMGNIETVLSSSISAVFFAAFITSGTMWYGSATTPVELFGPTRYQWDSGYFQQEIERRIETSLSEGLTESDAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMDKGDGIAEAWLGHPVFKDKEGRELSVRRMPAFFETFPVILIDKDGIIRADIPFRRAESKYSIEQVGVTVNFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRASLESDGVFRSSPRGWYTFGHLNFALLFFFGHLWHGARTLFRDVFTGIGAEVTDQVEFGAYVKLGDRSTR 468
                  9*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************98 PP

>> TIGR01153  psbC: photosystem II 44 kDa subunit reaction center protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   5.6   1.8e-13   2.4e-10      35     275 ..       1     237 [.       1     248 [. 0.76
   2 !    7.5   0.1   0.00031      0.42     381     416 ..     402     437 ..     380     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 1.8e-13
    TIGR01153  35 mllfevahftfd....kplyeqglillphvatlg....y.gvgtgge.vvd..ifpffvvgvlhlissavlglggiyhslag.peileeassffsldwkdkn..qmtnilgyhlillgvgalllvlkalffggvydtwapgggdvrlvtnptldpavifgyllkspfggegwiisvnslediigghiyvglvlivggifhivtkpfgwarraf.iwsgeaylsyslgalslvgfiasayvwfnntaypsefygptea 275
                  m l+e+a f       +p++ qg+ ++p ++ lg    + g   +ge v +  ++ f  v + h++ s +  l  i+h +    ei       f+  ++d    ++ +i+g+hl l g+ ++   + a ++ g++ +   +  d   +t     p           +g eg+     +   +   hi  g + i+ gifh+  +p     ra+ + + e+ ls s++a+ +++fi+s  +w+ +++ p e++gpt  
  MMETSP1174-20130828|18731_1   1 MALYELAIFDPSdpvlNPMWRQGMYVMPFMTRLGvtdsWgGWSITGEsVSNpgLWSFEGVALTHIVLSGLCFLAAIWHWVYWdLEI-------FRDPFNDEPglDLPKIFGIHLFLAGILCF--GFGAFHVTGLFGPG-IWVSDAYGITGKV-APC-------APSWGPEGFN--PFNPGGVAAHHIAAGTLGILAGIFHVTVRPPKRLYRALrMGNIETVLSSSISAVFFAAFITSGTMWYGSATTPVELFGPTRY 237
                  7789999998762223589**************93333322333455344344899**********************87540444.......444455543115789********988776..56788888988763.4566666665433.332.......3457777763..3345678899**********************99999945689************************************975 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00031
    TIGR01153 381 evnsvnyvslrqwlaasqfvlaffllvghlwhagra 416
                  e + v   s+r w +  ++ +a++++ ghlwh  r+
  MMETSP1174-20130828|18731_1 402 ESDGVFRSSPRGWYTFGHLNFALLFFFGHLWHGART 437
                  5666777899**********************9986 PP

>> TIGR03041  PS_antenn_a_b: chlorophyll a/b binding light-harvesting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   1.2     2e-11   2.8e-08      33     265 ..       1     235 [.       1     261 [. 0.73
   2 !   12.6   0.1   1.1e-05     0.015     286     316 ..     406     438 ..     364     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 2e-11
    TIGR03041  33 stlfelarydps....lpmgeqglillphlaslGi.....Gvdeagvvvdty...pvvviavlhlilsavlgaggllhsllfeedleesevkkakkfkleWddpdkltfilGhhllllGlaaillvekarihGlydpaigavrq..veynldl.aaifnhqldflaidsledvvgGhaflallliaGgafhivtkqlgeakklkgkgllsaeavlsyslagialmaivaaffvavnttvyPvefyGep 265
                  ++l+ela +dps     pm  qg+ ++p +  lG+     G + +g+ v +    ++  +a  h++ls +   ++++h ++ + ++             + +    l  i+G+hl+l G+ ++ + +  ++ Gl+ p i +     ++ ++ + a  ++    f   +    v + h+  + l i  g+fh+++++     + +   + + e+vls s++++ ++a++++  +   +   Pve++G++
  MMETSP1174-20130828|18731_1   1 MALYELAIFDPSdpvlNPMWRQGMYVMPFMTRLGVtdswgGWSITGESVSNPglwSFEGVALTHIVLSGLCFLAAIWHWVYWDLEIFRDPF--------NDEPGLDLPKIFGIHLFLAGILCFGFGAF-HVTGLFGPGIWVSDAygITGKVAPcAPSWGP-EGFNPFN-PGGVAAHHIAAGTLGILAGIFHVTVRPPKRLYRAL--RMGNIETVLSSSISAVFFAAFITSGTMWYGSATTPVELFGPT 235
                  589********9444347999*************93333333344444444311145579********************99877655433........2333446788*************999765.5889999987554441144444441334554.3455554.5789*********************9998877777..68899*****************975555555556******84 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.1e-05
    TIGR03041 286 a..htsrawlanvhfylgffflqGhlwhalral 316
                  +   + r w +  h  ++++f+ Ghlwh  r+l
  MMETSP1174-20130828|18731_1 406 VfrSSPRGWYTFGHLNFALLFFFGHLWHGARTL 438
                  244789**********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1687.32
//
Query:       MMETSP1174-20130828|18736_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|18735_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|18737_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.4   0.0    1.2e-10   39.0   0.0    2.0  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    7.2e-11   39.7   0.0      7e-08   29.8   0.0    2.0  2  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   5.8e-14   1.2e-10     173     214 ..       4      46 ..       1      73 [. 0.92
   2 !    5.0   0.0    0.0013       2.6     244     263 ..     102     121 ..      85     122 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 5.8e-14
    TIGR00446 173 eisklqkeLllaaidalkk.gGvlvYstCsleveeneevvdyl 214
                  +++++q+ Ll  a da+k+ gG lvY+tCs+  eene vv + 
  MMETSP1174-20130828|18737_1   4 NLPTVQRTLLAKAADAVKPkGGRLVYATCSVFAEENEDVVTWF 46 
                  68899*************879********************97 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0013
    TIGR00446 244 alrvyPqsedveGFFvaklr 263
                   +++ P+ + ++GFF+ + +
  MMETSP1174-20130828|18737_1 102 WRKILPHVHGADGFFIGRWK 121
                  58999***********9976 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.4e-11     7e-08     350     396 ..       5      54 ..       2      82 .. 0.79
   2 !    8.3   0.0   0.00011      0.23     417     435 ..     104     122 ..      90     123 .] 0.87

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 3.4e-11
    TIGR00563 350 LvelqkeiLkaiaplvk.kgGtLvYstCtllpeeneeqikaF..laeled 396
                  L  +q+ +L + a+ vk kgG LvY+tC++  eene ++  F  l  + d
  MMETSP1174-20130828|18737_1   5 LPTVQRTLLAKAADAVKpKGGRLVYATCSVFAEENEDVVTWFetLPGHSD 54 
                  6789*************55899******************9966445544 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00011
    TIGR00563 417 qilPhaeegDGFfiaklkk 435
                  +ilPh ++ DGFfi + k+
  MMETSP1174-20130828|18737_1 104 KILPHVHGADGFFIGRWKR 122
                  79************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|18734_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1133.29
//
Query:       MMETSP1174-20130828|18738_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|18733_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-66  221.2   0.0    3.5e-66  220.8   0.0    1.1  1  TIGR03465 HpnD: squalene synthase HpnD
    5.1e-43  145.3   0.0    7.5e-43  144.8   0.0    1.2  1  TIGR03464 HpnC: squalene synthase HpnC
    3.2e-08   31.0   0.0    7.1e-08   29.8   0.0    1.5  2  TIGR01559 squal_synth: farnesyl-diphosphate farnesyltransferase


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.8   0.0   2.5e-69   3.5e-66       6     260 ..     112     377 ..     107     384 .. 0.93

  Alignments for each domain:
  == domain 1    score: 220.8 bits;  conditional E-value: 2.5e-69
    TIGR03465   6 gssfyyamrlLpeekrealtalyAfcrevddivde...eldpevkqakLdwwraeidrlyaGapehpvakaLadaarrfk.lpqedllevidGmemDleq...eryedfaeLklYcdrvAgavGrlsarif....GasdeetrelAehlGlAlqltnilrdvgeDaergRiYLPaeeLqrfgvaaadilearaspalaallaeqaeraralyaealallpaadrraqraalimaaiyralldeieadgfqvlrqrvkltklrklwi 260
                  ++ fy + +l+ e++r+a+ a+y +cr+ dd vd+   +++ +  ++ Ld+w ++++ + +G p+++++ aL d+ r ++ l ++ ++++i+Gm mD  q   +rye++++L lYc+rvA++vG +++ ++    G ++e+++  A +lG+ lq+tnilrdvgeDa rgRiYLP+e+++rfgv++++il++  +++ ++l++++ +rar++ya++++ +p++  ++  ++ + a iy a+ld+ie++++++ r+r  +tk +k   
  MMETSP1174-20130828|18733_1 112 AKTFYLGTQLMGEKERKAVWAIYVWCRRTDDLVDGpraMMNSDGMKEDLDAWEDRLNDVWDGLPKDALDYALLDTRRSYPtLDKQPFQDMIAGMIMDTPQlgkDRYETWEDLYLYCYRVASTVGLMTLPVLgtakGFTEEQAKVPAIALGIGLQMTNILRDVGEDAVRGRIYLPKEDMDRFGVTEQSILNGVCDERYKNLIKFEIQRARDYYAKSYEGIPMLAPKSRLSVQAAADIYGAILDKIEENDYDNFRKRAYVTKPEKFGK 377
                  678*******************************9655677888999********************************64899*************7653327***************************7777788899999999*****************************************************************************************************************999765 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   5.5e-46   7.5e-43       9     259 ..     115     375 ..     109     383 .. 0.89

  Alignments for each domain:
  == domain 1    score: 144.8 bits;  conditional E-value: 5.5e-46
    TIGR03464   9 FpVaslllpkrlrapvaalYafaRtaDDlaDegsa..saeerlalLdalraeLdavaegepaaplleaLaetvrer.slpiepfldLleAfrqDv...svkryatfeelldYCrrSAnPvGrlvLdlagasd....eerlalsdaiCtalQlinflqDvseDlrkdRvYlpaddlerfgvseedlaaaqataavrellafeverarallkegapLvaevdgrlglelalivrggerilekieaagydvlrerpklkkadll 259
                  F  ++ l+ ++ r+ v a+Y ++R  DDl D + a  +++   ++Lda++ +L+ v++g p+ +l  aL +t r++  l+++pf+d+++ + +D     ++ry+t+e+l  YC r A+ vG + L + g+++    e++   + a+  +lQ++n l+Dv+eD  ++R+Ylp++d++rfgv+e+ + ++ ++++ ++l++fe++rar ++ ++ +   +++ + +l ++    +  +il+kie+ +yd +r+r  + k ++ 
  MMETSP1174-20130828|18733_1 115 FYLGTQLMGEKERKAVWAIYVWCRRTDDLVDGPRAmmNSDGMKEDLDAWEDRLNDVWDGLPKDALDYALLDTRRSYpTLDKQPFQDMIAGMIMDTpqlGKDRYETWEDLYLYCYRVASTVGLMTLPVLGTAKgfteEQAKVPAIALGIGLQMTNILRDVGEDAVRGRIYLPKEDMDRFGVTEQSILNGVCDERYKNLIKFEIQRARDYYAKSYEGIPMLAPKSRLSVQAAADIYGAILDKIEENDYDNFRKRAYVTKPEKF 375
                  788899999**********************97651157778899**************999888888887777663899**************7333589************************999987533114445566788899**********************************************************************9999999999999999******************99998775 PP

>> TIGR01559  squal_synth: farnesyl-diphosphate farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.38   5.2e+02       5      47 ..     103     145 ..     100     153 .. 0.73
   2 !   29.8   0.0   5.2e-11   7.1e-08     114     206 ..     201     292 ..     177     311 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.38
    TIGR01559   5 rcyellnlvsrsfavvikeleaelrdavvifylvlraldtved 47 
                  +c ++ ++ +++f +  + + ++ r+av   y+  r  d + d
  MMETSP1174-20130828|18733_1 103 QCQKITQIFAKTFYLGTQLMGEKERKAVWAIYVWCRRTDDLVD 145
                  5777777777888887777778888888888877777666554 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 5.2e-11
    TIGR01559 114 mGnGmadfvlkeekne.etvedydkychyvaGlvGlG.lsrlfvaakledeslaeseelsnslGlflqktniirdyledldenrefWPreiWsky 206
                  m +Gm     +  k+  et ed  +yc+ va  vGl  l  l +a ++ +e  a+  ++   lG+ lq tni+rd  ed   +r + P+e  +++
  MMETSP1174-20130828|18733_1 201 MIAGMIMDTPQLGKDRyETWEDLYLYCYRVASTVGLMtLPVLGTAKGFTEE-QAKVPAI--ALGIGLQMTNILRDVGEDAVRGRIYLPKEDMDRF 292
                  555555443333333359****************96514444444444444.3445555..689999**********************977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1437.21
//
Query:       MMETSP1174-20130828|18740_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-103  344.3   0.0     2e-103  344.1   0.0    1.0  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    3.8e-61  204.6   0.1    3.1e-39  132.5   0.0    2.0  2  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
      1e-56  190.3   0.2    4.1e-39  132.4   0.1    2.0  2  TIGR01328 met_gam_lyase: methionine gamma-lyase
    5.7e-47  158.1   0.2    1.7e-31  107.1   0.1    2.0  2  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    1.2e-41  140.5   0.1    1.6e-25   87.4   0.0    2.0  2  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    2.3e-26   90.2   0.1    1.8e-16   57.7   0.0    2.0  2  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    7.6e-06   23.3   0.2    1.8e-05   22.1   0.1    1.5  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
     0.0052   13.6   0.0     0.0084   12.9   0.0    1.3  1  TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme


Domain annotation for each model (and alignments):
>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.1   0.0    4e-106    2e-103     149     417 ..       2     273 ..       1     274 [. 0.99

  Alignments for each domain:
  == domain 1    score: 344.1 bits;  conditional E-value: 4e-106
    TIGR01326 149 etignPkldvlDiekvaevakkagvplivDntvatpylvrPlehGadivvhsatkylgGhgtaigGvivdsgkfdwkk..ekfpeltePdpsYhGlkftealgnlafivkvrvellrdlGaalsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkkvnypgLasssehelakkylekg.agavlsfevkggkeaakkfidalkLasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                  e+++nP   + D+e++a+ a++ +vp  vDnt+atpyl+rP+e+Gad+vvhs+tk+++G+g+a+gG++vdsgkf+w+   +kfp+l+ePd +YhGl+f+e++g+la+++      lrdlGa+++P+nafl+l G et+ +r++rh+ na +va +L++hp+v++v+ ++L+++++h+la ky++ g  gav++ +++gg+ea+++ +  ++L s+lanvgD++sl++hPastth+qls e++ ++G   d+irls+G+e+++D+iaDl+ al
  MMETSP1174-20130828|18740_1   2 ESLANPGGVISDLEALADCAHAVDVPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVVDSGKFNWSAvkGKFPSLSEPDLGYHGLVFHESFGKLAYTIYGHAVCLRDLGATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAVTSVQMAALEDDPYHALALKYIRGGhGGAVFTIKLAGGYEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHRQLSTEQRDACGAGDDVIRLSIGLESAEDLIADLDYAL 273
                  9***************************************************************************98889*******************************************************************************************************996789******************************************************************************9998 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   4.6e-23   2.4e-20     146     220 ..       2      76 ..       1      87 [. 0.93
   2 !  132.5   0.0     6e-42   3.1e-39     223     380 .]     113     273 ..     103     273 .. 0.95

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 4.6e-23
    TIGR01325 146 etPsnPlaelvdiaalaelahavGaklvvdnvfatPvlqqplklGadvvvysatkaidGqGrvlGGvilgseeli 220
                  e+ +nP   + d++ala+ ahav     vdn++atP l +p++ Gadvvv+s+tk i GqG ++GG+++ s++++
  MMETSP1174-20130828|18740_1   2 ESLANPGGVISDLEALADCAHAVDVPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVVDSGKFN 76 
                  6779****************************************************************9998765 PP

  == domain 2    score: 132.5 bits;  conditional E-value: 6e-42
    TIGR01325 223 vakllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaelakrqqsG..gGtvvafdlkg.reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkral 380
                   a+ lr  G +++p+na++ l+G et+ +r++++  +a ++a  l+++p v  v+ a l d P + la +   G  gG+v +++l+g  ea    +  ++l++  +n+Gd++sli hPa+tthr+ls e+r a g gd ++rls+Gle+ +dl+adl+ al
  MMETSP1174-20130828|18740_1 113 HAVCLRDLGATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAVTSVQMAALEDDPYHALALKYIRGghGGAVFTIKLAGgYEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHRQLSTEQRDACGAGDDVIRLSIGLESAEDLIADLDYAL 273
                  56789*****************************************************************99984459********98999999***************************************************************9887 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.1e-18   5.5e-16     151     219 ..       2      70 ..       1      77 [. 0.94
   2 !  132.4   0.1     8e-42   4.1e-39     231     389 ..     115     274 ..     103     276 .. 0.95

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.1e-18
    TIGR01328 151 etpanptlklidleavvrvakekgvkvivdntfatplltrpvalGvdvvvhsatkyigGhgdvvaGvli 219
                  e+ anp   + dlea++  a++ +v   vdnt atp+l rp++ G+dvvvhs+tk+i+G g  ++G ++
  MMETSP1174-20130828|18740_1   2 ESLANPGGVISDLEALADCAHAVDVPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVV 70 
                  567899999*******************************************************99876 PP

  == domain 2    score: 132.4 bits;  conditional E-value: 8e-42
    TIGR01328 231 vgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaakqmk..kgGgllafelkggeadaakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqale 389
                  v ++dl+ a ++p +afl l G +t+ vrm+r++ na++va +l  hpav  v    le+ + + +a k ++  +gG++++ +l gg++++++ + r++l+     +Gd+ +li hpas th  ++ e+r+a G +++++rls+Gle ++d++adl+ al 
  MMETSP1174-20130828|18740_1 115 VCLRDLG-ATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAVTSVQMAALEDDPYHALALKYIRggHGGAVFTIKLAGGYEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHRQLSTEQRDACGAGDDVIRLSIGLESAEDLIADLDYALA 274
                  5667875.69************************************************************994457899999999************************************************************************9996 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.3e-16   6.6e-14     143     212 ..       2      71 ..       1      81 [. 0.93
   2 !  107.1   0.1   3.4e-34   1.7e-31     228     380 ..     120     274 ..     113     276 .. 0.96

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 1.3e-16
    TIGR02080 143 etPsnPllrvvdiaklcklakaagavvvvdntflsPilqkPlalGadlvlhsatkylnGhsdviaGavia 212
                  e+ +nP   + d+++l++ a+a+++   vdnt+ +P l +P++ Gad+v+hs+tk++ G    ++Gav+ 
  MMETSP1174-20130828|18740_1   2 ESLANPGGVISDLEALADCAHAVDVPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVVD 71 
                  66678888899********************************************************985 PP

  == domain 2    score: 107.1 bits;  conditional E-value: 3.4e-34
    TIGR02080 228 lGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaakqqkG..fGallsfelkGgeeevkkflkklklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqala 380
                  lG+t a+++++l+l G  t+ +r+ ++  na++++++l ++p+v +v  ++l d++ h++a k  +G   Ga+++ +l+Gg e+ ++ +++++l++    +G   sli hpa+ th++++ e r++ G  d ++rls+Gle a+dliadl+ ala
  MMETSP1174-20130828|18740_1 120 LGATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAVTSVQMAALEDDPYHALALKYIRGghGGAVFTIKLAGGYEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHRQLSTEQRDACGAGDDVIRLSIGLESAEDLIADLDYALA 274
                  89*************************************************************99884348*************************999****************************************************9997 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0     3e-17   1.5e-14     140     210 ..       2      70 ..       1      81 [. 0.94
   2 !   87.4   0.0   3.1e-28   1.6e-25     227     380 ..     120     275 ..     107     277 .] 0.94

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 3e-17
    TIGR01329 140 esPtnPlikivdirkiaeaakalnedalvvvdntmlspllcnPlelGadivlesatkylaGhsdvmaGvla 210
                  es +nP   i+d++++a++a+a +  +   vdnt+ +p lc+P+e Gad+v++s+tk+++G    m+G ++
  MMETSP1174-20130828|18740_1   2 ESLANPGGVISDLEALADCAHAVD--VPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVV 70 
                  7889******************99..9*****************************************886 PP

  == domain 2    score: 87.4 bits;  conditional E-value: 3.1e-28
    TIGR01329 227 eGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlksepdfklhksqakG..aGavlsfe.tGsvalskrlveaaklfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaalva 380
                   Ga++aP++++l l G  t+++r+++   na+a+a +l +++ v + v+ a l+++p + l     +G   Gav++++ +G  +  ++ v+   l +     G  +sli  P   +h  + +e r++ +  +d++rls+G+e  edli+dl+ al++
  MMETSP1174-20130828|18740_1 120 LGATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAV-TSVQMAALEDDPYHALALKYIRGghGGAVFTIKlAGGYEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHRQLSTEQRDACGAGDDVIRLSIGLESAEDLIADLDYALAK 275
                  599***************************************66.59***************9999984459****97579*************************************************************************986 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.2e-11   2.7e-08     151     212 ..      11      72 ..       2      88 .. 0.91
   2 !   57.7   0.0   3.5e-19   1.8e-16     225     374 ..     119     273 ..     107     276 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 5.2e-11
    TIGR01324 151 vqdiPaiakaaraagvvvlidntwaagllfkalehgvdisiqaatkylaGhsdvllGtvaan 212
                  + d+ a+a  a+a +v  ++dnt a++ l +++e g d+ ++++tk+++G    + G+v+ +
  MMETSP1174-20130828|18740_1  11 ISDLEALADCAHAVDVPFFVDNTLATPYLCRPMEWGADVVVHSTTKFISGQGSAMGGAVVDS 72 
                  7899*************************************************999999865 PP

  == domain 2    score: 57.7 bits;  conditional E-value: 3.5e-19
    TIGR01324 225 llGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghelfkrdfsGssG..lfsvvlkrlsqkevhafldalklfglgyswGGyeslalnvqpela.irrsikrdleGp...lirlhiGledvddlkadlkaGl 374
                  +lG ++ + +a+ +l G  t+gvr++rh  +a a+a+ l  ++ v+ v   al  dp h+l ++   G  G  +f+++l+++  ++ +a +  ++l++     G   sl+l        +  + +rd  G+   +irl iGle  +dl+adl   l
  MMETSP1174-20130828|18740_1 119 DLGATMAPMNAFLTLNGCETMGVRMDRHCSNARAVASHLAAHPAVTSVQMAALEDDPYHALALKYIRGGHGgaVFTIKLAGG-YEAGQAAVSRVNLLSHLANVGDTRSLILHPASTTHrQLSTEQRDACGAgddVIRLSIGLESAEDLIADLDYAL 273
                  7999************************************************************999987656899999865.5666777899999999999*********876664423334455555533339****************98766 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   3.4e-08   1.8e-05     169     223 ..       6      59 ..       2      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.4e-08
    TIGR01976 169 nllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffg 223
                  n  G+i dl+al++ +ha+   ++vD   ++p+      ++gaD++v s+ kf++
  MMETSP1174-20130828|18740_1   6 NPGGVISDLEALADCAHAVDVPFFVDNTLATPYLC-RPMEWGADVVVHSTTKFIS 59 
                  6679****************************965.5579************986 PP

>> TIGR01437  selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.6e-05    0.0084     168     217 ..      14      64 ..       9      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-05
    TIGR01437 168 veeavkvakehklPlivdaa.aeedlkkyvelGadlviysGakaiegPtsG 217
                  +e ++  a++ ++P+ vd   a   l + +e Gad+v++s +k i+g  s 
  MMETSP1174-20130828|18740_1  14 LEALADCAHAVDVPFFVDNTlATPYLCRPMEWGADVVVHSTTKFISGQGSA 64 
                  6788999**********975388999********************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 937.46
//
Query:       MMETSP1174-20130828|18743_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.8   0.1      0.024   11.7   0.1    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.8e-06     0.024     109     166 ..      53     107 ..      34     123 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.8e-06
    TIGR03366 109 glaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagdlegrrvlvlGaGm 166
                  + a hvv+l+G +++    +l +  +a+++ a a v aa+e +++ +  r+l++ +Gm
  MMETSP1174-20130828|18743_1  53 STAGHVVFLNGGPVIWS-SKLMK--VAATSSAEAEVIAAVESVKTATHFRCLLVELGM 107
                  5688*********9975.55655..56677899***********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 670.50
//
Query:       MMETSP1174-20130828|18742_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-71  236.8   5.4      1e-70  236.6   3.8    1.0  1  TIGR00815 sulP: sulfate permease
  ------ inclusion threshold ------
      0.017   12.9   0.0      0.047   11.5   0.0    1.7  2  TIGR00377 ant_ant_sig: anti-anti-sigma factor


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   3.8   4.9e-74     1e-70     182     563 ..       3     379 ..       1     381 [. 0.91

  Alignments for each domain:
  == domain 1    score: 236.6 bits;  conditional E-value: 4.9e-74
    TIGR00815 182 dlviglvlllfllatkklakr..lkkllfliavaelvvvivatlavsvg.ksskkrgvsilghipsgpevvpekildgellsalapdaiaialvgllesiaiaksfarmkgykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrglvdlkelyklwkvsklDvvvllvtvflvvftsieiGllvgvalSlallllriakpkaklLgrveeaevlesikeypkaltppgvlvyrvdgplyfanaerlkdrllkriedeesareakrdrlkvvildfsavaqlDtsgihalkelrkeleargielllanvakevreklkrseleekigeellfvsvs 563
                   lvig++ l++l   ++l+k+   kk+l ++++ +lvv+i+at+++ +  +++   +v ++g++psg     +  +d +  s+l++ ai i++v ++ +i +ak++a+ ++ +vdanqElv++    i+g+f+++ + +gs+sr+a+ +  +++t++ + vt +v+ +vl++l+++++++pk+vla++i  av +++++ e + lw+vsk++   ++v+++++ ++ + iG++  +alS++++l+  ++p +++Lg +++++ +   k yp+a+++ g++++++d+pl+fa+++ + +++ k +    +++ ++   ++++i+d+ av ++Dts+ + l+ l++e e++g ++  an +      l+  + + k +++++f+s+ 
  MMETSP1174-20130828|18742_1   3 SLVIGVFSLIILRSIQELNKHpkVKKALPIPIPEQLVVLILATMITGFArLNDYPFSVPVVGEVPSG--LYVPAFPDTKNFSKLISPAILISIVTYILTINVAKAVAANNKLNVDANQELVSLAAQSIVGGFTGSCVPSGSFSRTALITTMDAETPMHNAVTCVVIGFVLMFLTEAVYFLPKTVLASVIFLAVKNMMKFGECKALWSVSKAEWTQWMVAFVITTIFGVDIGIYASIALSVLMILKNASFPYTAVLGVLPNTQHYVPLKFYPEAREVDGIKIFQFDAPLTFASKDSFENKIQKMLI---QNMAKEP--IHTIIVDCRAVMTMDTSAGKVLQALMEENEREGRRIYFANWRGLDTVGLRVLK-SLKCDDKKMFLSIP 379
                  578899999999888888876115566667777889*********9999444445667789******..*******************************************************************************************************************************************************************************************************************************************9...5555554..9*********************************9999998776666665555.44455556666665 PP

>> TIGR00377  ant_ant_sig: anti-anti-sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05     0.047      28      80 ..     298     350 ..     288     355 .. 0.87
   2 ?   -3.6   0.0       1.1   2.3e+03      57      79 ..     357     375 ..     356     380 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.3e-05
    TIGR00377  28 pelkelvtklaekkairkivldledlefmdSsGlgvllgalkqvkkrggelvL 80 
                  +++++++ + ++k+ i  i++d++++  md s+  vl  ++++ +++g +++ 
  MMETSP1174-20130828|18742_1 298 NKIQKMLIQNMAKEPIHTIIVDCRAVMTMDTSAGKVLQALMEENEREGRRIYF 350
                  677888888888888999***********************999999988876 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.1
    TIGR00377  57 dSsGlgvllgalkqvkkrggelv 79 
                  d  Gl+vl ++    k+ + +++
  MMETSP1174-20130828|18742_1 357 DTVGLRVLKSL----KCDDKKMF 375
                  66777777544....44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1478.28
//
Query:       MMETSP1174-20130828|18748_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|18749_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1504.68
//
Query:       MMETSP1174-20130828|18753_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|18757_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1174.25
//
Query:       MMETSP1174-20130828|18762_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.69
# Mc/sec: 198.94
//
Query:       MMETSP1174-20130828|18763_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 226.75
//
Query:       MMETSP1174-20130828|18764_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   13.6   0.5      0.012   13.2   0.2    1.3  1  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family


Domain annotation for each model (and alignments):
>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   2.8e-06     0.012      38      90 ..      52     105 ..      29     121 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-06
    TIGR03717  38 vGvaaAvvlRillalvavllLeipll.kliggllLlwiavkllleeeeeeeeee 90 
                    +a+Avv+ i++++++++++  p+  k++ + +Ll ++v +l e  +++ ee+
  MMETSP1174-20130828|18764_1  52 ADLAQAVVVAIVFMTIMMQFIGTPFYfKFLFCGVLLLVCVYMLYEVFQDTAEER 105
                  56789****************999765776666666677777777665555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 412.89
//
Query:       MMETSP1174-20130828|18767_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|18768_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.5   0.2     0.0025   14.5   0.1    1.0  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
  ------ inclusion threshold ------
      0.024   12.1   0.9      0.028   11.9   0.6    1.1  1  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB


Domain annotation for each model (and alignments):
>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.2e-06    0.0025     404     438 ..      22      56 ..       5      58 .] 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-06
    TIGR01173 404 sqlvaPvkvgdgatiaaGstvtkdvpegaLalsra 438
                  ++l   v+vg+++t++ G t+t   p++aL +s a
  MMETSP1174-20130828|18768_1  22 TELGNGVEVGSEVTVGCGVTITVKLPQEALQISSA 56 
                  5677889************************9976 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   1.4e-05     0.028      95     136 ..      14      53 ..       4      56 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
    TIGR04016  95 igngvelganvillgd.itignnvtigagsvvldsipdnalvv 136
                  +gngv  g++   lg+ + +g +vt+g+g  +   +p++al +
  MMETSP1174-20130828|18768_1  14 LGNGVVDGTE---LGNgVEVGSEVTVGCGVTITVKLPQEALQI 53 
                  3444443333...333277888888888888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 218.72
//
Query:       MMETSP1174-20130828|18770_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.36
# Mc/sec: 168.65
//
Query:       MMETSP1174-20130828|18773_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 411.97
//
Query:       MMETSP1174-20130828|18776_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00068   16.4   0.0    0.00073   16.3   0.0    1.0  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-07   0.00073     398     470 ..      13      84 ..       6      86 .] 0.73

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.8e-07
    TIGR03417 398 kceadPeqlydleadPkelenlaeepehaetlealraeaaarwdlealdaevresqarrrvvyealrqGklas 470
                  k+e   ++lydl++dP e  nl  +pe+a+   +l +e ++ ++  + d++ +     r +  +a r+G+++s
  MMETSP1174-20130828|18776_1  13 KSEDAATRLYDLATDPSETINLHGDPEYATRELTLMQEYRSIYHNLTSDTAYKGED-ERAFFEAASRRGNTVS 84 
                  56666789********************9988888888877776555565555554.4555556666677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|18779_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 777.79
//
Query:       MMETSP1174-20130828|18780_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.7   5.3        0.2    9.8   0.1    2.6  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1   0.00067       2.8       5      26 ..      23      44 ..      20      50 .. 0.90
   2 ?   -3.7   0.1      0.85   3.5e+03       3      10 ..      60      67 ..      59      68 .. 0.80
   3 ?    9.8   0.1   4.9e-05       0.2       4      36 ..      74     102 ..      72     115 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00067
    TIGR01557  5 vWteelhrrFlqAvqklGgedk 26
                  W+ e+++  l+ v+klG + +
  MMETSP1174-20130828|18780_1 23 AWSVEEDQQVLELVRKLGAKRW 44
                 6*****************9888 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.85
    TIGR01557  3 rvvWteel 10
                 r++W + l
  MMETSP1174-20130828|18780_1 60 RERWHNHL 67
                 78999987 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 4.9e-05
    TIGR01557   4 vvWteelhrrFlqAvqklGgedkatPkkIlelm 36 
                   +Wte ++r  l+  q+lG   +    +I+++ 
  MMETSP1174-20130828|18780_1  74 APWTEHEDRTILDTHQRLGN-RW---AEIAKVL 102
                  68******************.99...5664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 667.49
//
Query:       MMETSP1174-20130828|18778_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0055   13.2   0.1       0.01   12.3   0.0    1.3  1  TIGR03767 P_acnes_RR: metallophosphoesterase, PPA1498 family


Domain annotation for each model (and alignments):
>> TIGR03767  P_acnes_RR: metallophosphoesterase, PPA1498 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.4e-06      0.01     316     390 ..     146     231 ..     118     239 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-06
    TIGR03767 316 teGslgaeqfkWlkdvlr...dskdtl.lvlfshhtsk..smenvltdpvaPgek......rvlGaelvsllseypnvlaWvnGhth 390
                  +e ++++ q+kW++++++   + +d + + +fsh +     ++ ++ + v  g            +++++l+ ++  + aW  Gh h
  MMETSP1174-20130828|18778_1 146 HEVTIDDDQLKWFEKTVTshpA-EDGWkIFVFSHAPPIgsGLRVLQENHVVNGCCwlnhsgGASTTKFIELVRKHRCIKAWFSGHFH 231
                  5779*************96633.5555256799998651145555556666655455322234447899****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 2150.03
//
Query:       MMETSP1174-20130828|18783_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-22   75.9   6.0    6.9e-22   75.9   4.1    2.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
    8.1e-14   49.6  14.5    6.2e-13   46.7   0.7    2.1  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    7.9e-13   46.0   9.8    6.4e-07   26.5   1.7    2.1  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    2.7e-12   44.0   1.3    2.7e-12   44.0   0.9    2.1  2  TIGR00898 2A0119: cation transport protein
    2.9e-12   44.0   1.4    2.9e-12   44.0   1.0    2.5  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.7e-10   38.2  25.1    3.9e-10   37.1   4.5    2.1  2  TIGR00893 2A0114: D-galactonate transporter
    4.7e-10   36.6  18.5    7.7e-09   32.6   2.3    2.4  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    5.8e-10   36.6   2.3    5.8e-10   36.6   1.6    2.0  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    6.8e-08   29.8  15.0    2.1e-07   28.2   2.0    2.1  2  TIGR00899 2A0120: sugar efflux transporter
    1.8e-07   28.7  15.5      9e-07   26.4  10.7    2.0  1  TIGR00900 2A0121: H+ Antiporter protein
    5.3e-07   26.9  16.6    0.00025   18.1   1.2    3.1  3  TIGR00886 2A0108: nitrite transporter
    3.4e-06   23.1   0.7    6.6e-06   22.1   0.5    1.4  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
  ------ inclusion threshold ------
      0.021   11.6  10.0      0.027   11.2   1.0    2.3  2  TIGR00882 2A0105: oligosaccharide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   4.1   2.2e-24   6.9e-22       5     140 ..      65     199 ..      61     200 .. 0.96
   2 ?   -0.5   0.1      0.83   2.6e+02       8      51 ..     238     277 ..     236     279 .. 0.78
   3 !    7.7   6.1    0.0024      0.76       1     133 [.     285     421 ..     285     428 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 2.2e-24
    TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                  +++++  + + pl+g l+d++Grk+ llv++    l   l+a+++ ++v ++a +l+G++a+++ + + a+iad+ ++++r+ a+gl++a + l++ +Gpl G++la+ +g + +f + ++l +++++ ++++lpe
  MMETSP1174-20130828|18783_1  65 TVKGILAFAACPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMFASTF-TLTFAYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPE 199
                  56899999******************************************************97.5667******************************************************************9 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.83
    TIGR00880   8 AlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssni 51 
                  Al +++  pl+     +v r   l  + +  v+s+l++ l++ +
  MMETSP1174-20130828|18783_1 238 ALQVFIGDPLLA----QVARVTFLYYTGVWAVVSTLMIYLVNRF 277
                  566666667766....8999999999999999999999988765 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0024
    TIGR00880   1 glllagyAlgqlvv.splsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallallafil 133
                  g+lla+y++++++  ++l+  ++  +G +  + +gl+ f++  l++ ++++it++ ++ i+ +++++ + ++ a+l+++ +++   + a g ++ + al   +Gpll ++l+    +     a+++i+a ++ la+ +
  MMETSP1174-20130828|18783_1 285 GYLLAAYGMATMISeGLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTITGIWLS-IFFALFSNLVYPSLASLVSRSVSTVDQGMAQGSINGVKALTEGFGPLLFGILMhlfeDSAMPGAPYIIAAGVVCLAVGV 421
                  789**********769**************************************8876.666899****************************************998888844443333335666655544444444 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.7     2e-15   6.2e-13      53     185 ..      72     202 ..      65     212 .. 0.93
   2 !    7.9   4.5    0.0013       0.4     220     337 ..     260     377 ..     248     422 .. 0.70

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 2e-15
    TIGR00710  53 lavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTka 185
                  +a+   l+G lsD++GRk  lL+ ++   l    +a+++   ++ v+  l +++as    +++a + D+ + ++    y++    l l+  ++pl+Ggy+ + ++ h +Fa+  + +++ +a i ++lpe + 
  MMETSP1174-20130828|18783_1  72 FAACP-LFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMFAST-FTLTFAYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPESNE 202
                  55544.58**********************************************996.5689*********99*********************************************************986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0013
    TIGR00710 220 gglfaflsaapfvlidimgvspevfgllfalniia.lifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavailvgigvslvlsialalaLeefphvaGtas 337
                   g++a +s   + l+++ ++s+  +g+l a  ++a +i+ + l++ +v+ +g+++ +r++lv ++++ +++  ++ +  ++++ ++  ++   +  sl++ +   +   +++ + G+ +
  MMETSP1174-20130828|18783_1 260 TGVWAVVSTLMIYLVNRFHFSKVDIGYLLAAYGMAtMISEGLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTIT-GIWLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAQGSIN 377
                  5677888888888999***********9888777538999**************************999988877777.5666666555544442333333333333344555555555 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.6   1.2e-08   3.8e-06      48     172 ..      76     199 ..      58     220 .. 0.83
   2 !   26.5   1.7     2e-09   6.4e-07      12     168 ..     264     423 ..     254     460 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.2e-08
    TIGR00881  48 fvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaii.vslilllllr 172
                   ++g +sD+ + +  l++ + ++ +   +++f + lwv +++ al+G+f ++   + + +++   ++++r+ + ++      +   + p l    +a  +  h+vf+ + ++ +  +++i+++l +
  MMETSP1174-20130828|18783_1  76 PLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMFASTFTLTFA-YIADMLPPKKRAPAYGLALATLGLSFTIGP-LTGGYLAKEFGDHSVFATSLVLTVAdIAFIVMVLPE 199
                  479**********************************************988666555.9***************99888888888888.899999999999***999887777546666666544 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 2e-09
    TIGR00881  12 knfalalpelqeeiglsktdlGlllsafsiaYgisk.fvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvv....fivpgiiaiivslill 168
                  +  ++++ +l++ + +sk d+G+ll+a  +a  is  ++v ++    ++r ++ +gL++ a+  l++g +++++ +  l ++ +lf  l  p  ++l+ + +s  + G + +  n  + +  ++ p l+ + ++l+ +  +     +i +g++++ v++  +
  MMETSP1174-20130828|18783_1 264 AVVSTLMIYLVNRFHFSKVDIGYLLAAYGMATMISEgLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTITGI-WLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAQGSINGVKALTEGFGPLLFGILMHLFEDSAMPgapyIIAAGVVCLAVGV-TF 423
                  56788999***************************934689******************************99875.6778889******************************************766666666666555477845556667777664.34 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.9   8.7e-15   2.7e-12     141     219 ..      73     150 ..      61     201 .. 0.78
   2 ?   -3.8   3.3       2.7   8.6e+02     324     415 ..     251     344 ..     238     356 .. 0.68

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 8.7e-15
    TIGR00898 141 lGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgil 219
                      ++GqlsD++GRk +Ll+++ +t++  +l+af  +++v++v   L+G++ ++  + ++  i+ +lp k+Ra +  l
  MMETSP1174-20130828|18783_1  73 AACPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMFAST-FTLTFAYIADMLPPKKRAPAYGL 150
                  45678***********************************************999.77889999*********965443 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.7
    TIGR00898 324 klrkttlllmllwfttafsYygLvldleelggni.YldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk.llrta 415
                   +r t+l    +w+ ++ +   Lv + +  +++i Yl +++  +  +   l++ + +  Lg r t+ + l+ +++ +l++   +  +  +l++ 
  MMETSP1174-20130828|18783_1 251 VARVTFLYYTGVWAVVSTLMIYLVNRFHFSKVDIgYLLAAYGMATMISEGLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTITGiWLSIF 344
                  556666666667766666644455544444555537766666666666779999999*************999999999876554432355555 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   1.0   9.3e-15   2.9e-12      71     197 ..      77     202 ..      60     226 .. 0.90
   2 !    6.4   2.2    0.0025      0.79      39     113 ..     269     344 ..     251     348 .. 0.87
   3 ?   -0.7   0.2      0.35   1.1e+02     349     397 ..     346     394 ..     338     429 .. 0.57

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 9.3e-15
    TIGR00895  71 lfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsik 197
                  lfg l+D++gRk  llv++    +  +++a++++++  +v+ +l+g+   +++   +a +++  p + ra + gl  +   +  ++g l ++ l  +fg +s+f+   ++++  ++++++vLpEs +
  MMETSP1174-20130828|18783_1  77 LFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGM-FASTFTLTFAYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPESNE 202
                  79********************************************9.7899999**************99988888777777777777777778******************************87 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0025
    TIGR00895  39 aapalskewgldkvelGfllsa.gLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRf 113
                      l + +  +kv++G+ll+a g++ m+  +ll+ ++   +g +  + ++++ f++  l  + a+++t + +  f
  MMETSP1174-20130828|18783_1 269 LMIYLVNRFHFSKVDIGYLLAAyGMATMISEGLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTITGIWLSIF 344
                  455678899*********986549*******************************************997765555 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.35
    TIGR00895 349 GlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvl 397
                   lf+n  + +l++l +++ +t   + ++g + g+  l   +gp+l g+l
  MMETSP1174-20130828|18783_1 346 ALFSNLVYPSLASLVSRSVSTVDQGMAQGSINGVKALTEGFGPLLFGIL 394
                  4555555555555555555555555555555555555555555555555 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   4.5   1.2e-12   3.9e-10     253     393 ..      60     193 ..      43     197 .. 0.82
   2 !    7.0   7.3    0.0016      0.52     220     371 ..     251     395 ..     238     421 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 1.2e-12
    TIGR00893 253 agllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvva.alaligal 393
                  +g++ ++ +i++f +++l+g lsd l +k      ++ ++ ++g  l ++l+a+  +++ +++++  al+++++  +++++a i+d+l+++  + + Gl  +   l++++gP++ g++a+  G  +  ++ ++  +a i+ +
  MMETSP1174-20130828|18783_1  60 IGIVETVKGILAFAACPLFGQLSDKLGRK------SCLLVTVTGTCLPVCLMAF--TQELWVYAVAQALSGMFASTFTLTFAYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVlTVADIAFI 193
                  89***************************......5666666666677777777..4799**************99***********************999999******************6554443333033333333 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0016
    TIGR00893 220 lalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvg.mvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaia 371
                  +a ++fl+ ++++  ++   +yl++ + +s   +g l +  +++ +++ ++l+ +  +ll ++       + ++++++++ +l+++ +   ++ + +  ++  a f++++   l++++s  +s    g++ G+in + +l   +gP+++g + 
  MMETSP1174-20130828|18783_1 251 VARVTFLYYTGVWAVVSTLMIYLVNRFHFSKVDIGYLLAAYGMATMISeGLLVRWFVPLLGERD-----TIRLGLVGFAAQCLVIGTA---QTITGIWLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAQGSINGVKALTEGFGPLLFGILM 395
                  6667777777778888888889999999998888866555554444443455555555555664.....4555566655555555555...5888888889999999999****************************************986 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   2.3   2.4e-11   7.7e-09      41     184 ..      62     204 ..      26     214 .. 0.85
   2 !    9.4   5.1   0.00026     0.081      20     153 ..     265     398 ..     249     432 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 2.4e-11
    TIGR00711  41 WviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvallilkeekeka 184
                   v T  ++ +    pl g l ++lg++++ lv+v +  l   l + ++ l +  ++ ++ g++++  + l+++ ++   pp+kr+ a +l   ++ ++ ++GP  gG++   +  + +F   +++ ++ +   +++l+e++e+ 
  MMETSP1174-20130828|18783_1  62 IVETVKGILAFAACPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMFASTFT-LTFAYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPESNEPV 204
                  45666677777789***************************************************975.89**************999998888889999******************************99999999987765 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00026
    TIGR00711  20 ivnvalptlaadlgaslsevqWviTsymvanaivI.pltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieay 153
                  +v+  +  l+  +  s   + ++  +y++a  i+  +l+ w   +lger    +++++F+   l+ g a+ +   i   ++ +++  l+ p+  sl+ +      +g+a + +  +  +   +GP L G ++ ++
  MMETSP1174-20130828|18783_1 265 VVSTLMIYLVNRFHFSKVDIGYLLAAYGMATMISEgLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQTITG-IWLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAQGSINGVKALTEGFGPLLFGILMHLF 398
                  7788888999999999999***********999853789********************************986.5566888999***********************999888888889999999999887665 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   1.6   1.8e-12   5.8e-10     265     394 ..      62     185 ..      32     192 .. 0.81
   2 ?   -2.3   2.1       1.2   3.9e+02     248     395 ..     271     411 ..     243     417 .. 0.47

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.8e-12
    TIGR00883 265 lvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiylll 394
                  +v ++ +il++   pl+g lsd++Gr+++l+++ +   l +  +l+a+++  ++++ ++++ +l+ ++a +++++ a +a+++p + R+ + +la +  ++ +  ++p+ +  L++ +gd++ ++  l+l
  MMETSP1174-20130828|18783_1  62 IVETVKGILAFAACPLFGQLSDKLGRKSCLLVTVTGTCLPV--CLMAFTQ--ELWVYAVAQ-ALSGMFASTFTLTFAYIADMLPPKKRAPAYGLALATLGLSFT-IGPLTGGYLAKEFGDHSVFATSLVL 185
                  6778999*********************7666555555555..7888984..444444444.4455556889999*********************99999998.*************997777665554 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.2
    TIGR00883 248 sYlkktaklglsaesallvlllalillllvipl.sgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvsla...ynlasviggglapviaaaLvaltgdkaavgiyllll 395
                   Yl+++  +++s+ ++ ++l++ ++ +++   l + ++   +G r   i l+++ ++  ++++ + +   +i+ +     +l++++a++  ++ + la l + +v ++  ++a    n  +++  g++p++  +L++l++d+a++g  ++++
  MMETSP1174-20130828|18783_1 271 IYLVNR--FHFSKVDIGYLLAAYGMATMISEGLlVRWFVPLLGERD-TIRLGLVGFAAQCLVIGTAQ---TITGI-----WLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAqgsINGVKALTEGFGPLLFGILMHLFEDSAMPGAPYIIA 411
                  455555..33555555555555555555554431345555555555.34444444333322222222...22222.....222333333333333444444444444433333111344456666777777777777777777776655544 PP

>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.0   6.6e-10   2.1e-07      34     181 ..      59     202 ..      29     224 .. 0.83
   2 !    7.4   3.1    0.0014      0.45       5     184 ..     254     433 ..     251     450 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.6e-10
    TIGR00899  34 avGlfytlsaivgiavsqllakasDkqgdrkkLilaclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavmflaaavalvvaavlvtllLPsvak 181
                  ++G++ t++ i++ a+ +l+++ sDk g +  L+++    + l   l a+ ++  v+ v   l   +ast   + fa   +    + r     +++  a + L++ igp+  + La +f+ + +f +  v  v   ++++++LP  + 
  MMETSP1174-20130828|18783_1  59 VIGIVETVKGILAFAACPLFGQLSDKLGRKSCLLVTVT-GTCLPVCLMAFTQELWVYAVAQALSGMFASTF-TLTFAYIADMLPPKKRA--PAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPESNE 202
                  79*************************98777776655.455666677********998888777777775.57888887777777776..5699999***************************88665555556788999998665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
    TIGR00899   5 vafligiagalqlPtLsvfLseevkarpaavGlfytlsaivgiavsqllakas.DkqgdrkkLilaclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavm....flaaavalvvaavlvtllLPsvakeap 184
                  v fl +    + + tL ++L +  + + + +G++++   +++++ + ll +      g+r ++ l  l+  + ++++   + + ++ + l+++ + +++ + P l +L  + +    ++  m  + +    +L+   gp+l ++L   f  ++m    +++aa ++ +a   vt+ +Ps +  a+
  MMETSP1174-20130828|18783_1 254 VTFLYYTGVWAVVSTLMIYLVNRFHFSKVDIGYLLAAYGMATMISEGLLVRWFvPLLGERDTIRL-GLVGFAAQCLVIGTA-QTITGIWLSIFFALFSNLVYPSLASLVSRSVSTVDQG--MAQGSINGVKALTEGFGPLLFGILMHLFEDSAMpgapYIIAAGVVCLAVG-VTFRIPSEEEYAV 433
                  67888888888999********************************9999976155666666554.444444566666665.55788999**********************9998888..99*******************99999998888866667777777666544.5555888766555 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4  10.7   2.8e-09     9e-07      35     304 ..      59     345 ..      53     395 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.8e-09
    TIGR00900  35 vlslaalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallgleiwmvlvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdavgflisallivsvripkkaaseeeelse....................avlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskvlrrssvevgvvlaafglGallGa.lllg....llgkylkraalitiavlviglailvlgllnp.nlllll 304
                  v++++++++ +   ++ p  G l D+l rk  +  +    ++ v+++ f+     e+w+ +v++ + +++++ ft ++ a++ d++p+ + + a +l  ++  l+  +gP  gg l++  g + +++   v  +  +++iv+v ++ +++    +l+                      ++ + l+ l++ + ++lL+ ++ + +l+   + +++s l+ y ++  + +s+v++g +laa+g++ ++   ll+     llg + ++++l  ++  +  l+i++++ + + +l ++ 
  MMETSP1174-20130828|18783_1  59 VIGIVETVKGILAFAACPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQ----ELWVYAVAQALSGMFASTFTLTF-AYIADMLPPKKRAPAYGLALATLGLSFTIGPLTGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPESNEP--VVQLPDprsyfvrksssrpvvdlsslPLAYNPLDALQVFIGDPLLAQVARVTFLYYTGVWAVVSTLMIYLVNR-FHFSKVDIGYLLAAYGMATMISEgLLVRwfvpLLGER-DTIRLGLVGFAAQCLVIGTAQTITGiWLSIFF 345
                  67899*************************998766555555555555555....********************998.9*************************************************************998777776..33345457889999999****999988889999*********************9999999997888777777.******************9875313322333366543.44555555555556666666666653333332 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.2   7.8e-07   0.00025      46     131 ..      67     151 ..      56     157 .. 0.89
   2 ?    3.5   0.0     0.021       6.5     280     315 ..     165     200 ..     157     208 .. 0.88
   3 !   11.4   3.3   8.3e-05     0.026      16     129 ..     262     374 ..     253     443 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7.8e-07
    TIGR00886  46 pvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlgla 131
                    ++++++  ++g l dk+G ++ + +++  +  P+ l+a+ + ++++ ++   l G+  ++F    a i+ + p+k+   A gla
  MMETSP1174-20130828|18783_1  67 KGILAFAACPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQ-ELWVYAVAQALSGMFASTFTLTFAYIADMLPPKKRAPAYGLA 151
                  5555566666799******************************.**********************************99999886 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.021
    TIGR00886 280 lGGllsDklggarkllvlfllvamgaalvvlglvke 315
                  +GG+l+  +g   +++++++l+++ +a +v++l++ 
  MMETSP1174-20130828|18783_1 165 TGGYLAKEFGDHSVFATSLVLTVADIAFIVMVLPES 200
                  69*****************************99854 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 8.3e-05
    TIGR00886  16 vWfalspLvvqiikedlgLskaqlallvavpvlatavl.RiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlg 129
                  vW ++s+L+ +++ + +++sk +++ l a   +at++   +++  +v+ +G R t+ l+l+  a  +l++++a+ +++++ l  +++ ++   + +  +++s+     ++G+A+g
  MMETSP1174-20130828|18783_1 262 VWAVVSTLMIYLV-NRFHFSKVDIGYLLAAYGMATMISeGLLVRWFVPLLGERDTIRLGLVGFAAQCLVIGTAQ-TITGIWLSIFFALFSNLVYPSLASLVSRSVSTVDQGMAQG 374
                  9*********887.***********9999999999886269999******************************.9999999999998888888888888888888888888876 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.5   2.1e-08   6.6e-06     219     303 ..      75     162 ..      51     193 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.1e-08
    TIGR01299 219 aflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekr....gehlswlcmfwmig 303
                  + l+g l+dklgrk +ll++++  ++   l +f q   ++ +++ lsg+    +  + f+y+a++l  +kr    g  l+ l + + ig
  MMETSP1174-20130828|18783_1  75 CPLFGQLSDKLGRKSCLLVTVTGTCLPVCLMAFTQELWVYAVAQALSGMF-ASTFTLTFAYIADMLPPKKRapayGLALATLGLSFTIG 162
                  4589********************************************95.678999**********9999333334455555555555 PP

>> TIGR00882  2A0105: oligosaccharide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   8.4e-05     0.027      11      79 ..      30      99 ..      21     169 .. 0.75
   2 ?    5.1   1.1    0.0063         2      10      53 ..     254     297 ..     248     358 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.4e-05
    TIGR00882 11 fflyffimsayfplfpiwlkdvlg.lsktetGivfsvislfsilfqplfGlisdklGlkkkllwvislll 79
                  f+ f+ +s+  +++p  + d  g      +Giv +v  + + +  plfG +sdklG k  ll +++   
  MMETSP1174-20130828|18783_1 30 LFYEFLAISVTRAVLPRLFVDYFGpYVYHVIGIVETVKGILAFAACPLFGQLSDKLGRKSCLLVTVTGTC 99
                 4555667777777777666666662334558********************************9998643 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0063
    TIGR00882  10 ffflyffimsayfplfpiwlkdvlglsktetGivfsvislfsil 53 
                    fly+  + a+ + + i+l +  ++sk ++G + ++  +++++
  MMETSP1174-20130828|18783_1 254 VTFLYYTGVWAVVSTLMIYLVNRFHFSKVDIGYLLAAYGMATMI 297
                  579***9999999*********************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.50
# Mc/sec: 1227.50
//
Query:       MMETSP1174-20130828|18787_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|18793_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|18791_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1615.87
//
Query:       MMETSP1174-20130828|18797_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|18794_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|18800_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 268.53
//
Query:       MMETSP1174-20130828|18802_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|18810_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.4   5.2      0.023   10.2   3.6    1.0  1  TIGR00845 caca: sodium/calcium exchanger 1


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.6   5.7e-06     0.023     309     362 ..      23      76 ..      12      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.7e-06
    TIGR00845 309 earrelieilkelkqkhPdkdleqleelaeyevlsrqqksrafyriqatrklvG 362
                   +r   ++ ++++++k   k l +     + ++++r++k r +yr+q  r +  
  MMETSP1174-20130828|18810_1  23 RQRAAAARRIQDIHRKRSGKALRRARAAMRLQAVQRGRKNRIWYRVQRRRAMDE 76 
                  3455667899****************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 297.82
//
Query:       MMETSP1174-20130828|18806_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-31  106.1  27.5    2.2e-29  100.4  13.5    2.1  2  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4  13.5   5.3e-33   2.2e-29       1     261 [.      50     325 ..      50     338 .. 0.88
   2 !   10.8   0.7   8.7e-06     0.035     289     375 ..     368     454 ..     358     473 .. 0.76

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 5.3e-33
    TIGR00797   1 PailaniaqpllslvDtafvG....hlgpveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmg...adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk.........akkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesl 261
                  Pa++  i+ pllsl+Dt  vG      g+v Laa+g ++++   +  +++++++att l+a a+++g+ ++++ ++++++  al  g+ v++v++++a++ll +     + ++v  +a +Y+ri++l +p  l+ +alq +l Ga+d+ tpl+++ ++ +in++ d+ l+  + +G+ GaA+Atv+sq+  ++ll+  + +          kk  +++  l  ++ +   r+ +   p++ +vi    ++  ++ +++ + ++ lAahqv+l++  l
  MMETSP1174-20130828|18806_1  50 PALALWITGPLLSLIDTSAVGltagASGAVGLAALGPATTFVDGAQYLFAFISVATTNLLATAIAKGDDEEMKLVIRSGIRCALRCGVGVMAVMLIFAPQLLGIYVgghLASSVVVPAARYVRIRSLCMPTLLVANALQAALLGAKDSVTPLLALSAAALINAFGDVFLVCALKWGLSGAAIATVLSQWGGLVLLVRASTTtlglgrwkgFKKETVTP-ELQAARMKMRSRFYAFCPPVIGMVIGKMSAFGFMTHVASCMPAAQLAAHQVVLSLFFL 325
                  788888999********88763222678*************************************************************************9986557899************************************************************************************99999989965555544444443.223345555556666666899999999999999999999999**********998655 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.7e-06
    TIGR00797 289 akevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawv 375
                  a++ + +    +l +g+++a++  l++ f+a+lftkd  v ++++ l   + ++  + +l    +Gvl   ++ +++      sa++
  MMETSP1174-20130828|18806_1 368 ASKLTNRLQGSSLGVGILVAAVGALVPLFGAGLFTKDVLVAQAMRPLAASLFISASLHSLVCSAEGVLLVRSELGFLSKLYAASAVL 454
                  556666777789******************************************************998665555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1561.87
//
Query:       MMETSP1174-20130828|18812_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|18816_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.55
# Mc/sec: 376.77
//
Query:       MMETSP1174-20130828|18817_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1113.11
//
Query:       MMETSP1174-20130828|18819_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.3   0.1      0.017   12.3   0.0    1.1  1  TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family


Domain annotation for each model (and alignments):
>> TIGR03620  F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.1e-06     0.017      47      80 ..       9      42 ..       2      69 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.1e-06
    TIGR03620 47 lveallaaterlvvatgIvniwvekaaevaesfa 80
                  +ea+l+++ ++vv++gI +++ ek+  va+s +
  MMETSP1174-20130828|18819_1  9 NIEAMLKTAAAIVVGNGISDVQREKPGIVADSSR 42
                 5899**************************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.42
# Mc/sec: 260.84
//
Query:       MMETSP1174-20130828|18821_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 985.52
//
Query:       MMETSP1174-20130828|18824_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    8.5  15.5       0.09    8.2  10.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.7   2.2e-05      0.09     278     416 ..      15     149 ..       5     153 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 2.2e-05
    TIGR02168 278 eleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerr 416
                  + +++ +e +++l++++ e++++ +e+  ++++   l+ ++++l+++  +l++  ++++++ ++  e++ +l+++++s+ +e  e  ++ +++++ +++   ++++++ +v +l+ q ++   e++++  + e+l e+ 
  MMETSP1174-20130828|18824_1  15 KIKQKEAESKQRLENISLELKKIMAEKSDAQDN---LKLNQQALSTETVHLNEFYDRQKDNETKYVEKKLQLQAKIDSMHKECVE-VQQNKNSKEFIDAPSHQITTEAIAVTNLQLQGKNKPLEVSKMCFSHEELHEEG 149
                  556677777777777777777777777766666...4577777788888888888888888888888888999999999999888.67888889999999999999999999999999888888888877777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       477  (0.116285); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 495.76
//
Query:       MMETSP1174-20130828|18831_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 278.64
//
Query:       MMETSP1174-20130828|18837_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1119.63
//
Query:       MMETSP1174-20130828|18839_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 342.35
//
Query:       MMETSP1174-20130828|18846_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 328.51
//
Query:       MMETSP1174-20130828|18843_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1798.35
//
Query:       MMETSP1174-20130828|18851_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|18860_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|18859_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1303.89
//
Query:       MMETSP1174-20130828|18864_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 244.32
//
Query:       MMETSP1174-20130828|18870_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 431.16
//
Query:       MMETSP1174-20130828|18871_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-12   42.9   0.0    7.1e-12   42.7   0.0    1.0  1  TIGR02024 FtcD: glutamate formiminotransferase


Domain annotation for each model (and alignments):
>> TIGR02024  FtcD: glutamate formiminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.7e-15   7.1e-12     160     220 ..      13      73 ..       4      78 .. 0.94

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.7e-15
    TIGR02024 160 PdfGPsevnpkaGatavGarkfliafnvnldtsnleiakkiakavrekggGlklvkaigle 220
                   d GPs  np+ G    Ga  +++ +nv l+t+    a +ia++vr+k+gGl +v+a++l+
  MMETSP1174-20130828|18871_1  13 SDAGPSVTNPQHGIVCCGAVPMVLNYNVRLKTKCQTTAARIARKVRTKNGGLPFVEALALQ 73 
                  699*******************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|18868_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 742.76
//
Query:       MMETSP1174-20130828|18869_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 671.94
//
Query:       MMETSP1174-20130828|18874_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 799.93
//
Query:       MMETSP1174-20130828|18872_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|18873_1  [L=1302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.81
# Mc/sec: 2121.60
//
Query:       MMETSP1174-20130828|18881_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|18882_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 279.69
//
Query:       MMETSP1174-20130828|18884_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|18889_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.41
# Mc/sec: 170.62
//
Query:       MMETSP1174-20130828|18893_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   15.4   0.0     0.0036   15.0   0.0    1.1  1  TIGR02851 spore_V_T: stage V sporulation protein T


Domain annotation for each model (and alignments):
>> TIGR02851  spore_V_T: stage V sporulation protein T
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.7e-07    0.0036       8      71 ..      29      91 ..      26      98 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.7e-07
    TIGR02851  8 riddlGrvvipkeirrtlrireGdpleifvdreGevilkkyspiselsdfakeyaealyqslgh 71
                  iddl  v i k   r+ r r  d l  f+d + e  +  y p  e+  f+ +  e+  +sl +
  MMETSP1174-20130828|18893_1 29 SIDDLNFVKISKTSTRSER-RTEDCLPEFIDSDTECDFAEYFPPREIVSFTDNNDESERESLIK 91
                 69***************99.5669****************************999998888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|18891_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.1   0.0       0.14    8.5   0.0    2.0  2  TIGR03268 methan_mark_3: putative methanogenesis marker protein 3


Domain annotation for each model (and alignments):
>> TIGR03268  methan_mark_3: putative methanogenesis marker protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   3.5e-05      0.14     377     397 ..      92     112 ..      59     122 .. 0.74
   2 ?    1.3   0.0    0.0054        22     147     163 ..     200     216 ..     156     223 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 3.5e-05
    TIGR03268 377 ieieLyedeaPrsveyFRkvt 397
                  ieieL++d+ P+++e FR + 
  MMETSP1174-20130828|18891_1  92 IEIELFNDSVPKTCENFRSLC 112
                  9*****************876 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.0054
    TIGR03268 147 GivakvvgGkkvidrls 163
                   ++++v++G++v+ r++
  MMETSP1174-20130828|18891_1 200 VVFGQVTSGMHVVRRME 216
                  35566666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1066.61
//
Query:       MMETSP1174-20130828|18894_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1174-20130828|18892_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 465.26
//
Query:       MMETSP1174-20130828|18896_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 284.82
//
Query:       MMETSP1174-20130828|18895_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 745.10
//
Query:       MMETSP1174-20130828|18897_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|18898_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 543.04
//
Query:       MMETSP1174-20130828|18900_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|18901_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 153.11
//
Query:       MMETSP1174-20130828|18905_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1174-20130828|18906_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1174-20130828|18904_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1541.75
//
Query:       MMETSP1174-20130828|18911_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1065.02
//
Query:       MMETSP1174-20130828|18909_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-58  195.5   0.0    5.7e-29   99.1   0.0    2.1  2  TIGR02389 RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
    1.9e-25   87.0   0.1    2.7e-25   86.5   0.1    1.1  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
    3.3e-24   82.6   2.0    1.8e-13   47.0   0.1    4.2  4  TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
      3e-17   59.2   0.1    1.1e-07   27.5   0.0    4.0  4  TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit


Domain annotation for each model (and alignments):
>> TIGR02389  RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   5.5e-32   5.7e-29       9     130 ..     246     370 ..     241     384 .. 0.82
   2 !   94.3   0.0   1.5e-30   1.6e-27     189     365 ..     601     790 ..     576     792 .. 0.80

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 5.5e-32
    TIGR02389   9 eleekvkkeevskee...kleeivkrvekeyleslidpgeavGivaaqsiGePgtqmtlrtFhyaGvaelnvtlGLPRlieiv.darktpstPlmtiyledeyekdrekaeevakkieetklekva 130
                   +e+++ k+e+  ++   +  ++ + v++++l+s + pge vG++aaqs+GeP+tqmtl+tFh aG a  nvtlG+PRl e++  a +  +tP+m i l++e ++ + +a+++a+k+e+ +l ++ 
  MMETSP1174-20130828|18909_1 246 RMEDALDKREQAAKDrggDDTQLREIVQAKWLRSQVAPGENVGTIAAQSVGEPSTQMTLNTFHLAGHAGANVTLGIPRLRELLmTASRSLKTPSMVIPLTKERAS-KAAATKLARKLERFTLAQLL 370
                  45555544444333223344556677889****************************************************75389****************887.88999********9999876 PP

  == domain 2    score: 94.3 bits;  conditional E-value: 1.5e-30
    TIGR02389 189 eslkellklkekiknikikGikgikrvv.vrke..kedeyvllteGsnlkevlkleg..........vDktrtttndikeieevlGieaaReaiieeikkvleeqGLdvdiRhlllvaDlmtadGevkqigRhGisgekasvlaRaaFevtvkhLldaavrGevdelkgvveniivgkpirlGtGsvklv 365
                  ++l  + ++++  +n+ ++ + gi+r+  ++ +   +++++l+teG ++  + +le           ++   +++nd+       G+eaaR+ai++e++ v++  G+ vd Rhl l+aD mt+ G+ +++ R Gi +  as++   +Fe   + L  aa++G++d l++    i++g+  r GtG+ +l 
  MMETSP1174-20130828|18909_1 601 NRLLMVDLVEQAAQNTVVRALPGIERAHaIEADlaDGKRWCLQTEGCSFDTINSLESengrsveediLNLYEVSANDVFATLMSYGVEAARAAIVREVRGVFDVYGISVDARHLSLIADTMTFGGSYRAFNRNGIREGSASPFLHMSFETCSNFLTAAAMKGDKDLLHSPSAKIVMGQLPRQGTGAFELF 790
                  44444556677788999999999999852566666677***********988766541112211111223345566666666678****************************************************************************************************99986 PP

>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   2.6e-28   2.7e-25     789     855 ..       2      68 ..       1      76 [. 0.96

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 2.6e-28
    TIGR02390 789 eyffhaagGreglvdtavrtsqsGylqrrlvnalqdlkveedgtvrdtvgvliqlkyGedgvdpaks 855
                  ey+fh++gGreglvdtav+ts+sGylqr lv+ l++l+v++d+tvrd  g+++q+kyG+dg+d++k+
  MMETSP1174-20130828|18909_1   2 EYYFHCMGGREGLVDTAVKTSRSGYLQRCLVKHLEELTVAYDHTVRDGDGNVFQFKYGDDGLDTTKA 68 
                  9***************************************************************997 PP

>> TIGR02386  rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.5e-09   3.6e-06     736     776 ..       2      42 ..       1      63 [. 0.90
   2 !   47.0   0.1   1.7e-16   1.8e-13     874     926 ..     280     330 ..     276     341 .. 0.91
   3 !    4.5   0.0    0.0012       1.2     996    1039 ..     678     721 ..     649     723 .. 0.80
   4 !    4.0   0.0    0.0017       1.7    1101    1142 ..     745     786 ..     734     789 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.5e-09
    TIGR02386 736 eyfisthGarkGladtalktadsGyltrrlvdvaqdvvvke 776
                  ey+    G r Gl+dta+kt+ sGyl r lv   +++ v  
  MMETSP1174-20130828|18909_1   2 EYYFHCMGGREGLVDTAVKTSRSGYLQRCLVKHLEELTVAY 42 
                  8999***************************9999988765 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 1.7e-16
    TIGR02386 874 lveiGeavGviaaqsiGePGtqltmrtfhtGGvasasdditqGlprvkelfea 926
                  +v  Ge vG+iaaqs+GeP tq+t+ tfh+ G a+a  ++t G+pr++el+ +
  MMETSP1174-20130828|18909_1 280 QVAPGENVGTIAAQSVGEPSTQMTLNTFHLAGHAGA--NVTLGIPRLRELLMT 330
                  7888*******************************9..6**********9865 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0012
    TIGR02386  996 pkdllrvkgieavqeylvkevqkvyrlqGveindkhievivrql 1039
                   +   l   g+ea +  +v+ev+ v+ + G++++ +h+ +i   +
  MMETSP1174-20130828|18909_1  678 VFATLMSYGVEAARAAIVREVRGVFDVYGISVDARHLSLIADTM 721 
                   44456778******************************998777 PP

  == domain 4    score: 4.0 bits;  conditional E-value: 0.0017
    TIGR02386 1101 aasfqettkvltdaaikgkkdkllGlkenvilGkliPaGtGl 1142
                     sf   +  lt aa+kg kd l      +++G+l   GtG 
  MMETSP1174-20130828|18909_1  745 HMSFETCSNFLTAAAMKGDKDLLHSPSAKIVMGQLPRQGTGA 786 
                   469999*****************************99***95 PP

>> TIGR02388  rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.1e-08   7.3e-05     170     203 ..       2      35 ..       1      92 [. 0.82
   2 !   27.5   0.0   1.1e-10   1.1e-07     306     342 ..     281     317 ..     276     326 .. 0.90
   3 !    6.5   0.0   0.00024      0.25    1045    1123 ..     644     722 ..     599     725 .. 0.76
   4 !    1.6   0.0    0.0074       7.6    1185    1224 ..     746     785 ..     739     792 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7.1e-08
    TIGR02388 170 eyvissyGarkGlvdtalrtadsGyltrrlvdvs 203
                  ey     G r Glvdta++t+ sGyl r lv   
  MMETSP1174-20130828|18909_1   2 EYYFHCMGGREGLVDTAVKTSRSGYLQRCLVKHL 35 
                  8899999***********************9633 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.1e-10
    TIGR02388 306 vdlGeavGiiaaqsiGepGtqltmrtfhtGGvftgev 342
                  v  Ge vG iaaqs+Gep tq+t+ tfh  G   ++v
  MMETSP1174-20130828|18909_1 281 VAPGENVGTIAAQSVGEPSTQMTLNTFHLAGHAGANV 317
                  6679*************************99887776 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00024
    TIGR02388 1045 sdGqkvdvgealt..dGpvnphdildvffsylkdkdglleaaqeslekvqkflvnevqsvyksqGvdiadkhievivrqmt 1123
                   ++G   d+ ++l   +G +   dil+++    +d        + ++e+++  +v ev+ v+   G+ +  +h+ +i   mt
  MMETSP1174-20130828|18909_1  644 TEGCSFDTINSLEseNGRSVEEDILNLYEVSAND--VFATLMSYGVEAARAAIVREVRGVFDVYGISVDARHLSLIADTMT 722 
                   5666666666663226788888999988655555..66677889********************************99998 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.0074
    TIGR02388 1185 asfqettrvlteaaieGksdwlrGlkenviiGrlipaGtG 1224
                    sf+  +  lt aa++G  d l      +++G+l   GtG
  MMETSP1174-20130828|18909_1  746 MSFETCSNFLTAAAMKGDKDLLHSPSAKIVMGQLPRQGTG 785 
                   58999999***************************9***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.18s 00:00:00.80 Elapsed: 00:00:00.54
# Mc/sec: 1945.62
//
Query:       MMETSP1174-20130828|18915_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|18918_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|18920_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 177.50
//
Query:       MMETSP1174-20130828|18921_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|18922_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.41
# Mc/sec: 238.22
//
Query:       MMETSP1174-20130828|18925_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 271.45
//
Query:       MMETSP1174-20130828|18930_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|18940_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 135.13
//
Query:       MMETSP1174-20130828|18936_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1439.11
//
Query:       MMETSP1174-20130828|18942_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-31  103.6   0.0    1.7e-09   35.1   0.0    4.0  4  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0058   14.2   0.0        3.1    5.4   0.0    2.9  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
  ------ inclusion threshold ------
      0.019   11.0   0.0      0.026   10.5   0.0    1.2  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
      0.025   11.2   0.0        1.8    5.1   0.0    2.8  3  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0022       2.2      20      35 .]       1      16 [.       1      16 [. 0.90
   2 !   35.1   0.0   1.7e-12   1.7e-09       1      35 []      17      51 ..      17      51 .. 0.97
   3 !   27.8   0.0   3.6e-10   3.7e-07       1      35 []      52      86 ..      52      86 .. 0.96
   4 !   29.8   0.0     8e-11   8.2e-08       1      34 [.      87     120 ..      87     121 .. 0.97

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0022
    TIGR00756 20 lelfdeMkergivPda 35
                 l+l+ +M+++g+ P++
  MMETSP1174-20130828|18942_1  1 LKLLGDMERKGVAPNV 16
                 58999*********96 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 1.7e-12
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 ++y++ is++ k +++e+Alel+deM+++g++P++
  MMETSP1174-20130828|18942_1 17 FSYSAAISACEKGNQWEKALELLDEMQDKGVKPNC 51
                 58*******************************97 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 3.6e-10
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++++ is++ k +++e+Al l+d+M++ g+ Pd+
  MMETSP1174-20130828|18942_1 52 YSFSAAISACEKGNQWEKALALLDDMERLGVPPDV 86
                 6899*****************************96 PP

  == domain 4    score: 29.8 bits;  conditional E-value: 8e-11
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  v+y++ is++ + +++ +Al+l+ +M+erg++P+
  MMETSP1174-20130828|18942_1  87 VSYSAAISACKEGRQWQKALQLLADMQERGVKPN 120
                  79*******************************9 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0067       6.9      52      78 ..      16      42 ..       7      47 .. 0.84
   2 !    5.4   0.0     0.003       3.1      57      82 ..      56      81 ..      44      84 .. 0.86
   3 ?    1.2   0.0     0.056        57      55      78 ..      89     112 ..      81     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0067
    TIGR03665 52 vlkarevvkAigrGfspekAlkLlddd 78
                 v+     ++A  +G + ekAl+Lld+ 
  MMETSP1174-20130828|18942_1 16 VFSYSAAISACEKGNQWEKALELLDEM 42
                 56667889****************985 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.003
    TIGR03665 57 evvkAigrGfspekAlkLldddkvLe 82
                   ++A  +G + ekAl Lldd + L 
  MMETSP1174-20130828|18942_1 56 AAISACEKGNQWEKALALLDDMERLG 81
                 6799*****************88776 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.056
    TIGR03665  55 arevvkAigrGfspekAlkLlddd 78 
                      ++A   G + +kAl+Ll d 
  MMETSP1174-20130828|18942_1  89 YSAAISACKEGRQWQKALQLLADM 112
                  5678999999**********9985 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.6e-05     0.026      23     115 ..      19     115 ..       9     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.6e-05
    TIGR03939  23 ydqliiqARaGd.laealslLqklyrktkldkkvldDllavls..Wagedkevidvyeryslvglparel..ealAkAaRnekqwdkAlelyrkllqr 115
                  y ++i +  +G+  ++al+lL+++++k+  +++ ++   a+ +    ++ ++++++ ++++  g+p +++   a+++A+ + +qw+kAl+l  ++++r
  MMETSP1174-20130828|18942_1  19 YSAAISACEKGNqWEKALELLDEMQDKGV-KPNCYSFSAAISAceKGNQWEKALALLDDMERLGVPPDVVsySAAISACKEGRQWQKALQLLADMQER 115
                  67778888888778888888888888887.66665555455441155777899999999999999988751156778999999999999998777766 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.011        11     102     125 ..       1      24 [.       1      33 [. 0.88
   2 ?    5.1   0.0    0.0018       1.8      97     126 ..      31      60 ..      28      73 .. 0.85
   3 ?    0.4   0.0     0.047        49      98     125 ..      67      94 ..      62     106 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.011
    TIGR01179 102 leLleamqkagvkkliFsssaavY 125
                  l+Ll  m++ gv   +Fs saa+ 
  MMETSP1174-20130828|18942_1   1 LKLLGDMERKGVAPNVFSYSAAIS 24 
                  689999***************985 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0018
    TIGR01179  97 nvvntleLleamqkagvkkliFsssaavYg 126
                    + +leLl++mq+ gvk   +s saa+  
  MMETSP1174-20130828|18942_1  31 QWEKALELLDEMQDKGVKPNCYSFSAAISA 60 
                  55689*********************9865 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.047
    TIGR01179  98 vvntleLleamqkagvkkliFsssaavY 125
                   + +l Ll+ m++ gv   + s saa+ 
  MMETSP1174-20130828|18942_1  67 WEKALALLDDMERLGVPPDVVSYSAAIS 94 
                  567899***********99999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 487.96
//
Query:       MMETSP1174-20130828|18947_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.68
# Mc/sec: 306.68
//
Query:       MMETSP1174-20130828|18949_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1659.29
//
Query:       MMETSP1174-20130828|18948_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|18954_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 735.37
//
Query:       MMETSP1174-20130828|18963_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1004.82
//
Query:       MMETSP1174-20130828|18959_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1461.31
//
Query:       MMETSP1174-20130828|18965_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-05   19.6  17.4    3.9e-05   19.4  12.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.11   10.9   2.8       0.11   10.8   0.3    2.2  3  TIGR01707 gspI: general secretion pathway protein I
        1.3    6.6  12.2        3.5    5.3   0.2    2.2  2  TIGR03513 GldL_gliding: gliding motility-associated protein GldL


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  12.1   2.8e-08   3.9e-05     238     464 ..      15     243 ..       1     249 [. 0.34

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.8e-08
    TIGR02168 238 keeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerl...eqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleea 464
                  ++++e+++++l+ a   ++elea+l+e+e++l+e ++ +++l+++ +  ++e ++ ++e  ++e++ e+  + +      ++++ e + q + l++++e ++e+l+ l++ + +l+ +l    a+ ++ +     +++++e  ee l +  s+  +le++l+  + e e + + + +++e+  rlkqe+ +  ++ + + ++++e+++    l+ee ++++eel +l+++
  MMETSP1174-20130828|18965_1  15 ESSMERMNQDLEGAIVYIQELEAKLAEKEQALAEAQAVQHRLDSDSALGTTENNRSTIECPAFETSEERKVSDEvvsTPNRATKVEFQYQGDSLRKTRESYAERLQHLKAGIPNLERDLSTHLASPDR-ATHGIGMKRAEEVNEETLAQIVSDNEALERELDVMKIECEGAAEGKREADEQIGRLKQEVASMIDENDLFVKQMSEIEAGAVALREESQSKDEELMALKQE 243
                  33333333334444444444444444444444444444444444444444444444443333333322222211000111222233333333333333333333333333333333333333333333.22223333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP

>> TIGR01707  gspI: general secretion pathway protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.52   7.1e+02      45      49 ..      47      51 ..       7      96 .. 0.58
   2 ?   10.8   0.3   8.2e-05      0.11      30      80 ..     150     201 ..     143     219 .. 0.74
   3 ?   -0.3   0.0      0.25   3.4e+02      31      61 ..     194     221 ..     188     242 .. 0.61

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.52
    TIGR01707 45 adnrl 49
                 a+ ++
  MMETSP1174-20130828|18965_1 47 AEAQA 51
                 22222 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.2e-05
    TIGR01707  30 naaerlrdktlAllvadnrlaelslevtP.ealgrnsgkeevaGrewlwreq 80 
                  + ae ++++tlA +v dn + e +l+v+  e  g+ +gk e + +    +++
  MMETSP1174-20130828|18965_1 150 KRAEEVNEETLAQIVSDNEALERELDVMKiECEGAAEGKREADEQIGRLKQE 201
                  5678899*******************99625567777777665555455555 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.25
    TIGR01707  31 aaerlrdktlAllvadnrlaelslevtPeal 61 
                  +++rl+++ +A ++ +n l   +++    ++
  MMETSP1174-20130828|18965_1 194 QIGRLKQE-VASMIDENDLFVKQMSEI--EA 221
                  56777765.588888888875555533..33 PP

>> TIGR03513  GldL_gliding: gliding motility-associated protein GldL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2    0.0025       3.5     134     170 ..       3      39 ..       1      53 [. 0.74
   2 ?   -0.5   8.4      0.14   1.9e+02      68     229 ..      80     247 ..      16     250 .] 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0025
    TIGR03513 134 alegaaktlakmtdsyakqkedqeglrldaqkYieql 170
                  +++g+a +l++   s++++++d eg  +  q+   +l
  MMETSP1174-20130828|18965_1   3 SVQGIATALTPSESSMERMNQDLEGAIVYIQELEAKL 39 
                  5789*********************876544444443 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.14
    TIGR03513  68 knkrkkeaaaaeepe.aarllsq.kLdamlkeakvdaellaslgngikneekisdlseaidk..laeatealega....aktlakmtdsyakqkedqeglrldaqkYieqleklaknleaLNeiYeiqlkgaskqikalneiyaglasirdnyddaaedseslkeelekl 229
                   ++rk +++    p+ a+++  q + d+  k  +  ae l+ l +gi n e+  dls  +     a  +  +++a     +tla+++   +  + + + +++++++ +e  +++ ++++ L +     +++    +k ++ei+ag   +r+  +   e+   lk+e+e +
  MMETSP1174-20130828|18965_1  80 SEERKVSDEVVSTPNrATKVEFQyQGDSLRKTRESYAERLQHLKAGIPNLER--DLSTHLASpdRATHGIGMKRAeevnEETLAQIVSDNEALERELDVMKIECEGAAEGKREADEQIGRLKQEVASMIDENDLFVKQMSEIEAGAVALREESQSKDEELMALKQENEMM 247
                  4455555544444330333444414456667777889999999999999554..5665544400344444455541112467888887778888888889*********************99999999999999*****************999999999*****9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 824.93
//
Query:       MMETSP1174-20130828|18964_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|18966_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 601.87
//
Query:       MMETSP1174-20130828|18967_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|18968_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       428  (0.104339); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|18970_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 695.48
//
Query:       MMETSP1174-20130828|18973_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|18975_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 210.20
//
Query:       MMETSP1174-20130828|18977_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-17   60.4   0.0    2.9e-17   60.3   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    3.7e-17   59.1   0.0    4.1e-17   58.9   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.2e-06   24.3   0.0    4.6e-06   24.2   0.0    1.0  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.1e-06   22.9   0.0    6.9e-06   22.7   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.9e-05   21.0   0.0    3.9e-05   21.0   0.0    1.1  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    0.00012   19.3   0.0    0.00012   19.3   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    0.00018   18.7   0.0    0.00018   18.7   0.0    1.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    0.00019   18.3   0.1     0.0002   18.3   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    0.00019   17.6   0.1    0.00022   17.5   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    0.00022   18.8   0.1    0.00022   18.8   0.0    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    0.00037   18.1   0.0    0.00038   18.1   0.0    1.1  1  TIGR00960 3a0501s02: type II secretory pathway family protein
     0.0025   14.2   0.0     0.0026   14.1   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
     0.0033   13.9   0.3     0.0037   13.8   0.2    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
     0.0046   14.3   0.0     0.0046   14.3   0.0    1.1  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
     0.0073   13.6   0.1      0.009   13.3   0.0    1.1  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
       0.01   13.1   0.0       0.01   13.0   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
  ------ inclusion threshold ------
      0.013   12.9   0.0      0.013   12.8   0.0    1.0  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      0.016   12.5   0.1      0.025   11.9   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      0.028   11.3   0.0       0.03   11.2   0.0    1.0  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.3e-19   2.9e-17     191     253 ..       2      66 ..       1      67 [] 0.91

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.3e-19
    TIGR00955 191 DEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeG.rvvylGspee 253
                  DEPTsGLD++++ +++++++ la  +g+tv+ tiHQP se+  lf++++l+++G + ++ G+  +
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALlHGTTVVATIHQPRSEILGLFENLLLMSKGgHQAFFGKSAR 66 
                  ***********************648*************************98637899998765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.9e-19   4.1e-17     927     987 ..       2      63 ..       1      66 [. 0.96

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.9e-19
    TIGR00956 927 DePtsGLDsqtawsivkllrkla.daGqailCtiHqPsailleeFDrLLllqkGGktvYfGd 987
                  DePtsGLD+ t+ ++++ ++ la  +G +++ tiHqP   +l  F++LLl+ kGG+ ++fG+
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLAlLHGTTVVATIHQPRSEILGLFENLLLMSKGGHQAFFGK 63 
                  9*********************9459**********************************96 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.1e-08   4.6e-06     166     217 ..       2      55 ..       1      58 [. 0.94

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.1e-08
    TIGR02982 166 dePtaaldkksgrevvellqklareqgttillvthdnr..ildvadrivkmedG 217
                  dePt+ ld++++ +++  +q+la  +gtt++   h +r  il + + ++ m +G
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATIHQPRseILGLFENLLLMSKG 55 
                  9***********************************987799999999999988 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.2e-08   6.9e-06     479     536 ..       2      63 ..       1      66 [. 0.80

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.2e-08
    TIGR01842 479 DePnanLDeeGeqalakalkelkarkitvvvit.h..rpsllelvdkilvlkdGalk.afGe 536
                  DeP + LD++    l++a+++l   + t+vv t h  r ++l l +++l++++G  +  fG+
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATiHqpRSEILGLFENLLLMSKGGHQaFFGK 63 
                  9*********************9887777776645335689**********98765505676 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.8e-07   3.9e-05     170     205 ..       2      37 ..       1      66 [. 0.89

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.8e-07
    TIGR02315 170 DEPiasLDpksskqvmdllkrinkekgitvivnlHq 205
                  DEP++ LD ++s ++m+++++++  +g tv+ ++Hq
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATIHQ 37 
                  9**********************************8 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.8e-07   0.00012     149     200 ..       2      55 ..       1      62 [. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.8e-07
    TIGR01188 149 DEPtiGLDprtrraiwdlieelkke.gvtilltthy.leeadkladrvaiidkG 200
                  DEPt+GLD++t  ++ + ++ l    g+t++ t h+   e+  l +++ +++kG
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLhGTTVVATIHQpRSEILGLFENLLLMSKG 55 
                  9*********************99879999998886245666677777777776 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.4e-07   0.00018     162     213 ..       2      55 ..       1      65 [. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8.4e-07
    TIGR03873 162 dePtnhldvsaqlellalvrela.aegvtvvvalhdl.nlaasvcdhvvvldgG 213
                  dePt  ld ++ l l+++v++la  +g+tvv+++h   +    + ++++++++G
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLAlLHGTTVVATIHQPrSEILGLFENLLLMSKG 55 
                  9*********************95689999999**8513445667777777666 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.3e-07    0.0002     483     518 ..       2      39 ..       1      49 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 9.3e-07
    TIGR02857 483 DEPtahLDaeteaevlealrela..egrtvllvaHrla 518
                  DEPt+ LDa+t  ++++a++ la  +g tv+   H++ 
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLAllHGTTVVATIHQPR 39 
                  9******************9988769999999999876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06   0.00022     628     677 ..       2      55 ..       1      59 [. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-06
    TIGR03375 628 DEPtsalDnsseekllerLkella..dkTlvlvtH..rtslLelvdriivldkG 677
                  DEPts lD+++  +l++++++l+   ++T+v + H  r+++L l + +++++kG
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALlhGTTVVATIHqpRSEILGLFENLLLMSKG 55 
                  9******************987655266666666866789***********998 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-06   0.00022     162     197 ..       2      38 ..       1      55 [. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1e-06
    TIGR02673 162 DePtGnlDdelserildllkeln.krGttvivathde 197
                  DePt  lD+++s  +++ +++l   +Gttv+ + h+ 
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLAlLHGTTVVATIHQP 38 
                  9****************999987369*******9985 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-06   0.00038     163     197 ..       2      37 ..       1      56 [. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.8e-06
    TIGR00960 163 dePtgnlddelsrdilelleevnr.aGttvlvathd 197
                  dePt+ ld  +s+ +++ ++++    Gttv+ + h+
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALlHGTTVVATIHQ 37 
                  9********************986268888887786 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05    0.0026     428     483 ..       2      59 ..       1      65 [. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
    TIGR02633 428 deptrGvdvGakyeiyklinqlaq.eGvaii.vvsselaevlGlsdrvlvigeGklka 483
                  dept G+d  +   + + +++la  +G +++  +    +e+lGl + +l++ +G  +a
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALlHGTTVVaTIHQPRSEILGLFENLLLMSKGGHQA 59 
                  9********************995378777625788899**************98776 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   1.7e-05    0.0037     496     529 ..       2      37 ..       1      38 [. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.7e-05
    TIGR02868 496 DEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                  DEPt +LDa+t+  l++++   a ++g+tvv   h+
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQtlALLHGTTVVATIHQ 37 
                  9****************9987688899999988887 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.1e-05    0.0046     157     192 ..       2      37 ..       1      65 [. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-05
    TIGR03864 157 DeatvGLDiesraalveevrelvreeglsvLWathl 192
                  De+t GLD+++  +l+++v++l+  +g +v+ + h 
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATIHQ 37 
                  9*****************************999995 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.2e-05     0.009     152     185 ..       2      36 ..       1      39 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.2e-05
    TIGR01166 152 dePtagldpaGaeqlleilrklr.eeGktvvisth 185
                  dePt+gld++    l+++++ l   +G+tvv + h
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLAlLHGTTVVATIH 36 
                  9*******************997358999998888 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.8e-05      0.01     150     201 ..       2      54 ..       1      57 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.8e-05
    TIGR02770 150 DePttdlDvvvqaevLklleelrekrglgillithDl.gvvaeladevavmek 201
                  DePt+ lD+++ +++++ +++l   +g++++   h   + +  l +++++m+k
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATIHQPrSEILGLFENLLLMSK 54 
                  9****************************998888641335555555555555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     6e-05     0.013     166     217 ..       2      55 ..       1      59 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6e-05
    TIGR02211 166 dePtgnldkktakkifelllelnkekntallvvthdl..elakkldrvlelkdg 217
                  dePt+ ld++t+ ++++ ++ l   ++t+++   h+   e+   ++++l +++g
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALLHGTTVVATIHQPrsEILGLFENLLLMSKG 55 
                  9****************************9999998522567777777777665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012     0.025     159     194 ..       2      38 ..       1      43 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
    TIGR03608 159 DEPtgsLDkknreevlellkelke.egktiiivtHdp 194
                  DEPt+ LD+ ++ ++++ ++ l+  +g+t++   H+p
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLALlHGTTVVATIHQP 38 
                  9*******************99862677777777876 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.03     163     217 ..       2      56 ..       1      66 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    TIGR03258 163 deplsaldaqlrasvveelkalhrelpeltvlyvthd.rdealvladkillmkeGs 217
                  dep s lda    +++  +++l   l   tv+   h+ r+e l l +++llm +G 
  MMETSP1174-20130828|18977_1   2 DEPTSGLDATTSLTLMRAVQTLA-LLHGTTVVATIHQpRSEILGLFENLLLMSKGG 56 
                  9************9999999986.5777888887776499************8774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.57
# Mc/sec: 152.47
//
Query:       MMETSP1174-20130828|18972_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 802.35
//
Query:       MMETSP1174-20130828|18978_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 188.98
//
Query:       MMETSP1174-20130828|18982_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|18980_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1174-20130828|18983_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   35.5   0.3    1.8e-09   35.2   0.2    1.0  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00075   15.2   0.1    0.00075   15.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   8.6e-13   1.8e-09      92     146 ..       9      64 ..       3      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 8.6e-13
    TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedka 146
                  +l +++++++ +  lH+ givh D+   N+++ kd+++ + DfGL+ +++e++ ka
  MMETSP1174-20130828|18983_1   9 RLAMIEDMAKGMIYLHELGIVHLDIKSMNMLLdKDETIKIADFGLSCVKEEIKTKA 64 
                  4578999*************************446677789***********9988 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-07   0.00075      90     137 ..      18      62 ..       8      67 .] 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.6e-07
    TIGR03903  90 DalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved 137
                   ++   h+ G+vh D+k  n+++   d++++ k+ DFG++ +  +++ 
  MMETSP1174-20130828|18983_1  18 KGMIYLHELGIVHLDIKSMNMLL---DKDETIKIADFGLSCVKEEIKT 62 
                  567788**************998...5667899*******99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|18984_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.6   0.0      0.012   13.4   0.0    1.1  1  TIGR01453 grpIintron_endo: group I intron endonuclease


Domain annotation for each model (and alignments):
>> TIGR01453  grpIintron_endo: group I intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-06     0.012     159     205 ..      43      89 ..      12      93 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3e-06
    TIGR01453 159 keaksakkvnvydkenkllveFdsiaeaarelkisrktiskyiksgk 205
                  +  + +k+v+v+d+ +  + +F+s ++aa+ ++++   +s+++++++
  MMETSP1174-20130828|18984_1  43 SRHRVKKPVKVLDSAGTVIGSFESGKAAAEAFEVNFRYVSDCANGKR 89 
                  2222368************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.71
# Mc/sec: 184.04
//
Query:       MMETSP1174-20130828|18990_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.94    4.8  14.3        1.1    4.6   9.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        9.3    2.2  15.0         11    2.0  10.4    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.9   0.00055       1.1     666     811 ..      32     179 ..      16     185 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00055
    TIGR00927 666 nsiirstiyqlmlhsldplgearlskdkeeellqeeakltqtkke..eskdeeepaklpevtvtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegege 811
                  +s  +    +l    +d ++  r  k  eee++  +++  ++kk   +   ++e a+l + + + + +    g +++  + + +  + + k+e+   e+e++   +  +  +++  +e e+e++  ae++++ + e e++  +e+  e
  MMETSP1174-20130828|18990_1  32 QSARQQQQPELSANRIDRVKANRARKMMEEEAVLRAKVERKAKKPigSGGIHDEIAELEARVAAATSSASRYGIEKQLKAKKATLVREQRKAEQHAREGERKMHQQKAHAVQAKRAREAEEEQQRAAEQQQKAQWEMEQQRAKEQAVE 179
                  4444455556777778888889999999988888777766666541144457888888776666666666666666666667777788888999999988886666666666666666677777777777766665554444443333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  10.4    0.0052        11     236     366 ..      29     170 ..       5     184 .. 0.51

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0052
    TIGR00934 236 kstrvpsekfakrresrdidpedlyrsimmlqekheatakirdk..........iseanslaaesdees.ses.rriqekikrrlstssieknsqqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmve 366
                  + ++++ ++ +++  ++ id  + +r+ +m+ e+   +ak+ +k           +e  +l+a+    + s s   i++++k + +t  +e+ + ++  r  + k+ ++  +av+++r++  +  +++  e+ ++a+   +m +
  MMETSP1174-20130828|18990_1  29 SGSQSARQQQQPELSANRIDRVKANRARKMMEEEAVLRAKVERKakkpigsggiHDEIAELEARVAAATsSASrYGIEKQLKAKKATLVREQRKAEQHAREGERKMHQQkAHAVQAKRAREAEEEQQRAAEQQQKAQ--WEMEQ 170
                  22333444444555556667777777777777666666666666666777777533334444433333312221347777777777777777666666666666666643344444443333333333333333222..11211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       623  (0.151877); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|18991_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 555.45
//
Query:       MMETSP1174-20130828|18987_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 873.64
//
Query:       MMETSP1174-20130828|18995_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1001.56
//
Query:       MMETSP1174-20130828|18996_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 915.41
//
Query:       MMETSP1174-20130828|18997_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|18999_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|19000_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.0   0.0      0.028   11.0   0.0    1.0  1  TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC


Domain annotation for each model (and alignments):
>> TIGR00931  antiport_nhaC: Na+/H+ antiporter NhaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.9e-06     0.028     385     428 ..      26      69 ..       4      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.9e-06
    TIGR00931 385 nldkknlsrtaedagtlveplvPWsaaGaylagtlGvatlsylP 428
                   + +  + +t+ d  t ++++vP s+  a+  +tlGva ls l 
  MMETSP1174-20130828|19000_1  26 VVTRDHFGKTLSDLDTDIDTVVPDSELNAFWKSTLGVAQLSCLG 69 
                  567778899999****************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|19003_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|19005_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 438.54
//
Query:       MMETSP1174-20130828|19007_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|19011_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 348.30
//
Query:       MMETSP1174-20130828|19014_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|19016_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 192.91
//
Query:       MMETSP1174-20130828|19017_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|19019_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1082.31
//
Query:       MMETSP1174-20130828|19023_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 281.01
//
Query:       MMETSP1174-20130828|19029_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 225.16
//
Query:       MMETSP1174-20130828|19025_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1770.21
//
Query:       MMETSP1174-20130828|19030_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 279.06
//
Query:       MMETSP1174-20130828|19031_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|19032_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|19033_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|19037_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|19034_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.7   4.4      0.057   11.6   2.8    1.8  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.8   1.4e-05     0.057      29     115 ..     137     225 ..     123     227 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
    TIGR03142  29 atadrdelnlavYrdr.LaELerdeaeglldeaeae.aakaElerrLLadakeaeeeaasqakrssrlaalvlvvllpvlalllYlvlG 115
                  a++++ +l+  + ++r ++ L+ +++++ l+e ea  ++k E e +LL+++ + +e+  +++k  s+++a++l ++++vla+  + + G
  MMETSP1174-20130828|19034_1 137 AEQSASQLKEDLEKEReISRLKLEKKQQQLEEFEAPlRQKHETEITLLQKNLNMTESLLQKQKYISIALAVLLGLCVIVLAVNRFTSSG 225
                  555555666666555547889999******9988864799***********9999999999********************97666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       429  (0.104583); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 837.09
//
Query:       MMETSP1174-20130828|19039_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|19041_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-27   92.3   0.0      4e-24   83.2   0.0    2.0  2  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
    1.5e-14   51.1   0.0    4.8e-13   46.1   0.0    2.7  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0     2e-27     4e-24      18     164 ..      24     174 ..       3     187 .. 0.85
   2 !    7.3   0.0   0.00036      0.73     173     198 ..     205     230 ..     198     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 2e-27
    TIGR00706  18 kvlkklekikddksvkalvlkidSPGGtvvaseeiyeklkklk...akkpvvasvgnvaaSGgyyialaadeivanegtlvGSiGVilesvnveklleklGie..veaiksGeyKdilsdtrelteeekeilqslvnesyeqFvevvakgRn 164
                  +    l+k+ + ++   + l ++SPGGt+ +s+ +++kl+ l    ++ p++ +v +   SG+y++a+a+dei+ +e ++ GSiGVi es+ +++ le+lG++  v++  +G++K    ++ + t + +   q l++ ++ +F e v +gR 
  MMETSP1174-20130828|19041_1  24 DYGGLLDKAFS-SKPSCVALVVNSPGGTPAQSSMLFKKLRTLRgehSQVPLLCFVEDHCCSGAYFVACACDEILVDEVSVLGSIGVITESFGIDQALENLGVDrrVQTNTAGRWKGANDPFSKETLDGRAQTQFLLDRTFSHFEESVRAGRG 174
                  55555666655.3445677889*******************98877899*****************************************************73357789**************************************9996 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00036
    TIGR00706 173 lAdGrvftgrqalklkLvDklgsldd 198
                  + dG v++gr a++l+L D + + d 
  MMETSP1174-20130828|19041_1 205 IFDGSVYDGRTAVRLGLADVVVKSDM 230
                  569****************9987765 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.3e-16   4.8e-13     312     503 ..       3     195 ..       1     262 [] 0.78

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2.3e-16
    TIGR00705 312 kiavvyleGaivdgreteenvggDtvaallrkarsDddvkAvvLRvnspGGsvfAseiirrelealkaaG..kPvivsmGavAAsGgYWiasaadyivAdpntitGsiGvfsvlptvenlldriGvhvDevstselanv....sllrplteeeqaimqlsveagYerFlevvskaRnlskeqvdkvAqGrvwtGedAk 503
                  +++vv ++G+i     + +++    ++ ll+ka s  +   v L vnspGG  + s ++ ++l +l+ +    P +  +     sG+Y++a a d i+ d   + GsiGv++  + +++ l+++Gv+   v+t+           ++  t + +a  q  ++++++ F e v ++R   +   ++  + ++ +Ge  +
  MMETSP1174-20130828|19041_1   3 HVSVVSMKGTIGP---DSGEINVRDYGGLLDKAFSS-KPSCVALVVNSPGGTPAQSSMLFKKLRTLRGEHsqVPLLCFVEDHCCSGAYFVACACDEILVDEVSVLGSIGVITESFGIDQALENLGVDR-RVQTNTAGRWkganDPFSKETLDGRAQTQFLLDRTFSHFEESVRAGRGDRLMFTEAKLEAKMLLGETTV 195
                  5888999999854...33445556799999999875.34678888*********************97654589****************************************************86.577665544331123455555556678888899999999999999997655555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.27s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 735.77
//
Query:       MMETSP1174-20130828|19035_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.1   6.4      0.012   12.2   0.5    2.1  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.5     3e-06     0.012      20     157 ..      26     153 ..      20     194 .. 0.74
   2 !    8.2   1.9   5.2e-05      0.21     243     277 ..     189     226 ..     179     230 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3e-06
    TIGR01932  20 lfvikEgergiil.rfGkilkddndkalvyeaGLhvkiPliesvkildakiqtvDgeadriv.tkekk..dlivdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssrdeqldtleakeal 157
                  l+ +  g+r++i  rf  +l d          G h+kiP+i+   i+d +      e ++i  tk+ +  ++++   ++ + e ++  Y+ +g    +  +  + ++++++l+++++k++  e++++ ++  +  ++++  l
  MMETSP1174-20130828|19035_1  26 LYSVDGGQRAVIFdRFQGVLPDAR------SEGTHLKIPFIQDPIIFDIRSRA--REVKSITgTKDLQmvNIWLRILSRPQEEHLSEIYQQLG---TNFDDRVLPSIVNEVLKGIVAKYDAVELLSKRQE--I-STQIRLEL 153
                  678888999887658999998888......89***************977554..34444432788873357889999999************...4556778999*****************9988775..4.33333333 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 5.2e-05
    TIGR01932 243 kaekEvv.kiLseA..ereariikgegdaeaAklysda 277
                  + e E++  ++++A  er+a+ii++eg+ eaA + ++a
  MMETSP1174-20130828|19035_1 189 QQEAERQhWVVAKAdqERQAAIIRAEGESEAATIVTKA 226
                  3334433146677722579**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.25s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 1349.22
//
Query:       MMETSP1174-20130828|19040_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.23s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1523.23
//
Query:       MMETSP1174-20130828|19044_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 267.98
//
Query:       MMETSP1174-20130828|19042_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.53
# Mc/sec: 1001.12
//
Query:       MMETSP1174-20130828|19043_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.7   4.2      0.016   11.4   2.9    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        2.6    5.3  23.8        3.4    5.0  16.2    1.4  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.9     8e-06     0.016     320     442 ..      49     152 ..      26     185 .. 0.37

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8e-06
    TIGR02442 320 ekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrs.dkrgryvkaernreeaddlavdAtlr 442
                  +++++++++++++++++++++++                 g  +++++ ++++a ++ +s +++a+++  ++  ++  a++++r  +  G   ++ + +++g+y +++r + ++++++ d t  
  MMETSP1174-20130828|19043_1  49 QQQQQQQQQQQQQQQQQQQQQQH-----------------GVASSSSSSSSSSAASSVTS-SSQAVTSPPSPPPPQ-EAAEEKRSYRLYGVIVHAGAsSTNGHYYAYTRDS-TTRHVETDDTEN 152
                  11111111111111111111111.................11111111111111111111.111111111111111.1111112333333333332224555555555554.555555555544 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  16.2    0.0016       3.4      12      70 ..      40      99 ..      34     148 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0016
    TIGR03593 12 fvilllwqawqkdpkpepqkppaaaqqaesqsaa.....aaaaasaaaaasadapsaaaaaaaa 70
                 +++ l++q+ q+++++++q+  +++qq+++q+++     +  ++s++++a+++++s+++a +++
  MMETSP1174-20130828|19043_1 40 VLLTLGMQQQQQQQQQQQQQ--QQQQQQQQQQQHgvassS--SSSSSSSAASSVTSSSQAVTSP 99
                 56667777777776665333..333333333333677431..3333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       597  (0.145539); expected 82.0 (0.02)
Passed bias filter:                      276  (0.0672843); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 563.95
//
Query:       MMETSP1174-20130828|19046_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|19049_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 574.27
//
Query:       MMETSP1174-20130828|19051_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   11.0   0.0      0.064   10.4   0.0    1.2  1  TIGR01614 PME_inhib: pectinesterase inhibitor domain


Domain annotation for each model (and alignments):
>> TIGR01614  PME_inhib: pectinesterase inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.6e-05     0.064      97     138 ..      33      74 ..      29      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.6e-05
    TIGR01614  97 aledCvelysdavdaLkkalaslkskdysdvetwlssAltdp 138
                   l+dCv ++++a+ +L k++++l + ++ ++e+ + +A++++
  MMETSP1174-20130828|19051_1  33 LLDDCVADFGIAQWNLGKTVRELNTTSLGSLEMGMFHAAVEI 74 
                  599******************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 513.81
//
Query:       MMETSP1174-20130828|19052_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|19058_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.71
# Mc/sec: 113.40
//
Query:       MMETSP1174-20130828|19056_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   44.1   1.5    1.3e-06   26.1   0.1    1.4  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.8e-10   38.9   0.0    3.3e-10   38.1   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.8e-09   35.6   0.0    3.3e-09   34.7   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    1.9e-05   22.2   0.0      3e-05   21.6   0.0    1.2  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0038   14.6   0.0     0.0056   14.1   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.013   11.9   0.1       0.02   11.3   0.1    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      0.021   12.3   0.0      0.037   11.5   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.038    9.6   0.0       0.05    9.2   0.0    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   2.4e-09   1.3e-06     343     393 ..     158     206 ..      79     217 .. 0.80
   2 !   24.5   0.1   7.4e-09   3.8e-06     353     393 ..     166     206 ..     160     246 .. 0.60

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.4e-09
    TIGR01130 343 deepVkvvVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekyk 393
                  d e  +++  +nf ++v++++K  ++e+Y   CG Ck++ p+++e+++ ++
  MMETSP1174-20130828|19056_1 158 DAE--VMIDEDNFSSLVVNSDKVWILEYYSDKCGSCKEFLPTWHEVSKSLS 206
                  222..345568***********************************99886 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 7.4e-09
    TIGR01130 353 knfdeivldetKdVLvefYApWCGHCkkLapiYeelaekyk 393
                  +nf ++v++++K  ++e+Y   CG Ck++ p+++e+++ ++
  MMETSP1174-20130828|19056_1 166 DNFSSLVVNSDKVWILEYYSDKCGSCKEFLPTWHEVSKSLS 206
                  56666666666666666666666666666666666665554 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   6.4e-13   3.3e-10       2      82 ..     164     244 ..     163     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 6.4e-13
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae..kelaskfkv..sgfPtlkffkkgk 82 
                   ++nf +lv++++k++++e+y+  CG Ck++ P++++++k+l+     +k+++v+ +++   +la++ +v  +g P ++++++++
  MMETSP1174-20130828|19056_1 164 DEDNFSSLVVNSDKVWILEYYSDKCGSCKEFLPTWHEVSKSLSG----LKLGRVNIDNKkgMKLAKDHGVlnRGIPAVRVIHNKR 244
                  579***************************************96....5566666655522788999998667999999988765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   6.4e-12   3.3e-09       2      78 ..     164     243 ..     163     269 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 6.4e-12
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeq..eiaakygi..rsiPtlllfkng 78 
                  +e+nf++ v +sdk+ +++++ + Cg+Ck + P+ +e++k+l++ +k+ ++n+d+++  ++a++ g+  r iP + +++n 
  MMETSP1174-20130828|19056_1 164 DEDNFSSLVVNSDKVWILEYYSDKCGSCKEFLPTWHEVSKSLSG-LKLGRVNIDNKKgmKLAKDHGVlnRGIPAVRVIHNK 243
                  6789***********************************98885.*********987336789999866689998776654 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.8e-08     3e-05      17      84 ..      33     100 ..      19     104 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.8e-08
    TIGR02552  17 qleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldld 84 
                  + ++++  A ++  +g++++A+ lF+  a ld +++ +w  L+++ ++l+  +eA   +++a ++++ 
  MMETSP1174-20130828|19056_1  33 DAQEVHDRALEFAIAGDLNQALPLFERAAHLDTANHGFWSDLGVTQMRLNYLDEAKISFEHAEKIKPG 100
                  5688999*******************************************************999875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0056      35     101 ..      38     104 ..      18     109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
    TIGR02521  35 vqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                   + ale+  +gdl++A    e A +ld+++   ++ l++  ++l  l++A+ sf++A ++kp +  +
  MMETSP1174-20130828|19056_1  38 HDRALEFAIAGDLNQALPLFERAAHLDTANHGFWSDLGVTQMRLNYLDEAKISFEHAEKIKPGTELI 104
                  5679999999*************************************************99987665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.9e-05      0.02     394     461 ..      29      96 ..      11     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
    TIGR00990 394 kdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakk 461
                  +  +d++  + ra    i g+ ++a   ++++  ld+ +   +  l+v+q +l+ +++++  f +a k
  MMETSP1174-20130828|19056_1  29 QMGHDAQEVHDRALEFAIAGDLNQALPLFERAAHLDTANHGFWSDLGVTQMRLNYLDEAKISFEHAEK 96 
                  4444555455666555599*********************99*********************99987 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.1e-05     0.037      33     115 ..     147     228 ..     131     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.1e-05
    TIGR00385  33 saligkpvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake..glrivgvdykDesqkalkfLkelG 115
                    l + ++++e ++ + ++ ++ +  v++  k+ +l  ++  C+ C++  p+ +e++k+  gl++  v+   +++k++k+ k++G
  MMETSP1174-20130828|19056_1 147 VDLYNDDIDDEDAEVMIDEDNFSS-LVVNSDKVWILEYYSDKCGSCKEFLPTWHEVSKSlsGLKLGRVNI--DNKKGMKLAKDHG 228
                  556667777777777777756655.889999**************************9633788877776..4567888888887 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   9.7e-05      0.05     581     645 ..      48     112 ..      41     128 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 9.7e-05
    TIGR02917 581 gelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvy 645
                  g+l++al + e aa l  ++   ++ lg +q+    l++a+ sf+ +++++p   l+ + l + +
  MMETSP1174-20130828|19056_1  48 GDLNQALPLFERAAHLDTANHGFWSDLGVTQMRLNYLDEAKISFEHAEKIKPGTELIRANLVALQ 112
                  45555555555555555555555555555555555555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 847.66
//
Query:       MMETSP1174-20130828|19062_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.064    8.7  26.2      0.079    8.4  18.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.16    7.4  25.8       0.18    7.3  17.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  18.2   3.9e-05     0.079     670     851 ..       9     193 ..       2     196 .] 0.63

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 3.9e-05
    TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeel...keleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkk 851
                   ++e+ ++ +l ++l  L++++e ++++++  ++++   +++l+ + ++ e i k +  l       ++ +e l +k++++e+e+ ++ ++     ++++  ++++ ++ak  e   +l ++ +e + + + e++++l+e ++++ea+ +++e++l+kl   +e+++ +++e ++ + +++e+ +
  MMETSP1174-20130828|19062_1   9 RQREHGQEMELGNELSRLKSKKEYATKDQDVSKEKIGGIRRQLKVQARERESILKSQRLLTPAIVSRAAVIETLVAKIEAVEDEMFADFSKRlgvSDIREFEKKQQGSMAKKAEMRRALREHRAEVEAQLSYEKSRALDEPIKKVEAAQKKTEQRLKKLLKTRESMSVKVEETEALMSQAQEKLA 193
                  34455566667777778888888888888888888888888888877777777777777777777777778888888888877777665543111222222233333333333333455555555566666677777777777777777777777777777777777777777777777766644 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  17.9   8.7e-05      0.18     692     872 ..      13     194 ..       1     196 [] 0.40

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 8.7e-05
    TIGR02168 692 eekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elk.eeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeelee 872
                    +  el +el++l+++ e ++++ +  ++++  ++r+l+ +  e e++ k+++ l+  + ++ + +e l +++e+ e+e+   +++   + ++i e e++ +   ++ ++ r+al+e +ae++ +l+ e+ + + e ++++e+  +++e++l++l ++ e+++ ++e+ ea +++++e+l+e
  MMETSP1174-20130828|19062_1  13 HGQEMELGNELSRLKSKKEYATKDQDVSKEKIGGIRRQLKVQARERESILKSQRLLTPAIVSRAAVIETLVAKIEAVEDEMFADFSKRLGV-SDIREFEKKQQGSMAKKAEMRRALREHRAEVEaQLSyEKSRALDEPIKKVEAAQKKTEQRLKKLLKTRESMSVKVEETEALMSQAQEKLAE 194
                  2233344445555555444444444444444444455555555555555555555555555555555555555554444443333332211.1222222222222233333333333333333322221222222344555555555555555555555555555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       517  (0.126036); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 663.33
//
Query:       MMETSP1174-20130828|19065_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|19068_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 491.96
//
Query:       MMETSP1174-20130828|19071_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|19070_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 697.07
//
Query:       MMETSP1174-20130828|19074_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|19075_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.84
# Mc/sec: 65.99
//
Query:       MMETSP1174-20130828|19072_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.7   1.2      0.015   12.2   0.0    2.2  2  TIGR02614 ftsW: cell division protein FtsW


Domain annotation for each model (and alignments):
>> TIGR02614  ftsW: cell division protein FtsW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.6e-06     0.015     251     295 ..     172     216 ..     167     222 .. 0.88
   2 ?   -0.6   1.0     0.029   1.2e+02     162     195 ..     565     598 ..     530     612 .. 0.50

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-06
    TIGR02614 251 peahtDFifavigEElGligvlvvillfallvlrglrialraedl 295
                  ++ +tDF+ ++ g El ++  ++++l+fa++v+  lr+ ++a++ 
  MMETSP1174-20130828|19072_1 172 KKCQTDFVKSIRGFELKFWFFMLLVLIFAVFVCYRLRLSSTANQD 216
                  5679*****************************999999888754 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.029
    TIGR02614 162 vlvllllvllflagarlrllllllllvllllvll 195
                  v++l++ ++l +  ++ +  ++++l+v++l+++l
  MMETSP1174-20130828|19072_1 565 VILLMFALMLQVDAVSPSSGMGVFLIVIVLMTAL 598
                  2222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.56
# Mc/sec: 1916.20
//
Query:       MMETSP1174-20130828|19084_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1174-20130828|19085_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|19087_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|19089_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|19090_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1515.43
//
Query:       MMETSP1174-20130828|19093_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 860.37
//
Query:       MMETSP1174-20130828|19092_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.8   0.0     0.0027   15.3   0.0    1.2  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.6e-07    0.0027      22      83 ..      87     152 ..      78     217 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.6e-07
    TIGR03137  22 vevtded.lkGkwsvlvfypadftfvcp.teledladkyeelk.elgv.evysvstdthfvhkawh 83 
                  ++++ +d + Gk   ++  p++ft  c  t l   +  yee+  +l v evy  s++  fv + w 
  MMETSP1174-20130828|19092_1  87 KDLSTDDiFAGKRIAMFSLPGAFTPTCSsTHLPGWEAAYEEMTtSLKVdEVYCLSVNDAFVMRKWG 152
                  566655515799999999*********5499*********9962577768**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1202.57
//
Query:       MMETSP1174-20130828|19097_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   16.6   0.0       0.15    8.6   0.0    2.2  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
  ------ inclusion threshold ------
      0.019   11.6   0.1       0.74    6.4   0.0    2.2  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
      0.035   10.7   0.0       0.12    8.9   0.0    1.8  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00011      0.15     148     183 ..      13      48 ..      10      67 .. 0.86
   2 !    5.6   0.0   0.00089       1.2     213     259 ..     157     202 ..     146     225 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00011
    TIGR03385 148 kvekvvviGgGyiglemvealkergkevtliersek 183
                  k ++v++iG+G  ++ m+ +l +   +vt+++rs +
  MMETSP1174-20130828|19097_1  13 KDQNVILIGSGATAVTMLPNLSKEASHVTMLQRSPT 48 
                  6689****************************9854 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00089
    TIGR03385 213 evksvegeekvevltsgkvyqaDlvilavGvkPnsel.ikssqlklgk 259
                  ++++   +++   l+sgk+ qaDlv+ a+G + + ++ + ++ ++++ 
  MMETSP1174-20130828|19097_1 157 HIETFTPNGI--KLKSGKHLQADLVVTATGFNMQANFpMSNAVVRIDG 202
                  5555555666..89****************999998833444555555 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00054      0.74     151     186 ..      13      48 ..       8      52 .. 0.90
   2 ?    2.9   0.0     0.006       8.3     211     265 ..     153     204 ..     141     228 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00054
    TIGR04018 151 vkqkvvvvGgknsavdaalelyrkgaevtlvvrgee 186
                   +q+v+++G+   av    +l ++ ++vt++ r  +
  MMETSP1174-20130828|19097_1  13 KDQNVILIGSGATAVTMLPNLSKEASHVTMLQRSPT 48 
                  579****************************99876 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.006
    TIGR04018 211 lfesevkeieeesvtletpegeveeiendfvlaltGyrpdlel.leklgveleede 265
                   ++ ++++ +++ ++l++  g++  +++d v++ tG++ + ++ ++++ v+++ ++
  MMETSP1174-20130828|19097_1 153 IVTDHIETFTPNGIKLKS--GKH--LQADLVVTATGFNMQANFpMSNAVVRIDGKQ 204
                  455667777777777776..555..99***********999995566667777664 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   9.1e-05      0.12     140     175 ..      13      48 ..       9      64 .. 0.91
   2 ?   -1.6   0.0      0.15     2e+02      76     111 ..     155     186 ..     134     202 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.1e-05
    TIGR01292 140 knkevavvGggdsAveealyLskiakkVtlvhrrdk 175
                  k+++v+++G+g +Av     Lsk a++Vt+++r  +
  MMETSP1174-20130828|19097_1  13 KDQNVILIGSGATAVTMLPNLSKEASHVTMLQRSPT 48 
                  89*****************************99765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.15
    TIGR01292  76 leevkkvdkkerpfkvltedekeykakaviiAtGak 111
                  ++++++   +     ++++++k+ +a+ v+ AtG +
  MMETSP1174-20130828|19097_1 155 TDHIETFTPNG----IKLKSGKHLQADLVVTATGFN 186
                  34444433332....445556677788888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 1634.15
//
Query:       MMETSP1174-20130828|19104_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|19106_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 534.90
//
Query:       MMETSP1174-20130828|19107_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|19114_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1174-20130828|19115_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1174-20130828|19113_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-16   56.8   0.0    4.1e-13   47.5   0.0    2.1  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
      2e-13   48.4   0.0    5.4e-13   47.0   0.0    1.8  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.3e-09   36.0   0.0    7.5e-09   33.5   0.0    2.1  2  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     3e-16   4.1e-13      21      85 ..       2      71 ..       1      91 [. 0.85
   2 !    7.5   0.0   0.00041      0.57     199     299 ..     221     322 ..     146     335 .. 0.67

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3e-16
    TIGR01130 21 vLveFYAPWCGHCksLaPeYekAAeelkkksp.....kvklakvDateekelaqkygvsGyPtLkifrng 85
                 +Lv+FYAPWC H k++aP   ++A+ l +  +     +v ++kv     +el + ++++ yPtLki++ +
  MMETSP1174-20130828|19113_1  2 LLVNFYAPWCAHSKAMAPTVGSTARLLGELRSqglpvNVGVGKVNVDLSTELKEIHNIKSYPTLKIIKLD 71
                 79**********************987665432222247789************************9965 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00041
    TIGR01130 199 letdvealekfvkkeslplvgeftketaa.kifesk.plkvlllnveeskkkseellekflevakkfkgk.kvkfavadeeefgkeleelglkaekapavvils 299
                  +  d e+l+++v     p ++ f+ ++++ +i++s+ +   +ll ++e++  ++ +l +++ +a +++g+ +   a +de + g +++   +   ++pavv++s
  MMETSP1174-20130828|19113_1 221 SGRDGESLARWVMGAIWPTISRFDPSSSQgDIIRSGvIGGLMLLVADEKDFLHSDWLGALEVTADAYRGEaHFLYANEDEPRIGPIVQLASVT--SFPAVVLIS 322
                  3357789*****************9987725566665556666666666678*****************644444555555566666665555..567766655 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   3.9e-16   5.4e-13      17      83 ..       2      73 ..       1      79 [. 0.82

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 3.9e-16
    TIGR01126 17 vlvefyaPWCGhCkklaPeyeklakel...kkeee..kvkiakvdataekelaskfkvsgfPtlkffkkgkk 83
                 +lv+fyaPWC h k++aP+  + a+ l   +++    +v ++kv+ +  +el++  +++++Ptlk++k +++
  MMETSP1174-20130828|19113_1  2 LLVNFYAPWCAHSKAMAPTVGSTARLLgelRSQGLpvNVGVGKVNVDLSTELKEIHNIKSYPTLKIIKLDRT 73
                 79******************9999865111444332268899************************998775 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.5e-12   7.5e-09      17      80 ..       2      73 ..       1      77 [. 0.79
   2 ?   -1.0   0.0      0.32   4.4e+02      39      75 ..     283     321 ..     279     336 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 5.5e-12
    TIGR01068 17 vlvDfwAeWCgpCkmlaPvleela........keleekvkvvKlnvdeeqeiaakygirsiPtlllfkngke 80
                  lv+f+A+WC   k++aP++   a        + l  +v v K+nvd ++e+ +  +i+s Ptl ++k +++
  MMETSP1174-20130828|19113_1  2 LLVNFYAPWCAHSKAMAPTVGSTArllgelrsQGLPVNVGVGKVNVDLSTELKEIHNIKSYPTLKIIKLDRT 73
                 69****************9977651111111134556899************************99997765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.32
    TIGR01068  39 lakeleekvkvvKlnvdeeq..eiaakygirsiPtlllf 75 
                   a+ ++++++++  n de +   i + ++++s P ++l+
  MMETSP1174-20130828|19113_1 283 TADAYRGEAHFLYANEDEPRigPIVQLASVTSFPAVVLI 321
                  566667777777777776542246677899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.27
# Mc/sec: 1745.19
//
Query:       MMETSP1174-20130828|19117_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|19121_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 354.49
//
Query:       MMETSP1174-20130828|19118_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 191.16
//
Query:       MMETSP1174-20130828|19122_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|19123_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 212.33
//
Query:       MMETSP1174-20130828|19126_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|19125_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   14.5   0.4      0.017   13.3   0.3    1.6  1  TIGR00494 crcB: protein CrcB


Domain annotation for each model (and alignments):
>> TIGR00494  crcB: protein CrcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   4.2e-06     0.017       3      69 ..      64     132 ..      62     137 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.2e-06
    TIGR00494   3 iilGgalGallRyllskvlsallkgeslPlgtltvnliGalilGllaylsqlavisad..lklliatGf 69 
                  i +G+ + a +R+   ++++  l   +lP+    vnl+G +  G+   +  ++++++     + +  Gf
  MMETSP1174-20130828|19125_1  64 ILIGSLPKAGIRFGGNTFFKGELLKMDLPIPKTIVNLLGGVCAGICEAIFAVTPMETVktKTIQMNCGF 132
                  8899999******9999998888888*******************655555555554310334555666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1175.13
//
Query:       MMETSP1174-20130828|19130_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1174-20130828|19132_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 699.05
//
Query:       MMETSP1174-20130828|19133_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-19   66.1   0.1      9e-19   65.7   0.1    1.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.2e-17   62.3   0.0    1.4e-17   62.0   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    6.2e-17   59.5   0.1    9.1e-17   59.0   0.1    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.9e-15   55.0   0.1    2.2e-15   54.8   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    9.3e-13   46.0   0.1    1.2e-12   45.6   0.0    1.2  1  TIGR02415 23BDH: acetoin reductases
    4.5e-12   43.8   0.0    5.4e-12   43.5   0.0    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.5e-11   40.4   0.3    5.4e-11   40.2   0.2    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.8e-08   31.2   0.2    3.3e-08   31.0   0.1    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    5.6e-08   30.2   0.1    6.7e-08   29.9   0.1    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.1e-06   25.1   0.3    1.3e-06   25.0   0.2    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    9.3e-06   23.0   0.0    9.9e-06   23.0   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.6e-05   20.8   0.1    4.5e-05   20.5   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   2.6e-21     9e-19      99     247 ..       2     144 ..       1     152 [. 0.84

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 2.6e-21
    TIGR03971  99 anaGvl.sygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlas 247
                  +naG++ ++g + e +  + + ++dvn+kG   +++a vP ++erk  G +i +ss ag  a pg a y+a+k  + ++t +l  el    +rv +++P  v+     +    ++  + +++   +   + +   ++++dvad+v++ a+
  MMETSP1174-20130828|19133_1   2 NNAGLAaGFGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLERK-RGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEGTEFS--EVRFKGDVKKVEALY---KGIA-ALSADDVADAVVYAAT 144
                  79998537**************************************.67899*************************************************99775553..344444444444444...3333.4568899999888775 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   4.1e-20   1.4e-17      95     220 ..      16     143 ..       1     148 [. 0.75

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 4.1e-20
    TIGR01830  95 mkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfie..tdmteklsekvkkkileqiplkrlgkpeevaaavafLa 220
                      d + +++vn+kg+  +++a +  m+++++G++in+ss++g +  +g a Y+asKa + ++t +l  El +  ++v +v+PG+++  t++ e+  +   kk+++        ++++va+av++ a
  MMETSP1174-20130828|19133_1  16 YDMADLNVMMDVNVKGLAACCRAFVPGMLERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNegTEFSEVRFKGDVKKVEALYKGIAALSADDVADAVVYAA 143
                  4456788899*****************************************************************************73345544322222222222222222335677777777765 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   2.6e-19   9.1e-17      84     184 ..       2     103 ..       1     149 [. 0.93

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 2.6e-19
    TIGR01963  84 nnAGiqh.vapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvr 184
                  nnAG+      + e+++++ + +++vn+++ +   ra +p+m ++++G +in++s+ g  a++  + Y a+K ++  +t +l  E  +t +++ ++ Pg+v+
  MMETSP1174-20130828|19133_1   2 NNAGLAAgFGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVN 103
                  99999863689******************************************************************************************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   6.5e-18   2.2e-15      95     196 ..      14     118 ..       1     151 [. 0.76

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 6.5e-18
    TIGR01829  95 kkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyia..temvk.avredvl 196
                     + ++ + ++d+n++++    r  + gmler+ G +in+ss+ G+    G a y a+ka +  +t al +e  ++ + v +++PG+++  te  +   + dv+
  MMETSP1174-20130828|19133_1  14 SEYDMADLNVMMDVNVKGLAACCRAFVPGMLERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNegTEFSEvRFKGDVK 118
                  556677888899****************************************************************************96335554312344443 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   3.6e-15   1.2e-12      83     233 ..       2     143 ..       1     149 [. 0.80

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 3.6e-15
    TIGR02415  83 nnaGval.vtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsfla 233
                  nnaG+a+    + e +  +l+ + +vnvkg     +a +  + + +++G++in +siag+ ++p  + y+++k av ++t +   eL +    v + +PG v+        ++ +e+  k   +k+e+  + i+     + +dva+ v + a
  MMETSP1174-20130828|19133_1   2 NNAGLAAgFGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLE-RKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEG------TEFSEVRFKGDVKKVEALYKGIAA---LSADDVADAVVYAA 143
                  9***987367899999*************987777777666654.678****************************************************99754......345555555555566666666655...55666666666655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   1.6e-14   5.4e-12      86     229 ..       2     145 ..       1     152 [. 0.83

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.6e-14
    TIGR01832  86 nnaGiirr.edavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyle..tnnte.alradekrnaaileriPagrwGepedlagaavflass 229
                  nnaG+     d  e+  +d + +++vn+k +   ++a+   +l++  +g++in++s+         + y ask av  +t +l +e+ ++ ++v +++PG+++  t+ +e +++ d k+ +a+ + i a    +++d+a+a+v+ a++
  MMETSP1174-20130828|19133_1   2 NNAGLAAGfGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLERK-RGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNegTEFSEvRFKGDVKKVEALYKGIAAL---SADDVADAVVYAATR 145
                  89998764278999999**************************997.9*****999875444444478*********************************97323333224567889999999999885...689999999998765 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.2   1.6e-13   5.4e-11      86     195 ..       2     113 ..       1     146 [. 0.82

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.6e-13
    TIGR03206  86 nnagwdv.lkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdt.alledvks 195
                  nnag    +++  + + a+ + ++ +n++g      a ++gm+erk+g ++n++s a+++   g a y+a k  + +++ +l  el    + v  v pg  +  + + +v  
  MMETSP1174-20130828|19133_1   2 NNAGLAAgFGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEgTEFSEVRF 113
                  8888764489999999***********************************************************************************8654144555544 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   9.5e-11   3.3e-08      98     185 ..      19     105 ..       2     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 9.5e-11
    TIGR01831  98 edwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidte 185
                  +d +++++ n+ g+    +  v  m+  rk g +i l+s++g +   g   y a+ka +   t al  el    + v  ++pg ++ +
  MMETSP1174-20130828|19133_1  19 ADLNVMMDVNVKGLAACCRAFVPGML-ERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEG 105
                  46678899999999999988876666.588899**************************************************99854 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1     2e-10   6.7e-08     108     188 ..      21     103 ..      11     151 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2e-10
    TIGR03325 108 fdevfeinvkgyllavkaalpa.lvasrgsviftvsnagfypngggalytaakhavvglvkelayela.pyvrvngvapggls 188
                  ++ ++++nvkg   + +a +p  l   rg vi   s ag  +  gga+y a+k av  +   l  el    +rv  v+pg ++
  MMETSP1174-20130828|19133_1  21 LNVMMDVNVKGLAACCRAFVPGmLERKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVtTPLRVTTVSPGWVN 103
                  67799**************996155678999999999**************************999861569*******9775 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   3.7e-09   1.3e-06     499     605 ..       2     108 ..       1     145 [. 0.84

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.7e-09
    TIGR02632 499 nnaGiavs.kpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgi 605
                  nnaG+a    ++ e    + ++ +d++++G    +r  +  + +++  g+++ ++s  + +a ++   y+a+kaa   +   l +el ++ +rv tv P  v +G++ 
  MMETSP1174-20130828|19133_1   2 NNAGLAAGfGDVSEYDMADLNVMMDVNVKGLAACCRAFVPGMLERK-RGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEGTEF 108
                  89999986368999999*************9999988777777766.56889999***********************************************999765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.9e-08   9.9e-06     110     197 ..      17     103 ..       1     129 [. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.9e-08
    TIGR01500 110 DsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlD 197
                  D+  ++   d nv  l +    ++  + e       v+nlss++  +++++ a+YCaskaa +    +L  e     ++v   +pG ++
  MMETSP1174-20130828|19133_1  17 DMADLNVMMDVNVKGLAACCRAFVPGMLE--RKRGHVINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVtTPLRVTTVSPGWVN 103
                  55566666777777766666666665553..345579*********************************9998889999999999775 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.3e-07   4.5e-05     155     244 ..      51     143 ..      27     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.3e-07
    TIGR02685 155 ivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeev.keeyrrkvplgqrea..saeqiadvviflv 244
                  ++nl     +   +g ++y  +k a+e +t +   el +  +rv +v+pG     ++ +e   k + ++   l++  a  sa+++ad+v++  
  MMETSP1174-20130828|19133_1  51 VINLSSIAGKAAYPGGAFYCASKAAVESITAALRAELVTTPLRVTTVSPGWVNEGTEFSEVRfKGDVKKVEALYKGIAalSADDVADAVVYAA 143
                  78888888888899999*********************************9988888877541667776668998654449********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 805.59
//
Query:       MMETSP1174-20130828|19134_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 578.02
//
Query:       MMETSP1174-20130828|19138_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 931.69
//
Query:       MMETSP1174-20130828|19142_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 828.60
//
Query:       MMETSP1174-20130828|19143_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0096   13.8  10.2       0.18    9.7   0.5    3.3  3  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.3   9.1e-05      0.37      28      55 ..      15      42 ..      12      45 .. 0.85
   2 !    9.7   0.5   4.4e-05      0.18      32      57 ..      45      70 ..      43      82 .. 0.86
   3 ?    0.1   0.1     0.046   1.9e+02      30      49 ..     196     215 ..     195     234 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 9.1e-05
    TIGR02606 28 EVvRaaLRlleerEarleaLraaiqeGe 55
                 E   aa++  ee+Ear+++L+aa++e +
  MMETSP1174-20130828|19143_1 15 EACLAAMKSAEEEEARFNTLKAAVEERT 42
                 5566899999***************976 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.4e-05
    TIGR02606 32 aaLRlleerEarleaLraaiqeGeqs 57
                 aa+++ ee+Ear+++L+aa++e ++ 
  MMETSP1174-20130828|19143_1 45 AAMQAAEEEEARFNTLKAAVEERTRV 70
                 68999*****************9865 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.046
    TIGR02606  30 vRaaLRlleerEarleaLra 49 
                  +R++LR      +++ aLr+
  MMETSP1174-20130828|19143_1 196 LREGLRSVLTGWQKVTALRK 215
                  69999998888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 620.84
//
Query:       MMETSP1174-20130828|19145_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|19152_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 717.14
//
Query:       MMETSP1174-20130828|19148_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|19154_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1174-20130828|19155_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|19157_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|19158_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 195.98
//
Query:       MMETSP1174-20130828|19153_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1835.57
//
Query:       MMETSP1174-20130828|19159_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1174-20130828|19156_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 744.80
//
Query:       MMETSP1174-20130828|19160_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|19163_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-14   49.9   0.0    5.8e-14   49.8   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    0.00059   16.9   0.4      0.001   16.1   0.2    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0011   16.5   0.0     0.0011   16.4   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   4.2e-17   5.8e-14       2      91 ..       6      96 ..       5     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 4.2e-17
    TIGR01649  2 SkVvHvRnlpeevveadlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgnak.alsd 91
                 S+V+HvRnlp  v   +  +l ++fG +   + +++k qAlv ++++++A+ +V+ +t+ p+q++   + v +S s +l++ +  + +  d
  MMETSP1174-20130828|19163_1  6 SRVLHVRNLPPYVLKYEYEDLFQPFGVIEESVKIRNKDQALVQIDTIDAAERAVEAMTKDPPQLGTYRISVGFSHSAQLNMSHRGQgQSGD 96
                 9******************************************************************************988753323333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   7.5e-07     0.001     181     242 ..       9      65 ..       4     125 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.5e-07
    TIGR01628 181 lYvKnlddsvtedklrelFakfGeit.SaivkkdeknrkrgfafvnyekaedAkkAveelngk 242
                  l v+nl++ v + + ++lF++fG i  S++++  +k++    a v+ ++ ++A++Ave++   
  MMETSP1174-20130828|19163_1   9 LHVRNLPPYVLKYEYEDLFQPFGVIEeSVKIR--NKDQ----ALVQIDTIDAAERAVEAMTKD 65 
                  789********************997244443..4444....689**************9865 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.1e-07    0.0011      92     180 ..       9      91 ..       1     121 [. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.1e-07
    TIGR01661  92 lyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskall 180
                  l+v  lP  + + e e lf+pfG i  s      v+   k   +++ d  + a+ra+ a+    P+  t +i v f+ +   + s+  +
  MMETSP1174-20130828|19163_1   9 LHVRNLPPYVLKYEYEDLFQPFGVIEES------VKIRNKDQALVQIDTIDAAERAVEAMTKDPPQLGTYRISVGFSHSAQLNMSHRGQ 91 
                  88999******************88665......44455677899*******************************9987766665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 625.73
//
Query:       MMETSP1174-20130828|19162_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:01.03
# Mc/sec: 603.56
//
Query:       MMETSP1174-20130828|19164_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 621.45
//
Query:       MMETSP1174-20130828|19169_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1218.96
//
Query:       MMETSP1174-20130828|19171_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.3   0.0      0.037   10.7   0.0    1.2  1  TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01278  DPOR_BchB: light-independent protochlorophyllide reductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.1e-06     0.037     234     316 ..      36     113 ..      31     123 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.1e-06
    TIGR01278 234 tetPiGvnetlrfikeieallekaGldeelesfilddlsavsqvawfarsiDseslsgkravvfGDathavaltklladelGl 316
                  + t +G+++t+  ++ + ++ + aGl  +l++  l ++   + va fa  +  ++l  k+  v GD  + ++lt+l++  lGl
  MMETSP1174-20130828|19171_1  36 QLTRLGLQHTS--VSMVGDVANLAGLM-QLTHLYLSNTGVFGDVANFAGLVKLKELNFKNTKVSGDIVNLAGLTQLVH--LGL 113
                  56778999886..56677777888987.999999******************************************98..554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 711.04
//
Query:       MMETSP1174-20130828|19170_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1747.86
//
Query:       MMETSP1174-20130828|19176_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|19177_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|19175_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1235.22
//
Query:       MMETSP1174-20130828|19181_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1174-20130828|19183_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|19185_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1174-20130828|19189_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-18   63.0   0.0    2.2e-16   56.7   0.0    2.0  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    4.9e-15   52.2   0.0    6.3e-15   51.8   0.0    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    8.7e-15   51.7   0.0    1.1e-14   51.4   0.0    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    5.8e-13   45.4   0.0    1.9e-12   43.7   0.0    1.6  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.5e-12   44.3   0.1    2.4e-12   43.7   0.0    1.2  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    1.3e-07   28.0   0.0      2e-07   27.4   0.0    1.3  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    1.2e-05   20.9   0.0    1.5e-05   20.6   0.0    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.6e-05   21.3   0.0    1.9e-05   21.1   0.0    1.0  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
     0.0038   12.6   0.0      0.006   11.9   0.0    1.3  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
     0.0059   13.3   0.0      0.008   12.9   0.0    1.1  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
     0.0089   12.6   0.0      0.011   12.2   0.0    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
  ------ inclusion threshold ------
      0.015   10.8   0.0      0.026   10.0   0.0    1.4  2  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase


Domain annotation for each model (and alignments):
>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.004       1.4      33      64 ..       3      34 ..       1      39 [. 0.90
   2 !   56.7   0.0   6.4e-19   2.2e-16     131     243 ..      46     159 ..      40     163 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.004
    TIGR01106 33 lskglsearaaellardgpnaltppkttpeyv 64
                 l  gl++a++ e  ar gpn ++pp + p+++
  MMETSP1174-20130828|19189_1  3 LGVGLNRAQVIERKARFGPNVISPPLDLPKWL 34
                 66799*************************97 PP

  == domain 2    score: 56.7 bits;  conditional E-value: 6.4e-19
    TIGR01106 131 ilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlriisa.kglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstgdrtvlgr 243
                   ++ +k+++ + a v+rdg  l+i+a  + +gd+v +   dr+ ad+r+ ++  ++ v    ltg+  p  r+++  + + le+ n ++   ++v+g a+g+ + +g+ t l  
  MMETSP1174-20130828|19189_1  46 RMALYKKIIAESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTCsADFAVSHLCLTGDDTPLQRCVDKWRTEILESENTVLCGGKIVNGSATGVCIGVGESTALAE 159
                  58899********************************************8762689****************************************************998765 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.8e-17   6.3e-15     107     220 ..      46     161 ..      42     172 .. 0.90

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1.8e-17
    TIGR01522 107 slealnklvpaechliraGkeehvlasklvpGdlvelsvGdrvpadlrive.avdlsidesnltGettpvkkssea.iealaersniaymGtlvreGkgkGivvgtGsntefGavf 220
                   +   +k++ + ++++r G+  ++ a++l  Gd+v l + drv ad+r+   + d+ +    ltG++tp ++  +   +++ e +n+   G  + +G ++G+ +g G+ t++ +++
  MMETSP1174-20130828|19189_1  46 RMALYKKIIAESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTcSADFAVSHLCLTGDDTPLQRCVDKwRTEILESENTVLCGGKIVNGSATGVCIGVGESTALAELM 161
                  55566899999**************************************762689***************99876526899*****************************998765 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.2e-17   1.1e-14      52     168 ..      44     162 ..      41     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.2e-17
    TIGR01116  52 ekaiealkeleseealvlrdark....akdlvpGdivelavGdkvpadvrllelks.lkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirk 168
                  e+++   k++ +e+a vlrd+r+    a+ l +Gd+v la+ d+v+ad+r+++  +  +v++  ltG+ ++ ++ ++  +    ++ + +n +  G ++v+G a gv +  G +t++ ++ k
  MMETSP1174-20130828|19189_1  44 ERRMALYKKIIAESAEVLRDGRWlrieARSLTIGDVVRLAISDRVAADIRVSTCSAdFAVSHLCLTGDDTPLQRCVDKWR---TEILESENTVLCGGKIVNGSATGVCIGVGESTALAELMK 162
                  7888899*************996444489**********************998763799***********998776655...556667899***********************9988765 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.15        50      33      60 ..       6      33 ..       3      44 .. 0.76
   2 !   43.7   0.0   5.4e-15   1.9e-12     117     239 ..      48     162 ..      36     166 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.15
    TIGR01524 33 GltaaevterlkkyGenevaeekkspal 60
                 Gl+ a+v er++++G+n ++     p++
  MMETSP1174-20130828|19189_1  6 GLNRAQVIERKARFGPNVISPPLDLPKW 33
                 9****************98765554444 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 5.4e-15
    TIGR01524 117 dalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrvia.ardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslak 239
                     kk++ + a+vlr      ++ +  +    l  Gdv++la  d + ad+rv + + d+ ++   ltG+  p ++ + + ++   e+le en +l G ++v G a  v +  G st + +l k
  MMETSP1174-20130828|19189_1  48 ALYKKIIAESAEVLR------DGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTcSADFAVSHLCLTGDDTPLQRCVDKWRT---EILESENTVLCGGKIVNGSATGVCIGVGESTALAELMK 162
                  45699999*******......999*****************************75378******************9988887...9******************************9888865 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0     7e-15   2.4e-12      84     190 ..      48     159 ..      43     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 7e-15
    TIGR01647  84 eaLkkslapkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdk.lkvDqaaltGEslp....vekklgdiaysgsvvkkGEveavvvatGvntffGkaakLve 190
                  ++ kk +a++a+vlRdg+w ++ea++l +GDvv+l++ d v+aD+++ + +    v +  ltG+  p    v+k   +i  s  +v  G       atGv   +G++++L e
  MMETSP1174-20130828|19189_1  48 ALYKKIIAESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTCSAdFAVSHLCLTGDDTPlqrcVDKWRTEILESENTVLCGGKIVNGSATGVCIGVGESTALAE 159
                  55678899***************************************9865449***********99333344555566777777877777777778888777777777765 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   5.8e-10     2e-07     151     251 ..      51     163 ..      42     174 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.8e-10
    TIGR01517 151 ekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDg.vlisGlklkiDessltGesdpikk...........gkekLlsGtkvlegsgrmlvtavGvnsvtGkllte 251
                  +k  +++ +v+R+g+  +i+   +++GD+v+l + d v+aD  v     +  +    ltG++ p ++           +++ +l G k+++gs++++   vG+++   +l++ 
  MMETSP1174-20130828|19189_1  51 KKIIAESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIrVSTCSADFAVSHLCLTGDDTPLQRcvdkwrteileSENTVLCGGKIVNGSATGVCIGVGESTALAELMKD 163
                  555667789********************************523334456666777899*999987622222222222456689**********************9999986 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   4.3e-08   1.5e-05     106     223 ..      44     157 ..      36     166 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4.3e-08
    TIGR01523 106 ektmdslktlaspnahvirsskseaidskdlvpgdvvllkvgdvvpadlrlve.tknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqsei 223
                  e+ m   k++ +  a v+r+++   i+++ l  gdvv l + d v ad+r+   + +f      ltg+  p+ +  +        + + +  n       +v g a g++i  +  + +
  MMETSP1174-20130828|19189_1  44 ERRMALYKKIIAESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTcSADFAVSHLCLTGDDTPLQRCVDK-----WRTEILESENTVLCGGKIVNGSATGVCIGVGESTAL 157
                  5678888999999*************************************8652578999999********9876543.....345666777777888888888888888877766655 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.6e-08   1.9e-05      27      97 ..      50     121 ..      40     154 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.6e-08
    TIGR01494  27 lkdkelnskkvtvlreg.ekeisskdlvvGDivlvkkgekvpaDgvllsgsa..evdessLtGEsnpvekkeav 97 
                   k  ++ ++++ vlr+g + +i+++ l +GD+v+++  ++v+aD+++  +sa   v    LtG  +p ++  + 
  MMETSP1174-20130828|19189_1  50 YK--KIIAESAEVLRDGrWLRIEARSLTIGDVVRLAISDRVAADIRVSTCSAdfAVSHLCLTGDDTPLQRCVDK 121
                  33..36777777777654999*************************9888761155666689999999987665 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.2   3.9e+02     139     158 ..       6      25 ..       5      28 .. 0.89
   2 !   11.9   0.0   1.8e-05     0.006     229     292 ..      56     119 ..      40     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.2
    TIGR01657 139 GLtkgeiakrkelyGkneie 158
                  GL+++++ +rk+ +G n+i+
  MMETSP1174-20130828|19189_1   6 GLNRAQVIERKARFGPNVIS 25 
                  89999999*********997 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.8e-05
    TIGR01657 229 qsveViRekkeetiasdelvpgDivlisrleekllpcDavLlegscivnEsmltGEsvpvlKvp 292
                  +s eV+R++ +  i++  l +gD+v +  ++ ++  + +   +++  v    ltG+ +p+ ++ 
  MMETSP1174-20130828|19189_1  56 ESAEVLRDGRWLRIEARSLTIGDVVRLAISDRVAADIRVSTCSADFAVSHLCLTGDDTPLQRCV 119
                  56789***********************8888888888899999999***********998764 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.3e-05     0.008      50     115 ..      51     117 ..      44     123 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
    TIGR01525  50 lelapeealllkeddseeevaveelqvgDivkVkpGekipvDGeviegesevDesl..lTGEslpvek 115
                  ++  +e+a +l++ +   ++++++l++gD+v++   +++++D +v + ++ +  s+  lTG  +p+++
  MMETSP1174-20130828|19189_1  51 KKIIAESAEVLRD-GRWLRIEARSLTIGDVVRLAISDRVAADIRVSTCSADFAVSHlcLTGDDTPLQR 117
                  5667788999995.799*********************************998887336999999876 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.3e-05     0.011      63     110 ..      68     117 ..      45     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    TIGR01512  63 eVaveelkvgdvvvVkkGervPvDGevlsgessldesa..lTGEsvpvek 110
                  ++++++l++gdvv +   +rv++D +v + ++++  s+  lTG   p+++
  MMETSP1174-20130828|19189_1  68 RIEARSLTIGDVVRLAISDRVAADIRVSTCSADFAVSHlcLTGDDTPLQR 117
                  6899****************************999987336999999875 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   7.6e-05     0.026      74     123 ..      45      93 ..      38     105 .. 0.88
   2 ?   -3.2   0.0      0.77   2.6e+02     196     231 ..     123     157 ..     116     161 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.6e-05
    TIGR01652  74 rrrksDkevNnkkvevleesakfkeikwkdlkVGdivkvkkdeeiPaDll 123
                  rr+   k++  + +evl++ +++ +i+ ++l +Gd+v++   +++ aD+ 
  MMETSP1174-20130828|19189_1  45 RRMALYKKIIAESAEVLRD-GRWLRIEARSLTIGDVVRLAISDRVAADIR 93 
                  677777888889999**98.7***************************85 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.77
    TIGR01652 196 reeplsvdnvllrgctlrntkwvlgvVvytGhdtkl 231
                  r+e l  +n++l+g ++ n   ++gv +  G+ t l
  MMETSP1174-20130828|19189_1 123 RTEILESENTVLCGGKIVN-GSATGVCIGVGESTAL 157
                  567789999*****99999.6788888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 767.19
//
Query:       MMETSP1174-20130828|19192_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|19195_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|19197_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1174-20130828|19194_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   13.5   0.0        2.3    5.0   0.0    2.9  3  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0   0.00057       2.3      36      83 ..      56     104 ..      47     138 .. 0.73
   2 ?   -0.3   0.0     0.023        93      13      53 ..     167     208 ..     155     229 .. 0.55
   3 !    4.6   0.0   0.00076       3.1      53      80 ..     326     353 ..     285     367 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00057
    TIGR03866  36 tlkvGerPrGitlskdgkllyvc.asdsdavqvldaeteevlkelpsGe 83 
                  t+  G+r r   +    k+ +v+ +sd+ +++v dae+  +  +l+   
  MMETSP1174-20130828|19194_1  56 TVMSGHRERVTCVRAHPKFGLVAsSSDDSTIKVWDAESGMLEASLKGHS 104
                  788899999988888888877761568889********99999987543 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.023
    TIGR03866  13 iyvsnekdntisvidletlevvktlkvGerP..rGitlskdgk 53 
                    vs  +d+ti + d ++   ++tl+ G+r   r +++ k ++
  MMETSP1174-20130828|19194_1 167 RVVSCSRDKTIKIWDISSGYCINTLQ-GHRDwiRALAVCKHDN 208
                  45566666666666666666665554.3332124444444433 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.00076
    TIGR03866  53 kllyvcasdsdavqvldaeteevlkelp 80 
                  +  +++asd+ +v+v+d+e+++ l++l 
  MMETSP1174-20130828|19194_1 326 SKYLLSASDDRSVKVFDLESRRCLRTLE 353
                  4456789999999999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1470.74
//
Query:       MMETSP1174-20130828|19199_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1118.03
//
Query:       MMETSP1174-20130828|19203_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   58.9   0.0    1.5e-16   58.4   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   3.7e-20   1.5e-16       9     127 ..       2     127 ..       1     165 [. 0.74

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 3.7e-20
    TIGR00231   9 vGhvdvGKstLlnsllk..nk...isiteskp......gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.......d 127
                  +G + +GK+tLl+++++  n+   ++     p      +++ ++++  + +d   ++v ++D++Gq++ + i++ y++e++++++v+d +    ++ee++      ++++ +  gvp++l +nK+Dl +       +
  MMETSP1174-20130828|19203_1   2 LGLDMAGKTTLLEQMKGifNHpqpGI-----PperippTIGLNIAK--MNVDK--CRVIFWDLGGQVRMRSIWEKYYAEANGMIFVIDSADV-GRLEEAK-LAFDAVRRHDDLGGVPVMLLMNKQDLAGalmeediA 127
                  58889**********87323322223.....133333699999999..68888..**********************************998.*******.99999***********************75544331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 796.19
//
Query:       MMETSP1174-20130828|19206_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-14   49.0   0.0    6.8e-14   48.8   0.0    1.0  1  TIGR00930 2a30: K-Cl cotransporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   1.6e-17   6.8e-14     601     678 ..       2      79 ..       1      85 [. 0.97

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.6e-17
    TIGR00930 601 gkgltivgsvlegklkekvkeakaaeekikkllekekvkafyevvvaeklreGvraliqaaGlGrlkpntlvlgykkd 678
                  gkglti++ v++g++++k+  + +  ++ ++++ ++ + +f e+v a++  eG + l+ a+GlG l+pnt+ +g++ +
  MMETSP1174-20130828|19206_1   2 GKGLTIFAGVTQGEFRDKAAFIWQGRRNLAQVMAEKEIDGFSEMVCATSELEGQKFLLHASGLGALRPNTVAIGWPDN 79 
                  79**************************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1174-20130828|19204_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.8   0.0     0.0021   15.6   0.0    1.3  1  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.2e-07    0.0021     102     150 ..       1      49 [.       1      83 [. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.2e-07
    TIGR03340 102 lvaiaatlllgeeLsalaWlGillivlGllvlglskkaqsrrkalkwal 150
                  l++  ++l++ge+L+  +W+G+ + + Gl +    + +++   ++k ++
  MMETSP1174-20130828|19204_1   1 LLVALSMLMYGEKLTLANWVGFFVALTGLGIFKVLRSHNKPESKVKLTV 49 
                  56667899*********************99998888887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|19210_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 928.05
//
Query:       MMETSP1174-20130828|19211_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1174-20130828|19212_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 403.97
//
Query:       MMETSP1174-20130828|19201_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0077   13.5   0.2      0.015   12.6   0.1    1.4  1  TIGR02830 spore_III_AG: stage III sporulation protein AG
     0.0096   13.4   0.1      0.016   12.7   0.1    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
  ------ inclusion threshold ------
      0.011   13.4   0.0      0.021   12.5   0.0    1.4  1  TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit
      0.043   10.4   2.7      0.057   10.0   1.9    1.1  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02830  spore_III_AG: stage III sporulation protein AG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.5e-05     0.015       3      52 ..      18      71 ..      16      99 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.5e-05
    TIGR02830  3 lkylvvllliglllllvsslfssseeee......eseeeekekeekeevksekqke 52
                 l+++++++l+++ l l+s+ ++++++++          e+++k++ ee +++++k+
  MMETSP1174-20130828|19201_1 18 LALFLIVGLLVVSLQLWSNSIENKKKTAeraaraA--IEDNKKAKAEERAAKAEKN 71
                 56899****************99999886766431..2222222222222222222 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   1.5e-05     0.016       4      64 ..      20      74 ..      19     109 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.5e-05
    TIGR03593  4 lilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqsaaaaaaasaaaaasadapsaa 64
                 l+l+v L++v+l lw++  +++k+++++ + aa + +++ +a   ++ a   a+a++++a+
  MMETSP1174-20130828|19201_1 20 LFLIVGLLVVSLQLWSNSIENKKKTAERAARAAIEDNKKAKA---EERA---AKAEKNAAF 74
                 699******************999877666666665553222...2222...222222222 PP

>> TIGR00240  ATCase_reg: aspartate carbamoyltransferase, regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05     0.021      63     120 ..     187     247 ..     163     265 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
    TIGR00240  63 lkeeevdkialiaPdatiniirdyevve...klkvslpeevegvlkcpnsncisnkekves 120
                  +++ ++ +i      +t+ ++++++v +   k k+ ++++ve  + c  ++cisn  +v  
  MMETSP1174-20130828|19201_1 187 VSKLDLIRIGWWIQVVTLGRMQEGKVAKtifKRKPTPMQKVEIGIYCGTDECISNGPEVXR 247
                  344444444445567899999999997655589**********************655544 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.9   5.5e-05     0.057      34     117 ..      39     121 ..      28     141 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.5e-05
    TIGR03240  34 aaqvekavkaarkafpawarlsleeriavvkrfaellee.ekeelaeviaketgkplweartevasmvakvaisikayeertGek 117
                  +++ ++a +aar+a ++  ++++eer+a  ++ a+ l++ e+e+++++i  e +k+    r e   + ak+a s+k  +   Ge+
  MMETSP1174-20130828|19201_1  39 ENKKKTAERAARAAIEDNKKAKAEERAAKAEKNAAFLAKiEQERYTRAIDLELAKAA--ERRERIELEAKLAPSLKGMKINEGES 121
                  44557899***************************997647899**********986..34455567778888888887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 1002.56
//
Query:       MMETSP1174-20130828|19205_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   53.7   0.1    5.4e-13   46.1   0.0    2.1  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    5.4e-15   53.3   0.0    1.1e-13   49.0   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    4.4e-11   40.3   0.0    1.4e-10   38.6   0.0    1.7  2  TIGR02053 MerA: mercuric reductase
    1.4e-09   34.9   0.0    2.2e-09   34.2   0.0    1.3  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.5e-09   34.9   0.0    1.7e-08   31.5   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.2e-09   32.9   0.0    1.1e-08   32.0   0.0    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.8e-07   27.5   0.0    7.3e-07   26.5   0.0    1.4  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      2e-05   21.5   0.0    3.5e-05   20.7   0.0    1.4  1  TIGR03452 mycothione_red: mycothione reductase
    9.5e-05   18.9   0.0    0.00016   18.2   0.0    1.2  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
     0.0047   13.6   0.1     0.0078   12.9   0.1    1.4  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0062   13.2   0.0     0.0093   12.6   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
  ------ inclusion threshold ------
       0.04   11.6   0.0       0.11   10.1   0.0    1.7  2  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF


Domain annotation for each model (and alignments):
>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.6e-15   5.4e-13       2     286 ..      81     385 ..      80     401 .. 0.76
   2 !    5.7   0.0    0.0025      0.86     727     794 .]     456     519 ..     447     519 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.6e-15
    TIGR02374   2 vlvGnGmvGvrlieevlkkddkdefeitvfgeepdaaydrv....lLss.vlq...eadle.dltLn.skdyyekhgikllvnerv..ikidreeksvitdagrtlsyDkLilatGsyp...filPipGaDk.kgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlG....ldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkesvekaerlrfkDGssleadlvvla.aGirPrdeLaaea.Glkvndr.rGiivndsmqtsdPdiyavGecaehngrvyG 286
                  v+vG G   + +ie ++ ++   + +i +++e++++ +        Lss +l+   e+ ++ + +L  + d  +   ++ll++ +   +++d e ks++ d g  +sy+k ++a   +p   ++l     +   +v +  t++D   l   +  +++ +v+GgG+LG e a+aL + G    l+v  + +    +a+ l +  ++ +q+ +   G+    ++   +i k+   ++ r+ ++D  +  +d  vla + + P++ +a ++ Gl++++  +Gi+vn  +++    +ya G  a++ +++ G
  MMETSP1174-20130828|19205_1  81 VIVGGGSTAHAAIEGIMMTN--PKADILMLSEDSKVHHIDAeleaNLSSdFLDaynEWRRHlNPSLDtEPDAVGSVPLTLLLQRTQdkLHLDVEGKSLLLDDGTSVSYNKCLIASCGTPkefYVLDETSFEAaGSVLTMNTLKDFARLDELCSSVQNVTVVGGGFLGTELAVALARRGarsgLKVAHMYVEDGPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQADGERLRMTLADDWEWMTDTAVLAsTHVDPKNGIAEDSpGLELDPSsGGIVVNSQLEAL-NGVYAAGATASYPDMALG 385
                  78888888888888888888..56678888887766554330011344313332212222212345413477788888898887652267899*****************9999877664557777666555156899************************************876511116666666678899********************************999988889999999999888887775278********9766****9853889999988876.57*********9988877 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0025
    TIGR02374 727 yidrflqyyietadkLertaaWlerlgldhvrevliedelglraeleeelqrtlsvvkdewkevledk 794
                   i+r +++y++t++k+ ++  W  +  l+ vr+++  ++       +++lq+ ls+  + w+ v+e+k
  MMETSP1174-20130828|19205_1 456 SIERGVIFYKNTQNKIVGALCWNASDTLERVRDIMQHKHT----ADQDALQEYLSLAPESWVTVVETK 519
                  588999***************************9998887....335788999999999999999876 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.052        18     134     159 ..      66      94 ..      34     138 .. 0.73
   2 !   49.0   0.0   3.2e-16   1.1e-13      78     284 ..     168     380 ..     162     435 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.052
    TIGR03169 134 ellekakaseetkslavvGgGa...agvE 159
                  + ++ a+ +++ +++++vGgG    a++E
  MMETSP1174-20130828|19205_1  66 ARRNTARPQKNFHEFVIVGGGStahAAIE 94 
                  44455555666679999999962224555 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 3.2e-16
    TIGR03169  78 gldleerkvllaereeisydvlsldvGsttalseve..gaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevede.......alllaegetleadavllatgakapawLaes..glslde.dGflavkktLqslshpevFaaGDcavik 284
                  +ld+e + +ll+++ ++sy+ + +   +t++   v   +  ++a +v  +++l + + +l e     ++ ++++vvGgG+ g Ela+al++r +++glk   +++ +++ l ++l++ + k v++l+++ g+e++ ++  t+++++        +l ++ e+++  avl++t + +++ +ae   gl+ld+ +G + v+++L+    + v+aaG  a+  
  MMETSP1174-20130828|19205_1 168 HLDVEGKSLLLDDGTSVSYNKCLIASCGTPKEFYVLdeTSFEAAGSVLTMNTLKD-FARLDEL---CSSVQNVTVVGGGFLGTELAVALARRGARSGLK-VAHMYvEDGPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQadgerlrMTLADDWEWMTDTAVLASTHVDPKNGIAEDspGLELDPsSGGIVVNSQLEA--LNGVYAAGATASYP 380
                  79*****************988776655554333322233334444444433333.3333333...466779**************************9.344446999999*******************************988999999444446667777888999******9998864349***9637*******9998..56899999887765 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56   1.9e+02       2      28 ..      79     107 ..      78     111 .. 0.67
   2 !   38.6   0.0   4.1e-13   1.4e-10     116     311 ..     173     380 ..     164     409 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.56
    TIGR02053   2 dlviiGsGaaafaaa..ikaaelgakvvl 28 
                  ++vi+G+G++a aa+  i  ++  a +++
  MMETSP1174-20130828|19205_1  79 EFVIVGGGSTAHAAIegIMMTNPKADILM 107
                  579*******9998633444444455555 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 4.1e-13
    TIGR02053 116 ektvkvdlgkevvgakrvliAtGarpavPeipGLkeae.........yltseelleldkip...eslvviGggaiavElaqlfar....lGsevtllqrse.rllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvkld.erGeilvdeklrtsnpkiyAAGDvikgl 311
                  +k + +d+g+ v ++k +liA    p+   +  L+e++         + t +++  ld++    +++ v+Ggg +++Ela ++ar    +G++v+ ++  +  l+ +  + +s+ v++l++  Gve v +  +++++k+  ++++++++    + e   d+ ++A+      +g+  +  g +ld ++G+i+v+++l++  +++yAAG   + +
  MMETSP1174-20130828|19205_1 173 GKSLLLDDGTSVSYNK-CLIASCGTPKEFYV--LDETSfeaagsvltMNTLKDFARLDELCssvQNVTVVGGGFLGTELAVALARrgarSGLKVAHMYVEDgPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQ-ADGERLRMTLA-DDWEWMTDTAVLASTHVDPKNGIAEDSPGLELDpSSGGIVVNSQLEAL-NGVYAAGATASYP 380
                  5667788888888888.99999888886665..66666667778544444455666777663336789************9997612115677766655541677888889*************************996.57777888886.4566667777777777777788**********9678**********98.79*****876655 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.5e-12   2.2e-09     161     301 ..     225     375 ..     165     381 .. 0.73

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 6.5e-12
    TIGR01424 161 dletlP...ksilvvGgGyiavefagifr..G..lGvkvtllyrgekilrg.fdddvraelaeeleerGirillktvlksiekvddG..lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelnda.gaiavdeysrtsvpsiyavGd 301
                   l++l    +++ vvGgG++++e+a  ++  G   G kv  +y ++ +l + +   + +++++ ++  G++ ++++  + i+k++dG  l++tl++d e ++d+ +la   v   +g++ ++ G+el+ + g i+v+     + +++ya G 
  MMETSP1174-20130828|19205_1 225 RLDELCssvQNVTVVGGGFLGTELAVALArrGarSGLKVAHMYVEDGPLARhLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQADGerLRMTLADDWEWMTDTAVLASTHVDPKNGIAEDSPGLELDPSsGGIVVNSQ-LEALNGVYAAGA 375
                  4454441116789**********998775114224678999*****99965267899******************************98889999*****************99*************976377877754.446788888875 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.095        32       3      38 ..      81     116 ..      72     133 .. 0.65
   2 !   31.5   0.0   4.9e-11   1.7e-08     119     285 ..     204     379 ..     172     391 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.095
    TIGR03385   3 vivGgvaaGasaAsrvrRLkkesdiivfekteivsf 38 
                  vivGg+++  +a   +   +++ di ++ ++  v +
  MMETSP1174-20130828|19205_1  81 VIVGGGSTAHAAIEGIMMTNPKADILMLSEDSKVHH 116
                  666666666666666666666666666666666555 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 4.9e-11
    TIGR03385 119 eiegi.eldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkerg....kevtliersekilnkllDeeiakiveeelekkeielrlneevksve...geekve.vltsgkvyqaDlvila.vGvkPnselikss.qlklg.kkGaikvnekfqtsveniyaiGDvaes 285
                  +  +   +  v t++ l+d  +++++   ++v++v+v+GgG++g e++ al +rg    ++v  +  ++  l + l + ++k v+  ++  ++e + ++  + ++   + e+   +l +  +  +D  +la + v+P+  ++++s +l+l+ + G i+vn +++   + +ya+G +a  
  MMETSP1174-20130828|19205_1 204 DETSFeAAGSVLTMNTLKDFARLDELC--SSVQNVTVVGGGFLGTELAVALARRGarsgLKVAHMYVEDGPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKkqaDGERLRmTLADDWEWMTDTAVLAsTHVDPKNGIAEDSpGLELDpSSGGIVVNSQLEA-LNGVYAAGATASY 379
                  33444235678999************9..99*********************9982222455555555666677777777777777777777776666555555411144555568999999999987765389********997689998468********995.899*****98866 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.2e-11   1.1e-08     128     315 ..     182     383 ..     162     409 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 3.2e-11
    TIGR01350 128 kkleakniiiAtGseprelplk....leedek..vvitseealelke...vpeslvivGgGviGvEfasifaklGv....kvtvielldr.ilpaldaevskvlkkklkkkgvkiltnakvtevekeedevvveakkk.evetleaekvLvavGrkpnleelgleklgveld.ergaikvdeelrtnvpgiyaiGDvigklmLA 315
                  +++++++++iA+  +p+e+ +     +e++++  ++ t ++  +l+e     +++ +vGgG +G+E+a+++a+ G+    kv+ + + d  +   l + +sk ++k +++ gv+ + ++  t ++k++d  ++++    + e+++  +vL +  + p+   +  ++ g+eld + g i+v+++l+  ++g+ya G  ++ + +A
  MMETSP1174-20130828|19205_1 182 TSVSYNKCLIASCGTPKEFYVLdetsFEAAGSvlTMNTLKDFARLDElcsSVQNVTVVGGGFLGTELAVALARRGArsglKVAHMYVEDGpLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQADGERLRMTLAdDWEWMTDTAVLASTHVDPKNG-IAEDSPGLELDpSSGGIVVNSQLEA-LNGVYAAGATASYPDMA 383
                  5789999*********9999987878777665333334445555555111568899***************8765422227877777776256678999***********************99998888775555544689***************987.8899999999944699*******96.89******887776665 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.1e-09   7.3e-07     128     303 ..     184     375 ..     163     383 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.1e-09
    TIGR01421 128 ytakhiliatGgkpsip.......eniPGaelglds.dgffaleelP...krvvivGaGyiavelaGvlhglGsktdlvirr....ervl.rsfdelisekvveelekaglevhklskvvkvektveg.klvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGd 303
                  ++ ++ lia+ g+p+          +  G  l++++ ++f +l+el    ++v +vG G+++ ela  l   G+++ l + +    + +l r++  ++s++v + ++  g+e   ++  ++++k+++g +l +tl d  e   +d+ + a   +  +++++ +  g++ld     +v + q  + +g+ya G 
  MMETSP1174-20130828|19205_1 184 VSYNKCLIASCGTPKEFyvldetsFEAAGSVLTMNTlKDFARLDELCssvQNVTVVGGGFLGTELAVALARRGARSGLKVAHmyveDGPLaRHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQADGeRLRMTLADDWEW-MTDTAVLASTHVDPKNGIAEDSPGLELDPSSGGIVVNSQLEALNGVYAAGA 375
                  666667777777776543333222244566666544379999**9972224578****************999987776654222255555999**********************************6677777777555.5566666666666789************88777777889999******996 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     1e-07   3.5e-05     120     306 ..     174     378 ..     158     384 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1e-07
    TIGR03452 120 ktlrtedgeeitadqvviaaGsrpvipeaiae.......sgvryytnedimrlpelpes...lvivGgGyialefahvfsalGtk....vtlv.arsekllrkldediserftel.akkkfdvrlgrnvtaaeqdddg..vtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvss 306
                  k l  +dg +++ ++ +ia+ + p    ++ e       s  + +t +d  rl+el  s   + +vGgG++  e+a  +   G++    v+ + +    l r+l   +s+++++l ++  +++ +++  t+ ++++dg  + ++l d  +  +d+ ++a   v+  + +  ++ G+e+d     +v + q  + +gv+a G  +s
  MMETSP1174-20130828|19205_1 174 KSLLLDDGTSVSYNKCLIASCGTPKEFYVLDEtsfeaagSVLTMNTLKDFARLDELCSSvqnVTVVGGGFLGTELAVALARRGARsglkVAHMyVEDGPLARHLPRYLSKHVQKLiTAIGVETVAQQLCTDIKKQADGerLRMTLADDWEWMTDTAVLASTHVDPKNGIAEDSPGLELDPSSGGIVVNSQLEALNGVYAAGATAS 378
                  6677888888888888888887775444443311111113457788999******986522278************9998777651111443313344588999888888877752455566666665665555555444999***********************************987777777789999******998766 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.6e-07   0.00016     187     325 ..     233     374 ..     213     381 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.6e-07
    TIGR01423 187 pkrvltvgggyisvefagifnaykavgg.kvdlayrnd.milrgfdselrkeltkqlvangidvrtnenpakveknadgsk.hvvfesgkeldvdvvmlaigrlprsqtlqldkvgvela.dkgaikvdeysktnvdniyaig 325
                   + v +vggg++  e+a  +    a+ g kv   y +d ++ r +   l k++ k ++a g++  +++  + ++k+adg +  +++    e   d  +la   +   + +  d  g+el    g i v++     ++ +ya g
  MMETSP1174-20130828|19205_1 233 VQNVTVVGGGFLGTELAVALARRGARSGlKVAHMYVEDgPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIKKQADGERlRMTLADDWEWMTDTAVLASTHVDPKNGIAEDSPGLELDpSSGGIVVNSQ-LEALNGVYAAG 374
                  467889***********9999988886659*99998774788*************************************9945788888999999999999999888888889999988624566666543.33455666665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.3e-05    0.0078       2      33 ..     236     270 ..     235     309 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.3e-05
    TIGR01988   2 ivIvGgGlvGlalAlaLassa...dlkvalveaka 33 
                  + +vGgG  G+ lA+aLa+++   +lkva++  ++
  MMETSP1174-20130828|19205_1 236 VTVVGGGFLGTELAVALARRGarsGLKVAHMYVED 270
                  88****************99988878887765543 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.7e-05    0.0093       1      73 [.     235     306 ..     235     309 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-05
    TIGR01984   1 dviivGgglvGlslAlaLsrks...klkialieaksaeaakssfdarslalsagskqileklgiweklekeatpik 73 
                  +v +vGgg +G+ lA+aL+r +    lk+a +      +  +   + +  ls++ +++++++g++   ++  t+ik
  MMETSP1174-20130828|19205_1 235 NVTVVGGGFLGTELAVALARRGarsGLKVAHMY----VEDGPLARHLPRYLSKHVQKLITAIGVETVAQQLCTDIK 306
                  689******************965544544332....222233344555688888888888888888888888876 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.1   1.8e+03     153     181 ..      69      97 ..      65     109 .. 0.62
   2 ?   10.1   0.0   0.00033      0.11      23      77 ..     235     291 ..     222     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.1
    TIGR02354 153 nsiktrkiakrfyvvGdgkaeaksGrgll 181
                  n+ + +k  ++f +vG g +     +g++
  MMETSP1174-20130828|19205_1  69 NTARPQKNFHEFVIVGGGSTAHAAIEGIM 97 
                  56667777788888888765544433333 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00033
    TIGR02354  23 svaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrq..qykvsdvGkkkte 77 
                  +v+++G G lG+++a++lar G +    v +  ve   l r   +y  ++v k  t 
  MMETSP1174-20130828|19205_1 235 NVTVVGGGFLGTELAVALARRGARSGLKVAHMYVEDGPLARHlpRYLSKHVQKLITA 291
                  688999999**************9999999999999999997446777887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 1264.70
//
Query:       MMETSP1174-20130828|19215_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 843.79
//
Query:       MMETSP1174-20130828|19218_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|19220_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 787.93
//
Query:       MMETSP1174-20130828|19225_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 391.57
//
Query:       MMETSP1174-20130828|19224_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    7.6   3.5       0.33    7.1   2.4    1.2  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.4   8.1e-05      0.33     383     545 ..     161     333 ..     101     386 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 8.1e-05
    TIGR00926 383 dvkvevlsdsrkvalvedllskeekesksgieskesskkp...ngddeldidlsadglagevs.klkkevelekkkskvllvsqdglklyevaaktekakt...ekGelsirlvstlnke...ggaialskeesesvednlsvdksekaklyvlepavnleeedkkksatlea 545
                  +++++v  ++++    e  +  +++++ +  ++ ++s +        ++d++++ + +       ++ke + +    kv   +++ +++   ++++e +k+   e+G++++  + +       +g++++++e+++ +  + +  +++   +   e + +  + d + +atl  
  MMETSP1174-20130828|19224_1 161 QCRIKVAEQNQRAEIAEAEYDAQSHTVVARQQTIKQSADCdvkMRRAQIDTEIARERAIARQAgVIEKESQQKLVVVKVAEQQEERTRIEIRIEEEEAKKNamiEQGKVGVAEIDARRIAviaAGKVKVAEETARMIGVEAQGRSTAELVVAENEAKAEIASADGQAKATLAV 333
                  45665555555544333333333333222222222222221123344444444444333322202222222222222222222222222222222221111111334444432222222233345555555555555555555555555555555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       398  (0.0970258); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1886.67
//
Query:       MMETSP1174-20130828|19227_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 760.08
//
Query:       MMETSP1174-20130828|19223_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1651.75
//
Query:       MMETSP1174-20130828|19230_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-14   49.3  12.5    6.1e-06   22.7   0.0    3.2  3  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-09   6.1e-06     315     414 ..      35     138 ..      20     162 .. 0.85
   2 !   21.5   2.1   3.4e-09   1.4e-05     213     335 ..     199     324 ..     192     326 .. 0.73
   3 !   10.5   1.0   7.3e-06      0.03     361     433 ..     325     401 ..     323     406 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.5e-09
    TIGR00811 315 gfmvgrqltvtlcffiiarvttldievgvdd...nifgvsdgiqeffn.lgflgaiittilasiawqlvasafpiaflsnpvvyivlrivllieatgicagawf 414
                   f++grql +t  +f ++ +t +  +    d     fg+   +  f++  g+ g++i   +  i+ ql+a++ p+  +  p vy ++ + l++e tg+   +w 
  MMETSP1174-20130828|19230_1  35 RFLLGRQLLLTGFVFAVSELTVIGSDTSSCDcakRAFGLPVEVCSFIEsTGLGGSLIVLAFGQITPQLIAASHPVYHFGLPGVYELVSLALMVEYTGVLHLSWS 138
                  599******************999888765522268**********97257778999999*************************************9987774 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 3.4e-09
    TIGR00811 213 prsavqnlfhwgrvvfslgvlcfalavtle.alfkgkttmwefipngva...vvlfvllmslvgllegmqiaffavakipkaerg.dhpfarktcellfkgngrnlpgfmvgrqltvtlcffiiarvt 335
                   rs++  +f  g+ v+ + v+  +l ++l   l+ g  + w+    g +   +v +++l+ l+g+legm +a++a+ k p a      p      + l+  +g  +  f++grq  v +  f++ r+t
  MMETSP1174-20130828|19230_1 199 GRSSLGLVFRTGQYVVGVLVFGASLYLSLRqILVGGSDASWRRRVGGHSyllIVALLVLLYLMGVLEGMMLAVLALEKAPAAAFTaTAPCVVALQKQLV--DGDVVRRFLLGRQCMVVVMDFLVERLT 324
                  5777888899998776555555567777762567788999*9998886622255556677899*****************9975413444444444444..5678999****************9998 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 7.3e-06
    TIGR00811 361 gflgaiittilasiawqlvasafpiaflsnpvvyivlrivllieatgicagawflg....mihkkvagfqldevyvg 433
                  g++ga++  +++    ql++s  p+ +++ p    ++   ll+eatg+    w++     +i ++   +++d   vg
  MMETSP1174-20130828|19230_1 325 GVIGAVVVVVVSQALPQLISSRNPLFWVTVPGTLWIFHTALLVEATGLTHFGWLIAncfmLIGRHCGALREDHFSVG 401
                  8899**9999999999***************999999***********99999876222234455555556655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 1902.46
//
Query:       MMETSP1174-20130828|19240_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-12   43.1  12.7    2.9e-10   38.2   4.8    2.0  2  TIGR00861 MIP: MIP family channel proteins


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   1.0   6.5e-06     0.027     130     170 ..       2      37 ..       1      39 [. 0.81
   2 !   38.2   4.8     7e-14   2.9e-10      37     101 ..      29      93 ..      21      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.5e-06
    TIGR00861 130 qalvvefiltaiLvlvilaltdkrealssgglaplaiGllv 170
                  +al++ef++t++L+l++ ++++ ++a      ap+aiG ++
  MMETSP1174-20130828|19240_1   2 AALLMEFVGTFMLCLTVAGAAELSTA-----NAPIAIGGIL 37 
                  6899***************9854444.....6899998665 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 7e-14
    TIGR00861  37 valafglavallvyavggiSGahlNPAvTlallvlrkfplkkvvvYivaQliGailgaallyllt 101
                    +a g  ++ l+ya +++SGa  NPAv++al+++++++  k  +Yi  Ql ++++++ +  +++
  MMETSP1174-20130828|19240_1  29 APIAIGGILMCLIYAGAHVSGANYNPAVSFALFLTNNLTFAKTAMYIGVQLGASLVAGYVGVVMV 93 
                  568999********************************************999988887655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|19242_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.8   0.0      0.049   11.2   0.0    1.2  1  TIGR00537 hemK_rel_arch: putative methylase
      0.038   11.2   0.0      0.052   10.8   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.4e-05     0.049      17      48 ..     269     300 ..     262     318 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.4e-05
    TIGR00537  17 elknddvleiGaGtGlvairlkekgkkivatd 48 
                    k+++v+e+G+G Gl  i +++ g+ ++ td
  MMETSP1174-20130828|19242_1 269 PAKPHRVIELGSGCGLTGIVASRLGAEVTLTD 300
                  57999*********************999988 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.5e-05     0.052     146     185 ..     257     297 ..     243     320 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.5e-05
    TIGR00406 146 tslCl.ellesldlkdkkviDvGcGSGiLsiaalklgaakv 185
                  t lC  e  +++  k ++vi++G+G G+ +i a +lga+  
  MMETSP1174-20130828|19242_1 257 TPLCTtEEDDDRPAKPHRVIELGSGCGLTGIVASRLGAEVT 297
                  5677525667788889*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|19239_1  [L=1624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.17s 00:00:01.07 Elapsed: 00:00:00.65
# Mc/sec: 3297.70
//
Query:       MMETSP1174-20130828|19246_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1174-20130828|19248_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 1083.70
//
Query:       MMETSP1174-20130828|19244_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1942.13
//
Query:       MMETSP1174-20130828|19245_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1301.04
//
Query:       MMETSP1174-20130828|19250_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1174-20130828|19253_1  [L=1185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.16s 00:00:00.84 Elapsed: 00:00:01.13
# Mc/sec: 1371.99
//
Query:       MMETSP1174-20130828|19255_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1021.97
//
Query:       MMETSP1174-20130828|19252_1  [L=1563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-05   19.7   8.0    0.00017   18.8   5.6    1.4  1  TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C


Domain annotation for each model (and alignments):
>> TIGR03122  one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   5.6   4.1e-08   0.00017      83     187 ..    1366    1477 ..    1328    1518 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.1e-08
    TIGR03122   83 ivvegdvgahvGaemkgGkivveg.....nadswlgaemkgGeievkGnag...dyvGsayrgekrGmsgGkiiveGnagdelGelmrrGeiliegnagilagaemngGtiav 187 
                   + vegd ++ vG +++gGki v       + +  +g ++  G++ + G +    ++ G+a +  ++  sg +++veG  gd+  e+m++G+++i g++g   +a m+gG+  v
  MMETSP1174-20130828|19252_1 1366 LDVEGDSNDGVGKCLSGGKIAVRPgpelrDQNFIAGNNVVVGNVCLYGATSgvaYFSGTAGERFAVRNSGANVVVEG-VGDHGCEYMTGGRVVILGDTGRNFAAGMSGGIAYV 1477
                   579*******************8712221334457888888888888876422145555555555566899999999.588889*************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.16s 00:00:01.02 Elapsed: 00:00:00.75
# Mc/sec: 2750.65
//
Query:       MMETSP1174-20130828|19257_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1611.66
//
Query:       MMETSP1174-20130828|19260_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 349.59
//
Query:       MMETSP1174-20130828|19259_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 831.17
//
Query:       MMETSP1174-20130828|19264_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|19270_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074   11.1   1.7        2.4    6.2   0.1    2.4  2  TIGR00028 Mtu_PIN_fam: Mycobacterium tuberculosis PIN domain family


Domain annotation for each model (and alignments):
>> TIGR00028  Mtu_PIN_fam: Mycobacterium tuberculosis PIN domain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1   0.00059       2.4      21      43 ..       2      25 ..       1      63 [. 0.72
   2 ?    4.4   0.1    0.0022       8.9      16      35 ..      68      88 ..      60      89 .] 0.75

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00059
    TIGR00028 21 Hraarawldrllaggdi.atcplt 43
                 H++a +w+++++++gd+ a c l+
  MMETSP1174-20130828|19270_1  2 HARAVEWFMKAASQGDPnAQCSLA 25
                 *************99972344444 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0022
    TIGR00028 16 rdhv.hHraarawldrllagg 35
                 r+ + +H++a +w+ +++++g
  MMETSP1174-20130828|19270_1 68 RGVPqDHARAVEWWRKAANQG 88
                 555426**********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 367.09
//
Query:       MMETSP1174-20130828|19269_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1174-20130828|19273_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|19274_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 559.95
//
Query:       MMETSP1174-20130828|19275_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 780.94
//
Query:       MMETSP1174-20130828|19277_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 523.24
//
Query:       MMETSP1174-20130828|19283_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-08   29.3   0.0    5.7e-08   29.1   0.0    1.0  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    5.5e-05   20.1   0.0    6.9e-05   19.8   0.0    1.1  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
     0.0015   15.5   0.0     0.0017   15.2   0.0    1.1  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   4.2e-11   5.7e-08     621     689 ..       1      80 [.       1      94 [. 0.81

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 4.2e-11
    TIGR02956 621 GiaeeeqetlFkaftqaegrkksgG.......TGLGLAiskrlveamdgelsveSel....gkGScFafelplergkkae 689
                  Gi +e    lFk f+++e+  + +G        GLGL i++rlv+  +g++sv S        G cF f+l +   ++ +
  MMETSP1174-20130828|19283_1   1 GISPEYLPRLFKNFSTLENATQHQGrdewkssSGLGLMIAQRLVQQQGGNISVRSPWsldgSPGTCFYFTLSFLDQHHCA 80 
                  89999*************988888755555557*********************96521215699******987655554 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     5e-08   6.9e-05     396     446 ..       1      56 [.       1      62 [. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 5e-08
    TIGR01386 396 gipeeelsrlFdRFYRvdaa.....rsnseegtGLGLaIvrsiveaHgGeveaesa 446
                  gi +e+l+rlF  F   ++a     r + ++++GLGL I + +v+  gG++++ s+
  MMETSP1174-20130828|19283_1   1 GISPEYLPRLFKNFSTLENAtqhqgRDEWKSSSGLGLMIAQRLVQQQGGNISVRSP 56 
                  699***********998877222224445689*********************985 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06    0.0017     272     330 ..       1      68 [.       1      71 [. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
    TIGR02966 272 GIaaehlprltERFYRvdksrsre.....tgGtGLGLaIvkHvlerheaeLeieSelg....kGstFs 330
                  GI++e lprl+  F   +++  ++     ++ +GLGL I +  +++  ++++++S +      G++F 
  MMETSP1174-20130828|19283_1   1 GISPEYLPRLFKNFSTLENATQHQgrdewKSSSGLGLMIAQRLVQQQGGNISVRSPWSldgsPGTCFY 68 
                  9***************9987654432233789**********************97642111455665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|19287_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|19286_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|19289_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|19285_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2077.98
//
Query:       MMETSP1174-20130828|19291_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-28   96.6   0.9    3.8e-14   49.6   0.2    3.0  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    7.2e-13   46.1   0.3    8.2e-12   42.6   0.1    2.0  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    9.8e-13   45.7   0.3    2.8e-12   44.3   0.0    1.8  2  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    7.5e-12   42.8   0.1    1.3e-08   32.1   0.0    2.2  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    1.3e-07   28.4   0.0    1.7e-05   21.4   0.0    2.2  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    4.1e-07   27.7   0.0    6.9e-07   27.0   0.0    1.3  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    5.1e-06   23.3   0.1    8.1e-06   22.7   0.1    1.3  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)
    5.4e-05   20.0   0.0    9.2e-05   19.3   0.0    1.3  1  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
    0.00019   18.6   0.1    0.00038   17.6   0.1    1.6  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
     0.0014   14.8   0.1     0.0021   14.2   0.1    1.1  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.2   9.2e-17   3.8e-14     453     626 ..      32     217 ..      24     235 .. 0.77
   2 !   11.1   0.0     4e-05     0.016     645     687 ..     264     305 ..     246     323 .. 0.87
   3 !   32.9   0.0     1e-11   4.1e-09     701     818 ..     404     522 ..     366     528 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 9.2e-17
    TIGR02956 453 AraeAeeAnrAKS...aFLAtmSHEiRTPlnGvlGTleLLadt...kLtse....qqkylqvinrSGesL...ldiLnDiLDySkiEaG.hlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslnddsllfeVeDtGvGiaeee 626
                  Ar   ee  r       F+    H +RTP+  +  T +L a++   +L ++     ++ +q+  +S   +    ++ +Di D  + ++G  l++++ ++ l+++  +vl        +  ++L le +    +++  D + ++ ++  l++Na+  T+ G ++l++  +d + +f V+DtG G+  ++
  MMETSP1174-20130828|19291_1  32 ARLLLEETKRSLTmldNFMSRTLHHMRTPMHVMQHTCDLVAGKlrqNLCATsspvDKQNVQLLDESSVHIsntVTMVDDISDLLRFDQGsILNVKTVQVHLKSFGLEVLSACAP--TDSTVELALELSAGGAAWVASDSEVLKRIMHQLLSNAAMATKAGRITLKIGYQDARCTFMVTDTGPGLSTAQ 217
                  55555555555441114666666****************98753334543322226999***999986552227899************55789999*******9999775544..456899999999999****************************************************86654 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4e-05
    TIGR02956 645 GTGLGLAiskrlveamdgelsveSelgkGScFafelplergkk 687
                    G+GL ++ +lv+a +gel  +S +g    F+f+lp +  k+
  MMETSP1174-20130828|19291_1 264 SLGIGLSLAYHLVQAVGGELRYSSIPGD-TKFWFSLPAAAMKP 305
                  569999999***************9997.79*****9887665 PP

  == domain 3    score: 32.9 bits;  conditional E-value: 1e-11
    TIGR02956 701 parvLlvEDNevnamvaqglleklGhkvtlaesgksAleclee...kaFDlallDinLpDtdGvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlak 818
                  p  +L+vED  + a++ +  l+kl      ae+g+ A   l+e     + l+l+D+ +p +dG++ ++ +k+  +   + +++av+     e  +   + gFd f +KP++++qL+a+++k
  MMETSP1174-20130828|19291_1 404 PPLILVVEDTDICAKLICMTLRKLNCATKRAENGQVAVDMLREampGMYSLILMDLRMPVMDGLDATRLIKQELKL--DTPVVAVTGDSGPETQKICAEIGFDDFQNKPMKRNQLKAIVEK 522
                  3369*********************************999998555689****************99888876665..47************************************99887 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1     2e-14   8.2e-12     107     276 ..      39     216 ..      34     233 .. 0.81
   2 ?    1.3   0.0     0.075        31     294     325 ..     260     291 ..     255     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2e-14
    TIGR02966 107 lkrleqmRrdFvanvsHELrtPLtvlkGylet....leeep.eeddeaaekalelmeeqskrmqs...LvedLltLsrlEsaak.ekeeekvdvaelleelkkeaealseekehqielevdaavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeegaelsvkDtGeGIaae 276
                  +kr  +m  +F++   H +rtP+ v++   ++    l+++  ++++++ ++ ++l+ e s ++++   +v+d+  L r ++ +  + ++ +v++++   e+ +  +++ ++ e  +el++  a++v +d+e L+ +++ L++NA   t++ g+it+++  ++++ ++ v+DtG+G++++
  MMETSP1174-20130828|19291_1  39 TKRSLTMLDNFMSRTLHHMRTPMHVMQHTCDLvagkLRQNLcATSSPVDKQNVQLLDESSVHISNtvtMVDDISDLLRFDQGSIlNVKTVQVHLKSFGLEVLSACAPTDSTVELALELSAGGAAWVASDSEVLKRIMHQLLSNAAMATKA-GRITLKIGYQDARCTFMVTDTGPGLSTA 216
                  5666778899*****************9988711114455566788899999****999999985444899*********975426677789999998888888888888888*******************************998876.68**********************8653 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.075
    TIGR02966 294 retgGtGLGLaIvkHvlerheaeLeieSelgk 325
                  r t   G+GL++  H ++   +eL+ +S  g 
  MMETSP1174-20130828|19291_1 260 RCTNSLGIGLSLAYHLVQAVGGELRYSSIPGD 291
                  6677789*****************99998775 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.79   3.2e+02     188     210 ..      61      83 ..      32      92 .. 0.83
   2 !   44.3   0.0   6.8e-15   2.8e-12       3     117 ..     405     521 ..     403     526 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.79
    TIGR02154 188 vyveertvdvhirrlrkaleleg 210
                  ++v + t d   ++lr++l+ ++
  MMETSP1174-20130828|19291_1  61 MHVMQHTCDLVAGKLRQNLCATS 83 
                  67889999999999999998765 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 6.8e-15
    TIGR02154   3 krilvvedeeairellaynlekegyevveaedaeealalikeelP...dlilldWmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkellarik 117
                    ilvved +  ++l++++l+k +  + +ae+++ a+ +++e++P    lil+d  +p + G++ +r +++ e   + P++ +t  +  e +  + e G dd+  kP   ++l a ++
  MMETSP1174-20130828|19291_1 405 PLILVVEDTDICAKLICMTLRKLNCATKRAENGQVAVDMLREAMPgmySLILMDLRMPVMDGLDATRLIKQ-ELKLDTPVVAVTGDSGPETQKICAEIGFDDFQNKPMKRNQLKAIVE 521
                  569******************************************55558**************9988876.566789******987766666799*************999998775 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.2e-11   1.3e-08     238     410 ..      43     232 ..      34     234 .. 0.70
   2 !    8.5   0.0   0.00046      0.19     420     457 .]     262     299 ..     254     299 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.2e-11
    TIGR01386 238 fqrlsqFsadlAHelRtPltnLltqtqvaLsreRsg.........eeyrevlesnleEleRlsrmvedmLfLaradnaql.alereeldlaaelekvaelfevlaeerg..vslkvegeaevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipee......elsrlFdRFY 410
                   + l++F +   H +RtP+  +    +++  + R++         ++  ++l ++         mv+d+  L r d++ + +++  ++ l++   +v+    +     +  ++l+  g a v++d+++++R +  LlsNA+  t + ++i+++++ +   ++ +v++tg+g+  +        + +F RF+
  MMETSP1174-20130828|19291_1  43 LTMLDNFMSRTLHHMRTPMHVMQHTCDLVAGKLRQNlcatsspvdKQNVQLLDESSVHISNTVTMVDDISDLLRFDQGSIlNVKTVQVHLKSFGLEVLSACAPTDSTVElaLELSAGGAAWVASDSEVLKRIMHQLLSNAAMAT-KAGRITLKIGYQDARCTFMVTDTGPGLSTAqevaegDIPLVFQRFH 232
                  567889999999999999865554445554444432222222222455678999999999999**************98525667777777666566555555544444334555568899*******************9765.56789*******************9976441111115677777775 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00046
    TIGR01386 420 eegtGLGLaIvrsiveaHgGeveaesadgktrfklkfp 457
                  +++ G+GL++   +v+a gGe++ +s  g t+f++++p
  MMETSP1174-20130828|19291_1 262 TNSLGIGLSLAYHLVQAVGGELRYSSIPGDTKFWFSLP 299
                  5678*******************************987 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.1e-08   1.7e-05     548     625 ..     139     215 ..      88     218 .. 0.86
   2 !    4.9   0.0    0.0042       1.7     629     670 ..     250     291 ..     245     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.1e-08
    TIGR02916 548 llervieskraqkprievsvdkdlevradrerlervlghLvqNAleATeeeGkVkirverekeaavieieDsGqGmse 625
                  +l     + ++ +   e+s++ +  v  d e l+r++ +L+ NA  AT+  G++++++  ++ + +  ++D+G G+s 
  MMETSP1174-20130828|19291_1 139 VLSACAPTDSTVELALELSAGGAAWVASDSEVLKRIMHQLLSNAAMATK-AGRITLKIGYQDARCTFMVTDTGPGLST 215
                  5555566667777888999999999**********************96.7************************986 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0042
    TIGR02916 629 rerLFkPFdttKkaGmGiGvyesreyveelGGeieveStpgk 670
                  re++ k      ++ +GiG+  + ++v+++GGe+  +S pg 
  MMETSP1174-20130828|19291_1 250 REKIAKGLANRCTNSLGIGLSLAYHLVQAVGGELRYSSIPGD 291
                  5666666666667889***********************996 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09   6.9e-07       1     111 [.     407     521 ..     407     527 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.7e-09
    TIGR01387   1 ilvvedeqktaeylqqGlsesGyvvdivsnGr...dGlhlaekddydliildvmlpgldGwevlkalres.aketpvllltardevadkvkGlelGaddylvkpfefaellarvr 111
                  ilvved +  a+ +   l +       ++nG+   d l  a    y li++d+ +p +dG +  + ++++ + +tpv+ +t     + +    e+G dd+  kp++ ++l a v 
  MMETSP1174-20130828|19291_1 407 ILVVEDTDICAKLICMTLRKLNCATKRAENGQvavDMLREAMPGMYSLILMDLRMPVMDGLDATRLIKQElKLDTPVVAVTGDSGPETQKICAEIGFDDFQNKPMKRNQLKAIVE 521
                  89******************999999999997444778889999*******************99998762679*******998888888899************9999988775 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1     2e-08   8.1e-06       1     115 [.     407     525 ..     407     529 .] 0.89

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2e-08
    TIGR01818   1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralareqpd...llitdvrmPgedgldllkkikkr.rPklpvivmsahsdldaavkayqrGafeylpkPfdldeavalverala 115
                  +lvv+d      ++  +l++ +++++  +n++ ++ +l +  p+   l++ d+rmP +dgld  + ik+  + + pv+ ++  s  ++    ++ G  ++  kP+  +++ a+ve+   
  MMETSP1174-20130828|19291_1 407 ILVVEDTDICAKLICMTLRKLNCATKRAENGQVAVDMLREAMPGmysLILMDLRMPVMDGLDATRLIKQElKLDTPVVAVTGDSGPETQKICAEIGFDDFQNKPMKRNQLKAIVEKFTG 525
                  6888888888888999**********************99988633379******************97526799*********************************99999998665 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   9.2e-05       1     115 [.     407     522 ..     407     527 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-07
    TIGR02915   1 lliveddlglqkqlkwsladyelv..vaadresaialvrrheP...avvtldlGlPPdadsaseGlaaleqilaiaPdtkvivitGnddrenalkaielGaydfyqkPldadvlklivdr 115
                  +l+ved     k +  +l + + +   a++ + a++++r   P   +++++dl +P   d+  +  ++++q l+   dt v+ +tG+++ e      e+G  df +kP++ + lk iv++
  MMETSP1174-20130828|19291_1 407 ILVVEDTDICAKLICMTLRKLNCAtkRAENGQVAVDMLREAMPgmySLILMDLRMPVM-DG-LDATRLIKQELK--LDTPVVAVTGDSGPETQKICAEIGFDDFQNKPMKRNQLKAIVEK 522
                  689999988899999999765554116889999*********9444468899999853.33.344556666555..5899*********99999999********************986 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   9.3e-07   0.00038      34     123 ..     434     525 ..     406     529 .] 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.3e-07
    TIGR02875  34 aknGvealelikekkp...dvvvldiimpyldGlgvleklaeielkakpkvlllsavGqekitkravelGadyyvlkpfdleilaarirqlae 123
                  a+nG+ a+++++e  p    ++++d+ mp +dGl     ++++ +  +p v +    G e+  k + e+G d +  kp+  + l a + +++ 
  MMETSP1174-20130828|19291_1 434 AENGQVAVDMLREAMPgmySLILMDLRMPVMDGLDATRLIKQELKLDTPVVAVTGDSGPET-QKICAEIGFDDFQNKPMKRNQLKAIVEKFTG 525
                  89**************44347999***********99988888888889888888888773.455679***********99999888877665 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1     5e-06    0.0021     484     642 ..      45     214 ..      35     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 5e-06
    TIGR03785 484 YLenlssrLsHElrTPvAvVrsSLe........nLe..lqklekekqkYleRAqegverlsaiLnsmseAtRlEq.alqsaekedfdlsevlselvqgYqqlyeeqrfeleieeedl.vlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplP 642
                   L+n+ sr  H +rTP+ v +   +        nL   ++  +k++ + l+  +  ++   ++++ +s+  R +q ++ + ++ ++ l+    e+ ++   ++++++++le+++ +   +   +e+l  ++  l++Na+  +k  g I++++  ++ + + +v+  Gp l 
  MMETSP1174-20130828|19291_1  45 MLDNFMSRTLHHMRTPMHVMQHTCDlvagklrqNLCatSSPVDKQNVQLLDESSVHISNTVTMVDDISDLLRFDQgSILNVKTVQVHLKSFGLEVLSACAPTDSTVELALELSAGGAaWVASDSEVLKRIMHQLLSNAAMATK-AGRITLKIGYQDARCTFMVTDTGPGLS 214
                  5899***************9988761111111144311233445555699************************978999999*****************************998874677779**************97665.67899******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1837.43
//
Query:       MMETSP1174-20130828|19296_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2477.62
//
Query:       MMETSP1174-20130828|19293_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1692.57
//
Query:       MMETSP1174-20130828|19294_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1683.86
//
Query:       MMETSP1174-20130828|19297_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1341.89
//
Query:       MMETSP1174-20130828|19299_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1174-20130828|19301_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 729.82
//
Query:       MMETSP1174-20130828|19304_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|19302_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.5   0.0      0.048   11.6   0.0    1.4  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.2e-05     0.048       1      72 [.     377     446 ..     377     462 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.2e-05
    TIGR01662   1 klvvlDlDgtLi.....ddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslle 72 
                  klv++D+Dg ++     ++ ++    d++    +v + +  + + Gyk+v ++++s ig+ +    + ++ + s+++
  MMETSP1174-20130828|19302_1 377 KLVITDIDGAITrsntrGHLIPSLGRDWSH--SGVAKLFSDVVQNGYKIVYLSSRS-IGQAD----MTKDYLSSISQ 446
                  89**********887654555555666666..99999*******************.88744....44555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1528.03
//
Query:       MMETSP1174-20130828|19308_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.49
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|19303_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   61.2   0.1    5.1e-09   33.3   0.0    3.1  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   1.6e-09   6.5e-06       1     200 [.     116     336 ..     116     349 .. 0.59
   2 !   33.3   0.0   1.2e-12   5.1e-09     206     370 ..     310     485 ..     293     498 .. 0.68
   3 !    1.9   0.0    0.0043        18     399     429 ..     557     588 ..     526     604 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.6e-09
    TIGR03417   1 trpnililmvdqlagtllpaygp...aevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefasdi......ptyahylraaGyktalsGkmhfvGpdql.....hGfeerl.....ttdiyPadfgwtpdydkpeeridw.yhnlssvleaG..vavitnqleyddevafkakqklydl.arekdarPfcltvslthPhdPyvi 200
                  t+p i++++vd +  + ++  ++    + +++P +k+la  +v +++ y+ +  c+P+ra+ll+   P + g+y ++ ++ s+            +l+aa y++ + Gk       ++      Gf+  l     + d y  + + t +y + +    w     +sv        +  + l+y  +v  +  + + d  + +  + P  l v+   Ph P+ +
  MMETSP1174-20130828|19303_1 116 TKPHIILVLVDDMGFNDISYNNDpelVNQVETPFIKQLARSGVILEKFYAFA-DCTPSRAALLTSVHPLTSGMYMDTINYDSEWglplryRIIPQHLKAANYTSHIVGKWDIGHYTKMltpieRGFDSFLgyfgsSVDYYTHEVTQT-QYCETTACKYWlNKCDGSVFTDFhwNKEYLQTLNYSTDVYEHRVESIIDEyVEKGHSDPLFLYVAHQAPHSPHEA 336
                  6899*******99766665443311246789***************999766.6********************9999999985222111345689******999999975433333211111333333311111233333333322.344444444452223344443320123344556666666555555555430334445666666666666666655 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.2e-12
    TIGR03417 206 dlyedeeillPev..aleleeqdphskrllkaldlkekditeeqirrarrayfaaisy.vddkiGellevleetrladdtivvfvsdhGdmlGerG...lwy....kmsffegsarvPllvaaperleagr....veaavstvdllPtlvelagveleevlpaldGeslvpll.kgkerk 370
                  d y ++ +  P +   ++++ + ph     + + ++++ +t e+    rra faa+ y +d  i +++e+l++ +l   + + f+sd G + G+ G    w     k   +eg+ rvP +v++p  l  +r    +++ v   d+lPt+ +lag+   e++ a+dG s++  l +g+e+ 
  MMETSP1174-20130828|19303_1 310 DEYVEKGHSDPLFlyVAHQAPHSPHEASNETKAYFQSQFLTGEKG-WRRRASFAACLYeLDCAIQSMVESLQAGNLYSRSYIFFMSDNGAVPGKLGggsNWPlrggKFLPYEGGVRVPAFVHSPM-LPRKRwgstLTSLVHITDILPTILNLAGIG--EIAGAIDGISFLESLfTGEEGD 485
                  666666666666532333444444444444444444444555543.45899999999989*****************************986665523267444448888*************98.55444111133445567**********986..5666789999776553555543 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.0043
    TIGR03417 399 ceadPeqlydleadPkelenlaee.pehaetl 429
                  +  + + ly l++dP e+ nl +e p   ++l
  MMETSP1174-20130828|19303_1 557 TYFNASALYYLKTDPSERINLIHEhPRVFNKL 588
                  4456789*************976414443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.63
# Mc/sec: 1447.69
//
Query:       MMETSP1174-20130828|19314_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-08   31.2   0.0    2.7e-08   31.2   0.0    1.0  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
     0.0064   12.7   0.0     0.0064   12.7   0.0    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.3e-11   2.7e-08     190     233 ..       2      45 ..       1      50 [] 0.91

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.3e-11
    TIGR00737 190 avkiPVignGDitspedAkamLeetgadgvligRgalGkPwlfk 233
                  a+++PV++nG +  p+d  + L++tg+dg++++ + l  P lf+
  MMETSP1174-20130828|19314_1   2 ALRVPVLSNGNVRGPADLSRNLTTTGCDGLMVAEALLIDPGLFS 45 
                  679********************************999998876 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-06    0.0064     282     323 ..       2      43 ..       1      49 [. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-06
    TIGR03997 282 avdlPvvavGrikdpaqaervlaeGqadlvgvvRaqiaDPel 323
                  a+++Pv++ G ++ pa   r l    +d + v+ a++ DP l
  MMETSP1174-20130828|19314_1   2 ALRVPVLSNGNVRGPADLSRNLTTTGCDGLMVAEALLIDPGL 43 
                  689*******************9999**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 146.65
//
Query:       MMETSP1174-20130828|19312_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-12   45.1   0.0    5.4e-07   27.0   0.0    2.2  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    9.7e-09   33.2   0.0    3.3e-08   31.5   0.0    1.8  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    6.2e-08   30.3   0.0    5.1e-07   27.3   0.0    2.1  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    0.00075   16.7   0.0       0.02   12.0   0.0    2.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0026   15.1   0.0       0.44    7.8   0.0    2.2  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
  ------ inclusion threshold ------
      0.016   12.5   0.0      0.026   11.8   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.024   12.2   0.0       0.49    7.9   0.0    2.2  2  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-06    0.0014      34      85 ..     219     272 ..     184     287 .. 0.81
   2 !   27.0   0.0   9.3e-10   5.4e-07      87     147 ..     296     358 ..     286     374 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.3e-06
    TIGR01934  34 kieeekeekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakek 85 
                  +++ +k+ kvl +a+GtG++ +    + +  ++ t+vDls+  L+ a++  k+ 
  MMETSP1174-20130828|19312_1 219 ESTDNKPMKVLEIACGTGRFLTFARDNLPldTEFTAVDLSPFYLDKARDNDKNW 272
                  44555999************97777777799**************999887665 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 9.3e-10
    TIGR01934  87 eanvefieadaeeLpfednsfdavtiafGlRNvtd..iekaLkelaRVlkpggrlvilefskp 147
                   +++++++a+ae+Lpf+d++fdav + +    v +  +++  +e+aRV+kpggr ++ +  + 
  MMETSP1174-20130828|19312_1 296 IRPARMVQAKAEDLPFDDEEFDAVVCMYLYHEVPRniRAQIASEMARVIKPGGRAILTDSIQL 358
                  457899**********************999887622356679***********999888765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.6e-11   3.3e-08      14     134 ..     202     354 ..     199     382 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 5.6e-11
    TIGR02072  14 kvQreiakkLlellkekr..kfepakvLdiGcGtGiltrallkrfp.qaelialDiseemleqakkkls...........................nvqficgdieklplekksfDlivSnlalQWl..ddlsevlaelarvlkpgGllafst 134
                  ++Qr +   L+++  ek+    +p kvL+i+cGtG +    ++ +p + e++a+D+s+  l  a+++ +                              ++++ +e lp+ +++fD +v+    + +  +  +++ +e+arv+kpgG +++++
  MMETSP1174-20130828|19312_1 202 SMQRTALVPLVQYSMEKEstDNKPMKVLEIACGTGRFLTFARDNLPlDTEFTAVDLSPFYLDKARDNDKnwrsirrkvenkqsyagdgaaasaeirPARMVQAKAEDLPFDDEEFDAVVCMYLYHEVprNIRAQIASEMARVIKPGGRAILTD 354
                  5799999999998877777888899**********887777777772556****************9999***********************999999********************9988887632445778899999***999998876 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   8.7e-10   5.1e-07      93     152 ..     294     355 ..     212     361 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 8.7e-10
    TIGR02752  93 aklenvelvhgnamelpyednsfdyvtigfglrnvpdyl..qvlkemarvvkpggkvvclet 152
                  a++   ++v  +a +lp++d+ fd v   +   +vp  +  q+  emarv+kpgg+ +  ++
  MMETSP1174-20130828|19312_1 294 AEIRPARMVQAKAEDLPFDDEEFDAVVCMYLYHEVPRNIraQIASEMARVIKPGGRAILTDS 355
                  566667889999************************98744799***********9987765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.5e-05      0.02      98     152 ..     298     353 ..     203     356 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.5e-05
    TIGR01983  98 kieyelksveelaeeekesfDvvlamEvlEHvadl..eeilkecaellkpggilfls 152
                    +  ++++e+l  + +e+fD+v++m +   v+    ++i  e+a+++kpgg  +l+
  MMETSP1174-20130828|19312_1 298 PARMVQAKAEDLPFD-DEEFDAVVCMYLYHEVPRNirAQIASEMARVIKPGGRAILT 353
                  445667788999888.566**********999863226789999********99886 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00075      0.44      15      98 ..     177     271 ..     165     290 .. 0.69
   2 !    5.1   0.0    0.0048       2.8     103     126 ..     300     323 ..     288     346 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00075
    TIGR02021  15 erWaritsdeevsrvrqtvreGre.amrekllewl.....pkd..slkGkkvlDAGCGtGllsielAkr....GaivkavDiseklvelarkraek 98 
                  + W +  s +  ++  +t+  Gr+ +m++++l  l     +k+    k +kvl+  CGtG +  ++A++      + +avD+s+  +++ar++ ++
  MMETSP1174-20130828|19312_1 177 DGWMSQESANVYETSTETLFLGRQdSMQRTALVPLvqysmEKEstDNKPMKVLEIACGTGRFL-TFARDnlplDTEFTAVDLSPFYLDKARDNDKN 271
                  56777777777788888999998636777777655222112332346789**********984.56765122246789999999999999987765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0048
    TIGR02021 103 enveFevndleslegkfDavvalD 126
                    v+ + +dl  ++++fDavv++ 
  MMETSP1174-20130828|19312_1 300 RMVQAKAEDLPFDDEEFDAVVCMY 323
                  457888999**************5 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05     0.026      76     136 ..     211     273 ..     193     302 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.4e-05
    TIGR03534  76 Lveaaleel.kkkeklkvlDlgtGsGaIalalakelp.dakviavDiseeAlkvarkNakrlg 136
                  Lv+  +e+  ++++++kvl++ +G+G        +lp d++++avD+s+  l+ ar N k+ +
  MMETSP1174-20130828|19312_1 211 LVQYSMEKEsTDNKPMKVLEIACGTGRFLTFARDNLPlDTEFTAVDLSPFYLDKARDNDKNWR 273
                  455444443366778***********8776666666549******************988754 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00083      0.49      12      62 ..     217     270 ..     213     280 .. 0.75
   2 ?    1.8   0.0     0.062        36     121     152 ..     335     366 ..     327     392 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00083
    TIGR00537  12 eknlrelknddvleiGaGtGlvairlkek..gk.kivatdinPfavkllkenak 62 
                  ek+ ++ k+ +vlei  GtG     +++    +   +a+d++Pf   ++++n k
  MMETSP1174-20130828|19312_1 217 EKESTDNKPMKVLEIACGTGRFLTFARDNlpLDtEFTAVDLSPFYLDKARDNDK 270
                  5666789999**********5444333331133579*********999999754 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.062
    TIGR00537 121 rfldelpeilkegGrvqlvqsslsdeketldk 152
                  +   e+  ++k+gGr++l +s + +++ + dk
  MMETSP1174-20130828|19312_1 335 QIASEMARVIKPGGRAILTDSIQLGDRPVNDK 366
                  566789999***********999887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1667.86
//
Query:       MMETSP1174-20130828|19316_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1519.87
//
Query:       MMETSP1174-20130828|19321_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-15   53.6   0.3    8.3e-15   53.0   0.2    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    7.8e-13   46.2   0.0      1e-12   45.9   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
      8e-13   46.2   0.0    9.3e-13   46.0   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.2e-12   45.5   0.1    1.3e-12   45.3   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.7e-11   42.0   0.1    2.7e-11   41.4   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.6e-10   37.6   0.0    4.6e-10   37.2   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.2e-08   32.5   0.2    1.6e-08   32.1   0.2    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    5.2e-06   23.8   0.2    1.2e-05   22.7   0.1    1.5  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    6.3e-06   23.4   0.2    7.2e-06   23.3   0.1    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    0.00015   18.1   0.1    0.00018   17.8   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00033   17.7   0.0    0.00052   17.0   0.0    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0011   16.2   0.0     0.0016   15.8   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
  ------ inclusion threshold ------
      0.031   11.3   0.0       0.04   11.0   0.0    1.1  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.2   2.6e-17   8.3e-15     102     184 ..       5      87 ..       2      91 .. 0.97

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 2.6e-17
    TIGR01830 102 evikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietd 184
                  e +++n+ +v  v+ avl++ + +  G ii iss +g +G +    Y+asK  l g++ s+a El  + + vn+++PG+++t+
  MMETSP1174-20130828|19321_1   5 ELLNLNVVSVASVSSAVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQ 87 
                  6899****************************************************************************996 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   3.2e-15     1e-12     101     186 ..       3      87 ..       1      94 [. 0.91

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 3.2e-15
    TIGR02415 101 leklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivkte 186
                  l +l n+nv +v   + +a+ + + l+++G ii  +s ag+ g p+++ y ++kfa+ g++ + a eL +k ++vn+ +PG+v+t+
  MMETSP1174-20130828|19321_1   3 LRELLNLNVVSVA-SVSSAVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQ 87 
                  6678899999987.5677777778899*********************************************************97 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     3e-15   9.3e-13     118     203 ..       4      88 ..       2     133 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 3e-15
    TIGR03971 118 dtvldvnlkGvWktvkavvPa.lierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtam 203
                  +++l++n+  v  +  av+ + ++e   GG ii++ss ag  +lp+ + y a+k+ l g++ ++a el +  + vn+i+P  v+t+ 
  MMETSP1174-20130828|19321_1   4 RELLNLNVVSVASVSSAVLRQtMLES--GGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQS 88 
                  57888888888888888886526664..6*******************************************************985 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   4.2e-15   1.3e-12     104     186 ..       5      87 ..       2     133 .. 0.93

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 4.2e-15
    TIGR01963 104 kiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtp 186
                  +++++n+ s + ++ a+l++   +  G ii i+s  g  + ++  +Yva+K +l G++ ++A E  ++ + +n+i Pg v+t+
  MMETSP1174-20130828|19321_1   5 ELLNLNVVSVASVSSAVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQ 87 
                  578899999999*******9999999*******************************************************97 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   8.6e-14   2.7e-11     104     186 ..       5      87 ..       2      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 8.6e-14
    TIGR01829 104 evidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiate 186
                  e+++ n+ sv +v   v+ + +  + G ii iss  G+ G      y a+k  l G++ ++a+e   k v+vn+i+PG ++t+
  MMETSP1174-20130828|19321_1   5 ELLNLNVVSVASVSSAVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQ 87 
                  77899***********9987777777*******************************************************97 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.5e-12   4.6e-10     106     190 ..       5      88 ..       2     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.5e-12
    TIGR01832 106 dvlnvnlkavfllsqavakk.llkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnn 190
                  ++ln+n+ +v  +s av ++ +l++G  g ii i+s     G   +  y ask a+ G++ ++a+e+  k + vn+i+PG ++t+ 
  MMETSP1174-20130828|19321_1   5 ELLNLNVVSVASVSSAVLRQtMLESG--GDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQS 88 
                  689**********9999887255666..*******9988888888899**********************************9975 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.2   4.9e-11   1.6e-08     118     185 ..      20      87 ..       6      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 4.9e-11
    TIGR01831 118 lvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidte 185
                   v+    +  gg ii ++s +g +g      y a+k  l g + ++a el +++++vn i+pg+++t+
  MMETSP1174-20130828|19321_1  20 AVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQ 87 
                  5556667789********************************************************97 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   3.7e-08   1.2e-05     107     189 ..       6      88 ..       2      98 .. 0.91
   2 ?   -1.9   0.0       1.2   3.7e+02     196     219 ..     131     154 ..      97     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.7e-08
    TIGR03206 107 liainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtal 189
                  l+ +n++    +  avl+  +    g i+ i+s a+++g      y a k  l  ++ ++a el  + ++vn + pg  +t  
  MMETSP1174-20130828|19321_1   6 LLNLNVVSVASVSSAVLRQTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVNTQS 88 
                  6788889999999999988777788****************************************************999975 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
    TIGR03206 196 eaekpeklieaftraiplgrlgkp 219
                    e  e l + ft a+ l  + +p
  MMETSP1174-20130828|19321_1 131 VDELDEALAQGFTPAVALKSINEP 154
                  445567778888888888777766 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.3e-08   7.2e-06     107     190 ..       2      87 ..       1     146 [. 0.87

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.3e-08
    TIGR03325 107 afdevfeinvkgyllavkaalp.alvasrgsviftvsnagfypngggalytaakhavvglvkelayela.pyvrvngvapgglstd 190
                  a+ e+ ++nv +      a+l  ++++s g +i+  s ag         y a+k a+ g+   +a el   +v vn ++pg ++t+
  MMETSP1174-20130828|19321_1   2 ALRELLNLNVVSVASVSSAVLRqTMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKdKRVAVNTISPGMVNTQ 87 
                  678999****999999999996257889999999999***998888888******************97258*********88764 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.8e-07   0.00018     540     600 ..      25      85 ..       7     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.8e-07
    TIGR02632 540 rkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                  +  + gg++++i+s+ + +  +    y a+k a   ++  +a+el ++ + vnt+ P  v 
  MMETSP1174-20130828|19321_1  25 TMLESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGMVN 85 
                  334679***************************************************9885 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06   0.00052     167     205 ..      45      83 ..      22      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
    TIGR02685 167 llgfslytmakealeGltrsaalelaslqirvngvapGl 205
                  l++   y  +k aleG++ s a el  +++ vn+++pG+
  MMETSP1174-20130828|19321_1  45 LPTMGPYVASKFALEGMAASMAAELKDKRVAVNTISPGM 83 
                  4555669999****************************8 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     5e-06    0.0016     118     199 ..       7      87 ..       2      92 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5e-06
    TIGR01500 118 ydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd 199
                   ++nv+s+ +++s +l++   l  +   ++ +ss +    ++++  Y ask a + +   +a e k + v v   +pG+++t+
  MMETSP1174-20130828|19321_1   7 LNLNVVSVASVSSAVLRQTM-L-ESGGDIIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAELKdKRVAVNTISPGMVNTQ 87 
                  579**************987.4.3445678899999999***************************667888889******98 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.04     133     197 ..      11      86 ..       2      93 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00013
    TIGR01746 133 yvStlsvlaaielsak.......vevddatetkkpglatGYaqSKwvaEllvreasdr....glpvtivRpGrilg 197
                   vS +sv++a+  ++        ++ ++ + +      ++Y +SK++ E + +  + +     + v+++ pG++  
  MMETSP1174-20130828|19321_1  11 VVSVASVSSAVLRQTMlesggdiIMISSRAGKIGLPTMGPYVASKFALEGMAASMAAElkdkRVAVNTISPGMVNT 86 
                  455555555544333234555677777777777777889**********9887654444555999999****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 672.72
//
Query:       MMETSP1174-20130828|19320_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1561.11
//
Query:       MMETSP1174-20130828|19322_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|19323_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1174-20130828|19326_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   11.6   0.0      0.015   11.2   0.0    1.1  1  TIGR00484 EF-G: translation elongation factor G
      0.018   10.9   0.0      0.045    9.6   0.0    1.6  1  TIGR00490 aEF-2: translation elongation factor aEF-2


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.3e-06     0.015     583     666 ..      24     109 ..      19     123 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.3e-06
    TIGR00484 583 aaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegse..eresvkvvkaevPlsemfGyatdlrsatqGrae 666
                  a  la ++a    +  ++e  ++ +++  +  lG++   l++ rg +  ++  e +++  ++a +P++e  G++++l  +t G a+
  MMETSP1174-20130828|19326_1  24 AMKLACRAALLSGDVRVVEKKLRCDLQCNSSQLGNLYATLAKMRGEVIKEDivEGTELFSITALLPVTEAQGFSAALLKKTSGAAT 109
                  4567778888888888999999***********************986554226667889*********************99886 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   2.2e-05     0.045     599     688 ..      18     109 ..      15     168 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.2e-05
    TIGR00490 599 paqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqil..emkqegdmvtikakvpvaemfgfagairgategral 688
                  p ++  a++ + +aall+ +  ++e   +  ++     +g     + + rg+++  ++ +  ++  i+a  pv+e  gf+ a+   t+g a 
  MMETSP1174-20130828|19326_1  18 PHELSKAMKLACRAALLSGDVRVVEKKLRCDLQCNSSQLGNLYATLAKMRGEVIkeDIVEGTELFSITALLPVTEAQGFSAALLKKTSGAAT 109
                  55667799999****************999**********************99323444558999******************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|19324_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    4.6  10.5        2.8    4.1   7.3    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.3   0.00069       2.8      11      48 ..     118     157 ..     110     164 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00069
    TIGR01642  11 ksrerdrdkskeRsRkRsrdrsrdRdRdrr..drrrsrrk 48 
                   +  rd++  +eR+R+R  +r+r+ + dr+  +r  ++++
  MMETSP1174-20130828|19324_1 118 PELRRDKEEEEERQRRRVASRQRQQSLDRQhqNRAATQQQ 157
                  5556778788888888877777776555551144444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1174-20130828|19329_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|19330_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 403.51
//
Query:       MMETSP1174-20130828|19332_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 450.96
//
Query:       MMETSP1174-20130828|19337_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1428.31
//
Query:       MMETSP1174-20130828|19339_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 795.60
//
Query:       MMETSP1174-20130828|19343_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 533.03
//
Query:       MMETSP1174-20130828|19342_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1426.91
//
Query:       MMETSP1174-20130828|19346_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 984.42
//
Query:       MMETSP1174-20130828|19352_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 150.84
//
Query:       MMETSP1174-20130828|19354_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 559.22
//
Query:       MMETSP1174-20130828|19356_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 216.32
//
Query:       MMETSP1174-20130828|19358_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 413.00
//
Query:       MMETSP1174-20130828|19361_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.78
# Mc/sec: 323.20
//
Query:       MMETSP1174-20130828|19359_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-08   31.2   0.1    5.3e-08   30.7   0.1    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA
    9.4e-08   29.5   0.1    1.8e-06   25.4   0.0    2.2  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00016   19.0   0.1      0.067   10.4   0.0    2.3  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   3.8e-11   5.3e-08       3      68 ..      75     148 ..      73     198 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 3.8e-11
    TIGR00249   3 lylmrHGeAkekaasDkeRqLtkkGkdeaervaqwLkkag........veldrilvSplvRAeqtaeivadald 68 
                  + l+rHG+ +e+ + D+ R+Lt  G  +ae  +++L k+         v   r+ vS++ RA +ta+i++ +l 
  MMETSP1174-20130828|19359_1  75 IILVRHGQYDETFPEDERRKLTPLGRRQAEATGKRLAKIIanakgddvVAHVRMHVSGMTRARETADIIKGHLP 148
                  779*********************************9998889999998889*****************99987 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.3e-09   1.8e-06       1     174 [.      75     262 ..      75     264 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.3e-09
    TIGR03162   1 lyLiRHgevevnkgkcYGqtDvpLaekgeeqaaalrekl..........edvkfdavvsSplsRcrelAellaeklklpi...ekddrLrEmdfGdw....EgksydeisekypeldawakdlaharvpgGEsvadfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsieveygsit 174
                  ++L+RHg+ + +          +L+  g++qa+a  ++l          + v   + + S ++R+re+A++++ +l  ++     + +L+E    +        s ++i ++ ++++a  +++   ++ g    ++ +   +e  e ++++++e  ++v Hg vir +++++ +lp e++l++++ ++s+t
  MMETSP1174-20130828|19359_1  75 IILVRHGQYDETFPE---DERRKLTPLGRRQAEATGKRLakiianakgdDVVAHVRMHVSGMTRARETADIIKGHLPAEVpllDPNHDLNEGRPAHViparKQSSDRQIRQDNARVEAAFRSIFYRALAGSRETKEEEMESQESTEPIKAHAHEYDIVVCHGNVIRYFAMRAIQLPPEAWLRLSTFNCSLT 262
                  79******9954333...45567777777777777777766676665434444556699**************98776663145666788854333222214444555666655888777777666666666666667778999999999999999***************************99999987 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   4.9e-05     0.067       2      69 ..      75     147 ..      74     163 .. 0.65
   2 !    6.4   0.0   0.00085       1.2     141     183 ..     221     263 ..     189     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.9e-05
    TIGR03848   2 vllvrhgrstantaktLaGrtpGveLderGreqaaalaerladlpiaa..........ivssPlercretveaiaear 69 
                  ++lvrhg+  + t        +  +L+  Gr+qa+a+ +rla++  +a          +  s ++r+ret++ i  ++
  MMETSP1174-20130828|19359_1  75 IILVRHGQYDE-TFPE----DERRKLTPLGRRQAEATGKRLAKIIANAkgddvvahvrMHVSGMTRARETADIIKGHL 147
                  79999994433.3333....233469999************9986543222211111134588888888888776655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00085
    TIGR03848 141 hgpdavwvavshgDviksvladalGlhlDlfqrievdPasvsv 183
                   ++++  ++v hg+vi+     a+ l  + + r++   +s++ 
  MMETSP1174-20130828|19359_1 221 AHAHEYDIVVCHGNVIRYFAMRAIQLPPEAWLRLSTFNCSLTY 263
                  45566678899****************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1311.09
//
Query:       MMETSP1174-20130828|19370_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 505.20
//
Query:       MMETSP1174-20130828|19371_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 509.75
//
Query:       MMETSP1174-20130828|19377_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 969.61
//
Query:       MMETSP1174-20130828|19379_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|19381_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.9   1.6       0.03   11.8   1.1    1.0  1  TIGR00255 TIGR00255: TIGR00255 family protein


Domain annotation for each model (and alignments):
>> TIGR00255  TIGR00255: TIGR00255 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   7.3e-06      0.03     133     210 ..       2      84 ..       1      87 [. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.3e-06
    TIGR00255 133 llaalee.alkdfiemRekEGeklkkdieqrldsi...eeevkkvksaaadvlqklrerllariedlaee.vldenrleeElv 210
                  l+aalee al++  ++R  EG   +++ eq l+     e+ v+  ++++ + l  +   l ar+ +l +e + +  rl+ E+v
  MMETSP1174-20130828|19381_1   2 LKAALEEqALEHERQGRALEGSLKAALEEQVLEREqvhEAWVRALEERILAALDEQDRVLEARMAELSQEpFSELTRLASEVV 84 
                  567776538999999******987777777776440014456666677777777777889999*9998874678899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 326.31
//
Query:       MMETSP1174-20130828|19392_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 255.18
//
Query:       MMETSP1174-20130828|19388_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.59
# Mc/sec: 868.00
//
Query:       MMETSP1174-20130828|19396_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 389.20
//
Query:       MMETSP1174-20130828|19398_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 193.27
//
Query:       MMETSP1174-20130828|19407_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|19410_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-16   56.2   9.5    8.4e-16   55.7   6.6    1.2  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.9e-13   46.5   9.2    7.4e-13   45.9   6.4    1.3  1  TIGR00898 2A0119: cation transport protein
    1.1e-09   35.2  12.2    1.5e-09   34.8   8.4    1.2  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.4e-07   27.6  15.6    2.6e-07   26.7  10.8    1.3  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
     0.0026   15.8   8.3     0.0026   15.8   5.7    1.7  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   6.6     1e-18   8.4e-16      16     202 ..     133     325 .]     126     325 .] 0.81

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 1e-18
    TIGR00895  16 irvlilsflivlvdG..ldllvlgfaapalskewg.......ldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvek 202
                  ++vli+ +l + +    +++ +l+++ap   +e++       +   e  +l  a+  G +lG +++gp+aD igR rvl++s +++ +    + +   +       f+ g G Gg +     L++E++  r+r++++ + avG+ iG +  +lla   +p +g++ +f++  i+p ++  +   +L Es  +l e+
  MMETSP1174-20130828|19410_1 133 WTVLIVVVLTTTIAAfaIETNLLAYVAPCAVAEFSsaddydtIADLE-YSLWDAAYYGNMLGCFIIGPMADIIGRWRVLMFSSVVVVISVYFLQYRYLIECSGGQDFFVGFGEGGCIV-SESLIAEFVIPRYRGSIMNISAVGWGIGSVSVSLLAKYTVPYYGYK-MFMFYCIVPYVVTCFGLCFLVESPVWLLEQ 325
                  55555555555555411567788888888888775221111122222.25788999*************************9888888888888887777788899*********875.689*****************************************98.788888********************9875 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   6.4     9e-16   7.4e-13     136     272 ..     187     325 .]     154     325 .] 0.94

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 9e-16
    TIGR00898 136 fvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallA.Ylird..WRwLlllvslPlvlflvlvwfvpESpRwlisq 272
                    G +lG +++G ++D  GR +vL++s +v  +s     +   +++     + vG+g +g  +v+  Li+Ef+   +R  + +++ v + +G ++ +llA Y ++    ++ ++   +P v++++   f+ ESp wl+ q
  MMETSP1174-20130828|19410_1 187 YYGNMLGCFIIGPMADIIGRWRVLMFSSVVVVISVYFLQYRYLIECSGGQDFFVGFGEGG-CIVSESLIAEFVIPRYRGSIMNISAVGWGIGSVSVSLLAkYTVPYygYKMFMFYCIVPYVVTCFGLCFLVESPVWLLEQ 325
                  5799***************************99999999999999999999*********.888999*********************************88888899*****************************976 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   8.4   1.8e-12   1.5e-09     106     254 ..     184     325 .]     130     325 .] 0.81

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 1.8e-12
    TIGR00879 106 sillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvek 254
                   +++ G + g++++g + d  gr + l+++++++vi+  + ++    + +e      +++G+g G+ ++++ + i+E+  +  Rg +  ++ + + +G + ++++    +++    g+++ + ++++p ++ + gl+fl esp+wL+e+
  MMETSP1174-20130828|19410_1 184 DAAYYGNMLGCFIIGPMADIIGRWRVLMFSSVVVVISVYFLQYR---YLIECSGGQDFFVGFGEGG-CIVSESLIAEFVIPRYRGSIMNISAVGWGIGSVSVSLLA---KYTVPYYGYKMFMFYCIVPYVVTCFGLCFLVESPVWLLEQ 325
                  46788***********************************9333...3355777778******997.689999*********************************...8888899******************************986 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7  10.8   3.2e-10   2.6e-07     163     363 ..     130     324 ..     110     325 .] 0.80

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.2e-10
    TIGR01299 163 rfqwalyf..vlglalmadgvevfvvgfvlpsaekdlclsdsnkgl......lglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcr....llsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalpsvsavvalttqpesprflle 363
                     w++ +  vl  ++ a  +e  ++ +v p a  ++  +d  + +      l    y g m+g+f+ g +ad +gr + l+ s    sv   +s +   y +++ c     ++ g+g gg+i +  s +ae++    rg  +   ++ w ig v  + +a   +p+yg+              +f++ c +p v++   l +  esp +lle
  MMETSP1174-20130828|19410_1 130 PNGWTVLIvvVLTTTIAAFAIETNLLAYVAPCAVAEFSSADDYDTIadleysLWDAAYYGNMLGCFIIGPMADIIGRWRVLMFS----SVVVVISVYFLQYRYLIECSggqdFFVGFGEGGCI-VSESLIAEFVIPRYRGSIMNISAVGWGIGSVSVSLLAKYTVPYYGYK-------------MFMFYCIVPYVVTCFGLCFLVESPVWLLE 324
                  55687665115667788999***********99999988776655422121255679**********************99887....4555666666778888888533337899****999.5679****************************************974.............56677888888888888888888888887 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.1   9.1e+02     116     133 ..     133     150 ..     129     159 .. 0.58
   2 !   15.8   5.7   3.1e-06    0.0026       9     139 ..     192     316 ..     186     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.1
    TIGR00880 116 wralflilallallafil 133
                  w +l ++++ + ++af++
  MMETSP1174-20130828|19410_1 133 WTVLIVVVLTTTIAAFAI 150
                  555555555555555544 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.1e-06
    TIGR00880   9 lgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllp 139
                  lg ++++p+++    ++Gr  vl+++ +++v+s   +     i+      +++Gfg + ++v+  +lia+++ +++r+ ++ + ++g  +g +   ll  + ++++g ++ f++ +++  +++   l++l 
  MMETSP1174-20130828|19410_1 192 LGCFIIGPMAD----IIGRWRVLMFSSVVVVISVYFLQYRYLIECSGGQDFFVGFGEGGCIVSE-SLIAEFVIPRYRGSIMNISAVGWGIGSVSVSLLAKYTVPYYGYKM-FMFYCIVPYVVTCFGLCFLV 316
                  56677777777....******************99999999999999**************997.*******************************************65.66666665555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1046.26
//
Query:       MMETSP1174-20130828|19405_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.48
# Mc/sec: 1820.35
//
Query:       MMETSP1174-20130828|19417_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   15.2   0.0     0.0046   14.8   0.0    1.2  1  TIGR00586 mutt: mutator mutT protein


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-06    0.0046      12      55 ..      42      81 ..      34      83 .] 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
    TIGR00586 12 irnenneifitrraadadlanklefPGGkieaGetpeqavvrel 55
                 +    + i + rra ++++a      GG +e+Ge  e++v rel
  MMETSP1174-20130828|19417_1 42 VEVPSGSIVLVRRADNGKYATI----GGFVEVGEAVEETVAREL 81
                 34467999999**999988875....9****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 342.35
//
Query:       MMETSP1174-20130828|19418_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 636.99
//
Query:       MMETSP1174-20130828|19415_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   26.6   0.0    1.3e-06   26.3   0.0    1.2  1  TIGR00586 mutt: mutator mutT protein
    2.3e-05   21.8   0.1    3.6e-05   21.2   0.1    1.2  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
    9.6e-05   19.9   0.1    0.00015   19.3   0.0    1.2  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   9.4e-10   1.3e-06      38      81 ..      12      57 ..       2      82 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9.4e-10
    TIGR00586 38 GGkieaGetpeqavvrelqeevgitaqhfel..fekleyeypqkkl 81
                  G +eaGet e++v re++ee g+t+  +++  ++   + +pq  +
  MMETSP1174-20130828|19415_1 12 AGFVEAGETLEECVAREVHEETGVTVDAGSVryLKSQPWPFPQSSM 57
                 588**********************998875313444577777665 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   2.7e-08   3.6e-05      51      77 ..      12      38 ..       2      48 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.7e-08
    TIGR02705 51 GGkveegetskeaaiRevleetGaivk 77
                  G ve get +e ++Rev+eetG +v 
  MMETSP1174-20130828|19415_1 12 AGFVEAGETLEECVAREVHEETGVTVD 38
                 5889*******************9985 PP

>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.1e-07   0.00015      84     112 ..      10      40 ..       2      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.1e-07
    TIGR00052  84 lvaglvekaeslEdvarrEaiEEaGyqv..k 112
                    ag ve +e lE+++ rE  EE+G+ v  +
  MMETSP1174-20130828|19415_1  10 ALAGFVEAGETLEECVAREVHEETGVTVdaG 40 
                  679***********************99544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 423.59
//
Query:       MMETSP1174-20130828|19413_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 935.92
//
Query:       MMETSP1174-20130828|19422_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|19424_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|19429_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|19432_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 233.09
//
Query:       MMETSP1174-20130828|19433_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 555.13
//
Query:       MMETSP1174-20130828|19437_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|19435_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    5.8   8.7        1.1    6.9   0.0    2.6  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.1    0.0053        22      49     138 ..      56     153 ..      21     174 .. 0.54
   2 ?    6.9   0.0   0.00028       1.1     110     166 ..     285     352 ..     247     365 .. 0.74
   3 ?   -3.4   0.1      0.38   1.6e+03      79     101 ..     395     417 ..     383     439 .. 0.40

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0053
    TIGR03499  49 aaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.............eelrkelkalkellekqlselal..eeedp 138
                  + ++ ++s++   + ++++++ ++ +++++++++ +++ +k+ ++++ ++++ ++                    e++ ++++al++ +    +++ +  +++++
  MMETSP1174-20130828|19435_1  56 VNVERDPSMADPFQVKSEESRHDSGRARRKAAHKHRQRLAKDLRMSSVPPEKLRA------MpkpqhcpelvpllEQWCRNIDALRAKIPLSKQPM-WerSQQKE 153
                  3444444222222222222222222222222222233333333333333333222......03333346688889999999999999998888876.33433333 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00028
    TIGR03499 110 e...........eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke 166
                  +            +l+k ++ ++++++    ++a++   + +++++  l+++gvsee+a+e+ +k+ e
  MMETSP1174-20130828|19435_1 285 TvhgsnfgmreqLKLHKMVEMMRNAIDLDDPSAAAKLFMGAKKNAIVLLKANGVSEETADEIEAKVAE 352
                  033444444444678888888888888888887779999***********************999987 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.38
    TIGR03499  79 skaeekeekekeaeekaaeaaqe 101
                  +++++  e++k  ++ a +a+ +
  MMETSP1174-20130828|19435_1 395 KAVRATIEQAKLLQDLALRAKFA 417
                  22222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 1070.31
//
Query:       MMETSP1174-20130828|19442_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 260.76
//
Query:       MMETSP1174-20130828|19441_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1005.36
//
Query:       MMETSP1174-20130828|19434_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-50  169.0   0.1    5.9e-38  128.4   0.0    2.1  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.7e-14   1.1e-10      61     111 ..     269     319 ..     253     330 .. 0.90
   2 !  128.4   0.0   1.4e-41   5.9e-38     111     342 ..     406     645 ..     375     656 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.7e-14
    TIGR01982  61 PifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkp 111
                   +++K+GQ ls+RaD+ p+ +a+ L+ Lqd++p+  ++++rk+i+++++ +
  MMETSP1174-20130828|19434_1 269 SVWVKMGQYLSARADVTPARWAAALKILQDDMPSDAHADVRKTIQEAFQGI 319
                  589*******************************************99873 PP

  == domain 2    score: 128.4 bits;  conditional E-value: 1.4e-41
    TIGR01982 111 pveelFaefeekPlAaASiaQvhkAvlveg..keVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenf..kndkklivPevyweltservltlewidg.ipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd.....gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsd 342
                   + ++F+ef+  P+A+ASiaQvh+A+l +   +eVavKv+  g+++ +++di+   ++ak++  l+++++    + v ++ ek +++El+++ Ea n + ++  +   +++++ivPev+  l+s+  + + ++d   +++dl++l   G+d+ al e +v+  + q +++++  aD+HpGN+lv+       ++ ++lD G   +l+++e + l + ++++   d+ + a  +  +gyv ++
  MMETSP1174-20130828|19434_1 406 VIGAVFHEFDYDPIASASIAQVHRAKLADSvrTEVAVKVMHRGVDRLFRQDIRRGIKIAKVAAWLNSDFEL--LVTVWESWEKDIEQELNFEHEAGNLKSVRSSMigLHESNVIVPEVIDRLVSKTCFAMGFVDNcFKLDDLTALSLYGVDQTALLEVIVHAWCCQLFQNNLANADPHPGNVLVRLSgsdkgAQPVLLDWGWTVSLEQQELEGLRRFVIAMSDMDMTAAAAALKLMGYVNNQ 645
                  56789************************9999*********************************99995..58899*************************99445899**********************96269**********************************************877566667899*************************************99***9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.82
# Mc/sec: 1226.53
//
Query:       MMETSP1174-20130828|19444_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 347.57
//
Query:       MMETSP1174-20130828|19451_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 506.84
//
Query:       MMETSP1174-20130828|19453_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|19446_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 2079.97
//
Query:       MMETSP1174-20130828|19452_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    4.7  15.2        1.5    4.5  10.5    1.0  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.5   0.00037       1.5      84     272 ..      21     211 ..       3     219 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00037
    TIGR00592  84 avriaalakkkkdrkkslgkDd..lladilqelektekaekkikerlvsvlkkkfssaakvvaindksnetaaavkkvkkaspvskrkllekilvpvplkraefaaedvqkeedeeeelasvaietlfedqedl..lesdesaadeekveetedviakkkaaeseeeervveekkrkkpttgsyvesvseeis 272
                  + r a +a+  ++ k+ l+kDd  l ++   e  ++e++ kk++e++v +  +  ++a + +a+      +  +++kv  a++ + +   e+   ++    +  +ae+++k     e+ a  a  + +  ++ +     +e+    e v +  + +akk  a+   +e+ + ek++ + + ++++ s ++ ++
  MMETSP1174-20130828|19452_1  21 TARAAEAARVSASEKTALEKDDvsLAENAFAERLSAEQLVKKATEAEVASDASAAEQATAAQAVATAATAERLVMEKVAVAEAAAAKADAEQLVLETAAIEKSVLAEQAEKAAAAAETAADAAAAERSAAEKAFkqKVVAEK-TSAERVVAA-EAAAKKASAARLAAEKLAAEKAQAEMSAAVPMRSAADRAE 211
                  4566677777899999999999833445666666699999999999999999999999999999999999999999999999999999999999998766777777777777666666555544444444446632223343.223333332.3566777777777777777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       639  (0.155778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 648.21
//
Query:       MMETSP1174-20130828|19456_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1174-20130828|19458_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|19454_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 2235.82
//
Query:       MMETSP1174-20130828|19461_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 435.96
//
Query:       MMETSP1174-20130828|19462_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 435.56
//
Query:       MMETSP1174-20130828|19465_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1174-20130828|19466_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|19460_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-72  240.8  11.2    6.9e-72  240.3   7.7    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   7.7   1.7e-75   6.9e-72       3     297 ..     126     424 ..     124     430 .. 0.96

  Alignments for each domain:
  == domain 1    score: 240.3 bits;  conditional E-value: 1.7e-75
    TIGR00817   3 tgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk......sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyq.qvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                  + ++f++wy+lnv++ni nk++l+ ++ p+l+++++lavg l++ll w+s+l  ++   +  l++llp++++h  g+  +  sl++ avSfth++ka+ep+fs+++s+++ ++++   +y +L+p+v+Gv+ a  +++sf+ ++f  am sn++f  r +fsK ++t         l   nl+ +++il++++++p a++ eg+ + +  + +a+ ++   +lvt+ l+  +g+fH  +  v ++ l +v p+t +vgN+lKRvv+Iv+++++f++++s+ +++G ++ i Gv lY   k++
  MMETSP1174-20130828|19460_1 126 VLFYFAVWYALNVVYNIKNKQVLNRLELPWLVSVAQLAVGALYALLVWASRLRAFPDRGALDLQALLPIGLFHGAGQALTVLSLGAGAVSFTHIVKAMEPFFSAIISAIVSKKVLKPQVYATLIPVVGGVSIAVAKDVSFSAVSFGCAMSSNLAFACRAVFSKSAMTSPlktpakPLTAANLFGVVTILAFLMMLPLALLAEGPVFRA-RWGDAVNGISSGELVTQILL--SGFFHYTNnEVMYMALSNVHPITLAVGNTLKRVVIIVAALIVFRNPMSTTTAVGSAVGIGGVLLYTLTKLH 424
                  6689*******************************************************************************************************************************************************************768899999***************************98887.9**************99876..678****99********************************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1441.98
//
Query:       MMETSP1174-20130828|19467_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.96
# Mc/sec: 167.74
//
Query:       MMETSP1174-20130828|19464_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.66
# Mc/sec: 1921.84
//
Query:       MMETSP1174-20130828|19473_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|19475_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|19476_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 188.56
//
Query:       MMETSP1174-20130828|19471_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 1836.27
//
Query:       MMETSP1174-20130828|19478_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 653.95
//
Query:       MMETSP1174-20130828|19483_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1174-20130828|19486_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|19494_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.42
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|19491_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1543.87
//
Query:       MMETSP1174-20130828|19496_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|19497_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 579.60
//
Query:       MMETSP1174-20130828|19492_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1119.27
//
Query:       MMETSP1174-20130828|19498_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 786.86
//
Query:       MMETSP1174-20130828|19499_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 474.45
//
Query:       MMETSP1174-20130828|19503_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 480.29
//
Query:       MMETSP1174-20130828|19507_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|19514_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 288.95
//
Query:       MMETSP1174-20130828|19512_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 799.70
//
Query:       MMETSP1174-20130828|19511_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 928.18
//
Query:       MMETSP1174-20130828|19519_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|19520_1  [L=943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 1857.70
//
Query:       MMETSP1174-20130828|19524_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1174-20130828|19528_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 280.48
//
Query:       MMETSP1174-20130828|19530_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 853.22
//
Query:       MMETSP1174-20130828|19531_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 231.98
//
Query:       MMETSP1174-20130828|19537_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 523.56
//
Query:       MMETSP1174-20130828|19539_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1174-20130828|19536_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1123.69
//
Query:       MMETSP1174-20130828|19543_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|19538_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-09   34.1   0.0    6.2e-09   33.4   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    7.3e-08   29.8   0.0    1.4e-07   28.9   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.4e-07   27.3   0.0      7e-07   26.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      2e-06   25.6   0.0    4.5e-06   24.5   0.0    1.5  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      3e-05   21.5   0.0    4.9e-05   20.8   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    3.8e-05   20.8   0.0    6.1e-05   20.1   0.0    1.3  1  TIGR00452 TIGR00452: putative methyltransferase
    0.00075   15.9   0.0      0.001   15.4   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
  ------ inclusion threshold ------
      0.018   12.3   0.0      0.032   11.5   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.2e-11   6.2e-09      48     142 ..     190     289 ..     183     301 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.2e-11
    TIGR02021  48 lpkdslkGkkvlDAGCGtGllsielAkrG.aivkavDiseklvelarkraekedeaen..veFevndlesle..gkfDavvalDvlihYpaediakaler 142
                  l + +++Gkk+lD GCGtG + +++  +G  + +a D se+++++a ++  k  + ++  ++  v    s    + fD+v +l v+     +d a+ le 
  MMETSP1174-20130828|19538_1 190 LDDLNMAGKKMLDSGCGTGAFFEPMLGKGlSELHAYDPSESMISEALNKVAKFPSCDRskMKLSVAWSSSHYpdNYFDVVTSLQVVQNLVPDDPAESLEA 289
                  454489*****************9999993579*****************999888883355555444444344889******99987777777766665 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.8e-10   1.4e-07      39     142 ..     196     310 ..     184     332 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.8e-10
    TIGR01934  39 keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLp.fednsfdavtiafGlRNvtdieka.........LkelaRVlkpggrlvil 142
                  +++k+lD  +GtG +   +  k   ++ ++D+se+m+  a +k+ +  +  + +++ + a + + ++dn fd+vt    + N++  + a         L+e++RVlkpgg  ++ 
  MMETSP1174-20130828|19538_1 196 AGKKMLDSGCGTGAFFEPMLGKGLSELHAYDPSESMISEALNKVAKFpSCDRSKMKLSVAWSSShYPDNYFDVVTSLQVVQNLVPDDPAeslearagyLREMFRVLKPGGVAMVA 310
                  789**************9999999******************998887555555555555444339****************86432222222233449***********99885 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-09     7e-07      45     153 ..     192     311 ..     164     318 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.4e-09
    TIGR01983  45 ekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvl.........EHvadleeilkecaellkpggilflst 153
                  + +++g+k+lD GcG G + e++  +g++  ++ D se++i+ A ++ +k p   + + +l+ +   ++  ++ fDvv+++ v+         E  +  +  l+e+ ++lkpgg+ +++t
  MMETSP1174-20130828|19538_1 192 DLNMAGKKMLDSGCGTGAFFEPMLGKGLSeLHAYDPSESMISEALNKVAKFPSCdRSKMKLSVAWSSSHYPDNYFDVVTSLQVVqnlvpddpaESLEARAGYLREMFRVLKPGGVAMVAT 311
                  46789******************9999988**************998888777654444444444444555689*********9322222222223334457888899999999999988 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.8e-09   4.5e-06      29     134 ..     192     311 ..     184     316 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 8.8e-09
    TIGR02072  29 ekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekksfDlivSnlalQWl..ddlse.......vlaelarvlkpgGllafst 134
                  +  ++  +k+Ld GcGtG++++ +l +   + l a D se+m++ a +k+        +   ++   ++    ++ fD+++S  ++Q l  dd++e        l+e++rvlkpgG+++++t
  MMETSP1174-20130828|19538_1 192 DL-NMAGKKMLDSGCGTGAFFEPMLGKGLSE-LHAYDPSESMISEALNKVAkfpscdrSKMKLSVAWSSSHYPDNYFDVVTSLQVVQNLvpDDPAEslearagYLREMFRVLKPGGVAMVAT 311
                  44.355689**************99999987.9****************986776654223333334444555677***********8755455441222222689*************998 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.5e-08   4.9e-05      45     148 ..     196     308 ..     183     340 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.5e-08
    TIGR02752  45 kgkkaldvccgtadw.aialaeavgkegevkgldfsenmlsvgkekvkda...klenvelvhgnamelpyednsfdyvtigfglrn.vpd........ylqvlkemarvvkpggkvv 148
                  +gkk ld  cgt+ +   +l++ +    e++  d se m+s + +kv++    ++++++l         y+dn fd vt    ++n vpd            l+em rv+kpgg  +
  MMETSP1174-20130828|19538_1 196 AGKKMLDSGCGTGAFfEPMLGKGL---SELHAYDPSESMISEALNKVAKFpscDRSKMKLSVAW-SSSHYPDNYFDVVTSLQVVQNlVPDdpaesleaRAGYLREMFRVLKPGGVAM 308
                  79**********986145566654...57999***********999987421155555555443.3568**********888888868983333222123479**********9643 PP

>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07   6.1e-05     110     198 ..     183     275 ..     175     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-07
    TIGR00452 110 wdrvlkhlsplk..grtildvGcgsGyylfrmvgeGaklvvGidpte.lvlkqfeavrklldndkraillplGieqlq.elkafdtvfslGvl 198
                  w+ + ++l +l+  g+ +ld Gcg+G ++  m+g+G   +  +dp+e ++   ++ v+k+   d+  + l++     + + + fd+v sl v+
  MMETSP1174-20130828|19538_1 183 WETMEPRLDDLNmaGKKMLDSGCGTGAFFEPMLGKGLSELHAYDPSEsMISEALNKVAKFPSCDRSKMKLSVAWSSSHyPDNYFDVVTSLQVV 275
                  777777777764339******************************983566789**********9988888887776625569*****99987 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06     0.001     282     366 ..     196     276 ..     184     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-06
    TIGR04074 282 garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqssltYrDkrlkgfdaavlvevie 366
                    +++lD GcG g+  + +l  k ++++ + d s + +++a +++      ++ + ++++  ss  Y D+ +   d ++ + v+ 
  MMETSP1174-20130828|19538_1 196 AGKKMLDSGCGTGAFFEPMLG-KGLSELHAYDPSESMISEALNKVAKFPSCDRSKMKLSVAWSSSHYPDNYF---DVVTSLQVVQ 276
                  45899************9886.7899*******************999999999***************875...5555555554 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.3e-05     0.032     153     229 ..     190     269 ..     187     294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.3e-05
    TIGR00406 153 lesldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen...leqkiegkaDvi 229
                  l++l+  +kk++D GcG G     +l  g ++++a+D     + +a++ + +    d+ ++kl+    + +  ++ +Dv+
  MMETSP1174-20130828|19538_1 190 LDDLNMAGKKMLDSGCGTGAFFEPMLGKGLSELHAYDPSESMISEALNKVAKFPSCDRSKMKLSVawsSSHYPDNYFDVV 269
                  799999***************************************99998887777777777766555555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1544.27
//
Query:       MMETSP1174-20130828|19548_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 632.45
//
Query:       MMETSP1174-20130828|19552_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|19551_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1187.90
//
Query:       MMETSP1174-20130828|19555_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|19553_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   97.8   0.2    2.2e-28   97.0   0.1    1.4  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
    1.2e-06   26.1   0.0    1.7e-06   25.6   0.0    1.2  1  TIGR03263 guanyl_kin: guanylate kinase
     0.0045   14.7   0.0       0.14    9.9   0.0    2.0  2  TIGR02258 2_5_ligase: 2'-5' RNA ligase


Domain annotation for each model (and alignments):
>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.1   1.6e-31   2.2e-28      30     172 ..      11     157 ..       2     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 1.6e-31
    TIGR02322  30 rvlfarRvitReadaggEdhealseeeFeeredegafalsWqahGlkYgip.veidewleaGkvvvvngsRavlpeararya...nllvvaitaspdvLaqRLaaRgResaeeieeRLarsaelaaeeadvttidnsgsleqagetl 172
                   + f++RvitR+ +  ++ +++++++ F+++e++g f  sW+ah  kY++   e++  l++Gk +v+n+sR+ ++ a +ry    ++ ++ ita++  L +RL +RgResa e+e+R+   a+    +++v+++ n+gs+e+ ++ +
  MMETSP1174-20130828|19553_1  11 AIYFMKRVITRDPEKCTDLEIPVEDDVFDAAEANGEFCFSWKAHDTKYALRrRELEAALQQGKRIVANVSRSIIQPALERYGpehEVYALLITAREATLEKRLFSRGRESAAEVEKRVRAGARCEPVGEHVVKVLNEGSIETGAHIV 157
                  589***********************************************7369***************************6566999****************************************************9876655 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.2e-09   1.7e-06      52     165 ..      33     147 ..      21     162 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.2e-09
    TIGR03263  52 vskeefeekikeeeflEwaevvgnyyGtskkeveealkegkdvlleidvqGakqvkkkl..peavsifilppsleeLeeRlkkRgtdseeviekRlekAkkelkaaeefdyvivNd 165
                  v+++ f++  +++ef    + +++ y   ++e+e+al++gk+++ ++     +   +++  ++ v+  +++   ++Le+Rl +Rg +s++++ekR++ A +  + + e+ + ++N+
  MMETSP1174-20130828|19553_1  33 VEDDVFDAAEANGEFCFSWKAHDTKYALRRRELEAALQQGKRIVANVSRSIIQPALERYgpEHEVYALLITAREATLEKRLFSRGRESAAEVEKRVR-AGARCEPVGEHVVKVLNE 147
                  5678899999******999*******************************999999998766678888999999*********************96.555566666666666665 PP

>> TIGR02258  2_5_ligase: 2'-5' RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0098        13     109     143 ..     194     227 ..     167     237 .. 0.69
   2 !    9.9   0.0    0.0001      0.14      74     130 ..     241     300 ..     208     344 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0098
    TIGR02258 109 laklglkkeerkftpHiTlarkkskekekvkells 143
                  l+++g++ +  +f +H+Tl+ + ++++++  ++ +
  MMETSP1174-20130828|19553_1 194 LTNNGIS-DVTAFPAHVTLGSSFEASQQQAIAVAR 227
                  4555655.6889********999888666655555 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0001
    TIGR02258  74 egvgvFgnekkprvlwlgveeseeLtq...LqeelekelaklglkkeerkftpHiTlark 130
                  e vgv   e+  + ++l+++ ++ L+q   L++++++ ++++g ++e+r + pH  l   
  MMETSP1174-20130828|19553_1 241 EVVGVSHGEELHKCVFLDMRLTDALQQahlLATDISSPFRAAGEERESRSYLPHASLVYA 300
                  44555555566777788877777776555599**********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1240.00
//
Query:       MMETSP1174-20130828|19556_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    8.4   6.4       0.23    8.2   4.5    1.0  1  TIGR00414 serS: serine--tRNA ligase
        1.7    5.5  11.4          2    5.3   7.9    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        2.7    4.9   8.1          3    4.8   5.6    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.5   0.00017      0.23      39     116 ..       9      86 ..       2      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00017
    TIGR00414  39 lkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpv 116
                    k++ ++e l+ + + +  ++++++ ++   + +l+ e+++ k el++++ e++e++e+ ++ + +  + v e++  
  MMETSP1174-20130828|19556_1   9 AAKAEAEVEALKTELETVRTAVQEARSRQDVVAGPLRLEIQRVKDELSAAHREVREAQEKERRAMKEKDESVREETKT 86 
                  5688999*****************99888877888*******************999998887777666666666554 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.9    0.0014         2      28     106 ..      10      89 ..       2      94 .] 0.41

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0014
    TIGR01554  28 eeekkekdalkaeidkleaeierleea....aaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaeeakalst 106
                  +++++e++alk+e++ + +++++++++    a ++  + ++ +++ +++ +e ++++e+    r++++ +d++  ee+k+ +t
  MMETSP1174-20130828|19556_1  10 AKAEAEVEALKTELETVRTAVQEARSRqdvvAGPLRLEIQRVKDELSAAHREVREAQEK---ERRAMKEKDESVREETKTTTT 89 
                  33333444455555555555555555554442222222222222222222222222221...455666666666666333333 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.6    0.0022         3      73     144 ..      14      85 ..       3      94 .] 0.40

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0022
    TIGR03752  73 kelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaa 144
                   e+++l++e e++++  ++ ++r++ v   ++ +++ +k el++++++++e+q+k +++++e  + +++ ++
  MMETSP1174-20130828|19556_1  14 AEVEALKTELETVRTAVQEARSRQDVVAGPLRLEIQRVKDELSAAHREVREAQEKERRAMKEKDESVREETK 85 
                  344444444444444444444444444444444444444444444444443333333333333333321111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       416  (0.101414); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 335.32
//
Query:       MMETSP1174-20130828|19554_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1197.00
//
Query:       MMETSP1174-20130828|19559_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.9   0.0      0.018   12.7   0.0    1.0  1  TIGR01004 PulS_OutS: lipoprotein, PulS/OutS family


Domain annotation for each model (and alignments):
>> TIGR01004  PulS_OutS: lipoprotein, PulS/OutS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.3e-06     0.018      11      51 ..       2      42 ..       1      46 [. 0.93

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.3e-06
    TIGR01004 11 sllvvvslsgcqkntasrkaaavpaseqleqlasvvaaary 51
                 ++lvv+s+ +  + +a  ++++ p+s  le la + a++ y
  MMETSP1174-20130828|19559_1  2 AMLVVLSFQANPETKAESSSSSFPPSSSLELLADLYAGSMY 42
                 589999999999***************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|19561_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 684.92
//
Query:       MMETSP1174-20130828|19562_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 711.80
//
Query:       MMETSP1174-20130828|19564_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 764.44
//
Query:       MMETSP1174-20130828|19557_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-23   80.6   0.0    6.3e-11   39.6   0.0    3.0  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.5e-14   6.3e-11       2     103 ..       4     111 ..       3     115 .. 0.80
   2 !   36.4   0.0   1.5e-13     6e-10     249     358 ..     235     352 ..     215     419 .. 0.71
   3 ?    0.3   0.0     0.012        51     404     433 ..     440     467 ..     414     503 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.5e-14
    TIGR03417   2 rpnililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigv.ydnaaefas......diptyahylraaGyktalsGkmhf 103
                   pnil+l+vd +  + +   ++      Pn++ la+++v++++ y +  lc+Para+ll+Gk P r+g  +++  e +s      +      yl++aGykt + Gk h+
  MMETSP1174-20130828|19557_1   4 APNILVLLVDDMGWNDVGYNSNDLQGLSPNIDMLASQGVKLQQYY-SQHLCTPARAALLTGKYPIRLGLqHEEVIEPTSpfglplKEKLLPEYLSEAGYKTYMLGKWHL 111
                  69**********9998888667666789*************9866.568******************9724455554441111114556889**************996 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1.5e-13
    TIGR03417 249 rrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdm.lG...erGlwy.kmsffegsarvPllvaaperleagrveaavstv....dllPtlvelagveleevlpaldGe 358
                   +arr +   +  +d+++G+l e+le+ ++ d+t+++f+sd G   lG   +  l   k   feg+ rvP +v++p  l a  + ++ s +    d lPt+++la++e+ +++  ++  
  MMETSP1174-20130828|19557_1 235 YKARRKFAKLVLTLDHNVGSLYETLESRGMWDNTVMIFASDNGACnLGggyNTPLKGgKHFLFEGGLRVPAFVSSPL-LPADSMGNTYSGLmhvsDWLPTIMHLARIETPSDIDGVNQW 352
                  3688888888999******************************8534422222333225667**************9.8877777666643333599**********998887744433 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.012
    TIGR03417 404 eqlydleadPkelenlaeepehaetlealr 433
                  + l++++adP+e  nl +   ++e  e+lr
  MMETSP1174-20130828|19557_1 440 NFLFNITADPTEEVNLFSV--YHEIAETLR 467
                  579************9754..333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1559.31
//
Query:       MMETSP1174-20130828|19566_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 563.15
//
Query:       MMETSP1174-20130828|19567_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|19569_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|19571_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   22.0   0.0    3.4e-05   21.4   0.0    1.2  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0033   14.5   0.0      0.012   12.6   0.0    1.8  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.6e-08   3.4e-05      43     121 ..      19     114 ..       2     156 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.6e-08
    TIGR01250  43 eslkellke.gvevilYDQLGsgkSdq..Pddsd..............eklltidrfvdEleevrekLaldk..fyllgqSwGglLaqeYalkyqqhl 121
                      + + e g++++l DQ G+g S+   P                    +++ d +v + e vr+ L  d   + llgqS+Gg   ++Y   ++  l
  MMETSP1174-20130828|19571_1  19 SGWMAAASEkGFRILLLDQRGTGLSSAltPA--SlvrqhpsaeaqaehLSFFRADSIVRDCEVVRRSLCGDDtkLTLLGQSFGGFVMLTYLSLFPGSL 114
                  4444444445***********9999852243..234566678888877679*****************9987779*************9986665555 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.8e-06     0.012      51     142 ..      27     136 ..       1     176 [. 0.63

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.8e-06
    TIGR01249  51 pevyrivlldqrGaGks...........kphaileen.....ttwdlvadieklrekl..kikkWlvfGGsWGstlalayaqkhPekvtklvlrgifllrkkelewlyeg 142
                   + +ri+lldqrG+G s           +p a ++ +      ++ +v d e +r+ l  + +k +++G s+G  + l+y    P   ++ ++   +    +e+e++y +
  MMETSP1174-20130828|19571_1  27 EKGFRILLLDQRGTGLSsaltpaslvrqHPSAEAQAEhlsffRADSIVRDCEVVRRSLcgDDTKLTLLGQSFGGFVMLTYLSLFPGSLERCLFTFGLAPVMREVEEVYAA 136
                  4569***********88333221121111222222211222246889*********99444678999*************999998887654432222334455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.49
# Mc/sec: 1142.11
//
Query:       MMETSP1174-20130828|19574_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1010.22
//
Query:       MMETSP1174-20130828|19573_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1483.44
//
Query:       MMETSP1174-20130828|19577_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|19578_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 190.22
//
Query:       MMETSP1174-20130828|19584_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|19583_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-40  136.5   0.0    2.7e-38  129.6   0.0    2.1  2  TIGR04026 PPOX_FMN_cyano: PPOX class probable FMN-dependent enzyme, alr4036 family
    3.6e-07   27.8   0.0    5.7e-07   27.1   0.0    1.2  1  TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> TIGR04026  PPOX_FMN_cyano: PPOX class probable FMN-dependent enzyme, alr4036 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   1.3e-41   2.7e-38       3     127 ..      33     166 ..      31     183 .. 0.91
   2 !    5.2   0.0     0.002         4     141     167 ..     202     228 ..     194     256 .] 0.77

  Alignments for each domain:
  == domain 1    score: 129.6 bits;  conditional E-value: 1.3e-41
    TIGR04026   3 pwrselkralkrersspsarylqLatvaeegkprvRtvVfRgf.ed....enqlelitDarSeKieeleknpaaeicWyftktreqfRlsgklklvkaeeeeeelqaa....WqkLsdaaraqfaWpePgeple 127
                   w+s+++r+  + r+     ++q+atv++eg+pr+RtvVfRgf ++    e+ l++itD rSeK+++++++pa+e++W+f kt eq+R++g+l+lv a++ + elqaa    W +Lsd+ar+qf+W  Pg +++
  MMETSP1174-20130828|19583_1  33 AWQSRIQRSIAKSRKIRGGNFVQIATVDPEGRPRCRTVVFRGFlSTeaggEDALRMITDLRSEKVHQVASSPACEMVWWFGKTSEQYRIAGELQLVGADYPPGELQAArrqqWGNLSDKAREQFYWTCPGMEIA 166
                  6******************************************7432233589***********************************************999998878888******************9876 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.002
    TIGR04026 141 elpenfvlllleieevdhLeLrkepqk 167
                  ++p++f+l+ll + ev +L+L+++  +
  MMETSP1174-20130828|19583_1 202 PPPDTFLLMLLWPIEVKYLRLTDNFAQ 228
                  689******************998543 PP

>> TIGR00558  pdxH: pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.8e-10   5.7e-07      41     118 ..      43     126 ..      26     133 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.8e-10
    TIGR00558  41 aieakleepeavtlstvdeegrpssrivLlkel..derG....fvfytnygsrkgeqleenPnaalvffWkelerqvrveGkve 118
                  a++ k+   + v+++tvd egrp  r v+++ +  +e G    + + t++ s k +q+++ P   +v+++ +   q r+ G+ +
  MMETSP1174-20130828|19583_1  43 AKSRKIRGGNFVQIATVDPEGRPRCRTVVFRGFlsTEAGgedaLRMITDLRSEKVHQVASSPACEMVWWFGKTSEQYRIAGELQ 126
                  33367778899*******************986443333333399***********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 866.39
//
Query:       MMETSP1174-20130828|19588_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1174-20130828|19591_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 200.11
//
Query:       MMETSP1174-20130828|19589_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 954.09
//
Query:       MMETSP1174-20130828|19587_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-22   76.4   3.8    2.8e-14   50.6   1.6    4.1  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.031   10.7   0.0      0.066    9.6   0.0    1.5  2  TIGR02902 spore_lonB: ATP-dependent protease LonB


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.2e-06     0.013      42      91 ..     121     170 ..     114     184 .. 0.80
   2 !    9.1   0.0   5.7e-05      0.12     126     182 ..     227     280 ..     221     286 .. 0.86
   3 !   50.6   1.6   1.4e-17   2.8e-14     193     353 ..     316     514 ..     311     521 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.2e-06
    TIGR02928  42 nvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqv 91 
                  ++ ++Gk+GtGKt+ +k  + e+ +   ++d+ v++ +vn    +   ++
  MMETSP1174-20130828|19587_1 121 SLYVSGKPGTGKTLSVKWGVTEALKTLPSSDSCVNVKQVNGSSFTNPIDL 170
                  56789***********997777777778889*********8876665555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 5.7e-05
    TIGR02928 126 eredsliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigisndlkfleel 182
                  +    l++++DE D+l+k+++  +L +L      + + ++++ +igi n +++ + l
  MMETSP1174-20130828|19587_1 227 KIRRCLVLIVDEADHLIKGKDHGVLETLFHW---SMAPGSPLVLIGIANTMDLPQRL 280
                  567789***********************99...6777899********99876655 PP

  == domain 3    score: 50.6 bits;  conditional E-value: 1.4e-17
    TIGR02928 193 eeivFppYdaeeLrdILeeRaekafkd...............gvlddeviplvaalaaqehGdaRkAidlLreageiAeee.......gsek.......vteehvekAqekiekerl.lelirglpthsklvLlaiaalakk.....eedevrtgevyevYkevaee...lgvdpltqrrisdllnelemlglveaeek 353
                  + +vF+pYd++eL+++L+eR+++a ++               +v+++ +++l+   +a  +GdaR A+d+L  a + A ++       g e+       vt eh++ A ++ +k  l  + i++lp++ +lvL+++aa+a++     +  +v+++++y++ +++  +   lg  +l + ++ d++++le +gl++  ++
  MMETSP1174-20130828|19587_1 316 RMLVFKPYDKDELKQVLKERVDRASSSlessssssqqgtpfrEVVNEVALKLCTCKVAAHTGDARDALDMLDCAMQEAVRDlekrkleGTEEvnctkalVTMEHMKVAVKSSKKGSLsNDNINDLPENTRLVLYVAAAVAERqtscvKAPFVTSRNIYDALTHLQMSglaLGIRKLDASTFEDMVAQLESVGLIKYITT 514
                  6789*****************887542222222233333333699******************************99976422222223332222223389********999876651689**************9999998666766677788888888887765333379999*******************86544 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.25     5e+02      90     113 ..     123     146 ..     116     151 .. 0.80
   2 ?    9.6   0.0   3.2e-05     0.066     245     307 ..     307     365 ..     287     434 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.25
    TIGR02902  90 iiyGppGvGktaaarlvleeakks 113
                   + G pG Gkt + +  + ea k+
  MMETSP1174-20130828|19587_1 123 YVSGKPGTGKTLSVKWGVTEALKT 146
                  57799******9999988888775 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 3.2e-05
    TIGR02902 245 eeippalrsrcveiffrelekeeikeiakkaaekiglslekealeliakyasnGreavnlvql 307
                  + +p+a rsr +   f++ +k+e+k++ k+ +++   sle+++    ++  +  re+vn v l
  MMETSP1174-20130828|19587_1 307 QRLPAAPRSRML--VFKPYDKDELKQVLKERVDRASSSLESSSSS--SQQGTPFREVVNEVAL 365
                  457899999975..79***********************998876..4556777888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.60
# Mc/sec: 1304.49
//
Query:       MMETSP1174-20130828|19594_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1153.96
//
Query:       MMETSP1174-20130828|19597_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 362.32
//
Query:       MMETSP1174-20130828|19595_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-20   72.0   0.8    3.4e-17   60.4   0.1    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    8.8e-20   69.2   0.0    6.3e-10   36.6   0.0    2.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.7e-13   46.5   0.0    8.6e-06   23.4   0.0    3.5  4  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.7e-10   36.7   0.0    8.6e-06   22.3   0.0    2.6  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    7.1e-08   29.5   0.0      2e-07   28.0   0.0    1.7  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.9e-06   24.2   0.0    0.00025   17.8   0.0    2.3  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    8.4e-06   23.5   0.0     0.0047   14.4   0.0    2.5  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.7e-05   21.9   0.3       0.69    6.6   0.0    3.5  4  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.9e-07   0.00025     212     281 ..     205     277 ..     100     303 .. 0.71
   2 !   60.4   0.1   6.7e-20   3.4e-17     102     330 ..     195     420 ..     179     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.9e-07
    TIGR01622 212 dipnsiadlkLYvGnlhfnitEqeLrqiFepFG.eielvqlqkD....petGrskGyGFiqFsdaeeakeAlekl 281
                    p+ +  + L v nl f   E +Lrq+Fe+ G ++ +v ++k     ++   s GyGF++ ++     +Al++l
  MMETSP1174-20130828|19595_1 205 VSPDDMDSTCLHVKNLNFTSDETQLRQLFEAKGiKVRSVSIPKKihhrSKDKVSAGYGFVELKEP--VGRALQRL 277
                  4577778889***********************889***9877511114444567*****98753..34445544 PP

  == domain 2    score: 60.4 bits;  conditional E-value: 6.7e-20
    TIGR01622 102 rekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvg.kvrdvrl...ikDrnSrr.SkGvaYvEFydvesvqlAla.ltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vteesdaslaskfedsfdeseqsgldlnteer 330
                   e    l+  + +++ D+    v +l+   +e +l+  F+  g kvr v +   i+ r   + S G ++vE +  e v  Al+ l+   l g  + +  s     ++ +        +p++++++kL   n+ f+    eLr++F  FG++++++++  p++ + +G+ F++++ a ea  A+e l    l GR + +  a++   + ++as ++  +ds +++++ +++ +   +
  MMETSP1174-20130828|19595_1 195 TEALASLPTTVSPDDMDSTCLHVKNLNFTSDETQLRQLFEAKGiKVRSVSIpkkIHHRSKDKvSAGYGFVELK--EPVGRALQrLQSAVLDGHTLELSVSRTKGAKQGA------SIKPQAAGQTKLVCRNVAFQANRGELRELFTNFGQLKSLRMPVKPNG-QHRGFAFVEYTTAHEALGAMESLSATHLYGRHLVMEWAEEkALGDTAASKDKAIQDS-KKNARVTKNHKRATK 420
                  3333457888899************************************8744466665544489******97..5799999857788888999888888765444444......234778999************************************98.*************************************99967778888888888886.777776666554444 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.4e-10     7e-08     175     364 ..     102     295 ..      93     301 .. 0.76
   2 !   36.6   0.0   1.2e-12   6.3e-10     287     364 ..     312     389 ..     293     423 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.4e-10
    TIGR01628 175 ekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaa...tgkilyVgraqkraeRe.aelkakfeelkqe.rkekaqgvNlYvkNlddtvddekLrelFeefG.eitSakv.....mldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrk 364
                  ++  t + vKnl+ s +  +l +l +k+G +   + +  +     + a v + +a dAk+A +++  k+ + +    +   l  g+ ++ +++e  +l +    l +    +    + l vkNl+ t d+ +Lr+lFe  G ++ S+++      +++ ++S g+GFV  +++    +A++ l+  +l+g+ L +++ + k
  MMETSP1174-20130828|19595_1 102 KRSDTMILVKNLPSSADGMELTKLMGKHGAMNRFVLAPSK-----TVAIVDFVQATDAKRAFQAIAFKRYQHVPlylEWAPLVDGKKRPSNQKEeSVLTEALASLPTTvSPDDMDSTCLHVKNLNFTSDETQLRQLFEAKGiKVRSVSIpkkihHRSKDKVSAGYGFVELKEP--VGRALQRLQSAVLDGHTLELSVSRTK 295
                  45568899**********************9988876543.....46789999999***99999998887744332256667777777655554146666666665441457788999***********************7799987733222245678899*****98766..67999999999999998877776655 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 1.2e-12
    TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrk 364
                   l  +N+  + +  +LrelF +fG+++S ++ ++++++ +gF FV ++++ eA  A++ l  + l g+ L +  A+ k
  MMETSP1174-20130828|19595_1 312 KLVCRNVAFQANRGELRELFTNFGQLKSLRMPVKPNGQHRGFAFVEYTTAHEALGAMESLSATHLYGRHLVMEWAEEK 389
                  455666666666777777777777777777777777777777777777777777777777777777777777777665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.03        15     263     298 ..      99     135 ..      10     165 .. 0.76
   2 ?    0.3   0.0      0.17        89      47      66 ..     143     162 ..     106     188 .. 0.60
   3 !   17.1   0.0   1.3e-06   0.00069     254     347 ..     196     294 ..     180     299 .. 0.72
   4 !   23.4   0.0   1.7e-08   8.6e-06     255     343 ..     296     384 ..     278     391 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.03
    TIGR01661 263 aasdgagycifvynlspdtdeavl.qlfgpfGavqsv 298
                  ++s+ +   i+v nl + +d   l +l+g+ Ga++  
  MMETSP1174-20130828|19595_1  99 SKSKRSDTMILVKNLPSSADGMELtKLMGKHGAMNRF 135
                  3344556789999999999988877999999998764 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.17
    TIGR01661  47 yGfvnyvreedaekavnsln 66 
                     v++v+  da++a +++ 
  MMETSP1174-20130828|19595_1 143 VAIVDFVQATDAKRAFQAIA 162
                  33455555555555555555 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.3e-06
    TIGR01661 254 aglaaga.qiaasdgagycifvynlspdtdeavl.qlfgpfGa.vqsvkiirdlt....tnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktn 347
                   +la+ + +++ +d    c+ v nl   +de+ l qlf   G  v+sv i + ++     +   Gygfv +   +    a++ l    l +++l +s+  +
  MMETSP1174-20130828|19595_1 196 EALASLPtTVSPDDMDSTCLHVKNLNFTSDETQLrQLFEAKGIkVRSVSIPKKIHhrskDKVSAGYGFVELK--EPVGRALQRLQSAVLDGHTLELSVSRT 294
                  444444304455677789***************99****9995499998877664111033457*****996..456789999999999999999887655 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 1.7e-08
    TIGR01661 255 glaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                  g  +ga+i  + +    +   n++ +++   l  lf++fG ++s+++   +   + +G++fv  t  +ea  a++sl  ++l +r l + 
  MMETSP1174-20130828|19595_1 296 GAKQGASIKPQAAGQTKLVCRNVAFQANRGELrELFTNFGQLKSLRMPVKP-NGQHRGFAFVEYTTAHEALGAMESLSATHLYGRHLVME 384
                  444455555433323346667899888888776899999999999997777.56789999999999999999999999999999988665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.29   1.5e+02     286     327 ..      95     136 ..      82     141 .. 0.76
   2 !   11.8   0.0   2.6e-05     0.013     227     350 ..     144     271 ..     129     308 .. 0.71
   3 !   22.3   0.0   1.7e-08   8.6e-06     292     376 ..     306     389 ..     288     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.29
    TIGR01642 286 lvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFn 327
                  +++s  +  s+  + ++nLP   +   +  L+ + G +  F 
  MMETSP1174-20130828|19595_1  95 TSSSSKSKRSDTMILVKNLPSSADGMELTKLMGKHGAMNRFV 136
                  355556667777899999999999999999999999888775 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 2.6e-05
    TIGR01642 227 aflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedk..lyignLPldlkddqvkeLLesFG.dLkaFnliKdl....atGlsKGyaFceykdssv 350
                  a+++f  v+ +    a+++i ++ +  ++    ++ P+ +++  +s+++ +  l     +  +++++d+ d   l+++nL +  ++ q+++L e  G  +++  + K +    ++  s Gy+F+e k++  
  MMETSP1174-20130828|19595_1 144 AIVDF--VQATDAKRAFQAIAFKRYQ-HVPLYLEWAPLVDGKKRPSNQKEESVLTEALASLPTTVSPDDMDStcLHVKNLNFTSDETQLRQLFEAKGiKVRSVSIPKKIhhrsKDKVSAGYGFVELKEPVG 271
                  55555..4555555567777777653.455567899999999999988877777777577889999999875449**********************779***9999862222567899*******99853 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 1.7e-08
    TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnl.iKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvg 376
                     ++ kl   n+ ++ +   ++eL ++FG+Lk+  + +K   +G+ +G+aF+ey  +  +  A+++L   +l+++ L +  A   
  MMETSP1174-20130828|19595_1 306 QAAGQTKLVCRNVAFQANRGELRELFTNFGQLKSLRMpVK--PNGQHRGFAFVEYTTAHEALGAMESLSATHLYGRHLVMEWAEEK 389
                  566778899999999999999***************9555..57**********************************98877554 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.82   4.2e+02     214     250 ..     226     267 ..     217     287 .. 0.66
   2 !   28.0   0.0   3.9e-10     2e-07     110     204 ..     315     411 ..     289     426 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.82
    TIGR01645 214 eedlksvfeafG.eivkcklara....ptlrkhkGfGflefe 250
                  e+ l+ +fea G ++ +  + ++    +  +   G+Gf+e +
  MMETSP1174-20130828|19595_1 226 ETQLRQLFEAKGiKVRSVSIPKKihhrSKDKVSAGYGFVELK 267
                  677888888888444455444441000333445689998865 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3.9e-10
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg..rPsnlpqaqpiidevqeeakkfnri 204
                     + f+ +   lr+ f+ fG +ks+ m   p  ++h+gfafve      al a+e++ ++ l Gr l ++    + l+ +    d+  +++kk  r+
  MMETSP1174-20130828|19595_1 315 CRNVAFQANRGELRELFTNFGQLKSLRMPVKPN-GQHRGFAFVEyTTAHEALGAMESLSATHLYGRHLVMEwaEEKALGDTAASKDKAIQDSKKNARV 411
                  346789999999******************996.789*******8888999****************9887555667888888888888888887776 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0071       3.6     225     321 ..     205     309 ..     193     324 .. 0.71
   2 !   17.8   0.0   4.8e-07   0.00025      74     122 ..     326     374 ..     316     384 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0071
    TIGR01648 225 vdedvmakvkilyvrnlmletteeiieksfse..fkpGavervkki....rd.....yafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakg 321
                  v +d m +   l+v+nl  +  e  +++ f+   +k  +v   kki    +d     y fv +  +e   +a++ l   +l+G ++e+ +++    ++ +  +  a g
  MMETSP1174-20130828|19595_1 205 VSPDDMDS-TCLHVKNLNFTSDETQLRQLFEAkgIKVRSVSIPKKIhhrsKDkvsagYGFVEL--KEPVGRALQRLQSAVLDGHTLELSVSRTKGAKQGASIKPQAAG 309
                  55666665.479999999999999999988643366666766688833332333333566644..577789****************999988776666555555555 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 4.8e-07
    TIGR01648  74 elvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnny 122
                  el  lf + G++  lr+ +  +G+ rG+afv ++  +ea  a+  l + 
  MMETSP1174-20130828|19595_1 326 ELRELFTNFGQLKSLRMPVKPNGQHRGFAFVEYTTAHEALGAMESLSAT 374
                  78889**********************************9999988765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0034       1.7      94     168 ..      92     160 ..      81     166 .. 0.80
   2 !   14.4   0.0   9.1e-06    0.0047     138     256 ..     248     372 ..     204     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0034
    TIGR01659  94 gsggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraiks 168
                  +s  s + +++ s+t ++v  lp      el  l+   g +n            s   a+vdf   +d++ra ++
  MMETSP1174-20130828|19595_1  92 ASSTSSSSKSKRSDTMILVKNLPSSADGMELTKLMGKHGAMNRF------VLAPSKTVAIVDFVQATDAKRAFQA 160
                  55666777888999999999999999999999999999998864......3344556799999999999999876 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 9.1e-06
    TIGR01659 138 rimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpg....gesik.....dtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                  +i    k   s gy+fv++       ra++ l+   +  + l +s +r      g sik     +t l   n++      +l  +f  +g++     +  k  g+ rg afv +    ea  a+ +l 
  MMETSP1174-20130828|19595_1 248 KIHHRSKDKVSAGYGFVELKEP--VGRALQRLQSAVLDGHTLELSVSRTKgakqGASIKpqaagQTKLVCRNVAFQANRGELRELFTNFGQLKSL-RMPVKPNGQHRGFAFVEYTTAHEALGAMESLS 372
                  455566888999*****99765..569999999999999999999988751222567885444468899999999999999*********98544.3567999************9999988887775 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0019      0.96       4      57 ..     107     160 ..     104     172 .. 0.89
   2 !    4.6   0.0    0.0057       2.9     415     452 ..     212     249 ..     209     295 .. 0.78
   3 ?   -0.7   0.0      0.22   1.1e+02     341     385 ..     264     306 ..     253     314 .. 0.78
   4 !    6.6   0.0    0.0013      0.69       8      98 ..     316     409 ..     311     424 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0019
    TIGR01649   4 VvHvRnlpeevveadlvelliefGkvsyvlvlkgkrqAlvEfedeesAkalVnf 57 
                   + v+nlp++    +l +l+ ++G +   ++ + k  A+v+f + + Ak + + 
  MMETSP1174-20130828|19595_1 107 MILVKNLPSSADGMELTKLMGKHGAMNRFVLAPSKTVAIVDFVQATDAKRAFQA 160
                  57899*************************************999999877655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0057
    TIGR01649 415 satLHlsNiPlsvsEedlkelfaekgvkvkafkvFpkd 452
                  s+ LH  N+  + +E +l +lf+ kg+kv ++ + +k 
  MMETSP1174-20130828|19595_1 212 STCLHVKNLNFTSDETQLRQLFEAKGIKVRSVSIPKKI 249
                  789*************************9999875543 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.22
    TIGR01649 341 vemadpqqaqlalthLdkvklfgkklrvavSkqeavqlpkefqld 385
                  ve+ +p  + +al+ L+   l g++l++ vS+ +  +++ + +++
  MMETSP1174-20130828|19595_1 264 VELKEP--VGRALQRLQSAVLDGHTLELSVSRTKGAKQGASIKPQ 306
                  555554..679********************99988777776554 PP

  == domain 4    score: 6.6 bits;  conditional E-value: 0.0013
    TIGR01649   8 RnlpeevveadlvelliefGkvsyvlv.lk....gkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgnakalsdvesvssg 98 
                  Rn+  +   ++l el ++fG++  + + +k    ++  A+vE+ + + A  + +  +++  ++ Gr++ ++++ +k l     +k+   ++s +++
  MMETSP1174-20130828|19595_1 316 RNVAFQANRGELRELFTNFGQLKSLRMpVKpngqHRGFAFVEYTTAHEALGAMESLSAT--HLYGRHLVMEWAEEKALGDTAASKDKAIQDSKKNA 409
                  66666667777777777777776654423312113345777777777776666655554..45577777777777777666643444444455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.19s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 998.02
//
Query:       MMETSP1174-20130828|19596_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 2030.30
//
Query:       MMETSP1174-20130828|19598_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|19593_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1548.33
//
Query:       MMETSP1174-20130828|19603_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1174-20130828|19599_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1439.60
//
Query:       MMETSP1174-20130828|19608_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|19613_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 746.03
//
Query:       MMETSP1174-20130828|19616_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|19615_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 552.51
//
Query:       MMETSP1174-20130828|19614_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1213.04
//
Query:       MMETSP1174-20130828|19612_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|19618_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 889.98
//
Query:       MMETSP1174-20130828|19620_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-87  290.6   0.0      1e-86  289.1   0.0    1.6  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00026   18.4   0.0     0.0005   17.4   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   0.0   4.9e-90     1e-86      27     427 ..     115     535 ..      99     540 .. 0.88

  Alignments for each domain:
  == domain 1    score: 289.1 bits;  conditional E-value: 4.9e-90
    TIGR01982  27 sllllakllakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlveg...keVavKvlRPgiekkieadikllellaklvekllpeakrl..rptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgfler.....d......ykrvaevhleagyvpsdtd...laeleq.airavgepivgkplkeisigklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklik 427
                  +++ ++k     ++++a+ ++++e +r+ l +lGP+f+K+GQvlstR+D++ +e+++ L+ Lqd+vp+fd+++ar++ ++el+   v+elF++f+ekP+AaAS++Qvh+A+l+++   ++Va+Kv+R g+++ ++ d+  l++la+l++k+ p+++    + +++ +e ++ l  E+d+  Ea+na +++e fkn + ++ P vy++l + rvlt+e+++  +++d++k++e Gld++ l+++ +  fl+qv++ g+FH D+HpGN+ v+k+g++++ D+G++ +l+++ r  + ++ ++++e      d      +k+ +  + ++g++ +  d   ++++++  ir++ ++  g+   +i+ +++ a+l  +te    + ++ ++++ +++  v+G+g+ l+ d+d+ k+++p++++l++
  MMETSP1174-20130828|19620_1 115 KVVKVRKIKDDPAAKSAASTATAEFIRDGLLRLGPTFVKFGQVLSTRTDVFSKEYIDVLKSLQDDVPAFDGQKAREITAEELKVdDVSELFSDFSEKPIAAASLGQVHTAFLKKDnatTKVAIKVQRAGLKELFDVDLVNLKKLAELLDKFDPKSDGAdrDWVNIYEESSRLLYLEIDYLNEARNAIRFAEDFKNTPWVRTPDVYFDLSTPRVLTMEFVETEKLTDIAKMDELGLDKNLLSKRTADAFLTQVVQTGYFHCDPHPGNLAVDKEGNLVFFDYGMMDELKPNVRLGFQNLCFALFEGgpfidDlalsekAKQFVLALGQMGVLAKGADqlaVEKFARfCIRNFKDQQLGRKGANIK-STIGADLQTLTEADVFRFPSTFTFIFRAFASVDGIGKGLNKDFDIGKLSQPYIEELVE 535
                  4555555555555666667899999***********************************************************99****************************99999********************************998875411689999**********************************************************************************************************************************9999987422222222211144555555566777665551225677652579999999999999998.455677777788888899************************************9986 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-07    0.0005      59     136 ..     313     397 ..     294     407 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.5e-07
    TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekel....ell..kevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLg 136
                  v+tP vy+       ++me +e +kl d+ + +el    +ll  +++   + ++ ++g  h D+++ N+ v k+++l++ D+G+ 
  MMETSP1174-20130828|19620_1 313 VRTPDVYFDLSTPRVLTMEFVETEKLTDIAKMDELgldkNLLskRTADAFLTQVVQTGYFHCDPHPGNLAVdKEGNLVFFDYGMM 397
                  89999999888999****************99888888844411345567899******************66899*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 1741.74
//
Query:       MMETSP1174-20130828|19629_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|19635_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1707.06
//
Query:       MMETSP1174-20130828|19638_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|19640_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1279.56
//
Query:       MMETSP1174-20130828|19642_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1093.62
//
Query:       MMETSP1174-20130828|19645_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 654.67
//
Query:       MMETSP1174-20130828|19650_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1028.74
//
Query:       MMETSP1174-20130828|19654_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.0   0.1      0.014   11.9   0.1    1.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.4e-06     0.014      72     116 ..       8      52 ..       4      56 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.4e-06
    TIGR00990  72 kerrkrkdaekeaekkaeekkstapkaaavesadelpeidessvv 116
                   er k k++e ++ek ++ k +   k++ +e+++   +id +s +
  MMETSP1174-20130828|19654_1   8 RERCKCKQSEFDSEKMTQLKMPPHVKSSKIETTSASDDIDWASDI 52 
                  6999************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|19659_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 586.62
//
Query:       MMETSP1174-20130828|19662_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1174-20130828|19664_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-11   39.9   0.0    8.1e-11   39.7   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     2e-14   8.1e-11     222     276 ..      45      99 ..      32     112 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2e-14
    TIGR00406 222 iegkaDvivaNilAevikellsqivrLvkegGllilSGileeqaqsvleayeqaf 276
                  +  ++Dv vaNilA ++ +l++++    +egG l lSG+++ qaqsv++a+   f
  MMETSP1174-20130828|19664_1  45 MGVQFDVTVANILAPILIKLAPELASYTREGGVLALSGVITAQAQSVVNAFLPYF 99 
                  55789********************************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|19663_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1198.60
//
Query:       MMETSP1174-20130828|19665_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|19668_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1174-20130828|19670_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1174-20130828|19673_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1117.51
//
Query:       MMETSP1174-20130828|19674_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|19676_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1174-20130828|19680_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.51
# Mc/sec: 217.39
//
Query:       MMETSP1174-20130828|19678_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.53
# Mc/sec: 552.86
//
Query:       MMETSP1174-20130828|19677_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.078    8.8  27.9      0.015   11.2  16.4    1.8  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  16.4   3.7e-06     0.015     460     627 ..     505     663 ..     462     676 .. 0.77
   2 ?   -2.5   0.1     0.049     2e+02      68     112 ..     695     737 ..     692     747 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.7e-06
    TIGR00870 460 ekvllfdpteieealfafalvlswlnll.yiargnqhlGplqimlgrmilrDllrFlfiylvvLlaFavalvqlykyydekklneesslkpirceiee..naystlletlleLFwaii.GlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeeade 627
                  ++    d +  +  l  +al   +++ll y+ +  +++  +++m   m    ++ Fl++++v L+ F+  +++  +   ++  + +          ++  n y + ++ +  L+  ++ G  d+ ++++++t   ++l f ++ vi +++++N LIA++++ y+   + + e
  MMETSP1174-20130828|19677_1 505 THSISGDYNSTYINLVTIALFGLYIKLLgYMKSTHAKTSAFVVMFFAMFD-AVFVFLIVMVVLLFMFGHIFYFRNFGSIAEDFGDDL---------DDglNPYYSWVNMFNDLYMLSFmGEFDY-AYYEEDT--GTKLFFIIFIVIIILIMMNVLIAIVSEAYEDCMATSYE 663
                  4444445667889999***********9555566789***********99.9********************999988888888666.........33479*************8776155555.4444554..4789999**********************987766644 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.049
    TIGR00870  68 neelteLllkkeegevGdalLhaiskelvdaveailllllkaark 112
                  +++++eLl+ +  + +Gd +L    +++ d+v+++  l+++ +r+
  MMETSP1174-20130828|19677_1 695 VDNVIELLKDE--VVTGDRALESRTERETDVVYQMNILKKEVKRE 737
                  56677777665..69*****************9998888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:01.34
# Mc/sec: 739.73
//
Query:       MMETSP1174-20130828|19685_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 623.53
//
Query:       MMETSP1174-20130828|19687_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.43
# Mc/sec: 211.80
//
Query:       MMETSP1174-20130828|19688_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 149.59
//
Query:       MMETSP1174-20130828|19689_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0077   13.4   0.0      0.008   13.3   0.0    1.1  1  TIGR01128 holA: DNA polymerase III, delta subunit
  ------ inclusion threshold ------
      0.037   11.1   0.0       0.04   11.0   0.0    1.0  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01128  holA: DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.9e-06     0.008     134     171 ..      31      65 ..       8     111 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.9e-06
    TIGR01128 134 arlkelglkidneavqlLaelvegnllaiaqeLekLal 171
                  + +++ gl ++++a +lL+e+v+++++++ + L+   +
  MMETSP1174-20130828|19689_1  31 EVARKEGLGLEQQAAELLVESVGNDIRQVLNCLQ---M 65 
                  6789*********************876655544...4 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     2e-05      0.04     167     250 ..      11      97 ..       3     114 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2e-05
    TIGR02397 167 RcqrfdfkkikeekiverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskg...kitlekveellglvseekllel 250
                   c + ++++ ++++i++r  ++++ke++ +e++a el+ ++  + +R  l+ l+     +k    + t+ +v++ l  v+++++l+l
  MMETSP1174-20130828|19689_1  11 HCFDLRLRRPHKTQIAKRAIEVARKEGLGLEQQAAELLVESVGNDIRQVLNCLQMWNGGEKPngqTATYMDVKKRLWQVNKDSILRL 97 
                  5888999999**************************************999997665544433336777788888877777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 481.37
//
Query:       MMETSP1174-20130828|19694_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1174-20130828|19696_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 291.90
//
Query:       MMETSP1174-20130828|19699_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.1   1.0      0.033   11.0   0.7    1.1  1  TIGR03669 urea_ABC_arch: urea ABC transporter, substrate-binding protein
       0.97    5.7  15.1        1.2    5.4  10.5    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03669  urea_ABC_arch: urea ABC transporter, substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   1.6e-05     0.033     259     351 ..      64     154 ..      37     158 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
    TIGR03669 259 verfyekfPdaeyineeaennylsvylykkavekagttdqddvidvlesGveldaPegkvaldgathhishkmrvaradedhnievvkeaeii 351
                    ++ ++  ++e   +eae ++ ++   k   e+ +    d+v+  +e+ +e ++   + ++++  +h++h++r  +++++ + ++++++++ 
  MMETSP1174-20130828|19699_1  64 ALKYEKRLREKEMKTQEAEYKH-TISCAKAQLEENKKYTADHVQARMEQRIE-ESKRMRNKFEALENHMKHQLRTKKMEKKKSAKIKSKRRKQ 154
                  4567777777777777777654.6778899999****************998.7888999**********************99999888765 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.5   0.00057       1.2      22     118 ..      56     152 ..      32     157 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00057
    TIGR03319  22 iaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekek 118
                   +++   +a +  k++ e+  k  ea+ k+++  ak ++++ ++ +  ++++r ++  ++ kr+++k e+l++++++  ++++  +kk +++++k++
  MMETSP1174-20130828|19699_1  56 LKRNADAKALKYEKRLREKEMKTQEAEYKHTISCAKAQLEENKKYTADHVQARMEQRIEESKRMRNKFEALENHMKHQLRTKKMEKKKSAKIKSKRR 152
                  3333333333444445555555556666666677777777777777777777777777777777777777777775444444444455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       685  (0.166992); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 463.43
//
Query:       MMETSP1174-20130828|19701_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1174-20130828|19702_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 259.26
//
Query:       MMETSP1174-20130828|19704_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 773.08
//
Query:       MMETSP1174-20130828|19705_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   30.3   0.6    6.7e-07   26.5   0.4    1.9  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    1.5e-06   25.2   0.0    1.7e-06   25.0   0.0    1.1  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
    4.6e-06   23.8   0.0    5.1e-06   23.7   0.0    1.1  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family
    4.1e-05   20.6   0.2    6.1e-05   20.1   0.1    1.4  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
     0.0017   14.4   0.0     0.0018   14.2   0.0    1.1  1  TIGR02470 sucr_synth: sucrose synthase
     0.0066   13.2   0.3      0.011   12.5   0.1    1.4  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.4   9.8e-10   6.7e-07     268     363 ..      17     131 ..       9     142 .. 0.63

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 9.8e-10
    TIGR03088 268 ellqalDvfvLpslaeGisntvLeamasgl.PviatavGGnaeLveegvtGklv..p.........ss.....daealakalekYvsd..kklikahGkaarerieqkfsleamv 363
                  +  +++D+fvLp  +eG  +   eama g+  vi t+  G a+++ +g  G  v  p          s       + l + +++ +++  ++ ++++G aar+ri ++fs ++++
  MMETSP1174-20130828|19705_1  17 AEYATADCFVLPTRGEGFNLPTAEAMAMGVsAVIVTNFSGPADFIGDGPDGVSValPlqvdgtithASglvepSRDHLQSLMKQAHAQrgTEEARRRGVAARSRILERFSPATVA 131
                  556799***********************94599***********9998776442121111110001100000122233333333333113456778888999999999876655 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.6e-09   1.7e-06     266     352 ..      15     104 ..       2     123 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.6e-09
    TIGR03999 266 veellslsDllllpsekesFGLaaLeamacgvp.viasnvgGlpevveegetGflvev.gdveemaekalklledee.klqelkkaalek 352
                  ++  ++ +D ++lp   e F L   eama+gv  vi++n +G  +++ +g +G  v +  +v+   ++a  l+e ++ +lq+l k+a ++
  MMETSP1174-20130828|19705_1  15 LRAEYATADCFVLPTRGEGFNLPTAEAMAMGVSaVIVTNFSGPADFIGDGPDGVSVALpLQVDGTITHASGLVEPSRdHLQSLMKQAHAQ 104
                  5666899*************************64899****************9776526899999999999986541456666666554 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   7.4e-09   5.1e-06     269     381 ..       7     132 ..       1     142 [. 0.78

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 7.4e-09
    TIGR02149 269 eemlekeelvellsaaevfvcPsvyePlGivnleamacet.pvvasavGGipevvvdgetGvlveidd......ddadkfeadlakaidkllad......pelakklGeaGrkraeeefsweaiae 381
                  +++l++ el++ +++a+ fv P+  e + +   eama ++ +v+ ++  G  + + dg  Gv v          ++a++ ++   + +++l+++       e a++ G a r r+ e fs +++a 
  MMETSP1174-20130828|19705_1   7 RDVLSRAELRAEYATADCFVLPTRGEGFNLPTAEAMAMGVsAVIVTNFSGPADFIGDGPDGVSVALPLqvdgtiTHASGLVEPSRDHLQSLMKQahaqrgTEEARRRGVAARSRILERFSPATVAA 132
                  57899********************************99736888999*************9997654455666444455554555666666542121224789*******************996 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   8.9e-08   6.1e-05     264     315 ..       9      61 ..       6     120 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.9e-08
    TIGR04047 264 avddaelpaLvrlAdalafpslkEGfGLvvlEalAsGvP.vvaselaPfteyl 315
                  ++  ael a +++Ad +++p   EGf L   Ea+A Gv  v++ + +   +++
  MMETSP1174-20130828|19705_1   9 VLSRAELRAEYATADCFVLPTRGEGFNLPTAEAMAMGVSaVIVTNFSGPADFI 61 
                  57889********************************9625566665555555 PP

>> TIGR02470  sucr_synth: sucrose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.7e-06    0.0018     645     702 ..      23      82 ..       6     110 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.7e-06
    TIGR02470 645 GifvqpalyeafGltvveamtsglPt.fatkfGGpleiiedgvsGfhid.Pteleeaaek 702
                    fv p++ e f l   eam+ g+ + + t+f Gp++ i dg +G+ +  P + + + ++
  MMETSP1174-20130828|19705_1  23 DCFVLPTRGEGFNLPTAEAMAMGVSAvIVTNFSGPADFIGDGPDGVSVAlPLQVDGTITH 82 
                  579********************986368****************998657777766555 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   1.6e-05     0.011     292     351 ..      10      70 ..       3     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.6e-05
    TIGR03449 292 rpkeelvevyraadvvavPsysesfGlvaleaqasGt.PvvaarvGGlpvavadGetGllv 351
                   +++el + y +ad  ++P+  e f l + ea a G   v+ ++  G +  + dG  G+ v
  MMETSP1174-20130828|19705_1  10 LSRAELRAEYATADCFVLPTRGEGFNLPTAEAMAMGVsAVIVTNFSGPADFIGDGPDGVSV 70 
                  5789999*****************************7268899999999899999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 630.14
//
Query:       MMETSP1174-20130828|19703_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-14   52.1   0.0    3.2e-14   51.4   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
      0.001   17.1   0.0     0.0019   16.3   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   1.6e-17   3.2e-14       2     133 ..      95     237 ..      94     247 .. 0.71

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 1.6e-17
    TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn......vkllnaAvgdregeleftvsdd.atgnsslaads...elaees....eieVevvtlddlveeag.lekvdllKiDvEGaEleVLrglaetlee 133
                  ++D+G+n+G  +  ++ +++e+rvia+EP+p++l  l + +   +         v +l+ Avg+++ + +  + +  ++++++l a++   +   +      +   + +ld+lv++ +  e  +l K+Dv+G E++ L+g++e l  
  MMETSP1174-20130828|19703_1  95 FFDVGSNVGACTFEMLVRIPEARVIAVEPSPQNLFYLSRSLVRLATAMpsvlarVLVLPTAVGNSSSQGQSISLKTpKGQGDNLGASEvspR---TVssdpRTMSTLWSLDRLVDSSTlREGGSLMKMDVQGSECHALEGMSELL-A 237
                  79******************************99877766543322111244579999*****99995444433321344445555554332...2233443345789**********888899****************77754.4 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.3e-07    0.0019      23      68 ..      95     140 ..      89     157 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.3e-07
    TIGR02469  23 llDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgv 68 
                  + D+G+  G  t e+  ++p+ rv+a+e +++ l  +++ l r++ 
  MMETSP1174-20130828|19703_1  95 FFDVGSNVGACTFEMLVRIPEARVIAVEPSPQNLFYLSRSLVRLAT 140
                  78******************************99999988887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1624.83
//
Query:       MMETSP1174-20130828|19709_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 2175.69
//
Query:       MMETSP1174-20130828|19712_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 502.29
//
Query:       MMETSP1174-20130828|19715_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.47
# Mc/sec: 179.73
//
Query:       MMETSP1174-20130828|19717_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 609.18
//
Query:       MMETSP1174-20130828|19718_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042    9.3   6.9      0.047    9.1   4.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.066   10.3   1.8       0.12    9.5   1.1    1.5  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
      0.088    8.3   6.8       0.09    8.2   4.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.13   10.4   4.5       0.15   10.2   3.1    1.1  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.8   4.6e-05     0.047     682     757 ..       4      80 ..       2      88 .] 0.66

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.6e-05
    TIGR02169 682 erleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeek.lkerleeleeklseleeeleek 757
                  ++le+Le+e+e+lq+el+ ie+     + kl   e+++ ++   +eq+++ +++  +  l++l++++ +l ee   +
  MMETSP1174-20130828|19718_1   4 RELEGLEKERERLQKELDDIEHTDTVNKYKLTGLERNHADLLTSREQVRAANQElIQPVLKKLQDEITSLTEEYGRQ 80 
                  56777888888888888888877777777788887777777777777765544414556777777777777765444 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00012      0.12      94     136 ..       5      50 ..       2      81 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00012
    TIGR01486  94 eLeeleeelglklkglgdltaeei...aeltGLsreaaalaqerey 136
                  eLe le+e ++  k l+d++ ++     +ltGL+r++a+l   re 
  MMETSP1174-20130828|19718_1   5 ELEGLEKERERLQKELDDIEHTDTvnkYKLTGLERNHADLLTSREQ 50 
                  67777777777777778776654311168**********9988874 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.7   8.8e-05      0.09     702     775 ..       6      80 ..       1      88 [] 0.21

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 8.8e-05
    TIGR02168 702 lkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaq.lekeleeleeereeleeeleea 775
                  l+ leke+e+l++el++++++ +  + kl+ l+ + + l ++ eq+++  ++ ++  l++l++e+++l+ee   +
  MMETSP1174-20130828|19718_1   6 LEGLEKERERLQKELDDIEHTDTVNKYKLTGLERNHADLLTSREQVRAANQElIQPVLKKLQDEITSLTEEYGRQ 80 
                  222222222222222222222222222222222222222222222111111101112222222222222222222 PP

>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.1   0.00015      0.15      26      87 ..      15      76 ..       6      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00015
    TIGR03142 26 rakatadrdelnlavYrdrLaELerdeaeglldeaeaeaakaElerrLLadakeaeeeaasq 87
                 r +++ d+ e+   v + +L+ Ler +a+ l +++++ aa +El +  L++ +++ ++ +++
  MMETSP1174-20130828|19718_1 15 RLQKELDDIEHTDTVNKYKLTGLERNHADLLTSREQVRAANQELIQPVLKKLQDEITSLTEE 76
                 22355555699999**************9999******************999987776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 313.92
//
Query:       MMETSP1174-20130828|19723_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-06   24.3   0.0      4e-06   24.2   0.0    1.0  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    4.9e-06   24.1   0.0    5.5e-06   24.0   0.0    1.0  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0004   17.7   0.0    0.00048   17.4   0.0    1.0  1  TIGR03611 RutD: pyrimidine utilization protein D
     0.0017   15.4   0.0      0.002   15.2   0.0    1.1  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
      0.004   14.4   0.0     0.0045   14.3   0.0    1.1  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.032   11.7   0.0      0.038   11.4   0.0    1.0  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   5.8e-09     4e-06     187     250 ..      28      91 ..       7      92 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.8e-09
    TIGR02427 187 erleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                  ++++++a P lv+ G +D+ +  e++    + +p++r++ ++e+ H   l  p++f++l  +f+
  MMETSP1174-20130828|19723_1  28 NEARRVACPSLVVHGVKDPMCLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLALTFF 91 
                  6799*******************************************************99998 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.1e-09   5.5e-06     226     286 ..      29      90 ..      25      92 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.1e-09
    TIGR01250 226 klkeIkvPtLltvgefdem.tpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                    + +++P+L++ g  d m  +e+a   +e+i++srl++f++g h   +  p+++++l   f
  MMETSP1174-20130828|19723_1  29 EARRVACPSLVVHGVKDPMcLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLALTF 90 
                  56789*********9997615799***********************999999999876665 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     7e-07   0.00048     194     256 ..      30      92 ..      24      94 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 7e-07
    TIGR03611 194 ldriklpvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldfLa 256
                  + r+ +p l++    D +  + ++  + e++P+++l+l + G h   +  p++fn l l f+a
  MMETSP1174-20130828|19723_1  30 ARRVACPSLVVHGVKDPMCLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLALTFFA 92 
                  568889999998888888889999999******************************999986 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.9e-06     0.002     220     281 ..      31      92 ..      22      93 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.9e-06
    TIGR03343 220 geikaktlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidflr 281
                   ++   +lv  g  d +  ++h   +  n+p+++l +f+   h       d+fn l++ f++
  MMETSP1174-20130828|19723_1  31 RRVACPSLVVHGVKDPMCLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLALTFFA 92 
                  56777899**************************************************9986 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.5e-06    0.0045     189     248 ..      28      88 ..      21      92 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.5e-06
    TIGR03695 189 eklkelklpvlylvGekDek.FkkiakemqkllpalklevieeaGHnihlenpeafakile 248
                  ++ +++++p l ++G kD     + a  +++++p+++le+++e  Hn+hl  p++f++   
  MMETSP1174-20130828|19723_1  28 NEARRVACPSLVVHGVKDPMcLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLAL 88 
                  5667788999999999997525788888999*************************97655 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-05     0.038     185     242 ..      31      88 ..      24      91 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.6e-05
    TIGR01738 185 qkisvPvLrlyGqkDalvPakvvealdklapqsellvlekaahaPflshaeafaallr 242
                   ++  P+L ++G kD +   + +   ++ +p+s+l ++ ++ h   l  +++f  l  
  MMETSP1174-20130828|19723_1  31 RRVACPSLVVHGVKDPMCLIEHAYWFNENIPNSRLELFPEGKHNLHLRFPDQFNDLAL 88 
                  67999******************************************99999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 404.48
//
Query:       MMETSP1174-20130828|19725_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|19726_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|19728_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|19724_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 723.81
//
Query:       MMETSP1174-20130828|19729_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 409.17
//
Query:       MMETSP1174-20130828|19727_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.0   0.4     0.0059   13.5   0.1    1.8  2  TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01109  Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2     0.016        67      35     279 ..      42      82 ..      19     108 .. 0.57
   2 !   13.5   0.1   1.4e-06    0.0059     234     326 ..      87     184 ..      78     193 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.016
    TIGR01109  35 lsnipeaglaltaeegvlalfykvaigs...giaplliflGvGaltdfgpllanpktlllGaaaqlGifatllgalalnflgiisfslkqaaaigiiGGadGptaiylsaklapellaaiavaaysylalvpliqppimkaltsekerkirmkqlrtvskrekilfpivllllvalllpdaapllGmlafGnllresGvverlsetvsnellnivtillglsvgaklvadkfltpqtllilllgvvaf 279
                  l  ip  ++++++  +v++ + k  ++    g++p+++                                                                                                                                                                                                               +a+
  MMETSP1174-20130828|19727_1  42 LLSIPCFAIGVLSISSVYNNYAKSQLKFhalGLIPVIV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAL 82 
                  44566666666666666666666555431113334332...............................................................................................................................................................................................................222 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.4e-06
    TIGR01109 234 lsetvsnellnivtillglsvgaklvadkfltpqtllilllgvv.....afavatasgvllakllnlflkekinpligsagvsavpmaarvsnklale 326
                  +s+ ++n+ +  + ++lg+    ++  d   +  t+++    v+     a    ++ g l+ +   l++ +    ligsa v  +pmaa v+n+ a e
  MMETSP1174-20130828|19727_1  87 MSNVIQNTSIVAICVFLGVFNSKDMEHDVKWNMPTIVMACNVVIlflfcATPFLMTPGELFPQYDGLVSTDTFRFLIGSAFVYVLPMAAAVANNRASE 184
                  56666666666666666666666666666555555443333333000003344577899999999***************************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 625.63
//
Query:       MMETSP1174-20130828|19731_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|19733_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 650.52
//
Query:       MMETSP1174-20130828|19736_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 205.75
//
Query:       MMETSP1174-20130828|19737_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1244.47
//
Query:       MMETSP1174-20130828|19740_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 896.62
//
Query:       MMETSP1174-20130828|19742_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 934.48
//
Query:       MMETSP1174-20130828|19743_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   82.4   0.0    3.5e-08   31.0   0.0    3.7  4  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0011   15.1   3.2     0.0031   13.6   2.2    1.6  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.77   1.6e+03      15      25 ..      67      77 ..      66      77 .. 0.85
   2 !   22.1   0.0   1.2e-08   2.5e-05       1      33 [.      87     119 ..      87     121 .. 0.95
   3 !   31.0   0.0   1.7e-11   3.5e-08       1      35 []     122     156 ..     122     156 .. 0.96
   4 !   25.2   0.0   1.2e-09   2.5e-06       1      31 [.     157     187 .]     157     187 .] 0.96

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.77
    TIGR00756 15 rveeAlelfde 25
                 +++ Al+l+de
  MMETSP1174-20130828|19743_1 67 DWRSALRLLDE 77
                 68899999987 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1.2e-08
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivP 33 
                  +ty ++i  +++a+++e Al+l+++ + r++vP
  MMETSP1174-20130828|19743_1  87 HTYAAVIGVCGRAKQWELALQLLRRVEQRNMVP 119
                  69****************************999 PP

  == domain 3    score: 31.0 bits;  conditional E-value: 1.7e-11
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++++ is++++ag++e+A++l++ M+ +g+ P++
  MMETSP1174-20130828|19743_1 122 ISFSAAISACGNAGQWEKAIQLLNVMRQSGVQPNV 156
                  5899*****************************96 PP

  == domain 4    score: 25.2 bits;  conditional E-value: 1.2e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergi 31 
                  +++n+ is++ ka+++++A+el++eM+ +g+
  MMETSP1174-20130828|19743_1 157 ISFNAAISACEKAKQWKKAIELLQEMRQSGV 187
                  58**************************996 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.2   1.5e-06    0.0031      19     147 ..      53     183 ..      43     186 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-06
    TIGR03939  19 adekydqliiqARaGdlaealslLqklyrktkldkkvldDllavlsWagedkevidvyeryslvglpare..lealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltla..dagkdeeAlkalkelk 147
                   d+k +q+i++ Ra d  +al+lL++   ++ ++   ++  + v ++a + + ++++ +r++ +++  ++    a+++A+ n++qw+kA++l + + q    +p++++  a ++a   a++ ++A + l+e++
  MMETSP1174-20130828|19743_1  53 QDRKNNQAIKNLRA-DWRSALRLLDEHETEGTASVHTYAAVIGVCGRAKQWELALQLLRRVEQRNMVPEVisFSAAISACGNAGQWEKAIQLLNVMRQSG-VQPNVISFNAAISAceKAKQWKKAIELLQEMR 183
                  68888999999998.9************99999****************************7777766651157899***************98776654.55665554444433224556667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 881.50
//
Query:       MMETSP1174-20130828|19745_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-78  260.8   0.0    1.5e-77  258.6   0.0    1.9  1  TIGR03723 bact_gcp: putative glycoprotease GCP
    5.2e-67  224.1   0.0    3.8e-66  221.2   0.0    2.2  1  TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
    7.2e-38  128.3   0.5    9.6e-37  124.6   0.2    2.4  2  TIGR03722 arch_KAE1: universal archaeal protein Kae1
    4.3e-13   47.6   0.2    6.7e-13   46.9   0.1    1.3  1  TIGR03725 bact_YeaZ: universal bacterial protein YeaZ


Domain annotation for each model (and alignments):
>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.0   1.5e-80   1.5e-77       1     256 [.      22     314 ..      22     322 .. 0.92

  Alignments for each domain:
  == domain 1    score: 258.6 bits;  conditional E-value: 1.5e-80
    TIGR03723   1 iLgiesscDetavavvedgkevlsnvvasqielhakygGvvPElAsRahleklaplveealeeagvkledidaiAvtagPGLvgaLlvGvsvakalalalkkpliavnHlegHllaalle................ekelefpflaLlvSGghtqlllvkevgeyellgetlDDaaGEafDKvakllglgyP...gGpaidklakegdekafklprpllekkeldfSFsGLKtavlnlveklkeeeeele..................kadiaasfqeavvdvlveklkralk 256
                  +Lgie+scD+t++av++++  +l +++asq ++h+++gGvvP lA +ah +k+++++++al++ag++++++da+A+t+gPGL  +L vG+s +++la  ++kp++av+Hle+H l a+ +                   l+fpfl+LlvSGgh+q+ll ++vg+y +lg tlDDa+GEa+DKva++lgl+     gGpa+++la +gd+ ++ lp p+ +++++d+S++GLK+a++ +v+k++e+ee ++                  +a++aasfq++++++l+++++ral+
  MMETSP1174-20130828|19745_1  22 VLGIETSCDDTGAAVMRSDGVILGEALASQYHIHEQFGGVVPGLAQKAHEDKIDSVISRALAQAGMTIDEVDAVAATQGPGLEICLRVGCSKGRTLARDHGKPFVAVHHLEAHCLLARPNlrsekgpevgvaagsdVIGLNFPFLTLLVSGGHCQILLCRGVGSYIILGGTLDDAMGEAYDKVARMLGLDGCagrGGPAVEELALSGDPLSIPLPVPMQRRPDCDMSYAGLKNAFRLAVHKEREREELIDdelasnsegagaalsptsQANLAASFQHVAIRHLCDRVNRALD 314
                  7****************9989********************************************************************************************9887766669999999999987666799***********************************************986433389*******************************************99988544444455666777888888889********************9986 PP

>> TIGR00329  gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   0.0   3.7e-69   3.8e-66       1     255 [.      23     314 ..      23     323 .. 0.93

  Alignments for each domain:
  == domain 1    score: 221.2 bits;  conditional E-value: 3.7e-69
    TIGR00329   1 LgiEtscddtgvavvdeekkvlanlkisqaklhakegGvvPelAsrhHaekipkllekalkesnvelseidliavtagPGlagaLlvgatvArsLalaldkPligvnHllgHilapl..letk..............klqlpfvsLlvSGGhtqiiavksiedyevlgetlDdavGealDkvarelglk...ypggpaieelakkgkekkfefplpltkkakldfsfSglktaalrkleklk..................seleeaelediaysfqeavidhliektkralk 255
                  LgiEtscddtg av+++++ +l +   sq ++h++ gGvvP lA++ H+ ki +++++al +++++++e+d++a t+gPGl  +L+vg   +r+La  + kP+++v+Hl++H l ++  l ++               l++pf++LlvSGGh qi++ ++++ y +lg tlDda+Gea+Dkvar+lgl+     ggpa+eela  g++ +  +p+p++ ++  d+s+ glk+a + +++k +                  + l++++ +++a+sfq+ +i+hl ++++ral+
  MMETSP1174-20130828|19745_1  23 LGIETSCDDTGAAVMRSDGVILGEALASQYHIHEQFGGVVPGLAQKAHEDKIDSVISRALAQAGMTIDEVDAVAATQGPGLEICLRVGCSKGRTLARDHGKPFVAVHHLEAHCLLARpnLRSEkgpevgvaagsdviGLNFPFLTLLVSGGHCQILLCRGVGSYIILGGTLDDAMGEAYDKVARMLGLDgcaGRGGPAVEELALSGDPLSIPLPVPMQRRPDCDMSYAGLKNAFRLAVHKERereeliddelasnsegagAALSPTSQANLAASFQHVAIRHLCDRVNRALD 314
                  8***************************************************************************************************************8875422555556777777666666689*************************************************888899*****************************************999988899999****99988888778999************************97 PP

>> TIGR03722  arch_KAE1: universal archaeal protein Kae1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.2   9.3e-40   9.6e-37       1     218 [.      22     268 ..      22     276 .. 0.86
   2 ?   -1.3   0.0      0.19   1.9e+02     215     246 ..     289     320 ..     279     322 .. 0.85

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 9.3e-40
    TIGR03722   1 vlGiestahtlgvgivdeekeilan.vkktyvpek..gGihPreaaehhaeaikkvlkealeeakvsledidavafsqGPGlgPaLrvvataaraLalklekplvgvnhavahveigrlatg.................akdP.vvlyvsGgntqvlale.kgryrvfGetlDiavGnllDkfaRevglahP...Ggpkieklaekgkel.ielPyvvk...GmdlsfsGlltaalralkkgakled 218
                  vlGie+    +g++++ +++ il +  +++y+ ++  gG+ P  a + h ++i++v+++al +a+++++++dava +qGPGl  +Lrv+ +  r+La   +kp+v+v+h  ah  ++r + +                 ++ P ++l vsGg+ q+l  +  g y ++G tlD a+G + Dk+aR +gl+     Ggp++e+la +g+ l i lP  ++     d+s++Gl  a   a++k+++ e+
  MMETSP1174-20130828|19745_1  22 VLGIETSCDDTGAAVMRSDGVILGEaLASQYHIHEqfGGVVPGLAQKAHEDKIDSVISRALAQAGMTIDEVDAVAATQGPGLEICLRVGCSKGRTLARDHGKPFVAVHHLEAHCLLARPNLRsekgpevgvaagsdvigLNFPfLTLLVSGGHCQILLCRgVGSYIILGGTLDDAMGEAYDKVARMLGLDGCagrGGPAVEELALSGDPLsIPLPVPMQrrpDCDMSYAGLKNAFRLAVHKEREREE 268
                  89********************9883356666544127****************************************************************************999976655577888888777777766664789********99876269**************************988888************65325566665533357*******9999888888776665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.19
    TIGR03722 215 kledvcyslqetafamlvevteRalaltekke 246
                  + +++++s+q +a   l++  +Ral   ++ e
  MMETSP1174-20130828|19745_1 289 SQANLAASFQHVAIRHLCDRVNRALDWCKRME 320
                  5678999*****************99888765 PP

>> TIGR03725  bact_YeaZ: universal bacterial protein YeaZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   6.6e-16   6.7e-13       1      97 [.      22     134 ..      22     158 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 6.6e-16
    TIGR03725   1 iLaiDTsteacsvalle.dgevvaes...............iedsgrrhselllpaieellaeaglslqdldaiavglGPGsFTGlRiGlatakgLalalgipvvgvssldal 97 
                  +L i+Ts +  ++a+++ dg +++e+                  +++ h  ++   i+++la+ag++++++da+a ++GPG    lR+G++  ++La   g+p+v+v  l+a 
  MMETSP1174-20130828|19745_1  22 VLGIETSCDDTGAAVMRsDGVILGEAlasqyhiheqfggvvPGLAQKAHEDKIDSVISRALAQAGMTIDEVDAVAATQGPGLEICLRVGCSKGRTLARDHGKPFVAVHHLEAH 134
                  689*************9899999999999999999999999999******************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1160.11
//
Query:       MMETSP1174-20130828|19746_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|19748_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|19752_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1035.61
//
Query:       MMETSP1174-20130828|19753_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1174-20130828|19751_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 841.43
//
Query:       MMETSP1174-20130828|19749_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 943.92
//
Query:       MMETSP1174-20130828|19757_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|19758_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 285.38
//
Query:       MMETSP1174-20130828|19759_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00066   16.7   0.8    0.00068   16.6   0.6    1.1  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family


Domain annotation for each model (and alignments):
>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   1.7e-07   0.00068      71     124 ..       4      57 ..       1      67 [. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.7e-07
    TIGR00891  71 aDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaal 124
                  a+ +g+ l  ++ ++l++v ++ c fapt +  ++ rl + +g++G   l aa 
  MMETSP1174-20130828|19759_1   4 ANLYGQDLGSIMGLTLYAVFSVSCFFAPTVTNKIGTRLTMTLGITGYGALVAAS 57 
                  6678999999***********************************954455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 275.29
//
Query:       MMETSP1174-20130828|19754_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-06   21.7  25.8    1.1e-05   21.2  17.9    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0041   12.7  40.4     0.0011   14.5  15.4    1.6  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2  17.9   5.4e-09   1.1e-05     680     961 ..      36     311 ..       9     331 .. 0.43

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.4e-09
    TIGR02169 680 lrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse..ekieeieeelekleeevsriearl.eeieaelnklelekelleeeiqelqeeieeleeqkkei.ekeieelkakleeleee...leeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkel 961
                  l e l++L +e + l+++ +   +  ++l +k+s+ ++k ++++++  +l e+++++   l e            ++ ++++ +le+e+    e+     e++ +l +el++  + ++ +e+++ekle e++ + a+  ee+e++++  e+ +   e+   e  e+ +++e+  +e  + + ee  a ++ le+e   ++e  + v+e  + + +L++++++ +++l   e+++e+++ +++ + +r+++ +a+++   ++l++  +  +e e++++  + l+k+ +++
  MMETSP1174-20130828|19754_1  36 LVESLQALVSEHSMLKDQAQAGGQGREDLANKVSELQEKNHRLMNDKMELMEKQAANLTLLGET-----------AAREKKVRDLEEEVRVALEAGVSNSEEVGELRQELAKlsSTLRDVEDSKEKLEGEMAALVASHgEEVEKHVKTVETMQGDKEKTDLEWTERLAAVEAGSAEAaASKTEEGLALVRTLEAElvsVKEELVSVQESTAGQTNLEQQVQDTQQKLTLSEQANEQVNGQLKAALERVEQAEAEAADTMKKLETRTD--EEVEPQAPPPPPLKKILETV 311
                  3344444444444444444444444444444444444444444444444444443333333222...........222333333333333333333333333333333322111333333444444443333333222133333333333333333333333333333333322222022223333333333333000344444555555666777777777777777777777777777777666666666555544444444333..34444444455555555554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  15.4   5.5e-07    0.0011     307     496 ..      36     230 ..      15     232 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.5e-07
    TIGR02168 307 lkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeeles.leaeleeae..aeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieele.kkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleea.eqalqkaeeelaqlqarlesl 496
                  l e+l++l +e ++l++q +   + +e+l+++++el+e+  +l+++  + +e++++++    e ++ e+++++leee++ + ++  + +e++ +l++el +l+++l ++e+++e+l+ e  +l  ++ ee+e+++k++++   ++e++  e +e+l+++e+  +e+ ++ +e     ++++e+el +++++l s+
  MMETSP1174-20130828|19754_1  36 LVESLQALVSEHSMLKDQAQAGGQGREDLANKVSELQEKNHRLMNDKMElMEKQAANLTllGETAAREKKVRDLEEEVRVALEAGVSNSEEVGELRQELAKLSSTLRDVEDSKEKLEGEMAALVaSHGEEVEKHVKTVETMQGDKEKTDLEWTERLAAVEAGSAEAAASKTEEgLALVRTLEAELVSVKEELVSV 230
                  567888899999999999999999999999999999999988865544404444444332256778888999999999999999999999999999999999999999999999999988887514557788888888888888888888888888888887666555444430444556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       443  (0.107996); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1084.20
//
Query:       MMETSP1174-20130828|19760_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 203.06
//
Query:       MMETSP1174-20130828|19761_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|19767_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 195.63
//
Query:       MMETSP1174-20130828|19764_1  [L=2281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.21u 0.17s 00:00:01.38 Elapsed: 00:00:01.00
# Mc/sec: 3010.67
//
Query:       MMETSP1174-20130828|19772_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 687.12
//
Query:       MMETSP1174-20130828|19776_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|19778_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1174-20130828|19779_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|19771_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-107  356.6  25.0    7.6e-62  207.1   4.2    3.0  3  TIGR00845 caca: sodium/calcium exchanger 1
    2.4e-13   47.7   0.8    4.1e-13   46.9   0.6    1.4  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    0.00024   16.7   4.1    0.00037   16.1   2.8    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   1.3   2.6e-37   3.6e-34     385     614 ..      60     285 ..      41     313 .. 0.85
   2 !  207.1   4.2   5.5e-65   7.6e-62     658     846 ..     303     484 ..     289     494 .. 0.83
   3 !   45.1   2.1   4.9e-16   6.7e-13     847     910 ..     508     570 ..     499     573 .] 0.91

  Alignments for each domain:
  == domain 1    score: 115.5 bits;  conditional E-value: 2.6e-37
    TIGR00845 385 aadkeeedevskiffepgtytvlenvGsveltvvrrGgdlsktvlvdyktedGtanaGsdyvfteGtlvfkPgetqkelrieiidddifeedehfyvrlsnlrvs.sedglleaekasavaqlasPllatvtildddhaGiftfeekvlevsesiGelevkvlrtsGarGtvivPyktvegtaregkdfedaegelvfendeteklievkivdeeeyekeesffielgePk 614
                   + ke+e+e + i +    + +     +v++t++++G   ++   v y+t+dGta+aG d+  + G lvf Pg +   l+++++ +    +  +f v l++   +  e g    +++ +   la  +++ + + dddhaG+f+f     ev es  + +v v rt G  G v v + t ++ta+++ d+  +++ l f++ e++k++ + ivd+e+yekee+f+  l++P+
  MMETSP1174-20130828|19771_1  60 CTTKEKEEECVVISLSSVLFAMHLGAPKVTVTIACKG--HTTEQAVAYTTQDGTAKAGIDFTAASGKLVFAPGTE--SLEVDLVGNSS-GNPGNFEVILTDTTDDpGETGGGGCSSKDKDGILAGATVSILPVSDDDHAGVFSFGAASYEVCESEKTTSVAVERTGGLHGDVTVHFTTRDETATGSIDYGVVDEILTFKHGEMVKMVVLDIVDDESYEKEETFQCVLSDPT 285
                  44556666777888888888888888999999****9..7788899**************************986..57788998765.67789*9*9999987754555555555666677788788888888***********************************************************************************************96 PP

  == domain 2    score: 207.1 bits;  conditional E-value: 5.5e-65
    TIGR00845 658 tkleviieeskefkstvdklikkanl...alvvGtsswreqfiealtvsagddddddedgeeklPscfdyvmhfltvfwkvlfafvPPtdylgGwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsiaaiyhaa.qGe 846
                  t +  +i   +  k   d ++   n+   ++ +G + w+ qf+ a+tv+ g d           Ps  ++  h+++++wk+ fa++PPtd+ gGw+cf v++++iG +taliGd+a+ +Gc++g+k s ta++fvalGts+Pdtfas+ +a+ d+yad+s+GnvtGsn+vnvflG+G+ w iaaiy+ +  G 
  MMETSP1174-20130828|19771_1 303 TVV--HIMSDETQKKFTDSILLLMNVnrdRVKIGHNNWKSQFVAAITVNGGADGV-------VQPS--EWALHLIALPWKLFFAMIPPTDFAGGWVCFGVALIFIGFVTALIGDMAALLGCVVGMKASTTAITFVALGTSLPDTFASMASAKMDRYADNSLGNVTGSNSVNVFLGLGLPWLIAAIYWDNaSGA 484
                  333..343333344455554433333112788*****************995433.......3465..7899*******************************************************************************************************************751455 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 4.9e-16
    TIGR00845 847 kfkvepGtlafsvtlftvfaliaivvlllrrrkeiGgelGGPrtaklltsallvllwllyvlla 910
                   f v +G+l+ svt f+v a +++  l lrr   +GgelGGP t+k++ts+++v++wl y++++
  MMETSP1174-20130828|19771_1 508 VFVVPAGSLGVSVTTFVVTATVCLLTLGLRR-FVVGGELGGPATSKYATSVFFVFMWLAYIVVS 570
                  699*********************9998877.68***************************987 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.6     3e-16   4.1e-13     177     265 ..     387     476 ..     305     485 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3e-16
    TIGR00367 177 vllivgltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaar.kglgdlavgsvvGsNifdIlvglglpallati 265
                  v + v+l+++   + l+ d a  ++ ++g+ + +  +t +A+GTSlp+   s+++a+  +  d ++g+v GsN  ++ +glglp+l+a i
  MMETSP1174-20130828|19771_1 387 VCFGVALIFIGFVTALIGDMAALLGCVVGMKASTTAITFVALGTSLPDTFASMASAKmDRYADNSLGNVTGSNSVNVFLGLGLPWLIAAI 476
                  567788999999*****************************************998625789*************************875 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.8   2.7e-07   0.00037    1053    1135 ..     391     474 ..     386     479 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-07
    TIGR00927 1053 GsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivark.GlGdmavsssvGsnifditvGlplpwllf 1135
                    ++++i   + l+   a  +G  +G+      +t +a Gts+pd  +s+  a+     d ++    Gsn  ++ +Gl lpwl+ 
  MMETSP1174-20130828|19771_1  391 VALIFIGFVTALIGDMAALLGCVVGMKASTTAITFVALGTSLPDTFASMASAKMdRYADNSLGNVTGSNSVNVFLGLGLPWLIA 474 
                   56788888899999999999******************************99862589***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.66
# Mc/sec: 1145.91
//
Query:       MMETSP1174-20130828|19783_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|19780_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1191.47
//
Query:       MMETSP1174-20130828|19786_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|19789_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 408.34
//
Query:       MMETSP1174-20130828|19791_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1174-20130828|19794_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1174-20130828|19792_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    9.5   4.2        0.6    8.4   2.9    1.6  1  TIGR02523 type_IV_pilV: type IV pilus modification protein PilV


Domain annotation for each model (and alignments):
>> TIGR02523  type_IV_pilV: type IV pilus modification protein PilV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.9   0.00015       0.6      29     108 ..     146     225 ..     137     252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00015
    TIGR02523  29 kavratksasertiasqlaynlldrmranpkalsdkkyktatalastklsakasdcatsaateanaaaeadlkewlselk 108
                  +a   + +++e++   +++y l + m +  +  +++  + +    + k  ++ + c +s+++++n+ + +d ++  ++ +
  MMETSP1174-20130828|19792_1 146 RAFDLVGESAEEEESVMITYALEELMIMPDTDSGEDTSHPSADNEAAKTMSNTGSCDDSNNNNNNDDDDDDNEHSEEQTR 225
                  67888999999******************99999998888888888899999******9999999999887666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|19795_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 887.51
//
Query:       MMETSP1174-20130828|19793_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|19799_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|19796_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 2166.44
//
Query:       MMETSP1174-20130828|19800_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1174-20130828|19802_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.5    7.3   5.0       0.53    7.3   3.5    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.5   0.00013      0.53      91     155 ..      70     134 ..      30     156 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00013
    TIGR00601  91 pesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGs 155
                  +++ +  t ++t+ +v+++++aaPa+a++ + +  + a+a+a  + ++ a   + + + + v G+
  MMETSP1174-20130828|19802_1  70 THATTHVTTAQTAHTVTSNAAAAPAGATSAGATGGDGAAAPASPAAAAPAGGGAAAAAANDVSGT 134
                  33444444456677777777777777777776666555554433332222222223333445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 746.56
//
Query:       MMETSP1174-20130828|19803_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|19804_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.61
# Mc/sec: 374.33
//
Query:       MMETSP1174-20130828|19805_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1174-20130828|19807_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 807.93
//
Query:       MMETSP1174-20130828|19806_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1174-20130828|19810_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|19809_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1274.38
//
Query:       MMETSP1174-20130828|19812_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.5   1.3      0.027   11.4   0.9    1.0  1  TIGR02992 ectoine_eutC: ectoine utilization protein EutC
      0.029   12.1   5.6       0.04   11.6   3.9    1.1  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR02992  ectoine_eutC: ectoine utilization protein EutC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   1.3e-05     0.027     115     208 ..       2      93 ..       1     101 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
    TIGR02992 115 aaGavaarrlaredasevailGaGvqarlqlealtlvrdiksariwardaakaealalslaselGldvtaat.dvrealsgadiivtttpaetpv 208
                  aa a aa++  r+ +   ++    +q ++q ++l    ++k   + a+++a a ++al+ a+e  l v +++ dv+   s+   + t+  ++t v
  MMETSP1174-20130828|19812_1   2 AAAAAAAKKRNRQSCISSSLAALAQQQEVQQQTLK---KVKVEVLNAKENASAAQVALENAEERHLCVSCMDnDVSCMYSPCKHMATCDDCDTKV 93 
                  7889999*******9999999999*******9986...56677889****************999999887515666667777778877777665 PP

>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.9     2e-05      0.04      26      74 ..      12      63 ..       5      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
    TIGR01144 26 tRqekIaddlasaekakkelalaqkkaqellkeakeea...aeiienAnkrk 74
                 +Rq+ I  +la++ ++++ ++++ kk+++++ +ake+a   +  +enA++r+
  MMETSP1174-20130828|19812_1 12 NRQSCISSSLAALAQQQEVQQQTLKKVKVEVLNAKENAsaaQVALENAEERH 63
                 6999*******************************98622256799999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       447  (0.108971); expected 82.0 (0.02)
Passed bias filter:                      274  (0.0667967); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1174-20130828|19813_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|19815_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 604.60
//
Query:       MMETSP1174-20130828|19817_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-19   67.6   0.0    3.6e-19   67.1   0.0    1.1  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    7.9e-13   46.1   0.0      1e-12   45.8   0.0    1.1  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    1.2e-09   35.9   0.0    1.7e-09   35.4   0.0    1.3  1  TIGR01929 menB: naphthoate synthase
    5.8e-09   32.6   0.0      7e-09   32.4   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    6.5e-09   33.3   0.0    7.6e-09   33.1   0.0    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.9e-05   21.0   0.0    2.2e-05   20.7   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    0.00046   16.2   0.0    0.00059   15.8   0.0    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    0.00079   16.4   0.0    0.00086   16.3   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   6.9e-22   3.6e-19      41     194 ..       7     160 ..       2     173 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 6.9e-22
    TIGR02280  41 ddvrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvG.rarakglallgekldaetaaewGliwqvvddealadevqalaah 194
                   + ++++ltG+   +caG dl+    ++  + dl et+    + +   + ++pkp++vavnG a Ga  + +  +d v+a+e a+f   f+klG+ p+   + l+ rl+G +a  + l   g    a +a++ Gli + v  e l++e+qa a+ 
  MMETSP1174-20130828|19817_1   7 TSTKVVVLTGSDPYYCAGVDLGG-TLRPMMPKDLYETIRATNQKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRLLGpVATERMLGPEGWVPTASEAEALGLISRLVPHESLMQEAQAEAED 160
                  56899****************97.5788999*******************************************************************************4466677788888899************************99875 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0     2e-15     1e-12      47     196 ..       9     161 ..       1     172 [. 0.82

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2e-15
    TIGR03210  47 igvivlagagdkafctggdqsthdg...nydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekka.reiwylcrrysakealamglvnavvphdqldaevkkwcdei 196
                    v+vl+g+ d  +c+g d +         d   +i    +++ ++  + +kp++  v+g aig     +ti+d  iase+a++     k+g    g  + l+ r++g   + r +       +a ea+a+gl+  +vph+ l  e +  +++ 
  MMETSP1174-20130828|19817_1   9 TKVVVLTGS-DPYYCAGVDLGGTLRpmmPKDLYETIRATNQKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRLLGPVATeRMLGPEGWVPTASEAEALGLISRLVPHESLMQEAQAEAEDW 161
                  567888885.88899999987654311145677899999999999999************************************************************87651444455667799******************99998877664 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.3e-12   1.7e-09      43     198 ..       4     160 ..       1     192 [. 0.80

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.3e-12
    TIGR01929  43 redsdiGvviltGaGdkafcsGGdq..kvrgksGykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkka.reifflcrqydaeeaekmGlvnavvelaeleketveware 198
                    +++  vv+ltG+ d  +c+G d    +r ++     +     n  +v  +   +pkp+++ vnG aiG   +   + d  iase+a f    +k+G    G  s  + r++G   + r +   +   +a+eae++Gl+  +v+++ l +e+   a++
  MMETSP1174-20130828|19817_1   4 AASTSTKVVVLTGS-DPYYCAGVDLggTLRPMMPKDLYETIRATN-QKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRLLGPVATeRMLGPEGWVPTASEAEALGLISRLVPHESLMQEAQAEAED 160
                  55677789999996.677999988522566666533333333333.3344455579**********************************************************977624555678899********************9988766665 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.4e-11     7e-09      49     206 ..       6     163 ..       2     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.4e-11
    TIGR02437  49 qsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiia.aGkevraedalkvglvdavvkaekleaaalqllkdain 206
                  +++ k ++lt +   +  G d+   l  ++ p++  ++   + ++vf+ + ++p p + av+G a+G  +     +d  ia++ a    p  klG+ p    +v + rl+G  ++  ++  +G    a +a  +gl+  +v  e l++ a +  +d i+
  MMETSP1174-20130828|19817_1   6 STSTKVVVLTGSDPYYCAGVDLGGTLRPMM-PKDLYETIRATNQKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRLLGPVATERMLGpEGWVPTASEAEALGLISRLVPHESLMQEAQAEAEDWIA 163
                  567788999999999999999999998765.55555556666679******************************************************************8776666643799999******************99998877666655 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.5e-11   7.6e-09      43     174 ..       7     145 ..       1     165 [. 0.80

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.5e-11
    TIGR03189  43 aalravlldaegphfs....fgasveehmpdqcaamlkslhklvi.emldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaascllper.vgkvaaedlly.sgrsidgaegariglvdava 174
                  ++ + v+l    p++     +g ++   mp++  + +++  + v   ++++p p+lvav g  +g  +  ++  + ++a+  a +  p  klgv    +s +l +r +g va+e +l   g   +++e+  +gl++ ++
  MMETSP1174-20130828|19817_1   7 TSTKVVVLTGSDPYYCagvdLGGTLRPMMPKDLYETIRATNQKVFdTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRlLGPVATERMLGpEGWVPTASEAEALGLISRLV 145
                  5566677777777765111145667788999998888877666551689**********************************************99988888888369999999986268888999*******99876 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.3e-08   2.2e-05      50     209 ..      11     170 ..       3     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.3e-08
    TIGR02440  50 lvlvsgkpdsfiagadis.mlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmil.tgkqlrakqalklglvddvvpksilldvavelakkgklkrkalsl 209
                  +v+++g +  + ag d+   l      d  +++ +  q+++  +  +p +++ a+ g+ +g  +  +    + + s  +++++  p  +lg+ p +  +  + rl+g   +  m+   g    a +a  lgl+   vp++ l++ a  +a     +++++++
  MMETSP1174-20130828|19817_1  11 VVVLTGSDPYYCAGVDLGgTLRPMMPKDLYETIRATNQKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIAS--ERATFSTPFSKLGVTPEGCSSVLFDRLLGPVATERMLGpEGWVPTASEAEALGLISRLVPHESLMQEAQAEAEDWIATNRPRTV 170
                  6777777778888888862445555555567888999**************************9988887777766..4678999**********************7655555542466678999********************9999888777777765 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-06   0.00059      58     196 ..       8     145 ..       2     164 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.2e-06
    TIGR02441  58 avksavlisskpgsfvaGadid.mlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldlel..tGkkikadrakklGlvdrlv 196
                  + k  v++++    + aG d++  l+     +  +++    qk+++ + +  kp++ a++G  +G  +  +   +  ia   +++ +++p   lG+ p + +++ + +l +   a + +l   G    a  a  lGl+ rlv
  MMETSP1174-20130828|19817_1   8 STKV-VVLTGSDPYYCAGVDLGgTLRPMMPKDLYETIRATNQKVFDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIAS--ERATFSTPFSKLGVTPEGCSSVLFDRLLGP-VATERMLgpEGWVPTASEAEALGLISRLV 145
                  4454.55555555799****96378899999999********************************99988888888876..46789***************9999999984.44444441257777899999999999998 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06   0.00086      69     212 ..       5     147 ..       1     189 [. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.7e-06
    TIGR03200  69 sdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmv.sailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmig..ceqamvsgtlcepfsahkakrlgiivdvvpa 212
                  ++ + + vv+t+  d  +c+g +           p++  + +r  n+ v ++ ++  kp +  vng  ig        ad  +a++ a+f     k g ++ g ++ ++  ++g    + m+      p +a  a+ lg+i ++vp 
  MMETSP1174-20130828|19817_1   5 ASTSTKVVVLTG-SDPYYCAGVDLGG--TLRPMMPKDLYETIRATNQKVfDTFIEFPKPLLVAVNGPAIGASVTSSTIADAVIASERATFSTPFSKLGVTPEGCSSVLFDRLLGpvATERMLGPEGWVP-TASEAEALGLISRLVPH 147
                  445555555555.4777777766543..4456678888888998887654899***************************************************9999888887222333444333333.57788899999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 872.59
//
Query:       MMETSP1174-20130828|19822_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 573.21
//
Query:       MMETSP1174-20130828|19825_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 230.04
//
Query:       MMETSP1174-20130828|19823_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1067.56
//
Query:       MMETSP1174-20130828|19826_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|19827_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|19828_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.3   2.7       0.02   12.9   1.9    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family


Domain annotation for each model (and alignments):
>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.9   4.8e-06      0.02      56     142 ..      18     105 ..      13     125 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.8e-06
    TIGR02894  56 rkkyeeaielakkqrkerkraaesltled.viefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedye 142
                   ++  e+i  a  +r+++ +  +++t ++   ++++n  + +++ + l+k +e+l ++l+slq++ +e+e+ l + k+   +  ++y 
  MMETSP1174-20130828|19828_1  18 EQEVLEKIGTAEANRRKHGNKPSNITTNEgWNKLMRNCFDRNQQSSMLEKGEEELSDDLRSLQNQAAEIERSLIRTKNAYALALQEYS 105
                  566678888898877766666677777661567889999********************************99998888777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 716.51
//
Query:       MMETSP1174-20130828|19829_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1311.64
//
Query:       MMETSP1174-20130828|19824_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.65
# Mc/sec: 2059.03
//
Query:       MMETSP1174-20130828|19837_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1215.21
//
Query:       MMETSP1174-20130828|19834_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.40
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|19832_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.26s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1659.86
//
Query:       MMETSP1174-20130828|19842_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 860.80
//
Query:       MMETSP1174-20130828|19845_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 353.26
//
Query:       MMETSP1174-20130828|19847_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 152.07
//
Query:       MMETSP1174-20130828|19848_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|19849_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.60
# Mc/sec: 162.79
//
Query:       MMETSP1174-20130828|19850_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1174-20130828|19852_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 802.93
//
Query:       MMETSP1174-20130828|19846_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1835.57
//
Query:       MMETSP1174-20130828|19851_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|19853_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|19854_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|19855_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 705.46
//
Query:       MMETSP1174-20130828|19865_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 595.49
//
Query:       MMETSP1174-20130828|19866_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 1141.71
//
Query:       MMETSP1174-20130828|19872_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|19867_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 182.05
//
Query:       MMETSP1174-20130828|19873_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 186.98
//
Query:       MMETSP1174-20130828|19874_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|19863_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 638.83
//
Query:       MMETSP1174-20130828|19881_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|19876_1  [L=967]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-29   99.9   0.0    4.6e-12   43.4   0.0    5.4  5  TIGR02037 degP_htrA_DO: peptidase Do
    0.00025   17.8   0.0      0.075    9.7   0.0    2.3  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
     0.0025   14.6   0.0       0.17    8.6   0.0    3.1  3  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   3.3e-15   4.6e-12      63     256 ..      14     215 ..       8     220 .. 0.81
   2 !    9.1   0.0   8.7e-05      0.12     257     413 ..     243     398 ..     228     422 .. 0.69
   3 !   13.2   0.1   5.1e-06     0.007      57     140 ..     496     584 ..     467     646 .. 0.77
   4 !   25.0   0.0   1.3e-09   1.8e-06     258     414 ..     775     920 ..     759     929 .. 0.85
   5 !   10.5   0.0   3.3e-05     0.045     269     315 ..     884     930 ..     870     947 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 3.3e-15
    TIGR02037  63 SGviisad.gyvlTNnHvvd.gakeikvklsdgrefkaklvgkDektDiAvlkieak....kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrsglnked..yeeF..IQtDaaiNp..GNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgk.vkrglLGvkiqevtkdlakslgle 256
                  +G++++a+ g++lTN Hvv  g  + + ++ +++e++ + v +D+ +D    +++ k     k++++k++  d+ +vG  +  +Gn  g + ++ +G+   l r+  +  +  y++F      aa N   G SG p++n++G  i +N+       +++  +F +P + vk++++ +++k   v+rg+  +   + t +  ++lgl+
  MMETSP1174-20130828|19876_1  14 TGFVVDAEaGLILTNRHVVStGPVRAEATFINKEEVQLTPVYRDPIHDFGFFRFDPKavkyMKVTEIKMA-PDDAQVGVEIRVVGNDAGEKLSILSGVLARLDRNAPHYATdsYNDFntFYYSAASNTsgGSSGSPVLNMEGCAIALNA----GGSEKAASSFYLPLHRVKRTLDCIRNKSAqVSRGTEHIVWRHQTYNELQKLGLR 215
                  7******************725578999***************************986633344555554.7889*****************************9555433446666222345666644488999********999996....355678889***************987655***998888888887777777775 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 8.7e-05
    TIGR02037 257 kakGal.vaevlkgspAekaGlkaGDvilkv....ngkkiksaadlr..eaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleea 413
                  +  G l v ++++++pA+ + l +GD++l +    + ++ ++ ++++  e++ + ++g+ v++k+ R gke +  v++++ +  + +       e+ g ++++ls  +a++ + + +  gv v ++  +     ag+ +  +i++v++ +  +++  +++++++
  MMETSP1174-20130828|19876_1 243 DGGGLLvVDQLVPNGPAQ-GKLDVGDILLGIklpgDAEEFEDCTNFThlEDVLDSNVGQIVHFKVERGGKELSFGVQVQDLNALTPRIF----LEAGGGTLHPLSFMQARNGNLRLD-CGVYVASA--GFVLDAAGVGQHSIITQVGSVPTPTLSAYQEAMAKL 398
                  555655157899****96.89*******97733333455666655552247999***********************997665555544....566677777777555554443333.66555544..456666677777888888777777777777777665 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 5.1e-06
    TIGR02037  57 kveslGSGviisad.g.yvlTNnHvvdgakeikvklsdgrefkaklvgkDektDiAvlkieak...kklpvvklgdsdklrvGdlvlAi 140
                  + + +G+G++++++ g +++  n +v+   e+ v ++   e+ a+++   + +  Av++ + k    +   +++   + l+vGd    +
  MMETSP1174-20130828|19876_1 496 EWHFVGAGIVVDENrGlVIVDRNTIVNSLGEVAVSFAATVEVPARILYMHPVHNFAVIQYDPKnfqPDTIRAAVLSPEPLKVGDSLEFV 584
                  56779*********885677789999***********************************9843322333455578888888876555 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 1.3e-09
    TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeak 414
                  ++  lv++ l+ sp++k  +++GD++l+++g  + +++d++ a+++ +   +v+l++lR+++ +++kv+ ++ +   +s+       ++gl +++  + +++     e  + +  +    +spa+   lk    i++vn++ev++++++++ +e+  
  MMETSP1174-20130828|19876_1 775 SQVLLVSQRLHASPSAKV-VNEGDLVLAIDGTAVCTFRDVEMAVANKP---AVDLTLLRNEEVMNVKVETTTLDGLGTSRV----LIWAGLLLQPSYRPIQEM---GEGASDIYCSYYLFGSPAHFYNLKACRYITAVNETEVRTLDDMRRTVEHIP 920
                  556799999999**9995.9**********************999865...699***************998777776666....999999999988777553...344467899************************************999765 PP

  == domain 5    score: 10.5 bits;  conditional E-value: 3.3e-05
    TIGR02037 269 gspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkil 315
                  gspA+   lka  +i++vn+ ++++ +d+r+++ +++ g  vkl+ +
  MMETSP1174-20130828|19876_1 884 GSPAHFYNLKACRYITAVNETEVRTLDDMRRTVEHIPDGAPVKLRCV 930
                  89*****************************************9876 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0   0.00084       1.2     183     271 ..     230     321 ..     177     333 .. 0.71
   2 !    9.7   0.0   5.5e-05     0.075     209     270 ..     784     841 ..     750     927 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00084
    TIGR00054 183 erenitleeekelkelgpkielvlsdvvdnspaekaGlkeGDkilki....dg...eklkswrdlvklvkenpeksleikveRngetlslklvpea 271
                  e  n++l  +  l + g    lv+ ++v+n+pa+   l  GD +l i    d    e  ++ + l  ++ +n ++ ++ kveR g+ ls  +  ++
  MMETSP1174-20130828|19876_1 230 EEANQVLTGH-HLSDGGG--LLVVDQLVPNGPAQ-GKLDVGDILLGIklpgDAeefEDCTNFTHLEDVLDSNVGQIVHFKVERGGKELSFGVQVQD 321
                  4455555555.5666666..6899*********9.88*****998763344331124567788888999*******************99887776 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 5.5e-05
    TIGR00054 209 vvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenpeksleikveRngetlslklvpe 270
                  +   + a+   ++eGD +l idg+ +   rd+ ++v +  +  +++ + Rn e++++k+   
  MMETSP1174-20130828|19876_1 784 LHASPSAK--VVNEGDLVLAIDGTAVCTFRDVEMAVAN--KPAVDLTLLRNEEVMNVKVETT 841
                  33333344..6788999999999999999999999988..5678888888888888877544 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.057        78     127     176 ..     259     315 ..     252     324 .. 0.67
   2 !    8.6   0.0   0.00012      0.17     129     189 ..     791     849 ..     774     855 .. 0.82
   3 ?    1.0   0.0     0.025        34     124     165 ..     885     927 ..     872     944 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.057
    TIGR02860 127 eeagiqvGDlilkv....ngek...ikeeedvaklineaggeklkltikRkkkkiek 176
                  ++++++vGD++l +    + e+     + ++++++++++ g+ ++ +++R++k+++ 
  MMETSP1174-20130828|19876_1 259 AQGKLDVGDILLGIklpgDAEEfedCTNFTHLEDVLDSNVGQIVHFKVERGGKELSF 315
                  4689999999998833332333001334455555666666999********999875 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00012
    TIGR02860 129 agiqvGDlilkvngekikeeedvaklineaggeklkltikRkkkkiekklkpvkekeekky 189
                    ++ GDl+l+++g+++ + +dv+  + +  + +++lt+ R+++ ++ k++ +  ++ ++ 
  MMETSP1174-20130828|19876_1 791 KVVNEGDLVLAIDGTAVCTFRDVEMAVAN--KPAVDLTLLRNEEVMNVKVETTTLDGLGTS 849
                  34799******************999865..6799***********999988776665555 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.025
    TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag.geklkl 165
                  sPa+  +++    i++vn++++++ +d+ +++++   g  +kl
  MMETSP1174-20130828|19876_1 885 SPAHFYNLKACRYITAVNETEVRTLDDMRRTVEHIPdGAPVKL 927
                  89999999999*********************99765777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.21s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 2502.62
//
Query:       MMETSP1174-20130828|19878_1  [L=1308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.16s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3923.68
//
Query:       MMETSP1174-20130828|19884_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|19886_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 141.09
//
Query:       MMETSP1174-20130828|19889_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.57
# Mc/sec: 161.57
//
Query:       MMETSP1174-20130828|19890_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 650.52
//
Query:       MMETSP1174-20130828|19891_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|19893_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.2   0.1     0.0025   14.4   0.0    1.4  2  TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.016   13.0   0.0    1.2  1  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain


Domain annotation for each model (and alignments):
>> TIGR00200  cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-06    0.0025      52      82 ..       8      38 ..       4      58 .. 0.85
   2 ?   -1.9   0.0      0.11   2.2e+02       9      26 ..      65      82 ..      58      85 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
    TIGR00200 52 rviriaeeradvlifsGGLGPtkDDLtaeti 82
                 +++ i ++ra++ +  GG GP kDDLt+  +
  MMETSP1174-20130828|19893_1  8 EIMEIVRDRAKIPLDHGGTGPSKDDLTSAFV 38
                 688999*********************8665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.11
    TIGR00200  9 vGdelLlGqivntnaqyl 26
                 vG e+  Gq +  n q+ 
  MMETSP1174-20130828|19893_1 65 VGAEMDNGQWIMDNGQWT 82
                 899999999999999996 PP

>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-06     0.016      52      89 ..       8      42 ..       3      77 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.9e-06
    TIGR00177 52 eikeilrkaveeadvvlttGGtGvgerDvtkealaell 89
                 ei ei+r   ++a + l  GGtG++++D+t   ++e+ 
  MMETSP1174-20130828|19893_1  8 EIMEIVR---DRAKIPLDHGGTGPSKDDLTSAFVDEIR 42
                 3444444...588899999************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 382.77
//
Query:       MMETSP1174-20130828|19894_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 582.11
//
Query:       MMETSP1174-20130828|19896_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 162.45
//
Query:       MMETSP1174-20130828|19895_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1159.03
//
Query:       MMETSP1174-20130828|19900_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   10.8   0.1      0.019   10.7   0.0    1.0  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.7e-06     0.019     903     950 ..      18      65 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.7e-06
    TIGR00618 903 lqkvvrlanqseirfhgryllkskaarkeklkallvveaatdsvRpve 950
                  +   + +  +s++ + +r+++ s a +ke+  a +v+ a t+ + p++
  MMETSP1174-20130828|19900_1  18 APDEIFRKAMSHVTLLLRVAQASRADTKEETCAAVVDHARTQRTKPTR 65 
                  556677889*************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 260.41
//
Query:       MMETSP1174-20130828|19897_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1230.60
//
Query:       MMETSP1174-20130828|19905_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|19898_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1080.66
//
Query:       MMETSP1174-20130828|19901_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00025   17.6   1.6     0.0056   13.2   0.0    2.6  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.4e-06    0.0056     117     153 ..      83     119 ..      46     123 .. 0.84
   2 !    1.8   0.4    0.0037        15     351     424 ..     230     302 ..     204     316 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-06
    TIGR00990 117 nlseeerkkyaaklkekGnkayrnkdfdkaielyska 153
                   l  e r +y++k++ +Gn++++ kd+  ai  ys+a
  MMETSP1174-20130828|19901_1  83 MLPMEARFQYSLKMRLAGNEYFKLKDYPRAIRRYSRA 119
                  46678899***************************98 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.0037
    TIGR00990 351 ladlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydk 424
                   + + k+ie+   + ++  k+ s +++  +  + + d+d+ l+  + +++    + q +f  +++++  ++y+ 
  MMETSP1174-20130828|19901_1 230 IKKILKAIEMRNPVVKAAKKMQSEMIKAKEKAE-KGDLDEDLEAAPPKPSCNTSKVQREFAVDKWDDLIQEYED 302
                  456778999987777788888877776554433.4689999999999999999999999999999999888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1390.71
//
Query:       MMETSP1174-20130828|19907_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 311.12
//
Query:       MMETSP1174-20130828|19909_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|19908_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 746.42
//
Query:       MMETSP1174-20130828|19911_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 455.13
//
Query:       MMETSP1174-20130828|19913_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1174-20130828|19914_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|19910_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 546.29
//
Query:       MMETSP1174-20130828|19916_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1174-20130828|19918_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 958.86
//
Query:       MMETSP1174-20130828|19925_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|19924_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 808.97
//
Query:       MMETSP1174-20130828|19928_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|19930_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|19935_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 156.74
//
Query:       MMETSP1174-20130828|19932_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-17   59.2  14.4    1.4e-12   45.1   5.5    2.5  2  TIGR00887 2A0109: phosphate:H+ symporter
    5.7e-14   49.6  22.6      1e-09   35.5   5.2    3.1  3  TIGR00898 2A0119: cation transport protein
    9.2e-14   49.0  26.7    2.5e-07   27.8   4.9    3.1  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.5e-11   41.8  21.8    1.4e-08   32.1   6.6    2.1  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    2.8e-08   30.6  36.3    5.9e-08   29.5  14.0    2.4  3  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.9e-07   28.3   1.8    1.9e-07   28.3   1.2    3.4  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    9.6e-07   25.9  18.2    9.6e-07   25.9  12.6    2.3  2  TIGR00893 2A0114: D-galactonate transporter
    0.00026   16.8   1.6    0.00026   16.8   1.1    3.0  3  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
  ------ inclusion threshold ------
       0.28    8.7   9.9       0.37    8.3   5.0    2.3  2  TIGR00267 TIGR00267: TIGR00267 family protein


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3     9e-07   0.00041      54     140 ..      13      93 ..       2      99 .. 0.74
   2 !   45.1   5.5   3.2e-15   1.4e-12     277     455 ..     224     391 ..     196     414 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9e-07
    TIGR00887  54 pssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiit 140
                   +  ++l++ +a +g +lg ++fg ++d +gr++     l   + +t  s   +   +l  v + +   +++gvG gg  plsa++ 
  MMETSP1174-20130828|19932_1  13 TTVEDSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFAL---VTTTTGS---FLAGTLGCVPLQIGLHVVMGVGLGGTIPLSAAMA 93 
                  4455689999**********************86433333...3333333...33345566777778899**************976 PP

  == domain 2    score: 45.1 bits;  conditional E-value: 3.2e-15
    TIGR00887 277 fvtkfskrkhgklLlGtavsWflLDiafYgvnLnqkvilkai.GysetaeknnayeelyktavgnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsekgllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkg 455
                  f+++ ++  +  +L   a+ Wf+ ++  Yg++++   i++ i G  +  ++   +          ++i++++ v     +  ++  +  +   + G  + ++ f+v+++  +++s+ + + l  ++ +     P    FivPa +FP+ lR+ +hG +aa+ kvGa+i++++  ++ d  
  MMETSP1174-20130828|19932_1 224 FLKRVKAEGYLGTLGACALYWFFFNVVTYGLAVYAPEIVEDIiGTLSVRQD---ILL-------MVLITVVSLVSAL-TSLPIIRYFQARRTLILGMGLSAIAFAVMGAIVDRISSASQITLICIVIYCVQL-PGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFGTPIVIDYF 391
                  44444444455555556789**************99999865155422222...222.......3444444444432.34445555554555567889999****************999999998877776.999***********************************998887744 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.9   2.9e-07   0.00013     128     203 ..      17      92 ..      11      99 .. 0.89
   2 !    4.9   0.0    0.0044         2     221     258 ..     148     195 ..     140     217 .. 0.74
   3 !   35.5   5.2   2.3e-12     1e-09     294     466 ..     202     384 ..     193     416 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.9e-07
    TIGR00898 128 vkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvL 203
                    l+ s   +G +lG +++Gq+ D  GR ++Ll++ + t+  ++l+         + l ++ Gvg++g ++ +  +
  MMETSP1174-20130828|19932_1  17 DSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLGCVPLQIGLHVVMGVGLGGTIPLSAAM 92 
                  67999***********************************999999999999999999999999999988776655 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0044
    TIGR00898 221 evffalGllllallAYlird........WRwLll...lvslPlvlflvl 258
                  +++ ++G lll llAY++ d        WR L +   +vslP + +l l
  MMETSP1174-20130828|19932_1 148 NYVQTIGKLLLYLLAYILVDtplpyysqWRLLNVmggVVSLPAIGML-L 195
                  56779************999999*********994444788876443.3 PP

  == domain 3    score: 35.5 bits;  conditional E-value: 2.3e-12
    TIGR00898 294 paevlslslekelsekkakkaslldllrtpklrkttlllmllwfttafsYygLvldleelggn.........iYldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk.llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflv 466
                  ++e+ + s e e+  +     s+l+ +     + t+ ++ l wf  +++ ygL+   +e+  +         + l +++ ++v l ++l+ l +i+++  r t+++ + l ++a+ ++ ++ ++++ + +++l+++   ++     +++++ a L+PT +R+   g+++++a+vG++i  f  
  MMETSP1174-20130828|19932_1 202 SQEFVRASRERERVRRDVYDCSFLKRVKAEGYLGTLGACALYWFFFNVVTYGLAVYAPEIVEDiigtlsvrqDILLMVLITVVSLVSALTSLPIIRYFQARRTLILGMGLSAIAFAVMGAIVDRISsASQITLICIVIYCVQLPGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFGT 384
                  67778888777777777788899999999999999999*********************************989999999******************99999999999999999999999999876899***********************************************977643 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   4.9   5.5e-10   2.5e-07      49     132 ..      12      95 ..       7     100 .. 0.92
   2 !   20.3   8.1     1e-07   4.6e-05     251     394 ..     235     384 ..     145     388 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.5e-10
    TIGR00895  49 ldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsE 132
                  l++ve   l sa+L+G++lG ++fg + D +gR   ll+++++ + ++ +++    v+  + l ++ g+GlGg++p   a++ E
  MMETSP1174-20130828|19932_1  12 LTTVEDSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLGCVPLQIGLHVVMGVGLGGTIPLSAAMAFE 95 
                  6778888899******************************************9999998889**************99999877 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1e-07
    TIGR00895 251 atllLwlly.flllvvvYlltsWlPkLlvea..gaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs..tlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpila 394
                   tl   +ly f+ +vv Y+l+ + P ++ +   + s+ +  ll+vl+ v  ++++l    ++  ++ + +l+l++ l+a+   ++++     s++  ++l++i+  +v+ + +++  + a ++pt+ Ra   g a ++ ++ga+ig+  +
  MMETSP1174-20130828|19932_1 235 GTLGACALYwFFFNVVTYGLAVYAPEIVEDIigTLSVRQDILLMVLITVVSLVSALTSLPIIRYFQARrTLILGMGLSAIAFAVMGAivDRISSASQITLICIVIYCVQLPGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFGT 384
                  34444444416899***********988886335678899999***********99999999999999555555556666555555534455667778899999999999999999999***************************9755 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.0   3.1e-06    0.0014      48      87 ..      28      67 ..      20      95 .. 0.84
   2 !   32.1   6.6     3e-11   1.4e-08     147     375 ..     153     388 ..     137     412 .. 0.58

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.1e-06
    TIGR00883 48 RplGaivfGalgDrlGRkktLvvtlllMgigtvligllPs 87
                  +lG i+fG++gD +GR+  L+ +l++ ++g++l g l  
  MMETSP1174-20130828|19932_1 28 AILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLGC 67
                 579******************************9776543 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 3e-11
    TIGR00883 147 laalvvlllsallseealleWg.WRiPFlvsvv..lvligLylRlkleEtpvfekekekkkkear..kkriplaevltk..krkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllal....illllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynla...sviggglapvia 375
                  +++l+++ll ++l +  l  +  WR+  +++ v  l +ig++l + l+E+++f +++++++ + r    + ++ + +++  +  +l +++++ +  +v+ Y l +y+++ ++   + +ls ++ +l+++l++    +++l  +p++ ++     rr++++ ++++a+++a  ++ a+++  s    ++l++++   v++   ++ ++ a lfpt++R+   + a+++a   +vig+  +p++ 
  MMETSP1174-20130828|19932_1 153 IGKLLLYLLAYILVDTPLPYYSqWRLLNVMGGVvsLPAIGMLLHRGLNESQEFVRASRERE-RVRrdVYDCSFLKRVKAegYLGTLGACALYWFFFNVVTYGLAVYAPEIVEDIIG-TLSVRQDILLMVLITvvslVSALTSLPIIRYFQ---ARRTLILGMGLSAIAFA--VMGAIVDRISSASQITLICIVIYCVQLPGIAVFIVPATLFPTHLRAGCHGAAAAVAkvgAVIGAFGTPIVI 388
                  567777888888888887766449999999865125689**************99754444.333113334443333321133444455556666667777777777777777766.444444444444433000034444444444443...57887777777777776..88888887755555555555544443333344467789*******98777777766111445555556554 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   2.3   4.4e-05      0.02      97     171 ..      13      84 ..       5      91 .. 0.87
   2 ?   -3.5   0.1       1.3   5.8e+02     195     227 ..     146     180 ..     141     195 .. 0.64
   3 !   29.5  14.0   1.3e-10   5.9e-08     333     500 ..     256     416 ..     229     418 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.4e-05
    TIGR00879  97 sssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGi 171
                  ++++ +l+ s++l+G++ g ++ g ++d+ gr  +ll++ +   +g++l +       v++ i   v++G g+G+
  MMETSP1174-20130828|19932_1  13 TTVEDSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLG---CVPLQIGLHVVMGVGLGG 84 
                  6777888889***************************************94333...377899999****99996 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.3
    TIGR00879 195 lyqlaitfGilvaaifg..sgklvanntlgwripl 227
                  + + + t+G l+ +++     ++ + + ++wr+++
  MMETSP1174-20130828|19932_1 146 YANYVQTIGKLLLYLLAyiLVDTPLPYYSQWRLLN 180
                  55566677777777777665556666777777655 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.3e-10
    TIGR00879 333 yYsptifenl.Gvst.dtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflp 500
                   Y+p+i e++ G  +  + +l  +++ +v +++ + +++++++f  r+ l++G+  +ai++ v+g ++ +        +s   i++i+++i + +l  g  v+++ + +fp+++R+ +   a+a++ ++++i a+ +pi  +  +g+++vF ff+a  ++++++v+  +p
  MMETSP1174-20130828|19932_1 256 VYAPEIVEDIiGTLSvRQDILLMVLITVVSLVSALTSLPIIRYFQARRTLILGMGLSAIAFAVMGAIVDRI-------SSASQITLICIVIYCVQL-PGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFGTPIVID-YFGVAKVFEFFAACLLICFFVVIYAVP 416
                  599999998548777778899999999**************************************333332.......355567777777766666.455689999************************************.9*******9999887777777777776 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   1.2   4.1e-10   1.9e-07      44     131 ..      12      99 ..       3     106 .. 0.94
   2 ?   -2.5   5.7      0.98   4.5e+02     150     229 ..     160     267 ..     141     418 .. 0.48

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 4.1e-10
    TIGR00891  44 rttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPk 131
                  +tt++ + l saal+   +G +++G ++D vgr+  l+ ++v  + +++l++        +++ +v+G+g+gG   l+aa+a ed+ +
  MMETSP1174-20130828|19932_1  12 LTTVEDSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLGCVPLQIGLHVVMGVGLGGTIPLSAAMAFEDWDV 99 
                  6889999999********************************************99999**************************976 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.98
    TIGR00891 150 vlaavvysvvvnvlgdsWriLfflsil..piilalflrkrvpeaevwkeklkakklvktrvdkvlggealvkaivktkava...........................m 229
                  +la ++     +++   Wr+L +++ +  ++ + ++l + ++e++++ ++   ++ v+ +v +    + + ++ +   + a                            
  MMETSP1174-20130828|19932_1 160 LLAYILVDTPLPYYS-QWRLLNVMGGVvsLPAIGMLLHRGLNESQEFVRASRERERVRRDVYDCSFLKRVKAEGYLGTLGAcalywfffnvvtyglavyapeivediiG 267
                  555555555555555.688887776431134456666777788888888888888887777665443333332222222222344444444444444444443333330 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   1.4     0.007       3.2     246     321 ..      10      82 ..       1     101 [. 0.70
   2 !   25.9  12.6   2.1e-09   9.6e-07     120     399 .]     144     415 ..     139     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.007
    TIGR00893 246 rglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalval 321
                  r l++ e +ll s + + +++gm+ +g + d + + +  l++a  t+ ++  ++ +l  +    +  + ++++v l
  MMETSP1174-20130828|19932_1  10 RSLTTVEDSLLDSAALMGAILGMIIFGQIGDNVGRHT-GLLFALVTTTTGSFLAGTLGCVP--LQIGLHVVMGVGL 82 
                  55677888999999999999************99997.99999999999844433332222..2344444444444 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 2.1e-09
    TIGR00893 120 vsifnsaqalgaiiggplvgwilvefs......WqlvFiieGvlai.ilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerg.lslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsvlllv 399
                  v++ n  q +g++++  l+++ lv         W+l+ ++ Gv+++  +g+l+   +++ +e   +  + +++  v +     +    s  k+ +   +L    + + al +f  n+++y++ +++p + ++  g ls+ +  ll +l  +v +v+ ++  ++  +++ ++  l+l   + +ia  ++++ +i+     s++ +++l+++++ + +l +++++ v++  ++    +   G+  +++++++++g+  +  + +  G +a+++ + aa  li  ++v+++v
  MMETSP1174-20130828|19932_1 144 VAYANYVQTIGKLLLYLLAYI-LVDTPlpyysqWRLLNVMGGVVSLpAIGMLLHRGLNESQE---FVRASRERERVRR-----DVYDCSFLKRVKAEGYLGT--LGACALYWFFFNVVTYGLAVYAPEIVEDIIGtLSVRQDILLMVLITVVSLVSALTSLPIIRYFQARR-TLILGMGLSAIA--FAVMGAIVD--RISSASQITLICIVIYCVQLpGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFGTPIVIDYFG-VAKVFEFFAACLLICFFVVIYAV 415
                  666666666666666666663.4443346666666666666666653456666666665555...3333333333333.....1222223344444444443..33567889999****************987637999999999999******************9996.899999999888..455555554..579999999*****999999999*********************************************.*******************9987 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.1   5.7e-07   0.00026     202     276 ..      15      89 ..       5      99 .. 0.91
   2 ?    1.1   0.1     0.031        14     450     474 ..     240     264 ..     202     278 .. 0.71
   3 ?    1.4   3.9     0.026        12     647     725 ..     327     407 ..     277     418 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.7e-07
    TIGR01299 202 snkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipiv 276
                   ++ ll +   +g ++g +++g + d++gr+  ll +l   +  +fl+  +    + +   ++ gvg+gg+ip+ 
  MMETSP1174-20130828|19932_1  15 VEDSLLDSAALMGAILGMIIFGQIGDNVGRHTGLLFALVTTTTGSFLAGTLGCVPLQIGLHVVMGVGLGGTIPLS 89 
                  56778999999****************************************999999999*************75 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.031
    TIGR01299 450 ltivwftlsfsyyglsvwfpdvikh 474
                      wf +    ygl+v+ p++++ 
  MMETSP1174-20130828|19932_1 240 CALYWFFFNVVTYGLAVYAPEIVED 264
                  34579***************99876 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.026
    TIGR01299 647 sesamiallclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgil...iftslvsitkaipillasavlvl 725
                  s +  i+l+c+          a+ ++   l+p+  ra + g   a++k+ av+g     i   + +++k    ++a++ l++
  MMETSP1174-20130828|19932_1 327 SSASQITLICIVIYCVQLPGIAVFIVPATLFPTHLRAGCHGAAAAVAKVGAVIGAFgtpIVIDYFGVAKVFE-FFAACLLIC 407
                  55667888887765555555677889999***********************97532227777778887665.456666666 PP

>> TIGR00267  TIGR00267: TIGR00267 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.36   1.7e+02      28      72 ..      75     119 ..      51     130 .. 0.76
   2 ?    8.3   5.0   0.00081      0.37      83     156 ..     270     341 ..     259     355 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.36
    TIGR00267  28 sviiaaGlgGGvanglsnvlGaliaeraeeerelreleksllvee 72 
                  +v++  GlgG + ++ + ++  +    a+  r+ ++ e   lv++
  MMETSP1174-20130828|19932_1  75 HVVMGVGLGGTIPLSAAMAFEDWDVAGASRSRDDMKEESGALVND 119
                  588899999999999999998888888888888777777666664 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00081
    TIGR00267  83 karrrvilsglidGlstilGsvvPvlPflv.fdvktalivavsltliallvlGvylGrisrenvlisslkvvvig 156
                   +r+ ++l  li  +s  l s++  lP +  f+ + +li+ ++l++ia++v+G ++ ris    + + + +v+  
  MMETSP1174-20130828|19932_1 270 SVRQDILLMVLITVVS--LVSALTSLPIIRyFQARRTLILGMGLSAIAFAVMGAIVDRISSASQI-TLICIVIYC 341
                  5677777777887776..56999999999889999************************986543.344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.50
# Mc/sec: 1111.35
//
Query:       MMETSP1174-20130828|19934_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-07   27.8   0.0     0.0083   12.8   0.0    2.2  2  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    3.4e-06   24.0   0.1    8.1e-06   22.8   0.0    1.5  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    3.8e-05   20.6   0.0      0.035   10.8   0.0    2.2  2  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     7e-06    0.0096      61     129 ..      88     154 ..      67     187 .. 0.82
   2 !   12.8   0.0     6e-06    0.0083     139     237 ..     226     331 ..     221     333 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7e-06
    TIGR02160  61 adgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivk 129
                  + + + + vk+ + G++s+ +   + a  tl+   P G   ++   e a+h +++ aG+G +P++ i+ 
  MMETSP1174-20130828|19934_1  88 SRDRLCLLVKRYSAGVMSNLLA-SLEAEATLQTKGPMGGIDPHWLHE-ANHILLIGAGTGAAPMIQIIY 154
                  5566777899999999999775.69999***********99987766.89****************986 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 6e-06
    TIGR02160 139 tftlvyanrrsasvmfaeeladl...kdkypqrfallhvlsr....eereaellsGrldgeklkalldslievdevdeaflcGPaalvddaedalkalGvdsekvh 237
                  ++ l+ anrr+ ++ +  +l+ l   +     r++++ +ls     e++  + l+Gr+ +  ++ ll+       ++++  cGP a+ d + + ++ lGv++e  h
  MMETSP1174-20130828|19934_1 226 HVHLLLANRRECDIPMPVHLDALarrQSSELLRVRVHLMLSTpptdEDKAWPGLKGRVTAATVRPLLNPEALEAGTQRVVWCGPLAFNDTVGEIVEELGVPAEATH 331
                  57899999999999665555555100556677999*****9633336777789***********99997666666777888********************99877 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.25   3.5e+02      98     128 ..      51      81 ..      40      89 .. 0.57
   2 !   22.8   0.0     6e-09   8.1e-06     233     295 ..     100     162 ..      94     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.25
    TIGR03224  98 qddeaasegekvseveeveaaqkgstlapws 128
                  + +e+ + ++++++ +++++a++++t+ p++
  MMETSP1174-20130828|19934_1  51 EAEEEGTAAAAAASTTAIRTAKTTTTTRPYT 81 
                  2333334444444555566777777766665 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 6e-09
    TIGR03224 233 vrgvasnylcdlkkgdkvqvigpfgstflmpnhpessilmictgtgsapmramterrrrrrak 295
                    gv sn l  l+    +q  gp+g       h + +il+i +gtg+apm  +  + +r r++
  MMETSP1174-20130828|19934_1 100 SAGVMSNLLASLEAEATLQTKGPMGGIDPHWLHEANHILLIGAGTGAAPMIQIIYYLQRTRRH 162
                  579***********************999999******************9998877666554 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   2.6e-05     0.035     237     315 ..      99     176 ..      75     190 .. 0.76
   2 !    7.7   0.0   0.00023      0.32     330     396 ..     259     328 ..     245     331 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.6e-05
    TIGR01941 237 ippGkmssyifslkpGdkvtvsGpfG..effvkdtdaelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevf 315
                    +G+ms  + sl +   +  +Gp G  + +   + ++++ ig G+G+ap+   i+ l    +++r+++     +s++++ 
  MMETSP1174-20130828|19934_1  99 YSAGVMSNLLASLEAEATLQTKGPMGgiDPHWLHEANHILLIGAGTGAAPMIQIIYYLQ---RTRRHLDNEANQKSQQQQK 176
                  578***********************444577788889999**********87666543...3556666655555555555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00023
    TIGR01941 330 fkyhvalsdp.lped.nwtGytgfihnvlyenylkdhda.pediefymcGpplmnaaviklledlGvere 396
                   + h++ls p   ed  w G  g +  +     l+             cGp  +n +v +++e+lGv+ e
  MMETSP1174-20130828|19934_1 259 VRVHLMLSTPpTDEDkAWPGLKGRVTAATVRPLLNPEALeAGTQRVVWCGPLAFNDTVGEIVEELGVPAE 328
                  678999*98724566358999999998888877754332022345677*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1296.60
//
Query:       MMETSP1174-20130828|19937_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.0   0.1     0.0029   14.5   0.1    1.1  1  TIGR00225 prc: C-terminal processing peptidase
     0.0097   12.7   0.2      0.016   12.0   0.1    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.4e-06    0.0029      49     102 ..      76     139 ..      63     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-06
    TIGR00225  49 eleGiGiqvqmedd.........eivivsplegsPAekag.ikpgDkIikvdgksvagmeldda 102
                  e  G+G++++ +++         +i+++ ++ g+ A+ +g ++++D +++v+g s  + + + a
  MMETSP1174-20130828|19937_1  76 EEGGLGLELEDKSKdvgigdqrrRIIVKRVIPGGAAAASGkVSAEDVVVSVNGVSLEADRFEGA 139
                  55788888888877788999898***************999*************9988777766 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   7.6e-06     0.016     234     292 ..      76     132 ..      66     138 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-06
    TIGR02037 234 krglLGvkiqevtkdlakslgleka.kGalvaevlkgspAekaG.lkaGDvilkvngkkik 292
                  + g LG ++++ +kd    +g+ ++ +  +v +v++g++A+ +G + a+Dv+++vng +++
  MMETSP1174-20130828|19937_1  76 EEGGLGLELEDKSKD----VGIGDQrRRIIVKRVIPGGAAAASGkVSAEDVVVSVNGVSLE 132
                  566666666655555....455555378999******998877769***********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1284.95
//
Query:       MMETSP1174-20130828|19942_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|19941_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1592.38
//
Query:       MMETSP1174-20130828|19947_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|19949_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 630.61
//
Query:       MMETSP1174-20130828|19948_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-23   79.7   0.0    3.2e-23   79.4   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-07   29.4   0.0    2.4e-07   28.2   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.6e-26   3.2e-23       2     241 ..     104     331 ..     103     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 1.6e-26
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlyk.qLsPvdvslPsaia.ghpLgevLRkalnkdvrqRaasaeala 241
                  tg + a+k l  +  e   +    + e+ + a+L hPniv+L++   a++  ++ v e+ +G  l ++L   G     e   ++ +++  +   h++G+vhRDLk +ni+    d +++ kv DFG++  l+  +d            +G+P Y aPe L g+    k Dl++ G+i    L G +   G++ a+v+   + +  +++l +    +    + +R  l+++++ R  +aea+a
  MMETSP1174-20130828|19948_1 104 TGTAFALKTLTLN-EEVDAQNLDLKNELRIMAALDHPNIVRLVETFYAGP-NVYLVMELCAGGELFDRLIERGQFKEDEVRVMVRKIISVIKFCHERGIVHRDLKLENILF---DSTNEPKVCDFGLSKYLTT-GDFL-------DQKVGTPYYIAPEVLEGNY-DEKVDLWSVGVITYMLLSGLPPFPGDTDADVIRAvRCGALNLALEEFRGlSSDAIDFMRALLERNTKRRPSAAEAMA 331
                  6777888888666.45556667799*************************.89**********************988877777789**********************97...667788********99974.5533.......3458***********9975.689****************************9753678888888765321334457899999999999999998875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.2e-10   2.4e-07      45     139 ..     127     233 ..     114     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.2e-10
    TIGR03724  45 rkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk....s 139
                  ++E r+++++ +  +   v  ++   +  +vme   g +l d l e+ +        +++++  ++  +H+ givh Dl  +Ni++ ++++  + DfGL+k+    +
  MMETSP1174-20130828|19948_1 127 KNELRIMAALDHPNIVRLVETFYAGPNVYLVMELCAGGELFDRLIERGQfkedevrVMVRKIISVIKFCHERGIVHRDLKLENILFdSTNEPKVCDFGLSKYlttgD 233
                  67888888888877766666666677899999999988887766655555788787789999999*********************5578899********954333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.57
# Mc/sec: 1506.50
//
Query:       MMETSP1174-20130828|19953_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 392.67
//
Query:       MMETSP1174-20130828|19956_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.51
# Mc/sec: 152.69
//
Query:       MMETSP1174-20130828|19957_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   14.0   1.3      0.007   13.9   0.9    1.0  1  TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family


Domain annotation for each model (and alignments):
>> TIGR03363  VI_chp_8: type VI secretion-associated protein, ImpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.9   1.7e-06     0.007     154     259 ..       9     113 ..       3     131 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-06
    TIGR03363 154 dyeraqvenlerkdpeeakaaieegklseeeleealldts.kdflqakaealeaalealqalealvderlGsaapslsplrkaLqallrlverlakdkgleaeeapa 259
                  +++++     e +++++   ++ee  +s+  l ++ ++ + +  l +k   + + +++l++ ++lv    Gs++p + +lr+++q+l++ +  ++++ + +ae+++a
  MMETSP1174-20130828|19957_1   9 SWRSVFA--EEFRRNNNVSLQFEELVQSHSSLLRQNKNLAhHCRLVEKEVIILKHERNLEQQQNLVGGPQGSEGPGVLELRTKIQQLQEELTSHYREDAEAAETKLA 113
                  5666663..33444555566678887777777777666550556778888899999*********************************999999997655444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 424.94
//
Query:       MMETSP1174-20130828|19958_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 365.80
//
Query:       MMETSP1174-20130828|19963_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.70
# Mc/sec: 214.95
//
Query:       MMETSP1174-20130828|19965_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 761.94
//
Query:       MMETSP1174-20130828|19966_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 759.94
//
Query:       MMETSP1174-20130828|19968_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.60
# Mc/sec: 180.39
//
Query:       MMETSP1174-20130828|19971_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|19975_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|19980_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 230.21
//
Query:       MMETSP1174-20130828|19981_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-15   53.2   0.0      6e-15   53.0   0.0    1.0  1  TIGR01051 topA_bact: DNA topoisomerase I
     0.0031   12.9   0.0     0.0036   12.7   0.0    1.1  1  TIGR01054 rgy: reverse gyrase


Domain annotation for each model (and alignments):
>> TIGR01051  topA_bact: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   2.9e-18     6e-15       1      65 [.      12      82 ..      12      83 .] 0.88

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 2.9e-18
    TIGR01051  1 lvivESPaKaktikkyLg.keyeveasvGHirdlpksasdvdek......yarlgvdvekdfepeyvvlkek 65
                 lvivESPaKa+ti+k+L+ +ey v    GHirdl +  + ++++      y   g+dv ++f+p+yv l++k
  MMETSP1174-20130828|19981_1 12 LVIVESPAKARTIEKFLPaDEYMVDFCLGHIRDLGAP-KTLPKEftknneYGFTGIDVFNEFSPQYVDLHSK 82
                 8*****************99**************877.5555555666889999************988776 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.8e-06    0.0036     600     617 ..      11      28 ..       2      33 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-06
    TIGR01054 600 vLlvvesPnkaRtianFf 617
                   L++vesP kaRti +F 
  MMETSP1174-20130828|19981_1  11 RLVIVESPAKARTIEKFL 28 
                  599************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|19982_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.53
# Mc/sec: 136.97
//
Query:       MMETSP1174-20130828|19984_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 323.59
//
Query:       MMETSP1174-20130828|19988_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|19990_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 278.64
//
Query:       MMETSP1174-20130828|19996_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.8   0.1       0.03   12.0   0.1    1.4  1  TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase
       0.02   12.4   0.1       0.27    8.8   0.0    2.2  2  TIGR02647 DNA: TIGR02647 family protein


Domain annotation for each model (and alignments):
>> TIGR02057  PAPS_reductase: phosphoadenosine phosphosulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.5e-05      0.03     104     143 ..     103     142 ..      83     158 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.5e-05
    TIGR02057 104 ekdvekydqiakvePlqralkeLnavawltGrrrdqasar 143
                   kd+++ d+i k+e  q+   e ++++  +G+ rdq+s+r
  MMETSP1174-20130828|19996_1 103 LKDIQSRDDIGKIEDWQKLRAEGKIQTPTSGLERDQGSER 142
                  4899**********************************99 PP

>> TIGR02647  DNA: TIGR02647 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00013      0.27      11      55 ..       8      53 ..       6      72 .. 0.87
   2 ?    1.6   0.0     0.024        49      50      63 ..      74      87 ..      56      98 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00013
    TIGR02647 11 lelLalFnldstqeG.lkvhstAsealvaAakRLyekgLtdqpDGG 55
                 l  L+lF  + t+eG lk+ +t ++ ++    R+   g  d   GG
  MMETSP1174-20130828|19996_1  8 LSALILFAASRTAEGfLKIPHTNNQIAIGGRDRIIRNGFFDSMFGG 53
                 56799**********78*****************999999988887 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.024
    TIGR02647 50 dqpDGGYLtslGle 63
                  q   GYLt++  e
  MMETSP1174-20130828|19996_1 74 RQKGAGYLTEEDEE 87
                 46677****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.66
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|19999_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 269.48
//
Query:       MMETSP1174-20130828|20001_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 581.73
//
Query:       MMETSP1174-20130828|20000_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1758.67
//
Query:       MMETSP1174-20130828|20007_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 312.37
//
Query:       MMETSP1174-20130828|20006_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|20013_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|20012_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|20015_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|20018_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   10.1   0.0      0.031   10.1   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.6e-06     0.031     127     158 ..      20      51 ..       9      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 7.6e-06
    TIGR00870 127 eftkgitalilAihkqnyeivklLlekgasve 158
                  e ++g++al  A++k+ +   ++L+++ga+v+
  MMETSP1174-20130828|20018_1  20 ENSFGHSALSWAAVKERLVQMEALIKRGADVN 51 
                  5689***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.55
# Mc/sec: 148.79
//
Query:       MMETSP1174-20130828|20021_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 762.60
//
Query:       MMETSP1174-20130828|20020_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1078.45
//
Query:       MMETSP1174-20130828|20022_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 440.96
//
Query:       MMETSP1174-20130828|20025_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 366.16
//
Query:       MMETSP1174-20130828|20026_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-16   56.8   0.0    6.5e-16   56.4   0.0    1.1  1  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   1.6e-19   6.5e-16       3     186 ..     111     307 ..     109     315 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.4 bits;  conditional E-value: 1.6e-19
    TIGR01388   3 ttddeLatvcealrtedvvalDTEFvRerTfyPklgLiqvadge...elaliDPlviidlspllell....adesvvKvlHaase.DlevfknlfgvlPkPlfDTqiaaallGlgesvgydklVkevleveld.....Kse.srtDWlaRPLtdkqleYAaaDVtyLlelyekLserleeegrlaaleeeaelltdkr 186
                  +t ++L+ + + l+++++ a D E    r ++   +L+q+   e   +  ++D l ++ +  + + l      + ++Kv Ha s  D+  + + fg++ + l+DT  aa +lG  +++g + l  ++  + ld     Ks+ + +DW+ RPLt++ +eYA+ DV +Ll+l + L+++l e++     + +++  ++++
  MMETSP1174-20130828|20026_1 111 ETLADLDLLARCLESSPAFAFDVECNSLRSYHGVTCLLQISVLEptpRDFIVDVLHKDVWPHVGKCLgpafSSPLILKVAHAVSGcDVPSLFRDFGIVIVNLMDTYEAACVLGE-KGLGLAYLLSHYGAAPLDhlsslKSKyQCADWRIRPLTPEMMEYAVTDVHFLLPLCRVLEQHLLEMDNEPEHDCDMTSSNMNE 307
                  6678899999999**************************9865422256899*999998866555542222899********8744***99999******************95.7899999********999333333332458**********************************9998876666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1109.91
//
Query:       MMETSP1174-20130828|20024_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-70  233.4   0.0    1.4e-67  225.1   0.0    2.4  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    1.5e-60  201.7   0.0    7.6e-58  192.9   0.0    3.2  3  TIGR03263 guanyl_kin: guanylate kinase
    9.6e-57  189.5   0.1    1.3e-55  185.8   0.0    2.3  2  TIGR01360 aden_kin_iso1: adenylate kinase
    1.8e-44  149.8   0.3      1e-32  111.4   0.0    3.5  3  TIGR01351 adk: adenylate kinases
    5.6e-13   46.8   0.0      4e-10   37.5   0.0    2.8  3  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
    1.2e-07   29.4   0.1       0.05   11.1   0.0    3.8  4  TIGR00041 DTMP_kinase: thymidylate kinase
      2e-05   22.5   2.1     0.0014   16.5   0.0    2.9  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    2.5e-05   21.9   0.2      0.013   13.0   0.0    2.4  2  TIGR00017 cmk: cytidylate kinase
     0.0089   12.5   0.0      0.017   11.6   0.0    1.4  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
  ------ inclusion threshold ------
      0.012   12.5   0.2       0.26    8.1   0.0    2.2  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.016   12.7   0.0      0.046   11.2   0.0    1.7  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      0.021   10.6   0.1        1.2    4.8   0.0    2.1  2  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.023   10.4   0.0      0.031   10.0   0.0    1.1  1  TIGR00618 sbcc: exonuclease SbcC
      0.024   11.1   0.0      0.035   10.6   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      0.028   10.7   0.0      0.042   10.1   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24
      0.034   11.7   0.1       0.09   10.3   0.0    1.7  2  TIGR00960 3a0501s02: type II secretory pathway family protein
      0.035   10.9   0.0      0.053   10.3   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      0.046   11.2   0.0      0.088   10.3   0.0    1.4  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
       0.05   10.0   0.0        1.4    5.2   0.1    2.1  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   0.0   6.4e-70   1.4e-67       2     178 ..       1     177 [.       1     181 [. 0.98
   2 ?    5.8   0.0     0.012       2.6       4      24 ..     262     282 ..     260     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 225.1 bits;  conditional E-value: 6.4e-70
    TIGR01359   2 vfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikese.eskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrgqssGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfe 178
                  +fvlGgPGsGkGtqCakive+f+++hlsaGdllr+e+k +gs   e+i+s+i++G +vP+evtv+l+++a++  e ++ +flidGfPr++enl+ +++ +    +++++lf+dc+ +v+ +rll+rg+ssGr ddni  +kkr++ty ++t+pv+++ ek + v++++a+ +v+ vf+
  MMETSP1174-20130828|20024_1   1 IFVLGGPGSGKGTQCAKIVEKFGYIHLSAGDLLRAERK-SGSPLAEMINSYIQQGALVPAEVTVRLIKQAMETAEsSTVTFLIDGFPRSTENLDCFNRDLLPLCDLQCILFFDCPLDVLEQRLLNRGKSSGRDDDNIAVIKKRFKTYADQTIPVVDMCEKDGLVIRVNAKAPVDVVFK 177
                  6*************************************.********************************998845679************************************************************************************************96 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.012
    TIGR01359   4 vlGgPGsGkGtqCakiveefk 24 
                  + G+ G+GkGt+ + i+++f 
  MMETSP1174-20130828|20024_1 262 ISGPSGAGKGTIIDLIMKAFP 282
                  56899************9985 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.052        11       4      41 ..       2      38 ..       1      82 [. 0.90
   2 ?    1.4   0.0      0.22        47     122     147 ..     114     145 ..     102     159 .. 0.66
   3 !  192.9   0.0   3.5e-60   7.6e-58       4     177 ..     260     437 ..     258     440 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.052
    TIGR03263  4 ivisgpsGvGKstlvkklleekeelklsvSattRkpRe 41
                 +v+ gp G GK+t ++k++e+   ++ls     R++R+
  MMETSP1174-20130828|20024_1  2 FVLGGP-GSGKGTQCAKIVEKFGYIHLSAGDLLRAERK 38
                 455555.99****************9999888888886 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.22
    TIGR03263 122 sleeLeeRlkkRgt......dseeviekRlek 147
                   l+ Le+Rl +Rg+      d+ +vi+kR+++
  MMETSP1174-20130828|20024_1 114 PLDVLEQRLLNRGKssgrddDNIAVIKKRFKT 145
                  47889999988765222211566778888765 PP

  == domain 3    score: 192.9 bits;  conditional E-value: 3.5e-60
    TIGR03263   4 ivisgpsGvGKstlvkklle.ekeelklsvSattRkpRegEvdgkdYfFvskeefeekikeeeflEwaevvgnyyGtskkeveealkegkdvlleidvqGakqvkkklpeavsifilppsleeLeeRlkkRgtdseeviekRlekAkkelk...aaeefdyvivNddlekaveelksi 177
                  +visgpsG+GK+t+++ +++    ++ +svS+ttR+pR +Evdg++Y+Fv+++++e++i++++f+E+aev+gn+yGts ++ve+++++gk ++l+id+qG+kqvk++  +  ++fi ppsle Le+Rl++Rgt+s+++i+ R+++A++e++   a+ + d v vN +l+ a +++++ 
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIMKaFPGKFCFSVSHTTRAPRGKEVDGIHYHFVTRDTMEREIAAGKFIEYAEVHGNFYGTSLSAVERIWNSGKICILDIDIQGVKQVKASPLSPRFLFISPPSLEVLEQRLRGRGTESADKIAIRMKNASEEMAfgtASGNMDLVYVNSSLAAASDDMSKQ 437
                  79******************66778*****************************************************************************************************************************83224567*************9999875 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.8   0.0   6.2e-58   1.3e-55       6     185 ..       1     183 [.       1     186 [. 0.96
   2 ?    1.1   0.0      0.28        60       6      26 ..     260     280 ..     255     294 .. 0.77

  Alignments for each domain:
  == domain 1    score: 185.8 bits;  conditional E-value: 6.2e-58
    TIGR01360   6 ifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekri...aeaklvlyldvsedtlvkrllkraetsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaal 185
                  if++GGpGsGkGtqc+kivek+G+ hls+Gdllr+e +sgs+ ++ +++ +++G+lvp +v + l+k+a+  a  ++  flidG+pr  ++ + f++ +    + + +l++d+  d l +rll+r+++s+r+ddn   ikkr++ty  +t+pv+++ e  g + ++na+  vd vf+  + a+
  MMETSP1174-20130828|20024_1   1 IFVLGGPGSGKGTQCAKIVEKFGYIHLSAGDLLRAERKSGSPLAEMINSYIQQGALVPAEVTVRLIKQAMETAESSTVTFLIDGFPRSTENLDCFNRDLlplCDLQCILFFDCPLDVLEQRLLNRGKSSGRDDDNIAVIKKRFKTYADQTIPVVDMCEKDGLVIRVNAKAPVDVVFKLTCLAV 183
                  8************************************************************************************************8622257899*********************************************************************9998776 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.28
    TIGR01360   6 ifivGGpGsGkGtqcekivek 26 
                  + i G  G+GkGt  + i++ 
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIMKA 280
                  44556669*****99988765 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   4.6e-35     1e-32       4     128 ..       3     126 ..       1     131 [. 0.94
   2 !   27.1   0.0   2.8e-09   6.1e-07     158     205 ..     130     177 ..     126     184 .. 0.92
   3 !    7.9   0.1    0.0021      0.46       2      23 ..     260     281 ..     259     290 .. 0.90

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 4.6e-35
    TIGR01351   4 llGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRr 128
                  +lG PGsGKGTq+++++ek+g+ h+s+GdllRae k++++l++ +++y+++G+lvp e++++l+k+++e+ e+++  f++DGfPR++e  +++++ l     +l+ ++ ++ p +vl +r+ +R 
  MMETSP1174-20130828|20024_1   3 VLGGPGSGKGTQCAKIVEKFGYIHLSAGDLLRAERKSGSPLAEMINSYIQQGALVPAEVTVRLIKQAMETAESSTVTFLIDGFPRSTENLDCFNRDLL-PLCDLQCILFFDCPLDVLEQRLLNRG 126
                  79********************************************************************999999*****************98775.45789*******************94 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 2.8e-09
    TIGR01351 158 qReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlk 205
                   R+DD+  v+kkR+++Y +qt p++++ +k g +++++a+++++ v+k
  MMETSP1174-20130828|20024_1 130 GRDDDNIAVIKKRFKTYADQTIPVVDMCEKDGLVIRVNAKAPVDVVFK 177
                  59******************************************9987 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0021
    TIGR01351   2 lvllGpPGsGKGTqakrlaekl 23 
                  lv+ Gp G+GKGT+   +++ +
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIMKAF 281
                  799***********99998865 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.7   5.8e+02       4      18 ..       1      15 [.       1      22 [. 0.80
   2 !    6.0   0.0    0.0086       1.8     116     137 ..     110     131 ..     103     171 .. 0.67
   3 !   37.5   0.0   1.9e-12     4e-10       5     151 ..     261     413 ..     259     441 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.7
    TIGR02322  4 ilvvGpsGaGKDtll 18
                 i+v+G  G+GK t  
  MMETSP1174-20130828|20024_1  1 IFVLGGPGSGKGTQC 15
                 6899*******9865 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0086
    TIGR02322 116 aitaspdvLaqRLaaRgResae 137
                    + + dvL qRL++Rg+ s  
  MMETSP1174-20130828|20024_1 110 FFDCPLDVLEQRLLNRGKSSGR 131
                  567789**********987643 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 1.9e-12
    TIGR02322   5 lvvGpsGaGKDtlldlararladeprvlfarRv.itReadaggEdhealseeeFeeredegafalsWqahGlkYgipv.eidewleaGkvvvvngsRavlpeararyanllvvaita.spdvLaqRLaaRgResaeeieeRLarsaela...a 151
                  ++ GpsGaGK t++dl  +++ ++  + + +     R  ++ g   + ++++  e++ ++g+f    + hG  Yg  + ++++  ++Gk  ++    + +++++a   + + + i   s +vL qRL+ Rg esa++i+ R++ ++e     +
  MMETSP1174-20130828|20024_1 261 VISGPSGAGKGTIIDLIMKAFPGKFCFSVSHTTrAPRGKEVDGIHYHFVTRDTMEREIAAGKFIEYAEVHGNFYGTSLsAVERIWNSGKICILDIDIQGVKQVKASPLSPRFLFISPpSLEVLEQRLRGRGTESADKIAIRMKNASEEMafgT 413
                  678*********************5555555431235567777788899***************99**********97368888899***************999877777788875257**********************99887663432 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00023      0.05      11      57 ..       5      54 ..       1      69 [. 0.79
   2 ?    5.1   0.0     0.017       3.6     121     187 ..      96     158 ..      88     176 .. 0.73
   3 !    8.2   0.0    0.0018      0.39       8      45 ..     261     300 ..     258     320 .. 0.76
   4 ?   -1.3   0.0       1.5   3.3e+02     112     153 ..     355     394 ..     350     410 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
    TIGR00041 11 GidGaGKTtqlellkkllke...eglkvlltrEPggtklgekirelllte 57
                 G  G+GK tq++++++++        ++l  +  +g++l+e+i++++ + 
  MMETSP1174-20130828|20024_1  5 GGPGSGKGTQCAKIVEKFGYihlSAGDLLRAERKSGSPLAEMINSYIQQG 54
                 5569*************9886644446677777899*********97654 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.017
    TIGR00041 121 nekalq.lkPdlvilLdidpevalerlskrgeldreelekldflekvrekyleladkekkivvvdaen 187
                  n++ l  +  + ++++d++ +v  +rl +rg+   +   + d  + +++++   ad  ++i vvd+ +
  MMETSP1174-20130828|20024_1  96 NRDLLPlCDLQCILFFDCPLDVLEQRLLNRGK---SSGRDDDNIAVIKKRFKTYAD--QTIPVVDMCE 158
                  5555555555789*******************...666666667778888887777..5666666544 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0018
    TIGR00041   8 viEGidGaGKTtqlellkkllke..eglkvlltrEPggtk 45 
                  vi G  GaGK t+++l++k ++        + tr P+g +
  MMETSP1174-20130828|20024_1 261 VISGPSGAGKGTIIDLIMKAFPGkfCFSVSHTTRAPRGKE 300
                  899*****************99832122345566666665 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 1.5
    TIGR00041 112 ididlvlelnekalqlkPdlvilLdidpevalerlskrgeld 153
                  idi+ v++++++ l   P + ++     ev  +rl++rg+++
  MMETSP1174-20130828|20024_1 355 IDIQGVKQVKASPLS--PRFLFISPPSLEVLEQRLRGRGTES 394
                  666777777776666..9999999999999999**9999932 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.6e-06    0.0014       3      46 ..       1      44 [.       1      74 [. 0.85
   2 ?    4.3   0.2     0.037       7.9       3      24 ..     260     281 ..     259     291 .. 0.85
   3 ?   -1.1   0.0       1.7   3.7e+02      99     129 ..     290     320 ..     278     331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.6e-06
    TIGR02173  3 ivisGpPGsGkttvakilaeklslklisaGkirelaekkgldla 46
                 i + G PGsGk t   ++ ek+++ ++saG++    +k g  la
  MMETSP1174-20130828|20024_1  1 IFVLGGPGSGKGTQCAKIVEKFGYIHLSAGDLLRAERKSGSPLA 44
                 567899************************99776666666555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.037
    TIGR02173   3 ivisGpPGsGkttvakilaekl 24 
                  +visGp G+Gk t+   + + +
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIMKAF 281
                  58************98887765 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.7
    TIGR02173  99 slevraeriakrenksltealkeiiereese 129
                  s  +ra r  + ++++++ + ++++ere   
  MMETSP1174-20130828|20024_1 290 SHTTRAPRGKEVDGIHYHFVTRDTMEREIAA 320
                  5678999999999999999999999999755 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     6e-05     0.013       9      39 ..       5      35 ..       1      38 [. 0.89
   2 !    6.7   0.0    0.0053       1.1       5      21 ..     260     276 ..     256     288 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6e-05
    TIGR00017  9 GPsaaGKstvakalaeklgykyldsGalYRv 39
                 G  ++GK+t + ++ ek gy +l++G l R+
  MMETSP1174-20130828|20024_1  5 GGPGSGKGTQCAKIVEKFGYIHLSAGDLLRA 35
                 5569************************997 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0053
    TIGR00017   5 iaiDGPsaaGKstvaka 21 
                  + i GPs+aGK+t+   
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDL 276
                  5799*********9765 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.8e-05     0.017     365     390 ..     256     281 ..     228     287 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.8e-05
    TIGR02204 365 pGetvalvGPsGaGkstllelllrfy 390
                  +   + + GPsGaGk t+++l+++ +
  MMETSP1174-20130828|20024_1 256 KHPPLVISGPSGAGKGTIIDLIMKAF 281
                  34457899*************99865 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.069        15     147     167 ..       1      21 [.       1      24 [. 0.88
   2 ?    8.1   0.0    0.0012      0.26     140     170 ..     253     283 ..     234     290 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.069
    TIGR02788 147 iiisGgtgsgKTTflkalvkl 167
                  i + Gg+gsgK T    +v+ 
  MMETSP1174-20130828|20024_1   1 IFVLGGPGSGKGTQCAKIVEK 21 
                  6799*********99999876 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0012
    TIGR02788 140 aiaakkniiisGgtgsgKTTflkalvkliPk 170
                  +++++  ++isG +g+gK T++  ++k +P 
  MMETSP1174-20130828|20024_1 253 TVVKHPPLVISGPSGAGKGTIIDLIMKAFPG 283
                  56677789********************995 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   5.2e+02      32      71 ..       2      37 ..       1      77 [. 0.61
   2 ?   11.2   0.0   0.00021     0.046      18      51 ..     247     280 ..     240     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
    TIGR02673 32 fltGasGaGkttllklllgaekpsrGevevagedvarlre 71
                 f+ G  G+Gk t    +      + G ++++  d+ r ++
  MMETSP1174-20130828|20024_1  2 FVLGGPGSGKGTQCAKI----VEKFGYIHLSAGDLLRAER 37
                 88899999998854333....3344555555555555555 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00021
    TIGR02673  18 LkdvslkiekgeflfltGasGaGkttllklllga 51 
                  L+ v  ++ k   l ++G+sGaGk t++ l+++a
  MMETSP1174-20130828|20024_1 247 LQAVVKTVVKHPPLVISGPSGAGKGTIIDLIMKA 280
                  6666667777777889***************986 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012       2.5     344     366 ..       4      26 ..       1      35 [. 0.86
   2 ?    4.8   0.0    0.0055       1.2     325     362 ..     244     281 ..     227     299 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.012
    TIGR01448 344 tGGPGtGKtTvtkaiielaeele 366
                   GGPG GK T    i+e +  ++
  MMETSP1174-20130828|20024_1   4 LGGPGSGKGTQCAKIVEKFGYIH 26 
                  59**************9987776 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0055
    TIGR01448 325 seeqkealktaiqdkvviltGGPGtGKtTvtkaiiela 362
                   ee + ++kt++++  ++++G  G GK T++  i++ +
  MMETSP1174-20130828|20024_1 244 VEELQAVVKTVVKHPPLVISGPSGAGKGTIIDLIMKAF 281
                  455567899999999*****************999866 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015     0.031      29      62 ..     259     293 ..     240     306 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
    TIGR00618  29 lfvicGktGaGKtsLldAItyALYgk.vpresevv 62 
                    vi G+ GaGK +++d I  A  gk +   s   
  MMETSP1174-20130828|20024_1 259 PLVISGPSGAGKGTIIDLIMKAFPGKfCFSVSHTT 293
                  579*****************999999776666655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016     0.035     338     386 ..     229     282 ..     180     294 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00016
    TIGR02868 338 rdlsvsypgaee..vlkgvsldle...pGervavvGasGaGKstLlallaglld 386
                  r++ v++p++ +  v++++++ ++   +   + + G+sGaGK t++ l++++++
  MMETSP1174-20130828|20024_1 229 RRILVERPDDVKsfVVEELQAVVKtvvKHPPLVISGPSGAGKGTIIDLIMKAFP 282
                  555555555544455555444444000444578*****************9987 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0002     0.042      98     133 ..     245     280 ..     240     286 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0002
    TIGR00602  98 ewlkaqvLeskkkriLLitGPsGCgKsTvikiLsKe 133
                  e l+a v  + k+  L i+GPsG gK T+i  + K 
  MMETSP1174-20130828|20024_1 245 EELQAVVKTVVKHPPLVISGPSGAGKGTIIDLIMKA 280
                  567788888889999***************998875 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.2   6.8e+02      32      49 ..       1      18 [.       1      39 [. 0.76
   2 ?   10.3   0.0   0.00042      0.09      32      52 ..     260     280 ..     240     307 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.2
    TIGR00960 32 vflvGhsGaGkstllkli 49
                 +f+ G  G+Gk t    i
  MMETSP1174-20130828|20024_1  1 IFVLGGPGSGKGTQCAKI 18
                 6999999****9966544 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00042
    TIGR00960  32 vflvGhsGaGkstllklilgi 52 
                    + G+sGaGk t++ li+++
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIMKA 280
                  5689**************975 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025     0.053     344     371 ..     253     280 ..     222     296 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00025
    TIGR02857 344 tvepgelvalvGaSGaGKstllklllgf 371
                  tv     +++ G+SGaGK t+++l++  
  MMETSP1174-20130828|20024_1 253 TVVKHPPLVISGPSGAGKGTIIDLIMKA 280
                  4444556799**************9865 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00041     0.088      31      49 ..     260     278 ..     241     316 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00041
    TIGR03411  31 rviiGpnGaGkttllDvit 49 
                   vi Gp GaGk t++D+i+
  MMETSP1174-20130828|20024_1 260 LVISGPSGAGKGTIIDLIM 278
                  4789*************96 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0063       1.4     167     185 ..       2      20 ..       1      34 [. 0.89
   2 ?    2.6   0.0     0.039       8.5     153     186 ..     248     280 ..     207     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0063
    TIGR01447 167 litGGPGTGKTttvarlll 185
                  ++ GGPG GK t  a+++ 
  MMETSP1174-20130828|20024_1   2 FVLGGPGSGKGTQCAKIVE 20 
                  799************9975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.039
    TIGR01447 153 qkvavalalksnfslitGGPGTGKTttvarllla 186
                  q ++v++++k+  ++i+G  G GK t++  +++a
  MMETSP1174-20130828|20024_1 248 Q-AVVKTVVKHPPLVISGPSGAGKGTIIDLIMKA 280
                  3.689999******************99988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.52
# Mc/sec: 1129.52
//
Query:       MMETSP1174-20130828|20028_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-38  127.9   1.3    1.3e-32  110.6   0.0    3.0  2  TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
    4.8e-07   26.5   1.8    2.2e-05   21.0   0.0    2.1  2  TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
     0.0015   14.8   0.0     0.0021   14.4   0.0    1.1  1  TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02505  RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.6   8.3e-06     0.011     369     407 ..      15      55 ..       2      70 .. 0.71
   2 !  110.6   0.0   9.9e-36   1.3e-32     483     721 ..      67     320 ..      48     321 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.3e-06
    TIGR02505 369 eevkgtNPCgEIllankepCNLaevnllaieedk..evdle 407
                      g NPC E +l+ +e C L e +++ i  ++  e d  
  MMETSP1174-20130828|20028_1  15 ASELGGNPCLEQTLESYELCCLVECFPNTILLQEreEEDAR 55 
                  345699*********************99865550034433 PP

  == domain 2    score: 110.6 bits;  conditional E-value: 9.9e-36
    TIGR02505 483 flkrlkkivvkaaedyskelelrepvkkttvkPsGTisklaGvseGiHpplgkylirrIrfsksDplasalkaaGYtvvedqydkeeqsvlveiPvketlVeipaeavgadnpdieeveintlsalaqlalyallQttwadnavSaTielde.devesveealrqardnseG.yfsaklka...................rldaeeasfpqlPkEpidketyEklsaevvnrrvrsealdssdik.....eledalaeeCangaC 721
                     + +++ ++++ + + +  +r +vk t +kPsGT+s++aG+s+G+H p ++y++rrIr   +D l+  l++aGY +++d  d+   +++         V +p +a     + ++    ++ls+ +q+ + a++Q +wadn vS+T+++d+  e++ +  al +     +G +f+ + k+                   +l a e+ +pq+P+E+i +  y +ls +++  + + +a ++ + +     +     ++ C+++ C
  MMETSP1174-20130828|20028_1  67 LYAKGYAELKETDDELAARWAVRPSVKLTSIKPSGTVSLVAGASPGLHWPESRYYLRRIRMASNDSLIGPLREAGYPMEPDVTDQH--TMV---------VTVPVAAANDASESLNVRTLDDLSMWEQMLMAAFMQRHWADNQVSCTVTFDPaTEGPHIAAALAHFQYMLKGiSFLPRPKSvvvyieggsvddkeeeeerQLAAIEQPYPQMPYERISRREYHRLSSNLSALQFHMKAHNEGAREggataDQSAPPDAFCDSDRC 320
                  5566788999***************************************************************************9..555.........5555555555556666666679*****************************94599*****99988878889899887766111111111111111111133455678*********************977666644333322200000222233566888888 PP

>> TIGR02504  NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   2.2    0.0087        12     279     295 ..      20      36 ..      10      39 .. 0.89
   2 !   21.0   0.0   1.6e-08   2.2e-05     436     593 ..      78     228 ..      45     236 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0087
    TIGR02504 279 tNPCgEqpllpyesCnL 295
                   NPC Eq+l+ ye C L
  MMETSP1174-20130828|20028_1  20 GNPCLEQTLESYELCCL 36 
                  5**************88 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.6e-08
    TIGR02504 436 kleekaekygiRN.aalttiAPTGtiSllagtssGiEPvFalvykrkvavggeellevneeveealrekglyekeeelvkevaeegmsveglpevpeelkkvfvtasdvspedHvrmqaavqk.wvdsaiSKTiNlpsdatvedveavYllawklglKGi 593
                  + +e a++ ++R  ++lt+i P Gt+Sl+ag+s G+    +  y r++       +  n+++   lre+g+   e ++  ++    ++v  +    ++     +t  d+s+++ ++m a +q+ w d+++S T+ +        ++a+ l+ ++ +lKGi
  MMETSP1174-20130828|20028_1  78 TDDELAARWAVRPsVKLTSIKPSGTVSLVAGASPGLHWPESRYYLRRIR------MASNDSLIGPLREAGYPM-EPDVTDQHTM-VVTVPVAAANDASESLNVRTLDDLSMWEQMLMAAFMQRhWADNQVSCTVTFDPATEGPHIAAA-LAHFQYMLKGI 228
                  344466667777515799*****************98777778888543......456777777777777766.3233333322.22233333223333334678899**************889*********98655544555544.45677777777 PP

>> TIGR02506  NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-06    0.0021     470     586 ..      94     207 ..      83     225 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-06
    TIGR02506 470 llAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeldqealiklaaarqk.fvdqsiSlnlflee 586
                  l+ + P+ ++S+++g++++++ + s+ + +++        N  L+  l+e g   +  v d+ ++v  +  ++a   +     +t  +l++ + + +aa +q  + d  +S ++ ++ 
  MMETSP1174-20130828|20028_1  94 LTSIKPSGTVSLVAGASPGLHWPESRYYLRRIRMA----SNDSLIGPLREAGYPMEPDVTDQHTMVVTVPVAAANDASESLNVRTLDDLSMWEQMLMAAFMQRhWADNQVSCTVTFDP 207
                  899*****************************999....8**********9988777777777666666566666777777799*****************97257888888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 1416.68
//
Query:       MMETSP1174-20130828|20030_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|20031_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1200.68
//
Query:       MMETSP1174-20130828|20029_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       414  (0.100926); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1167.06
//
Query:       MMETSP1174-20130828|20035_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|20032_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1174-20130828|20042_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|20043_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 209.36
//
Query:       MMETSP1174-20130828|20040_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.39
# Mc/sec: 1742.93
//
Query:       MMETSP1174-20130828|20046_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 399.85
//
Query:       MMETSP1174-20130828|20049_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 352.99
//
Query:       MMETSP1174-20130828|20051_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 411.05
//
Query:       MMETSP1174-20130828|20052_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|20047_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.2   0.4       0.06   10.6   0.2    1.2  1  TIGR03192 benz_CoA_bzdQ: benzoyl-CoA reductase, bzd-type, Q subunit


Domain annotation for each model (and alignments):
>> TIGR03192  benz_CoA_bzdQ: benzoyl-CoA reductase, bzd-type, Q subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   1.5e-05      0.06      14      59 ..     182     228 ..     177     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.5e-05
    TIGR03192  14 rwqentvfdetkdwkd.akiitcgidvgsvssqavlvcdgelygyns 59 
                  + + n +fd   dw d + i+ cg   gs s ++  ++dg  y   s
  MMETSP1174-20130828|20047_1 182 KVDRNEMFDRMCDWDDdSYIMCCGTKSGSDSDDTDGIVDGHAYTILS 228
                  567899********862678899*****************9997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|20054_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 848.50
//
Query:       MMETSP1174-20130828|20058_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-08   31.0   3.4    2.6e-08   31.0   2.4    1.0  1  TIGR00836 amt: ammonium transporter
     0.0017   15.0   0.7     0.0019   14.9   0.5    1.0  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   2.4   1.3e-11   2.6e-08     220     271 ..       6      57 .]       1      57 [] 0.91

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.3e-11
    TIGR00836 220 aanglaalaavnTtlaaaagaltallieylkegkptvlgaingilaglvait 271
                   + ++a+ +a +Ttl+aa +++t +++  +k++ +++  ++ng+l+glv+it
  MMETSP1174-20130828|20058_1   6 GYAHVAMKTATTTTLSAASAGITNCMLFKYKTKVWDLGETCNGVLSGLVGIT 57 
                  45669999*****************99999*********************8 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   9.1e-07    0.0019     242     285 ..      15      57 .]       3      57 .] 0.73

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.1e-07
    TIGR03644 242 ifvntnaaaaaGaiaalllakllfgkadltmvlnGalaGlvait 285
                      t ++aa+  i+  +l k+  +  dl  + nG l+Glv it
  MMETSP1174-20130828|20058_1  15 AT-TTTLSAASAGITNCMLFKYKTKVWDLGETCNGVLSGLVGIT 57 
                  22.344555555567777889999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|20060_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1416.21
//
Query:       MMETSP1174-20130828|20059_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-161  535.8   0.0   5.8e-161  535.5   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
     9e-110  366.1   0.0   1.1e-109  365.8   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
     0.0018   15.2   6.4     0.0034   14.4   0.2    3.1  4  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
  ------ inclusion threshold ------
      0.025   11.2   0.1       0.04   10.6   0.0    1.2  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.5   0.0  5.7e-164  5.8e-161      66     690 ..       2     637 ..       1     649 [. 0.92

  Alignments for each domain:
  == domain 1    score: 535.5 bits;  conditional E-value: 5.7e-164
    TIGR01967  66 lPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelG.....rGsrGlightqPrrlaarsvaervaeelgtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaavdelveeekGdiliflpGereirdaaealrkrklr......hveilPlyarlsaeeqqrvfqphs.........grrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsr.PeftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneep....adydaihkallsGllsqiGakdekkeysGarnrk.flifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlikkn 690
                  lPv +  +++   + +nq v++ GetGsGkttq+P+  +  G      G++ +++ tqPrr+aa s+a+rvaee++  lG++vGy +rfed  s++t++k++tdG+ll e   d +lery++i++deaher+l  d l+G+lk +l +r dlk+++ sat+d ++f ++f ++P++ v Gr +Pvev y P  e++       +  a+ ++v+  + ee+Gd+l+fl+Ge ei d   +lr ++          e+ Ply+ l ++ q+ +f+p           gr++v++tn+aetslt+ gi yv+d+G ++   y  r +v  l + pisqasa qr+Gr Gr  +G c rly e+ f++   e t Peilr +++ v+l++++l++ d+ +f f+++P ++++   l+ll+ l+al++d    +ltp+G ++a+lPvdP+ arml  +  + c +e++ i++ l +     rP+e ++aad+a   f+ ++ d l+l++ ++  +++ ++      +k++ ++++n   +     + +ql++++  l+l + ++       y +i k+l+sG++ q+  ++  ++y  +++++  +i+P+s ++ ++P wv+  e+v tsk + r+v+ ++ +W+ e+a+h    n
  MMETSP1174-20130828|20059_1   2 LPVYQFLNELLSRVEKNQGVVVEGETGSGKTTQIPQFLVSAGyatvrNGKQRMVACTQPRRVAAMSIAKRVAEEMDVTLGQQVGYTIRFEDITSPQTVLKFMTDGMLLREAMTDPLLERYQAIVLDEAHERTLATDVLMGLLKAVLLQRKDLKLVVMSATLDAQKFQTYFSDSPLLRVPGRCHPVEVFYTPEAERD------YVEAAVRTTVQIHLCEEPGDVLVFLTGEEEIEDVCRKLRTEQESfgpevgPLEVYPLYSSLPPAKQSEIFNPAPspvtpggppGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISQASAQQRSGRAGRTRPGKCFRLYTEKSFEQElQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDG---ELTPLGEKMAELPVDPQHARMLTSSPEYRCSNEMVSIVALLNVPQIFMRPKEAQKAADEAKSTFAHIDGDQLTLLNAYHAYKQNGDD------KKWCYDNFINSRSMASADSVRKQLERIMTRLQLPLVSTDfssrEYYPNIRKCLVSGMFMQVAHRERTNHYLTVKDNQvVSIHPSSVIGDQKPPWVLFEEFVLTSKNFVRTVTAVDVKWLVEIAPHYYELN 637
                  89999999*****************************999884444358999******************************************************************************************************************************************943322......244678889999999***********************998754222222689*****************98632333444449****************************************************************************9873689*******************************************************9...9***************************************************************************99988776555......69*******************************998765444355889**********************9999776268*********************************************86655 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.8   0.0  1.1e-112  1.1e-109       1     448 [.       2     467 ..       2     511 .. 0.91

  Alignments for each domain:
  == domain 1    score: 365.8 bits;  conditional E-value: 1.1e-112
    TIGR01970   1 lPieavlPklrdalaakpqvvLeappGaGkstalPLalLdapwli.....grkiilLePrrlaaravaerlaselgeevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda..sev...elcPLyGeleleaqdraikpaaa.....G..rrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaer.laaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeerdle 448
                  lP+ + l +l++ ++ ++ vv+e  +G+Gk+t++P  l+ a++ +     +r +    Prr+aa ++a+r+a+e++ + G++vGy +r+e  +s++t l  +t+G+l r   +DP Le+ +++++De her l++D+ + l + v    r DLk+++msatLd +++++ + ++p+++  Gr +Pve+ y+p +e++ +e +v+++v+  l ee+g+vLvfL G+ ei+ v ++L  + ++  +ev   e+ PLy  l+ ++q+++ +pa++     G   rkvv++tniaetslti+G+  v+D g+ ++  ++p+  +  L +  isqasa+qr+GraGr+ pG c+rL++e+  e+ l++++ peil++ +++++l l + G +   ++ f+d P   +l++a eLL+ lgald +g+lt  G+++aeL+v+P+ a +l s+ +    ++ +++ alL+ +++ 
  MMETSP1174-20130828|20059_1   2 LPVYQFLNELLSRVEKNQGVVVEGETGSGKTTQIPQFLVSAGYATvrngkQRMVACTQPRRVAAMSIAKRVAEEMDVTLGQQVGYTIRFEDITSPQTVLKFMTDGMLLREAMTDPLLERYQAIVLDEAHERTLATDVLMGLLKAVL-LQRKDLKLVVMSATLDAQKFQTYFSDSPLLRVPGRCHPVEVFYTPEAERDYVEAAVRTTVQIHLCEEPGDVLVFLTGEEEIEDVCRKLRTEQESfgPEVgplEVYPLYSSLPPAKQSEIFNPAPSpvtpgGppGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISQASAQQRSGRAGRTRPGKCFRLYTEKSFEQeLQEQTYPEILRSKMSNVVLTLKKLGIDdLVHFDFMDPPAPETLMRALELLNYLGALDDDGELTPLGEKMAELPVDPQHARMLTSSPEYRCSNEMVSIVALLNVPQIF 467
                  89**************************************998642222134456689**********************************************************************************998886.56************************************************************************************99765554347654448******************9987333322335***********************************************************************99886552788999*********************999********9**************************************************************998764 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.014        14       2      54 ..      21      81 ..      20      95 .. 0.73
   2 !   14.4   0.2   3.3e-06    0.0034     125     174 ..     121     172 ..      92     179 .. 0.68
   3 ?   -1.4   0.1      0.21   2.2e+02     280     295 ..     283     298 ..     281     306 .. 0.86
   4 ?   -2.9   0.0      0.58   5.9e+02     310     338 ..     334     360 ..     324     388 .. 0.51

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.014
    TIGR01587  2 lvieAPtGyGKteaallwalk....likkqkadkvifalPtratanamyerlke....lfg 54
                 +v+e  tG+GKt+    ++       + + k+  v  + P r+ a  +++r+ e    ++g
  MMETSP1174-20130828|20059_1 21 VVVEGETGSGKTTQIPQFLVSagyaTVRNGKQRMVACTQPRRVAAMSIAKRVAEemdvTLG 81
                 799999******9754444333346667888888889999999999999998874444455 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3.3e-06
    TIGR01587 125 nSvliiDEvh..ayeeytkalllallevlkdvdvkillmsAtlp.kllkeyle 174
                  +  +++DE+h   +++ +++ ll+++  l+++d k+++msAtl  + +++y+ 
  MMETSP1174-20130828|20059_1 121 YQAIVLDEAHerTLATDVLMGLLKAVL-LQRKDLKLVVMSATLDaQKFQTYFS 172
                  568*******44455555555666664.44789**********9878888776 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.21
    TIGR01587 280 fvivaTQviEvslDis 295
                   v+v T ++E sl i+
  MMETSP1174-20130828|20059_1 283 KVVVSTNIAETSLTID 298
                  599**********998 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 0.58
    TIGR01587 310 iQRlGRlaRygrkirenrevyvltelled 338
                   QR GR  R   + ++ + +y  + ++++
  MMETSP1174-20130828|20059_1 334 QQRSGRAGR--TRPGKCFRLYTEKSFEQE 360
                  578888777..444445555554444333 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.9e-05      0.04      96     158 ..      15      80 ..       6      96 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.9e-05
    TIGR00959  96 ekkpavillvGLqGsGKtttaaKl...akklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpv 158
                   +k++ +++ G  GsGKtt + +    a + + +++k+ +++ +  +R+aA+   k ++e+++v +
  MMETSP1174-20130828|20059_1  15 VEKNQGVVVEGETGSGKTTQIPQFlvsAGYATVRNGKQRMVACTQPRRVAAMSIAKRVAEEMDVTL 80 
                  4566788999**********99864445567888999999999999*************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.19s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 1555.59
//
Query:       MMETSP1174-20130828|20067_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|20068_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1174-20130828|20073_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 321.51
//
Query:       MMETSP1174-20130828|20071_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 420.72
//
Query:       MMETSP1174-20130828|20062_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-71  237.3   3.8    2.9e-71  237.1   2.7    1.1  1  TIGR01008 rpsC_E_A: ribosomal protein S3
    8.3e-14   49.7   1.7    1.1e-13   49.2   1.2    1.2  1  TIGR01009 rpsC_bact: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   2.7   1.4e-74   2.9e-71       2     185 ..      27     212 ..      26     231 .. 0.93

  Alignments for each domain:
  == domain 1    score: 237.1 bits;  conditional E-value: 1.4e-74
    TIGR01008   2 erkfvkeglkrlkideflkkeleeaGysgvdvrktplgtkviifaerpglviGrrGrrireltellkk..kfglenpqieveevenpeldakvqaekiaralerGlhfrrvayaavrrimeaGakGvevtisGkltseraktekfadGylvksGepaeelvdkgtaiallkkGvlGvkvkimrpdv 185
                  +rkfv++g+++++++efl++el+e+Gy+gv+vr+tp+ t++ii+a+r++ v+G++Grrirelt +++k  +f  + +++++e+v n+ l a+vqae+++ +l  Gl++rr+ y+++r ime+GakG ev++sGkl+++rak++kf+dGy++k+G+  +e+vd++++++l+++GvlGvkv+im p  
  MMETSP1174-20130828|20062_1  27 KRKFVADGVFYAELNEFLTRELAEEGYAGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKrfNFTDGAVELYAERVANKGLCAQVQAESLKYKLIGGLAVRRACYGVLRFIMESGAKGAEVIVSGKLRAQRAKAMKFQDGYMIKTGQAEQEYVDTAVRHVLMRQGVLGVKVAIMLPHD 212
                  89******************************************************************444445678899******************************************************************************************************8865 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   1.2   5.5e-17   1.1e-13      38     204 ..      39     208 ..       8     214 .. 0.90

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 5.5e-17
    TIGR01009  38 kirellkkelkkasiseveiereadkvevtihtarPglvigkkgkeieklkkelkklvgs..kevkinikevkkpeldaklvaeeiakqlekRvsfRkamkkaiqkalkagakGvkvkvsGRlaGaeiaRselykeGrvPLhtlRadiDY...alaeakttyGvigvkvWif 204
                  ++ e+l++el++++ + ve++ +  + e++i ++r + v+g+kg+ i +l++ ++k  +     v++  ++v +  l a++ ae++  +l    + R+a    ++  +++gakG  v vsG+l  a+ a++  +++G + ++t  a+ +Y   a++++    Gv+gvkv i 
  MMETSP1174-20130828|20062_1  39 ELNEFLTRELAEEGYAGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFtdGAVELYAERVANKGLCAQVQAESLKYKLIGGLAVRRACYGVLRFIMESGAKGAEVIVSGKLR-AQRAKAMKFQDGYM-IKTGQAEQEYvdtAVRHVLMRQGVLGVKVAIM 208
                  56789999999**********************************************998567899999******************************************************8.67799999****98.7899998655222677788889*******886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 821.63
//
Query:       MMETSP1174-20130828|20070_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.0   0.0      0.052   10.7   0.0    1.6  2  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.3e-05     0.052     122     175 ..      83     136 ..      72     138 .. 0.92
   2 ?   -2.7   0.0      0.17   6.8e+02      30      49 ..     217     236 ..     214     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.3e-05
    TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                  +d ++G++ +l  m+ ge + f +  + a+G  G   +i  n +++ tv+l++ 
  MMETSP1174-20130828|20070_1  83 RDTVRGFHVALPTMRLGEVADFRMAPKFAFGSNGVPPHIPGNATVQFTVRLVSC 136
                  67899*********************************************9875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.17
    TIGR03516  30 sgstieksvernkkliaaee 49 
                  ++s++++ ++r+k++++ e 
  MMETSP1174-20130828|20070_1 217 PSSMTDRRMKRDKRMLKDEP 236
                  689999999******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1287.79
//
Query:       MMETSP1174-20130828|20078_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|20083_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 416.59
//
Query:       MMETSP1174-20130828|20082_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 976.02
//
Query:       MMETSP1174-20130828|20085_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 159.06
//
Query:       MMETSP1174-20130828|20087_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|20084_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1202.57
//
Query:       MMETSP1174-20130828|20088_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20089_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|20090_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-06   23.9   0.0    6.7e-06   23.5   0.0    1.2  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
  ------ inclusion threshold ------
      0.024   12.1   0.1      0.029   11.8   0.1    1.2  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
      0.025   12.0   0.0      0.028   11.8   0.0    1.1  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.9e-09   6.7e-06     193     250 ..      51     106 ..      38     107 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.9e-09
    TIGR02427 193 avPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                   vPtlv+ G++D + P ++ r+ia++ + a+f+ ++ a+H + + + +++ ++l +f+
  MMETSP1174-20130828|20090_1  51 GVPTLVLHGENDLVVPVAHGRAIASA-ARAKFEAFD-AGHNSIVLHRQQLLRTLEAFF 106
                  59*********************987.89*******.******************998 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.1e-05     0.029     175     244 ..      36     105 ..      19     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
    TIGR01738 175 laevDlRralqkis..vPvLrlyGqkDalvPakvvealdklap.qsellvlekaahaPflshaeafaallref 244
                   +  D Rr +   s  vP+L l+G+ D +vP + ++a+   a+ + e+    +a+h   + h +++ + l +f
  MMETSP1174-20130828|20090_1  36 KHSFDSRRRVAMASegVPTLVLHGENDLVVPVAHGRAIASAARaKFEA---FDAGHNSIVLHRQQLLRTLEAF 105
                  55667777766554349******************9998776623333...3688988888888888888776 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     2e-05     0.028     231     286 ..      51     105 ..      26     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2e-05
    TIGR01250 231 kvPtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                   vPtL+  ge+d + p a  +   + a+++++ f+ ++h +++ ++++ l++l+ f
  MMETSP1174-20130828|20090_1  51 GVPTLVLHGENDLVVPVAHGRAIASAARAKFEAFD-AGHNSIVLHRQQLLRTLEAF 105
                  59****************999999*********95.67888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1174-20130828|20094_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1390.29
//
Query:       MMETSP1174-20130828|20091_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1263.32
//
Query:       MMETSP1174-20130828|20097_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 771.94
//
Query:       MMETSP1174-20130828|20096_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.53
# Mc/sec: 343.67
//
Query:       MMETSP1174-20130828|20093_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1587.87
//
Query:       MMETSP1174-20130828|20098_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1101.43
//
Query:       MMETSP1174-20130828|20100_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|20099_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1192.45
//
Query:       MMETSP1174-20130828|20102_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 467.46
//
Query:       MMETSP1174-20130828|20101_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1429.12
//
Query:       MMETSP1174-20130828|20106_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|20110_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|20111_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|20109_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 933.35
//
Query:       MMETSP1174-20130828|20108_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-21   73.8   0.0    3.1e-20   70.7   0.0    1.9  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    8.7e-18   61.9   0.0    1.7e-13   47.8   0.0    2.4  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    4.8e-14   49.7   0.0    1.4e-10   38.3   0.1    2.1  2  TIGR02734 crtI_fam: phytoene desaturase
    6.5e-08   29.6   1.0    6.7e-06   23.0   0.4    2.1  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    1.3e-07   28.6   0.1    3.2e-07   27.3   0.0    1.5  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.5e-07   27.9   0.4    0.00022   18.3   0.9    2.2  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    6.2e-07   26.3   0.0    8.1e-07   25.9   0.0    1.3  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.2e-06   25.8   0.5      2e-06   25.1   0.4    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    5.3e-06   23.4   0.1      1e-05   22.4   0.0    1.4  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    5.5e-06   24.1   1.0    0.00022   18.9   1.5    2.1  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.2e-05   22.0   1.5      2e-05   21.3   0.4    1.6  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    2.9e-05   21.2   0.0     0.0012   15.9   0.0    2.3  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
    3.4e-05   20.8   0.1    5.1e-05   20.2   0.1    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    3.6e-05   20.2   0.0    5.5e-05   19.6   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    4.1e-05   20.5   0.1    0.00019   18.3   0.0    1.9  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    4.9e-05   18.8   0.0    0.00031   16.1   0.0    1.8  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    6.5e-05   19.7   0.0     0.0041   13.8   0.0    2.1  2  TIGR02730 carot_isom: carotene isomerase
    0.00011   18.9   0.1    0.00017   18.3   0.1    1.2  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    0.00016   18.2   0.1    0.00025   17.5   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0003   17.6   0.3       0.04   10.6   0.2    2.1  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0004   16.1   0.5    0.00062   15.4   0.3    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00064   16.3   1.2    0.00097   15.8   0.8    1.2  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0034   13.8   0.0     0.0059   13.0   0.0    1.3  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0047   13.9   2.1      0.007   13.3   1.4    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0076   12.9   0.1      0.015   11.8   0.1    1.4  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
  ------ inclusion threshold ------
      0.021   11.2   1.3      0.028   10.7   0.9    1.1  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
      0.021   11.6   0.2       0.03   11.1   0.1    1.2  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.048   10.2   0.8      0.069    9.7   0.5    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.067    9.8   0.6        0.1    9.2   0.4    1.2  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
      0.074    9.7   0.4       0.96    6.0   0.5    2.0  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.076    9.9   2.4       0.11    9.4   1.2    1.6  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.3e-22   3.1e-20       1     310 [.      48     346 ..      48     352 .. 0.83
   2 ?    0.9   0.0      0.35        46     396     429 ..     462     492 ..     384     493 .. 0.79

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.3e-22
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellalla..rvgaedrlqlerleltfldpegresrLrlsrlpaPlhlakgllrakglsladk..lalarlllalkrerl.raaadetvaewLkak...gqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralveaaeetlaadavvlAvpperaasllpeedlaaklaalesspIttvhlrldrevklpaplvglvgg 310
                  v+v+G+G++G+ +A  +a++G++v +lEa+  +GGR r    ++    +D g  v +  y e  + l+   +g ++ l+      ++++ +g   +L +++ + P+ l++gl + +  sl dk  + l r+l+  + +++  + +++t  +wL+++   g s ++i+r+++p+  +   +++e+ s +++  V++  ++++++     lp ++++ + ++ aa  l++  +++++g+ v+ le  + g  ++++ ++ +++ d +v+A+    a +ll +      +   es+  t v++  d ++ +  p+++l g+
  MMETSP1174-20130828|20108_1  48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDSYDGFL--LDRGFQVFIEPYPEAQRQLDykALGLKQFLP-----GALVRFQGD-LHLVADPFRRPMDLLAGLVA-PIGSLTDKvkVGLYRVLAVTWTNDEiFKRKETTTYDWLSREvlgGLSDDMIDRFFRPFYQGIYLAPLEDQSSRMFEFVFQ-MFAKGAA----SLPAQGMGAVSDQLAASLLDNPTAQLETGACVTGLEKGGSGHILTLK-DGRRVTCDDIVVATDGPTASRLLGA----SVVPCPESRQSTCVYFAIDGPPPVDTPILVLNGE 346
                  89************************************87666666..************9998877511466665555.....334444444.48999***********9975.44455555005566888777766667888999999****98555789*******************************96.5777765....58***************************************888777.9999*******************99....3444445556677888888888888888887765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.35
    TIGR03467 396 lpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                   p++f+ GD   t   ATl gA+ S ++A  avl
  MMETSP1174-20130828|20108_1 462 SPGVFVCGDHFGT---ATLNGALESAKRASTAVL 492
                  4789999999999...9************99986 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.3e-15   1.7e-13       2     167 ..      45     218 ..      44     242 .. 0.70
   2 !   11.9   0.0    0.0001     0.014     245     293 ..     264     312 ..     234     405 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 1.3e-15
    TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrkesGyllEkGprtlleskegildll..kdlGleavlvsidk...tdkrfvlknkgklvpvPskiselvkflLlslgkklragl........mleeirkkspgkd.eSveefvrrrlGdevlenliepllsGiYag 167
                  +++v+v+G+G+sG+  a  ++k   ++++ ++Ea+d vGG+i T   +G+ll++G + + e  + +   l  k lGl++ l         d + v ++       P+ +   +  ++ sl  k+++gl        + +ei+k+  +   + +   v   l d++++++  p+ +GiY  
  MMETSP1174-20130828|20108_1  45 RTQVAVIGAGVSGMVCARDIAKT--GLDVLVLEASDGVGGRIRTDSYDGFLLDRGFQVFIEPYPEAQRQLdyKALGLKQFLPGALVrfqGDLHLVADP----FRRPMDLLAGLVAPIGSLTDKVKVGLyrvlavtwTNDEIFKRKETTTyDWLSREVLGGLSDDMIDRFFRPFYQGIYLA 218
                  789*******************9..**********************************9988875555434899**999865222333455555555....34455555555566666666666664211110003455555553333234444444456699*************965 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.0001
    TIGR00562 245 vkvvkgekvtklekrganetleakdGvkvetdsvvltvpakkaaklLke 293
                   +  +g  vt lek+g+ + l +kdG +v  d +v++   ++a++lL  
  MMETSP1174-20130828|20108_1 264 AQLETGACVTGLEKGGSGHILTLKDGRRVTCDDIVVATDGPTASRLLGA 312
                  66778999**************************************965 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   1.1e-12   1.4e-10       1      57 [.      48     104 ..      48     120 .. 0.92
   2 !    9.3   0.0   0.00067     0.088     161     280 ..     189     310 ..     172     323 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.1e-12
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleedGfrfDtGPtvitmP 57 
                  + ViGaG++G+ +A  +a+ G +v vle+ d +GGR  + + dGf +D G  v++ P
  MMETSP1174-20130828|20108_1  48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDSYDGFLLDRGFQVFIEP 104
                  57************************************************9999987 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00067
    TIGR02734 161 rsldkkvarfikderLrqils..fhalfvggnPfkassiYalisaleleaGVwfprGGtsalvealaklae.dlggelrlnaeveeietegerataveledgerleadavvsnaDlvhtykkl 280
                    l ++v   ++d+ + + +   ++ ++++    + s ++  + ++  +     p  G++a+ + la     +  ++l++ a v+ +e+ g + + ++l+dg+r+++d +v+++D  ++ + l
  MMETSP1174-20130828|20108_1 189 DWLSREVLGGLSDDMIDRFFRpfYQGIYLAPLEDQSSRMFEFVFQMFAKGAASLPAQGMGAVSDQLAASLLdNPTAQLETGACVTGLEKGG-SGHILTLKDGRRVTCDDIVVATDGPTASRLL 310
                  55666777777788887777555999999999999999********999999*************9875553899*************998.558999*****************87665554 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4   5.1e-08   6.7e-06       1      38 [.      48      85 ..      48      87 .. 0.94
   2 ?    4.8   0.0     0.017       2.3     116     164 ..     259     308 ..     248     314 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 5.1e-08
    TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38
                 v++iG+G +G+++A  +a++g++Vl+lE+++ +g  ++
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIR 85
                 79******************************998876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.017
    TIGR00275 116 lkelgvevlteskvksikkeeekfevet.ekkeleakkvilatGgksypk 164
                  l++  ++++t + v+ ++k  ++  +++ +++ ++++ +++at g ++++
  MMETSP1174-20130828|20108_1 259 LDNPTAQLETGACVTGLEKGGSGHILTLkDGRRVTCDDIVVATDGPTASR 308
                  55667889999******99999999999899************9987766 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.4e-09   3.2e-07     123     171 ..      35      83 ..      27      95 .. 0.89
   2 ?   -2.5   0.0       2.7   3.5e+02     416     444 ..     463     490 ..     457     492 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.4e-09
    TIGR01316 123 eeeeekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                  +   +k++s +++vaviGaG +G+ +a ++ak+G +v v ea +  GG 
  MMETSP1174-20130828|20108_1  35 NFPGKKTESIRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGR 83 
                  5556789999********************************9998886 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.7
    TIGR01316 416 eGvfaGGdvirGeatvilalgdGkraaka 444
                  +Gvf  Gd   G+at+  al   kra+ a
  MMETSP1174-20130828|20108_1 463 PGVFVCGDHF-GTATLNGALESAKRASTA 490
                  89*****985.999999999999999876 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.9   1.6e-06   0.00022       1      35 [.      47      81 ..      47      83 .. 0.93
   2 !    6.7   0.0    0.0052      0.68     146     204 ..     250     307 ..     236     321 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.6e-06
    TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdekla 35
                 +vavIGaG++g+++a  +a+ G+ v +le+++ ++
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVG 81
                 59***************************998776 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0052
    TIGR03197 146 sPpelvkallakakielklhfnteitslerdaegWqllsengevlaasvvVlAn.gaqak 204
                   + +l+++ll+++++  +l ++  +t le+ ++g  l+ ++g+ ++ + +V+A+ g +a 
  MMETSP1174-20130828|20108_1 250 VSDQLAASLLDNPTA--QLETGACVTGLEKGGSGHILTLKDGRRVTCDDIVVATdGPTAS 307
                  5689***********..*****************************88888876255555 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.1e-09   8.1e-07       1      68 [.      47     113 ..      47     198 .. 0.93

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 6.1e-09
    TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllk 68 
                  +va+ gag++g+ +a+ +a +g   +vlea d +gg++ +    dg   + g+ +f+  yp+ ++ l+
  MMETSP1174-20130828|20108_1  47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRT-DSYDGFLLDRGFQVFIEPYPEAQRQLD 113
                  69***********************************986.568******************998764 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.4   1.5e-08     2e-06      20      59 ..      44      83 ..      38      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.5e-08
    TIGR00292 20 aesDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59
                 + + v+++GaG sG+ +a+ +ak gl v+vle +  +GG 
  MMETSP1174-20130828|20108_1 44 IRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGR 83
                 6789******************************999996 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.7e-08     1e-05     127     183 ..      29      85 ..      24      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.7e-08
    TIGR01317 127 gfeeGwvkPrppkkrtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllr 183
                  ++ eG   P   ++    +vav+G+G +G+ +a  ++++G +v v e +d vGG +r
  MMETSP1174-20130828|20108_1  29 SWAEGLNFPGKKTESIRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIR 85 
                  688888888888888899************************************876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.5   1.6e-06   0.00022       3      33 ..      48      78 ..      47      84 .. 0.92
   2 ?    1.4   0.0      0.34        45     106     149 ..     264     306 ..     251     339 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.6e-06
    TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekke 33
                 v v+GaG +G   A+++ak+Gl+Vl+le ++
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASD 78
                 679*************************876 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.34
    TIGR02032 106 aelllettvlsveiedekvkvevredekkevtakivigAdGaks 149
                  a+l ++++v+  e  + ++++ + +d ++  + +iv++ dG+  
  MMETSP1174-20130828|20108_1 264 AQLETGACVTGLEKGG-SGHILTLKDGRRVTCDDIVVATDGPTA 306
                  6778888999866554.5555555543444555799999**853 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.4   1.5e-07     2e-05       2      53 ..      46      97 ..      45     101 .. 0.94
   2 ?   -2.0   0.0       1.7   2.3e+02      63      94 ..     248     278 ..     229     295 .. 0.56

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.5e-07
    TIGR02733  2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkrrgfifdvG 53
                 ++v viGaG++G+ +a  +ak Gl+v +lea   vGG   t    gf++d G
  MMETSP1174-20130828|20108_1 46 TQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDSYDGFLLDRG 97
                 68************************************99999999999977 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.7
    TIGR02733  63 GGiherifkeldlelPeakildPaCavalpde 94 
                  G + +++ ++l l+ P+a++   aC+  l+++
  MMETSP1174-20130828|20108_1 248 GAVSDQLAASL-LDNPTAQLETGACVTGLEKG 278
                  44444444444.45555555555555555433 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.8e-06    0.0012       2      38 ..      48      84 ..      47     105 .. 0.85
   2 ?    2.8   0.0     0.084        11     307     349 ..     171     213 ..     140     221 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.8e-06
    TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaapklpfnn 38
                 ++viG+G +g++ A  +ak gl+v ++ea++ +++  
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRI 84
                 79***************************99888765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.084
    TIGR01790 307 taawkslwreerrrqryfrllglelllaleeeelrrvfqrFfg 349
                  + +w++    +r+ +  +  l +e+l  l+ + + r+f+ F++
  MMETSP1174-20130828|20108_1 171 AVTWTNDEIFKRKETTTYDWLSREVLGGLSDDMIDRFFRPFYQ 213
                  5567777777899999*************************95 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   3.9e-07   5.1e-05       5      47 ..      49      91 ..      46     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.9e-07
    TIGR00031  5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdek 47
                  ++GaG+sG+v+a  +ak +  vlv+e  + +GG   ++  ++
  MMETSP1174-20130828|20108_1 49 AVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDSYDG 91
                 699*******************************987766555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.1e-07   5.5e-05     377     420 ..      43      86 ..      33     103 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.1e-07
    TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                  + r +v v+G+G +G+  a+  a+ G +v++le  + +GG++++
  MMETSP1174-20130828|20108_1  43 SIRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRT 86 
                  45689*************************************97 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06   0.00019       1      63 [.      47     108 ..      47     123 .. 0.89
   2 ?   -0.6   0.0      0.76     1e+02     164     204 ..     198     238 ..     182     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.4e-06
    TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanl 63 
                  +va++gag++g+ +a +++  g +v + e+   +gg++ +    dg  ++ g+ vf+  y + 
  MMETSP1174-20130828|20108_1  47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRT-DSYDGFLLDRGFQVFIEPYPEA 108
                  69***********************************975.567999*********9998765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.76
    TIGR02732 164 ggseaslkrmwdpiayalgfidcenisarcmltifalfaak 204
                  g s + ++r++ p    + +   e+ s+r +  +f++fa  
  MMETSP1174-20130828|20108_1 198 GLSDDMIDRFFRPFYQGIYLAPLEDQSSRMFEFVFQMFAKG 238
                  44677899999999999999999***************953 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.4e-06   0.00031     533     577 ..      41      85 ..      22      87 .. 0.88
   2 ?    0.3   0.0      0.14        19     806     839 ..     463     495 ..     447     500 .] 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.4e-06
    TIGR03315 533 lksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  ++s + +vaviGaG +G+  +  +a+ Gl+v v+e ++ +gG ++
  MMETSP1174-20130828|20108_1  41 TESIRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIR 85 
                  4566789********************************999875 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.14
    TIGR03315 806 tnvfviGdakkGPativeaiadgrkaakailsre 839
                  ++vfv Gd   G at+  a+ ++++a++a+l + 
  MMETSP1174-20130828|20108_1 463 PGVFVCGDH-FGTATLNGALESAKRASTAVLCQA 495
                  58******5.7******************99765 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.1e-05    0.0041       3      53 ..      48      98 ..      46     117 .. 0.85
   2 ?    3.7   0.0     0.037       4.8     213     302 ..     232     320 ..     224     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-05
    TIGR02730  3 aivigsgigglvtatqlaakgakvlvlekylipggsagyferegykfdvga 53
                 + vig+g+ g+v+a ++a  g+ vlvle     gg       +g+ +d g 
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDSYDGFLLDRGF 98
                 679*************************98777777777777777777765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.037
    TIGR02730 213 lsdrhygginypkggvgeiaeklvkgl.ekaggkirykarvtkiilendkavgvkladgekirakrivsnatrwdtfgkllkeenlpkkek 302
                  +     g    p  g+g ++++l++ l ++  +++   a vt +  + ++   + l dg+++ +  iv  at   t ++ll ++ +p  e 
  MMETSP1174-20130828|20108_1 232 FQMFAKGAASLPAQGMGAVSDQLAASLlDNPTAQLETGACVTGL-EKGGSGHILTLKDGRRVTCDDIVV-ATDGPTASRLLGASVVPCPES 320
                  55556688899************988527788999999999986.4555666689*********99995.899999999999999998776 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.3e-06   0.00017       1      45 [.      44      86 ..      44     103 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.3e-06
    TIGR02360  1 mktqvaiigaGpsGlllgqllhkaGidavilerksrdyvlgrira 45
                 ++tqva+igaG sG++ ++ + k+G+d+++le   +d v grir+
  MMETSP1174-20130828|20108_1 44 IRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEA--SDGVGGRIRT 86
                 59*****************************96..5789999997 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.9e-06   0.00025     141     180 ..      45      84 ..      29      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.9e-06
    TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180
                    +vaviGaG +G+ ca  +a++G +v v +  + +GG +
  MMETSP1174-20130828|20108_1  45 RTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRI 84 
                  579**********************************965 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2    0.0003      0.04       2      33 ..      48      78 ..      47      90 .. 0.89
   2 ?    4.9   0.0     0.016       2.1     109     163 ..     250     304 ..     234     326 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0003
    TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                 ++++G+G+ G+++A  +a+ + l+v+++ea++
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTG-LDVLVLEASD 78
                 89****************666.******9875 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.016
    TIGR01988 109 lqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleak.LlvgADGa 163
                  ++++L ++l +++ + +l + a v+ le+  + + ltl+dg++++++ ++v+ DG 
  MMETSP1174-20130828|20108_1 250 VSDQLAASLLDNP-TAQLETGACVTGLEKGGSGHILTLKDGRRVTCDdIVVATDGP 304
                  5667777777777.589999999**********************95489999993 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   4.7e-06   0.00062     168     211 ..      45      88 ..      38      92 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.7e-06
    TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllsea 211
                   + v v+GaG +G+  Ar  a++G+ v++++ +  +GG++++++
  MMETSP1174-20130828|20108_1  45 RTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTDS 88 
                  57899**********************************98765 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   7.3e-06   0.00097       3      37 ..      47      82 ..      45      84 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.3e-06
    TIGR01350  3 dvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37
                 +v viG+G +G v+A   a++gl v+++e  + +GG
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEAsDGVGG 82
                 799**************************9667887 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.5e-05    0.0059     367     414 ..      40      87 ..      11      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.5e-05
    TIGR03996 367 eraatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvria 414
                  +  ++ ++v v+G G +G+  ar +a  G  v + eas  +GG +r+ 
  MMETSP1174-20130828|20108_1  40 KTESIRTQVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGGRIRTD 87 
                  4557788999************************************86 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.4   5.3e-05     0.007       2      35 ..      47      80 ..      46      85 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.3e-05
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierssra 35
                 +v+v+GaG+ G+  A   a+ Gl V v+e s+ +
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGV 80
                 79***************************88755 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00012     0.015       3      32 ..      48      77 ..      46      83 .. 0.92
   2 ?   -3.6   0.0       5.9   7.8e+02     177     213 ..     283     319 ..     263     332 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
    TIGR01377  3 vivvGaGvmGsaaayqLakrgkkvLLleqf 32
                 v v+GaGv G+++a  +ak g  vL+le  
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEAS 77
                 78*************************975 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 5.9
    TIGR01377 177 lvtvktkkksyqakklvvtaGaWtskLlkklaielPl 213
                  ++t+k  ++    + +v t G+  s+Ll    +  P 
  MMETSP1174-20130828|20108_1 283 ILTLKDGRRVTCDDIVVATDGPTASRLLGASVVPCPE 319
                  4444444333333445557899999999877666663 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   0.00021     0.028       1      36 [.      47      82 ..      47      95 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00021
    TIGR03377  1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasG 36
                 +v viG G  G   +RD+a  gl+v++le +d + G
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEASDGVGG 82
                 699**************************9985544 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00023      0.03       2      31 ..      47      76 ..      46      92 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00023
    TIGR02023  2 dvlviGggpsGaaaaetLakagieviller 31
                 +v+viG+g+sG   a  +ak+g +v++le 
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTGLDVLVLEA 76
                 79*************************996 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00052     0.069       1      37 [.      47      82 ..      47      87 .. 0.95

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00052
    TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37
                 +v v+G+G+ G+  a +  k+g  +v+vle  + +GG
  MMETSP1174-20130828|20108_1 47 QVAVIGAGVSGMVCARDIAKTG-LDVLVLEASDGVGG 82
                 689*******************.9********99999 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00077       0.1       2      30 ..      48      76 ..      47      82 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00077
    TIGR04018  2 viiiGaGPiGlaaaieakkaglsyliiek 30
                 v +iGaG  G+ +a ++ k+gl++l++e 
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEA 76
                 78*************************96 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.5    0.0072      0.96       2      33 ..      48      78 ..      47      84 .. 0.94
   2 ?    0.9   0.0      0.26        34     110     161 ..     253     306 ..     245     323 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0072
    TIGR01984  2 viivGgglvGlslAlaLsrksklkialieaks 33
                 v+++G+g++G++ A  +++++ l++ ++ea +
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTG-LDVLVLEASD 78
                 89*******************.*******975 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.26
    TIGR01984 110 allkrlaekkkiklyapaelkeierekdeaevkldneqkleak.LlvaAdG.an 161
                   l++ l  + + +l + a ++ +e+    ++++l+++++++++ ++va dG + 
  MMETSP1174-20130828|20108_1 253 QLAASLLDNPTAQLETGACVTGLEKGGSGHILTLKDGRRVTCDdIVVATDGpTA 306
                  556666666677777777788888888999**********99637888899544 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.2   0.00081      0.11       1      30 [.      48      77 ..      48      83 .. 0.91
   2 ?   -3.9   0.0       9.2   1.2e+03     190     214 ..     288     313 ..     270     317 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00081
    TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekd 30
                 v+viG+Gv G++ A  +ak g +v +le +
  MMETSP1174-20130828|20108_1 48 VAVIGAGVSGMVCARDIAKTGLDVLVLEAS 77
                 79************************9987 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 9.2
    TIGR02352 190 ssekvqadqvvlaa.Gawakellpla 214
                  +  +v++d +v+a+ G  a++ll+  
  MMETSP1174-20130828|20108_1 288 DGRRVTCDDIVVATdGPTASRLLGAS 313
                  44478888888875488888887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        66  (0.0160897); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.63u 0.21s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 1269.13
//
Query:       MMETSP1174-20130828|20112_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|20114_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.7   3.0      0.023   11.6   2.1    1.1  1  TIGR03814 Gln_ase: glutaminase A


Domain annotation for each model (and alignments):
>> TIGR03814  Gln_ase: glutaminase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   5.6e-06     0.023     131     179 ..      16      66 ..       2      80 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.6e-06
    TIGR03814 131 lefvrklagk..eeieldeevakseletgarnralayllksagnlendvee 179
                  le  ++la++  +++e ++++a+se+++ + ++ala+ lks+g ++++ ++
  MMETSP1174-20130828|20114_1  16 LENEKALAEHeaKHLENEKALAESEAKNLELEKALAEQLKSHGAMTEEEKK 66 
                  33334444432367899999*************************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       463  (0.112872); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 333.64
//
Query:       MMETSP1174-20130828|20116_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|20117_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|20118_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|20120_1  [L=708]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.7e-172  569.5   0.0   1.1e-171  569.1   0.0    1.1  1  TIGR01266 fum_ac_acetase: fumarylacetoacetase
    8.3e-64  212.9   0.1    1.1e-63  212.5   0.1    1.1  1  TIGR01262 maiA: maleylacetoacetate isomerase
    5.4e-05   20.6   0.0    0.00091   16.6   0.0    2.4  2  TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit


Domain annotation for each model (and alignments):
>> TIGR01266  fum_ac_acetase: fumarylacetoacetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  569.1   0.0  8.2e-175  1.1e-171       1     419 [.      20     443 ..      20     444 .. 0.95

  Alignments for each domain:
  == domain 1    score: 569.1 bits;  conditional E-value: 8.2e-175
    TIGR01266   1 sfvavaknsdfplqnlPyGvfstkadssrrigvaiGdqildlskiaaaglfeglalkehqevfkestlnaflalgrparkevrerlqkllses.aevlrdnaalrkeallaqaeatmhlPaqiGdytdfyssirhatnvGilfrgkdnallPnykhlPvgyhGrassvvvsGtelrrPvGqikad..nake.Pvfgpckkldlelelaffvg.tenelGeavpiekaeehifGvvllndwsardiqaweyvPlGPflaksfattvsPwvvsiealePfrvaq.lePeqdpkplpylredradtafdielevslkteGlaeaavisrsnakslywtlkqqlahhsvnGcnlraGdllgsGtisGkeeeafGsllelsakGkkevkla.dgetrkfledGdevilrgvckkeGvr.vGfGecaGkvlpa 419
                  s+ a + + df+lqnlP+Gvfs   ++++r++vaiGd ++dl++++aagl+ g + +    vf++s+ln+f+a +r+++++ r rl  +l+e     l  n alr  +++ ++++ mhlPa+iGdytdfyss++hatnvG +frgkdnal+Pn+ hlPvgyhGrassv vsGt++ rP Gq++ +  ++k+  v+gpc++ld+ele+affvg ++ + G +v +  ae++ifGvvl+ndwsardiq+weyvPlGPf ak+fatt+sPw+vs++alePfr ++ +  ++dp+pl y+r+  +  ++d++l v ++t G+a ++ i++sn+ +lywt+kqql hhsv+Gcn+++GdllgsGtisG+++++fGs+lels+kG++e++l+  g++rkfl+dGd+v+++gv++k G   vGfG c G vlpa
  MMETSP1174-20130828|20120_1  20 SWAAPSSEHDFSLQNLPWGVFS-APGKTPRCAVAIGDWAVDLAELQAAGLLAG-VPGLPSGVFSQSSLNTFMACPRAVWQATRSRLTAILAEGgDPALSSNEALRATVMVLLTSVIMHLPARIGDYTDFYSSREHATNVGTMFRGKDNALQPNWLHLPVGYHGRASSVFVSGTDVVRPRGQLQKHptEPKQgSVYGPCRLLDYELEMAFFVGgPPVAPGCPVSMAEAEDRIFGVVLMNDWSARDIQKWEYVPLGPFGAKNFATTISPWIVSLDALEPFRCPTsAGVQDDPEPLEYIRDP-HYGSYDVKLTVGVQTPGMASPEPITNSNFANLYWTMKQQLVHHSVTGCNMQPGDLLGSGTISGADQDSFGSMLELSWKGSREISLGtTGQVRKFLKDGDKVVMTGVARKAGFGqVGFGVCEGVVLPA 443
                  688888899*************.77899*************************.7788899******************************65145799**********************************************************************************9866445554269*****************98999****************************************************************985777889********99.899**********************************************************************************83589*********************977***********98 PP

>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   0.1     8e-67   1.1e-63       1     210 [.     474     690 ..     474     691 .. 0.93

  Alignments for each domain:
  == domain 1    score: 212.5 bits;  conditional E-value: 8e-67
    TIGR01262   1 klYsyfrSsasyRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkide....gevltqSlAiieyLeetypepa..LlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellk..ekagafcvGdevtladvcLvpqvynAerfevdlaq.yPtlkrieealaelpafqeahpenqpdt 210
                  kl++y+rSs+s+RvRiaLa kg++ye  pvnLl+  +qk ++++a+NP ++vP+L++       + ltqSlAiieyLee +   +  Llp  p++ra +r+ a++i ++i+PlqNl   + + +    ++e+ ++++++ i++Glaal +l++  e   +f+vG+++++ad cLvpq+ nA+rfevdl++ +P+l rie++++ +p fq+ahp+ qpd+
  MMETSP1174-20130828|20120_1 474 KLHGYWRSSSSWRVRIALAAKGVKYENAPVNLLQ-ADQKGAQHRARNPLAQVPVLEVTMqsgeTINLTQSLAIIEYLEESFTSASgsLLPMSPQQRAVARKYAEMINSGIQPLQNLGTFKKIGQIS-GSDEKGRAFAHDAIRDGLAALQTLVAqkEPVCKFMVGNAPSVADACLVPQLFNARRFEVDLEAvCPALLRIEANCSVHPWFQQAHPDSQPDA 690
                  5899******************************.6*****************99865433337899*************9988778************************************775.5888999******************94444689****************************8648**************************7 PP

>> TIGR02303  HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.7e-07   0.00091      81     164 ..     208     293 ..     197     296 .. 0.81
   2 ?    0.9   0.0     0.042        57     195     230 ..     356     391 ..     340     399 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.7e-07
    TIGR02303  81 kgetyrpkdvefvhyevelvvvvGkt....aknvkredaldyvaGytiandyairdylenyyrpnlrvknrdtllpiGpwivdkedve 164
                  +g++y p   + + ye e++  vG +       v   +a d + G  + nd+++rd  +  y p     +++  + i pwiv  + +e
  MMETSP1174-20130828|20120_1 208 QGSVYGP--CRLLDYELEMAFFVGGPpvapGCPVSMAEAEDRIFGVVLMNDWSARDIQKWEYVPLGPFGAKNFATTISPWIVSLDALE 293
                  5666666..57899*******9997522114579******************************8777777788899*****887665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.042
    TIGR02303 195 lieylselmtlepgdliltGtpkGladvkpGdvvrl 230
                  l+ +  +   ++pgdl+ +Gt  G  +   G +++l
  MMETSP1174-20130828|20120_1 356 LVHHSVTGCNMQPGDLLGSGTISGADQDSFGSMLEL 391
                  45555555679*************999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 1668.72
//
Query:       MMETSP1174-20130828|20123_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 362.97
//
Query:       MMETSP1174-20130828|20125_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 391.57
//
Query:       MMETSP1174-20130828|20126_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|20129_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|20128_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1145.20
//
Query:       MMETSP1174-20130828|20132_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 903.08
//
Query:       MMETSP1174-20130828|20136_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-09   34.8   0.0      2e-09   34.6   0.0    1.0  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A


Domain annotation for each model (and alignments):
>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   4.9e-13     2e-09     206     262 ..       7      73 ..       2      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 4.9e-13
    TIGR02512 206 pedvlvvsimPCtaKKdEaerpelk..........kdglrdvdavlttrElakllkeekidlakled 262
                  p +++++++mPC  KK Ea+r ++            +  ++vd+vltt E+ +++ +++ ++ + ++
  MMETSP1174-20130828|20136_1   7 PIKIFHATVMPCFDKKLEASRLDFAhprggddgsgAEPEPEVDMVLTTIEILEMISDAAAEVDQEPE 73 
                  6689*********************9*9*99877666689****************99988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.67
# Mc/sec: 155.63
//
Query:       MMETSP1174-20130828|20133_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.069    9.4   3.1       0.11    8.7   2.2    1.2  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.2   2.7e-05      0.11       6     122 ..     179     307 ..     176     332 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 2.7e-05
    TIGR03490   6 lllsilpissisllsvvsCsttssnsk.........qpekkpeakpeenkPkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnnd.......hadqkn 122
                    +s lp+s   ++ +v C t s+                   ++++++ P   +  + + ++ ns n+++s+ ++ + p+s +++ kp +++ +e+ e  +++   + + +++   +n+        + +++
  MMETSP1174-20130828|20133_1 179 SCISSLPVSASEAFQLVMCLTDSNDLDvsthtanhrTGAWSSSHRRHQEAPYANEGVE-T-EALNSPNQQSSSSDSSDSPHSDHSDTKPPAGHFNEDTE--DDHAMSTANSSEGGGSHNTtpylpepCFREDD 307
                  5688999999999999*99998877666666644333333445677888888887777.4.455667777778888889*************9887555..55555566666666666665555554344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1456.14
//
Query:       MMETSP1174-20130828|20137_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|20139_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   19.4   0.0     0.0002   19.3   0.0    1.0  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.8e-08    0.0002      81     155 ..       4      78 ..       1      79 [. 0.95

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.8e-08
    TIGR00714  81 ellklrdeleeieqakdeaaleklkkkvkkeiqsllaalvealkeqdyaaAakytskLkylrkLaseleeleekl 155
                   l+ +  + eeie+     +l+++++ + ++  s  +a+ + l   d+a A +  + L+y  k+++e+ e ee++
  MMETSP1174-20130828|20139_1   4 SLSSFVSIREEIENCSSIEGLRNIEHDNLERLTSCFEAVDDKLRRGDHAGAGNDAVWLQYYSKIHEEISEAEERV 78 
                  67899999***************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 365.17
//
Query:       MMETSP1174-20130828|20131_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 1984.72
//
Query:       MMETSP1174-20130828|20143_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1174-20130828|20144_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.0   0.0      0.017   11.0   0.0    1.0  1  TIGR01180 aman2_put: putative alpha-1,2-mannosidase


Domain annotation for each model (and alignments):
>> TIGR01180  aman2_put: putative alpha-1,2-mannosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-06     0.017     408     444 ..       2      38 ..       1      48 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.1e-06
    TIGR01180 408 dtmeGnhsiavladayakGlraedtatayealkkaal 444
                  d m G  +  v+ada  kG++++d   a+ a++k   
  MMETSP1174-20130828|20144_1   2 DSMVGTFADVVVADAIVKGVTGFDVDLAWSAIRKDSF 38 
                  78***************************99998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.44
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|20147_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 546.16
//
Query:       MMETSP1174-20130828|20148_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 281.09
//
Query:       MMETSP1174-20130828|20151_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 466.79
//
Query:       MMETSP1174-20130828|20149_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.54
# Mc/sec: 716.16
//
Query:       MMETSP1174-20130828|20154_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 229.76
//
Query:       MMETSP1174-20130828|20155_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 191.60
//
Query:       MMETSP1174-20130828|20156_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.71
# Mc/sec: 161.73
//
Query:       MMETSP1174-20130828|20157_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-16   56.7   0.0    5.3e-16   56.5   0.0    1.0  1  TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase
    0.00066   16.9   0.0    0.00069   16.9   0.0    1.2  1  TIGR00874 talAB: transaldolase
     0.0055   14.2   0.0     0.0064   14.0   0.0    1.1  1  TIGR02134 transald_staph: transaldolase


Domain annotation for each model (and alignments):
>> TIGR00875  fsa_talC_mipB: fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   3.9e-19   5.3e-16     124     207 ..       1      84 [.       1      89 [. 0.96

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3.9e-19
    TIGR00875 124 kyvsPfvgrlddiggeGlklieevkkifeiyeldtevivasvrhPrhvleaaliGadiitlpldvaeqllntplvdialekflk 207
                  +yv+P++gr+ d g++G+    e+++i+   + dt+v+vas+r   +  + a +G+d+ t+ +++a  ll+ p++ +a   f++
  MMETSP1174-20130828|20157_1   1 EYVAPYLGRMTDGGKDGMTECAEMQEIMRAVGADTRVLVASIRDASQLPQLASKGCDTFTFAPAMATLLLEDPMTAVAAADFER 84 
                  5****************************************************************************9999987 PP

>> TIGR00874  talAB: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     5e-07   0.00069     200     255 ..      17      74 ..       3      95 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5e-07
    TIGR00874 200 Gvasvkkiynyykkfgyetevmgasfrnieeilela..Gvdlltispklldelkesee 255
                  G++  +++ +  +  g +t v+ as r+  ++ +la  G+d++t +p++   l e+  
  MMETSP1174-20130828|20157_1  17 GMTECAEMQEIMRAVGADTRVLVASIRDASQLPQLAskGCDTFTFAPAMATLLLEDPM 74 
                  55556667777788999***************9998779********99887776654 PP

>> TIGR02134  transald_staph: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.6e-06    0.0064     140     200 ..       2      63 ..       1      73 [. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.6e-06
    TIGR02134 140 ivsvfaGriadtGvdplplmkealkivrqk.egvellwasprelfniiqadeiGvdiitvaa 200
                  +v+ + Gr++d G+d +    e  +i+r      ++l as r+   + q    G+d  t a 
  MMETSP1174-20130828|20157_1   2 YVAPYLGRMTDGGKDGMTECAEMQEIMRAVgADTRVLVASIRDASQLPQLASKGCDTFTFAP 63 
                  788899***********9999999999875156899********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20158_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1174-20130828|20161_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|20163_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|20167_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|20168_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1039.41
//
Query:       MMETSP1174-20130828|20172_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.6   0.1      0.028   10.7   0.0    1.0  1  TIGR03248 galactar-dH20: galactarate dehydratase


Domain annotation for each model (and alignments):
>> TIGR03248  galactar-dH20: galactarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.8e-06     0.028     197     241 ..      25      69 ..       6      71 .] 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.8e-06
    TIGR03248 197 vvglGceklqperllpeelsavelkdaavlrlqdeklGfaemvea 241
                  + +lG ek++ ++++   + ++++ ++++ r qd++  ++e +e+
  MMETSP1174-20130828|20172_1  25 IDALGIEKMAINQMIVVVADKINEIESNIERYQDDETTYSEAIEE 69 
                  5689***********999999******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 246.61
//
Query:       MMETSP1174-20130828|20166_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 2142.28
//
Query:       MMETSP1174-20130828|20176_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 223.12
//
Query:       MMETSP1174-20130828|20173_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.65
# Mc/sec: 1801.14
//
Query:       MMETSP1174-20130828|20180_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|20183_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1181.13
//
Query:       MMETSP1174-20130828|20186_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-22   77.1   0.1    2.3e-22   77.0   0.0    1.0  1  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
      1e-20   71.4   0.0    1.2e-20   71.2   0.0    1.1  1  TIGR01074 rep: ATP-dependent DNA helicase Rep
    3.4e-17   59.8   0.1    3.8e-17   59.6   0.0    1.0  1  TIGR01075 uvrD: DNA helicase II
    5.6e-07   25.8   0.0    6.1e-07   25.7   0.0    1.1  1  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
    9.5e-07   24.8   0.1    1.1e-06   24.6   0.1    1.1  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
    3.5e-06   23.4   0.1    4.1e-06   23.2   0.0    1.0  1  TIGR02784 addA_alphas: double-strand break repair helicase AddA
  ------ inclusion threshold ------
      0.038   10.2   0.0      0.044   10.0   0.0    1.1  1  TIGR00376 TIGR00376: putative DNA helicase


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   3.8e-25   2.3e-22     560     639 ..       2      90 ..       1     105 [. 0.84

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 3.8e-25
    TIGR01073 560 LefpvvflvGleegvfPharsle.........dekeleeerrlayvgitraeeeLyltkaksrllfgrleanipsrfleeipdelletk 639
                  Lef+ vf++G ee ++Ph  sl+          ++ l+eerrl yv++tra+++L+lt+ + rl++g+++    srfl++ip++     
  MMETSP1174-20130828|20186_1   2 LEFDFVFVIGCEEELLPHYFSLReekstsdqsSDESLDEERRLVYVAMTRARKQLFLTHVQRRLVWGSIRGADISRFLADIPPQQATRL 90 
                  9********************985555554444568**********************************************9875443 PP

>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0     2e-23   1.2e-20     563     639 ..       2      88 ..       1     100 [. 0.85

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 2e-23
    TIGR01074 563 lefpyvflvGmeegilPhqssiee..........dnveeerrlayvGitrakkeltltlckerrqyGelvrpepsrfldelPqedlk 639
                  lef +vf++G+ee++lPh  s+ e          ++++eerrl+yv +tra+k+l+lt+ ++r  +G +  ++ srfl+++P ++ +
  MMETSP1174-20130828|20186_1   2 LEFDFVFVIGCEEELLPHYFSLREekstsdqssdESLDEERRLVYVAMTRARKQLFLTHVQRRLVWGSIRGADISRFLADIPPQQAT 88 
                  9*****************99986522222222224699********************************************88755 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   6.5e-20   3.8e-17     560     642 ..       2      93 ..       1     103 [. 0.86

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 6.5e-20
    TIGR01075 560 lefplvflvGleeGlfPsemsldek.........GrleeerrlayvgitrarkkltltyaearrlygkekyhipsrfieelPeevleevrlk 642
                  lef+ vf++G ee l+P   sl e+           l+eerrl+yv++trark+l+lt  + r ++g  +    srf++++P++    ++l+
  MMETSP1174-20130828|20186_1   2 LEFDFVFVIGCEEELLPHYFSLREEkstsdqssdESLDEERRLVYVAMTRARKQLFLTHVQRRLVWGSIRGADISRFLADIPPQQATRLQLT 93 
                  9*****************9999875222222222469*********************************************9987777665 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     1e-09   6.1e-07     774     811 ..      23      59 ..      13      76 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1e-09
    TIGR00609 774 lakleeqakklaederlaedlrllYVAlTRAkkqlvig 811
                  l + +  + ++  de+l e+ rl+YVA+TRA+kql++ 
  MMETSP1174-20130828|20186_1  23 LREEKS-TSDQSSDESLDEERRLVYVAMTRARKQLFLT 59 
                  444444.599**************************97 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   1.9e-09   1.1e-06     847     877 ..      29      59 ..      12      65 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.9e-09
    TIGR02785 847 ikeklkkellsEemRvlYVAlTRAkekLiLv 877
                  +  + + e+l Ee R++YVA+TRA+++L+L 
  MMETSP1174-20130828|20186_1  29 TSDQSSDESLDEERRLVYVAMTRARKQLFLT 59 
                  45667889*********************95 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.9e-09   4.1e-06     838     871 ..      29      62 ..      14      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.9e-09
    TIGR02784 838 areelkekaeeEyrRLLYVamTRAedrLivcgar 871
                    ++  ++  +E rRL YVamTRA+++L+++  +
  MMETSP1174-20130828|20186_1  29 TSDQSSDESLDEERRLVYVAMTRARKQLFLTHVQ 62 
                  4566778889*******************98665 PP

>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   7.5e-05     0.044     588     608 ..      38      59 ..      29      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.5e-05
    TIGR00376 588 LkdlRRl.nvaltRarRklivi 608
                  L+++RRl  va+tRar++l + 
  MMETSP1174-20130828|20186_1  38 LDEERRLvYVAMTRARKQLFLT 59 
                  899999846*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 437.21
//
Query:       MMETSP1174-20130828|20190_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|20185_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|20191_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|20181_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-92  308.7  35.1      2e-42  143.1   1.2    4.1  4  TIGR00834 ae: anion exchange protein
  ------ inclusion threshold ------
        3.7    3.5   8.6        5.2    3.1   5.9    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   1.2   9.6e-46     2e-42     340     510 ..      57     227 ..      49     237 .. 0.97
   2 !   92.5   0.3   1.9e-30   3.8e-27     562     740 ..     238     411 ..     229     416 .. 0.89
   3 ?   -8.8   8.6         2   4.1e+03     119     183 ..     424     490 ..     412     500 .. 0.47
   4 !   96.8   0.4   9.1e-32   1.9e-28     742     879 ..     764     902 ..     722     904 .] 0.95

  Alignments for each domain:
  == domain 1    score: 143.1 bits;  conditional E-value: 9.6e-46
    TIGR00834 340 rtgrlfGGlirDikrryphylsDltDalnlqvlaavifiyfaalspaitfGGLLgektenlmgvselllstavqgvlfallaaqPllvvgfsGPlLvfeealfkfcksneleylvgrvWiglWlvllvlllvavegsfLvryisrftqeifsfLislifiyetfsklikif 510
                  r+ r++ Gl+ D++rr p y sD tD ln+++l+av+ +yfa+l+p i fGGL +  t++ +gv+e l+s  ++g+l+++la+qP++ ++ +G  L f  alf+f+    l +l    W+glW+  ++++l    +  L++  + ft+++f  L++  fiye+ s l+k f
  MMETSP1174-20130828|20181_1  57 RAKRPWNGLVDDLRRRLPVYGSDWTDGLNIKTLSAVLLLYFALLAPTISFGGLTSLLTNGELGVVEFLVSHGISGILYSILAGQPMTFIAPTGLTLAFMSALFRFSGLMALPFLPLYSWVGLWTSGFLVILALGGACNLIKQCTTFTDDVFNALLATNFIYEAGSSLLKGF 227
                  788999***********************************************************************************************************************99999999999***************************99998865 PP

  == domain 2    score: 92.5 bits;  conditional E-value: 1.9e-30
    TIGR00834 562 LlslvLmlGtfllalflrkfknsrylpgkvrrligDfgvpisilimvlvDi..likdvytqkLsvPsglkvtspeargWfipPlgekkpfpvWmmlaaalPalLvliLiflesqittlivskkerklkkGsGfhLDLllvvalgglaallglPwlsaatvrsvthinaLtveskasaPGek 740
                  +l+l L + t +++l l  ++ s+yl  ++r  ++Dfg +i i+   l+ +   +++   + L+vPs  + ++      ++ P+ +    p W+  aaalPa+L ++L +l++ i   +v+ + +klkkG  +  DLl ++ ++gl ++ glPw+  atv+s++hi a+    ++s+PG++
  MMETSP1174-20130828|20181_1 238 FLALNLAIFTCISSLKLSGMRASKYLTKNIREAVSDFGPIIIIIGTSLLSMlpAVQNLGIDFLQVPSVRQLANGR--D-LLVPIMSV---PLWTRWAAALPAVLLTLLFYLDHLISIRVVNAPRHKLKKGEAYNQDLLALGLIVGLQSVCGLPWMCGATVQSLNHIRAMAFY-DGSSPGNR 411
                  678889999999**************************9998887777776226999**********98888765..5.55567666...9*****************************************************************************9875.56778876 PP

  == domain 3    score: -8.8 bits;  conditional E-value: 2
    TIGR00834 119 arslssigkslsseaseiekpee..gaplleseketeskllsvakdissreksklkllkklPedaea 183
                  ++s+s+  +++ +++s+++++++  ++ + ++e++t++k++s ++ +++ +++++++l+  P++a++
  MMETSP1174-20130828|20181_1 424 VTSQSKEASKKDNSQSQSKEAAKkdNSQSKKNEPATSQKMKSSEDTTQTSQTTENETLETRPKNAQS 490
                  3333333333333223322222211334444444455555544444444455557777777777654 PP

  == domain 4    score: 96.8 bits;  conditional E-value: 9.1e-32
    TIGR00834 742 kiqevkeqrvtGllvavlvGlsillepiLkriPlavLfGifLymGvtsLsGiqlfdrllLllmPlkyqPdviyvkrvktrrihlftllqilclalLWvvkst.aaslalPfvliltvplrklllpklfsekelklLDke 879
                   i+ v e r++Gl++ +++  s+ l p+Lk iP++v+ GifLy+G   ++G  ++ r++ l+  +   P ++ v+    + +  +t +q++cla+LW +ks  +++l +P v+ l+v +r+  lpklf+e el +LDk+
  MMETSP1174-20130828|20181_1 764 PIRSVVETRLSGLVLHSMILGSVCLLPLLKNIPMPVISGIFLYLGRKVMTGNSFLRRIQGLFLDMEKLPPTASVRLLGRYPVIKYTGIQMGCLAILWGLKSFkPTALFFPSVIGLLVVIRRFALPKLFNEDELAILDKD 902
                  4889***************99********************************************************************************879*********************************97 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.9    0.0025       5.2     214     361 ..     422     640 ..     392     749 .. 0.47

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0025
    TIGR00934 214 ksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata...kirdkiseanslaaesdeesses................................................................................rriqekikrrlstssiekns..................qqnltrlaktksfdd...skavrlersktidraeasdleeldrakdf 361
                   + ts++++ s  + d+s++++  ++++ ++ ++++++++ + +++++s+   q  + +++   ++r k       +a+s+++s  s                                                                                                                      +    r+a  k+ +      a  +++   i+    sd++e++ra + 
  MMETSP1174-20130828|20181_1 422 AAVTSQSKEAS--KKDNSQSQS--KEAAKKDNSQSKKNEPATSQKMKSSEDTTQTSQTTENetlETRPK-------NAQSQSSS--SgggqsyssssgggvegpggssnggqsergdqssergqsdsldavgggggggaeiaavdgdrkasvnvtseanscqggepfC------------------DvvelameglgeqeaeavaK--AARKASAKVTEAatiAAADMMKEIAKIKGEGYSDIDEVSRALNL 640
                  22222222222..333333333..345556666666777777777777777666444333322222222.......22222211..0111222222356666666666667766666666666667777777777777666444444444444444444444444441..................04444444444443333221..22222222222211112222233333333333444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.18s 00:00:01.00 Elapsed: 00:00:00.77
# Mc/sec: 1549.59
//
Query:       MMETSP1174-20130828|20189_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|20194_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|20195_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|20193_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 807.65
//
Query:       MMETSP1174-20130828|20200_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.4   0.4      0.024   12.5   0.1    1.7  2  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.9e-06     0.024     110     148 ..      13      51 ..       2      72 .. 0.81
   2 ?   -3.2   0.0      0.39   1.6e+03     103     117 ..     242     256 ..     226     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.9e-06
    TIGR01416 110 lvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlag 148
                  lv+++   H +C P++  +++  g+ffCp     y ++ 
  MMETSP1174-20130828|20200_1  13 LVTVNSNAHQCCCPATYTSKTYAGSFFCPQNWVDYMSSD 51 
                  7999999*******888888889******8777776665 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.39
    TIGR01416 103 rsgkeewlvvigiCt 117
                   ++k+++ vv  +Ct
  MMETSP1174-20130828|20200_1 242 VRRKKNFKVVAPMCT 256
                  446777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|20202_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 888.39
//
Query:       MMETSP1174-20130828|20208_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 388.83
//
Query:       MMETSP1174-20130828|20212_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 200.62
//
Query:       MMETSP1174-20130828|20211_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.48
# Mc/sec: 365.72
//
Query:       MMETSP1174-20130828|20214_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-16   58.1   0.0    1.4e-16   58.0   0.0    1.0  1  TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
    3.8e-07   27.5   0.0    4.3e-07   27.3   0.0    1.0  1  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
    0.00055   16.9   0.0    0.00055   16.9   0.0    1.0  1  TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase


Domain annotation for each model (and alignments):
>> TIGR01880  Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     1e-19   1.4e-16     256     352 ..       5     106 ..       2     107 .] 0.83

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 1e-19
    TIGR01880 256 lkaGvqs..nviPseleagfdirlapsvdfealekrlaeevadagegvtlefkq...klgkklvtavdds.nPfWaafekavkemk.ltlkpeilaastdsryi 352
                  +++G ++  nviP+e+eagfd+r++p++ + +++++l+e++a+   g+++ f+     l  + +t +d+s  Pf+a++e++++ +   +++ ei++a+tdsr++
  MMETSP1174-20130828|20214_1   5 VDGGATYalNVIPTEAEAGFDVRISPTLATTEFKAKLDEWCAEE--GLSWRFAPwtsPLFDHHMTETDHSkSPFFALLEDTLQSTLgHQVEREIFPAGTDSRFL 106
                  667776666********************************875..66666665444455667777776637**********98876***************97 PP

>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.2e-10   4.3e-07     244     337 ..      13     106 ..       3     107 .] 0.91

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.2e-10
    TIGR01910 244 vnsvpdraelevrvriiPeenkeevkkeveslvkalsksdevlaeleveveisgpletpddselvkaleavikkvkgeeakvlvssgvtDarfl 337
                   n++p +ae+ ++vri+P     e k++++++ ++ + s ++     + ++    +     s++ + le  +++ +g +++ ++++++tD rfl
  MMETSP1174-20130828|20214_1  13 LNVIPTEAEAGFDVRISPTLATTEFKAKLDEWCAEEGLSWRFAPWTSPLFDHHMTETDHSKSPFFALLEDTLQSTLGHQVEREIFPAGTDSRFL 106
                  59***********************************999999999******976666778999****************************98 PP

>> TIGR01246  dapE_proteo: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     4e-07   0.00055     237     286 ..      10      59 ..       3     107 .] 0.69

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 4e-07
    TIGR01246 237 tgasnviPgelkvkfnlrfssevseeelkskvekildkhkldYelewkls 286
                  t a nviP+e+++ f++r s+ +++ e k k+ + + +++l ++    +s
  MMETSP1174-20130828|20214_1  10 TYALNVIPTEAEAGFDVRISPTLATTEFKAKLDEWCAEEGLSWRFAPWTS 59 
                  5578***********************************99998763333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1174-20130828|20216_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       553  (0.134812); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.56
# Mc/sec: 609.00
//
Query:       MMETSP1174-20130828|20219_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 700.56
//
Query:       MMETSP1174-20130828|20220_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|20217_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1156.13
//
Query:       MMETSP1174-20130828|20221_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 676.44
//
Query:       MMETSP1174-20130828|20223_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|20224_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|20225_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   13.1   0.2      0.043   11.9   0.1    1.6  1  TIGR00166 S6: ribosomal protein S6


Domain annotation for each model (and alignments):
>> TIGR00166  S6: ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     1e-05     0.043      11      79 ..      51     123 ..      48     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
    TIGR00166  11 rptlseeevkeeieeykklltknkaeevksedlGkreLaypikkqarayYvlmn....feseaavikelertl 79 
                  r++ +e+e++++i + k+ll+  k  +++  ++Gkr+L    k ++++   lmn     ++e+++i+  +r +
  MMETSP1174-20130828|20225_1  51 RISVEEYEQQGKIHTQKALLELVKSMKQDQGKVGKRALRSRKKTFKSGLKALMNsvmnTSAENDAIEAAKRSA 123
                  567788899**********************************999998877651111555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:01.11
# Mc/sec: 378.13
//
Query:       MMETSP1174-20130828|20233_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1252.20
//
Query:       MMETSP1174-20130828|20237_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 934.48
//
Query:       MMETSP1174-20130828|20236_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-20   70.1   0.0    6.5e-20   69.4   0.0    1.3  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
    0.00083   17.0   0.0     0.0018   15.9   0.0    1.4  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
  ------ inclusion threshold ------
      0.036   11.4   0.0      0.071   10.5   0.0    1.5  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   4.7e-23   6.5e-20     264     333 ..      24      95 ..       4     102 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 4.7e-23
    TIGR02244 264 lklqevdk.lekgkvYsgGslkqleellkvrg.kevLYvGDhiysDvlkskkkrgwrtaliieELeeEvkvl 333
                   ++++v++ l +gkv++gG + +l+++l + + ++ LYvGDh+ysD+lksk++ gwrt l+i+ELe+E+ ++
  MMETSP1174-20130828|20236_1  24 DSPDQVAGfLANGKVFQGGHAYHLHQMLGITSgDRLLYVGDHMYSDILKSKRTLGWRTCLVIPELENELAMY 95 
                  45677888799******************8777***********************************9987 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06    0.0018     206     243 ..      47      84 ..      43      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
    TIGR01460 206 aeellkarakrrkvlmvGDnlrtDvlgAke.aGldslLv 243
                  ++++l+ ++  r +l vGD +++D+l+ k+ +G+ ++Lv
  MMETSP1174-20130828|20236_1  47 LHQMLGITSGDR-LLYVGDHMYSDILKSKRtLGWRTCLV 84 
                  577888888888.9**************9748******9 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.2e-05     0.071      97     140 ..      44      89 ..      32     115 .. 0.79
   2 ?   -3.2   0.0      0.85   1.2e+03      86     103 ..     150     167 ..     144     173 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.2e-05
    TIGR01668  97 frralkemglt.seqvvvvGDrlfTDvllgnr.nGsltilveplvh 140
                  + + ++ +g+t  + ++ vGD+++ D+l ++r +G +t lv p  +
  MMETSP1174-20130828|20236_1  44 AYHLHQMLGITsGDRLLYVGDHMYSDILKSKRtLGWRTCLVIPELE 89 
                  556788889995577999************9846***999987554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.85
    TIGR01668  86 lshavKkpgkafrralke 103
                  + +++Kk+++++++a ++
  MMETSP1174-20130828|20236_1 150 MIQKRKKVQRELKNAITN 167
                  556667777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.24s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1174-20130828|20246_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   17.7   0.0    0.00059   17.2   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.024   10.2   0.0       0.03    9.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-07   0.00059      94     124 ..      13      43 ..       5      48 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.9e-07
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk 124
                  +++ +++e+++ +H++gi+hgD+  +Ni+v+
  MMETSP1174-20130828|20246_1  13 SVAADIAEALAFVHSQGIMHGDVYAHNILVD 43 
                  57789***********************995 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.5e-05      0.03      87     115 ..      17      45 ..      12      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.5e-05
    TIGR03903  87 qvLDalaaahdaGvvhRDLkPqnimvsaa 115
                   + +ala  h++G++h D+  +ni+v  +
  MMETSP1174-20130828|20246_1  17 DIAEALAFVHSQGIMHGDVYAHNILVDWS 45 
                  5678*********************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 698.77
//
Query:       MMETSP1174-20130828|20248_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|20250_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.21s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|20242_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-66  221.4   1.2      7e-57  191.0   0.6    2.2  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    9.5e-37  124.6   0.2    1.6e-36  123.8   0.1    1.3  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    7.2e-27   92.3   0.1    1.3e-26   91.4   0.0    1.4  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      1e-17   61.6   0.8      2e-17   60.6   0.0    1.8  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    2.8e-12   43.9   0.1    2.8e-12   43.9   0.1    2.3  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    3.3e-10   36.9   0.6    9.1e-10   35.4   0.0    1.9  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    1.7e-09   35.4   0.0    3.3e-09   34.5   0.0    1.4  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    3.5e-07   27.6   0.0    6.6e-07   26.7   0.0    1.4  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    0.00015   18.5   0.0     0.0004   17.1   0.0    1.6  2  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.6   1.5e-59     7e-57     456     689 ..     374     627 ..     365     635 .. 0.86
   2 !   28.3   0.0   2.2e-10   9.9e-08     703     818 ..     727     843 ..     705     853 .. 0.92

  Alignments for each domain:
  == domain 1    score: 191.0 bits;  conditional E-value: 1.5e-59
    TIGR02956 456 eAeeAnrAKSaFLAtmSHEiRTPlnGv.lGTleLLadtkLtseq...........qkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrG.svvlrvslndds.....llfeVeDtGvGiaeeeqetlFkaftqae..grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkae 689
                    e+An+A+  FL    HE+R Pln + lG  ++  dt+  ++            ++ l  +++   s+ + L+D+L y kiE G l++s ++fd ++L++ v+  ++s aq+++++L+  +d +lp+vl+gD +r++Qvl+N+v+NaiKF d G +++++v+l + +     + f+V+D GvGi +e q++lF+af+q+   + ++ +G GLGL i+k+++ + +g+++v S+ g GS+F fel ++ g  +e
  MMETSP1174-20130828|20242_1 374 LKERANEAQRCFLRYVFHEVRVPLNTIsLGLHTMKMDTQTVNHNetitattendsHDVLCCMEEACSSMSETLDDVLSYQKIEEGRLELSFNPFDARALVSHVVMSFHSVAQSRQLTLTSFVDSNLPKVLVGDAIRLKQVLNNFVSNAIKFSDDGkEIRIEVKLRQVQvdtctVGFSVTDQGVGISDEDQTKLFQAFSQVRpgDLQQGRGSGLGLCICKNIITLHGGQIGVRSQSGDGSTFFFELSMAVGTGNE 627
                  5699**********************9888777766665433330000000111123344556677888999***********************************************************************************56999999877666779999*************************99778999***************************************9987655 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 2.2e-10
    TIGR02956 703 rvLlvEDNevnamvaqglleklGhkvtlaesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeakee.lkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlak 818
                    L+v+D   n ++a+  l++ G+    a +g +  e   +k + l+l+D  +p + Gv+ +++++e+ +a  e   + +v+ + ++edv+++  ag + +l KP+   +L++ l +
  MMETSP1174-20130828|20242_1 727 MALVVDDVSSNRKLAKMTLNRFGYICDEATDGIEGFEMTLKKCYNLILMDNVMPRMTGVESARKIREVSSAGIEkPLIFGVTGNALSEDVSEFKLAGCNEVLTKPMCISHLKSLLIH 843
                  469*******************************************************************9887344569*******************************998866 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.1   3.5e-39   1.6e-36     109     332 ..     377     617 ..     367     618 .. 0.85

  Alignments for each domain:
  == domain 1    score: 123.8 bits;  conditional E-value: 3.5e-39
    TIGR02966 109 rleqmRrdFvanvsHELrtPLtvlkGyletleeep..e........eddeaaekalelmeeqskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaealseekehqielevdaav..kvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeeg.....aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsvk 332
                  r ++  r F+  v HE r PL  ++  l t++ ++           ++++ ++ +l  mee ++ m++ ++d+l+  ++E+ + e + +++d ++l++++  ++++++++++ +++  vd+++   + gd  +L+++l+N+v+NAik++++g+ei+++++ ++ +     + +sv+D+G GI+ e+ ++l+  F  v   + ++  G+GLGL I k +++ h +++ ++S+ g GstF ++
  MMETSP1174-20130828|20242_1 377 RANEAQRCFLRYVFHEVRVPLNTISLGLHTMKMDTqtVnhnetitaTTENDSHDVLCCMEEACSSMSETLDDVLSYQKIEEGRLELSFNPFDARALVSHVVMSFHSVAQSRQLTLTSFVDSNLpkVLVGDAIRLKQVLNNFVSNAIKFSDDGKEIRIEVKLRQVQvdtctVGFSVTDQGVGISDEDQTKLFQAFSQVRPGDLQQGRGSGLGLCICKNIITLHGGQIGVRSQSGDGSTFFFE 617
                  66778899***************99888888755421111111111223345667889**********************************************************999887632589*************************9998876655431123367******************************************************************876 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0     3e-29   1.3e-26     276     452 ..     428     614 ..     376     620 .. 0.85

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 3e-29
    TIGR01386 276 yrevlesnleEleRlsrmvedmLfLaradnaqlalereeldlaaelekvaelfevlaeergvslkvege....aevegdaqlfrRalsNLlsNAlrytpegstievrverra...devev..sventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrf 452
                   ++vl    e    +s   +d+L   + ++++l+l+++ +d+ a +++v+  f  +a+ r+++l+  ++     ++ gda  ++ +l+N +sNA++++ +g++i+++v+ r+   d+++v  sv+++g gi +e   +lF  F  v +   +++ g+GLGL I++ i+ +HgG++ + s      +f
  MMETSP1174-20130828|20242_1 428 SHDVLCCMEEACSSMSETLDDVLSYQKIEEGRLELSFNPFDARALVSHVVMSFHSVAQSRQLTLTSFVDsnlpKVLVGDAIRLKQVLNNFVSNAIKFSDDGKEIRIEVKLRQvqvDTCTVgfSVTDQGVGISDEDQTKLFQAFSQVRPGDLQQGRGSGLGLCICKNIITLHGGQIGVRSqSGDGSTF 614
                  5666666667777899999*******************************************999665522445789****************************999876522255554449******************************************************9943333444 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.26   1.2e+02     402     438 ..     326     363 ..     322     383 .. 0.81
   2 !   60.6   0.0   4.4e-20     2e-17     494     695 ..     391     611 ..     373     620 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.26
    TIGR03785 402 nkalekllavilavlligtlaLllfASrlSs.RIrrLr 438
                  n + ++ +a ++a+ +i ++a +l+AS lS   I+ L+
  MMETSP1174-20130828|20242_1 326 NVTSFSSVAESMALNVIDVIAKFLYASVLSQcHINSLS 363
                  666677789999999**************952566665 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 4.4e-20
    TIGR03785 494 HElrTPvAvVrsSLenLelqklekekqk............YleRAqegverlsaiLnsmseAtRlEqalqsaekedfdlsevlselvqgYqqlyeeqrfeleieeedl...vlrgspellaQllDKlvdNaieFskedgl..Ievslkekkke...alltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedg 695
                  HE+r P+  ++  L  +++ +++ ++++             l   +e+ + +s+ L+      ++E+   + + ++fd+ +++s +v +++ + ++++++l    +     vl g +  l Q+l   v+Nai Fs +++   Iev+l++ + +   +  +v+ +G  + ++++ klF+++  vR  + q+    GlGL I + i+  H+g+i ++ ++  dg
  MMETSP1174-20130828|20242_1 391 HEVRVPLNTISLGLHTMKMDTQTVNHNEtitattendshdVLCCMEEACSSMSETLDDVLSYQKIEEGRLELSFNPFDARALVSHVVMSFHSVAQSRQLTLTSFVDSNlpkVLVGDAIRLKQVLNNFVSNAIKFSDDGKEirIEVKLRQVQVDtctVGFSVTDQGVGISDEDQTKLFQAFSQVRPGDLQQGRGSGLGLCICKNIITLHGGQIGVRSQSG-DG 611
                  888888888888888888877777776655555555555555555666677777777777777888888888899*************************9876554446799999999*****************9998234455555443311134789****************************************************998876.44 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   4.2       1.3   6.1e+02       8     109 ..     148     249 ..     141     358 .. 0.62
   2 !   43.9   0.1     6e-15   2.8e-12     512     675 ..     430     615 ..     417     619 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.3
    TIGR02916   8 vaylvlslllvaawrkrlaggllllaaalsavwalasaalvllkkalkllvlvlevlrdavwla..flltllrrtltsakeklqklkllqalaallvllllvle 109
                  ++++  s+ l+ ++  r     +++++   ++ + a++ + ++   ++ +   + v+r a w++  fll++l ++l+s    +++ ++  +++ ++v++ l+ +
  MMETSP1174-20130828|20242_1 148 ASFIQSSIHLFYIHDSRRSAIWCVMTVNGVSLCTHAMMSVGAMPVFISPWGREMHVARWAEWVSlvFLLMVLMHSLDSRD--MKRNFISVTAQSVSVVTGLLAS 249
                  44666666666655555555555555544445555555555666667888888888888888652255566665555543..3334444444444444444443 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 6e-15
    TIGR02916 512 DmleTvesavermkkll......aqLrekgleeekkavdlvdllervieskr..aqkprievsv..dkd..levradrerlervlghLvqNAleATeeeGkVkirverek...e..aavieieDsGqGmseeFirerLFkPFdttK......kaGmGiGvyesreyveelGGeieveStpgkGtift 675
                  D+l  +e+a + m + l      +++ e++le + + +d  +l+ +v+ s +  aq ++  ++   d++       d  rl++vl++ v NA+   ++  ++ i+v+ ++   +  ++  +++D+G G+s+e  + +LF+ F+  +      + G G+G+  +++++  +GG+i v+S+ g G++f 
  MMETSP1174-20130828|20242_1 430 DVLCCMEEACSSMSETLddvlsyQKIEEGRLELSFNPFDARALVSHVVMSFHsvAQSRQLTLTSfvDSNlpKVLVGDAIRLKQVLNNFVSNAIKFSDDGKEIRIEVKLRQvqvDtcTVGFSVTDQGVGISDED-QTKLFQAFSQVRpgdlqqGRGSGLGLCICKNIITLHGGQIGVRSQSGDGSTFF 615
                  6666666666666554411112234555555667778899999999887644114444544443336664334567999**************9988777777777654421331134569***********9.*****9997653222221799*****************************996 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0     2e-12   9.1e-10     377     492 ..     498     618 ..     370     620 .. 0.86
   2 ?   -1.2   0.1      0.25   1.1e+02     360     412 ..     917     967 ..     891     976 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2e-12
    TIGR02938 377 vlPav.lGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddl.irveiedsGPGiPadlrlkvfePffttkass...rkhvGmGlavaqeivakhaGlidvdddyreGcrivvel 492
                   lP v +G   rl+ ++ ++v nai+     +  r e+++     d + +  +++d G Gi ++ ++k f+ f   +++    +++ G+Gl + ++i++ h+G i v ++  +G     el
  MMETSP1174-20130828|20242_1 498 NLPKVlVGDAIRLKQVLNNFVSNAIKFSDDGKEIRIEVKLRQVQVDTCtVGFSVTDQGVGISDEDQTKLFQAFSQVRPGDlqqGRGSGLGLCICKNIITLHGGQIGVRSQSGDGSTFFFEL 618
                  57765269999***************9999999999***9887666653789*************************9976335566788999**************99999998877776 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.25
    TIGR02938 360 terllaaGivvdwqPaavlPavlGsesrlrslfkalvdnaieamaqkqvkrre 412
                  +++l a    ++w  +     v   ++++  ++ a vd a + m++++ +r e
  MMETSP1174-20130828|20242_1 917 ADQLQARNACIKWWRTRLEDKVH--KTQKSKMLAAEVDQAADVMKNEGCRRVE 967
                  46888888888888776666554..45566788899***********999976 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   7.3e-12   3.3e-09       2     106 ..     729     837 ..     728     843 .. 0.90

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 7.3e-12
    TIGR01387   2 lvvedeqktaeylqqGlsesGyvvdivsnGrdGlhlaekddydliildvmlpgldGwevlkalre...saketpvllltardevadkvkGlel.Gaddylvkpfefael 106
                  lvv+d     +  +  l   Gy+ d +++G++G++++ k+ y+li++d ++p + G e  +++re   ++ e+p+++  + + +++ v  ++l G ++ l kp+ ++ l
  MMETSP1174-20130828|20242_1 729 LVVDDVSSNRKLAKMTLNRFGYICDEATDGIEGFEMTLKKCYNLILMDNVMPRMTGVESARKIREvssAGIEKPLIFGVTGNALSEDVSEFKLaGCNEVLTKPMCISHL 837
                  7899999999999999******************************************99999973325679*******************96599*******988776 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.4e-09   6.6e-07       3     112 ..     726     837 ..     724     842 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.4e-09
    TIGR02154   3 krilvvedeeairellaynlekegyevveaedaeealalikeelPdlilldWmlpgtsGielarrlrkeeet.reiPiim.ltargeeedrvrgletGaddyvvkPfspkel 112
                  k  lvv+d ++ r+l +++l++ gy + ea+d+ e   +  ++  +lil+d ++p ++G+e ar++r+ ++   e P+i  +t  +  ed  +   +G ++ ++kP  +  l
  MMETSP1174-20130828|20242_1 726 KMALVVDDVSSNRKLAKMTLNRFGYICDEATDGIEGFEMTLKKCYNLILMDNVMPRMTGVESARKIREVSSAgIEKPLIFgVTGNALSEDVSEFKLAGCNEVLTKPMCISHL 837
                  6679***************************************************************987652578888735666666666666669999999999887765 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.87   3.9e+02      87     144 ..     453     511 ..     442     515 .. 0.74
   2 !   17.1   0.0   8.7e-07    0.0004       2     107 ..     729     838 ..     728     843 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.87
    TIGR01818  87 kayqrGafeylpkPfdldeavalveralaeakeqaeaeaeegeaees.aeliGeaPamq 144
                  + +++G  e    Pfd   +v+ v  + ++ +++++ ++++ + ++    l+G+a  ++
  MMETSP1174-20130828|20242_1 453 QKIEEGRLELSFNPFDARALVSHVVMSFHSVAQSRQLTLTSFVDSNLpKVLVGDAIRLK 511
                  5567889999999*********9999999998888888877665554144678776555 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 8.7e-07
    TIGR01818   2 lvvdddrsirtvlekalaeaglevrtfdnaasvlralareqpdllitdvrmPgedgldllkkikkrrP...klpvivmsahsdldaavkayq.rGafeylpkPfdldeav 107
                  lvvdd +s r + + +l++ g+ ++   ++ + +++  ++  +l++ d +mP + g++  +ki++      + p+i   + + l   v+ ++  G  e l+kP+ +  + 
  MMETSP1174-20130828|20242_1 729 LVVDDVSSNRKLAKMTLNRFGYICDEATDGIEGFEMTLKKCYNLILMDNVMPRMTGVESARKIREVSSagiEKPLIFGVTGNALSEDVSEFKlAGCNEVLTKPMCISHLK 838
                  79*******************************************************99999888765223789***99*********999857999******9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.23s 00:00:00.96 Elapsed: 00:00:00.87
# Mc/sec: 1585.39
//
Query:       MMETSP1174-20130828|20256_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|20258_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 574.79
//
Query:       MMETSP1174-20130828|20263_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|20265_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 778.74
//
Query:       MMETSP1174-20130828|20270_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.2   0.0      0.019   12.1   0.0    1.0  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain


Domain annotation for each model (and alignments):
>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.6e-06     0.019      93     139 ..      23      68 ..       1      71 [. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.6e-06
    TIGR00310  93 gfitnleGvlerveevlktalrlqsedeekkkkaeellerlkevieG 139
                  + + + eGv + v e+l+ a++    d  +  + e++ e+lke + G
  MMETSP1174-20130828|20270_1  23 ASLDDEEGVPDAVSEELEKAVQA-ERDALEATRRENIKEKLKEPQSG 68 
                  456678****************9.7777788899*********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|20271_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-18   64.2   0.0    2.2e-18   64.0   0.0    1.0  1  TIGR01810 betA: choline dehydrogenase
    1.2e-11   42.1   0.0    1.4e-11   41.9   0.0    1.0  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.1e-21   2.2e-18     439     521 ..       6      88 ..       1      97 [. 0.92

  Alignments for each domain:
  == domain 1    score: 64.0 bits;  conditional E-value: 1.1e-21
    TIGR01810 439 reispGeevqtdeeidefvredaetalhpcgtckmGakddemsvvdpetr.vhGleglrvvdasilprittGnlnapsimigek 521
                   ei+pG+e  t  +++e+  e+  t  h c++ kmG  +   svvd +t  vhG  +l ++das++p i +Gn++++++ ++  
  MMETSP1174-20130828|20271_1   6 DEIEPGDEFSTLPQLEEWTAEKYTTNSHWCCSAKMGH-SPADSVVDEKTLrVHGTSNLYIADASVFPAIPNGNVHSTVLAVASL 88 
                  79**********************************9.7788*****9977****************************99865 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   6.8e-15   1.4e-11     413     480 ..      20      87 ..      10      94 .. 0.88

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 6.8e-15
    TIGR03970 413 easwvrarlatsqhlsGsarmgaeddpaavvDar.CrvrGvegLavvDtsilPaitsrGPhativmvae 480
                   ++w   + +t  h + sa+mg +  + +vvD++  rv+G ++L ++D+s++Pai+    h+t+  va 
  MMETSP1174-20130828|20271_1  20 LEEWTAEKYTTNSHWCCSAKMG-HSPADSVVDEKtLRVHGTSNLYIADASVFPAIPNGNVHSTVLAVAS 87 
                  5789999***************.5788999998626***************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 543.80
//
Query:       MMETSP1174-20130828|20268_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1341.38
//
Query:       MMETSP1174-20130828|20269_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-166  551.4   1.0   6.1e-166  551.1   0.7    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    8.5e-87  290.0   0.4      1e-86  289.8   0.3    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase
    1.3e-41  140.4   0.6    1.8e-41  139.9   0.4    1.1  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    9.7e-39  131.2   0.9    2.3e-37  126.7   0.6    2.0  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.8e-29  100.0   0.3    3.1e-15   53.7   0.0    2.0  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    8.7e-26   88.5   0.2      2e-12   44.5   0.1    2.0  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    7.3e-20   68.7   0.1    2.9e-13   47.0   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.6e-18   63.4   0.4      1e-12   44.9   0.2    2.0  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    5.3e-17   59.2   3.6    6.7e-16   55.6   2.5    2.4  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    1.2e-16   58.4   0.0    1.1e-08   32.1   0.0    2.1  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
      2e-09   34.3   0.1    3.8e-05   20.2   0.0    2.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    6.4e-09   32.8   0.1    2.7e-05   20.8   0.0    2.2  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
     0.0011   14.2   0.5     0.0047   12.1   0.0    1.9  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.1   0.7  1.9e-168  6.1e-166     227     586 ..       5     391 ..       1     397 [. 0.93

  Alignments for each domain:
  == domain 1    score: 551.1 bits;  conditional E-value: 1.9e-168
    TIGR02188 227 asaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevv....deegkeve....eeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkg.........lyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedee...........elekelkklvrkeigpiakpdkilvve 586
                  + ++ + e++d+e+plf+LYtsGstG PkG++h+tgGy++++ ++++ +fd+++ed+++CtaD+GW+tGhsY+ +gPL+n at +++egvpt+p+asr+we++ek+kv+ifYtaPtaiR+l  +g+++v++hdlsslrvlg+vGepinp+aweWyy+v+G ++c ivdtwWqtetG+i++tp+pg +t+lkpg+atlP+fG+++++v    d+ g++v     e+ ++g+Lv+k+pwPsm+rt++g ++rf++tYfk  +g         +yftGDga+rd+dGy+ i+GRvDdv+nvsGhrlgtae+e+a+ sh+av+e+av+gvp+++kg  i+afv l+ g e++              +ek++ ++vr++igpia+pd+i+++ 
  MMETSP1174-20130828|20269_1   5 KASDAPLEWVDAEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTGTSFRHIFDYRPEDVYFCTADIGWITGHSYLAFGPLLNNATVVMHEGVPTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGDDMVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGGGRCDIVDTWWQTETGSIMLTPIPG-TTPLKPGMATLPFFGVQPALVkveeDDLGNPVGlseiEGPGSGFLVMKEPWPSMARTVWGSHDRFTDTYFKGEDGdeddyvfagYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGFEQELMqgdefnldggnVIEKQIAEIVREKIGPIATPDTIQLAX 391
                  5667889**********************************************************************************************************************************************************************************.6*******************93333345777764222333459****************************8877888899999***********************************************************************98887654445567788887899********************9876 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.8   0.3   3.2e-89     1e-86     220     579 ..       5     387 ..       1     396 [. 0.86

  Alignments for each domain:
  == domain 1    score: 289.8 bits;  conditional E-value: 3.2e-89
    TIGR02316 220 edadvevewlesnepsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalg...kpvidnywqtetgwpvlaiarglddkpvklgspglpvygyr...ldvldeatgedvgpne.....kgllvvaaplppgclstvwgddarflktyfsafk....rll....yssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailk...eadsve....daddahalekelmalvesqlgavarparv 579
                  + +d ++ew++++ p ++lytsg+tg pkg+   +ggy v   +s+  if+ +  dv+f+++d+gw+ ghsy  ++pll  ++ v++eg+pt+p ++ ww+ivek++vs +++aptair l  +   ++  hdlssl+vl   gep++  + +w  + +g     ++d +wqtetg  +l+  +g    p k g   lp++g +   ++v ++  g++vg +e      g+lv++ p p    +tvwg   rf  tyf   +    + +    y + d + rdedgy  i gr ddv+nv+ghrlgt e+e ++ sh+av+e av+gv  + kg    af+ l+   e + ++    + d+   +ek++ ++v +++g +a p  +
  MMETSP1174-20130828|20269_1   5 KASDAPLEWVDAEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTGTSFRHIFDYRPEDVYFCTADIGWITGHSYLAFGPLLNNATVVMHEGVPTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGDDMVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGggrCDIVDTWWQTETGSIMLTPIPGTT--PLKPGMATLPFFGVQpalVKVEEDDLGNPVGLSEiegpgSGFLVMKEPWP-SMARTVWGSHDRFTDTYFKGEDgdedDYVfagyYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRvgfEQELMQgdefNLDGGNVIEKQIAEIVREKIGPIATPDTI 387
                  567899******************************************************************************************************************9999999*********************9999*****99843347***************9999975..56667777777776533377778899*****9985555569*******87.5779**************6432222244511115566999******************************************************99999999983322222221111345678899***************99876 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.4   5.6e-44   1.8e-41     254     575 ..       7     349 ..       2     388 .. 0.85

  Alignments for each domain:
  == domain 1    score: 139.9 bits;  conditional E-value: 5.6e-44
    TIGR01217 254 aelvfeqlpfdhplyilfssGttGvpkaivhsaGGtlvqhlkehvlhcdltdgdrllyyttvGwmm.wnflvsg.latGatlvlydGsplvpatnvlfdlaeregitvlGtsakyvsavrkkglkparthdlsalrlvastGsplkpegfeyvyeeika.dvllasisGGtdivscfvganp.slpvykGeiqapglGla...veaw.deeGkpvtge......kGelvvtkplpsmpvrfwndedGskyrkayf.....d....kypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigqeqedgeervvlfvklasGat 575
                  ++   e +  +hpl++l++sG+tG+pk +vhs+GG +vq    ++   d ++ d+++  + +Gw+    +l+ g l+  at+v+++G p+ p++   ++++e+ +++++ t+   +  + +kg   +  hdls+lr++ + G p++p+++e+ y+ i      +      t+  s ++   p + p+  G    p +G++   v++  d+ G+pv         +G lv+ +p psm  + w   d  ++ ++yf     d     + g +  Gd ++    G   i Gr d  ln +G rlG+ae+  a++  + v es vig  ++  ++ +  fvkl  G +
  MMETSP1174-20130828|20269_1   7 SDAPLEWVDAEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTGTSFRHIFDYRPEDVYFCTADIGWITgHSYLAFGpLLNNATVVMHEGVPTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGDDMVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGGgRCDIVDTWWQTETGSIMLTPIPgTTPLKPGMATLPFFGVQpalVKVEeDDLGNPVGLSeiegpgSGFLVMKEPWPSMARTVWGSHD--RFTDTYFkgedgDeddyVFAGYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGFE 349
                  5555678899******************************************************97468999765999*******************************************************************************9875666666666666666666655356666777777777764333444326679998532122223789***************9887..8999999444331222236788899*******************************************************************98865 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.6   7.4e-40   2.3e-37     160     488 ..      16     389 ..       3     396 .. 0.82

  Alignments for each domain:
  == domain 1    score: 126.7 bits;  conditional E-value: 7.4e-40
    TIGR02262 160 addpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlm...aerptpdavfdrlrrvkptifygvptlyaamla..dpelkaedekrlrlctsaGealpeevGkrwkarfG...vdildGvGstellhiflsnlpdd..vkyGtsGkpvpGyrlrlvd....dggedvadgev.....Gellvsg..pssaagywnnreksrat.feGe...........wtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadi..........d..ealeeelkehvkdklapykyprwiev 488
                  a++p f ly+sGstGapkG vh     +v + +  r+++++r +dv f +a + +  G     + pl   at+v++   +  pt+++ ++ ++++k +ify++pt   ++l   d+ + a+d ++lr+  + Ge++  +  + + +  G    di+d    te + i+l+  p++  +k G +  p  G +  lv+    d g++v   e+     G l+++   ps a + w+ +++  +t f+Ge           +  +Gd  +r++dG+y  +Gr dd+l vsG  +   eve+a+ +h+av e+av+g+  + + +   afv lr g +           d  +++e+++ e v++k++p   p  i++
  MMETSP1174-20130828|20269_1  16 AEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTGTSFRHIFDYRPEDVYFCTADIGWITGHSYLAFGPLLNNATVVMHegvPTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDkgDDMVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGggrCDIVDTWWQTETGSIMLTPIPGTtpLKPGMATLPFFGVQPALVKveedDLGNPVGLSEIegpgsGFLVMKEpwPSMARTVWGSHDRFTDTyFKGEdgdeddyvfagYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGFEQelmqgdefnlDggNVIEKQIAEIVREKIGPIATPDTIQL 389
                  77899************************99999**************************99999*********972225688999*************************8324556677799************99999999999985667*******************98744799*******99997776433347788888766543333567777634799********998777467753333443333355699999*************************************************************99987543111111112212367788888888888888888888876 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   9.9e-18   3.1e-15     117     275 ..      14     181 ..       1     201 [. 0.82
   2 !   44.4   0.2   6.6e-15   2.1e-12     342     409 .]     252     326 ..     248     326 .. 0.90

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 9.9e-18
    TIGR01733 117 skpddlayviyTSGStGkPKgVlvehrs.lvnllaslarryelseedrvlqfsslaFDlsv.eeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea....see.lkslrlvllgGealtaelverlrarae..evrlinlYGpTEttv 275
                   +++++ +++yTSGStG PKg + +  + +v++ +s+++ ++ ++ed++++++ + + +   +  f++ll+ at+v+ +   ++++a+ + ++++++kv+++ + p+ ++ l ++     +++ l+slr++ ++Ge +++++ e + + ++  ++ ++ ++  TEt  
  MMETSP1174-20130828|20269_1  14 VDAEHPLFLLYTSGSTGAPKGLVHSTGGyMVQTGTSFRHIFDYRPEDVYFCTADIGWITGHsYLAFGPLLNNATVVMHEGVPTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGddmvTAHdLSSLRVLGTVGEPINPDAWEWYYNVIGggRCDIVDTWWQTETGS 181
                  568999***************8776655278888888889999*************97655055699*****99999999999988889999999999*************999997777444466***************999999888888889999999999854 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 6.6e-15
    TIGR01733 342 erFvedpfaksege.......rlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  +rF++  f++++g          Y TGD +++++dG  ++ GR+Dd + ++G+R+  +E+eaa++++p+v+e++v
  MMETSP1174-20130828|20269_1 252 DRFTDTYFKGEDGDeddyvfaGYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAV 326
                  67888888777766777788889************************************************9987 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.9e-14   9.1e-12     199     379 ..      21     211 ..      14     226 .. 0.80
   2 !   44.5   0.1   6.3e-15     2e-12     416     495 ..     272     351 ..     254     384 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 2.9e-14
    TIGR03208 199 qliytsgttgepkgvmhtantllsni.layaerlelgegdvilmaspmahqtgfmyglmlplvlrasavlqdiw....naakaaeliretgvt.ftmastafltdlaravk.esgepvsslktflcagapipgalverarealg...akivsawgmtengavtvtkpddaeekasvtdglplpgvevkvid 379
                   l+ytsg+tg pkg++h++   + +  +++ + ++ +  dv + ++ +   tg+ y+++ pl+ +a+ v+ +       a++  e++ +++v+ f  a ta+ + l +  +  + + +ssl+ +   g pi +   e   +++g     iv +w  te+g++ +t    +         lp+ gv+  ++ 
  MMETSP1174-20130828|20269_1  21 FLLYTSGSTGAPKGLVHSTGGYMVQTgTSFRHIFDYRPEDVYFCTADIGWITGHSYLAFGPLLNNATVVMHEGVpthpTASRWWEIVEKHKVSiFYTAPTAIRSLLDKGDDmVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGggrCDIVDTWWQTETGSIMLTPIPGTTPLKPGMATLPFFGVQPALVK 211
                  599***************99988776267888899***********************************996422124567789****99973555666655544443331367899**********************999955558*************99987766666666666777777655555 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 6.3e-15
    TIGR03208 416 egwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlktgasld 495
                   g++ tgd a  d +gy +i+gr  dv+   g  +   e+ea +  hpav++ a+++ p +  g  + a+v l+ g   +
  MMETSP1174-20130828|20269_1 272 AGYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGFEQE 351
                  59999*********************************************************************997655 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.5e-07   4.6e-05     165     238 ..      19      94 ..       2     153 .. 0.72
   2 !   47.0   0.0   9.1e-16   2.9e-13     377     471 ..     255     348 ..     228     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.5e-07
    TIGR03098 165 laailYtsGstGrPkgvvlshr.nlvaGaksvaqyLelredDrllavLPlsfDyGlnqlt.taflvGatvvlldyl 238
                     +lYtsGstG Pkg+v s    +v+  +s  +  + r++D  +    +++  G + l    +l  atvv+++ +
  MMETSP1174-20130828|20269_1  19 PLFLLYTSGSTGAPKGLVHSTGgYMVQTGTSFRHIFDYRPEDVYFCTADIGWITGHSYLAfGPLLNNATVVMHEGV 94 
                  45689*************987625888999999999*****99999999999999998862457778888888755 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 9.1e-16
    TIGR03098 377 taerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesdke 471
                  t + f+   + +++    +   f GD   rDe+G+  + gR d+++  sG+R    eve+++ + + v e +v+gvp+++ G  i + v+ + + 
  MMETSP1174-20130828|20269_1 255 TDTYFKGEDGDEDDYVFAG-YYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGF 348
                  4555555555444444444.3699**************************************************************999866655 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06   0.00045     171     307 ..       6     148 ..       2     156 .. 0.81
   2 !   44.9   0.2   3.2e-15     1e-12     391     470 ..     257     336 ..     252     350 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.4e-06
    TIGR02275 171 aeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsv.eiceltqqtrylcalPaahnyplssPGalGvfyaGGcvvla....adpspteafpliekhkvtvtalvPpavalwldaaek..sradlsslkllqvGG 307
                  a++  le ++a++  f+  + GstG pk +  +   y+     s   i  +  + +y+c+  +       s  a+G ++   +vv+     ++p++++ ++++ekhkv++    P+a+   ld+  +  + +dlssl++l   G
  MMETSP1174-20130828|20269_1   6 ASDAPLEWVDAEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTGTSFrHIFDYRPEDVYFCTADIGWIT-GHSYLAFGPLLNNATVVMHegvpTHPTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGDDmvTAHDLSSLRVLGTVG 148
                  5567777888899999999*********8888888888877777537999*********98876544.4566799999999999996222257899999************************9986225689*****996544 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 3.2e-15
    TIGR02275 391 GyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGe 470
                   y+k e+ ++  +   G+y+tGd ++++++Gy  ++Gr+ d +n  G ++ + e+e  +  hpav+++a++ ++ +  G 
  MMETSP1174-20130828|20269_1 257 TYFKGEDGDEDDYVFAGYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGV 336
                  599999999999999*********************************************************99887765 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   2.5   2.1e-18   6.7e-16     181     496 ..       8     348 ..       3     362 .. 0.73

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.1e-18
    TIGR03205 181 akpaewpavkaddvallqytggttglpkgamlthgnl..tsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdv...aavlrd.ieekratvfpgvptmwialan..dpslekrdlsslatigsggaplpvevaklferkvg...lklksgwgmtetcspg.tghplegpdkpgsiglmlpgieldvvsl..ddpkkvlppgev.....gelrirg..pnvtrgywnraeesaeafv............gdrfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklrega 496
                   +p+ew  v a+   +l yt g+tg pkg + + g     +  s   ++    r   +  +   c   +  i   + + +  l +   + +h+       a+   + +e+++ ++f   pt   +l +  d  +   dlssl ++g+ g p+  +  + +   +g     +   w  tet s   t  p + p kpg   l + g++  +v +  dd  +++   e+     g l ++   p ++r  w   +  ++++              + ++tgd  + d+dgy+ +  r  d++   g  +    +e ai ++pav e  vig+p + +g    afvklr g 
  MMETSP1174-20130828|20269_1   8 DAPLEW--VDAEHPLFLLYTSGSTGAPKGLVHSTGGYmvQTGTSFRHIFDY--R--PE--DVYFCTADIGWITGHSYLAFGPLLNNATVVMHEGVPThptASRWWEiVEKHKVSIFYTAPTAIRSLLDkgDDMVTAHDLSSLRVLGTVGEPINPDAWEWYYNVIGggrCDIVDTWWQTETGSIMlTPIPGTTPLKPGMATLPFFGVQPALVKVeeDDLGNPVGLSEIegpgsGFLVMKEpwPSMARTVWGSHDRFTDTYFkgedgdeddyvfAGYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRVGF 348
                  467777..4566667888999999999997766654311223334444433..2..22..335788888888888888888888888888888765411133344415777899*******999987622455899****************9999988877765333578899******997538899*****************98777662255555554445433333677787622578888887665554444311111110000245789*********************************************************************985 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     8e-09   2.5e-06     111     221 ..      15     131 ..       3     216 .. 0.86
   2 !   32.1   0.0   3.6e-11   1.1e-08     317     399 ..     265     346 ..     246     357 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 8e-09
    TIGR01923 111 sldkiatlifTSgstGkpKavvqtfrnhyasa.vgsaeklgftesdnWLlsLPlyHvsGlsil.frallegatlkivdkf....aaeqllesianekvthiSlVptqLkrlleesss 221
                  + +++  l++TSgstG pK+ v++ + ++++  ++  + +   ++d +     +  + G s l f  ll+ at+++++       a+   e ++++kv+     pt +++ll++   
  MMETSP1174-20130828|20269_1  15 DAEHPLFLLYTSGSTGAPKGLVHSTGGYMVQTgTSFRHIFDYRPEDVYFCTADIGWITGHSYLaFGPLLNNATVVMHEGVpthpTASRWWEIVEKHKVSIFYTAPTAIRSLLDKGDD 131
                  5688899****************9998887761566677999*******************986899*******9887542112678999***********************9876 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 3.6e-11
    TIGR01923 317 elteaveeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses 399
                  +  + v+  G++ tgD +  d++g+  +++R dd++   G  +  +e+E++++s+p+v e +v++++ ++ G    a++k++ 
  MMETSP1174-20130828|20269_1 265 DEDDYVFA-GYYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTKGVGIYAFVKLRV 346
                  44455666.***************************999******************************99988888888765 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.5e-05     0.011     137     161 ..      12      36 ..       2      47 .. 0.83
   2 !   20.2   0.0   1.2e-07   3.8e-05     376     436 ..     274     334 ..     242     372 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.5e-05
    TIGR01734 137 kavkeddnyyiiytsGstGkPkGvq 161
                  ++v+ +   +++ytsGstG PkG  
  MMETSP1174-20130828|20269_1  12 EWVDAEHPLFLLYTSGSTGAPKGLV 36 
                  689999999**************75 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.2e-07
    TIGR01734 376 ayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkde 436
                   y tGD +t ++dg+  + Gr+D  + + G+r+   ++ea ++    + e++v+ + +k +
  MMETSP1174-20130828|20269_1 274 YYFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVIGVPHKTK 334
                  489*********************************************9999987664444 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002     0.062      99     148 ..      21      74 ..      11     100 .. 0.76
   2 !   20.8   0.0   8.7e-08   2.7e-05     286     329 ..     284     327 ..     275     355 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
    TIGR02372  99 ltfatsGstgtPkPvthswaa.Llreaealakalgerpapv...ravialvPah 148
                  + + tsGstg+Pk + hs    +++ + ++ ++   rp++v    a i+++  h
  MMETSP1174-20130828|20269_1  21 FLLYTSGSTGAPKGLVHSTGGyMVQTGTSFRHIFDYRPEDVyfcTADIGWITGH 74 
                  6678**************975256888899888888888762223445666555 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 8.7e-08
    TIGR02372 286 ddervfvieGrldeilqvgGvnvspghvkdvLeaepavealavr 329
                  d+++ ++i+Gr+d++l v+G     ++v+  ++++pav + av 
  MMETSP1174-20130828|20269_1 284 DEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESAVI 327
                  78999***********************************9994 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.068        21     420     433 ..      22      35 ..      15      42 .. 0.87
   2 !   12.1   0.0   1.5e-05    0.0047     680     730 ..     275     325 ..     261     364 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.068
    TIGR03443 420 lsftsGseGiPkGv 433
                  l +tsGs+G PkG+
  MMETSP1174-20130828|20269_1  22 LLYTSGSTGAPKGL 35 
                  679**********6 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.5e-05
    TIGR03443 680 yrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvrenv 730
                  y tGd      dG    +Gr dd + + G r+   e+++ +  hP v e  
  MMETSP1174-20130828|20269_1 275 YFTGDGATRDEDGYYKITGRVDDVLNVSGHRLGTAEVEAAINSHPAVTESA 325
                  778888888899***********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1339.69
//
Query:       MMETSP1174-20130828|20277_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|20276_1  [L=2187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.16s 00:00:01.34 Elapsed: 00:00:00.83
# Mc/sec: 3477.83
//
Query:       MMETSP1174-20130828|20287_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1142.75
//
Query:       MMETSP1174-20130828|20290_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.9   7.6        1.9    4.6   5.3    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.3   0.00046       1.9     328     378 ..     159     208 ..     112     259 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00046
    TIGR02442 328 ekkeeakpdeekedeseekekeeskkqeeeepgk..ddekeedekeeaeeeae 378
                  + +ee +++ + +d++   ++++++++eeee+g+  dd++++de+ee ee  +
  MMETSP1174-20130828|20290_1 159 DGDEESGNNDDDNDDD---DDDTEGSNEEEEGGDdnDDDDDDDEEEEWEELGN 208
                  2222222222222221...1111122221111111022222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1150.78
//
Query:       MMETSP1174-20130828|20295_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|20294_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1225.02
//
Query:       MMETSP1174-20130828|20296_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1342.52
//
Query:       MMETSP1174-20130828|20297_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   13.7  20.9     0.0019   15.5  10.5    2.4  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.14   5.6e+02      30      56 ..      36      61 ..      20      74 .. 0.44
   2 !   15.5  10.5   4.5e-07    0.0019      41     262 ..     152     390 ..     141     392 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.14
    TIGR00950 30 llllLpllrlrnslkrllrllllgalq 56
                   ++  +l++r+  ++l +l++l+a  
  MMETSP1174-20130828|20297_1 36 YTIIVRYLQTRV-PGKLSPLVILSAAL 61
                 233334444444.23333333333222 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4.5e-07
    TIGR00950  41 nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg................nlsislaGlllgllsgisfAlgtv....lakrlvkkeglellqft.gfvvlliGallllpfalllgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                  +s   ++ + l++++  g +  l ++a   + + + a+++ ++P +++l +++++ + +  + + A+   l+G  +l++                   l +  +G ++++  +i+f         ++k+lv +++l l qf   +vvl  ++   +++    g  l ++p    +wl l++L++   +++++l    +++++a  +s+l+ l  +va l + ++l+e l+l+q+ g ++i++ 
  MMETSP1174-20130828|20297_1 152 PSASVVKGVSLYSVFTCGRMT-LNIIACGMTYAYFNAMVMLVQPFLIALCERAIFGQVLPPRLWPALTGTLLGSSMLIYGAygaslsstmdpevgpsGLTHADIGGVILQFTSICFSTAGRltvrGTKKLVTRHELLLAQFGfTAVVLGFASCTDASTRSSWGALL-RMP--WDGWLSLAFLSVGVYVVGQSLNILCIRNLSATLLSSLSSLRLVVACLGSAFFLQEPLTLIQWEGSGVIIVC 390
                  566667777777777777765.456778888888889999999999999999999888889999999999999999988766676666565555555444555566666666676654332011257888888885554443112333333333333333334433.666..4579****************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1378.21
//
Query:       MMETSP1174-20130828|20299_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   29.4   0.0    1.5e-07   29.4   0.0    2.2  3  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4      0.32   1.3e+03      22      25 ..      39      42 ..      11      77 .. 0.59
   2 ?   -1.5   0.1      0.14   5.8e+02      37      58 ..     132     152 ..      99     169 .. 0.54
   3 !   29.4   0.0   3.8e-11   1.5e-07      58     125 ..     182     264 ..     176     265 .] 0.94

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.32
    TIGR00307 22 kkrk 25
                 kk k
  MMETSP1174-20130828|20299_1 39 KKSK 42
                 2333 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.14
    TIGR00307  37 igekrikkvrtrGGnkkvrllr 58 
                  ++++ + kv  r G +k ++ +
  MMETSP1174-20130828|20299_1 132 VADEEMFKV-MRSGKRKAKAWK 152
                  444444444.355666666555 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 3.8e-11
    TIGR00307  58 rietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig...............karvtsrPgqdGvvdgvll 125
                  r ++a v+++e   + +  + gv +np+ n + +  v+tk++++e++++               +a+vt+ P  dG +++vll
  MMETSP1174-20130828|20299_1 182 RFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSdlglvttsgkvvwgkYAQVTNNPELDGCINAVLL 264
                  67788889999999999999*************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 999.35
//
Query:       MMETSP1174-20130828|20303_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1147.73
//
Query:       MMETSP1174-20130828|20308_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 144.87
//
Query:       MMETSP1174-20130828|20306_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1037.80
//
Query:       MMETSP1174-20130828|20304_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2419.80
//
Query:       MMETSP1174-20130828|20310_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1174-20130828|20311_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.1  12.0      0.042   11.6   8.3    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.046   11.1   5.3      0.053   10.9   3.7    1.2  1  TIGR00331 hrcA: heat-inducible transcription repressor HrcA
       0.37    6.9   6.9      0.071    9.3   0.8    1.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.3   3.1e-05     0.042      63     185 ..      42     177 ..      10     189 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.1e-05
    TIGR03499  63 eeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae......................eelrkelkalkellekqlselal...eeedperakllkklleagvseelarelleklke.....kedaeeareklreaLekkl 185
                  +++++   e+a+ ++++++++  +++   +                 +                      ++ +++ +++ ++++ + +el++   +++d ++a+l+++l++++v+  +++++l++ ++     +e++++a++ +re+ ++ +
  MMETSP1174-20130828|20311_1  42 QRAVALSKEAAADRPANPSRDVVQEQGVIQ-----------------KlqktiqvckqlqaknieltrerDARQDDASNMMQTISILQNELRKcdpAQKDAQIAQLTEELKAKDVQTATLKDMLKESEAavkivEEKNTRAVADFREIEKNLM 177
                  222222222222222222222222222222.................02222222223333334466667566666666777666666666667779******************************99998888888888888887544444 PP

>> TIGR00331  hrcA: heat-inducible transcription repressor HrcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.7   3.9e-05     0.053     194     303 ..      67     179 ..      17     186 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.9e-05
    TIGR00331 194 ekieeelselkaeleeledelvdllleilseeneeelyvdGlsnlleqpefked...ierirellelleskkllkklleealeekgvtvkigkensekeledlsvisskykig 303
                  + ++++l+++++  ++l+ + ++l +e    +++  ++++ +s l ++ +  ++     +i++l e l+ k+    +l+  l+e++ +vki +e++++ ++d+  i ++   +
  MMETSP1174-20130828|20311_1  67 QGVIQKLQKTIQVCKQLQAKNIELTRERDARQDDASNMMQTISILQNELRKCDPaqkDAQIAQLTEELKAKDVQTATLKDMLKESEAAVKIVEEKNTRAVADFREIEKNLMDD 179
                  333444444444455555555555555544444444566555544444333333444689*****************************************998887777666 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.8   5.2e-05     0.071     360     442 ..      30     107 ..      12     130 .. 0.68
   2 ?    0.9   1.0     0.019        26      41     100 ..     128     190 ..     101     194 .. 0.52

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5.2e-05
    TIGR00954 360 ekseeellkefivnrrlllkladalgRlveakrditrLaGytaRvdellqvlddvkslnfkrprveekesaeeesrkselvag 442
                  +++ +   ++   +r + l+   a +R ++  rd+ + +G+ +++++ +qv ++++++n + +r+ +  +  +    s+++++
  MMETSP1174-20130828|20311_1  30 TSDLSTSSSD-AFQRAVALSKEAAADRPANPSRDVVQEQGVIQKLQKTIQVCKQLQAKNIELTRERDARQDDA----SNMMQT 107
                  3333333333.334556666677899**********************************9999988444433....333333 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.019
    TIGR00954  41 vdaredesskeelkkesknselekkkkkalv...dkeflgklkvllkiliprvfckellllil 100
                  +++ e+ ++k+ ++ + k+  +e +++ + v   +++ ++ ++ + k l+ +++c+e+  l l
  MMETSP1174-20130828|20311_1 128 AQLTEELKAKDVQTATLKDMLKESEAAVKIVeekNTRAVADFREIEKNLMDDQKCREVQQLCL 190
                  333333333444444444444444444333300033444555667777888888888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       546  (0.133106); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 699.19
//
Query:       MMETSP1174-20130828|20313_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-24   82.0  10.6    8.8e-21   72.2   3.9    2.3  2  TIGR00887 2A0109: phosphate:H+ symporter
    6.8e-07   26.0   8.8    6.8e-07   26.0   6.1    1.9  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    3.3e-06   24.1  11.6    0.00021   18.1   2.9    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
     0.0005   16.8   3.3     0.0005   16.8   2.3    1.8  2  TIGR00898 2A0119: cation transport protein
     0.0008   15.2  11.2     0.0035   13.1   1.3    2.8  3  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.5e-05     0.012     114     166 ..       3      58 ..       1      71 [. 0.70
   2 !   72.2   3.9   1.1e-23   8.8e-21     288     452 ..     127     290 ..     100     313 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.5e-05
    TIGR00887 114 vvatllfyrlllgvGiggdyplsaiitsefa...tkkrRGaliaavFamqgfGila 166
                   + +ll+ r++lgvGigg ypl+++  +e     +   +   ++ ++  q++G l 
  MMETSP1174-20130828|20313_1   3 AMGLLLVCRFFLGVGIGGCYPLASTKGAEECgstHAIDKNQAVGVIYFWQAVGDLF 58 
                  57889999***************987666431112223556678888888888775 PP

  == domain 2    score: 72.2 bits;  conditional E-value: 1.1e-23
    TIGR00887 288 klLlGtavsWflLDiafYgvnLnqkvilkaiGysetaeknnayeelyktavgnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek........gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslla 452
                     l tav+W+l D+ +Yg n +   + + + +   ++  + + +  + av  l+      +P  W ++ l+  +G k +ql GF  ++v  v++a+ +  l+++         l+a+y l ++  n+G     F++P ev+   +R+t  G++aaaGk Gai++  +++ ++
  MMETSP1174-20130828|20313_1 127 PNFLTTAVCWMLYDVSYYGSNQFTPRMTEKV-F---GDGVTVFTKCWHGAVDMLV-----GLPATWHSIWLLRYWGTKRVQLSGFASIAVSSVIVAVVWTPLTSDdasegsayILFAIYLLFYYAVNWGAKMGAFVLPQEVYKPEIRATFTGLAAAAGKFGAIVGIWLFEAVT 290
                  46899******************99998876.4...2444447777777775443.....589***************************************99999999877788999999999****************************************99998765 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4     0.099        81     157     211 ..       6      63 ..       2      95 .. 0.68
   2 !   26.0   6.1   8.3e-10   6.8e-07     349     498 ..     167     316 ..     110     319 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.099
    TIGR00879 157 vlivgRvllGigvGiasalvPlYisEiApkalR...galvslyqlaitfGilvaaifg 211
                  +l v R++lG g+G++  l+++  +E +   ++    + v+++ ++  +G l+ +i+g
  MMETSP1174-20130828|20313_1   6 LLLVCRFFLGVGIGGCYPLASTKGAEECGSTHAidkNQAVGVIYFWQAVGDLFPYISG 63 
                  78999*********99999998888877666542223344444455556666666666 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 8.3e-10
    TIGR00879 349 allvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtg.sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyff 498
                  + +   + ++v++ aT  +i+l +++G ++++l G+a  a+ +++++++  + + + +s+ ++++  +  llf  a ++g    ++vl +E++  ++R+  + +a+aa  +++++  +lf   +   ig   v +f +al+ ++++l  f+
  MMETSP1174-20130828|20313_1 167 KCWHGAVDMLVGLPATWHSIWLLRYWGTKRVQLSGFASIAVSSVIVAVVWTPLTSDdASEGSAYILFAIYLLFYYAVNWGAKMGAFVLPQEVYKPEIRATFTGLAAAAGKFGAIVGIWLFEAVTP-IIGLVPVMLFVAALSTVGALLSHFY 316
                  55556677899999*********************************66666666555555555555555555555556666679***********************99999999999999999.6998889999999999999988776 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.3   3.7e-05     0.031     108     154 ..       7      56 ..       2     117 .. 0.72
   2 !   18.1   2.9   2.6e-07   0.00021     254     393 ..     131     285 ..     100     289 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.7e-05
    TIGR00895 108 LlvlRflaglGlGgllpnliaLvsEyapkrf...ratvvglvavGyaiGa 154
                  Llv Rf+ g+G+Gg +p + +  +E +++ +   + ++vg+++   a+G 
  MMETSP1174-20130828|20313_1   7 LLVCRFFLGVGIGGCYPLASTKGAEECGSTHaidKNQAVGVIYFWQAVGD 56 
                  899*****************999998887654446778887777666764 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.6e-07
    TIGR00895 254 lLwllyflllvvvYlltsWlPkLlvea...gaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs...tlsspt....llllllvil....GlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpil 393
                     ++ +l  v++Y+ ++ +P ++ +    g+ +      +++  + g+ +++   +l    g k v ++++  +av +v+v+     l+s++     +++l +i      ++  ga +g  +l  e+Y ++iRat  g a + G++gai+g +l
  MMETSP1174-20130828|20313_1 131 TTAVCWMLYDVSYYGSNQFTPRMTEKVfgdGVTVFTKCWHGAVDMLVGLPATWHSIWLLRYWGTKrVQLSGFASIAVSSVIVAVvwtPLTSDDasegSAYILFAIYllfyYAVNWGAKMGAFVLPQEVYKPEIRATFTGLAAAAGKFGAIVGIWL 285
                  44566677788999999999987765411155555555566666666777788888888888888777777766666655554321134444322222333333330000334458899999999***************************987 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.11        89     182     211 ..       7      36 ..       3      57 .. 0.80
   2 !   16.8   2.3   6.1e-07    0.0005     307     491 ..     107     311 ..      91     321 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.11
    TIGR00898 182 flvlrlLvGvgiagivvvalvLitEflpkk 211
                  +lv r+  Gvgi+g ++ a +  +E  ++ 
  MMETSP1174-20130828|20313_1   7 LLVCRFFLGVGIGGCYPLASTKGAEECGST 36 
                  799************999988888776665 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 6.1e-07
    TIGR00898 307 sekkakkaslldllrtpklrkttlllmllwfttafsYygLvldleelggn..........iYldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk..........llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagll 491
                  s++++   ++ + +   +++  +l+  + w+   +sYyg    ++ +  +            ++ ++  lv lpa    ++l+++ g +  +   ++  +v+++++++v   l+          +l ++ +++ +a+  +a   a+++ +E+Y   +R++  g+++++ ++G+i+   l+  ++ +  ++p+++f +++ ++g+l
  MMETSP1174-20130828|20313_1 107 SSRRSYLEQVRAGFKEHDAIPNFLTTAVCWMLYDVSYYGSNQFTPRMTEKvfgdgvtvftKCWHGAVDMLVGLPATWHSIWLLRYWGTKRVQLSGFASIAVSSVIVAVVWTPLTsddasegsayILFAIYLLFYYAVNWGAKMGAFVLPQEVYKPEIRATFTGLAAAAGKFGAIVGIWLFEAVTPIIGLVPVMLFVAALSTVGAL 311
                  6666666777778888999999*****************9999988888866667763333333345556779*****************99999999999999999999888889999**997677777777777778888889*******************************99999999999999999998887766655 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.3   0.00028      0.23     255     287 ..       4      36 ..       2      82 .. 0.66
   2 ?    0.1   0.0     0.036        29     446     488 ..     128     170 ..      97     184 .. 0.79
   3 !   13.1   1.3   4.3e-06    0.0035     652     728 ..     233     311 ..     179     316 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00028
    TIGR01299 255 ygtfllcrllsgvgiggaipivfsyfaevlare 287
                   g++l+cr++ gvgigg+ p+  +  ae     
  MMETSP1174-20130828|20313_1   4 MGLLLVCRFFLGVGIGGCYPLASTKGAEECGST 36 
                  6999****************9887777765444 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.036
    TIGR01299 446 itlkltivwftlsfsyyglsvwfpdvikhlqaveyalltkvvq 488
                  + l   + w+    syyg + + p + +++  +  ++ tk  +
  MMETSP1174-20130828|20313_1 128 NFLTTAVCWMLYDVSYYGSNQFTPRMTEKVFGDGVTVFTKCWH 170
                  55677789******************99999999988888765 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 4.3e-06
    TIGR01299 652 ial.lclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgiliftslvsitkaipillasavlv.lgsl 728
                   a+ l +y  ++  a     vl  e+y  + rat  g+  a  k  a++gi +f ++  i   +p++l  a+l  +g+l
  MMETSP1174-20130828|20313_1 233 FAIyLLFYYAVNWGAKMGAFVLPQEVYKPEIRATFTGLAAAAGKFGAIVGIWLFEAVTPIIGLVPVMLFVAALStVGAL 311
                  3331445667777788888899*******************************************99888887614555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 1285.16
//
Query:       MMETSP1174-20130828|20318_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1174-20130828|20315_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.7   1.0      0.023   11.6   0.7    1.2  1  TIGR02482 PFKA_ATP: 6-phosphofructokinase
        0.1    8.1   9.9       0.12    7.8   6.9    1.0  1  TIGR02680 TIGR02680: TIGR02680 family protein


Domain annotation for each model (and alignments):
>> TIGR02482  PFKA_ATP: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   1.1e-05     0.023     149     252 ..      10     111 ..       4     156 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
    TIGR02482 149 vdkirDtatsheraflvevmGreagdlallaaiatgaeiiivp.eaeldieelaekvkeqaekkkkksiiivaeeellgsakevakkieektgietRvtvlghvq 252
                  ++++ D     er+f+      + + l  laa+ ++ae+++     e++ + + +++ e a  ++k+  i v + el + + e++++++e   ++ R+  ++  q
  MMETSP1174-20130828|20315_1  10 LQQVVDEHLGFERMFVKH---AHKNVLKDLAALKGQAEAALKTlSDEVSDAAMLKRIAEAAGDENKARAIAVEHRELNETVAELEEEVKELRMLKARADAVAEEQ 111
                  555566666666666544...3555666678889999988765144556667889999999999999999999999********************998887666 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.9     6e-05      0.12     857     950 ..      22     114 ..       3     132 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 6e-05
    TIGR02680 857 krfgdllhelevavrelreaaeeaaeqreraeraeseareaaedaaearaeaeeaslrlraleesvgaevdeirarlaevraaleslkrelrrl 950
                  ++f++++h+      ++++ ++eaa +    e + ++++++ ++aa  +++a ++ +++r+l+e+v+  ++e++ +l+  +a+ +++  e +r 
  MMETSP1174-20130828|20315_1  22 RMFVKHAHKNVLKDLAALKGQAEAALKTLSDEVSDAAMLKRIAEAAGDENKARAIAVEHRELNETVAELEEEVK-ELRMLKARADAVAEEQERK 114
                  5799999999999999999999999999999999********************************98766653.4444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 743.31
//
Query:       MMETSP1174-20130828|20323_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.8   0.0       0.03   12.4   0.0    1.1  1  TIGR00193 urease_gam: urease, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00193  urease_gam: urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.4e-06      0.03      32      93 ..      27      91 ..      22      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.4e-06
    TIGR00193 32 ypeavayisaai..leeardGkkvaelmeeGat.llteddvmeGvaemldevqveatfpdGtklv 93
                 + eav  i  +i  le a   ++ ae +++G     ++d++ +G a  +  +q+     dG+k++
  MMETSP1174-20130828|20323_1 27 FYEAVNGIHVKIqrLEVAESVQSFAETVDAGERqANSSDHLRDGTALQVAVLQISVQQADGIKFI 91
                 5688888877773358999999*********76156778899*********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1174-20130828|20317_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-125  415.9  17.0    1.2e-78  263.1   9.3    3.4  2  TIGR00930 2a30: K-Cl cotransporter
    1.2e-11   42.1   1.9    1.8e-11   41.5   1.3    1.2  1  TIGR00909 2A0306: amino acid transporter
    2.7e-05   20.6   0.5    4.4e-05   19.9   0.4    1.2  1  TIGR00906 2A0303: cationic amino acid transport permease
    0.00013   18.4   2.2    0.00021   17.7   1.5    1.2  1  TIGR00911 2A0308: L-type amino acid transporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1   9.3   1.2e-81   1.2e-78     227     539 ..       2     288 ..       1     299 [. 0.93
   2 !  146.2   0.0   2.4e-46   2.5e-43     551     935 ..     324     771 ..     316     772 .. 0.84

  Alignments for each domain:
  == domain 1    score: 263.1 bits;  conditional E-value: 1.2e-81
    TIGR00930 227 kaavlllvivllsilaivvGtiisakd.kkakgivslka.eifseneipgireaegg..ffslvaifFPsvtGilAGanisgdLkDaqkaiPkGtllAilittvvYlssvvlvgacvvrdalgdlndklvsavtslacfseceketckygllnnlvvmslvspfpplivaGiflatlsaaLasLvsaprllqalakDnilpllqvFgkgkgkngEPlrallltaliallfiliaeLdliaPiisnFfLasYalvnlscflasllkspgWRPrfkyynmalsllGailcvaimfvisWvaalvalvialllykyveyk 539
                  ++  ++l  v+l +++i+ G+i  a + + ++g+v+++  + f   + +++ ++  +  f +++aifFP+vt  lAG+n sgdLkD+q++iP Gt++A+++tt+v+ + +++vg++v r+ l+   d+l+                           +++ +p+p l++a ++l+t +aaL+sL +aprll+a+++D+++p l +F  + g+  EP ra+llta+++ ++ +i+eL+l+aP i+++fL++Ya++n +cf+ ++ ksp++RPrfky+++ +sl+G ++c+++mf i+W ++l alv+a+++ykyve +
  MMETSP1174-20130828|20317_1   2 RFSLFFLSGVILGLISIYCGVINLAVNpDDSQGLVGMNDgANFRAAFSADYDKKPIQygFAAMLAIFFPAVTDPLAGSNLSGDLKDPQSSIPPGTIAAVIVTTIVFCIQSLCVGGTVARETLK---DDLLV-------------------------LTKIGWPVPHLVYAAMLLSTNGAALQSLAGAPRLLAAIGRDRLIPQLAFFDPPAGQ--EPRRAVLLTAMLSFAVTMIGELNLVAPFITMWFLTCYAIINGACFILAYDKSPSFRPRFKYFDWRISLFGTLMCLVMMFFINWGVSLAALVLASFIYKYVERQ 288
                  68899*****************9887769999*999875278999****9988754334**********************************************************987654...44444.........................57899**************************************************5..****************************************************************************************************976 PP

  == domain 2    score: 146.2 bits;  conditional E-value: 2.4e-46
    TIGR00930 551 alsysaAlsallrLeevedHvKnyrPqllvltklp......vvrPaLldlasql.kkgkgltivgsvlegklkekvkea...kaaeekikkllekekvkafyevvvaeklreGvraliqaaGlGrlkpntlvlgykkdWrqaeaealetyigilrdafdaelavvvvkvkegfdssvlqaqeeskakslkleasslfqkkqgkgtiDvwWlvd...DGGlllLlpylltqkkkwkkCklrifvvaekddeseeekkdlakllsklRleaevivvlmdisakek.kesveafeemlkklrlekeekerea.kdr..........................................................................klkeekpkkitdkelqsnkkklyrqvrLnevlveksrdAklvllslPvprknsesdelymeflevlsedlprvllvRGnhkevltly 935
                  a  +++A+ +l++Le+++   K +rP ++  +k++      v +  +++l sql k+gkgl iv+ vl+g+++++++ +   ++a++k ++ l+++++++f+++v+a++  eG +  i  aGlG l+pnt++lg++++  + + e+ e+y ++++      ++++++k + +f+ +                      ++   g+iDvwW+++     GlllL+pyll+++k+w++ k+r+ vv    ++  + k++l+k+++   +  ev+vv  + +a ++ + +v++  e++++ r+++e+k +e+  d                                                                           +l + ++ + t   ++s ++      ++ ++l ++s + +lv+++lP  +   +s+  +++ + +l+  l rv++v   +ke + ++
  MMETSP1174-20130828|20317_1 324 ARRFQQARASLIALEDGDIDFKYWRPFIIFCCKTDqekglyVPQAGMINLISQLmKRGKGLAIVAGVLVGDYNSSTELLdlsHQAKRKLREKLKEKHIEGFADIVIAKSEFEGHQLQIHNAGLGVLRPNTVMLGWPTNLGKMSEEEKEEYAQLVKGVAVSAKTLMICKGSVEFPEE--------------------T-ERL-TGNIDVWWVFElfpANGLLLLIPYLLQKHKVWAQAKIRLMVVVTPGTDLFHLKEALNKMIAAGGMVLEVVVVPLEENAAPRfAYNVKEKMEAMERQRSKSETKASESvLDApaseasrdefngsnessltpkikelkemvkttsqattpvsrptpvsrsesgleqrigelkqrvltgetdsetlrQLIDAQDAMST---MESGQETDSYGSKMMSLLAKYSGSSNLVVITLPKQQPQ-QSAGDWLQSVSTLALPLLRVIFVQESGKEKVQFF 771
                  6789******************************98998665555688888775169**************998877551113456677889************************************************************************************....................3.555.5*******87644489********************************************************998888876234555555555555555555554443444678889999*********9999999999999999988888888888888888888888887777777777655444444444433...4555555556679999*****************97665.788999******************9999988887 PP

>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.3   1.7e-14   1.8e-11     217     418 ..      81     277 ..      55     284 .. 0.86

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.7e-14
    TIGR00909 217 aaeevkdperdipkaiilslivvtllYvlvaavvlGvvPfrvlagseaelslvkvsaiqklgalilaagavvsiasvllatlygtsRvlfAlsrdGllpkslskvhektktPyvailifsllaallaslvpleelaeltslglliafvlvavaviilR.rkrPdlqrafkvPlvpvlpalalllclylllelgegtivvklvw 418
                   + + kdp+  ip + i ++iv+t+++ + +  v G v  ++l+++   l+ +        +  ++ a+ ++s+ ++ l  l g  R+l A+ rd l+p+      +  + P+ a+l+ ++l+ +++ ++ l+ +a   ++ +l  +++++ a  il   k+P  +  fk      ++ +  l+cl ++    +g+ +  lv+
  MMETSP1174-20130828|20317_1  81 LSGDLKDPQSSIPPGTIAAVIVTTIVFCIQSLCVGGTVARETLKDDLLVLTKIGWP-----VPHLVYAAMLLSTNGAALQSLAGAPRLLAAIGRDRLIPQLAFFDPPAGQEPRRAVLLTAMLSFAVTMIGELNLVAPFITMWFLTCYAIINGACFILAyDKSPSFRPRFKYF-DWRISLFGTLMCLVMMFFINWGVSLAALVL 277
                  56689****************************************99998888887.....7788999999****************************865555566789****************************************999998626899999999975.445677777889999988888888777665 PP

>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   4.3e-08   4.4e-05     270     430 ..      80     236 ..      18     246 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.3e-08
    TIGR00906 270 ttgeevknPqkaiPigivtsllvifvayvlvsaaltlmlPyqlldedaplavafeyvgwevakyivavGalaalstsllgsafalprvvyamaedgllfkflakinsktktPinatvvsgaiaallaflfdlkalvdllsigtllayslvavcvlvlryqp 430
                    + + k+Pq +iP g++++++v++++++  s ++   +  ++l +d      +   gw v  ++ a+  l +   + l s  + pr++ a+ +d l++++        + P  a + +++++  + ++ +l+ ++ ++++  l  y+++  + ++l y  
  MMETSP1174-20130828|20317_1  80 NLSGDLKDPQSSIPPGTIAAVIVTTIVFCIQSLCVGGTVARETLKDDLL---VLTKIGWPVPHLVYAA-MLLSTNGAALQSLAGAPRLLAAIGRDRLIPQLAFFDPPAGQEPRRAVLLTAMLSFAVTMIGELNLVAPFITMWFLTCYAIINGACFILAYDK 236
                  456789*************************999999999999988853...46789***99998887.5666788899*******************9854444567899***************************************99999999865 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.5     2e-07   0.00021     261     450 ..      81     268 ..      11     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2e-07
    TIGR00911 261 vteEvknPvrtlpiaiiislvivtlvYvltniAYfavlskeellaseavAvdFaerllG.vvklivpvlvglsafGsvngslFsssRlifvaarEGhlPsllsmihvkkltplpsllivctltllaalsgDiyslinlisfanslivalavagllylrykkp.elerpikv.slllpvlfllanlfliilsly 450
                  + +++k+P+ ++p   i ++ + t+v+ +  +    ++++e l     v  +     +G  v  +v + + ls+ G+ + sl    Rl+ + +r+  +P+l ++  +    p  ++l++ +l+  +++ g++ ++  +i+  +  ++a++  + + l y k   + + +k  +  ++ + +l++l ++ +  +
  MMETSP1174-20130828|20317_1  81 LSGDLKDPQSSIPPGTIAAVIVTTIVFCIQSLCVGGTVARETLKDDLLVLTK-----IGwPVPHLVYAAMLLSTNGAALQSLAGAPRLLAAIGRDRLIPQLAFFDPPAGQEPRRAVLLTAMLSFAVTMIGELNLVAPFITMWFLTCYAIINGACFILAYDKSpSFRPRFKYfDWRISLFGTLMCLVMMFFINW 268
                  5688999999999999999999999999999999999998887776665433.....34334444445556899999999999*************************************************99999****9999999998888888776652666669952566777778888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.20s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2318.81
//
Query:       MMETSP1174-20130828|20329_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1174-20130828|20334_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1330.24
//
Query:       MMETSP1174-20130828|20341_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   18.9   0.0    0.00018   18.8   0.0    1.1  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00026   18.5   0.0    0.00031   18.2   0.0    1.1  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
     0.0017   15.6   0.0     0.0019   15.5   0.0    1.0  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.029   11.4   0.0      0.036   11.1   0.0    1.1  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.8e-07   0.00018     188     249 ..      25      84 ..       5      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.8e-07
    TIGR02427 188 rleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdf 249
                     ++++ tl++ G++D ++  +    i +++pg+++ +i++a+H + +e++  f++ l+df
  MMETSP1174-20130828|20341_1  25 FFAQLELRTLIVYGQNDFTAATDA--LILQSIPGSKTLVIPNAGHACYFESTFLFNEGLVDF 84 
                  56678899*********9876665..599****************************99998 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     3e-07   0.00031     227     286 ..      26      84 ..      17      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3e-07
    TIGR01250 227 lkeIkvPtLltvgefdemtpeaaremqekiaksrlvvfedgshltmieepeeylkllkdf 286
                   +++++ tL++ g++d      a  + ++i++s+  v+++++h+ ++e +  +++ l df
  MMETSP1174-20130828|20341_1  26 FAQLELRTLIVYGQNDFTAATDA-LILQSIPGSKTLVIPNAGHACYFESTFLFNEGLVDF 84 
                  5678889********97766555.56678***************************9999 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-06    0.0019     178     249 ..      13      83 ..       2      86 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-06
    TIGR03695 178 atglgkqpslweklkelklpvlylvGekDekFkkiakemqkllpalklevieeaGHnihlenpeafakilee 249
                    +   +  + +  ++l+l++l++ G++D   ++ a    + +p +k  vi++aGH+ ++e +  f++ l  
  MMETSP1174-20130828|20341_1  13 VASSNVKGIFPDFFAQLELRTLIVYGQNDFTAATDALI-LQSIPGSKTLVIPNAGHACYFESTFLFNEGLVD 83 
                  555555666667788999***********655444444.459********************9999887765 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.5e-05     0.036     219     279 ..      26      84 ..       6      86 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.5e-05
    TIGR03343 219 lgeikaktlvtwgrddrfvpldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidf 279
                  + +++ +tl+ +g++d     d  l +++ +p ++  v+++ gh + +e +  fn   +df
  MMETSP1174-20130828|20341_1  26 FAQLELRTLIVYGQNDFTAATD-AL-ILQSIPGSKTLVIPNAGHACYFESTFLFNEGLVDF 84 
                  5678889*******99666655.44.6799**************************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1174-20130828|20343_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|20350_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|20345_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 2048.70
//
Query:       MMETSP1174-20130828|20349_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 862.14
//
Query:       MMETSP1174-20130828|20356_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.8    3.8   9.6        6.8    3.6   6.6    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.6    0.0017       6.8      81     134 ..      20      73 ..      12      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0017
    TIGR00601  81 kakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatale 134
                  +a++  P+ +p+s   pt ++t as ++  ++ P+ +++ + ++ +++ +++l+
  MMETSP1174-20130828|20356_1  20 SAITLGPTVSPSSSYVPTDAPTSASATSTGTKHPSITTPTSAPSYHPTYTPTLA 73 
                  456777888898888888888888888888999999999999888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|20358_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|20355_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-40  135.9   0.0    4.4e-40  135.6   0.0    1.0  1  TIGR03383 urate_oxi: urate oxidase


Domain annotation for each model (and alignments):
>> TIGR03383  urate_oxi: urate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   1.1e-43   4.4e-40      43     201 ..       2     164 ..       1     187 [. 0.87

  Alignments for each domain:
  == domain 1    score: 135.6 bits;  conditional E-value: 1.1e-43
    TIGR03383  43 sytegDnsdvvaTDtvkntvyalakekgvksiEefaaklakhFlekyshveeakveieeapwerievdgkehehsFvrege.etrtaevevkrsgklkvtsglkdltvlkstgseFvgFirdeyttLpetk......dRilateveakWryeeeedatevdfdaay 201
                  s+++gDn ++++T t+knt y+ a +++  s E+++  la+  ++  +h++ +++ei+e pw+ri++ +  h+h+F++ ++  ++t++++v ++g+++v+sg++dl ++k+t+s+F+gFi deyt L +++      dRi++te++a+W+y+   +a +  ++++ 
  MMETSP1174-20130828|20355_1   2 SWLTGDNHQILPTETQKNTCYVNALNTDYDSSESYGLSLARDIMSRHPHITCVHLEIDERPWTRITTTDGGHNHAFMKPKDpWKSTCRLTVPQMGDATVVSGVRDLCLMKTTQSGFAGFIVDEYTNLVPVSpasknpDRIMCTELSATWQYA---RAPTNGYKESN 164
                  789*************************************************************************9976516899*****************************************7653333444**************9...33333355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1206.11
//
Query:       MMETSP1174-20130828|20360_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 608.09
//
Query:       MMETSP1174-20130828|20359_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   13.5   0.3     0.0043   13.1   0.2    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
  ------ inclusion threshold ------
       0.02   12.7   0.0       0.39    8.6   0.1    2.8  2  TIGR01172 cysE: serine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   2.1e-06    0.0043     744     834 ..     109     198 ..      98     266 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-06
    TIGR03683 744 eledllkesaeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaeklaekekvv 834
                  +l+++ ke + ++  ++++  + + r+ +e++e+r ++++ + ++ae+ +  ++ e+ +v++  v++e +d+d +++ +  ++l++ +k  
  MMETSP1174-20130828|20359_1 109 HLDNTRKELS-QVLYQHDAACRVIARLTRELNEARSMLSQRQGQMAEEAAAVVAGESMEVEQSAVLAEITDDDLNKMITKGAQLSQGRKRR 198
                  3444444444.44568899999******************************************************999888885544432 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.07   1.4e+02      73      95 ..     150     172 ..     114     200 .. 0.82
   2 ?    8.6   0.1   0.00019      0.39      96     137 ..     261     302 ..     207     327 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.07
    TIGR01172  73 gvliDhatGvviGetavigddvs 95 
                  g + + a  vv Ge+ ++++   
  MMETSP1174-20130828|20359_1 150 GQMAEEAAAVVAGESMEVEQSAV 172
                  5677889999*****99998654 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00019
    TIGR01172  96 iyqgvtLGgtgkekg..kRhPtvkegvvigagakvLGnievgen 137
                  ++   tL g +k+ +  k hP+  + vvi+a+a  L +i   + 
  MMETSP1174-20130828|20359_1 261 VLA--TLTGHTKKLTacKFHPDASKAVVITASADKLTKIWSADA 302
                  344..554444333225****************99999865554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 1437.84
//
Query:       MMETSP1174-20130828|20370_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.5   0.0      0.022   12.2   0.0    1.1  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2


Domain annotation for each model (and alignments):
>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-06     0.022     106     152 ..      24      72 ..      19      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.5e-06
    TIGR03046 106 ylrdPksydGseesyscrkvsedWledeevenlaafi..lraaqkakgw 152
                  +l +Pk y G  + ++ r +se++le e+  + +++i  lra ++++ w
  MMETSP1174-20130828|20370_1  24 FLMNPKYYPGDRYWFHKRVISESFLESEQDSKASSWIreLRADARSPDW 72 
                  7889*************************99999999778888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 298.92
//
Query:       MMETSP1174-20130828|20371_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-20   69.2   0.0    9.9e-20   68.8   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.5e-05   21.3   0.5     0.0011   15.8   0.1    2.4  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0091   14.0   0.0       0.43    8.6   0.0    2.1  2  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
  ------ inclusion threshold ------
      0.017   11.6   0.0      0.025   11.1   0.0    1.2  1  TIGR01270 Trp_5_monoox: tryptophan 5-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   9.7e-23   9.9e-20       5     163 ..      30     190 ..      27     191 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 9.7e-23
    TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd........dlktkvkslfaklnaepiielsaetgknidklfklve 163
                  k+++vG+ +vGK+tL+ ++ +n    + + ++ + ++++++i+ +  ++++ ++D++Gq +f  + +l+ +e++++ +++d++   +++ +++ ++ ++ +  ++  +++  lv++K D           d++++ ++++++++ +p++ +sa +  n+ klfk v 
  MMETSP1174-20130828|20371_1  30 KCGMVGDMQVGKTTLMVKYVENR-LDEDYIQTLGVNFMEKSIMLRDTEITFSIWDLGGQREFLSMLPLVCNEASAIFFMFDLSRK-STLISIK-EWFRQARGLNR--QAVSFLVGTKYDVFAampqehqeDIDKQARKFAKAMK-APLVFTSATHSINVQKLFKVVL 190
                  99*********************.8888889*****************************************************9.9999999.***********..99999*******9888888887666666655555555.59999*************9985 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0075       7.6     167     194 ..      20      47 ..       4      53 .. 0.68
   2 ?   -1.9   0.0      0.26   2.7e+02      75      93 ..      96     114 ..      65     126 .. 0.81
   3 !   15.8   0.1   1.1e-06    0.0011     289     344 ..     135     191 ..      98     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0075
    TIGR03594 167 eeeeeeeepikiaiiGrpNvGKStLvNa 194
                  +++e+++  +k +++G   vGK tL+ +
  MMETSP1174-20130828|20371_1  20 RSRENDSVVLKCGMVGDMQVGKTTLMVK 47 
                  3333345678999999999999999855 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.26
    TIGR03594  75 laieeadvilfvvdaregl 93 
                  l  +ea++i+f++d   + 
  MMETSP1174-20130828|20371_1  96 LVCNEASAIFFMFDLSRKS 114
                  5678999999999987654 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 1.1e-06
    TIGR03594 289 lvivvNKwDlv..kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                    +v  K+D++    ++++e++ k+  +k++++  ap+vf+SA+++ +v+kl++ + +
  MMETSP1174-20130828|20371_1 135 SFLVGTKYDVFaaMPQEHQEDIDKQ-ARKFAKAMKAPLVFTSATHSINVQKLFKVVLA 191
                  457889***9985566666666666.568888889******************99865 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.015        16     163     185 ..       6      28 ..       2      29 .. 0.88
   2 !    8.6   0.0   0.00042      0.43      59     137 ..     125     201 ..     106     209 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.015
    TIGR02009 163 cvvfEDaeaGveaaraagmfava 185
                   +v+ED+e+G+++ r+ ++++v+
  MMETSP1174-20130828|20371_1   6 NAVMEDGESGIRSERSRENDSVV 28 
                  579************99999986 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00042
    TIGR02009  59 gskelseekieqlaerknelyrellrltgaevlpgienlleelkkkkiavalgsssknakaiLaklgltdlfdavvdas 137
                  + ++l+ ++++ l  +k ++++++ +++ +++ ++ +++ +++ k+++    +++s n ++++ k+ l+++fd +   +
  MMETSP1174-20130828|20371_1 125 QARGLNRQAVSFLVGTKYDVFAAMPQEHQEDIDKQARKFAKAM-KAPLVFTSATHSINVQKLF-KVVLARVFDLRCTLE 201
                  234899999999**************88799999999998876.5789999********9977.577999999887655 PP

>> TIGR01270  Trp_5_monoox: tryptophan 5-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.4e-05     0.025     402     456 ..     151     203 ..     135     208 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.4e-05
    TIGR01270 402 esfeeakeklreftktikrpfgvrynpytesvevlknaksitkvvnelrsdlsvv 456
                  e  e+  ++ r+f+k++k p+   +   t+s++v k  k + + v +lr  l+ +
  MMETSP1174-20130828|20371_1 151 EHQEDIDKQARKFAKAMKAPLV--FTSATHSINVQKLFKVVLARVFDLRCTLENI 203
                  567999**************86..6789*********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 906.89
//
Query:       MMETSP1174-20130828|20375_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 707.08
//
Query:       MMETSP1174-20130828|20376_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 252.33
//
Query:       MMETSP1174-20130828|20377_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1015.30
//
Query:       MMETSP1174-20130828|20386_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1174-20130828|20387_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.67
# Mc/sec: 451.13
//
Query:       MMETSP1174-20130828|20384_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.71
# Mc/sec: 1271.56
//
Query:       MMETSP1174-20130828|20394_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 286.51
//
Query:       MMETSP1174-20130828|20395_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|20390_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 1085.24
//
Query:       MMETSP1174-20130828|20389_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.46
# Mc/sec: 1776.11
//
Query:       MMETSP1174-20130828|20396_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 735.37
//
Query:       MMETSP1174-20130828|20398_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 270.75
//
Query:       MMETSP1174-20130828|20399_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 864.76
//
Query:       MMETSP1174-20130828|20403_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 370.30
//
Query:       MMETSP1174-20130828|20407_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|20406_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|20409_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 767.94
//
Query:       MMETSP1174-20130828|20412_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    4.7   8.9        1.8    4.5   6.1    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.1   0.00045       1.8     325     412 ..      17     104 ..       2     142 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00045
    TIGR00934 325 aktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn.kkdas 412
                  a  k  + sk++r++r+ t + a+a  +++l+ra  ++++  +  +a++ +      + ++ + ++ks+ +++ + + ++++  k + s
  MMETSP1174-20130828|20412_1  17 ASAKKDHASKKARAKRDSTSEGASAERESTLERASAKRESASERASAKRDSAT-EGASAKKRQRVKKSQCERRETASASERRReKEECS 104
                  33333333445555555555555555555555544333333332222221111.11111111111222222221111111111011111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.44
# Mc/sec: 476.96
//
Query:       MMETSP1174-20130828|20413_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|20415_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|20410_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   23.8  11.2    2.6e-06   23.2   7.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    1.5e-05   20.8  15.4    1.5e-05   20.8  10.7    1.5  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   7.8   1.3e-09   2.6e-06     221     402 ..     205     386 ..     175     419 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.3e-09
    TIGR02169 221 kreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaeke.eeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeel 402
                  +  +++ l+l++l +   +   +e+++a++++e+ +l++e +e  +el e+ ++l  +nk++++ +  ++l + + l+++++++++l+++  +       +++e+       i ++ +ei+ l+++i++ ++  +  +++l+ ++ ++ + ++++     e ++  +el  l  k+  l+++ 
  MMETSP1174-20130828|20410_1 205 LGAVNVCLKLQNLPEIVISTTDVEADIATKQQEQLQLQVEYDEATQELTEAGDELVLANKEVDECTHANML-LNQSLQSMEMSLSSLNQQHTALLvATHTNSQETTDARATAIAAITAEITPLRERITQTRALFTDSSTALATARSNRTNAQSRVTTATREKNAKSRELRTLAGKVTLLQSKN 386
                  666788899999999999**********************************************8887766.8999***********9987766515667788888888999*******************************************9999999888888888877766665543 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  10.7   7.3e-09   1.5e-05     256     417 ..     225     387 ..     164     421 .. 0.62
   2 ?   -2.6   0.1     0.084   1.7e+02     193     224 ..     793     824 ..     792     834 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 7.3e-09
    TIGR02168 256 eeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleele.skkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerre 417
                  ++ ea+++++++e  +l+ e  e+ +el+e+ +el  +++e++++++  + l+++l+++e +l++l++q + l  ++ ++++e +++ ++ ++ +++e++ l++++++ +a + +++++l++++ + ++++s+v  +++++++ + el++l  +++ l+++++
  MMETSP1174-20130828|20410_1 225 TDVEADIATKQQEQLQLQVEYDEATQELTEAGDELVLANKEVDECTHANMLLNQSLQSMEMSLSSLNQQHTALLvATHTNSQETTDARATAIAAITAEITPLRERITQTRALFTDSSTALATARSNRTNAQSRVTTATREKNAKSRELRTLAGKVTLLQSKNK 387
                  4445555555555555555555555555555555555555555555555555555555555555555555443313344444444455555555555555555555555555555555555555555555555555555555555555555555555555544 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.084
    TIGR02168 193 dilkElerqlksLerQaekAekykelkeelre 224
                  dil+E+ rq ++++rQ ++ ++  +l+ ++++
  MMETSP1174-20130828|20410_1 793 DILAEITRQTDEITRQNDEITRRLQLTVDYQH 824
                  89999999999999999888877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.56
# Mc/sec: 1968.26
//
Query:       MMETSP1174-20130828|20416_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 754.81
//
Query:       MMETSP1174-20130828|20417_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1690.19
//
Query:       MMETSP1174-20130828|20423_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-20   71.5   0.5    1.8e-20   71.5   0.3    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.7e-13   46.6   0.5    4.3e-13   46.4   0.3    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    0.00028   18.9   0.0    0.00032   18.7   0.0    1.0  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.3   1.3e-23   1.8e-20      15      70 ..       3      57 ..       1      61 [. 0.93

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 1.3e-23
    TIGR02349 15 eeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagl 70
                 ++ikkAYr+la ++HPD+n+ ++ aeekfkei+ A+ vL de +ra+YD  g ++ 
  MMETSP1174-20130828|20423_1  3 AQIKKAYRRLALQFHPDKNH-SPSAEEKFKEISAAFAVLGDEARRAKYDVSGASEE 57
                 58******************.****************************9987765 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.3   3.1e-16   4.3e-13      18      68 ..       4      54 ..       2      61 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 3.1e-16
    TIGR03835 18 eikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGh 68
                 +ikka+r+La ++hPD+n+ + a++ f+ei  a+ vL +  +ra+yD  G 
  MMETSP1174-20130828|20423_1  4 QIKKAYRRLALQFHPDKNHSPSAEEKFKEISAAFAVLGDEARRAKYDVSGA 54
                 7**********************************************8775 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-07   0.00032       8      56 ..       5      49 ..       2      58 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.3e-07
    TIGR00714  8 LrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 ++k yr+l  q+HPD  k+      a ++  e+  A+  L d  +Ra+y
  MMETSP1174-20130828|20423_1  5 IKKAYRRLALQFHPD--KNHS--PSAEEKFKEISAAFAVLGDEARRAKY 49
                 7899***********..3333..36778999****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|20425_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 823.79
//
Query:       MMETSP1174-20130828|20426_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-29  101.6   4.9    4.5e-21   73.5   0.4    2.0  2  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    8.5e-06   23.2   1.4    8.8e-06   23.1   0.1    1.6  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.4   2.2e-24   4.5e-21      70     224 ..      17     176 ..       3     183 .. 0.90
   2 !   30.4   0.2   2.9e-11     6e-08     217     264 ..     206     252 ..     193     255 .] 0.85

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 2.2e-24
    TIGR00817  70 pvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgr.efpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvsl 224
                   + +  t+g +++n +ls  + Sft t+k+ epi s+ l +++ g+  + +  +++ +pi +Gv las  ++sf ++gfl a++sn  f  r + sK++         ld+l l+  is   l ++ p a+i eg  l+  +f+  +s++ ++++v  +l
  MMETSP1174-20130828|20426_1  17 SISLTYTLGFIFTNIALSRCNASFTETVKSAEPISSLTLAQLMRGEdAVSIVEWMTAIPIAMGVGLASYSDASFHIVGFLMAVLSNFMFSLRGLHSKQLRRLYgspaGLDDLHLFYRISRYGLSIVVPLALIFEGRALVRMAFFSEGSSSIDNEAVFSAL 176
                  6677889**********************************999872578899********************************************98776599999********************************99998888777766655554 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 2.9e-11
    TIGR00817 217 lklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvv 264
                  +++++ +l+    ++ +y+q +f +l rvs +t++  Nv++Rvv+I++
  MMETSP1174-20130828|20426_1 206 QHVFAAMLLNGV-CYCVYNQASFLVLSRVSFMTHATLNVMRRVVIITA 252
                  566766666665.*********************************75 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.3e-09   8.8e-06      59     155 ..      24     120 ..       4     130 .. 0.82
   2 ?   -2.5   0.1      0.29   5.9e+02      50      64 ..     212     226 ..     200     250 .. 0.53

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.3e-09
    TIGR00950  59 vfyvllflavkkltvaiaalllvlaPlyvtllsdlleke.rvrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeg 155
                  + + +  +a  + +++++  + +  P+ +++l +l++ e  v++ ++++a+   +G v l s++ +s+   G+l+++ls++ f l  + +k+l++ +g
  MMETSP1174-20130828|20426_1  24 LGFIFTNIALSRCNASFTETVKSAEPISSLTLAQLMRGEdAVSIVEWMTAIPIAMG-VGLASYSDASFHIVGFLMAVLSNFMFSLRGLHSKQLRRLYG 120
                  4455555788899***********************85525788888777777777.45788899***************************998777 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.29
    TIGR00950  50 lllgalqlgvfyvll 64 
                  +ll  ++  v++   
  MMETSP1174-20130828|20426_1 212 MLLNGVCYCVYNQAS 226
                  333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.49
# Mc/sec: 686.88
//
Query:       MMETSP1174-20130828|20427_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 482.44
//
Query:       MMETSP1174-20130828|20430_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|20428_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.54
# Mc/sec: 897.04
//
Query:       MMETSP1174-20130828|20433_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|20438_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.51
# Mc/sec: 390.79
//
Query:       MMETSP1174-20130828|20443_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 452.96
//
Query:       MMETSP1174-20130828|20445_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.51
# Mc/sec: 212.22
//
Query:       MMETSP1174-20130828|20447_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 421.51
//
Query:       MMETSP1174-20130828|20446_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 469.64
//
Query:       MMETSP1174-20130828|20444_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1440.88
//
Query:       MMETSP1174-20130828|20449_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1126.03
//
Query:       MMETSP1174-20130828|20453_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 866.39
//
Query:       MMETSP1174-20130828|20451_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   21.1  49.7    1.2e-05   21.1  34.5    1.8  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    4.2e-05   19.2  47.4    4.2e-05   19.2  32.8    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  34.5   5.9e-09   1.2e-05     668     927 ..     187     444 ..     183     462 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.9e-09
    TIGR02168 668 ektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrekla 927
                  +k+e+++ + + +i++ e++++++e+k+ +le+++++ + +l ++e  ++++++e++ ++ +l +++ ++ +l +ev++l+++l+ l+++l+  e+e +++++e + ae+++ +  +e++ l++e+++ k+ l+  +++  ++++e+++ +++ ++ e++l+++e +++++ ++ ++ + +++e ++++ + ++e++ ++  ++el+e++e+++ + ++++ +++  ++  +   +++ + ++++   + ++e ++e  +
  MMETSP1174-20130828|20451_1 187 AKREAQTAKSQLKIAKSETQTAQTESKAIALEMQAAMSQLQLAQAE--AKSAQAEAKAAKMQLCAAEDNAPKLGSEVQALQRELDTLKAALQLSEAETQSAHAEAKAAEDNALKLGAEVQGLRRELDESKATLQLFKAEAGSAKEEVNAANIRTQSIESKLKDSEVDLHRCMTKQNDFQLALQESQAKLLASSEELNLTRVLCKELREQVESAQIQLRAEQSKIDMENKTAQIGVDSILQNSTAQGVQQGNVEDRQETEE 444
                  3455666666666777777777777766666665555554444444..55666666666677777777777777777777777777777777777777777777777777777777777778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887777777776666665555555555544444444444444444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2  32.8   2.1e-08   4.2e-05     255     501 ..     112     360 ..      97     369 .. 0.86
   2 !    3.1   9.4    0.0015         3     290     414 ..     338     462 ..     332     474 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.1e-08
    TIGR02169 255 ekleeeieelekeleeiekkle.elnkkieklg.eeeqlavkekleelkae..iekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqak 501
                  ++  + ++e+e e e+i++ le + n+k ++   e  +l+ +e+le+ ++e   ++le+++a +  +l ++e++ ak ea+  k + +i++ e++ +  + e +++  e++++  +l+  +ae+++ ++ea++++ +l +++ +  kl +e + l+reld l+  l+  e+e + ++ae +++e++  +l +e++ l+ e+ +++  l+  k++  +a++e+ + +   +++e++l+++e +l++  ++++
  MMETSP1174-20130828|20451_1 112 TEAPAARQEKEIENEKINDLLEsQENAKCNRAElEVAYLEAQEELESAESEkkTAHLEAQVAREDARLAKLEAEAAKREAQTAKSQLKIAKSETQTA--QTESKAIALEMQAAMSQLQLAQAEAKSAQAEAKAAKMQLCAAEDNAPKLGSEVQALQRELDTLKAALQLSEAETQSAHAEAKAAEDNALKLGAEVQGLRRELDESKATLQLFKAEAGSAKEEVNAANIRTQSIESKLKDSEVDLHRCMTKQN 360
                  5555677888888899999997356778776331556789999**9998872256789999999999999999999999999999999998887665..5566667778889999999999999*********************************************************************************************************************9999888776 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0015
    TIGR02169 290 qlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlle 414
                  +  + +kl++ +++++++  ++++ +  l++++++l    +e++ ++   +el++++e+ +++ ++ +++++ ++++ +  +  + + ++++   + ++++++e  ek ++++  +    +r+le
  MMETSP1174-20130828|20451_1 338 TQSIESKLKDSEVDLHRCMTKQNDFQLALQESQAKLLASSEELNLTRVLCKELREQVESAQIQLRAEQSKIDMENKTAQIGVDSILQNSTAQGVQQGNVEDRQETEEKSESKRPLIDDAPRRKLE 462
                  5679999*****************************************************************99999999999999999999999999999999888888888777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       555  (0.1353); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.18s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 897.17
//
Query:       MMETSP1174-20130828|20457_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 427.83
//
Query:       MMETSP1174-20130828|20459_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|20456_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 457.56
//
Query:       MMETSP1174-20130828|20461_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|20462_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|20460_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   13.2   0.1      0.017   12.3   0.1    1.4  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   4.1e-06     0.017      39     111 ..     326     404 ..     316     439 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.1e-06
    TIGR03516  39 ernkkliaae...eaaikkiiakdsevkyetskkGfwyayk..kkdtte.tktpetgDlvsfeyeikaldgdviyskee 111
                  +++kk+   e   ++ +k++ +++ +  y++ +k  +y+y+  +k+  e +k  + g++v++  ++k+++gd   s  e
  MMETSP1174-20130828|20460_1 326 NEDKKIHPDEfffQERLKRFWHNNMRLPYFRGDKVVFYTYDpgQKSRREmQKSKNLGEIVYYRKNVKHMSGDDEASGFE 404
                  56677766555557899***********************83334333314556789*************997666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1995.36
//
Query:       MMETSP1174-20130828|20465_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 498.63
//
Query:       MMETSP1174-20130828|20469_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 206.59
//
Query:       MMETSP1174-20130828|20468_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1204.40
//
Query:       MMETSP1174-20130828|20471_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 828.89
//
Query:       MMETSP1174-20130828|20473_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|20470_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-107  354.4   0.0   1.1e-106  354.3   0.0    1.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.2e-20   71.6   0.0    9.9e-20   68.6   0.0    1.9  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    5.4e-18   63.0   0.0    9.6e-18   62.1   0.0    1.4  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    4.8e-16   56.6   0.0    6.4e-16   56.2   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.2e-09   35.6   0.0    4.6e-06   23.8   0.0    2.0  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    4.1e-08   30.3   0.3    6.9e-05   19.7   0.0    2.9  3  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.3e-05   22.5   0.0    1.5e-05   22.3   0.0    1.2  1  TIGR01746 Thioester-redct: thioester reductase domain
    5.7e-05   20.3   0.0       0.12    9.4   0.0    2.2  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
  ------ inclusion threshold ------
      0.026   11.3   0.0      0.065   10.0   0.0    1.6  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.3   0.0  2.3e-109  1.1e-106      35     331 ..       6     309 ..       1     310 [. 0.93

  Alignments for each domain:
  == domain 1    score: 354.3 bits;  conditional E-value: 2.3e-109
    TIGR01179  35 gskealkalekitevklvegdladkekleavleee..kidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEespln..pinpYGrsklmvErilkdlkka..dkelkvviLRYFnvaGAdeegeiGeasknat.hliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeg.gesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklkeg 331
                  + +++ k  ++  +++++e d+++ e+++++l++    ++a iHfa+l+avgEs++ Pl YY+nnv +t+ Ll+a+++ g +++iFsssa+vYg++ ++pi+Ee p +   +npYGr+k ++E+il d++++   +e+ + iLRYFn++GA+e+g iGe++++ + +l++ va+vavg+++ l+++G dy+t+DGt+vRDyiHv+Dla++Hlaal+ l +g g+ +v+nlG+gqg+sv+++++a+++++  ++++ l++rR+GD+a+++ad+sk+k+elgw++++d L +++ + w+W++ +++g
  MMETSP1174-20130828|20470_1   6 SLRRVAKLSNRAANLNFIEEDIRNLESISRILDAMpvPPQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHARGTRRFIFSSSATVYGSEATLPITEENPAGlhITNPYGRTKYVIEEILGDFSRSpeGQEWGISILRYFNPVGAHESGLIGEDPSGVPnNLMPFVAQVAVGRLPLLKVYGSDYDTPDGTGVRDYIHVTDLADGHLAALRHLDNGtGGIHVFNLGTGQGYSVLDMVKAMETACSCEVPYVLEPRRPGDVAAMYADPSKAKAELGWSAHRD-LMTMCDDLWRWQSDNPQG 309
                  33344444455559******************97612579****************************************************************99766599*****************99833579****************************9******************************************************96789***********************************************************99.**************9987 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   2.2e-22   9.9e-20      47     294 ..      16     288 ..       7     291 .. 0.81

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 2.2e-22
    TIGR04180  47 vkkeievvlGdirdaesvkkavkgv....dvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhp..lqaqsPysaskigadqlalsfyrs...felPvaivrPfntyGPrqsa.....raviPt....iitqilsgkkki.kl.Gsl......sPtrdfnyvkdtvegfia.vaesdkavG..evinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkp 294
                     +++ +  dir+ es+++++  +    ++ +h+a l a+  s   p  y + nv Gt+ +l+a +  ++++++ +s++ vyG+  ++Pi+e+ p  l+   Py  +k   +++   f rs    e  ++i+r fn  G   s       + +P      ++q++ g+  + k+ Gs       +  rd+ +v+d ++g +a + + d+ +G  +v+n+g+++  s+ d+vk ++ +   ev  v + +r  P   +v  ++ad sk+k+ +gw++
  MMETSP1174-20130828|20470_1  16 RAANLNFIEEDIRNLESISRILDAMpvppQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHARGTRRFIFSSSATVYGSEATLPITEENPagLHITNPYGRTKYVIEEILGDFSRSpegQEWGISILRYFNPVGAHESGligedPSGVPNnlmpFVAQVAVGRLPLlKVyGSDydtpdgTGVRDYIHVTDLADGHLAaLRHLDNGTGgiHVFNLGTGQGYSVLDMVKAMETACSCEVPYVLEPRR--P--GDVAAMYADPSKAKAELGWSA 288
                  5678999************9998874444679***************************************************************94457889*****************993334689***********999962222212334321115688888876432433543121111456************876266779999845689*************************99999875..5..5899**************987 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   2.1e-20   9.6e-18      40     314 ..       4     306 ..       1     310 [. 0.77

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 2.1e-20
    TIGR01181  40 kenlkdled....eerysfvkgdiadrelverllkeed..vdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayart...yglpvlitrcsnnyGpyq..........fpekliPllitnalagkk.lpvyG......dGqqvrDwlyveDhcraielv...lekgrvg.evyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                   e+l+ +++     ++++f++ di + e ++r+l+ +   ++a ++fa    v +s s p ++ + nv Gt  ll a++++  + r++  s   vyG+  +   + ++   l+ ++Py  +k   + ++  + r+    +  ++i r  n +G+++           p+ l+P + + a+   + l+vyG      dG+ vrD+++v+D + +  +    l++g+ g +v+n+g+++  ++l++vk +      +e        rpG+      d sk k+eLgw+ + ++        +W  +n
  MMETSP1174-20130828|20470_1   4 SESLRRVAKlsnrAANLNFIEEDIRNLESISRILDAMPvpPQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHAR-GTRRFIFSSSATVYGSEATLPITEENPAGLHITNPYGRTKYVIEEILGDFSRSpegQEWGISILRYFNPVGAHEsgligedpsgVPNNLMPFVAQVAVGRLPlLKVYGsdydtpDGTGVRDYIHVTDLADGHLAAlrhLDNGTGGiHVFNLGTGQGYSVLDMVKAMETACS-CEVPYVLEPRRPGDVAAMYADPSKAKAELGWSAHRDLMTMCDDLWRWQSDN 306
                  555555543111145799****************98652279************************************994.6788***********9887755333445699********************983334566889999999997753333333333689999998888877776369***7777777***********9766544430115566655479***************98766655.55555555679**9988888************9999888777777777666 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.4e-18   6.4e-16      48     272 ..      25     264 ..       5     289 .. 0.70

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1.4e-18
    TIGR02197  48 dyidkeellerlekeelkkveavfHeg...AisdTteldgellmenNyeyskellelcaeke.vkliYASSAavYGdseeefreekele..rPlNvYgySKllfDelvrkev.lkekksaqvvGlryFNVyGprEe.hKgkmaSvv....fklfnqikkekkv..kLFksseqlkdGeqlRDFvyvkDvvkvnllllekke..ksG..ifnvGtgkarsfndlaaavvkalgkdekieyidmP 272
                  ++i + e ++r+ +      +a +H +   A+ + t +  ++  +nN+  + +ll++  +++  ++i+ SSA+vYG++++   +e++ +  +  N Yg  K +++e++ +    +e ++  +  lryFN  G +E+   g+  S v    + ++ q++ ++ +  k++ s  ++ dG  +RD+++v D ++  l +l++ +  + G  +fn+Gtg+  s  d+++a+ +a++   ++ y+  P
  MMETSP1174-20130828|20470_1  25 EDIRNLESISRILDAMPVPPQACIHFAglkAVGESTSVPLDY-YDNNVGGTVALLKALHARGtRRFIFSSSATVYGSEATLPITEENPAglHITNPYGRTKYVIEEILGDFSrSPEGQEWGISILRYFNPVGAHESgLIGEDPSGVpnnlMPFVAQVAVGRLPllKVYGSDYDTPDGTGVRDYIHVTDLADGHLAALRHLDngTGGihVFNLGTGQGYSVLDMVKAMETACSC--EVPYVLEP 264
                  555555555555555555666777765333566666666665.6999999999999887775168***********776655555555567899*************985430345666667779*********97334555554411113344455544443125677778889*****************99999884311445667*****************9999984..46666555 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-08   4.6e-06      46     163 ..       9     129 ..       1     155 [. 0.76
   2 !   10.0   0.0   0.00016     0.071     223     330 ..     202     303 ..     197     308 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1e-08
    TIGR02622  46 ellklakklkd.ssvlgdirdaeklekaieev..kPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalGGh..DpYsaskaaael 163
                   ++kl+++  + + +  dir+ e+++++++ +   P+  +h+a    v +s + Pl+ ++ nv Gtv ll+a++a   ++  +   s  vY   e +    e+++ G h  +pY   k  +e 
  MMETSP1174-20130828|20470_1   9 RVAKLSNRAANlNFIEEDIRNLESISRILDAMpvPPQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHARG-TRRFIFSSSATVYGS-EATLPITEENPAGLHitNPYGRTKYVIEE 129
                  45555555544245778***********9975327*************************************98877.666778888888865.55556666666665433677777666665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00016
    TIGR02622 223 avrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWy 330
                   vr + hv +   G+l   ++l +++    + fn+G  +    +v ++vk+++++  +   e+    ++++p +   +  d +kak++lgw+++ +l +  +   +W 
  MMETSP1174-20130828|20470_1 202 GVRDYIHVTDLADGHLAALRHLDNGTGG-IHVFNLGTGQ--GYSVLDMVKAMETACSC---EVPYVLEPRRPGDVAAMYADPSKAKAELGWSAHRDLMTMCDDLWRWQ 303
                  689999*********9998888888666.559****887..78899999988888776...4444556889**********************999999998888886 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07   6.9e-05      83     160 ..      64     141 ..       8     165 .. 0.81
   2 !    5.7   0.1    0.0028       1.3     203     223 ..     206     226 ..     200     267 .. 0.77
   3 ?    1.5   0.0     0.052        23     291     308 ..     272     289 ..     269     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-07
    TIGR03466  83 eelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae..gl 160
                   + y++nv gt a+l+a + +g +r +++ss ++ g  e   + +e++p+ l ++  +Y r+k++ E+++ +++++  g+
  MMETSP1174-20130828|20470_1  64 LDYYDNNVGGTVALLKALHARGTRRFIFSSSATVYGS-EATLPITEENPAGL-HITNPYGRTKYVIEEILGDFSRSpeGQ 141
                  56799***********************999888885.55578888888876.57799**********999998865444 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0028
    TIGR03466 203 lvdvddvaegHllAlerGriG 223
                   ++v d a+gHl+Al++   G
  MMETSP1174-20130828|20470_1 206 YIHVTDLADGHLAALRHLDNG 226
                  69************9874433 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.052
    TIGR03466 291 kmffssakAereLgyrqr 308
                   m+ + +kA+ eLg+ ++
  MMETSP1174-20130828|20470_1 272 AMYADPSKAKAELGWSAH 289
                  69************9764 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-08   1.5e-05     111     191 ..      69     149 ..      66     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 3.2e-08
    TIGR01746 111 aNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr....glpvtivR 191
                   NV gtv++l+   ++ ++ +i+ S++ v+  +   + ++   + + +   ++++Y+++K+v E ++   s+        ++i+R
  MMETSP1174-20130828|20470_1  69 NNVGGTVALLKALHARGTRRFIFSSSATVYGSEATLP-IT---EENPAGLHITNPYGRTKYVIEEILGDFSRSpegqEWGISILR 149
                  7***********99999999*********99755443.33...33345566789***********99776665554444455555 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00035      0.16      62     160 ..      26     125 ..       6     137 .. 0.74
   2 !    9.4   0.0   0.00027      0.12     300     331 ..     265     296 ..     204     303 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00035
    TIGR01472  62 dltdsssllkliee..ikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektp..fnprspyaaakl 160
                  d+ +  s+ ++++   + p+    +a    v  s  +p    d +  Gt+ ll+a++  +     rf  +s++ +yG+    p +e+ p  ++   py+ +k 
  MMETSP1174-20130828|20470_1  26 DIRNLESISRILDAmpVPPQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHARGT---RRFIFSSSATVYGSEATLPITEENPagLHITNPYGRTKY 125
                  5555556666665422456666777777777777777755555566699****99988775...579999****************99955678899998886 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00027
    TIGR01472 300 frptevdlllGdatkakeklgwkrevslkelv 331
                   rp +v  +  d++kak +lgw  + +l  + 
  MMETSP1174-20130828|20470_1 265 RRPGDVAAMYADPSKAKAELGWSAHRDLMTMC 296
                  59*********************998887665 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014     0.065      52     125 ..      17      94 ..       3     161 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
    TIGR03589  52 edklrffiGdvrdkerleraledv....dlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst 125
                  + +l f   d+r+ e ++r l+ +       +h a lk v  +   Pl+    n+ G+  +++a  ++g ++ +  s+
  MMETSP1174-20130828|20470_1  17 AANLNFIEEDIRNLESISRILDAMpvppQACIHFAGLKAVGESTSVPLDYYDNNVGGTVALLKALHARGTRRFIFSSS 94 
                  467888889****999999998873334569**********************************9999999886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 892.36
//
Query:       MMETSP1174-20130828|20474_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 373.97
//
Query:       MMETSP1174-20130828|20475_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|20477_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1174-20130828|20478_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 916.59
//
Query:       MMETSP1174-20130828|20481_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-09   33.0   0.0    5.7e-07   27.2   0.0    2.3  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.87   3.6e+03      25      31 ..       2       8 ..       2       8 .. 0.74
   2 !    3.9   0.0    0.0037        15      25      34 ..      16      25 ..      11      26 .. 0.83
   3 !   27.2   0.0   1.4e-10   5.7e-07       1      31 [.      27      57 ..      27      58 .] 0.95

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.87
    TIGR00756 25 eMkergi 31
                 eM+ +gi
  MMETSP1174-20130828|20481_1  2 EMLGSGI 8 
                 7888876 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0037
    TIGR00756 25 eMkergivPd 34
                  M+ rg+ P+
  MMETSP1174-20130828|20481_1 16 AMRNRGVQPN 25
                 5********9 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 1.4e-10
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergi 31
                 +++n+ is++ k+g++ +Alelf+e++ +g+
  MMETSP1174-20130828|20481_1 27 FSFNAAISACQKSGQWGKALELFQEIRQSGL 57
                 58**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1174-20130828|20479_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 865.26
//
Query:       MMETSP1174-20130828|20483_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|20486_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1174-20130828|20488_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 226.86
//
Query:       MMETSP1174-20130828|20489_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|20490_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 879.93
//
Query:       MMETSP1174-20130828|20492_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   34.9   0.0    2.4e-09   34.6   0.0    1.1  1  TIGR03175 AllD: ureidoglycolate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03175  AllD: ureidoglycolate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0     6e-13   2.4e-09     220     319 ..      53     158 ..      42     171 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 6e-13
    TIGR03175 220 iagpkgyglmmmvdvlsgsllglpfgkhvssmy.....edltegrnlgqlflvinpafftdleafkkqisqmleelk.avkaaegfkqvyypgergklkskkadke 319
                  +ag kgyg   +v++l+ +l   pfg ++s  +     e  ++   lg +f+ i+  +ft+l+afk + s++l+ l+ + k   g +++y  ge +++   + ++ 
  MMETSP1174-20130828|20492_1  53 MAGYKGYGYAAVVEMLCSALQDNPFGAELSDKFlgpagEICRRPSVLGHFFIAIDVERFTSLHAFKGKTSEILNSLReSRKDPSGPGRIYTAGEPEHIAWTHRQST 158
                  79****************************9983332122344567*****************************973677889**********999987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|20491_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 824.13
//
Query:       MMETSP1174-20130828|20494_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.4   0.0     0.0046   14.3   0.0    1.5  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0054   14.8   0.0       0.01   14.0   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
  ------ inclusion threshold ------
      0.042   11.0   0.0       0.06   10.4   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
       0.05   11.2   0.0      0.084   10.5   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.5e-06    0.0046      90     149 ..      69     130 ..      54     142 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.5e-06
    TIGR03534  90 lkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglke.veflksdlle 149
                   +v++ gtGsGa+  a++  l p+ +++  +++e+ +  a + +k +gl++ v++ + d++ 
  MMETSP1174-20130828|20494_1  69 FTVIESGTGSGALSTAIMRALsPNGHLHTFEFNENRALAATREFKLNGLEHlVTVRHRDVCG 130
                  58999*************9976999********9999999999*******999999999864 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   9.8e-06      0.01      10      76 ..      58     125 ..      56     155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.8e-06
    TIGR02469  10 ltLakLrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieiveg 76 
                  l++  L +++g ++++ G G+G ++  ++r++   g++ ++e ne+++   ++  + +g+++ ++v+ 
  MMETSP1174-20130828|20494_1  58 LIVFMLGIRPGFTVIESGTGSGALSTAIMRALSPnGHLHTFEFNENRALAATREFKLNGLEHLVTVRH 125
                  6777899**********************987655***********9999999998888888887774 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.9e-05      0.06      21      90 ..      59     134 ..      50     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.9e-05
    TIGR00755  21 iveaaeveesdvvlEiGpGlGaLTeellekakk...vvaiEiDkrlaekLrkkle...leekleviegDalkldle 90 
                  iv  + ++++ +v+E G G GaL+ ++++  ++   ++++E  ++ a + +++++   le+ ++v ++D++   + 
  MMETSP1174-20130828|20494_1  59 IVFMLGIRPGFTVIESGTGSGALSTAIMRALSPnghLHTFEFNENRALAATREFKlngLEHLVTVRHRDVCGNGFS 134
                  77788899999*************999876543344*******999999999998778889999999999877666 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.2e-05     0.084      60     136 ..      50     127 ..      38     137 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.2e-05
    TIGR00080  60 isaphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLel.dnvivkegD 136
                  i   +  a ++ +L + +g  v+e GtGsG ++  + + +  +g   + e  e+ +  a r++k  +l + v+v++ D
  MMETSP1174-20130828|20494_1  50 IVYELDAALIVFMLGIRPGFTVIESGTGSGALSTAIMRALSPNGHLHTFEFNENRALAATREFKLNGLeHLVTVRHRD 127
                  555556677788899***************8766666667778*9999999999999998888876651457777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1049.63
//
Query:       MMETSP1174-20130828|20495_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.70
# Mc/sec: 626.01
//
Query:       MMETSP1174-20130828|20496_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 368.79
//
Query:       MMETSP1174-20130828|20497_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1174-20130828|20501_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:01.00
# Mc/sec: 68.63
//
Query:       MMETSP1174-20130828|20502_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|20506_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1174-20130828|20505_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1250.90
//
Query:       MMETSP1174-20130828|20508_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 954.09
//
Query:       MMETSP1174-20130828|20504_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1418.88
//
Query:       MMETSP1174-20130828|20512_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 552.93
//
Query:       MMETSP1174-20130828|20514_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|20516_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1174-20130828|20515_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1573.17
//
Query:       MMETSP1174-20130828|20518_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-11   39.8   0.0    4.7e-07   27.0   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-10   4.7e-07      29     184 ..       7     158 ..       2     184 .. 0.77
   2 !   11.0   0.0   8.3e-06     0.034     256     299 ..     196     239 ..     182     257 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.1e-10
    TIGR01293  29 sdeqaedllklayesginlfdiaevyaagkaetelgkilkkkgwrrssyvittkifwggkaeeergl.srkhiieglkaslerlqleyvdivlan.....radpsspme.....evvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlf 184
                    +  ++++  a+  g   fd+a vy     e+ +g+ + + g  rs + +t+k+  +     e+g  s k    +++aslerl+  y+d+ l++     ++  +sp +     +  ra+     qgla + g s +    + +   ++r    ipp v+q e+h  
  MMETSP1174-20130828|20518_1   7 KGDIVKAMVCEALALGARAFDTASVYR---NEAAIGEAIVESGIARSELFLTSKLGPS-----EQGYeSAK---RAIHASLERLKTGYLDLYLIHwpgsvKTPQASPKNrenrlDSWRALEEAQAQGLARHIGVSNFNVSHLQDLLVQSR----IPPAVNQVEFHAE 158
                  567777888889999***********9...99**********************9776.....55541445...4679****************9333322223345432222246799999*************999988888777666....8999999999965 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.3e-06
    TIGR01293 256 laalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslg 299
                  +  +a +lg + aq+ i w +++ + +sv++ +s+   l e+l 
  MMETSP1174-20130828|20518_1 196 VVDIASRLGLSEAQILIKWGIQRTNGHSVVFRTSNCAHLPENLA 239
                  5689***********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1037.58
//
Query:       MMETSP1174-20130828|20527_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 454.20
//
Query:       MMETSP1174-20130828|20531_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|20533_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|20535_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 750.97
//
Query:       MMETSP1174-20130828|20540_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1174-20130828|20541_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 255.46
//
Query:       MMETSP1174-20130828|20546_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 534.90
//
Query:       MMETSP1174-20130828|20548_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1279.89
//
Query:       MMETSP1174-20130828|20550_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|20547_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 691.51
//
Query:       MMETSP1174-20130828|20549_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1072.83
//
Query:       MMETSP1174-20130828|20555_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|20556_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1123.91
//
Query:       MMETSP1174-20130828|20563_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 271.05
//
Query:       MMETSP1174-20130828|20562_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-08   30.7   0.0    8.9e-08   29.9   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.7e-07   26.5   0.0    4.6e-07   26.2   0.0    1.1  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
    5.3e-06   23.8   0.0    9.1e-06   23.0   0.0    1.3  1  TIGR00436 era: GTP-binding protein Era
    2.7e-05   21.2   0.0      4e-05   20.7   0.0    1.1  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
    0.00031   17.7   0.0    0.00045   17.2   0.0    1.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00059   17.1   0.0    0.00094   16.4   0.0    1.3  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0049   13.6   0.0     0.0084   12.8   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
  ------ inclusion threshold ------
      0.023   11.6   0.6      0.036   11.0   0.0    1.6  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.7e-10   8.9e-08       7      83 ..      12      87 ..       8     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.7e-10
    TIGR00231  7 vivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslev 83
                 +++G+ + GKs++ ns+l ++ +i+ ++p  vt +   e +e++G    v ++DT+G  d d  +  +++e +rsl  
  MMETSP1174-20130828|20562_1 12 LLLGKTGRGKSATGNSILNREAFISRRGPtAVTAKCQVEEVEIKG--RLVRIVDTPGLFDPDVSNAEVIQELARSLTL 87
                 789**************************77999999999*****..78********777766666677777777654 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     9e-10   4.6e-07     120     185 ..      10      76 ..       6     145 .. 0.65

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 9e-10
    TIGR00993 120 nilvlGkaGvGksatinsilgevkasidafgla.ttsvreieGlvdGvkirvidtpGlkssaldqsk 185
                  n l+lGk+G Gksat nsil+   +       a t + +  e  ++G  +r++dtpGl    + +++
  MMETSP1174-20130828|20562_1  10 NWLLLGKTGRGKSATGNSILNREAFISRRGPTAvTAKCQVEEVEIKGRLVRIVDTPGLFDPDVSNAE 76 
                  7799****************9877655444344144444444569*************876555444 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.8e-08   9.1e-06       6     117 ..      14     130 ..      12     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.8e-08
    TIGR00436   6 lGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasq.iifiDtPGlhekkhklnellvkeirk..alsevdlilfvvdsdeknke..dellleklqklkapvvlalnkl 117
                  lG++  GKS   N++l+ +  i  + +     + + + +e + + +  +DtPGl  +  ++ e+++  +r+   ++++   l+v+++d+   +  +++ l  +q l  p++l ++ +
  MMETSP1174-20130828|20562_1  14 LGKTGRGKSATGNSILNREAFISRRGPTAVTAKCQVEEVEIKGRlVRIVDTPGLFDPDVSNAEVIQELARSltLVGDIHAALLVLNGDDVRFTaeEKFALRLIQLLFGPRILQVMTI 130
                  8****************99888766655555566666666666645569****************99998743479***********987644448899999999999999888766 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.7e-08     4e-05      42     167 ..      12     139 ..       6     153 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 7.7e-08
    TIGR00991  42 lvmgkggvgksstvnsiigervaavsaf..qseglrpvlvsrtragftlniidtpglieggyindqavn.iikrflldktidvllyvdrldayrvddldkqvvkaitdsfgkeiwkkslvvlthaqlsp 167
                  l++gk g gks+t nsi+  r a +s     +   +  +      g  + i+dtpgl +    n   ++ + +++ l   i   l v   d  r    +k  ++ i   fg  i +   +v+t  +  p
  MMETSP1174-20130828|20562_1  12 LLLGKTGRGKSATGNSILN-REAFISRRgpTAVTAKCQVEEVEIKGRLVRIVDTPGLFDPDVSNAEVIQeLARSLTLVGDIHAALLVLNGDDVRFTAEEKFALRLIQLLFGPRILQVMTIVFTRGDCFP 139
                  899*************996.445555541155566667777788999*****************99986255667788999999999999****************************99999876544 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.7e-07   0.00045       5     101 ..      13     112 ..      10     127 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.7e-07
    TIGR03594   5 ivGrpNVGKStLfNrlvkkrkAivedtp.gvTRDrkygeaelkgkefiliDTgGl...eeeedelekeireqaelaieeadvilfvvdareglteeDeeia 101
                  ++G++  GKS+  N ++++ + i    p  vT   + +e+e+kg+ ++++DT+Gl   + +++e+ +e+++ + + + + ++ l+v+++ +   +++e++a
  MMETSP1174-20130828|20562_1  13 LLGKTGRGKSATGNSILNREAFISRRGPtAVTAKCQVEEVEIKGRLVRIVDTPGLfdpDVSNAEVIQELAR-SLTLVGDIHAALLVLNGDDVRFTAEEKFA 112
                  67888899999999999876666655543699999999999999999999999996543333333333332.33445566666777776666555555555 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06   0.00094     118     198 ..       8      96 ..       3     119 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.8e-06
    TIGR03596 118 airalvvGiPNvGKStliNrlakkkvakvgnkp.gvTksqqw..iklske.leLlDtPGilwpkledeev....glkLaltgaikdeil 198
                  +++ l +G    GKS+  N+++++++  + + p +vT + q   ++++ + + ++DtPG++ p +++ ev    + +L+l+g+i+ ++l
  MMETSP1174-20130828|20562_1   8 PFNWLLLGKTGRGKSATGNSILNREAFISRRGPtAVTAKCQVeeVEIKGRlVRIVDTPGLFDPDVSNAEViqelARSLTLVGDIHAALL 96 
                  667777788888**************9999988579998886224554432689***********996652222667778888887754 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.6e-05    0.0084      12     107 ..      13     111 ..      10     147 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.6e-05
    TIGR03918  12 lfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGp.vvliDTaGldDegeLGe...lRvektrevlektdlallvvdaeaeleeleeel 107
                  l+G++  GKS+  N ++++++ i s    t   +  +  E+   G  v ++DT+Gl D     +   +  +++ + +  +  allv++ +    ++ee++
  MMETSP1174-20130828|20562_1  13 LLGKTGRGKSATGNSILNREAFI-SRRGPTAVTAKCQVEEVEIKGRlVRIVDTPGLFDPDVSNAeviQELARSLTLVGDIHAALLVLNGDDVRFTAEEKF 111
                  78****************99766.4443333333334444554564288*******88544333011345677778888889999999876655555554 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     7e-05     0.036     210     269 ..       9      69 ..       5     114 .. 0.78
   2 ?   -2.4   0.2      0.78     4e+02     351     384 ..     236     269 ..     209     281 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7e-05
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikG..ttRDvvEedleleGilvkllDtAGiRe 269
                  ++  ++Gkt  GKS+  N +l+++  i    +   t +  vE ++e++G lv+++Dt G+ +
  MMETSP1174-20130828|20562_1   9 FNWLLLGKTGRGKSATGNSILNREAFISRRGPTavTAKCQVE-EVEIKGRLVRIVDTPGLFD 69 
                  666789****************99766555443214455555.68**************976 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.78
    TIGR00450 351 kikelvdlltekinalyskekdeldlalisssea 384
                  k +e    l  ++  l ++ ++ ++l+   + e+
  MMETSP1174-20130828|20562_1 236 KQEEATRSLAGQVVSLKEEMTSLKQLTAQLTMEQ 269
                  3333344444444333333332233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.47
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|20560_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1201.94
//
Query:       MMETSP1174-20130828|20567_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 842.70
//
Query:       MMETSP1174-20130828|20566_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 876.26
//
Query:       MMETSP1174-20130828|20568_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 772.52
//
Query:       MMETSP1174-20130828|20573_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 700.91
//
Query:       MMETSP1174-20130828|20574_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.8   3.8      0.017   11.4   2.6    1.2  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   4.2e-06     0.017      26     161 ..     142     273 ..     128     282 .] 0.57

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.2e-06
    TIGR03490  26 ttssnskqpekkpeakpeenkPkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqa....depnnd.hadqknnnkvdfsdldklkkelsfenftlYskkdpktalsslkkd 161
                   t+   ++    p  kp+e +P + ++++       +nn++n++++ +++p   +p+ + d+s +++e  +  +   + ++++       +p+++ + +++++    f  + ++  ++     + Y +++pk a  s+ k+
  MMETSP1174-20130828|20574_1 142 STTAVMHSHTSSPSVKPKEVEPRNGRREE------GANNNNNNNNNADRDPR-IRPNVNRDASRERNEVPRLSDRATQMEDEEIVallkKKPKHVpQLQTREKYCRFFTGVSRVRMHML--LTEAYADHEPKDAQRSVEKR 273
                  34444446677777888887777777666......33344455555555554.578889999998888888877777777544320111233222555666666666666666654433..33445566666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.55
# Mc/sec: 676.74
//
Query:       MMETSP1174-20130828|20577_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1033.16
//
Query:       MMETSP1174-20130828|20580_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 522.68
//
Query:       MMETSP1174-20130828|20578_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-47  160.0   8.9    2.4e-46  156.3   6.1    1.9  1  TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
    2.3e-16   57.8   4.4      2e-15   54.7   3.0    1.9  1  TIGR02235 menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase
    0.00098   16.6   1.0      0.003   15.0   0.0    2.0  2  TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00751  menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   6.1   1.8e-49   2.4e-46       1     223 [.      20     248 ..      20     263 .] 0.89

  Alignments for each domain:
  == domain 1    score: 156.3 bits;  conditional E-value: 1.8e-49
    TIGR00751   1 rPktlPlalaaivaGtalaaWlnafdglvallalltavllqilsnyandygdavkGsdkedriGPlrgvqkgvitakelktalilsvvlsalsGlvlvalaaetladlvalialGalaivaaitytvGskPyGyi............GlGdisvlvffGllavlGtyylqahsvdsalilpavasGllasavlninnlrdiesdakagkntlavrlGevkarvyyaillavaavl 223
                  rP tl  +++++++G++l++  +a +   al   + a  +qi++n+ ndy+d v+G+d+++r+G  r   +g +t+ e+ ++  +++ l+a+ G+ l+         +++   + + +i  a+ yt+G  P Gyi            GlGd+ v+v+fG++av Gtyylq +++ + ++  a+   lla+a++++nnlrd ++d ka+k tlavr+G++ ar+ y+il+ +    
  MMETSP1174-20130828|20578_1  20 RPNTLAASFTPVLVGASLSYRDGARNFNEALAFWVFALCIQIGTNLHNDYADFVRGADTKERLGQARVTSEGWLTPYEVARGSTIALSLAAIVGVRLIHRGGY---SMLW---IVVTSIFNAVAYTGGHYPLGYIhpalaqfsigysGLGDLFVFVYFGFVAVCGTYYLQLLQLPTYVVWAALPIALLATAIIVVNNLRDRKTDVKANKRTLAVRFGATFARIEYTILVGGGFAS 248
                  9*******************9999999999999999************************************************************9987766...3444...4467999**********987654444444444449*******************************************************************************99764332 PP

>> TIGR02235  menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   3.0   1.5e-18     2e-15       1     206 [.      14     234 ..      14     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.5e-18
    TIGR02235   1 lWlkaiklplysvavlPilvgtavalaktgvvkldklvlfliaaililaWinLtnDvfDsetGiDefklhsvvnltgsrsl....vlllanliLliGlvvilalssraqitvlalvllaifLGylyqG.........PP...frLgykGLGellcllafGPlaiaaallaqsqslslillkaailvGlattliLfcshfhqvedDkaagkkspvvrlGtkra 206
                  lW +a+++   +++  P+lvg+++++  + + ++++  +f + a+ i +  nL nD  D   G D +      ++t +  l    v   + + L++  +v + l +r   ++l +v+++if   +y G         P    f +gy GLG+l  ++ fG +a+  +++ q  +l + ++ aa+ + l +t i+ +++    + D +a+k+++ vr+G+  a
  MMETSP1174-20130828|20578_1  14 LWIAAVRPNTLAASFTPVLVGASLSYRDGAR-NFNEALAFWVFALCIQIGTNLHNDYADFVRGADTKERLGQARVTSEGWLtpyeVARGSTIALSLAAIVGVRLIHRGGYSMLWIVVTSIFNAVAYTGghyplgyihPAlaqFSIGYSGLGDLFVFVYFGFVAVCGTYYLQLLQLPTYVVWAALPIALLATAIIVVNNLRDRKTDVKANKRTLAVRFGATFA 234
                  7************************998776.56666678888899*******************9988888888877654222377778999999888888888888889999999999987777773332222222133488999*************************999999999999999988999999**********************9865 PP

>> TIGR03062  pip_yhgE_Cterm: YhgE/Pip C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-06     0.003      14     115 ..      39     138 ..      29     145 .. 0.91
   2 ?   -0.1   0.1      0.09   1.2e+02      28      43 ..     190     205 ..     152     256 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-06
    TIGR03062  14 dkskvpnyGtGlAPyflslaLfvgalvlnlilkllesralaksarewrialakllvlalvavlqaiilvlvlllvlglevahplalllfailtsltfmaiiq 115
                   ++ + n+ ++lA ++++l + +g  + n   ++++   ++++  + r++ +++l+ + va + +i+l l+ ++  g++  h   + ++ i+++  f a+++
  MMETSP1174-20130828|20578_1  39 YRDGARNFNEALAFWVFALCIQIGTNLHNDYADFVRGADTKERLGQARVTSEGWLTPYEVARGSTIALSLAAIV--GVRLIHRGGYSMLWIVVTSIFNAVAY 138
                  567899********************************************************999999888777..99999999999999999999988865 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.09
    TIGR03062  28 yflslaLfvgalvlnl 43 
                  y++  aL ++ l++ +
  MMETSP1174-20130828|20578_1 190 YVVWAALPIALLATAI 205
                  4444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.55
# Mc/sec: 631.15
//
Query:       MMETSP1174-20130828|20581_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.9   0.0      0.016   13.3   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.8e-06     0.016      18      31 ..       8      21 ..       2      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.8e-06
    TIGR01068 18 lvDfwAeWCgpCkm 31
                 +vDf  +WC pC +
  MMETSP1174-20130828|20581_1  8 VVDFLVKWCIPCST 21
                 8***********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 443.63
//
Query:       MMETSP1174-20130828|20584_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20586_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 466.09
//
Query:       MMETSP1174-20130828|20585_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-102  340.4   7.5     3e-102  340.2   5.2    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
    5.1e-67  224.5   6.3    5.8e-67  224.3   4.4    1.0  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
      6e-57  191.2  11.1    1.5e-56  189.8   7.7    1.6  1  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    6.8e-38  128.6   9.7    2.4e-33  113.6   3.6    3.0  2  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
    1.2e-07   28.6   1.5     0.0019   14.8   0.2    2.4  2  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.2   5.2  3.7e-105    3e-102      80     385 .]       2     307 ..       1     307 [. 0.98

  Alignments for each domain:
  == domain 1    score: 340.2 bits;  conditional E-value: 3.7e-105
    TIGR01930  80 nrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl...vktklsmgetAenlakkygisReeqDeyalrShqkaakAieegkfkdeivpvevkgk...kkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdpeemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                  n+vCaSg+++++l+aq+i+ G+ dvvvaGG+EsmS++p++++a+  r++++lg+++  d +++d+   v+++ +mg++Ae +a+k+g+s+e qD++a++S+q+a++Ai++g +k+eivpvev ++   +++vs De++   +++ek+ +L++afk+ +g tvtA+N+s+lnDGAaa +lms ++a+elgl+plari +++ a  +p e++++p+ A+++aL+ ag+ +sdid+ EinEAF+++v+a+++ lg ld++ vN +GGA++lGHP+G+sG ri+ +ll+ L+ +++++G+a++C+ggG ++Av+le
  MMETSP1174-20130828|20585_1   2 NKVCASGMKSLMLGAQSIMIGQRDVVVAGGMESMSNIPHYMPAA--RAGVRLGSSSIVDGIVHDGlwdVYNDQHMGMCAEACADKFGFSKEAQDAFAMESYQRAQSAIKSGVLKSEIVPVEVAQHkkpAVMVSVDEEPS-AVKIEKIPGLRAAFKK-DG-TVTAANASSLNDGAAACVLMSAAKAQELGLKPLARISGFGDAEQSPVEFTTAPALAVPRALEDAGVIASDIDYHEINEAFSVVVMANMELLG-LDHSTVNLHGGAVSLGHPIGMSGMRIIGSLLNVLQTNDATLGVASICNGGGGASAVVLE 307
                  89****************************************98..89********************99****************************************************99899888889999887.9*************95.9*.6*******************************************************************************************.89*******************************************************97 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.3   4.4     7e-70   5.8e-67      86     400 .]       2     309 ..       1     309 [. 0.97

  Alignments for each domain:
  == domain 1    score: 224.3 bits;  conditional E-value: 7e-70
    TIGR02430  86 nrlcgsgldalglaaraikaGeadlviaGGvesmsrapfvlGkadsafsrsakledttiGwrfvnpklkalyGvdsmpetaenvaeefgvsredqdafalrsqqrtaaaqakGffaeeivpveikqkkGeetvvdkdehlraettlealaklkavvredgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGveprvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelgladddarvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvierv 400
                  n++c+sg+++l l+a++i  G+ d+v+aGG+esms  p+ +  a +      +l  ++i    v   l ++y  + m+  ae  a++fg s+e qdafa+ s qr++ a ++G++++eivpve++q+k  +++v+ de++     +e++  l+a +++dgtvta nas +ndGaaa +l s+  +++ gl+p ari ++  a  +p  +  +p+ av ++l+ ag+  +d+d  e+neaf+   +a +  lgl  d++ vn  GGa++lGhp+G+sG r++ ++l+ l++++   ++a++c G G   a+v+er+
  MMETSP1174-20130828|20585_1   2 NKVCASGMKSLMLGAQSIMIGQRDVVVAGGMESMSNIPHYMPAARAGV----RLGSSSIVDGIVHDGLWDVYNDQHMGMCAEACADKFGFSKEAQDAFAMESYQRAQSAIKSGVLKSEIVPVEVAQHKKPAVMVSVDEEPS-AVKIEKIPGLRAAFKKDGTVTAANASSLNDGAAACVLMSAAKAQELGLKPLARISGFGDAEQSPVEFTTAPALAVPRALEDAGVIASDIDYHEINEAFSVVVMANMELLGL--DHSTVNLHGGAVSLGHPIGMSGMRIIGSLLNVLQTNDATLGVASICNGGGGASAVVLERL 309
                  99***************************************9887654....5666777777899***************************************************************************9.799********************************************************************************************************9999..7899******************************************************96 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8   7.7   1.9e-59   1.5e-56      86     384 ..       2     308 ..       1     309 [. 0.87

  Alignments for each domain:
  == domain 1    score: 189.8 bits;  conditional E-value: 1.9e-59
    TIGR02445  86 nrlcgssmqalhdaaraimtgdaevcliggvehmghvs..m...shgvdfhp........glskhvakaagmmgltaemlgklhgisreqqdafaarsharahaatlegkfkneiiptegydadgvlkvldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdpsimgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlglldkldekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfer 384
                  n++c s m++l  +a+ im g+ +v++ gg+e m  ++  m     gv            +           mg+ ae  +   g s+e qdafa+ s++ra +a ++g +k ei+p+e  + +    ++  de       +e +  lr af+ k+gtvta  +s+l dga+a ++ms+ +aqelg+kp+ari ++  a   p  +   p  a  +al  ag+ +sdid+ e+neaf+     v+ +++ll   +  vnl+gga++lghp+g sg ri ++lln+++++da+ g+a++c g g   a v+er
  MMETSP1174-20130828|20585_1   2 NKVCASGMKSLMLGAQSIMIGQRDVVVAGGMESMSNIPhyMpaaRAGVRLGSssivdgivHDGLWDVYNDQHMGMCAEACADKFGFSKEAQDAFAMESYQRAQSAIKSGVLKSEIVPVEVAQHKKPAVMVSVDEEP-SAVKIEKIPGLRAAFK-KDGTVTAANASSLNDGAAACVLMSAAKAQELGLKPLARISGFGDAEQSPVEFTTAPALAVPRALEDAGVIASDIDYHEINEAFSVV---VMANMELLGLDHSTVNLHGGAVSLGHPIGMSGMRIIGSLLNVLQTNDATLGVASICNGGGGASAVVLER 308
                  899********************************9983322223465543310000000222233445678**********************************************988887777777888853.45789**********7.79*********************************************************************************866...55666777777889*****************************************************99 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   3.5e-05     0.029      91     127 ..       3      39 ..       1      52 [. 0.92
   2 !  113.6   3.6   2.9e-36   2.4e-33     177     428 ..      73     307 ..      66     308 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
    TIGR02446  91 racatsfqsavnvaesimagaieigiaggadsssvlp 127
                  + ca+ ++s +  a+sim g+ ++ +agg +s s +p
  MMETSP1174-20130828|20585_1   3 KVCASGMKSLMLGAQSIMIGQRDVVVAGGMESMSNIP 39 
                  78*******************************9998 PP

  == domain 2    score: 113.6 bits;  conditional E-value: 2.9e-36
    TIGR02446 177 smgqtaeqmaktygitraeqdalahrshtlaaqawadgklkeevmtafvepykkfiaednnir..enssladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidveqdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkllasekfaeeklgrakaigeidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamile 428
                  +mg  ae  a  +g +++ qda+a  s+++a+ a ++g lk e++   v  +kk+ +           ++++   lr af +k g+vtaan++ l dgaaa +lms ++a+elgl++l  i ++   a +   ++   p+ a p+al+ ag+  sd+   ++ eaf+   +an++ll+                 +d s  n+ gg+++ ghp+  +g r+i   l+ l+     lg+a+ c  gg  +a++le
  MMETSP1174-20130828|20585_1  73 HMGMCAEACADKFGFSKEAQDAFAMESYQRAQSAIKSGVLKSEIVPVEVAQHKKPAVMVSVDEepSAVKIEKIPGLRAAF-KKDGTVTAANASSLNDGAAACVLMSAAKAQELGLKPLARISGFGD-AEQSPVEFTTAPALAVPRALEDAGVIASDIDYHEINEAFSVVVMANMELLG-----------------LDHSTVNLHGGAVSLGHPIGMSGMRIIGSLLNVLQTNDATLGVASICNGGGGASAVVLE 307
                  79***************************************************9866554444004556889999*****.678**************************************9974.5667788999*************************************9986.................688999*********************************************99999998 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.1e-05    0.0091     160     191 ..       4      35 ..       2      41 .. 0.93
   2 !   14.8   0.2   2.3e-06    0.0019     229     298 ..     166     230 ..     152     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.1e-05
    TIGR03150 160 ACatgthaigeaarlikegeadvmiagGaeaa 191
                   Ca+g++++  +a+ i  g+ dv++agG e++
  MMETSP1174-20130828|20585_1   4 VCASGMKSLMLGAQSIMIGQRDVVVAGGMESM 35 
                  5****************************986 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.3e-06
    TIGR03150 229 lgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyi 298
                  l +Ga+  vl +  +A++ g k +a + G+g +       +p e  ++ a a+ +al+dag+ ++++dy 
  MMETSP1174-20130828|20585_1 166 LNDGAAACVLMSAAKAQELGLKPLARISGFGDAE-----QSPVEFTTAPALAVPRALEDAGVIASDIDYH 230
                  679***************************9555.....47888899999*******************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|20591_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1174-20130828|20594_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.3   0.1    1.4e-06   25.3   0.1    1.0  1  TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT
  ------ inclusion threshold ------
      0.012   13.8   0.5       0.36    9.0   0.1    2.0  2  TIGR01050 rpsS_bact: ribosomal protein S19


Domain annotation for each model (and alignments):
>> TIGR02946  acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1     7e-10   1.4e-06     373     434 ..      21      79 ..       4      80 .] 0.83

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 7e-10
    TIGR02946 373 lfnlvisNVPgpreplylaGakldelyplsplldgqglnitvlSyngeltfGlladrdavpd 434
                   +++v sNVPgp+e +  aG+ + +l    ++++++  ++ vlSy+g+++  ++ d++ +++
  MMETSP1174-20130828|20594_1  21 RHSVVFSNVPGPSEVVMAAGKTVSSL---QMIFPNLISQVGVLSYAGKVHANIVVDPEIISK 79 
                  468*****************988765...5666779999******************99886 PP

>> TIGR01050  rpsS_bact: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0096        20      28      44 ..      13      29 ..       7      37 .. 0.82
   2 ?    9.0   0.1   0.00017      0.36      32      67 ..      41      77 ..      33      79 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0096
    TIGR01050 28 kkviktwsRrstilPel 44
                 kk++ ++sR s+++ ++
  MMETSP1174-20130828|20594_1 13 KKTFEIFSRHSVVFSNV 29
                 78899*******98765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00017
    TIGR01050 32 ktwsRrstilPelvglt.ievynGkkfipvyiteemv 67
                 kt s   +i+P+l+++  +  y Gk + ++ +  e++
  MMETSP1174-20130828|20594_1 41 KTVSSLQMIFPNLISQVgVLSYAGKVHANIVVDPEII 77
                 8999999*******9762667*********9998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|20595_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|20592_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|20599_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 1458.65
//
Query:       MMETSP1174-20130828|20601_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-58  195.5   0.0      5e-39  132.0   0.0    2.1  2  TIGR01430 aden_deam: adenosine deaminase
    6.1e-08   29.7   0.0    9.5e-05   19.2   0.0    2.2  2  TIGR01431 adm_rel: adenosine deaminase-related growth factor


Domain annotation for each model (and alignments):
>> TIGR01430  aden_deam: adenosine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   2.4e-42     5e-39      48     249 ..      45     278 ..      37     283 .. 0.90
   2 !   61.5   0.0   7.1e-21   1.4e-17     251     323 .]     313     385 ..     301     385 .. 0.95

  Alignments for each domain:
  == domain 1    score: 132.0 bits;  conditional E-value: 2.4e-42
    TIGR01430  48 dlqdFlakydagvevla.teddikrlayeyvekaakdgvvyaEvrfdPqlhtekgis......................leevveallegldeaerdfgiksrlilcllRhvqpeaaeetvelakk.ykeq..tivgigLagdEkkep.......pekfvrafaearelglkltvHagelggaesvkealddlkaeRigHGvraledpellkrlaeekitlevCplSnlklgvvk 249
                  +l++ ++ ++  +++++ +   +++la  +ve+++++ vvy Evr++P+l+ ++g+                       + +vvea+ +gl++++ +  + ++ ilc++    p++a+e+v+ a+   ++    +vg+++a  E+++         + +  a ++a+elgl++t+Hage + a+ +++a+d  +a+R+gHG+r+led  l++ ++e+++++e+Cp+S++++g++ 
  MMETSP1174-20130828|20601_1  45 SLHEMIKCFELFLPAVRgDLVLLEELAFRFVEQQVAQDVVYTEVRYNPHLLSSEGSIdvsatsasgenepapgstekvgPVAVVEAVTRGLRRGSLQNDVIVNQILCCIQ-WRPDWAREVVDIAAArSQDWpcAVVGVDIAAGEEHFDgagypalHQPHLTAMQRAKELGLNVTLHAGEDTRAANIRAAVDAYGASRVGHGYRLLEDAVLTEEMVERGVHFECCPTSSFETGGWT 278
                  5555566666666666655566789****************************9988899*************************************************9.9**********988734442347*******999999878887777789999**********************************************************************997 PP

  == domain 2    score: 61.5 bits;  conditional E-value: 7.1e-21
    TIGR01430 251 laehplkrlleagvkvtlnsDdpavfgstlkeeYeiaakdaalteeelkqlaknalegaflsddekkellakl 323
                   ++hp+++++eagv+v +nsDdp vf ++l+ee+ei+ ++++lte +lk+++  a+ +af++++ k +l +++
  MMETSP1174-20130828|20601_1 313 WTQHPMRAMIEAGVRVGINSDDPQVFATSLNEEFEIVLTKMGLTEGQLKEATEAAIDAAFIDEASKSALRQRI 385
                  589****************************************************************998876 PP

>> TIGR01431  adm_rel: adenosine deaminase-related growth factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.6e-08   9.5e-05     274     381 ..     162     270 ..     153     272 .. 0.75
   2 !    8.3   0.0   9.3e-05      0.19     390     472 ..     312     393 ..     303     399 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.6e-08
    TIGR01431 274 eeikvavelkkkyPdvvvGfdlvGqedk....dlsLkdyldaLlels..dkeklpyffhagetnwqgtevdenlvdallLnttriGhGfaLvkhPlvlklvkereiavevnPis 381
                  e + +a    + +P  vvG d+   e++    +++ + ++++L  +   ++  l+  +hage       + +  vda   ++ r+GhG+ L    ++++ + er++  e +P s
  MMETSP1174-20130828|20601_1 162 EVVDIAAARSQDWPCAVVGVDIAAGEEHfdgaGYPAL-HQPHLTAMQraKELGLNVTLHAGEDTRAAN-I-RAAVDA--YGASRVGHGYRLLEDAVLTEEMVERGVHFECCPTS 270
                  5667777778899999*****9755543221133332.345555554337888999*****9665544.3.566788..69*******************************98 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 9.3e-05
    TIGR01431 390 dlrnhpvailladnyPvvissddPalweakgLsydfyvallglasakadlrlLkqLalnsikysalseeekktakakwkkkWd 472
                  d   hp+  ++  +  v i sddP ++ a++L  +f ++l +++ ++ +l+   + a+++      s++  +     ++ +Wd
  MMETSP1174-20130828|20601_1 312 DWTQHPMRAMIEAGVRVGINSDDPQVF-ATSLNEEFEIVLTKMGLTEGQLKEATEAAIDAAFIDEASKSALRQRISALELRWD 393
                  7889**********************9.689*********9999999888776666666554444444444444555667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.57
# Mc/sec: 914.82
//
Query:       MMETSP1174-20130828|20603_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 322.21
//
Query:       MMETSP1174-20130828|20602_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 871.13
//
Query:       MMETSP1174-20130828|20608_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1241.41
//
Query:       MMETSP1174-20130828|20616_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 848.50
//
Query:       MMETSP1174-20130828|20614_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.25s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1970.41
//
Query:       MMETSP1174-20130828|20617_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|20615_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1458.83
//
Query:       MMETSP1174-20130828|20613_1  [L=1048]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   97.9   2.8    3.2e-13   47.1   1.2    3.0  2  TIGR03389 laccase: laccase
    1.9e-27   94.0   6.7    1.4e-12   44.9   0.1    3.8  3  TIGR03388 ascorbase: L-ascorbate oxidase
    1.3e-17   61.3   7.3    6.3e-09   32.6   0.1    4.1  4  TIGR01480 copper_res_A: copper-resistance protein, CopA family
    5.2e-16   56.0   0.3    4.3e-12   43.1   0.0    2.3  2  TIGR03390 ascorbOXfungal: L-ascorbate oxidase
      2e-10   37.7   8.6    3.1e-10   37.1   5.9    1.2  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR03389  laccase: laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   4.3e-16   3.6e-13     102     299 ..      40     253 ..      33     284 .. 0.74
   2 !   47.1   1.2   3.9e-16   3.2e-13     436     539 .]     384     507 ..     361     507 .. 0.64

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 4.3e-16
    TIGR03389 102 fwhahiswlrat...vyGalvilPkkgss..yPfpkpdkevalilgewwkadveavinqalktGaaPnv...sdaytinGkp..Galyncsk....kdtfklkvekgktyllriinaalneelffaianhkltvvevdatyvkpfktkvlliaPGqttdvllkadksp..kkyliaarayad...aviavdnttavaileykktsskaklslpalPa 299
                  ++hah     +    + Ga++ilP+ g+    P+   + e al+l + w ++  +    a + G++P     s+a+ +   p   al n        +  ++ +++g+t +lr++n      +  ++ +hk+tv+++d++ + p+  + +++  G+  dvl++ad s+  ++y+i a++ +    a++++d++ +++il+y+++  +   s  +lP 
  MMETSP1174-20130828|20613_1  40 WYHAHGGLSSSGvrgIAGAFIILPALGKEvdAPYHANYTEEALVLVNDWAHESPSDHYWASRGGLHPPTaqsSNAHNVAIVPwtSALINGHGgiygGEYSSVYITAGETMRLRLVNMGEIFAMRISVDDHKMTVISTDGVDTEPVVVDSVILHLGERYDVLITADISSttRNYWIRANSLEGdsgAQVKFDHK-VLGILQYRGAAYTD--SYGVLPS 253
                  9999976655541116789*****98865116999999999999998888888888889999999986422277776544431133333222111134457999************9877788899***************************************9854599***999986412256667765.79*****9865443..3334444 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 3.9e-16
    TIGR03389 436 aseshplhlhGynffvvG....kGfGn............fd.pkkdpakfn.lvdP..verntvgvPtaGwvairfradnPGvwllhchlevhltwGlkmaflvenGkep..nekllpPpkdlPkc 539
                  +  shp+hlhGy+f v        f              fd p + ++  n + d   v ++tv +P++G+ ++rf adnPG wl hch + h + G+ +  ++++G +   +    +Pp ++P c
  MMETSP1174-20130828|20613_1 384 SRTSHPIHLHGYKFVVAAiheaDTFSScsitecpketdwFDwPANKSKVQNtIGDGsyVVKDTVVLPAGGYLVLRFLADNPGHWLAHCHTDYHFADGMGL--IIREGIGSdvSAYNYAPPGNFPPC 507
                  3579**********997532223344311111111111133322222222313343235689999********************************876..556655540055567899999998 PP

>> TIGR03388  ascorbase: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00014      0.12      93     148 ..      31      94 ..      20     101 .. 0.74
   2 !   44.9   0.1   1.7e-15   1.4e-12     207     305 ..     143     247 ..     133     269 .. 0.78
   3 !   38.9   1.5   1.1e-13   9.3e-11     443     526 ..     386     489 ..     364     495 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00014
    TIGR03388  93 vdkpGt..ylyhghyGmqrsa..GlyGslivevadgek..epfk..ydgefnlllsdwyhksiy 148
                  vd +G   + yh+h G+  s   G+ G++i+ +a g++   p++  y +e  +l++dw h+s +
  MMETSP1174-20130828|20613_1  31 VDPSGKdfHWYHAHGGLSSSGvrGIAGAFIILPALGKEvdAPYHanYTEEALVLVNDWAHESPS 94 
                  6666643378*******987444999999999886654114554338889999********966 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 1.7e-15
    TIGR03388 207 vvpnktyrlriasltalaalnlaieghklvvveadGnyvepfavkdldiysGetysvllktd.qdpsrnywisvgvrgrk.....pktpqalavlnylpnsaskl 305
                  ++ + t rlr+  +  + a+ + +++hk++v+ +dG   ep +v+ + ++ Ge y vl+++d   ++rnywi  +    +     +   + l++l+y+++  + +
  MMETSP1174-20130828|20613_1 143 ITAGETMRLRLVNMGEIFAMRISVDDHKMTVISTDGVDTEPVVVDSVILHLGERYDVLITADiSSTTRNYWIRANSLEGDsgaqvKFDHKVLGILQYRGAAYTDS 247
                  677899*******************************************************934678*****887543220100123456788888887655544 PP

  == domain 3    score: 38.9 bits;  conditional E-value: 1.1e-13
    TIGR03388 443 eihpwhlhGhdfwvlGyGeG.kfke........evd.....ekkynlknp......ilrntvvvfpyGwtalrfradnpGvwafhchieshlfmGmGvvfaegv 526
                    hp hlhG+ f v    e   f++        e+d     ++k  ++n+      ++++tvv+   G+  lrf adnpG w  hch + h+  GmG++  eg+
  MMETSP1174-20130828|20613_1 386 TSHPIHLHGYKFVVAAIHEAdTFSScsitecpkETDwfdwpANKSKVQNTigdgsyVVKDTVVLPAGGYLVLRFLADNPGHWLAHCHTDYHFADGMGLIIREGI 489
                  45777777777777654433134321111111111211111111122222111111578888888899**********************************98 PP

>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2   6.4e-05     0.052     140     188 ..      39      95 ..      30     100 .. 0.75
   2 !   32.6   0.1   7.6e-12   6.3e-09     250     324 ..     126     203 ..     114     221 .. 0.86
   3 !    4.3   0.0    0.0029       2.4     507     535 ..     368     396 ..     355     410 .. 0.82
   4 !   15.7   0.0     1e-06   0.00085     547     586 ..     442     481 ..     430     486 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.4e-05
    TIGR01480 140 ywyhshsafqe..qaGlyGalvidPlee....dpvr..adreyvvllsdwtdldPaa 188
                  +wyh+h ++      G+ Ga++i P+ +     p++  +  e +vl+ dw+++ P +
  MMETSP1174-20130828|20613_1  39 HWYHAHGGLSSsgVRGIAGAFIILPALGkevdAPYHanYTEEALVLVNDWAHESPSD 95 
                  7*******9862258**********9662222355411567889*********9975 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 7.6e-12
    TIGR01480 250 llnGttp..agnwtGlf.rpGekvrlrfingsamtyfdvriPGlklkvvavdGqyvePvsvdefrialaetydvlveP 324
                  l+nG++   +g+++ ++  +Ge +rlr++n +      + +   k++v+++dG   ePv vd + + l+e ydvl+  
  MMETSP1174-20130828|20613_1 126 LINGHGGiyGGEYSSVYiTAGETMRLRLVNMGEIFAMRISVDDHKMTVISTDGVDTEPVVVDSVILHLGERYDVLITA 203
                  78888753357888776378************98888888899********************************975 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0029
    TIGR01480 507 lrlkygerlrvvlvndtmmahPihlhGlw 535
                  l +  g +++++   ++  +hPihlhG+ 
  MMETSP1174-20130828|20613_1 368 LDVASGSKVQLIWNHESRTSHPIHLHGYK 396
                  5566788999999999***********75 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 1e-06
    TIGR01480 547 vrkhtvdvaPgskvsfrvradalGrwayhchlllhmeaGm 586
                  v k tv ++ g+    r  ad++G+w  hch  +h   Gm
  MMETSP1174-20130828|20613_1 442 VVKDTVVLPAGGYLVLRFLADNPGHWLAHCHTDYHFADGM 481
                  6799**********************************99 PP

>> TIGR03390  ascorbOXfungal: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   5.2e-15   4.3e-12     108     333 ..      39     274 ..      25     291 .. 0.71
   2 !   10.5   0.1   4.1e-05     0.034     483     528 ..     438     484 ..     371     493 .. 0.66

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 5.2e-15
    TIGR03390 108 yfyhshvglqavt...aaGaliveda....ekppyk..ydderilllsdffskk..dee.ieqGllstpfkwsGeteavllnGksvalsqeadvkpsgecklevidvepGktyrlrfigatalslvslgiedhenlevieadGsytkplkidklqlasGqrysvllkaktedelkaldkrqyflqfetrdrPe...v...lrgyavlkyrsdkasklpsvpetpvlelptevadwleyelepls 333
                  ++yh+h gl +      aGa+i+  a      +py+  y +e  +l++d+ +++  d+    +G l  p   s +++ v +   + al + +   +    + + + + +G t rlr++    +  ++++++dh+ ++vi +dG  t+p+ +d + l  G ry+vl++a  ++       r+y+++ ++++  +   v    +  ++l+yr  + ++   v +++  ++   v + ++y++ p s
  MMETSP1174-20130828|20613_1  39 HWYHAHGGLSSSGvrgIAGAFIILPAlgkeVDAPYHanYTEEALVLVNDWAHESpsDHYwASRGGLHPPTAQSSNAHNVAIVPWTSALINGH--GGIYGGEYSSVYITAGETMRLRLVNMGEIFAMRISVDDHK-MTVISTDGVDTEPVVVDSVILHLGERYDVLITADISST-----TRNYWIRANSLEGDSgaqVkfdHKVLGILQYRGAAYTDSYGVLPSTSATVNPVVLNCFDYDIGPSS 274
                  45899988887541114678777544111135677444889999999998765411443234666777777777777766654444333222..2333456778999***************************.*******************************9976554.....589****99997654111221235679999*99888888777667777889999999999998875 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 4.1e-05
    TIGR03390 483 lyryaakvepgapa.GwrawrirvtnpGvwmvhchvlqhmvmGmetv 528
                     y +k +   pa G+   r+   npG w+ hch+  h   Gm  +
  MMETSP1174-20130828|20613_1 438 DGSYVVKDTVVLPAgGYLVLRFLADNPGHWLAHCHTDYHFADGMGLI 484
                  4457766555555526889999999***************9999765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   5.9   3.7e-13   3.1e-10     450     611 ..     746     920 ..     726     924 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 3.7e-13
    TIGR00955 450 ilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllsca..festslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie.....lleantteecpssg.eeiLeels.........feaadlaldllilvvlilvfrllaylalri 611
                   +p+lf+ i+  +++++ +a k++++ ++++l+++v  s+g ll+ a  +++ sla+ +a +++  +++ gGf+    +vP +++++s lS +rY++ a++  q++  ++          a    +++s +     + l+         +e+  +  d+++lvvli++fr++ +l+  i
  MMETSP1174-20130828|20613_1 746 PFPMLFAFIIDTLTSITDDAGKVMLIGFILILTQQVFESLGRLLAEAagMSNLSLAVGFASIFSQSLVIAGGFYR---TVPKWLEFVSVLSAIRYSFSAIIKIQFTAANSYWcmvgqS-MAWRGYTWCSYElAGAVQDLKfrglnvidsLENPTIDSDVIMLVVLIISFRIACLLVAYI 920
                  579****************************************987633689999999****************5...79**************************999987544321.12222345555557777777766666666666667799**************98887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1048 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.18s 00:00:00.92 Elapsed: 00:00:00.59
# Mc/sec: 2344.48
//
Query:       MMETSP1174-20130828|20618_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1174-20130828|20622_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1174-20130828|20623_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 355.64
//
Query:       MMETSP1174-20130828|20620_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.31
# Mc/sec: 2035.19
//
Query:       MMETSP1174-20130828|20625_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.4   0.1      0.026   12.6   0.0    1.4  1  TIGR02331 rib_alpha: Rib/alpha/Esp surface antigen repeat


Domain annotation for each model (and alignments):
>> TIGR02331  rib_alpha: Rib/alpha/Esp surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.3e-06     0.026      21      59 ..     111     148 ..      87     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.3e-06
    TIGR02331  21 dlPdgttyewktvnkvdtntpGdkeavvvVTyPDgtkde 59 
                   lP+   ++  + n  d+++  d +   vVT PDg+k+e
  MMETSP1174-20130828|20625_1 111 SLPSLDSVSEGV-NMLDIAVGYDVNEQFVVTLPDGSKTE 148
                  566655555555.899*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 956.92
//
Query:       MMETSP1174-20130828|20627_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 564.62
//
Query:       MMETSP1174-20130828|20628_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|20633_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1174-20130828|20634_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|20632_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|20636_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|20638_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|20639_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1174-20130828|20635_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-08   30.3   0.0    8.6e-08   29.8   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.4e-05   19.7   0.0    6.9e-05   18.7   0.0    1.4  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00031   17.3   0.0    0.00059   16.4   0.0    1.3  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0016   16.0   0.0     0.0056   14.2   0.0    1.8  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   8.3e-11   8.6e-08      54     183 ..      33     174 ..      25     213 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 8.3e-11
    TIGR02521  54 lekAleldpkdadanlalAlyyqqlg........elekAeesfrkAltl..kpn.ngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpk.YeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkg 183
                  l kA+++dp++++ +l+lAl++q+           +e+  ++f++A +l  +p+ n  ++   G+ L  + +  +A + f+  + d++  e++a++    + ++ + g+ ++ ek  +ra+ idp+++++ l l+ l  ++ 
  MMETSP1174-20130828|20635_1  33 LRKAIQADPENSEHHLMLALILQSFDikrhtggsLHEEILQAFETAARLgvSPEqNLLLHMRLGVHLTTMSRPVQALEAFDVVLLDKTaNEHRADVHFYRAQTLTSMGNIDESEKEYSRAIGIDPSNSKAWLGLVVLRRDTE 174
                  89*********************98777777777788999******8863356514556789*********************999886899******************************************98776655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.7e-08   6.9e-05      43     170 ..      31     171 ..      15     186 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.7e-08
    TIGR02917  43 IeLKNaLqkdpndaeaRflLgkiyle......q.Gdaa.aAekeLrkAlslgyskeqvlplLara...yllqgkfqkvldelekk..sslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlal 170
                  + L  a+q+dp++ e    L+ i+++      + G++  +  + ++ A+ lg+s+eq l+l  r+   +  +  + ++l+ +  +  +  ++e +a ++ +r+++    g+ +e++k+++ A  i+p++++a lgl +l  
  MMETSP1174-20130828|20635_1  31 VGLRKAIQADPENSEHHLMLALILQSfdikrhTgGSLHeEILQAFETAARLGVSPEQNLLLHMRLgvhLTTMSRPVQALEAFDVVllDKTANEHRADVHFYRAQTLTSMGNIDESEKEYSRAIGIDPSNSKAWLGLVVLRR 171
                  67888999999999999999988875333332314433133467899999999999988776655111556666777777775541133468899***************************************9987765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.8e-07   0.00059     379     443 ..     103     170 ..      68     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.8e-07
    TIGR00990 379 gdsdkaeedfdkal.kkdsed..sdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlq 443
                  + + +a e fd  l +k +++  +d++++raq     g+ +e++k+y ++i +dp +  +++ l vl+
  MMETSP1174-20130828|20635_1 103 SRPVQALEAFDVVLlDKTANEhrADVHFYRAQTLTSMGNIDESEKEYSRAIGIDPSNSKAWLGLVVLR 170
                  567788899998763444443238*********************************99998888876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0     0.006       6.1      67     113 ..      67     116 ..      34     124 .. 0.68
   2 !   14.2   0.0   5.4e-06    0.0056      55     120 ..      92     160 ..      83     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.006
    TIGR02552  67 eyeeAiaaYalaaald...lddprpvyhaaecllalgekeeAlkaLklai 113
                   +ee ++a++ aa l    +++   + ++++ l+ + ++ +Al+a+++++
  MMETSP1174-20130828|20635_1  67 LHEEILQAFETAARLGvspEQNLLLHMRLGVHLTTMSRPVQALEAFDVVL 116
                  46777888888888864334566678889999999***********9987 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 5.4e-06
    TIGR02552  55 wlgLaaclqalkeyeeAiaaYalaa...aldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  +++L++ l  +++  +A++a+++ +   +++++ +++++++a+ l+ +g+  e++k   +ai i+ +++
  MMETSP1174-20130828|20635_1  92 HMRLGVHLTTMSRPVQALEAFDVVLldkTANEHRADVHFYRAQTLTSMGNIDESEKEYSRAIGIDPSNS 160
                  6899999***************98643367789999**************************9999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 949.59
//
Query:       MMETSP1174-20130828|20641_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 569.20
//
Query:       MMETSP1174-20130828|20642_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 163.85
//
Query:       MMETSP1174-20130828|20644_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-14   49.7   0.0    1.7e-14   49.5   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
      2e-08   31.7   0.0    2.2e-08   31.6   0.0    1.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.5e-06   24.1   0.0    3.8e-06   23.9   0.0    1.0  1  TIGR01288 nodI: nodulation ABC transporter NodI
    4.7e-05   20.8   0.0    4.9e-05   20.8   0.0    1.0  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    0.00044   17.6   0.0    0.00047   17.5   0.0    1.0  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    0.00063   17.1   0.0    0.00064   17.1   0.0    1.0  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
     0.0019   14.6   0.0      0.002   14.6   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.9e-17   1.7e-14     975    1038 ..       1      68 [.       1      70 [. 0.88

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 2.9e-17
    TIGR01257  975 iltgllppt..sgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkg..rsweea 1038
                   +ltgl+pp   sg+  + g di++++   r+ +g+cpqh++lf  lt  ehi+fy+ lkg   +w++a
  MMETSP1174-20130828|20644_1    1 MLTGLFPPDslSGATSIYGADIKSEMHLARNNIGICPQHDVLFDRLTTREHIMFYSMLKGgtSTWDDA 68  
                   59******733699*********************************************932346665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.7e-11   2.2e-08      38      95 ..       1      60 [.       1      68 [. 0.92

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.7e-11
    TIGR01188 38 mLttllkPd..sGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyg 95
                 mLt+l +Pd  sG + + G D+ +e + +R++ig+ pq+  + + Lt+re++++++ l g
  MMETSP1174-20130828|20644_1  1 MLTGLFPPDslSGATSIYGADIKSEMHLARNNIGICPQHDVLFDRLTTREHIMFYSMLKG 60
                 9*******94459****************************************9999877 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   6.5e-09   3.8e-06      49     102 ..       1      56 [.       1      64 [. 0.91

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 6.5e-09
    TIGR01288  49 lvlglispde..gkitvlgepvpararlarakigvvpqfdnldreftvrenllvfg 102
                  ++ gl +pd   g  ++ g+++ +++ lar +ig+ pq d l   +t+re ++ + 
  MMETSP1174-20130828|20644_1   1 MLTGLFPPDSlsGATSIYGADIKSEMHLARNNIGICPQHDVLFDRLTTREHIMFYS 56 
                  7889999995449999***********************************99986 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.3e-08   4.9e-05      48     103 ..       2      59 ..       1      67 [. 0.90

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 8.3e-08
    TIGR03522  48 ltgylkad..sGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly 103
                  ltg +++d  sG+  + g d+  +   +r+niG  P+h+ l+  l  re++ f + l 
  MMETSP1174-20130828|20644_1   2 LTGLFPPDslSGATSIYGADIKSEMHLARNNIGICPQHDVLFDRLTTREHIMFYSMLK 59 
                  7899999844599****************************************98776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     8e-07   0.00047      46     104 ..       1      61 [.       1      68 [. 0.90

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8e-07
    TIGR03864  46 lltrLyeak..egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGl 104
                  +lt+L+  +  +g  ++ G+d++++ + a +++G+  q+  l   l+ ++ + +++ L+G 
  MMETSP1174-20130828|20644_1   1 MLTGLFPPDslSGATSIYGADIKSEMHLARNNIGICPQHDVLFDRLTTREHIMFYSMLKGG 61 
                  689999665448**********************************************995 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06   0.00064      47      96 ..       3      55 ..       1      66 [. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
    TIGR00968 47 aGlekpd..sGrilleGrdv.trvkvrdreiGfvfqhyalfkhltvrdniafG 96
                 +Gl  pd  sG   + G d+ +++++ + +iG+  qh  lf  lt r+ i f 
  MMETSP1174-20130828|20644_1  3 TGLFPPDslSGATSIYGADIkSEMHLARNNIGICPQHDVLFDRLTTREHIMFY 55
                 56666663369999*****8467999999*********************996 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.4e-06     0.002      86     129 ..      16      61 ..       6      70 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.4e-06
    TIGR00955  86 llnGekveake..mraisayvqqddlfiptltvrehLmfsahlrlk 129
                   + G  +++++   r++ +   q+d+++  lt+reh+mf ++l+  
  MMETSP1174-20130828|20644_1  16 SIYGADIKSEMhlARNNIGICPQHDVLFDRLTTREHIMFYSMLKGG 61 
                  5666666544311466778889*********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 212.98
//
Query:       MMETSP1174-20130828|20645_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 466.09
//
Query:       MMETSP1174-20130828|20647_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|20643_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1312.76
//
Query:       MMETSP1174-20130828|20648_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   18.6   0.0    0.00025   18.5   0.0    1.1  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
     0.0003   18.2   0.0    0.00031   18.2   0.0    1.1  1  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
     0.0019   16.1   0.0     0.0023   15.9   0.0    1.2  1  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
     0.0055   14.7   0.1     0.0069   14.3   0.1    1.2  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
     0.0058   13.7   0.1       0.02   12.0   0.1    1.3  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
  ------ inclusion threshold ------
      0.013   12.0   0.1      0.015   11.8   0.0    1.0  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
      0.016   11.9   0.0      0.017   11.9   0.0    1.1  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
      0.018   12.3   0.1       0.02   12.2   0.1    1.1  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
       0.02   12.4   0.1      0.021   12.4   0.0    1.1  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma


Domain annotation for each model (and alignments):
>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.4e-07   0.00025      28      61 ..      34      65 ..      23      73 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.4e-07
    TIGR01971 28 ryrgrivlkrdpGeekCiaCelCakvCpaeaikv 61
                  y  +  l+    e +C++C lCa v p+ a  +
  MMETSP1174-20130828|20648_1 34 AYTNTLSLTY-VDEANCVGCGLCASVAPN-AFMM 65
                 5666666663.57999***********95.4444 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.8e-07   0.00031     103     126 ..      37      60 ..      11      65 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.8e-07
    TIGR01944 103 kekkvalideeeCiGCtkCiqaCP 126
                  ++  ++++de++C+GC  C+++ P
  MMETSP1174-20130828|20648_1  37 NTLSLTYVDEANCVGCGLCASVAP 60 
                  667899***************998 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.1e-06    0.0023      15      84 ..      41      61 ..      21      69 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.1e-06
    TIGR02936 15 vesideekCigCgrCfkvCgrdvlelkglneegelveleeddeeiekkvmvlaneenCiGCeaCarvCpk 84
                 ++ +de++C+gCg C                                                 a v p+
  MMETSP1174-20130828|20648_1 41 LTYVDEANCVGCGLC-------------------------------------------------ASVAPN 61
                 344555555555555.................................................555443 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.5e-05    0.0069      50      71 ..      42      62 ..      30      68 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.5e-05
    TIGR02179 50 veidYdyCkGCgiCaeeCpvka 71
                 + +d   C GCg+Ca++ p  a
  MMETSP1174-20130828|20648_1 42 TYVDEANCVGCGLCASVAPN-A 62
                 5678889********99885.4 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   4.3e-05      0.02     171     194 ..      41      64 ..      31      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-05
    TIGR02700 171 vveirllkclGcGkckevcpynai 194
                   + ++  +c+GcG c+ v p+  +
  MMETSP1174-20130828|20648_1  41 LTYVDEANCVGCGLCASVAPNAFM 64 
                  56788899***********98655 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05     0.015     137     156 ..      42      61 ..      32      68 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-05
    TIGR04105 137 ayidkekCieCGkCkkaCpY 156
                  +y+d++ C+ CG C+++ p 
  MMETSP1174-20130828|20648_1  42 TYVDEANCVGCGLCASVAPN 61 
                  67777777777777777773 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05     0.017      43      69 ..      40      66 ..      20      69 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.6e-05
    TIGR02512 43 leklldeseCisCGqCvlvCpvgaite 69
                   + +de++C++CG C++v p + ++e
  MMETSP1174-20130828|20648_1 40 SLTYVDEANCVGCGLCASVAPNAFMME 66
                 44678999***********99876665 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.4e-05      0.02     138     163 ..      45      70 ..      28      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.4e-05
    TIGR00384 138 elseCieCglCyssCpakklneeflG 163
                  +  +C+ CglC s+ p++ + ee+ G
  MMETSP1174-20130828|20648_1  45 DEANCVGCGLCASVAPNAFMMEEYGG 70 
                  5579*******************987 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.5e-05     0.021     154     190 ..      27      62 ..      16      73 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.5e-05
    TIGR03294 154 laeegseacGcdlltkvvnkslcmGcGtcaaacptra 190
                  l ++g  a    l    v+++ c+GcG ca   p  a
  MMETSP1174-20130828|20648_1  27 LMDNGEPAYTNTLSLTYVDEANCVGCGLCASVAPN-A 62 
                  55555556666777788999999999999987764.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|20653_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   28.4   0.0    1.2e-07   28.2   0.0    1.0  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
     0.0044   15.1   0.1      0.008   14.2   0.1    1.6  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.8e-11   1.2e-07     528     627 ..      21     117 ..       9     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.8e-11
    TIGR02278 528 leiGdslatarrtvtledivefaelsgdtfyahvdeiaakesplfgkrvahGylvlsaaaGlfvdpapGPvlanyGlenlrflePvkaddsikvrltvkr 627
                  + +Gds at +r vt+++++ +ae++gd+   h d++ a+ + +f   ++hG +   a   l  +  pGP  + +  +nl++  Pv  +d++     v +
  MMETSP1174-20130828|20653_1  21 VSVGDS-ATWSRLVTQAHVEAYAEITGDNNPLHFDQAYAEST-VFKSLITHGGIQSGALNALVAQELPGPG-SVFMQQNLKYAAPVRVGDTVTASGVVTK 117
                  567877.6889************************9888766.**********999999999999999996.457789*************986644433 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.9e-06     0.008      51      98 ..      84     133 ..      52     156 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.9e-06
    TIGR02286  51 NsageaaVAaevtidflrparagevlvAeAkevsrsgrtgv..ydvevrn 98 
                     g  +V  + ++++ +p r+g++++A+ ++ ++++ + +   d++v+ 
  MMETSP1174-20130828|20653_1  84 ELPGPGSVFMQQNLKYAAPVRVGDTVTASGVVTKVHRSKPIcnMDITVTT 133
                  45566789999*****************9988777776666115566553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 768.37
//
Query:       MMETSP1174-20130828|20656_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1504.68
//
Query:       MMETSP1174-20130828|20657_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-14   49.6   0.9    3.7e-08   31.1   0.1    3.0  2  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    1.2e-10   39.1   4.3     0.0014   16.0   0.0    3.1  3  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
    1.9e-06   24.8   2.8    0.00024   17.9   0.0    2.7  3  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.4e-06     0.006      28      71 ..      23      66 ..       6      76 .. 0.77
   2 !   31.1   0.1   2.7e-11   3.7e-08      79     227 ..      98     260 ..      80     271 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.4e-06
    TIGR01331 28 ekeDesPvteADlaaeklilekLralt.PdiPvlsEEeaeiglke 71
                   +D+s  teAD+aa++ i+  Lra    ++ ++ EE+++ +l++
  MMETSP1174-20130828|20657_1 23 AEDDRSALTEADRAAQRAIVGALRAEWgSALRIIGEEDSD-ELTS 66
                 34799*******************8762578999999654.4444 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.7e-11
    TIGR01331  79 wLvDPlDGtkeFikrn.geFtvniaLveegkPvlGvvyaP.......vlgvlyfaeagkaakkevdd.....qalkkkikvreadsealavvisrshaeekvk.elleelgaelvvsvgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildl 227
                    vDPlDGt+eF++ + ++   ++++   g+ v+G++  P       v  ++ ++ ++ +a    +        l++++ +++++  ++a   s ++  +  k + ++ +g ++v+ +g++ ki   A g++ + + +   + WD  A ea+l+++Gg+i+d+
  MMETSP1174-20130828|20657_1  98 IYVDPLDGTREFVEGRlANCQSLVGVAIGGRSVAGAIGIPfpsgdlsVDSTIVYGLSDAGAGFLGTPlargpYPLERHTDTTKFPGPHIATGDSPAEIMAACKaATVKRFGGSNVLYGGAGNKILAAALGEVACSIQHKYGGPWDVCAPEAILTAMGGRITDI 260
                  569**********965389999999999*********99933333322345667777666654433322234455666666666664555544544444444414566****************************************************987 PP

>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   2.6e-05     0.035      26      68 ..      20      63 ..       4      69 .. 0.75
   2 !   16.0   0.0     1e-06    0.0014      78     115 ..     100     138 ..      86     148 .. 0.87
   3 !   12.2   0.1   1.5e-05      0.02     179     228 ..     214     264 ..     184     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.6e-05
    TIGR02067 26 kvdkksdktpVteADraaEeaireliaakfPdd.gilGEEfgee 68
                  +d ++d++  teADraa +ai+  ++a+  +   i+GEE  +e
  MMETSP1174-20130828|20657_1 20 LKDAEDDRSALTEADRAAQRAIVGALRAEWGSAlRIIGEEDSDE 63
                 345556669******************99976538****98765 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1e-06
    TIGR02067  78 lDPiDGTksFirG.vPvwgtLiaLlekgkpvlGvisqPa 115
                  +DP+DGT+ F++G +     L++ + +g+ v+G i  P+
  MMETSP1174-20130828|20657_1 100 VDPLDGTREFVEGrLANCQSLVGVAIGGRSVAGAIGIPF 138
                  8************5566789****************998 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 1.5e-05
    TIGR02067 179 yggdcyayalvAsGrvdlvveael.spyDiaalipiieeAggvitdwkGke 228
                  ygg   + +  A G+v   ++++   p+D++a   i++  gg itd+ G +
  MMETSP1174-20130828|20657_1 214 YGGAGNKILAAALGEVACSIQHKYgGPWDVCAPEAILTAMGGRITDIFGDD 264
                  556666667889999999998876369********************9986 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.8e-07   0.00024      37      90 ..      23      75 ..       4      94 .. 0.78
   2 !    6.2   0.1   0.00063      0.86     139     174 ..     100     137 ..      96     159 .. 0.80
   3 ?   -1.1   0.0       0.1   1.4e+02     296     319 ..     241     264 ..     220     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.8e-07
    TIGR01330 37 skdDksPvtvaDygaqaivilvlkeefpddklsivaeedsetLseddsaqvlgr 90
                 + dD s  t aD +aq  ++ +l+ e+++    i++eeds++L  + + ++ + 
  MMETSP1174-20130828|20657_1 23 AEDDRSALTEADRAAQRAIVGALRAEWGSAL-RIIGEEDSDELTSSLTGETFEP 75
                 569*************************975.9**********98766566555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00063
    TIGR01330 139 LDPiDGtkGflrGdqyavaLaLi...enGkvvlgvlgCP 174
                  +DP+DGt+ f+ G   a + +L+     G+ v g++g P
  MMETSP1174-20130828|20657_1 100 VDPLDGTREFVEGR-LANCQSLVgvaIGGRSVAGAIGIP 137
                  7***********95.677766653226899999999988 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.1
    TIGR01330 296 WDhaaGaviveeaGGvvtDaagkp 319
                  WD  a   i +  GG +tD++g +
  MMETSP1174-20130828|20657_1 241 WDVCAPEAILTAMGGRITDIFGDD 264
                  9******************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1162.24
//
Query:       MMETSP1174-20130828|20654_1  [L=2018]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-122  407.0   0.1   2.5e-122  406.4   0.0    1.3  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
      2e-74  248.8   0.0    1.3e-63  213.1   0.0    2.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    3.7e-74  247.7   0.0    1.1e-52  176.6   0.0    2.1  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    7.9e-62  207.2   0.1    3.9e-53  178.5   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    3.5e-33  112.9   0.0    1.6e-27   94.3   0.0    2.9  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    1.1e-30  104.7   0.1    1.2e-28   98.0   0.0    2.5  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    7.6e-28   95.7   0.0    1.3e-22   78.4   0.0    2.4  2  TIGR00976 /NonD: hydrolase CocE/NonD family protein
    1.6e-22   77.3   0.0    2.4e-18   63.5   0.0    2.5  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.5e-21   72.9   0.5    1.7e-12   44.2   0.2    3.5  3  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.4e-17   61.1   1.1    3.4e-16   56.6   0.8    2.7  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    3.8e-15   53.4   0.7    1.3e-14   51.6   0.5    1.8  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    2.3e-13   47.4   0.2    7.8e-06   22.6   0.1    3.2  3  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    7.3e-11   39.2   0.3      2e-08   31.1   0.0    2.6  3  TIGR02316 propion_prpE: propionate--CoA ligase
    1.2e-05   23.1   0.0    2.1e-05   22.3   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00013   18.1   0.1       0.22    7.4   0.0    3.1  3  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
     0.0071   13.6   0.0      0.018   12.3   0.0    1.6  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
  ------ inclusion threshold ------
      0.031   10.6   0.0      0.048   10.0   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.038   11.3   0.1      0.066   10.5   0.0    1.3  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2
       0.16    8.8   0.0       0.28    8.0   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.4   0.0  1.2e-124  2.5e-122       1     409 []      32     454 ..      32     454 .. 0.91

  Alignments for each domain:
  == domain 1    score: 406.4 bits;  conditional E-value: 1.2e-124
    TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval.......eailleeleekaaedasaeeaaeak.......skpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeeaseelkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege........rlYrTGDlvrlrad..GeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  tY+eLd  a +lA+ + ++ gv +g+ V+v++ers ++vva+la+lk+Gaayvpldp yP++R+a +l+d++  +++t++ela++l++ +        ++i+++++e++++  a+++++           ++++d ayvi+TSGStG+PKgV++eh ++vn+++s+ r  +++++d++l+++++ FD+sv eif++l++G+ l ++++++++ + ++la+l +++++++l++tp++++ll ++ ++ + sl ++++gGea++++l+++l  +a   r++n+YGpTEt+v++t+ +++++e     +++iG+p+an+r+yv++++ +++++vg++GEL+igG gvarGY++r++lt+erF++dpf ++e+         r+Y TGDlv+++++  G le+lGR+D+qvK+rGfRielgEiea la++++ve+avv
  MMETSP1174-20130828|20654_1  32 TYSELDGSACALAKFMMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLPADDDgisknnyTIICVDDTETAEQIIAETNTD---SgmldkvsATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTICFDISVLEIFMTLCHGGILELASATTAR-DGRELARLAETSNAKILQATPATWRLLLAAGWTGCPSLDTLMCGGEAMPKDLAASLVPTAD--RVLNVYGPTETCVWSTYSTITDAE-----KLTIGKPIANTRVYVVKPDhRTRCAVGEPGELLIGGHGVARGYIGRDDLTSERFLPDPFLGPEEItddshaanRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVV 454
                  9*****************999****************************************************************9988888888887666666554444333222221...12345566889999****************************************************************999999999998.999****************************75699*******************998886..9**************998776653.....589**************998999**************************************984477777888***********87656**************************************98 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.1   0.0   6.2e-66   1.3e-63      15     455 ..      20     477 ..       9     488 .. 0.83
   2 !   33.4   0.0   1.8e-11     4e-09     450     498 ..     995    1043 ..     984    1047 .. 0.86

  Alignments for each domain:
  == domain 1    score: 213.1 bits;  conditional E-value: 6.2e-66
    TIGR01734  15 dliayeeegqeltykeLkeesdklaaalqerl.leekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvievaelsielvete.........vitleal...eeieeeka.eaveleka.vkeddnyyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqllnqapysfDLsvmdlyPsLasGGtLvaldkeitnnfkeLfeelkklglnvWvstPsfvdlclldpsfneeklpklteflfcGevLtkktakkLlerfPka.kiyntyGPteatvavtsvkitkeildeyerlPiGfakpdvnlfivdee.GeklsegekGeivivGdsvskGylnnpekteeaff.............eaegkrayrtGDagtiedd..gllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakeedfeke 455
                  + ia++  g +lty eL  ++ +la+++ ++  +++ + + vf +++ +m+va+l+  k+G ay+P+D   p++ri+ +   + + +vi+++el+ +l + +         +i ++ +   e+i +e + ++  l+k+     d  y+i+tsGstG+PkGvq++h+ +v+ ++   +    +++ ++l+ +   fD+sv++++ +L  GG L + + ++  + +eL +  ++++ ++  +tP+   l ll   ++    p+l++ +  Ge ++k  a  L+   P a +++n yGPte  v  t        +++ e+l iG   +++++++v  +   + + ge Ge++i G+ v++Gy+  ++ t e f              ++  +r y tGD ++ +++  g+l + Gr+D q+kl+G+rieL +iea l     +++avv     kd + e L+a+  ++ +  ++e
  MMETSP1174-20130828|20654_1  20 HEIAVRCDGRSLTYSELDGSACALAKFMMKNYgVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLPADDdgisknnytIICVDDTetaEQIIAETNtDSGMLDKVsATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTICFDISVLEIFMTLCHGGILELASATTARDGRELARLAETSNAKILQATPATWRL-LLAAGWT--GCPSLDTLMCGGEAMPKDLAASLV---PTAdRVLNVYGPTETCVWSTYST-----ITDAEKLTIGKPIANTRVYVVKPDhRTRCAVGEPGELLIGGHGVARGYIGRDDLTSERFLpdpflgpeeitddSHAANRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVT----KDPERERLVAYCTPTMNVSNTE 477
                  6789999********************99998578888899**************************************************998655443322233444556666554111444444442333333331356899**************************************************************************************************9998.5555554..69*********************8...55537*********887665555.....55689****************877478999***************************99633333333322222345678******998765449*************************************985....5667788999988887766655 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.8e-11
    TIGR01734  450 edfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrkal 498 
                   ++ ++    t ++k+   k+l+eym+P+ f++ +++plt nGk+Drk+l
  MMETSP1174-20130828|20654_1  995 HSSARWSGNTVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   45555556688999999******************************98 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   0.0   4.9e-55   1.1e-52     266     773 ..      26     493 ..      11     503 .. 0.88
   2 !   68.8   0.0   1.7e-22   3.7e-20     783     939 ..    1004    1152 ..     980    1195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 176.6 bits;  conditional E-value: 4.9e-55
    TIGR03443 266 sktreftykqideasnilahyllkt.GikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivlekaGeldelvedyiedelelvteipalklqddGsleGgklekeetdvlasyeklkdkktgvvvGPdsnptlsftsGseGiPkGvkGrhfslayyfpWmakrfglsekdkftmlsGiahdPiqrdiftPlflGaqllvPtaddigtpGklaeWmakykatvthltPamGqllsaqataqiPslhhaffvGdiltkrdclrlqalaenvaivnmyGttetqravsyfeiksrsedstflkklkdvipaGkGmknvqllvvnrndrtklcgvGevGeiyvragGlaegylglpelnaekfvknwfvekekwkekdkekkkawrefwlgprdrlyrtGdlGrylPd..GnvecsGraddqvkirGfrielGeidthlsrhPlvrenvtlvrrdkdeektlvsyivpkeekdeleelkaekdeeeeedkvv 773
                   + r++ty ++d ++  la++++k+ G+  g +v v+  r+  +vva+l +lk+Ga++  +dP yP +r ++ l  +   a+i+ ++  +  +   d i+++   +  + + + +++  ++ +++++    +l++ ++ +++++ v+          ftsGs+G+PkGv+  h+++    +  ++  g++++d f  ++ i  d    +if  l  G  l + +a        la   ++++a +   tPa  +ll a   +  Psl   +  G+ + k    +l   a+   ++n+yG tet    +y +i+  ++           +  Gk + n ++ vv    rt  c+vGe Ge+ +   G+a gy g ++l++e+f+ + f  +e+ ++  ++             +r+y tGdl ++  +  G  ec Gr d qvk+rGfrielGei++ l+ h  v + v  v +d + e+ lv+y  p+ + ++ e   ++k e++++++ v
  MMETSP1174-20130828|20654_1  26 CDGRSLTYSELDGSACALAKFMMKNyGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLPADDDGISKNNYTIICVDDTETAEQ-IIAETNTDS---GMLDKVSATASDRAYVI----------FTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTICFDISVLEIFMTLCHGGILELASATTARDGRELARLAETSNAKILQATPATWRLLLAAGWTGCPSLDTLMCGGEAMPKDLAASLVPTADR--VLNVYGPTETCVWSTYSTITDAEK-----------LTIGKPIANTRVYVVKPDHRT-RCAVGEPGELLIGGHGVARGYIGRDDLTSERFLPDPFLGPEEITDDSHA------------ANRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAV--VTKDPERER-LVAYCTPTMNVSNTEGSGSNKRENSDDQNEV 493
                  56799**************9987655************************************************9999889998888777677888899988887778888877766.444444443...48999999999888887..........9*****************************************************************9999988889**********************************************999999999986..68********98877777764432...........5689***********876666.6**************************************9998765443............3689*******998655599*********************************9876..788887775.9*******99999999988888777666544 PP

  == domain 2    score: 68.8 bits;  conditional E-value: 1.7e-22
    TIGR03443  783 ikdikeylkkklasyavPtvivplkklPlnPnGkvdkPalpfPdtaqlaavakkesaeaeeeeltetekeirdlWlevlPnkpatiskddsffdlGGhsilatrlifelrkklvvevplgvifkkPtikafakevdrlkkaelelaeekesekeeek 939 
                   + ++k   +k l+ y vP+ +v l+ +Pl  nGkvd+ +lp P ++  a      ++e ++  + ++e +i+dl+ e+l    ++++ dd ff lGGhs+la rl+ +l   + + +plg + +  t++ +a+ v++  ++  + ++++++++++++
  MMETSP1174-20130828|20654_1 1004 TVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQLPAPPSKGEA------RTEEATPLIGDVEVAIADLYQELLGL--DEVGADDDFFALGGHSLLAVRLLGKLGDMYGIRIPLGELAEMDTLRMLASTVSNYLAKISQQDQNRNTRSRSAS 1152
                   56889999***********************************987544......44556677899*************86..579*************************************************9866554344554444444333 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   0.0   1.8e-55   3.9e-53      11     454 ..      16     459 ..       9     477 .. 0.87
   2 !   26.4   0.0   2.3e-09   4.9e-07     475     514 ..    1004    1043 ..     988    1045 .. 0.90

  Alignments for each domain:
  == domain 1    score: 178.5 bits;  conditional E-value: 1.8e-55
    TIGR03098  11 erepdatalklkdrtltyaaLseevkalasg.lkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakch.dlrtlilvdepekasekkagaevlsweklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGlnqlttaflvGatvvlldyllpkD...vlkavekekitglaavPPlWlqLakldwpeeaaeslRyltnsGGalpkavlarlRkllpea.klylmYGLteaf.RstyLdPeevdrrPdsiGkaipnaevlvlredG.secapeeeGelvhrGalvakGYWndpektaerfrpl....pkr.qselkltelavfsGDlvr..rDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpd 454
                  ++  + +a+  ++r lty++L+ +++ala+  +k  g++ g  v++++e++++ v+al+a  + g+++vp++P+  ++ +a +l+D+    ++t+ke  d+l   ++ ++ +  t+i vd++e+a++          +++++ +    kv+++ +d a +++tsGstGrPkgv l h+ +v+  +s  +   +++ D  l+v  + fD  +  +  ++ +G+ + l    +++D   + +  e  +   l a P  W  L  + w      sl  l   G a+pk + a l   +p+a ++  +YG te    sty      d     iGk i+n+ v v+++d   +ca++e+Gel   G  va+GY   ++ t erf p     p++ +++++  +++   GDlv+  +++ G+l  +gR d+ +k  G+R+   e+e+ l + + v++avv   p+
  MMETSP1174-20130828|20654_1  16 AQLGHEIAVRCDGRSLTYSELDGSACALAKFmMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLPADDDGISkNNYTIICVDDTETAEQI--------IAETNTDSGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTICFDISVLEIFMTLCHGGILELASATTARDgreLARLAETSNAKILQATPATWRLLLAAGWT--GCPSLDTLMCGGEAMPKDLAASL---VPTAdRVLNVYGPTETCvWSTYST--ITDAEKLTIGKPIANTRVYVVKPDHrTRCAVGEPGELLIGGHGVARGYIGRDDLTSERFLPDpflgPEEiTDDSHAANRVYTTGDLVQwsKNQPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTKDPE 459
                  4567899*********************99626899***************************************************************99988887765156789999999854443........456777777788999********************************************************************************998555777888889999****************9..99*****************9987...4555167889*****852677754..45777789**************986268*********************************9555544414455666666668***96447889**************************************9976444 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 2.3e-09
    TIGR03098  475 kkellkelraelPaymvPakielrealprnanGkiDrkal 514 
                   + el++ +r++lP+ymvP +  + e +p + nGk+Drk+l
  MMETSP1174-20130828|20654_1 1004 TVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   568999*******************************987 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   7.2e-30   1.6e-27       1     384 [.      32     459 ..      32     462 .. 0.81
   2 !   14.2   0.0   1.5e-05    0.0032     402     442 .]    1003    1043 ..     994    1043 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 7.2e-30
    TIGR01923   1 tfaeldkeaarlAka.lkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleeke..........dlqaisldeleaeae.aeevs........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPl.yHvsGlsilfrallegatlkivdkfaae...qllesianekvthiSlVptqLkrlleesssepeslrkiLLGGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd......keghgeilvkganlmkgYlekgelt.............e....aveeqGwlktgDlgeldge..gfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeD 384
                  t+ eld +a  lAk  +k ++v  g++v++++e s ++v++lla+l+ g+  ++l +  ++ +++ +l+++ +  ++t++ l +k           + ++i +d++e++++  +e++        +s   +  + a +ifTSgstG+pK+v+  ++  ++ + +  +  g+++ d  L++  + + +s l i + +l +g  l++ ++  a    +l+   +  +   + + p + + ll +  +   sl +++ GG+a+p +l+ +       + + yG TEt+  ++ +++   + k+ + Gkp+a+  + + ++d        + ge+l+ g+ +++gY  +++lt             e        +  + tgDl +++++  g l  l+R d  +   G  i   eiE+ l  ++ v++avv   ++
  MMETSP1174-20130828|20654_1  32 TYSELDGSACALAKFmMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLpadddgisknNYTIICVDDTETAEQiIAETNtdsgmldkVS--ATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTIcFDISVLEIFM-TLCHGGILELASATTARdgrELARLAETSNAKILQATPATWRLLLAAGWTGCPSLDTLMCGGEAMPKDLAASLVPTADRVLNVYGPTETCVWSTYSTITDAE-KL-TIGKPIANTRVYVVKPDhrtrcaVGEPGELLIGGHGVARGYIGRDDLTserflpdpflgpeEitddSHAANRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTKDPE 459
                  7999*********9626899**********************************************************9999865534443333335566666666666644233336677754444..45667899*****************************************99987699**999765.788999999987766541116777777778888999999********999779*************************************887766665555.45.59**********999887887766688***************999987222222222222111111223467899*******7653489999********99***********************9987765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.5e-05
    TIGR01923  402 skakltaylkeklaKyKvPiafekldelpkeasgKilRnkl 442 
                   ++ +l+a ++++l  y vP af++l+e+p +++gK++R++l
  MMETSP1174-20130828|20654_1 1003 NTVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   567899*********************************96 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   5.4e-31   1.2e-28       7     446 ..       7     463 ..       1     487 [. 0.79
   2 ?    3.6   0.0     0.022       4.7     467     505 ..    1005    1043 ..     993    1045 .. 0.91

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 5.4e-31
    TIGR02262   7 edlldrnvvegrgdklafiddvsslsygeleaevrrvaa.alrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlaklpdle.klvvvgakpagekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerptpda...vfdrlrr.vkptifygvptlyaamladpelkaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.dggedvadgevGellvsgpssaagywnnreksratf.....eGe..wt..........rsGd..kyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededgl 446
                  +  +d+ v +  g+ +a   d +sl+y+el+ ++  +a+ ++++ Gv     v + +  +  + +++l  +++G   v+l+ +   d  a +l+ds + +v+ ++el   l +    + + + +++ v +++++e+ +ae   t+s   +  +++a d a+ +++sGstG+pkGv   h  +  + e ++r + g+++ dv +s + + f   + + +++ l+ G   +l     t+++    + rl +  + +i+ + p+ +  +la+  +      +l      Gea+p+++  +        +l+  G te        +  d +  t Gkp+   r+ +v+ d     a ge+Gell+ g   a gy ++ + + + f      G+   t           +Gd  ++ +n+ G+    Gr d  +k+ G  +   e+e++l +h++v +a v    + + l
  MMETSP1174-20130828|20654_1   7 NARVDQLVSAQLGHEIAVRCDGRSLTYSELDGSACALAKfMMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADKLPADDDGISKNNyTIICVDDTETAEQIIAE-TNTDSGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGR-ITGIKKRDVFLSVTTICFDISVLE-IFMTLCHG--GILELASATTARdgrELARLAEtSNAKILQATPATWRLLLAAGWTGC---PSLDTLMCGGEAMPKDLAASLVPT-ADRVLNVYGPTETCVWSTYSTITDAEKLTIGKPIANTRVYVVKpDHRTRCAVGEPGELLIGGHGVARGYIGRDDLTSERFlpdpfLGPeeITddshaanrvyTTGDlvQWSKNQPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTKDPERERL 463
                  56677788888999*****************998888763778****************************************************************998876665555555055555555555555555.566666666666667889*****************************876.78****************998754.34444444..44444444444301134444334899***************987655...456666789**********99765.56799*******9887777788889999**************99999*************************9999877622222454222222222222224787555789999*********************************9966665555555555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.022
    TIGR02262  467 eelkehvkdklapykyprwievvddlpktatGkiqrfkl 505 
                    elk+  +++l  y  p    +++++p t  Gk+ r +l
  MMETSP1174-20130828|20654_1 1005 VELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   689********************************9776 PP

>> TIGR00976  /NonD: hydrolase CocE/NonD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0     6e-25   1.3e-22       6     271 ..    1207    1474 ..    1206    1489 .. 0.79
   2 !   14.5   0.0   1.3e-05    0.0028     399     507 ..    1601    1719 ..    1580    1733 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 6e-25
    TIGR00976    6 GvrLaiDvylpaegg..............avPvilsrtpYgksallrltldktepaefvaqGYavVvqDvRGrgaSeGeldlls...sdeaeDgydlvdWiakqpwsdGkVamlGvSYdavtqlll....aaskppaLraiaPleslsdly.qdiafeGalrldellgwlakl.avdsarrraddrslraaalarlkksyddeeiaesltprskvlaldqligqlkqledddsdeswssislardleaidvpilvvgGwyD.lflrgsikeflaveeggqklvvGpWtHs 271 
                   G  L + +++p   +              ++P+i+    Y  s   ++ ld+ ++++++ +GY    +D RG g+S G     +     e+ D   +v W+a+qpw+dG V  lG SY a+  l++    a++ p  L+ ++++ ++ d y +d+ f G   l e l w a+l ++ + ++  ++ +          +        ++ + r +     +l ++l+++  d  + + s+    r +   +vpi+ v+G     +++   +   ++ ++    +vGpW Hs
  MMETSP1174-20130828|20654_1 1207 GCLLSARLWRPGHAQnkhafntnptascgRIPAIVQMDVYRHS-DGTRHLDSLTGPWLAGNGYSLLRVDRRGTGNSLGGGYHGGeytKREILDLFQVVVWAAEQPWCDGDVFLLGHSYSAILSLAAigfpAEKRPIQLKGVIAVCGTDDTYaEDMHFMGGAPLIEQLCWGANLlSILTLPPQPNQ-N----------E-----SWRQEWMSRMENCRTPPLTEWLQHPLRDSQWTETSP----RGRLDGKVPIFLVQGLAGgSYMNCVPRLLNELGKN-VTALVGPWAHS 1474
                   56666667777655556667777777777***********999.55678****************************988766544589*********************************99986666788899**************94577888888898999998875166666655555.2..........2.....222223333333334456678886666777777777....5556679**********999999999999999999.88999*****8 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.3e-05
    TIGR00976  399 akqdrlddradvltytseplkedlevtGtvkvk..LtarsdakdgdvavkLedvdpdGrailitegilrakkretsek........geiyeldidLgatavlfapGhrlrvevassnfp 507 
                    ++d+  d+a+++++ +epl+e++   G + v+  L +    + g v+++L  v p G +  ++ g++ + +r+ s++        g  ++l +dL   +v    G ++ +++  +  p
  MMETSP1174-20130828|20654_1 1601 HPRDQRTDDAQSICFKTEPLTEPTILLGCPWVEicLQLPPGLQRGMVTARLCAVSPSGYSTRLSFGAVNLLHRVGSHNaayqipalGGRVDLSLDLNFLSVQVPEGYQILLALHTQYWP 1719
                   567888999******************9876551167778899*******************************99999999**99999999999999999999999888877666555 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.1e-20   2.4e-18      33     460 ..      15     454 ..       4     460 .. 0.80
   2 !   10.8   0.0   0.00011     0.023     484     525 ..    1003    1043 ..     998    1044 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 1.1e-20
    TIGR02275  33 aakkpdaiaiicgerkfsyrelderadnlaas.ltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivagkeveeelksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnyplssPGalGvfyaGGcvvlaadpspteafpliekhkvtvtalvPpavalwldaaeksradlsslkllqvGGaklsealarrvpkvlgcklqqvfGmaeGlv..nytrlddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyykaeehnakaf................daeGfyitGdlvkltke..GyivveGrakdqinrGGekiaaeeienlllkhpavidaal 460
                  +a+ ++ ia+ c+ r ++y eld  a +la   +++ G+  g  + v +     + ++++a+lk+G+a v   + +    +      + + ++i+ ++   + ++  a++  ++ ++   + v+++e++e+   + ++    ++  +++a++ a++ ++ GstG pk +   h+  +  v+    i  ++++ ++l++  +   + +s    +  +  GG + la+ +++++  +l +  + + + ++ +  a w   +    +   sl  l  GG  + ++la+ +  +   ++ +v+G +e  v  +y+ + d +++   t GkPi++     v  ++    a Ge G ll+ G    rGy   ++  ++ f                 a+  y+tGdlv+ +k+  G +   Gr   q+   G +i   eie  l +h +v +a +
  MMETSP1174-20130828|20654_1  15 SAQLGHEIAVRCDGRSLTYSELDGSACALAKFmMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKE---LADKLPADDDGISKNNYTIICVDDTETAEQIIAETNTDSGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTI--CFDISVLEIFMTLCHGGILELASATTARDGRELARLAETSNAKILQATPATWRLLLAAGWTGCPSLDTLMCGGEAMPKDLAASLVPTA-DRVLNVYGPTETCVwsTYSTITDAEKL---TIGKPIANTRVYVVKPDHRTRCAVGEPGELLIGGHGVARGYIGRDDLTSERFlpdpflgpeeitddshAANRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVV 454
                  4667899***********************8615778******************************9888888888888877666665555555443...334444555555666666677777444444444444444446666889999*********************************************9765..6889999999999**************9999998888888888888888888888888899999*************99999887665.56778*******994457778877654...78****998888888899999********************97766555544222222222222111156788*******988755599*********************************99864 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR02275  484 kavqlrrflreaGlaeyklPdrvelidslPltavGkidkkal 525 
                   ++v+l++    + l ey +P  + +++++Plt  Gk+d+k+l
  MMETSP1174-20130828|20654_1 1003 NTVELKAL-CRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   67788765.55689**************************98 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.2     8e-15   1.7e-12      86     289 ..      27     211 ..      10     272 .. 0.81
   2 !   23.5   0.0   1.5e-08   3.3e-06     477     550 ..     397     469 ..     389     496 .. 0.79
   3 ?   -0.6   0.0       0.3        64     562     601 ..    1004    1043 ..     979    1060 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 8e-15
    TIGR02188  86 dsrkltYaellrevcrlan.vlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaD 289
                  d r+ltY+el  + c la+ ++k++Gv  g  v +++    ++v+a+la+ + Ga +  +   + ++ +a  + d+ +  vit+ e   +        + d+ ++k +    +++ v  t++  +       +  e+ ++   s  ++  +  + d  ++++tsGstG+PkGv+      ++ ++ ++  +  ik+ d+f  ++ 
  MMETSP1174-20130828|20654_1  27 DGRSLTYSELDGSACALAKfMMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADK------LPADDDGISKNNY---TIICVDDTETAEQ-------IIAETNTD---SGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHA-VVNMVESFGRITGIKKRDVFLSVTT 211
                  6899**************935678***********************************************************9886532......2456889998874...6777777665522.......22222222...34444455678899****************976654.5677778888899999999877655 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.5e-08
    TIGR02188 477 lkglyftGDgarrdkd..GyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvl 550
                  ++++y tGD ++  k+  G +  lGR+D  +++ G r+   eie+ l +h++v e avv+++ e   e +va+ + 
  MMETSP1174-20130828|20654_1 397 ANRVYTTGDLVQWSKNqpGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSV-EQAVVTKDPE--RERLVAYCTP 469
                  5679*****987554444**********************************9.6777766544..4556666554 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.3
    TIGR02188  562 ekelkklvrkeigpiakpdkilvveelPktRsGkimRRll 601 
                   + elk+l rk++ ++  p+   + ee+P t  Gk+ R+ l
  MMETSP1174-20130828|20654_1 1004 TVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   5699*******************************99866 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.8   1.6e-18   3.4e-16      33     425 ..      17     386 ..       6     396 .. 0.79
   2 ?   -0.3   0.0      0.27        58     503     540 ..    1006    1043 ..     997    1044 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.6e-18
    TIGR03205  33 dygarpalefrdraitytelealaetaaaallragyg..kdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllits.dlaallpmalkflekglldrlivcedeswgkvgtpkaaipadprivtyadfvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrsl.krgdlislhqrfdvaavlrdieekratvfpgvptmwialandpslekrdlsslatigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywnraeesaeafvgdrflt 425
                  + g   a+    r++ty+el+  a +  a ++   yg    + v++++       + ++  lk+ga  v l p+     ++  l+dsg+  +it+ +la  lp     ++k   +  i+c d++  +    +       +i++    ++  +  ++  + +a d a + +t g+tg pkg  l h  +   v     +g+ +  ++ dv   +  +  f i  l + +  +     +l s     d   + r  e   a ++   p+ w  l +          sl t+  gg  +p ++a  +   ++ ++   +g tetc   t    +  +k  +ig  +    + vv  d  ++    ge gel i g  v+rgy  r + ++e f+ d fl 
  MMETSP1174-20130828|20654_1  17 QLGHEIAVRCDGRSLTYSELDGSACA-LAKFMMKNYGvsAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTkELADKLPADDDGISKN--NYTIICVDDTETA----E-------QIIAE---TNTDSGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVE---SFGRITGIKKRDVFLSVTTI-CFDISVLEIFMTLCHgGILELASATTARDGRELARLAETSNAKILQATPATWRLLLAAGW---TGCPSLDTLMCGGEAMPKDLAASLVPTAD-RVLNVYGPTETCVWSTYSTITDAEKL-TIGKPIANTRVYVVKPDHRTRC-AVGEPGELLIGGHGVARGYIGRDDLTSERFLPDPFLG 386
                  567778899999*********98765.45555555551055679****99999999*********************************87776527999******999998..5678888875322....1.......22222...12223334445567889999******************98766664...44555555555554443333.47777777655444302336778888999***********************88877654...56789999999**********99876555.56678***********9999999986.7*************99998886.68********************************996 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.27
    TIGR03205  503 elraflagklgkhelpvavelvdelprtsvgklsrhel 540 
                   el+a+ +  l  + +p+a  +++e+p t  gk+ r++l
  MMETSP1174-20130828|20654_1 1006 ELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   67788888899999********************9876 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.5   6.2e-17   1.3e-14      50     484 ..      27     465 ..      11     482 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 6.2e-17
    TIGR03208  50 avrrlsyreldalvdriavg.larlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvpksfrgfdhaamarelqsklpalrqvvvvdgdgdddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgfmyglmlplvlrasavlqdiwnaakaaelir..etgvtftmastafltdlaravkesgepvsslktflcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadgak.lsagevgrllvraasnfggylkrphlna..............vd....aegwfdtgdlafl..daegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeraca 484
                  + r l+y eld  +  +a+  +++ gv  g +v + +    ++v+  la  + ga+  pl p++    ++ ml+ + s  ++  k + +     + +   ++  +  +  ++  d +++ +++++    + + d + +l +   +  d + +i+tsg+tg pkgv     +++  + ++ +   +++ dv l  + +         +++ l  +    l     a    el r  et  +  + +t+    l  a   +    +sl t++c g  +p  l          +++  +g te+   ++     + ek   t g+p+    v v+  d ++  + ge g+ll+ +     gy+ r +l +              +d    a+  + tgdl +   +  g +   gr    +   g  i + eiea l  h +v q  +   p++   er  a
  MMETSP1174-20130828|20654_1  27 DGRSLTYSELDGSACALAKFmMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSGSPAVITTKELADK----LPA--DDDGISKNNYTIICVDDTETAEQIIA----ETNTD-SGMLDKVSATASDRAYVIFTSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTICFDISVL-EIFMTLCHGGILELASATTARDGRELARlaETSNAKILQATPATWRLLLAAGWT--GCPSLDTLMCGGEAMPKDLAASL-VPTADRVLNVYGPTETCVWSTYSTITDAEK--LTIGKPIANTRVYVVKPDHRTrCAVGEPGELLIGGHGVARGYIGRDDLTSerflpdpflgpeeiTDdshaANRVYTTGDLVQWskNQPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTKDPER---ERLVA 465
                  45789***********998626789*****************************************************999998876532....111..22223333445555566777888888....33444.5689999999999******************999999888888888889**********9999887754.445555555555555555555555555522455556677777777777776444..578*************9997654.45567999*******988777666666665..577*************9987626789*****************998875422222222222222223333788999****9751156699******88777777889****************99888877775...44444 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   3.6e-08   7.8e-06      84     242 ..     152     312 ..     130     317 .. 0.74
   2 !   18.9   0.0   4.8e-07    0.0001     243     341 ..     367     469 ..     346     480 .. 0.81
   3 ?    1.6   0.0     0.086        19     352     385 ..    1005    1038 ..     996    1039 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.6e-08
    TIGR02372  84 emvdLiadrstetarltfatsGstgtPkPvthswaaLlreaealakalgerpapvravial....vPahhlyGfl.fsvllPeaaGaevkelaaapaaallrearpgdLivatPalWeqladadar.lPG.vvGvssgapleaalwrsllaaGleallevyGatet 242
                   m+d + +  +++a ++f tsGstg Pk v+    a+++  e++ ++ g +  +v   ++     + +  ++  l ++ +l  a  +++++   ++    l e+    ++ atPa W+ l +a+    P   + +  g +++++l  sl+    +++l+vyG tet
  MMETSP1174-20130828|20654_1 152 GMLDKVSATASDRAYVIF-TSGSTGRPKGVQLEHHAVVNMVESFGRITGIKKRDVFLSVTTicfdISVLEIFMTLcHGGILELASATTARDGRELA---RLAETSNAKILQATPATWRLLLAAGWTgCPSlDTLMCGGEAMPKDLAASLVP-TADRVLNVYGPTET 312
                  466777777767777776.9*****************************88887744333311224566777655256666667777777777776...67778888999*********99999753799445567788999999988876.579**********9 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 4.8e-07
    TIGR02372 243 GGiGlreapdedfrlLPdlarsadalssdgaarrldlqdrlrWdd..ervfvieGrldeilqvgGvnvspghvkdvLeaepavealavrldGe..rLkafivv 341
                  G iG     +e f   P+l  +  +  s  a r     d ++W++  ++v+  +Gr+d  +++ G  + +g+++  L ++ +ve++ v  d e  rL a+ ++
  MMETSP1174-20130828|20654_1 367 GYIGRDDLTSERFLPDPFLGPEEITDDSHAANRVYTTGDLVQWSKnqPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTKDPEreRLVAYCTP 469
                  5677777788888888888877777777666666788899***8722578999************************************99885567776665 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.086
    TIGR02372  352 aeLrataaehLpaparPddlrfgteLPrtaaGkl 385 
                   +eL+a   + Lp    P  + f  e+P+t +Gk+
  MMETSP1174-20130828|20654_1 1005 VELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKV 1038
                   6899****************************97 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0076       1.7      81     159 ..      28     108 ..       7     116 .. 0.82
   2 !   31.1   0.0   9.3e-11     2e-08     231     527 ..     161     455 ..     143     491 .. 0.79
   3 ?   -2.8   0.0       1.8   3.9e+02     548     598 ..     992    1043 ..     968    1047 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0076
    TIGR02316  81 ertltyrqlhrevnalas.alralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaaridda.tpkli 159
                   r+lty +l     ala  +++  gv  g  v +++      ++alla  + ga +  +   + ++ +a+ + d+  p +i
  MMETSP1174-20130828|20654_1  28 GRSLTYSELDGSACALAKfMMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDPMYPTDRIAVMLADSgSPAVI 108
                  5789999999999999974789********************************998888888888888877664155555 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 9.3e-11
    TIGR02316 231 snepsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgkpvidnywqtetg.wpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpnekgllvvaa.plppgclstvwgddarflktyf.........safkrllyssld...wgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvg 527
                  +++ +y+++tsg+tg+pkgvq +     v +  s+  i g+k  dv++s + + + +     ++  l  g    l     t  dg    ++ e  + + + ++p++ r+l    a +       sl++l+  ge + +  a  +  + ++ v++ y  tet  w   +     d    kl + g p+   r+ v++      ++++e g l + +  +  g +        rfl   f         s+  + +y++ d   w+ +++ g    lgr d  +++ g r+   eie ++++h++v + avv 
  MMETSP1174-20130828|20654_1 161 ASDRAYVIFTSGSTGRPKGVQLEHHA-VVNMVESFGRITGIKKRDVFLSVTTICFDISVL-EIFMTLCHGGILEL-ASATTARDGRELARLAETSNAKILQATPATWRLLLA--AGW---TGCPSLDTLMCGGEAMPKDLAASLVPTADR-VLNVYGPTETCvWSTYSTIT--DA--EKL-TIGKPIANTRVYVVKPDHRTRCAVGEPGELLIGGhGVARGYIGRDDLTSERFLPDPFlgpeeitddSHAANRVYTTGDlvqWS-KNQPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQ-AVVT 455
                  57889****************99754.6899************************99865.56666766654333.456678899999*********************965..444...467899**********99999888888775.899******96466555443..33..344.34778999999999999999********99997625788888777667789997544344444443788899***97722244.7889**********************************955.5654 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.8
    TIGR02316  548 svedaddaha.lekelmalvesqlgavarparvyvvaalpktrsgkllrrai 598 
                   + ++++++ +    el+al  + l ++  p+   +++++p t  gk+ r+ +
  MMETSP1174-20130828|20654_1  992 ETNHSSARWSgNTVELKALCRKTLPEYMVPSAFVFLEEMPLTDNGKVDRKQL 1043
                   344444444313458899999999999********************99876 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   9.8e-08   2.1e-05      23     124 ..     547     661 ..     542     676 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 9.8e-08
    TIGR02072  23 LlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..............nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvl 124
                  + +l+++  ++ p++vL++GcG G++   +++   ++ +   Dis e ++   k+l+              + +   g  e+l++ k+++D iv+n +   + +l+ +l+ ++++l
  MMETSP1174-20130828|20654_1 547 IFNLFQAE-QTVPKRVLEMGCGNGMILFRCAQHPGTELYHGADISTEATQYIMKQLNskeepsflpplphvQCHSPIGAHESLNFKKNRLDTIVCNGVSMYFPSLEYTLTCIQNAL 661
                  56677776.5889******************999999999******999988888878999********55445556999****************99888888876665444433 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.001      0.22     114     171 ..      30      88 ..      22      98 .. 0.86
   2 !    4.3   0.0    0.0088       1.9     237     316 ..     133     213 ..     123     264 .. 0.78
   3 ?    2.3   0.0     0.037       7.9     499     554 ..     399     456 ..     394     468 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.001
    TIGR01217 114 kvtfeelrrqvaslaa.alralGvkkGdrvagylpnipeavaallatasvGaiwsscsp 171
                   +t+ el    + la+  +++ Gv +G  v  ++  + + v+alla    Ga +    p
  MMETSP1174-20130828|20654_1  30 SLTYSELDGSACALAKfMMKNYGVSAGSLVGVFMERSEHMVVALLAILKTGAAYVPLDP 88 
                  689****999888887257889*************************999998876665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0088
    TIGR01217 237 kvegaltledllaaaqaaelvfeqlp..fdhplyilfssGttGvpkaivhsaGGtlvqhlkehvlhcdltdgdrllyyttvG 316
                   v+++ t e+++a ++    + +++    +   y++f+sG+tG pk  v+ +   +v+ +  ++  +++++ d++l  tt+ 
  MMETSP1174-20130828|20654_1 133 CVDDTETAEQIIAETNTDSGMLDKVSatASDRAYVIFTSGSTGRPKG-VQLEHHAVVNMVESFGRITGIKKRDVFLSVTTIC 213
                  567777777888876666666666651146779*************8.5666777888888888888888888888888876 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.037
    TIGR01217 499 gvwahGdyieltp..rGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvig 554
                   v++ Gd ++++    G +  +Gr d+ +   G r+   ei  ++     ve+++v  
  MMETSP1174-20130828|20654_1 399 RVYTTGDLVQWSKnqPGVLECLGRIDSQVKLRGFRIELGEIEATLATHTSVEQAVVTK 456
                  6999*******88535666799*******************99999999999887754 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.6   1.4e+03     112     146 ..     128     163 ..     123     168 .. 0.82
   2 !   12.3   0.0   8.2e-05     0.018      85     163 ..     554     641 ..     537     642 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.6
    TIGR03534 112 dakviavDiseeAlk.varkNakrlglkeveflksd 146
                  ++++i+vD +e+A + +a+ N ++  l++v++  sd
  MMETSP1174-20130828|20654_1 128 NYTIICVDDTETAEQiIAETNTDSGMLDKVSATASD 163
                  678999999999988358899999999999998887 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 8.2e-05
    TIGR03534  85 kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke..veflksdlleal.......eekgkfdlivsN 163
                  +++ + +vl++g+G G+I    a++  +   +++Dis+eA ++  k +++ +  +    + + ++++++        +k+++d iv+N
  MMETSP1174-20130828|20654_1 554 EQTVPKRVLEMGCGNGMILFRCAQHPGTELYHGADISTEATQYIMKQLNSKEEPSflPPLPHVQCHSPIgaheslnFKKNRLDTIVCN 641
                  555579*******************8888889**********9988777766665553344444444444444446567778888887 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022     0.048     280     330 ..     555     605 ..     543     610 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00022
    TIGR04074 280 esgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldr 330
                  ++  ++vl++GcG+g +l + +++   e   g+d+s+++ +   ++l+ ++
  MMETSP1174-20130828|20654_1 555 QTVPKRVLEMGCGNGMILFRCAQHPGTELYHGADISTEATQYIMKQLNSKE 605
                  55669**********************************999999998766 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031     0.066      41     113 ..    1252    1328 ..    1235    1339 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
    TIGR03101   41 sRrmvalqakalaaeGfgvlqiDlyGtGDSaGd.faeaswdvW.keDvaaalrwlkek..gaqavtLwglrlgalLa 113 
                   +R+  +l +  la +G+ +l +D +GtG S G  +    +      D+   ++w  e+      v L+g   +a+L 
  MMETSP1174-20130828|20654_1 1252 TRHLDSLTGPWLAGNGYSLLRVDRRGTGNSLGGgYHGGEYTKReILDLFQVVVWAAEQpwCDGDVFLLGHSYSAILS 1328
                   79999999999*******************76413333322220235555566665552223456666666666665 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0013      0.28     107     152 ..     549     595 ..     534     605 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0013
    TIGR00536 107 eslisqepl.khilDlgtGsGcIalalAleipnaeviavDistdala 152
                  +  + ++++ k++l++g+G G I   +A +      ++ Dist+a +
  MMETSP1174-20130828|20654_1 549 NLFQAEQTVpKRVLEMGCGNGMILFRCAQHPGTELYHGADISTEATQ 595
                  3334445556********************999999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2018 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.92u 0.20s 00:00:02.12 Elapsed: 00:00:01.35
# Mc/sec: 1972.99
//
Query:       MMETSP1174-20130828|20660_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.3   0.6      0.088   10.9   0.1    1.9  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   2.2e-05     0.088      34      45 ..      76      87 ..      59      89 .. 0.84
   2 ?   -3.3   0.0      0.62   2.5e+03      12      18 ..     147     153 ..     144     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
    TIGR04165 34 vgeikCskCGyv 45
                  ++ kCskCGyv
  MMETSP1174-20130828|20660_1 76 KKTWKCSKCGYV 87
                 5788*******9 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.62
    TIGR04165  12 kCGskDK 18 
                  +CG++ K
  MMETSP1174-20130828|20660_1 147 VCGERQK 153
                  7999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 1712.09
//
Query:       MMETSP1174-20130828|20661_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 824.93
//
Query:       MMETSP1174-20130828|20667_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 173.24
//
Query:       MMETSP1174-20130828|20670_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 779.16
//
Query:       MMETSP1174-20130828|20671_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|20669_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 963.92
//
Query:       MMETSP1174-20130828|20673_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   33.6  18.5    7.1e-08   30.5   3.4    2.5  2  TIGR00880 2_A_01_02: multidrug resistance protein
    1.5e-08   31.8  11.8    9.2e-05   19.3   4.2    2.4  2  TIGR00893 2A0114: D-galactonate transporter
    4.2e-07   27.2   1.7    7.7e-07   26.3   1.2    1.3  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    0.00089   15.8   3.3       0.01   12.3   0.2    2.2  2  TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter
     0.0036   14.5   0.8     0.0036   14.5   0.5    2.1  2  TIGR00900 2A0121: H+ Antiporter protein
  ------ inclusion threshold ------
       0.73    6.5  10.1       0.18    8.5   0.3    2.1  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   4.0   0.00069      0.47      54     135 ..       4      85 ..       1      91 [. 0.88
   2 !   30.5   3.4     1e-10   7.1e-08      12     138 ..     221     349 ..     217     352 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00069
    TIGR00880  54 liiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilll 135
                  ++  r+l Gfga   +v+g +l +  +  +e++ a+g+ +++  l+ +   l+  +la+ +g +  f++ +l+++l++ + +
  MMETSP1174-20130828|20673_1   4 ILGGRVLFGFGAESLSVSGSTLTSAWFIGRELAFAMGVTLSVSRLSSVANDLVSPLLAARFGTQSAFYFGLLICVLSISSAI 85 
                  5678******************************************************999**9***998888777654444 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 1e-10
    TIGR00880  12 lvvsplsglltdrvGrkpv.llvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla...qalgwralflilallallafilllfll 138
                  +++ p++g l+d +G++++ +l++ ++ +++++++++ss  ++ i +++ +G++++++  ++  ++  ++++e ++  +gll + +++ + l pl+ a+l       ++r++ l++a l+l a++++l+l+
  MMETSP1174-20130828|20673_1 221 AFLTPIIGNLVDHFGKRQLwMLCSSLLLAVAHFILTFSS--VSPIPSFVCIGLAYSVVAGVIWPSVPCVVDPEFKGLGFGLLTSLQNVTLCLTPLVIAYLLeayGKDNFRYPELFMASLSLCAALMSLLLW 349
                  6889***********998758888888888888877765..6778999****************************************************955556679*************999998876 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.9e-06    0.0013      89     160 ..       8      79 ..       2     103 .. 0.81
   2 !   19.3   4.2   1.4e-07   9.2e-05     253     398 ..     209     348 ..     164     349 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.9e-06
    TIGR00893  89 RvllGla.EaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaii 160
                  Rvl+G   E+ +++g + ++++WF  +e a a+++++s ++l+++    ++ ++++ f+ q++F +  +++++
  MMETSP1174-20130828|20673_1   8 RVLFGFGaESLSVSGST-LTSAWFIGRELAFAMGVTLSVSRLSSVANDLVSPLLAARFGTQSAFYFGLLICVL 79 
                  9****976999999876.6899***********************99999999999*******9876666653 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.4e-07
    TIGR00893 253 agllaslpaivgfvgmvlggilsdlllkkg.kslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagal..lvvaalaligalsvlll 398
                  +g ++ +p+ v +   + +g l d + k++ + l ++  +a+          ++   + s   + ++v+++   +++a ++w+ ++ v+++e +gl+ Gl+++l n+   ++P+vi ++ +++G  ++++  l++a l l +al+ lll
  MMETSP1174-20130828|20673_1 209 IGAIQGIPFTVSAFLTPIIGNLVDHFGKRQlWMLCSSLLLAVAH--------FILT-FSSVSPIPSFVCIGLAYSVVAGVIWPSVPCVVDPEFKGLGFGLLTSLQNVTLCLTPLVIAYLLEAYGKDNFRYpeLFMASLSLCAALMSLLL 348
                  45555566666666666677777777777633333333333333........2222.22333334455555555556999********************************************9887765578888888888887765 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   1.2   1.1e-09   7.7e-07     228     397 ..     171     339 ..     143     345 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.1e-09
    TIGR00883 228 vlglviatsvlfYllttylasYlkktaklglsaesallvlllali...llllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaa.vgiyllllal 397
                  + ++ i + +l+Y +    ++ +++ ++  ls e++ ++ ++ +i   + ++++p++g l d++G+r++ +l++ l++++a ++l ++   s+    + +++++ l+++++ gv+ + ++ +   e +  g++l  +l +v    ++ via  L a+ +d++  + ++++ l+l
  MMETSP1174-20130828|20673_1 171 GFVYLILHCMLVYGAILPFNNISSALLHARLSPEKVQYIGAIQGIpftVSAFLTPIIGNLVDHFGKRQLWMLCSSLLLAVAHFIL-TFSSVSP----IPSFVCIGLAYSVVAGVIWPSVPCVVDPEFKGLGFGLLTSLQNVTLCLTPLVIAYLLEAYGKDNFRyPELFMASLSL 339
                  444444444444544444445555555567788888888887776222456789**************76666666666664444.4443344....455666777778889*******************************9777788888888888765414455554444 PP

>> TIGR00792  gph: sugar (Glycoside-Pentoside-Hexuronide) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.1    0.0053       3.6     262     302 ..      42      82 ..      27      91 .. 0.74
   2 !   12.3   0.2   1.5e-05      0.01     256     341 ..     203     289 ..     201     292 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0053
    TIGR00792 262 lllialvaalisvlllPrlvkklgrkklfliglllavlgll 302
                   l+++ + +++  l+ P+l++++g + +f+ gll+ vl++ 
  MMETSP1174-20130828|20673_1  42 TLSVSRLSSVANDLVSPLLAARFGTQSAFYFGLLICVLSIS 82 
                  334445566667799********************999875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.5e-05
    TIGR00792 256 aelfsilllialvaalisvlllPr...lvkklgrkklfliglllav.lgllillvvssnlvlilvlailagillnlvtllvwvlvaDtvd 341
                  +e+++++++i+ +   +s++l+P    lv+ +g+++l++ ++ l + ++  il++ s + + ++v++ la+    +v +++w  v+ +vd
  MMETSP1174-20130828|20673_1 203 PEKVQYIGAIQGIPFTVSAFLTPIignLVDHFGKRQLWMLCSSLLLaVAHFILTFSSVSPIPSFVCIGLAYS---VVAGVIWPSVPCVVD 289
                  6778888999888888888887753338999*******9998665514555555555666667777666654...788888888777776 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.2   1.4e+02     131     181 ..      45      94 ..      33     105 .. 0.64
   2 !   14.5   0.5   5.3e-06    0.0036      38     105 ..     211     277 ..     167     327 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.2
    TIGR00900 131 lsqlvrslieivgPgiggllvatlgikaailvdavgflisallivsvripk 181
                  +s+l +    +v+P +++       ++  +l+ +  ++ sa++++ +  ++
  MMETSP1174-20130828|20673_1  45 VSRLSSVANDLVSPLLAARFGTQSAFYFGLLICV-LSISSAITLLCIEGDA 94 
                  4444444444888888888777777777666654.4566777777666555 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 5.3e-06
    TIGR00900  38 laalagllplvvvspiaGvlvDRldrkkvmvga.Dliravlvavlpfvallgleiwmvlvvalilsiaq 105
                   +  + ++++++++pi+G lvD + ++++ + +  l+ av+ ++l+f  +   +i+  +++ l  s+++
  MMETSP1174-20130828|20673_1 211 AIQGIPFTVSAFLTPIIGNLVDHFGKRQLWMLCsSLLLAVAHFILTFSSVS--PIPSFVCIGLAYSVVA 277
                  555667889999****************97766156677777777777655..8998888877777765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   2.6     0.027        18     112     183 ..       8      79 ..       4      89 .. 0.87
   2 ?    8.5   0.3   0.00026      0.18     303     398 .]     225     319 ..     198     319 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.027
    TIGR00895 112 RflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiipll 183
                  R+l g G  +l     +L+s +   r  a+++g+  +   +  +   l+++ll + fg +s f++g +i +l
  MMETSP1174-20130828|20673_1   8 RVLFGFGAESLSVSGSTLTSAWFIGRELAFAMGVTLSVSRLSSVANDLVSPLLAARFGTQSAFYFGLLICVL 79 
                  78888888888999999999999999999999999999999999999*******************777766 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00026
    TIGR00895 303 lllgaladrlgpk..vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                   ++g l+d +g++   ++  +ll av  +++++   s+   +   v++Gl++    +++    + +  ++ ++ g g + ++  +  ++ p+++++ll
  MMETSP1174-20130828|20673_1 225 PIIGNLVDHFGKRqlWMLCSSLLLAVAHFILTF---SSVSPIPSFVCIGLAYSVVAGVIWPSVPCVVDPEFKGLGFGLLTSLQNVTLCLTPLVIAYLL 319
                  47899******9954444456666766666666...555556677899***********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1711.86
//
Query:       MMETSP1174-20130828|20666_1  [L=1103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.51
# Mc/sec: 2854.59
//
Query:       MMETSP1174-20130828|20676_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.8   0.0      0.018   12.5   0.0    1.3  1  TIGR03735 PRTRC_A: PRTRC system protein A


Domain annotation for each model (and alignments):
>> TIGR03735  PRTRC_A: PRTRC system protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-06     0.018      74     134 ..      23      84 ..      11      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.3e-06
    TIGR03735  74 qipaslleeFveaAraalPnEvaawi.vwnseteslrlaelesieaspghikyerprledge 134
                  +  ++l+e+F  + r+  P   +a + ++++++++l +++++  e+++ ++ +  p+ +d+e
  MMETSP1174-20130828|20676_1  23 PQNKALVEAFRDIDRQLPPSPQSAVVdMFKDMDRDLNVLMRDLEEVTADTVVFGAPSRDDDE 84 
                  55678**************999998878****************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 361.03
//
Query:       MMETSP1174-20130828|20675_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.4   0.1      0.055   10.0   0.1    1.1  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   1.3e-05     0.055      17      86 ..      11      75 ..       3      82 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.3e-05
    TIGR03895 17 vegiapkcrgliiPifaddktaekisqldlaraielAveagaaiinisagqltdtgeaeellekavklcq 86
                 +++ia   ++l +P   d++ a+ +sq  l++ai+ A++a a ii      ++++++  +l+ +a+  c+
  MMETSP1174-20130828|20675_1 11 LPEIA--FSCLALPTIRDQQLAQLASQ--LTHAINAALKAKAVIITD-IVAPSSKSKIAHLFRNALAACR 75
                 56667..58899*******88888888..69**********999964.4456777777889999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|20677_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 184.78
//
Query:       MMETSP1174-20130828|20678_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-16   55.6   0.1    7.9e-16   55.3   0.1    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.5e-08   32.0   0.0    1.8e-08   31.7   0.0    1.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1   3.9e-19   7.9e-16     157     207 ..       4      54 ..       2      59 .. 0.93

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 3.9e-19
    TIGR00483 157 deekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykg 207
                  +++   e+k+e  ++l+++g+kp++v+fip s+++gdn+v+ks++apwykg
  MMETSP1174-20130828|20678_1   4 KQKTAYEIKEEFQKMLQMIGFKPKKVPFIPYSGFNGDNLVDKSDKAPWYKG 54 
                  6777789*******************************************9 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   8.6e-12   1.8e-08     148     197 ..       3      54 ..       2      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 8.6e-12
    TIGR02034 148 ydeevfeeikkdylalaekl..gvsdvtviPlsalkGdnvveksesmpWyeG 197
                  +++++  eik++++++ + +  + ++v +iP s+ +Gdn+v+ks++ pWy+G
  MMETSP1174-20130828|20678_1   3 FKQKTAYEIKEEFQKMLQMIgfKPKKVPFIPYSGFNGDNLVDKSDKAPWYKG 54 
                  56778889***********94445799************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 240.69
//
Query:       MMETSP1174-20130828|20681_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 673.48
//
Query:       MMETSP1174-20130828|20679_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-08   31.5   0.4    0.00019   18.8   0.1    2.6  2  TIGR02191 RNaseIII: ribonuclease III


Domain annotation for each model (and alignments):
>> TIGR02191  RNaseIII: ribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.7e-08   0.00019      41     218 ..     112     277 ..     110     278 .. 0.82
   2 !   10.3   0.0     2e-05     0.082     176     218 ..     334     375 ..     284     376 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.7e-08
    TIGR02191  41 GDavLelvvaeyLfkkfpkakeGeltklraklVseeslaelakelklgeflllgkgeeksggreresiladafEAligAiYldsglekarkfveklleerieeekeekkkkdyKtaLqelaqaekkvlpeYelikeegpahdkeFevevvvegeilgsgkgkskkeaeqaaAkaalek 218
                  GD++L+ ++a  L + +  +++ +l+++ a + s+ +la+  ++l l + ll     e++    +e   + ++EA +  +   ++++++ ++ + l++++ ++   ++  +++K+ L el  +        +     g ah + +++e++++ +  ++++g skk ae +aA a+l+k
  MMETSP1174-20130828|20679_1 112 GDKILGAAIAGELRS-HGLTEVDQLSRAYAVVSSNANLAANVDAL-LPNSLLAQIPMERR--LLQEHDCGTIVEACVDLVANAGNAAAIDELARYLVASVGTASAIAEVPTNPKSMLIELGGSL-------SSDLAGGSAHMPVYRAEATLG-DLCAEAQGGSKKGAERDAATAVLQK 277
                  999*******99966.77788999**9999999998998888888.88777777655555..3347788899***999999998899999998888888887776666999*******998743.......334457889*********988.5556*****************9997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 2e-05
    TIGR02191 176 eegpahdkeFevevvvegeilgsgkgkskkeaeqaaAkaalek 218
                    gpah + +++e+ ++ +  ++ +g+s k ae aaA a+l+k
  MMETSP1174-20130828|20679_1 334 AGGPAHMPVYRAEANLG-DLCAEVEGSSVKGAERAAAMAVLQK 375
                  5699**********988.5557*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1656.25
//
Query:       MMETSP1174-20130828|20682_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   17.3   0.0     0.0002   16.7   0.0    1.2  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.8e-08    0.0002     742     890 ..       7     176 ..       2     184 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.8e-08
    TIGR03443 742 tlvsyivpk.eekdeleelkaekdeeeeedkvvkglikyrklikdikeylkkklasyavPtvivpl.kklPlnPnGkvdk...PalpfPdtaqlaavakk...................esaeaeeeeltetekeirdlWlevlPnkpatiskd.dsffdlGGhsilatrlife 890
                   l+ ++vp  +  +el+ lk+++ +  e+  v      ++++   ++++  + l+ +avP  ++ + + lPl   Gkv +   P+++f + +      ++                    + +       e+ + ++  W++vl    a+i+++ dsf d+GG s+ a +++  
  MMETSP1174-20130828|20682_1   7 RLIGWVVPPpNVIQELDLLKENNRNCVESAAV----LYHERFSLVLRTHCERVLPQHAVPHAMLIMpHGLPLSSTGKVSRqglPRIDFSKPQPERWFRSNpphaihtntevlqhdkpagGRDDDLMVGCEEVIHVVQRAWAQVLGVPIASIKPEvDSFRDMGGDSLSALQVVRR 176
                  68888888844455565555444433333332....23445666789*************866665278*********9933344455444433333333677888889999977544323333333445666677889************98779**********99988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1663.06
//
Query:       MMETSP1174-20130828|20691_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|20689_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 548.80
//
Query:       MMETSP1174-20130828|20694_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 303.57
//
Query:       MMETSP1174-20130828|20692_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   19.0   0.0       0.19    9.0   0.0    2.7  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00087   16.2   0.1     0.0015   15.5   0.0    1.4  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
  ------ inclusion threshold ------
      0.016   11.6   0.0      0.039   10.3   0.0    1.6  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      0.073   10.0   7.0       0.59    7.0   0.0    3.0  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00019      0.19      11      70 ..      32      87 ..      22     104 .. 0.77
   2 !    7.0   0.0   0.00081      0.83     130     172 ..     283     325 ..     272     328 .] 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00019
    TIGR01661 11 lPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrl 70
                 +Pq   + ++r l+  +   e c +     t     yGf  + + + ae+a+  lnGl +
  MMETSP1174-20130828|20692_1 32 FPQDTKERDLRNLLIFLYGFEGCSMH----TSPEQVYGFARFCDSRSAEEAIGMLNGLNF 87
                 57777777777777777777777653....4444569********************976 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00081
    TIGR01661 130 skGvGfirfdkreeadraikalnGttPsgatepitvkfannPs 172
                  +  + f+ fd    +++ai +l G+t  +    + v+fa   +
  MMETSP1174-20130828|20692_1 283 ASPIAFVAFDSLLHSQKAIDELQGSTLPNHEGSLFVQFARRSC 325
                  55689*********************9999999*****98765 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06    0.0015     200     346 ..       3     153 ..       1     180 [. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-06
    TIGR01622 200 Nraakaatelsgdipnsiad..lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGl....elAGReikvglasD.vteesdaslaskfedsfdeseqsgldl.nteereqldekldrddekgsg 346
                  Nra k  ++ ++ ++ns+ +    + v ++  +  E +Lr++       e   ++  pe      yGF +F d+  a eA+  lNGl    ++A   i+ ++a+   t + + +  ++  + +++  qs +    t+ ++q+d+++ ++  ++  
  MMETSP1174-20130828|20692_1   3 NRAEKRPRTNEIRTRNSANEviVTIHVTGFPQDTKERDLRNLLIFLYGFEGCSMHTSPEQ----VYGFARFCDSRSAEEAIGMLNGLnfdpDIADSLIRATMAKRnLTLRREHTNRQRHPNAIQNYTQSPQYRdPTNIEAQYDQRVIHGRYNTMM 153
                  788888888888888887762246777888888999999999888888999999999987....8*********************744556999999999988767777777778888888888777765441466677777777766666654 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.8e-05     0.039     299     386 ..      27     111 ..      10     141 .. 0.79
   2 ?   -2.3   0.0      0.24   2.4e+02     469     489 ..     288     308 ..     279     325 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.8e-05
    TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLn.vkrAtvgakqatieken 386
                  +++ + P+d k+  +++LL     L +F+    ++t   + y+F  + ds  ++ Ai  LnG++   ++     rAt+ +++ t+ +e 
  MMETSP1174-20130828|20692_1  27 IHVTGFPQDTKERDLRNLLIF---LYGFEGC-SMHTSPEQVYGFARFCDSRSAEEAIGMLNGLNFDPDIADsLIRATMAKRNLTLRREH 111
                  788999999999999999864...6677754.578899999**********************99877654156888888888877665 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.24
    TIGR01642 469 FleyadvasaekAreelnGrk 489
                  F+ + +   ++kA +el+G  
  MMETSP1174-20130828|20692_1 288 FVAFDSLLHSQKAIDELQGST 308
                  555555555555555555543 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00058      0.59     130     155 ..      63      88 ..      56     113 .. 0.80
   2 ?   -5.2   5.1       2.8   2.9e+03     404     445 ..     125     168 ..      94     260 .. 0.34
   3 ?    4.4   0.0    0.0036       3.7     221     260 ..     286     323 ..     249     328 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00058
    TIGR01628 130 gYgfvhfedeesAkeAieklNgvlln 155
                   Ygf +f d  sA+eAi  lNg+  +
  MMETSP1174-20130828|20692_1  63 VYGFARFCDSRSAEEAIGMLNGLNFD 88 
                  69999999999999999999998654 PP

  == domain 2    score: -5.2 bits;  conditional E-value: 2.8
    TIGR01628 404 aqqqavvt.qavkqqlasqplnfkinqmmlstqnpskpea.pna 445
                  +q ++++  ++ ++q++++ ++ + n+mm s  +p++    +n+
  MMETSP1174-20130828|20692_1 125 TQSPQYRDpTNIEAQYDQRVIHGRYNTMMNSDFTPTAAMGtANS 168
                  22233333233333333333332222333222222211111111 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0036
    TIGR01628 221 fafvnyekaedAkkAveelngkkitlaatgkilyVgraqk 260
                   afv++++    +kA++el+g  ++  +++  l+V+ a++
  MMETSP1174-20130828|20692_1 286 IAFVAFDSLLHSQKAIDELQGSTLP--NHEGSLFVQFARR 323
                  5777777777777777777777777..5556666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 962.05
//
Query:       MMETSP1174-20130828|20696_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|20700_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   18.1   0.0    0.00012   18.1   0.0    1.0  1  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
      0.002   13.7   0.0     0.0022   13.5   0.0    1.0  1  TIGR00917 2A060601: Niemann-Pick C type protein family


Domain annotation for each model (and alignments):
>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.9e-08   0.00012     285     340 ..      17      72 ..       2      73 .] 0.64

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.9e-08
    TIGR00921 285 veavkrtgkAvliallttvlGFlalllsvlpmlkelgvllvlGlilaylltllvlp 340
                   ++ k+t +Av  +  tt++ F+a  +s l  ++ +g      + + y+ t++++p
  MMETSP1174-20130828|20700_1  17 SHTWKHTVQAVFNTSFTTAMAFIATGASPLMPISTFGYYAATAIAMNYVFTITLTP 72 
                  34556667777777777777777777777777777777777777777777777666 PP

>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-06    0.0022     682     739 ..      12      69 ..       3      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-06
    TIGR00917 682 leqqlarvLakvgPsilLaslseslafllGalskmPavrafslyaalavliDfLLqit 739
                  l ++l+++  +   +++ +s++ ++af+  + s +  + +f +yaa a+ +++++ it
  MMETSP1174-20130828|20700_1  12 LRHRLSHTWKHTVQAVFNTSFTTAMAFIATGASPLMPISTFGYYAATAIAMNYVFTIT 69 
                  5678888888999999***********976666666699**************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|20701_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|20702_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.56
# Mc/sec: 636.79
//
Query:       MMETSP1174-20130828|20708_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 643.02
//
Query:       MMETSP1174-20130828|20706_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-12   43.0   0.0    6.6e-07   26.7   0.0    2.7  2  TIGR01762 chlorin-enz: chlorinating enzymes
    7.6e-07   26.5   0.0    1.3e-06   25.8   0.0    1.3  1  TIGR02408 ectoine_ThpD: ectoine hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.2e-10   6.6e-07      11     169 ..     242     390 ..     239     406 .. 0.79
   2 !   13.1   0.0   4.6e-06    0.0094     209     252 ..     411     453 ..     390     464 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.2e-10
    TIGR01762  11 feknGfiGpftlyepeelkelwkeirldlldreaapyddl.ldvaianydrhldvdllashisrkeivdrvesilGp.nvlcwrteffpkypGdeGtdwhqadtfaeasGkpklvwpeseefggeitvwtaftdatrenGclkvipGthnslnydetrrlt 169
                  + ++Gf+ p+++ +  e  e+     l+ ++ + a+       +    +  hl     a+ + ++++v  v+ +lG+ +v  w ++   k p          +++ ++  +    +    +    +t+w+a++da+ enGcl+ + G+h s      r++ 
  MMETSP1174-20130828|20706_1 242 YARDGFVSPISVLSSAEAAETMAG--LETYEENVAARGGAvPLTGDDRFRLHLLCPWAAQLVRHPRLVRAVQEVLGTdDVAVWSSDLNVKEP----------ESLSHFTRHQDAAYMGLTPCDAVVTAWIALSDAQVENGCLECVKGSHLSGPVHHDRNMG 390
                  678999999999999999998764..56667666665522123344455569999999******************835899***9999988..........56677777777777777889999************************988777777775 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.6e-06
    TIGR01762 209 vplemkaGqfiiftsrlmhaslpnsseskirlGyaaryvpsdvk 252
                  v + +kaG+  +     +h+s pn+s++  r+G a ry+ ++v+
  MMETSP1174-20130828|20706_1 411 VAMPLKAGEASLHAGLTVHTSSPNASQE-RRVGLAVRYIAARVR 453
                  78999*******************9976.5************97 PP

>> TIGR02408  ectoine_ThpD: ectoine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.4e-10   1.3e-06      25     169 ..     242     378 ..     239     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.4e-10
    TIGR02408  25 yerdGflvlenlvaddevaalraelerliadpavdrdeeaiveeqsnavrsifevhllsevlarlvrdervvnaarqilGs.dvyvhqsrinvkpGfkgtgfywhsdfetwhaedGl.palravsvsialtenyetnGslmvvpGsh 169
                  y rdGf+   +++++ e a   a le   ++  v ++  a+   + +     f  hll +  a+lvr +r+v a +++lG+ dv v  s +nvk   +   f  h d     a  Gl p    v++ ial++    nG l  v Gsh
  MMETSP1174-20130828|20706_1 242 YARDGFVSPISVLSSAEAAETMAGLETYEEN--VAARGGAVPLTGDD----RFRLHLLCPWAAQLVRHPRLVRAVQEVLGTdDVAVWSSDLNVKEPESLSHFTRHQDA----AYMGLtPCDAVVTAWIALSDAQVENGCLECVKGSH 378
                  5566666666666666666666666655554..55555555444433....3889*************************7369**********************96....455772455556788*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 1422.84
//
Query:       MMETSP1174-20130828|20707_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 1963.34
//
Query:       MMETSP1174-20130828|20711_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 460.18
//
Query:       MMETSP1174-20130828|20712_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|20713_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-81  270.7   0.2    1.7e-80  268.3   0.1    1.8  1  TIGR01496 DHPS: dihydropteroate synthase
     0.0014   15.1   0.1     0.0017   14.8   0.1    1.2  1  TIGR00284 TIGR00284: dihydropteroate synthase-related protein


Domain annotation for each model (and alignments):
>> TIGR01496  DHPS: dihydropteroate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.3   0.1   8.1e-84   1.7e-80       3     257 ..       1     277 [.       1     278 [. 0.91

  Alignments for each domain:
  == domain 1    score: 268.3 bits;  conditional E-value: 8.1e-84
    TIGR01496   3 mgilNvTpDSfsdggkflskk.............kalehaeklleeGadiiDvGgestrPgaeevspeeEleRvvpvikalreelsd.vkiSvDtykaevaeaaleagvdiiNDvsglk.dpemlevvaeadvelvlmhskgtpetmqeev..ky..edvveevlrfleerveelleagvakekivlDpGigFaktleenlellkr..leelkalglplLvgvSrKsfigallg.teaeerlegtlalsllavqkGakilRVHdvketrdalkvlea 257
                  mgilNvTpDSfsdgg+f+ ++             +a+++  +l+eeGa+iiDvGgestrP aeev +++E++Rvv+vi+ lr +++d v iS+Dt++a vaeaal+ag+d++NDvsg++ d +m+ ++ +  v+++lmh++gtp+tmq     ky  + v+e vlr le+rve++l+ag+ ++ i++DpGigFak+ e+n+ell+   l++l++   p+ vg+SrK fig+l +  e+++r+ gt a+s++a   Ga+++RVH+v++tr++l+v++a
  MMETSP1174-20130828|20713_1   1 MGILNVTPDSFSDGGQFSMEEqtgresasevhiaSAVARGVALVEEGAKIIDVGGESTRPMAEEVAVKDEIKRVVEVIRGLRGAVPDdVVISIDTRRAVVAEAALDAGADLVNDVSGGTfDSDMIPLLVQRCVPVILMHMRGTPSTMQLPEnlKYepHGVAEGVLRELEDRVEACLKAGLPRWLIMVDPGIGFAKSSEQNMELLHPrvLRRLRESLAPVVVGASRKGFIGQLCDePEPSKRDVGTSAVSCIAGIGGASVIRVHNVEATRQVLSVMDA 277
                  9**************997543222222222222267888899*******************************************655***********************************************************965422778889*********************************************86669************************9889*************************************997 PP

>> TIGR00284  TIGR00284: dihydropteroate synthase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   8.3e-07    0.0017     172     242 ..      41     122 ..      26     191 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.3e-07
    TIGR00284 172 irrlrkgadmvalGlvsne.........ddadkvkekvkialdll..dspvsvdteslkelieavkaGaslvlsvdaenlee 242
                  +  +++ga ++++G  s+          d+ ++v e ++ ++ +   d ++s+dt     +  a+ aGa+lv  v  ++++ 
  MMETSP1174-20130828|20713_1  41 VALVEEGAKIIDVGGESTRpmaeevavkDEIKRVVEVIRGLRGAVpdDVVISIDTRRAVVAEAALDAGADLVNDVSGGTFDS 122
                  5678899999999976654110011000444444455566666667688999********************9999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 780.94
//
Query:       MMETSP1174-20130828|20716_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|20721_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.9   0.0     0.0019   15.7   0.0    1.1  1  TIGR00138 gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB


Domain annotation for each model (and alignments):
>> TIGR00138  gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.6e-07    0.0019      31      62 ..      28      58 ..      21      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.6e-07
    TIGR00138 31 lldslkllellkeskkkviDiGsGaGfPGipl 62
                 +ld l++   l   ++ ++DiGsG G+P+++ 
  MMETSP1174-20130828|20721_1 28 ILDALNMHCNLGA-ESLLLDIGSGRGLPSLIA 58
                 6777777666654.5689***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|20723_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1174-20130828|20724_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 164.99
//
Query:       MMETSP1174-20130828|20725_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.4   0.4     0.0069   13.2   0.3    1.0  1  TIGR03286 methan_mark_15: putative methanogenesis marker protein 15


Domain annotation for each model (and alignments):
>> TIGR03286  methan_mark_15: putative methanogenesis marker protein 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   1.7e-06    0.0069     199     284 ..       4      91 ..       2     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-06
    TIGR03286 199 veaigvtg.ygrfligehfdadliqeeltvnskgavy.ladkqkgeatvidiggmdnkaisvldgipdnftmggicagasgrfleita 284
                  + a+g  g +g f ig  ++   ++e l vn  ga   +  +  g  +++ +g +d    sv  +i +  t+g +  g  g f   ++
  MMETSP1174-20130828|20725_1   4 MSAVGSGGpHGVFPIGATLSVPAMNELLGVNFLGASAsVLFNTPGLRSLLSMGVIDVSKRSVIKAISKGHTVGIVADGINGMFASAIS 91 
                  67889888689*********************99864155677899***********************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 543.19
//
Query:       MMETSP1174-20130828|20727_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 294.15
//
Query:       MMETSP1174-20130828|20726_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.5   0.4     0.0018   15.5   0.3    1.9  2  TIGR00383 corA: magnesium and cobalt transport protein CorA


Domain annotation for each model (and alignments):
>> TIGR00383  corA: magnesium and cobalt transport protein CorA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3     0.039   1.6e+02     169     187 ..     181     199 ..     103     252 .. 0.46
   2 !   15.5   0.3   4.4e-07    0.0018     228     295 ..     285     356 ..     266     372 .. 0.62

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.039
    TIGR00383 169 sgedselldeilslrkell 187
                  +ge+++l ++i+ + + l 
  MMETSP1174-20130828|20726_1 181 EGEQDSLTNRIHPVLNLLH 199
                  3333444444444444333 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 4.4e-07
    TIGR00383 228 lqlleiietyrellss...lmdlylslvsikmNeimkiltvvstifipltfiagvYGMNFkf.mPelewkyG 295
                  + +   +e +r  +s+     ++ l +  +++     +++v+s+ +   +fi++++GMN k+   e ++ +G
  MMETSP1174-20130828|20726_1 285 STIATNLEHLRLEISNaedFNNMKLDTARNRLLTADTLFSVISVCLTLGSFIGSIFGMNLKNgFEEDNYMFG 356
                  44444444444444440004444444444444445569*********************9952445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 1137.35
//
Query:       MMETSP1174-20130828|20732_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|20728_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 845.71
//
Query:       MMETSP1174-20130828|20731_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 2367.55
//
Query:       MMETSP1174-20130828|20733_1  [L=783]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.9e-223  739.3   0.0   1.4e-222  738.7   0.0    1.2  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
   1.4e-143  477.7   0.8   1.1e-142  474.8   0.5    1.9  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    1.7e-22   77.7   0.2    2.5e-20   70.6   0.1    2.3  2  TIGR02065 ECX1: exosome complex exonuclease 1
    2.8e-06   24.0   0.0    4.3e-06   23.4   0.0    1.2  1  TIGR00717 rpsA: ribosomal protein S1
    3.3e-06   24.3   0.4    8.7e-05   19.7   0.0    2.8  3  TIGR01966 RNasePH: ribonuclease PH
    4.1e-05   19.9   0.0      6e-05   19.3   0.0    1.1  1  TIGR02063 RNase_R: ribonuclease R
     0.0007   15.8   0.0      0.001   15.3   0.0    1.1  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
     0.0031   13.9   0.0     0.0052   13.1   0.0    1.3  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  738.7   0.0  2.7e-225  1.4e-222       4     688 ..      55     759 ..      52     760 .. 0.95

  Alignments for each domain:
  == domain 1    score: 738.7 bits;  conditional E-value: 2.7e-225
    TIGR03591   4 greltletGklarqadgavvvklgdtvvlvtvvaakeakegvdflPLtvdyqeklyaaGkipGgffkREgrpsekeiLtsRliDRpiRPlFpegfrnevqvvatvlsvdeenepdilaligasaalaisdiPfegpvaavrvgli..dgeyvlnptveelekskldlvvagtkeavlmvEseakelseeemleaiefgheeikevieaieelakevgkekleveakeedeelkkkveelaeekelkealkieekqereealeevkeevleelaeeeeeeeeeeeekeikellkelekklvRerilkekkRidgRklkeiRpisievgvlpraHGsalFtRGetqalvvvtLgtekdeqiidelegeekkrfllhYnfPpysvgevgrvrspkRReiGHgkLaeralkavlPseeefpYtiRvvseileSnGSsSmasvCgssLalmdaGvpikapvaGiamGLikeede...kvavLsDilgdEDhlGDmDfKvaGtekgitalqmDiKiegiteeilekaleqakegRlhiLdkmekvisepreelseyaPrietikinkdkireviGkgGkvireiieetgak.idieddGtv.kiaaadkeaaekakklieeitae...........vevgk.vyegkvvkiadfgafvellpgk....dglvhiSelaeervekvedvlkegdevkvkvleidkkgrvklsrka 688
                  ++ +++etG + +qa+gav+ ++g+tvv +t++a++ a  ++df+PL+vdyqe++ aaG   Gg++kR+grps++eiL+sR+iDRp+RP+ +eg+++++q+++ vls+d ++ pd la++ga+a+la+sdiP ++pvaav+++     ge ++np+ ++l+k++l++++agtk+ vlm+E+ a+  +e++++ea+e+ h+++++++ a e++a   +kek+  +  +  ++lk+++ +++  ++++++l++++ ++  + +++ ++e ++ +ae +++  +e+ e+ +k ++k+l  + +Re + +++kR dgR+++e+Rpi+i+v+vl ++HGsalFtRGetqa+++vtLg +++eq+ ++l+g+++krf+l+Y+fPp svgevgr+++++RRe+GHg+Laeral + +P++ +fpY++Rv s i+eS GSsSmasvCg+sLa+mda vp+++ vaG+amGLi +ede     ++L+Dilg+ED+lG mDfKvaG ++gi+a+q+DiK eg++ e+l+kaleqa+ +Rlh+L++m+k+isep++el e++Pr++t+ i    + ++iG+gGkvir+iie++g + + ++d+  v +i++ ++e++e+ak+l+e+i+a+           +evg+  ++++vv++++fg fv+l ++k    +glvhiSel++erv+++   +k g+ + v v+ +  +g+++lsrka
  MMETSP1174-20130828|20733_1  55 SNVIKFETGVIGKQANGAVMTQSGETVVYTTACATD-APGDFDFIPLRVDYQERFSAAGLTKGGYLKRDGRPSDDEILVSRFIDRPLRPMIAEGWTHDTQLLSWVLSYDGQTVPDSLAICGAAASLALSDIPLQKPVAAVELCDDpeTGELIVNPNRKQLAKAELQMMLAGTKDGVLMIEGFANFAPESRIIEAVETCHSAVRKICLALEDWAPPNKKEKRMDTLMAVPAALKEALYAELG-DRVTAMLQLTDPNAGGKDTSAGRSENMALCAEAVAKYGTEYGETPVKVAFKKLCGRKMRELVRDTGKRCDGRSVTEVRPIDIDVRVLKHTHGSALFTRGETQAIATVTLGDANMEQKTEDLDGSSQKRFYLQYSFPPSSVGEVGRFGGVGRREVGHGNLAERALLPSIPKRVDFPYSMRVESLITESSGSSSMASVCGGSLAMMDAAVPLTRMVAGVAMGLILDEDEgvdPPIILTDILGMEDALGTMDFKVAGDAEGISAFQLDIKCEGLEVEVLRKALEQARVARLHVLGEMKKCISEPNTELPETVPRMMTLPITLASVPKIIGSGGKVIRSIIEDYGLQsLAVSDETLVaTISGFNSERMEAAKALVEKIVADskpreaysgplPEVGEeFFKSEVVSVKNFGLFVKLAGDKypdlEGLVHISELHTERVQNIMGFMKPGNIIDVMVIGVK-DGKLSLSRKA 759
                  56799*****************************96.55669****************************************************************************************************9863357*******************************************************************9999988888999***********9.88999999**9********************9999999999****************************************************************************************************************************************************************************************99665679************************************************************************************************************75499****998468899****************862222222222245664256889*************866544449*********************************9.6*******97 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.8   0.5  2.2e-145  1.1e-142       8     718 ..      47     755 ..      42     757 .. 0.89

  Alignments for each domain:
  == domain 1    score: 474.8 bits;  conditional E-value: 2.2e-145
    TIGR02696   8 vidngkfgtrtirfetgrlarqadgsvvaylddetmllsattaskkpkdeldffpltvdveermyaagkipgsffrregrpseeailacrlidrplrpsfvkglrnevqvvvtvlslnpdelydvvainaasastqlaglpfsgpiggvrlalied.gqwvafptveeleeavfdlvvagrvledgdvaimmveaeatektlelvkggakapteevvaegleaakpfikvlcraqadlaekaaketee...fplfldyeddvyeaveeavkdelekvltiadkqereeaedelkekvkeklaeele.erekelsaaykavlkklvrervlkekvridgrgltdirslsaeveviprvhgsalfergetqilgvttlnmlkmeqqidslspvtskrylhhynfppystgetgrvgspkrreighgalaeralvpvlpsreefpyairqvsealgsngstsmgsvcastlsllnagvplkapvagiamglisdevdgetryvaltdilgaedalgdmdfkvagtrefvtalqldtkldgipaevlaealkqakdarlaildvlaeaidspd.elsetaprviavkipvdkigevigpkgkvinsiqdetgae.isieddgtv.yigaadgdsaeaaraainaian...pt......lpevgerfl.gtvvkttafgafvsll....pgkdgllhiseirkladgkrvekvedvlsvgekikveiadiddrgklsl 718
                  ++d  + g+++i+fetg + +qa+g+v++   +et++ ++++a++ p  ++df+pl vd +er  aag   g +++r+grps++ il+ r+idrplrp + +g   + q++  vls + +++ d +ai +a+as  l+ +p+  p++ v l   ++ g+ ++ p+ ++l++a +++++ag    ++   ++m+e            g a+   e+ + e +e+ ++ ++++c a +d a    ke++    + +    ++  y+ + ++v++ l+     a+ ++ ++  +e ++  +e++a+  +   e+ ++ a+k +  + +re v + ++r dgr +t++r+++++v v+   hgsalf rgetq +   tl   +meq+ + l   ++kr+  +y fpp s+ge+gr g   rre+ghg+laeral+p +p r +fpy++r  s    s gs+sm svc  +l++++a vpl  +vag+amgli de +g    + ltdilg edalg mdfkvag  e ++a+qld k +g+  evl +al+qa+ arl++l  ++++i  p+ el et pr++++ i +  + ++ig  gkvi si ++ g + +++ d+  v  i+  +++  eaa+a ++ i+    p+      lpevge+f+   vv    fg fv l     p  +gl+hise++     +rv+++   ++ g+ i v +  + d gklsl
  MMETSP1174-20130828|20733_1  47 TVDLSDDGSNVIKFETGVIGKQANGAVMTQ-SGETVVYTTACATDAPG-DFDFIPLRVDYQERFSAAGLTKGGYLKRDGRPSDDEILVSRFIDRPLRPMIAEGWTHDTQLLSWVLSYDGQTVPDSLAICGAAASLALSDIPLQKPVAAVELCDDPEtGELIVNPNRKQLAKAELQMMLAGT---KD--GVLMIE------------GFANFAPESRIIEAVETCHSAVRKICLALEDWAPPNKKEKRMdtlMAVPAALKEALYAELGDRVTAMLQLTDPNAGGKDTSAGRSENMALCAEAVAKYGTeYGETPVKVAFKKLCGRKMRELVRDTGKRCDGRSVTEVRPIDIDVRVLKHTHGSALFTRGETQAIATVTLGDANMEQKTEDLDGSSQKRFYLQYSFPPSSVGEVGRFGGVGRREVGHGNLAERALLPSIPKRVDFPYSMRVESLITESSGSSSMASVCGGSLAMMDAAVPLTRMVAGVAMGLILDEDEGVDPPIILTDILGMEDALGTMDFKVAGDAEGISAFQLDIKCEGLEVEVLRKALEQARVARLHVLGEMKKCISEPNtELPETVPRMMTLPITLASVPKIIGSGGKVIRSIIEDYGLQsLAVSDETLVaTISGFNSERMEAAKALVEKIVAdskPReaysgpLPEVGEEFFkSEVVSVKNFGLFVKLAgdkyPDLEGLVHISELH----TERVQNIMGFMKPGNIIDVMVIGVKD-GKLSL 755
                  67888899*****************99885.789*9999999999986.6**************************************************************************************************99876554699******************9994...22..345655............44455557777889******************97766665431114455678899999999999999999988899999998888888888888887655267899***************************************************************************************************************************************************************************************************************************************************************975899***********************************8626676666553588889999999999998887512243333333589***98725699999*******9633336779******653....5899***************9999976.99998 PP

>> TIGR02065  ECX1: exosome complex exonuclease 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0067       3.4      20     168 ..      57     209 ..      50     259 .. 0.68
   2 !   70.6   0.1   4.9e-23   2.5e-20       3     211 ..     356     577 ..     354     594 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0067
    TIGR02065  20 pvkievGvl.kradGsallelGatkivaavyGPreahprhlqkpdravlrvrynmapfsv..derkrPaPdrreieiskvirealepailvekfPrtaidvfvevlqadagtrvasl..t..aaslaladaGipmrdlvvgvavGk..vdgkvvldls 168
                   +k e Gv+ k+a+G+ + + G+t +v +     +a   +   p r   + r+  a ++     ++   P+  ei +s+ i   l+p i +e +      +   vl  d+ t   sl     aaslal+d  ip++  v++v        g+++++ +
  MMETSP1174-20130828|20733_1  57 VIKFETGVIgKQANGAVMTQSGET-VVYTTACATDAPGDFDFIPLRVDYQERFSAAGLTKggYLKRDGRPSDDEILVSRFIDRPLRPMI-AEGWTH-DTQLLSWVLSYDGQTVPDSLaiCgaAASLALSD--IPLQKPVAAVELCDdpETGELIVNPN 209
                  588999998456777766666665.555566677777788888888888889999888874223455679999*************976.566654.345677788888888655442242255666655..88888888876654113455555554 PP

  == domain 2    score: 70.6 bits;  conditional E-value: 4.9e-23
    TIGR02065   3 iledglredGrkpdelrpvkievGvlkradGsallelGatkivaav.yGPreahprhlqkpdrav..lrvrynmapfsvderkr.PaPdrreieiskvirealepailve.kfPrtaidvfvevlqadagtrvasltaaslaladaGipmrdlvvgvavGkvdgk........vvldlseeedkyGeadlPlailPklkeitllqldGd...ltedefkqaldla 211
                  + + g+r dGr+  e+rp+ i+v vlk++ Gsal+  G+t+++a+v  G  +++++   +   +   + ++y   p sv e  r  +  rre+    + + al p+i     fP + + v   + ++ +++ +as+   sla+ da +p+  +v+gva+G + ++        ++ d+  +ed  G  d+ +a   + + i  +qld +   l  + +++al+ a
  MMETSP1174-20130828|20733_1 356 VRDTGKRCDGRSVTEVRPIDIDVRVLKHTHGSALFTRGETQAIATVtLGDANMEQKTEDLDGSSQkrFYLQYSFPPSSVGEVGRfGGVGRREVGHGNLAERALLPSIPKRvDFPYS-MRVESLITESSGSSSMASVCGGSLAMMDAAVPLTRMVAGVAMGLILDEdegvdppiILTDILGMEDALGTMDFKVA--GDAEGISAFQLDIKcegLEVEVLRKALEQA 577
                  67889****************************************9457777777766554444411457899******8877625689******************865379987.46777788999********************************97432223344435669**********999887..566777777777551113345556666555 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.4e-09   4.3e-06     276     344 ..     690     759 ..     671     773 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.4e-09
    TIGR00717 276 ikgkvtnladyGvfveiee....giEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslslKq 344
                   k  v+ ++++G fv ++     ++EGlvh+sEl  ++++++   ++k G+ ++v+v+ +  + +++sls K 
  MMETSP1174-20130828|20733_1 690 FKSEVVSVKNFGLFVKLAGdkypDLEGLVHISELH-TERVQNIMGFMKPGNIIDVMVIGV--KDGKLSLSRKA 759
                  68899**********9985333379********97.667888999************987..57888888775 PP

>> TIGR01966  RNasePH: ribonuclease PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.062        32      20      43 ..      66      89 ..      53      95 .. 0.78
   2 !   19.7   0.0   1.7e-07   8.7e-05       1      43 [.     362     404 ..     362     455 .. 0.91
   3 ?   -2.9   0.0       1.3   6.7e+02     139     165 ..     500     515 ..     472     549 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.062
    TIGR01966 20 lkhaeGsvlvevGdtkvlctasve 43
                  k+a+G+v+++ G+t v  ta  +
  MMETSP1174-20130828|20733_1 66 GKQANGAVMTQSGETVVYTTACAT 89
                 4789***********999888654 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.7e-07
    TIGR01966   1 rsdGrkedqlrpvklereflkhaeGsvlvevGdtkvlctasve 43 
                  r dGr   ++rp++++ + lkh++Gs l + G+t+ + t+++ 
  MMETSP1174-20130828|20733_1 362 RCDGRSVTEVRPIDIDVRVLKHTHGSALFTRGETQAIATVTLG 404
                  88************************************99875 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.3
    TIGR01966 139 aikklekkkvlkeeplkeavaavsvGi 165
                  a           + pl+ +va v++G+
  MMETSP1174-20130828|20733_1 500 A-----------AVPLTRMVAGVAMGL 515
                  3...........346666666666665 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.2e-07     6e-05     627     665 ..     684     726 ..     648     730 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.2e-07
    TIGR02063 627 kiGee.fegvissvtsfGlFveLeent...ieGLvhissLkdd 665
                   +Gee f+  ++sv +fGlFv+L+  +    eGLvhis+L+ +
  MMETSP1174-20130828|20733_1 684 EVGEEfFKSEVVSVKNFGLFVKLAGDKypdLEGLVHISELHTE 726
                  588873699**************98653338********9865 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-06     0.001     574     614 ..     684     728 ..     648     732 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-06
    TIGR00358 574 kvg.eeFegvissvtrfGlfvrldeng...idglikistlendyy 614
                  +vg e F+++++sv +fGlfv+l   +   ++gl++is l+ + +
  MMETSP1174-20130828|20733_1 684 EVGeEFFKSEVVSVKNFGLFVKLAGDKypdLEGLVHISELHTERV 728
                  6885568****************876423389********98765 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     1e-05    0.0052     218     272 ..     618     673 ..     588     678 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1e-05
    TIGR03319 218 RiiGreGRniralEtltGvd.liiDdtPeavilsgfdpvRreiArlalekLiaDGr 272
                  +iiG  G+ ir++ +  G++ l + d   + ++sgf+  R e A+  +ek++aD +
  MMETSP1174-20130828|20733_1 618 KIIGSGGKVIRSIIEDYGLQsLAVSDETLVATISGFNSERMEAAKALVEKIVADSK 673
                  79**********9999998648899999999**********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.68u 0.20s 00:00:00.88 Elapsed: 00:00:00.55
# Mc/sec: 1879.04
//
Query:       MMETSP1174-20130828|20735_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 963.52
//
Query:       MMETSP1174-20130828|20743_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|20744_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-23   81.5   0.0    1.2e-10   39.2   0.0    3.3  3  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.7e-12   6.9e-09      18      63 ..     101     145 ..      93     149 .. 0.86
   2 !    4.7   0.0    0.0012         5      61      95 ..     173     207 ..     168     225 .. 0.82
   3 !   39.2   0.0   2.9e-14   1.2e-10      86     160 ..     284     359 ..     265     360 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.7e-12
    TIGR00093  18 vvkdllek.lrgkklaavGRLDrdseGlllltddgelqhrlthpeke 63 
                  +++d+l+  +    +  vGRLD++++Glll+tddg l++rl++p ++
  MMETSP1174-20130828|20744_1 101 TIYDMLPSgF--PPVPHVGRLDKETCGLLLFTDDGGLNARLMDPTHH 145
                  6677777755..67788***************************997 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0012
    TIGR00093  61 ekevektYlvqvegsvtdedlealrkGvkledekt 95 
                  +++v k Y v+veg   +++  ++r+G+  ++ + 
  MMETSP1174-20130828|20744_1 173 RRHVRKLYRVKVEGLLWRTADLDWRNGLPSDGRVM 207
                  6799***********************98766655 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 2.9e-14
    TIGR00093  86 kGvkledektk.paklklikepelktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvslegLeeGewreLt 160
                  +Gv++  +++    + +  +e      ++v l+eG+nrq+rRl+   gl v+ L+Rv++g + l  L+ G+ r L+
  MMETSP1174-20130828|20744_1 284 AGVTIPFTEQDdENEEEGETERGSTLVIEVELYEGKNRQIRRLCKRAGLVVVSLQRVELGPLMLGPLKCGDARSLS 359
                  5555544333313444444455545599*********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1548.20
//
Query:       MMETSP1174-20130828|20749_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1037.71
//
Query:       MMETSP1174-20130828|20756_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   11.3   6.0      0.065   11.2   4.2    1.1  1  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
       0.16    8.7   8.0       0.18    8.6   5.5    1.0  1  TIGR00414 serS: serine--tRNA ligase
        0.2    8.3   6.7       0.21    8.3   4.7    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
       0.23    9.1   2.7       0.36    8.5   1.9    1.4  1  TIGR01025 rpsS_arch: ribosomal protein S19
       0.68    6.9   7.2       0.71    6.9   5.0    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.72    6.7   7.3       0.96    6.3   5.1    1.3  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family
        1.1    5.3   5.0        1.2    5.2   3.5    1.0  1  TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
          2    4.4  10.3        2.2    4.3   7.1    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.2   0.00013     0.065      33      94 ..      24      85 ..      10      87 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
    TIGR01837 33 keGekaekrakkrvdksvdalreevktkleqvrdkvqrnldklekafdervesvlnrLniPs 94
                  e +ka ++ +k++d+ + + re+ k++l+q r+  +++ld+ e+a ++  ++++++L++ +
  MMETSP1174-20130828|20756_1 24 AEHKKAARKLQKELDDYAAKQRENLKQRLKQKREALTKKLDEDEDASEDEKQDAVSKLDLEE 85
                 4555667777777777777888***********************************98765 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.5   0.00034      0.18      41     105 ..      14      80 ..       3      85 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00034
    TIGR00414  41 kllskieelqkkrnelskeigkkkaekkdk.ieelkkelkelkeelee.leaelkeleeeleekllk 105
                  +++  ++ l++++++ +++++k+ ++ ++k  e+lk++lk+++e l++ l+++ +++e+e ++ ++k
  MMETSP1174-20130828|20756_1  14 AEEDSVRDLNAEHKKAARKLQKELDDYAAKqRENLKQRLKQKREALTKkLDEDEDASEDEKQDAVSK 80 
                  56778999************99666665554788999999999998752566666666666666655 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.7    0.0004      0.21     142     194 ..      28      79 ..      10      87 .] 0.72

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0004
    TIGR03794 142 gklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdeadkaea 194
                  + +r+ ++ L  + akqr+ l+++l++ kr +++ +  + e++++de++ a  
  MMETSP1174-20130828|20756_1  28 KAARKLQKELDDYAAKQRENLKQRLKQ-KREALTKKLDEDEDASEDEKQDAVS 79 
                  456677788999************999.8888888877777666666555443 PP

>> TIGR01025  rpsS_arch: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   0.00071      0.36      25      62 ..      38      74 ..      19      84 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00071
    TIGR01025 25 kllparqrrklkrGltrkqkkllkklrkakkeatkgkk 62
                   ++a+qr +lk+ l++k+++l kkl      a++ +k
  MMETSP1174-20130828|20756_1 38 DDYAAKQRENLKQRLKQKREALTKKLDEDED-ASEDEK 74
                 4589**********************98554.444344 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.0    0.0014      0.71      57     130 ..      15      79 ..       5      87 .] 0.45

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0014
    TIGR03752  57 pedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqaklee 130
                   ed +r+l ae k+  ++l+k  ++  +   + e+lk+r ++ +e ++++l+        ++++ ++e++ + +
  MMETSP1174-20130828|20756_1  15 EEDSVRDLNAEHKKAARKLQKELDDYAAK--QRENLKQRLKQKREALTKKLDE-------DEDASEDEKQDAVS 79 
                  45666666666655555554444333322..2333444444444444444444.......44443333333332 PP

>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.1    0.0019      0.96      21     132 ..      25      79 ..       6      86 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0019
    TIGR01541  21 aeekvlasrkdevkaleklekleeakqkalelleklaeaekseraqykrqldalGlgdkqrerleerlqierkfaeqqrdlkkaikakgeagsdeykeqlaalkaalneala 132
                    +k+  ++++e +                                                         +  a+q+++lk+ +k+k+ea  ++++e++ a +++++ a++
  MMETSP1174-20130828|20756_1  25 EHKKAARKLQKELD---------------------------------------------------------DYAAKQRENLKQRLKQKREALTKKLDEDEDASEDEKQDAVS 79 
                  33333333332222.........................................................22234445555555555555555555555555555555544 PP

>> TIGR03457  sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.5    0.0023       1.2     316     370 ..      25      78 ..      11      86 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0023
    TIGR03457 316 dakaaaaellkrleakagdakraerkakiqeersawlkeleemaherddfsldli 370
                  + k+aa +l k+l+   +  +r++ k++++++r+a  k+l+e +   +d   d +
  MMETSP1174-20130828|20756_1  25 EHKKAARKLQKELDDY-AAKQRENLKQRLKQKREALTKKLDEDEDASEDEKQDAV 78 
                  6799**********99.456799999**************998766666555554 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.1    0.0043       2.2     508     577 ..      14      81 ..       5      86 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0043
    TIGR01069 508 eekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaa 577
                  +e++ +  + ++ ++  ++l+++ +  + + k+ e lk+ l+qk++ l ++ ++ +   e e q+a+ ++
  MMETSP1174-20130828|20756_1  14 AEEDSVRDLNAEHKKAARKLQKELD--DYAAKQRENLKQRLKQKREALTKKLDEDEDASEDEKQDAVSKL 81 
                  4444444444444444444433333..3456677777777777777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       521  (0.127011); expected 82.0 (0.02)
Passed bias filter:                      290  (0.0706972); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 302.19
//
Query:       MMETSP1174-20130828|20757_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-15   53.8   0.0    2.1e-15   53.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      4e-10   37.3   0.0      7e-10   36.5   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0078   13.9   0.0       0.01   13.5   0.0    1.2  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.6e-18   2.1e-15      28     170 ..     170     302 ..     145     330 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 1.6e-18
    TIGR03903  28 eialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaL.paaetgr.LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaks 170
                  e+ + + ++h  i++  D  +     l+ + e+veG  l +++ +  +   ++etgr Lm+q + a+   h++ vvhRDLkP+ni++ +++ +   k+ DFG++  ++ ++            + G+P+Y aPe +      a s
  MMETSP1174-20130828|20757_1 170 EVRVLKGIHHEGIIECRDVFKDTT-NLYVIMELVEGGDLFDRIVSRHPKgYPEETGRqLMIQLVTAVGFLHSRNVVHRDLKPENILLKTKESDVDMKLTDFGLAKRGASCKT-----------FCGTPQYFAPEVMERQNTVAGS 302
                  777778889999999988877666.79************9998876654158888855*********************************************987766655...........89*********98554444432 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.1e-13     7e-10      45     140 ..     168     276 ..     163     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 5.1e-13
    TIGR03724  45 rkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkksk 140
                   +E+r+l+ ++++g+     ++ d+ +  ++me +eg +l d + +++          +l+ ++ ++vg lH+ ++vh Dl ++Ni++k    d ++ l DfGL+k+ +
  MMETSP1174-20130828|20757_1 168 MNEVRVLKGIHHEGIIECRDVFKDTTNLYVIMELVEGGDLFDRIVSRHPkgypeetgrQLMIQLVTAVGFLHSRNVVHRDLKPENILLKtkesDVDMKLTDFGLAKRGA 276
                  689***********99988888899999***********999888766678899999999999999**********************7555566899*******9865 PP

>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.5e-06      0.01      45      94 ..       3      55 ..       2     116 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.5e-06
    TIGR03354 45 vssrhaeiekrdga....ylltdlStnGvflnnsgsplrrgepvrLeqgdelrl 94
                 +s++h++i  + +a     +++ lS n +f+n  +++l +ge+ rL+ gd+++l
  MMETSP1174-20130828|20757_1  3 ISGKHCRIFCKQSAsgchVMIQNLSGNFTFVN-QETRLAKGESRRLNSGDAFAL 55
                 8999999976554322226899**********.6****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1248.24
//
Query:       MMETSP1174-20130828|20758_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1174-20130828|20759_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|20760_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|20764_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.2   0.0      0.013   12.0   0.0    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
      0.016   11.8   0.1      0.024   11.2   0.0    1.3  1  TIGR01455 glmM: phosphoglucosamine mutase


Domain annotation for each model (and alignments):
>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.2e-06     0.013     355     409 ..      16      70 ..       3      94 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.2e-06
    TIGR01722 355 eeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGta 409
                  ++Gn+v +++l+++  +++  +e +  p+++ + + tl++  +++ + p    t+
  MMETSP1174-20130828|20764_1  16 NNGNWVSPSVLDTLMVTAQDAHEAMVRPLVIPAITSTLNDEQRILTDVPLTSMTT 70 
                  79***********************************************976554 PP

>> TIGR01455  glmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.1e-05     0.024     181     226 ..      74     119 ..      56     123 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
    TIGR01455 181 GaaykvapkvfrelgaeviaigvepdGlnineevGsthlealqkav 226
                  G + ++  + f ++g +v++ig++++Gl i + v st ++ + + +
  MMETSP1174-20130828|20764_1  74 GISLNAMEHNFPDVGTRVVVIGDDSQGLRIGDVVESTSVNGVTEEI 119
                  5677888899****************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 541.16
//
Query:       MMETSP1174-20130828|20765_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 744.42
//
Query:       MMETSP1174-20130828|20770_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 227.31
//
Query:       MMETSP1174-20130828|20769_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1735.66
//
Query:       MMETSP1174-20130828|20774_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1013.49
//
Query:       MMETSP1174-20130828|20777_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 745.35
//
Query:       MMETSP1174-20130828|20773_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 1754.36
//
Query:       MMETSP1174-20130828|20781_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-13   45.6   0.0    6.1e-13   45.3   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.6e-05   22.3   0.0    2.6e-05   21.6   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0022   14.5   0.0     0.0027   14.2   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   4.4e-16   6.1e-13       3     136 ..      26     156 ..      24     204 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 4.4e-16
    TIGR03903   3 ghkvaikllRedaa.eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa.dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgve 136
                  g++vaik ++++ + + e       Rei l  +++h n+v+L+D    +  ll  v e+ +   l +vL   +  L++ +    +  +L +l   h++ ++hRDLkP n+ vsa++     k+ DFG++    g +
  MMETSP1174-20130828|20781_1  26 GARVAIKRIKQKPSaKFEGINFSALREIRLMREIRHKNVVELIDVFTRGS-LLHLVLELLDT-DLEDVLYKrKVELSPSDIKSYVQMMLQGLEFCHSHCILHRDLKPGNVFVSAQGIV---KLADFGLSRCHGGQQ 156
                  67899999988844222333334469******************988777.********985.688888651667*******99999***************************9975...777***998766654 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.9e-08   2.6e-05      46     138 ..      51     151 ..      46     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.9e-08
    TIGR03724  46 kEarllseakkagvntPvvydvdpe..ekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivkddk.lyliDfGLgkk 138
                  +E+rl++e++++ v    ++dv ++    ++v+e + +++l+d+l +++         ++++++ + +  +H++ i+h Dl + N+ v+++  + l DfGL++ 
  MMETSP1174-20130828|20781_1  51 REIRLMREIRHKNVV--ELIDVFTRgsLLHLVLE-LLDTDLEDVLYKRKVelspsdikSYVQMMLQGLEFCHSHCILHRDLKPGNVFVSAQGiVKLADFGLSRC 151
                  789999999999654..44454444004455555.557889999888777788888989999999999********************765516699****986 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-06    0.0027     271     302 ..     117     148 ..      52     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-06
    TIGR01982 271 qvlrdgfFHaDlHpGNilvakdgkiialDfGi 302
                      +++ H Dl pGN++v+++g + + DfG+
  MMETSP1174-20130828|20781_1 117 FCHSHCILHRDLKPGNVFVSAQGIVKLADFGL 148
                  4567999************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1222.84
//
Query:       MMETSP1174-20130828|20782_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038    9.5  11.3      0.038    9.5   7.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.046   11.2   1.2      0.053   11.0   0.6    1.2  1  TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II
      0.073   11.3   6.5      0.084   11.2   4.1    1.4  1  TIGR02420 dksA: RNA polymerase-binding protein DksA


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.8   2.8e-05     0.038     384     474 ..       3      93 ..       1     106 [] 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 2.8e-05
    TIGR02168 384 lrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeelee 474
                   +se+a +++ + +++++++  e+ ++  ++  ++l++e+++le+k+  +ea+lk+ + + +e ++ l+e++++ e +  ++++l ++ ++
  MMETSP1174-20130828|20782_1   3 MKSEIAVTRRAAYKAEKTVQDHEKGKHGQDHYIDNLNAEKRQLEQKIVLTEAQLKAQKVQTDEAKKILAETASDMELITFEKKQLMQQWKA 93 
                  4455555555556666666666666666666666666666666666666666666666666666666666665555555555555554443 PP

>> TIGR00781  ccoO: cytochrome c oxidase, cbb3-type, subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   3.9e-05     0.053     167     214 ..      47      95 ..      34     105 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.9e-05
    TIGR00781 167 eeiakaeadakakkdpnadakklvadykekakledldgde.lteldalv 214
                  ++i+  ea+ ka+k + ++akk++a+    ++l  +++++ +++ +a +
  MMETSP1174-20130828|20782_1  47 QKIVLTEAQLKAQKVQTDEAKKILAETASDMELITFEKKQlMQQWKASI 95 
                  5788899*******************************99455555555 PP

>> TIGR02420  dksA: RNA polymerase-binding protein DksA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.1   6.2e-05     0.084       5      77 ..      30     100 ..      25     104 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.2e-05
    TIGR02420   5 qleyfrkiLeewkqelleeaektleelkeeseefaDeadrAtqEeeralelrtrdRerkLlkKidealkriee 77 
                   ++++ + L+++k++l++++  t  +lk ++   +Dea +  +E+   +el t ++ ++L+++ ++++ ++ +
  MMETSP1174-20130828|20782_1  30 GQDHYIDNLNAEKRQLEQKIVLTEAQLKAQKV-QTDEAKKILAETASDMELITFEK-KQLMQQWKASIINLRK 100
                  6899************************9777.89****************99986.6799999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       381  (0.0928815); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|20787_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1174-20130828|20789_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 949.31
//
Query:       MMETSP1174-20130828|20790_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1174-20130828|20793_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 969.29
//
Query:       MMETSP1174-20130828|20792_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1333.09
//
Query:       MMETSP1174-20130828|20796_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1174-20130828|20797_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 629.49
//
Query:       MMETSP1174-20130828|20799_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|20802_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20800_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   14.6   0.0     0.0046   14.4   0.0    1.1  1  TIGR01929 menB: naphthoate synthase
  ------ inclusion threshold ------
       0.04   10.0   0.0       0.04   10.0   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ


Domain annotation for each model (and alignments):
>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-06    0.0046     151     199 ..      23      75 ..      19      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.2e-06
    TIGR01929 151 rivGqkkareif....flcrqydaeeaekmGlvnavvelaeleketvewarei 199
                   ++  k +re+     +++++y  e+a + Glv++v+++ ele +++++a ++
  MMETSP1174-20130828|20800_1  23 ELIRAKVSREVLrtgvLIGKRYGPEDAVEAGLVDKVIPAGELEAHALSMAAKL 75 
                  55666777777533327899***************************999876 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.9e-05      0.04     162     204 ..      37      79 ..       2      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.9e-05
    TIGR02440 162 miltgkqlrakqalklglvddvvpksilldvavelakkgklkr 204
                   +l gk+  + +a++ glvd+v+p   l   a  +a k +++ 
  MMETSP1174-20130828|20800_1  37 GVLIGKRYGPEDAVEAGLVDKVIPAGELEAHALSMAAKLRPED 79 
                  4899*************************9****999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 389.37
//
Query:       MMETSP1174-20130828|20801_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 505.96
//
Query:       MMETSP1174-20130828|20803_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|20804_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 970.51
//
Query:       MMETSP1174-20130828|20806_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    2.3  21.3        5.8    2.2  14.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  14.8    0.0014       5.8     739     929 ..      14     206 ..       1     240 [. 0.58

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0014
    TIGR00927 739 eedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeee.seGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedet...eieaeeeaev...kededeGeieaeedgevkGdegeeqkveaeeeeeedekdege 929
                        q++va+a+ k+e  ++    + +ae  + e + +++   + +e+ a  e +   ++ er g ++ +  +  ++ae++  + +++v+++e  ++  ++ e e  +e+ G+ k+    +++ea++++ ++++ +++   + eaee+a     k +++   +++ e+   kGd++   k+ +   + ++    ++
  MMETSP1174-20130828|20806_1  14 RTPAERQEAVAQARIKTEAVEKARLDAKDAEKVRMEAEAKKKFMMQADEKYAPTErQAAVVPNERAGGQAANP-VSVNSAETQVVRGDGDVKRDEAKKVALEKLEAEKATEKRGKAKKVT-LTKLEAEKAAAKRAEAKKAalaQLEAEETAALlalKAADETAALKSTEGKAWKGDKD---KSTKRTRTTAGLAAPRK 206
                  3444578999999999988887777776777777777666666667777776555155667889888776653.3333444444444488999999999888899999999999988776.778888777777666655411144555555431113444444445555555555555...33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       425  (0.103608); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1039.41
//
Query:       MMETSP1174-20130828|20805_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-30  102.2  18.4    6.5e-29   99.0  12.8    1.9  1  TIGR00788 fbt: folate/biopterin transporter
    8.3e-05   20.6   6.1    8.3e-05   20.6   4.2    3.0  4  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00788  fbt: folate/biopterin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0  12.8   3.2e-32   6.5e-29      91     446 ..       2     345 ..       1     360 [. 0.84

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 3.2e-32
    TIGR00788  91 GYtkrwylvlsallgs.allyglLpakessakvaalliflaalakalidvladalyveriR.rspaagpsLvslvwgasllGglissvlsGplldkkltrilvlitaallllslfvanl.vkErrafvrpridtvlevnvalltlgvlalvkkqilglkeaiklleiakavlfiflsylnlPgvlnavfvattqvLplgPefsgtvklvvnlgslagvvvvdrflkllplRlvfgltavlltlsslfdlilvkrlNlaiGisdevfvlgdsiilevlaqlkfmPvlvllarlcPsGsEssvfalLasilhlgsvvssalGvlLmelig..........itsdnsnalwllillhilapllplpllyllP 446
                  GY+++ y+++ + ++  +++  +L  + s  +   +  f+  l   + dv+ada++  +++ + +   + L+s+++++  + +++++++s +  + +++r+ ++ +a l+++ l+ a + ++E+++   +                 + +v++q  +++     + +++++ f+fl y +  +   a   +    L++    +    lv  + + +g++v+++++   + R v    + l  + s++++ l+   N+a+Gisd +f+lgds ++e ++ ++f+P+ +++  lcP GsE+  +al   + +++s + s l   L   i+             +   +l ll +   ++ ll lpl   lP
  MMETSP1174-20130828|20805_1   2 GYRRKVYMAIGWSVAVlSMASLSLTDTPS-IPFLSFGYFVFGLGFWFADVMADAVVAGKAKlEPEETRGHLQSFCYACRFFMVMVGAIFSTFAYEVTPPRLIFMFMALLPVVALLPAIWlFAEEKV---TS----------------VPSVRHQCKQIWDTCCSESVWRPMAFVFL-YNAFQLGNPAWIQFLITRLDFSSVQVNSLTLVSYVLLWVGIIVYKQYMLPWSWRNVYVFCTALGGFFSMLQICLLYGQNRALGISDFWFALGDSAMAEFVEGIQFLPLTIMMVHLCPLGSEGVAYALFTTTNNVASNLTSILSTYLLG-IWdvskeafeagKGVSGMRNLTLLTTFFQISGLLFLPL---LP 345
                  9***********99954555555554454.55555677888899999**************8888889*********************************************6655542677662...22................345899999********************.999999999999999999***99888899999999999**********9999**********************************************************************************99998888877775.56655555554433344445555555555555555554...44 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   4.2     4e-08   8.3e-05      27     138 ..       5     121 ..       2     124 .. 0.85
   2 ?    2.5   0.8     0.015        31     109     138 ..     204     232 ..     184     234 .. 0.86
   3 ?   -3.0   0.0      0.77   1.6e+03      86     106 ..     279     299 ..     262     309 .. 0.55
   4 ?   -3.1   0.2      0.82   1.7e+03     118     128 ..     370     380 ..     360     388 .. 0.52

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 4e-08
    TIGR00880  27 rkpvllvglfifvlsqllfals..snitvliiarilqGfgaaaalvagaalia...diikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                  rk  + +g ++ vls + + l+   +i  l +  ++ G+g  +a v++ a++a   ++ +ee+r++  ++ +a+ ++ +++G+++ ++ ++++  r +f+++all ++a++  + l+
  MMETSP1174-20130828|20805_1   5 RKVYMAIGWSVAVLSMASLSLTdtPSIPFLSFGYFVFGLGFWFADVMADAVVAgkaKLEPEETRGHLQSFCYACRFFMVMVGAIFSTFAYEVTPPRLIFMFMALLPVVALLPAIWLF 121
                  6667789999999999999998556778899999****999999998888875222778899*******************************************999987666555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.015
    TIGR00880 109 vlaqalgwralflilallallafilllfll 138
                  ++ ++ +wr ++++  +l +++++l+++ll
  MMETSP1174-20130828|20805_1 204 YMLPW-SWRNVYVFCTALGGFFSMLQICLL 232
                  45556.9****************9999986 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.77
    TIGR00880  86 svalgllsagialgpilGpll 106
                  +va++l+ +  +++  l  +l
  MMETSP1174-20130828|20805_1 279 GVAYALFTTTNNVASNLTSIL 299
                  555555555555544444444 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 0.82
    TIGR00880 118 alflilallal 128
                  ++fl+la++ +
  MMETSP1174-20130828|20805_1 370 VIFLALACTII 380
                  34444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.46
# Mc/sec: 1133.38
//
Query:       MMETSP1174-20130828|20808_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   19.8  23.2    3.5e-05   19.5  16.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0001   18.0  22.6    0.00013   17.6  15.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.9    5.2  21.9       0.38    7.5   5.2    2.0  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  16.1   2.5e-08   3.5e-05     324     506 ..      49     229 ..       4     240 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.5e-08
    TIGR02169 324 rlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrk....lkeeleklekelselerelaeleaqakaseee 506
                    +  +  +++l+ e+  l+r+ e+ ++e+ +l  ++++++ + + lr++++++++e +++ ++++e+        ++ +++k e+ r +e   r+e++l e   el++ + ++ el +e ++l+ ++++ e+ l q++e  +k++++++k    +k +l++ +  +++l  e+ ++ a+++  ++e
  MMETSP1174-20130828|20808_1  49 FYNDEQYTMEQLSDELSVLARQKENTEREKLELIRRIEQSEIHKDSLRRDIKQIETERDRAIKNTQEV------GDHKVEPMKIEHPRVKEDRVRMEMQLVETTVELAESKGDKLELTNENTKLKRQLQELEEVLGQTHEAIKKEKEKYSKtigeIKRKLASEQAAIEDLTLEIRRAVAEKDEFQKE 229
                  44455666778888888888888888888888888899888888899999988888877766555544......34556666666667777777889999999999999999999999999999999988888877776666655555554111156666666666777777777777777766655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  15.6   9.6e-08   0.00013     290     471 ..      50     229 ..       6     240 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 9.6e-08
    TIGR02168 290 lqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesl.eaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleee 471
                  +++ + ++++l+ e+ +l +++e+ e+e+ el +++e++e +k+ l+++ +++e+e +++ ++ +++ + ++e ++ e   +++    +e +l e   e+ae + ++ +l++e ++l+++l++lee + ++++ i++++   e+ ++ + e++++l+++++++e+l+ e +r+++++ e ++e
  MMETSP1174-20130828|20808_1  50 YNDEQYTMEQLSDELSVLARQKENTEREKLELIRRIEQSEIHKDSLRRDIKQIETERDRAIKNTQEVgDHKVEPMKIEHPRVKEDRVRMEMQLVETTVELAESKGDKLELTNENTKLKRQLQELEEVLGQTHEAIKKEK---EKYSKTIGEIKRKLASEQAAIEDLTLEIRRAVAEKDEFQKE 229
                  3344556677777777777777777777777777777777777777777777777777664444444155666667777777777777777777777777777777777777777777777777777666666665554...44457777777777777777777777777777777776665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   6.2     0.015        21     158     251 ..      32     125 ..       5     148 .. 0.79
   2 ?    7.5   5.2   0.00028      0.38      79     169 ..     131     219 ..     124     233 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.015
    TIGR01843 158 eleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaq 251
                  ++ g q  +++++ + +++++e   +++L ++  v   +  + ere  el + ++++e +  +l+++++++e +++ ++++ +e   ++++  +
  MMETSP1174-20130828|20808_1  32 KRPGFQHSVEQVQLSPNFYNDEQYTMEQLSDELSVLARQKENTEREKLELIRRIEQSEIHKDSLRRDIKQIETERDRAIKNTQEVGDHKVEPMK 125
                  556677888888888899999999999999999999999999999*****************************99999888776655555555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00028
    TIGR01843  79 veadaaelesqvlaleaevarlraeanseeaiefpdillsaedavaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqal 169
                  v+ d  ++e+q+++ + e+a  +   ++ e+++ +  l ++ ++++e++ + ++ ++++k+++++++ ++++++++++a +e+l+ +++++
  MMETSP1174-20130828|20808_1 131 VKEDRVRMEMQLVETTVELAESKG--DKLELTNENTKLKRQLQELEEVLGQTHEAIKKEKEKYSKTIGEIKRKLASEQAAIEDLTLEIRRA 219
                  455555555555555554444443..34444555545555445777777777777888888888888888888888887777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       485  (0.118235); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.77
# Mc/sec: 551.95
//
Query:       MMETSP1174-20130828|20809_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-20   69.4   0.0    1.2e-19   69.1   0.0    1.1  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   2.9e-23   1.2e-19      27     146 ..       2     111 ..       1     118 [. 0.87

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 2.9e-23
    TIGR00401  27 kvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylk 146
                  +vGy++++ enPty +vC+gd gh+e+v+ve+dp+ +++e L+ ++fe  +P   n  g+ +  qy+ +++a+s+++e+aa +   +       +k  v   +++  +y+ae  hq+++ 
  MMETSP1174-20130828|20809_1   2 SVGYTGSTAENPTYGSVCAGD-GHTEAVRVEFDPQLLGYETLIRMYFE--NPRVPNVYGAQH-PQYQCAVWAQSPAQEAAALHAAVEA------GKAGVPVLRPVGGWYDAEPNHQHFFG 111
                  79******************8.89***********************8..588888888766.69************99887655443......34458899***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|20812_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|20813_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1174-20130828|20826_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       360  (0.0877621); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20828_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|20832_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|20825_1  [L=901]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 2642.72
//
Query:       MMETSP1174-20130828|20830_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1694.86
//
Query:       MMETSP1174-20130828|20834_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   13.7   0.0     0.0076   13.7   0.0    1.2  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-06    0.0076     133     170 ..      13      50 ..       2      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-06
    TIGR01262 133 hwiekGlaalEellkekagafcvGdevtladvcLvpqv 170
                   +++ G++ lE  l+++ g f  G e+++ad++L + +
  MMETSP1174-20130828|20834_1  13 GFLRVGMELLEGRLAASGGPFILGREISIADLYLRSPL 50 
                  57889****************************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|20835_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1167.90
//
Query:       MMETSP1174-20130828|20839_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   21.0   0.0     0.0002   19.1   0.0    1.9  1  TIGR02613 mob_myst_B: mobile mystery protein B


Domain annotation for each model (and alignments):
>> TIGR02613  mob_myst_B: mobile mystery protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     5e-08    0.0002      85     171 ..      25     101 ..       1     115 [. 0.63

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5e-08
    TIGR02613  85 qipvelavllddvrywvqketyaadeiavrfhhrlvaihPfanGnGrharlladlllekllaepftwgsgslakvgdlrkeyiaalk 171
                  ++p+ +  ++d+v+    +e  a+  +a  +  r+  ihPf++GnG  ar la          +     +sl+ v   rkey++a++
  MMETSP1174-20130828|20839_1  25 EVPSLVEEFCDEVNQLHPTEMDAV-TMAAWVLWRICCIHPFSDGNGCTARALAYYT-------G--PNCSSLQLVTSSRKEYLDAFN 101
                  577777777888777655555444.45666778*****************987321.......1..123456666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|20838_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1   10.4   2.2       0.18    9.7   1.5    1.3  1  TIGR02209 ftsL_broad: cell division protein FtsL
        0.2    9.8   4.7      0.034   12.3   0.6    1.6  2  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   8.5e-05      0.18       6      55 ..      25      74 ..      23      79 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.5e-05
    TIGR02209  6 vlllllvlvsaisvvsvqhqtrqlnselqklqaeieklqkewndLqlEva 55
                 +ll+++ l + ++++ +q q+ + ++el++   +++kl ++ +++++Ev 
  MMETSP1174-20130828|20838_1 25 FLLVITTLAVLFGLFRQQGQLAEQQNELTQTRDSNQKLYEQAESAEQEVL 74
                 7999*******************************************986 PP

>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.6e-05     0.034       6      61 ..      23      78 ..      21      86 .. 0.85
   2 ?   -2.7   0.1      0.77   1.6e+03       6      25 ..     136     155 ..     132     158 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.6e-05
    TIGR03142  6 aalltlvalllvllPllrakrakatadrdelnlavYrdrLaELerdeaeglldeae 61
                 a++l+++++l+vl++l+r++ + a+++++ ++ +  +++L E ++ +++++ld ae
  MMETSP1174-20130828|20838_1 23 ALFLLVITTLAVLFGLFRQQGQLAEQQNELTQTRDSNQKLYEQAESAEQEVLDVAE 78
                 6899*****************99888888788888888888888888888888776 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.77
    TIGR03142   6 aalltlvalllvllPllrak 25 
                  +a+ +++  +l+l+++l ++
  MMETSP1174-20130828|20838_1 136 VAARLVLFKTLCLPTMLAQE 155
                  44444455556677776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 636.85
//
Query:       MMETSP1174-20130828|20841_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.2   5.6     0.0031   15.2   0.0    2.7  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.6e-07    0.0031      15      27 ..      22      34 ..      19      35 .. 0.90
   2 ?    0.4   1.5     0.035   1.4e+02       5      18 ..      38      49 ..      36      50 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.6e-07
    TIGR01376 15 sGGAIyatgkisi 27
                 +GGAIy++g+++i
  MMETSP1174-20130828|20841_1 22 RGGAIYSKGSLVI 34
                 8*********998 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.035
    TIGR01376  5 ilFsnNsakgsGGA 18
                 ++F++N a g+GGA
  MMETSP1174-20130828|20841_1 38 TTFIGN-A-GQGGA 49
                 567777.3.37887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|20843_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 150.84
//
Query:       MMETSP1174-20130828|20846_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|20845_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 773.60
//
Query:       MMETSP1174-20130828|20847_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|20848_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.52
# Mc/sec: 728.48
//
Query:       MMETSP1174-20130828|20850_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 826.37
//
Query:       MMETSP1174-20130828|20851_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.0     0.0025   15.4   0.0    1.2  1  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.1e-07    0.0025      72     130 ..      52     108 ..      30     117 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.1e-07
    TIGR00017  72 kgevevllngedvseairtqevanlvskvaaeqkvReallkkqrklakndglvadGRDi 130
                   +++++++n  dv++ i t+e +    k+aa +++R+    k +++   ++l+ad RDi
  MMETSP1174-20130828|20851_1  52 TDDTSFVYNIGDVQNCIATDECDLN-EKMAA-EAIRSFFDLKDQEVPVDEDLIADDRDI 108
                  45899****************9755.45554.68************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 731.94
//
Query:       MMETSP1174-20130828|20853_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|20854_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 533.03
//
Query:       MMETSP1174-20130828|20856_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 309.89
//
Query:       MMETSP1174-20130828|20855_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 898.54
//
Query:       MMETSP1174-20130828|20858_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|20861_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 585.70
//
Query:       MMETSP1174-20130828|20873_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.65    8.3   7.8       0.14   10.5   2.9    1.8  2  TIGR03894 chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family


Domain annotation for each model (and alignments):
>> TIGR03894  chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.11   4.5e+02      70      76 ..      42      48 ..      14      77 .. 0.61
   2 ?   10.5   2.9   3.4e-05      0.14      34      87 ..      93     146 ..      57     148 .] 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.11
    TIGR03894 70 eketkee 76
                  ++++ee
  MMETSP1174-20130828|20873_1 42 GSQDEEE 48
                 2222222 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.4e-05
    TIGR03894  34 lkalltiGdlsdqleaamvvgviaeqepddeenegeeketkeeseseseesreg 87 
                  + al+  G+      aa  v + ++ e+dd+++e++++ + ++ + ++ee+++g
  MMETSP1174-20130828|20873_1  93 MHALISRGEARRAAAAAATVVTTTKTEEDDDDTEEKKDGDAAVANDDTEEKKDG 146
                  678888888888777776666666777777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.51
# Mc/sec: 383.03
//
Query:       MMETSP1174-20130828|20871_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 996.52
//
Query:       MMETSP1174-20130828|20875_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 514.76
//
Query:       MMETSP1174-20130828|20877_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      215  (0.0524135); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 404.77
//
Query:       MMETSP1174-20130828|20878_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 257.38
//
Query:       MMETSP1174-20130828|20882_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 882.68
//
Query:       MMETSP1174-20130828|20887_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1309.19
//
Query:       MMETSP1174-20130828|20890_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.48
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|20888_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1052.35
//
Query:       MMETSP1174-20130828|20893_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|20894_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|20896_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|20899_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 341.45
//
Query:       MMETSP1174-20130828|20897_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 447.96
//
Query:       MMETSP1174-20130828|20902_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 156.43
//
Query:       MMETSP1174-20130828|20898_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.9    2.9  15.3         74   -1.0  10.6    2.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0  10.6     0.018        74     407     530 ..      19     160 ..       8     249 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.018
    TIGR00870 407 lseeklivlggvfeyildlwnildfgmnslylatil.drllailfvtqa.............llvlrekvllfdp.teieea...lf.afalvlswlnllyiargnqhlGplqimlgrmilrDllrFlfiylvvLlaFavalv 530
                  ++e  ++ ++g+  y +d+wni+d    +l++a+i+    ++ l+ ++a             ++v ++k  ++    + +e     + ++ + +  l+l  ++r+ +hl   +  lgr    Dl  F +++++ L+ + +  +
  MMETSP1174-20130828|20898_1  19 VGEVREVRSEGIWKYARDVWNIIDWFQIVLFIAQIIfYLNINHLKNIYAqpeslnvwtnfpsVYVDIQKAGMSADaILAAEDrlnIMsVIFVLVATLRLFKYLRADPHLALVSDTLGRAFQ-DLSHFGVVFCLALVMYTMMCF 160
                  67888999****************8777777776651455788888888999*******99844444444333330223332111221333345789**********************99.***********9998765433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1059.06
//
Query:       MMETSP1174-20130828|20907_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 543.80
//
Query:       MMETSP1174-20130828|20906_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 702.37
//
Query:       MMETSP1174-20130828|20909_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-26   89.2   0.4    2.3e-24   83.9   0.0    2.0  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.1e-19   68.3   0.6    4.6e-19   66.2   0.2    2.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.3e-10   38.2   0.3    1.5e-10   38.0   0.2    1.2  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    9.6e-06   22.9   0.5    0.00099   16.2   0.0    2.2  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    0.00034   17.6   0.0    0.00069   16.6   0.0    1.5  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
     0.0025   14.1   0.1     0.0056   12.9   0.0    1.6  2  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0051       3.5     109     151 ..       1      46 [.       1      59 [. 0.79
   2 !   83.9   0.0   3.3e-27   2.3e-24     146     259 ..      75     189 ..      53     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0051
    TIGR00475 109 vltKaDrvdee....evkevEeelkeileeeeflknakivkvsAktG 151
                  v++K+D v e      +++  ++++e+l +++f+ +a iv ++A  G
  MMETSP1174-20130828|20909_1   1 VMNKIDLVPEVdrdiAIERSKRKIREVLSNTKFA-DAPIVCTAAAVG 46 
                  6889998755311125788899************.******998766 PP

  == domain 2    score: 83.9 bits;  conditional E-value: 3.3e-27
    TIGR00475 146 vsAktGq.GieeLkkelknLlesldakdkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilk 259
                  v+Ak+G  G++ L + ++n +   + +   +p+ + iD+ F++KG GtvvtGt++sG+v+++D + +  + ++ +vk++q ++ +v+ a  G+R+++ l+++d++ ++RG+ +  
  MMETSP1174-20130828|20909_1  75 VAAKNGPiGLDTLLEVIHNTVAIPERRCDAEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRPVKVACQGDRVGICLQGLDAKLVERGIAATP 189
                  7899985599999999999999888888899*******************************************************************************55443 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.2   6.7e-22   4.6e-19     135     298 ..       2     191 ..       1     204 [. 0.77

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 6.7e-22
    TIGR00485 135 lnkvdlv...ddeellelvelevrellseydfpgddvpivrgsalkale...........................gdaeweekilelmeavdeyiptperevd.kpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgs 298
                  +nk+dlv   d +  +e  + ++re+ls+ +f   d piv  +a    e                           + ++    +  l+e + + +  per  d +pf ++i+  fsi+g+gtvvtg v  g+v++++ vei  l+  kk  v  ++mf++ ++ a  gd vg+ l+g++ + +erg   a pg 
  MMETSP1174-20130828|20909_1   2 MNKIDLVpevDRDIAIERSKRKIREVLSNTKFA--DAPIVCTAAAVGGEkvaamgsaekkkrtgvkpseakeaepvAAKNGPIGLDTLLEVIHNTVAIPERRCDaEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKK--VKSMQMFRRPVKVACQGDRVGICLQGLDAKLVERGI-AATPGL 191
                  577776521133345667777788888887775..467766655544444555567777777777776665544333333334467899*************99569**************************************99887..7899*******************************6.466765 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.2   2.2e-13   1.5e-10     208     308 ..      85     187 ..      10     207 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 2.2e-13
    TIGR00483 208 ktlleald.kleapekpvd.kplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdva 308
                  +tlle +  ++  pe+  d  p+ + i+  +si g gtv  g v +g ++  + v +    v  +vks++m    ++ a  gd +g+ ++g+  k + rg  a
  MMETSP1174-20130828|20909_1  85 DTLLEVIHnTVAIPERRCDaEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRPVKVACQGDRVGICLQGLDAKLVERGIAA 187
                  6999999625788**999846******************************************************************************9554 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0042       2.9     141     179 ..       1      43 [.       1      53 [. 0.81
   2 !   16.2   0.0   1.4e-06   0.00099     174     260 ..      72     151 ..      48     170 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0042
    TIGR03680 141 vqnkidlv...skekalen.yeeikefvkgtvaenapiiPvsa 179
                  v nkidlv   +++ a+e+  ++i+e++ +t   +api+  +a
  MMETSP1174-20130828|20909_1   1 VMNKIDLVpevDRDIAIERsKRKIREVLSNTKFADAPIVCTAA 43 
                  68*****6433788888861568***************98877 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.4e-06
    TIGR03680 174 iiPvsalkk.vnidvllealekeiptperdldkda.lllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegk 260
                    Pv+a++  + +d lle +++++  per  d+++  +++   f +          +G v+ G+++ Gk++++d +ei P ++vek+ k
  MMETSP1174-20130828|20909_1  72 AEPVAAKNGpIGLDTLLEVIHNTVAIPERRCDAEPfYFSIDHCFSIKG--------QGTVVTGTVLSGKVRINDLVEI-PRLRVEKKVK 151
                  458999875499******************998762578999999875........56699****************9.8899988655 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   3.9e+02     140     186 ..       2      51 ..       1      65 [. 0.55
   2 !   16.6   0.0     1e-06   0.00069     199     308 ..      86     197 ..      66     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.57
    TIGR02034 140 vnkidlv.dydeevfeeikkdylalaeklgvsdvtviPl....salkGdnvv 186
                  +nkidlv + d+++  +i+++ +++ e l+++++   P+    +a+ G+ v+
  MMETSP1174-20130828|20909_1   2 MNKIDLVpEVDRDI--AIERSKRKIREVLSNTKFADAPIvctaAAVGGEKVA 51 
                  69999984455554..455555555555554444444441112345566665 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1e-06
    TIGR02034 199 tllevl.etvevee.saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvle..deidisrGdllaaadeapevadq 308
                  tllev+ +tv++ e + ++e++ + +++    + +    +Gt++sG+v+  d v +    +e +v+++  f + ++ a  G+ v + l+  d+  ++rG  +aa+    +v+d+
  MMETSP1174-20130828|20909_1  86 TLLEVIhNTVAIPErRCDAEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRPVKVACQGDRVGICLQglDAKLVERG--IAATPGLVPVVDA 197
                  67887635889876368999*********999999999*****************9999*************************999972223334555..4444444455544 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.32   2.2e+02     128     153 ..       1      31 [.       1      60 [. 0.63
   2 !   12.9   0.0   8.2e-06    0.0056     153     242 ..      68     159 ..      48     182 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.32
    TIGR01393 128 vinkidl.Psad....vervkkeieeviGld 153
                  v+nkidl P  d    +er k++i+ev+   
  MMETSP1174-20130828|20909_1   1 VMNKIDLvPEVDrdiaIERSKRKIREVLSNT 31 
                  6899997565542222677888888887643 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.2e-06
    TIGR01393 153 daeeailvsaktG.igieelleaivkkvpaPkgdkeaplkalifdsvyd.ayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpk 242
                  +a+ea  v+ak+G ig++ lle i + v+ P+   +a+   + +d  +  + +G vv   v++Gk++ +d +++     e +v+ + +++  
  MMETSP1174-20130828|20909_1  68 EAKEAEPVAAKNGpIGLDTLLEVIHNTVAIPERRCDAEPFYFSIDHCFSiKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRP 159
                  67788889****978*********************99888989988873579******************999888888888888777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1160.73
//
Query:       MMETSP1174-20130828|20911_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1174-20130828|20910_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 970.30
//
Query:       MMETSP1174-20130828|20912_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.78
# Mc/sec: 208.14
//
Query:       MMETSP1174-20130828|20917_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.52
# Mc/sec: 147.22
//
Query:       MMETSP1174-20130828|20919_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00065   16.6   2.6     0.0014   15.5   0.0    2.1  2  TIGR00020 prfB: peptide chain release factor 2


Domain annotation for each model (and alignments):
>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.4e-07    0.0014      85     164 ..     128     205 ..     106     220 .. 0.82
   2 ?    0.2   0.7     0.015        61      44      79 ..     333     369 ..     309     401 .. 0.47

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.4e-07
    TIGR00020  85 lakeekdeellaeleeelkalekelkelelktllsgeydaknalltiqaGaGGteaqdWasmLlrmylrwaerrgykvei 164
                  l++ +++e+ l+e +++l++l++   e++   l+  e  + n   t  +G+GG +a dWa +L  m +    ++  k+ i
  MMETSP1174-20130828|20919_1 128 LVRPKDNETKLSEFQSNLQKLQSARGEVQKMALFMSEQQQMNP--TATTGSGGSKAPDWAPVLDYMNKTLNGQKVIKARI 205
                  4555677788999**************9999999999988887..5669****************999888888777654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.015
    TIGR00020  44 nlWndq.ekaqkvikeksslkekldkleelkksledl 79 
                  ++ +++ ++ ++v +  ++l++  + +eel +  ++ 
  MMETSP1174-20130828|20919_1 333 EIAQENsKRIETVHSSVTELNKIFRDVEELVNDQQEG 369
                  4433321333334444444444444444433333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1272.75
//
Query:       MMETSP1174-20130828|20922_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.6   0.0       0.06    9.6   0.0    1.7  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   1.5e-05      0.06     290     322 ..     363     395 ..     346     398 .. 0.86
   2 ?   -0.9   0.0     0.022        91     327     371 ..     419     461 ..     417     471 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.5e-05
    TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGd 322
                   ++ d+  +l+ig LPl ++  q++e L s Gd
  MMETSP1174-20130828|20922_1 363 AGGQDEGRRLFIGRLPLTVTATQLREALSSPGD 395
                  6789************************99987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.022
    TIGR01642 327 nliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  + iKd+  Gl  G aF+     s  + A  +  G+kl +kkL+v 
  MMETSP1174-20130828|20922_1 419 QWIKDRSSGLFYGSAFVGMG--SAEEAARVSAKGLKLNGKKLKVN 461
                  67999999*99999999875..56677777888999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1564.55
//
Query:       MMETSP1174-20130828|20925_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1060.80
//
Query:       MMETSP1174-20130828|20929_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.62
# Mc/sec: 140.50
//
Query:       MMETSP1174-20130828|20930_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   11.0  11.5      0.061   11.1   8.0    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.24    9.6  16.0       0.27    9.4  11.1    1.3  1  TIGR00621 ssb: single-stranded DNA-binding protein
       0.37    7.0   6.0       0.45    6.7   4.1    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
        0.6    6.3  20.0       0.61    6.2  13.9    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.3    5.5   8.3        1.5    5.3   5.8    1.0  1  TIGR01817 nifA: Nif-specific regulatory protein
        3.5    4.0   7.1        3.1    4.2   4.9    1.0  1  TIGR00860 LIC: cation transporter family protein
        3.8    4.5  15.5        3.7    4.5  10.8    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        5.2    2.3  19.1        5.6    2.2  13.3    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        7.6    3.3  15.7        7.5    3.4  10.9    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.0   0.00013     0.061      65     108 ..       5      48 ..       1      92 [. 0.46

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00013
    TIGR03499  65 eakkaleeaepkklskaeekeekekeaeekaaeaaqeaekklee 108
                  + ++ ++++++++++++++++++++e+e+++ e++++++++  +
  MMETSP1174-20130828|20930_1   5 QQQQPQQQQQQQPQQQQQQQQQQQQEQEREQXEKQRQQQQQHGT 48 
                  22222222222222222222222222222222222222222222 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  11.1   0.00059      0.27     117     156 ..       5      54 ..       1      94 [. 0.48

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00059
    TIGR00621 117 gekelneesges...qqqapqesqqeaqatgkekassapqkq.......l 156
                  ++++ +++++++   qqq+ q++qqe+++++ ek+ +++q++       +
  MMETSP1174-20130828|20930_1   5 QQQQPQQQQQQQpqqQQQQQQQQQQEQEREQXEKQRQQQQQHgtkkvgdE 54 
                  22222222222221122222223333333333333333333354433330 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.1   0.00099      0.45     235     300 ..      21      87 ..       2      96 .. 0.43

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00099
    TIGR04074 235 alerLaeeeeaeeeeee.eeeeeeeekekkvslaeqRleavvaalresgarsvlDlGcGegkLlkaL 300
                    ++ ++++e+e e+ e ++++++++ +kkv  +++  +av aa r ++    + +G G gk+ + L
  MMETSP1174-20130828|20930_1  21 QQQQQQQQQEQEREQXEkQRQQQQQHGTKKVGDEDTGEAAVAAAPRMTHKSGGVGVGGGGGKMHRSL 87 
                  1111111112222222213333444444444445555555555555555555566666666665555 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  13.9    0.0013      0.61     332     401 ..       6      72 ..       1      96 [. 0.42

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0013
    TIGR02442 332 eakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavsk 401
                  +  ++++++++++ ++++ +++q++++++++++ e++ ++++++ +++  + ++ +a+ +++++++  s 
  MMETSP1174-20130828|20930_1   6 Q--QQPQQQQQQQPQQQQ-QQQQQQQQEQEREQXEKQRQQQQQHGTKKVGDEDTGEAAVAAAPRMTHKSG 72 
                  1..111111111111111.111112333444444444444444444444555555555555555555554 PP

>> TIGR01817  nifA: Nif-specific regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.8    0.0032       1.5     163     226 ..      13      78 ..       2      84 .. 0.49

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0032
    TIGR01817 163 aaererllaekeqeekelrdk..eaeaaeerelkedvivGespalkqvvdkikvvarsnstvLlrG 226
                  ++++ +++++++q++++ +++   ++++++++++ +  vG+  + ++ v+ + ++++    v + G
  MMETSP1174-20130828|20930_1  13 QQQQPQQQQQQQQQQQQEQEReqXEKQRQQQQQHGTKKVGDEDTGEAAVAAAPRMTHKSGGVGVGG 78 
                  222222222222222222222113333333344444568888888888888888877776666655 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.9    0.0067       3.1     337     371 ..      11      49 ..       1      92 [. 0.44

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0067
    TIGR00860 337 kkk....rklllerlarllkkkeegeekrrpaleakels 371
                  +++    +++ ++++++++++++e+ ek+r++ +++ ++
  MMETSP1174-20130828|20930_1  11 QQQqqqpQQQQQQQQQQQQEQEREQXEKQRQQQQQHGTK 49 
                  111111122222222222222222222222222222222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.8    0.0082       3.7     113     166 ..       7      60 ..       1      95 [. 0.37

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0082
    TIGR03752 113 elkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaq 166
                  +  ++++q++ +q++ +++ ++++++ e+  ++++++++  +  +G e++++a+
  MMETSP1174-20130828|20930_1   7 QQPQQQQQQQPQQQQQQQQQQQQEQEREQXEKQRQQQQQHGTKKVGDEDTGEAA 60 
                  111111111111111111112222222222222222222223333333333332 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  13.3     0.012       5.6     904     985 ..      15      96 ..       2      98 .] 0.62

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.012
    TIGR00927 904 vkGdegeeqkveaeeeeeedekdegeedeeeia.ddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeee 985
                  ++ +++ +q+ +++++e+e e+ e++ ++++++ +++ ++++tge+ ++a  +   k +  Gv g+gg      +++e+e++ 
  MMETSP1174-20130828|20930_1  15 QQPQQQ-QQQQQQQQQEQEREQXEKQRQQQQQHgTKKVGDEDTGEAAVAAAPRMTHKSGGVGVGGGGGKMHRSLDDDEDEDHR 96 
                  222333.3333333444444444444444444403445677899*******************99998888877888888765 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  10.9     0.016       7.5     481     514 ..       5      46 ..       1      85 [. 0.34

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.016
    TIGR01628 481 askanqanvkaqpqaqskn.qmqqvvqdnn.......lpqkq 514
                   ++++q++ ++qpq+q+++ q qq  q+ +        +q++
  MMETSP1174-20130828|20930_1   5 QQQQPQQQQQQQPQQQQQQqQQQQQEQEREqxekqrqQQQQH 46 
                  222222222222221111101111111111111111011111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       700  (0.170648); expected 82.0 (0.02)
Passed bias filter:                      406  (0.0989761); expected 82.0 (0.02)
Passed Vit filter:                       105  (0.0255973); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.90
# Mc/sec: 143.72
//
Query:       MMETSP1174-20130828|20926_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1262.81
//
Query:       MMETSP1174-20130828|20932_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|20933_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|20936_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|20938_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 796.19
//
Query:       MMETSP1174-20130828|20942_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 570.76
//
Query:       MMETSP1174-20130828|20935_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1991.48
//
Query:       MMETSP1174-20130828|20941_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1185.26
//
Query:       MMETSP1174-20130828|20946_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 830.75
//
Query:       MMETSP1174-20130828|20949_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 275.29
//
Query:       MMETSP1174-20130828|20955_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|20954_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-31  106.7  26.5    2.6e-23   80.1  12.4    2.7  2  TIGR00906 2A0303: cationic amino acid transport permease
    8.8e-21   72.1  22.7    4.3e-17   60.0  10.7    2.1  2  TIGR00909 2A0306: amino acid transporter
     0.0003   17.5  15.5    0.00051   16.8  10.8    1.4  1  TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family


Domain annotation for each model (and alignments):
>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1  12.4   1.9e-26   2.6e-23     172     428 ..       3     238 ..       1     251 [. 0.90
   2 !   30.5   0.5     2e-11   2.7e-08     544     595 ..     318     369 ..     279     374 .. 0.90

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 1.9e-26
    TIGR00906 172 lilllavll.alGvkesarvnkiftiinllvllfvivaGfvkadvknwkiteeflknlsasedgtsiyGaggflPyGvrGvlsgaatcfyafvGfdaiattgeevknPqkaiPigivtsllvifvayvlvsaaltlmlPyqlldeda..plavafeyvgwevakyivavGalaalstsllgsafalprvvyamaedgllfkflakinsktktPinatvvsgaiaallaflfdlkalvdllsigtllayslvavcvlvlry 428
                  +i l++v++  lG      v ++ft+ +  +++f+i++Gf  a v+ +   e                    ++ +G++G+++g + +f+ f+Gfd ++  +    n   ++P +i ++l+  +++ +l   al++m+    +d+d+  ++   f+ vgw v ++ivavG    l  ++l+  +++p ++ ama+dg++++++a  nsk +  ++  v+sg +  l+++ + + +l +++s+g l+ + l   ++++lr 
  MMETSP1174-20130828|20954_1   3 VIQLVCVVIcYLGLDLGKSVINVFTVAKCCLVIFMIICGFCAARVNIFASPE-------------------VYFDHGLSGTFEGVSLLFFGFIGFDEVCCLAAKSENSAVTMPRAIAGTLIGAALMSMLAQLALAVMV----IDNDSvtSFEDQFKDVGWPVVQWIVAVGEEILLPLVVLVCFIPQPELLAAMADDGIIPQVFAGRNSK-GVFVMGCVISGTAMTLVSLCVPFAILWNMISLGVLIGFNLTNSSLIMLRL 238
                  566777665169999999999***************************9333...................4788*********************************************999988888888888885....666652278999*****************************************************87.567889999999999*********************************96 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 2e-11
    TIGR00906 544 nkakvafkvPlvPflPalsilvniyllvqldaktwvrfaiWlaiglviyvay 595
                  +   ++f+ P vP+lP+l++lvn+ l+ ++ a+ ++ fa ++ + + +y++y
  MMETSP1174-20130828|20954_1 318 DDDGKIFRAPWVPVLPCLAMLVNLVLMASFTANDHIYFAAFTVVIFGFYFCY 369
                  456689*********************************************9 PP

>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0  10.7   3.1e-20   4.3e-17     139     380 ..       3     243 ..       1     298 [. 0.78
   2 !   14.6   2.5   1.8e-06    0.0025     379     429 .]     319     369 ..     259     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 3.1e-20
    TIGR00909 139 livllltiilllGvkeskkvnsilvvlkvlavllFvalgaiklkst...nytpfmPlGlggvlaaaalvFlafiGFeivstaaeevkdperdipkaiilslivvtllYvlva.avvlGvvPfrvlagseaelslvkvsaiqklgalilaagavvsiasvllatlygtsRvlfAlsrdGllpkslskvhektktPyvailifsllaallaslvpleelaeltslglliafvlvavaviilRrkrPdl 380
                  +i l+  +i +lG    k v ++++v k   v+  ++ g    + +   + + ++  Gl+g + + +l+F+ fiGF+ v   a    +++ ++p+ai  +li + l+ +l + a+++ v+      +s ++      + + +++ +i+a+g  + +  v+l+ +  +  +l A++ dG++p++++  + k +   +  +i ++ ++l+++ vp  +l ++ slg+li f l++ ++i+lR+ +  +
  MMETSP1174-20130828|20954_1   3 VIQLVCVVICYLGLDLGKSVINVFTVAKCCLVIFMIICGFCAARVNifaSPEVYFDHGLSGTFEGVSLLFFGFIGFDEVCCLAAKSENSAVTMPRAIAGTLIGAALMSMLAQlALAVMVIDN----DSVTSFEDQFKDVGWPVVQWIVAVGEEILLPLVVLVCFIPQPELLAAMADDGIIPQVFAGRNSK-GVFVMGCVISGTAMTLVSLCVPFAILWNMISLGVLIGFNLTNSSLIMLRLGNGGA 243
                  5667778999******************988887777777777777445667899**********************************************999998877651233333344....44444444555567789******************************************98877.56678889999999999999*****************************977543 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.8e-06
    TIGR00909 379 dlqrafkvPlvpvlpalalllclylllelgegtivvklvwlllgsvlyliy 429
                  d  + f+ P vpvlp la+l+ l l+ + +  + +++ ++ ++   +y+ y
  MMETSP1174-20130828|20954_1 319 DDGKIFRAPWVPVLPCLAMLVNLVLMASFTANDHIYFAAFTVVIFGFYFCY 369
                  44578********************************************98 PP

>> TIGR00905  2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  10.8   3.7e-07   0.00051     137     385 ..       5     240 ..       1     309 [. 0.74

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.7e-07
    TIGR00905 137 lWvvtflvlrGvrqaaaintittvakliPlvlfiilglflFkldlftadfwgkdstslgsvveqvkstmlvtlWvFiGiEgAvvlsarakn.ksdvgkAtvlgllsvlviyilitl.lslGvltqqeLaelknpsmaavleavvgkwgavlislgliisvlgallsWtllvaevlllaakdgllPkifgkvnkkkapskallltaivvqlllllvlltskaynvllslatvlilvpYllsaayllklakae 385
                    v+ ++   G     ++  + tvak   ++++ii g+ +  +++f+      d   l++++e v     +    FiG +  + l+a+ +n   + ++A+   l++++++ +l+ l l++ v++++ +++ ++      ++ v  ++ + ++++g  i +    l   +   e+l+++a+dg++P++f+  n+k++ +++ +++ + ++l+ l v      +  l ++ +  +l+ + l    l++l   +
  MMETSP1174-20130828|20954_1   5 QLVCVVICYLGLDLGKSVINVFTVAKCCLVIFMIICGFCAARVNIFASPEVYFDH-GLSGTFEGVS----LLFFGFIGFDEVCCLAAKSENsAVTMPRAIAGTLIGAALMSMLAQLaLAVMVIDNDSVTSFEDQ-----FKDVGWPVVQWIVAVGEEILLPLVVLVCFIPQPELLAAMADDGIIPQVFAGRNSKGVFVMGCVISGTAMTLVSLCV-----PFAILWNMISLGVLIGFNLTNSSLIMLRLGN 240
                  5567777788888776666677889998888888888899******998777767.6899999874....67789****************899*************999988875255666777788877777.....455555566666666655544444445557788999*******************************999999887.....4566777777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1064.34
//
Query:       MMETSP1174-20130828|20960_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|20964_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|20963_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-60  201.6   0.0    3.7e-60  201.2   0.0    1.2  1  TIGR00628 ung: uracil-DNA glycosylase


Domain annotation for each model (and alignments):
>> TIGR00628  ung: uracil-DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.0     9e-64   3.7e-60       2     160 ..      68     227 .]      67     227 .] 0.97

  Alignments for each domain:
  == domain 1    score: 201.2 bits;  conditional E-value: 9e-64
    TIGR00628   2 esWkellkeelkkpylkellkelkeerk.eeevyPkkedvfawtrltkpedvkvvilGQDPYhgpgqahGLaFsvkkevkippsLknifkelkkelpevespkhglLekWaeqGvLLLNtvLtvekgqaasHkklgWekftkavisllse.kkeklvfllw 160
                  +sW+++++ e++kpy+++l ++l+ e +  ++++P+++++f+++ l++++dv+vv++GQDPYh+pgqahGL+Fsv+k+vk+ppsL+n++ke  ++ + +++p+hg L++Wa+qGvL+LN+vLtv++++a+sHk +gW +ft+avi++l++ +++k++fllw
  MMETSP1174-20130828|20963_1  68 KSWATVMNAEFRKPYFTRLHSFLSGEVSkGKRIFPPADKIFTAFDLCDFDDVRVVVVGQDPYHQPGQAHGLSFSVEKGVKTPPSLRNMVKEAMACEG-ISKPSHGNLTNWARQGVLMLNSVLTVQHNEANSHKGKGWVQFTDAVIHQLNKrTDRKIIFLLW 227
                  79*********************99887699*************************************************************99988.**************************************************9967778*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.57
# Mc/sec: 516.58
//
Query:       MMETSP1174-20130828|20967_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1174-20130828|20969_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|20972_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.5   0.2      0.042   10.4   0.1    1.0  1  TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular


Domain annotation for each model (and alignments):
>> TIGR01849  PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     1e-05     0.042     263     303 ..      16      56 ..       7      59 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
    TIGR01849 263 ldrhvkahkelfaslvkgdgdeadkhrefydeylavldlta 303
                    +hv++ + + +++   d+++ +   +fyd     +dl+ 
  MMETSP1174-20130828|20972_1  16 NAKHVDSKRAYLTDVQFVDTSSVQIAVTFYDLMQKRMDLPS 56 
                  579************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|20973_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 830.43
//
Query:       MMETSP1174-20130828|20978_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 201.65
//
Query:       MMETSP1174-20130828|20980_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   10.6   0.1      0.082   10.6   0.0    1.6  2  TIGR02869 spore_SleB: spore cortex-lytic enzyme


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     2e-05     0.082     154     187 ..      98     131 ..      90     140 .. 0.85
   2 ?   -2.8   0.3      0.26   1.1e+03     165     184 ..     156     175 ..     154     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2e-05
    TIGR02869 154 akkavldainGwdPsggalyyfnpakatssWiws 187
                  +  a  d ++ wd    + yy+n +    sWi  
  MMETSP1174-20130828|20980_1  98 EEAASCDWVELWDEEVQSYYYYNENSGEASWIKP 131
                  456889*************************975 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.26
    TIGR02869 165 wdPsggalyyfnpakatssW 184
                  wd  +g  y f +++   +W
  MMETSP1174-20130828|20980_1 156 WDDDEGMWYSFCAETGETQW 175
                  99999999*9***9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 519.35
//
Query:       MMETSP1174-20130828|20981_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 442.34
//
Query:       MMETSP1174-20130828|20982_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 697.66
//
Query:       MMETSP1174-20130828|20983_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.45
# Mc/sec: 472.23
//
Query:       MMETSP1174-20130828|20985_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|20984_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   36.6   0.0    3.4e-10   36.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0031   13.9   2.7     0.0042   13.4   1.9    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.006   12.1   0.8     0.0077   11.7   0.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.39    8.9   6.5       0.25    9.5   3.1    1.6  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   3.3e-13   3.4e-10      99     181 ..      27      99 ..      23     168 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 3.3e-13
    TIGR03903  99 GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                   ++hRD+kP ni +   d +++ak+ DFG++  l+ +          ++  +G+P Y +Pe + +e+  a+sD++a G  + e
  MMETSP1174-20130828|20984_1  27 CILHRDVKPTNIFL---DINRNAKLGDFGMAKQLSSASR-------MAQSNVGTPVYMSPELINDEAYDAASDIWALGCCIYE 99 
                  699*********98...889***********99999888.......455679*************************988777 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.9   4.1e-06    0.0042      68     130 ..     185     247 ..     159     255 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.1e-06
    TIGR03319  68 ekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleel 130
                  + elk+ +++l+kl+  ++ k  +l+r++e+l+k+e+e++k e+ l+++e  + ++e+ l+++
  MMETSP1174-20130828|20984_1 185 QGELKRFEANLKKLQCDIETKAAELSRRDEELKKREDEMRKMEQWLASREVAVLARERALKKK 247
                  345666666777777777777777777777777777777777777777777777766666654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.6   7.5e-06    0.0077     442     499 ..     179     236 ..     132     260 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.5e-06
    TIGR02169 442 eeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaq 499
                  ++l+  + e+k+ e +l++l+ d e+  +el+++ eel+k e+e++++e+ la  e  
  MMETSP1174-20130828|20984_1 179 TKLKVSQGELKRFEANLKKLQCDIETKAAELSRRDEELKKREDEMRKMEQWLASREVA 236
                  2334445566666666666666666666666666666666666666666655554433 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1   0.00025      0.25       5      85 ..     165     245 ..     161     247 .. 0.91
   2 ?   -3.0   0.0       1.8   1.9e+03     112     129 ..     273     290 ..     272     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00025
    TIGR03495   5 vllvllllalglqsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrie 85 
                  ++l++  + l + + +l+ ++ +l++ e+ lk+ q ++e ka+ l++  +e+k++e + ++++q la+ e +   re+ ++
  MMETSP1174-20130828|20984_1 165 AILGARTIVLDVDKTKLKVSQGELKRFEANLKKLQCDIETKAAELSRRDEELKKREDEMRKMEQWLASREVAVLARERALK 245
                  6788888999999999999***********************************************999999999998876 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.8
    TIGR03495 112 rPAltgaadyrqwlsesd 129
                  rP  + aa+y +++ e +
  MMETSP1174-20130828|20984_1 273 RPSTAPAAGYLRKVVENE 290
                  9999******99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.81
# Mc/sec: 617.58
//
Query:       MMETSP1174-20130828|20991_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|20988_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 2404.78
//
Query:       MMETSP1174-20130828|20992_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|20993_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 208.25
//
Query:       MMETSP1174-20130828|20994_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|20997_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 371.97
//
Query:       MMETSP1174-20130828|20998_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1083.09
//
Query:       MMETSP1174-20130828|21001_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|21007_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|21006_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 2309.81
//
Query:       MMETSP1174-20130828|21012_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|21014_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|21013_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1497.25
//
Query:       MMETSP1174-20130828|21017_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|21016_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.2   0.0      0.021   11.6   0.0    1.3  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase


Domain annotation for each model (and alignments):
>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.1e-06     0.021     216     257 ..      30      77 ..      26      94 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.1e-06
    TIGR01251 216 vDDiisTggTlvka.aelLkekGAkkviv.....aathgvfsgdAler 257
                  vDD+isT g l+ka ++l  + G ++viv     + t ++f++d ++r
  MMETSP1174-20130828|21016_1  30 VDDVISTHGALCKAwVNLTPSLGMHDVIVngkhlCGTAALFQDDTINR 77 
                  9*************44666799******93333344557888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 801.36
//
Query:       MMETSP1174-20130828|21018_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|21019_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1996.76
//
Query:       MMETSP1174-20130828|21027_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|21028_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 581.47
//
Query:       MMETSP1174-20130828|21031_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|21029_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|21034_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   61.0   0.0    1.5e-17   61.0   0.0    1.0  1  TIGR01311 glycerol_kin: glycerol kinase
    1.8e-07   27.9   0.0    1.8e-07   27.9   0.0    1.0  1  TIGR01312 XylB: xylulokinase
    0.00021   17.9   0.0    0.00022   17.9   0.0    1.0  1  TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase


Domain annotation for each model (and alignments):
>> TIGR01311  glycerol_kin: glycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.1e-20   1.5e-17      10      65 ..       1      56 [.       1      58 [] 0.97

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1.1e-20
    TIGR01311 10 ttssraivfdkegeevakaqkelsqifpkegwvEhdpleilesvvkvlaealekle 65
                 t+s+r++++d++g +v++aq+e++q++pk+gwvEhdplei++++ +v++ alek++
  MMETSP1174-20130828|21034_1  1 TSSTRFVLLDHDGVIVSQAQIEHKQMYPKPGWVEHDPLEIWRNTERVIEMALEKAK 56
                 89***************************************************987 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-10   1.8e-07       7      62 ..       1      56 [.       1      58 [] 0.97

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.3e-10
    TIGR01312  7 TssvKallvdekgeviasgsasltvispkpgwsEqdpeewlealeealkellekak 62
                 Tss++ +l+d+ g ++ +++ +++ + pkpgw E dp e ++ +e++++ +lekak
  MMETSP1174-20130828|21034_1  1 TSSTRFVLLDHDGVIVSQAQIEHKQMYPKPGWVEHDPLEIWRNTERVIEMALEKAK 56
                 99************************************************999987 PP

>> TIGR01315  5C_CHO_kinase: FGGY-family pentulose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.6e-07   0.00022       9      65 ..       1      57 [.       1      58 [] 0.96

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.6e-07
    TIGR01315  9 tGsaraaivdldGdvlelaaqkiktwrpssgleeqssdeiWqaicsvvkkvlaeakv 65
                 t s+r  ++d dG + ++a  + k + p++g +e++  eiW+   +v+  +l +akv
  MMETSP1174-20130828|21034_1  1 TSSTRFVLLDHDGVIVSQAQIEHKQMYPKPGWVEHDPLEIWRNTERVIEMALEKAKV 57
                 6799************************************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|21032_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-73  244.8  14.7    5.1e-73  244.4  10.2    1.0  1  TIGR00898 2A0119: cation transport protein
    3.2e-26   90.0  17.8    3.2e-26   90.0  12.3    1.6  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.2e-24   83.7  22.6    2.5e-24   83.5  15.7    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    2.5e-14   49.9  27.4    1.4e-07   27.6  10.1    2.9  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    1.4e-11   42.5  41.6    1.5e-08   32.7  10.9    3.6  4  TIGR00880 2_A_01_02: multidrug resistance protein
    6.5e-10   36.4   2.9    6.5e-10   36.4   2.0    2.9  3  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    2.7e-07   27.7   6.6    2.7e-07   27.7   4.6    2.3  2  TIGR00887 2A0109: phosphate:H+ symporter
    2.8e-05   21.5   9.2    2.8e-05   21.5   6.4    2.5  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
  ------ inclusion threshold ------
      0.025   11.4  18.5      0.059   10.2   1.9    2.0  2  TIGR00881 2A0104: phosphoglycerate transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.4  10.2   1.1e-75   5.1e-73      95     500 ..      33     456 ..      21     460 .. 0.89

  Alignments for each domain:
  == domain 1    score: 244.4 bits;  conditional E-value: 1.1e-75
    TIGR00898  95 aledalegweyskdtlsstivtEwdlvc.....edawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.....WRwLlllvslPlvlflvlv.wfvpESpRwlisqgrieeAlkiLkrvAkingk.....klpaevlslslekelsekkakk.aslldllrtpk.....lrkttlllmllwfttafsYygLvldleelggniYldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk..llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagllsllLPetkg 500
                  a++d +e + ++   + s+i   ++++c     ed wk+k+++++  +G+++G+l+ + +sD +GRk v+++   ++a   +  a+sp+ + ++v+r+L G+g  gi +++++L +Ef+  +  a +g +i v++++ +++++ +AY+i       WR+L ++++lP+++   +  ++vpESp +li+qg+ieeA+k+++   +++g       ++ e+++ ++ ++ + +k+   ++l  l+ ++        ++tll+ ++wf++af+Y++L+l ++ l gn+Y+++++  +ve p+++ t+ l dr+gRr  ++  l l+gv+++l+ ++++       +++ a+ gk+ +s++F ++y+y +EL+PT +R +g g cs++ar   +i+Pf  ++ g  +    +   g++a   ++l ++LPetk 
  MMETSP1174-20130828|21032_1  33 AAQDRTEDCTWE--GVPSSIDRSFGISCvegceEDCWKNKMLSTSGALGIFVGALL-SSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGY-GIAIAGYTLAVEFIAPESKAFAGSFIWVVWTVMVVCFSPIAYIILIvfassWRVLHIVIALPILASGTATlLWVPESPAFLIQQGKIEEAVKAVEWLVRLDGNagnnpRISLEAQEENVVQNTNDTKSSLwQTLSSLFSSKPclgrpTWMCTLLMAFAWFSVAFAYFALSLGVGSLPGNLYVNFILIIAVEAPSYVFTSPLADRIGRRACLVSTLGLGGVFCVLVGIIHSAGGadSAIITCALTGKFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAPFTEIIFGSEDS-S-YYALGIVATASAVLGVMLPETKM 456
                  467788889999..88899********966666688*****************986.679*****************************************997.67****************************************987666677*************99887769*******************************99888777777777777777655554415566666554322111458999****************************************************************************9865569999999**************************************************5555444.3.4456*****************95 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.58   2.6e+02      54      75 ..      10      32 ..       6      37 .. 0.71
   2 !   90.0  12.3     7e-29   3.2e-26      56     393 ..      71     423 ..      50     427 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.58
    TIGR00895 54 lGfllsag.LiGmvlGallfgpl 75
                  G++ls+g  +G+v+Ga+ +  +
  MMETSP1174-20130828|21032_1 10 YGIILSFGaTLGLVMGAFYLPSF 32
                 68888876257888888876554 PP

  == domain 2    score: 90.0 bits;  conditional E-value: 7e-29
    TIGR00895  56 fllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafg..Wrslflvggiipllll.lllikvLpEsikflvek.kpekvrki...lnaiapslqaeaqs........elaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvs..tlssptllllllvilG.lfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpil 393
                  +l ++g +G+ +Gall++ ++D +gRk+v +v+  + +   ++ al+ +v + +v+R+l g+G G   ++  +L++E+++   +a++ +++ v +++ ++  + +a +++ +f+  Wr+l +v + +p+l     +  ++pEs +fl+++ k e++ k    l +++ ++ ++++          +++++ +++   ++ + lf+ k     +  w+++ l+ ++ + ++     L+ + g    +  +  +l+ +  + + ++++ ladr+g++  l++ l l++vf vlv+   ++   + +++  ++ G ++v +  ++++++++e++pt+iR+ g g   +  r+  +i+p +
  MMETSP1174-20130828|21032_1  71 MLSTSGALGIFVGALLSS-MSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGYGI-AIAGYTLAVEFIAPESKAFAGSFIWVVWTVMVVCFSPIAYIILIVFAssWRVLHIVIA-LPILASgTATLLWVPESPAFLIQQgKIEEAVKAvewLVRLDGNAGNNPRIsleaqeenVVQNTNDTKSSLWQTLSSLFSSKPCLGRP-TWMCTLLMAFAWFSVAFAYFALSLGVGSLPGNLYVNFILIIAVEAPSYVFTSPLADRIGRRaCLVSTLGLGGVFCVLVGIihSAGGADSAIITCALTGkFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAPFT 423
                  6788999********976.69******************************************985.56789*****************************999999877776444******995.888875367889************855544444000455554444444442311112122222222222233344566666555555.49999*********9999999*****99999998888999999999***************777778889*******99855666778888899999956678999***********************************86 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5  15.7   5.6e-27   2.5e-24      96     506 ..      64     458 ..       5     462 .. 0.69

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 5.6e-27
    TIGR00879  96 asssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg..sgklvanntlgwriplgl.qlipalllllglfflPesprwLvekgkeeeArkslarl...rgeksedkelleelelikikreiekesvnks.gaelfslkkr..i.irrlllgvvlqafqQltGiNaimyYsptifenlGvst.dtallvsiivgavnvaaTfva.iflvdrfGRrtllliG.aagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgig.pvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkglt 506
                  +  ++  ++ ++  +G ++gal+++ +sd++grk+ + ++a +  +ga++ ++ +   +   ++v+Rvl Gig Gia a   l +  iAp++ + a +s++ +++t+  +v+  f+   + ++   +++wr++  + +l + + + + l+++Pesp +L+++gk eeA k++++l    g+ + ++++    e+ + +  ++++  ++s +++l sl+ +     r+  + ++l+af +++   a+ y++     +lGv +   +l+v++i+ +   a + v   +l dr+GRr +l+    +g ++c++v gi+   ++ +  +         +++ +  +a++i  +vv+v++sE+fp+++R++g+ +++aa+  a +i a ++ i++ +  +   ++   g   + a ++  ++lpetk  t
  MMETSP1174-20130828|21032_1  64 EDCWKNKMLSTSGALGIFVGALLSS-MSDNYGRKPVFVVGAYMA-AGALIGGALSPEVY--SYMVFRVLGGIGYGIAIAGYTLAVEFIAPESKAFA-GSFIWVVWTV--MVVC-FSpiAYIILIVFASSWRVLHIViALPILASGTATLLWVPESPAFLIQQGKIEEAVKAVEWLvrlDGNAGNNPRISL--EAQEENVVQNTNDTKSSlWQTLSSLFSSkpClGRPTWMCTLLMAFAWFSV--AFAYFAL----SLGVGSlPGNLYVNFILIIAVEAPSYVFtSPLADRIGRRACLVSTlGLGGVFCVLV-GIIHSAGGAD--S------AIITCALTGKFAVSISfAVVYVYASELFPTEIRSSGSGFCSAAARAATMI-APFTEIIFGS--EDS-SYYALGIV-ATASAVLGVMLPETKMTT 458
                  5556666666677788888988888.*********999887765.55555555555555..7****************************876543.4444455554..2222.22233444455799***87766566666778999*******************88877765111566666676665..4444555556666666667766666655433377888999********95..6777775....6888888889****998877777776666**************9955666666555.5444444443..3......3345555666666665469***********************99887765.5566666664..333.33333333.333344457889998766 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  10.1   3.1e-10   1.4e-07     205     466 ..      70     304 ..      60     310 .. 0.78
   2 !   25.9   3.4     1e-09   4.7e-07     599     734 ..     314     452 ..     311     459 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.1e-10
    TIGR01299 205 gllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalpsvsa.vvalttqpesprfllevgkhdeawmvlklvhdtnmrakgqpekvfsvtkiktikqidelieiesdtgtwyrrlfvrilsllyqvwltflrcfsyevreitlkltivwftlsfsyyglsv 466
                   +l +   lg++vga+l   ++d+ grk  +++   + +   +  ++      +++ r+l g+g g ai   ++   e++a e +    s++ + w +  v  + +a+ i+  +             swrv+ +v alp +++  ++l   pesp fl+++gk +ea   +  +   +  a  +p       +i    q++++++   dt +   +     ls l   + +   c+  +    tl +   wf+++f+y+ ls+
  MMETSP1174-20130828|21032_1  70 KMLSTSGALGIFVGALL-SSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGYGIAIA-GYTLAVEFIAPESKAFAGSFIWVVWTVMVVCFSPIAYIILIVFA-----------SSWRVLHIVIALPILASgTATLLWVPESPAFLIQQGKIEEAVKAVEWLVRLDGNAGNNP-------RISLEAQEENVVQNTNDTKSSLWQ----TLSSL---F-SSKPCLGRPTWMCTLLMAFAWFSVAFAYFALSL 304
                  577777889******87.689********99997655443333333333344456669********9996.589999*******************************9987653...........58***********98772566899*****************877776655554454444.......677889999999999998654322....22222...2.3357999999999***************99986 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1e-09
    TIGR01299 599 fvsflgtlav.lpgnivsallmdkigrlrmlagssvlsgvscffl....sfgtsesamiallclynglsia.awnaldvltvelypsdkratafgflnalcklaavl...giliftslvsitkaipillasavlvlgsllalklp 734
                  +v+f+  +av  p  + ++ l d+igr   l  +  l gv c ++    s g ++sa+i+  +l +  +++ ++  + v + el+p++ r+++ gf  a +++a+++     +if+s  s   a+ i+ + a  v    l++ lp
  MMETSP1174-20130828|21032_1 314 YVNFILIIAVeAPSYVFTSPLADRIGRRACLVSTLGLGGVFCVLVgiihSAGGADSAIITC-ALTGKFAVSiSFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIapfTEIIFGSEDSSYYALGIVAT-ASAV----LGVMLP 452
                  7999999999458889999***********************9763323568888988863.344545554368889999**********************9987622257899999998888887643.3223....334445 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.56   2.5e+02      94     110 ..      12      28 ..       5      35 .. 0.67
   2 !   32.7  10.9   3.3e-11   1.5e-08       5     140 ..      73     209 ..      70     210 .. 0.85
   3 ?    0.4   0.1      0.31   1.4e+02      11      46 ..     265     298 ..     260     315 .. 0.76
   4 !   20.1   6.5   2.5e-07   0.00011       3     139 ..     320     453 ..     316     454 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.56
    TIGR00880  94 agialgpilGpllGavl 110
                  +++++g+ lG+++Ga+ 
  MMETSP1174-20130828|21032_1  12 IILSFGATLGLVMGAFY 28 
                  45667777777777765 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 3.3e-11
    TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllfllpe 140
                   ++++  ++v+ l+  ++d +Grkpv +vg  + + + +  als  + + ++ r+l+G+g+++a++  +  +  i++e +  +   ++++ +++ + ++p++  +l+  a++wr+l +++al  l++  ++l+++pe
  MMETSP1174-20130828|21032_1  73 STSGALGIFVGALLSSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGYGIAIAGYTLAVEFIAPESKAFAGSFIWVVWTVMVVCFSPIAYIILIvFASSWRVLHIVIALPILASGTATLLWVPE 209
                  4555555555555555*************************************************98866666666666777777789999999999999999998877889***********************99 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.31
    TIGR00880  11 qlvvsplsglltdrvGrkpvllvglfifvlsqllfa 46 
                  q + s++s      +Gr   ++ +l+ f+ ++++fa
  MMETSP1174-20130828|21032_1 265 QTLSSLFSS--KPCLGRPTWMCTLLMAFAWFSVAFA 298
                  555666666..6668888888888888888888776 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 2.5e-07
    TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvgl....fifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllp 139
                   +a+ A + +++spl++    r+Gr+  l+ +l    +++vl  ++  ++   + +i + + + f+ +++++++  ++++++++e rs   g+ sa++ ++ +++p ++ +++        +++l+++a+++++l ++l +
  MMETSP1174-20130828|21032_1 320 IIAVEAPSYVFTSPLAD----RIGRRACLVSTLglggVFCVLVGIIHSAGGADSAIITCALTGKFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAP-FTEIIFGS--EDSSYYALGIVATASAVLGVMLPE 453
                  5677788999*******....******9996552222667777777777777788899999999****************************************98.57777766..5679***********999988754 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.3   1.1e+03     128     149 ..       5      26 ..       4      32 .. 0.86
   2 !    6.9   4.6    0.0013       0.6      52     202 ..      83     219 ..      71     233 .. 0.74
   3 !   36.4   2.0   1.4e-12   6.5e-10     233     399 ..     283     448 ..     242     449 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.3
    TIGR00883 128 gkrglygsfqqvgasvglllaa 149
                  gkr +yg + ++ga++gl+++a
  MMETSP1174-20130828|21032_1   5 GKRHVYGIILSFGATLGLVMGA 26 
                  7999999999999999999876 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0013
    TIGR00883  52 aivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlv.svvlvligLylRlkleEtpvfekekek 202
                  ++++  + D +GRk ++vv+  + + + +  +l P + +         ++ r++ G++ G  ++g +l ++E  +++ ++++gsf  v  +v ++  + +++++ +++         WR+  +v ++ +++ g +  l + E+p+f  ++ k
  MMETSP1174-20130828|21032_1  83 GALLSSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYS--------YMVFRVLGGIGYGIAIAGYTL-AVEFIAPESKAFAGSFIWVVWTVMVVCFSPIAYIILIVFA------SSWRVLHIViALPILASGTATLLWVPESPAFLIQQGK 219
                  6688999*************8876666666667787665........4789*************9865.6777777889*******99999988888888777776543......3577755431555666666666666777777666555 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 1.4e-12
    TIGR00883 233 iatsvlfYllttylasYlkktaklg.lsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsalless.sillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiyllllalis 399
                  ++t ++ + +   + +Y   ++++g l+ +  ++ + l+ ++ +    +++ l+driGrr++l+ +  l  ++ v++  +++ ++ + +++++  l+ +++v++ ++v+    +elfpte+R +g ++  + a ++   +ap+   ++ +   + +a+gi++++ a+++
  MMETSP1174-20130828|21032_1 283 MCTLLMAFAWFSVAFAYFALSLGVGsLPGNLYVNFI-LIIAVEAPSYVFTSPLADRIGRRACLVSTLGLGGVFCVLV-GIIHSAGgADSAIITCALTGKFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATM-IAPFTEIIFGSEDSSYYALGIVATASAVLG 448
                  344444333333344444444343313444444443.444445556678899*********9998888888888554.4555455588899999999999****************************9999888765.99999999999999999****999999986 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.9      0.25   1.1e+02      60     130 ..      71     134 ..      63     191 .. 0.64
   2 !   27.7   4.6     6e-10   2.7e-07     339     447 ..     315     423 ..     244     451 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.25
    TIGR00887  60 lvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGig 130
                  ++ +s+ +g  +g ll   ++d  grk v+ +   +   a +  als++      v   +++r+l g+G g
  MMETSP1174-20130828|21032_1  71 MLSTSGALGIFVGALLS-SMSDNYGRKPVFVVGAYMAAGALIGGALSPE------VYSYMVFRVLGGIGYG 134
                  56677777888887764.5678888888877666665555555555554......4556667777666555 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 6e-10
    TIGR00887 339 gnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsekgllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqla 447
                   n i+++a  +P Y +t  l d++GR+a  +    + +v+ v+++i +     ++ ++  +l+  Fa     a  +++ +e+FP+ +Rs + G   aa ++ ++ia ++
  MMETSP1174-20130828|21032_1 315 VNFILIIAVEAPSYVFTSPLADRIGRRACLVSTLGLGGVFCVLVGIIHSAGGADSAIITCALTGKFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAPFT 423
                  689*****************************************************************************************************99765 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   6.4   6.2e-08   2.8e-05      44     183 ..      71     210 ..      65     233 .. 0.76
   2 ?    0.6   1.7      0.14        66      58      83 ..     329     359 ..     315     460 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.2e-08
    TIGR00710  44 ltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysil.mlllalaPllapliGgyvlvfl.sWhaiFavlsligillvaliflllpeT 183
                  + +t+ +lg+ vg Ll   +sD yGRkpv  +g  + a + ++ als+ +  ++v R+l ++g  +a+  +  l+    a e      s++  ++++++   +p+    ++vf+ sW+ + +v++l  ++   +  l +pe 
  MMETSP1174-20130828|21032_1  71 MLSTSGALGIFVGALL-SSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGYGIAIA-GYTLAVEFIAPESKAFAGSFIwVVWTVMVVCFSPIAYIILIVFAsSWRVLHIVIALPILASGTATLLWVPES 210
                  5678889999999997.58********************************************988754.445555555543333333444267889999999999998899984699999999887666555555556665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.14
    TIGR00710  58 LllGplsDsyGRkpvl.....Llgllvfals 83 
                   +  pl+D+ GR+  l     L+g++   ++
  MMETSP1174-20130828|21032_1 329 VFTSPLADRIGRRACLvstlgLGGVFCVLVG 359
                  56779********998333333333332222 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  12.0   0.00027      0.12      49     363 ..      85     421 ..      72     426 .. 0.77
   2 ?   10.2   1.9   0.00013     0.059      51     169 ..     332     450 ..     320     485 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00027
    TIGR00881  49 vvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvva.iwnishnvggallpplv.llaialllswhvvfivpgiiaiivslilllllrdspq.svglpkleelrnee...keedkekkeeeltkkeillqyvlknkv.....lwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDk...............lfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilag 363
                  + +++sD ++ + ++ +g  ++a + ++ + s+ + + +++++l G+  g++    +  +    ++s+ + + + iw +   +   + p ++ ++ i +  sw+v+ iv ++  +  +   ll + +sp+  + ++k+ee  +     +  d +  ++ +   e+  ++v++n +     lw   l+ +f     +g  +W+ + l+    +s   a +a + + ++ l+G l   ++                   + +r   +  + + ++++ l+++ + + + +  ++ ++++  f v  + +++ v asel p ++  + +g+ + +a    ++a+
  MMETSP1174-20130828|21032_1  85 LLSSMSDNYGRKPVFVVGAYMAAGALIGGALSPEVYSYMVFRVLGGIGYGIAIAGYTLAVEFIAPESK-AFAGSfIWVVWTVMVVCFSP-IAyIILIVFASSWRVLHIVIALPILASGTATLLWVPESPAfLIQQGKIEEAVKAVewlVRLDGNAGNNPRISLEAQEENVVQNTNdtkssLWQ-TLSSLFSSKPCLGRPTWMCTLLMAFAWFSVAFAYFALS-LGVGSLPGNLYVNFILIIaveapsyvftspladRIGRRACLVSTLGLGGVFCVLVGIIHSAGGADSAIITCALTGKFAVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAP 421
                  67899******************************************999999988866666666655.44555145555555555555.551455667789*******99888888888888888888725789999999888779855555555566777777777777775422222554.57777777777888888888888887777666655544.5788888888887765545678888888886645566666777888999**********999999998888888889999*****************************999988886 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00013
    TIGR00881  51 gvvsDrvsarvflaigLilvaivnlflgfss...slwvliallalnGlf.qglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilll 169
                  + ++Dr++ r+ l + L l ++  +++g      +  + i+ +al+G f  ++ + +++ +  ++f+ + r +  ++ + +   +  ++p    +   ++ s+ + ++  gi+a   +++ ++
  MMETSP1174-20130828|21032_1 332 SPLADRIGRRACLVSTLGLGGVFCVLVGIIHsagGADSAIITCALTGKFaVSISFAVVYVYASELFPTEIRSSGSGFCSAAARAATMIAP----FTEIIFGSEDSSYYALGIVATASAVLGVM 450
                  556777777777777777777777777766655556667777777774414677777777777777777777777777777777777666....55566677777777777666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1484.88
//
Query:       MMETSP1174-20130828|21035_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1659.29
//
Query:       MMETSP1174-20130828|21038_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.24s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1174-20130828|21039_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   40.6   0.1    2.5e-11   40.5   0.1    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    3.9e-07   27.0   0.0    4.3e-07   26.8   0.0    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    5.9e-06   23.4   0.0    6.5e-06   23.2   0.0    1.0  1  TIGR02053 MerA: mercuric reductase
    8.5e-05   18.9   0.1    9.1e-05   18.8   0.0    1.0  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    0.00037   17.2   0.0    0.00049   16.8   0.0    1.2  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    0.00086   16.0   0.0    0.00097   15.8   0.0    1.2  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00096   15.6   0.1      0.001   15.5   0.1    1.0  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.001   14.4   0.1     0.0012   14.1   0.0    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0052   13.5   0.1       0.27    7.8   0.0    2.0  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0065   12.8   0.2      0.007   12.7   0.1    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0098   12.3   0.1      0.011   12.1   0.1    1.0  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
  ------ inclusion threshold ------
       0.01   12.5   0.0      0.012   12.3   0.0    1.1  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.011   12.1   0.0      0.011   12.1   0.0    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
      0.014   12.4   0.1      0.015   12.4   0.0    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.028   11.5   0.5      0.041   11.0   0.4    1.2  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family


Domain annotation for each model (and alignments):
>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1     9e-14   2.5e-11     440     523 ..       9      90 ..       4      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 9e-14
    TIGR03997 440 elkelgvevklGveadaelvlaekPDavvlatGsrparpdlagadservvtvrevltgeaevggrvlvvDelGfhqatsvaell 523
                  +l+   ve +lGv++da ++l+   D v+latG  p+  d++g d+++v+t  evl g++evg+rv vv   G   +  v+e+l
  MMETSP1174-20130828|21039_1   9 TLNGGSVEQRLGVRVDATALLEGGFDKVILATGVSPRTLDIPGGDHPKVLTYAEVLRGDVEVGHRVAVVGAGGI--GFDVSEFL 90 
                  567778999************************************************************98875..33455555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.6e-09   4.3e-07     106     189 ..       9      90 ..       2      96 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.6e-09
    TIGR01350 106 vikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelk.evpeslvivGgGviGvEfasif 189
                  +++G ++++++  v+v++++   +  ++++i+AtG +pr+l +    d+  v+t+ e+l+ + ev +++++vG+G iG +++ ++
  MMETSP1174-20130828|21039_1   9 TLNG-GSVEQRLGVRVDATALL-EGGFDKVILATGVSPRTLDI-PGGDHPKVLTYAEVLRGDvEVGHRVAVVGAGGIGFDVSEFL 90 
                  5544.67888888888888743.667*****************.6677778********9864899************9988765 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.4e-08   6.5e-06     129     185 ..      32      89 ..       4      94 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.4e-08
    TIGR02053 129 gakrvliAtGarpavPeipGLkeaeyltseelleldkip.eslvviGggaiavElaql 185
                  g ++v++AtG +p++ +ipG ++ ++lt  e+l  d    ++++v+G+g i+ +++  
  MMETSP1174-20130828|21039_1  32 GFDKVILATGVSPRTLDIPGGDHPKVLTYAEVLRGDVEVgHRVAVVGAGGIGFDVSEF 89 
                  5688*****************************98865549***********999876 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.3e-07   9.1e-05      96     159 ..      32      90 ..       7      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.3e-07
    TIGR02374  96 syDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraL 159
                   +Dk+ilatG +p  l ipG D+++v +y ++     l+   +  ++ av+G+G +G++ ++ L
  MMETSP1174-20130828|21039_1  32 GFDKVILATGVSPRTLDIPGGDHPKVLTYAEV-----LRGDVEVGHRVAVVGAGGIGFDVSEFL 90 
                  59***************************765.....666667778899999999999877665 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06   0.00049     100     172 ..      29      94 ..      15      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
    TIGR03385 100 yeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkerg 172
                   e  +Dk+il+tG +p++l+i+g + ++v t  ++  +      +  +  ++v+v+G+G ig ++ e l++ +
  MMETSP1174-20130828|21039_1  29 LEGGFDKVILATGVSPRTLDIPGGDHPKVLTYAEVLRG-----DV--EVGHRVAVVGAGGIGFDVSEFLTHEK 94 
                  5778*******************888888776655544.....44..55789***************998765 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06   0.00097     115     161 ..      34      80 ..      16      95 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
    TIGR04018 115 kkvvvatGyydipnllnvpGedlpkvshyyk..eahpyvkqkvvvvGgk 161
                   kv++atG+  +p++l++pG d pkv  y +       v+++v+vvG+ 
  MMETSP1174-20130828|21039_1  34 DKVILATGV--SPRTLDIPGGDHPKVLTYAEvlRGDVEVGHRVAVVGAG 80 
                  58******8..8***************9866223456688999999986 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   3.8e-06     0.001     303     365 ..      22      84 ..       4      90 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.8e-06
    TIGR03140 303 elesGevlka..ksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGi 365
                  +++  + l++  + vi+atG + r l++pG ++   k ++y     G +  g +vav+G G  G 
  MMETSP1174-20130828|21039_1  22 RVDATALLEGgfDKVILATGVSPRTLDIPGGDH--PKVLTYAEVLRGDVEVGHRVAVVGAGGIGF 84 
                  55555555543368****************985..6889*********************98886 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.4e-06    0.0012     593     681 ..       6      86 ..       4      94 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.4e-06
    TIGR03315 593 dlelvkkkGvefklGvsedltvdelkkegykyvvlaiGadkssklklkegne.rvlksleflkefkedktklklGkrvvvvGgGntamda 681
                  d++  +   ve +lGv   ++  +l + g++ v+la+G   +++l++ +g++ +vl   e l+       ++++G+rv+vvG+G +  d 
  MMETSP1174-20130828|21039_1   6 DVNTLNGGSVEQRLGVR--VDATALLEGGFDKVILATGVS-PRTLDIPGGDHpKVLTYAEVLR------GDVEVGHRVAVVGAGGIGFDV 86 
                  66667777788899975..55678999***********86.6788888764326666666664......46899**********999986 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00098      0.27     215     254 ..      18      57 ..       8      68 .. 0.78
   2 ?    4.0   0.0     0.014       3.9     140     164 ..      68      92 ..      65      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00098
    TIGR01317 215 eiGkdisaeelke.dfdavvlatGatkprdlpieGrelegi 254
                  ++G+++ a  l e  fd v+latG   pr l i+G +   +
  MMETSP1174-20130828|21039_1  18 RLGVRVDATALLEgGFDKVILATGV-SPRTLDIPGGDHPKV 57 
                  678899887766537*********7.69******9987665 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
    TIGR01317 140 krtGkkvavvGsGPaGlaaadqlnr 164
                  +  G++vavvG+G  G+  ++ l++
  MMETSP1174-20130828|21039_1  68 VEVGHRVAVVGAGGIGFDVSEFLTH 92 
                  5689************999888875 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.6e-05     0.007     439     520 ..      15      91 ..       7      98 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.6e-05
    TIGR03996 439 velrlgaavdaeeldaaraaGevvvlatGsvarplpapvdatvrvldaaevleaddalaeGpvvvidplGGpvgvavaeala 520
                  ve rlg  vda  l +     + v+latG ++r l +p  +  +vl  aevl +d  +++   vv     G +g  v+e+l+
  MMETSP1174-20130828|21039_1  15 VEQRLGVRVDATALLEG--GFDKVILATGVSPRTLDIPGGDHPKVLTYAEVLRGDVEVGHRVAVV--G-AGGIGFDVSEFLT 91 
                  66667777776666443..33579****************************9998776654444..2.3457777777766 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.1e-05     0.011     105     164 ..      35      92 ..      21      97 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
    TIGR03143 105 avliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltk 164
                   v++atG spr l  +G +    + ++y     G+   G  v v+G+G    + + flt+
  MMETSP1174-20130828|21039_1  35 KVILATGVSPRTLDIPGGDH--PKVLTYAEVLRGDVEVGHRVAVVGAGGIGFDVSEFLTH 92 
                  599**************986..6789**********************998888888886 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.3e-05     0.012     102     162 ..      34      92 ..      20      97 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.3e-05
    TIGR01292 102 kaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLsk 162
                  + vi+AtG ++r l+i+g ++   + ++y  v  g +  +++vavvG g    + + +L++
  MMETSP1174-20130828|21039_1  34 DKVILATGVSPRTLDIPGGDH--PKVLTYAEVLRGDVEVGHRVAVVGAGGIGFDVSEFLTH 92 
                  579**************9997..67899********************9998888888875 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.1e-05     0.011     153     203 ..      34      87 ..      11      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
    TIGR01423 153 eyillatgswpqmlkiegiel..cissneafyle.eapkrvltvgggyisvefa 203
                  + ++latg  p+ l+i+g ++  +++  e +  + e  +rv +vg g i  + +
  MMETSP1174-20130828|21039_1  34 DKVILATGVSPRTLDIPGGDHpkVLTYAEVLRGDvEVGHRVAVVGAGGIGFDVS 87 
                  679***************998445778888877668899******998887665 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.3e-05     0.015     131     183 ..      34      88 ..       8      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.3e-05
    TIGR01421 131 khiliatGgkpsipeniPGael..gldsdgffale.elPkrvvivGaGyiavelaG 183
                  +++++atG  p+++ +iPG +    l+  ++++ + e+ +rv++vGaG i+ +++ 
  MMETSP1174-20130828|21039_1  34 DKVILATGVSPRTL-DIPGGDHpkVLTYAEVLRGDvEVGHRVAVVGAGGIGFDVSE 88 
                  57899*********.****9862245677777765499************998765 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   0.00015     0.041     179     201 ..      63      85 ..      59      89 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00015
    TIGR03989 179 vkaadvkaGdtvvvvGiGGvGin 201
                  v ++dv++G+ v+vvG GG+G +
  MMETSP1174-20130828|21039_1  63 VLRGDVEVGHRVAVVGAGGIGFD 85 
                  7789*****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 299.98
//
Query:       MMETSP1174-20130828|21042_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|21040_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1286.89
//
Query:       MMETSP1174-20130828|21045_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1076.22
//
Query:       MMETSP1174-20130828|21047_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|21054_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|21049_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.6   0.5     0.0021   15.5   0.3    1.1  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3     5e-07    0.0021      60     135 ..       3      83 ..       1      98 [. 0.79

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 5e-07
    TIGR02521  60 ldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqq......feaAiedpkYeqpa 135
                  l+++    ++ lA+ +  l +  +   +++kA++++++  + l NY   L++ +++e+A +q      + +A+ ++++e+ +
  MMETSP1174-20130828|21049_1   3 LKTDFPASYMYLAVTLALLNDYPNSCTAYEKAMSMEEDHMNHL-NYAITLFNHGDIEKAREQhkcfqeLFQALDEQDVEHDW 83 
                  56677788999*************************9999877.6*********9999987622211144666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 455.13
//
Query:       MMETSP1174-20130828|21055_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   16.0  14.9    0.00043   15.9  10.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0012   14.4  12.8     0.0014   14.2   8.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.055   10.7   2.7      0.066   10.4   1.8    1.1  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
       0.26    8.2   7.9       0.43    7.5   5.5    1.5  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
       0.31    8.6   8.4       0.34    8.4   5.8    1.0  1  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  10.3   5.2e-07   0.00043     348     463 ..      10     122 ..       1     126 [] 0.24

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.2e-07
    TIGR02168 348 elkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                  +l+e+l sleae+e+   e+   ++ ++e+e+ +e+l+++  +le+++a+ +a   ++++e+ +l+++++ ++q+i +l k+++ a+++ ++lq+e+++l+ el +++   ++le+
  MMETSP1174-20130828|21055_1  10 DLSEKLRSLEAEVEA---ERCRHKRGEDEQERLVEALQADKVDLEQRVADRAAATVQMRKEVVALSRSLDYAQQNIATLTKQASVAREAEEALQGEVQKLNGELSSANRVTKDLEA 122
                  222222222222222...22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   8.9   1.7e-06    0.0014     379     500 ..       6     124 ..       2     126 .] 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-06
    TIGR02169 379 keaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqa 500
                  ++ + l e+l +l+ ++e+ + +++  + e++rl e    l+++  +l++ +++  ++  ++ +e+ +l   +  a+q++ +l ++ + a++  ++l+ e++kl+ els+++r  + leaq 
  MMETSP1174-20130828|21055_1   6 AAVRDLSEKLRSLEAEVEAERCRHKRGEDEQERLVEA---LQADKVDLEQRVADRAAATVQMRKEVVALSRSLDYAQQNIATLTKQASVAREAEEALQGEVQKLNGELSSANRVTKDLEAQV 124
                  5556666777777777777777777777777777554...4567778888999999999999999999999999999999999999999999999999999999999999999999999986 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.8     8e-05     0.066     159     238 ..      13      93 ..       5     124 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8e-05
    TIGR00570 159 ekkrlllqkleeeekkkk..kkdkqalldeLetsdldvaeliaehkeksvklekeveklksekkatfstgikvgaqnslvpv 238
                  ek r l+ ++e e+  +k  + +++ l++ L+  + d+++ +a+ ++ +v+++kev  l    ++  +++i + +++++v  
  MMETSP1174-20130828|21055_1  13 EKLRSLEAEVEAERCRHKrgEDEQERLVEALQADKVDLEQRVADRAAATVQMRKEVVALS-RSLDYAQQNIATLTKQASVAR 93 
                  45555555555555444411456778******************9999999999998776.455566667666444444443 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.5   0.00053      0.43     174     279 ..      13     121 ..       2     126 .] 0.71

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00053
    TIGR00996 174 eglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqv...rdllaenrpnLaqalanLasvltllvdyspele 279
                  e+l++l a++ + +   ++  d   r++++l +++ +l++ +++ a+++ q++++  aL++ l+ +++ +a++   +++ +e+++ L+ ++++L+  l+ +++  ++le
  MMETSP1174-20130828|21055_1  13 EKLRSLEAEVEAERCRHKRGEDEQERLVEALQADKVDLEQRVADRAAATVQMRKEVVALSRSLDYAQQNIATLtkqASVAREAEEALQGEVQKLNGELSSANRVTKDLE 121
                  5555555555555555555666777899999999999999999999999999998888888777776655554111457788888999999999988888888777776 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.8   0.00042      0.34      69     178 ..       2     112 ..       1     120 [. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00042
    TIGR02479  69 Rkldwvprslrkkakkleeaieelearlgrepteee.iaeelgldlkevrkaleeinaeslvsldellesedeelsladliedkksedpeeelereelkeklaeaiekLse 178
                  R++ ++ r l +k ++le ++e+ + r++r   e+e + e+l+ d  +++++  + +a+ +++ +e+ + + +    +++i++ ++++   + ++e+l+ ++++   +Ls 
  MMETSP1174-20130828|21055_1   2 RSHSAAVRDLSEKLRSLEAEVEAERCRHKRGEDEQErLVEALQADKVDLEQRVADRAAATVQMRKEVVALSRSLDYAQQNIATLTKQASVAREAEEALQGEVQKLNGELSS 112
                  8889999***************99999999766554499*****************9999999999999877765567778887777778888888888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       428  (0.104339); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|21057_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 796.65
//
Query:       MMETSP1174-20130828|21059_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-21   71.2   0.0    1.3e-08   32.4   0.0    4.0  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0043        18      24      35 .]       2      13 ..       2      13 .. 0.91
   2 !   32.4   0.0     3e-12   1.3e-08       1      35 []      14      48 ..      14      48 .. 0.96
   3 !   26.3   0.0   2.6e-10   1.1e-06       2      35 .]      50      83 ..      49      83 .. 0.97
   4 !    4.3   0.0    0.0027        11       1      20 [.      84     103 .]      84     103 .] 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0043
    TIGR00756 24 deMkergivPda 35
                 +eM+++g+ Pd+
  MMETSP1174-20130828|21059_1  2 EEMQAHGLTPDV 13
                 69********96 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 3e-12
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++++ is + kagr+eeAl+l+ +M+ +g++P++
  MMETSP1174-20130828|21059_1 14 ISFSSAISVCQKAGRWEEALRLLSDMRVQGVEPNV 48
                 5899*****************************96 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 2.6e-10
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                 +y++ is++ k  ++e+Alel+ eM+e+g+ P++
  MMETSP1174-20130828|21059_1 50 SYSSAISACEKGLQWEKALELLVEMREQGVAPNV 83
                 7*******************************96 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0027
    TIGR00756   1 vtyntlisglckagrveeAl 20 
                  ++y++ is++ k  ++e+Al
  MMETSP1174-20130828|21059_1  84 FSYSAAISACEKGLQWEKAL 103
                  58***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|21062_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1174-20130828|21063_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|21066_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 577.45
//
Query:       MMETSP1174-20130828|21067_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1174-20130828|21064_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.55
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|21065_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1174-20130828|21071_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|21076_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   13.6   0.0       0.16    7.7   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0   0.00056       2.3     129     160 ..       3      34 ..       1      39 [. 0.82
   2 !    7.7   0.0     4e-05      0.16     114     150 ..      53      89 ..      37      94 .] 0.78

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00056
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasvear 160
                  t+g  +li+ ++    e+ ++Lle ga+v ar
  MMETSP1174-20130828|21076_1   3 TNGANPLIMTAQFGHPETARVLLEHGADVDAR 34 
                  57788999999999999999999999999887 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 4e-05
    TIGR00870 114 ltlselandestseftkgitalilAihkqnyeivklL 150
                   +  +l +d + s  ++g+t+l +A ++   eiv++L
  MMETSP1174-20130828|21076_1  53 AARVFLEFDADESISFNGKTPLAIARERHRDEIVQML 89 
                  3334788899999999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 375.97
//
Query:       MMETSP1174-20130828|21078_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1174-20130828|21075_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-06   23.4   0.0    2.8e-05   21.9   0.0    1.7  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
    7.4e-05   20.1   0.3    0.00026   18.3   0.1    1.9  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00046   17.5   0.0    0.00072   16.9   0.0    1.4  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.43   5.9e+02      83     107 ..       3      27 ..       1      30 [. 0.81
   2 !   21.9   0.0     2e-08   2.8e-05      17      74 ..      48     105 ..      35     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.43
    TIGR00249  83 diglvadyleelkeegvksvllvsH 107
                  di   +++ ++ k+ g  s+l v H
  MMETSP1174-20130828|21075_1   3 DITRGQALVKAAKDTGLDSLLFVRH 27 
                  6777778888899999999999998 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2e-08
    TIGR00249  17 sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadald..esklev 74 
                   D+ R Lt+kG ++    ++w  ++ v+   i+ Sp +RA +ta  ++ +++  e+ +e+
  MMETSP1174-20130828|21075_1  48 DDQMRTLTQKGWEQCYSASEWFTQIYVR--AIMSSPARRAADTAMAMKAQIEteEKGAET 105
                  6999******************998766..7**************999998854444444 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.9e-07   0.00026      23      70 ..      53     100 ..      22     115 .. 0.85
   2 ?   -1.4   0.0      0.21   2.9e+02     135     158 ..     174     197 ..     168     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 1.9e-07
    TIGR03162  23 pLaekgeeqaaalrekledvkfdavvsSplsRcrelAellaeklklpi 70 
                   L++kg+eq+ ++ e +++  + a++sSp +R++++A +++++ +++ 
  MMETSP1174-20130828|21075_1  53 TLTQKGWEQCYSASEWFTQIYVRAIMSSPARRAADTAMAMKAQIETEE 100
                  58999*********************************9997666554 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.21
    TIGR03162 135 ekenvlivtHgGvirallahllgl 158
                  ++  +++++H+  + a++  + ++
  MMETSP1174-20130828|21075_1 174 RGTCIAVFGHAVFLNAIAYVVSNA 197
                  567889999999999988766554 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.3e-07   0.00072      26      74 ..      53     101 ..      21     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.3e-07
    TIGR03848  26 eLderGreqaaalaerladlpiaaivssPlercretveaiaeargleva 74 
                  +L+++G eq  +++e ++++ ++ai+ssP +r+ +t+ a+ ++ ++e +
  MMETSP1174-20130828|21075_1  53 TLTQKGWEQCYSASEWFTQIYVRAIMSSPARRAADTAMAMKAQIETEEK 101
                  5899*********************************999888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 896.75
//
Query:       MMETSP1174-20130828|21079_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|21077_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.8   0.0    1.1e-05   22.9   0.0    2.1  2  TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein


Domain annotation for each model (and alignments):
>> TIGR03276  Phn-HD: phosphonate degradation operons associated HDIG domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.6e-09   1.1e-05      24      60 ..      75     111 ..      53     129 .. 0.87
   2 ?    0.5   0.0      0.02        81     134     176 ..     155     198 ..     150     201 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.6e-09
    TIGR03276  24 vsqleHalqcatlAeaagadeelvvAalLHDiGHLle 60 
                  +  +eH lq+at A  + a++e+vvAal+HDiG +++
  MMETSP1174-20130828|21077_1  75 LNLYEHGLQTATRAFFDNATSEMVVAALFHDIGEVFS 111
                  5668*****************************8765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.02
    TIGR03276 134 eeaaafekkpaaedairL.RrlDdlaKeeglelpdldhflelva 176
                  ++ + f+ +p+ ++++ +  r+D+ + ++g + ++ ++fl+lv 
  MMETSP1174-20130828|21077_1 155 HQRDVFKDHPYYQETVDFcHRWDQSSFDMGYPSMNESEFLPLVY 198
                  677889999**9999997479****9999999988888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|21073_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.51
# Mc/sec: 178.57
//
Query:       MMETSP1174-20130828|21084_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|21086_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-05   19.7   0.0    7.7e-05   19.7   0.0    1.0  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
     0.0013   16.1   0.0     0.0014   15.9   0.0    1.0  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.7e-08   7.7e-05     275     324 ..      30      79 ..      15      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.7e-08
    TIGR02824 275 iaaeleekvwpllaegkvrpvidkvfpledaakAhellessehiGKivLt 324
                  ++ +  e++  ++a+g +r+   +v+ ++ +++Ah+l++s++ +GKiv++
  MMETSP1174-20130828|21086_1  30 VIGAYLEQINQWVAAGDIRVAKVTVMGMDRISEAHKLIQSGSSVGKIVIR 79 
                  45556678999*************************************96 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     7e-07    0.0014     284     333 ..      32      78 ..      10      80 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7e-07
    TIGR02817 284 hellnevaelvdeGkikttlaetlGainaanlkrahaliesgkarGkivl 333
                     l+++ + v +G i+ +   ++G    +++ +ah+li+sg + Gkiv+
  MMETSP1174-20130828|21086_1  32 GAYLEQINQWVAAGDIRVAKVTVMG---MDRISEAHKLIQSGSSVGKIVI 78 
                  467999***********88766666...599******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1174-20130828|21085_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.7   0.0     0.0019   15.5   0.0    1.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.6e-07    0.0019     112     174 ..      20      84 ..       4      86 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.6e-07
    TIGR03162 112 pgGEsvadfsqRveefleelake.ekenvlivtHgGvirallahllgl.pleqllsieveygsit 174
                   g E va++ +R  ++++ l ++ +k+++++ +H+ +i+++ + + +  ++ ++ s ++++g++ 
  MMETSP1174-20130828|21085_1  20 DGVEPVAAVCARLRRLVDFLEARhAKKTIALCAHADTIQIFQCWMAQStDVRAFSSYRFKNGEVR 84 
                  4569****************99999****************998766648888888999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1174-20130828|21080_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1174-20130828|21091_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|21090_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1020.72
//
Query:       MMETSP1174-20130828|21093_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|21094_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 816.91
//
Query:       MMETSP1174-20130828|21102_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1174-20130828|21105_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1174-20130828|21106_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1423.60
//
Query:       MMETSP1174-20130828|21110_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1174-20130828|21111_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|21112_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|21115_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-15   54.8   1.0    1.4e-15   54.7   0.7    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    9.2e-05   19.3   0.0    0.00011   19.1   0.0    1.0  1  TIGR00887 2A0109: phosphate:H+ symporter
    0.00017   18.6   0.1    0.00019   18.5   0.1    1.1  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
  ------ inclusion threshold ------
        1.1    7.3   7.8       0.11   10.6   0.8    2.2  2  TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.7   1.3e-18   1.4e-15     402     509 ..      23     135 ..       2     136 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 1.3e-18
    TIGR00879 402 vtgsskaa.sivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen....sigqgvvFiffgalnvlalilvyfflpetkgltlee 509
                   ++ ++a+ s+++++ ++ f++ y l+ gp  w+l+ E+fp ++R +g ++a a++  ++f ++ll+  +        ++ g +F +  + +++++i++  ++pet+ +tle 
  MMETSP1174-20130828|21115_1  23 LNDDDTASlSVLVMTALCCFVFSYDLSYGPQTWCLLPELFPAQFRHAGNTLALAVSSGSAFCVSLLISWLYHRnsssYAMDGSIFAVLCLGSFAGAIFCANCIPETSRRTLEA 135
                  233445555************************************99998888887777777777766555555566888886777776667789999*************95 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     1e-07   0.00011     395     500 ..      34     137 ..      18     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1e-07
    TIGR00887 395 lalyvlaqfFa....nFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllG.ilftlLiPetkgksleels 500
                  l++ +l+ f +     +GP   t+ +  e+FPa +R  +  ++ a+    a   +l++s l ++++++      ++ + ++ +++l  + G i+++  iPet +++le  s
  MMETSP1174-20130828|21115_1  34 LVMTALCCFVFsydlSYGPQ--TWCLLPELFPAQFRHAGNTLALAVSSGSAFCVSLLISWLYHRNSSSY-----AMDGSIFAVLCLGSFAGaIFCANCIPETSRRTLEAAS 137
                  55555544433122258997..455556*******************999*************888874.....456788899999999994456789*********9765 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.8e-07   0.00019     317     382 ..      31      97 ..       5     115 .. 0.66

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.8e-07
    TIGR00883 317 sillvlllllllalivamytgvma.allaelfptevRytgvslaynlasviggglapviaaaLvalt 382
                    +lv+++l+++ + +++ +g+++  ll+elfp++ R +g +la +++s  +  ++ +i+    +++
  MMETSP1174-20130828|21115_1  31 LSVLVMTALCCFVFSYDLSYGPQTwCLLPELFPAQFRHAGNTLALAVSSGSAFCVSLLISWLYHRNS 97 
                  4567778889999999999999873679************999998876554444444443333333 PP

>> TIGR04086  TIGR04086_membr: putative membrane protein, TIGR04086 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.16   1.7e+02      33      48 ..      27      42 ..       2      50 .. 0.52
   2 ?   10.6   0.8    0.0001      0.11       9      57 ..      77     124 ..      69     129 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.16
    TIGR04086 33 kslslliliililsvf 48
                 ++ sl +l++++l++f
  MMETSP1174-20130828|21115_1 27 DTASLSVLVMTALCCF 42
                 3344444444444444 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
    TIGR04086   9 valiltlllllllallltftdlsekslslliliililsvfvGGfvagkk 57 
                  v+   +++++ll+++ l+  + s  +++  i+++l+l++f+G+++++  
  MMETSP1174-20130828|21115_1  77 VSSGSAFCVSLLISW-LYHRNSSSYAMDGSIFAVLCLGSFAGAIFCANC 124
                  444445555555554.45556677788999**************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|21116_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|21118_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 762.60
//
Query:       MMETSP1174-20130828|21119_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 1694.57
//
Query:       MMETSP1174-20130828|21126_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|21128_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1282.18
//
Query:       MMETSP1174-20130828|21129_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 762.60
//
Query:       MMETSP1174-20130828|21131_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   23.4   0.1    8.3e-06   23.2   0.0    1.2  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     2e-09   8.3e-06     158     255 ..       8     103 ..       4     163 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2e-09
    TIGR03896 158 aksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsfl..nsdlaatatvkavealvlLaidkeelaakLqaDvala 255
                  +  G+ +   +g++l+keg    +++il +Ge++++  ++g  +  + +  G ++Ge +f+  +sd+a +a v a  +++ L+   +el++ +  D +l 
  MMETSP1174-20130828|21131_1   8 NSGGTWHSAKSGEILVKEGSISHQVHILAKGEVQIM--KKGCRT--AVLGPGALIGEFAFImqDSDNAHSADVVANGDVEYLTFTYQELQKAVALDSSLN 103
                  5568889999*********************98876..556655..55889********99556677789*******************99999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 630.97
//
Query:       MMETSP1174-20130828|21134_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1174-20130828|21136_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 859.71
//
Query:       MMETSP1174-20130828|21137_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1174-20130828|21135_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.8   0.0      0.033   12.4   0.0    1.7  1  TIGR03829 YokU_near_AblA: uncharacterized protein, YokU family
       0.18   10.1   7.3       0.15   10.3   0.4    3.2  3  TIGR02501 type_III_yscE: type III secretion system protein, YseE family


Domain annotation for each model (and alignments):
>> TIGR03829  YokU_near_AblA: uncharacterized protein, YokU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.6e-05     0.033      35      74 ..     117     156 ..     105     165 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.6e-05
    TIGR03829  35 siscsscgleyqedevvkeiedqlllvdekklPeevsyee 74 
                    s ++  l+++++ vv eie+q++++ + ++   + y e
  MMETSP1174-20130828|21135_1 117 GTSPKHVALKHVDEAVVSEIEQQIIVLCQARIKTIMKYSE 156
                  55678999*******************9999998888876 PP

>> TIGR02501  type_III_yscE: type III secretion system protein, YseE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2     0.079   1.6e+02       1      25 [.      90     114 ..      90     116 .. 0.79
   2 ?    0.7   0.0     0.074   1.5e+02       7      22 ..     124     140 ..     123     153 .. 0.84
   3 ?   10.3   0.4   7.5e-05      0.15       6      50 ..     168     212 ..     165     215 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.079
    TIGR02501   1 iTeLEdrLskadtaanalierLeaa 25 
                  +TeL ++L++    ++ + + +++a
  MMETSP1174-20130828|21135_1  90 MTELNEKLKERGDKRKRIAANMNRA 114
                  9999999999766688887777776 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.074
    TIGR02501   7 rLskadta.analierL 22 
                  +L+++d+a + ++ +++
  MMETSP1174-20130828|21135_1 124 ALKHVDEAvVSEIEQQI 140
                  599*****999999986 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 7.5e-05
    TIGR02501   6 drLskadtaanalierLeaalaeikeqlsrggdpqqYqelqllad 50 
                  d++s+ d  ++ l++++++ ++++  +   g+d+++Y +l  +++
  MMETSP1174-20130828|21135_1 168 DEISGCDSKIQVLKKQIRKRRKKLYGKKGLGKDLEHYSQLLHQSE 212
                  789999999****************************99977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1151.90
//
Query:       MMETSP1174-20130828|21138_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 983.53
//
Query:       MMETSP1174-20130828|21139_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-34  115.0   0.1      9e-34  114.8   0.1    1.0  1  TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00209  galT_1: galactose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.1   2.2e-37     9e-34     274     347 ..       2      80 ..       1      82 [. 0.93

  Alignments for each domain:
  == domain 1    score: 114.8 bits;  conditional E-value: 2.2e-37
    TIGR00209 274 sfpysmglhaapln.....geenehsqlhahfyppllrsatvrkflvgyellgetqrdltaeqaaerlralseihyker 347
                  s+pysmg+h+ap+       ++ +h+qlha +yppllrsatvrkf+vgye+l+e+qrdlt e aa rl+al e+hy ++
  MMETSP1174-20130828|21139_1   2 SMPYSMGWHGAPYPttaadQDNYDHWQLHAVYYPPLLRSATVRKFMVGYEMLAEQQRDLTPETAAARLKALGEVHYYQS 80 
                  89**********976665567889****************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 454.63
//
Query:       MMETSP1174-20130828|21140_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 404.77
//
Query:       MMETSP1174-20130828|21142_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|21144_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1174-20130828|21145_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 579.60
//
Query:       MMETSP1174-20130828|21148_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 632.45
//
Query:       MMETSP1174-20130828|21150_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.1   0.1      0.018   12.0   0.1    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.3e-06     0.018     127     265 ..      36      80 ..      17      96 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.3e-06
    TIGR01628 127 kSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeRe 265
                   S g ++++f+d  +A+ A++  Ng + n+k    g+ +++++r                                                                                              +
  MMETSP1174-20130828|21150_1  36 DSEGRAYIRFDDSRTARRAVDGCNGEASNKKVAGRGQKQREKKR----------------------------------------------------------------------------------------------Q 80 
                  34444555555555555555555554444444444433333333..............................................................................................2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 372.87
//
Query:       MMETSP1174-20130828|21152_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|21157_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 907.83
//
Query:       MMETSP1174-20130828|21162_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 664.07
//
Query:       MMETSP1174-20130828|21165_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.69
# Mc/sec: 124.34
//
Query:       MMETSP1174-20130828|21166_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|21169_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|21170_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|21177_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|21173_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1438.68
//
Query:       MMETSP1174-20130828|21180_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.6   0.1      0.037   12.0   0.1    1.3  1  TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH


Domain annotation for each model (and alignments):
>> TIGR03011  sulf_tusB_dsrH: sulfur relay protein TusB/DsrH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.1e-06     0.037       2      59 ..      37      94 ..      36     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.1e-06
    TIGR03011  2 hlvkkSpfekealesclrllqegdavlLiqDgVyaalegnellkelkkasvklyalke 59
                 ++v++S   +++le + r lqe++a +  +++V+a++++ + l  + +++ +l + + 
  MMETSP1174-20130828|21180_1 37 VTVEHSSLVRKELEPLTRALQEKSAAMVGEESVLALMQEARELIDILQNERRLCVFAS 94
                 5899**999999**************************99888777777755555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|21183_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|21187_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 215.20
//
Query:       MMETSP1174-20130828|21186_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 744.80
//
Query:       MMETSP1174-20130828|21191_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 899.18
//
Query:       MMETSP1174-20130828|21198_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|21199_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|21205_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.46
# Mc/sec: 175.03
//
Query:       MMETSP1174-20130828|21206_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|21200_1  [L=1146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 2965.87
//
Query:       MMETSP1174-20130828|21208_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 559.63
//
Query:       MMETSP1174-20130828|21209_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.0   2.5      0.048   10.8   1.7    1.1  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   1.2e-05     0.048       8      36 ..      50      81 ..      43      86 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.2e-05
    TIGR00837  8 gtviGaGmlalPvsta...gawfivsllllil 36
                   ++GaGmlalP  +a   g++++++l l+il
  MMETSP1174-20130828|21209_1 50 KCIVGAGMLALPAGMAagkGTGYLPALALVIL 81
                 5689********99874445677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 382.77
//
Query:       MMETSP1174-20130828|21212_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-20   70.6   0.0    2.2e-20   70.6   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    3.3e-10   36.1   0.0    3.4e-10   36.0   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.1e-23   2.2e-20     215     290 ..       1      77 [.       1     132 [. 0.89

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1.1e-23
    TIGR00955 215 kgktviltiHQPsselfelfdkiillae.GrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesr 290
                  kg  +i+++HQPs  l+++f+ ++ll + G++v+lG+ ++a+ +f+el +++P   npadF ++v+a ++++  es 
  MMETSP1174-20130828|21212_1   1 KGANIITVLHQPSFPLYQMFTTVLLLGKgGQTVFLGKSDDALRYFTELHFKIPPMINPADFFMDVIAGKHKRGDESN 77 
                  6899**********************76379************************************9998877763 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.6e-13   3.4e-10     952    1022 ..       2      67 ..       1      98 [. 0.88

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.6e-13
    TIGR00956  952 GqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevig 1022
                   G  i+  +HqPs  l + F  +Lll kGG+tv+ G+    s   + YF +    k+p+  nPA++ ++vi+
  MMETSP1174-20130828|21212_1    2 GANIITVLHQPSFPLYQMFTTVLLLGKGGQTVFLGK----SDDALRYFTEL-HFKIPPMINPADFFMDVIA 67  
                   889999***************************985....788899**876.469**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|21210_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04    9.8   0.2       0.66    5.7   0.0    2.7  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0    0.0069        28     132     152 ..      53      73 ..      46      75 .. 0.91
   2 ?    5.7   0.0   0.00016      0.66     129     201 ..      84     175 ..      80     203 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.0069
    TIGR00870 132 italilAihkqnyeivklLle 152
                   t+l+ A+ k  + ivk Ll+
  MMETSP1174-20130828|21210_1  53 STPLHKAALKGHISIVKFLLQ 73 
                  69*****************98 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00016
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasve............arakgdefv......ksqekdslyh.gespLnlaaclasesivsllsedp 201
                  + g tal+ A++     + +lLl+kga+              a  +g+e v      + +   +l h g  pL  aa+ +  ++v+ l +dp
  MMETSP1174-20130828|21210_1  84 SSGVTALHQAAQGGHADVCSLLLDKGADPLkanvvlqtplhkASFEGHEAVvnllldRGSSAAVLDHeGLTPLHHAAAGGRHAVVDRLCQDP 175
                  57899999999999999999999999972223333333333333333333355555555555555554455666666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|21214_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|21222_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|21219_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.7   0.3    3.5e-07   27.9   0.2    1.3  1  TIGR01353 dGTP_triPase: putative dGTPase
    8.8e-06   23.7   0.1    2.5e-05   22.2   0.1    1.8  1  TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
    2.4e-05   22.0   0.3    5.4e-05   20.8   0.2    1.6  1  TIGR00277 HDIG: uncharacterized domain HDIG
  ------ inclusion threshold ------
       0.01   13.4   0.1      0.084   10.4   0.0    2.1  2  TIGR00295 TIGR00295: TIGR00295 family protein


Domain annotation for each model (and alignments):
>> TIGR01353  dGTP_triPase: putative dGTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   3.4e-10   3.5e-07      36     105 ..     107     175 ..      87     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 3.4e-10
    TIGR01353  36 vRtRLtHSLEvaqvgrsiakeiksraeleleeklederlvetacLaHDiGnPPFGHaGEralnklmrekg 105
                   +tR  HS+ va  + + ++++ +  + e e + +de  v  a+L HDiG+ P+ H+ E+ +n+ + +k 
  MMETSP1174-20130828|21219_1 107 SHTRKEHSIGVAHLAGEFVQHLRQ-IQPEYEINDDDELCVRLAGLLHDIGHGPYSHMFEEFMNDDVTKKR 175
                  689****************99988.799999889899999********************9997665544 PP

>> TIGR01596  cas3_HD: CRISPR-associated endonuclease Cas3-HD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.4e-08   2.5e-05       2      80 ..     111     200 ..     111     240 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.4e-08
    TIGR01596   2 keHlldvaavaellknlreklaekig...elrellklaallHDlGK..atpaFQkkl......elkeeeegkkkevrHsllSalllydll 80 
                  keH+ +va +a+++ + +++++ +++   + + +++la+llHD+G   +++ F + +      + ++ ee ++++  H++ S  ll+  +
  MMETSP1174-20130828|21219_1 111 KEHSIGVAHLAGEFVQHLRQIQPEYEindDDELCVRLAGLLHDIGHgpYSHMFEEFMnddvtkKRRNTEETEPEKWTHEIMSTKLLKLAI 200
                  69**********666666666666667777**************854499999999999999999999999999999******9998766 PP

>> TIGR00277  HDIG: uncharacterized domain HDIG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   5.3e-08   5.4e-05       7      51 ..     112     173 ..     108     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5.3e-08
    TIGR00277   7 eHslevaklaealae.........elg.advelarrgaLlHDIGKaktregfie.......k 51 
                  eHs+ va+la +  +         e++  d+  +r ++LlHDIG    + +f+e       k
  MMETSP1174-20130828|21219_1 112 EHSIGVAHLAGEFVQhlrqiqpeyEINdDDELCVRLAGLLHDIGHGPYSHMFEEfmnddvtK 173
                  7************99899888866666778889***********998888888877765440 PP

>> TIGR00295  TIGR00295: TIGR00295 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   8.2e-05     0.084      14      64 ..     110     166 ..     101     179 .. 0.75
   2 ?    0.0   0.0      0.13   1.4e+02      57      76 ..     278     298 ..     249     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 8.2e-05
    TIGR00295  14 vvehclavakvalelaeeikkk..gyevdve...lvekGallhdiGrarthg.veha 64 
                    eh++ va+ a e+ +++++    ye++ +    v+  +llhdiG    +  +e +
  MMETSP1174-20130828|21219_1 110 RKEHSIGVAHLAGEFVQHLRQIqpEYEINDDdelCVRLAGLLHDIGHGPYSHmFEEF 166
                  579**************9997622577633333369**********87544336665 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.13
    TIGR00295  57 rthg.vehavkgaeilrklGv 76 
                  +t g +   +k a+il ++G 
  MMETSP1174-20130828|21219_1 278 KTTGaISRIIKCARILTREGK 298
                  3445599999******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 2065.63
//
Query:       MMETSP1174-20130828|21230_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1174-20130828|21228_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 954.38
//
Query:       MMETSP1174-20130828|21225_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-15   52.5   0.1    1.7e-14   51.7   0.1    1.4  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.1     4e-18   1.7e-14      21      97 ..     122     195 ..     108     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 4e-18
    TIGR03677  21 aretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaiv 97 
                  a+    ik G   vt  +e   aklv ia dveP e+v++lpalc++ +ipy  vk+k+ lG+ +  + ++a   i 
  MMETSP1174-20130828|21225_1 122 AKAPLAIKFGLKHVTSLIEEKRAKLVCIASDVEPIELVVWLPALCKKMGIPYCIVKNKARLGALIHQKTTTA---IC 195
                  566667999*****************************************************9876544333...33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|21233_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|21232_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1178.00
//
Query:       MMETSP1174-20130828|21235_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-16   55.6   0.0    1.2e-15   55.4   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.1e-15   54.1   0.0    3.9e-15   53.8   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.6e-11   42.2   0.0    1.8e-11   42.1   0.0    1.0  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    9.1e-10   35.4   0.0      1e-09   35.3   0.0    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    8.6e-06   22.6   0.0    1.5e-05   21.8   0.0    1.4  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.6e-05   21.9   0.0    3.9e-05   21.2   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.2e-05   20.7   0.0    3.6e-05   20.5   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.021   11.6   0.0      0.021   11.6   0.0    1.0  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.3e-18   1.2e-15     217     293 ..      53     129 ..      32     134 .. 0.91

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 2.3e-18
    TIGR01622 217 iadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikv 293
                   a ++LYvGn+      ++Lr+ Fe  G + ++++ kD+ t  skG+G +  s aee+  A+ +lNG  l GR+i v
  MMETSP1174-20130828|21235_1  53 EAIRRLYVGNMNWKTQMKKLRNHFEQVGTVTQMKIIKDQATSMSKGWGIVSLSSAEETLTAIDELNGSKLDGRNIIV 129
                  4789**********************************************************************987 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   7.5e-18   3.9e-15     281     358 ..      51     129 ..      34     131 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 7.5e-18
    TIGR01628 281 ekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                  + +    lYv N++ + + +kLr++Fe++G++t +k++ d ++ +Skg+G V+ ss+ee   A+ el+g  l+g+ ++v
  MMETSP1174-20130828|21235_1  51 SGEAIRRLYVGNMNWKTQMKKLRNHFEQVGTVTQMKIIKDqATSMSKGWGIVSLSSAEETLTAIDELNGSKLDGRNIIV 129
                  5556678*********************************7789*****************************998887 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.4e-14   1.8e-11     271     343 ..      57     130 ..      33     137 .] 0.88

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3.4e-14
    TIGR01661 271 cifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                   ++v n+  +t+ + l   f + G+v+++kii+d  t   kG+g vs++  +e+ +ai  lnG +l +r + v 
  MMETSP1174-20130828|21235_1  57 RLYVGNMNWKTQMKKLrNHFEQVGTVTQMKIIKDQATSMSKGWGIVSLSSAEETLTAIDELNGSKLDGRNIIVR 130
                  5899999999999888789************************************************9988775 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.9e-12     1e-09     292     372 ..      51     131 ..      21     136 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.9e-12
    TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                  + +   +ly+gn+  + + +++++  e+ G +   ++iKd+at  sKG++ +    +  t  Ai  LnG kl ++ + v+ 
  MMETSP1174-20130828|21235_1  51 SGEAIRRLYVGNMNWKTQMKKLRNHFEQVGTVTQMKIIKDQATSMSKGWGIVSLSSAEETLTAIDELNGSKLDGRNIIVRE 131
                  556778******************************************************************999998885 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     3e-08   1.5e-05     233     301 ..      55     129 ..      47     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3e-08
    TIGR01648 233 vkilyvrnlmletteeiieksfsefkpGavervkkirdya........fvhfedredavkamdelnGkeleGseiev 301
                  ++ lyv n+  +t    ++  f+++  G+v ++k i+d a         v +++ e+++ a+delnG +l+G +i v
  MMETSP1174-20130828|21235_1  55 IRRLYVGNMNWKTQMKKLRNHFEQV--GTVTQMKIIKDQAtsmskgwgIVSLSSAEETLTAIDELNGSKLDGRNIIV 129
                  6779*********************..***********8755444444799*********************99865 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   7.7e-08   3.9e-05     117     174 ..      65     122 ..      46     135 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 7.7e-08
    TIGR01659 117 qdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitv 174
                     + ++l   f  +g +   +i++d  t  s g+++v ++s  +++ ai++lng  +
  MMETSP1174-20130828|21235_1  65 WKTQMKKLRNHFEQVGTVTQMKIIKDQATSMSKGWGIVSLSSAEETLTAIDELNGSKL 122
                  3344556666677777777777777777777777777777777777777777777554 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   7.1e-08   3.6e-05     107     179 ..      56     130 ..      38     136 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7.1e-08
    TIGR01645 107 srv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                   r+ vG + +  +   lr+ f+  G +  +++  d +t   kg+  v     e +l a +++ng  l Grn+ v 
  MMETSP1174-20130828|21235_1  56 RRLyVGNMNWKTQMKKLRNHFEQVGTVTQMKIIKDQATSMSKGWGIVSlSSAEETLTAIDELNGSKLDGRNIIVR 130
                  46669*******************************************9999********************885 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05     0.021     304     368 ..      61     129 ..       6     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
    TIGR01649 304 snLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrv 368
                   n++  k + ++l n f + G v+++ki+k +     k+ ++v ++  +++  a++ L+++kl g+++ v
  MMETSP1174-20130828|21235_1  61 GNMN-WKTQMKKLRNHFEQVGTVTQMKIIKDQatsmsKGWGIVSLSSAEETLTAIDELNGSKLDGRNIIV 129
                  4544.466778899999************976333336789*************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 322.90
//
Query:       MMETSP1174-20130828|21238_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|21237_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.8   0.1      0.066    8.8   0.0    1.7  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   1.6e-05     0.066     600     740 ..     117     265 ..      96     272 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 1.6e-05
    TIGR02917 600 spellellgraqlaakdlkkavesfkkllelqpdsalallll.advyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkel........ekqkpkaalgfeleGdlalrqkdykaAiqaykkalkrapssqtvi 740
                    e +e lg +    +++   +++++k l+  p s+  +    a+  + + ++ +   +   +++ k       + la Ll + + +++Al +l +l         +q+ + a+   ++++l lr k++ +A+ a+k+ l+++ps + ++
  MMETSP1174-20130828|21237_1 117 DFESWEQLGHIWRHLGSVPRSLNCYRKTLATLPSSINQMSGGgAAGENKFDDVIEHVDERGHSVAAKVR-SSVHINLAGLLDQMNYVDDALVVLYTLlddqdvitTEQESNFAVAYMMVAQLELRAKRLDNAESALKATLQLSPSLKDAV 265
                  556677777777777777777777777777777777666554144445556666666666666666666.66677777777777777777766655433322222456667777788888888888888888888888888888765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.42
# Mc/sec: 1558.73
//
Query:       MMETSP1174-20130828|21241_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1174-20130828|21245_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|21246_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 333.64
//
Query:       MMETSP1174-20130828|21247_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-05   18.8   1.7     0.0041   11.8   0.1    2.1  2  TIGR01257 rim_protein: rim ABC transporter


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1   3.4e-05      0.14    1244    1280 ..       5      41 ..       2      57 .. 0.89
   2 !   11.8   0.1     1e-06    0.0041    1684    1732 ..     142     192 ..     109     210 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 3.4e-05
    TIGR01257 1244 aslfreleetladlglssfgisdtpleeiflkvteda 1280
                     +f  ++e  ++  ++ +g+s t lee+flkv  d 
  MMETSP1174-20130828|21247_1    5 GDFFTAFDEHYSEYQVAGYGVSVTDLEEVFLKVGGDH 41  
                   5678999999***********************9885 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1e-06
    TIGR01257 1684 icvifamsfvpa.sfvl.yliqervnkakhlqfisgvspttywltnflwdi 1732
                    ++++++ f+p+ sf++  ++ erv+k + +  + g    +yw+ nfl d 
  MMETSP1174-20130828|21247_1  142 TAILITVGFIPTtSFIVeKIVSERVTKLRNVLTVMGCDIRAYWIGNFLGDW 192 
                   4677889999963776626789**************************775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 799.48
//
Query:       MMETSP1174-20130828|21253_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|21258_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 911.92
//
Query:       MMETSP1174-20130828|21260_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 533.24
//
Query:       MMETSP1174-20130828|21262_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 189.58
//
Query:       MMETSP1174-20130828|21261_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-06   21.9   6.8    8.3e-06   21.6   4.7    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.1e-05   21.2   4.8    1.5e-05   20.7   3.3    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.26    8.0   6.6      0.073    9.8   1.0    2.0  2  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   4.7   6.1e-09   8.3e-06     704     915 ..      54     231 ..      22     267 .. 0.39

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.1e-09
    TIGR02168 704 elekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkel 915
                  +l+ + ++l+  ++ +++++  + ++ se  ++ +++++++ +++e+l++l+ e+ el+ + + +++ +++a+++l+ ++ e++e   +i   ++e+ ++ ++l +l +  + l ++a++       l++++a+++++l+el+ q+ +++++++  ++++e+ +++l ++++ ++e++ +k                            ++l
  MMETSP1174-20130828|21261_1  54 RLDVQAQQLRLVIDCMNADQSGSVKDPSEITADEHAAQQKQVEYKEKLSNLSYEIVELQGKATLTQSLVDDARSNLNDSKLEVAESVGKIFGCNAEIRSIMNDLGSLPSPSDPLAQDARD------TLNSQLAMARQTLNELTTQKGDESAQVKTQKSNLEKHRSALLKIHQSVNEKTLQK----------------------------QKL 231
                  333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333322222222222221......2222222222222222222222222222222222222222222222222222222............................222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   3.3   1.1e-08   1.5e-05     331     485 ..      79     234 ..      38     266 .. 0.53

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.1e-08
    TIGR02169 331 eidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee.laelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelekleke 485
                  + +++ ++ ++ ++++ e+k +  +l+ e+ el+ +    ++ +++   + + ++ e++e   k+   + e+ ++ ++l  l   +  l ++ +  l+ +l+ +++ ++el +++ +  +++k+++ +le+ +  l k+++++ +++ + +kl++ 
  MMETSP1174-20130828|21261_1  79 DPSEITADEHAAQQKQVEYKEKLSNLSYEIVELQGKATLTQSLVDDARSNLNDSKLEVAESVGKIFGCNAEIRSIMNDLGSLPSPSDPLAQDaRDTLNSQLAMARQTLNELTTQKGDESAQVKTQKSNLEKHRSALLKIHQSVNEKTLQKQKLDSS 234
                  233333333444444444555555555555555555555555555555555555555555555555555555555555555555554444430334555666666666666666666666666666666666666666666555555555554432 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.025        34      72     120 ..      84     132 ..      29     154 .. 0.65
   2 ?    9.8   1.0   5.3e-05     0.073      81     133 ..     171     223 ..     164     277 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.025
    TIGR00998  72 klDptdaelalekaeaklaalvrkvkqleikvkklqakveslkikleqa 120
                  + D+  a+++  + ++kl++l   + +l+ k    q+ v+ ++ +l+ +
  MMETSP1174-20130828|21261_1  84 TADEHAAQQKQVEYKEKLSNLSYEIVELQGKATLTQSLVDDARSNLNDS 132
                  3455555555555566666666666666555555555555555544443 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 5.3e-05
    TIGR00998  81 alekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqaeldleR 133
                  a ++++++la +++  ++l+ ++   +a+v+++k +le+ r++l++++   + 
  MMETSP1174-20130828|21261_1 171 ARDTLNSQLAMARQTLNELTTQKGDESAQVKTQKSNLEKHRSALLKIHQSVNE 223
                  6678999************************************9999854442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1009.54
//
Query:       MMETSP1174-20130828|21264_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|21265_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 589.55
//
Query:       MMETSP1174-20130828|21270_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1271.49
//
Query:       MMETSP1174-20130828|21273_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|21276_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1174-20130828|21277_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-28   95.6   0.2    5.8e-28   95.4   0.2    1.0  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain
    8.6e-25   84.9   0.2      1e-24   84.7   0.1    1.1  1  TIGR00340 zpr1_rel: zinc finger protein ZPR1 homolog


Domain annotation for each model (and alignments):
>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.2   2.8e-31   5.8e-28       3     160 ..      36     195 ..      34     198 .] 0.91

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 2.8e-31
    TIGR00310   3 CPsCgreleavvktvndiPyFgevletsliCekCgyrsadvvvleekepk..ryilkidaeadLnkrvvksesatiriPelgleiepGpasegfitnleGvlerveevlktalrlq.sedeekkkkaeellerlkevieG.kekltvileDPlgqslivsee 160
                  C  Cg+   + + t+ +iP+F+e+++ s  C+ Cg+++++v  ++e++ k  ry l + +++dL ++++ks++a + +P l+ ei      +g itn+eG+l  v   l+     +  ++ e  +k+ e++++l  +  G ++ +t+ + DP g+s+i s++
  MMETSP1174-20130828|21277_1  36 CMLCGESGVTRMMTT-KIPHFREIIVCSFECDTCGHKNQEVTFGGEIQAKgcRYELTVLNKSDLDRQMIKSDTARVLLPSLEFEIPAQ-SQKGGITNIEGILSTVLRNLQMYQAERmEQQPEVGAKVAEIIAKLALMSIGmDVPFTISVDDPSGNSYIESHH 195
                  899***********9.6********************************999*********************************776.89999*************999877665244557789*********9988884689**************9876 PP

>> TIGR00340  zpr1_rel: zinc finger protein ZPR1 homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.1   4.9e-28     1e-24       1     158 [.      36     196 ..      36     198 .] 0.88

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 4.9e-28
    TIGR00340   1 CPvCggrtlkavtyvediPyfGkvllstliCekCgyrsadvvvleekePk..ryeikieneedLktrvvrsksatiripelgikiepgpasegfisnieGvlerveeklktaldleeed..ekvkkveeilkkieevieGkkk.ltliieDefGkslieseka 158
                  C  Cg + ++ + ++++iP+f ++++ ++ C+ Cg+++++v+  +e + k  rye+ + n+ dL  ++++s +a + +p l+ +i p++  +g i+nieG+l  v  +l++    + e+  e   kv ei+ k+  +  G    +t+ + D++G+s ies+++
  MMETSP1174-20130828|21277_1  36 CMLCGESGVTRM-MTTKIPHFREIIVCSFECDTCGHKNQEVTFGGEIQAKgcRYELTVLNKSDLDRQMIKSDTARVLLPSLEFEI-PAQSQKGGITNIEGILSTVLRNLQMYQAERMEQqpEVGAKVAEIIAKLALMSIGMDVpFTISVDDPSGNSYIESHHV 196
                  677886555544.5789*************************98876554339********************************.89999******************9988766665568899*********9999997655***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 843.03
//
Query:       MMETSP1174-20130828|21278_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1174-20130828|21275_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-51  171.6   0.1    2.8e-51  171.4   0.0    1.0  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
    3.1e-05   20.9   0.1    4.2e-05   20.4   0.0    1.1  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
     0.0062   14.3   0.0     0.0082   13.9   0.0    1.3  1  TIGR00201 comF: comF family protein
  ------ inclusion threshold ------
      0.011   13.7   0.0      0.017   13.1   0.0    1.2  1  TIGR01090 apt: adenine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   2.8e-54   2.8e-51       1     166 [.       6     180 ..       6     181 .. 0.95

  Alignments for each domain:
  == domain 1    score: 171.4 bits;  conditional E-value: 2.8e-54
    TIGR01203   1 vliseeqikarikelakeieeeyagkkelvvvgvLkGsilFladliralk..........vpvkvdfiavsSYgnsvessgevkilkdldedikdkdvLlveDivdtgltlkellellkar.kpkslkivtlleKpsrrkvdvkvdfvgfeipdefvvGyglDyaelyRnlpyvgvl 166
                  v+i+++ i +r++++a+ i+++y g + +++++vLkG+  F+ dl+++l+          vp+++dfi+v+SY+++ es+g+vk+   + +  ++k+ LlveDi+dtg+t++ ll l++++   +slk++tlleK++ r+ ++k+d+ gf+ipd+fv+Gy +Dy+e +R++ +++v+
  MMETSP1174-20130828|21275_1   6 VMIPHGLIIDRVERMAQMIRSDYDGVT-VHLMCVLKGGSAFFEDLCQQLRaihrysdrpyVPFTFDFIRVKSYEGT-ESTGNVKVSGIDMSTLEGKNCLLVEDIIDTGTTMSRLLPLIQSQvAVASLKVATLLEKRTVRSCGFKADYCGFSIPDKFVIGYNIDYNEAFRDMGHLCVI 180
                  89***********************75.9*******************************9*************99.*******9996666667***********************98761569*************************************************997 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.1e-08   4.2e-05     198     237 ..      85     125 ..      71     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.1e-08
    TIGR01251 198 evevtnllg.dvegkdvvivDDiisTggTlvkaaelLkekG 237
                  +v+v  +++  +egk++++v Dii+Tg+T+ +   l++++ 
  MMETSP1174-20130828|21275_1  85 NVKVSGIDMsTLEGKNCLLVEDIIDTGTTMSRLLPLIQSQV 125
                  5555555541479*****************99887777765 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     8e-06    0.0082     147     188 ..      93     135 ..      47     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8e-06
    TIGR00201 147 vkevqgrkivlvDDvvttGatlaeiaklllk.lgaaevqvlsL 188
                  ++ ++g++  lv+D++ tG+t+     l+     +a+++v +L
  MMETSP1174-20130828|21275_1  93 MSTLEGKNCLLVEDIIDTGTTMSRLLPLIQSqVAVASLKVATL 135
                  45789******************99999987567777777666 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.017     108     147 ..      97     137 ..      74     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.6e-05
    TIGR01090 108 kgkrvlivDDllAtgGtveAaleLik.klgaevveaaflie 147
                  +gk++l+v+D++ tg t++  l Li+ ++    +++a l+e
  MMETSP1174-20130828|21275_1  97 EGKNCLLVEDIIDTGTTMSRLLPLIQsQVAVASLKVATLLE 137
                  799*********************98244455566777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 960.33
//
Query:       MMETSP1174-20130828|21279_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.4   0.1      0.022   12.0   0.1    1.1  1  TIGR00549 mevalon_kin: mevalonate kinase
      0.029   12.4   0.1      0.054   11.6   0.0    1.6  1  TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.1e-05     0.022     206     268 ..      41     114 ..      34     115 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
    TIGR00549 206 aigelvkeakaaledkd...........veqlgelmninqglLkslgvShpkleqlvelarkagalgaKlTGaG 268
                  + gel++++k+a++d+d           +++lg+++ +  +l ++l +S +++ q+    +  +    K+ G+G
  MMETSP1174-20130828|21279_1  41 ESGELANRLKKAMRDGDgvithadrhglAKELGDVLWYVSQLAHELDLSLDQIAQMNLDKLLDRQKRNKINGSG 114
                  6799****************************************************99999999999****999 PP

>> TIGR03188  histidine_hisI: phosphoribosyl-ATP diphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.6e-05     0.054      49      82 ..      62      95 ..      41      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.6e-05
    TIGR03188 49 nedkeelveEaaDllYhllVllaekgvsledvla 82
                 ++d++ l++E  D+l+++  l +e ++sl+++++
  MMETSP1174-20130828|21279_1 62 HADRHGLAKELGDVLWYVSQLAHELDLSLDQIAQ 95
                 567889*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1174-20130828|21285_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   28.4  16.7    1.6e-07   28.1  11.6    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1  11.6   3.9e-11   1.6e-07     312     498 ..      30     206 ..      11     210 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.9e-11
    TIGR00879 312 rlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfva.iflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyff 498
                   l+ g+ + a   lt +N+i     t+ e +G       ++s  +ga  va ++   +++ +r+    +++i+a+g ++ l ++g   + ++ +    +s++a+++++l+i + a+g+g+ ++  vs+  p +vR++g+++ ++  + ++f+  ++  +++++  g+ + ++++ + ++ +++++  f
  MMETSP1174-20130828|21285_1  30 DLIVGTGTIACFGLTAVNYICAQVGTVIEAVGGN---VTVGSNCFGAAQVAVSMATlLVTPSRIKPTNVFIISAVGECASLALIG---IAYALD----ISGLAVAGLVLYISFNAFGFGTFAFSFVSDRLPDQVRALGMSCGFVLFYGISFVYVQTSESLVDV-SGASIQYLLYSMVCLGTAFWAAAF 206
                  566777777777799*****************44...59****************989999************************...566665....789*************************************************************5.999999*******99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 737.79
//
Query:       MMETSP1174-20130828|21288_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|21289_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   14.5   0.0     0.0045   14.4   0.0    1.1  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.1e-06    0.0045      49      90 ..      29      72 ..      14      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-06
    TIGR01262 49 qelvPtLkidegevltqSlAiieyLeetyp..epaLlpkdpakr 90
                  +++P+Lk ++g+ ltqS A+  yL +++    ++L p++p+  
  MMETSP1174-20130828|21289_1 29 WGQIPVLKLQDGRELTQSKAMSRYLAKEVSlgGSKLYPENPWVA 72
                 579**********************9876522556888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 522.68
//
Query:       MMETSP1174-20130828|21290_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 202.70
//
Query:       MMETSP1174-20130828|21293_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|21295_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-26   88.9   0.0    7.7e-26   88.6   0.0    1.1  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   1.9e-29   7.7e-26      32     156 ..       5     143 ..       1     145 [. 0.82

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1.9e-29
    TIGR00093  32 aavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegs.vtdedlealrkGvkledektkpaklklikepelktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvsl..................egLeeGew 156
                  a+ G  D++++Glll+++dg+l++rl++p++ ve++Y+++v+g     e +++l++Gv+ +d+   +  +        + ++r+++teG++r vrR+++++gl+v +L+Rvr+g+v+l                   +L+ Gew
  MMETSP1174-20130828|21295_1   5 APGGAFDMNTSGLLLFSSDGQLTQRLLNPRNGVEREYVAEVDGDaLMPELSQKLAAGVETSDGSFPARLVDQK-----EGEVRLIVTEGKYRMVRRILNNIGLPVTKLHRVRYGEVKLravlpesmhtndlstdnaIALAVGEW 143
                  677999************************************8625789999*******99997765544443.....2469************************************76666666665555443333555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 802.09
//
Query:       MMETSP1174-20130828|21299_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 232.30
//
Query:       MMETSP1174-20130828|21296_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-39  134.3   2.2    1.7e-39  133.8   1.5    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    6.9e-34  115.1   5.1    1.3e-32  110.9   3.5    2.0  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.7e-33  114.1   2.7    2.2e-33  113.8   1.9    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.7e-29   99.4   2.6    7.1e-29   98.9   1.8    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.1e-28   97.8   6.1      6e-28   95.4   4.2    1.8  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.1e-27   94.9   4.7    1.3e-27   94.6   3.3    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.2e-27   94.8   8.8    1.5e-26   91.2   6.1    2.0  1  TIGR02415 23BDH: acetoin reductases
    1.4e-25   88.0   4.7    4.5e-25   86.4   3.3    1.7  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.9e-25   86.7   3.2    4.1e-24   82.9   2.2    2.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    3.4e-22   76.8   2.5    4.6e-22   76.4   1.7    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.7e-21   74.5   6.5    5.3e-21   72.9   4.5    1.6  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    0.00039   17.7   0.1    0.00056   17.2   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
      0.001   16.5   0.1     0.0018   15.7   0.1    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0059   12.4   0.1     0.0075   12.1   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   1.5   5.8e-42   1.7e-39       1     238 [.      15     262 ..      15     263 .. 0.91

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 5.8e-42
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke.agvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGit.......rDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklse.kvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  a+vtGasrg+G++i++ +a ega+vv+++ ++e+ka+++++e+++  g++a+av  dv++++++ +lv+e+++++g ++dilvnnA  +         + +  ++  ++d+ ++  Lkg  n ++a l    ++++G++i i+    +   +    Y+a+Ka liglt+ la El+  +i+vn va G++et   ++l+  +v   +++  pl+++ +++  a+a+++    +++ +tGq l+vdGGl
  MMETSP1174-20130828|21296_1  15 AIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKTVVDEINNaPGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNALASyqfnpgsAQASIETVEWAHFDAQLQGSLKGSVNAVQALLPLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLTTpEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGL 262
                  79*****************************************984699************************99759*******976522221113344555666788999*******************************************************************************9888888652778888899*************************************8 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   3.5   4.3e-35   1.3e-32       2     254 ..      13     264 ..      12     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 4.3e-35
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaa.akeleeaggevlalkadvtkeeeiadlieavaaefg.sldiLvnnA..Giqh.....vapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwta 254
                  +va+vtGa+ G+g++i++ +a +Ga+vvvn ++ e++a+++ ++  ++ gg+++a+  dvtk++++  l+++++a+fg s+diLvnnA    q+      a ie  + ++f++ ++ +l++++ +++a lp  k+q++G++i i+    +    +   Y aaK +l+Glt+ lA E   +gi++n ++ g  +t          + +  +++ +v    + + +p ++ +tv   ae+ ++  + a+ ++tGq+ls+dgG t+
  MMETSP1174-20130828|21296_1  13 RVAIVTGASRGVGAEISRLFAGEGASVVVNYFKnEAKAKTVvDEINNAPGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNAlaSYQFnpgsaQASIETVEWAHFDAQLQGSLKGSVNAVQALLPLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLET----------TDASSLTTPEVFG-FVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLTM 264
                  89******************************9444444441455566799*************************96379******833456422222589*******************************************9999999999999***************************988887777..........4566788888886.55799*************************************986 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   1.9   7.4e-36   2.2e-33       1     242 []      13     264 ..      13     264 .. 0.90

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 7.4e-36
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqe.kevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGit.......rdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkav.redvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGlym 242
                  rva+vtG+++G+G++i++ +a +G  vv n+  ne++ak + +e +++ g   + v +dv++ ++  a va+ +a+  G+vd+lvnna            a ++ ++ +++++ ++  l++  n  + ++   +e+++G++i i +       +   +y+aaka liG+t+ la e   +g+ vn +a G ++t   +++   +v   + ++ P+++ ++    a+a++++ + ++  vtG++lsv+GGl m
  MMETSP1174-20130828|21296_1  13 RVAIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKTVVDEiNNAPGGRAIAVYGDVTKKDDMVALVAEAKAAFgGSVDILVNNALASyqfnpgsAQASIETVEWAHFDAQLQGSLKGSVNAVQALLPLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLtTPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLTM 264
                  89*********************************999998877367889999999******************998358*******976511111113566777888888999*******************************998999999**************************************987666651679*********************************************987 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   1.8   2.4e-31   7.1e-29       2     244 ..       9     261 ..       8     264 .. 0.83

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 2.4e-31
    TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgiselsetq...ekv.ealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirr....edavefsekdw...ddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGG 244
                  +l G+va+vtGa++G+G  i+  +a  Ga +v    ++  +++   +++ +a G ++ ++  d+++++++ alv+ea +++g  +dilvnna    +    +    +   +w   d+ l+  lk      qa+   l k+ + gk+i i + l ++  +    yta+k +++Glt+ la+e+  +gi+vn +a G let ++ +l + e     + +  P  +  +   +a+a v++ ++asd v+G+ l+vdGG
  MMETSP1174-20130828|21296_1   9 QLSGRVAIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKtvvDEInNAPGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNALASYQfnpgSAQASIETVEWahfDAQLQGSLKGSVNAVQALL-PLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLTTPEVF-GFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGG 261
                  589****************************987655544444001444245699**********************9999769*******9765442221223344445561115566666776666666654.4567778***************************************************************987765.678999************************************9 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   4.2     2e-30     6e-28     409     671 ..       7     263 ..       3     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 95.4 bits;  conditional E-value: 2e-30
    TIGR02632 409 ekelarrvalvtGgasGiGrevarrlvdeGahvvlad.ldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGG.vdivvnnaGiavs..kpleete..leeWdlnldilatGyflvareaar....llrkqglggnlvfiasknavva.kknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGva 671
                  + +l++rva+vtG++ G+G e++r +++eGa vv+   +++++a++v +e+++  G ++a+a+  dvt+++ + a +ae+  a+GG vdi+vnna  +    + + + +  + eW+ ++d   +G+   + +a++    l+++q+ g ++++i++ n v+        y+aaka+ + l r la el++ girvn va        g+       +   a+ +++ ++  f ++ + l++  +    aea  ++ +  ++  tG+ ++vd+G++
  MMETSP1174-20130828|21296_1   7 PGQLSGRVAIVTGASRGVGAEISRLFAGEGASVVVNYfKNEAKAKTVVDEINNAPG-GRAIAVYGDVTKKDDMVALVAEAKAAFGGsVDILVNNALASYQfnPGSAQASieTVEWA-HFDAQLQGSLKGSVNAVQallpLFKEQQYG-KVIMIGT-NLVYNpVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAG-------GLL------ETTDASSLTTPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLT 263
                  6689*****************************99862677788899999996655.99*************************9989******9665431133333331245675.567777777766665554222278888876.5667765.555541456678***************************9863.......222......33445667888999*******************************************85 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   3.3   4.5e-30   1.3e-27       2     250 .]      11     264 ..      10     264 .. 0.87

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 4.5e-30
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaea.aekvaaairek.ggkaeavavditdrasvdaavaaaeealg.pvdvlvnnagwd.vlkp...flktekaewerl...iainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsggltm 250
                   ++vaivtg + g+g+ i r fa ega v v  ++ ea a++v ++i+++ gg+a av  d+t+++ + a va a+ a+g  vd+lvnna    +++p     + e  ew ++   +   l+g++    a+l+ + e++ g+++ i ++           y+a k  l+ +++ la el   gi vn+v  g  +t+      + +  +  +    ++  pl +      +a a +++++  +  +tgq lsv ggltm
  MMETSP1174-20130828|21296_1  11 SGRVAIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAkAKTVVDEINNApGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNALASyQFNPgsaQASIETVEWAHFdaqLQGSLKGSVNAVQALLPLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETT-----DASSLTTPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLTM 264
                  6799***************************99988875899*****876599***********************9996379******9543145542224566777776651115568999999****************************************************************9976665.....3444444557788899****************************************9 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   6.1     5e-29   1.5e-26       1     252 [.      13     263 ..      13     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 5e-29
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln.eetaketakelkek.gtkavavkldvsdkseveeaveqaveklG.eldvlvnnaGva.......lvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlv 252
                  +va+vtGa++G+G +i++ +a +G +v+v  ++ e++ak ++ e++++ g++a+av  dv++k+++ ++v +a++ +G ++d+lvnna  +       +  +i++++  +++ + +  +kg +  +qa    fk+++  Gk+i   +    + + +   y+++k ++ glt+  a eL ++gi vn  a G+ +t+  +++ + +  + g         +++   l ++++    ae   ++ + +sd +tGqs+ vdGGl 
  MMETSP1174-20130828|21296_1  13 RVAIVTGASRGVGAEISRLFAGEGASVVVNYFKnEAKAKTVVDEINNApGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNALASyqfnpgsAQASIETVEWAHFDAQLQGSLKGSVNAVQALLPLFKEQQ-YGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLTTPE--VFG--------FVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLT 263
                  79****************************99868899999****976599**************************7369******96542111111456899999999999999999999999***999999876.699999998888999999999**********************************998766665433..333........3333344444555666899999********************96 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   3.3   1.5e-27   4.5e-25       1     264 [.      10     262 ..      10     263 .. 0.82

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 1.5e-27
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvlsy.....grafelseeqW...dtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                  l G+va++tGa+rG G   +  +a eGa +++ +  ++        a ++  +de   + +a G +++a ++dv k +++ a v+e+ + fG  +d++v+na  +sy     ++   ++  +W   d  l+  lkG  ++v+a +P + e++  G +i++++    + + +   y+aak  l+glt+ la el++ girvn +    ++t+  +        ++++e+     + +p++   ++ + a++ +++ +  s  +tG+ l vd G 
  MMETSP1174-20130828|21296_1  10 LSGRVAIVTGASRGVGAEISRLFAGEGASVVV-NYFKNE-------AKAKTVVDE---INNAPGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNAL-ASYqfnpgSAQASIETVEWahfDAQLQGSLKGSVNAVQALLPLFKEQQ-YGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDAS-------SLTTPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGL 262
                  78**************9999999*****9874.333333.......222222333...34678***************************9648*******94.454233322445666666633367899999************999988.788899999888899999999****************************998888876555.......567777777778999***9******************************996 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   2.2   1.4e-26   4.1e-24       3     264 ..      14     264 ..      12     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.4e-26
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfraf.Grcdvlvnnasafyp.tpllrgdaeegaaekkslevqva.elfGs.naiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevkeey...rrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGlsl 264
                  +a+vtGa++ +G  i+  +  eG  vv+ y + +++a+++++e+n++  + a+ v +d+++   +++     +  +  af G  d+lvnna a y   p   + + e + e    ++q    l Gs na+    l+  f ++q g           ++ +   ++  p++++  yt ak +l Gltr  a el + +irvn va Gl    da +  + e +    +  pl +  ++    a++ +++ +  ++ +tG  + vdGGl++
  MMETSP1174-20130828|21296_1  14 VAIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKTVVDEINNAPGGRAIAVYGDVTKKDDMVAL----VAEAKAAFgGSVDILVNNALASYQfNPGSAQASIE-TVEWAHFDAQLQgSLKGSvNAVQA--LLPLFKEQQYG----------KVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLTTPEVFgfvAQGTPLRK-TTTVTAFAEACVYFGAAASDSVTGQSLSVDGGLTM 264
                  8***********************************************************99887764....555555662689*******8877614444444444.566667777765145554344443..44455555522..........244455678899****************************************99999999998887732245678865.566778999***********************986 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   1.7   1.6e-24   4.6e-22       2     238 ..      16     262 ..      15     263 .. 0.83

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 1.6e-24
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaair.aqggnarllkfdvadrvavrevleadiaehgayygvvlnagiar.....daafpalseedw...davietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaev..ekdlkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                  +vtgasrg+g  i+  +a +g  + v y +++a+a+++v++i+ a gg a  +  dv+++  + +++ +  a+ g    +++n  +a       +a  ++   +w   da ++ +l g  n ++ l +p+ + ++ g++i + +           +y+aaka lig t+ la el    i vn +a gl++t   ++   ++ +    +  p+++       a  + ++ +  +  vt q +sv+gg+
  MMETSP1174-20130828|21296_1  16 IVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKTVVDEINnAPGGRAIAVYGDVTKKDDMVALVAEAKAAFGGSVDILVNNALASyqfnpGSAQASIETVEWahfDAQLQGSLKGSVNAVQAL-LPLFKEQQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSGIRVNLVAGGLLETTDASSLttPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAASDSVTGQSLSVDGGL 262
                  79****************************************63789999999******9998877765556666666666555554411111344444555555444999************975.8**************9987777788999************************************98766541144455666789*******************9999************97 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   4.5   1.8e-23   5.3e-21       2     255 ..       9     262 ..       8     266 .. 0.82

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 1.8e-23
    TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavl.....dksaagleeleaahgdkvvgvegdvrllddhkeavarcveafg.kldtlipna.giwdystalvdipddrid.eafdevfeinvkgyllavkaalpalva.srgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapggls.tdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydggl 255
                  +l+++v++vtg + g+g  +   f  ega v v       k++  ++e+++a g++ ++v gdv   dd    va+  +afg  +d+l++na   ++++    +   + ++ + fd   +  +kg + av+a lp + +   g vi+  +n  + p      ytaak +++gl ++la el+p  +rvn va g l  td            s+++  +  ++ +  p+ + +++  ++ a v+f + + +  +tg  l  dggl
  MMETSP1174-20130828|21296_1   9 QLSGRVAIVTGASRGVGAEISRLFAGEGASVVVNyfkneAKAKTVVDEINNAPGGRAIAVYGDVTKKDDMVALVAEAKAAFGgSVDILVNNAlASYQFNPGSAQASIETVEwAHFDAQLQGSLKGSVNAVQALLPLFKEqQYGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGPSgIRVNLVAGGLLEtTDAS----------SLTTPEVFGFVAQGTPLRKTTTVTAFAEACVYFGAAA-SDSVTGQSLSVDGGL 262
                  6899***************************9953332245666799**********************************6379****99845688888888888888883569********************98751568899999999999999*************************76******98877644433..........3333334455566667778888888888888885443.234688888888887 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06   0.00056       2     198 ..      14     206 ..      13     216 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsn....vtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDt 198
                  +++vtGasrG+G e+++ +a    +  sv+v + +n+   k   +ei+    ++ +  +  d+ ++    d++  + e     + +  +l+nna + ++   +  + s  +    ++d+     +   v     ll  +ke q     v+ + +    +p+ ++  Y a+ka    + + La e     ++v   a G l+t
  MMETSP1174-20130828|21296_1  14 VAIVTGASRGVGAEISRLFAG---EGASVVVNYFKNEAKAKTVVDEINNAPGGRAIAVY-GDVTKKD---DMVALVAEAKAAFGGSVDILVNNALASYQFNPGSAQASIETVEWAHFDAQlqgsLKGSVNAVQALLPLFKEQQ--YGKVIMIGTNLVYNPVVTYYDYTAAKASLIGLTRNLASELGpSGIRVNLVAGGLLET 206
                  79****************999...77789999999************985666666655.4665554...6677777777777778888888888888876666544433333334444400004444445555555666544..223445566666788888888888888877778888877776667776666666665 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.2e-06    0.0018       5      90 ..      14     101 ..      11     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.2e-06
    TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsyti.lkldlasldsvrkfveqfres.grsldalvcnaa 90 
                   +i+tgas g+g + ++ ++ +g   vv   ++  ka+ + +++  +++  +i +  d+++ d +  +v++ +++ g s+d+lv na 
  MMETSP1174-20130828|21296_1  14 VAIVTGASRGVGAEISRLFAGEGASVVVNYFKNEAKAKTVVDEINNAPGGRAIaVYGDVTKKDDMVALVAEAKAAfGGSVDILVNNAL 101
                  579********************9999999**************9999888873567******999999999864399******9994 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.5e-05    0.0075     725     792 ..      31      99 ..      26     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
    TIGR02068 725 lfnlggatvlvDyahnpealkavveaveklkarrrigvvggpgDrrDe.dlvklgkllgeafDqiilke 792
                  lf  +ga v+v+y  n +  k vv+ +++ + +r i+v+g  + + D  +lv  +k + ++  +i++ +
  MMETSP1174-20130828|21296_1  31 LFAGEGASVVVNYFKNEAKAKTVVDEINNAPGGRAIAVYGDVTKKDDMvALVAEAKAAFGGSVDILVNN 99 
                  89999**********************************988776663345555555544444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.68
# Mc/sec: 619.18
//
Query:       MMETSP1174-20130828|21300_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|21304_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|21306_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|21308_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|21307_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1221.96
//
Query:       MMETSP1174-20130828|21309_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-08   31.0   4.1    5.6e-08   30.9   2.9    1.1  1  TIGR00880 2_A_01_02: multidrug resistance protein
    6.1e-05   19.7   2.6    6.4e-05   19.7   1.8    1.0  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    0.00022   18.1   2.2    0.00023   18.1   1.5    1.0  1  TIGR00893 2A0114: D-galactonate transporter
     0.0008   16.4   2.3    0.00086   16.3   1.6    1.1  1  TIGR00886 2A0108: nitrite transporter
     0.0016   15.2   4.1     0.0018   15.1   2.8    1.0  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
     0.0019   15.2   0.9     0.0021   15.1   0.6    1.0  1  TIGR02332 HpaX: 4-hydroxyphenylacetate permease
     0.0022   14.4   1.1     0.0023   14.3   0.8    1.0  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
      0.003   14.8   2.2     0.0034   14.6   1.5    1.0  1  TIGR00900 2A0121: H+ Antiporter protein
     0.0081   12.6   3.5     0.0087   12.5   2.4    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   2.9   1.2e-10   5.6e-08      45     115 ..      11      81 ..       1      94 [. 0.84

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.2e-10
    TIGR00880  45 fals.snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalg 115
                  +als  ++++l  +ri++G+++a a + + a+ia+++++e+r++ l++   ++ +g+++Gp+l ++l++  +
  MMETSP1174-20130828|21309_1  11 AALSiGQLWLLPASRIVVGIFGASAAPCT-AYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTALDT 81 
                  3333578999*************999998.***********************************9997744 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.8   1.4e-07   6.4e-05      93     152 ..      21      79 ..       3      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
    TIGR00711  93 liifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiiea 152
                  l   R++ g++g+   p  ++ +++ +p+ekr+++la+ g   l++  +GP L G+++ +
  MMETSP1174-20130828|21309_1  21 LPASRIVVGIFGASAAPC-TAYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTAL 79 
                  34679******9999996.689***********************************976 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.5     5e-07   0.00023      75     143 ..      10      78 ..       1      95 [. 0.81

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5e-07
    TIGR00893  75 lqafat.alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilv 143
                  + a+   +l+ l + R+++G++ a + P+ + ++a  FPa++ra   ++    + +g +ig++l g++++
  MMETSP1174-20130828|21309_1  10 AAALSIgQLWLLPASRIVVGIFGASAAPCTA-YIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTA 78 
                  334322488999999**************86.66778****************************98654 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.6   1.9e-06   0.00086      87     134 ..      14      61 ..       3      86 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.9e-06
    TIGR00886  87 avssfsellllrlliGiaGasFvislamisefFpkkevGtAlglaaGl 134
                  + ++++ l + r+++Gi Gas +++ a i++ Fp ++    l++++G+
  MMETSP1174-20130828|21309_1  14 SIGQLWLLPASRIVVGIFGASAAPCTAYIARVFPAEKRAQGLAVQGGI 61 
                  3348899999************************99888888888875 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.8   3.8e-06    0.0018     335     397 ..      15      76 ..       1      77 [. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.8e-06
    TIGR00895 335 lssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvl 397
                  + +  ll    +++G+f + a +  +a+ a+++p++ Ra g+++  gi  +g +igp+l g+l
  MMETSP1174-20130828|21309_1  15 IGQLWLLPASRIVVGIFGASA-APCTAYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFL 76 
                  333334444568999997655.67899**********************************98 PP

>> TIGR02332  HpaX: 4-hydroxyphenylacetate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   4.6e-06    0.0021     102     170 ..      24      91 ..       2      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.6e-06
    TIGR02332 102 lrilvgiaeagflpgillyltfwfpayfraranalfmvampvttalglilsgyilaldgllalkgwqwl 170
                   ri+vgi  a   p    y++  fpa  ra+  a+    + + +++g  l g++ ald  ++l g++ +
  MMETSP1174-20130828|21309_1  24 SRIVVGIFGASAAPC-TAYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTALDTTFTLFGYDVI 91 
                  49*********9997.57*****************9999999*********************999865 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.8   5.1e-06    0.0023     118     194 ..       4      80 ..       1      93 [. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.1e-06
    TIGR00894 118 vlslliPiaaavgval.vivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd 194
                  + +l+   a  +g+ + + + R++ G+  + ++p++   +a+ +P + R++ +++  + +++G li   + G++  +d
  MMETSP1174-20130828|21309_1   4 FGNLVYAAALSIGQLWlLPASRIVVGIFGASAAPCTAY-IARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTALD 80 
                  556666667788999956689**************975.69*************99999**************99886 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.5   7.6e-06    0.0034      85     165 ..      12      91 ..       2      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.6e-06
    TIGR00900  85 allg.leiwmvlvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaailvdav 165
                  a l   ++w++ +  ++ +i+ a  +p  +a++ ++ p e+ +++ ++ + ++ +  ++gP++ g+l a+  + +++  d++
  MMETSP1174-20130828|21309_1  12 A-LSiGQLWLLPASRIVVGIFGASAAPC-TAYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQGFLTALDTTFTLFGYDVI 91 
                  3.22357888888888888888877775.69*************************************99888888888876 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.4   1.9e-05    0.0087     142     211 ..       2      73 ..       1      94 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.9e-05
    TIGR00879 142 gailsllaatals...vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg 211
                  g++++l++a als   +++l ++R+++Gi+ G ++a +  Yi+ + p++ R++   ++    ++Gil++  ++
  MMETSP1174-20130828|21309_1   2 GIFGNLVYAAALSigqLWLLPASRIVVGIF-GASAAPCTAYIARVFPAEKRAQGLAVQGGIFLIGILIGPALQ 73 
                  66777777888878889************5.9**************************99999**99987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|21312_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|21315_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1174-20130828|21318_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1575.07
//
Query:       MMETSP1174-20130828|21322_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|21321_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 841.43
//
Query:       MMETSP1174-20130828|21324_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1174-20130828|21327_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|21326_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|21328_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 740.61
//
Query:       MMETSP1174-20130828|21332_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|21333_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 285.38
//
Query:       MMETSP1174-20130828|21334_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|21337_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 203.33
//
Query:       MMETSP1174-20130828|21336_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   12.9   0.6      0.004   12.8   0.4    1.0  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular
  ------ inclusion threshold ------
      0.051   11.9   1.7       0.11   10.8   1.2    1.6  1  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
       0.42    9.2   5.1       0.74    8.4   3.6    1.4  1  TIGR03382 GC_trans_RRR: Myxococcales GC_trans_RRR domain
          4    2.7   9.6        4.1    2.7   6.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.4   3.9e-06     0.004     994    1110 ..      26     148 ..      19     149 .] 0.52

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-06
    TIGR02102  994 ldpltavvvkvgekeasektapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskkeneeveksskekkee....kldkeaklpktaekssklllla...giilllllatlllllkr 1110
                   ++++  +vv+   + + e+t+++   e+ +d++  e k ++++ ++  ++++ +s++  ++ +e++++ +++++   +    k+++ + l + +  +s+++++a   gi++++ +a+l++l +r
  MMETSP1174-20130828|21336_1   26 VNAFCGTVVQALLTTNEEETPEPVA-EQAEDEPVAEVKGNENEAQERGSQRGLQSTEEGQKGDEESKTGDNDDDVAADgdplKKEEADTLTRPGAMQSRTVSMAaatGIAAVVAMALLVFLRRR 148 
                   5667777777765444444444444.44444555554444445555555555555555555555533332222222111111334456788878777777665422278888888877776554 PP

>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.2   0.00011      0.11      11      31 ..     129     148 ..     122     149 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR03901  11 gagpgalgLlgLgllalrRRR 31 
                  +a+ g ++ ++ +ll  +RRR
  MMETSP1174-20130828|21336_1 129 AAT-GIAAVVAMALLVFLRRR 148
                  223.99999***********9 PP

>> TIGR03382  GC_trans_RRR: Myxococcales GC_trans_RRR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.6   0.00072      0.74       7      25 ..     130     148 ..     126     149 .] 0.58

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00072
    TIGR03382   7 GaggllalalLalaaLlRR 25 
                   +g+++++a+++l+ L+RR
  MMETSP1174-20130828|21336_1 130 ATGIAAVVAMALLVFLRRR 148
                  4555555555566666666 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.7     0.004       4.1     737     803 ..      41     104 ..      11     129 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.004
    TIGR00927 737 dqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerk 803
                  ++ee p    ++ae e  +e +g+e+ea+ e  ++++ +s +e ++++e+ + +++++  ++ a++ 
  MMETSP1174-20130828|21336_1  41 NEEETPEPVAEQAEDEPVAEVKGNENEAQ-ERGSQRGLQSTEEGQKGDEESKTGDNDD--DVAADGD 104
                  33334444444444444444444444444.2222222222222222222222222222..2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 491.66
//
Query:       MMETSP1174-20130828|21339_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 681.23
//
Query:       MMETSP1174-20130828|21335_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 773.52
//
Query:       MMETSP1174-20130828|21342_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 677.06
//
Query:       MMETSP1174-20130828|21343_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 258.48
//
Query:       MMETSP1174-20130828|21345_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.2   2.3     0.0028   14.9   1.6    1.2  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.6   6.9e-07    0.0028      44     124 ..      24     104 ..       1     109 [. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.9e-07
    TIGR00950  44 krllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnls 124
                    ++  + ++a ++++      + v  l+ +++al+l+l P+++ ++s l +   v+ ++++ a l   G +++l++++++
  MMETSP1174-20130828|21345_1  24 AFAWGSVAFSASFNLLHGWADAVGVTVLPPSTVALFLILEPVFTDVISYLTGGGSVSALEIICAGLTCTGLIVVLYYTKTR 104
                  45555555566555666666677888999***********************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.81
# Mc/sec: 211.83
//
Query:       MMETSP1174-20130828|21347_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.41
# Mc/sec: 315.49
//
Query:       MMETSP1174-20130828|21348_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.3   0.3      0.043   11.2   0.2    1.0  1  TIGR01310 L7: 60S ribosomal protein L7


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   1.1e-05     0.043      19      93 ..       3      77 ..       1      87 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
    TIGR01310 19 akkkklkkkenkkkkkkkfkRaekfvkeyekaerekirlkreakkkgklyveaekklvFviRikginkldpkvrk 93
                 +++++l+ k ++++ ++ ++R++      e+ e + +r+ re + +++ + +a++kl  ++R+++   l+ ++ +
  MMETSP1174-20130828|21348_1  3 KQQAHLEDKLKEQEAAEALQRQAMVKAHAEALESNLVRIARENQDAKNEACKARRKLRSLLRLQRWSPLKLTTEE 77
                 5677777788888888999***99999999*********************************999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.63
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|21349_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 255.98
//
Query:       MMETSP1174-20130828|21350_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-14   51.4   0.7    4.1e-07   26.9   0.0    3.0  3  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    1.6e-10   37.7   0.1    7.2e-05   19.1   0.1    2.1  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    1.6e-08   31.5   0.4    0.00022   17.9   0.1    3.0  3  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    1.8e-08   31.2   0.0     0.0023   14.3   0.0    2.5  3  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    7.7e-06   22.4   0.0      0.057    9.7   0.0    3.0  3  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
     0.0002   17.9   0.0      0.025   10.9   0.0    2.1  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit


Domain annotation for each model (and alignments):
>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     6e-10   4.1e-07     230     368 ..      73     212 ..      17     218 .. 0.76
   2 !   17.4   0.0   4.5e-07   0.00031     365     442 ..     243     325 ..     235     331 .. 0.86
   3 !    3.9   0.1    0.0057       3.9     487     514 ..     344     371 ..     336     377 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 6e-10
    TIGR02339 230 enakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslke.ieesdLGeaelveerkvged.klvfvegaknakavt 368
                  +   +al d +l+   +++  + +    ++  +   +e ++l    ++ +d+ + +v +q+ i       la++ ilav+r     i+ ++r+ Ga ivs+    + e+ LG  + +e r ++++ +++fve a+ a av 
  MMETSP1174-20130828|21350_1  73 TAFSVALFDCSLQAPPSDFRIESSAVMDQRALSAKSAEIQMLDLLLKQFTDSRVALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDPTAvLAENALGAIKHIEVRYLEDHrEYLFVEAAS-AEAVE 212
                  344688999999888888888776655555556667888999999*******************************************************9766268899***********99872577887665.77775 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.5e-07
    TIGR02339 365 kavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreql.....aveafadaleei 442
                     t++lr  +++ v+el  +++  + v+ + l++++ +aG+G  e+ +a  l++   ++   e +     av  fa+ le++
  MMETSP1174-20130828|21350_1 243 TMATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRMGSLAEEEVVtpvikAVGSFAKCLESV 325
                  55799*************************************************99888887776434344788899999876 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0057
    TIGR02339 487 elgvieplkvkeqaiksateaatlilri 514
                   ++v+++    ++a++ a+ea++++lr+
  MMETSP1174-20130828|21350_1 344 PARVLDSYSASTRAVEMAVEASIAVLRM 371
                  579***********************97 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.1e-07   0.00042     265     366 ..     108     210 ..      84     217 .. 0.90
   2 !   19.1   0.1   1.1e-07   7.2e-05     364     442 ..     242     325 ..     235     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.1e-07
    TIGR02345 265 daewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsa.vsdleadvlGkcalfeekqiGserynlftggekaka 366
                  +ae +++   l++ ++s   +v s++ i  +  + +a r+i++  r+s   +k v++ +Ga i+s  +  l ++ lG+ +  e + +  +r  lf ++ +a+a
  MMETSP1174-20130828|21350_1 108 SAEIQMLDLLLKQFTDSRVALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDpTAVLAENALGAIKHIEVRYLEDHREYLFVEAASAEA 210
                  7999999999****************************************************998637788999*****************999998877665 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.1e-07
    TIGR02345 364 akactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqql..iiea...vakalevi 442
                  a  +tlilr +++q +ee   +++  +m++   lk+   +aG G  e  ++++l+++   +++ + +  +i+a   +ak le +
  MMETSP1174-20130828|21350_1 242 ATMATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRMGSLAEEEVVtpVIKAvgsFAKCLESV 325
                  6789**************************************************988666655544323777622246667665 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00066      0.45     226     334 ..      73     181 ..      46     212 .. 0.80
   2 !   17.9   0.1   3.3e-07   0.00022     365     441 ..     241     322 ..     236     329 .. 0.85
   3 !    3.5   0.0    0.0073         5     489     525 ..     337     373 ..     324     380 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00066
    TIGR02340 226 kkakialldfnlqkaklklgvqi.vvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGee 334
                  ++  +al+d +lq    ++ ++   v d + l   ++ e++++   +k+  ++   +v   + i     + l   +++av+r++ + +k + +++Ga +vs  + +  e+
  MMETSP1174-20130828|21350_1  73 TAFSVALFDCSLQAPPSDFRIESsAVMDQRALS-AKSAEIQMLDLLLKQFTDSRVALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDPTAVLAEN 181
                  455678888888888888777541567777775.588899999999999999999999999999999********************************98655554444 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 3.3e-07
    TIGR02340 365 kkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreql.....aiaefaeal 441
                  ++++a++ilr + ++ ++e+  ++   ++v++  l   + +aG+G+ ea+++ yl++   +l   e +     a+  fa++l
  MMETSP1174-20130828|21350_1 241 RATMATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRMGSLAEEEVVtpvikAVGSFAKCL 322
                  5789****************************************************99999988876533333555666655 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0073
    TIGR02340 489 gkirdnveaGvlePavskvkslkfateaaitilridd 525
                     rd+  a vl+   +  + +++a+ea+i++lr+  
  MMETSP1174-20130828|21350_1 337 WADRDTEPARVLDSYSASTRAVEMAVEASIAVLRMGG 373
                  55677888999999999*****************865 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.1e-06    0.0028     197     354 ..      33     196 ..      16     216 .. 0.77
   2 !   14.3   0.0   3.3e-06    0.0023     369     440 ..     245     318 ..     237     334 .. 0.81
   3 ?   -2.2   0.0      0.33   2.3e+02     489     517 ..     344     372 ..     340     378 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.1e-06
    TIGR02344 197 kvekipGGeiedsavlkG.vllnkdvthp.....kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrvee.lkesdvGtgaGlfevkkiGd 354
                  ++  i G  +++s vl+  +l++   + p     + r+      + l+dc+l+   ++ + +   + ++   +    e ++++ l ++  +++  lv +++ +    +  l+ ++i a++r+     + ++r+sGa iv+ +   l e+ +G     +ev+ + d
  MMETSP1174-20130828|21350_1  33 RLHCIAGRPVDQSEVLQDaILIDLPYVLPpltlnQQRKDSTAFSVALFDCSLQAPPSDFRIESSAVMDQRALSAKSAEIQMLDLLLKQFTDSRVALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDPTAvLAENALGA-IKHIEVRYLED 196
                  6666777777777777641445544333312221566667777899******99999888888888888888888999999**********************************************************99876145666664.44566666665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 3.3e-06
    TIGR02344 369 ctillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakkl..egveqlpyeavada 440
                   t++lr +s + ++e+   +q  + v  n l ep  ++G G+ e +v+++lk +  +l  e+v   +++av++ 
  MMETSP1174-20130828|21350_1 245 ATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRMGSLaeEEVVTPVIKAVGSF 318
                  699************************************************99876651145555566666554 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.33
    TIGR02344 489 ekgiweplavklqtiktaiesavlllrid 517
                   + + ++++  ++++  a+e+++ +lr+ 
  MMETSP1174-20130828|21350_1 344 PARVLDSYSASTRAVEMAVEASIAVLRMG 372
                  56788999999999999****99999985 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0032       2.2     227     352 ..      73     199 ..      30     216 .. 0.76
   2 !    5.3   0.0    0.0018       1.2     361     419 ..     241     299 ..     235     328 .. 0.78
   3 !    9.7   0.0   8.3e-05     0.057     474     518 ..     332     376 ..     302     380 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0032
    TIGR02346 227 kdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspee.lGlvdsvkveeigskkv 352
                      va f c+l++  ++ +        +  l    +e ++++ l+k+++ds v ++ ++  +    +  +   +il ++  s   ++ + ++ ga  +   +a+  e+ lG ++ ++v+ + +++ 
  MMETSP1174-20130828|21350_1  73 TAFSVALFDCSLQAPPSDFRIESSAVMDQRALSAKSAEIQMLDLLLKQFTDSRVALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDPTAVLAENaLGAIKHIEVRYLEDHRE 199
                  445678888888887777665444444455566566677888999***************************************************9999998888775389999999988777665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0018
    TIGR02346 361 dskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkya 419
                   + ++t++Lr   ++ ++++  +++  + v+ + +k+   l+Gag  e+ +a  lk+  
  MMETSP1174-20130828|21350_1 241 RATMATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRM 299
                  5789********************9999999*****************99988887643 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 8.3e-05
    TIGR02346 474 iekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  +++++ a +d++ ++++D+++a + a+++a ea ++vL++   ++
  MMETSP1174-20130828|21350_1 332 LDRDDWADRDTEPARVLDSYSASTRAVEMAVEASIAVLRMGGSVL 376
                  6777777799999*************************9876665 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0023       1.6     289     367 ..     126     206 ..      99     228 .. 0.80
   2 !   10.9   0.0   3.7e-05     0.025     373     428 ..     245     300 ..     237     324 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0023
    TIGR02347 289 gfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealns.vedltpeslGyaGlvyetvigeek.ytfieev 367
                    +v+ q+ i p     la+++ila++r   r +  ++ + G   + +    l +++lG   ++    +++ + y f+e +
  MMETSP1174-20130828|21350_1 126 VALVASQRLIHPYLRRNLASREILAVQRLSLRHIKSVQRISGALIVSDpTAVLAENALGAIKHIEVRYLEDHReYLFVEAA 206
                  4578899999999999************************99988766255677899999999988888775448998865 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 3.7e-05
    TIGR02347 373 vtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekk 428
                   t+++++p +++++ ++ +v+  +  ++n +++  ++aGag +e+ ++++lk++  
  MMETSP1174-20130828|21350_1 245 ATLILRAPSNQSVEELRVTVQGLMMVLSNGLKEPYALAGAGVWEASVAAYLKSRMG 300
                  79******************9888899************************97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 1203.61
//
Query:       MMETSP1174-20130828|21353_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 438.09
//
Query:       MMETSP1174-20130828|21356_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 203.48
//
Query:       MMETSP1174-20130828|21352_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:01.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|21360_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 444.36
//
Query:       MMETSP1174-20130828|21364_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|21361_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1441.18
//
Query:       MMETSP1174-20130828|21362_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   14.6   0.2      0.011   13.2   0.1    1.8  2  TIGR01712 phage_N6A_met: phage N-6-adenine-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01712  phage_N6A_met: phage N-6-adenine-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.31   1.3e+03      64      84 ..     129     149 ..     124     153 .. 0.84
   2 !   13.2   0.1   2.6e-06     0.011      18      59 ..     903     945 ..     886     951 .] 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.31
    TIGR01712  64 vflnPPYsrarryvekaaeat 84 
                  + +n  Y + + +++k ae t
  MMETSP1174-20130828|21362_1 129 IQENRAYNKQELFIKKIAEST 149
                  66899999********99876 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.6e-06
    TIGR01712  18 devfaale.lfgkfvLDaaaseenavCakyyteednaLkreWs 59 
                  +  f+ l  +fg+f +Da+as  na   +y+++ ++     W 
  MMETSP1174-20130828|21362_1 903 KANFNRLArMFGPFSVDAFASASNATVVRYFSQYNDVQSAGWD 945
                  5568888889***********************9999888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3303.20
//
Query:       MMETSP1174-20130828|21365_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-05   20.2  13.5    0.00026   18.5   0.6    5.3  6  TIGR03804 para_beta_helix: parallel beta-helix repeat
  ------ inclusion threshold ------
       0.05   11.4   0.1       0.05   11.4   0.1   10.7 11  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0022       4.5      11      41 ..     254     283 ..     248     284 .. 0.85
   2 ?   -1.9   0.0       0.3   6.1e+02       5      25 ..     408     428 ..     407     434 .. 0.83
   3 !   18.5   0.6   1.3e-07   0.00026       9      43 ..     450     484 ..     444     485 .. 0.92
   4 ?   -2.9   0.0      0.62   1.3e+03      28      43 ..     496     510 ..     489     511 .. 0.68
   5 ?   -2.2   0.0      0.37   7.6e+02      34      41 ..     533     540 ..     529     546 .. 0.63
   6 ?    1.4   0.0     0.027        55      11      29 ..     557     575 ..     553     576 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0022
    TIGR03804  11 tlenNtasnNsy.GIyLydSsnNtlsnNtasn 41 
                  t  n+ a + ++ G y++ S  N  ++Nta+ 
  MMETSP1174-20130828|21365_1 254 TFMNCSAAGYGGgGMYISKS--NAAIGNTAFQ 283
                  6789999999999****888..99*****975 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.3
    TIGR03804   5 esssnntlenNtasnNsyGIy 25 
                  ++ s+++  ++ a + ++G y
  MMETSP1174-20130828|21365_1 408 YNMSSCSFIDCVADEDGGGLY 428
                  566889999999999999988 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 1.3e-07
    TIGR03804   9 nntlenNtasnNsyGIyLydSsnNtlsnNtasnNg 43 
                  n++  ++ a +N++GI+++dSs  t+ ++++ +N+
  MMETSP1174-20130828|21365_1 450 NSNFMGCYAKSNGGGICVHDSSSVTIGDCEFESNS 484
                  6779*****************************97 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 0.62
    TIGR03804  28 dSsnNtlsnNtasnNg 43 
                  + sn t++ +t+  N+
  MMETSP1174-20130828|21365_1 496 G-SNATIKHCTFGANT 510
                  3.47788888887775 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 0.37
    TIGR03804  34 lsnNtasn 41 
                  l++N+as+
  MMETSP1174-20130828|21365_1 533 LRKNSASS 540
                  56666665 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.027
    TIGR03804  11 tlenNtasnNsyGIyLydS 29 
                    + N a++ ++GIy+++S
  MMETSP1174-20130828|21365_1 557 VFTANSATEMGGGIYVHYS 575
                  466799999999***9998 PP

>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.18   3.7e+02       6      27 ..     228     248 ..     225     249 .. 0.70
   2 ?    1.2   0.1     0.041        85       5      18 ..     253     266 ..     250     269 .. 0.83
   3 ?   -0.3   0.8      0.12   2.5e+02       4      22 ..     279     297 ..     277     300 .. 0.74
   4 ?    0.2   0.5     0.086   1.8e+02       5      19 ..     332     346 ..     331     352 .. 0.81
   5 ?    1.5   0.0     0.033        68      11      22 ..     419     430 ..     411     432 .. 0.76
   6 ?   -5.0   1.7         2   4.1e+03      16      20 ..     433     437 ..     433     437 .. 0.95
   7 ?    4.9   0.1    0.0027       5.5      11      22 ..     457     468 ..     452     473 .. 0.83
   8 ?    9.2   0.1   0.00012      0.25       3      19 ..     476     492 ..     474     496 .. 0.88
   9 ?    4.1   0.1    0.0048       9.8       5      20 ..     504     519 ..     500     523 .. 0.85
  10 ?    9.1   0.4   0.00013      0.26       9      21 ..     535     546 ..     530     550 .. 0.90
  11 ?   11.4   0.1   2.4e-05      0.05       6      21 ..     557     572 ..     556     575 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.18
    TIGR01376   6 lFsnNsakgsGGAIyatgkisi 27 
                  +F n      GG Iya  + +i
  MMETSP1174-20130828|21365_1 228 TFMNSWTYSTGGCIYAY-DTTI 248
                  5666666678999*997.7776 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.041
    TIGR01376   5 ilFsnNsakgsGGA 18 
                  ++F n sa+g+GG+
  MMETSP1174-20130828|21365_1 253 VTFMNCSAAGYGGG 266
                  899999****7775 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.12
    TIGR01376   4 tilFsnNsakgsGGAIyat 22 
                  ++ F + s+ g+GG+++ +
  MMETSP1174-20130828|21365_1 279 NTAFQSCSSDGNGGGLFVD 297
                  56666668899***98865 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.086
    TIGR01376   5 ilFsnNsakgsGGAI 19 
                  ++F+  +a +sGG++
  MMETSP1174-20130828|21365_1 332 TSFTRGYARNSGGGL 346
                  68888899*****97 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.033
    TIGR01376  11 sakgsGGAIyat 22 
                   a + GG++y++
  MMETSP1174-20130828|21365_1 419 VADEDGGGLYTS 430
                  67789*****98 PP

  == domain 6    score: -5.0 bits;  conditional E-value: 2
    TIGR01376  16 GGAIy 20 
                  GG+Iy
  MMETSP1174-20130828|21365_1 433 GGGIY 437
                  9***9 PP

  == domain 7    score: 4.9 bits;  conditional E-value: 0.0027
    TIGR01376  11 sakgsGGAIyat 22 
                  +ak +GG+I+  
  MMETSP1174-20130828|21365_1 457 YAKSNGGGICVH 468
                  799******986 PP

  == domain 8    score: 9.2 bits;  conditional E-value: 0.00012
    TIGR01376   3 gtilFsnNsakgsGGAI 19 
                  g+  F++Nsa+  GG++
  MMETSP1174-20130828|21365_1 476 GDCEFESNSAGQDGGGL 492
                  7788**********985 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.0048
    TIGR01376   5 ilFsnNsakgsGGAIy 20 
                   +F  N+a   GGA++
  MMETSP1174-20130828|21365_1 504 CTFGANTASLEGGALA 519
                  68889*********97 PP

  == domain 10    score: 9.1 bits;  conditional E-value: 0.00013
    TIGR01376   9 nNsakgsGGAIya 21 
                  +Nsa  sGG+Iya
  MMETSP1174-20130828|21365_1 535 KNSAS-SGGGIYA 546
                  89***.******8 PP

  == domain 11    score: 11.4 bits;  conditional E-value: 2.4e-05
    TIGR01376   6 lFsnNsakgsGGAIya 21 
                  +F+ Nsa++ GG+Iy 
  MMETSP1174-20130828|21365_1 557 VFTANSATEMGGGIYV 572
                  6**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 2119.16
//
Query:       MMETSP1174-20130828|21359_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1590.01
//
Query:       MMETSP1174-20130828|21366_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 797.43
//
Query:       MMETSP1174-20130828|21367_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 533.24
//
Query:       MMETSP1174-20130828|21369_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 509.10
//
Query:       MMETSP1174-20130828|21371_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1178.69
//
Query:       MMETSP1174-20130828|21373_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   44.8   0.0    1.8e-08   32.2   0.0    2.2  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.6e-11   40.3   0.0    7.6e-10   36.3   0.0    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.6e-10   37.5   0.3    6.9e-06   23.5   0.0    2.5  3  TIGR02415 23BDH: acetoin reductases
    3.2e-09   33.5   0.0    4.4e-07   26.5   0.0    2.1  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    6.1e-09   33.7   0.6    6.1e-06   23.9   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.9e-08   31.3   0.0    3.7e-05   21.2   0.0    2.2  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.5e-06   24.0   0.2     0.0045   14.2   0.0    2.2  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    0.00035   17.6   0.7       0.13    9.1   0.0    2.2  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00058   16.9   0.0     0.0011   15.9   0.0    1.4  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0017   15.7   0.0     0.0025   15.2   0.0    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.017   11.5   0.0      0.029   10.7   0.0    1.3  1  TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein
      0.017   12.2   0.1       0.03   11.4   0.1    1.6  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.4e-11   1.8e-08       1     116 [.       5     121 ..       5     126 .. 0.79
   2 !   10.3   0.0   0.00026     0.088     147     194 ..     212     267 ..     205     288 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 5.4e-11
    TIGR01830   1 alvtGasrgiGkaiakklake....gakvviterskeekaeelaeelkeagvk.aaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmk.eedwdevikvnLkgvfnvtk 116
                  +++tG +  +G +ia +la++      kv++t r +++  ++++   + +g++ +   +ldv+dee+++++++++++e+g+ d+l+nnA      l+lr   e+ + + ++vn  g ++++k
  MMETSP1174-20130828|21373_1   5 VVITGCTGHLGCEIAAQLADKlvknDGKVIFTARDESRGRADVRRLASYNGRRnVFFEQLDVADEESISAFCKKCTREYGSPDLLINNAA-----LCLRGAdENTFVDAMAVNFWGPYHLMK 121
                  589**********99988765111156899998888888888888888888761556789*****************************6.....555544045688888888888887766 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00026
    TIGR01830 147 nYaasKaGligltkslakElas.......rnitvnavaPGfi.etdmteklsekvk 194
                   Y+ sKa l  lt+++a   +s       ++  vnav+PG i  + m + +s++  
  MMETSP1174-20130828|21373_1 212 SYSVSKAALNCLTRTTAASAGSssssssrKACSVNAVCPGDIvGSAMYSGVSSQAD 267
                  69************9998765422222227899*******6625778777766655 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.2e-12   7.6e-10       2     116 ..       3     119 ..       2     127 .. 0.72
   2 ?    1.6   0.0     0.085        29     149     184 ..     212     254 ..     200     277 .. 0.69

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.2e-12
    TIGR01963   2 kvalvtGaasGiglaiakela....aaGakvvvndle.eeaaeaaakeleeagg.evlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafht 116
                  +++++tG ++ +g +ia +la    ++  kv+++  + + +++ +++ ++ +g  +v   ++dv++ee+i+   ++ ++e+gs d+L+nnA +         ++++f   +avn  +++h+
  MMETSP1174-20130828|21373_1   3 RTVVITGCTGHLGCEIAAQLAdklvKNDGKVIFTARDeSRGRADVRRLASYNGRrNVFFEQLDVADEESISAFCKKCTREYGSPDLLINNAALCL----RGADENTFVDAMAVNFWGPYHL 119
                  89********999988877762222555677777777355566666666666541677789******************************9853....3334455555555555555555 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.085
    TIGR01963 149 aYvaaKHglvGltKvlAlEv.......AetgitanaicPgyvr 184
                  +Y  +K +l  lt+++A           ++   +na+cPg + 
  MMETSP1174-20130828|21373_1 212 SYSVSKAALNCLTRTTAASAgssssssSRKACSVNAVCPGDIV 254
                  6888888888899888865411111114456889*****9665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     2e-08   6.9e-06       2      89 ..       4      97 ..       3     121 .. 0.74
   2 ?   -2.2   0.0       1.4   4.7e+02     215     230 ..     172     187 ..     152     192 .. 0.78
   3 !   11.5   0.1     9e-05     0.031     147     197 ..     210     268 ..     197     298 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2e-08
    TIGR02415  2 valvtGaaqGiGkaiaerLa....k.dGfavavadln.eetaketakelkekgtkavav.kldvsdkseveeaveqaveklGeldvlvnnaGval 89
                 + ++tG++  +G +ia +La    k dG +v+ +  +  +  +++ +  + +g + v++ +ldv+d +++ +  +++++++G+ d+l+nna ++l
  MMETSP1174-20130828|21373_1  4 TVVITGCTGHLGCEIAAQLAdklvKnDG-KVIFTARDeSRGRADVRRLASYNGRRNVFFeQLDVADEESISAFCKKCTREYGSPDLLINNAALCL 97
                 7799***999999998766522224255.555555551555566666666788888776379*****************************9986 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.4
    TIGR02415 215 klGresePedvaelvs 230
                  +l    +P+dv+++v+
  MMETSP1174-20130828|21373_1 172 ALQACVTPDDVTSVVA 187
                  4556679*****9998 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 9e-05
    TIGR02415 147 lsaysstkfavrgltqtaakeL.......akkgitvnayaPG.ivktemreeideklae 197
                     ys +k a+  lt+t a          + k   vna +PG iv  +m + + ++  +
  MMETSP1174-20130828|21373_1 210 TPSYSVSKAALNCLTRTTAASAgssssssSRKACSVNAVCPGdIVGSAMYSGVSSQADN 268
                  568************98776541111111457889******9999****9999877654 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-09   4.4e-07     415     516 ..       3     108 ..       2     139 .. 0.84
   2 !    5.1   0.0    0.0038       1.3     562     621 ..     209     274 ..     177     281 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
    TIGR02632 415 rvalvtGgasGiGrevarrlvd....eGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleetelee 516
                  r +++tG ++ +G e+a +l+d    +   v+ +  d+ + +a  + l +  G  ++   +ldv+dee++ a  ++ +++yG  d+++nna +      e+t  + 
  MMETSP1174-20130828|21373_1   3 RTVVITGCTGHLGCEIAAQLADklvkNDGKVIFTARDESRGRADVRRLASYNGRRNVFFEQLDVADEESISAFCKKCTREYGSPDLLINNAALCLRGADENTFVDA 108
                  567899999999999998776522216778999999****99999**********************************************998877666665555 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0038
    TIGR02632 562 nalaysaakaaeahlvrllaielae.......lgirvntvaPdavlrGsgifagewrekraaaygie 621
                  ++ +ys +kaa + l r+ a+  ++       +   vn+v P  ++ Gs++++g   ++   a+g e
  MMETSP1174-20130828|21373_1 209 DTPSYSVSKAALNCLTRTTAASAGSssssssrKACSVNAVCPGDIV-GSAMYSGVSSQADNDASGTE 274
                  5668****************9876522211114678******9887.9****998877776666655 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.8e-08   6.1e-06       3      88 ..       5      95 ..       3     115 .. 0.82
   2 !    8.1   0.1    0.0012      0.41     149     189 ..     212     260 ..     201     282 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.8e-08
    TIGR01829  3 alvtGglgGiGtaickrl....akdGykvvanvapneerakewlqekevegf.dvavvkadvssfeeakaavakveaelGpvdvlvnnaGi 88
                  ++tG++g +G +i+ +l    +k+  kv+ + + ++  ++++ +  + +g  +v + + dv++ e+ +a  +k + e G+ d+l+nna +
  MMETSP1174-20130828|21373_1  5 VVITGCTGHLGCEIAAQLadklVKNDGKVIFTARDESRGRADVRRLASYNGRrNVFFEQLDVADEESISAFCKKCTREYGSPDLLINNAAL 95
                 689********9998776111156677899999999999999988888877526778889****************************976 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0012
    TIGR01829 149 nysaakaGliGftkalaqe.......gakkgvtvnviaPGyi.atemvk 189
                   ys +ka l  +t++ a+        +++k+ +vn+++PG i   +m +
  MMETSP1174-20130828|21373_1 212 SYSVSKAALNCLTRTTAASagsssssSSRKACSVNAVCPGDIvGSAMYS 260
                  69*******99998877641111111467899********761455655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   3.7e-05       6      99 ..       3     105 ..       2     121 .. 0.76
   2 !    8.0   0.0    0.0012       0.4     150     187 ..     210     254 ..     198     274 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.1e-07
    TIGR01832   6 kvalvtGantGlGqgiavgla....eaGadivgvgisel...setqekvealGrkflsl.kadladeeaakalvdeaveeagkidilvnnaGiirr.edavef 99 
                  +++++tG+   lG  ia  la    +  ++++ +++ e     + +   +  Gr+   + ++d+adee+++a+ ++ + e g  d l+nna +  r +d   f
  MMETSP1174-20130828|21373_1   3 RTVVITGCTGHLGCEIAAQLAdklvKNDGKVIFTARDESrgrADVRRLASYNGRRNVFFeQLDVADEESISAFCKKCTREYGSPDLLINNAALCLRgADENTF 105
                  6789************9999833334566777777655411144555667789987776369*****************************987651555555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0012
    TIGR01832 150 vpsytasksavaGltkllane.......wakkginvnaiaPGyle 187
                   psy+ sk a+  lt++ a+         ++k+  vna+ PG + 
  MMETSP1174-20130828|21373_1 210 TPSYSVSKAALNCLTRTTAASagsssssSSRKACSVNAVCPGDIV 254
                  59**************998652222211567899********876 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05    0.0045       4      91 ..       3      96 ..       2     124 .. 0.71
   2 !    7.9   0.1    0.0011      0.39     151     200 ..     212     269 ..     178     281 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
    TIGR03206  4 kvaivtgggggiggaicrrfaeegakv..avldlnaeaaekvaa..airekggkaeav..avditdrasvdaavaaaeealgpvdvlvnnagwd 91
                 +++++tg +g +g+ i  ++a++  k    v+  +++ ++  a+  ++++  g+ + +  + d++d++s+ a    +++  g  d+l+nna   
  MMETSP1174-20130828|21373_1  3 RTVVITGCTGHLGCEIAAQLADKLVKNdgKVIFTARDESRGRADvrRLASYNGRRNVFfeQLDVADEESISAFCKKCTREYGSPDLLINNAALC 96
                 689**********9999998877655322344455555555554226777778777764579****************************9764 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0011
    TIGR03206 151 vyaackgglvafsktlar.......elarhgitvnvvcpgpt.dtalledvkseaekp 200
                   y++ k  l ++++t a          +r+  +vn vcpg    +a++  v+s+a++ 
  MMETSP1174-20130828|21373_1 212 SYSVSKAALNCLTRTTAAsagssssSSSRKACSVNAVCPGDIvGSAMYSGVSSQADND 269
                  46777777777766665411111114689***********852678888888888875 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00039      0.13       4      93 ..       5      94 ..       2     156 .. 0.77
   2 !    7.0   0.1    0.0017      0.58     156     204 ..     196     251 ..     177     268 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00039
    TIGR02685  4 alvtGaakriGrsiavklhqe....Gyrvvlhyr.rsaeaa.sslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93
                  ++tG++  +G  ia +l ++      +v+   r +s + a ++  a  n +r+      + d++  +s+ + c+     c r++G  d+l+nna+
  MMETSP1174-20130828|21373_1  5 VVITGCTGHLGCEIAAQLADKlvknDGKVIFTARdESRGRAdVRRLASYNGRRN--VFFEQLDVADEESISAFCK----KCTREYGSPDLLINNAA 94
                 589999999999998776544111133444443314444331344556676664..4567899999999988887....599************96 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0017
    TIGR02685 156 vnlvdamtdqpllgfslytmakealeGltrsaalelas.......lqirvngvapG 204
                   +l+da  d+       y+++k al+ ltr++a    s       +   vn+v+pG
  MMETSP1174-20130828|21373_1 196 RDLIDAGSDLAYGDTPSYSVSKAALNCLTRTTAASAGSssssssrKACSVNAVCPG 251
                  57899999999999999*************87765433111111134679999998 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06    0.0011       1      84 [.       4     119 ..       4     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
    TIGR01214   1 rilitGakgqlgreLveqlsk....egsevvaltrs.......................qldledpealeellrei.....kPdvvvntaAytdVDkaEseaekayavNalatenl 84 
                  +++itG +g lg e+++ql+     ++ +v+ + r+                       qld++d e++    ++       Pd+++n aA       E+    a avN+ ++++l
  MMETSP1174-20130828|21373_1   4 TVVITGCTGHLGCEIAAQLADklvkNDGKVIFTARDesrgradvrrlasyngrrnvffeQLDVADEESISAFCKKCtreygSPDLLINNAALCLRGADENTFVDAMAVNFWGPYHL 119
                  589********998888877422112223333333379*****************************998877764222346**********99999999999*********9988 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.3e-06    0.0025       5     102 ..       4     106 ..       2     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.3e-06
    TIGR01289   5 tviitgassglglaaakalvek...gkwhvvmacrdlekaekaakslglpkdsytil..kldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfs 102
                  tv+itg +  lg + a  l++k    + +v+++ rd  +     ++l   ++   ++  +ld+a  +s+  f ++  +   s d l+ naa+ l  ++e +f 
  MMETSP1174-20130828|21373_1   4 TVVITGCTGHLGCEIAAQLADKlvkNDGKVIFTARDESRGRADVRRLASYNGRRNVFfeQLDVADEESISAFCKKCTREYGSPDLLINNAALCLRGADENTFV 106
                  9***********99998888753325679********99988888887766655554338***************99999999***************99875 PP

>> TIGR02294  nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.6e-05     0.029     198     323 ..     174     295 ..     168     301 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.6e-05
    TIGR02294 198 tvkviPdaetralalesGevdlifgnegvlsldtfaqlkedkkYatalsq.PletrlLllntgkealsdlkvrqalnhavnkkaiikeilkGlekkadtlfaknvpyadidlkpskYdvekaealLd 323
                  ++ v Pd  t ++a++ G + l     +++++++   + ++++Y+++ ++    tr+ +  +g +  s  +   ++n     + +   +  G   +ad+  a+ +  + + ++ps+Ydv+ a+a+ d
  MMETSP1174-20130828|21373_1 174 QACVTPDDVTSVVAMQGGRTLL----RDLIDAGSDLAYGDTPSYSVSKAAlNCLTRTTAASAGSSSSSSSRKACSVNAVCPGDIVGSAMYSGVSSQADND-ASGTEMTSLMMPPSEYDVSAARAAAD 295
                  67799***********999855....379***************99776425668887777777766666555566666666666667778*******96.7788999************9998766 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.8e-05      0.03       1      41 [.       4      46 ..       4     123 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.8e-05
    TIGR01746  1 tvlLTGAtGfLGaylleeLlrrs..teakviClVRakseehal 41
                 tv++TG tG LG +++++L ++   ++ kvi   R +s+  a 
  MMETSP1174-20130828|21373_1  4 TVVITGCTGHLGCEIAAQLADKLvkNDGKVIFTARDESRGRAD 46
                 69*****************998755688999888888876664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1191.57
//
Query:       MMETSP1174-20130828|21374_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-83  278.2   0.0    1.6e-83  277.9   0.0    1.0  1  TIGR01802 CM_pl-yst: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR01802  CM_pl-yst: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9   0.0     4e-87   1.6e-83       2     246 ..      17     264 ..      16     265 .. 0.95

  Alignments for each domain:
  == domain 1    score: 277.9 bits;  conditional E-value: 4e-87
    TIGR01802   2 klenirselirledtiifklleraqfalnkkvyea.....gavkeleefdgslleyllketeklhakvrrfksPdeyPffpdkle.kpilkplkypkilaeaanevnvnekilkvyvedivPkiskkgegeddenyGstavcdveclqalsrrihfGkfvaeakflaepekykklikakdkealeeaitkaaveekvlkrlakkarvyGvdvkvdeeseakidlelvvdlykdyviPltkeveveyllrrl 246
                  +l+ +r+ lir+e+tii+ l+eraq+++n+++y++     g +  l e  gs+l+++l+etek+ha++rr+ksP+e+ ffp+ l+ ++il+pl+yp +l+  ++ +nvn+ ++++y +++vP+i+  g   dd+ +Gs+a cd+++lqalsrrih Gkfvae+kf +++e+ ++l+ka+d++++ + +t+  vee++  r + ka  yG+d+ ++ +++ k+d++++v++y+d+++Pltk+v++ yl+ r+
  MMETSP1174-20130828|21374_1  17 SLDSVRKTLIRQEETIIYALIERAQYCRNDEIYQPlvgipGVEPWLIERGGSFLDFMLSETEKVHARARRYKSPEEHAFFPECLPaETILEPLDYPSVLTASSKGINVNSLVMDTYQNQLVPAICLDG---DDQQHGSSALCDITVLQALSRRIHNGKFVAESKFSQNTEELTALVKARDVDGIYDFLTFKVVEEQICARARVKAALYGQDAFFESDAGFKVDPNMIVSIYRDMIMPLTKQVQILYLFDRV 264
                  799******************************97432213334678889**********************************8579**************************************75...67789***************************************************************************************************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1258.30
//
Query:       MMETSP1174-20130828|21375_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 731.94
//
Query:       MMETSP1174-20130828|21372_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 2188.56
//
Query:       MMETSP1174-20130828|21370_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   12.3  42.4      0.011   11.2  28.9    1.5  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.19    7.1  38.6       0.28    6.6  26.8    1.3  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2  28.9   5.5e-06     0.011     275     950 ..      67     303 ..      34     335 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.5e-06
    TIGR02168 275 ekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqlee.rrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlsee 950
                  ++++ +++ ++  k+ q l+++ +++e+e+  l e  ++l+++++ le++l+  e+++ ++ e++++lee ++ l++++e+le +lee+e el+  +++l  +e + ++  ++v+el+ + +++  + +++ a+l+ l   ++e  +q ++++++++ +a  +++ l+++l+ +e+   +l+++l+++ee+l       +++ +++++ e  ++   +++   e+  +n ++                                                                                                                                                                                                                                                                                                                                                                                                                                                        + +ee
  MMETSP1174-20130828|21370_1  67 RFNRQNTSTNADAKKNQHLENRSAACEREKTNLVEANSALKEKIQLLENRLAACERENINQGEAKSSLEEAFTLLTARCEQLEGSLEEKETELQVGRQNLVRCEHAKTQILQKVDELTTESKKICGDSKEAIATLNGLILiEQEDKEQMRKAADSSAAKAARKIQSLEAKLDASEKSAGNLRSKLNDTEETLVLEILLKDKVAEQVKANETLMHAQVQKISEQEQTINNIST--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QRMEE 303
                  4556666667777777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888777777765413334444455555666677777777777777777777777777777777765533333333333333333332222232222222222222........................................................................................................................................................................................................................................................................................................................................................................................................................................................22222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  26.8   0.00014      0.28     701     978 ..      71     344 ..      15     357 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00014
    TIGR02169 701 iekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels..eekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeeeepeeelslekvkk......elekveeeleaLepvNmkA 978
                  ++   ++  +k ++ e++  + e+e  +l e +++lke+++ le++l ++e+e  ++ e + +le+    l+++ ++l+  le+ e el+  ++++ + e+ + ++ ++v ++    ++i  + ++   + + l   e +++++ ++++++                ++ +++++ lea++   e++ ++L+++ ++ e+ l      k++++++++ +++ ++ + +k++++e+ ++++  +  +e +   e  l  e +++      +++++e + ++Le++N++ 
  MMETSP1174-20130828|21370_1  71 QNTSTNADAKKNQHLENRSAACEREKTNLVEANSALKEKIQLLENRLAACERENINQGEAKSSLEEAFTLLTARCEQLEGSLEEKETELQvgRQNLVRCEHAKTQILQKVDELTTESKKICGDSKEAIaTLNGLILIEQEDKEQMRKAADSSA--------------AKAARKIQSLEAKLDASEKSAGNLRSKLNDTEETLVLEILLKDKVAEQVKANETLMHAQVQKISEQEQTINNISTQRmEEAQMAWEDPLAWEVINEktmealTKQQMEVAQMSLEDINIEP 344
                  233333333334444444444444444444444444444444444444444444444444444444444444444444444444443332112333333333333333333333333333222222221222222223333333333333333..............4445555555555555555555555555555555444444444555555555555555555555555555555544433333333333333333331111113567777778899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       428  (0.104339); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.51
# Mc/sec: 952.39
//
Query:       MMETSP1174-20130828|21376_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1512.22
//
Query:       MMETSP1174-20130828|21379_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|21377_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   34.3   0.1     0.0009   16.3   0.0    2.7  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.2e-05   21.5   3.7      0.022   11.6   0.0    2.7  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.7e-05   19.4   0.0     0.0006   16.2   0.0    2.0  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      9e-05   20.1  10.3     0.0023   15.5   0.0    3.6  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
    0.00011   19.8   0.0       0.07   10.5   0.0    2.4  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
      0.033   10.8  10.0        0.8    6.2   0.0    3.1  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-06    0.0009     146     238 ..      10     102 ..       3     109 .. 0.86
   2 !   14.3   0.0   5.5e-06    0.0038       5      76 ..     196     264 ..     192     272 .. 0.84
   3 ?   -0.8   0.2       0.2   1.4e+02     459     509 ..     454     514 ..     373     550 .. 0.43

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-06
    TIGR01628 146 ieklNgvllndkevyvgkfikksereatkekkft.NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAvee 238
                  ++++N + l+  e++    +  + r a++ ++f   + ++ ++ s ++ +l++  a++  +    ++  + + +rgfafv + + +dA   +++
  MMETSP1174-20130828|21377_1  10 MNEMNEMNLDGVEMKETTIT-MEVRGAAPPQQFSsTIMIRGIPLSTNDRTLEQALAPYKPLNVRLIRSKDTGGSRGFAFVDFSTVNDAVALMDK 102
                  68899999999887766555.555558999999725899*****************************99******************998886 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 5.5e-06
    TIGR01628   5 vGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmw 76 
                  v  Ld++ t+  + ++F++ ++v  vR+ r+  +r    +aYv f + + A + ++t+   ++ + ++Rl++
  MMETSP1174-20130828|21377_1 196 VKSLDPNSTDLSIADAFRSYAQVKEVRMIRERHAR---PFAYVEFYSVEYAVHVMNTAKSLKIDDSVVRLAF 264
                  66789999999999999999999999999987754...6899999999999999999999999999999876 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.2
    TIGR01628 459 r..........rnlnnr.nrnvlgnm.nkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnn 509
                             +n n   + + ++++ n ++q  ++k+n +++++  + q   +m+++  d++
  MMETSP1174-20130828|21377_1 454 VsfglkgvvgtTNNNSAaAGSKQSGKaNAAHQSITAKKNLKDITKWGDRQR--EMTSADSDGK 514
                  022222221111111111111122212344444445555555544442222..3444444433 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   3.2e-05     0.022     224     278 ..      47     100 ..      14     127 .. 0.75
   2 !   10.0   0.1   9.5e-05     0.065     127     172 ..     199     241 ..     193     256 .. 0.79
   3 ?   -2.1   0.5      0.44     3e+02     300     355 ..     504     563 ..     492     577 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
    TIGR01622 224 vGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAl 278
                  + ++  +  +  L q   p+ ++ +v+l + ++tG s+G+ F+ Fs  + a + +
  MMETSP1174-20130828|21377_1  47 IRGIPLSTNDRTLEQALAPYKPL-NVRLIRSKDTGGSRGFAFVDFSTVNDAVALM 100
                  55566666777888888888876.69999*****************999887544 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 9.5e-05
    TIGR01622 127 lalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydve 172
                  l+   ++  + + F   ++v++vr+i++r++   +  aYvEFy ve
  MMETSP1174-20130828|21377_1 199 LDPNSTDLSIADAFRSYAQVKEVRMIRERHA---RPFAYVEFYSVE 241
                  5555666678889999**********99865...689******876 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.44
    TIGR01622 300 teesdaslaskfedsfdeseqsgld....lnteereqldekldrddekgsgalaiagtds 355
                   e + a+++ k + ++++++++g +    +++ + +  + +l+   + g+g+++++ t+ 
  MMETSP1174-20130828|21377_1 504 REMTSADSDGKIAHQLQQQHRGGGGggggGGGAASSLKKTALATTTTTGGGGGGLETTGI 563
                  455667777788888777777654411103445566666778888788888888877765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.7e-07    0.0006     274     351 ..      12      96 ..       3     111 .. 0.75
   2 ?    0.6   0.0     0.048        33     213     243 ..     219     249 ..     203     269 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.7e-07
    TIGR01642 274 knsdinlkavekl........vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvt 351
                  +  ++nl++ve           ++    +    + i ++Pl  +d  + + L ++ +L    li+  +tG s+G+aF+++   +++
  MMETSP1174-20130828|21377_1  12 EMNEMNLDGVEMKettitmevRGAAPPQQFSSTIMIRGIPLSTNDRTLEQALAPYKPLN-VRLIRSKDTGGSRGFAFVDFSTVNDA 96 
                  5555666666555555543322222233446789***********************97.69******************988775 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.048
    TIGR01642 213 kavkaviinkdkkFaflEfrtveeatlalal 243
                  k v  +   + + Fa++Ef +ve a  +++ 
  MMETSP1174-20130828|21377_1 219 KEVRMIRERHARPFAYVEFYSVEYAVHVMNT 249
                  4444445556678************999964 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.3e-06    0.0023     105     164 ..      40      98 ..       4     133 .. 0.79
   2 ?    3.8   0.0     0.011       7.8      98     185 ..     182     266 ..     131     270 .. 0.83
   3 ?   -0.2   4.8       0.2   1.3e+02      44     111 ..     503     573 ..     462     578 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.3e-06
    TIGR01659 105 asgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqr 164
                  + ++ +++  +p   +dr l   +    p+n  r++r   tg s g+afvdf++  d+  
  MMETSP1174-20130828|21377_1  40 QFSSTIMIRGIPLSTNDRTLEQALAPYKPLN-VRLIRSKDTGGSRGFAFVDFSTVNDAVA 98 
                  455667788899999*****999999****9.59*******************9999865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
    TIGR01659  98 sddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar 185
                  +dd  +++ +  l+v  l  + td  +   fr+   +   r++r+ +   +  +a+v+f s   +   +++   + + +  +++++ar
  MMETSP1174-20130828|21377_1 182 ADDPTSTNPSPLLVVKSLDPNSTDLSIADAFRSYAQVKEVRMIRERH---ARPFAYVEFYSVEYAVHVMNTAKSLKIDDSVVRLAFAR 266
                  344445555567999*****************************975...4578999**99999999999999999999999999998 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.2
    TIGR01659  44 dtdfssypsssrsrrrgyndfsgaggssaatlgsvgnlanaastnslnslgsgg.sdd..ndtrasgtnli 111
                  + +++s  s ++  ++  +++ g+gg+++++ g+ + l ++a + +  ++g+gg  +    +t+++++nl+
  MMETSP1174-20130828|21377_1 503 QREMTSADSDGKIAHQLQQQHRGGGGGGGGGGGAASSLKKTALATTTTTGGGGGgLETtgISTTSDNSNLL 573
                  56778888888888888899999999999998999999887766665555544414443355667777775 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0001      0.07      65     144 ..      18      96 ..      10     122 .. 0.72
   2 !    6.6   0.0    0.0015       1.1     271     345 ..     193     265 ..     145     270 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
    TIGR01661  65 lnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreea 144
                  l+G+ +++ ti + +   +  +   + + + G+P +   + le+ ++p+   +  r++  + t+ s+G  f+ f   ++a
  MMETSP1174-20130828|21377_1  18 LDGVEMKETTITMEVRGAAPPQQFSSTIMIRGIPLSTNDRTLEQALAPYKP-LNVRLIRSKDTGGSRGFAFVDFSTVNDA 96 
                  556666666666555555555556677788888888888888888888854.5677777788888888888888766555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0015
    TIGR01661 271 cifvynlspdtde.avlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                   + v  l p++ + ++   f  +  v++v++ir+    + + +++v     + a+  +++    ++ + v++++f 
  MMETSP1174-20130828|21377_1 193 LLVVKSLDPNSTDlSIADAFRSYAQVKEVRMIRER---HARPFAYVEFYSVEYAVHVMNTAKSLKIDDSVVRLAFA 265
                  56667777765551455778888888888888876...77889999999999999999988888888888888875 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0012       0.8     237     301 ..      46     119 ..      40     129 .. 0.71
   2 ?   -3.1   8.9      0.79   5.4e+02     252     305 ..     213     266 ..     183     508 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0012
    TIGR01648 237 yvrnlmletteeiieksfsefkpGave..rvkki...rdyafvhfedredavkamdel....nGkeleGseiev 301
                   +r + l+t + ++e+ ++ +kp  v   r k     r +afv f+  +dav  md+      G  ++G ++ +
  MMETSP1174-20130828|21377_1  46 MIRGIPLSTNDRTLEQALAPYKPLNVRliRSKDTggsRGFAFVDFSTVNDAVALMDKSgrdgRGLYIDGRAVTL 119
                  6788889999999999999999988762255543333889************9999742211344566666555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.79
    TIGR01648 252 ksfsefkpGavervkkirdyafvhfedredavkamdelnGkeleGseievtlak 305
                  +s++++k   + r +  r +a+v f + e av+ m+     +++ s + +++a+
  MMETSP1174-20130828|21377_1 213 RSYAQVKEVRMIRERHARPFAYVEFYSVEYAVHVMNTAKSLKIDDSVVRLAFAR 266
                  4667788888888889999**************************999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.19s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 1707.94
//
Query:       MMETSP1174-20130828|21378_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   31.4   0.4      0.067    9.4   0.0    3.1  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    2.5e-08   31.7   0.5      0.039   11.5   0.0    3.2  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
     0.0012   17.0   0.2       0.26    9.4   0.0    2.9  3  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
  ------ inclusion threshold ------
      0.036   10.2   1.0        1.4    5.0   0.0    2.7  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   6.5e-05     0.067     554     616 ..      89     156 ..      84     161 .. 0.84
   2 !    9.3   0.0   7.1e-05     0.073     549     597 ..     171     222 ..     161     247 .. 0.79
   3 !    9.3   0.1     7e-05     0.071     553     589 ..     449     485 ..     440     497 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.5e-05
    TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd..G...tvkiaaadkeaaekakklieeitaev 616
                  +i ++++ i ++iG+ G++++ei  +t + i+ e +  G    v+i a+ +e++ +a +++++ ++e 
  MMETSP1174-20130828|21378_1  89 KIVLPREVIPALIGRRGATVKEIARSTHSLITAEMEtpGpavAVRIHATRAENCLNALSQVQDRVSES 156
                  6778999*********************99987765455444799**************999988775 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 7.1e-05
    TIGR03591 549 aPriet.ikinkdkireviGkgGkvireiieetgakidiedd..Gtvkiaaa 597
                   P ++t + i++ +++ +iG+ G+ ++++ +e g+ki+ ++   G+v  +a+
  MMETSP1174-20130828|21378_1 171 CPETTTvLLIPEAQVGLIIGSRGSEVKRLEQEAGVKISFQEGmsGEVPWTAM 222
                  5655441679999*************************99854477765555 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 7e-05
    TIGR03591 553 etikinkdkireviGkgGkvireiieetgakidiedd 589
                   +++++++ + ++iGk G++++++  +  ++i+ied 
  MMETSP1174-20130828|21378_1 449 VKVEVPRQYVPAIIGKQGAIVKQLSAQHRCHIHIEDA 485
                  46788999***************************95 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00079      0.81       3      53 ..      91     137 ..      89     151 .. 0.69
   2 !   11.5   0.0   3.8e-05     0.039       3      35 ..     179     211 ..     177     231 .. 0.87
   3 !    9.7   0.0   0.00014      0.15       2      36 ..     451     485 ..     450     500 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00079
    TIGR03665   3 kipkdrigvliGkkgevkkeieektkvkleidseeg..evkveeeeedplkvl 53 
                   +p++ i +liG++g + kei ++t+  ++ + e+   +v+v+      +++ 
  MMETSP1174-20130828|21378_1  91 VLPREVIPALIGRRGATVKEIARSTHSLITAEMETPgpAVAVR------IHAT 137
                  578999********************99998887741234443......2223 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.8e-05
    TIGR03665   3 kipkdrigvliGkkgevkkeieektkvkleids 35 
                   ip++++g++iG++g+  k++e++++vk+++++
  MMETSP1174-20130828|21378_1 179 LIPEAQVGLIIGSRGSEVKRLEQEAGVKISFQE 211
                  599**************************9986 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00014
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleidse 36 
                  v++p++ + ++iGk+g + k+++ + +++++i++ 
  MMETSP1174-20130828|21378_1 451 VEVPRQYVPAIIGKQGAIVKQLSAQHRCHIHIEDA 485
                  789***************************99875 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.29     3e+02      38      59 ..      91     112 ..      79     122 .. 0.68
   2 !    9.4   0.0   0.00025      0.26      35      68 ..     176     209 ..     172     216 .. 0.89
   3 ?    3.5   0.0     0.017        17     100     137 ..     447     484 ..     441     487 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.29
    TIGR01952  38 vvkkgemgvAiGkgGanvkkve 59 
                  v+ ++ + + iG+ Ga+vk++ 
  MMETSP1174-20130828|21378_1  91 VLPREVIPALIGRRGATVKEIA 112
                  3445556677888888888775 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00025
    TIGR01952  35 vvfvvkkgemgvAiGkgGanvkkveellgkkvel 68 
                   v+++ + ++g+ iG  G++vk++e+  g k++ 
  MMETSP1174-20130828|21378_1 176 TVLLIPEAQVGLIIGSRGSEVKRLEQEAGVKISF 209
                  5899**********************99999876 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.017
    TIGR01952 100 kvayvevepedkgvaiGkdGknierakelaeRhldidd 137
                    + vev ++  +++iGk+G  +++     + h+ i+d
  MMETSP1174-20130828|21378_1 447 YAVKVEVPRQYVPAIIGKQGAIVKQLSAQHRCHIHIED 484
                  56778999999999999999988887776666777766 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.036        36     580     636 ..      87     148 ..      77     167 .. 0.73
   2 ?    5.0   0.0    0.0013       1.4     578     616 ..     172     211 ..     115     221 .. 0.78
   3 ?    2.1   0.1      0.01        10     580     617 ..     448     485 ..     439     501 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.036
    TIGR02696 580 viavkipvdkigevigpkgkvinsiqdetgaeisiedd..g...tvyigaadgdsaeaaraa 636
                  ++++ +p + i  +ig +g ++ +i   t + i+ e +  g   +v i a+ ++++ +a ++
  MMETSP1174-20130828|21378_1  87 LLKIVLPREVIPALIGRRGATVKEIARSTHSLITAEMEtpGpavAVRIHATRAENCLNALSQ 148
                  678899999********************999997754113222344555555554444444 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0013
    TIGR02696 578 prviav.kipvdkigevigpkgkvinsiqdetgaeisied 616
                  p  ++v  ip  ++g +ig +g  + ++++e+g +is ++
  MMETSP1174-20130828|21378_1 172 PETTTVlLIPEAQVGLIIGSRGSEVKRLEQEAGVKISFQE 211
                  444444269****************************986 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.01
    TIGR02696 580 viavkipvdkigevigpkgkvinsiqdetgaeisiedd 617
                   ++v++p + +  +ig +g ++ ++  +   +i ied 
  MMETSP1174-20130828|21378_1 448 AVKVEVPRQYVPAIIGKQGAIVKQLSAQHRCHIHIEDA 485
                  578999*****************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.51
# Mc/sec: 1418.24
//
Query:       MMETSP1174-20130828|21380_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 542.62
//
Query:       MMETSP1174-20130828|21381_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1529.52
//
Query:       MMETSP1174-20130828|21387_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-16   55.3   0.0    5.5e-16   55.2   0.0    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-19   5.5e-16     887     939 ..       2      54 ..       1      55 [] 0.96

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.3e-19
    TIGR01369 887 vkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkk 939
                  +k+++fsf +l+gvd+vlg+em+stGEv+++gr+++ea+lkalla++++++++
  MMETSP1174-20130828|21387_1   2 CKMSMFSFDRLKGVDPVLGVEMASTGEVACFGRNKHEAFLKALLATGFRVPRE 54 
                  89*********************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|21390_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.4   0.0      0.083    9.8   0.0    2.1  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
  ------ inclusion threshold ------
      0.017   12.4   0.0       0.76    6.9   0.0    2.1  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0     4e-05     0.083     142     187 ..      48      93 ..      26      98 .. 0.78
   2 !    5.7   0.0   0.00073       1.5     211     275 ..     160     223 ..     156     229 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 4e-05
    TIGR02144 142 kdkdeaeallehkevlkgsqlklylvqEyinkpgRDiRvfviGdea 187
                  +d++    +l+ + + k ++++ +++qE +n+  R  +v+viG+e+
  MMETSP1174-20130828|21390_1  48 DDTHRITLVLKEEGLRKIPYTSSFVIQECVNHDARLFKVYVIGGEV 93 
                  56666666777777777888999********************996 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00073
    TIGR02144 211 vkvdeeveelavkaaeavggevvaiD.ivEskerGllvnEvndvpEfKntvrvtgvnvaeklveyv 275
                  + +d  +e +a     ++g ++ + D ++ s+++ l+v +vn  p fK+  ++     a++l  +v
  MMETSP1174-20130828|21390_1 160 IIIDTSLELVARELQRVFGLTLFGFDaVLVSQTNDLMVVDVNYFPSFKELKQTGE--FAHLLCTHV 223
                  56788889999999999999999999545677779*************9887754..355555555 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0    0.0046       9.4     144     187 ..      50      93 ..      25      96 .. 0.66
   2 ?    6.9   0.0   0.00037      0.76     219     263 ..     167     212 ..     158     217 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0046
    TIGR00768 144 kqeaekllealeqlke.kykvflvQeyikksggrdiRvfVvgdev 187
                   + +  +l+     k    ++f++Qe +++   r   v+V+g+ev
  MMETSP1174-20130828|21390_1  50 THRITLVLKEEGLRKIpYTSSFVIQECVNHDA-RLFKVYVIGGEV 93 
                  44444444443333333456899*******99.**********98 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00037
    TIGR00768 219 eelaikaakalgldvagiD.llesedkgllvlEvNasvefknsekv 263
                  e +a    +++gl + g D +l s+ + l+v+ vN  ++fk+++++
  MMETSP1174-20130828|21390_1 167 ELVARELQRVFGLTLFGFDaVLVSQTNDLMVVDVNYFPSFKELKQT 212
                  55677788999********54567778**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1078.67
//
Query:       MMETSP1174-20130828|21391_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.20s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|21392_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1045.21
//
Query:       MMETSP1174-20130828|21401_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.22s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 497.16
//
Query:       MMETSP1174-20130828|21403_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.24s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 257.38
//
Query:       MMETSP1174-20130828|21404_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.20s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 182.75
//
Query:       MMETSP1174-20130828|21406_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 179.37
//
Query:       MMETSP1174-20130828|21408_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 223.81
//
Query:       MMETSP1174-20130828|21409_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 152.30
//
Query:       MMETSP1174-20130828|21412_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-25   86.2   0.0    5.4e-14   50.0   0.0    2.0  2  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase


Domain annotation for each model (and alignments):
>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.3e-13     3e-09      69     240 ..       3     168 ..       1     177 [. 0.83
   2 !   50.0   0.0   1.3e-17   5.4e-14     251     303 ..     237     289 ..     224     291 .. 0.92

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 7.3e-13
    TIGR00745  69 aDlllvtvKayqteealakllpyigkntvvlllqNGlgneeklrellperkvllGvvthgaareepg..vvhhagegktkigklpgeekeealeelaellkeagle..aeltedilaalwkKllvNaaiNpltalldcknGelleneearelleslidEvvqvaraegveladdlv 240
                  a+l+lv++K   +   +  +l++  + + v+++qNGl++++++  l      ++ ++ ++++   +    ++++   k+++  +  +  e a   + + l++ag++  + +++ +laa+  KllvN+ +N+  al ++++   l ++   +l+ +  +E++  + a+g++++++++
  MMETSP1174-20130828|21412_1   3 AELVLVATKR-NANIKVRTYLEKYCPGAPVIMFQNGLDAAKDMGHLQ----AFQCIIAVNVVSNPAEgvFTRTTPMPKLTLDAG--T--EVAFPGITRRLSAAGFAvkTLTSGPFLAAQRGKLLVNM-VNAPNALSGKPTLYTLFDRTGLALIGATARECILCFDAAGYDVKPSVL 168
                  799*******.667778888888999****************98855....677777777777666632334444455555555..4..4689************966778899*************.9999**************************************998665 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 1.3e-17
    TIGR00745 251 taenssSMlqDllrgrrtEidainGavvklAeklgldaPvlellyallkalea 303
                  +a  +sSM++Dl+r+r++E+d++nGavv l++k+g+++P++++++  ++ +ea
  MMETSP1174-20130828|21412_1 237 DATAHSSMWEDLQRNRPSEVDYLNGAVVALGRKVGVSTPTNDAVLCAVHEVEA 289
                  56678****************************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1227.90
//
Query:       MMETSP1174-20130828|21413_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0084   13.9   0.3      0.052   11.4   0.2    2.2  2  TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
  ------ inclusion threshold ------
      0.019   11.9   0.0        0.4    7.5   0.0    2.4  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR02276  beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.19   3.8e+02       1      16 [.      38      53 ..      38      54 .. 0.86
   2 !   11.4   0.2   2.6e-05     0.052       1      18 [.      97     114 ..      97     120 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.19
    TIGR02276  1 PdGtkvYVtNsgSnsV 16
                 P+G   YV  + S++V
  MMETSP1174-20130828|21413_1 38 PSGEAAYVFCELSGDV 53
                 99999***98888888 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.6e-05
    TIGR02276   1 PdGtkvYVtNsgSnsVsV 18 
                  PdG++vYVt ++++ V+V
  MMETSP1174-20130828|21413_1  97 PDGRTVYVTTRTDGAVVV 114
                  9***************98 PP

>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.012        25      76     102 ..      22      48 ..       2      64 .. 0.73
   2 ?    7.5   0.0   0.00019       0.4      46     106 ..      93     161 ..      78     182 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.012
    TIGR03866  76 lkelpsGedPelfvlepdgkllyiane 102
                     l  G  P  ++l+p+g+  y+  e
  MMETSP1174-20130828|21413_1  22 HLGLERGSGPRHLALDPSGEAAYVFCE 48 
                  456777888888888888888888665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00019
    TIGR03866  46 itlskdgkllyvcasdsdavqvldaete.......evlkelps.GedPelfvlepdgkllyianeddal 106
                  i+ ++dg+++yv++  + av v+ ++ +       +  +++p  G  P    ++++ ++l +an+d ++
  MMETSP1174-20130828|21413_1  93 IVCAPDGRTVYVTTRTDGAVVVMTVDQSasrtyalTYAQSVPCeGVCPRHCHFDQSANVLRVANQDTQT 161
                  566677777777777777776665432200111112234555336666666677777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 758.94
//
Query:       MMETSP1174-20130828|21415_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|21422_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1174-20130828|21420_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 893.13
//
Query:       MMETSP1174-20130828|21419_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 944.46
//
Query:       MMETSP1174-20130828|21424_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 678.80
//
Query:       MMETSP1174-20130828|21417_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-24   82.6   1.0      2e-23   80.9   0.1    2.0  2  TIGR00550 nadA: quinolinate synthetase complex, A subunit


Domain annotation for each model (and alignments):
>> TIGR00550  nadA: quinolinate synthetase complex, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   4.9e-27     2e-23      11     250 ..      81     392 ..      72     402 .. 0.73
   2 ?   -0.6   0.0     0.031   1.3e+02     260     278 ..     448     464 ..     441     476 .. 0.78

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 4.9e-27
    TIGR00550  11 kklkkelnavilaHyYqkdeiqelAdetG.......DsLelakvae..ktd.adlivfcGvhFmaEtakiLnpe...kkvll....PdleaeCsladmldvee.vkklkelypdelv..vvYvnttAevkAka.....divvtssnAvkvvesldkd..kkkilfaPDknLgryvleqtlkdiilid..........................ekGaCivHekFktedleelkekyPdaei.lvHPEcekevvela........Daigstsqlleav..........eksda.ekliigtevglvnrlekese 250
                     + + n+ ++aH+Y + e+q +   +        DsL +   a    +  a  i   Gv+Fm+E++++         v l    Pd + +Csla++++     + l ++  de    vvY+nt+ ++kA+a      i++tssn v+ + ++ ++  + ++ ++PD  +g+      ++ + l d                          ++G+C+vH++F  + +++lk+ y + +   +H E + e+ +la          +gsts++l+++           +s++  ++++gte g+v+ + ++++
  MMETSP1174-20130828|21417_1  81 DDALAKANMGVVAHFYMDVELQGILSSLKsphvsvaDSLAMGDAAVgmVNAgATSIACLGVDFMSESVRATMDAlgaSSVPLyrmrPD-HIGCSLAESAEGAAySAWLSQAEQDENAlhVVYINTSLKTKAEAqarvpTITCTSSNVVQTILQASAQvpDVTVYYGPDTYMGENLRTLFQHAATLSDeeikstlhpghdqasirrllerlhvfQQGNCVVHHMFGSDVVQTLKDSYSETAFfTAHLEVPGEMFQLAlpaaaegrGVVGSTSNILNFIvaktktalasADSQKkLQFVLGTEAGMVTPIVRAVQ 392
                  55567789999************9887766888899*****877752144458899999*******9865432222234433122255.889******998874333455544443326******99999999889999********99887777763356899********95444444444444455666899******************************************9775268*****9999886444444334799******986332222111112223246999999999998876665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.031
    TIGR00550 260 alCeslamkritLekllea 278
                  a+C+   mk++tLe l+++
  MMETSP1174-20130828|21417_1 448 ATCPF--MKMNTLETLMDV 464
                  66777..*******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 2032.63
//
Query:       MMETSP1174-20130828|21428_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|21426_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 1358.02
//
Query:       MMETSP1174-20130828|21430_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 203.48
//
Query:       MMETSP1174-20130828|21432_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|21431_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1174-20130828|21437_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1174-20130828|21438_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1174-20130828|21440_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|21441_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|21436_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 535.72
//
Query:       MMETSP1174-20130828|21442_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-45  154.1   0.3      1e-43  147.7   0.2    2.5  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
    2.4e-07   28.6   0.0    0.00095   16.9   0.0    2.2  2  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
    1.4e-05   22.5   0.0    0.00016   19.1   0.0    2.0  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3


Domain annotation for each model (and alignments):
>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.2   7.4e-47     1e-43       7     227 ..      39     306 ..      35     310 .. 0.91

  Alignments for each domain:
  == domain 1    score: 147.7 bits;  conditional E-value: 7.4e-47
    TIGR00050   7 ivlvepktsgNvGsiARamknmGleeLilvnpkv..leeeayalaagakdilenakvvddldealddldlvvgTsarsralkkvlltPreladkllakkg....................kvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelreaklvqeek........................ledkeeatkedlelllekleelllslevipeh.kkrsvvkilrrllqRaklekeevalLkgilrk 227
                  ivlv +   +N+G++AR m n+G+ eL+lv+p++  l+++a+a + ga  +l +ak++++++ a +d++ v +T+ar r +++ +++Prela  ++  +                     ++a++FG E+sGLtNE+le +  lv++ t+++++slNl+qAv +i Ye r+a l+   +                          d+  a+k +++++l++le+ l+   + + +  k +v + +r l++R  l+++ev +L+gi+++
  MMETSP1174-20130828|21442_1  39 IVLVRTFLDQNIGAVARSMLNFGIAELRLVDPQCdwLSDDAMARSSGADAVLSGAKIFPNVSMATADVHSVYATTARFRDMTQLIISPRELARRIVIDSHdllvvdssldsptsslngksRSAILFGPERSGLTNEDLEGASALVQMSTNPNFASLNLAQAVTIIGYEYRQAYLASLIEskssgqesstgsqeegqeeayfhmRDDTMRASKGEVDAFLKRLETGLDDASFCTSDsMKTNVYRNIRTLFHRQLLTQREVSTLHGIITA 306
                  9*******************************************************************************************99887666667777788999999999999************************************************999877654445699999*****99999888875455999******************9999876515667899**********************865 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00013      0.18       4      47 ..      39      83 ..      37     102 .. 0.86
   2 !   16.9   0.0     7e-07   0.00095      86     146 ..     150     209 ..     133     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00013
    TIGR00185  4 ivlyePeiPnntGnivrtCaatk.aelhlikPlGfalddkrlkra 47
                 ivl++  + +n G ++r+  +++ ael l++P    l d  + r+
  MMETSP1174-20130828|21442_1 39 IVLVRTFLDQNIGAVARSMLNFGiAELRLVDPQCDWLSDDAMARS 83
                 8999999***************9468******9988887777775 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 7e-07
    TIGR00185  86 dhisvkykdtdylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvlyealr 146
                  + +s++ k++  ++fG+e +Gl ++ l+   +  +++    +  slnl++av+++ ye+ +
  MMETSP1174-20130828|21442_1 150 PTSSLNGKSRSAILFGPERSGLTNEDLEGA-SALVQMSTNPNFASLNLAQAVTIIGYEYRQ 209
                  5667778888899**********9998887.7899999999*****************964 PP

>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.2e-07   0.00016      84     236 ..      28     207 ..      12     210 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.2e-07
    TIGR00186  84 vktakskkapllliLdeitDphNlGailRtAealgvdgvvlkkrrsapltstvvktssGalellplvrv.tnlsetltklkesgfwivgtsleaeetkyekkktk.............................klaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgillfei 236
                  ++ +++++ap+++++    D +N+Ga+ R+   +g++ + l   ++  l   ++  ssGa   l  +++  n+s +  ++    ++  ++     ++   +  +                              + a++ G E  G+ +   + +  l+++ ++ ++ SLN+  A+ i+ +e 
  MMETSP1174-20130828|21442_1  28 LESVDHEQAPVIVLVRTFLD-QNIGAVARSMLNFGIAELRLVDPQCDWLSDDAMARSSGADAVLSGAKIfPNVSMATADVH--SVYATTARFRDMTQLIISPRELarrividshdllvvdssldsptsslngksRSAILFGPERSGLTNEDLEGASALVQMSTNPNFASLNLAQAVTIIGYEY 207
                  45666777899999999999.6**************************************988887776245554444443..33333333333333222222224567788888889***********************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1083.70
//
Query:       MMETSP1174-20130828|21444_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-13   47.5   0.0    5.3e-13   46.9   0.0    1.3  1  TIGR00165 S18: ribosomal protein S18


Domain annotation for each model (and alignments):
>> TIGR00165  S18: ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-16   5.3e-13      14      69 ..     128     183 ..     113     184 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.3e-16
    TIGR00165  14 kikeiDYkDlellkkfisergKilPrRiTGtsakyqrklakaiKRaRylaLlPfvk 69 
                    +   +  +++l   is+ g i PrR TG +ak qrk  k iK aR+l ++Pfv+
  MMETSP1174-20130828|21444_1 128 DLDDLHFTNIAMLEYLISPTGMIRPRRHTGLCAKCQRKASKTIKLARQLGMIPFVQ 183
                  34555677899********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 866.18
//
Query:       MMETSP1174-20130828|21446_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 138.27
//
Query:       MMETSP1174-20130828|21447_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 718.61
//
Query:       MMETSP1174-20130828|21449_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 386.86
//
Query:       MMETSP1174-20130828|21450_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|21453_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.45
# Mc/sec: 152.52
//
Query:       MMETSP1174-20130828|21452_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1352.89
//
Query:       MMETSP1174-20130828|21454_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-34  115.6  12.4    9.3e-34  115.1   8.6    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    2.8e-16   57.5  15.4    3.8e-16   57.1  10.7    1.3  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
     0.0005   17.6   4.3     0.0005   17.6   3.0    2.9  3  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   8.6   6.8e-37   9.3e-34      19     296 ..      26     296 ..       7     304 .. 0.80

  Alignments for each domain:
  == domain 1    score: 115.1 bits;  conditional E-value: 6.8e-37
    TIGR00817  19 ivnkkll.klfhypvlktlvslavgvllells...wssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvka 296
                   +nk +l +l    ++ +++++    +l  ++        +k  + +++++  l+ v+ ++    v     l+  + Sft  ik+  p+++vv   ++l+      +  sL+pi++G  l s+t+ sf  +gf+ am++n +   +n+fsK +++  sl+ ++l  + s ++  + +p+ ++  +  ++       +  ++ ++l   +lvaa   +Hl    a+ ++++vsp+t sv+N+ KR   I  S+l f++ +++ + +G+++ i+Gvf Y+k ++
  MMETSP1174-20130828|21454_1  26 FLNKTILtELGSGLYILSMIQMTTTAVLGAVKvymPGGVGTKLRQADSHFWRNLFIVGALRGATVVLGLIGLKHLSPSFTEAIKSSAPLITVVFAWLILNDRTAPIVLASLVPIMFGLLLTSMTDISFDQIGFIGAMACNCIDCVQNVFSKSLMK--SLSPVQLQFMTSATAAAMQLPFMIAFHLRDIID------NPPSGRIFLL--LLVAAV-AYHLQSVTAYCTMDLVSPVTMSVANCAKRGLLIILSVLYFGNEVHMSTWIGMVMIILGVFWYNKART 296
                  5664443144555566677777665555555533222233456677888999999999999999999999999999******************999988776658888**********************************************..999999999999888888888888877776666......3455666665..666666.****99*********************************************************9865 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1  10.7   2.8e-19   3.8e-16      40     263 ..      69     288 ..      23     289 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 2.8e-19
    TIGR00950  40 r.nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnlqalpatslqwlallyLgligtllayflyn....kglkevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                  r  +   + +l+++gal  g+++vl ++  k l+ +++  + ++aPl+++++ +l+ + r+   +l+++v  + G  ll s + +s++ +G++ +++ +    +  v++k l+k  ++ +lqf    +  ++a+ l  + ++  ++   +p  ++ +     L l+ +++ay l +      +  v+++++s+ ++++    ++L++l++g++++++++ig+++i+++v
  MMETSP1174-20130828|21454_1  69 RqADSHFWRNLFIVGALR-GATVVLGLIGLKHLSPSFTEAIKSSAPLITVVFAWLILNDRTAPIVLASLVPIMFG-LLLTSMTDISFDQIGFIGAMACNCIDCVQNVFSKSLMKSLSPVQLQFMT--SATAAAMQLPFMIAFHLRDIIDNPPSGRIF-----LLLLVAAVAYHLQSvtayCTMDLVSPVTMSVANCAKRGLLIILSVLYFGNEVHMSTWIGMVMIILGV 288
                  246778899999999997.66778888999999999**9************************************.9999999*********************************999999986..666777777777778888998998666555.....3333344455444311114699*******************************************98 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.066        90     178     214 ..       6      42 ..       2      60 .. 0.71
   2 !    5.3   1.8    0.0021       2.9      61     136 ..      74     149 ..      42     167 .. 0.80
   3 !   17.6   3.0   3.6e-07    0.0005      20     135 ..     179     293 ..     166     306 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.066
    TIGR03340 178 lylaiqflaaglvllllylkrrkraiveearqilasa 214
                  + l++ f+  ++ l +l+  + +++i++e  + l+++
  MMETSP1174-20130828|21454_1   6 QTLGVSFWMGSWYLCSLTTLFLNKTILTELGSGLYIL 42 
                  5689999999999999999999988887655544444 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0021
    TIGR03340  61 elw.lllivsavaqvvYllglaqAYehadvglvYPlaRslPvlvaiaatlllgeeLsalaWlGillivlGllvlgls 136
                  ++w  l iv a+     +lgl+   +h   +++  +  s P++ ++ a+l+l++   ++  + ++ i+ Gll+ +++
  MMETSP1174-20130828|21454_1  74 HFWrNLFIVGALRGATVVLGLIG-LKHLSPSFTEAIKSSAPLITVVFAWLILNDRTAPIVLASLVPIMFGLLLTSMT 149
                  55524667777777777777765.4555558888999999*************************9****9997766 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 3.6e-07
    TIGR03340  20 akshadkesdfllvallaasvLltpyvl.welakvgWsaleaelwlllivsavaqvvYllglaqAYehadvglvYPlaRsl.....PvlvaiaatlllgeeLsalaWlGillivlGllvlgl 135
                   ks ++ +++f+  a+ a   +  p+++ ++l  +    +  +++lll+v+ava   Y l   +AY   d+  v P+  s+       l++i + l +g+e++   W+G+++i+lG++   +
  MMETSP1174-20130828|21454_1 179 MKSLSPVQLQFMTSATAA--AMQLPFMIaFHLRDIIDNPPSGRIFLLLLVAAVA---YHLQSVTAYCTMDL--VSPVTMSVancakRGLLIILSVLYFGNEVHMSTWIGMVMIILGVFWYNK 293
                  455555556666665555..3444655439998888887888899999988875...99999999998885..55555544211143477888899********************986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1147.29
//
Query:       MMETSP1174-20130828|21458_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.73
# Mc/sec: 157.30
//
Query:       MMETSP1174-20130828|21457_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 458.82
//
Query:       MMETSP1174-20130828|21459_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 810.79
//
Query:       MMETSP1174-20130828|21460_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|21462_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 906.33
//
Query:       MMETSP1174-20130828|21466_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|21469_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 543.19
//
Query:       MMETSP1174-20130828|21472_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|21470_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|21467_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 1882.42
//
Query:       MMETSP1174-20130828|21474_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   71.7   0.0      7e-20   69.2   0.0    1.8  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    1.7e-17   61.5   0.0    3.4e-17   60.5   0.0    1.5  2  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
     0.0059   13.7   0.0      0.009   13.1   0.0    1.2  1  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   5.1e-23     7e-20     139     223 ..      50     131 ..      33     144 .. 0.88
   2 ?    0.1   0.0     0.062        85     253     264 .]     193     204 ..     185     204 .. 0.81

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 5.1e-23
    TIGR00446 139 lkfDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkkgGvlvYstCsleveeneevvdyllrkrkdvve 223
                    fD++LlD PCs  G+    ++   +++  d+++    q+ Ll +a+ +l+kgGvlvYstC++++ ene +v ++l+++++  +
  MMETSP1174-20130828|21474_1  50 GSFDKVLLDGPCSALGL---RPRLRMDVTAGDLTHACDEQRRLLRSAVALLRKGGVLVYSTCTVNPAENESMVAHALETYPELSL 131
                  45*************97...4667789****************************************************998765 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.062
    TIGR00446 253 dveGFFvaklrk 264
                  d  GFFvak+ k
  MMETSP1174-20130828|21474_1 193 DSIGFFVAKFIK 204
                  667******966 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   2.5e-20   3.4e-17     312     395 ..      44     127 ..      16     149 .. 0.83
   2 ?   -1.9   0.0      0.21   2.9e+02     418     435 ..     188     204 ..     155     205 .. 0.61

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 2.5e-20
    TIGR00563 312 e...evekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiLkaiaplvkkgGtLvYstCtllpeeneeqikaFlaele 395
                  +   + + fD++LlD PCsalG    +P l+   +  d ++  + q+++L+    l++kgG+LvYstCt++p+ene  +   l+ ++
  MMETSP1174-20130828|21474_1  44 PsgfDAGSFDKVLLDGPCSALGL---RPRLRMDVTAGDLTHACDEQRRLLRSAVALLRKGGVLVYSTCTVNPAENESMVAHALETYP 127
                  1334778***************7...799***********************************************99876655555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.21
    TIGR00563 418 ilPhaeegDGFfiaklkk 435
                   lP   ++ GFf+ak++k
  MMETSP1174-20130828|21474_1 188 ALPA-MDSIGFFVAKFIK 204
                  3444.4556999999988 PP

>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.6e-06     0.009       5      31 ..      84     110 ..      80     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.6e-06
    TIGR00057   5 npsqrviekavkllkkgeivvyPTdtv 31 
                  ++++r++++av+ll+kg+++vy T tv
  MMETSP1174-20130828|21474_1  84 DEQRRLLRSAVALLRKGGVLVYSTCTV 110
                  67899*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 755.27
//
Query:       MMETSP1174-20130828|21477_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1009.08
//
Query:       MMETSP1174-20130828|21482_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1520.87
//
Query:       MMETSP1174-20130828|21488_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|21486_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 2156.90
//
Query:       MMETSP1174-20130828|21495_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|21496_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.54
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|21497_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1516.09
//
Query:       MMETSP1174-20130828|21500_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 763.24
//
Query:       MMETSP1174-20130828|21498_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 1560.11
//
Query:       MMETSP1174-20130828|21503_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1174-20130828|21505_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|21506_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1174-20130828|21508_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|21507_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 842.48
//
Query:       MMETSP1174-20130828|21511_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   13.0   0.1       0.02   12.9   0.1    1.1  1  TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region


Domain annotation for each model (and alignments):
>> TIGR01714  phage_rep_org_N: phage replisome organizer, putative, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.9e-06      0.02      38      78 ..      26      65 ..       6      66 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.9e-06
    TIGR01714 38 lndkGliylnelvpynaemlAtlinrdvesirvalqilesl 78
                  +++G ++ + +v ++++m A   n d e ++  lq++e++
  MMETSP1174-20130828|21511_1 26 NRQDGNLLHDANVSNLEDM-ARTSNTDAERVQQNLQTMEEK 65
                 4689***********9997.8899*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|21513_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-14   50.1   3.6      5e-14   50.0   2.5    1.0  1  TIGR00886 2A0108: nitrite transporter


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   2.5   1.2e-17     5e-14     154     313 ..       7     162 ..       1     168 [] 0.88

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 1.2e-17
    TIGR00886 154 lkgagqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvksallslekealaevlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglv 313
                  +  +gq+   awr  l lv+al l+ +a+++ +++ d+p++++++++l ++s ++        + +   ++ +  +l ++Y+ + G+el++++il  ++ d+f +s   a  +a+ +++l+l  R lG  ls    +     +r ++ ++ll++ +a+l+++g +
  MMETSP1174-20130828|21513_1   7 MVSSGQSESAAWRQTL-LVTALFLVGTAVFIHFFATDFPYKDNVGKRLGRNSVSS--------SSKGFSTDIAACLLGIQYAGSLGVELTLNNILVSYFVDTFRMSLFYASLIAFCFGALNLQGRMLGHKLSGMAHEragirGRLVVKMVLLLLEAALLIIFGRM 162
                  4456899999******.********************************883322........233445778999*********************************************************999888999999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 583.53
//
Query:       MMETSP1174-20130828|21515_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 385.27
//
Query:       MMETSP1174-20130828|21519_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 347.57
//
Query:       MMETSP1174-20130828|21516_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-95  316.4   0.0    6.1e-95  316.2   0.0    1.0  1  TIGR00131 gal_kin: galactokinase
    1.7e-22   78.1   0.0    2.2e-10   38.3   0.2    2.1  2  TIGR00549 mevalon_kin: mevalonate kinase
     0.0037   14.5   0.0     0.0064   13.7   0.0    1.3  1  TIGR01920 Shik_kin_archae: shikimate kinase
  ------ inclusion threshold ------
      0.019   11.7   0.0      0.038   10.7   0.0    1.4  1  TIGR00191 thrB: homoserine kinase


Domain annotation for each model (and alignments):
>> TIGR00131  gal_kin: galactokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.2   0.0     6e-98   6.1e-95       3     385 ..      43     434 ..      41     437 .. 0.89

  Alignments for each domain:
  == domain 1    score: 316.2 bits;  conditional E-value: 6e-98
    TIGR00131   3 evkkiFasaykekpdlvvraPGRvnliGehiDYndgsvlPlaidvdtlvav......kerddknvsitlanadnklaerkldlpldksev..sdWanYvkgvlkvlqeRfnsvpl.GldivisgdvPtgaGLsssaalevavaavlknlgkleldskeillriqkveehfvGvncGgmDqlasvlGeedhallvefrkLkatpvklpqleialviantnvksnlapseYnlRrqeveeaakvlakk...sekgaLrDvkeeefaryearltkllqlvekqRakhvvsenlRvlkavkllkdedlkelGkLmnesqasldddyeitvpeidelvesialvnG.siGsRltGaGfGGCtvalvpnenvekvrkalaekYekktdlklefavivskeal 385
                  ++k++F  a++e+p++ ++aPGRvnliGeh+DY++g+vlPla++  t+v +      +  dd   si+++ +d++++ +++d+           WanYvkgv+k+     +   +  +   + +dvP gaGLsssaalev  a++l+ +  +  + +e++lr q +e +f  + cG+mDq++s+ G  + +l++++r+   t++++   +  +++ n++vk+ l +seY lR+ ++++a k+la+k      ++LrD +        +    l+ +  k Ra+hv+sen Rvl av +l++ dl  +G+Lm +s++sl+dd+e++ +e+d lv ++      + GsR+tG+GfGGCtv+lv+ + ve++   l+e+Y  +t++  + +  ++++++
  MMETSP1174-20130828|21516_1  43 KAKSTFLAAFGEEPTIAAQAPGRVNLIGEHTDYTGGFVLPLALEKRTVVVGigkivpASEDDSLCSIVSTGLDDEINVVHFDADPAVLVPgdPFWANYVKGVVKMYSADLPVGMKfSFSAAFASDVPLGAGLSSSAALEVSTATLLETILGTAPSPEEKALRCQGAEHEFCDMPCGIMDQFISARGVAQSLLMIDCRSNVGTTIPFTAEDYVVLVTNSKVKHALSDSEYPLRVAQCQTATKALAAKfgsETVTSLRDATLGMLS---EVEGDLDAVSFK-RARHVISENRRVLAAVAALEQSDLSAVGQLMVQSHESLRDDFEVSAVELDVLVDLAVSFGDaVLGSRMTGGGFGGCTVTLVRADAVEALTSYLTEEYLRVTGVTPDIFATKPGPGA 434
                  57899***************************************9999764333333678*********************9865443333367**********9986655444447888899************************9999999999****************************************888889999999************************************9664455677777777766...888888888887.**************************************************8887655443369***************************************99888877777775 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.1e-13   3.2e-10       1     148 [.      62     228 ..      62     265 .. 0.78
   2 !   38.3   0.2   2.2e-13   2.2e-10     179     276 .]     298     398 ..     246     398 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 3.1e-13
    TIGR00549   1 apgKviLfGEHaVVYgepAiaaaiealttvtvieeskeislieselgrkslakvsqelsklle...................syiaavlskleekkeaa....lkveieseipigaGLGSSAavavaliaalaalfgselskeelaklaneaEkivhGkpSgi.Dtavvtyg 148
                  apg v L+GEH    g  ++ +a+e++t+v+ i   k + ++e+   ++    vs+ l+ +++                   +y+  v++++++  +      ++    s +p gaGL+SSAa+ v++++ l  ++g   s ee a   + aE+ +   p gi D+++++ g
  MMETSP1174-20130828|21516_1  62 APGRVNLIGEHTDYTGGFVLPLALEKRTVVVGIG--KIVPASED---DSLCSIVSTGLDDEINvvhfdadpavlvpgdpfwaNYVKGVVKMYSADLPVGmkfsFSAAFASDVPLGAGLSSSAALEVSTATLLETILGTAPSPEEKALRCQGAEHEFCDMPCGImDQFISARG 228
                  8****************************99998..22222222...222222223333333333445667799********************999876766777889*********************************************999999985488888776 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 2.2e-13
    TIGR00549 179 srsTkelVakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLk.slgvShpkleqlvelarkag..algaKlTGaGgGGcvial 276
                     T  ++++V+  l++      +++   +  v +a aale+ d +++g+lm + ++ L+ ++ vS  +l+ lv la++ g  +lg+ +TG+G GGc+++l
  MMETSP1174-20130828|21516_1 298 RDATLGMLSEVEGDLDAVSFKRARHVISENRRVLAAVAALEQSDLSAVGQLMVQSHESLRdDFEVSAVELDVLVDLAVSFGdaVLGSRMTGGGFGGCTVTL 398
                  56677777777777777666666666677778999************************637*************9998774479**************97 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.3e-06    0.0064      64      97 ..     154     187 ..     131     206 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.3e-06
    TIGR01920  64 lgikegleveveseiPagsGLksSsAlvnAlvla 97 
                  +g+k++ ++   s++P g+GL+sS+Al ++++  
  MMETSP1174-20130828|21516_1 154 VGMKFSFSAAFASDVPLGAGLSSSAALEVSTATL 187
                  57888899999***************98887654 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.7e-05     0.038      81     118 ..     160     197 ..     134     215 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.7e-05
    TIGR00191  81 vkltvekeiplgrGLGSSaaaivaaviaanelaglkls 118
                  +     +++plg GL SSaa  v+++++++ ++g+  s
  MMETSP1174-20130828|21516_1 160 FSAAFASDVPLGAGLSSSAALEVSTATLLETILGTAPS 197
                  44556789******************999998887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1382.74
//
Query:       MMETSP1174-20130828|21522_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.41
# Mc/sec: 218.91
//
Query:       MMETSP1174-20130828|21520_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1174-20130828|21525_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 945.21
//
Query:       MMETSP1174-20130828|21527_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 601.87
//
Query:       MMETSP1174-20130828|21526_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   18.8   2.0    0.00015   18.8   1.4    2.2  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00016   18.2   2.8    0.00016   18.2   2.0    1.8  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.4   7.2e-08   0.00015      23     127 ..      79     183 ..      54     216 .. 0.80
   2 ?   -2.5   2.8      0.21   4.3e+02      53     172 ..     346     465 ..     302     486 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.2e-08
    TIGR00881  23 eeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss..slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnis 127
                  e++g +++  G  +s f+ia  i+  ++g+  D    r ++a+ L+l+ +++++ ++ +  ++ +l++ ++l G   ++   + +  + + +s+ er +  +i + +
  MMETSP1174-20130828|21526_1  79 ESLGGDEEYYGTCVSIFAIARVICMGPFGIWVDNRPFREIFATSLVLSMVASVIYAMGPtvGIHALLVSRFLLGGTSAVSVATQA-FVSEHTSKAERTKYTSINS-A 183
                  5555566667999*****************************************9999866788899999****99999888877.9999999999999888843.3 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.21
    TIGR00881  53 vsDrvsarvflaigLilvaivnlflgfss.slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllr 172
                  +sDrv  + f  + ++l  +  +   + + +l++ + + +++G++     p++  l+ k++ + + G  +a++ +   ++ al   lv +a    l   ++    g++ +  s +ll l r
  MMETSP1174-20130828|21526_1 346 ISDRVLIVFFEGCTILLLLALLIPSKMTTlALPMPLFVGLVCGILAVDPGPVVVGLYSKLIGPGNAGLYFAVLQSNGAIARALFGQLVGFAYGS-LGPIWLWSTCGLLVLFSSAVLLTLWR 465
                  4666666666566655554444433333344444455556788888888888888999999999999999999999999999999877777654.45567777777777777777777666 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.0   7.7e-08   0.00016      78     218 ..      88     241 ..      83     248 .. 0.77
   2 ?   -6.6   4.0         2   4.1e+03      99     205 ..     342     450 ..     317     467 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7.7e-08
    TIGR00894  78 qGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsa....vlsGaqlGtlivlpisGlicesd...........lgWpavfYifgivgtvvlilwlvl 218
                   G   s +  + +i   p+G+  ++ + + +++ +l+ls+v s++  +  +vg+  ++v R+l G ++++vs a+++++       ER++ +s+    ++s ++ G++  l i  l  e +             + +v Y   ++  +vli +l +
  MMETSP1174-20130828|21526_1  88 YGTCVSIFAIARVICMGPFGIWVDNRPFREIFATSLVLSMVASVIYAMGPTVGIHALLVSRFLLG-GTSAVSVATQAFVSEHTSKAERTKYTSInsaiITSLSVCGPVFNLVIVAL-PEAHyhlgkqfplefTDYTWVGYFLCACQGIVLIGFLHF 241
                  578889999999*****************************************************.5677899999**************99862222456666777766666543.222233555566666666677666666666666666555 PP

  == domain 2    score: -6.6 bits;  conditional E-value: 2
    TIGR00894  99 lakkygtkkviga..alllssvlslliPiaa.avgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifg 205
                  l+ k + + +i++  + ++  +l+lliP    + +  + +++ ++ G+      p    l+ k i P + +   ++  s   +  +++  + G+  +s lg  +++  +g
  MMETSP1174-20130828|21526_1 342 LSMKISDRVLIVFfeGCTILLLLALLIPSKMtTLALPMPLFVGLVCGILAVDPGPVVVGLYSKLIGPGNAGLYFAVLQSNGAIARALFGQLVGFAYGS-LGPIWLWSTCG 450
                  55666777777663356677778888986540344455677778888888777888888889999888888888888887777777777777777766.56555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1822.88
//
Query:       MMETSP1174-20130828|21530_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|21531_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 559.63
//
Query:       MMETSP1174-20130828|21532_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1348.17
//
Query:       MMETSP1174-20130828|21533_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1179.4   0.2          0 1179.2   0.2    1.0  1  TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR00178  monomer_idh: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1179.2   0.2         0         0       5     741 ..      56     794 ..      52     795 .] 0.99

  Alignments for each domain:
  == domain 1    score: 1179.2 bits;  conditional E-value: 0
    TIGR00178   5 kakiiytltdeapllatysllpivkafaasaGievetrdislagrilaefpeylteeqkvddalaelGelaktpeaniiklpnisasvpqlkaaikelqdkGydlpdypeepktdeekdikaryakikGsavnpvlreGnsdrraplavkeyarkhphkmGewsadskshvahmdagdfyaseksvlldaaeevkieli.akdGketvlkaklklldgevidssvlskkalvefleeeiedakeegvllslhlkatmmkvsdpivfGhvvrvfykdvfakhaelleqlGldvenGladlyakieslpaakkeeieadlekvyeerpelamvdsdkGitnlhvpsdvivdasmpamirasGkmygkdgklkdtkavipdssyagvyqaviedckknGafdpttmGtvpnvGlmaqkaeeyGshdktfeieadGvvrvvd.ssGevlleeeveagdiwrmcqvkdapiqdwvklavtrarlsgtpavfwldperahdeelikkvekylkdhdteGldiqilspvkatrfslerirrGedtisvtGnvlrdyltdlfpilelGtsakmlsvvplmaGGGlfetGaGGsapkhvqqleeenhlrwdslGeflalaaslehvavktgnekakvladtldaatgklldeekspsrkvGeldnrgskfylakywaqelaaqtedkelaasfasvaealtkneekivaelaavqGeavdlgGyyapdtdlttkvlrpsatfnailea 741
                  + kiiyt tdeap+latysllpiv a+ + + + +e +dis+a+ri+++fp+yl   q+  d+la lG+l+ktpeaniiklpn+sas+pql+ ai elq+ Gy++pd+p++p+++ee+++++ry +++GsavnpvlreGnsdrr  + vk +ar++ph++  w  +skshv+hmd++df+++e+s ++ ++ +v+i+++ a  G +tvlk+++kll+gevid+s +s k l+ef+++e++dak++gvl+slhlkatmmk+sdpi+fGh+v+vf+  +++kh+e+l +lG++ +nGl+dl  ki slp+a++ eiead+ ++ye++p lamvds+kGitnlh+p dvi+dasmp ++r++Gkm++k ++l+dtk+ ipd++yag+y++vie+ k++Gafd + mG+v nvGlmaqkaeeyGshdktfeie  G+v+v+d ++G vl+ +eve+gdiwrmcq kd+piqdwvklav+rar +g pa+fwl+ +rahd++li+kve yl+ hdt+Gldi+il p  a+r +ler ++G+dtisvtGnvlrdyltdlfpilelGtsakmls+vpl+aGGGlfetGaGGsapkhvqq+e+e+hlrwdslGeflala sle++a kt+n+ a+vladtl++a+  ll ++kspsrkv e+dnrgs+fyla+yw+q laaq+   ela +f+s+ae lt+ne++i+ael+++qG++ dlgGyy+p+  +++k++rps+ +n+i+++
  MMETSP1174-20130828|21533_1  56 SGKIIYTFTDEAPALATYSLLPIVSAYLTKCNVTIEKKDISVASRIISNFPDYLQSGQQEVDHLAMLGDLSKTPEANIIKLPNVSASIPQLQEAIEELQSLGYAVPDFPADPQNNEERKVRERYGAVLGSAVNPVLREGNSDRRVAAPVKAFARENPHRLKPWDPNSKSHVSHMDDNDFFSAEQSHVMPTSGDVQIKHVdADTGLVTVLKTSTKLLAGEVIDTSKMSVKHLREFYAKEMADAKDKGVLFSLHLKATMMKISDPIMFGHAVSVFFDSALTKHSEVLAELGVNLKNGLGDLEKKITSLPEAQRAEIEADIAACYENGPALAMVDSAKGITNLHSPNDVIIDASMPPAVRDGGKMWNKADELEDTKMTIPDRCYAGIYNEVIEFSKTHGAFDVSKMGSVSNVGLMAQKAEEYGSHDKTFEIERSGTVQVIDkKTGSVLMSHEVEEGDIWRMCQTKDSPIQDWVKLAVSRARSTGDPALFWLNGDRAHDRNLIAKVEDYLALHDTQGLDIRILAPEAAMRETLERTMNGDDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFEKEGHLRWDSLGEFLALAVSLEDLASKTNNHSARVLADTLNEAISELLSKNKSPSRKVHEIDNRGSHFYLAMYWSQRLAAQSASPELAGHFTSIAEQLTSNEDSIMAELNNAQGSPQDLGGYYFPNPAKAEKAMRPSQILNDIINS 794
                  579****************************************************************************************************************************************************************************************************455699*****************************************************************************************************************************************************************************************************************************************889*******************************************************************************************************************************************************************************************************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.48
# Mc/sec: 2186.07
//
Query:       MMETSP1174-20130828|21537_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 912.28
//
Query:       MMETSP1174-20130828|21538_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0038   12.8  22.1     0.0043   12.6  15.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0065   14.3   1.4     0.0081   13.9   0.6    1.4  1  TIGR01874 cas_cas5a: CRISPR-associated protein Cas5, subtype I-A/APERN
       0.01   11.4  23.2       0.01   11.3  16.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.052    9.6  14.7       0.07    9.1  10.2    1.1  1  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
       0.19   10.1  17.7       0.52    8.7   3.3    2.4  2  TIGR01147 V_ATP_synt_G: V-type ATPase, G subunit
       0.41    8.6  14.6       0.13   10.2   0.5    3.1  3  TIGR00293 TIGR00293: prefoldin, alpha subunit
       0.44    7.5   7.9       0.69    6.9   5.5    1.3  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.48    5.9  13.8       0.54    5.8   9.5    1.0  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
        1.4    5.9  10.1       0.48    7.4   4.9    1.8  1  TIGR01478 STEVOR: variant surface antigen, stevor family
        5.9    3.3  14.4        7.6    2.9  10.0    1.2  1  TIGR02231 TIGR02231: conserved hypothetical protein
        7.7    3.1  14.2         10    2.7   9.8    1.1  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6  15.3   1.1e-05    0.0043     745     880 ..       6     142 ..       1     152 [. 0.64

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.1e-05
    TIGR02168 745 eqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaale.keleeleeqieeleeeiesleaeieeleeeleeleeeleel 880
                     e+  +  ++ele+l+ e+ e +++ +++e+ l ++e++ +e+++++++  e++ a +e+l++    ++e+++++++++e  e+ ++e+a+ + ++++ +++++ e+++e+e++ a+++  +++++ l+e+le+ 
  MMETSP1174-20130828|21538_1   6 ADREAAQRLVKAELEKLRLEKDEVDKMKKQLEDDLLACENKHAEEKSNLNDELEAMRAVKEQLDKGGGSHNETHDTIEKLKELHEKEKREVADGHmQNMDVMRKEHMEAQKELEDMVARMAGERDAMNSLQEKLEKE 142
                  44445555566666677777777777777777777777777777777777777777777777777777777777777777766666666666543155666666677777777777777777777777777776654 PP

>> TIGR01874  cas_cas5a: CRISPR-associated protein Cas5, subtype I-A/APERN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6   2.2e-05    0.0081      51     126 ..      50     130 ..      36     141 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.2e-05
    TIGR01874  51 eesalkkveklvkkaadvsapg....vkfevvlrrvrkvleenrklereelkeksdallreyiyaaekvvlvvvar.aeee 126
                  e+s l+   ++++++++   +g     ++ + + +++ + e++++++ +   +  d++++e + a+ ++  +v +  +e +
  MMETSP1174-20130828|21538_1  50 EKSNLNDELEAMRAVKEQLDKGggshNETHDTIEKLKELHEKEKREVADGHMQNMDVMRKEHMEAQKELEDMVARMaGERD 130
                  34445555566666655555555777899*************************************999999887543333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  16.1   2.7e-05      0.01     336     469 ..       9     143 ..       1     153 [] 0.62

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
    TIGR02169 336 keeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelk.aelerieekiaeleeeleelaeeikkaeqkleqlkedlekae 469
                  ++  + ++ e+e+ + e++++ +  k+l++ l + +++ +e++ + +   e++ ++ke+l+k    +ne + ++++l+e  ++ + e+a+ + +++  +++++ e ++ele++ ++++ ++  +++l+e+lek++
  MMETSP1174-20130828|21538_1   9 EAAQRLVKAELEKLRLEKDEVDKMKKQLEDDLLACENKHAEEKSNLNDELEAMRAVKEQLDKGGGSHNETHDTIEKLKELHEKEKREVADGHmQNMDVMRKEHMEAQKELEDMVARMAGERDAMNSLQEKLEKEK 143
                  444444566666677777777777777777776666666666666666666777777777777777777777777777766666666666441345566666677777777777777777777777777766665 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  10.2   0.00019      0.07     208     343 ..       9     142 ..       6     149 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00019
    TIGR03007 208 eaeeeLeearlelkea.kaqrdalkrqlageepvllaeesvasseldsriealekqLdeLrlrYtdkhPdviavkreiaeLeerkeeele...geksgseeessanpvyqqlqielaeaeaeiaslearvaelearierl 343
                  ea+++L +a+le+  + k ++d +k+ql+++    + +++  +s+l++++ea+++  ++L      +h +   + +++ eL+e++++e++   +++ +  +++ +     + q el+++ a++a  +   ++l++++e++
  MMETSP1174-20130828|21538_1   9 EAAQRLVKAELEKLRLeKDEVDKMKKQLEDDLLACENKHAEEKSNLNDELEAMRAVKEQLDK-GGGSHNETHDTIEKLKELHEKEKREVAdghMQNMDVMRKEHM-----EAQKELEDMVARMAGERDAMNSLQEKLEKE 142
                  678899999999877615689*********999999999999999****9999876666553.344554444444444455555555544221222222222222.....345566666666666666666666666555 PP

>> TIGR01147  V_ATP_synt_G: V-type ATPase, G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.3    0.0014      0.52      40      75 ..      25      60 ..       4      72 .. 0.73
   2 ?    6.7   4.4    0.0057       2.1      27      94 ..      65     131 ..      60     141 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0014
    TIGR01147 40 AqkevekYklqkekefkefeakalggkeeveekiea 75
                  ++ev+k k+q e ++ + e+k+++ k ++++++ea
  MMETSP1174-20130828|21538_1 25 EKDEVDKMKKQLEDDLLACENKHAEEKSNLNDELEA 60
                 3789*************************9999876 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0057
    TIGR01147  27 krkakrlkqAkeeAqkevekYklqkekefkefeakalggkeeveekieaeteekiaelkkaveknkee 94 
                  k + ++    ++e ++ +ek k  +eke +e    +++   +v +k + e++++++++   ++ ++++
  MMETSP1174-20130828|21538_1  65 KEQLDKGGGSHNETHDTIEKLKELHEKEKREVADGHMQNM-DVMRKEHMEAQKELEDMVARMAGERDA 131
                  56666666788999*****************999999976.5666778999******99999999987 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.7     0.017       6.4      17      42 ..      14      39 ..       4      48 .. 0.56
   2 ?   10.2   0.5   0.00036      0.13       5      48 ..      48      92 ..      44      99 .. 0.88
   3 ?    1.8   0.5      0.14        51      94     122 ..     110     138 ..      95     143 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.017
    TIGR00293 17 alqaeiaalraliaeleeaietlesl 42
                 +++ae+++lr  + e++++++ le+ 
  MMETSP1174-20130828|21538_1 14 LVKAELEKLRLEKDEVDKMKKQLEDD 39
                 34556666666666666666666654 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00036
    TIGR00293  5 aaelqqlqeevealqaeiaalraliaeleeaietleslkka.egk 48
                 a+e+ +l+ e+ea++a  ++l++   + +e+ +t+e+lk+  e++
  MMETSP1174-20130828|21538_1 48 AEEKSNLNDELEAMRAVKEQLDKGGGSHNETHDTIEKLKELhEKE 92
                 68999**********************************996544 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.14
    TIGR00293  94 kieelekaieklqeelqelaseaqeieqe 122
                  +  e +k++e++ + ++  ++ +++++++
  MMETSP1174-20130828|21538_1 110 EHMEAQKELEDMVARMAGERDAMNSLQEK 138
                  33333344444444444444444444444 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.5    0.0018      0.69     104     220 ..      19     129 ..       3     152 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0018
    TIGR03752 104 qqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdregkksapskesfptsfdnalkrkkkaleavakae 220
                   ++l+ ek e++k+k+ql+++ +  e++++e +++l+d  +  ++ +e+l  g G +++ +++ e+   ++  + ++++++++    ++++   + +++ +a+k+ ++ ++++a+++
  MMETSP1174-20130828|21538_1  19 LEKLRLEKDEVDKMKKQLEDDLLACENKHAEEKSNLNDELEAMRAVKEQLDKGGGSHNETHDTIEK---LKELHEKEKREVADG---HMQNMDVMRKEHMEAQKELEDMVARMAGER 129
                  456777888999999999999999999999999999988888888888888887777776666644...333333333333222...122222222333333333333333333333 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.5    0.0014      0.54     218     352 ..       7     143 ..       1     146 [. 0.75

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0014
    TIGR02785 218 eleglqeklekaleelaaeek.lekkleevqleaqelkelieekkaqedvnelkkavalvklknlkaakkeeekedlleeakklreeaKkqlkklkekyfareeeel...krelkelkpvvkelaqlvkqfieafeaeK 352
                    e++q+ ++ +le+l+ e+  ++k ++++++++   ++   + +++++ n+  +a+++vk +  k   +++e++d+ e+ k+l+e+ K+++++ + +      +e+   ++el+++   ++   +++++++e+ e+eK
  MMETSP1174-20130828|21538_1   7 DREAAQRLVKAELEKLRLEKDeVDKMKKQLEDDLLACENK--HAEEKSNLNDELEAMRAVKEQLDKGGGSHNETHDTIEKLKELHEKEKREVADGHMQNMDVMRKEHmeaQKELEDMVARMAGERDAMNSLQEKLEKEK 143
                  5677888888889999888886888888888888777766..44777888999999********99999999*********************9776655555555500055555555555555678888888887776 PP

>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.9    0.0013      0.48      82     125 ..      75     117 ..      44     143 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
    TIGR01478  82 YqkthdpyeqLkelveknrtkstggngaepmstlekeLLekyee 125
                  + +thd+ e+Lkel ek++  + +g+ +++m  + ke +e  +e
  MMETSP1174-20130828|21538_1  75 HNETHDTIEKLKELHEKEKREVADGH-MQNMDVMRKEHMEAQKE 117
                  579****************9999987.8999*****99987765 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  10.0     0.021       7.6      65     185 ..      26     147 ..       3     153 .] 0.53

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.021
    TIGR02231  65 tseadseriaelrkkireleaeledledr.adalkklkkfledire..kltepikd..lkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtl 185
                  + e  ++  ++l++ +++ e++ ++ +++ +d l++ + + e++ +  ++ ++ +d   k +e + ke +   ++a  ++++++   +e +++++ele +++++  e+ a+ + +e+ +k+ l+ l
  MMETSP1174-20130828|21538_1  26 KDE-VDKMKKQLEDDLLACENKHAEEKSNlNDELEAMRAVKEQLDKggGSHNETHDtiEKLKELHEKEKR---EVADGHMQNMDVMRKEHMEAQKELEDMVARMAGERDAMNSLQEKLEKEKLILL 147
                  122.222224555555555444443333325566666644444433114555555533333333333333...34445566666777888889999999***999999999996666666666655 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   9.8     0.027        10     135     256 ..      27     145 ..       4     152 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.027
    TIGR03794 135 eaLeetigklreeeaaLsqevakqrqllsrklaklkrarillqqarkeq.ekrdeadkaeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnlntei 256
                     +++ ++l++   a +++ a+ ++ l+ +   l+ +r   +q +k +  +++  d  e   el++k + e  +  ++++ +   +    a+kele++ ar+   r  ++ l++kl+++  i
  MMETSP1174-20130828|21538_1  27 DEVDKMKKQLEDDLLACENKHAEEKSNLNDE---LEAMRAVKEQLDKGGgSHNETHDTIEKLKELHEKEKREVADGHMQNM-DVMRKEHMEAQKELEDMVARMAGERDAMNSLQEKLEKEKLI 145
                  2233333344444444455555566555555...55677677777777656666667777666555544444333333333.33334455799************************998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       590  (0.143832); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.88
# Mc/sec: 229.48
//
Query:       MMETSP1174-20130828|21539_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1274.64
//
Query:       MMETSP1174-20130828|21543_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   12.8   0.0     0.0072   12.0   0.0    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0084   13.5   0.0       0.32    8.3   0.0    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.5e-06    0.0072     461     543 ..      52     147 ..      49     165 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.5e-06
    TIGR02917 461 qpdnaslynllgaiylgkkdlakAreafekALkie........pdffpAlanLArldlqekniddAkqrfekvlaid.....pknlkallaLaela 543
                   +d as+ n++++i++ +++l +A   ++ AL++         p  ++++  LA l   ++n ++A   f +vla       p++ ++++  ++la
  MMETSP1174-20130828|21543_1  52 HQDMASSVNTMAIILQDQGNLTEADLLLRCALSLRekslgpehPKVAKSMNDLAFLLKTQGNYPEAESLFIRVLALRektlgPEHHDVMTSVFNLA 147
                  5799****************************98533333222455688899999999***************97652233377777777766665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00016      0.32      64      98 ..      55      89 ..      50     121 .. 0.73
   2 !    3.8   0.0    0.0037       7.7     166     198 ..      95     127 ..      87     136 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00016
    TIGR02521 64 dadanlalAlyyqqlgelekAeesfrkAltlkpnn 98
                  a+  + +A+++q++g+l++A+   r Al+l +++
  MMETSP1174-20130828|21543_1 55 MASSVNTMAIILQDQGNLTEADLLLRCALSLREKS 89
                 55667889*****************9999997654 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0037
    TIGR02521 166 pkrpesllelaelklkkgqyaeAralleryqqt 198
                  pk ++s+++la l   +g+y eA++l+ r+ ++
  MMETSP1174-20130828|21543_1  95 PKVAKSMNDLAFLLKTQGNYPEAESLFIRVLAL 127
                  444455555555555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1174-20130828|21544_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.5   0.2      0.025   11.7   0.1    1.0  1  TIGR02923 AhaC: ATP synthase A1, C subunit


Domain annotation for each model (and alignments):
>> TIGR02923  AhaC: ATP synthase A1, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.2e-06     0.025      80     117 ..       5      42 ..       1      53 [. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.2e-06
    TIGR02923  80 rispgalrdliraylkkfDvrNiktliraklanlsaee 117
                  +  p  +++ i +  k +Dvr +k ++ra ++  +   
  MMETSP1174-20130828|21544_1   5 KAMPRIVEKSILKSKKMYDVRGVKDIVRAMATASKMRH 42 
                  55666778899999***************987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|21542_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1659.86
//
Query:       MMETSP1174-20130828|21546_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1213.45
//
Query:       MMETSP1174-20130828|21545_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-65  209.5   0.0    2.1e-08   31.7   0.0    9.6  9  TIGR00756 PPR: pentatricopeptide repeat domain
    1.3e-05   22.1   0.0          5    3.7   0.0    5.2  6  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0012   16.6   0.3       0.74    7.5   0.1    3.6  4  TIGR02561 HrpB1_HrpK: type III secretion protein HrpB1/HrpK
  ------ inclusion threshold ------
      0.025   12.7   0.4      0.055   11.6   0.2    1.5  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
      0.051    9.8   0.0        1.4    5.1   0.0    2.5  4  TIGR01307 pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.032        27      19      35 .]      20      36 ..      18      36 .. 0.93
   2 !   29.0   0.0   1.8e-10   1.5e-07       1      35 []      37      71 ..      37      71 .. 0.97
   3 !   31.7   0.0   2.5e-11   2.1e-08       1      35 []      72     106 ..      72     106 .. 0.97
   4 !   23.1   0.0   1.4e-08   1.2e-05       2      27 ..     108     133 ..     107     138 .. 0.92
   5 !   30.9   0.0   4.5e-11   3.7e-08       1      35 []     139     173 ..     139     173 .. 0.96
   6 !   22.4   0.0   2.3e-08   1.9e-05       2      35 .]     175     209 ..     174     209 .. 0.86
   7 !   18.7   0.0   3.4e-07   0.00028      14      35 .]     224     245 ..     210     245 .. 0.90
   8 !   26.9   0.0   8.6e-10     7e-07       1      34 [.     246     279 ..     246     280 .. 0.95
   9 !   10.6   0.0   0.00013      0.11       1      34 [.     281     314 ..     281     315 .. 0.96

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.032
    TIGR00756 19 AlelfdeMkergivPda 35
                 Al+++ e++ +g++Pd+
  MMETSP1174-20130828|21545_1 20 ALQFLSEIHHDGVEPDV 36
                 899************96 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 1.8e-10
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++n+ is++ k g++e+Al+l+ eM ++g+ Pd+
  MMETSP1174-20130828|21545_1 37 ISFNAAISACEKGGQWEKALQLLSEMPDDGVQPDV 71
                 58*******************************96 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 2.5e-11
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++n+ is++ k+g++e+A+ l+d+M+ +g++Pd+
  MMETSP1174-20130828|21545_1  72 ISFNAAISACEKSGQWEKAIHLLDQMRQCGVEPDV 106
                  58*******************************96 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 1.4e-08
    TIGR00756   2 tyntlisglckagrveeAlelfdeMk 27 
                  t+n+ is++ k g++e+A++l+deM+
  MMETSP1174-20130828|21545_1 108 TFNAAISACEKGGQWEKAIQLLDEMQ 133
                  9************************8 PP

  == domain 5    score: 30.9 bits;  conditional E-value: 4.5e-11
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  +++++ +s++ k+g++e+Al l+ eM+erg++P+a
  MMETSP1174-20130828|21545_1 139 ISFSSAMSACEKSGQWEKALHLLSEMRERGVEPNA 173
                  58999****************************96 PP

  == domain 6    score: 22.4 bits;  conditional E-value: 2.3e-08
    TIGR00756   2 tyntlisglck.agrveeAlelfdeMkergivPda 35 
                  ++n+ is+++   g++e+A++l deM+ +g++Pd+
  MMETSP1174-20130828|21545_1 175 SFNAAISACASgGGQWEKAVQLIDEMRQNGLEPDV 209
                  78888888877258*******************96 PP

  == domain 7    score: 18.7 bits;  conditional E-value: 3.4e-07
    TIGR00756  14 grveeAlelfdeMkergivPda 35 
                  g++e+A++l+ eM+++g+ Pd+
  MMETSP1174-20130828|21545_1 224 GQWEKAIQLLAEMQRNGVAPDV 245
                  8*******************96 PP

  == domain 8    score: 26.9 bits;  conditional E-value: 8.6e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++++ is++ k g++++Alel+ eM+ +g++P+
  MMETSP1174-20130828|21545_1 246 ISFSAAISACEKGGEWNKALELLGEMRQCGVEPN 279
                  58999****************************9 PP

  == domain 9    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  ++yn++i +l k  r eeA e + + ++rg++ d
  MMETSP1174-20130828|21545_1 281 ISYNAVIESLEKMQRNEEADEAYMDAVKRGFYVD 314
                  69*****************************988 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   0.0    0.0092       7.6     218     249 ..      28      60 ..      24      63 .. 0.85
   2 !    3.5   0.0    0.0071       5.8     218     249 ..      63      95 ..      60     101 .. 0.87
   3 ?    0.2   0.0     0.072        59     222     249 ..     102     130 ..      96     133 .. 0.85
   4 ?   -0.8   0.0      0.14   1.1e+02     221     250 ..     133     163 ..     122     174 .. 0.83
   5 !    3.6   0.0    0.0066       5.4     217     249 ..     200     234 ..     195     237 .. 0.86
   6 !    3.7   0.0     0.006         5     220     249 ..     239     269 ..     234     300 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0092
    TIGR02928 218 kdgvlddeviplvaalaaqeh.GdaRkAidlLr 249
                  + + ++ +vi + aa++a e+ G   kA++lL 
  MMETSP1174-20130828|21545_1  28 HHDGVEPDVISFNAAISACEKgGQWEKALQLLS 60 
                  567799************998578899999996 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0071
    TIGR02928 218 kdgvlddeviplvaalaaqeh.GdaRkAidlLr 249
                   d+ ++ +vi + aa++a e+ G   kAi lL 
  MMETSP1174-20130828|21545_1  63 PDDGVQPDVISFNAAISACEKsGQWEKAIHLLD 95 
                  578899**********998877*********96 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.072
    TIGR02928 222 lddeviplvaalaaqeh.GdaRkAidlLr 249
                  ++ +v+ + aa++a e+ G   kAi+lL 
  MMETSP1174-20130828|21545_1 102 VEPDVMTFNAAISACEKgGQWEKAIQLLD 130
                  8899*********9998578899***996 PP

  == domain 4    score: -0.8 bits;  conditional E-value: 0.14
    TIGR02928 221 vlddeviplvaalaaqeh.GdaRkAidlLre 250
                   +  +vi + +a++a e+ G   kA+ lL e
  MMETSP1174-20130828|21545_1 133 QVVPDVISFSSAMSACEKsGQWEKALHLLSE 163
                  57789*******9998777*********975 PP

  == domain 5    score: 3.6 bits;  conditional E-value: 0.0066
    TIGR02928 217 fkdgvlddeviplvaalaaqeh..GdaRkAidlLr 249
                  ++++ l+ +vi + aa++a e+  G   kAi+lL 
  MMETSP1174-20130828|21545_1 200 MRQNGLEPDVISFSAAISACEKggGQWEKAIQLLA 234
                  56778999***********9996678889999995 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.006
    TIGR02928 220 gvlddeviplvaalaaqeh.GdaRkAidlLr 249
                  + +  +vi + aa++a e+ G+  kA++lL 
  MMETSP1174-20130828|21545_1 239 NGVAPDVISFSAAISACEKgGEWNKALELLG 269
                  557889**********98868999*****95 PP

>> TIGR02561  HrpB1_HrpK: type III secretion protein HrpB1/HrpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.26   2.1e+02      63      91 ..      49      80 ..      38      87 .. 0.75
   2 !    7.5   0.1    0.0009      0.74      30     104 ..      85     160 ..      70     182 .. 0.67
   3 ?    1.8   0.0     0.048        39      63      93 ..     151     184 ..     149     220 .. 0.64
   4 ?    3.9   0.1     0.011       8.9      33      92 ..     191     255 ..     178     264 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.26
    TIGR02561 63 rgnyddaaRilrEllasagaa...pygkAllA 91
                  g+++ a  +l+E+  +  ++   ++  A+ A
  MMETSP1174-20130828|21545_1 49 GGQWEKALQLLSEMPDDGVQPdviSFNAAISA 80
                 589**********9877655544455555555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0009
    TIGR02561  30 adpediellldAlR..vlrPnlkeldlldgvlli..argnyddaaRilrEllasagaapygkAllAlcLsakgDdeWkl 104
                  ++ e +  lld +R  ++ P+   + ++++ ++   + g+++ a+ +l E++      ++++A+ A+  s + +++ +l
  MMETSP1174-20130828|21545_1  85 GQWEKAIHLLDQMRqcGVEPD---VMTFNAAISAceKGGQWEKAIQLLDEMQVVPDVISFSSAMSACEKSGQWEKALHL 160
                  555566666666662223343...446666666522569***************999*********9766665555555 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.048
    TIGR02561  63 rgnyddaaRilrEllasagaa...pygkAllAlc 93 
                   g+++ a  +l+E+     ++   ++  A+ A++
  MMETSP1174-20130828|21545_1 151 SGQWEKALHLLSEMRERGVEPnaiSFNAAISACA 184
                  6899999999999976544433356777777765 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.011
    TIGR02561  33 ediellldAlR..vlrPnlkeldlldgvlliargnyddaaRilrEllasagaa...pygkAllAl 92 
                  e +  l+d +R  +l P++       +    + g+++ a+ +l+E++ +  a+   +++ A+ A+
  MMETSP1174-20130828|21545_1 191 EKAVQLIDEMRqnGLEPDVISFSAAISACEKGGGQWEKAIQLLAEMQRNGVAPdviSFSAAISAC 255
                  5555566666644577777776666666677889***********98776555445677776665 PP

>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   6.7e-05     0.055      43      67 ..     411     435 ..     397     442 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.7e-05
    TIGR03142  43 drLaELerdeaeglldeaeaeaaka 67 
                  +rL EL++ ea+gll+++eaea k+
  MMETSP1174-20130828|21545_1 411 ERLDELKEAEAQGLLTAEEAEATKK 435
                  7********************9987 PP

>> TIGR01307  pgm_bpd_ind: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0017       1.4      87     151 ..      35      99 ..      18     120 .. 0.75
   2 ?    3.6   0.0    0.0049         4      90     141 ..      73     124 ..      57     139 .. 0.83
   3 ?   -1.0   0.0      0.12        97      94     135 ..     144     185 ..     127     202 .. 0.82
   4 ?    0.7   0.0     0.038        31      91     137 ..     248     294 ..     229     320 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0017
    TIGR01307  87 elfendalleaidrvkeaekklhllGLlsdGGvhshedhllalvelaakrgiekvvlhlftDGRD 151
                  ++ + +a ++a+++  + ek+l ll  + d Gv  +   + a ++ ++k+g  +  +hl+   R 
  MMETSP1174-20130828|21545_1  35 DVISFNAAISACEKGGQWEKALQLLSEMPDDGVQPDVISFNAAISACEKSGQWEKAIHLLDQMRQ 99 
                  55666777888999999999999999999999999999999999999999988888999877664 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0049
    TIGR01307  90 endalleaidrvkeaekklhllGLlsdGGvhshedhllalvelaakrgiekv 141
                  + +a ++a+++  + ek++hll  + + Gv  +   + a ++ ++k g  + 
  MMETSP1174-20130828|21545_1  73 SFNAAISACEKSGQWEKAIHLLDQMRQCGVEPDVMTFNAAISACEKGGQWEK 124
                  456778899******************************9999998876544 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.12
    TIGR01307  94 lleaidrvkeaekklhllGLlsdGGvhshedhllalvelaak 135
                   ++a+++  + ek+lhll  + + Gv  +   + a ++ +a+
  MMETSP1174-20130828|21545_1 144 AMSACEKSGQWEKALHLLSEMRERGVEPNAISFNAAISACAS 185
                  567899999999**************9998888888877765 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.038
    TIGR01307  91 ndalleaidrvkeaekklhllGLlsdGGvhshedhllalvelaakrg 137
                   +a ++a+++  e +k+l llG + + Gv  +     a++e  +k++
  MMETSP1174-20130828|21545_1 248 FSAAISACEKGGEWNKALELLGEMRQCGVEPNDISYNAVIESLEKMQ 294
                  56778899999999***************999888888888777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1598.14
//
Query:       MMETSP1174-20130828|21549_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|21551_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|21550_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-15   53.0   0.0    1.2e-14   52.8   0.0    1.1  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
    1.1e-13   49.1   0.0    1.4e-13   48.7   0.0    1.1  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    3.1e-13   48.0   0.0    2.1e-12   45.3   0.0    2.0  1  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.7e-12   45.6   0.0    2.2e-12   45.2   0.0    1.1  1  TIGR01990 bPGM: beta-phosphoglucomutase
    1.3e-11   42.1   0.1    1.7e-11   41.7   0.1    1.1  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
      2e-07   29.0   0.1    2.7e-07   28.6   0.1    1.1  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
    2.4e-06   25.1   0.2    3.2e-06   24.7   0.2    1.2  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    6.6e-06   23.8   0.0    7.9e-06   23.6   0.0    1.2  1  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
    2.3e-05   22.1   0.0    5.6e-05   20.8   0.0    1.3  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    7.5e-05   20.4   0.0    8.5e-05   20.2   0.0    1.2  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    0.00016   19.9   0.0    0.00034   18.9   0.0    1.6  1  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00067   17.3   0.0     0.0011   16.7   0.0    1.3  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
     0.0012   16.2   0.0     0.0014   15.9   0.0    1.1  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
     0.0027   15.6   0.0      0.003   15.4   0.0    1.2  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
     0.0088   13.3   0.0       0.05   10.8   0.0    1.9  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
  ------ inclusion threshold ------
      0.021   12.8   0.0      0.029   12.3   0.0    1.2  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   4.6e-17   1.2e-14      61     184 ..      18     147 ..       4     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 4.6e-17
    TIGR02009  61 kelseekieqlaerknelyrellrltgaevlpgienlleel.kkkkiavalgsss......knakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvk.peecvvfEDaeaGveaaraagmfav 184
                  +e+    i++l  +k+e+y+ ++++  ae  pg+ +l++++ +  ++av++ s++      k  +a++ +  l  ++d+++++++v   KP+P ++ +a e+Lg++ p +cvv+ED+ +G++aa+ a+m+++
  MMETSP1174-20130828|21550_1  18 EEARMALIDDLQDKKTEIYKGIVSEV-AEPRPGVLELMDAAiATPGLAVGICSAAtrggfdKVVDALVGQDRL-AKLDVIIAGDDVTAKKPDPMIYDLARERLGISdPRRCVVIEDSMVGLRAAKGANMRCL 147
                  4556667899**********999988.9******999987616678******998443333333333444344.468***************************9549**********************97 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   5.6e-16   1.4e-13      56     185 ..      16     149 ..       9     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 5.6e-16
    TIGR01449  56 ageerdaervaelrklFlrhYeevaeeltsvfpgveaalea.LrakGlrlglvtnkPealarplLell...glakylevligGdslaqrkPdPePLllaaerlgv.epaqmvyvGDsevDiaaArAAGlpsvllt 185
                  a+ee + + +  l+ + ++ Y+ +  e++ + pgv + ++a + + Gl +g++    ++   +++++l   + + +l+v+i+Gd+++ +kPdP    la erlg+ +p  +v + Ds v + aA+ A ++ + +t
  MMETSP1174-20130828|21550_1  16 ATEEARMALIDDLQDKKTEIYKGIVSEVAEPRPGVLELMDAaIATPGLAVGICSAATRGGFDKVVDALvgqDRLAKLDVIIAGDDVTAKKPDPMIYDLARERLGIsDPRRCVVIEDSMVGLRAAKGANMRCL-IT 149
                  677788888999***********************88887527889*******999887655555544222667789***************************95699*******************9965.44 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   8.2e-15   2.1e-12      92     152 ..      84     147 ..      18     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 8.2e-15
    TIGR01509  92 vrlgledkfdkvid..dvgsgKPdpdiylqalkklglk.peeclfvdDsaagieaakaaGmktv 152
                  v  +  +k d++i   dv+ +KPdp+iy  a ++lg++ p +c++++Ds +g++aak a+m++ 
  MMETSP1174-20130828|21550_1  84 VGQDRLAKLDVIIAgdDVTAKKPDPMIYDLARERLGISdPRRCVVIEDSMVGLRAAKGANMRCL 147
                  44566778899998889********************************************975 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   8.6e-15   2.2e-12      67     183 ..      25     146 ..      13     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 8.6e-15
    TIGR01990  67 keelaerknekYvellkeltpedvlpgikelleel.kkkkikialasaskna..klvleklelkd...kfdaivdaaevkkgkPdPeiFlaaaeklgvs.peecigieDaeaGieaikaagila 183
                  + +l ++k e Y+ +++e+ +    pg+ el++ +  + ++ +++ sa++ +   +v+++l  +d   k+d+i+ +++v+  kPdP i+  a e lg+s p +c++ieD+ +G++a+k a++  
  MMETSP1174-20130828|21550_1  25 IDDLQDKKTEIYKGIVSEVAEP--RPGVLELMDAAiATPGLAVGICSAATRGgfDKVVDALVGQDrlaKLDVIIAGDDVTAKKPDPMIYDLARERLGISdPRRCVVIEDSMVGLRAAKGANMRC 146
                  678999***********99765..6*******87516789********9987335799998655422278****************************7599******************9975 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   6.8e-14   1.7e-11      79     196 ..      25     145 ..      12     158 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 6.8e-14
    TIGR01422  79 veelyeafepllleklaeyaelipgvlevva.klrargikigsttGYtrevldvvlka..AaaqGyrpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDtvpdieeGrnAgvw 196
                  +++l ++ +++    ++e+ae+ pgvle+++ ++ + g+ +g ++  tr   d+v++a   +++  + d+++a ddv+a +P P++   + + lg++d++ +v ++D++ +++  + A++ 
  MMETSP1174-20130828|21550_1  25 IDDLQDKKTEIYKGIVSEVAEPRPGVLELMDaAIATPGLAVGICSAATRGGFDKVVDAlvGQDRLAKLDVIIAGDDVTAKKPDPMIYDLARERLGISDPRRCVVIEDSMVGLRAAKGANMR 145
                  677777888888999*************996257888************9999999862246666799****************9999999*********************999999885 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   1.1e-09   2.7e-07      84     189 ..      42     149 ..      11     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.1e-09
    TIGR03351  84 aevvalpGveeai.rdLrskGikvaLttGfdrevaekllekl.gWsvgedvDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDtanDleaginagatlvvG 189
                  + ++  pGv e++ +++   G+ v++     r   +k++++l g +  +++D++++++dv+a +P P +   a er g++d r+ +v+ D+   l+a++ a +++++ 
  MMETSP1174-20130828|21550_1  42 EVAEPRPGVLELMdAAIATPGLAVGICSAATRGGFDKVVDALvGQDRLAKLDVIIAGDDVTAKKPDPMIYDLARERLGISDPRRCVVIEDSMVGLRAAKGANMRCLIT 149
                  34566799999984467888999999999999999999987637778899*****************98889**************************9999888764 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   1.3e-08   3.2e-06      86     183 ..      57     158 ..      33     171 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.3e-08
    TIGR01454  86 elradglgtaiatgksgprarsllea.lgl..lelldevigsdevarpkpapdivrealdlldva.aeaavmvgdalidlasaraagvaavaalwgetdeae 183
                   + + gl + i++  +      +++a +g   l  ld +i  d+v+  kp p i   a ++l+++ + ++v++ d+++ l++a++a + ++ +    t+e +
  MMETSP1174-20130828|21550_1  57 AIATPGLAVGICSAATRGGFDKVVDAlVGQdrLAKLDVIIAGDDVTAKKPDPMIYDLARERLGISdPRRCVVIEDSMVGLRAAKGANMRCLITYTDSTSEED 158
                  45556666666544433333333333144311455899*************************9647899****************9988776665555555 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.1e-08   7.9e-06     128     188 ..      81     142 ..      24     156 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.1e-08
    TIGR02247 128 eallpsdlgalFDevvEsckeglrKPDariyqlvlerlgv.kPeeivfLDDLgsnlkaAakl 188
                   al+  d+ a+ D+++       +KPD+ iy+l+ erlg+  P  +v ++D    l+aA+  
  MMETSP1174-20130828|21550_1  81 DALVGQDRLAKLDVIIAGDDVTAKKPDPMIYDLARERLGIsDPRRCVVIEDSMVGLRAAKGA 142
                  5778889999*****************************945*********99999999865 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.2e-07   5.6e-05     138     199 ..      93     153 ..      89     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.2e-07
    TIGR02253 138 davivseelgveKPhpkiFkaalkrlgv.kpeeavmvGDrlekDikGaknlglktvwinrgks 199
                  d +i ++++ ++KP+p i+  a +rlg+ +p  +v + D+++   + ak + +  + + +++s
  MMETSP1174-20130828|21550_1  93 DVIIAGDDVTAKKPDPMIYDLARERLGIsDPRRCVVIEDSMV-GLRAAKGANMRCLIT-YTDS 153
                  78999**********************9569*********97.588888888887333.3333 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.3e-07   8.5e-05     130     200 ..      76     145 ..      26     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.3e-07
    TIGR02252 130 fDsrlrklLealgleelfdfvvvSaevgaeKPdpkIFekaleklg.ikpeevlhiGDslekDvegakaaGlr 200
                  fD+ + +l+ + +l+  +d+++   +v a+KPdp I++ a e+lg   p  ++ i Ds+   +++ak a +r
  MMETSP1174-20130828|21550_1  76 FDKVVDALVGQDRLA-KLDVIIAGDDVTAKKPDPMIYDLARERLGiSDPRRCVVIEDSMV-GLRAAKGANMR 145
                  566666666555554.68***************************56799*****99985.47777777666 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06   0.00034      95     142 ..      87     136 ..      44     143 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.3e-06
    TIGR01549  95 rkledyfelilvsdepgsKpepeiflaaleslgle..pevlhvGDnlsDi 142
                  ++l +++ +i+++d +++Kp+p+i++ a e+lg++  ++++++ D+   +
  MMETSP1174-20130828|21550_1  87 DRLAKLDVIIAGDDVTAKKPDPMIYDLARERLGISdpRRCVVIEDSMVGL 136
                  56789999*************************96224677777765555 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.1e-06    0.0011     113     180 ..      78     146 ..      56     149 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.1e-06
    TIGR01993 113 ralkrLgiedcFdgiidieaanle.........lilKPspeayekalreag.vdpekaifldDsarNiaaakalglkt 180
                  +++++L  +d+  +                      KP p  y+ a +  g  dp+++++++Ds+  + aak   ++ 
  MMETSP1174-20130828|21550_1  78 KVVDALVGQDRLAK---------LdviiagddvTAKKPDPMIYDLARERLGiSDPRRCVVIEDSMVGLRAAKGANMRC 146
                  44444444443332.........2333333333556***************99*******************999986 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0014      84     179 ..      32     133 ..      13     160 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.6e-06
    TIGR02254  84 lnkefleileekarllpgAlelleaLkkk..lrlyivtn....GvrevqekrlrksglapffdrvlvsEdaGiekPdkkiFafaleriklkk.eevlmvGDsl 179
                    + ++ i++e a+  pg lel++a      l ++i +     G+ +v ++ + +  la+ +d ++  +d+  +kPd+ i+++a er+ ++   + +++ Ds+
  MMETSP1174-20130828|21550_1  32 KTEIYKGIVSEVAEPRPGVLELMDAAIATpgLAVGICSAatrgGFDKVVDALVGQDRLAK-LDVIIAGDDVTAKKPDPMIYDLARERLGISDpRRCVVIEDSM 133
                  445688999999999999999999876665688888874334489999999999999998.7**************************665515667777765 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05     0.003     121     183 ..      80     142 ..      12     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-05
    TIGR01428 121 lkslvkkagldlefdallsadavraYKPapkvYelalealgvk.peevllvasnawDlkgAkkl 183
                  +++lv +    +++d ++  d+v a KP+p +Y+la e+lg++ p++ +++  ++  l++Ak +
  MMETSP1174-20130828|21550_1  80 VDALVGQDR-LAKLDVIIAGDDVTAKKPDPMIYDLARERLGISdPRRCVVIEDSMVGLRAAKGA 142
                  445555555.3578999*************************8788888888888888888765 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.26        68      17      39 ..      38      60 ..      23      84 .. 0.77
   2 !   10.8   0.0    0.0002      0.05     187     225 ..      97     135 ..      65     150 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.26
    TIGR01459 17 GvvidGqeayPGavealaklkae 39
                 G+v +  e+ PG++e + + +a 
  MMETSP1174-20130828|21550_1 38 GIVSEVAEPRPGVLELMDAAIAT 60
                 89999999******999877664 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.0002
    TIGR01459 187 GGkviyvGkPypaifdkalkeleerekrrvllvGDslvt 225
                   G  +   kP+p i+d a ++l+  + rr +++ Ds+v 
  MMETSP1174-20130828|21550_1  97 AGDDVTAKKPDPMIYDLARERLGISDPRRCVVIEDSMVG 135
                  56667788****************************974 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.029      76     135 ..      90     146 ..      46     152 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00011
    TIGR01662  76 vpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlat 135
                  +++dv+ia    +  ++Kp +  ++ a +rl  +d+ ++vv+ D +++ l aak + +++
  MMETSP1174-20130828|21550_1  90 AKLDVIIAGD--DVTAKKPDPMIYDLARERLGISDPRRCVVIED-SMVGLRAAKGANMRC 146
                  3588888888..8899***************878999*******.999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 738.43
//
Query:       MMETSP1174-20130828|21548_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.4e-174  578.1   0.0   6.1e-174  577.9   0.0    1.0  1  TIGR01063 gyrA: DNA gyrase, A subunit
    7.9e-95  316.6   0.0    4.8e-93  310.7   0.0    2.0  2  TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
    2.2e-65  218.9   0.0      3e-64  215.2   0.0    1.9  2  TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit


Domain annotation for each model (and alignments):
>> TIGR01063  gyrA: DNA gyrase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.9   0.0  4.5e-177  6.1e-174     207     798 ..       2     610 ..       1     612 [. 0.94

  Alignments for each domain:
  == domain 1    score: 577.9 bits;  conditional E-value: 4.5e-177
    TIGR01063 207 GPDfPtgaiilgkkgireayktGrGkvvvRakveieekek.......dreaiivtelPyqvnkakliekiaelvkekkieGisdirDesdreGiRivielkrdavaevvlnklykltqlqvsfgvnllalvkg..lPkvlnlkelleafvehrkevitrrtkfeLrkakerahilegllialdniDevikliresknkeeakeelv.erfslsevqakaildlrlrrLtaleaekleeelkellekiaelkeiLaseerlleiikeeleeikeqfgdeRrteivaeeeekidiedliakeevvvtlsekgyvkrvpvsayr.sqkrggkGksglklkeedfiekllvasthdkllffsnkGkvYslkvyqlpeasrtakGkpivnllelekdekitailsvkefedeeylllatkkGvvkkvslsefknirskGiiaik.ldeeDelisvklvkeedevlllskkGkavrfkeeevRalgraarGvrgiklkkedavvslevvkees....llLivtenGygkrtsieeyrlkkRggkGvksikvtekk...gkvvgalavkdedelllitsagkliRvsveevsevgrntqGvrllklkeddkvvsvelv 798
                  GPDfPtg+ i+g++   + y tGrG+v+vR+++ ie  +         r+aiivte+Pyq nka+l+ kia+lv++kk+ G+sd+rDes+ +G+Rivielk+dav+evvln+l+++t lq+sf+ n la+  +   Pk ++lk++le f+e+r e++trr +f+L+ka +r hi++gll+al+niD vi +ir+  ++++a e+l    + ls  qa+a+l l+l rLt ++++kle+el++l++k a+l+ iL ++++++++ikeel e+++ +g++Rrtei +e+  + d+edl+++   +v++++ gy+kr+ ++++  +q rg++Gk+g+k+keed ++++l++++hd++lf++++G  + l+++++p +srtakG p+ ++l+l+ +e ++a l v ef+++++l++at+kG +kk+ l +f++++s+G+iai+ l ++D + ++k+   + ++++++++G a +f+++++R +gr++rG ++i+l+++d +v ++v++ ++    +l+++t+ Gygkr+ + ++++++Rg kG+++ k+++     +++  +  +++++++ll tsag ++R++v+ + +++r ++Gvr+++l+++  +  v+l+
  MMETSP1174-20130828|21548_1   2 GPDFPTGGLIMGQS--PDLYATGRGSVKVRGRTCIEVVDGkrksksrPRSAIIVTEVPYQCNKAALLVKIADLVNDKKLMGVSDLRDESNMKGVRIVIELKKDAVPEVVLNNLFQSTPLQTSFPGNFLAISGNgtGPKRFTLKSALEDFLEFRFEIVTRRCNFRLKKASARLHIVSGLLQALQNIDGVIDVIRREPDRSSAAEKLKlPPLGLSAEQADAVLGLQLGRLTNMDRSKLEAELTDLQAKSADLQGILGDRSKVMDLIKEELLELAAAHGKPRRTEILMEDGGNLDEEDLVDNAPSMVVITRAGYIKRMALEEFStTQGRGTRGKTGTKMKEEDEVAQVLTCKDHDTILFVTTRGVAHVLRTFKIPMGSRTAKGVPLPSVLPLSANEGVAAALAVVEFDEDQHLVMATRKGWIKKTPLAAFTTTNSRGLIAISaLPDDDAVQWAKISGPNSSIIVATRNGYASHFHTDSLRSTGRKSRGCMAINLREGDEMVDMDVLSTNEdetpHLIVMTTSGYGKRARVPDFPIRSRGVKGIIATKFKNLGavaDELACLRGTDSDSDMLLTTSAGVIVRQKVDGLPVQSRLATGVRVQRLDKGTIINDVSLI 610
                  9***********98..599****************9754322334446899*******************************************************************************854236********************************************************************97257***************************************************************************************************************73699*****************************************************************************************************************7589999*******999*********************************************998855555679*******************************998743222666666677788889999******************************99888888765 PP

>> TIGR01061  parC_Gpos: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.7   0.0   3.5e-96   4.8e-93     207     726 ..       2     538 ..       1     547 [. 0.91
   2 !    7.5   0.0   0.00019      0.26     647     734 ..     509     600 ..     500     603 .. 0.69

  Alignments for each domain:
  == domain 1    score: 310.7 bits;  conditional E-value: 3.5e-96
    TIGR01061 207 gPdfPtGgeiqgedeikkayetGkGkviirakieievlkngke.......qiviteiPyevnkanlvkkieeiivdkkvagieevrdesdrkGlriiielkkdlnaekvlnylykktdlqinynlnmvaian..rtPilvgllsildayikhskevilnrskyelekakkrleiveGlikaisildeviklirasedksdakeklia.kfeftenqaeaivslrlyrltntdivelkeeeeelekkikeleeiiasekarkkllkkklkelkkkfaqerrskledkikkikieeeelieeedlyvvvtkdGyikrtskrsfaaskl......eelglkdddillaqtiinttdklllvtskgnlinlpvhkladirwkdlgehlskkitldenetivavevlnefdvdeailvlasklglvkrieltelkikrskavlilk.lkdedelisavltkkeklivlvsklgyallflveevnvvgakaaGvkgmklkeddevksvlilease....slvlltqegsvkrlsiselkvtsrakra 726
                  gPdfPtGg i g+    + y tG+G v +r+++ iev++++++        i++te+Py+ nka l+ ki +++ dkk+ g++++rdes+ kG+ri+ielkkd+  e vln l++ t lq ++  n++ai+     P + +l s l+ +++++ e++++r ++ l+ka+ rl+iv Gl++a++ +d vi +ir   d+s a ekl+     +  +qa+a++ l+l rltn d  +l+ e  +l+ k + l+ i+++  ++++l+k++l el   ++++rr+++  + +  +++ee+l+++    vv+t++Gyikr++   f +++       +  ++k++d +  + + + +d++l+vt++g    l  +k++  ++   g  l   + l +ne + a+  + efd ++++lv+a++ g +k++ l  +++++s+ + +++ l d+d    a++   ++ i++++++gya  f+++ +   g+k+ G  +++l+e de++ + +l+++e    +l+++t+ g  kr ++ ++ + sr  ++
  MMETSP1174-20130828|21548_1   2 GPDFPTGGLIMGQS--PDLYATGRGSVKVRGRTCIEVVDGKRKsksrprsAIIVTEVPYQCNKAALLVKIADLVNDKKLMGVSDLRDESNMKGVRIVIELKKDAVPEVVLNNLFQSTPLQTSFPGNFLAISGngTGPKRFTLKSALEDFLEFRFEIVTRRCNFRLKKASARLHIVSGLLQALQNIDGVIDVIRREPDRSSAAEKLKLpPLGLSAEQADAVLGLQLGRLTNMDRSKLEAELTDLQAKSADLQGILGDRSKVMDLIKEELLELAAAHGKPRRTEILME-DGGNLDEEDLVDNAPSMVVITRAGYIKRMALEEFSTTQGrgtrgkTGTKMKEEDEVAQVLTCKDHDTILFVTTRGVAHVLRTFKIPMGSRTAKGVPLPSVLPLSANEGVAAALAVVEFD-EDQHLVMATRKGWIKKTPLAAFTTTNSRGLIAISaLPDDDAVQWAKISGPNSSIIVATRNGYASHFHTDSLRSTGRKSRGCMAINLREGDEMVDMDVLSTNEdetpHLIVMTTSGYGKRARVPDFPIRSRGVKG 538
                  9*********9976..69********************9986422222227*****************************************************************************99751257*********************************************************************862699***********************************************************************9866.5679******************************999762222225678999999999999**********************************************************.999***********************998877762666666667888888*****************************************9999888877623323566777777888888888777776655 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00019
    TIGR01061 647 eklivlvsklgyallflveevnvvgakaaGvkgmklkeddevksvlil....easeslvlltqegsvkrlsiselkvtsrakravkllelkk 734
                    ++++++  gy+ + +v + ++ ++  +G+ + k+k+   v   l++    +++  ++l t+ g + r +++ l v sr +++v++  l k
  MMETSP1174-20130828|21548_1 509 TPHLIVMTTSGYGKRARVPDFPIRSRGVKGIIATKFKNLGAVADELAClrgtDSDSDMLLTTSAGVIVRQKVDGLPVQSRLATGVRVQRLDK 600
                  34567778889999999999999999999999999987655555444422204444445555666677888999999999999998876655 PP

>> TIGR01062  parC_Gneg: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0   2.2e-67     3e-64     208     671 ..       2     491 ..       1     506 [. 0.81
   2 !    4.7   0.0     0.001       1.4     536     695 ..     455     617 ..     442     628 .. 0.66

  Alignments for each domain:
  == domain 1    score: 215.2 bits;  conditional E-value: 2.2e-67
    TIGR01062 208 GpdfpteaeiidkkeeirkiyetGrGsvrvrarwkkedg............eivisalpyqvskskvieqiaiqlkdkklplvedirdesdhediirvvivprsnrvdtdavmeslfaltdleksyrlnlnvi.Gldnkpavknlleilqeflvfrrdivirrltyrlekvlkrleileglliaflnldevieiireedepkail....merfklseiqaeailnlrlrslakleekkikdeqselekeraqlekilkserklnqlvkkeikadakkygdarrssleereeakavsesdlipkepvtiilskmGwvr........sakGhdid.lkslkykaGdsekaavkgksndkvviidskGrsyaldalslssa..rgqGepltgkllldi..G.atienilvesedqklllasdaGkGflvkfndliarnkaGk.alislpenakvlaplvveddsdlvvaiteagrllvfpvddlpel.skGkGnklirik 671
                  Gpdfpt++ i+ +      +y tGrGsv+vr r   e              +i+++++pyq +k+ ++ +ia +++dkkl  v+d+rdes   + +r+vi+ +++ v +++v+++lf+ t l+ s+  n+  i G    p+   l   l++fl fr +iv+rr ++rl+k   rl+i+ gll a  n+d vi++ir+e +  ++     +  ++ls++qa+a+l l+l +l+ ++  k+ +e  +l+ + a l++il+++ k+ +l+k e+ + a ++g++rr+++   +   ++ e dl+ + p  +++++ G+++        + +G  +   ++ k k+ d    ++++k  d+++++ ++G  + l + +++ +   ++G pl   l l +  G a    ++  +edq+l++a+  G           + n  G  a+ +lp++  v  ++    +s  +++ t+ g    f  d l    +k +G   i+++
  MMETSP1174-20130828|21548_1   2 GPDFPTGGLIMGQSP---DLYATGRGSVKVRGRTCIEVVdgkrksksrprsAIIVTEVPYQCNKAALLVKIADLVNDKKLMGVSDLRDES-NMKGVRIVIELKKDAV-PEVVLNNLFQSTPLQTSFPGNFLAIsGNGTGPKRFTLKSALEDFLEFRFEIVTRRCNFRLKKASARLHIVSGLLQALQNIDGVIDVIRREPDRSSAAeklkLPPLGLSAEQADAVLGLQLGRLTNMDRSKLEAELTDLQAKSADLQGILGDRSKVMDLIKEELLELAAAHGKPRRTEILMED-GGNLDEEDLVDNAPSMVVITRAGYIKrmaleefsTTQGRGTRgKTGTKMKEEDEVAQVLTCKDHDTILFVTTRGVAHVLRTFKIPMGsrTAKGVPLPSVLPLSAneGvAAALAVVEFDEDQHLVMATRKGWIKKTPLAAFTTTNSRGLiAISALPDDDAVQWAKISGPNS-SIIVATRNGYASHFHTDSLRSTgRKSRGCMAINLR 491
                  9*********99876...57**********99876554444899999***9***************************************.67889*****998887.89******************976662666789********************************************************9987654431112456899**********************************************************************98655.6678999*****************9733222222346666651456899********************************99997622467889988877765115444556667789*******98665444444555555555542556688887776655554455.45555777777788888876542567777776666 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.001
    TIGR01062 536 ndkvviidskGrsyaldalslss.argqGepltgkllldiGatieni.lv.esedq..klllasdaGkGflvkfndliarnkaGkali.....slpenakvlaplvved.dsdlvvaiteagrllvfpvddlpelsk.GkGnklirikaanakdreellldlkvlskqdsle 695
                  n ++++   +G    + ++sl s +r   +   + ++l  G ++  + ++ ++ed+  +l++ +  G+G   ++ d   r++  k +i     +l   a+ la+l  +d dsd++   t+ag ++  +vd lp+ s+   G++++r+           + d+ ++++ +sl+
  MMETSP1174-20130828|21548_1 455 NSSIIVATRNGYASHFHTDSLRStGRKSRGC--MAINLREGDEMVDMdVLsTNEDEtpHLIVMTTSGYGKRARVPDFPIRSRGVKGIIatkfkNLGAVADELACLRGTDsDSDML-LTTSAGVIVRQKVDGLPVQSRlATGVRVQRLDK------GTIINDVSLIPSDASLK 617
                  5566666666766666666665413333333..445666774433331321222222368999999*******************999444444667788899987665156655.56999************9887478999999982......34566677777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.17s 00:00:00.78 Elapsed: 00:00:00.64
# Mc/sec: 1326.08
//
Query:       MMETSP1174-20130828|21554_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|21555_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.44
# Mc/sec: 167.99
//
Query:       MMETSP1174-20130828|21558_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 591.51
//
Query:       MMETSP1174-20130828|21557_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-35  118.3   5.8    1.1e-34  117.9   4.0    1.0  1  TIGR01171 rplB_bact: ribosomal protein L2


Domain annotation for each model (and alignments):
>> TIGR01171  rplB_bact: ribosomal protein L2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   4.0   2.6e-38   1.1e-34      39     249 ..      37     257 ..      30     276 .. 0.84

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 2.6e-38
    TIGR01171  39 kkGrnnrGritvrhkgg.ghkklyrvidfkrdkkeieakvasieydPnrsariaLllyadGek.....ryilaPkglkvgdtvvsgeeadikvgnalplkniPvGttvhnielkpgkGgqlvrsaGtsaqilakeg..kyvllrlpsgevrkvekeCratiGevgnedhknvklGkaGrkrw..lGvr...PtvrGvamnPvdhPhGGGegrtskgrkkPvtPW 249
                  ++ r+ +G i   h        + r  d+  ++  i++ v++i ++P r a +a ++++d  +        +a +g+  g+ ++ g++a++ vgn lpl+++P Gt+  n+e +pg  g++ +++G +a ++++++    + +rlpsg  ++++++Cra +G v+    + + + kaGr+ +  + +r   P+vrGvamnPv+hPhGGG+ ++ +g  +P t  
  MMETSP1174-20130828|21557_1  37 RGCRKGKGSIFKSHTKNrKGPTKLRKCDYAEKQGFIKGIVKEILHEPGRGAPLAKVQFQDAYRykrntELFIAVEGMYSGQFLYCGKKAALTVGNVLPLASMPEGTVCCNLEESPGDRGKISKASGDYAVVITQDEdkGTTRVRLPSGSKKTLNSRCRAVVGIVAGGGRTDKPMLKAGRAFHkyRVKRnewPRVRGVAMNPVEHPHGGGNHQH-IG--HPSTTK 257
                  567888999987775540456789************************************853222224689*************************************************************998556789**********************998888888888888644113444455******************9988.77..677755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 895.64
//
Query:       MMETSP1174-20130828|21566_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|21564_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-126  419.6   0.2   5.6e-126  419.4   0.1    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
   9.7e-115  382.0   1.0   1.2e-114  381.7   0.7    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   2.2e-114  381.0   3.0   2.6e-114  380.8   2.1    1.0  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.1e-92  306.4   0.3    1.1e-91  306.1   0.2    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.5e-84  281.2   1.2    4.2e-84  280.9   0.8    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.4e-84  280.8   3.9    6.7e-84  280.5   2.7    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.9e-82  273.8   1.9    7.8e-82  273.4   1.3    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    6.3e-75  250.7   1.6    8.1e-75  250.4   1.1    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.6e-72  241.0   3.2      6e-70  234.5   0.3    2.0  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.8e-67  226.2   0.2    2.5e-67  225.8   0.1    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    7.1e-63  210.8   1.3    7.1e-63  210.8   0.9    1.3  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.5e-55  185.9   0.8    3.1e-55  185.6   0.6    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.6e-44  147.2   0.1    1.5e-43  146.4   0.0    1.3  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.8e-41  140.3   0.3    2.8e-41  139.7   0.2    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.5e-38  130.4   0.1    2.1e-38  129.9   0.1    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.4e-36  124.0   0.2    2.2e-36  123.3   0.1    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.6e-36  121.6   0.2    1.2e-35  120.9   0.1    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.5e-34  115.8   0.2    7.2e-34  115.2   0.1    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.2e-34  115.3   0.1    9.6e-34  114.7   0.1    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.4e-33  113.9   0.2    2.1e-33  113.3   0.1    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.6e-33  113.9   0.6    2.2e-33  113.5   0.1    1.4  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.6e-33  113.9   0.2    2.4e-33  113.4   0.2    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.7e-33  113.5   0.1      4e-33  112.9   0.1    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.6e-33  112.2   0.1    9.5e-33  111.4   0.0    1.3  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-32  111.4   0.1    1.8e-32  110.7   0.1    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.3e-32  109.4   0.8    6.8e-32  108.8   0.6    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    9.3e-32  108.4   0.2    1.9e-31  107.4   0.1    1.5  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.6e-31  107.4   0.7    2.5e-31  106.7   0.2    1.5  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      2e-31  106.9   0.7      1e-30  104.6   0.5    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      4e-31  106.2   0.1    5.8e-31  105.7   0.1    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    8.4e-31  105.0   0.1    1.3e-30  104.4   0.1    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.2e-30  104.6   0.1    1.8e-30  104.0   0.1    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.4e-30  104.6   0.1    2.3e-30  103.9   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.2e-28   97.1   0.6    4.4e-28   96.0   0.4    1.5  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.1e-26   91.5   0.2      2e-26   90.6   0.1    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.4e-26   89.8   0.1    3.4e-26   89.8   0.1    1.7  2  TIGR00955 3a01204: pigment precursor permease
    7.4e-26   87.8   1.8      2e-14   49.9   0.0    2.3  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.9e-25   86.6   0.4    6.6e-25   85.9   0.3    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.1e-25   86.2   0.3    8.2e-25   85.2   0.2    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.8e-24   82.1   1.4    1.5e-23   81.5   0.9    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.5e-22   77.1   0.0    5.1e-22   76.1   0.0    1.4  1  TIGR01288 nodI: nodulation ABC transporter NodI
    3.4e-22   76.8   0.2    1.4e-21   74.8   0.1    1.9  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.2e-21   74.9   0.2    1.8e-21   74.4   0.1    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-21   74.9   1.5    3.7e-21   73.5   0.9    1.7  1  TIGR01978 sufC: FeS assembly ATPase SufC
    2.5e-21   74.2   0.2    3.8e-21   73.6   0.1    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.6e-20   70.3   1.9    5.1e-16   56.1   0.5    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.4e-19   68.4   0.3    3.2e-19   67.2   0.2    1.5  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.1e-18   65.5   0.4    2.7e-18   64.3   0.3    1.6  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-18   64.8   0.1    2.7e-12   43.9   0.0    2.3  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.3e-18   65.4   0.6    2.5e-18   64.4   0.4    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.3e-18   63.7   0.3      3e-18   63.3   0.2    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.1e-18   63.5   0.0    5.2e-18   62.7   0.0    1.3  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.9e-16   54.9   0.0    5.1e-16   54.6   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    3.6e-13   47.4   0.0    7.3e-13   46.4   0.0    1.5  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      1e-12   45.2   0.0    3.9e-12   43.2   0.0    1.8  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.2e-11   40.8   0.2    1.9e-11   40.2   0.2    1.2  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.7e-09   32.5   0.5    3.2e-06   23.4   0.2    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.4   0.1  7.7e-128  5.6e-126     237     710 ..       6     490 ..       3     491 .. 0.94

  Alignments for each domain:
  == domain 1    score: 419.4 bits;  conditional E-value: 7.7e-128
    TIGR00958 237 redlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkka....layalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlg.eavreLsevysellkavGasekvFeyldRkPqle.lsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte.deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                  r++ ++++lrQ+ig+fd   + el S++++  + v   +s++v+  +  + ++++++if +   +  +lv+ ++ Plv++ +  ++k+  + +e +  + ++a+ +a E l  +rTV    +E   +  ++ +l+e ++ ++ ka    +a+ l++ + +++  + l+ + ++ ++++ +g+ ++g+     ++ lq+g +a+   + + + +  a  a+  +   + RkP ++ ++g  + + + Gk+eF+++ F+YPsr  +p+ k+L++ +e+G++valVG sGsGKSt + l+e++Y+P++G+vllDg++lke+d ++l++++++V qEP+lf+g++ eNi  G + +  +eev  aak+anahdFi+e++kgydtevg kG qlsgGqkqriAiARA++++P++L+LDeAtSALD e+e+++q+       +++rt l+iahrL t+++adki+vl kg+vve+Gth++L ek+++y +l
  MMETSP1174-20130828|21564_1   6 RRKYLSAVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERAKILEYECHLDEARDAMEMKArklgIANGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTGSDGFIAMFMLQTGaQALGGTGPFIKAIKAAQVAAFDILATIKRKPPIDaRKGGKKTEVVAGKIEFKNIGFTYPSRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAMtMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQalddLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKL 490
                  677899********************************************************************************************************************************998876544332333899999999**********************998876644444455555537999****************************983579999************************************************************************************************************98877*******************************************************************99988888765577899*******************************************9887 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.7   0.7  1.7e-116  1.2e-114      97     566 ..      12     491 ..       3     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 381.7 bits;  conditional E-value: 1.7e-116
    TIGR02203  97 klltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRf....davsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksL...tnvsaklqkglaaaesvfallDspp..ekdeGtralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLh 566
                   +l+     fd   + +l s++  + + v   +++ +   v   ++v++ +i+ +++ W ++l+  v +P++++ +  +sk   +  +    s + +  +++e+lq+ r v + + + a+   +    d++ + +  +a k+  a++l     ++++ v+l  + ++   q ++g+  +G+    ++am +l +  + L       + ++   +aa  ++a + ++p  ++ +G +++e v Gk+ef+n+ f+yp++ + ++ ++++l+veaG++valvG sGsGkst v+l+ RFy+pd+G++llDgvdl++l ++ LR+q+ +vsq+ +LF +tiaen++ g++  ++++eve+a++ a+++d++ + p+G dtevG++g++LsGGq+qR+aiaRa++kd  iL+LDeatsaLDnese+ vq+aL+ l+  ++RttlviahRL+ti++aD+ivvld+G +ve+Gth+eL++++G Y +L 
  MMETSP1174-20130828|21564_1  12 AVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERAKILEYechlDEARDAMEMKARKLGIANGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTGSD--GFIAMFMLQTGAQALggtGPFIKAIKAAQVAAFDILATIKRKPpiDARKGGKKTEVVAGKIEFKNIGFTYPSRkGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLatHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKLS 491
                  55555555666666666666777777777777777777777777899*****************************99999999999999*************************9998776662222677777888888899999999999999999999999999999999988888763..3345555555555551005556667777777777777777655126679**********************972578899*********************************************************************************************************************************************************************973368*******************************************9885 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.8   2.1  3.6e-116  2.6e-114      94     572 ..       6     491 ..       3     495 .] 0.91

  Alignments for each domain:
  == domain 1    score: 380.8 bits;  conditional E-value: 3.6e-116
    TIGR02204  94 rkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrika....ralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlv.agslgalsevlgelqraaGaaerliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpda.sdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarla 572
                  r++  + +l+ + ++fd + ++e+ s+++   + +++ v   +s  +  +  ++ +++  + t   ++++  ++ Plv++  +++++   +++     + + a++ a+e+l++++tv   + e+a+   ++ ++++a +a + + ++      ll  +  ++   ++  + ++ a+++ +g+  +G+ +  +++ + + a++lg  +  +  ++ a  aa  +   +k k+ i+a +  k+  + v g+ief+++ f+yP+r  ++  ++l+l+v++G tvalvG sG+Gkst ++l+ rfydP  G++lldGvdl+eld e lr+++ +v+q++ lf++ + eni+ G+  a + eeve+aak+a+a++fi ++p+Gydt++G +g +LsGGqkqriaiarai+kd  iLLLdeatsaLd ese+ vqqal+ l   ++rttlviahrL+t+++ad+ivvldkG +veqGth+eLi+k g y +l+
  MMETSP1174-20130828|21564_1   6 RRKYLSAVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERAKILEYECHLDEARDAMEMKARKlgiaNGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTGSDGFIAMFMLQTgAQALGGTGPFIKAIKAAQVAAFDILATIKRKPPIDARKGGKKT-EVVAGKIEFKNIGFTYPSRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAmTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLatHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKLS 491
                  777888999999***************************************************************************9999999999**********************************9999877665443332000023333333333334455567899******99999988877777765427899********************************9888776.5689*******************************************************************************************************9985779****************************************************************************98622589******************************************9995 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.1   0.2   1.5e-93   1.1e-91     431     689 ..     229     491 ..     164     494 .. 0.91

  Alignments for each domain:
  == domain 1    score: 306.1 bits;  conditional E-value: 1.5e-93
    TIGR01846 431 lGdildsPteassagkaalpelkGaiefenirfryke.dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakP.aiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyakly 689
                  l +i  +P    ++g      ++G+ief+ni f y      ++ ++l+l+++aG+++ +vG+sGsGkst  +l+ r+y P+ G vl+dgvdl  +d  wlr+q+g+v qe +lf ++i++ni+l+k  a+ +e+v  aak a ahdfi+e ++Gy+tevg kG++lsGGq+qria+ara++++P il+ldeatsald ese+v+++ l+++  ++ rt ++iahrl+t+++ad+i+vl+kG +ve+G+h el++k+g y kl 
  MMETSP1174-20130828|21564_1 229 LATIKRKPPIDARKGGKKTEVVAGKIEFKNIGFTYPSrKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKgAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlaTHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKLS 491
                  5566666555555566666789*************761557899********************************************************************************9752689******************************************************************************9744689*******************************************9885 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.9   0.8   5.9e-86   4.2e-84     232     708 ..       8     490 ..       3     492 .. 0.87

  Alignments for each domain:
  == domain 1    score: 280.9 bits;  conditional E-value: 5.9e-86
    TIGR03796 232 rflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlv.laliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqak...llna.eqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvle.npvdeeleeeeekaaeseekekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwde.tipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarL 708
                  ++l+ +lr  + +f+   a e+ s++    +  e+   + ++  +++++ v+  ++ + + ++ +al+ +++a + v+   + s+  ++a++ l + ++++ g+a ++lq++ t+     e   + ++     +   ++++  ++lg+a+ ll    +++t +t + +  + + ++ +ge   G    f + +  +++  ++l g++  ++ ++a      D+l   ++++  ++ ++     +++e + Gk+e++n+ f+y s+  +p+ ++++l+++ G+ vAlvG+sGsGkst  +lv  +y+p +G++l+Dg++++e+  e l++ + +v+q+ +lf+gt+ +n+ l  + +++ e+++rAak A  hd i++ p+gy++e+   g  lsGGq+qR+ iARa++k+P+iL+lDEatsaLD e Ek ++++l         t++++aHRL ti ++d+i+vl++G vve+GtH el++k+gaY +L
  MMETSP1174-20130828|21564_1   8 KYLSAVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAFFTMWdVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERAKILEYECHLDEardAMEMkARKLGIANGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTGSDG-FIA-MFMLQTGAQALGGTGPFIKAIKAAQVAAFDILAtIKRKPPIDA-RKG---GKKTEVVAGKIEFKNIGFTYpSRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKgAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALddllATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKL 490
                  678899****************9999877665555444555667788888888888877775538999999999999999*****************************************999988887654311134431579************************************999743.322.4557788899999999999999766555666650555555555.222...3333579*************667889***********************************************************************************87538999**********************************************************************9987652222678889*****************************************988 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.5   2.7   9.3e-86   6.7e-84     263     682 ..      58     491 ..      10     494 .. 0.75

  Alignments for each domain:
  == domain 1    score: 280.5 bits;  conditional E-value: 9.3e-86
    TIGR03797 263 allnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllel...egklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll.....aaaklslgsfla.fntafg.sflkavtslaetl....ievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrY.ekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas..ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaela 682
                   +  ++  +   + +alv+ + a +++  t +l+ ++++  + l +    +g +++ t+q ++ ++ l+   a+   +  +  e + +  +e+ka+++  +   l    +++t ++l++la +       +++   +  f+a f+   g ++l+++  + +++    +++++++ + +r  Pi     ++++  ++ + + G+ie +++ F+Y ++ g+ + ++++l++e+G+ va+vG+SGsGKSt ++l+  F  P++Gsvl DG dl++ldv+ +R+q+G+V Q+  l++g+i eni  g++  +t++e+  aa+ a   + i + P g  T +   gg+lSGGQ+QR+ iAra+++ P ill+DEATSALDN++ ++V ++l+ l    k t +viAHRL Ti+nad+i+vl++G vveqG++ eL++k+G++ +l 
  MMETSP1174-20130828|21564_1  58 VVSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSysrAGGIASETLQNMRTVAMLQCERAKILEYECHLDEARDA--MEMKARKLGIANGLLFGSGNIMTGVTLIYLAFMKAeqirnGESDTGSDGFIAmFMLQTGaQALGGTGPFIKAIkaaqVAAFDILATIKRKPPI-----DARKGGKKTEVVAGKIEFKNIGFTYpSRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKgaMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlathKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKLS 491
                  2223333455568888888888888888888888888777666555500055566666666666666666555555555555554444..555556655555555566666666666666655444555544555555688734444331334444433333310014455555555555555.....3445567778899************55689**********************************************************************************8877669*******************************************************************************999332244579***************************************9996 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4   1.3   1.1e-83   7.8e-82     283     691 ..      66     483 ..      52     486 .. 0.88

  Alignments for each domain:
  == domain 1    score: 273.4 bits;  conditional E-value: 1.1e-83
    TIGR03375 283 aliggplvlvplvavplvllvglllqkplsklaeeslresaqkn.allveslegletikalnaesrlqkkWeqvva.alakvslklrll...salltnlaalvqqlvsvavvvvGvyliaegeltmG..gLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpeee.kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                  ++  + ++lv +v++plv+  +++l  ++++ a+e l++s ++  ++  e+l+++ t+ +l+ e+    ++e  +  a   +++k+r+l   + ll  + ++++ ++ + +  + + +i +ge  +G  g iA+ +L + a   l+     +  ++ a++a   +   +k++   + +k   ++e + G+ie+kn+ f+Yp ++ ++  k+++l++++G  va++G  GsGKst  +l+ ++y+p++Gsvlldgvd++++d++ lr++ig+v+q++ Lf+Gt+ +Ni+lg++ a++ ee+ raa+ a +++f+ + pkG+d+ +g +G +LSgGQ+q +a+aRa++kdp+illLDE tsalDn+se+ + ++L +lla  ++T ++++Hr + ++ +d+i+vldkG +v +G++ e++e+
  MMETSP1174-20130828|21564_1  66 FFTMWDVALVSCVTAPLVVFGTFFL-SKITTEAAEWLSTSYSRAgGIASETLQNMRTVAMLQCERAKILEYECHLDeARDAMEMKARKLgiaNGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTGsdGFIAMFMLQTGAQ-ALGGTGPFIKAIKAAQVAAFDILATIKRKPPIDARKGGKKTEVVAGKIEFKNIGFTYPSRKgNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKgAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLAthKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEK 483
                  3445679999999999987655555.66777777777888877625789****************99999996665145667888887633256788999999********************9999778*******99775.589999999999999988777777777766678888888999***************98761566699*******************************************************************************99678999*****************************************************************************998889*********************************999987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4   1.1   1.1e-76   8.1e-75     318     566 ..     233     490 ..     165     494 .. 0.90

  Alignments for each domain:
  == domain 1    score: 250.4 bits;  conditional E-value: 1.1e-76
    TIGR01192 318 ereepadar....elknvkgavefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgreda.tdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakl 566
                  +r+ p dar    + + v g++ef++i f ++  +     +++ +e+ ag tva+vg +g+gk+t ++l++r ydp++g +l+dgvd++ ++ e lr+ i  v q+  l+  +i eni+lg+++a t eev  aak+a a+dfi +  kgydt vg +g +lsgg++qr+aiarai+k+  il+ldeatsald e+e  v++a+d l  +++rtt++iahrl+t+++ad ++ ld+g ++e+g+  eli+k+g + kl
  MMETSP1174-20130828|21564_1 233 KRKPPIDARkggkKTEVVAGKIEFKNIGFTYPSRKGNpiYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAmTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlaTHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKL 490
                  5556666641111456799************98765432579*********************************************************************************98578999*************************************************************************98744579*****************************************99987 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0067      0.48      80     206 ..       6     132 ..       3     148 .. 0.80
   2 !  234.5   0.3   8.3e-72     6e-70     288     529 .]     219     466 ..     214     466 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0067
    TIGR02857  80 rerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaea 206
                  r++ l++v+++   +     + el + ++e+++a+++ ++  + + v+ +   +  +++ ++  w  al+  +t+Pl+ +    + + + +aa+    + sr +g   + ++ + t+++++ ++a++
  MMETSP1174-20130828|21564_1   6 RRKYLSAVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERAKI 132
                  6666777777777777777778888888888888888888888887777777777778888999999************988888888888888888899999999999999999999998888775 PP

  == domain 2    score: 234.5 bits;  conditional E-value: 8.3e-72
    TIGR02857 288 aegvaaaealvevldaeeqpeaekapltaaass..slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdase.aevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivvl 529
                  ++++ aa ++ +++++++ + a k   +++     ++e++n+ ++y+ rk  p+ ke++l+ve+g++valvG SG+GKst ++l+ +f +p+ G++l++g++l+eld + +r+qi+ v+Q+P+lf gt+aeni+l++k+a + +ev++a++ a++++++ + p+g++te+G++g +LSgGq+qR+a+Ara+++d  +lllDE t++LD+e+e+ v++al++l+  ++rt+l++aHrl ++++adkivvl
  MMETSP1174-20130828|21564_1 219 KAAQVAAFDILATIKRKPPIDARKGGKKTEV-VagKIEFKNIGFTYPSRKgnPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAMTmEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLatHKRTTLVIAHRLTTIQNADKIVVL 466
                  4566666666667774444444444444444.347***********99998899*******************************************************99***************************9965277****************************************************************************9866889*******************87 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.1   3.4e-69   2.5e-67     465     706 ..     245     491 ..     218     493 .. 0.94

  Alignments for each domain:
  == domain 1    score: 225.8 bits;  conditional E-value: 3.4e-69
    TIGR01193 465 telenlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltek...kivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyasli 706
                  +++e + g+ie++++ + y    g+++ ++++l++++  +++lvG sGsGkst ++l+ +f++++ G +ll+g++lk++d + lrq i  + qeP++f+G+i en+ lg k  ++ ee+++a + a+ +d i ++p+Gy+te+ +++ ++sgGqkqr+a+ara++ d  +l+lde+ts ld   ek   + +++ll  +++t + +ahrl+  +++dki+vld+G ++eqG+h+el++++G y +l 
  MMETSP1174-20130828|21564_1 245 KKTEVVAGKIEFKNIGFTYPSrkGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKvvqQALDDLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKLS 491
                  56778899***********7533889************************************************************************************************************************************************************9997222568999**********************************************999885 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.7   4.8e+02     149     193 ..      79     122 ..      58     155 .. 0.49
   2 !  210.8   0.9   9.8e-65   7.1e-63     313     543 ..     250     483 ..     211     484 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.7
    TIGR01842 149 vgavvlvalallneaatkkklkeateasikanklldsalrnaevi 193
                  ++ +v++++ +l +++t+++ +  ++  ++a   ++++l+n   +
  MMETSP1174-20130828|21564_1  79 TAPLVVFGTFFLSKITTEAA-EWLSTSYSRAGGIASETLQNMRTV 122
                  22234444444444443333.333333334444444445554443 PP

  == domain 2    score: 210.8 bits;  conditional E-value: 9.8e-65
    TIGR01842 313 pegelevenvslvppeek.kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfee.nadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsllelvdkilvlkdGalkafGereevlkk 543
                  + g++e +n+ ++ p+ k +++ k+++++++aG ++a++G+sgsGks+ ++l+   + p +Gsv lDg+dlk+ d e l ++iG + q+  Lf+Gt+aeni   ++  ++ e+v  aak a++h++i+++pkGYdte+g++G +LsgGq+qRia+aRa+  dP++++LDe  + LD+e e+ + +al +l a +k+t++vi+hr + ++ +dki+vl++Ga+ + G+++e+++k
  MMETSP1174-20130828|21564_1 250 VAGKIEFKNIGFTYPSRKgNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKgAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLAtHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEK 483
                  56889999999888876626899******************************************************************************76544248899****************************************************************************97542799*******************************9998865 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.6   4.3e-57   3.1e-55     142     530 .]      59     454 ..      37     454 .. 0.80

  Alignments for each domain:
  == domain 1    score: 185.6 bits;  conditional E-value: 4.3e-57
    TIGR02868 142 laavaliallsvaaalvlaaallvalvvaplvslraarsae..qalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltrae.kraaaaealgaaltllaaGlavllallvgveavadgrlap...valAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda.tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                  ++ v ++++ ++ +alv  +++ + ++   ++s   + +ae  ++     + +a+++l+ ++ +a l+   a+    +   ++ r++++++ ++   a++l  +   +++G++++  + +  e++ +g+ +     ++A+++L + a  +al      ++++++++ aa  i ++++ k++ ++ +  ++ ++++   ++e++++ + yp  +   + k+++l++e+G  va+vG sG+GKst ++l+ ++ dp++G+v+ldgv++++l+ + +r+ + ++ q++ lF  t+ eN++l+++ a t ee+++a +++  +d + ++p+G+dt++g++g +lSGG++qR+a+ARa+++d  +llLDE t  LD e e+ + ++L    a+++rt+++++hrl
  MMETSP1174-20130828|21564_1  59 VSGVIFAFFTMWDVALVSCVTAPLVVFGTFFLSKITTEAAEwlSTSYSRAGGIASETLQNMRTVAMLQCERAKILEYECHLDEARDAMEMKaRKLGIANGLLFGSGNIMTGVTLIYLAFMKAEQIRNGESDTgsdGFIAMFMLQTGA--QALGGTGPFIKAIKAAQVAAFDILATIKRKPPIDARKGGKKTEVVA--GKIEFKNIGFTYPSRKGnpIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAmTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDdlLATHKRTTLVIAHRL 454
                  2334455555677777777777777777777777777777622233345667888888888888888887665544444444444444444044456777777888999*****999999998888777665122578888887654..6777777778888888889999998888887888877777766666..6778888888888765434************************************************************************************999899*******************************************************************9987766665334778999******86 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.2   1.6e+02    1046    1119 ..      11      87 ..       6     145 .. 0.62
   2 !  146.4   0.0   2.1e-45   1.5e-43    1281    1516 ..     250     490 ..     231     494 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.2
    TIGR00957 1046 hnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivi...llatplaaviilplallyf 1119
                    +vlr    +f+   + +l  +++ +l++v+  +++ +   ++ + +v++ vi     +    l++ +  pl +  +
  MMETSP1174-20130828|21564_1   11 SAVLRQEIGWFDVIVAEELPSKMAEKLQAVEAGVSNKVSEGVSFIAQVVSGVIFAfftMWDVALVSCVTAPLVVFGT 87  
                   56666666666666666666666666666666666666655555555666555431113334555555555555433 PP

  == domain 2    score: 146.4 bits;  conditional E-value: 2.1e-45
    TIGR00957 1281 ksgrvefrnyslryre.dldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmn..ldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysm 1516
                    +g++ef+n  + y   + + + ++ln+++e g  v +vg +g+gks+    + r  +   g + +dg+++ ++ +  lr ++ ++ q+p+lf+g++  n  l   +  + eev  a + a  +df+   p++ d e    g +ls gq+q + +ara+++   il+ldeat+a+d e+++++q ++   +  ++ t l iahrl ti +  +++vldkg v e ++ +el++++g ++ +
  MMETSP1174-20130828|21564_1  250 VAGKIEFKNIGFTYPSrKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENikLGKKGAMTMEEVERAAKSANAHDFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLatHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFKL 490 
                   579**********9651457899**************************9999*******************************************9877225678999*****************************************************************************998761156799**************************************99976 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.2   3.8e-43   2.8e-41      10     219 ..     273     482 ..     267     488 .. 0.89

  Alignments for each domain:
  == domain 1    score: 139.7 bits;  conditional E-value: 3.8e-43
    TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell.kideqerkekalealklv.dl.eeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                  ++++le+e G  + ++G sGsGkst v+l++r+ +P aG +l+dG+d+ e++ + l    r++i+mv q+  lf   ti +ni+lg + +  ++e er  k+ +a   + ++ ++y  +      +lsGG++qr+ +ara+  +P +ll+dea sald    + +q+ l +l +++++t + i+h l  +++ +d+iv+l +G +v  Gt  e+++
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWL----RQQIGMVSQEPILFT-GTIAENIKLGKKGAmTMEEVERAAKSANAHDFImEFpKGYDTEVgskGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLT-TIQNADKIVVLDKGAVVEQGTHTELIE 482
                  789************************************************99999....9*********99996.69********9965156667888887777765424555676544111568*************************************************************6.799******************999876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.1     3e-40   2.1e-38       3     233 ..     255     483 ..     253     487 .. 0.85

  Alignments for each domain:
  == domain 1    score: 129.9 bits;  conditional E-value: 3e-40
    TIGR00972   3 evknlklfygeke...alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwd...evkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                  e kn+ ++y +++     k++nle+++ + +al+G sG+Gkst ++ + r+ d       +G+vll+g d+ +  ldv  lr+++Gmv q+p  f+ +i +n+ +g +     + +e++++++++  +  +++      +++ +++ +LsGGq+qr++iara+  +P +lLlDe tsaLD ++ + +++ +++L   +k t +++ h +  +++ +dk++++ +G +ve+g+ ++++ek
  MMETSP1174-20130828|21564_1 255 EFKNIGFTYPSRKgnpIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPD-----AGSVLLDGVDLKE--LDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGA--MTMEEVERAAKSANAHDFIMEfpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlaTHKRTTLVIAHRLT-TIQNADKIVVLDKGAVVEQGTHTELIEK 483
                  56666666655443336799*********************************98.....9*********965..69*****************************8855..4566666666666665555541115667899999***********************************************9433457999999*997.56779****************9999876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.1     3e-38   2.2e-36       2     235 ..     254     482 ..     253     486 .. 0.86

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 3e-38
    TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldd 235
                  +e++n+  +yp+  g+ + k++nle++ G  va++G sG+Gkst ++ ++r+ +++ gs+ll+g +++   + +++ lr++igm++qe  l    t+ en+  g+ ga+++ + + +  ++   ++A + + ++  g +    ++  qLsGGq+qR+aiaRa++++p+++l DE +++LD++s k v ++l ++   ++ t++v  H++   +  ad+iv l +g++v +g+ +el +
  MMETSP1174-20130828|21564_1 254 IEFKNIGFTYPSrkGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLK---ELDVEWLRQQIGMVSQEPILF-TGTIAENIKLGKKGAMTMEE-VERAAKS---ANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQ-NADKIVVLDKGAVVEQGTHTELIE 482
                  789999999*972245689*********************************************9998...567888999********7665.67899***999888775444.4443333...4444444443338889999******************************************************************9876.59************9999988866 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.1   1.7e-37   1.2e-35       3     224 ..     255     485 ..     253     492 .. 0.87

  Alignments for each domain:
  == domain 1    score: 120.9 bits;  conditional E-value: 1.7e-37
    TIGR03864   3 eveglsfaygkrr...alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlry....haaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                  e +++ f+y +r+   + ++++l+v+ g+ vaL+G  G+Gkst ++l+ r y+ ++g++ + G+dl++  +e l+ ++G+v q++ l +  ++++n++       +++ + ra+ +++ ++ + ++  g      +k  +L+GG+++r+ iara++ +P++LLlDeat  LD es + +++++ +l ++++ + L   h +  ++++d++vvl+kG v+ qG+ +el ++++
  MMETSP1174-20130828|21564_1 255 EFKNIGFTYPSRKgnpIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRqQIGMVSQEPILFT-GTIAENIKLgkkgAMTMEEVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKG 485
                  56667777776653335789****************************************************99737*******99965.5899999873221335667777777777777776653356777888999****************************************************************************************99876 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.1     1e-35   7.2e-34      16     227 ..     272     489 ..     256     492 .. 0.84

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 1e-35
    TIGR00968  16 lddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir....kkdkakikakveell.elv.qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepatafv 227
                   ++++lev+ G  val+G sGsGkst ++++  + +pd+G +ll+G d  +++v+  +++iG+v q+  lf   t+ +ni +G +        ++a++ a+ ++++ e+  + +    +   qlsGGq+qr+a+ara+  +p +lllde  +ald +  k +++ l  l    k tt++++h    +++ ad+ivvl+kG + + g+ +e+ ++  + f 
  MMETSP1174-20130828|21564_1 272 YKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEwlRQQIGMVSQEPILFTG-TIAENIKLGKKGAmtmeEVERAAKSANAHDFImEFPkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLT-TIQNADKIVVLDKGAVVEQGTHTELIEKKGAYFK 489
                  5899*********************************************99887544899***********86.9*******9764421113444444444433320222122233345678*******************************************************99999765.7889********************9998877775 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.1   1.3e-35   9.6e-34      20     229 ..     271     481 ..     254     489 .. 0.83

  Alignments for each domain:
  == domain 1    score: 114.7 bits;  conditional E-value: 1.3e-35
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalv.......glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229
                    ++++l v +g+ + ++g+sg+gkst ++ v+ +  p  g+v++dg+dl +l   ++   r+qigm+ q   l+ + t+ +n+ l  + + t  e+++r  +   a         g      s   +lsggqkqr+aiara+  +p +ll deatsald  + + + + l ++  + + t l+i+h +  +++  d++ v+dkg ++e+gt +e++
  MMETSP1174-20130828|21564_1 271 IYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKEL---DVEWLRQQIGMVSQEPILF-TGTIAENIKLGKKGAMT-MEEVERAAKSANAHDfimefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELI 481
                  56899********************************************8777...566679********97665.579******98765544.3445544333332220011122666677788899**************************************************************9987.7999*************99986 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.1     3e-35   2.1e-33      10     205 ..     268     465 ..     257     466 .. 0.83

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 3e-35
    TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskk....ekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekadrvie 205
                   + i k+l+l++e+G +va+vG+sGsGKst + ++ ++ ++d g+v+l+g +   l ++   + lr+++g + q+  L  + t+ en++l+ k   + ++     k+ +  + + ++  g +++   k  +lsgG+kqR+a+ar+++k++ ++l DE t++LD++++++v + l++l + + +t +++ H  +  ++ad+++ 
  MMETSP1174-20130828|21564_1 268 GNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVD---L-KELDVEWLRQQIGMVSQEPILF-TGTIAENIKLGKKGAMTMEEveraAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlATHKRTTLVIAHRLTTIQNADKIVV 465
                  45799***********************************************...3.45678899**********8776.78********87766555541000344444444444422345667778899********************************************97256778999**************996 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.1     3e-35   2.2e-33      18     219 ..     269     471 ..     253     472 .. 0.86

  Alignments for each domain:
  == domain 1    score: 113.5 bits;  conditional E-value: 3e-35
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek...lsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  + + +++nle+e+g  v l G+sGsGk t + l+  +     G++ + g +lk+++   +  +r++iG++ q+  l++  t  +n++++ + + +   +++++++a+a++++ +   g + ++  k  +lsgGqkqr+aiara+++ P ++l de t+ald++s + v + l +l   +  t l+++h    ++ ad+iv +++G +
  MMETSP1174-20130828|21564_1 269 NPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELD---VEWLRQQIGMVSQEPILFTG-TIAENIKLGKKGAMTmeeVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAV 471
                  458899****************************************9999998765...6679**********999876.7889****987555500155556666777777765447788999********************************************************************************986 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.2   3.3e-35   2.4e-33       1     192 [.     287     484 ..     287     491 .. 0.85

  Alignments for each domain:
  == domain 1    score: 113.4 bits;  conditional E-value: 3.3e-35
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLk....mrkvpkaeikervkeaLelv.q.leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeeP 192
                  l+G+sGsGk+t ++l+  + ++d+G++lldg+d+ e   e  ++++++v q+  Lf   t++en+  g k    m++v++a  ++  ++ +    +  ++   +k  qlsGGq+qr+a+ara++k P iLLlDe+ saLD++  + +q+ l +l      t+++++h     +  +d+i+vl kG ++  g+  e+ e+ 
  MMETSP1174-20130828|21564_1 287 LVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEwlRQQIGMVSQEPILFT-GTIAENIKLGKKgamtMEEVERAAKSANAHDFIMEFpKgYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRL-TTIQNADKIVVLDKGAVVEQGTHTELIEKK 484
                  78********************************98766543889***********7.59*******9764322666666666666666543331224555678999**********************************************************9965.6899*****************999998865 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.1   5.5e-35     4e-33      20     225 ..     272     483 ..     265     489 .. 0.88

  Alignments for each domain:
  == domain 1    score: 112.9 bits;  conditional E-value: 5.5e-35
    TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknk.klkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225
                   k+++l+v++g  v+l+G sG Gk+t ++++  + ++daG++ll+g d+ +l ++  +++ G+v q   Lf   t+aeni+ G k+   +++ e+a++ +++ + +     g ++      gqlsGGq+qr+a+ara++  P +LLLDe  saLD    + +++ l +l    + tt++++h     ++ aD+ivv++kg +   gt +e+ e+
  MMETSP1174-20130828|21564_1 272 YKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEwlRQQIGMVSQEPILFTG-TIAENIKLGKKGAmTMEEVERAAKSANAHDFImefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRL-TTIQNADKIVVLDKGAVVEQGTHTELIEK 483
                  5789***********************************************9987547899**********86.9********997624566677777777777664334455556666789************************************************************76.57999******************999876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.3e-34   9.5e-33      15     210 ..     273     474 ..     257     477 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 1.3e-34
    TIGR01277  15 lefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtr..sapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqv......GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                   e++l+veaG  va++G sG+Gkst ++l+  f  p  G++ ++++d  +  +   ++ + m+ qe  lf+  t+++ni lG k ++ ++ v++    + a++       G +  +    ++lsGGq+qr+a+ar ++++  illlde  sald+   + +   +  l   +k+t l+++h+l   ++ a+++vv+++G +  +
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKEldVEWLRQQIGMVSQEPILFTG-TIAENIKLGKKGAMTMEEVERAAKSANAHDFimefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTT-IQNADKIVVLDKGAVVEQ 474
                  4789****************************************99876511567899************86.9********999999988877666555554322234477777888889***********************************9999999999999999999999****986.5679*********98766 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.1   2.5e-34   1.8e-32      20     239 ..     265     481 ..     252     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 2.5e-34
    TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellel.velr...sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaell 239
                   ++ +++ ++++l++e+G tval+G+sG+Gkst  +l+  +  P  G+v   G+dl++ld +    +r+++ +v q+ i       ++ e i+   +   +++e er a+ a+  +  +e++   + ++  +  qlsGGq qri+iara+  +P +++ldea s ld     ++ + l +l +    + l+i+h l  +q+ a++++vld+G +ve+ + +el+
  MMETSP1174-20130828|21564_1 265 SRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVE---WLRQQIGMVSQEPIL---FTGTIAENIKLGKKGAMTMEEVERAAKSANAHDFiMEFPkgyDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELI 481
                  566678999**************************************************987...57899****999764...345677777777777777777777666665554313333111456677789***************************************************************9997.8**************9988875 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.6   9.4e-34   6.8e-32      10     216 ..     273     485 ..     269     493 .. 0.85

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 9.4e-34
    TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellge....lyglpkkeaeeraeellelvelkeaad..kkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervg 216
                  +++nl+ve+g+ ++l+G  G GK+t ++++     Pd+G++ + G D+ + + + +R++ig+v q+  +    t  en++l  +    + +++++++ + a++ +  +   + ++   k +++sgG+++r+ +a+++i++P++l LDE t+ LD ++ +++ + +++l  + + t+l+ +h l  ++  ad++ ++dkG ++ ++t  eL e+ g
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKElDVEWLRQQIGMVSQEPILFTG-TIAENIKLGKKgamtMEEVERAAKSANAHDFIMEFPKGYDTEvgSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLAThKRTTLVIAHRLTTIQ-NADKIVVLDKGAVVEQGTHTELIEKKG 485
                  689********************************************97646779***********999876.6779999953221115566666777777777666655554432256789*********************************************988779**********9986.59*******************987655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.1   2.6e-33   1.9e-31       2     214 ..     254     469 ..     253     471 .. 0.81

  Alignments for each domain:
  == domain 1    score: 107.4 bits;  conditional E-value: 2.6e-33
    TIGR00960   2 ikfeqvskaykgaa.elaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaa..lekv.....GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathdenlveskrkrvltlskG 214
                  i+f+++  +y++ + ++  +++++++e G  v lvG sG+Gkst ++l+     p aG +++ g dl++l   +v  lr+qiG+v q+  +l   t+ +n+ l  + + ++ +e+e+ ++ a   + +     G      +   qlsgG++qr+aiara++++Pa+ll de t+ ld+e  + + + l+++      t lv +h  + +++   ++++l+kG
  MMETSP1174-20130828|21564_1 254 IEFKNIGFTYPSRKgNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKEL---DVEWLRQQIGMVSQEP-ILFTGTIAENIKLGKKGA-MTMEEVERAAKSAnaHDFImefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlATHKRTTLVIAHRLTTIQNA-DKIVVLDKG 469
                  89*********97636899**********************************************98766...799***********85.777889****99876532.22333333333221122222223377778888899***********************************999999999886245567888899999999876.567888888 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.2   3.5e-33   2.5e-31      14     222 ..     270     483 ..     254     488 .. 0.84

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 3.5e-33
    TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFPvlkem.lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldee 222
                   + ++++leve+g +va++G  g Gk+t ++ +   ++  +G++ l+g d+++l+ e   ++ i+ v+q   +f + t++en++lg + + +        +++  ++    FP   +     +gG+LsGGq+q +aiaRa++++P +llLDe t  +     k +++++++l ++++ + l++ + l   ++ ad+++vl++G vv++g+++el e+
  MMETSP1174-20130828|21564_1 270 PIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVE-WLRQQIGMVSQEPILF-TGTIAENIKLGKKGAMTMeeveraaKSANAHDFIMEFPKGYDTeVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELIEK 483
                  58899***********************************************99875.67899******87666.56*******98654433222333333333345556699876651679*****************************************************99999999999987655.****************99997665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.5   1.4e-32     1e-30      16     237 ..     272     483 ..     255     486 .. 0.89

  Alignments for each domain:
  == domain 1    score: 104.6 bits;  conditional E-value: 1.4e-32
    TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvte...apvlvkGvaraeaekravelldm..vGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                   ++l+lev+aG  val+G sGsGkst ++++  +   d Gs+ ++g  l  +              ++ +r++iGmv q+  lf   t+ +n+ +     + +  v+ra+  + a +++     G      +   qlsGGqkqr+aiara+   p +ll+de+tsald e  + v + l +l + ++ t l+++h++   ++ ad+++ +dkG +ve+G   e+ +k
  MMETSP1174-20130828|21564_1 272 YKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKEL-------------DVEWLRQQIGMVSQEPILFTG-TIAENIKLgkkGAMTMEEVERAAKSANAHDFIMEfpKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELIEK 483
                  5789****************************************88666554.............47899**************75.7889997622257888889999888888886543135888999999**************************************9999**********************98765.9****************9998875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.1   8.1e-33   5.8e-31       2     213 ..     254     469 ..     253     470 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 8.1e-33
    TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenval....alevrgkkeeeiqkrveevlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel.nkrGttvivathdeelvervkkrvlelekg 213
                  ie++++ ++y+  +g  + k+++l++e+g  + l+G sG+Gk+t ++l+     p++G+v ++g d+++l   ++  lR++ig+v q+  +l + t++en+ l    a++++  ++++ + + ++ +     g +  +  +  +lsgG +qR+aiaRai+++P++ll De t  lD+e ++ + + l +l  ++  t +v +h  + +++   +++ l+kg
  MMETSP1174-20130828|21564_1 254 IEFKNIGFTYPsrKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKEL---DVEWLRQQIGMVSQEP-ILFTGTIAENIKLgkkgAMTMEEVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlATHKRTTLVIAHRLTTIQNA-DKIVVLDKG 469
                  899*******96567899**********************************************998877...5889**********95.77789******984444566666666666666666555543477788889999************************************99999999886245667888888999988775.566667766 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.1   1.8e-32   1.3e-30       7     220 ..     259     472 ..     254     473 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 1.8e-32
    TIGR02211   7 ltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamP....lliskkskkeakerakellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  ++ +y + k    ++k+++le+e+g +va+vGssGsGkst + l+  + +p +G+vll+G +l++l       lr +++G++ q    l   t+ en+ +     + + + +++    +a++++ ++  g +  +  k ++lsGG++qr+aiara++++P+++l de t+ ld+++ k + + l +l  +++ + lv++h l+ ++++d+ + l +g ++
  MMETSP1174-20130828|21564_1 259 IGFTYPSRK-GNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDV---EWLR-QQIGMVSQEPI-LFTGTIAENIKLGkkgaMTMEEVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVV 472
                  555555444.34699************************************************99964...4566.68******765.556799****9962221344555555555566777777644789999*****************************************************9999999******************9999875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.1   2.5e-32   1.8e-30      19     231 ..     267     484 ..     250     491 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 2.5e-32
    TIGR03258  19 garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlr.arkqskaliaervadalklvql.....sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydap 231
                  +++ + ++l le+eaG  +al+G sGsGk+t +++v  f  +d G +l+ + dl  l     +++++++ q+  lf   ++ en+ +G + a  + + + a + a+a   +                qlsGGq+qr+a+ara++ +p +lllde  sald +  + v++ l  l       t l+++h r  ++  adki ++ +G ++++G+  +l ++ 
  MMETSP1174-20130828|21564_1 267 KGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVewLRQQIGMVSQEPILFTG-TIAENIKLGKKgAMTMEEVERAAKSANAHDFIMEfpkgyDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKR-TTLVIAH-RLTTIQNADKIVVLDKGAVVEQGTHTELIEKK 484
                  578899************************************************98764216889***********85.89*******874677888888888888887764312110222334567***********************************999999999998876655.5566777.5567899*****************99998765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.1   3.2e-32   2.3e-30      15     223 ..     274     484 ..     265     492 .. 0.87

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 3.2e-32
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee...rriseek....viel.LgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                  +++le+++   +al G+sGsGk++ ++l+     pd+g + ldg  l+    ++++   + ++g+v qe  LF+  +++en++ G k a++ e   r ++ ++    ++e+  g +  +  + g+LsGG kqR+ai+RA++ +P +Ll+De  +aLD+++ k +   L+ l a  k   l ++H l+ ++  ad++vvl++G v  +g+  e++++k
  MMETSP1174-20130828|21564_1 274 ELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLK----ELDVEWLRQQIGMVSQEPILFTG-TIAENIKLGKKGAMTMEeveRAAKSANahdfIMEFpKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELIEKK 484
                  57899999999*********************************9986....5778999**************96.89*******998766541113333333111155553489999***********************************************************************97.9*****************9998775 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.4   6.1e-30   4.4e-28       3     216 ..     273     483 ..     271     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 6.1e-30
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPll...tikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                  +++nl++  g  +alvG sGsGks++ + +  + d++    +G++lldg +l++l  +   ++i+++ q+P+     +     ++++   t++  e+ +k+a+  + + + +   +  ++ + +   +lsGG  qR+ ia a++ ++++l+ De t++lD  +++ v + l++l  ++  + l+i+h l+ +   ad+++v++kG +ve+gt +el+++
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPD----AGSVLLDGVDLKELdvEWLRQQIGMVSQEPILFTGTIAeniKLGKKGAMTMEEVERAAKSAN--AHDFIMEFP-KGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQ-NADKIVVLDKGAVVEQGTHTELIEK 483
                  689**********************999999999965....7***********9966667899********97555544100444555555555555444433..333333333.333444667789***************************************************************995.6******************999975 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.1   2.7e-28     2e-26      12     225 ..     267     481 ..     259     485 .. 0.87

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 2.7e-28
    TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarv..elssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                   g +i +++++++ aG+  +l+G  GsGkst ++l+     pdaG+v l+g+dlk l      +++ +v q+       ++ + + lG+    ++   + ++ ++ ++  + +   + ++    +   lsGG++qr+ +ara+ ++P +lllde t  ld ++   + +++ +l  +++ t++v  h l+  ++ +d++vvld+G vv  G+ +e++
  MMETSP1174-20130828|21564_1 267 KGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPI-LFTGTIAENIKLGKKGAMTMEEVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLaTHKRTTLVIAHRLTT-IQNADKIVVLDKGAVVEQGTHTELI 481
                  677889999999***********************************************************965.5677999*******999999999988888888887776511344444455678***********************************99999999997625678899999***86.6789***************998865 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3       1.4     1e+02     498     527 ..      68      95 ..      44     137 .. 0.62
   2 !   89.8   0.1   4.8e-28   3.4e-26      44     255 ..     275     481 ..     246     488 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.4
    TIGR00955 498 estslalsvappvvipfllfgGfflnvdsv 527
                  +  +  ++++  v++p+++fg ffl+  + 
  MMETSP1174-20130828|21564_1  68 TMWD--VALVSCVTAPLVVFGTFFLSKITT 95 
                  2222..344566777888888888775444 PP

  == domain 2    score: 89.8 bits;  conditional E-value: 4.8e-28
    TIGR00955  44 vsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqddl.fiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkk.laqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                     +++ G+ +A++GsSG+GK+T ++ +      +    g+vll+G   ++++ + +r+  + v q+ + f +t++ + +L  +  + +++ + +  k +  ++ +   +  k  dt +g++g    lSgG+++R+a+a  +++dP +L++DE Ts LD  s + v ++L + la++ +t ++  H  +    ++ dki++l++G vv +G+ +e++
  MMETSP1174-20130828|21564_1 275 LNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDA---GSVLLDGvdlKELDVEWLRQQIGMVSQEPIlFTGTIAENIKLGKKGAMTMEE-VERAAKSANAHDFIM--EFPKGYDTEVGSKGG--QLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDlLATHKRTTLVIAHRLT--TIQNADKIVVLDKGAVVEQGTHTELI 481
                  5557899******************99988777765...459****33335677899*******999862567777777899999999999.8888********995..678********9885..8************************************9999***984599999999999*866..57999***************999876 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.6   2.6e+02     208     281 ..      61     130 ..      21     177 .. 0.60
   2 !   40.0   0.0   2.7e-13     2e-11    1214    1344 ..     250     384 ..     238     387 .. 0.88
   3 !   49.9   0.0   2.8e-16     2e-14     529     640 ..     374     486 ..     364     494 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.6
    TIGR01271 208 qvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweea 281
                   v++    +w++  a + c  + l++++ +   l+k  ++  +  +   s+   i+se ++n+++v +   e a
  MMETSP1174-20130828|21564_1  61 GVIFAFFTMWDV--ALVSCVTAPLVVFGTF--FLSKITTEAAEWLSTSYSRAGGIASETLQNMRTVAMLQCERA 130
                  234444445554..3345666667776665..577777777777777777777778888888877776666554 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 2.7e-13
    TIGR01271 1214 sggqmtvkdltakyte.agravlqdlsfsveagqrvgllgrtgsgkstllsallrllste.geiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknld..pyeqysdeeiwkvaeevglksvieqfpdkld 1344
                     g+++ k++   y + +g+ + ++l + veag +v l+g +gsgkst +  + r+ + + g + +dgv  + + ++  r+ +g++ q  ++++gt+  n+        + ee+ + a+    +  i +fp+  d
  MMETSP1174-20130828|21564_1  250 VAGKIEFKNIGFTYPSrKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDaGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKlgKKGAMTMEEVERAAKSANAHDFIMEFPKGYD 384 
                   579999999999996538**************************************9976599***********************************9976115566889999999999999999999997655 PP

  == domain 3    score: 49.9 bits;  conditional E-value: 2.8e-16
    TIGR01271 529 ediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan..ktrilvtsklehlkkadkilllhegscyfygtfselqakkpd 640
                  + i  +++  +t +g  g  lsggq+ ri++ara+ kd  + lld   s ld  +ek + ++ l  lla+  +t ++++ +l  +++adki++l +g+    gt +el +kk  
  MMETSP1174-20130828|21564_1 374 DFIMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEK-VVQQALDDLLAThkRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIEKKGA 486
                  5577899999999999999***********************************999.567889999986225778999*****************************999865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.3   9.1e-27   6.6e-25       2     197 ..     273     475 ..     272     483 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 9.1e-27
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm....vvfqnysllpwltvrenialavdavlrdlskserr.eiveehielv....glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                  k+++le++ g  ++l+g sg gkst ++l+  +  p +g+v l+g +++e   + +     +  +  +l   t+ eni l  + +++  ++ er  +  + h  ++    g  +    + +qlsgg kqr+aiara+   p +lllde   ald  + + +q+ l +++  ++ t+l+++h +  ++  +d++v+l +g   + g
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLrqqiGMVSQEPILFTGTIAENIKLGKKGAMTM-EEVERAaKSANAHDFIMefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLT-TIQNADKIVVLDKGAVVEQG 475
                  789******************************************9999987764322223444556666789*******98876543.33333303333333333112245555667889*************************************************************96.6889*******999877666 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.2   1.1e-26   8.2e-25       7     183 ..     271     451 ..     266     456 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 1.1e-26
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpln.lGlseaeverrvrealaavdi..sgleerpth...llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG..ktvvis 183
                  + k+lnl+ve g+++al+G+ G+Gkst ++ ++    P +G vlldG +l  +  ++  lr+++++v q+p   lf+ ++ e++ +g +  + ++e e  ++  +a + +    +g++    +   +lsgG+k+r+aia a++  p +lllde t+ ld + ++ + ++l+ l +    +t+vi+
  MMETSP1174-20130828|21564_1 271 IYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDL--KELDVEWLRQQIGMVSQEP--ILFTGTIAENIKLGKKGaMTMEEVERAAKSANAHDFIMEfpKGYDTEVGSkggQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHkrTTLVIA 451
                  7899*******************************************766..57899999*********99..6*************8752566666666666666665532235676655432338********************************************99765411455554 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.9   2.1e-25   1.5e-23      19     228 ..     273     479 ..     265     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 2.1e-25
    TIGR03411  19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                  ++l+l+ve+g   +++G+ G+Gk+t + ++     pd+Gsvl++g dl++l+ +   r+ ig   q+p +f   t++en++l  k   ++ ++ +a  s+++++ i e  +  g ++++ +k g+Ls Gqkq++ i+  ++++p++lllDe ++ + +e ++ + + l +l  +++r+ +v+ h ++ +++ a+k+ vl +G+v+ +G+  e
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVE-WLRQQIGMVSQEPILFT-GTIAENIKLGKKGAMTMEEVERAAKSANAHDFIMEFPK--GYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlaTHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTE 479
                  789*********************************************999875.56788********9997.59*******98877777666666666666666655544..688999*************************************9999999999999983345679**********987.67889***********9765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   7.1e-24   5.1e-22      19     226 ..     271     484 ..     254     487 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 7.1e-24
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips......llefar.leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargk.tilltthlmeeaerlcdrlcvleagrkiaegrpdalideq 226
                  + ++l + + ag    l+g  g+gkst  +lv  +  pd g + + g +     +   r +ig+v+q   l    t+ en+   g+   ++  e+e +  s      ++ef +  ++    +  +lsgg k+r+++ara+i+dp +l+lde t+ ld  + +++ + l  lla  k t l+ +h +   +   d+++vl++g  + +g    li+++
  MMETSP1174-20130828|21564_1 271 IYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLkELDVEWLRQQIGMVSQEPIL-FTGTIAENIK-LGKKGAMTMEEVERAAKSanahdfIMEFPKgYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKrTTLVIAHRLTTIQ-NADKIVVLDKGAVVEQGTHTELIEKK 484
                  678999************************************9887766514579999*********8777.5569999975.79999********9887633333356665535667777889*************************************************87647788889887765.58************99*999999875 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.1   1.9e-23   1.4e-21      22     207 ..     270     452 ..     257     468 .. 0.73

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.9e-23
    TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsa..levvaepllel.GvereearakakellarlniperL...WslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak..argaaligifh 207
                  p+ ke++leveaG  val G+sG+Gkst ++ + + Y p++g++l+      v    ++e +v  +R ++ig vsq         a  + + ++ ++++  ver++  a+a++++  +  p+             sGG kqR+ iara+i+d  iLLLde t++Ld+   kvv + ++++   +++++l+ i h
  MMETSP1174-20130828|21564_1 270 PIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDG----V---DLKELDVEWLR-QQIGMVSQEPILFTGTIAenIKLGKKGAMTMeEVERAAKSANAHDFIMEF--PKGYdteVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLatHKRTTLV-IAH 452
                  67899***************************************9876....5...45666777777.89******654444444401444455555441344444445555555555..443310023344689****************************************999965114566665.555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   2.5e-23   1.8e-21      42     255 ..     274     483 ..     268     489 .. 0.85

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 2.5e-23
    TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGle.lsGvakaerrkrveeqlelv.....glaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlk 255
                  + +l+ve G  + l+G sGsGks+ ++ v ++     G+vl+      vd+ ++d + lr    +++ mv q+  l+   t++en+ +G      + + er  + ++  +++     g +     k g+lsGG +qr+ +ara+  +  ill+de  sald    + +q  l +l ++ k+t + ++h l   ++  ++i ++++G +v +gt  e++ k
  MMETSP1174-20130828|21564_1 274 ELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLD----GVDLKELDVEWLR----QQIGMVSQEPILF-TGTIAENIKLGKKgAMTMEEVERAAKSANAHDFImefpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLT-TIQNADKIVVLDKGAVVEQGTHTELIEK 483
                  679*************************************985....5899999999887....48*****997665.689********7523456666666665555554322222445555678899*************************************************************7.68889*****************999876 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.9   5.1e-23   3.7e-21      13     230 ..     269     478 ..     263     487 .. 0.78

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 5.1e-23
    TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                  ++i k+lnlev++G+++a++G+ GsGkst ++ +   + y   +G++ l+g dl el+ve   r+ + +  q p   +G  ++++      a++ ++ e++      +k  +++  ++e+++ + +    +G   sGG k+r  i +  + +P + +LDe+ s lD ++ k+v + +++l  + ++++l+i+h  rl    + d++ vl +G +v++G  +
  MMETSP1174-20130828|21564_1 269 NPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVE--RFYDPDAGSVLLDGVDLKELDVE-WLRQQIGMVSQEPILFTGTIAENIKLGKKGAMTMEEVERA------AKSANAHDFIMEFPKGYDTEVGSKGgqLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLAThKRTTLVIAH--RLTTIQNADKIVVLDKGAVVEQGTHT 478
                  6899*************************998875..6788899**************96.5677788899********8776654333333332222222......2333333334455555544444444348******************************************99765549999****9..66777789***************753 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   5.3e-23   3.8e-21      19     221 ..     273     482 ..     254     493 .. 0.82

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 5.3e-23
    TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylef....saalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.a.kdktvilsthimqevealcdrviiinkGkivadkkleelka 221
                  +e+ +e+e G  v ++G  G+Gkst ++++  +  +d+Gsv ++g d  +  +e  r++iG + +   l+    + e +++      ++ +++  ++  + +++i +   G  +e   k g+ls G +qr+ +a+a++ dP +l+lde t+ ld +    +++ + ++ a +++t ++ +h +  ++   d++++++kG +v + + +el +
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEwLRQQIGMVSQEPILFTG-TIAENIKLgkkgAMTMEEVERAAKSANAHDFIMEFpkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlAtHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELIE 482
                  678999******************************************99777747999**99876666655.56666655221134566777777777888888764349*******************************************98777777666654251456899999****9997.69************999998854 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.7e-05    0.0063      12      60 ..     268     314 ..     254     334 .. 0.82
   2 !   56.1   0.5   7.1e-18   5.1e-16     168     259 ..     393     483 ..     359     493 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.7e-05
    TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii 60 
                  g  + k+++le+e G  + ++G sG+Gks  ++l+     y+p+ G ++
  MMETSP1174-20130828|21564_1 268 GNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERF--YDPDAGSVL 314
                  56678999999999999999999999999999998755..668888876 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 7.1e-18
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvak 259
                  +lsGG+kqr+ +ar ++k+p +ll de t +ld ++ k+v +al +    ++ + ++ +h    i++ +dk ++l+kG++ve+G+ +e+++k
  MMETSP1174-20130828|21564_1 393 QLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGTHTELIEK 483
                  79********************************************988887777777777777765.8*******************9987 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.2   4.4e-21   3.2e-19       9     189 ..     265     456 ..     261     465 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 4.4e-21
    TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgl.......edlpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG.ivllathqdlg 189
                  +R ++ ++++l++e+ aG +++++G+ G+GK+t + ++     p++G+v l++ +l+e   e+ ++   +  ++ +  + +++En+k  ++   + + +ve a ++++ +++        d+ v     qLs Gqk+R+a+ar +++   + +LDE t alD+e+ ++++++l++ la+   ++l+ +h    
  MMETSP1174-20130828|21564_1 265 SRKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIKLGKKGAMTME-EVERAAKSANAHDFimefpkgYDTEVgskgGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKrTTLVIAHRLTT 456
                  69999*****************************************************9999887777777778888899*******9887665333.44444444443332111111133333222279***************************************999999876543144444555444 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.3   3.7e-20   2.7e-18      13     207 ..     269     476 ..     254     486 .. 0.76

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 3.7e-20
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdl....kkiGsliesPalyenltarenlkv....rtlllglpesr....i.eevlkiv.dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiiseGklkyekk 207
                  + + ++++l+v+  +  +l+G  G+Gkst ++l+  +  +++G++lldg ++   d+    ++iG + ++P l+   t  en+k+      ++++++++       + +++   + +++   k +q+s G kqr+ ia a++++P +l+lde t  ld    + +++ +   + ++  t ++ +h l+ +++ ad+i ++ +G +  ++ 
  MMETSP1174-20130828|21564_1 269 NPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVewlrQQIGMVSQEPILFTG-TIAENIKLgkkgAMTMEEVERAAksanAhDFIMEFPkGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDdLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVEQGT 476
                  457899*******************************************999888863333589*99999999986.666899873322345666654331111202233333123444567899*********************************98877776655414455566777778*****986.9********99887765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     2e-06   0.00014     323     388 ..     254     321 ..     241     336 .. 0.81
   2 !   43.9   0.0   3.7e-14   2.7e-12     160     255 ..     392     489 ..     357     494 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2e-06
    TIGR03719 323 ievenlskafgdk...lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvkla 388
                  ie++n+  ++ ++    ++++l++++ +g+ v ++G+ G+Gkst ++l+    +pd+G++ + + v+l 
  MMETSP1174-20130828|21564_1 254 IEFKNIGFTYPSRkgnPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLL-DGVDLK 321
                  5667776666554222599****************************************976.455555 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 3.7e-14
    TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaW....lekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrle 255
                   +lsGG+k+r+a++r ++++P +lllde t  ld es +     l+  l+ +k t ++++h    ++n a+ i+ ld+G  +  +g +++ +e+k + ++
  MMETSP1174-20130828|21564_1 392 GQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVvqqaLDDLLATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVE-QGTHTELIEKKGAYFK 489
                  58**********************************9766111155566778999******7777776.678999****9876.8999999999977655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.4   3.5e-20   2.5e-18       1     201 [.     277     482 ..     277     489 .. 0.77

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 3.5e-20
    TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvl.sGragliGllrrpkkadfaavadalerv.klteladrpv....GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfee.lagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                  l+v++G  ++l+G  G+Gk+t ++ +  +  + +Gsv ++g        ++ ++ q+  +  + pi  ++t+  + + g+ G +   +++  a  a+a + + ++ +  d  v    G+lsGGq+qr+ +ara+  +p +lllde  + ld+ s++ + + + + la+++++ l+ +h l+   ++ + vvl  g vv +g+ ++l +
  MMETSP1174-20130828|21564_1 277 LEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGV--DLKELDVEWLRQQIGMVSQEPILFTGTIAeNIKLGKKGAMTMEEVERAAKSANAHDFImEFPKGYDTEVgskgGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDlLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQGTHTELIE 482
                  6899*************************************6..455677888888888888888877776652335555555555555544444444443213344444444222279**************************************9999987258889999*******9876666666777899999999988865 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.2   4.2e-20     3e-18      18     221 ..     273     473 ..     254     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 4.2e-20
    TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkl.dasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdGqhva 221
                  ++++l+++aG  v+l G  G+Gkst ++++   y      G +l +g +lk  ++    r+ i ++ qe +l    +++eni lG++ ++    ++ +a    a++++ e     +++v    ++l +Gq+q + ia+a+ k   +l+lde +++l ++  +++ + + dl  ++  + + i+h+l  ++  +d+i v+  G  v 
  MMETSP1174-20130828|21564_1 273 KELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPD--AGSVLLDGVDLKELDVE-WLRQQIGMVSQEPILFTG-TIAENIKLGKKGAMTMEEVERAAKSANAHDFIMEFPKgYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLlATHKRTTLVIAHRLTTIQN-ADKIVVLDKGAVVE 473
                  6789***************************999765..69***********9995.56889*******999876.8*********988888889999********999985414556666799**********************************999999999999725688999********9986.78888888887664 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   7.2e-20   5.2e-18     334     550 ..     251     474 ..     243     478 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 7.2e-20
    TIGR01194 334 vdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde...kkqa.sldqattylsrleledkvkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                   + +e+k++ ++y++ ++   ++   ++l ++ G  v +vG  G Gkst ++l+  +y p  G +lldG  + +   +  r+    v  +  lf   +  +    kk a ++++ ++  +  + +d +     +y t       +ls Gq++r+a+  a +++  +lllde ++  d    +v  + l   l  + +t lvi+h     + ad+++ l +G vv++
  MMETSP1174-20130828|21564_1 251 AGKIEFKNIGFTYPSRKGNPIYK--ELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLKELDVEWLRQQIGMVSQEPILFTGTIAENIklgKKGAmTMEEVERAAKSANAHDFIMEFPKGYDTevgskGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDLLATHKRTTLVIAHRLTTIQNADKIVVLDKGAVVEQ 474
                  578999********999987665..79*******************************************************************999885532212333144555555555555555555567776522111569**************************************98887777788899**************************986 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0     7e-18   5.1e-16     941    1150 ..     267     483 ..     246     495 .] 0.77

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 7e-18
    TIGR01257  941 sgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilfyaq..lkgrsweeaqlemea....mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflknc 1150
                    g p    ln+ +      a++g  g+gk+t++ ++  +  p +g+vl+ g d+ e +++ +rq +gm+ q  ilf   t+ae i +  +  +  +  e a    +a    m    g       +  +lsgg ++++++a a++ d  +++lde ts +d  s + + + l  l     rt ++ +h +   +   d+i ++ +g +   gt   l + 
  MMETSP1174-20130828|21564_1  267 KGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVDLkELDVEWLRQQIGMVSQEPILFT-GTIAENIKLGKKgaMTMEEVERAAKSANAhdfiMEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALddLLATHKRTTLVIAHRLTTIQ-NADKIVVLDKGAVVEQGTHTELIEK 483 
                   68999999****999999***********************************84678899***************7.599**998754311333333333333332222144457888888888999***********************************988765542222344577777888887655.5788888888888888887666554 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0     1e-14   7.3e-13      22     224 ..     276     480 ..     254     492 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 1e-14
    TIGR02323  22 sf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGaniger.llavgarhyGkiraaak.wlekveida.ari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rv 224
                  ++ +  G  +++vG sGsGkst ++ +     +daG+v  +  +       l e +    lr + G+v q+p  +  +++    +g++  +++ +       a+a+ ++ +      + +  k  ++sGG +qr+ iar+++  p ++++ e t  l     +++   l  l+   + ++++++h l+ +   a++++v+ +G vve+G   ++
  MMETSP1174-20130828|21564_1 276 NLeVEAGTTVALVGSSGSGKSTAVQLVERFYDPDAGSVLLDGVD-------LKELDVE-WLRQQIGMVSQEPILFTGTIAENIKLGKKgAMTMEEVERAAKSANAHdFIMEFPKGYdTEVgsKGGQLSGGQKQRIAIARAIIKDPAILLLdEATSALDNESEKVVqqALDDLLATHKRTTLVIAHrLTTI-QNADKIVVLDKGAVVEQGTHtEL 480
                  555678999*****************************988766.......4555544.56889*********9999999999999873455544444444444444666543322123356899*********************999999*****666666555588999999999999999956655.5799**************75244 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   5.5e-14   3.9e-12     448     640 ..     249     454 ..     229     470 .. 0.77

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 5.5e-14
    TIGR00954 448 aqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg.........glltkp.eegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLed.llereggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake....vgitllsvshrk 640
                      +i f ni    P  +g+ + +eL++ev+ G+ + ++G  G GKs    ++  ++ P  g           l ++  ++++  v q P + +gt+ + i   +      +  ++ +++e+  +  + +d ++e   g+d+ v      LsgG+kqRia+AR +   P   +LDE+tsA+  + E+ + +++ +     + t l ++hr 
  MMETSP1174-20130828|21564_1 249 VVAGKIEFKNIGFTYPsrKGNPIYKELNLEVEAGTTVALVGSSGSGKSTAVQLVERFYdPDAGsvlldgvdlKELDVEwLRQQIGMVSQEPILFTGTIAENIKLGK------KGAMTMEEVERAAKSANAHDfIMEFPKGYDTeVGSKGGQLSGGQKQRIAIARAIIKDPAILLLDEATSALDNESEKVVQQALDDllatHKRTTLVIAHRL 454
                  556789**********88899*********************************99994555589999775533333325799***************99985433......22345556666666666655277889999974777789********************************999998776665441100334445555555 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.2   2.6e-13   1.9e-11     761     984 ..     255     473 ..     225     491 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 2.6e-13
    TIGR00956 761 ewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv...ttGvitegdrlvngrkldssFqR.siGYvqqqDlHletstvreaLrfsAy.lRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrk.ladaGqailCtiHqPsailleeFDrLLllqkGGktvY 984
                  e++++ ++ + +k++  + +e++  v+ G+  AL+G sG Gk t ++ L eR    + G +      v+ ++ld  + R +iG v q+ + l t t+ e ++         +ev ++ k     + i  +e+ +  d  vG  G  L+  q++r++i+  ++  P  +l lDe ts LD  +  ++ + l   la + ++ l   H    + +++ D++++l kG  +v 
  MMETSP1174-20130828|21564_1 255 EFKNIGFTYPSRKGN-PIYKELNLEVEAGTTVALVGSSGSGKSTAVQ-LVERFydpDAGSVL--LDGVDLKELDVEWLRqQIGMVSQEPI-LFTGTIAENIKLGKKgAMTMEEVERAAKSANAHDFI--MEFPKGYDTEVGSKGGQLSGGQKQRIAIARAIIKDP-AILLLDEATSALDNESEKVVQQALDDlLATHKRTTLVIAHR--LTTIQNADKIVVLDKG-AVVE 473
                  567777777766654.5788888889999999999999999999876.45554222344444..22256677887776626899999988.567899999988754133457788888887777764..788999999999999999999999999999999999.77889999999999999999999887357888999988887..4567888999999998.4554 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0033      0.24     623     651 ..     272     300 ..     254     307 .. 0.88
   2 !   23.4   0.2   4.4e-08   3.2e-06     820     903 ..     385     466 ..     345     481 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0033
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                   k++++++  g+ +++ G sgsGkst ++
  MMETSP1174-20130828|21564_1 272 YKELNLEVEAGTTVALVGSSGSGKSTAVQ 300
                  48999********************9875 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 4.4e-08
    TIGR00630 820 iklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv.dkGntvvviehnldviksaDyiidl 903
                   ++G +   LsGG  qr+ +a+ + k     ++ +lDe t  L  +  k + + l+ l   +  t +vi h l  i++aD i+ l
  MMETSP1174-20130828|21564_1 385 TEVGSKGGQLSGGQKQRIAIARAIIK---DPAILLLDEATSALDNESEKVVQQALDDLLaTHKRTTLVIAHRLTTIQNADKIVVL 466
                  468999999************99986...579*************999999999998761567899***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.36u 0.20s 00:00:01.56 Elapsed: 00:00:00.71
# Mc/sec: 920.21
//
Query:       MMETSP1174-20130828|21571_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 777.27
//
Query:       MMETSP1174-20130828|21572_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1174-20130828|21573_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-17   59.9   6.0      6e-17   59.4   4.2    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   4.2   1.5e-20     6e-17     212     374 ..      67     238 ..      63     246 .. 0.91

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 1.5e-20
    TIGR00797 212 alkrllklglplllrvilvsflvtllallvarlG...stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpk.....rakevarvalklglllglvlaiililfrefiarlftkdpevlelaaill.ifvaltqpsdalafvldGvlrGagdtkvaaivtvvsaw 374
                   l +++k +  ++lr++++++ ++ +++++ ++    +++lAahqv+ q+  +l+++ + +aiA++ +v+++l+ + +      +a+ +a ++l +g + g ++a+ l++      rl+t++p+v e+a  l+  ++a +q++ +l fv dG+l+G+ d+k+ a++++ + +
  MMETSP1174-20130828|21573_1  67 ELTPFVKASGATILRTLSLQLFLASTTAFLGHSSvvpEVDLAAHQVLKQLYIVLSFAMDAIAIAAQQMVASSLSDKATTsqaeaEARVTADRILLWGACAGCLFALALLFEGDAAVRLLTSSPDVREAATPLVgRVLAPLQVVSSLVFVGDGILQGSQDFKYEAVAMIAASL 238
                  57789***************************999999***********************************9886532222267889999*************************************998747889****************************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 964.78
//
Query:       MMETSP1174-20130828|21574_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   23.5   0.0    9.8e-06   23.0   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00034   18.0   0.1    0.00048   17.5   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0057   13.8   0.0       0.01   13.0   0.0    1.4  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
     0.0067   13.9   0.0     0.0098   13.4   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
  ------ inclusion threshold ------
      0.011   13.8   0.0      0.021   12.9   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.017   12.3   0.0      0.025   11.7   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.4e-08   9.8e-06     161     212 ..      80     131 ..      70     163 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.4e-08
    TIGR00406 161 kkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllq 212
                   +++++G GSG+ ++ a++lgaa+vv  D D+ +++ + +Nle N++  l++
  MMETSP1174-20130828|21574_1  80 STILELGGGSGLAGMCAMRLGAARVVITDGDATSLDLTNQNLEANGLAGLVE 131
                  6799*****************************************9887665 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     7e-07   0.00048      89     151 ..      79     146 ..      62     163 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7e-07
    TIGR03534  89 klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl.....leal 151
                  + ++l+lg GsG  +++ a +l  a+v+ +D ++++l+++++N++++gl+  ve+ +  +     l+a+
  MMETSP1174-20130828|21574_1  79 NSTILELGGGSGLAGMC-AMRLGAARVVITDGDATSLDLTNQNLEANGLAGlVEARRLLWgvgehLSAF 146
                  568*********87765.6778**************************998766665555444434444 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.5e-05      0.01     121     175 ..      78     131 ..      44     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
    TIGR03533 121 evkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrve 175
                    +++l+l  GsG la ++a +   a+v ++D  + +L+++++n+e  +l+  ve
  MMETSP1174-20130828|21574_1  78 LNSTILELGGGSG-LAGMCAMRLGAARVVITDGDATSLDLTNQNLEANGLAGLVE 131
                  34689********.78899****************************99987776 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-05    0.0098      42      97 ..      67     123 ..      48     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
    TIGR00095  42 slFn.ilrkeivgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlst 97 
                  +l +  +++ i ++ +L+l  Gsg  g+ A+  ga++vv+ + d+++     +Nl++
  MMETSP1174-20130828|21574_1  67 ALSSpHIQPTILNSTILELGGGSGLAGMCAMRLGAARVVITDGDATSLDLTNQNLEA 123
                  55555799*****************************************99999987 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.1e-05     0.021      20      68 ..      79     126 ..      61     150 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.1e-05
    TIGR02469  20 gdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgv 68 
                  ++++l+ G+G+G  ++ a+rl    rv+  + ++ +l+l+++Nl+++g+
  MMETSP1174-20130828|21574_1  79 NSTILELGGGSGLAGMCAMRLG-AARVVITDGDATSLDLTNQNLEANGL 126
                  569*************999875.5599*****************99865 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05     0.025      47     157 ..      76     197 ..      55     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
    TIGR01983  47 kleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk..........kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinrt 157
                  ++ + ++l++G G+Gl      rlga+ v+  D  ++ ++  ++  ++++l+           +  +l++ +e +++    fDv++a +vl   + +  +  ++ +ll  +g+ fl  + r 
  MMETSP1174-20130828|21574_1  76 TILNSTILELGGGSGLAGMCAMRLGAArVVITDGDATSLDLTNQNLEANGLAglvearrllwGVGEHLSAFKESEAAPVCGFDVIIAGDVLYKEDLPLLLFDTVKALLAANGQCFLCHVPRA 197
                  567889**********99999999988776667666777777776666666665555433345555666667776676778**********999999999999999*********9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1183.35
//
Query:       MMETSP1174-20130828|21575_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|21577_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-11   40.0   1.5    5.6e-11   39.6   1.1    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      2e-08   30.4   2.2    2.6e-08   30.1   1.5    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.013   11.5   3.4      0.015   11.3   2.4    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
      0.034   11.7   1.3      0.069   10.7   0.9    1.6  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   1.1   5.4e-14   5.6e-11     117     214 ..      18     116 ..       7     157 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 5.4e-14
    TIGR00990 117 nlseeerkkyaaklkekGnkayrnkdfdkaielyskalllkedPvyysnraac...ynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                    s+e++ + a++l+ kGn++++ k +++a+ ly  +  lke P  y  ++ c   +   +++   +e + +a+ l+p  vka  rr  a   l + ++a+
  MMETSP1174-20130828|21577_1  18 AKSQEKQTETAVALRLKGNRYFKAKRYQEALGLYMDS--LKERPYCYVTLTNCcqaHLKRTEWADALEFADRAIYLEPSTVKARTRRVVALHALDRLREAI 116
                  4478889999************************997..58999999888887222444689*************************************97 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   1.5   2.5e-11   2.6e-08     753     877 ..      12     136 ..       8     152 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.5e-11
    TIGR02917 753 aeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdnavvLNNLAwlalerkd.pkAleyAekAlklapnqpailDTlGwvlvekgeakealkllrkAvklapeaaairyhl 877
                  a+A+k++ ++++++ + av++ + +++y + k++++A   Y + +k+ p   v+L N     l+r + + Ale+A +A  l+p   +      ++l    + +ea++ ++kA +l+pe+ +i   l
  MMETSP1174-20130828|21577_1  12 ADAEKRA-KSQEKQTETAVALRLKGNRYFKAKRYQEALGLYMDSLKERPYCYVTLTNCCQAHLKRTEwADALEFADRAIYLEPSTVKARTRRVVALHALDRLREAIEEAQKAHELSPEDTEIDAQL 136
                  5666665.568888999999999********************************************9*****************99987788888888999******************997655 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   1.4e-05     0.015      98     198 ..      40     139 ..      12     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.4e-05
    TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveil 198
                  ++k++++Al ly ++l+  P     l+    + +   + ++Al+ ++++   +ps+++ ++ +  +l a+++  +a++ +q+a +l+P+++e+ ++l   l
  MMETSP1174-20130828|21577_1  40 KAKRYQEALGLYMDSLKERPYCYVTLTNCCQAHLKRTEWADALEFADRAIYLEPSTVKARTRRVVALHALDRLREAIEEAQKAHELSPEDTEIDAQLKA-L 139
                  689***************************************************************************************988666543.3 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   6.8e-05     0.069      28     122 ..      38     132 ..      16     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.8e-05
    TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakyw.lgLaaclqal...keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                   +++++y+eA+ l    ++    e  y  + L  c+qa     e+++A+++ ++a +l++++ ++  ++ + l al++ +eA +  + a e++ e++e 
  MMETSP1174-20130828|21577_1  38 YFKAKRYQEALGL----YMDSLKERPYCyVTLTNCCQAHlkrTEWADALEFADRAIYLEPSTVKARTRRVVALHALDRLREAIEEAQKAHELSPEDTEI 132
                  5677777777654....444444444541578899987422278999**********************************999999999999987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1174-20130828|21579_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1174-20130828|21583_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 837.84
//
Query:       MMETSP1174-20130828|21585_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|21586_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 387.17
//
Query:       MMETSP1174-20130828|21587_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 648.95
//
Query:       MMETSP1174-20130828|21588_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|21590_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.2   0.0      0.023   12.1   0.0    1.0  1  TIGR00338 serB: phosphoserine phosphatase SerB


Domain annotation for each model (and alignments):
>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.7e-06     0.023     122     171 ..       6      55 ..       1      58 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.7e-06
    TIGR00338 122 LgldavfaNrLeve.dgkltGkvegeivdesakaktllkllekegislekt 171
                  L++   f  +L+ + d + tG+v+++iv ++ k k  ++ ++ eg++l+++
  MMETSP1174-20130828|21590_1   6 LDVVSYFEGKLNADaDQATTGDVSTPIVTAKRKVKQ-CEQCKAEGVPLKRC 55 
                  444446888999998999*************88776.56688899988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 276.35
//
Query:       MMETSP1174-20130828|21591_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1174-20130828|21592_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 187.42
//
Query:       MMETSP1174-20130828|21594_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-10   36.4   0.0    6.4e-10   35.9   0.0    1.4  1  TIGR00066 g_glut_trans: gamma-glutamyltransferase


Domain annotation for each model (and alignments):
>> TIGR00066  g_glut_trans: gamma-glutamyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.6e-13   6.4e-10      94     147 ..      26      79 ..      12     140 .] 0.77

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.6e-13
    TIGR00066  94 kklAvgvPGtvagleaalkkyGqlslkdliePaiklaekGfaisealaetleky 147
                  + l v+vPG  ag+  +  ++G+l+l+ +++Pai++a +Gfa+s+++a +  + 
  MMETSP1174-20130828|21594_1  26 GPLSVTVPGAAAGWCDLNTRFGKLPLATILKPAIEYATQGFAVSKVIASEWASS 79 
                  4689****************************************9998765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 684.39
//
Query:       MMETSP1174-20130828|21599_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1384.28
//
Query:       MMETSP1174-20130828|21604_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1293.49
//
Query:       MMETSP1174-20130828|21606_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|21605_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1174-20130828|21607_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|21612_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|21614_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 689.75
//
Query:       MMETSP1174-20130828|21613_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 1115.17
//
Query:       MMETSP1174-20130828|21615_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.0   4.8      0.067   10.9   3.4    1.6  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.4   1.6e-05     0.067      23     142 ..      16     144 ..       2     146 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.6e-05
    TIGR01071  23 gsGkGktsg.rGqkGqkaRsg..gkvrlgFEGGqtPlyrrlPkrgfsnk.lkkelevvnvekleklfkdgevvtlekLl....ekklikkknkl.vKvlgkgk.lekkltvkaekvsksakakiekaggs 142
                  +sG+G+ +  r + G +  +g  ++ r  F+      + ++  r f+   ++ +  +vn+ekl +l+ +  v + +k +    ++ +i+ ++    Kvlgkg+  + ++ vka+ ++k a++ki++agg 
  MMETSP1174-20130828|21615_1  16 SSGHGRVGKhRNHPGGRGNAGgqHHHRILFDKYHPGYFGKVGMRHFHVLkNRYHAPIVNLEKLWSLAPEE-VFESAKKAagsgKAPVIDVTKCGyFKVLGKGDlPNVPVIVKAKFFTKLAEKKIKAAGGA 144
                  5666655421334444433332244556666655556666777777766677888899999999998884.333333221111345666554445********5589*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.68
# Mc/sec: 289.21
//
Query:       MMETSP1174-20130828|21622_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 346.94
//
Query:       MMETSP1174-20130828|21623_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 203.06
//
Query:       MMETSP1174-20130828|21627_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-65  216.6   0.0    8.3e-65  216.3   0.0    1.0  1  TIGR01086 fucA: L-fuculose phosphate aldolase
    1.8e-16   58.0   0.0    1.1e-13   48.9   0.0    2.1  2  TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase
    6.3e-10   36.5   0.0    1.6e-09   35.2   0.0    1.8  1  TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase
    0.00023   18.4   0.0     0.0029   14.8   0.0    2.3  3  TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase


Domain annotation for each model (and alignments):
>> TIGR01086  fucA: L-fuculose phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.3   0.0   8.1e-68   8.3e-65       4     210 ..      53     259 ..      50     263 .. 0.96

  Alignments for each domain:
  == domain 1    score: 216.3 bits;  conditional E-value: 8.1e-68
    TIGR01086   4 elsqkiidtclemtrlglnqgtagnvsvrykdgmlitptgipyeklteehivyvdgngkfeegklpssewrfhlavyqsrpdanavvhnhaihcaavsilnksipaihymvaasgadeipcvpyatfgsrklaeyvaegikes.kaillqhhgliacevnlekalwlahevevladlylktlaitdevpvlseeelavvlekfktygl 210
                  +l+ ++i     m   gln+gt+gnvsvr   g+litp+g+pyekl +++iv+vd+ g +  + lpssewr+h  +y s+p a+avvh h  hc+a+s l+ +ipa hym+ ++g++eipc+ y tfgs+ l++ v  ++ +s +a l++ hg+i+ +  l+ka+ la+ ve la  y+    i+++  +l+++e++ +l kfktyg 
  MMETSP1174-20130828|21627_1  53 KLCGEVIRVSKLMNSSGLNEGTSGNVSVRVPGGFLITPSGMPYEKLVPNDIVFVDDGGGYYGNLLPSSEWRLHYDIYISKPSAEAVVHAHPDHCTALSALHDPIPAFHYMIGVAGGKEIPCARYETFGSQALSDSVLDALGDStRACLMANHGMICFNSSLDKAFGLAKSVEQLARQYIIARQIGNP-KILDDNEMDNILAKFKTYGK 259
                  5667788888889999****************************************************************************************************************************876389**************************************987.69****************96 PP

>> TIGR03328  salvage_mtnB: methylthioribulose-1-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   1.1e-16   1.1e-13       4      98 ..      61     152 ..      58     161 .. 0.91
   2 !    7.2   0.0   0.00066      0.67     138     175 ..     182     217 ..     170     236 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.1e-16
    TIGR03328   4 lgrelykrgWvpgtggnlslrldesellitaSGkdKerleeedllvvdlegkpvespkkkpsaetllhlaiyretpeagavlHtHsveatllsrl 98 
                  + + ++++g  +gt+gn+s+r  +  +lit+SG   e+l ++d+++vd  g +    ++ ps+e  lh  iy ++p+a+av+H H  + t ls+l
  MMETSP1174-20130828|21627_1  61 VSKLMNSSGLNEGTSGNVSVR-VPGGFLITPSGMPYEKLVPNDIVFVDDGGGYYG--NLLPSSEWRLHYDIYISKPSAEAVVHAHPDHCTALSAL 152
                  66677889999**********.5789***********************999988..5****************************999999987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00066
    TIGR03328 138 aeLaeevekaleespealgvLirgHGlyvwGkdleeak 175
                  ++L+++v +al   +++ ++L+++HG+ ++ ++l++a 
  MMETSP1174-20130828|21627_1 182 QALSDSVLDAL--GDSTRACLMANHGMICFNSSLDKAF 217
                  78999999999..78899*************9999885 PP

>> TIGR00760  araD: L-ribulose-5-phosphate 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.5e-12   1.6e-09      17     130 ..      66     176 ..      50     263 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.5e-12
    TIGR00760  17 pkhklvtftwgnvsaidrekelvvikpsgveydeltaddlvvvdlegevvegdkkpssdtpthlalykafpeiggivhthsrhatiwaqagkdipalgtthadyfygaipctre 130
                  +   l   t gnvs   r  + ++i psg+ y++l  +d+v vd       g++ pss+   h  +y   p+   +vh+h  h t+ +     ipa+    +     +ipc+r 
  MMETSP1174-20130828|21627_1  66 NSSGLNEGTSGNVSV--RVPGGFLITPSGMPYEKLVPNDIVFVDDG-GGYYGNLLPSSEWRLHYDIYISKPSAEAVVHAHPDHCTALSALHDPIPAFHYMIGVAGGKEIPCARY 176
                  555566668899985..788999********************965.5578*********************************************999999999999999985 PP

>> TIGR02624  rhamnu_1P_ald: rhamnulose-1-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.69   7.1e+02      12      36 ..      57      81 ..      53      83 .. 0.83
   2 ?    0.5   0.0     0.066        67     108     152 ..     113     153 ..     103     156 .. 0.77
   3 !   14.8   0.0   2.8e-06    0.0029     202     263 ..     196     256 ..     180     262 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.69
    TIGR02624 12 emikttedlyrkGwdernGGnislr 36
                 e+i+ ++ +   G +e   Gn+s+r
  MMETSP1174-20130828|21627_1 57 EVIRVSKLMNSSGLNEGTSGNVSVR 81
                 6677888888999999999**9987 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.066
    TIGR02624 108 tdgglptselpahflshiarlkvdpenrvimhchatnlialtftl 152
                    + lp+se   h+  +i +    p+   ++h+h+ +  al+  +
  MMETSP1174-20130828|21627_1 113 YGNLLPSSEWRLHYDIYISK----PSAEAVVHAHPDHCTALSALH 153
                  55567888888888777764....6667899****9999998665 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 2.8e-06
    TIGR02624 202 srlvlwphhGifgaGesldevfGlietaekaaevytkvlsqggvkqtisdedlialaerfdv 263
                  +r  l + hG+    +sld++fGl +++e+ a+ y + ++  g  + + d+++ ++ ++f+ 
  MMETSP1174-20130828|21627_1 196 TRACLMANHGMICFNSSLDKAFGLAKSVEQLARQYIIARQI-GNPKILDDNEMDNILAKFKT 256
                  5678899**************************99766555.55668999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|21626_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-06   22.2  35.3    7.4e-06   21.8  24.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.01   11.4  35.3      0.014   10.9  24.5    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.23    8.7  11.3       0.15    9.3   6.7    1.4  1  TIGR01006 polys_exp_MPA1: polysaccharide export protein, MPA1 family
       0.84    7.4  11.0      0.044   11.5   0.6    3.0  4  TIGR02978 phageshock_pspC: phage shock protein C


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  24.5   7.3e-09   7.4e-06     685     900 ..      16     234 ..       5     245 .. 0.44

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7.3e-09
    TIGR02168 685 eeeieeleekiaelekelkelekel.eeleeeleklrkeleelerkls...elkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerlesl.ekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreelee 900
                  e++++++ + +++l +++k++ ++  +++++ +++ +++ +e++ kl+   + +++ e+   e e+++++++++++ l++ +++ +e +++le  ee   ++e e+++  +ei++  ++++al+e++s+l  e+  lkee +++ er+e   e+++++l++ le++++ + ++ +e++++ea+ e++ ++ +++++e++++ +++  +e+ +a+l + +++
  MMETSP1174-20130828|21626_1  16 EKKLDNAIDGVEKLAQQIKDVHTASaTDVNDGVSTSEATGDETDAKLAvavAVEAQXESTLLELEAMSQKAREAQEVLNNTKAKLSEVQNKLEVVEESSIKSEGELTKKIKEIAEKDTQITALTEQVSALAGEVVLLKEETKTQLERMEGAsEQKHRKLQRALEDTKKMLVDKDAEMAEAEAKRERQATDAKQAQDEINKKHAAQ--MEQMMATLAHTQQQ 234
                  3333444444444444444433322022333333333333333333321113344444444444555555555555555555555555555555555555555555555555555555555555555555555555555555555555543133334445555555555555555555555555555555555555555444433..33333333333222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  24.5   1.3e-05     0.014     250     473 ..      19     236 ..       9     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.3e-05
    TIGR02169 250 leeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkae.qkleqlkedlekaekelr 473
                  l + ++++e+ ++++++   + + ++++     e+ g+e  +++   +  ++a+ e++  ++++  +++++a+e l++++a+++++++++e +e++  + + e +k  +e++e+ ++  +l +++ +++ e   l+ee+k + e++e + e+++      ++l+  l+ +++ l +  ae++++e+k +  +++++++++ei+k+   ++eq+ + l++ +++++
  MMETSP1174-20130828|21626_1  19 LDNAIDGVEKLAQQIKDVHTASATDVNDGVSTSEATGDETDAKLAVAV-AVEAQXESTLLELEAMSQKAREAQEVLNNTKAKLSEVQNKLEVVEESSIKSEGELTKKIKEIAEKDTQITALTEQVSALAGEVVLLKEETKTQLERMEGASEQKH------RKLQRALEDTKKMLVDKDAEMAEAEAKRERQATDAKQAQDEINKKHaAQMEQMMATLAHTQQQKE 236
                  445566666666666666666666666666666676777777776665.478888888888888888888888888888888888888888888888778888888888888888888888888888888888888877777777776655433......23344445555666777777888888888888888888888876541577777777777777664 PP

>> TIGR01006  polys_exp_MPA1: polysaccharide export protein, MPA1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.7   0.00015      0.15      74     191 ..      27     146 ..      16     169 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00015
    TIGR01006  74 iqlvndykeiil..SpdvLdkVskdl.kldlsekelskkvtvtvqadtrvisisVkskspeeaekiAnklrevasekiakvlkVedVtiLeeAkaattpvsPkiklnllvglllGlvvalv 191
                   +l++++k++ +  + dv d Vs+ +   d ++++l+  v v  q ++ +++++  s++ +ea+ + n+++   se   k+  Ve+ +i +e + +++ +    +  + +++l+  v al+
  MMETSP1174-20130828|21626_1  27 EKLAQQIKDVHTasATDVNDGVSTSEaTGDETDAKLAVAVAVEAQXESTLLELEAMSQKAREAQEVLNNTKAKLSEVQNKLEVVEESSIKSEGELTKK-IKEIAEKDTQITALTEQVSALA 146
                  56777777775411468999998755156999*********************************************************999987654.3333344444444444444443 PP

>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.64   6.6e+02      87     115 ..      17      45 ..       8      49 .. 0.75
   2 ?   11.5   0.6   4.3e-05     0.044      73     120 ..      80     127 ..      61     128 .. 0.85
   3 ?   -0.4   1.5      0.21   2.2e+02      67     105 ..     161     197 ..     136     216 .. 0.60
   4 ?   -0.1   0.4      0.17   1.7e+02      63      99 ..     191     224 ..     181     236 .. 0.42

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.64
    TIGR02978  87 revkeelrrleerlrevEryvtssefkle 115
                  +++++ ++ +e+  +++ ++ t s+ +++
  MMETSP1174-20130828|21626_1  17 KKLDNAIDGVEKLAQQIKDVHTASATDVN 45 
                  56778888888888888888888877776 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 4.3e-05
    TIGR02978  73 kkfwqagetpkealrevkeelrrleerlrevEryvtssefklerefrk 120
                  + + q++++++e+l++ k++l++++++l+ vE+    se +l +++++
  MMETSP1174-20130828|21626_1  80 EAMSQKAREAQEVLNNTKAKLSEVQNKLEVVEESSIKSEGELTKKIKE 127
                  457799999**************************9999999999975 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.21
    TIGR02978  67 eeeevkkkfwqagetpkealrevkeelrrleerlrevEr 105
                  e+  ++    q+ ++ ++al++ k+ l + +  ++e E+
  MMETSP1174-20130828|21626_1 161 ER--MEGASEQKHRKLQRALEDTKKMLVDKDAEMAEAEA 197
                  22..23444455555556666666666665555555554 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.17
    TIGR02978  63 eelyeeeevkkkfwqagetpkealrevkee.lrrleer 99 
                  e++ +e++      +++ ++k+a +e++++  +++e+ 
  MMETSP1174-20130828|21626_1 191 EMAEAEAK----RERQATDAKQAQDEINKKhAAQMEQM 224
                  33333333....33333334444444433202333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       788  (0.192101); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 754.98
//
Query:       MMETSP1174-20130828|21630_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1174-20130828|21629_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 1556.37
//
Query:       MMETSP1174-20130828|21631_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   71.3   0.0    2.3e-20   71.0   0.0    1.0  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    3.6e-14   50.5   0.0    4.3e-14   50.2   0.0    1.0  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    0.00051   17.0   0.0    0.00061   16.8   0.0    1.1  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.7e-23   2.3e-20      58     139 ..      24     106 ..      10     113 .. 0.93

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 1.7e-23
    TIGR00742  58 alqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqng.nfGaclmanadlvadivkamkeaveiPvtvktriGidelds 139
                   lqlgg+dp+ l  + +++   gy einlnvGcPs +   +  +Ga lm ++  v  +++am  a+  Pv+vk riGi+e+ s
  MMETSP1174-20130828|21631_1  24 VLQLGGNDPSLLGIATEMGTMAGYSEINLNVGCPSIKTGGSpCYGAALMRDPSRVRSLLEAMAAATTLPVSVKCRIGIHERMS 106
                  59***********************************9765267**********************************99865 PP

>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   3.2e-17   4.3e-14      65     145 ..      23     104 ..       9     110 .. 0.91

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 3.2e-17
    TIGR00737  65 isvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkk.gaGsallkepeliekivkavveavevPVTvKiRiGwdee 145
                    +Ql g dp +++ a ++   +g + i lN+GCP  k   +   G+al+++p+++ ++++a+++a+  PV vK RiG+ e 
  MMETSP1174-20130828|21631_1  23 HVLQLGGNDPSLLGIATEMGTMAGYSEINLNVGCPSIKTGGSpCYGAALMRDPSRVRSLLEAMAAATTLPVSVKCRIGIHER 104
                  568*********************************999876256*********************************9875 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.4e-07   0.00061     119     166 ..      47      99 ..      25     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4.4e-07
    TIGR01037 119 vdaleLnvsCPhvkg.....aGieiGqdpelsaevvkavkekvdkPvlakLsP 166
                     ++Lnv CP +k+     +G+++ +dp+ + ++ +a+ +++  Pv++k   
  MMETSP1174-20130828|21631_1  47 YSEINLNVGCPSIKTggspcYGAALMRDPSRVRSLLEAMAAATTLPVSVKCRI 99 
                  45789*********844555679999***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|21636_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|21634_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1174-20130828|21637_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|21638_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 897.53
//
Query:       MMETSP1174-20130828|21633_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-08   29.7   1.7    8.2e-08   29.7   1.2    1.6  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   1.2     2e-11   8.2e-08      15     126 ..      27     138 ..      21     155 .. 0.70
   2 ?   -1.3   0.8     0.051   2.1e+02     100     141 ..     153     196 ..     127     216 .. 0.48

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 2e-11
    TIGR00601  15 idlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptp.satpas..vaekksaaPasaveeessaee 126
                  ++++   tv++l+ek+ +      ++ a+++++  Gk L+D+ t+++ +i+++  +++m +  + ++ +++ P+  p+   + +p s+tp    +a  ++ aP    +e ss++ 
  MMETSP1174-20130828|21633_1  27 LQVDRCATVSQLREKVSQASQ---IPSAEIRILGKGKTLEDEWTLANLGINQGSKLMIMKASGRPTTKETEVPTEVPSKHRANAPaSTTPKIveTALLPEVAPGKNSTELSSSPS 138
                  6778889*********99998...***********************************98888777677777776665554444333333200333345555544444333332 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.051
    TIGR00601 100 satpasvaekksaaPasaveeessaee..eatatalesedtsae 141
                  ++ p+++a+++ + P+sa +  ++ ++     +t  + e+++++
  MMETSP1174-20130828|21633_1 153 TKLPPVLAHDAGSNPTSAPKRRKTKPRykDLISTIASGESSQDP 196
                  44555666666666655544433332200222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1174-20130828|21641_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 985.20
//
Query:       MMETSP1174-20130828|21645_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 252.98
//
Query:       MMETSP1174-20130828|21648_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-20   68.8   0.0      3e-09   34.2   0.0    2.2  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.4e-12   44.1   0.0    5.6e-07   26.9   0.0    2.4  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.7e-09   34.5   0.0    9.8e-08   28.7   0.0    2.2  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.2e-07   27.4   0.0    0.00051   17.5   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.2e-05   22.9   0.0      0.013   13.0   0.0    2.3  2  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.2e-11     1e-08     201     295 ..     170     260 ..     157     266 .. 0.84
   2 !   34.2   0.0   3.7e-12     3e-09     111     194 ..     290     373 ..     274     375 .] 0.88

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.2e-11
    TIGR01622 201 raakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                    a+a+  +  + p   + ++L+vGnl   i E++L++   p   + + +   D+e+G+  G GFi+    + a +A  ++ G ++ GR++k+++
  MMETSP1174-20130828|21648_1 170 EEAAATSAKVTNNP--DGITRLFVGNLSWKIDEKSLQKALAPN-VVTHFKWLTDQESGKFYGSGFIEMATPDDAGRAV-AMAGSDVLGRPVKITY 260
                  44443333333445..7889********************995.68899999************************96.7*************98 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 3.7e-12
    TIGR01622 111 elteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqa 194
                   + ++    r  f+ +l+  +++  ++EFF +++++  +r +  r S+  kG a++EF       +A + +G +l ++P+ +  
  MMETSP1174-20130828|21648_1 290 AMSDKPSGCRKLFAGNLDYEITDEKMYEFFGEAAEITAIRYLTHRDSGDFKGCAFLEFASTRDADVAAKKNGALLSDRPIRLDW 373
                  566666667899********************************************************************8765 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.9e-06    0.0032     286     360 ..     187     260 ..     149     266 .. 0.70
   2 !   26.9   0.0   6.8e-10   5.6e-07       3      77 ..     301     374 ..     299     375 .] 0.92

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.9e-06
    TIGR01628 286 vNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyval 360
                  + l+v Nl  ++d+++L++   +   +t  k ++d e++k  g GF+  +++++A +Av  + g  + g+P+ +++
  MMETSP1174-20130828|21648_1 187 TRLFVGNLSWKIDEKSLQKALAPN-VVTHFKWLTDqESGKFYGSGFIEMATPDDAGRAVA-MAGSDVLGRPVKITY 260
                  457777777777777777777764.56666766665677777777777777777777774.666666667766665 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.8e-10
    TIGR01628   3 lyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmws 77 
                  l++G+Ld ++t++++ye F e+++++++R      +    g a+  f +  dA+ A   +n   l ++piRl w+
  MMETSP1174-20130828|21648_1 301 LFAGNLDYEITDEKMYEFFGEAAEITAIRYLTHRDSGDFKGCAFLEFASTRDADVAAK-KNGALLSDRPIRLDWT 374
                  89***************************99988899999***************975.57778********996 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0041       3.3     284     319 ..     174     209 ..     154     231 .. 0.75
   2 !   28.7   0.0   1.2e-10   9.8e-08     228     356 ..     231     358 ..     223     370 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0041
    TIGR01642 284 eklvnsktvldsedklyignLPldlkddqvkeLLes 319
                    +++++  +d+  +l++gnL  +++++ ++  L +
  MMETSP1174-20130828|21648_1 174 ATSAKVTNNPDGITRLFVGNLSWKIDEKSLQKALAP 209
                  35689999*****************99988877765 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 1.2e-10
    TIGR01642 228 flEfrtveeatlalaldsiiyenvslkir....RphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAia 356
                  f+E++t+++a  a+a+ +    + ++ki     Rp d  P+ +  p+    +s+    a    v+    + +  kl+ gnL ++++d+++ e   +  ++ a   +  ++ G  KG aF e+  + ++d+A +
  MMETSP1174-20130828|21648_1 231 FIEMATPDDAGRAVAMAGSDVLGRPVKITysptRPGDVWPPVA--PGEEGDRSSSRPSAP---VAMSDKPSGCRKLFAGNLDYEITDEKMYEFFGEAAEITAIRYLTHRDSGDFKGCAFLEFASTRDADVAAK 358
                  9***************************555559***998874..444444444444443...44566788999********************************************************965 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.3e-07   0.00051     225     339 ..     146     255 ..      32     265 .. 0.75
   2 !    8.1   0.0   0.00045      0.37     272     337 ..     301     366 ..     281     373 .. 0.54

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.3e-07
    TIGR01661 225 vlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrv 339
                  + +k++ ++    ++a ++ + +  ++a+++    a++++++     +fv nls + de+ lq       v+  k + d ++ k  G gf+ m+  d+a  a++ + G  + +r 
  MMETSP1174-20130828|21648_1 146 SYSKKRARKGEQADEAGKKIGEKIEEAAATS----AKVTNNPDGITRLFVGNLSWKIDEKSLQKALAPNVVTHFKWLTDQESGKFYGSGFIEMATPDDAGRAVA-MAGSDVLGRP 255
                  3334444444444455555555555555444....444444444457****************999999******************************99985.5565555555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00045
    TIGR01661 272 ifvynlspd.tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgn 337
                  +f  nl  + tde++  +fg+   +++++ +   ++   kG +f+  +   +a +a +  nG  l++
  MMETSP1174-20130828|21648_1 301 LFAGNLDYEiTDEKMYEFFGEAAEITAIRYLTHRDSGDFKGCAFLEFASTRDADVAAK-KNGALLSD 366
                  4444554443455555555555555555555555555555555555555555555433.35555544 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00065      0.53     135     187 ..     213     266 ..     169     268 .. 0.77
   2 !   13.0   0.0   1.5e-05     0.013     195     251 ..     300     356 ..     291     370 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00065
    TIGR01659 135 ntcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy..arpg 187
                     + + d  +g  +g +f+++a+  d+ ra+  + g  v  + +k++y  +rpg
  MMETSP1174-20130828|21648_1 213 THFKWLTDQESGKFYGSGFIEMATPDDAGRAVA-MAGSDVLGRPVKITYspTRPG 266
                  4456788999*********************96.678888888888887335777 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.5e-05
    TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqea 251
                   l+  nl   itd+++   fg   +i     l  + +g  +g af+ f    +a+ a
  MMETSP1174-20130828|21648_1 300 KLFAGNLDYEITDEKMYEFFGEAAEITAIRYLTHRDSGDFKGCAFLEFASTRDADVA 356
                  577888888888888888888888888888888888888888888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1499.88
//
Query:       MMETSP1174-20130828|21651_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   21.5   0.0    2.4e-05   21.2   0.0    1.1  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    0.00024   18.0   0.0    0.00025   18.0   0.0    1.0  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
     0.0034   14.5   0.1     0.0041   14.3   0.0    1.0  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
     0.0034   14.0   0.0     0.0036   13.9   0.0    1.0  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
     0.0059   13.3   0.0     0.0061   13.3   0.0    1.0  1  TIGR01141 hisC: histidinol-phosphate transaminase
  ------ inclusion threshold ------
      0.015   12.1   0.0      0.016   12.0   0.0    1.0  1  TIGR02006 IscS: cysteine desulfurase IscS


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.5e-08   2.4e-05      62     100 ..      29      66 ..      22      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.5e-08
    TIGR01979  62 eayeeaRekvakfinAksaeeivftkgateslNlvaasl 100
                  +  +eaR+ va+++nA+ a+++vf+++a+e++N + +sl
  MMETSP1174-20130828|21651_1  29 DDLWEARTAVASYVNAE-AKDVVFVENASEGMNAILQSL 66 
                  56789***********9.78*************998876 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.6e-07   0.00025      45      87 ..      30      71 ..      12      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.6e-07
    TIGR01977 45 eveetReelaklfnveekakvvFtnnattalNialkGilkegk 87
                  + e+R+++a+++n+e k +vvF +na +++N +l+ +l +g+
  MMETSP1174-20130828|21651_1 30 DLWEARTAVASYVNAEAK-DVVFVENASEGMNAILQSLLVSGS 71
                 5679***********998.9***************99887665 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     6e-06    0.0041      46      79 ..      33      66 ..      25      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6e-06
    TIGR03235 46 karkqvaealgadkeeviftsgatesnnlallGl 79
                 +ar  va+ ++a+ ++v+f   a e  n +l  l
  MMETSP1174-20130828|21651_1 33 EARTAVASYVNAEAKDVVFVENASEGMNAILQSL 66
                 79**************************999766 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.3e-06    0.0036      42      81 ..      29      68 ..      12      72 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.3e-06
    TIGR03402 42 kaveeaRekvakllgaeeeeiiftsggtesdntaiksala 81
                   + eaR+ va+ ++ae ++++f   ++e+ n+ ++s l 
  MMETSP1174-20130828|21651_1 29 DDLWEARTAVASYVNAEAKDVVFVENASEGMNAILQSLLV 68
                 56789***************************99999875 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.9e-06    0.0061      56     108 ..      30      82 ..       3      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.9e-06
    TIGR01141  56 qalelkealakylgveeenillgnGsdelielliraflepgdavlvleptysm 108
                  +  e ++a+a+y++ e++++++ + + e+++++++++l +g   l+l+ +y m
  MMETSP1174-20130828|21651_1  30 DLWEARTAVASYVNAEAKDVVFVENASEGMNAILQSLLVSGSGLLYLDLAYFM 82 
                  556899********************************************988 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05     0.016      51      82 ..      33      64 ..      20      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
    TIGR02006 51 narkevaeligadsreivftsGatesdnlaik 82
                 +ar+ va+ ++a+++++vf   a+e  n +++
  MMETSP1174-20130828|21651_1 33 EARTAVASYVNAEAKDVVFVENASEGMNAILQ 64
                 79***********************9997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|21655_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.1   0.0      0.016   11.8   0.0    1.1  1  TIGR02814 pfaD_fam: PfaD family protein
      0.035   11.4   0.1      0.043   11.1   0.1    1.2  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase


Domain annotation for each model (and alignments):
>> TIGR02814  pfaD_fam: PfaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.7e-06     0.016     400     440 ..      53      93 ..      22      96 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.7e-06
    TIGR02814 400 ihcGPalGafnewvkgteLedwrnrkvdeiaekllegaaal 440
                  i +G a Ga+n+++  t+L+ + +rkv+++ ++l+  aa++
  MMETSP1174-20130828|21655_1  53 IGTGYATGAMNALIVATSLDFYGRRKVVRVWSELMALAAVV 93 
                  67899*******************************99986 PP

>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.1e-05     0.043      88     124 ..      55      91 ..      21     113 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
    TIGR00128  88 aGHsLGEysAlvaagaldFedalklvkkRgelmqeav 124
                   G++ G ++Al++a  ldF    k+v+  +elm+ a+
  MMETSP1174-20130828|21655_1  55 TGYATGAMNALIVATSLDFYGRRKVVRVWSELMALAA 91 
                  68899****************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 775.44
//
Query:       MMETSP1174-20130828|21652_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.59
# Mc/sec: 1610.71
//
Query:       MMETSP1174-20130828|21657_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 873.46
//
Query:       MMETSP1174-20130828|21656_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   27.6   0.0    0.00015   18.6   0.0    2.1  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.7e-08   0.00015     261     368 ..       5     122 ..       2     134 .. 0.75
   2 !    7.0   0.0   0.00012      0.48     403     432 ..     204     234 ..     186     243 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.7e-08
    TIGR03417 261 yvddkiGellevleetrladdtivvfvsdhGdm..lGerGlw....ykmsffegsarvPllvaaperlea..grveaavstv.dllPtlvelagvel..eevlpaldGeslvpllkgke 368
                  ++d+k+ ++++++++ +  +++i+v++sd G     G    w     k s feg+  vP l  + +  ++  gr  +   +v d +Ptl + a+ +   +e   +ldG s  +++ gk+
  MMETSP1174-20130828|21656_1   5 HLDEKVRDIVNAMHKYKALENSIIVVASDNGGCpqYGAS-NWplrgTKFSSFEGGVHVPALFWSSRIASTsrGRNYDNLFHVtDWMPTLLDSAHSDAvlSELRGKLDGVSHWNEIAGKS 122
                  68*****************************86324543.34333359999********9998776443311455555555449********998752144455899999888777765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00012
    TIGR03417 403 PeqlydleadPkelenlae.epehaetleal 432
                     l+++++dP+e++nla+ +pe a++l+++
  MMETSP1174-20130828|21656_1 204 KRYLFNISDDPEEKSNLASvRPEVADELSRV 234
                  4679*************97368888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 947.61
//
Query:       MMETSP1174-20130828|21659_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1620.28
//
Query:       MMETSP1174-20130828|21660_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   44.6   0.1    4.5e-12   43.8   0.1    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.5e-08   31.3   0.1      2e-08   30.9   0.1    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.025   12.2   0.0      0.029   12.0   0.0    1.1  1  TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   3.3e-15   4.5e-12       2      65 ..      31      93 ..      30     133 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 3.3e-15
    TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqf 65
                  Y +L v ++As+++++kA +kl  + HPD+n+ +++a e f   ++  e ++d+++r++YD+ 
  MMETSP1174-20130828|21660_1 31 KYALLVVGRHASTKQLRKARKKLLLRLHPDKNR-HPQATEAFVIAQDTIELMTDPQRRRRYDEE 93
                 599******************************.****************************83 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   1.4e-11     2e-08       3      64 ..      30      91 ..      28      94 .. 0.97

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.4e-11
    TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64
                 D y  L + r a  ++++ka +kL  + hPD+n+ ++a + f    +  + +++P++r ryD
  MMETSP1174-20130828|21660_1 30 DKYALLVVGRHASTKQLRKARKKLLLRLHPDKNRHPQATEAFVIAQDTIELMTDPQRRRRYD 91
                 889**********************************************************9 PP

>> TIGR01146  ATPsyn_F1gamma: ATP synthase F1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05     0.029     102     163 ..      20      83 ..      10     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.1e-05
    TIGR01146 102 eklkelkeegkevklvviGkkgkeffkrr.einiaasvtgl.seqptfeeaqeiadklleafes 163
                  +++   +e++++++l+v+G+ + +   r+  +++  +++   +++p+++ea  ia++++e++++
  MMETSP1174-20130828|21660_1  20 RRVLSCHERDDKYALLVVGRHASTKQLRKaRKKLLLRLHPDkNRHPQATEAFVIAQDTIELMTD 83 
                  45666799999*********998665555588888888766599**************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 683.51
//
Query:       MMETSP1174-20130828|21663_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1327.66
//
Query:       MMETSP1174-20130828|21666_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 802.35
//
Query:       MMETSP1174-20130828|21665_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.74
# Mc/sec: 747.34
//
Query:       MMETSP1174-20130828|21669_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1174-20130828|21671_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 287.98
//
Query:       MMETSP1174-20130828|21672_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1174-20130828|21677_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.09s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 583.80
//
Query:       MMETSP1174-20130828|21682_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 577.45
//
Query:       MMETSP1174-20130828|21680_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 843.03
//
Query:       MMETSP1174-20130828|21676_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 715.20
//
Query:       MMETSP1174-20130828|21686_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 392.20
//
Query:       MMETSP1174-20130828|21688_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 186.98
//
Query:       MMETSP1174-20130828|21691_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|21690_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.4   1.2      0.002   15.4   0.9    1.1  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   4.8e-07     0.002     153     237 ..      44     130 ..      20     166 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.8e-07
    TIGR00570 153 lekeeeekkrlllqkleeeekkkkkkdk.qalldeLetsdldvaeliaehkeksvklekeveklkse.kkatfstgikvgaqnslvp 237
                  + + + e++r++ q+ e++++ + + ++ +  +d  ++s  + ++++a++ +  ++ +   +  + + ++ +   g+  ga + l+ 
  MMETSP1174-20130828|21690_1  44 QARMQYEAQRQEQQQQEQQHQEEEEEERtNTTIDSSSSSASPRNTVVANYDQARNMVQSVASXAEEMrEPGVRVGGVEQGAAQGLLR 130
                  34566778888888888888887776651578*****************87766555544433333303335555566666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1174-20130828|21697_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.65
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|21706_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 374.68
//
Query:       MMETSP1174-20130828|21708_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1174-20130828|21709_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|21707_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    6.8  11.0       0.15   10.1   4.7    1.6  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.48     2e+03      59      71 ..     101     113 ..      90     123 .. 0.53
   2 ?   10.1   4.7   3.6e-05      0.15      21     138 ..     159     275 ..     134     279 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.48
    TIGR00880  59 ilqGfgaaaalva 71 
                  i  +f+ ++ +++
  MMETSP1174-20130828|21707_1 101 ISLAFMLSFGSTS 113
                  3334444443333 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.6e-05
    TIGR00880  21 ltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                  +   +  + ++ +g +  +l+++ fa+ ++  + + +  l+++   +a ++ +a ++  + +e  ++++g +s+  ++  il+pl+   +++++  + +  +  lla+++ ++l++++
  MMETSP1174-20130828|21707_1 159 FRKEIDDRLMMKLGAAGAILFNITFAVKHTELSVYCLLPLVALQF-VATPSYRAFFSNCYGPEDQAAIFGAVSVLEVIPTILAPLVYNQVFSFTLSSCPEAVFYLLAAVSGVALYLIW 275
                  345666678899****************99888888888888765.6678889**************************************888777777777777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 926.99
//
Query:       MMETSP1174-20130828|21705_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 1859.43
//
Query:       MMETSP1174-20130828|21713_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 847.78
//
Query:       MMETSP1174-20130828|21716_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 573.64
//
Query:       MMETSP1174-20130828|21718_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1174-20130828|21723_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 319.33
//
Query:       MMETSP1174-20130828|21724_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|21725_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|21727_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-09   33.8   1.6    6.5e-09   32.7   1.1    1.5  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
  ------ inclusion threshold ------
       0.52    8.4   6.5       0.57    8.2   0.3    2.1  2  TIGR01402 fliQ: flagellar biosynthetic protein FliQ


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   1.1   3.1e-12   6.5e-09     312     360 ..      13      71 ..       6      83 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3.1e-12
    TIGR00879 312 rlllgvvlqafqQltGiNaimyYspti.........fenlGvst.dtallvsiivgavn 360
                   l + v+lq+fqQ++GiNai+y+ p+i         f++lG+++  ++ll++++v++ +
  MMETSP1174-20130828|21727_1  13 LLSICVALQMFQQFSGINAIIYFTPQIikeakvpmlFSQLGLKDnAASLLATVLVYVPK 71 
                  4557789*****************99855555555577889888677788888888755 PP

>> TIGR01402  fliQ: flagellar biosynthetic protein FliQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.7    0.0069        14      23      64 ..       8      48 ..       4      56 .. 0.71
   2 ?    8.2   0.3   0.00028      0.57      47      65 ..      64      82 ..      53      85 .] 0.85

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0069
    TIGR01402 23 pvllvalvvGlvisilQAvTqiqeqTLsfvPkiivvllvlll 64
                 p +l  l + + + ++Q    i+   + f P+ii    v +l
  MMETSP1174-20130828|21727_1  8 PPILRLLSICVALQMFQQFSGINA-IIYFTPQIIKEAKVPML 48
                 666667777788888999999985.47899999876555555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00028
    TIGR01402 47 qTLsfvPkiivvllvllll 65
                 + L++vPki +++ +++ll
  MMETSP1174-20130828|21727_1 64 TVLVYVPKIPALFTTMALL 82
                 679*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1174-20130828|21722_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1577.58
//
Query:       MMETSP1174-20130828|21728_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-14   51.1   0.1    4.9e-14   50.3   0.0    1.4  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.2e-17   4.9e-14      10     105 ..      54     160 ..      48     164 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 1.2e-17
    TIGR02007  10 elcpeGavveakeGetildvalkae........ieiehacekscacttchvivr.kGfdsleeasekeedlldkawGleaesrlscqavvade..dlvveipkysin 105
                  +++  G  v+a eG t+ dva + +          ie ac +++ac+tc v+v  + f  + e +e e+d+ld a+   ++srl+cq+v+++e   lv+ +p+ s n
  MMETSP1174-20130828|21728_1  54 TMLRSGFDVKALEGMTVTDVANHGDgagaqtlqEYIECACSGVMACSTCQVVVHpNWFVRVGEPDEDEQDMLDLAFDPVPTSRLGCQVVLSKEldGLVLLLPQKSNN 160
                  56666777777778888887754321111111135899***************845799******************************998643477777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|21729_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|21730_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1174-20130828|21732_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 893.13
//
Query:       MMETSP1174-20130828|21737_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1174-20130828|21736_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 217.67
//
Query:       MMETSP1174-20130828|21735_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-24   81.6   0.0      9e-24   81.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.4e-08   32.2   0.1    3.1e-08   31.2   0.0    1.5  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   4.4e-27     9e-24       5     179 ..      43     211 ..      39     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 4.4e-27
    TIGR03903   5 kvaikllRe.daaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh..akvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLiv 179
                  kv+ k++ + d+ e+e l +++ +ei++  +L hPni++     e+    ++   ey +G  l + L  +G+++    gr++  v+ a+a  h+ G+vhRD+k +n+m+  +d   +   k++DFG ++ l+           +t  +lGsP Y aPe     +     D++a G+++
  MMETSP1174-20130828|21735_1  43 KVVDKVMEDrDHYEKEFLLRKYTKEIEILRKLDHPNIIQYSSMLETHR-NMYIFMEYLPGGQLFDYLYHHGPIADLPAGRMVHGVISAVAYMHELGIVHRDIKAENLMLVSTDCPDNlrVKLIDFGYSTTLSRLS--------ATDSFLGSPGYLAPEIRQHRSYSKTVDIWAVGVLI 211
                  7888999753777***************************99999998.789999******************************************************9999755422799*******998655........5889***********88888888889999999654 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.5e-11   3.1e-08      43     139 ..      63     172 ..      52     180 .. 0.81
   2 ?   -3.2   0.0       0.5     1e+03     180     198 ..     254     272 ..     242     273 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.5e-11
    TIGR03724  43 RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk......ddklyliDfGLgkks 139
                  +  kE+ +l+++ +  +     +  +++++ i mey+ g +l d+l ++         ++++ v  +v+ +H+ givh D+  +N+++       + ++ liDfG + + 
  MMETSP1174-20130828|21735_1  63 KYTKEIEILRKLDHPNIIQYSSMLETHRNMYIFMEYLPGGQLFDYLYHHGPiadlpagRMVHGVISAVAYMHELGIVHRDIKAENLMLVstdcpdNLRVKLIDFGYSTTL 172
                  55677777777777776666666667788***************9999777899999999*************************999545666577899*****88764 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.5
    TIGR03724 180 eeekavlekvkeiesrgRY 198
                  ++++++l+++ ++ +  RY
  MMETSP1174-20130828|21735_1 254 SSAQHLLNRMLDVDQATRY 272
                  3344499999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1168.59
//
Query:       MMETSP1174-20130828|21739_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|21740_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1143.91
//
Query:       MMETSP1174-20130828|21741_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 537.73
//
Query:       MMETSP1174-20130828|21742_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1310.11
//
Query:       MMETSP1174-20130828|21745_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1174-20130828|21746_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   28.1   0.3    2.7e-07   28.1   0.2    1.5  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.1   4.2e+02      28     136 ..      21      30 ..       7      50 .. 0.48
   2 !   28.1   0.2   6.5e-11   2.7e-07      41     114 ..      75     148 ..      67     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.1
    TIGR00950  28 fallllLpllrlrnslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllglls 136
                   a+++l++                                                                                                   ++
  MMETSP1174-20130828|21746_1  21 SAAIMLAA---------------------------------------------------------------------------------------------------MG 30 
                  22222222...................................................................................................22 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 6.5e-11
    TIGR00950  41 nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGi 114
                    ++++  +++  ++  ++  +l+f +   ++ +iaa l  + P+y  +l +l+++++++  ++l+avla++G+
  MMETSP1174-20130828|21746_1  75 MTRENWRGIVVGTFFVTFMGPALFFRSLLLMPFGIAATLSCIGPVYEPALAKLINNKTPSPIAILGAVLAVIGV 148
                  4466677777777888899999***************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|21750_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 160.07
//
Query:       MMETSP1174-20130828|21752_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|21755_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 1063.25
//
Query:       MMETSP1174-20130828|21757_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1418.12
//
Query:       MMETSP1174-20130828|21760_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|21761_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 411.68
//
Query:       MMETSP1174-20130828|21766_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 524.29
//
Query:       MMETSP1174-20130828|21762_1  [L=1251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.76
# Mc/sec: 2172.61
//
Query:       MMETSP1174-20130828|21764_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2368.67
//
Query:       MMETSP1174-20130828|21769_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1104.54
//
Query:       MMETSP1174-20130828|21771_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 903.62
//
Query:       MMETSP1174-20130828|21775_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1174-20130828|21776_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1174-20130828|21781_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|21783_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.009   13.2   0.0      0.015   12.5   0.0    1.3  1  TIGR01134 purF: amidophosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.7e-06     0.015       1      53 [.     158     209 ..     158     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.7e-06
    TIGR01134   1 CgvvGvvseeeaaeltYyaLlaLQHRGQeaaGvavsdgeklrlkkgnGlvsdv 53 
                  Cg++ + ++ + ++++  +L +LQ RG +a G++++d ++   ++ +  +s+v
  MMETSP1174-20130828|21783_1 158 CGIIDMLQTYNIQKKMEHSLKVLQARGHNADGISSTDTKRYA-QRFMTYMSEV 209
                  99999999998899999*******************987655.4566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 941.52
//
Query:       MMETSP1174-20130828|21784_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.68
# Mc/sec: 613.36
//
Query:       MMETSP1174-20130828|21786_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.60
# Mc/sec: 673.14
//
Query:       MMETSP1174-20130828|21787_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-23   80.3   0.0    4.6e-23   79.9   0.0    1.1  1  TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
    6.2e-22   76.1   0.0      8e-22   75.8   0.0    1.1  1  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
      2e-13   48.0   0.0    2.4e-13   47.7   0.0    1.1  1  TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family
    5.8e-09   33.3   0.0    8.5e-09   32.7   0.0    1.1  1  TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily
  ------ inclusion threshold ------
      0.027   12.1   0.0      0.042   11.5   0.0    1.3  1  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family


Domain annotation for each model (and alignments):
>> TIGR02884  spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   5.6e-26   4.6e-23      41     216 ..      60     246 ..      44     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 5.6e-26
    TIGR02884  41 ltfde..GyenGytekildvlkekkvkaaffvtghyikt.kpdlvkrmedeGhivgnhsvhhpsltkvdeeklkeeleeveeevkevtgkkemkylrPPrGkfsertlaltkelGyktvfWslaykdWkvdkqkgk....eeakkkilkkihpGailllha....vskdnaealdevikelkekGyk 216
                  lt+d+  G +    +++ld+lke+ +k +ff t+ yi+   +++++rm++eGh vgnh  + ++ t++ + k++e l++ ++ +++  +    +++r P+G  s +  ++ +e G+ +v+  +  +d  + +q       +   + i +++  G+++++h       ++ +++l +v+  lk kG +
  MMETSP1174-20130828|21787_1  60 LTLDDapGDDPDRMTEVLDLLKEHGAKVTFFCTSDYITPgMEEIMHRMVAEGHEVGNHCPEDRQYTTTGKTKFQECLDKTHRRLSQFIDPAAIRFFRAPMGMQSATMAEVVREKGLVSVLGDVYSNDPAIGSQAPSqaktQFHANFIAHRVRRGSVVIMHVpqrfARHQCSAVLRTVLPALKAKGLS 246
                  5555533555566789*********************9626899***********************************************************************************9987765430000344566899***********733323346678899999999999876 PP

>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   9.7e-25     8e-22       7     188 ..      57     251 ..      52     254 .. 0.86

  Alignments for each domain:
  == domain 1    score: 75.8 bits;  conditional E-value: 9.7e-25
    TIGR02764   7 kialTFdiswg..eekvekildvLkeedvkATFFlsgkwaer.hpelvkeivkegheigshgyahkdltklekekikkdllkaqeviekltg.kkpkllRpPsGsfnkevlkvaeelgykvvqwsvdslD....wknpgveki...vdrvvknvksGdiiLlHasd..sakqTekaLpeilkkLkekgyefvkvs 188
                  + alT d+ +g  +++++++ld+Lke+ +k TFF  + ++     e+++++v+eghe+g+h  +  ++t++ k k ++ l k+++ +++ +    ++++R P G  + ++ +v++e g  +v  +v s+D     + p++ k     + + ++v+ G+++++H  +   ++q ++ L ++l+ Lk kg   v +s
  MMETSP1174-20130828|21787_1  57 HFALTLDDAPGddPDRMTEVLDLLKEHGAKVTFFCTSDYITPgMEEIMHRMVAEGHEVGNHCPEDRQYTTTGKTKFQECLDKTHRRLSQFIDpAAIRFFRAPMGMQSATMAEVVREKGLVSVLGDVYSNDpaigSQAPSQAKTqfhANFIAHRVRRGSVVIMHVPQrfARHQCSAVLRTVLPALKAKGLSCVPLS 251
                  679*******955689***********************98625677899**************************************988626789**************************999999933333566665542225778999**********7662257899****************999776 PP

>> TIGR02873  spore_ylxY: probable sporulation protein, polysaccharide deacetylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0     3e-16   2.4e-13      98     259 ..      71     246 ..      52     255 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 3e-16
    TIGR02873  98 eylpkilkilkkhdvkatffleGkwvken.vqlakmiveegheiGnhaynhpdmkklskeeiseqlektnevieatie.ekpkwfappsGsfrdevvqiaaelqmetilwtv...d.tidwkkpepsvlv...drvlskihpGaivlmhpte.....ssaegleelitkikekGyk 259
                  + + ++l++lk h  k tff   +++     ++++++v eghe+Gnh+ +  + ++  k + +e l+kt + + + i+    ++f  p G    ++ ++  e+++ ++l  v   d +i  + p+    +   + + +++  G++v+mh  +      +++ l +++  +k kG+ 
  MMETSP1174-20130828|21787_1  71 DRMTEVLDLLKEHGAKVTFFCTSDYITPGmEEIMHRMVAEGHEVGNHCPEDRQYTTTGKTKFQECLDKTHRRLSQFIDpAAIRFFRAPMGMQSATMAEVVREKGLVSVLGDVysnDpAIGSQAPSQAKTQfhaNFIAHRVRRGSVVIMHVPQrfarhQCSAVLRTVLPALKAKGLS 246
                  46899********************9875167999******************************************93468*************************997772223357788887655432227899************654111113445677777777777775 PP

>> TIGR03006  pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0     1e-11   8.5e-09      36     120 ..      73     159 ..      69     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1e-11
    TIGR03006  36 verilelldekevkatff.vlGWvaeryPelvrriveaGhelashGyghervteltreefradierskklled.lsgqaveGyraps 120
                  ++++l+ll+e+++k tff +  +++  + e+++r+v++Ghe+  h  + ++ t+  + +f++ + ++++ l + +   a++ +rap 
  MMETSP1174-20130828|21787_1  73 MTEVLDLLKEHGAKVTFFcTSDYITPGMEEIMHRMVAEGHEVGNHCPEDRQYTTTGKTKFQECLDKTHRRLSQfIDPAAIRFFRAPM 159
                  5789**************4457*******************************************9987776615667899999984 PP

>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.1e-05     0.042      32      88 ..     116     170 ..      91     176 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.1e-05
    TIGR03830  32 eeCpaCgeelldeeeakensaaiaefkrkvdglltgeeirriRkklglsqkeaaell 88 
                  ++Cp+  ++ ++ +  +++++++++ +r+ ++ + +++ir++R  +g++ +++ae++
  MMETSP1174-20130828|21787_1 116 NHCPE--DRQYTTTGKTKFQECLDKTHRRLSQFIDPAAIRFFRAPMGMQSATMAEVV 170
                  55654..45566667899**********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|21792_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|21791_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1257.78
//
Query:       MMETSP1174-20130828|21795_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.0   1.2      0.038   11.9   0.9    1.6  1  TIGR04161 VPEID-CTERM: VPEID-CTERM protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR04161  VPEID-CTERM: VPEID-CTERM protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   9.2e-06     0.038      16      29 ..     127     140 ..     126     141 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.2e-06
    TIGR04161  16 vaaaLLLAwElrRr 29 
                  +++aL+LA E+rR+
  MMETSP1174-20130828|21795_1 127 LMGALALAMEKRRA 140
                  79***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1174-20130828|21794_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.53
# Mc/sec: 729.68
//
Query:       MMETSP1174-20130828|21797_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|21799_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 711.04
//
Query:       MMETSP1174-20130828|21801_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 535.96
//
Query:       MMETSP1174-20130828|21804_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|21803_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   62.0   0.1    7.7e-15   52.9   0.0    2.0  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
    1.7e-17   60.7   1.6    1.7e-16   57.4   1.1    2.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
     0.0022   15.9   0.1     0.0036   15.2   0.0    1.3  1  TIGR00040 yfcE: phosphodiesterase, MJ0936 family
     0.0034   14.6   0.0     0.0047   14.2   0.0    1.3  1  TIGR03729 acc_ester: putative phosphoesterase


Domain annotation for each model (and alignments):
>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   7.5e-18   7.7e-15       4     171 ..      11     180 ..       8     188 .. 0.79
   2 !    8.3   0.0   0.00029       0.3     222     255 ..     181     213 ..     171     220 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 7.5e-18
    TIGR00668   4 yligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryvkslgdavrlvlgnhdlhllavalgikkvkpkdrldalleapda..dellnwlrrqpllvvdeekklvlahagispdwdlktak....ecareveavlssdsyrylleamyaeqpdrwspelqgla 171
                   ++gd+hgc de++ +ler       d l l+gdlv +g+ks+evl  +++  ++   v gnh+l  l ++++ +  k    +++ ++  da   e ++++   p  +  + ++ +++hag+ p   l+       +  r++ +v+ s+  ry  ++   e    w+++ +g +
  MMETSP1174-20130828|21803_1  11 VIVGDIHGCCDEFHEMLERY--VCDDDCLILAGDLVNKGPKSVEVLHTIRARKNTF-AVKGNHELASLEAYADRHSDKGA-NVKPKYAWTDAltAEDIEYMDSLPHTISLPLHRALVVHAGLVPGVPLEDQDpgdmVRMRDLTTVIDSGTVRYEAHEKSDEASFPWASQWRGPE 180
                  589***************85..5668*************************99986.699********999997655543.3555555555422455788888899999999999*********99888654221155789999999999999888888888888888877765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00029
    TIGR00668 222 sivfghwaslvdegtpegiyaldtgcvwgnrltl 255
                   i fgh a  + +  p +  +ldtgc++g++lt 
  MMETSP1174-20130828|21803_1 181 HIYFGHDAKRKLQREPFA-TGLDTGCLYGGKLTA 213
                  688999999888877765.69***********96 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   1.1   1.6e-19   1.7e-16     184     421 ..      12     237 ..       3     246 .. 0.76

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 1.6e-19
    TIGR04075 184 iiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmvkagaalcvpGnheekllrklrGrkvklthGlaetleqlaaeseefreevkefldglvshyvlddGklvvahaGlk.....eeyqgrasgrvrefalyGet.t..GetdefGlPvrydWaadyrGkalvvyGhtpvkeaewvnnticidtGcvfGGklta..lryPer.elvsvpaekvylepv 421
                  i+Gd+hGC+de +e+le+  y  +++               +++ Gdlv++Gp+s++vl+ ++   +  + ++v+Gnhe   l + + r+     G    ++   a ++++++e  e++d+l   + l   +  v haGl      e+       r+r+++   ++ t   e  e      ++Wa+++rG   + +Gh +  + ++   +  +dtGc +GGklta  l+   r +lv+v+a+  +++p 
  MMETSP1174-20130828|21803_1  12 IVGDIHGCCDEFHEMLER--YVCDDD--------------CLILAGDLVNKGPKSVEVLHTIR---ARKNTFAVKGNHELASLEAYADRHSDK--G--ANVKPKYAWTDALTAEDIEYMDSLPHTISLPLHRALVVHAGLVpgvplEDQDPGDMVRMRDLTTVIDSgTvrYEAHEKSDEASFPWASQWRGPEHIYFGHDAKRKLQREPFATGLDTGCLYGGKLTAavLQLGTRpQLVHVKAKTCHVRPS 237
                  9***************98..433332..............47999**************9887...56889********99888888665443..3..2344445566677777778888888888888889999999996222223333334557777765433313125666666778899*****************************************9545555554899999999988885 PP

>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-06    0.0036       2      62 ..       9      71 ..       8      89 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-06
    TIGR00040  2 kilvlsDtHiperatelpvellkklsevdlvvhaGdlt.....sakvlkefedlaekviavrGnnD 62
                 ++++++D+H+     e  + l ++  + d ++ aGdl+     s +vl+++   ++ ++av+Gn+ 
  MMETSP1174-20130828|21803_1  9 RVVIVGDIHGCCD--EFHEMLERYVCDDDCLILAGDLVnkgpkSVEVLHTIRARKN-TFAVKGNHE 71
                 799******9875..4555556667788************9999999999987777.*******86 PP

>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.6e-06    0.0047      34      76 ..      35      74 ..      15     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.6e-06
    TIGR03729 34 dilliaGDisNdfkkslafieklqelkeikvtflaGNHdllkd 76
                 d l++aGD++N+  ks ++++++++  + ++  + GNH+l+ +
  MMETSP1174-20130828|21803_1 35 DCLILAGDLVNKGPKSVEVLHTIRA--RKNTFAVKGNHELA-S 74
                 5799********************5..55667789****98.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|21807_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 577.45
//
Query:       MMETSP1174-20130828|21810_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|21813_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1174-20130828|21808_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-11   40.1   0.0      1e-10   38.7   0.0    1.6  2  TIGR00653 GlnA: glutamine synthetase, type I
    1.9e-06   24.5   0.0    1.5e-05   21.5   0.0    2.0  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   5.1e-14     1e-10     167     286 ..     248     366 ..     190     383 .. 0.76
   2 ?   -3.0   0.0      0.23   4.8e+02     348     384 ..     468     507 ..     465     523 .. 0.63

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 5.1e-14
    TIGR00653 167 kikkkggYfdvepvDkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwk.dgenlfageegyagLs 286
                    + +  Yf++ p+  +k + +e+  +l +lg  ++v H Eva+aq+Ei   f     ++D  ++  ++   +a+k+ ++  F  Kp+ g ngsG H + s+    g n f+  + ++  s
  MMETSP1174-20130828|21808_1 248 GQQMDLNYFSAMPLP-IKACMDEVQAELLKLGCPLNVYHNEVAPAQHEICPFFTITNVSSDLNQIAMQICCEIAAKYDLVFLFHEKPFAGINGSGKHNNWSIGTdTGLNFFSPGK-TEKTS 366
                  445566788888875.677889999************************98887777788888999999*********************************9835677776555.33344 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.23
    TIGR00653 348 akRiEvRspDpsanpYLafaal...lmAgldGiknkidpg 384
                  ++R+E+R++ +s n    +a +   ++ g+  +++ i+ g
  MMETSP1174-20130828|21808_1 468 GNRFEFRAVGSSQNCGFPMAMVntvFADGMRQLNELIEGG 507
                  5799*****9999987666654111444554455555555 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.5e-09   1.5e-05     159     261 ..     266     368 ..     258     393 .. 0.87
   2 ?    0.4   0.0     0.019        40     315     362 ..     459     508 ..     449     524 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 7.5e-09
    TIGR03105 159 vleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfaddadeeglgl 261
                   ++e+ + l +lG  l     e a  q+e+   ++ + +++D   +   +  eia++  l+  f  kPfa   G+G h + s+  ++g n f+    e++  l
  MMETSP1174-20130828|21808_1 266 CMDEVQAELLKLGCPLNVYHNEVAPAQHEICPFFTITNVSSDLNQIAMQICCEIAAKYDLVFLFHEKPFAGINGSGKHNNWSIGTDTGLNFFSPGKTEKTSEL 368
                  57899999999**9988888999*******9999999*******99999*******************************************87655544444 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.019
    TIGR03105 315 nRthmvRiP.dagRlelRlaDgaan...pYlvsaavlaaGLdGierkldpgk 362
                  nRt+    P  ++R+e+R   ++ n   p  ++ +v a G+  +++ ++ gk
  MMETSP1174-20130828|21808_1 459 NRTAP--FPfCGNRFEFRAVGSSQNcgfPMAMVNTVFADGMRQLNELIEGGK 508
                  44444..454489***********9444455555566666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 2413.03
//
Query:       MMETSP1174-20130828|21814_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|21812_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|21816_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|21817_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 520.41
//
Query:       MMETSP1174-20130828|21818_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 143.72
//
Query:       MMETSP1174-20130828|21819_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   32.6   0.0    1.2e-07   29.8   0.0    1.9  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
    0.00024   19.8   0.0    0.00074   18.2   0.0    1.9  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC


Domain annotation for each model (and alignments):
>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0     6e-11   1.2e-07       1      99 [.       2     109 ..       2     195 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 6e-11
    TIGR01685   1 lpkvivfDlDgTlWdhynisllkgPf.....KpvksensiiidkeGae.ltlikevrdvLqslkd...agvilaiasrndvp...evareiLkifkikyaGkvvPlaelFd 99 
                  lp+++vfDlD  +W ++++++ + P      K+v+  +++i  + G + +tl++   +vLq+ +d    g+ +a as +d p   ev + +L ++++   G++v  ++ F+
  MMETSP1174-20130828|21819_1   2 LPELVVFDLDMCIWSPEMYTIEELPStsiigKLVDRGDGVIGVRAGSDiITLFPAALKVLQEYHDgcyPGMRIAAASSADTPfavEVGKCALSMLEVV-PGVTV--QDVFS 109
                  689******************999965555589999999*******9846***************9999********99877555888999*****99.77776..34444 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07   0.00074       2     120 ..       5     155 ..       4     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3.6e-07
    TIGR01681   2 vivfDlDnTLwtdeed..............vvkedpiedie.ltevt..ikeirdvLqelkkn...GvllalaSknddeevakellkikedYfd..............vilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDD 120
                  ++vfDlD  +w +e++              v   d+++ ++ +++    +++   vLqe+ +    G+ +a aS+  d   a e+ k+ +   +               +  ++++ + ++      Ks  +  il++    + ++ +lf+DD
  MMETSP1174-20130828|21819_1   5 LVVFDLDMCIWSPEMYtieelpstsiigklVDRGDGVIGVRaGSDIItlFPAALKVLQEYHDGcypGMRIAAASSA-DTPFAVEVGKCALSMLEvvpgvtvqdvfslgWTEGTKNMQVGRSPPLSSDKSSTHFPILRAET-GISYDRMLFFDD 155
                  79**************9999999999998766666666665155555899999999999999899999*******9.888999999998874447889999999877755566777777777777789988888888887.677899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 690.40
//
Query:       MMETSP1174-20130828|21815_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.70
# Mc/sec: 801.36
//
Query:       MMETSP1174-20130828|21820_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.5   0.2      0.039   10.9   0.1    1.2  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.4e-06     0.039      23      89 ..     182     249 ..     165     254 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.4e-06
    TIGR00452  23 lpaqlkewerqthglykkwskiveflpelkadeldlksavkadkeeplsegekkr.ileelkalmpwr 89 
                    +  ++w   +h  yk+  +++ fl +l++  ld   +  + ++ p+ +  kk+ +    k+l  wr
  MMETSP1174-20130828|21820_1 182 NGTSCQKWTVVHHAAYKNQMEVIAFLYDLDNTSLDRSLVAITGSNFPRFQSSKKKnMKMVEKHLSTWR 249
                  5566789****************************988888888889877666550555557899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 930.87
//
Query:       MMETSP1174-20130828|21823_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-38  128.3   0.1    3.7e-36  122.6   0.1    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      2e-10   38.1   0.4    1.1e-06   25.8   0.1    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.002   15.1   0.1     0.0037   14.2   0.0    1.4  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0021   15.3   0.2     0.0049   14.1   0.1    1.5  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
  ------ inclusion threshold ------
       0.01   13.4   0.0      0.019   12.6   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.1   4.6e-39   3.7e-36     219     315 ..       1      97 [.       1     111 [. 0.95
   2 !    3.9   0.0    0.0055       4.5     322     351 .]     145     173 ..     118     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 4.6e-39
    TIGR03156 219 klFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle 315
                  +lFATLdpttrr+ lp +++vl++DTVGFi+kLP++Lv++F+a Lee ++ad++lhvvDa+++ a++q+++v++++e+ +a ++ ++lvlNk+d++ 
  MMETSP1174-20130828|21823_1   1 MLFATLDPTTRRVILPGGKKVLFSDTVGFIQKLPTKLVASFRASLEELKDADVILHVVDAASPIAAQQVHSVQSIIEDEEAGATSQILVLNKADAVV 97 
                  79********************************************************************************************986 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0055
    TIGR03156 322 leekkeeavlvsAkkgegleeLleaieeal 351
                    +  +++v +sA +g gleeLl+++eeal
  MMETSP1174-20130828|21823_1 145 FGRP-QQTVSISALHGYGLEELLTRVEEAL 173
                  3333.689*****************99875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.3e-09   1.1e-06     221     299 ..      17      96 ..       4     107 .. 0.79
   2 !   10.7   0.0     5e-05     0.041     122     164 ..     134     177 ..     130     209 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.3e-09
    TIGR03594 221 kgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegka....lvivvNKwDlv 299
                   gkk+l+ DT G  +k  ++      s   +l+ +++adv+l v+Da ++i  q  + ++ i+e++ a     ++v+NK D+v
  MMETSP1174-20130828|21823_1  17 GGKKVLFSDTVGFIQKLPTK---LVASFRASLEELKDADVILHVVDAASPIAAQQVHSVQSIIEDEEAgatsQILVLNKADAV 96 
                  578999999*9999888766...35788999***********************9998888877654322227********98 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 5e-05
    TIGR03594 122 keeaeaaefyslGl.gevlaiSaehgrgikdLldeileelpeee 164
                  +eea+ ae++++G  ++ + iSa hg g+++Ll+++ e+l ++ 
  MMETSP1174-20130828|21823_1 134 TEEADWAELHEFGRpQQTVSISALHGYGLEELLTRVEEALLAQA 177
                  56788899999998356899***************999886654 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.5e-06    0.0037     278     329 ..      40      96 ..       8     109 .. 0.76
   2 ?   -3.0   0.0      0.75   6.2e+02     415     439 ..     172     196 ..     152     207 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.5e-06
    TIGR00450 278 GiekslkaikeadlvlyvlDaskpltkdd.....eliitlkkkkkdlllvlNKiDLa 329
                    + sl+ +k+ad++l v+Da +p   ++     ++i++++      +lvlNK+D +
  MMETSP1174-20130828|21823_1  40 SFRASLEELKDADVILHVVDAASPIAAQQvhsvqSIIEDEEAGATSQILVLNKADAV 96 
                  5677999**************99986554322336788888899999*******965 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.75
    TIGR00450 415 lreaiealgqvtgetvtedlldeiF 439
                  ++ a+ ++ +v+ ++++ dll ei 
  MMETSP1174-20130828|21823_1 172 ALLAQAKMVEVLLPYSSGDLLSEIH 196
                  4455566666666666666666664 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   5.9e-06    0.0049      16      61 ..      45      96 ..      31     102 .. 0.81
   2 ?   -2.8   0.0      0.81   6.7e+02      67     104 ..     137     175 ..     133     181 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.9e-06
    TIGR03596 16 keklklvDvvievlDARiplsskn.peleelvk.....nkprlivlnkaDla 61
                  e+lk +Dv++ v+DA  p+++++ ++++++++        +++vlnkaD +
  MMETSP1174-20130828|21823_1 45 LEELKDADVILHVVDAASPIAAQQvHSVQSIIEdeeagATSQILVLNKADAV 96
                 5899****************9987357888888433335679*******975 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.81
    TIGR03596  67 kkwlkyfe.ekgkkalavnakkkkkvkkilkaikkllke 104
                  ++w +  e  + ++++ ++a ++ +++++l+ ++++l +
  MMETSP1174-20130828|21823_1 137 ADWAELHEfGRPQQTVSISALHGYGLEELLTRVEEALLA 175
                  467777776667788999999999999999888887655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.019      74     125 ..      48      96 ..       5     108 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.3e-05
    TIGR00231  74 vreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlk 125
                  +++++++l vvd +++ ++++++  +  ++ii+  ++  +  ilv+nK D +
  MMETSP1174-20130828|21823_1  48 LKDADVILHVVDAASP-IAAQQVH-SV-QSIIEDEEAGATSQILVLNKADAV 96 
                  3445555555555555.5555555.44.455555555999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 971.92
//
Query:       MMETSP1174-20130828|21828_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   15.0   0.0     0.0098   14.0   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
  ------ inclusion threshold ------
      0.015   12.9   0.0      0.021   12.3   0.0    1.1  1  TIGR00740 TIGR00740: putative methyltransferase
      0.018   12.6   0.0      0.038   11.6   0.0    1.5  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      0.035   11.4   0.0      0.053   10.8   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   9.6e-06    0.0098      22     118 ..      77     179 ..      61     182 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.6e-06
    TIGR02469  22 vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNl....rrfgvsnieivegdapkaeedsleeadavfv...gGsgkklkeileaverrlrpggri 118
                   llD+G+G Gs  + + ++ p +r +a++ +e a++ +++      rr ++++ +i +g  p+  e+ + +  + +      s+ k  ++l+ v+r lrpgg i
  MMETSP1174-20130828|21828_1  77 LLLDVGSGYGSALLPLLQRNPWLRAFAMDLSERAIKKLKSHSdfdpRRCRAQAWDITRG-LPEGVEAGQADLAILVFtlsAISKDKHVNVLKTVMRGLRPGGLI 179
                  689*********************************99986522225777778888886.56322222222222222111234555557888888888888776 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05     0.021      56     168 ..      77     190 ..      72     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.1e-05
    TIGR00740  56 lvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkaykaaipvevlcndi.....reveikeasavvlnfvlqflepeereallkkiyeglnlnGvlvlsekisfeda 168
                  l+ d+G   G+a+l + ++  ++ ++  ++d s+  +++ + +  +++     + +  di       ve  +a + +l f+l  +   +   +lk + +gl ++G +   ++ +++ +
  MMETSP1174-20130828|21828_1  77 LLLDVGSGYGSALLPLLQR--NPWLRAFAMDLSERAIKKLKSHS-DFDPR-RCRAQAWDItrglpEGVEAGQADLAILVFTLSAISKDKHVNVLKTVMRGLRPGGLICFRDRAMYDLT 190
                  6678888888888876443..34578899999999999998884.56544.45555555521111579**************************************999998887655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05     0.038      38     137 ..      78     186 ..      66     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.7e-05
    TIGR02072  38 vLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklp...lekksfDlivSnlalQWl..ddlsevlaelarvlkpgGllafstfgk 137
                  +Ld+G+G G     ll+r+p  + +a+D+se  ++ +k+++     +   ++ di +     +e  + Dl +   +l  +  d+  +vl+ + r l+pgGl++f + + 
  MMETSP1174-20130828|21828_1  78 LLDVGSGYGSALLPLLQRNPWLRAFAMDLSERAIKKLKSHSDfdprRCRAQAWDITRGLpegVEAGQADLAILVFTLSAIskDKHVNVLKTVMRGLRPGGLICFRDRAM 186
                  79**************************************999988555555666553311134444676655555554411445568999999999999998876555 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.2e-05     0.053      91     127 ..      77     113 ..      61     134 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.2e-05
    TIGR03534  91 kvlDlgtGsGaIalalakelpdakviavDiseeAlkv 127
                   +lD+g+G G   l l+++ p ++ +a+D+se+A+k 
  MMETSP1174-20130828|21828_1  77 LLLDVGSGYGSALLPLLQRNPWLRAFAMDLSERAIKK 113
                  589*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1217.23
//
Query:       MMETSP1174-20130828|21829_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1174-20130828|21832_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-17   60.9  10.8      3e-17   60.9   7.5    1.5  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.23   9.5e+02     136     167 ..      97     126 ..      75     133 .. 0.46
   2 !   60.9   7.5   7.2e-21     3e-17       2     222 .]     154     371 ..     153     371 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.23
    TIGR00803 136 lsdgslisnkgffigyttavwivvllnvvggl 167
                  ls ++++s+ +  + ++t++++v  l++++ l
  MMETSP1174-20130828|21832_1  97 LSRYTRMSDGV--AISATTISAVSELVKIPIL 126
                  44444444433..3444444444444444444 PP

  == domain 2    score: 60.9 bits;  conditional E-value: 7.2e-21
    TIGR00803   2 lsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssaktlseg..nlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  l+ P+l+ + qn l + al+ l  a++q   q k+  tal++  +l ++l  +q +++ l+     + q+ ++s + ++ g   l   l +vl+alls+ l  vy ekilk   + ++++n+q ++   + +++ ++ + g+     g   g  tavw+v  l+ +  +++ +  ky+dn+++s +   siil ++   ++ ++  +  f++g+    +++ lY
  MMETSP1174-20130828|21832_1 154 LALPSLAWAIQNVLYFQALSHLSPASYQILsQTKMIFTALFMYTLLDKRLNPRQIMAIVLIIASSVATQISEVSRNSIIGGgnALYGALFTVLGALLSA-LPNVYYEKILKTEGQNLWAKNIQVTFWINFWLLCAAVRA-GEPL-ALG---GLSTAVWAVAGLQGLKCVLIPATLKYTDNIIYSYAKPASIILTAVCTTVASRILPTAPFLIGMGFMLASIWLY 371
                  899*************************988*******************************************9888888744445578999999876.689*************************99955555444.4443.345...799*****************************************************************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1406.63
//
Query:       MMETSP1174-20130828|21834_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1174-20130828|21840_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|21841_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|21843_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1727.86
//
Query:       MMETSP1174-20130828|21844_1  [L=1007]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-12   43.3   0.0    5.1e-09   33.2   0.0    2.5  3  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     9e-05      0.37     259     331 ..     117     189 ..      95     210 .. 0.89
   2 ?   -3.6   0.0      0.17   7.2e+02     476     536 ..     468     528 ..     436     556 .. 0.80
   3 !   33.2   0.0   1.2e-12   5.1e-09     624     691 ..     764     832 ..     744     838 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 9e-05
    TIGR02110 259 llkeflqdeaPggLlAeLrergLaeslaatllyqdarqalLalefeatsvsaaaaeqveelllewLgalkeqa 331
                   l + ++ e Pg+L   L++rg ae+l +    q++    +++ + +t+    +  +v +l++ +L+ l+++ 
  MMETSP1174-20130828|21844_1 117 YLSHVIGHEGPGSLHDVLQQRGWAEDLSVGASCQYDDCHAMKISITLTESGEGQLSDVIDLVYRYLALLRATP 189
                  68899999*******************99999999999999999999999999999*************9985 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.17
    TIGR02110 476 rqLrpLladaRqaGvelefealgedWqlkLngprsalravvelalallalaapslaqeaas 536
                    L + + da  aG   ++eal     ++  g +s+ + +++  l++ +    +++++aas
  MMETSP1174-20130828|21844_1 468 SDLNSYVYDAYVAGMSYTLEALTTGLVIQVTGFESQVPRLLNDILQRTRSLITQVQATAAS 528
                  4567777888899999999999999999999999999999998888888877777777776 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 1.2e-12
    TIGR02110 624 PlPtad.vaseAAlRlLaqlletaFyqRLRvelQlGYavfsrvrrvadrdGLllavQSPdasaaellqh 691
                  P Pt    +++A l ++a+l  ++ +q LR e QlGY v++   r a++ GL + vQS   s+ +l   
  MMETSP1174-20130828|21844_1 764 PPPTRLtADDQACLDVIAHLAYPNIFQTLRTEEQLGYLVSASTGRFAGVMGLTFLVQSSVKSPVHLQAR 832
                  5566540457899*********************************************98887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.67
# Mc/sec: 1983.78
//
Query:       MMETSP1174-20130828|21847_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 916.59
//
Query:       MMETSP1174-20130828|21849_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 356.37
//
Query:       MMETSP1174-20130828|21848_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.5   0.1    1.9e-05   21.9   0.1    1.2  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
     0.0051   14.0   0.5        0.7    7.0   0.2    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
      0.007   13.7   0.2      0.011   13.0   0.1    1.3  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2


Domain annotation for each model (and alignments):
>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.4e-08   1.9e-05      55     128 ..      46     119 ..      29     139 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.4e-08
    TIGR03100  55 eaGlpvlRfDyrGmGDsegelstFedi.eaDiaAAidafleaapeleeivlwGlCDaAsAvllyatadervaglv 128
                    G +v+ fD +G G seg   +     ++D++  id ++     ++++++wG   +A   +ly   d ++ g +
  MMETSP1174-20130828|21848_1  46 GIGTTVFAFDCSGSGKSEGRYVSLGWYeREDLRVVIDHLRG-SGTVSSLAVWGRSMGAVTGILYQARDLELLGRM 119
                  5699*****************999765279********987.578*******************87777766654 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2   0.00052       0.7      40     108 ..      49     120 ..      38     128 .. 0.75
   2 !    5.1   0.0     0.002       2.8     182     234 ..     177     229 ..     162     244 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00052
    TIGR02427  40 frvlryDkrGHGlSdvpegpysiedladdvlallDal....giekaavcGlSlGGliaqaLaarrpdrvealv 108
                    v ++D  G G+S+   ++ +  +  +d+  ++D+l     +++ av+G S+G +++    ar  +++ ++ 
  MMETSP1174-20130828|21848_1  49 TTVFAFDCSGSGKSEGRYVSLGWYE-REDLRVVIDHLrgsgTVSSLAVWGRSMGAVTGILYQARDLELLGRMS 120
                  5678889999999976666544433.3566666666633326999**************99999999887775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.002
    TIGR02427 182 dadlrerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlp 234
                  d+   ++++  +vP+l i+ ++D    p++++ + ++  ga+  ++ e+ H +
  MMETSP1174-20130828|21848_1 177 DLSPVQHTKVCTVPALFITAENDDFISPAHAEMLYETYVGAKNLVLVEGDHNS 229
                  555567778889************************99999998888888854 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   8.3e-06     0.011      54     112 ..      46     104 ..      36     132 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.3e-06
    TIGR03101  54 aeGfgvlqiDlyGtGDSaGdfaeaswdvWkeDvaaalrwlkekga.qavtLwglrlgalL 112
                    G +v ++D  G G S+G ++   w   +eD+++ +  l+  g+ +++ +wg  +ga+ 
  MMETSP1174-20130828|21848_1  46 GIGTTVFAFDCSGSGKSEGRYVSLGWYE-REDLRVVIDHLRGSGTvSSLAVWGRSMGAVT 104
                  56999*********************75.9***********99863689****9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.54
# Mc/sec: 769.94
//
Query:       MMETSP1174-20130828|21850_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1327.66
//
Query:       MMETSP1174-20130828|21853_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|21855_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 431.16
//
Query:       MMETSP1174-20130828|21858_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1174-20130828|21861_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   53.5   0.4    3.4e-15   53.4   0.3    1.0  1  TIGR00831 a_cpa1: Na+/H+ antiporter
    4.4e-11   39.7   0.2    4.4e-11   39.7   0.2    1.0  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3


Domain annotation for each model (and alignments):
>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.3   1.7e-18   3.4e-15      83     151 ..       2      71 .]       1      71 [] 0.93

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 1.7e-18
    TIGR00831  83 alalvvvtvvavgfllrwvlGiplaaa.lvlgavlsptDavavaglvkeirlPkkllivleGesllnDga 151
                  a+ +v+  ++  +++++ + G++ + a l++ga+ls+tD+vav +l+ke     +l++++eGesllnDg+
  MMETSP1174-20130828|21861_1   2 AVPGVIFCTICTAYAVKLLFGVDDMNAcLMMGAMLSATDPVAVVALMKELGTSIRLSTLIEGESLLNDGT 71 
                  6779******************877653789*************************************97 PP

>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2   2.2e-14   4.4e-11     112     175 ..      11      70 ..       1      71 [] 0.81

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2.2e-14
    TIGR00840 112 glslYgillilgleeldiglldallfgslisAvDPvavLavFeevkvnekLyiliFGEsLlNDa 175
                    + Y++ l++g++     +   l++g+++sA+DPvav+a+ +e+    +L +li GEsLlND+
  MMETSP1174-20130828|21861_1  11 ICTAYAVKLLFGVDD----MNACLMMGAMLSATDPVAVVALMKELGTSIRLSTLIEGESLLNDG 70 
                  334577777777776....567899**************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 275.62
//
Query:       MMETSP1174-20130828|21862_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.09s 00:00:00.26 Elapsed: 00:00:00.42
# Mc/sec: 430.54
//
Query:       MMETSP1174-20130828|21860_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 1077.46
//
Query:       MMETSP1174-20130828|21873_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|21869_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1211.19
//
Query:       MMETSP1174-20130828|21878_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.39
# Mc/sec: 226.75
//
Query:       MMETSP1174-20130828|21877_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 890.93
//
Query:       MMETSP1174-20130828|21879_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|21875_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.54
# Mc/sec: 2119.16
//
Query:       MMETSP1174-20130828|21881_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1192.98
//
Query:       MMETSP1174-20130828|21888_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 755.94
//
Query:       MMETSP1174-20130828|21889_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.6  13.4       0.19    9.9   9.3    1.3  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit


Domain annotation for each model (and alignments):
>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   9.3   4.6e-05      0.19       6      72 ..      55     121 ..      54     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.6e-05
    TIGR02926   6 kAEekaeelieeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekIleegek 72 
                  +A ++++++i+e +e   +++++ + + +el  + +++   +  + ++++ e+ +k  ekI ++  k
  MMETSP1174-20130828|21889_1  55 RAHRDVKNMIREDREDHRKKLSDSKRKRDELSRKKKKKKADETMKKVKSKIEKTKKNTEKIKQNHRK 121
                  58899**************************988777666666677888889999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       815  (0.198684); expected 82.0 (0.02)
Passed bias filter:                      379  (0.092394); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|21884_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2172.74
//
Query:       MMETSP1174-20130828|21885_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|21891_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-15   55.3   0.0    4.4e-13   46.7   0.0    2.3  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    3.9e-12   44.0   0.0    3.4e-10   37.6   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    2.4e-09   34.8   0.0    1.7e-06   25.4   0.0    2.3  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
      2e-08   31.7   0.0    7.5e-08   29.9   0.0    1.7  2  TIGR03611 RutD: pyrimidine utilization protein D
    3.9e-05   20.8   0.0    0.00079   16.5   0.0    2.1  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    8.8e-05   20.0   0.0     0.0018   15.7   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    0.00048   17.2   0.0    0.00067   16.7   0.0    1.2  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    0.00059   17.4   0.3     0.0018   15.8   0.1    1.7  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   8.6e-16   4.4e-13      21     124 ..       4     109 ..       2     148 .. 0.90
   2 !    6.4   0.0    0.0017      0.85     206     277 ..     241     317 ..     231     318 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 8.6e-16
    TIGR03056  21 rdeGpaaGPvllllhGagasshsfrklvpllaar.frvvapdlPGhGftratarf.rfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvrPravv 124
                   d+G+   P++++lhG   s  s+r+ + + a++ +r +apdl G G t a+  +  + + ++a d+  ll+a++ +   ++Gh  Ga +a +lal  p   r + 
  MMETSP1174-20130828|21891_1   4 ADTGNVGDPIVFFLHGWPESWFSWRHQLKACAKKgWRGIAPDLRGYGSTDAPEEMaAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLC 109
                  58999999******************999998765****************98752689*************************************9987777655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0017
    TIGR03056 206 qWelaplqralpriavPvlliageedkavp....pdvskeaatrlplatlrev..pGlGhlvheedadgvaglildav 277
                  +We+ p  ++l +++ Pvl++age d  +     +  ++e  + +  a ++ v  p  Gh + +e+++ v   + +++
  MMETSP1174-20130828|21891_1 241 DWEITPQLKDL-KLTQPVLFLAGEADPVIKnfggSARAEEGMKAVCAAGYEGVfyPQKGHWIQQESPQEVNNALFNFM 317
                  69999999999.599***********99862222345666677888899987655899********999998887776 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.6e-13   3.4e-10       3     100 ..      12     109 ..      10     115 .. 0.91
   2 ?    4.2   0.0     0.011       5.5     194     251 ..     253     317 ..     243     318 .. 0.65

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 6.6e-13
    TIGR03695   3 pvlvlLHGflgskedwqalieele.ekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperlegli 100
                  p++++LHG  +s  +w++  ++++ + ++ +a DL g G++++++e +a+++ + a + +  ll++l+ ++++LvG   G+ +a +lal +p+ +++l+
  MMETSP1174-20130828|21891_1  12 PIVFFLHGWPESWFSWRHQLKACAkKGWRGIAPDLRGYGSTDAPEEMAAYNIYSLAGD-VLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLC 109
                  7899************9988888538899*****************************.55667777**************************999987 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.011
    TIGR03695 194 lklpvlylvGekD...ekFkkia..kemqkllpal..klevieeaGHnihlenpeafakileefl 251
                  l+ pvl+l+Ge D   + F   a  +e  k + a+  + +  ++ GH i +e p++ +++l +f+
  MMETSP1174-20130828|21891_1 253 LTQPVLFLAGEADpviKNFGGSAraEEGMKAVCAAgyEGVFYPQKGHWIQQESPQEVNNALFNFM 317
                  466999999999954445654441133333444440144566999************99998887 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.3e-09   1.7e-06      13     108 ..      11     109 ..       2     114 .. 0.84
   2 ?   -4.2   0.0       3.7   1.9e+03     161     177 ..     146     162 ..     141     165 .. 0.78
   3 !    6.9   0.0    0.0015      0.78     184     250 ..     243     317 ..     240     318 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.3e-09
    TIGR02427  13 kpvlvlinSLGtdlrlwdkvlealt.kdfrvlryDkrGHGlSdvpe..gpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealv 108
                  +p++ ++     +   w+++l+a + k +r ++ D rG G+ d+pe  + y i  la+dvl+ll alg  + +++G   G  +a +La+ +p+ +++l 
  MMETSP1174-20130828|21891_1  11 DPIVFFLHGWPESWFSWRHQLKACAkKGWRGIAPDLRGYGSTDAPEemAAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLC 109
                  555556666666666799999987615699**************98335799*****************************************999885 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 3.7
    TIGR02427 161 vrnmlveqppegYaatc 177
                  +++ l e +++gYaa++
  MMETSP1174-20130828|21891_1 146 LHHNLHESATAGYAANT 162
                  56678888999999985 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0015
    TIGR02427 184 dlrerle..eiavPtlviaGdeDgstP....pelvreiadlvpgarfaei..eeaaHlpnleqpeafaallrdfl 250
                  +++ +l+  +++ P+l +aG+ D++       + ++e  ++v  a ++ +  ++ +H  + e+p++++++l +f+
  MMETSP1174-20130828|21891_1 243 EITPQLKdlKLTQPVLFLAGEADPVIKnfggSARAEEGMKAVCAAGYEGVfyPQKGHWIQQESPQEVNNALFNFM 317
                  5556666114567***********9752111467788889999999987633569*****************998 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.5e-10   7.5e-08      14     109 ..      12     109 ..       2     116 .. 0.84
   2 ?   -0.9   0.0      0.35   1.8e+02     233     257 ..     295     319 ..     242     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.5e-10
    TIGR03611  14 evvvlssGLGGsgsywapqlevleqe.frvvvyDhrGtgrspe.elaedysiaalaadvlelldaldiekahvvGhalGgliglelalrkperlaklv 109
                  ++v +  G   s   w  ql++ +++ +r +  D rG g + + e  + y+i  la dvl ll+al+ +++ +vGh  G++++ +lal +p+   +l 
  MMETSP1174-20130828|21891_1  12 PIVFFLHGWPESWFSWRHQLKACAKKgWRGIAPDLRGYGSTDApEEMAAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLC 109
                  6677777777777789****9986544**********998754133467******************************************9888776 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.35
    TIGR03611 233 eyGghasnvtdpetfnellldfLas 257
                  +  gh ++   p+++n++l +f+++
  MMETSP1174-20130828|21891_1 295 PQKGHWIQQESPQEVNNALFNFMET 319
                  5568888888999999999999865 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06   0.00079      30     133 ..      10     112 ..       1     144 [. 0.82
   2 ?    2.4   0.0     0.032        16     256     280 ..     293     317 ..     242     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-06
    TIGR03343  30 gea.vimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksdevv.mdeqrglvnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmg 133
                  g+  v +lhg  p    w  + ++++a ++ g+r i  d  g+  +d+   m        a  v gl+ al+  ++ lvg   g   a ++al +p+    l  m 
  MMETSP1174-20130828|21891_1  10 GDPiVFFLHG-WP--ESWFSWRHQLKACAKKGWRGIAPDLRGYGSTDAPEeMAAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLCAMS 112
                  4441344554.44..46999999************************9751555555667999**********************************999998886 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.032
    TIGR03343 256 vfsrcghwaqwehadafnrlvidfl 280
                   +++ ghw q e  ++ n   ++f+
  MMETSP1174-20130828|21891_1 293 FYPQKGHWIQQESPQEVNNALFNFM 317
                  46899************99999887 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.6e-06    0.0018      20     124 ..       7     108 ..       1     114 [. 0.89
   2 ?    2.4   0.0      0.04        21     220     244 ..     241     267 ..     227     318 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.6e-06
    TIGR01250  20 keegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgl 124
                  ++ g +  +  lHG P s     ++lk+ +k+g + i  D  G g  d P++     ++i     ++  +  +L+ ++  l+g+ +G+ La + al  ++  ++l
  MMETSP1174-20130828|21891_1   7 GNVG-DPIVFFLHGWPESWFSWRHQLKACAKKGWRGIAPDLRGYGSTDAPEE--MAAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSL 108
                  4444.777999***************************************88..568***********************************9999888877776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.04
    TIGR01250 220 dwditdklkeIkv..PtLltvgefdem 244
                  dw+it +lk++k+  P L+  ge d +
  MMETSP1174-20130828|21891_1 241 DWEITPQLKDLKLtqPVLFLAGEADPV 267
                  9********9875559******99976 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06   0.00067      21     128 ..       5     113 ..       1     136 [. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
    TIGR01249  21 esGnPdGkPvv.flhGGPGsGtd.eecrkffdpevyrivlldqrGaGkskphaileenttwdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlrgi 128
                  ++Gn  G P+v flhG P s  +  + +k    + +r +  d rG G + + + +   + + l  d+  l  +l+ ++ ++ G   G+ la   a  hP++   l   ++
  MMETSP1174-20130828|21891_1   5 DTGNV-GDPIVfFLHGWPESWFSwRHQLKACAKKGWRGIAPDLRGYGSTDAPEEMAAYNIYSLAGDVLGLLTALGGTQCMLVGHDHGANLAWKLALLHPNVFRSLCAMSV 113
                  56664.66655279******977356789999999***************999999********************************************9998876665 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.5e-06    0.0018       5      96 ..      12     111 ..       8     123 .. 0.77
   2 ?   -1.5   0.0      0.68   3.5e+02     186     202 ..     252     268 ..     242     273 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.5e-06
    TIGR01738   5 kklvLihGWglnaevfad.lveeLsahftlslvDLPGyGd...saelralslaevaeail...aqa.pakaiwlGWsLGGLvalhlalthpdkvrsLvlv 96 
                  + ++ +hGW      +++ l+   ++ ++  + DL GyG+    +e+ a ++  +a  +l    +   ++ +++G   G  +a +lal hp+  rsL+ +
  MMETSP1174-20130828|21891_1  12 PIVFFLHGWPESWFSWRHqLKACAKKGWRGIAPDLRGYGStdaPEEMAAYNIYSLAGDVLgllTALgGTQCMLVGHDHGANLAWKLALLHPNVFRSLCAM 111
                  56889*****99999986155556778************854234677777777666554111443157899*************************976 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.68
    TIGR01738 186 kisvPvLrlyGqkDalv 202
                  k++ PvL l+G+ D ++
  MMETSP1174-20130828|21891_1 252 KLTQPVLFLAGEADPVI 268
                  6899********99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 1465.08
//
Query:       MMETSP1174-20130828|21894_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|21895_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.9   0.3        1.1    6.3   0.2    2.0  2  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0015       5.9      56      83 ..      26      53 ..      10      59 .. 0.83
   2 ?    6.3   0.2   0.00028       1.1     232     277 ..      62     111 ..      56     114 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0015
    TIGR01692 56 vitmlPagkhvesvyagdegilakvkkk 83
                 v+  lPag+ v++ y +  +i  kv kk
  MMETSP1174-20130828|21895_1 26 VLKPLPAGTGVNATYIACSDIKGKVPKK 53
                 56679*******************9997 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00028
    TIGR01692 232 gGfatalmlkdlgl.....aqeaaksvkasvllGalarelyslfaskgagk 277
                    fa+ l+ +dl+      a++ a+++k+++ l a a+ely+++a+++ +k
  MMETSP1174-20130828|21895_1  62 DAFAVCLLRQDLDTkhklkAKQMAQEAKTPLSL-ARAEELYKQVAEANIKK 111
                  568888888888642222366677777777777.89*******99887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 553.50
//
Query:       MMETSP1174-20130828|21896_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 599.03
//
Query:       MMETSP1174-20130828|21898_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1174-20130828|21899_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1174-20130828|21901_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 559.82
//
Query:       MMETSP1174-20130828|21900_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-06   23.3   0.3    1.4e-05   22.5   0.2    1.3  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
    4.1e-05   20.8   0.0     0.0001   19.6   0.0    1.8  1  TIGR00478 tly: hemolysin TlyA family protein
  ------ inclusion threshold ------
      0.018   13.3   0.1       0.03   12.6   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2     1e-08   1.4e-05      35      69 ..     121     153 ..     113     174 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1e-08
    TIGR00438  35 lvldlGaaPGGWsqvavekvgekGlviavdlqpvk 69 
                   vldlGa+PGGWsq  +++     +v+avd   + 
  MMETSP1174-20130828|21900_1 121 AVLDLGASPGGWSQWLLQHGVA--QVVAVDPAAIA 153
                  69*************9987655..79999976665 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.4e-08    0.0001      76     107 ..     119     150 ..     114     259 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 7.4e-08
    TIGR00478  76 nkivlDvGsStGGFtdcalqkGAkkvygvdvg 107
                  +  vlD+G+S GG+++ +lq+G  +v +vd +
  MMETSP1174-20130828|21900_1 119 DCAVLDLGASPGGWSQWLLQHGVAQVVAVDPA 150
                  5579*************************965 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05      0.03       2      32 ..     122     151 ..     121     156 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.2e-05
    TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlp 32 
                  v+D GA+ G +s ++++++   +v+a++P+ 
  MMETSP1174-20130828|21900_1 122 VLDLGASPGGWSQWLLQHGVA-QVVAVDPAA 151
                  89******************7.*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 856.32
//
Query:       MMETSP1174-20130828|21904_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 124.23
//
Query:       MMETSP1174-20130828|21902_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1410.92
//
Query:       MMETSP1174-20130828|21905_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033    9.7  22.2      0.036    9.6  15.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.17    9.7  13.1       0.19    9.5   9.1    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.18    8.5   8.2       0.25    8.1   5.7    1.2  1  TIGR00414 serS: serine--tRNA ligase
       0.19   10.2   5.2          5    5.6   1.7    2.3  2  TIGR00058 Hemerythrin: hemerythrin family non-heme iron proteins
        0.7    7.8   7.5       0.25    9.2   2.1    2.0  2  TIGR02833 spore_III_AB: stage III sporulation protein AB
        1.1    6.3   9.2       0.77    6.8   5.1    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  15.4   5.2e-05     0.036     232     380 ..      13     164 ..       2     178 .] 0.46

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 5.2e-05
    TIGR02168 232 lrleelkeeleeleeelke..aeeeleeleaelkeleeeleelrleksele.eeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleee 380
                  +++e+l++e e+ e+++++  a e  +  +a ++el + ++e++++++e e +++++l++  +++++e++ l ++++++k++l+++e ++ e+ee+l++ + kk  + + + +l+e++ +++ + +++ +++++a+ + ee+ +++ +  e 
  MMETSP1174-20130828|21905_1  13 QQIEALRREKETHEDAASRtlAVEVKKMNDAHAAELASLIDEHEKAFQESEdDAIRALNSHSHSHAEELESLRSSVQRHKAELSEVEGKYGEVEEELNRMRLKKSSDLQVVRKLNERMGQVQRSKADELQKVTQAHLASEEAAAHALSIVES 164
                  33444444444333333221022222223334444455555555555544313345555555555555555555555555555555555555555555555555555555555555555555555555555555554444444444444333 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   9.1   0.00028      0.19      56     184 ..      19     152 ..       3     170 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00028
    TIGR03499  56 sasaaseeeeakkaleeaepkklskaeekeekekeaeekaae.aaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklke......kedaeeareklreaLekk 184
                  ++++++ e++a+++l  + +k ++++++++++  + +eka + ++  a ++l++++ +  +el++l++++++  +el  +e +++  +++++l ++ ++++   ++++kl+e      +++a+e+++ ++++L+++
  MMETSP1174-20130828|21905_1  19 RREKETHEDAASRTLAVEVKKMNDAHAAELASLIDEHEKAFQeSEDDAIRALNSHSHSHAEELESLRSSVQRHKAEL--SEVEGKYGEVEEELNRMRLKKSSDLQVVRKLNErmgqvqRSKADELQKVTQAHLASE 152
                  34455666666666666666666666555555444444444303444444555555999*****************9..566667777777777777766666666666666554477677777777777777654 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.7   0.00036      0.25      22     109 ..      32     120 ..       9     173 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00036
    TIGR00414  22 glsveidleklsel.ddklkkllskie.elqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllk.ipnl 109
                   l+ve  ++k+ ++ +++l  l+ + e   q+ +   +++++++++++++++e+l+  ++++k el+e+e ++ e+eeel+++ lk +++l
  MMETSP1174-20130828|21905_1  32 TLAVE--VKKMNDAhAAELASLIDEHEkAFQESEDDAIRALNSHSHSHAEELESLRSSVQRHKAELSEVEGKYGEVEEELNRMRLKkSSDL 120
                  33222..222222201222222223220334455556666666666666667778888888888888888888888888887766413444 PP

>> TIGR00058  Hemerythrin: hemerythrin family non-heme iron proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.7    0.0074         5      34      92 ..      41      99 ..      20     105 .. 0.79
   2 ?    5.1   0.0      0.01         7      33      62 ..     130     159 ..     113     167 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0074
    TIGR00058 34 esesadalkelidvvtkhfkdeealmekakysevkehkkahedflaklkglkapvaddd 92
                 ++  a +l +lid  +k f++ e+   +a  s++++h ++ e   ++++  ka +++ +
  MMETSP1174-20130828|21905_1 41 NDAHAAELASLIDEHEKAFQESEDDAIRALNSHSHSHAEELESLRSSVQRHKAELSEVE 99
                 34447889999999999999999999999999999999999999999999998777665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.01
    TIGR00058  33 aesesadalkelidvvtkhfkdeealmeka 62 
                    + + ++ +el +v+++h ++eea+ ++ 
  MMETSP1174-20130828|21905_1 130 MGQVQRSKADELQKVTQAHLASEEAAAHAL 159
                  4455578899**************987765 PP

>> TIGR02833  spore_III_AB: stage III sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4      0.13        87      74     115 ..      29      72 ..      17     104 .. 0.64
   2 ?    9.2   2.1   0.00037      0.25      92     144 ..     104     157 ..      69     165 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.13
    TIGR02833  74 serlkekevetvkeafkkalke..kkkktaLkkeekeillqlgk 115
                  ++r    ev+++++a ++ l+   ++++ a++++e + +++l  
  MMETSP1174-20130828|21905_1  29 ASRTLAVEVKKMNDAHAAELASliDEHEKAFQESEDDAIRALNS 72 
                  45545556677777777777662234556788888888877765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00037
    TIGR02833  92 alkekkkktaLkk.eekeillqlgktlGesdveeqqkhlrltlekLeaelaeae 144
                   ++e+ +++ Lkk ++ +++++l + +G+  + +     + t ++L+ e+a a+
  MMETSP1174-20130828|21905_1 104 EVEEELNRMRLKKsSDLQVVRKLNERMGQVQRSKADELQKVTQAHLASEEAAAH 157
                  57888999999873699********************************99987 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.1    0.0011      0.77      22     132 ..      37     151 ..      28     172 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0011
    TIGR03752  22 ikslskseeeeq.....tadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleell 132
                  +k+++ ++++e      +++ka +e+  + ++al  +    ++ l  l ++++ ++ el+++e +  ++++e +r++ + +s d ++ ++l+    +++++k    +++++++ ++
  MMETSP1174-20130828|21905_1  37 VKKMNDAHAAELaslidEHEKAFQESEDDAIRALNSHSHSHAEELESLRSSVQRHKAELSEVEGKYGEVEEELNRMRLK-KSSDLQVVRKLNERMGQVQRSKADELQKVTQAHLAS 151
                  5555555554445667677888888999999999999999999999999999999999999999999999999988876.455666666666655555555444333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       388  (0.094588); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|21906_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|21907_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|21910_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 578.02
//
Query:       MMETSP1174-20130828|21909_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1439.00
//
Query:       MMETSP1174-20130828|21913_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.3   1.7     0.0061   14.0   0.1    2.7  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00029   18.7   0.0    0.00029   18.7   0.0    4.5  5  TIGR03504 FimV_Cterm: FimV C-terminal domain
     0.0025   16.3   0.0       0.23    9.9   0.0    2.4  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.027   12.4   0.4       0.17    9.8   0.0    2.3  3  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   5.9e-06    0.0061      27      96 ..      25     102 ..      10     108 .. 0.80
   2 ?    2.4   0.1      0.02        21     146     167 ..     169     190 ..     162     207 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.9e-06
    TIGR02521  27 rekaakirvqLaleYleqgdlekAkenlekAl........eldpkdadanlalAlyyqqlgelekAeesfrkAltlkp 96 
                     ++++  +La +Y ++gdl+ A + l + +        + dp+   a + lA+++ ++g+ ++A+e f +A++l  
  MMETSP1174-20130828|21913_1  25 SRPVVRASFDLASAYRANGDLNMALALLSEIVtinqevlpQNDPEIPIAMNNLAVMLRNTGQYDAAAEVFSEAVRLLR 102
                  5567888999**************999988873333223345788889999***********************9865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.02
    TIGR02521 146 lkagdtekaekyltralkidpk 167
                  l+++d++ a+++l++al+++++
  MMETSP1174-20130828|21913_1 169 LSENDVDAARSALEEALDMQEE 190
                  4555556666666666655543 PP

>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   1.8e+03      14      27 ..       2      15 ..       2      16 .. 0.81
   2 !   18.7   0.0   2.9e-07   0.00029       2      28 ..      32      58 ..      31      69 .. 0.88
   3 ?   -0.1   0.0      0.21   2.2e+02       5      26 ..      77      98 ..      76     104 .. 0.77
   4 ?    0.4   0.2      0.14   1.5e+02      17      27 ..     133     143 ..     131     162 .. 0.77
   5 ?    3.0   0.7     0.022        23      13      27 ..     172     186 ..     165     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.7
    TIGR03504 14 DkegArelLeEVie 27
                 D+ gA+++  E +e
  MMETSP1174-20130828|21913_1  2 DSTGAIKVFSEALE 15
                 78899999888876 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.9e-07
    TIGR03504  2 KLDLAkaYiemGDkegArelLeEViee 28
                   DLA aY + GD+  A +lL E++  
  MMETSP1174-20130828|21913_1 32 SFDLASAYRANGDLNMALALLSEIVTI 58
                 58**********************975 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.21
    TIGR03504  5 LAkaYiemGDkegArelLeEVi 26
                 LA +    G  + A e+  E +
  MMETSP1174-20130828|21913_1 77 LAVMLRNTGQYDAAAEVFSEAV 98
                 7888888888888888877765 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.14
    TIGR03504  17 gArelLeEVie 27 
                  +A +lL+E ie
  MMETSP1174-20130828|21913_1 133 EAEDLLREAIE 143
                  67888888876 PP

  == domain 5    score: 3.0 bits;  conditional E-value: 0.022
    TIGR03504  13 GDkegArelLeEVie 27 
                  +D + Ar  LeE ++
  MMETSP1174-20130828|21913_1 172 NDVDAARSALEEALD 186
                  799*********986 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00023      0.23      33     102 ..      23      97 ..       5     105 .. 0.85
   2 ?    4.2   0.0     0.013        14      35      66 ..     155     185 ..     134     199 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00023
    TIGR02795  33 PkstlapnAqYwlGealyakkkykdAakaflevvkky.....pksekapdallklgeslqelgqkekAkktlqev 102
                  P s+ +  A++ l+ a+ a+++++ A +  +e+v+ +     ++++  p a+ +l+++l ++gq ++A ++++e 
  MMETSP1174-20130828|21913_1  23 PASRPVVRASFDLASAYRANGDLNMALALLSEIVTINqevlpQNDPEIPIAMNNLAVMLRNTGQYDAAAEVFSEA 97 
                  677777889999***************999999986622232467999*********************999875 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.013
    TIGR02795  35 stlapnAqYwlGealyakkkykdAakaflevv 66 
                  ++l ++A  wl+eal +++++++A  a +e++
  MMETSP1174-20130828|21913_1 155 DDLLADALVWLAEAL-SENDVDAARSALEEAL 185
                  567888888888886.4567777777776665 PP

>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00017      0.17      20      41 ..      84     105 ..      81     115 .. 0.92
   2 ?   -2.3   0.0         1     1e+03      45      52 ..     136     143 ..     124     166 .. 0.60
   3 ?   -0.7   0.1      0.33   3.4e+02      41      52 ..     175     186 ..     149     203 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00017
    TIGR02606  20 sGrYgsaSEVvRaaLRlleerE 41 
                  +G Y  a EV  +a+Rll+e++
  MMETSP1174-20130828|21913_1  84 TGQYDAAAEVFSEAVRLLRESQ 105
                  7*****************9975 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1
    TIGR02606  45 eaLraaiq 52 
                  + Lr+ai+
  MMETSP1174-20130828|21913_1 136 DLLREAIE 143
                  33444443 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.33
    TIGR02606  41 EarleaLraaiq 52 
                  +a++ aL++a++
  MMETSP1174-20130828|21913_1 175 DAARSALEEALD 186
                  223445555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 825.87
//
Query:       MMETSP1174-20130828|21914_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1174-20130828|21918_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 441.66
//
Query:       MMETSP1174-20130828|21916_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 771.63
//
Query:       MMETSP1174-20130828|21922_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 273.88
//
Query:       MMETSP1174-20130828|21926_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|21924_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    4.3  82.3     0.0063   12.1  28.7    3.1  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   4.0    0.0047        19     793     923 ..      26     158 ..       2     212 .. 0.40
   2 ?   12.1  28.7   1.5e-06    0.0063     229     477 ..     247     498 ..     239     512 .. 0.48
   3 ?    0.3  15.8    0.0055        23     692     827 ..     513     648 ..     491     688 .. 0.39

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.0047
    TIGR02168 793 ieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeiee....l.eeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelr 923
                  + +l++++k++++a s + a  ++ ++  +++ +   +l+k+++ +e ++ ++++++++ ++ +  +++ +++    + e + ++l +el+ ++k+    +++ +++r+++e+ + e+++le++++++  +l+++ 
  MMETSP1174-20130828|21924_1  26 MINLNDSAKQNTTAASTAAAVTEADDIPREDLLHLTMKLSKRLKTQEAQAAKIKAAFKKSSAFVNGVRNWVKHdvleCvEPAPSDLLDELAGWQKSW---STQEQSRRDQMEAYRGEVNKLEDDKDQAIVDLSSAH 158
                  3333333333333333333333333333333333333344444444444444444444433333333222222000020122223333333333333...233333444444444444444444444433333221 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.5e-06
    TIGR02168 229 llvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerle.qlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaelee.lesrl.eeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeq 477
                  +l +++  l+++ ++l++el+++e+el++++  l++ +++l+e++++    +++l+++ ++  +++ + ++l  + e+    l+ ql++ +e  ++ + ++ +k+ ++e ela++ + + e ++ +++ +ae++e+++ + e + + + +   ee +   +e  +l++++as++a + r++ e e++++ ++  ++ + +l+++++++e+ +kelqee+++ +e+++ ++ee++++ e+l+   ++  +++ 
  MMETSP1174-20130828|21924_1 247 VLGAQVLTLQSKCDSLQAELRRQERELSQARMVLSREQKKLSEKEEALGACQNRLDDALEAAASAEHARRELGVQHEERMVYLQlQLKNGKEDSSKLVSNHVAKLSDKESELAAQMALTIEKENIIKRHQAEINELRRSIPEeMVRYKaQMDAEESRLTGKEAEQLRSEVASNRALVARMRIEAEAADKAHATRTALVGTLQAQITALEEPMKELQEEIASAREAEKCAKEEKQKMGEKLKLEGDRAVRLKA 498
                  455555555555555555555555555555555555555555555555555555555555555555555554433333322222134444444444444555555555555555555555555555555555555554443312222202222333333344455555555555555555555555555555555555555555555555555555555555555555555555555555554444333333 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.0055
    TIGR02168 692 eekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeer 827
                   e ++++ k+ +e+ k +e+ + + + +r+  +e+e  ++ l ke+e+l++eve+  +  +++ +  + ++ +++  + + +e + el+++ +e++e e+++  ++++++++r++ s+l++  +++  +++ +++ 
  MMETSP1174-20130828|21924_1 513 SEMVRQIAKQDAEVLKLREDHKGKSSLARQLVTEKEATIEILTKEVEELRSEVETGGHSERKIMELAKAQAVRETDRDIQANEDRRELERVTRELKEKESSLLSANRAVSDIRSEASDLRRVSKREGVNMEYLKNI 648
                  2222222222222222222222222333333333333444444444444444444444433333333333333344444444444444444444444444444444444444444444444444333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       414  (0.100926); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.20s 00:00:00.98 Elapsed: 00:00:00.74
# Mc/sec: 1287.79
//
Query:       MMETSP1174-20130828|21927_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|21929_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|21930_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1807.52
//
Query:       MMETSP1174-20130828|21931_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 229.55
//
Query:       MMETSP1174-20130828|21932_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 441.22
//
Query:       MMETSP1174-20130828|21933_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1005.85
//
Query:       MMETSP1174-20130828|21935_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1297.89
//
Query:       MMETSP1174-20130828|21938_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.6   0.0       0.16    9.6   0.0    1.9  2  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.17   6.9e+02     118     136 ..     125     143 ..     123     149 .. 0.78
   2 ?    9.6   0.0   3.9e-05      0.16     161     198 ..     183     220 ..     175     221 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.17
    TIGR02466 118 viSgvyYvqtpenasaikl 136
                  +i  +  v+t+e+++ai+l
  MMETSP1174-20130828|21938_1 125 LICNIPTVNTNEDNGAIEL 143
                  5666667999*******98 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 3.9e-05
    TIGR02466 161 fvkvkPqegrvllfeswLrHeVtpneseeeRisvSfnl 198
                  fv +  ++g+vll +  L H  + n s+++R+ vS  +
  MMETSP1174-20130828|21938_1 183 FVRACTDKGDVLLRDRRLWHRGKANSSKSPRMMVSLTY 220
                  55555899***************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1201.10
//
Query:       MMETSP1174-20130828|21940_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 848.50
//
Query:       MMETSP1174-20130828|21939_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 2636.31
//
Query:       MMETSP1174-20130828|21941_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   21.0   0.0    7.7e-05   20.2   0.0    1.3  1  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID
  ------ inclusion threshold ------
      0.011   13.4   0.0      0.018   12.7   0.0    1.3  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.7e-08   7.7e-05     113     178 ..     248     314 ..     239     327 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.7e-08
    TIGR02245 113 vkplgviwa...klkefyskkntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkki 178
                  v+ +  iw+   + +  ++ +nt+m+dd +r +   p n + i+ fk+++  +++d  + +l+ yl ++
  MMETSP1174-20130828|21941_1 248 VRDMHKIWTtkgRAGYGFNARNTVMVDDSSRKMRQFPGNLVLIPEFKRQE--HYKDGTMDRLSTYLSSL 314
                  56677788744334445899**************************9986..57778888999999876 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.6e-06     0.018     114     167 ..     268     325 ..     258     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.6e-06
    TIGR02251 114 skvviiDnsplsyslqpeNaipiksfis..denDeeLlklipflea..lrkeddvrsl 167
                  +++v++D+s+ +++++p N + i +f      +D  + +l  +l +   ++ ddvr+l
  MMETSP1174-20130828|21941_1 268 RNTVMVDDSSRKMRQFPGNLVLIPEFKRqeHYKDGTMDRLSTYLSSllSQTGDDVRPL 325
                  689***********************98334579899999999999744566899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1327.89
//
Query:       MMETSP1174-20130828|21942_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 1988.09
//
Query:       MMETSP1174-20130828|21944_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|21947_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-65  220.3   0.0    3.4e-51  172.3   0.0    2.0  2  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)
    8.6e-14   49.2   0.5    2.8e-10   37.6   0.0    2.8  2  TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
      5e-12   43.3   0.0    6.5e-06   23.1   0.0    2.1  2  TIGR02776 NHEJ_ligase_prk: DNA ligase D
    6.6e-12   43.1   0.0    2.1e-05   21.7   0.0    2.3  2  TIGR02779 NHEJ_ligase_lig: DNA polymerase LigD, ligase domain


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   6.4e-16   6.6e-13     272     338 ..       3      68 ..       1      74 [. 0.90
   2 !  172.3   0.0   3.3e-54   3.4e-51     333     526 ..     131     336 ..     124     337 .. 0.91

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 6.4e-16
    TIGR00574 272 rkkdiksaekkvqvclfvFDiLylngksLtdeplaeRreiLesilkeipnrieivekkqvssnaeei 338
                  ++k  ++ae +vqv + +FD+Lylng+sL  +pl+eRr+ + + +ke+++r+ +++k++v +   ++
  MMETSP1174-20130828|21947_1   3 KRKAEDAAEVEVQVIVQAFDLLYLNGESLLRKPLIERRQSMYDTFKEVEGRFTFAQKRDV-DLRTDV 68 
                  56678999**************************************************99.555555 PP

  == domain 2    score: 172.3 bits;  conditional E-value: 3.3e-54
    TIGR00574 333 snaeeiekflneaisegcEGlvvKnlk...siYepgkRgenwlKvkpeyleel..gdnlDLvviGaylGkgkrtglygsfllavadeeseefktiekvgtGltdaeLeklgeklkklwid..ksesavleilsrsadekdirvdksivvevtlaeltespaykankskka.....gislRfPrllrirsDkepedatnieeikely 526
                  ++++ i++f+neai+ +cEGl+vK+l    ++Yep+ R+ nwlK+k++y+ e+  gd+lDLv iGay+Gkg+rt++yg +l+a+ d+e+++f+ ++k+gtG++d+ L+ l+ k +k+ +   +  +++l+  +  +  +d+ ++   v+ev++a+l+ s+++k + +k       gi lRfPr++r r+Dk+pe at++ ++ ++y
  MMETSP1174-20130828|21947_1 131 DGVQMIADFMNEAIKGSCEGLMVKTLYgtkATYEPSVRSLNWLKLKKDYMDEFggGDSLDLVPIGAYWGKGRRTNVYGAYLCACFDPETDQFQSVCKLGTGFSDDVLKSLSVKFSKEGMAlpEGSKKPLNYHLGDSLSPDVYFHARCVFEVKAADLSLSSTHKGGIGKPRipsgrGIGLRFPRFIREREDKNPEHATSAGQVVDMY 336
                  677889*******************98888*********************99445**********************************************************99755410445556655555589***************************988888999********************************9 PP

>> TIGR04120  DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00015      0.15     303     342 ..      12      51 ..       1      72 [. 0.82
   2 !   37.6   0.0   2.8e-13   2.8e-10     359     519 ..     135     329 ..     116     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00015
    TIGR04120 303 aelPavvraYDlLeeegeDlRalpfeeRrarLealvarle 342
                   e+ ++v+a+DlL+ +ge l  +p+ eRr+ +  +++++e
  MMETSP1174-20130828|21947_1  12 VEVQVIVQAFDLLYLNGESLLRKPLIERRQSMYDTFKEVE 51 
                  478899************************9998888776 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 2.8e-13
    TIGR04120 359 elaalRaesrsagieGlmlkr...rdsaYlaGRkkglWfkWkrdPl.......lvDavllYaqrGhGkRsslysDytfgvwdeeeeeeelvPvgkaYsGftDeelkkld.kfvRkntierfGPvrevkke..............lvlevafegiqrskRhksG...........valRfPRisRlReDkpaaeadrl 519
                   +a+  +e+ + + eGlm+k    + ++Y +  +  +W k k+d +       ++D v + a  G+G+R+++y  y  +++d   e++++  v k   Gf D+ lk+l  kf ++      G  + ++++               v+ev    +  s+ hk G           + lRfPR+ R ReDk  + a + 
  MMETSP1174-20130828|21947_1 135 MIADFMNEAIKGSCEGLMVKTlygTKATYEPSVRSLNWLKLKKDYMdefgggdSLDLVPIGAYWGKGRRTNVYGAYLCACFDP--ETDQFQSVCKLGTGFSDDVLKSLSvKFSKEGMALPEGSKKPLNYHlgdslspdvyfharCVFEVKAADLSLSSTHKGGigkpripsgrgIGLRFPRFIREREDKNPEHATSA 329
                  5667777888889*******83335899***************987444555579**************************99..899999*****************8345555555556777777776777888889998889****************7622222222222679*************9999765 PP

>> TIGR02776  NHEJ_ligase_prk: DNA ligase D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.9e-07    0.0002      83     125 ..      11      53 ..       4      75 .. 0.80
   2 !   23.1   0.0   6.4e-09   6.5e-06     142     262 ..     138     273 ..     116     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.9e-07
    TIGR02776  83 gakekllylaFDlleleGedlralpleeRkkrLkellkaakld 125
                  + + +++  aFDll+l+Ge+l + pl eR++++ +  k+ +++
  MMETSP1174-20130828|21947_1  11 EVEVQVIVQAFDLLYLNGESLLRKPLIERRQSMYDTFKEVEGR 53 
                  455678899**************************99998876 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 6.4e-09
    TIGR02776 142 allesacklklEGvvaKr...adsaYrsg.rskdWlKlKcrkrqev.........vitgytesngark.lgallvgvye..egelkyvgkvgtGfeaeelkellkrlkaleakasplekkaakkkkgvhwvkPelva 262
                  + +++a+k + EG++ K    ++++Y+   rs +WlKlK    +e+          i++y  +    +  ga l++ ++   ++ + v k+gtGf+++ lk+l  ++++ +++  + +kk+ + + g   ++P++ +
  MMETSP1174-20130828|21947_1 138 DFMNEAIKGSCEGLMVKTlygTKATYEPSvRSLNWLKLKKDYMDEFgggdsldlvPIGAYWGKGRRTNvYGAYLCACFDpeTDQFQSVCKLGTGFSDDVLKSLSVKFSKEGMALPEGSKKPLNYHLG-DSLSPDVYF 273
                  678999***********844459****999*********9988876433333332599998887666679********99999************************99999754444444433333.456665555 PP

>> TIGR02779  NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.2e-07   0.00013      96     136 ..      15      55 ..       2      76 .. 0.79
   2 !   21.7   0.0   2.1e-08   2.1e-05     148     243 ..     136     246 ..     119     287 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.2e-07
    TIGR02779  96 pltylaFDlleldgedlrdlplseRkklLeellkeakakla 136
                  +++  aFDll+l+ge+l + pl eR++++ +  ke +++ +
  MMETSP1174-20130828|21947_1  15 QVIVQAFDLLYLNGESLLRKPLIERRQSMYDTFKEVEGRFT 55 
                  566779**********************9999998887764 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.1e-08
    TIGR02779 148 gqalleaavklglEGvvaKr...kdsrYrsgr.skdWlKlKnrkrqev.........vivgYtesngsrsklgaLllavyedgk..lryvGkvgtGfseaelkalkerlke 243
                  +++++++a+k + EG+  K    ++++Y++   s +WlKlK+   +e+          i++Y  +  + +  ga l a  + +   ++ v k gtGfs++ lk+l+ ++ +
  MMETSP1174-20130828|21947_1 136 IADFMNEAIKGSCEGLMVKTlygTKATYEPSVrSLNWLKLKKDYMDEFgggdsldlvPIGAYWGKGRRTNVYGAYLCACFDPETdqFQSVCKLGTGFSDDVLKSLSVKFSK 246
                  6788999************8444689***9877********9877765333333332699998766555889******99876667*******************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 1620.28
//
Query:       MMETSP1174-20130828|21949_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-11   42.6   0.0      2e-11   42.0   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    2.2e-07   28.3   0.0    1.5e-06   25.6   0.0    1.5  2  TIGR03448 mycothiol_MshD: mycothiol synthase
    9.4e-07   25.5   0.0    1.2e-06   25.2   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
    0.00053   18.0   0.0    0.00082   17.3   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   1.9e-14     2e-11      58     115 ..     130     187 ..      96     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.9e-14
    TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkei 115
                  ++n+av+++ +++GiG+ L++e ++ a+  g +e++L V e+N  A+aLY+ lg++e 
  MMETSP1174-20130828|21949_1 130 LSNLAVRENRRRRGIGSLLMQECENAAQRWGFTEVVLQVEEDNREARALYQALGYREL 187
                  679****************************************************986 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00041      0.42      69      99 ..     125     155 ..      74     159 .. 0.77
   2 !   25.6   0.0   1.5e-09   1.5e-06     234     291 ..     133     190 ..     120     193 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00041
    TIGR03448  69 dadsemaElvvhPaaRrrGigkalvrallak 99 
                  d+ +  ++l+v  ++RrrGig+ l+++  ++
  MMETSP1174-20130828|21949_1 125 DERPVLSNLAVRENRRRRGIGSLLMQECENA 155
                  55667789****************9987654 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.5e-09
    TIGR03448 234 vgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtvaevd 291
                  ++v+++ ++rG+G++L++   +  ++ g ++v+L ve+dn+ A ++Y++Lg+    +d
  MMETSP1174-20130828|21949_1 133 LAVRENRRRRGIGSLLMQECENAAQRWGFTEVVLQVEEDNREARALYQALGYRELFTD 190
                  68999**************99999999************************9876655 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-09   1.2e-06     117     215 ..      83     187 ..      55     198 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 1.2e-09
    TIGR03103 117 eresraivylvaedeesgeiv.G.....tvmgvdhekafddpekGsslWalavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialyeklgfrri 215
                  +r s++i++ v+e +++gei+ G        g+     +   ++   l  lav  + ++ G+G  l+++  +  q  g + + l v  dn++a aly+ lg+r++
  MMETSP1174-20130828|21949_1  83 NRPSKSILFKVTEMDATGEIIiGfaelsMCRGLRVCSTLPVLDERPVLSNLAVRENRRRRGIGSLLMQECENAAQRWGFTEVVLQVEEDNREARALYQALGYREL 187
                  5778888999998888888752422211334666666667778888999*****************************************************987 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     8e-07   0.00082      87     134 ..     140     185 ..     129     199 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8e-07
    TIGR03585  87 kvkkgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfe 134
                      g+Gs+l+++ ++ a ++ + +++ l+V e+N +a +ly+  g+ 
  MMETSP1174-20130828|21949_1 140 RR-RGIGSLLMQECENAA-QRWGFTEVVLQVEEDNREARALYQALGYR 185
                  33.5*********99876.568************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1010.40
//
Query:       MMETSP1174-20130828|21951_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|21954_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1174-20130828|21953_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-32  108.8   0.7    4.9e-32  107.8   0.5    1.5  1  TIGR03630 arch_S17P: archaeal ribosomal protein S17P
    6.1e-12   43.3   0.9    6.1e-12   43.3   0.6    1.8  2  TIGR03635 S17_bact: 30S ribosomal protein S17


Domain annotation for each model (and alignments):
>> TIGR03630  arch_S17P: archaeal ribosomal protein S17P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.5   2.4e-35   4.9e-32      12     100 ..      80     169 ..      66     171 .. 0.94

  Alignments for each domain:
  == domain 1    score: 107.8 bits;  conditional E-value: 2.4e-35
    TIGR03630  12 CddekCPfhGelkvrgqvlegkvvkkkmektvvvereylkyvkkyeryekrrskihahlPeCi.evkeGdkvliaetrplsktisfvvle 100
                    d+kCPf G++++rg++l+++v+++km++t++v+r+yl+yvkky+r+ekr++++ +h+ +C+ +vkeGd+v+++++rplskt++f vl 
  MMETSP1174-20130828|21953_1  80 YVDKKCPFTGDVSIRGRILKAMVISTKMKNTAIVRRDYLRYVKKYRRFEKRHKNMAVHVSPCFeNVKEGDVVTVGQCRPLSKTVRFNVLS 169
                  569************************************************************88*********************9986 PP

>> TIGR03635  S17_bact: 30S ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.27   5.6e+02      41      68 ..      28      55 ..      12      57 .. 0.68
   2 !   43.3   0.6     3e-15   6.1e-12       2      71 ..      96     167 ..      95     168 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.27
    TIGR03635 41 kaHDeeneakvGDvVeieetrPlSktKr 68
                  a   e +++  D + i   r + k Kr
  MMETSP1174-20130828|21953_1 28 EADQHEKAYQKQDAIFIGKKRVVGKPKR 55
                 4555666677888888888877777775 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 3e-15
    TIGR03635   2 ktlvGvVvsdkmdktvvVkverkvkhplYkKivkrtkkykaHDe..eneakvGDvVeieetrPlSktKrwrl 71 
                  ++l+  V+s+km++t++V+ +     ++Y+++ kr+k++++H     +++k GDvV++ ++rPlSkt r+++
  MMETSP1174-20130828|21953_1  96 RILKAMVISTKMKNTAIVRRDYLRYVKKYRRFEKRHKNMAVHVSpcFENVKEGDVVTVGQCRPLSKTVRFNV 167
                  677889************************************9866699******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 796.19
//
Query:       MMETSP1174-20130828|21958_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1174-20130828|21957_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1396.53
//
Query:       MMETSP1174-20130828|21956_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 1986.78
//
Query:       MMETSP1174-20130828|21960_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|21962_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|21961_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 981.67
//
Query:       MMETSP1174-20130828|21963_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 863.43
//
Query:       MMETSP1174-20130828|21966_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1196.42
//
Query:       MMETSP1174-20130828|21971_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|21973_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|21976_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|21977_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 617.24
//
Query:       MMETSP1174-20130828|21980_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|21978_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.59
# Mc/sec: 299.77
//
Query:       MMETSP1174-20130828|21981_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1174-20130828|21986_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 168.40
//
Query:       MMETSP1174-20130828|21984_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   18.9   0.0    0.00012   18.8   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     3e-08   0.00012     209     414 ..       2     213 ..       1     262 [. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3e-08
    TIGR02731 209 gapperlcqpivdyitsrggevrlnarlkei.vlned.gsvkafala.dlegkesfevta.dayvsalavdilklllpkp.wkeleffkkleglegvpvinvhlwfdrklt....tvdhllfsrsellsvyadmsetckeyadpdksmlelvlapakdwigrsdeeiieatlkeleklfpdelkadekakllkskvvktprsvykatpgreklrp 414
                  g+  e +  p  + + +rg e +  +r     +l+ed   v + + +  +eg+++fe+++ da v a+   +l+ +   p    ++ f++  +l+g  v+  +lw+dr +           f   + ++v+   +     + ++   +le+ +  a   ++ +d eii  + k l+ ++  e      a ++ ++vv+ p +v    pg +++ p
  MMETSP1174-20130828|21984_1   2 GNIGETIFAPWCKQMAERGVEFKQGVRAVGFqTLEEDpHRVTSVTCRrMGEGEDEFEIDGvDAVVFAVGFGALRSFSRIPaLARFSGFRRFANLRGTDVLATRLWLDREVGskytANACRGFDERTGMTVFDIKALHTPTHDHEPGGVLEVDWYHAGTLLALTDAEIIIEAKKRLDDVIGAECI---AASVIDAAVVRLPGAVNWYFPGSHAFMP 213
                  56677888899999999999999988765541577773456666654157899*****9769************9876652578999*********************8753221334456888888999977777777777777899******************997666666666665555...78999999***99999999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 951.55
//
Query:       MMETSP1174-20130828|21979_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 1203.43
//
Query:       MMETSP1174-20130828|21987_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.45
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|21991_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1330.89
//
Query:       MMETSP1174-20130828|21992_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1225.20
//
Query:       MMETSP1174-20130828|21996_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|21997_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 517.40
//
Query:       MMETSP1174-20130828|21999_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 362.03
//
Query:       MMETSP1174-20130828|22001_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 591.31
//
Query:       MMETSP1174-20130828|22003_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|22002_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 220.78
//
Query:       MMETSP1174-20130828|22000_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.55
# Mc/sec: 746.34
//
Query:       MMETSP1174-20130828|22005_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   39.9   0.4    2.8e-11   39.7   0.3    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      8e-11   38.9   0.0      1e-10   38.6   0.0    1.0  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.5e-10   37.5   0.0    3.1e-10   37.2   0.0    1.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.7e-06   23.4   0.3    4.9e-06   23.0   0.2    1.2  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    4.7e-06   23.4   0.0    5.5e-06   23.2   0.0    1.0  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.7e-05   21.1   0.0    1.9e-05   20.9   0.0    1.1  1  TIGR00631 uvrb: excinuclease ABC subunit B
    3.3e-05   21.0   0.0    3.9e-05   20.7   0.0    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0015   14.4   0.5     0.0045   12.8   0.3    1.6  1  TIGR02621 cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc
     0.0034   13.6   0.0     0.0037   13.4   0.0    1.0  1  TIGR00580 mfd: transcription-repair coupling factor
      0.004   14.0   0.1     0.0046   13.8   0.1    1.1  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.3   6.8e-14   2.8e-11     247     358 ..      43     150 ..      40     168 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 6.8e-14
    TIGR04121 247 karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvpt 358
                  +++++lvF+ tR  +  +   L++  +     +al Hg l++++R+kv a ++ g+ r++v+Ts    G+D   + lv+q++ ++  a    R GR++ +  +   ++lv t
  MMETSP1174-20130828|22005_1  43 AQESCLVFCETRVECAAVATFLTRRGAS---ALAL-HGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPATHTHRTGRTARAGSAGRAVVLVAT 150
                  5789*************99999988776...8898.7***********************************************************9977666666666665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.4e-13     1e-10     224     330 ..      44     150 ..      39     175 .. 0.91

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.4e-13
    TIGR01389 224 eksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                  ++s ++++++R +   +a +L+ +g +ala h+ l++  R++ + +F     +v+vat     G+d      v+ l   ++  ++   +GR  R G +  a++l ++
  MMETSP1174-20130828|22005_1  44 QESCLVFCETRVECAAVATFLTRRGASALALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPATHTHRTGRTARAGSAGRAVVLVAT 150
                  6899**********************************************************************************************999988654 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   7.6e-13   3.1e-10     226     331 ..      44     149 ..      40     169 .. 0.94

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 7.6e-13
    TIGR00614 226 gksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfya 331
                   +s +++C +r ++  va+ L+++g +a+a h  le+ ar++v   f    ++v+vat     G++   +  v+    +++  ++   +GR  R g   ++v++ a
  MMETSP1174-20130828|22005_1  44 QESCLVFCETRVECAAVATFLTRRGASALALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPATHTHRTGRTARAGSAGRAVVLVA 149
                  57889*****************************************************999************************************999999866 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   1.2e-08   4.9e-06     210     302 ..      44     133 ..      38     168 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.2e-08
    TIGR01970 210 sgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvar.fdpksG 302
                   +s Lvf   + e + v+  L+ r + s    + L+Gele  a+d++++    G  +v +at++a   l ++ + +v+  + a+ +  +  ++G
  MMETSP1174-20130828|22005_1  44 QESCLVFCETRVECAAVATFLTRRGA-S---ALALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPAtHTHRTG 133
                  67899999999999999999995544.4...4579*******************************************9876665431333444 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.3e-08   5.5e-06     487     560 ..      73     145 ..      53     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.3e-08
    TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksycl 560
                   lhg l++  +++vl+ Fr +++ +LvaT+v   G+dv  ++++v  ++     +  H   GR +R   ++ ++
  MMETSP1174-20130828|22005_1  73 ALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPATHTHR-TGRTARAGSAGRAV 145
                  58****************************************99988777766666665.47777776665543 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.7e-08   1.9e-05     442     519 ..      43     120 ..      36     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.7e-08
    TIGR00631 442 knervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailD 519
                   +e  lv   t+  +  ++ +l+++g  +  lh e++   r +++  +r g++ vlv   +   GlD+   slv  l 
  MMETSP1174-20130828|22005_1  43 AQESCLVFCETRVECAAVATFLTRRGASALALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLA 120
                  57888999999999999*********************************************************8775 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.5e-08   3.9e-05     252     334 ..      72     151 ..      40     171 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 9.5e-08
    TIGR01587 252 iLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisvdvlitelapid...sLiQRlGRlaRygrkirenrevyvlte 334
                  + lH+   ++ r k     l+ ++    +v+vaT v+  +lD+++ +l+ +lap+      + R GR aR g   r    v v+t 
  MMETSP1174-20130828|22005_1  72 LALHGELEQTARDKV----LACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQdpaTHTHRTGRTARAGSAGR--AVVLVATS 151
                  667888888777655....999999999**************************973335789*******666555..44444444 PP

>> TIGR02621  cas3_GSU0051: CRISPR-associated helicase Cas3, subtype Dpsyc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   1.1e-05    0.0045     282     408 ..      44     156 ..      19     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.1e-05
    TIGR02621 282 geailVfvrtvdevkkvvakLkkearrledltgtvrglerdtlarkgeilarflppsrtgsearpqqgtvyvVaTsalEVGvdldfdhLvtdlapie...slvqRfGRvnRlGerldaeiavVhstlgkd 408
                  +e+ lVf++t  e  +v+ +L +       l g+++   rd      ++la f      gs         ++VaTs    G d+d   Lv +lap++   + + R GR  R G  + a + v  s+ +++
  MMETSP1174-20130828|22005_1  44 QESCLVFCETRVECAAVATFLTRRGASALALHGELEQTARD------KVLACFRG----GS-------CRVLVATSVASRGLDVDSLSLVVQLAPAQdpaTHTHRTGRTARAGSAGRAVVLVATSPKTRG 156
                  56777788887777888888777776777777777777777......34433322....22.......458************************973335679**********8888888877777665 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     9e-06    0.0037     688     737 ..      72     120 ..      67     179 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9e-06
    TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierA 737
                     Hg++e+   ++v+  F  ++  vLv+T++   G+d+ +   ++++ A
  MMETSP1174-20130828|22005_1  72 LALHGELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSL-SLVVQLA 120
                  568***********************************9765.4555555 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.1e-05    0.0046     322     384 ..      77     139 ..      52     175 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
    TIGR04095 322 eeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRks 384
                  e +++ R+++l  f  g+  +lva      G+Dv ++   + La +++P     R GR  R  
  MMETSP1174-20130828|22005_1  77 ELEQTARDKVLACFRGGSCRVLVATSVASRGLDVDSLSLVVQLAPAQDPATHTHRTGRTARAG 139
                  556789****************************************************99963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 650.29
//
Query:       MMETSP1174-20130828|22012_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 703.94
//
Query:       MMETSP1174-20130828|22010_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 763.06
//
Query:       MMETSP1174-20130828|22011_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.67
# Mc/sec: 929.83
//
Query:       MMETSP1174-20130828|22015_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 757.00
//
Query:       MMETSP1174-20130828|22013_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1024.24
//
Query:       MMETSP1174-20130828|22021_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   11.2   8.5      0.017   13.0   1.6    2.6  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.16   6.5e+02      15      23 ..      20      28 ..      12      37 .. 0.56
   2 ?    1.0   0.1     0.021        87       3      26 ..      31      53 ..      29      61 .. 0.74
   3 ?   13.0   1.6     4e-06     0.017       9      48 ..      96     135 ..      88     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.16
    TIGR01149 15 nevkkrLDe 23
                 ++ ++rLD+
  MMETSP1174-20130828|22021_1 20 EQFEQRLDQ 28
                 344555555 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.021
    TIGR01149  3 kvPkvlvepdefnevkkrLDeiee 26
                 k  k++ e+ ++++++++  eie+
  MMETSP1174-20130828|22021_1 31 KELKAVFEAHDYEAAHRK-KEIEH 53
                 55688999****999876.56765 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 4e-06
    TIGR01149   9 vepdefnevkkrLDeieekvefvngEvaqriGkkvGRDiG 48 
                  ++ def e  +  D iee ve+  gE    iG  vG +iG
  MMETSP1174-20130828|22021_1  96 ISLDEFGEDVRNDDGIEEDVENKIGEDNDTIGEGVGNEIG 135
                  6778999999999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 475.77
//
Query:       MMETSP1174-20130828|22024_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-27   94.2   2.2    1.4e-27   94.0   1.6    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    2.3e-18   64.2   4.3    2.3e-18   64.2   3.0    1.0  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.1e-17   61.5   2.0    1.2e-17   61.4   1.4    1.0  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    4.4e-16   55.6   1.8    4.8e-16   55.5   1.2    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    1.3e-15   54.4   1.8    1.4e-15   54.2   1.2    1.0  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    1.4e-15   55.0   3.0    1.4e-15   55.0   2.1    1.0  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    2.2e-15   53.6   0.7    2.4e-15   53.5   0.5    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.2e-15   53.1   1.1    2.5e-15   52.9   0.7    1.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    7.8e-15   51.6   0.4    8.4e-15   51.5   0.3    1.0  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.6e-14   51.3   3.3    1.8e-14   51.2   2.3    1.0  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    3.5e-14   49.7   1.2    3.7e-14   49.7   0.8    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.1e-11   40.3   1.1    2.2e-11   40.2   0.7    1.0  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    1.6e-10   37.0   0.2    1.6e-10   37.0   0.2    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.6e-06   25.9   0.5    1.6e-06   25.9   0.4    1.1  1  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    1.3e-05   22.8   1.3    1.6e-05   22.4   0.9    1.1  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
    0.00022   18.7   0.4    0.00023   18.6   0.3    1.2  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
     0.0012   16.3   0.5     0.0012   16.3   0.3    1.1  1  TIGR00338 serB: phosphoserine phosphatase SerB
     0.0022   13.6   1.9     0.0024   13.4   1.3    1.0  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
  ------ inclusion threshold ------
      0.021   12.6   0.3      0.043   11.6   0.1    1.5  2  TIGR01670 YrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
      0.029   11.7   0.0      0.031   11.6   0.0    1.1  1  TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein


Domain annotation for each model (and alignments):
>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   1.6   6.9e-30   1.4e-27     506     575 ..       7      76 .]       2      76 .] 0.97

  Alignments for each domain:
  == domain 1    score: 94.0 bits;  conditional E-value: 6.9e-30
    TIGR01647 506 eelvekadGFAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivlt 575
                  + l+ +a+GFA+v Pe k e++ + q+ g +vgmtGDGvnDa aL +A+vGiAva+ tDAA+ aaDi+lt
  MMETSP1174-20130828|22024_1   7 DRLIMEANGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIILT 76 
                  57899***************************************************************98 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   3.0   1.1e-20   2.3e-18     422     492 ..       7      76 .]       1      76 [] 0.87

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 1.1e-20
    TIGR01525 422 kelgiidevvaellPedKlakvkklqeeegk.kvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvll 492
                  ++l +  + +a+++PedK +++   q  + + +v m GDG+NDA+AL +A+vGia+++++d a++aAD++l+
  MMETSP1174-20130828|22024_1   7 DRLIMEANGFAQVMPEDKQEVILVEQ--NFGlVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIILT 76 
                  5555556779************9999..45559*************************************96 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   1.4   5.8e-20   1.2e-17     364     421 ..      14      76 .]       8      76 .] 0.89

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 5.8e-20
    TIGR01494 364 glfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais.....Akaaadivll 421
                  + fa+v Pe+K+e++   ++ g vv m+GDGvNDa+AL +A VGia++     Ak+aadi+l+
  MMETSP1174-20130828|22024_1  14 NGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVAnstdaAKNAADIILT 76 
                  449********************************************5444549999999986 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   1.2   2.3e-18   4.8e-16     560     629 ..       8      76 .]       2      76 .] 0.93

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.3e-18
    TIGR01522 560 evvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmilt 629
                   ++ +++ fa+  pe+k +++   q+ G vv mtGdGvnda+al  a++G+a+ +  td ak+aad+ilt
  MMETSP1174-20130828|22024_1   8 RLIMEANGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVAN-STDAAKNAADIILT 76 
                  56788999********************************************975.7***********97 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   1.2     7e-18   1.4e-15     489     547 ..      16      74 ..       3      75 .. 0.94

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 7e-18
    TIGR01497 489 iaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamnsGtqaakeaanmv 547
                  +a++ pedk evi  eq+ G +v mtGdG nda al qa+vg+a+   t+aak+aa+++
  MMETSP1174-20130828|22024_1  16 FAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADII 74 
                  58899***************************************************875 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   2.1     7e-18   1.4e-15     409     469 ..      14      76 .]       2      76 .] 0.87

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 7e-18
    TIGR01511 409 evlaevlPedKaakv..kelqekkvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvll 469
                  + +a+v+PedK +++  ++    +v m GDG+NDa aL +a+vgia++++td a++aad++l+
  MMETSP1174-20130828|22024_1  14 NGFAQVMPEDKQEVIlvEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIILT 76 
                  4589*********8722555568999***********************************85 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.5   1.2e-17   2.4e-15     523     583 ..      14      75 ..       7      76 .] 0.91

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 1.2e-17
    TIGR01116 523 lvfsrvePshklklv.elkeldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvl 583
                    f++v P++k++++  +++++ +v mtGdGvnda al +a++Gia+   t+ ak+a+d++l
  MMETSP1174-20130828|22024_1  14 NGFAQVMPEDKQEVIlVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIIL 75 
                  569999***999987256889****************************************9 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.7   1.2e-17   2.5e-15     774     830 ..       7      63 ..       2      72 .. 0.91

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.2e-17
    TIGR01657 774 kklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLsea 830
                  ++l+++ + fA v Pe+K+e++   ++++ +v+m GDG ND +AL qA+vGi+ +++
  MMETSP1174-20130828|22024_1   7 DRLIMEANGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANS 63 
                  689**************************************************9986 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.3   4.1e-17   8.4e-15     578     642 ..      11      75 ..       3      76 .] 0.93

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 4.1e-17
    TIGR01524 578 ekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvdsaadiakeasdiil 642
                     + fa++ p +k+ ++ + ++ G +vG+ GdG+nda al +a+vGi+v  ++d ak+a+diil
  MMETSP1174-20130828|22024_1  11 MEANGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIIL 75 
                  55667***********************************************************8 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   2.3   8.7e-17   1.8e-14     368     425 ..      16      76 .]       7      76 .] 0.87

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 8.7e-17
    TIGR01512 368 haellPedKveivkelke....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvll 425
                   a+++PedK e++  +++    v m GDG+NDa aL +A+vgia++ + +d+a ++AD++l+
  MMETSP1174-20130828|22024_1  16 FAQVMPEDKQEVILVEQNfglvVGMTGDGVNDAAALNQAQVGIAVA-NSTDAAKNAADIILT 76 
                  699********998777633335688********************.88***********95 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.8   1.8e-16   3.7e-14     606     668 ..      14      76 .]       3      76 .] 0.88

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.8e-16
    TIGR01517 606 rvlaRssPlDkqlLvelkk.lgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiill 668
                  + +a+  P+Dkq ++ +++  g vv +tGDG nDa aL++a+vG+a+  + t+ ak+a+Diil+
  MMETSP1174-20130828|22024_1  14 NGFAQVMPEDKQEVILVEQnFGLVVGMTGDGVNDAAALNQAQVGIAVANS-TDAAKNAADIILT 76 
                  5578999*****99999752799*************************99.***********95 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.7   1.1e-13   2.2e-11     664     724 ..      16      75 ..       5      76 .] 0.86

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.1e-13
    TIGR01106 664 fartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmil 724
                  fa+  p++k  ++   q  g +v +tgdgvnd+ al +a++g+a+    +d++k+aad+il
  MMETSP1174-20130828|22024_1  16 FAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVA-NSTDAAKNAADIIL 75 
                  888888766555555599**************************97.568*********98 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.2   7.9e-13   1.6e-10     673     733 ..      17      76 .]       5      76 .] 0.85

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 7.9e-13
    TIGR01523 673 arcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivls 733
                  a+  p+ k  +i         v mtgdgvnd+ +l qa+vgia+  n +d ak+a+di+l+
  MMETSP1174-20130828|22024_1  17 AQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVA-NSTDAAKNAADIILT 76 
                  5666777777777777777789*********************95.99***********97 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.4   7.9e-09   1.6e-06     158     202 ..      33      74 ..       4      76 .] 0.82

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 7.9e-09
    TIGR01487 158 llGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlv 202
                   +Gl    v + GD+ nD ++ ++a+ ++avan +d  K++aD++
  MMETSP1174-20130828|22024_1  33 NFGLV---VGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADII 74 
                  55554...3678*******************************98 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.9     8e-08   1.6e-05     209     243 ..      40      74 ..      37      76 .] 0.93

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 8e-08
    TIGR00099 209 aiGDseNDieMleaagvgvamgnaneelkaladyv 243
                  + GD+ ND++ l  a+vg+a+ n+++ +k++ad +
  MMETSP1174-20130828|22024_1  40 MTGDGVNDAAALNQAQVGIAVANSTDAAKNAADII 74 
                  57******************************986 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   1.1e-06   0.00023     170     203 ..      40      73 ..      11      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-06
    TIGR01482 170 viGDSeNDidlFevavfkvavanAqeelkewadl 203
                  + GD+ ND+++ + a++++avan ++  k++ad+
  MMETSP1174-20130828|22024_1  40 MTGDGVNDAAALNQAQVGIAVANSTDAAKNAADI 73 
                  469*****************************97 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   5.9e-06    0.0012     173     206 ..      40      74 ..       7      76 .] 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.9e-06
    TIGR00338 173 avGDGanDlsmikaAglgiaf.nakpvlkekadiv 206
                  + GDG nD +++++A++gia  n+  + k++adi 
  MMETSP1174-20130828|22024_1  40 MTGDGVNDAAALNQAQVGIAVaNSTDAAKNAADII 74 
                  78******************734556667777665 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.3   1.2e-05    0.0024     752     808 ..      19      73 ..      15      76 .] 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
    TIGR01652 752 vsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDf 808
                  v P  K +v+ lv ++   v+   gdG ND + + +A+vG+ ++     +A +a+D+
  MMETSP1174-20130828|22024_1  19 VMPEDKQEVI-LVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVAN-STDAAKNAADI 73 
                  8899999987.78888899**********************9974.45778888886 PP

>> TIGR01670  YrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.4   2.9e+02     102     125 ..       5      28 ..       3      37 .. 0.67
   2 ?   11.6   0.1   0.00021     0.043      95     132 ..      38      75 ..      20      76 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 1.4
    TIGR01670 102 lvdkevlekvGlsvavkdaheelr 125
                  + d  ++e  G++  + + ++e++
  MMETSP1174-20130828|22024_1   5 VRDRLIMEANGFAQVMPEDKQEVI 28 
                  567888888888755555455544 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00021
    TIGR01670  95 vafiGddlvdkevlekvGlsvavkdaheelrkvadyvt 132
                  v++ Gd ++d + l++  + +av+++ +  ++ ad+++
  MMETSP1174-20130828|22024_1  38 VGMTGDGVNDAAALNQAQVGIAVANSTDAAKNAADIIL 75 
                  7899*************************999999997 PP

>> TIGR02137  HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015     0.031     123     170 ..      14      61 ..       5      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00015
    TIGR02137 123 kgyqlrqkdqkrkvvkalkelyykviaagdsyndttmlkeadkgilfh 170
                   g+   + ++k++v+   +++   v  +gd  nd++ l++a+ gi   
  MMETSP1174-20130828|22024_1  14 NGFAQVMPEDKQEVILVEQNFGLVVGMTGDGVNDAAALNQAQVGIAVA 61 
                  577778889999999999999999999*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 200.62
//
Query:       MMETSP1174-20130828|22026_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.50
# Mc/sec: 641.47
//
Query:       MMETSP1174-20130828|22027_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 478.46
//
Query:       MMETSP1174-20130828|22032_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 475.96
//
Query:       MMETSP1174-20130828|22034_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1221.96
//
Query:       MMETSP1174-20130828|22037_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|22040_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|22044_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1174-20130828|22046_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    5.9  10.8       0.65    7.8   1.4    3.2  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.011        47      11      18 ..      14      21 ..       7      24 .. 0.69
   2 ?    7.8   1.4   0.00016      0.65       5      26 ..      36      56 ..      32      57 .. 0.84
   3 ?    0.5   0.1     0.033   1.4e+02       5      23 ..      62      80 ..      58      84 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.011
    TIGR01376 11 sakgsGGA 18
                  ak++GG+
  MMETSP1174-20130828|22046_1 14 EAKKNGGG 21
                 68898875 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00016
    TIGR01376  5 ilFsnNsakgsGGAIyatgkis 26
                 ++F++ s+ ++GG+ y+  ++s
  MMETSP1174-20130828|22046_1 36 VSFTSCSSYTNGGGFYTR-YAS 56
                 899999**********97.665 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.033
    TIGR01376  5 ilFsnNsakgsGGAIyatg 23
                  +F+   a + GG+ y+ g
  MMETSP1174-20130828|22046_1 62 CSFIDCVADEEGGGMYSPG 80
                 5666656777899988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 509.10
//
Query:       MMETSP1174-20130828|22038_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1242.52
//
Query:       MMETSP1174-20130828|22042_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   10.5   0.0      0.038    9.9   0.0    1.1  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.2e-06     0.038     108     144 ..     480     516 ..     466     518 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.2e-06
    TIGR01217 108 eekesakvtfeelrrqvaslaaalralGvkkGdrvag 144
                  +++ +++vt+  lr+  a la ++ra+ v+ G  v g
  MMETSP1174-20130828|22042_1 480 HKDRPTNVTWPFLRQTNAALAGEMRAMAVRYGYAVEG 516
                  4567899************************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.51
# Mc/sec: 1345.77
//
Query:       MMETSP1174-20130828|22051_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1174-20130828|22053_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|22052_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|22049_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-46  157.0   0.1    1.5e-46  156.4   0.1    1.2  1  TIGR03465 HpnD: squalene synthase HpnD
    8.2e-27   92.2   0.0    1.2e-26   91.7   0.0    1.1  1  TIGR03464 HpnC: squalene synthase HpnC
    3.1e-06   24.4   0.0    8.2e-06   23.0   0.0    1.6  1  TIGR01559 squal_synth: farnesyl-diphosphate farnesyltransferase


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.1   1.1e-49   1.5e-46       6     259 ..      75     354 ..      70     364 .. 0.84

  Alignments for each domain:
  == domain 1    score: 156.4 bits;  conditional E-value: 1.1e-49
    TIGR03465   6 gssfyyamrlLpeekrealtalyAfcrevddivde..eldpevkqakLdwwraeidrly.....aGapehpvakaLadaarrfklpqedllevidGmemDle.........qe.ryedfaeLklYcdrvAgavGrlsarifGasdeet....relAehlGlAlqltnilrdvgeDae.rgRiYLPaeeLqrfgvaaadileara.....spalaallaeqaeraralyaealallpaadrraqraalimaaiyralldeie.adgfqvlrqrvkltklrklw 259
                  ++ fy a +++++ k ea+ a+y +cre d+++d+   + +e+++++L+  r+++++ +     +Ga++  v  aLa++ rrf+l+   ++++idGm mDl+          +  +++++e +lY +rvAg+vG +++ i+G+  + +    r+ A +lG A+qltnilrdvgeD + r+R+Y+P ++L++fgva +dil+ +      s+a ++l+a++ er  a y+ a + +p+++  +q ++++  ++yr++   ++ ++g+++l+qr  + k+ k+ 
  MMETSP1174-20130828|22049_1  75 SRTFYLATQFMDRRKAEAVWAIYTWCRETDEVADGeeGGTDEERATELEFRRQRLQKTMvetstDGASSADV--ALAASCRRFQLEVSPFEDMIDGMLMDLDlgdqsgpssVRvMCDSIDEQDLYAYRVAGTVGLMTLPIVGEGVDTAskliRQRAVALGEAFQLTNILRDVGEDIQlRNRVYIPGSQLTQFGVAPEDILKMSTgevpiSDAYRRLIASELERNLARYEVAEQGIPMLPWITQFPVRVALELYREIAMSVRsRNGYDNLTQRAFVGKWSKIG 354
                  578*******************************8324678999*******999987642111167776555..**************************9643333332223468899**********************7765544112267799******************9758***************98888765432222289**********************************************99983579************99976 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0   8.6e-30   1.2e-26       9     262 ..      78     356 ..      72     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 91.7 bits;  conditional E-value: 8.6e-30
    TIGR03464   9 FpVaslllpkrlrapvaalYafaRtaDDlaDegs.asaeerlalLdalraeLdavaegepa...aplleaLaetvrerslpiepfldLleAfrqDvsvkr..........yatfeelldYCrrSAnPvGrlvLdlaga..sdeerl..alsdaiCtalQlinflqDvseDlrk.dRvYlpaddlerfgvseedl.....aaaqataavrellafeverarallk...egapLvaev.dgrlglelalivrggerilekieaagydvlrerpklkkadllvll 262
                  F  a+ ++++r  + v a+Y ++R  D++aD ++ +++eer  +L+  r++L++++ ++++    +  +aLa++ r+++l+++pf+d+++ + +D +             +++ +e   Y  r A  vG + L ++g+  +++++l  +++ a+  a Ql+n l+Dv+eD++  +RvY+p ++l +fgv+ ed+      +   + a r+l+a+e+er+ a+++   +g p+   + +  +++ l+l  ++++++ +   + gyd l +r  ++k+ ++ ll
  MMETSP1174-20130828|22049_1  78 FYLATQFMDRRKAEAVWAIYTWCRETDEVADGEEgGTDEERATELEFRRQRLQKTMVETSTdgaSSADVALAASCRRFQLEVSPFEDMIDGMLMDLDLGDqsgpssvrvmCDSIDEQDLYAYRVAGTVGLMTLPIVGEgvDTASKLirQRAVALGEAFQLTNILRDVGEDIQLrNRVYIPGSQLTQFGVAPEDIlkmstGEVPISDAYRRLIASELERNLARYEvaeQGIPMLPWItQFPVRVALELYREIAMSVRS---RNGYDNLTQRAFVGKWSKIGLL 356
                  88999**************************8762578999***********998877333344788899************************9987666677777788999999999999*************987223444442245677889***************988********************5543333445779***********988776111555666666555666666666666665543...579************9998775 PP

>> TIGR01559  squal_synth: farnesyl-diphosphate farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     6e-09   8.2e-06       6     201 ..      67     259 ..      62     279 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6e-09
    TIGR01559   6 cyellnlvsrsfavvikeleaelrdavvifylvlraldtveddmtisadkkipllrdfhkk.lkdedwkftesd.kekdralleefekvlaeflklkekyqeviaditkrmGnGmadfvlkeekneetvedydkychyvaGlvGlGlsrlfvaakledeslaeseelsnslGlflqktniirdyledlde.nrefWPre 201
                  c e  ++ sr+f +  + ++    +av   y   r  d v d  +  +d+      +f ++ l+++  + ++++ +  d al     +   e   +++    ++ d+      G  +  ++     +++++ d+y + vaG vG  l  l ++ +  d+  +  ++++  lG  +q tni+rd  ed++  nr + P  
  MMETSP1174-20130828|22049_1  67 CREATEIGSRTFYLATQFMDRRKAEAVWAIYTWCRETDEVADGEEGGTDEERATELEFRRQrLQKTMVETSTDGaSSADVALAASCRRFQLEVSPFEDMIDGMLMDLD----LGDQSGPSSVRVMCDSIDEQDLYAYRVAGTVG--LMTLPIVGEGVDTASKLIRQRAVALGEAFQLTNILRDVGEDIQLrNRVYIPGS 259
                  666666677777777777777777777777777777777777666666665555555554413333333333223555555555555555555544444444444432....22222222222223789************997..667777776666666778899999******************97699998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1252.20
//
Query:       MMETSP1174-20130828|22062_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 615.95
//
Query:       MMETSP1174-20130828|22064_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 1730.52
//
Query:       MMETSP1174-20130828|22068_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-10   36.9   0.0    2.6e-10   36.9   0.0    1.0  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
    1.2e-07   27.7   0.1    1.2e-07   27.7   0.1    1.2  1  TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
    2.4e-07   27.5   0.1    2.4e-07   27.5   0.1    1.1  1  TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.9e-13   2.6e-10     260     336 ..      45     119 .]       3     119 .] 0.76

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 1.9e-13
    TIGR02390 260 iedlWellqyhvatyfdnelpgipkarhrsgrplktlaqrlkGkeGrlrsnlsGkrvnfsartvispdPrisinevG 336
                  +  lW  lq +v+ y+d       ++  +++    ++ q l  k+G +r n+ Gkrvn+++r+vispd ++   e+G
  MMETSP1174-20130828|22068_1  45 LISLWLELQSQVNGYMDAAK--YAQTGGKANEMAYGIRQLLERKQGLFRMNMMGKRVNHACRSVISPDLNMKGSEIG 119
                  3369************9754..5566677788889**********************************99988887 PP

>> TIGR02386  rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   8.8e-11   1.2e-07     281     346 ..      52     114 ..       5     119 .] 0.85

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 8.8e-11
    TIGR02386 281 lqeavdalfdngrrkkpvkgknkrplkslsdmlkGkqGrfrqnllGkrvdysgrsvivvGPelkly 346
                  lq  v+  +d  +  +   gk +     + + l  kqG+fr n++Gkrv+++ rsvi   P+l+++
  MMETSP1174-20130828|22068_1  52 LQSQVNGYMDAAKYAQ-TGGKANEMAYGIRQLLERKQGLFRMNMMGKRVNHACRSVI--SPDLNMK 114
                  7888888888776555.5677788888999*************************97..6888775 PP

>> TIGR02387  rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   1.7e-10   2.4e-07     300     364 ..      52     113 ..       3     119 .] 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.7e-10
    TIGR02387 300 lqeavdalidngrrgrtvvgannralkslsdiiegkqgrfrqnllgkrvdysgrsvivvgpklkl 364
                  lq  v+  +d  +  +t   an+ a   + +++e kqg fr n++gkrv+++ rsvi   p+l++
  MMETSP1174-20130828|22068_1  52 LQSQVNGYMDAAKYAQTGGKANEMA-YGIRQLLERKQGLFRMNMMGKRVNHACRSVIS--PDLNM 113
                  89999999****9999987776665.6899*************************985..55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 581.73
//
Query:       MMETSP1174-20130828|22067_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1216.77
//
Query:       MMETSP1174-20130828|22072_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|22073_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|22071_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1682.86
//
Query:       MMETSP1174-20130828|22076_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   13.3   0.0     0.0083   13.3   0.0    1.0  1  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     2e-06    0.0083     204     230 ..      16      42 ..       8      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-06
    TIGR01762 204 deasavplemkaGqfiiftsrlmhasl 230
                  + a+av++e++aG+f+++ s+ +h++ 
  MMETSP1174-20130828|22076_1  16 NSAQAVQVELQAGDFLLWDSQAIHCAR 42 
                  679*********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|22077_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|22075_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 567.95
//
Query:       MMETSP1174-20130828|22074_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 938.59
//
Query:       MMETSP1174-20130828|22078_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 957.99
//
Query:       MMETSP1174-20130828|22087_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|22089_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 743.05
//
Query:       MMETSP1174-20130828|22092_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 517.80
//
Query:       MMETSP1174-20130828|22090_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.4   0.2      0.024   11.0   0.1    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.8e-06     0.024     135     173 ..     109     147 ..     101     151 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.8e-06
    TIGR03103 135 eivGtvmgvdhekafddpekGsslWalavdpqaakpGvG 173
                  ++vG    +d   a +d ++Gssl+a+ v+p+a+ + +G
  MMETSP1174-20130828|22090_1 109 DVVGCCEDMDGASAGGDVSRGSSLFAVVVNPTATAACLG 147
                  699******************************998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1029.51
//
Query:       MMETSP1174-20130828|22096_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 537.38
//
Query:       MMETSP1174-20130828|22098_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 210.20
//
Query:       MMETSP1174-20130828|22099_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 344.11
//
Query:       MMETSP1174-20130828|22095_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-67  224.4   0.0    1.2e-34  117.7   0.0    3.0  3  TIGR00588 ogg: 8-oxoguanine DNA-glycosylase (ogg)
     0.0018   15.8   0.0     0.0042   14.6   0.0    1.6  2  TIGR01083 nth: endonuclease III
     0.0023   15.4   0.0      0.016   12.6   0.0    2.0  1  TIGR01084 mutY: A/G-specific adenine glycosylase


Domain annotation for each model (and alignments):
>> TIGR00588  ogg: 8-oxoguanine DNA-glycosylase (ogg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0059         8       4      30 ..      16      42 ..      13      48 .. 0.91
   2 !   99.6   0.0   2.7e-32   3.7e-29      39     156 ..      79     196 ..      67     205 .. 0.85
   3 !  117.7   0.0   8.6e-38   1.2e-34     159     306 ..     224     370 ..     212     374 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0059
    TIGR00588  4 rfaslaiprselrLdlvlrsGqsfrwr 30
                 ++ +l+ p  elr+   l++Gq f wr
  MMETSP1174-20130828|22095_1 16 QWYDLSTPPEELRVTASLATGQCFNWR 42
                 6899999*******************8 PP

  == domain 2    score: 99.6 bits;  conditional E-value: 2.7e-32
    TIGR00588  39 sellvladqevvvltqteeellevvargDks...tqdeLktklekyfqLdvsleqlyshwasvDkafqkvaqkfqGvrllrqdPieclisficssnnniaritrmverlcqafGprlitld 156
                   +  v++d+ vv l++t   ++       ++   ++ eL+++le +fqL+v l+ ly+ w+  D  +++va+   G+r+lrqdP+ecl++ficssnnni rit m++r++ a+G++l+ + 
  MMETSP1174-20130828|22095_1  79 VG--VVGDR-VVALRETGGSVHFACLNNKNAkkdQETELRSELEDMFQLEVPLKGLYHSWSRADDRLARVAEAIPGLRVLRQDPVECLFAFICSSNNNIPRITLMMNRIRAAYGTHLMDIA 196
                  34..77777.8888888887775444333333336679****************************************************************************9998775 PP

  == domain 3    score: 117.7 bits;  conditional E-value: 8.6e-38
    TIGR00588 159 tyhgfPsleaLagreaeakLrklGlGyraryvretaralleekgeaaylqqlkeas.y..edareaLlelsGvGpkvaDCicLmaldkdeavPvDvhvrriakrdysirpkesrakgavplarkelgnlfrklwGeyagwaqavLfskelr 306
                   +++fP  e++a r+ e++ r+lGlGyrar+vre+a  ll   g + +l  l++ + y  e + e L +++GvG+kvaDC+ L++ld+++ +PvD hv++ia rdy+    e ++ ++  +  + +g+lfr  +G+ agwa + Lf +el 
  MMETSP1174-20130828|22095_1 224 RFYSFPDVEVMA-RAREEEYRHLGLGYRARFVRESAGSLLSLGG-RPWLVGLRDRDaYsrEAVLEELKKFTGVGSKVADCVALFSLDQSDLIPVDTHVWQIACRDYDSTLSEVKSLTPK-IYDR-IGDLFRTRFGDKAGWAHSLLFAAELA 370
                  489*****9997.667889*********************8655.55**999554324337899**************************************************99554.4444.8*********************9986 PP

>> TIGR01083  nth: endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-06    0.0042     106     149 ..     285     329 ..     282     354 .. 0.80
   2 ?   -3.6   0.0       1.2   1.6e+03      97     124 ..     371     398 ..     368     401 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-06
    TIGR01083 106 leelvkLpGvgrKtAnvvlsvafgip.aiavDtHvkRvskRlgls 149
                  leel k  Gvg K A  v   + +    i vDtHv  ++ R   s
  MMETSP1174-20130828|22095_1 285 LEELKKFTGVGSKVADCVALFSLDQSdLIPVDTHVWQIACRDYDS 329
                  689*************99888887764899*******99886555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
    TIGR01083  97 kykgevPedleelvkLpGvgrKtAnvvl 124
                   +k+++Ped+ e + +  +  K A + l
  MMETSP1174-20130828|22095_1 371 AFKSQLPEDMREEMDVFRAQEKAAKLAL 398
                  6888999999887777777777776665 PP

>> TIGR01084  mutY: A/G-specific adenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.2e-05     0.016      55     148 ..     226     328 ..     213     353 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
    TIGR01084  55 ekfPtveaLanaeedevlklWeGlGYYaRaRnLkkaakevkeefg............gelPkdledlkalkGvGrytagailslalnkkvpi.vDGnvkRvlsRlfa 148
                    fP ve +a a+e+e  +l  GlGY  RaR ++++a ++ +  g             +    le+lk+++GvG+  a  ++ ++l++   i vD  v ++ +R + 
  MMETSP1174-20130828|22095_1 226 YSFPDVEVMARAREEEYRHL--GLGY--RARFVRESAGSLLSLGGrpwlvglrdrdaYSREAVLEELKKFTGVGSKVADCVALFSLDQSDLIpVDTHVWQIACRDYD 328
                  369*************9997..9**9..66666776666655544211111111100222344689999******************99877689999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.41
# Mc/sec: 1374.62
//
Query:       MMETSP1174-20130828|22100_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   14.6   0.0     0.0091   13.8   0.0    1.3  1  TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG


Domain annotation for each model (and alignments):
>> TIGR03293  PhnG_redo: phosphonate C-P lyase system protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-06    0.0091      93     141 ..      51      99 ..      44     102 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-06
    TIGR03293  93 llDAllqaperheellaalieplearlaerraarsaeiaaTrVeFftlv 141
                  l+DAl    ++h++ +++ ie l+a ++ r+++ ++e a+ rV   t+ 
  MMETSP1174-20130828|22100_1  51 LADALTSYLASHDSTIEDDIELLAAAQEARNDNPESEEATGRVYLITMR 99 
                  78*********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 655.95
//
Query:       MMETSP1174-20130828|22105_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|22106_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|22107_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|22102_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1131.91
//
Query:       MMETSP1174-20130828|22101_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1909.01
//
Query:       MMETSP1174-20130828|22112_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.2   0.0     0.0011   16.1   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.7e-07    0.0011      19      70 ..       9      57 ..       1      63 [. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-07
    TIGR00601 19 pdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfv 70
                 ++ t+  +K+ +e+++    ++v+ q ++yaGk L Dd +++ y+i  +  +
  MMETSP1174-20130828|22112_1  9 TSWTIGSVKHIVEEKEK---IDVQCQHMVYAGKPLLDDLAIAVYNIPHQSTI 57
                 56688888888877666...99************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|22113_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 532.36
//
Query:       MMETSP1174-20130828|22117_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 332.25
//
Query:       MMETSP1174-20130828|22119_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1511.05
//
Query:       MMETSP1174-20130828|22126_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|22127_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036    9.6   3.5      0.038    9.5   2.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.18    9.6   5.5        0.2    9.4   3.8    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.4   1.9e-05     0.038     390     953 ..      79     167 ..       5     188 .. 0.35

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.9e-05
    TIGR02168 390 eleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyel 953
                  +++ ++++l+a +e+l+                                                                                                                                                                                                                                                                                                                                                                                                                                   ++les+ +e ++   e ++l+e +e+   +++ l+a++ ++ee  + le+++  l+ + + ++ ++ae+r                                                         l
  MMETSP1174-20130828|22127_1  79 NMSTSESALKAIVEQLN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STLESYAAERKRGDYETQDLDEDKENPPLDLSGLKAALMDAEEYVAGLESQMVVLKGRSTDVKWQVAEAR--------------------------------------------------------AL 167
                  11111111122222222...................................................................................................................................................................................................................................................................................................................................................................................................................................2222222222222222222222222222222222222222222222222222222222222222222222........................................................22 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.8   9.7e-05       0.2      49     134 ..      14     106 ..      10     177 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.7e-05
    TIGR03499  49 aaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae..eelrkelkalkellekqlselal.....e 134
                  aai+ ++ a+  s+++ + +++++++ +++++++++   +++++++ ++a+ ++++k e+ +   +++   +alk+++e+++s+l++     +
  MMETSP1174-20130828|22127_1  14 AAINRSKGAEIGSTKQVTPAQQQAKPITPAQRQDKPITPAQRQAKPITPAQPATSNKSEQLAwsSNMSTSESALKAIVEQLNSTLESyaaerK 106
                  566666767777888888888888888888888888888888887777666666666665557788888888888888888888876643321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|22130_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|22129_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 901.93
//
Query:       MMETSP1174-20130828|22128_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1441.98
//
Query:       MMETSP1174-20130828|22131_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1669.66
//
Query:       MMETSP1174-20130828|22134_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1174-20130828|22132_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1167.90
//
Query:       MMETSP1174-20130828|22139_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|22136_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-07   25.1   0.0      1e-06   24.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00024   18.4   0.2    0.00064   17.1   0.0    1.7  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.1e-10     1e-06      78     181 ..     236     336 ..     214     344 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.1e-10
    TIGR03903  78 aaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves....hakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeq.LRgepvtaksDlYaWGLivle 181
                   ++t ++++ ++ a+ + h+ G  hRD+k +ni+v aa  +s      +++DFGi+  l + e+          ++ G+  + aPe  LR+     k D+++   +vle
  MMETSP1174-20130828|22136_1 236 DQNTMKIITSIIAAVQHIHALGYAHRDIKSENILVRAASADSsvitDVRLIDFGIACRLDDREA--------CCDLCGTRGFIAPESiLREVRDLRKVDVWSLACVVLE 336
                  47899******************************876555411115789******99998877........4566677777777752444445566666666666665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.3   6.1e+02     156     191 ..      61      96 ..      57      97 .. 0.75
   2 !   17.1   0.0   3.1e-07   0.00064      90     143 ..     237     298 ..     220     304 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.3
    TIGR03724 156 lestheelaeelieaflegYkeeveeekavlekvke 191
                  + ++ +  + e+ +++ e+Y+++++e ++v +++++
  MMETSP1174-20130828|22136_1  61 MATARKRGSAEIHNQLFEKYTKNRRELQSVSRHLSK 96 
                  555566667888999999999999988888887765 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.1e-07
    TIGR03724  90 ekelellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGLgkkskeve 143
                  ++++++++++  +v ++H  g +h D+  +Ni+v+         +++ liDfG++ + ++ e
  MMETSP1174-20130828|22136_1 237 QNTMKIITSIIAAVQHIHALGYAHRDIKSENILVRaasadssvITDVRLIDFGIACRLDDRE 298
                  3445999999999*********************867765554467889****998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1325.28
//
Query:       MMETSP1174-20130828|22140_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1426.13
//
Query:       MMETSP1174-20130828|22143_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 545.55
//
Query:       MMETSP1174-20130828|22144_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.5   3.4    4.1e-09   34.2   0.8    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.5e-08   30.8   1.2    1.8e-08   30.6   0.8    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00021   17.4   1.7    0.00024   17.2   1.2    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    0.00048   17.7   0.5     0.0007   17.2   0.3    1.2  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.019   11.4   0.1       0.02   11.3   0.1    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.8     5e-12   4.1e-09      44     111 ..      23      90 ..      16      98 .. 0.94
   2 !    3.9   0.0    0.0089       7.3      83     109 ..      97     123 ..      91     124 .] 0.91

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5e-12
    TIGR02521  44 qgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcq 111
                  ++dl++A    ++Al+l+p++ +     A +++qlg+l++Aee+ + A++ + +++ + NNY  FL++
  MMETSP1174-20130828|22144_1  23 RNDLATALSLFDEALTLAPNQVQNLTNSAQVLKQLGRLDEAEERLQCAVASQSKSAMATNNYANFLWR 90 
                  58999*************************************************************87 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0089
    TIGR02521  83 kAeesfrkAltlkpnngdvlNNYGtFL 109
                   A++ + ++l+ +pn+  ++ NY +FL
  MMETSP1174-20130828|22144_1  97 GAKALYLRGLEHNPNDRLLRRNYAVFL 123
                  68999*********************9 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.8   2.2e-11   1.8e-08     475     567 ..      20     113 ..      11     121 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 2.2e-11
    TIGR02917 475 ylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaark.gneeeavallekaaekdpkel 567
                  ++ ++dla A + f +AL ++p++++ l+n A++  q +++d+A +r++ ++a + k+  a +++a++  r   n++ a+al+ +  e +p++ 
  MMETSP1174-20130828|22144_1  20 AQVRNDLATALSLFDEALTLAPNQVQNLTNSAQVLKQLGRLDEAEERLQCAVASQSKSAMATNNYANFLWRVrSNPAGAKALYLRGLEHNPNDR 113
                  56789***************************************************************999889*********99999999875 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.2   2.9e-07   0.00024     102     194 ..      26     119 ..      19     124 .] 0.86

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.9e-07
    TIGR03939 102 wdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfp.sdaerlealaYvlraaedsldalaaiqqalrlePdnkellkel 194
                   ++Al+l+ ++l  +P++ + l+  a +l   g+ +eA ++l+ ++++++ s+ ++++  +++ r + ++++a a + + l+++P+++ l +++
  MMETSP1174-20130828|22144_1  26 LATALSLFDEALTLAPNQVQNLTNSAQVLKQLGRLDEAEERLQCAVASQSkSAMATNNYANFLWRVRSNPAGAKALYLRGLEHNPNDRLLRRNY 119
                  5799***************************************988777735567777789999***********************8555555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   8.5e-07    0.0007      63     120 ..      21      78 ..      15      86 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.5e-07
    TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  q  ++ ++A+  ++ a++l +++ + +  +a++l +lg+  eA++ L+ a++ + +++
  MMETSP1174-20130828|22144_1  21 QVRNDLATALSLFDEALTLAPNQVQNLTNSAQVLKQLGRLDEAEERLQCAVASQSKSA 78 
                  56678899*******************************************9887665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.5e-05      0.02     512     562 ..      14      64 ..      10     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.5e-05
    TIGR00990 512 nkalalfrtkedfieaekllekalildPesdiavitlaqlllqqekvdeal 562
                  n a  l ++++d + a  l + al l P+  +     aq+l q +++dea 
  MMETSP1174-20130828|22144_1  14 NYARFLAQVRNDLATALSLFDEALTLAPNQVQNLTNSAQVLKQLGRLDEAE 64 
                  6688899******************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|22146_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|22145_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   15.0   0.0     0.0023   15.0   0.0    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.6e-07    0.0023       9      80 ..       9      78 ..       2     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.6e-07
    TIGR00601  9 kqqkfkidlepdetvkelKekiesekgkdayevaqqkLiy..aGkiLsDdktvkeykikekdfvvvmvskkKav 80
                 ++q++ + +ep++  ++lK+k ++ ++   ++ +  +Li   + + L+D  +v++++i++ d v ++v kk + 
  MMETSP1174-20130828|22145_1  9 RNQTIFLHVEPQDNFMVLKQKCAEINN---VPPSSVLLIEgeTKRELADLASVSDSEIEN-DAVLFLVLKKESG 78
                 5789999***************98888...*********6224689************65.6677777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|22148_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.22s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 954.98
//
Query:       MMETSP1174-20130828|22147_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 886.21
//
Query:       MMETSP1174-20130828|22150_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 522.46
//
Query:       MMETSP1174-20130828|22152_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1174-20130828|22151_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 619.33
//
Query:       MMETSP1174-20130828|22149_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   15.0   0.1     0.0071   14.1   0.1    1.4  1  TIGR02899 spore_safA: spore coat assembly protein SafA


Domain annotation for each model (and alignments):
>> TIGR02899  spore_safA: spore coat assembly protein SafA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.7e-06    0.0071       1      29 [.      74     102 ..      74     115 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-06
    TIGR02899   1 vqkGDtlWkiAkkygvdldeLiqaNpQls 29 
                  vq+GDtl  iA ++ + ++ L++ N  + 
  MMETSP1174-20130828|22149_1  74 VQRGDTLQGIALRNHIKISDLKKWNKIVG 102
                  8***********************98774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 1513.27
//
Query:       MMETSP1174-20130828|22156_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-09   33.3   8.6    6.8e-06   23.6   0.5    3.3  3  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat
  ------ inclusion threshold ------
      0.015   12.9   1.1      0.015   12.9   0.8    2.2  2  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0045       9.2      12      20 ..       5      13 ..       4      20 .. 0.78
   2 !   23.6   0.5   3.3e-09   6.8e-06       3      22 ..      23      42 ..      21      49 .. 0.89
   3 !    9.9   0.2   6.9e-05      0.14       6      19 ..      52      66 ..      49      67 .] 0.89

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0045
    TIGR01376 12 akgsGGAIy 20
                 a+ +GG+I 
  MMETSP1174-20130828|22156_1  5 AGSNGGGIL 13
                 788*****6 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 3.3e-09
    TIGR01376  3 gtilFsnNsakgsGGAIyat 22
                 g+  F++Nsa++sGGA y++
  MMETSP1174-20130828|22156_1 23 GNCEFESNSATESGGAVYSS 42
                 6778**************97 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 6.9e-05
    TIGR01376  6 lFsnNsakg.sGGAI 19
                 lF +Nsa + +GGA 
  MMETSP1174-20130828|22156_1 52 LFLSNSADEeGGGAF 66
                 7********999985 PP

>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   7.1e-06     0.015      19      43 ..       7      31 ..       2      32 .. 0.88
   2 ?    3.7   1.0    0.0054        11       4      20 ..      39      56 ..      33      58 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.1e-06
    TIGR03804 19 nNsyGIyLydSsnNtlsnNtasnNg 43
                 +N++GI L d sn t+ n+++ +N+
  MMETSP1174-20130828|22156_1  7 SNGGGILLDDISNVTIGNCEFESNS 31
                 7888*****************9997 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0054
    TIGR03804  4 Lesssnnt.lenNtasnN 20
                 ++ss++n  ++n  + +N
  MMETSP1174-20130828|22156_1 39 VYSSHSNVsISNSLFLSN 56
                 456666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|22155_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.56
# Mc/sec: 618.26
//
Query:       MMETSP1174-20130828|22157_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   10.4   2.8       0.22   10.0   1.9    1.2  1  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.9   5.4e-05      0.22      38      77 ..       8      48 ..       4      54 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.4e-05
    TIGR01195 38 rkkvkeveakaakek.aaaaAvaa.vedeedelvaaiaAAvh 77
                 rk+ +e +  ++k k  a+ A +  +e++++  +aa aAA++
  MMETSP1174-20130828|22157_1  8 RKVNEESARFSQK-KiTAMFARVDkNEKQKETAAAAAAAALS 48
                 4434444444444.3589999999899999777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|22160_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1174-20130828|22163_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|22169_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1174-20130828|22172_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|22167_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 808.97
//
Query:       MMETSP1174-20130828|22166_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-129  431.9   2.5    1.1e-90  302.6   0.2    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    3.2e-79  264.6   0.1      8e-62  207.0   0.1    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.3e-55  186.8   0.1    1.3e-30  104.3   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    7.3e-54  181.0   0.4    2.7e-31  106.4   0.0    2.6  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.9e-53  179.8   0.7    7.7e-31  105.2   0.1    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.8e-52  175.3   0.3    9.5e-28   94.7   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.4e-51  173.4   0.2    1.3e-26   90.9   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.6e-48  161.3   0.7    3.9e-24   82.9   0.2    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.1e-47  159.5   4.6      2e-22   77.7   0.0    3.0  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.5e-47  158.4   0.1    3.9e-31  106.1   0.0    2.1  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.8e-46  155.5   0.5    1.3e-25   87.6   0.0    2.5  2  TIGR00958 3a01208: antigen peptide transporter 2
    4.2e-43  145.7   0.0    3.9e-23   79.7   0.0    2.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.9e-41  140.2   1.3    4.9e-20   69.5   0.1    2.3  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.7e-33  111.8   3.2    6.4e-17   59.1   0.5    2.6  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    9.4e-23   78.6   0.0    3.1e-14   50.8   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.3e-21   73.6   0.0    3.1e-10   37.7   0.0    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.1e-21   73.0   0.3    9.3e-12   42.7   0.1    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-19   68.6   0.1    8.2e-09   33.1   0.0    2.8  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.3e-19   68.6   0.3    2.5e-09   35.0   0.1    2.4  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.4e-19   67.6   0.4    5.2e-10   36.9   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    7.5e-19   65.9   0.0    7.7e-09   32.9   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
      1e-18   65.7   0.1    3.7e-09   34.4   0.0    2.4  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.5e-18   64.8   0.1    1.9e-10   38.4   0.0    2.4  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.8e-17   61.2   0.1    1.5e-08   31.9   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.3e-17   60.9   1.6    5.1e-09   33.6   0.1    2.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.9e-17   59.7   0.1    2.4e-08   31.6   0.0    2.2  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.1e-17   59.5   0.9    8.9e-09   33.0   0.0    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.5e-16   57.3   0.1      2e-07   28.6   0.0    2.2  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.8e-15   54.7   0.1    6.9e-10   36.4   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.5e-15   54.1   0.8    3.8e-07   27.2   0.1    2.2  2  TIGR01288 nodI: nodulation ABC transporter NodI
    5.2e-15   53.4   0.1    4.5e-09   33.8   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.8e-15   52.7   0.5    4.2e-07   27.4   0.2    2.3  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    8.1e-15   52.1   0.0    3.3e-09   33.6   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.1e-14   52.0   0.4    1.2e-08   32.2   0.0    2.2  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.3e-14   52.0   0.0    3.8e-08   30.9   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      2e-14   51.5   0.1    8.1e-07   26.6   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.3e-13   48.2   0.0    1.8e-06   25.6   0.0    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      5e-13   46.3   3.1    1.1e-08   31.9   1.7    2.6  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.3e-12   44.3   0.1    6.9e-07   26.9   0.0    2.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.9e-12   44.2   1.1    1.7e-07   29.0   0.1    2.6  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.3e-12   42.5   0.1    1.5e-07   28.7   0.0    2.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.4e-11   41.0   0.0      3e-05   21.6   0.0    2.3  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.9e-11   40.8   0.1    2.4e-07   28.4   0.0    2.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.9e-11   40.0   0.3    1.8e-06   25.3   0.0    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      6e-11   39.3   0.0    9.6e-11   38.6   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.3e-11   39.2   0.3    2.8e-06   23.9   0.0    2.3  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.7e-10   37.3   0.2    0.00017   18.1   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-09   36.0   0.6    0.00039   17.8   0.0    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.2e-09   36.0   0.1    3.6e-06   24.7   0.0    2.2  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    8.6e-09   33.1   0.5     0.0011   16.3   0.0    2.3  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.1e-07   25.4   0.0    0.00068   14.4   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    3.3e-07   28.0   1.2    0.00087   16.8   0.1    2.2  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    8.7e-07   26.4   0.1    0.00016   19.0   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
    1.7e-06   24.7   1.1     0.0011   15.4   0.0    2.6  2  TIGR00955 3a01204: pigment precursor permease
    2.4e-06   24.6   0.8    6.4e-06   23.2   0.0    1.9  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.019   10.4   0.0      0.019   10.4   0.0    1.7  2  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.6   0.2   1.5e-92   1.1e-90     937    1402 ..       6     472 ..       2     492 .. 0.89
   2 !  129.5   0.1   2.5e-40   1.8e-38    1409    1521 ..     508     620 ..     492     621 .. 0.95

  Alignments for each domain:
  == domain 1    score: 302.6 bits;  conditional E-value: 1.5e-92
    TIGR00957  937 wklmeadkaqigqvklsvywdyakaig..lfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgnciv..lfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkd 1402
                     l++++  q g     vy  y+ a g  l+it l++ l ++     l  ++ l++w dd  + g+   + +   + a+l  l  ia+    ++     i as +lh +l+  v+++p  +++rtp g+++nrfs +++++d      i  ++g +f    + ivi +  p +  i + + ++ f v ++y  s+r+lkrl+s ++spvy+hf+e++ g s +raf+  +r++ q    v++ + a      a+rw+  rl+++   +     a +f       l+a l gl + y+     y+   ++ ++ +e  + +ver+ ey +  +ea  ++ + +pps+wp  g++   + +l+y     +v++ ++ ++     vgivgrtgagks+++l+l+ri+e+ eg i+idg++i  +gl dlr +++++pqdpvlf+g++r+nldpf ++ d ++  al+   + +
  MMETSP1174-20130828|22166_1    6 NVLVKNEERQQGAPSWEVYAIYMSACGgkLVITGLAV-LAISTGLVGLLFKLQLTAWLDDMDTGGSPVSSYFWSYIGATLFFLAAIAL--RFFCQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINIPWLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWMGFRLNCLSAVVSgtTGAMIFFFGKEYGLTAALSGLILNYATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATVVPDHRPPSNWPAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDEWDDGQLRQALDRVQITE 472 
                   578999999*****************96566666665.56777777888999********8877777777666666666666665554..445556779**********************************************************988888888888886555555555778899********************************************999988877666666666789************99996213456677777789*******************************************************************************************************************************************************************************99998776655 PP

  == domain 2    score: 129.5 bits;  conditional E-value: 2.5e-40
    TIGR00957 1409 dkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysmakdag 1521
                   d l +e +egg nlsvg+rql+clarallr  ++lv+deata vd etd  iq  ir ++ + tvlt+ahrl ti+ y rvlvl+ g v e+d+p+ ll++ g fy m+  +g
  MMETSP1174-20130828|22166_1  508 DPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCEKTG 620 
                   5677899*****************************************************************************************************98766 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.1   1.1e-63     8e-62     923    1332 ..      73     470 ..      66     479 .. 0.88
   2 !   55.4   0.0   5.9e-18   4.3e-16    1340    1447 ..     507     614 ..     500     629 .. 0.92

  Alignments for each domain:
  == domain 1    score: 207.0 bits;  conditional E-value: 1.1e-63
    TIGR01271  923 sayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlff.i..avvfiaiatndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevgl 1332
                   s+y  ++ y+g +  +la   lr +    t +  s  lh +++ +v++ap   +++   grilnrfs d+ +id     t++ +i  +++   + +v+++  p++l  +i v v+   +   +l+++++lk+l+s a+sp+++h+  s++gl t+raf     ++      +n   a  ++ +++ rw+ +r++ +  +   +  a++f      +      g+il  a    s +  ++++  +++  m sv+r+  +  lpqe +               v+ ++     wp+gg++tv dl  ky ++   v++ +sf v a  +vg++grtg+gkst+  allr+l+  eg i idgv   ++ l++ rk + v+pq   +++gt+r nldp++++ d ++ +  + v +
  MMETSP1174-20130828|22166_1   73 SSY--FWSYIGATLFFLAAIALRFFCQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINIPWLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWMGFRLNCLSAVVSgTtgAMIFFFGKEYGLTAALSGLILNYATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAAT--------------VVPDHRPPSNWPAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEaQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDEWDDGQLRQALDRVQI 470 
                   455..56788889999**99*******************************************************************99988888899******99888888777666667789**********************************9877777666677777777777777889*******98865543131144444444455566778*******************************************433..............4445555678********************************************************986269*************************************************99998888865 PP

  == domain 2    score: 55.4 bits;  conditional E-value: 5.9e-18
    TIGR01271 1340 pdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllneasllkq 1447
                    d l + l +gg  ls g +ql+clar++l   ++l++de +a +dp t   i+k +++ +sn tv+   hr+ +++  ++ lv+++  v +yd+   ll+   ++ +
  MMETSP1174-20130828|22166_1  507 QDPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYR 614 
                   56677899***************************************************************************************9999987776655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   1.7e-32   1.3e-30      90     451 ..     108     472 ..      80     481 .. 0.81
   2 !   80.3   0.1   3.1e-25   2.3e-23     462     564 ..     512     614 ..     503     619 .. 0.94

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 1.7e-32
    TIGR02203  90 lRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvret.ltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfg.gqeaeakRfdavsnrlrrlalkv..asasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekde...Gtraler..vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkd 451
                  l  +l++ ++++p+  +d++++g++l+r+ +d + + ++a++ +++++    +  ++++++ + + W l++ +vvl+ +   +++++ +  r++++    + + +     e+++g   ++ f+ gq ++++    v++ +         ++  +     +  ++s + +++++    +    a   G +  + t+    +++     + +a++   + + e++ +    p+e+ +    +r + +  + G++ + ++  +y+++   ++++is++v a   v +vGr G+Gkst+   l R +e ++G+i++Dgvd+  + L++LR+++a+v qd vLF +ti  n+   +  e d+ ++++al   ++++
  MMETSP1174-20130828|22166_1 108 LHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVfMPFLSAIVIAINIPWLLAICIVVLV-MAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDvGQRMKEQNMSLVNDANAAELYLFcaQRWMGFRLNCLSAVVSGTTGAMIFFFGKEYGLTAALSGLILNYATSFCSYMTAT---IQAQATMEMSMNSVERIGEYCRLPQEAATvvpDHRPPSNwpAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFD--EWDDGQLRQALDRVQITE 472
                  66788889999******************************99999887542778999999999****999887765.44557788888889999999999999******************967888888888888776654333300333455555555666666777777777777777777899999999988766654...3468899999999****99999999987722234555556799**********************************************************************************************99986443..467777777777666665 PP

  == domain 2    score: 80.3 bits;  conditional E-value: 3.1e-25
    TIGR02203 462 tevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYas 564
                  +e+ e g++Ls G Rq l +aRall++  +L++Deat+ +D e + ++q+ +   + + t l +ahRL ti   Dr++vl++G ++e  t   Ll+++G + +
  MMETSP1174-20130828|22166_1 512 MELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYR 614
                  677889*********************************************************************************************8754 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   3.6e-33   2.7e-31     264     592 ..     149     480 ..     103     493 .. 0.76
   2 !   71.6   0.1   1.2e-22   8.9e-21     591     691 ..     508     608 ..     503     611 .. 0.94

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 3.6e-33
    TIGR03375 264 atltalvDLpfvllfllvialiggp.lvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvsl....klrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiA..aviLsgRalaPlaqlaglltryqqaktalesldelmklpveree...ekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkG 592
                   t+++++   f+ ++ ++++ i  p l+++ +v++++++ v+ +  +  ++l +  +++ +   a+  es++gl t++a    +r++++  ++v+    ++l     +r +   l  l+a+v   +  ++  +G    +  +l+  gLi   a+   + + a ++      + ++ + +++e++ e  +lp+e  +   ++r  s+    Gei + ++ +kY+ +   ++k +s+++ + + v+i+Gr+G+GKst+   ll+++e++eGs+++dgvdi  +  +dlr+ni++vpqd++Lf+Gt+r N+   ++  +d +l +a++++ +te+ +k+ ++
  MMETSP1174-20130828|22166_1 149 GTIMTFIGCVFMPFLSAIVIAINIPwLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELylfcAQRWMGFRLNCLSAVVSGTTGAMIFFFGKEYGLTAALS--GLILnyATSFCSYMTATIQAQ----ATMEMSMNSVERIGEYCRLPQEAATvvpDHRPPSNWPAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDE-WDDGQLRQALDRVQITELWAKKNSS 480
                  467777777766554444433333223334333333333333333333455555555666666899**********************99999998887776222144555566667788899999999999997665666665..666401333334444444333....345566778888999999***987522267778888899***************************************************************************************************9987.9*************99998887765 PP

  == domain 2    score: 71.6 bits;  conditional E-value: 1.2e-22
    TIGR03375 591 kGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                  + l + ++e+G +LS G rq++ laRall++ ++l++DE t+++D ++++++ + +++ l++ T++ v+Hr   +   dr++vl++G ++  ++ +++lea
  MMETSP1174-20130828|22166_1 508 DPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEA 608
                  5667999**********************************************************************************999988888876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1     1e-32   7.7e-31      32     434 ..      49     450 ..      21     474 .. 0.73
   2 !   73.1   0.0   5.4e-23   3.9e-21     469     571 ..     513     615 ..     507     618 .. 0.94

  Alignments for each domain:
  == domain 1    score: 105.2 bits;  conditional E-value: 1e-32
    TIGR02204  32 avtLslplavrklideGfskeesellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllks.vvGaslsialrnlllliGalamlvitsvkltslv..llavPlvllPillfgrrv.rklsre..sqdrladasaya..gealeaiktvqayaseeaersrfdaavekayeaarkrikaralliav..vivlvfgav..vlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksd..ikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleni 434
                  +v L   l +   +d+  ++   + + ++f   +  +l    a alrf+   +   r +  l  ++ + +++  ++++d++  g +l r+++d + +   ++G         ++++iG++ m ++ ++ ++  +  lla+ +v+l + +   ++  + +re    d+ a++  ya  +e+++ + t +a+   ++ +++  + v++a  a      a+ ++      +  v+++   +++ ++G +  l+ +ls+  L     ya    + ++a  +  + ++ +  ++er+ e  +  ++    +P +      ++ gei++ ++ ++y + p   +++g++++v +   v +vG +GaGkst+   llr  + q+G+i +dGvd+ ++  e+lr+++a+vpqd++lf++ ++ n+
  MMETSP1174-20130828|22166_1  49 LVGLLFKLQLTAWLDD--MDTGGSPVSSYFWSYIGATLFFLAAIALRFFCQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDReAMG--------TIMTFIGCVFMPFLSAIVIAINIpwLLAICIVVLVMAFRVAKIyLQSARElkRLDSTAKSPVYAhfTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWMGFRlnCLSAVVSGTtgAMIFFFGKEYGLTAALSGLILN----YATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEaaTVVPDHRPPSNWPAGGEITVTDLCLKYESSP-GYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  3444444455555555..334456789999999999999999***************************************************9988641455........5555666665555554444432222555555554444333222033333311236666665555227*****************9999999999999998888888888754311333344433113456778888888888876665....444444444444444555666677899999986654441155788888888999****************9.7799***********************************************************************9988775 PP

  == domain 2    score: 73.1 bits;  conditional E-value: 5.4e-23
    TIGR02204 469 llGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarl 571
                  +l e g +Ls G +q + +ara+l+++++L++deat+ +d e++ ++q+ +    ++ t l +ahrL t++  dr++vl++G + e  t a+L+++ g + r+
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRM 615
                  68899***************************************************************************************99887766555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   1.3e-29   9.5e-28     204     551 ..      98     450 ..      78     454 .. 0.78
   2 !   78.8   0.0   8.2e-25     6e-23     586     691 ..     513     618 ..     504     621 .. 0.96

  Alignments for each domain:
  == domain 1    score: 94.7 bits;  conditional E-value: 1.3e-29
    TIGR01846 204 ahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsviv..spilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqai....eliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteassagka....alpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdni 551
                   ++  r  + l ++l   ++  P +++++  vG ++ r   ++++i     g+ +t +  +++ ++   v+    p l  + +v lv+ + +  i   s++  kr+++    ++   + ++es+ g+ t++a  v +++k++    +    aa   +  +  + +  +    ++++ +t a++++fG +  l+ +ls   l     ++ ++++ +    q+         ++er+G+    P+ea +        ++    G+i++ ++ ++y+     v++ +s++++a  ++GivG++G+Gkst++  l r+   ++G +++dgvd++ +    lr++++vv q+ vlf ++ir n+
  MMETSP1174-20130828|22166_1  98 FRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSsDMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINIPWLLAICIVVLVMAFRVAKIYlqSARELKRLDST--AKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWMGFRLnclsAVVSGTTGAMIFFFGKEYGLTAALSGLILNYATSFCSYMTATI----QAQATMEMSMNSVERIGEYCRLPQEAATVVPDhrppSNWPAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  334445567899**************************85389***888888777765444444444445556678888887777776655554440144444666664..455667889**********************99988888888877777666665544111167888999****************9766666667777777766....555566778889*************99844330011444567**********************************************************************************************9886 PP

  == domain 2    score: 78.8 bits;  conditional E-value: 8.2e-25
    TIGR01846 586 evgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqq 691
                  e++e G++ls G rq + laral+ + r+l++deat+ +d e++a i++ +r+   + tv+++ahrl t+   dr+lvl++G ++e  + + ll+ eg++ ++ ++
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCEK 618
                  789*************************************************************************************************999765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   1.7e-28   1.3e-26     197     596 ..      76     472 ..      12     491 .. 0.77
   2 !   80.7   0.1     2e-25   1.5e-23     606     708 ..     511     615 ..     503     617 .. 0.93

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 1.7e-28
    TIGR03796 197 llgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlv.vfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatall....svlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihd 596
                  +++ + ++l+  +  +l+     r +i+ ++a   ++++ +++ P+ ++++   g i +R +++ +  +  +   + t + +v + ++ a+v+++  ++l +i+i++ ++ + + ++  ++  +++r   + ++ +++   ++++ ++tl+A  + + + ++ + +   +  ae  l  a+ ++    + l ++++  t a+i  +g    l ++l+ G ++ +    +sf + +++ +++ ++++     +er+ +  + p++ ++      +++  ++    G+++++++   y+     +++++s+++   + v +vG  G+Gksti+  +  + e  +G+i++Dg++  ++  e l++ +a+v qd vlf+gt+r nl  +de   + +l +A+   +i++
  MMETSP1174-20130828|22166_1  76 FWSYIGATLFFLAAIALRFFCQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMpFLSAIVIAINIPWLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWMgfrlNCLSAVVSGTTGAMIFFFGKEYGLTAALS-GLILNYA---TSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATVV---PDHRPPSNWPAGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDE-WDDGQLRQALDRVQITE 472
                  555555666666667888999999**************************************998877766666666666666551666777777788999999999999999999998888888777777788899999************99888888887777777777777777776665111155666666666666666666666666665.4444443...34444445555555555555555556666666555555554...66666666899***************************************************************************************************99997.47777888777777666 PP

  == domain 2    score: 80.7 bits;  conditional E-value: 2e-25
    TIGR03796 606 eaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarL 708
                   +el+egg nls G+rq l +ARaL ++  +L++DEat+ +D+et+ +i++ +r    + t++ vaHRL ti   d+++vl++G v+e  t   ll+ eg++ r+
  MMETSP1174-20130828|22166_1 511 LMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDElsNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRM 615
                  5799**************************************************853389****************************************98876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.2   5.3e-26   3.9e-24     194     546 ..      91     449 ..      18     456 .. 0.75
   2 !   76.8   0.0   3.9e-24   2.9e-22     582     683 ..     514     617 ..     507     619 .. 0.92

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 5.3e-26
    TIGR03797 194 laqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqr....iedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkL..sGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsilen 546
                    + +  +R + +++++l+  ++  +++ p+ ++ +  +g +++r ++ +++i r   g++++ +  +++ +l+ +++ +    l ++ ++++++a  v  +      + +r   + ++ + +   + ing+s lr   + +r+  + +     +++ el        +   l+ l+av++  t a++f +    ++ ++  +g  l ++t+f s+++a+++  +t+   ++ v    +   + ++ + v  ++  p +    G+i+v  ++ +Ye++   v++ +s+++ +   v+ivG  G+GKSt+   LL   + ++Gs++ DG d+ ++ ++ +R+++ vV Q+  l++g+i  n
  MMETSP1174-20130828|22166_1  91 ALRFFCQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSdMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINIPWLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCaqrwMGFRLNCLSAVVSGTTGAMIFFFGKE-YGLTAALSGLILNYATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATVVPDHRPPSNWpaGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFN 449
                  445677899999999******************************87647888888777777666666666666555544333333344444444444444433333344444455667789999***********9999999888888777766666655444000044455666666666666666665555.4555555799*****************999998888777776666666666666666666776642279*********************************************999999999*************************************99655 PP

  == domain 2    score: 76.8 bits;  conditional E-value: 3.9e-24
    TIGR03797 582 isegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek.l.kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelar 683
                  +seggg+lS G rQ l +Aral r  r+l++DEAT  +D +t a + + +   l ++t + +AHRL Ti   dr+lvl+eG v e  +   Ll++eG f+++ +
  MMETSP1174-20130828|22166_1 514 LSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDeLsNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCE 617
                  79*************************************999999998885324379999****************************************9876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.9   1.9e-05    0.0014       6     207 ..      38     236 ..      33     248 .. 0.77
   2 !   77.7   0.0   2.7e-24     2e-22     308     449 ..     340     482 ..     301     495 .. 0.79
   3 !   65.6   0.2   1.2e-20   8.8e-19     450     529 .]     512     591 ..     498     591 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.9e-05
    TIGR02857   6 alaallgvvsallliaqAallarvvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavlta.dwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaa 207
                  + +a+l++ ++l+ + +   l+  ++++   g+++++  ++   + l++l+  +l ++      r   +++ +l  +l++ v +  + +  +++ g++       ++ +d      + + + +v++p + +++++ +  w+ a+ +++ +    +   +  + a + +r    a s + +hf + ++gl+tL++f   ++ ++
  MMETSP1174-20130828|22166_1  38 TGLAVLAISTGLVGLLFKLQLTAWLDDMDTGGSPVSSYFWSYIGATLFFLAAIALRFF---CQFRTQIRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINiPWLLAICIVVLVMAFRVA-KIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKE 236
                  5567777888888888888999999999888899998888877777777765555555...4567777788889999999999999*****************************************99988887641565555554443222222.233456667777777788889*****************87665544 PP

  == domain 2    score: 77.7 bits;  conditional E-value: 2.7e-24
    TIGR02857 308 eaekapltaaass.........slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgle 449
                   +++        +         +++++++ ++ye +   ++k++s++v++ + v++vG  GaGKst+  +ll+++e++eG+i+++g+++ ++  +++rk+ia vpQ P+lf gt++ n+   ++  ++ ++++al+r++++el ++ ++  +
  MMETSP1174-20130828|22166_1 340 VPDH--------RppsnwpaggEITVTDLCLKYESSPgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDE-WDDGQLRQALDRVQITELWAKKNSSSN 482
                  1111........1234466667************9999*********************************************************************************97665.56667************9988776655 PP

  == domain 3    score: 65.6 bits;  conditional E-value: 1.2e-20
    TIGR02857 450 teiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                  +e+ e+g +LS+G+rq l LArallr++++l++DE ta++D+et+a++++ +r+ ++++tvl vaHrl ++  +d+++vl
  MMETSP1174-20130828|22166_1 512 MELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVL 591
                  68999***********************************************************************9976 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   5.4e-33   3.9e-31      93     455 ..     113     475 ..      90     486 .. 0.81
   2 !   49.4   0.8   7.9e-16   5.8e-14     459     530 .]     508     579 ..     485     579 .. 0.90

  Alignments for each domain:
  == domain 1    score: 106.1 bits;  conditional E-value: 5.4e-33
    TIGR02868  93 YerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltrae....kraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas..ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlr 455
                   + + +a + +  r   G +L+r+++D+ +++   + +i+  +  + +  ++  +i ++ ++  l++ +++lv+++ ++ + l +ar+ ++    ++s ++a+ ++ ++g+++l+++ + +++ +q  +  +++ +ae      + ++    + l++++ G + ++    g e  +  +l++ +       + +    ++a  +A ++++ + ++ eRi e  + + ++a++++p   + ++     ++++ dl  +y+ ++  v+kg+s+++++ ++v +vG++GaGKst+  +l+++l++++G++++dgv++ ++  +++r+ ++v++qd+ lF  t+r Nl    ++ +d +l +aL rv++ ++ +
  MMETSP1174-20130828|22166_1 113 MSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMPFLSAIVI-AINIPWLLAICIVVLVMAFRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAElylfCAQRWMGFRLNCLSAVVSGTTGAMIFFFGKEYGLTAALSGLI----LNYATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLP-QEAATVVPDHRPPSNwpAGGEITVTDLCLKYESSPGyVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLD-PFDEWDDGQLRQALDRVQITELWA 475
                  44444566678899999***********************9998887777666555.57888999999999999******************************************87666555554444444444440010444444444456777777777777777777665555554444....446778889999999*******************9999.555555555555444568999************************************************************************************************8.5688999**********9988655 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 7.9e-16
    TIGR02868 459 dGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                  d l  +l egg  lS Gerq l lARaLl + +vl++DE t+++D+et +++ + +++ +++ tv+ v+hrl
  MMETSP1174-20130828|22166_1 508 DPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRL 579
                  55667899**************************************************************96 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   1.8e-27   1.3e-25     230     575 ..     102     450 ..      83     452 .. 0.80
   2 !   65.1   0.0   1.1e-20   8.3e-19     610     710 ..     513     615 ..     504     616 .. 0.93

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 1.8e-27
    TIGR00958 230 arinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvk.llgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqva..eEalsglrTVrSFaaEekEasrfkekleei....lqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgt..lapkn...leGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNi 575
                   r + +++ +l++ +++  +g++d++++G +  R ssD +t+ +    ++  ++  + +  l+++++ +++ + L++  ++ l + + ++k++ +  ++l++   +++ak+   a   E + gl T r F   ++  ++ ++ +++     l l   +      +   + ++  +   ++ ++G +  l+ ++s   L+  l Y  ++ ++++   +    +  +  + e++ ey  R Pq   ++   ++p       G+++  d    Y s p   v+k+++f + + ++v +VG  G GKSt+ + l +  + ++G++++Dg+++  +  + l++++a+V q+Pvlf+g++r N+
  MMETSP1174-20130828|22166_1 102 IRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMpFLSAIVIAINIPWLLAIC-IVVLVMAFRVAKIYLQSARELKR--LDSTAKSPVYAhfTESINGLSTLRAFDVGQRMKEQNMSLVNDAnaaeLYLFCAQRWMGFRLNCLSAVVSGTTGAMIFFFGKEYGLTAALSG--LI--LNYATSFCSYMTATIQAQATMEMSMNSVERIGEYC-RLPQEAATVVpdHRPPSnwpAGGEITVTDLCLKYESSPG-YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  45667899**********************************999888888888877772567777888888888865.55566889999999999998866..59999998887336************87665554444444433110033444444444444555566666667778888888888888764..32..5699999999999999999***************8.8999888775235554312268************99997.689***************************************************************************885 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 1.1e-20
    TIGR00958 610 evgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                  e+ e G  ls+G +q + +ARAL+r+ rvL++DeAt+ +D e+++ +q+    + ++ tvl +ahrL t+   d++lvl++g v e  t + L e e+ ++++
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKviRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRM 615
                  67899*******************************************987788999*************************************999966655 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   5.3e-25   3.9e-23     234     568 ..     111     450 ..      78     477 .. 0.83
   2 !   64.0   0.0   2.8e-20   2.1e-18     603     707 ..     512     617 ..     503     618 .. 0.94

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 5.3e-25
    TIGR01193 234 syikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvya.viiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeav....qqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefke...kkkltelenlngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenl 568
                  + +  +++ P  ++    vG i+ rf+   + id  a  ++  f+   ++  ++ +++  ni  +l + +++ v a  +  ++ ++ ++l++    a++ + +   e++nG++t++++ + +  +++  s  +d    +l +  a++      + l av+  +   +i+++G  + ++  l+ G +l + +    f + ++  i  q+ +  +  + +r+ e   ++ e  +   +++  ++  + g+i+v d+  +y  +   v++ is+++ + +++ +vG +G+Gkst+   l++  +a++G i ++g+++  +  + lr+ i+ +Pq+P++f+G+i  nl
  MMETSP1174-20130828|22166_1 111 QLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMGTIMTFIGCVFMPFLSAIVIAINIPWLLAICIVVLVMAfRVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDVGQRMKEQNMSLVNDANAAELYLFCAQRWmgfrLNCLSAVVSGTTGAMIFFFGKEYGLTAALS-GLILNYAT---SFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATvvpDHRPPSNWPAGGEITVTDLCLKYESSpGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  45677899999999999**********999999999998999999999999999999999997666666655555515667888999999998889999999********************9999999999999888888777765411115789999999999*************9998.99999974...466667778999*****************999999876222454556667789***********87625799**************************************************************************8876 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 2.8e-20
    TIGR01193 603 telseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                   else + ++s+G +q l+larall + +vl++de+t+n+d  t+ +i + +  +l++ t++ vahrl      d+++vl+eG ++e  +   ll+++G ++++++
  MMETSP1174-20130828|22166_1 512 MELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRdELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCE 617
                  589******************************************999776654699******************************************9999986 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.1   6.7e-22   4.9e-20      96     429 ..     113     450 ..      35     455 .. 0.79
   2 !   69.2   0.0   8.1e-22   5.9e-20     464     572 ..     513     621 ..     493     631 .. 0.93

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 6.7e-22
    TIGR01192  96 fgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhla....tfvallllipvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsyn...rieaetkalkkftekllsaqypvldwwala.sglnriastislviilvigtvlvkkgelsvgeviaf.igfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkgavefrdisfefanssq.gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsireni 429
                  ++ ++  p  w+++    +    l r s  + ++  e m + ++     f+ +l  i +a+++ + l++ +vvl +++  +ak+ ++ ++e +         v++h ++si  +s +++++   r++++  +l + ++      +    w  +   +l  + s  +  +i+ +g  +     ls g ++ +   f+  +   + q +a +++ +++  ++ ++  l + +         ++     g++   d+  ++  s    v+ +sf++ a  +v ivg tgagk+t+   l r+ + ++g i+idgvdi ++  e lrk ia v qd  l+  +ir n+
  MMETSP1174-20130828|22166_1 113 MSCVVKAPTGWYDRTPVGRI---LNRFSSDMQTIDREAMGTIMTfigcVFMPFLSAIVIAINIPWLLAICIVVLVMAF-RVAKIYLQSARELKRLDSTAKSPVYAHFTESINGLSTLRAFDvgqRMKEQNMSLVNDANAAELYLFCAQRWMGFRlNCLSAVVSGTTGAMIFFFGKEYGLTAALS-GLILNYaTSFCSYMTATI-QAQATMEMSMNSVERIGEYCRLPQEAATVVPDHRPPSNWPAGGEITVTDLCLKYESSPGyVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  55666677777766655554...4466666777777777665431111344455568889999999**9999998876.589**********999999999*****************996333777777777766666555555666787775256667777667778889999998888887.667766256888887766.7889999999**********9987665554444455556679************9886515789************************999*********************************************9886 PP

  == domain 2    score: 69.2 bits;  conditional E-value: 8.1e-22
    TIGR01192 464 lvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasgl 572
                   + e g +ls gerq l +ara+l++  +lv+deat+ +d et+ar+++ i     n t + +ahrl t+   d vl l++g ++e  +   l + +g+f+++  ++g 
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCEKTGD 621
                  567999*********************************************888889*********************************************9998885 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.5   8.8e-19   6.4e-17     107     436 ..     139     473 ..      79     492 .. 0.62
   2 !   52.2   0.0     1e-16   7.6e-15     447     538 ..     513     603 ..     511     608 .. 0.92

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 8.8e-19
    TIGR01842 107 DldqlrqFltgtgliaffDlPwlpiyllvvfllh.pylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalsk..vlRivlqslvlg..lGaylaikgeita.Gmiiagsilv..graLaPidqaievWkqfsaarkaykrlkelleelpareealklPep......egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhel 436
                  D++++ +   g ++++f+   ++p   ++v +++ p+l  +    ++v++++a+  +++  ++++e +++   ++ +       +e+i+ l+ l++     +++k++ +s  + a+ +   l  + +   +R+   s+v++  +Ga++   g+  +  + + g il   +   + +   i+    +  + ++ +r+ e  +  +++++ ++  +p       ge++v ++ l   ++  +++kgisf + a ++++i+G  g+Gks++   l+ + + ++Gs+ +Dg+d+  +  e+l k+i  +Pqd  Lf+Gt+  n+  f+e  d+ ++ +a    ++ el
  MMETSP1174-20130828|22166_1 139 DMQTIDREAMG-TIMTFIGCVFMPFLSAIVIAINiPWLLAI----CIVVLVMAFRVAKIYLQSARELKRLD--STAKSPVYAHFTESINGLSTLRAFDV-GQRMKEQNMSLVNDANAAELYLFCAQRwmGFRLNCLSAVVSgtTGAMIFFFGKEYGlTAALSGLILNyaTSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATVVPDHRPpsnwpaGGEITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIRFNLDPFDE-WDDGQLRQALDRVQITEL 473
                  66666444444.56667777777666555555543554322....33333333333333333333333333..33333334455667777776665432.2333333334444444333333333331145666666655322577776666443303333333332112233445566666666666777777776666655555544432222111111489999999999999999*************************************************************************************9.888888877766666665 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 1e-16
    TIGR01842 447 eigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGere 538
                  e++egG +Ls G rq + LaRal ++ +++v+De  an+D e ++ + k + +    ++tv++++hr   +   d++lvl++G + ++ +  
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD-ELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPA 603
                  5789****************************************999988876.68899*************************99997765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.9e-08   1.4e-06       3     102 ..     356     450 ..     354     487 .. 0.86
   2 !   50.8   0.0   4.2e-16   3.1e-14     137     232 ..     513     607 ..     507     613 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.9e-08
    TIGR00972   3 evknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnv 102
                  +v++l l y +    ++k +++++++ + ++++G +G+Gkst+  +l r+ ++      eG+++++g di +       lrk++ +v q p  f+ +i  n+
  MMETSP1174-20130828|22166_1 356 TVTDLCLKYESSPgyVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQ-----EGSIVIDGVDIGAM--GLEDLRKNIAVVPQDPVLFTGTIRFNL 450
                  6777888887764449*********************************99998.....9**********887..6778***************99997665 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 4.2e-16
    TIGR00972 137 klkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqife 232
                  +l++ + +Ls G +q lc+aral  e  vl++De t+ +Dp++ ++i+++i++  ++ t++ v h +       d++ ++ eG+++e+++++ ++e
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAALLE 607
                  57788889***********************************************************965.578***************9998876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   7.5e-11   5.5e-09       2      88 ..     356     443 ..     355     463 .. 0.89
   2 !   37.7   0.0   4.2e-12   3.1e-10     119     214 ..     509     600 ..     494     610 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 7.5e-11
    TIGR03410   2 evenlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifp 88 
                  +v++l ++Y++s   v++++s++v++ + v ++Gr g+Gk+t+  al+ +l++++G+i ++g di ++   e  ++ ia vpq   +f+
  MMETSP1174-20130828|22166_1 356 TVTDLCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMG-LEDLRKNIAVVPQDPVLFT 443
                  688999999998446**************************************************9886.5678999******877665 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 4.2e-12
    TIGR03410 119 PvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaeg 214
                  P+l e+    gG+Ls G +q l +aRaL+ e ++l++De t  + P   + i+kvi++  + ++ ++l v + l     + dr+lvl++G v++ +
  MMETSP1174-20130828|22166_1 509 PLLMELS-EGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYD 600
                  6666654.469*********************************************96..445689999999998665.57999999999988765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.3e-09   2.4e-07       4      86 ..     357     442 ..     354     476 .. 0.80
   2 !   42.7   0.1   1.3e-13   9.3e-12     128     223 ..     516     609 ..     480     615 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.3e-09
    TIGR03864   4 veglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlD 86 
                  v++l  +y ++   +++++s++v+  + v ++G  GaGkst+   l r++ea+eg+i + G+d+ +   e l+ ++ vv q++ l 
  MMETSP1174-20130828|22166_1 357 VTDLCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRkNIAVVPQDPVLF 442
                  5555555544311689**************************999********************999988862699999988774 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.3e-13
    TIGR03864 128 ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaea 223
                  e   +L+ G+r+ + +arall e ++L++Deat+ +D+e+ a++++ +r+    ++ +vL   h +  +   dr++vl++G vl   ++a+l +++
  MMETSP1174-20130828|22166_1 516 EGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDEL--SNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEAE 609
                  55568999*****************************************998..77899*************************999999987765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.2e-10   1.6e-08       3      86 ..     356     437 ..     354     446 .. 0.85
   2 ?   -0.8   0.0       2.5   1.8e+02     109     143 ..     444     478 ..     437     486 .. 0.83
   3 !   33.1   0.0   1.1e-10   8.2e-09     145     235 ..     520     607 ..     511     614 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.2e-10
    TIGR02315   3 evenlskvypng.kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifq 86 
                   v++l  +y++    ++k +++++     v+++G+ GaGkst+  ++ r+ e ++gsi+++g +++++  ++l   rk+i+++ q
  MMETSP1174-20130828|22166_1 356 TVTDLCLKYESSpGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDL---RKNIAVVPQ 437
                  67777777875514689*************************************************8776555...667777766 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 2.5
    TIGR02315 109 stlksllglfseedkekAlelLervglaelaakra 143
                   t++  l  f e d  +  ++L+rv+++el ak+ 
  MMETSP1174-20130828|22166_1 444 GTIRFNLDPFDEWDDGQLRQALDRVQITELWAKKN 478
                  678888999999999999*********99887764 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 1.1e-10
    TIGR02315 145 qLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldd 235
                  +Ls G++q + +aRal+++ ++++ DE +a +Dp++  ++ +++++  + ++ tv+   H++     + dr++ l++g ++ ++++++l +
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYDTPAALLE 607
                  79****************************************9998..456678888899998765.77***********97777766644 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.9e-10   2.9e-08       2      92 ..     355     442 ..     354     449 .. 0.91
   2 !   35.0   0.1   3.4e-11   2.5e-09      90     215 ..     472     595 ..     443     596 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.9e-10
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkll 92 
                  i++ ++  +y+++    +++++++++  + v +vG +GaGkst+   +l i ++++G i + g d++ +    +  lr++i +v qd  l+
  MMETSP1174-20130828|22166_1 355 ITVTDLCLKYESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMG---LEDLRKNIAVVPQDPVLF 442
                  667788999***********************************9999******************9875...6679*********98776 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 3.4e-11
    TIGR00960  90 kllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                  +l  +++   n   +l   G+ +  + ++     e+  l     +   +ls Ge+q +++ara++++  +l+ de t+n+d+e+   i +++++ +    tvl  +h    +  +  rvl+l++G+
  MMETSP1174-20130828|22166_1 472 ELWAKKNSSSNSLSSLDGKGMAPALTAKKGGDQQEQDPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD-ELSNATVLTVAHRLGTIIFY-DRVLVLNEGY 595
                  5555666666666666666666666666666666666666666666779******************************************987.56678999999988777655.5888888886 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   2.3e-09   1.7e-07       9      75 ..     372     439 ..     364     445 .. 0.92
   2 !   36.9   0.0   7.1e-12   5.2e-10     124     246 ..     520     641 ..     510     663 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.3e-09
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvre.pdevRrsigvvpqka 75 
                  v+g++++v++ + +g++G  GAGK+t+   L  +l+ ++G+ ++ G D+     +++R++i+vvpq+ 
  MMETSP1174-20130828|22166_1 372 VKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMgLEDLRKNIAVVPQDP 439
                  99***********************************************7651579**********86 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 7.1e-12
    TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevvev..errdikelkkevsllaaeltesll 246
                  ++s G r+ l la++l+ + +vl +DE t  +Dp+t + i ++i++  + + t+l  +h l  +  + drv ++++G ++  dtp  L e  g+ + ++  ++ d+++l  e+++ a  ++es++
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS-NATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAALLEAEGQ-FYRMceKTGDLENLVREAGASANGFEESEE 641
                  6899****************************************99764.789********987.678*******************9965554.333211344666666666666555555554 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   4.8e-10   3.5e-08       9      84 ..     372     443 ..     366     485 .. 0.91
   2 !   32.9   0.0     1e-10   7.7e-09     129     220 ..     520     608 ..     515     627 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 4.8e-10
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfP 84 
                  v+ +++++     + i+G +G+Gkst+   l r++e  +G i idG+di  +  ++l    rk ia+v q+  lf 
  MMETSP1174-20130828|22166_1 372 VKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDL----RKNIAVVPQDPVLFT 443
                  8899999999999********************************************....9******99988875 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1e-10
    TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrn 220
                  +ls G +q + laral  e  +l+mdea + +dP +   +q+ + +  +  + t++ ++h l   +   dr+ +l++G ++   tP  +l+ 
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGT-IIFYDRVLVLNEGYVLEYDTPAALLEA 608
                  79***************************************98876..556789********86.6689*****************999875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.6e-09   1.9e-07       6      91 ..     359     442 ..     355     450 .. 0.85
   2 !   34.4   0.0   5.1e-11   3.7e-09     136     197 ..     519     579 ..     460     594 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.6e-09
    TIGR02673   6 kvskeyaag.veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkll 91 
                  ++ ++y+++   ++k +s+++ + + + ++G+ GaGk+t+   ll ++++++G++ ++g d+  +    l  lR++i+vv qD  l+
  MMETSP1174-20130828|22166_1 359 DLCLKYESSpGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMG---LEDLRKNIAVVPQDPVLF 442
                  5566676441457899************************99999****************99885...7789**********7665 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 5.1e-11
    TIGR02673 136 eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathde 197
                   +ls Ge+q   +aRa++++ ++l+ De t n+D+e+ +ri +++++  +  +tv+ ++h  
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS-NATVLTVAHRL 579
                  68******************************************988654.56788888865 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.5e-12   1.9e-10       7      77 ..     371     439 ..     364     480 .. 0.91
   2 !   24.0   0.0   6.8e-08     5e-06     127     175 ..     520     568 ..     514     579 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.5e-12
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdp 77 
                  v+kg++++v   ++++++G+ GaGkst+ l l  +l  ++G +++dG +   +  gl +lrk++a+v qdp
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVD--IGAMGLEDLRKNIAVVPQDP 439
                  89*********************************************65..5789**************99 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 6.8e-08
    TIGR01166 127 llsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre 175
                   ls Ge++ + +a a+  + +vl++de ta++dp+   ++ +++r    
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS 568
                  69*****************************************986443 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   6.4e-09   4.7e-07      21      95 ..     372     443 ..     367     481 .. 0.81
   2 !   31.9   0.0     2e-10   1.5e-08     139     226 ..     519     603 ..     514     610 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 6.4e-09
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnlls 95 
                  ++ +s++vp+   +g++g +gagkst+   +  + +  +g++++dg+d+  +   +l   r++i ++ q   l++
  MMETSP1174-20130828|22166_1 372 VKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDL---RKNIAVVPQDPVLFT 443
                  6789**********************9766555555789*********999876665...777777777666555 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 2e-10
    TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvs 226
                   nls g++q + +aral  e +vl+ deat+ +dp t   i +++++     + t+l ++h +  +    d+v v+++g ++e +t +
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDE--LSNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYDTPA 603
                  69***************************************9999874..4589*********9885.689***********999865 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   1.2e-08   8.7e-07      15      83 ..     370     438 ..     355     441 .. 0.92
   2 !   33.6   0.1     7e-11   5.1e-09     137     225 ..     520     606 ..     515     610 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.2e-08
    TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqd 83 
                   +v+++   +Pa +  g++G  G+Gkst+   l  +l++++G++ ++g+d+ a+      +++a+v qd
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQD 438
                  699**************************888889********************9999999**99997 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 7e-11
    TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225
                   ls Gerq   laral +e ++l++de t  +d ++   + +++r+   +++tv+   h l     + d+v+vl++G v    +pa +l
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDE-LSNATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAALL 606
                  599******************************************99.6789999999***975.577***********9988888777 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.1e-08   1.5e-06       3      85 ..     355     440 ..     354     446 .. 0.86
   2 !   31.6   0.0   3.3e-10   2.4e-08     132     218 ..     519     604 ..     503     628 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.1e-08
    TIGR03522   3 vevsdlsklygkq..kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnP 85 
                  ++v+dl  +y +   ++++ +sf++   + vG +G  GaGkst+   l   l+a+ Gs+ ++g d+    le  rkni  +P+   
  MMETSP1174-20130828|22166_1 355 ITVTDLCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEdLRKNIAVVPQDPV 440
                  67888888887643389************************************************988776537999999987655 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3.3e-10
    TIGR03522 132 galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkklee 218
                  g+ls G rq   la+all + +vl++de t+ +dP+    i++vi++   + tv+  +h +  +    drv+++n+G ++  ++   
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAA 604
                  789********************************************99**********99887.678*********9987666555 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   3.7e-08   2.7e-06      19      74 ..     370     425 ..     356     432 .. 0.85
   2 !   33.0   0.0   1.2e-10   8.9e-09     139     219 ..     518     596 ..     507     598 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.7e-08
    TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklss 74 
                   v+kg+s+++ +  +v+ivG +G+Gkst+   l  + ++ +G+++++G ++ ++  
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGL 425
                  589*************************966666666789*********9988865 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 1.2e-10
    TIGR02211 139 pselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                   ++ls Gerq   +aral+ + ++++ de t+n+d +t  +i +++++  + +n ++l v+h l  +   drvl l++g +
  MMETSP1174-20130828|22166_1 518 GGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTIIFYDRVLVLNEGYV 596
                  679******************************************985..56788999*******************9976 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.3e-08   9.2e-07      25      96 ..     370     438 ..     357     445 .. 0.88
   2 !   28.6   0.0   2.7e-09     2e-07     150     237 ..     520     604 ..     513     617 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.3e-08
    TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqd 96 
                   v++++s+++ +  +v+++Gr+GaGkst++  ll + + ++G++   G+d+  +  +    +r+++ +v qd
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLE---DLRKNIAVVPQD 438
                  6999**********************************************9998765...567888888888 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.7e-09
    TIGR02769 150 qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvae 237
                  +ls G  q +++aral  e +++v+dea +n+d    a i + +++    +  ++l ++h l  +  f +rvlvl+eG ++e  + a 
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDE--LSNATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAA 604
                  6899************************************9998753..344567899***9987.699***********99776555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-05   0.00095      14      63 ..     370     419 ..     355     439 .. 0.85
   2 !   36.4   0.0   9.5e-12   6.9e-10     115     236 ..     489     607 ..     449     615 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.3e-05
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeq 63 
                   v++g++++v a   v ++G +G+Gksti   l+ + + +eGsi ++g  
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVD 419
                  5899*************************8888888889*******9865 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 9.5e-12
    TIGR03005 115 vkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236
                   kG+a+a + k+  +  +   l     +   +ls G++q + +aral  + +vl++de+t+ +dpe    + +v+r+  s  + t+l v+h++g    f drvl ++ G + e   p  +++
  MMETSP1174-20130828|22166_1 489 GKGMAPALTAKKGGDQQEQDPLLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS--NATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAALLE 607
                  56666666666666666666666666666789********************************************9665..5699********76.699**************99998876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.8e-08   1.3e-06      18     108 ..     370     460 ..     355     517 .. 0.77
   2 !   27.2   0.1   5.2e-09   3.8e-07     135     250 ..     520     633 ..     512     644 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.8e-08
    TIGR01288  18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpar.arlarakigvvpqfdnldreftvrenllvfgryfgls 108
                   vv+ +sf + a    g++g  gagksti+  +l +   +eg i + g ++ a      r +i vvpq   +    t+r nl  f  +   +
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMgLEDLRKNIAVVPQDP-VLFTGTIRFNLDPFDEWDDGQ 460
                  58999****************************************9999998862467899******954.445668888887776665555 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 5.2e-09
    TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqigcdvieiyggdldelselirpya 250
                  +ls g ++ l laral+ + ++l++de t+ +dp +   i + +r  l+   t+l  +h +     + dr+ vl++g  +    p al++ +     +    gdl++l +  +  a
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSN-ATVLTVAHRLGT-IIFYDRVLVLNEGYVLEYDTPAALLEAEGQFYRMCEKTGDLENLVREAGASA 633
                  6999999***************************************9986.588888888865.5789********************9977655555556666666665555555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.5e-06   0.00047       6      96 ..     365     450 ..     360     474 .. 0.81
   2 !   33.8   0.0   6.1e-11   4.5e-09     128     223 ..     517     609 ..     508     651 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.5e-06
    TIGR02142   6 ekrlgdfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenL 96 
                  e+  g     +++++p+   +++ Gr G+Gk+++  ++  ++ ++eg iv+dg  +    + + l   ++++++v q+  LF+  ++r nL
  MMETSP1174-20130828|22166_1 365 ESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIG---A-MGLEDLRKNIAVVPQDPVLFTG-TIRFNL 450
                  5555666667999*********************99999**************8553...2.5678888899999999999974.455555 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 6.1e-11
    TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsael.kiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                    g+Ls Ge+q   ++RAlL + ++L+mDe  a +D +  + i      +++el +  +l v+H l  +  + drv+vl++G v    +++++l+ +
  MMETSP1174-20130828|22166_1 517 GGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKV---IRDELsNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYDTPAALLEAE 609
                  5689*************************************99755...556652467899*****9986.78***********9999888877655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   5.7e-09   4.2e-07       2      72 ..     372     440 ..     371     446 .. 0.90
   2 !   23.1   0.0   1.1e-07   8.4e-06     125     215 ..     520     607 ..     513     615 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.7e-09
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPr 72 
                  v+++++++     +++vG  G+Gks+ +la+l +l+    + +G+i++dg ++ a+  +   ++ia++ q+P+
  MMETSP1174-20130828|22166_1 372 VKGISFHVPACSSVGIVGRTGAGKSTISLALLRILE----AQEGSIVIDGVDIGAMglEDLRKNIAVVPQDPV 440
                  899********************************9....679**********999554445789******96 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.1e-07
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                  +ls G  q + +a all e  +l+ De t+++D  + a++ k +++  e ++ ++l ++h lg +  + d v+v+++G ++e  t+  l++
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYDTPAALLE 607
                  58889999999*******************************9986..667889*********996.67*************999888776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.3e-06   0.00061     296     343 ..     371     415 ..     340     433 .. 0.75
   2 !   33.6   0.0   4.5e-11   3.3e-09     426     517 ..     519     607 ..     494     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 8.3e-06
    TIGR03269 296 vvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevev 343
                  v   v ++s++v      G+vG +GaGk+t+s  l+ +le  +G +++
  MMETSP1174-20130828|22166_1 371 V---VKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVI 415
                  3...45678888888888888888888888888888888888887654 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 4.5e-11
    TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareel.eetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                   +ls+Ger  + la+ l++e r++++de t  +dp t  ++++ i   r+el + t + v+h +  +    dr+ ++ +G +++   p+ ++e
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVI---RDELsNATVLTVAHRLGTII-FYDRVLVLNEGYVLEYDTPAALLE 607
                  589***************************************998...67773568889****99875.68********99999988887765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     4e-06   0.00029       6      93 ..     352     443 ..     346     450 .. 0.87
   2 !   32.2   0.0   1.7e-10   1.2e-08     138     231 ..     520     609 ..     511     622 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4e-06
    TIGR03258   6 tsGvvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth..lppykrnlallvqnyalfp 93 
                   + + + +l ++y++    v++ +s+++ a   + ++G++G+Gk+t+  a+   ++a+ G +++ + d+    l   ++n+a++ q+  lf 
  MMETSP1174-20130828|22166_1 352 GGEITVTDLCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAmgLEDLRKNIAVVPQDPVLFT 443
                  46688999999998763379************************************************986225678999999999988885 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.7e-10
    TIGR03258 138 qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydap 231
                  +ls G +q + laral  + +vl++de  + +d +  a +++    + +el + tvl v+h r  ++++ d++l+++eG ++++ ++ al +a 
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKV---IRDELSNATVLTVAH-RLGTIIFYDRVLVLNEGYVLEYDTPAALLEAE 609
                  6999******************************999998865...568***********9.677899*********************98875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.4e-06   0.00018      12      84 ..     370     438 ..     357     453 .. 0.71
   2 !   30.9   0.0   5.1e-10   3.8e-08     134     203 ..     520     588 ..     508     591 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.4e-06
    TIGR03608  12 eilkklslkiekGelvaivGesGsGKstl.LnilgllekkdsgkvilegkekaklkskkaskllreklgylFqn 84 
                   ++k +s+++ + ++v ivG+ G+GKst+ L +l  le  ++g+++++g +   +     ++ lr++++ + q+
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTIsLALLRILEA-QEGSIVIDGVD---IGAMGLED-LRKNIAVVPQD 438
                  68999***********************95666666665.66******998...33333333.34455555555 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 5.1e-10
    TIGR03608 134 elsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrv 203
                  +ls Ge+q + lar+ll+e ++++ DE t+++D+++ + + +++++   ++ t++ v H        drv
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDEL-SNATVLTVAHRLGTIIFYDRV 588
                  69*****************************************99876.578999999987666555555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.8e-07   1.3e-05      14      85 ..     370     443 ..     355     452 .. 0.82
   2 !   26.6   0.0   1.1e-08   8.1e-07     130     221 ..     520     608 ..     511     618 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.8e-07
    TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfk 85 
                   +++ ++++v+  s v+++G +G+Gkst+  ++  + + ++G i+++G d+  + ++d  ++i  v q+  lf 
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDlrKNIAVVPQDPVLFT 443
                  57999***********************9887777778889**********99887754378999999988886 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.1e-08
    TIGR00968 130 qlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                  +ls G+rq + laral  e +vl++de  + +d +    +++ +r   de++ +tv+    +  ++   dr+ vl++G + + ++++ + ++
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIR---DELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEYDTPAALLEA 608
                  69******************************9998888877666...89999999988888889999*****************9998876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.5e-08   1.8e-06       6     128 ..     360     485 ..     355     500 .. 0.65
   2 !   20.4   0.0     1e-06   7.4e-05     123     201 ..     519     595 ..     512     609 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.5e-08
    TIGR03740   6 lskkfkkq..avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlkk.iGsliesPalyenltarenlkvrtlllglpesrieevlkivdlent.ekkkakqfslG 128
                  l+ k++     vv+ +s++v+  s  g++G  GaGkst+   l  +l+ ++G+i++dg ++     +dl+k i ++ ++P l+   t r nl       + ++ ++ + l+ v++++   kk+++  sl 
  MMETSP1174-20130828|22166_1 360 LCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAmglEDLRKnIAVVPQDPVLF-TGTIRFNLD---PFDEWDDGQLRQALDRVQITELwAKKNSSSNSLS 485
                  555555432269**********************************************9866511155554144444444444.345555554...3445556666666666666553245555555555 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 1e-06
    TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGk 201
                  +++s+G +q l +a all++ ++l++de t  +dP     ++++i+   ++  tv+  +h l  +    d + +++eG 
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSN-ATVLTVAHRLGTII-FYDRVLVLNEGY 595
                  578******************************************986655.68888899998874.567777777774 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   1.7   1.5e-10   1.1e-08      23     432 ..      44     447 ..      35     486 .. 0.69
   2 !   12.0   0.0   0.00017     0.012     468     547 ..     519     596 ..     511     603 .. 0.77

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.5e-10
    TIGR01194  23 slllGlisGlaiilllavinqalheetflrqvllsfvGlsllallsrivadlftayvsq.riiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtll..ilttllvelavtlfglaylaylsvvvfl.ltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsaisesa.vrvadlniieilifilaktvGsll..ls.llvGllltlaayfavidakaisasvlvllyikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksv...dslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvq 432
                  ++ +Gl++ l  + l a +++     +     + s+ G +l  +l  i+  +f  + +q r    l  +l   v+ ap    +r    r+l  ++sd++t++  ++  i+t +      +l ++     + + + + + v ++ + va  +l  +r lk +  +   ++ +  ++t  + Gl  l+   +        +++e     v+d n +e  +f + + +G  l  ls ++ G    +  +f      + + s l+l y       + + +   a  +++++ +  ++e    p+    +  ++      +   +   + + + d+ ++y   ess g+ +  i +++     v ivG  G Gkst+   ll +   qeG +++dG  + +   +d r+  + v  d  lf   + 
  MMETSP1174-20130828|22166_1  44 AISTGLVGLLFKLQLTAWLDDMDTGGSPVSSYFWSYIGATLF-FLAAIALRFFCQFRTQiRASIALHGQLMSCVVKAPTGWYDRTPVGRILNRFSSDMQTIDREAMgtIMTFIGCVFMPFLSAIVIAINIPWLLAIcIVVLVMAFRVAKIYLQSARELKRLDSTA--KSPVYAHFTESINGLSTLRAFDVG------QRMKEQNmSLVNDANAAELYLFCAQRWMGFRLncLSaVVSGTTGAMIFFFGKEYGLTAALSGLILNYATSFCSYMTATIQAQATMEMSMNSVERIGEYCRLPQEAATVVPDH-----RPPSNWpagGEITVTDLCLKY---ESSPGYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDLRKNIAVVPQDPVLFTGTIR 447
                  555666555555555555554433333333344445565544.4455556666666543255566788899999***************************8654321666666666666666666666666543312233344567777777777777765543..334445555556777777776663......3444443146889999999999999999964412441444555555555555555666667788899999888888888888888899999999999999998776665555.....344444212667777777766...89************************************************************************999988775 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00017
    TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkv 547
                   +ls+G+r+ l l  a l e  vl++de +a+ dp       + +  +l     t+l ++h      + dr++ l +G v
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS--NATVLTVAHRLGTIIFYDRVLVLNEGYV 596
                  579********************************876555444444443..4577777777777777777777777766 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-05    0.0025      17      83 ..     375     443 ..     355     451 .. 0.77
   2 !   26.9   0.0   9.4e-09   6.9e-07     127     207 ..     519     596 ..     506     601 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-05
    TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfa 83 
                   ++ v a   v i+G +GaGkst+   +   le  +G+i ++++d   +++   ++ ++++ q+  lf+
  MMETSP1174-20130828|22166_1 375 ISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIgaMGLEDLRKNIAVVPQDPVLFT 443
                  4677889999*************97777889999********998622556677777777777777775 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 9.4e-09
    TIGR01277 127 eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGki 207
                  ++ls G+rq + lar l+re+ +l++de  + +dp     +  +++   +  + t+l v+h+l  ++   ++v+v+++G +
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELS--NATVLTVAHRLGTII-FYDRVLVLNEGYV 596
                  689********************************999999999887665..689*******98765.689******9987 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00014      0.01       7      56 ..     383     437 ..     377     442 .. 0.76
   2 !   29.0   0.1   2.4e-09   1.7e-07     112     203 ..     519     609 ..     507     624 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00014
    TIGR03771   7 ellgllGpnGaGkttllrailglikvakGsvkvagkssrk.g....rreiGyvpq 56 
                    +g++G  GaGk+t+  a+l ++++++Gs+ ++g   +  g    r++i  vpq
  MMETSP1174-20130828|22166_1 383 SSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAmGledlRKNIAVVPQ 437
                  5699*****************************9975432121122455666665 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.4e-09
    TIGR03771 112 GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfe.elagegtailmtthdlaeavatcdrvvlln.grvvadgapdqlqdaa 203
                  G+ls G+rq + +aral  + ++l++de  + +d  +  ++ ++++ el+  + ++l ++h l   +   drv++ln g v+   +p+ l +a+
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRdELS--NATVLTVAHRLGTII-FYDRVLVLNeGYVLEYDTPAALLEAE 609
                  99********************************9999999998861454..568999*****9766.57888777736788889999999886 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0003     0.022       1      54 [.     387     442 ..     387     452 .. 0.85
   2 !   28.7   0.0     2e-09   1.5e-07     100     191 ..     520     608 ..     514     646 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0003
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLf 54 
                  ++G +G+Gk+t+   l  + e ++G+i++dg+d+  +  e  ++++ vv q+  Lf
  MMETSP1174-20130828|22166_1 387 IVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEdlRKNIAVVPQDPVLF 442
                  6799********9999999999************9876543267899999988888 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 2e-09
    TIGR01187 100 qlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklG.itvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                  +ls G rq + lara+  + ++L++De+ + +D +   ++q+ +   +++l   tv+ v+h +   +   dr+ vl++G ++  ++p  + e+
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVI---RDELSnATVLTVAH-RLGTIIFYDRVLVLNEGYVLEYDTPAALLEA 608
                  699**************************************755...55665145666666.6678999******************998876 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-05   0.00081      14     102 ..     370     458 ..     357     493 .. 0.70
   2 !   21.6   0.0   4.2e-07     3e-05     127     182 ..     520     573 ..     512     584 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.1e-05
    TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr.delaeellylgHldglKaeLsalEnLkfyaallq 102
                   +++g+sf++ a   + ++G+ G+GK+t+   l  +l++++G++ +++ ++  +  + l+++++ +  +d +  + +++ nL+ + +  +
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGlEDLRKNIAVVP-QDPVLFTGTIRFNLDPFDEWDD 458
                  6899************************98888889999*******998886654134444444443.4444445566666666666555 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 4.2e-07
    TIGR01189 127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll 182
                  +Ls G ++ l lar ll ++++ ++DE t+++D e+ +++++++++ l++    +l
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNAT--VL 573
                  79*******************************************9987653..33 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013     0.093      20      94 ..     371     442 ..     360     454 .. 0.81
   2 !   28.4   0.0   3.3e-09   2.4e-07     139     219 ..     518     596 ..     467     597 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0013
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttl.ltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnll 94 
                  v++ i++++ +   v + G +G+Gk t+ l+l+  + ++qeG++ + g ++       l ++r++i ++ q   l+
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTIsLALLR-ILEAQEGSIVIDGVDIGA---MGLEDLRKNIAVVPQDPVLF 442
                  77888999999999999**********9455655.5579*****999988755...45778899998888876665 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.3e-09
    TIGR02982 139 pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                    +ls G +q + +aral  + ++++ de ta +d ++   + +++++     ++t+l v+h    +   dr++ +++G++
  MMETSP1174-20130828|22166_1 518 GGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDEL--SNATVLTVAHRLGTIIFYDRVLVLNEGYV 596
                  679*****************************************999875..5789******9999999*******99976 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00018     0.013      18      88 ..     370     442 ..     353     451 .. 0.77
   2 !   25.3   0.0   2.4e-08   1.8e-06     133     224 ..     519     607 ..     514     634 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00018
    TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLf 88 
                   ++k is++v +   v ++G  G Gk+t+  ++  + ++++G+i+++g di ++  +  +++  +v q  +Lf
  MMETSP1174-20130828|22166_1 370 YVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEdlRKNIAVVPQDPVLF 442
                  57899***********************8666666556778**********9875442267777888877777 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 2.4e-08
    TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklg.vttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                  g ls G +q + Laral     +L++De  + +D    +++++ +++   +l+  t + v+h     + + Dr+ v+n+g +  + tP+ + e
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD---ELSnATVLTVAHR-LGTIIFYDRVLVLNEGYVLEYDTPAALLE 607
                  679*****************************999988888887775...4440455556675.568899******************98765 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.3e-12   9.6e-11     468     652 ..     371     591 ..     349     595 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 1.3e-12
    TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg...............................wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake..vgitllsvshrksLwkyHeylLkl 652
                  +++ +sf+v+  +++ i+G  G GKs +   l  +                 +   + ++++  vPq P + +gt+R  +      + f   +  d +L q L+ v++++l  ++ +                               +  + +    Ls Ge+q + +AR +    +  v+DE+t+ v ++ + ++ + +++   + t+l+v+hr   + +++ +L l
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEgsividgvdigAMGLEDLRKNIAVVPQDPVLFTGTIRFNL------DPFD--EWDDGQLRQALDRVQITELWAKKNSssnslssldgkgmapaltakkggdqqeqdplLMELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDelSNATVLTVAHRLGTIIFYDRVLVL 591
                  7999**********************8765554444444445566788885455678899*****************654......3333..356999*************9888888*****************************9999999************************************************8445999*******9888888777765 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.6e-05    0.0056      17      87 ..     372     439 ..     362     447 .. 0.76
   2 !   23.9   0.0   3.9e-08   2.8e-06     402     481 ..     519     596 ..     513     602 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.6e-05
    TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqel 87 
                  +++i++++ a   v++ G  GaGkst+   l  +    + +G i+ +g ++ a ++ d  rk i+++ q+ 
  MMETSP1174-20130828|22166_1 372 VKGISFHVPACSSVGIVGRTGAGKSTISLALLRIL--EAQEGSIVIDGVDIGAMGLEDL-RKNIAVVPQDP 439
                  67888888888888888888888888877666665..4568888888888888888775.56677777765 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 3.9e-08
    TIGR02633 402 arlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGkl 481
                  ++ls G++q   la+ ll + rvl++de t  vd  + + i k+i     +  +++ v+  l  ++   drvlv++eG +
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSN-ATVLTVAHRLGTII-FYDRVLVLNEGYV 596
                  689******************************************876655.46788899999877.78********976 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.3e-06   0.00017     325     386 ..     357     419 ..     345     434 .. 0.78
   2 !   17.1   0.0   4.8e-06   0.00035     443     498 ..     520     577 ..     500     630 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.3e-06
    TIGR03719 325 venlskafgdk..lliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvk 386
                  v++l+ ++++    +++ +sf++p+ + vG++G  GaGkst+   +    + ++G++ i + v+
  MMETSP1174-20130828|22166_1 357 VTDLCLKYESSpgYVVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVI-DGVD 419
                  555666665542268999***********************988888888888888876.4454 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.8e-06
    TIGR03719 443 elsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGca..vvish 498
                  +ls Ger+ + la+ l +++ vl++de t ++d et   +++ + +    a  + ++h
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNAtvLTVAH 577
                  5555666666666666666666666666666666555555555543222220022333 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.3e-06   0.00039      23      68 ..     371     416 ..     364     430 .. 0.92
   2 !   16.1   0.0   1.7e-05    0.0012     150     207 ..     521     577 ..     515     582 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5.3e-06
    TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                  v+k +s++v a   v + G++GaGkst+  +l +   ++ g+i++ 
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVID 416
                  899*******************************999999999875 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.7e-05
    TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifh 207
                   s Ge+q + +aral+ +  +L++de ta +d  + + + ++i++  ++ a+++++ h
  MMETSP1174-20130828|22166_1 521 LSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSN-ATVLTVAH 577
                  688******************************9999999999988765.45555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0028       0.2      17      74 ..     371     428 ..     355     453 .. 0.79
   2 !   24.7   0.0   4.9e-08   3.6e-06     136     222 ..     513     598 ..     497     607 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0028
    TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaei 74 
                   ++ +s++v + +   i+G  GaGk+t+  ++    +++eGs++++g d+  +  +++
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLEDL 428
                  5788999999999999************9999999************99987765554 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 4.9e-08
    TIGR03411 136 kadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvla 222
                  + ++  g+Ls G++q L ++  l++e ++l++De +a +  e  +++ +++++  ++ +v+ v h ++ +  + ++v vl+eG vl 
  MMETSP1174-20130828|22166_1 513 ELSEGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGTII-FYDRVLVLNEGYVLE 598
                  5567789***********************************9*************************997.56789*******996 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.2e-05    0.0038       5      60 ..     356     415 ..     354     429 .. 0.83
   2 !   16.3   0.0   1.5e-05    0.0011     142     219 ..     521     599 ..     514     608 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.2e-05
    TIGR02323   5 evselsksygskkgcr...vsflyp.GevlgivGesGsGkstllkalaarlladaGevty 60 
                  +v++l+ +y s+ g+    +sf  p    +givG +G+Gkst+  al   l a++G++  
  MMETSP1174-20130828|22166_1 356 TVTDLCLKYESSPGYVvkgISFHVPaCSSVGIVGRTGAGKSTISLALLRILEAQEGSIVI 415
                  688888899888776544789*66626899*****************999******9865 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.5e-05
    TIGR02323 142 fsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvves 219
                  +s G +q l +ar+l+ + r+++m e t  +    +ar+  ++r  +   + +v+ v+h l+ + ++ +r+lv+++G v+e 
  MMETSP1174-20130828|22166_1 521 LSVGERQLLCLARALLRENRVLVMdEATANVdPETDARIQkVIRDELS--NATVLTVAHrLGTI-IFYDRVLVLNEGYVLEY 599
                  68899*******************889988877899999878888777..55788999*78876.5667**********995 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00036     0.026     959    1016 ..     385     443 ..     350     487 .. 0.86
   2 !   14.4   0.0   9.2e-06   0.00068    1057    1151 ..     516     609 ..     504     640 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00036
    TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfh 1016
                     ++g  gagk+t    l  +l    g++++ g di +  l+ +r+ + ++pq  +lf 
  MMETSP1174-20130828|22166_1  385 VGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAmGLEDLRKNIAVVPQDPVLFT 443 
                   56799******999888999****************7637*****************96 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 9.2e-06
    TIGR01257 1057 eeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncf 1151
                   e   +ls g ++ l +a a++ + +v+v+de t+ vdp +   i  ++    s  t++  +h +    ++ dr+ ++++g +    tp  l ++ 
  MMETSP1174-20130828|22166_1  516 EGGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDELSNATVLTVAHRLGT-IIFYDRVLVLNEGYVLEYDTPAALLEAE 609 
                   5667899999999*******************************************9999998875.6899*********999999987665544 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0015      0.11       2      55 ..     373     426 ..     372     445 .. 0.84
   2 !   16.8   0.1   1.2e-05   0.00087     113     191 ..     519     594 ..     512     601 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpd 55 
                  k++++++     + ++g +g gkst+   +  + +  +g+++++g +i + g +
  MMETSP1174-20130828|22166_1 373 KGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVIDGVDIGAMGLE 426
                  788899999999*************9666666677899*********9988865 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.2e-05
    TIGR01184 113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltng 191
                  ++ls g +q + +aral    ++l++de    +d  t   +q+ + +  e +++tvl v+h +    ++ drv++l +g
  MMETSP1174-20130828|22166_1 519 GNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTI-IFYDRVLVLNEG 594
                  57999**********************************99986554..4467899******9865.5679**999887 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.1e-06   0.00016       3      87 ..     357     440 ..     355     450 .. 0.81
   2 ?    5.2   0.0     0.036       2.6     146     226 ..     522     599 ..     497     615 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.1e-06
    TIGR01978   3 ikdlhvsvedke..iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqape 87 
                  ++dl+++ e  +  ++kg++ +v +   + i+G+ G+Gkst+s +l      e ++G+i ++g d+ ++  e+  r+ + +  q p+
  MMETSP1174-20130828|22166_1 357 VTDLCLKYESSPgyVVKGISFHVPACSSVGIVGRTGAGKSTISLALLR--ILEAQEGSIVIDGVDIGAMGLEDL-RKNIAVVPQDPV 440
                  6777777776533399**************************998875..68899**************99875.556666666666 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.036
    TIGR01978 146 sGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivks 226
                  s Ge++   + + +l e ++ ++De+ + +D ++   + +++ +   e +   ++t  +rl   i  d v vl +G +++ 
  MMETSP1174-20130828|22166_1 522 SVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD---ELSNATVLTVAHRLGTIIFYDRVLVLNEGYVLEY 599
                  67888777777778888899999999999998888888777754...4344445566669****************99875 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0044      0.32      40     110 ..     371     441 ..     354     447 .. 0.70
   2 !   15.4   0.0   1.5e-05    0.0011     166     245 ..     520     596 ..     514     616 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0044
    TIGR00955  40 llknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqddlf 110
                  ++k++s ++     + ++G  GaGK+T+  al   +  + +  g+++++G  ++a   + +r++ a v qd ++
  MMETSP1174-20130828|22166_1 371 VVKGISFHVPACSSVGIVGRTGAGKSTISLALL--RILEAQE-GSIVIDGVDIGAmglEDLRKNIAVVPQDPVL 441
                  5677777777778899***********855544..3333444.579****976542226778888888887654 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.5e-05
    TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrv 245
                   lS Ger+ l la  ll +  +L++DE T+  D  + a + kv+++   +  tv+++ H     +f  +d++++l+eG v
  MMETSP1174-20130828|22166_1 520 NLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRDEL-SNATVLTVAHRLGTIIF--YDRVLVLNEGYV 596
                  59*****************************************99743.34579999999999888..799999999977 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       3.1   2.3e+02      41      83 ..     373     415 ..     369     430 .. 0.78
   2 !   23.2   0.0   8.7e-08   6.4e-06     161     253 ..     517     606 ..     477     617 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 3.1
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlv 83 
                  +++s++v     + ++G +G+Gks++  a+ ++     G++ +
  MMETSP1174-20130828|22166_1 373 KGISFHVPACSSVGIVGRTGAGKSTISLALLRILEAQEGSIVI 415
                  566666777777778999*******988888877777777766 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 8.7e-08
    TIGR03415 161 kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkkl.kktivfvshdldealklGnriaimegGrivqlgtpeeiv 253
                    g+ls G +q + lara+  e  +l+mde  + +dP   a++q  +   +++l + t++ v+h l       +r+ ++++G ++ ++tp  ++
  MMETSP1174-20130828|22166_1 517 GGGNLSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVI---RDELsNATVLTVAHRLGTI-IFYDRVLVLNEGYVLEYDTPAALL 606
                  5678***************************************9754...34442789********865.57899**************98776 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.1       7.2   5.3e+02    1220    1267 ..     261     308 ..     248     311 .. 0.87
   2 ?   10.4   0.0   0.00025     0.019     210     290 ..     521     597 ..     517     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 7.2
    TIGR00956 1220 wlllilfflYvstlgllvislseladsAavlasllftlvllFcGvlat 1267
                   + l +l+ + ++t g ++  + +     a l++l++  + +Fc  +++
  MMETSP1174-20130828|22166_1  261 FRLNCLSAVVSGTTGAMIFFFGKEYGLTAALSGLILNYATSFCSYMTA 308 
                   4567888899999******************************98875 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00025
    TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqi 290
                  +s Ger+ + +a +l+ + +++++D+at  +D  t   + k+++   e+++at+l  ++     ++  +d+v+vl+eG+ +
  MMETSP1174-20130828|22166_1 521 LSVGERQLLCLARALLRENRVLVMDEATANVDPETDARIQKVIRD--ELSNATVLTVAHRLGTIIF--YDRVLVLNEGYVL 597
                  578999999999999999999999999999999999999999987..5678888888888777766..8999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 1.72u 0.22s 00:00:01.94 Elapsed: 00:00:00.91
# Mc/sec: 963.09
//
Query:       MMETSP1174-20130828|22170_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-17   58.9   7.7    1.3e-16   58.4   5.4    1.3  1  TIGR00893 2A0114: D-galactonate transporter
      4e-08   31.3   1.3      4e-08   31.3   0.9    3.0  3  TIGR00880 2_A_01_02: multidrug resistance protein
    2.9e-06   24.1   1.5    2.9e-06   24.1   1.0    2.8  3  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    2.9e-06   24.3   9.0    2.4e-05   21.2   1.1    2.3  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    0.00079   15.9   1.2    0.00079   15.9   0.8    2.4  3  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
     0.0074   13.2   2.5      0.012   12.5   0.0    2.0  2  TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter)
  ------ inclusion threshold ------
       0.42    7.3  12.9      0.012   12.4   0.3    2.8  3  TIGR00890 2A0111: oxalate/formate antiporter


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   5.4   2.2e-19   1.3e-16     110     390 ..       1     283 [.       1     293 [. 0.71

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 2.2e-19
    TIGR00893 110 WFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfv.gmvlggilsdlllk.kg.kslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl....aailwavisdvlskeiagltgGlinllG.nlagivgPivigaiaattGsfagallvvaalali 390
                  +FP++er ++ ++fn+a+++ga++g  + g++ ++ +W+++F+++G+++++++ + l + kd+++  + ++ +e  + + g+ ++   ++   +  a +k +  ++ +  +  g ++ n +l+++  wfp++ +  +g  + eagl+  +  +++ + g +lg   ++ l + ++   l++  ++ai +  +l+++l a++   s++ ++  ++++  g++      a + av  +++ +++ + + ++  ++   l+ +v  ++igai ++ G + ++l+v  +++l+
  MMETSP1174-20130828|22170_1   1 FFPPHERHIVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIPGLFVATVCLRL-KDPER--GSNDPAELMMDKAGGGSS-SARG-WASELADLKLICGNPYFRCVVGGLSANNFALGGLADWFPSFGFRYLGAGVAEAGLIVGVITVFAGIgGNILGMKTAQRLGSsWRsSFLSVPAAFAIPGAFLLAIALNAFGKGSSPWERMPAYVIVLCGEVCvwtfLAPISAVLINTMVPRCRARAQAVAIFFQhFLGDVVSMPLIGAISDANG-LRAGLQVTWVAILV 283
                  7*****************************************************99985.55555..455555555554444444.3333.457888999999******************************************9876666665550556666667666542554445555666666666666666677666666666666666655554421112233333334444455555555555555467777777899********.55566555555544 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.9   6.8e-11     4e-08      80     135 ..       2      57 ..       1      62 [. 0.91
   2 ?   -0.9   0.7      0.61   3.6e+02      93     123 ..     144     176 ..     134     194 .. 0.59
   3 ?   -0.0   0.5      0.32   1.9e+02      98     119 ..     252     273 ..     206     296 .. 0.51

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 6.8e-11
    TIGR00880  80 ikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilll 135
                  ++++er  ++g+++++i +g+ lG ++G+v+++ +gwr+ f++ ++  l+++ + l
  MMETSP1174-20130828|22170_1   2 FPPHERHIVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIPGLFVATVCL 57 
                  899******************************************99998876665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.61
    TIGR00880  93 sagialgpilGpllGavlaqalg..wralflil 123
                   ++++++ i G +lG   aq lg  wr  fl +
  MMETSP1174-20130828|22170_1 144 GVITVFAGIGGNILGMKTAQRLGssWRSSFLSV 176
                  455667777888888777766541256565543 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.32
    TIGR00880  98 lgpilGpllGavlaqalgwral 119
                  lg +++ +l +++ +a g ra 
  MMETSP1174-20130828|22170_1 252 LGDVVSMPLIGAISDANGLRAG 273
                  3333333333333333344333 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.0     5e-09   2.9e-06     119     175 ..       2      58 ..       1      74 [. 0.93
   2 ?   -0.0   1.7       0.1        60     279     397 ..     125     253 ..     120     264 .. 0.62
   3 ?    2.3   0.1      0.02        12     302     334 ..     252     284 ..     242     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5e-09
    TIGR00711 119 yppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvall 175
                  +pp++r ++ +++ la+ v+ +lG ++gG +  +  Wr  F++  ++G++v +v l 
  MMETSP1174-20130828|22170_1   2 FPPHERHIVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIPGLFVATVCLR 58 
                  9**************************************************998764 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.1
    TIGR00711 279 PlylqqvlgytalqaGlailpvglaalllsPiaGr.ladkidlr...llvliglilyavglyliavk...lepdtdfleillkllirglg...lsllfmPlttialkkLpaekvaagssLinllrqlgG 397
                  P++ ++ lg    +aGl + +  ++a +   i G+  a++++       + +     + g +l a+    + + +  +e ++ ++i   g   +  +++P++ + ++++ ++  a++ ++  + ++  G
  MMETSP1174-20130828|22170_1 125 PSFGFRYLGAGVAEAGLIVGVITVFAGIGGNILGMkTAQRLGSSwrsSFLSVPAAFAIPGAFLLAIAlnaFGKGSSPWERMPAYVIVLCGevcVWTFLAPISAVLINTMVPRCRARAQAVAIFFQHFLG 253
                  556666666666677777777777777777777766666665431112333333333444444444400045677778888887776544111666899999999999999999999988777665444 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.02
    TIGR00711 302 laalllsPiaGrladkidlrllvliglilyavg 334
                  l  ++++P++G+++d  +lr  + ++ + ++v+
  MMETSP1174-20130828|22170_1 252 LGDVVSMPLIGAISDANGLRAGLQVTWVAILVS 284
                  67799***************9988887766653 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.1   4.1e-08   2.4e-05     134     190 ..       2      57 ..       1      64 [. 0.83
   2 !    7.1   0.7   0.00084      0.49     259     329 ..     110     182 ..     102     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.1e-08
    TIGR00895 134 apkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllik 190
                   p   r  v g++ +  ++Gaa+g ++++++ +++gWr+ f+v gi  l+++ +   
  MMETSP1174-20130828|22170_1   2 FPPHERHIVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIPGLFVATV-CL 57 
                  6778899999**********************************9655655554.44 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00084
    TIGR00895 259 yflllvvvYlltsWlP.kLlveagasl.skaalllvllnvGgvlgslllgaladrlgpkvlalllllaavfav 329
                   +++++++ +l+ W P +  + +ga + + +++++v++ ++g+ g +l    a+rlg+    ++l + a fa+
  MMETSP1174-20130828|22170_1 110 LSANNFALGGLADWFPsFGFRYLGAGVaEAGLIVGVITVFAGIGGNILGMKTAQRLGSSWRSSFLSVPAAFAI 182
                  5677788888999***76778888776155678999**********************977777777777766 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.8   1.3e-06   0.00079     160     223 ..       2      62 ..       1      67 [. 0.83
   2 ?   -3.0   0.1      0.71   4.1e+02     395     418 ..     140     159 ..     109     194 .. 0.56
   3 !    4.5   0.2    0.0037       2.2     152     226 ..     226     307 ..     206     326 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.3e-06
    TIGR00894 160 iPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddP 223
                  +PP+ER  + ++      +G+++ + i+G++     gW + f+++gi g    ++ + l   dP
  MMETSP1174-20130828|22170_1   2 FPPHERHIVFGVFNLAIPVGAALGFVIGGVVGAT-WGWRVAFFVCGIPGLF--VATVCLRLKDP 62 
                  8**********99999************998766.7***********9954..44555555555 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.71
    TIGR00894 395 giikgvttligslaglissllvgq 418
                  g+i gv t+ + ++g i     g 
  MMETSP1174-20130828|22170_1 140 GLIVGVITVFAGIGGNI----LGM 159
                  33333333333333322....222 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0037
    TIGR00894 152 qhellakWiP.PkERsrlvsavlsGaqlGtlivlpisGlicesd.....lgWpavfYifgivgtvvlilwl..vlvyddPseH 226
                  + +l+   +P  + R+++v++ +    lG ++++p+ G i + +     l   +v  +++ +  ++  l+l  +lv+ +  +H
  MMETSP1174-20130828|22170_1 226 SAVLINTMVPrCRARAQAVAIFFQ-HFLGDVVSMPLIGAISDANglragLQVTWVAILVSGCCWAWGALYLppLLVAKSKDDH 307
                  444554444422345666666666.889**************99888554444444455555555555554445555555555 PP

>> TIGR00924  yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     2e-05     0.012     141     183 ..       9      52 ..       4      81 .. 0.87
   2 ?   -0.0   0.4      0.12        73     362     425 ..     185     250 ..     164     284 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2e-05
    TIGR00924 141 ggftvfymainiGaliaplligviaenvgyhlgfalaav.Glal 183
                    f vf +ai +Ga ++ ++ gv++   g+ ++f ++++ Gl +
  MMETSP1174-20130828|22170_1   9 IVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIpGLFV 52 
                  579**********************************9855544 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.12
    TIGR00924 362 sfltfvaslgfaeagtkaaaaflvliylvqtlGeL....mispvgLsvstkiaPq.klksqilglwfLa 425
                  +fl+++a   +   g+  +++  +  y++  +Ge+     ++p++  +   ++P  + ++q ++++f  
  MMETSP1174-20130828|22170_1 185 AFLLAIA---LNAFGKGSSPWERMPAYVIVLCGEVcvwtFLAPISAVLINTMVPRcRARAQAVAIFFQH 250
                  5666666...33334444444444555555566652222467787777777888536677888877643 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3     2e-05     0.012     325     370 ..       3      48 ..       1      55 [. 0.87
   2 ?   -2.2   1.2      0.54   3.1e+02     317     350 ..     125     160 ..     110     198 .. 0.50
   3 ?    3.4   0.1     0.011       6.7      13      73 ..     218     276 ..     202     293 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
    TIGR00890 325 gkknsaanyGllytakavagilggliaslvlteiGfeatllvtaal 370
                   ++     +G++ +a  v++ lg +i+++v +  G++++++v+++ 
  MMETSP1174-20130828|22170_1   3 PPHERHIVFGVFNLAIPVGAALGFVIGGVVGATWGWRVAFFVCGIP 48 
                  555666789**********************************985 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.54
    TIGR00890 317 pslvskifgk..knsaanyGllytakavagilggli 350
                  ps   ++ g   + ++   G++ +  +++g + g+ 
  MMETSP1174-20130828|22170_1 125 PSFGFRYLGAgvAEAGLIVGVITVFAGIGGNILGMK 160
                  555444443211333334444444444444333333 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.011
    TIGR00890  13 alvsgivYtwtllapalgrklrvkvtavaiaftlllivlalsqvvgGkladkfGpravall 73 
                  + +++   +  l + + +   r+  +avai f+   ++  +s++  G++ d  G ra+  +
  MMETSP1174-20130828|22170_1 218 VWTFLAPISAVLINTM-VPRCRARAQAVAIFFQH-FLGDVVSMPLIGAISDANGLRAGLQV 276
                  3344444443333333.33456667788888875.6799***************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1147.73
//
Query:       MMETSP1174-20130828|22174_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1174-20130828|22173_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 2059.03
//
Query:       MMETSP1174-20130828|22176_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 228.44
//
Query:       MMETSP1174-20130828|22179_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   28.8  24.3    7.7e-07   26.6  16.9    1.9  1  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI


Domain annotation for each model (and alignments):
>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  16.9   1.9e-10   7.7e-07      43     328 ..      68     378 ..      60     389 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.9e-10
    TIGR02872  43 Lekklklkralavlivlllfliiivllltilvtelvkelialakklpqylsei..............keaikkllkeleslleslpeevqktikenietlle.....klanqvaelakklitsilsflaai....PeflivllvtLiatfliskdlprlkeklfsllpervsqklkkilselkkalvgflka...qlilvlitfvivligLlllkveyalllalliaivDilPilGtgavlvPwalvllitgnlalaigllilylvv.lilRqilEpKvlsssiGldpLatLislyiGlkllGvlGlivgpvv 328
                  L +klkl+r++  +  ++ +++ i ++ +++v  +++++ +l+k +                     ++++ ++lk+++s+ +  p e   ++ ++ ++ ++     +la  +++++k+ + s+++f +++     +fl  ++v+L+  f++ +dlp++k+ ++sl +++ +   + ++ +++  +     a   q+ +  + +v++++gL++lk+  + +l+l++ i  ++P +G+ +  +P  ++ l +  +   i +  +   v  +   +l p+  +ss  +  L ++  ly+  +l+G+ Gl+++  v
  MMETSP1174-20130828|22179_1  68 LPEKLKLPRKVIAFLYMVALITGIATVTVVVVPGVIQQGQYLVKVIESDDPYLlvsrtlthsfgsdvTNKLVPFLKSVSSFDT--PSENGLNVLKSGRSWASsagevELAAALQKILKENAMSLVKFCSKLyqlsTSFLYKFFVSLLFSFFLILDLPNIKKSVRSLRNSKLAFPYSVLAPDVSGFAEVVGDAtviQIQIAAVNTVLTMLGLIFLKIPAVGVLSLIVFICSFIPAIGILLSTLPMLVIALNEYGMQKLISVFFMIFWVhAVEAYLLYPRLYASSFKIPTLLVITVLYMTEHLVGLQGLFLALPV 378
                  6789*******99999999***9********************9997654444555689999996663333333333333322..2222233333333222211111455566667777777777777766222246788999**************************999999999988875444444441115567778899**************************************99998877666666766655544504556799********************************997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1434.04
//
Query:       MMETSP1174-20130828|22177_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-17   60.0   0.0    4.7e-17   60.0   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.6e-10   38.6  30.1    7.1e-10   36.5  20.8    2.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.7e-09   34.2   0.1    2.7e-09   34.2   0.1    2.6  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    6.5e-09   32.6   0.9    4.5e-08   29.8   0.0    2.3  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.7e-08   31.6   0.0    2.7e-08   31.6   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.3e-07   26.7   0.0    2.2e-06   25.4   0.0    1.7  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.2e-06   24.0   0.2    3.2e-06   24.0   0.1    1.8  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0026   14.6   0.0     0.0026   14.6   0.0    2.0  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
  ------ inclusion threshold ------
       0.48    7.4   7.0       0.59    7.1   0.0    2.1  2  TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0     1e-19   4.7e-17     221     300 ..       5      84 ..       1      93 [. 0.93
   2 ?   -2.8   4.0       1.1   5.1e+02     327     368 ..     250     290 ..     220     331 .. 0.44

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 1e-19
    TIGR01622 221 kLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                   ++vGn+ +  t+++Lr iF   G++++v++  ++ t + kGyGF++F+d+e+ k+A+  + G  + GRe++v ++++++
  MMETSP1174-20130828|22177_1   5 DVFVGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEKSTDKPKGYGFVEFEDSETVKNAILLMDGRIVNGREMRVKYSHNSQ 84 
                  679**********************************************************************9977654 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
    TIGR01622 327 teereqldekldrddekgsgalaiagtdskavqmaklsrdgl 368
                  +++r+  +++l++ + +    l+ ++++++ +q ++l+++  
  MMETSP1174-20130828|22177_1 250 AQQRQIQQQQLQQRQLQQQ-QLQQQQLQQQQLQQQQLQQQLQ 290
                  2222222222222211111.1222222222222222222111 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  20.8   1.6e-12   7.1e-10     286     519 ..       4     303 ..       1     331 [. 0.52

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.6e-12
    TIGR01628 286 vNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf..........................................mqasaesrqlsigspvigaan........isgrh....qaaqqqavvtqavkqqlasqplnfkinqmmlstqnps..kpea............pnalaqlaqqrlqaqgr..rnlnnrnrnv.lgnmnkkqqnaaskanqanvkaqpq..aqskn...qmqqvvqdnnlpqkqatksn 519
                  + ++v N++ + +d +Lr  F+e+G++ S++++++  ++k kg+GFV f + e  ++A+  ++g+i+ng+ + v + +  +    +  ++                                           +         ++++  +++ +        ++ r+    q a+q ++ +  +++  ++ p+   +++  + +q                     p++   +a+ +   q+r  +  ++r+ ++ ++++ + qq++ ++++ ++ + q+q  +q++    q+qq  q ++l+q+q+++s+
  MMETSP1174-20130828|22177_1   4 NDVFVGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEkSTDKPKGYGFVEFEDSETVKNAILLMDGRIVNGREMRVKYSHNSQMTEPEPMKMGspppvpihevvnnsfskgdmydmvlqtkrmaennpglvrnllK---------AYPKLAVAMLHmqvtigmqPPPRPkssaQLAPQIPLIQSVPSMIQRQFPIAAVVQNSLPRHQLHRgaD--IgngiysirgslnPTMASGMAAGGIGVQQRldHISQQRQAEIlMAQQRQIQQQQLQQRQLQQQQLQQQqlQQQQLqqqQLQQQLQLQQLQQQQQSVSQ 303
                  6789***************************999867899***********************************99876655544444447889999999999999999888777665555444444433320.........22222222222111111111111111012223333333333333333333333222222222222220..12223333333334433333333322222222333333333312222222333333333333222222212221101123333333334444444433 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   5.9e-12   2.7e-09     110     183 ..       8      82 ..       4     107 .. 0.90
   2 ?  -29.9  29.7         9   4.1e+03      52     103 ..     236     289 ..     218     306 .. 0.62

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.9e-12
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgrPsn 183
                  vG i +   +d+lr  f+  G + s+ m  +  t k kg+ fve e  e+ + a   m+g ++ Gr+++v   +n
  MMETSP1174-20130828|22177_1   8 VGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEKSTDKPKGYGFVEfEDSETVKNAILLMDGRIVNGREMRVKYSHN 82 
                  9*********************************************************************95544 PP

  == domain 2    score: -29.9 bits;  conditional E-value: 9
    TIGR01645  52 lsklsserkddiqkakk..ameqsikqvllkqtlahqkqqlenqqrq.vqrqqal 103
                  l ++s +r+ +i +a++    +q ++q  l+q    q+qql++qq q  q qq l
  MMETSP1174-20130828|22177_1 236 LDHISQQRQAEILMAQQrqIQQQQLQQRQLQQQ-QLQQQQLQQQQLQqQQLQQQL 289
                  788999999999999875344556666555552.333333333333212445544 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.9e-11   4.5e-08     296     374 ..       3      81 ..       1     124 [. 0.90
   2 ?   -0.5   1.1      0.16        71      38      71 ..     266     283 ..     233     354 .. 0.42

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 9.9e-11
    TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAt 374
                  ++ +++gn+ +  +dd ++ +  + G +++  ++ +  t + KGy+F+e++ds   + Ai  ++G  + ++ + vk   
  MMETSP1174-20130828|22177_1   3 KNDVFVGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEKSTDKPKGYGFVEFEDSETVKNAILLMDGRIVNGREMRVKYSH 81 
                  7889*********************************************************************999754 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.16
    TIGR01642  38 drrdrrrsrrkdsRdRdrrrydsrsissleeds...r 71 
                  +++                   + ++++l++++   +
  MMETSP1174-20130828|22177_1 266 QQQ-------------------QLQQQQLQQQQlqqQ 283
                  111...................111111111111110 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   5.9e-11   2.7e-08     272     347 ..       6      82 ..       2      87 .. 0.61
   2 ?   -1.3   3.4      0.58   2.7e+02     174     245 ..     243     311 ..     214     342 .. 0.58

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 5.9e-11
    TIGR01661 272 ifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktn 347
                  +fv n+   t + +l  +f++ G v sv+++ + +t+k kGygfv   + +   +ail ++G  + +r ++v +  n
  MMETSP1174-20130828|22177_1   6 VFVGNIEYGTTDDMLrIIFSEIGKVLSVRMVIEKSTDKPKGYGFVEFEDSETVKNAILLMDGRIVNGREMRVKYSHN 82 
                  56666665555555534566666666666666666666666666666666666666666666666666666665554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.58
    TIGR01661 174 snskallsdleavlnaqltrvprstiltaaaiaplhka.aakfrlsaldflavlakrlqqhavaqqaaaqras 245
                  ++ ++l+++  +++++ql +  r +  +  ++  l+++ +++ +l++   l+ l  ++qq++v+qq+    +s
  MMETSP1174-20130828|22177_1 243 RQAEILMAQQRQIQQQQLQQ--RQLQQQQLQQQQLQQQqLQQQQLQQQLQLQQL--QQQQQSVSQQRHGLDVS 311
                  44455666666666665555..32233333333333222444444444444444..55566666665554444 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   4.8e-09   2.2e-06     195     262 ..       5      72 ..       2      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 4.8e-09
    TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                  +++v n+    tdd l  if   g+++   ++ +k t kp+g  fv f+  e  ++ai  ++  i +g
  MMETSP1174-20130828|22177_1   5 DVFVGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEKSTDKPKGYGFVEFEDSETVKNAILLMDGRIVNG 72 
                  689*******************************************************8888777666 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   7.1e-09   3.2e-06      60     135 ..       5      80 ..       2      85 .. 0.90
   2 ?   -3.1   1.6       1.2   5.4e+02     455     522 ..     249     316 ..     195     368 .. 0.53

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 7.1e-09
    TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcis 135
                  +vfvG i     +d l  +f ++Gk+  +r++++    k +Gy fv f + e  k+a+  ++   i +Gr + v  s
  MMETSP1174-20130828|22177_1   5 DVFVGNIEYGTTDDMLRIIFSEIGKVLSVRMVIEkSTDKPKGYGFVEFEDSETVKNAILLMDG-RIVNGREMRVKYS 80 
                  79********************************667789******************98886.6889998887665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.2
    TIGR01648 455 iedgriltlekiiipaavsqdpaiaalappkasaavreakstpaeyqlrtlgvrtsagnqriatagak 522
                  + ++r+   +++    + +q+   + l   ++     + + +  + q++  +v  ++    ++  ga 
  MMETSP1174-20130828|22177_1 249 MAQQRQIQQQQLQQRQLQQQQLQQQQLQQQQLQQQQLQQQLQLQQLQQQQQSVSQQRHGLDVSHSGAV 316
                  34444444444444444444444444444444433333333444444444443333333333333333 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.7e-06    0.0026     311     377 ..      15      86 ..       3      98 .. 0.66
   2 ?   -4.3   2.5       3.2   1.4e+03     356     377 ..     265     286 ..     236     332 .. 0.52

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.7e-06
    TIGR01649 311 vtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrvavSkqeavq 377
                   t d+l ++f+  G v  v+++ +k     k+ ++ve+ d + +++a+  +d+  + g+++rv+ S+++ ++
  MMETSP1174-20130828|22177_1  15 TTDDMLRIIFSEIGKVLSVRMVIEKstdkpKGYGFVEFEDSETVKNAILLMDGRIVNGREMRVKYSHNSQMT 86 
                  355677777777777777777766533333456777777777777777777777777777777777776655 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 3.2
    TIGR01649 356 LdkvklfgkklrvavSkqeavq 377
                  L++++l  ++l+    +q+ +q
  MMETSP1174-20130828|22177_1 265 LQQQQLQQQQLQQQQLQQQQLQ 286
                  2222222222222222222211 PP

>> TIGR01728  SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0013      0.59     176     211 ..     106     141 ..      99     147 .. 0.84
   2 ?   -0.6   3.9       0.3   1.4e+02     223     263 ..     245     285 ..     238     300 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0013
    TIGR01728 176 aesiflkevpsllvvreefieehpeqVekllkvlvk 211
                  ++s+  ++++++++ +++++e++p  V +llk++ k
  MMETSP1174-20130828|22177_1 106 NNSFSKGDMYDMVLQTKRMAENNPGLVRNLLKAYPK 141
                  45666666************************9866 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.3
    TIGR01728 223 saeilakelkvsqeeveeevlkkkflrvevivdeevdalqa 263
                  ++ ++a++ +++q+++++ +l++++l+ + + ++  + +q 
  MMETSP1174-20130828|22177_1 245 AEILMAQQRQIQQQQLQQRQLQQQQLQQQQLQQQQLQQQQL 285
                  45568888889999999999999999999999888776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       828  (0.201853); expected 82.0 (0.02)
Passed bias filter:                      236  (0.0575329); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 1053.16
//
Query:       MMETSP1174-20130828|22180_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1174-20130828|22182_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 387.72
//
Query:       MMETSP1174-20130828|22184_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 669.37
//
Query:       MMETSP1174-20130828|22189_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1139.51
//
Query:       MMETSP1174-20130828|22186_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   14.1   0.0        2.6    5.9   0.0    3.7  4  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0064        26      48      80 ..     125     158 ..     111     161 .. 0.79
   2 ?   -3.2   0.1      0.43   1.8e+03      12      24 ..     346     358 ..     343     379 .. 0.49
   3 ?   -0.6   0.1     0.069   2.8e+02       6      23 ..     390     407 ..     385     418 .. 0.55
   4 !    5.9   0.0   0.00062       2.6       3      51 ..     431     477 ..     430     481 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0064
    TIGR02209  48 ndLqlEvaelsrheRiekiAkkqL.gmklpdanq 80 
                  +  q+Ev  ++++ R++++A++   gm+++ +++
  MMETSP1174-20130828|22186_1 125 SVIQVEVPHNGEPVRVRDVANSLSyGMDVNRYKV 158
                  55799***************98534888887776 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.43
    TIGR02209  12 vlvsaisvvsvqh 24 
                   lv+ +s+v v+ 
  MMETSP1174-20130828|22186_1 346 TLVVLMSLVDVAF 358
                  3444444443333 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.069
    TIGR02209   6 vlllllvlvsaisvvsvq 23 
                  + l+l vlvs  + v++ 
  MMETSP1174-20130828|22186_1 390 TVLILSVLVSMAYAVYTM 407
                  445555555555555543 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.00062
    TIGR02209   3 klyvlllllvlvsaisvvsvqhqtrqlnselqklqaeieklqkewndLq 51 
                  +ly+l+l++++++ +   s+++q +   +el++++   +++++e +++ 
  MMETSP1174-20130828|22186_1 431 VLYLLILMAICILWM--PSSNSQRYAYSMELATFDPDDDDEDNEGENMD 477
                  677777777776655..57888888889999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1529.87
//
Query:       MMETSP1174-20130828|22190_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.2    5.0  13.8         12    4.2   9.6    1.6  1  TIGR02300 FYDLN_acid: TIGR02300 family protein


Domain annotation for each model (and alignments):
>> TIGR02300  FYDLN_acid: TIGR02300 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.6     0.003        12      91     126 ..      59      91 ..       1      94 [. 0.68

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.003
    TIGR02300  91 gddlaededledddddvtfledeedddedvediiGv 126
                  gddl      +ddddd   +++ +ddd+dv  i G 
  MMETSP1174-20130828|22190_1  59 GDDL-LSLCFDDDDDD--VMDNHDDDDDDVMHITGT 91 
                  6777.66677888888..788888899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 442.80
//
Query:       MMETSP1174-20130828|22191_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 620.84
//
Query:       MMETSP1174-20130828|22192_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|22193_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|22194_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1174-20130828|22200_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 271.74
//
Query:       MMETSP1174-20130828|22201_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.8    2.3  11.7         11    2.1   8.1    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   8.1    0.0026        11     323     392 ..      28      95 ..       4     128 .. 0.35

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0026
    TIGR02442 323 ekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkif 392
                  ++k+++++++ ++++ +++  ++++++ +k++++++  k de+  d++e+ ++e+ +  +      + ++
  MMETSP1174-20130828|22201_1  28 PNKKDKSSSQSSSESVSPKSTDDSKNSGDKSTDSNKASKSDEETGDTSEDSNSESDD--SLINRDVDITV 95 
                  222222222222222222222112222222222222222333333333332222221..11222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1174-20130828|22203_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 955.60
//
Query:       MMETSP1174-20130828|22204_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.0   0.0      0.016   11.9   0.0    1.0  1  TIGR03428 ureacarb_perm: permease, urea carboxylase system


Domain annotation for each model (and alignments):
>> TIGR03428  ureacarb_perm: permease, urea carboxylase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-06     0.016     205     247 ..       8      50 ..       2      53 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-06
    TIGR03428 205 taassgavgaflvsglmaayvmvgfdsagelaeetknprkvap 247
                  + +++   + f+vsg+  a v++g    g+  +++ npr   p
  MMETSP1174-20130828|22204_1   8 AETDASLHWLFFVSGIRLAAVIIGTAKQGDSQNNAWNPRPRGP 50 
                  55677889*******************************8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|22202_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.56
# Mc/sec: 1694.65
//
Query:       MMETSP1174-20130828|22205_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|22206_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.40
# Mc/sec: 125.39
//
Query:       MMETSP1174-20130828|22209_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 209.83
//
Query:       MMETSP1174-20130828|22210_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1174-20130828|22215_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 679.36
//
Query:       MMETSP1174-20130828|22208_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-196  650.4   0.0   2.2e-195  648.1   0.0    1.8  1  TIGR00337 PyrG: CTP synthase
    3.2e-06   24.5   0.1    1.1e-05   22.8   0.0    1.8  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    0.00061   16.7   0.0     0.0013   15.5   0.0    1.6  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
     0.0021   15.7   0.2     0.0047   14.6   0.0    1.6  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
     0.0032   13.6   0.0     0.0047   13.1   0.0    1.1  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
     0.0046   14.6   0.0      0.034   11.8   0.0    2.1  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  648.1   0.0  3.2e-198  2.2e-195      36     526 .]       2     541 ..       1     541 [. 0.96

  Alignments for each domain:
  == domain 1    score: 648.1 bits;  conditional E-value: 3.2e-198
    TIGR00337  36 vtiikidpylnidaGtlsPlehGevfvlddGaetdldlGhyerfldteltkennittGkiyskvlekerkGdylGktvqviPhitdeikdrikrvak.......seadvviveiGGtvGdieslpfleairqlkkevgkenvlfihvtlvPyi.kaagelktkPtqhsvkelrslGiqPdiiicrseeelkkelkekialfcdveeeavieakdvesiyevPlllkkeklddlllkrlkleek...............................eadlseweelveklaeskeevkialvGkyvelkdaylsvkealkhaalkldlkvnikwidsedleeee...aelleevdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefarnvlglkeanstefdee...tkepvvallpeqkdkedlGgtmrlGayevklkeeslakklygkeevkerhrhryevnnelleeleekGlivsgksedgklveiielkd.....hpffvatqfhPefksrveepsklflglvka 526
                  vt++kidpyln+daGt+sP+ehGe+fvlddG+etdldlG+yerfl + l +++n+ttGkiy+kv+eker+G+ylGktvq+iPhit+ei  ri+ va        + +d+++ve+GGt+Gdies+pf+ea+rql+++ g  n+ ++hv++vP++    ge ktkPtqhsvkelrslG+ Pd i+crs+ +++  ++ekialfc+v+ e v+++ dv +iy+vP+ +  ++ld l++++l++++                                +    +w+++v++++  ++ev ialvGky+   d+ylsv+ +l+ha++++d+++++  idse + + +     +l ++ +ilvPGGfG+rG+ Gk+  i+yare+k+PflGiclG+q+a+iefarnvl++++a s+efd+    t ++ + ++pe + k+++GgtmrlG++ ++l+e+sla++lyg+ +++erhrhryevn+ l+ +le kGl++sg +++g ++e++el+d     hpff++ q hPe+ksr+ +ps++flgl++a
  MMETSP1174-20130828|22208_1   2 VTAVKIDPYLNVDAGTMSPFEHGECFVLDDGGETDLDLGNYERFLAVMLGSDSNLTTGKIYRKVIEKERRGEYLGKTVQIIPHITNEIMARIEAVATlpvdgsqEPPDICMVELGGTIGDIESMPFVEALRQLQHKAGPRNFCLVHVSMVPTVgPEPGEHKTKPTQHSVKELRSLGLAPDFIVCRSKDRVSMPTREKIALFCNVPAERVLSLYDVPNIYRVPIEMLDRNLDILISEQLNIRTYrgddddmsekdspdwtkkntamtsalklrsdSGFTHKWKDMVQRMEGAQNEVVIALVGKYMAQADSYLSVQSSLHHACIANDCRLKLVRIDSELIGSGDeasWAMLRSAHAILVPGGFGDRGTAGKVAVIQYAREQKVPFLGICLGMQLAIIEFARNVLNITGATSSEFDPTavgTAKEAIIFMPEGS-KDEMGGTMRLGSRATTLSEGSLAHRLYGSLTIHERHRHRYEVNPALVPKLEAKGLRFSGVDDTGMRAEVVELDDtspdgHPFFFGLQAHPEYKSRPLQPSPPFLGLIRA 541
                  99**********************************************************************************************99999987779********************************************9834579***********************************************************************************9999************************99986556789********************************************************998766444678888**************************************************************972224566999****98.99**********************************************************************86555669***************************97 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.6e-08   1.1e-05      17     113 ..     328     427 ..     319     436 .. 0.84
   2 ?   -1.8   0.1      0.55   3.7e+02     158     167 ..     515     524 ..     510     527 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.6e-08
    TIGR00888  17 rlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgev...eraekreygkaelevldedelf 113
                  rl+ +++ sel+    +++    +++++i++ Gg     + +   v ++  e +vP lGiC+Gmql    +  +v   + a ++e+  + +   +e  +f
  MMETSP1174-20130828|22208_1 328 RLKLVRIDSELIGSGDEASWAMLRSAHAILVPGGFGDRGTAGKVAVIQYAREQKVPFLGICLGMQLAIIEFARNVlniTGATSSEFDPTAVGTAKEAIIF 427
                  6788889999998887777777778899********99999*************************9999988762224578889999888888877776 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.55
    TIGR00888 158 lyGvqfhPev 167
                  ++G+q hPe 
  MMETSP1174-20130828|22208_1 515 FFGLQAHPEY 524
                  79******95 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     2e-06    0.0013     215     259 ..     351     394 ..     216     405 .. 0.84
   2 ?   -2.8   0.0      0.72   4.9e+02     320     345 ..     507     528 ..     470     538 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2e-06
    TIGR01368 215 lnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqll 259
                   + ++il+  G Gd  ++   ++ ++ + e+k+P++GIclG ql 
  MMETSP1174-20130828|22208_1 351 RSAHAILVPGGFGDRGTA-GKVAVIQYAREQKVPFLGICLGMQLA 394
                  344799999****97655.567889999999************85 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.72
    TIGR01368 320 gtveglehkelpvfsvQyHPeaspGp 345
                  ++ +g    +  +f +Q HPe ++ p
  MMETSP1174-20130828|22208_1 507 TSPDG----HPFFFGLQAHPEYKSRP 528
                  44444....33578999999988776 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.9e-06    0.0047      62      84 ..     373     394 ..     348     407 .. 0.80
   2 ?   -3.8   0.0         3     2e+03     175     183 ..     516     524 ..     515     527 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.9e-06
    TIGR01855  62 llaekvvkkkkpvlgiClGmQll 84 
                  ++ + ++++k p+lgiClGmQl 
  MMETSP1174-20130828|22208_1 373 VI-QYAREQKVPFLGICLGMQLA 394
                  33.67789999**********95 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3
    TIGR01855 175 vgvQFHPEk 183
                  +g+Q HPE 
  MMETSP1174-20130828|22208_1 516 FGLQAHPEY 524
                  89*****94 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.8e-06    0.0047      30      98 ..     326     393 ..     306     406 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.8e-06
    TIGR01823  30 dvrvsvitvhsDkld...ddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqs 98 
                  d r + + ++s+ +    +  + +l+   ai v  G Gd  +a +v++++   e     +vP lGiCLG+q 
  MMETSP1174-20130828|22208_1 326 DCRLKLVRIDSELIGsgdEASWAMLRSAHAILVPGGFGDRGTAGKVAVIQYAREQ----KVPFLGICLGMQL 393
                  666777778887765443678999**********************999865555....5**********95 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.21   1.5e+02     153     185 ..      85     119 ..      43     121 .. 0.71
   2 !   11.8   0.0   4.9e-05     0.034      43      91 ..     351     398 ..     309     412 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.21
    TIGR00566 153 eeieima.i.rhrdlpleGvqfhPesilselGkel 185
                   ++eima i     lp+ G q  P+ ++ elG+++
  MMETSP1174-20130828|22208_1  85 ITNEIMArIeAVATLPVDGSQEPPDICMVELGGTI 119
                  3467887331245799**************99875 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.9e-05
    TIGR00566  43 lpllsivisPGPctPdeaaissleliehl.aGklPilGvClGhqalaqaf 91 
                   + ++i++  G +    a+   +++i+ +   k+P lG+ClG q     f
  MMETSP1174-20130828|22208_1 351 RSAHAILVPGGFGDRGTAG--KVAVIQYArEQKVPFLGICLGMQLAIIEF 398
                  4555555554544444444..4688887625799*********9655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.48
# Mc/sec: 1504.13
//
Query:       MMETSP1174-20130828|22216_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|22223_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 637.19
//
Query:       MMETSP1174-20130828|22220_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1698.49
//
Query:       MMETSP1174-20130828|22224_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1497.25
//
Query:       MMETSP1174-20130828|22227_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1171.90
//
Query:       MMETSP1174-20130828|22228_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1323.89
//
Query:       MMETSP1174-20130828|22234_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1174-20130828|22230_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1084.95
//
Query:       MMETSP1174-20130828|22232_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.47
# Mc/sec: 1805.72
//
Query:       MMETSP1174-20130828|22239_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|22236_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.5   4.7    2.7e-11   41.3   3.2    1.6  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.3e-10   38.2   0.1    1.7e-10   37.8   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0001   18.1   0.1    0.00015   17.6   0.1    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00042   17.8   0.0    0.00093   16.6   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   3.2   2.6e-14   2.7e-11       2      72 ..     141     207 ..     140     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 2.6e-14
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleg 72 
                  +Y +L++ +d +e+e+k+  r+++ +yHPD+      + e f+++n+A +vLsd+++r+ YD+ g +  ++
  MMETSP1174-20130828|22236_1 141 HYTVLELCHDFNEQELKQNVRQKVLQYHPDKPG---GSIEIFQRVNDASDVLSDPKRRRLYDE-GDDIPRD 207
                  7*****************************999...67899*********************9.6665554 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   1.6e-13   1.7e-10       4      65 ..     141     200 ..     139     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.6e-13
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65 
                  +y vL++  D +eqe+k+  r+   +yhPD+     + +if+ +n+a dvLs+Pk+r  yD 
  MMETSP1174-20130828|22236_1 141 HYTVLELCHDFNEQELKQNVRQKVLQYHPDKP--GGSIEIFQRVNDASDVLSDPKRRRLYDE 200
                  69****************************65..67899*********************95 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.4e-07   0.00015     123     200 ..      29     108 ..       6     128 .. 0.59

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-07
    TIGR02917 123 eaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadp..knvdAllLkg 200
                  + a l   +g  + + ++++eA+++le+Ala  p++  a l lA l+l  ++ + a   + + L +d   +  d +l+++
  MMETSP1174-20130828|22236_1  29 DEALLRWHKGCCHRRARQFKEAKQELETALARFPSFVLALLELAALLLDFGDPQAALVYLKQLLRIDRslPGLDTWLVRA 108
                  44445555555556666666666666666666666666666666666666666666666666665543113455555554 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.1e-07   0.00093     141     195 ..      37      91 ..      35     123 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.1e-07
    TIGR02521 141 aglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeArallery 195
                  +g c ++a ++++a++ l+ al+  p+   +llela l l+ g+ ++A  +l++ 
  MMETSP1174-20130828|22236_1  37 KGCCHRRARQFKEAKQELETALARFPSFVLALLELAALLLDFGDPQAALVYLKQL 91 
                  599*********************************************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1279.56
//
Query:       MMETSP1174-20130828|22238_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 668.74
//
Query:       MMETSP1174-20130828|22241_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|22240_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-67  223.1   0.0    7.2e-67  222.9   0.0    1.0  1  TIGR01091 upp: uracil phosphoribosyltransferase
    2.5e-05   21.2   0.0    3.5e-05   20.7   0.0    1.1  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase


Domain annotation for each model (and alignments):
>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.9   0.0   3.5e-70   7.2e-67       4     206 ..       7     208 ..       4     209 .. 0.97

  Alignments for each domain:
  == domain 1    score: 222.9 bits;  conditional E-value: 3.5e-70
    TIGR01091   4 viehpLikhkltvlRdketetkefrellkelgsllayeatkdleleevevetplgeakakelkdkkvvlvpiLrAglglvegvlkllpeakvglvglkRdeetlkievyysklpedieerevivlDPmlAtGgtvvealellkekgakkikvlsivaapeglekvekahpdveiyvaaidekLnekgYIvPGLGDaGDrafgt 206
                  v +hp+  hk+t++R++et++ efr+ll+e++  + yeat++l++e+ e+ tp+g+ ++ +++ +++++vpiLrAglg+v+ +l++lp+a+v ++g++R++ +l ++ yy++lp d   +  +vlDPm+AtG+t++ +++llk+ g+kki+v++ +a++ g ek+ k+hpdv + v +id++L ++g I+PGLGDaGDr f t
  MMETSP1174-20130828|22240_1   7 VSNHPVLLHKITQMRKAETDPREFRRLLREVTFKIGYEATSRLSTETLEITTPMGRCEGFKIS-NSIAIVPILRAGLGMVDPMLEMLPNASVHHIGMYRQKASLLPVLYYNRLPADNVSDVSFVLDPMIATGSTITVVVSLLKKWGTKKIVVVATLASRVGYEKLTKEHPDVAVHVGCIDDTLSDDGMILPGLGDAGDRQFWT 208
                  679****************************************************99877775.57*************************************************************************************************************************************9965 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-08   3.5e-05     213     248 ..     127     162 ..     116     177 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.7e-08
    TIGR01251 213 vvivDDiisTggTlvkaaelLkekGAkkvivaathg 248
                   +++D +i+Tg T++  ++lLk+ G kk++v+at++
  MMETSP1174-20130828|22240_1 127 SFVLDPMIATGSTITVVVSLLKKWGTKKIVVVATLA 162
                  699******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1047.40
//
Query:       MMETSP1174-20130828|22250_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 140.79
//
Query:       MMETSP1174-20130828|22251_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.6   0.3      0.055   11.1   0.2    1.2  1  TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172


Domain annotation for each model (and alignments):
>> TIGR02172  Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   1.3e-05     0.055      76     160 ..      71     155 ..      36     160 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
    TIGR02172  76 ikgkrs.lsriiseeperleelakifAeeakklHatkcdtsklksakekirklieekkfvpddykeklralieevpdtktClhgDl 160
                  + +k s lsr  s   +++++l          +H  +   +++++ +e++ +l++ k+++ +++  k++++++++ ++++ l+ +l
  MMETSP1174-20130828|22251_1  71 VGDKPSkLSRRASYSVQNVSKLLMGEGAAQLTVHRQSVSKNNFRCEQELA-RLFNSKDLLSNTDVAKAQEFMKSIAKSEKSLQIEL 155
                  5555443455555544444444444444455679999********98876.56677***********************9999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.64
# Mc/sec: 540.33
//
Query:       MMETSP1174-20130828|22244_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.51
# Mc/sec: 1291.42
//
Query:       MMETSP1174-20130828|22252_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-07   27.0   5.4    5.4e-07   27.0   3.8    1.5  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.7      0.22     9e+02     193     228 ..      48      69 ..      20      88 .. 0.58
   2 !   27.0   3.8   1.3e-10   5.4e-07      29      73 ..     181     226 ..     178     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.22
    TIGR00599 193 ekaverhldseClgspsagasktkPieskdssksss 228
                  +              ++a +s++ P++s  +  sss
  MMETSP1174-20130828|22252_1  48 H--------------EQAFSSQQPPVSSSSTASSSS 69 
                  1..............222244444444443333333 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.3e-10
    TIGR00599  29 ChvCkdf.fkaPvltsCsHtFCslCiRrcLseepkCPlCraedqEs 73 
                  C +C d  ++ P+  sC+H FC  C+ ++L++e  CPlCrae   s
  MMETSP1174-20130828|22252_1 181 CPICYDCpMNGPLALSCGHIFCEECVLEWLEKEKTCPLCRAEIAVS 226
                  999*9985788*****************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1038.08
//
Query:       MMETSP1174-20130828|22243_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.2  47.5      0.033    9.6  32.9    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.05    9.1  55.1       0.03    9.8  16.2    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.65    6.0  24.7       0.83    5.7  17.1    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  32.9   2.4e-05     0.033     243     518 ..      28     309 ..       8     318 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.4e-05
    TIGR02169 243 iekelaeleeelekleeeiee.lekeleeiekklee.lnkkieklgeee...qlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekke.reklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlk 518
                   +ke  + ++e  + e +i++ +e+e  +++++le+  +kkie+l        l++  +le++ + ++ +e+++ ++++e+ d+  +++++++ +++l+ee ++  + + ++ k+ + + ++e +e+++ + e+++ + ++d +   l+eel+e+ + le+   + +e+   ++ +  e k  ++e+ae  + ++++ ++i+++++ ++e++ ei +a++  +++k+  ++  ++  + k++ e l+ke  + + e++ +  + ++  + ++  + +++v k
  MMETSP1174-20130828|22243_1  28 QTKENFQTNNEEFDPELQIQKmQEDETTRAQQELEDkHAKKIEALECSSaliRLQLEMELESVMGALSTAEKKLVKANSEQDDLRSHIQQQDSALNRLREEGQKKLELLGSQLKKyKSNRSKEKNERHAFEFEVKQLALDKDSQILLLQEELMEKSRSLEQQAFKSQEMSAVIEEKDSEIKLYKAEVAEKTKIIKELDSEIEAMHAVVHEKNSEIVEAKNSESTAKAVAASHLEKNNEWKQKHETLSKEFDDHKTEYKTKFGELQTETKLHKRMSMQVQVYK 309
                  222222222222222222332122333344444433134445544322201124566667777777777777777777777777777777777777777665544444443333303333333333333333333444455666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666555555544444444444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  18.1    0.0028       3.8     276     432 ..      18     163 ..      12     171 .. 0.69
   2 ?    9.8  16.2   2.2e-05      0.03     318     459 ..     172     310 ..     160     326 .. 0.55

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0028
    TIGR02168 276 kseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekklee 432
                  +++ +++l++++ke +++++e  + e +i++++e +        +++++le++ +kk e+ e  ++l     +l+ eles+  +l++ae++l +++s++++l+ +++++ s++++l+e+    +++le l ++l++ +++r+++k+e+++ e ++++
  MMETSP1174-20130828|22243_1  18 VQNGQNDLNQQTKENFQTNNEEFDPELQIQKMQEDE------TTRAQQELEDKHAKKIEALECSSALI--RLQLEMELESVMGALSTAEKKLVKANSEQDDLRSHIQQQDSALNRLREEG---QKKLELLGSQLKKYKSNRSKEKNERHAFEFEVKQ 163
                  455566677777777777776666666666666653......34444455555555555444444443..36788899999999999999999999999999999999999999998876...4678888999999999988888887766555554 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 2.2e-05
    TIGR02168 318 leeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeele 459
                  +  l+e+l e+ +++e+++ + +e+++ +ee   e++  +ae++e+ + ++el s++e++ + + e++se+ e+++++++++a   +  ++ ++ ++++e l++e  +++   +e ++++ elq+e + ++++  +++  +e
  MMETSP1174-20130828|22243_1 172 ILLLQEELMEKSRSLEQQAFKSQEMSAVIEEKDSEIKLYKAEVAEKTKIIKELDSEIEAMHAVVHEKNSEIVEAKNSESTAKAVAASHLEKNNEWKQKHETLSKEFDDHK---TEYKTKFGELQTETKLHKRMSMQVQVYKE 310
                  44455566666666666666666666666666666666666666666666666666666666666666666666666666666555555555555555555555555543...33335555555555555555555554444 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  17.1   0.00061      0.83     199     488 ..      22     325 ..       3     336 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00061
    TIGR00934 199 deqdsvhsdqnsedvksdtsadesisslrfdeskekkk..strvpsekfakrresrdidpedlyrsimmlqekheata....................kirdkiseanslaaesdeesses.............rriqekikrrlstssieknsqqnltrlaktksfdd......skavrlersktidra..easdleeldrakdfqkmveknvka.akrkkknfkkreanlklfeksryakksdrneedngn....kkdasksneseevsldseenayptyndeeedsrhalsktesknYLswqPti.gRnsnFlgLtkeqkdELGGveyRalkllct 488
                  +++ + ++++n +  +++   +     l++++ +e+++   ++   +k ak++e+ + + + +    +m +e     +                     +r +i++++            s              ++ +++k+  s++s ekn++++++  +k+ + d        +   +e+s+  ++   ++++++ + +   ++++  k +ka   +k+k++k+ + +++ +++   +k+s+  e +n++    ++ as+  +++e +     +++ t ++e +d +++ +++ +   L  + ++  R s  +++ k   + L G++ Ra k++  
  MMETSP1174-20130828|22243_1  22 QNDLNQQTKENFQTNNEEFDPE-----LQIQKMQEDETtrAQQELEDKHAKKIEALECSSALIRLQLEMELE-----SvmgalstaekklvkanseqdDLRSHIQQQD------------SalnrlreegqkklELLGSQLKKYKSNRSKEKNERHAFEFEVKQLALDKdsqillLQEELMEKSRSLEQQafKSQEMSAVIE---EKDSEIKLYKAeVAEKTKIIKELDSEIEAMHAVVHEKNSEIVEAKNSEstakAVAASHLEKNNEWK-----QKHETLSKEFDDHKTEYKTKFG--ELQTETKLhKRMSMQVQVYK---EGLLGKKTRARKMMGL 325
                  2222222222222222222222.....222222222220022233344445555544444444444443333.....2445555444444433332221222233332............123333333444448999****************999998888877765322222222334444433332002222333333...333444444441456666777777777777777777777766666665443222222222222222.....2333333333333333333333..33334444124444444444...4555666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       683  (0.166504); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.19s 00:00:00.82 Elapsed: 00:00:00.63
# Mc/sec: 882.02
//
Query:       MMETSP1174-20130828|22253_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|22258_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1206.76
//
Query:       MMETSP1174-20130828|22262_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|22264_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 226.27
//
Query:       MMETSP1174-20130828|22267_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|22269_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.2   0.0    1.2e-11   42.0   0.0    1.0  1  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   2.8e-15   1.2e-11     251     340 ..      17     107 ..       5     108 .] 0.87

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 2.8e-15
    TIGR03417 251 arrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.kmsffegsarvPllvaaperleagrveaavstvdllPtl 340
                  a +  +  +  vdd + e ++v+++++  d+t   f+sdhG  lGe  +   k + ++  +rvPl +a p+  + + ++ +v t+dl Pt+
  MMETSP1174-20130828|22269_1  17 AFKNRWRVLMSVDDLVAEAVQVVKDAGEYDNTYFFFTSDHGFQLGEFNMIMdKRHVYDWDTRVPLYIAGPGIAAKTIIDLPVMTIDLAPTF 107
                  555566667789**********************************887654999****************888888999**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|22265_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.44
# Mc/sec: 1940.84
//
Query:       MMETSP1174-20130828|22270_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   29.2   0.0    1.6e-07   28.8   0.0    1.1  1  TIGR01177 TIGR01177: TIGR01177 family protein
    2.5e-05   21.5   0.0    3.3e-05   21.1   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      6e-05   20.5   0.0    7.9e-05   20.0   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0017   15.7   0.0     0.0021   15.4   0.0    1.1  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0061   14.1   0.0      0.013   13.0   0.0    1.5  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0082   14.3   0.0      0.014   13.6   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.3e-10   1.6e-07     178     295 ..      52     164 ..      50     184 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.3e-10
    TIGR01177 178 arvkegdrvlDPfcGTGgilIEAgLlGi..kviglDidekmveGariNLehYgiedfkvkrldakklplrsesvdaiatDpPYgrstkaagekleeLyeksleeleevlkeeGlivvavp 295
                   +++ gd++lDP  G G ++IEA+L  +  +   lD+d + ++ +r+  +  g++   v+    ++lpl+++s+d ++ D P+g   +         +e+ l+ l+ v+k  G   v+++
  MMETSP1174-20130828|22270_1  52 VGLRSGDKFLDPCGGVGILAIEASLSCVllSSTSLDLDPEAAALCRLHAKLAGVQVEAVICDSLRALPLMENSIDVAIADLPFGVRHTRID------VEHLLKRLAPVVKA-GQGKVLLV 164
                  67899********************8872255566***********9888888777668888899*******************7544322......34555556666665.45555555 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.9e-08   3.3e-05      35     150 ..      52     172 ..      45     183 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4.9e-08
    TIGR01934  35 ieeekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdav..tiafGlRNvt.diekaLkelaRVlkpg.grlvilefskpkna 150
                  ++ ++++k+lD ++G G laie + +   ++ t +Dl +e  ++ +  ak    +    i+ +  +Lp+ +ns+d++   + fG+R +  d+e+ Lk la V+k g g++++++ +++++ 
  MMETSP1174-20130828|22270_1  52 VGLRSGDKFLDPCGGVGILAIEASLSCVlLSSTSLDLDPEAAALCRLHAKLAGVQVEAVICDSLRALPLMENSIDVAiaDLPFGVRHTRiDVEHLLKRLAPVVKAGqGKVLLVDAMRNRKG 172
                  5567899****************999988888888888887777766655443333457788899*********97511578****98649999**********86488999998887764 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.2e-07   7.9e-05      88     166 ..      58     134 ..      45     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.2e-07
    TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal.eekgkfdlivsNPPY 166
                  +  k+lD + G G++a+     +  ++ +  D+++eA++++r  ak  g++ ve++  d l+al   ++++d+ ++  P+
  MMETSP1174-20130828|22270_1  58 D--KFLDPCGGVGILAIEASLSCVLLSSTSLDLDPEAAALCRLHAKLAGVQ-VEAVICDSLRALpLMENSIDVAIADLPF 134
                  4..89**********************************************.*********9998789999999988775 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06    0.0021     159     233 ..      56     132 ..      38     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3e-06
    TIGR00406 159 kdkkviDvGcGSGiLsiaalklga.akvvavDiDplavesarkNlelNqvsdllqvklen.leqkiegkaDvivaNi 233
                   ++k +D   G GiL+i a +  +  + +++D+Dp a    r  ++l +v+ ++ +  +      +e+ +Dv +a +
  MMETSP1174-20130828|22270_1  56 SGDKFLDPCGGVGILAIEASLSCVlLSSTSLDLDPEAAALCRLHAKLAGVQVEAVICDSLrALPLMENSIDVAIADL 132
                  4589999999*******9988766268899********************9998888776678899999***99987 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     2e-05     0.013      19      75 ..      56     114 ..      42     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
    TIGR00537  19 knddvleiGaGtGlvairlkekgk..kivatdinPfavkllkenaklnnveldvlesdl 75 
                   +d+ l+   G G++ai ++  +     ++ d++P a+ l +  akl +v+++ +  d 
  MMETSP1174-20130828|22270_1  56 SGDKFLDPCGGVGILAIEASLSCVllSSTSLDLDPEAAALCRLHAKLAGVQVEAVICDS 114
                  4566999999*************94445678*********************9998885 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     2e-05     0.014      15      75 ..      52     112 ..      39     131 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2e-05
    TIGR02469  15 LrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieive 75 
                  + l+ gd++lD  +G G ++iea+  +  ++ ++++ ++ea+ l +  ++  gv+  +++ 
  MMETSP1174-20130828|22270_1  52 VGLRSGDKFLDPCGGVGILAIEASLSCVLLSSTSLDLDPEAAALCRLHAKLAGVQVEAVIC 112
                  568999************************************9999888777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|22271_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 741.17
//
Query:       MMETSP1174-20130828|22276_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|22277_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|22275_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 949.47
//
Query:       MMETSP1174-20130828|22281_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1174-20130828|22282_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 549.24
//
Query:       MMETSP1174-20130828|22283_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|22284_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1174-20130828|22286_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 827.47
//
Query:       MMETSP1174-20130828|22287_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-10   38.6   0.0    1.3e-10   38.6   0.0    1.0  1  TIGR00020 prfB: peptide chain release factor 2


Domain annotation for each model (and alignments):
>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   3.3e-14   1.3e-10      84     140 ..      24      80 ..       2      81 .] 0.88

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 3.3e-14
    TIGR00020  84 elakeekdeellaeleeelkalekelkelelktllsgeydaknalltiqaGaGGtea 140
                   l +  ++e ll e++++l++l+++l+++++++ll+g+yd+ ++llti aGaGGt+a
  MMETSP1174-20130828|22287_1  24 SLKTGSEEEALLIEASSDLDQLDRDLEAFQMEVLLNGPYDSCDCLLTITAGAGGTDA 80 
                  5666778889999******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1174-20130828|22289_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1    8.6   7.8       0.11    8.4   5.4    1.0  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter
        2.6    4.7  19.3        7.6    3.2  13.4    1.6  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4   5.5e-05      0.11     516     639 ..       8     133 ..       2     146 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 5.5e-05
    TIGR00844 516 lrdk.keieddielndlgrerlqkekearaatidlstavteqlgeeigragdleerekvnikerseavntiysldklaedtenkdvtrvetsrvdgieseiddvd...eyesdsesiaslerrrikkl 639
                  l+ +  e+++  e +++++++l+ e earaa +++   +++  ++e     ++ ++e + + er++a + ++ l+  a+ te++   ++++s++ + +  ++ +    + es+ e+ +  er+r+ +l
  MMETSP1174-20130828|22289_1   8 LQARtAELQSALEASKVTENELRLELEARAAELESALETSKVTENELRLELEERHNESLLELERTKATEHVMQLELEARTTELRT--EIKKSKITENQLLFELEArtnQPESNLETWQVGERERLLEL 133
                  55443799999*******************9988877777777777777777788889999*********************985..56667776655444433300033444456677777777665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  13.4    0.0037       7.6      81     208 ..      10     141 ..       5     146 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0037
    TIGR01843  81 adaaelesqvlaleaevarlraeanseeaiefpdillsae.d...avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelq 208
                  a +ael+s + a + +++ lr e+++++a   ++ ++s+  +   +++    ++esl+e ++++  + + +le + +  e + e  ++++++++   el +++ +  ++L+  ++ +r +lLele + ++ +
  MMETSP1174-20130828|22289_1  10 ARTAELQSALEASKVTENELRLELEARAAELESALETSKVtEnelRLELEERHNESLLELERTKATEHVMQLELEARTTELRTEIKKSKITENQLLFELEARTNQPESNLETWQVGERERLLELEASTEASS 141
                  444555555555554444444444444432222222222221322222222333445555555555556665555555555555566666666666666666666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 603.95
//
Query:       MMETSP1174-20130828|22291_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 418.72
//
Query:       MMETSP1174-20130828|22292_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-30  102.9   0.3    4.8e-30  102.3   0.2    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    7.6e-18   62.6   0.6    1.1e-16   58.8   0.1    2.0  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.7e-17   59.7   0.1    8.2e-17   58.9   0.1    1.5  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.2   3.5e-33   4.8e-30     556     723 ..       1     187 [.       1     189 [] 0.83

  Alignments for each domain:
  == domain 1    score: 102.3 bits;  conditional E-value: 3.5e-33
    TIGR01243 556 daiapargadlseavtdrivnqllteldgl............e..ensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvake.k.leaeekei.....lkdlkvkkkdflealkkvkpsvskedlrvye 723
                  d++a arg  ++++ + r+  +l+ ++dg+            e  +++ v+v+aatnrp  ld al r  rl++ i++p p    r e+f+i   ++++a dvd+e+l+   e y+gadi+ v+r+a+++++r+ + s+ ++ k lea +ke+       +  v++ df++al+kv  sv k+dl++y 
  MMETSP1174-20130828|22292_1   1 DSVAGARGGGQEHEASRRVKTELMVQMDGVgsadkgaekdgeEppPPKTVIVLAATNRPWDLDEALRR--RLEKRIYIPLPTAIGRRELFRINMGEVEIASDVDMEHLSTLCEDYSGADIAIVCRDASMMSMRRLMESARRKgKgLEAMQKELmsnqdALNTAVTQADFIKALNKVSKSVGKDDLQKYM 187
                  6788888888888888888888888888874333332222212223689*****************98..9****************************************************************99986532349******933333234689**********************995 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1   8.1e-20   1.1e-16     251     349 ..      37     135 ..      17     149 .. 0.91
   2 ?    2.5   0.0      0.01        14     347     363 ..     158     174 ..     138     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 8.1e-20
    TIGR01242 251 aeldGfdp..rgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerd 349
                  ae dG +p     v v+aatnr+  ld al r  r+++ i +plp+  Gr+e+++i   ++++a+dvd+e+l+ l e  sGad+  ++ +a m+++r+  +
  MMETSP1174-20130828|22292_1  37 AEKDGEEPppPKTVIVLAATNRPWDLDEALRR--RLEKRIYIPLPTAIGRRELFRINMGEVEIASDVDMEHLSTLCEDYSGADIAIVCRDASMMSMRRLME 135
                  6777777522468999*************988..9*************************************************************98755 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.01
    TIGR01242 347 erdkvtmedflkavekv 363
                   ++ vt++df+ka++kv
  MMETSP1174-20130828|22292_1 158 LNTAVTQADFIKALNKV 174
                  5689************8 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1     6e-20   8.2e-17     181     283 ..      22     136 ..       1     166 [. 0.76

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 6e-20
    TIGR01241 181 qlLvemDGfetne..............gvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkke 283
                   l+v+mDG ++++               vivlaatnrp  LD+aL r  r+++++ + +P   gr+e++++ + +v++a++vd++++++    +sGad+a ++ +a++++ r+  ++
  MMETSP1174-20130828|22292_1  22 ELMVQMDGVGSADkgaekdgeeppppkTVIVLAATNRPWDLDEALRR--RLEKRIYIPLPTAIGRRELFRINMGEVEIASDVDMEHLSTLCEDYSGADIAIVCRDASMMSMRRLMES 136
                  5666666665432122222222222227*****************99..9************************************************************9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.51
# Mc/sec: 489.14
//
Query:       MMETSP1174-20130828|22297_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-25   85.6   0.2    6.7e-25   85.3   0.1    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      1e-12   45.2   0.2    1.2e-12   45.0   0.1    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    1.6e-11   41.5   0.2    1.7e-11   41.4   0.1    1.0  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.2e-10   37.3   0.4    3.6e-10   37.1   0.3    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.6e-09   33.9   0.1    1.9e-09   33.7   0.0    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    2.7e-09   34.6   1.1    3.5e-09   34.3   0.7    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.9e-09   32.7   0.2    3.3e-09   32.6   0.1    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    7.7e-08   29.4   0.1    8.7e-08   29.2   0.1    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    7.8e-08   29.2   0.3    9.8e-08   28.9   0.2    1.1  1  TIGR02734 crtI_fam: phytoene desaturase
    2.3e-07   27.6   0.4    2.8e-07   27.3   0.3    1.0  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    8.9e-07   26.7   0.2    1.2e-06   26.3   0.2    1.2  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      3e-06   24.3   0.1    3.5e-06   24.0   0.1    1.1  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    4.3e-06   23.9   0.5    5.1e-06   23.6   0.4    1.1  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    8.7e-06   22.5   0.0      1e-05   22.3   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    1.1e-05   22.6   0.7    1.3e-05   22.2   0.5    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    1.2e-05   21.9   0.3    1.3e-05   21.8   0.2    1.0  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    1.5e-05   21.8   0.0    1.7e-05   21.6   0.0    1.1  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.8e-05   21.4   0.1    2.2e-05   21.2   0.1    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    1.9e-05   21.9   0.2    2.2e-05   21.6   0.1    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    1.9e-05   21.4   0.3    2.3e-05   21.1   0.2    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    2.4e-05   21.4   0.3    2.9e-05   21.2   0.2    1.1  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      5e-05   20.0   0.2    5.7e-05   19.8   0.2    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    6.8e-05   19.6   0.0    7.5e-05   19.5   0.0    1.1  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
     0.0001   19.1   0.3    0.00013   18.7   0.2    1.1  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    0.00038   17.2   0.0    0.00044   17.0   0.0    1.1  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00058   16.4   0.0    0.00068   16.1   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00087   16.3   0.7      0.001   16.1   0.1    1.3  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00091   16.1   0.1      0.001   16.0   0.0    1.1  1  TIGR02053 MerA: mercuric reductase
    0.00092   15.8   1.0     0.0011   15.5   0.7    1.0  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
      0.001   15.7   0.5     0.0012   15.5   0.3    1.1  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0012   16.0   0.9     0.0012   15.9   0.6    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
     0.0012   15.5   0.4     0.0014   15.3   0.3    1.1  1  TIGR02028 ChlP: geranylgeranyl reductase
     0.0015   15.0   0.2     0.0015   15.0   0.2    1.1  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
      0.002   14.8   0.1     0.0023   14.6   0.1    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0021   15.0   0.4     0.0026   14.6   0.3    1.1  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0029   14.2   0.3     0.0034   14.0   0.2    1.1  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0031   14.2   0.2     0.0039   13.9   0.2    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
     0.0036   13.7   0.0     0.0043   13.5   0.0    1.1  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      0.005   13.4   0.2     0.0059   13.2   0.2    1.1  1  TIGR00551 nadB: L-aspartate oxidase
  ------ inclusion threshold ------
       0.01   12.2   0.0      0.012   12.0   0.0    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.016   12.2   0.0      0.016   12.1   0.0    1.1  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
      0.018   11.0   0.4      0.022   10.8   0.3    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.022   11.6   0.1      0.024   11.5   0.1    1.1  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
      0.028   10.7   0.3      0.033   10.4   0.2    1.1  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.029   11.1   0.7      0.036   10.8   0.5    1.1  1  TIGR00518 alaDH: alanine dehydrogenase
       0.04   10.7   0.0      0.043   10.6   0.0    1.1  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.041   10.5   0.1      0.054   10.1   0.0    1.1  1  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   7.7e-27   6.7e-25     355     443 ..       6      97 ..       2     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 7.7e-27
    TIGR03997 355 lgCvvnPraGrelkeavtlkk...arrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselke 443
                   +C+vnP+aG e++  +++++   ++++ kv vvG+GPaGl+aa taa+rGh+vtl++  + +GGq +la ++pg+ee+ e +r+ +++l++
  MMETSP1174-20130828|22297_1   6 ASCLVNPVAGYETELGKAVARpvaPGAQLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQFNLAKQVPGKEEFYETIRYFTHRLTN 97 
                  59**********44444444402255669*******************************************************99998876 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1   1.3e-14   1.2e-12     348     425 ..       6      86 ..       2      98 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 1.3e-14
    TIGR03996 348 vtcvGnpaaGfetvdpdeaeraatpgd...vlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaa 425
                   +c+ np aG+et       r ++pg+   v vvG GpaGl aa   a rGh vtl ++s  +GG    a + +G++++  
  MMETSP1174-20130828|22297_1   6 ASCLVNPVAGYETELGKAVARPVAPGAqlkVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQFNLAKQVPGKEEFYE 86 
                  58***********88888899999986222669******************************************998865 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   1.9e-13   1.7e-11     111     171 ..      11      71 ..       2      91 .. 0.91

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 1.9e-13
    TIGR01316 111 rfvadyarehGieeeeekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                    va y+ e G+ +    ap+++ kvav+GaGpaGla a   a +Gh vt+f++ +  GG 
  MMETSP1174-20130828|22297_1  11 NPVAGYETELGKAVARPVAPGAQLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71 
                  56999***********************************************998888875 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.3   4.2e-12   3.6e-10     143     182 ..      33      72 ..      17      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 4.2e-12
    TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                    kvavvG+GPaGlaaa   ++ Ghtvt+f+ +d +GG +
  MMETSP1174-20130828|22297_1  33 QLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQF 72 
                  569**********************************965 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   2.2e-11   1.9e-09     171     217 ..      36      81 ..      30      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 2.2e-11
    TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidGk 217
                  v vvGaGpaGLaaA +Aa+ G  v+l d +  +GG+ + + +++ Gk
  MMETSP1174-20130828|22297_1  36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQFNLA-KQVPGK 81 
                  88*********************************99865.456665 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.7   4.1e-11   3.5e-09       1      36 [.      36      71 ..      36      81 .. 0.95

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 4.1e-11
    TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGR 36
                 v+vvG+G AGLaAA++ a++G  vtl++++  +GG 
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71
                 89*********************************7 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   3.7e-11   3.3e-09     526     575 ..      22      71 ..       4      81 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.7e-11
    TIGR03315 526 eklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGv 575
                  + + +p + + + kvav+GaGPaGl+a+   a  G+ vt+f+ ++ +gG 
  MMETSP1174-20130828|22297_1  22 KAVARPVAPGAQLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71 
                  4455666677788*********************************9996 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   9.9e-10   8.7e-08       1      36 [.      36      71 ..      36      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 9.9e-10
    TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkK 36
                 v+++G+G+aGl aA taae+g+ V+l+++++ ig  
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71
                 79***************************9999865 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2   1.1e-09   9.8e-08       1      37 [.      36      72 ..      36      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.1e-09
    TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRa 37
                 + V+GaG +GLA+A   a  G++vt+++  d +GG  
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQF 72
                 57*********************************75 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3   3.2e-09   2.8e-07     141     181 ..      33      73 ..      22      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.2e-09
    TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGllt 181
                  + +vav+GaGpaGla a   a  G  v++fd  + iGG ++
  MMETSP1174-20130828|22297_1  33 QLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQFN 73 
                  569***********************************754 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   1.4e-08   1.2e-06       3      36 ..      36      69 ..      35      85 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.4e-08
    TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36
                 v vvGaGpaG +aA ++a+ G++V l++ ++ ++
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIG 69
                 679*************************998875 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1     4e-08   3.5e-06       1      38 [.      35      72 ..      35      85 .. 0.94

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4e-08
    TIGR02732  1 kvaivgaglaglatavelvdaghevelyesrsflggkv 38
                 kva+vgag agla+a   +++gh v l++s   +gg+ 
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQF 72
                 79**********************************85 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.4   5.9e-08   5.1e-06       2      33 ..      35      66 ..      34      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.9e-08
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlkVtvierss 33
                 +v+vvGaG  Gla A +aa+rG++Vt+++ s+
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSD 66
                 699*************************9875 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-07     1e-05       1      51 [.      35      87 ..      35      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.2e-07
    TIGR02731  1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedg..dwyet 51
                 +va+ gag agl+aa   a+ ght  ++++ dv+gg+    k+  g  ++yet
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQFNLAKQVPGkeEFYET 87
                 69**********************************99877776653356776 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.5   1.5e-07   1.3e-05       1      34 [.      35      68 ..      35      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.5e-07
    TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdekl 34
                 kvav+GaG Ag+a+a + a+rG+ vtl+++++ +
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVI 68
                 69***************************98755 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   1.5e-07   1.3e-05     211     251 ..      32      74 ..       9      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.5e-07
    TIGR03140 211 ekydvlvvGgGPagaaaaiyaarkGlkvalv..aeriGGqvkd 251
                  ++  v vvG+GPag aaa  aa +G  v+l   ++ iGGq + 
  MMETSP1174-20130828|22297_1  32 AQLKVAVVGAGPAGLAAACTAAERGHTVTLFdsSDVIGGQFNL 74 
                  56789*************************844688****875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.9e-07   1.7e-05       2      50 ..      35      81 ..      34      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.9e-07
    TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegke.aggqlttttevenyPGf 50
                 +v+++GaGpaGl+aa  aa  + ++ l+++++  ggq +++++v   PG 
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSDvIGGQFNLAKQV---PGK 81
                 799*************9998888877777665268999999887...555 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   2.5e-07   2.2e-05       3      38 ..      35      70 ..      33      89 .. 0.94

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-07
    TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGG 38
                 +v v+GaG aGl+aa   a+rG +vtl+++  ++GG
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGG 70
                 799********************************9 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   2.5e-07   2.2e-05      21      60 ..      33      72 ..      17      80 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.5e-07
    TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGs 60
                 +  v++vGaGp+GL+aa   a++g  v +++++  iGG  
  MMETSP1174-20130828|22297_1 33 QLKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQF 72
                 5679*****************************9999965 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   2.6e-07   2.3e-05       2      38 ..      36      71 ..      35      78 .. 0.92

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.6e-07
    TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38
                 v vvG+G AGl+aa  a ++g + v + +  +viGG 
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERG-HTVTLFDSSDVIGGQ 71
                 88*******************.9*************6 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   3.3e-07   2.9e-05       1      32 [.      36      67 ..      36      75 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.3e-07
    TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekdev 32
                 v+v+G+G  Gl+ A  +a+rgh vtl+++++v
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDV 67
                 79**************************9864 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   6.5e-07   5.7e-05       3      37 ..      35      70 ..      33      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 6.5e-07
    TIGR01350  3 dvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37
                  v v+G+Gp+G  aA +aa+ g  v+l +  + +GG
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSsDVIGG 70
                 689************************999566777 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.6e-07   7.5e-05       2      33 ..      35      66 ..      34      88 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8.6e-07
    TIGR03026  2 kiavvGlGYvGlplaallaekgheVvgvDidk 33
                 k+avvG+G  Gl+ a   ae+gh+V+++D ++
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSD 66
                 89***************************875 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   1.5e-06   0.00013       5      37 ..      33      65 ..      31      79 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.5e-06
    TIGR02279  5 vvkvaviGaGamGaGiaqvaaraGhtvllydir 37
                 + kvav+GaG  G   a  aa+ Ghtv l+d++
  MMETSP1174-20130828|22297_1 33 QLKVAVVGAGPAGLAAACTAAERGHTVTLFDSS 65
                 579****************************86 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.1e-06   0.00044       2      36 ..      36      70 ..      35      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 5.1e-06
    TIGR04018  2 viiiGaGPiGlaaaieakkaglsyliiekgalvns 36
                 v ++GaGP Glaaa  a ++g ++++++ + ++  
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGG 70
                 78***********************9999888755 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.8e-06   0.00068       3      44 ..      34      73 ..      32      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.8e-06
    TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy 44
                  kv+vvG+G +GL++a + + +  +  ++l++++d +GG+  
  MMETSP1174-20130828|22297_1 34 LKVAVVGAGPAGLAAACTAAER--GHTVTLFDSSDVIGGQFN 73
                 58**************998888..999************875 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.9   8.7e+02     269     281 ..       6      18 ..       5      29 .. 0.66
   2 !   16.1   0.1   1.2e-05     0.001       2      37 ..      36      71 ..      35      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 9.9
    TIGR01790 269 aAglvHPatgYsv 281
                  a  lv P++gY  
  MMETSP1174-20130828|22297_1   6 ASCLVNPVAGYET 18 
                  5678999999964 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.2e-05
    TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaapklpfn 37
                 ++v+G+G+Agla A   a++g  v l ++++ ++++
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71
                 79*************************999988876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05     0.001       2      37 ..      35      71 ..      34      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-05
    TIGR02053  2 dlviiGsGaaafaaaikaaelgakvvlverG.ilGGt 37
                 +++++G G a++aaa  aae g  v+l ++  ++GG 
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSSdVIGGQ 71
                 799************************9865156664 PP

>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   1.3e-05    0.0011     165     202 ..      34      71 ..      17      78 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
    TIGR00561 165 akvlvigagvaglaaigaakslgaivrafdtrpevkeq 202
                   kv v+gag aglaa  +a   g  v  fd+  ++  q
  MMETSP1174-20130828|22297_1  34 LKVAVVGAGPAGLAAACTAAERGHTVTLFDSSDVIGGQ 71 
                  499****************************9888766 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.4e-05    0.0012       3      33 ..      35      65 ..      33      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-05
    TIGR02485  3 dvlviGgGlaglCaaiearraGasvllleaa 33
                 +v v+G+G agl aa +a++ G +v l++++
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDSS 65
                 689*************************986 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   1.4e-05    0.0012     145     190 ..      22      66 ..       3      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-05
    TIGR03366 145 aaaleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsa 190
                   a+ + ++  +  +v v+GaG  GL+aa +a+erG  +v+ +D s+
  MMETSP1174-20130828|22297_1  22 KAVARPVAPGAQLKVAVVGAGPAGLAAACTAAERGH-TVTLFDSSD 66 
                  56667777788899**********************.599999875 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   1.6e-05    0.0014       1      30 [.      34      63 ..      34      75 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-05
    TIGR02028  1 lrvavvgggpagasaaetlakagiqtflle 30
                 l+vavvg gpag +aa t a+ g    l++
  MMETSP1174-20130828|22297_1 34 LKVAVVGAGPAGLAAACTAAERGHTVTLFD 63
                 79*********************9998886 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.8e-05    0.0015     176     217 ..      18      61 ..       1      96 [. 0.70

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-05
    TIGR02819 176 tgyhgavtagvktgst..vyiagagpvglaaaasarllgaavvi 217
                  t    av+  v +g+   v + gagp glaaa +a   g +v++
  MMETSP1174-20130828|22297_1  18 TELGKAVARPVAPGAQlkVAVVGAGPAGLAAACTAAERGHTVTL 61 
                  4455688999999997225667**********988766666554 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   2.7e-05    0.0023       2      33 ..      36      66 ..      35      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.7e-05
    TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                 +++vG+G++Gla A++ a+++   v+l+++++
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERG-HTVTLFDSSD 66
                 89**************99877.8999998865 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3     3e-05    0.0026       2      31 ..      35      64 ..      34      70 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3e-05
    TIGR02023  2 dvlviGggpsGaaaaetLakagieviller 31
                 +v+v+G+gp+G aaa t a+ g+ v l++ 
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFDS 64
                 79***********************99885 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   3.9e-05    0.0034       1      32 [.      36      67 ..      36      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.9e-05
    TIGR01811  1 vivvGtGlaGlsaaiklaelGydvklfsyqda 32
                 v vvG+G aGl+aa ++ae+G  v+lf   d 
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDSSDV 67
                 679************************88775 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   4.5e-05    0.0039       5      33 ..      36      64 ..      32      71 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-05
    TIGR01438  5 liviGgGsGGlaaakeaaklgakvllldf 33
                 + v+G+G+ Glaaa  aa+ g  v l+d 
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLFDS 64
                 579************************96 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     5e-05    0.0043       7      48 ..      36      78 ..      33      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5e-05
    TIGR03143  7 lvviGgGpaglsaGiyag.raklkvliiekdelGGqititsev 48
                 + v+G+Gpagl+a   a+ r +  +l    d +GGq +++++v
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAeRGHTVTLFDSSDVIGGQFNLAKQV 78
                 679********998876537888888888999******99887 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   6.8e-05    0.0059       2      35 ..      33      67 ..      32      77 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.8e-05
    TIGR00551  2 eadvvviGsGaagLsaalalaekyr.vvvlskaev 35
                 + +v+v+G+G agL+aa ++ae+++ v++    +v
  MMETSP1174-20130828|22297_1 33 QLKVAVVGAGPAGLAAACTAAERGHtVTLFDSSDV 67
                 679************99999988876888776665 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014     0.012       6      53 ..      37      85 ..      33     102 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00014
    TIGR01424  6 fviGaGsGGvraarlaaalGakvaiaee.dlvGGtcvirGcvPkkllvy 53
                  v+GaG  G++aa  aa+ G  v++ +  d++GG   +   vP k   y
  MMETSP1174-20130828|22297_1 37 AVVGAGPAGLAAACTAAERGHTVTLFDSsDVIGGQFNLAKQVPGKEEFY 85
                 69**********************9986256899988888888876655 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019     0.016     145     177 ..      33      65 ..      18      96 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00019
    TIGR03911 145 ekdvlviGlGkvGtaaavalvkkGakvyvydke 177
                  + +v v+G+G+ G aaa    ++G  v  +d  
  MMETSP1174-20130828|22297_1  33 QLKVAVVGAGPAGLAAACTAAERGHTVTLFDSS 65 
                  55799***********************99976 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00025     0.022       4      29 ..      35      60 ..      32      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00025
    TIGR01816  4 dvvvvGaGGaGlraalelakeglkta 29
                  v vvGaG aGl aa ++a++g+ ++
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVT 60
                 688*******************9876 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00028     0.024     145     205 ..      17      78 ..       6      89 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00028
    TIGR00692 145 qeplGnavdtvlesdlaGesvlvsGaGpiGllavavakaaGasqvivsdkney...rlelakkv 205
                     lG av   ++ + a  +v+v+GaGp Gl a+  a + G   v + d ++    + +lak+v
  MMETSP1174-20130828|22297_1  17 ETELGKAVARPVA-PGAQLKVAVVGAGPAGLAAACTAAERGH-TVTLFDSSDViggQFNLAKQV 78 
                  5567777776654.4456689**********99998888875.566666666423356777766 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00038     0.033       2      27 ..      36      61 ..      35      67 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
    TIGR01812  2 vvivGaGlAGlraAveaakkglkvav 27
                 v +vGaG AGl aA+ aa++g+ v +
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTL 61
                 789*****************998876 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00041     0.036     154     197 ..      21      63 ..      13      73 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00041
    TIGR00518 154 GrGvllgGvpGveagkvtiiGgGvvGtnaaklavGlGatvtild 197
                  G+ v     pG +  kv+++G+G +G  aa  a   G tvt++d
  MMETSP1174-20130828|22297_1  21 GKAVARPVAPGAQ-LKVAVVGAGPAGLAAACTAAERGHTVTLFD 63 
                  5555555667754.69*************************998 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00049     0.043       3      29 ..      36      62 ..      34      85 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00049
    TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaii 29
                 v+++G+G aGl++a ++ae+G+ + + 
  MMETSP1174-20130828|22297_1 36 VAVVGAGPAGLAAACTAAERGHTVTLF 62
                 79*******************998876 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00062     0.054       2      30 ..      35      63 ..      34      68 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00062
    TIGR00137  2 kvnviGgGlaGseaawqlakeGvrvilye 30
                 kv v+G+G aG  aa   a++G+ v l++
  MMETSP1174-20130828|22297_1 35 KVAVVGAGPAGLAAACTAAERGHTVTLFD 63
                 799**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                        47  (0.0114578); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              47  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|22294_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   18.8   0.8     0.0081   11.9   0.1    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.029   10.8   3.1      0.071    9.5   1.6    2.0  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0   0.00032      0.65     152     220 ..      22      89 ..      16      94 .. 0.70
   2 !   11.9   0.1     4e-06    0.0081     162     227 ..     115     180 ..     108     215 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00032
    TIGR02917 152 laiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkai 220
                  +  ++++ +a ++    + +++  +  r++ +  L ++++++d + L+g++l+ +g++e A ++y+ a+
  MMETSP1174-20130828|22294_1  22 QIEEQERQKATAQRPGTSCSHDH-SRERQVYELPLDKKIEAMDRFHLRGNILFDEGQYEMASEQYKSAM 89 
                  55555555555555555554443.333566677788999999999999999999999999999999887 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 4e-06
    TIGR02917 162 klglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnai 227
                  +l +A   ++++ +dea +   +vL ++p nv+Al  ++++ ++++++ eA a++  a +  pn++
  MMETSP1174-20130828|22294_1 115 NLNSAACNMKAGLYDEALNNCYQVLREEPLNVKALYRRAQMYRIRDQFSEAKADLLLAWRELPNDV 180
                  6889999*********************************************99877777666665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6   3.4e-05     0.071     164     217 ..     116     169 ..      16     215 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.4e-05
    TIGR00990 164 snraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl 217
                   n aac    + +++ +++  + l+ +p  vkal rra+ y    ++++a  dl
  MMETSP1174-20130828|22294_1 116 LNSAACNMKAGLYDEALNNCYQVLREEPLNVKALYRRAQMYRIRDQFSEAKADL 169
                  345555555555555555555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.47
# Mc/sec: 1300.23
//
Query:       MMETSP1174-20130828|22299_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1174-20130828|22300_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-22   75.1  13.0    1.6e-06   25.8   0.0    7.1  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.042   1.7e+02       7      25 ..      41      59 ..      39      63 .. 0.78
   2 !    7.9   0.0   0.00019      0.78      16      35 .]     114     133 ..     111     133 .. 0.85
   3 !   25.8   0.0   3.9e-10   1.6e-06       1      34 [.     134     168 ..     134     169 .. 0.92
   4 !   23.0   0.3   3.1e-09   1.3e-05       3      34 ..     172     203 ..     170     204 .. 0.92
   5 !    3.1   0.0    0.0063        26      19      35 .]     224     240 ..     207     240 .. 0.83
   6 !    9.1   0.0   7.8e-05      0.32       1      27 [.     241     267 ..     241     267 .. 0.97
   7 !    7.9   0.1   0.00018      0.76       6      30 ..     285     309 ..     283     311 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.042
    TIGR00756  7 isglckagrveeAlelfde 25
                 ++ + ka++++e++ l+ +
  MMETSP1174-20130828|22300_1 41 MKRMRKAKNWKEVEALLAS 59
                 6667799999999999865 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00019
    TIGR00756  16 veeAlelfdeMkergivPda 35 
                  + +A  l+++M+++gi+Pd+
  MMETSP1174-20130828|22300_1 114 YAKAQALLRRMERSGIRPDV 133
                  6677789***********96 PP

  == domain 3    score: 25.8 bits;  conditional E-value: 3.9e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMker.givPd 34 
                  vty++ ++  + agr+e+Al+l+deM+e+  + P+
  MMETSP1174-20130828|22300_1 134 VTYTAAMNVASTAGRWEDALRLMDEMEESgRCTPN 168
                  7*************************999677788 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 3.1e-09
    TIGR00756   3 yntlisglckagrveeAlelfdeMkergivPd 34 
                  ynt+i +++k g++e  + l+++M+ ++++ d
  MMETSP1174-20130828|22300_1 172 YNTVIYACAKCGQWEAIMALMERMRLKKMKHD 203
                  *************************9998866 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.0063
    TIGR00756  19 AlelfdeMkergivPda 35 
                   l l++ M+++ ++P+a
  MMETSP1174-20130828|22300_1 224 SLVLLEVMEKDECEPNA 240
                  5678999********96 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 7.8e-05
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMk 27 
                  +ty +li+ l+  ++   +++++d+M+
  MMETSP1174-20130828|22300_1 241 YTYASLIHILSDGNQSQAVVQFYDKMV 267
                  7*************************5 PP

  == domain 7    score: 7.9 bits;  conditional E-value: 0.00018
    TIGR00756   6 lisglckagrveeAlelfdeMkerg 30 
                  +++++   g+v +A+++ ++Mk +g
  MMETSP1174-20130828|22300_1 285 MLRACESVGDVTKAKQVAELMKCDG 309
                  99*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1158.57
//
Query:       MMETSP1174-20130828|22301_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 765.54
//
Query:       MMETSP1174-20130828|22302_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|22305_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|22308_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-05   19.9  17.9     0.0034   15.0   0.7    4.2  4  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   0.1    0.0082        34      14      22 ..       2      10 ..       1      17 [. 0.82
   2 !   11.3   0.6   1.2e-05     0.051       6      19 ..      20      32 ..      20      35 .. 0.92
   3 !   15.0   0.7   8.4e-07    0.0034       7      27 ..      46      64 ..      44      65 .. 0.90
   4 ?    1.2   0.2     0.021        85       6      16 ..      70      80 ..      70      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0082
    TIGR01376 14 gsGGAIyat 22
                 ++GGA++++
  MMETSP1174-20130828|22308_1  2 HGGGALFGS 10
                 79***9986 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.2e-05
    TIGR01376  6 lFsnNsakgsGGAI 19
                 lF++N+ak +GGA 
  MMETSP1174-20130828|22308_1 20 LFNSNYAK-NGGAV 32
                 7*******.***95 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 8.4e-07
    TIGR01376  7 FsnNsakgsGGAIyatgkisi 27
                 F++N+a  +GGA+y++ + +i
  MMETSP1174-20130828|22308_1 46 FNSNTAV-GGGALYGD-YSTI 64
                 9******.*******9.8887 PP

  == domain 4    score: 1.2 bits;  conditional E-value: 0.021
    TIGR01376  6 lFsnNsakgsG 16
                 lFs Nsa ++G
  MMETSP1174-20130828|22308_1 70 LFSFNSASEGG 80
                 5888***9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|22304_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-19   66.0   5.0    1.8e-18   64.5   3.5    1.6  1  TIGR01301 GPH_sucrose: sucrose/H+ symporter


Domain annotation for each model (and alignments):
>> TIGR01301  GPH_sucrose: sucrose/H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   3.5   4.4e-22   1.8e-18     151     464 ..       2     314 ..       1     323 [. 0.81

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 4.4e-22
    TIGR01301 151 rvanaffslfmavGnvlGyaaGaysklykvfpftkteacevscanlksaflldiilllilttialsavkeklliasddvvesea..aaeskkgelavlvelfgalkelkksvwilllvtalnwiawfpfllfdtdwmGrevygGkveega................aydkGvraGalGlllnsvvlgitslgleklarklgaakllwgivnillaiclaatvlvtklakklrqlddgealppstgikasalivfailGiplaitysipfalasiyvstlGaGqGlslGvlnlaivipqiivslssgpldklfGGGnlpafvvaavaalvsGl 464
                  ++ana+f+++ ++G+   ya G+ s     + +  ++  + +  +++  fl++i+l+++   i ++ v+ek+l  + +  + ++   ++ ++    +   lf    el ++v  ++ v al w a   + +++  +mG+e+++G+++  +                 ++ Gvr  +  l ++  +    +l++  l + +g++ +lwg   +   i ++a+  v ++ +++ +             +  a + +++lG+p ++  +ip+al+    s+    +Gl + v+n+ + + q+ v+l+s pl  l+ GG +p +++ +v  l++G 
  MMETSP1174-20130828|22304_1   2 TEANALFAVWDGIGKTTSYALGSVSLAVPALAM--AG-DTEFALDVRIQFLISIVLMIVCMGIGVACVHEKPLPRTPKHGKVKTgfRSQMQEVVSKFRDALFSDRAEL-ETVQRVFKVCALFWYAMCVWQIYGPIYMGKEIWRGDPHGPDcgegaeeeedeecaryLFEAGVRGFSRSLSIANFLSMCAALTVPYLMKSFGSG-RLWGALIVFTMIDFVALFAVPFTFHSTAYR------------RFFATLAMSLLGLPWSVFLTIPYALVLRTYSD-NPDKGLFMAVMNMGLCLGQLSVTLAS-PLLLLLAGGRVPILFIVSVPVLAAGA 314
                  689********************9976544433..33.334567899*************************998876666544113444444445555677776666.56888899***************************9864434445577778888887889**********9999999999**************.9***99888889999988887777666663............3345556799***************9654443.45799******************986.9999********99999998888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1439.51
//
Query:       MMETSP1174-20130828|22309_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1174-20130828|22306_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|22314_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|22315_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-120  400.9   1.4   2.1e-120  400.7   0.9    1.0  1  TIGR00110 ilvD: dihydroxy-acid dehydratase
    2.8e-54  182.2   0.2    3.2e-54  182.0   0.2    1.0  1  TIGR01196 edd: phosphogluconate dehydratase
    1.3e-49  166.6   4.8    2.6e-49  165.6   3.3    1.4  1  TIGR03432 yjhG_yagF: putative dehydratase, YjhG/YagF family


Domain annotation for each model (and alignments):
>> TIGR00110  ilvD: dihydroxy-acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.7   0.9  1.5e-123  2.1e-120     157     494 ..       3     354 ..       1     358 [. 0.94

  Alignments for each domain:
  == domain 1    score: 400.7 bits;  conditional E-value: 1.5e-123
    TIGR00110 157 agklseeeleeiersacPtagsCsGlftansmacltealGlslPgsstlla.......tsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrkvPllaklkPsgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlr........vdqdvirsldnpvkkeg.glavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDien 494
                   g+l++e+ + ie++a P++g+Cs +ftan+m+++ ealGls Pg+++ +a       ++a+k++ ++ +   +  l+kk+ + rdil ke+f nai+++ alGGstn++Lhlla+a++agv +++ df+++ r vPlla+l+P g++ + dl+++GGv+ v+kel k g +h d++tvtG+t+ae+l++v+ l         +++ v+ sl++p+ + g +l ++ G+la+e avvk +g+e    +feG+a  f+se +a e++++gkvk G+v+viryeGP+G+PGm+emL P+sal+g+GLg +vaL+tDGrfsG+trG+++Ghv+Peaa gG+ia+v+dGD+i iD  +
  MMETSP1174-20130828|22315_1   3 VGQLDQETFTLIEKNALPGPGTCSAMFTANTMSAAVEALGLSPPGTASHPAcdrgtrtVTAQKRRDVEVAVDMLWGLLKKDTRARDILCKESFYNAIAVVYALGGSTNAILHLLALAHDAGVPFTIGDFNKVGRGVPLLANLSPHGSYHMSDLDEVGGVPVVMKELLKGGFIHGDVMTVTGRTVAENLAEVPDLDdidqsqfkLGEGVVYSLEQPFAAAGnHLTIVSGSLAPESAVVKLSGKET--SRFEGTAICFDSEGDAFEGVVSGKVKPGHVLVIRYEGPRGAPGMPEMLSPSSALIGAGLGADVALVTDGRFSGATRGVMVGHVTPEAADGGPIAVVQDGDRIVIDTGK 354
                  5899********************************************988232222245677777788888888999****************************************************************************************************************99886666666666666*********998768********************99..9********************************************************************************************************865 PP

>> TIGR01196  edd: phosphogluconate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.2   2.3e-57   3.2e-54     197     550 ..       2     355 ..       1     360 [. 0.85

  Alignments for each domain:
  == domain 1    score: 182.0 bits;  conditional E-value: 2.3e-57
    TIGR01196 197 aeGkvdreellksemasyhapGtctfyGtansnqmlvelmGlhlpgasfvnpntplrdal.treaakr....larltakngevlplaelideksivnalvgllatGGstnhtlhlvaiaraaGiilnwddlselsdlvpllarvypnGkadvnhfeaaGGlsflirellkeGllhedvetvagkGlrrytkepfledgkleyreaaeksldedilrkvdkpfsaeGG.lkllkGnlG..ravikvsavkeesrvieapaivfkdqaellaafkagelerdlvavvrfqGpk.anGmpelhklttvlGvlqdrgfkvalvtdGrlsGasGkvpaaihvtpealegGalakirdGdlirldavng 550
                  a G++d+e +   e ++  +pGtc+   tan+    ve +Gl  pg++  +p  +      t++  +     +  l +   + + + +++ + s+ na+  ++a GGstn  lhl+a+a+ aG+ ++  d++++   vplla + p G+  +  ++ +GG++++++ellk G++h dv tv+g+ + +   e      +l+  +  +  l e ++ ++++pf+a G  l +++G l    av+k+s   +e+   e  ai f+++ +  +   +g+++   v v+r++Gp+ a Gmpe+    ++l +    g  valvtdGr+sGa+  v    hvtpea++gG++a ++dGd+i +d+ +g
  MMETSP1174-20130828|22315_1   2 AVGQLDQETFTLIEKNALPGPGTCSAMFTANTMSAAVEALGLSPPGTA-SHPACDRGTRTvTAQKRRDvevaVDMLWGLLKKDTRARDILCKESFYNAIAVVYALGGSTNAILHLLALAHDAGVPFTIGDFNKVGRGVPLLANLSPHGSYHMSDLDEVGGVPVVMKELLKGGFIHGDVMTVTGRTVAENLAE----VPDLDDIDQSQFKLGEGVVYSLEQPFAAAGNhLTIVSGSLApeSAVVKLSG--KETSRFEGTAICFDSEGDAFEGVVSGKVKPGHVLVIRYEGPRgAPGMPEMLSPSSAL-IGAGLGADVALVTDGRFSGATRGVMV-GHVTPEAADGGPIAVVQDGDRIVIDTGKG 355
                  67899999999999*****************************99976.477666433320222222211102223344566678889***********************************************************************************************887654333....3455666777888999************996489******74468999996..788899***********************************9668****97665555.4567899*************999875.5************************8776 PP

>> TIGR03432  yjhG_yagF: putative dehydratase, YjhG/YagF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   3.3   1.9e-52   2.6e-49     221     565 ..      18     352 ..       2     360 .. 0.84

  Alignments for each domain:
  == domain 1    score: 165.6 bits;  conditional E-value: 1.9e-52
    TIGR03432 221 aspG.GGcqflGtaatsqvvaealGlalphsalaps...Gqpiwldlarrsaraalel....ekkGlstkdiltdkaienalvvhaafGGstnlllhipaiahaaglrrptvddwkrinkkvprlvdalpnGpvghptvkvflaGgvpevmlhlrklGlldedvktvtGetldelldwwekserreslkkrlrerdgvdpddvilspakakergltstvtfpkGnlapeGsvikstaidpsvvdedGvyrkkGkakvfvseksaikaikhekieaGdvlvligrGplGs.GmeetyqvtsalkylsfgkhvalitdarfsGvstGaciGhvspealaGGpiGklrdGdlieivi 565
                  a pG G c  + ta t     ealGl+ p +a  p+   G    +   rr    a+++     kk  + +dil+++++ na++v  a+GGstn +lh+ a+ah+ag+   t+ d++++ + vp l +  p G  + + +     Ggvp vm  l k G+++ dv+tvtG+t+ e+l    + +  ++ + +l   +gv     + +p  a     ++ +t+ +G lape +v+k +         +   r +G+a  f se +a + + ++k++ G vlv+  +Gp G+ Gm e+   +sal     g +val+td rfsG + G  +Ghv+pea  GGpi  ++dGd i i  
  MMETSP1174-20130828|22315_1  18 ALPGpGTCSAMFTANTMSAAVEALGLSPPGTASHPAcdrGTRTVTAQKRRDVEVAVDMlwglLKKDTRARDILCKESFYNAIAVVYALGGSTNAILHLLALAHDAGVP-FTIGDFNKVGRGVPLLANLSPHGSYHMSDLD--EVGGVPVVMKELLKGGFIHGDVMTVTGRTVAENLAEVPDLDDIDQSQFKL--GEGVVY--SLEQPFAA----AGNHLTIVSGSLAPESAVVKLSG--------KETSRFEGTAICFDSEGDAFEGVVSGKVKPGHVLVIRYEGPRGApGMPEMLSPSSALIGAGLGADVALVTDGRFSGATRGVMVGHVTPEAADGGPIAVVQDGDRIVIDT 352
                  4455367*************************999733344555555666666777652222689999**************************************96.59*********************98777665..57********************************9888877666555444..444422..23344444....466778899***********665........4456889************************************87**********************************************************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1082.91
//
Query:       MMETSP1174-20130828|22316_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 598.66
//
Query:       MMETSP1174-20130828|22319_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 401.04
//
Query:       MMETSP1174-20130828|22322_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 567.06
//
Query:       MMETSP1174-20130828|22321_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 992.36
//
Query:       MMETSP1174-20130828|22327_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 269.48
//
Query:       MMETSP1174-20130828|22330_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|22328_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   12.2   0.1       0.36    9.2   0.0    2.4  3  TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01610  phage_O_Nterm: phage replication protein O, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.11   4.6e+02      17      58 ..      73     114 ..      65     131 .. 0.76
   2 ?    9.2   0.0   8.7e-05      0.36      13      66 ..     131     188 ..     126     195 .. 0.80
   3 ?   -1.8   0.0      0.23   9.6e+02      10      35 ..     213     238 ..     211     241 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.11
    TIGR01610  17 alakadLsgRefrvllAilrltyGynkesdrvtaseiaeltk 58 
                     ++d+sg  +  l A+lrl    n+ + + t + i+ l +
  MMETSP1174-20130828|22328_1  73 NVVQVDMSGYIMSLLPALLRLLRSSNETARHRTSDLIGALAQ 114
                  566788888888888899999888888888888888888766 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 8.7e-05
    TIGR01610  13 ellealakadLsgRefrvllAi....lrltyGynkesdrvtaseiaeltklerkrvse 66 
                   lle ++++ Ls+ e r+   +    +r+ +G+n e   v+a  +  l+++ + + se
  MMETSP1174-20130828|22328_1 131 ALLEGKTGVALSQWEHRCSCVValeaIRKAVGHNPELSMVAAVALECLVGVLERELSE 188
                  58999***********97543322338***************9999998877766665 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.23
    TIGR01610  10 lanellealakadLsgRefrvllAil 35 
                  ++ +++++l k  +s++ +  l+Ai+
  MMETSP1174-20130828|22328_1 213 MNQMVVKSLVKGAMSSKSLPYLMAIT 238
                  77788999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 815.03
//
Query:       MMETSP1174-20130828|22332_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.39
# Mc/sec: 473.81
//
Query:       MMETSP1174-20130828|22331_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-13   47.7   0.1    1.5e-13   47.3   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.9e-05   21.4   0.1    5.6e-05   20.5   0.1    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1   7.5e-17   1.5e-13       2     187 ..     344     515 ..     343     526 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 7.5e-17
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  tg + a+k+l +d  e+ ++      e  l   + hP + +L  s + +   l+ v e+v+G  l  ++  +  L+ a+t  L +q +  ++  h++ +  RDL   n+m+ + +     +v+D+G + + +g+ +           + G+PaY  Pe +   p     D+++ G++v+e L G++
  MMETSP1174-20130828|22331_1 344 TGGALAVKILEKDFIEQLKQEEHVCQEAGLLGTIDHPFVNHLHASFQ-DTSHLYLVLELVNGGDLYSLVSEETRLTEAHTIFLTAQLVSVFTFIHSHDIAFRDLNTTNVMIGVDGY---LQVIDWGFAKVITGTSK----------TFCGTPAYLPPEIIDRKPHSLLVDVWSLGVLVFELLCGHT 515
                  88899********************************8777766655.5569***********************************************************88775...68*******99999988..........579***********************************95 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.7e-08   5.6e-05      47     138 ..     370     469 ..     355     476 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.7e-08
    TIGR03724  47 EarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  Ea ll ++ +  vn  +  + d+++  +v+e ++g +l  l++e++         l+ ++  +   +H+++i++ Dl t+N+++  d+ l +iD G +k+
  MMETSP1174-20130828|22331_1 370 EAGLLGTIDHPFVNHLHASFQDTSHLYLVLELVNGGDLYSLVSEETRlteahtiFLTAQLVSVFTFIHSHDIAFRDLNTTNVMIGvDGYLQVIDWGFAKV 469
                  5555555555555555556667888999*************9997778888655556677777889****************995388899*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 2169.77
//
Query:       MMETSP1174-20130828|22334_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 523.41
//
Query:       MMETSP1174-20130828|22329_1  [L=1079]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-56  187.8   0.3    2.3e-22   77.1   0.0    4.3  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.3e-38  130.6   0.1    1.3e-11   41.3   0.0    4.3  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.1e-36  123.8   0.0    1.7e-12   44.9   0.0    4.5  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.3e-35  119.4   0.2    2.6e-13   47.7   0.1    4.4  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    5.6e-34  115.6   5.8    9.7e-11   39.3   0.1    4.2  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.6e-31  107.4   0.1    2.8e-10   37.8   0.0    4.5  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.3e-31  106.1   2.3      6e-08   30.2   0.0    5.1  5  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.2e-30  104.5   0.0    3.1e-08   31.2   0.0    4.4  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.2e-30  103.1   0.3    1.8e-09   35.2   0.1    4.3  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.5e-30  102.0   0.0    1.1e-09   35.2   0.0    4.3  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    7.5e-30  101.9   0.3    1.2e-10   39.1   0.0    4.6  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.1e-29  101.4   0.2    4.9e-09   34.0   0.0    4.6  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.2e-29  100.3  10.3    2.2e-12   44.2   0.1    5.1  5  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.4e-29  100.6   0.4    5.9e-11   40.2   0.0    4.4  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.2e-28   97.0   1.3    1.2e-10   39.1   0.0    4.8  5  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.1e-27   94.9   0.0    5.6e-10   36.9   0.0    4.3  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-27   94.7   0.0    7.6e-07   26.6   0.0    4.8  5  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.9e-27   93.6   0.9    3.6e-10   37.7   0.5    4.3  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    5.2e-27   92.8   0.4    6.5e-08   30.4   0.0    4.5  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.1e-26   91.5   0.5    2.4e-09   35.0   0.0    4.5  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.4e-26   89.8   0.0    3.4e-09   33.7   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.2e-26   89.5   0.0    3.5e-10   36.8   0.0    4.2  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.4e-25   86.6   0.0    2.3e-07   27.2   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.3e-24   84.0   2.4    8.4e-12   43.0   0.0    4.6  5  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.3e-24   82.7   0.1    1.1e-06   26.3   0.0    4.4  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      9e-24   81.7   0.0    5.1e-08   29.7   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.2e-23   81.5   0.4      2e-08   31.6   0.0    4.4  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.9e-23   80.6   0.1    3.1e-07   28.1   0.0    4.4  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.4e-23   79.0   0.3    1.8e-07   27.7   0.0    4.5  5  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.5e-22   77.7   0.1    1.2e-07   28.5   0.0    4.2  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-22   77.7   0.0    3.2e-10   37.0   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.7e-22   76.6   0.2    6.6e-07   25.8   0.0    3.8  4  TIGR00958 3a01208: antigen peptide transporter 2
    4.8e-22   76.4   3.8      1e-08   32.7   0.0    4.2  4  TIGR01978 sufC: FeS assembly ATPase SufC
    6.7e-22   75.7   0.4    3.3e-05   20.9   0.0    4.2  4  TIGR01288 nodI: nodulation ABC transporter NodI
    1.2e-21   75.1   0.0    1.7e-07   28.6   0.0    4.3  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.2e-21   73.8   0.5    2.5e-09   34.7   0.0    4.0  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.2e-21   72.9   0.1    8.7e-06   23.2   0.0    4.4  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    9.5e-21   72.1   0.0      4e-08   30.8   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.4e-20   70.7   0.1    2.1e-10   38.0   0.1    4.2  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.6e-20   70.1   0.3    5.5e-07   26.7   0.0    4.2  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.1e-19   68.5   0.1      9e-09   32.6   0.1    4.0  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    5.2e-19   66.1   0.2    1.2e-05   21.9   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    5.9e-19   66.3   0.0    2.6e-05   21.8   0.0    4.3  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.4e-18   63.2   0.8    3.3e-05   20.3   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.5e-17   60.6   1.5    1.6e-06   25.7   0.0    3.9  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.5e-16   57.2   0.0    2.2e-07   27.7   0.0    3.3  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.2e-16   56.8   1.5    1.5e-05   22.1   0.0    4.5  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.3e-15   55.2   2.6    1.3e-06   25.8   0.1    4.5  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      1e-12   45.6   1.6    3.5e-08   30.6   0.1    3.8  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-12   45.0   0.1    8.7e-05   18.9   0.0    4.0  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.2e-12   43.1   0.1    5.6e-06   21.9   0.0    3.0  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.7e-12   42.8   0.1      1e-07   27.6   0.0    3.8  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.9e-10   37.9   0.0      0.033   11.5   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.2e-10   34.9   2.9    0.00022   16.0   0.0    3.5  4  TIGR01257 rim_protein: rim ABC transporter
      8e-07   25.8   0.0       0.01   12.2   0.0    3.0  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.8e-05   20.5   0.2       0.38    6.1   0.1    3.5  3  TIGR00606 rad50: rad50
    0.00014   17.4   0.1       0.31    6.3   0.0    3.7  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0044   14.6   0.0       0.62    7.7   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-06   0.00019     328     372 ..     454     498 ..     440     502 .. 0.90
   2 !   77.1   0.0   3.3e-24   2.3e-22     155     251 ..     560     657 ..     534     676 .. 0.89
   3 !   35.3   0.0   1.5e-11   1.1e-09     318     393 ..     686     763 ..     679     800 .. 0.90
   4 !   52.0   0.1   1.3e-16   9.4e-15     156     231 ..     915     992 ..     824    1075 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-06
    TIGR03719 328 lskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgke 372
                   + a+g k+l+++ ++kl +g+  G++G n +Gk+tl++ i++++
  MMETSP1174-20130828|22329_1 454 FTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQEQ 498
                  5678***********************************998764 PP

  == domain 2    score: 77.1 bits;  conditional E-value: 3.3e-24
    TIGR03719 155 edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk.GtvvavthdryfldnvaeWileldrGegipykgnysswleqke 251
                   d  v++lsGG + ++al+r +l k d+llldePtnhld   v+W++ +l   +  t ++v hd  fld+v+  il++d  +   +kgn ++++++  
  MMETSP1174-20130828|22329_1 560 LDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTnVTAICVSHDSGFLDDVCTHILQIDSLKLNMHKGNLTEFVKKVP 657
                  57889*********************************************99862689***********************************98754 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 1.5e-11
    TIGR03719 318 lGdkvievenlskaf..gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs 393
                   G+ ++++en+s ++  +d+  i  +++++  ++ vG +GpnGaGkst++k +tg+ +p +G+      +++ayv q+
  MMETSP1174-20130828|22329_1 686 KGKALMKMENVSYRYpiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRWAHPNLRMAYVAQH 763
                  58899999***99986689********************************************************996 PP

  == domain 4    score: 52.0 bits;  conditional E-value: 1.3e-16
    TIGR03719 156 dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnva..eWilel 231
                    +++ lsGG+k +v +   + ++P +++ldePtn+ld es+  l + +key+G vv++th+  f   ++   W++e 
  MMETSP1174-20130828|22329_1 915 HYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITHNDEFCRAICpeRWVIEK 992
                  567899***********************************************************9998744699883 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.2e-05    0.0016     470     514 ..     451     495 ..     424     500 .. 0.90
   2 !   41.3   0.0   1.9e-13   1.3e-11     597     680 ..     560     643 ..     553     660 .. 0.83
   3 !   32.7   0.0   7.5e-11   5.3e-09     466     523 ..     691     748 ..     681     751 .. 0.94
   4 !   36.2   0.0   6.8e-12   4.8e-10     600     663 ..     917     978 ..     896     990 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.2e-05
    TIGR03375 470 nvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklll 514
                  +++f+    +k  L+n+++k++ G+k +++G + sGK+tl++ ++
  MMETSP1174-20130828|22329_1 451 DCEFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  6677777778889***************************99775 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 1.9e-13
    TIGR03375 597 igerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGriv 680
                  + ++ + LSgG r  +alaRa+l + +illLDEPt++lD  + + +++ L  l ++ T + v+H + +L+ ++++i+ +d+ ++ 
  MMETSP1174-20130828|22329_1 560 LDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL-TNVTAICVSHDSGFLDdVCTHILQIDSLKLN 643
                  5566678*******************************************875.67999*******9996367888888877764 PP

  == domain 3    score: 32.7 bits;  conditional E-value: 7.5e-11
    TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGs 523
                  ++++nvs++Yp +++ ++  ++++++  ++v+ +G +G+GKst+ k l+g +ep+eG+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  789*****************************************************96 PP

  == domain 4    score: 36.2 bits;  conditional E-value: 6.8e-12
    TIGR03375 600 rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrts 663
                  r ++LSgGQ+  v++  a+ ++p++++LDEPt+ lD++s   l +++ke++ +  +v++tH  +
  MMETSP1174-20130828|22329_1 917 RMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGG--VVIITHNDE 978
                  5578*********************************************9986..8999*9865 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.03       2.1     327     369 ..     452     495 ..     415     501 .. 0.74
   2 !   44.9   0.0   2.5e-14   1.7e-12     450     521 ..     558     628 ..     540     636 .. 0.89
   3 !   29.9   0.0   8.3e-10   5.8e-08     317     378 ..     686     748 ..     661     769 .. 0.87
   4 !   37.7   0.0   3.6e-12   2.6e-10     447     520 ..     907     980 ..     889     985 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.03
    TIGR02857 327 vsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklll 369
                   +++   g+k  l++ +++++ g++++l+G   +GK+tl++ ++
  MMETSP1174-20130828|22329_1 452 CEFTLaYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  3333334666699**************************98765 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 2.5e-14
    TIGR02857 450 teiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                  ++++++ + LSgG r +laLAra+l +a++lllDEPt hLD    + v++ l   +++ t + v+H+   + 
  MMETSP1174-20130828|22329_1 558 KMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIG-LTNVTAICVSHDSGFLD 628
                  67899999******************************************9999.578999*****987665 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 8.3e-10
    TIGR02857 317 aassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGa 378
                  + +  +++envs++y+ ++   ++++ ++v+  ++v+ vG+ GaGKst++k+l g vep eG+
  MMETSP1174-20130828|22329_1 686 KGKALMKMENVSYRYPINDhFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  3334789********877778****************************************97 PP

  == domain 4    score: 37.7 bits;  conditional E-value: 3.6e-12
    TIGR02857 447 gleteiGer..gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlala 520
                  gl++e G +   + LSgGq+ ++ +  a+ ++ ++++lDEPt  LD+e+  ++ +a++e+a g  v++++H+++  
  MMETSP1174-20130828|22329_1 907 GLDREFGTHyrMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGG--VVIITHNDEFC 980
                  67777776511567*********************************************9987..899***99876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00027     0.019       8      48 ..     455     495 ..     449     501 .. 0.89
   2 !   47.7   0.1   3.6e-15   2.6e-13     114     212 ..     543     639 ..     531     652 .. 0.88
   3 !   23.6   0.0   7.9e-08   5.6e-06      12      57 ..     703     748 ..     691     765 .. 0.86
   4 !   30.3   0.0   7.3e-10   5.2e-08     134     210 ..     917     990 ..     895    1038 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00027
    TIGR03873   8 svraggrlivddvdvtaPaGaltgllGPnGsGkstllrlla 48 
                  ++  g+++++ + +++   G+  gllG n sGk+tl+r +a
  MMETSP1174-20130828|22329_1 455 TLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  56778999999**************************9886 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 3.6e-15
    TIGR03873 114 daevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldg 212
                   ++v d +l+    +++ d  +stlsGG r +  lara+  +  +llldePtnhldv     +   +  l  ++vt +   hd  +   vc h++ +d+
  MMETSP1174-20130828|22329_1 543 AKDVRDMLLSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL--TNVTAICVSHDSGFLDDVCTHILQIDS 639
                  55677777777778899999*************************************9888888888888..99*******************998775 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 7.9e-08
    TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGe 57 
                  +    +++++v++   +  g +GPnG+Gkst+++ l+G ++p++G+
  MMETSP1174-20130828|22329_1 703 NDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  556778999999999*****************************97 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 7.3e-10
    TIGR03873 134 dlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                   +++lsGG++ +v +  a+  +P++++ldePtn+ld ++  +l ++++e       vv+  h+ ++  ++c +  v+
  MMETSP1174-20130828|22329_1 917 RMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEY---AGGVVIITHNDEFCRAICPERWVI 990
                  6899********************************88877777888888...345666667777777777554444 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0    0.0002     0.014       3      37 ..     458     492 ..     457     497 .. 0.86
   2 !   34.8   0.0   3.2e-11   2.2e-09     115     201 ..     557     641 ..     516     670 .. 0.82
   3 !   28.8   0.0   2.2e-09   1.6e-07       8      49 ..     707     748 ..     701     752 .. 0.91
   4 !   39.3   0.1   1.4e-12   9.7e-11     102     258 ..     896    1055 ..     873    1076 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.0002
    TIGR01188   3 ygefkAvdgvnlkveegevfglLGPnGAGKtttik 37 
                  yg    +++ ++k+++g+ +glLG n  GKtt+++
  MMETSP1174-20130828|22329_1 458 YGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMR 492
                  56666678899*********************987 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 3.2e-11
    TIGR01188 115 keaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGk 201
                  ++  d  v t+sgG r +l la++++ + ++l LDEPt  LD+   + ++d++  l   +vt +  +h+    d ++ ++  id  k
  MMETSP1174-20130828|22329_1 557 TKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT--NVTAICVSHDSGFLDDVCTHILQIDSLK 641
                  4556889*********************************************98876..6889999999999999998888877655 PP

  == domain 3    score: 28.8 bits;  conditional E-value: 2.2e-09
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGt 49 
                   + g++++v+  + +g +GPnGAGK+t+ik Lt+ ++P++Gt
  MMETSP1174-20130828|22329_1 707 TITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  67899999999******************************8 PP

  == domain 4    score: 39.3 bits;  conditional E-value: 1.4e-12
    TIGR01188  102 eeraeellelvelkea..adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidk.....GkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkv 258 
                    + +e+ le v l     ++ +++ +sgG++ ++ ++a++ +qP+v+ LDEPt  LD ++  a+ + i+e       +++ th+ e   +++ +  +i+k     G++  ++ pe +K+ ++++vv++  + ++ ++++ ++  ++   ++l+ ++ ++++ + 
  MMETSP1174-20130828|22329_1  896 TNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEY---AGGVVIITHNDEFCRAICPERWVIEKmgdgiGRLDTQGDPEWMKHALDQKVVQT-DEPTEMIDASGNVTKVKAAPKKLSKKEEKQKKKRL 1055
                   4566777777777654224567899********************************88888777777655...55688889**9*********9999988777789999**************9983.33333344333333334433333333322222222 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0    0.0001    0.0072       6      49 ..     453     496 ..     449     519 .. 0.92
   2 !   37.8   0.0     4e-12   2.8e-10     138     212 ..     560     633 ..     535     657 .. 0.84
   3 !   12.8   0.0   0.00017     0.012       2      56 ..     691     747 ..     690     755 .. 0.80
   4 !   37.0   0.0   6.7e-12   4.7e-10     117     210 ..     895     984 ..     855    1005 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.0001
    TIGR00972   6 nlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                  +++l yg k  l++ ++++++ +  +l+G   +Gk+tl+rs+ +
  MMETSP1174-20130828|22329_1 453 EFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ 496
                  57899************************************964 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 4e-12
    TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdk 212
                  l++   +LsGG + +l++ara+ ++ ++lLlDePt  LD + ++ +++ +  L  ++t + v h+  +   v  +
  MMETSP1174-20130828|22329_1 560 LDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT-NVTAICVSHDSGFLDDVCTH 633
                  6677789**********************************************6.68999999998776666555 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00017
    TIGR00972   2 levknlklfy..gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlvee 56 
                  ++++n++  y  +++ +++ ++++++  + ++ +Gp G+Gkst++++l    +  e+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYpiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  677777777743566689999999999999*****************9766665555 PP

  == domain 4    score: 37.0 bits;  conditional E-value: 6.7e-12
    TIGR00972 117 ldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvs 210
                    + ve+ L++++l  e  ++ +   ++LsGGq+ +++i  a+  +P+v++lDePt  LD ++   + + i+e +    +vi+thn ++ + + 
  MMETSP1174-20130828|22329_1 895 TTNNVEKHLEDVGLDREFGTHYR--MNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG--GVVIITHNDEFCRAIC 984
                  56789999999999999877655..5569******************************************99886..6999****88877665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.4e-05    0.0038       7      38 ..     463     494 ..     458     498 .. 0.88
   2 !   30.1   0.0   9.1e-10   6.5e-08     107     186 ..     545     623 ..     536     626 .. 0.83
   3 !   25.5   0.0   2.3e-08   1.6e-06       7      48 ..     707     748 ..     702     755 .. 0.92
   4 !   30.2   0.0   8.5e-10     6e-08     107     186 ..     898     976 ..     893     979 .. 0.78
   5 ?   -0.4   0.0         2   1.4e+02     143     164 ..    1012    1033 ..    1010    1048 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.4e-05
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhl 38 
                   l++ +++++rg++ +llG n +Gk+tl++ +
  MMETSP1174-20130828|22329_1 463 LLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  578899***********************987 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 9.1e-10
    TIGR01166 107 rvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                   vr+ l  v  s ++ +  +++lsgG + ++a+a a+ l++d+llldePt  ld   ++ + + l +l++   t +  +hd
  MMETSP1174-20130828|22329_1 545 DVRDMLLSVHFStKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNV--TAICVSHD 623
                  577777777765246678899***************************************99999999874..44555666 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 2.3e-08
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGk 48 
                   ++g+ ++v+ +++++ +G+nGaGkst++++l+G + P +G+
  MMETSP1174-20130828|22329_1 707 TITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  578999*********************************996 PP

  == domain 4    score: 30.2 bits;  conditional E-value: 8.5e-10
    TIGR01166 107 rvrealaavdisg.l.eerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                   v++ l+ v+++  +  +  ++ lsgG+k +v i +a+  +p+v++ldePt  ld +    l++++++       vvi th+
  MMETSP1174-20130828|22329_1 898 NVEKHLEDVGLDReFgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE---YAGGVVIITHN 976
                  67777888877642324567899********************************9998888887765...44456666664 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 2
    TIGR01166  143 alrpdvllldePtagldpaGae 164 
                   al  +v+  dePt  +d++G+ 
  MMETSP1174-20130828|22329_1 1012 ALDQKVVQTDEPTEMIDASGNV 1033
                   677789999**********974 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   9.2e-05    0.0065      10      50 ..     457     496 ..     451     506 .. 0.90
   2 !   31.2   0.0   4.4e-10   3.1e-08     140     220 ..     561     638 ..     543     652 .. 0.84
   3 !   23.0   0.0   1.4e-07   9.6e-06       2      59 ..     691     749 ..     690     798 .. 0.85
   4 !   30.6   0.0   6.6e-10   4.6e-08     125     190 ..     898     965 ..     873     987 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.2e-05
    TIGR02315  10 vypngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50 
                   y+  k  l+n+++++++G   +++G   +Gk+tl+rsi +
  MMETSP1174-20130828|22329_1 457 AYG-TKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ 496
                  566.67889*****************************975 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 4.4e-10
    TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglk 220
                  +  +++LsGG + ++a+aRa++ +++++l DEP+  LD  + k v d+l  ++   ++t+i+  H+  +    +++i+ + 
  MMETSP1174-20130828|22329_1 561 DDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHDSGFLDDVCTHILQID 638
                  556899*******************************************9886...5777777788777777777777665 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 1.4e-07
    TIGR02315   2 levenlskvyp.ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsi 59 
                  +++en+s +yp n++ ++  + ++++    v+ +G+ GaGkst+++++ + ve+s+g+ 
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTR 749
                  7899******9567789*************************************99964 PP

  == domain 4    score: 30.6 bits;  conditional E-value: 6.6e-10
    TIGR02315 125 kAlelLervglael..aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr 190
                  +  + Le vgl+     + r+++LsGGq+ +v i  a+ +qp++++ DEP+  LD +s   + +++k+
  MMETSP1174-20130828|22329_1 898 NVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE 965
                  4557899999988633578************************************9987766666554 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.1e-05    0.0022       8      47 ..     455     494 ..     449     499 .. 0.91
   2 !   35.2   0.1   2.6e-11   1.8e-09     111     197 ..     544     631 ..     532     658 .. 0.84
   3 !   18.0   0.0   4.8e-06   0.00034       3      56 ..     692     747 ..     690     753 .. 0.81
   4 !   29.0   0.0   2.1e-09   1.5e-07     109     179 ..     895     967 ..     884     978 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.1e-05
    TIGR03864   8 sfaygkrralddvsltvakgefvaLLGpnGaGkstLfsll 47 
                  + ayg++  l++ ++++++g+   LLG n +Gk+tL+  +
  MMETSP1174-20130828|22329_1 455 TLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  679*********************************9765 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.6e-11
    TIGR03864 111 erieealarlglaera.eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeve 197
                  + ++++l  ++++ +  ++ v +L+GG r ++ +ara+l + ++LLlDe+t  LD+   + + +++  l++ + ++v     ++d+v 
  MMETSP1174-20130828|22329_1 544 KDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVTAICVSHDSGFLDDVC 631
                  55677777788877751667*********************************************************98888888775 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 4.8e-06
    TIGR03864   3 eveglsfaygkrr..alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakeg 56 
                  ++e++s++y  +   ++ +++++v+ ++ v  +GpnGaGkst+++ lt+ +e +eg
  MMETSP1174-20130828|22329_1 692 KMENVSYRYPINDhfTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  67889999965541167788888888889999****************98887776 PP

  == domain 4    score: 29.0 bits;  conditional E-value: 2.1e-09
    TIGR03864 109 aeerieealarlglaer..aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                  +++++e++l+++gl     ++ ++++L+GG++ +v i  a+  +P++++lDe+t  LD es  al ++++e +
  MMETSP1174-20130828|22329_1 895 TTNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYA 967
                  6789999*******98722466799**************************************9999998865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0019      0.13     327     364 ..     457     494 ..     424     501 .. 0.88
   2 !   26.4   0.0   7.4e-09   5.2e-07     435     519 ..     548     629 ..     537     656 .. 0.76
   3 !   26.0   0.0   9.5e-09   6.7e-07     315     374 ..     689     748 ..     669     756 .. 0.94
   4 !   35.2   0.0   1.6e-11   1.1e-09     453     515 ..     919     978 ..     903     990 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0019
    TIGR01842 327 peekkktlkgisfalkaGealaiiGpsgsGkssLarll 364
                  + + k  l++ +++l+ G+  +++G   sGk++L+r +
  MMETSP1174-20130828|22329_1 457 AYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  56678899****************************88 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 7.4e-09
    TIGR01842 435 elilrlpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel 519
                  +++l++   + t++ ++G ++LsgG r ++aLaRa+  +  +++LDeP   LD    + + + l+ l   ++t++ ++h    l+ 
  MMETSP1174-20130828|22329_1 548 DMLLSV--HFSTKMLDDGvSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL--TNVTAICVSHDSGFLDD 629
                  555544..3667776666379********************************99888888877665..46788888887777654 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 9.5e-09
    TIGR01842 315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                    +++envs++ p + + t++g++++++  + ++ +Gp g+Gks++ ++l+G ++p++G+
  MMETSP1174-20130828|22329_1 689 ALMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  56899*************************************************999996 PP

  == domain 4    score: 35.2 bits;  conditional E-value: 1.6e-11
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps 515
                  +aLsgGq+ ++ +  a++ +P++v+LDeP   LD e   ala+a+ke       vv+ith  +
  MMETSP1174-20130828|22329_1 919 NALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE---YAGGVVIITHNDE 978
                  68******************************************976...4677899999765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.042       2.9      19      50 ..     462     493 ..     454     500 .. 0.89
   2 !   39.1   0.0   1.7e-12   1.2e-10     120     208 ..     544     630 ..     535     649 .. 0.84
   3 !   15.2   0.0   3.5e-05    0.0025       3      61 ..     692     748 ..     690     758 .. 0.84
   4 !   36.2   0.0   1.3e-11   9.5e-10     121     207 ..     898     982 ..     891     992 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.042
    TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhl 50 
                   +l++ ++++++g   +++G   sGk+tl+  
  MMETSP1174-20130828|22329_1 462 ILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRS 493
                  4689*************************975 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 1.7e-12
    TIGR02211 120 erakellekvglekri.nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl 208
                  +   ++l  v+++ ++ +   s lsGG r + a+ara++ k +++l dePt +ld  + k + + l  l    n++ + v+hd+ + + +
  MMETSP1174-20130828|22329_1 544 KDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHDSGFLDDV 630
                  456789999999988637789*******************************************999885...6777899***9987654 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 3.5e-05
    TIGR02211   3 kcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGe 61 
                  k en++ +y  +  +  +++g+ ++++ +  v+ vG  G+Gkst++  l+g  +p++G+
  MMETSP1174-20130828|22329_1 692 KMENVSYRYPIN--DHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  566666555544..4556789999****************************9**9996 PP

  == domain 4    score: 36.2 bits;  conditional E-value: 1.3e-11
    TIGR02211 121 rakellekvglekri..nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                  + ++ le vgl++    +++  +lsGG++ +v i  a+ n+P++v+ dePt  ld+++  ++ + ++    e+  +++++th++e+ + 
  MMETSP1174-20130828|22329_1 898 NVEKHLEDVGLDREFgtHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIK----EYAGGVVIITHNDEFCRA 982
                  5677899999998753267899**********************************99888777665....567899******999875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0023      0.16      10      51 ..     457     497 ..     451     501 .. 0.84
   2 !   31.9   0.0   3.1e-10   2.2e-08     114     211 ..     542     638 ..     511     641 .. 0.87
   3 !   20.2   0.0   1.2e-06   8.2e-05       2      58 ..     691     748 ..     690     768 .. 0.92
   4 !   34.0   0.0   6.9e-11   4.9e-09     114     203 ..     895     983 ..     878     995 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0023
    TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                  +y +    L++ ++k+++g+ + l G   +Gkttl++ + + 
  MMETSP1174-20130828|22329_1 457 AYGT-KILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQE 497
                  5643.3469****************************99875 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 3.1e-10
    TIGR02673 114 iqkrveevlelvgledka.kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                    k v+++l  v ++ k+ +   ++lsgG + + a+aRa++ k ++ll DePt  lD  + + + d l  l++  +t i ++hd+ +++ v +++l+++
  MMETSP1174-20130828|22329_1 542 SAKDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN--VTAICVSHDSGFLDDVCTHILQID 638
                  457899999*****99983566799******************************************988865..799999********9999999886 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 1.2e-06
    TIGR02673   2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGe 58 
                  +++e+vs +y+ +++ +++ ++++++ ++ +  +G+ GaGk+t++k l+g  +ps+G+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  689*******9778889***************************************97 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 6.9e-11
    TIGR02673 114 iqkrveevlelvgledka..kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv 203
                  ++++ve+ le vgl+     +   ++lsgG + +v i  a+ n+P++++ DePt  lD e      +l ++++++   v++ th+ e+++++
  MMETSP1174-20130828|22329_1 895 TTNNVEKHLEDVGLDREFgtHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLG---ALANAIKEYAGGVVIITHNDEFCRAI 983
                  56899*********987521556789********************************87655...5566677777789999***9998876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.016       1.1     338     382 ..     450     495 ..     416     506 .. 0.79
   2 !   44.2   0.1   3.2e-14   2.2e-12     462     529 ..     556     623 ..     542     624 .. 0.84
   3 !   29.0   0.0   1.3e-09   9.1e-08     327     391 ..     683     748 ..     663     764 .. 0.90
   4 !   24.2   0.0   3.6e-08   2.5e-06     460     529 ..     907     976 ..     892     977 .. 0.76
   5 ?   -2.6   0.0       4.9   3.5e+02     490     506 ..    1015    1031 ..    1013    1036 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.016
    TIGR02868 338 rdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlalla 382
                  +d ++    + +  l++ +++l+ G++  ++G   +GK+tL+  +a
  MMETSP1174-20130828|22329_1 450 ADCEFTLAYGTKiLLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  45555544444448999************************98765 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 3.2e-14
    TIGR02868 462 dtklgegg.arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  +tk+ ++g ++lSGG r +lalARa+l +a++llLDEPt hLD+   +  ++d l ++++ t + v+h+
  MMETSP1174-20130828|22329_1 556 STKMLDDGvSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVK-WVKDYLIGLTNVTAICVSHD 623
                  67776666368********************************98655.56777778888888888886 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.3e-09
    TIGR02868 327 aaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGe 391
                    +++k+ ++++++s++yp +++  ++g++++++  +rv  vG+ GaGKst+++ l+g ++p++G+
  MMETSP1174-20130828|22329_1 683 VKSKGKALMKMENVSYRYPINDHfTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  4455788899************99****************************************97 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 3.6e-08
    TIGR02868 460 Gldtklgeg..garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvthr 529
                  Gld + g++   ++lSGG++ ++++  a+ ++  v++LDEPt  LD e   +l +++    ++++  vv++th+
  MMETSP1174-20130828|22329_1 907 GLDREFGTHyrMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAI----KEYAggVVIITHN 976
                  66666655411568********************************98866655555....5555559999997 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 4.9
    TIGR02868  490 apvllLDEPtehLDaet 506 
                    +v+  DEPte +Da  
  MMETSP1174-20130828|22329_1 1015 QKVVQTDEPTEMIDASG 1031
                   678889********975 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0013     0.089       9      48 ..     455     494 ..     450     506 .. 0.92
   2 !   21.5   0.0   4.1e-07   2.9e-05     130     211 ..     563     643 ..     537     668 .. 0.79
   3 !   23.2   0.0   1.2e-07   8.6e-06      18      58 ..     708     748 ..     691     781 .. 0.81
   4 !   40.2   0.0   8.3e-13   5.9e-11     109     207 ..     894     992 ..     878    1058 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0013
    TIGR03522   9 sklygkqkaldevsfeaekGeivGflGPnGaGkstlmkil 48 
                  +  yg++  l +  ++ ++G+  G+lG n +Gk+tlm+ +
  MMETSP1174-20130828|22329_1 455 TLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  678**********************************966 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 4.1e-07
    TIGR03522 130 kigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiv 211
                   ++ ls G+r +  la+a+l + ++l+ldePt  ld  ++  +++ +  +++  t i  +h    ++ +c +++ i+  k+ 
  MMETSP1174-20130828|22329_1 563 GVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNV-TAICVSHDSGFLDDVCTHILQIDSLKLN 643
                  5899********************************99999999888877765.4555557778888888888888877764 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.2e-07
    TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGs 58 
                  +  ++ ++   + vG +GPnGaGkst++k ltg ++++ G+
  MMETSP1174-20130828|22329_1 708 ITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  55667777778889************************998 PP

  == domain 4    score: 40.2 bits;  conditional E-value: 8.3e-13
    TIGR03522 109 klkkrveelielvGlkae..qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiink 207
                  +  ++ve+ +e vGl +e  +h +++als G + +v + +a+  +P+v+ildePt  ld + l ++ + ike a    v++ th     +a+c +  +i+k
  MMETSP1174-20130828|22329_1 894 LTTNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG--GVVIITHNDEFCRAICPERWVIEK 992
                  56789***********99667***************************************************986..577779*9999*****87766665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.8e-05    0.0034       6      46 ..     456     496 ..     452     501 .. 0.90
   2 !   39.1   0.0   1.6e-12   1.2e-10     115     197 ..     546     627 ..     533     637 .. 0.85
   3 ?    5.9   0.0     0.024       1.7       9      53 ..     703     747 ..     693     773 .. 0.76
   4 !   32.0   0.0   2.5e-10   1.8e-08      94     196 ..     878     979 ..     866     985 .. 0.80
   5 ?   -1.9   0.0         6   4.3e+02     153     169 ..    1015    1031 ..    1013    1061 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.8e-05
    TIGR03608   6 kkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgl 46 
                    +++k +l+++++k+ +G+ + ++G   sGK+tl+  +++
  MMETSP1174-20130828|22329_1 456 LAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ 496
                  57899******************************998885 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 1.6e-12
    TIGR03608 115 kkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpeva 197
                  + ++l +v + +k l+  + +lsgG + ++alar++l +++++l DEPt  LD  n + v ++l  l+  + t i+v Hd+   
  MMETSP1174-20130828|22329_1 546 VRDMLLSVHFsTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT--NVTAICVSHDSGFL 627
                  566777888867788999**********************************************9986..67999****98543 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.024
    TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsg 53 
                  +d+  ++ + ++++  + v  vG  G+GKst++  l+   ++++g
  MMETSP1174-20130828|22329_1 703 NDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  56666777888888899999*************988655445545 PP

  == domain 4    score: 32.0 bits;  conditional E-value: 2.5e-10
    TIGR03608  94 eenlelalklkkkskkekekkkkevlekvglekk..lkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                  ++  ++a+k     +  ++++++++le+vgl+++  ++ ++  lsgG+k +v +  ++  ++++++ DEPt  LD+++  ++ + +ke       ++i+tH+ e 
  MMETSP1174-20130828|22329_1 878 STDQKIAMKSGMYIRPLTTNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE---YAGGVVIITHNDEF 979
                  55566777777777777788999********65512677899*********************************9998877766655...556788999*9875 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 6
    TIGR03608  153 selilADEPtgsLDkkn 169 
                    +++  DEPt  +D+  
  MMETSP1174-20130828|22329_1 1015 QKVVQTDEPTEMIDASG 1031
                   56777888888888653 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.6e-05    0.0046       9      48 ..     457     496 ..     452     503 .. 0.91
   2 !   36.9   0.0     8e-12   5.6e-10      85     206 ..     522     639 ..     505     657 .. 0.83
   3 !   13.4   0.0   0.00013     0.009       4      58 ..     694     750 ..     691     761 .. 0.82
   4 !   24.4   0.0   5.3e-08   3.7e-06     108     191 ..     896     977 ..     874    1002 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.6e-05
    TIGR00968   9 rfGdfqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                   +G+   l++ +++++ Gs  +llG   sGk+tl+r ia 
  MMETSP1174-20130828|22329_1 457 AYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ 496
                  6999999*******************************95 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 8e-12
    TIGR00968  85 khltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
                   hlt +d +    +i+  d    k+  + ll++   +k+ d   s lsGG r ++alara+ ++ ++llldep   ld    k ++ +l  l    +vt++ v+hd     +v  +i  ++ 
  MMETSP1174-20130828|22329_1 522 SHLTCTDYVLADERIQG-DGISAKDVRDMLLSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHDSGFLDDVCTHILQIDS 639
                  67777777766666654.4455666667888888889999***************************************99999999998885...69********9988888888876655 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 0.00013
    TIGR00968   4 anvskrf..GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGril 58 
                  +nvs r+   d  ++  + ++v   s v+ +Gp G+Gkst+++ ++G  +p +G+ +
  MMETSP1174-20130828|22329_1 694 ENVSYRYpiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRW 750
                  6666666333556677888999999**********************9999999866 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 5.3e-08
    TIGR00968 108 kakveellelvqle.klgdryp.sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq 191
                   ++ve+ le v+l+ ++g +y  + lsGGq+ +v +  a+  +p+v++ldep   ld +    l + ++    e     v++th+ 
  MMETSP1174-20130828|22329_1 896 TNNVEKHLEDVGLDrEFGTHYRmNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIK----EYAGGVVIITHND 977
                  5789999999999736999996488*******************************9544333333333....3344455666655 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.1e-06   0.00029       6      47 ..     454     495 ..     449     501 .. 0.92
   2 !   26.6   0.0   1.1e-08   7.6e-07     122     205 ..     557     637 ..     521     656 .. 0.76
   3 !   18.2   0.0     4e-06   0.00029      12      56 ..     704     748 ..     691     766 .. 0.81
   4 !   25.1   0.0   3.1e-08   2.2e-06     129     207 ..     918     992 ..     910    1019 .. 0.84
   5 ?   -2.3   0.0       7.7   5.5e+02     151     179 ..    1016    1045 ..    1009    1048 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.1e-06
    TIGR03410   6 levaYgesevlrdvslevekgevvavlGrngvGkttllkalv 47 
                   ++aYg+  +l++ ++++++g+   +lG n  Gkttl++++ 
  MMETSP1174-20130828|22329_1 454 FTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  6789***********************************996 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.1e-08
    TIGR03410 122 kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvl 205
                  ++ml+     LsGG + +la+aRa++ +  +llLDePt+ +    +k +++ +  l++   ++ + v +   f  ++  ++l +
  MMETSP1174-20130828|22329_1 557 TKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN---VTAICVSHDSGFLDDVCTHILQI 637
                  4566667789*****************************9997777777777766655...55566666666666666665555 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 4e-06
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56 
                  +   +++++++v+ ++ v  +G ng+Gk+t++k+l+g ++ ++G+
  MMETSP1174-20130828|22329_1 704 DHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  445689999****9999999*********************9996 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 3.1e-08
    TIGR03410 129 gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvler 207
                     LsGGq+ ++ i+ a+  +P++++LDePt+ +    +  ++++ike a     +++++ ++ +f++++  + +v+e+
  MMETSP1174-20130828|22329_1 918 MNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG----GVVIITHNDEFCRAICPERWVIEK 992
                  567******************************999988888888877655....688888888999998888777775 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 7.7
    TIGR03410  151 klllLDePteGiqPs.iikeiekvikelak 179 
                   k++  DePte i  s  +++++++ k+l+k
  MMETSP1174-20130828|22329_1 1016 KVVQTDEPTEMIDASgNVTKVKAAPKKLSK 1045
                   77888******9987346777777666665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.5   5.1e-12   3.6e-10       9     197 ..     457     637 ..     450     651 .. 0.79
   2 !   22.9   0.0   1.8e-07   1.2e-05       4      56 ..     694     748 ..     691     767 .. 0.84
   3 !   25.7   0.0   2.5e-08   1.7e-06      95     177 ..     889     972 ..     833     979 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 5.1e-12
    TIGR03740   9 kfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtll..lglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGii 197
                  +++ + +++n ++k+++ s ygllG n +Gk+tl++ ++           ++g + +  +l+++ +  +      +lt ++ +     +   g++ + + ++l  v+++++     ++ +s G + +l +a a+l k ++l+ldePtn ld + ++ +++ +  +++  +t i  sh    ++ ++ hi  i
  MMETSP1174-20130828|22329_1 457 AYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ--------EQIEGFPPA-TELRSVFVEADILGELSHLTCTDYVLADERIqgDGISAKDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN--VTAICVSHDSGFLDDVCTHILQI 637
                  7899999****************************98763........245665543.5677776666666667899999999876555116899********99999765416789****************************************9998877765..56666666655555555555555 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.8e-07
    TIGR03740   4 knlskkf..kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGe 56 
                  +n+s ++  +++  +  ++++v  +s  g +GpnGaGkst++k ltG +++++G 
  MMETSP1174-20130828|22329_1 694 ENVSYRYpiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  5666665224556778889999999999**********************99985 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 2.5e-08
    TIGR03740  95 tlllglpesrieevlkivdlent..ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitv 177
                    ++ l ++++e+ l+ v+l+ +  +  + + +s G k ++ i  a+ n+P+++ildePtn ld   +  l + ik +   G+ +
  MMETSP1174-20130828|22329_1 889 MYIRPLTTNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG-GVVI 972
                  45677889999999****99887224568899999******************************999999999998863.4443 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.037       2.6      14      51 ..     459     496 ..     452     502 .. 0.87
   2 !   27.1   0.0   9.3e-09   6.6e-07     117     213 ..     544     639 ..     507     642 .. 0.80
   3 !   24.0   0.0   8.1e-08   5.7e-06       2      61 ..     691     750 ..     690     762 .. 0.94
   4 !   30.4   0.0   9.2e-10   6.5e-08     117     200 ..     897     979 ..     884     993 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.037
    TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilg 51 
                  +++  l+n ++k+ +G+   l G   +Gk+tl++ i +
  MMETSP1174-20130828|22329_1 459 GTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQ 496
                  4566799***************************9876 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 9.3e-09
    TIGR00960 117 ervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlsk 213
                  + v+  l  v ++ k  ++ v +lsgG + ++a+ara++ k  +ll dePt  ld    + + + l     + +t +  +hd  ++++   ++l++++
  MMETSP1174-20130828|22329_1 544 KDVRDMLLSVHFSTKMLDDGVsTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIG--LTNVTAICVSHDSGFLDDVCTHILQIDS 639
                  45677788888888888776438*************************************99999865..5678999***********9999998865 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 8.1e-08
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkir 61 
                  +k+e+vs +y+   + ++ ++tv+++  + v  vG+ GaGkst++k ++g  +ps+G  +
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRW 750
                  789*****************************************************9866 PP

  == domain 4    score: 30.4 bits;  conditional E-value: 9.2e-10
    TIGR00960 117 ervsaalekvGlkdk..akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenl 200
                  + v++ le vGl      ++    lsgG++ +v i  a+ n+P++++ dePt  ld+e       l + +++    v++ th+ ++
  MMETSP1174-20130828|22329_1 897 NNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGA---LANAIKEYAGGVVIITHNDEF 979
                  568899******876446888999********************************986544...456666667778888998776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00074     0.052       5      47 ..     453     495 ..     449     501 .. 0.90
   2 !   23.8   0.0   8.9e-08   6.3e-06     108     168 ..     546     607 ..     533     621 .. 0.83
   3 !   15.8   0.0   2.5e-05    0.0018      16      56 ..     708     748 ..     695     777 .. 0.82
   4 !   35.0   0.0   3.5e-11   2.4e-09     105     186 ..     896     976 ..     869     982 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00074
    TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRila 47 
                  e++ + g++ ll++ +++l  G    + G n +GKttL+R +a
  MMETSP1174-20130828|22329_1 453 EFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  5677789999******************************998 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 8.9e-08
    TIGR01189 108 veealekvgLs.gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellae 168
                  v + l +v  s ++ d  v++Ls G + +lalar +l ka + +LDEPt  lD+  v+ +++
  MMETSP1174-20130828|22329_1 546 VRDMLLSVHFStKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKD 607
                  55555566554145678899*********************************999887765 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.5e-05
    TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGe 56 
                  ++g++++++    +  +GpnG+GK+t+++ l+G ++p++G+
  MMETSP1174-20130828|22329_1 708 ITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  56677777778889999**********************97 PP

  == domain 4    score: 35.0 bits;  conditional E-value: 3.5e-11
    TIGR01189 105 qktveealekvgLsgl..edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                  +++ve+ le+vgL+    ++  +++Ls Gqk ++ ++  + ++  + iLDEPt  lD+e+   la+++++++  gG+v+++ h+
  MMETSP1174-20130828|22329_1 896 TNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYA--GGVVIIT-HN 976
                  45899********875348999**********************************************9975..6777765.44 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0         1        71     354     384 ..     462     492 ..     421     496 .. 0.79
   2 !   33.7   0.0   4.8e-11   3.4e-09     466     533 ..     555     622 ..     548     656 .. 0.81
   3 !   29.1   0.0   1.2e-09   8.5e-08     313     396 ..     664     748 ..     643     751 .. 0.80
   4 !   20.7   0.0   4.3e-07     3e-05     473     525 ..     917     969 ..     899     978 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 1
    TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstlle 384
                    l++ ++++r G +  l G   +Gk+tl++
  MMETSP1174-20130828|22329_1 462 ILLHNTKMKLRRGSKYGLLGGNDSGKTTLMR 492
                  4788999**********************97 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 4.8e-11
    TIGR02204 466 ydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviah 533
                  ++t++ + gv tLsGG + ++a+ara+l +a iLLLde t+ Ld  + + v+  l  l  + t++ ++h
  MMETSP1174-20130828|22329_1 555 FSTKMLDDGVsTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT-NVTAICVSH 622
                  677766667637****************************************9998875.457777777 PP

  == domain 3    score: 29.1 bits;  conditional E-value: 1.2e-09
    TIGR02204 313 ellkaksdikaPa..qpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGa 396
                  el + k + + P+    + +  k ++ +++e+v+++yP   d+ ++ g+ ++v    +v  vGP GaGkst+++ l    +P++G+
  MMETSP1174-20130828|22329_1 664 ELKESKLKFTFPQpgPLEGVKSKGKALMKMENVSYRYPIN-DHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  55555555544441033455666777899*********86.69*********************************9999998885 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 4.3e-07
    TIGR02204 473 rgvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg 525
                  r   LsGGqk ++ i  a+ ++  +++Lde t+ Ld es  ++ +a++e   g
  MMETSP1174-20130828|22329_1 917 RMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGG 969
                  4568************************************9999999886654 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.098       6.9     458     497 ..     453     492 ..     438     495 .. 0.89
   2 !   36.8   0.0     5e-12   3.5e-10     568     643 ..     543     622 ..     510     643 .. 0.88
   3 !   21.5   0.0   2.2e-07   1.6e-05     452     509 ..     691     748 ..     667     750 .. 0.90
   4 !   22.4   0.0   1.1e-07   7.9e-06     587     643 ..     919     975 ..     916     977 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.098
    TIGR03797 458 tFrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                  +F+ +  ++  L++  +k + G   ++ G   sGK tl+r
  MMETSP1174-20130828|22329_1 453 EFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMR 492
                  577777888999***************************9 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 5e-12
    TIGR03797 568 eeDikamPmglh...TvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRiviAH 643
                  ++D+++m +++h    ++++g +tlSGG r +l +Ara+  k  ill+DE T  LD    + V + l  l +vt i + H
  MMETSP1174-20130828|22329_1 543 AKDVRDMLLSVHfstKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLtNVTAICVSH 622
                  79*********9664499**********************************************9998774799999999 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 2.2e-07
    TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGs 509
                  +++++v++rY  + + ++  ++++++    v+ vG+ G+GKSt+++ L g  +P++G+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  689***********************************************99999986 PP

  == domain 4    score: 22.4 bits;  conditional E-value: 1.1e-07
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                  ++lSGGQ+ +++i  a+ ++P+++++DE T  LD ++  +  +++++ +   ++i H
  MMETSP1174-20130828|22329_1 919 NALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITH 975
                  689*******************************************99999999999 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0013     0.088     480     526 ..     449     495 ..     428     499 .. 0.92
   2 !   27.2   0.0   3.3e-09   2.3e-07     607     682 ..     558     635 ..     524     656 .. 0.80
   3 !   24.8   0.0   1.8e-08   1.3e-06     475     535 ..     688     748 ..     642     765 .. 0.90
   4 !   20.3   0.0     4e-07   2.8e-05     615     671 ..     920     976 ..     909     992 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
    TIGR03796 480 lrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                  l++ +f+ +   + l+++ +++l+ G++  l Gg  sGk t+ + +a
  MMETSP1174-20130828|22329_1 449 LADCEFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  67788999999999****************************99776 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 3.3e-09
    TIGR03796 607 aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr.rRgctciivaHRLstiRd.cdeii 682
                  + l +g + lsGG r +l +ARa+  +  iL+lDE t  LD    k +++ l    ++t i v+H    + d c +i+
  MMETSP1174-20130828|22329_1 558 KMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIgLTNVTAICVSHDSGFLDDvCTHIL 635
                  345667789****************************************997526899******97666655455555 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 1.8e-08
    TIGR03796 475 sGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGe 535
                  +  ++++nv++ y + ++  i +++++++  +rv  vG+ G+Gkst+ k ++G  ep++G+
  MMETSP1174-20130828|22329_1 688 KALMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  456899***************************************************9996 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 4e-07
    TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                   lsGGq+ ++ i  a+ ++P ++ilDE t  LD e   a+ +++++    ++i++H 
  MMETSP1174-20130828|22329_1 920 ALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITHN 976
                  59*****************************************************95 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.52        37      18      51 ..     461     494 ..     453     498 .. 0.86
   2 !   34.0   0.0   6.5e-11   4.6e-09     120     217 ..     544     640 ..     523     643 .. 0.87
   3 ?    0.4   0.0       1.3        88      25      54 ..     712     741 ..     691     752 .. 0.75
   4 !   43.0   0.0   1.2e-13   8.4e-12      96     202 ..     876     977 ..     832     994 .. 0.82
   5 ?   -1.8   0.0       5.9   4.2e+02     161     181 ..    1016    1036 ..    1012    1052 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.52
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltli 51 
                  k +l++ +++++ g    l G   sGkttl+  i
  MMETSP1174-20130828|22329_1 461 KILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  5578999999999999999999********9766 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 6.5e-11
    TIGR02982 120 akaeelleavgleer.ldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedG 217
                  ++++++l +v +  + ld   + lsgG + ++a+ara+  + +++l dePt  ld    + v + l  l+   ++t + v hd+  l dv+  i+++++ 
  MMETSP1174-20130828|22329_1 544 KDVRDMLLSVHFSTKmLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHDSGFLdDVCTHILQIDSL 640
                  6789999999998762688899************************************999999998885...689999*****9884599999999875 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 1.3
    TIGR02982  25 nleiepgeiviltGpsGsGkttlltliggl 54 
                   ++++    v   Gp G+Gk t++  ++g 
  MMETSP1174-20130828|22329_1 712 TVQVSLSSRVGCVGPNGAGKSTMIKCLTGE 741
                  5556666667778*********99877665 PP

  == domain 4    score: 43.0 bits;  conditional E-value: 1.2e-13
    TIGR02982  96 sltaeqnvrmalelkeklsakeakakaeelleavgleerl..dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn 202
                  ++ + q + m   +  +     +++++e+ le vgl+ ++  +y+ + lsgGqk +v i  a+ ++P++v+ dePt  ld++s  ++ + +++ a      ++++th++
  MMETSP1174-20130828|22329_1 876 CMSTDQKIAMKSGMYIR---PLTTNNVEKHLEDVGLDREFgtHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYA----GGVVIITHND 977
                  56666777776666555...3345678899******9975338999************************************9888877776655....6799999976 PP

  == domain 5    score: -1.8 bits;  conditional E-value: 5.9
    TIGR02982  161 klvladePtaaldkksgrevv 181 
                   k+v +dePt  +d++   + v
  MMETSP1174-20130828|22329_1 1016 KVVQTDEPTEMIDASGNVTKV 1036
                   788999999999987654444 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00045     0.032       2      26 ..     470     494 ..     469     499 .. 0.90
   2 !   26.3   0.0   1.6e-08   1.1e-06      94     183 ..     546     634 ..     539     642 .. 0.81
   3 !   13.4   0.0   0.00014      0.01       7      36 ..     719     748 ..     713     766 .. 0.83
   4 !   25.5   0.0   2.9e-08   2.1e-06      95     174 ..     900     978 ..     883    1010 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00045
    TIGR03771   2 svdkGellgllGpnGaGkttllrai 26 
                  ++ +G   gllG n +Gkttl+r+i
  MMETSP1174-20130828|22329_1 470 KLRRGSKYGLLGGNDSGKTTLMRSI 494
                  67889999***************98 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.6e-08
    TIGR03771  94 vadalervkl.teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv 183
                  v+d l  v++ t++ d  v  lsGG r ++ +ara+ +k  +llldep   ld+   + + + ++ l++   + + ++hd     ++c  +
  MMETSP1174-20130828|22329_1 546 VRDMLLSVHFsTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN--VTAICVSHDSGFLDDVCTHI 634
                  556666666535788999********************************************9999975..44556677766666666555 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 0.00014
    TIGR03771   7 ellgllGpnGaGkttllrailglikvakGs 36 
                    +g +GpnGaGk+t+++++ g +++++G+
  MMETSP1174-20130828|22329_1 719 SRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  56899********************99997 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 2.9e-08
    TIGR03771  95 adalervkltel..adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdla 174
                  ++ le v l +   ++  +  lsGGq+ +v++  a+  +p++++ldep   ld  s   l++ ++e ag    +++ th+  
  MMETSP1174-20130828|22329_1 900 EKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG---GVVIITHNDE 978
                  555666666432113456789********************************9888888888888776...5677777654 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.41        29     348     379 ..     463     494 ..     448     497 .. 0.86
   2 !   29.7   0.0   7.2e-10   5.1e-08     468     527 ..     564     622 ..     543     642 .. 0.86
   3 !   23.4   0.0   5.5e-08   3.9e-06     329     389 ..     688     748 ..     676     751 .. 0.91
   4 !   21.7   0.0   1.9e-07   1.3e-05     457     515 ..     905     965 ..     894     976 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.41
    TIGR02203 348 aldsislkveaGevvalvGrsGsGkstlvnll 379
                   l++ ++k++ G    l G   sGk+tl++ +
  MMETSP1174-20130828|22329_1 463 LLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  5789999*********************8765 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 7.2e-10
    TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                   s LsGG R +la+aRa+l  a iL+LDe t  LD    + v++ L  l  + t++ ++h
  MMETSP1174-20130828|22329_1 564 VSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT-NVTAICVSH 622
                  468********************************999999999888774.677777777 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 5.5e-08
    TIGR02203 329 rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGe 389
                  +  ++++nv++ryp +d  ++ ++ ++v+   +v  vG+ G+Gkst+++ l+  +ep++G 
  MMETSP1174-20130828|22329_1 688 KALMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  456899***************************************************9995 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 1.9e-07
    TIGR02203 457 peGldtevGen..gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLer 515
                  + Gld e G+      LsGGq+ ++ i  a+  +  ++iLDe t  LD es  ++ +a+++
  MMETSP1174-20130828|22329_1 905 DVGLDREFGTHyrMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE 965
                  5688888887522578***********************************8888887765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0075      0.53       9      46 ..     457     494 ..     452     503 .. 0.86
   2 !   31.6   0.0   2.8e-10     2e-08     140     233 ..     560     651 ..     523     667 .. 0.79
   3 !   10.2   0.0   0.00095     0.067      13      47 ..     705     739 ..     691     754 .. 0.77
   4 !   26.8   0.0   8.2e-09   5.8e-07     131     231 ..     903    1006 ..     885    1045 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0075
    TIGR03005   9 rfgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                   +g+  +l++ ++++ +G k  l+G   sGk+t++r +
  MMETSP1174-20130828|22329_1 457 AYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  68888899***************************965 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 2.8e-10
    TIGR03005 140 adalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki.veeGkpde 233
                   d   + lsGG + ++a+ara+ l+  +ll+de+t  ld   v+ v + l  l   t++t + v+h+ gf  +++  +l  d  k+ + +G+  e
  MMETSP1174-20130828|22329_1 560 LDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL---TNVTAICVSHDSGFLDDVCTHILQIDSLKLnMHKGNLTE 651
                  4666789********************************88877777766665...78999***************9999988776234555555 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00095
    TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilm 47 
                     + g+ ++v+   +v  +Gp G+Gkst+++ l 
  MMETSP1174-20130828|22329_1 705 HFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLT 739
                  345689999**********************9986 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 8.2e-09
    TIGR03005  131 ldmvGladka.dalp.aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdk.....GkiveeGkp 231 
                   l+ vGl      ++    lsGGqk +v i  a+  +p+v+++de+t  ld e ++ + n +++ a      ++++th+  f r ++      +k     G++  +G p
  MMETSP1174-20130828|22329_1  903 LEDVGLDREFgTHYRmNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG----GVVIITHNDEFCRAICPERWVIEKmgdgiGRLDTQGDP 1006
                   566666554313443157*********************************999999999987775....67899999999998864433333323333455566665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.043       3.1      16      49 ..     462     495 ..     448     506 .. 0.85
   2 !   18.6   0.1   3.4e-06   0.00024     121     212 ..     543     634 ..     507     658 .. 0.84
   3 !   22.7   0.0   1.9e-07   1.4e-05      17      60 ..     707     750 ..     689     768 .. 0.78
   4 !   28.1   0.0   4.3e-09   3.1e-07     116     209 ..     891     984 ..     872     998 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.043
    TIGR03411  16 kalndlslsveegelrviiGpnGaGkttllDvit 49 
                    l++ ++++++g+   ++G n +Gkttl+  i+
  MMETSP1174-20130828|22329_1 462 ILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  5678899999********************8775 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.4e-06
    TIGR03411 121 kerieevleligLeek.adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekv 212
                  ++ ++++l  ++ ++k  d   ++Ls G +  L ++  ++ ++++lllDeP+  +   + + + + l  l++ +  + v hD +f++++ +++
  MMETSP1174-20130828|22329_1 543 AKDVRDMLLSVHFSTKmLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVT-AICVSHDSGFLDDVCTHI 634
                  56677777777776551688899*************99999*****************************8765.5678*******9998776 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 1.9e-07
    TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvl 60 
                   ++ ++++v+  +    +GpnGaGk+t++  +tG ++p+eG+  
  MMETSP1174-20130828|22329_1 707 TITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRW 750
                  566677777777766789***********************865 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 4.3e-09
    TIGR03411 116 lskeekerieevleligLeek..adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrela 209
                  ++  +++++e+ le +gL+++  ++ + ++Ls Gqk  + ig  + ++p++++lDeP+  + +e     a+ +ke a+   vv++ h+ ef r++ 
  MMETSP1174-20130828|22329_1 891 IRPLTTNNVEKHLEDVGLDREfgTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG--GVVIITHNDEFCRAIC 984
                  55667899**********998334567899****************************99987777777777776665..6999********9986 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.5   3.2e+02     410     437 ..     154     181 ..     134     193 .. 0.69
   2 ?    3.1   0.0     0.068       4.8     463     503 ..     454     494 ..     446     499 .. 0.85
   3 !   27.7   0.0   2.5e-09   1.8e-07     583     680 ..     555     654 ..     544     666 .. 0.82
   4 !   17.1   0.0   4.1e-06   0.00029     455     506 ..     690     741 ..     678     749 .. 0.87
   5 !   24.8   0.0   1.8e-08   1.3e-06     592     651 ..     919     976 ..     904     994 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.5
    TIGR01846 410 PvlrlaqlWqdfqqvkialerlGdilds 437
                   ++   q+ q++q   +a++ lG+ +++
  MMETSP1174-20130828|22329_1 154 MIFAGMQVEQNWQTRVVAINCLGTCVKT 181
                  344447999*************998765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.068
    TIGR01846 463 frykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                  f  +  +  +l+n +++++ G   G+ G   sGk+tl + +
  MMETSP1174-20130828|22329_1 454 FTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  55555667789**************************9865 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 2.5e-09
    TIGR01846 583 yetevgekGa.alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGki.vesGkheella 680
                  + t++ + G+ +lsGG r ++alara++ +  il+lde t  ld    + +++ l  ++ + t i+++h    + + + +il ++  k+ + +G+  e+++
  MMETSP1174-20130828|22329_1 555 FSTKMLDDGVsTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT-NVTAICVSHDSGFLDDvCTHILQIDSLKLnMHKGNLTEFVK 654
                  677777777527*****************************************999987.67999****98877643888888887766456666666665 PP

  == domain 4    score: 17.1 bits;  conditional E-value: 4.1e-06
    TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrl 506
                   +++en+ +ry  +    ++ +++++     +G vGp G+Gkst+ k l   
  MMETSP1174-20130828|22329_1 690 LMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGE 741
                  5789******************************************988655 PP

  == domain 5    score: 24.8 bits;  conditional E-value: 1.8e-08
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahr 651
                   alsGGq+ ++ +  a+ ++P+++ilde t  ld es  ++ + ++e + g  v+ii+h 
  MMETSP1174-20130828|22329_1 919 NALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGG--VVIITHN 976
                  68********************************************99876..7888886 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.015       1.1       7      46 ..     455     494 ..     451     508 .. 0.83
   2 !   28.5   0.0   1.7e-09   1.2e-07     418     506 ..     557     642 ..     544     667 .. 0.83
   3 !   15.9   0.0   1.1e-05   0.00077     276     341 ..     687     749 ..     674     754 .. 0.87
   4 !   22.1   0.0   1.4e-07     1e-05     426     499 ..     919     989 ..     900    1039 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.015
    TIGR03269   7 tkkfdglevlknisleleeGevlGilGksGaGksvllhll 46 
                  t ++  +  l+n +++l  G   G+lG   +Gk+ l++ +
  MMETSP1174-20130828|22329_1 455 TLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  67788888999999*******************9999754 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.7e-09
    TIGR03269 418 keildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGki 506
                  +++ld   ++ls G r ++ala+ ++ +  i++ldept  +d +  + v++ ++      + t + vshd  f+ +vc  +  + + k+
  MMETSP1174-20130828|22329_1 557 TKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL---TNVTAICVSHDSGFLDDVCTHILQIDSLKL 642
                  568899999***********************************999999998864...57899**************98766555554 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 1.1e-05
    TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                  g+ ++k+++vs ry   d   +    +++++v  +   G vG  GaGk+t+ k l G +ep++G  
  MMETSP1174-20130828|22329_1 687 GKALMKMENVSYRYPINDHFTI---TGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTR 749
                  6788999999999988887655...5778888888889*************************976 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 1.4e-07
    TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevc.draa 499
                  + ls G++ +v +   + ++p++vildept  +d  +  +    + +a +e     vi++h+ +f + +c +r  
  MMETSP1174-20130828|22329_1 919 NALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGA----LANAIKEYAGGVVIITHNDEFCRAICpERWV 989
                  679999999999999999************9999655555....556668899999999**999**999933443 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0057      0.41     477     518 ..     450     492 ..     438     498 .. 0.88
   2 !   37.0   0.0   4.5e-12   3.2e-10     597     670 ..     551     625 ..     537     657 .. 0.80
   3 !   17.2   0.0   4.2e-06    0.0003     471     531 ..     688     749 ..     681     779 .. 0.82
   4 !   10.9   0.0   0.00035     0.025     606     643 ..     915     952 ..     878     975 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0057
    TIGR01193 477 ndvsysyGygsev.ledislkikknekitlvGlsGsGkstlak 518
                   d ++   yg+++ l++ ++k+++ +k  l+G   sGk+tl++
  MMETSP1174-20130828|22329_1 450 ADCEFTLAYGTKIlLHNTKMKLRRGSKYGLLGGNDSGKTTLMR 492
                  5788999999998369*************************87 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 4.5e-12
    TIGR01193 597 lplGyqtelseea.ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrls 670
                  l++ ++t++ +++ s++sgG + +lalara+l ++++l+lde t +ld++  k + + l+ l++ t i v+h   
  MMETSP1174-20130828|22329_1 551 LSVHFSTKMLDDGvSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVTAICVSHDSG 625
                  3556888887776378********************************************************754 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 4.2e-06
    TIGR01193 471 ngdievndvsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGei 531
                  ++ +++++vsy+y  +++  +  ++++++  +++  vG  G+Gkst++k l +  ++++G+ 
  MMETSP1174-20130828|22329_1 688 KALMKMENVSYRYPINDHfTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTR 749
                  556899**********984599*****************************99999988874 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 0.00035
    TIGR01193 606 seeassisgGqkqrlalarallsdskvlildestsnld 643
                       ++sgGqk ++ +  a+  + +v+ilde t  ld
  MMETSP1174-20130828|22329_1 915 HYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD 952
                  234678*****************************999 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.5   2.5e+02     496     524 ..     463     491 ..     458     495 .. 0.87
   2 !   21.9   0.0   1.4e-07     1e-05     609     673 ..     557     623 ..     549     655 .. 0.75
   3 !   24.0   0.1   3.1e-08   2.2e-06     463     537 ..     673     748 ..     648     750 .. 0.78
   4 !   25.8   0.0   9.3e-09   6.6e-07     616     677 ..     919     980 ..     903     992 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 3.5
    TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStva 524
                  +l++  ++l+ G+   l G + sGK t +
  MMETSP1174-20130828|22329_1 463 LLHNTKMKLRRGSKYGLLGGNDSGKTTLM 491
                  6888999******************9976 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 1.4e-07
    TIGR00958 609 tevgekG.sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahr 673
                  t++ + G s lsgG + ++A+ARA++ k  +L+LDe t  LD+   + +++     ++ t + + h 
  MMETSP1174-20130828|22329_1 557 TKMLDDGvSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDyLIGLTNVTAICVSHD 623
                  55555553689********************************655555554667777777777775 PP

  == domain 3    score: 24.0 bits;  conditional E-value: 3.1e-08
    TIGR00958 463 qlelsgtlapknleGk..veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGq 537
                  +++++g l+  + +Gk  ++ ++Vs+ YP   +   + ++t +++  + v  VGP+G GKSt++  l    +P +G+
  MMETSP1174-20130828|22329_1 673 TFPQPGPLEGVKSKGKalMKMENVSYRYPINDHFT-ITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  4677787777777776337999********87665.68*****************************9999999985 PP

  == domain 4    score: 25.8 bits;  conditional E-value: 9.3e-09
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstv 677
                  + lsgGqk ++ i  A+  +P v+iLDe t  LD e+  +l +  +++   v++i+h  + +
  MMETSP1174-20130828|22329_1 919 NALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITHNDEFC 980
                  579*****************************************99**********986655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0012     0.083      11      49 ..     459     497 ..     449     501 .. 0.88
   2 !   16.7   0.1   1.1e-05    0.0008     133     210 ..     552     630 ..     539     649 .. 0.78
   3 !   14.7   0.0   4.5e-05    0.0032      10      50 ..     702     742 ..     691     749 .. 0.87
   4 !   32.7   0.0   1.5e-10     1e-08     121     233 ..     897    1010 ..     867    1019 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0012
    TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                    k +L++ ++++++G  + ++G n sGk tL++ +a +
  MMETSP1174-20130828|22329_1 459 GTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQE 497
                  5677899***************************99976 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.1e-05
    TIGR01978 133 deelleRslneG...fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerlleli 210
                  + +++++ l++G    sGG + +  + + +ll+ ++ +LDe    lDv  +k v + +  l +   + + ++h + +l+ +
  MMETSP1174-20130828|22329_1 552 SVHFSTKMLDDGvstLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN--VTAICVSHDSGFLDDV 630
                  44555555555522268**************************************99987764..4567788887777665 PP

  == domain 3    score: 14.7 bits;  conditional E-value: 4.5e-05
    TIGR01978  10 vedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  ++d+  ++g++++v+    +  +GpnG+Gkst+ k l+g+ 
  MMETSP1174-20130828|22329_1 702 INDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEV 742
                  78888899999****99999*****************9975 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 1.5e-10
    TIGR01978  121 kllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhv..lld..GrivksGdvelak 233 
                   ++++++le + ld+e+ + +  +  sGG k +  i   +  +P+++iLDe    lD ++l ++a+ +++++    +++iith++++ ++i P+   +  + d  Gr+ ++Gd e +k
  MMETSP1174-20130828|22329_1  897 NNVEKHLEDVGLDREFGTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYA---GGVVIITHNDEFCRAICPERWVIekMGDgiGRLDTQGDPEWMK 1010
                   568899999999****99999999***************************************99998886...69*****************866622444334777788877665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.4e-05    0.0067      12      50 ..     456     494 ..     449     502 .. 0.92
   2 !   19.9   0.0   9.3e-07   6.6e-05     130     174 ..     561     605 ..     539     635 .. 0.84
   3 !   16.1   0.0   1.3e-05   0.00091      15      60 ..     703     748 ..     689     760 .. 0.84
   4 !   20.9   0.0   4.6e-07   3.3e-05     129     209 ..     914     991 ..     887    1007 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 9.4e-05
    TIGR01288  12 ksygdkvvvndlsftiaagecfgllgpngagkstiarlv 50 
                   +yg k+++++  + + +g  +gllg n +gk+t+ r +
  MMETSP1174-20130828|22329_1 456 LAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  58*********************************9976 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 9.3e-07
    TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldpharhli 174
                  d  v++lsgg + +l+lara++   ++l+ldept  ld    + +
  MMETSP1174-20130828|22329_1 561 DDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWV 605
                  6789*********************************98765555 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.3e-05
    TIGR01288  15 gdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegk 60 
                   d+  +  ++  ++     g +gpngagkst+ + + g + p+eg+
  MMETSP1174-20130828|22329_1 703 NDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  5777788888899999999*************************97 PP

  == domain 4    score: 20.9 bits;  conditional E-value: 4.6e-07
    TIGR01288 129 advrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvle 209
                  ++ r+  lsgg k ++ + +a+ n+p+++ildept  ld  +   + + ++        +++ th  e +  +c    v+e
  MMETSP1174-20130828|22329_1 914 THYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEY---AGGVVIITHNDEFCRAICPERWVIE 991
                  5678999********************************87766665555443...3334555666666666666555555 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0094      0.66      14      51 ..     458     495 ..     448     502 .. 0.89
   2 !   28.6   0.0   2.4e-09   1.7e-07      99     194 ..     529     623 ..     509     634 .. 0.79
   3 !    9.5   0.0    0.0016      0.11      14      60 ..     702     748 ..     688     757 .. 0.81
   4 !   24.2   0.0   5.5e-08   3.9e-06     111     195 ..     895     977 ..     882     996 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0094
    TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriia 51 
                  +++   l++ ++++++g    lLG    GkttL+r ia
  MMETSP1174-20130828|22329_1 458 YGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  67777899999**************************9 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.4e-09
    TIGR03265  99 yGLknkklkreeva.erveelLelvglsgse.ekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                  y L +++++ + ++ + v+ +L  v +s++  +   + lsGG + ++aLara+ l+ ++LLLDeP   LD    + ++  l  l    +vt+i v hd
  MMETSP1174-20130828|22329_1 529 YVLADERIQGDGISaKDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL---TNVTAICVSHD 623
                  55555555555554145777777777776542566789********************************98877777777776...47999999998 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0016
    TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGa 60 
                  ++++ +++ + ++v+ +  v  +GP G Gk+t++++++G  ++++G+
  MMETSP1174-20130828|22329_1 702 INDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  4677788999999999999********************88888776 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 5.5e-08
    TIGR03265 111 vaerveelLelvglsgs.eekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                  ++++ve+ Le vgl+   ++ y  + lsGGq+ +v ++ a+  +P++++LDeP   LD      L + +k+    +    +++th+ 
  MMETSP1174-20130828|22329_1 895 TTNNVEKHLEDVGLDREfGTHYRmNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGV----VIITHND 977
                  56789999******865266675378********************************888888887777655433....4456655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.85        60      24      44 ..     475     495 ..     453     498 .. 0.80
   2 !   34.7   0.0   3.6e-11   2.5e-09      79     206 ..     510     638 ..     495     657 .. 0.79
   3 !   11.5   0.0   0.00039     0.028      15      52 ..     712     747 ..     702     752 .. 0.82
   4 !   21.5   0.0   3.5e-07   2.4e-05     129     166 ..     918     955 ..     903    1039 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.85
    TIGR02142  24 gvtalFGrsGsGktslirlia 44 
                     +l G   sGkt+l+r ia
  MMETSP1174-20130828|22329_1 475 SKYGLLGGNDSGKTTLMRSIA 495
                  56789999**********998 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 3.6e-11
    TIGR02142  79 yvFqeArLFpHlsvrenLrYGlkraraeerriseekvielL.gi...ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
                   vF eA +   ls  +   Y l + r +   is + v ++L ++    ++l+  +++LsGG + + a++RA+L + ++Ll+DeP   LD    k +  yL  l++ +    + vsH+   +  +  +++ ++
  MMETSP1174-20130828|22329_1 510 SVFVEADILGELSHLTCTDYVLADERIQGDGISAKDVRDMLlSVhfsTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVTA---ICVSHDSGFLDDVCTHILQID 638
                  588888888888888888888888888887888888888762332224689999**********************************************99987655...567888766666666666555 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00039
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdeg 52 
                  +v+++l++  +++  G  G+Gk+++i++++G + p+eg
  MMETSP1174-20130828|22329_1 712 TVQVSLSS--RVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  44455554..8999*****************9999988 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 3.5e-07
    TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekr 166
                   + LsGG k +v ig A+  +P+++++DeP   LD+++
  MMETSP1174-20130828|22329_1 918 MNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRES 955
                  689********************************865 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0     0.001     0.074      19      57 ..     456     494 ..     446     497 .. 0.88
   2 !   22.6   0.0   1.8e-07   1.3e-05     129     229 ..     545     642 ..     537     669 .. 0.85
   3 !   10.6   0.0    0.0009     0.064      27      67 ..     708     748 ..     690     765 .. 0.87
   4 !   23.2   0.0   1.2e-07   8.7e-06     130     226 ..     899     992 ..     894    1020 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.001
    TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarll 57 
                   + + k +l+n +++l++G   +llG   +Gk+tl r +
  MMETSP1174-20130828|22329_1 456 LAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  56678889***************************9865 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.8e-07
    TIGR02769 129 riaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                   + ++l  v++++++ld   + lsGG   ++++ara+ ++  +++lde    ld+++   + + l  l +   ++ + ++hd    + ++ ++l +d  ++
  MMETSP1174-20130828|22329_1 545 DVRDMLLSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTN---VTAICVSHDSGFLDDVCTHILQIDSLKL 642
                  567899999**************************************************99999999976...566789*******999999987665444 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0009
    TIGR02769  27 ldnvslsleeGetvallGrsGaGkstlarlllGlekPakGe 67 
                  ++++ +++     v+ +G  GaGkst+ + l G  +P++G+
  MMETSP1174-20130828|22329_1 708 ITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  5667788888899*************************997 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 1.2e-07
    TIGR02769 130 iaellelvelrsevldkl.PrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvlde 226
                  +++ le v+l+ e   ++  + lsGGq  ++ i  a+  +P++++lde    ld+    +   l +++k+ +G  +++ith+ +  + ++ +  v+++
  MMETSP1174-20130828|22329_1 899 VEKHLEDVGLDREFGTHYrMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGA---LANAIKEYAG-GVVIITHNDEFCRAICPERWVIEK 992
                  6778999***999877761578********************************875433...3445555555.6799****9***999988777765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.053       3.8      24      55 ..     464     495 ..     454     500 .. 0.89
   2 !   30.8   0.0   5.6e-10     4e-08     125     222 ..     542     637 ..     520     639 .. 0.85
   3 !   12.9   0.0   0.00017     0.012      24      68 ..     708     752 ..     699     772 .. 0.82
   4 !   17.8   0.0   5.4e-06   0.00038     145     216 ..     916     984 ..     884     992 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.053
    TIGR02324  24 lkevsleveaGelvalsGksGaGkstllksly 55 
                  l++ +++++ G    l G   +Gk tl++s+ 
  MMETSP1174-20130828|22329_1 464 LHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  678999***********************995 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 5.6e-10
    TIGR02324 125 arakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrelev 222
                  +++ ++++l  ++ + ++     +t sGG + ++ +ara++ +  iLLLdePt  Ld  n k v + +  +  + ++ i + hd    + v+++ l++
  MMETSP1174-20130828|22329_1 542 SAKDVRDMLLSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL--TNVTAICVSHDSGFLDDVCTHILQI 637
                  56778899999999999999999*****************************************9988665..4577788889988888888877765 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00017
    TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvr 68 
                  ++ ++++v+    v   G+ GaGkst++k+l ++  p+ g+ + +
  MMETSP1174-20130828|22329_1 708 ITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRWAH 752
                  5667788888899999*****************999999887665 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 5.4e-06
    TIGR02324 145 laPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelva 216
                  +  +  sGG k +v i  a+  +  +++LdePt  Ld         l + +k+    ++ i h++e  ++++
  MMETSP1174-20130828|22329_1 916 YRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLG---ALANAIKEYAGGVVIITHNDEFCRAIC 984
                  556789**************99777899********877766...555666666667777888766555444 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1     3e-12   2.1e-10      15     200 ..     455     624 ..     450     651 .. 0.82
   2 ?    6.3   0.0     0.013       0.9       9      64 ..     691     748 ..     684     758 .. 0.76
   3 !   17.8   0.0   4.2e-06    0.0003     118     181 ..     898     963 ..     886    1003 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 3e-12
    TIGR03258  15 rvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyal..fphlkveenvafGlrarkqskaliaervadalklvqlsdaa.arlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                  ++ayg++++l++  +++  G    llG   sGkttl+r +a             + ++   pp     ++ v+   l  + hl+  + v    r +   +   a+ v d l  v +s        + lsGG + ++alara+ ++ d+llldep   ld    + v    k     l ++t ++v+hd 
  MMETSP1174-20130828|22329_1 455 TLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA-------------QEQIEGFPPATELRSVFVEADILgeLSHLTCTDYVLADERIQ--GDGISAKDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWV----KDYLIGLTNVTAICVSHDS 624
                  679***********************************986.............566777899876666666665554478999999887766654..5566689999******9997661456789********************************8654444....555567899********96 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.013
    TIGR03258   9 vvleslrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGr 64 
                  +++e+++ +y  +    +  +++++     +  +G+ G+Gk+t+++ ++G v+++ G+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPINdhFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  566777777754411455667777777788899********************98876 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 4.2e-06
    TIGR03258 118 rvadalklvqls.daaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveel 181
                   v + l  v+l  ++++++  + lsGGq+ +v +  a+  +p+v++ldep   ld +   ++ + +
  MMETSP1174-20130828|22329_1 898 NVEKHLEDVGLDrEFGTHYRmNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAI 963
                  56677778888536788886257*******************************976555444444 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.049       3.4      21      51 ..     464     494 ..     454     523 .. 0.89
   2 !   22.9   0.0   1.1e-07   7.7e-06     121     248 ..     546     673 ..     535     720 .. 0.77
   3 !   10.8   0.1   0.00053     0.037      24      61 ..     711     748 ..     688     752 .. 0.82
   4 !   26.7   0.0   7.7e-09   5.5e-07     121     216 ..     899     992 ..     892    1005 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.049
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv 51 
                  l+n ++ + +g  +g++g   +gk+tl+r +
  MMETSP1174-20130828|22329_1 464 LHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  78999999*********************87 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.1e-07
    TIGR02314 121 vtellalvglsdkk.dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel.iekgtvseifsh.pktelakkfirstldls 248
                  v ++l  v +s k  d   s lsgg + ++a+ara+  +  +ll de t  ld    + + + l  +    ++t + ++h+   +  +c ++  id+ +l + kg ++e   + p+++   ++ +s l++ 
  MMETSP1174-20130828|22329_1 546 VRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGL---TNVTAICVSHDSGFLDDVCTHILQIDSLKLnMHKGNLTEFVKKvPEARSYFELKESKLKFT 673
                  66666666666664378899************************************99999998766...489999*******************999885677888775543255555555555555555 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.00053
    TIGR02314  24 vslfvpkgqifgvigasgagkstlircvnllekptsga 61 
                  +++ v     +g +g  gagkst+i+c+    +p++g+
  MMETSP1174-20130828|22329_1 711 MTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  55666777789****************99888898885 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 7.7e-09
    TIGR02314 121 vtellalvglsdk.kdsypsn.lsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidk 216
                  v++ l  vgl       y  n lsggqk +v i  a+  +p+v++ de t  ld  +  ++ + +ke     +  +++ith+ +  + ic e  vi+k
  MMETSP1174-20130828|22329_1 899 VEKHLEDVGLDREfGTHYRMNaLSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEY----AGGVVIITHNDEFCRAICPERWVIEK 992
                  55666667776441345665549*******************************87766666666654....456889*************9999986 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   1.3e-10     9e-09      55     160 ..     522     623 ..     479     626 .. 0.73
   2 ?    5.4   0.0     0.025       1.7       2      26 ..     724     748 ..     723     755 .. 0.93
   3 !   24.6   0.0   3.7e-08   2.6e-06      78     162 ..     896     978 ..     875    1009 .. 0.75

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.3e-10
    TIGR01187  55 PhmtveenvafgLkmrkvpkaeikervkeaLelvqle.efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                   h+t ++ v    ++++ + +  ++ v+++L  v+++ ++ +  +s lsGG r ++alara+  k +iLLlDep   LD    + ++  l  l     +t + v hD
  MMETSP1174-20130828|22329_1 522 SHLTCTDYVLADERIQGDGIS--AKDVRDMLLSVHFStKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHD 623
                  566666655555555555444..34599*******962688999***********************************987777777766665...4788888888 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.025
    TIGR01187   2 LGpsGsGkttlLrllaGleeldsGk 26 
                  +Gp G+Gk+t+++ l G  e+++G 
  MMETSP1174-20130828|22329_1 724 VGPNGAGKSTMIKCLTGEVEPSEGT 748
                  69*******************9995 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 3.7e-08
    TIGR01187  78 kervkeaLelvqle.efakr.kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqe 162
                  ++ v++ Le v l+ ef+++ +++ lsGGq+ +v +  a+ ++P++++lDep   LD++    +    +a++e  G  vv++th+ e
  MMETSP1174-20130828|22329_1 896 TNNVEKHLEDVGLDrEFGTHyRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGAL---ANAIKEYAG-GVVIITHNDE 978
                  5668888888888636776525778********************************7544444...445555555.4566777765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05    0.0014      29      79 ..     452     502 ..     424     522 .. 0.81
   2 !   21.8   0.0   1.9e-07   1.3e-05     157     222 ..     558     620 ..     544     634 .. 0.83
   3 ?    1.3   0.0       0.3        21      56      73 ..     723     740 ..     703     748 .. 0.87
   4 !   21.9   0.0   1.7e-07   1.2e-05     140     213 ..     898     967 ..     875     976 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.9e-05
    TIGR00955  29 ealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                  + ++   ++k ll+n   +++ G    +lG+  +GKtTL+  +a+ + +g 
  MMETSP1174-20130828|22329_1 452 CEFTLAYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQEQIEGF 502
                  334444499***********************************9988775 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.9e-07
    TIGR00955 157 rigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvilt 222
                  ++ ++g v +lSgG r +lala  +l +  +L++DEPT  LD +  + v   L +l++    +i++
  MMETSP1174-20130828|22329_1 558 KMLDDG-VSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVT--AICV 620
                  555444.789********************************999999988888887653..4555 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.3
    TIGR00955  56 vlGsSGaGKtTLlnalaf 73 
                   +G+ GaGK+T+++ l+ 
  MMETSP1174-20130828|22329_1 723 CVGPNGAGKSTMIKCLTG 740
                  579**********99975 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 1.7e-07
    TIGR00955 140 rveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkla 213
                   ve+ le++gL        g+  r+ +lSgG++ ++ ++  + ++P+++++DEPT  LD  s   + +++k+ a
  MMETSP1174-20130828|22329_1 898 NVEKHLEDVGLDR----EFGTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYA 967
                  5666666666654....4566677999********************************999888888888776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.4        28      12      45 ..     462     495 ..     453     506 .. 0.82
   2 !   21.8   0.0   3.7e-07   2.6e-05     121     162 ..     559     600 ..     532     646 .. 0.74
   3 !   16.9   0.0   1.2e-05   0.00081      10      56 ..     704     750 ..     691     759 .. 0.77
   4 !   19.7   0.0   1.5e-06   0.00011      93     202 ..     883     990 ..     858     997 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.4
    TIGR01277  12 hlplefdlsveaGervailGesGaGkstllnlia 45 
                   l  + ++++ +G +  +lG   +Gk+tl+  ia
  MMETSP1174-20130828|22329_1 462 ILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  45556678899*******************9988 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 3.7e-07
    TIGR01277 121 ylerlpeelsGGqrqrvalarclvrekpillldepfsaldpk 162
                  +l+     lsGG r ++alar ++ +  illldep   ld +
  MMETSP1174-20130828|22329_1 559 MLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVM 600
                  45666678******************************9965 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.2e-05
    TIGR01277  10 ykhlplefdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                  ++     + ++v+   rv  +G+ GaGkst+++ ++G +ep +G+ +
  MMETSP1174-20130828|22329_1 704 DHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTRW 750
                  344445567889999****************************9866 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 1.5e-06
    TIGR01277  93 lGlkpglklnavqkekvedvarqvGiadyle..rlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvv 202
                  + +k g+ +  +  ++ve+  ++vG++  +      + lsGGq+ +v +   + ++  +++ldep   ld+    e l  +++  +e    ++++th+ +  +ai  +  v+
  MMETSP1174-20130828|22329_1 883 IAMKSGMYIRPLTTNNVEKHLEDVGLDREFGthYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDR----ESLGALANAIKEYAGGVVIITHNDEFCRAICPERWVI 990
                  45677777888888888899999999876541134689***************99999*******999984....778888899999999*******999888887665555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0009     0.064      10      47 ..     457     494 ..     448     501 .. 0.86
   2 !   20.3   0.0   4.7e-07   3.3e-05     387     444 ..     550     607 ..     523     655 .. 0.71
   3 !   10.6   0.0   0.00042      0.03      12      49 ..     703     740 ..     690     751 .. 0.79
   4 !   18.1   0.0   2.3e-06   0.00016     105     215 ..     883     991 ..     874    1028 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0009
    TIGR02633  10 kfggvkaldnidlklraGeivslcGenGaGkstlmkvl 47 
                   +g    l+n ++klr G   +l G n +Gk+tlm+ +
  MMETSP1174-20130828|22329_1 457 AYGTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSI 494
                  56677789***************************865 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 4.7e-07
    TIGR02633 387 ikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyk 444
                  +  ++  t   d  +++lsGG + k  la+ +ll+  +l+ldept  +dv     +  
  MMETSP1174-20130828|22329_1 550 LLSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKD 607
                  5556666777777899*********************************975444443 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00042
    TIGR02633  12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  ++  ++ ++++++     v+  G nGaGkst++k l+g
  MMETSP1174-20130828|22329_1 703 NDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTG 740
                  5666789999*************************997 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 2.3e-06
    TIGR02633 105 itlkGglmdydamvlrakellrelkldasnvtrp.vsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvir 215
                  i++k g+   +  ++ +++ l+++ ld +  t+  ++ l +Gq+  v i  a+  q +++ildep+  l ++    l + i++        v i+h  e  +a++ +  vi 
  MMETSP1174-20130828|22329_1 883 IAMKSGMYIRPLTTNNVEKHLEDVGLDREFGTHYrMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAG---GVVIITHNDEFCRAICPERWVIE 991
                  66666777777777888888888888887666541566788888889999999999999999999999999888888888877643...44678888888888887776664 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         3   2.1e+02       2      32 ..     465     495 ..     464     501 .. 0.89
   2 !   25.7   0.0   2.2e-08   1.6e-06     108     174 ..     560     623 ..     534     635 .. 0.88
   3 ?    5.0   0.1     0.048       3.4       5      41 ..     712     748 ..     708     752 .. 0.85
   4 !   25.6   0.0   2.4e-08   1.7e-06      93     174 ..     897     976 ..     881     994 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 3
    TIGR01184   2 kdvdleikkgefislighsgcgkstllnlia 32 
                  ++ ++++++g    l+g    gk+tl+  ia
  MMETSP1174-20130828|22329_1 465 HNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  6788999*******************98876 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 2.2e-08
    TIGR01184 108 adkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                   d  ++ lsgg + ++a+ara+ ++ ++llldep   ld +  + +++ l+ ++   +vt++ v+hd
  MMETSP1174-20130828|22329_1 560 LDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHD 623
                  5667789*******************************************9986...5999999999 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.048
    TIGR01184   5 dleikkgefislighsgcgkstllnliaglekptsga 41 
                   ++++    +  +g  g gkst++  ++g  +p++g+
  MMETSP1174-20130828|22329_1 712 TVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  5566667778899*********************996 PP

  == domain 4    score: 25.6 bits;  conditional E-value: 2.4e-08
    TIGR01184  93 eiveehielvglre..aadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  + ve+h+e vgl +   ++ r++ lsgg k +v i  a+  +p++++ldep   ld   re+l   l + ++e    v+++th+
  MMETSP1174-20130828|22329_1 897 NNVEKHLEDVGLDRefGTHYRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD---RESLG-ALANAIKEYAGGVVIITHN 976
                  5699********873358999******************************99998...55554.5667778888889999996 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   3.1e-09   2.2e-07     463     535 ..     557     629 ..     532     670 .. 0.74
   2 !   15.1   0.0   2.1e-05    0.0015     298     390 ..     655     747 ..     639     755 .. 0.76
   3 !   11.0   0.0   0.00036     0.026     468     515 ..     917     964 ..     899     980 .. 0.88

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3.1e-09
    TIGR01192 463 tlvgerg.nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre 535
                  t++ + g + lsgg r +la+ara+l  a il+lde t  ldv     vkd +  l+ n t++ ++h    + +
  MMETSP1174-20130828|22329_1 557 TKMLDDGvSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT-NVTAICVSHDSGFLDD 629
                  5444444379***********************************999**9988875.6777778887666555 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 2.1e-05
    TIGR01192 298 qivearakledffdledsvkere..epadarelkn.vkgavefrdisfefa.nssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksg 390
                  ++ e     + +f+l++s  +    +p+ ++ +k+  k  ++++++s+ ++ n +  +  ++ ++     v  vgp gagk+t+i  l    +p++g
  MMETSP1174-20130828|22329_1 655 KVPE----ARSYFELKESKLKFTfpQPGPLEGVKSkGKALMKMENVSYRYPiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  3333....44688888886554411556665554413556899*******86788899******************************999999888 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00036
    TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid 515
                  r n lsgg++ ++ i  a+  +  +++lde t  ld e+   + +ai 
  MMETSP1174-20130828|22329_1 917 RMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIK 964
                  7899**************999999*************99888888775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.13       9.3       4      40 ..     459     495 ..     457     505 .. 0.89
   2 !   22.1   0.0   2.1e-07   1.5e-05     110     189 ..     546     623 ..     511     632 .. 0.84
   3 !    9.5   0.0    0.0015       0.1      23      49 ..     722     748 ..     688     754 .. 0.90
   4 !   17.4   0.0   5.7e-06    0.0004     112     207 ..     901     995 ..     884    1067 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.13
    TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrlln 40 
                  G+k+ +++ ++++  G  + ++G   sGk+tl+r + 
  MMETSP1174-20130828|22329_1 459 GTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  7778889999***********************9875 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.1e-07
    TIGR01186 110 alealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                   +++l  v +  +  d     lsGG + ++ lara+  + d+ll+de+   ld +  + ++d l+ l    + t + ++hd
  MMETSP1174-20130828|22329_1 546 VRDMLLSVHFsTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHD 623
                  567777788877788888899******************************************99996...4588889998 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.0015
    TIGR01186  23 viiGlsGsGkstlvrllnrliePtaGk 49 
                    +G+ G+Gkst+++ l   +eP++G 
  MMETSP1174-20130828|22329_1 722 GCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  568*********************996 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 5.7e-06
    TIGR01186 112 ealklvdl.eeyedryP.delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealr.l.gdrivilkaGe 207
                  + l  v+l  e+  +y  + lsGG++ +v +  a+ ++P ++++de+   ld   r++l   l +  k++   +v ith+ de  r +  +r vi k G+
  MMETSP1174-20130828|22329_1 901 KHLEDVGLdREFGTHYRmNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD---RESLG-ALANAIKEYAGGVVIITHN-DEFCRaIcPERWVIEKMGD 995
                  5688999*889998886378****************************9999...67765.4555566677788889987.5554422146666666665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.083       5.9       2      33 ..     464     495 ..     463     503 .. 0.87
   2 !   25.8   0.1   1.8e-08   1.3e-06     116     197 ..     557     635 ..     540     660 .. 0.83
   3 ?    0.5   0.1         1        72       5      35 ..     711     741 ..     707     751 .. 0.78
   4 !   20.6   0.0   7.2e-07   5.1e-05     100     185 ..     896     976 ..     875    1005 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.083
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalail 33 
                   ++ +++l+rg   +l+G   sGk++   +i 
  MMETSP1174-20130828|22329_1 464 LHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  68899********************9887775 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.8e-08
    TIGR02770 116 eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                   ++l+     lsGG   ++ +a a+ll+a +l+ DePt  lDv++ + v ++l  l++ +    + ++hD g +  +  +++
  MMETSP1174-20130828|22329_1 557 TKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVT---AICVSHDSGFLDDVCTHIL 635
                  5667777779*****99999999******************************9998754...5679***998887776665 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 1
    TIGR02770   5 vnlslkrgkvlalvGesGsGksltalailgl 35 
                  + +++     ++ vG  G+Gks+  + + g 
  MMETSP1174-20130828|22329_1 711 MTVQVSLSSRVGCVGPNGAGKSTMIKCLTGE 741
                  5667777778999*********998887765 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 7.2e-07
    TIGR02770 100 kelivealeavgLeeaeevlkkypf.elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                  ++ + + le+vgL+  +e  ++y    lsGG   +v+i  a+  ++ ++i DePt  lD       L  l +  ++ + g+++ith+
  MMETSP1174-20130828|22329_1 896 TNNVEKHLEDVGLD--REFGTHYRMnALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRE----SLGALANAIKEYAGGVVIITHN 976
                  56677889999998..66666675427********************************75....58889999999999*******7 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.078       5.5      35      71 ..     459     495 ..     451     499 .. 0.89
   2 !   30.6   0.1     5e-10   3.5e-08     156     224 ..     558     623 ..     536     649 .. 0.86
   3 ?   -2.5   0.0       5.7     4e+02      55      72 ..     723     740 ..     691     747 .. 0.81
   4 !    7.6   0.0    0.0051      0.36     143     196 ..     897     952 ..     846     959 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.078
    TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravn 71 
                  G+ +  +++ +++++G    l+G   sGk++l+r++ 
  MMETSP1174-20130828|22329_1 459 GTKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  666778999*************************986 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 5e-10
    TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                  +  d  v  lsGG + ++ lara+ ++adill+deP   ld +  + ++d l+ l    + t + vshd
  MMETSP1174-20130828|22329_1 558 KMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLT---NVTAICVSHD 623
                  455777899*********************************************97...6799*****9 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 5.7
    TIGR03415  55 lmGlsGsGkssllravng 72 
                   +G  G+Gks++++++ g
  MMETSP1174-20130828|22329_1 723 CVGPNGAGKSTMIKCLTG 740
                  46889********99876 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0051
    TIGR03415 143 krveeqlelvglae.Wadk.kvgelsGGmqqrvGlarafateadillmdePfsald 196
                  ++ve++le vgl+  + ++ +++ lsGG + +v +  a+  +  ++++deP   ld
  MMETSP1174-20130828|22329_1 897 NNVEKHLEDVGLDReFGTHyRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD 952
                  679999******852554415799***************************99888 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.74        52     466     500 ..     461     495 ..     456     497 .. 0.92
   2 !    8.6   0.0    0.0017      0.12     568     616 ..     551     599 ..     533     643 .. 0.75
   3 !   18.9   0.0   1.2e-06   8.7e-05     447     525 ..     685     764 ..     642     769 .. 0.79
   4 !   11.3   0.0   0.00025     0.018     581     639 ..     918     976 ..     888     981 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.74
    TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                  ++l+++ +++++ G++  ++G n  GK  l+R ++
  MMETSP1174-20130828|22329_1 461 KILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIA 495
                  68899999************************887 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
    TIGR00954 568 lereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsv 616
                  l    + +++ d    LsgG + ++a+AR +  k    +LDE t+ + v
  MMETSP1174-20130828|22329_1 551 LSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDV 599
                  4455566777888899****************************98765 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 1.2e-06
    TIGR00954 447 eaqdngikfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvygglltkpeegklFyvPqrP 525
                   + +  +k+en+    P +++  i  ++++v   + +  +GPnG GKs + + l ge+ P   g++   ++ ++ yv q+ 
  MMETSP1174-20130828|22329_1 685 SKGKALMKMENVSYRYPiNDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLtGEVEPSE-GTRWAHPNLRMAYVAQHA 764
                  55567899*********666788****************************99846777765.566666678999999975 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.00025
    TIGR00954 581 kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshr 639
                  ++ LsgG+k ++ +   ++ +P+ ++LDE t+ +  +  ++l +++ke+   ++ ++h 
  MMETSP1174-20130828|22329_1 918 MNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITHN 976
                  789*******************************9999999999999998888888886 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.9e-08   5.6e-06     752     832 ..     557     634 ..     544     655 .. 0.86
   2 !   15.7   0.0   5.8e-06   0.00041     631     709 ..     685     765 ..     675     774 .. 0.83
   3 ?    1.5   0.0      0.11       7.6     760     792 ..     920     952 ..     906     975 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 7.9e-08
    TIGR00957 752 teigekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdvii 832
                  t++ + gv  lsgg + +++lara+  +adi lld+p   +d    k + + +ig    l n t i v+h   +l +v   i
  MMETSP1174-20130828|22329_1 557 TKMLDDGVsTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIG----LTNVTAICVSHDSGFLDDVCTHI 634
                  66667787359*******************************************9....78999**********99886655 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5.8e-06
    TIGR00957 631 dgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegk..valkgsvayvpqqaw 709
                  + +   + ++n ++ +  ++  t+ g+t+++   + v  vg+ g gks+++ +l +e++  eg    + +  +ayv q a+
  MMETSP1174-20130828|22329_1 685 SKGKALMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGTrwAHPNLRMAYVAQHAF 765
                  4434556788899999999999****************************************9822345567899999987 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.11
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavd 792
                   lsggqk +v +  a++ +  + +ld+p   +d
  MMETSP1174-20130828|22329_1 920 ALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD 952
                  478888888888888888888888888876665 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26        18    1231    1264 ..     460     493 ..     440     500 .. 0.75
   2 !   27.6   0.0   1.5e-09     1e-07    1346    1415 ..     559     627 ..     546     665 .. 0.67
   3 !    5.6   0.0    0.0066      0.47     456     481 ..     722     747 ..     684     767 .. 0.56
   4 ?    3.4   0.0     0.029         2    1354    1397 ..     921     964 ..     910    1051 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.26
    TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsa 1264
                    + +l++  + +  g + gllg   sgk+tl+ +
  MMETSP1174-20130828|22329_1  460 TKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRS 493 
                   4556777778888888888888888888888755 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.5e-09
    TIGR01271 1346 vlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveal 1415
                   +l dg   ls g +  + lar++l ka illldep+ +ld + ++ ++  l   ++n t i   h    l
  MMETSP1174-20130828|22329_1  559 MLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLI-GLTNVTAICVSHDSGFL 627 
                   4566777777777777777777777777777777777777777776665553.56666666666655444 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.0066
    TIGR01271 456 avagstgsgkssllmmilgelepseg 481
                     g  g+gks+++  + ge+epseg
  MMETSP1174-20130828|22329_1 722 GCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  33455566666666666666666665 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.029
    TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlqiirktlk 1397
                   ls g k  + +  ++  + ++++ldep+ +ld  +l  + +++k
  MMETSP1174-20130828|22329_1  921 LSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIK 964 
                   45555555555555555556666666666666555555555555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021       1.5       7      50 ..     452     497 ..     446     518 .. 0.83
   2 !    8.5   0.0    0.0039      0.28     140     197 ..     565     622 ..     539     649 .. 0.79
   3 !   11.5   0.0   0.00046     0.033       4      57 ..     691     748 ..     688     764 .. 0.69
   4 ?    6.2   0.0      0.02       1.4     125     202 ..     901     981 ..     883    1005 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.021
    TIGR02323   7 selsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaar 50 
                   e++  yg+k+ ++  ++ l+ G   g++G   sGk+tl+ ++a++
  MMETSP1174-20130828|22329_1 452 CEFTLAYGTKILLHnTKMkLRRGSKYGLLGGNDSGKTTLMRSIAQE 497
                  5667778888777656667999*********************985 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0039
    TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                  +++sGG + +l +ar+++ +  ++++ ept  l  ++ + +    l+   ++++i v+h
  MMETSP1174-20130828|22329_1 565 STLSGGWRMKLALARAMLLKADILLLdEPTNHLDVMNVKWV-KDYLIGLTNVTAICVSH 622
                  789***************999999988****9955555543.34445555677777776 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00046
    TIGR02323   4 levselsksygskkgcrvsf....lypGevlgivGesGsGkstllkalaarlladaGe 57 
                  ++++++s  y  +  ++++     +     +g vG  G+Gkst++k+l++++ +++G+
  MMETSP1174-20130828|22329_1 691 MKMENVSYRYPINDHFTITGmtvqVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEGT 748
                  5555566555544444433211112234456899*********************997 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.02
    TIGR02323 125 kwlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavar 202
                  k le+v +d++     + +a+sGG + ++ i  ++  +p++v++ ept  l   +  l  l + ++e    v+i+th    +r
  MMETSP1174-20130828|22329_1 901 KHLEDVGLDREFGthyRMNALSGGQKVKVVIGAAMWNQPHVVILdEPTNYLD--RESLGALANAIKEYAGGVVIITHnDEFCR 981
                  56777777764222337789***********************99***9884..23344677788888888888888444455 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1        80    1962    1985 ..     471     494 ..     465     499 .. 0.86
   2 !   11.9   0.1   5.1e-05    0.0036    1016    1116 ..     522     621 ..     511     642 .. 0.80
   3 !    4.4   0.1    0.0096      0.68    1937    1990 ..     690     743 ..     680     753 .. 0.75
   4 !   16.0   0.0   3.1e-06   0.00022    1042    1132 ..     899     990 ..     891    1023 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.1
    TIGR01257 1962 vrpgecfgllgvngagktttfkml 1985
                   +r g  +gllg n +gktt ++ +
  MMETSP1174-20130828|22329_1  471 LRRGSKYGLLGGNDSGKTTLMRSI 494 
                   79999**************98765 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.1e-05
    TIGR01257 1016 hhltvaehilfyaqlkgrsweeaqlemeamledtglhhkr.neeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiims 1116
                    hlt ++++l   +++g        ++  ml    +  k  ++    lsgg + kl++a a++  a +++ldept  +d    + + d l+      +i +s
  MMETSP1174-20130828|22329_1  522 SHLTCTDYVLADERIQGDGISA--KDVRDMLLSVHFSTKMlDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDVMNVKWVKDYLIGLTNVTAICVS 621 
                   6888888888888888877654..35667777777777762556789*************************************999999988777666665 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0096
    TIGR01257 1937 ilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdtt 1990
                   ++++++++  y+ +   ++  + v v     +g +g ngagk+t +k ltg+  
  MMETSP1174-20130828|22329_1  690 LMKMENVSYRYPINDHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVE 743 
                   556666777777777777778888888888888888888888888888888765 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 3.1e-06
    TIGR01257 1042 meamledtglhhkrne..eaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriai 1132
                   +e  led gl          + lsgg + k+ +  a+  + +vv+ldept  +d  s  ++ + +  y  g  ii     +  a +  +r  i
  MMETSP1174-20130828|22329_1  899 VEKHLEDVGLDREFGThyRMNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKEYAGGVVIITHNDEFCRA-ICPERWVI 990 
                   677788888876654311456788888888888888888888888888888888888888888888888887776544333332.44455444 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0012     0.084     367     501 ..     474     598 ..     461     637 .. 0.74
   2 !   12.2   0.0   0.00015      0.01     336     396 ..     690     747 ..     674     751 .. 0.85
   3 ?   -0.3   0.0      0.91        65     463     532 ..     915     979 ..     894     983 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0012
    TIGR01194 367 GelvyivGenGcGkstliklllGlyipq.eGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqd 501
                  G    ++G+n  Gk+tl++ +    i        l    v ++  ++  +l     +dy l d+ +q   ++  s ++ +  l  + +    k+ d + s    ls G r +lal  a l +  +lllde +   d
  MMETSP1174-20130828|22329_1 474 GSKYGLLGGNDSGKTTLMRSIAQEQIEGfPPATELRSVFVEADILGELSHLT---CTDYVLADERIQ---GDGISAKDVRDMLLSVHFS--TKMLDDGVS---TLSGGWRMKLALARAMLLKADILLLDEPTNHLD 598
                  5555577888888888888776554422123444666777777777666664...56**********...8889999999998666655..567899999...6**************************877666 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00015
    TIGR01194 336 slelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeG 396
                   +++ +v y y+     + f++  + ++++    v  vG nG Gkst+ik l G   p eG
  MMETSP1174-20130828|22329_1 690 LMKMENVSYRYPIN---DHFTITGMTVQVSLSSRVGCVGPNGAGKSTMIKCLTGEVEPSEG 747
                  46777888877754...67999999999999999************************999 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.91
    TIGR01194 463 nystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry 532
                   y    +ls Gq+ ++ + +a  ++  v++lde +   d    r     l   +k     +++i+h+d++
  MMETSP1174-20130828|22329_1 915 HYR-MNALSGGQKVKVVIGAAMWNQPHVVILDEPTNYLD----RESLGALANAIKEYAGGVVIITHNDEF 979
                  454.7899*9*9999998888888888999**9877655....556677888888888889999998876 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012      0.83    1212    1244 ..     573     605 ..     569     655 .. 0.90
   2 !    6.1   0.1    0.0053      0.38      33      48 ..     723     738 ..     714     748 .. 0.87
   3 ?    4.9   0.0     0.013      0.92    1225    1274 ..     940     981 ..     922     993 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
    TIGR00606 1212 irlalaevfclnCgiialdePttnldrekiesl 1244
                   ++lala  + l+  i+ ldePt  ld  ++  +
  MMETSP1174-20130828|22329_1  573 MKLALARAMLLKADILLLDEPTNHLDVMNVKWV 605 
                   589***********************9999765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0053
    TIGR00606  33 lvGPnGaGkttiieal 48 
                   vGPnGaGk t+i +l
  MMETSP1174-20130828|22329_1 723 CVGPNGAGKSTMIKCL 738
                  59*************9 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.013
    TIGR00606 1225 giialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlve 1274
                    ++ ldePt  ldre + +la a+     +        +++ith++++  
  MMETSP1174-20130828|22329_1  940 HVVILDEPTNYLDRESLGALANAIK----EYAG----GVVIITHNDEFCR 981 
                   5789**********99998887754....4433....3667777776665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.22        15     775     813 ..     460     498 ..     428     507 .. 0.77
   2 !    6.3   0.0    0.0044      0.31     194     242 ..     551     599 ..     541     615 .. 0.92
   3 ?   -0.4   0.0      0.47        33     794     813 ..     723     742 ..     677     749 .. 0.62
   4 ?    4.2   0.0     0.019       1.3     210     254 ..     921     965 ..     912     974 .. 0.62

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.22
    TIGR00956 775 krvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                  ++ lL++ +  ++ G+   L+G    GkttL+  +a+ +
  MMETSP1174-20130828|22329_1 460 TKILLHNTKMKLRRGSKYGLLGGNDSGKTTLMRSIAQEQ 498
                  566777777777777777888888888888888887765 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0044
    TIGR00956 194 LshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                  Ls  + tk+ +d v  +sGG r ++++a +++ ka i+++D+ t  LD 
  MMETSP1174-20130828|22329_1 551 LSVHFSTKMLDDGVSTLSGGWRMKLALARAMLLKADILLLDEPTNHLDV 599
                  677789***************************************9995 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.47
    TIGR00956 794 LmGasGAGkttLlnvLaeRv 813
                   +G  GAGk t++ +L++ v
  MMETSP1174-20130828|22329_1 723 CVGPNGAGKSTMIKCLTGEV 742
                  45667777777777776544 PP

  == domain 4    score: 4.2 bits;  conditional E-value: 0.019
    TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkt 254
                  +sGG++ +v i+ ++ +++++ ++D+ t  LD      +++a+k+
  MMETSP1174-20130828|22329_1 921 LSGGQKVKVVIGAAMWNQPHVVILDEPTNYLDRESLGALANAIKE 965
                  466666666666666666666666666666665554444455444 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0088      0.62       5      27 ..     476     498 ..     473     507 .. 0.88
   2 ?    3.9   0.0      0.13       9.2       5      25 ..     720     740 ..     718     749 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0088
    TIGR00231   5 kivivGhvdvGKstLlnsllknk 27 
                  k +++G  d+GK+tL+ s+++++
  MMETSP1174-20130828|22329_1 476 KYGLLGGNDSGKTTLMRSIAQEQ 498
                  56899**************9988 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.13
    TIGR00231   5 kivivGhvdvGKstLlnsllk 25 
                  +++ vG  ++GKst+++ l++
  MMETSP1174-20130828|22329_1 720 RVGCVGPNGAGKSTMIKCLTG 740
                  6999***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 2.03u 0.23s 00:00:02.25 Elapsed: 00:00:01.09
# Mc/sec: 1306.57
//
Query:       MMETSP1174-20130828|22338_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|22337_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 192.91
//
Query:       MMETSP1174-20130828|22340_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1722.46
//
Query:       MMETSP1174-20130828|22341_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0005   18.0   0.0     0.0018   16.2   0.0    1.9  2  TIGR00040 yfcE: phosphodiesterase, MJ0936 family


Domain annotation for each model (and alignments):
>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.5e-07    0.0018       2      71 ..      64     144 ..      63     173 .. 0.74
   2 ?   -1.9   0.0      0.16   6.5e+02     109     123 ..     226     240 ..     215     243 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.5e-07
    TIGR00040   2 kilvlsDtHiperatelpvellkklsevdlvvhaGdlt......................sakvlkefedlaekviavrGnnDgekeelpee 71 
                  +i+ +sDtH+ e       + l++l + d+++h+Gd++                      +a+ +++ ++++    + rGn+D+ +  +p +
  MMETSP1174-20130828|22341_1  64 RIVCISDTHGFE-------DTLDDLPDGDILLHCGDFMptrrertkdkpykmkqdaghrlDAFLAQQTHRYKI---VLRGNHDR-RVTFPLS 144
                  7999******99.......5789999***************************99966655555555555554...77*****5.4444433 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.16
    TIGR00040 109 vlifGHtHepvaeel 123
                  v  fGH He++  +l
  MMETSP1174-20130828|22341_1 226 VWFFGHIHEAHGARL 240
                  6679****9886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1177.48
//
Query:       MMETSP1174-20130828|22346_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 385.27
//
Query:       MMETSP1174-20130828|22342_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   21.6   0.0     0.0091   12.8   0.0    2.4  2  TIGR02037 degP_htrA_DO: peptidase Do
     0.0091   12.7   0.0        1.4    5.5   0.0    2.0  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
  ------ inclusion threshold ------
      0.012   12.5   0.0       0.35    7.6   0.0    2.1  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.7e-06    0.0091     258     292 ..     161     193 ..     125     224 .. 0.75
   2 !    6.6   0.0    0.0005      0.69     269     292 ..     260     283 ..     245     314 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.7e-06
    TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvngkkik 292
                   +G+ v +v  g+ A++ G++aGD+i+++ng +i 
  MMETSP1174-20130828|22342_1 161 YEGVQVESV--GGNARRRGMQAGDIITRINGVEIP 193
                  367777776..788999999999999999999984 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0005
    TIGR02037 269 gspAekaGlkaGDvilkvngkkik 292
                  +++A+  GlkaGD++l++n +++ 
  MMETSP1174-20130828|22342_1 260 SGAAKGQGLKAGDMVLAINKEPVP 283
                  356666799999999999988775 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0     0.001       1.4     213     235 ..     171     193 ..     135     220 .. 0.77
   2 !    4.6   0.0    0.0019       2.6     201     233 ..     251     281 ..     237     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.001
    TIGR00054 213 spaekaGlkeGDkilkidgeklk 235
                  ++a + G+++GD i +i+g+++ 
  MMETSP1174-20130828|22342_1 171 GNARRRGMQAGDIITRINGVEIP 193
                  567778*************9875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0019
    TIGR00054 201 kielvlsdvvdnspaekaGlkeGDkilkidgek 233
                  k  lv+s v   ++a+  Glk+GD +l i+ e+
  MMETSP1174-20130828|22342_1 251 KDTLVISAV--SGAAKGQGLKAGDMVLAINKEP 281
                  445677777..7788888***********9876 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00026      0.35      95     159 ..     140     209 ..      54     235 .. 0.64
   2 ?    3.0   0.0    0.0065       8.9     126     149 ..     263     286 ..     252     327 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00026
    TIGR02860  95 GqsiGvklntkGvl..vvG..fsdietekGkiesPaeeagiqvGDlilkvngekik...eeedvaklineag 159
                   +++ +kl t+  l  vv   ++ ++ e  ++   a++ g+q GD+i+++ng +i    ++ + a l+++ +
  MMETSP1174-20130828|22342_1 140 ANTVEIKLPTNSSLglVVDndYEGVQVE--SVGGNARRRGMQAGDIITRINGVEIPpgfRAPHFAALVQQLR 209
                  5566666666654311332112222222..2333568889*************9972223445555566555 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0065
    TIGR02860 126 aeeagiqvGDlilkvngekikeee 149
                  a+  g++ GD++l++n+e++ +  
  MMETSP1174-20130828|22342_1 263 AKGQGLKAGDMVLAINKEPVPHGF 286
                  56779*************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1535.47
//
Query:       MMETSP1174-20130828|22347_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 909.26
//
Query:       MMETSP1174-20130828|22349_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|22348_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1195.04
//
Query:       MMETSP1174-20130828|22350_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1579.99
//
Query:       MMETSP1174-20130828|22352_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   16.1  43.3    0.00051   15.7  30.0    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0078   13.9   1.0       0.15    9.6   0.0    2.6  3  TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
  ------ inclusion threshold ------
      0.014   10.9  38.8      0.022   10.2  26.9    1.3  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.13    9.3  31.2      0.018   12.1   9.7    2.3  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  30.0     5e-07   0.00051     210     963 ..      12     266 ..       1     282 [. 0.44

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5e-07
    TIGR02168 210 ekAekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeelee 963
                  ++A+k ++ +e+l++l ++l  ++    ++ l++ ee+ ++++e+ e+ +++++ ++ +le  ++++ e  +e e+l+++l +l ++ +  eq+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    +++l+ +  el+   ++++++    e+ + +++a e ++ +l ++ +el++ ++ +++++++++ +l++++e++++l+ + +++ +a ++l++e ++l+++ ++ e k+ +l ++ +++++++ +l++++ +le   ++lq++l+++  +  + ae+l +
  MMETSP1174-20130828|22352_1  12 KEAQKSRQTREKLEALCRELQRQNKSIIENTLKASEEDRRRTKEMSEKFKETIDGVTVQLEAQDAQRVEQFKESEDLRRKLLSLLEKFDLREQQF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETQLKTKGLELKLATAKLEKQIDMSEREKIKADAHELQISTLVATENELRKLVALYAEKFDTFQGSLTTSNEKFQNLKMNLSQMGAAKDKLEREGSKLKRKNESNEVKIFQLVDQQQNAQKENMTLRNQKGKLEGLCRTLQQNLQQQRGVAEKLAEKLAA 266
                  33444444444444444444444444444444444444444444444444444444444444444444444444444444444444444333333...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3333333333333333333333333333333444444455555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555554444444 PP

>> TIGR03560  F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.026        27     188     224 ..       4      40 ..       1      43 [. 0.86
   2 ?   -3.3   0.0       1.3   1.4e+03     180     208 ..      68      95 ..      65     107 .. 0.67
   3 !    9.6   0.0   0.00015      0.15     181     224 ..     156     199 ..     142     202 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.026
    TIGR03560 188 adelNlvfadleelaeklevlreaceevgrdpeeirk 224
                  ++e+ l+++++++ ++  e+l++ c+e  r+ ++i +
  MMETSP1174-20130828|22352_1   4 SEEVSLLTKEAQKSRQTREKLEALCRELQRQNKSIIE 40 
                  5678888999999******************999875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
    TIGR03560 180 TlrlaaryadelNlvfadleelaeklevl 208
                  T++l a+ a+ +  + + +e+l++kl  l
  MMETSP1174-20130828|22352_1  68 TVQLEAQDAQRVEQFKE-SEDLRRKLLSL 95 
                  77777777777775555.57777766555 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00015
    TIGR03560 181 lrlaaryadelNlvfadleelaeklevlreaceevgrdpeeirk 224
                   +l+a ya+++ ++ ++l++ +ek++ l+ +++++g  ++++++
  MMETSP1174-20130828|22352_1 156 RKLVALYAEKFDTFQGSLTTSNEKFQNLKMNLSQMGAAKDKLER 199
                  579**********************************9999986 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  26.9   2.2e-05     0.022     203     502 ..      13     265 ..       1     285 [. 0.37

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.2e-05
    TIGR02169 203 rLekerekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502
                    +k r++ e+ ++L +e++  + +++ + l+a e++++++++  ++ +e ++++++++e++                                               a+  e+ +++e+ ++k+ + ++k + + +++e++++++  e +  +++l+++ +  e  + ++++ + +  +l++  +el++ +  + e+ +  ++ l    e+ ++l+++l+++ a+  ++e +  +l+ + e+ + +i +   + ++++++  ++++++ kl+   + l+++l++ +r +ae+ a++ a
  MMETSP1174-20130828|22352_1  13 EAQKSRQTREKLEALCRELQRQNKSIIENTLKASEEDRRRTKEMSEKFKETIDGVTVQLEAQ----------------------------------------------DAQRVEQFKESEDLRRKLLSLLEKFDLREQQFETQLKTKGLELKLATAKLEKQIDMSEREKIKADAHELQISTLVATENELRKLVALYAEKFDTFQGSLTTSNEKFQNLKMNLSQMGAAKDKLEREGSKLKRKNESNEVKIFQLVDQQQNAQKENMTLRNQKGKLEGLCRTLQQNLQQ-QRGVAEKLAEKLA 265
                  22233333333333333333333333333333333333333333333333333333333322..............................................2223333344444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333333333333333333333333333333333322.2222222222222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   7.7     0.047        49      71     154 ..      24     111 ..       3     144 .. 0.58
   2 ?   12.1   9.7   1.8e-05     0.018      53     246 ..     165     349 ..     129     357 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.047
    TIGR03752  71 lrkelaklekeNeklkke....nerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlp 154
                  l+  +++l+++N+++ ++    +e+ ++r+++++e+ ++++++++ +l+++  q  e+ +++e+l ++l + le+   ++++ e++l 
  MMETSP1174-20130828|22352_1  24 LEALCRELQRQNKSIIENtlkaSEEDRRRTKEMSEKFKETIDGVTVQLEAQDAQRVEQFKESEDLRRKLLSLLEKFDLREQQFETQLK 111
                  2233345556666554331111455566667888888888888888888888888888887887777777777744444444443333 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.8e-05
    TIGR03752  53 egdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdregkksapskesfptsfdnalkrkkkaleavakaeeaekakskekkakpvyTipenstLmg 246
                  + dt++  l t   + ++l+ +l+++ +  +kl++e ++lk+++es + +i q +++ +++++ke+ +l++++ kle+l ++lq++l+++   +e+ +e l   lG ++++++++        + p+    + ++  +s + ++++p + ++++++++++++ +a ++   + +s++ +++pv    +nst  g
  MMETSP1174-20130828|22352_1 165 KFDTFQGSLTTSNEKFQNLKMNLSQMGAAKDKLEREGSKLKRKNESNEVKIFQLVDQ-QQNAQKENMTLRNQKGKLEGLCRTLQQNLQQQRGVAEKLAEKLAAKLGERGQKEDAA------LLTGPTGSSSSSSS--SSCAGTTAVPPDAHEEVSENSTSVQGEAAEDALCALSSENAETTPVNSSSSNSTSGG 349
                  45999999********************************************99998.88999999999******************9877777777888888888776666555......45555555555444..234455555555556666666666666666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       489  (0.11921); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.54
# Mc/sec: 941.03
//
Query:       MMETSP1174-20130828|22356_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    7.6   6.5          1    7.3   0.4    2.9  3  TIGR02949 anti_SigH_actin: anti-sigma factor, TIGR02949 family
        1.4    6.9  12.5        1.9    6.5   0.7    3.0  3  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
          2    6.5   7.4       0.71    7.9   1.0    2.6  3  TIGR03988 antisig_RsrA: mycothiol system anti-sigma-R factor


Domain annotation for each model (and alignments):
>> TIGR02949  anti_SigH_actin: anti-sigma factor, TIGR02949 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.13   1.7e+02      36      48 ..      42      54 ..      38      71 .. 0.73
   2 ?    1.8   0.0      0.04        54      17      42 ..      99     123 ..      84     126 .. 0.72
   3 ?    7.3   0.4   0.00076         1      26      53 ..     130     157 ..     125     163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.13
    TIGR02949 36 leaCpeCleeydl 48
                 l+ Cp C+e + +
  MMETSP1174-20130828|22356_1 42 LACCPACSEPLAA 54
                 788****987655 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.04
    TIGR02949  17 yefldgelteddaerlrrHleaCpeC 42 
                  +ef+d+  +++    lr  + +Cp+C
  MMETSP1174-20130828|22356_1  99 QEFADEGDQNHATRSLR-DVRQCPGC 123
                  57777666666555565.599****9 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00076
    TIGR02949  26 eddaerlrrHleaCpeCleeydlEqavr 53 
                  ++++  l++H  +Cp C  +    +a+ 
  MMETSP1174-20130828|22356_1 130 NEHCSDLKAHHGQCPRCYARPLTATAID 157
                  67899************97655555555 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7    0.0014       1.9      21      34 ..      37      50 ..      32      60 .. 0.85
   2 ?    4.7   0.1    0.0052       7.1      22      34 ..     115     125 ..     105     129 .. 0.72
   3 ?    2.7   3.5     0.021        28       7      35 ..     119     149 ..     118     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0014
    TIGR02605 21 msddplasCPeCgs 34
                 +s++ la+CP+C++
  MMETSP1174-20130828|22356_1 37 LSEEGLACCPACSE 50
                 578999******98 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0052
    TIGR02605  22 sddplasCPeCgs 34 
                     +  +CP Cg+
  MMETSP1174-20130828|22356_1 115 R--DVRQCPGCGA 125
                  4..4889****98 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.021
    TIGR02605   7 rCtaCghefevlqkmsd..dplasCPeCgse 35 
                  +C+ Cg       ++sd  +   +CP+C + 
  MMETSP1174-20130828|22356_1 119 QCPGCGAGPLLNEHCSDlkAHHGQCPRCYAR 149
                  699999999999999999888899****874 PP

>> TIGR03988  antisig_RsrA: mycothiol system anti-sigma-R factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.063        86      29      52 ..      42      65 ..      38      72 .. 0.77
   2 ?   -2.1   0.0      0.69   9.4e+02      24      35 ..     112     123 ..      99     126 .. 0.58
   3 ?    7.9   1.0   0.00052      0.71      19      37 ..     130     148 ..     125     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.063
    TIGR03988 29 ldeCseCleeygleeevkslvkrk 52
                 l+ C++C e + +    k+l  r 
  MMETSP1174-20130828|22356_1 42 LACCPACSEPLAAPPVTKNLATRD 65
                 778*****9998888777776665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.69
    TIGR03988  24 rlraHldeCseC 35 
                  r  + + +C+ C
  MMETSP1174-20130828|22356_1 112 RSLRDVRQCPGC 123
                  333446778877 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00052
    TIGR03988  19 eedrarlraHldeCseCle 37 
                  +e+++ l+aH  +C+ C  
  MMETSP1174-20130828|22356_1 130 NEHCSDLKAHHGQCPRCYA 148
                  789**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 569.64
//
Query:       MMETSP1174-20130828|22359_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1174-20130828|22357_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 218.29
//
Query:       MMETSP1174-20130828|22362_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 391.57
//
Query:       MMETSP1174-20130828|22360_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-37  126.3   0.7    3.9e-37  126.1   0.5    1.1  1  TIGR00487 IF-2: translation initiation factor IF-2
    8.7e-07   25.5   0.1      9e-07   25.5   0.1    1.1  1  TIGR00491 aIF-2: translation initiation factor aIF-2


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.5   1.9e-40   3.9e-37     377     583 ..      62     275 ..      23     278 .] 0.88

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 1.9e-40
    TIGR00487 377 qikegelkelniilkaDvqGsleaiknslekleveevkvkvihsgvGeitetDislasas.naiiigfnvrl.dakakkvaeaenvdlrkysviyklideikavlkGlldPeleeeviGkaevrevfkvpkiG....aiaGcvvkeGvikrdnklrvlrdgvvife..GeidsLkrfkddvkeveegyeCGiviknyndikvGDiieafevkevk 583
                   ++ +e + ++i++k D+ G+  a+++ + ++ + + k++++h g+G +t  D++ a a+ +a i++fnv +  +++ ++ ++ n+++rk+++iy+++d+i++v+   l  ++ e+v+Gkaev+++f++   G    ++aGcv +eG +  ++  +v+r+g+ +f+  G   ++++ + +v ev+ g eCGi++  y+ ++vGDi+e  ++ evk
  MMETSP1174-20130828|22360_1  62 DATVDEAAVVPIVVKVDSYGTKAAVEELVSEIPQGKCKLSLVHMGIGPVTLGDLDAAIAAgGAPIMAFNVSVlGGDVLTALKRSNIEVRKHRIIYSMVDDIRSVMVDALPRVVVEKVVGKAEVKQLFSIDLKGtgkvTVAGCVCTEGNLFSGKGFKVVRNGEYLFStdGAGTTIRQHQREVAEVNYGSECGIGL-GYEGVQVGDILECVDKSEVK 275
                  4555677789********************************************99977659********8626789999***********************************************997666334469**************************6448899*********************9.7************9999998 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   4.4e-10     9e-07     352     530 ..      71     253 ..       5     272 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.4e-10
    TIGR00491 352 eGilvkadtlGs...lealvnelrkagvkikk..aevGdvskkdvvevasakqenklygaivafnvkilp.eaekeiekydikvfldniiyklvedfeewikkeeerkkrkeleklikPakirilpdlifrqk.dPaivGvevlaGvlrvgapl.ikedGekv....Gevreikdrgenvkeakagkavsi 530
                  + i+vk d+ G+   +e lv+e+ + + k+      +G+v+  d+ ++a+a+  ++    i+afnv +l  ++ + +++++i v ++ iiy +v+d+   + +   +  r  +ek++  a ++ l  + ++   + +++G     G l  g ++ +  +Ge +    G+  +i++++++v+e+++g +  i
  MMETSP1174-20130828|22360_1  71 VPIVVKVDSYGTkaaVEELVSEIPQGKCKLSLvhMGIGPVTLGDL-DAAIAAGGAP----IMAFNVSVLGgDVLTALKRSNIEVRKHRIIYSMVDDIRSVMVD---ALPRVVVEKVVGKAEVKQLFSIDLKGTgKVTVAGCVCTEGNLFSGKGFkVVRNGEYLfstdGAGTTIRQHQREVAEVNYGSECGI 253
                  3689****999633377889999988887765115689****996.8888887766....77*******7358999********************9987765...4566788888888888887776665431555666666666665544322223343332333556667777777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 965.60
//
Query:       MMETSP1174-20130828|22367_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.53
# Mc/sec: 226.62
//
Query:       MMETSP1174-20130828|22371_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|22373_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 690.11
//
Query:       MMETSP1174-20130828|22374_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-06   21.9  17.5      8e-06   21.7  12.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    9.8e-06   21.3  15.5    1.1e-05   21.1  10.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.48    7.2  12.9       0.81    6.4   8.9    1.5  1  TIGR00414 serS: serine--tRNA ligase
       0.96    5.7  16.2        1.3    5.3  11.2    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        1.8    5.2  16.3        3.6    4.3   9.3    1.7  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        2.1    6.3  14.1        2.8    5.9   2.1    2.3  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        2.8    4.3  13.7        4.7    3.6   8.8    1.6  1  TIGR02231 TIGR02231: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  12.2   1.4e-08     8e-06     262     424 ..      35     193 ..      25     199 .] 0.53

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.4e-08
    TIGR02168 262 lkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeie 424
                  ++el  e++ l++  se+e++le++ ++l e+ +++++++ e + lk++ ++le++ e++ + ++ ++ + ++l++el+  ++  ee+ke+ ++++  +ee     ++l++++  le++l++  s +++le +++ l+ e e l +e+ +l++++++  + ++
  MMETSP1174-20130828|22374_1  35 VSELRGEVSGLKKLCSERERQLESMCEQLGEAHTNQANMDVESQLLKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKAMGEEVKEKDDRMKGLVEE----GQKLSAKIGGLEKKLRQRTSTIKSLEADKTVLSTEKEALVSEVAALQKKVKESLNATS 193
                  44555555556666666666666666666666666666666666666666666666666655555555555555555555555444444444444444444....4555555555555555555555555555555555555555555555555544443333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  10.7     2e-08   1.1e-05     794     945 ..      35     189 ..      27     199 .] 0.62

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2e-08
    TIGR02169 794 ieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleele...aavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeee 945
                  + e++ e++ l++  s+ e +le++ ++l + +++++ ++ e+q l++++++le  ++++++ +++   + + l++el+ ++    +v+e +++ k+L +e ++l+a++  lekk ++  ++i++ +     l +++eal +e+++l+++vke  
  MMETSP1174-20130828|22374_1  35 VSELRGEVSGLKKLCSERERQLESMCEQLGEAHTNQANMDVESQLLKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKamgEEVKEKDDRMKGLVEEGQKLSAKIGGLEKKLRQRTSTIKSLEADKTVLSTEKEALVSEVAALQKKVKESL 189
                  45666666677777777777777777777777777777777777777777777766666666666666666666666543331114566666666777777777777777777777777777777777777777777777777777776654433 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.9    0.0014      0.81      23     132 ..      71     183 ..      32     197 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0014
    TIGR00414  23 lsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelk...eeleeleaelkeleeeleekllkipnlvaesvpvgkdeednlevkkegek 132
                  + ++++ + l+++ +kl + ++k+++lqk    + ++++k+ +  k+  ee+k++ +++k   ee ++l+a++  le++l++  ++i  l a+++++++++e+ + + + ++k
  MMETSP1174-20130828|22374_1  71 ANMDVESQLLKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKAMGEEVKEKDDRMKglvEEGQKLSAKIGGLEKKLRQRTSTIKSLEADKTVLSTEKEALVSEVAALQK 183
                  22444445555666667777777888887777777777776665555566666554444411155566778888888888888888888888888888877776644333333 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.2    0.0021       1.3      49     179 ..      55     192 ..      33     198 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0021
    TIGR03319  49 kkealleakeevkklreelekel...kerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleeke...keleekeeeleellkeqkeeL.ekisgltqeeAkellleeveeelkeeaaklikeieeeakee 179
                  + e + e+  e+++ +++++ e    k++ ++l++ ++++++ +++ d + ++l+k+ +  +   +e++ek    k l e+ ++l+ ++   +++L ++ s + + eA +++l++ +e l +e+a+l k+++e+++++
  MMETSP1174-20130828|22374_1  55 QLESMCEQLGEAHTNQANMDVESqllKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKAMGEEVKEKDdrmKGLVEEGQKLSAKIGGLEKKLrQRTSTIKSLEADKTVLSTEKEALVSEVAALQKKVKESLNAT 192
                  445555666666666666655541114455566666667777777777777777777666666666666555000445566667777777777887356888999999999999999999999999999999887765 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.3    0.0061       3.6     133     252 ..      44     164 ..      20     183 .. 0.64
   2 ?    3.2   1.0     0.013       7.4     131     172 ..     157     198 ..     150     199 .] 0.85

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0061
    TIGR01843 133 lfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelq.gelaeleaeleklkaeldeleeklqeleqkfreevse..elreaqa 252
                   +++  s+ + qles+ +q+ +  +++++++ + q l+ q+  +++  e +r+L+++    r ++L++e  +a++  +e++e+  +++ l +e ++l +k+ +le+k+r+++s+  +l ea +
  MMETSP1174-20130828|22374_1  44 GLKKLCSERERQLESMCEQLGEAHTNQANMDVESQLLKAQVAKLERDHEKVRNLQKS-TDDRCQTLQKELHLAKAMgEEVKEKDDRMKGLVEEGQKLSAKIGGLEKKLRQRTSTikSL-EADK 164
                  555555666677777777777777777777777777778888888888888877644.556667777666666554146777777777777777777777777777777776642123.3332 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.013
    TIGR01843 131 eslfesrksalraqlesleaqikqleaeleglqaqlqalrqq 172
                   + +e+ k++l+ ++e+l ++++ l+++++++ +++ a +q+
  MMETSP1174-20130828|22374_1 157 IKSLEADKTVLSTEKEALVSEVAALQKKVKESLNATSASSQS 198
                  567899999999999999999999999999999999888876 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   3.9     0.013       7.5      91     154 ..      55     118 ..      44     127 .. 0.80
   2 ?    5.9   2.1    0.0048       2.8      82     128 ..     139     186 ..     111     197 .. 0.52

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
    TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrarkl 154
                  +l+++ e+  + ++++ ++  e + l+ ++++Le++ ek+++ ++ +++  +tl k ++ a+ +
  MMETSP1174-20130828|22374_1  55 QLESMCEQLGEAHTNQANMDVESQLLKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKAM 118
                  5667777888888888899999999999999999999999999999999888888877766665 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0048
    TIGR02894  82 ledviefL.qnlketleeaeklrkekeklkeeleslqkrneeLekele 128
                  l   i  L ++l++ +++ + l+ +k+ l +e+e+l  +++ L+k+++
  MMETSP1174-20130828|22374_1 139 LSAKIGGLeKKLRQRTSTIKSLEADKTVLSTEKEALVSEVAALQKKVK 186
                  333333331234444455555555666666666666666655555544 PP

>> TIGR02231  TIGR02231: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.8     0.008       4.7      70     191 ..      74     195 ..      61     199 .] 0.72

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.008
    TIGR02231  70 seriaelrkkireleaeledledradalkklkkfledirekltepikdlkreeadlkelkklldfaeseieklleedreveakirelekklselenelralltekeqrskkvlvtleateda 191
                  +++ + l++++ +le+  e++ + +++ + + ++l++  +  +++ +++k++   +k l +  +   ++i  l++++r+ ++ i+ le  ++ l +e +al++e  + +kkv  +l+at + 
  MMETSP1174-20130828|22374_1  74 DVESQLLKAQVAKLERDHEKVRNLQKSTDDRCQTLQKELHLAKAMGEEVKEKDDRMKGLVEEGQKLSAKIGGLEKKLRQRTSTIKSLEADKTVLSTEKEALVSEVAALQKKVKESLNATSAS 195
                  34444556666666666666655555555555666555555555555578888899999999999999999999999999999999999999999999999999999999999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.51
# Mc/sec: 515.02
//
Query:       MMETSP1174-20130828|22379_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|22376_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 756.74
//
Query:       MMETSP1174-20130828|22380_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   28.6   1.1    1.2e-07   28.5   0.8    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
  ------ inclusion threshold ------
      0.022   11.5   0.4       0.04   10.6   0.2    1.6  2  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.8   5.8e-11   1.2e-07     309     386 ..      13      92 ..       2      98 .] 0.79

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.8e-11
    TIGR00879 309 iirrlllgvvlqafqQltGiNaimyYsptifenlGvstdta..llvsiivgavnvaaTfvaiflvdrfGRrtllliGaag 386
                  +++ +   ++l+ +qQ+tG  a+ yY  ti+ n+  + + +  ++  + +g  +++  ++a+ ++d +GR+tlll+G+ +
  MMETSP1174-20130828|22380_1  13 LAGLVWVALLLVLMQQTTGAPAVSYYIVTILDNTYETWSSSnlMYHLMGIGGAKILGDVLAVSFIDHVGRKTLLLVGFGM 92 
                  566667778999*********************9543343334888899999*************************643 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.036        73     203     231 ..      21      49 ..       5      58 .. 0.72
   2 ?   10.6   0.2     2e-05      0.04     348     376 ..      66      94 ..      19      98 .] 0.78

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.036
    TIGR00887 203 wrillglgavpaalalyfrltipetaryt 231
                  + ++l+ ++ +a +  y+ +ti +++  t
  MMETSP1174-20130828|22380_1  21 LLLVLMQQTTGAPAVSYYIVTILDNTYET 49 
                  45678888888888889988888877655 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2e-05
    TIGR00887 348 tvPGYWvtvflvdklGRkaiqlmGFvilt 376
                  ++ G  ++v ++d++GRk++ l GF + +
  MMETSP1174-20130828|22380_1  66 KILGDVLAVSFIDHVGRKTLLLVGFGMAG 94 
                  46788899*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|22382_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 749.51
//
Query:       MMETSP1174-20130828|22381_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|22385_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         5  (0.00121892); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|22375_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1174-20130828|22387_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1345.44
//
Query:       MMETSP1174-20130828|22388_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1367.03
//
Query:       MMETSP1174-20130828|22392_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|22390_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038    9.8   0.8       0.11    8.2   0.6    1.7  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6   2.8e-05      0.11      80     158 ..     515     613 ..     459     650 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 2.8e-05
    TIGR00870  80 egevGdalLhai.skelvdaveailllllkaarksltls....................elandestseftkgitalilAihkqnyeivklLlekgasve 158
                  + ++Gd  +h+i +k+++ +++ +++  ++ ++k + +                           +  +   g tal+ A+     e+vklLle ga+ +
  MMETSP1174-20130828|22390_1 515 KNAMGDQPIHIIaRKDMHAILDRLITAGADVNGKGQ-YGmtalhiaaaretsslsmhliTAGAHLNAVDSLGGGTALHHAVNAGAAETVKLLLEAGADQK 613
                  444444444443123334444444444444333322.1123444444444444444332222222334556799**********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2260.74
//
Query:       MMETSP1174-20130828|22394_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 982.00
//
Query:       MMETSP1174-20130828|22397_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1050.84
//
Query:       MMETSP1174-20130828|22405_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1206.76
//
Query:       MMETSP1174-20130828|22408_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 420.72
//
Query:       MMETSP1174-20130828|22406_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   68.3   0.0    7.9e-09   32.7   0.0    3.1  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.9e-12   7.9e-09       5     101 ..      82     186 ..      78     216 .. 0.83
   2 !   26.9   0.0   1.1e-10   4.5e-07     251     364 ..     312     432 ..     286     447 .. 0.81
   3 !    5.0   0.0    0.0005         2     402     448 ..     509     561 ..     502     585 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.9e-12
    TIGR03417   5 ililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrig.vydnaaefas........diptyahylraaGyktalsGkm 101
                  ++++mvd +  + +   +      + nl++l+++++ ++  yt+   c+Par+++l+G+ P ++g +yd    f++        d+     yl ++Gy+t++ Gk 
  MMETSP1174-20130828|22406_1  82 LVFIMVDDMGHNDIGYATTDLKYATMNLDHLSEKGIILNRYYTQQ-SCTPARVAFLTGRYPINVGmAYDARGSFTAvspygvplDVKLLPEYLNNHGYRTTMVGKW 186
                  789******99998875555567789***********99888875.6****************9857**9999987444444446677899*************96 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.1e-10
    TIGR03417 251 arrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.....kmsffegsarvPllvaap...erleagrveaavstvdllPtlvelagveleevlpaldGeslvpll 364
                  ar  +  ++  +d+ +  ++++le++++ +++ v ++sd G    +    y     k   feg+  vP ++++p   +r++ ++ ++    vd  Ptl ++a  ++e  ++ ldG s +   
  MMETSP1174-20130828|22406_1 312 ARYHFAKTLIALDKAVKRIIDTLESANMLENSFVFVASDNGGCPSDGSNNYplrggKFDLFEGGVHVPSFIYSPllpTRMQGTKYNNLFHAVDWAPTLLQIADPDMEIPTN-LDGVSHIDYF 432
                  455455556789*****************************9988777766555568899***********975333799999999999**************99987766.9999877655 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0005
    TIGR03417 402 dPeqlydleadPkelenlaeepehaetlealr......aeaaarwdlealdae 448
                    + l+dl++dP e +n+  e ++ +++ +l+      + ++++w  ++ d +
  MMETSP1174-20130828|22406_1 509 KSDYLFDLKNDPLEYKNVIGERHEIAAMMKLKlrayydNATKTQWRAPEQDVA 561
                  5689*************987765544443333000000223344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 1936.86
//
Query:       MMETSP1174-20130828|22411_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1174-20130828|22413_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 863.28
//
Query:       MMETSP1174-20130828|22414_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|22415_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 455.02
//
Query:       MMETSP1174-20130828|22420_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   23.0   0.4    1.4e-05   23.0   0.3    1.1  1  TIGR00729 TIGR00729: ribonuclease HII


Domain annotation for each model (and alignments):
>> TIGR00729  TIGR00729: ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.3   3.5e-09   1.4e-05     126     158 ..      36      68 ..       2      69 .] 0.74

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.5e-09
    TIGR00729 126 eikviaehkADskYpvVsaASiiAKveRdeeie 158
                  +++ +   k Dsk   ++aASi+AKv+Rd++++
  MMETSP1174-20130828|22420_1  36 QVEALTVVKGDSKIFSIAAASILAKVTRDRIMQ 68 
                  3555666799*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|22418_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1220.01
//
Query:       MMETSP1174-20130828|22419_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 489.64
//
Query:       MMETSP1174-20130828|22425_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 243.67
//
Query:       MMETSP1174-20130828|22427_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 568.57
//
Query:       MMETSP1174-20130828|22422_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   14.0   0.0     0.0079   13.8   0.0    1.1  1  TIGR03137 AhpC: peroxiredoxin


Domain annotation for each model (and alignments):
>> TIGR03137  AhpC: peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.9e-06    0.0079      32     114 ..      50     133 ..      34     169 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.9e-06
    TIGR03137  32 kwsvlvfypadftfvcpt.eledladkyeelkelgv.evysvstdthfvhkawhdeseaigkikypllgdptkkltrnfdvliee 114
                  k+ +++  p++f +  p  ++ +     ++lk+ g+ ev+   ++   v  aw d+ +  ++ +  +l+dpt++lt+++++ + +
  MMETSP1174-20130828|22422_1  50 KF-IIMGLPGAFNLADPExQVPEYMGAEASLKAKGIdEVFVYCVNDGAVMCAWGDDLDIHSTPHMRMLADPTGALTKALGMAMTH 133
                  44.55667888888888525677777888999999867999999999999****************************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 767.94
//
Query:       MMETSP1174-20130828|22429_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|22430_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1174-20130828|22431_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   17.6   0.0     0.0004   16.9   0.0    1.3  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.9e-08    0.0004     112     165 ..     122     179 ..     105     182 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 9.9e-08
    TIGR03219 112 lkklp...egiakfgkkaksieeqaeevevsfedGtey.radlligadGiksalrdyv 165
                  l+ lp   ++ akf+k +  +   +  v  +f dGt+    d+++g dGi+sa+++yv
  MMETSP1174-20130828|22431_1 122 LDLLPpkvKARAKFSKTLIGLYGDEFGVMCQFMDGTTEgPFDMVVGCDGINSAVKEYV 179
                  444442114557888888888888889999*****976268***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|22433_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.6   4.0      0.066   10.8   0.2    2.1  2  TIGR02454 CbiQ_TIGR: cobalt ABC transporter, permease protein CbiQ


Domain annotation for each model (and alignments):
>> TIGR02454  CbiQ_TIGR: cobalt ABC transporter, permease protein CbiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   1.6e-05     0.066      28      59 ..      42      73 ..      25      79 .. 0.76
   2 ?    3.1   0.3    0.0038        16      55     100 ..      99     141 ..      93     147 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.6e-05
    TIGR02454 28 lllilalllvllakiplrvllkrlavpivFll 59
                  +++ +l  ++ + +p+r+ll+rla+p++++ 
  MMETSP1174-20130828|22433_1 42 SVIATFLGGAFTSSVPIRQLLRRLALPLLIAG 73
                 34455667899*****************9975 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0038
    TIGR02454  55 ivFllvvlllllfsigtepgepllslglaelsitkeglaaaltlll 100
                   ++++vv+  +l+ + t pg++l +++l   +  +  +a+a++l l
  MMETSP1174-20130828|22433_1  99 YALCAVVMPAVLLVVKTRPGTSLSTVWL---VFVAFQAARAALLNL 141
                  4566777777777777788888877553...333444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 534.73
//
Query:       MMETSP1174-20130828|22440_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.5   0.0      1e-05   22.5   0.0    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0029   14.6   0.0     0.0033   14.4   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
      0.016   12.6   0.0       0.11    9.8   0.0    1.5  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      0.027   12.4   0.1      0.064   11.2   0.1    1.5  1  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     1e-08     1e-05     218     268 ..      44      96 ..       3      97 .] 0.69

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1e-08
    TIGR01622 218 adlkLYvGnlhfnitEqeLrqiF.epFGeielvqlqk..DpetGrskGyGFiqF 268
                   + k+++ +l f +tE++Lr+ F    Gei++v++ +  Dp   r+kG  +i+F
  MMETSP1174-20130828|22440_1  44 DTNKVFIEGLPFTMTEKMLREFFcSRCGEILNVKVVMfpDPPK-RCKGLAYITF 96 
                  3467788888888888888888833478888887766334444.7888888887 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.2e-06    0.0033     288     333 ..      48      96 ..      38      97 .] 0.52

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.2e-06
    TIGR01628 288 lYvkNlddtvddekLrelF.eefGeitSakvml..dekekSkgFGFVcf 333
                  +++  l  t+++++Lre F +++Gei  +kv++  d+ ++ kg  +++f
  MMETSP1174-20130828|22440_1  48 VFIEGLPFTMTEKMLREFFcSRCGEILNVKVVMfpDPPKRCKGLAYITF 96 
                  4455555555555555555445555555555432334455555555544 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00011      0.11      11     302 ..      53      80 ..      48      97 .] 0.40

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00011
    TIGR01661  11 lPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiir 302
                  lP tmt++ +r +f                                                                                                                                                                                                                                                                         ++ G + +vk++ 
  MMETSP1174-20130828|22440_1  53 LPFTMTEKMLREFFC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRCGEILNVKVVM 80 
                  333333333333333........................................................................................................................................................................................................................................................................3445555555443 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.2e-05     0.064       5      30 ..      64      89 ..      63      90 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.2e-05
    TIGR02605  5 eYrCtaCghefevlqkmsddplasCP 30
                 e+ C++Cg+  +v + m  dp++ C 
  MMETSP1174-20130828|22440_1 64 EFFCSRCGEILNVKVVMFPDPPKRCK 89
                 899************9999******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 457.25
//
Query:       MMETSP1174-20130828|22441_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 664.83
//
Query:       MMETSP1174-20130828|22444_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 664.83
//
Query:       MMETSP1174-20130828|22448_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 570.19
//
Query:       MMETSP1174-20130828|22452_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    9.3   3.8       0.25    9.2   2.6    1.0  1  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit


Domain annotation for each model (and alignments):
>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.6   6.2e-05      0.25      78     126 ..       1      50 [.       1      51 [] 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 6.2e-05
    TIGR01216  78 adeavrakeideaeaeealeaaekklesaedkkdlaeakkk.lkkararL 126
                  +d+a +a e d  e++  lea +++l+++e++k+l+ ++++ lk+a+ +L
  MMETSP1174-20130828|22452_1   1 VDAARKAYEDDLGEVNARLEAMQQALNESENEKNLEGLEAQaLKEAQKKL 50 
                  5889999999999*****************99999999865267776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|22450_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1495.88
//
Query:       MMETSP1174-20130828|22454_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1174-20130828|22455_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 248.75
//
Query:       MMETSP1174-20130828|22458_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   50.6   0.0      2e-14   50.5   0.0    1.0  1  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   4.8e-18     2e-14     565     644 ..      23     103 ..      12     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 4.8e-18
    TIGR00592 565 sfpldlkaevkkkvpakveklakerallkkflakvkkiDpdvivghdlqqvelkvlanrinelkiPtwskiGRLrrs.ekl 644
                   +p dlka  k+ + + v+++ +erall++ l +++ +Dpdv v h+l  + ++vl+ r +e k+ +wsk+GRLrr+ ++l
  MMETSP1174-20130828|22458_1  23 RHPHDLKAVLKESKMSGVQTVPNERALLSVLLNRIHTEDPDVLVSHNLFGFDFDVLVTRSVEHKLHHWSKLGRLRRTtPRL 103
                  5799************************************************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 560.95
//
Query:       MMETSP1174-20130828|22459_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 566.45
//
Query:       MMETSP1174-20130828|22462_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|22461_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.67
# Mc/sec: 392.03
//
Query:       MMETSP1174-20130828|22456_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 1993.73
//
Query:       MMETSP1174-20130828|22463_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 994.32
//
Query:       MMETSP1174-20130828|22464_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1174-20130828|22465_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|22467_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1174-20130828|22466_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-32  109.1   0.0    4.7e-32  108.9   0.0    1.0  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   1.1e-35   4.7e-32     324     579 ..       4     266 ..       1     273 [. 0.82

  Alignments for each domain:
  == domain 1    score: 108.9 bits;  conditional E-value: 1.1e-35
    TIGR00578 324 lllGfkPlsllkkqhylrPslfvyPeeslvrGsttlfsalllkclekkvaalcryisrrnvaPklvalvpqeeel...dd..qkiqvvPpGfqlvflPfaddkrkldftek.vkatreqvdkmkeiveklrftyr.sdsfenPvlqqhfrnlealald..lleaeqakdltlPkveklkkrlGelvdefkelvyPpdyapegkvakrkqagegsaskkpkvelseeelr..eevkkGtlgkltvsvlkdickaeGlrsgskkqelld 579
                   +lG  P   l+  h +r   f++P+e++++Gstt f al+   ++ k + l r i   + +P+lval+pq+e l   dd  ++ +    Gf+ + lPfadd r++++ +     +   vd m ++v+ +        +  nPvlq+ +  l+a+al    +e e a +l+ P+      +l   vd + e   P+  ++ +k +    a  g+++kk+k+ +++++l   e  k  t+ k tv+vlk + k +    g+kk++l+ 
  MMETSP1174-20130828|22466_1   4 TVLGCLPEDWLQPYHAVRSPYFIHPDEGSMKGSTTAFVALVDALVDSKKILLSRLIRSSSSSPQLVALLPQKECLyddDDeeEDEKDKAVGFHAITLPFADDLREVKLDRVpDPPNDSVVDAMLAVVNSMTVGRDfIREVSNPVLQKQYAILQAIALGgsYDEEEGAIELAPPEE--WA-QLKGRVDTL-ESLLPEATTTAAKRKAGAGAASGGTAKKSKTVQDDSSLDwaEIGKSKTVEKQTVPVLKAFLKSHDYPVGGKKADLVA 266
                  67999999***************************************************************9854322221133455678****************9866545678899*********9987543156799****************722566667777776654..33.444567765.667899999999999999999*********99999966421555777899************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1048.37
//
Query:       MMETSP1174-20130828|22468_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.54
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|22469_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 479.96
//
Query:       MMETSP1174-20130828|22470_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1174-20130828|22473_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 636.65
//
Query:       MMETSP1174-20130828|22471_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 1020.17
//
Query:       MMETSP1174-20130828|22474_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1704.21
//
Query:       MMETSP1174-20130828|22480_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|22478_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 941.29
//
Query:       MMETSP1174-20130828|22477_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 674.21
//
Query:       MMETSP1174-20130828|22481_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1174-20130828|22487_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 518.18
//
Query:       MMETSP1174-20130828|22490_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1043.54
//
Query:       MMETSP1174-20130828|22475_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1174-20130828|22485_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 632.64
//
Query:       MMETSP1174-20130828|22492_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   14.0   0.3       0.48    6.9   0.0    1.9  1  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00012      0.48     136     212 ..      22     103 ..      16     109 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00012
    TIGR03300 136 evlsaplvanglvvvrtsdgrvtaldaetGeklWsyerev..paLtlR...gsaspviadgvvlvgfanGklvalnletGql 212
                  +++sa +v+++ +v  + d++v  +d e+G    ++e  +  +aL+l    gs++p+ +dg v++g+    l+  +l+tG++
  MMETSP1174-20130828|22492_1  22 QLISAMAVSDEFLVSGSYDKSVRSWDIEKGVCSCTVELGAmiQALALNahtGSQEPTSTDGRVFIGTTAALLQSADLRTGKI 103
                  56788999999999999999999999999999998886431267888533367899999******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1534.84
//
Query:       MMETSP1174-20130828|22493_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.5e-115  381.3   0.3   7.3e-115  381.1   0.2    1.0  1  TIGR01139 cysK: cysteine synthase A
   5.4e-113  375.1   0.2   6.1e-113  374.9   0.1    1.0  1  TIGR01136 cysKM: cysteine synthases
    6.9e-83  276.6   0.2    8.1e-83  276.4   0.1    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    6.3e-71  237.1   0.1    1.3e-70  236.0   0.1    1.5  1  TIGR01138 cysM: cysteine synthase B
    2.7e-52  175.6   0.0    3.5e-52  175.2   0.0    1.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    2.3e-13   47.4   0.2    2.5e-13   47.2   0.2    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    7.9e-12   42.7   0.2      1e-11   42.3   0.2    1.1  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    8.2e-08   29.4   2.8      1e-07   29.1   1.9    1.2  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.4e-07   28.5   0.1    2.8e-07   27.5   0.1    1.5  1  TIGR02079 THD1: threonine dehydratase
    4.5e-07   27.1   0.0    6.2e-07   26.7   0.0    1.1  1  TIGR00260 thrC: threonine synthase
     0.0022   14.7   0.0     0.0038   13.9   0.0    1.4  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
     0.0038   13.7   0.0     0.0065   12.9   0.0    1.3  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.1   0.2  2.1e-117  7.3e-115       5     298 .]       1     304 [.       1     304 [. 0.99

  Alignments for each domain:
  == domain 1    score: 381.1 bits;  conditional E-value: 2.1e-117
    TIGR01139   5 iGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsgg.......kpgphkiqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                  +GntPl+ Ln +++++k++++ klesl P+ssvkdr++ +mi +ae egl+++gk ++ve+tsGntGiala++a +rgy+ iltmpetms+err++l a+G e+vLt+ ++ + ga++ka+e+++e +++  +l+qf+npan +ihr+tt+pei++d+dg +d+fv+gvGtGGt+tGv++++k+ kp+++ vaveP+e  +l+ +       ++gphkiqG+gag +P+vLd +++de++ +++++a+e++ r+  eeG+ vG+s+Ga v aa++v  +++ ++k+ v+i+p++gerY++ ++f
  MMETSP1174-20130828|22493_1   1 VGNTPLIYLNkVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLITPGKsVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVPGALAKAQEILAELGDEGHMLQQFANPANAKIHRETTGPEIWRDTDGLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLTAEkggekigEQGPHKIQGMGAGIVPEVLDLSLVDEIVPIHSDTAMEMTSRMWLEEGLPVGVSAGAIVSAAVQVMSQPSmEGKLCVAIIPSFGERYFTHPMF 304
                  7*********99******************************************9899************************************************************************99**********************************************************************98778999999*******************************************************************99*****************99887 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.9   0.1  1.8e-115  6.1e-113       5     299 .]       1     304 [.       1     304 [. 0.98

  Alignments for each domain:
  == domain 1    score: 374.9 bits;  conditional E-value: 1.8e-115
    TIGR01136   5 iGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg.......kpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                  +GntPl+ ln +++++k++++ KlEs  P++SvKdR + smi +Ae++gl+++gk +++e+tSGNtGiaLA++a+++gy+ il+mpetms+ERr +l a+G e+vlt++e+   ga++ka+e+++e ++++ +l+qf+NpaN ++Hr+ttgpEi++dtdg +d+fv+gvGtgGt+tGv++++k+ kp+++ vaveP+e  +l+         ++gphkiqg+gag++P++ld +l+de++ ++++ a+e++ r+  eeg+ vG+S+Ga v aa++v  +++ e+k  v+i+p++gerY++ ++f
  MMETSP1174-20130828|22493_1   1 VGNTPLIYLNkVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLITPGKsVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVPGALAKAQEILAELGDEGHMLQQFANPANAKIHRETTGPEIWRDTDGLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLTAEkggekigEQGPHKIQGMGAGIVPEVLDLSLVDEIVPIHSDTAMEMTSRMWLEEGLPVGVSAGAIVSAAVQVMSQPSMEGKLCVAIIPSFGERYFTHPMF 304
                  7*****************************************************9789**********************************************************************************************************************************************9987778899999**************************************************************************************99887 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   0.1   2.4e-85   8.1e-83       9     308 ..       1     301 [.       1     319 [. 0.95

  Alignments for each domain:
  == domain 1    score: 276.4 bits;  conditional E-value: 2.4e-85
    TIGR01137   9 iGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpg.dtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGsilaepeelnk..tektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltk 308
                  +GntPl+ lnkv++g+k++++ k+e + +  svkdr++++mi++ae++G + pg + l+ePtsGntGi la++a  +Gy+ci+++Pe +s e++ +l alG+e+v tP ++a+  P +     + l +  ++ ++l q+an+ n + h +ttg+ei+++++g +d +v+gvGtGGt+tG+++++k  +++++ v ++P   +l  +e+  +   e+ ++k++G+G   +P+vld ++vdei+  + + +++m+ r+  eegl vg s+G+ v aa++v  +   e++++v+++p  +  y+t 
  MMETSP1174-20130828|22493_1   1 VGNTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLITPGkSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAV--PGALAKAQEILAELGDEGHMLQQFANPANAKIHRETTGPEIWRDTDGLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLTAEKGGEkiGEQGPHKIQGMGAGIVPEVLDLSLVDEIVPIHSDTAMEMTSRMWLEEGLPVGVSAGAIVSAAVQVMSQPSMEGKLCVAIIPSFGERYFTH 301
                  8*****************************************************8899**************************************************99875..88888888888888899*******************************************************************9999877765432268999*****************************************************************************99999986 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.0   0.1   3.9e-73   1.3e-70       6     290 .]       1     304 [.       1     304 [. 0.89

  Alignments for each domain:
  == domain 1    score: 236.0 bits;  conditional E-value: 3.9e-73
    TIGR01138   6 vGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGd.vlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkg..eeklldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsai...eG...........lrrieseylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek..avvvaiicdrGdrylstgvf 290
                  vGntpl+ l++++   + +++ kle+  p+ svkdr   smi +ae  G i +G+ vl+e tsGntGiala +a  +Gy+ +l mp+ +s er+ +l a G e++l+ ke  + Ga   a+e+  +   e+ +l+qf+np+n k h  +tG+eiw+ t+G +  fvs++Gt+Gt++Gvs+++k  +p+++ v ++p+e + +   +G           ++ + + + p++ d slvd++v ++ + a ++  ++  +eg+ vGvs+G+ v aa+++  + +    + vaii+  G+ry++  +f
  MMETSP1174-20130828|22493_1   1 VGNTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLITPGKsVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETAVPGALAKAQEILAELgdEGHMLQQFANPANAKIHRETTGPEIWRDTDGLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLtaeKGgekigeqgphkIQGMGAGIVPEVLDLSLVDEIVPIHSDTAMEMTSRMWLEEGLPVGVSAGAIVSAAVQVMSQPSMegKLCVAIIPSFGERYFTHPMF 304
                  8*****************************************************85789***************************************************************8877412566*****************************************************************97653122221111122233355566789*************************************************976533333899***********998766 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2   0.0     1e-54   3.5e-52       5     295 ..       1     299 [.       1     304 [. 0.90

  Alignments for each domain:
  == domain 1    score: 175.2 bits;  conditional E-value: 1e-54
    TIGR03945   5 igntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipd.avwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifggep........gkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYl 295
                  +gntpl+ l+k+++  k ++  KlE+l p  SvKdr  ++++++a++eg i+pg ++++E +SGn +iaLa++++++G++ i  +   +s + + +l alg ev++  ++ +    ++  la+ +e+lae  d    l Q+an+ana+ h ett+ ei ++ +  vd+++ gv+t+Gt++Gv++++++ +pe++ vav+ +  +++ +e+        g+ +i G+Ga++vpe+ld sl+de+v ++   ++ ++ ++  +eg+ +G S+G++v+a+ +++++   eg+ +vai+p  GerY 
  MMETSP1174-20130828|22493_1   1 VGNTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLITPGkSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKETA----VPGALAKAQEILAELGDeGHMLQQFANPANAKIHRETTGPEIWRDTDgLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLTAEKggekigeqGPHKIQGMGAGIVPEVLDLSLVDEIVPIHSDTAMEMTSRMWLEEGLPVGVSAGAIVSAAVQVMSQpSMEGKLCVAIIPSFGERYF 299
                  689**************************************************97899***************************99999999999*******988777766....66667788888877755157899************************99**********************************99999987554111111115689***************************************************988777776658899**************7 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.2   7.5e-16   2.5e-13      17     209 ..       3     204 ..       1     293 [. 0.77

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 7.5e-16
    TIGR01124  17 etplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqka...kGv.iaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGen..ydeakakalelaqekg..ltfiapfddplv.iaGqGtvalellrqveedldavfvp.vGGGGliaGvaalvkqllpeikvigveaedsaalkq 209
                  +tpl   +k+++ +k +++ k e l p  s k r   +++ q  ae      k v +  ++Gn    +a+ a++ G + ++ mpet +  +   + a G+evvl  ++     a aka+e+  e g     ++ f +p      + t + e+ r ++  l  vfv+ vG GG ++Gv+ ++k ++pe++ ++ve+ +   l++
  MMETSP1174-20130828|22493_1   3 NTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLItpgKSVlVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKEtaVPGALAKAQEILAELGdeGHMLQQFANPANaKIHRETTGPEIWRDTD-GLVDVFVSgVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLLTA 204
                  699999************************************9999764222445155789*************************999999999*********87651145677777766554331134567777775414578999******998.666777754****************************98766543 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.2     3e-14     1e-11       1     266 [.       4     275 ..       4     296 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 3e-14
    TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeek....krGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGa..dfDeayklaeelaeeegr..vfvhafdDe.fviaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiak.aillLlerakivaegaGavgvaavl 266
                  tpl++ + +++ +++++  kle+l    s k r     i ++ +e+     k   v  ++Gn     a+ a+  g ++ + mPe   +++     ++G ev+L  +   +  a + a+e+ +e g    +++ f ++      + t g ei  d+ + vd+ +  vG GG ++Gv+  +k+++pe++ + ve   ++++  + ++g  k  e+      G+    +      +   lvDe+v ++ +   +    + le    v  +aGa+  aav 
  MMETSP1174-20130828|22493_1   4 TPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLitpgKSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKetAVPGALAKAQEILAELGDegHMLQQFANPaNAKIHRETTGPEIWRDTdGLVDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVE--PMEQMLLTAEKGGEKIGEQGPHKIQGMGAGIV---PEVLDLSLVDEIVPIHSDTAMEmTSRMWLEEGLPVGVSAGAIVSAAVQ 275
                  8999999999999********************999999999998742221455678899***9999999*********************************865116789999**99988754312466777665145567899*****99872568****************************98886..57777777777777777777666667654333...323445778999988766554404456688888888889998888874 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.9     3e-10     1e-07      19     258 ..       3     245 ..       1     292 [. 0.71

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3e-10
    TIGR02991  19 etplveseslsellGvpvllklesrqttGsfklrGatnavlslsdae....raaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGr......sqddaqeeverlvkerGlvmlppfdhadiv.aGqGtlglevveqvpdlalvlvp.lsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaGrpvlveelptladslGGGiGldnrvtfalckelldeivllsed 258
                  +tpl+  + +++ +  ++  kles  +  s k r     +   +++      ++ +v  ++Gn G ala+ a++ g r+++ m e + +++   +  lG ev +  +      +  +aqe +  l  e G  ml  f +++     + t g e+  +   l  v+v  +  GG ++Gv+  +k++kp+ + + v       m  + + G+    e+ p   + +G Gi  +      l  +l+deiv +  d
  MMETSP1174-20130828|22493_1   3 NTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGlitpGKSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTPKetavpgALAKAQEILAELGDE-G-HMLQQFANPANAkIHRETTGPEIWRDTDGLVDVFVSgVGTGGTVTGVSQYIKSIKPELHTVAVE--PMEQMLLTAEKGGEKIGEQGPHKIQGMGAGIVPE-----VLDLSLVDEIVPIHSD 245
                  7889888888888888889999999999999999888777766665411113445677889*****************************************88765111111445677777776665.5.68999999875416789***********99999886366799***************9987764..3344666666666666666666666666666322.....2334556666665555 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   8.1e-10   2.8e-07      15     302 ..       2     291 ..       1     309 [. 0.75

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 8.1e-10
    TIGR02079  15 ketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel....ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavek..egktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaa...vkrvGdlnfkalkkvvdevtlveegavcstildlynkegi.vaePaGalsiaaleels.eeikgktvvcvv 302
                   +tPl + +++++  k +i  k e l    s k r    ++ q  +e+l    + ++v  ++Gn    +a+  r+ g +  + mP t    ++  +   G e + +         a a+a++  ++  ++ ++++ f +++  +  + t + ei  + +   +d+ + +vG GG ++Gv+ y+k++ ++ + + veP     l ++ k ge +  +   + + G     v +v dl      ++vde+++++ +        ++ +eg+ v   aGa+  aa++ +s   ++gk  v+++
  MMETSP1174-20130828|22493_1   2 GNTPLIYLNKVTQGIKGQIVGKLESLGPCSSVKDRLGRSMIDQAEAEGLitpgKSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVV-LTPKETAVPGALAKAQEILAElgDEGHMLQQFANPANAKiHRETTGPEIWRDTDGL-VDVFVSGVGTGGTVTGVSQYIKSIKPELHTVAVEPMEQMLL-TAEKGGEKIGEQGP-HKIQGMGagiVPEVLDL------SLVDEIVPIHSDTAMEMTSRMWLEEGLpVGVSAGAIVSAAVQVMSqPSMEGKLCVAII 291
                  689********************************99999*9999998755546789999**************************998877777777776654.333344566788888887776224578999999987654257899*******9885.***********************************875444.44556666654433.33444330013333333......4667777777777777777777777774445677777777776663466677777766 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.8e-09   6.2e-07      21     147 ..       2     131 ..       1     148 [. 0.77

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.8e-09
    TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltk..alelgnetvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispvkeklv.....talaenakvlaikGdFDdaqdlvkeifedk 147
                  g+t+l+  +k+++ +++ ++  k +++gP  + KDr ++ +    ++  +   g+ +++  tsG+tg a+a  +a+  + +++  +P+  +s v+ +++     + ++   k  a+ G   +aq++++e+ ++ 
  MMETSP1174-20130828|22493_1   2 GNTPLIYLNKVTQGIKG-QIVGKLESLGPCSSVKDRLGRSMIDQAEAegLITPGKSVLVEPTSGNTGIALA-FIARERGYRCILTMPET-MS-VERRMMllalgCEVVLTPKETAVPGALAKAQEILAELGDEG 131
                  68999************.999999*************9988655433226677777999************.9999***********98.66.65554311111455555566688899999999888888643 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05    0.0038      94     147 ..      55     108 ..      43     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
    TIGR01747  94 datfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitd 147
                  ++++v  t Gn G  +a+ a++ G ++++ mp   + er   +   G ev++t 
  MMETSP1174-20130828|22493_1  55 KSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTP 108
                  5788999*******************************************9974 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-05    0.0065     113     166 ..      55     108 ..      41     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-05
    TIGR03528 113 ditfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitd 166
                  + ++v  t Gn G  +a+ a++ g ++++ mP   + er+  + + G+e+++t 
  MMETSP1174-20130828|22493_1  55 KSVLVEPTSGNTGIALAFIARERGYRCILTMPETMSVERRMMLLALGCEVVLTP 108
                  5678999******************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 884.33
//
Query:       MMETSP1174-20130828|22494_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 479.07
//
Query:       MMETSP1174-20130828|22495_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 834.36
//
Query:       MMETSP1174-20130828|22488_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 2107.43
//
Query:       MMETSP1174-20130828|22498_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1079.48
//
Query:       MMETSP1174-20130828|22501_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1174-20130828|22503_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|22507_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|22509_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|22508_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|22512_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       757  (0.184544); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.23s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1109.42
//
Query:       MMETSP1174-20130828|22510_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     9e-111  368.2   0.0     1e-110  368.0   0.0    1.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   9.8e-104  345.5   0.0   1.2e-103  345.2   0.0    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    5.6e-78  260.2   0.0    2.1e-44  149.7   0.0    2.0  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    1.7e-10   37.9   1.4    2.1e-07   27.8   0.1    2.8  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    8.8e-09   33.3   0.6      0.026   12.1   0.0    3.1  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00012   19.0   1.5       0.38    7.5   0.0    3.1  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00084   16.1   0.1     0.0028   14.3   0.0    1.8  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
     0.0016   15.1   0.0      0.022   11.3   0.0    2.2  2  TIGR02028 ChlP: geranylgeranyl reductase
     0.0034   14.4   1.1       0.19    8.7   0.1    2.6  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
  ------ inclusion threshold ------
      0.018   11.9   0.0      0.033   11.1   0.0    1.4  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.0   0.0  2.5e-113    1e-110       1     387 []      26     489 ..      26     489 .. 0.97

  Alignments for each domain:
  == domain 1    score: 368.0 bits;  conditional E-value: 2.5e-113
    TIGR01988   1 divIvGgGlvGlalAlaLassa...dlkvalveakaaek.....akspafdnRvsAlsaasiellekigvwdkl.ekkraqpiqkirvsdagskgalefdaaevg...aeaLgyvvenkvlqqaLlealqekkn..kvtllapaeveelere...........sdaveltlsdgetleakLlvgADGanSkvrqaagikttewnyeqsavvanvkleephqdtAwerFlpegplAlLPlkd.nrsslVwslspeeaeellalseeeflaelnaafgsrlg..................................................aitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatdllnrlfsndfpp.lrllRnlGLrlleklpplkkllikqamg 387
                  di+IvGgG+vG+alA++L +++   + k+ ++e++++++       + ++d R++A+++ s++lle ++vw+++ +++raqp++ ++v+ ++++g++++da++ +   + +Lg++ve++ lq++L+ ++++ ++  k+tll pa++++l+ +               e++ +dg  l+ +L+v+ADGa S++r+aag+ t +w y+q avva+v+le++h+ tA++rFlp+gp+AlLPl d +r+sl+ws++++ a++l++ +e+efl++ln a++++                                                     + ++++r+a  Lsl++ak+yv+ rval+GdAAht+hP+AGQGlNlGl Dv+aLa++l++ +++g+d+g+  +L+ Y++ rr +n+ ++a++d+l+r+f  +++p + ++Rn G+ +l++lpplk+ll++ amg
  MMETSP1174-20130828|22510_1  26 DIAIVGGGVVGAALACRLTQMEsltGAKIIVLESHPPPSldkmmDPNRVPDVRTYAMTPVSVRLLEGLDVWKSIiAANRAQPYDAMQVWHTQGRGSVHLDAHNHAglgQMELGHIVEHTALQASLYDRMKTLHQdgKLTLLSPARMKSLRLDpaknapgsppgPALLEVEGHDGGPLSVRLVVAADGAASPTRKAAGLTTWGWGYGQRAVVATVELEKSHKCTAMQRFLPSGPIALLPLWDdHRASLIWSTKTTIADSLVKADEHEFLDQLNFALDHEGPdrvlnenseggeksifpglpgptsvlskiiktaanaaemtgdlpfkppprVTGVASRRFALDLSLSQAKSYVDWRVALVGDAAHTIHPMAGQGLNLGLGDVEALADILERGAASGRDLGDPGLLSDYDTSRRMANLRMMAILDGLHRIFGDEASPeIGAIRNSGMATLDALPPLKSLLVRFAMG 489
                  9******************99999999**********999998755569***********************963778**********************9987667799********************999899**************999********999999************************************************************************998***********************************887*************************************************8889999*********************************************************************************************998765499************************97 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.2   0.0  2.9e-106  1.2e-103       1     436 [.      25     483 ..      25     484 .. 0.88

  Alignments for each domain:
  == domain 1    score: 345.2 bits;  conditional E-value: 2.9e-106
    TIGR01989   1 lDvvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhi.ekdRikkfkklqvwdscskalieferkdv....keelafiiEndvilasllerlkeeksd.nvkvknkaklksvtlpkksp..ndns..nlvkikledgetlktklliGADGanSkvRkaanikvtgwnYnqsavvatlkleeatenevawqRFlpsGPiAlLPls.dnlsslvWstseeeakrlkslpeeeFvdalNaaldleysdlnklelvdea...........veklnedikfrte....erkseeqvPPkvievvdksRaaFPLklkhadeYvtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNvallalvdklkklYstdfpp.vvalRtlglnltnkisplKnli 436
                  +D++ivGgG+vG+alA+ l++++sl   k+ +l+++  p+l  +k++ ++ v++ R  ++tp s++l++ +++w+ i   +R ++++ +qvw + +++++++++++     + el+ i+E + ++asl++r+k  ++d + +++ +a++ks++l   ++   ++    l +++ +dg  l+++l++ ADGa S +Rkaa++ + gw Y q avvat++l e++++ +a qRFlpsGPiAlLPl  d+ +sl+Wst+   a  l++ +e eF d+lN ald e +d    e  +             ++ l + ik  ++    + +  ++ PP+v++v ++ R a  L+l +a++Yv  rvALvGDAAH++HP+AGqG+NlG++Dve+L+  l++++ +G dlG+  +L++y++ r+ +N+ ++a++d+l++++  +++p + a+R  g+ + ++++plK l+
  MMETSP1174-20130828|22510_1  25 YDIAIVGGGVVGAALACRLTQMESLTGAKIIVLESHPPPSL--DKMMDPNRVPDVRTYAMTPVSVRLLEGLDVWKSIiAANRAQPYDAMQVWHTQGRGSVHLDAHNHaglgQMELGHIVEHTALQASLYDRMKTLHQDgKLTLLSPARMKSLRLDPAKNapGSPPgpALLEVEGHDGGPLSVRLVVAADGAASPTRKAAGLTTWGWGYGQRAVVATVEL-EKSHKCTAMQRFLPSGPIALLPLWdDHRASLIWSTKTTIADSLVKADEHEFLDQLNFALDHEGPDRVLNENSEGGeksifpglpgpTSVLSKIIKTAANaaemTGDLPFKPPPRVTGVASR-RFALDLSLSQAKSYVDWRVALVGDAAHTIHPMAGQGLNLGLGDVEALADILERGAASGRDLGDPGLLSDYDTSRRMANLRMMAILDGLHRIFGDEASPeIGAIRNSGMATLDALPPLKSLL 483
                  8**********************************888888..5799***************************9862689**********************998645557899******************9876537889999*******985433224443114667788899******************************************.5678899****************61568*******************************98877754333332223347888888766666666666555556677788999*****9875.699*****************************************************************************************999876599*****************987 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   5.1e-47   2.1e-44       1     245 [.      26     298 ..      26     304 .. 0.90
   2 !  108.6   0.0   1.6e-34   6.4e-32     258     382 .]     361     489 ..     357     489 .. 0.95

  Alignments for each domain:
  == domain 1    score: 149.7 bits;  conditional E-value: 5.1e-47
    TIGR01984   1 dviivGgglvGlslAlaLsrks...klkialieaksaeaa.kssf.....darslalsagskqileklgiwekl..ekeatpikdihvsdrgafgalelraee...valpaLGyVveladlkqallkrlaekk...kiklyapaelkeierekde...........aevkldneqkleakLlvaAdGanskvreslsiaeeevdyeqtalianvkvekphenlAfErFteeGplAlLPlkdayrlslvwclkkeqaeelanlsdaeflaeLqk 245
                  d++ivGgg+vG++lA  L +       ki ++e++ + +  k ++     d r+ a++  s+ +le l++w+++  +++a+p   ++v  ++  g ++l+a++   +++  LG++ve + l++ l++r+++ +   k++l++pa++k++  + ++            ev+ +++  l+ +L+vaAdGa s  r+++ + +    y q a++a v++ek h+ +A+ rF ++Gp+AlLPl d++r sl+w++k + a++l++++++efl +L+ 
  MMETSP1174-20130828|22510_1  26 DIAIVGGGVVGAALACRLTQMEsltGAKIIVLESHPPPSLdKMMDpnrvpDVRTYAMTPVSVRLLEGLDVWKSIiaANRAQPYDAMQVWHTQGRGSVHLDAHNhagLGQMELGHIVEHTALQASLYDRMKTLHqdgKLTLLSPARMKSLRLDPAKnapgsppgpalLEVEGHDGGPLSVRLVVAADGAASPTRKAAGLTTWGWGYGQRAVVATVELEKSHKCTAMQRFLPSGPIALLPLWDDHRASLIWSTKTTIADSLVKADEHEFLDQLNF 298
                  8****************9887657799********9988744333555779*********************9866789********************877622267899**************999876542227************99999999*******88888889999**********************************************************************************************9975 PP

  == domain 2    score: 108.6 bits;  conditional E-value: 1.6e-34
    TIGR01984 258 gerkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledar...kdlGeaallqeylkerkeDraatigltdeLvrlfsnkl.lllralRnlgLlalenlpplkkrlakkamg 382
                  ++r a  L+l++a+ +v+ rv+l+g+aA+t+hP+AgQG+NlGl Dv++La++le+     +dlG+  ll  y  +r++ + +++ + d+L r+f+ ++ + ++a+Rn g+ +l+ lpplk+ l++ amg
  MMETSP1174-20130828|22510_1 361 SRRFALDLSLSQAKSYVDWRVALVGDAAHTIHPMAGQGLNLGLGDVEALADILERGAasgRDLGDPGLLSDYDTSRRMANLRMMAILDGLHRIFGDEAsPEIGAIRNSGMATLDALPPLKSLLVRFAMG 489
                  678888899*********************************************988889***********************************8762679**************************8 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00057      0.23       2      24 ..      26      48 ..      25      64 .. 0.86
   2 ?   -1.7   0.0      0.45   1.9e+02     137     163 ..     193     219 ..     190     225 .. 0.87
   3 !   27.8   0.1     5e-10   2.1e-07     291     358 ..     370     439 ..     362     446 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00057
    TIGR03219  2 rvaiiGGGiaGvalalelskssh 24
                  +ai+GGG+ G ala  l++   
  MMETSP1174-20130828|22510_1 26 DIAIVGGGVVGAALACRLTQMES 48
                 59***************998765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.45
    TIGR03219 137 evsfedGteyradlligadGiksalrd 163
                  ev+ +dG    + l+++adG  s +r+
  MMETSP1174-20130828|22510_1 193 EVEGHDGGPLSVRLVVAADGAASPTRK 219
                  67778999999************9997 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 5e-10
    TIGR03219 291 laelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedl..pellevyddvrrer 358
                  l++  +yv+ rval+Gdaah++ p  G G   Gl d   la +le   ++ +dl  p ll+ yd  rr  
  MMETSP1174-20130828|22510_1 370 LSQAKSYVDWRVALVGDAAHTIHPMAGQGLNLGLGDVEALADILERGAASGRDLgdPGLLSDYDTSRRMA 439
                  667789****************************************999999984467999999999875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00033      0.13       1      32 [.      25      60 ..      25      67 .. 0.84
   2 !    8.2   0.0   0.00094      0.39     130     158 ..     196     224 ..     189     251 .. 0.70
   3 !   12.1   0.0   6.2e-05     0.026     259     287 ..     375     403 ..     359     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
    TIGR02032  1 yDvvvvGaGpaGssaAlrlak....kGlrVlllekk 32
                 yD+ +vG+G  G+++A rl +    +G+++++le +
  MMETSP1174-20130828|22510_1 25 YDIAIVGGGVVGAALACRLTQmeslTGAKIIVLESH 60
                 9*****************988555568888888876 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00094
    TIGR02032 130 edekkevtakivigAdGakskvakklglk 158
                  + + + ++ ++v++AdGa s+++k+ gl 
  MMETSP1174-20130828|22510_1 196 GHDGGPLSVRLVVAADGAASPTRKAAGLT 224
                  445678999***************99943 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 6.2e-05
    TIGR02032 259 ktvtgnvllvGDAAglVkPltGeGIayam 287
                  + v  +v lvGDAA ++ P+ G G++ ++
  MMETSP1174-20130828|22510_1 375 SYVDWRVALVGDAAHTIHPMAGQGLNLGL 403
                  45566799****************99875 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0022      0.89       1      23 [.      25      47 ..      25      60 .. 0.77
   2 ?    2.8   0.0     0.025        10     140     164 ..     200     224 ..     192     251 .. 0.77
   3 !    7.5   0.0   0.00093      0.38     250     288 ..     365     403 ..     356     459 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0022
    TIGR02023  1 ydvlviGggpsGaaaaetLakag 23
                 yd++++Ggg+ Gaa a  L+++ 
  MMETSP1174-20130828|22510_1 25 YDIAIVGGGVVGAALACRLTQME 47
                 89***************999864 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.025
    TIGR02023 140 ksveadvviGaDGakskvakelglg 164
                   ++ +++v+ aDGa s++ k+ gl+
  MMETSP1174-20130828|22510_1 200 GPLSVRLVVAADGAASPTRKAAGLT 224
                  678899***********98876654 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.00093
    TIGR02023 250 aapiPlkPrkrldservvLvGDaaGlvakasGeGiyyam 288
                  a  + l   k++ + rv+LvGDaa  + + +G G+   +
  MMETSP1174-20130828|22510_1 365 ALDLSLSQAKSYVDWRVALVGDAAHTIHPMAGQGLNLGL 403
                  556666777888999*******************86655 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.59   2.4e+02       5      34 ..      27      60 ..      25     140 .. 0.67
   2 !   14.3   0.0   6.8e-06    0.0028     280     315 ..     380     415 ..     368     430 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.59
    TIGR02360  5 vaiigaGpsGlllg....qllhkaGidavilerk 34
                 +ai+g+G  G  l+    q+   +G + ++le +
  MMETSP1174-20130828|22510_1 27 IAIVGGGVVGAALAcrltQMESLTGAKIIVLESH 60
                 8999999988765411115555678888888865 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.8e-06
    TIGR02360 280 rlflaGdaahivpptGakGlnlaasdvaylyealle 315
                  r+ l+Gdaah + p   +Glnl   dv+ l + l +
  MMETSP1174-20130828|22510_1 380 RVALVGDAAHTIHPMAGQGLNLGLGDVEALADILER 415
                  7889**************************998876 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.074        30       4     256 ..      28      59 ..      25      75 .. 0.59
   2 !   11.3   0.0   5.3e-05     0.022     269     346 ..     378     455 ..     372     465 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.074
    TIGR02028   4 avvgggpagasaaetlakagiqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmkvispsniavdigrtlkeheyigmvrrevldsflreraadagatlinglvlklelpedaddpytlhyveedktgasgtkktlevdavigadgansrvakeidagdydyaiafqerirlpdekmayyedlaemyvgddvspdfygwvfpkcdhvavgtgtvaakdeikklqagiraraaakvaggkiirvea 256
                  a+vggg  ga+ a  l++                                                                                                                                                                                                                              + ++g kii +e+
  MMETSP1174-20130828|22510_1  28 AIVGGGVVGAALACRLTQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MESLTGAKIIVLES 59 
                  666666666666655554.............................................................................................................................................................................................................................33334444444444 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.3e-05
    TIGR02028 269 vgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkkvieegdlkkylkrwdkeyrptyrvldllqrvfy 346
                    rvalvgdaa ++   +g+g+ +        a+ +  +  +g+ + + g l  y      + +  + +ld l r+f 
  MMETSP1174-20130828|22510_1 378 DWRVALVGDAAHTIHPMAGQGLNLGLGDVEALADILERGAASGRDLGDPGLLSDYDTSRRMANLRMMAILDGLHRIFG 455
                  569****************************************************99888888889999**9999994 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00046      0.19       1      33 [.      26      62 ..      26      67 .. 0.79
   2 ?   -1.8   0.0       0.7   2.9e+02     119     161 ..     194     234 ..     190     243 .. 0.75
   3 ?    3.5   0.0     0.016       6.8     262     295 ..     380     413 ..     365     440 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00046
    TIGR01790  1 DliviGgGlAglaiAlela....kpglrvqlieaapk 33
                 D++++GgG  g a+A +l+      g ++ ++e++p+
  MMETSP1174-20130828|22510_1 26 DIAIVGGGVVGAALACRLTqmesLTGAKIIVLESHPP 62
                 99****************9544335667777777765 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.7
    TIGR01790 119 vecaggqriqarlVidargfkalvqyekaslavgfQaayGvev 161
                  ve+++g  ++ rlV+ a g+++    +ka+    +   yG+ +
  MMETSP1174-20130828|22510_1 194 VEGHDGGPLSVRLVVAADGAAS--PTRKAAGLTTWGWGYGQRA 234
                  6788899999*********999..5566666666666677655 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.016
    TIGR01790 262 kvvavGaaAglvHPatgYsvaralseApklaaai 295
                  +v+ vG aA  +HP++g  +   l + ++la+ +
  MMETSP1174-20130828|22510_1 380 RVALVGDAAHTIHPMAGQGLNLGLGDVEALADIL 413
                  6999*************99999999999998877 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05     0.033       1      33 [.      25      61 ..      25      64 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.1e-05
    TIGR03364  1 tdvvvvGaGivGlahAlaaar....rGlkVtvierss 33
                 +d+++vG+G+vG a A + ++     G k++v+e ++
  MMETSP1174-20130828|22510_1 25 YDIAIVGGGVVGAALACRLTQmeslTGAKIIVLESHP 61
                 79**************998653333699999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.64
# Mc/sec: 1010.54
//
Query:       MMETSP1174-20130828|22515_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 381.70
//
Query:       MMETSP1174-20130828|22518_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-09   33.8   0.0    3.5e-09   33.6   0.0    1.1  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
      4e-08   29.5   0.0    4.9e-08   29.2   0.0    1.1  1  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.7e-12   3.5e-09     254     355 ..      67     172 ..      33     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.7e-12
    TIGR01447 254 rhheenplplDvlvvDEaSMvdlelmakLlealkketk..........LIllGDknQLasveaGavlgdllelaeegsllaellgvatlkkeasktaepladnlvmLkkshR 355
                  rh+  +  +  vl++DE+SM+d++l+ kL + +   ++          L+l GD  QL++v++   +  ++  a++  ++  l ++  l+++ +++ +      v+L +  R
  MMETSP1174-20130828|22518_1  67 RHCVARWRQAKVLIIDEISMMDADLFDKLSQ-VGSRARndsrpfggvqLVLCGDFFQLPPVGIDRNGVRFCFEAKH--WSSALETCVVLRQIFRQQGD---AAFVRLLNDMR 172
                  67777888899*****************977.5555556888********************99888888877774..44444444444444444444...12233333333 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-11   4.9e-08     416     511 ..      75     186 ..      41     211 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.4e-11
    TIGR01448 416 dadllivDEvsmvdtwllssllaavpdda..........rlllvGDadqLPsVgaGq.....vlkdLiqsklipv.vrLtkvyRqaeessiitlAhkikqGeaP.akkDfkql 511
                  +a++li+DE+sm+d  l+ +l + v + a          +l+l GD  qLP+Vg  +      +++   s+++++ v L +++Rq+ + + ++l   ++ Ge+   ++++ ++
  MMETSP1174-20130828|22518_1  75 QAKVLIIDEISMMDADLFDKLSQ-VGSRArndsrpfggvQLVLCGDFFQLPPVGIDRngvrfCFEAKHWSSALETcVVLRQIFRQQGDAAFVRLLNDMRVGELSqHTTELLKK 186
                  6889**************99755.4443312222222337*************9654222223556555666665378************************97423333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.57
# Mc/sec: 603.05
//
Query:       MMETSP1174-20130828|22521_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1174-20130828|22522_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.54
# Mc/sec: 276.20
//
Query:       MMETSP1174-20130828|22524_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 676.98
//
Query:       MMETSP1174-20130828|22525_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.6   1.1     0.0023   14.9   0.6    1.6  1  TIGR03805 beta_helix_1: parallel beta-helix repeat-containing protein


Domain annotation for each model (and alignments):
>> TIGR03805  beta_helix_1: parallel beta-helix repeat-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.6   5.7e-07    0.0023      61     168 ..      29     145 ..       1     158 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.7e-07
    TIGR03805  61 tskdvtledlaveeakgdGvkvkgsdkviirrvrvewteapkssnGayGiypvestnvlvedsevrgaada..........Gi.yvGqsenivvrnnvakeNvaGieiENsknadvknN 168
                   s+dv++ d++++++     +  + d+v ++ v v+  +   ++    G  p++s+nvl+eds+ +ga d           G+ y   s ni+vrn + +  vaG+ i   ++  v n 
  MMETSP1174-20130828|22525_1  29 YSNDVAVYDVTLRNSPFWTNHFYDCDGVHVKGVLVD--NPLVDAPNTDGFDPDSSRNVLIEDSVYYGADDCvaiksgwdcfGVdYNTPSVNITVRNLTCNGYVAGVAIGSETSGGVSNV 145
                  567777777777777777777778888888877775..3444444466999*****************9964344433333456777899****************9977666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 807.02
//
Query:       MMETSP1174-20130828|22520_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 1504.06
//
Query:       MMETSP1174-20130828|22523_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 1520.15
//
Query:       MMETSP1174-20130828|22532_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.8   0.4     0.0016   14.7   0.3    1.0  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   3.8e-07    0.0016       9      53 ..       2      42 ..       1      48 [. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.8e-07
    TIGR04154  9 lialwiRilpysavisegevlfsgnDpwYhlReieytvenfpntl 53
                 ++a+ iR+    av++ g  ++ + Dpw+++R +ey+v+n p+  
  MMETSP1174-20130828|22532_1  2 IVAFSIRLH---AVFTYG-RVIHEFDPWFNYRATEYLVNNGPAKF 42
                 577788877...666776.56799****************99753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|22533_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 646.29
//
Query:       MMETSP1174-20130828|22535_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1635.72
//
Query:       MMETSP1174-20130828|22541_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 387.72
//
Query:       MMETSP1174-20130828|22540_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 985.79
//
Query:       MMETSP1174-20130828|22542_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|22547_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|22543_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-87  289.9  10.2    9.4e-87  289.6   7.1    1.0  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    2.5e-28   96.6   0.1    2.5e-28   96.6   0.1    1.7  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    6.1e-10   35.1   0.0    8.3e-10   34.6   0.0    1.1  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    2.8e-09   33.5   0.1    3.9e-09   33.0   0.0    1.1  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.9e-07   26.6   0.0    4.3e-07   26.0   0.0    1.1  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    1.9e-06   24.8   0.0    3.3e-06   24.1   0.0    1.3  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.3e-05   22.7   0.0    1.9e-05   22.2   0.0    1.2  1  TIGR00338 serB: phosphoserine phosphatase SerB
    0.00026   17.0   0.0    0.00046   16.2   0.0    1.3  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    0.00032   18.2   0.0    0.00065   17.2   0.0    1.4  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
    0.00083   15.0   0.0     0.0011   14.6   0.0    1.1  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
     0.0011   15.6   0.4     0.0021   14.6   0.1    1.6  2  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
     0.0043   14.2   0.0     0.0065   13.6   0.0    1.2  1  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
     0.0052   13.5   0.0     0.0073   13.0   0.0    1.1  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
     0.0064   12.5   0.1       0.01   11.9   0.1    1.3  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
     0.0089   13.9   0.0      0.014   13.3   0.0    1.3  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
  ------ inclusion threshold ------
      0.012   11.0   0.1      0.022   10.1   0.1    1.3  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type


Domain annotation for each model (and alignments):
>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.6   7.1   3.7e-89   9.4e-87     719    1051 ..       2     348 ..       1     354 [. 0.90

  Alignments for each domain:
  == domain 1    score: 289.6 bits;  conditional E-value: 3.7e-89
    TIGR01652  719 viDGksLklaLkee.lekeflelalkckavlcCRvsPsqKaavvklvkkslsk..vtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigqFrfLekLlLvHGrwsYkRisklilyffyknlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivlGvldqdvsaslllkyPqLYkegikgkefsvkvflvwmldglyqslvifllallvlkleav.......v..ssG..evedllslgvivftalvvvvnlkialeierwnkisliaiagsilvvlifvivyseilp.seefykaaarvlkslvfwlvllvvvlisllprftlkalqklfkpe 1051
                   ++DG sL  + k+  ++ ++l++a+ c+ v++CRvsP+qK  +v+lv+ +l +  vtlaigdGaNDV+miqeA++GvGisG+EG+qAv++sDfai+qF+fL++Ll+vHGrw+Y+Risk+i+y f+kn++l++il+++++  + sgq+lye ++ + +n +f  +P++++G +dqd+s+++ + +P +Y +g +++  +  v+++ +l + ++++++++l +l+++ +a+       v  ++G    +dl+ +g +v++a+++ +++k+a++ ++wn++s++ +++s+ +++ f++ y++i   s++f ++++++l+ + fwl  +++++i  + + +l ++  +f   
  MMETSP1174-20130828|22543_1    2 IVDGPSLFTIFKHPeMKAKLLRIACFCRVVVACRVSPKQKQLIVDLVQTGLARrpVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLLIVHGRWNYRRISKVIVYSFHKNIVLTIILAFWTFNCALSGQSLYEAYVYTGFN-FFLGVPILLIGFFDQDLSDKVAMANPGVYSVGREKRDMNPMVMAMACLRATVEAVLLYYLCYLCYTGGAAhsynpagVwgWTGrnGEADLYAFGLTVYSAMLFGMLVKVAIMHYTWNWYSVVGMIFSLALYFGFLFSYGSIRYlSYDFVWVVYHTLSMVPFWLLAVLLPTIIGIVDALLGFASATFFSD 348 
                   89*****99988755**********************************7654338******************************************************************************************************.67889******************************************************9999998766422222222235565445679*************************************************99888*******************99999887766666666666666555 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.1   9.6e-31   2.5e-28     363     465 ..      30     140 ..      23     150 .. 0.86
   2 ?   -4.8   2.2       5.2   1.3e+03     142     172 ..     258     288 ..     252     330 .. 0.64

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 9.6e-31
    TIGR01494 363 lglfarvsPeqKaeivellkk...kgevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465
                  + + +rvsP+qK+ iv l++    ++ v+++iGDG+ND++++++A +G++is      A + +d++++++  +l +ll+++Gr++y ri+k+i+y+++kn++l+i+l+++++
  MMETSP1174-20130828|22543_1  30 VVVACRVSPKQKQLIVDLVQTglaRRPVTLAIGDGANDVGMIQEAQIGVGISghegrqAVNNSDFAIAQF-KFLKRLLIVHGRWNYRRISKVIVYSFHKNIVLTIILAFWTF 140
                  4578****************6333689************************75555558899********.999***************************99888765543 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 5.2
    TIGR01494 142 allllallvfllvlielktflkiilralill 172
                   ++l+ +lv ++++++ ++++ ++ + ++l+
  MMETSP1174-20130828|22543_1 258 SAMLFGMLVKVAIMHYTWNWYSVVGMIFSLA 288
                  5555555566666666666555544444433 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.2e-12   8.3e-10     757     834 ..       3      87 ..       2     126 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3.2e-12
    TIGR01657 757 lsGkalavlleksk..ellkklllkvk..VfARvaPeqKeelvetlkk...ldytvlmcGDGaNDcgALkqAdvGisLseaeAsv 834
                  ++G++l +++++ +    l ++   ++  V  Rv+P+qK+ +v  ++       ++l +GDGaND+g +++A++G+ +s  e+  
  MMETSP1174-20130828|22543_1   3 VDGPSLFTIFKHPEmkAKLLRIACFCRvvVACRVSPKQKQLIVDLVQTglaRRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQ 87 
                  57888888887765454455555444411557*************9973224568999*******************99988765 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.5e-11   3.9e-09     599     710 ..      24     139 ..      16     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1.5e-11
    TIGR01517 599 dkilpklrvlaRssPlDkqlLvelkklg....evvavtGDGtnDaPaLkladvGfamgiaGte..vakeasDiilldDnfasivr.avlWGRavydsikkflqfqLtvnvv.avilafvg 710
                  ++ + +++v  R sP+ kql+v+l ++g     v    GDG+nD   +++a++G+  gi+G e   a+++sD  + +  f    r  ++ GR  y  i+k + +    n+v ++ilaf +
  MMETSP1174-20130828|22543_1  24 IACFCRVVVACRVSPKQKQLIVDLVQTGlarrPVTLAIGDGANDVGMIQEAQIGV--GISGHEgrQAVNNSDFAIAQFKFL--KRlLIVHGRWNYRRISKVIVYSFHKNIVlTIILAFWT 139
                  566779999***************98653222688888****************7..5566553379******99876665..5525889*******************87467888854 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.7e-09   4.3e-07     655     772 ..      24     142 ..      12     149 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.7e-09
    TIGR01106 655 ilkehteivfartspqqkliivegcqrqgaivavt...gdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivni 772
                  i +    +v  r sp+qk +iv+  q   a   vt   gdg nd   ++ a+igv +       + + +d+ + +  f   +  v +gr  +  + k i+y++ +ni  +t  l f ++n 
  MMETSP1174-20130828|22543_1  24 IACFCRVVVACRVSPKQKQLIVDLVQTGLARRPVTlaiGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLLIV-HGRWNYRRISKVIVYSFHKNIV-LTIILAFWTFNC 142
                  55555667889************999766644443334****************9654444445678899999999999887655.7*******************96.677777766665 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-08   3.3e-06     430     537 ..      32     141 ..      23     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.3e-08
    TIGR01525 430 vvaellPedKlakvkklqee..egkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrdd.lssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllp 537
                  v + ++P++K  +v  +q+   ++++++ +GDG ND   +  A++G+ ++ +    a++ +D+ + + + l+++  +i   r   ++i + +v ++  n+v+ ++ a+  ++
  MMETSP1174-20130828|22543_1  32 VACRVSPKQKQLIVDLVQTGlaRRPVTLAIGDGANDVGMIQEAQIGVGISgHEGRQAVNNSDFAIAQFKfLKRL--LIVHGRWNYRRISKVIVYSFHKNIVLTIILAFWTFN 141
                  6789*************988744449999********************999999**********996413333..466788888889999999998888887776665554 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.6e-08   1.9e-05     169     204 ..      56      91 ..      33     106 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 7.6e-08
    TIGR00338 169 ektvavGDGanDlsmikaAglgiafnakpvlkekad 204
                    t+a+GDGanD+ mi++A++g++  + + ++ + +
  MMETSP1174-20130828|22543_1  56 PVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNN 91 
                  4589********************999998887654 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06   0.00046     522     618 ..      30     130 ..      22     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.8e-06
    TIGR01116 522 alvfsrvePshklklvelkeldq....ivamtGdGvndaPalkkadiGiam.GsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniG 618
                   +v +rv P++k+ +v+l + +     ++   GdG nd   +++a+iG+ + G     a + sd+ +a   f   +  v+ Gr  y+ + + i y    ni 
  MMETSP1174-20130828|22543_1  30 VVVACRVSPKQKQLIVDLVQTGLarrpVTLAIGDGANDVGMIQEAQIGVGIsGHEGRQAVNNSDFAIAQFKFLKRLLIVH-GRWNYRRISKVIVYSFHKNIV 130
                  57889*******99998877653223388889*****************8736666789999*******99999888775.9***********999999983 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.5e-06   0.00065     207     231 ..      58      82 ..      42      91 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.5e-06
    TIGR00099 207 viaiGDseNDieMleaagvgvamgn 231
                  + aiGD+ ND+ M++ a++gv  + 
  MMETSP1174-20130828|22543_1  58 TLAIGDGANDVGMIQEAQIGVGISG 82 
                  89******************97665 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.2e-06    0.0011     560     657 ..      25     124 ..      13     142 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.2e-06
    TIGR01522 560 evvdkvavfaraspehklkivkalqk...rGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfq 657
                   +  +v+v  r sp++k  iv  +q    r  v    GdG nd   ++ a+iGv +  +    a + +d  +++ +f   l  i  G+  +  i   i + 
  MMETSP1174-20130828|22543_1  25 ACFCRVVVACRVSPKQKQLIVDLVQTglaRRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLL-IVHGRWNYRRISKVIVYS 124
                  467899***********99998777433256778888*****************9855444556677888877777766654.335666666666666655 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2     3e+02     179     205 ..       9      35 ..       7      37 .. 0.85
   2 !   14.6   0.1   8.3e-06    0.0021     385     459 ..      57     130 ..      29     148 .. 0.65

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.2
    TIGR01512 179 ialvssllvalvlLvvasPCaLvisvp 205
                  ++++++  + + lL +a+ C +v++  
  MMETSP1174-20130828|22543_1   9 FTIFKHPEMKAKLLRIACFCRVVVACR 35 
                  677888899999************975 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 8.3e-06
    TIGR01512 385 evamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpe.aiklarktrrivkqnvvlaltiilv 459
                   ++ +GDG ND   + +A++g+ +  +    a++ +D ++ + +   l++ +i ++r   r +++ +v +    +v
  MMETSP1174-20130828|22543_1  57 VTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKF--LKRlLIVHGRWNYRRISKVIVYSFHKNIV 130
                  4678********************9999999*******9998443..33312334444444455555555443333 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.5e-05    0.0065     193     227 ..      53      87 ..      23     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.5e-05
    TIGR01486 193 ekaikvvglGDspnDlpllevvdlavvvkgkdges 227
                    + +++++GD+ nD+ +++ + + v + g++g +
  MMETSP1174-20130828|22543_1  53 ARRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQ 87 
                  34789***********************9998765 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.8e-05    0.0073     410     503 ..      32     131 ..      19     146 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.8e-05
    TIGR01511 410 vlaevlPedKaakvkelq.....ekkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllndlkdvataielsrktlkkikqNllwalgYNvia 503
                  v   v+P++K   v  +q     + + + +GDG ND   + +a++g+ i+ +    a++ +d+ + +       +i   r  +++i + +++++  N++ 
  MMETSP1174-20130828|22543_1  32 VACRVSPKQKQLIVDLVQtglarRPVTLAIGDGANDVGMIQEAQIGVGISgHEGRQAVNNSDFAIAQFKFLKRLLIVHGRWNYRRISKVIVYSFHKNIVL 131
                  67789999998777665522211346789****************9998623455688888887654333333345667888888888888888888764 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   3.9e-05      0.01     517     619 ..      35     140 ..      26     220 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
    TIGR01647 517 evfPeHkyeivealqk...rghlvgmtGDGvnDaPaLkkAdvGiAvagAt.DAArsaaDivltepGlsviveA.ikesRkiFqRmksyviYrvaltlrivvflallil 619
                   v P+ k  iv+++q+   r  ++   GDG+nD+  ++ A++G+ ++g     A   +D  + +  +  +    i++ R  ++R+++ ++Y+    + + + la +++
  MMETSP1174-20130828|22543_1  35 RVSPKQKQLIVDLVQTglaRRPVTLAIGDGANDVGMIQEAQIGVGISGHEgRQAVNNSDFAIAQ--FKFLKRLlIVHGRWNYRRISKVIVYSFHKNIVLTIILAFWTF 140
                  578999999***999733245556667*******************996413455556655544..455554315667888888888888877766555544444443 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.5e-05     0.014     187     219 ..      46      78 ..      39      80 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.5e-05
    TIGR01484 187 alleelnlkkeeilafGDsgNDeemlevaglav 219
                  +l+++  + ++ +la+GD++ND+ m++ a  +v
  MMETSP1174-20130828|22543_1  46 DLVQTGLARRPVTLAIGDGANDVGMIQEAQIGV 78 
                  688888899******************888776 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   8.6e-05     0.022     670     772 ..      31     135 ..      19     143 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8.6e-05
    TIGR01523 670 lviarcapqtk...vkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlll 772
                  +v  r +p+ k   v ++++   r+  +   gdg nd   ++ a++g+ +       a + sd  +++  f   l     gr  +  i k ++  + +n+  +++l
  MMETSP1174-20130828|22543_1  31 VVACRVSPKQKqliVDLVQTGLARRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLLI-VHGRWNYRRISKVIVYSFHKNIVLTIIL 135
                  4556889988833344555444566666678****************98866666678899*****99999988764.5799999999999888888887655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 1024.14
//
Query:       MMETSP1174-20130828|22545_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1106.68
//
Query:       MMETSP1174-20130828|22544_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1287.70
//
Query:       MMETSP1174-20130828|22548_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1435.38
//
Query:       MMETSP1174-20130828|22550_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|22552_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1174-20130828|22554_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 612.43
//
Query:       MMETSP1174-20130828|22551_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1106.68
//
Query:       MMETSP1174-20130828|22556_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 583.31
//
Query:       MMETSP1174-20130828|22557_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-35  118.3   0.0    1.1e-34  117.9   0.0    1.0  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.0   2.7e-38   1.1e-34      93     282 ..     112     303 ..      85     316 .. 0.93

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 2.7e-38
    TIGR01327  93 egntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlay..DPyi.seekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAst 282
                   + + s aE+ +a  l   +k+ +  k+  e+kW++  f+   l gkt+G +G+G iG++ a+ a a+gmkvla   DP   +++ +e++ +   ++  el+a aD++   +P t+et ++ g+ e+  mK++ + + + RG ++dE+AL++ leeg++++aalDvf++EP   +++l + +n+++t+H +  t
  MMETSP1174-20130828|22557_1 112 GAFSASLAEYVMASALHFNKKFSTCAKNRAERKWDK--FVMPVLEGKTIGFLGFGSIGQKTATLASAFGMKVLALrrDPGQsPPSGFEDVEMYSPDQKLELFAAADFVVSVLPGTPETTDFCGAAEFGAMKPSGVFISVGRGTVVDEEALADCLEEGRIAGAALDVFKTEPLPeSSRLWSCENLIMTAHNADYT 303
                  5667899****************************9..***********************************97669965167899*****99999999***********************************************************************87589*************87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1112.01
//
Query:       MMETSP1174-20130828|22562_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|22558_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-13   46.2   0.3    6.5e-13   45.8   0.2    1.2  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    9.5e-09   32.1   0.0    9.5e-09   32.1   0.0    1.5  2  TIGR00717 rpsA: ribosomal protein S1
    1.7e-07   27.8   0.3    2.3e-07   27.5   0.2    1.1  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    0.00069   15.8   0.2     0.0014   14.8   0.1    1.4  1  TIGR02063 RNase_R: ribonuclease R
     0.0083   14.1   0.6      0.018   13.1   0.4    1.5  1  TIGR00202 csrA: carbon storage regulator
  ------ inclusion threshold ------
      0.015   12.7   0.2      0.028   11.9   0.2    1.4  1  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.2   9.6e-16   6.5e-13     616     678 ..      50     113 ..      43     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 9.6e-16
    TIGR03591 616 vevgkvyegkvvkiadfgafvellp.gkdglvhiSelaeervekvedvlkegdevkvkvleidk 678
                  +e+ ++++g v+ki+ +g fv++ +  k+glvh+S+l+++rve+v++ +++gd+v vkv+ +d 
  MMETSP1174-20130828|22558_1  50 PELFSIHKGAVAKIEAYGCFVSIQGfRKQGLVHVSHLTDTRVEDVNECVSVGDDVFVKVIGVDV 113
                  5677899****************984689******************************99884 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.4e-11   9.5e-09     191     257 ..      56     131 ..      42     148 .. 0.69
   2 ?   -6.3   2.4         6   4.1e+03      84      97 ..     256     269 ..     245     274 .. 0.35

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.4e-11
    TIGR00717 191 vkGvVknitdfgafvdlggvd..gllhitdlswkrvkhPseivevgdevkvkvikvDkekk.......rislslkq 257
                   kG V +i+ +g fv  +g++  gl+h++ l+  rv+  +e+v vgd+v vkvi vD + +       +isls+k 
  MMETSP1174-20130828|22558_1  56 HKGAVAKIEAYGCFVSIQGFRkqGLVHVSHLTDTRVEDVNECVSVGDDVFVKVIGVDVDSTggdrrgaKISLSMKY 131
                  4788888888888888888744488888888888888888888888888888887775432111112256666655 PP

  == domain 2    score: -6.3 bits;  conditional E-value: 6
    TIGR00717  84 kaqrkeakikleka 97 
                  k ++k++ +k++k+
  MMETSP1174-20130828|22558_1 256 KSKKKHKHKKEKKH 269
                  12222222222222 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   3.3e-10   2.3e-07     644     711 ..      48     112 ..      42     127 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 3.3e-10
    TIGR02696 644 tlpevgerflgtvvkttafgafvsllp.gkdgllhiseirkladgkrvekvedvlsvgekikveiadid 711
                  + pe+ + + g+v k  a+g+fvs+    k+gl+h+s   +l+d  rve+v++ +svg+ + v++  +d
  MMETSP1174-20130828|22558_1  48 EIPELFSIHKGAVAKIEAYGCFVSIQGfRKQGLVHVS---HLTD-TRVEDVNECVSVGDDVFVKVIGVD 112
                  5688888899**************9863589******...5555.69****************998666 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     2e-06    0.0014     632     665 ..      56      89 ..      52     117 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-06
    TIGR02063 632 fegvissvtsfGlFveLeentieGLvhissLkdd 665
                   +g ++++ ++G Fv ++ +  +GLvh+s+L+d 
  MMETSP1174-20130828|22558_1  56 HKGAVAKIEAYGCFVSIQGFRKQGLVHVSHLTDT 89 
                  78*****************************974 PP

>> TIGR00202  csrA: carbon storage regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   2.6e-05     0.018       8      29 ..      94     115 ..      89     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.6e-05
    TIGR00202   8 vnEsivIgddievkvlsvkgdq 29 
                  vnE + +gdd+ vkv++v+ d+
  MMETSP1174-20130828|22558_1  94 VNECVSVGDDVFVKVIGVDVDS 115
                  9*****************9875 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.1e-05     0.028      78     118 ..      49      91 ..      46     113 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.1e-05
    TIGR00448  78 kPelqeiveGevieivefGafvslGpl..ddllhvsqvlddyv 118
                  +Pel  i +G v +i ++G fvs+  +   +l+hvs+++d  v
  MMETSP1174-20130828|22558_1  49 IPELFSIHKGAVAKIEAYGCFVSIQGFrkQGLVHVSHLTDTRV 91 
                  599999*****************98774468*******99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|22560_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|22563_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1174-20130828|22564_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|22566_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 269.72
//
Query:       MMETSP1174-20130828|22568_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 453.71
//
Query:       MMETSP1174-20130828|22569_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1000.18
//
Query:       MMETSP1174-20130828|22574_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   21.7   0.0    0.00013   18.3   0.0    1.9  2  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.1e-08   0.00013     415     454 ..       3      42 ..       1      46 [. 0.93
   2 !    1.5   0.0    0.0035        14     468     483 ..      84      99 ..      74     101 .] 0.77

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.1e-08
    TIGR01069 415 TDpdegsaLaislLeklakqnalvlitTHykelkalkyes 454
                  TD+++g a+a + +e+l ++ a v+++TH ++lk l+  +
  MMETSP1174-20130828|22574_1   3 TDAEQGGAIAGATIEELVRRGAVVVASTHNSALKRLALRR 42 
                  9*********************************998776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.0035
    TIGR01069 468 tlsPtYklligvpGrS 483
                    +P Yk+ +gv G+S
  MMETSP1174-20130828|22574_1  84 DGKPSYKIQYGVSGQS 99 
                  458***********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 380.88
//
Query:       MMETSP1174-20130828|22571_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.028   12.1   0.0    1.4  1  TIGR00030 S21p: ribosomal protein S21


Domain annotation for each model (and alignments):
>> TIGR00030  S21p: ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-06     0.028      27      46 ..      66      85 ..      61      90 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.9e-06
    TIGR00030 27 ilrelkkreyYekPserrrr 46
                 +++++k++eyYe+P e r +
  MMETSP1174-20130828|22571_1 66 TFTSIKAHEYYEQPLELRAK 85
                 7899***********99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.49
# Mc/sec: 1236.39
//
Query:       MMETSP1174-20130828|22577_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 987.79
//
Query:       MMETSP1174-20130828|22578_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 590.28
//
Query:       MMETSP1174-20130828|22579_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.9   0.0      0.028   12.5   0.0    1.2  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.032   10.6   0.0      0.042   10.1   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.028      13      66 ..      31      84 ..      25     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
    TIGR02469 13 akLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf 66
                 ++L l  +d +lD G+  G +t+ +a +   g   ++e ++ +l + +e  r f
  MMETSP1174-20130828|22579_1 31 RELDLSSRDAFLDLGSSRGGLTLTVAATTDCGICSGVELSPTSLAVARESRRLF 84
                 57999*9************************9999****999998887766655 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.1e-05     0.042     266     346 ..      21     104 ..       4     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.1e-05
    TIGR04074 266 laeqRleavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekak..rrlkld.rlsekqrervellqssl 346
                  l+   + a+  +l  s+    lDlG+  g L  +++a +      gv++s ++L++a+  rrl ++ +l+++ ++r++++q+ l
  MMETSP1174-20130828|22579_1  21 LSPATAVAISRELDLSSRDAFLDLGSSRGGLTLTVAATTDCGICSGVELSPTSLAVAResRRLFYEnSLQPEDNSRLRFFQGDL 104
                  555566677788888888899*********************************998633688776257889999*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1098.34
//
Query:       MMETSP1174-20130828|22576_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.61
# Mc/sec: 1659.60
//
Query:       MMETSP1174-20130828|22582_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|22581_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 1205.01
//
Query:       MMETSP1174-20130828|22584_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 540.83
//
Query:       MMETSP1174-20130828|22588_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.44
# Mc/sec: 155.99
//
Query:       MMETSP1174-20130828|22587_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|22593_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1174-20130828|22595_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 534.73
//
Query:       MMETSP1174-20130828|22591_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-16   57.4   0.0    3.2e-16   57.2   0.0    1.1  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00017   18.6   0.0    0.00025   18.1   0.0    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.008   12.6   0.0     0.0099   12.3   0.0    1.1  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.3e-19   3.2e-16     148     307 ..      11     170 ..       2     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 2.3e-19
    TIGR02352 148 vdprellkaLvkaleklGveiieevevqeieargekvtavktssekvqadqvvlaaGawakellp.........lalrpvkgeilrlevpaekllnrpvravvyqrqvYivPredgrlvvGAtseesgfdttvtlegvkeLledaievlPalkeaelletwaGlRPatp 307
                  v+ +++l  L++++++ G+e i+      +++ ++    v+++        v +++G+++ + l+           l p++g+ l +++p    ++ + ++  ++ ++Yi Pr+d+ +++G t ++ + dtt+++e  + +l+ a + +P+l  a++l++ +G+RP+ +
  MMETSP1174-20130828|22591_1  11 VEGNMYLPHLLRKFKSHGGETIR----ARVQNTNDILDLVVGPP--SRLSAVLDCTGLDSAHSLGgvkngggvdRELNPIRGQTLHVHAP--YIKHAVQDYSDPSFPTYIYPRQDH-VLIGGTFHPGNSDTTPSEEHTQLILNGAAKFFPQLRSAPILRVAVGVRPGRS 170
                  66777888899999999*99999....66677777666777777..47788***********9999*****999889************9..555666667778889********9.*************************************************975 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-07   0.00025     213     303 ..      80     166 ..      74     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.8e-07
    TIGR03197 213 plrkvrGQvshlpateklsklktvl..caegYltpakqgehclGAsyerndedlelreadhaenlerlaellpalawaaevdisalqgrvgvR 303
                  +l+++rGQ  h+ a     +++     +  +Y+ p +++  ++G ++++ ++d++ +e+ ++  l+  a+++p+l+ a       l+  vgvR
  MMETSP1174-20130828|22591_1  80 ELNPIRGQTLHVHAPYIKHAVQDYSdpSFPTYIYPRQDH-VLIGGTFHPGNSDTTPSEEHTQLILNGAAKFFPQLRSAP-----ILRVAVGVR 166
                  5789*****9999876555554432227789**998766.899*******************************87753.....455555555 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.2e-06    0.0099     211     306 ..      75     168 ..      56     185 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-06
    TIGR03377 211 adlkielvpakGvllvlnhRlnnkvinRlrkpsdaDilvPgdtisllGttsekvddiddleveqeevdelldegakliPalaeaRilrafaGvRPL 306
                   +++ el p +G  l ++    ++ +     ps    + P +   l+G t +  +   d+++++e  + +l+  ak++P+l++a ilr   GvRP 
  MMETSP1174-20130828|22591_1  75 GGVDRELNPIRGQTLHVHAPYIKHAVQDYSDPSFPTYIYPRQDHVLIGGTFHPGN--SDTTPSEEHTQLILNGAAKFFPQLRSAPILRVAVGVRPG 168
                  6788888999999999999999999999999999999999999999999987644..46677788889999999*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.52
# Mc/sec: 586.34
//
Query:       MMETSP1174-20130828|22594_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.55
# Mc/sec: 1845.45
//
Query:       MMETSP1174-20130828|22596_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   17.7  42.2    0.00016   17.4  29.3    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00071   15.2  36.2    0.00092   14.8  25.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        0.3    8.8  12.7        1.9    6.2   7.2    2.2  2  TIGR02669 SpoIID_LytB: SpoIID/LytB domain
        1.4    5.9  32.5        5.3    4.0  22.1    1.9  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        2.7    4.0  22.4        3.8    3.5  15.6    1.2  1  TIGR01069 mutS2: MutS2 family protein
        5.3    3.3  17.7        9.2    2.5  12.3    1.3  1  TIGR03545 TIGR03545: TIGR03545 family protein
        5.6    3.1  41.7        2.2    4.5  26.0    2.1  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  29.3   2.6e-07   0.00016     713     908 ..      73     264 ..       8     313 .. 0.41

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.6e-07
    TIGR02168 713 eeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaa.ekeerleslekeiaa..lekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrel 908
                  ++ + + ++e+ +++++l e++ el+  ++e +++++++++++ el e+++e +e+++e+ ++++el e+ee++++ ++++++ ++el+++ e+++ +++el++ +++ +  + e++e lek i++  l++ +++++ +  ++ ++  +++++++ +e+       +l +l ++ a l+++++++ ++  + ++++++ 
  MMETSP1174-20130828|22596_1  73 QQVAVENDQEIWDQREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELREYRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQLEEVRGQQDELRRARQREQgLQPEQQEALEKSIREglLTELVQDMRYEVGQEMADFLAVSERQQVMEA-------ALRHLMDQFAYLRANMDNMDTDNMDDMNDMDNN 264
                  222223333333334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444422222220122222222222221112222222222222222222222222222222.......222222222222222222222211111111111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  25.1   1.6e-06   0.00092     668     881 ..      78     296 ..      28     306 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-06
    TIGR02169 668 lvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkeale.dleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelq....eeieeleeqkkeiekeieelkakleeleeeleeleaavreL 881
                   + ++  ++ e+l e+  eL +++++l++++++++k+  el+++ ++ ++  +e++k++++l+e+eek  + +e+l+ek+sele++lee++ +++el+   ++ +    + +eale ++ + l  e ++ ++ e+ +  +    +++r + +ea+l +l  + ++l+ +++++     ++++++++++ ++ ++ie  +     + +   +++   ++L
  MMETSP1174-20130828|22596_1  78 ENDQEIWDQREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELREYRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQLEEVRGQQDELRRARQREQGLQPEQQEALEkSIREGLLTELVQDMRYEVGQEMADFLAVSERQQVMEAALRHLMDQFAYLRANMDNMDtdnmDDMNDMDNNNYKEDDTIEGGESTSTTTTTTTTNTNTTNNTL 296
                  333344455556666666666666666666666666666666666666666666667777777777777777777777777777777777777777765555555444444444441455556666666666666555555555556666666666655555555555554443111144455555555555555555555554444444444444444 PP

>> TIGR02669  SpoIID_LytB: SpoIID/LytB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.2    0.0032       1.9      91     214 ..      62     185 ..       9     206 .. 0.64
   2 ?    2.9   0.0     0.033        19     101     177 ..     226     300 ..     213     357 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0032
    TIGR02669  91 lieavyhsssggv..tesseevwgkdlpYLksvedadeeaakksaslklkseeelkkklgleegelkeskelkrsnskrlkkleirkskgsvklskievrkklglksskkktetrrklrellsllk 214
                    +avyh ++     +e+ +e+w +    L+ ++   +++++ +++++ +++e+ +   +++e + + ++  k++++ r ++ +++ ++++  +++ e++ +l++ +   ++++ r++r++ + l+
  MMETSP1174-20130828|22596_1  62 RSKAVYHPHHTQQvaVENDQEIWDQREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELREYRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQLEEVR--GQQDELRRARQREQGLQ 185
                  45799998877652268999*****9****98888776666555555555555555555555555666666667777777777777777777777777777777777..33445555555555333 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.033
    TIGR02669 101 ggvtesseevwgkdlpYLksvedadeeaakksaslklkseeelkkklgleegelkeskelkrsnskrlkkleirksk 177
                    v+e++     +++ YL++  d+ +  +++ ++   +++++ k+  ++e ge +++  +++++  ++++++++++ 
  MMETSP1174-20130828|22596_1 226 QQVMEAALRHLMDQFAYLRANMDNMDTDNMDDMND--MDNNNYKEDDTIEGGESTSTTTTTTTTNTNTTNNTLDQTT 300
                  55677777777889999999999886555444443..3334444444444444444444444444444444444444 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  22.1    0.0091       5.3      35     170 ..      60     202 ..      46     296 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0091
    TIGR03752  35 adkalaelspeelkalgiegdtp.edtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqses.......k 170
                   +++ a   p++++++ +e d+   d    l  + +elr+++++l+++ ++++ke+ +l++++++++e  +q+++++++el++++e++ ++q++l+e+ +el+++le+v  ++++ ++      Gl+++++++ e+       +
  MMETSP1174-20130828|22596_1  60 RQRSKAVYHPHHTQQVAVENDQEiWDQREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELRE-YRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQLEEVRGQQDELRRARQREQGLQPEQQEALEKsiregllT 202
                  45666777899999999**99973699999********************************999986.68899999******************************9999999999999999999999999887667443331 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  15.6    0.0064       3.8     509     612 ..      86     190 ..      71     273 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0064
    TIGR01069 509 ekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelek..eaqealkaakkeveeiirelkekkiekakekkatellkklkeek 612
                  ++ee+ +   +l ++++el+e+ +e+ k  +el  +++el + ++e+++++++l+++ ek   aqe+l++ ++e+e+ ++e++ ++ e +++ +  + l+  + ++
  MMETSP1174-20130828|22596_1  86 QREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELREYRQEMRKQRQELREQEEKmvAAQEQLREKQSELEDQLEEVRGQQDELRRARQREQGLQPEQ-QE 190
                  3444444444455555555555555555555555555555555555555555554444442234566666666666666666666555555555444332222.22 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  12.3     0.016       9.2     172     259 ..      76     163 ..      70     168 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.016
    TIGR03545 172 slkakqakwkkrkksLpnkqdleeykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkka 259
                  ++++ q++w++r + L+++ +l   ++ l + +++  k+  el ++ +el + ++e+ +++q +++ ++++ ++ +ql ++  el+ +
  MMETSP1174-20130828|22596_1  76 AVENDQEIWDQREELLEQQRELRDQQQELREHRQEMRKEQIELREQQQELREYRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQ 163
                  57899****************************************************************************9999987 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  10.4     0.021        12      49     131 ..      47     129 ..      17     131 .. 0.59
   2 ?    4.5  26.0    0.0037       2.2      28     177 ..      81     228 ..      64     241 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.021
    TIGR03319  49 kkealleakeevkklreelekelkerrkelqklekrl.kqkeekldrkkeklekkeeelekkekeleekekeleekeeeleell 131
                  + +  +  ++ev ++r+++  + ++ ++   ++++ + +q+ee l++ +++l+++++el+++++e+++++ el+e+++el+e  
  MMETSP1174-20130828|22596_1  47 NSSSRMGWRTEVDRQRSKAVYHPHHTQQVAVENDQEIwDQREELLEQ-QRELRDQQQELREHRQEMRKEQIELREQQQELREYR 129
                  45555556666666666665555555444444444441444444444.447777777777777777777777777777776654 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0037
    TIGR03319  28 eeaeeeakkiieeak..keaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaaklikeieeeak 177
                  +e+ ++ ++++e+ +  ++ +++ +e   e+++e+ +lre +++el+e r+e++k+ + l+++eek+   +e+l++k++ele + +e++ ++ el++ +++ + l+ eq+e Lek     +e   + l+++++ e+ +e+a  +   e++  
  MMETSP1174-20130828|22596_1  81 QEIWDQREELLEQQRelRDQQQELREHRQEMRKEQIELRE-QQQELREYRQEMRKQRQELREQEEKMVAAQEQLREKQSELEDQLEEVRGQQDELRRARQREQGLQPEQQEALEKSI---REGLLTELVQDMRYEVGQEMADFLAVSERQQV 228
                  3333444444444332466777777777788888777775.57899999*******************9999****************************999**********9964...45566678888888888888888777666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       609  (0.148464); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.20s 00:00:01.01 Elapsed: 00:00:00.59
# Mc/sec: 1040.25
//
Query:       MMETSP1174-20130828|22601_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1438.68
//
Query:       MMETSP1174-20130828|22606_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1174-20130828|22605_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1095.15
//
Query:       MMETSP1174-20130828|22609_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.6   0.0       0.04   11.9   0.0    1.3  1  TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class


Domain annotation for each model (and alignments):
>> TIGR03748  conj_PilL: integrating conjugative element protein PilL, PFGI-1 class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.8e-06      0.04      14      55 ..      27      68 ..      22      79 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.8e-06
    TIGR03748 14 eaaqrdlLkqvvdvtipeelvatvgdaleyllkrsGysLcda 55
                 e+aq+dl +q+ +v++ +e+ ++v+dale + + + ++L ++
  MMETSP1174-20130828|22609_1 27 EDAQKDLEDQLKQVQMDKEHLNKVKDALEETHHLTILELEEE 68
                 789*************************99877776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       358  (0.0872745); expected 82.0 (0.02)
Passed bias filter:                      292  (0.0711848); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 651.43
//
Query:       MMETSP1174-20130828|22608_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1174-20130828|22613_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   22.1   0.0    3.9e-05   21.3   0.0    1.4  1  TIGR01385 TFSII: transcription elongation factor S-II


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   9.4e-09   3.9e-05      22      79 ..      69     152 ..      47     204 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 9.4e-09
    TIGR01385  22 qvidilkqLkklpvteellketkvGlkvnklrkkpne.......dikklakeliksWKkvvike...................e 79 
                   v + l++L+ l v+ +++++t++ + v++l +++         ++k+l+k li+ WK+   k                    +
  MMETSP1174-20130828|22613_1  69 VVRECLRRLDVLDVSKDTIHQTRISVDVRALTRQSSTmglatdpEVKRLSKGLIRRWKRLFGKTaplaataggvcsvgtalpmR 152
                  57799**************************99864222333225*************99888666666666666666655541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 906.33
//
Query:       MMETSP1174-20130828|22611_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 2058.21
//
Query:       MMETSP1174-20130828|22615_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-06   23.7   0.1    1.3e-05   22.7   0.1    1.4  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   3.1e-09   1.3e-05      89     129 ..       6      44 ..       2      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.1e-09
    TIGR01840  89 nysIDpnrvyvtGLSaGggetaVllatypdvfAgaAsnagl 129
                  + +IDp+r y tG S Gg+    ++    d fA++A++ g 
  MMETSP1174-20130828|22615_1   6 TMNIDPRRLYCTGVSMGGYGAWEAGT--TDLFAAIAPVCGA 44 
                  789****************9876665..5********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 650.52
//
Query:       MMETSP1174-20130828|22617_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-12   43.7   0.0      6e-09   33.4   0.0    2.1  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.5e-12     6e-09       1      35 []       6      40 ..       6      40 .. 0.97
   2 !    8.6   0.0   0.00012      0.48       1      13 [.      41      53 ..      41      55 .. 0.92

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.5e-12
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 vt++tli+++++ag+++ A++ ++ M+ rg+ P++
  MMETSP1174-20130828|22617_1  6 VTFSTLIDACGRAGQLSRAFKTLRAMEQRGLTPNV 40
                 79*******************************96 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00012
    TIGR00756  1 vtyntlisglcka 13
                 vt+++li+++ k+
  MMETSP1174-20130828|22617_1 41 VTWTSLIDACIKQ 53
                 7*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1174-20130828|22622_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1174-20130828|22621_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1070.05
//
Query:       MMETSP1174-20130828|22625_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|22626_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 277.52
//
Query:       MMETSP1174-20130828|22619_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-71  237.8   0.0    2.5e-71  237.6   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.6e-25   87.7   0.0    2.1e-25   87.3   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.5e-08   32.5   0.0    2.9e-08   31.6   0.0    1.4  2  TIGR03690 20S_bact_beta: proteasome, beta subunit
     0.0021   14.7   0.0     0.0025   14.5   0.0    1.1  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
     0.0046   14.3   0.1      0.014   12.6   0.1    1.8  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   3.1e-74   2.5e-71       3     229 ..       5     236 ..       3     237 .. 0.93

  Alignments for each domain:
  == domain 1    score: 237.6 bits;  conditional E-value: 3.1e-74
    TIGR03633   3 YDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklle.aesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale.eelkaeevevavveveekkf..rklskeevekll 229
                  YD + t fsP+Grl+qveYa ea+  + tavGi +++g+vl+++k++ s+ll  ++s ek++k+Ddhv+++ aGl aDa +li+ ar ++q++ +tY+e + ve+l+++v+++kq+ytq+GG rPfGva+l+aG d++ + +l+++dPsG++  +ka++iG+++++ + ll++eyk +ls++ea++la k l k+++ +  +a+++e + ++++++++  r ls +e++++l
  MMETSP1174-20130828|22619_1   5 YDSSTTTFSPEGRLHQVEYAIEAINNAGTAVGILAADGIVLAGEKQKPSSLLApPKSSEKMYKLDDHVVTVVAGLTADANILINNARLQSQRYLYTYQESMPVEQLVQRVCNYKQAYTQYGGLRPFGVAFLFAGWDEHhGYQLYMSDPSGNYSGWKATCIGQNNQAGKGLLKNEYKPELSVEEALKLAAKVLVKTMDaTVPSADRIEFCALTNKDDQLvqRILSFDETNTIL 236
                  9**********************************************999987369*******************************************************************************998689*******************************************************94556899****999988877522446777776665 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   2.5e-28   2.1e-25       2     183 ..      32     218 ..      31     220 .. 0.94

  Alignments for each domain:
  == domain 1    score: 87.3 bits;  conditional E-value: 2.5e-28
    TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkd 183
                   T+vGi + dg+vlA +k+     l   k+ +K++k+dd++   +aG+ +da+ l++  + + + y  + +++++v++l + + n  +++     + pf v +l++G de +g +ly  Dp+G++   k t  G   +   g+L +eY+++ls+eea kla+k +  +++  v s d i+ + +t++
  MMETSP1174-20130828|22619_1  32 GTAVGILAADGIVLAGEKQKPSSLLAPPKSSEKMYKLDDHVVTVVAGLTADANILINNARLQSQRYLYTYQESMPVEQLVQRVCNYKQAYtqygGLRPFGVAFLFAGWDEhHGYQLYMSDPSGNYSGWKATCIGQNNQAGKGLLKNEYKPELSVEEALKLAAKVLVKTMDATVPSADRIEFCALTNK 218
                  59**********************************************************************************9988772222457************9788******************************************************************99998865 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.5e-11   2.9e-08       4     176 ..      30     201 ..      27     208 .. 0.86
   2 ?   -3.7   0.0       2.1   1.7e+03     118     130 ..     223     235 ..     218     245 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 3.5e-11
    TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaa.alqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaad 176
                  ++ t v +  ++G++laG+++  +  l   +  ek++k d++ ++ +aG ++ a  l++  +++ + y      ++ +e  ++r+++  +       l+ + v  l++G+d++++  +++  d  +g++   + +++G      kg lk  yk++ls e+a+++a + l  + d
  MMETSP1174-20130828|22619_1  30 NAGTAVGILAADGIVLAGEKQKPSSLLAPPKSSEKMYKLDDHVVTVVAGLTADANILINNARLQSQRYLYTYQESMPVEQLVQRVCNYKQAYTQYgGLRPFGVAFLFAGWDEHHGY-QLYMSDP-SGNYSGWKATCIGQNNQAGKGLLKNEYKPELSVEEALKLAAKVLVKTMD 201
                  6778899999************99999999*******************99988888888889999999999999999999999999876655443699999*********86544.3444455.6678888999******************************999987666 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.1
    TIGR03690 118 kGrifsydvvggk 130
                    ri+s+d + + 
  MMETSP1174-20130828|22619_1 223 VQRILSFDETNTI 235
                  5699999988764 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     3e-06    0.0025     175     318 ..      69     220 ..      34     237 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3e-06
    TIGR01377 175 ellvtvktkkksyqakklvvtaGaWtskLlkklaielPlqplrinvcywrikeakeekvs...qefPaflvlglap.yiyg.lPsleypGLikvayhhGqqvDPderdrekg...adiedveeLkkfvkdrlpglkeepkatelCmytktPD 318
                  ++ v+  +++    a+ l+  a    ++ l + +  +P++ l + vc ++   +++ +      +f    + +  +  +y   Ps +y+G +  +  + +q+     + e     +  e ++   k + + +   ++  + +e C  t+  D
  MMETSP1174-20130828|22619_1  69 DDHVVTVVAGLTADANILINNARLQSQRYLYTYQESMPVEQLVQRVCNYKQAYTQYGGLRpfgVAFLFAGWDEHHGyQLYMsDPSGNYSGWKATCIGQNNQAGKGLLKNEYKpelSVEEALKLAAKVLVKTMDATVPSADRIEFCALTNKDD 220
                  44455556777788999999999999999**********************99999888733234433334455565577778************999999887755555441122233333334677777888888889999998888655 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.7e-05     0.014      16     208 ..      20     216 ..       8     236 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
    TIGR03691  16 raelarkGiargrsvvvlsyadGilfvaen..psasl......hkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanv..yaqtlGavfteqekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaaslevavld 208
                  + e+a   i  + ++v +  adGi++ +e   ps+ l      +k+ +l d++    +G   + + l +    +     y+y  +    + +  v  y q+         +P+ v +  a   +e++  qly     G     +    +G + +  +  lk++y++els+++al++a + l +    + +  +a+++e + l 
  MMETSP1174-20130828|22619_1  20 QVEYAIEAINNAGTAVGILAADGIVLAGEKqkPSSLLappkssEKMYKLDDHVVTVVAGLTADANILINNARLQSQRYLYTYQESMPVEQLVQRVcnYKQAYTQ--YGGLRPFGVAFLFAGW-DEHHGYQLYMSDPSGNYSGWK-ATCIGQNNQAGKGLLKNEYKPELSVEEALKLAAKVLVKTM--DATVPSADRIEFCALT 216
                  57999999999999999999999999998533444332222226777788999999999999888887777777777778887765555544444224554322..2367999999999876.456678899888888877654.56789999999999*********************99964..4444456667766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 801.59
//
Query:       MMETSP1174-20130828|22627_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   17.9   0.0    0.00024   17.9   0.0    1.0  1  TIGR03417 chol_sulfatase: choline-sulfatase
  ------ inclusion threshold ------
      0.036   11.3   0.0      0.043   11.1   0.0    1.1  1  TIGR01924 rsbW_low_gc: anti-sigma B factor


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-07   0.00024     238     291 ..      33      87 ..      11      95 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-07
    TIGR03417 238 lkekditeeqirrarrayfaaisy.vddkiGellevleetrladdtivvfvsdhG 291
                  ++++  + ++i +a r  faa++y +dd + +l ++l+e  + +dt  +++sd G
  MMETSP1174-20130828|22627_1  33 HDNQSRAYQKIPDAFRKVFAAMTYmIDDAVKNLTNSLKEHSMFEDTFYIIASDNG 87 
                  4566677899*************967***************************98 PP

>> TIGR01924  rsbW_low_gc: anti-sigma B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05     0.043      35      87 ..      38      88 ..      25      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
    TIGR01924 35 ytyddiedlkiavseavtnavkhaykeeenGeisiefeiyedklevivsdkGd 87
                  +y++i d+   v  a+t  ++ a k+  n     e++++ed + +i sd+G 
  MMETSP1174-20130828|22627_1 38 RAYQKIPDAFRKVFAAMTYMIDDAVKNLTNSL--KEHSMFEDTFYIIASDNGG 88
                 589**********************9996643..4799*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 336.92
//
Query:       MMETSP1174-20130828|22634_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1174-20130828|22632_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-17   59.5   0.0      1e-16   58.5   0.0    1.5  1  TIGR03317 ygfZ_signature: folate-binding protein YgfZ
    5.6e-15   52.9   0.0      7e-15   52.6   0.0    1.1  1  TIGR00528 gcvT: glycine cleavage system T protein
    4.1e-08   29.3   0.0    1.6e-07   27.3   0.0    1.7  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family


Domain annotation for each model (and alignments):
>> TIGR03317  ygfZ_signature: folate-binding protein YgfZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   7.4e-20     1e-16       2      65 ..     206     267 ..     205     269 .. 0.95

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 7.4e-20
    TIGR03317   2 awellrieagipeieaelseeflpqelnldalggvsfkKGCYvGQEvvaRmkyrgklkrrlvll 65 
                  +we lri++g p+  +el++++  +e++l     v+f+KGCY+GQE +a++  r+ l+ +l+ +
  MMETSP1174-20130828|22632_1 206 EWEKLRITQGRPAYARELTDDYTVLEAGLYH--TVHFNKGCYIGQESIAKVGLRNALRSQLWGV 267
                  7****************************66..9**************************9987 PP

>> TIGR00528  gcvT: glycine cleavage system T protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   5.2e-18     7e-15      25     333 ..       3     317 ..       1     329 [. 0.76

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 5.2e-18
    TIGR00528  25 lPvqykslieeh..eavrtkaG..lfDvshmgkvelsGskslkfLqrllanDvdaLtkGkaqysvllnaqGGvvDDlivykegednrfllvvnaataekDlewlkeh..l..eeevtldtlskeisllalqGPkaktiledlld.kaveg.lkefffvqeaelalkka.liartGytG..edGfeiavanekavelwkklveaygvkPiGLgarDtLrleagmaLyGqeldeeitPleaglgwvvkkerkksdfiGravlee.qkengtekklvGlemlekgiarnelkvlltng.ekevGivtsG.tlsPtLgkni...alayvdke 333
                  + v+y++ + e   ++v ++ G  lfD s ++ +e sG++  +fL++ ++nDv++ + G  + +++  + G   +Dl      +d r+ll+  a++  +    ++ +  +   ++v+ ++++++i+   l GP a++ l+d+ + ++++    ++++     +  +++  i+ +  tG    Gf i+ ++e+     +kl++   v        + Lr+  g + y +el+++ t leagl ++v+ +  k  +iG++ + +    n  +++l G+  +  g+  ++ ++ l ++  + +Givts   l  +Lg+n+   +layv++ 
  MMETSP1174-20130828|22632_1   3 MNVRYATTVSETipQWVHDDDGarLFDHS-ITVFEFSGKDRAQFLHSQVTNDVKNAPIGAFLEATMPTPMGR-CEDLCSIIVRDD-RILLL--ASCDTRAALMMRMDkyIfpLDDVHANDVTDSIAACVLVGPGAESSLNDAANeQTIPTsSSAVAHW---KIE-EDGdCITVARSTGlkLPGFTIIGPKETISLYSQKLLSSRKVLRGTPDEWEKLRITQGRPAYARELTDDYTVLEAGLYHTVHFN--KGCYIGQESIAKvGLRNALRSQLWGV--IFDGVVAEGAELTLEDTpTTAIGIVTSAlPLHDALGTNVgtlGLAYVKRS 317
                  78888888766444899988665599987.789**************************9999999999876.566666666677.45554..555555555544331132247899999*******************9987515666533344444...443.33335555555551167*********99999******9888877778899********************************9..9******9997626788889999997..5578888888888875425889****983467888888722257888765 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.2e-10   1.6e-07     659     966 ..      27     323 ..      20     335 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.2e-10
    TIGR01372 659 llDastLGkievvGpdAaeFlnrvYtnafskLkvGkaRYGlmlredGlvfDDGvtlrlaedrflvttttakaarvlehlEeylqtefpelkvtltsvtdqwatlavaGPkarkllaevvegldl..sneafpfmsikevklagvearlfRisFsGelayEvavpadygekvwealleagkefgivpyGtEalhvlRaEkGfiivgqdtdgtvtpaDlglewavskkkkdfvGkrsleredlvredRkqlvgllpkdreekleeGaqivadeaeatplksqGyvtssy.lspalgr...tiaLAlvkgGraRlGe 966
                  l+D s+    e  G+d a+Fl    tn  ++  +G      m    G   D    + + +dr l+ ++  + a+ + ++++y   +fp  +v+ + vtd +a   + GP a   l++ ++ + +  s  a+ +  i+e   +g    ++R       ++ +  p +  +   ++ll   k    +p   E    lR+ +G     +++    t  ++gl ++v  +k  ++G+ s+++ +l ++ R ql g++      +++eGa++  +    tp++ +G vts+  l +alg    t++LA vk+ + Rl +
  MMETSP1174-20130828|22632_1  27 LFDHSI-TVFEFSGKDRAQFLHSQVTNDVKNAPIGAFLEATMPTPMGRCEDLC-SIIVRDDRILLLASCDTRAALMMRMDKY---IFPLDDVHANDVTDSIAACVLVGPGAESSLNDAANEQTIptSSSAVAHWKIEE---DGDCITVARSTGLKLPGFTIIGPKETISLYSQKLLSSRKVLRGTPDEWEK---LRITQGRPAYARELTDDYTVLEAGLYHTVHFNKGCYIGQESIAKVGLRNALRSQLWGVIFDG---VVAEGAELTLE---DTPTTAIGIVTSALpLHDALGTnvgTLGLAYVKRSAVRLSK 323
                  566553.457899**********************************986655.5567899999999999999999999998...6*****************************99988755522566666666655...55566666654444557999999998888889999999888888877665...79999999999***9999****************************************9866...79****99764...57899*******9746788997223468******9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1637.49
//
Query:       MMETSP1174-20130828|22636_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   10.1   7.7      0.029    9.9   5.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.034    9.6   8.0      0.038    9.4   5.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.4   1.4e-05     0.029     279     352 ..      19      92 ..       6      95 .] 0.27

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.4e-05
    TIGR02168 279 leeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkee 352
                  l+++l+e +++ q+ +a++++l++ ++ l+ r++++ +e+++++++l+  e  k+++  e+++++e +++++++
  MMETSP1174-20130828|22636_1  19 LKTKLTEKKDKCQKSQANLNDLKKIVASLELRRRSVTQENSRIDHELRLCETYKQDKVMEFKTIDEAIQKANKQ 92 
                  22222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.6   1.8e-05     0.038     895     968 ..      19      93 ..       6      95 .] 0.43

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 1.8e-05
    TIGR02169 895 leaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeeeepeeelslekvkkelekveeel 968
                  l+ +l e ++k ++ +a++++ +k +++l+ ++  + +e+s +++e+   e ++ +++++ +++ + ++k ++++
  MMETSP1174-20130828|22636_1  19 LKTKLTEKKDKCQKSQANLNDLKKIVASLELRRRSVTQENSRIDHELrLCETYKQDKVMEFKTIDEAIQKANKQI 93 
                  334444444444444444444444444444444444444444444443333344444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|22629_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   17.5   0.0     0.0021   16.2   0.0    1.7  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
  ------ inclusion threshold ------
      0.023   12.1   0.0      0.034   11.5   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-06    0.0021      11      41 ..     151     181 ..     142     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
    TIGR01126  11 ldenkdvlvefyaP.WCGhCkklaPeyeklak 41 
                  +   k vlv fy P WC h k+l P+  k+ +
  MMETSP1174-20130828|22629_1 151 S-LVKRVLVLFYRPsWCPHTKDLIPVVRKANA 181
                  3.6789*******99**********9988644 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.6e-05     0.034     364     388 ..     154     179 ..     140     191 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
    TIGR01130 364 KdVLvefYAp.WCGHCkkLapiYeel 388
                  K VLv fY p WC H k L p+  ++
  MMETSP1174-20130828|22629_1 154 KRVLVLFYRPsWCPHTKDLIPVVRKA 179
                  67777777766777777777765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 2160.85
//
Query:       MMETSP1174-20130828|22638_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 411.81
//
Query:       MMETSP1174-20130828|22640_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|22637_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 832.55
//
Query:       MMETSP1174-20130828|22639_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 763.94
//
Query:       MMETSP1174-20130828|22644_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|22645_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 152.30
//
Query:       MMETSP1174-20130828|22648_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-85  285.8   2.0    1.3e-85  285.5   1.4    1.0  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    7.9e-57  190.8   3.0    9.1e-57  190.6   2.1    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
      1e-52  177.1   1.3    1.3e-52  176.8   0.9    1.0  1  TIGR02079 THD1: threonine dehydratase
      5e-46  154.9   5.2    6.3e-46  154.6   3.6    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    4.6e-12   43.7   0.3    7.1e-12   43.1   0.2    1.3  1  TIGR01136 cysKM: cysteine synthases
    2.5e-11   40.6   0.1    3.1e-11   40.3   0.1    1.1  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    9.8e-11   39.1   0.4    6.1e-10   36.5   0.1    2.4  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    8.7e-10   36.1   1.0    1.3e-09   35.6   0.7    1.3  1  TIGR01139 cysK: cysteine synthase A
    4.8e-09   33.3   0.3    6.1e-09   33.0   0.2    1.1  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    9.8e-08   29.7   0.1    1.7e-07   28.9   0.1    1.4  1  TIGR01138 cysM: cysteine synthase B
    4.8e-05   20.5   0.1    0.00049   17.2   0.0    2.1  2  TIGR00260 thrC: threonine synthase
     0.0038   14.4   0.1      0.037   11.1   0.0    2.0  2  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
  ------ inclusion threshold ------
       0.02   11.5   0.4      0.039   10.5   0.3    1.6  1  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase
      0.035   10.6   1.2       0.12    8.8   0.8    1.9  1  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.5   1.4   4.3e-88   1.3e-85      54     373 ..       2     324 ..       1     328 [. 0.98

  Alignments for each domain:
  == domain 1    score: 285.5 bits;  conditional E-value: 4.3e-88
    TIGR01127  54 asaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadfDeayklaeelaeeegrvfvhafdDefviaGqGtlgleiledlpdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavlee.kvd..vkgkkvavvvsGGnidlnllekiiekgLvksgrkvkietvlkDkPGaLkklleviaekranivkiehdrlskeialgaakvelelevkgkehleellktlrd 373
                  asaGnha   ++  k+ gi+  ++mP +ap++kv + +++Ga+v++hG+++ ea  laee  + +g+ +++ +dD++++aG Gt+glei++++pd d +i+P GG GL++G ++a+k+l+pe+ v+ ve  +  s++++lk+gk+++  + +tiaDG+av ++g+ +f +++e+ Dev +v+e+ ia a+l+L+e +k+v+eg Ga+g+aa+l    ++  v+gkkv+v v+GGnid++ l +ii +gL+ + r+v+  + + Dk G ++ l +++ +++a i +i h+r   + ++++ +v+  +e+ g+eh  +++++l +
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENIGEAKSLAEEDPRFKGMLYINGYDDKEIVAGAGTMGLEIANQMPDADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFPTLSTIADGLAVPQVGSNAFLVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAILPGgPMHkqVQGKKVIVPVCGGNIDTTTLGRIIDRGLAADERLVRFICQVDDKAGGVHGLSKILLDQGASIKDIYHERAWLKSSVSKVQVKCIIETGGPEHALKIKRELAK 324
                  9********************************************************************************************************************************************************************************************************************7532323599***********************************************************************************************99975 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   2.1   3.1e-59   9.1e-57      71     346 ..       2     277 ..       1     307 [. 0.95

  Alignments for each domain:
  == domain 1    score: 190.6 bits;  conditional E-value: 3.1e-59
    TIGR01124  71 asaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakalelaqekgltfiapfddplviaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalkqaleaGervkldqvGlfadGvavkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGalalaGlk.kyvakkgiedktlvailsGanlnfdrlryvseraelGeqreallavtipeekGsllkfvevl 346
                  asaGnha  +++ +kklG+   ++mp+ +p  kv  ++afG++vv+hGen  eak+ a e  + kg+ +i+ +dd+ ++aG Gt++le+ +q+  d d++ +p GG Gl+aG +  +k l+pe+ v++ve++++ ++++al+aG++v++ ++   adG av +vG+++f +++ey d++  v+ + +  a+  + e  + v+e  Ga++la +      +k++++k++++ ++G n++  +l  + +r    ++r   +   + ++ G +  + ++l
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENIGEAKSLAEEDPRFKGMLYINGYDDKEIVAGAGTMGLEIANQMP-DADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFPTLSTIADGLAVPQVGSNAFLVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAILpGGPMHKQVQGKKVIVPVCGGNIDTTTLGRIIDRGLAADERLVRFICQVDDKAGGVHGLSKIL 277
                  9********************************************************************************************9.899****************************************************************************************************************987515678899***************************9999999999999999988887776665 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.9   4.3e-55   1.3e-52      70     343 ..       2     273 ..       1     293 [. 0.95

  Alignments for each domain:
  == domain 1    score: 176.8 bits;  conditional E-value: 4.3e-55
    TIGR02079  70 asaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiieGqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsiaalee...lseeikgktvvcvvsGgnndierleeikersllyeGlkhyflvkfpqraGalref 343
                  asaGnha  ++y  +klg+   v mP+++P qkv k + fG    +v++ G+   ea++ a+++ + +g  +i+ +ddk+i++G gt+++ei +q++++  d++++p GG Gl +G +  lk+ +++  ++ veP+   s+ a+lkag++v +  +    dG av +vG+ +f ++++ +dev  v+e+ +  ++l l ++e +v+e  Ga+ +aa+     ++++++gk+v++ v Ggn d + l  i +r l  +     f+ ++  +aG ++ +
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGA---NVVIHGENIGEAKSLAEEDPRFKGMLYINGYDDKEIVAGAGTMGLEIANQMPDA--DYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFPTLSTIADGLAVPQVGSNAFLVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAILPggpMHKQVQGKKVIVPVCGGNIDTTTLGRIIDRGLAADERLVRFICQVDDKAGGVHGL 273
                  8****************************************7...689**************************************************6..*******************************************************************************************************************975222779******************************99999999***99999987654 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   3.6   2.2e-48   6.3e-46      73     316 ..       2     247 ..       1     248 [. 0.94

  Alignments for each domain:
  == domain 1    score: 154.6 bits;  conditional E-value: 2.2e-48
    TIGR02991  73 astGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaqeeverlvkerGlvmlppfdhadivaGqGtlglevveqvpdlalvlvplsGGGlasGvavavkalkpatrviGvsmerGaamkaslkaGrpvlveelptladslGGGiGldnrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaallaGk.ik..vkGpivvl.vsGrnidmdlhkriid 316
                  as+Gnh  al+y  kk g+++ + m ++ p +kv + r +Ga+v i G+   +a+   e   + +G+  +  +d+++ivaG Gt+gle+ +q+pd++ +++p  G Gl +G + a+k+l p++ v+ v      ++ a+lkaG+pv+   l t+ad l          +f +++e+ de+  + e+ ia ++      e+ +veG Ga+G+aa+l G  ++  v+G+ v++ v G nid     riid
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENIGEAKSLAEEDPRFKGMLYINGYDDKEIVAGAGTMGLEIANQMPDADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFPTLSTIADGLAVPQ--VGSNAFLVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAILPGGpMHkqVQGKKVIVpVCGGNIDTTTLGRIID 247
                  89**********************************************************************************************************************************************************997543..4455799********************************************984232348898776659*******99999987 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.2   2.4e-14   7.1e-12      63     257 ..       2     202 ..       1     236 [. 0.70

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 2.4e-14
    TIGR01136  63 atSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepe..kyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlseg....kpgph.kiqgigagf.iPki......ldeelldevikvededaietarrlakeegilv 257
                  a +GN  +aL + + + g  + ++mp  + + +    +a+Ga++v+  ++        +ak+laee+p    +++++ ++ ++   a   t g Ei +++  + d ++  +G +G + G++ +lk+ +p++ +vaveP++    + +    kp +   +  i +g  +P++        +e  dev++v+++       rl+++e ++v
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENI------GEAKSLAEEDPRfkGMLYINGYDDKE-IVAGAGTMGLEIANQMP-DADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAAlkagKPVHFpTLSTIADGLaVPQVgsnaflVAREYTDEVCNVNENLIALAVLRLVETEKMVV 202
                  678******************************************987654......45666666666310244566676654.45678899********9.67***********************************9876555432223332234666666643666522222234566677777777665555566666666554 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   1.1e-13   3.1e-11     119     327 ..       2     194 ..       1     224 [. 0.86

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 1.1e-13
    TIGR03528 119 atdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlnyddavrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeqlkelgvekpthvllqaGvGslagavlGylaskfgeerpiivivepdkadclyrsavaddGeihlvtGdlatimaGlacGepntigweilrdyasafvscedsvaa.kGmri 327
                  a+ Gnh   +++  +klg    v mP  +  +++ + r+ Ga+++i   n  +a  la+++ + kG   +     +Gy++  + i+ G +t+ le+ +q+   +      ++   G G lag+ l     +++  +p++v+v  + ++c+  +a+ + G+++     l+ti  Gla  +  + ++ + r+y+++   +++ + a   +r+
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENIGEAKSLAEEDPRFKGMLYI-----NGYDD--KEIVAGAGTMGLEIANQMPDADYI----IIPTGGAGLLAGTSL-----ALKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFP-TLSTIADGLAVPQVGSNAFLVAREYTDEVCNVNENLIAlAVLRL 194
                  678***************************************************************7766.....79*98..78****************955443....666778999999866.....4567789999999999**************98865.7**************************99988776554044454 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   2.1e-12   6.1e-10      64     270 ..       2     213 ..       1     238 [. 0.73
   2 ?   -2.6   0.0       1.7     5e+02      82     110 ..     257     287 ..     245     305 .. 0.60

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.1e-12
    TIGR03945  64 SsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelkevdylfvgvsttGtlaGvarrlrekspevkvvavDavGSvifgge...pgkRlipGlGa....svvpe......lldeslidevvkvseletvaacrelleregilaGgSsGtvvaav 270
                   s Gn a+aL+   ++lG+ + +++ + +  +++   ra+ga+v++  e  +    +++  + + e   + + ++++N Y +++ ++  + t++ ei++++++ dy++++++ +G laG + +l+  +pe+ vvav+ +  + f ++    ++ + p l +      vp+      l++++ +dev++v+e   + a  +l+e+e +++ g  +  +aa+
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGE--N----IGE-AKSLAEEDPRFKGMLYINGYDDKEIVA-GAGTMGLEIANQMPDADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAAAlkaGKPVHFPTLSTiadgLAVPQvgsnafLVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAI 213
                  599****************98777766677788999******9976333..2....222.24455556667889******9987665.558999*******************************************99999997641113345555544311111223211122267788888899999988888888888888888766665556665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
    TIGR03945  82 lkficvvDpkisean..lkllralgaevevv 110
                  ++fic vD k+  ++   k+l   ga+++ +
  MMETSP1174-20130828|22648_1 257 VRFICQVDDKAGGVHglSKILLDQGASIKDI 287
                  6788888877654431145555555555444 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.7   4.4e-12   1.3e-09      63     281 ..       2     229 ..       1     237 [. 0.69

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 4.4e-12
    TIGR01139  63 atsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnky..lllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaes....pvlsggkpgph.kiqGigagf.iPkv......LdkevidevikvsdeeaietarrlakeeGilvGissGaavaaal....kvakklekdkki 281
                  a +Gn  +al++ + + g  + ++mp    + +    +a+Ga++v+          i +a++l+ee+p     l ++ ++++    +   t + ei++++ +  d ++  +G  G ++G++ +lk+ +p++ vvaveP++     + l+ gkp +   +  i+ g  +P+v      + +e +dev +v+++       rl++ e ++v   +Ga   aa+     + k+ +  k+i
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGE------NIGEAKSLAEEDPRFKgmLYINGYDDK-EIVAGAGTMGLEIANQMPD-ADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCmsfaAALKAGKPVHFpTLSTIADGLaVPQVgsnaflVAREYTDEVCNVNENLIALAVLRLVETEKMVVE-GGGAIGLAAIlpggPMHKQVQGKKVI 229
                  678*****************************************99654......477999999999943310223444433.334567899********87.59*********************************996111144555555554245566666446775333333456778888888766544444566666655442.23444444431111455555444444 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2   2.1e-11   6.1e-09     100     309 ..       2     195 ..       1     224 [. 0.84

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.1e-11
    TIGR01747 100 atdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveqlrelgselpthvllqaGvGslaGavlGylveafsenipniivveadkadclyqsavkddGeirlvdGdlatimaGlacGepniisfeilrnntslfisaddsvaakG.mrvl 309
                  a+ Gnh   +++  +klG    v+mp  +  +++ + +  Ga+v+i+  n  +a  la++  + kg   +     +Gy++    i+ G +t+ +e  +q+ + +      ++   G G laG+ l      ++  +p+++vv  + ++c+  +a  + G+++     l+ti  Gla  +    +f + r+ t     +++ + a+  +r++
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENIGEAKSLAEEDPRFKGMLYI-----NGYDDK--EIVAGAGTMGLEIANQMPDAD----YIIIPTGGAGLLAGTSLA-----LKTLTPEMVVVAVEPTNCMSFAAALKAGKPVHFP-TLSTIADGLAVPQVGSNAFLVAREYTDEVCNVNENLIALAvLRLV 195
                  678********************************************************99999997765.....799974..699**************9998....34555678999***9984.....6778899************999999999998875.6***********999999999999999988887766554414443 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   5.7e-10   1.7e-07      65     203 ..       2     136 ..       1     156 [. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.7e-10
    TIGR01138  65 atsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeeklldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsa 203
                  a++Gn  +al+  +  +G++v ++mp     ++    +a+Ga++++    e +  a+ la+e  r     +++ +++  +  a   + G ei +q      + +   G +G + G+s  lk  +p++ +v ++p++ ++
  MMETSP1174-20130828|22648_1   2 ASAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHG--ENIGEAKSLAEEDPRFKGMLYINGYDDK-EIVAGAGTMGLEIANQMPD-ADYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMS 136
                  789****************************************98765..5566799999997665555599999875.5778899*********875.57888899***************************99876 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06   0.00049      79     307 ..       2     213 ..       1     216 [. 0.75
   2 ?    0.9   0.0      0.15        43     181     200 ..     224     243 ..     219     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.7e-06
    TIGR00260  79 AtsGdtgaaaaealagka.nvkvvvLyPkgkispvkeklvtalaenakvlaikG.dFDdaqdlvkeifedke.klklnsvNsinparieaqk.tyafeiveqlgkespdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaal 307
                  A+ G+ + a+   + gk+ ++ v v++P+  ++p+ +k+    a +a+v+ i+G +  +a    k+++e+++   ++  +N      i a   t+  ei++q++  + d +++p + +g++     +   +k+l  ++   a++++++  ++ +  k g+ ++  +++T++  +++  p     a  +ar++  ++ ++    +++ i  a+ +l+e+e++++e  +a+++aa+
  MMETSP1174-20130828|22648_1   2 ASAGNHALALS--YHGKKlGIPVSVIMPT--VAPI-QKVGKCRAFGANVV-IHGeNIGEA----KSLAEEDPrFKGMLYINGYDDKEIVAGAgTMGLEIANQMP--DADYIIIPTGgAGLLAGTSLA---LKTLTPEMVVVAVEPTNCMSFAAAL-KAGKPVHFPTLSTIADGLAV--PQVGSNAFLVAREYTDEVCNV----NENLIALAVLRLVETEKMVVEGGGAIGLAAI 213
                  67777766655..5554448888888887..4776.47777777777777.455144444....44555333256677788777777777777***********..99******9988887766555...7788555677888999997776666.77768888888999999998..56677788899**99999999....8888999*********************997 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.15
    TIGR00260 181 spdkvvvpvpsgnfgailkG 200
                  + +kv+vpv +gn+   + G
  MMETSP1174-20130828|22648_1 224 QGKKVIVPVCGGNIDTTTLG 243
                  5689**********987766 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00013     0.037     165     216 ..      88     132 ..      81     143 .. 0.81
   2 ?    0.2   0.0      0.28        82      79     159 ..     163     243 ..     153     247 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00013
    TIGR01275 165 leiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsaLkeevesvgvavsrf 216
                  leia+q    +  + d i++ +G +G +aG sl l++L++e+  v  av+ +
  MMETSP1174-20130828|22648_1  88 LEIANQ---MP--DADYIIIPTGGAGLLAGTSLALKTLTPEMVVV--AVEPT 132
                  678888...33..5799***********************99855..55554 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.28
    TIGR01275  79 klgLkavllLrkskkvadedeelkGnlL...ldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvGGsnslGalG 159
                  ++g +a l+ r   + +de  +++ nl+   + +l+++e  vv+      + a+l     + + +Gkk+ v   GG     +lG
  MMETSP1174-20130828|22648_1 163 QVGSNAFLVAR---EYTDEVCNVNENLIalaVLRLVETEKMVVEGGGAIGLAAILPGGPMHKQVQGKKVIVPVCGGNIDTTTLG 243
                  45555556555...3344444455554322266777777777777777777888887777788888887665555554555555 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00013     0.039     159     338 ..       3     165 ..       1     241 [. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
    TIGR02035 159 stGnlGlsiGiisaalGfkvtvhmsadakkwkkdklrskGvtvveyesdyskaveeGrkeaeadpl...syfvddeksrdlflGyavaasrlkkqldkkgikvdkehplfvylpcGvGGgpGGvafGlkllfgddvhvffaepthspcmllGlytGlhekisvqdiGidnltaadGlavgrps 338
                  s+Gn  l++   + +lG  v+v m + a   k  k r+ G +vv + ++      e +  ae+dp      +++  + +++  G    +  +       + ++d++   ++ +p G  G   G +  lk l  + v v+ +ept +      l++G+  +           t adGlav +  
  MMETSP1174-20130828|22648_1   3 SAGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGENI----GEAKSLAEEDPRfkgMLYINGYDDKEIVAGAGTMGLEIA------NQMPDAD---YIIIPTGGAGLLAGTSLALKTLTPEMV-VVAVEPTNCMSFAAALKAGKPVHFP----T--LSTIADGLAVPQVG 165
                  89******************************************876555....556777888886222345666666666666555444443......3344444...566899999999999999999988777.5679999866666666666543322....2..24677777776554 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.8   0.00041      0.12      70     280 ..       4     213 ..       2     241 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00041
    TIGR01137  70 sGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeip...gavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGsilaepeelnktektdy.kveGiGydf.iPtv......ldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaa 280
                  +Gn  + l+  +++ G  + +++P     +kv   +a+Ga++v    +         ig ak l +e p   g   ++ y++  + +a   t g ei +q+ +  d ++   G  G ++G++  lk+ ++++ +v ++P   +   +  l+  +  ++  +  i + + +P+v      + r+ +de+ +++++       rl++ e ++v G     ++a+
  MMETSP1174-20130828|22648_1   4 AGNHALALSYHGKKLGIPVSVIMPTVAPIQKVGKCRAFGANVVIHGEN---------IGEAKSLAEEDPrfkGMLYINGYDDK-EIVAGAGTMGLEIANQMPDA-DYIIIPTGGAGLLAGTSLALKTLTPEMVVVAVEPTNCMSFAA-ALKAGKPVHFpTLSTIADGLaVPQVgsnaflVAREYTDEVCNVNENLIALAVLRLVETEKMVVEGGGAIGLAAI 213
                  577777777777777888888888888888888888888888875443.........55566666655411144445555443.345667788999*9999875.88888899999***********************87653222.34333333331223333222234432222224566666666666666555566666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|22653_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 498.63
//
Query:       MMETSP1174-20130828|22647_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 713.82
//
Query:       MMETSP1174-20130828|22656_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 655.69
//
Query:       MMETSP1174-20130828|22657_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|22660_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.015   12.0   0.0    1.0  1  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC


Domain annotation for each model (and alignments):
>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-06     0.015     130     170 ..       2      42 ..       1      49 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-06
    TIGR02279 130 aglarPervaGlhffnPaPlmalvevvsGlateaevaetly 170
                  ag  rP+  +Glh  nPa +m   e vs l  ++e   t  
  MMETSP1174-20130828|22660_1   2 AGELRPKVAMGLHTKNPASQMSSPEDVSRLDRAREASRTAL 42 
                  55569999**********************99999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.40
# Mc/sec: 178.19
//
Query:       MMETSP1174-20130828|22665_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|22661_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1659.29
//
Query:       MMETSP1174-20130828|22666_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 569.02
//
Query:       MMETSP1174-20130828|22662_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-96  320.6  21.2    4.2e-96  320.3  14.7    1.0  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
    2.4e-34  116.6  16.6    3.2e-34  116.2  11.5    1.1  1  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.3  14.7     2e-99   4.2e-96      10     424 ..       5     426 ..       1     463 [. 0.88

  Alignments for each domain:
  == domain 1    score: 320.3 bits;  conditional E-value: 2e-99
    TIGR00840  10 livllillvslakisfhltqkvlrvvpEsvllivvGllvggiikaaer....kdpvtldsslfFlvLLPpivldaGyflpkreFfenlgsiLlfAvvGtlinAlvlglslYgillilgleeldiglldallfgslisAvDPvavLavFeevkvnekLyiliFGEsLlNDavtvvlyevlekfvkladeavtivdvvegivsffvvalggllvGvvvgflvalilkft..khirviepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvs..eneewnwafvvltlvfcviyRvlgvvtlsailnkfr...kvkleikdqlvifyaGlRGAvafaLallldekkveekklfvttvlvvvfltvilqGltikplvevLkvkkkeksk 424
                  l+  l+ll s++   +     +  +vpE+++ + vG+  ++i     +     + v + +++fF+ LLPpi+ ++Gy l+kr+Ff n+g i   AvvGt ++ +++g  lYg+ ++++l ++d  + + l fg+lisA+DPv+ LavF+e+kv+++L+ l+FGEs++NDav vvl++++ kfv+  + ++t+      ++ ffv+ +g++l+G  +g+  a++ k+t  + +r++e     ++ Y+  l+a  + +Sgi++ +++gi l++Y++ N+s+ ++   + +++ll+ +sEt +F+ +G+s+++  + +++  +++  + ++c + R++ v  l+a++nk r    +k++ + q +i +aGlRGAva+a a + ++   ++ + f+ t++++v+ltv+  G+ + p++++Lk+ ++ +++
  MMETSP1174-20130828|22662_1   5 LFFSLLLLLSIVAGHYVTHVFRCTLVPEAAVFLTVGMAASAITTLCGKgeitSALVEFSPTVFFIALLPPIIFNSGYTLEKRHFFSNFGAIAALAVVGTSLSTILVGSGLYGLSKLGLLYPTDFEFSECLAFGALISATDPVSTLAVFAELKVDPNLFYLVFGESVINDAVGVVLFNTFTKFVGFPFTPATAGLA---VADFFVIFIGSTLIGFTIGLFFAFVFKHTdfHGQRTMELAAYSILVYVPSLVASAMEMSGIVSTLFAGIYLRHYAHGNLSQDTQSQTQRLFHLLAYISETTVFLNIGLSVFAlqYRKHYRSLLIFWATLLCLLSRAVHVYPLTALSNKLRravDEKITKNKQHMIWFAGLRGAVAIACAKVFPDANGHRSD-FLVTTMIIVLLTVFTMGTLTTPMLDYLKISTGVNEE 426
                  4555566666665444444457899************9988887666666545667899*****************************************************************************************************************************77777777654...566*************************933455688988899999***************************************************************986225677777****************************9988899****************************6666655.5556678889*******************9986644 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2  11.5   1.6e-37   3.2e-34      42     409 ..      58     419 ..       8     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.6e-37
    TIGR00831  42 leveldrevvlllFlPplLfaeamntdlrelrenlreivllalalvvvtvvavgfllrw..vlGi......plaaalvlgavlsptDavavaglvkeirlPkkllivleGesllnDgaalvvlavava.valGkavfdpaaavveFvvvavGGilaGlvvgyLvtrllrakiD...epleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvqlpgiiesalkeaevapaaeilalavtavviyaalayvrfltvlkktsnrvlkkktrevGtreklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavviLfsllvqgvsLpilvkrkev 409
                    ve+++ v+++  lPp++f+ ++  + r +  n++ i+ la+ +    ++ vg  l+    lG+      +    l++ga++s+tD+v+ ++++ e ++   l  ++ Ges++nD+ ++v+++   + v    +  + + av +F v+ +G  l+G+ +g     +  ++ D   +   e a   +l ++  l+a  +++sG+v  + ag+ l ++     +s  +  + + ++ +l ++  + vf+ +G+ +           +    a++l l+  av +y+  a+      l++ ++        ++   +++++ +aGlRGa+++a a  +p         + r  ++  +  ++L++++  g+    ++ + ++
  MMETSP1174-20130828|22662_1  58 ALVEFSPTVFFIALLPPIIFNSGYTLEKRHFFSNFGAIAALAVVGTSLSTILVGSGLYGlsKLGLlyptdfEFSECLAFGALISATDPVSTLAVFAELKVDPNLFYLVFGESVINDAVGVVLFNTFTKfVGFPFTPATAGLAVADFFVIFIGSTLIGFTIGLFFAFVF-KHTDfhgQRTMELAAYSILVYVPSLVASAMEMSGIVSTLFAGIYLRHYAHG-NLSQDTQSQTQRLFHLLAYISETTVFLNIGLSVFALQYRKHYRSLLIFWATLLCLLSRAVHVYPLTALSNK---LRRAVD-------EKITKNKQHMIWFAGLRGAVAIACAKVFPDAN------GHRSDFLVTTMIIVLLTVFTMGTLTTPMLDYLKI 419
                  359*********************************************9*99*988886445775443333778899**********************************************855440555445555566799*****************9998655.44443334556777777788****************************999.99*******************************9999999999999999***************9988877...788788.......4455578999**************99988644......4455555666677888888777766555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1917.51
//
Query:       MMETSP1174-20130828|22669_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1163.90
//
Query:       MMETSP1174-20130828|22668_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 3009.35
//
Query:       MMETSP1174-20130828|22670_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-06   23.4   0.0    1.1e-05   23.1   0.0    1.1  1  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
    5.5e-05   20.8   0.4    6.9e-05   20.5   0.2    1.1  1  TIGR00270 TIGR00270: TIGR00270 family protein
    0.00011   20.0   0.0    0.00017   19.3   0.0    1.3  1  TIGR03070 couple_hipB: transcriptional regulator, y4mF family


Domain annotation for each model (and alignments):
>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     8e-09   1.1e-05      45     108 ..      50     113 ..      40     124 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8e-09
    TIGR03830  45 eeakensaaiaefkrkvdglltgeeirriRkklglsqkeaaellgggknafsrYErgevrpska 108
                   +a +++a+ + + ++  ++  +++i + R   +++qk++a+ ++ ++n ++ YE+g++ p+ +
  MMETSP1174-20130828|22670_1  50 SNASRLEAETEVLSHDRVDKSLSKAIMQARLAKKMNQKALATAINEKPNIIQDYESGKAIPNPQ 113
                  556677777777776666666666**********************************988754 PP

>> TIGR00270  TIGR00270: TIGR00270 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   5.1e-08   6.9e-05      69     126 ..      70     127 ..      50     138 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.1e-08
    TIGR00270  69 dygdiireerekrglsreelakkikekasvikkiereelePeekvvkklekllkikll 126
                     + i ++r  + + +  la  i+ek  +i+ +e+ +  P+++++ kl++ l  kl 
  MMETSP1174-20130828|22670_1  70 SLSKAIMQARLAKKMNQKALATAINEKPNIIQDYESGKAIPNPQILVKLDRALGCKLP 127
                  566789999*9******************************************99985 PP

>> TIGR03070  couple_hipB: transcriptional regulator, y4mF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   0.00017       2      58 .]      70     126 ..      69     126 .. 0.96

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
    TIGR03070   2 elgalvrarRkelgLtQadLAelaGVglrfirelEkGkatvrLdkvlrvleaLGleL 58 
                   l++++ ++R + +++Q++LA ++    + i++ E Gka ++ + ++++ +aLG +L
  MMETSP1174-20130828|22670_1  70 SLSKAIMQARLAKKMNQKALATAINEKPNIIQDYESGKAIPNPQILVKLDRALGCKL 126
                  6999*************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 555.95
//
Query:       MMETSP1174-20130828|22675_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1174-20130828|22671_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1174-20130828|22677_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-06   23.9   0.1    0.00042   17.5   0.0    2.2  2  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-07   0.00042      70     116 ..     111     157 ..      90     165 .. 0.87
   2 !    4.0   0.0    0.0013       5.5     141     219 ..     214     296 ..     204     332 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-07
    TIGR00569  70 lkptlPkevvgtAilyFkRFyLnnsvme..ydPkiivltcvFlAcKvee 116
                  lk  lP+ v++tA   F+R y   s  +  +d   + + c+FlA+K+ee
  MMETSP1174-20130828|22677_1 111 LK--LPQVVMATAQNLFHRVYWRKSLQDkrFDAFTVAMSCIFLASKIEE 157
                  55..*********************987446888999**********98 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0013
    TIGR00569 141 eyEllliqsLkfsL..lvhnPyrPleGFllDiktvlpklene...evlrkiadkflnevlltDvvllytPsqiaLaailseasr 219
                  e E +++++L f    ++ +P++ +  ++++  ++  +++ e   + l ++a  +ln+ +  D +  y    ia aai+++  +
  MMETSP1174-20130828|22677_1 214 EMERHVLKELGFGFyqVMEHPHKFIL-YYIEYLNKAGMKAPEqavKNLAQHAWGYLNDSMRIDLCVRYETKNIACAAIMIASLQ 296
                  55666666665443114566776554.555555555454444001456677779************************997543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1513.48
//
Query:       MMETSP1174-20130828|22676_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 471.39
//
Query:       MMETSP1174-20130828|22680_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|22681_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|22684_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|22685_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 174.89
//
Query:       MMETSP1174-20130828|22690_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.46
# Mc/sec: 619.77
//
Query:       MMETSP1174-20130828|22691_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 332.25
//
Query:       MMETSP1174-20130828|22686_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1804.95
//
Query:       MMETSP1174-20130828|22695_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|22693_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 1880.84
//
Query:       MMETSP1174-20130828|22694_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 2093.49
//
Query:       MMETSP1174-20130828|22696_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1174-20130828|22701_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 744.42
//
Query:       MMETSP1174-20130828|22699_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|22702_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1241.33
//
Query:       MMETSP1174-20130828|22698_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   17.2   0.0    0.00047   16.7   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-07   0.00047     285     366 ..     124     202 ..      96     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-07
    TIGR01982 285 GNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgkplke 366
                  GNi v++ + i  +   i+g+l +e  r l + ++gfl   y+++a+  l a  v s+ ++a +++a r+++e++ ++p++ 
  MMETSP1174-20130828|22698_1 124 GNI-VNSLPVIGPIRQQIMGSLRKELDRTLGRQVKGFLG-SYSKLATEQL-ATLVLSEANAAGFRTATRKIVEQVLERPVNS 202
                  555.5566677777778********************97.5888887776.6789999*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1163.15
//
Query:       MMETSP1174-20130828|22704_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|22705_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 754.22
//
Query:       MMETSP1174-20130828|22706_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|22710_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   32.8   0.0    1.5e-08   32.7   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   3.7e-12   1.5e-08     156     216 ..      75     135 ..      51     138 .] 0.93

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3.7e-12
    TIGR02933 156 reafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLl 216
                  + +f   a++ s+C +a  gG LG    G +  +  +  f+l+ geLs + +s+ G h++l
  MMETSP1174-20130828|22710_1  75 TRRFFAIAKKESDCSSAQRGGDLGPFEHGRMQRQFSDVSFSLDVGELSGICDSDSGIHIIL 135
                  5689999***************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.93
# Mc/sec: 195.85
//
Query:       MMETSP1174-20130828|22714_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    5.4   8.3          4    4.9   5.8    1.2  1  TIGR00267 TIGR00267: TIGR00267 family protein
        6.2    5.0  24.5        1.1    7.4  11.8    2.2  2  TIGR03602 streptolysinS: bacteriocin protoxin, streptolysin S family


Domain annotation for each model (and alignments):
>> TIGR00267  TIGR00267: TIGR00267 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.8    0.0019         4       8      52 ..       9      59 ..       4      70 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0019
    TIGR00267  8 idGalsalGvvlgasgsaddsviiaaGlgGGvang......lsnvlGalia 52
                  +Gal ++Gv++ a+g+a +    aa  gGG a +       +n++Gal  
  MMETSP1174-20130828|22714_1  9 CEGALGMVGVAVNAGGGAANAGGGAASAGGGAASAggeaanAANAVGALAF 59
                 689**********99999998776666666665431111116777777765 PP

>> TIGR03602  streptolysinS: bacteriocin protoxin, streptolysin S family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.8   0.00055       1.1      26      56 .]       7      39 ..       2      39 .. 0.70
   2 ?    2.0   3.9     0.026        54      38      52 ..      35      49 ..      34      53 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00055
    TIGR03602 26 CCCCstt..CCvsvavGsGsastgGGaaayqgG 56
                 CCC  +     v+v  G+G a++gGGaa+  gG
  MMETSP1174-20130828|22714_1  7 CCCEGALgmVGVAVNAGGGAANAGGGAASAGGG 39
                 4554444114566677************99887 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.026
    TIGR03602 38 avGsGsastgGGaaa 52
                 + G+G as+gG aa 
  MMETSP1174-20130828|22714_1 35 SAGGGAASAGGEAAN 49
                 689999997777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 291.15
//
Query:       MMETSP1174-20130828|22715_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.94
# Mc/sec: 75.82
//
Query:       MMETSP1174-20130828|22716_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1174-20130828|22717_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1174-20130828|22722_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|22721_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.2   0.0      0.052   10.8   0.0    1.2  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.3e-05     0.052     110     143 ..      22      55 ..       5      65 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.3e-05
    TIGR03848 110 aavfPgGealaevqaravaavreldarleeehgp 143
                   a+ PgGe+l  ++a+a   v+e+++r+++   p
  MMETSP1174-20130828|22721_1  22 IAALPGGESLLPTDAQAARKVEEWRRRINDLLLP 55 
                  4789***********************9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 502.99
//
Query:       MMETSP1174-20130828|22723_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.9   0.2       0.69    7.2   0.1    2.0  2  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO


Domain annotation for each model (and alignments):
>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0015         6      27      73 ..      25      72 ..      14      93 .. 0.76
   2 ?    7.2   0.1   0.00017      0.69     113     153 ..      93     134 ..      84     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0015
    TIGR03302 27 kteeesaeelYeeaeeelekgn.ykeAikkfeelesrypfseyaeqaq 73
                 + +++ +++l++++ ++l +g+ + +A ++++   s  p     ++a 
  MMETSP1174-20130828|22723_1 25 ERSQRHPKALFRRGVARLRQGQhFGKALRDLKLAASLAPKDAAVRKAL 72
                 567888999999999999887757899999988888888777777665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00017
    TIGR03302 113 iglsnykq.idrvdrDqkaakeAleafeelirryPnSeYaad 153
                   g+ + k+ i++v  Dq + ++Al+++  + r+ PnS   ++
  MMETSP1174-20130828|22723_1  93 NGMEHLKNkIEDVPNDQFNFQTALNDIDAMARQLPNSYLSQK 134
                  5666776679***************************87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|22726_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 367.97
//
Query:       MMETSP1174-20130828|22728_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|22731_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 641.74
//
Query:       MMETSP1174-20130828|22732_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.43
# Mc/sec: 205.66
//
Query:       MMETSP1174-20130828|22736_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 562.18
//
Query:       MMETSP1174-20130828|22738_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1145.48
//
Query:       MMETSP1174-20130828|22741_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 212.13
//
Query:       MMETSP1174-20130828|22742_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 896.75
//
Query:       MMETSP1174-20130828|22740_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.4   0.0    1.7e-05   22.0   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.1e-09   1.7e-05      22     105 ..       1      81 [.       1     100 [. 0.73

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.1e-09
    TIGR00601  22 tvkelKekiesekgkdayevaqqkLiyaGkiLs.DdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpas 105
                  t++elK+ +e+e g     +  q+Liy+Gk+Ls Dd t++ yki ++  + +    +   +     P+ + + a+t  + ++p +
  MMETSP1174-20130828|22740_1   1 TILELKRLVEEECG---AAIHLQRLIYSGKLLSnDDATLTSYKITDRTTIHLARRPENVIQEFLHIPPDEENDATTQEQ-NPPFA 81 
                  799***********...88999**********75899*********988766555555556555555555555555554.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 672.64
//
Query:       MMETSP1174-20130828|22745_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 343.97
//
Query:       MMETSP1174-20130828|22744_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   52.3   0.1    7.6e-13   46.3   0.1    2.1  2  TIGR02152 D_ribokin_bact: ribokinase
    2.8e-11   40.7   0.4    3.9e-11   40.2   0.3    1.1  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    6.8e-10   36.3   0.3    9.3e-10   35.8   0.2    1.1  1  TIGR03828 pfkB: 1-phosphofructokinase
     0.0054   13.7   0.1     0.0078   13.2   0.1    1.2  1  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0048       4.9     172     213 ..      39      79 ..      34     118 .. 0.75
   2 !   46.3   0.1   7.4e-16   7.6e-13     198     263 ..     128     196 ..     119     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0048
    TIGR02152 172 llslvdiivpNetEaeiLtgievedledaekaaekllekgvk 213
                  +l lvdi+  Ne Ea  ++g e   l +a+++ ++ l+ gv+
  MMETSP1174-20130828|22744_1  39 VLPLVDIMFVNEDEARYISGREPV-LLSAQEQKDDGLSAGVE 79 
                  7889****************9854.44455555555555555 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 7.4e-16
    TIGR02152 198 edaekaaekllekgvkaviitlGskGallvskd.ekklip..alkvkavDttaAGDtFigalavaLaeg 263
                  ++ ++ a+++ e gv+ v+itlG +Gal++++  ++ +++  +++v++vDtt+AGD+F++++   + ++
  MMETSP1174-20130828|22744_1 128 HAWKAVAAWFIEAGVRMVVITLGPQGALVMTSPgREVTVQrvPHRVTVVDTTGAGDAFNAGFLDGFRRK 196
                  455778999********************9987566666522579****************98777665 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.3   3.8e-14   3.9e-11     201     265 ..     130     197 ..     118     211 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.8e-14
    TIGR03168 201 vieaarellekGvenvlvSlGadGallvtkeg...alkaeapkvevvstvGAGDsmvAgfllalekgl 265
                  ++ +a  ++e+Gv++v+++lG +Gal++t+ g   +++  + +v+vv+t+GAGD++ Agfl +++++ 
  MMETSP1174-20130828|22744_1 130 WKAVAAWFIEAGVRMVVITLGPQGALVMTSPGrevTVQRVPHRVTVVDTTGAGDAFNAGFLDGFRRKG 197
                  566778899*******************986654477888999******************9998875 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2     9e-13   9.3e-10     203     265 ..     132     197 ..     118     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 9e-13
    TIGR03828 203 eaarkllekgvenvlislGadGallvtke...galfakapkievkstvGAGDsmvAgfllalekgl 265
                   +a  ++e+gv+ v+i+lG +Gal++t+     +++  + +++v++t+GAGD+  Agfl ++++++
  MMETSP1174-20130828|22744_1 132 AVAAWFIEAGVRMVVITLGPQGALVMTSPgreVTVQRVPHRVTVVDTTGAGDAFNAGFLDGFRRKG 197
                  56777899*****************9975211456666799******************9998765 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   7.6e-06    0.0078     222     268 ..     137     185 ..     112     191 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.6e-06
    TIGR02198 222 leeleleallvTrsekGmtllekekevlhlpaaak..evyDVtGAGDtV 268
                    e+ ++++++T + +G  ++++ ++ + ++ + +   v+D tGAGD+ 
  MMETSP1174-20130828|22744_1 137 FIEAGVRMVVITLGPQGALVMTSPGREVTVQRVPHrvTVVDTTGAGDAF 185
                  4578899**********99988766666666555434899*******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 803.25
//
Query:       MMETSP1174-20130828|22753_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   18.4   0.0     0.0097   13.1   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
  ------ inclusion threshold ------
      0.011   12.9   0.0      0.073   10.2   0.0    1.9  2  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.7e-06    0.0097      49     113 ..       2      69 ..       1      75 [. 0.87
   2 !    3.3   0.0    0.0046       9.5     194     250 ..     168     223 ..     158     224 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.7e-06
    TIGR02427  49 GHGlSd..vpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaar.rpdrvealvlsnta 113
                  G G+Sd  + + +y+ e + + +la lD+l++ +++++    GGl++++     +p  +++lv++nt 
  MMETSP1174-20130828|22753_1   2 GFGKSDkfLSQDDYTHEFHRQTLLAFLDKLELTNVTLVVQDWGGLTGLSCVKDlQPGVISRLVIMNTG 69 
                  7899974467899**********************************986654389999******996 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0046
    TIGR02427 194 vPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                   P lv+  ++D+ t   + ++  +l+p+a+ +++++a+H  +  ++  +a+ +++f+
  MMETSP1174-20130828|22753_1 168 KPCLVMFSNKDPITKGGD-KDFMSLMPNAKQVTVDGAGHFLQETHGVFLAEEIVKFV 223
                  588888888998886655.567799**************998888888888888886 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.6e-05     0.073      49     113 ..       2      68 ..       1      73 [. 0.84
   2 ?    0.4   0.0     0.035        72     219     256 ..     187     224 ..     142     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.6e-05
    TIGR03611  49 Gtgrspeelae.dysiaalaadvlelldaldiekahvvGhalGgliglelalr.kperlaklvlina 113
                  G g+s + l++ dy+ +   + +l+ ld+l+++++ +v    Ggl gl    + +p  +++lv++n+
  MMETSP1174-20130828|22753_1   2 GFGKSDKFLSQdDYTHEFHRQTLLAFLDKLELTNVTLVVQDWGGLTGLSCVKDlQPGVISRLVIMNT 68 
                  677888877651677777778899************************9877548999******996 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.035
    TIGR03611 219 eLaekLPdaelklleyGghasnvtdpetfnellldfLa 256
                   +++ +P+a+ + ++  gh  + t+   + e +++f++
  MMETSP1174-20130828|22753_1 187 DFMSLMPNAKQVTVDGAGHFLQETHGVFLAEEIVKFVE 224
                  5667799********99**9999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1003.12
//
Query:       MMETSP1174-20130828|22748_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.61
# Mc/sec: 1105.68
//
Query:       MMETSP1174-20130828|22757_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-05   19.5   0.0    7.2e-05   19.4   0.0    1.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.7e-08   7.2e-05     188     256 ..       1      77 [.       1      82 [. 0.78

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.7e-08
    TIGR01982 188 efektlkeEldlrlEaanaselkenfk......ndkklivPevyweltservltlewidgipvsdlek..lkeaGld 256
                  ef+k+  +Eld+ +E +n + + +         ++++++ P+v+ + ++ +v+t+ ++ g ++++ +k  l+  G+d
  MMETSP1174-20130828|22757_1   1 EFSKQFLAELDYDRERRNLKTVYKSSLdpsapyQKHDIVLPQVFDDFCTGKVITMTYLPGPKLEEEAKrqLELLGID 77 
                  6889999***********9988776541212226789*************************999765225556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1174-20130828|22760_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 354.29
//
Query:       MMETSP1174-20130828|22756_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1226.72
//
Query:       MMETSP1174-20130828|22761_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1174-20130828|22755_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.55
# Mc/sec: 2047.03
//
Query:       MMETSP1174-20130828|22763_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   28.4   0.0    1.5e-07   28.2   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24
    0.00066   16.6   0.0    0.00075   16.4   0.0    1.1  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00079   16.6   0.0       0.02   12.0   0.0    2.1  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0026   15.2   0.0     0.0031   14.9   0.0    1.2  1  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0035   14.3   0.0     0.0042   14.0   0.0    1.1  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0083   12.5   0.0     0.0083   12.5   0.0    1.1  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
  ------ inclusion threshold ------
      0.011   13.6   0.1      0.018   12.9   0.0    1.4  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.017   12.6   0.0      0.021   12.3   0.0    1.2  1  TIGR01351 adk: adenylate kinases
      0.023   11.9   0.0      0.026   11.7   0.0    1.1  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.026   10.8   0.0      0.028   10.7   0.0    1.1  1  TIGR00763 lon: ATP-dependent protease La
      0.041   10.3   0.1      0.071    9.5   0.1    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB


Domain annotation for each model (and alignments):
>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.9e-10   1.5e-07      70     140 ..      14      97 ..       3     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.9e-10
    TIGR00602  70 enelWveKykPetqeelAvHKkKieeveewlka.qvLeskkkr............iLLitGPsGCgKsTvikiLsKelgikvqe 140
                   ++lWv+Ky P  +eel      ++++++wl   +    +k +              L++GP+G gKsT+   +++  g+ v e
  MMETSP1174-20130828|22763_1  14 TGQLWVDKYAPSSAEELLGNVDIVKKLKNWLLQwDQVHLHKTKtvgyskenpgakAALMSGPPGIGKSTAANLIARLAGYDVLE 97 
                  689**************999999999****96423333322323578888899999************************9987 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-06   0.00075      32      54 ..      69      91 ..      49     110 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2e-06
    TIGR00635 32 hvllyGPPGlGkttlakiiakel 54
                   l++GPPG+Gk t a++ia+  
  MMETSP1174-20130828|22763_1 69 AALMSGPPGIGKSTAANLIARLA 91
                 5799****************755 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.3e-05      0.02       7      58 ..      21      89 ..      16      95 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.3e-05
    TIGR02397  7 kyrPktFedliGqehvvktLknaikk......nki...........ahayLfsGprGvGKTsiArilAk 58
                 ky P++ e+l+G   +vk Lkn + +      +k            a+a L+sGp G+GK + A ++A+
  MMETSP1174-20130828|22763_1 21 KYAPSSAEELLGNVDIVKKLKNWLLQwdqvhlHKTktvgyskenpgAKAALMSGPPGIGKSTAANLIAR 89
                 67777777777777777777765432111111111112222222226799****************997 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.4e-06    0.0031       8      36 ..      61      89 ..      54     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.4e-06
    TIGR00678  8 lekgrlahAlLfaGpeGvGkealaealak 36
                  +++  a+A L++Gp+G+Gk+++a+ +a+
  MMETSP1174-20130828|22763_1 61 SKENPGAKAALMSGPPGIGKSTAANLIAR 89
                 5677899******************9997 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.1e-05    0.0042      12      66 ..      35      91 ..      25     101 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
    TIGR02881 12 eevkelikeiyalilinekrkee.g.lkaekqvlhmifkGnPGtGkttvarllaklf 66
                 + vk+l + +  + +++ +++++ g  k+++ +   ++ G PG Gk+t a l+a+l 
  MMETSP1174-20130828|22763_1 35 DIVKKLKNWLLQWDQVHLHKTKTvGySKENPGAKAALMSGPPGIGKSTAANLIARLA 91
                 445666667888888887766652425778889999******************984 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.2e-05    0.0083     312     343 ..      67      97 ..      31     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-05
    TIGR03922 312 skHlllaGPPGtGkttiArvvakiyaGlgvlr 343
                  +k  l+ GPPG Gk t A+ +a+ +aG  vl+
  MMETSP1174-20130828|22763_1  67 AKAALMSGPPGIGKSTAANLIAR-LAGYDVLE 97 
                  567899*************9997.68887775 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.4   1.7e+03      73      86 ..      32      45 ..      18      52 .. 0.60
   2 ?   12.9   0.0   4.8e-05     0.018       5      27 ..      72      94 ..      69     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4.4
    TIGR02173 73 knvvlesrlagWll 86
                 +nv +  +l  Wll
  MMETSP1174-20130828|22763_1 32 GNVDIVKKLKNWLL 45
                 44545556666665 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 4.8e-05
    TIGR02173  5 isGpPGsGkttvakilaeklslk 27
                 +sGpPG Gk+t a+ +a+  ++ 
  MMETSP1174-20130828|22763_1 72 MSGPPGIGKSTAANLIARLAGYD 94
                 7****************988886 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05     0.021       3      23 ..      71      91 ..      69     112 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.6e-05
    TIGR01351  3 vllGpPGsGKGTqakrlaekl 23
                 ++ GpPG GK+T a+ +a   
  MMETSP1174-20130828|22763_1 71 LMSGPPGIGKSTAANLIARLA 91
                 789*************99765 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05     0.026      65     142 ..      14      91 ..       8     114 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.1e-05
    TIGR03596  65 ktkkwlkyfeekgkkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkk 142
                  + + w++++  ++ + l+ n +  kk+k+ l + +++  +k+++      ++ a  al+ G P +GKSt  N +a+  
  MMETSP1174-20130828|22763_1  14 TGQLWVDKYAPSSAEELLGNVDIVKKLKNWLLQWDQVHLHKTKTVGYSKENPGAKAALMSGPPGIGKSTAANLIARLA 91 
                  557899999999999999999999999998888999888888886666666666778889*********777665543 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.6e-05     0.028     348     376 ..      62      90 ..      36      99 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 7.6e-05
    TIGR00763 348 rkklkgkilclvGPPGVGKtSlaksiAka 376
                  +++  +k   ++GPPG+GK+  a+ iA+ 
  MMETSP1174-20130828|22763_1  62 KENPGAKAALMSGPPGIGKSTAANLIARL 90 
                  555566777899***************85 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00019     0.071      84     109 ..      65      90 ..      53      96 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
    TIGR02902  84 pnpqhviiyGppGvGktaaarlvlee 109
                  p  +  ++ GppG+Gk++aa l+ + 
  MMETSP1174-20130828|22763_1  65 PGAKAALMSGPPGIGKSTAANLIARL 90 
                  555677899***********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 441.22
//
Query:       MMETSP1174-20130828|22764_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 585.15
//
Query:       MMETSP1174-20130828|22766_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|22769_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.7   0.0       0.14    9.4   0.0    2.2  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.019        79      70      93 ..     136     159 ..     124     178 .. 0.69
   2 ?    9.4   0.0   3.5e-05      0.14     110     158 ..     258     310 ..     250     351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.019
    TIGR03724  70 eekkivmeyiegkklkdlleekel 93 
                   ++++vm +ieg  +++ll +++ 
  MMETSP1174-20130828|22769_1 136 GTSSLVMTKIEGVSFSQLLVDQTV 159
                  5679**********9999887544 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 3.5e-05
    TIGR03724 110 givhgDlttsNiivk..ddklyliDf..GLgkkskevedkavDlhvlkrsles 158
                  +++hgD+  sN +++  ++k+ ++D+   Lg+k  ++ d   Dl  l +sl +
  MMETSP1174-20130828|22769_1 258 RFIHGDPVLSNCLLEqsTGKVRFVDMrgALGSKLTTAGDILYDLSKLYQSLCG 310
                  69************534789*****8667****99************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1280.65
//
Query:       MMETSP1174-20130828|22772_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1174-20130828|22775_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 839.07
//
Query:       MMETSP1174-20130828|22771_1  [L=1409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-215  714.1   3.4   4.4e-129  429.8   0.1    3.6  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.5e-132  441.4   4.5    4.2e-90  300.7   0.1    3.9  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.2e-77  258.2   4.5    2.8e-53  179.1   1.5    4.7  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.7e-76  255.7   2.1      1e-57  193.7   1.8    4.0  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.5e-75  251.9   0.6    1.1e-59  200.2   0.0    2.9  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.2e-74  249.1   6.4    1.7e-43  147.2   2.5    4.8  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    9.5e-69  230.2   0.9      4e-43  145.5   0.3    3.9  3  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-68  229.6   5.2    8.1e-48  161.1   0.3    3.4  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.2e-67  226.7   1.5    2.8e-48  162.7   0.1    3.7  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-64  216.7   2.3      1e-43  147.5   0.0    4.3  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.6e-63  210.9   7.6    1.1e-43  147.6   3.7    4.3  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-61  206.9   0.0    2.5e-38  129.9   0.0    3.8  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      2e-59  199.4   0.7      3e-37  126.2   0.0    3.7  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    6.9e-49  164.7   1.0    1.2e-34  117.8   0.0    3.1  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.7e-39  133.5   0.0    1.5e-16   58.4   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      4e-38  129.0   0.0      2e-21   74.4   0.0    4.0  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.2e-35  118.3   0.0      2e-18   64.5   0.0    3.2  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.8e-32  110.6   0.6    1.1e-20   71.7   0.0    3.3  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.5e-30  104.4   0.0    7.6e-17   59.3   0.0    3.3  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.5e-29  101.0   1.0    1.5e-20   71.5   0.0    3.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.5e-29  101.0   0.0    2.8e-14   51.0   0.0    3.2  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    4.2e-29   99.7   0.6    1.6e-12   45.2   0.0    3.2  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.2e-29   99.4   4.0    6.9e-16   56.1   0.9    3.9  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.3e-29   98.9   0.3    2.6e-15   54.4   0.0    3.2  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      9e-29   98.6   0.1    2.7e-16   57.8   0.0    3.9  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.6e-29   98.4   0.1    1.6e-19   68.1   0.0    3.2  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      1e-28   98.3   0.0    3.5e-16   57.3   0.0    3.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.4e-27   94.5   0.7    1.5e-12   45.1   0.1    3.2  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.2e-27   94.0   0.0    4.2e-16   56.9   0.0    3.2  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.7e-27   93.7   0.9    5.1e-17   60.0   0.1    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.3e-27   92.8   0.0    1.1e-15   55.5   0.0    3.3  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.7e-26   90.3   0.0    2.2e-07   28.5   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.2e-25   85.6   1.2    1.8e-15   54.8   0.1    3.7  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.6e-24   82.8   0.0    1.5e-11   42.2   0.0    3.2  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.2e-23   80.0   0.3    6.2e-11   40.2   0.0    3.1  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.5e-23   78.9   2.2      7e-12   42.9   0.1    3.0  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    8.7e-23   78.6   0.1    1.1e-10   39.0   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      4e-20   70.1   0.0    6.8e-11   40.0   0.0    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.1e-19   66.7   2.0    2.5e-10   38.3   0.0    3.9  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
      6e-19   66.2   0.2    1.1e-10   39.2   0.0    3.5  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.6e-18   64.0   1.9    2.3e-08   31.2   0.0    4.4  5  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    4.1e-18   63.2   2.2    2.2e-11   41.1   0.1    2.7  3  TIGR01288 nodI: nodulation ABC transporter NodI
      2e-17   60.8   1.0    5.5e-14   49.4   0.3    3.4  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    4.8e-17   59.5   0.0    8.6e-12   42.2   0.0    3.2  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.4e-16   58.5   0.0    0.00063   17.1   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.5e-16   57.8   0.0      7e-08   29.2   0.0    3.4  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.1e-16   58.1   0.0      3e-12   44.4   0.0    3.1  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.4e-16   57.9   0.0    5.7e-12   43.6   0.0    3.1  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.3e-15   53.1   0.1    7.8e-08   29.2   0.0    3.6  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.1e-15   53.3   0.0    2.1e-10   38.5   0.0    3.1  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.7e-14   48.8   0.1    2.8e-09   32.2   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    2.9e-14   50.9   0.0    4.9e-09   33.8   0.0    3.3  3  TIGR01978 sufC: FeS assembly ATPase SufC
    8.2e-14   48.9   0.0    1.9e-09   34.4   0.0    3.4  3  TIGR00955 3a01204: pigment precursor permease
      3e-11   40.3   1.1      1e-07   28.6   0.0    2.8  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.7e-11   40.0   0.2    8.9e-05   19.9   0.0    4.2  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.1e-08   31.5   0.0      0.012   11.6   0.0    3.1  3  TIGR00630 uvra: excinuclease ABC subunit A
    2.6e-06   23.2   0.1     0.0026   13.2   0.0    3.3  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0018   15.3   0.2       0.56    7.1   0.0    2.3  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
  ------ inclusion threshold ------
      0.012   12.7   0.0       0.95    6.4   0.0    2.3  2  TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
      0.017   11.9   0.2       0.36    7.5   0.0    2.6  3  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
      0.045   11.4   0.6       0.37    8.4   0.1    2.5  3  TIGR00231 small_GTP: small GTP-binding protein domain
      0.046    9.7   0.0        2.2    4.1   0.0    2.1  2  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
       0.05   10.4   0.0       0.85    6.4   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.071    9.1   0.0       0.63    6.0   0.0    2.0  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
       0.12    9.6   0.4       0.45    7.7   0.1    2.0  2  TIGR00436 era: GTP-binding protein Era
       0.18    7.3   0.1       0.27    6.7   0.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.31    6.7   0.4        2.8    3.5   0.0    1.9  2  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.2     3e-45   1.8e-43     341     689 ..      10     380 ..       3     384 .. 0.81
   2 !  136.0   0.0   3.3e-42     2e-40     701     833 ..     469     604 ..     461     611 .. 0.91
   3 !  429.8   0.1  7.3e-131  4.4e-129     932    1508 ..     745    1341 ..     715    1344 .. 0.91

  Alignments for each domain:
  == domain 1    score: 146.1 bits;  conditional E-value: 3e-45
    TIGR00957 341 ellikfvndrkapdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwv.ctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqee..........lepd.........sierrsikdgegnsitvknatftwa......rdepptlngltlsipegalvavvgqvgcgkssllsallaemd 689
                  +ll+  ++d    + +g l   ++ +s+  q +   q        g+r+++av+ avy k l   ++a k   +g  vnl+s da+ +  + t+ n +w+ap+q  +a+  l+  +g + + g+ ++v+ +    ++  ++k +q +    +d r+ l+  ++ gi+++k++awe+a+k k++  r+ el  l  sa l+   +f  +  +  +v ++t++v+ ++ ++ i   ++ f +lalfn lr  l i p+vi   +qa v   rl+ fl   e          l pd         s++  + ++ eg       a+f w       ++ pptl ++ ++ip  a+ +vvg+ g gkss+lsall+e++
  MMETSP1174-20130828|22771_1  10 HLLLGCIQDGCGFSLRGLLGIIIFGISSFSQGVCDTQRLCRGKRVGLRVQAAVMAAVYDKGLKC-DTADKNFNIGTAVNLLSADARNLCRFYTFGNQVWTAPIQTSIAITALFWLIGWAAIGGLVFLVMAMIATNMLVQRIKWHQRRLEGFRDLRVGLLHMVVLGIRIIKMFAWEPAYKCKLTEKRDAELVHL--SAKLKYGIAFKVLrYAGTFVGFVTFMVHTVIRHKTI-TVQEGFTALALFNTLRSGLMIWPQVINMSIQAHVGYGRLKRFLDAPEvpgkpsfistLGPDeysgcapalSVQGGTFSHNEGMPARNTGAAFRWRgnskndHKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  566666777777777777777777788888888888888888889****************975.7788999**************************************99999**********9998776677778899999999999************************************9998655..66666666665542456789********99987766.6899***************************************9988222222222233433322222233444444455555555556778885333222457*************************************86 PP

  == domain 2    score: 136.0 bits;  conditional E-value: 3.3e-42
    TIGR00957 701 vayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysd.adiyllddplsavdahvakhifekvi.gpkgllknktrilvthgisy.lpqvdviiv 833
                  + yvpq+ wi n s+r+ni++g a++ ++y +v++ac+l  dl+ilp+gd teige+g nlsggq+qrvslara y +  +++lldd lsavdahv+  i++k i g     +n t ilvth i   l  vd i++
  MMETSP1174-20130828|22771_1 469 LGYVPQKPWILNRSIRDNIILGSAFHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKCIlGLLRKQRNATVILVTHQIDLcLRGVDRILL 604
                  57**************************************************************************86369*********************9763667777899*********853667777765 PP

  == domain 3    score: 429.8 bits;  conditional E-value: 7.3e-131
    TIGR00957  932 akeetwklmeadkaqigqvklsvywdyakai.glfitllsillflcnsvsalasnywlslwtdda....vvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeyset.ekeapwqie.......etap.psswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe...........dctvltiahrlntimdytrvlvldkgevaefdapsellq 1508
                    + + ++l++ +k + g++ l +y +y+ +  gl   ++   l ++ +   +  n+ +s w d+      vd+ +en  + + +y ++g l  +++l+ +   + g + asr  h++++  +l +p s+++ tp g+++nrfs +l   d  + + +  ++++  +v++ viv+l+  p + v+++p+  l +    +y+ ++r+lkrl+s +rsp+y  f+e l g   ira + q  f     ++ de  ka     v+nrwl +rl+ +   +v+  a+fa+   + l aglv l   ys+q t +   +++  + +e ++  ver  eys+   +e  w  +          p  ++wp++g++ +r  +++y  +    l dln+ i  g +vg+vgrtgagks+l+ +lfr++e  +g++ +dg++ a +glhd+r  ++iipqd  lf g++r nld f ++sdee+w +l++a l d +  lp kl  e   gg nlsvg+rql+c++rallr +kil++deata+vd  td +iq tir   +           +c+++ +ahrl+ti+ y +vlvld g+vae+d+p+ ll+
  MMETSP1174-20130828|22771_1  745 EQAAVGQLVRPEKRNKGKISLRLYLNYMYSAgGLSFGVIWTSLGFGVQGMYFIQNLVFSDWVDQMsgedGVDTAKENGAMLMYLYVTVGYL--ALILLRATISAFGSLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVAVFALYESDHLMAGLVLL---YSVQYTNACRLFIKQHASVEMQMNYVERCDEYSRLpAQEGSWHSDpdlwktlVKDPvTDTWPPKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatesrlKCSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALLT 1341
                   4556789*********************866156666666666666666677899999999987532236889999999999999999988..578888999999************************************************************************************999999**************************************************************************************************99966...*********************************963578888654212111122332589******************************************************************************************************************************************************************************************96432112223333345**********************************9985 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.8   5.2e-15   3.2e-13     148     352 ..      53     257 ..      48     291 .. 0.86
   2 ?    4.7   0.0     0.014      0.84     439     477 ..     342     380 ..     313     387 .. 0.84
   3 !   87.8   0.0   1.2e-27   7.3e-26     487     620 ..     467     605 ..     461     614 .. 0.91
   4 !  300.7   0.1   6.8e-92   4.2e-90     926    1440 ..     824    1341 ..     764    1368 .. 0.92

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 5.2e-15
    TIGR01271 148 hlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvel.kltrkvayvryfsssafffsgllvvvlsvvpyali..kgiilrrifttisycivlrmtvt 352
                   +g++++ a+++ +y k lk  +      ++g  v lls++   l    ++   vw ap+q  + +  ++ l+  +a+ gl fl++  +   +l +++  ++ +  g  + r+ +   ++  i+ +k+++we a +  + + r++el +l+ k+ y   f+     ++g +v +++ + +++i  k+i ++  ft+++    lr  + 
  MMETSP1174-20130828|22771_1  53 RVGLRVQAAVMAAVYDKGLKCDTA-DKNFNIGTAVNLLSADARNLCRFYTFGNQVWTAPIQTSIAITALFWLIGWAAIGGLVFLVMAMIATNMLVQRIKWHQRRLEGFRDLRVGLLHMVVLGIRIIKMFAWEPAYKCKLTEKRDAELvHLSAKLKYGIAFKVL--RYAGTFVGFVTFMVHTVIrhKTITVQEGFTALALFNTLRSGLM 257
                  689*****************8764.4458*********************************999988888***************************99999999******************************999999*99974688888888877765..46788888888888887644799*******9999888886654 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.014
    TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgele 477
                   p l  + +++    + +v g  gsgkss+l  +lgel+
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  467888888888888899999999999999999999986 PP

  == domain 3    score: 87.8 bits;  conditional E-value: 1.2e-27
    TIGR01271 487 grisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykd.adlylldspfsyldvvtekeifesclcklla...nktrilvtskle.hlkkadkilll 620
                    + + pq +wi+  +i+dnii+g ++   ry  vi+ac l  d+ +l+  d t +ge g  lsggq+ r+slara y+   +++lld  +s +d      i+++c+  ll    n t ilvt +++  l+  d+ill+
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIILGSAFHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKCILGLLRkqrNATVILVTHQIDlCLRGVDRILLF 605
                  4678**************************************************************************96379************************999863336799*******9457889***997 PP

  == domain 4    score: 300.7 bits;  conditional E-value: 6.8e-92
    TIGR01271  926 yilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlk...qafs........nctvilsehrveallecqqflviegssvkqydsiqklln 1440
                    ++y+yv+v    lal +lr        l  s+  h+ m+  +l+ap++ ++    gr++nrfs d++ +d  +   l+ +++    vl  ++vv v+qp+++v  ipv+ + +     +++ +++lk+l+s +rspi+  +   l gl ++ra+  qs+f   f    + ht   +    + rw+ +r++ +  l  +av+  a+  +d+     g++l  +++ +++ +  ++   +v+  m  v+r   +  lp++e+  ++  ++ +l k lv +   v+++wp +g++ +++lt++y ++ +  l dl + + +g rvg++grtg+gkstl sal+rll+   g++ +dgv    + l + r+af +ipq   ++ gt+r nld ++ +sdeeiw   +   l   i  +p+kl   +  gg  ls g +ql+c++r++l  akil++de +a +dp t  ii+ t++   q+          +c++i   hr+e+++  ++ lv+++ +v +yds   ll+
  MMETSP1174-20130828|22771_1  824 MLMYLYVTV--GYLALILLRATISAFGSLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVAVFALYESDH--LMAGLVLLYSVQYTNACRLFIKQHASVEMQMNYVERCDEYSRLPAQEGSWHS--DP-DLWKTLVKD--PVTDTWPPKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEpVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRgiaQSVNkdatesrlKCSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALLT 1341
                   578888887..58****************************************************************************************************************************************************************9999888899*****************99999876655..56899***************************************99665433..33.678888865..699***********************************************************97479***********************************************************************************************************************9988753333332222222337********************************999987 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.68        41     217     345 ..      55     183 ..      40     228 .. 0.66
   2 ?    3.5   0.0      0.06       3.7     478     518 ..     340     380 ..     334     383 .. 0.85
   3 !   68.7   0.0   1.1e-21   6.7e-20     541     674 ..     467     605 ..     462     610 .. 0.87
   4 !  179.1   1.5   4.6e-55   2.8e-53     268     693 ..     901    1344 ..     896    1347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.68
    TIGR03375 217 gkkvdlilsaklfervlglrlearpasvGsfasqlr.efesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnae 345
                  g +v   + a+++ + l+ + ++++  +G+ ++ l  +  ++  f t    +  + +   + + ++++lig+  +   +++v++++++++l+q+ ++ + ++       + +ll   + g+  ik+ + e
  MMETSP1174-20130828|22771_1  55 GLRVQAAVMAAVYDKGLKCDTADKNFNIGTAVNLLSaDARNLCRFYTFGNQVWTAPIQTSIAITALFWLIGWAAIGGLVFLVMAMIATNMLVQR-IKWHQRRLEGFRDLRVGLLHMVVLGIRIIKMFAWE 183
                  5556666666666666777777777777777777742556666666655555555555555556666777777777777777777777777775.55555555555666666666666666666666555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.06
    TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglye 518
                  ++ ++L  v+++i +     ++G  GsGKs+ l  llg ++
  MMETSP1174-20130828|22771_1 340 KTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  56789999999999999999***********9988888665 PP

  == domain 3    score: 68.7 bits;  conditional E-value: 1.1e-21
    TIGR03375 541 rnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkd.ppillLDEPtsalDnssee....kllerLkelladkTlvlvtHrtsl.Lelvdriivl 674
                  +++gyvpq++++++ ++rdNi lg++ ++ ++   ++++  + + ++  p+G  + igerG++LSgGQ+q v+laRa +++  +++lLD+  sa+D++  e    k++  L +  ++ T++lvtH+  l L+ vdri+++
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIILGSA-FHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEaiwnKCILGLLRKQRNATVILVTHQIDLcLRGVDRILLF 605
                  689*********************99.5667899********************************************987369************9866511113445567777799********9976999****987 PP

  == domain 4    score: 179.1 bits;  conditional E-value: 4.6e-55
    TIGR03375  268 alvDLpfvllfllv.ialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviL..sgRalaPlaqlaglltryqqaktalesldelmklp....vereeekrllsrekl.....kGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella....dkT.......lvlvtHrtslLelvdriivldkGrivadGpkdevlealk 693 
                   ++vD    +l +++ + +i ++ ++v++ +v l l ++ l  +  ++l +  +++ +   +   e l+gl++i+al a+s + + +     + +k++l l + +  l+   + +q ++s++vv v v+++ e +  m gL+  + +  +  +   ++q a++ ++++  +   ++  +l +++    ++ +  k+l++ +       kG+++++ ++ +Yp ++k+aL +++l i pG +v+++Gr+G+GKstl+  l +l+ep +G++ ldgvd+  +   d+r++++++pqd+tLf Gt+r N+   +   +dee+ + +++a + + +   p  l   ++ +G++LS G rq++ ++Rall+  +il++DE t+++D ++++ + ++++ +++    d T       ++ v+Hr + +   d+++vld+G++   ++ +++l+ l+
  MMETSP1174-20130828|22771_1  901 SFVDAGAQVLAVVIvVLVIQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLV---MRLQSMTSLVVVAVAVFALYESDHLMAGLVLLYSVqyTNACRLFIKQHASVEMQMNYVERC-DEYSRLPAQEgswhSDPDLWKTLVKDPVTdtwppKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDD-HSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkDATesrlkcsIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALLTPLE 1344
                   667776666665550555666655555555555566665555555666666677777778999***********************9999999998888776666554...5678888888888888888888888888886554411333334567777777777665543.34444444441111233334556665554333348***************************************************************************************************9988.799*********************************************************************999888765544332344444445559************************99999888887776 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.014      0.87     346     377 ..     342     373 ..     326     380 .. 0.86
   2 !   49.1   0.0   1.1e-15   6.6e-14     408     540 ..     468     604 ..     461     610 .. 0.83
   3 !  193.7   1.8   1.7e-59     1e-57      92     554 ..     858    1338 ..     845    1342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.014
    TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvn 377
                   ++l ++ +++ +  ++ +vG+ GsGks+ ++
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLS 373
                  578999**********************9765 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 1.1e-15
    TIGR02203 408 qvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkda.PiLiLDeatsaLDneseRlv.qaa...LerlmkgRttlviahRLs.tiekaDrivv 540
                  ++ +v q+  + + +i +n+  g+    + ++  +++ a  l++ +d lp G  te+Ge+g++LsGGq qR+++aRa ++    + +LD+  sa+D+    ++  +    L r +++ t +++ h +   ++  Dri+ 
  MMETSP1174-20130828|22771_1 468 ELGYVPQKPWILNRSIRDNIILGSA--FHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIwNKCilgLLRKQRNATVILVTHQIDlCLRGVDRILL 604
                  6778999999*************98..7788899*********************************************98537************9855555144331144555666889999*99735788888886 PP

  == domain 3    score: 193.7 bits;  conditional E-value: 1.7e-59
    TIGR02203   92 kklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllyls.WqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalik.plksLtnvsaklqkglaaaesvfallDsp....pekdeGt.ralerv......rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk....gRtt.......lviahRLstiekaDrivvlddGkiverGthee 554 
                   +++++++l++p + +d ++ g++++r+ +d +   ++++d l  +v  +++v++++iv+l ++ W++  +++ ++ +  + ++ + +  r++++    + + +    +e l g   ++  ++q    + f    ++ ++ +l +  ++      +q ++s+ + +v + al++  +++l +G +  + +  +  ++  +k+ + v+ ++   +  +++   l  ++    ++ d  +  +++ v      +G++++r +t++yp++ ++al +++l++ +G++v +vGr G+Gkstl++ l R +ep +G++ lDgvd a l L+++R+ +a++ qd +LF++ti  n+   + ++ +++e+ + l+ a+l d +  lp  l  ev   gs+Ls G Rq l ++Rall+ a iLi+Deat+++D   +  +q+++  + +    + t        + +ahRL ti   D+++vld+Gk+ e  +   
  MMETSP1174-20130828|22771_1  858 QAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQpWTFV-VMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVAVFALYE--SDHLMAGLVLLYSVQYTNACRlFIKQHASVEMQMNY-VERCDEYSRLPAQEgswhSDPDLWKtLVKDPVtdtwppKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLD--AFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkDATEsrlkcsiICVAHRLETIIYYDKVLVLDEGKVAEYDSPAA 1338
                   689***************************************************99887766528753.33334444445555666677777777778888899999***********************9999999998888887777666666666666555555555555..567789988877666655444269******999975.455555544433321111223322202222232223338*************************************************************************************************96..455689**************************************************************************99865543111144422222333679*********************99766555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.68        42     492     521 ..     342     371 ..     337     383 .. 0.79
   2 !   47.7   0.0   2.3e-15   1.4e-13     555     685 ..     469     606 ..     462     615 .. 0.84
   3 !  200.2   0.0   1.7e-61   1.1e-59     196     692 ..     824    1333 ..     805    1344 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.68
    TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGksti 521
                  +p +  +++++ + +   +vG+ GsGks  
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSF 371
                  677888889999999999*********974 PP

  == domain 2    score: 47.7 bits;  conditional E-value: 2.3e-15
    TIGR03796 555 lalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknP.siLilDEatsaLDaetEkaiden.....l.rrRgctciivaHRLs.tiRdcdeiivle 685
                  l +v q+  +++ ++rdn+ l  ++   ++  + +   +++ ++  +p+g  +e+ e g+nlsGGq+qR+ +ARa  ++   + +lD++ sa+Da++ +ai ++     l ++R+ t+i+v+H +   +R +d+i+++ 
  MMETSP1174-20130828|22771_1 469 LGYVPQKPWILNRSIRDNIIL-GSAFHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNKcilglLrKQRNATVILVTHQIDlCLRGVDRILLFG 606
                  7789999999999******87.5667777777777777999**********************************998862699***********998777665332225457***********97479******9875 PP

  == domain 3    score: 200.2 bits;  conditional E-value: 1.7e-61
    TIGR03796  196 lllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee......eeekaaeseek......ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr.............rRgctciivaHRLstiRdcdeiivlerGkvver 692 
                   +l+ l +t+    +l ll+ ++ +  + + +    + ++ +il+ Pv++++    g + +R +++  +  + + ++l + v +   v+  ++v+l+ +++  +++i +  + +++ +l  +   +++r   ++++ ++g   + l  +++++A  ++s ff+ ++    +  +ae +l v++ +l +    l+s+ts ++++v+ + + e++  +  lv   s  +++++  + ++++ ++++     +er d+  + p++e   +      ++        k         +G++++r++t  y  + +p + d++l + pG+rv +vG  G+Gkst+a  +  l ep++G++++Dg++ + +  + +++++a++ qd +lfegt+r nl  +d+  ++e++   +k A++ d+i  +pg+++ae+  gg+nls G+rq l + RaL +   iLi+DEat+++D++t+ +i++ +r             r  c++i vaHRL ti   d+++vl++Gkv e 
  MMETSP1174-20130828|22771_1  824 MLMYLYVTVG-YLALILLRATISAFGSLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSDlTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVM---RLQSMTSLVVVAVAVFALYESDHLMAGLVLLYS--VQYTNACRLFIKQHASVEMQMNYVERCDEYSRLPAQEGSWHsdpdlwKTLV------KdpvtdtWPPKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDH-SDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRgiaqsvnkdatesRLKCSIICVAHRLETIIYYDKVLVLDEGKVAEY 1333
                   5555555544.4567889999999999999********************************98734566778888988888888888888888899999888999999999998888888888877777778888999999999999999999999*************************99876...567777777777777777777554444554444..467788888888888888888889999999988887766553344432222......2233444889*******************************************************************************************************96.8999************************************************************************9986666666555554568***************************986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.44        27      64     211 ..      47     192 ..      24     198 .. 0.72
   2 !   18.4   0.0   2.9e-06   0.00018     332     374 ..     339     381 ..     313     385 .. 0.85
   3 !   77.9   0.0   2.8e-24   1.7e-22     395     526 ..     466     602 ..     444     605 .. 0.85
   4 !  147.2   2.5   2.9e-45   1.7e-43      21     529 .]     797    1325 ..     782    1325 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.44
    TIGR02857  64 keaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavlt.adwis.alillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfld.lvrglptLklfgrakaeaaaikr 211
                  + + ++r++++v++++ +++ +k ++  +a+ +  + g+++ ll    ++l  +++ +  q+  a i + + ++a+++ + w++ + +++l++ +i   m++      +  +++l+ +  L   +l  +v g+  +k+f+ + a + ++++
  MMETSP1174-20130828|22771_1  47 RLCRGKRVGLRVQAAVMAAVYDKGLKCDTADKN-FNIGTAVNLLSADARNLCRFYT-FGNQVWTAPIQTSIAITALFWlIGWAAiGGLVFLVMAMIATNMLVQRI---KWHQRRLEGFRDLRVGLLHmVVLGIRIIKMFAWEPAYKCKLTE 192
                  556778889999999999999999998777666.8899999999999999999986.888888888888777777765256665444666667778777765333...4556777777777766666156799999999888777766665 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.9e-06
    TIGR02857 332 egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvep 374
                  + + p l+ v +++++  ++ +vG+ G+GKs+ l++llg +++
  MMETSP1174-20130828|22771_1 339 HKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  3344999********************************9876 PP

  == domain 3    score: 77.9 bits;  conditional E-value: 2.8e-24
    TIGR02857 395 rkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda.pllllDEPtahLDaeteaev.lealrela...egrtvllvaHrlala.eladki 526
                   k++++vpQkP++++ ++++ni l+++   +    +++++++l + ++ lp+g  teiGerg++LSgGq+qR++LAra +r+  ++ llD   +++Da+  +++ ++ +  l+   +++tv+lv+H+  l  + +d+i
  MMETSP1174-20130828|22771_1 466 SKELGYVPQKPWILNRSIRDNIILGSAFHWNR-YWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIwNKCILGLLrkqRNATVILVTHQIDLClRGVDRI 602
                  6789*********************9877666.899*********************************************999**************976655155555554333899*******987641456666 PP

  == domain 4    score: 147.2 bits;  conditional E-value: 2.9e-45
    TIGR02857   21 aqAallarvvssliaageala..elltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaa.aealvevldaeeqpeaekapltaaass................slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegr...........tvllvaHrlalaeladkivvl 529 
                   +q  + +  v+++ + + +++  +   a+++ + v+++  +l +l+  ++a +++++++   +++++++++   ++   ++ g+++      + + d  +   l   v a    l+++++vl+++    ++++ ++ l   +  L  + a + +r    + s + g f+++++gl+ ++++ +++   +a     +e+ ++ ++   ++    lv+ l +  s  +vAV + + l+ ++ +l +gL+ L  +   y    +l  + Ha+ e +   +e   e       p +e +   + + +                +l++++++v+y+ ++ pal++++l ++pg++v++vG  GaGKstl ++l +++ep +G++ ++g++ a l  ++ r+  a +pQ ++lfegt++ n+   + d s++e+ ++l+ a+l++ +  lp  l+ e+  +g++LS+G+rq l + rallr a++l++DE ta++D++t+a +++++r +a+             +++ vaHrl+++  +dk++vl
  MMETSP1174-20130828|22771_1  797 IQNLVFSDWVDQM-SGEDGVDtaKENGAMLMYLYVTVGYLALILLRATISAFGSLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELAL-WVSN-RWLVMRLQSMTSLVVVAVAV-FALYESD-HLMAGLVLLYSV--QYTNACRLFIKQHASVEMQMNyVERCDEYSR---LPAQEGSWHSDPDLWktlvkdpvtdtwppkgHLRIRGLTVQYPSQTkPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFD-DHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVnkdatesrlkcSIICVAHRLETIIYYDKVLVL 1325
                   5666677777777.4333333003333455566677788889999999************************99************************9999999***************************999999999999***********999**************************999999999999999998864.4432.34788888888888888887.8888876.688898755544..6777777888889988765440344444333...222222222222222445578999******************98888*********************************************************************************9765.667788**************************************************************************998864312222222333589999999999999999876 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0013     0.078     501     527 ..     349     375 ..     338     380 .. 0.79
   2 !   70.1   0.0   4.2e-22   2.5e-20     556     688 ..     468     607 ..     464     619 .. 0.85
   3 !  145.5   0.3   6.5e-45     4e-43     229     694 ..     849    1333 ..     801    1344 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0013
    TIGR00958 501 tftlepGevvalVGPsGsGKStvaall 527
                     + +  ++++VGP GsGKS+  + l
  MMETSP1174-20130828|22771_1 349 RVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  556777889*************87655 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 4.2e-22
    TIGR00958 556 kvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPr.vLiLDeAtSALDaeveqllqe......sksaksrtvlliahrLstvek.adkilvlkk 688
                  +++ V q P + ++s+r+Ni  G      ++   +  a++    +  l+ g  te+ge+G+ lsgGq+qr+ +ARA  r+ + v +LD+  SA+Da+v +++ +       +++++ tv+l++h++ ++ + +d+il+  k
  MMETSP1174-20130828|22771_1 468 ELGYVPQKPWILNRSIRDNIILGSAFHW-NRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGVeVFLLDDVLSAVDAHVSEAIWNkcilglLRKQRNATVILVTHQIDLCLRgVDRILLFGK 607
                  567899*****************87765.566777788888777899********************************9754*************877776655666669****************98552678877665 PP

  == domain 3    score: 145.5 bits;  conditional E-value: 6.5e-45
    TIGR00958  229 marinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevq..eavakanqv..aeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyl.........dRkPqlelsgtlapknl....eGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa...........eveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvel 694 
                   + r ++  ++ ++  +l+  + ++d+++ G ++ R ssD +     + +++  ++ +  ++l+ +i+ l + p  t+v ++  P+v  ++ ++ + y + ++e++  ++++++       E l+gl  +r   a     + f+ + +e  +     al +    ++++l  +++lv+v a+ +  + e++     Lv  lLY +q ++a r + + + ++  +    e+  ey             P l ++    p ++    +G+++ +  +  YPs+  kp l dL++ + pG+ v +VG  G GKSt a+ l +l +P  Gq+ lDg++   +  + +++  a++ q+  lf+g++r N+    ++  dee+ a+ k a+  d i  l+     ev   Gs ls+G +q + + RAL+r   +Li+DeAt+ +D             + q +++  ++s+ + +++ +ahrL+t+   dk+lvl +g+v e 
  MMETSP1174-20130828|22771_1  849 SLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQP-WTFVVMI--PVVC-LSLTYAHLYIQCARELKrlDSTTRSPIYggFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKA--ELALWVSNRWLVMRLQSMTSLVVV-AVAVFALYESDHLMAGLV--LLYSVQYTNACRLFIKQHASVEMQMNYVERCDEYSrlpaqegswHSDPDLWKTLVKDPVTDtwppKGHLRIRGLTVQYPSQT-KPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLD-AFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPatdaiiqdtirGIAQSVNKdaTESRLKCSIICVAHRLETIIYYDKVLVLDEGKVAEY 1333
                   44444445677999************************************************99999998877.4777665..5444.45567777777777776446777775432268************99988777777766665443..335555555566666666666555.555555555544445555..8********************999999***999941111111112334444444444443333337**************96.799******************************************************************************96.689999***************************************************************999856666666555444455445556667789*************************995 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00027     0.017     342     387 ..     336     381 ..     307     384 .. 0.82
   2 !   57.4   0.0   3.5e-18   2.1e-16     408     529 ..     466     591 ..     444     592 .. 0.88
   3 !  161.1   0.3   1.3e-49   8.1e-48      99     515 ..     867    1287 ..     844    1313 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00027
    TIGR02868 342 vsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldp 387
                   +  + ++ l +v+++++  + + vvG+ G+GKs  l++l+g l++
  MMETSP1174-20130828|22771_1 336 KNDHKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  4445566699*******************************98875 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 3.5e-18
    TIGR02868 408 rrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLl.adapvllLDEPtehLDaeteeelled....Llaaeegrtvvlvthr 529
                  ++   +++q++ + + ++r+N+ l+ +    +  ++++ +  L + l+ Lp G  t++ge+g+ lSGG++qR+ lARa   +  +v lLD     +Da+++e++ ++    Ll  +++ tv+lvth+
  MMETSP1174-20130828|22771_1 466 SKELGYVPQKPWILNRSIRDNIILGSA-FHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNKcilgLLRKQRNATVILVTHQ 591
                  567889*******************87.566789********************************************985789******************998763333668888888******8 PP

  == domain 3    score: 161.1 bits;  conditional E-value: 1.3e-49
    TIGR02868   99 aalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak...........vevaeasapaaeaaas............ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl 515 
                   a  ++  +   G +++r+++D    +  ++  +   v A + +la+v ++ ++++    v+++ +++  +  + + +  ar+ ++     rs ++   +++l+g++ +++  a+  + ++ +   +e t+ae      +++     + ++ l+v+++++ +    +d+     +  ++ L +   ++a+  + +  ++++   +  eR +e  + +                          +             k +l++r+l+v+yp + + +l++++l ++pG rv vvG++GaGKstL+++l++ll+p +G++ ldgv+ a l  ++vr++ ++++qda lF+ t+r Nl  a +d +dee++a L+ ++Lad +  Lp+ l +++ +gg+ lS Gerq l + RaLl  a++l++DE t+++D++t + + ++++
  MMETSP1174-20130828|22771_1  867 APVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWT-FVVMIPVVCLSLTYAHLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVAVFALYE-SDHL----MAGLVLLYSVQYTNACRLFIKQHASVEMQMNYVERCDEYSRLPaqegswhsdpdLW-------------KtlvkdpvtdtwpPKGHLRIRGLTVQYPSQTKpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLD-AFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIR 1287
                   445566666779999999999999999999999999999988888888777776655.555566667778888999999******************************************9999999999887777777766666666666666666666622.3333....444566889999******9999999999999******9988873334444333322.............22334555555555899*************999********************************************************************************8.899***********************************************************************9876665554 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       6.6   4.1e+02     196     291 ..      47     144 ..      29     247 .. 0.63
   2 !    9.2   0.0    0.0013     0.083     464     501 ..     340     377 ..     323     381 .. 0.91
   3 !   51.2   0.0   2.6e-16   1.6e-14     527     656 ..     467     604 ..     463     610 .. 0.85
   4 !  162.7   0.1   4.5e-50   2.8e-48     205     672 ..     850    1340 ..     818    1343 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 6.6
    TIGR03797 196 qslavlRletavdaslqaavwdrLLrlpas..fFreysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiav 291
                  +     R+  +v+a+++aav+d+ L+  ++   F   +a +L+s          ++++++ +a + + +a++ l+ l+ + +   lv +++a++a+ +
  MMETSP1174-20130828|22771_1  47 RLCRGKRVGLRVQAAVMAAVYDKGLKCDTAdkNFNIGTAVNLLSADARNLCRFYTFGNQVWTAPIQTSIAITALFWLIGWAAIGGLVFLVMAMIATNM 144
                  55555677778888888888888888765311444444444444322222222345556666666666666666666655554444444444444333 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
    TIGR03797 464 dgplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                   +p +L  v ++i       +vG+ GsGKS++l  LLg
  MMETSP1174-20130828|22771_1 340 KTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  5688999999***999999*****************98 PP

  == domain 3    score: 51.2 bits;  conditional E-value: 2.6e-16
    TIGR03797 527 rqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkP.rillfDEATSALDNrtQaiVses..l....eklkvtRiviAHRLS.Tirnadrilv 656
                  + lG V Q+  +l  si +ni+ g+ +  ++ w+++    l +D++ +P g  T i e g++lSGGQ+QR+ +Ara  r+  +++l+D+  SA+D +  +++ +   l    ++ ++t i++ H +   +r  dril 
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIILGSAFHWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNKciLgllrKQRNATVILVTHQIDlCLRGVDRILL 604
                  6899**************************************************************************99648************9998887664221223345567888888887624566677765 PP

  == domain 4    score: 162.7 bits;  conditional E-value: 4.5e-50
    TIGR03797  205 tavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerklle..legklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsf....lafntafgsflkavtslaetlievlavvplyera...kPileaepEvdee.....kvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl.............eklkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLl 672 
                    +++   + a++ r+L+ p+s++ +   g + +r ++ +++    + + + + + ++   l  ++++lv  ++     v++ +v + +t +  ++q  +e k l+  +++ + g   ++++g++ +r   a++ +f a++ +  e++k el+    + +l +  + +  l+++++ ++a +  ++++l +g      + ++ a   f+k   s+ ++ ++ ++    y+r+   +  +++ p+  ++      +d    +G+++++ +t +Y ++++  L d++l i pG+ v++vG  G+GKStl   L+   +P  G+++ DG d + l ++ vR+ + ++ Q++ l+ g+i +n+ +    + +e w+ ++ a l++ i  +P  l   +  gg++lS G rQ l + ral r  +il++DEAT  +D  t ai+ +++             ++lk + i +AHRL Ti   d++lvl+eG+v+e  s   Ll
  MMETSP1174-20130828|22771_1  850 LRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSSdLTSFDTEVMDELYSFVDAGAQVLAVVIVVLV--IQPWTFVVMIPVVCLSLTYAHLYIQCARELKRLDstTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVAVFALY--ESDHLMAGLVllysVQYTNACRLFIKQHASVEMQ-MNYVERCDEYSRLpaqEGSWHSDPDLWKTlvkdpVTDTWPPKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIrgiaqsvnkdateSRLKCSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALL 1340
                   4444455689************************87647777777777777777666555544444444..34445566677777777777777777776666651156779***************************************999999988877666666655555555444..5556666655000055555555555544333332.223333344444311134566666654431000033334458******************************************************************************************************************************************************************************9998876522222223333334789999*************************988877775 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0075      0.46     466     504 ..     338     377 ..     320     383 .. 0.82
   2 !   57.3   0.0   3.2e-18   1.9e-16     531     666 ..     467     607 ..     462     618 .. 0.80
   3 ?    0.0   0.8      0.69        42     151     293 ..     791     935 ..     778     997 .. 0.74
   4 !  147.5   0.0   1.6e-45     1e-43     453     679 ..    1104    1340 ..    1097    1349 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0075
    TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkst.ltkllq 504
                  ++ +p+ l+ + ++i++  +  +vGp GsGks  l+ ll 
  MMETSP1174-20130828|22771_1 338 DHKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSfLSALLG 377
                  567899*************************973556665 PP

  == domain 2    score: 57.3 bits;  conditional E-value: 3.2e-18
    TIGR01846 531 rqvgvvlqenvlfsrsirdnialakPai..seekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvan.Prilildeatsaldyeseavimrn....lreickgrtviiiahrls.tvraadrilvlek 666
                  +++g v q+  +++rsirdni l++         vi a  l    + +  l+ G  te+ge+G++lsGGq+qr++lara       +++ld+  sa+d++  ++i ++    l +  ++ tvi ++h+++ ++r +dril++ k
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIILGSAFHwnRYWDVIDACCLR---HDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKcilgLLRKQRNATVILVTHQIDlCLRGVDRILLFGK 607
                  568899999**************9865411334566666665...445679****************************9876268************9977777665332244557888*********8579*******9865 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.69
    TIGR01846 151 lqllalvsPllfevvidkvlvhrglstlsvlalal..lavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltg..saltvvldllfvvvflavmffyspkltlvvlvslviyll 293
                  +q + ++  l+f   +d++  + g++t +  +  l  l v+v  +al llr+++ a  + r        +   +l  P+s+++   +G ++ r     ++ +f t+    l + +d    v+ + ++       t+vv++ +v+  l
  MMETSP1174-20130828|22771_1 791 VQGMYFIQNLVFSDWVDQMSGEDGVDTAKENGAMLmyLYVTVGYLALILLRATISAFGSLRASRLQHQAMIARILHAPVSWYDATPIGRVINRFSS--DLTSFDTEvmDELYSFVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSL 935
                  56677889999999999999999999988765444114567778899999***99999888877667778889999***************99863..5555555422467888887666655555555555566666666665333 PP

  == domain 4    score: 147.5 bits;  conditional E-value: 1.6e-45
    TIGR01846  453 kGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg........r...tviiiahrlstvraadrilvlekGkivesGkheell 679 
                   kG+++++ ++ +y  ++ + l++l+l i++G+ +G+vG++G+Gkstl+  l rl  P +G++++dgvd a++    +r+  +++ q++ lf+++ir n+   + + s+e++ a  k+a   d i  l+     ev   G++ls G rq + ++ral+   +ili+deat+++d  ++a+i++ +r i+++        r    +i++ahrl+t+   d++lvl++Gk++e  + + ll
  MMETSP1174-20130828|22771_1 1104 KGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFD-DHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSvnkdatesRlkcSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALL 1340
                   7999***********************************************************************************************9877.567899**************************************************************************99986422222222333369**************************98877776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.8   4.8e+02      78     172 ..      47     141 ..      37     153 .. 0.61
   2 ?    2.3   0.0      0.18        11     355     387 ..     344     376 ..     333     379 .. 0.83
   3 !   55.3   0.0   1.7e-17     1e-15     415     548 ..     468     606 ..     462     616 .. 0.79
   4 !  147.6   3.7   1.8e-45   1.1e-43      95     562 ..     858    1340 ..     805    1346 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 7.8
    TIGR02204  78 rfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllks..vvGaslsialrnlllliGalamlvitsvkltslvllavPlvl 172
                  r+    ++G rv a +  av+++ l+ ++a  ++ + g  +  l+ad+  l      G  +  a  ++ ++i al  l i  + + +lv l++ ++ 
  MMETSP1174-20130828|22771_1  47 RLCRGKRVGLRVQAAVMAAVYDKGLKCDTAD-KNFNIGTAVNLLSADARNLCRfyTFGNQVWTAPIQTSIAITALFWL-IGWAAIGGLVFLVMAMIA 141
                  5555678899999999999999999988874.3344566666777777666541134555555555555555555443.333445555555555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.18
    TIGR02204 355 aldgldltvrpGetvalvGPsGaGkstllelll 387
                  +l ++ +++ +     +vGP G+Gks  l+ ll
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALL 376
                  67777788888888899**********998776 PP

  == domain 3    score: 55.3 bits;  conditional E-value: 1.7e-17
    TIGR02204 415 rlalvpqdsalfaasvleniryGrpdasde..eveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkd.apiLLLdeatsaLdae.seqlvqqa.leelmkgr..ttlviahrLatv.lkadrivvld 548
                  +l  vpq++ ++  s+++ni  G     +   +v++a+   +    +  lp G  t++Gerg +LsGGq+qr+++ara  +    ++LLd+  sa+da+ se   ++  l  l k+r  t +++ h++    +  dri+ + 
  MMETSP1174-20130828|22771_1 468 ELGYVPQKPWILNRSIRDNIILGSAFHWNRywDVIDACCLRHD---LDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHvSEAIWNKCiLGLLRKQRnaTVILVTHQIDLClRGVDRILLFG 606
                  6778*******************97554432378888877665...6789*****************************987368*************835555555514555555543667789*9976515689999875 PP

  == domain 4    score: 147.6 bits;  conditional E-value: 1.8e-45
    TIGR02204   95 kavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPil...lfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliell.........kaksdikaP..aqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk....grtt.......lviahrLatvlkadrivvldkGriveqGthaeLi 562 
                   +a+ a++l+   +++d +  g v+ r+++d t   + v   l   +     ++  +++++++++      ++++P+v l +    l+ +  r+l r    + + + +  +e l+ +  ++a   ++   ++f+++ ++  +a  +      +l++    +    vv+v         +++l aG     +ly+v  + ++  +    + ++     +er  e           +  +d+ +   + p + + + +g++++  ++ +yP+++ ++al +l+l++ pG +v +vG +GaGkstl + l r  +P +G++ ldGvd + l  +++r+ +a++pqd++lf + ++ n+     d sdee+ a+ k a+ ++ i  lp   ++++   g +Ls G +q + ++ra+l+ a+iL++deat+++d  ++  +q  +  + +    + t        + +ahrL t++  d+++vld+G++ e  + a+L+
  MMETSP1174-20130828|22771_1  858 QAMIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAGAQVLAVVIVVLVIQPWT---FVVMIPVVCLSLTyahLYIQCARELKRLDSTTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRWLVMRLQSMTSLVVVAVA--VFALYESDHLMAGL---VLLYSVQYTNACRLFIKQHASVEMQMNYVERCDEYSrlpaqegswHSDPDLWKTlvKDPVTDTWPPKGHLRIRGLTVQYPSQT-KPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkDATEsrlkcsiICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALL 1340
                   567788899999999999999999999999999988887777766777777776666666666643...3455666666554111444555555554444444445555689999999999999999999999998888887776655555665544333222222222..22233445555553...3566666666666666666666666666666655431111001112334443321145666667889***************9.9********************************************************************************974.5689*********************************************************************99999988765543111132212222222679*********************9987766665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.006      0.37     490     521 ..     345     376 ..     340     383 .. 0.83
   2 !   64.0   0.0   3.5e-20   2.2e-18     549     680 ..     468     604 ..     462     611 .. 0.83
   3 !  129.9   0.0   4.1e-40   2.5e-38     235     696 ..     860    1340 ..     791    1343 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.006
    TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllv 521
                  l  + ++i +n  +++vG  GsGks++   l+
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALL 376
                  77899*******************98765554 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 3.5e-20
    TIGR01193 549 linylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsd.skvlildestsnldllte.....kkivenllklkdktiifvahrlsvakk.sdkiiv 680
                   + y+Pq+P+i++ si +n++lg+    + ++ +++++   +++d++ lp G  te+ e ++++sgGq+qr++lara   +  +v++ld++ s +d  +      k i+  l k ++ t+i+v+h+++++ + +d+i+ 
  MMETSP1174-20130828|22771_1 468 ELGYVPQKPWILNRSIRDNIILGSAF--HWNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSeaiwnKCILGLLRKQRNATVILVTHQIDLCLRgVDRILL 604
                  578********************975..567899999999*************************************9876269***********97555011104445555567889*********998543688775 PP

  == domain 3    score: 129.9 bits;  conditional E-value: 4.1e-40
    TIGR01193  235 yikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldl..silvivglvlvlqniklfllslvaiPv...yaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaea.vqqalkavlklilnvvilwvGallvirekltlGqlltfn....allsyflnPleniinlqpklqaarvannrl...nevylvdsefke...kkkltelenlngdievndvsysyGy.gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.....kdkt.......iifvahrlsvakksdkiivldeGkiieqGshkell 696 
                    i  +++ P+s++ +  +G ++ rf+   +  d+     l  f+d   ++l +v +vlv+q  ++ ++++ ++ +   ya + i   + +++l+     + + +     e l+G+++i++l ++++ ++    +  ++ + +l++  +++   + l++++ l++  v +++   l  +++l  G +l ++         f++  +  +++q    +    + rl   +  +  d +  +   k  +t++  ++g++++  ++ +y   ++++l d++l i    ++ +vG +G+Gkstla  l ++ ++  G++ l+g++ + +  h +rq  + +Pq+  +f+G+i  nl  +a ++ s+eei+++++ia++ d i  lp  + +e+   +s++s+G +q l+++rall  +k+li+de+t+++d  t+  i + +  +     kd t       ii vahrl+     dk++vldeGk+ e  s   ll
  MMETSP1174-20130828|22771_1  860 MIARILHAPVSWYDATPIGRVINRFSSDLTSFDTEVMDELYSFVDAgaQVLAVVIVVLVIQPWTF-VVMIPVVCLsltYAHLYIQCARELKRLD---STTRSPIYGGFAEILAGLDSIRALDAQSFFFRAFSVHCDEHTKAELALWVSNRwLVMRLQSMTSLVVVAVAVFA---LYESDHLMAGLVLLYSvqytNACRLFIKQ-HASVEMQMNYVERCDEYSRLpaqEGSWHSDPDLWKtlvKDPVTDTWPPKGHLRIRGLTVQYPSqTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNL--DAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIaqsvnKDATesrlkcsIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALL 1340
                   5788999******************9777777887777788899972246666777777777664.4433334430125555555555555554...56678889999***********************************9877665267888888888765444332...33344444455444440000444555554.344677777777667777873322245555554441223456888889*************751678*******************************************************************************6..89999*******************************************************************99888766554433311111122222333349*************************988877776 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     0.002      0.12     330     368 ..     341     379 ..     332     383 .. 0.86
   2 !   60.2   0.0   4.8e-19   2.9e-17     392     526 ..     467     605 ..     460     619 .. 0.82
   3 ?   -3.0   0.5       6.5     4e+02     118     158 ..     897     936 ..     819     957 .. 0.55
   4 !  126.2   0.0   4.9e-39     3e-37     312     538 ..    1102    1337 ..    1072    1343 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.002
    TIGR01842 330 kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvw 368
                    +tl+ + +++ + ++  ++Gp gsGkss    l+G  
  MMETSP1174-20130828|22771_1 341 TPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGEL 379
                  4479999**************************999976 PP

  == domain 2    score: 60.2 bits;  conditional E-value: 4.8e-19
    TIGR01842 392 ksiGYlPqdveLfeGtvaeni...aRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPk.lvvLDePnanLDeeGeqalak.alkel..karkitvvvithrpsl.lelvdkilvl 526
                  k++GY+Pq+  +++ ++ +ni   + f+      +vi+a  l   h+l   lp G  teige+G++LsgGq+qR++LaRa y++   + +LD+  + +D++   a+ +  +  l  k+r++tv+++th++ l l+ vd+il++
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIilgSAFHW-NRYWDVIDACCLR--HDLD-ILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHGVeVFLLDDVLSAVDAHVSEAIWNkCILGLlrKQRNATVILVTHQIDLcLRGVDRILLF 605
                  789******************33334555.4456789998775..7874.59*******************************97526789*********9999987625554434678899********975899***9986 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 6.5
    TIGR01842 118 tgliaffDlPwlpiy.llvvfllhpylGllalvgavvlvala 158
                  + l +f+D+   ++  ++vv +++p+  ++++   vv ++l+
  MMETSP1174-20130828|22771_1 897 DELYSFVDAGAQVLAvVIVVLVIQPWTFVVMIP--VVCLSLT 936
                  367888898876665155677889997555443..3334444 PP

  == domain 4    score: 126.2 bits;  conditional E-value: 4.9e-39
    TIGR01842  312 epegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar..........kitvvvithrpsllelvdkilvlkdGalkafGere 538 
                    p+g+l++  ++++ p++ k+ l+++++++ +G  ++++G  g+Gks+La  l    +p++G++ lDg+d      +++ +    +Pqd  LfeGt+  n+  f++   +e++ +  k+a+  + i  lp    +e+ +gG++Ls G rq + + Ral +  k++++De  a++D + ++ + + +  + +           k++++ ++hr + +   dk+lvl++G+++++ +  
  MMETSP1174-20130828|22771_1 1102 PPKGHLRIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDD-HSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSvnkdatesrlKCSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPA 1337
                   59********************************************************************************************************.8999********************************************************************99998886543211111223334789**************************997655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   5.7e-14   3.5e-12     407     541 ..     465     604 ..     456     618 .. 0.78
   2 ?   -1.2   0.3         2   1.2e+02      88     173 ..     851     945 ..     809     967 .. 0.61
   3 !  117.8   0.0   1.9e-36   1.2e-34     332     552 ..    1104    1335 ..    1097    1341 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 5.7e-14
    TIGR01192 407 lrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailkn.apilvldeatsaldvet..earvkdaidalrknr..ttfiiahrls.tvreadlvlf 541
                    k +  v q   +lnrsir+ni lg      +   +  +a + +  ++    g  t +gerg++lsgg++qr+++ara  +    +++ld+  sa+d      +  k  +  lrk+r  t ++++h++   +r  d +l+
  MMETSP1174-20130828|22771_1 465 GSKELGYVPQKPWILNRSIRDNIILGSAFH-WNRYWDVIDACCLRHDLDILPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVseAIWNKCILGLLRKQRnaTVILVTHQIDlCLRGVDRILL 604
                  5567778889999*************8654.455666666666666677778899************************998626899**********7651145556677889998832455678988634677776665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 2
    TIGR01192  88 ratllte..afgriismplswhsqrgtsnalhtl...lra..setlfglw..lefmrqhlatfvallllipvalamdlrlslvlvvlgivyvlia 173
                  ra+ l++   ++ri+  p+sw++     + +  +   l +  +e +  l+  ++   q la ++ +l++ p ++ + + +  + ++ + +y+  a
  MMETSP1174-20130828|22771_1 851 RASRLQHqaMIARILHAPVSWYDATPIGRVINRFssdLTSfdTEVMDELYsfVDAGAQVLAVVIVVLVIQPWTFVVMIPVVCLSLTYAHLYIQCA 945
                  44444321146899999999998766555443221113331133344443114445566777777777777777766666666666666666555 PP

  == domain 3    score: 117.8 bits;  conditional E-value: 1.9e-36
    TIGR01192  332 kgavefrdisfefan.ssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk....nrt.......tfiiahrlstvreadlvlfldqgrliekgs 552 
                   kg++++r ++ +++  ++  + d+ + +  g  v +vg tgagk+tl   l r+ +p  gq+ +dgvd a +  + +r+++a + qda l++ +ir n+    +d +dee+ ++ k a  +d i     +  + v   g++ls gerq l ++ra+l+ a il++deat+++d  t+a ++d+i  + +    + t        + +ahrl t+   d vl ld+g++ e  s
  MMETSP1174-20130828|22771_1 1104 KGHLRIRGLTVQYPSqTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkDATesrlkcsIICVAHRLETIIYYDKVLVLDEGKVAEYDS 1335
                   6888889999999752667899*****************************************************************************96.57889******************999999***************************************************9976654221154422222213558*********************99765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-06    0.0002      16      47 ..     344     375 ..     335     385 .. 0.89
   2 !   52.4   0.0   1.5e-16   9.5e-15      82     217 ..     467     606 ..     462     620 .. 0.83
   3 !   58.4   0.0   2.4e-18   1.5e-16       3     233 ..    1108    1342 ..    1106    1353 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.2e-06
    TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrsl 47 
                  +l  v +ei++n++t+++Gp G+Gks++l +l
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  67899************************986 PP

  == domain 2    score: 52.4 bits;  conditional E-value: 1.5e-16
    TIGR00972  82 kkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiv.eesLkkaalwdevkdklkksalsLsGGqqqrlciaralave.PevlLlDePtsaLDpiatekiee..liqeLkkk..ytivivthnmqqaarvsdktaffl 217
                  k++G v qkp   + si dn+ +g   +  +  +++d+   ++ L    l     +++ + +++LsGGqqqr+++ara   +  ev+LlD+  sa+D+  +e i +  ++  L+k+   t+++vth+++   r  d++ +f 
  MMETSP1174-20130828|22771_1 467 KELGYVPQKPWILNRSIRDNIILGSAFHWNRYWDVIDACClRHDLDI--LPAGDMTEIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQrnATVILVTHQIDLCLRGVDRILLFG 606
                  689*************************9999999998761455554..55555688999*****************9875527***************99999542244445554449******************99985 PP

  == domain 3    score: 58.4 bits;  conditional E-value: 2.4e-18
    TIGR00972    3 evknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkk....kyt.......ivivthnmqqaarvsdktaffleGelveegeteqifek 233 
                   +++ l++ y +++  al+d+nl i+  + ++++G +G+Gkstl  +l rl + v     +G+++l+g d     l    +r+   ++ q  + f  +i  n+      ++ +  ++l +i++ + k   l  ++  ++++ + +Ls G +q lc++ral    ++l++De t+++Dp + + i+++i+ +++    + t       i+ v h ++  +   dk+ ++ eG++ e+++++ +++ 
  MMETSP1174-20130828|22771_1 1108 RIRGLTVQYPSQTkpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPV-----RGQMFLDGVDCAI--LGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASL-KIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkDATesrlkcsIICVAHRLETII-YYDKVLVLDEGKVAEYDSPAALLTP 1342
                   677788888654445************************************998.....8*******99865..688999*********************9765554443333333.56666666667789999******************************************999999888876654111122233333339******98765.679**************99998874 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.004      0.24      17      48 ..     344     375 ..     334     385 .. 0.85
   2 !   39.9   0.0   1.1e-12   6.7e-11     140     217 ..     523     603 ..     468     617 .. 0.85
   3 !   74.4   0.0   3.3e-23     2e-21       2     232 ..    1107    1338 ..    1106    1345 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.004
    TIGR02315  17 alknvnleikkGelvaviGlsGaGkstllrsi 48 
                  +l +v +ei +  ++ v+G+ G+Gks +l ++
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  688999*********************99865 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.1e-12
    TIGR02315 140 akradqLsGGqqqRvaiaRalaqq.pklilaDEPiasLDpksskqvmd..llkrinkekgitvivnlHqvdlakkyadriv 217
                   +r  +LsGGqqqRv++aRa  ++ +++ l D+ ++++D + s+ + +  +l  + k+++ tvi+  Hq+dl  +  dri+
  MMETSP1174-20130828|22771_1 523 GERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLRGVDRIL 603
                  47899***************9987478*******************9733577899999****************999997 PP

  == domain 3    score: 74.4 bits;  conditional E-value: 3.3e-23
    TIGR02315    2 levenlskvypngkq.alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekg.........itvivnlHqvdlakkyadrivglkageivfdgasse 232 
                   l+++ l+++yp++++ al ++nl i +G  v+v+G+ GaGkstl  ++ rl e+ +g+++l+g + + l    l+ +r+  ++i q+  l e  t+ +n+  ++   +s  ++++  ++ ++ +  + lL    la+      ++Ls G++q + ++Ral++ +k+++ DE +as+Dp++  ++ d+++ i++  +          ++i+  H+++    y d+++ l +g++  ++++++
  MMETSP1174-20130828|22771_1 1107 LRIRGLTVQYPSQTKpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILG---LHDVRQAFAIIPQDATLFEG-TIRSNL-DAF-DDHSD-EEIWASLKIAQLADKIGLLP-GKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVNkdatesrlkCSIICVAHRLETII-YYDKVLVLDEGKVAEYDSPAA 1338
                   79999*****9886549************************************************99665...6778889*******998875.455554.433.22222.33555555555555555554.467777778889*********************************************99875431111222225799999***9875.779*********986655554 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00012    0.0071      15      52 ..     344     381 ..     335     387 .. 0.91
   2 !   36.2   0.0   1.5e-11   9.3e-10      74     209 ..     466     609 ..     436     627 .. 0.77
   3 !   64.5   0.0   3.3e-20     2e-18       2     213 ..    1108    1333 ..    1107    1341 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 0.00012
    TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkv 52 
                   l  v++e++++ +++v+G  g Gk+++l al+g l++
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  68899*****************************9876 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.5e-11
    TIGR03410  74 kaGiayvpqGreifpkltveenlelglealkkkekkipeei.....yelFPvlkem.lkRrgGdLsGGqqqqlaiaRaLvte.PklllLDePteGiqPsiikeiek..vikelakekdlaillveqvldfaleladrylvlerGe 209
                  ++ ++yvpq   i+ + ++++n+ lg + + ++  ++++       +++ P+ +      rg +LsGGqqq +++aRa   +  +++lLD+    +   + + i +  ++  l+k+++ +++lv +++d++l+  dr+l++ + e
  MMETSP1174-20130828|22771_1 466 SKELGYVPQKPWILNR-SIRDNIILGSAFHWNRYWDVIDACclrhdLDILPAGDMTeIGERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLRGVDRILLFGKEE 609
                  4559*****8888876.9*********99999865555543222227889985433145789****************9876269******************9542367899********************999999876544 PP

  == domain 3    score: 64.5 bits;  conditional E-value: 3.3e-20
    TIGR03410    2 evenlevaYge..sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkip..eeiyelFPvlkemlkRrgG.dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelake.........kdlaillveqvldfaleladrylvlerGevvae 213 
                   +++ l+v+Y +    +l+d++l ++ g  v v+Gr g+Gk+tl  al  ll+  +G++ l+g d   l   + v++  a +pq  ++f   t++ nl    ++++++   + ki   ++   l P   + + R gG +Ls G +q l ++RaL+   k+l++De t  + P+  + i+++i+ +a++          + +i+ v + l+      d++lvl++G+v + 
  MMETSP1174-20130828|22771_1 1108 RIRGLTVQYPSqtKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGL-HDVRQAFAIIPQDATLFEG-TIRSNLDAFDDHSDEEiwaSLKIAqlADKIGLLPGKLAAEVRAGGsNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSvnkdatesrLKCSIICVAHRLETIIY-YDKVLVLDEGKVAEY 1333
                   6777888885411458************************************************988765.5699*********999975.9*****99888887777764444312455678898888888988858*********************************855555555554443211111111146789999999997775.799999999999865 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.074       4.6      19      48 ..     343     372 ..     335     380 .. 0.86
   2 !   31.1   0.0   4.2e-10   2.6e-08     139     216 ..     527     607 ..     516     622 .. 0.86
   3 !   71.7   0.0   1.8e-22   1.1e-20      17     228 ..    1120    1339 ..    1111    1349 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.074
    TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstli 48 
                   +l  v + +p   i  v+g  g+gks+++
  MMETSP1174-20130828|22771_1 343 PTLAAVRVEIPSNAITCVVGPCGSGKSSFL 372
                  5788999********************876 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 4.2e-10
    TIGR02314 139 snlsggqkqrvaiaralase.pkvllcdeatsaldpattqsile..llkeinrrlgltillithemdvvkricdevavidk 216
                  +nlsggq+qrv++ara   +   v+l d+  sa+d   +++i +  +l  + ++ + t++l+th++d+  r  d++ + +k
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLRGVDRILLFGK 607
                  7***************8765279**************999997644677888999************99998888877665 PP

  == domain 3    score: 71.7 bits;  conditional E-value: 1.8e-22
    TIGR02314   17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkeki..krkvtellalvgl.....sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkei....nr.....rlgltillithemdvvkricdevavidkgeliekgtvsei 228 
                   +  al +++l +p g+ +gv+g +gagkstl   +  l +p  g++++dg+d + l    l + r+   +i q   l+   t+  n+     +++++ e+i    k+++l   +gl     +    +  snls g++q + ++ral    k+l+ deat+++dpat   i + ++ i    n+     rl+ +i+ ++h ++ +    d+v v+d+g++ e ++ + +
  MMETSP1174-20130828|22771_1 1120 TKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILG---LHDVRQAFAIIPQDATLFE-GTIRSNLD---AFDDHSDEEIwaSLKIAQLADKIGLlpgklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIaqsvNKdatesRLKCSIICVAHRLETII-YYDKVLVLDEGKVAEYDSPAAL 1339
                   5569*******************************99999**************996...6667888999999988775.57777775...36777777773345788888888862211144556789*************************************988777666552111433333378899*********986.579***********99986655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.23        14      12      36 ..     348     372 ..     341     379 .. 0.85
   2 !   38.3   0.0     3e-12   1.8e-10     111     203 ..     511     605 ..     456     611 .. 0.78
   3 !   59.3   0.0   1.2e-18   7.6e-17       7     218 ..    1122    1340 ..    1118    1347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.23
    TIGR01186  12 vdleieeGeiiviiGlsGsGkstlv 36 
                  v +ei    i +++G+ GsGks+ +
  MMETSP1174-20130828|22771_1 348 VRVEIPSNAITCVVGPCGSGKSSFL 372
                  678899999*************876 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 3e-12
    TIGR01186 111 lealklvdleeyedryPdelsGGmqqrvGlaralaa.ePdlllmdeafsaldPlirdelqde..lvklqkklqktivfithdldealrlgdrivil 203
                  l+ l   d+ e  +r   +lsGG+qqrv lara      +++l+d+ +sa+d  + + + +   l  l+k+ + t++++th +d  lr  dri ++
  MMETSP1174-20130828|22771_1 511 LDILPAGDMTEIGER-GTNLSGGQQQRVSLARACYRhGVEVFLLDDVLSAVDAHVSEAIWNKciLGLLRKQRNATVILVTHQIDLCLRGVDRILLF 605
                  566666666666555.568**************8751579******************998733456899999********************986 PP

  == domain 3    score: 59.3 bits;  conditional E-value: 1.2e-18
    TIGR01186    7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk...ideqerkekalealklv.dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqk.........tivfithdldealrlgdrivilkaGeivqvGtPdeil 218 
                    ++ d++l i  G  + ++G +G+Gkstl   l rl+eP +G++++dG+d a +   ++    r+  a++ q+ +lf   ti  n++   +  +   ++  +  + a +   l   l   + +   +ls G +q + + ral    ++l+mdea +++dP +   +qd +  + + ++k         +i+ ++h l+ ++   d++ +l +G++    +P  +l
  MMETSP1174-20130828|22771_1 1122 PALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDV----RQAFAIIPQDATLFE-GTIRSNLDAFDDHSDeeiWASLKIAQLADKIGLLPgKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVNKdatesrlkcSIICVAHRLE-TIIYYDKVLVLDEGKVAEYDSPAALL 1340
                   57889999******************************************999988877....889999999999995.69999998655543311133333333333322222134555667789******************************************9998877766544333333469******95.66678***********9998887766 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.022       1.3      16      49 ..     344     377 ..     336     384 .. 0.83
   2 !   20.0   0.2   1.3e-06   8.3e-05     128     196 ..     524     595 ..     509     613 .. 0.80
   3 !   71.5   0.0   2.4e-22   1.5e-20       2     223 ..    1107    1343 ..    1106    1351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.022
    TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltr 49 
                  +l  v +++++ +++ ++Gp G+Gks  +s l +
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  68899*********************98876544 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.3e-06
    TIGR03864 128 ekvreLnGGhrrrveiarall.hePklLLlDeatvGLDiesraalvee.v.relvreeglsvLWathlvdev 196
                  e+  +L+GG+++rv +ara   h  ++ LlD+    +D++  +a+ ++ +   l ++++ +v+  th +d  
  MMETSP1174-20130828|22771_1 524 ERGTNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNKcIlGLLRKQRNATVILVTHQIDLC 595
                  66789**************864999***************999997752414556677899******99954 PP

  == domain 3    score: 71.5 bits;  conditional E-value: 2.4e-22
    TIGR03864    2 leveglsfaygk..rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlgla.eraeekvr....eLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvr.......ee..glsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaea 223 
                   l ++gl+ +y +  + al d++l +++g+ v ++G  GaGkstL s l rL+e  +g++ + G+d      + +++ + ++ q+ tl  + +++ nl  + + h   +  a+ +i+++ +++gl   + +++vr    +L+ G+r+ + + rall   k+L++Deat+ +D+++ a +++++r +++       e+  + s++   h ++ +   d+++vl++Gkv+   ++a+l +  
  MMETSP1174-20130828|22771_1 1107 LRIRGLTVQYPSqtKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQaFAIIPQDATL-FEGTIRSNLDAFDD-HSDEEIWASLKIAQLADKIGLLpGKLAAEVRaggsNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatESrlKCSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALLTPL 1343
                   6788888888652267**************************************************988776666615666666666.789*******9976.8889999************97526777788733446**********************************99998888876654222111133225699************************9998888887655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00054     0.033      15      49 ..     344     378 ..     334     385 .. 0.86
   2 !   34.4   0.0   5.7e-11   3.5e-09     115     205 ..     514     606 ..     455     622 .. 0.75
   3 !   51.0   0.0   4.6e-16   2.8e-14      14     218 ..    1122    1339 ..    1108    1346 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00054
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGl 49 
                  +l  v +e+++  +++++Gp GsGks++l ++ G 
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGE 378
                  578899***********************998875 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 5.7e-11
    TIGR00968 115 lelvqleklgdrypsqlsGGqrqrvalaralave.pqvllldepfgaldakvrkel..rawlrklhdevkvttvfvthdqeealevadrivvle 205
                  l   +++++g+r  ++lsGGq+qrv+lara   +  +v+lld+ ++a+da+v + +  +  l  l ++ + t ++vth+ +  l   dri ++ 
  MMETSP1174-20130828|22771_1 514 LPAGDMTEIGERG-TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIwnKCILGLLRKQRNATVILVTHQIDLCLRGVDRILLFG 606
                  4444667777774.67**************8654279*****************984456789999999**********999999999998764 PP

  == domain 3    score: 51.0 bits;  conditional E-value: 4.6e-16
    TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGf..vfqhyalfkhltvrdni.afGleirkkdkakikakveellelvql..eklg...drypsqlsGGqrqrvalaralavepqvllldepfg....aldakvrkelrawlrklhd.....evkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218 
                    al d++l ++ G  v+++G +G+Gkstl  ++  l +p  G+++l+G d + + ++d +  f  + q+ +lf+  t+r n+ af  +    ++     k+ +l + ++l   kl+       s+ls G+rq + ++ral    ++l++de  +    a da +++ +r   + + +     ++k + + v+h   e++   d++ vl++Gk+ + +s++ +
  MMETSP1174-20130828|22771_1 1122 PALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFaiIPQDATLFE-GTIRSNLdAFDDHSD--EEIWASLKIAQLADKIGLlpGKLAaevRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATAsvdpATDAIIQDTIRGIAQSVNKdatesRLKCSIICVAHR-LETIIYYDKVLVLDEGKVAEYDSPAAL 1339
                   4899************************************************9999886655521557777886.599999856765444..344444556666665555222444110455799**************************9983333457889999998777665411111456666777775.5677789****************9876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0058      0.36      19      52 ..     344     377 ..     333     383 .. 0.85
   2 !   45.2   0.0   2.6e-14   1.6e-12     134     207 ..     528     604 ..     517     610 .. 0.87
   3 !   43.1   0.0   1.1e-13   6.6e-12       6     222 ..    1108    1339 ..    1103    1345 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0058
    TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                  +l+ + +++  + + c++GP G Gk+++L ++ G
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  6889999*********************998876 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.6e-14
    TIGR03265 134 qlsGGqqqrvaLaralal.sPglLLLDePlsaLDakvrekLree..lkklqrklgvttimvthdqeealslaDrivv 207
                   lsGGqqqrv+Lara      +++LLD+ lsa+Da+v e + +   l  l+++ + t i+vth+ +  l   Dri  
  MMETSP1174-20130828|22771_1 528 NLSGGQQQRVSLARACYRhGVEVFLLDDVLSAVDAHVSEAIWNKciLGLLRKQRNATVILVTHQIDLCLRGVDRILL 604
                  79*************8751579******************977633566888999***************9**9976 PP

  == domain 3    score: 43.1 bits;  conditional E-value: 1.1e-13
    TIGR03265    6 sieeiekefe..aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrl..ppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvgls.....gseekyPgqlsGGqqqrvaLaralalsPglLLLDePls....aLDakvrekLreelkklqr.....klgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                   +i+ ++ ++   +  al+d++l +  g  v ++G  G Gk+tL  ++  L ++ +G+++l+g d + l     ++ + i+ q  +Lf   t+++n++  + ++  ++  ++ ++++l + +gl         +   + ls G +q + ++ral    ++L++De  +    a Da +++ +r   +++ +     +l+   i v+h   e +   D++ v+++gk+  + +P+ +
  MMETSP1174-20130828|22771_1 1108 RIRGLTVQYPsqTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILglHDVRQAFAIIPQDATLFEG-TIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLLpgklaAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATAsvdpATDAIIQDTIRGIAQSVNKdatesRLKCSIICVAHRL-ETIIYYDKVLVLDEGKVAEYDSPAAL 1339
                   5555555554215569**********************************************99876611566789***********65.9****985.45555567778889********98522111334566789**************************9872333557888888887665554333333899********76.678889***************99865 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.1e-06   0.00025      17      54 ..     345     382 ..     335     392 .. 0.91
   2 !   22.0   0.0   2.8e-07   1.7e-05      91     210 ..     482     605 ..     472     611 .. 0.74
   3 !   56.1   0.9   1.1e-17   6.9e-16      11     227 ..    1118    1342 ..    1106    1347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.1e-06
    TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapd 54 
                  +  v v+ P+ a+t ++GP GsGks +l+ l G l++d
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTD 382
                  67899**************************9999876 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 2.8e-07
    TIGR03873  91 svrdvvalGriPhrslfaadsdedaevvdr...alarvelssladrdlstlsGGerqrvhlaralaqe.PklllldePtnhldvsaqle.....llalvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                  s+rd ++lG   h  ++      da   ++   +l + +++++ +r  + lsGG++qrv lara  ++  +++lld+    +d +   +     +l+l+r++   ++tv++  h ++l  + +d+++++
  MMETSP1174-20130828|22771_1 482 SIRDNIILGSAFHWNRYWDVI--DACCLRHdldILPAGDMTEIGERG-TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAiwnkcILGLLRKQ--RNATVILVTHQIDLCLRGVDRILLF 605
                  677777777777766665443..444444311156677888888887.57**************8766268******9999996544331123379999999..999*****************99986 PP

  == domain 3    score: 56.1 bits;  conditional E-value: 1.1e-17
    TIGR03873   11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdra.larvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela..........aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227 
                    ++++ ++d+++  P+G+  g++G  G+Gkstl + l  ll+p +G++ l+g+d   l      +  a++ qd++        +  a+       ++a+     a+++d++ l   +l++      s ls Gerq   ++ral +  k+l++de t  +d ++   +   +r +a            +  ++   h l+  + + d+v+vld+G+v+   +pa +ltp
  MMETSP1174-20130828|22771_1 1118 SQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASLK--IAQLADKIgLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAqsvnkdatesRLKCSIICVAHRLET-IIYYDKVLVLDEGKVAEYDSPAALLTP 1342
                   4567899***********************************************8888888888889******9876655555667888888899999766..6677776534445555555566799********************************9999888888888888889998876566778888899986.6688*********************98 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.54        33      25      46 ..     356     377 ..     338     384 .. 0.81
   2 !   38.6   0.0     3e-12   1.8e-10     127     202 ..     527     605 ..     519     612 .. 0.87
   3 !   54.4   0.0   4.3e-17   2.6e-15      15     209 ..    1125    1332 ..    1111    1335 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.54
    TIGR01277  25 ervailGesGaGkstllnliaG 46 
                   +  ++G+ G+Gks++l+ + G
  MMETSP1174-20130828|22771_1 356 AITCVVGPCGSGKSSFLSALLG 377
                  56789***********997766 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 3e-12
    TIGR01277 127 eelsGGqrqrvalar.clvrekpillldepfsaldpklreeml..alvkkladekkltlllvthslsdaaaiasqvvvv 202
                   +lsGGq+qrv+lar c+ +   ++lld+ +sa+d ++ e +   +++  l ++++ t++lvth+++   + ++++++ 
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARaCYRHGVEVFLLDDVLSAVDAHVSEAIWnkCILGLLRKQRNATVILVTHQIDLCLRGVDRILLF 605
                  57*************66666789***************999863257788999**************999999999875 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 4.3e-17
    TIGR01277   15 lefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGi..adyle...rlpeelsGGqrqrvalarclvrekpillldepfsaldpk...lreemlalvkkladek......kltlllvthslsdaaaiasqvvvvedGkikv 209 
                     ++l +  G rv ++G +GaGkstl + +  +lep++G++ ++++d   +++   ++ ++++ q+  lf   t+r n+   ++     +     k+ ++a ++G+  +++ +       +ls G+rq + ++r l+r   il++de  +++dp+   + ++ +  +++++++       k +++ v+h+l+ ++   ++v+v+++Gk++ 
  MMETSP1174-20130828|22771_1 1125 TDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCaiLGLHDVRQAFAIIPQDATLFEG-TIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLlpGKLAAevrAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPAtdaIIQDTIRGIAQSVNKDatesrlKCSIICVAHRLETII-YYDKVLVLDEGKVAE 1332
                   346777899***********************************998622678899**************75.9****974.44444555666789*********8543444311044679*******************************99722245666665655544321111225679999**998765.689*********986 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00065      0.04      16      51 ..     342     377 ..     330     383 .. 0.86
   2 !   24.3   0.0   7.7e-08   4.7e-06     137     210 ..     527     604 ..     517     609 .. 0.82
   3 !   57.8   0.0   4.3e-18   2.7e-16       3     184 ..    1108    1289 ..    1106    1330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00065
    TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilg 51 
                   ++l  v v+i+   ++ +vG+ G+Gks++l  +lg
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  468999*************************98876 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 7.7e-08
    TIGR00960 137 vqlsgGeqqrvaiaravv.nkPallladePtgnlddelsrdile..lleev.nraGttvlvathdenlveskrkrvlt 210
                  ++lsgG+qqrv++ara   +  +++l d+  + +d ++s+ i +  +l  + +++  tv++ th+++l  +   r+l 
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNkcILGLLrKQRNATVILVTHQIDLCLRGVDRILL 604
                  68**************9725578****************999764444444245789***********9888888875 PP

  == domain 3    score: 57.8 bits;  conditional E-value: 4.3e-18
    TIGR00960    3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdka.....kalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev 184 
                   +++ ++ +y++ +++al ++++ i+ G  v +vG +GaGkstl   +    +p +G++ + g d + l  ++   +r+   i+ qd  l+ + t+  n+   +     +   ++ ++ +  +k+Gl   +     +a   +ls Ge+q ++++ra+++  ++l+ de t+ +d+++   i + ++ +
  MMETSP1174-20130828|22771_1 1108 RIRGLTVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHD---VRQAFAIIPQDATLF-EGTIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLLPGKlaaevRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGI 1289
                   6677899**********************************************************9997665...6**********9876.5677777542.222222333344556666799998654411111445679*********************************9987666655444 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.021       1.3       9      39 ..     345     375 ..     339     382 .. 0.86
   2 !   20.1   0.0   1.1e-06   6.7e-05     123     188 ..     527     596 ..     499     610 .. 0.81
   3 !   68.1   0.0   2.7e-21   1.6e-19       7     256 ..    1122    1386 ..    1117    1403 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.021
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmL 39 
                  +  v ++++ + +  ++GP G GK+  ++ L
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  567899*******************988766 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.1e-06
    TIGR01188 123 ktysgGmrrrlelaasliaq.PevlfLDEPtiGLDprtrraiwd..lieelkke.gvtilltthyleead 188
                   ++sgG+++r++la++   +  ev+ LD+  + +D++  +aiw+  ++  l+k+ + t++l th+++   
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQrNATVILVTHQIDLCL 596
                  568***********998866269999*****************8423445566579********998655 PP

  == domain 3    score: 68.1 bits;  conditional E-value: 2.7e-21
    TIGR01188    7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv.vrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvel...keaadkkvk..tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke..........gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaeltesll..eleavevdsd 256 
                    A+ ++nl ++ g+ +g++G  GAGK+t+ + L  ll+P  G+ ++ G D  +   ++vR+  +++pq+a++ e  t r nl  + +  + +   a  ++++l + + l   k aa+ +++  ++s G r+ l ++++l+   ++l +DE t  +Dp t ++i d i+ + ++          + +i+  +h le +  + d+v ++d+Gk++  d+p  L + ++ +  ++e+++    k+++++l+ +l +     +l++++++ +
  MMETSP1174-20130828|22771_1 1122 PALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCaILGLHDVRQAFAIIPQDATLFEG-TIRSNLDAFDDHSDEE-IWASLKIAQLADKIGLlpgKLAAEVRAGgsNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSvnkdatesrlKCSIICVAHRLETI-IYYDKVLVLDEGKVAEYDSPAALLTPLETTEETTEPQQQGGDKHKAERLFLSLCSARGpdTLKRLRLAAN 1386
                   6999**********************************************7356778***************997.899****999988754.45678999999999983322344444433379****************************************99755432211011012345688889999766.788********************99887777666666665555555555555544432234444444444 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0028      0.17      15      53 ..     342     380 ..     334     384 .. 0.86
   2 !   27.5   0.0   7.7e-09   4.7e-07     135     208 ..     526     603 ..     513     609 .. 0.80
   3 !   57.3   0.0   5.8e-18   3.5e-16       4     181 ..    1109    1287 ..    1107    1314 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0028
    TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaek 53 
                    +L  v ++i    ++ ++G+ G+Gk+++l  llg ++
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  567999*************************98887765 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 7.7e-09
    TIGR02673 135 peelsgGeqqRvaiaRaivnk.PelllaDePtGnlDdelserild..llkel.nkrGttvivathdeelvervkkrvl 208
                   ++lsgG qqRv++aRa  ++  e++l D+    +D+++se i +  +l  l ++r +tvi++th+ +l+ r   r+l
  MMETSP1174-20130828|22771_1 526 GTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLrKQRNATVILVTHQIDLCLRGVDRIL 603
                  578**************9876269***************9987543344433146789**********9988777766 PP

  == domain 3    score: 57.3 bits;  conditional E-value: 5.8e-18
    TIGR02673    4 lekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgl.....edkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllk 181 
                   ++ ++ +y+ ++  aL+d++l i +g  + ++G+ GaGk+tl   l+  ++p rG++ ++g d a l       +R+  +++ qD  l+ + t+  n+  a+  + ++e   + ++ ++ +++gl     +  ++a  ++ls Ge+q   + Ra+++  ++l+ De t  +D+++ + i d ++
  MMETSP1174-20130828|22771_1 1109 IRGLTVQYPsQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGL---HDVRQAFAIIPQDATLF-EGTIRSNLD-AFDDHSDEEIWASLKIAQLADKIGLlpgklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIR 1287
                   677899999345579************************************************999975...567**********9987.579999986.4555566666677899999999997222113455667789*********************************99887766555 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.11       6.6      25      61 ..     346     382 ..     338     398 .. 0.87
   2 !   42.2   0.0   1.8e-13   1.1e-11     131     213 ..     522     605 ..     504     617 .. 0.85
   3 !   45.1   0.1   2.4e-14   1.5e-12       8     227 ..    1106    1339 ..    1103    1345 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.11
    TIGR03258  25 ddlsleieaGellallGksGsGkttllravaGfvkad 61 
                    + +ei +  +  ++G+ GsGk++ l a+ G +++d
  MMETSP1174-20130828|22771_1 346 AAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTD 382
                  5667889999999****************99988876 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 1.8e-13
    TIGR03258 131 aaarlpaqlsGGqqqrvalaralvvr.pdvllldeplsaldaqlrasvvee.lkalhrelpeltvlyvthdrdealvladkillm 213
                   ++r  ++lsGGqqqrv+lara   +  +v+lld+ lsa+da++ +++ ++ +  l r+  + tv+ vth+ d  l   d+ill+
  MMETSP1174-20130828|22771_1 522 IGER-GTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKcILGLLRKQRNATVILVTHQIDLCLRGVDRILLF 605
                  4444.468**************9765269****************9997653889***************************986 PP

  == domain 3    score: 45.1 bits;  conditional E-value: 2.4e-14
    TIGR03258    8 Gvvleslrvaygarv..vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy..krnlallvqnyalfphlkveenvafGlrarkqskalia.ervadalklv..qlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsald....aqlrasvveelkalhrelpe....ltvlyvthdrdealvladkillmkeGslialGetral 227 
                    +++  l+v+y +++   l dl l i +G  + ++G++G+Gk+tl  a+  ++++  G++ + + d + l  +  ++++a++ q+ +lf      +  af   +     a ++  ++ad + l+  +l+       ++ls G +q + ++ral    ++l++de  +++d    a ++ +++   +++ ++  e     ++++v+h r e+++  dk+l++ eG+++++  + al
  MMETSP1174-20130828|22771_1 1106 HLRIRGLTVQYPSQTkpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHdvRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIWASLKiAQLADKIGLLpgKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDpatdAIIQDTIRGIAQSVNKDATEsrlkCSIICVAH-RLETIIYYDKVLVLDEGKVAEYDSPAAL 1339
                   5789999****8776448************************************************98877663267899999**99998765555569998887776665431345555555422455555555689**************************9986651111556555555444444444332222689****9.78999****************9999887 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0072      0.44      16      46 ..     348     378 ..     338     384 .. 0.86
   2 !   25.5   0.0   2.4e-08   1.5e-06     129     205 ..     526     605 ..     479     623 .. 0.90
   3 !   56.9   0.0   6.9e-18   4.2e-16      15     222 ..    1126    1342 ..    1113    1357 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0072
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGL 46 
                  v +e+p++ +t + G  GsGk+s++ ++ G 
  MMETSP1174-20130828|22771_1 348 VRVEIPSNAITCVVGPCGSGKSSFLSALLGE 378
                  7899********************9998775 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2.4e-08
    TIGR02142 129 pgkLsGGekqRvaigRAlLss.PeLLlmDePLaaLDekrkkeil..PyLerlsaelkiPilyvsHsldevarladrvvvl 205
                   ++LsGG +qRv+++RA   +  e+ l+D+ L+a+D +  + i     L  l+++ +  +++v H++d  +r  dr++++
  MMETSP1174-20130828|22771_1 526 GTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWnkCILGLLRKQRNATVILVTHQIDLCLRGVDRILLF 605
                  468**************9987269***************9999733579999************************9986 PP

  == domain 3    score: 56.9 bits;  conditional E-value: 6.9e-18
    TIGR02142   15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.rriseekvielLgi.....ehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyL....erlsae.....lkiPilyvsHsldevarladrvvvledGrvkaagkleevlas 222 
                   d++l +p   ++++ Gr G+Gk++l  ++  L+ p +g++ ldg    d +  + l   + +++++ q+A+LF   ++r+nL     +++ e    ++ +++ + +g+        ++   ++Ls Ge+q   ++RAlL   ++L+mDe  a++D    + i   +    ++++++     lk  i+ v+H l+ +    d+v+vl++G+v+   +++++l+ 
  MMETSP1174-20130828|22771_1 1126 DLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGV---DCA-ILGLHDVRQAFAIIPQDATLFEG-TIRSNLDAFDDHSDEEIwASLKIAQLADKIGLlpgklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIrgiaQSVNKDatesrLKCSIICVAHRLETIIY-YDKVLVLDEGKVAEYDSPAALLTP 1342
                   67778888799*********************************7...444.4788999**************85.8*****87666665543134455555555554220004446667789******************************99776555544440000555432222227889********98875.7***********999988887765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0         1        64      21      59 ..     339     377 ..     322     383 .. 0.82
   2 !   28.9   0.0   2.6e-09   1.6e-07     147     226 ..     525     607 ..     511     627 .. 0.84
   3 !   60.0   0.1   8.4e-19   5.1e-17      20     237 ..    1117    1338 ..    1106    1347 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 1
    TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllG 59 
                  ++  + l  v +++ +     ++G  G+Gks +   llG
  MMETSP1174-20130828|22771_1 339 HKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  5556789999999*999999***********98777777 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 2.6e-09
    TIGR02769 147 lPrqlsGGqlqriniaralave.Pklivldeavsnldlvlqasile..llkklkqefGlaylfithdlrlvqkfaqrvlvlde 226
                  + ++lsGGq qr+++ara   +  ++ +ld+ +s +d +   +i +  +l  l+++   +++++th + l  +  +r+l++ +
  MMETSP1174-20130828|22771_1 525 RGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLRGVDRILLFGK 607
                  5679**************9776257889************999987335889999999***************9999998754 PP

  == domain 3    score: 60.0 bits;  conditional E-value: 8.4e-19
    TIGR02769   20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldese..rkariaellelvelrsevl....dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkq.........efGlaylfithdlrlvqkfaqrvlvldeGqiveeikvae 237 
                    +q k+ l++++l +  G  v+++Gr+GaGkstla  l  l +P +G+++  G+d a l     + +r+   ++ qd++         +  i+  l  + + ++ e     +ia+l ++++l + +l    +   ++ls G  q ++++ral    k++++dea +++d    a i + ++ + q         +   +++ ++h l+ + ++ ++vlvldeG++ e  + a 
  MMETSP1174-20130828|22771_1 1117 PSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGL---HDVRQAFAIIPQDATL-------FEGTIRSNLDAFDDHSDEEiwASLKIAQLADKIGLLPGKLaaevRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatesRLKCSIICVAHRLETIIYY-DKVLVLDEGKVAEYDSPAA 1338
                   67999***************************************************99965...56888999*****864.......34455555555555544441156799999999999766541111556789*******************************988887776666655541111111113346778899999998765.99*********99776555 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.028       1.7      13      47 ..     344     379 ..     334     391 .. 0.82
   2 !   27.5   0.0   6.9e-09   4.2e-07     133     197 ..     527     595 ..     466     604 .. 0.83
   3 !   55.5   0.0   1.8e-17   1.1e-15       8     181 ..    1118    1290 ..    1110    1325 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.028
    TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLn.ilgll 47 
                   l  ++++i +  ++ +vG  GsGKs +L  +lg l
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSaLLGEL 379
                  577889999999**************9996245655 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 6.9e-09
    TIGR03608 133 yelsgGekqRvalarillke.selilADEPtgsLDkknreevle..llkel.keegktiiivtHdpeva 197
                   +lsgG++qRv+lar+  ++  e+ l D+  +++D++ +e++ +  +l  l k+++ t+i+vtH+  + 
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLrKQRNATVILVTHQIDLC 595
                  58**************9986479****************999864344444256799*******98764 PP

  == domain 3    score: 55.5 bits;  conditional E-value: 1.8e-17
    TIGR03608    8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkki....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelk 181 
                    ++k  l++l+l i  G  v +vG+ G+GKstl   l +l ++ +g+++l+g + a        + +r+ ++ + q+ +L e  t+++nl+  +  +  ++   + k+ ++ +k+gl   kl  ++     +ls Ge+q + + r+ll+ +++++ DE t+s+D+ + +++ + ++ ++
  MMETSP1174-20130828|22771_1 1118 SQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCA----ILGLHDVRQAFAIIPQDATLFE-GTIRSNLDA-FDDHSDEEIWASLKIAQLADKIGLlPGKLAAEVraggSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIA 1290
                   567889**********************************99************55....4455567999**********98.69******6.777777777888899999*****9877777777444479**********************************9999887765543 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0014     0.083      16      55 ..     340     380 ..     332     392 .. 0.83
   2 !   26.4   0.0   1.5e-08   9.2e-07     135     207 ..     522     597 ..     513     609 .. 0.84
   3 !   19.5   0.0     2e-06   0.00012      18      70 ..    1121    1173 ..    1107    1183 .. 0.86
   4 !   28.5   0.0   3.5e-09   2.2e-07     131     220 ..    1233    1331 ..    1216    1332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0014
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllh.llggld 55 
                  ++  +l  v +ei +  ++ +vG  GsGks +l  llg l+
  MMETSP1174-20130828|22771_1 340 KTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSaLLGELQ 380
                  555689999**********************9963667665 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.5e-08
    TIGR02211 135 inkkpselsGGerqrvaiaralvnkP.klvladePtgnldkktakkife..lllelnkekntallvvthdlelakk 207
                  i ++ ++lsGG++qrv++ara   +  ++ l d+  + +d++ +++i++  +l  l+k++n ++++vth+++l  +
  MMETSP1174-20130828|22771_1 522 IGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLR 597
                  667899***************98775278899***************96447888999999*********999644 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2e-06
    TIGR02211   18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkels 70  
                      l++++l i  g  v++vG +G+Gkstl   l  l +p  G+++l+G +  
  MMETSP1174-20130828|22771_1 1121 KPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCA 1173
                   457999*******************************************8865 PP

  == domain 4    score: 28.5 bits;  conditional E-value: 3.5e-09
    TIGR02211  131 lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelll....elnke.....kntallvvthdlelakkldrvlelkdgkla 220 
                   l   +    s+ls Gerq   ++ral+   k+++ de t+ +d +t  +i + ++     +nk+     ++ +++ v+h le +   d+vl l +gk+a
  MMETSP1174-20130828|22771_1 1233 LAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRgiaqSVNKDatesrLKCSIICVAHRLETIIYYDKVLVLDEGKVA 1331
                   5566677789***********************************9999988776111145544222225789***********************986 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015     0.091       5      43 ..     342     380 ..     339     384 .. 0.90
   2 !   17.0   0.0   1.1e-05   0.00065     116     189 ..     518     594 ..     507     595 .. 0.79
   3 !   54.8   0.1   2.9e-17   1.8e-15       6     175 ..    1122    1291 ..    1116    1295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0015
    TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllr 43 
                  +  l  + +++     ++++G+ G+Gks +l+ l G l+
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  557899999***************************998 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.1e-05
    TIGR01166 116 disgleerpthllsgGekkrvaiagavalr.pdvllldePtagldpaGaeqlle..ilrklree.Gktvvisthdvdl 189
                  d++++ er t  lsgG+++rv++a a   +  +v+lld+  + +d++  e + +  il  lr++   tv++ th +dl
  MMETSP1174-20130828|22771_1 518 DMTEIGERGT-NLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQrNATVILVTHQIDL 594
                  5666666655.69***********998765269***************999975436777776525699********9 PP

  == domain 3    score: 54.8 bits;  conditional E-value: 2.9e-17
    TIGR01166    6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedv.afgplnlGlseaeverrvrea..laavdis....gleerp.thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre 175 
                    +l++lnl +  g++++++G+ GaGkstl + l  ll P  G++ ldG   d    gl ++r+  a++ qd+   lf  ++ +++ af       s++e+ + ++ a   +++++       e r+  + ls Ge++ + ++ a+   +++l++de ta++dpa    + +++r++ +
  MMETSP1174-20130828|22771_1 1122 PALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGV--DCAILGLHDVRQAFAIIPQDA--TLFEGTIRSNLdAFDDH----SDEEIWASLKIAqlADKIGLLpgklAAEVRAgGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQ 1291
                   48**********************************************5..66679************9987..69*****9998566653....55555554443311444554321112233332589*******************************************99876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.035       2.1      20      55 ..     344     380 ..     334     384 .. 0.83
   2 !   31.0   0.0   6.1e-10   3.8e-08     134     211 ..     521     602 ..     465     610 .. 0.74
   3 !   42.2   0.0   2.4e-13   1.5e-11      15     219 ..    1118    1330 ..    1106    1331 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.035
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttllt.ligglr 55 
                   l  + +ei ++ i  + Gp GsGk  +l+ l+g l+
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSaLLGELQ 380
                  57788999******************99864778776 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 6.1e-10
    TIGR02982 134 rldykpedlsgGqkqrvaiaralvarP.klvladePtaaldkksgrevve..llqklareqgttillvthdnri.ldvadri 211
                  ++  + ++lsgGq+qrv++ara   +  ++ l d+  +a+d++ ++++ +  +l  l +++++t++lvth   + l   dri
  MMETSP1174-20130828|22771_1 521 EIGERGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLcLRGVDRI 602
                  5667889***************9988538999***************98755788899999*********854314555666 PP

  == domain 3    score: 42.2 bits;  conditional E-value: 2.4e-13
    TIGR02982   15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek.lsakeakakaeel..leavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar.........eqgttillvthdnrildvadrivkmedGkl 219 
                   ++ k  l d+nl i pg  v + G +G+Gk tl + +  l +   G++ + g +        l +vr+   +i q   l+e  t + n+    + +++ + a+ + a+ ++   l    l  ++    ++ls G +q + ++ral    k+++ de ta++d  +   + + ++ +a+            ++i+ v+h    +   d+++ +++Gk+
  MMETSP1174-20130828|22771_1 1118 SQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAI---LGLHDVRQAFAIIPQDATLFEG-TIRSNLDAFDDHSDEeIWASLKIAQLADKigLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatesRLKCSIICVAHRLETIIYYDKVLVLDEGKV 1330
                   3467789****************************9999999999*99887776554...46899***************97.899999877776665233333333333330222334667999999**************************************999999999999999999987778********99999999******99997 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.97        59       3      33 ..     347     377 ..     345     384 .. 0.82
   2 !   34.9   0.0     4e-11   2.5e-09      93     189 ..     505     606 ..     473     613 .. 0.73
   3 !   40.2   0.0     1e-12   6.2e-11       1     194 [.    1124    1331 ..    1124    1341 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.97
    TIGR01184   3 dvdleikkgefislighsgcgkstllnliag 33 
                   v +ei    + +++g  g gks++l  + g
  MMETSP1174-20130828|22771_1 347 AVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  577888889999***********99976554 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 4e-11
    TIGR01184  93 eiveehielvglreaad..krpeqlsggmkqrvaiaralsir.pklllldepfgaldaltreelqek.llk.iveearvtvlmvthdvdealllsdrvvmlt 189
                    ++++++++   + ++   r ++lsgg +qrv++ara      +++lld+ + a+da   e + +k +l  + +++++tv++vth++d  l   dr++++ 
  MMETSP1174-20130828|22771_1 505 CCLRHDLDILPAGDMTEigERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKcILGlLRKQRNATVILVTHQIDLCLRGVDRILLFG 606
                  555666666544333321167899*************97654279*****************99988344524567789******************99875 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 1e-12
    TIGR01184    1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwl......tvrenialavdavlrdlskserreiveehielvglreaadkrp..eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkive.......ea..rvtvlmvthdvdealllsdrvvmltngpaa 194 
                   l d++l i  g  + ++g +g gkstl   +  l +p  g + l+g +    g +   v q ++++p        t+r n+    d+  +++  s + + + ++i l+  + aa+ r   ++ls g +q + ++ral    k+l++de   ++d  t   +q+ +  i++       e+  +++++ v+h + e+++  d+v++l +g  a
  MMETSP1174-20130828|22771_1 1124 LTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHD--VRQAFAIIPQDatlfegTIRSNLDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAEVRAggSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatESrlKCSIICVAHRL-ETIIYYDKVLVLDEGKVA 1331
                   5789********************************************99999764..5566666664321222288999998889999999999999999*******99999998873369******************************9999999999998888762222222232246678888987.567788999999988766 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1         3   1.9e+02       2      20 ..     361     379 ..     360     383 .. 0.82
   2 !   42.9   0.1   1.1e-13     7e-12      84     175 ..     513     606 ..     507     621 .. 0.85
   3 !   34.3   0.0   4.7e-11   2.9e-09       2     188 ..    1140    1339 ..    1139    1345 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 3
    TIGR01187   2 LGpsGsGkttlLrllaGle 20 
                  +Gp GsGk+  L  l G  
  MMETSP1174-20130828|22771_1 361 VGPCGSGKSSFLSALLGEL 379
                  7***********9998855 PP

  == domain 2    score: 42.9 bits;  conditional E-value: 1.1e-13
    TIGR01187  84 aLelvqleefakrkpsqlsGGqrqrvalaravvk.kPkiLLlDeplsaLDkkLrdqmqle..lkalqeklGitvvlvthDqeealtmsdriavlr 175
                  +L   +++e+++r  ++lsGGq+qrv+lara      +++LlD+ lsa+D ++ + + +   l  l+++   tv+lvth  +  l   dri ++ 
  MMETSP1174-20130828|22771_1 513 ILPAGDMTEIGER-GTNLSGGQQQRVSLARACYRhGVEVFLLDDVLSAVDAHVSEAIWNKciLGLLRKQRNATVILVTHQIDLCLRGVDRILLFG 606
                  5556678888876.589**************9861579*****************9977633788999**********************98875 PP

  == domain 3    score: 34.3 bits;  conditional E-value: 4.7e-11
    TIGR01187    2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenv.afgLkmrkvpkaeik.ervkeaLelv..qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqe.........klGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188 
                   +G +G+Gk+tl   l  l e+  G++ ldg+d +    +  ++   ++ q+  Lf   t+  n+ af  + +++  a +k ++  + + l   +l    +   s+ls G rq + ++ra+    kiL++De+ +++D      +q  ++ + +         +l   ++ v+h   e +   d++ vl +Gk+a  ++p  +
  MMETSP1174-20130828|22771_1 1140 VGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHdvRQAFAIIPQDATLFE-GTIRSNLdAFDDHSDEEIWASLKiAQLADKIGLLpgKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatesRLKCSIICVAHR-LETIIYYDKVLVLDEGKVAEYDSPAAL 1339
                   7999****************************877655422667888999999996.68999987999988887766655367888888873355555566679******************************9998888888877776644111122222788999****95.6889999*************9999765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.22        13      21      47 ..     350     376 ..     338     382 .. 0.78
   2 !   39.0   0.0   1.8e-12   1.1e-10     145     222 ..     527     607 ..     511     619 .. 0.88
   3 !    7.9   0.0    0.0055      0.34      15      61 ..    1123    1169 ..    1107    1199 .. 0.83
   4 !   23.4   0.0     1e-07   6.4e-06     136     236 ..    1233    1341 ..    1211    1352 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.22
    TIGR03005  21 levaaGekvaliGpsGsGkstilrilm 47 
                  +e+ +     ++Gp GsGks+ l  l+
  MMETSP1174-20130828|22771_1 350 VEIPSNAITCVVGPCGSGKSSFLSALL 376
                  555555566789*********998775 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 1.8e-12
    TIGR03005 145 aqlsGGqkqrvaiaralalr.pkvllfdevtsaldpelveevln..vlrrlasetdltmllvthemgfarefadrvlffdk 222
                  ++lsGGq+qrv++ara   +   v+l+d+v sa+d ++ e + n  +l  l ++++ t++lvth++ +     dr+l+f k
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRKQRNATVILVTHQIDLCLRGVDRILLFGK 607
                  68**************8765269******************99855677889999************************87 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0055
    TIGR03005   15 vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikveg 61  
                    l +l+l + +G +v ++G +G+Gkst+   l+ l +   G++ ++g
  MMETSP1174-20130828|22771_1 1123 ALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDG 1169
                   688999**********************9999887655567776665 PP

  == domain 4    score: 23.4 bits;  conditional E-value: 1e-07
    TIGR03005  136 ladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrl.......asetdl..tmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236 
                   la+   a  ++ls G++q + ++ral    k+l++de+t+++dp     + + +r +       a+e  l  +++ v+h++     + d+vl +d Gk++e   p  ++ 
  MMETSP1174-20130828|22771_1 1233 LAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIaqsvnkdATESRLkcSIICVAHRLETI-IYYDKVLVLDEGKVAEYDSPAALLT 1341
                   57777788899*********************************7655444455444110111155555422577888888865.467*************999988764 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021       1.3      16      52 ..     345     381 ..     337     424 .. 0.81
   2 !   19.3   0.0   2.5e-06   0.00015     126     186 ..     527     591 ..     499     602 .. 0.80
   3 !   40.0   0.0   1.1e-12   6.8e-11      11     172 ..    1119    1288 ..    1107    1294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.021
    TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkp 52 
                  l+++ +e+ +  +  v+Gp G+GK++ L  l G l++
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  67788999999999*************9988886554 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.5e-06
    TIGR01189 126 aqLsAGqkrRlalarLll.skaplWiLDEPttalDkegvell.aellaaHl..argGivllathq 186
                  ++Ls Gq++R++lar        +++LD+ + a+D++  e + ++ +   l  +r+ +v+l thq
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIwNKCILGLLrkQRNATVILVTHQ 591
                  579************86615679************998665515555554422677889999997 PP

  == domain 3    score: 40.0 bits;  conditional E-value: 1.1e-12
    TIGR01189   11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq...seqktveealekvgLsg...ledlpv..aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172 
                   +++  l++l++ + +G  + v+G+ G+GK+tL   l  Ll+p  G++ l++ + a    +  ++   +  +d+   e +++ nL+ + + ++    +++++ +  +k+gL     ++++ +  ++Ls G ++ l ++r ll  a++ i+DE t+++D ++ ++++++++ 
  MMETSP1174-20130828|22771_1 1119 QTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDeeiWASLKIAQLADKIGLLPgklAAEVRAggSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRG 1288
                   56778999********************************************99998877778888888899999999*********99888333234588999999998531112333332268*************************************99998875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.83        51       8      30 ..     357     379 ..     350     384 .. 0.83
   2 !   38.3   0.0   4.1e-12   2.5e-10      44     188 ..     462     607 ..     444     617 .. 0.82
   3 !   22.0   0.5   3.9e-07   2.4e-05       5     201 ..    1133    1341 ..    1129    1351 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.83
    TIGR03771   8 llgllGpnGaGkttllrailgli 30 
                  + +++Gp G+Gk+++l a+lg +
  MMETSP1174-20130828|22771_1 357 ITCVVGPCGSGKSSFLSALLGEL 379
                  56789***************965 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 4.1e-12
    TIGR03771  44 srkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadale...rvklteladrpvGelsGGqrqrvlvaralavk.pslllldepftGldlpsqellve..lfeela.gegtailmtthdlaeavatcdrvvllng 188
                  +++g +e+Gyvpq+    w    ++++ ++ G a +  + r   + d    ++ l+     ++te+ +r   +lsGGq+qrv +ara   +  +++lld+ ++ +d    e + +  ++  l  + + +++++th++   +  +dr++l+ +
  MMETSP1174-20130828|22771_1 462 AESGSKELGYVPQK---PWILNRSIRDNIILGSAFH--WNRYWDVIDACCLRHDLDilpAGDMTEIGERG-TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLRkQRNATVILVTHQIDLCLRGVDRILLFGK 607
                  57899********9...699************9865..88888999999998877622256899999998.58**************8765268*****************98764355566514567899*****************9976 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 3.9e-07
    TIGR03771    5 kGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGrag.liGllrr.pkkadfaavada..lervkl..telad..rpvG.elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelage....gt......ailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201 
                   +G  +g++G  GaGk+tl  a++ l+++ +G++ ++g       + +G    r  fa    i    t+++G  + ++  +   + ++ +a+ + a   +++ l   +la   r+ G +ls G+rq + ++ral    ++l++de  + +d  +   + + ++ +a+      t      +i+ ++h l   +   + +vl +g+v    +p+ l  
  MMETSP1174-20130828|22771_1 1133 PGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGV----DCAILGLHDVRQAFAI---IPQDATLFEGTIRsNLDAFDDhSDEEIWASLKIAqlADKIGLlpGKLAAevRAGGsNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSvnkdATesrlkcSIICVAHRLETIIYYDKVLVLDEGKVAEYDSPAALLT 1341
                   68889********************************6....4556788888888885...555677888866524666665155555666554421466666332454322444448********************************998777777666665531111212223336888888887777666666666677766677777665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013      0.77       5      39 ..     348     382 ..     345     387 .. 0.87
   2 !   15.7   0.0   2.5e-05    0.0016     125     194 ..     528     600 ..     523     609 .. 0.85
   3 !   39.2   0.0   1.8e-12   1.1e-10       3     215 ..    1125    1341 ..    1123    1352 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.013
    TIGR02770   5 vnlslkrgkvlalvGesGsGksltalailglldke 39 
                  v +++  + ++ +vG  GsGks   +a+lg l+++
  MMETSP1174-20130828|22771_1 348 VRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTD 382
                  667788999********************988865 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.5e-05
    TIGR02770 125 elsGGmlqRvmialalllea.plliaDePttdlDvvvqaevLkl..leelrekrglgillithDlgvvaelad 194
                  +lsGG  qRv +a a   +   +++ D+  +++D+ v   + ++  l  lr++r+ +++l+th +    +  d
  MMETSP1174-20130828|22771_1 528 NLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNKciLGLLRKQRNATVILVTHQIDLCLRGVD 600
                  79***********9998875268899***************985448899*************9887666555 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 1.8e-12
    TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeev..lkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrg.........lgillithDlgvvaeladevavmekGkivergtvkelfq 215 
                   +d+nl +  g  +++vG  G+Gks+ a+a+  ll+     ++G++ ldg + a l l +  +++a+i q+  + f+   ti+++ l++   ++  +  a  +i++  +++gL  ++    ++    +ls G  q + +  all  a +li De t+ +D ++ a + ++++ + ++ +          +i+ ++h l  + +  d+v+v+++Gk+ e  ++  l++
  MMETSP1174-20130828|22771_1 1125 TDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLE----PVRGQMFLDGVDCAILGLHDvrQAFAIIPQDA-TLFEG--TIRSN-LDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAaeVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVNkdatesrlkCSIICVAHRLETIIYY-DKVLVLDEGKVAEYDSPAALLT 1341
                   799*******************************9....69*********999885544114566666654.45543..44443.345555555555555566666667777644433113455689************************************99999999997753211122222269**********9875.9************998877664 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.6   4.7e+02     156     220 ..     150     211 ..     143     212 .. 0.80
   2 ?    1.2   0.0      0.49        30      43      70 ..     348     375 ..     342     381 .. 0.84
   3 !   31.2   0.0   3.8e-10   2.3e-08     163     236 ..     527     603 ..     513     611 .. 0.85
   4 ?    5.1   0.0     0.032       1.9      42      84 ..    1126    1168 ..    1120    1182 .. 0.87
   5 !   21.6   0.0   3.2e-07     2e-05     163     252 ..    1242    1339 ..    1232    1346 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 7.6
    TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivf 220
                  +W++++   l G    rvGl   + ++  i+ m     a    + +k   el++l +klk  i f
  MMETSP1174-20130828|22771_1 150 KWHQRR---LEGFRDLRVGLLHMVVLGIRIIKMFAWEPAYKCKLTEKRDAELVHLSAKLKYGIAF 211
                  555554...667788899999999999999999877778888888888999*****999998877 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.49
    TIGR03415  43 asldveeGeilvlmGlsGsGkssllrav 70 
                  + +++    i+ ++G  GsGkss+l a+
  MMETSP1174-20130828|22771_1 348 VRVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  5667778889999***********9886 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 3.8e-10
    TIGR03415 163 gelsGGmqqrvGlara.fateadillmdePfsaldPliraklqde.lle.lqkklkktivfvshdldealklGnria 236
                   +lsGG qqrv lara +  + +++l+d+ +sa+d  + + + +  +l  l+k+ + t+++v+h +d  l+  +ri 
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARAcYRHGVEVFLLDDVLSAVDAHVSEAIWNKcILGlLRKQRNATVILVTHQIDLCLRGVDRIL 603
                  68*************9457889****************9999877244426777899**********9999777775 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.032
    TIGR03415   42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvk 84  
                   d +l +  G  + ++G +G+Gks+l  a+ +l   +rG++ + 
  MMETSP1174-20130828|22771_1 1126 DLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLD 1168
                   667888888888899*****************9999**99875 PP

  == domain 5    score: 21.6 bits;  conditional E-value: 3.2e-07
    TIGR03415  163 gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellel.........qkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252 
                    +ls G +q + ++ra+  +a+il+mde  +++dP   a +qd +  +          ++lk  i+ v+h l+  +   +++ ++++G++  +++p  +
  MMETSP1174-20130828|22771_1 1242 SNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIaqsvnkdatESRLKCSIICVAHRLETII-YYDKVLVLDEGKVAEYDSPAAL 1339
                   57999**************************************997662111111114578889********7655.5689999999*99999999765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.9   3.6e+02      33      55 ..     358     380 ..     349     384 .. 0.79
   2 !   20.7   0.1   5.9e-07   3.6e-05     132     208 ..     525     605 ..     517     647 .. 0.84
   3 !   41.1   0.1   3.6e-13   2.2e-11      19     183 ..    1123    1291 ..    1109    1347 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 5.9
    TIGR01288  33 fgllgpngagkstiarlvlglis 55 
                    ++gp g+gks+    +lg  +
  MMETSP1174-20130828|22771_1 358 TCVVGPCGSGKSSFLSALLGELQ 380
                  5689********99999998665 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 5.9e-07
    TIGR01288 132 rvadlsggmkrrltlaralind.pqllildepttgldpharhliwer.lrslla..rgktilltthlmeeaerlcdrlcvl 208
                  r ++lsgg ++r++lara      ++++ld+  + +d h    iw++ +  ll   r  t++l th ++ + r +dr+ ++
  MMETSP1174-20130828|22771_1 525 RGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKcILGLLRkqRNATVILVTHQIDLCLRGVDRILLF 605
                  5679**************986526899******************983456775225679**************9998765 PP

  == domain 3    score: 41.1 bits;  conditional E-value: 3.6e-13
    TIGR01288   19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllef.....arleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrslla 183 
                    + dl + i  g   g++g  gagkst+a  ++ l  p +g++ + g +         r +  ++pq  +l  e t+r nl  f  +   +       i +l +       +l +   +  ++ls g ++ l ++ral+   ++li+de t+ +dp +  +i + +r +  
  MMETSP1174-20130828|22771_1 1123 ALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAIlGLHDVRQAFAIIPQDATL-FEGTIRSNLDAFDDHSDEEIWAS-LKIAQLADKigllpGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQ 1291
                   5689999***********************************9766655443145678999******7776.799*********98755433221.223333332000013444444555699*****************************************9998743 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.1   1.3e+02     354     389 ..     342     377 ..     334     381 .. 0.86
   2 !    7.3   0.0    0.0053      0.33     467     529 ..     526     591 ..     511     607 .. 0.79
   3 !   49.4   0.3     9e-16   5.5e-14     354     505 ..    1121    1279 ..     819    1331 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.1
    TIGR01194 354 gfalGpidlriasGelvyivGenGcGkstliklllG 389
                  + +l  + + i s  +  +vG  G Gks+++  llG
  MMETSP1174-20130828|22771_1 342 PPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  556888999999*****************9999888 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0053
    TIGR01194 467 ttdlstGqrkrlalvna.yleerpvllldewaadqdpafkrvfyeellpdl..krrGktilvishd 529
                   t+ls Gq++r++l  a y     v+lld+  +  d       +++ +  l  k+r  t+++++h+
  MMETSP1174-20130828|22771_1 526 GTNLSGGQQQRVSLARAcYRHGVEVFLLDDVLSAVDAHVSEAIWNKCILGLlrKQRNATVILVTHQ 591
                  599***********9874777899*******99999999887777765555234567899999997 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 9e-16
    TIGR01194  354 gfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqp..dekkqasldqattylsrleledkvkvedlnyst.....ttdlstGqrkrlalvnayleerpvllldewaadqdpafk 505 
                     al  ++l i  G  v +vG  G Gkstl+  l  l  p  G+++ldG   +     d r+ f+ +  d  lf+  +    d  ++ s ++    l+  +l+dk+ +  ++ ++      ++ls+G+r+ l +  a l    +l++de +a  dpa  
  MMETSP1174-20130828|22771_1 1121 KPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVRQAFAIIPQDATLFEGTIRSnlDAFDDHSDEEIWASLKIAQLADKIGLLPGKLAAevragGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATD 1279
                   458999************************************************************************863356688899999999**********99988876422222579*********************************965 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.2        75      16      48 ..     345     377 ..     335     383 .. 0.77
   2 !   12.7   0.0   0.00012    0.0071     168     240 ..     528     603 ..     514     621 .. 0.67
   3 !   42.2   0.0   1.4e-13   8.6e-12     304     524 ..    1128    1348 ..    1107    1355 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 1.2
    TIGR03269  16 lknisleleeGevlGilGksGaGksvllhllrG 48 
                  l  + +e+    +  ++G  G+Gks +l  l G
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  667788888888888888888888888877766 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 0.00012
    TIGR03269 168 dlsGGekqrvvlarqlakepl.llladeptGtldpktaklvhealk..eavkeedislvltshwpeviedlsdkai 240
                  +lsGG++qrv lar   ++ + ++l d+   ++d + ++ + +  +     k+++ +++l +h  ++    +d+ +
  MMETSP1174-20130828|22771_1 528 NLSGGQQQRVSLARACYRHGVeVFLLDDVLSAVDAHVSEAIWNKCIlgLLRKQRNATVILVTHQIDLCLRGVDRIL 603
                  6778888888888877777654777777777777777777766433003346667777777776665554444444 PP

  == domain 3    score: 42.2 bits;  conditional E-value: 1.4e-13
    TIGR03269  304 slevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpde.lakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesi.......lkaree..leetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiveelteeek 524 
                   +l +  +   G+vG +GaGk+tl+  l  +lep +G++ +    + vd +  g      +++ + ++ q+ +l+   t+  nl +a   +  +e  a  k       +G+   k    +    ++ls+Ger  + +++ l++  +i+i+de t ++dp t   ++++i        k  +e  l+ + + v+h ++ +    d++ ++ +Gk+ +  +p+ +++ l   e 
  MMETSP1174-20130828|22771_1 1128 NLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFL----DGVDCAILG---LHDVRQAFAIIPQDATLFE-GTIRSNL-DAFDDHSDEEiWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIrgiaqsvNKDATEsrLKCSIICVAHRLETIIY-YDKVLVLDEGKVAEYDSPAALLTPLETTEE 1348
                   5555666668**************************9876....567776666...556889999*********6.5777777.4555555555157778888888999887776666678899**********************************998766554411111105544332367788999999998865.799999999**9999999999988744433 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00091     0.056      20      58 ..     341     379 ..     332     384 .. 0.85
   2 !   11.1   0.0    0.0007     0.043     149     207 ..     528     590 ..     524     599 .. 0.71
   3 !   17.1   0.0     1e-05   0.00063      20      67 ..    1120    1167 ..    1112    1184 .. 0.88
   4 !   13.5   0.0   0.00012    0.0076     149     195 ..    1243    1289 ..    1235    1297 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00091
    TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslyanY 58 
                  + p+l+ v++e+ +  ++++ G+ G+Gks++l +l ++ 
  MMETSP1174-20130828|22771_1 341 TPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGEL 379
                  557899999************************998765 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.0007
    TIGR02324 149 tfsGGekqRvniaraliad.rPiLLLdePtasLdaanrkvvve.....likeakargaaligifh 207
                    sGG +qRv +ara   +   + LLd+  +++da  ++++ +     l+++  +r a++i + h
  MMETSP1174-20130828|22771_1 528 NLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcilgLLRK--QRNATVILVTH 590
                  57*************987427899*********9988766543221114444..44455555555 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1e-05
    TIGR02324   20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67  
                   + p+l++++l +  G  v + G++GaGkstl  +l++   p  g++++
  MMETSP1174-20130828|22771_1 1120 TKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFL 1167
                   57899********************************99999998876 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 0.00012
    TIGR02324  149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea 195 
                     s Ge+q + ++ral+    iL++de tas+d a+ +++ + i+ +
  MMETSP1174-20130828|22771_1 1243 NLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGI 1289
                   5799********************************99998888765 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.042       2.6     473     503 ..     349     385 ..     344     402 .. 0.74
   2 !   29.2   0.0   1.1e-09     7e-08     515     638 ..     466     590 ..     456     596 .. 0.76
   3 !   19.9   0.0     7e-07   4.3e-05     469     624 ..    1124    1284 ..    1107    1330 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.042
    TIGR00954 473 sfevksGnhlLiiGPnGcGKsslf.Rilgel.....W 503
                   +e++s     ++GP G GKss+   +lgel     W
  MMETSP1174-20130828|22771_1 349 RVEIPSNAITCVVGPCGSGKSSFLsALLGELqtdvdW 385
                  57888888899***********651678888555555 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.1e-09
    TIGR00954 515 egklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkd.LeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfy.HkPkfavLDEctsAvsvdvEdklyela......kevgitllsvsh 638
                  +++l yvPq+P++ ++++Rd ii   + +  +  ++ d+  L + L+ +         g +  + +    LsgG++qR+++AR  y H  +  +LD+  sAv   v +++++++      k+ + t++ v+h
  MMETSP1174-20130828|22771_1 466 SKELGYVPQKPWILNRSIRDNIILGSAFHWNRYWDVIDACcLRHDLDILP-------AGDMTEIGERGTNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNKCilgllrKQRNATVILVTH 590
                  56789******************998877777778777641333333333.......3344567777889*************9986778899*******************98444444555566666666 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 7e-07
    TIGR00954  469 ieeLsfevksGnhlLiiGPnGcGKsslfRilgel.WPvyg.........gll.tkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg..wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye 624 
                   + +L++ ++ G+ + ++G  G GKs l   l  l  Pv+g           l   + ++++  +Pq   +  gt+R  +       d ++ + sd+++ + L+  +L d +    g     v+     Ls Ge+q + m R +    k  ++DE+t+ v +  +  + +
  MMETSP1174-20130828|22771_1 1124 LTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLlEPVRGqmfldgvdcAILgLHDVRQAFAIIPQDATLFEGTIRSNL-------DAFD-DHSDEEIWASLKIAQLADKIGLLPGklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQD 1284
                   679*********************9998777664169*99999**9998444145667777789************765.......3333.568999999999999987554433333456999999*****************************9998765544443 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.47        29      18      54 ..     345     381 ..     337     384 .. 0.82
   2 !    7.7   0.0    0.0078      0.48     131     191 ..     526     591 ..     466     607 .. 0.82
   3 !   44.4   0.0   4.9e-14     3e-12       6     184 ..    1110    1298 ..    1106    1346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.47
    TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylka 54 
                  l  v  e+    i+  +GP G+Gks+ +  l g l++
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  566778888999*************999888777665 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0078
    TIGR03522 131 igalskGyrqrvGlakall.hdPkvlildePttGldPnqlveire..vikei..akdktvilsthi 191
                   ++ls G +qrv la+a   h  +v++ld+  + +d     +i +  ++  +   ++ tvil th 
  MMETSP1174-20130828|22771_1 526 GTNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNkcILGLLrkQRNATVILVTHQ 591
                  5689************9754999********99999887766654223333411345688888885 PP

  == domain 3    score: 44.4 bits;  conditional E-value: 4.9e-14
    TIGR03522    6 sdlsklygkqk..aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedv.lknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlka.....eqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlve....irevikeiakdkt 184 
                   + l+ +y +q   al ++ + + +G  vG +G  GaGkstl   l   l++  G ++++g d  +    +vr+    +P+   l++     +  +f    +  ++     ++++l +++Gl +     e     ++ls G rq   +++all   k+li+de t+ +dP         ir + +++ kd t
  MMETSP1174-20130828|22771_1 1110 RGLTVQYPSQTkpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCaILGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDD--HSDEEIWASLKIAQLADKIGLLPgklaaEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIiqdtIRGIAQSVNKDAT 1298
                   5566666554323999*********************************************972556789***************9876555555654..444556778899999999998652111156666789*********************************8755500225555555556654 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0017      0.11      14      52 ..     343     381 ..     333     384 .. 0.86
   2 ?   -0.6   0.0         3   1.8e+02     121     193 ..     525     601 ..     511     624 .. 0.66
   3 !   43.6   0.0   9.2e-14   5.7e-12       3     201 ..    1109    1329 ..    1107    1338 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0017
    TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrk 52 
                    ++ v +++++n++  ++Gp G+Gks+ l  l G l+ 
  MMETSP1174-20130828|22771_1 343 PTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQT 381
                  5688999************************99998876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 3
    TIGR03740 121 kakqfslGmkqrlGiaiallnkP.kllildePtnGldPlGiqelre..liksf.pekGitvilsshilsevelladh 193
                  + +++s G +qr+ +a a  ++  ++++ld+    +d    + + +  ++  + +++  tvil +h +      +d 
  MMETSP1174-20130828|22771_1 525 RGTNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWNkcILGLLrKQRNATVILVTHQIDLCLRGVDR 601
                  45678999999999999999885389999999999998766665332244444244567888888876655555555 PP

  == domain 3    score: 43.6 bits;  conditional E-value: 9.2e-14
    TIGR03740    3 tknlskkfkkqa..vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkki...GsliesPalyenltarenlkv...rtlllglpesrieevlkivdl.....entekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlG...iqe.lreliksfpekGi......tvilsshilsevelladhiGiiseGk 201 
                   ++ l+ ++  q+  ++ +++l ++  +  g++G  GaGkstl   l  ll++  G++ ldg + +   l+++    ++i + a+  + t r nl     ++  +   + +i ++ ++++l       + +   +++s+G +q l ++ all+  k+li+de t  +dP     iq+ +r + +s++++ +      ++i  +h l  +    d++ ++ eGk
  MMETSP1174-20130828|22771_1 1109 IRGLTVQYPSQTkpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDVrqaFAIIPQDATLFEGTIRSNLDAfddHSDEEIWASLKIAQLADKIGLlpgklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATdaiIQDtIRGIAQSVNKDATesrlkcSIICVAHRLETI-IYYDKVLVLDEGK 1329
                   55666666555433899********************************************99876555555111689988776666666666654221333333444456666655554221115566667789*********************************7544466547888888887765111121444444544333.3345555666665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00066     0.041     340     375 ..     347     382 ..     336     385 .. 0.89
   2 !    8.8   0.0    0.0019      0.12     160     216 ..     527     590 ..     500     602 .. 0.68
   3 !   29.2   0.0   1.3e-09   7.8e-08     334     489 ..    1120    1289 ..    1105    1295 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00066
    TIGR03719 340 dlsfklpkggivGviGpnGaGkstlfklitgkekpd 375
                   + +++p ++i  v+Gp G+Gks ++  + g+ ++d
  MMETSP1174-20130828|22771_1 347 AVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTD 382
                  56789**********************999998876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0019
    TIGR03719 160 eklsGGekrrvalcrlllek.PdlllldePtnhldaesva..Wlekfl....keykGtvvavth 216
                  ++lsGG+++rv+l+r    +  +++lld+    +da   +  W +  l    k+ + tv++vth
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEaiWNKCILgllrKQRNATVILVTH 590
                  6788888888888887765525788888888888876432225444432223456677777777 PP

  == domain 3    score: 29.2 bits;  conditional E-value: 1.3e-09
    TIGR03719  334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.G.et..vklayvdqsrdalddnktvwe.eisdGldllk.lgkvevnsrayvgrfnfk.....G...adqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallef 489 
                    k  + dl++ +p+g+ vGv+G  GaGkstl   +    +p +G++ + G +   + l  v q    + ++ t++e +i   ld ++  ++ e+ +   +++++ k     G   a+ +   ++ls Ger+ + +++ l +g+ +l++de t  +d  t   +++++   
  MMETSP1174-20130828|22771_1 1120 TKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLdGvDCaiLGLHDVRQAFAIIPQDATLFEgTIRSNLDAFDdHSDEEIWASLKIAQLADKigllpGklaAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGI 1289
                   566789***************************************9873222211334556777888999*****9568888888852567788887777776654322222111233344468********************************98887777777655 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.13      19      55 ..     346     382 ..     341     385 .. 0.89
   2 ?    0.6   0.0       1.3        78     139     204 ..     524     594 ..     517     603 .. 0.70
   3 !   38.5   0.0   3.4e-12   2.1e-10       3     220 ..    1107    1330 ..    1105    1336 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0021
    TIGR03411  19 ndlslsveegelrviiGpnGaGkttllDvitGktrpd 55 
                    + +++ ++ + +++Gp G+Gk+ +l ++ G  ++d
  MMETSP1174-20130828|22771_1 346 AAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTD 382
                  667889999*********************9988765 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 1.3
    TIGR03411 139 kkaglLshGqkqwLeigmllvqe.pkllllDePvaGmtdeetektae..llkel..akersvvvvehDmef 204
                  ++ ++Ls Gq+q++ ++    ++  +++llD+  + + ++  e + +  +l  l  +++ +v++v h ++ 
  MMETSP1174-20130828|22771_1 524 ERGTNLSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNkcILGLLrkQRNATVILVTHQIDL 594
                  56789***********9987765279*****9988877665554432114444411445688999998765 PP

  == domain 3    score: 38.5 bits;  conditional E-value: 3.4e-12
    TIGR03411    3 Levedvsvsfdgfk..alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenle.lalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak...........ersvvvvehDmefvrelaekvtvlheGkv 220 
                   L++++++v++ + +  al+dl+l + +g    ++G  GaGk+tl  ++    +p +G+++++g d + l  +++ r+  +   q +++fe  t++ nl+    ++d++++a+l      + +++i   l   +L++++++  ++Ls G++q L ++  l++ +k+l++De +a +  +  + + + ++ +a+           ++s++ v h +e +  + +kv vl eGkv
  MMETSP1174-20130828|22771_1 1107 LRIRGLTVQYPSQTkpALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAILGLHDV-RQAFAIIPQDATLFEG-TIRSNLDaFDDHSDEEIWASLKIA---QLADKIG--LLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdatesrlKCSIICVAHRLETIIYY-DKVLVLDEGKV 1330
                   7899999999765334***********************************************98777776665.44566678******86.99****824567789999999433...3344454..34457899999999*******************************98766655555555444431212333333357999999999999765.57999999998 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.1e-05   0.00065    1056    1131 ..     523     603 ..     467     609 .. 0.82
   2 !   32.2   0.0   4.6e-11   2.8e-09     938    1104 ..    1116    1286 ..    1105    1340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
    TIGR01257 1056 neeaqdlsgglqrklsvaiafv.gdakvvvldeptsgvdpysrrsiwdl....llkyrsgrtiimsthhmdeadllgdria 1131
                    e   +lsgg q+++s+a a       v +ld+  s vd +   +iw+     ll+ +   t+i+ th++d +    dri 
  MMETSP1174-20130828|22771_1  523 GERGTNLSGGQQQRVSLARACYrHGVEVFLLDDVLSAVDAHVSEAIWNKcilgLLRKQRNATVILVTHQIDLCLRGVDRIL 603 
                   577889************98651667999******************843334566677789********98766667775 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 4.6e-11
    TIGR01257  938 fepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtgl.....hhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll 1104
                   +    +pa+  ln+ +       ++g  gagk+t  s l  ll p  g +++ g d     l  vrq++ + pq   lf     ++   f  +   + w  a l++  + +  gl              +ls g ++ l ++ a++  ak++++de t+ vdp +   i d +
  MMETSP1174-20130828|22771_1 1116 YPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVDCAIlGLHDVRQAFAIIPQDATLFEGTIRSNLDAFDDHSDEEIW--ASLKIAQLADKIGLlpgklAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTI 1286
                   4556899*********999999**********************************875389*****************98666655556555544444..44555555555554100005555555679*********************************9988777754 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00044     0.027      15      54 ..     344     383 ..     337     386 .. 0.90
   2 ?    0.6   0.0       1.1        66     145     205 ..     529     593 ..     516     598 .. 0.77
   3 !   33.8   0.0   8.1e-11   4.9e-09       2     226 ..    1108    1333 ..    1107    1347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00044
    TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyev 54 
                   L  + +e+ + ++  ++Gp GsGks   ++l g+ ++ v
  MMETSP1174-20130828|22771_1 344 TLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQTDV 383
                  588999***************************9988766 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 1.1
    TIGR01978 145 fsGGekkrneilqlalle.PklaiLDeiDsGlDvDalkivaeg..vnklree.ekalliithyer 205
                   sGG ++r  + +    +  ++ +LD++ s +D     ++ ++  +  lr++ + +++++th+  
  MMETSP1174-20130828|22771_1 529 LSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDAHVSEAIWNKciLGLLRKQrNATVILVTHQID 593
                  689999999988877655258999*********99999998753256788885667788999865 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 8.1e-11
    TIGR01978    2 kikdlhvsv..edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlD......v.Dalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivks 226 
                   +i+ l+v+   + k+ L++lnl + +G+ + ++G+ G+GkstL+++l      e ++G++ l+g d + l  ++  r+   +  q ++   G      +rs l+a  ++ +ee + ++    +l +k+ ll  + +   R   +  s Ge++   + + +l   k+ i+De+ + +D      + D+++ +a+ vnk ++e +  + ii   +rl   i  d+v vl +G++++ 
  MMETSP1174-20130828|22771_1 1108 RIRGLTVQYpsQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFR--LLEPVRGQMFLDGVDCAILGLHDV-RQAFAIIPQDATLFEG-----TIRSNLDAFDDHSDEE-IWASLKIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMDEATASVDpatdaiIqDTIRGIAQSVNKDATEsRLKCSIICVAHRLETIIYYDKVLVLDEGKVAEY 1333
                   5666666652256899*******************************86..57789**********999999886.5556666777766666.....5899999999665555.6666666889999999999999999999999******9999999999999*******98888755445415889********9888855566677777799999**************975 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.25        15      53      81 ..     357     385 ..     336     414 .. 0.82
   2 !    8.0   0.0    0.0032       0.2     155     225 ..     519     591 ..     509     606 .. 0.78
   3 !   34.4   0.0   3.2e-11   1.9e-09      37     247 ..    1120    1332 ..    1093    1354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.25
    TIGR00955  53 llAvlGsSGaGKtTLlnalafrsekglkv 81 
                  +  v+G+ G+GK+  l+al    +++++ 
  MMETSP1174-20130828|22771_1 357 ITCVVGPCGSGKSSFLSALLGELQTDVDW 385
                  56799**************9999999876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0032
    TIGR00955 155 dtrigvpgrvkglSgGerkRlalaselltdP.ilLfcDEPTsGLDsfsaasvv.kvLkkla..qkgktviltiHQ 225
                   t ig  g    lSgG+++R++la         ++++D+  s  D+  +  +  k + +l   q+  tvil+ HQ
  MMETSP1174-20130828|22771_1 519 MTEIGERG--TNLSGGQQQRVSLARACYRHGvEVFLLDDVLSAVDAHVSEAIWnKCILGLLrkQRNATVILVTHQ 591
                  58899666..59*************998765278999*********99988862445555411455699999999 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 3.2e-11
    TIGR00955   37 ekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek...veakemraisayvqqddlfiptltvrehLm.fsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktv..........iltiHQPsselfelfdkiillaeGrvvy 247 
                   +k  l +   v+ +G+ + v+G  GaGK+TL +al fr  + +++  ++ l+G     ++ + +r+  a + qd  +++  t+r +L  f  h   ++++ ++ k ++  + +  l  + +a+ r g       lS Ger+ l ++  ll   ++L++DE T++ D ++ a +  +++++aq+ +            i++ H     ++  +dk+++l+eG+v+ 
  MMETSP1174-20130828|22771_1 1120 TKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASAL-FRLLEPVRG--QMFLDGVDcaiLGLHDVRQAFAIIPQDATLFE-GTIRSNLDaFDDH--SDEEIWASLKIAQLADKIGLLPGKLAAEVRAGGS----NLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVNKDatesrlkcsiICVAHRLETIIY--YDKVLVLDEGKVAE 1332
                   66677777778999******************999.566777777..78999987222567788888888888776655.4777777513333..2444555555555444444444466889999833....6**********************************9999999******9865434677777777*****9776665..9**********984 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.6   4.7e+02      18      47 ..     346     375 ..     343     383 .. 0.71
   2 !    9.2   0.0    0.0013     0.078     402     479 ..     527     608 ..     518     623 .. 0.80
   3 !   28.6   0.0   1.7e-09     1e-07      15     217 ..    1122    1328 ..    1106    1339 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 7.6
    TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvl 47 
                   ++ +++ +  i  + G  G+Gks+++  l
  MMETSP1174-20130828|22771_1 346 AAVRVEIPSNAITCVVGPCGSGKSSFLSAL 375
                  566677777777788888888888776655 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0013
    TIGR02633 402 arlsGGnqqkavlak.llllnprvlildeptrGvdvGakyeiy.klinqla..qeGvaiivvsselaevlGlsdrvlvigeG 479
                  ++lsGG+qq+  la+ +     +v++ld+    vd      i+ k i  l   q+  ++i+v+ ++   l   dr+l++g+ 
  MMETSP1174-20130828|22771_1 527 TNLSGGQQQRVSLARaCYRHGVEVFLLDDVLSAVDAHVSEAIWnKCILGLLrkQRNATVILVTHQIDLCLRGVDRILLFGKE 608
                  689********999945566789************99999998345554431256788999999999999999999998764 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 1.7e-09
    TIGR02633   15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakel.lrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlka........kgvac..vyishkleevkavsdtisvirdG 217 
                    al +++l + +G  v++ G  GaGkstl   l  +       G+++ +g +    +++d   +  +ii q+ tl +  ++  n+   ++ + +  + +  ++ + a+++ l   kl a+  +   s+l  G++ql+ +++al + +++li+de +as+  +   i+ d ir + +          + c  + ++h+le +    d++ v+ +G
  MMETSP1174-20130828|22771_1 1122 PALTDLNLVIPPGTRVGVVGRTGAGKSTLASALFRLL--EPVRGQMFLDGVDCAILGLHDVR-QAFAIIPQDATLFEG-TIRSNLDAFDDHSDEE-IWASLKIAQLADKIgLLPGKLAAEVRAG-GSNLSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQsvnkdateSRLKCsiICVAHRLETI-IYYDKVLVLDEG 1328
                   489999999*******************998887764..356899*******9999999985.568999***999864.7777876666665555.4444444444444324445565555554.789999**************************99999888888888765431111111133444325556777655.345666666665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       0.8      28      54 ..     356     382 ..     341     395 .. 0.86
   2 ?    6.0   0.0     0.026       1.6     139     202 ..     526     596 ..     514     610 .. 0.64
   3 !   19.9   0.0   1.5e-06   8.9e-05       4     218 ..    1107    1332 ..    1104    1343 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.013
    TIGR02323  28 evlgivGesGsGkstllkalaarllad 54 
                   + ++vG  GsGks++l+al ++l++d
  MMETSP1174-20130828|22771_1 356 AITCVVGPCGSGKSSFLSALLGELQTD 382
                  5779****************9998765 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.026
    TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarll..llrglv.relglaviivth.lavar 202
                   +++sGG qqr+ +ar+   +   vf+ +         v   +    + gl+ ++ + +vi+vth + ++ 
  MMETSP1174-20130828|22771_1 526 GTNLSGGQQQRVSLARACYRHGVEVFLlDDVLSAvdAHVSEAIWnkCILGLLrKQRNATVILVTHqIDLCL 596
                  5789***************9999999864433320222222222233444441456788999999766554 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.5e-06
    TIGR02323    4 levselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvre.........lglaviivthlavarllaqrllvmkqGrvve 218 
                   l++++l+ +y s++      +++ + pG  +g+vG +G+Gkstl +al   l + +G++  +  +    +l l + ++       + ++ q++      +r ++ a  + ++  +     +  +++++   l      + r   +++s G +q l ++r+l+   ++++m e t  +  + +a +   +rg+ +          l+ ++i v+h   + +  +++lv+ +G+v e
  MMETSP1174-20130828|22771_1 1107 LRIRGLTVQYPSQTKPAltdLNLvIPPGTRVGVVGRTGAGKSTLASALFRLLEPVRGQMFLDGVD--CAILGLHDVRQA------FAIIPQDATlfegTIRSNLDAFDDHSDEEIWASL-KIAQLADKIGLLPGKLAAEVRAGGSNLSVGERQLLCMSRALLRGAKILIMdEATASVdPATDAIIQdTIRGIAQSvnkdatesrLKCSIICVAHRLETIIYYDKVLVLDEGKVAE 1332
                   778888888887764332257776789******************************99887666..677777765554......5566665543443588899998888887776644.6788888888776555555599999999999999999999999999999988888875555555556667665431111222225567888888444556677899999999887 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00019     0.012     623     655 ..     345     377 ..     336     396 .. 0.88
   2 !   11.5   0.0   0.00021     0.013     821     909 ..     521     611 ..     511     613 .. 0.81
   3 ?    4.4   0.0     0.029       1.8     620     654 ..    1121    1154 ..    1103    1251 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindiLv 655
                  l  + v+ip + +t++ G+ gsGks+++  +L 
  MMETSP1174-20130828|22771_1 345 LAAVRVEIPSNAITCVVGPCGSGKSSFLSALLG 377
                  67899*********************9988775 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00021
    TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGL..hfdDikkLlevlqrlvdkGn.tvvviehnldv.iksaDyiidlGPeGGe 909
                  ++G+  t LsGG  qrv La+   +   g  +++lD+    +  h+ +      +l  l ++ n tv+++ h +d+ ++  D i+ +G e G+
  MMETSP1174-20130828|22771_1 521 EIGERGTNLSGGQQQRVSLARACYR--HGVEVFLLDDVLSAVdaHVSEAIWNKCILGLLRKQRNaTVILVTHQIDLcLRGVDRILLFGKEEGA 611
                  68999****************9876..5889*****9766552277776666678899988776489999*****835788999999998886 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.029
    TIGR00630  620 ennlkdidvsiplglltvitGvsgsGkstLindiL 654 
                   +  l d+++ ip g+ + + G  g+GkstL    L
  MMETSP1174-20130828|22771_1 1121 KPALTDLNLVIPPGTRVGVVGRTGAGKSTLASA-L 1154
                   556788888888888888888888888888543.4 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.16        10      68     112 ..     336     380 ..     318     385 .. 0.79
   2 ?   -3.0   0.0       3.3     2e+02     210     242 ..     529     562 ..     522     596 .. 0.76
   3 ?    3.8   0.0      0.03       1.8     768     809 ..    1113    1154 ..    1039    1162 .. 0.83
   4 !   13.2   0.0   4.2e-05    0.0026     210     289 ..    1244    1330 ..    1241    1338 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.16
    TIGR00956  68 ekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiaskte 112
                  ++++k+   l  v   i +  ++ v+G+ gsG+s++L ++ ++++
  MMETSP1174-20130828|22771_1 336 KNDHKTPPTLAAVRVEIPSNAITCVVGPCGSGKSSFLSALLGELQ 380
                  4555566667777777888899****************9988765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.3
    TIGR00956 210 vsGGerkRvsiaevlvak.akiqcwDnatrGLDs 242
                  +sGG+++Rvs+a ++  +  ++ ++D++   +D+
  MMETSP1174-20130828|22771_1 529 LSGGQQQRVSLARACYRHgVEVFLLDDVLSAVDA 562
                  6999999999998876541456667776666665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.03
    TIGR00956  768 evkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvL 809 
                   +v++ ++++  L +++ ++ PG+   ++G  GAGk tL  +L
  MMETSP1174-20130828|22771_1 1113 TVQYPSQTKPALTDLNLVIPPGTRVGVVGRTGAGKSTLASAL 1154
                   566666777777777777778888888888888888876665 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 4.2e-05
    TIGR00956  210 vsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqas.......qdayelFdkvvvlyeGkq 289 
                   +s Ger+ + ++ +l+ +aki+++D+at  +D at   +  +++ +a+ +++ a+ + +++s        ++   +dkv+vl+eGk 
  MMETSP1174-20130828|22771_1 1244 LSVGERQLLCMSRALLRGAKILIMDEATASVDPATDAIIQDTIRGIAQSVNKDATESRLKCSiicvahrLETIIYYDKVLVLDEGKV 1330
                   588**********************************9999*********99999999999844332222455569*********86 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0092      0.56     180     204 ..     357     381 ..     335     383 .. 0.79
   2 ?    5.7   0.0     0.026       1.6     181     203 ..    1137    1159 ..    1119    1167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0092
    TIGR03819 180 allvsGgtGsGkttLLsalLalvae 204
                     v+G  GsGk + LsalL+++++
  MMETSP1174-20130828|22771_1 357 ITCVVGPCGSGKSSFLSALLGELQT 381
                  45689****************9875 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.026
    TIGR03819  181 llvsGgtGsGkttLLsalLalva 203 
                   + v+G tG+Gk tL sal  l++
  MMETSP1174-20130828|22771_1 1137 VGVVGRTGAGKSTLASALFRLLE 1159
                   5699*************987765 PP

>> TIGR02524  dot_icm_DotB: Dot/Icm secretion system ATPase DotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.015      0.95     130     166 ..     351     387 ..     340     398 .. 0.84
   2 ?    3.7   0.0      0.11       6.5     129     158 ..    1129    1158 ..    1106    1163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.015
    TIGR02524 130 iapqegvvyvtgatgsgkstllaaiirelieasdsnr 166
                    p + +  v g  gsgks++l+a++ el    d  r
  MMETSP1174-20130828|22771_1 351 EIPSNAITCVVGPCGSGKSSFLSALLGELQTDVDWPR 387
                  569999**********************998877666 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.11
    TIGR02524  129 aiapqegvvyvtgatgsgkstllaaiirel 158 
                    + p    v v g tg+gkstl +a+ r l
  MMETSP1174-20130828|22771_1 1129 LVIPPGTRVGVVGRTGAGKSTLASALFRLL 1158
                   456666678899**********99999865 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.57        35     146     169 ..     352     375 ..     348     384 .. 0.87
   2 ?   -2.8   0.0       8.1     5e+02      12      38 ..     983    1009 ..     974    1024 .. 0.78
   3 ?    7.5   0.0    0.0059      0.36     151     172 ..    1137    1157 ..    1114    1165 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.57
    TIGR02525 146 lpkaGlGlicGetGsGkstllaai 169
                  +p++ +  + G+ GsGks+ l+a+
  MMETSP1174-20130828|22771_1 352 IPSNAITCVVGPCGSGKSSFLSAL 375
                  68899999***********99987 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 8.1
    TIGR02525   12 lreffvhcerhevsdidlqgGskivve 38  
                   +r f vhc +h  +++ l   ++  v 
  MMETSP1174-20130828|22771_1  983 FRAFSVHCDEHTKAELALWVSNRWLVM 1009
                   799********9999998777776665 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0059
    TIGR02525  151 lGlicGetGsGkstllaaiyry 172 
                   +G + G tG+Gkstl++a++r 
  MMETSP1174-20130828|22771_1 1137 VG-VVGRTGAGKSTLASALFRL 1157
                   55.569**************96 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       3.8   2.3e+02       8      25 ..     360     377 ..     356     382 .. 0.89
   2 ?   -2.0   0.0       9.2   5.6e+02      62     124 ..     532     594 ..     530     597 .. 0.64
   3 ?    8.4   0.1    0.0061      0.37       5      23 ..    1136    1154 ..    1134    1157 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 3.8
    TIGR00231   8 ivGhvdvGKstLlnsllk 25 
                  +vG  ++GKs+ l+ ll+
  MMETSP1174-20130828|22771_1 360 VVGPCGSGKSSFLSALLG 377
                  8999**********9997 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 9.2
    TIGR00231  62 Gqedfdairrlyvreverslevvdivilvldveeglekqtkeiihe.akkkgvpiilvvnKiDl 124
                  Gq+++  + r+ +r    +    d+ ++v++  +    + k i    +k+ ++ +ilv  +iDl
  MMETSP1174-20130828|22771_1 532 GQQQRVSLARACYRHGVEVFLLDDVLSAVDAHVSEA-IWNKCILGLlRKQRNATVILVTHQIDL 594
                  666666677777766666666666667744433333.566666555155679999999999997 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0061
    TIGR00231    5 kivivGhvdvGKstLlnsl 23  
                   ++++vG+ ++GKstL + l
  MMETSP1174-20130828|22771_1 1136 RVGVVGRTGAGKSTLASAL 1154
                   79*************8766 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.036       2.2       2      27 ..     349     374 ..     348     387 .. 0.87
   2 ?    3.3   0.0     0.064       3.9       3      34 ..    1129    1160 ..    1127    1170 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.036
    TIGR04075   2 kleipelslvvlvGasgsGkstfark 27 
                  ++eip+ ++  +vG+ gsGks+f   
  MMETSP1174-20130828|22771_1 349 RVEIPSNAITCVVGPCGSGKSSFLSA 374
                  579********************765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.064
    TIGR04075    3 leipelslvvlvGasgsGkstfarkhfkptev 34  
                   l ip  + v +vG +g+Gkst+a   f+  e 
  MMETSP1174-20130828|22771_1 1129 LVIPPGTRVGVVGRTGAGKSTLASALFRLLEP 1160
                   6688888899***************9987765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.48        29     178     198 ..     358     378 ..     332     384 .. 0.84
   2 ?    6.4   0.0     0.014      0.85     176     195 ..    1135    1154 ..    1110    1158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.48
    TIGR03594 178 iaiiGrpNvGKStLvNallge 198
                   +++G   +GKS+++ allge
  MMETSP1174-20130828|22771_1 358 TCVVGPCGSGKSSFLSALLGE 378
                  5899***************98 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.014
    TIGR03594  176 ikiaiiGrpNvGKStLvNal 195 
                   ++++++Gr  +GKStL  al
  MMETSP1174-20130828|22771_1 1135 TRVGVVGRTGAGKSTLASAL 1154
                   6999***********98877 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0      0.01      0.63     438     462 ..     356     380 ..     336     382 .. 0.85
   2 ?    0.6   0.0      0.44        27     442     458 ..    1139    1155 ..    1136    1167 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.01
    TIGR00929 438 GhTlIfGptgsGKTvllnfllaqlq 462
                    T+++Gp gsGK+ +l+ ll +lq
  MMETSP1174-20130828|22771_1 356 AITCVVGPCGSGKSSFLSALLGELQ 380
                  569*****************98776 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.44
    TIGR00929  442 IfGptgsGKTvllnfll 458 
                   ++G tg+GK++l + l 
  MMETSP1174-20130828|22771_1 1139 VVGRTGAGKSTLASALF 1155
                   79**********88875 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         4   2.4e+02       4      23 ..     359     378 ..     357     381 .. 0.89
   2 ?    7.7   0.1    0.0073      0.45       2      20 ..    1136    1154 ..    1135    1157 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 4
    TIGR00436   4 ailGrpnvGKSTLlNkllgq 23 
                   ++G+   GKS +l  llg+
  MMETSP1174-20130828|22771_1 359 CVVGPCGSGKSSFLSALLGE 378
                  69*************99986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0073
    TIGR00436    2 fvailGrpnvGKSTLlNkl 20  
                   +v+++Gr+ +GKSTL   l
  MMETSP1174-20130828|22771_1 1136 RVGVVGRTGAGKSTLASAL 1154
                   79*************7665 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0044      0.27      19      42 ..     350     374 ..     346     378 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0044
    TIGR02168  19 infe.kgitgiVGPNGcGKSNivDA 42 
                  ++++ + it +VGP G+GKS  + A
  MMETSP1174-20130828|22771_1 350 VEIPsNAITCVVGPCGSGKSSFLSA 374
                  5555478*************76655 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.045       2.8      27      46 ..     355     374 ..     334     380 .. 0.89
   2 ?    0.8   0.1      0.29        18      32      46 ..    1139    1153 ..    1133    1155 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.045
    TIGR00618  27 lklfvicGktGaGKtsLldA 46 
                  + + ++ G+ G+GK+s l A
  MMETSP1174-20130828|22771_1 355 NAITCVVGPCGSGKSSFLSA 374
                  7899**************98 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.29
    TIGR00618   32 icGktGaGKtsLldA 46  
                   + G+tGaGK++L  A
  MMETSP1174-20130828|22771_1 1139 VVGRTGAGKSTLASA 1153
                   78**********776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                       105  (0.0255973); expected 4.1 (0.001)
Passed Fwd filter:                        67  (0.0163335); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              67  [number of targets reported over threshold]
# CPU time: 3.19u 0.26s 00:00:03.45 Elapsed: 00:00:01.52
# Mc/sec: 1223.50
//
Query:       MMETSP1174-20130828|22773_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   12.4   0.6      0.011   11.7   0.0    1.6  2  TIGR00930 2a30: K-Cl cotransporter


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.8e-06     0.011     883     925 ..      48      91 ..       9      99 .. 0.78
   2 ?   -3.3   0.0     0.093   3.8e+02     764     790 ..     255     281 ..     254     290 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-06
    TIGR00930 883 ksrdAklvllslPvprknsesdelymeflevlse.dlprvllvR 925
                    ++ +l++ ++P+ r +  +++lym++le +++ +l+r  l+R
  MMETSP1174-20130828|22773_1  48 TDNEIALMVRTMPINRGGVLTQSLYMKWLENVTRpGLERRALLR 91 
                  45678999**********************99984688877777 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.093
    TIGR00930 764 lltqkkkwkkCklrifvvaekddesee 790
                  l tq k+w k + rif+ + + ++  +
  MMETSP1174-20130828|22773_1 255 LATQDKVWYKSRRRIFITSLMAEKRGK 281
                  67899***********99866655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1455.10
//
Query:       MMETSP1174-20130828|22777_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-08   29.4   0.1    0.00032   17.5   0.1    2.0  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
      7e-07   26.3   0.8    0.00029   17.7   0.1    2.1  2  TIGR02037 degP_htrA_DO: peptidase Do
      8e-07   26.2   0.1    3.2e-05   20.9   0.0    2.1  2  TIGR00225 prc: C-terminal processing peptidase
     0.0023   14.8   0.0      0.015   12.1   0.0    2.0  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.1e-07   0.00032     182     258 ..      82     168 ..      42     177 .. 0.66
   2 !   10.7   0.0   3.5e-05     0.036     175     235 ..     172     232 ..     156     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.1e-07
    TIGR00054 182 a........erenitleeeke....lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvkenp..eksleikveR 258
                           e   +t++++ +    lk ++    +v+++v   ++ ekaG++  D+i+ ++g+ +   + +vk  +e +  e+ l++k+ R
  MMETSP1174-20130828|22777_1  82 SfnlqpssvEELTYTFDNSNDigmsLKSVK--DRIVVKKV--SDQSEKAGMQCNDHIVAVNGHSVWGIKSFVKHFEEAKasEHPLSLKIWR 168
                  243333333444899999877553344444..46788888..7788999***********************9999865114446666666 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 3.5e-05
    TIGR00054 175 evsveilaerenitleeeke..lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklk 235
                  + s  +  +r ++ +e +k   l     ++ + ls+v   ++a+k Gl++GD+++  +ge  +
  MMETSP1174-20130828|22777_1 172 SASAAVRYRRMEFNFEAKKPsgLSTSYSENAILLSKV--SGAAKKKGLRAGDEVIALNGECCQ 232
                  5556666677777888776566888888889999999..899999*************98765 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.9e-07   0.00029     346     428 ..      86     171 ..      56     177 .. 0.68
   2 !    7.2   0.0   0.00043      0.44     264     293 ..     206     233 ..     182     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.9e-07
    TIGR02037 346 lglsvadlseeaakk....kkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkker.vlllvergge 428
                  +  sv++l+ + +++    ++ k++k  +vv+kv+ +   +kag++ +d i++vn ++v  ++ + k  eeak +e  ++l++ r  +
  MMETSP1174-20130828|22777_1  86 QPSSVEELTYTFDNSndigMSLKSVKDRIVVKKVSDQ--SEKAGMQCNDHIVAVNGHSVWGIKSFVKHFEEAKASEHpLSLKIWRSPA 171
                  3344555554333222234566778888899998855..6778**************************9999988889999988765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00043
    TIGR02037 264 aevlkgspAekaGlkaGDvilkvngkkiks 293
                  ++v  +++A+k Gl+aGD ++++ng+  ++
  MMETSP1174-20130828|22777_1 206 SKV--SGAAKKKGLRAGDEVIALNGECCQR 233
                  444..58999***************87665 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.2e-08   3.2e-05      34     110 ..      85     156 ..      59     197 .. 0.76
   2 !    3.5   0.0    0.0065       6.6      73      94 ..     210     231 ..     193     244 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.2e-08
    TIGR00225  34 lskeeakelsettsgeleGiGiqvqmeddeivivsplegsPAekagikpgDkIikvdgksvagmelddavelirGkk 110
                  l++ +++el  t + + + iG+++++ +d+iv++++  +s  ekag++ +D+I++v+g+sv g+     v+     k
  MMETSP1174-20130828|22777_1  85 LQPSSVEELTYTFDNS-NDIGMSLKSVKDRIVVKKVSDQS--EKAGMQCNDHIVAVNGHSVWGI--KSFVKHFEEAK 156
                  7888888888888776.56**************9998886..9*****************9764..45555555554 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0065
    TIGR00225  73 sPAekagikpgDkIikvdgksv 94 
                  + A+k g+++gD++i+++g+  
  MMETSP1174-20130828|22777_1 210 GAAKKKGLRAGDEVIALNGECC 231
                  4589999***********9854 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.5e-05     0.015     122     173 ..     119     172 ..      45     185 .. 0.90
   2 ?    0.5   0.0     0.047        48     122     146 ..     208     232 ..     199     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
    TIGR02860 122 iesPaeeagiqvGDlilkvngekikeeedvaklineag..geklkltikRkkkk 173
                  ++  +e+ag+q  D i++vng+++   +   k ++ea+  ++ l+l+i R  + 
  MMETSP1174-20130828|22777_1 119 VSDQSEKAGMQCNDHIVAVNGHSVWGIKSFVKHFEEAKasEHPLSLKIWRSPAS 172
                  5556799***************************99997778899999997665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.047
    TIGR02860 122 iesPaeeagiqvGDlilkvngekik 146
                  ++  a++ g++ GD ++++nge  +
  MMETSP1174-20130828|22777_1 208 VSGAAKKKGLRAGDEVIALNGECCQ 232
                  55568999*************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.40
# Mc/sec: 844.73
//
Query:       MMETSP1174-20130828|22784_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.39
# Mc/sec: 247.06
//
Query:       MMETSP1174-20130828|22786_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 714.94
//
Query:       MMETSP1174-20130828|22789_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-28   96.4   0.0    6.2e-28   96.0   0.0    1.1  1  TIGR00671 baf: pantothenate kinase, type III


Domain annotation for each model (and alignments):
>> TIGR00671  baf: pantothenate kinase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   1.5e-31   6.2e-28      54     234 ..      65     236 ..      51     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 1.5e-31
    TIGR00671  54 fisSvvpeltealrnvipkikkikplivfplvkdglpvkyknpkelGaDrvvnalaAielygkavvVVdaGtAltidlvdeegkilGgaIapGlaislealkdraaalpk..velarpeevlgkdTveavqsGvvfgvlglieglvkrikkelkrkaavvitGgagkllseleklkiydehLt 234
                    +Svvp++ + + ++ p++  ++           +    + p  +G Dr++++ +A e++g +v+V+d GtAlt+++   +g++lGgaI pG+ ++leal++ +aalp+  +++a p +   ++T +a+ sG+   v+   +  ++ + +e +    vvitGg   +l + +     +++L+
  MMETSP1174-20130828|22789_1  65 WCASVVPVQLNCIMQIFPNARVVESGDA-------ISGLHDYPT-FGVDRALALRGAGERWGWPVLVIDGGTALTFTAGTMTGELLGGAIVPGVSLQLEALASGTAALPHvpLQMAPPASRWARSTADAIWSGIAHTVISTAKDFAASWMEEHP-LGRVVITGGSREFLRQGL--ASNNHSLV 236
                  5789999998888888888777776622.......222344488.*****************************************************************55567889************************************.559******888887633..33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|22792_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|22793_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 599.03
//
Query:       MMETSP1174-20130828|22794_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1719.16
//
Query:       MMETSP1174-20130828|22795_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-103  344.0   0.0   1.6e-103  343.9   0.0    1.0  1  TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein
    0.00043   17.0   0.1     0.0014   15.3   0.0    1.7  2  TIGR03978 rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
  ------ inclusion threshold ------
      0.011   12.6   0.1      0.021   11.7   0.1    1.5  2  TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase


Domain annotation for each model (and alignments):
>> TIGR04167  rSAM_SeCys: radical SAM/Cys-rich domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.9   0.0  1.2e-106  1.6e-103      37     298 ..       1     269 []       1     269 [] 0.96

  Alignments for each domain:
  == domain 1    score: 343.9 bits;  conditional E-value: 1.2e-106
    TIGR04167  37 mskevveeilellkksk.iktlDltGGaPelnpefrelveearklgkevivRsnltileeegledlaeflaekkvevvaslPcyeeenvdkqRGkgvfeksiealkkLnelGYgkeeselelnLvynpegaslppsqkelekeykkeLkekfgieFneLftitnmPigrfaeaLekkgkleeYlelLeeafneetvekvmCrslisvdwdGklydCDFnqmlelklkke.....kkktikdl.eeeelekreiavaehCygCtaGaGss 298
                  m+++v +++++++k+s+ i+tlD+tGGaPe+n++fr++v++a+klg ++i+R+nlt+l+e+++edl +fl e+kv++ as+Pcy+++nv+ qRG++vfe+si+ l kLne GYgke+s+l+l+Lvynp ga+lpp+q+ l ++yk+eL++ fgi+FneLft+tnmPi+rfa+ L ++g+l++Y++lL ++fn++tv+++mC ++++v wdG++ydCDFnq+l++ +  +     +   + ++ + ++l k ++++++hC+gCtaG Gss
  MMETSP1174-20130828|22795_1   1 MDEKVADRCIHIIKNSPsIHTLDITGGAPEMNSQFRRIVRAASKLGIDIIDRCNLTVLMEPDQEDLVDFLVEHKVHIAASMPCYSAKNVNMQRGNNVFERSIDGLLKLNEAGYGKEGSGLVLDLVYNPLGAFLPPPQAPLTEKYKQELMDVFGIRFNELFTMTNMPIKRFADLLYRRGELKDYMDLLVRNFNPDTVSNLMCTNTLNVRWDGRIYDCDFNQQLDMDIGVDeaslkSGYDVFSIeKVDDLLKYDMNMDSHCFGCTAGMGSS 269
                  8999***********999**************************************************************************************************************************************************************************************************************98766333333445556666789999******************8 PP

>> TIGR03978  rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-06    0.0014     114     230 ..       1     111 [.       1     121 [. 0.80
   2 ?   -0.9   0.1      0.08   1.1e+02     341     357 ..     201     217 ..     177     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1e-06
    TIGR03978 114 lseetaekavdlilkspsaslkiEfQGGepllrfdlikkivelaeeknkeekkelefviatnlslltdeileflkekkvlistSlDGpeelHnknRplksknsyekvvsglkkvrea 230
                  ++e++a++ +++i++sps   ++++ GG p ++ +  ++iv+ a++  +   ++ ++++    +  +++ ++fl e+kv+i+ S+   + + n n ++ ++n +e+ ++gl k++ea
  MMETSP1174-20130828|22795_1   1 MDEKVADRCIHIIKNSPS-IHTLDITGGAPEMNSQ-FRRIVRAASKLGIDIIDRCNLTVLM--EPDQEDLVDFLVEHKVHIAASMPCYS-AKNVNMQR-GNNVFERSIDGLLKLNEA 111
                  8899***********998.569**********976.6999999999998777777777664..4446899***************8754.44555333.56779*****99999987 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.08
    TIGR03978 341 glnvlvynydGkvYasD 357
                   +n+l   +dG++Y +D
  MMETSP1174-20130828|22795_1 201 CTNTLNVRWDGRIYDCD 217
                  567888899*****999 PP

>> TIGR03942  sulfatase_rSAM: anaerobic sulfatase maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.28   3.9e+02     174     183 ..      68      77 ..      29     111 .. 0.47
   2 ?   11.7   0.1   1.5e-05     0.021     246     314 ..     193     262 ..     143     266 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.28
    TIGR03942 174 kflkelgsky 183
                  +fl e++++ 
  MMETSP1174-20130828|22795_1  68 DFLVEHKVHI 77 
                  3333333333 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.5e-05
    TIGR03942 246 klCvhaetCgkelvvEsnGdvysCDhyvypeyklgnieekslee...laesekqkkFgaakseklsekCkkC 314
                     v + +C ++l v  +G +y CD+  + ++ +g  +e sl++   +++ ek  +   +   +++++C  C
  MMETSP1174-20130828|22795_1 193 PDTVSNLMCTNTLNVRWDGRIYDCDFNQQLDMDIGV-DEASLKSgydVFSIEKVDDL-LKYDMNMDSHCFGC 262
                  55677889*********************9999994.67666641113333444444.55566677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 789.00
//
Query:       MMETSP1174-20130828|22796_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-17   58.3   0.0    1.1e-16   57.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.5e-07   28.9   0.0    2.9e-07   28.0   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0059   13.4   0.1      0.011   12.4   0.1    1.5  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   7.9e-20   1.1e-16      56     265 ..      11     226 ..       4     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 7.9e-20
    TIGR03903  56 avFeyveGrtlre.vLaadGaLpaaetgrLmlqvLDalaaahda.GvvhRDLkPqnimvsaadveshakvLDFGigaLl.pgvedadeatl...trttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLge...vLRkalnkdvrqRaasaealaerfralelaalvGilrageraGrk 265
                   v e+  G  l + v+ ++  L  + t+r++ q+L ++   hd+ G+vhRDLkP+ni+    d +s   ++DFG+++   +++++ ++ +     + +  +G+  Y aPe    e    + D+++ G++ +  L G +  +     e+++     ++v + +    h   +    + + l+kd+ +R  +aeal +r   ++ a +    + ++  G++
  MMETSP1174-20130828|22796_1  11 IVQELCRGAELFDrVIDSKSGLEEKATARIVSQILSGIQYCHDEiGIVHRDLKPENIVFRSDDADSDIVIIDFGLSSFAsSDMHETNTGKQvqnDALKTRVGTLYYIAPEVF-SEKYGRACDIWSIGVLTFLMLCGYPPYNAPDELEIMQLVREAKPVRFEPLYWNHVSQDaksFILRLLKKDPSERPSAAEALKDRWFSMHDAGVQS--NHRPNTGIQ 226
                  577788887776526778899*********************866*******************************9962588887654440004456789*********76.7899999*********999*******99999999988655555565555444443222112444589**************98887777666555..555556655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.1e-10   2.9e-07      92     176 ..      36     127 ..       4     139 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.1e-10
    TIGR03724  92 el.ellkevGelvgklHk.agivhgDlttsNiivk....ddklyliDfGLgkk.skevedkavDlhvlkrslestheelaeelieaflegYk 176
                   + ++++++   +  +H+  givh Dl ++Ni+++    d+++++iDfGL+++ s+++ ++ +  +v +++l++   +l   + e f e+Y 
  MMETSP1174-20130828|22796_1  36 ATaRIVSQILSGIQYCHDeIGIVHRDLKPENIVFRsddaDSDIVIIDFGLSSFaSSDMHETNTGKQVQNDALKTRVGTLYYIAPEVFSEKYG 127
                  22578888888899999626**************76666789********998466667777777777777777666666666666666665 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   8.4e-06     0.011     346     423 ..     446     523 ..     396     525 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.4e-06
    TIGR02037 346 lglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelk..kvleeakkkervlllv 423
                  +g+s++++ ++     + +++   +v+t+v++ks a++ag+++ +++++v++++ +++ +++  ++l++++++e ++l+v
  MMETSP1174-20130828|22796_1 446 KGMSLTHVVPAFGF--NLQRVAGKIVITSVDSKSSAEEAGIRPLQLLIAVGDNSTENMTKMMaeRLLSTQAQNEAITLTV 523
                  45555566655544..3456667789999999999999999999999999999999888875114566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.44
# Mc/sec: 1748.86
//
Query:       MMETSP1174-20130828|22797_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.40
# Mc/sec: 1501.38
//
Query:       MMETSP1174-20130828|22800_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|22801_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.71
# Mc/sec: 184.04
//
Query:       MMETSP1174-20130828|22799_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 216.24
//
Query:       MMETSP1174-20130828|22803_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 252.50
//
Query:       MMETSP1174-20130828|22802_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1270.87
//
Query:       MMETSP1174-20130828|22807_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 251.98
//
Query:       MMETSP1174-20130828|22808_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 751.94
//
Query:       MMETSP1174-20130828|22804_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-11   41.8   0.0    1.4e-05   22.0   0.0    3.0  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.9e-06    0.0077      46     101 ..       9      73 ..       2      88 .. 0.71
   2 !   22.0   0.0   3.4e-09   1.4e-05     251     369 ..     199     327 ..     190     338 .. 0.78
   3 !    3.0   0.0    0.0019       7.9     403     423 ..     398     418 ..     392     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.9e-06
    TIGR03417  46 ytasPlcaParasllsGklPsrig.......vydnaaefasdip..tyahylraaGyktalsGkm 101
                  y +   c+Par+sll+G+ P +ig        +d a+ +  d+        l+ +Gy+t++ Gk 
  MMETSP1174-20130828|22804_1   9 YYTQQSCTPARVSLLTGRYPWKIGfgydtigSFDVASPYGLDLKwsILPQVLKMKGYRTVMIGKW 73 
                  445567**************987631111114555555554443225678999********9996 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 3.4e-09
    TIGR03417 251 arrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwy.....kmsffegsarvPllvaaperleagrveaavstv....dllPtlvelagveleev..lpaldGeslvpllkgker 369
                  +r  +  ++  +d  +  + e+l ++ l  ++ ++f+sd G    +    y     k +++eg+ rvP +v+++  l++ +v + v ++    d +Pt++++++   +e   ++ ldG + + +l+g ++
  MMETSP1174-20130828|22804_1 199 SRIKFAKTLVALDRSLRRVWEALIDSDLYRNSYIIFASDNGGCPSDGANNYplrggKFTYYEGGVRVPAFVHSKL-LSSDMVGKEVDSLfhvsDWVPTIMNMTKCGNAEYalMTDLDGVNQIDVLNGGSA 327
                  555555566789999**************************99887777665566689**************987.7777766666443333599*******9987766511557899999888887654 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.0019
    TIGR03417 403 PeqlydleadPkelenlaeep 423
                   + l++l++dP+e +nl ++ 
  MMETSP1174-20130828|22804_1 398 SDWLFNLAEDPTETKNLVTSL 418
                  578**************8753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 1239.66
//
Query:       MMETSP1174-20130828|22815_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.48
# Mc/sec: 255.73
//
Query:       MMETSP1174-20130828|22813_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|22817_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 620.84
//
Query:       MMETSP1174-20130828|22818_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 172.06
//
Query:       MMETSP1174-20130828|22821_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.51
# Mc/sec: 147.52
//
Query:       MMETSP1174-20130828|22825_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 648.47
//
Query:       MMETSP1174-20130828|22822_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 878.85
//
Query:       MMETSP1174-20130828|22828_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.79
# Mc/sec: 297.39
//
Query:       MMETSP1174-20130828|22831_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|22830_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 519.71
//
Query:       MMETSP1174-20130828|22834_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 769.18
//
Query:       MMETSP1174-20130828|22838_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 909.78
//
Query:       MMETSP1174-20130828|22840_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 578.02
//
Query:       MMETSP1174-20130828|22842_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-29   99.8   8.3    5.9e-29   99.1   5.7    1.3  1  TIGR00887 2A0109: phosphate:H+ symporter
    0.00079   16.1  10.0     0.0019   14.9   6.9    1.6  1  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   5.7   2.9e-32   5.9e-29     272     454 ..      58     233 ..      43     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 2.9e-32
    TIGR00887 272 asssdfvtkfskrkhgklLlGtavsWflLDiafYgvnLnqkvilkai.GysetaeknnayeelyktavgnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek..gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladk 454
                   s+ d+   fs   h+++L+Gt+ +W+l Di  Ygv+++   i++a+ G set +++  +++++ tav         tvP   ++v+lv ++  + +q  GF + +v f+++++ +n +s++   l+  + l++f + F   attF++P  +F   +Rs + G+saa+GkvGa i+++++ +l d 
  MMETSP1174-20130828|22842_1  58 FSFGDLTAAFSDSTHSSALFGTSACWLLFDIYVYGVSIYTPEIMDALfGSSETLAQDY-WQNVMSTAV---------TVPAALLNVYLVYSVKPRDLQTYGFAVAAVSFAAMGVCWNLFSDNkvFLFCAFLLLKFATMFAVPATTFLLPNTIFHKNIRSSCNGVSAASGKVGAFIGTFGFPYLFDA 233
                  5788999**************************************9736665555555.677777765.........89*****************************************996556677999*************************************************99874 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   6.9   9.2e-07    0.0019     322     487 ..      69     246 ..      22     258 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.2e-07
    TIGR00898 322 tpklrkttlllmllwfttafsYygLvldleelggn..........iYldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk....llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlall 487
                   ++    ++  ++ w+   + +yg ++ ++e+  +          +Y++ ++s++v +pa+l+ + l++++  r  +   +++a+v++ ++ ++ +  +    +l  a +++  a + ++  + +l+ + ++   +R +  gv+++  +vG+ i  f +     +++f  +++f ++a++
  MMETSP1174-20130828|22842_1  69 DSTHSSALFGTSACWLLFDIYVYGVSIYTPEIMDAlfgssetlaqDYWQNVMSTAVTVPAALLNVYLVYSVKPRDLQTYGFAVAAVSFAAMGVCWNLFSdnkvFLFCAFLLLKFATMFAVPATTFLLPNTIFHKNIRSSCNGVSAASGKVGAFIGTFGFP--YLFDAFGMAGVFFSCAVI 246
                  44444555667899**************99998888999******************************************************9987766666555555555555555666789999999**********************99877655..334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1017.71
//
Query:       MMETSP1174-20130828|22843_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 1030.77
//
Query:       MMETSP1174-20130828|22847_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 443.63
//
Query:       MMETSP1174-20130828|22848_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 128.69
//
Query:       MMETSP1174-20130828|22852_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|22854_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   13.2  12.8     0.0032   13.0   8.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0037   12.9  16.2     0.0041   12.7  11.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.042   10.6   6.5      0.048   10.4   4.5    1.2  1  TIGR00998 8a0101: efflux pump membrane protein
       0.19    8.7   5.5       0.23    8.5   3.8    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.37    7.9  14.4       0.48    7.6  10.0    1.1  1  TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
        0.8    5.6  11.1       0.99    5.3   7.7    1.1  1  TIGR01005 eps_transp_fam: exopolysaccharide transport protein family
        4.2    4.6  15.8       0.23    8.8   5.0    2.0  2  TIGR03825 FliH_bacil: flagellar assembly protein FliH
        4.3    4.0  13.0        4.9    3.8   9.0    1.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   8.9   6.2e-06    0.0032     665     785 ..      30     150 ..       3     177 .. 0.50

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.2e-06
    TIGR02169 665 sgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedl 785
                  ++++ ++s ++++++ +  l +Le+e++++q+e + + ++l ++++  ++ ek++++  +  e+l+ + ++l++rl e e++     ++ ++   ++ +le+e e++ +++a   + l+++
  MMETSP1174-20130828|22854_1  30 KTSSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAAQRISHEHEKELSHSTSSNENLSMDSHQLRKRLVEAEKDAITWRRKYQQTLGKKSALEQEKESRARRAAPHGHRLDKM 150
                  2333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7  11.2   8.1e-06    0.0041     246     362 ..      26     142 ..       2     184 .. 0.33

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.1e-06
    TIGR02168 246 eelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaelee 362
                   ++++++++++++++e+++ +  l+ l++ek+  ++e+++l ++l ++++  ++ e+e+ +  ++ e+l+ ++++l ++l e+e++  + +++ ++   +++ l++e es + +++ 
  MMETSP1174-20130828|22854_1  26 FAASKTSSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAAQRISHEHEKELSHSTSSNENLSMDSHQLRKRLVEAEKDAITWRRKYQQTLGKKSALEQEKESRARRAAP 142
                  222222222222333333333333333333333333333333333333333333333333333333333333333333333333333333333332222222333332222222222 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.5   9.5e-05     0.048      71     166 ..      50     151 ..       5     189 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.5e-05
    TIGR00998  71 vklDptdaelalekaeaklaalvrkvkqleikvkk.lqa...kveslkikleqareklkqae...ldleRr..esllkkgliskEeldrarkallsakaaLeaai 166
                   +l++ +a  a+++  ++la+++r  +++  + +k l+    + e l++  +q+r++l +ae   ++++R+  ++l kk ++++E+  rar a  + +  L++ +
  MMETSP1174-20130828|22854_1  50 TSLEEEKA--AIQREANALASALRAAQRISHEHEKeLSHstsSNENLSMDSHQLRKRLVEAEkdaITWRRKyqQTLGKKSALEQEKESRARRAAPHGH-RLDKMK 151
                  44554444..34444455666666555555444331333222666677888999**99999999999***733679***************9987753.455555 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8   0.00045      0.23      22     159 ..      29     167 ..      13     186 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00045
    TIGR03752  22 ikslskseeeeq..tadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvgl.Gl 159
                   k+ s +++++   ++ + + ++  ee  a+  e++  +  lr     ++e++kel++ ++ Ne+l  ++++l+kr  + ++   +  +++++ l k++  l++e+++ +++ +   ++l++++a+ +ss + l  gl G+
  MMETSP1174-20130828|22854_1  29 SKTSSMEKSARDeiQNFQLMLTSLEEEKAAIQREANALASALRAAQRISHEHEKELSHSTSSNENLSMDSHQLRKRLVEAEKDAITWRRKYQQTLGKKSA-LEQEKESRARRAAPHGHRLDKMKAGPRSSFSHLK-GLkGA 167
                  3333333333332222223333334455566667888899999999999999***********************9888888777766666666665554.4555554445556667788888887777766665.55343 PP

>> TIGR02971  heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  10.0   0.00094      0.48      61     173 ..       4     133 ..       2     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00094
    TIGR02971  61 ktqldeAkarlaqrragakkievaasrlaraaakkvkdvaaqqaklnrleaeletaqrelerykslkkdga.........vsesaldskklkle..eaeeeleeakasls......eqleeekaalasia 173
                  ++q+d A+a +a+++a a +   aas+  + +++++++++  q  l  le+e    qre + ++s+ ++           +s+s   +++l ++  +++++l ea +++       +q  ++k al++ +
  MMETSP1174-20130828|22854_1   4 RKQVDNATADAAKEKAVALQYMFAASKTSSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAAQrishehekeLSHSTSSNENLSMDshQLRKRLVEAEKDAItwrrkyQQTLGKKSALEQEK 133
                  689************************************************************9999998876666666666666666666654113445555555555455555544444455444443 PP

>> TIGR01005  eps_transp_fam: exopolysaccharide transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.7    0.0019      0.99     301     406 ..      28     133 ..       7     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0019
    TIGR01005 301 rkteadlSeefkadhpeavaaksslrelkaqiaeelqkltksykneaevaqareeslskkvnslkakskdaseqevdldeLerdaaakkelyesyLtdyrqaksrq 406
                    ++  + +  +++ ++     +sl+e ka i+ e++ l ++++  + + ++ e+ ls +  s +  s d  + +  l+e e+da   +  y+  L++   +++ +
  MMETSP1174-20130828|22854_1  28 ASKTSSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAAQRISHEHEKELSHSTSSNENLSMDSHQLRKRLVEAEKDAITWRRKYQQTLGKKSALEQEK 133
                  5556666677788899999999***************************************************************************998888877 PP

>> TIGR03825  FliH_bacil: flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.0   0.00045      0.23      10      83 ..      10      83 ..       3      88 .. 0.75
   2 ?    0.2   3.3      0.19        96      15      77 ..      74     135 ..      71     153 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00045
    TIGR03825 10 svatakrrkiiplrqv...ldvketeseledeeqeeeevlekAkeeaaeliekAeaelaavrekieqeraeleeere 83
                  +a a + k ++l+++    ++++ e+++ de q+++ +l + +ee a + ++A+a + a+r++   +r++ e+e+e
  MMETSP1174-20130828|22854_1 10 ATADAAKEKAVALQYMfaaSKTSSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAA---QRISHEHEKE 83
                 345556667777777744455555666666******************************9975...5666666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.19
    TIGR03825  15 krrkiiplrqvldvketeseledeeqeeeevlekAkeeaaeliekAeaelaavrekieqerae 77 
                  +r+     +++ +  +++++l  ++++ ++ l +A+++a   ++k ++ l + + ++eqe+++
  MMETSP1174-20130828|22854_1  74 QRISHEHEKELSHSTSSNENLSMDSHQLRKRLVEAEKDAITWRRKYQQTLGK-KSALEQEKES 135
                  4555555555555555555566777777777777888888877777777765.5566666654 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.0    0.0095       4.9      92     225 ..       9     140 ..       1     167 [. 0.50

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0095
    TIGR01843  92 aleaevarlraeanseeaiefpdillsae.d.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqql...eliseelea.lrkLkekglvsrlelLelereraelqgelaeleaeleklkael 225
                  +++a++a+ +a         ++ ++++a      +++  ++ ++f+ ++++l++++++++++ + l + l+ +q+  ++ +++l   +  +e+l + + +L ++ + ++ + ++  r+++++ g+   le+e e+ ++ +
  MMETSP1174-20130828|22854_1   9 NATADAAKEKAV-------ALQ-YMFAASkTsSMEKSARDEIQNFQLMLTSLEEEKAAIQREANALASALRAAQRISHEHEKELshsTSSNENLSMdSHQLRKRLVEAEKDAITWRRKYQQTLGKKSALEQEKESRARRA 140
                  333333333332.......222.222222223566666667777777777777777777777666666666665555554444411133344444312344444444555555555555555555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 680.79
//
Query:       MMETSP1174-20130828|22849_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1730.94
//
Query:       MMETSP1174-20130828|22855_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.44
# Mc/sec: 1439.88
//
Query:       MMETSP1174-20130828|22860_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|22863_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 994.04
//
Query:       MMETSP1174-20130828|22862_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1114.57
//
Query:       MMETSP1174-20130828|22865_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   10.8   2.1      0.062   10.4   1.5    1.1  1  TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC


Domain annotation for each model (and alignments):
>> TIGR02162  torC: trimethylamine-N-oxide reductase c-type cytochrome TorC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5   1.5e-05     0.062      87     166 ..     109     189 ..     101     193 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.5e-05
    TIGR02162  87 takvkrklqaskevfa.eiagkidteekfeakrlelaereWarlkandsaeCkaChsy.eamdfdkqseearkqmkqaaeed 166
                   a  kr ++ +ke+++  ++g +d+  + e +rl +     +r++ n       C s  e+m   ++++ea++ mk+ a+++
  MMETSP1174-20130828|22865_1 109 GASSKRMFEKAKELHQrAMTGVVDESIAGEVERLVVHASRLDRVASNRR-SAEDCESIqESMTQTRKRHEAKILMKNKAARN 189
                  4567888999******899*************************99974.45667764389***************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 867.36
//
Query:       MMETSP1174-20130828|22866_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 819.24
//
Query:       MMETSP1174-20130828|22867_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 756.40
//
Query:       MMETSP1174-20130828|22868_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 800.18
//
Query:       MMETSP1174-20130828|22869_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1609.62
//
Query:       MMETSP1174-20130828|22872_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|22871_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 415.97
//
Query:       MMETSP1174-20130828|22874_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 551.53
//
Query:       MMETSP1174-20130828|22877_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1174-20130828|22873_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1838.19
//
Query:       MMETSP1174-20130828|22879_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-07   27.6   0.1    4.1e-07   27.4   0.1    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1     1e-10   4.1e-07      11      61 ..      28      75 ..      20      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1e-10
    TIGR00601 11 qkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvke 61
                 +++++d+ pd+ +k lK++ie+e +   +   qq+Liy Gk L+D + ++ 
  MMETSP1174-20130828|22879_1 28 KTITLDIGPDDSIKDLKTQIEDELS---VLPRQQRLIYDGKQLEDGVKLSS 75
                 7899*********************...77789************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 456.46
//
Query:       MMETSP1174-20130828|22878_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1139.91
//
Query:       MMETSP1174-20130828|22882_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.1   0.2     0.0046   13.9   0.1    1.0  1  TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit


Domain annotation for each model (and alignments):
>> TIGR02363  dhaK1: dihydroxyacetone kinase, DhaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.1e-06    0.0046     117     167 ..      11      59 ..       9      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-06
    TIGR02363 117 aaelaeaegikvekvvvdddvavedslytagrrGvagtvlvekivGaaaek 167
                  a+ l  a g + e+ +v dd+ v+ s  ta    +a+ vl+e +vG  a+ 
  MMETSP1174-20130828|22882_1  11 ATRLSPAAGWELEEAIVADDITVDTSAATAA--PTATVVLIETVVGWEADD 59 
                  5667777888999************998886..68999********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.80
# Mc/sec: 118.79
//
Query:       MMETSP1174-20130828|22883_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.5   0.2      0.045   10.6   0.2    1.3  1  TIGR02651 RNase_Z: ribonuclease Z


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   1.1e-05     0.045      42      65 ..      16      39 ..      12      40 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.1e-05
    TIGR02651 42 llkskisfkkidkIfitHlHgDHi 65
                 l++ +++++ +d ++ tHlH DH 
  MMETSP1174-20130828|22883_1 16 LKEVNVAPEGVDIVCHTHLHRDHT 39
                 567899*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 600.34
//
Query:       MMETSP1174-20130828|22885_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 591.95
//
Query:       MMETSP1174-20130828|22888_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.4   0.0      0.029   12.4   0.0    1.0  1  TIGR03095 rusti_cyanin: rusticyanin


Domain annotation for each model (and alignments):
>> TIGR03095  rusti_cyanin: rusticyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.1e-06     0.029      23      52 ..      12      41 ..       3      53 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.1e-06
    TIGR03095 23 vnnktvlvvlaavldgfslysfeiedlknP 52
                   n+t+++v++av + +s+ + ei++  n 
  MMETSP1174-20130828|22888_1 12 SPNSTMQLVIMAVKEEPSMEAVEIKGYPNV 41
                 569*********************998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|22887_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 732.89
//
Query:       MMETSP1174-20130828|22891_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 568.29
//
Query:       MMETSP1174-20130828|22893_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-13   48.3   0.0    1.7e-13   48.2   0.0    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.7e-12   45.2   0.0    1.9e-12   45.0   0.0    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    6.9e-07   27.0   0.0    7.8e-07   26.8   0.0    1.0  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    8.9e-06   22.6   0.0    9.9e-06   22.4   0.0    1.0  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    9.6e-05   18.9   0.0     0.0001   18.8   0.0    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    9.9e-05   19.1   0.0    0.00012   18.8   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00072   17.1   0.0    0.00072   17.1   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   2.9e-16   1.7e-13     220     291 ..      13      83 ..       4      84 .] 0.95

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 2.9e-16
    TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGRei 291
                    +YvGnl  +++ q+L++ F++ G+ ++ +++  p   rskGyG ++F  a+ a+ A+e lN  e+ GR+i
  MMETSP1174-20130828|22893_1  13 VSVYVGNLSWDVSWQDLKDHFKSAGNPLHADVMTGPGN-RSKGYGLVTFATAQDAQTAIESLNDTEMNGRKI 83 
                  568*******************************9988.*******************************98 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.2e-15   1.9e-12     285     357 ..      12      84 .]       8      84 .] 0.85

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 3.2e-15
    TIGR01628 285 gvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLy 357
                  gv +Yv Nl   v  ++L+++F+  G+   a vm+ + ++Skg+G V+f+++++A+ A++ l+ + +ng+ +y
  MMETSP1174-20130828|22893_1  12 GVSVYVGNLSWDVSWQDLKDHFKSAGNPLHADVMTGPGNRSKGYGLVTFATAQDAQTAIESLNDTEMNGRKIY 84 
                  6778999999999999999999999999999999999999999999999999999999999998888887665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   7.8e-07     264     339 ..       8      82 ..       2      84 .] 0.90

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.3e-09
    TIGR01661 264 asdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrv 339
                    dg g  ++v nls d   + l   f   G      ++  +  n+ kGyg+v+ +  ++a +ai+sln +++ +r 
  MMETSP1174-20130828|22893_1   8 G-DGGGVSVYVGNLSWDVSWQDLkDHFKSAGNPLHADVMTGP-GNRSKGYGLVTFATAQDAQTAIESLNDTEMNGRK 82 
                  3.78899**********987777589***************9.9*****************************9985 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.7e-08   9.9e-06      56     128 ..      10      81 ..       4      84 .] 0.92

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.7e-08
    TIGR01648  56 erGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGr 128
                  + G+ v+vG +  d+   +l   f  +G+  +  +m     + +Gy +vtf+  ++a+ a+  ln+ e+ +Gr
  MMETSP1174-20130828|22893_1  10 GGGVSVYVGNLSWDVSWQDLKDHFKSAGNPLHADVMTGPGNRSKGYGLVTFATAQDAQTAIESLNDTEM-NGR 81 
                  56999********************************99999************************997.454 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.8e-07    0.0001     299     367 ..      15      82 ..       6      84 .] 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.8e-07
    TIGR01642 299 lyignLPldlkddqvkeLLesFGdLkaFnliKdlatG...lsKGyaFceykdssvtdlAiaaLnGiklgdkk 367
                  +y+gnL  d+  + +k+  +s G+ +  +    + tG    sKGy+ + +  + +++ Ai++Ln  ++ ++k
  MMETSP1174-20130828|22893_1  15 VYVGNLSWDVSWQDLKDHFKSAGNPLHAD----VMTGpgnRSKGYGLVTFATAQDAQTAIESLNDTEMNGRK 82 
                  89*******************99644444....444422379***********************9998877 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     2e-07   0.00012     205     269 ..      17      80 ..      13      83 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2e-07
    TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGG 269
                  v  +  d+s +dlk  f + G+ ++  +  +p  r  kG+G++ f+ +q  + ai s+n  ++ G
  MMETSP1174-20130828|22893_1  17 VGNLSWDVSWQDLKDHFKSAGNPLHADVMTGPGNR-SKGYGLVTFATAQDAQTAIESLNDTEMNG 80 
                  5666789*****************9**99999765.69*********************877777 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06   0.00072     102     175 ..       7      79 ..       1      84 [] 0.76

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
    TIGR01659 102 dtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvr 175
                  +++  g  + v  l  d++ ++l   f++ g      +m       s gy++v fa+  d+q ai+sln   + 
  MMETSP1174-20130828|22893_1   7 SGDGGGVSVYVGNLSWDVSWQDLKDHFKSAGNPLHADVMTGP-GNRSKGYGLVTFATAQDAQTAIESLNDTEMN 79 
                  444556677788888888888888889988877677777653.45799*********************86655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|22892_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 393.43
//
Query:       MMETSP1174-20130828|22890_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   20.6   1.9      0.003   13.7   0.0    2.6  3  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    0.00017   17.9   2.6      0.085    8.9   0.0    2.9  3  TIGR02063 RNase_R: ribonuclease R


Domain annotation for each model (and alignments):
>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-06     0.003     186     284 ..      57     151 ..      28     175 .. 0.74
   2 !    5.7   0.0   0.00039      0.81     504     531 ..     306     332 ..     300     366 .. 0.65
   3 ?   -2.1   0.2     0.092   1.9e+02     630     655 ..     436     461 ..     421     462 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-06
    TIGR00358 186 eveeeakktRedLtdlalVTiDsedakDlDDAvyvkkladkgfkLvVaI.ADvsaYvaenseldkeAkergssvYlp.efviPmlPeeLSnelCSLnpnek 284
                  + +   +++ +dL+++++V iD  + +  DDA+  ++    +  L V+I A     +  +s l++ Ak+++ + Ylp +  + + P+e  n   SL +++ 
  MMETSP1174-20130828|22890_1  57 QAHGTPQNGLVDLRAIPVVSIDQGSLR--DDAMSWDE---ASSTLSVHIsAALPGALPMDSLLEVLAKQKAEAYYLPgSVTLQLFPNEVLNA-GSLSSRDV 151
                  35556677889**************99..5**99888...6667888884445566899******************666678888887664.45555555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00039
    TIGR00358 504 TSPIRrYpDlivHRlikavlakeekttd 531
                  T P+RrY+Dl   R +  ++     t d
  MMETSP1174-20130828|22890_1 306 TAPLRRYADLLAQRQLLSLVGAS-DTSD 332
                  99************997766555.2333 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.092
    TIGR00358 630 kvykigDrvevkleevkleersiile 655
                  +  k+g  v v+++ v+l+ ++++++
  MMETSP1174-20130828|22890_1 436 QPLKVGSSVLVRIVSVDLTSKRVVTQ 461
                  55799****************99876 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   4.1e-05     0.085     244     350 ..      63     165 ..      34     215 .. 0.82
   2 !    8.0   0.0     8e-05      0.16     557     587 ..     306     335 ..     303     372 .. 0.68
   3 ?   -2.1   0.3     0.091   1.9e+02     684     705 ..     437     458 ..     423     462 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 4.1e-05
    TIGR02063 244 lkgRkDlrdlplvtIDgedakDlDDAvyvekkkdgnyklvVaI.ADVshYVkensalDkeAlkrgtSvYlvdrv.iPMLPekLSngiCSLnpnedrlalvvemeidkkG 350
                   +g +Dlr +p+v+ID    +  DDA++  + ++    l V+I A        +s l   A++++ ++Yl+  v + + P+++ n   SL  +    +++++ ++d++ 
  MMETSP1174-20130828|22890_1  63 QNGLVDLRAIPVVSIDQGSLR--DDAMSWDEASST---LSVHIsAALPGALPMDSLLEVLAKQKAEAYYLPGSVtLQLFPNEVLNA-GSLSSRDVNHCVTMRAVLDRTT 165
                  45678************9998..6****9999766...****966777888999*****************976368889998875.6888888888888877777665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 8e-05
    TIGR02063 557 TSPIRRYpDLivHrllkkalekeeklskeke 587
                  T P RRY+DL+  r l  ++  + ++s+ + 
  MMETSP1174-20130828|22890_1 306 TAPLRRYADLLAQRQLLSLVGAS-DTSDVEV 335
                  99**************9999965.4443333 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.091
    TIGR02063 684 vfrlGdevkvkvvevdkeekki 705
                    ++G +v v++v+vd+ +k++
  MMETSP1174-20130828|22890_1 437 PLKVGSSVLVRIVSVDLTSKRV 458
                  4689************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 1496.95
//
Query:       MMETSP1174-20130828|22898_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1174-20130828|22905_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1127.91
//
Query:       MMETSP1174-20130828|22904_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1598.53
//
Query:       MMETSP1174-20130828|22911_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 786.66
//
Query:       MMETSP1174-20130828|22912_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1174-20130828|22914_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1174-20130828|22915_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1174-20130828|22917_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|22919_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 670.50
//
Query:       MMETSP1174-20130828|22920_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|22916_1  [L=967]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-07   25.7 175.2    0.00013   17.7  35.3    4.1  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.008   11.7 172.6     0.0022   13.5  14.5    5.1  5  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  35.3   6.2e-08   0.00013     674     956 ..      22     308 ..      11     313 .. 0.69
   2 !    6.2  42.9   0.00018      0.38     677     942 ..     267     513 ..     249     530 .. 0.41
   3 !    8.1  28.9   4.8e-05     0.099     695     935 ..     490     727 ..     485     736 .. 0.76
   4 !   10.3  15.5   1.1e-05     0.022     710     880 ..     774     947 ..     757     960 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.2e-08
    TIGR02168 674 ilerkkeieeleeeieeleekia....elekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeie....eleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelre.eleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyelele 956
                  i+  ++++ +l+eeie+++++ +    + ++ l+ ++++ e++ +++++l +el+e+++kl++l ke ++lek+v++le +  ++e e+++l+++  ele++l++a+++ ++a+e+ +    +l+  i++++ ++++ + +  ++++e++      +++++ le+l+++ +++ + l   ++q + l+e+++ ++++ +++++ele+ ++e++++l++ +++++  a+l e + +el++   + +++ +  e+e +elrek+a++e+  +e++++++ l+e+l+e+ + + +
  MMETSP1174-20130828|22916_1  22 IQDYENRVLQLTEEIEKIKASNEagasSRDASLNGASSKDEDIYTRVQTLSQELDETRNKLTDLIKEHDELEKHVQELEVDHLKIETENSDLAQQLLELEQQLKDAKTAVSQAKENHKnklmQLKFVINEHRYAFEDGDLETIQASSEVN-----ESDLRTLLENLRSQRDSKDHALSLKQDQVDILSEQVTHMSKSRNDTQAELERVRTETNSVLASLEEEKRSGAALIEiKTSELEALKAKKDEAERFYEQEKTELREKVARIEASNKEIKADLEVLREQLEESRQATIN 308
                  556667777777777777666541111556788999999999999999999999999999999999999999999999999999999999999999999999999887775554444300003333444444444444444444444444.....23344456777777777777777777788888888888888888888888877777777777776665554444330333444444444444455678889999999999999999999999999999999887765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00018
    TIGR02168 677 rkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae 942
                   ++e  el+e+++++e++ +e+++ l+ l+++lee ++++ ++++ ++    +          +e+e   l +r++++e++l+e e++++e+++    ++++ ++   +ie+l+ ei++ +ee+ a++++l++l+++ ++ +++++ ++   + + ++i +l+ e  + ++q+e++ ++    ++e +e+++++++l+++l++  ke + +++ l++l+eel++      e   ++k+  +++++l+++l + +++++ +++e+++
  MMETSP1174-20130828|22916_1 267 YEQEKTELREKVARIEASNKEIKADLEVLREQLEESRQATINAESSERIRVGD----------IENERDDLIRRINEAEEKLQESEKQKKEARR---TSHNTEDNWLVKIEQLKVEIQAKSEEVLANQQELDALRRDKEAGERRFTAQQ---QAYDAQIVSLRAENADQQKQLEDMMQSHGVSAQEKREFSSKEAQLRARLDQQVKENELKQNLLEKLEEELSAS---SSEKVAAKKQHCAAIQSLKAELDESQRDCKVIKQELNT 513
                  33455555555555555555555555555555555554433333333333333..........3333333333333333333333333333332...3333334455555555555555555555555555555555555555555433...3344455555555555555555554444444444444444444555555444444444444444444442222...22222222222233333333333333333333333322 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 4.8e-05
    TIGR02168 695 iaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrlee 935
                  i++l++el+e +++ + +++el++ ++ + +l     e++k+ +r+++e+ +++++l+ ++++    ++  e+ e ++++ + +l++a++ +++ e+e+ q++ +++++++   +l+ el+e +++a+++e++++ + ke a+ e++  +l++ ++++e e+ ++ ++ + l+++ ++l++++++++  +a+l +++ ++ +  e+l+++ +  ++k +e+  +++el+ +l+++++++e 
  MMETSP1174-20130828|22916_1 490 IQSLKAELDESQRDCKVIKQELNTREALIADL---ELERNKHGDRHKNEISEIRQQLKTARADTMTTKQLVESMEMKMDSMRRRLEAARKGKDDAEQEVLQANMRHDEEKNLQHSLRLELNEVQIKANHNERERDVSVKERAKYEDMHARLQKITKDQELELFKMHESCALLSQKDAALKKAVDDVNRLRAELTQNRLQQLRTEESLRQRWKLSKSKHDEAVVQVKELELALKNARAACED 727
                  33444444444444444444444333333332...22344556677788888888888888888888888888888888888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988777666666668999999999999999999999888888888877765 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 1.1e-05
    TIGR02168 710 eeleeeleklrkeleelerklselkkelerlekeveqleerlaqle...keleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleel 880
                  + ++ +l+++++e  +l ++l +++ e++r+ +e +q   + ++++   + le++++e +el++ l++ e+   + ++ei +l+++ +++  +++ ++e+l   e+++ el++  + +++rl++++++++++  + e+l +q+++++++ e+++++++++ ++ ee++  + ++
  MMETSP1174-20130828|22916_1 774 QGYQAALATVKTEHSDLVHQLYNERDEYRRELNERQQPLVKNEDAHkstEVLEKVTKETKELRSTLSKFEQSELKLKSEIGKLKTNKAAALIDFSLNEEKLLLSEKQVAELSKVNNFQSNRLSMMTSQLENQIAKTEKLVSQLDSQTAKTEEVTSQLSSQVAKAEEMSMIIHKM 947
                  445556666666666766677777777766666666644333333300034566777777888888888888888888888888888888888888888888888888888877777777777777777777777777777777777777777777777777766666555554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  14.5   1.1e-06    0.0022     808     968 ..      15     175 ..       3     178 .. 0.47
   2 !    8.8  26.9     3e-05     0.061     308     510 ..     153     355 ..     139     361 .. 0.77
   3 !    8.2  35.7   4.3e-05     0.087     683     918 ..     316     555 ..     309     559 .. 0.65
   4 !    1.4  23.7    0.0049        10     706     900 ..     530     733 ..     524     739 .. 0.52
   5 !    4.9  14.2   0.00045      0.92     753     911 ..     783     942 ..     757     960 .. 0.43

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-06
    TIGR02169 808 vsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelse.leeev..keeeeepeeelslekvkkelekveeel 968
                  +s+ ++++++ e+++ +l+  +e  e+ ++  ++     ++  +    + e++ ++++ l++el+e+++++ +L +e+ +L+k ++ele +  ++e ++ +l+ ++ + +++lk+ k+++++++e+ ++ l + +   +e+ ++ e+ +le+++++ e  e +l
  MMETSP1174-20130828|22916_1  15 HSNYHKMIQDYENRVLQLT--EE-IEKIKASNEAGASSRDASLNGASSKDEDIYTRVQTLSQELDETRNKLTDLIKEHDELEKHVQELEVDHLKIETENSDLAQQLLELEQQLKDAKTAVSQAKENHKNkLMQLKfvINEHRYAFEDGDLETIQASSEVNESDL 175
                  4444455555555544444..22.22222222222222222223333444555566666666666666666666666666666666666666666666666666666666666665555554444433212222222344444455555555555555555555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 3e-05
    TIGR02169 308 eraiaekeeeledaeer..lakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklke.elnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesres 510
                  + a ++   e  +a  +  +  +   +++l+++ ++ ++++  ++ + + l+e++ +  + +++ +aele v +e + + + l+e+k+   +l e +  el+  + ++ e  +  e+e  el+++++rie++ +e++++le l+e++++++q    + +  ++++ ++ ++++e ++l ++++e+e++l+e e+q+k ++++s+++
  MMETSP1174-20130828|22916_1 153 RYAFEDGDLETIQASSEvnESDLRTLLENLRSQRDSKDHALSLKQDQVDILSEQVTHMSKSRNDTQAELERVRTETNSVLASLEEEKRSGAALIEiKTSELEALKAKKDEAERFYEQEKTELREKVARIEASNKEIKADLEVLREQLEESRQ---ATINAESSERIRVGDIENERDDLIRRINEAEEKLQESEKQKKEARRTSHNT 355
                  555554444444444440044455667888999999999999999999999999999999999999999999999999998888888876666552445555444666555666789999*************************9988765...5666778899999****************************9999998555 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 4.3e-05
    TIGR02169 683 rleeLereleslqselrriekrldelssklsdaekkieeiekel.eqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearl.eeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkeree....leaelrelekkkeeleaeiekkrk 918
                  r++++e+e+++l+++++++e++l+e +++ ++a++  ++ e ++  ++e+ + + +++ ee+ ++++el+  + +k++   +  a+ +++ +++  l+++ +d +++l e+ ++    ++++ + e s+ ea+l + ++++++++el+++lle+  +el ++  e  + kk+ +++i++lka+l+e ++  + +++++++ e+  +dL+ er++    +++e++e++++ +++ a+  + ++
  MMETSP1174-20130828|22916_1 316 RVGDIENERDDLIRRINEAEEKLQESEKQKKEARRTSHNTEDNWlVKIEQLKVEIQAKSEEVLANQQELDALRRDKEAGERRFTAQQQAYDAQIVSLRAENADQQKQL-EDMMQSHGVSAQE-KREFSSKEAQLrARLDQQVKENELKQNLLEKLEEELSASSSEKVAAKKQHCAAIQSLKAELDESQRDCKVIKQELNTREALIADLELERNKhgdrHKNEISEIRQQLKTARADTMTTKQ 555
                  566777888888888888888877777777777766666655441334444444444444555555555555555555555556666666666666666655543333.2333444444444.44455555555157999999999999999999999999999999999999999999999999999999999999999999999999988651111566666666666666666555554 PP

  == domain 4    score: 1.4 bits;  conditional E-value: 0.0049
    TIGR02169 706 delssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedle..aelseekieeieeelekleeevsriearleeieaelnk.......lelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr 900
                  d  ++++s+ +++++++++++ + ++  e  + +++ ++++l++  + + ++++e+ + + + +e ++  + l+ +l++++  a+ +e + + + +e  k e+ ++r+++++++ e el k       l+++ + l++++++ ++ ++el++++ ++ ++ e+l+++ +  +++ +e+ ++v+eLe  lk+ ++  e++  + r
  MMETSP1174-20130828|22916_1 530 DRHKNEISEIRQQLKTARADTMTTKQLVESMEMKMDSMRRRLEAARKGKDDAEQEVLQANMRHDEEKNLQHSLRLELNEVQikANHNERERDVSVKERAKYEDMHARLQKITKDQELELFKmhescalLSQKDAALKKAVDDVNRLRAELTQNRLQQLRTEESLRQRWKLSKSKHDEAVVQVKELELALKNARAACEDMVPHAR 733
                  334444444444444444444444444444444444444444444444444444444444444444444555555555533003333333444555555555556666666555555555500000004555556666666666666777777777777778888888888888888888888888888877777776665555 PP

  == domain 5    score: 4.9 bits;  conditional E-value: 0.00045
    TIGR02169 753 eleekkeelkeleaeieeleeklaklkealedle.aelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeelea 911
                   ++e+ + +++l +e +e++++l++ ++ l + e a++s e +e++++e+++l+ ++s+ e++  ++ +e+ kl+++k+ +       +e+    e+q +e+ k  + +  +l  + ++le++ a+ ++L ++l    ++ ee+ ++l+ +  k ee+++
  MMETSP1174-20130828|22916_1 783 VKTEHSDLVHQLYNERDEYRRELNERQQPLVKNEdAHKSTEVLEKVTKETKELRSTLSKFEQSELKLKSEIGKLKTNKAAALIDFSLNEEKLLLSEKQVAELSKVNNFQSNRLSMMTSQLENQIAKTEKLVSQLDSQTAKTEEVTSQLSSQVAKAEEMSM 942
                  2222333333333334444444444444333332123333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       778  (0.189664); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.96u 0.23s 00:00:02.19 Elapsed: 00:00:01.41
# Mc/sec: 905.20
//
Query:       MMETSP1174-20130828|22925_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1174-20130828|22927_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|22931_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|22929_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.7   0.0       0.32    8.8   0.0    2.0  2  TIGR00122 birA_repr_reg: biotin operon repressor


Domain annotation for each model (and alignments):
>> TIGR00122  birA_repr_reg: biotin operon repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   7.8e-05      0.32      27      55 ..       3      32 ..       1      42 [. 0.81
   2 ?    0.5   0.0     0.031   1.3e+02      20      31 ..     105     116 ..      97     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 7.8e-05
    TIGR00122 27 RtavnkhiqkLreeGvdVlvv.rkGYrLvp 55
                 R+a+  h+ +L + G dV ++  +  +L +
  MMETSP1174-20130828|22929_1  3 RKAITDHVHQLAQHGSDVISNiPSPHQLFK 32
                 9*****************998666666655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.031
    TIGR00122  20 sealglSRtavn 31 
                   + lg++R av+
  MMETSP1174-20130828|22929_1 105 ERVLGIGRLAVE 116
                  578*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 641.09
//
Query:       MMETSP1174-20130828|22934_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 370.42
//
Query:       MMETSP1174-20130828|22936_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-60  202.1   0.0    2.5e-60  201.9   0.0    1.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    6.2e-13   45.8   0.8      6e-06   22.8   0.0    2.1  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
     0.0012   15.6   0.5     0.0034   14.1   0.0    1.7  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
     0.0016   15.2   0.0     0.0025   14.6   0.0    1.3  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
     0.0061   12.5   0.1      0.026   10.4   0.0    1.8  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
  ------ inclusion threshold ------
      0.015   11.8   0.0      0.025   11.1   0.0    1.3  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   3.6e-63   2.5e-60     266     441 ..       2     190 ..       1     191 [] 0.94

  Alignments for each domain:
  == domain 1    score: 201.9 bits;  conditional E-value: 3.6e-63
    TIGR01657 266 DavLlegscivnEsmltGEsvpvlKvpiee...eedsdeklqlkekskkhvLfgGTkvlqirpdeg..........dtkvlaiVvrTGFstskGqLvrsilypkprvfkfykdslkfilflavlaligfiyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePer 441
                  D+++l+gscivnE+mltGEsvp++K+p+ e   +++   +l++ ++ ++h++ gGT+v+q++   g          + +++ +V+rTGF +++G+L+r+il++ + v++ + ++++fi +l+++a+++++yvl e++k+e r++ kl l+++ i+t+vvPP+LP+els++vn++la+L+k  ++c+eP+r
  MMETSP1174-20130828|22936_1   2 DLLVLSGSCIVNEAMLTGESVPQRKEPLLEdvgNREAGARLDMVHD-SRHIILGGTQVVQHDERWGhasndirrspNHGCICLVLRTGFDSAQGKLMRTILFASEPVTAHSAEAFSFIGVLMIFAVAAAWYVLTEGLKDEaRNRFKLYLHCIMIVTSVVPPELPMELSLAVNNSLAALSKSLVYCTEPFR 190
                  99*************************9985554444444555554.99**************9999********988**************************************************************99999*******************************************98 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.8e-09     6e-06      69      95 ..       2      28 ..       1      42 [. 0.91
   2 !   21.7   0.3   1.9e-08   1.3e-05     135     195 ..     113     178 ..      91     188 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 8.8e-09
    TIGR01494 69 DgvllsgsaevdessLtGEsnpvekke 95
                 D+++lsgs++v+e++LtGEs+p+ k+ 
  MMETSP1174-20130828|22936_1  2 DLLVLSGSCIVNEAMLTGESVPQRKEP 28
                 9**********************9975 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 1.9e-08
    TIGR01494 135 lalifllallllallvfllvliel.....ktflkiilralillviaiPiaLpvavtialavgdkrl 195
                   a++f+ +l+++a++++++vl+e+     ++ +k+ l++++++++++P++Lp+++++a++++ ++l
  MMETSP1174-20130828|22936_1 113 EAFSFIGVLMIFAVAAAWYVLTEGlkdeaRNRFKLYLHCIMIVTSVVPPELPMELSLAVNNSLAAL 178
                  456788888899999888888765222225789*************************99976554 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.9e-06    0.0034      93     117 ..       4      28 ..       1      31 [. 0.90
   2 ?   -0.9   0.2      0.18   1.2e+02     166     217 ..     112     170 ..     101     181 .. 0.48

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 4.9e-06
    TIGR01525  93 eviegesevDesllTGEslpvekke 117
                   v++g++ v+e++lTGEs+p  k++
  MMETSP1174-20130828|22936_1   4 LVLSGSCIVNEAMLTGESVPQRKEP 28 
                  699*****************99975 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.18
    TIGR01525 166 adklasyfvplvlaialltflvwlalga.....lka...ealeravavLvvacPcaLgla 217
                  a+ ++   v++++a+a++ ++++  l+      + +   +++   ++v+    P  L la
  MMETSP1174-20130828|22936_1 112 AEAFSFIGVLMIFAVAAAWYVLTEGLKDearnrF-KlylHCIMIVTSVVPPELPMELSLA 170
                  4444444455555555555554443333543321.1223444444444444445555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-06    0.0025     111     136 ..       2      27 ..       1      34 [. 0.91

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-06
    TIGR01511 111 DGvvveGesevdeslltGEslpvkkk 136
                  D  v++G+  v+e++ltGEs+p++k+
  MMETSP1174-20130828|22936_1   2 DLLVLSGSCIVNEAMLTGESVPQRKE 27 
                  66899******************997 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.063        43     191     217 ..       2      27 ..       1      45 [. 0.84
   2 !   10.4   0.0   3.9e-05     0.026     235     339 ..      83     176 ..      75     184 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.063
    TIGR01517 191 DgvlisGlklkiDessltGesdpikkg 217
                  D +++sG ++ ++e+ ltGes p++k+
  MMETSP1174-20130828|22936_1   2 DLLVLSG-SCIVNEAMLTGESVPQRKE 27 
                  5567788.9999*********999987 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 3.9e-05
    TIGR01517 235 lvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavk 339
                  lv   G +s +Gkl+ ++  a+e+     +    a+  + +G+   ++++ v+   yv++   +d++ +    ++l++ ++ iv   vP  LP+   la+  +  
  MMETSP1174-20130828|22936_1  83 LVLRTGFDSAQGKLMRTILFASEPVT--AH---SAEAFSFIGV---LMIFAVAAAWYVLTEGLKDEARNR---FKLYLHCIMIVTSVVPPELPMELSLAVNNSLA 176
                  66677888999999988887766543..32...3555555555...468999999999988777766555...55666666666666777777665555544443 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.7e-05     0.025      87     112 ..       3      28 ..       1      40 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.7e-05
    TIGR01512  87 GevlsgessldesalTGEsvpvekak 112
                    vlsg++ ++e++lTGEsvp +k++
  MMETSP1174-20130828|22936_1   3 LLVLSGSCIVNEAMLTGESVPQRKEP 28 
                  5699*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 787.81
//
Query:       MMETSP1174-20130828|22930_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1130.83
//
Query:       MMETSP1174-20130828|22941_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|22942_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|22943_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|22945_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.46
# Mc/sec: 424.66
//
Query:       MMETSP1174-20130828|22949_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|22947_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   98.4   0.0    1.5e-24   84.7   0.0    2.0  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    1.3e-17   61.8   0.0    1.1e-12   45.8   0.0    2.2  2  TIGR00678 holB: DNA polymerase III, delta' subunit
    6.4e-06   22.8   0.1      0.011   12.1   0.0    2.5  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    5.2e-05   20.7   0.0    0.00021   18.7   0.0    2.1  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    7.4e-05   19.3   0.0    9.8e-05   18.9   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00029   17.4   0.0       0.14    8.5   0.0    2.1  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    0.00048   16.9   0.9      0.027   11.1   0.0    2.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00057   16.8   0.0      0.001   16.0   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0015   14.6   0.0     0.0023   14.1   0.0    1.1  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
  ------ inclusion threshold ------
      0.011   12.0   0.1        1.2    5.4   0.0    2.1  2  TIGR00602 rad24: checkpoint protein rad24
      0.016   11.5   0.0      0.027   10.7   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
      0.017   12.0   0.0       0.17    8.7   0.0    2.1  2  TIGR02881 spore_V_K: stage V sporulation protein K
      0.028   10.9   0.0      0.045   10.3   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase


Domain annotation for each model (and alignments):
>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.7e-05     0.018      26      60 ..       2      35 ..       1      44 [. 0.83
   2 !   84.7   0.0   4.9e-27   1.5e-24      89     291 ..      45     249 ..      38     293 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.7e-05
    TIGR02397 26 LknaikknkiahayLfsGprGvGKTsiArilAkal 60
                 L++ i+++k+ h  Lf+Gp G+GKTs+    Ak+l
  MMETSP1174-20130828|22947_1  2 LTKLINSGKLPH-LLFYGPPGTGKTSTMIAAAKTL 35
                 778899999999.69***********977777766 PP

  == domain 2    score: 84.7 bits;  conditional E-value: 4.9e-27
    TIGR02397  89 iEiDaAsnngvddirellen.vkyap.skskykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveellglvseekllelleailkkdleealklleel.lekgvdleklledliellrdll 291
                  +E++a   +g+  +r+ +++ +  +   +s  k  i+DE+  ++++a  aL +++E+  ++  F ++   ++ki+  + SRc rf+f  ++ ++++ rl++i+k e+++v + + +++ + ++G +R  l++l+ ++s+s +ki+   v  ++g    e++ ++l+ +l++d +e+l  +++l + kg+ l+ +l+dl++ll  + 
  MMETSP1174-20130828|22947_1  45 LELNASDDRGIGVVRNEIKSfAGTKQlFNSGVKLVILDEADSMTNDAQFALRRIIEKNTKSTRFCFICNYVNKIIPALQSRCTRFRFAPLQPAQVMGRLEDIVKAEGLDVTDGGKDALLSLSNGDMRRVLNVLQ-AASMSFQKIDSRAVYLCTGNPLPEDVQSILDWLLNDDFNEVLTRIRDLcTTKGYALSDILKDLTDLLVGME 249
                  68888888999888865555133333146778*****************************************************************************************************6.55666666*************************************997256899*********99987655 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05    0.0054       5      42 ..       3      39 ..       1      50 [. 0.84
   2 !   45.8   0.0   3.4e-15   1.1e-12      81     171 ..      58     150 ..      43     173 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
    TIGR00678  5 kralekgrlahAlLfaGpeGvGkealaealakallCek 42
                 ++ +++g+l+h lLf+Gp+G+Gk++++ a ak+l  ++
  MMETSP1174-20130828|22947_1  3 TKLINSGKLPH-LLFYGPPGTGKTSTMIAAAKTLYGSR 39
                 66778899999.89*******************99883 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 3.4e-15
    TIGR00678  81 vreleeelsktpl..esgrrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee 171
                  vr+ +++++ t++  +sg ++vi+++a+++++ a+ aL  ++E  +++t f +i++ ++k++p ++SRc r++++pl+ ++++  le+  k+e
  MMETSP1174-20130828|22947_1  58 VRNEIKSFAGTKQlfNSGVKLVILDEADSMTNDAQFALRRIIEKNTKSTRFCFICNYVNKIIPALQSRCTRFRFAPLQPAQVMGRLEDIVKAE 150
                  5644444433333127899**************************************************************999888764444 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00073      0.23     176     191 ..      12      27 ..       2      44 .. 0.77
   2 !   12.1   0.0   3.3e-05     0.011     335     396 ..     116     178 ..      96     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00073
    TIGR02903 176 qhiilyGppGvGktta 191
                   h+++yGppG Gkt++
  MMETSP1174-20130828|22947_1  12 PHLLFYGPPGTGKTST 27 
                  59***********975 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.3e-05
    TIGR02903 335 eeinpalrsrcaevffepltpedikeivlkaaeklnvklaegve.eliarytieGrkavnila 396
                  ++i pal+src+   f pl p++++  +++  +  +  +++g + +l++    + r+ +n+l 
  MMETSP1174-20130828|22947_1 116 NKIIPALQSRCTRFRFAPLQPAQVMGRLEDIVKAEGLDVTDGGKdALLSLSNGDMRRVLNVLQ 178
                  5799********************998888777666666666551456666677788888775 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.7e-07   0.00021      31     204 ..       4     179 ..       1     192 [. 0.79

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6.7e-07
    TIGR03420  31 elaeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll.......vevleg.....leqaelvalDdvealagereweealfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGleLpdevaeyllkrlsrdlrsLlelLda 204
                  +l ++ +  +l ++G++g+Gk+  + Aa++++     +++ l+l+   +         ++ ++g     ++ ++lv+lD+ +++++++  + al  ++ + ++s r   ++           +p L++R   ++ f+ +pl+ ++ +  L+  +++ Gl+++d   + ll+ ++ d+r  l++L+a
  MMETSP1174-20130828|22947_1   4 KLINSGKLPHLLFYGPPGTGKTSTMIAAAKTLYGSRYQSMTLELNASDDRGigvvrneIKSFAGtkqlfNSGVKLVILDEADSMTNDA--QFALRRIIEKNTKSTRFCFICNYVN-----KIIPALQSR---CTRFRFAPLQPAQVMGRLEDIVKAEGLDVTDGGKDALLSLSNGDMRRVLNVLQA 179
                  555666777899*******************************9998887733332222223331111135579**************..****999999999998777775443.....334778888...77899999999999999**************99999999999999988777764 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.1e-07   9.8e-05     313     338 ..      12      37 ..       5      89 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.1e-07
    TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG 338
                   Hll+ GPPGtGkt++  + ak + G
  MMETSP1174-20130828|22947_1  12 PHLLFYGPPGTGKTSTMIAAAKTLYG 37 
                  6***************9999998877 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0014      0.45      88     102 ..      13      27 ..       5      56 .. 0.78
   2 !    8.5   0.0   0.00045      0.14     245     309 ..     116     181 ..      94     193 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0014
    TIGR02902  88 hviiyGppGvGktaa 102
                  h++ yGppG Gkt++
  MMETSP1174-20130828|22947_1  13 HLLFYGPPGTGKTST 27 
                  99**********975 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00045
    TIGR02902 245 eeippalrsrcveiffrelekeeikeiakkaaekiglslekealeliakyas.nGreavnlvqlaa 309
                  ++i pal+src    f +l+  ++    +  ++  gl + + + + + + ++ + r ++n++q a+
  MMETSP1174-20130828|22947_1 116 NKIIPALQSRCTRFRFAPLQPAQVMGRLEDIVKAEGLDVTDGGKDALLSLSNgDMRRVLNVLQAAS 181
                  7899***************************************99988877625699******886 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   8.6e-05     0.027      33      65 ..       4      36 ..       1      64 [. 0.78
   2 ?    4.0   0.0     0.013       4.1     128     173 ..      74     112 ..      56     127 .. 0.71
   3 ?   -2.8   0.0       1.5   4.6e+02     237     253 ..     166     182 ..     161     192 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.6e-05
    TIGR02928 33 pilrgsrpsnvliyGktGtGKtavtkkvlkele 65
                 ++++  + + +l yG++GtGKt+++ +  k l 
  MMETSP1174-20130828|22947_1  4 KLINSGKLPHLLFYGPPGTGKTSTMIAAAKTLY 36
                 5666666678999***********999888775 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
    TIGR02928 128 edsliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigis 173
                  +++ +++LDE D++     ++  + L r+ e++  +       +i 
  MMETSP1174-20130828|22947_1  74 SGVKLVILDEADSM----TNDAQFALRRIIEKNTKS---TRFCFIC 112
                  56779*********....455568999984443333...3444444 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.5
    TIGR02928 237 ehGdaRkAidlLreage 253
                  ++Gd R+ +++L+ a  
  MMETSP1174-20130828|22947_1 166 SNGDMRRVLNVLQAASM 182
                  67999999999988765 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.3e-06     0.001      27      53 ..       8      34 ..       4      49 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.3e-06
    TIGR00635 27 kealdhvllyGPPGlGkttlakiiake 53
                 + +l h+l+yGPPG Gkt+     ak+
  MMETSP1174-20130828|22947_1  8 SGKLPHLLFYGPPGTGKTSTMIAAAKT 34
                 56899*************976555555 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.2e-06    0.0023     599     630 ..      14      45 ..       7      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.2e-06
    TIGR03345 599 FllvGpsGvGktetalalAellyGgeqnliti 630
                   l+ Gp G+Gkt t +a A +lyG++ + +t+
  MMETSP1174-20130828|22947_1  14 LLFYGPPGTGKTSTMIAAAKTLYGSRYQSMTL 45 
                  5889*********************9766655 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0056       1.8     112     134 ..      13      35 ..       2      62 .. 0.80
   2 ?    5.4   0.0    0.0037       1.2     266     331 ..     123     181 ..      88     192 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0056
    TIGR00602 112 iLLitGPsGCgKsTvikiLsKel 134
                   LL  GP+G gK+ ++   +K l
  MMETSP1174-20130828|22947_1  13 HLLFYGPPGTGKTSTMIAAAKTL 35 
                  599**********9998888876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0037
    TIGR00602 266 eprvsnikFNPiapTllkKfLkrIvtkeakkkkeKilvpkktsvedlcaaesGDiRSAInsLQfss 331
                  + r ++ +F P+ p  ++  L+ Iv+ e+    +  +         l++ ++GD+R  +n LQ  s
  MMETSP1174-20130828|22947_1 123 QSRCTRFRFAPLQPAQVMGRLEDIVKAEGLDVTDGGKD-------ALLSLSNGDMRRVLNVLQAAS 181
                  67999**********************99776665554.......678889999999999999655 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.6e-05     0.027     348     377 ..       6      35 ..       2      44 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.6e-05
    TIGR00763 348 rkklkgkilclvGPPGVGKtSlaksiAkal 377
                   ++ k + l ++GPPG GKtS   + Ak+l
  MMETSP1174-20130828|22947_1   6 INSGKLPHLLFYGPPGTGKTSTMIAAAKTL 35 
                  5566667799***********988888876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00053      0.17      40      64 ..       9      33 ..       3      51 .. 0.78
   2 ?    0.9   0.0      0.13        42     191     218 ..      80     107 ..      64     139 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00053
    TIGR02881 40 kqvlhmifkGnPGtGkttvarllak 64
                  +  h++f G PGtGkt+     ak
  MMETSP1174-20130828|22947_1  9 GKLPHLLFYGPPGTGKTSTMIAAAK 33
                 5567************986555554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.13
    TIGR02881 191 veereyklteeakaklreklakvksase 218
                  + +    +t++a+++lr+++ k+++ ++
  MMETSP1174-20130828|22947_1  80 ILDEADSMTNDAQFALRRIIEKNTKSTR 107
                  344455789999****999999986433 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014     0.045     219     241 ..      14      36 ..       9      51 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00014
    TIGR03689 219 vllyGPPGcGktliakavansla 241
                  +l+yGPPG+Gkt    a a++l 
  MMETSP1174-20130828|22947_1  14 LLFYGPPGTGKTSTMIAAAKTLY 36 
                  799********866666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1059.48
//
Query:       MMETSP1174-20130828|22953_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 837.62
//
Query:       MMETSP1174-20130828|22955_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1503.06
//
Query:       MMETSP1174-20130828|22956_1  [L=1074]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 2674.65
//
Query:       MMETSP1174-20130828|22968_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 586.03
//
Query:       MMETSP1174-20130828|22971_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 609.88
//
Query:       MMETSP1174-20130828|22975_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|22976_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|22977_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 635.50
//
Query:       MMETSP1174-20130828|22973_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1686.99
//
Query:       MMETSP1174-20130828|22982_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 806.60
//
Query:       MMETSP1174-20130828|22978_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|22985_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|22988_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|22990_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1174-20130828|22992_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|22989_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-90  301.2   0.0    2.5e-90  300.9   0.0    1.0  1  TIGR00555 panK_eukar: pantothenate kinase


Domain annotation for each model (and alignments):
>> TIGR00555  panK_eukar: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.0     6e-94   2.5e-90      18     303 ..      29     330 ..      17     331 .. 0.96

  Alignments for each domain:
  == domain 1    score: 300.9 bits;  conditional E-value: 6e-94
    TIGR00555  18 saeeeknrlvfktvetekidkvieflkeaikehkrietlkaTGGgafklaellkekleiklskldElealieGlefllkeevkeaftyedddkervkqkks................kdiypyllvNiGtGvSilkvdskdnyeRvgGtslGGGtllGLgkLltkietfdellelakkGdrkevDllVkdiYgtdyekiglkssliAssfgkvls.kekdesfkkedilksllvlisnnigqiayllakeenikrivfiGsflrnnlllmkvlssaiefwskGelkalflkhegylGAlGall 303
                  +a +  ++l f  +et++++kv+ ++ ++    + i tl +TGGg+fk++e+l++ l+i +  +dE+e+l++Glef +++   e++ty+  + + +  +++                ++  p+llv iG+GvSi++vd+++ +eRv+G+s+GGGt+ GL+ L++++++fdell la++G+++e D+lV+diYg +y k+gl+ss++Assfgk+++  +  es  +ed +++ll++++nnigq+ayl+a ++++++i+fiG+flr n+++ + ls+ai++ws  +++alfl+hegy+GA+Ga++
  MMETSP1174-20130828|22989_1  29 TAADLGGKLNFLLFETQHLEKVMALMGTHRL-NRVILTLGCTGGGSFKYEEKLRNDLNIDIVSIDEMESLVRGLEFAISNVIGECYTYKPTTWPALSSQTPggekdwnlkvdldgmtSAEFPFLLVSIGSGVSIIRVDGPGRFERVSGSSIGGGTFFGLARLISGCSSFDELLALAERGNHEECDMLVGDIYGRQYGKVGLSSSVVASSFGKLMNcDTPMESTLPEDRVRALLMMVTNNIGQVAYLNALQQKTSHIYFIGNFLRRNQISCQRLSYAIDYWSGTKMEALFLRHEGYFGAMGAFM 330
                  46667899******************99886.67899************************************************************9999999*********99988999********************************************************************************************99566778999*********************************************************999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1133.75
//
Query:       MMETSP1174-20130828|22995_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1200.28
//
Query:       MMETSP1174-20130828|22994_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1310.23
//
Query:       MMETSP1174-20130828|22998_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 692.94
//
Query:       MMETSP1174-20130828|22997_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-07   25.0   0.0    9.7e-07   24.8   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0066   13.8   0.0      0.009   13.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.7e-10   9.7e-07      20     191 ..      64     235 ..      46     248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.7e-10
    TIGR03903  20 rlvaRFrReialCarL.shPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaae.tgrLmlqvLDalaaahdaG..vvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv........taksDlYaWGLivleCLtGkrvvqG 191
                  rl a F  e ++ +r+ +h  i  +l   e++ g+   + e+ +   l + La++  L       r+ lq+ ++++  h++   ++hRDLk  ni++   d + +akv DFG++  ++           r t + G+ ++ aPe +   p          +  D++++ +i+ e +t k+  +G
  MMETSP1174-20130828|22997_1  64 RLLADFSSEAKMLKRVgHHQSILTMLGATECPLGI---ITEFCAHGNLMDALASKPDLFDWPlKRRIALQIANGVSFLHSQDpvILHRDLKSLNILL---DSDLNAKVSDFGLSRFGATS------VFDRMTAMCGTYHWMAPEVMNVAPCgsgeethyGPPVDVFSFAIILWELVTKKVPYDG 235
                  67788999999988884678899999999999865...5799999999999999999987651567999*******9998854499*********98...67889********9987543......3456677899999999998865443111111124667888888888887777766665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.4e-06     0.009      94     139 ..     126     174 ..      72     184 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-06
    TIGR03724  94 ellkevGelvgklHkag..ivhgDlttsNiivk.ddklyliDfGLgkks 139
                  +++ ++++ v+ lH+++  i+h Dl   Ni+++ d ++ + DfGL+++ 
  MMETSP1174-20130828|22997_1 126 RIALQIANGVSFLHSQDpvILHRDLKSLNILLDsDLNAKVSDFGLSRFG 174
                  6778899999****9977799***********625578899*****974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1294.34
//
Query:       MMETSP1174-20130828|22996_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   14.9   0.0     0.0029   14.4   0.0    1.2  1  TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family


Domain annotation for each model (and alignments):
>> TIGR02500  type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.1e-07    0.0029     310     386 ..     253     323 ..     234     331 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.1e-07
    TIGR02500 310 iqlsGdL.daeqrealdevlaalrqrlqvipkevvqsapaadkkqqelPapvvsigglgplryvtladGqRlfeGgmL 386
                   +++G+L d+e r+ l++v+++l+qr    + ++v      +k+  +++  v + + +g+ + + + dG R+++G+++
  MMETSP1174-20130828|22996_1 253 YTINGSLtDSEVRSDLRQVVNDLKQR----AALYVSTCGSGSKA--HADVVVNRGA-NGKGPRTLVYDGHRYMVGSRI 323
                  57889985678899************....56777777755555..7777666666.******************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1094.41
//
Query:       MMETSP1174-20130828|23001_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 392.40
//
Query:       MMETSP1174-20130828|23003_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.1   0.0     0.0052   13.7   0.0    1.0  1  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-06    0.0052     409     449 ..      95     135 ..      84     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-06
    TIGR00435 409 vqagsnddelgeledlieersearkkkelkkaDkiRdellk 449
                  ++ +s+  ++g +++l+ er +ark+ ++++aD iRd+l+ 
  MMETSP1174-20130828|23003_1  95 TSRDSSTVNEGAVNSLLGERLQARKTGDFDRADFIRDQLMT 135
                  44555556789999************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 679.50
//
Query:       MMETSP1174-20130828|23005_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 582.30
//
Query:       MMETSP1174-20130828|23007_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-48  161.5   0.0    6.2e-48  161.4   0.0    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    1.1e-15   54.8   0.0    7.1e-13   45.6   0.0    2.0  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
      5e-15   52.1   0.0    5.6e-15   52.0   0.0    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    8.7e-11   38.4   0.0    9.5e-11   38.3   0.0    1.0  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.5e-10   37.4   0.0    1.8e-10   37.2   0.0    1.0  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
      2e-08   30.4   0.0    4.4e-08   29.3   0.0    1.4  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    3.6e-08   29.3   0.0    4.3e-08   29.0   0.0    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    3.9e-08   30.4   0.0    1.6e-07   28.4   0.0    1.7  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    1.2e-07   28.1   0.0    1.2e-07   28.1   0.0    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    1.4e-06   25.1   0.0    1.8e-06   24.7   0.0    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
      4e-06   22.5   0.0    1.7e-05   20.3   0.0    1.7  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    4.4e-06   23.7   0.0    5.2e-06   23.4   0.0    1.1  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      0.005   12.8   0.0     0.0057   12.6   0.0    1.0  1  TIGR01497 kdpB: K+-transporting ATPase, B subunit


Domain annotation for each model (and alignments):
>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0     2e-50   6.2e-48     412     536 ..       4     132 ..       1     134 [] 0.95

  Alignments for each domain:
  == domain 1    score: 161.4 bits;  conditional E-value: 2e-50
    TIGR01647 412 lAerGlRaLgvava..dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedklkse..eleelvekadGFAevfPeHkyeivealqkrghl 536
                  l erG+R+L+va++  +++g wel+gll++lDPPr+Dtk+ti+ra++ gvevkm+tGDhl+iaketar+lg+gt+i +a kl+k  ++ k + +  ++   ve++ GFA+vfPeHk+ ive+l++ g+ 
  MMETSP1174-20130828|23007_1   4 LGERGIRSLAVAKTkgSADGPWELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTHIENAGKLPKLGEDRKAPANlmDFFSYVEETSGFAQVFPEHKFLIVEVLRRGGYK 132
                  789*********99777899****************************************************************999989988888999*************************99985 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.3e-15   7.1e-13     305     369 ..       8      79 ..       2      86 .. 0.82
   2 !    7.6   0.0   0.00078      0.24     365     387 ..     110     132 ..     104     134 .] 0.84

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2.3e-15
    TIGR01494 305 glrtlavaske.......ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfarv 369
                  g r lava+ +       el+Gll++ dp+r+d+k+ti+  ++ g++v+m+TGD+   Ak++a++lg+ ++ 
  MMETSP1174-20130828|23007_1   8 GIRSLAVAKTKgsadgpwELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTHI 79 
                  66666666655444444479***********************************************87665 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00078
    TIGR01494 365 lfarvsPeqKaeivellkkkgev 387
                   fa+v Pe+K  ive l++ g+ 
  MMETSP1174-20130828|23007_1 110 GFAQVFPEHKFLIVEVLRRGGYK 132
                  49****************97765 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   1.8e-17   5.6e-15     471     587 ..       4     130 ..       1     133 [. 0.80

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 1.8e-17
    TIGR01522 471 maseGlrvlalasktekd...lvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavksskeGe..kl..delddqqlse...vvdkvavfaraspehklkivkalqkrG 587
                  +++ G+r la+a+++ +      + Gll + dpprpd k ++++    Gv+v+mitGd    a + ar+lG+  + ++ G+  kl  d     +l +    v++ + fa+  pehk+ iv+ l++ G
  MMETSP1174-20130828|23007_1   4 LGERGIRSLAVAKTKGSAdgpWELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTHIENAGKlpKLgeDRKAPANLMDffsYVEETSGFAQVFPEHKFLIVEVLRRGG 130
                  5789********998775223578999999******************************************99988887533441122223345541115788899****************9977 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     3e-13   9.5e-11     437     505 ..       4      75 ..       1      94 [. 0.87

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3e-13
    TIGR01116 437 lssealrclalavkeesk...lifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGi 505
                  l++ ++r+la+a  + s      +iG+++++dPPr++ +d+i++ r+ G++v +itGd+   a+  ar++G+
  MMETSP1174-20130828|23007_1   4 LGERGIRSLAVAKTKGSAdgpWELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGM 75 
                  78999*******887664222578***********************************9999999999997 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   5.7e-13   1.8e-10     476     603 ..       6     131 ..       1     133 [. 0.77

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.7e-13
    TIGR01524 476 rqGlrvvavatkklkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandvllGadieelsde........elaaevekravfarltplqkerivtllkkeGh 603
                   +G+r +ava  k++a +            + G+l+fldpp+  tk++i   ++ g++vk++tGd  ++++   +++G+ ++    G ++ +l ++        ++ + ve ++ fa++ p +k  iv++l++ G+
  MMETSP1174-20130828|23007_1   6 ERGIRSLAVAKTKGSADGP---------WELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTHIENAG-KLPKLGEDrkapanlmDFFSYVEETSGFAQVFPEHKFLIVEVLRRGGY 131
                  5677777777777666655.........3356**********************************************998744333.44444443111111114557899**********************996 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.4e-10   4.4e-08     559     607 ..      27      75 ..      21      84 .. 0.93
   2 ?   -2.2   0.0      0.44   1.4e+02     654     682 ..     100     129 ..      93     131 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.4e-10
    TIGR01106 559 fvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgi 607
                  ++gll+++dppr    d++ + r  g+ v m+tgdh + ak  a+ +g+
  MMETSP1174-20130828|23007_1  27 LIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGM 75 
                  69******************************************99987 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.44
    TIGR01106 654 eilkehtei.vfartspqqkliivegcqrq 682
                  + + + +e   fa+  p+ k++ive  +r 
  MMETSP1174-20130828|23007_1 100 DFFSYVEETsGFAQVFPEHKFLIVEVLRRG 129
                  555555554259999*********998875 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.4e-10   4.3e-08     573     631 ..      17      75 ..       9      83 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.4e-10
    TIGR01523 573 nrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgi 631
                  ++  a+   ++++l+   dppr ++k ++++    g++v+m+tgd+   ak  ar++g+
  MMETSP1174-20130828|23007_1  17 TKGSADGPWELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGM 75 
                  5667888899*********************************************9996 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0     5e-10   1.6e-07     377     426 ..      26      75 ..      10      88 .. 0.88
   2 ?   -0.4   0.0      0.26        82     431     448 ..     111     128 ..     103     133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 5e-10
    TIGR01525 377 ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi 426
                  el+gl+++ D++rp++k++i++ +  g ev ++tGD+   a++ A++lg+
  MMETSP1174-20130828|23007_1  26 ELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGM 75 
                  89*********************9999**********************6 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.26
    TIGR01525 431 vaellPedKlakvkklqe 448
                  +a++ Pe+K+ +v+ l++
  MMETSP1174-20130828|23007_1 111 FAQVFPEHKFLIVEVLRR 128
                  79***********99984 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.8e-10   1.2e-07     510     586 ..       7      78 ..       1     127 [. 0.83

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.8e-10
    TIGR01517 510 ealRtislaykdelpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgilta 586
                  +++R++++a +       s ++   li+++ + dP r++ ++++++ +  G+ v+m+tGD l  ak  ar+ g+ t+
  MMETSP1174-20130828|23007_1   7 RGIRSLAVAKTK-----GSADGPWELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTH 78 
                  566666655443.....334445779*******************************************99887654 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-09   1.8e-06     315     370 ..      26      80 ..      15      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.8e-09
    TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelGdevhae 370
                  +l+gl+++ D +r+d++++i + +  gv ++ ++tGD+   a++ a++lG   h e
  MMETSP1174-20130828|23007_1  26 ELIGLLTFLDPPRPDTKDTIDRARDFGV-EVKMITGDHLLIAKETARQLGMGTHIE 80 
                  589************************8.56*******************988865 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.5e-08   1.7e-05     648     697 ..      26      75 ..      20      90 .. 0.94
   2 ?   -0.1   0.0     0.084        26     779     805 ..     107     133 ..      98     134 .] 0.89

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 5.5e-08
    TIGR01657 648 eflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgi 697
                  e+ Gll +  + +pdtk++i   ++  ++v+mitGD ll a + ar++g+
  MMETSP1174-20130828|23007_1  26 ELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGM 75 
                  689*********************************************98 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.084
    TIGR01657 779 kvkVfARvaPeqKeelvetlkkldytv 805
                  +++ fA v Pe K  +ve l+  +y++
  MMETSP1174-20130828|23007_1 107 ETSGFAQVFPEHKFLIVEVLRRGGYKT 133
                  5667*****************999987 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.7e-08   5.2e-06     359     409 ..      26      76 ..       9      91 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.7e-08
    TIGR01511 359 elaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgie 409
                  el+++l+  d ++p++k++i++ +  g+ev ++tGD    ak++A++lg+ 
  MMETSP1174-20130828|23007_1  26 ELIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMG 76 
                  688899999****************************************74 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.8e-05    0.0057     437     494 ..      27      84 ..      16      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
    TIGR01497 437 iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGvddfiaeatp 494
                  ++G++ + d  ++  k+ +++ r +G+   m+tGd  l a   a++ G+   i +a  
  MMETSP1174-20130828|23007_1  27 LIGLLTFLDPPRPDTKDTIDRARDFGVEVKMITGDHLLIAKETARQLGMGTHIENAGK 84 
                  6677888888899999********************************9999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.51
# Mc/sec: 346.79
//
Query:       MMETSP1174-20130828|23006_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1222.33
//
Query:       MMETSP1174-20130828|23011_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.51
# Mc/sec: 204.45
//
Query:       MMETSP1174-20130828|23009_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 849.47
//
Query:       MMETSP1174-20130828|23013_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 632.95
//
Query:       MMETSP1174-20130828|23020_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 221.55
//
Query:       MMETSP1174-20130828|23021_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 826.67
//
Query:       MMETSP1174-20130828|23027_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 816.25
//
Query:       MMETSP1174-20130828|23028_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.6   0.0      0.051   11.0   0.0    1.3  1  TIGR01644 phage_P2_V: phage baseplate assembly protein V


Domain annotation for each model (and alignments):
>> TIGR01644  phage_P2_V: phage baseplate assembly protein V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.2e-05     0.051       2      44 ..      10      52 ..       9      64 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
    TIGR01644  2 arglrnlirrgvvaevddaaarvrveqgelltgwlnwlverag 44
                 +rgl++li + +  + d+a+ar +v+  e++tg  ++ +++  
  MMETSP1174-20130828|23028_1 10 FRGLTELILESKMRACDRAQARAQVLEEEMMTGSYPQGEQQQN 52
                 79*******************************9988766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 746.03
//
Query:       MMETSP1174-20130828|23029_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 641.61
//
Query:       MMETSP1174-20130828|23032_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.59
# Mc/sec: 123.04
//
Query:       MMETSP1174-20130828|23031_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|23038_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1174-20130828|23039_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|23041_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-25   86.1   0.2    4.2e-25   86.0   0.1    1.0  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1     1e-28   4.2e-25     314     392 ..       1      79 [.       1      82 [] 0.95

  Alignments for each domain:
  == domain 1    score: 86.0 bits;  conditional E-value: 1e-28
    TIGR00575 314 vevqvgrtgaitpvaklepVelaGttvsratLhNedeiekkdirigdtVvvskaGdvIPkvvevvkekRtaeekeikip 392
                  ++++ gr+g++tpva+l pV+l+G++++ra+Lh ++ +++ d+r+gdtVvv++aGdvIP+vv++v++  t e+ ++++ 
  MMETSP1174-20130828|23041_1   1 IVLSLGRSGKVTPVANLRPVNLGGVVIRRASLHSAEWLHETDVRVGDTVVVHRAGDVIPQVVRMVERPLTSESVPWRMD 79 
                  67899*************************************************************9999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 373.21
//
Query:       MMETSP1174-20130828|23042_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1174-20130828|23047_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 800.93
//
Query:       MMETSP1174-20130828|23052_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 761.14
//
Query:       MMETSP1174-20130828|23049_1  [L=1237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.54
# Mc/sec: 3023.53
//
Query:       MMETSP1174-20130828|23057_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 637.95
//
Query:       MMETSP1174-20130828|23061_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 518.53
//
Query:       MMETSP1174-20130828|23062_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-50  170.3   0.0    2.4e-49  165.9   0.0    2.1  1  TIGR00071 hisT_truA: tRNA pseudouridine synthase A
    0.00011   19.8   0.0    0.00023   18.8   0.0    1.4  1  TIGR03936 sam_1_link_chp: radical SAM-linked protein


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   1.2e-52   2.4e-49       1     208 [.      59     362 ..      59     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: 165.9 bits;  conditional E-value: 1.2e-52
    TIGR00071   1 rkialkiaYdGsnyhGmqvqpekktvegelekaLeevga.......kkkkf.vmsagRTDkGVhAlgqvislki..kkeiedkklvaklnallpedirvkalekVnkkFdaRfsassrkYryilnnkk...............................................................................yr.saldlekleaaakellGkhdFsnFtkakdskeksairtikkikvse......seeliilkiiGssFllhqvRkivaalvlvgreklpveevskl 208
                  rk++l ++Y+G++y+Gmq++p ++++e ele a++++g        + +k+  ++a+RTDkGV+ ++qv+slk+  +++   +  v  +n +lp++i+v +  kV  +Fda+ s+s+r+Yry++                                                                                   yr ++  l+ ++ a + + G+h+F+n+t+ k++++++++r+i+++ + +       +e+++++i+G+sFllhq+Rk+va+++++++++++  + +  
  MMETSP1174-20130828|23062_1  59 RKVVLLVGYCGAGYNGMQINPGVRSIEMELERAIFRAGGiartnfgNLQKVgWSRAARTDKGVSSVAQVVSLKLgvPADSSMETTVERINSHLPKGIKVFECIKVARSFDAKNSCSKRRYRYLMPSFLlmppelrrglldrakmgrgipdksvetlqsngaeeceqavasedktadhldqpvrrakkeqwseppmdsfeaaapeaaaYRvTPNLLDGFRLALSLFEGTHHFHNYTSSKKFSDPQSQRNIHSVSCGDpfvredGREWVVVTIMGQSFLLHQIRKMVATAIDLAHKQRSEATAAME 362
                  799***********************************9*******5555555*******************9722445556777788******************************777777766567777777777777777777777777777777777777777777777777777777778888888888888888888899989999****************************************9999999999***************************9999887665443 PP

>> TIGR03936  sam_1_link_chp: radical SAM-linked protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-07   0.00023      56     115 ..     120     180 ..     112     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.1e-07
    TIGR03936  56 GveseaEyvdlelt..eeldpeevlerLnaalPeglevleveevpdkakslmalveaaeYrv 115
                  Gv+s a +v l+l   ++ ++e  +er+n++lP+g++v+e+ +v + +  + + +++ +Yr 
  MMETSP1174-20130828|23062_1 120 GVSSVAQVVSLKLGvpADSSMETTVERINSHLPKGIKVFECIKVAR-SFDAKNSCSKRRYRY 180
                  899999999999986678999***********************97.566666666667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1411.48
//
Query:       MMETSP1174-20130828|23069_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    3.2  15.7          7    3.1  10.9    1.0  1  TIGR03154 sulfolob_CbsA: cytochrome b558/566, subunit A


Domain annotation for each model (and alignments):
>> TIGR03154  sulfolob_CbsA: cytochrome b558/566, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  10.9    0.0017         7     420     458 ..       6      44 ..       2      46 .] 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0017
    TIGR03154 420 tttstssvssvttisaaipsttvyvtivgvviaivalvi 458
                   tt+++s++  tt+ + i +tt+  t + +v ai+ l+i
  MMETSP1174-20130828|23069_1   6 ITTTATSITILTTTGTIIVTTTIATTTITIVSAIILLLI 44 
                  4667777999999*********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       394  (0.0960507); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 202.38
//
Query:       MMETSP1174-20130828|23070_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|23071_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1067.56
//
Query:       MMETSP1174-20130828|23074_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   14.9   0.0     0.0021   14.9   0.0    1.0  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
      0.009   12.7   0.0     0.0093   12.6   0.0    1.0  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06    0.0021     303     341 ..      18      56 ..       7      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1e-06
    TIGR01265 303 kikvlkenaelvyeelkeipgltcvkPegamyllvklel 341
                  + + l++ ae++ e l+ i+g++c k egamy + +++l
  MMETSP1174-20130828|23074_1  18 IFEGLRRRAEMLVEGLNRIEGIDCEKTEGAMYAFPRVSL 56 
                  5677999**************************988876 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.5e-06    0.0093     303     341 ..      18      56 ..      10      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.5e-06
    TIGR01264 303 vvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel 341
                  + + l+  a+++ e l+ + G++  k +Gamy + +++l
  MMETSP1174-20130828|23074_1  18 IFEGLRRRAEMLVEGLNRIEGIDCEKTEGAMYAFPRVSL 56 
                  66778999**************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 289.52
//
Query:       MMETSP1174-20130828|23075_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.8   0.0      0.032   11.2   0.0    1.2  1  TIGR02371 ala_DH_arch: alanine dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02371  ala_DH_arch: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-06     0.032      40     134 ..     153     249 ..     145     273 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.7e-06
    TIGR02371  40 kvylffevynGdlrvmpayleelelaGvkivnvhpgnpdrn..lptv.maliilvspetGfpvavmdgtyltdlrtGaaGGvaakylarkdssvlGli 134
                  k+ l   + + ++   p y     la +  vnv p +pdr   +p+v +  ++  +p t +   v d+  + ++++ a+  v+ k l+ k+ +++ l 
  MMETSP1174-20130828|23075_1 153 KSTLSVVQDHYEVLGRPEYNLRGRLAALASVNVSPHDPDRArrFPSVnLEDLESRDPATLL-SQVDDAVEVIEMKAKASPAVSLKSLSPKELHRIMLD 249
                  5555555555555666888777799**************9776898823445555666644.357899**********************99998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1145.91
//
Query:       MMETSP1174-20130828|23080_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.45
# Mc/sec: 199.45
//
Query:       MMETSP1174-20130828|23081_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|23079_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1070.58
//
Query:       MMETSP1174-20130828|23083_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|23087_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 898.26
//
Query:       MMETSP1174-20130828|23085_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   14.1   0.0     0.0078   13.6   0.0    1.2  1  TIGR02269 TIGR02269: Myxococcus xanthus paralogous lipoprotein family TIGR02269


Domain annotation for each model (and alignments):
>> TIGR02269  TIGR02269: Myxococcus xanthus paralogous lipoprotein family TIGR02269
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.9e-06    0.0078     151     198 ..     112     160 ..      79     164 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-06
    TIGR02269 151 viprevhrrih.sGkgrGGaWneaWrdfarrqsgasseeiyrhageLif 198
                  ++pr++ rri  sG+g G    ++W+   rr+ g +++e+ r    Lif
  MMETSP1174-20130828|23085_1 112 LVPRDIFRRIDtSGNGDGTITIDEWAICLRRRLGLTEDEVLRDDLSLIF 160
                  69********64899****************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.50
# Mc/sec: 586.03
//
Query:       MMETSP1174-20130828|23086_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1052.25
//
Query:       MMETSP1174-20130828|23088_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.6   0.0      0.025   12.3   0.0    1.1  1  TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase


Domain annotation for each model (and alignments):
>> TIGR03135  malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-06     0.025      80     124 ..      46      89 ..      38     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-06
    TIGR03135  80 rappaLadvlgeaplawrpalarLralldalgvdvgvfGSlawql 124
                   ++p+L  + +e+p  wr+a  +L+al+++  + ++v G++a+  
  MMETSP1174-20130828|23088_1  46 DHFPQLDAIGTEDPYLWRDARGNLHALFHH-MAGCYVAGGHAFTS 89 
                  6799*********************99875.89**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 549.07
//
Query:       MMETSP1174-20130828|23084_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-132  438.6   0.0    1.5e-67  226.0   0.0    2.0  2  TIGR00345 arsA: arsenite-activated ATPase ArsA
    1.6e-13   48.6   2.5      2e-07   28.6   0.1    2.6  2  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
      7e-12   43.1  15.5    1.1e-05   22.7   0.5    3.9  4  TIGR01968 minD_bact: septum site-determining protein MinD
    4.4e-11   40.3   9.5    3.8e-06   24.1   0.5    3.2  3  TIGR01969 minD_arch: cell division ATPase MinD
    8.1e-11   39.6   1.7    9.9e-05   19.7   0.1    2.5  2  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
    1.5e-08   32.3   0.5     0.0031   14.9   0.0    4.4  4  TIGR01007 eps_fam: capsular exopolysaccharide family
    1.9e-07   28.1   1.6     0.0015   15.2   0.1    2.6  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
    4.9e-07   27.2   0.5     0.0015   15.8   0.0    2.3  2  TIGR01287 nifH: nitrogenase iron protein
    1.1e-05   22.7   0.3      0.019   12.0   0.0    2.4  2  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
     0.0004   17.4  16.3    0.00072   16.6   0.6    3.3  3  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
     0.0032   14.6   0.4       0.34    7.9   0.0    2.9  3  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0035   14.3   3.2      0.055   10.4   0.1    2.4  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0057   13.6   0.1       0.24    8.2   0.0    2.2  2  TIGR00991 3a0901s02IAP34: GTP-binding protein
  ------ inclusion threshold ------
      0.018   11.9   0.1       0.38    7.5   0.0    2.3  2  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
       0.52    8.1   5.4       0.63    7.8   0.4    2.9  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.0   0.0   5.6e-70   1.5e-67       1     295 [.      23     347 ..      23     349 .. 0.83
   2 !  210.6   0.0   2.8e-65   7.6e-63       1     297 [.     374     687 ..     374     688 .. 0.91

  Alignments for each domain:
  == domain 1    score: 226.0 bits;  conditional E-value: 5.6e-70
    TIGR00345   1 ffgGKGGVGKTtisaatairlaesgkkvllvSTDPAhslsdvfeeelGkeark...vkgv.enLsavEiDpqaaleeyra........klkeqikenlslgldeleeqleeaals..........PGideiaafdellkelkeaene....fDvvifDtAPTGhtlrlLqlpevlskflekliklkeklgellkll..........mgkee..eeevlekleelkeqiealrevlsDpertsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlpeeaqdeflkarkelqkkylkeieekfedl.evaevpllkeevvGleaLeklsk 295
                  f+gGKGGVGKT+ s+a+a+ la  g ++l+vS DPAhsl+dv+ ++l ++ ++   + g  +nL+a+EiD++a l+e+ +        +++++i  +  ++     + l    l           PG+de +a++++ +     +      fD vi+DtAPTGh+lrlL+ pe l+ fl+kl   ++kl ++l l               +   + ++ + ++ + qi+ lr+ l+Dp+ t+fv+V+ p  l++ E+eR+v +L+  g+++ ++ivN+vl  +++ +f    k+ q  ++++++ +++ +  v++vp++ +e+vG  aL+ +++
  MMETSP1174-20130828|23084_1  23 FVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHSLGDVLATDLPRGSNNavpIFGCdDNLYAMEIDAEASLKEFTDaiagfdlaAVAKEIGGQAGADF---ASNL---GLDefagilrnppPGVDELVALNAVVRLARGTDASgmqsFDRVIIDTAPTGHALRLLSAPEFLEDFLDKLLSFRSKLDSVLGLAttmlglnagaL---TakLDAAVIAADNYRTQIKSLRDLLTDPTATQFVVVAGPTALAVAETERLVSSLEDSGVTTRSLIVNKVLGANTNEKFTDQLKKGQTSAMERVDSRLSKKvDVTSVPFFDTELVGTYALRYMAQ 347
                  89*********************************************776554212444348******************4444433223333333333332...2222...2224446678999************99987666333467****************************************9999888888775422...24445566666779*********************************************************************************9986526999*************998776 PP

  == domain 2    score: 210.6 bits;  conditional E-value: 2.8e-65
    TIGR00345   1 ffgGKGGVGKTtisaatairlaesgkkvllvSTDPAhslsdvfeeel..G....kearkvkgvenLsavEiDpqaaleeyraklkeqikenlslgl.deleeqleeaals..........PGideiaafdellkelkeaene.fDvvifDtAPTGhtlrlLqlpevlskflekliklkeklgellkllmgkeeeeevlekleelkeqiealrevlsDpertsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlpeeaqdeflkarkelqkkylkeieekf..edlevaevpllkeevvGleaLeklsktl 297
                  ++gGKGGVGKT+ saa+++ +a  g+ +++vSTDPAhsl+d+++ +l  G    +   +++g   L+a+E+D +  + e+++ +k++i++ +   + + l++ql ++ l           PG+de +a+ ++l  l + +++ f  +i+DtAPTGhtlrlL lp  l+ +l++++ lk++l+ + k++ g e    + ++l++l+ q+ +l+++l D++r +fv+V+i  +++l E+eR+v++L++ ++ v  v+vNq+l +++ d +l+++ + q + l ++e+    +dl+ +++p l +e++ +  L+ + ++l
  MMETSP1174-20130828|23084_1 374 LVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHSLGDALGLKLvpGevtpISDAALSGEGSLYALEVDVDSSVAEFQSLVKDAIQSAEAGSQdSFLGQQLGQLNLGdltsvldtppPGVDELVALAKVLALLRDDSKTrFSRIILDTAPTGHTLRLLTLPSFLGDLLDRVMALKSRLQGFFKSSSGTEP---ARDRLRDLQVQMFELEDILRDENRCEFVVVTIATEVALAETERLVESLISEEVAVGNVVVNQLLDTTTTDAYLERIVRGQDVCLGRLEKIAqdNDLVLTSMPWLDVEARSVYGLRAFGQML 687
                  69*******************************************99443222234567889999************************9999998788999999999888889************************99556*********************************************77666...778888888******************************************************************99999998877775441168999***********999999988876 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   5.5e-07   0.00015       6      51 ..      23      68 ..      20      77 .. 0.88
   2 !   28.6   0.1   7.1e-10     2e-07       2      55 ..     370     423 ..     370     514 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.5e-07
    TIGR03371  6 ivsvkGGvGkTtltAnLasalklsgeevlaidldpqnlLrlhfgld 51
                  v+ kGGvGkT+ + ++a+ l+  g ++l++ +dp+  L+  ++ d
  MMETSP1174-20130828|23084_1 23 FVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHSLGDVLATD 68
                 6899*******************************99998666655 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 7.1e-10
    TIGR03371   2 kviaivsvkGGvGkTtltAnLasalklsgeevlaidldpqnlLrlhfgldlser 55 
                  +++++v+ kGGvGkT+ +A+L++  +  g++++++ +dp+  L+  +gl+l   
  MMETSP1174-20130828|23084_1 370 QRLVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHSLGDALGLKLVPG 423
                  5899***************************************99999987544 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   3.3e-07     9e-05       5      39 ..      22      56 ..      20      66 .. 0.90
   2 !    9.5   0.0   0.00045      0.12     134     173 ..     253     292 ..     249     326 .. 0.87
   3 !   22.7   0.5     4e-08   1.1e-05       4      39 ..     372     407 ..     369     418 .. 0.92
   4 ?   -2.3   0.2       1.8   4.8e+02     138     174 ..     594     630 ..     589     648 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.3e-07
    TIGR01968  5 vvtsGkGGvGkttttanlgtalaklgkkvvlvdad 39
                 v   GkGGvGkt  +++++++la  g ++ +v +d
  MMETSP1174-20130828|23084_1 22 VFVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVD 56
                 5678**************************99988 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00045
    TIGR01968 134 adeaivvttPevsavrdadrviGlleakeieeiklivnrl 173
                  a + +vv+ P   av +++r++  le+++++  +livn++
  MMETSP1174-20130828|23084_1 253 ATQFVVVAGPTALAVAETERLVSSLEDSGVTTRSLIVNKV 292
                  77899*********************************97 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 4e-08
    TIGR01968   4 ivvtsGkGGvGkttttanlgtalaklgkkvvlvdad 39 
                  +v+  GkGGvGkt t+a+lg+  a  g+ +++v +d
  MMETSP1174-20130828|23084_1 372 LVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTD 407
                  78899****************************998 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 1.8
    TIGR01968 138 ivvttPevsavrdadrviGlleakeieeiklivnrlr 174
                  +vvt     a+ +++r++  l ++e++  +++vn+l 
  MMETSP1174-20130828|23084_1 594 VVVTIATEVALAETERLVESLISEEVAVGNVVVNQLL 630
                  5555555558999999999999999999999999875 PP

>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.4   2.4e-07   6.7e-05       4      38 ..      22      56 ..      20      66 .. 0.91
   2 ?   -0.6   0.0      0.48   1.3e+02     131     172 ..     253     294 ..     243     305 .. 0.86
   3 !   24.1   0.5   1.4e-08   3.8e-06       3      39 ..     372     408 ..     370     439 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.4e-07
    TIGR01969  4 tiasGkGGtGkttvtanlgvaLaklGkkvlvlDaD 38
                 +++ GkGG+Gkt  ++ ++v La+ G ++lv+  D
  MMETSP1174-20130828|23084_1 22 VFVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVD 56
                 5789**************************99877 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.48
    TIGR01969 131 adelllvvnPeissitDalkvkivaeklgtkilGvvlnrvtk 172
                  a++ ++v  P   +++++ ++  ++e  g++   +++n+v  
  MMETSP1174-20130828|23084_1 253 ATQFVVVAGPTALAVAETERLVSSLEDSGVTTRSLIVNKVLG 294
                  778899999*****************************9854 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 1.4e-08
    TIGR01969   3 itiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDi 39 
                  ++++ GkGG+Gkt ++a lgv  a+ G++++v+ +D 
  MMETSP1174-20130828|23084_1 372 LVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDP 408
                  57899****************************9995 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.6e-07   9.9e-05       5      41 ..      24      60 ..      20      70 .. 0.89
   2 !   18.8   0.2   6.6e-07   0.00018       4      53 ..     374     423 ..     371     434 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.6e-07
    TIGR01281  5 vyGkGGiGksttssnlsvalakkGkkvlqiGcdpkhd 41
                 v GkGG+Gk++ ss ++v+la  G + l +  dp h 
  MMETSP1174-20130828|23084_1 24 VGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHS 60
                 77********************************996 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6.6e-07
    TIGR01281   4 avyGkGGiGksttssnlsvalakkGkkvlqiGcdpkhdstftltgklipt 53 
                   v GkGG+Gk++ts+ l v  a  G+  + +  dp h    +l  kl+p 
  MMETSP1174-20130828|23084_1 374 LVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHSLGDALGLKLVPG 423
                  578**********************************9999999999996 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05    0.0031      26      56 ..      27      57 ..      17      66 .. 0.86
   2 ?    2.2   0.0     0.089        24     126     139 ..     166     179 ..     141     183 .. 0.88
   3 !    6.0   0.0    0.0061       1.7      20      56 ..     372     408 ..     363     415 .. 0.85
   4 ?    3.3   0.0     0.041        11      90     139 ..     479     528 ..     455     536 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
    TIGR01007 26 kageGkstvsaniavafaqaGyktLliDgDl 56
                 k g Gk+  s+ iav++a aG++tL++  D 
  MMETSP1174-20130828|23084_1 27 KGGVGKTSCSSAIAVTLADAGLRTLVVSVDP 57
                 6788**********************99885 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.089
    TIGR01007 126 kyfDyiiiDtpPig 139
                  + fD +iiDt+P g
  MMETSP1174-20130828|23084_1 166 QSFDRVIIDTAPTG 179
                  68**********87 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0061
    TIGR01007  20 llitsvkageGkstvsaniavafaqaGyktLliDgDl 56 
                  l++   k g Gk+ +sa + v  a aG  t+++ +D 
  MMETSP1174-20130828|23084_1 372 LVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDP 408
                  5555668899***********************9985 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.041
    TIGR01007  90 eteienLtvitaGpvpPnPteLlqskkfkell.etlrkyfDyiiiDtpPig 139
                  + ++ +Lt +     pP   eL++ +k+  ll +  + +f  ii+Dt+P g
  MMETSP1174-20130828|23084_1 479 QLNLGDLTSVLDT-PPPGVDELVALAKVLALLrDDSKTRFSRIILDTAPTG 528
                  5555555444433.377778999977766665378999***********87 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   5.6e-06    0.0015     112     149 ..      26      63 ..      15      70 .. 0.89
   2 !   11.3   0.1   8.6e-05     0.023     107     153 ..     372     418 ..     345     424 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.6e-06
    TIGR03453 112 fkGGsgktttaahLaqylalrGyrvLavDlDPqaslsa 149
                   kGG gkt+ +  +a +la  G r L v +DP  sl  
  MMETSP1174-20130828|23084_1  26 GKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHSLGD 63 
                  59********************************9975 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.6e-05
    TIGR03453 107 iavvnfkGGsgktttaahLaqylalrGyrvLavDlDPqaslsalfGv 153
                  + +v  kGG gkt+t+a L+ + a  G   + v  DP  sl   +G+
  MMETSP1174-20130828|23084_1 372 LVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHSLGDALGL 418
                  556778***********************************877775 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.4e-06    0.0015       4      42 ..      23      61 ..      20      72 .. 0.88
   2 !    9.3   0.1   0.00048      0.13       3      41 ..     373     411 ..     371     422 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.4e-06
    TIGR01287  4 aiyGkGGiGksttvqniaaalaeagkkvlvvGcdPkads 42
                  + GkGG+Gk++ ++ ia +la+ag + lvv  dP +  
  MMETSP1174-20130828|23084_1 23 FVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHSL 61
                 5679*******************************8765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00048
    TIGR01287   3 iaiyGkGGiGksttvqniaaalaeagkkvlvvGcdPkad 41 
                  + + GkGG+Gk++t++ +    a+ag+  +vv  dP + 
  MMETSP1174-20130828|23084_1 373 VLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHS 411
                  5677********************************875 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   7.1e-05     0.019       2      46 ..      21      65 ..      20     130 .. 0.81
   2 !    8.5   0.0   0.00084      0.23       2      45 ..     372     415 ..     371     437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.1e-05
    TIGR02016  2 iiaiyGkGGiGksftttnlsaklallgkrvlqlGcdpkhdstsal 46
                  + + GkGG+Gk+   + ++ +la  g r l +  dp h    +l
  MMETSP1174-20130828|23084_1 21 FVFVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHSLGDVL 65
                 56788********************************99765555 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00084
    TIGR02016   2 iiaiyGkGGiGksftttnlsaklallgkrvlqlGcdpkhdstsa 45 
                  ++ + GkGG+Gk+ t + l    a  g+  + +  dp h    a
  MMETSP1174-20130828|23084_1 372 LVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHSLGDA 415
                  67899********************************9976555 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6   2.6e-06   0.00072     105     151 ..      12      58 ..       4      76 .. 0.84
   2 ?   -2.0   0.1       1.2   3.2e+02     244     275 ..     252     283 ..     215     301 .. 0.62
   3 !    8.1   3.0     0.001      0.28     115     166 ..     373     423 ..     352     547 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.6e-06
    TIGR03815 105 esdeargvvvaVvggrGGaGAStlAaalAlaaarsglrtlLvDadPl 151
                    +  +g+    vgg+GG G +  ++a+A++ a++glrtl+v  dP 
  MMETSP1174-20130828|23084_1  12 SPPAGEGLRFVFVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPA 58 
                  5556677777789*********************************6 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
    TIGR03815 244 sadlvlvVvpadvravaaAervlaalgrrnpd 275
                  +a++ +vV+  +  ava  er+++ l+++ ++
  MMETSP1174-20130828|23084_1 252 TATQFVVVAGPTALAVAETERLVSSLEDSGVT 283
                  34444555555555555555555555554443 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.001
    TIGR03815 115 aVvggrGGaGAStlAaalAlaaarsglrtlLvDadPlggGldlllgaedvpG 166
                    vgg+GG G +  +aal++  a++g+ t++v +dP  + l  +lg+  vpG
  MMETSP1174-20130828|23084_1 373 VLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHS-LGDALGLKLVPG 423
                  579*********************************643.445555555555 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.026       7.2      83     116 ..      23      56 ..      12      59 .. 0.84
   2 ?   -3.9   0.0       4.9   1.3e+03     159     170 ..     165     176 ..     159     180 .. 0.81
   3 !    7.9   0.0    0.0012      0.34      69     116 ..     360     407 ..     301     410 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.026
    TIGR00064  83 llvGvNGvGKTttiaKlakllkkegkkvllaAgD 116
                   + G  GvGKT+  + +a +l++ g ++l++  D
  MMETSP1174-20130828|23084_1  23 FVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVD 56 
                  3345679*********************999877 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 4.9
    TIGR00064 159 aknidvvliDTa 170
                   +  d v+iDTa
  MMETSP1174-20130828|23084_1 165 MQSFDRVIIDTA 176
                  67899******9 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0012
    TIGR00064  69 elkelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgD 116
                  ++ ++ ++    ++l+ G  GvGKT+t a l  ++++ g++++++ +D
  MMETSP1174-20130828|23084_1 360 DTLAHGDSGDQRLVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTD 407
                  4445556666778899999************************99988 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0002     0.055      28      75 ..      12      60 ..       7      71 .. 0.84
   2 ?    3.8   0.3      0.02       5.4      30      75 ..     366     411 ..     360     420 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0002
    TIGR00750 28 lpktGrahv.vGltGvPGaGkstlveklieelrrrGlkvaviavDPssp 75
                 +p +G+  + v + G  G+Gk    ++++ +l   Gl+  v++vDP+ +
  MMETSP1174-20130828|23084_1 12 SPPAGEGLRfVFVGGKGGVGKTSCSSAIAVTLADAGLRTLVVSVDPAHS 60
                 56667665426678999*****************************865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.02
    TIGR00750  30 ktGrahvvGltGvPGaGkstlveklieelrrrGlkvaviavDPssp 75 
                  ++G  + v + G  G+Gk     +l+      G+   v++ DP+ +
  MMETSP1174-20130828|23084_1 366 DSGDQRLVLVGGKGGVGKTSTSAALGVFCADAGQDTIVVSTDPAHS 411
                  6899999999*********************************865 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.037        10      41      58 ..      22      39 ..       8      58 .. 0.84
   2 !    8.2   0.0   0.00088      0.24      13      56 ..     347     388 ..     340     398 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.037
    TIGR00991 41 ilvmgkggvgksstvnsi 58
                 ++v gkggvgk+s   +i
  MMETSP1174-20130828|23084_1 22 VFVGGKGGVGKTSCSSAI 39
                 7899*******9987665 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00088
    TIGR00991  13 iqqfapatqtkllellgklkeedvssltilvmgkggvgksstvn 56 
                   + f p++q    + l +    d     +lv gkggvgk+st  
  MMETSP1174-20130828|23084_1 347 QNAFEPTAQGSSWDTLAHGDSGD--QRLVLVGGKGGVGKTSTSA 388
                  56788888888888887766665..4569************975 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0014      0.38     195     232 ..      20      56 ..      16      66 .. 0.90
   2 ?    1.9   0.0      0.07        19     184     232 ..     359     407 ..     281     420 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0014
    TIGR03600 195 dlivigaRPsmGKTtlalniaenvalkegkavlvfsle 232
                   ++ +g++ + GKT+ ++ ia+ +a  +g + lv+s++
  MMETSP1174-20130828|23084_1  20 RFVFVGGKGGVGKTSCSSAIAVTLA-DAGLRTLVVSVD 56 
                  57889*******************9.*********987 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.07
    TIGR03600 184 LDrltnGLv.kgdlivigaRPsmGKTtlalniaenvalkegkavlvfsle 232
                   D l +G   ++ l+++g++ + GKT+ +  + + +a  +g+   v+s++
  MMETSP1174-20130828|23084_1 359 WDTLAHGDSgDQRLVLVGGKGGVGKTSTSAALGVFCA-DAGQDTIVVSTD 407
                  5677776651457999************999999998.999999888876 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.83   2.3e+02     201     214 ..      21      35 ..      12      56 .. 0.70
   2 ?    0.2   0.0      0.46   1.3e+02     111     185 ..     235     324 ..     212     340 .. 0.60
   3 ?    7.8   0.4    0.0023      0.63     198     237 ..     370     407 ..     361     409 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.83
    TIGR03499 201 iaLv.GptGvGKTTT 214
                  +++v G  GvGKT  
  MMETSP1174-20130828|23084_1  21 FVFVgGKGGVGKTSC 35 
                  445516899****75 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.46
    TIGR03499 111 eelrkelkalkellekqlselal......eeedperakllkklleagvsee..larelleklke.......kedaeeareklreaLekkl 185
                  ++ r ++k+l++ll++ +++  +      +    e ++l++ l+++gv  +  +++++l    +       k+ +++a+e + + L+kk+
  MMETSP1174-20130828|23084_1 235 DNYRTQIKSLRDLLTDPTATQFVvvagptALAVAETERLVSSLEDSGVTTRslIVNKVLGANTNekftdqlKKGQTSAMERVDSRLSKKV 324
                  667777778888877777766557777765556666666777777776554212223222222234444444556666666666666666 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0023
    TIGR03499 198 ggviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtD 237
                  ++ +++ G  GvGKT T A L+  ++   g+ +  +++tD
  MMETSP1174-20130828|23084_1 370 QRLVLVGGKGGVGKTSTSAALGVFCADA-GQ-DTIVVSTD 407
                  33555557899**********9988855.55.55567776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 1499.48
//
Query:       MMETSP1174-20130828|23089_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 976.72
//
Query:       MMETSP1174-20130828|23092_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 235.69
//
Query:       MMETSP1174-20130828|23095_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 575.10
//
Query:       MMETSP1174-20130828|23098_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1121.91
//
Query:       MMETSP1174-20130828|23099_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-11   39.9   6.5      9e-11   39.9   4.5    2.4  2  TIGR00880 2_A_01_02: multidrug resistance protein
    7.8e-08   29.5   8.5    7.8e-08   29.5   5.9    1.7  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    8.1e-07   26.6   2.0    8.1e-07   26.6   1.4    1.7  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    2.4e-05   21.1   8.2    2.4e-05   21.1   5.7    1.6  2  TIGR00898 2A0119: cation transport protein
  ------ inclusion threshold ------
       0.79    5.3  11.2      0.019   10.7   2.9    1.7  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   4.5   1.1e-13     9e-11      13     115 ..       2     103 ..       1     120 [. 0.89
   2 ?    1.2   4.7     0.094        77      41     133 ..     316     411 ..     301     415 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.1e-13
    TIGR00880  13 vvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.qalg 115
                  + s l g+l+ r Gr+ +l++ +   + +q+ + ls+++ + + ar++qG+ ++a  va +++ia+i+++ + + +++ l +++ +g ++G +lG++l  + +g
  MMETSP1174-20130828|23099_1   2 ISSSLWGVLVKRWGRRRILFICITGTMCAQMSLGLSTTFLGALAARFFQGLCSGATTVA-KSYIAEISDNSTEATVFMALGVVFITGTVIGSFLGGLLScP-MG 103
                  66778889999***************************************998876655.6************************************9843.34 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.094
    TIGR00880  41 sqllfalssnitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavla..qalgwralflilallallafil 133
                  +++ +  s++  +l +  + +G++ a+a   +  ++  +++   ++  a+g l +g++l+++++ ++  +l   +++g   + +++++lal + ++
  MMETSP1174-20130828|23099_1 316 FAIWARNSKSSGGLSFTVFGIGMIQATAGLWTILSFTVLYPVVgQVCTAVGSLRLGLVLSLLFAYPIPIILSflEWSGDNTPTWLALFLALGVNAV 411
                  5566666789999***************99999999999*9988**************************99999***999*99999999977665 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   5.9   9.5e-11   7.8e-08      71     186 ..       6     120 ..       1     129 [. 0.93
   2 ?   -1.7   0.3      0.27   2.2e+02     261     330 ..     308     376 ..     253     419 .. 0.54

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 9.5e-11
    TIGR00895  71 lfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllll 186
                  l g+l  r gR+r+l ++i       + ++l+t++   l++Rf+ gl  G+++  +   ++E + +   atv   + v +  G+++g++l++ll   +g   lf +g++ p +l+ 
  MMETSP1174-20130828|23099_1   6 LWGVLVKRWGRRRILFICITGTMCAQMSLGLSTTFLGALAARFFQGLCSGATT-VAKSYIAEISDNSTEATVFMALGVVFITGTVIGSFLGGLLSCPMGNEPLFSLGSWSPFFLAR 120
                  5789999****************************************998865.678899****************************************************9985 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.27
    TIGR00895 261 lllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvlalllllaavfavl 330
                  + +    + ++W     +  g s++   + +++  ++g+  +l + +l   +g+  +a+++l  + +++l
  MMETSP1174-20130828|23099_1 308 VYSSFNEVFAIWARNSKSSGGLSFTVFGI-GMIQATAGLWTILSFTVLYPVVGQVCTAVGSLRLGLVLSL 376
                  33333333444544444444444433332.2333444555555555555555555555555555555444 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   1.4   9.9e-10   8.1e-07      59     152 ..       6      98 ..       2     109 .. 0.89
   2 ?   -2.3   0.2      0.57   4.7e+02     326     363 ..     287     324 ..     268     371 .. 0.55

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 9.9e-10
    TIGR00710  59 llGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyv 152
                  l+G l  ++GR+ +l ++++  + + + l ls +    l++Rf+q++   a+ V  ++ +  i  +     v+ +l+++++   ++++++Gg++
  MMETSP1174-20130828|23099_1   6 LWGVLVKRWGRRRILFICITGTMCAQMSLGLSTTFLGALAARFFQGLCSGATTVA-KSYIAEISDNSTEATVFMALGVVFITGTVIGSFLGGLL 98 
                  7**********************************************99998886.56666777766667788889****************97 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.57
    TIGR00710 326 LeefphvaGtasallgtlrlvlgaivgllvslikeeta 363
                  L++    + +++a++  ++ ++ ++   + +   +++ 
  MMETSP1174-20130828|23099_1 287 LQKHRMHTLRVTAVIYWIYCAVYSSFNEVFAIWARNSK 324
                  44444444445555555555555444444443333333 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   5.7     3e-08   2.4e-05     140     234 ..       1      94 [.       1      98 [. 0.95
   2 ?   -3.1   0.1      0.63   5.2e+02     308     343 ..     273     308 ..     254     316 .. 0.58

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3e-08
    TIGR00898 140 LlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllall 234
                  L++s ++G l  r+GR+++L++ + +t+   +   +s ++   l  r+ +G+ +++ ++va   i+E+ + ++ a+v +   v+f  G+++ ++l
  MMETSP1174-20130828|23099_1   1 LISSSLWGVLVKRWGRRRILFICITGTMCAQMSLGLSTTFLGALAARFFQGLCSGA-TTVAKSYIAEISDNSTEATVFMALGVVFITGTVIGSFL 94 
                  799**************************************************999.77788889*************************98776 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.63
    TIGR00898 308 ekkakkaslldllrtpklrkttlllmllwfttafsY 343
                  ++   ++++++ ++ +k r++tl + +++  +  ++
  MMETSP1174-20130828|23099_1 273 MSTRMQQQIAQKIELQKHRMHTLRVTAVIYWIYCAV 308
                  333345666666666666666665554443333333 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.9   2.3e-05     0.019     218     360 ..       3     149 ..       1     157 [. 0.80
   2 ?   -2.4   0.4      0.21   1.7e+02     275     316 ..     307     350 ..     290     363 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
    TIGR01299 218 gaflwggladklgrkqsllislsvnsvfafls.sfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygws..fsmgsayqfhswrvf...vlvcalpsvsavvalttqpesprf 360
                   + lwg l  + gr++ l+i+++   + a +s  +   +   l +r++ g+   ga  +  sy+ae+  +      +  l + ++ g v  + +   +    g    fs+gs   f   r f   v+v +  s  ++ +l t   +prf
  MMETSP1174-20130828|23099_1   3 SSSLWGVLVKRWGRRRILFICITGT-MCAQMSlGLSTTFLGALAARFFQGLC-SGATTVAKSYIAEISDNSTEATVFMALGVVFITGTVIGSFLGGLLSCPMGNEplFSLGSWSPFFLARPFllpVIVTSGHSALSLLTLFTINGTPRF 149
                  5679*****************9865.45555515666777778999999997.56788999********9999999999*************9999888777764449*****999999998333456666666777777788889998 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.21
    TIGR01299 275 ivfsyfaevlarekrgehlswlcmf..wmiggvyaaamawaiip 316
                   v+s f ev+a   r  + s    f  + ig + a+a  w+i+ 
  MMETSP1174-20130828|23099_1 307 AVYSSFNEVFAIWARNSKSSGGLSFtvFGIGMIQATAGLWTILS 350
                  68999999999888877777544441156899999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 1637.29
//
Query:       MMETSP1174-20130828|23102_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|23107_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 382.77
//
Query:       MMETSP1174-20130828|23106_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 873.46
//
Query:       MMETSP1174-20130828|23109_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1879.84
//
Query:       MMETSP1174-20130828|23115_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1678.15
//
Query:       MMETSP1174-20130828|23121_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 512.12
//
Query:       MMETSP1174-20130828|23119_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 905.93
//
Query:       MMETSP1174-20130828|23122_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.1   0.0      0.032   12.2   0.0    1.4  1  TIGR02998 RraA_entero: regulator of ribonuclease activity A


Domain annotation for each model (and alignments):
>> TIGR02998  RraA_entero: regulator of ribonuclease activity A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.7e-06     0.032       5      53 ..      44      92 ..      41     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.7e-06
    TIGR02998  5 tselcdlyaelvdvveplfsnfggrssfagkvvtvkcfedngliaelle 53
                 t+++cd+y  +v  +   f+ +ggr   ag++v      +++  +e+l 
  MMETSP1174-20130828|23122_1 44 TTQFCDVYPFMVPALTDSFTVYGGRMPHAGRLVGTVFHAHQNAFQEILL 92
                 889****************************997777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 900.63
//
Query:       MMETSP1174-20130828|23126_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-25   86.6   0.0    3.7e-25   86.3   0.0    1.0  1  TIGR00172 maf: septum formation protein Maf


Domain annotation for each model (and alignments):
>> TIGR00172  maf: septum formation protein Maf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0     9e-29   3.7e-25       4     184 ..      21     209 ..      19     210 .. 0.93

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 9e-29
    TIGR00172   4 eliLaStSprRkelLeelgisfetavsefeE...ksnksedpreyVlrlakeKaqavaell.adal...iigaDtivildgrileKpktkeeakkflrklsgeevevlTavaLiksagrellteldetkvafkalseeeieeYvesgeplevaGafkiegkg.ailiekiegdysnvvGLplekllklL 184
                  ++iL+S+S  R++lL   g +f ++++ ++E     ++s d+  +V  la +Ka a+ +++  d++   ++  D++v   g+i eKp++ +ea+ f+        + + a+ L +++ +  +  +++ +++++ l  + i+  +e g  l++aG+  +e    a+++ ++eg   +v+GL+   l +lL
  MMETSP1174-20130828|23126_1  21 KFILGSASASRRALLTATGAKFDVMIPDIDEkaiGVRASGDADVLVRLLAGAKADALLDRIgSDNVgavLLTGDQVVTYRGQIREKPRDLDEARDFIESYASAPCSTVGAICLHDPVTGSRVVGVHTADIHLAPLPSDVIDGLIEEGTVLHCAGGLMVEHPAiAPYLTHVEGGIDSVMGLSTRLLASLL 209
                  59*****************************6555799******************8777625666887899***************************************************************************************865379****************98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 777.27
//
Query:       MMETSP1174-20130828|23130_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|23132_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    7.8   9.8       0.13    7.7   6.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.8   3.1e-05      0.13     681     788 ..       2     110 ..       1     113 [] 0.81

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 3.1e-05
    TIGR02168 681 ieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqle.erlaqlekeleeleeereeleeeleeaeeelkeaeeeiee 788
                  i+ l++e  e+e+++++++ +l+e + ++++ ++ l++ rk+le+++ + ++ ++++++l +++e+ +   +a l +e++e ee   +++++ + a ++lk++++ ++e
  MMETSP1174-20130828|23132_1   2 ISALTRERSEQEAALDATTGALAECRAQRSREASLLDQTRKDLEDARSQQAQDRASAASLLEKIEAERcGAIALLARERAEWEEGSGAYRKAGDLAAQRLKAVKDSLAE 110
                  6678889999999999999999999999999999999999999999999999999888888887765425788899999999998888888888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 331.44
//
Query:       MMETSP1174-20130828|23133_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|23135_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 438.86
//
Query:       MMETSP1174-20130828|23131_1  [L=751]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 2360.09
//
Query:       MMETSP1174-20130828|23138_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056    9.7  12.4       0.12    8.6   8.6    1.5  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.6   2.9e-05      0.12      17     139 ..      72     220 ..      64     233 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 2.9e-05
    TIGR00815  17 DliAGltvgillvPqamayaklaglsPeyGLYtsfvaaliyalfgtSrdiaiGpvavlslllgkvvaevlkkaked.....................vdaikiattltll......aGivqvllGllrlGflveflskavisGFmtGaai 139
                   ++ G++ ++++vP   +ya ++ ++P y       a l+  l     +i+   ++ +s  +g+v +  l    +                       +++ +att+  l       Giv+v++G +rl+  + +l+ +vi G+++ +++
  MMETSP1174-20130828|23138_1  72 AILLGVINAVMAVPSMYGYAAVIFQHPTYAGNMGALAKLVC-LSSAVHQICFMLFSQMSFAIGQVQDAGLIFLSHIatniavsltlndgatetevaaAEHRAVATTVVTLglgtaaLGIVLVFIGRARLAKYIAYLPMPVIGGYLAFIGL 220
                  56779***********************9887777777764.5566788888888888888888876543322222456888899999********988888888764442233226***************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.52
# Mc/sec: 652.33
//
Query:       MMETSP1174-20130828|23144_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 158.39
//
Query:       MMETSP1174-20130828|23146_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-82  273.3   0.0    6.5e-82  273.0   0.0    1.0  1  TIGR00519 asnASE_I: L-asparaginases, type I
    1.1e-56  190.1   0.0    1.4e-56  189.7   0.0    1.0  1  TIGR02153 gatD_arch: glutamyl-tRNA(Gln) amidotransferase, subunit D
    6.8e-15   52.6   0.0    9.5e-15   52.1   0.0    1.2  1  TIGR00520 asnASE_II: L-asparaginases, type II


Domain annotation for each model (and alignments):
>> TIGR00519  asnASE_I: L-asparaginases, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.0   0.0   4.7e-85   6.5e-82       2     336 ..       8     345 ..       7     346 .. 0.94

  Alignments for each domain:
  == domain 1    score: 273.0 bits;  conditional E-value: 4.7e-85
    TIGR00519   2 kdvsilstGGtiaskvdertgavapa.ftadellsavpelldianida...eavmnilsenmkPeyWveiAeavkkelddadGvviaHGtDtmaytaaALsfmlkt.kkPvvltGaqrssdrpssDaklnllsavraAaeeikevvvvlhgvtsdlscrlhrGvkvrklhtsrrDaFksinakplaeinefdgieylkevekkrgedelevddrleekvaliklyPGlsadiiraylsk..eykgivlestGlGhvpeel...leklkeaidkgvvvvmttqclegrvnmnvYetGrellkagviegedmlpevalvklmylLgqes..dleevkklmeknlageie 336
                   +v++++tGGt+++k+de  g++ pa + + e++ + pe+  ++++     e++++++s++  Pe W+ +A+++++ + d+dG+vi+ GtDtmay+++ALsfml++ +kPv++tG+ ++  +p sDa+ nl+ ++ +A +        + +v + +++ l rG++++k+   + DaF s+n +pla++++  gi++ +    +  ++ l+++ ++e ++ +++l PG+    i+  +++  + k++vles+G G++p++    l+ +k+ai+kg+ v++t+qc +g v  + Y +Gr+ll+ gvi++ dm++e++++kl y+Lg  s  + +e  ++m+ nl+ge++
  MMETSP1174-20130828|23146_1   8 SKVLLIYTGGTMGMKKDE-FGSLLPApGYLTEQIGKLPEMMGEEMPLCmikEYTTLVDSSDFSPEIWKSLAHDIHDYYFDFDGFVIVMGTDTMAYATSALSFMLEHlGKPVIFTGSMIPFFEPYSDARRNLIVSMLLAGNLD------IPEVCVYFNSLLLRGNRAIKMDNFNIDAFCSPNFPPLATLGT--GIQVREDLLCTAPKRALRLHLKMEANILVVRLVPGFRDSAIDSIVEHtpDLKALVLESYGTGNAPSSRkelLDIIKKAIEKGILVMITSQCEKGSVALENYTVGRKLLELGVISAGDMTTEATVTKLAYVLGSRSyvNFPERVQAMQSNLRGELS 345
                  5899**************.999999999************99988766666***************************************************************************************9976......6788899**********************************9..8999999999999************************99999887653379**************877778*************************************************************9772245666789*******985 PP

>> TIGR02153  gatD_arch: glutamyl-tRNA(Gln) amidotransferase, subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.0   1.1e-59   1.4e-56      61     402 ..       6     347 ..       2     350 .. 0.85

  Alignments for each domain:
  == domain 1    score: 189.7 bits;  conditional E-value: 1.1e-59
    TIGR02153  61 elekvsilstGGtiaskvdYetGavkpa..ltaeelleavpel...keianikaravlnilsenmkPesWikiaeevakaleegadgvvvahGtDtmaytaaaLsFmlkklpvPvvlvGaqRssDRPssDaalnliaavkvake.diaevvvvmhgetsDtyvlvhrgvkvrkmhtsRRDaFksinslPlakvdpkekeiellredyrkrgekelelkdkleekvalvkfyPGlspeilealvdk..gykgivieGtGlGhvs...edlievikkavddgvvvvmtsqclyGrvnlnvYstGRellkaGvieaedmlpevayvklmwvLgqteele..evrkllkknlageieer 402
                  +++kv ++ tGGt+  k d e G+  pa  + +e++ +  + +     ++ ik +  + + s ++ Pe W+++a+++ +   +  dg v+  GtDtmay+++aLsFml++l +Pv+++G+      P sDa+ nli ++ +a + di ev v           l+ rg +  km     DaF s n  Pla++ +    i++ ++      ++ l l+ k+e ++ +v+ +PG++ + ++ +v++  ++k++v+e  G G ++   ++l+++ikka+++g+ v++tsqc  G+v l+ Y+ GR+ll++Gvi a+dm++e+   kl++vLg  + ++  e  + ++ nl+ge++ +
  MMETSP1174-20130828|23146_1   6 KKSKVLLIYTGGTMGMKKD-EFGSLLPApgYLTEQIGKLPEMMgeeMPLCMIK-EYTTLVDSSDFSPEIWKSLAHDIHDYYFD-FDGFVIVMGTDTMAYATSALSFMLEHLGKPVIFTGSMIPFFEPYSDARRNLIVSMLLAGNlDIPEVCVYFN-------SLLLRGNRAIKMDNFNIDAFCSPNFPPLATLGTG---IQVREDLLCTAPKRALRLHLKMEANILVVRLVPGFRDSAIDSIVEHtpDLKALVLESYGTGNAPssrKELLDIIKKAIEKGILVMITSQCEKGSVALENYTVGRKLLELGVISAGDMTTEATVTKLAYVLGSRSYVNfpERVQAMQSNLRGELSVQ 347
                  6789**********99988.778887652255555544333331003344443.333445599*****************999.9******************************************************************9975.......589***************************9984...55555555666667799*************************99874479******99999886333589*************************************************************98766511555789*******9865 PP

>> TIGR00520  asnASE_II: L-asparaginases, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   6.9e-18   9.5e-15      31     309 ..      14     290 ..       6     313 .. 0.79

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 6.9e-18
    TIGR00520  31 atGGtiagkgqssas...taeYkvgklgvedLieavPelkeianiegeqivnvgsqdlneevllklakrisealasddvdGivithGtDtleetayfldltvks.dkPvvlvGamRpatsvsaDGplnLYnavsvaadeksagrGvlvvlndrilsarevtktnttsldtfkseeqGalGyiandkieyerepvkkhtlet.efdvskldeplPkvdiiYayqnl.peelvkavvdagakGivlagvGnGsls...aaalkvleeaakesvvivrssRvadGvvtkda 309
                   tGGt+  k ++  s     +Y ++   + +L e + e   ++ i+ e  + v+s d+  e++  la+ i++   ++  dG+vi  GtDt+  +   l   ++   kPv++ G+m p  +  +D   nL  ++ +a++ +     v v +n  +l +   +k++  ++d+f s +   l ++    i+ +++ +    + + + +++   + +  v ++ ++ +   + +v+ + d   k +vl + G G+ +   ++ l+  ++a+++++ ++  s  ++G v+ ++
  MMETSP1174-20130828|23146_1  14 YTGGTMGMKKDEFGSllpAPGYLTE--QIGKLPEMMGEEMPLCMIK-EYTTLVDSSDFSPEIWKSLAHDIHDYYFDF--DGFVIVMGTDTMAYATSALSFMLEHlGKPVIFTGSMIPFFEPYSDARRNLIVSMLLAGNLDIP--EVCVYFNSLLLRGNRAIKMDNFNIDAFCSPNFPPLATLGT-GIQVREDLLCTAPKRAlRLHLKMEAN-ILVVRLVPGFRDSaIDSIVEHTPDL--KALVLESYGTGNAPssrKELLDIIKKAIEKGILVMITSQCEKGSVALEN 290
                  5666666665553331112345555..4455666666666677776.556789******************998766..7**********************998**************************99999998876..5999******************************999988.56666665544444411455555555.8899999999876467888888887..88999999999876111556788899*****************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.55
# Mc/sec: 854.33
//
Query:       MMETSP1174-20130828|23152_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1135.91
//
Query:       MMETSP1174-20130828|23150_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1688.78
//
Query:       MMETSP1174-20130828|23154_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|23156_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1210.66
//
Query:       MMETSP1174-20130828|23158_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 185.76
//
Query:       MMETSP1174-20130828|23161_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 618.46
//
Query:       MMETSP1174-20130828|23163_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   18.4   3.5     0.0024   14.3   2.4    2.0  1  TIGR00831 a_cpa1: Na+/H+ antiporter
    0.00045   16.5   4.5    0.00081   15.7   3.1    1.4  1  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3


Domain annotation for each model (and alignments):
>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.4   1.2e-06    0.0024       5      83 ..      38     133 .]      32     133 .] 0.63

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.2e-06
    TIGR00831   5 elvvavsavvvlvkrfrvplpvllilaGallgla.............tlllev........eldrevvlllFlPplLfaeamntdlrelrenlreivlla 83 
                  +l + v ++ v  k+  vp++vll+l G+++gl              t+   v        ++++ +v+ +FlP l+f+ a+n +++ +  ++ +i++la
  MMETSP1174-20130828|23163_1  38 ALTAGVFSARV-LKHTGVPYTVLLLLLGSVIGLCdkhifiyidgyagTI---VqesvsqwsNINPHLVMYIFLPILIFESAYNCNTHVFYVEISQILILA 133
                  33333333333.2455699999999999999986222111222111111...11112333368999************************9999999886 PP

>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.1     4e-07   0.00081       6     100 ..      25     133 .]      20     133 .] 0.77

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4e-07
    TIGR00840   6 qkpllivllillvslakisfhltqkvlrvvpEsvllivvGllvggiikaaer..............kdpvtldsslfFlvLLPpivldaGyflpkreFfenlgsiLlfA 100
                  +   +++l  l ++l   +f         vp +vll+++G ++g+  k +                 +   ++++l   + LP ++ ++ y+ +++ F+  + +iL+ A
  MMETSP1174-20130828|23163_1  25 HVDPEFALAFLFIALTAGVFSARVLKHTGVPYTVLLLLLGSVIGLCDKHIFIyidgyagtivqesvSQWSNINPHLVMYIFLPILIFESAYNCNTHVFYVEISQILILA 133
                  44457888888899988888888777889**************9753322212223555777544445567999********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 548.58
//
Query:       MMETSP1174-20130828|23160_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    4.5  10.9       0.84    5.0   0.3    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   3.2    0.0005       2.1     402     484 ..      22     106 ..      16     137 .. 0.71
   2 ?    5.0   0.3   0.00021      0.84     402     451 ..     156     205 ..     149     247 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0005
    TIGR02169 402 lnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaek..elrklkeeleklek 484
                   ++l ++l+r  e+  r+ e  +e+k  +++++ + ae  ++  ++++++k+ e+ l  +++ +e+ +   + ++++ e++  ++
  MMETSP1174-20130828|23160_1  22 ADSLLNTLSRIGEKVVRIVEVESEAKSRVAEAQRREAEAMATSSDKDKRVKALENDLLAAHQVVETGKImlRAFQQRPEFSTTNS 106
                  5677778899999999999999999999999999999999999999999999999998888887765440044444445555554 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00021
    TIGR02169 402 lnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeei 451
                  l+ +++++dr + e++ +e+ela lk   e++++k  ele +   l ++i
  MMETSP1174-20130828|23160_1 156 LEAVQGQRDRFKKEARTRESELALLKSITEQLQSKCSELERDNMVLYKKI 205
                  23333333333333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1063.68
//
Query:       MMETSP1174-20130828|23168_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 749.13
//
Query:       MMETSP1174-20130828|23169_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1927.04
//
Query:       MMETSP1174-20130828|23179_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1174-20130828|23180_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|23183_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   68.0   0.0    1.4e-19   67.9   0.0    1.0  1  TIGR01530 nadN: NAD nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01530  nadN: NAD nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.5e-23   1.4e-19      84     178 ..       2     105 ..       1     106 [] 0.91

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 3.5e-23
    TIGR01530  84 dyftlgnhefdagneglkklleyl.........kvpvlsanvvpdkasilynkwkpsdivevdgekiavigldtvkktvessspgkdvkfideieavriaavel 178
                  d f lgnhefd+g+e l  +l  l         ++ vl+anvvp ++s l ++   + i++v  ek++vigld  +kt+ sssp +   ++de  ++r+  ++l
  MMETSP1174-20130828|23183_1   2 DAFILGNHEFDDGDETLATFLSWLtdtnyhcanNLAVLAANVVPGESSPLVGMLGNHTIITVGSEKVGVIGLDVRQKTMVSSSPSHGTYLLDEATTARRCIAAL 105
                  5799*****************988444444444589**************************************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 482.44
//
Query:       MMETSP1174-20130828|23181_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-47  159.9   1.7    5.8e-27   92.5   0.0    2.3  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.6   1.8e-22   7.3e-19       5     207 ..      55     279 ..      52     307 .. 0.80
   2 !   92.5   0.0   1.4e-30   5.8e-27     234     438 ..     373     590 ..     346     599 .. 0.81

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 1.8e-22
    TIGR03417   5 ililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaaefasd.ipt...yahylraaGyktalsGkmhfvGpdqlhGfeerlttdiyPadfgwtpdydkpeeridwyhnlssvleaGvavitnqleyddevafkakqklydlar...................ekdarPfcltvslthPhdPyvirkkywdl 207
                  +l+lm+dq  + ++ + g+ +v ++P+++r+a+++++f na++++P+c+Par ++l+G+ P r g+    +e+a     t       l ++Gy+ta  Gk hf        +      +iyP +   + d  + +  i   +n      +G++   +   +++e  +  + ++y+ +                    e+ ++Pf l vs+  Ph Py  + +  d+
  MMETSP1174-20130828|23181_1  55 VLMLMMDQARPDAMGVTGN-SVAETPHMDRIANEGARFLNAFSSTPMCTPARQAILTGRSPWRHGMRVYMSEVAPRkYTTwleLPSTLAQNGYYTASIGKNHFGYNSTTMEWFTHGFNEIYPYEGDLAEDKMSSKFEIFDSYNAWFNETCGTCDPLETQPFEQENGWWGSTYVYNESWhptawtgdkaltwldwwdsETRDQPFFLKVSFLRPHSPYDPPARVLDV 279
                  89**************998.9****************************************9987666666665430333111567899**************8766554444444567999877777765554444433334445567999*999999****************99889999999999999998776779****************887777665 PP

  == domain 2    score: 92.5 bits;  conditional E-value: 1.4e-30
    TIGR03417 234 kaldlkekditeeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperleagrve...aavstv....dllPtlvelagveleevlp.aldGeslvpllkgkerk..devlgeylaegsi..aPlvalrrGkykfvkcead.PeqlydleadPkelenlaeepehaetlealraeaaa 438
                  +++d+   d+  ++++ +r  y+a++s+vd+++G++++ + + +  d t+v++ +dhGd lG++ lw k    ++ a vP+ +  pe ++++      +++s++    d+ Pt++++a++ + ++    ldG s++ ll++k+ +  +++  e ++          a+ +G  k+++   d  eql+++++dP el++l+++ e+ e l+ +r e  +
  MMETSP1174-20130828|23181_1 373 SVADTYCGDPGMTRVQLTRALYYASLSFVDEQMGKIMKRVSDYGWLDSTLVILFADHGDSLGDHHLWRKGFPTQQVATVPMYIRWPESMDSSIEVergDTISSIvelrDVFPTIADFANITIPTEGDnRLDGMSMMKLLQDKNVEwrTSIDLELATCNFNytMNWNAMTDGVIKYIYYLYDgSEQLFNISNDPYELSDLSTDEEYYEYLDYWRGELVE 590
                  56667777888899999*****************************************************99***************9987643211133443334459************98776659**********998765114444555443332013345899********9998458*******************999999888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 1934.84
//
Query:       MMETSP1174-20130828|23185_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 837.45
//
Query:       MMETSP1174-20130828|23187_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 404.22
//
Query:       MMETSP1174-20130828|23188_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1630.70
//
Query:       MMETSP1174-20130828|23191_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 541.16
//
Query:       MMETSP1174-20130828|23192_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1174-20130828|23199_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   21.7   0.0    1.6e-05   21.4   0.0    1.0  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.9e-09   1.6e-05     448     548 ..       6     115 ..       2     131 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.9e-09
    TIGR00815 448 ypkaltppgvlvyrvdgplyfanaerlkdrllkriede.esareakrd.........rlkvvildfsavaqlDtsgihalkelrkeleargielllanvakevreklkrse 548
                    + lt+ g +++ v+gpl+f +a  ++ +l   + d+ + a   ++          + +vv +df +   +Dtsgi a++ + +++ + +i+l l +++++ re l+   
  MMETSP1174-20130828|23199_1   6 TTQTLTWGGERTIAVTGPLFFGSARAFQ-ELCAPTPDDvSFAYGREKRgilrflgfgLSRVVTIDFLNSRVWDTSGISAIDSMAAQYSQLNITLHLRHLSPDCRELLAANS 115
                  56778999999************99998.788888765444444444499******966899999999999*********************************9997644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 893.46
//
Query:       MMETSP1174-20130828|23195_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1617.63
//
Query:       MMETSP1174-20130828|23198_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1006.89
//
Query:       MMETSP1174-20130828|23197_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0092   11.5  69.1      0.049    9.1  21.6    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.49    5.8  64.1       0.99    4.7  21.5    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        3.2    3.8   7.5        5.1    3.2   5.2    1.3  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1  21.6   3.6e-05     0.049     705     937 ..      76     308 ..      63     316 .. 0.75
   2 !    4.6  31.9   0.00086       1.2     701     961 ..     250     508 ..     230     560 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3.6e-05
    TIGR02168 705 lekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleele 937
                  ++ + ++   e   l++++ +l+++++ +++++e + +++ q+ ++++q +k+   l+ + e+l++e +++++ +   +e+   l++++ +l+  +++++++ ++l+++ ++l  + ++ ++r ++l+++ ++++k l  ++ ++++le   +sl++e +  + +l e+++e  +l+++k +++ + + +++  + l+++ +++e++ + l+    e  ++ a+++++ e+l+
  MMETSP1174-20130828|23197_1  76 IDADERNSSAEKLRLQRRIFQLTEQMELQYNRFEVIGEREAQVDAEAQQVKKQWGALKRRGEQLDDEQTKLFKLFTVLDERELHLQQQFGELRLLFNTWNSTKDDLSRKEKDLAFQDQDMRQREAELTRQQDEKRKILAAINLETDKLELLGASLSEEKDVHDMSLLEMTAESVRLKQQKLEISSREDVANDLSQLLMTREQDVEQRESLLKIHEAEVSASKAAMREKEESLK 308
                  44444445555666778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888878888888888888877777777777777777777777777777777777777777777777776665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.00086
    TIGR02168 701 elkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeel 961
                  +lk+ + e ++ e+ +++l + l + e++++++++ l+ +e+ev + ++ ++++e+ l++     e+ ++++ e+e++l+++  e+++ ++e++    +++  + al+ +e++++e k++++ ++++ e+ +k+++ +++el+  e++  ++e + ++l+++ ++l+ ++++++e+ +++    a  ++  +++ +el+e+++ l e  + v +l+re ++ ++ + + ++++++l++++ae  +r ++e +l+  +a ++
  MMETSP1174-20130828|23197_1 250 RLKQQKLEISSREDVANDLSQLLMTREQDVEQRESLLKIHEAEVSASKAAMREKEESLKRGYSDVEASQAAVIEKESNLARSTLEVDSMRDELKVRLIDTDRREGALATAEEAANEIKKKLQAEKSNFEQQKKDLSCKQNELDGREKKVTDMESRYANLQKQDKDLSVRIAAQKEKEDKFYMIEA--AQISNKHARELREVESLLAEQLELVYTLQRENSASKKTIFERDATISKLKIDLAEASKRSRNEPSLQSYTAPNM 508
                  22222222333333344444444444445555555555555555555555555555555554444444444444445555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544444444444444432..22222233333344444444444555555555555555555555555555555555555555555544444444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  21.5   0.00073      0.99     288     510 ..      85     303 ..      63     309 .. 0.68
   2 ?    1.9  27.3    0.0053       7.3     742     954 ..     260     480 ..     252     496 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00073
    TIGR02169 288 eeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaael...reelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesres 510
                   e+l+       l+  i +l ++++ + ++ e + er+a+ +ae +++k++  +l+r+ e+   e++kl + +  l e++ +l+++  e+   ++++   ++ l+ +++ l    + + + + el r ++e++++ ++++    +le + +++ e ++  +    e+ ++  +l+q k + ++ e+   +l++ l   e+ +++ e+ l+  ea+ +as+ + re+
  MMETSP1174-20130828|23197_1  85 AEKLR-------LQRRIFQLTEQMELQYNRFEVIGEREAQVDAEAQQVKKQWGALKRRGEQLDDEQTKLFKLFTVLDERELHLQQQFGELRLLFNTWnstKDDLSRKEKDLAFQDQDMRQREAELTRQQDEKRKILAAINLETDKLELLGASLSEEKDVHDMSLLEMTAESVRLKQQKLEISSREDVANDLSQLLMTREQDVEQRESLLKIHEAEVSASKAAMREK 303
                  33344.......4555556666666666666666666666666666666666666666666666666666666666666666666666655555555000555555555555556667777778889999999999999999999999999999999888888888888888898888888888888888888888888888888888888888888877776444 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0053
    TIGR02169 742 eleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse..ekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeele..aeiekkrkrlkelkaklealeeelselee...ev.keeeeepeeelsl 954
                    e+  + l++ l   ++ +++ e+ ++  e+++++ k+a+ + e++l++  + +e +++ + + e +++r    ++++  el+ + ++ +  e + ++++e  +e++++ ++++ + e++k++l   ++el+  e++v ++e+++++L+k+ ++l+  + ++++k+++    ++++  +k+++el++  + l+e+l+ +     e  ++++ + e ++++
  MMETSP1174-20130828|23197_1 260 SREDVANDLSQLLMTREQDVEQRESLLKIHEAEVSASKAAMREKEESLKRgySDVEASQAAVIEKESNLARSTLEVDSMRDELKVRLIDTDRREGALATAEEAANEIKKKLQAEKSNFEQQKKDLSCKQNELDGREKKVTDMESRYANLQKQDKDLSVRIAAQKEKEDKFYmiEAAQISNKHARELREVESLLAEQLELVYTlqrENsASKKTIFERDATI 480
                  33444444455555555555555555555555555555555555555543225566666666677777788888888888899988899999999999999999999999999999999999999999999999999999999999999999999999999999999886421456667777788877777777777654430003333334444444444 PP

>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   5.2    0.0037       5.1     398     583 ..     273     459 ..     211     464 .. 0.43

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0037
    TIGR00926 398 vedllskeekesksgieskesskkpngddeldidlsadglagevskl.kkevelekkkskvllvsqdglkly.evaaktekaktekGelsirlvstlnkeggaialskeesesvednlsvdksekaklyv.lepavnleeedkkksatlea..................aqlkeGavyllvitsrseedklqakelelvspnsvsil 583
                  ++  + +e+ es  +i++ e                   ++ +   + +ke +l+++ s v+  +   ++   + a +t + ++ + el +rl+ t  +e ga+a ++e++++++++l+++ks++ ++++ l+ + n  +  +kk +++e+                   + ke + y++   + s+++  + +e+e +  +++ ++
  MMETSP1174-20130828|23197_1 273 MTREQDVEQRESLLKIHEAE-------------------VSASKAAMrEKEESLKRGYSDVEASQAAVIEKEsNLARSTLEVDSMRDELKVRLIDTDRRE-GALATAEEAANEIKKKLQAEKSNFEQQKKdLSCKQNELDGREKKVTDMESryanlqkqdkdlsvriaaQKEKEDKFYMIEAAQISNKHARELREVESLLAEQLELV 459
                  11222222222222222222...................2222222202222333333333322222222220223333344444556666666665555.5555555555555555555555544433102222222222233344444444444444433333333156677777777766555556666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       439  (0.107021); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.18s 00:00:00.96 Elapsed: 00:00:01.06
# Mc/sec: 845.48
//
Query:       MMETSP1174-20130828|23201_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 699.19
//
Query:       MMETSP1174-20130828|23203_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   19.9   0.0    7.2e-05   19.8   0.0    1.1  1  TIGR01426 MGT: glycosyltransferase, MGT family


Domain annotation for each model (and alignments):
>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.7e-08   7.2e-05       7     122 ..       3     128 ..       1     166 [. 0.70

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.7e-08
    TIGR01426   7 GHvnPtLgvveeLvkrGhrVtYaiteefaekveaagAeavlYesalee..edlkee......nateeelldileklldealsvlpqleealkedkpD..lvvydias....lagkllarklkvPvislfp 122
                  G + P L++++ L++ Gh+V  a+    +e v +ag ++     + ++  e++ +       n     l +     l e +++++++ +  ++   D  +v+ +i +    + +  +a+kl++P+  +fp
  MMETSP1174-20130828|23203_1   3 GDIQPFLQIAQRLIADGHQVRLATHGLYEEFVTEAGVTFYHLAGDPKKlsEFMVKTggrllpN----LLSKEERDALPEKMEMIEAITRSSQHACEDssFVAQAIIAnpvaYGAVHMAEKLDIPMHLMFP 128
                  889********************************9888665555444434444447644443....3333344455666666666666555554443345555544333155556999****9877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 855.93
//
Query:       MMETSP1174-20130828|23204_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 510.36
//
Query:       MMETSP1174-20130828|23210_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 140.79
//
Query:       MMETSP1174-20130828|23208_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00061   17.4  11.5    0.00076   17.1   8.0    1.1  1  TIGR01385 TFSII: transcription elongation factor S-II
     0.0077   12.1   2.7     0.0091   11.9   1.9    1.0  1  TIGR01180 aman2_put: putative alpha-1,2-mannosidase
  ------ inclusion threshold ------
       0.02   12.7   4.6      0.025   12.3   3.2    1.1  1  TIGR03891 thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain
      0.034    9.6   2.3      0.035    9.5   1.6    1.1  1  TIGR02712 urea_carbox: urea carboxylase
       0.14    8.4   3.7       0.16    8.2   2.5    1.0  1  TIGR01399 hrcV: type III secretion protein, HrcV family
       0.17    9.6  16.7       0.29    8.8  11.5    1.5  1  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit
       0.47    6.9   5.6       0.55    6.7   3.9    1.1  1  TIGR00860 LIC: cation transporter family protein
        4.8    3.2  14.6          6    2.9  10.1    1.1  1  TIGR02350 prok_dnaK: chaperone protein DnaK


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   8.0   1.5e-06   0.00076      66     175 ..      46     165 ..      38     180 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
    TIGR01385  66 eliksWKkvvikeeksen..pagakeeklqrkesvksakaekkeqavkieqk........KdsssssrnakaklvalavtndkvRdkvrellveaLakesdesasaidpealaveveell 175
                  ++ik +   ++ e+k+++  +  +++ek++r    k++k++++ qa ki q+        K+ + ss  + a+   +++t  kv+ kv + l ++L+   ++s++++++    v+ e ++
  MMETSP1174-20130828|23208_1  46 SFIKAFVDSIDAENKQKQllAEEERKEKKKRDREEKKKKQNAETQAAKIAQPasddihsvKQDKKSSLRKAASALSTQKTRKKVKAKVGQTLDSILKSARNMSSQTVKHSIRCVDTEGMT 165
                  667777778888777776224445566677777777788888889999999999999999777776667778888999*******************999*********99999998665 PP

>> TIGR01180  aman2_put: putative alpha-1,2-mannosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.9   1.8e-05    0.0091     200     301 ..      50     150 ..      36     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    TIGR01180 200 kfsdglqasfrvyfvlqvsrriadvtvesekgkaaektkqyagyklelsedligiadsdekltvrvavsfvsvaqAkknLakekeakafdrirkeareeWnk 301
                   f d++ a+ ++   l  ++r+++  ++ e++k++++ +  a++  +   d+i  +++d+k  +r a s +s ++ +k ++++  ++ +d i k ar+   +
  MMETSP1174-20130828|23208_1  50 AFVDSIDAENKQKQLLAEEERKEKKKRDREEKKKKQNAETQAAKIAQPASDDIHSVKQDKKSSLRKAASALSTQKTRKKVKAKV-GQTLDSILKSARNMSSQ 150
                  477777777788778888888999999999999999999889999999999999*************************99998.99****99999987555 PP

>> TIGR03891  thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.2   4.9e-05     0.025     131     237 ..      37     141 ..      24     146 .. 0.60

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.9e-05
    TIGR03891 131 llallsivsllrafgldleeqlellkrvaeqrkke.kplkkqlrkklralartlnelealaesksaepllkllaersealkayaealaelaeagtlerglrsilasll 237
                  ll l+  +s + +++ d  ++ +  k++      e ++ kk+ +++ ++ ++++++ +a+ ++++++ ++++ ++++++l+++a+al++++++++++ +  ++l+s+l
  MMETSP1174-20130828|23208_1  37 LLQLKCFTSSFIKAFVDSIDAENKQKQLLAE---EeRKEKKKRDREEKKKKQNAETQAAKIAQPASDDIHSVKQDKKSSLRKAASALSTQKTRKKVKAKVGQTLDSIL 141
                  4444444433333333333332222222222...223333333444444444444555555555579***************************99999999999886 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.6   6.9e-05     0.035    1078    1149 ..      45     119 ..      20     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.9e-05
    TIGR02712 1078 erflaeeadsieafkerqqaafeeeraklkkeaeaelkeeke...eaaeeeaeleegavaveselagrlWkvlve 1149
                   ++f+++  dsi+a ++++q   eeer+++kk++++e+k++++   +aa+ ++ ++++ ++v+ + +++l k   +
  MMETSP1174-20130828|23208_1   45 SSFIKAFVDSIDAENKQKQLLAEEERKEKKKRDREEKKKKQNaetQAAKIAQPASDDIHSVKQDKKSSLRKAASA 119 
                   4799999*****998888877788877777777666665555223455555667889999999999988887654 PP

>> TIGR01399  hrcV: type III secretion protein, HrcV family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.5   0.00031      0.16     315     426 ..      68     178 ..      36     192 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00031
    TIGR01399 315 akakeaealsaeasakseaaskkesdk.vaealplilelskdlqesvekealeeeiervrralfedlGvplPeilvrveesleeeefeilleevpvlkatlkadkvlleesea 426
                  +++ke+++   e+++k + a+++ + k  + a   i ++++d+++s+ k+a   + +++r+++ +++G +l +il    + +++++++ +++ v ++ +t  + ++l  +s+ 
  MMETSP1174-20130828|23208_1  68 EERKEKKKRDREEKKKKQNAETQAA-KiAQPASDDIHSVKQDKKSSLRKAASALSTQKTRKKVKAKVGQTLDSILKSARN-MSSQTVKHSIRCVDTEGMTAGEVAMLHIQSRR 178
                  1111222222222222222222222.23567778889999999999999999999****************999766655.88888888887777665555444444444444 PP

>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.5   0.00057      0.29      61     134 ..      59     136 ..      49     147 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00057
    TIGR01144  61 eeaaeiienAn....krkseikeeikkeAeeerekilakaeaeieaekerareelrkevadLavalaekiiekeidek 134
                  ++ ++++++ +    k++++ + + k++Ae++++ki + a  +i+  k+  +++lrk    L+ + + k ++ ++ ++
  MMETSP1174-20130828|23208_1  59 NKQKQLLAEEErkekKKRDREEKKKKQNAETQAAKIAQPASDDIHSVKQDKKSSLRKAASALSTQKTRKKVKAKVGQT 136
                  5555555544400004444445567889*****************************************999998765 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.9    0.0011      0.55     331     421 ..      56     146 ..      31     173 .. 0.37

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0011
    TIGR00860 331 vhkksakkkrklllerlarllkkkeegeekrrpaleake..........lsslelrakkggedleskteeeallksvppseasldlakileevr.iakrlrk 421
                    +   +k+++ll e+ ++++kk++++e+k+++++e++           ++s++   k++ ++ +s             +++++ +ak+ + +  i+k+ r+
  MMETSP1174-20130828|23208_1  56 DAE---NKQKQLLAEEERKEKKKRDREEKKKKQNAETQAakiaqpasddIHSVKQDKKSSLRKAAS--------ALSTQKTRKKVKAKVGQTLDsILKSARN 146
                  332...222333333333333333333333323333332111111111122222222222222222........2222222222222333333222222222 PP

>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  10.1     0.012         6     501     594 ..      58     151 ..      48     153 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.012
    TIGR02350 501 eeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedveekikakteelekaleklaeal 594
                  e+ ++ +   e+ +e+ k+ +ee +++ +a++ + ++ +  ++  +++++++k++++ka ++l ++ ++++v++k+ ++ +++ k ++++++++
  MMETSP1174-20130828|23208_1  58 ENKQKQLLAEEERKEKKKRDREEKKKKQNAETQAAKIAQPASDDIHSVKQDKKSSLRKAASALSTQKTRKKVKAKVGQTLDSILKSARNMSSQT 151
                  44455555556778888889999999999***********99999*****************************9*******999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       620  (0.151146); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.81
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|23209_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|23213_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 895.93
//
Query:       MMETSP1174-20130828|23218_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1174-20130828|23215_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-62  208.0   0.4    6.2e-60  200.3   0.1    2.0  2  TIGR01351 adk: adenylate kinases
    1.8e-35  120.2   1.7      5e-28   95.9   0.0    3.0  3  TIGR01360 aden_kin_iso1: adenylate kinase
      5e-29   99.4   1.9    1.5e-22   78.3   0.0    3.0  3  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    4.4e-06   24.4   1.7      0.027   12.0   0.0    3.9  3  TIGR00041 DTMP_kinase: thymidylate kinase
    5.9e-06   23.9   0.0      0.023   12.2   0.0    2.1  2  TIGR03263 guanyl_kin: guanylate kinase
    0.00029   18.4   0.1    0.00068   17.2   0.0    1.6  2  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0022       1.5     170     209 ..       2      39 ..       1      42 [. 0.89
   2 !  200.3   0.1     9e-63   6.2e-60       2     211 ..      98     298 ..      97     299 .. 0.95

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0022
    TIGR01351 170 RlevYkeqteplieyYkkkgklveidaekkieevlkeile 209
                  R+++Y+++   ++++Y++k  l+++d++++  +v ++i +
  MMETSP1174-20130828|23215_1   2 RIDTYRKNYPDIVDHYAEK--LTKVDGNSTPADVSTKIVR 39 
                  9***************987..9999999999999998876 PP

  == domain 2    score: 200.3 bits;  conditional E-value: 9e-63
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkvecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                  ++l GpP++GKGTq+  ++e++g+vh+stG++lR++v++ telgkk+ e+le+G+lvpd++vi++v  rl e++ ee+g+iLDGfPRtl+Qa+aL++     +++ + vi l+v+de+   ri gRr++p +g++ynl++ +p+   d++ + +l+qR+DD +++ + R+  Yke+++ + ++Y++k  lv+id++++ +ev++++ e++
  MMETSP1174-20130828|23215_1  98 IILEGPPAAGKGTQCDAIKEQMGCVHLSTGEILRENVNRATELGKKVFEFLERGELVPDDLVIDIVIARLMESDVEESGCILDGFPRTLAQAQALSRS----NVNPTRVIMLEVTDETTAARIVGRRLDPLTGTTYNLDHLPPQ--SDEVRG-RLVQRKDDLADAQRVRMANYKENISAIADHYRDK--LVRIDGNRSPSEVTQDVVEVV 298
                  6899********************************************************************9999********************75....6789*************************************4..665555.7777***************************987..99*************998876 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0038       2.6     144     183 ..       2      39 ..       1      44 [. 0.91
   2 !   95.9   0.0   7.3e-31     5e-28       3     127 ..      95     219 ..      93     225 .. 0.95
   3 !   16.7   0.2   1.4e-06   0.00096     127     185 ..     242     298 ..     240     300 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0038
    TIGR01360 144 rletykkatepvieyyeskgkllkinaegtvddvflevva 183
                  r++ty k+   ++++y    kl+k++ + t+ dv +++v 
  MMETSP1174-20130828|23215_1   2 RIDTYRKNYPDIVDHYAE--KLTKVDGNSTPADVSTKIVR 39 
                  899*************99..99************999986 PP

  == domain 2    score: 95.9 bits;  conditional E-value: 7.3e-31
    TIGR01360   3 vkiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkr 127
                  v++i + G p +GkGtqc+ i e+ G  hls+G++lre+v+  +e gkk+ + +e+Gelvp d v+d++   l+++  +  G ++dG+pr  +q + + +   +++ v++l+v+++t   r++ r
  MMETSP1174-20130828|23215_1  95 VNLIILEGPPAAGKGTQCDAIKEQMGCVHLSTGEILRENVNRATELGKKVFEFLERGELVPDDLVIDIVIARLMESDVEESGCILDGFPRTLAQAQALSRSNVNPTRVIMLEVTDETTAARIVGR 219
                  5677778999**************************************************************999999999*****************************************987 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.4e-06
    TIGR01360 127 raetsarvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaal 185
                  r++   r+dd +++ + r+  yk++ +++ ++y+   kl++i+ ++++ +v ++vv+ +
  MMETSP1174-20130828|23215_1 242 RGRLVQRKDDLADAQRVRMANYKENISAIADHYRD--KLVRIDGNRSPSEVTQDVVEVV 298
                  6777889**************************98..9****************99865 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.015        10     143     184 ..       2      41 ..       1      42 [. 0.88
   2 !   78.3   0.0   2.2e-25   1.5e-22       4     127 ..     100     220 ..      97     229 .. 0.89
   3 !   15.2   0.3   4.9e-06    0.0033     126     183 ..     242     297 ..     238     299 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.015
    TIGR01359 143 rletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                  r+ ty+++   +++++   +k++k+d++++  +v +++ ++f
  MMETSP1174-20130828|23215_1   2 RIDTYRKNYPDIVDHYA--EKLTKVDGNSTPADVSTKIVRLF 41 
                  899*************6..6899****999999999988777 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 2.2e-25
    TIGR01359   4 vlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvelleka.ikeseeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrg 127
                  + G+P +GkGtqC+ i e+++ vhls+G++lre+++r   e g+ + ++++ G++vP ++ ++++  + ++++ e++  ++dGfPr     +a      ++v+++ v+ l++++e+   r++ r 
  MMETSP1174-20130828|23215_1 100 LEGPPAAGKGTQCDAIKEQMGCVHLSTGEILRENVNRA-TELGKKVFEFLERGELVPDDLVIDIVIARlMESDVEESGCILDGFPRTLAQAQALS---RSNVNPTRVIMLEVTDETTAARIVGRR 220
                  4599********************************65.89999999***************9876551666669999*********99999988...5679*******************9985 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 4.9e-06
    TIGR01359 126 rgqssGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeeveki 183
                  rg+   r+dd  ++ + r+  yke+   + ++++  +k+ +id+++s  ev ++v ++
  MMETSP1174-20130828|23215_1 242 RGRLVQRKDDLADAQRVRMANYKENISAIADHYR--DKLVRIDGNRSPSEVTQDVVEV 297
                  6666789**************************7..79****************9887 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.058        39     165     196 .]       5      37 ..       2      37 .. 0.86
   2 !   12.0   0.0   3.9e-05     0.027       4      30 ..      95     121 ..      92     157 .. 0.75
   3 !    5.1   0.1    0.0052       3.6     129     151 ..     199     221 ..     181     294 .. 0.53

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.058
    TIGR00041 165 kvrekyleladk.ekkivvvdaenkveeveeki 196
                  + r++y  ++d+  +k++ vd++    +v  ki
  MMETSP1174-20130828|23215_1   5 TYRKNYPDIVDHyAEKLTKVDGNSTPADVSTKI 37 
                  6799******************99877777665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.9e-05
    TIGR00041   4 gkfiviEGidGaGKTtqlellkkllke 30 
                   ++i++EG   aGK tq++++k+++  
  MMETSP1174-20130828|23215_1  95 VNLIILEGPPAAGKGTQCDAIKEQMGC 121
                  579*******************99865 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0052
    TIGR00041 129 PdlvilLdidpevalerlskrge 151
                  P  vi+L++++e+  +r+ +r+ 
  MMETSP1174-20130828|23215_1 199 PTRVIMLEVTDETTAARIVGRRL 221
                  66666666666666666666554 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0002      0.14       2      54 ..      96     150 ..      95     155 .. 0.83
   2 !   12.2   0.0   3.4e-05     0.023     119     163 ..     234     279 ..     210     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
    TIGR03263   2 klivisgpsGvGKstlvkklleekeelklsvSattRk..pRegEvdgkdYfFvsk 54 
                  +li++ gp ++GK+t ++++ e+   ++ls     R+  +R+ E   k + F+++
  MMETSP1174-20130828|23215_1  96 NLIILEGPPAAGKGTQCDAIKEQMGCVHLSTGEILREnvNRATELGKKVFEFLER 150
                  69**********************99***99988887334777777777777765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.4e-05
    TIGR03263 119 lppsleeLeeRlkkRgtdseeviekRlekAkkelkaaee.fdyviv 163
                  lpp+ +e++ Rl +R++d +++ + R+++ k++++a+++ +   +v
  MMETSP1174-20130828|23215_1 234 LPPQSDEVRGRLVQRKDDLADAQRVRMANYKENISAIADhYRDKLV 279
                  79********************************986542655555 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     1e-06   0.00068       5      38 ..      98     131 ..      95     143 .. 0.93
   2 ?   -3.4   0.1         2   1.3e+03     104     121 ..     239     256 ..     237     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1e-06
    TIGR00017   5 iaiDGPsaaGKstvakalaeklgykyldsGalYR 38 
                  i ++GP aaGK+t + a+ e++g  +l++G++ R
  MMETSP1174-20130828|23215_1  98 IILEGPPAAGKGTQCDAIKEQMGCVHLSTGEILR 131
                  7899***************************988 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2
    TIGR00017 104 qkvReallkkqrklaknd 121
                   +vR  l++++ +la+ +
  MMETSP1174-20130828|23215_1 239 DEVRGRLVQRKDDLADAQ 256
                  589999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1215.90
//
Query:       MMETSP1174-20130828|23217_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 648.30
//
Query:       MMETSP1174-20130828|23220_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1226.90
//
Query:       MMETSP1174-20130828|23224_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 344.11
//
Query:       MMETSP1174-20130828|23225_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 754.81
//
Query:       MMETSP1174-20130828|23227_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-17   58.7   0.1    1.1e-16   58.5   0.0    1.0  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
    1.7e-16   58.1   0.0    1.8e-16   58.0   0.0    1.0  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
      7e-09   32.8   0.0    8.2e-09   32.5   0.0    1.0  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
      3e-08   31.1   0.0    3.2e-08   31.1   0.0    1.0  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    3.3e-07   27.5   0.0    3.7e-07   27.4   0.0    1.0  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO


Domain annotation for each model (and alignments):
>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.3e-19   1.1e-16       1      65 [.       9      78 ..       9      81 .. 0.83

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 1.3e-19
    TIGR00089  1 kvyietyGCqmNeadsevmaglLkeagyev.....tedeeeADvviiNTCavrekaeekviselkelakl 65
                 ++ +et+GCqmN+ad+e+mag+L + g+++     +++ ++ +vvi+NTC++r++ae+kv+s l+  a +
  MMETSP1174-20130828|23227_1  9 TYVMETMGCQMNVADTERMAGQLDDIGIQRldtdlADKRQKPNVVILNTCSIRDHAEQKVYSALGPHAIR 78
                 6789********************9887762222256789999********************9876555 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.2e-19   1.8e-16       2      68 ..      10      81 ..       9      82 .] 0.84

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.2e-19
    TIGR01574  2 lfiktyGCqmnvadsekmadlllakgye.....ltedveeadvlllntCsvrekaeekvfgelGrfkklkkk 68
                 + ++t+GCqmnvad+e+ma+ l+  g +     l+++ ++ +v++lntCs+r +ae+kv++ lG +   k+k
  MMETSP1174-20130828|23227_1 10 YVMETMGCQMNVADTERMAGQLDDIGIQrldtdLADKRQKPNVVILNTCSIRDHAEQKVYSALGPHAIRKRK 81
                 789*****************99876654221227888999************************98776665 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0     1e-11   8.2e-09       3      56 ..      11      69 ..       9      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1e-11
    TIGR01578  3 yvetyGCalnkadseiiknklkkaGyelve.....kaeeAdlailntCtVkkktEdkll 56
                  +et GC +n ad+e ++++l + G + ++     k +  +++ilntC ++ ++E+k+ 
  MMETSP1174-20130828|23227_1 11 VMETMGCQMNVADTERMAGQLDDIGIQRLDtdladKRQKPNVVILNTCSIRDHAEQKVY 69
                 579**********************9877655544778899***************985 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.9e-11   3.2e-08       1      55 [.      12      71 ..      12      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 3.9e-11
    TIGR01579  1 ietlGCrvNqyeseslkaeliqkgyevvrddek.....adviiiNtCtVTakadskarkl 55
                 +et+GC++N  ++e ++ +l   g + +  d        +v+i+NtC++  +a++k+ ++
  MMETSP1174-20130828|23227_1 12 METMGCQMNVADTERMAGQLDDIGIQRLDTDLAdkrqkPNVVILNTCSIRDHAEQKVYSA 71
                 58**********************9998876444456699***************98765 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.5e-10   3.7e-07       5      60 ..      13      73 ..      10      81 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.5e-10
    TIGR01125  5 vsLGCpknlvDsevllgkLreaGye.....vvaevedaDvvivntCafiedakeesleail 60
                  ++GC+ n +D+e+++g+L + G +     ++ + ++ +vvi+ntC+  ++a++   +a++
  MMETSP1174-20130828|23227_1 13 ETMGCQMNVADTERMAGQLDDIGIQrldtdLADKRQKPNVVILNTCSIRDHAEQKVYSALG 73
                 679******************997522222566777889*************999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1174-20130828|23228_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 246.38
//
Query:       MMETSP1174-20130828|23231_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|23230_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 825.70
//
Query:       MMETSP1174-20130828|23234_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.61
# Mc/sec: 157.95
//
Query:       MMETSP1174-20130828|23237_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 579.81
//
Query:       MMETSP1174-20130828|23239_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   34.4   0.5    9.3e-09   32.0   0.3    2.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.3   2.3e-12   9.3e-09     583     737 ..      55     232 ..       8     236 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 2.3e-12
    TIGR01970 583 veredqvdwdekkgklkaerqlk.vgqlvlkseklakpdeakiaaalleavrqkGLsvLnwt..eelrqlrarvallrellpeadwPd...lsdeaLlasLeeWLePylagvsslkaldeldlldalknllpWelq.................qkldellParlevptGseiairYee 737
                  + ++d+     ++g+++ +r +k +g+lv+++e+l+ p ++ ++a ll++  ++    L+ +  e l qlr r++l+r   p++ wP       + L a++e WL P l  v+ +kal++l++  +l ++   e q                  +l +  P +++vp+Gs+  ++Y+e
  MMETSP1174-20130828|23239_1  55 IRTSDVTFTAPSDGRVRCKRVTKlLGNLVVHEENLPPPPPEVLTALLLKQASEDLRGCLSQSqfETLVQLRRRLTLARLAAPHQSWPPshlWTVDRLQADVEVWLGPWLPSVQDVKALRKLNIERILLSYGAIEAQtedgqgggggvadncfsDRLATVSPKKIQVPSGSSLSLDYQE 232
                  566666666668899*****99846*************************998766666554227899*******************72222457799*************************9988765444333111111111111111115677777888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 987.92
//
Query:       MMETSP1174-20130828|23240_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-63  210.7   0.5    9.1e-63  210.4   0.4    1.0  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
    1.5e-21   74.6   0.9    1.7e-21   74.4   0.6    1.0  1  TIGR00518 alaDH: alanine dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   0.4   4.4e-66   9.1e-63       2     176 ..      52     226 .]      51     226 .] 0.98

  Alignments for each domain:
  == domain 1    score: 210.4 bits;  conditional E-value: 4.4e-66
    TIGR00561   2 igvpreslenesrvaatpktvqkllklgfdvlvesgagakasfedkafveagaeivegaeveqsdiilkvnapsdeeiaelkegkalvsfiwpaqnpellkklaaknitvlamdavpri.sraqkldalssmaniagyraiieaahefgrfftgqitaagkvppakvlvigagvag 176
                  +g+pre+   e rv  +p+++ kl k gf+v ve+gag+ a + d +++ +ga iv+ a+v++sdii k+++p+ ee a l+  + l+s+i p  n el+ +l +++ t +a+d++pr+ sr q+ d lss aniagyra+ie+a+efgrfftgq+taagkvppa vlv+gagvag
  MMETSP1174-20130828|23240_1  52 VGIPRETTAGEQRVGQSPESIAKLVKAGFSVKVEEGAGTSAAISDALYEAVGATIVDHASVWKSDIITKIHPPTLEEAALLE-NRMLISMIQPQLNEELMTQLQEQKATAFALDCIPRLlSRGQAYDVLSSQANIAGYRAVIETANEFGRFFTGQMTAAGKVPPATVLVLGAGVAG 226
                  8****************************************************************************98876.689********************************55*******************************************************8 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.6   8.5e-25   1.7e-21       2     179 ..      51     226 .]      50     226 .] 0.91

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 8.5e-25
    TIGR00518   2 eiGvpkeiknnefrvaltpagvaellsrGhevlveeGaGvGsgfedeaykaaGaelvatakqvwdaelvlkvkeplpeeyeylrkgkvlftylhlaaereltealldsGvtaiayetve..eadga.lpllapmsevaGrlaaqvGaqylektkGGrGvllgGvpGveagkvtiiGgGvvG 179
                   +G+p+e+   e rv+ +p ++a+l++ G  v veeGaG  ++++d+ y+a Ga +v  a  vw+++++ k+  p  ee   l + ++l + +    + el   l+++  ta a + +   +++g+   +l+  +++aG  a+   a+ + +   G+    g vp   ++ v ++G+Gv+G
  MMETSP1174-20130828|23240_1  51 VVGIPRETTAGEQRVGQSPESIAKLVKAGFSVKVEEGAGTSAAISDALYEAVGATIVDHA-SVWKSDIITKIHPPTLEEAALL-ENRMLISMIQPQLNEELMTQLQEQKATAFALDCIPrlLSRGQaYDVLSSQANIAGYRAVIETANEFGRFFTGQMTAAGKVP---PATVLVLGAGVAG 226
                  69*****************************************************99776.7*************99997655.6789999*************************9962346765278************************999977766666...899********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1065.34
//
Query:       MMETSP1174-20130828|23236_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1805.04
//
Query:       MMETSP1174-20130828|23244_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 336.36
//
Query:       MMETSP1174-20130828|23243_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1064.43
//
Query:       MMETSP1174-20130828|23245_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 691.00
//
Query:       MMETSP1174-20130828|23248_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 577.45
//
Query:       MMETSP1174-20130828|23249_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-35  119.2   0.0      5e-35  119.1   0.0    1.0  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   1.2e-38     5e-35      23     139 ..       2     119 ..       1     120 [] 0.96

  Alignments for each domain:
  == domain 1    score: 119.1 bits;  conditional E-value: 1.2e-38
    TIGR02411  23 dfdkkklaGsvtyklkskeenkeklvLdtsyleikevtinglkadfeieerkealGsklkislpsetskn.kelelkieyettdkctaLqflepeqtkGkkaPylfsqcqaiharsll 139
                  df++++l+G++t+++++ e + ek+vLdt++l i+ vt++g +a++++ e++e +Gs+l+i+lp+++s n  + ++ ++y+t+++++a+q+l p qt+Gk +Pylf+qcqaihars++
  MMETSP1174-20130828|23249_1   2 DFESNVLSGTATLTVEAVEGSVEKVVLDTRDLAIESVTVDGVEAKYKLLEAHEVFGSALSIDLPQALSGNgLKASVAVTYKTSPDSSAMQWLPPAQTAGKVKPYLFTQCQAIHARSIV 119
                  8***************************************************************99987625899*****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|23251_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 445.46
//
Query:       MMETSP1174-20130828|23252_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 276.75
//
Query:       MMETSP1174-20130828|23256_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|23257_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.78
# Mc/sec: 155.68
//
Query:       MMETSP1174-20130828|23262_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1174-20130828|23265_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.45
# Mc/sec: 662.88
//
Query:       MMETSP1174-20130828|23263_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 750.87
//
Query:       MMETSP1174-20130828|23267_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 617.52
//
Query:       MMETSP1174-20130828|23266_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 842.70
//
Query:       MMETSP1174-20130828|23269_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-14   51.5   0.0      1e-13   49.4   0.0    1.7  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    2.6e-12   45.0   0.0    3.6e-12   44.5   0.0    1.2  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    7.6e-12   43.2   0.0    1.5e-11   42.3   0.0    1.5  2  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    1.4e-10   38.8   0.0    2.8e-10   37.9   0.0    1.4  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
      6e-08   30.8   0.1    2.2e-07   29.0   0.0    1.8  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.2e-07   29.3   0.6    5.1e-07   27.3   0.1    1.9  2  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    8.6e-07   27.3   0.0    0.00012   20.4   0.0    2.2  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    1.8e-06   25.3   0.5      4e-06   24.2   0.0    1.7  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    8.4e-06   23.8   0.0    5.9e-05   21.0   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    1.2e-05   23.4   0.0    1.7e-05   22.9   0.0    1.3  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
    9.8e-05   19.7   0.0    0.00015   19.1   0.0    1.2  1  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
     0.0001   20.0   0.0    0.00018   19.2   0.0    1.3  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    0.00024   18.5   0.1    0.00072   17.0   0.0    1.8  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
     0.0022   15.8   0.0     0.0032   15.3   0.0    1.2  1  TIGR01990 bPGM: beta-phosphoglucomutase
      0.007   13.7   0.0      0.087   10.1   0.0    2.2  1  TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
  ------ inclusion threshold ------
      0.052   10.2   0.0      0.078    9.7   0.0    1.1  1  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family


Domain annotation for each model (and alignments):
>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.78     2e+02       5      34 ..      93     122 ..      91     156 .. 0.73
   2 !   49.4   0.0   3.9e-16     1e-13      95     200 ..     205     307 ..     182     318 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.78
    TIGR02253   5 vfFDlddTLidtsklaekalrevvevliee 34 
                  v  D+ddTL +t +    a + +  ++ ++
  MMETSP1174-20130828|23269_1  93 VTLDIDDTLCETFPPILLANEWLLGAMRSY 122
                  6789*****999877777766666666665 PP

  == domain 2    score: 49.4 bits;  conditional E-value: 3.9e-16
    TIGR02253  95 vypdvvkvLleLresGyrlgliTdgltekqweklerlgvrdfFdavivseelgveKPhpkiFkaalkrlg.vkpeeavmvGDrlekDikGaknlglktvwinrgksk 200
                   y+d+   L  L++ G+ +g++T+g++ +    +    + ++Fd  +   ++g+ KP+   F aa++++g v p   v vGD l +D+ Ga ++g+ +v+++r    
  MMETSP1174-20130828|23269_1 205 LYSDTLPALQALKDRGMVIGALTNGNADVFLDPV----LAPYFDFSVSAVDAGASKPAIAPFLAAARAAGdVTPSRFVHVGDDLSTDVAGALRAGMRAVYLDRPAMV 307
                  6889999*********************998887....579**************************9966*****************************9986655 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-14   3.6e-12      85     195 ..     196     306 ..     124     308 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.4e-14
    TIGR01428  85 eavkrLepf..pdvaagLkkLkerglklviLsNgstatlkslvkkagldlefdallsadavraYKPapkvYelalealg.vkpeevllvasna.wDlkgAkklGlktvwvnRpge 195
                  ++ +rL p+  +d++ +L++Lk rg+ + +L+Ng+ + + + v    l+ +fd   sa +++a KPa + +  a++a g v+p++ ++v      D++gA ++G+++v++ Rp++
  MMETSP1174-20130828|23269_1 196 KERSRLAPHlySDTLPALQALKDRGMVIGALTNGNADVFLDPV----LAPYFDFSVSAVDAGASKPAIAPFLAAARAAGdVTPSRFVHVGDDLsTDVAGALRAGMRAVYLDRPAM 306
                  566777774449*****************************99....5578**********************999985499**********989*****************976 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.9   9.9e+02       2      13 ..      92     103 ..      91     107 .. 0.86
   2 !   42.3   0.0   5.9e-14   1.5e-11     105     203 .]     204     300 ..     168     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.9
    TIGR02252   2 litlDvvdTLla 13 
                  ++tlD+ dTL +
  MMETSP1174-20130828|23269_1  92 VVTLDIDDTLCE 103
                  79*******976 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 5.9e-14
    TIGR02252 105 kvvedlekllkklreeglklgvvSN..fDsrlrklLealgleelfdfvvvSaevgaeKPdpkIFekaleklg.ikpeevlhiGDslekDvegakaaGlrall 203
                  ++++d+ ++l++l+++g+ +g + N  +D  l ++     l+ +fdf v   ++ga KP  + F  a + +g + p+  +h+GD+l +Dv ga  aG+ra++
  MMETSP1174-20130828|23269_1 204 HLYSDTLPALQALKDRGMVIGALTNgnADVFLDPV-----LAPYFDFSVSAVDAGASKPAIAPFLAAARAAGdVTPSRFVHVGDDLSTDVAGALRAGMRAVY 300
                  5799*******************972245555555.....689**************************9999**************************986 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       7.7     2e+03       4      14 ..      93     103 ..      92     104 .. 0.80
   2 !   37.9   0.0   1.1e-12   2.8e-10      66     210 ..     167     315 ..     158     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 7.7
    TIGR02254   4 llfDlDdtlld 14 
                  + +D+Ddtl +
  MMETSP1174-20130828|23269_1  93 VTLDIDDTLCE 103
                  568*****976 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 1.1e-12
    TIGR02254  66 tRFeellkelnte.aDelklnkefl.eileekarllpg....AlelleaLkkk.lrlyivtnGvrevqekrlrksglapffdrvlvsEdaGiekPdkkiFafaleri.klkkeevlmvGDsleaDikGaanaGldtvwlnpdrkpkpddiapa 210
                  t  +e+++  +   +D ++ ++  +  +++e+ rl p+     l  l+aLk + + ++ +tnG   v      +  lap+fd+ + + daG  kP    F  a   + +++ ++ + vGD+l++D+ Ga  aG+ +v+l+     ++dd+a +
  MMETSP1174-20130828|23269_1 167 TAIQEWFQARGLSlSDAAAGASSLMpLFIKERSRLAPHlysdTLPALQALKDRgMVIGALTNGNADV----FLDPVLAPYFDFSVSAVDAGASKPAIAPFLAAARAAgDVTPSRFVHVGDDLSTDVAGALRAGMRAVYLDRPAMVETDDVAAH 315
                  5555666555443134444333333146777778777732224556777777777788888888776....57889************************99998889*******************************99999999998765 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.6   4.1e+02       2      17 ..      93     108 ..      92     166 .. 0.64
   2 !   29.0   0.0   8.4e-10   2.2e-07      54     152 ..     193     299 ..     180     301 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.6
    TIGR01509   2 ilFDlDgvLvdtekgl 17 
                  +  D+D++L +t +++
  MMETSP1174-20130828|23269_1  93 VTLDIDDTLCETFPPI 108
                  5679999999887763 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 8.4e-10
    TIGR01509  54 laleeieeeelkllpgleellealrargl..allTnspravrlg..ledkfdkvid..dvgsgKPdpdiylqalkklglk.peeclfv.dDsaagieaakaaGmktv 152
                  l+++e  + +++l+ ++ + l+al+ rg+  + lTn+++ v l+  l+ +fd+ ++  d+g +KP+ + +l+a+++ g   p+++++v dD    +++a +aGm++v
  MMETSP1174-20130828|23269_1 193 LFIKERSRLAPHLYSDTLPALQALKDRGMviGALTNGNADVFLDpvLAPYFDFSVSavDAGASKPAIAPFLAAARAAGDVtPSRFVHVgDDLSTDVAGALRAGMRAV 299
                  677888899999****************72256****9998887558899**9999899****************998555*******8899999*********998 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.47   1.2e+02       1      27 [.      93     119 ..      93     127 .. 0.84
   2 !   27.3   0.1     2e-09   5.1e-07      84     184 ..     203     301 ..     167     323 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.47
    TIGR01449   1 vlfDLDGtLvdsAPdlaaavnkaLaal 27 
                  v +D+D tL +  P ++ a +  L a+
  MMETSP1174-20130828|23269_1  93 VTLDIDDTLCETFPPILLANEWLLGAM 119
                  789*************99988777665 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 2e-09
    TIGR01449  84 tsvfpgveaaleaLrakGlrlglvtnkPe.alarplLellglakylevligGdslaqrkPdPePLllaaerl.gvepaqmvyvGDs.evDiaaArAAGlpsvll 184
                   +++     al+aL+ +G+++g  tn     +  p+     la y++  ++  +    kP  +P l+aa +  +v+p   v+vGD+  +D+a A  AG++ v l
  MMETSP1174-20130828|23269_1 203 PHLYSDTLPALQALKDRGMVIGALTNGNAdVFLDPV-----LAPYFDFSVSAVDAGASKPAIAPFLAAARAAgDVTPSRFVHVGDDlSTDVAGALRAGMRAVYL 301
                  4677888889****************6531333444.....57899999999999999*********99876379**********9457***********9876 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.029       7.3       1      16 [.      92     107 ..      92     122 .. 0.80
   2 !   20.4   0.0   4.7e-07   0.00012      76     149 .]     220     295 ..     202     295 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.029
    TIGR01549   1 ailfDidGTLvdseak 16 
                  ++++Did+TL+ ++ +
  MMETSP1174-20130828|23269_1  92 VVTLDIDDTLCETFPP 107
                  589********99865 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 4.7e-07
    TIGR01549  76 gyrlgiiSngslraqklllrkledyfelilvsdepg.sKpepeiflaaleslgl..epevlhvGDn.lsDieaaknag 149
                  g+ +g ++ng+ +   +l   l  yf++ + + + g sKp  + flaa++++g    ++ +hvGD+  +D+++a +ag
  MMETSP1174-20130828|23269_1 220 GMVIGALTNGNADV--FLDPVLAPYFDFSVSAVDAGaSKPAIAPFLAAARAAGDvtPSRFVHVGDDlSTDVAGALRAG 295
                  55556666666554..444447899999999999999**************995335789***************998 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.6e-08     4e-06     176     223 ..     253     301 ..     238     326 .. 0.81
   2 ?   -1.2   0.1      0.84   2.2e+02     204     218 ..     322     336 ..     300     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.6e-08
    TIGR01458 176 vvGkPskeffkealralG.vepeeavmiGddlvddvGGaqavGmrgvqv 223
                     kP    f  a ra G v p + v +Gddl  dv Ga + Gmr+v +
  MMETSP1174-20130828|23269_1 253 GASKPAIAPFLAAARAAGdVTPSRFVHVGDDLSTDVAGALRAGMRAVYL 301
                  456999999999999998799*************************976 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.84
    TIGR01458 204 ddlvddvGGaqavGm 218
                   d  dd GGaq+ G 
  MMETSP1174-20130828|23269_1 322 QDTEDDGGGAQQPGA 336
                  6999*******9886 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.4   3.7e+02       2      13 ..      92     103 ..      91     115 .. 0.81
   2 !   21.0   0.0   2.3e-07   5.9e-05      26     138 ..     205     301 ..     196     304 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.4
    TIGR01662   2 lvvlDlDgtLid 13 
                  +v lD+D tL +
  MMETSP1174-20130828|23269_1  92 VVTLDIDDTLCE 103
                  689*******85 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 2.3e-07
    TIGR01662  26 lypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                  ly ++ +al+ lk++G+ +  +tN +               ++ +l++    +d+ + +   +  + Kp +  ++ a + + ++++++ v vGD++ tD+ +a r+G+++v +
  MMETSP1174-20130828|23269_1 205 LYSDTLPALQALKDRGMVIGALTNGN-----------ADVFLDPVLAP---YFDFSVSAV--DAGASKPAIAPFLAAARAAGDVTPSRFVHVGDDLSTDVAGALRAGMRAVYL 301
                  57778888999999999999999999...........12334555555...444444444..66889*****************************************98865 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   6.8e-08   1.7e-05      93     184 ..     208     299 ..     165     301 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.8e-08
    TIGR02009  93 gienlleelkkkkiavalgsssknakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLg.vkpeecvvfED.aeaGveaaraagmfav 184
                  ++   l++lk +++ ++  ++  na+  L+ + l+ +fd+ v+a +   +KPa   FLaaa+  g v+p++ v + D  ++ v++a  agm+av
  MMETSP1174-20130828|23269_1 208 DTLPALQALKDRGMVIGALTN-GNADVFLDPV-LAPYFDFSVSAVDAGASKPAIAPFLAAARAAGdVTPSRFVHVGDdLSTDVAGALRAGMRAV 299
                  556678889999999998775.5888888876.9***************************99866*******8866156789999******99 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.7e-07   0.00015     194     239 ..     255     300 ..     198     302 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.7e-07
    TIGR01459 194 GkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtal 239
                   kP  a f +a + +++    r + vGD l tD+aga+++g+ +++
  MMETSP1174-20130828|23269_1 255 SKPAIAPFLAAARAAGDVTPSRFVHVGDDLSTDVAGALRAGMRAVY 300
                  5899999**********************************98876 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.1e-07   0.00018     197     243 ..     256     301 ..     251     302 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.1e-07
    TIGR01460 197 KPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLv 243
                  KP +a + aa++ +++   +r  + vGD+l tDv gA +aG+  +++
  MMETSP1174-20130828|23269_1 256 KPAIAPFLAAARAAGDVTPSR-FVHVGDDLSTDVAGALRAGMRAVYL 301
                  999999999999999999998.99******************99985 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.8   4.5e+02      28      38 ..      93     103 ..      91     110 .. 0.85
   2 !   17.0   0.0   2.8e-06   0.00072      89     135 ..     254     301 ..     202     311 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.8
    TIGR01668  28 vvlDkDntlve 38 
                  v lD+D+tl e
  MMETSP1174-20130828|23269_1  93 VTLDIDDTLCE 103
                  679*****987 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.8e-06
    TIGR01668  89 avKkpgkafrralk.emgltseqvvvvGDrlfTDvllgnrnGsltilv 135
                  a K+    f +a +   ++t++  v vGD l TDv ++ r G+++++ 
  MMETSP1174-20130828|23269_1 254 ASKPAIAPFLAAARaAGDVTPSRFVHVGDDLSTDVAGALRAGMRAVYL 301
                  55666565555555045799************************9986 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05    0.0032      96     184 ..     211     299 ..     200     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.3e-05
    TIGR01990  96 elleelkkkkikialasasknaklvleklelkdkfdaivdaaevkkgkPdPeiFlaaaekl.gvspeecigieDa.eaGieaikaagilav 184
                    l+ lk++++ i+ a +  na + l+ + l+ +fd+ v a +   +kP+   Flaaa++  +v+p++ + + D  ++ + ++ +ag+ av
  MMETSP1174-20130828|23269_1 211 PALQALKDRGMVIG-ALTNGNADVFLDPV-LAPYFDFSVSAVDAGASKPAIAPFLAAARAAgDVTPSRFVHVGDDlSTDVAGALRAGMRAV 299
                  56788888888887.55677999888876.99**************************98736********97652778*********998 PP

>> TIGR01691  enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00034     0.087      94     165 ..     199     259 ..     196     323 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00034
    TIGR01691  94 gelkadlypDvlpaleawkkaGlrlavYssGsvaaqkLlfghsdaGdltklfsgyfDtsvGakkeaqsYkki 165
                  + l  +ly D lpal+a k+ G+ +     G             +  l + +  yfD sv a    +s   i
  MMETSP1174-20130828|23269_1 199 SRLAPHLYSDTLPALQALKDRGMVIGALTNGNA-----------DVFLDPVLAPYFDFSVSAVDAGASKPAI 259
                  56889******************9977666642...........2235555666666665555555555555 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0003     0.078     268     315 ..     279     326 ..     265     328 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0003
    TIGR01456 268 mvGDnPksDiiGarqaglfsilvktgvydgkdelkefkadlvvdsvee 315
                   vGD+  +D+ Ga +ag+  +++ +    ++d+  + ++++  ++ e+
  MMETSP1174-20130828|23269_1 279 HVGDDLSTDVAGALRAGMRAVYLDRPAMVETDDVAAHGTTQPCQDTED 326
                  69**********************************999998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1012.87
//
Query:       MMETSP1174-20130828|23270_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1174-20130828|23276_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 835.93
//
Query:       MMETSP1174-20130828|23275_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1550.87
//
Query:       MMETSP1174-20130828|23277_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 642.91
//
Query:       MMETSP1174-20130828|23281_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|23281_2  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 472.96
//
Query:       MMETSP1174-20130828|23282_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   54.5   0.5    4.2e-15   53.7   0.4    1.4  1  TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family


Domain annotation for each model (and alignments):
>> TIGR01197  nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.4     1e-18   4.2e-15     321     387 ..       1      67 [.       1      70 [. 0.96

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1e-18
    TIGR01197 321 seGflnlklsrflRrlitraiaiiPtlvvavvadredlskaldlsqvvlslllpfaviPlilftssk 387
                  +eGfl+l++ ++ R ++tr +a++P+++v+v a   +l+ + +  +++l++llpfa+ Pli f +s 
  MMETSP1174-20130828|23282_1   1 MEGFLQLEFAPWKRAVLTRLVALVPCVIVSVGASGDALNILVNYVNALLAILLPFALTPLIKFSTST 67 
                  8**************************************************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 713.57
//
Query:       MMETSP1174-20130828|23285_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 193.58
//
Query:       MMETSP1174-20130828|23283_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 156.43
//
Query:       MMETSP1174-20130828|23280_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   22.7   0.0    2.7e-05   22.2   0.0    1.3  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.6e-09   2.7e-05      13      71 ..     120     178 ..     117     223 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.6e-09
    TIGR00229  13 sspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle 71 
                  +s+ a++++d +G +++ N +f  ++G+++ +l++r++++ +  ++  +  +++ ++ e
  MMETSP1174-20130828|23280_1 120 QSKLAWALTDTSGAFVDCNAKFSSLSGFEKYDLCKRTIMDHVLADQMPACIKVLTEIVE 178
                  57779***********************************6666655555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 927.92
//
Query:       MMETSP1174-20130828|23287_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|23288_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 876.26
//
Query:       MMETSP1174-20130828|23290_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1047.11
//
Query:       MMETSP1174-20130828|23294_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.38
# Mc/sec: 1038.55
//
Query:       MMETSP1174-20130828|23292_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1145.32
//
Query:       MMETSP1174-20130828|23295_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-57  192.0   1.6    1.8e-57  191.6   1.1    1.1  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    1.6e-12   45.7   1.1    3.9e-11   41.2   0.8    2.2  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    2.6e-06   25.0   0.3     0.0009   16.7   0.1    3.0  2  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID
     0.0068   15.1   0.1      0.026   13.2   0.0    1.9  2  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.011   13.0   0.1      0.018   12.4   0.0    1.3  1  TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   1.1   2.3e-60   1.8e-57       1     168 []     122     286 ..     122     286 .. 0.98

  Alignments for each domain:
  == domain 1    score: 191.6 bits;  conditional E-value: 2.3e-60
    TIGR02251   1 kktlvLDLDeTLvhsslkkakaieadlklevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfisdenDeeLlklipflealrkeddvrsll 168
                  +k+lvLDLDeTL+hss+++     a+++++v ie+k + +yVlkRP vdeFl+++++ +e++++Tasl++Yad++ld+ld+ +kv+++rl+Resc+++ g+yvK+lsl+ +dls+++i+Dnsp+sy+++p+Nai + +++++++D+eL ++  fl +++   dvrs+l
  MMETSP1174-20130828|23295_1 122 RKCLVLDLDETLLHSSFRQVG--YANYIIPVNIENKVHNIYVLKRPCVDEFLKKVAEHFEVIIYTASLSKYADPLLDQLDT-EKVIQHRLFRESCTFHDGMYVKNLSLLDRDLSQTIIVDNSPVSYMFHPRNAIGCYTWTDEMEDRELEDIGDFLVNIKDVPDVRSHL 286
                  689******************..99*******************************************************5.55*********************************************************************************985 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.8   4.7e-14   3.9e-11       6     147 ..     122     251 ..     118     257 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 4.7e-14
    TIGR02250   6 kLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdest..saktKsLkkllpadesavviiDdredvWkksk.nL 147
                  +  LvlDlD+tl+h++  +    +    + +           ++ +   +++v  RP v+eflkkv++ +e+ +yt +  +Ya  +++ lD ek+  ++r+   + ++   + +K+L +ll  d s+ +i+D++   ++ ++ n 
  MMETSP1174-20130828|23295_1 122 RKCLVLDLDETLLHSSFRQVGYANYI-IPVN-----------IENK-VHNIYVLKRPCVDEFLKKVAEHFEVIIYTASLSKYADPLLDQLDTEKV-IQHRLFRESCTFhdGMYVKNL-SLLDRDLSQTIIVDNSPVSYMFHPrNA 251
                  5579**********987766555322.2221...........1122.23567888************************************8765.588877554444435778885.6788899********988888777665 PP

>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.1e-06    0.0009      15      81 ..     116     198 ..     103     210 .. 0.72
   2 ?    3.5   0.0     0.012       9.9     131     189 ..     233     288 ..     218     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.1e-06
    TIGR02245  15 nppregkkllvldidytlld..hrsa...........aedvve...lmrpylhefltaayeeydiviwsatsmkwielklkel 81 
                  +p+ +++k lvld+d tll   +r +           +++v +   l+rp ++efl +  e+++++i++a+  k+ +  l++l
  MMETSP1174-20130828|23295_1 116 TPANKARKCLVLDLDETLLHssFRQVgyanyiipvniENKVHNiyvLKRPCVDEFLKKVAEHFEVIIYTASLSKYADPLLDQL 198
                  6888999**********9953355322211111121122222233389**********************9999998888777 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.012
    TIGR02245 131 ntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiaeledlss.ldh 189
                   ti +d+    ++  p+n +    +    ++  +d+el  + ++l +i +++d+ s l+h
  MMETSP1174-20130828|23295_1 233 QTIIVDNSPVSYMFHPRNAIGCYTW----TDEMEDRELEDIGDFLVNIKDVPDVRShLQH 288
                  6899999999999999998765444....3467899*****************9642555 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.2e-05     0.026       1      56 [.     123     187 ..     123     218 .. 0.73
   2 ?   -1.1   0.0      0.85   6.9e+02      20      47 ..     257     292 ..     229     295 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.2e-05
    TIGR01681   1 kvivfDlDnTLwtdeed..........vvkedpiedieltevt...ikeirdvLqelkkn.GvllalaSk 56 
                  k++v+DlD+TL    +           v++e+++++i     +   ++ + ++L++ ++   v++ +aS 
  MMETSP1174-20130828|23295_1 123 KCLVLDLDETLLHSSFRqvgyanyiipVNIENKVHNI-----YvlkRPCVDEFLKKVAEHfEVIIYTASL 187
                  79************99999999966655555554444.....3345678999999998885666666664 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.85
    TIGR01681  20 kedpiedieltevt........ikeirdvLqelkkn 47 
                    d++ed el++          ++++r  Lq ++k 
  MMETSP1174-20130828|23295_1 257 WTDEMEDRELEDIGdflvnikdVPDVRSHLQHWRKG 292
                  334444444443333333322345566667777765 PP

>> TIGR02137  HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05     0.018      60     118 ..     152     212 ..     133     237 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-05
    TIGR02137  60 iqeviatlklle..gavefvdtlreeaqvvilsdtfqefaqplmkqlgfptllchklvved 118
                  i++ + ++ +l+     ef+  + e+++v+i + ++ ++a pl+ ql    ++ h+l  e 
  MMETSP1174-20130828|23295_1 152 IENKVHNIYVLKrpCVDEFLKKVAEHFEVIIYTASLSKYADPLLDQLDTEKVIQHRLFRES 212
                  555555665555224579*************************************997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1448.00
//
Query:       MMETSP1174-20130828|23300_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 391.71
//
Query:       MMETSP1174-20130828|23298_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   14.8   0.4     0.0033   13.8   0.3    1.4  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3     8e-07    0.0033      99     227 ..     139     272 ..     112     292 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8e-07
    TIGR00894  99 lakkygtkkvigaalllssvlsll...iPiaaavg.valvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd.lgWpavfYifgivgtvvlilwlvlvyddPseHp 227
                   a++ g+k vi  a +l  + +ll   +P   +   + ++i+  +l Gla+     +  +l   W+  +ER+ ++++ +   q+G + ++  +  i+ +   g ++ f  ++i + v+  + ++++  +P + p
  MMETSP1174-20130828|23298_1 139 TAERIGIKTVIHGAGALMAIGCLLrsgVPFLGGLPnYSFIILGTILVGLAQPYFQCSPPQLSSTWFGTNERAVATAIAINFNQIGIATAFITAAAIATVAdTGLKTYFSTITIFAIVLAGATILFFKSEPPTPP 272
                  688889999996666666665555444998888751566888899*****************************************999999998888766788888877777777777776666666676655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.48
# Mc/sec: 1905.59
//
Query:       MMETSP1174-20130828|23303_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1174-20130828|23307_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1174-20130828|23299_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 779.16
//
Query:       MMETSP1174-20130828|23306_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|23309_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   18.5   0.6       0.61    7.2   0.0    3.5  4  TIGR02604 Piru_Ver_Nterm: putative membrane-bound dehydrogenase domain


Domain annotation for each model (and alignments):
>> TIGR02604  Piru_Ver_Nterm: putative membrane-bound dehydrogenase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00015      0.61     323     344 ..      30      51 ..      22      70 .. 0.82
   2 ?   -1.6   0.0     0.069   2.8e+02     186     202 ..      78      94 ..      56     102 .. 0.70
   3 !    3.7   0.0    0.0017       6.9     321     343 ..     130     153 ..     111     166 .. 0.83
   4 !    3.3   0.0    0.0023       9.5     323     337 ..     179     193 ..     170     213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00015
    TIGR02604 323 pvdvtvgpDGalYvaDwydeev 344
                  p+     pDG+lYvaD+ ++ +
  MMETSP1174-20130828|23309_1  30 PSSASLSPDGTLYVADIGHKAI 51 
                  7788899*********977665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.069
    TIGR02604 186 pygasvdsfGdvfvtdn 202
                  p    ++s+G++f+td+
  MMETSP1174-20130828|23309_1  78 PSALTFTSNGELFFTDT 94 
                  44455666666666664 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0017
    TIGR02604 321 frpvdvtvgpDG.alYvaDwydee 343
                    p  v+  pDG ++Yv+ + +++
  MMETSP1174-20130828|23309_1 130 AHPCGVASSPDGsCIYVCEMAKNR 153
                  56888999****779****99876 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.0023
    TIGR02604 323 pvdvtvgpDGalYva 337
                  p+ v+v+ DG+lYva
  MMETSP1174-20130828|23309_1 179 PSSVAVARDGTLYVA 193
                  899***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1113.11
//
Query:       MMETSP1174-20130828|23310_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.56
# Mc/sec: 796.65
//
Query:       MMETSP1174-20130828|23308_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.49
# Mc/sec: 565.67
//
Query:       MMETSP1174-20130828|23312_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.55
# Mc/sec: 297.58
//
Query:       MMETSP1174-20130828|23314_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.49
# Mc/sec: 137.38
//
Query:       MMETSP1174-20130828|23315_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.97
# Mc/sec: 159.20
//
Query:       MMETSP1174-20130828|23317_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 510.93
//
Query:       MMETSP1174-20130828|23321_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 536.21
//
Query:       MMETSP1174-20130828|23320_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 928.32
//
Query:       MMETSP1174-20130828|23322_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 177.68
//
Query:       MMETSP1174-20130828|23319_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 1464.10
//
Query:       MMETSP1174-20130828|23328_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 232.92
//
Query:       MMETSP1174-20130828|23333_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   18.6   0.2     0.0005   16.8   0.0    1.7  2  TIGR00846 caca2: calcium/proton exchanger
    0.00077   16.6   0.0     0.0013   15.9   0.0    1.3  1  TIGR00378 cax: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.045        92     167     197 ..      12      43 ..       2      60 .. 0.65
   2 !   16.8   0.0   2.4e-07    0.0005     220     321 ..     180     285 ..     162     300 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.045
    TIGR00846 167 aevqd.sklelsvgiaivllilYvvfLvfqlv 197
                  +e+++  + + ++  ai+  +l++v+L  q +
  MMETSP1174-20130828|23333_1  12 DELLSsREKSWALYSAILCGVLFIVYLTYQYM 43 
                  44444355666777788888888888877754 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2.4e-07
    TIGR00846 220 ept.vlsslsaailLvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkld...ialgvalGSalqiallvvplvvlvawilg 321
                  ept +  ++ a+  L + t  v + ++ lv+ ++ v  ++g+++ + +++ +p+v n +E +++  +a k  ++    +l+   G  +   +++  ++ ++ w  +
  MMETSP1174-20130828|23333_1 180 EPTgTNPMKEALQKLSLGTFLVLAFSDPLVDVINAVGTRTGIPNFYLAFLFAPMVTNGSELIASYRFATKKTVEsitCSLQQLYGAGTMNNTMTLGVFLILVWWKD 285
                  4442333566667788899999***********************************************9877522268888888888888888888888877655 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.1e-07    0.0013     179     269 ..     162     253 ..     155     294 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.1e-07
    TIGR00378 179 yevqeaeqtevmeeied.ePehslsvkvatvvllavtvvvavisellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmd 269
                  +  +++e  e+ +e +  eP  +  +k a+  l   t  v   s+ lv+ +++v  ++G+ + ++  +  p+v n +e +++   a k+ ++
  MMETSP1174-20130828|23333_1 162 FAAGVEEYAEIFNESDLdEPTGTNPMKEALQKLSLGTFLVLAFSDPLVDVINAVGTRTGIPNFYLAFLFAPMVTNGSELIASYRFATKKTVE 253
                  55677888888777543499999999999998887888888889**************************************9999997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1285.83
//
Query:       MMETSP1174-20130828|23335_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-44  148.5  15.5    2.9e-42  142.8  10.8    2.0  1  TIGR00861 MIP: MIP family channel proteins


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8  10.8     7e-46   2.9e-42       1     222 [.      85     344 ..      85     345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 142.8 bits;  conditional E-value: 7e-46
    TIGR00861   1 aeflgtlllvffgvgvvlvvnvakavsavgggtllevalafglavallvyavggiSGahlNPAvTlallvlr....kfplkkvvvYivaQliGailgaallylltkkal..........................egdlavaesaaaGalavfpk..lssvqalvvefiltaiLvlvilaltd.krealssgg...laplaiGllvvlivlslgpltgtamNpARslGpalvaalv.gfes........yfwvylvgPivGailgal 222
                  ae lgt ++v++g+g+v+++      +a     +++va+++g++val++y+++  SGahlNPA+Tla+l++r    +++  +++ Y++aQl+Gai+++al  +l+++++                           ++  ++++  +G   v+ +  +++++a+++e  +t +L +vi+alt+ k++al  g+     pl+iG +v +  ++ +p+t ++ NpAR++Gp+lvaa++ g+++         fw+y+ gP+vGa +ga 
  MMETSP1174-20130828|23335_1  85 AEALGTAMIVLVGCGCVCSTLS----GAYS--GIWQVAVVWGIGVALAIYTTADLSGAHLNPAITLAFLLVRpkahDMTRVRALQYMAAQLLGAIVAGALNLGLYSGTIqaferqksiergspasilsasafgeyFPNPGLNSEYLDG-DGVYNNddVTVFHAFLTEAWGTCVLAFVIFALTHaKNKALAVGKartGVPLMIGATVSVLLALYAPITQAGWNPARDFGPRLVAATIgGWGAvaipgpkfGFWIYIAGPFVGAPVGAY 344
                  89****************8643....4454..599**********************************9974444788999***********************9999998776666665555554444444443334444444444.33444489*************************9777776655444478**********************************998536888*******769************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1222.64
//
Query:       MMETSP1174-20130828|23338_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 404.39
//
Query:       MMETSP1174-20130828|23341_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 665.02
//
Query:       MMETSP1174-20130828|23348_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.1   0.1        0.5    7.1   0.0    2.0  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
  ------ inclusion threshold ------
      0.023   11.9   0.1      0.039   11.2   0.0    1.4  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00037      0.75      95     121 ..      19      45 ..       5      66 .. 0.78
   2 !    7.1   0.0   0.00024       0.5     221     261 ..      71     110 ..      66     129 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00037
    TIGR03056  95 sPdaviGhsaGaaialrlaldlpvrPr 121
                  + d+viG s Gaa a+ l  +   +P+
  MMETSP1174-20130828|23348_1  19 RFDVVIGFSQGAAAAAMLCAEIEPKPK 45 
                  4589***********999887776777 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00024
    TIGR03056 221 vPvlliageedkavppdvskeaatrlplatlrevpGlGhlv 261
                   P+l i+g+ d+ v p+ s+ + + +p  t+ e  G Gh++
  MMETSP1174-20130828|23348_1  71 FPTLHIIGQADEVVVPERSRALGELFPDPTIIEHVG-GHML 110
                  6999***************************99999.9986 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.51   1.1e+03      82      98 ..      22      38 ..      18      41 .. 0.77
   2 ?   11.2   0.0   1.9e-05     0.039     193     250 ..      70     124 ..      59     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.51
    TIGR02427 82 avcGlSlGGliaqaLaa 98
                 +v+G S G + a++L a
  MMETSP1174-20130828|23348_1 22 VVIGFSQGAAAAAMLCA 38
                 57899999888888876 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 1.9e-05
    TIGR02427 193 avPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnleqpeafaallrdfl 250
                  + Ptl i G+ D +  pe  r++ +l p+++  e   ++H+    +++ + + +r+fl
  MMETSP1174-20130828|23348_1  70 NFPTLHIIGQADEVVVPERSRALGELFPDPTIIEHV-GGHML--PSGAVVRKEVRAFL 124
                  67*****************************99988.88874..45667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 609.88
//
Query:       MMETSP1174-20130828|23350_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 645.28
//
Query:       MMETSP1174-20130828|23351_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|23352_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|23356_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.8  17.5      0.019   12.0   3.5    2.4  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.5   4.6e-06     0.019      29      68 ..     100     143 ..      86     147 .. 0.83
   2 ?   -0.6   2.5     0.032   1.3e+02     117     164 ..     153     195 ..     144     261 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.6e-06
    TIGR00599  29 ChvCkd..ffkaPv..ltsCsHtFCslCiRrcLseepkCPlCra 68 
                  C vC d   f + v  l  C H F + Ci r+L  +p CP Cr 
  MMETSP1174-20130828|23356_1 100 CVVCTDeiLFGQEViqLPNCVHHFHADCILRWLDIQPTCPSCRV 143
                  8888886545555512569***********************96 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.032
    TIGR00599 117 ssskkklieeeeakgvdeeseddlrsasssraaakkktadilqlssdt 164
                  + s  k + ee  ++     +dd+ s++ss ++  +k +d   + + +
  MMETSP1174-20130828|23356_1 153 NQSEAKEVREERGDE-----NDDRSSRRSSTTSHSEKETDAKLVPESP 195
                  444444444444444.....4444444555544444444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1217.23
//
Query:       MMETSP1174-20130828|23360_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1328.14
//
Query:       MMETSP1174-20130828|23362_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073    9.8   8.4      0.096    9.4   5.8    1.2  1  TIGR03742 PRTRC_F: PRTRC system protein F
        8.4    3.3  12.7        8.9    3.2   8.8    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR03742  PRTRC_F: PRTRC system protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.8   4.7e-05     0.096     191     277 ..      27     110 ..       3     116 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.7e-05
    TIGR03742 191 veqaleedaflpshehlkewaarkklkaagrvalvaakaksdpavravveaaleLhallkkrrgaradlapdqdaesigslaliawd 277
                  v+++ + +    + + l e aa +k+ a +   +v++ a+ + a+r+v +++++L+ ++ ++++a+++++ +  ae + ++a ++  
  MMETSP1174-20130828|23362_1  27 VTEEHAAALS-ACAKTLAEKAAASKRVAEKA--RVERVAAEEMAARKVEAEMAALKTHACREQSADKSIEEHTRAEELAAAAALSAT 110
                  3333332222.34555555666666666555..9*********************************************99999865 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   8.8    0.0044       8.9      71     179 ..      14     122 ..       2     128 .] 0.41

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0044
    TIGR01347  71 laeleessaaaeaasekske...ekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvk 179
                  l +l+e++ ++++ +e++++   + +++ a+ka+++k  aek + ++  a++ ++ +++++e ++   kt++ ++++++k+ e++++a++ aaa+a +a+e++   se R+ 
  MMETSP1174-20130828|23362_1  14 LQVLAEQALVEKTVTEEHAAalsACAKTLAEKAAASKRVAEK-ARVERVAAEEMAARKVEAEMAAL--KTHACREQSADKSIEEHTRAEELAAAAALSATEANLRASEYRIS 122
                  444444333333333333220002333344444444444443.33333333323333333333322..33444555555555555555555555555555444444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       519  (0.126524); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 544.99
//
Query:       MMETSP1174-20130828|23363_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.7    1.8   8.7        9.5    1.5   6.0    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   6.0    0.0023       9.5     830     904 ..      55     129 ..      43     142 .. 0.53

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0023
    TIGR00927 830 aeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgev 904
                   ee  +++G+ed +e   e eGee  d ++g ++a+ ++ev+ +++ +    ee  ev  ++ +     +edge 
  MMETSP1174-20130828|23363_1  55 FEEPFRVQGAEDPEELGREPEGEELRDREDGGAHAEGHAEVDRHDRPAGNVDEEVVEVAVADPDEVAADGEDGEG 129
                  555666778888888888888888888777777775444443332222223333334433333222222344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|23364_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.8   0.0      0.019   11.4   0.0    1.2  1  TIGR00604 rad3: DNA repair helicase (rad3)


Domain annotation for each model (and alignments):
>> TIGR00604  rad3: DNA repair helicase (rad3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.7e-06     0.019     198     239 ..      47      85 ..      14      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.7e-06
    TIGR00604 198 nvvvlpYqyLldpkirealsleLkk.sivifDEAHNldnviis 239
                   v + +Yq+++++ +  + +    k    i+DEAHN++n  ++
  MMETSP1174-20130828|23364_1  47 HVCITSYQLIVQDATSFRRK----KwYFLILDEAHNIKNFKSQ 85 
                  68899******998866654....33899*********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.64
# Mc/sec: 476.40
//
Query:       MMETSP1174-20130828|23367_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    3.8  16.2          4    3.6  11.3    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.3   0.00097         4      28     113 ..       8      92 ..       3     113 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00097
    TIGR03490  28 ssnskqpekkpeakpeenkPkkpkkpdnkeksensnnks.nseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadep 113
                  +++++q+e+  e + ++++ +++++ +   +++ + + s  s ++ e+   ++   +  ++++ ++++e +k++++  d+ ++a+e+
  MMETSP1174-20130828|23367_1   8 DEAAEQNEDVSERRSDDENEEQAQDDPGA-QNDEA-ETSpTSDDDVEQAVTKNGEHNDGEIGDGEDKPEGNKDDDNDRDSVDDAEED 92 
                  45556666666655555555555554433.33332.223133333333333334444456666666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 604.10
//
Query:       MMETSP1174-20130828|23368_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|23369_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|23380_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 155.99
//
Query:       MMETSP1174-20130828|23375_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1327.89
//
Query:       MMETSP1174-20130828|23383_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 556.93
//
Query:       MMETSP1174-20130828|23382_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   24.3   0.0    1.8e-06   23.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0069   13.7   0.0      0.014   12.7   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.029   11.4   0.0      0.046   10.8   0.0    1.2  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-09   1.8e-06      22     194 ..      69     247 ..      50     254 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.3e-09
    TIGR03903  22 vaRFrReialCarLs...hPnivaL..lD..sGeaedgllFavFeyveGrtlrevLaadGa...LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasv 194
                   +R  Re+    +L    h n+v+L  +   +G+      + vF+++e   l  v++adG    L   +   +  q+L al   h+a v hR+LkP ni++     + h ++   G    +++ ++         t+++    Y +Pe L g +   +  D++a G iv e    +   +G+s+
  MMETSP1174-20130828|23382_1  69 AQRTYREVMYLTELAssgHDNLVRLssIYcgQGNRSK-DFYLVFDFMET-DLFLVIQADGRrpfLKDMHKKYITFQILKALKFLHSADVCHRNLKPSNILMNS---DCHIQLCGMGSCRSVSENRAEIPPLPPVLTDYVSFRWYRSPEVLLGSTHySTGVDIWALGCIVAELFLHEALFKGKST 247
                  4455555555444433338999998553311444444.46789***996.57889*****722245566667899************************9854...456666655555555555554444446789999999999999999987615567999999999999888888888876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     1e-05     0.014      85     146 ..     132     189 ..     109     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
    TIGR03724  85 kdlleekelellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkkskevedka 146
                  kd+ ++    ++ ++ +++  lH+a+++h  l +sNi++ ++++ +   G+g+ ++  e++a
  MMETSP1174-20130828|23382_1 132 KDMHKK---YITFQILKALKFLHSADVCHRNLKPSNILM-NSDCHIQLCGMGSCRSVSENRA 189
                  444444...56678889999*******************.6667776678888777766665 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05     0.046     211     286 ..      78     153 ..      62     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.4e-05
    TIGR01579 211 LlekilkieglkriRlsSlepeevd..eelleliasekklcphlHlslQs.gsdkvLkrmrRkytrddilklveklrsv 286
                   l+++ +  +++ +RlsS++  + +  +++  +++    ++  l l++Q+ g    Lk m++ky + +ilk+++ l+s 
  MMETSP1174-20130828|23382_1  78 YLTELASSGHDNLVRLSSIYCGQGNrsKDFYLVFD---FMETDLFLVIQAdGRRPFLKDMHKKYITFQILKALKFLHSA 153
                  4788889999**********988762267888888...57799******758888******************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1306.69
//
Query:       MMETSP1174-20130828|23389_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.7   4.3       0.16    9.7   0.4    2.5  2  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0003       1.2       5      27 ..      79     100 ..      76     101 .. 0.77
   2 !    9.7   0.4     4e-05      0.16       3      22 ..     103     122 ..     102     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0003
    TIGR01376   5 ilFsnNsakgsGGAIyatgkisi 27 
                  ++F    a  sGG Iya+ +  i
  MMETSP1174-20130828|23389_1  79 LTFMHGRASSSGGCIYAD-DTAI 100
                  5666668999*******9.6555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4e-05
    TIGR01376   3 gtilFsnNsakgsGGAIyat 22 
                  ++i+F n sa+++GG+++ +
  MMETSP1174-20130828|23389_1 103 QSITFMNCSAATNGGGLSVS 122
                  68*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 321.57
//
Query:       MMETSP1174-20130828|23390_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-12   43.7   0.2    6.2e-12   43.2   0.2    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   1.5e-15   6.2e-12     324     376 ..     131     181 ..      78     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.5e-15
    TIGR00601 324 aglgqieqiqvtpeekeaieRLkalGFdrdlviqaylACdknEelAanyLleq 376
                  +  g +++i   +ee+++i+RL ++GF+r  vi+a++ACd+n+   a +Ll q
  MMETSP1174-20130828|23390_1 131 D--GVGDEIVFSNEEENSISRLAEMGFQRADVIEAFVACDRNDHRTAELLLTQ 181
                  3..44569******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 739.94
//
Query:       MMETSP1174-20130828|23392_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1570.33
//
Query:       MMETSP1174-20130828|23400_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|23402_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1174-20130828|23403_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1174-20130828|23404_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 664.07
//
Query:       MMETSP1174-20130828|23406_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 295.03
//
Query:       MMETSP1174-20130828|23407_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.55
# Mc/sec: 887.93
//
Query:       MMETSP1174-20130828|23408_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 471.39
//
Query:       MMETSP1174-20130828|23411_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 757.72
//
Query:       MMETSP1174-20130828|23413_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 468.79
//
Query:       MMETSP1174-20130828|23415_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1174-20130828|23412_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1971.59
//
Query:       MMETSP1174-20130828|23419_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|23421_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.45
# Mc/sec: 962.05
//
Query:       MMETSP1174-20130828|23422_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.3   0.0      0.053   10.8   0.0    1.1  1  TIGR00549 mevalon_kin: mevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.3e-05     0.053     116     165 ..     121     170 ..     106     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.3e-05
    TIGR00549 116 elskeelaklaneaEkivhGkpSgiDtavvtyggvllfekdegeeklles 165
                  + +++e ++++ e+E  v G+ S iD  vv +  ++ + ++ + e+++  
  MMETSP1174-20130828|23422_1 121 NKQDAEQIRVVTEVELDVDGEGSIIDEEVVGVTTPVALGSGAQVEEFTYR 170
                  4566788899***************************9999886666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.55
# Mc/sec: 727.14
//
Query:       MMETSP1174-20130828|23428_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1521.76
//
Query:       MMETSP1174-20130828|23430_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 405.07
//
Query:       MMETSP1174-20130828|23429_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 1583.87
//
Query:       MMETSP1174-20130828|23433_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 1917.97
//
Query:       MMETSP1174-20130828|23435_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-05   20.2   0.0      9e-05   20.0   0.0    1.0  1  TIGR01262 maiA: maleylacetoacetate isomerase
  ------ inclusion threshold ------
      0.018   12.6   0.0      0.022   12.3   0.0    1.2  1  TIGR00862 O-ClC: intracellular chloride channel protein


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.4e-08     9e-05       8      98 ..      12     107 ..       5     111 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4.4e-08
    TIGR01262   8 SsasyRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkide..gevltqSlAiieyLeetyp.....epaLlpkdpakrarvralal 98 
                   ++ y  R+ + Lk++d  +   +++  G+ k + + ++NP+++vP++++    +ev+ +S    e+L +        ++ L+p+d+  rar+r l +
  MMETSP1174-20130828|23435_1  12 NTCPYAARTFIVLKELDIAFSMTEVT--GQPKPDWYLRINPKGKVPAIRVPAldNEVVYESAICCEFLCDYSSgslnkHTELMPSDALGRARMRLLNE 107
                  57889999999999999988887776..5899999*************97644489******999*997654311111455***********998865 PP

>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.022      18      63 ..      13      58 ..       8      94 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
    TIGR00862 18 ncpfsqrlfmilwlkgvvfnvttvdlkrkpeelknlapgtkppflv 63
                  cp++ r f++l    + f++t v  + kp+    + p +k p + 
  MMETSP1174-20130828|23435_1 13 TCPYAARTFIVLKELDIAFSMTEVTGQPKPDWYLRINPKGKVPAIR 58
                 5*******************************99****99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|23436_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 178.82
//
Query:       MMETSP1174-20130828|23437_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   31.2   0.0    1.5e-08   30.8   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.5e-08   30.8   0.1    7.9e-08   30.0   0.0    1.4  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0014   16.2   0.1     0.0034   15.0   0.0    1.7  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0038   13.7   0.0     0.0057   13.1   0.0    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.012   14.0   0.3       0.12   10.8   0.0    2.6  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.9e-11   1.5e-08     464     552 ..     276     364 ..     268     367 .] 0.94

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.9e-11
    TIGR02917 464 naslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeea 552
                  +a + n  g +++ +++l++A+e f++A  + p ++ A ++LA++ + +  +++A++ f +v++ +p n +  l L +++ +kg+ ++ 
  MMETSP1174-20130828|23437_1 276 SADMLNREGNALVESNQLSQAEEVFKEAIRLHPSYVLAYHSLAEVFMRQRMAQEAQDAFGEVIRLAPDNGHGYLGLGKVNFAKGEVDTT 364
                  57788999***********************************************************************9999988765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   9.6e-11   7.9e-08      42     100 ..     288     346 ..     271     360 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 9.6e-11
    TIGR02521  42 leqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                   e+++l +A e  ++A+ l p++  a+++lA ++++++  ++A+++f + ++l+p+ng+
  MMETSP1174-20130828|23437_1 288 VESNQLSQAEEVFKEAIRLHPSYVLAYHSLAEVFMRQRMAQEAQDAFGEVIRLAPDNGH 346
                  6899****************************************************986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   1.3e+03     111     128 ..     119     137 ..     102     140 .. 0.57
   2 !   15.0   0.0   4.1e-06    0.0034      27     104 ..     286     363 ..     276     367 .] 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.6
    TIGR02552 111 laieiae.ekeeyselker 128
                   ++++ + ++++y +l++ 
  MMETSP1174-20130828|23437_1 119 ETVQVVQyDNDQYYNLHTD 137
                  3333333366666666555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 4.1e-06
    TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekee 104
                  +l+++ ++++Ae++F+  + l p       +La++++++   +eA++a++    l +d+   ++ ++++ +a+ge   
  MMETSP1174-20130828|23437_1 286 ALVESNQLSQAEEVFKEAIRLHPSYVLAYHSLAEVFMRQRMAQEAQDAFGEVIRLAPDNGHGYLGLGKVNFAKGEVDT 363
                  567777888888888888888888777788888888888888888888888888888888888888888888887665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     7e-06    0.0057     343     417 ..     289     363 ..     275     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7e-06
    TIGR00990 343 lkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefae 417
                    ++  +a + ++ +i l+P+   +y   a + + +  +++a++ f + +++ +++   y   ++++f kge + 
  MMETSP1174-20130828|23437_1 289 ESNQLSQAEEVFKEAIRLHPSYVLAYHSLAEVFMRQRMAQEAQDAFGEVIRLAPDNGHGYLGLGKVNFAKGEVDT 363
                  456667788888888888888888888888888888888888888888888888888888888888888888765 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.63   5.1e+02      85     116 ..      63      94 ..      56      97 .. 0.76
   2 ?   10.8   0.0   0.00015      0.12       8      71 ..     283     343 ..     276     366 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.63
    TIGR02795  85 slqelgqkekAkktlqevikrYPkssaaklak 116
                  ++++     +  +t+ +v  +Y +s++a+l  
  MMETSP1174-20130828|23437_1  63 IMKAASTRLQPSQTFAHVKLKYRNSQSARLDD 94 
                  56666666677889999999999999998765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00015
    TIGR02795   8 aallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypk 71 
                  +++ ++++ + ++Ae+ Fk+ ++ +P+  la   +  l+e++++++  ++A++af ev++  p+
  MMETSP1174-20130828|23437_1 283 EGNALVESNQLSQAEEVFKEAIRLHPSYVLA---YHSLAEVFMRQRMAQEAQDAFGEVIRLAPD 343
                  5566777788888888888888888887774...556888888888888888888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1242.05
//
Query:       MMETSP1174-20130828|23439_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1082.31
//
Query:       MMETSP1174-20130828|23447_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-06   22.4   0.0      7e-06   22.4   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    0.00021   17.5   0.0    0.00021   17.4   0.0    1.0  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    0.00045   16.8   0.3    0.00053   16.5   0.2    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    0.00047   17.0   0.1    0.00051   16.9   0.1    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      0.002   13.4   0.0      0.002   13.4   0.0    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      0.002   14.5   0.1     0.0029   14.0   0.0    1.4  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
     0.0024   14.3   0.0     0.0024   14.3   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      0.005   14.2   0.1     0.0076   13.6   0.1    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0058   13.1   0.5       0.02   11.3   0.0    1.5  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
     0.0076   13.1   0.0     0.0093   12.8   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
     0.0083   13.4   0.0      0.012   12.9   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
     0.0093   13.5   0.0      0.013   13.0   0.0    1.2  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
  ------ inclusion threshold ------
      0.014   11.7   0.0      0.015   11.6   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      0.016   12.5   0.0      0.031   11.6   0.0    1.5  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      0.017   11.2   0.0      0.019   11.0   0.0    1.1  1  TIGR00958 3a01208: antigen peptide transporter 2
      0.025   11.8   0.1      0.044   11.0   0.0    1.4  2  TIGR01978 sufC: FeS assembly ATPase SufC
      0.027   11.7   0.0      0.042   11.1   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group


Domain annotation for each model (and alignments):
>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.9e-08     7e-06     458     508 ..      44      94 .]       9      94 .] 0.82

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.9e-08
    TIGR03375 458 sreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKst 508
                  +   ++G+ie  + ++  p+  ++ L++  l++  G + ++iGr+G GKst
  MMETSP1174-20130828|23447_1  44 RMGAFNGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  445689********************************************9 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.7e-07   0.00021     464     520 ..      38      94 .]       7      94 .] 0.75

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 8.7e-07
    TIGR03796 464 kaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkst 520
                  +  +++++   +G++e ++ t       +pl+ed  l+l  G+r  l+G  G Gkst
  MMETSP1174-20130828|23447_1  38 AVLARARMGAFNGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  2223333388999***99999999999*****************************9 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   2.2e-06   0.00053     304     376 ..      20      94 .]       2      94 .] 0.65

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.2e-06
    TIGR02868 304 aeRie.evldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKst 376
                  aeR + e++ +  ++  +++ a + +++ +  +e+++ +   pg+ +  l++  l+l  G+r  ++G+ G+GKst
  MMETSP1174-20130828|23447_1  20 AERDAaEIETELENARVGAVLARARMGAFNGAIEAAKFTLPNPGGGQpLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  333331222222333444444444444456677777777777877666**************************9 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.1e-06   0.00051     286     363 ..      16      94 .]       5      94 .] 0.72

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-06
    TIGR02857 286 akaegvaaaealvevldaeeqpeaekapltaaass.slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKst 363
                  a+++++  a+++ + l+ ++++ a  a ++  a+  ++e+++ ++  +g   p l++  lt+  g++++l+G  G GKst
  MMETSP1174-20130828|23447_1  16 AAQKAERDAAEIETELE-NARVGAVLARARMGAFNgAIEAAKFTLPNPGGGqPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  33444444444444444.4444444444444444379**********98888***************************9 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.3e-06     0.002    1215    1260 ..      49      94 .]       8      94 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.3e-06
    TIGR01271 1215 ggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkst 1260
                   +g ++  ++t     +g+ +l+d ++++  g+r gl+gr g gkst
  MMETSP1174-20130828|23447_1   49 NGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94  
                   4666666777777789*****************************8 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05    0.0029     306     359 ..      41      94 .]       5      94 .] 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
    TIGR01842 306 ealklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkss 359
                  ++ ++ + +g +e+ + +l +p++ ++ l++  ++l  G   ++iG  g Gks+
  MMETSP1174-20130828|23447_1  41 ARARMGAFNGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  45667788999999***************************************8 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.8e-06    0.0024     324     374 ..      44      94 .]       2      94 .] 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.8e-06
    TIGR02203 324 alervrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkst 374
                   +   +G +e  + t   pg +++ l++  l++  G++  l+Gr G Gkst
  MMETSP1174-20130828|23447_1  44 RMGAFNGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  34446799******************************************8 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.1e-05    0.0076       7      33 ..      68      94 .]      63      94 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.1e-05
    TIGR01166  7 vlkglnlavergevlallGanGaGkst 33
                  l++  l++ rg++ +l+G+nG Gkst
  MMETSP1174-20130828|23447_1 68 LLEDAALTLVRGRRYGLIGRNGMGKST 94
                 6899999*******************8 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   8.4e-05      0.02      18      46 ..      66      94 .]      54      94 .] 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.4e-05
    TIGR03719 18 keilkdislsffpgakiGvlGlnGaGkst 46
                 + +l+d  l+   g + G++G nG Gkst
  MMETSP1174-20130828|23447_1 66 QPLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 55677777777777777888888877776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.9e-05    0.0093      15      45 ..      64      94 .]      49      94 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-05
    TIGR01288 15 gdkvvvndlsftiaagecfgllgpngagkst 45
                 g++ +++d ++t+ +g  +gl+g ng gkst
  MMETSP1174-20130828|23447_1 64 GGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 666788999*********************8 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   5.1e-05     0.012      24      52 ..      66      94 .]      55      94 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.1e-05
    TIGR02769 24 kavldnvslsleeGetvallGrsGaGkst 52
                 +++l++  l+l +G   +l+Gr G Gkst
  MMETSP1174-20130828|23447_1 66 QPLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 7899************************9 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.3e-05     0.013      13      41 ..      66      94 .]      59      94 .] 0.92

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.3e-05
    TIGR03740 13 qavvnnvslkvkknsvygllGpnGaGkst 41
                 q ++++ +l++ + + ygl+G nG Gkst
  MMETSP1174-20130828|23447_1 66 QPLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 67889999********************8 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.1e-05     0.015     441     494 ..      41      94 .]      21      94 .] 0.93

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.1e-05
    TIGR03797 441 ekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKSt 494
                  ++++ g  +Gaie  + t      g+  L+d +l+   G   +++G  G GKSt
  MMETSP1174-20130828|23447_1  41 ARARMGAFNGAIEAAKFTLPNPGGGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  56788999*********************************************9 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   5.8e+02      18      38 ..      26      46 ..      18      48 .. 0.71
   2 ?   11.6   0.0   0.00013     0.031      14      41 ..      67      94 .]      59      94 .] 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.4
    TIGR03410 18 dvslevekgevvavlGrngvG 38
                 +++ e+e+ +v avl r  +G
  MMETSP1174-20130828|23447_1 26 EIETELENARVGAVLARARMG 46
                 456667777777777777666 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00013
    TIGR03410 14 evlrdvslevekgevvavlGrngvGktt 41
                  +l+d  l++ +g+   ++Grng+Gk+t
  MMETSP1174-20130828|23447_1 67 PLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 5799999*******************98 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.9e-05     0.019     485     522 ..      56      94 .]      42      94 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.9e-05
    TIGR00958 485 sFsYPsrp.dkpvlkdLtftlepGevvalVGPsGsGKSt 522
                  +F+ P+    +p+l+d ++tl  G+   l+G +G GKSt
  MMETSP1174-20130828|23447_1  56 KFTLPNPGgGQPLLEDAALTLVRGRRYGLIGRNGMGKST 94 
                  678887542689**************************8 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.4   5.7e+02      67      76 ..      25      35 ..       8      51 .. 0.51
   2 ?   11.0   0.0   0.00018     0.044      13      41 ..      66      94 .]      59      94 .] 0.94

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.4
    TIGR01978 67 leleve.erar 76
                 +e+e+e e ar
  MMETSP1174-20130828|23447_1 25 AEIETElENAR 35
                 33333223333 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00018
    TIGR01978 13 keiLkglnlevkkGevhaimGpnGsGkst 41
                 +++L++  l++ +G  + ++G+nG Gkst
  MMETSP1174-20130828|23447_1 66 QPLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 7899************************9 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017     0.042      12      39 ..      67      94 .]      61      94 .] 0.93

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
    TIGR03608 12 eilkklslkiekGelvaivGesGsGKst 39
                  +l++  l++ +G+ + ++G+ G GKst
  MMETSP1174-20130828|23447_1 67 PLLEDAALTLVRGRRYGLIGRNGMGKST 94
                 5799***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      215  (0.0524135); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 295.40
//
Query:       MMETSP1174-20130828|23445_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1231.90
//
Query:       MMETSP1174-20130828|23450_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.26s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 317.28
//
Query:       MMETSP1174-20130828|23453_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.43
# Mc/sec: 380.62
//
Query:       MMETSP1174-20130828|23452_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.44
# Mc/sec: 818.93
//
Query:       MMETSP1174-20130828|23448_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|23458_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.1   0.0      0.021   11.9   0.0    1.1  1  TIGR01227 hutG: formimidoylglutamase


Domain annotation for each model (and alignments):
>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.1e-06     0.021     142     216 ..      48     118 ..      30     125 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.1e-06
    TIGR01227 142 GvinfDAHfDlRavederptsGTpfrqlldeeqaedfhlivlGirrfsntqalfdyakkkgvryvtddalaelsl 216
                   ++ +D H D+   e+ +   GT    +l+    ++  l  + i   +  + l +y+k  gv++v ++a++ ++l
  MMETSP1174-20130828|23458_1  48 RIVLLDEHIDCYDDEQPEVREGTKIAEILHHRGFDG--L--VCILSGGSCEDLSEYLKTPGVDMVASKAMSMQNL 118
                  4799***********99999****999999999988..4..457889999*******************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|23465_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-16   58.1   0.0    3.1e-16   57.8   0.0    1.1  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
    1.8e-07   29.9   0.0    2.4e-07   29.5   0.0    1.1  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC


Domain annotation for each model (and alignments):
>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.5e-19   3.1e-16       1      86 [.      34     124 ..      34     130 .. 0.94

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.5e-19
    TIGR01685   1 lpkvivfDlDgTlWdhynisllkg..PfKpvksensiiidkeGaeltlikevrdvLqslkd....agvilaiasrndvpevareiLkifkik 86 
                  lpk +vfDlDg lW + ++ l++g  Pf +    +  + d +G+++ + + v+d+L++l++    +++++ +as +d p++a+e ++ f+i 
  MMETSP1174-20130828|23465_1  34 LPKAVVFDLDGCLWYPDMYMLWGGgaPFTKAPGGE-CLLDVRGQQVAMLGAVPDILRELETdskwNDTVVCVASCTDEPSWAQECMRKFDIG 124
                  6899******************9999**9988666.9***********************999999***********************996 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.2e-10   2.4e-07       1      70 [.      36     121 ..      36     124 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.2e-10
    TIGR01681   1 kvivfDlDnTLwtdeed...........vvkedp....iedieltevt.ikeirdvLqelkkn....GvllalaSknddeevakellkik 70 
                  k +vfDlD+ Lw + ++                p    + d+++++v   ++++d+L el++      +++++aS +d++++a+e  + +
  MMETSP1174-20130828|23465_1  36 KAVVFDLDGCLWYPDMYmlwgggapftkA----PggecLLDVRGQQVAmLGAVPDILRELETDskwnDTVVCVASCTDEPSWAQECMRKF 121
                  689***********999*******65441....334668*********************99888889****************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1174-20130828|23464_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 669.84
//
Query:       MMETSP1174-20130828|23467_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|23469_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 453.91
//
Query:       MMETSP1174-20130828|23471_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 227.31
//
Query:       MMETSP1174-20130828|23472_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 193.15
//
Query:       MMETSP1174-20130828|23477_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.43
# Mc/sec: 187.24
//
Query:       MMETSP1174-20130828|23478_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 443.11
//
Query:       MMETSP1174-20130828|23485_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   33.3   0.0    3.3e-09   33.3   0.0    1.0  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    7.7e-09   32.2   0.0    8.1e-09   32.1   0.0    1.0  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    5.6e-08   29.4   0.0    5.6e-08   29.4   0.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB


Domain annotation for each model (and alignments):
>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.4e-12   3.3e-09     520     573 ..       1      53 [.       1      74 [. 0.89

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 2.4e-12
    TIGR02639 520 mseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDil 573
                  m  y+ + ++s l+G+  Gy G    G Lt+++r +P av++l+e ekah+  l
  MMETSP1174-20130828|23485_1   1 MNQYQTRESISNLLGADKGYEGQC-TGALTSTLRVSPDAVIVLEEFEKAHSTFL 53 
                  889*******************65.6789*********************9765 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   5.9e-12   8.1e-09     632     692 ..       1      61 [.       1      74 [. 0.85

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 5.9e-12
    TIGR03345 632 msefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvle.lFyqvF 692
                  m  +q + ++s+L+G+  GY G    G Lt  +R +P +v++L+e ekAh+  l+  F + F
  MMETSP1174-20130828|23485_1   1 MNQYQTRESISNLLGADKGYEGQCT-GALTSTLRVSPDAVIVLEEFEKAHSTFLDsCFLNAF 61 
                  889*******************986.68***********************98773566777 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.1e-11   5.6e-08     631     682 ..       1      51 [.       1      70 [. 0.92

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 4.1e-11
    TIGR03346 631 mseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpd 682
                  m +y+ + s++ l+Ga  Gy G    G+lt ++r  p +v++l+e ekah+ 
  MMETSP1174-20130828|23485_1   1 MNQYQTRESISNLLGADKGYEGQ-CTGALTSTLRVSPDAVIVLEEFEKAHST 51 
                  889*******************6.5689**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 271.11
//
Query:       MMETSP1174-20130828|23490_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 819.24
//
Query:       MMETSP1174-20130828|23491_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-24   83.3   0.0    4.3e-24   83.2   0.0    1.0  1  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
      2e-09   35.2   0.0    2.6e-09   34.9   0.0    1.1  1  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    1.5e-05   21.8   0.0    2.1e-05   21.4   0.0    1.2  1  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   3.2e-27   4.3e-24     103     251 ..       1     149 [.       1     150 [. 0.93

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 3.2e-27
    TIGR02067 103 kgkpvlGvisqPalgerfvaakgegallnggerelrvsevaklsdAvlvttspkaledeeer.eafeklrrkarltryggd.cyayalvAsGrvdlvveaelspyDiaalipiieeAggvitdwkGkeaeeggeavaaanaalhdevlell 251
                  kg++v++vi+ P  +e+f+a++g+g++lng   +++v e+++l dAv++++sp   e+ +     +++l  k+r  r+ g+ ++  a +A+Gr     e +ls++Diaa ++ii+eAgg +td++G +++  ++ ++a+n ++hde+l +l
  MMETSP1174-20130828|23491_1   1 KGRVVVSVIYDPHRDELFTATEGGGSFLNG--DPITVGEQSELGDAVVAMGSPPGKESMKMSlIGVQALMPKVRTIRMIGSaAIMLAWIANGRLTAYWEYDLSSWDIAAGALIINEAGGNFTDLAGDPFTLRTRKIVASNGRIHDELLTVL 149
                  5899*************************8..7*******************97776665554899***********98872578899******************************************999999************988 PP

>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-12   2.6e-09     108     238 ..       3     133 ..       1     142 [. 0.74

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 1.9e-12
    TIGR01331 108 kPvlGvvyaPvlgvlyfaeagkaakkevddqalkkkikvreadsealavvisrshaeekvkelle.......elgaelvvsvgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildldgkplaynkre 238
                  + v+ v+y P  ++l+ a++g +   + d +++ ++ +       ++ v++++   +e +k  l        +   + ++ +++++ ++ +A+g    Y  +   s WD aAg  +++eaGg+++dl g+p++   r+
  MMETSP1174-20130828|23491_1   3 RVVVSVIYDPHRDELFTATEGGGSFLNGDPITVGEQSELG-----DAVVAMGSPPGKESMKMSLIgvqalmpKV-RTIRMIGSAAIMLAWIANGRLTAYWEYDL-SSWDIAAGALIINEAGGNFTDLAGDPFTLRTRK 133
                  56899**********************8886555554444.....33444444444444444433233111043.3456678999***************9976.68*************************998876 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-08   2.1e-05     291     329 ..      98     136 ..      74     152 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.5e-08
    TIGR01330 291 ykekiWDhaaGaviveeaGGvvtDaagkpLDfskGrtLe 329
                  y    WD aaGa+i++eaGG  tD ag p+     + ++
  MMETSP1174-20130828|23491_1  98 YDLSSWDIAAGALIINEAGGNFTDLAGDPFTLRTRKIVA 136
                  66678**********************998654444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 757.72
//
Query:       MMETSP1174-20130828|23493_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|23487_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1951.14
//
Query:       MMETSP1174-20130828|23492_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 762.13
//
Query:       MMETSP1174-20130828|23489_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-50  167.5  17.0    1.1e-49  167.2  11.8    1.0  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    5.7e-29   99.3  14.1    7.3e-29   98.9   9.8    1.0  1  TIGR00712 glpT: glycerol-3-phosphate transporter
    5.1e-28   95.9  21.4    6.9e-28   95.5  14.8    1.2  1  TIGR00893 2A0114: D-galactonate transporter
    1.8e-22   77.6  20.4    1.8e-22   77.6  14.1    2.1  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    3.8e-10   37.9  17.5    3.8e-10   37.9  12.1    2.7  2  TIGR00880 2_A_01_02: multidrug resistance protein
    3.8e-08   31.0   4.4    3.8e-08   31.0   3.0    1.9  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    9.8e-07   26.0  17.9    1.9e-06   25.0  12.4    1.4  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.5e-05   22.1  18.1    2.2e-05   21.5  12.6    1.3  1  TIGR00886 2A0108: nitrite transporter
  ------ inclusion threshold ------
      0.014   12.0  17.5      0.035   10.7   4.9    2.3  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
      0.073    9.3   0.0       0.13    8.5   0.0    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
        3.3    4.2  30.7     0.0041   13.8   8.7    3.1  3  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2  11.8   3.1e-52   1.1e-49       2     379 .]      94     478 ..      93     478 .. 0.89

  Alignments for each domain:
  == domain 1    score: 167.2 bits;  conditional E-value: 3.1e-52
    TIGR00881   2 igylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkke....illqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaasel......apkkaiGtaaglvglfaylggilaglplgyladlfgwagaf 379
                  + y+a+y+ Rk ++++ p l +e g+s+  l ++ +++ + Y++++f++g ++     r++l ++ +l+++ +++l++s+s  ++ +l    G+f +   p+    +   f+ s r+tvv++w +s+  gg+l+  +++l++a+   w+ vf++ g++ + ++  l l+l  +  s+  +k+e+ +  + ++++++++ ++++++     ++ +v++ + +  ++++++++ + r+++  W+p+Y +   g+ + ka ++ ++f  +g+ G ++aG l Dkl+kgr + + + +  l  +s l     v   +lv +++++v+Gflv Gp  ++g aas+        p+  + + +glv+ +a+lg i+ ++ ++ l+d+fgwag f
  MMETSP1174-20130828|23489_1  94 VAYIAIYFARKPMSVVKPVLAQE-GFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAW-RGWRHVFLMCGLVVMAFAAPLGLILPAKDISQEEKKVENTQTGQ-QQQQQQQQGGMQQQKaerpVTFSEVVRLPGVLSLCTSYMLIKMARYCLMFWLPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLPYSVLGCLSCLAWSFCVGRGDLVNVVCMVVVGFLVAGPDGILGGAASKNlceylnKPPSYAPAISGLVNGVASLGVIAMSACTSNLLDRFGWAGLF 478
                  78*********************.***************************************************************************************************************977777776.579999*****998888877666777777777777777777766.3334444445544441122689*******************************************************************************9998876666665555577778**********************9999742222335888899999****************************987 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   9.8     2e-31   7.3e-29      30     431 ..      88     493 ..      73     502 .. 0.84

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 2e-31
    TIGR00712  30 vflgiflgyaayylvrknfalalpylveqgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllpwatssiaimfvllflngwfqgmgwppcgrtmvhwfsksergtivsiwnvahnigggilaalvllgialfvvwkaalylpaiiaiivallvvllvrdtpqscglpsieeyrndypddynek...aekeltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagipgtllcgwvsdkvfkgkrgatgvlfmilvtiavvvywlnpagnplvdlillivigfliygpvmliglha.lelap..kkaagtaagltglfgylg..gsvaasaivgyavdrfgwdggfl...vliggsilavlll 431
                  +f+  ++ y a y+ rk +++  p l ++gfs+  l +v +++  +y l +f++g  ++    r +l   +ll+++ ++ l++    + s   + vl    g+f     p     +   f  s r t+v +w+++++ gg + + +  l +a+   w++++ + +++ + +a ++ l++     s     +e+ +    ++ +++   ++++ + + + ++ v++   +  ++ + +++ + ry ++ w p+y+    ++   ++     +++  g+ g +  g ++dk+ kg+  +t + + +l  ++ +++ +      lv++++++v+gfl+ gp  ++g  a  +l+   +k    a  ++gl   +   g +a sa      drfgw g f+   v++gg+  avl l
  MMETSP1174-20130828|23489_1  88 LFALTYVAYIAIYFARKPMSVVKPVLAQEGFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSM----SNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAW-RGWRHVFLMCGLVVMAFAAPLGLILPAKDISQEEKKVENTQTGQQQQQQQQqggMQQQKAERPVTFSEVVRLPGVLSLCTSYMLIKMARYCLMFWLPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLPYSVLGCLSCLAWSFCVGRGDLVNVVCMVVVGFLVAGPDGILGGAAsKNLCEylNKPPSYAPAISGLVNGVAslGVIAMSACTSNLLDRFGWAGLFMalgVMMGGA--AVLSL 493
                  6888899*******************************************************************987654443....234445567888899999999999999999***********************9999999999997.68******************99999888888888999998887766665552345677788889999999998899999999*****************9998888888887777889***************************************9988888889*****************987776552456532257777788888887655434788899****************9444444443..33333 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5  14.8   1.9e-30   6.9e-28       3     388 ..      96     485 ..      94     497 .. 0.79

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 1.9e-30
    TIGR00893   3 tvinyldratlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqa...gkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl.aailwavisd...vl..skeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaala 388
                  ++  y  r  +S+  + l ++ g+s+  + +v ++  + y+l+q+++g + + + ++ +l+ a +l g+ t+  ++  ++ ++ vl    G + a + P   + ++  FP + rat+v+++   q+ g+i+++ +++++l+ ++W++vF+++G++ +  +  +  +++ +++  + +k+ e+  + ++ + +q+    ++++  +  ++ e+++ + v+ l  +++l++++ y ++ w p+y ++  g+ + +ag +as   + g++g+v+ g l d l+k +  ++l +    ++g +++l+  ++    + + ++++v+++f+ +g  ++++ a + +   +l  ++  a +  Gl+n ++ l+ i++ + +  + +  G +ag ++ +++++
  MMETSP1174-20130828|23489_1  96 YIAIYFARKPMSVVKPVLAQE-GFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRGWRHVFLMCGLVVMAFAAPLGLILP-AKDISQEEKKVENTQTGQQQQQQQQqggMQQQKAERPVTFSEVVRLPGVLSLCTSYMLIKMARYCLMFWLPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGR--MMLTTLPYSVLGCLSCLAWSFCVGRGDLVNVVCMVVVGFLVAGPdGILGGAASKNlceYLnkPPSYAPAISGLVNGVASLGVIAMSACTSNLLDRFG-WAGLFMALGVMM 485
                  556688899999999999999.9****************************************************999***************************************************************************975544443333333.3332222222222222222222222464444556677899***********************************************************************987..666666555666666666666654556666666666666666663444333333311144223345566779*************************.999999998765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6  14.1   4.8e-25   1.8e-22      36     363 ..     106     428 ..      77     436 .. 0.80
   2 ?    1.9   1.3     0.048        18     148     179 ..     451     483 ..     432     507 .. 0.74

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 4.8e-25
    TIGR00895  36 lgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgk.lakatllLwllyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvlalllllaavf...avlvvs.tlssptll.llllvilGlfvngaqsgllalm 363
                  ++++ p l++e g ++ +l ++ ++ L+  +lG +++g +a  +  +++l  + ll +v t+++ ++++   ++vl    g     + p l+ ++s+  p  +ratvvgl +   + G++++  +aal+++  gWr +fl+ g++ +  ++ l  +Lp     + ekk e+   + +  +++ q+++q  ++++       ++ + + f++  +    l L  +y+l  ++ Y l+ WlP + ++  g+ + ka ++   + +Ggvlg + +g l d+l ++ ++l +l  +v+   ++l+ s  +   +l+ ++ +v++G++v+g+ + l +++
  MMETSP1174-20130828|23489_1 106 MSVVKPVLAQE-GFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRGWRHVFLMCGLVVMAFAAPLGLILPAKDISQEEKKVEN---TQTGQQQQ-QQQQQGGMQQQ-------KAERPVTFSEVvRLPGVLSLCTSYMLIKMARYCLMFWLPtYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLPYSVLgclSCLAWSfCVGRGDLVnVVCMVVVGFLVAGPDGILGGAA 428
                  77888888887.899999**************************************************9999988776666667777888999*****************************************************************8876666663333...22221111.22222233333.......33334446655145677788999999999**********99999**********************************99988888876666511133333334555554425677899******998887766 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.048
    TIGR00895 148 vGy.aiGaavggllaallipafgWrslflvggi 179
                   G+  +G++  ++ ++ l+  fgW  lf+  g+
  MMETSP1174-20130828|23489_1 451 NGVaSLGVIAMSACTSNLLDRFGWAGLFMALGV 483
                  444258999999999999999***999985543 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9  12.1     1e-12   3.8e-10       2     138 ..     129     261 ..     128     263 .. 0.95
   2 ?    0.8   7.9      0.28     1e+02      10     134 ..     357     492 ..     348     496 .. 0.70

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1e-12
    TIGR00880   2 lllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                   +la yAlgq++++ +++     +  +++l+  ++++ +s++ + +s++   + ++   +Gf+aa + +     i+d ++  +r+ ++gl+ + + +g il+  + a++ ++ gwr +fl+ +l+++++++ l ++l
  MMETSP1174-20130828|23489_1 129 SMLACYALGQFMIGHFAQ----HLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRGWRHVFLMCGLVVMAFAAPLGLIL 261
                  69****************....7779**************************************************************************************************9999888766666 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.28
    TIGR00880  10 gqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.........snitvliiarilqGfgaaaalvagaaliadiikee..ersvalgllsagialgpilGpllGavlaqalgwralflilallallafill 134
                  g ++ +  +glltd++ +  ++l +l   vl+ l + +           n++ +++  +l++   ++   a+   + +  ++   + +++ gl++ +++lg+i   + ++ l + +gw  lf++l+++++ a++l+
  MMETSP1174-20130828|23489_1 357 GGVLGGVAAGLLTDKLVKGRMMLTTLPYSVLGCLSCLAWsfcvgrgdlVNVVCMVVVGFLVAGPDGILGGAASKNLCEYLNKPpsYAPAISGLVNGVASLGVIAMSACTSNLLDRFGWAGLFMALGVMMGGAAVLS 492
                  5567777888888888888877777777777666665445666666665555555555555444444444444444444433324888889999***********************************9999886 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   3.0     1e-10   3.8e-08      40     190 ..     121     271 ..     106     291 .. 0.88
   2 ?   -1.8   0.1      0.93   3.5e+02     248     316 ..     451     490 ..     439     500 .. 0.47

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1e-10
    TIGR00710  40 savqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekri 190
                   +  +  t+ l+  a+gq ++G ++  +  + +l    l+  +s ++l +s+++  + vl    +f+a+    +    + D ++      v ++         +la  + ++vl + +W+ +F +  l+ ++ +a++ l+lp     ++ +
  MMETSP1174-20130828|23489_1 121 HSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRGWRHVFLMCGLVVMAFAAPLGLILPAKDISQEEK 271
                  556777899***********************************************************999999999*******9899999999999999************************************999999766544333 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.93
    TIGR00710 248 falniialifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavailvgigvsl 316
                    + ++ +i +s  ++ l+ + g                             +a +++ + +++ g ++
  MMETSP1174-20130828|23489_1 451 NGVASLGVIAMSACTSNLLDRFG-----------------------------WAGLFMALGVMMGGAAV 490
                  44444444444444444444444.............................44444444444433333 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0  12.4     5e-09   1.9e-06       5     391 ..      80     472 ..      77     486 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 5e-09
    TIGR00891   5 kltrdqwnafsaaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLffls.ilpiilalflrkrvpeaevwkeklkakklvkt....rvdkvlggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialllg..qll..ivPvfalsaekavLglglfllqllvqGvwGil....Pkhlaelapa..daravvaGltYqlGnLaaalasiiearlaerl 391
                  k+t   +  f  +y++y+   f+   +++v   +a+e + ++  +a+  + +l+   +G  ++G +a + + r  l  +  l  v t+  + +++   + ++    G   +    l   +  +  P+ +r+ + Gl + +   G +la  v+ +v  ++g  Wr +f +  ++ + +a  l + +p   +  + +k+ + ++t    + ++ +gg +  ka        ++r  +   l   y+++ +    ++ +     lPty  + +g+    +  +  + + G ++Gg++ G l+++l + + ++ +l  +  ++l  +   f +++   v  + + ++ +lv G  Gil     k l e+ ++      ++ Gl   + +L+  + s   ++l +r+
  MMETSP1174-20130828|23489_1  80 KVTNRMKGLFALTYVAYIAIYFARKPMSVVKPVLAQE-GFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRG--WRHVFLMCgLVVMAFAAPLGLILPAK-DISQEEKKVENTQTgqqqQQQQQQGGMQQQKAERPVTFSEVVRLPGVLSLCTSYMLIKMARYCLMFW-----LPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLPYSvlGCLscLAWSFCVGRGDLVNVVCMVVVGFLVAGPDGILggaaSKNLCEYLNKppSYAPAISGLVNGVASLGVIAMSACTSNLLDRF 472
                  67777788999************99999887666554.7788999*******************************************999999988888888778888888888888888899************************************..*****885155555666666666643.3333333333333310004445556666666665556666777777777777777777777777776.....9***************************************99887777776544112331123457888777776666679999999999998333346677775431144556667777777777666666666666666 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  12.6   5.9e-08   2.2e-05      33     333 ..     117     417 ..      90     457 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.9e-08
    TIGR00886  33 gLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvisla.....misefFpkkevGtAlglaaGlGNlGggvaqlvmpaiieallkgagqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvksallslekeala............evlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklggarkllvlf.llvamgaalvvlglvkesseslavavvlfvvlflf 333
                  g+s+  la++    ++  a+  +++g++++ +  R+++  + ll  + ++ l +++ s+  + +l   +G aG+ F+ ++      +is  Fp +   t+ gl      +Gg +a  v+  + +             wr  +++   ++++++a l +++ a++ ++++++ +  + +++ +++++  +            ++ +v++ + +  l++ Y+        +   l++++  + g+  ++aga+as++ + g+l   ++Gll Dkl ++r++l+++   v+++  ++++++  + +  l  +v ++vv fl+
  MMETSP1174-20130828|23489_1 117 GFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSN-SAGAFSVL---AG-AGGFFAACVNpllviFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLA----------WRGWRHVFLMCGLVVMAFAAPLGLILPAKDISQEEKKVENTQTGQQQQQQQQ--QggmqqqkaerpvTFSEVVRLPGVLSLCTSYMLIKMARYCLMFWLPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLpYSVLGCLSCLAWSFCVG-RGDLVNVVCMVVVGFLV 417
                  56788888888888888899999*************99999999999988888888.66666555...45.56667776532333389******************************966655..........6789999999988888888888888888888888666666655444442222..1234566777888999*************************************************************************988877367888899999999876.45555555555555444 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.9   9.3e-05     0.035      26     170 ..     111     251 ..      89     275 .. 0.88
   2 ?    6.7   1.9    0.0015      0.56     261     336 ..     315     390 ..     300     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.3e-05
    TIGR00711  26 ptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivv 170
                  p + a+ g s+++++ v Ts +   a    + g+ a+ l  r++   + l+  +s++  +++n+  ++ +     gf+++ + pl    +   +p + r+++++l+  +   + +l    +  +     Wr +Fl+    G++v+
  MMETSP1174-20130828|23489_1 111 P-VLAQEGFSQHSLAMVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAWRGWRHVFLM---CGLVVM 251
                  4.445569999************************************************************************************************99999999999999999999999999986...455444 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
    TIGR00711 261 cvislllglalygavlllPlylqqvlgytalqaGlailpvglaalllsPiaGrladkidlrllvliglilyavgly 336
                  c   +l+ +a y  ++ lP y+   +g++a +aG++++      +l    aG l+dk+ + +++l +l   ++g+ 
  MMETSP1174-20130828|23489_1 315 CTSYMLIKMARYCLMFWLPTYFVSRIGMPAAKAGAMASFFDAGGVLGGVAAGLLTDKLVKGRMMLTTLPYSVLGCL 390
                  55678999*******************************99999999999*******9887777777766666654 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00034      0.13      86     141 ..     265     315 ..     262     325 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00034
    TIGR03490  86 dpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdldklkkelsfe 141
                  d+s+++     +k e+ ++ +++q +++++  ++qk ++ v fs++ +l + ls+ 
  MMETSP1174-20130828|23489_1 265 DISQEE-----KKVENTQTGQQQQQQQQQGGMQQQKAERPVTFSEVVRLPGVLSLC 315
                  455333.....345677777777777777779999****************99974 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   8.7   1.1e-05    0.0041     130     256 ..     125     254 ..     118     338 .. 0.88
   2 ?   -0.3   2.2       0.2        76     127     181 ..     346     399 ..     341     420 .. 0.75
   3 ?    1.1   0.5     0.078        29     129     171 ..     448     490 ..     443     503 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.1e-05
    TIGR00898 130 ltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird...WRwLlllvslPlvlfl 256
                  ++ +++     lG +++G+ +  +  +++L  + l  +vs++   +s +   f vl +  G++ a + +  +++i    p+++Ra+v+ l ++    G +l   +A l+     WR+  l+  l +++f+
  MMETSP1174-20130828|23489_1 125 MVDTSMLACYALGQFMIGHFAQHLTMRQMLCSAFLLCGVSTMGLSMSNSAGAFSVLAGAGGFFAACVNPLLVIFISDTFPVSMRATVVGLWQTSQQAGGILANNVAALVLAwrgWRHVFLMCGLVVMAFA 254
                  66666677777999****************************************************************************9999999999999999888775558888888887777776 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.2
    TIGR00898 127 kvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytv 181
                  k+  + s +  G  lG++  G l D++     ++l+tl  +v+g+l+ ++ ++ v
  MMETSP1174-20130828|23489_1 346 KAGAMASFFDAGGVLGGVAAGLLTDKLVKG-RMMLTTLPYSVLGCLSCLAWSFCV 399
                  6667889999****************9543.356788899999999999888864 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.078
    TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgv 171
                   l++ v  +Gv+  s+  ++l DrfG   +++   ++++   v
  MMETSP1174-20130828|23489_1 448 GLVNGVASLGVIAMSACTSNLLDRFGWAGLFMALGVMMGGAAV 490
                  5777888999999999999999999965544444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.51
# Mc/sec: 1322.48
//
Query:       MMETSP1174-20130828|23498_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 771.63
//
Query:       MMETSP1174-20130828|23499_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.3   0.0      0.046    9.6   0.0    1.8  1  TIGR00870 trp: transient-receptor-potential calcium channel protein
      0.029   13.0   0.0      0.046   12.3   0.0    1.3  1  TIGR04029 CMD_Avi_7170: CMD domain protein, Avi_7170 family
        4.2    5.7  11.1       0.74    8.1   0.9    2.7  3  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   3.4e-05     0.046     179     322 ..      59     210 ..      58     219 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.4e-05
    TIGR00870 179 espLnlaaclasesivsllsedpAdiltadslgntllhllviesefkaeyeelstqmydfllslldklrdskeLEailNhqgltplklaakegkkelfrlkLaikyk.........................qkkfvawpngqqllslydleeldglrekk.svleliav 322
                  + pL  aa  +  ++v+ll     di+++d  gnt lhl++            st    fll++ +         +i N  g+tpl+ a   g++e  r++L+  y+                         +kk      + ++l   +l +l++  +++ ++ e +++
  MMETSP1174-20130828|23499_1  59 RTPLHYAAYGGDRDMVALLCDYDTDIEAQDCRGNTPLHLSAARG---------STRTLLFLLEYAAS---V----DIQNVVGDTPLHHAVWFGNHECVRHLLE--YSatptmlnlygldpyenvmqrsplaqKKKLPHDLRCSLTLVKQWLLSLETNAHDQrASAETTTT 210
                  56888888888999999999999999999999999999999885.........56555566655555...4....6889999999999999999999999998..77778888888888888888888888656666666788888888888888877766455555544 PP

>> TIGR04029  CMD_Avi_7170: CMD domain protein, Avi_7170 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.4e-05     0.046      30      92 ..      23      87 ..      15     122 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.4e-05
    TIGR04029 30 qkSyeaLlepadagdfslaeRyavAakvak.lhqdeelaafYadlladeae.elveaieaaareg 92
                      aL++++ +gd+s+aeR+ +A    + + ++ +   +Ya+  +d++  +l+   +++++  
  MMETSP1174-20130828|23499_1 23 TSPMRALFAAVRDGDLSTAERAILAGVSPScVDEEVRTPLHYAAYGGDRDMvALLCDYDTDIEAQ 87
                 55578*******************98765514555567789***999999766666555555444 PP

>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.9   0.00054      0.74      20      38 ..       6      24 ..       3      25 .. 0.90
   2 ?   -3.0   0.0       1.6   2.2e+03       8      22 ..      83      97 ..      81     104 .. 0.64
   3 ?    1.8   1.6     0.049        67      33      41 ..     206     214 ..     194     215 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00054
    TIGR03892 20 vgassgatstsssSsCsTc 38
                 +g++sg++  +s+Ss+sT+
  MMETSP1174-20130828|23499_1  6 LGGGSGSGEDVSASSSSTS 24
                 6899***********9996 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
    TIGR03892  8 tfEisDyadlaevga 22
                 ++E +D  + +++  
  MMETSP1174-20130828|23499_1 83 DIEAQDCRGNTPLHL 97
                 578888777666655 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.049
    TIGR03892  33 SsCsTcsct 41 
                   +++T+++t
  MMETSP1174-20130828|23499_1 206 ETTTTTTTT 214
                  344555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 932.17
//
Query:       MMETSP1174-20130828|23503_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|23496_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-44  150.2   1.3      2e-44  149.8   0.9    1.1  1  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.9     5e-48     2e-44      93     434 ..       5     384 ..       1     389 [] 0.89

  Alignments for each domain:
  == domain 1    score: 149.8 bits;  conditional E-value: 5e-48
    TIGR00939  93 lvlvkvqlselgafvvimalvvlinsgkallqgslfglagefPstYtsavlsGqglaGvltsllkilvkasleds.eglkksaliYFilavvvilisivlylllrklkfarkyl......................................................ekkldkeaqedetkkelrskaeendepakgdkeskteelsaekepeskeeeevelktsvftvlkkvkllllavvlvFtvTLsvFPavavavtssteslskkqifyliiafllFNvfdllGrlltskllwpdeksrilvilvllRvlfipllllcnvkqrselpvliegdalfiilellfgfsnGYlvslamilaPkqvdngerevAgalmvifllvGlalGavlsflfk 434
                   +l  v +s+  a vv++a+ ++++   +++q s +g  g ++ ++t+a+ +G+g+ G+++ l+++++ka l+    gl+ s +i+Fi ++++i  +ivl+ +l +++ a k                                                        + k+  +++++    e+ s+ +  +  ++g+k    e+ +   +     +++ ++ +s+++vl kv   +  v+ +Ftv L  FP++++  +s   +l++   +++++++l++Nv dllG++l+  l + +     +v+  ++ + fipl++  +++         ++++   + ++ +g+s GY++  +m+l+P+ v++  + +Ag++m+  l+ Gl++G+++ +++ 
  MMETSP1174-20130828|23496_1   5 PILNMVGVSKPLALVVTIASQLIGSCMVTVVQQSSYGAGGFLGPQFTNALEVGKGIGGLIIILARVILKALLPPTpAGLEASTNIFFISSLLIIATTIVLWKALVRSPLASKKIsqyeeqrrrslcltspengpekanntipppsataaagaaavgtreetttilsgdHLKS-SPQRQQLIDIEMASPRS--TSGQRGEKVRGGEKVQLLLDAPPSGNNDQPGDASMKVVLSKVAGPAWVVCSTFTVCLACFPGMTTSLVSP--ELGD---WFPVLLVLAYNVADLLGKSLAGHLQLFSGT--TIVLPAVIHMGFIPLFVALVRS-------ADPSTLACFVTVATLGLSTGYVATSCMMLGPQCVPPSDKVMAGQVMSTCLIAGLFIGSLVGVVLG 384
                  56888999************************************************************************************************99999988888888******************************999999999999998876533332.45555555555555555..777778888888777777776667778888*************************************999..5777...7******************99888777776..688888899**********999.......667777788888999********************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1656.25
//
Query:       MMETSP1174-20130828|23501_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   13.5   0.2     0.0087   13.2   0.1    1.2  1  TIGR02904 spore_ysxE: spore coat protein YsxE
  ------ inclusion threshold ------
        5.8    3.7  12.7        9.3    3.1   8.8    1.3  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02904  spore_ysxE: spore coat protein YsxE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.3e-06    0.0087      59     129 ..     124     194 ..     100     223 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-06
    TIGR02904  59 fsrivPvyltkdgeyllk..egeklyYLmpWldeeekeernekvekmfqelallHrktvkeeevkeeelkkhy 129
                    +++Pv+++++ +  +   ++ ++  L p + e  +ee++  +e+m+ ela+  r+ ++  + +ee  +++ 
  MMETSP1174-20130828|23501_1 124 LLQCIPVFVNRFISVNAAgaNEWRYTILEPTVVEAPEEEEELTEEQMMAELARRKREIERRLKDEEE--REEL 194
                  4589*******99987761144555669**9998888888889*********977776665544333..3332 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   8.8    0.0045       9.3      28     101 ..     161     237 ..     142     247 .] 0.53

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0045
    TIGR01554  28 eeekkekdalkaeidkleaeierleea.aaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee..a 101
                  eee+ ++++++ae+++ + eier  +  +++ee +++++ ea+ + ++ ++  +++++++++  r++  ++a++  +
  MMETSP1174-20130828|23501_1 161 EEEELTEEQMMAELARRKREIERRLKDeEEREELARQRRAEAELSGPKPKQLSKKEQQELNERKRGQGNRTAKRapR 237
                  22222333488888888888887766654444444444444444444444444444444666444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.48
# Mc/sec: 679.19
//
Query:       MMETSP1174-20130828|23504_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 621.45
//
Query:       MMETSP1174-20130828|23507_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1174-20130828|23511_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|23510_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1555.87
//
Query:       MMETSP1174-20130828|23513_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 331.76
//
Query:       MMETSP1174-20130828|23512_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1116.83
//
Query:       MMETSP1174-20130828|23516_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    3.5  12.6        9.1    2.6   8.7    1.5  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.7    0.0022       9.1     121     243 ..      31     155 ..      19     225 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0022
    TIGR00437 121 eekLeerLGvpvvplsatkgrgie.elkkaide..ekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleie.kiekelaevvkkesesklsateiadeekvlveksi 243
                  e++L++rLG   + +++  + +i+ e++k+ide  ek + ++e++ +a e + ea+ ++e++ +++e+++++kk +  +e+ +  + l+ e + +++ +e+v+ + e  +s+ e  +  +++++k++
  MMETSP1174-20130828|23516_1  31 EDHLSKRLGNLDLDIVSDIKGDINaEVEKKIDErsEKLEFQLEDELEAFEKTLEARMQKEFDLHAEENDIHMKKLETEVEKRILTLELALEmRLRQKFEEIVEEKTE-RSSMIESGKL-EQKLHKNS 155
                  689******99999999877777527999**9533333344445555666666666777777777777777744444444444444444441445566666665555.3444444443.33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       443  (0.107996); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 820.47
//
Query:       MMETSP1174-20130828|23520_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1174-20130828|23524_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   12.3   0.5     0.0081   12.5   0.3    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
     0.0095   11.5   1.7     0.0097   11.5   1.2    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.028   12.6   0.3      0.042   12.0   0.2    1.2  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   5.9e-06    0.0081     218     275 ..      32      89 ..       5      92 .] 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.9e-06
    TIGR03185 218 lkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkele 275
                  ++e      + ++e++++++++++ +++le le++fe++Gg+  e  e+l r  +e+ 
  MMETSP1174-20130828|23524_1  32 YEEIALGHATSQKELQKFQNKASKYKTQLEALENDFEDSGGQEGELSEKLARTGEEVD 89 
                  56666667788999***************************99999988888777765 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   1.2   7.1e-06    0.0097     213     291 ..      11      89 ..       2      92 .] 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.1e-06
    TIGR02168 213 ekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelq 291
                  + ++++ ++++++ ++l   ++ee     ++ ++el++ +++ ++++++l++le+++e+   +  el+e+l++  +e++
  MMETSP1174-20130828|23524_1  11 QSLIAIADDIKKWMVKLFWVEYEEIALGHATSQKELQKFQNKASKYKTQLEALENDFEDSGGQEGELSEKLARTGEEVD 89 
                  5666777888888888888888888888888888888888888888888888888888888888888888877766655 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2     3e-05     0.042      12      75 ..      25      86 ..      20      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-05
    TIGR03495 12 lalglqsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaea 75
                 + l++++++  ++ +  ++ +k+l++ q++++k + qleal+ + + +  ++ +L ++la + +
  MMETSP1174-20130828|23524_1 25 VKLFWVEYEEIALGH--ATSQKELQKFQNKASKYKTQLEALENDFEDSGGQEGELSEKLARTGE 86
                 567777777444444..34447999999****************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 404.77
//
Query:       MMETSP1174-20130828|23525_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    6.3  20.4       0.47    5.8   0.8    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.42    7.3  13.6       0.69    6.6   4.3    2.1  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.91    5.7  12.4       0.26    7.5   3.6    2.0  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
        1.5    5.9  15.7        1.1    6.4   7.1    2.0  2  TIGR02971 heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
        4.6    4.0  14.6       0.64    6.8   0.2    2.1  2  TIGR00414 serS: serine--tRNA ligase
        4.6    2.6  15.4        1.1    4.7   6.1    2.0  2  TIGR02680 TIGR02680: TIGR02680 family protein
        8.7    3.2  17.9       0.11    9.3   5.0    2.0  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   8.3   0.00089      0.52     404     497 ..       5      99 ..       2     109 .. 0.66
   2 ?    5.8   0.8    0.0008      0.47     461     504 ..     166     210 ..     157     218 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00089
    TIGR02169 404 elkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklke.eleklekelselerelaele 497
                  e +r  ++ l+ l+++++e a l+ael++i+  + ele+++++ +   ++++++l++  +  +ka++ l+k+ + + e    + +el+ el++ e
  MMETSP1174-20130828|23525_1   5 EAQRLAEKELDSLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDALEKTAKiKHEGAAVKNTELRAELKRSE 99 
                  56667778888888888888888888888888888888888888888888888887777777777766655432133333444445555555444 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0008
    TIGR02169 461 lkedlekae.kelrklkeeleklekelselerelaeleaqakase 504
                  l+e++ +++ ++l + k+++++le+el ++++ela+ +++++ +e
  MMETSP1174-20130828|23525_1 166 LEEEMISLKaHKLPRAKTTIAELEDELAAQKEELARCKKEKRSLE 210
                  333333333144556666666666666666666666666665544 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.3    0.0012      0.69     122     208 ..      15     101 ..       2     112 .. 0.72
   2 ?    5.4   0.5    0.0027       1.6     224     276 ..     162     214 ..     155     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0012
    TIGR01843 122 avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelq 208
                  ++ +  + +++ ++++++ ++  +++le++ k +    e  +++l++  ++++ +++ le + k+k++g+  +++ L +e +r e+ 
  MMETSP1174-20130828|23525_1  15 DSLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDALEKTAKIKHEGAAVKNTELRAELKRSEMG 101
                  444555666777777777777777777777777777777777777777788888888888888888888888888888888887765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0027
    TIGR01843 224 eldeleeklqeleqkfreevseelreaqarlaeleeelskardrlqrliirsP 276
                  +l+elee++ +l+++   ++++ + e +++la  +eel++ +++ + l+i+ P
  MMETSP1174-20130828|23525_1 162 QLAELEEEMISLKAHKLPRAKTTIAELEDELAAQKEELARCKKEKRSLEIQCP 214
                  78889999999999999999999999999999999999999999988888877 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.6   0.00044      0.26     220     283 ..      12      75 ..       3     113 .. 0.81
   2 ?    2.7   0.5     0.012       7.2     401     464 ..     164     205 ..     152     215 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00044
    TIGR03185 220 eqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavra 283
                  +       +++e aalr el+  +r +++lek++++e g++ ++ e+l++++k +++++ a+++
  MMETSP1174-20130828|23525_1  12 KELDSLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDALEK 75 
                  3445566788899999999999999999999999999999999999999999999887766544 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.012
    TIGR03185 401 eeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrke 464
                  +eleee+  l+                       +++ +++++i+e++++l ++ke++   +ke
  MMETSP1174-20130828|23525_1 164 AELEEEMISLKA----------------------HKLPRAKTTIAELEDELAAQKEELARCKKE 205
                  334444433333......................234444444444444444444444444443 PP

>> TIGR02971  heterocyst_DevB: ABC exporter membrane fusion protein, DevB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.1    0.0018       1.1      61     145 ..      14      98 ..       3     108 .. 0.83
   2 ?    2.8   0.2     0.024        14     103     179 ..     182     209 ..     152     216 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0018
    TIGR02971  61 ktqldeAkarlaqrragakkievaasrlaraaakkvkdvaaqqaklnrleaeletaqrelerykslkkdgavsesaldskklkle 145
                   + l eA+a+ a+ ra+ + i+  + +l+++a+ +  d  a++ +l+   +++++a+  le+ ++ k++ga  ++   + +lk++
  MMETSP1174-20130828|23525_1  14 LDSLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDALEKTAKIKHEGAAVKNTELRAELKRS 98 
                  567899******************************************99*********************65555445555554 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.024
    TIGR02971 103 qaklnrleaeletaqrelerykslkkdgavsesaldskklkleeaeeeleeakaslseqleeekaalasiaeevrel 179
                  ++++                                                 a+l+++l+ +k +la+ ++e+r l
  MMETSP1174-20130828|23525_1 182 KTTI-------------------------------------------------AELEDELAAQKEELARCKKEKRSL 209
                  1122.................................................222244444444444444444444 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   6.1     0.065        38      25      94 ..      10      79 ..       3     106 .. 0.69
   2 ?    6.8   0.2    0.0011      0.64      64     110 ..     178     223 ..     156     229 .] 0.66

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.065
    TIGR00414 25 veidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelke 94
                 +e +l+ l+e++++  +l+ +++ +++ + el+k+ ++++++ ++k e+l+ elk+ k+  ++le+  k 
  MMETSP1174-20130828|23525_1 10 AEKELDSLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDALEKTAKI 79
                 4556788888888888888888888888888888888888888877777888777777666666554432 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0011
    TIGR00414  64 kaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlv 110
                    + k +i+el+ el  +keel++ ++e + le +  e+  k p+++
  MMETSP1174-20130828|23525_1 178 LPRAKTTIAELEDELAAQKEELARCKKEKRSLEIQCPEI-PKCPEIP 223
                  333444588899999999999999999887777777666.6667663 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.1    0.0018       1.1     882    1002 ..       4     125 ..       1     134 [. 0.72
   2 ?    2.2   0.3     0.011       6.3     276     771 ..     183     209 ..     161     217 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0018
    TIGR02680  882 eqreraeraese.areaaedaaearaeaeeaslrlraleesvgaevdeirarlaevraaleslkrelrrlaeelataeeararaeeke.aeaeaelderaeardhaktllrelaltglledal 1002
                   ++++r+++ e + +rea+++ a+ rae++ +++   +le+    e  +  a+  + r++l+++k+   +l e+ a+++++ a  +++e  ++ ++ +  +  +++a +l+ ++ l  l+  a 
  MMETSP1174-20130828|23525_1    4 GEAQRLAEKELDsLREAHAENAALRAELNGIKRVKDELEKNAKTEHGDFEAKNENLRTELKRIKKAKDAL-EKTAKIKHEGAAVKNTElRAELKRSEMGNSEKQWALGLVVSFVLCALMAVAA 125 
                   5567777777652577788888899999999999999999999999999999999999999987755544.5555555555555555535555666777888999999999998887765554 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.011
    TIGR02680 276 kqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelgalaldarrqdadrviaerselvallrrrvdeadeaeaesaaaraardeldeeaeqaaaraeladeavdeeeavlaaadawqaqleeltalavdeavsaLadldslaallqgeapvreavesavqkladelareraalrlaeekleeerdalrtererleeeedeeppppatRaalrraaragaplyrlvdFaedvpadvraglEaALeaaGLLDAwvaAdgtlqdpdgdevllvpatvapgetladvLrpelapavsaeaqvevdlaavtrvlegialgeadagaaetaidvdGrfrLgvlrGawakpeaeyiGaaaRerarlrrlaeldarlaevdaelaelarelrel 771
                  +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      +ael+ +la+ ++ela+ ++e r l
  MMETSP1174-20130828|23525_1 183 T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIAELEDELAAQKEELARCKKEKRSL 209
                  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................34455555555555555554444444 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.0    0.0002      0.11       1      82 [.      17      97 ..      17     124 .. 0.66
   2 ?   -0.5   1.9      0.19   1.1e+02      25      60 ..     169     204 ..     158     212 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0002
    TIGR01554  1 lkelreklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeea 82
                 l+e  ++ a+l +el+ ++  ++e e  ++++ +   +a+ ++l +e++r+++a++++e+ ++ + e+++ +++e +a+ ++
  MMETSP1174-20130828|23525_1 17 LREAHAENAALRAELNGIKRVKDELEKNAKTE-HGDFEAKNENLRTELKRIKKAKDALEKTAKIKHEGAAVKNTELRAELKR 97
                 57888899999999995555544444433333.3337777777777777777777777777777777666666665554443 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.19
    TIGR01554  25 eeaeeekkekdalkaeidkleaeierleeaaaeeea 60 
                  e++  ++ +   +k+ i++le+e+++++e++a+ ++
  MMETSP1174-20130828|23525_1 169 EMISLKAHKLPRAKTTIAELEDELAAQKEELARCKK 204
                  233333333333666666666666666666444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 915.92
//
Query:       MMETSP1174-20130828|23526_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   65.8   0.1    1.1e-18   65.6   0.0    1.0  1  TIGR01230 agmatinase: agmatinase
    1.6e-11   41.8   0.2    1.8e-11   41.7   0.1    1.0  1  TIGR01227 hutG: formimidoylglutamase
    4.4e-08   30.6   0.0    4.5e-08   30.6   0.0    1.0  1  TIGR01229 rocF_arginase: arginase
     0.0098   12.6   0.0       0.01   12.5   0.0    1.1  1  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family


Domain annotation for each model (and alignments):
>> TIGR01230  agmatinase: agmatinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.1e-21   1.1e-18     206     274 ..       1      74 [.       1      75 [. 0.88

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.1e-21
    TIGR01230 206 iDvlDPafaPGvgtpepgGltskellk.lfvlaek....ekkvvGlDvvEvaPvydssevtaltaaklalelll 274
                  +DvlDPafaPGv+  epgGl++++++  l+vl++     +  v+G+DvvE+ P  d s +ta++aak+ +ell+
  MMETSP1174-20130828|23526_1   1 MDVLDPAFAPGVSHHEPGGLSTRQAIDaLHVLHMLgdagSIDVIGADVVELNPSRDPSGITAMAAAKISKELLG 74 
                  8**********************9999877776541112568*****************************996 PP

>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   1.7e-14   1.8e-11     239     306 ..       1      73 [.       1      74 [. 0.84

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1.7e-14
    TIGR01227 239 lDVldaasAPGvsApaagGleleellelvkria...asd..kvrgveivEvnPtlDaddrTarlaArlvahll 306
                  +DVld a+APGvs   +gGl++++ +++++ +      +   v g+++vE+nP+ D  + Ta +aA++ ++ll
  MMETSP1174-20130828|23526_1   1 MDVLDPAFAPGVSHHEPGGLSTRQAIDALHVLHmlgDAGsiDVIGADVVELNPSRDPSGITAMAAAKISKELL 73 
                  9*********************99877766654111333358999**********************988765 PP

>> TIGR01229  rocF_arginase: arginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.4e-11   4.5e-08     226     296 ..       1      74 [.       1      78 [] 0.81

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.4e-11
    TIGR01229 226 vDglDpklapatGtpvrgGltfrEg...klilelllesgl..ltaldlvEvNPtldikeksetikaavelvesllg 296
                  +D+lDp +ap++   ++gGl+ r +     +l +l ++g+  ++++d+vE+NP+ d    + t+ aa ++ + llg
  MMETSP1174-20130828|23526_1   1 MDVLDPAFAPGVSHHEPGGLSTRQAidaLHVLHMLGDAGSidVIGADVVELNPSRD--PSGITAMAAAKISKELLG 74 
                  69*********************75222677888889887225899********99..777888888888888887 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     1e-05      0.01     254     283 ..      20      49 ..       8      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1e-05
    TIGR01456 254 agskqsaapfkklymvGDnPksDiiGarqa 283
                   +++q+   ++ l+m+GD   +D+iGa  +
  MMETSP1174-20130828|23526_1  20 LSTRQAIDALHVLHMLGDAGSIDVIGADVV 49 
                  58999999*******************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1174-20130828|23532_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|23529_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1174-20130828|23534_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 923.92
//
Query:       MMETSP1174-20130828|23535_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1169.05
//
Query:       MMETSP1174-20130828|23537_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.56
# Mc/sec: 551.53
//
Query:       MMETSP1174-20130828|23538_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 782.51
//
Query:       MMETSP1174-20130828|23540_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   18.5   0.1     0.0002   18.2   0.0    1.5  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    0.00034   17.6   0.1    0.00038   17.4   0.0    1.3  1  TIGR03828 pfkB: 1-phosphofructokinase


Domain annotation for each model (and alignments):
>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.7e-08    0.0002     224     285 ..      88     163 ..      10     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.7e-08
    TIGR03168 224 Gallvtkegalkaeapkve..vvstvGAGDsmvAgfllalekgl............sleealrlavAagsaaasse 285
                  Ga+ v+  +++  + p+    v s+vGAGD++ A+  +a++  +             + +a+++++A+g a+  ++
  MMETSP1174-20130828|23540_1  88 GAYEVSTGRHWVLKLPPLPdpVMSPVGAGDATAAATFHAWQLLAssddgmseqtlpAAVRAFTFGLACGGASCLTS 163
                  788888888777666655444**************99998754411111111111122344555556665555555 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.9e-07   0.00038     224     280 ..      88     146 ..      10     182 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.9e-07
    TIGR03828 224 Gallvtkegalfaka..pkievkstvGAGDsmvAgfllalekglsleealrlavAvgaa 280
                  Ga+ v+  + ++ k       v s vGAGD++ A+  +a++  +s ++ ++  +  +a 
  MMETSP1174-20130828|23540_1  88 GAYEVSTGRHWVLKLppLPDPVMSPVGAGDATAAATFHAWQLLASSDDGMSEQTLPAAV 146
                  888888888888777224556**************999987655555433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 872.07
//
Query:       MMETSP1174-20130828|23545_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.49
# Mc/sec: 1371.07
//
Query:       MMETSP1174-20130828|23543_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 1768.65
//
Query:       MMETSP1174-20130828|23554_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|23552_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   29.1   0.0       0.01   13.8   0.0    3.5  4  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.085   3.5e+02       8      40 ..     136     168 ..     130     179 .. 0.84
   2 ?   -2.4   0.5      0.25     1e+03      53      71 ..     321     339 ..     314     354 .. 0.48
   3 !   10.4   0.0   2.8e-05      0.11      10      94 ..     370     456 ..     361     473 .. 0.81
   4 !   13.8   0.0   2.5e-06      0.01      82     113 ..     597     629 ..     563     635 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.085
    TIGR00229   8 railesspdaiivvdeeGnilyvNrafeeifGY 40 
                  r+i+++s+ +++++  ++   ++N+a +++ G+
  MMETSP1174-20130828|23552_1 136 RLIVQNSDMGVVITGPQNPGYHINDAKAQLNGL 168
                  89******9999999999999999999998887 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.25
    TIGR00229  53 lipeedreevrerierrle 71 
                  ++ e +++e r+r++r+  
  MMETSP1174-20130828|23552_1 321 VMEEREKQEERKRQRRAAN 339
                  3434444444444444433 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 2.8e-05
    TIGR00229  10 ilesspdaiivvd.eeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrv.krkdGseiwve 94 
                  il+  pd +i v    G+i +++++  + + Y+++ l G +++ ++++e ++++r++++ + +   e+++  ++   +k+Gs ++  
  MMETSP1174-20130828|23552_1 370 ILDLLPDIVICVEpTTGRINFASKSCGRKLMYKSDLLAGTSLFSIVSPESHNQLRALLNVDMTHDLEINEDAEKCtHNKNGSSMPPT 456
                  55556665555542689******************************************9999888999999999999***988755 PP

  == domain 4    score: 13.8 bits;  conditional E-value: 2.5e-06
    TIGR00229  82 rvkrkdGseiwvevsvspird.aggelgvvgiv 113
                   v rkdG++ w+ev+v+p+++ +++++ ++ ++
  MMETSP1174-20130828|23552_1 597 CVLRKDGTKAWCEVNVRPYQNdKNTPPEIILSF 629
                  347*****************9888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2125.02
//
Query:       MMETSP1174-20130828|23561_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 754.22
//
Query:       MMETSP1174-20130828|23562_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 834.17
//
Query:       MMETSP1174-20130828|23564_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1174-20130828|23565_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       387  (0.0943442); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|23567_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 515.58
//
Query:       MMETSP1174-20130828|23563_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1285.46
//
Query:       MMETSP1174-20130828|23572_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 427.83
//
Query:       MMETSP1174-20130828|23571_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 943.33
//
Query:       MMETSP1174-20130828|23574_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.48
# Mc/sec: 115.49
//
Query:       MMETSP1174-20130828|23580_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|23583_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|23581_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 776.85
//
Query:       MMETSP1174-20130828|23584_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 425.30
//
Query:       MMETSP1174-20130828|23585_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.13s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 2050.91
//
Query:       MMETSP1174-20130828|23590_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|23593_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|23595_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   18.5   0.0    0.00018   18.4   0.0    1.0  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.5e-08   0.00018     180     226 ..       3      52 ..       1      63 [. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.5e-08
    TIGR01133 180 renkltilvlGGSqGAkilNelvpkalaklaek...lilviiqagkqdle 226
                  +++k+ +lv+GG  G   l+++v +++akl+ +   + l ++++ +++l+
  MMETSP1174-20130828|23595_1   3 NPDKPMVLVVGGGEGVGSLSDIVNQLYAKLTLQgvdATLCVVCGRNEKLK 52 
                  799****************************9977544555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 276.35
//
Query:       MMETSP1174-20130828|23592_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-05   20.1   0.0     0.0001   19.6   0.0    1.2  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0012   16.2   0.0     0.0015   15.8   0.0    1.1  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
     0.0063   13.7   0.0     0.0094   13.2   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D
  ------ inclusion threshold ------
      0.028   11.9   0.0      0.044   11.2   0.0    1.3  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
      0.037   11.0   0.0      0.051   10.6   0.0    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-07    0.0001     196     248 ..      79     132 ..      73     135 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.3e-07
    TIGR02427 196 tlviaGdeDgstPpe.lvreiadlvpgarfaeieeaaHlpnleqpeafaallrd 248
                  +l++ G++D   Pp+  + +  +++p+ +f  +ee++H p +eqp+ +a++l++
  MMETSP1174-20130828|23592_1  79 ALLLWGRQDEILPPAeYLPKFMAALPDVTFRWVEECGHSPHIEQPAVVAEALKA 132
                  57889*****9999747899*****************************99976 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-06    0.0015     200     251 ..      81     134 ..      62     135 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
    TIGR03695 200 ylvGekDekF..kkiakemqkllpalklevieeaGHnihlenpeafakileefl 251
                  +l G +De    ++   ++ + lp+++++ +ee+GH  h+e+p+  a++l++++
  MMETSP1174-20130828|23592_1  81 LLWGRQDEILppAEYLPKFMAALPDVTFRWVEECGHSPHIEQPAVVAEALKALI 134
                  55566666542222334556699*************************999876 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05    0.0094     200     253 ..      79     132 ..      64     137 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
    TIGR03611 200 pvlliaakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellld 253
                    ll   +D++L P     +++++LPd ++  +e  gh+  + +p  + e+l +
  MMETSP1174-20130828|23592_1  79 ALLLWGRQDEILPPAEYLPKFMAALPDVTFRWVEECGHSPHIEQPAVVAEALKA 132
                  5678889****************************************9999876 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.3e-05     0.044     191     244 ..      79     133 ..      73     134 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.3e-05
    TIGR01738 191 vLrlyGqkDalvPa.kvvealdklapqsellvlekaahaPflshaeafaallref 244
                   L+l+G++D + P+ +  ++  + +p      +e+ +h+P + +++ +a++l+++
  MMETSP1174-20130828|23592_1  79 ALLLWGRQDEILPPaEYLPKFMAALPDVTFRWVEECGHSPHIEQPAVVAEALKAL 133
                  699*******987516789999999************************999987 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.3e-05     0.051     225     267 ..      78     121 ..      63     135 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.3e-05
    TIGR03343 225 ktlvtwgrddrfvpldhgl.klvanlpdaqlhvfsrcghwaqwe 267
                   +l+ wgr+d ++p  + l k++a lpd  +     cgh    e
  MMETSP1174-20130828|23592_1  78 SALLLWGRQDEILPPAEYLpKFMAALPDVTFRWVEECGHSPHIE 121
                  46889******9987777669******************87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 895.05
//
Query:       MMETSP1174-20130828|23601_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 361.03
//
Query:       MMETSP1174-20130828|23599_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.87
# Mc/sec: 379.28
//
Query:       MMETSP1174-20130828|23603_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-17   61.6   0.0      2e-17   61.3   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.2e-09   35.8   0.0    2.3e-09   34.9   0.0    1.4  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
      0.006   14.2   0.1     0.0082   13.7   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
  ------ inclusion threshold ------
      0.019   12.9   0.0       0.03   12.2   0.0    1.2  1  TIGR02359 thiW: thiW protein


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.9e-20     2e-17      12     176 ..      21     186 ..      11     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 1.9e-20
    TIGR03633  12 PdGrlyqveYareavkrgttavGiktkeg.vvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk..earlfetdPsGalleykavaiGagrekvlellekeyk 176
                    Grl q+eY   a ++g + v     +  v++  +  +++ l  +e+   i+k+ +  + a++Gl +Da+vl+ + r+ ++ +  t++ p+  + la ++a  + + t +GG r f    l+aG d++  e++lf+    G+l +y+ va+G+g +++++ l    +
  MMETSP1174-20130828|23603_1  21 AKGRLRQLEYTIRATQQGCSVVAACNGNCsVIVGWNGAVADALALPED-TIIWKVGESHCLAATGLSSDAQVLVRFLRRLNVEHTATFGRPMPTQRLASNLAKRIHAST-MGGSRAFAAQCLVAGYDSDddECQLFHVSAMGQLRSYQRVALGRGADTANKRLTVLLE 186
                  68*****************99987666651555556666666655555.57****************************************************999877.8**************9765449*************************99988865554 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.3e-12   2.3e-09      35     137 ..      71     178 ..      63     204 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2.3e-12
    TIGR03634  35 vfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskf...lpflvqllvgGvde..egpklyslDplGsiiedkytatGsGspval 137
                  + k+ +   l+ +G+ +daq lvr+l+       ++ +++++++ la+ l++ +++s +    +f++q+lv+G+d+  ++ +l+ + ++G + + + +a G G+ +a 
  MMETSP1174-20130828|23603_1  71 IWKVGESHCLAATGLSSDAQVLVRFLRRLNVEHTATFGRPMPTQRLASNLAKRIHASTMggsRAFAAQCLVAGYDSddDECQLFHVSAMGQLRSYQRVALGRGADTAN 178
                  678889999******************99999999***********999999888886533378**********97446799**********************9995 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     8e-06    0.0082      36     162 ..      71     193 ..      34     223 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8e-06
    TIGR03690  36 vekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseed 162
                  + kv ++   +a+g++  a + v + +    ++eh     G+p+  +  a+ la+ ++       + +a+  l++Gyd ++++ ++f   ++g +    +  + G G+  a+  l  l +++ +ee+
  MMETSP1174-20130828|23603_1  71 IWKVGESHCLAATGLSSDAQVLVRFLRRL--NVEHT-ATFGRPMPTQRLASNLAKRIHASTMGGSRAFAAQCLVAGYDSDDDECQLFHVSAMG-QLRSYQRVALGRGADTANKRLTVLLERGGTEEE 193
                  44555555566666666666666666655..55665.467*******************999999*********************9887766.555666778999999998888888776655544 PP

>> TIGR02359  thiW: thiW protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.03      35     134 ..      43     144 ..      32     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3e-05
    TIGR02359  35 hvvnvvaavllGPlyalavAlii..gllRnllglgtvlalpGgiiGa.llagllyrfgrklllaslgEvlGtgiiGsllalpvaayllGsseafallvlllaf 134
                   + n  ++v++G   a+a Al++    +   +g    la +G    a +l+ +l+r++ +++ a+ g ++ t  + s la  + a  +G s afa+  l+ ++
  MMETSP1174-20130828|23603_1  43 AACNGNCSVIVGWNGAVADALALpeDTIIWKVGESHCLAATGLSSDAqVLVRFLRRLNVEHT-ATFGRPMPTQRLASNLAKRIHASTMGGSRAFAAQCLVAGY 144
                  578999******99999877776225777778888999999977777255666677666665.56*****************************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 936.20
//
Query:       MMETSP1174-20130828|23606_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:01.14
# Mc/sec: 181.34
//
Query:       MMETSP1174-20130828|23607_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.2   3.6      0.059   10.7   2.2    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.2   1.4e-05     0.059      18      49 ..      53      84 ..      41      97 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.4e-05
    TIGR03724 18 lkavvKeRvkKsYrhpelDeklrkeRtrkEar 49
                  k ++++R +++Y +  + ++lr++R r+E +
  MMETSP1174-20130828|23607_1 53 AKEIIRRRAERNYGKTGIQKELRNQRLRNERK 84
                 688***************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 691.62
//
Query:       MMETSP1174-20130828|23609_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|23605_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-24   81.9   0.0    1.3e-23   81.5   0.0    1.1  1  TIGR01426 MGT: glycosyltransferase, MGT family
      3e-06   24.6   0.0    4.3e-06   24.0   0.0    1.2  1  TIGR00661 MJ1255: conserved hypothetical protein
     0.0019   15.1   0.0     0.0028   14.5   0.0    1.1  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase


Domain annotation for each model (and alignments):
>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   9.6e-27   1.3e-23     224     391 ..      34     210 ..      17     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 9.6e-27
    TIGR01426 224 kgkpvvlisLGtvfneqpslyrtfveAf...kdld..whvvlsvgkkvdpaelgelPkNvevr..qyvpqlevLek..adllvtHgGmnstmealaagvPlvavPqgadqeltarriaeLglgrvlekeevTaekLreavlavlsddevaerlkkirkeireaGGarrAAdeiekll 391
                   +  vv+++LG +   ++   ++ veA+   +d    + v+ + +    +     lP+N+ ++    vp+l+vL++   +++v+H Gm +++eal+ + Pl+ +P   dq+ +a r+  Lg+g+vl+k+ + ++ +re++ ++l dd++ ++ ++  +++r+aGG   AA  +e  l
  MMETSP1174-20130828|23605_1  34 TNAGVVYVALGNMPYLDKMQAQMLVEALsvmSDDTtqFRVLWMAALDQRATLPATLPPNFRAKvlGAVPHLKVLSHesVRAVVSHCGMAGAQEALYLSKPLLCIPFFVDQPDVAARVRALGAGIVLDKNSLRVDVIRESIIDLLLDDKYHKAAAEAAHTLRRAGGLFGAASAVESAL 210
                  5677999999998555555555555555111444422444444444433333467*****8662268*******8833579******************************************************************************************999765 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.2e-09   4.3e-06     246     304 ..     110     166 ..     104     186 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 3.2e-09
    TIGR00661 246 ksaeavitsGGfelisEALalgkpllvvPvlgqfEqvsnAvklekLGlgevleykelel 304
                  +s  av+++ G     EAL+l kpll +P     +q   A ++  LG g+vl++  l++
  MMETSP1174-20130828|23605_1 110 ESVRAVVSHCGMAGAQEALYLSKPLLCIPFF--VDQPDVAARVRALGAGIVLDKNSLRV 166
                  67889************************85..56777899************998764 PP

>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-06    0.0028     260     342 ..     116     195 ..     109     205 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2e-06
    TIGR01133 260 IsRAGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqkellteklveklkkllkdearleemaeaaqklak 342
                  +s  G    +E +++  P + iP+     dq   a  + ++gag+vl+ ++l  + + e++ +ll d++  ++ aeaa +l +
  MMETSP1174-20130828|23605_1 116 VSHCGMAGAQEALYLSKPLLCIPFF---VDQPDVAARVRALGAGIVLDKNSLRVDVIRESIIDLLLDDKYHKAAAEAAHTLRR 195
                  55556566679*************9...478888899**************99999***********9999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 1588.27
//
Query:       MMETSP1174-20130828|23610_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.21s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|23611_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1174-20130828|23612_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|23620_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   32.6   0.5    1.2e-08   32.3   0.4    1.0  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family
  ------ inclusion threshold ------
       0.13   10.7   3.8       0.07   11.6   0.6    1.9  2  TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE


Domain annotation for each model (and alignments):
>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.4   5.9e-12   1.2e-08     183     308 ..      20     151 ..       3     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 5.9e-12
    TIGR00902 183 pkdeiredevqndva....flallknpqtlrvliavgllqGahaayyvysaiywtai.GisvsavsllwslGvlaevvlfalsrklfrrisirvlllisalagvvrwaviGa.iedlpllillqllhsltya 308
                  pk+  ++ ++++  +     + ll+ p tl ++ a+  +    aa  ++  i+ t++ G     v+  +      e+ +f++s k+ + i ++ +l+is ++   r    G+ +++ ++ ++l+ lh+ t++
  MMETSP1174-20130828|23620_1  20 PKGRKEKANSTTTPGigdqLMELLRHPLTLPFMTALFCIGALFAAMNAFVYIWMTSVlGADYVLVGAAFLTLNFCEIPVFLYSGKVSEWIGVHGILYISGVTYGIRLYAYGYrVKNAWWTVVLEPLHAITFS 151
                  5555555555554332222689******************************9998658888888888888889****************************999999999857899*************97 PP

>> TIGR02112  cyd_oper_ybgE: cyd operon protein YbgE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.27   5.6e+02      22      35 ..      55      68 ..      38      84 .. 0.60
   2 ?   11.6   0.6   3.4e-05      0.07      34      82 ..     100     149 ..      75     155 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.27
    TIGR02112 22 lllallvlwdperf 35
                 l+ ++ ++  +++f
  MMETSP1174-20130828|23620_1 55 LFCIGALFAAMNAF 68
                 33333333333333 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3.4e-05
    TIGR02112  34 rfaaalggleavlallliwavcasv.ihGvGfrprkvlwqllFsPllali 82 
                   ++ ++++   v+ +l i +v+ ++ ++  G+r+++ +w ++  Pl a++
  MMETSP1174-20130828|23620_1 100 LYSGKVSEWIGVHGILYISGVTYGIrLYAYGYRVKNAWWTVVLEPLHAIT 149
                  4788999999999999999999986589*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 595.84
//
Query:       MMETSP1174-20130828|23624_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 268.38
//
Query:       MMETSP1174-20130828|23625_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 685.49
//
Query:       MMETSP1174-20130828|23627_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 739.14
//
Query:       MMETSP1174-20130828|23626_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-07   27.5   0.0      5e-07   27.1   0.0    1.1  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-10     5e-07      18      91 ..      77     150 ..      64     162 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.2e-10
    TIGR00599  18 psLapldtslRChvCkdffkaPvltsCsHtFCslCiRrcLseepkCPlCraedqEskLRknfvveEivesfknl 91 
                  +++ ++ + l C +  d +  Pv+t+ +Ht+    i  +L   + CPl r +     L +n vv+  ve+f +l
  MMETSP1174-20130828|23626_1  77 AAVVQVAQHLICPLTLDLMLHPVMTPYGHTYEREAILAHLAISATCPLTREPLFAENLVGNRVVQQAVEAFMAL 150
                  5678999*********************************************9999***************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 573.11
//
Query:       MMETSP1174-20130828|23631_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.2   0.0      0.006   13.5   0.0    1.3  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-06     0.006     250     316 ..     129     199 ..     117     203 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-06
    TIGR00747 250 qAnlRiieala....kklelkeekvvktvekygntsAasiplaldelleegkikkgdlllleafGgGltwg 316
                   AnlRi+ a +     +l+ +e ++ k +    nt+A  ++l l ++ +   ++++d   +++fGgG t g
  MMETSP1174-20130828|23631_1 129 EANLRIVAADRtcagARLQAEEARMGKVDYSKVNTAAKLVGLPLPQMPHITPLNTEDSTPMTGFGGGTTTG 199
                  69****98754222269**************************************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 976.11
//
Query:       MMETSP1174-20130828|23634_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.53
# Mc/sec: 268.96
//
Query:       MMETSP1174-20130828|23636_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 284.60
//
Query:       MMETSP1174-20130828|23635_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       493  (0.120185); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1030.53
//
Query:       MMETSP1174-20130828|23640_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 364.91
//
Query:       MMETSP1174-20130828|23637_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 892.66
//
Query:       MMETSP1174-20130828|23641_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|23642_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   28.4   0.0    2.1e-07   27.9   0.0    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
      0.005   13.8   0.0     0.0075   13.2   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     1e-10   2.1e-07      15     183 ..      14     191 ..       9     201 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1e-10
    TIGR02160  15 daveisfevPeelaedyrfepGqhltlka....eldGeelrrsysicdava.dgeirvavkkie...GGlfstwaneeiraGd..tlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereae 183
                  d+  ++f vP  l+   + +p     l      e +  +l +sys  + +a  +++ + vk+ +   GG + +++  ++ +Gd  t+ v  P+   +s+    r +++  +a G+Gi+P+l   +   a +  + + l+y n+++++++++eel+ l      +f+++  l++ +++++
  MMETSP1174-20130828|23642_1  14 DSKVLRFSVPSTLQPLAVPAPSGVKVLWNttdeESNVMQLEKSYSPISLPAeTSHVDLLVKAYPpriGGGLGAFLC-GLGQGDtaTMKVKPPRSIHGSENVLGRWDRLGFIAGGTGIAPFLQDGADASAGDSTTSLRLLYVNKKEEDILMKEELDTLAASSNGQFTVTYSLTQADEDND 191
                  6667788888888877666665444444401113444568899996666551577889999853333777788876.5777772258899999999999999*****************************************************************999998887765 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.7e-06    0.0075     104     172 ..     122     193 ..     111     198 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.7e-06
    TIGR02911 104 vvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkekin....lvltldeaeeddkyk 172
                   +aggtg+ap        a   +   +l l+   k++edil+ke+l++   + n    ++ +l +a+ed+  +
  MMETSP1174-20130828|23642_1 122 FIAGGTGIAPFLQDG-ADASAGDSTTSLRLLYVNKKEEDILMKEELDTLAASSNgqftVTYSLTQADEDNDDD 193
                  68********74332.23455677899*******************998654442211455567777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|23644_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 181.49
//
Query:       MMETSP1174-20130828|23645_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 996.87
//
Query:       MMETSP1174-20130828|23649_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.22s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1174-20130828|23654_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.21s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|23651_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 995.92
//
Query:       MMETSP1174-20130828|23653_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1917.97
//
Query:       MMETSP1174-20130828|23662_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-08   30.7   0.0    8.5e-08   30.1   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
    6.9e-06   23.5   0.0    1.2e-05   22.8   0.0    1.3  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.1e-11   8.5e-08      11      72 ..      57     124 ..      48     184 .. 0.73

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 4.1e-11
    TIGR00586  11 iirnen..neifitrraad..adlanklefPGGkieaGetpeqavvrelqeevgitaqh..felfekl 72 
                  +  nen   e+++ rra +   + ++ +  PGGk eaGe   +a vre +eevg+ +    f+l+ +l
  MMETSP1174-20130828|23662_1  57 LRLNENaaTELLLIRRADNpqDKWSGDIALPGGKREAGESDLEAAVRETREEVGLDVIGggFDLLGQL 124
                  334554227999****986326799*****************************98753115555555 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.6e-09   1.2e-05      47      74 ..      84     111 ..      77     129 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 5.6e-09
    TIGR02705  47 lefPGGkveegetskeaaiRevleetGa 74 
                  +  PGGk+e ge+  eaa+Re  ee G 
  MMETSP1174-20130828|23662_1  84 IALPGGKREAGESDLEAAVRETREEVGL 111
                  568**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1328.41
//
Query:       MMETSP1174-20130828|23666_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1174-20130828|23664_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 1765.35
//
Query:       MMETSP1174-20130828|23668_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-05   20.2   0.0    0.00015   18.8   0.0    1.6  2  TIGR00225 prc: C-terminal processing peptidase
  ------ inclusion threshold ------
      0.023   11.4   0.0      0.031   11.0   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.1e-08   0.00015      62     105 ..      12      69 ..       1      73 [. 0.74
   2 ?   -1.2   0.0     0.084   1.7e+02      23      37 ..      97     111 ..      86     124 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.1e-08
    TIGR00225  62 d.......eivivsplegsPAekagikpgDkIikvdgk.......svagmelddavel 105
                  +       ++++ s ++g+PAe agi+p+D + k +++       +++   ld +v+l
  MMETSP1174-20130828|23668_1  12 KngklgegTLIVESTVRGGPAEAAGIRPNDLLHKANDTslfkfkgETDCSYLDRVVQL 69 
                  25666666999*************************9966666666666666666665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.084
    TIGR00225  23 laslndpytrylske 37 
                  l +   pyt+y++++
  MMETSP1174-20130828|23668_1  97 LPQAGVPYTTYMNRN 111
                  5566679*****976 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.5e-05     0.031     259     294 ..      18      54 ..       4      61 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.5e-05
    TIGR02037 259 kGal.vaevlkgspAekaGlkaGDvilkvngkkiksa 294
                  +G l v + ++g+pAe aG++  D++ k n+ ++ ++
  MMETSP1174-20130828|23668_1  18 EGTLiVESTVRGGPAEAAGIRPNDLLHKANDTSLFKF 54 
                  4554167899********************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1174-20130828|23665_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.61
# Mc/sec: 603.69
//
Query:       MMETSP1174-20130828|23670_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|23669_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1174-20130828|23672_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16   10.1   5.5      0.097   10.8   0.6    2.7  2  TIGR01805 CM_mono_grmpos: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR01805  CM_mono_grmpos: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.039   1.6e+02       4      31 ..      67      94 ..      65     153 .. 0.60
   2 ?   10.8   0.6   2.4e-05     0.097      19      63 ..     226     270 ..     216     276 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.039
    TIGR01805  4 iRkkideiDdklvkLleeRlelvkevaa 31
                 iRk+i+ i +  +  l+ +l+l k +a+
  MMETSP1174-20130828|23672_1 67 IRKEIESILKAKLAGLRGKLQLWKSMAE 94
                 6666666666655555555555555544 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.4e-05
    TIGR01805  19 leeRlelvkevaalKkkngievfDskREqkvldkvlkrvenkeYe 63 
                   e+R  +vk  aa+K k + e  D +RE k+ d++++ + +k  +
  MMETSP1174-20130828|23672_1 226 AEKRQLMVKSTAAVKIKKSAERTDDERELKLADRMTQPLPEKTDD 270
                  4889999****************************9999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1230.60
//
Query:       MMETSP1174-20130828|23673_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1174-20130828|23674_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1090.85
//
Query:       MMETSP1174-20130828|23676_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|23678_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 380.13
//
Query:       MMETSP1174-20130828|23675_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1726.28
//
Query:       MMETSP1174-20130828|23680_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 602.00
//
Query:       MMETSP1174-20130828|23681_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 470.57
//
Query:       MMETSP1174-20130828|23687_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 697.66
//
Query:       MMETSP1174-20130828|23686_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1174-20130828|23690_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 635.50
//
Query:       MMETSP1174-20130828|23694_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|23688_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082   11.0   2.4        1.6    6.9   0.1    2.6  2  TIGR01446 DnaD_dom: DnaD domain protein


Domain annotation for each model (and alignments):
>> TIGR01446  DnaD_dom: DnaD domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1    0.0051        21      12      45 ..     218     250 ..     213     259 .. 0.84
   2 ?    6.9   0.1   0.00038       1.6      15      50 ..     333     369 ..     324     373 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0051
    TIGR01446  12 tlspfemedlkkwlddfgnslelikeAlkiAven 45 
                  + ++ +me+l+  l+   ++ +l keA++ A++n
  MMETSP1174-20130828|23688_1 218 MNTKQQMEELESILQRSAFPSDL-KEAIQFASKN 250
                  567899*************8887.9999999965 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00038
    TIGR01446  15 pfemedlkkwlddfgns.lelikeAlkiAvennkrny 50 
                  +++me  +k  d  +++ +el +eA+++A++ n +n+
  MMETSP1174-20130828|23688_1 333 QKQMEVREKLRDAYKKKdIELLHEAVDEASSTNNSNL 369
                  5566655555555554459************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 1162.63
//
Query:       MMETSP1174-20130828|23695_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|23697_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|23702_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 434.29
//
Query:       MMETSP1174-20130828|23700_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|23704_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1174-20130828|23708_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1174-20130828|23711_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.2   0.1      0.024   11.9   0.0    1.1  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
      0.024   11.5   0.2      0.027   11.3   0.1    1.0  1  TIGR00814 stp: serine transporter


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05     0.024     170     204 ..      46      80 ..      32      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.2e-05
    TIGR00128 170 tkkevekaeallkeagakralpLevsgafHselmk 204
                   ++  e+a++++++ +ak ++pL v +a  s+lm+
  MMETSP1174-20130828|23711_1  46 RVQTAEAAQNMARAINAKSIIPLCVTVAVSSSLMN 80 
                  345567788888899*******************8 PP

>> TIGR00814  stp: serine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.3e-05     0.027     276     350 ..       5      79 ..       2      84 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
    TIGR00814 276 naalikiaavivaivAilksFlGhYlGakEgleglvlkl.lklkkkkvnekklnraiaiflllttwivvvinpsil 350
                  +  +++++ +i a +    sF   Y+G + ++eg ++    + ++++   +++ rai +  ++ + + v + +s++
  MMETSP1174-20130828|23711_1   5 DYEFVEVTVPIFAAFSAGLSFASEYVGRRTTAEGQIVGNnVRVQTAEAA-QNMARAINAKSIIPLCVTVAVSSSLM 79 
                  567899999***********************99665443666655555.55666666665555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1174-20130828|23709_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   37.0   5.0    2.3e-10   37.0   3.5    2.6  2  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
    3.3e-06   22.9   8.3    5.1e-06   22.2   5.8    1.2  1  TIGR00918 2A060602: transmembrane receptor Patched
    4.7e-05   19.7  12.7    0.00011   18.4   7.6    1.9  2  TIGR00833 actII: transport protein
     0.0032   12.9  19.3      0.012   11.1   9.7    2.8  3  TIGR00917 2A060601: Niemann-Pick C type protein family
  ------ inclusion threshold ------
       0.53    6.0   9.5        0.6    5.8   5.6    1.6  2  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.7     0.028        23     326     413 ..      86     183 ..       3     192 .. 0.53
   2 !   37.0   3.5   2.8e-13   2.3e-10     206     347 ..     437     580 ..     401     618 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.028
    TIGR00921 326 lGlilaylltllvlpallklideirrkvmkkkk......akdlereeiag...ekseiekalskv.skltvrhpvvilvvaliivglgl.Yaaakikle 413
                  +G+ l   +tl+   a + l+ e +  v+ k +      a d+ere ++g   e+ + +  ++kv + +++ +   i vva++ v+++l Y+ ++i+  
  MMETSP1174-20130828|23709_1  86 AGVALVSSSTLIGEIAAADLERESN-GVTLKEDligriaAEDRERESTGGtlkEEEKSDYFVEKVyLPFIKAKVCDIKVVAIACVLALLaYGISNIPHA 183
                  4555555555555555555555444.2222222555554567777777774422222222233331345555555666666555544333777777665 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 2.8e-13
    TIGR00921 206 vlvLllvfksvvrkllpLvivlfgVvvvlGlm.glLGiPlsaatlaalplliGlgIdYgiqltnRyeEErdkg.kakeeAvveavkrtgkAvliallttvlGFlalllsvlpmlkelgvllvlGlilaylltllvlpallklid 347
                   +vLll   + v  +  L+ v+f Vv vlG++  ++G  l +    a+ ++iG ++dY+++l   y    ++g ++ke     a +     v+  ++tt++  + ++  ++    +++ l+v+ +i +yl +l++   ll+ i 
  MMETSP1174-20130828|23709_1 437 FIVLLLSTGNYVVSIFALISVIFIVVGVLGFIaSVMGWDLGVSESVAGIIIIGFSVDYTVHLGHMYIHAEQEGhHDKERRFDYAARTMVSTVIAGAITTAVSGAFMFSCQMTFFLKMATLIVATIIFSYLYSLFFFMGLLYTIG 580
                  5799999999999*****************983589***************************999888888856677777777777777777788999999999***********************************9884 PP

>> TIGR00918  2A060602: transmembrane receptor Patched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   5.8   6.2e-09   5.1e-06     975    1123 ..     430     585 ..     421     609 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 6.2e-09
    TIGR00918  975 lvctllvvallllnpwtagliv...lvlalmtvelfGim.gllGiklsavpvviliasvGigveftvhvalafltai..G..drnrravlalehslapvldGalstllgvlmlagsefdfivryffavlavlt.vlGvlnglvllpvllsllGpepev 1123
                   l+c  +   +lll++   ++ +   +++  ++v ++G + +++G  l     v  i+ +G  v +tvh+   ++ a   G  d++rr  +a + +++ v+ Ga++t ++   + + ++ f ++   a l+v t ++  l +l ++  ll  +Gp  + 
  MMETSP1174-20130828|23709_1  430 LICFPVSFIVLLLSTGNYVVSIfalISVIFIVVGVLGFIaSVMGWDLGVSESVAGIIIIGFSVDYTVHLGHMYIHAEqeGhhDKERRFDYAARTMVSTVIAGAITTAVSGAFMFSCQMTFFLKM--ATLIVATiIFSYLYSLFFFMGLLYTIGPSGQT 585 
                   5555555566777665555544001445555566666442467999999999999****************99987522333899*********************996554455678888875..4444444156899***************8764 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.041        33     303     341 ..       9      47 ..       4      63 .. 0.83
   2 !   18.4   7.6   1.3e-07   0.00011     187     321 ..     437     568 ..     430     578 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.041
    TIGR00833 303 fktlgvalavgvlvallaaltllPAllvlesRakllkpk 341
                  ++t g   a ++ +  l  +tl+P  ++l+ +   ++p+
  MMETSP1174-20130828|23709_1   9 ISTFGYFAATAIVMNYLFTITLTPSAVILAHKYFCWQPN 47 
                  6788999999********************999888883 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 1.3e-07
    TIGR00833 187 liiLllvYrslitmlvpLvsvgvsvvvakgivslLaetgligvsaqavvlltalvigagtdYavfligRY.heerrkgekkeeAlaealrevgkailgsaltvavaflaLslarlesfktlgvalavgvlvallaa 321
                   i+Lll   + +  +  L+sv++ vv   g+++      ++gvs   +++   ++ig  +dY v+l   Y h e   +++ke  +  a r +   +++ a+t+av+   +   ++  f +++ +++  +  + l  
  MMETSP1174-20130828|23709_1 437 FIVLLLSTGNYVVSIFALISVIFIVVGVLGFIASVMGW-DLGVSESVAGI---IIIGFSVDYTVHLGHMYiHAEQEGHHDKERRFDYAARTMVSTVIAGAITTAVSGAFMFSCQMTFFLKMATLIVATIIFSYLYS 568
                  5889999999****************999999876554.45678777777...9****************44455567899999*******99999999*****999999999*****999999999988887765 PP

>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.8   0.1    0.0089       7.3     716     747 ..       7      37 ..       1      44 [. 0.81
   2 ?    1.3   0.0     0.012        10     758     818 ..     117     178 ..      93     187 .. 0.73
   3 !   11.1   9.7   1.4e-05     0.012    1055    1168 ..     430     544 ..     423     580 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0089
    TIGR00917 716 mPavrafslyaalavliDfLLqitafvaLlvl 747
                  mP + +f ++aa a+++++L+ it   + ++l
  MMETSP1174-20130828|23709_1   7 MP-ISTFGYFAATAIVMNYLFTITLTPSAVIL 37 
                  66.789*****************977666555 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.012
    TIGR00917 758 DilpcikgeksdisaekssvqkkeglLtrffkevyaPlLlkkiv..kivvivifvglllagia 818
                  D++  i++e+ +   +++ + k+e     f+++vy P++  k+   k+v i+  ++ll  gi+
  MMETSP1174-20130828|23709_1 117 DLIGRIAAEDRE-RESTGGTLKEEEKSDYFVEKVYLPFIKAKVCdiKVVAIACVLALLAYGIS 178
                  556666666664.5566666666777778899********99961155555667778887775 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 1.4e-05
    TIGR00917 1055 gislgaifvvtlvllglnvlsavvvvisvgmivvnllgim.alwnislnavsvvnlvmavgisvefcshiaaafats...kkvsrderakealaemGssvfsGitltklvGvvvLafs 1168
                   +i++   f+v l+    n  +++  +isv +ivv +lg +  + +  l     v  ++ +g+sv++ +h+ + ++ +    + +++ r ++a   m s v++G + t + G  +  fs
  MMETSP1174-20130828|23709_1  430 LICFPVSFIVLLLS-TGNYVVSIFALISVIFIVVGVLGFIaSVMGWDLGVSESVAGIIIIGFSVDYTVHLGHMYIHAeqeGHHDKERRFDYAARTMVSTVIAGAITTAVSGAFM--FS 544 
                   56566668884444.46777777788888888888877541455566644556788899***************9995434789999********************9999754..44 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.16   1.3e+02     394     426 ..       9      41 ..       8      60 .. 0.84
   2 ?    5.8   5.6   0.00073       0.6     276     384 ..     430     541 ..     421     604 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.16
    TIGR03480 394 vseLGlIagvgmliallvtltllpAlLkllkps 426
                  +s  G  a++++++  l+t+tl p+ + l +++
  MMETSP1174-20130828|23709_1   9 ISTFGYFAATAIVMNYLFTITLTPSAVILAHKY 41 
                  7889********************988887665 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00073
    TIGR03480 276 llslvlvlvlLllalrslrlvlavlvtlivgLiltaafaalavG.slnliSvaFavlfiGlgvdfaiqfslryreelerge.eeeeAlseaakevgaalllaalatAig.ff 384
                  l+ + +  ++Lll+     + + +l+++i  ++   +f a ++G  l +   +  ++ iG +vd+ ++++  y +  ++g+ ++e+    aa+ + + ++ +a++tA++  f
  MMETSP1174-20130828|23709_1 430 LICFPVSFIVLLLSTGNYVVSIFALISVIFIVVGVLGFIASVMGwDLGVSESVAGIIIIGFSVDYTVHLGHMYIHAEQEGHhDKERRFDYAARTMVSTVIAGAITTAVSgAF 541
                  5666677788888888877777778888888888889988888834554433335888***************887777761556899*******************96322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.62
# Mc/sec: 1409.30
//
Query:       MMETSP1174-20130828|23716_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-05   19.0   1.4       0.17    7.7   0.4    3.4  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0   0.00083       3.4     177     205 ..      25      53 ..      18      59 .. 0.71
   2 !    4.8   0.0   0.00032       1.3     130     156 ..      58      84 ..      54      93 .. 0.82
   3 !    7.7   0.4   4.2e-05      0.17      82     156 ..     193     278 ..     117     290 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.00083
    TIGR00870 177 hgespLnlaaclasesivsllsedpAdil 205
                  h    L+ aac + +++v++l+ ++Ad++
  MMETSP1174-20130828|23716_1  25 HDHTALSEAACNGHADLVAFLVAQGADPN 53 
                  55556777777777777777777777766 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.00032
    TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                  +g ++l  A+ +   e+v+lLle+ga+
  MMETSP1174-20130828|23716_1  58 VGRSPLFRAAYNGHNEVVRLLLESGAD 84 
                  578899999999999999999999987 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 4.2e-05
    TIGR00870  82 evGdalLhaisk.elvdaveailllllkaarksltls..........elandestseftkgitalilAihkqnyeivklLlekgas 156
                  + G +lLh++++ +  ++ +++l++++ ++ ++++ +           + + +  ++  kg     +A+ ++n  ++klLl+ ga+
  MMETSP1174-20130828|23716_1 193 NRGCTLLHLAVQhNHLEIANMLLTHNNPKHDDEEEEEedrdmseaerRVYKSTVNGRDGKGWNTAAVAVFHDNAGMLKLLLDHGAN 278
                  45667777665414456666667776666655555446666666654444444445555666666677777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1012.94
//
Query:       MMETSP1174-20130828|23714_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 2011.83
//
Query:       MMETSP1174-20130828|23713_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.56
# Mc/sec: 1618.60
//
Query:       MMETSP1174-20130828|23721_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   15.8   0.0      0.005   15.3   0.0    1.4  1  TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family


Domain annotation for each model (and alignments):
>> TIGR02419  C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-06     0.005      12      50 ..      27      62 ..      18      73 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-06
    TIGR02419 12 elleaalaaarakkrveaasllvCeeCgepIPeaRreal 50
                 e   ++l+++ +  + ++   l+C+ C+ +IP+  + a+
  MMETSP1174-20130828|23721_1 27 E--SQMLSNNEDDYDNWIVQ-LLCRFCDREIPTSKLDAA 62
                 4..68888888888666666.8***********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1174-20130828|23720_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2501.65
//
Query:       MMETSP1174-20130828|23722_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 872.59
//
Query:       MMETSP1174-20130828|23719_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091   10.6   1.0       0.17    9.7   0.3    1.8  2  TIGR02190 GlrX-dom: glutaredoxin-family domain


Domain annotation for each model (and alignments):
>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   4.2e-05      0.17      10      22 ..     141     153 ..     129     164 .. 0.81
   2 ?   -2.9   0.0      0.36   1.5e+03      35      49 ..     332     346 ..     323     348 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.2e-05
    TIGR02190  10 vsvftkpGCPfCa 22 
                  + ++ kpGCPfC 
  MMETSP1174-20130828|23719_1 141 ICLVRKPGCPFCW 153
                  57899*******6 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.36
    TIGR02190  35 feeivLgkdirtrsl 49 
                   +ei++g+d+   sl
  MMETSP1174-20130828|23719_1 332 LVEITIGNDALQESL 346
                  589999999977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       403  (0.0982448); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1065.87
//
Query:       MMETSP1174-20130828|23724_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 338.58
//
Query:       MMETSP1174-20130828|23729_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.62
# Mc/sec: 138.38
//
Query:       MMETSP1174-20130828|23727_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.43
# Mc/sec: 2167.08
//
Query:       MMETSP1174-20130828|23732_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|23728_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.46
# Mc/sec: 2192.17
//
Query:       MMETSP1174-20130828|23735_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   12.3  21.3     0.0066   12.0  14.8    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.014   10.9  19.7      0.018   10.6  13.7    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.7    4.2  20.0        3.5    3.8  13.8    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        5.1    5.0  10.4        0.6    7.9   1.4    2.5  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0  14.8   6.4e-06    0.0066     352     504 ..      33     187 ..      15     210 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.4e-06
    TIGR02169 352 ereklkeelkelkeeleelraeleevdkeaa.elreelkelkeklekl.keelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakase 504
                  ++ek+++  +  +++ + ++++l+e++ +++ +  e+++ ++  ++   k+ +++l++ +d  +ee +++++++++   el++iee++a++e +   + ++ +  + +++q+ke  +++e++    k+e +++ +++  le el++   +a+ ++
  MMETSP1174-20130828|23735_1  33 DKEKMQAMKATTRHKKKVKESKLKELEDSNNgNNGEKSNRMQDCINPFcKDLKDKLQKREDGIIEEREKIQKQIQDRSDELNSIEESVADMEMRSRIATDRARGIKDEIQQNKELADELEARTASMKSENQEMGHKIMTLELELQKQLFEARKAQ 187
                  55555555555555555555555555444430333444444555554313444556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666665544443333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  13.7   1.8e-05     0.018     747     891 ..      44     190 ..      20     212 .. 0.31

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.8e-05
    TIGR02168 747 leerlaqlekeleeleeereeleeeleeaeeel..keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleeal 891
                   +++ + +e++l+ele++ + ++ e ++  +      +++ +++l+++ + + ee +++++++++ ++el++ +e++a+ e r +  +++++ +++e+++ +e ++ele++ +s+++e +e+  ++ +le el++ l e +++++++
  MMETSP1174-20130828|23735_1  44 TRHKKKVKESKLKELEDSNNGNNGEKSNRMQDCinPFCKDLKDKLQKREDGIIEEREKIQKQIQDRSDELNSIEESVADMEMRSRIATDRARGIKDEIQQNKELADELEARTASMKSENQEMGHKIMTLELELQKQLFEARKAQADM 190
                  111111111222222222222111111111111111122222222222222233333333333333333333333333333333333333333333333333333333333333333333333333333333333333322222222 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  13.8    0.0034       3.5      35     192 ..      37     194 ..      18     213 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0034
    TIGR03319  35 kkiieeakkeaeakkkealleakeevkklreelekelkerrke.....lqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqe.eAkellleeveeelkeeaaklikeieeeakeeadkkakeilalai 192
                   + ++ +++  ++ k+++l e    ++   +  + e ++r ++      ++l+++l+++e+ + ++ ek++k+ ++ + + +++ee  +++e +++ +++  +  k+e+++  +l+ e eA++  +++ ++e+ +++++l  e ++++ e  + +a   +++a+
  MMETSP1174-20130828|23735_1  37 MQAMKATTRHKKKVKESKLKE----LEDSNNGNNGEKSNRMQDcinpfCKDLKDKLQKREDGIIEEREKIQKQIQDRSDELNSIEESVADMEMRSRIATDRARGIKDEIQQNKELADElEARTASMKSENQEMGHKIMTLELELQKQLFEARKAQAD--MIQAM 194
                  222222223333333333333....33333333333333333311112467788888888888888888888888888888888888888888888889999999999999999998779***************9999988888888776555544..44444 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.4   0.00058       0.6      30      64 ..      96     130 ..      89     132 .. 0.94
   2 ?    2.6   0.6     0.028        28      23      58 ..     131     166 ..     129     169 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00058
    TIGR02209  30 nselqklqaeieklqkewndLqlEvaelsrheRie 64 
                  + e++k+q++i++ + e n+ +  va+  +++Ri+
  MMETSP1174-20130828|23735_1  96 IEEREKIQKQIQDRSDELNSIEESVADMEMRSRIA 130
                  789*******************************7 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.028
    TIGR02209  23 qhqtrqlnselqklqaeieklqkewndLqlEvaels 58 
                  + ++r +  e+q+ ++  ++l++ +++++ E +e +
  MMETSP1174-20130828|23735_1 131 TDRARGIKDEIQQNKELADELEARTASMKSENQEMG 166
                  678899999**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1172.37
//
Query:       MMETSP1174-20130828|23736_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.26
# Mc/sec: 2385.96
//
Query:       MMETSP1174-20130828|23739_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 179.99
//
Query:       MMETSP1174-20130828|23737_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1253.90
//
Query:       MMETSP1174-20130828|23738_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1020.72
//
Query:       MMETSP1174-20130828|23740_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 470.21
//
Query:       MMETSP1174-20130828|23742_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.4   0.0       0.02   13.0   0.0    1.2  1  TIGR00251 TIGR00251: TIGR00251 family protein
      0.038   10.0   0.0      0.038   10.0   0.0    1.1  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00251  TIGR00251: TIGR00251 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.7e-06      0.02       3      31 ..      29      56 ..      27      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.7e-06
    TIGR00251  3 eakdgllisievqpkaskesivslneWrk 31
                 e +dg +i+++++pk +ke+i+s  e rk
  MMETSP1174-20130828|23742_1 29 EDEDGEVIRLKINPKKKKEHIPSDAE-RK 56
                 6789*******************988.65 PP

>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   1.8e-05     0.038     717     746 ..      22      50 ..       4      66 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.8e-05
    TIGR00844 717 vdndliiedesgevikrykisphkskrkik 746
                  +   l +ede+gevi r ki+p+k k++i 
  MMETSP1174-20130828|23742_1  22 LPSWLTLEDEDGEVI-RLKINPKKKKEHIP 50 
                  5567899******99.68*****9988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 275.98
//
Query:       MMETSP1174-20130828|23747_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.9   0.0    1.4e-05   21.7   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    6.3e-05   21.0   0.0    9.1e-05   20.4   0.0    1.2  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.7e-09   1.4e-05      26     113 ..      42     131 ..      32     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 6.7e-09
    TIGR02938  26 ilyanaafseitGyakeeviGknes.vlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvln.eaGetthflGmhr 113
                  + ya +a+ +  Gy  ++++G+n + vl+   t   v  ++ + +a k   + +++  +kdg+ +   l v  v + ++G++ ++ Gm  
  MMETSP1174-20130828|23747_1  42 VTYASDAWLKWCGYKMNDILGRNATeVLAGPCTDHIVISQFMDLVAVKGSSEAVVVHYKKDGTPFANRLNVKKVEDrQTGQACFYWGMTE 131
                  569********************7449***********************************************98469*********64 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.4e-08   9.1e-05      27     106 ..      42     122 ..      29     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.4e-08
    TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrv.krkdGseiwvevsvspird.agge 106
                  ++y+++a+ +  GY+  +++Grn++e+++ +  +++   i++  +    ++ se + v ++kdG+ +  +++v+ ++d + g+
  MMETSP1174-20130828|23747_1  42 VTYASDAWLKWCGYKMNDILGRNATEVLAGPCTDHIV--ISQFMDlVAVKGSSEAVVVhYKKDGTPFANRLNVKKVEDrQTGQ 122
                  789***********************99999999988..666555567788888888899*****************876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 729.82
//
Query:       MMETSP1174-20130828|23751_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|23750_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 840.22
//
Query:       MMETSP1174-20130828|23755_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1174-20130828|23754_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1575.87
//
Query:       MMETSP1174-20130828|23759_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 504.49
//
Query:       MMETSP1174-20130828|23761_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-25   85.6   0.3    7.6e-25   85.2   0.2    1.1  1  TIGR01079 rplX_bact: ribosomal protein L24
    3.2e-07   28.6   0.0    5.8e-07   27.8   0.0    1.5  1  TIGR01080 rplX_A_E: ribosomal protein L24
     0.0073   14.2   0.0      0.011   13.6   0.0    1.3  1  TIGR00405 L26e_arch: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.2   5.5e-28   7.6e-25       4     104 .]      42     141 ..      39     141 .. 0.97

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 5.5e-28
    TIGR01079   4 ikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpkeekekeggiiekEapidisnvalvdkktkkatrvgirieedkkkvRvlkksgeii 104
                  i +gD+V vi G  +G++G vl+v++k+++v+Vegvn++ k+ k+k  +e +g  i   a ++ snv l+d+ t+ +trv  r+ ed+ kvRv k+sg ii
  MMETSP1174-20130828|23761_1  42 IVRGDKVAVIDGPCRGQQGVVLAVIRKNKRVVVEGVNMRLKNLKQKYWEE-KGSKIMAPASLHYSNVNLLDPVTGLPTRVSRRYLEDGTKVRVSKRSGAII 141
                  779*******************************************9999.6**********************************************987 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.2e-10   5.8e-07      21      97 ..      13      97 ..       2     111 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 4.2e-10
    TIGR01080 21 kllsapLskeLrekygkr........alpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGtevavpihpsnvm 97
                 k +   L k Lr k++++           + +gdkv ++ G  +G++G vl v +k  r+ vegv+++  + ++ + + + s++m
  MMETSP1174-20130828|23761_1 13 KSMLRALPKFLRPKHKHKpnlthpfkRWTIVRGDKVAVIDGPCRGQQGVVLAVIRKNKRVVVEGVNMRLKNLKQKYWEEKGSKIM 97
                 44444577777777665421111111456889**********************************9988877777776666666 PP

>> TIGR00405  L26e_arch: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.1e-06     0.011      86     123 ..      41      78 ..      22      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.1e-06
    TIGR00405  86 sikkGdvveiisGpfkGerakvirvdeakeevtlelle 123
                   i +Gd+v +i Gp +G++  v  v ++++ v++e ++
  MMETSP1174-20130828|23761_1  41 TIVRGDKVAVIDGPCRGQQGVVLAVIRKNKRVVVEGVN 78 
                  5889*****************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 607.15
//
Query:       MMETSP1174-20130828|23765_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 597.42
//
Query:       MMETSP1174-20130828|23763_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-100  334.3   0.1   8.7e-100  332.0   0.1    1.8  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase
    9.9e-06   22.9   0.2     0.0071   13.6   0.0    2.4  3  TIGR03611 RutD: pyrimidine utilization protein D
    3.1e-05   21.3   0.1    0.00039   17.7   0.1    2.0  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
  ------ inclusion threshold ------
      0.011   13.2   0.0       0.32    8.4   0.0    2.1  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.0   0.1  8.5e-103  8.7e-100       3     350 ..      54     371 ..      52     372 .. 0.95

  Alignments for each domain:
  == domain 1    score: 332.0 bits;  conditional E-value: 8.5e-103
    TIGR01392   3 eeltlesGevlsevevayktyGtlnaerdNavlvcHaltgsahvagkadeedkGWWdellGpgraldtsryfvvclNvlGsckGstgPlsinpetgkpygaefPlvtirDlvkaqkall.dsLgveklaavvGgSlGGmqalewalsype....rvkkivvlatsarasaqaiafnevqrqailsDpeyndGeyaeeeqPekGLalARmlalltYrseesleerfgreakseeslassleeefsvesylryqgkkfverFdAnsYllltkaldthdlargrrdslkealkkikapvlvvgiesDllftleeqeelakalkaakleyaeieseeGHDaFllekekveelirefl 350
                   e++le G+ l + +v+y+t+G+    ++ +++v Haltg+a ++         WW e++G+g+ald s+ f++c+N lGsc+GstgP+s  ++tg+ yg +fPlv++rD+v+ + +ll d+Lg++++ +v+GgSlGGmqalew l  pe    +v+++vv+a +a+++a++i+++e+qrqa++          ++    e GL++AR++a+++Yrs  +++++fgre++++         +f+v syl+yqg+kf++rFd  sY ++t+++dthd++rg r+++++al+++++++l++gi+sD+l++leeq+ela+ +++a+    ei ++eGHD+Flle ++v ++i+ f+
  MMETSP1174-20130828|23763_1  54 GEFKLEFGKSLFRPQVRYRTWGD---PKNPTLVVAHALTGNAGID--------TWWGEIMGEGKALDSSENFIICMNILGSCYGSTGPMSRCEKTGEVYGDDFPLVSVRDTVRLHMHLLhDHLGIRRVSTVIGGSLGGMQALEWLLCAPEqklvTVDSAVVIACGAEHNAWQIGISETQRQALRL---------HK----EDGLRIARQIAMIAYRSPVAYRNKFGRERTTD--------GRFQVASYLEYQGRKFLSRFDPTSYYAITEQMDTHDVGRG-RGGIEAALSSLSQRILIMGISSDVLYPLEEQQELARLIPNAGFF--EIVTDEGHDGFLLEYDQVGSAISTFI 371
                  589*******************7...56799***********999........4*************************************************************987758****************************94444599*************************975.........33....57************************876655........79**************************************.9***************************************9977..**********************9886 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       1.6   1.6e+03      84      96 ..      83      95 ..      82      96 .. 0.88
   2 !    7.0   0.0   0.00071      0.73      69     116 ..     157     209 ..     134     229 .. 0.78
   3 !   13.6   0.0   6.9e-06    0.0071     190     254 ..     305     370 ..     300     374 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.6
    TIGR03611 84 vvGhalGgligle 96
                 vv hal g++g++
  MMETSP1174-20130828|23763_1 83 VVAHALTGNAGID 95
                 799******9997 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00071
    TIGR03611  69 dvlelldaldieka.hvvGhalGgliglelalrkpe....rlaklvlinaWsk 116
                  +++ l d+l+i+++  v+G +lGg+ +le  l  pe    ++++ v+i   ++
  MMETSP1174-20130828|23763_1 157 HMHLLHDHLGIRRVsTVIGGSLGGMQALEWLLCAPEqklvTVDSAVVIACGAE 209
                  5677889*****983589**************999966656777788755444 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 6.9e-06
    TIGR03611 190 vdarldriklpvlliaakDDlLvPytqsseLaekLPdael.klleyGghasnvtdpetfnellldf 254
                  ++a+l+++++++l++  + D+L P+ + +eLa+ +P+a + +++   gh   + + +++ +++  f
  MMETSP1174-20130828|23763_1 305 IEAALSSLSQRILIMGISSDVLYPLEEQQELARLIPNAGFfEIVTDEGHDGFLLEYDQVGSAISTF 370
                  7899**********************************8625666677776666666666666555 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.8e-07   0.00039      62     232 ..     150     353 ..     144     371 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.8e-07
    TIGR02427  62 iedladdvla.llDalgieka.avcGlSlGGliaqaLaarrpdr..v...ealvlsntaa....kigtaesWeaRiaavraeGlaaladavlerwFtp.....afreaepa....elelv.....rnmlveqppegYaatcaAirdadl.......rerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeiee.aaH 232
                  + d ++  +  l D+lgi+++ +v+G SlGG+ a+   + +p++  v   +a+v+++ a+    +ig +e+  + ++  +++Gl   ++ ++  + +p     +f +++++    +++ +     r+ l + +p +Y a ++ + + d+        ++l++++  +l++  + D+  P e+ +e+a l+p+a f ei    +H
  MMETSP1174-20130828|23763_1 150 VRDTVRLHMHlLHDHLGIRRVsTVIGGSLGGMQALEWLLCAPEQklVtvdSAVVIACGAEhnawQIGISETQRQALRLHKEDGLRIARQIAMIAYRSPvayrnKFGRERTTdgrfQVASYleyqgRKFLSRFDPTSYYAITEQMDTHDVgrgrggiEAALSSLSQRILIMGISSDVLYPLEEQQELARLIPNAGFFEIVTdEGH 353
                  5555555444156*****9963689********985444444322243334677777665233369999999999999999**8887777776665442111144333322111122222222226789999*************99982221111344555555667777799*******************99887532566 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00031      0.32      67     112 ..     171     217 ..     163     252 .. 0.77
   2 ?    2.7   0.0     0.017        18     183     244 ..     308     370 ..     302     371 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00031
    TIGR01738  67 aiwlGWsLGGLvalhlalthpdkvrsLvlvass...pkfaaredwpegi 112
                  + ++G sLGG+ al+  l  p+  ++Lv+v s+   ++ a ++ w+ gi
  MMETSP1174-20130828|23763_1 171 STVIGGSLGGMQALEWLLCAPE--QKLVTVDSAvviACGAEHNAWQIGI 217
                  5689******************..9*****9972224445556666555 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.017
    TIGR01738 183 alqkisvPvLrlyGqkDalvPakvvealdklapqsell.vlekaahaPflshaeafaallref 244
                  al ++s  +L +    D l P +  ++l +l+p++  + ++++ +h  fl + +++  ++  f
  MMETSP1174-20130828|23763_1 308 ALSSLSQRILIMGISSDVLYPLEEQQELARLIPNAGFFeIVTDEGHDGFLLEYDQVGSAISTF 370
                  5667777777777789*****************88877478999******9999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.50
# Mc/sec: 1026.88
//
Query:       MMETSP1174-20130828|23764_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   21.7   0.0    4.1e-05   21.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    7.2e-05   18.6   0.1    9.5e-05   18.2   0.1    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     2e-08   4.1e-05      81     139 ..     244     308 ..     225     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2e-08
    TIGR03724  81 gkklkdlleekel......ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkks 139
                  ++ l ++l+e++        ++++v  ++  lH++++vh D+ ++Ni +k+d+  l D+GL +  
  MMETSP1174-20130828|23764_1 244 ERSLDNVLQETRIpfedifTMTRQVLLALEVLHRNNLVHLDIKPANIFIKHDRYKLGDLGLVSAA 308
                  45667777776656776778889999999********************************7764 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   4.6e-08   9.5e-05      30     114 ..     213     294 ..     183     319 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.6e-08
    TIGR03903  30 alCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsa 114
                   lC      niv+   +   ed +l+   e+ e r l +vL+ +  +p ++   +  qvL al   h++ +vh D+kP ni +  
  MMETSP1174-20130828|23764_1 213 HLCTMEDAANIVRY-HQAWIEDSRLYIQMELCE-RSLDNVLQ-ETRIPFEDIFTMTRQVLLALEVLHRNNLVHLDIKPANIFIKH 294
                  56777777888886.566788999999999987.99***998.5689**********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.54
# Mc/sec: 1112.13
//
Query:       MMETSP1174-20130828|23766_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|23767_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 937.12
//
Query:       MMETSP1174-20130828|23768_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 579.05
//
Query:       MMETSP1174-20130828|23769_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1041.64
//
Query:       MMETSP1174-20130828|23772_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   18.4   0.0    0.00012   18.3   0.0    1.0  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.9e-08   0.00012     551     584 ..      22      55 ..       6      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.9e-08
    TIGR00578 551 lgkltvsvlkdickaeGlrsgskkqelldalkkh 584
                  l  l v+ lk++c+++Gl+ g+ k e+l  l+ h
  MMETSP1174-20130828|23772_1  22 LDGLKVPELKELCRTYGLQVGGNKVEILARLQDH 55 
                  56799***********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 267.86
//
Query:       MMETSP1174-20130828|23771_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 499.08
//
Query:       MMETSP1174-20130828|23775_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 218.82
//
Query:       MMETSP1174-20130828|23779_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 517.80
//
Query:       MMETSP1174-20130828|23774_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.78
# Mc/sec: 983.15
//
Query:       MMETSP1174-20130828|23780_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 554.35
//
Query:       MMETSP1174-20130828|23777_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-22   76.3   2.6    8.7e-22   76.0   1.8    1.1  1  TIGR00158 L9: ribosomal protein L9


Domain annotation for each model (and alignments):
>> TIGR00158  L9: ribosomal protein L9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   1.8   2.1e-25   8.7e-22       2     146 ..      57     206 ..      56     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 2.1e-25
    TIGR00158   2 kviLkedvknlGkkgdvveVkdGyarnfLipkglavlatkknieklearrkkkeekeaae.kaaaaklkevlelvtltiskksgdeg...klfgsittkeiadavkk.aglkldkkeielkdgviktlGeyevelklheevvavlkvevk 146
                  +++L +dv++ G k d++ Vk G+  n+L+p++ avlatk++++k++ + ++  ++ea+  ++a+  + +++++ +++i+kk++ ++   k++gs+   e++ a+++ a lkl+  +++++++ +  lG+ +  + + +++ a l+++++
  MMETSP1174-20130828|23777_1  57 QIVLTKDVTDVGVKNDIKYVKTGFYLNYLLPRKEAVLATKEVVDKVNMENADYVANEAKLdEEAKVVVSKLEAIKKFVIQKKADSAEagsKIYGSVSIPEVISAIEEaADLKLNSPKMSMPKDKMNLLGDVDFVVTVRPNIAANLELSIA 206
                  79**************************************************999998885666777777888999******875432248***************999************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 894.12
//
Query:       MMETSP1174-20130828|23782_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|23781_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|23778_1  [L=1311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-14   51.0   0.1    5.1e-12   43.4   0.1    2.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.2e-09   36.1   0.2    4.9e-08   30.8   0.2    2.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.9e-08   31.9   0.0    4.8e-08   30.6   0.0    1.6  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.9e-06   24.3   0.0      3e-06   23.7   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.3e-05   22.8   0.1    3.5e-05   21.4   0.0    1.7  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    0.00038   17.8   0.0     0.0046   14.3   0.0    2.2  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
     0.0079   13.4   0.0      0.017   12.3   0.0    1.5  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
  ------ inclusion threshold ------
      0.027   11.7   0.0       0.13    9.5   0.0    1.9  2  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1     1e-14   5.1e-12      45     185 ..    1057    1201 ..     989    1210 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1e-14
    TIGR01963   45 leeaggevlalkadvtkeeeiadlieavaaefgsld....iLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrt 185 
                    ++ag  +  +++d+t+ +++ ++ +++ +  +  d    ++vnnA +      e  p+++f++ ++vn  +a+++++a lp+++++   r++n +s+ g++as f sa  ++  ++  l   l  Ev + g+++  + Pg+++t
  MMETSP1174-20130828|23778_1 1057 DTDAGRFIHIIVYDITSDRSVVETEKKIDEYCRVHDlvlkVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFLPMLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDT 1201
                   3455556677899****9999999888888777666433378*****************************************************************************************************99 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   9.5e-11   4.9e-08      44     183 ..    1058    1201 ..     992    1210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 9.5e-11
    TIGR01830   44 keagvkaaavkldvsdeeevkelveeveeelg....eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfiet 183 
                   ++ag+  ++++ d++++ +v e+ +++ e        ++++vnnA ++  +++  +  + ++e ++vn  g+ +v+ka l  + ++   r++n +s  g+  +   +   +s a +  l + l +E+++ +++v  + PGfi+t
  MMETSP1174-20130828|23778_1 1058 TDAGRFIHIIVYDITSDRSVVETEKKIDEYCRvhdlVLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFLPMLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDT 1201
                   346777889999***9999988877777654411235789****************************************9999999**********999998888889999******************************98 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   9.5e-11   4.8e-08       3     207 ..     989    1207 ..     988    1229 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 9.5e-11
    TIGR03971    3 GkvalitGaarGqGraeavrlaaeGadiiaidlc....eplsdvvtyp.aatre...dldetaklvea...lGrkvlarkadvrkleelravv..eegveefGr.....ldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepe 207 
                   G+  +i+Ga  G Gr  a   a++ a+  +        e  ++   ++ + t++   +l++  +++ +   +Gr + + + d+      r+vv  e+ ++e+ r     l vvv+na + +yg a  l  + +++ ++vn+ G+ ++ ka +P ++ r+    ++  +s+ g++a  +++   ++   +  l + l +e++++g++v  + P  +dt   +++
  MMETSP1174-20130828|23778_1  989 GHCCFIAGAGSGVGREIAASYANQYAEHSSRKFGfykeEATNRSQVFCgVRTEAegvELQRYFSAISGdtdAGRFIHIIVYDI---TSDRSVVetEKKIDEYCRvhdlvLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFLP-MLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDTLAASDN 1207
                   66677777777777777777777777665543321111233333334412333322256666666654111455555555555...44455551135677777733333579*****************************************.67788899999***************************************************9776644 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   5.9e-09     3e-06     415     596 ..     990    1196 ..     981    1204 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 5.9e-09
    TIGR02632  415 rvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava........................lkldvtdeeavkaa...faevalayGG.vdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaP 596 
                   +  +++G++sG+Gre+a  ++++ a          + ea+++  v  f   ++ a                        ++ d+t++ +v ++   ++e ++ +   + +vvnna ++     e    ++++ n++++  G   v++ a+  + +++ ++ l+  +s  ++ a+  ++a  ++ aa   l  +l  e +++g++v  + P
  MMETSP1174-20130828|23778_1  990 HCCFIAGAGSGVGREIAASYANQYAEHSSRKFGFYKEEATNRSQV--FCGVRTEAegvelqryfsaisgdtdagrfihiIVYDITSDRSVVETekkIDEYCRVHDLvLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSK-AFLPMLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMP 1196
                   5689*********************99888777666666655444..3333333344558999***************999******9998661114444444443146788999988777777777***************99986.7888888899**********************************************987776 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   1.6e+03       4      22 ..     993    1011 ..     991    1019 .. 0.83
   2 !   21.4   0.0   6.8e-08   3.5e-05      78     185 ..    1094    1201 ..    1052    1212 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.1
    TIGR01829    4 lvtGglgGiGtaickrlak 22  
                   +++G+  G+G++i+   a+
  MMETSP1174-20130828|23778_1  993 FIAGAGSGVGREIAASYAN 1011
                   7999********9987665 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 6.8e-08
    TIGR01829   78 pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiat 185 
                    + v+vnna +    + + +  ++++e +++n+ + + v +  +  ++ ++  r++n  s  G++     +   ++ a +  +  +l +e++++gv v  + PG+i+t
  MMETSP1174-20130828|23778_1 1094 VLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFLPMLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDT 1201
                   4689*************************************************************87666666778999***************************99 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11        56       4      30 ..     988    1014 ..     985    1033 .. 0.86
   2 !   14.3   0.0     9e-06    0.0046      50     190 ..    1060    1203 ..    1042    1214 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.11
    TIGR01832    4 eGkvalvtGantGlGqgiavglaeaGa 30  
                    G+  +++Ga +G+G+ ia + a+  a
  MMETSP1174-20130828|23778_1  988 TGHCCFIAGAGSGVGREIAASYANQYA 1014
                   689999**************9998655 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 9e-06
    TIGR01832   50 lGrkflslkadladeeaa...kalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsyta....sksavaGltkllanewakkginvnaiaPGyletnn 190 
                    Gr ++ +  d+++ +++   ++ +de +   +  + ++vnna +     a+ ++ k +++ ++vn+   + +s+a+   +l++   ++++n  s     GG+r + +t+    s  a+  l   l  e ++ g++v  + PG+++t  
  MMETSP1174-20130828|23778_1 1060 AGRFIHIIVYDITSDRSVvetEKKIDEYCRVHDlVLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFL-PMLRRNAPSRLLNHGSA----GGMRASGFTSaclsSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDTLA 1203
                   566666666666655443111345666666555457899******************************999999996.5778888******9995....8888888875222156677778899********************9965 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.3e-05     0.017      51     192 ..    1061    1206 ..    1052    1214 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
    TIGR03206   51 ggkaeavavditdrasvdaavaaaeealgpvd....vlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsk...tlarelarhgitvnvvcpgptdtalled 192 
                   g   + +  dit+  sv  +   ++e     d    v+vnna    ++         ++  + +n+ gal + +a l+ +      r++n  s  +   +sg    +ac   + a+s+    l  e ++ g+ v ++ pg  dt    d
  MMETSP1174-20130828|23778_1 1061 GRFIHIIVYDITSDRSVVETEKKIDEYCRVHDlvlkVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRVSKAFLPMLRRNAPSRLLNHGSAGGM-RASG--FTSACLSSMAAMSQlneCLREEVSQFGVKVVLMMPGFIDTLAASD 1206
                   555566777888888887776666665544442222889****999876666666789999****************977777789****9885443.4444..56788888888775322677788899999999****999976655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.36   1.8e+02       3      22 ..     992    1011 ..     990    1014 .. 0.85
   2 ?    9.5   0.0   0.00026      0.13      77     196 ..    1094    1214 ..    1058    1234 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.36
    TIGR02415    3 alvtGaaqGiGkaiaerLak 22  
                    +++Ga+ G+G++ia   a+
  MMETSP1174-20130828|23778_1  992 CFIAGAGSGVGREIAASYAN 1011
                   5799**********987765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00026
    TIGR02415   77 eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemr..eeidekla 196 
                    l+v+vnna +++    + +  +++++  +vn +g l     a   + + +   +++n  s  g+++s   sa  s+  a+  l     +e+++ g+ v    PG ++t     ++id+ l+
  MMETSP1174-20130828|23778_1 1094 VLKVVVNNAEMSAYGFAECLPVKSFKENMEVNFFGALRV-SKAFLPMLRRNAPSRLLNHGSAGGMRASGFTSACLSSMAAMSQLNECLREEVSQFGVKVVLMMPGFIDTLAAsdNNIDSSLS 1214
                   479********9999888889999999999999998864.44555566778889*****************************************************995431155666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.18s 00:00:01.07 Elapsed: 00:00:00.68
# Mc/sec: 2544.67
//
Query:       MMETSP1174-20130828|23787_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 260.21
//
Query:       MMETSP1174-20130828|23798_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-10   38.9   0.2    1.5e-10   38.7   0.2    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2   3.7e-14   1.5e-10       1      51 [.      17      64 ..      17      65 .. 0.98

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.7e-14
    TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGk 51
                 +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk
  MMETSP1174-20130828|23798_1 17 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGK 64
                 8999*******************************...************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|23804_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-23   80.4   0.1      3e-23   80.4   0.1    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    4.9e-10   37.0   0.0      5e-10   37.0   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
  ------ inclusion threshold ------
      0.011   13.7   0.1      0.011   13.6   0.1    1.0  1  TIGR03721 exospore_TM: BclB C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   2.2e-26     3e-23     206     264 ..       2      60 ..       1      61 [] 0.96

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 2.2e-26
    TIGR01534 206 aeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaa 264
                  + niip+stgaakav+kv+p+l+gkltg+a+RvPt+dvS+vdl+++l+k +t+e+++a 
  MMETSP1174-20130828|23804_1   2 SGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTADVSVVDLTCRLAKGTTYEDICAT 60 
                  67******************************************************986 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.7e-13     5e-10     201     260 ..       1      60 [.       1      61 [] 0.94

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 3.7e-13
    TIGR01532 201 asqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrv 260
                  as  iip +t+ ak +++++p+l+++l  +a rvpt +v+ +dl+ ++ k +  +++  +
  MMETSP1174-20130828|23804_1   1 ASGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTADVSVVDLTCRLAKGTTYEDICAT 60 
                  6778**********************************************9999998765 PP

>> TIGR03721  exospore_TM: BclB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   8.4e-06     0.011       2      53 ..       2      53 ..       1      59 [. 0.94

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.4e-06
    TIGR03721  2 agaiiPfasGttlaltvlaagladtggliGfGssapglslvGgtidlaaGtt 53
                 +g iiP ++G + a+t ++  l +  + + f      +s+v  t  la+Gtt
  MMETSP1174-20130828|23804_1  2 SGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTADVSVVDLTCRLAKGTT 53
                 689*********************999999*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 230.04
//
Query:       MMETSP1174-20130828|23838_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|23839_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 375.34
//
Query:       MMETSP1174-20130828|23862_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1174-20130828|23863_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 304.31
//
Query:       MMETSP1174-20130828|23864_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 341.35
//
Query:       MMETSP1174-20130828|23866_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.3   0.1      0.039   11.2   0.1    1.0  1  TIGR03514 GldB_lipo: gliding motility-associated lipoprotein GldB


Domain annotation for each model (and alignments):
>> TIGR03514  GldB_lipo: gliding motility-associated lipoprotein GldB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.6e-06     0.039      39      77 ..      16      55 ..       9      60 .] 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.6e-06
    TIGR03514 39 eaksedleklkkkypllfkkyierll.rvsdseilsklva 77
                 ++ksedle+l +++++++++  ++ l +++ ++++ +l +
  MMETSP1174-20130828|23866_1 16 NSKSEDLEELRENFAHFTERVNRENLlSFKAKKWVVELAN 55
                 5677****************88776669*******99954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|23865_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 519.44
//
Query:       MMETSP1174-20130828|23867_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1174-20130828|23868_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 221.74
//
Query:       MMETSP1174-20130828|23874_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1174-20130828|23876_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1174-20130828|23893_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       418  (0.101902); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|23920_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.7   0.4        1.4    6.0   0.0    1.9  2  TIGR00321 dhys: deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> TIGR00321  dhys: deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0   0.00034       1.4      99     132 ..       8      41 ..       1      47 [. 0.87
   2 ?    4.3   0.1    0.0011       4.6      17      48 ..      59      90 ..      45      93 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00034
    TIGR00321  99 dlevddkkLreeginRigdvfvpndefekfeetl 132
                    +v d +L++ gi  i+dv  +  ++++fe++ 
  MMETSP1174-20130828|23920_1   8 RRTVRDPELAKVGIRQIEDVVGRRSRHNEFEYEC 41 
                  5679999************************975 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0011
    TIGR00321 17 idkmartgfqgkrigeaakilkemvedeeiti 48
                 +++m  +g++g+ +++++k + e + ++++++
  MMETSP1174-20130828|23920_1 59 LENMIDSGWHGEELNKMMKAMDEKLAQQNSIV 90
                 578888***************99999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 387.97
//
Query:       MMETSP1174-20130828|23931_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|23929_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|23962_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1174-20130828|24135_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.5   0.1      0.033   11.5   0.0    1.1  1  TIGR00646 MG010: DNA primase-like protein


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     8e-06     0.033     152     182 ..       3      33 ..       1      53 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8e-06
    TIGR00646 152 kkikkvvlcldndlagkvaaknlkeilkkag 182
                  + i kv+  +d+d +gk + +n+k++ k+ g
  MMETSP1174-20130828|24135_1   3 EDIAKVFQLYDDDNTGKISLRNMKRVAKELG 33 
                  6799**********************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 251.60
//
Query:       MMETSP1174-20130828|24154_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|24178_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   28.5   0.0    1.2e-07   28.5   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
     0.0012   15.7   0.0     0.0014   15.5   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      0.004   14.4   0.0     0.0041   14.4   0.0    1.0  1  TIGR01978 sufC: FeS assembly ATPase SufC
      0.004   14.7   0.0     0.0048   14.4   0.0    1.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
  ------ inclusion threshold ------
      0.016   12.4   0.0      0.016   12.4   0.0    1.0  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      0.026   10.9   0.0      0.026   10.9   0.0    1.0  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      0.031   10.4   0.0      0.035   10.2   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.1e-10   1.2e-07     183     225 ..       1      43 [.       1      62 [. 0.84

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 2.1e-10
    TIGR03719 183 llldePtnhldaesvaWlekflkeykGtvvavthdryfldnva 225
                  l+ldePtn+ld es+  +   +k ykG ++++th+  f + v+
  MMETSP1174-20130828|24178_1   1 LVLDEPTNYLDRESLGAMAAAIKIYKGGILLITHNSEFSQTVC 43 
                  6789999999999999999999999999999999888877664 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.3e-06    0.0014     480     521 ..       1      40 [.       1      47 [. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.3e-06
    TIGR02857 480 lllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                  l+lDEPt  LD+e+  ++ +a++ +  g  +ll++H+ + ++
  MMETSP1174-20130828|24178_1   1 LVLDEPTNYLDRESLGAMAAAIKIYKGG--ILLITHNSEFSQ 40 
                  79********************986555..7899**998765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     7e-06    0.0041     167     228 ..       2      60 ..       1      68 [. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7e-06
    TIGR01978 167 iLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGd 228
                  +LDe    lD ++l ++a+ ++ ++    ++l+ith++++ +++ P++ +   dG +  +G 
  MMETSP1174-20130828|24178_1   2 VLDEPTNYLDRESLGAMAAAIKIYK---GGILLITHNSEFSQTVCPETWYCPGDGSLQITGA 60 
                  89****************9999886...69*****************999998888877775 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.2e-06    0.0048     150     188 ..       2      38 ..       1      44 [. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.2e-06
    TIGR01189 150 iLDEPttalDkegvellaellaaHlargGivllathqdl 188
                  +LDEPt  lD+e+   +a++++  + +gGi l++   + 
  MMETSP1174-20130828|24178_1   2 VLDEPTNYLDRESLGAMAAAIK--IYKGGILLITHNSEF 38 
                  8****************99997..779998888766554 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.7e-05     0.016     166     215 ..       1      48 [.       1      63 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-05
    TIGR00972 166 lLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaf 215
                  l+lDePt  LD ++   + + i+  k    i+++thn ++++ v  +t +
  MMETSP1174-20130828|24178_1   1 LVLDEPTNYLDRESLGAMAAAIKIYKG--GILLITHNSEFSQTVCPETWY 48 
                  689******************998876..6999*******9999988876 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.5e-05     0.026     476     519 ..       1      41 [.       1      62 [. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.5e-05
    TIGR01842 476 vvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel 519
                  +vLDeP   LD e   a+a+a+k     k  +++ith  +  ++
  MMETSP1174-20130828|24178_1   1 LVLDEPTNYLDRESLGAMAAAIK---IYKGGILLITHNSEFSQT 41 
                  69***************999985...556778899998776555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     6e-05     0.035     625     663 ..       1      37 [.       1      42 [. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6e-05
    TIGR03375 625 llLDEPtsalDnsseekllerLkelladkTlvlvtHrts 663
                  l+LDEPt+ lD++s   +  ++k +  +  ++l+tH ++
  MMETSP1174-20130828|24178_1   1 LVLDEPTNYLDRESLGAMAAAIKIY--KGGILLITHNSE 37 
                  79*************9999999865..456899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:01.41
# Mc/sec: 64.59
//
Query:       MMETSP1174-20130828|24206_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    5.6   8.8        5.5    5.4   6.1    1.2  1  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.1    0.0013       5.5      42      81 ..      20      59 ..       7      60 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0013
    TIGR01601 42 inrsnekndieskseiqLnnnnpkddeddkdnifkkdkkn 81
                 +++s   +d  + +e+ ++ +n+ d  +d  +  k++kkn
  MMETSP1174-20130828|24206_1 20 LQTSSTSSDGTTNAEKNVKKKNDSDGSNDNTTAEKDEKKN 59
                 67899999999*******************999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.69
# Mc/sec: 135.81
//
Query:       MMETSP1174-20130828|24224_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|24234_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|24262_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 185.50
//
Query:       MMETSP1174-20130828|24333_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.3   0.1      0.038   11.3   0.0    1.1  1  TIGR00646 MG010: DNA primase-like protein


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.2e-06     0.038     151     182 ..      20      51 ..       6      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.2e-06
    TIGR00646 151 qkkikkvvlcldndlagkvaaknlkeilkkag 182
                  ++ i kv+  +d+d +gk + +n+k++ k+ g
  MMETSP1174-20130828|24333_1  20 KEDIAKVFELYDDDNTGKISLRNMKRVAKELG 51 
                  5689**********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.57
# Mc/sec: 154.75
//
Query:       MMETSP1174-20130828|24349_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.45
# Mc/sec: 161.32
//
Query:       MMETSP1174-20130828|24354_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1174-20130828|24366_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|24423_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|24445_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|24478_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 229.76
//
Query:       MMETSP1174-20130828|24502_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1174-20130828|24513_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|24515_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.1   0.2      0.032   11.9   0.1    1.1  1  TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family


Domain annotation for each model (and alignments):
>> TIGR03344  VI_effect_Hcp1: type VI secretion system effector, Hcp1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   7.9e-06     0.032      19      68 ..       7      56 ..       2      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.9e-06
    TIGR03344 19 agcstldsiGnkyqeghedeievlafshelerpanaqeGattgrvnhkpi 68
                 +g+s ++s+G   ++ h  +++  ++++ele+  ++++G+   +v  +++
  MMETSP1174-20130828|24515_1  7 NGASLQESVGAMLDATHLSSFFTAEMHEELETLSSPDSGQHEPTVTNNEV 56
                 689999**********************************9988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 270.75
//
Query:       MMETSP1174-20130828|24524_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1174-20130828|24548_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   45.3   0.2    2.9e-06   25.3   0.0    2.0  2  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   8.6e-09   3.5e-05      86     125 ..       2      42 ..       1      43 [. 0.96
   2 !   25.3   0.0     7e-10   2.9e-06       3      44 ..      39      80 ..      37      82 .] 0.95

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 8.6e-09
    TIGR00229  86 kdGseiwvevsvspird.aggelgvvgivrDIterkeaeee 125
                  k+G ++ + ++ ++ rd +g+++gvvgi +DIt r  +e+e
  MMETSP1174-20130828|24548_1   2 KNGARVEILLNATSRRDvEGRVVGVVGIGQDITARIAQEQE 42 
                  89**********************************99997 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 7e-10
    TIGR00229  3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaee 44
                 +e+ y  ++++++++i+ vde+G+++ +N+ ++ ++GY+ e+
  MMETSP1174-20130828|24548_1 39 QEQEYVRLIDTANAPIFGVDENGKVTVWNKCAKILTGYTVED 80
                 7999***********************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|24603_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 175.03
//
Query:       MMETSP1174-20130828|24605_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.65    8.2   9.1       0.69    8.1   6.3    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.3   0.00017      0.69      50      88 ..       6      45 ..       2      53 .] 0.49

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
    TIGR03685 50 ieeaiekaaaapvaaaaaaaaaaeaa.eeekeeeeeeeee 88
                 +e++i+ aa   +  aaa  aa++ a +e+++ e++++e 
  MMETSP1174-20130828|24605_1  6 VEKVIAAAAEREAKRAAAEKAAEQVAtKERTKGEKKKKET 45
                 6788888877766655554443333303333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 184.09
//
Query:       MMETSP1174-20130828|24609_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|24613_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-20   69.4   0.0    6.7e-20   69.4   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    2.8e-08   31.2   0.0    2.9e-08   31.2   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   3.2e-23   6.7e-20     191     241 ..       1      51 [.       1      52 [] 0.97

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 3.2e-23
    TIGR01534 191 lDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtp 241
                  +Da ++kd+r +R a+ niip+stgaakav+kv+p+l+gkltg+a+RvPt+
  MMETSP1174-20130828|24613_1   1 VDASSNKDWRGGRCASGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPTA 51 
                  699999*******************************************96 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.4e-11   2.9e-08     189     236 ..       2      50 ..       1      52 [] 0.93

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.4e-11
    TIGR01532 189 dayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvpt 236
                  da  n d r  r+as  iip +t+ ak +++++p+l+++l  +a rvpt
  MMETSP1174-20130828|24613_1   2 DASSNkDWRGGRCASGNIIPSSTGAAKAVTKVIPDLQGKLTGMAFRVPT 50 
                  676666******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|24615_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   10.3   4.3      0.088   10.3   3.0    1.1  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
       0.18    9.6   5.3       0.57    8.0   0.2    2.7  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   4.3e-05     0.088      43      77 ..       9      43 ..       6      65 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.3e-05
    TIGR03789 43 aliGlgsGallGavVgGPvGaiiggitGgligqav 77
                 + +Gl+ G+++G++Vg  vG  +g  +G  +g+++
  MMETSP1174-20130828|24615_1  9 EDVGLAVGVVVGTLVGRDVGLAVGFPVGEDVGREL 43
                 569********************999998888766 PP

>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   0.00028      0.57      39      58 ..       3      22 ..       1      23 [. 0.88
   2 ?    5.6   0.4    0.0016       3.2      39      56 ..      19      36 ..      19      39 .. 0.83
   3 ?    0.7   0.0     0.054   1.1e+02      39      48 ..      35      44 ..      30      45 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00028
    TIGR01149 39 iGkkvGRDiGiLYGlviGll 58
                 +G  vG D+G+  G+v+G l
  MMETSP1174-20130828|24615_1  3 VGLPVGEDVGLAVGVVVGTL 22
                 6888**************76 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0016
    TIGR01149 39 iGkkvGRDiGiLYGlviG 56
                 +G  vGRD+G+  G  +G
  MMETSP1174-20130828|24615_1 19 VGTLVGRDVGLAVGFPVG 36
                 5888******98887665 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.054
    TIGR01149 39 iGkkvGRDiG 48
                 +G  vGR++G
  MMETSP1174-20130828|24615_1 35 VGEDVGRELG 44
                 6888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 214.12
//
Query:       MMETSP1174-20130828|24621_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   10.2   0.3       0.05   10.3   0.2    1.0  1  TIGR02765 crypto_DASH: cryptochrome, DASH family


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   1.2e-05      0.05     144     197 ..       5      54 ..       1      58 [] 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.2e-05
    TIGR02765 144 eledlPdvftqfRkkveaklkvrksleapeklpalpksedeganlPtleelvea 197
                  +l ++P v+ q  ++v+      + l+ap+++p lp+  + ++++P+l +lv  
  MMETSP1174-20130828|24621_1   5 ALPQVPRVHHQVSRRVNH---QVHRLQAPQQVPRLPQ-LEAPQQVPRLPRLVAL 54 
                  578889999999999988...4567999999999998.6666669988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 212.65
//
Query:       MMETSP1174-20130828|24625_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|24637_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1174-20130828|24640_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 271.98
//
Query:       MMETSP1174-20130828|24643_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1174-20130828|24642_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    6.0   9.1        3.2    5.7   6.3    1.2  1  TIGR02557 HpaP: type III secretion protein HpaP


Domain annotation for each model (and alignments):
>> TIGR02557  HpaP: type III secretion protein HpaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3   0.00078       3.2       7      64 ..      48     105 ..      26     113 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00078
    TIGR02557   7 aaepaearparaarrslslaqlrrrsavasappPrpepppscdedrPepaaetrasea 64 
                  +a+p++  +++ + +  + a  ++++a+++ ++P+ + +p+   ++P+++a t+   a
  MMETSP1174-20130828|24642_1  48 KAAPKKKAAPKKKAAPKKKAATKKKPATKKNAAPKKKAAPKKKKAAPKKKAATKKKPA 105
                  3334433334444444556788999************************999987433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 446.43
//
Query:       MMETSP1174-20130828|24645_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 218.72
//
Query:       MMETSP1174-20130828|24646_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 654.87
//
Query:       MMETSP1174-20130828|24647_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1174-20130828|24648_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|24649_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    5.5   9.0         11    4.3   6.3    1.7  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.3    0.0026        11      57      87 ..      41      71 ..      12      86 .] 0.48

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0026
    TIGR03685 57 aaaapvaaaaaaaaaaeaaeeekeeee..eeee 87
                  a+ pv+++a+   +++++++++++++  +  +
  MMETSP1174-20130828|24649_1 41 PAVSPVSSTATDGDNDDDDDDDDDDNDgdD--D 71
                 222222222222222222222222222221..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 354.72
//
Query:       MMETSP1174-20130828|24650_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|24653_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.56
# Mc/sec: 138.94
//
Query:       MMETSP1174-20130828|24654_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.5    8.7   5.7        0.6    8.4   3.9    1.1  1  TIGR00061 L21: ribosomal protein L21


Domain annotation for each model (and alignments):
>> TIGR00061  L21: ribosomal protein L21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.9   0.00015       0.6      13      85 ..      12      86 .]       5      86 .] 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00015
    TIGR00061 13 veegetvkiekldaeegeeveldkvLlvkkgdevkiGkPyv..egakveaevekegrgkKvkvvkyrrrKksrkk 85
                 +ee  +v+ ek +aee++ ve++k  + +++  v++ k     e+a v ae  + + g+K k  ++++ K + kk
  MMETSP1174-20130828|24654_1 12 AEEQASVEAEKAAAEEQAPVEVEKAAAAEEQAPVEVEKAAAaeEQAPVGAEKAAGETGEKTKAKRKKKNKRKSKK 86
                 678889**********************99999999887652267999999999999999988888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 324.32
//
Query:       MMETSP1174-20130828|24655_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.49
# Mc/sec: 161.62
//
Query:       MMETSP1174-20130828|24656_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|24657_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|24658_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1174-20130828|24698_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 502.57
//
Query:       MMETSP1174-20130828|24701_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   10.7   0.2      0.039   10.5   0.1    1.0  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   9.6e-06     0.039      38      67 ..      23      52 ..      19      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.6e-06
    TIGR01885 38 ryldflsaysavnqGhchpkivkalveqaq 67
                  ++d+l a s v+  hch +  k l +q  
  MMETSP1174-20130828|24701_1 23 SFVDYLYALSRVEILHCHAHFFKGLYHQQM 52
                 589**********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 229.04
//
Query:       MMETSP1174-20130828|24700_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 421.51
//
Query:       MMETSP1174-20130828|24710_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 183.64
//
Query:       MMETSP1174-20130828|24718_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.61
# Mc/sec: 110.35
//
Query:       MMETSP1174-20130828|24726_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1174-20130828|24761_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|24774_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 259.58
//
Query:       MMETSP1174-20130828|24786_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.92
# Mc/sec: 107.60
//
Query:       MMETSP1174-20130828|24805_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 229.04
//
Query:       MMETSP1174-20130828|24817_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 188.08
//
Query:       MMETSP1174-20130828|24846_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|24849_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|24859_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.49
# Mc/sec: 150.84
//
Query:       MMETSP1174-20130828|24935_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 134.30
//
Query:       MMETSP1174-20130828|24999_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|25003_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|25027_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|25073_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|25107_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|25124_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 212.65
//
Query:       MMETSP1174-20130828|25147_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1174-20130828|25155_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.70
# Mc/sec: 103.71
//
Query:       MMETSP1174-20130828|25178_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|25189_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|25193_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|25208_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 310.81
//
Query:       MMETSP1174-20130828|25251_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|25276_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1174-20130828|25297_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 472.71
//
Query:       MMETSP1174-20130828|25316_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1174-20130828|25337_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 325.37
//
Query:       MMETSP1174-20130828|25331_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1174-20130828|25342_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 186.98
//
Query:       MMETSP1174-20130828|25443_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 207.41
//
Query:       MMETSP1174-20130828|25454_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-29   97.6   0.0    1.2e-28   97.3   0.0    1.0  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   2.8e-32   1.2e-28       8     116 ..      14     124 ..      11     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 2.8e-32
    TIGR03677   8 eeladkaleavekaretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaiv..deGkaeelleeivekveel 116
                  +e++ k l++v++a +  ++kkG+ne+tk+++rGi+++vv+++d eP ei+ hlp lce+k++pyv++ +k +lG+a+G++ +  + +++  ++ + +++++++ + +e+l
  MMETSP1174-20130828|25454_1  14 AEMTVKILDLVQQACNYKQLKKGANEATKTLNRGISEFVVLSADAEPLEILLHLPLLCEDKNVPYVFIPSKVALGRACGVSRPVISCSVTsnEASQLKDQINSMKDGIEQL 124
                  68999***************************************************************************9766666555116677788888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 437.65
//
Query:       MMETSP1174-20130828|25480_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|25501_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 371.22
//
Query:       MMETSP1174-20130828|25524_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|25527_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|25568_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|25640_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 664.83
//
Query:       MMETSP1174-20130828|25656_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|25679_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|25738_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|25739_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|25758_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|25799_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|25811_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 205.32
//
Query:       MMETSP1174-20130828|25848_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|25857_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|25872_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 206.09
//
Query:       MMETSP1174-20130828|25893_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-33  113.4   0.0    2.2e-33  113.3   0.0    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
    6.4e-25   85.5   0.0    6.9e-25   85.4   0.0    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   1.1e-36   2.2e-33     408     479 ..       2      73 .]       1      73 [] 0.99

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 1.1e-36
    TIGR02350 408 tiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsa 479
                  t+P+kksq+fst +dnqp v i+v+ Ger++++d + lg+f+L+gipp+PrG+pqievtfdidanGil+v+a
  MMETSP1174-20130828|25893_1   2 TVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNA 73 
                  9*********************************************************************97 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   3.3e-28   6.9e-25     399     470 ..       2      73 .]       1      73 [] 0.98

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 3.3e-28
    TIGR01991 399 tiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsa 470
                  t+P++k+q F ty D+q ++ i+v  GeR + +dc  L++F+L gippm+ G+ +i+vtf++Da+G+l+v+a
  MMETSP1174-20130828|25893_1   2 TVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNA 73 
                  89********************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 267.64
//
Query:       MMETSP1174-20130828|25900_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.21s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1174-20130828|25902_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 87.11
//
Query:       MMETSP1174-20130828|25917_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|25924_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1174-20130828|25957_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   26.7   0.0      1e-06   26.7   0.0    1.0  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.5e-10     1e-06      74     119 ..       7      53 ..       1      55 [] 0.85

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.5e-10
    TIGR00229  74 repvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIter 119
                  +e+   e+ +++k+G ++ + ++ ++ rd +g+++gvvgi +DIt r
  MMETSP1174-20130828|25957_1   7 SETANFEFPLITKNGARVEILLNATSRRDvNGQIVGVVGIGQDITAR 53 
                  35556666669**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|25966_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|25972_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|25990_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.1   0.4    1.4e-05   22.1   0.3    1.0  1  TIGR00836 amt: ammonium transporter


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.3   3.3e-09   1.4e-05      41      80 ..       2      43 ..       1      55 [. 0.78

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.3e-09
    TIGR00836 41 ldlavvillyvllGyslafg.eeaetvngfiGtskfglkn.k 80
                 ld +++ l+++++Gy++a+g  ++   n fiG ++f+l+  +
  MMETSP1174-20130828|25990_1  2 LDPCFGALAFWSFGYGFAYGtYKQYGTNTFIGGQYFFLDTfS 43
                 57799***************74456799**********9832 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1174-20130828|26034_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|26060_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 517.80
//
Query:       MMETSP1174-20130828|26097_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 211.18
//
Query:       MMETSP1174-20130828|26125_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|26133_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|26152_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|26190_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 247.98
//
Query:       MMETSP1174-20130828|26239_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-17   59.2   8.1    6.1e-17   59.0   5.6    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
    0.00061   16.2   4.6     0.0007   16.0   3.2    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
  ------ inclusion threshold ------
       0.14   10.2   5.2       0.22    9.5   0.1    2.6  2  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   5.6   4.4e-20   6.1e-17     480     595 ..       2     124 ..       1     125 [. 0.85

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 4.4e-20
    TIGR02350 480 kdkatgkeqsititas.sglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag....dkleeeekekiekaveelkealkeedv..eekikakteelekaleklaealy 595
                  +dk+tgk ++itita+ + lsee+iermv+eae++aeedk  k +++a+n ++ ++y+ ++t+++ +    dkl++e+k+++++ ++e+ + l+e+    +e+ ++k++e+e++++ ++++ly
  MMETSP1174-20130828|26239_1   2 EDKGTGKAETITITAEkGRLSEEDIERMVREAEEFAEEDKMVKARIDAKNGLEGYLYNLKNTIEDDEkglsDKLSDEDKDELDSIINEALDWLDENPEadAEDYEEKQKEVEQVANPIMRELY 124
                  69***********975267********************************************9865233378999***********999988776431134599999999999999998877 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.2   5.1e-07    0.0007     472     582 ..       3     121 ..       1     129 [. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.1e-07
    TIGR01991 472 ekltgveakievkpsy.gLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkd....Llseeelkaikaaleklekale...eddaeaikaaiealeeaskefaa 582
                  +k tg+ ++i++      Ls+e+ie+m++++ + aeeD+ ++a+ ++k   e  l  l++++++d++     ls e++ ++++ ++++ + l+   e dae+ +++ +++e++++ +++
  MMETSP1174-20130828|26239_1   3 DKGTGKAETITITAEKgRLSEEDIERMVREAEEFAEEDKMVKARIDAKNGLEGYLYNLKNTIEDDEKglsdKLSDEDKDELDSIINEALDWLDenpEADAEDYEEKQKEVEQVANPIMR 121
                  567899999999876526******************************99999*********999762111466677777777777766655511146788888888899988887665 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00016      0.22      10      32 ..      21      43 ..      18      45 .. 0.90
   2 ?    1.3   1.2     0.056        77       6      21 ..      71      89 ..      66     101 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00016
    TIGR01639 10 ltkEelnelinsLdeivnrndml 32
                 l++E++++++++  e+ +  +m 
  MMETSP1174-20130828|26239_1 21 LSEEDIERMVREAEEFAEEDKMV 43
                 9**************99999986 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.056
    TIGR01639  6 lskkltkEe...lnelins 21
                 ls+kl++E+   l+ +in+
  MMETSP1174-20130828|26239_1 71 LSDKLSDEDkdeLDSIINE 89
                 8999999963335555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|26274_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-40  136.6   0.0    2.1e-40  136.5   0.0    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
      8e-26   88.5   0.0      9e-26   88.3   0.0    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.0     1e-43   2.1e-40       2     130 ..      28     162 ..      27     164 .] 0.92

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 1e-43
    TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen..evkveved..keytpeeisaeiLqklkkdaeaylGekv 130
                  +iGidLGtt s+v v++ g+ ++i+n +G+r tPs+v++   gerl+G++ak+qa +npe+t++ +krliGrk+    v++++k +p+k++++++   v+vev++  k ++peeisa+iL+k+++ ae ++G+++
  MMETSP1174-20130828|26274_1  28 VIGIDLGTTYSCVGVFQNGRVEIIPNDQGNRITPSYVSWDPAGERLIGDAAKNQATVNPEQTVFDVKRLIGRKYGdkTVQADKKLLPFKIISKDDkpFVQVEVKGdlKAFAPEEISAMILSKMRTVAEGFMGKDI 162
                  8************************************************************************9755799999*********99955466666653489***********************998 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   4.4e-29     9e-26       1     130 [.      28     162 ..      28     164 .] 0.89

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 4.4e-29
    TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGr..sledvkkeaeelpyeledakge.mvrlktaqg..evtPvevsaeiLkklkkraeealgkel 130
                  ++GiDlGtt+s v + ++g++e++++++g+ + ps v++   g+  +G++ak++a+ +p++t+  vkRl+Gr  + + v++ ++ lp+++ +++++  v+++++      +P e+sa iL+k+++ ae  +gk++
  MMETSP1174-20130828|26274_1  28 VIGIDLGTTYSCVGVFQNGRVEIIPNDQGNRITPSYVSWDPAGERLIGDAAKNQATVNPEQTVFDVKRLIGRkyGDKTVQADKKLLPFKIISKDDKpFVQVEVKGDlkAFAPEEISAMILSKMRTVAEGFMGKDI 162
                  59**********************************************************************3345668999999****9665553267777766655789*******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 618.46
//
Query:       MMETSP1174-20130828|26285_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    4.6   6.4        3.8    4.4   4.4    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   4.4   0.00094       3.8      70     114 ..      49      91 ..      40      94 .] 0.48

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00094
    TIGR00601  70 vvvmvskkKavkakaaePaatpesaptptp.satpasvaekksaaP 114
                   v+ +  + + +   ++P+++p+  p++tp +++ as++++++ +P
  MMETSP1174-20130828|26285_1  49 TVCYLCPTASPT---GSPSSEPSGEPSSTPtASPTASPTASPTGSP 91 
                  555554443333...4455555554544443344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 427.83
//
Query:       MMETSP1174-20130828|26286_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.57
# Mc/sec: 159.30
//
Query:       MMETSP1174-20130828|26288_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-15   53.9   0.1    4.2e-14   50.6   0.0    1.9  2  TIGR00229 sensory_box: PAS domain S-box protein
     0.0009   17.2   0.0    0.00095   17.1   0.0    1.1  1  TIGR02373 photo_yellow: photoactive yellow protein
     0.0021   14.9   0.0     0.0024   14.8   0.0    1.0  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.019   11.9   0.0    1.0  1  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0062       6.4     109     125 ..       2      18 ..       1      19 [. 0.91
   2 !   50.6   0.0   4.1e-17   4.2e-14       3      74 ..      15      87 ..      13      93 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0062
    TIGR00229 109 vvgivrDIterkeaeee 125
                  vvgi +DIt r  +e+e
  MMETSP1174-20130828|26288_1   2 VVGIGQDITARIAQEQE 18 
                  899*********99997 PP

  == domain 2    score: 50.6 bits;  conditional E-value: 4.1e-17
    TIGR00229  3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrleger 74
                 +e+ y  ++++++++i+ vde+G+++ +N+++  ++GY+ e+ +Gr++ + +i+++ r+ v+e++ ++l+g +
  MMETSP1174-20130828|26288_1 15 QEQEYVRLIDTANAPIFGVDENGKVTVWNKSASNVTGYTVEDTMGRHLVQdFITPDFRSSVQEVLDKALQGSE 87
                 7999**********************************************9*******************543 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.3e-07   0.00095       9      66 ..       8      67 ..       2      94 .] 0.68

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.3e-07
    TIGR02373  9 dientlakmgd.ae.ldalafGaiqldesGrilkynkaegelaGrdPekviGknffkeva 66
                 di   +a++++  + +d+       +de+G+++ +nk+ ++++G + e+ +G+++ ++  
  MMETSP1174-20130828|26288_1  8 DITARIAQEQEyVRlIDTANAPIFGVDENGKVTVWNKSASNVTGYTVEDTMGRHLVQDFI 67
                 56666665554233145555556679****************************999953 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.3e-06    0.0024       8      67 ..      19      78 ..      12      91 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.3e-06
    TIGR02966  8 lrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelkeylaek 67
                 + + +++ + +++ +de+++++ +Nk+a+++ g ++++ +g+++ + + +p++++ ++e 
  MMETSP1174-20130828|26288_1 19 YVRLIDTANAPIFGVDENGKVTVWNKSASNVTGYTVEDTMGRHLVQDFITPDFRSSVQEV 78
                 55567777889999***************************************9988774 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05     0.019     124     196 ..       8      80 ..       3      92 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.8e-05
    TIGR02040 124 DYwklReiEtRYRlllevsseavllvdvstgrileansaAaalLgaegqslvGrelaqeleere.reeleellr 196
                  D  +    E  Y +l++ ++ ++  vd+ +g++   n++A+ + g + ++ +Gr+l q++ + + r +++e+l 
  MMETSP1174-20130828|26288_1   8 DITARIAQEQEYVRLIDTANAPIFGVDE-NGKVTVWNKSASNVTGYTVEDTMGRHLVQDFITPDfRSSVQEVLD 80 
                  5555556688899999999999999987.578888999999999999999999999988765542445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 354.49
//
Query:       MMETSP1174-20130828|26290_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 135.87
//
Query:       MMETSP1174-20130828|26293_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 302.30
//
Query:       MMETSP1174-20130828|26291_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 687.94
//
Query:       MMETSP1174-20130828|26295_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 241.44
//
Query:       MMETSP1174-20130828|26299_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 319.33
//
Query:       MMETSP1174-20130828|26303_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 246.95
//
Query:       MMETSP1174-20130828|26301_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-68  229.6   0.0    1.2e-68  229.5   0.0    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
    3.3e-51  172.3   0.0    3.6e-51  172.2   0.0    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    9.2e-13   46.3   0.4    3.1e-11   41.3   0.2    2.0  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0022   14.8   0.0     0.0027   14.5   0.0    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
  ------ inclusion threshold ------
       0.02   11.5   0.0      0.026   11.2   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.5   0.0   1.5e-71   1.2e-68     247     395 ..       1     150 []       1     150 [] 0.97

  Alignments for each domain:
  == domain 1    score: 229.5 bits;  conditional E-value: 1.5e-71
    TIGR02028 247 aggkiirveahpipehprprrvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkkvieeg.dlkkylkrwdkeyrptyrvldllqrvfyrsnaarealvemcadedvqkltfdsylykrvapaepledlkllvktigs 395
                  +ggkii+veahpipeh rprrvvgr alvgdaagyvtk+sgegiyfaaksgr+ ae i   +++g ++++e  ++++y+k +d++y+pty vld+lq+vfy +n area+ve+c+ e+vq++tfdsylykrv   +p+ed+kll +tigs
  MMETSP1174-20130828|26301_1   1 EGGKIIKVEAHPIPEHMRPRRVVGRAALVGDAAGYVTKCSGEGIYFAAKSGRMAAENICRLMQGGTRLPTEQeIKQTYIKDYDRAYGPTYTVLDILQKVFYSNNGAREAFVELCDSEYVQRVTFDSYLYKRVQGNSPIEDIKLLGNTIGS 150
                  69******************************************************************887616678***********************************************************************97 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.2   0.0   4.4e-54   3.6e-51     242     384 ..       2     149 ..       1     150 [] 0.96

  Alignments for each domain:
  == domain 1    score: 172.2 bits;  conditional E-value: 4.4e-54
    TIGR02023 242 ggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg.....datdLrkyekkfmklyktvfrvLrvlqkvyYrsdkrrekfvelCrdkdvqkltfdsYlykklvpasklaqlklalknia 384
                  ggk+i++ea+piP++ r+r+  +r++LvGDaaG+v+k+sGeGiy+a+ksG++aae i   ++ g     +++  ++y k +++ y+++++vL++lqkv+Y ++ +re+fvelC  ++vq++tfdsYlyk++  +s+++++kl  ++i+
  MMETSP1174-20130828|26301_1   2 GGKIIKVEAHPIPEHMRPRRVVGRAALVGDAAGYVTKCSGEGIYFAAKSGRMAAENICRLMQGGtrlptEQEIKQTYIKDYDRAYGPTYTVLDILQKVFYSNNGAREAFVELCDSEYVQRVTFDSYLYKRVQGNSPIEDIKLLGNTIG 149
                  689***********************************************************889999666667889*****************************************************************999987 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   3.8e-14   3.1e-11     242     297 .]       4      58 ..       1      58 [. 0.88
   2 ?    3.4   0.0     0.013        11      60     104 ..      92     135 ..      70     141 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 3.8e-14
    TIGR02032 242 eevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaevv 297
                  ++++v++++iP  +  +++v + + lvGDAAg V   +GeGI++a+++g++Aae +
  MMETSP1174-20130828|26301_1   4 KIIKVEAHPIPEHMRPRRVVGR-AALVGDAAGYVTKCSGEGIYFAAKSGRMAAENI 58 
                  6789999****99777666655.799***************************976 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.013
    TIGR02032  60 vnevrkariispngekveieeeeeealvidRkefDelLaekAqea 104
                  v ++ ++ ++s+ng   e++ e   +  ++R  fD +L +++q +
  MMETSP1174-20130828|26301_1  92 VLDILQKVFYSNNG-AREAFVELCDSEYVQRVTFDSYLYKRVQGN 135
                  45555778888888.77888888888899***********99976 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.3e-06    0.0027     331     413 ..      22     105 ..      11     113 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.3e-06
    TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLk.kyererkakNvallalvdklkklYstdfp 413
                  v  r+ALvGDAA  v    G G+    +  ++ ++ + + ++ G+ l   + +k  y ++  ++  +  +++d l+k++  +++
  MMETSP1174-20130828|26301_1  22 VVGRAALVGDAAGYVTKCSGEGIYFAAKSGRMAAENICRLMQGGTRLPTEQEIKqTYIKDYDRAYGPTYTVLDILQKVFYSNNG 105
                  6789*******************************************9998886269999999**************9887776 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05     0.026     264     357 ..      10     104 ..       6     110 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
    TIGR01988 264 afPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavL.krYererradnaallaatdllnrlfsndf 357
                  a P+  ++  r v  r al+GdAA  v    G G+ +  +  +  ae + + ++ g  + + + + + Y ++   +  +++ ++d+l+++f +++
  MMETSP1174-20130828|26301_1  10 AHPIPEHMRPRRVVGRAALVGDAAGYVTKCSGEGIYFAAKSGRMAAENICRLMQGGTRLPTEQEIkQTYIKDYDRAYGPTYTVLDILQKVFYSNN 104
                  567777778889999***************************9999999999999999877766626799999999*************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 535.09
//
Query:       MMETSP1174-20130828|26305_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|26307_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.56
# Mc/sec: 169.04
//
Query:       MMETSP1174-20130828|26309_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 271.52
//
Query:       MMETSP1174-20130828|26311_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.1  16.3        2.1    5.8   3.3    2.7  2  TIGR03187 DGQHR: DGQHR domain
        1.5    6.3   8.5        2.2    5.8   5.9    1.4  1  TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI
        2.8    4.7   7.2        5.5    3.7   0.7    2.0  2  TIGR04172 DGQHR_dnd_1: DNA phosphorothioation-associated DGQHR protein 1


Domain annotation for each model (and alignments):
>> TIGR03187  DGQHR: DGQHR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.6    0.0072       9.8      20      52 ..      12      46 ..       1      48 [. 0.58
   2 ?    5.8   3.3    0.0015       2.1      29      53 ..      36      62 ..      31      63 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0072
    TIGR03187 20 vLakiaavsr..dedeeetlegaQRplnksRikei 52
                  L ++ +v+r  +e+ +++l++ QR+++++R+k++
  MMETSP1174-20130828|26311_1 12 RLKELQRVQReeEEKRLKELQRVQREEEEKRLKDL 46
                 34444444444456666666666666666666666 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0015
    TIGR03187 29 r..dedeeetlegaQRplnksRikeia 53
                 r  +e+ ++ l++ QR+++++R+ke++
  MMETSP1174-20130828|26311_1 36 ReeEEKRLKDLQRVQREEEEKRLKEMQ 62
                 344788899999***********9986 PP

>> TIGR01868  casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.9    0.0016       2.2      46      86 ..      18      56 ..       2      62 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
    TIGR01868 46 reeeerlqelaeelrfavrvdregklllDfqtvklsgkrkk 86
                 r ++e  +++ +el+ + r++ e+k+l D q+v+  + ++k
  MMETSP1174-20130828|26311_1 18 RVQREEEEKRLKELQRVQREE-EEKRLKDLQRVQREE-EEK 56
                 444444455555555555555.558888888888853.333 PP

>> TIGR04172  DGQHR_dnd_1: DNA phosphorothioation-associated DGQHR protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   3.9    0.0064       8.7      25      57 ..      15      47 ..       2      55 .. 0.57
   2 ?    3.7   0.7    0.0041       5.5      33      56 ..      36      61 ..      31      63 .] 0.67

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0064
    TIGR04172 25 kvtysleaeenedg..yklsGsqRklklkRlkeia 57
                 ++  + + ee+  +   +l+ +qR++++kRlk++ 
  MMETSP1174-20130828|26311_1 15 ELQRVQREEEE--KrlKELQRVQREEEEKRLKDLQ 47
                 33333222222..2236777777777777777765 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0041
    TIGR04172 33 eenedg..yklsGsqRklklkRlkei 56
                 +e+e++    l+ +qR++++kRlke+
  MMETSP1174-20130828|26311_1 36 REEEEKrlKDLQRVQREEEEKRLKEM 61
                 33344445678888999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       419  (0.102145); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|26314_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 211.88
//
Query:       MMETSP1174-20130828|26317_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.57
# Mc/sec: 234.39
//
Query:       MMETSP1174-20130828|26318_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.1    5.3   9.0        1.6    7.7   3.7    1.7  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.3   1.2e+03      15      17 ..       8      10 ..       1      19 [. 0.44
   2 ?    7.7   3.7    0.0004       1.6       9      44 ..      25      59 ..      22      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.3
    TIGR04101 15 kak 17
                 +ak
  MMETSP1174-20130828|26318_1  8 AAK 10
                 111 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0004
    TIGR04101  9 Fkkkkskakqekleleaieqaeqseekvaaeieekk 44
                 Fk   ++a++ ++ l a+e+a++  ek+aae++ek+
  MMETSP1174-20130828|26318_1 25 FKAAGAAAEKAVV-LAAAEKAAEAAEKAAAEAAEKA 59
                 8888888888888.8999*************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.99
# Mc/sec: 91.99
//
Query:       MMETSP1174-20130828|26319_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 144.36
//
Query:       MMETSP1174-20130828|26321_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 162.79
//
Query:       MMETSP1174-20130828|26322_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|26316_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-20   69.6   0.0    7.1e-20   69.3   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.7e-08   30.2   0.3    9.1e-05   19.3   0.0    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    8.4e-07   25.9   0.0    9.6e-07   25.7   0.0    1.1  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.8e-06   25.1   0.6    3.1e-05   21.0   0.4    2.0  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    2.6e-06   24.5   0.0      0.005   13.7   0.0    2.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    2.9e-06   24.4   0.3    1.4e-05   22.2   0.1    1.8  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    5.9e-06   23.2   0.0     0.0018   15.0   0.0    2.0  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    4.5e-05   20.6   0.1      0.013   12.5   0.1    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    7.8e-05   19.0   0.0    9.5e-05   18.7   0.0    1.0  1  TIGR01393 lepA: GTP-binding protein LepA
    0.00018   18.8   0.1      0.018   12.2   0.0    2.4  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    0.00019   18.7   0.0       0.14    9.3   0.0    2.0  2  TIGR00436 era: GTP-binding protein Era
     0.0005   17.6   0.0      0.013   13.1   0.0    2.0  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
      0.019   12.0   0.0      0.024   11.6   0.0    1.2  1  TIGR01540 portal_PBSX: phage portal protein, PBSX family


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   2.2e-22   7.1e-20       2     141 ..      15     146 ..      14     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 2.2e-22
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklna 141
                  +e++++++G +++GK+t+l+++++++  +  + p+ ++++ +    +d   +k+n++D++Gq+  ++ +r y+ ++++++ vvd +    + +e   ++ +++ +e k +gvp+++++nK+Dl +++++++ s++  +n 
  MMETSP1174-20130828|26316_1  15 NEARVLVLGLDNAGKTTILKKMSDED--PANIAPTQGFNIKS--LSVDE--FKLNVWDIGGQASIRPYWRNYFDNTDALVYVVDAADT-RRGSESA-QELQQLLNESKLAGVPLLVFANKMDLGNSMEEDEVSEILMMND 146
                  5789**********************..88887888888777..69999..99**********************************9.7777777.788888888888**********************999988875 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00038      0.12     181     213 ..       8      40 ..       5      48 .. 0.88
   2 !   19.3   0.0   2.9e-07   9.1e-05     268     342 ..      83     167 ..      79     177 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00038
    TIGR03156 181 rkkrkksevptvalvGYTNaGKstllnaltkae 213
                  rk +k+++  +v + G  NaGK+t+l+++ +++
  MMETSP1174-20130828|26316_1   8 RKLKKTNNEARVLVLGLDNAGKTTILKKMSDED 40 
                  77888999999*****************99875 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 2.9e-07
    TIGR03156 268 eadlllhvvDasdeea.eeqieaveevLeelgaeeipvllvlNkidkle...eeeleeleekk......eeavlvsAkkgeglee 342
                  ++d l+ vvDa+d ++ +e++++ +++L+e +++ +p l+  Nk+d+ +   e+e++e    +       + +  sAk+g++l+e
  MMETSP1174-20130828|26316_1  83 NTDALVYVVDAADTRRgSESAQELQQLLNESKLAGVPLLVFANKMDLGNsmeEDEVSEILMMNdisdreWHLLGCSAKTGDNLQE 167
                  6899*********9873677899***********************988444333333222222222113355667777777665 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     3e-09   9.6e-07     137     246 ..      62     173 ..       8     189 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 3e-09
    TIGR00487 137 itflDtPGheaftsmrarGakvtDivvlvvaadDGvk.....pqtieaiehakaanvPiivainkiDkpea.npDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiL 246
                  +   D  G ++         + tD  v vv a D  +     +  ++ ++ +k a+vP++v+ nk+D  ++ + D v + l   ++   ew    +++  sa++g++++e l+ ++
  MMETSP1174-20130828|26316_1  62 LNVWDIGGQASIRPYWRNYFDNTDALVYVVDAADTRRgsesaQELQQLLNESKLAGVPLLVFANKMDLGNSmEEDEVSEILMMNDISDREW----HLLGCSAKTGDNLQEGLEWLV 173
                  55555555555555555556779999999999986432212144566799*****************976538999*99999999999999....699************998754 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4   9.9e-08   3.1e-05     197     338 ..       4     141 ..       2     186 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.9e-08
    TIGR00450 197 lnsrkkleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiek.slkaikeadlvlyvlDask...pltkdd...eliitlkkkkkdlllvlNKiDLa..eleilksel 338
                  ln  +kl+k ++  ++ ++G  N+GK  +l  ++++d a ++  +G       ++l ++ +++++ D  G          + i+   ++  +++d ++yv+Da     + + ++   +l++++k +  +ll++ NK+DL    +e ++se+
  MMETSP1174-20130828|26316_1   4 LNLLRKLKKTNNEARVLVLGLDNAGKTTILKKMSDEDPANIAPTQGFN----IKSLSVDEFKLNVWDIGGQ---------ASIRPyWRNYFDNTDALVYVVDAADtrrGSESAQelqQLLNESKLAGVPLLVFANKMDLGnsMEEDEVSEI 141
                  5553489********************************999888864....4789***********9993.........444431467889999999999986511133333322367788888889************74222333332 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00048      0.15     158     182 ..      17      41 ..      10      48 .. 0.87
   2 !   13.7   0.0   1.6e-05     0.005     234     327 ..      82     175 ..      74     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00048
    TIGR02729 158 advglvGlpnaGkStllsavsaakp 182
                  a v ++Gl naGk t+l+++s+  p
  MMETSP1174-20130828|26316_1  17 ARVLVLGLDNAGKTTILKKMSDEDP 41 
                  66889****************9776 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.6e-05
    TIGR02729 234 ertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel....ekkvlaisaltkegleellkkllel 327
                  ++t  l++++d++++  +   e+++ +++ L++  ++La  p lv +nk+dl ++ e +e+ + l  +     e ++l  sa t+++l+e l+ l+e+
  MMETSP1174-20130828|26316_1  82 DNTDALVYVVDAADT--RRGSESAQELQQLLNE--SKLAGVPLLVFANKMDLGNSMEEDEVSEILMMNDisdrEWHLLGCSAKTGDNLQEGLEWLVEK 175
                  68999*******998..5566667777776664..789**************9986666666555443335557888999999999999877766665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0008      0.25     172     210 ..      13      51 ..       5      63 .. 0.78
   2 !   22.2   0.1   4.3e-08   1.4e-05       2     170 ..      18     186 ..      17     190 .] 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0008
    TIGR03594 172 eeepikiaiiGrpNvGKStLvNallgeervivsdiaGtT 210
                  ++++ ++ ++G  N+GK t++ ++ +e+ + + ++ G  
  MMETSP1174-20130828|26316_1  13 TNNEARVLVLGLDNAGKTTILKKMSDEDPANIAPTQGFN 51 
                  355689999***********9999999988777777765 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 4.3e-08
    TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare..glteeDeeiaklLrksk...kpvilvvNKvdnk..keeaeaaefyslG.lge....vlaiSaehgrgikdLldeileelpeeeeeeeee 170
                   v ++G  N GK t++ ++  +  A ++ t+g     + ++ ++++ ++++ D gG         ++ir   +   ++ d++++vvda +  + +e+ +e+ +lL++sk    p+++ +NK+d     ee e++e+  ++ +++    +l  Sa+ g+++++ l+ ++e+++e+ee +e++
  MMETSP1174-20130828|26316_1  18 RVLVLGLDNAGKTTILKKMSDEDPANIAPTQGF----NIKSLSVDEFKLNVWDIGGQ--------ASIRPYWRNYFDNTDALVYVVDAADtrRGSESAQELQQLLNESKlagVPLLVFANKMDLGnsMEEDEVSEILMMNdISDrewhLLGCSAKTGDNLQEGLEWLVEKVNEAEELSESK 186
                  58899***********************99997....8999***************7........77888999999***********987224567778999999998877799*********65224455566666554243223336779*******************9998866554 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0026      0.81       6      40 ..      15      49 ..      11      56 .. 0.87
   2 !   15.0   0.0   5.7e-06    0.0018      82     170 ..      79     179 ..      71     187 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0026
    TIGR03918  6 erlhialfGrrNaGKSsliNaltgqdvaivsdvpG 40
                 +  ++ ++G  NaGK +++ ++ ++d a ++ ++G
  MMETSP1174-20130828|26316_1 15 NEARVLVLGLDNAGKTTILKKMSDEDPANIAPTQG 49
                 56778899******************998888887 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.7e-06
    TIGR03918  82 evlektdlallvvdaeaeleele.....eelleelkekkipvivvlnkidlkeeeke.......keklekkkeeevvlvsakekegieelkealiellpee 170
                  + +++td  ++vvda+ + +  e     ++ll+e k   +p++v +nk+dl ++++e       + ++ + +e +++ +sak++++++e  e l+e+++e 
  MMETSP1174-20130828|26316_1  79 NYFDNTDALVYVVDAADTRRGSEsaqelQQLLNESKLAGVPLLVFANKMDLGNSMEEdevseilMMNDISDREWHLLGCSAKTGDNLQEGLEWLVEKVNEA 179
                  67899********987654433311112567778888889***********99887655443333445566677888999999999998888888887765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     4e-05     0.013     142     177 ..       3      38 ..       1      64 [. 0.88
   2 !    6.4   0.0    0.0029      0.92      60     149 ..      79     172 ..      68     183 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-05
    TIGR03597 142 lkellelikkarekkdvyvvGvtNVGKSsliNkllk 177
                  l +ll+++kk++++  v+v+G  N GK +++ k+ +
  MMETSP1174-20130828|26316_1   3 LLNLLRKLKKTNNEARVLVLGLDNAGKTTILKKMSD 38 
                  56899**************************99865 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0029
    TIGR03597  60 slsekkalvvavvDifdle.gs.likelkrfvkenkv.....llvvNKidllpksvklekikew.lkkeakeeglkpvdillvsakkkkglkelleli 149
                  ++ +++  +v+vvD  d   gs   +el+++++e k+     l+ +NK+dl  +s+++++++e  + + +++  ++    l  sak++ +l+e le++
  MMETSP1174-20130828|26316_1  79 NYFDNTDALVYVVDAADTRrGSeSAQELQQLLNESKLagvplLVFANKMDL-GNSMEEDEVSEIlMMNDISDREWH---LLGCSAKTGDNLQEGLEWL 172
                  5567788899*******97344246899999998764333316678****7.556666666665167778887777...6677777777777766664 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     3e-07   9.5e-05      68     184 ..      58     181 ..      46     189 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3e-07
    TIGR01393  68 eeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGve....aqtlanvylalekdleiiPvi...nkidlPsadvervkkeieeviGld..aeeailvsaktGigieelleaivkkvpaPkg 184
                  +e++ln+ d  G +         +  ++  + +vdaa        aq l ++    e++l  +P++   nk+dl +++ e   +ei  +  ++  + + + +saktG +++e le +v+kv + ++
  MMETSP1174-20130828|26316_1  58 DEFKLNVWDIGGQASIRPYWRNYFDNTDALVYVVDAADTRRgsesAQELQQL--LNESKLAGVPLLvfaNKMDLGNSMEEDEVSEILMMNDISdrEWHLLGCSAKTGDNLQEGLEWLVEKVNEAEE 181
                  6677777777777777766666777888889999999755410023444433..347889999986666*******9999888888665555500556788********************98765 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.8e-05     0.018     115     149 ..      13      47 ..       5      69 .. 0.83
   2 ?    4.6   0.0     0.012       3.8      21     112 ..      83     186 ..      65     190 .] 0.52

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.8e-05
    TIGR03596 115 kkkairalvvGiPNvGKStliNrlakkkvakvgnk 149
                  ++++ r+lv+G+ N GK t++ +++ +  a+ + +
  MMETSP1174-20130828|26316_1  13 TNNEARVLVLGLDNAGKTTILKKMSDEDPANIAPT 47 
                  47889*******************99888777655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.012
    TIGR03596  21 lvDvvievlDA...Riplssknpeleelvk.nk....prlivlnkaDladpektkkwlkyfe.....ekgkkalavnakkkkkvkkilkaikkllkekkeklkak 112
                  + D ++ v+DA   R   s + +el++l++ +k    p l+  nk+Dl ++ + ++  + +      +++ + l ++ak+++++++ l+ + + ++e +e  ++k
  MMETSP1174-20130828|26316_1  83 NTDALVYVVDAadtRRG-SESAQELQQLLNeSKlagvPLLVFANKMDLGNSMEEDEVSEILMmndisDREWHLLGCSAKTGDNLQEGLEWLVEKVNEAEELSESK 186
                  45555555555222322.223344555554222222266777788887776666666555441111133445666666666666665555555555555555555 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0015      0.48       2      28 ..      18      44 ..      17      60 .. 0.84
   2 !    9.3   0.0   0.00044      0.14      78     165 ..      82     178 ..      74     185 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0015
    TIGR00436  2 fvailGrpnvGKSTLlNkllgqkisiv 28
                 +v +lG  n+GK T+l k+ +++ + +
  MMETSP1174-20130828|26316_1 18 RVLVLGLDNAGKTTILKKMSDEDPANI 44
                 6789**************999887655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00044
    TIGR00436  78 sevdlilfvvdsdeknke...dellleklqklk...apvvlalnkldnk..ekdkllelidkeasllefk.eiveisalkgenveelkaiveaklre 165
                  ++ d +++vvd+ ++       + l++ l ++k    p ++  nk+d     +++++++i  ++ + + + + +  sa++g+n++e  + + +k++e
  MMETSP1174-20130828|26316_1  82 DNTDALVYVVDAADTRRGsesAQELQQLLNESKlagVPLLVFANKMDLGnsMEEDEVSEILMMNDISDREwHLLGCSAKTGDNLQEGLEWLVEKVNE 178
                  57799******987765422345677777777633357889999999653478889999999999999999************99866666666555 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.062        20      16      41 ..      14      39 ..       5      56 .. 0.80
   2 !   13.1   0.0     4e-05     0.013      90     181 ..      76     168 ..      68     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.062
    TIGR03598 16 dklpeiafaGrSNvGKSsliNaLtnr 41
                 ++ + + ++G  N+GK +++ ++ ++
  MMETSP1174-20130828|26316_1 14 NNEARVLVLGLDNAGKTTILKKMSDE 39
                 556788999**********9988765 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4e-05
    TIGR03598  90 lieeYLekrenLkgvvllvDirhelkelD..lellellkeakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieel 181
                    ++Y+ ++++L  vv   D+r++ ++    ++ll+  k a++p+lv ++K+D  ++ e ++ ++++    + ++++ ++l +S++++ +++e 
  MMETSP1174-20130828|26316_1  76 YWRNYFDNTDALVYVVDAADTRRGSESAQelQQLLNESKLAGVPLLVFANKMDLGNSMEEDE-VSEILMMNDISDREWHLLGCSAKTGDNLQEG 168
                  5689******************976544312567777777899999******9776665554.4444444444455668999999999888875 PP

>> TIGR01540  portal_PBSX: phage portal protein, PBSX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.7e-05     0.024     161     216 ..      68     123 ..      59     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.7e-05
    TIGR01540 161 llarkaeefnfkyfkngrhvgfiitvtdealseeeleelqekmndlksvgnirklf 216
                   ++ ++  + ++yf+n     +++   d     e+ +elq+ +n++k+ g    +f
  MMETSP1174-20130828|26316_1  68 GGQASIRPYWRNYFDNTDALVYVVDAADTRRGSESAQELQQLLNESKLAGVPLLVF 123
                  5677889999*************************************998755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 626.95
//
Query:       MMETSP1174-20130828|26320_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1183.64
//
Query:       MMETSP1174-20130828|26324_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 424.25
//
Query:       MMETSP1174-20130828|26326_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 504.39
//
Query:       MMETSP1174-20130828|26327_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 549.95
//
Query:       MMETSP1174-20130828|26328_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1174-20130828|26329_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 696.90
//
Query:       MMETSP1174-20130828|26331_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1422.18
//
Query:       MMETSP1174-20130828|26330_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-209  692.4   4.0   3.5e-209  692.2   2.7    1.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    5.5e-62  207.4   3.8    2.8e-60  201.8   2.7    2.6  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    2.8e-49  166.1   2.2    3.6e-49  165.8   1.5    1.1  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.6e-35  120.9   2.4      6e-35  119.1   1.7    1.9  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
      9e-31  104.5   1.4    1.1e-30  104.3   0.9    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.2e-28   98.1   0.5    5.4e-28   96.0   0.4    2.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.3e-18   63.0   2.0    8.1e-16   55.1   0.2    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    5.3e-18   62.5   0.5    8.1e-18   61.9   0.3    1.2  1  TIGR01393 lepA: GTP-binding protein LepA
    1.2e-16   58.4   8.0    4.1e-15   53.3   0.8    2.8  2  TIGR00487 IF-2: translation initiation factor IF-2
      9e-14   49.4   0.3    3.1e-13   47.7   0.2    1.8  1  TIGR00231 small_GTP: small GTP-binding protein domain
    5.3e-13   45.8   0.8    8.5e-13   45.1   0.0    1.5  2  TIGR00484 EF-G: translation elongation factor G
    1.5e-10   38.0   0.0    2.6e-10   37.1   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    2.2e-09   34.1   0.2    4.1e-09   33.2   0.1    1.3  1  TIGR00491 aIF-2: translation initiation factor aIF-2
  ------ inclusion threshold ------
      0.025   11.4   0.0      0.063   10.1   0.0    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  692.2   2.7  1.2e-211  3.5e-209       3     393 ..      31     425 .]      29     425 .] 0.98

  Alignments for each domain:
  == domain 1    score: 692.2 bits;  conditional E-value: 1.2e-211
    TIGR00485   3 kekferskphvnvgtighvdhgkttltaaittvlakegkaa..akkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkale..gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpegvemvlpgdnvkltvelispvaleeglrfaireggrtvgagvvskil 393
                  k +f+rskph+n+gtighvdhgkttltaai++vl++ g ++  +++y++idkapee+ar itint+hvey t++rhyahvdcpghadyvknmitgaaqmdg+ilvvsa+dgpmpqtrehillarqvg+p+lvvflnk+d vdd+ellelve+evrell+ y+fpgdd+pi+rgsal a++  + +  ++++l+lme+vde+i +p+r +dkpfl+++edvfsi+grgtv+tgrve+g++++g+evei+gl ++kkttvtgvemfkk ld+++agdn+g+llrg+k+++i+rgq+la pg++ + k+feae+yvl+++eggrhtpffs+yrpqf++rt+dvtg+i+lpeg+emvlpgdn++ltv+l + va+eeglrfairegg+tvgagvvski+
  MMETSP1174-20130828|26330_1  31 KVQFDRSKPHLNIGTIGHVDHGKTTLTAAISKVLKEAGVSDfeTQSYEDIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPNLVVFLNKCDAVDDDELLELVEMEVRELLDFYEFPGDDTPIIRGSALCAVNdtNPELGRDAVLKLMETVDEFIKEPTRLLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGDNKKTTVTGVEMFKKNLDRGQAGDNIGALLRGMKRDDIKRGQILAAPGTVVTAKDFEAEIYVLTQDEGGRHTPFFSNYRPQFFIRTADVTGSIQLPEGIEMVLPGDNTTLTVNLQHEVAVEEGLRFAIREGGKTVGAGVVSKII 425
                  678**********************************998622578*************************************************************************************************************************************954556689*************************************************************************************************************************************************************************************************************97 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   2.7   9.6e-63   2.8e-60       3     356 ..      36     370 ..      34     425 .] 0.79

  Alignments for each domain:
  == domain 1    score: 201.8 bits;  conditional E-value: 9.6e-63
    TIGR00483   3 kekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdk.leapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepag..vsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadnppkvakeftaqivvlqhpgaitvgytpvldahtaqvacrfvel 356
                  + k+hln+  ighvd+gk+tl+  +             k+ kea      +  +   +dk  eer r +ti+ +h  + t   + + vd+pgh d++knmitga+q d  +lvv+++dg    +pqtreh+llar +gi +l+v +nk d+v+ d+e  e +  ev ell    +  d+ ++i  sa+   n      +        l+e++d+ +++p ++ dkp+ + ++dv+si+g gtv  grve gv+++g++v +   g    + v  +em ++++++++ gdnig  +rg+ ++di+rg++   +     +ak+f+a+i vl         +tp +  +  q   r  ++
  MMETSP1174-20130828|26330_1  36 RSKPHLNIGTIGHVDHGKTTLTAAI------------SKVLKEAGVSDFETQSYE-DIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG---PMPQTREHILLARQVGIPNLVVFLNKCDAVD-DDELLELVEMEVRELLDFYEFPGDDTPIIRGSALCAVND--TNPELGRDAVLKLMETVDEfIKEPTRLLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGdnKKTTVTGVEMFKKNLDRGQAGDNIGALLRGMKRDDIKRGQILAAPGT-VVTAKDFEAEIYVLTQDE--GGRHTPFFSNYRPQFFIRTADV 370
                  679*****************98643............333344433333333333.38************************************************************9...99****************************8.56678888999******************9999976554..4445555567789****984699*****************************************9988872246889************************************987765.45689********97643..2234455444444433333222 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   1.5   1.2e-51   3.6e-49       2     258 ..      42     326 ..      41     347 .. 0.86

  Alignments for each domain:
  == domain 1    score: 165.8 bits;  conditional E-value: 1.2e-51
    TIGR00475   2 iiataGHvDHGKttLlkaltgid...............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvde.eevkevEeelkeileeeeflk.nakivkvsA...ktGqGieeLkkelknLlesldak..d....kqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepi..nkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRG.llil 258
                  +i+t GHvDHGKttL  a+  +                 d+ PeE+ R +ti+  +  ++  ++    +D PGH  ++kn+++g + +d+ +Lvv a +G+++qt+EH+++++++gi++l+v l+K D vd+ e+++ vE+e++e+l+ +ef   ++ i+  sA   ++    e  ++ +++L+e +d    +     +kp+ + ++ +F++ G Gtv tG + +G ++ g+e+ + ++  nkk  v  ++ ++++ +++ AG+ i+  l ++ ++++kRG +l  
  MMETSP1174-20130828|26330_1  42 NIGTIGHVDHGKTTLTAAISKVLkeagvsdfetqsyedIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPNLVVFLNKCDAVDDdELLELVEMEVRELLDFYEFPGdDTPIIRGSAlcaVNDTNPELGRDAVLKLMETVDEFikEptrlLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLgdNKKTTVTGVEMFKKNLDRGQAGDNIGALLRGMKRDDIKRGqIL-A 326
                  89**************9999876677777999999988899*****************************************************************************************87256789**************8515667777762214444444458999999999986421222225899***********************************9983357888***********************************433.3 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   1.7     2e-37     6e-35       3     328 ..      38     342 ..      36     414 .. 0.75

  Alignments for each domain:
  == domain 1    score: 119.1 bits;  conditional E-value: 2e-37
    TIGR03680   3 qpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenye.eikefvkgtv..aenapiiPvsalkkvn..........idvllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgkpgklppvreklelevk 328
                  +p++nig++GhvDhGkttl+ a++ v  +    +          y d+   k +e ++ +   ++++ e     t   r+ + vD+PGh   +  m++Gaa mdg +Lv++a++  P+pqt+eh+     +gi n+v+  nk d v+ ++ le  e e++e+++ +    +++pii  sal  vn          +  l+e+++++i++p r ldk++l++v   f +           G v  G + qG++++g+e+ei  G+  +k         +t+vt +e+ kk++++ + g  ++  + L   + ++D   Gq+++ pg++    +++e e+ 
  MMETSP1174-20130828|26330_1  38 KPHLNIGTIGHVDHGKTTLTAAISKVLKEAGVSDFET-----QSYEDI--DKAPEERARKITINTTHVE----YTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG-PMPQTREHILLARQVGIPNLVVFLNKCDAVDDDELLELVEmEVRELLDFYEfpGDDTPIIRGSALCAVNdtnpelgrdaVLKLMETVDEFIKEPTRLLDKPFLMSVEDVFSIAGR--------GTVATGRVEQGVINTGNEVEIL-GLGDNK---------KTTVTGVEMFKKNLDRGQAGDNIG--A-LLRGMKRDDIKRGQILAAPGTVVT-AKDFEAEIY 342
                  799*********************9987765555443.....246654..4555555433333333333....46789**********************************986.8************************************87658999999664448******9999888775556655444445889999************************875........5588999*************97.555554.........467777777777777777766544..3.334566666667777777777643.344555555 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.9   3.7e-33   1.1e-30       3     268 ..      42     305 ..      40     334 .. 0.83

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 3.7e-33
    TIGR01394   3 niaiiahvDhGkttl...vDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivv.inkiDrpdar..peevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGd 268
                  ni  i hvDhGkttl   + k+Lk++gv + +++ +   +D    er r iti +  +  +  + +   vD PGhaD+  ++      +dg +l+v a++Gp+pqtr  +  a ++g+  +vv +nk D  d +   e v  ev +L+   +   +  d p++ +sa   v  ++ e  ++ + +l++++ e +++P+   d+p+ + v  + + +  G +a+grve+G++++g++v++l   ++++ + ++ + +f    ++++d+ +aGd
  MMETSP1174-20130828|26330_1  42 NIGTIGHVDHGKTTLtaaISKVLKEAGVSDFETQ-SYEDIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPNLVVfLNKCDAVDDDelLELVEMEVRELLDFYEFPGD--DTPIIRGSALCAVNDTNPELGRDAVLKLMETVDEFIKEPTRLLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGDNKK-TTVTGVEMF----KKNLDRGQAGD 305
                  999***********95556788999996655555.5556899***********9988888888899*****************************************999999999998765538****876552268889999999887777666..679*****************************************************************************998765544.334444333....23444444444 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.4   1.9e-30   5.4e-28      56     318 ..      81     346 ..      41     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 1.9e-30
    TIGR02034  56 dGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaekl..gvsdvtviPlsalkGdnvveksesmpWyeGptllevletve..vee..saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlp..sgresrvarivtfdgelekaeaGeavtlvle..deidisrGdllaaadeapevadqfaaelvwlad 318
                  d    er + iti+ ++  ++t+ r++   d+PGh  y +nm+tga+ +d  +l+v a  G + qtr h ++a  +Gi ++v+ +nk d vd d e +e ++ + ++l         d+ +i  sal     +  +++ p      +l+++etv+  ++e  +  ++++ + v+ v          +G +  G +++G+ev +l   +++++ v+ +  f+++l++ +aG+ +   l+  +  di+rG++laa  +   +a++f+ae+  l++
  MMETSP1174-20130828|26330_1  81 DKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPNLVVFLNKCDAVDDD-ELLELVEMEVRELLDFYefPGDDTPIIRGSAL-----CAVNDTNPELGRDAVLKLMETVDefIKEptRLLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGlgDNKKTTVTGVEMFKKNLDRGQAGDNIGALLRgmKRDDIKRGQILAAPGT-VVTAKDFEAEIYVLTQ 346
                  555679*************************************************************************************976.57899998888876544113345555555555.....555555555555566666666643344422578999999999998777666667899*************97522778999********************9887633678*********9988.778999**99988765 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.2   2.8e-18   8.1e-16      20     162 ..      41     182 ..      30     189 .. 0.77
   2 !    7.5   0.1   0.00067       0.2     295     362 ..     248     315 ..     239     342 .. 0.68

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 2.8e-18
    TIGR00490  20 rnigivahidhgkttlsd...nllagagmiseelageqlfldfde..qeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenv.kpvlfinkvdrlinelkltaeel 162
                   nig + h+dhgkttl+    ++l  ag+   e    q + d+d+  +e++r iti+++ v    ey   +     +d pgh d+  ++      +dg i+vv+a +g mpqt   +  a +  + + v+f+nk d + ++  l+  e+
  MMETSP1174-20130828|26330_1  41 LNIGTIGHVDHGKTTLTAaisKVLKEAGVSDFE---TQSYEDIDKapEERARKITINTTHV----EYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIpNLVVFLNKCDAVDDDELLELVEM 182
                  59**************86222568889976655...46666666533899999***99988....57777777789************9999999******************77666665555525699*****98876544444444 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00067
    TIGR00490 295 tkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipag.nivavv.glk 362
                   ++      g va+gr+  g i+ g+ev +++  + ++    gv m  +    d+  ag ni a++ g+k
  MMETSP1174-20130828|26330_1 248 EDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGDNKKTTVTGVEMFKKN--LDRGQAGdNIGALLrGMK 315
                  55555556799******************998777777766777776554..455555536666543555 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.3   2.8e-20   8.1e-18       5     269 ..      42     321 ..      38     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 2.8e-20
    TIGR01393   5 nfsiiahidhGkstladrllektkavserelkeql...ldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdl.eiiPvinkidlPsad..vervkkeieeviGl.....daeeailvsaktGig..........ieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkv 269
                  n+  i h+dhGk+tl+  + +  k     +++ q    +d+   er r iti ++   ++y++++  +y    +d PGh+d+  ++    a  +G +l+v a+ G   qt  ++ la +  + +++  +nk d    d   e v+ e++e++ +     d + +i+ sa   ++          + +l+e++ + + +P+   ++p    + d +  a rG v+  rv +G i++g+++++l  g + + + +gv ++k++ ++     ++G l  g+k   d+k 
  MMETSP1174-20130828|26330_1  42 NIGTIGHVDHGKTTLTAAISKVLKEAGVSDFETQSyedIDKAPEERARKITINTTH--VEYTTAN-RHY--AHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIpNLVVFLNKCDAVDDDelLELVEMEVRELLDFyefpgDDTPIIRGSALCAVNdtnpelgrdaVLKLMETVDEFIKEPTRLLDKPFLMSVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGDNKKTTVTGVEMFKKNLDRGQAGDNIGALLRGMKR-DDIKR 321
                  8899***********99887777766666666666111555557888888887765..5787664.455..469*******************************************999884678889****9877644699999**99997633333455667666644332111222222377899999999*******************999************************998777776666666666655544444568999999885.45554 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.8   1.4e-17   4.1e-15      90     234 ..      43     207 ..      17     228 .. 0.74
   2 !    7.1   0.7    0.0014      0.41     496     576 ..     246     327 ..     220     336 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 1.4e-17
    TIGR00487  90 vtimGhvDhGktsLLdsirk....tkvaegeaGG...itq.........hiGayqvekedkk.kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvP.iivainkiDkpean..pDrvkqelseyglvpeewGGetifvpvsalk 234
                  +  +GhvDhGkt+L   i k    + v++ e+     i +          i   +ve+   + + + +D PGh+ + +    Ga   D  +lvv+a DG +pqt e i  a++ ++P ++v++nk D  + +   + v+ e+ e+    e  G +t ++  sal 
  MMETSP1174-20130828|26330_1  43 IGTIGHVDHGKTTLTAAISKvlkeAGVSDFETQSyedIDKapeerarkiTINTTHVEYTTANrHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPnLVVFLNKCDAVDDDelLELVEMEVRELLDFYEFPGDDTPIIRGSALC 207
                  4557**********9887651111455555543211122122222221135677787654433899************999************************************8899******87665336888999998877777778888899999875 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0014
    TIGR00487 496 evrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkddvkeveegyeCGivikny..ndikvGDiiea 576
                   v +vf+++  G++a + v++Gvi+ +n++++l  g    +  +  +  fk++    ++g + G  +  +  +dik G i+ a
  MMETSP1174-20130828|26330_1 246 SVEDVFSIAGRGTVATGRVEQGVINTGNEVEILGLGDN-KKTTVTGVEMFKKNLDRGQAGDNIGALLRGMkrDDIKRGQILAA 327
                  6999*****99********************9865444.35678889999999999999999999997652279999999876 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.2   1.1e-15   3.1e-13       5     130 ..      42     178 ..      39     190 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.1e-15
    TIGR00231   5 kivivGhvdvGKstLlnsllkn.kisiteskpgvtrdyvteqieedGkt..............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvp.iilvvnKiDlkd..dlkt 130
                  +i+ +Ghvd+GK+tL+  ++k  k + +++ ++ + +++ +  ee+  +                   +D +G++d+       v++    +  +d+ ilv+++ +g+++qt+e i  a++ g+p +++++nK+D +d  +l++
  MMETSP1174-20130828|26330_1  42 NIGTIGHVDHGKTTLTAAISKVlKEAGVSDFETQSYEDIDKAPEERARKitintthveyttanRHYAHVDCPGHADY-------VKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPnLVVFLNKCDAVDddELLE 178
                  89***************999863334444444555555555555555556677777777776678899*********.......************************************99**9456789******9754444 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   2.9e-15   8.5e-13      11     143 ..      41     174 ..      31     194 .. 0.81
   2 ?   -2.0   0.1      0.53   1.6e+02     325     375 ..     260     309 ..     250     337 .. 0.62

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 2.9e-15
    TIGR00484  11 rniGisahidaGktttterilfytgkihkigevh.dGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPr.ivfvnkmdkiGan 143
                   niG   h+d Gktt+t  i     ++  + + + +    +d    e+ r iti ++  + +  + +   +d PGh d+  ++      +dG ++v+ a  G  pq+      a++ ++P  +vf+nk+d +  +
  MMETSP1174-20130828|26330_1  41 LNIGTIGHVDHGKTTLTAAISKVLKEA-GVSDFEtQSYEDIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPNlVVFLNKCDAVDDD 174
                  59***************9885443333.333333145577899999999999998877777777899999**************************************************8357******98765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.53
    TIGR00484 325 tfvrvysGvlksGsevln..srkekkervgrlvkmhankreeieevraGd.iaa 375
                  +  rv +Gv+++G+ev       +kk  v+  v+m  +   +++  +aGd i a
  MMETSP1174-20130828|26330_1 260 ATGRVEQGVINTGNEVEIlgLGDNKKTTVTG-VEMFKK---NLDRGQAGDnIGA 309
                  5569999999999988641144556655554.566643...4566677763444 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     9e-13   2.6e-10      13     159 ..      42     183 ..      33     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 9e-13
    TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlp.iltflnkldrdirdplelldevene 159
                  ++  i h d Gkttlt  +    + ++eaG v    +q     d    e+ r i+i t+ +++   ++    +d pGh d+ ++     + +d  ++v+ a+ G   +tr  + ++r   +p ++ flnk d    d  ell+ ve e
  MMETSP1174-20130828|26330_1  42 NIGTIGHVDHGKTTLTAAI---SKVLKEAG-VSDFETQSYEDIDKAPEERARKITINTTHVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPnLVVFLNKCDAVDDD--ELLELVEME 183
                  566799**********987...68999999.556678888999****************************************************************************9994568****9964443..555544444 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.4e-11   4.1e-09       9     135 ..      45     172 ..      40     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.4e-11
    TIGR00491   9 vlGhvdhGkttlldkirktrvakreaGgi...tqhiG.aseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktP.fvvaankidrip 135
                   +GhvdhGkttl   i k   + +eaG     tq      + P +  ++++ +   +++          +d PGh  + +    G a  d  ilvv   +G  pqt e + + rq+ +P +vv  nk d ++
  MMETSP1174-20130828|26330_1  45 TIGHVDHGKTTLTAAISK---VLKEAGVSdfeTQSYEdIDKAPEERARKITINTT-HVEYTTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPnLVVFLNKCDAVD 172
                  68***********99976...4578886422255543145678888888887766.4555555667889*************************************************9557889**99875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00021     0.063     175     321 ..      40     193 ..      17     211 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00021
    TIGR03594 175 pikiaiiGrpNvGKStLvNallge.ervivsdiaGtTrDsidievevkgkkylliDT.....AGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegka.lvivvNKwDlvkdekeleelkkeleeklkflkf 321
                  +++i+ iG    GK tL+ a+ +  + + vsd      + id   e + +k+++  T        r+ ++v+       v++ ++  ++ d  +lv+ at+g   q  + + l+ + g + lv+ +NK+D+v+d++ le ++ e++e l+f +f
  MMETSP1174-20130828|26330_1  40 HLNIGTIGHVDHGKTTLTAAISKVlKEAGVSDFETQSYEDIDKAPEERARKITINTThveytTANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGIPnLVVFLNKCDAVDDDELLELVEMEVRELLDFYEF 193
                  467777777777777777777775244567777777777777777777777665432111113345555555544555566666667778888999999999988888888888888876378889******9999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.19s 00:00:00.83 Elapsed: 00:00:00.61
# Mc/sec: 919.60
//
Query:       MMETSP1174-20130828|26428_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|26564_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1174-20130828|26579_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 201.87
//
Query:       MMETSP1174-20130828|26586_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.48
# Mc/sec: 192.48
//
Query:       MMETSP1174-20130828|26595_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.38
# Mc/sec: 343.87
//
Query:       MMETSP1174-20130828|26606_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 203.33
//
Query:       MMETSP1174-20130828|26615_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-40  134.2   0.1    6.4e-40  134.0   0.1    1.0  1  TIGR01101 V_ATP_synt_F: V-type ATPase, F subunit


Domain annotation for each model (and alignments):
>> TIGR01101  V_ATP_synt_F: V-type ATPase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.1   1.6e-43   6.4e-40       3     114 ..       1     111 [.       1     115 [. 0.95

  Alignments for each domain:
  == domain 1    score: 134.0 bits;  conditional E-value: 1.6e-43
    TIGR01101   3 saakgkliavigdedtvvGfllgGiGeinknrepnflvvdkdttveeiedafkrflkrddidiilinqniaelirhavdahtasipavleipskdhpydaskdsilrrargl 114
                  +a  gkl+a+igdedtv+Gfll+GiG+   + + nflvv+ dt+   ie af+ +++r+d++i+linq+ia+ irh +  + ++ip++leipskd pyd+++d i++r++ +
  MMETSP1174-20130828|26615_1   1 MADIGKLVAIIGDEDTVTGFLLAGIGQR-SAENSNFLVVKPDTARPVIEGAFNALVEREDVGIVLINQHIANEIRHLLKDYDKTIPTILEIPSKDSPYDPEQDYIMQRVNMI 111
                  57789*********************96.56789**************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 413.80
//
Query:       MMETSP1174-20130828|26641_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 297.82
//
Query:       MMETSP1174-20130828|26670_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1066.07
//
Query:       MMETSP1174-20130828|26718_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|26720_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 207.81
//
Query:       MMETSP1174-20130828|26738_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-17   59.2   7.6    6.2e-17   59.0   5.3    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
    0.00061   16.2   4.1     0.0007   16.0   2.9    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
  ------ inclusion threshold ------
       0.13   10.2   5.2       0.22    9.5   0.1    2.6  2  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   5.3   4.5e-20   6.2e-17     481     595 ..       2     123 ..       1     124 [. 0.86

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 4.5e-20
    TIGR02350 481 dkatgkeqsititas.sglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag....dkleeeekekiekaveelkealkeedv..eekikakteelekaleklaealy 595
                  dk+tgk ++itita+ + lsee+iermv+eae++aeedk  k +++a+n ++ ++y+ ++t+++ +    dkl++e+k+++++ ++e+ + l+e+    +e+ ++k++e+e++++ ++++ly
  MMETSP1174-20130828|26738_1   2 DKGTGKAETITITAEkGRLSEEDIERMVREAEEFAEEDKMVKARIDAKNGLEGYLYNLKNTIEDDEkglsDKLSDEDKDELDSIINEALDWLDENPEadAEDYEEKQKEVEQVANPIMRELY 123
                  99**********975267********************************************9865233378999***********999988776431134599999999999999998877 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.9   5.1e-07    0.0007     473     582 ..       3     120 ..       1     128 [. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.1e-07
    TIGR01991 473 kltgveakievkpsy.gLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkd....Llseeelkaikaaleklekale...eddaeaikaaiealeeaskefaa 582
                  k tg+ ++i++      Ls+e+ie+m++++ + aeeD+ ++a+ ++k   e  l  l++++++d++     ls e++ ++++ ++++ + l+   e dae+ +++ +++e++++ +++
  MMETSP1174-20130828|26738_1   3 KGTGKAETITITAEKgRLSEEDIERMVREAEEFAEEDKMVKARIDAKNGLEGYLYNLKNTIEDDEKglsdKLSDEDKDELDSIINEALDWLDenpEADAEDYEEKQKEVEQVANPIMR 120
                  56889999999876526******************************99999*********999762111466677777777777766655511146788888888899988887665 PP

>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00016      0.22      10      32 ..      20      42 ..      17      44 .. 0.90
   2 ?    1.4   1.2     0.056        76       6      21 ..      70      88 ..      65     100 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00016
    TIGR01639 10 ltkEelnelinsLdeivnrndml 32
                 l++E++++++++  e+ +  +m 
  MMETSP1174-20130828|26738_1 20 LSEEDIERMVREAEEFAEEDKMV 42
                 9**************99999986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.056
    TIGR01639  6 lskkltkEe...lnelins 21
                 ls+kl++E+   l+ +in+
  MMETSP1174-20130828|26738_1 70 LSDKLSDEDkdeLDSIINE 88
                 8999999963335555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 476.45
//
Query:       MMETSP1174-20130828|26742_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 819.24
//
Query:       MMETSP1174-20130828|26773_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|26791_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.87
# Mc/sec: 127.44
//
Query:       MMETSP1174-20130828|26805_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.4   0.6      0.012   12.3   0.4    1.2  1  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   2.8e-06     0.012     164     246 ..      35     117 ..       3     209 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-06
    TIGR00054 164 dvrkqlaekagevsveilaere.nitleeekelkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvke 246
                  ++ +++ ++a e  +ei ++ + ++tle+++ ++e + +i++  s+  + ++  +  +   Dki k   ek++++++lv  + e
  MMETSP1174-20130828|26805_1  35 QMVNFILQEAHEKANEIQVKSDhDFTLEKQLLVREAKQRINVEYSQK-ERDREVQQRIDRADKITKAKTEKMRERQTLVEELLE 117
                  34456777778888888887765799999999999999999999888.455555589*********************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       380  (0.0926377); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 673.99
//
Query:       MMETSP1174-20130828|26824_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.45
# Mc/sec: 164.25
//
Query:       MMETSP1174-20130828|26853_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 679.60
//
Query:       MMETSP1174-20130828|26888_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1174-20130828|26952_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|26956_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   24.1   0.0    1.3e-06   24.1   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.3e-10   1.3e-06      11      92 ..       3      82 ..       1      83 [] 0.74

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.3e-10
    TIGR02025 11 qlnaalsraaaelnreldlaadleivaleelke.kekleevekaikeadllfvsllfledqvrklkevlseerqvkavvvves 92
                 ++n al+raa+   + +   a+++i +++ ++   ++ +++e+a++eadl+f+sl+f+ dqv++lke+++    v++++v+es
  MMETSP1174-20130828|26956_1  3 SFNLALYRAASREVELMLEPASVDILVFSGRDVfGDRKSQLEDALSEADLFFGSLIFDFDQVEWLKERIAG---VETRFVFES 82
                 56666666665544444455667777777666513556789****************************98...558888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1174-20130828|26988_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 1271.26
//
Query:       MMETSP1174-20130828|27072_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1174-20130828|27084_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1174-20130828|27103_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 737.32
//
Query:       MMETSP1174-20130828|27123_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1487.88
//
Query:       MMETSP1174-20130828|27134_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 411.20
//
Query:       MMETSP1174-20130828|27141_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 250.78
//
Query:       MMETSP1174-20130828|27144_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|27209_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|27249_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|27276_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 185.50
//
Query:       MMETSP1174-20130828|27330_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   10.5   0.3      0.095    9.3   0.0    1.6  2  TIGR03394 indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03394  indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1     0.076   3.1e+02     492     510 ..      48      66 ..      11      88 .. 0.62
   2 ?    9.3   0.0   2.3e-05     0.095       2      33 ..     247     278 ..     246     282 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.076
    TIGR03394 492 rvatraelaaaldkavaer 510
                  r a  aela  l k v++r
  MMETSP1174-20130828|27330_1  48 RKADLAELAEKLGKEVEDR 66 
                  4444455555555555444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 2.3e-05
    TIGR03394   2 laealldalkdrgakevfgipgdfalpffkvi 33 
                  l +all alk+  +++ fg pg++ l f  v+
  MMETSP1174-20130828|27330_1 247 LMDALLVALKKSTTQATFGEPGEYGLTFGEVV 278
                  789************************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.72
# Mc/sec: 608.62
//
Query:       MMETSP1174-20130828|27349_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|27350_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    3.8   9.2        7.7    2.7   6.1    1.7  2  TIGR03734 PRTRC_parB: PRTRC system ParB family protein


Domain annotation for each model (and alignments):
>> TIGR03734  PRTRC_parB: PRTRC system ParB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   6.1    0.0019       7.7     268     298 ..       9      39 ..       4      55 .. 0.81
   2 ?    0.4   0.4    0.0097        40     279     291 ..      47      59 ..      33      61 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0019
    TIGR03734 268 laadgekGvGeeQataCrsCedfGaavsalp 298
                  l+ d  +G G    +aC++C+++G      p
  MMETSP1174-20130828|27350_1   9 LKRDCPQGGGGGREKACHTCGEYGHLKRDCP 39 
                  7889999*****************7655555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.0097
    TIGR03734 279 eQataCrsCedfG 291
                  +  +aC++C++ G
  MMETSP1174-20130828|27350_1  47 DSDKACHTCGEIG 59 
                  3468*****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 193.38
//
Query:       MMETSP1174-20130828|27439_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 267.75
//
Query:       MMETSP1174-20130828|27476_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 370.42
//
Query:       MMETSP1174-20130828|27510_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 224.38
//
Query:       MMETSP1174-20130828|27538_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|27573_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|27594_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|27616_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|27617_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 205.00
//
Query:       MMETSP1174-20130828|27664_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.53
# Mc/sec: 122.03
//
Query:       MMETSP1174-20130828|27683_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|27719_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 316.08
//
Query:       MMETSP1174-20130828|27723_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.47
# Mc/sec: 146.03
//
Query:       MMETSP1174-20130828|27728_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|27806_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-09   34.9   0.0    3.1e-09   34.9   0.0    1.0  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   7.5e-13   3.1e-09      21      73 ..       3      56 ..       1      58 [] 0.94

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 7.5e-13
    TIGR00229 21 vdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlege 73
                 vde+G+++ +N+ ++ ++GY+ e+ +Gr++ + +i +++r  v+e++ ++l+g 
  MMETSP1174-20130828|27806_1  3 VDENGKVTVWNKCAKILTGYTVEDTMGRHLVQdFIIPDYRTSVQEVLDKALQGS 56
                 8******************************99******************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 239.23
//
Query:       MMETSP1174-20130828|27822_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|27854_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|27856_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1174-20130828|27916_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|27941_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1174-20130828|27944_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 291.98
//
Query:       MMETSP1174-20130828|27965_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|28025_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1174-20130828|28050_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|28052_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 747.94
//
Query:       MMETSP1174-20130828|28061_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.43
# Mc/sec: 159.61
//
Query:       MMETSP1174-20130828|28089_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       394  (0.0960507); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|28106_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.47
# Mc/sec: 224.66
//
Query:       MMETSP1174-20130828|28113_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1174-20130828|28119_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 556.24
//
Query:       MMETSP1174-20130828|28186_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|28192_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1174-20130828|28194_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|28224_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|28238_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.4   8.7      0.019   13.2   6.0    2.0  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   6.0   4.6e-06     0.019       8     105 .]      22     116 ..      14     116 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.6e-06
    TIGR03685   8 LllheagkeineenlkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                  L+  ++  +i+een+++v++a G +v    v    + Le+      ++k  + p +  ++      aa+ + +++eee++e+eeeee ++ g  ++FG
  MMETSP1174-20130828|28238_1  22 LVCADSSADISEENMNAVIKASGNSVAAHWVPVFASCLEKTG---GVSKFLVGPGSGGGGGGGGGGAAAGAPAAAEEEKKEEEEEEEIDMGGGMDMFG 116
                  66678899******************************9974...44555555544444444444444444444434444445555566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 536.47
//
Query:       MMETSP1174-20130828|28341_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 382.07
//
Query:       MMETSP1174-20130828|28468_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   16.6   0.4      0.032   12.4   0.0    2.2  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.8e-06     0.032      34      47 ..      23      36 ..       5      38 .. 0.81
   2 !    2.6   0.1    0.0089        37       9      13 ..      53      57 ..      45      67 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-06
    TIGR04165 34 vgeikCskCGyvFe 47
                 +ge +C +CGy++ 
  MMETSP1174-20130828|28468_1 23 TGEWVCADCGYIYD 36
                 7999********95 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0089
    TIGR04165  9 kCPkC 13
                 kCP+C
  MMETSP1174-20130828|28468_1 53 KCPQC 57
                 67777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 371.00
//
Query:       MMETSP1174-20130828|28477_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1174-20130828|28483_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-26   88.5   8.2    1.4e-24   84.7   5.7    2.0  1  TIGR00855 L12: ribosomal protein L7/L12


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   5.7   3.4e-28   1.4e-24       9     124 ..      69     201 ..      62     202 .] 0.75

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 3.4e-28
    TIGR00855   9 iiealkeltvlelselvkalEekfgvs..........Aaaavaaaaaaaaa......aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvev 124
                  + ++l +l+v+e+++lv+++ ek g s          A + +aaa+++a a       eaa ek+ fd++l    a++ki+vik+vr itGlgLkEAk+lve+aPk++k+++ske  eel +kl+++ a v +
  MMETSP1174-20130828|28483_1  69 LCDELCSLNVIEMNDLVSTFKEKVGLSdmdvmpmmgaAMPNMAAAPMGAPAvdaapeEEAAPEKAFFDLKLLgFDAKSKIKVIKEVRAITGLGLKEAKDLVEGAPKTIKKELSKEAGEELLAKLKAVDADVSL 201
                  567788888888888888888888876333333333211222333333322333346677889999*****9556777***************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.57
# Mc/sec: 459.69
//
Query:       MMETSP1174-20130828|28499_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|28530_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-17   61.7   3.2    1.6e-17   61.4   2.2    1.1  1  TIGR00116 tsf: translation elongation factor Ts
  ------ inclusion threshold ------
      0.017   13.2   0.1       0.02   12.9   0.1    1.1  1  TIGR00264 TIGR00264: alpha-NAC homolog


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   2.2     8e-21   1.6e-17       3      51 ..      64     112 ..      62     113 .] 0.97

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 8e-21
    TIGR00116   3 aisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaak 51 
                  +isa++vk LR++tdA+mm Ck+ALve++gD+e A+++lR kG+a+aak
  MMETSP1174-20130828|28530_1  64 KISAKDVKALRDETDAAMMKCKQALVESDGDIEAAKEWLRAKGLASAAK 112
                  79**********************************************9 PP

>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05      0.02      72     110 ..      60      98 ..      42     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1e-05
    TIGR00264  72 eeeeeiseddielvmkqanvskeearraleeagGdlaea 110
                  e+  +is +d++ + + +++   + ++al e++Gd+  a
  MMETSP1174-20130828|28530_1  60 EAAVKISAKDVKALRDETDAAMMKCKQALVESDGDIEAA 98 
                  56679******************************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 481.12
//
Query:       MMETSP1174-20130828|28584_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-16   57.6   0.0    3.4e-16   57.0   0.0    1.2  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
  ------ inclusion threshold ------
      0.018   12.0   0.1        1.1    6.1   0.0    2.9  3  TIGR03722 arch_KAE1: universal archaeal protein Kae1


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.7e-19   3.4e-16      52     296 ..     140     387 ..     129     405 .. 0.78

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.7e-19
    TIGR00747  52 sslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDl..sAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDR.gtcv...lFgDGagavvvgeseeegeilsvelgadgekgellrlp.aaekraekekeekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvkt...vekygntsAasiplaldelleeg 296
                    l +e +kkAi++A+l+++di  ++v   +  ++ P   + + +++g+   +   l    +Ca  + ++ v+ +y +s   k +Lv  +e  s  + ++D  + ++   +F+DG +a+v+g  + +     +  +a  +++  l+   ++ ++ +    ++    +   k + ++ +++++  v++ l++ ++kked+d+   H    Riie +++ l l+ee+   +   +++ygn    s+   l+ +++e+
  MMETSP1174-20130828|28584_1 140 VPLVTEVCKKAIKDAGLNVEDIGKLVVVSST-GFIGPGLDCHIIQEVGLSRGVDRALigFMGCAAAMNGFRVGMDYCRSH-EKAALVCCVEISSVHTTFDDNiNDAIlhaIFADGCAAAVLGGRTAKT--APTGSFAIVDDHAWLMEGtEDGITLS---INETGISCKLSKYLPQYIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSwevLDNYGNMLSPSVMFVLELVMKEH 387
                  5578999***************999887655.6789************99866444411578999999999*******96.578999999999988877775233442337**********9877555..55555555565666655503333433...4444444555688999*************************************************98654222788*****999999888777665 PP

>> TIGR03722  arch_KAE1: universal archaeal protein Kae1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.014        29     185     217 ..      15      47 ..       6      72 .. 0.80
   2 ?    6.1   0.0   0.00052       1.1      50     109 ..     143     203 ..     135     223 .. 0.85
   3 ?   -0.2   0.0     0.045        92       7      75 ..     265     338 ..     260     340 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.014
    TIGR03722 185 lielPyvvkGmdlsfsGlltaalralkkgakle 217
                   +elPy v G  +++s  l +  +++ +++++ 
  MMETSP1174-20130828|28584_1  15 PVELPYLVAGAAVALSTYLMMQPNKAATKEEVY 47 
                  689***********9987776666666555555 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00052
    TIGR03722  50 ikkvlkealeeakvsledid.avafsqGPGlgPaLrvvataaraLalklekplvgvnhava 109
                  +++v k+a+++a++++edi  +v +s+   +gP L         L+  ++  l+g   + a
  MMETSP1174-20130828|28584_1 143 VTEVCKKAIKDAGLNVEDIGkLVVVSSTGFIGPGLDCHIIQEVGLSRGVDRALIGFMGCAA 203
                  68999**************725666777679****99999999999999999999877766 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.045
    TIGR03722   7 tahtlgvgivdeekeilan..vkktyvpekgGihPr...eaaehhaeaikkvlkealeeakvsledidavafsq 75 
                  ta t + +ivd+++ ++       t+  ++ Gi  +      ++ a++++  + + l + +++ ed+d  a+  
  MMETSP1174-20130828|28584_1 265 TAPTGSFAIVDDHAWLMEGteDGITLSINETGISCKlskYLPQYIAKNMAGYVDSFLAKHDMKKEDVDFWAVHP 338
                  77777888888766665431144567778889876511145789999999999***************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1539.87
//
Query:       MMETSP1174-20130828|28604_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1174-20130828|28657_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 229.41
//
Query:       MMETSP1174-20130828|28671_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|28684_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|28702_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 314.04
//
Query:       MMETSP1174-20130828|28755_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|28795_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 311.97
//
Query:       MMETSP1174-20130828|28796_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 576.98
//
Query:       MMETSP1174-20130828|28800_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.6   0.1      0.013   12.4   0.1    1.0  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.2e-06     0.013      26      69 ..      14      57 ..       2      60 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.2e-06
    TIGR02748 26 aeaevlkeaalellkaGGkrirPvfvllagklgdydldklkkva 69
                  +++ l++a   + kaG   i+ +  ll  k+g+ +l+ +k v 
  MMETSP1174-20130828|28800_1 14 VDQKQLNDANAVIQKAGNDEIQQLKALLDEKVGQKQLNDVKDVM 57
                 567889***********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|28794_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-72  241.7   0.0    2.7e-72  241.3   0.0    1.1  1  TIGR00535 SAM_DCase: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00535  SAM_DCase: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.3   0.0   6.7e-76   2.7e-72       1     289 [.      69     350 ..      69     365 .. 0.91

  Alignments for each domain:
  == domain 1    score: 241.3 bits;  conditional E-value: 6.7e-76
    TIGR00535   1 feGaeklLeitffeakksvdeekgLRalsreqldeiLdlakCeilsskknke..lDsyvLsesslfiidikiilktCGttklLlalpkilqlaeklssllkvksvkYsRksflfPsaqaalhrnfseevevLdkffdkg.....kayvlGdnaks.qkWhlYvaeteretpkeedpdetlevlmteLdkekaskfvkssaasttnlakemtkssgideiipesaeisDldfePCGYsmnaila.ekaystihvtPekgfsyasfesniidqkkldysdlvkrvLrvfePsefsvtvfa 289
                  feG+ek Lei f  +   v +  g Ral+r+ l++i   a+C+i+s  +n +  lD+yvLsesslf++ +++i+ktCG t lL++l+  +qla +l + l+++ v YsRk+f fP+ q ++h +f+ee  ++ +  +       +++v G  a + +kW l+ + + ++      p++ ++++m ++ +++a+ f   + ++    +k+mt+ +gid+++p   ei D  f+PCGYsmnai + + ay+tihvtPe   syasfe+n   +  + ysd++k+vL vf+P++f +t++ 
  MMETSP1174-20130828|28794_1  69 FEGPEKNLEICFKTS---VGNPEGCRALPRDALNAICTAAQCTIISCISNADhaLDAYVLSESSLFVFTHRMIIKTCGRTSLLRCLEITIQLALELCG-LELEWVGYSRKNFTFPEEQVYPHSSFQEEFTYVSNCPSLHalgptNSWVSGPDAGEeDKWILFNVGKWPTC----SPTVRINLMMFDMSPDVANSFYMMNCED----GKKMTHMTGIDKLVPG-YEIDDRAFDPCGYSMNAIGTnDGAYATIHVTPEPECSYASFETN---AIMTSYSDMMKNVLGVFQPKRFFLTIMG 350
                  9***********655...55699***********************988764449**************************************99996.689*****************************9876432234677******8876659*****99988777....699*******************999997....***************8.******************87588*********************...67899********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.47
# Mc/sec: 1151.39
//
Query:       MMETSP1174-20130828|28801_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 331.76
//
Query:       MMETSP1174-20130828|28803_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.62
# Mc/sec: 149.02
//
Query:       MMETSP1174-20130828|28797_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 841.88
//
Query:       MMETSP1174-20130828|28804_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 192.91
//
Query:       MMETSP1174-20130828|28807_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|28806_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 527.96
//
Query:       MMETSP1174-20130828|28811_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1174-20130828|28810_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-46  155.1   0.0    4.5e-46  155.0   0.0    1.0  1  TIGR01091 upp: uracil phosphoribosyltransferase
    0.00051   17.7   0.0       0.43    8.2   0.0    2.1  2  TIGR00336 pyrE: orotate phosphoribosyltransferase
  ------ inclusion threshold ------
      0.024   11.3   0.1      0.048   10.4   0.0    1.5  2  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
      0.041   11.8   0.1      0.066   11.1   0.0    1.3  1  TIGR01090 apt: adenine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   4.3e-49   4.5e-46       2     206 ..      14     223 .]      13     223 .] 0.94

  Alignments for each domain:
  == domain 1    score: 155.0 bits;  conditional E-value: 4.3e-49
    TIGR01091   2 vkviehpLikhkltvlRdketetkefrellkelgsllayeatkdleleevevetplgeak.akelkdkkvvlvpiLrAglglvegvlkllpeakvglvglkRdeet..lkievyysklpedieerevivlDPmlAtGgtvvealellkekgakk..ikvlsivaapeglekvekahpdveiyvaaidekLnekgYIvPGLGDaGDrafgt 206
                  v+v++    +h  t++Rd+et++k+f    +++ +lla e++ +l + e++v    + a+ + +  + k++ v+i+rAg +l+e++ ++ p+ +vg + ++Rde t    ++ +y klp  i+e ev+++DPmlAtGg++  a++ l ++g++   i + ++++ p gl+++  a+p +++ +a++d +Lne++YIvPGLGD GDr f+t
  MMETSP1174-20130828|28810_1  14 VHVMNSRALNHLFTKIRDEETSSKDFAFFSTRIMRLLAEEVIGTLAVTEKTVTCAGTGATfVGSTVPDKICAVSIIRAGDSLLEAFRTCSPDLSVGKILIQRDESTeeKLPRLFYCKLPPGITEMEVLLVDPMLATGGSAKMAVQCLVDAGVDParIIFANVISCPLGLQALTAAYPSLRVITACVDLELNEDKYIVPGLGDYGDRFFNT 223
                  6788888899******************************************98765555156777888*************************************7666899*************************************987667****************************************************86 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00042      0.43      90     158 ..      63     125 ..      46     137 .. 0.75
   2 !    7.7   0.0   0.00059      0.61     110     142 ..     139     171 ..     133     177 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00042
    TIGR00336  90 keaKdhGeggkivGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevek 158
                  k +   G+g++ vG++ ++ k+  v  +i +G s+lea++  +  + +v ++++  +r+e s+ee++ +
  MMETSP1174-20130828|28810_1  63 KTVTCAGTGATFVGSTVPD-KICAVS-IIRAGDSLLEAFRTCSP-DLSVGKILI--QRDE-STEEKLPR 125
                  5666679***********9.999885.9***********99874.456666554..4555.55555555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00059
    TIGR00336 110 kvvvveDvittGtsileaveaiqeagaevagvi 142
                   v++v+ +++tG+s++ av+ +  ag   a +i
  MMETSP1174-20130828|28810_1 139 EVLLVDPMLATGGSAKMAVQCLVDAGVDPARII 171
                  69********************99998766655 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.82   8.4e+02     253     273 ..      45      61 ..      39      73 .. 0.51
   2 ?   10.4   0.0   4.7e-05     0.048     209     239 ..     136     166 ..     128     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.82
    TIGR01251 253 dAlerlaeagveevivtntil 273
                  +    + +  +eevi+t ++ 
  MMETSP1174-20130828|28810_1  45 R----IMRLLAEEVIGTLAVT 61 
                  3....3333344444444433 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.7e-05
    TIGR01251 209 egkdvvivDDiisTggTlvkaaelLkekGAk 239
                   + +v++vD +++Tgg+   a++ L ++G  
  MMETSP1174-20130828|28810_1 136 TEMEVLLVDPMLATGGSAKMAVQCLVDAGVD 166
                  5679***********************9964 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-05     0.066     110     136 ..     138     164 ..     134     190 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.4e-05
    TIGR01090 110 krvlivDDllAtgGtveAaleLikklg 136
                    vl+vD +lAtgG+++ a++ +   g
  MMETSP1174-20130828|28810_1 138 MEVLLVDPMLATGGSAKMAVQCLVDAG 164
                  579*************98887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 840.96
//
Query:       MMETSP1174-20130828|28808_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.49
# Mc/sec: 414.82
//
Query:       MMETSP1174-20130828|28816_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1152.23
//
Query:       MMETSP1174-20130828|28820_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|28815_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-279  924.5   5.8   3.8e-279  924.3   4.0    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   6.6e-158  524.5   1.5   7.6e-158  524.3   1.0    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
     8e-121  401.7   2.4   9.6e-121  401.5   1.6    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   9.1e-115  382.1   3.6   1.1e-114  381.8   2.5    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   1.5e-111  371.3   2.1   1.9e-111  371.0   1.5    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   5.1e-107  356.6   1.7   5.9e-107  356.4   1.2    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    5.7e-94  313.3   1.4    6.8e-94  313.0   1.0    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.8e-90  301.8   2.3    2.3e-90  301.5   1.6    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    3.3e-82  274.6   1.7      4e-82  274.3   1.2    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.5e-20   71.0   1.0    1.8e-10   37.7   0.1    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  924.3   4.0  9.3e-282  3.8e-279       1     526 []       4     528 ..       4     528 .. 1.00

  Alignments for each domain:
  == domain 1    score: 924.3 bits;  conditional E-value: 9.3e-282
    TIGR02344   1 pvlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsGvkkk 526
                  pv+vln+ntkre+Gr aq++ni+aakavadiirttlGp++mlkmlldp+Ggiv+tndGn+ilre+dv+hpaaks+ielsr+qdeevGdGttsviil+Ge l  +++++e+nihptviv++y kal ++l+v+++++ pvd++d++++++lv+s+igtkf+srw+  ++++al+av  v ++++ g+k evd+kry kvekipGGe++d++vlkGv++nkdvth+kmrr+ie pri+lldcpleykkgesq+nvei+keedw++ll++eee+++++c++i+av pd+vitekG+sdlaqhyl+kani+a+rr+rktdnnr+ar+  ativ+r++e++esdvGtg+Glfev+kiGdeyftfl+ec dpkactillrGaskdvlne+ernl+da++v+rnv++ep l+pGGGate+a++++l++ a++le+v+q+py a+++aleviprtl +ncG+nvirtlt+lrakh++ e++++G+dG+tGki+dm+  giwep++vk+qt+ktaiesa ++lriddivsG+kk+
  MMETSP1174-20130828|28815_1   4 PVMVLNANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDIHDNKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQDRGAGQK-EVDVKRYCKVEKIPGGELTDCRVLKGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTGCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVSGMKKQ 528
                  89****************************************************************************************************************************************************************************************9.************************************************************************************************************************************************************************************************************************************************************************************************************************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  524.3   1.0  1.9e-160  7.6e-158       1     519 [.       4     523 ..       4     525 .. 0.99

  Alignments for each domain:
  == domain 1    score: 524.3 bits;  conditional E-value: 1.9e-160
    TIGR02339   1 pvlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldn.ikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGe.aelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  pv++l+ +t+r++gr a+  ni aakava+++++tlGPr + kmL+d++G +++tnDG  il+e+d+ hPaak ++e +++qdeevgDGtt++++l+Ge l  +++ +e++ihPtviv+Gy ka  + l+v ++ia+ +d +d++++++++e+++ +k++ ++   +l+++++eav +v++ r  g+ +vd+++  k+ek  Gg+++d ++++G++ +k+v+h++m +r+e+++i+lld ple +k e +a+++it+ +   + l  ee+++++m  +i+++  ++vi++kgi dlaqhyl+k+ i a+rr +k D +++ara+ a ivs  +ei+esd+G+  +l e rk+g++  +f+e+++++ka tillrG ++ v++e+eR l+Da++v+++v+ ++++++GgGa+e+++ ++l   a+++e  +q    a   ale ipr+l+en G + i +l++lRakh + +n n gvd +tg+i+dm  lg++ep  vk q+ k+a e+a++ilriDd+++
  MMETSP1174-20130828|28815_1   4 PVMVLNANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDIHDNKQMTELVESAIGTKFS-SRWGGHLIQIALEAVLRVIQDRGAGQKEVDVKRyCKVEKIPGGELTDCRVLKGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTgCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  89**************************************************************************************************************************************************************.6999**************************98648*************************************************************************************************************************************************846899****************************************************************************************************************************************************************************86 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.5   1.6  2.3e-123  9.6e-121       2     519 ..       3     523 ..       2     527 .. 0.94

  Alignments for each domain:
  == domain 1    score: 401.5 bits;  conditional E-value: 2.3e-123
    TIGR02345   2 ptivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.......liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGk.calfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                   ++++l+  t    G++  + ni+a++a+a+i++ttlGPr m k++ +     v++ndG  il+++d+ hPaak +++++++qd+evGdGttsv++l+ge l  ++++ie ++hp +i+ ++ +al   ++  k+ia  +d ++    + + +l + a+ +k  ++   ++ ++ ++avl++ +d    +          v k+ GG l+d  ++kGv f+k  +   + +  ++++ P+illl+  le+k  + +a++ +++ ed+ +++  e + i +   +iv+   ++v++++ i dla  y+++ +i +  r+ + d +rv++a+ a+i+s  ++++++ +G+ c+lfe ++iG e + +++++ + kact++lrG+++++l+e+er lhda+ ++r  + +  +++GGGa+e+ + + l + + ++++ qq    a+++aleviPr+l+en G + i++l +lr+kh+  ++++ Gvd  t +i+d+    +weP +vk+ ++k+a+e+a++il +d+ + 
  MMETSP1174-20130828|28815_1   3 APVMVLNANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGgIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDIHD---NKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQDRGAGQkevdvkrYCKVEKIPGGELTDCRVLKGVMFNKDVT---HSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTgCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  578999999**********************************999988775889*********************************************************************************99998422...34455666677777777777778888888888887766543222344555677889*******************988...567889*************************************************************************************************************************************************************************************************************************************************999*********************************************9886 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.8   2.5  2.8e-117  1.1e-114      17     530 ..       9     523 ..       2     525 .. 0.96

  Alignments for each domain:
  == domain 1    score: 381.8 bits;  conditional E-value: 2.8e-117
    TIGR02343  17 qdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavad...lerkdvdfd.likvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGk.aklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  + + kr  G  a+  ni aakava i+rt+lGp+ + k+l+++ g i++tndG  il+++d+ ++ ak ++els++qdee+GdGtt+v++l++  l  +++ +++ ihp  i  G+ ka+ + ++  ++ia+ +++  ++++++ + + +++g+k  s+   +l +ia +avl v++     +k+vd++   kve+  Gg+l d++++kG++ +kd++h +m++++++ +i +l cp+e  k  ++ +++i++ e++++l + e+e+ e+m  +i  +  ++vi + G  d a h l ++++ a r +  ++ + +a a +  iv+r +e++e+++G+ ++l + +++G  ++ + ++e++++ ka til+rG++k +++e +r lhda+ v+rn++ +  ++ GGGa+e+a+  ++ + a  l+ v+q    a ++ale ip +l+en G + i tl++++ak  + +n++ Gvd  +   +dm  l + e+++ k q ++ a +  +mil+idd++s
  MMETSP1174-20130828|28815_1   9 NANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDI--HDNKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQdrgAGQKEVDVKrYCKVEKIPGGELTDCRVLKGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTgCGLFEVRKIG--DEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  457899******************************************************************************************************************************9998..45566788888999**********************9852224689999973689************************************************************************************************************************************************945666667787..5678999*************************************************************************************************************************99************************************97 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.0   1.5  4.5e-114  1.9e-111       4     515 ..      14     523 ..      11     525 .. 0.94

  Alignments for each domain:
  == domain 1    score: 371.0 bits;  conditional E-value: 4.5e-114
    TIGR02342   4 kekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvids..ekdknvdlkdikvvkkl.GgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGe.ktaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  +e  +  ++ ni+aakavad+irt+lGp+ m k++ +  G +++tndG+ il++++v hpaak ++els+aqd e GdGttsv++l+G  l  +++ +e++ihpt+i  ++ +a+++ l++ k++++pvd+ d++++ + +++++ +k  s++   l  +a +avl+vi+   + +k+vd+k    v+k+ Gg + d+ +++Gv++++ +++ +   +riek +i l+   l   k + +++v ++  ++ d++l+ e +yi n++ +i +   ++++  k      ++dla h+l+k +i   + + + + + +++++ ++ v+  d++++  +G+     ev+  + +           k+ ++l+rG+ k v++e er lhda+ vir +v + +l++GGGa e+ i + l++ a +l+ v+++ + a   alevip tl+en G n i+++t+lr +h++ e ++ G++   g+itd+    +  p++v++ + + a e+ ++il+iddiv 
  MMETSP1174-20130828|28815_1  14 RETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDIHDNKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQDrgAGQKEVDVKRYCKVEKIpGGELTDCRVLKGVMFNKDVTH-SKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKG-----ISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTGCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLEnSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  5566677899**************************************************************************************************************************************************************9851256899**9987656665499****************998.56789***********************************************************99986.....69************************************************998888988555555555555567899**************************************************************************************************98651678********************************************96 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.4   1.2  1.4e-109  5.9e-107       4     529 ..      11     524 ..       8     529 .] 0.95

  Alignments for each domain:
  == domain 1    score: 356.4 bits;  conditional E-value: 1.4e-109
    TIGR02340   4 sGerksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPika.vnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGe.aeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlikl 529
                  + +r++G++++  n++a+ ava+i++t+lGP  + kml+d +G +++tndG  il++++v hPaak ++el+  qd+evGdGttsv+il+ e l  +++ ++r++hPt+++sGy  al + +  + +++a+ v+   ++++ ++++ ++ +k  s  + ++ +++++avl+v +   +g+++  +k   ++ k +G+  ++  ++kG  +n  v+  +m++r++k++i+lld  l+ +k +   ++ ++  e+ +++ ++e + + + + +i++   ++v+t kGi dla+ yl  a++ a rr++k+d +r+a+a  at+vs   +++       s +G+ +  ++  +i+d+   +++     k+++i+lrGa + +l+e+er lhda+ v++ ++    +++GgGa e+a+   l + a tl+  +q   a+  +al +iP++l+ n++ +    +++lra h++         ++++G+d ++gki+d   +G+ eP v kv+++k+a+e+a  ilridd++  
  MMETSP1174-20130828|28815_1  11 NTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILD-VCKQIAKPVDIHDNKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQDRGAGQKEVDVKRyCKVEKIPGGELTDCRVLKGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQE------SDVGTgCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLE-------NSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVSG 524
                  56899****************************************************************************************************************999887.56789999*****************************************************9747999**********************************************************************************************************************************97554443......34444277788899******************************************************************************************************************998643.......4579*******************************************9974 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.0   1.0   1.7e-96   6.8e-94      19     518 ..      20     523 ..       7     529 .] 0.92

  Alignments for each domain:
  == domain 1    score: 313.0 bits;  conditional E-value: 1.7e-96
    TIGR02346  19 avlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPkn...sekfnvd.nirvvkllGgslsdsevlkGlvlkreae.gsvk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGl.vdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkk.gnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  a + ni a k +++i+rt+lGP++m k++++ +  +++tnD   ilre++v hPaak ++++s+aq+ee+GDgt  v++l+ge L  +++ i+  ++p+ i++Gy +al ++l+v +++   +  d+++++++++++++++ +k  ++    l+++  +a++ v+ +    +++ +v    +v k+ Gg+l+d  vlkG++++++   ++++ r ++ ++  + cpl+ ++ e +  v + + e+  +  + ee+ ie++  +i   + ++++++  +sdla+hy+ k +i   +   k +  r++++v+at + r +  +  ++G+ +   +v+ ig++  t +++  +  k  ti+LrG+ k++l++ier ++D ++v++++v +  llpG+gate+ + + l++ a +l++++q+     ++a e+iPrtl+en+G n+   l++L a+h++ +n + g+d    + +++d++   i++ +  k    k a e+a  +L++D i+ 
  MMETSP1174-20130828|28815_1  20 AQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIA--KPVDIHDNKQMTELVESAIGTKFSSRwGGHLIQIALEAVLRVIQDRgagQKEVDVKrYCKVEKIPGGELTDCRVLKGVMFNKDVThSKMRrRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTgCGLFEVRKIGDEYFTFLEECAD-PKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSlENSNWGVD--GTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  5578*****************************************************************************************************************986..5678888889999999999999888767899**********998752224445554235677899*****************9651555557899*************************************************************************************************************76999***********98877655.99****************************************************************************************************65245556665..5556679**********************************95 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.5   1.6   5.5e-93   2.3e-90       2     524 ..       5     523 ..       4     528 .. 0.94

  Alignments for each domain:
  == domain 1    score: 301.5 bits;  conditional E-value: 5.5e-93
    TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkd....eeeidlfm.veilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvye.tvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear.evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlr 524
                  v +ln +++     +a + n++aak+++d+++t lGP+  lkml++  G i +t dGn +l+e+ + hP+a+ +   + aqd+ +GdGtts++il ge l++++++ie ++hP +++ G+  a  + l+  +++  k  +  d++ ++e + +++ tk + +   +l +i  +avl + +d    ++e+d+     + ++     +d ++++G++++  + h +m+r++++  il l+  ley k e ++++   + e+ ++l++ e +++++  ++i+ +       ++d   +vi +kGi  l+   l+k++i a+rr ++ + +r+  a+  + +   +++++ ++G    ++e   ig+e +tf+ee+ +Pk++til++g+ +  l+ i+  ++d ++ ++n++ +  +++G ga e+a+ ++l +++ +++  ++    a++ al viP++l en+G +v+ +l++l+++++  + +  gvd  tg+ ++ ++ giw+ + vk q+ ++a   a+ +l +d+++ 
  MMETSP1174-20130828|28815_1   5 VMVLNANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQI-AKPVDIHDNKQMTELVESAIGTKFSSRWGGHLIQIALEAVLRVIQDrgagQKEVDVKRyCKVEKIPGGELTDCRVLKGVMFNKDVTHSKMRRRIEKPRILLLDCPLEYKKGESQANVEITKEEDWDQLLRMEEEYIENMCAQIVAV-------SPD---IVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTGCGLFEvRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSLEnSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  56899999999999999*******************************************************999**********************************************************9.778889999*******************************9887763333567888641455667788899******************************************************************999988754.......567...89999***************************************************9766666268*******************************************************************************************************************998664789*******************************************984 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.3   1.2   9.8e-85     4e-82       2     513 ..       7     523 ..       6     528 .. 0.93

  Alignments for each domain:
  == domain 1    score: 274.3 bits;  conditional E-value: 9.8e-85
    TIGR02341   2 ilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa..vdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl...kgstnle.....aiqiikklggklddsyldegfllekkigvnq.pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgs.cdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahae.gnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniik 513
                  +l++++++e + +a++  +  a av d++++tlgp+ m k+ll      +iv+tndg  il+++ +  paak ++++s+ qd+evgdgttsv +l+ e l  +++ ++++ihp +i++gy +a++  l+  k+ a  vd  ++     +++ ++ ++++++k  s+   h+ ++a +avlr+   +g+++ e       ++ k+ gg+l+d  + +g +++k +   +  +rie+ +il+ + +l+  k     ++v +       +l + e e + +  ++i + + ++ i  + i +  +  +++a+++a         +r+a  +   ivs  de +   +g  c l e   ig++ +  +  ++  +acti+lrga++++l+e er lhda+ v+ + v e     ggg++e+ + +++++ a+  +  +     a ++al+ +p  l++n g +    +++lra+h+   ns+ g+d   g+i+d++ lgi e + +k +   +a e+a+++lr+d+i+ 
  MMETSP1174-20130828|28815_1   7 VLNANTKRETGRTAQMGNISAAKAVADIIRTTLGPRSMLKMLLDPMG--GIVMTNDGNCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAkpVDIHDN-----KQMTELVESAIGTKFSSRWGGHLIQIALEAVLRViqdRGAGQKEvdvkrYCKVEKIPGGELTDCRVLKGVMFNKDVTHSKmRRRIEKPRILLLDCPLEYKKGE-SQANVEITKEEDWDQLLRMEEEYIENMCAQIVAVSPDIVITEKGISDLAQHYLTKANITAFRRLRKTDNNRVARAVNATIVSRPDEIQESDVGTgCGLFEVRKIGDEYFTFLEECADPKACTILLRGASKDVLNEIERNLHDAMQVIRNVVFEPMLLPGGGATEMAIGQSLARSASTLEDVQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKHSSlENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVS 523
                  68999*************************************98665..9*******************************************************************************99976522555444.....5667788888999999****************9855556665442122235788999*****************9987651689**************99876.4678999999999****************************************************99*************************9669999999*********************************************************************************************************************98367899********************************************96 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   4.5e-13   1.8e-10      18     146 ..      28     154 ..      16     242 .. 0.82
   2 !   32.0   0.0   2.4e-11     1e-08     387     524 ..     383     526 ..     370     528 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 4.5e-13
    TIGR02348  18 vdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevk..dkeeiaqva 146
                   +++ad +++tlGP++   +l   +G   +t+dG  + +e++++++     ak + e ++  ++  GdGtt  ++l+   +    + +     p  +  G  ka++++++  k+ +k+v+  d+++++++ 
  MMETSP1174-20130828|28815_1  28 AKAVADIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPA----AKSMIELSRAQDEEVGDGTTSVIILSGECLYLSQQYIERNIHPTVIVSGYGKALAHILDVCKQIAKPVDihDNKQMTELV 154
                  5789*************9999999******************99885....66677888889999***************************************************988611445555432 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.4e-11
    TIGR02348 387 lkekkarvedalnatraaveeG.ivaGGGvallraaekleelkeksed.ekvGveivkraleaPlrqiaenaGkdgavvvekvkek....kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkp 524
                  l e    + da++  r  v e  +++GGG++ + + ++l +  ++ ed ++  +  + rale   r+++en+G +    + ++++k    +++++G +++t++ +d+   Gi +p  v  ++++ a+  a ++l  + +v+ ++
  MMETSP1174-20130828|28815_1 383 LNEIERNLHDAMQVIRNVVFEPmLLPGGGATEMAIGQSLARSASTLEDvQQWPYAAIGRALEVIPRTLTENCGANVIRTLTQLRAKhsslENSNWGVDGTTGKITDMSVLGIWEPFVVKVQTFKTAIESANMILRIDDIVSGMK 526
                  677778899*******999776268***************9666666528899**********************9888888876644446789****************************************9999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.63
# Mc/sec: 1108.29
//
Query:       MMETSP1174-20130828|28821_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1251.45
//
Query:       MMETSP1174-20130828|28823_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 241.35
//
Query:       MMETSP1174-20130828|28828_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|28829_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|28826_1  [L=1201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.57
# Mc/sec: 2733.08
//
Query:       MMETSP1174-20130828|28833_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1029.51
//
Query:       MMETSP1174-20130828|28832_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 871.13
//
Query:       MMETSP1174-20130828|28831_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.52
# Mc/sec: 403.58
//
Query:       MMETSP1174-20130828|28835_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 354.12
//
Query:       MMETSP1174-20130828|28836_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 745.35
//
Query:       MMETSP1174-20130828|28840_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.73
# Mc/sec: 204.31
//
Query:       MMETSP1174-20130828|28839_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-17   61.4   0.0    2.2e-17   61.1   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-06   25.5   0.0     0.0022   14.9   0.0    2.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    3.9e-06   24.0   0.1    0.00019   18.4   0.0    2.1  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    4.7e-06   23.6   0.3     0.0048   13.7   0.0    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.4e-05   22.3   0.0     0.0012   15.9   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00012   19.2   0.1     0.0058   13.6   0.0    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00036   17.8   0.1      0.065   10.4   0.0    2.1  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    0.00041   17.0   0.0    0.00052   16.7   0.0    1.1  1  TIGR00487 IF-2: translation initiation factor IF-2
    0.00049   17.4   0.3       0.02   12.1   0.0    2.0  2  TIGR00436 era: GTP-binding protein Era
     0.0011   16.1   0.7     0.0026   14.8   0.2    1.7  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
     0.0018   15.0   0.0       0.41    7.3   0.0    2.0  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
  ------ inclusion threshold ------
       0.02   12.4   0.0       0.21    9.1   0.0    2.0  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.035   11.1   0.1      0.046   10.7   0.0    1.1  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0     7e-20   2.2e-17       2     160 ..      15     170 ..      14     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 7e-20
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfaklnaep..iielsaetgknidklfk 160
                  k+  +v+vG  ++GK+tLl+ l+    +++e+ p+++ ++    ++  G  ++++ +D++Gq++++  +  y+r  ++++ vvd  ++ +++  +  k+   + + ++ + +p+++ +nK+Dl+      +l t+   +    n  p  +i++sa +++nid++++
  MMETSP1174-20130828|28839_1  15 KKLEVVLVGIENSGKTTLLSVLANG--APVETCPTIGLNVKL--VRKGG--VQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDAHAF-DTIPLAR-KELHRLLEDRELATTPLLVLANKVDLEPhisepELITELNLDYIVDN--PwiVIPISALKVTNIDQVIQ 170
                  6789****************99865..5*********99877..8****..88***********************************.7777777.7777777777789**************98554434444443333344..4459************9987 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0005      0.16     159     182 ..      18      41 ..      15      49 .. 0.91
   2 !   14.9   0.0   6.9e-06    0.0022     233     326 ..      81     174 ..      69     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0005
    TIGR02729 159 dvglvGlpnaGkStllsavsaakp 182
                  +v lvG+ n+Gk tlls++++  p
  MMETSP1174-20130828|28839_1  18 EVVLVGIENSGKTTLLSVLANGAP 41 
                  689***************998765 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6.9e-06
    TIGR02729 233 iertrvllhlidlseedekdpvedleviekeLkky..seeLaekpelvvlnkidlleeeeleellkelkeel....ekkvlaisaltkegleellkklle 326
                     + v+++++d+++    d++    + +keL++   ++eLa+ p lv++nk+dl  + +  el++el+ ++       v+ isal+ ++++++++ l++
  MMETSP1174-20130828|28839_1  81 TRGCDVIIYVVDAHAF---DTI---PLARKELHRLleDRELATTPLLVLANKVDLEPHISEPELITELNLDYivdnPWIVIPISALKVTNIDQVIQWLIK 174
                  56799********999...333...344444444311578***************999777777777777666654667899***********9988766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.1e-07   0.00019       3     159 ..      19     175 ..      17     178 .] 0.70

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.1e-07
    TIGR03594   3 vaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare..glteeDeeiaklLrksk...kpvilvvNKvdnkkeeaeaaefyslGlge.......vlaiSaehgrgikdLldeilee 159
                  v++vG +N GK tL+  l++   A ve  p +    + + ++  g +++  D gG         ++ r++     + +dvi++vvda++   +  + +e+ +lL+ ++   +p+++++NKvd + + +e + + +l+l+        v++iSa + ++i+++++ ++++
  MMETSP1174-20130828|28839_1  19 VVLVGIENSGKTTLLSVLAN--GAPVETCPTIG--LNVKLVRKGGVQMKCWDIGGQ--------AQYRSEWGRYTRGCDVIIYVVDAHAfdTIPLARKELHRLLEDRElatTPLLVLANKVDLEPHISEPELITELNLDYivdnpwiVIPISALKVTNIDQVIQWLIKQ 175
                  67777777777777777764..45566655443..445555566666666666665........55566666778899********9974466678999999998776667999999*****99888887777778776522223335789999999999999988875 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00076      0.24     190     211 ..      17      38 ..      11      45 .. 0.86
   2 !   13.7   0.0   1.5e-05    0.0048     268     347 ..      83     172 ..      79     175 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00076
    TIGR03156 190 ptvalvGYTNaGKstllnaltk 211
                   +v lvG  N+GK+tll  l++
  MMETSP1174-20130828|28839_1  17 LEVVLVGIENSGKTTLLSVLAN 38 
                  6899*************99986 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.5e-05
    TIGR03156 268 eadlllhvvDasd.eeaeeqieaveevLeelgaeeipvllvlNkidkle...eeeleeleekk......eeavlvsAkkgegleeLleai 347
                    d+++ vvDa   +++    ++ +++Le+ +++++p l++ Nk+d+ +   e+el ++ + +         + +sA k ++++++ + +
  MMETSP1174-20130828|28839_1  83 GCDVIIYVVDAHAfDTIPLARKELHRLLEDRELATTPLLVLANKVDLEPhisEPELITELNLDyivdnpWIVIPISALKVTNIDQVIQWL 172
                  679*******9761555667889***********************98866633333322222233222448999999999999998876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.01       3.2     151     175 ..      11      36 ..       2      47 .. 0.77
   2 !   15.9   0.0   3.9e-06    0.0012      57     151 ..      76     174 ..      68     178 .] 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.01
    TIGR03597 151 kare.kkdvyvvGvtNVGKSsliNkl 175
                   +++ k +v++vG  N GK +l+  l
  MMETSP1174-20130828|28839_1  11 AFYTkKLEVVLVGIENSGKTTLLSVL 36 
                  444437899*************9766 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.9e-06
    TIGR03597  57 llnslsekkalvvavvD..ifdlegslikelkrfvken.....kvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikk 151
                  +  ++++   ++++vvD   fd      kel+r++++      ++l+++NK+dl p+ ++ e i+e   +++ ++ +    ++ +sa k ++++++++++ k
  MMETSP1174-20130828|28839_1  76 EWGRYTRGCDVIIYVVDahAFDTIPLARKELHRLLEDRelattPLLVLANKVDLEPHISEPELITELNLDYIVDNPWI---VIPISALKVTNIDQVIQWLIK 174
                  55566667789******777888888999**999886512221678999*****************999999999998...999**************9655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018       5.6     208     230 ..      15      37 ..       3      40 .. 0.84
   2 !   13.6   0.0   1.8e-05    0.0058     287     336 ..      82     137 ..      78     176 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.018
    TIGR00450 208 dglklaivGktNvGKSSLlNall 230
                  + l +++vG  N GK  Ll +l 
  MMETSP1174-20130828|28839_1  15 KKLEVVLVGIENSGKTTLLSVLA 37 
                  66899**************9876 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 1.8e-05
    TIGR00450 287 keadlvlyvlDask....plt.kdd.eliitlkkkkkdlllvlNKiDLaeleilks 336
                  + +d+++yv+Da+     pl  k+  +l+++ + +  +ll++ NK DL  + ++++
  MMETSP1174-20130828|28839_1  82 RGCDVIIYVVDAHAfdtiPLArKELhRLLEDRELATTPLLVLANKVDLEPHISEPE 137
                  569*********973333433245468999******************94443333 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00021     0.065     116     146 ..      14      44 ..       4      56 .. 0.86
   2 !    5.8   0.0    0.0052       1.6      21      97 ..      83     171 ..      65     178 .] 0.60

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00021
    TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakv 146
                  +k+++++ vGi N GK tl+  la+   +++
  MMETSP1174-20130828|28839_1  14 TKKLEVVLVGIENSGKTTLLSVLANGAPVET 44 
                  68899******************99877666 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0052
    TIGR03596  21 lvDvvievlDAR....iplssknpeleelvk.....nkprlivlnkaDladpektkkwlkyfe.....ekgkkalavnakkkkkvkkilka 97 
                    Dv+i v+DA     ipl+   +el++l++       p l++ nk Dl  +    ++++ ++     ++   ++ ++a k +++ ++++ 
  MMETSP1174-20130828|28839_1  83 GCDVIIYVVDAHafdtIPLA--RKELHRLLEdrelaTTPLLVLANKVDLEPHISEPELITELNldyivDNPWIVIPISALKVTNIDQVIQW 171
                  679********833334555..555666665222236689999*****9765554444444332100244445555666666666665554 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06   0.00052      93     246 ..      22     173 ..      10     177 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-06
    TIGR00487  93 mGhvDhGktsLLdsirktkvaeg.eaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaad..DGv...kpqtieaiehakaanvPiivainkiDk.peanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiL 246
                  +G  + Gkt+LL+++ +   +e+  + G+       ++  + + ++   D  G + + s   r  +  D+++ vv a   D +   ++     +e    a +P++v  nk+D  p+     ++ el+   +v + w    i++p+salk ++id++++ ++
  MMETSP1174-20130828|28839_1  22 VGIENSGKTTLLSVLANGAPVETcPTIGLNV-----KLVRKGGVQMKCWDIGGQAQYRSEWGRYTRGCDVIIYVVDAHafDTIplaRKELHRLLEDRELATTPLLVLANKVDLePHISEPELITELNLDYIVDNPW----IVIPISALKVTNIDQVIQWLI 173
                  5666677777777776654333203333322.....23334444677889999999999999999999****999764338883323444557899999*************735666666778888766788888....9**************998765 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.028         9       3      22 ..      19      38 ..      17      43 .. 0.86
   2 !   12.1   0.0   6.3e-05      0.02      79     156 ..      83     169 ..      79     176 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.028
    TIGR00436  3 vailGrpnvGKSTLlNkllg 22
                 v ++G  n GK TLl  l +
  MMETSP1174-20130828|28839_1 19 VVLVGIENSGKTTLLSVLAN 38
                 7789***********88765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.3e-05
    TIGR00436  79 evdlilfvvdsdeknke...delllekl...qklkapvvlalnkldnkekdkllelidkea..sllefk.eiveisalkgenveelk 156
                  + d+i++vvd+++        + l   l     + +p ++  nk+d + + ++ eli++++   ++++   +++isalk +n++++ 
  MMETSP1174-20130828|28839_1  83 GCDVIIYVVDAHAFDTIplaRKELHRLLedrELATTPLLVLANKVDLEPHISEPELITELNldYIVDNPwIVIPISALKVTNIDQVI 169
                  689*******99866542222233333311044578899999*****9887776666655411455555699**********98765 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.46   1.5e+02       5      26 ..      16      37 ..      13      73 .. 0.85
   2 !   14.8   0.2   8.4e-06    0.0026     110     194 ..      89     174 ..      83     177 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.46
    TIGR03680  5 evniglvGhvDhGkttlvkalt 26
                 ++++ lvG  + Gkttl + l+
  MMETSP1174-20130828|28839_1 16 KLEVVLVGIENSGKTTLLSVLA 37
                 5678899999999999988775 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 8.4e-06
    TIGR03680 110 Lviaan..eevPqpqtkeh.lvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaena.piiPvsalkkvnidvllealek 194
                   v++a   +++P ++ + h l     +++  +++  nk+dl   e  + + e i e+  +++ +n   +iP+salk +nid +++ l k
  MMETSP1174-20130828|28839_1  89 YVVDAHafDTIPLARKELHrLLEDRELATTPLLVLANKVDL---EPHISEPELITELNLDYIVDNPwIVIPISALKVTNIDQVIQWLIK 174
                  556544225666666555523333457788899999**999...66788889999998888888762579*************998765 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0031      0.98       6      29 ..      15      38 ..      11      47 .. 0.90
   2 !    7.3   0.0    0.0013      0.41      85     165 ..      82     174 ..      66     178 .] 0.61

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0031
    TIGR03918  6 erlhialfGrrNaGKSsliNaltg 29
                 ++l+++l+G  N+GK +l+  l++
  MMETSP1174-20130828|28839_1 15 KKLEVVLVGIENSGKTTLLSVLAN 38
                 6899***************99876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0013
    TIGR03918  85 ektdlallvvdaeaele..eleee...lleelkekkipvivvlnkidlkeeeke.......keklekkkeeevvlvsakekegieelkealie 165
                  + +d++++vvda+a  +   + +e   lle+ +  ++p++v++nk+dl+ + +e       + ++   +   v+ +sa + ++i+++ + li+
  MMETSP1174-20130828|28839_1  82 RGCDVIIYVVDAHAFDTipLARKElhrLLEDRELATTPLLVLANKVDLEPHISEpelitelNLDYIVDNPWIVIPISALKVTNIDQVIQWLIK 174
                  5689******9985332112344400144555555689**********999877433311111111222233556777777777777777766 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00066      0.21      15      40 ..      13      38 ..       5      47 .. 0.86
   2 ?    1.4   0.0      0.15        48     128     184 ..     116     171 ..      81     173 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00066
    TIGR03598 15 edklpeiafaGrSNvGKSsliNaLtn 40
                  +k+ e++++G  N+GK +l+ +L+n
  MMETSP1174-20130828|28839_1 13 YTKKLEVVLVGIENSGKTTLLSVLAN 38
                 57899*****************9998 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.15
    TIGR03598 128 akipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                  a++p+lv+++K+D   + +  + +++++ +   + +   v+ +S+lk ++i+++ ++
  MMETSP1174-20130828|28839_1 116 ATTPLLVLANKVDLEPHISEPELITELNLDYIVD-NPWIVIPISALKVTNIDQVIQW 171
                  3455666666666555555555555544444444.4457888999999999998876 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014     0.046     167     199 ..       5      37 ..       1      44 [. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00014
    TIGR03819 167 vaelleaivaarlallvsGgtGsGkttLLsalL 199
                  ++++++a  +++l ++++G   sGkttLLs l 
  MMETSP1174-20130828|28839_1   5 LQRMFDAFYTKKLEVVLVGIENSGKTTLLSVLA 37 
                  56788889999******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 489.46
//
Query:       MMETSP1174-20130828|28838_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-90  300.7   0.0    3.9e-90  300.3   0.0    1.1  1  TIGR00260 thrC: threonine synthase


Domain annotation for each model (and alignments):
>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.3   0.0   9.5e-94   3.9e-90       9     331 ..      72     447 ..      64     455 .. 0.92

  Alignments for each domain:
  == domain 1    score: 300.3 bits;  conditional E-value: 9.5e-94
    TIGR00260   9 evtekdlvdlaegstelfrspkla..eevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.....tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeifedke...klklnsvNsinparieaqktyafeiveqlgkespdkvvvpvpsgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnverale.larrslgnledlke........................................svsdeeileaikklaeeegyllephtavavaalkklvekg..vs...atadpaKFeevveal 331
                  e++++dl++l+ +st++fr++ ++  ++vg   ++++elfhgPt+aFKD++lq +++l++++  ++       t+++AtsGdtg+aa+++l+gkanv++++LyP+g++s++ +++++t+++ n++ l+i+G+FDdaqd+vk +f d +    +kl++vNsin+ar++aq+ty+f++  q+ ++++  v ++vp gnfg+il+G+++k ++ lp+ kl ia++ + di++rf+ +gd ++ +  + +s++mdi  +sn+er l+ ++  +   l+ l e                                        ++ ++e+ + i+  +ee gyll ph+a +v a+++l  +   +    ata+p+KF ++v   
  MMETSP1174-20130828|28838_1  72 EIPHADLKELIGRSTSNFRVKSVTpcKKVGD--MWMLELFHGPTFAFKDVALQELGNLFEYFIAKKTGadkrlTIMGATSGDTGSAAIYGLRGKANVDCFILYPEGRVSLIqEQQMATVPDANIHCLKIDGTFDDAQDIVKGAFMDTKfrnRVKLGAVNSINWARVLAQITYYFSAYYQVTEDDSAPVNFSVPTGNFGDILAGYYAKMMG-LPVGKLVIATNTN-DILHRFMTTGDYVKESIAKSMSPSMDICVSSNFERFLFhMMDDNSSVLKTLMEsfegkatttanlpgvgsavkgalhvegkplamarehmqsaRAGNAECQKVIRDYLEEFGYLLCPHSACGVYASIELGYQKdsTMvnlATAHPGKFYDSVSEA 447
                  45589******************96666665..****************************987776667999**************************************999******************************96656889***************************************************9988777.************9.**********88888888*******************97777888888888779************************************************************************99865554522568***********9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1637.86
//
Query:       MMETSP1174-20130828|28841_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|28844_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   28.9   0.0    2.2e-07   28.2   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.4e-11   2.2e-07      87     176 ..      65     153 ..      49     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 5.4e-11
    TIGR03516  87 etgDlvsfeyeikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                    +   + +y    +dg++  s  + g+ t     +++i+G  ++++lm eg++  +++Ps +ayG  G   ki  + ++  t+ +l+ik
  MMETSP1174-20130828|28844_1  65 TSDSSCECHYAGTLIDGTTFDSSYDRGSPTS-FAPNQVIKGWTEAMQLMVEGDKWELYIPSEMAYGARGSPPKIPGDSTLVFTIEILKIK 153
                  5555566667777777888888888877764.456789***********************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1028.60
//
Query:       MMETSP1174-20130828|28846_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|28845_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 195.11
//
Query:       MMETSP1174-20130828|28842_1  [L=1014]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.75u 0.15s 00:00:00.90 Elapsed: 00:00:00.79
# Mc/sec: 1694.14
//
Query:       MMETSP1174-20130828|28849_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 708.57
//
Query:       MMETSP1174-20130828|28854_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1004.06
//
Query:       MMETSP1174-20130828|28857_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 624.75
//
Query:       MMETSP1174-20130828|28861_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.77    5.8   5.3       0.85    5.6   3.7    1.1  1  TIGR02784 addA_alphas: double-strand break repair helicase AddA


Domain annotation for each model (and alignments):
>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.7   0.00021      0.85     909     973 ..      51     114 ..      19     132 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00021
    TIGR02784 909 rlaltaedlkevkeeeeaaaeeaaealPawlsepvpaepklakplapSdlskaiekaeeeeaars 973
                  + ++tae+ + ++e++e a+ ++a a P+ l +p++++ + a++  pS++ ++ ++a  +e+a +
  MMETSP1174-20130828|28861_1  51 KEQETAESAP-STETSEPAQPKEAVATPESLETPAAEVVAPAEAATPSEAATTPSEAVSSESAPT 114
                  3444444444.445556667788888***********************9887665555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1174-20130828|28860_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-25   88.1   1.7    1.6e-25   87.7   1.2    1.1  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    2.1e-12   44.9  14.8    2.6e-09   34.8   7.6    2.2  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    3.5e-09   34.4  14.5    1.5e-07   29.1   9.1    2.8  2  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    8.3e-07   26.9   1.1    8.3e-07   26.9   0.7    2.3  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
    7.8e-06   23.2   6.2    2.3e-05   21.6   4.3    1.6  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    8.8e-06   22.7  10.8     0.0036   14.1   3.3    2.2  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    1.6e-05   21.2   6.2    2.9e-05   20.5   2.3    2.2  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    6.8e-05   20.8  15.4      0.013   13.4   3.1    3.1  3  TIGR01172 cysE: serine O-acetyltransferase
    0.00031   18.2   9.0    0.00055   17.4   4.9    2.0  2  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
    0.00042   17.1   8.9     0.0064   13.2   2.1    2.1  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0038   14.0   8.2      0.044   10.5   0.7    2.1  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0044   14.2   8.3      0.049   10.7   1.8    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
  ------ inclusion threshold ------
      0.011   12.7   0.3      0.016   12.1   0.2    1.2  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   1.2   5.2e-28   1.6e-25      13     183 ..      58     229 ..      45     238 .. 0.83

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 5.2e-28
    TIGR02287  13 eeayvhpsavligdvivgkrvyvgplaslrgdfgrivlkeganvqdtcvmhgfp...gqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrelseqelawkkegtreyqdlaarslqtlkeveplaeaeagrkr 183
                   +a+v p+a +igdv +g++  v   as+rgd   i +   + + ++  +h      +  t v+++  vg +ailh+c+v ++ ++g  avv+dga +  +++va  a v  g  + +  l  g+pak  r+l+ +e++     ++e +++a+  l++l+  +  +++ a+ + 
  MMETSP1174-20130828|28860_1  58 VKAFVAPNATVIGDVEIGPGSSVWYGASVRGDVHSIKVGRSSSIGENVTVHVAKiagDFPTCVGDQVTVGANAILHACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSPGKVVGSGELWSGTPAKFLRNLTPEEIDGIAASAAETEEMAK--LHALECDKSYQQIAADLDD 229
                  479********************************************99997532115569*****************************************************************************998888888777765..3334333444445555555 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00011     0.036     142     172 ..      60      90 ..      53      93 .. 0.69
   2 !   34.8   7.6   8.4e-12   2.6e-09     114     202 .]      95     185 ..      90     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
    TIGR03570 142 vhiapgatlsGgvkigegvfiGagAtviqgv 172
                  + +ap+at+ G+v+ig g+ +  gA+v+ +v
  MMETSP1174-20130828|28860_1  60 AFVAPNATVIGDVEIGPGSSVWYGASVRGDV 90 
                  4567777777777777777777777777665 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 8.4e-12
    TIGR03570 114 inadvrigdnviintgavv.eHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVv..kdipenavvvGvPak 202
                  +  +++ig+nv+++   +  +  + +gd v++ ++a+l   ++++++v+iGagA+v++g t++++avv  GavV   k + +++++ G+Pak
  MMETSP1174-20130828|28860_1  95 VGRSSSIGENVTVHVAKIAgDFPTCVGDQVTVGANAILH-ACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSpgKVVGSGELWSGTPAK 185
                  667899*******9988874689*************998.69********************************855889**********98 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.3    0.0022       0.7     167     200 ..      60      93 ..      24      99 .. 0.85
   2 !   29.1   9.1   4.9e-10   1.5e-07      86     214 ..      59     190 ..      58     200 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0022
    TIGR03532 167 vliGanavileGvkvGkGavvaaGaiviedvpen 200
                   ++  na ++  v++G G+ v  Ga v  dv + 
  MMETSP1174-20130828|28860_1  60 AFVAPNATVIGDVEIGPGSSVWYGASVRGDVHSI 93 
                  47889*************************9865 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 4.9e-10
    TIGR03532  86 nariepGaiirdkvaigdnavimmGav.......iniG..aeiGegtmidmnavlGgr.aivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaivi..edvpentvvaGvpakvikev 214
                  +a + p a++   v+ig ++ +  Ga        i +G  + iGe+  + +  + G   + vG +v +Ga a+l           +++e++v+iGa av+l+G +v + avva Ga+v   + v +  + +G+pak ++++
  MMETSP1174-20130828|28860_1  59 KAFVAPNATVIGDVEIGPGSSVWYGASvrgdvhsIKVGrsSSIGENVTVHVAKIAGDFpTCVGDQVTVGANAILH---------ACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSpgKVVGSGELWSGTPAKFLRNL 190
                  677889999999999999999999986222222245663357999999999999998625699999999999984.........689*******************************7446799999********99876 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.044        14     112     149 ..      57      94 ..      50     101 .. 0.85
   2 !   26.9   0.7   2.6e-09   8.3e-07      94     168 ..     120     196 ..     100     233 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.044
    TIGR03308 112 GhdvWiGhGavilPgvtiGnGavvaagavvtkdvasyt 149
                  G   ++   a+++ +v+iG G+ v  ga v  dv s  
  MMETSP1174-20130828|28860_1  57 GVKAFVAPNATVIGDVEIGPGSSVWYGASVRGDVHSIK 94 
                  5566777789***********************98865 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 2.6e-09
    TIGR03308  94 aeddadffaarkakrvtiGhdvWiGhGavilPgvtiGnGavvaagavvt..kdvasytivaGvpaklirrrfaeeia 168
                    d+ ++ a    ++ t+   v iG Gav+l g t+   avva gavv+  k v s  + +G+pak +r+  +eei 
  MMETSP1174-20130828|28860_1 120 VGDQVTVGANAILHACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSpgKVVGSGELWSGTPAKFLRNLTPEEID 196
                  55666677777788999999****************************8557899***************9999984 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   4.3   7.3e-08   2.3e-05      35     147 ..      60     162 ..      45     176 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.3e-08
    TIGR01852  35 velkshvviegattiGentkvfpgAviGeepQdlkykgekteleiGdnntirEfvtinrgtkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiig 147
                  + +++++++ g+++iG ++ v+ gA++         +g+  ++++G +  i E vt++ +   g+  t +Gd++ + a++ + H c+v+n+vv++  a +    +v + a+++
  MMETSP1174-20130828|28860_1  60 AFVAPNATVIGDVEIGPGSSVWYGASV---------RGDVHSIKVGRSSSIGENVTVHVAKIAGDFPTCVGDQVTVGANA-ILHACTVENQVVIGAGAVVLDGATVKSNAVVA 162
                  457889999999999999999999987.........45667899****************************99988776.99***********8877665556666666665 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4   4.7e-05     0.015      82     156 ..      31     108 ..      21     116 .. 0.78
   2 !   14.1   3.3   1.1e-05    0.0036     117     175 ..     118     175 ..     108     177 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.7e-05
    TIGR01853  82 aelfkpkakreagilptavveesakleeeveigpnvviganveiGenvkIgpgvvigddv...kigdesviyanvviy 156
                  a++ ++++ ++ ++  + v+ ++++ + ++ ++pn+++  +veiG ++ +  g+ +  dv   k+g+ s i  nv++ 
  MMETSP1174-20130828|28860_1  31 ARIVETPVVSTVKMPFKGVTPSTTNAGVKAFVAPNATVIGDVEIGPGSSVWYGASVRGDVhsiKVGRSSSIGENVTVH 108
                  555555555555555566666777888999***********************999876533379**********997 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.1e-05
    TIGR01853 117 vviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagaviGs 175
                  + +g++v++G+n  I   ++++++v+ig+++v+  ++++ +++ +    ++++g v+Gs
  MMETSP1174-20130828|28860_1 118 TCVGDQVTVGANA-ILHACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSPGKVVGS 175
                  57999*****997.5667999**************************9********997 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.067        21     369     678 ..      50      80 ..      29     115 .. 0.62
   2 !   20.5   2.3     9e-08   2.9e-05     161     212 ..     135     186 ..      92     192 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.067
    TIGR02353 369 vPkLvdigeetfia.DavllgnaelsggwlrlertrigkrsFlGNsgvlppgakladnvLvgvksatPkdgkvregvtllGsPpielprsterddelealtfepslrrrlarkavenlrivllfllvllvvllvlvvldlqalddeeelaavlllaalillavavlaflilvelkwlvvgrykpqekplyspfvWlnElltklvesvavpellrllrGTpflnlvlrlLGvkiGrgvyidstdltErdlvtigddstlnegsvlQtHlfedrvlkvdtvtigdgatlgpsaivlygavvgedavlgpdslv 678
                  +P+ ++ g  +f+a  a+++g+ e+++g+                                                                                                                                                                                                                                                                                         v
  MMETSP1174-20130828|28860_1  50 TPSTTNAGVKAFVApNATVIGDVEIGPGSS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V 80 
                  555555555555553345555555555432........................................................................................................................................................................................................................................................................................2 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 9e-08
    TIGR02353 161 vrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqk 212
                   +v++++++G+ +v+  ++++   a ++++  +  g+++ +ge W+G PA+ 
  MMETSP1174-20130828|28860_1 135 CTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSPGKVVGSGELWSGTPAKF 186
                  5788999999999999999999999999999999999999999999999975 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0047       1.5     119     151 ..      59      91 ..      50      96 .. 0.85
   2 !   10.3   1.7   0.00037      0.12      83     146 ..      68     132 ..      65     134 .. 0.81
   3 !   13.4   3.1   4.1e-05     0.013     115     160 ..     136     183 ..     132     185 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0047
    TIGR01172 119 gvvigagakvLGnievgenakiGansvvlkdvp 151
                  ++ ++ +a+v+G++e+g ++++  ++ v  dv 
  MMETSP1174-20130828|28860_1  59 KAFVAPNATVIGDVEIGPGSSVWYGASVRGDVH 91 
                  467999****************99999988885 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00037
    TIGR01172  83 viGetavigddvsiyqgvtLGgtgk.ekgkRhPtvkegvvigagakvLGni..evgenakiGansvv 146
                  viG+ ++ig   s++ g  + g  +  k  R   ++e+v++   ak+ G++  +vg+++ +Gan++ 
  MMETSP1174-20130828|28860_1  68 VIGD-VEIGPGSSVWYGASVRGDVHsIKVGRSSSIGENVTVH-VAKIAGDFptCVGDQVTVGANAIL 132
                  7776.6899999999998886665505669**********97.69****86448**********985 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 4.1e-05
    TIGR01172 115 tvkegvvigagakvLGnievgenakiGansvvl..kdvpaeatvvGvp 160
                  tv+++vvigaga vL   +v +na +  ++vv   k v+++    G p
  MMETSP1174-20130828|28860_1 136 TVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSpgKVVGSGELWSGTP 183
                  899****************************96334455555555555 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.18        56     101     128 ..      62      89 ..      49     111 .. 0.59
   2 !   17.4   4.9   1.7e-06   0.00055      91     135 ..     116     161 ..      72     169 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.18
    TIGR04016 101 lganvillgditignnvtigagsvvlds 128
                  +  n  ++gd+ ig   ++  g+ v   
  MMETSP1174-20130828|28860_1  62 VAPNATVIGDVEIGPGSSVWYGASVRGD 89 
                  4557777888888777776666555433 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.7e-06
    TIGR04016  91 acpvigngvelganvillgditignnvtigagsvvld..sipdnalv 135
                      +g++v +gan il    t+ n+v igag+vvld  ++  na+v
  MMETSP1174-20130828|28860_1 116 FPTCVGDQVTVGANAIL-HACTVENQVVIGAGAVVLDgaTVKSNAVV 161
                  23469*********975.679***************94446677766 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.7    0.0016      0.52     378     433 ..      40      95 ..      38     111 .. 0.88
   2 !   13.2   2.1     2e-05    0.0064     389     427 ..     115     152 ..      93     168 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0016
    TIGR01173 378 gtitcNYDGvnKhktvigddvfiGsdsqlvaPvkvgdgatiaaGstvtkdvpegaL 433
                  +t+   + Gv  ++t  g ++f+  +++++  v++g g  +  G+ v+ dv + ++
  MMETSP1174-20130828|28860_1  40 STVKMPFKGVTPSTTNAGVKAFVAPNATVIGDVEIGPGSSVWYGASVRGDVHSIKV 95 
                  57888899*******************************************87654 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2e-05
    TIGR01173 389 KhktvigddvfiGsdsqlvaPvkvgdgatiaaGstvtkd 427
                   + t++gd+v +G+++ l a  +v+++++i+aG++v + 
  MMETSP1174-20130828|28860_1 115 DFPTCVGDQVTVGANAILHA-CTVENQVVIGAGAVVLDG 152
                  468999********999987.689999999999999764 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.7   0.00014     0.044     233     299 ..      56     126 ..      46     134 .. 0.75
   2 !    7.6   1.1     0.001      0.32     240     278 ..     132     170 ..     125     177 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
    TIGR03992 233 eevegeveenvklkgevvveegavvrsgayieGpvl...igknaeiGPnayiRpatvige.dvkvgnavei 299
                    v+  v +n+++ g+v ++ g+ v  ga + G v    +g+ ++iG n  +  a + g+  + vg +v +
  MMETSP1174-20130828|28860_1  56 AGVKAFVAPNATVIGDVEIGPGSSVWYGASVRGDVHsikVGRSSSIGENVTVHVAKIAGDfPTCVGDQVTV 126
                  56778899*************************874333899999**999887765544422334444444 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.001
    TIGR03992 240 eenvklkgevvveegavvrsgayieGpvligknaeiGPn 278
                   + ++++ +vv++ gavv +ga ++  +++  +a++ P 
  MMETSP1174-20130828|28860_1 132 LHACTVENQVVIGAGAVVLDGATVKSNAVVAPGAVVSPG 170
                  566789999999999999999999999888888888874 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.3    0.0026      0.82     208     251 ..      60     106 ..      55     112 .. 0.84
   2 !   10.7   1.8   0.00015     0.049     182     232 ..     119     170 ..     108     182 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0026
    TIGR03991 208 akveefsflegpvyigegarvkagarikggt...siGttckiGGEve 251
                  a v + + + g v ig+g+ v  ga ++g++    +G  + iG  v+
  MMETSP1174-20130828|28860_1  60 AFVAPNATVIGDVEIGPGSSVWYGASVRGDVhsiKVGRSSSIGENVT 106
                  7799*************************983335899999997775 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
    TIGR03991 182 fieegakvkegavlda..sdGpivigkdakveefsflegpvyigegarvkaga 232
                   ++  ++v ++a+l+a   + ++vig++a v +++ ++ ++++++ga v    
  MMETSP1174-20130828|28860_1 119 CVGDQVTVGANAILHActVENQVVIGAGAVVLDGATVKSNAVVAPGAVVS-PG 170
                  6889999999****97335789*************************994.44 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     5e-05     0.016     298     362 ..      78     149 ..      45     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5e-05
    TIGR02091 298 slvaegcvisgatvenSvlgervriesesevedsvvlge........vkigenakikkaiidknvrigegvki 362
                  s v  g+ ++g  v++  +g+++ i+++++v+ + + g+        v++g+na ++ + ++++v+ig g+++
  MMETSP1174-20130828|28860_1  78 SSVWYGASVRG-DVHSIKVGRSSSIGENVTVHVAKIAGDfptcvgdqVTVGANAILHACTVENQVVIGAGAVV 149
                  55667888887.777777999999*****999999999999999999*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.54
# Mc/sec: 662.39
//
Query:       MMETSP1174-20130828|28859_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   16.4   0.6      0.035   11.8   0.0    2.6  2  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
     0.0047   14.9   0.2     0.0074   14.2   0.2    1.3  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.7e-05     0.035      99     144 ..     124     170 ..     120     174 .. 0.89
   2 ?    1.7   0.1     0.022        45      30      70 ..     188     227 ..     185     237 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
    TIGR03927  99 LFsseyeqtsssseste.eeetektssilllvliaglillliagiyf 144
                  L+ ++ e+t++s++ +   ++  + ss++++++  +++ l++ag+++
  MMETSP1174-20130828|28859_1 124 LDLEFEEVTTTSDDDDLsSDSPNQASSNVIIIVCLVIVALIVAGMFY 170
                  7888999999998877679999999*******************986 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.022
    TIGR03927  30 ryekkdiEkntellqgeetelekelftpeeqkkikkkkkke 70 
                  ++e++d++  + ++q+eet     + ++e+q ++ ++++++
  MMETSP1174-20130828|28859_1 188 KIEEDDDDGGKYYNQDEETGSS-NIMLQEVQQDVVEERAAD 227
                  799************9999944.599999999887777654 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   3.6e-06    0.0074       6     110 ..     152     252 ..     149     307 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.6e-06
    TIGR02205   6 liivGilaiaallvhglwksrkeksklfdkkklkraklksdddsseelvedde...veevrverveheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqql 110
                  +ii+  l+i+al+v g+   +++k      ++    k+++ddd+  +  ++de   + ++  ++v++++   +e+     +e ++  +k+ +e++ea vp   vqqq+
  MMETSP1174-20130828|28859_1 152 VIIIVCLVIVALIVAGMFYGHHNKYGEHVCRHSPPGKIEEDDDDGGKYYNQDEetgSSNIMLQEVQQDV--VEERAA--DPEPEALRKKPAEEPVEAMVP---VQQQI 252
                  5666688999******98777666555544444445555555555555444442234455554443333..333322..223333345555566666666...33322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.47
# Mc/sec: 1398.52
//
Query:       MMETSP1174-20130828|28865_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.3   3.2       0.62    7.5   0.1    2.0  2  TIGR03084 TIGR03084: TIGR03084 family protein


Domain annotation for each model (and alignments):
>> TIGR03084  TIGR03084: TIGR03084 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2   0.00018      0.74     121     134 ..       2      15 ..       1      21 [. 0.92
   2 ?    7.5   0.1   0.00015      0.62     121     134 ..      37      50 ..      30      52 .] 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00018
    TIGR03084 121 pmsaaslatArlmE 134
                  +msa+s+ +A++mE
  MMETSP1174-20130828|28865_1   2 EMSAVSMGSAGIME 15 
                  8************9 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00015
    TIGR03084 121 pmsaaslatArlmE 134
                  +msa+s+ +A++mE
  MMETSP1174-20130828|28865_1  37 EMSAVSMGSAGIME 50 
                  8************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1174-20130828|28863_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 859.54
//
Query:       MMETSP1174-20130828|28869_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1174-20130828|28870_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1174-20130828|28862_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   52.5  16.1     0.0035   14.9   0.4    5.3  5  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    7.5e-14   48.9  48.4    4.3e-06   23.3   0.7    6.4  7  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    2.1e-11   40.8  22.4      0.001   15.3   0.2    5.4  5  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
     0.0064   14.7  18.1       0.13   10.4   2.6    4.9  4  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
  ------ inclusion threshold ------
      0.041   11.5  10.3          1    6.9   0.1    4.5  5  TIGR01008 rpsC_E_A: ribosomal protein S3
        1.9    6.0  17.3        4.3    4.8  12.0    1.7  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.5e-06    0.0044     100     149 ..     286     337 ..     278     347 .. 0.58
   2 !   13.1   0.1   1.9e-05     0.013       7      60 ..     356     406 ..     348     419 .. 0.87
   3 !   12.1   0.0   3.9e-05     0.027      11      56 ..     431     477 ..     420     486 .. 0.75
   4 !   14.9   0.4   5.2e-06    0.0035     103     150 ..     498     545 ..     493     549 .. 0.95
   5 ?    4.2   1.1      0.01       6.9      99     145 ..     569     616 ..     561     639 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.5e-06
    TIGR03665 100 kgriIGeeGktrkiieeltgvkisvygkt..vsiiGeieqvkiareAiemli 149
                     +IG++G + k iee +g+++ + ++t   s +G+++qv+ a + ++ ++
  MMETSP1174-20130828|28862_1 286 LPAVIGKKGMVIKSIEESSGARLKIGEDTtiCSFLGSPDQVAEAMSQVQAIL 337
                  4455666666666666666666666553311355666666665555555554 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.9e-05
    TIGR03665   7 drigvliGkkgevkkeieektkvkleidseegevkveeeeedplkvlkarevvk 60 
                  d+i +++Gkkg + ++i e+ ++ ++ + e++++ v   + d  +v ka e+++
  MMETSP1174-20130828|28862_1 356 DKIPAVMGKKGANIRKIVEESQAMIKTNRENNSIVV---SGDGAQVQKALELIH 406
                  89**********************************...778888888888776 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 3.9e-05
    TIGR03665  11 vliGkkgevkkeieektkvkleidseegevkve.eeeedplkvlkar 56 
                  v++Gk+g++ + i+e+t+++l+++  +  v ve e+++ +++v +  
  MMETSP1174-20130828|28862_1 431 VVLGKQGSTIRAIQEETGARLTMERGSTFVLVEgETDQVAMAVAQLH 477
                  56799999999999999999999999999999644444455555555 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 5.2e-06
    TIGR03665 103 iIGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareAiemlie 150
                  +IG++G t ++i++ +g+ +   + +v + G+ eqv+ a+  ++++i 
  MMETSP1174-20130828|28862_1 498 VIGKGGATIRNIRDQSGAAVDLLDGNVKLTGTEEQVSKAKVMVDKIIA 545
                  8****************************************9999985 PP

  == domain 5    score: 4.2 bits;  conditional E-value: 0.01
    TIGR03665  99 ikgriIGeeGktrkiieeltgvkisvy.gktvsiiGeieqvkiareAi 145
                    g +IG++G + + i++ +g++i +  g++v   G+  +v   +eA+
  MMETSP1174-20130828|28862_1 569 AVGMVIGRHGIMINKIKDESGANIDIArGQAVKGSGTLCRVYGKKEAV 616
                  558889999999999999999999874245554444333333333333 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.4      0.21   1.4e+02     225     267 ..      72     109 ..      33     124 .. 0.43
   2 ?   -4.1   2.1       1.2   8.1e+02     250     272 ..     193     215 ..     146     270 .. 0.50
   3 !   17.2   0.4   4.3e-07    0.0003     564     629 ..     288     354 ..     281     356 .. 0.86
   4 !   18.4   1.8   1.8e-07   0.00013     559     611 ..     355     407 ..     343     412 .. 0.89
   5 !   10.0   0.1   6.3e-05     0.043     565     613 ..     432     480 ..     425     488 .. 0.87
   6 !   23.3   0.7   6.3e-09   4.3e-06     560     619 ..     493     550 ..     482     570 .. 0.81
   7 !   12.2   2.9   1.4e-05    0.0094     560     620 ..     568     634 ..     559     658 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.21
    TIGR03591 225 eakeedeelkkkveelaeekelkealkieekqereealeevke 267
                  +++++ ++  +k ++ a++++ k+  k ++k + +++     +
  MMETSP1174-20130828|28862_1  72 KPSKS-KSGASKAAKPATQTSSKKSKKKKKKAAATKQ----DS 109
                  22222.1111111222221222222222222222222....22 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 1.2
    TIGR03591 250 lkieekqereealeevkeevlee 272
                   k ++k++ +++ + v+eev+++
  MMETSP1174-20130828|28862_1 193 KKKNKKKKAAKTADVVSEEVKAA 215
                  11111111111111111111111 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 4.3e-07
    TIGR03591 564 eviGkgGkvireiieetgakidieddGtvkiaaadkeaaekakklieeit.aevevgkvyegkvvki 629
                  +viGk+G vi++i e++ga+++i +d t+  +  + +++ +a++++++i  ++ +v++   +kvv++
  MMETSP1174-20130828|28862_1 288 AVIGKKGMVIKSIEESSGARLKIGEDTTICSFLGSPDQVAEAMSQVQAILdHNSDVDANQVTKVVEV 354
                  79****************************9999999**********99834566776666666655 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 1.8e-07
    TIGR03591 559 kdkireviGkgGkvireiieetgakidieddGtvkiaaadkeaaekakkliee 611
                   dki +v+Gk+G++ir+i+ee++a i+ + + +  +++ d ++++ka +li+ 
  MMETSP1174-20130828|28862_1 355 GDKIPAVMGKKGANIRKIVEESQAMIKTNRENNSIVVSGDGAQVQKALELIHL 407
                  59***********************************************9975 PP

  == domain 5    score: 10.0 bits;  conditional E-value: 6.3e-05
    TIGR03591 565 viGkgGkvireiieetgakidieddGtvkiaaadkeaaekakklieeit 613
                  v+Gk G++ir+i+eetga++++e   t  ++  +++++ +a+++++e++
  MMETSP1174-20130828|28862_1 432 VLGKQGSTIRAIQEETGARLTMERGSTFVLVEGETDQVAMAVAQLHELI 480
                  89********************998888888888888999988888776 PP

  == domain 6    score: 23.3 bits;  conditional E-value: 6.3e-09
    TIGR03591 560 dkireviGkgGkvireiieetgakidieddGtvkiaaadkeaaekakklieeitaevevg 619
                   ++ +viGkgG++ir+i +++ga++d+  dG+vk+++++ e+++kak ++++i+ae   g
  MMETSP1174-20130828|28862_1 493 GHVPAVIGKGGATIRNIRDQSGAAVDLL-DGNVKLTGTE-EQVSKAKVMVDKIIAEEVAG 550
                  57899*********************98.5*****9876.67899********9987655 PP

  == domain 7    score: 12.2 bits;  conditional E-value: 1.4e-05
    TIGR03591 560 dkireviGkgGkvireiieetgakidiedd......Gtvkiaaadkeaaekakklieeitaevevgk 620
                  d ++ viG+ G +i++i +e+ga+idi         Gt+  +  +kea+ ka++ i++i+++ +  +
  MMETSP1174-20130828|28862_1 568 DAVGMVIGRHGIMINKIKDESGANIDIARGqavkgsGTLCRVYGKKEAVAKATEEIKKIITNHQEMN 634
                  7899**********************97643344337765555678888999999999886655444 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.5e-06     0.001     592     642 ..     288     338 ..     259     352 .. 0.85
   2 !    9.4   1.7   9.2e-05     0.063     563     638 ..     330     406 ..     325     418 .. 0.81
   3 !   10.4   0.0   4.8e-05     0.033     593     639 ..     432     478 ..     428     486 .. 0.87
   4 !    4.7   0.5    0.0025       1.7     582     640 ..     486     543 ..     483     560 .. 0.76
   5 !   13.2   0.8   6.5e-06    0.0045     588     618 ..     568     598 ..     563     640 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.5e-06
    TIGR02696 592 evigpkgkvinsiqdetgaeisieddgtvyigaadgdsaeaaraainaian 642
                   vig kg vi si++ +ga + i +d t+     + d+  +a+++++ai +
  MMETSP1174-20130828|28862_1 288 AVIGKKGMVIKSIEESSGARLKIGEDTTICSFLGSPDQVAEAMSQVQAILD 338
                  69***************************7766677788889999999876 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 9.2e-05
    TIGR02696 563 laeaidspdelset.aprviavkipvdkigevigpkgkvinsiqdetgaeisieddgtvyigaadgdsaeaaraain 638
                  ++++ +  d+ s+  a +v++v    dki  v+g kg  i +i +e+ a i  + +    + + dg++ ++a + i 
  MMETSP1174-20130828|28862_1 330 MSQVQAILDHNSDVdANQVTKVVEVGDKIPAVMGKKGANIRKIVEESQAMIKTNRENNSIVVSGDGAQVQKALELIH 406
                  55555555555554266777776667***************************99999999999*******999875 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 4.8e-05
    TIGR02696 593 vigpkgkvinsiqdetgaeisieddgtvyigaadgdsaeaaraaina 639
                  v+g +g +i +iq+etga +++e   t  +   ++d+   a+a++  
  MMETSP1174-20130828|28862_1 432 VLGKQGSTIRAIQEETGARLTMERGSTFVLVEGETDQVAMAVAQLHE 478
                  789********************999988888888888888887765 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0025
    TIGR02696 582 avkipvd.kigevigpkgkvinsiqdetgaeisieddgtvyigaadgdsaeaaraainai 640
                  ++ +p + ++  vig  g +i +i+d++ga + +  dg v ++ ++ + ++ a+ +++ i
  MMETSP1174-20130828|28862_1 486 TIMVPANgHVPAVIGKGGATIRNIRDQSGAAVDLL-DGNVKLTGTEEQVSK-AKVMVDKI 543
                  567777646889********************996.688887777655544.44455544 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 6.5e-06
    TIGR02696 588 dkigevigpkgkvinsiqdetgaeisieddg 618
                  d +g vig +g +in+i+de+ga+i i    
  MMETSP1174-20130828|28862_1 568 DAVGMVIGRHGIMINKIKDESGANIDIARGQ 598
                  679**********************986543 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   2.8    0.0036       2.5      46     127 ..     288     374 ..     283     391 .. 0.65
   2 ?    1.5   0.1      0.11        74     100     130 ..     376     406 ..     371     410 .. 0.85
   3 ?   -0.8   0.0      0.55   3.8e+02      47      65 ..     432     450 ..     425     457 .. 0.74
   4 !   10.4   2.6   0.00019      0.13      29     135 ..     480     594 ..     447     600 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0036
    TIGR01952  46 vAiGkgGanvkkveellgkkvelveesedleefvkn......klapvkvknvkvseknskkva.yvevepedkgvaiGkdGknierake 127
                  + iGk+G+ +k +ee  g ++++ e++ +  +f+        ++++v+    + s+ ++++v  +vev  ++ ++++Gk+G ni +++e
  MMETSP1174-20130828|28862_1 288 AVIGKKGMVIKSIEESSGARLKIGEDT-TICSFLGSpdqvaeAMSQVQAILDHNSDVDANQVTkVVEVG-DKIPAVMGKKGANIRKIVE 374
                  679999999999999999999987765.55555544432211444443333344444555554144444.4568899999999988765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
    TIGR01952 100 kvayvevepedkgvaiGkdGknierakelae 130
                    a+++ ++e++++++  dG ++++a el++
  MMETSP1174-20130828|28862_1 376 SQAMIKTNRENNSIVVSGDGAQVQKALELIH 406
                  45889999******************99986 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.55
    TIGR01952  47 AiGkgGanvkkveellgkk 65 
                   +Gk+G+++++++e  g +
  MMETSP1174-20130828|28862_1 432 VLGKQGSTIRAIQEETGAR 450
                  5788888888888877665 PP

  == domain 4    score: 10.4 bits;  conditional E-value: 0.00019
    TIGR01952  29 vdDedrvvfvvkkgemgvAiGkgGanvkkveellgkkvelveesedleefvkn.klapvkvknvkvsekns..kkvayvevep.....edkgvaiGkdGknierakelaeRhldi 135
                  +d +   ++v ++g++ + iGkgGa++++++++ g  v+l++ + +l    +    a+v v ++   e  +  +++   ev +     +  g++iG++G  i+++k+     +di
  MMETSP1174-20130828|28862_1 480 IDMNAFTIMVPANGHVPAVIGKGGATIRNIRDQSGAAVDLLDGNVKLTGTEEQvSKAKVMVDKIIAEEVAGpwSRLGKGEVCEemnlgDAVGMVIGRHGIMINKIKDESGANIDI 594
                  5554556788899***************************998877766555434566666766666643322333333333311111346889999999999988766665555 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   8.3e+02      51      65 ..     288     302 ..     287     312 .. 0.85
   2 ?    4.1   0.1     0.011       7.6      39      69 ..     348     378 ..     340     400 .. 0.78
   3 ?    3.5   0.1     0.016        11      51      72 ..     431     452 ..     418     482 .. 0.75
   4 ?    6.9   0.1    0.0015         1      50      99 ..     496     545 ..     482     574 .. 0.86
   5 ?    0.0   0.0      0.19   1.3e+02      49      65 ..     570     586 ..     566     600 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.2
    TIGR01008  51 lviGrrGrrirelte 65 
                   viG++G  i+ + e
  MMETSP1174-20130828|28862_1 288 AVIGKKGMVIKSIEE 302
                  59********99987 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
    TIGR01008  39 gtkviifaerpglviGrrGrrireltellkk 69 
                   tkv+   ++   v+G++G+ ir++ e  + 
  MMETSP1174-20130828|28862_1 348 VTKVVEVGDKIPAVMGKKGANIRKIVEESQA 378
                  589999999999************9987765 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.016
    TIGR01008  51 lviGrrGrrireltellkkkfg 72 
                  +v+G++G++ir+++e    +  
  MMETSP1174-20130828|28862_1 431 VVLGKQGSTIRAIQEETGARLT 452
                  579**********997665555 PP

  == domain 4    score: 6.9 bits;  conditional E-value: 0.0015
    TIGR01008  50 glviGrrGrrireltellkkkfglenpqieveevenpeldakvqaekiar 99 
                    viG++G++ir++  +     +l + +++    e++  +akv+  ki +
  MMETSP1174-20130828|28862_1 496 PAVIGKGGATIRNIRDQSGAAVDLLDGNVKLTGTEEQVSKAKVMVDKIIA 545
                  479***************99***********999999999**99998865 PP

  == domain 5    score: 0.0 bits;  conditional E-value: 0.19
    TIGR01008  49 pglviGrrGrrirelte 65 
                   g+viGr+G  i++++ 
  MMETSP1174-20130828|28862_1 570 VGMVIGRHGIMINKIKD 586
                  589**********9976 PP

>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.0    0.0063       4.3     114     253 ..      82     217 ..      52     290 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0063
    TIGR03354 114 laptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddga.lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqaseavaltaflrglgldlelldsqaa 253
                   a++p+t+++++ ++ +++++ ++ +ds t+++  +ap +      ++P++a +  p+++ ++++   ls++++++ a+a  a++a+ +a+++ +p + p+p +++  +++++ +++++   ++ ++++ + +e +++++a
  MMETSP1174-20130828|28862_1  82 KAAKPATQTSSKKSKKKKKKAAATKQDSETTEEVAPAPVE-----IVEPVPAPEPVPEPPVAQEPAKpLSKSAKKKKAKAAAAAAAAAAAAPAPVPVPPPAPVVEKPVEEKPTTSKKKKNKKKKAAKTADVVSEEVKAAEA 217
                  3444444443333333333333333333333333333333.....456666666666666555553346666666666666666666677777777777777777777777777766666677777777776666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       351  (0.085568); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.55
# Mc/sec: 1735.06
//
Query:       MMETSP1174-20130828|28873_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 334.69
//
Query:       MMETSP1174-20130828|28875_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   10.8   0.9      0.035   10.8   0.6    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit


Domain annotation for each model (and alignments):
>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   8.6e-06     0.035     113     161 ..       6      60 ..       3      63 .] 0.73

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.6e-06
    TIGR01317 113 pvtiksielaiidkgfeeGwvkPrppkkrtGkk......vavvGsGPaGlaaadq 161
                  +v    ie a+ +++ e+  v+    +  +G+       +av G GPaG+aaa q
  MMETSP1174-20130828|28875_1   6 AVQTSAIEPAVAENAAEQAHVESASVEPAAGRAyiepagIAVAGIGPAGIAAAVQ 60 
                  5666778888888888888887766666666532223339************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 259.85
//
Query:       MMETSP1174-20130828|28874_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1863.85
//
Query:       MMETSP1174-20130828|28872_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.7   0.0    0.00023   18.5   0.0    1.6  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
    0.00032   16.8   0.0    0.00086   15.4   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-07   0.00023       5     126 ..      81     199 ..      78     212 .. 0.67
   2 ?   -3.5   0.0      0.58   1.2e+03      59      77 ..     252     270 ..     248     291 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-07
    TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryv....kslgdavrlvlgnhdlhllavalgikkvkpkdrldalleapdadellnwlrrqpllvvdeekklvlahagispd 126
                  + gd+hg y +l  l+e   f p+ + l+l gd v rg++s+e++ ++        +   ++ gnh+   +  + g       d  +  ++ +  + +++ + + p+  + +ek + + h g+sp+
  MMETSP1174-20130828|28872_1  81 ICGDIHGQYYDLLRLFEYGGFPPESNYLFL-GDYVDRGKQSMETICLLlaykIKYPENFFILRGNHECASINRIYGFY-----DECKRRYNIKLWKTFIDCFNCLPVAAIVDEKIFCM-HGGLSPE 199
                  68************************9998.9**********975443111034455666666777766666555543.....33333344444555555556666665555554443.6666665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.58
    TIGR00668  59 vrlvlgnhdlhllavalgi 77 
                  v   l  hdl l++ a ++
  MMETSP1174-20130828|28872_1 252 VAQFLRRHDLDLICRAHQV 270
                  5566788999988877665 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.2e-07   0.00086     179     263 ..      76     147 ..      52     157 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.2e-07
    TIGR04075 179 kGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlv..msmvkagaalcvpGnhee 263
                  + P  i Gd+hG + +l +l+e  G+              +p   + +flGd+vdrG++s++++ l    ++    + + ++Gnhe 
  MMETSP1174-20130828|28872_1  76 EAPIKICGDIHGQYYDLLRLFEYGGF--------------PP-ESNYLFLGDYVDRGKQSMETICLLlaYKIKYPENFFILRGNHEC 147
                  57888999999999998888887777..............23.34579************9987655114556677888999***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1494.46
//
Query:       MMETSP1174-20130828|28876_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 334.37
//
Query:       MMETSP1174-20130828|28888_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|28965_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 186.98
//
Query:       MMETSP1174-20130828|28976_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.9   0.0      0.014   12.6   0.0    1.1  1  TIGR01169 rplA_bact: ribosomal protein L1


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.5e-06     0.014      44      72 ..      45      73 ..      37      81 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-06
    TIGR01169 44 iklgvdprksdqqvRgsvvLPngtgksvr 72
                 ++ +++ +k+dq+vR svv P+g  ++ r
  MMETSP1174-20130828|28976_1 45 VQRRLEIEKKDQKVRRSVVEPHGYTRRSR 73
                 4445555888*************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 487.34
//
Query:       MMETSP1174-20130828|29016_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.2   0.0     0.0045   13.4   0.0    1.2  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.1e-06    0.0045      59     118 ..     395     454 ..     390     459 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-06
    TIGR03377  59 areCieenkilkkiakhcveetgGlFiklpeDdleyqkkfleaceeagieaeeldpeeal 118
                   re ++ nkil+ i k+ v +   lF +l eD+++y+k + + +++ ++ ++e ++++a+
  MMETSP1174-20130828|29016_1 395 SRETLQQNKILRVIKKNLVKKSIELFNELAEDEEKYKKFYEAFAKNLKLGIHEDSTNRAK 454
                  6999*********************************99999999999998888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.32
# Mc/sec: 2994.50
//
Query:       MMETSP1174-20130828|29050_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|29052_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-42  140.1   2.3    9.2e-42  139.9   1.6    1.0  1  TIGR01160 SUI1_MOF2: translation initiation factor SUI1
    7.9e-09   33.4   0.3    9.6e-09   33.1   0.2    1.2  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1
    3.1e-08   31.6   0.3    3.7e-08   31.4   0.2    1.1  1  TIGR01159 DRP1: density-regulated protein DRP1
  ------ inclusion threshold ------
      0.015   13.5   0.0       0.02   13.0   0.0    1.2  1  TIGR01878 cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5


Domain annotation for each model (and alignments):
>> TIGR01160  SUI1_MOF2: translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   1.6   8.9e-45   9.2e-42       1     110 []      13     121 .]      13     121 .] 0.97

  Alignments for each domain:
  == domain 1    score: 139.9 bits;  conditional E-value: 8.9e-45
    TIGR01160   1 eienlksfdpfadaskedsvlagteeyihiriqqrnGrktlttvqGlkkeydlkkllkalkkelacnGtvvedaelGeviqlqGdqrkkvkeflieeglvkkdqikihGf 110
                  +i+nl++fd f da ++    +  +e ih+r+qqrnGrk +ttvqGl++++d k++ ka+kk+++cnG+v +d elGeviql Gdqr +v++fl +++++ +  i ihGf
  MMETSP1174-20130828|29052_1  13 NIQNLDTFDAFKDADDGTGK-GKHHEKIHVRVQQRNGRKCITTVQGLPDDLDIKRICKAFKKNFSCNGAVTKDVELGEVIQLSGDQRTNVSQFLYDTEICTDGTIVIHGF 121
                  589*********99887766.89999***********************************************************************************8 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   9.4e-12   9.6e-09      21      93 ..      33     108 ..      10     115 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 9.4e-12
    TIGR01158  21 pkedqvvrirrekkGRkG.kevtiieGldlsdidlkelakeLKskcacGGtvkdg.....viElQGdhrekvkelLekk 93 
                   k+++++++r++++   G k +t+++Gl+ +d d+k++ k+ K++++c G+v ++     vi l Gd+r  v ++L + 
  MMETSP1174-20130828|29052_1  33 GKHHEKIHVRVQQR--NGrKCITTVQGLP-DDLDIKRICKAFKKNFSCNGAVTKDvelgeVIQLSGDQRTNVSQFLYDT 108
                  45667777777766..451679******7.689******************98753333369*************9875 PP

>> TIGR01159  DRP1: density-regulated protein DRP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.2   3.6e-11   3.7e-08      73     154 ..      25     107 ..       7     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 3.6e-11
    TIGR01159  73 asegkkkkkklkqkvvikkiaRaKrk.vvvikGLevFdidlkkasklfakkFatG.svvksvtekeeiviqGDvsddivdlite 154
                   ++ +  k+k+++k+ ++ + R+ rk +++++GL   d+d+k++ k f k F+   +v+k+v+  e i + GD   ++ +++ +
  MMETSP1174-20130828|29052_1  25 DADDGTGKGKHHEKIHVRVQQRNGRKcITTVQGLPD-DLDIKRICKAFKKNFSCNgAVTKDVELGEVIQLSGDQRTNVSQFLYD 107
                  446677899999**************9*******85.***************9755*********************9999876 PP

>> TIGR01878  cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05      0.02      52      93 ..      33      77 ..      14      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2e-05
    TIGR01878 52 gk..syeavavvlkegkari.lvgylptdkevekflrlvredirs 93
                 gk  ++  v+v +++g++ i  v+ lp d +++ + +  ++++  
  MMETSP1174-20130828|29052_1 33 GKhhEKIHVRVQQRNGRKCItTVQGLPDDLDIKRICKAFKKNFSC 77
                 333234679999****96542466****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 570.38
//
Query:       MMETSP1174-20130828|29055_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.21s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1174-20130828|29079_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 743.05
//
Query:       MMETSP1174-20130828|29127_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088   11.3   3.1        0.1   11.1   2.2    1.1  1  TIGR03322 alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C


Domain annotation for each model (and alignments):
>> TIGR03322  alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.2   2.5e-05       0.1       5      46 ..      15      58 ..      11      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.5e-05
    TIGR03322  5 liavasivtaGltiai..GsiGpalgeGravaqalealaqqpda 46
                  iava i  aG++ a+   +i pa++e  a +  +e+ + +p a
  MMETSP1174-20130828|29127_1 15 GIAVAGIGPAGIAAAVqtSAIEPAVAENAAEQAHVESASVEPAA 58
                 59**********99983358*******99999889988888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|29152_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.25s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|29205_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1174-20130828|29242_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.4   4.6      0.028   12.8   3.2    1.3  1  TIGR02300 FYDLN_acid: TIGR02300 family protein


Domain annotation for each model (and alignments):
>> TIGR02300  FYDLN_acid: TIGR02300 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.2   6.7e-06     0.028      26     104 ..      99     178 ..      94     179 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.7e-06
    TIGR02300  26 PvvsPktGesfdleevlksrrvkaadekeavavkevdpeadeaaelvsleeadeevdtGadvPesgddl.aededleddd 104
                    +sP +  +++   v++ +   ++d   a   k   + a+ a+e+  l+e++ ++  Ga+ P+       + ++++ddd
  MMETSP1174-20130828|29242_1  99 EDLSPECASTLPEPVVEEEKEEEVDDATAARRAKRKRARAKAAEEVRNLNEKNSKKGKGAKKPKPSKRSrRKAKAIDDDD 178
                  5689**********************************************************997766636677888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 536.96
//
Query:       MMETSP1174-20130828|29260_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 286.60
//
Query:       MMETSP1174-20130828|29267_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 152.99
//
Query:       MMETSP1174-20130828|29323_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 236.80
//
Query:       MMETSP1174-20130828|29330_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|29353_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 152.30
//
Query:       MMETSP1174-20130828|29397_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 171.59
//
Query:       MMETSP1174-20130828|29416_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|29481_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1174-20130828|29567_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|29573_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|29581_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   13.8   0.0     0.0057   13.7   0.0    1.0  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.021   11.9   0.0    1.1  1  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase
      0.035   11.1   0.0       0.04   10.9   0.0    1.1  1  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.2e-06    0.0057     165     202 ..      48      86 ..      21      90 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.2e-06
    TIGR01122 165 eal.raGydeailLdeeGyvaeGsGenifivkdgvlltP 202
                  eal r+ ++e +l   +G ++eGs  n++ ++dgv++t 
  MMETSP1174-20130828|29581_1  48 EALmRNDINELLLTTASGELVEGSQTNFYAIRDGVVYTA 86 
                  5541567889999999*********************96 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.5e-05     0.021     152     188 ..      50      86 ..      47      88 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.5e-05
    TIGR03461 152 lekseadealvldtegkvvEataaNlfwvkenkvfTp 188
                  l +++++e+l++  +g++vE++ +N + ++++ v+T+
  MMETSP1174-20130828|29581_1  50 LMRNDINELLLTTASGELVEGSQTNFYAIRDGVVYTA 86 
                  5678999****************************96 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.9e-05      0.04     171     193 ..      64      86 ..      47      91 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.9e-05
    TIGR01121 171 delvtegsssnvyaikdgvlyth 193
                   + + egs +n yai+dgv+yt 
  MMETSP1174-20130828|29581_1  64 SGELVEGSQTNFYAIRDGVVYTA 86 
                  46688****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 216.84
//
Query:       MMETSP1174-20130828|29673_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.32
# Mc/sec: 214.48
//
Query:       MMETSP1174-20130828|29703_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1174-20130828|29709_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 250.08
//
Query:       MMETSP1174-20130828|29754_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|29755_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 199.77
//
Query:       MMETSP1174-20130828|29760_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 268.24
//
Query:       MMETSP1174-20130828|29786_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|29829_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 210.36
//
Query:       MMETSP1174-20130828|29944_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-16   57.2   0.1    4.3e-16   57.0   0.1    1.0  1  TIGR00987 himA: integration host factor, alpha subunit
    2.2e-14   51.4   0.1    2.4e-14   51.3   0.1    1.1  1  TIGR00988 hip: integration host factor, beta subunit
    0.00029   18.6   0.2    0.00031   18.5   0.1    1.1  1  TIGR01201 HU_rel: putative DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR00987  himA: integration host factor, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   3.2e-19   4.3e-16       2      91 ..       9      98 ..       8     101 .. 0.95

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 3.2e-19
    TIGR00987  2 ltkaelsealfeelGlskreakelvelvleeirdalergeqvklsgfGnfdlrdkrqrpGrnpktGeeipitarrvvtfrpgqklkdrve 91
                 ++k e+  +l e+ G  k e +e+++l le i d++  g++  + gfG+f+ rd+  r GrnpktGe + i+a + v f  ++ +k+ v+
  MMETSP1174-20130828|29944_1  9 VSKKEFLAMLAEKSGKPKTEIEEVLNLALETIVDTVSSGKKASFVGFGSFEPRDRAARAGRNPKTGEVLQIAATKTVGFIASKNFKESVK 98
                 567788889999**************************************************************************9986 PP

>> TIGR00988  hip: integration host factor, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   1.8e-17   2.4e-14       3      89 ..      11      96 ..       9     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.8e-17
    TIGR00988  3 kselieriateqshlsakdvekavktlleelaealarGdrieirGfGsfslkkraartGrnpktGesveldekyvpffkpGkelrdr 89
                 k e+++ +a++ ++ ++ ++e++++  le ++++++ G++  + GfGsf  + raar+GrnpktGe +++       f + k++++ 
  MMETSP1174-20130828|29944_1 11 KKEFLAMLAEKSGK-PKTEIEEVLNLALETIVDTVSSGKKASFVGFGSFEPRDRAARAGRNPKTGEVLQIAATKTVGFIASKNFKES 96
                 77888888887776.7899*************************************************9986555556666666665 PP

>> TIGR01201  HU_rel: putative DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.3e-07   0.00031      27     118 ..       5      96 ..       1     100 [. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.3e-07
    TIGR01201  27 ksgsvdleeiaeliseeStlspGdVkgildrlakvlrreLasGktvklgeiGsFrlsltakksgveeaeevnaeqvkkar.vnFrpekrlkaa 118
                  k ++v+ +e+   ++e+S+  + ++  +l+ + +++ + ++sGk+ +  + GsF +   a   +  +++  ++ q+++ + v F+++k+ k++
  MMETSP1174-20130828|29944_1   5 KLETVSKKEFLAMLAEKSGKPKTEIEEVLNLALETIVDTVSSGKKASFVGFGSFEPRDRAA-RAGRNPKTGEVLQIAATKtVGFIASKNFKES 96 
                  56789999**********************************************9876655.3344444445555554432667777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 305.97
//
Query:       MMETSP1174-20130828|29945_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-29   97.9   4.0    1.2e-28   97.7   2.8    1.1  1  TIGR01080 rplX_A_E: ribosomal protein L24
      6e-07   27.7   4.3    1.9e-06   26.1   3.0    1.8  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   2.8   5.8e-32   1.2e-28      40     115 ..       1      75 [.       1      76 [. 0.99

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 5.8e-32
    TIGR01080  40 lpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGtevavpihpsnvmiiklklddekrkkllerk 115
                  +p+rk+d+v ++rG+ k +eGkv++v++k+y+i++e++t++k++ + v+++ihpsnv i+klkld++ rk++lerk
  MMETSP1174-20130828|29945_1   1 MPIRKDDEVMVMRGNQKNREGKVIQVYRKKYVIHIERITRDKANQAPVNIGIHPSNVQITKLKLDKD-RKAILERK 75 
                  8******************************************************************.*******8 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   3.0   9.2e-10   1.9e-06       4      49 ..       3      48 ..       1      83 [. 0.77

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 9.2e-10
    TIGR01079  4 ikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpk 49
                 i+k+D+V+v++G++k ++Gkv++v++kk  + +e +   k ++ p 
  MMETSP1174-20130828|29945_1  3 IRKDDEVMVMRGNQKNREGKVIQVYRKKYVIHIERITRDKANQAPV 48
                 9*************************97666677666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|29963_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|29996_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 242.86
//
Query:       MMETSP1174-20130828|30034_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|30044_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1174-20130828|30076_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 969.44
//
Query:       MMETSP1174-20130828|30090_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|30097_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-134  445.0   0.8   5.7e-134  444.7   0.5    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      9e-77  256.7   0.3    1.2e-76  256.3   0.2    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.2e-73  246.4   0.1    1.6e-73  246.0   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      5e-59  198.2   0.7    6.2e-59  197.8   0.5    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.8e-07   28.4   0.0    2.8e-07   27.7   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    7.5e-07   26.2   0.2    8.6e-05   19.4   0.0    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
      1e-06   25.4   0.0    1.6e-06   24.8   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    3.1e-06   24.3   0.0      6e-06   23.3   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.3e-05   22.1   0.3    0.00045   17.0   0.0    2.6  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    2.1e-05   21.0   0.0    3.3e-05   20.4   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
     0.0005   17.0   0.0     0.0011   15.8   0.0    1.6  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0011   15.4   0.0     0.0019   14.6   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0024   14.2   0.0      0.004   13.5   0.0    1.2  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0044   14.4   0.0      0.035   11.5   0.0    2.0  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
       0.01   13.3   0.0      0.019   12.4   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.018   11.5   0.0    1.2  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
      0.017   11.5   0.1       0.14    8.5   0.0    2.0  2  TIGR00764 lon_rel: putative ATP-dependent protease
      0.038   11.0   0.0      0.071   10.2   0.0    1.4  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.7   0.5  2.5e-136  5.7e-134      10     363 ..      37     390 ..      28     391 .. 0.97

  Alignments for each domain:
  == domain 1    score: 444.7 bits;  conditional E-value: 2.5e-136
    TIGR01242  10 kledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                  ++e++ k   +    l +e +   + l+ l+s   +++ v++ ldd+r +vk+s+Gp++vv + + +++++lkpG+rval+  tl+i+  lp e dp+v+ ++ ++   +s+ +iGGl++q+re+re++elpl +pelf++vGi  pkGvllyGppGtGktlla+a+a++++atf++vv+s +v kyiGe ar++re+f +ak+  p++if+de+dai+  r  + ts dre+qrtl++ll +ldGfd++g vk++ atnr+dildpallrpGr+dr ie+plp++  rl+ilkih+  +  ++d+dle + kl++G+ Gadl+ ++teaG+fair +rd+v  edf+ka  k+
  MMETSP1174-20130828|30097_1  37 EMETKLKGNRESVRGLVKEYNDTEDALKALQSVGQIIGDVLKQLDDQRFIVKASSGPRYVVGCRNKLEKDKLKPGTRVALDMTTLTIMRQLPREVDPTVYHMQNDNEKGLSFAEIGGLNDQVRELRETIELPLTNPELFNRVGIAAPKGVLLYGPPGTGKTLLARALASNIEATFLKVVASAIVDKYIGESARIIREMFGFAKDNQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDSLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRLDILKIHSGPITKKGDIDLESVVKLADGFNGADLRNVCTEAGLFAIRGDRDYVVEEDFMKAARKI 390
                  455555544444456899999999**************************************************************************************************************************************************************************************************************************************************************************************************************************************9998 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   0.2   5.2e-79   1.2e-76      44     301 ..     137     395 ..     130     404 .. 0.96

  Alignments for each domain:
  == domain 1    score: 256.3 bits;  conditional E-value: 5.2e-79
    TIGR01241  44 klleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGle 301
                  ++++++++ ++f+++ G++++ +el e ++  L np+ f+++G   PkGvll+GpPGtGktLla+a+a + +  f+++  s  v+ ++G  a  +r++f  ak n Pc+if+De+Da+G +r    +++  e ++tL  lL ++DGf++  +v ++ atnrpd+LD+aLlrPGr+Dr++ + +P+ + r +ilk+h+  ++ + ++dl++v + + Gf Gadl n++ ea l+a r +++ v  +++ +a  ++   ++
  MMETSP1174-20130828|30097_1 137 HMQNDNEKGLSFAEIGGLNDQVRELRETIELpLTNPELFNRVGIAAPKGVLLYGPPGTGKTLLARALASNIEATFLKVVASAIVDKYIGESARIIREMFGFAKDNQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDSLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRLDILKIHSGPITKKGDIDLESVVKLADGFNGADLRNVCTEAGLFAIRGDRDYVVEEDFMKAARKIAENKK 395
                  567888999********************9879******************************************************************************************99999999***********************************************************************************************************************999876554 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.1   7.1e-76   1.6e-73     450     699 ..     146     397 ..     106     404 .. 0.91

  Alignments for each domain:
  == domain 1    score: 246.0 bits;  conditional E-value: 7.1e-76
    TIGR01243 450 vkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdlkvk 699
                  + + +iggl++  +elre++e pl ++e+f+++gi  pkgvll+gppgtgktlla+a+a++ +a f+ v    i+ k++ges + ire+f  a++  p++if+de+dai  +r ++ ++a    +r + +ll +ldg++    v ++ atnrpdildpallrpgrldr i +p p+e +rl+i+kih+  ++   d+dle + k ++g+ gad+  v+ ea l a+r     v +e + +  ++i ++ k++
  MMETSP1174-20130828|30097_1 146 LSFAEIGGLNDQVRELRETIELPLTNPELFNRVGIAAPKGVLLYGPPGTGKTLLARALASNIEATFLKVVASAIVDKYIGESARIIREMFGFAKDNQPCVIFMDEVDAIGGSRFSEGTSAdrEIQRTLMELLNQLDGFDSLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRLDILKIHSGPITKKGDIDLESVVKLADGFNGADLRNVCTEAGLFAIRGDRDYVVEEDFMKAARKIAENKKLE 397
                  56889*********************************************************************************************************99965544432345788899*************************************************************************************************9888888888777777777666654 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.5   2.7e-61   6.2e-59     103     377 ..      66     332 ..      35     379 .. 0.89

  Alignments for each domain:
  == domain 1    score: 197.8 bits;  conditional E-value: 2.7e-61
    TIGR03689 103 aervGeiv.tlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpks...eveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGs.Gvssdvet.tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilaky 377
                   ++vG+i   + + ldd+r +v + ++  +vv   ++l + kl++G ++++d+ +   ++++p++    v ++  ++   +++a+iGGl++q+ ++r+++elP++++el+++ ++ +PkGvllyGPPG+Gktl+a+a+a+ +          ++ fl++    +++ky+Ge+ r ir +f      a++++P v+f+de+d++   r s G s+d e    +  ll +ldG +sl  v ++ a+nr d++dPa+lrPGrld ki i  P++++  dil+ +
  MMETSP1174-20130828|30097_1  66 LQSVGQIIgDVLKQLDDQRFIVKASSGPRYVVGCRNKLEKDKLKPGTRVALDMTTLTIMRQLPREvdpTVYHMQNDNEKGLSFAEIGGLNDQVRELRETIELPLTNPELFNRVGIAAPKGVLLYGPPGTGKTLLARALASNI----------EATFLKVVASAIVDKYIGESARIIREMFGF----AKDNQPCVIFMDEVDAIGGSRFSeGTSADREIqRTLMELLNQLDGFDSLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRLDILKIH 332
                  46788875368899*************************************************972223444555667779******************************************************9987643..........569*************************86....5689****************965599999995246789*************************************************99999866 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.2e-09   2.8e-07     119     207 ..     185     269 ..     165     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 1.2e-09
    TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidki..arksenasitrdv 207
                   +ll Gp G+Gktlla++la +++  f    a+++ +  y+Ge    i+ +++  a    +  +  +i++de+d i  +r se++s  r++
  MMETSP1174-20130828|30097_1 185 GVLLYGPPGTGKTLLARALASNIEATFLKVVASAIVD-KYIGESA-RIIREMFGFA----KDNQPCVIFMDEVDAIggSRFSEGTSADREI 269
                  5899***********************9999988887.6****86.4666666655....567899*********977799****999986 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.8e-07   8.6e-05      46      91 ..     182     226 ..     178     239 .. 0.85
   2 ?    4.6   0.0     0.012       2.7     244     283 ..     239     277 ..     232     292 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.8e-07
    TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGr 91 
                   Pk +l+ G+ G Gkt +ar la  +ea f+kv a+   +  y+G 
  MMETSP1174-20130828|30097_1 182 APKGVLLYGPPGTGKTLLARALASNIEATFLKVVASAIVD-KYIGE 226
                  69*********************************98765.46664 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.012
    TIGR00390 244 rveesGiifideidkiakkgessgadvsreGvqrdllPiv 283
                  + ++  +if+de+d i  +  s g+   re +qr l+ ++
  MMETSP1174-20130828|30097_1 239 KDNQPCVIFMDEVDAIGGSRFSEGTSADRE-IQRTLMELL 277
                  556788**********99986666666666.899988776 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     7e-09   1.6e-06     286     389 ..     156     256 ..     146     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 7e-09
    TIGR03922 286 eqvaalkssvevalvRaerGlavaqrs.kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLve 389
                  +qv+ l++++e+ l+  e    v   + k +ll GPPGtGkt +Ar++a  +       + +   v  + ++ +yiges+    e+   a +    v+F+DE+ a+  
  MMETSP1174-20130828|30097_1 156 DQVRELRETIELPLTNPELFNRVGIAApKGVLLYGPPGTGKTLLARALASNI-------EATFLKVVASAIVDKYIGESARIIREMFGFAKDNqpcVIFMDEVDAIGG 256
                  5677777777777777666666654432678999**************9865.......45667788899*****************9998855559*****988755 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.7e-08     6e-06      30      92 ..     183     253 ..     159     258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.7e-08
    TIGR00635  30 ldhvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal......eegdvlfiDeihr 92 
                     vllyGPPG Gkt la+ +a++++++ lk++++  ++k  g+ a i+ ++      ++  v+f+De+ +
  MMETSP1174-20130828|30097_1 183 PKGVLLYGPPGTGKTLLARALASNIEATfLKVVASAIVDKYiGESARIIREMfgfakdNQPCVIFMDEVDA 253
                  5679*********************9763799999888884245555554432222112334777777765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     2e-06   0.00045      39      67 ..     182     210 ..     169     234 .. 0.89
   2 ?   -1.8   0.0      0.99   2.3e+02     126     141 ..     239     254 ..     223     281 .. 0.80
   3 ?    2.0   0.0     0.071        16     250     283 ..     365     399 ..     358     404 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2e-06
    TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkeleea 67 
                   p+ vl+yG++GtGKt+ ++++  ++e+ 
  MMETSP1174-20130828|30097_1 182 APKGVLLYGPPGTGKTLLARALASNIEAT 210
                  7999******************9999875 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.99
    TIGR02928 126 eredsliivLDEiDkl 141
                  ++++  +i +DE+D +
  MMETSP1174-20130828|30097_1 239 KDNQPCVIFMDEVDAI 254
                  5667788999999987 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.071
    TIGR02928 250 eageiAeeegsekvteehvekAqeki.ekerllel 283
                  eag  A + +++ v ee+  kA +ki e ++l+ +
  MMETSP1174-20130828|30097_1 365 EAGLFAIRGDRDYVVEEDFMKAARKIaENKKLEST 399
                  7999*********9999999999998455555554 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   3.3e-05     356     437 ..     186     259 ..     176     279 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvkten.P.lillDEiDKlgssvr 437
                  + l+GPPG GKt la+++A+ ++ +f+++    + D          Y+G    +ii  +    + n P +i++DE+D +g s  
  MMETSP1174-20130828|30097_1 186 VLLYGPPGTGKTLLARALASNIEATFLKVVASAIVDK---------YIGE-SARIIREMFGFAKDNqPcVIFMDEVDAIGGSRF 259
                  679**************************99999995.........9997.479998887655444364778999999985543 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     5e-06    0.0011      46     117 ..     187     254 ..     153     273 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5e-06
    TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysl 117
                  ++ G PGtGkt +ar la+ ++         +++v  + +v +yiG++a+ +re+    k  +  v+f+de  ++
  MMETSP1174-20130828|30097_1 187 LLYGPPGTGKTLLARALASNIE-------ATFLKVVASAIVDKYIGESARIIREMFgfaKDNQPCVIFMDEVDAI 254
                  6789************998543.......4678888999***************863337778899****97654 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.5e-06    0.0019     207     233 ..     179     205 ..     176     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.5e-06
    TIGR00368 207 aaaGghnllllGPPGsGktllakrlqg 233
                   +a    +ll GPPG+Gktlla+ l +
  MMETSP1174-20130828|30097_1 179 GIAAPKGVLLYGPPGTGKTLLARALAS 205
                  57778889***************9876 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05     0.004     166     194 ..     174     202 ..     157     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
    TIGR02903 166 llaklaspfpqhiilyGppGvGkttaarl 194
                  l+ ++    p+ ++lyGppG Gkt  ar 
  MMETSP1174-20130828|30097_1 174 LFNRVGIAAPKGVLLYGPPGTGKTLLARA 202
                  677888889*****************995 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00015     0.035      38     106 ..     183     258 ..     170     265 .. 0.69
   2 ?    0.1   0.0      0.47   1.1e+02     196     208 ..     271     283 ..     263     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00015
    TIGR03420  38 erllylwGesgsGksHLLqAacaaaeeagksai...ylp..lkelaqllvev..legleqaelvalDdvealager 106
                   + + l+G++g+Gk+ L +A+++++e++  +++    ++  + e a++  e+  +++++q  ++ +D+v+a+ g+r
  MMETSP1174-20130828|30097_1 183 PKGVLLYGPPGTGKTLLARALASNIEATFLKVVasaIVDkyIGESARIIREMfgFAKDNQPCVIFMDEVDAIGGSR 258
                  56688*****************999987665541113441122333333466445566677788899999998876 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.47
    TIGR03420 196 rsLlelLdaLdka 208
                  r+L+elL++Ld +
  MMETSP1174-20130828|30097_1 271 RTLMELLNQLDGF 283
                  5899999999975 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   8.6e-05     0.019      14      39 ..     183     208 ..     177     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.6e-05
    TIGR00678  14 ahAlLfaGpeGvGkealaealakall 39 
                  ++ +L++Gp+G+Gk+ la+ala+++ 
  MMETSP1174-20130828|30097_1 183 PKGVLLYGPPGTGKTLLARALASNIE 208
                  6789******************9876 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     8e-05     0.018      85     106 ..     182     203 ..     118     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8e-05
    TIGR02902  85 npqhviiyGppGvGktaaarlv 106
                   p+ v++yGppG Gkt  ar  
  MMETSP1174-20130828|30097_1 182 APKGVLLYGPPGTGKTLLARAL 203
                  5899************999954 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00063      0.14      38      60 ..     184     206 ..     177     226 .. 0.85
   2 ?    0.5   0.0      0.16        36     359     392 ..     358     392 ..     354     402 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00063
    TIGR00764  38 rnvlliGePGvGksmlakamael 60 
                  + vll G PG+Gk++la+a+a  
  MMETSP1174-20130828|30097_1 184 KGVLLYGPPGTGKTLLARALASN 206
                  579****************9965 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.16
    TIGR00764 359 elggvvraagdiavkkgkkyvtredvleal.klak 392
                  +l +v   ag  a++ +++yv +ed ++a  k+a+
  MMETSP1174-20130828|30097_1 358 DLRNVCTEAGLFAIRGDRDYVVEEDFMKAArKIAE 392
                  7889999******************9997525654 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00031     0.071      38      60 ..     185     207 ..     156     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00031
    TIGR02397  38 ayLfsGprGvGKTsiArilAkal 60 
                    L++Gp G+GKT +Ar lA  +
  MMETSP1174-20130828|30097_1 185 GVLLYGPPGTGKTLLARALASNI 207
                  5699****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.57u 0.20s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 1370.66
//
Query:       MMETSP1174-20130828|30118_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|30169_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.2   0.5      0.037   10.9   0.4    1.1  1  TIGR04152 exosort_VPLPA: exosortase D, VPLPA-CTERM-specific


Domain annotation for each model (and alignments):
>> TIGR04152  exosort_VPLPA: exosortase D, VPLPA-CTERM-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   9.1e-06     0.037      36     109 ..      80     153 ..      70     167 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.1e-06
    TIGR04152  36 pskaswpgvlllllalallllgelgeiedvvayalilavagvllvllGwaklkvvllpvvllllmlPlpqflys 109
                  ++ ++++g+   + +++++l++  g+ e + ++a   +v gv+ + +G  + k  l+ v+l +++l + +++ys
  MMETSP1174-20130828|30169_1  80 RKCTIIAGIYTCVWGVLMILAAARGSSEIMRSLATASMVHGVTCLAMGAIENKSNLFLVALPFIILDIGAIIYS 153
                  5556789**************************************************99999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1055.91
//
Query:       MMETSP1174-20130828|30228_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-31  105.2   1.6      1e-30  104.3   1.1    1.4  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   1.1   2.5e-34     1e-30       5     142 ..      80     222 ..      78     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 2.5e-34
    TIGR01071   5 LkpakgakkkkkrvgRGigsGkGktsgrGqkGqkaRsggkvrlgFEGGqtPlyrrlPkrgfsnk....lkkelevvnvekleklfkdgevvtlekLl.ekklikkknklvKvlgkgk.lekkltvkaekvsksakakiekaggs 142
                  ++pa g+++kk+r gRGi++G+G+t+g G++Gq +Rsg+  r+gFEGGq Plyrr Pk   +      ++  ++ +++++l++ ++  ++vt+ +L+ ++k  +k  +  K++g g+  +k+l+v+a+++++sa+a+ie+ gg+
  MMETSP1174-20130828|30228_1  80 VRPAPGSRHKKTRKGRGISAGQGATCGFGMRGQSSRSGRPERPGFEGGQNPLYRRTPKLRGRPLgpghKRVIYKPIKLDSLNSNADG-STVTTVELVtATKQPNKCGAIYKIVGGGElTAKNLVVNAHAFTASARAAIEENGGT 222
                  67899*****************************************************55555446445667999*******96655.5666655550555555555559*******445789******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1324.29
//
Query:       MMETSP1174-20130828|30244_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|30298_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1174-20130828|30300_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|30313_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1001.30
//
Query:       MMETSP1174-20130828|30324_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|30373_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1079.48
//
Query:       MMETSP1174-20130828|30403_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|30428_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00085   17.1   0.1    0.00097   16.9   0.1    1.1  1  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.4e-07   0.00097      27      73 ..       2      48 ..       1      50 [. 0.69

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.4e-07
    TIGR02953 27 aMkkdamkkDaMkkdamakdaMskDamkkdamkkdamkkdgMkkDaM 73
                 aM+ + m++  M + am+   M++ +m ++am+   m++  M + aM
  MMETSP1174-20130828|30428_1  2 AMQPPPMQQYNMPQSAMQPPPMQQYNMPQSAMQPPLMQQYNMPQSAM 48
                 56777777777777777777777777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1174-20130828|30481_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1068.69
//
Query:       MMETSP1174-20130828|30536_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1174-20130828|30545_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 190.06
//
Query:       MMETSP1174-20130828|30546_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 203.33
//
Query:       MMETSP1174-20130828|30547_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 504.66
//
Query:       MMETSP1174-20130828|30580_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 258.24
//
Query:       MMETSP1174-20130828|30588_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.54
# Mc/sec: 144.21
//
Query:       MMETSP1174-20130828|30621_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.93
# Mc/sec: 97.93
//
Query:       MMETSP1174-20130828|30722_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|30726_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1174-20130828|30826_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   15.5  30.7    0.00069   15.3  21.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00082   15.0  28.3    0.00096   14.7  19.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.21    8.6  22.9       0.05   10.7   5.6    2.0  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.33    7.9   7.5       0.92    6.4   0.2    1.8  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
       0.66    6.2  16.3       0.83    5.9   4.7    2.0  2  TIGR03545 TIGR03545: TIGR03545 family protein
       0.92    6.0  18.3       0.55    6.7   6.7    2.3  2  TIGR03017 EpsF: chain length determinant protein EpsF
        1.7    6.6  19.5       0.85    7.6   6.1    2.4  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        2.8    4.7  23.2        1.5    5.6   4.9    2.1  2  TIGR00414 serS: serine--tRNA ligase
          3    4.5  22.6        4.9    3.8  15.7    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        5.3    3.7  19.1          2    5.1   2.0    2.0  2  TIGR00019 prfA: peptide chain release factor 1
        5.9    2.8  20.7       0.69    5.9   5.5    2.2  2  TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
        9.3    2.3  12.6         13    1.8   8.7    1.3  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  21.3     2e-06   0.00069     291     449 ..       4     161 ..       1     167 [. 0.21

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-06
    TIGR02168 291 qelkaeisrleqeieilkerleqlekeleeleeqle.eleskkeeleeelaeleeeleelkeelesleaeleea.eaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleelee 449
                  ++ ka++++le++++ ++e l+ ++++ +e  ++l+  +++++++l++e+++++e+l++l+ee+ +  ++le+a +a ++e+++   ele++ e++ s  +e++e l +++++ + l++e e+l++++ rl++e++e +++    ++e++e ++e+++l+ 
  MMETSP1174-20130828|30826_1   4 EASKANVADLEKKLNATSEALNTAKRTHKEEITRLNgSHNEELQRLNQEFEASKEQLASLTEEHSAKVEALETAkHAHRRESSRLTGELEAHKEAVVSLTSEHSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSETNAQ---YKHEVEEYNKEVDQLKS 161
                  222222222222222222222222222222111111011222222222222222222222222222222222110111122222222222222222222222222222222222222222222222222222222222111...11222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7  19.6   2.8e-06   0.00096     334     494 ..       5     164 ..       1     167 [. 0.41

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.8e-06
    TIGR02169 334 klkeeieelereieeekkereklkeelkelkeeleel.raeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelr.klkeeleklekelselerela 494
                  + k+++++le+++++     +  k   ke+ ++l+ +  +el+ +++e+++++e+l++l e+ ++  e l+  k   +r   e+ rl+ el+ +k+++ ++ +++ e+  e +++a  + k++++l++    l+k+++e   + k+e+e+++ke+ +l++el+
  MMETSP1174-20130828|30826_1   5 ASKANVADLEKKLNATSEALNTAKRTHKEEITRLNGShNEELQRLNQEFEASKEQLASLTEEHSAKVEALETAKH-AHR--RESSRLTGELEAHKEAVVSLTSEHSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSETNaQYKHEVEEYNKEVDQLKSELS 164
                  333333333333333333333332222222222222201223333333333333333333322222222222221.111..1344446666666666666666666666666666666666666666666666665555431445666666666666666665 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.7     0.026       8.7      69     141 ..      15      86 ..       2     110 .. 0.41
   2 ?   10.7   5.6   0.00015      0.05      70     122 ..     112     164 ..      91     168 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.026
    TIGR03752  69 kelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkled 141
                  k+l+ + ++l++  ++ k+e +rl+ ++++  +r++q++ea k++l++ +e+ +++++ le++ ++++++ + 
  MMETSP1174-20130828|30826_1  15 KKLNATSEALNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASLTEEHSAKVEALETA-KHAHRRESS 86 
                  333333334444444444444444444444444444444444444444444433333333222.122222222 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
    TIGR03752  70 elrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlk 122
                  e++k++++l+keNe+lkke  rl+k++++++ + ++++e ++ke+++ k++l+
  MMETSP1174-20130828|30826_1 112 EHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKSELS 164
                  5789999************************************9999887765 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0027      0.92     176     231 ..      85     140 ..      79     158 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0027
    TIGR00996 176 laqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsda 231
                  +++lt +l ++ e++ +l+   + vl+   +++ +ld+ ++nl++ + +l++++++
  MMETSP1174-20130828|30826_1  85 SSRLTGELEAHKEAVVSLTSEHSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSE 140
                  67899999999999999999999999999999999999999999998888888765 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.3    0.0027      0.94     220     281 ..       2      63 ..       1      67 [. 0.77
   2 ?    5.9   4.7    0.0024      0.83     112     189 ..      82     161 ..      67     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0027
    TIGR03545 220 eldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkkapqkDlkrleekyalkegdlknl 281
                  el++ k+++ +  +k++  +++l++++   k+++ +l     + l+rl++ ++  + +l +l
  MMETSP1174-20130828|30826_1   2 ELEASKANVADLEKKLNATSEALNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASL 63 
                  56777888888888888888888888888888888888888888888888888666666555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0024
    TIGR03545 112 RstsGavp...kkvdeepskkpseikeqlkselkkvdvslpdprellkredLktveaaeeiekslkakqakwkkrkksLpn 189
                  R  s ++    +  +e + + +se +e l +  kk   +l++ +e lk+e L   +   e+++++k++ +  +k+ ++L +
  MMETSP1174-20130828|30826_1  82 RRESSRLTgelEAHKEAVVSLTSEHSEVLGEHQKKA-TDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKS 161
                  555555555444666677777777888888887777.89****************************************55 PP

>> TIGR03017  EpsF: chain length determinant protein EpsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   5.0    0.0082       2.8     273     344 ..      34     109 ..       3     110 .. 0.66
   2 ?    6.7   6.7    0.0016      0.55     271     367 ..      65     165 ..      59     168 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0082
    TIGR03017 273 lsqklgknh.PqykrakaelaslkskLnaeikkvt...ssvetssrvakqreaelkealekqkakvlelkrqrdel 344
                     +l+  h  + +r++ e +  k +L   +++ +   +++et+++++++  + l   le+ k+ v+ l +++ e+
  MMETSP1174-20130828|30826_1  34 EITRLNGSHnEELQRLNQEFEASKEQLASLTEEHSakvEALETAKHAHRRESSRLTGELEAHKEAVVSLTSEHSEV 109
                  3333444441456778888888888876655544400155667777778888899999999999999999998775 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0016
    TIGR03017 271 aelsqklgknhPqykrakaelaslkskLnaeikkvtssvetssrv...akqreaelkealekqkakvlelkrqrdels.vLqkdveaaqrafdaalqrysq 367
                  +e s+k++      ++ + e  +l ++L+a+ + v s  +  s+v   ++++ ++l +  e+ k++vl l++++ e +   +++ve+  +++d     +s+
  MMETSP1174-20130828|30826_1  65 EEHSAKVEALETAKHAHRRESSRLTGELEAHKEAVVSLTSEHSEVlgeHQKKATDLDKENENLKKEVLRLNKEQSETNaQYKHEVEEYNKEVDQLKSELSR 165
                  57788888888888888999999999**999888888777777773335788899****************988776515799*******99988776665 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.6      0.02       6.9      94     153 ..      19      79 ..       4      87 .. 0.72
   2 ?    7.6   6.1    0.0025      0.85      61     146 ..      72     157 ..      69     165 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.02
    TIGR02894  94 etlee.aeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrark 153
                   t e+ +++ r++ke++++ + s +++ ++L++e e  k++   + e++ + ++ ++ a++
  MMETSP1174-20130828|30826_1  19 ATSEAlNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASLTEEHSAKVEALETAKH 79 
                  3333303445667778888888888888899999999999999999999999988888775 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0025
    TIGR02894  61 eaielakk.qrkerkraaesltled..viefLqnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlik 146
                  ea+e ak+ +r+e+ r + +l  ++  v+++  +   + e   + +k+ + l +e+e+l+k++ +L+ke+ + + + +   e+y+  ++
  MMETSP1174-20130828|30826_1  72 EALETAKHaHRRESSRLTGELEAHKeaVVSLTSE---HSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVD 157
                  6788888636777888777776543114444333...3345677778888888888888888888888888888888887788876665 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.9    0.0044       1.5      31      87 ..      20      76 ..       2      94 .. 0.47
   2 ?    4.2   6.6     0.012         4      28      86 ..     106     164 ..      77     167 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0044
    TIGR00414 31 klselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeelee 87
                   ++l+++ + ++++i++l++ +ne  ++++++ + +k+++++l++e + + e le 
  MMETSP1174-20130828|30826_1 20 TSEALNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASLTEEHSAKVEALET 76
                 122334444444444555555555555555444444444444444444444444444 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.012
    TIGR00414  28 dleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeele 86 
                  + e l e ++k  +l+++ e+l+k+  +l+ke  + +a+ k+++ee +ke+++lk+el+
  MMETSP1174-20130828|30826_1 106 HSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKSELS 164
                  23333444444444555555555555555555555555555555555555555555554 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  15.7     0.014       4.9     118     261 ..      18     163 ..       1     167 [. 0.43

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.014
    TIGR01843 118 sae.davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqlelise.elealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeel 261
                  +a+ +a++++  ++++++++ + +++++l++l+++ + ++++l++l+++  a  + le ++    + ++ L+ +    + ++ +l  e  e+ ge +++  +l k +++l++  ++l++ +++  +++++e++e ++++++l+ el
  MMETSP1174-20130828|30826_1  18 NATsEALNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASLTEEHSAKVEALETAKHaHRRESSRLTGELEAHKEAVVSLTSEHSEVLGEHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKSEL 163
                  22212333444444444444444444555555555555555555554444444444444433123333444444444444555555555555555555555555555555555555555555555555555555555555554444 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.0    0.0058         2      46     102 ..       7      63 ..       2      68 .. 0.89
   2 ?    4.4   6.0     0.009       3.1      22     101 ..      86     165 ..      65     173 .] 0.74

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0058
    TIGR00019  46 leeivkkyeeykklqedlkeakellekedkelrelakeeleelekkieeleeqlkvl 102
                   +++ +  ++++ ++e l++ak+  ++e   l+   +eel++l+++ e  +eql  l
  MMETSP1174-20130828|30826_1   7 KANVADLEKKLNATSEALNTAKRTHKEEITRLNGSHNEELQRLNQEFEASKEQLASL 63 
                  5678889999***************9999*******************999999765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.009
    TIGR00019  22 elLsdpevisdqkklrklskeysq.leeivkkyeeykklqedlkeakellekedkelrelakeeleelekkieeleeqlkv 101
                  + L+  e+ + ++ + +l+ e+s+ l e +kk +++ k +e+lk+    l+ke+ e +   k+e+ee +k++++l+++l  
  MMETSP1174-20130828|30826_1  86 SRLT-GELEAHKEAVVSLTSEHSEvLGEHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKSELSR 165
                  4443.466666677777777776625678889999********9998889999***********************99964 PP

>> TIGR03007  pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.5     0.002      0.69     278     347 ..       4      81 ..       2      84 .. 0.75
   2 ?    1.8   3.9     0.033        11     212     268 ..     109     161 ..      82     167 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.002
    TIGR03007 278 iavkreiaeLeerkeeele........geksgseeessa......npvyqqlqielaeaeaeiaslearvaelearierlesll 347
                   a k+++a Le++ ++  e        ++++              n  +q l++e ++ + ++asl ++ +++ + +e+ +++ 
  MMETSP1174-20130828|30826_1   4 EASKANVADLEKKLNATSEalntakrtHKEEI------TrlngshNEELQRLNQEFEASKEQLASLTEEHSAKVEALETAKHAH 81 
                  5789999****998877776555332222222......1345555999************************999999998875 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.033
    TIGR03007 212 eLeearlelkeakaqrdalkrqlageepvllaeesvasseldsriealekqLdeLrl 268
                   L     e +++ + +d  +  l+ e   l+ e+s ++ ++++++e+ +k+ d+L+ 
  MMETSP1174-20130828|30826_1 109 VLG----EHQKKATDLDKENENLKKEVLRLNKEQSETNAQYKHEVEEYNKEVDQLKS 161
                  333....33333333333334444333445555888888888888888888888875 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   8.7     0.038        13     193     312 ..      21     141 ..       3     168 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.038
    TIGR03591 193 leaiefgheeikevieaie.elakevgkekleveak.eedeelkkkveelaeekelkealkieekqereealeevkeevleelaeeeee.eeeeeeekeikellkelekklvRerilkekkRi 312
                   ea+++++++ ke i+  + +  +e+++ ++e+ea+ e+ ++l+++ ++++e+ e+++ ++ +e ++ + +le+ ke+v++ ++e++e   e++++++++++  ++l+k+++R +  ke++  
  MMETSP1174-20130828|30826_1  21 SEALNTAKRTHKEEITRLNgSHNEELQRLNQEFEASkEQLASLTEEHSAKVEALETAKHAHRRESSRLTGELEAHKEAVVSLTSEHSEVlGEHQKKATDLDKENENLKKEVLRLN--KEQSET 141
                  4677777777777666555155667777888888774555667777777777555555565666666677888888888887777766676777888999999999999999965..333334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.21s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 300.45
//
Query:       MMETSP1174-20130828|30829_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.76    5.9  11.2       0.89    5.7   7.8    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
       0.91    6.3  10.8        1.1    6.0   7.5    1.0  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit
       0.94    6.8  10.3       0.62    7.4   0.9    2.7  3  TIGR00373 TIGR00373: TIGR00373 family protein
        2.8    4.1  13.1        3.2    3.9   9.1    1.0  1  TIGR00763 lon: ATP-dependent protease La
          3    3.7   6.9        3.4    3.5   4.8    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.8    0.0011      0.89     226     300 ..      12      85 ..       2      96 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0011
    TIGR03591 226 akeedeelkkkveelaeekelkealkieekqereealeevkeevleelaeeeeeeeeeeeekeikellkelekkl 300
                   + + ++lk+ ++e+a++k+l++a ++  k+e +++++++k+++ e++ +++ ++ +++ +ke +e +k+l+k+l
  MMETSP1174-20130828|30829_1  12 GNDQIKQLKALLDEKASQKQLSDAKAVM-KKEGNDQIKQLKKSLDEKIDQKQLNDAKAMMKKEGNEQIKQLKKSL 85 
                  3345577888888888888888888776.8888999999999999999998888777777888888888777653 PP

>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.5    0.0013       1.1     283     360 ..      13      91 ..       3      97 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0013
    TIGR00237 283 karleqlaaslkrqspknklaakeakleklekrlqaalekqlertrqkktrlt.krleqlnpspklkraqtrleqlerr 360
                  + +++ql+a l ++  +++l   +a ++k  +  + +l+k l+++  +k++ + k + +++ ++++k+ ++ le+   +
  MMETSP1174-20130828|30829_1  13 NDQIKQLKALLDEKASQKQLSDAKAVMKKEGNDQIKQLKKSLDEKIDQKQLNDaKAMMKKEGNEQIKQLKKSLEEKVDQ 91 
                  4577888888888888888887777777777777777888887776666655414445556677888777777765443 PP

>> TIGR00373  TIGR00373: TIGR00373 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.15   1.3e+02      82     102 ..       4      24 ..       1      30 [. 0.75
   2 ?    4.6   0.5    0.0054       4.4      79     102 ..      32      55 ..      24      63 .. 0.84
   3 ?    7.4   0.9   0.00075      0.62      78     103 ..      62      87 ..      58      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.15
    TIGR00373  82 vlevvkrkleelvkklrekle 102
                  ++ v++++ ++ +k+l+  l+
  MMETSP1174-20130828|30829_1   4 AKAVMQKEGNDQIKQLKALLD 24 
                  567889999999999987765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0054
    TIGR00373  79 lekvlevvkrkleelvkklrekle 102
                  l  ++ v+k++ ++ +k+l++ l+
  MMETSP1174-20130828|30829_1  32 LSDAKAVMKKEGNDQIKQLKKSLD 55 
                  5667899*************9987 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00075
    TIGR00373  78 elekvlevvkrkleelvkklreklef 103
                  +l+ ++ ++k++ +e +k+l++ le 
  MMETSP1174-20130828|30829_1  62 QLNDAKAMMKKEGNEQIKQLKKSLEE 87 
                  5677889*****************95 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   9.1    0.0039       3.2     178     252 ..      14      93 ..       3      97 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0039
    TIGR00763 178 keveekqevleevnvekRLkkvlellkkel..elaklqekiakkveeklekeqreylL...keqlkaikkElGeekdkkd 252
                  +++++ +++l+e   +k L+++ +++kke   ++++l++++++k+++k  ++ +  +    +eq+k++kk l e+ d+k+
  MMETSP1174-20130828|30829_1  14 DQIKQLKALLDEKASQKQLSDAKAVMKKEGndQIKQLKKSLDEKIDQKQLNDAKAMMKkegNEQIKQLKKSLEEKVDQKQ 93 
                  45789999*******************997447999*********999888888887622258********999988875 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.8    0.0041       3.4     423     488 ..      22      87 ..       3      97 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0041
    TIGR01816 423 elkenaeeesvkrldklraaegkervaelrkelqksmqnhvavfrteevlkkgvekiselkerlkr 488
                   l+e+a ++ ++  + + ++eg++++++l+k+l + ++++     +  + k+g e+i++lk+ l++
  MMETSP1174-20130828|30829_1  22 LLDEKASQKQLSDAKAVMKKEGNDQIKQLKKSLDEKIDQKQLNDAKAMMKKEGNEQIKQLKKSLEE 87 
                  345666677777778899999999999999999999988764444444445677888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       747  (0.182106); expected 82.0 (0.02)
Passed bias filter:                      291  (0.070941); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 300.81
//
Query:       MMETSP1174-20130828|30827_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1183.90
//
Query:       MMETSP1174-20130828|30828_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-147  487.4   0.2   9.5e-147  487.1   0.1    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase
     0.0011   16.4   0.1     0.0023   15.4   0.1    1.5  1  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase
     0.0077   13.5   0.0       0.02   12.2   0.0    1.6  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.1   0.1    7e-150  9.5e-147       1     451 [.       9     454 ..       9     468 .. 0.92

  Alignments for each domain:
  == domain 1    score: 487.1 bits;  conditional E-value: 7e-150
    TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklg.kpvaillDtkGpeiRvgeikk...eevklkkgekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedkvivevknggelkskkgvnlpgaevslpalsekDkkdlk.fgveqgvdlvaaSFvrkaedvkevrevleekgakdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskakkssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvdeeeeelekalkkalellkekgilkkgd 451
                  ++tkI +T+GPa   +e+l  l+daG+nv+R+NfSHg+he+h   +e+vr +a++   ++v+illDtkGpeiR+g +++   +++klk g ++ lttd  + +g+e+k++ +y++l+  vk+G +il+ DG + l+V+e  e++v+++++n+  + ++k +nlpg++v+lp+l+ kD +dl+ fgv+++vd+vaaSFv++  d+k +re+l e+g+ +++iiaKiEnqeg++n+d+I++ +dgimvARGDLG+eip+  v++ Qk+++ kcr  gk+v++ATqm++Smi+nprPTRAE+sDvanAvldG+davMLSgEta+G++  +aV++ma++++eae+  +   + k+  ++ ++ +s + ++al+av+ ae ++ak+i +++   + +r +++++p+a+ii+ t++ + arq++ +   + ++v ++++      ++ l+   + g+++ gd
  MMETSP1174-20130828|30828_1   9 KKTKIFCTLGPACWDTETLVTLVDAGMNVARFNFSHGDHESHGACLERVRAAAAQRPnRQVGILLDTKGPEIRTGFFQDkcgGKIKLKAGATLELTTDY-SYKGDETKFACTYEKLPVSVKPGCSILIADGSLVLTVLECLETSVMCRIENDQSIGERKNMNLPGVKVELPVLQPKDVNDLQnFGVTNNVDFVAASFVQTGDDIKFIRETLGEAGK-NIQIIAKIENQEGLDNFDDILEETDGIMVARGDLGMEIPLSRVFYEQKTMVDKCRAKGKMVVVATQMMESMISNPRPTRAEASDVANAVLDGADAVMLSGETANGDFGQAAVSIMAETCREAEASGA--GTWKRV-HAPPSCTSPAASLALGAVKCAEAMEAKMIAIVSDRNDVVRYVANLQPDAKIILATADAQFARQCEGTLDNTYCVVTDTPSA-----AECLKHGVALGVVAAGD 454
                  69************************************************988776549******************998889*************987.889******************************************************************************66*******************************66.****************************************************************************************************************************976..444443.4568999999*****************************************************987766555555455555.....34444445555555555 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.7e-06    0.0023     130     174 ..     216     258 ..     199     266 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.7e-06
    TIGR03239 130 dyfkkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdla 174
                  + + +  +ni ++ +ie ++g+d+ d+i   +  dg++v  +dl 
  MMETSP1174-20130828|30828_1 216 ETLGEAGKNIQIIAKIENQEGLDNFDDIL--EETDGIMVARGDLG 258
                  55667789********************7..5679****999996 PP

>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.4e-05      0.02     129     177 ..     214     260 ..     201     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
    TIGR02311 129 ipdylqqadeeiclllqvetrealenleeiaaveGvdGvfiGPadlaas 177
                  i + l +a ++i ++ ++e++e+l+n+++i+  e  dG+++   dl  +
  MMETSP1174-20130828|30828_1 214 IRETLGEAGKNIQIIAKIENQEGLDNFDDIL--EETDGIMVARGDLGME 260
                  667788999*********************7..6789***999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 1934.47
//
Query:       MMETSP1174-20130828|30832_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-10   36.5   0.1    0.00084   17.2   0.0    4.0  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.32   1.3e+03      11      20 ..      17      26 ..      17      27 .. 0.89
   2 !   17.2   0.0     2e-07   0.00084       2      34 ..      86     118 ..      85     119 .. 0.94
   3 !    3.8   0.0    0.0038        16       8      22 ..     126     140 ..     125     141 .. 0.89
   4 !   10.6   0.0   2.6e-05      0.11       1      32 [.     154     185 ..     154     188 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.32
    TIGR00756 11 ckagrveeAl 20
                 c++++++eA+
  MMETSP1174-20130828|30832_1 17 CQNRKTNEAI 26
                 99******98 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2e-07
    TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                  ++++ i ++++ag++++ ++l+d ++ rg+  +
  MMETSP1174-20130828|30832_1  86 SFSAAIGACGNAGQWDKSIQLLDTIRNRGMQLN 118
                  89999************************9987 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0038
    TIGR00756   8 sglckagrveeAlel 22 
                  s+++k g++ +A el
  MMETSP1174-20130828|30832_1 126 SACGKGGQWQKAPEL 140
                  69**********875 PP

  == domain 4    score: 10.6 bits;  conditional E-value: 2.6e-05
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergiv 32 
                  +++++ is++   +++ eA++++ + +e+g+ 
  MMETSP1174-20130828|30832_1 154 ISFSAAISACQSCRQYGEAIRVYLQAIESGLL 185
                  58999***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1219.76
//
Query:       MMETSP1174-20130828|30838_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|30834_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-103  342.0   0.1   5.7e-103  341.8   0.1    1.0  1  TIGR00212 hemC: porphobilinogen deaminase


Domain annotation for each model (and alignments):
>> TIGR00212  hemC: porphobilinogen deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.8   0.1  1.4e-106  5.7e-103       1     286 [.      59     348 ..      59     355 .. 0.96

  Alignments for each domain:
  == domain 1    score: 341.8 bits;  conditional E-value: 1.4e-106
    TIGR00212   1 lrigtRgSkLAlaQanlvkeqlkevy....peleteiviiktkGdkiqdkplskiggkglFtkeleeallegeiDlaVHSlKDvptvlseglelaavlkRedprDvlvsrkalsleeLpkgakvGtssvRRkaqlkalrpdlkieslRGNvdtRlkkleegeldaiiLaaAGlkRlgledvitevldpeellpavgqGalavevrkddeelkeilkelsdeetavevtaERaflkeleggCsvpigvyaeveenklklkavvlsrdgkevikeekegnkeeakelgleva 286
                  + igtRgS+LAlaQa l ++ l e++    pe +++i++ikt+Gd+++dk l+++ggkglFtkel+  ll++e+D+ VHS+KDvpt l +++ l ++l+Red rDv++s ka +le+Lp+g+++G++s+RR+aq+ a+ p lk++++RGNv+tRl+kl++ge+da++La AGlkR+++ + it++l++ee+lpa+ qGa+++++r+dde++++ +  l+++et+++v +ERafl++l+g+C++pi++ a++ +  l++++ ++++dg+e+++ e +g+ e+a+++g+++ 
  MMETSP1174-20130828|30834_1  59 ITIGTRGSPLALAQAYLTQKLLGEAFeelaPEGAVKIQTIKTTGDMVLDKALKDLGGKGLFTKELDVCLLNKEVDICVHSMKDVPTWLVPNTVLPCLLEREDTRDVFISPKADRLEDLPDGSVIGSASLRRQAQILAKNPTLKVVNFRGNVQTRLRKLDDGEVDATLLALAGLKRMDMTEFITSTLEQEEMLPAISQGAIGIQCREDDEQTIKYIMALNHPETKICVDCERAFLSALDGNCRTPIAGQANIVDGVLQFRGLIAAEDGTEIHRTEASGSPEDAVKIGTDAG 348
                  68****************99987766222267789***********************************************************************************************************************************************************************************************************************************************************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1588.13
//
Query:       MMETSP1174-20130828|30833_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.3   0.0      0.071    9.7   0.0    1.6  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ


Domain annotation for each model (and alignments):
>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   1.7e-05     0.071       5      38 ..      24      57 ..      21      61 .. 0.93
   2 ?   -1.9   0.0     0.056   2.3e+02     103     121 ..     152     170 ..     141     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.7e-05
    TIGR02485  5 lviGgGlaglCaaiearraGasvllleaaPrdlr 38
                  ++GgG+++lC a  a  aG +v +l   P+d+ 
  MMETSP1174-20130828|30833_1 24 TIVGGGNSTLCFAPLACLAGHTVAILTRRPQDWS 57
                 689****************************995 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.056
    TIGR02485 103 GvhlqPaaaGtlpysrrta 121
                  G +l P+ +Gtl+y ++ +
  MMETSP1174-20130828|30833_1 152 GTQLIPWCCGTLEYGKTGI 170
                  88999*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1428.19
//
Query:       MMETSP1174-20130828|30840_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 241.22
//
Query:       MMETSP1174-20130828|30839_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-99  331.0   0.0      2e-99  330.7   0.0    1.1  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.3e-56  190.3   0.0    4.8e-56  188.4   0.0    1.7  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    4.8e-35  118.9   0.0    1.2e-34  117.5   0.0    1.6  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.3e-28   97.9   0.0    1.5e-18   64.7   0.0    3.0  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.7e-21   73.0   0.0    2.2e-19   67.8   0.0    2.3  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
      3e-13   47.2   0.2    7.6e-10   36.0   0.0    2.3  2  TIGR00487 IF-2: translation initiation factor IF-2
    9.3e-13   45.2   0.0    1.1e-05   21.8   0.0    2.4  2  TIGR01393 lepA: GTP-binding protein LepA
    8.6e-12   41.9   0.0      2e-11   40.7   0.0    1.5  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    9.8e-12   42.8   0.0    3.3e-11   41.1   0.0    1.9  1  TIGR00231 small_GTP: small GTP-binding protein domain
    9.6e-07   25.1   0.1    1.3e-06   24.7   0.1    1.1  1  TIGR00484 EF-G: translation elongation factor G
    6.6e-05   19.3   0.0    9.3e-05   18.8   0.0    1.1  1  TIGR00503 prfC: peptide chain release factor 3
     0.0012   15.7   0.0       0.38    7.5   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0037   13.6   0.7      0.027   10.7   0.1    2.5  2  TIGR00491 aIF-2: translation initiation factor aIF-2
     0.0058   12.6   0.3       0.17    7.8   0.1    2.2  2  TIGR00490 aEF-2: translation elongation factor aEF-2


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.7   0.0  6.9e-102     2e-99       4     422 ..     164     606 ..     161     608 .] 0.95

  Alignments for each domain:
  == domain 1    score: 330.7 bits;  conditional E-value: 6.9e-102
    TIGR00483   4 ekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele....vqpqtrehvllartlgikqlivainkmd..svnydeekfeelkkevsellkkvgykpd.evefipvsaykgdnvvk..ksenapwyk................gktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadnppkvakeftaqivv...lqhpgaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvidv 422
                   +ehln++fighvd+gkstl g++ly + ++d+r++ek+++ea+++ + s+  a+++d  +eer +g t++v ++++ td  + ti+dapgh+ ++ nmi+ga+qad+ +lv+++ ++e+e      +qtreh++la+tlg+k liv +nkmd  +v++ +++f+e++ ++  +lk  g+k++ ev+f+p+sa++gdn++     e  pw+                    l+  ld+l  p++    plr+p+ d y     g+v +g++e g + +g+k+++ p+g  ++v  +      ++qa+pgdni +   +++ + + +g v   ++  p+++  f+ q+ +   l+  +  t+gy  +l+ ht +       ll  +dp+t kv++  p+f k g +    l+ ++ +v+  + e p+lgrf++rd g+++a+g+v+++
  MMETSP1174-20130828|30839_1 164 MREHLNIVFIGHVDAGKSTLSGNILYLTDHVDKRTIEKYEREAKQRNRESWFLAFIMDTNEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKNEFEsgfeRGGQTREHAMLAKTLGVKYLIVVVNKMDdpTVKWAKSRFDEIVSKLKPFLKSCGFKVKkEVKFMPISALNGDNILApvSPEACPWWGplhaptkmsentvnttDGELMTCLDNLAMPDRDPTAPLRVPVLDRYYD--RGAVILGKIEVGSISRGDKIMLMPTGTVTKVDQLYTNDVPVKQAMPGDNISIRC-SLNIDSVCKGFVLCAPESAPRAVTRFSCQLALvdlLETRSLFTAGYDCMLHIHTCETEVMVGRLLTAIDPKT-KVEKRFPRFAKVGTTITCTLEVAQSIVVAPFAEQPQLGRFTLRDEGKSIAIGMVLKL 606
                  689*****************************************************************************************************************99998777789*************************9667*************************8538**************973245899***9*************99866799***********************9975..5789**********************************************9876.688999*********************99764222788899*****************************98.89999*************************************************976 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   1.6e-58   4.8e-56       2     405 ..     169     602 ..     168     603 .. 0.85

  Alignments for each domain:
  == domain 1    score: 188.4 bits;  conditional E-value: 1.6e-58
    TIGR02034   2 rfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvle.......qtrrhsiiasllGikhvvlavnkid..lvdydeevfeeikkdylalaeklgv...sdvtviPlsalkGdnvv..eksesmpWy...eGpt.............llevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfdgelekaeaGeavtlvledeid.isrGdllaaadeapevadqfaael..vwlad.e.allpGksyklklgtkkvrasvaeikhkvdvntlekeaakele.lneiglvklsldeeialdayeenrttGafilidrlsnatvgaGl 405
                   ++  G vd Gkstl G +l+ t ++ +  +++ er++k+++ e     la+++d  + er +g t++v   +++td +++ + d+PGh+ y  nm+ ga+ ad+ +l++ ark   e       qtr h+++a  lG+k++++ vnk+d   v++ ++ f+ei ++ + + ++ g+   ++v+++P+sal+Gdn+    + e+ pW+   + pt             l+ +l+++++ ++  + +lr+pv  + r         G i  Gs++ Gd+++++p g+ ++v ++ t d  +++a+ G+ + ++ + +id + +G +l a ++ap+++++f+ +l  v l + +  +++G   +l++ t ++++ v  +  ++d +t  +++  +   +    +++l+++++i++ +++e+ ++G f l d+   + ++ G+
  MMETSP1174-20130828|30839_1 169 NIVFIGHVDAGKSTLSGNILYLTDHVDKRTIEKYEREAKQRNRES--WFLAFIMDTNEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKNEFEsgferggQTREHAMLAKTLGVKYLIVVVNKMDdpTVKWAKSRFDEIVSKLKPFLKSCGFkvkKEVKFMPISALNGDNILapVSPEACPWWgplHAPTkmsentvnttdgeLMTCLDNLAMPDRDPTAPLRVPV--LDRYYDRGAVILGKIEVGSISRGDKIMLMPTGTVTKVDQLYTNDVPVKQAMPGDNISIRCSLNIDsVCKGFVLCAPESAPRAVTRFSCQLalVDLLEtRsLFTAGYDCMLHIHTCETEVMVGRLLTAIDPKTKVEKRFPRFAkVGTTITCTLEVAQSIVVAPFAEQPQLGRFTLRDEG--KSIAIGM 602
                  67789********************************99988766..899***************************************************************954433333366*************************6669*****************99996522268**************833456899**8444334322333333334448899999999999999****999..455555455578****************************************************9789******************988622444331414689*************************99987777666543888899*************************8864..4555555 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   4.1e-37   1.2e-34      10     393 ..     165     607 ..     159     608 .] 0.77

  Alignments for each domain:
  == domain 1    score: 117.5 bits;  conditional E-value: 4.1e-37
    TIGR00485  10 kphvnvgtighvdhgkttltaaittvlakegkaaakkyde...............idkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpm.......pqtrehillarqvgvpklvvflnkvdlvdde...ellelvelevrellseydfpg.ddvpivrgsalkale......................gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgsi.kphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpeg.......vemvlp.....gdnvkltvelispval....e..eglrfaireggrtvgagvvskil 393
                  ++h+n+  ighvd gk+tl+  i     +  k +++ky+                +d+  ee+a+g t++  +    t+ + y+ +d pgh  yv nmi+gaaq d +ilv+sa  + +        qtreh +la+ +gv +l+v +nk+d  + +      + +  +++ +l++ +f+  ++v  +  sal+  +                      ++++ +    elm  +d+ +  p+r+   p+ +++ d +    rg+v+ g++e g +  g+++ ++     + t v  +      +++a+ gdn+ +    ++ + + +g vl+ p+s  ++ ++f++++ +++  e    + f +gy   +++ t++   ++    +       ve  +p     g  ++ t+e+ +++ +    e  +  rf++r+ g+++  g+v k+l
  MMETSP1174-20130828|30839_1 165 REHLNIVFIGHVDAGKSTLSGNILYLTDHVDKRTIEKYEReakqrnreswflafiMDTNEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKNEFesgfergGQTREHAMLAKTLGVKYLIVVVNKMDDPTVKwakSRFDEIVSKLKPFLKSCGFKVkKEVKFMPISALNGDNilapvspeacpwwgplhaptkmSENTVNTTDGELMTCLDN-LAMPDRDPTAPLRVPVLDRY--YDRGAVILGKIEVGSISRGDKIMLMPTG--TVTKVDQLYTNDVPVKQAMPGDNISIR-CSLNIDSVCKGFVLCAPESApRAVTRFSCQLALVDLLET--RSLFTAGYDCMLHIHTCETEVMVGRLLTaidpktkVEKRFPrfakvGTTITCTLEVAQSIVVapfaEqpQLGRFTLRDEGKSIAIGMVLKLL 607
                  78******************9997666555555555554222222333455555569999******************************************************8765522223336************************9644331124445555689999******962578888889998877888999***********9888777777778889***9996.789***************87..68*******************9887543..233344444445568999******975.57999************99746889*****999887775..578999****9999997644333222111224445665555444448889888888777655222231234599999999999999998876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.036        11       2      18 ..     169     185 ..     168     209 .. 0.84
   2 !   64.7   0.0     5e-21   1.5e-18      29     154 ..     224     362 ..     216     364 .. 0.86
   3 !   27.0   0.0   1.3e-09   3.8e-07     175     275 ..     411     507 ..     391     524 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.036
    TIGR00475   2 iiataGHvDHGKttLlk 18 
                  +i+  GHvD GK tL  
  MMETSP1174-20130828|30839_1 169 NIVFIGHVDAGKSTLSG 185
                  7999**********965 PP

  == domain 2    score: 64.7 bits;  conditional E-value: 5e-21
    TIGR00475  29 PeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvda.....deGvk..aqtkEHLavlkllgikelivvltKaD....rvdeeevkevEeelkeileeeefl..knakivkvsAktGqGi 154
                   eE+ +G t+++G a l  + k+ +++D+PGH+ ++ n+++g + +d  +Lv+ a     + G     qt+EH +++k lg+k livv++K+D    +  + + +e+ ++lk +l++ +f   k+ k++ +sA +G  i
  MMETSP1174-20130828|30839_1 224 EEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISArknefESGFErgGQTREHAMLAKTLGVKYLIVVVNKMDdptvKWAKSRFDEIVSKLKPFLKSCGFKvkKEVKFMPISALNGDNI 362
                  58889************************************************984322234665336*************************554445678899************987433899*******999866 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 1.3e-09
    TIGR00475 175 kplrlai.DraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkrvvvklkaev 275
                   plr+++ Dr +     G v+ G +  G +  gD+++l p++   +v +l + +++v++a+ G+ i++    ++ +++ +G++   pe+   r v ++  ++
  MMETSP1174-20130828|30839_1 411 APLRVPVlDRYY---DRGAVILGKIEVGSISRGDKIMLMPTGTVTKVDQLYTNDVPVKQAMPGDNISIRCS-LNIDSVCKGFVLCAPESA-PRAVTRFSCQL 507
                  566666524444...3589***********************************************98875.6666899**766666654.34444444443 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   7.6e-22   2.2e-19       4     186 ..     166     363 ..     163     368 .. 0.75
   2 ?    2.7   0.0     0.042        12     229     295 ..     425     479 ..     420     515 .. 0.67

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 7.6e-22
    TIGR03680   4 pevniglvGhvDhGkttlvka...ltGvwtdthseelkrgisi..klGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPq......pqtkehlvaleiigiknivivqnkidlvskekalenyeei....kefvkg...tvaenapiiPvsalkkvnid 186
                   ++ni ++GhvD Gk+tl      lt    ++  e   r      +  +  a i++ +e e+ +  t+e         +   ++ +++DaPGh + +  m+sGaa  d  +Lvi+a ++  +       qt+eh +  + +g+k +++v nk+d  + + a  +++ei    k f+k+   +v ++ + +P+sal+  ni 
  MMETSP1174-20130828|30839_1 166 EHLNIVFIGHVDAGKSTLSGNilyLTDHVDKRTIEKYEREAKQrnRESWFLAFIMDTNEEERAKGKTVEVGRA--HL-ATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKNEFEsgfergGQTREHAMLAKTLGVKYLIVVVNKMDDPTVKWAKSRFDEIvsklKPFLKScgfKVKKEVKFMPISALNGDNIL 363
                  578**************97652226766666666766666554115567777777777777777766665333..33.345567799*****************************7654321222236*************************999999999999883333567776333568999********999986 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.042
    TIGR03680 229 GGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavgtkL 295
                  G vi G +  G++  gd+i + P   v            t+v +l +++  v++a Pg  +++  +L
  MMETSP1174-20130828|30839_1 425 GAVILGKIEVGSISRGDKIMLMPTGTV------------TKVDQLYTNDVPVKQAMPGDNISIRCSL 479
                  677777777777777777777775554............4566666666666666666666666555 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00041      0.12      56     106 ..     139     186 ..     117     196 .. 0.77
   2 !   36.0   0.0   2.6e-12   7.6e-10     115     238 ..     226     362 ..     214     366 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00041
    TIGR00487  56 elgvkvevrvtleeeeveeeeedsedkkeerpPvvtimGhvDhGktsLLds 106
                    + k  +++++ee ++ee+ ed+  + +e+  +v  +GhvD Gk +L  +
  MMETSP1174-20130828|30839_1 139 PPAAKEPEVEAAEEVVIEEVAEDA--DMREHLNIVF-IGHVDAGKSTLSGN 186
                  55567778889999999***9994..4666666765.6********99665 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 2.6e-12
    TIGR00487 115 geaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaa.....dDGvkp..qtieaiehakaanvP.iivainkiDkpean.....pDrvkqelsey.glvpeewGGetifvpvsalkgkgi 238
                  + a G t ++G  ++ ++ k   t lD+PGh+++      Ga  +D+ +lv++a     + G ++  qt e    ak+ +v  +iv++nk+D p+++      D +  +l+ +      +   e++f+p+sal+g++i
  MMETSP1174-20130828|30839_1 226 ERAKGKTVEVGRAHLATDAK-RYTILDAPGHKSYVPNMISGAAQADVGILVISArknefESGFERggQTREHAMLAKTLGVKyLIVVVNKMDDPTVKwaksrFDEIVSKLKPFlKSCGFKVKKEVKFMPISALNGDNI 362
                  45779999*******97777.79***********999999**************43333357765569***9999***9996499*********87522222577777777652344556678899*********998 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.9e-08   1.1e-05       5     139 ..     169     322 ..     165     335 .. 0.67
   2 !   20.7   0.0   8.1e-08   2.4e-05     172     240 ..     395     461 ..     380     474 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.9e-08
    TIGR01393   5 nfsiiahidhGkstladrllektkavserelke......q..........lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaq.....Gvea..qtlanvylalekdle.iiPvinkidlPsadv 139
                  n+  i h+d Gkstl+  +l  t+ v++r +++      q          ++d+ + er +G t+ +   +l    +d ++y+  ++d+PGh  +  ++    a ++  +l++ a +     G e   qt  ++ la    ++ +i v+nk+d P+ + 
  MMETSP1174-20130828|30839_1 169 NIVFIGHVDAGKSTLSGNILYLTDHVDKRTIEKyereakQrnreswflafIMDTNEEERAKGKTVEVGRAHLA---TDAKRYT--ILDAPGHKSYVPNMISGAAQADVGILVISARKnefesGFERggQTREHAMLAKTLGVKyLIVVVNKMDDPTVKW 322
                  8999*******************99998765321111111222333333346677777777777776666554...5777786..69********9998888888888899998864333337775226665555555544443688999*99998765 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 8.1e-08
    TIGR01393 172 leaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvlt 240
                  l + +++++ P  d++apl+  ++d +yd  rG+v++ ++  G+i++gdki+l+ tg+  +v+++ +  
  MMETSP1174-20130828|30839_1 395 LMTCLDNLAMPDRDPTAPLRVPVLDRYYD--RGAVILGKIEVGSISRGDKIMLMPTGTVTKVDQLYTND 461
                  556778999********************..7***************************9999987655 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   6.7e-14     2e-11       3     241 ..     169     451 ..     167     482 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 6.7e-14
    TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlre........keeveer.......vmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGpl.......pqtr..fvlkkalelglkpivvinkiDrp.....darpeevvdevfdLfvelgad.deqldfpvvyasakeGvasle...................eedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgk 241
                  ni  i hvD Gk tl  ++L  ++ +++        + + ++r       +mD+n+ er +G t+    + ++ +  +  i+D+PGh  +  ++       d  +l++ a +  +        qtr   +l k+l +++  ivv+nk+D p     ++r +e+v++   ++ ++g + ++++ f  + a   +G   l                    +e++ ++ +  + + l++++ P  d+ +pl++ v    yd   G +++g++e G++ +g++++l+ +   
  MMETSP1174-20130828|30839_1 169 NIVFIGHVDAGKSTLSGNILYLTDHVDKrtiekyerEAKQRNReswflafIMDTNEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKNEFesgfergGQTRehAMLAKTLGVKY-LIVVVNKMDDPtvkwaKSRFDEIVSKLKPFLKSCGFKvKKEVKFMPISA--LNGDNILApvspeacpwwgplhaptkmSENTVNTTDGELMTCLDNLAMPDRDPTAPLRVPVLDRYYD--RGAVILGKIEVGSISRGDKIMLMPTGTV 451
                  999************999987665443311111111112222244555558*********************************************************9976544222223358873368889998876.6899*****9822222467888999998899999876456677776655..4444444444589999***999986654445555666778999*************99888777776..5********************9976543 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.1e-13   3.3e-11       4     156 ..     168     363 ..     165     367 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 1.1e-13
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglek.......qtkeiiheakkkgvp.iilvvnKiDlkd.............dlktkvkslfaklnaep.iielsaetgknid 156
                   +iv++Ghvd+GKstL  ++l+ +   + +k  + ++y+ e  ++++ +                                ++ ++lD +G++ +       v++  + +  +d+ ilv+++++++ +       qt+e +  ak+ gv+ +i+vvnK+D  +             +lk+  ks   k ++e  ++++sa +g+ni+
  MMETSP1174-20130828|30839_1 168 LNIVFIGHVDAGKSTLSGNILYLT--DHVDKR-TIEKYERE-AKQRNREswflafimdtneeerakgktvevgrahlatdaKRYTILDAPGHKSY-------VPNMISGAAQADVGILVISARKNEFEsgferggQTREHAMLAKTLGVKyLIVVVNKMDDPTvkwaksrfdeivsKLKPFLKSCGFKVKKEVkFMPISALNGDNIL 363
                  69******************9977..333333.33444444.344443446777777777777777777**************************.......*****************9999887432333333999999999999999457899******999999999999999999999998899998889999999999997 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   4.3e-09   1.3e-06       3     155 ..     160     334 ..     158     357 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 4.3e-09
    TIGR00484   3 rtvdleklrniGisahidaGktttterilfytgkihk..ig....evh..dGaa.....tmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldav.....aGvep..qsetvwrqakkyevPr.ivfvnkmdkiGanflkvv.eqlksrl 155
                   + d+++  ni    h+daGk+t++  il+ t+++ k  i+    e +  + ++      md  e e+ +G t+    ++      r  ++d+PGh  +  ++       d  ++v+ a      +G e   q+      ak+ +v   iv vnkmd    +  k++ +++ s+l
  MMETSP1174-20130828|30839_1 160 EDADMREHLNIVFIGHVDAGKSTLSGNILYLTDHVDKrtIEkyerEAKqrNRESwflafIMDTNEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARknefeSGFERggQTREHAMLAKTLGVKYlIVVVNKMDDPTVKWAKSRfDEIVSKL 334
                  567889999***********************9877632332212333332222233337***************************************9999999999999999998852223357775225555566788999986256789999877776665425555555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.2e-07   9.3e-05      12     160 ..     168     334 ..     155     359 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.2e-07
    TIGR00503  12 rtfaiishpdaGkttltekvllyGnaiqeaGavka.rgsqrsaksdw.....m...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaak.....Gvee..rtrkl.levtrlrdlpiltflnkldrdirdp.lelldevenel 160
                   ++  i h daGk+tl+  +l   + +++    k  r ++++ +  w     m   e e+ +G ++      +    k   +ld+pGh+ +  +     + +d  ++vi a k     G e   +tr   +    l    ++  +nk+d ++ +     +de+  +l
  MMETSP1174-20130828|30839_1 168 LNIVFIGHVDAGKSTLSGNILYLTDHVDKRTIEKYeREAKQRNRESWflafiMdtnEEERAKGKTVEVGRAHLATDAKRYTILDAPGHKSYVPNMISGAAQADVGILVISARKnefesGFERggQTREHaMLAKTLGVKYLIVVVNKMDDPTVKWaKSRFDEIVSKL 334
                  3556699*******************99988877514555666666733332222234666777777777888899999*******************************998444444553335554313334455556777788888776543034566666655 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0013      0.38     165     196 ..     158     188 ..     136     199 .. 0.72
   2 !    5.9   0.0    0.0039       1.1     287     335 ..     306     362 ..     255     367 .. 0.69

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0013
    TIGR03594 165 eeeeeeeeeepikiaiiGrpNvGKStLvNall 196
                    e+++  +e+++i +iG   +GKStL  ++l
  MMETSP1174-20130828|30839_1 158 VAEDAD-MREHLNIVFIGHVDAGKSTLSGNIL 188
                  222222.34579***************86665 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0039
    TIGR03594 287 kalvivvNKwDlv...kdekeleelkkeleeklkfl.....kfapivfiSAltgkgv 335
                  k l++vvNK+D       +++++e+ ++l+  lk +     k ++++ iSAl+g ++
  MMETSP1174-20130828|30839_1 306 KYLIVVVNKMDDPtvkWAKSRFDEIVSKLKPFLKSCgfkvkKEVKFMPISALNGDNI 362
                  6689******97644556778888888888655544222237799999999999887 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   9.4e-05     0.027      70     133 ..     246     317 ..     163     335 .. 0.65
   2 ?   -3.9   0.0       2.5   7.2e+02     489     530 ..     434     475 ..     426     479 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.4e-05
    TIGR00491  70 GllvidtPGheaftslrkrGGaladiailvv.....dineGfkp..qtveavnilrqlktPf.vvaankidr 133
                     ++d+PGh+ +      G a ad+ ilv+     +   Gf++  qt e   + ++l + + +v  nk+d 
  MMETSP1174-20130828|30839_1 246 RYTILDAPGHKSYVPNMISGAAQADVGILVIsarknEFESGFERggQTREHAMLAKTLGVKYlIVVVNKMDD 317
                  45689*************************933222345699855599999999999988763788999984 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.5
    TIGR00491 489 aGvlrvgaplikedGekvGevreikdrgenvkeakagkavsi 530
                   G + +g +++     +v +v ++  ++  vk+a  g+++si
  MMETSP1174-20130828|30839_1 434 VGSISRGDKIMLMPTGTVTKVDQLYTNDVPVKQAMPGDNISI 475
                  577777777777777788888888888888888888888887 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00057      0.17      20     118 ..     168     277 ..     151     285 .. 0.62
   2 ?    2.6   0.0     0.021         6     279     337 ..     402     458 ..     379     500 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00057
    TIGR00490  20 rnigivahidhgkttlsdnllagagmise......elageql.........fldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvc 118
                   ni  + h+d gk+tls n+l  +  + +      e   +q+         ++d +e+e+++g t++     +    + + y   ++d+pgh  +  ++       d  i+v++
  MMETSP1174-20130828|30839_1 168 LNIVFIGHVDAGKSTLSGNILYLTDHVDKrtiekyEREAKQRnreswflafIMDTNEEERAKGKTVEVGRAHLA--TDAKRYT--ILDAPGHKSYVPNMISGAAQADVGILVIS 277
                  488899**************987766654212112333344323333222235667888888888876665554..3456665..47999998887776655555555555555 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.021
    TIGR00490 279 kamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvg 337
                   am + dp  pl v + +   d+  g+v  g++  g+i +g++++l+ + + ++++q+ 
  MMETSP1174-20130828|30839_1 402 LAMPDRDPTAPLRVPVLDRYYDR--GAVILGKIEVGSISRGDKIMLMPTGTVTKVDQLY 458
                  589999*******9999998886..899*******************999999998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.74u 0.18s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 1573.52
//
Query:       MMETSP1174-20130828|30843_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1198.90
//
Query:       MMETSP1174-20130828|30851_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 350.81
//
Query:       MMETSP1174-20130828|30848_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-30  103.9   0.1    1.9e-30  103.6   0.1    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    7.4e-05   19.8   0.4     0.0002   18.4   0.2    1.6  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00064   16.7   0.0     0.0032   14.3   0.0    1.8  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0028   14.7   0.5       0.24    8.3   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.016   11.9   0.1      0.059   10.1   0.1    1.8  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.022   11.6   0.3        1.1    6.1   0.0    2.1  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1   2.8e-33   1.9e-30       3     160 ..      53     209 ..      51     213 .. 0.96

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 2.8e-33
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaepiielsaetgknidklfk 160
                   +k++++G+++vGKs+Ll ++++ + + ++   +++ d+  ++ie+dG ++k++++DTaGqe+f+ i+ +y+r + ++l v+d++++  +++ ++ ++ ++i+++a+ ++v  ilv+nK D      ++ +++++ +a+ ++ p+ e+sa++   ++++f+
  MMETSP1174-20130828|30848_1  53 LVKLLLIGDSAVGKSSLLLRFSDAS-FSSSFITTIGIDFQIKSIEIDGLKVKLQIWDTAGQERFKTITTAYYRGAMGILLVYDVSSR-ATFDHVK-DWIRQIEQHAE-ENVNKILVGNKSDVPAemrQVTYEEGKALAAEYNLPFYETSAKADLEVTEAFE 209
                  689**********************.999999*******************************************************.9999999.***********.*******************************************9988888886 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   2.9e-07    0.0002     210     333 ..      54     175 ..      42     203 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.9e-07
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGt.tRDvvEedleleGilvk..llDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.....eliitlkkkkkdlllvlNKiDLaelei 333
                  +kl ++G+  vGKSSLl  ++  d +  s++  t   D   +++e++G +vk  + DtAG    + ++       ++   + a  +l+v D+s+  t d+     ++i++   ++ + +lv NK D+  +  
  MMETSP1174-20130828|30848_1  54 VKLLLIGDSAVGKSSLLLRFS--DASFSSSFITTiGIDFQIKSIEIDGLKVKlqIWDTAGQERFK-TI-------TTAYYRGAMGILLVYDVSSRATFDHvkdwiRQIEQHAEENVNKILVGNKSDVPAEMR 175
                  799*************97776..566777765551579999*******98752279****53332.22.......344556666788888888777654332124567777777788889999998874433 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.7e-06    0.0032     173     343 ..      51     212 ..      21     222 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.7e-06
    TIGR03594 173 eepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDs..idievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategis.....eqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaik 343
                  +  +k+ +iG   vGKS+L+ ++ +   +  s i  +  D    +ie++  + k+++ DTAG  r k ++++             + a  +llv D+++  +     +   +i ++ +ee+   ++v NK D+    +e+++++ e  + l+     p++ +SA+ + +v++ +e i+
  MMETSP1174-20130828|30848_1  51 NYLVKLLLIGDSAVGKSSLLLRFSDASFS-SSFITTIGIDFqiKSIEIDGLKVKLQIWDTAGQERFKTITTAY-----------YRGAMGILLVYDVSSRATfdhvkDWIRQI-EQHAEENVNKILVGNKSDVP---AEMRQVTYEEGKALAAEYNLPFYETSAKADLEVTEAFEGIT 212
                  456899999**********9998876633.3334444445400445555556678889999999988886322...........22333345555554333210000222233.33445566778999999988...77777777777888888889999999999999998888776 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00035      0.24     156     214 ..      54     111 ..      42     121 .. 0.66
   2 !    5.3   0.0    0.0029         2      55     103 ..     116     170 ..     109     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00035
    TIGR03597 156 kdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieip.ldkesvllDtpG 214
                   + +++G + VGKSsl+ +  + +   ++ itt  + +  ++ iei+ l+ + ++ Dt+G
  MMETSP1174-20130828|30848_1  54 VKLLLIGDSAVGKSSLLLRFSDASFS-SSFITTIGI-DFQIKSIEIDgLKVKLQIWDTAG 111
                  57899***********9887755543.344555332.22344444432345667888887 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0029
    TIGR03597  55 lnllnslsekkalvvavvD.....ifdlegslikelkrfvken.kvllvvNKidl 103
                  + + + + +  + ++ v D      fd  + +i+++++ ++en + +lv+NK d+
  MMETSP1174-20130828|30848_1 116 KTITTAYYRGAMGILLVYDvssraTFDHVKDWIRQIEQHAEENvNKILVGNKSDV 170
                  5555555555666777777555556999999*****9998876478*******97 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   8.7e-05     0.059     182     325 ..      46     182 ..      40     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8.7e-05
    TIGR03156 182 kkrkksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFka.TLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleek 325
                  ++r  + ++++ l+G    GKs+ll ++ +a+  +       +d +++ ++++  + ++ + DT G          e Fk+ T    + a  +l v D+s++++ +++++  + +e+   e+++++lv Nk d  +e +  + ee 
  MMETSP1174-20130828|30848_1  46 SQRGYNYLVKLLLIGDSAVGKSSLLLRFSDASFSSSFITTIGIDFQIKSIEIDGLKvKLQIWDTAGQ---------ERFKTiTTAYYRGAMGILLVYDVSSRATFDHVKDWIRQIEQHAEENVNKILVGNKSDVPAEMRQVTYEEG 182
                  5667777778888888888888888888887777666666667888888888776437778888883.........3344323333556777999************999999999999999***********9886555444443 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0077       5.3     157     181 ..      53      77 ..      32      84 .. 0.86
   2 ?    6.1   0.0    0.0016       1.1     252     325 ..     139     212 ..     125     216 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0077
    TIGR02729 157 ladvglvGlpnaGkStllsavsaak 181
                  l    l+G + +GkS+ll ++s+a 
  MMETSP1174-20130828|30848_1  53 LVKLLLIGDSAVGKSSLLLRFSDAS 77 
                  566679**************99985 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0016
    TIGR02729 252 dpvedleviekeLkkyseeLaekpelvvlnkidllee..eeleellkelkeelekkvlaisaltkegleellkkll 325
                   ++++++   ++++++ e  ++ ++++v nk d+++e  + + e  k+l++e++ +++++sa ++ +++e  + ++
  MMETSP1174-20130828|30848_1 139 ATFDHVKDWIRQIEQHAE--ENVNKILVGNKSDVPAEmrQVTYEEGKALAAEYNLPFYETSAKADLEVTEAFEGIT 212
                  445555555566666666..456789********9986344456677888999*********99999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.43
# Mc/sec: 761.24
//
Query:       MMETSP1174-20130828|30855_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|30853_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|30852_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 1708.91
//
Query:       MMETSP1174-20130828|30857_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|30858_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 181.10
//
Query:       MMETSP1174-20130828|30861_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 204.45
//
Query:       MMETSP1174-20130828|30862_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1004.06
//
Query:       MMETSP1174-20130828|30863_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   54.9   0.0    1.5e-15   54.6   0.0    1.0  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    2.7e-05   22.5   0.0    6.1e-05   21.4   0.0    1.6  1  TIGR01753 flav_short: flavodoxin
    0.00049   17.5   0.0     0.0011   16.5   0.0    1.7  1  TIGR01752 flav_long: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.1e-18   1.5e-15      60     216 ..       3     175 ..       1     194 [. 0.76

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 1.1e-18
    TIGR01931  60 evtilyasqtGnarrlakklaeklea...aglkvklv...sakdykakelkke.kllllvistqGeGepPeeaislhkfla..skkaPk....lenlkysvlgLGDssYeffCqagkdfDkrleeLGgkrllervdaDvdy....eaaaaeWseevlkalkekakksasavsls 216
                  +v ++y+s+tGn+rr ++kl ++ e    +++kv      + +  ++  l ++   l+l++s  G+G+pP+   ++   l   +kk  +    le +++ vlg G + Ye+f +  +  D+ le+ G+ r l+r + D  +    +++ ++W +ev   l+e+++ sa+++s+ 
  MMETSP1174-20130828|30863_1   3 RVCVIYGSETGNTRRKTNKLVKEWEGrsgRNFKVDAPvsgDEASGRFDTLSQDyDVLILITSSFGDGDPPDGYHKFLAALYegAKKE-EgekpLEGVQHHVLGFGSTMYETFQNCPRLTDQLLEANGSRRFLKRKEMDEMMeeteDENLSNWDKEVFGMLNETTRDSAKQPSVC 175
                  799******************999862225677765411123344677887762578999***********7555444332222332.1223499******************************************96551122457789***********998888877765 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.4e-08   6.1e-05       1     139 [.       4     157 ..       4     158 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 4.4e-08
    TIGR01753   1 ilivYaSmtGnteeiAeiieeglk.eagaevdllevadvdk.....edlle.yDavllGcstwgdedleeddflpfv....eeleeid....legkkvalfGsgdtay.efceavdkleerlkeaGakiiaeglkveedpeeeeldkleefakkl 139
                  + ++Y+S tGnt    +++ ++ +   g + ++    + d+     ++l + yD+++l +s+ gd+d + d    f+    e  ++ +    leg +  ++G g t y +f +  +   + l++ G   + +  +++e  ee e ++l ++ k++
  MMETSP1174-20130828|30863_1   4 VCVIYGSETGNTRRKTNKLVKEWEgRSGRNFKVDAPVSGDEasgrfDTLSQdYDVLILITSSFGDGDPP-DGYHKFLaalyEGAKKEEgekpLEGVQHHVLGFGSTMYeTFQNCPRLTDQLLEANGSRRFLKRKEMDEMMEETEDENLSNWDKEV 157
                  679*********9877776666552445544444433333311111355567***************99.5555554111144443331111455567889999999988999999999999*******************99999999998876 PP

>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.7e-07    0.0011       2      72 ..       4      83 ..       3     130 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.7e-07
    TIGR01752  2 igifygsdtgntekiaekiekelgesavdvvnik........kasaeel.eaydvlilgtptwgaGelqedWeeilskle 72
                 + ++ygs+tgnt++ ++k+ ke    +   ++++        +   ++l ++ydvlil t+ +g+G+ ++ ++++l +l 
  MMETSP1174-20130828|30863_1  4 VCVIYGSETGNTRRKTNKLVKEWEGRSGRNFKVDapvsgdeaSGRFDTLsQDYDVLILITSSFGDGDPPDGYHKFLAALY 83
                 789*********9999988888764444444443111111002223344368*********************9999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.65
# Mc/sec: 462.98
//
Query:       MMETSP1174-20130828|30869_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 221.17
//
Query:       MMETSP1174-20130828|30871_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 538.52
//
Query:       MMETSP1174-20130828|30865_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 1590.82
//
Query:       MMETSP1174-20130828|30864_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    8.3   2.8       0.22    8.5   0.1    1.9  2  TIGR00219 mreC: rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.03   1.2e+02      77     123 ..     150     198 ..     123     204 .. 0.62
   2 ?    8.5   0.1   5.3e-05      0.22      67     112 ..     271     314 ..     266     336 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.03
    TIGR00219  77 klrqellkknaqlelltq..elkqENkrLrelLnsvlssdeykivaevi 123
                  + r+++  k +    + q   l+   + L+++ ++ +++ + +  a ++
  MMETSP1174-20130828|30864_1 150 RERNRMHAKKTRERKKMQmeALQSRIEGLKQEFGHLKQIVDARYTAYIL 198
                  3334444443333333333366667777888888888877777776665 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 5.3e-05
    TIGR00219  67 dlnkleleNkklrqellkknaqlelltqelkqENkrLrelLnsvls 112
                  ++n+++ +  ++r++l    ++  +    +++ENkrLr+ L     
  MMETSP1174-20130828|30864_1 271 ERNRMHAKRTRDRKKLFLEESEQTIAR--MERENKRLRDFLKRHGM 314
                  578899999*******99977766655..59********9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 1399.08
//
Query:       MMETSP1174-20130828|30868_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   35.0   0.1    2.1e-08   31.3   0.0    1.9  2  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    4.5e-07   27.0   0.0    6.5e-07   26.5   0.0    1.2  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
    6.2e-06   23.1   0.0    8.4e-06   22.6   0.0    1.2  1  TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
    1.8e-05   21.8   0.0    7.5e-05   19.7   0.0    1.8  2  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
      0.002   15.2   0.0     0.0031   14.7   0.0    1.2  1  TIGR04009 wcaE: colanic acid biosynthesis glycosyl transferase WcaE
     0.0027   15.0   0.0     0.0042   14.3   0.0    1.3  1  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
  ------ inclusion threshold ------
      0.011   12.4   0.0      0.017   11.8   0.0    1.2  1  TIGR03472 HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI


Domain annotation for each model (and alignments):
>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.6e-11   2.1e-08      74     188 ..      60     181 ..      49     194 .. 0.82
   2 ?    1.7   0.0     0.034        20     233     268 ..     220     254 ..     202     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 3.6e-11
    TIGR03965  74 dsvtvVvPvrdrpaglarllaalealdyprdrlevivVD....DgSedpvetaaar.aaeltvrv..iRhdrsqGpaaaRNaGlraartefvAFlDsDvvprpgWLeallaefsdpgValva 188
                   ++++++P     +++ ++l+ l+      + +evivVD    Dg  ++v++aa+   + lt+r+  + hd++ G  a+  aG++a++++++ Fl  D v+ pg+   l +e+++  V + a
  MMETSP1174-20130828|30868_1  60 GHISIIIPAYKEVDTIGACLQRLNDCISEPNLVEVIVVDagggDGTMEKVREAAEGsLSGLTLRTanLPHDSKGGRGATLIAGVAASKGDIILFLHADTVVLPGFDGLLRSELAKDSVLATA 181
                  579********************755555566*******55555556666665554455566665336799*********************************999999999998887765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.034
    TIGR03965 233 alivrRrallevgGFDeslevgEDvDlvwRlveaGa 268
                  a+++ R+ l++vgG    + + ED +lv +l + Ga
  MMETSP1174-20130828|30868_1 220 AIAMTRQRLDAVGGV-PDVPIMEDFELVQKLRRIGA 254
                  8999***********.99************999885 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09   6.5e-07      42     139 ..      57     161 ..      15     181 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.1e-09
    TIGR03937  42 eevpkvsllvpcynegenveetisallkl.kypn.leviainDGskDdtaeildklakked.....rlrvihleenqGkaaalneglkaakseylvciDgDalld 139
                  +   ++s+++p+y e +++   ++ l++  + pn +evi+++ G  D t e++ + a+ +      r   + +++  G+ a+l +g++a+k ++++ + +D+++ 
  MMETSP1174-20130828|30868_1  57 SGPGHISIIIPAYKEVDTIGACLQRLNDCiSEPNlVEVIVVDAGGGDGTMEKVREAAEGSLsgltlRTANLPHDSKGGRGATLIAGVAASKGDIILFLHADTVVL 161
                  44458********************99752555537******************999865312211444566678889************************985 PP

>> TIGR03111  glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.4e-08   8.4e-06      50     143 ..      61     159 ..      31     177 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.4e-08
    TIGR03111  50 eitiiiPvynsedtlknciesiknssypkklidvilvnnqssddsfk.vfaraqkefpelslryln....sdqGkakalnaaiyksiGkyiinidsdGv 143
                  +i+iiiP y   dt+  c++ ++++  + +l++vi+v+    d + + v   a+ + ++l+lr  n    s+ G+  +l a++  s+G  i+ + +d v
  MMETSP1174-20130828|30868_1  61 HISIIIPAYKEVDTIGACLQRLNDCISEPNLVEVIVVDAGGGDGTMEkVREAAEGSLSGLTLRTANlphdSKGGRGATLIAGVAASKGDIILFLHADTV 159
                  699****************************************9996155566778999***987544448999*****************99988876 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.3e-07   7.5e-05      45     100 ..      61     117 ..      45     162 .. 0.81
   2 ?   -0.6   0.0      0.19   1.1e+02     216     287 ..     221     298 ..     217     305 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.3e-07
    TIGR03469  45 evvavvPardeaevigeaveslleqdY.pGklkvilvDDeseDgtaeiarevaeald 100
                  ++ +++Pa  e+++ig++++ l +    p  ++vi+vD    Dgt e  re+ae   
  MMETSP1174-20130828|30868_1  61 HISIIIPAYKEVDTIGACLQRLNDCISePNLVEVIVVDAGGGDGTMEKVREAAEGSL 117
                  6899******************99765166679******************998544 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.19
    TIGR03469 216 iLirreaLekiGGiaairealiDDCtLaaavkkk....kgkiwLglaeetvslrpyesl....eeiwkmvartaytqLry 287
                  i + r+ L+ +GG+  +   +++D  L +++++     +g+i+   a+   s r++++     +++ + v  tay+   +
  MMETSP1174-20130828|30868_1 221 IAMTRQRLDAVGGVPDV--PIMEDFELVQKLRRIgaagSGRIKTLDAKVLCSGRRWQEKgvwrTNLLNQVIMTAYVYFGF 298
                  67889999999999887..4778888888887764444566666556666666666553111123334455666665555 PP

>> TIGR04009  wcaE: colanic acid biosynthesis glycosyl transferase WcaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.3e-06    0.0031       3      94 ..      62     159 ..      61     181 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.3e-06
    TIGR04009   3 lsvitvafrnyegvvktwrslrnlardpelsfewivvdggsndgtaeflek.lngef...nlrfvs..ekdk.giydamnkgialaqgryalflnsgdv 94 
                  +s+i  a+++ + +    + l++   +p+l  e ivvd g  dgt e +++  +g +    lr        k g   ++  g+a ++g   lfl +  v
  MMETSP1174-20130828|30868_1  62 ISIIIPAYKEVDTIGACLQRLNDCISEPNL-VEVIVVDAGGGDGTMEKVREaAEGSLsglTLRTANlpHDSKgGRGATLIAGVAASKGDIILFLHADTV 159
                  799**************************9.6*************987754156654211456543113333134445677888888888888877665 PP

>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.1e-06    0.0042       2      85 ..      62     160 ..      61     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 7.1e-06
    TIGR04182   2 vcvliPtlneaatigevieefkel....GyedilvidGnstddtqeiakea..G.........arvvaqsGkGkGqavreavelidkpyvllldgdgty 85 
                  ++++iP+++e +tig  ++++++      + +++v+d +  d+t e+ +ea  G         a++ + s  G+G+ ++ +v+  + +++l+l +d+  
  MMETSP1174-20130828|30868_1  62 ISIIIPAYKEVDTIGACLQRLNDCisepNLVEVIVVDAGGGDGTMEKVREAaeGslsgltlrtANLPHDSKGGRGATLIAGVAASKGDIILFLHADTVV 160
                  689*************9999875422227899************9887764222222232222555566777888888888888888888888888765 PP

>> TIGR03472  HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.9e-05     0.017     203     240 ..     219     254 ..     200     263 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.9e-05
    TIGR03472 203 atiAlrRetLeaiGGlaaladelAdDyaLgelvralGl 240
                  ++iA++R+ L+a+GG++ +   + +D++L ++ r++G+
  MMETSP1174-20130828|30868_1 219 QAIAMTRQRLDAVGGVPDV--PIMEDFELVQKLRRIGA 254
                  79***************98..589************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1218.07
//
Query:       MMETSP1174-20130828|30873_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 945.92
//
Query:       MMETSP1174-20130828|30874_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 617.71
//
Query:       MMETSP1174-20130828|30872_1  [L=936]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-08   30.8   0.0    5.4e-08   29.8   0.0    1.5  1  TIGR03253 oxalate_frc: formyl-CoA transferase


Domain annotation for each model (and alignments):
>> TIGR03253  oxalate_frc: formyl-CoA transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.3e-11   5.4e-08       1     189 [.     682     860 ..     682     882 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.3e-11
    TIGR03253   1 tkaleGikvldfthvqsGPsctqllawlGadvikierpgvGditrgqlrdipdvdslyftmlnankrsitldikapeGkevleelikkadvlvenfkPGaldrmGftwekiqelnPrlilasikGfdegsa.yenvka.yenvaqaaGGaasttGfedG....vPlvsaaalGdsntGlhlvigilaallqrekt 189
                  tk+l+ + vldf+++    ++ + l   Ga vi++   g+     g+ r  ++      ++ na k  ++ldi ++ Gk  + +l+  advl++     +l++ Gf  e++    P+li+  +  fd +++ ++++k   e++a+   G    tG  d       l+s      + tG+  + +i++al qr+ +
  MMETSP1174-20130828|30872_1 682 TKPLSDVLVLDFSQLAGSHTVGRSLVDHGATVIQVIFDGT----AGEKRSEEE------LVANAGKTILELDITSEAGKARFWKLLAVADVLIDGRSDDILEKNGFRIEHVLTTCPQLIYLEVSCFDLTHRiFAELKNgPEEMANLCAG---LTGQDDVklvgHQLTSQ---TAATTGFLGAYAIVTALCQRQLS 860
                  5899999999999999999999999999999999876654....444444444......4569****************************************************************9987478898635777765544...45544431100333333...34578888899999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 2330.98
//
Query:       MMETSP1174-20130828|30876_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.74
# Mc/sec: 460.18
//
Query:       MMETSP1174-20130828|30877_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.5   0.1      0.016   12.3   0.1    1.0  1  TIGR00698 TIGR00698: conserved hypothetical protein
      0.022   11.3   0.0      0.022   11.3   0.0    1.1  1  TIGR03176 AllC: allantoate amidohydrolase


Domain annotation for each model (and alignments):
>> TIGR00698  TIGR00698: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.6e-06     0.016       6      61 ..      29      85 ..      24      90 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.6e-06
    TIGR00698  6 glllialilllalaagsidaladaalsalilaillGivlGntiylqise.evekgvl 61
                 + l+++++ ++  a++ + ++ + a  +l++a++ G++  nt  +  ++ +++++v 
  MMETSP1174-20130828|30877_1 29 QILFTIVVNIIGAAGTLLATMGHVAWVPLTVALVTGLATFNTENMYSDKaDKNRTVS 85
                 55667777777777777888999******************9766555414555555 PP

>> TIGR03176  AllC: allantoate amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.022     251     298 ..      41      89 ..       8      91 .] 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR03176 251 igdplvltfgkvepkpntvnvvpgevtftidcrhtdaall.refteele 298
                      l+ t+g+v  +p tv +v g  tf  +  + d+a   r  +++le
  MMETSP1174-20130828|30877_1  41 AAGTLLATMGHVAWVPLTVALVTGLATFNTENMYSDKADKnRTVSRKLE 89 
                  4457899**********************99999997754145556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 353.26
//
Query:       MMETSP1174-20130828|30879_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|30880_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1174-20130828|30878_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-25   87.4   1.5    2.6e-25   86.7   1.0    1.3  1  TIGR00741 yfiA: ribosomal subunit interface protein


Domain annotation for each model (and alignments):
>> TIGR00741  yfiA: ribosomal subunit interface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   1.0   6.4e-29   2.6e-25       3     100 ..      10     110 ..       9     112 .. 0.95

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 6.4e-29
    TIGR00741   3 inirgknveitealreyveeklar.lerylkeiievdvvlsveknrrrq..fkvevtvklkggviraeeesedlYaAidkaldkLerqLrklkekrkekir 100
                  i ++g+nve+t+a+ eyv++kl + l+++ + +++ dv+l+v +n r +  +++evt+ +kg v+r +e se++Ya id ++d L+r+Lrk ke+  +k++
  MMETSP1174-20130828|30878_1  10 IIVTGNNVEVTPAMLEYVNKKLDKvLDKHRQVVTKCDVHLTVVHNPRVKesHRAEVTLAVKGLVMRTSEDSENMYATIDAVADSLARKLRKFKERKDKKQS 110
                  5689********************9*****************999977789*********************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 966.35
//
Query:       MMETSP1174-20130828|30883_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 244.57
//
Query:       MMETSP1174-20130828|30886_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 927.92
//
Query:       MMETSP1174-20130828|30887_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.42
# Mc/sec: 1285.32
//
Query:       MMETSP1174-20130828|30881_1  [L=1026]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    5.0   4.6        2.8    4.4   3.2    1.2  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.2   0.00068       2.8     328     402 ..     865     940 ..     860     971 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00068
    TIGR00860 328 nyvvhkksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkgg.edleskteeeallksvppsea 402
                  + ++  ++ak k+k ++++ + ++k+k+e++++++p+++++e  +++++ +k + ++ ++ ++e + + + +++++
  MMETSP1174-20130828|30881_1 865 VALSTTAKAKAKEKAKENKEKAEEKEKAEETKASTPETSEQESGDVKMEDVKEEeAGTDDASNEAKASDAAKSKTK 940
                  44455556677777777777777777777778888*************9988876444443433333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1026 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.20s 00:00:00.97 Elapsed: 00:00:00.57
# Mc/sec: 2334.84
//
Query:       MMETSP1174-20130828|30884_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.0   0.2    2.2e-12   44.4   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00012   19.6   0.0    0.00027   18.5   0.0    1.5  2  TIGR01777 yfcH: TIGR01777 family protein
    0.00021   18.3   0.1    0.00045   17.2   0.0    1.5  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    0.00059   17.2   0.0    0.00092   16.6   0.0    1.2  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
     0.0017   15.0   0.0      0.021   11.5   0.0    2.2  2  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.022   11.8   0.0      0.052   10.6   0.0    1.5  2  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.1   3.1e-15   2.2e-12       2     113 ..      64     173 ..      63     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 3.1e-15
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeld.vEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytss 113
                  +v++ GatG++G+avvr+  ++G++  +lvr+++ ++n  +++  Ei++ d+ d++sl++++kG ++++   A     + d e   k++++ t + l+aA+e g ++ v  s+
  MMETSP1174-20130828|30884_1  64 RVVIAGATGYIGKAVVRESIRRGYSTTALVRDAAAAANEPAFKgGEIMVADVCDADSLSAKVKGADVVISCLASRTGMKDDAE---KIDYQATLNCLNAAREGGARHFVLLSA 173
                  6899*********************************99998637************************99998766655554...67899**************99998876 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-07   0.00027       1      62 [.      65     132 ..      65     141 .. 0.75
   2 ?   -2.7   0.0       1.1   7.4e+02     203     257 ..     249     306 ..     223     332 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.9e-07
    TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee......aeeealegvdavi 62 
                  v+i+G+tG iG+a+v+e  ++g++ ++l+r++ ++++e  ++  e++        + + +++g+d+vi
  MMETSP1174-20130828|30884_1  65 VVIAGATGYIGKAVVRESIRRGYSTTALVRDAAAAANEPAFKGGEIMVAdvcdadSLSAKVKGADVVI 132
                  79******************************988887766554444333343322233667777776 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.1
    TIGR01777 203 lvklilfaleneevsGvvNataPep.vrnkefakalakalhr..pallpvPklvlkll 257
                  +v++i  + + ++ + + N+  P+   ++++  k ++k +++  p llpvP  ++ ++
  MMETSP1174-20130828|30884_1 249 AVAMIDCITNPAKKNQIWNIGGPDEgYSMEAQGKMISKIVGKeePWLLPVPIGIFDAI 306
                  3566777777777778888888865256677777777777663245566666555555 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.5e-07   0.00045       1     120 [.      65     172 ..      65     201 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.5e-07
    TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfh.laaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhts 120
                  v+++Ga G+iG  +v + +++G++ +alv+  + +        ++ + k  e+++ d+ da+s+++ vkg+dvv+  la+  ++    +  +  +  + + tln l+aar+ + +++v  s
  MMETSP1174-20130828|30884_1  65 VVIAGATGYIGKAVVRESIRRGYSTTALVRDAAAAA-------NEPAFKGGEIMVADVCDADSLSAKVKGADVVIScLASRTGM----KDDAEKI--DYQATLNCLNAAREGGARHFVLLS 172
                  789**************************9887654.......344567889********************997524444443....3333334..457888888888888888877666 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06   0.00092      88     200 ..     154     272 ..     141     291 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-06
    TIGR03649  88 ikFidvavkkgvkrfvllsasaiekG..gpalgkv..haylkeleeveyavLRptWfmenfeeelhveaikeenk.lysAtsdgk...iPfvsaeDiArvAvkaLtdksaknteylvlGpe 200
                   + ++ a++ g ++fvllsa  +ek   +++ +k+   a l+++ +++y+++Rpt f + ++ +  ve +k  +  +y   + g+      +s  D+A   +  +t+ ++kn+ + + Gp+
  MMETSP1174-20130828|30884_1 154 LNCLNAAREGGARHFVLLSAFCVEKPwlQFQFSKLkfEAELTGQSDITYSIVRPTAFFKSVSGQ--VEVVKGGSPfVYFDLGGGRsatCNPISEPDLAVAMIDCITNPAKKNQIWNIGGPD 272
                  5667899999**************98776667765226899999*************9988765..5667766541555555554211445788888877777888888888777777775 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     3e-05     0.021       2      65 ..      65     124 ..      64     176 .. 0.82
   2 ?    1.2   0.0     0.041        28     233     278 ..     247     291 ..     243     296 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3e-05
    TIGR01179   2 iLvtGgaGyiGshvvrqllekgke..vvvlDnlskgskealkalekitevklvegdladkekleav 65 
                  ++++G++GyiG  vvr+  ++g++   +v D  + +++ a k +e      ++ +d+ d+ +l+a 
  MMETSP1174-20130828|30884_1  65 VVIAGATGYIGKAVVRESIRRGYSttALVRDAAAAANEPAFKGGE------IMVADVCDADSLSAK 124
                  899*******************98545788988888888888888......677777777777655 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.041
    TIGR01179 233 DlaeaHlaalealeeggesevynlG.agqgfsvkevieavkkvsgkd 278
                  Dla a ++ +   +  ++ +++n+G  ++g+s+    + ++k++gk+
  MMETSP1174-20130828|30884_1 247 DLAVAMIDCITNPA--KKNQIWNIGgPDEGYSMEAQGKMISKIVGKE 291
                  66666666655544..6889****72589****99999999999876 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.6e-05     0.052       2      36 ..      65      97 ..      64     103 .. 0.87
   2 ?   -2.7   0.0      0.85   5.8e+02     115     141 ..     152     178 ..     151     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.6e-05
    TIGR01746  2 vlLTGAtGfLGaylleeLlrrsteakviClVRaks 36
                 v++ GAtG++G+  ++e +rr    + ++lVR + 
  MMETSP1174-20130828|30884_1 65 VVIAGATGYIGKAVVRESIRRG--YSTTALVRDAA 97
                 8999*****************7..7899***9654 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.85
    TIGR01746 115 gtvevlrlaasgkakpliyvStlsvla 141
                   t ++l+ a +g a++++ +S + v +
  MMETSP1174-20130828|30884_1 152 ATLNCLNAAREGGARHFVLLSAFCVEK 178
                  58899****************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1193.77
//
Query:       MMETSP1174-20130828|30889_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 473.34
//
Query:       MMETSP1174-20130828|30888_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       342  (0.083374); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.20s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 434.46
//
Query:       MMETSP1174-20130828|30891_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 269.48
//
Query:       MMETSP1174-20130828|30892_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 339.40
//
Query:       MMETSP1174-20130828|30897_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1174-20130828|30896_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.42
# Mc/sec: 933.35
//
Query:       MMETSP1174-20130828|30895_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-204  678.5   2.3     2e-204  678.2   1.6    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   7.6e-168  557.5   0.5   9.5e-168  557.2   0.3    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    2.3e-13   47.8   0.9    6.9e-13   46.2   0.2    1.9  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    6.3e-10   36.8   1.4    9.3e-09   32.9   0.2    2.6  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  678.2   1.6  1.9e-207    2e-204       3     586 ..      19     613 ..      17     624 .. 0.94

  Alignments for each domain:
  == domain 1    score: 678.2 bits;  conditional E-value: 1.9e-207
    TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkveve.....dkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldke.kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge.....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaekt.lkeagdkleeeekekiekaveelkealkeedveekikakteeleka 586
                  +GidLGtt s+v v++ g+ ++i+n++G+ ttPs vaf++d  r+vGe ak q  +np nti+  krliGrk+   ev++++k+ p+++v  +  + +++v+     +k+++peeisa+i+ k+k+ +e+ylG +v++avitvPayfnd+qrqatkdaG+iaGl+v+riinePtaaaLayGl k+  +++++lvfdlGGGtfdvs++ ++dgvf+v  t Gd++LGG+dfd++++++++ee+k+++++dL++++ al+rl+ + e+ak  Ls ++++ i++  +    +g ++++ +++ra+fee+ ++ ++r++++v+++l++a+++ase+d+v+l+GGstriP++q ++ e++  kep ks+nPde+va Ga iq+++l+ e     ++d+lLldvtPLs+g+et Ggv+ +li+rnttiP+kk++ fst+ dnq++v ++v+ Ger++ +d + +g+f+L++ip++P+  p i+vtf+ida+Gil+ sa +k++gk ++iti + ++ l++++ie+m ++a + ++ed+ +  +vear e+++ +y++ +t lk+ + kl ee+k+ ie++ +e++e l+ ++ +e + + +++l++ 
  MMETSP1174-20130828|30895_1  19 VGIDLGTTYSCVGVWQNGRVEIISNEQGNFTTPSFVAFTND-GRIVGEGAKIQSAMNPLNTIFDSKRLIGRKFGdeEVKQDMKHWPFTIVPGQLgKPQIKVTdhtgeEKTFSPEEISAMIIGKMKDISENYLGGPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLGKKgAEETNVLVFDLGGGTFDVSLISIDDGVFKVIGTGGDSHLGGEDFDNRLVEHFLEEIKEKHEVDLTNNQRALRRLRMSCERAKRSLSDTTKAFIEIESL----HGDIDFTSNVSRARFEEMNAEPFRRCMDTVQSVLTEAGMEASEVDDVVLIGGSTRIPKIQAMLSEFFDgKEPCKSINPDEAVAHGATIQSAILRNEddseeLQDLLLLDVTPLSVGLETAGGVMEPLIDRNTTIPVKKTKKFSTSRDNQTSVLVKVYEGERKMVRDCNLIGKFNLNDIPKMPKKRPVIKVTFSIDADGILTCSATEKSSGKASKITIVNdKGRLTKDQIEKMCEDASKASAEDELNLRRVEARYELEAKVYSMANTiLKDPHSKLLEEDKTTIEETCTEVQEWLSAKHFRE-LLEFQNKLKEF 613
                  8****************************************.79****************************97669*************98866666666522333799************************************************************************998356678************************************************************************************998888755....78999************************************************************9966************************976667779******************************************************************************************************************9652688**************************************9876527999*************************99987.55555555543 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  557.2   0.3  9.3e-171  9.5e-168       2     576 ..      19     613 ..      18     626 .. 0.90

  Alignments for each domain:
  == domain 1    score: 557.2 bits;  conditional E-value: 9.3e-171
    TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGr..sledvkkeaeelpyeledakgemvrlktaqg.....evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk..aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklilkkagleaelskeek....kellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelF.kkepltdldPdevvAlGAalqadlLaknkrke...dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsy.gLsdeeiekmlkdslknaeeDmeaRalaekkveaerileal.ekalkadkdLlseeelkaikaaleklekaleeddaeaikaaiealeea 576
                  vGiDlGtt+s v + ++g++e++++e+g+++ ps v ++++ +  vG+ ak ++a +p nti   kRl+Gr  + e+vk+ +++ p++++ ++ + +++k+++      + +P e+sa i+ k+k  +e+ lg+ +k+avitvPAYF+d qrqatkdA+ +aglnv+R++nePtaAA+AYGl k  a+e+ ++v+DLGGGtFDvs++ +++GvF+v++tgGds+LGG+DfD++l++++l++ + ++e++ +++    + l  + ++ak+ L+d++++ +e++    + d++ ++sr+++ee+ +e  ++ +++v+++l +ag++++e+++vvl+GGstr+p+++++++e+F +kep ++++Pde vA GA++q+ +L +++ +e   dllLlDv+PLs+Glet GG++e +i RnttiPv+k+++F t +D+qt++ ++v  GeR +v+dc  +++F+L++ip m+     i+vtf++DadG+l+ sa ek++g+ +ki++ +    L++++iekm +d+ k ++eD    ++ e++ e e  + ++ ++ lk+ +  l ee++++i+++ +++++ l+ + ++++ +  ++l+e 
  MMETSP1174-20130828|30895_1  19 VGIDLGTTYSCVGVWQNGRVEIISNEQGNFTTPSFVAFTND-GRIVGEGAKIQSAMNPLNTIFDSKRLIGRkfGDEEVKQDMKHWPFTIVPGQLGKPQIKVTDHtgeekTFSPEEISAMIIGKMKDISENYLGGPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLGKkgAEETNVLVFDLGGGTFDVSLISIDDGVFKVIGTGGDSHLGGEDFDNRLVEHFLEEIKEKHEVDLTNNqralRRLRMSCERAKRSLSDTTKAFIEIESlhGDIDFTSNVSRARFEEMNAEPFRRCMDTVQSVLTEAGMEASEVDDVVLIGGSTRIPKIQAMLSEFFdGKEPCKSINPDEAVAHGATIQSAILRNEDDSEelqDLLLLDVTPLSVGLETAGGVMEPLIDRNTTIPVKKTKKFSTSRDNQTSVLVKVYEGERKMVRDCNLIGKFNLNDIPKMPKKRPVIKVTFSIDADGILTCSATEKSSGKASKITIVNDKgRLTKDQIEKMCEDASKASAEDELNLRRVEARYELEAKVYSMaNTILKDPHSKLLEEDKTTIEETCTEVQEWLSAKHFRELLEFQNKLKEF 613
                  8****************************************.5669*************************555688*************9998888887654322445789**********************************************************************99888999*************************************************7666665555555500005555566789*********999998655678999************************************************************5599***********************88766546689**************************************************************************************************************98776516*************999999988777889999988666555056666656666677899***************9999998888887765 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.12   1.2e+02       4      24 ..      18      38 ..      16      77 .. 0.70
   2 !   46.2   0.2   6.7e-16   6.9e-13     100     321 ..     155     386 ..     131     396 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.12
    TIGR00904  4 dlgidlGtantlvyvkgkGiv 24
                  +gidlGt+   v v ++G v
  MMETSP1174-20130828|30895_1 18 SVGIDLGTTYSCVGVWQNGRV 38
                 69*******999888777743 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 6.7e-16
    TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPve..eptgsmvvdiGGGttevavislg.Giv....vsksirvaGdeldeaiiky....irrkynl..liGertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsketk.lpvivaedpllavalG 321
                  + +i+vP+   + +r+a k++   aG + + +i+ep aaa+  +l  +  e t  +v d+GGGt +v++is+  G+     +     ++G+++d+ ++++    i++k+++     +r+  ++++    a+ + +d  +k  ++ + l   +  t +++  +  e  +ep ++ +++v+s+l ++  e + ++    +vl GG + +  ++ +ls+  +  + + + +p +ava+G
  MMETSP1174-20130828|30895_1 155 HAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLGKKgaEETNVLVFDLGGGTFDVSLISIDdGVFkvigTGGDSHLGGEDFDNRLVEHfleeIKEKHEVdlTNNQRALRRLRMSCERAKRSLSDT-TKAFIEIESLHGDIDFTSNVSRARFEEMNAEPFRRCMDTVQSVLTEAGMEAS-EVD--DVVLIGGSTRIPKIQAMLSEFFDgKEPCKSINPDEAVAHG 386
                  479*************************************9988876522778899***************973443111133456789999**9998874444788887620344566688999999999886544.44444445555779999****************************9998854.554..599***********99999864302334445555666655 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.9   1.9e+03     112     132 ..      20      40 ..      10      47 .. 0.59
   2 !   32.9   0.2   9.1e-12   9.3e-09      43     142 ..     135     241 ..     132     264 .. 0.85
   3 ?    1.8   0.0      0.03        31     185     218 ..     335     368 ..     306     382 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.9
    TIGR02529 112 vvdvGGGttGisilkkGkviy 132
                   +d+G     + + ++G+v  
  MMETSP1174-20130828|30895_1  20 GIDLGTTYSCVGVWQNGRVEI 40 
                  234444444666677776655 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 9.1e-12
    TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql.......kngavvdvGGGttGisilkkGkviysadeatGGth 142
                    i+ ++kd  e+ lG  +++a i+vP   ++++ +++ +    aGl+v+++++ePtaaa +  l       +n  v d+GGGt  +s++   + ++    + G +h
  MMETSP1174-20130828|30895_1 135 AMIIGKMKDISENYLGGPVKHAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLgkkgaeeTNVLVFDLGGGTFDVSLISIDDGVFKVIGTGGDSH 241
                  56899******************************************************9998874433333466799**********9988877777655555555 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.03
    TIGR02529 185 ivkkhiekqkvkdlylvGGassfsefedvfekel 218
                  +++  +e ++v+d+ l+GG++ +++++ ++++ +
  MMETSP1174-20130828|30895_1 335 LTEAGMEASEVDDVVLIGGSTRIPKIQAMLSEFF 368
                  4556689999***********9999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.51
# Mc/sec: 1969.48
//
Query:       MMETSP1174-20130828|30898_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   31.3   0.0    4.1e-08   30.6   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    6.5e-07   26.8   0.1    8.4e-07   26.4   0.1    1.1  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00011   20.0   0.0    0.00022   19.0   0.0    1.5  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
      0.019   12.4   0.1      0.033   11.6   0.0    1.5  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0     4e-11   4.1e-08      38     152 ..      39     158 ..      22     176 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4e-11
    TIGR01934  38 ekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdav.......tiafGlRNvtdiekaLkelaRVlkpggrlvilefskpknall 152
                  +k++++l   +G  +l+  + +     +t +D+s  +++   +k+++k+  ++ +++ ++ +L f+d+sfdav       +i  G   +++++k  +e+ RVlk +g ++i+    p+n+l 
  MMETSP1174-20130828|30898_1  39 KKDDQILMAGAGNSRLSEDMYEDGYNTITNIDISRVVVDQMVDKYRDKT--PLPYQQMNVCSLEFPDESFDAVvakgtmdAILCGEGSTANVAKMCQEVSRVLKVHGVFIIVSYGVPDNRLQ 158
                  3788898888999999999999888*******************98775..79******************9955554444667888999**********************9999988654 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   8.2e-10   8.4e-07      46     129 ..      32     119 ..      25     153 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 8.2e-10
    TIGR02021  46 ewlpkdslkGkkvlDAGCGtGllsielAkrGai.vkavDiseklvelarkraekedeaenveFevndleslegkfDavva...lDvli 129
                  e ++k   k  ++l AG G   ls+++ ++G++ ++ +Dis  +v++  ++++++ +    + +v +le  ++ fDavva   +D+++
  MMETSP1174-20130828|30898_1  32 ETIQKYIKKDDQILMAGAGNSRLSEDMYEDGYNtITNIDISRVVVDQMVDKYRDKTPLPYQQMNVCSLEFPDESFDAVVAkgtMDAIL 119
                  344444445599*******************963789******************************************755577775 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.1e-07   0.00022      23     131 ..      30     146 ..      25     155 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.1e-07
    TIGR02072  23 LlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls...nvqficgdieklplekksfDlivSnlalQWl.......ddlsevlaelarvlkpgGlla 131
                  + e ++++   ++ ++L +G+G   l++ + +   +  ++ +Dis     q+ +k++    + ++++++++l++ ++sfD +v+  ++  +        + +++ +e+ rvlk  G+++
  MMETSP1174-20130828|30898_1  30 MAETIQKYI-KKDDQILMAGAGNSRLSEDMYEDGYNT-ITNIDISRVVVDQMVDKYRdktPLPYQQMNVCSLEFPDESFDAVVAKGTMDAIlcgegstANVAKMCQEVSRVLKVHGVFI 146
                  556666665.33479************9999998777.9**************9999999999********************988776541122222345555666666666666665 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05     0.033       5     102 ..      32     139 ..      30     175 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
    TIGR02081   5 eailelipagsrvLDlGcGdGeLLallrdekqvegaGleideenvlacvarGve...viqqdldegLeafedksfDvvvlsqtlqav.......rnteeiLdellRvg 102
                  e+i+++i++  ++L  G+G+ +L + + ++   + + ++i+   v + v +  +      q+++     f+d+sfD vv + t+ a+        n++++ +e+ Rv 
  MMETSP1174-20130828|30898_1  32 ETIQKYIKKDDQILMAGAGNSRLSEDMYEDGYNTITNIDISRVVVDQMVDKYRDktpLPYQQMNVCSLEFPDESFDAVVAKGTMDAIlcgegstANVAKMCQEVSRVL 139
                  689999********************9999999999999999988888887654111556888888889**************9985222222256667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 857.93
//
Query:       MMETSP1174-20130828|30900_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.3    4.8  10.8        5.7    4.7   7.5    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        8.9    3.2  14.1        9.3    3.2   9.8    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.5    0.0028       5.7      71     103 ..       4      36 ..       1      78 [. 0.47

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0028
    TIGR03499  71 eeaepkklskaeekeekekeaeekaaeaaqeae 103
                  +++++++++++++++++++++ +++++a+q+++
  MMETSP1174-20130828|30900_1   4 QQQQQQQQQQQQQQQQQQQQMPQSQSQAQQHQT 36 
                  222222222222222222222222222333322 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   9.8    0.0045       9.3     112     167 ..       4      57 ..       1      84 [. 0.32

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0045
    TIGR03752 112 kelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvgl...Gleegdkaqs 167
                  ++ +++++q++++q++ ++++ ++     +++a+++++   +  +l   G+++ +++q 
  MMETSP1174-20130828|30900_1   4 QQQQQQQQQQQQQQQQQQQQMPQS-----QSQAQQHQTPGGVSSALqiqGYQPPSQSQG 57 
                  111222222222222222222222.....222222222222222221124444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       572  (0.139444); expected 82.0 (0.02)
Passed bias filter:                      364  (0.0887372); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 328.09
//
Query:       MMETSP1174-20130828|30902_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 931.06
//
Query:       MMETSP1174-20130828|30905_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|30899_1  [L=1160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094    9.7   0.0       0.15    9.0   0.0    1.2  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family


Domain annotation for each model (and alignments):
>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   3.7e-05      0.15      81     119 ..      67     105 ..      56     111 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 3.7e-05
    TIGR00902  81 lliavalslvahvawlllvaiGlyalvfsalvpltdala 119
                   +  +a+   a   wl l+ iG +a v  a  p++ al 
  MMETSP1174-20130828|30899_1  67 KVQETAVVQNAESTWLSLIYIGRFANVAQASAPIGGALN 105
                  5566789999*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 2595.04
//
Query:       MMETSP1174-20130828|30906_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 883.31
//
Query:       MMETSP1174-20130828|30908_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1174-20130828|30903_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 1744.40
//
Query:       MMETSP1174-20130828|30909_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-82  273.6   0.4    5.2e-82  273.4   0.3    1.0  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    4.5e-56  188.3   0.3    5.7e-56  187.9   0.2    1.0  1  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
    2.2e-28   95.4   1.0    6.4e-28   93.9   0.7    1.5  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    0.00079   16.3   0.2       0.26    8.0   0.0    2.2  2  TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.4   0.3   5.1e-85   5.2e-82       3     289 ..      41     335 ..      39     336 .. 0.96

  Alignments for each domain:
  == domain 1    score: 273.4 bits;  conditional E-value: 5.1e-85
    TIGR00128   3 ialvFPGqGsqavGmgkdlleeypiakelfdqAdeiLgydlkklvqegdaeelnktaytqPalyvvsvilyellkekg....glkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeake...evvslanfnspeqvvisGtkkevekaeallk.eagakralpLevsgafHselmkpaaeklkelleaiqfnkatvpvisnvdaeaetekdklkekLveqltspvrwtesveklaekGvtefaEvGpGkvLtGLikrikkd 289
                  +a+ FPGqG+q vGm kd++e++p a elf +A+eiLgydl + ++ g++e l+ t+ +qPa++v+s++++e++k+++      +   ++G sLGEysAl+ aga++Fed+++++k Rge mq a+   +++m+ v+gld+e++++++  a+e   ++v++an  + +   +sG  k+   + +++k e +a++ + L+v+gafH+ +m+pa ++l e+l+ +++ ++ +pvisnvda+a+ +  ++k+ L +q+tspv+w+ ++++++e    + +E+GpGkv+ G+ kr++k+
  MMETSP1174-20130828|30909_1  41 TAFCFPGQGAQYVGMCKDVVETVPKAAELFSKASEILGYDLLERCVSGPKELLDTTEVSQPAIFVASMAAVEKMKQEQgeeaVAEATCAMGLSLGEYSALCFAGAISFEDGVRVTKARGEAMQAASDLTDTTMVSVIGLDKEKVIELCAVATErsgSQVQIANLLCKGNYAVSGDSKACALLMEIAKpEFKARMTIKLAVAGAFHTDFMAPAVDTLGEVLDTVEITAPRIPVISNVDAKAHYDPSEIKDILKTQVTSPVQWETTMTNMVEGDYGKGFELGPGKVIAGILKRVSKT 335
                  79**********************************************************************999988443224567889**********************************************************9998877889*****************************9**********************************************************************************999*******************976 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.9   0.2   5.5e-59   5.7e-56       2     282 ..      42     339 ..      41     342 .. 0.93

  Alignments for each domain:
  == domain 1    score: 187.9 bits;  conditional E-value: 5.5e-59
    TIGR03131   2 lllfpGQGsqragmlae.lpdepkaaavleeasevlgadvlel...ddaealastrsaQllilaagvaaaraLkaelek.....psavAGySvGelaAavvagalefedaLkLvalRaelMeqavpe.eygllavlGleeeevealvakag......vyiAiinaedqvViaGsraalsavaeaar.aaGasrakrlaVsvpSHtkllakaaeelaealaeiplaapklpvlsaiearkvrdaaallddLaqqiakpvdWhavveaiaergarlvielgPGsaLtklanelfpelpai 282
                  ++ fpGQG+q  gm ++ +++ pkaa+++ +ase+lg d+le      +e l  t + Q++i++a++aa++++k+e  +     + ++ G+S+Ge++A + aga++fed++++ ++R+e+M++a++  ++ +++v+Gl++e+v +l+a a+      v iA++  + ++ ++G  +a + + e a+ +  a+ + +laV+ + Ht+++a a++ l e+l+++++ ap++pv+s+++a++ +d+ ++ d L +q+  pv+W  ++ +++e  +    elgPG++++ +++++ +++p+ 
  MMETSP1174-20130828|30909_1  42 AFCFPGQGAQYVGMCKDvVETVPKAAELFSKASEILGYDLLERcvsGPKELLDTTEVSQPAIFVASMAAVEKMKQEQGEeavaeATCAMGLSLGEYSALCFAGAISFEDGVRVTKARGEAMQAASDLtDTTMVSVIGLDKEKVIELCAVATersgsqVQIANLLCKGNYAVSGDSKACALLMEIAKpEFKARMTIKLAVAGAFHTDFMAPAVDTLGEVLDTVEITAPRIPVISNVDAKAHYDPSEIKDILKTQVTSPVQWETTMTNMVEGDYGKGFELGPGKVIAGILKRVSKTAPMT 339
                  89*************9967899******************998774556677888899***************9986542111256889***********************************9977********************99999*****************************9998356888999***********************************************************************************************99998876 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.7   6.2e-31   6.4e-28     582     876 ..      42     329 ..      30     337 .. 0.83

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 6.2e-31
    TIGR02813 582 aalfaGqGsqylnmGrelacnfpelrqaladadkvfsqagktalssvlypipvfndesrkaqeealtntayaqsaiGvlsvgqyklltq.....aGfkadlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavilkvkksaevikncik.diegvsianynsptqlviaGasaaiqlaakalkekGfka...iplpvsgafhtplvahaqkpfsaaidkakfnkpkvplysngtgklhkndakaikkalkdhilesvhfseeleaiyaaGarvfvefGpknilqklv 876
                  a  f GqG+qy+ m +++    p+  +  ++a ++++ + +              + ++   +e+l  t+ +q+ai v s++  + + q     a  +a    G s+Ge salc aG is +d ++++ +rG+am a+s+ +d+ +   + l+++k +e  +   + +  +v+ian  ++ +  ++G s+a +l + ++ +  fka   i l v+gafht ++a a   + + +d  + + p++p+ sn  +k+h  d ++ik  lk  +   v++++ + ++ +       e+Gp  ++  + 
  MMETSP1174-20130828|30909_1  42 AFCFPGQGAQYVGMCKDVVETVPKAAELFSKASEILGYDLL--------------ERCVSGPKELLDTTEVSQPAIFVASMAAVEKMKQeqgeeAVAEATCAMGLSLGEYSALCFAGAISFEDGVRVTKARGEAMQAASDLTDTTMVSVIGLDKEKVIELCAVATErSGSQVQIANLLCKGNYAVSGDSKACALLM-EIAKPEFKArmtIKLAVAGAFHTDFMAPAVDTLGEVLDTVEITAPRIPVISNVDAKAHY-DPSEIKDILKTQVTSPVQWETTMTNMVEGDYGKGFELGPGKVIAGIL 329
                  55789999999999998887777665555555554443322..............3455667899******************99997633332456677788***************************************99888888899999999988655414578*******************999866.6777778865559*********************************************6.7889**********************986655566999988876655 PP

>> TIGR01143  murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00072      0.73     129     179 ..      80     130 ..      71     242 .. 0.90
   2 !    8.0   0.0   0.00025      0.26     134     171 ..     252     289 ..     248     310 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00072
    TIGR01143 129 avlEmGaskpGeiaelaeivkPdiavitnigeaHleefgslegiaeaKsei 179
                   +lE  +s p e+ +++e+ +P i v    + + +++ ++ e++aea + +
  MMETSP1174-20130828|30909_1  80 DLLERCVSGPKELLDTTEVSQPAIFVASMAAVEKMKQEQGEEAVAEATCAM 130
                  579999****************************************98876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00025
    TIGR01143 134 GaskpGeiaelaeivkPdiavitnige.aHleefgsleg 171
                  +++  Ge+ +++ei+ P i vi n+++ aH  + +++++
  MMETSP1174-20130828|30909_1 252 AVDTLGEVLDTVEITAPRIPVISNVDAkAHY-DPSEIKD 289
                  67899********************861554.4445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1223.57
//
Query:       MMETSP1174-20130828|30928_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|30932_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.5   1.3      0.038   12.3   0.4    1.8  2  TIGR03628 arch_S11P: archaeal ribosomal protein S11P


Domain annotation for each model (and alignments):
>> TIGR03628  arch_S11P: archaeal ribosomal protein S11P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.051   2.1e+02      24      59 ..      26      61 ..       9      90 .. 0.64
   2 ?   12.3   0.4   9.3e-06     0.038      48      91 ..      91     135 ..      51     141 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.051
    TIGR03628 24 aetiakvsGGmvvkadrdessPyaamqaakkvaeka 59
                 a+ i + + G + k+  + +   a+++a ++v ++a
  MMETSP1174-20130828|30932_1 26 ADKIFQKTQGVMLKQRENAGDGGASFNALRNVFASA 61
                 455566666666666555555555555444443333 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.3e-06
    TIGR03628  48 amqaakkvaekakekgieglhikvraPGgs.ksksPGPGaqaair 91 
                  +++  ++ a++a+     g+   vraP ++ +++ PG Gaq  ++
  MMETSP1174-20130828|30932_1  91 SVKHLTNHANNARRMAKYGISSTVRAPSRRkRQNLPGTGAQRIVK 135
                  556667788889988999999******98735778******9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 621.63
//
Query:       MMETSP1174-20130828|30938_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   17.5   1.2     0.0016   16.9   0.8    1.3  1  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain
  ------ inclusion threshold ------
      0.033   12.5   1.7      0.075   11.4   1.2    1.7  1  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
      0.035   12.9   2.6      0.035   12.9   1.8    1.7  2  TIGR02595 PEP_exosort: PEP-CTERM protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   1.2e-06    0.0016       5      33 ..     118     144 ..     117     145 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.2e-06
    TIGR01167   5 TGessnslllllGllllglaglllrkrkk 33 
                  TG  ++++ +l+Gl+l+++a++l+r+r++
  MMETSP1174-20130828|30938_1 118 TG--GMMISSLVGLVLVLGAIVLSRRRRR 144
                  66..88999******************98 PP

>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   5.5e-05     0.075      18      33 .]     129     144 ..     117     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.5e-05
    TIGR03901  18 gLlgLgllalrRRRRr 33 
                  + l+Lg+  l RRRRr
  MMETSP1174-20130828|30938_1 129 LVLVLGAIVLSRRRRR 144
                  5789999999999997 PP

>> TIGR02595  PEP_exosort: PEP-CTERM protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   3.1e+03      12      16 ..     117     121 ..     112     123 .. 0.44
   2 ?   12.9   1.8   2.6e-05     0.035       5      24 .]     124     143 ..     124     143 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.3
    TIGR02595  12 lglgf 16 
                    +g+
  MMETSP1174-20130828|30938_1 117 STGGM 121
                  33333 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.6e-05
    TIGR02595   5 stllllllglgflllrRrkk 24 
                  s+l++l+l+lg+++l+Rr++
  MMETSP1174-20130828|30938_1 124 SSLVGLVLVLGAIVLSRRRR 143
                  89****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 730.34
//
Query:       MMETSP1174-20130828|31000_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-59  199.3   0.5      2e-59  199.0   0.3    1.0  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.3   4.8e-63     2e-59       1     228 []      43     279 ..      43     279 .. 0.95

  Alignments for each domain:
  == domain 1    score: 199.0 bits;  conditional E-value: 4.8e-63
    TIGR00419   1 lviinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeve.seiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleereaa..rtinnvattaaaaA.....lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                  ++ +n+K n  + + ++ +a+  + +a++  +ev++a+p+ +++ v+  +e ++iqv+Aq ++  +sGaftG + A m++ +G+ ++l gHsErRs++  +d +++ kv ++ e  + +++C+get+ e ea+  +++n+++ +++        ++ +v+A+EPv++iGtG +     a+ v++s+r  l+k  s e+a+svr++yG+svt  +  el+ ++d+dG L+++a+l ae
  MMETSP1174-20130828|31000_1  43 FIAGNWKENPVTLQDATSLAESLKPLAGSLPCEVGIAVPYPFISAVAGVLEgTDIQVMAQSIHFEDSGAFTGAVAATMVESVGCSYSLAGHSERRSVFGDSDAVVNSKVKKILETKMGAILCIGETQGEFEAGltNEVNAIQLSKGLSGvsaedMSRVVIAYEPVWAIGTGLVCPSDTAQLVHESIRAQLAKlYSSEIADSVRIQYGGSVTPDSVDELMSKPDIDGCLVGGASLVAE 279
                  689************************************************99******************************************************************************7622668999888865544558899************************************99****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.53
# Mc/sec: 722.20
//
Query:       MMETSP1174-20130828|31005_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-11   39.4   3.4    8.8e-11   39.4   2.4    1.9  2  TIGR03052 PS_I_psaI: photosystem I reaction center subunit VIII


Domain annotation for each model (and alignments):
>> TIGR03052  PS_I_psaI: photosystem I reaction center subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.47   1.9e+03      20      25 ..      10      15 ..       8      15 .. 0.60
   2 !   39.4   2.4   2.1e-14   8.8e-11       1      31 []      74     104 ..      74     104 .. 0.96

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.47
    TIGR03052 20 maLlfl 25
                  a+lf+
  MMETSP1174-20130828|31005_1 10 FASLFV 15
                 577774 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 2.1e-14
    TIGR03052   1 afLPsIFVPLVGLvfPAvfmaLlflyIeaed 31 
                  afLP I VPLVGL+fP + maL fl +e++d
  MMETSP1174-20130828|31005_1  74 AFLPPIMVPLVGLIFPGFGMALAFLLVETKD 104
                  7***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 427.02
//
Query:       MMETSP1174-20130828|31007_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 862.05
//
Query:       MMETSP1174-20130828|31045_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.67
# Mc/sec: 262.01
//
Query:       MMETSP1174-20130828|31055_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|31082_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 939.15
//
Query:       MMETSP1174-20130828|31097_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|31140_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|31195_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   13.0   0.0     0.0087   12.9   0.0    1.0  1  TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog


Domain annotation for each model (and alignments):
>> TIGR02291  rimK_rel_E_lig: alpha-L-glutamate ligase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.1e-06    0.0087     186     213 ..      22      51 ..      14      60 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-06
    TIGR02291 186 lhqGavGvGidlatGktlrav..wlnqpie 213
                   h+GavG G+d + G t+  v  +l qp++
  MMETSP1174-20130828|31195_1  22 SHKGAVGSGVDATVGATVSDVvvQLSQPVQ 51 
                  6****************9875126667775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 286.73
//
Query:       MMETSP1174-20130828|31210_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 544.99
//
Query:       MMETSP1174-20130828|31222_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1174-20130828|31324_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|31380_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    5.1   7.7        2.8    4.9   5.4    1.2  1  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.4   0.00069       2.8      48      78 ..       2      43 ..       1      62 [. 0.63

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00069
    TIGR02740 48 pkpkeeeeklepapepa...........aeaaaaepakeela 78
                 ++ +eeee ++p+pep+           +e+++a +++++ a
  MMETSP1174-20130828|31380_1  2 EEDEEEEEDVDPEPEPEpeppkgkkmtkKEKKKAAAEQQRAA 43
                 667888889999999994444444443344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 241.35
//
Query:       MMETSP1174-20130828|31396_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   16.0   0.2     0.0039   15.6   0.1    1.3  1  TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ
  ------ inclusion threshold ------
      0.022   12.2   0.4      0.025   12.0   0.3    1.1  1  TIGR03338 phnR_burk: phosphonate utilization associated transcriptional regulator
      0.029   12.2   0.9      0.031   12.1   0.6    1.1  1  TIGR02480 fliN: flagellar motor switch protein FliN


Domain annotation for each model (and alignments):
>> TIGR03318  YdfZ_fam: putative selenium-binding protein YdfZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.9e-06    0.0039      15      47 ..      26      58 ..      17      59 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
    TIGR03318 15 srVmiagtGavdvikaihtegltaeqirrekvV 47
                 + Vm+ g+G+v+ +k+i  e ++ +q++ +k V
  MMETSP1174-20130828|31396_1 26 KDVMMEGNGQVQQLKKILEEKVDQKQLNDAKAV 58
                 57***************************9998 PP

>> TIGR03338  phnR_burk: phosphonate utilization associated transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   1.9e-05     0.025      82     127 ..       3      54 ..       1      58 [. 0.66

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
    TIGR03338  82 adeiyelravldelvgralakritae......klkvlkelldeledaakkkd 127
                   dei +l+a+lde vg++  + ++        ++++lk++l+e  d  + +d
  MMETSP1174-20130828|31396_1   3 NDEIQQLKALLDEKVGQKQLNDVKDVmmegngQVQQLKKILEEKVDQKQLND 54 
                  59**************987777654311122256667777766655555555 PP

>> TIGR02480  fliN: flagellar motor switch protein FliN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   2.3e-05     0.031       7      46 ..       8      48 ..       3      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.3e-05
    TIGR02480  7 dipveltvelGksrit.lkdllkleeGsvieLdkkagepld 46
                 + +  l  ++G+++++ +kd++  ++G+v +L k ++e++d
  MMETSP1174-20130828|31396_1  8 QLKALLDEKVGQKQLNdVKDVMMEGNGQVQQLKKILEEKVD 48
                 55666777999999955***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 229.04
//
Query:       MMETSP1174-20130828|31402_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.0   0.0      0.036   10.9   0.0    1.0  1  TIGR02124 hypE: hydrogenase expression/formation protein HypE


Domain annotation for each model (and alignments):
>> TIGR02124  hypE: hydrogenase expression/formation protein HypE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.7e-06     0.036     139     205 ..      23      88 ..      10      97 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.7e-06
    TIGR02124 139 nttgiGvvekgaelsakeikaGdkiivsgeigdHgaailavReeleletelesDca.alnelveallk 205
                  +t g+ v++++++   ++ + Gd +i  +++  Hg +  a R + +l t+++ D + +l+++vea  +
  MMETSP1174-20130828|31402_1  23 QTLGLSVLPSSNNSMGSAESDGDCLICGDNLDGHGRH--ARRCGSNLATKVHTDLKqSLKTMVEAAAA 88 
                  46799999999999999999***************98..7888***********86268889988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|31422_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1194.34
//
Query:       MMETSP1174-20130828|31428_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 237.58
//
Query:       MMETSP1174-20130828|31429_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 175.99
//
Query:       MMETSP1174-20130828|31443_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-159  528.8   0.0     2e-159  528.6   0.0    1.0  1  TIGR01060 eno: phosphopyruvate hydratase
    3.1e-06   24.3   0.0    4.8e-06   23.6   0.0    1.2  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
    1.2e-05   22.3   0.1    0.00046   17.1   0.0    2.1  2  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases
    0.00098   16.1   0.1     0.0042   14.0   0.2    1.7  2  TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.6   0.0  1.9e-162    2e-159       1     422 [.      41     470 ..      41     473 .. 0.96

  Alignments for each domain:
  == domain 1    score: 528.6 bits;  conditional E-value: 1.9e-162
    TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek......sltseelieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkkaf 422
                  i+ v++r+++dsrGnPtvev+vi++dg + ra  PsGastG  ea elrd+  + y+gkGv+ av++vn++i p+l+G d +dq+ id+++ eldgt+nks+lGanail+ slav+ka a a+++pl+ + ++        ++lPvP  n+inGG+ha nkl +qef+++P gae+++e++ +g+evfh+lk ++k+k    at +GdeGGfaP  +  +  l + +eaiekagy   +  +l ldva+sef  ++k++y l+ ++        l+ +el++++++++ekypiv ied+++++dw  ++++ +++Gdkvq+vGddl vtn+ ++ + +e+++an++l+k+nqiGt++e+++avk++k++g+ ++ shrsGeted+ iadlav+l +gqiktG+  r+er akynqLlrieee+g++a +agk+  
  MMETSP1174-20130828|31443_1  41 ISGVKGRQIIDSRGNPTVEVDVITTDG-LFRASCPSGASTGIYEAAELRDGG-SWYMGKGVQGAVNHVNSTIGPALLGKDPTDQEGIDALMNELDGTPNKSNLGANAILGASLAVSKAGAGAKKIPLFMHYADLAgnplnEYTLPVPCFNVINGGEHAGNKLAFQEFFVIPTGAETFSESMAMGCEVFHNLKAVIKAKFggDATLIGDEGGFAPPCD-VDSGLAMCMEAIEKAGY--LDKFTLGLDVASSEFKVDGKNQYDLDFKSAdkdpslLLSGDELMDLYAKMCEKYPIVTIEDPFDQDDWANWSKMCNKMGDKVQIVGDDLTVTNPTKIVRAVEENAANCLLLKVNQIGTISESIAAVKMSKQNGWGVMTSHRSGETEDSYIADLAVGLCTGQIKTGAPCRGERTAKYNQLLRIEEEVGNKAVFAGKNFR 470
                  67899**********************.669********************9.99************************************************************************988766554455599******************************************************995459**************9.7789*************..7889*******************99988777788888899**********************************************************************************************************************************************************9875 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.7e-09   4.8e-06     196     279 ..     323     409 ..     314     413 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.7e-09
    TIGR01928 196 LdrydllyiEePfkadDlselkelkkelltpicl...DEsitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                   ++y ++ iE+Pf+ dD  + +++ +++   + +   D  +t+  ++ +++e +a++ + +K+  +G + e+  ++ + k++g +v+
  MMETSP1174-20130828|31443_1 323 CEKYPIVTIEDPFDQDDWANWSKMCNKMGDKVQIvgdDLTVTNPTKIVRAVEENAANCLLLKVNQIGTISESIAAVKMSKQNGWGVM 409
                  578999******************9998665544343779******************************************99886 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0087       8.9      48      97 ..      88     140 ..      68     166 .. 0.77
   2 !   17.1   0.0   4.5e-07   0.00046     215     289 ..     328     405 ..     316     437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0087
    TIGR02534  48 viGGlayGeesvesikvlidtylaPvlvgrkate...iaailadlekvvagnr 97 
                    GG +y +  v++    +++ + P+l+g++ t+   i a +++l+   +++ 
  MMETSP1174-20130828|31443_1  88 RDGGSWYMGKGVQGAVNHVNSTIGPALLGKDPTDqegIDALMNELDGTPNKSN 140
                  469**************************997763457777888877666555 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.5e-07
    TIGR02534 215 velieqPtaaedlealarltarl..evpimade.avtgPedalelakksaadvialkiaksGGlleakevaaiakaag 289
                  +  ie P  ++d +   ++++++  +v i+ d+ +vt P + ++ ++++aa+ + lk+++ G ++e+   ++++k  g
  MMETSP1174-20130828|31443_1 328 IVTIEDPFDQDDWANWSKMCNKMgdKVQIVGDDlTVTNPTKIVRAVEENAANCLLLKVNQIGTISESIAAVKMSKQNG 405
                  6679***************9997557999998747999*****************************99999988776 PP

>> TIGR01502  B_methylAsp_ase: methylaspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.16   1.7e+02      92     167 ..     106     184 ..      98     226 .. 0.70
   2 !   14.0   0.2   4.1e-06    0.0042     283     375 ..     339     432 ..     319     440 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.16
    TIGR01502  92 vekavaekligrdvarvkda...akvfekladernlhtairyGvsqallaaaakarkttmaevvadeldleleteavPv 167
                  v+ ++ ++l+g+d +         ++++   ++ nl      G s a+ +a a a+k+ +    ad  + +l+  ++Pv
  MMETSP1174-20130828|31443_1 106 VNSTIGPALLGKDPTDQEGIdalMNELDGTPNKSNLGANAILGASLAVSKAGAGAKKIPLFMHYADLAGNPLNEYTLPV 184
                  6677888888888887654421456667777888898888899999999999999988877777777766665554444 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.1e-06
    TIGR01502 283 amaelraelddrGvaaeivadewcntv.edvklfvdakaadlvqiktPdvGgvaesaravlyckandvgayvGGtcnetdlsaeasvhvalatd 375
                    a+  +  ++ G +++iv d+   t    +   v+ +aa+ + +k   +G++ es  av++ k n+ g        et+ s  a   v+l t+
  MMETSP1174-20130828|31443_1 339 DWANWSKMCNKMGDKVQIVGDDLTVTNpTKIVRAVEENAANCLLLKVNQIGTISESIAAVKMSKQNGWGVMTSHRSGETEDSYIADLAVGLCTG 432
                  455666677788999******98655424555567888999999************************************99999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 1399.08
//
Query:       MMETSP1174-20130828|31631_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-34  114.8   2.8    1.8e-20   70.5   0.0    3.1  3  TIGR00198 cat_per_HPI: catalase/peroxidase HPI


Domain annotation for each model (and alignments):
>> TIGR00198  cat_per_HPI: catalase/peroxidase HPI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   4.3e-24   1.8e-20      53     173 ..      73     191 ..      63     201 .. 0.87
   2 !   28.7   0.0   1.9e-11   7.9e-08     219     260 ..     206     246 ..     196     252 .. 0.87
   3 !   15.7   0.3   1.6e-07   0.00066     296     395 ..     247     337 ..     245     346 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 4.3e-24
    TIGR00198  53 dlaavkkdlkelltesqdwwpadfghyggllirlawhaagtyriidgrggaadgsqrfaplnswpdnvnldkarrllwpikkkygrklswadliilagtvaledmglkvfgfaagredife 173
                  d++++++d+++++ +++     d  + ++ l+rlawh++gty  +d  gg++  ++rf p   w  n  l  ar +l p+kkky   +s+adl+ +ag va+e+mg  +  ++ gr d  +
  MMETSP1174-20130828|31631_1  73 DFESIREDIENMV-DADFEKRDDGTSMAPTLVRLAWHCSGTYSCADKTGGSNGCQMRFNPEAGWGANAGLSTARLFLEPLKKKYP-GVSFADLYTFAGVVAIESMGGPTIPWSPGRIDHND 191
                  7778888887755.4444445677789*********************************************************6.69******************999999999988655 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 1.9e-11
    TIGR00198 219 spdplsaaqeirvtfarmgmndeetvaliagghtlgkchgag 260
                   + p+++aq++r  f+rmg+nd+e val +g h+lg+ch  +
  MMETSP1174-20130828|31631_1 206 MGSPVATAQHLRDIFNRMGFNDQEIVAL-SGAHALGRCHEDA 246
                  578************************8.79********765 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 1.6e-07
    TIGR00198 296 sglevvwtttptkfdnnyleilfkyewelkkspagaiqfeavdakeiikdaedpnkkrkpimlvadlalrfdpefekisrrfleepeefeeafakawfkl 395
                  sg  + w+ + t  +n+y+++l + +w  kk+  g+  ++  d   +    edp+     +ml +d+ l +d ef+k    +  + + f + fa  + kl
  MMETSP1174-20130828|31631_1 247 SGYWGPWSFSETTLSNEYFRLLKEEKWTPKKTHNGQ-PWKGPD---Q---FEDPTG--SLMMLPSDIVLTQDAEFDKYVTAYAADEDLFMKDFAAVFGKL 337
                  788899*************************99996.465544...3...346654..568*********************************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1175.02
//
Query:       MMETSP1174-20130828|31672_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 344.11
//
Query:       MMETSP1174-20130828|31737_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|31758_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|31810_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|31827_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1174-20130828|31847_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|31852_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 315.83
//
Query:       MMETSP1174-20130828|31876_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|31895_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-136  454.0   0.0   1.4e-136  453.7   0.0    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase
     0.0016   15.4   0.1      0.039   10.8   0.0    2.5  3  TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.7   0.0  6.6e-140  1.4e-136       3     473 ..      53     516 ..      51     520 .. 0.93

  Alignments for each domain:
  == domain 1    score: 453.7 bits;  conditional E-value: 6.6e-140
    TIGR01064   3 tkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk....eevklkkgekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedkvivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveq.gvdlvaaSFvrkaedvkevrevleekgakdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskakkssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvdeeeeelekalkkalellkekgilkkg.dlvvviqagavlekeketntikv 473
                  +k vaT+GP+t +k++++kl  aGv+v RlN+SHg  ++  +  e +re++ k+g+p+++l+D++Gp+ Rvg + +     +  lkkg+   ++ ++ +eeg+e++vs+  +++++ +++G+++l+dDGk+ ++V e+ ed v++ev n+g+++s+kg nlp++ v   a++ kD++dl+f +++ ++d+va+SFv+ka d+ ++r+++ ++ +   k++aKiE++++++n+++I  + dgimvARGDLGve++ e+vp+lQk++i +cr++gkpvi+ATqmL+Sm+ np PTRAE sD+a A++dG+davMLSgE+a+G YPve+V++++k+++++e+  + +t ++      +   ++++av+++a +++ +  aka+vv++ sg ++ + s+ rp +pi+avt++  var lal++ v+pv++d  +   e+++++ +e +++kg+++++ d++vv++ + + +     n+i+v
  MMETSP1174-20130828|31895_1  53 VKQVATLGPKTFKKDMIEKLFLAGVDVFRLNLSHGAEDKV-EPSEFIRELEVKYGRPIGVLVDIQGPKHRVGMFPNpdegTKAYLKKGQMYRFDLNT-DEEGDETRVSLPHPDVMSALEVGHRVLIDDGKMRVVVREKGEDYVVCEVLNDGTISSRKGFNLPDTYVPGSAMTPKDLADLDFCLKNiDFDWVALSFVQKADDILQLRKLMGDHPG---KVLAKIEKPSAIDNLESITDVCDGIMVARGDLGVEMQPEDVPMLQKQIIDECRRQGKPVIVATQMLESMMDNPAPTRAECSDIATAIFDGADAVMLSGESAAGMYPVESVAMQQKVISRVETDPR-YTGIEA---VPEGDGHYADAVVRSASDLSRELGAKALVVMSASGASVLRASRQRPGIPILAVTPTAGVARALALQKNVYPVVLDPLKYG-ENIYRQVTEEARKKGLIDNEaDKLVVTTSMPFGN---PANVITV 516
                  5789*******************************86665.568******************************9887667889**********887.88**********************************************************************************98559*************************77...9**************************************************************************************************************************87.444444...3567899***************99**************************************************998888.999************9987626666666544333...3455555 PP

>> TIGR01588  citE: citrate (pro-3S)-lyase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   1.9e-05     0.039      52     119 ..      44     110 ..      26     116 .. 0.79
   2 ?   -2.7   0.0      0.25   5.1e+02      84     137 ..     236     289 ..     221     295 .. 0.66
   3 ?    1.5   0.1     0.014        28      13      42 ..     343     372 ..     328     437 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
    TIGR01588  52 lktvdykdtetvvrvngld.tpfgledlkavvkagvdvvrlpktetaeeileleklieeiekeiGrevG 119
                  l++  +k+   v +v +l    f ++ ++ +  agvdv rl   + ae+ +e  ++i e+e + Gr++G
  MMETSP1174-20130828|31895_1  44 LTEQRFKK--GVKQVATLGpKTFKKDMIEKLFLAGVDVFRLNLSHGAEDKVEPSEFIRELEVKYGRPIG 110
                  55555544..355566665146889999***************************************99 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.25
    TIGR01588  84 agvdvvrlpktetaeeileleklieeiekeiGrevGetklmaaiesalGvvnav 137
                   + d v l  ++ a++il+l kl+ +   ++  ++ +   +  +es + v + +
  MMETSP1174-20130828|31895_1 236 IDFDWVALSFVQKADDILQLRKLMGDHPGKVLAKIEKPSAIDNLESITDVCDGI 289
                  467788888888888888888888777666666666666666666666666555 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.014
    TIGR01588  13 npamikdatiyGadsvmfdledavslaekd 42 
                  + + i +a+  Gad+vm+  e a  +   +
  MMETSP1174-20130828|31895_1 343 ECSDIATAIFDGADAVMLSGESAAGMYPVE 372
                  455677788889999999999887665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 1778.55
//
Query:       MMETSP1174-20130828|31979_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|31987_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|32050_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.55
# Mc/sec: 244.78
//
Query:       MMETSP1174-20130828|32104_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 215.69
//
Query:       MMETSP1174-20130828|32100_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1106.68
//
Query:       MMETSP1174-20130828|32117_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.76
# Mc/sec: 670.37
//
Query:       MMETSP1174-20130828|32155_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 284.82
//
Query:       MMETSP1174-20130828|32176_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 327.84
//
Query:       MMETSP1174-20130828|32203_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1174-20130828|32200_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-17   57.9  83.1    3.8e-10   36.0  19.0    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    2.6e-13   46.4  61.4    6.4e-10   35.2  25.6    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0016   15.5  16.9       0.11    9.4   1.8    3.7  4  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
  ------ inclusion threshold ------
      0.054   10.3  50.7      0.058   10.2   6.7    3.5  3  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.37    8.8  57.0        1.8    6.5   2.4    7.1  7  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
       0.98    5.4  23.8       0.23    7.4   7.1    2.1  2  TIGR00833 actII: transport protein
        3.5    3.2  53.4        1.4    4.5   9.4    2.0  2  TIGR00618 sbcc: exonuclease SbcC
        5.2    3.2  54.7       0.82    5.8  28.5    2.1  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
        7.9    3.2  52.9        2.3    4.9   5.9    3.4  3  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0  19.0   8.2e-13   3.8e-10     742     942 ..       4     204 ..       1     205 [. 0.93
   2 !   35.9  33.1   8.9e-13   4.1e-10     251     531 ..     135     406 ..     134     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 8.2e-13
    TIGR02168 742 keveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae 942
                  ++ e+le ++++l  e+e++ +e e+ +e+ +++e+  +e  + +eel+a++ +++ee  +  ++ ++le e+++l  e+++ + + e+  ++ a+le++++el + ++ele+++ ++++e  ++ ++ e+le+ ++el + k++le+++ ++ ee  + +++ ++le +v++l +e+e+  ++++++ ++ ++le+ ++e
  MMETSP1174-20130828|32200_1   4 ANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKEELQAQVGKMTEENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMAEENGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEVNRLGAEVEKMSAENEKFAENNAKLEQSVNE 204
                  6789999999999999999999999999999999999999999999*************9999999**********999999999999999999999*******9999999****9999999999999999********99999999999999999999999999999999999999999999999999999999999876 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 8.9e-13
    TIGR02168 251 aeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlseli 531
                  +e++++el a  +ele+++ ++ +e+ +  ++ e+l++e+++l ae++++++e e+  e+ ++le++ +el +  +ele++  +  ee a+l+e+ ++++e++++++ae e++++   +le+++ el e  e l+++v el + +   ++e+ rl a++ ++++++er+++++++ +++ e++ +  +el +++e +++e +++++e+e+++e+l+e+e +l + ++    +++++a+ + +l+ +++  ++ ++l      l k ++k+a +   l ++i
  MMETSP1174-20130828|32200_1 135 LEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEVNRLGAEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHVGELGEVKEHLEEQVGELDRIKGMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELTTSVEATKAENAKMAAENEKFQENLQEMETQLGKHQE----LNDQMAKENLKLAKIRDGFQDIQDLF-----LNKMNEKMAAMDRSLLDKI 406
                  56777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888999999988889999999988888888999999999999999999999999999999988888888775544....44455555555555555555555543.....2222222333334444444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2  25.6   1.4e-12   6.4e-10     232     491 ..       5     256 ..       1     260 [. 0.60
   2 !   19.8  21.0     6e-08   2.8e-05     312     494 ..     210     396 ..     207     426 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.4e-12
    TIGR02169 232 elealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelseler 491
                  + e+le + +++  e++++ +e ek+ e+  +le+ ++e+ ++ eel++++ k++ee   ++ ++ e+l++e+++l  ++++   e e+ +e++ak+e+ +++l + ++ele ++ + + e  k  ++ ++l++  +el a  ee++++  ++ ee  +   + ekl+ e n l  e        +++++e ++  ++ +++e++++el + ++el++++ k +++  +l+e+ +k e+++ k+ +e ekl +  s+le+
  MMETSP1174-20130828|32200_1   5 NNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKEELQAQVGKMTEE-NGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMAEENGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEVNRLGAEV-------EKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEE 256
                  566777777888888888888888888888888888888888888888888887754.557777778888888888888888888888888888888888888888888888777777777776666655555555555555555555555555555555555555555555444444.......444444444444444444444444444444444444444444444444444444444444444444444444333 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 6e-08
    TIGR02169 312 aekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkl...eqlkedlekaekelrklkeelekleke.lselerela 494
                  +e e ++ ++ e++ak+ ++ +k +e++++ + e e+ +    kl+e++ el e+ e+l++++ e+d     +++e++ l  +++k+  e +  + +++ ++ e ++  +  ael   +e+ +++ a++++e e+ +e++++ e++l   ++l+++++k++ +l k+++ ++++++  l+++++++a
  MMETSP1174-20130828|32200_1 210 DELEAQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHVGELGEVKEHLEEQVGELDRIKGMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELTTSVEATKAENAKMAAENEKFQENLQEMETQLgkhQELNDQMAKENLKLAKIRDGFQDIQDLfLNKMNEKMA 396
                  5678889999999999999999999999999999999999*************************************************************************************************99999888763336677888888889999999999998862344444444 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.048        22     247     274 ..      27      54 ..       2      61 .. 0.70
   2 !    8.4   1.3    0.0005      0.23     162     274 ..      44     152 ..      21     159 .. 0.62
   3 !    9.4   1.8   0.00025      0.11     160     274 ..      91     215 ..      84     226 .. 0.76
   4 !    9.0   1.9   0.00033      0.15     154     265 ..     246     357 ..     236     374 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.048
    TIGR00996 247 rdllaenrpnLaqalanLasvltllvdy 274
                  ++ +aen+++L q +++L +v ++l+ +
  MMETSP1174-20130828|32200_1  27 NEKFAENNAKLEQSVNELGAVKEELQAQ 54 
                  3446666677777777777777777654 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0005
    TIGR00996 162 laGqgpqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdy 274
                  l    ++l++ + + ++   +++++ e++++ + +l+  ++ ++++++++++ +++l++ +  l + +d+L +   ++++++++ ++ +a+n+++L q +++L +v ++l+ +
  MMETSP1174-20130828|32200_1  44 LGAVKEELQAQVGKMTEENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEA---QVGKMAEE-NGKFAANNEKLEQSVNELGAVKEELEAQ 152
                  3333444555555555555555666666777777777777777777777777777777777777777766664...34444444.4445555699999999999998888765 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00025
    TIGR00996 160 ealaGqgpqlrelleglaqltaalnerd.......edigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqv...rdllaenrpnLaqalanLasvltllvdy 274
                  e +a + ++l +++++l ++ ++l ++        +++ ++ ++l + ++ l++ +++l++ + ++ +    +a++ ++L   + +l+a ++++   ++ +aen+++L q +++L +v ++l+ +
  MMETSP1174-20130828|32200_1  91 EKFAENNAKLEQSVNELGAVKDELEAQVgkmaeenGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEVNRLGAEVEKMsaeNEKFAENNAKLEQSVNELGAVKDELEAQ 215
                  55666666777777777777666666651111111567788999999999****************************99998888877766652225678889999*****9999999999876 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.00033
    TIGR00996 154 ilnalaealaGqgpqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLa 265
                   l +    l+ + ++l+e+ e l++ + +l++  + +++ +d+l++ +d ++++++++++ ++ +++  + +a++ ++L   ++a++a  a++++  ++ ++nL++   +L 
  MMETSP1174-20130828|32200_1 246 KLAESNSKLEEHVGELGEVKEHLEEQVGELDRIKGMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELTTSVEATKAENAKMAAENEKFQENLQEMETQLG 357
                  5667777888999999999999**********************************************************99999988777777766666666766666555 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.9   0.00064      0.29      80     237 ..       3     161 ..       1     166 [. 0.74
   2 ?   10.2   6.7   0.00013     0.058      79     173 ..     163     258 ..     159     270 .. 0.86
   3 ?    2.2  10.3     0.032        15      81     171 ..     291     385 ..     268     417 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00064
    TIGR01843  80 eadaaelesqvlaleaevarlraeanseeaiefpdillsae.d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleq 237
                   a+ ++le +v +l  ev++++ae   e+++e ++ l ++  +  av+e ++ q+ ++++++ +++a+ e+le ++++l  e+e++ a+ +++ ++   +++ ++ l   k++   +  ++ e + + a+ +++l+++  el ++k+el++   k++e + 
  MMETSP1174-20130828|32200_1   3 AANNEKLEGEVNRLGGEVEKMSAEN--EKFAENNAKLEQSVnElgAVKEELQAQVGKMTEENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMAEENGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEENG 161
                  6889999999999999999999994..44445555566655446788888888888888888888888888888888888888888888888888888888888888888777666666666666677777777777777777777777776666665555 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00013
    TIGR01843  79 veadaaelesqvlaleaevarlraeanseeaiefpdillsae.d..avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqql 173
                  + a+ ++le +v +l aev++++ae  +e+++e ++ l ++  +  av+  ++ q+ ++++++++l+++ +++e++++++ ae e+l++   +l++ +
  MMETSP1174-20130828|32200_1 163 FAANNEKLEGEVNRLGAEVEKMSAE--NEKFAENNAKLEQSVnElgAVKDELEAQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHV 258
                  67999********************..5555555655666664479******************************************9999998876 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.032
    TIGR01843  81 adaaelesqvlaleaevarlraeanseeaiefpdillsae.d..avaelvkeqeslfesrksalraql...esleaqikqleaeleglqaqlqalrq 171
                  a+++++ ++  ++ea+   ++ae ++   ++ +++l+++  +  a+++ ++ ++++f++++++++ ql   ++l+ q+++++ +l++++   q +++
  MMETSP1174-20130828|32200_1 291 AQVDKMSAENERFEANNKAMQAENEKF--ASSNAELTTSVeAtkAENAKMAAENEKFQENLQEMETQLgkhQELNDQMAKENLKLAKIRDGFQDIQD 385
                  444444444444444444444442222..22222233322223444444555555555555544444322234444444444444444444444444 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   1.3    0.0089       4.1      98     131 ..      19      52 ..       1      61 [. 0.39
   2 ?    5.7   2.2    0.0072       3.3      98     146 ..      54     102 ..      47     124 .. 0.55
   3 ?    4.6   2.8     0.015       6.9      91     133 ..     117     159 ..      92     176 .. 0.49
   4 ?    5.1   3.0     0.011       4.8      92     138 ..     181     227 ..     160     232 .. 0.57
   5 ?    4.0   5.0     0.024        11      95     146 ..     219     273 ..     205     295 .. 0.50
   6 ?    6.5   2.4     0.004       1.8      90     138 ..     284     332 ..     268     338 .. 0.77
   7 ?    3.0   4.0     0.048        22      97     141 ..     326     370 ..     317     402 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0089
    TIGR02894  98 eaeklrkekeklkeeleslqkrneeLekeleklk 131
                  e+ek+  e+ek+ e++++l++ ++eL   +e+l+
  MMETSP1174-20130828|32200_1  19 EVEKMSAENEKFAENNAKLEQSVNELGAVKEELQ 52 
                  2333333333333333333333333333333333 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0072
    TIGR02894  98 eaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlik 146
                  ++ k+ +e+ k+ +++e+l+ ++++L  e+ek+  +++  +e+ + l +
  MMETSP1174-20130828|32200_1  54 QVGKMTEENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQ 102
                  4455555555555555555555555555555555555555554444433 PP

  == domain 3    score: 4.6 bits;  conditional E-value: 0.015
    TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLekeleklkkk 133
                  ++ ++ ee+ k+  ++ekl++++++l   +eeLe ++ k++++
  MMETSP1174-20130828|32200_1 117 QVGKMAEENGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEE 159
                  2233333444444444444444444444444444444444444 PP

  == domain 4    score: 5.1 bits;  conditional E-value: 0.011
    TIGR02894  92 lketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvie 138
                  ++++  e+ek+ +++ kl++++++l   ++eLe ++ k+++++  ++
  MMETSP1174-20130828|32200_1 181 VEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMTEENAKLA 227
                  34444555555555555555555555555555555555555555554 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.024
    TIGR02894  95 tleeaeklrkekeklkeeleslqkrneeLekeleklkkkk...svieedyetlik 146
                  ++ee++kl ++++k++e+++++  +ne+L++ + kl+++      ++e  e  + 
  MMETSP1174-20130828|32200_1 219 MTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHVgelGEVKEHLEEQVG 273
                  3444445555555555555555555555555555554432000233333444444 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.004
    TIGR02894  90 qnlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvie 138
                  q++++   +++k+  e+e+++++++++q +ne++++ +++l++  ++++
  MMETSP1174-20130828|32200_1 284 QEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELTTSVEATK 332
                  4556666788899999999999999999999999999998888776655 PP

  == domain 7    score: 3.0 bits;  conditional E-value: 0.048
    TIGR02894  97 eeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedy 141
                  +++e+++ e+ k+ +e+e++q++ +e+e++l k ++ +  ++ + 
  MMETSP1174-20130828|32200_1 326 TSVEATKAENAKMAAENEKFQENLQEMETQLGKHQELNDQMAKEN 370
                  556666666666666666666666666666655544433333333 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.3     0.011       4.9     478     653 ..      29     211 ..       3     221 .. 0.41
   2 ?    7.4   7.1   0.00051      0.23     465     629 ..     235     401 ..     214     423 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.011
    TIGR00833 478 kldeatklleerldqllqdaeklaeaiaalr...........llqalmdllgenasqvvlavralqdalsklrdeaedvadiasPlrsalaaepeCrsdPvCrtareivqaaddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmresaagvadllneLsDyvktlgkvlge 653
                  k  e   +le+ +++l   +e+l+  + ++            +l+  ++ lg ++++++ +  ++ ++ +kl+++++++  + + l   +    e + + +     ++ q  +++ +v++ l  +vg++ +   +++ + +++ + +   + l++++ +m       a++ + L   v++lg+v++e
  MMETSP1174-20130828|32200_1  29 KFAENNAKLEQSVNELGAVKEELQAQVGKMTeengkfaanneKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMAEENGKFAA-NNEKLEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEV---NRLGAEVEKMSAENEKFAENNAKLEQSVNELGAVKDE 211
                  222222222222222222222222222222222222222222333444444444444444444444444444444444444444444444444433333222.22234444444444444444444444444444444444444332...2344445555555555555555666666666666665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00051
    TIGR00833 465 ktkvsfqagelgdkldeatklleerldqllqdaeklaeaiaalr....llqalmdllgenasqvvlavralqdalsklrdeaedvadiasPlrsalaaepeCrsdPvCrtar..eivqaaddvvevaakladevgdlartvatldsalkqvssllka.ldglrtklaqmres 629
                  + +v  qa+  ++kl e   +lee++ +l + +e+l e + +l+    ++q+ +d lg ++++++ +   ++ +   ++ e e++a     l   ++a++  +++ +    +  e +q +++ +    k ++  +++a+  ++l++  +++  + +  l+ ++ k+a m +s
  MMETSP1174-20130828|32200_1 235 E-NVNKQAA-ENEKLAESNSKLEEHVGELGEVKEHLEEQVGELDrikgMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELTTSVEATKAENAKMAAENEKfqENLQEMETQLG---KHQELNDQMAKENLKLAKIRDGFQDIQDLfLNKMNEKMAAMDRS 401
                  3.5667777.7999*****************************9444444555555667888888888889999999999999999999999999999999888887765442255555555444...55666778999999999999999988874378999999999776 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   9.4     0.003       1.4     711     853 ..       7     150 ..       4     178 .. 0.72
   2 ?    2.8  23.2    0.0098       4.4     672     865 ..     187     383 ..     157     411 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.003
    TIGR00618 711 etkveelsrefeelenasssakseleaeeealnqslkeleeqaktklkareeeqer.kseevvvelqtgaeleelkaelefkrreleesvqelkeleaeieqelpededileleqeklvqeeeqlks...kleekskklgeikrqlk 853
                  e+ ++e +r+  e+e+ s + + + ++++  l+qs++el +  k++l+a++ +  + + + +  ++ ++ e + l +e+e k  + +e++ e   ++++  +el   +d+le+++ k+++e  ++     kle+  + lg +k++l+
  MMETSP1174-20130828|32200_1   7 EKLEGEVNRLGGEVEKMS-AENEKFAENNAKLEQSVNELGA-VKEELQAQVGKMTEeNGKFAANNEKLEGEVNRLGGEVE-KMSAENEKFAENNAKLEQSVNELGAVKDELEAQVGKMAEENGKFAAnneKLEQSVNELGAVKEELE 150
                  556778899999999988.********************87.57889999998888345555667888899999**9977.455566777777777788888888899999999999998887775411144444455555555443 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0098
    TIGR00618 672 kkeklesrqaklkklqskkeqltyikeeLeqkqellreletkveelsrefeelenasssakseleaeeealnqslkeleeqaktklkareeeqer...kseevvvel..qtgaeleelkaelefkrreleesvqelkeleaeieqelp..ededil.eleqeklvqeeeqlkskleekskklgeikrqlkkyeetkkqleql 865
                  ++ek+++++akl++     ++l   k+eLe    ++ e++ k+ e++++fee  n   + + +l++ ++ l++ ++el e  k+ l +++ e  r     +++v  l  q ++  +e ++  e  +++++++ ++ +  +ae  + ++  + e+++  +e ek ++++++++++l + +++  ++ ++ +k++  +  +++ 
  MMETSP1174-20130828|32200_1 187 ENEKFAENNAKLEQSV---NELGAVKDELEAQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHVGELGE-VKEHLEEQVGELDRikgMMQQEVDRLgaQVDKMSAENER-FEANNKAMQAENEKFASSNAELTTSVEatKAENAKmAAENEKFQENLQEMETQLGKHQELNDQMAKENLKLAKIRDGFQDI 383
                  3344444444444443...66************************************9*************999998864.566777777666652111233322221133333333333.566677777777777777777666543112333331345666666666666666666666666666666665555555544 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.8     0.013         6     205     293 ..       7      98 ..       2     109 .. 0.67
   2 ?    5.8  28.5    0.0018      0.82     201     501 ..     104     393 ..      93     409 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.013
    TIGR03185 205 seieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslek...kfeseGgelaeereelerqqkeleaklkavraelrelaadll 293
                  +++e e++ l  e+++++ + e++a++ a+l++ ++e+   +e+l+    k+ +e g++a++ e+le +++ l  + ++++ae  ++a++ +
  MMETSP1174-20130828|32200_1   7 EKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNELGAVKEELQAqvgKMTEENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNA 98 
                  55666777777777777777777777777777777777666666665111446677777777777777777777777777777777776655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0018
    TIGR03185 201 eeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereelerqqkeleaklkavraelrelaadllPLlliknllssvkaqlrkeeqakqnqliqevleerdkellelLpklalpaelvkelaaelaelakka.ktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqk.edaeelervikladkvkktleeFreklle 501
                   ++  ++++e+ea+  +++e + k    +++++++ +el   +++le    k+ +e g++a++ e+le +++ l a+ ++++ae  ++a++ + L    n l +vk++l+   q  +       l+e +k++ e ++k a+++e ++e +++l+e + +  + + ++ ++    el +++ ++++   ++ +++ +++ e+e  e + ++++ + e         ++ +  +e + +v ++++e ++  ++ e+ +e+++e+ ++l + ++ + + a+e  +  k+ d  +++ + F +k+ e
  MMETSP1174-20130828|32200_1 104 VNELGAVKDELEAQVGKMAEENGKFAANNEKLEQSVNELGAVKEELEAQVGKMTEENGKFAANNEKLEGEVNRLGAEVEKMSAENEKFAENNAKLEQSVNELGAVKDELE--AQVGKMTEENAKLAENNKKFEENVNKQAAENEKLAESNSKLEEHVGELgEVKEHLEEQ--VGELDRIKGMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENE---------KFASSNAELTTSVEATKAENAKMAAENEKFQENLQEMETQLGKHQELNdQMAKENLKLAKIRDGFQDIQDLFLNKMNE 393
                  34445588999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999998888764..44444444556899*****************************998654555555444..46789999999999999999999999988888877777766333.........333444444444555555555555555555555555555553333333033344445556666666666666666655 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.9    0.0051       2.3      30     109 ..      25     107 ..       2     126 .. 0.56
   2 ?    3.3  10.2     0.015         7       6     130 ..     102     230 ..      99     238 .. 0.64
   3 ?    3.4  15.2     0.015       6.8      11     150 ..     226     367 ..     217     404 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0051
    TIGR00414  30 eklselddklkkllskieelqkkrnelskeigk...kkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl 109
                   + ++ +++  kl++ ++el + ++el+ ++gk   ++++ +++ e+l+ e+++l+ e+e+++ae ++  e+  ++  ++ +l
  MMETSP1174-20130828|32200_1  25 AENEKFAENNAKLEQSVNELGAVKEELQAQVGKmteENGKFAANNEKLEGEVNRLGGEVEKMSAENEKFAENNAKLEQSVNEL 107
                  33333444445566666667777777777777743233333444566888888888888888777665555555544444444 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.015
    TIGR00414   6 llrenlelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigk...kkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl...vae.svpvgkdeednlevkkeg 130
                  ++ ++l +vk++l+a+   +  +  k+ + ++   kl++ ++el + ++el+ ++gk   ++++ +++ e+l+ e+++l+ e+e+++ae ++  e+  ++  ++ +l    +e +  vgk  e+n ++ +  
  MMETSP1174-20130828|32200_1 102 QSVNELGAVKDELEAQVGKMAEENGKFAANNE---KLEQSVNELGAVKEELEAQVGKmteENGKFAANNEKLEGEVNRLGAEVEKMSAENEKFAENNAKLEQSVNELgavKDElEAQVGKMTEENAKLAENN 230
                  55678888999998888866666666666666...555555555555555555555532266666666788***********99999887766666555555565555424433567888888888655444 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.015
    TIGR00414  11 lelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeednl..evkkegek.ksfdfkpkdHvellekld 150
                  l++ ++k+++  + +  + ekl e ++kl ++  ++ e++++ +e+  e+++ k+  ++++++l ++++++  e e+ ea+ k++++e e+ +++ ++l+  sv  +k e++ +  e +k+ e+ ++++++  +H el +++ 
  MMETSP1174-20130828|32200_1 226 LAENNKKFEENVNKQAAENEKLAESNSKLEEHVGELGEVKEHLEEQVGELDRIKGMMQQEVDRLGAQVDKMSAENERFEANNKAMQAENEKFASSNAELT-TSVEATKAENAKMaaENEKFQENlQEMETQLGKHQELNDQMA 367
                  233344454444445556788888888888888888888888888888888888888888999****************************999999987.58888888888886677777777788888888***9988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       545  (0.132862); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.64u 0.19s 00:00:01.82 Elapsed: 00:00:00.93
# Mc/sec: 672.72
//
Query:       MMETSP1174-20130828|32221_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-11   41.2   0.0    5.7e-06   24.5   0.0    3.6  3  TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase
      1e-07   30.2   0.0     0.0001   20.4   0.0    3.0  3  TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
  ------ inclusion threshold ------
      0.059   10.4   0.0        0.1    9.6   0.0    1.3  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase


Domain annotation for each model (and alignments):
>> TIGR02799  thio_ybgC: tol-pal system-associated acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.2e-09   5.7e-06       1      83 [.      71     146 ..      71     181 .. 0.71
   2 !    9.8   0.0   0.00015       0.2      23      59 ..     279     314 ..     271     353 .. 0.83
   3 ?    2.5   0.0     0.026        35      96     123 ..     371     397 ..     364     400 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 4.2e-09
    TIGR02799   1 felpvrvYyeDtDagGvVYhanYlkflERaRtellralgveqealleeeglvfvvrkleldylkparlddaleveteveelkk 83 
                  ++++  v++eDtD   +V+  nYlk+++Ra  ++ r+ g++ + ll+ +      r  +++++++a l d+l++ +e+  +++
  MMETSP1174-20130828|32221_1  71 HSYTQEVFIEDTDCFKIVFNGNYLKYYDRALQDFGRQ-GCNPAPLLDIQ------RIDRMRFKSSAVLGDKLRIVSELIGFTE 146
                  567889************************9998886.55665555544......4456789999999999999988765544 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00015
    TIGR02799  23 YlkflERaRtellralgveqealleeeglvfvvrkle 59 
                   l+++ERaR+++l  +  +  + +e++g+  vv k++
  MMETSP1174-20130828|32221_1 279 SLRYFERARSDALGGAT-KLRECAEKDGISIVVSKID 314
                  59***********8776.6678999999999999875 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.026
    TIGR02799  96 dellveaevevacvdaeklrpralpeel 123
                    l+++aev  acvd+ +++ +++p+ +
  MMETSP1174-20130828|32221_1 371 SALVASAEVVCACVDN-EGKLAEFPDWV 397
                  567889*********7.79999998765 PP

>> TIGR00051  TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.6e-08    0.0001       6      74 ..      79     141 ..      75     175 .. 0.78
   2 !    6.0   0.0    0.0022       3.1      21      55 ..     280     314 ..     274     355 .. 0.77
   3 ?   -3.3   0.0       1.7   2.3e+03      96     114 ..     374     391 ..     370     394 .. 0.58

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.6e-08
    TIGR00051   6 yedtDaqgiVyhanYlkyleeartellralgFkqsvleeegvafvvvkikieYkkparlddvleirtel 74 
                   edtD   iV++ nYlky+++a  ++ r+   +   l  ++++       + +k +a+l+d l i +el
  MMETSP1174-20130828|32221_1  79 IEDTDCFKIVFNGNYLKYYDRALQDFGRQGCNPAPLLDIQRID------RMRFKSSAVLGDKLRIVSEL 141
                  68*********************99987655544444445443......45677777777777776665 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0022
    TIGR00051  21 lkyleeartellralgFkqsvleeegvafvvvkik 55 
                  l+y+e+ar++ l       +  e+ g+ +vv ki 
  MMETSP1174-20130828|32221_1 280 LRYFERARSDALGGATKLRECAEKDGISIVVSKID 314
                  89**********88887788889999***999985 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 1.7
    TIGR00051  96 lkaetklvvcvdkkkqkav 114
                  +  ++++  cvd ++ k +
  MMETSP1174-20130828|32221_1 374 VASAEVVCACVD-NEGKLA 391
                  455555556999.555655 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   7.6e-05       0.1     299     323 ..     301     325 ..     297     327 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7.6e-05
    TIGR01850 299 deetkrvvvvsaiDNLvKGaagqAv 323
                  +e+ +  +vvs iD L KG a+q v
  MMETSP1174-20130828|32221_1 301 AEKDGISIVVSKIDKLCKGKAAQSV 325
                  5677889****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1591.63
//
Query:       MMETSP1174-20130828|32233_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1099.91
//
Query:       MMETSP1174-20130828|32271_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 258.90
//
Query:       MMETSP1174-20130828|32278_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 225.66
//
Query:       MMETSP1174-20130828|32272_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1130.16
//
Query:       MMETSP1174-20130828|32289_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-152  504.9   0.0   2.5e-152  504.7   0.0    1.0  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
    6.8e-78  260.0   0.0    7.8e-78  259.8   0.0    1.0  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
    2.8e-65  218.4   0.0    3.5e-65  218.0   0.0    1.0  1  TIGR02089 TTC: tartrate dehydrogenase
    2.6e-55  186.1   0.0    5.9e-55  185.0   0.0    1.5  1  TIGR02924 ICDH_alpha: isocitrate dehydrogenase
      3e-52  175.6   0.0    8.8e-52  174.1   0.0    1.7  1  TIGR00175 mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
      8e-35  118.3   0.0    6.5e-26   88.9   0.0    2.1  2  TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.7   0.0  3.7e-155  2.5e-152       2     348 ..      15     367 ..      14     368 .. 0.97

  Alignments for each domain:
  == domain 1    score: 504.7 bits;  conditional E-value: 3.7e-155
    TIGR00169   2 iavLpGDgiGpevvaealkvLkavee.rfelklefeealiGGaaidatgePlpeetlkackeadavLlgavGGpkWdnlprdvrPekgLLklrkeldlfanLrPaklfksLeklsplkeeivkgvDlvvvreLtgGiYfGepkereeaee..ekkaldtekYtkeeieriarvafelarkrrkkvtsvDkanvLessrlWrktveeiakeyPdvelehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslss.kglalfepvhgsapdiagkgianpiaailsaalllryslnleeaaeaieaavkkvleegkrtedlaseat..tavstkeveee 348
                  +++LpGDgiGpe++a+ ++vL++++   ++++lef+ealiGGaa+datg+P+p++tl+ac+ ad+vLl+++GGpkWd+ pr++rPe+gLL++rk+++lfanLrPak+ ++L+++s+lk+e+++gvD++vvreL+g +YfG pk+++ + e  ek++++ + Y+++e++ria+vaf +a+krr +v+s+DkanvL++s+lWr+tv +++k+yPdv+l+h+y+DnaamqLv+ P+q+dv+v++nlfGDilsDeas+++GslGlLPsasl+  ++ ++fep+hgsapdiag + anp+a+ils a++l+y l  +++ae+ie+av kvl++g rt d+++e+    + ++ke++e+
  MMETSP1174-20130828|32289_1  15 VTLLPGDGIGPEITAATVAVLERLSSvTEGMELEFREALIGGAAVDATGDPFPAATLEACQTADSVLLACIGGPKWDACPREQRPESGLLAMRKSMNLFANLRPAKVLPQLVDASTLKKEVIEGVDIMVVRELVGDVYFGAPKGITTDPEtgEKTGFNNMIYSESEVKRIAKVAFDVAQKRRGEVCSIDKANVLDVSQLWRDTVIDVHKDYPDVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGTpDTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYDLARPDQAEIIENAVLKVLDDGFRTVDIYDEGHgqVQIGCKEMGEK 367
                  899***********************999*******************************************************************************************************************99876557999*****************************************************************************************************************97899***************************************************************98751145578888876 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8   0.0   1.1e-80   7.8e-78       1     310 [.      15     349 ..      15     369 .. 0.88

  Alignments for each domain:
  == domain 1    score: 259.8 bits;  conditional E-value: 1.1e-80
    TIGR02088   1 vavieGdGiGkevieaairiln....ekldlelelieleaGlealkkyGealseetlekikkadailfGavtetaa......psyksvivtlrkeldlyanvrpvkslekiedlea......knldivivrentedlyagfeie......isdtlaiairvitrkgserivkfalelakkrkrkvtivhkanvlkvtdglflevvreiakekg.vevedllvdsaaiklvkdPekfdvivttnvfGdilsdlaaalvGslGlaPsaniG..dkkalfePvhGsapdiaGkGianPlaailsvamlldy.lgekekaklveeavekilkekkvtpdl 310
                  v++++GdGiG+e+  a++ +l+     + ++ele+ e   G +a++ +G++++  tle+++ ad +l   ++ ++       +  +s ++ +rk ++l+an+rp+k l+++ d ++      +++di++vre   d+y g   +      ++++   +  +  +   +ri+k+a+++a+kr+  v  + kanvl v++ l+++ v ++ k+++ v ++ ++vd aa++lv+ P++fdviv  n+fGdilsd+a++lvGslGl Psa +G  d   +feP+hGsapdiaG   anPla+ils am+l+y l + ++a+++e+av k+l ++  t d+
  MMETSP1174-20130828|32289_1  15 VTLLPGDGIGPEITAATVAVLErlssVTEGMELEFREALIGGAAVDATGDPFPAATLEACQTADSVLLACIGGPKWdacpreQRPESGLLAMRKSMNLFANLRPAKVLPQLVDASTlkkeviEGVDIMVVRELVGDVYFGAPKGittdpeTGEKTGFNNMIYSESEVKRIAKVAFDVAQKRRGEVCSIDKANVLDVSQ-LWRDTVIDVHKDYPdVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGtpDTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYdLARPDQAEIIENAVLKVLDDGFRTVDI 349
                  56799****************9775334468999999999*******************************99876556555667899*********************766655445556689**************99755411111144455667778899999*****************************65.*************99******************************************************9666789********************************9445569****************999997 PP

>> TIGR02089  TTC: tartrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0   5.1e-68   3.5e-65       6     337 ..      15     351 ..      12     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 218.0 bits;  conditional E-value: 5.1e-68
    TIGR02089   6 iaaiPgdGiGkevvaaalkvleavakksGdlklefeefdwscdyykehGkmmPedgleklkkfdaiflGavGapa..evPdhislwGlllkirrefeqyinlrPakllpGv..ksplknrgpkdldllvvrenseGeysev..GGrifrgedeevaienaiftrkgverilrfafelaqkrrkkltsvtksnaikhsmvfwdevvkevakeypdvevdkqhidalaarlvlkPetldvivasnlfgdilsdlgaalagslGvapsaninpegkfPsmfePvhGsapdiagkgianPiaaiwtaalmleh.lGekeaaaklldalervtaegiktrdvgG 337
                  ++++PgdGiG+e++aa++ vle ++ +  +++lef e   + +    +G   P+  le  +  d+++l  +G p+    P +      ll +r+++++++nlrPak+lp +   s lk++  + +d++vvre     y ++  G    +++ e+ + +n i++   v+ri + af++aqkrr++++s+ k+n    s  +w + v +v k+ypdv+ +++++d  a +lv  P+++dviv+ nlfgdilsd ++ l+gslG+ psa + +  + P +feP+hGsapdiag + anP+a i ++a+ml++ l   + a  + +a+ +v+++g +t d+  
  MMETSP1174-20130828|32289_1  15 VTLLPGDGIGPEITAATVAVLERLSSVTEGMELEFREALIGGAAVDATGDPFPAATLEACQTADSVLLACIGGPKwdACPREQRPESGLLAMRKSMNLFANLRPAKVLPQLvdASTLKKEVIEGVDIMVVRELVGDVYFGApkGITTDPETGEKTGFNNMIYSESEVKRIAKVAFDVAQKRRGEVCSIDKANVLDVS-QLWRDTVIDVHKDYPDVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGT-PDTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYdLARPDQAEIIENAVLKVLDDGFRTVDIYD 351
                  6789***********************999******************************************9964479999999999*********************9844588999999************999988721444556677899*************************************99988.578888999************************************************************976.578*********************************965899999999999**************953 PP

>> TIGR02924  ICDH_alpha: isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.0   8.6e-58   5.9e-55       3     337 ..      15     372 ..      13     378 .. 0.82

  Alignments for each domain:
  == domain 1    score: 185.0 bits;  conditional E-value: 8.6e-58
    TIGR02924   3 itvayGdGiGPeimeavllilkeaea.....eieietieiGeklykkewssGisesswesikrtkvllkaPi......ttpqGgGhkslnvtlrkklglyanirPcvsyhpvietk......ypkldivivreneedlytGieyrltkdtyectk......vitrsgsekiiryafeyakknnrkkvtclikdnilkltdGifhkifdkiakeyPdiesehyivdiGaarvakkPekfdvivtenlyGdilsdvvaeisGsvGlaGsaniGe..eyamfeavhGsaPdiagknianPsGllnaaiqmlvy.igqkdiaqliynaflktledGvhtadiykekkskkkvgtkefaeavvenl 337
                  +t+  GdGiGPei  a++ +l++  +     e+e   + iG +  +          + e+ + +  +l a i        p+ +   s  +++rk+++l+an+rP++    +++         + +di++vre   d+y G    +t+d  + +k      + ++s  ++i + af+ a+k  r  v  + k n+l ++  +++ +  ++ k+yPd+   h+ vd  a ++   P++fdviv  nl+Gdilsd ++ + Gs+Gl  sa +G      +fe +hGsaPdiag + anP  ++ ++ +ml y + + d a++i+na lk l+dG  t diy+e + + ++g ke+ e+v + +
  MMETSP1174-20130828|32289_1  15 VTLLPGDGIGPEITAATVAVLERLSSvtegmELEFREALIGGAAVDAT-GDPFPAATLEACQTADSVLLACIggpkwdACPREQRPESGLLAMRKSMNLFANLRPAKVLPQLVDAStlkkevIEGVDIMVVRELVGDVYFGAPKGITTDPETGEKtgfnnmIYSESEVKRIAKVAFDVAQK-RRGEVCSIDKANVLDVSQ-LWRDTVIDVHKDYPDVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGTpdTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYdLARPDQAEIIENAVLKVLDDGFRTVDIYDEGHGQVQIGCKEMGEKVADAV 372
                  78889*********9988888776551111133333444555544332.33456778999999888888877122222345566678999****************99877776541111115679********************99988776644444467999999*********987.6999***********986.89999999**************************************************************7225679*******************9998888888877699*******************************************98865 PP

>> TIGR00175  mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.1   0.0   1.3e-54   8.8e-52       4     317 ..      13     349 ..      10     359 .. 0.79

  Alignments for each domain:
  == domain 1    score: 174.1 bits;  conditional E-value: 1.3e-54
    TIGR00175   4 ltvtlipGdGiGpeiskavkeifka.....akvPiefeeidvs.ieteekksealeeavesi...kknkvaLkG..aletpiekgehkslnvalrkeldlyanvvhiksleGl.......ktrhedvdlviirenteGeysglehevv....pGvveslk..vitkekseriakyafeyarkngrkkvtavhkanimklaDGLflevakevakkypdikleelivDntclqlvskPeqfdvlvmpnlYGnilsnlaaglvgGaGlvpganvGr.dyvvfeegvrntakdiagkdianPtalllssvlmLnh.lglkeyadrikkavletikegkvrtkDl 317
                   tvtl+pGdGiGpei++a   +++      + + +ef e  +    ++ +    +  ++e+    +   +a  G  ++++   ++  +s  +a+rk+++l+an++++k l+ l       k  +e vd++++re     y g    +      G    +   +  +++ +riak af+ a+k  r +v ++ kan++ ++  L+++++ +v+k+ypd++l++++vDn+++qlv  P+qfdv+v+ nl+G+ils+ a+ lvg +Gl+p+a++G+ d   ++e  +++a+diag d+anP a++ls+++mL++ l   + a+ i++avl+++++g  rt D+
  MMETSP1174-20130828|32289_1  13 STVTLLPGDGIGPEITAATVAVLERlssvtEGMELEFREALIGgAAVDATGDPFPAATLEACqtaDSVLLACIGgpKWDACPREQRPESGLLAMRKSMNLFANLRPAKVLPQLvdastlkKEVIEGVDIMVVRELVGDVYFGAPKGITtdpeTGEKTGFNnmIYSESEVKRIAKVAFDVAQK-RRGEVCSIDKANVLDVSQ-LWRDTVIDVHKDYPDVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGTpDTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYdLARPDQAEIIENAVLKVLDDG-FRTVDI 349
                  69**************999988875211114577899999888666666644445555555520044444444412244444555578889*****************9987622222212234789*******998888765544431111455555442267888899*********986.699************996.**********************************************************************84556788889**************************965999**************9887.567676 PP

>> TIGR00183  prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   4.2e-10   2.9e-07      29     163 ..      15     155 ..       6     184 .. 0.79
   2 !   88.9   0.0   9.5e-29   6.5e-26     246     414 ..     189     370 ..     169     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 4.2e-10
    TIGR00183  29 ipyieGdGiGvdivpaaikvldaavekaykgekkiawfevyaGekayelygeeeylpedtldaikeyk....vaikGpl..ttpvGgGirslnvalrqeldlyvclrpvryykgv..pspvkep..ekvdlvifrentediyaGi 163
                  +  + GdGiG +i++a++ vl+   + +  g  ++ + e  +G  a++ +g  + +p+ tl+a +        +i Gp   + p  +   s  +a+r+ ++l+++lrp + ++     s +k+   e vd+++ re   d+y G 
  MMETSP1174-20130828|32289_1  15 VTLLPGDGIGPEITAATVAVLERLSSVTE-G-MELEFREALIGGAAVDATG--DPFPAATLEACQTADsvllACIGGPKwdACPREQRPESGLLAMRKSMNLFANLRPAKVLPQLvdASTLKKEviEGVDIMVVRELVGDVYFGA 155
                  55688****************98655444.4.57999**************..788******9987542111468899733456666667889*****************997642256666533489**************985 PP

  == domain 2    score: 88.9 bits;  conditional E-value: 9.5e-29
    TIGR00183 246 yelakkefgeev.itkalwdklknp.........eeGkkivvkdriadallqqiltrpdeydviatmnlnGdylsdalaalvGGlGiapGanig..devaifeathGtapkyaGldkvnpgsvilsgvlllef.lGwkeaadlivkalekaiaskevtydlarlmdgakevkcsefaeaive 414
                  +++a+k  ge + i+ka+   +++          ++  ++ +  +  d+   q++  p+++dvi + nl Gd lsd ++ lvG lG+ p a +g  d+ ++fe++hG+ap  aG d  np ++ils++++l++ l   + a++i +a+ k +++   t d+    +g+ +++c+e++e++ +
  MMETSP1174-20130828|32289_1 189 FDVAQKRRGEVCsIDKANVLDVSQLwrdtvidvhKDYPDVTLSHMYVDNAAMQLVRWPKQFDVIVCGNLFGDILSDEASMLVGSLGLLPSASLGtpDTPGVFEPIHGSAPDIAGSDTANPLAMILSTAMMLQYdLARPDQAEIIENAVLKVLDDGFRTVDIYDEGHGQVQIGCKEMGEKVAD 370
                  5555555554443334444444333332333232333389999999**********************************************98557889********************************988999***************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1223.31
//
Query:       MMETSP1174-20130828|32300_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|32307_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 409.62
//
Query:       MMETSP1174-20130828|32328_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.7    3.6  10.9        2.2    5.0   1.9    2.0  2  TIGR04142 PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family


Domain annotation for each model (and alignments):
>> TIGR04142  PCisTranLspir: putative peptidyl-prolyl cis-trans isomerase, LIC12922 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.9   0.00053       2.2      61      92 ..       3      34 ..       1      40 [. 0.87
   2 ?    3.4   1.6    0.0016       6.6      57      87 ..      38      68 ..      33      81 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00053
    TIGR04142 61 aeeesiqvnekrveaeiekrmevqgisdlkqf 92
                 a ee ++v+ +r  ae++ r+e+  ++  ++ 
  MMETSP1174-20130828|32328_1  3 AAEEKVRVEAERAAAEVKTRVEAERVAAEEKV 34
                 889********************999887765 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0016
    TIGR04142 57 vdvvaeeesiqvnekrveaeiekrmevqgis 87
                  + va ee + v+ +r  ae + r+e+   +
  MMETSP1174-20130828|32328_1 38 AERVAAEEKVHVEAERAAAEEKGRVEAERAA 68
                 5789**********************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 287.67
//
Query:       MMETSP1174-20130828|32419_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|32437_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-224  742.6   7.0   7.4e-224  742.3   4.9    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   1.8e-171  569.5   3.0   2.2e-171  569.2   2.1    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.2e-12   45.4   0.0    1.2e-12   45.4   0.0    2.0  3  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    8.1e-11   39.7   0.7    1.4e-09   35.6   0.0    2.7  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    3.3e-05   20.4   0.0    7.5e-05   19.3   0.0    1.5  2  TIGR01312 XylB: xylulokinase
    0.00015   18.8   1.0      0.043   10.7   0.0    3.2  3  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  742.3   4.9  1.1e-226  7.4e-224       3     590 ..       9     609 ..       7     614 .. 0.94

  Alignments for each domain:
  == domain 1    score: 742.3 bits;  conditional E-value: 1.1e-226
    TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.....evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge.....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag..dkleeeekekiekaveelkealkeedveek..ikakteelekalekl 590
                  +GidLGtt s+v v++ ++ ++ian +G+rttPs+vaf+++ erl+G++ak+q+ +n+ nt++ +krliGrk++   v++++k+ p++v +        ev+++ e+k+++pee+s+++L k+k+ aeay+G++v++av+tvPayfnd+qrqatkdaG+iaGl+vlriinePtaaa+ayGldk+ +++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd++++d+++ efk++   d++ ++ al+rl+ a e+ak  Ls+++++++++  +       ++++ ++tra+fe++ +d +++++epv+k+l+d+k s++ ++ev+lvGGstriP+vq ++ +++g kep ks+nPde+va Ga +q+++l+g+     ++d+lLldvtPLsLg+et Ggv+t+li+rntt+P+kksq+fst +dnqp v i+v+ Ger++++d + lg+f+L+gipp+PrG+pqievtfdidanGil+v+a +k+tgkeq+itit+ ++ ls eeiermv eae++++ed+ ++ ++ea+n+++++ y++++t+++++   kl++ +ke i+ ++ee  + l+ ++++ek   +ak++ele  ++ +
  MMETSP1174-20130828|32437_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTddAVQSDMKHWPFTVKSGPAgkpiiEVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLLEFKRKFKKDMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSLFE----GIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAYGATVQAAILSGQdqsekLQDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAIEKSTGKEQKITITNdKGRLSAEEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTISDEKlaSKLSDGDKETITGKIEETIQWLDANQTAEKeeYEAKQKELEAIVNPV 609
                  8**************************************99.******************************986579***********9876542323455556689**********************************************************************************************************************************************************************9999887653....47899************************************************************98*************************977788899******************************************************************************************************************972578********************************************9976336899************9999988887766334667777777666555 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  569.2   2.1  3.2e-174  2.2e-171       2     565 ..       9     591 ..       8     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 569.2 bits;  conditional E-value: 3.2e-174
    TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgem....vrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLaknkrke...dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadk..dLlseeelkaikaaleklekaleeddaea 565
                  vGiDlGtt+s v + +++++e++ +++g+ + ps v ++e  +  +G++ak+++a + +nt+  +kRl+Gr  +d  v++ +++ p+++++++ +     v+++ ++++ +P evs+ +L k+k+ ae  +gk++k+av+tvPAYF+d qrqatkdA+ +aglnvlR++nePtaAA+AYGldk   e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD+++++++l    +k + + + ++   + l +a ++ak++L++++++++e+    eg d++ +++r+++e++  ++ +k +e+v+++lrd++ +++ ++evvlvGGstr+p+v+ +++++F+ kep ++++Pde vA GA++qa +L++++++e   dllLlDv+PLsLGlet GG++  +i Rntt+P++k+q F ty D+q ++ i+v  GeR + +dc  L++F+L gippm+ G+ +i+vtf++Da+G+l+v+a ek+tg+e+ki++ +  g Ls eeie+m+ ++ ++ +eD ++R++ e+k   e+   +++++++++k    ls  ++++i+ ++e+  + l+ +++++
  MMETSP1174-20130828|32437_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNET-ERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTDdaVQSDMKHWPFTVKSGPAGKpiieVEFRGEKKTFAPEEVSSMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKkGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDHFLlefkRKFKKDMKGNQRALRRLRTACERAKRTLSASTQAHLEIDSlfEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFFGgKEPCKSINPDEAVAYGATVQAAILSGQDQSEklqDLLLLDVTPLSLGLETAGGVMTALIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERSMTRDCNLLGKFNLDGIPPMPRGQPQIEVTFDIDANGILNVNAIEKSTGKEQKITITNDKGrLSAEEIERMVDEAERYKAEDEATRVRIEAKNSLENYCYSMKSTISDEKlaSKLSDGDKETITGKIEETIQWLDANQTAE 591
                  8**************************************99.99***************************87654489999999****9988776111145555666889***********************************************************************977999**********************************************999665444444466677777888888999******9999988886446******************************************************************6489***********************88776546689****************************************************************************************************************987644**************************************99999976542245777788888777776665555444333 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3   2.1e+02       4      20 ..       8      24 ..       6      84 .. 0.59
   2 !   45.4   0.0   1.7e-15   1.2e-12     100     304 ..     144     356 ..     120     383 .. 0.77
   3 ?   -3.5   0.1       1.3   8.8e+02     203     255 ..     512     567 ..     510     590 .. 0.65

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
    TIGR00904  4 dlgidlGtantlvyvkg 20
                  +gidlGt+   v v +
  MMETSP1174-20130828|32437_1  8 SVGIDLGTTYSCVGVWQ 24
                 68999999988764433 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 1.7e-15
    TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveep.tgsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyi....rrky.nlliGerta.ekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsket 304
                  + +++vP+   + +r+a k++   aG +   +i+ep aaai  +l  +   +  ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ ++++     +rk+ + + G++ a  ++++    a+ +  + +++  ++   l +G+  + +++  +  +   +  ++ +e v+++l +++       v + +vl GG + +  ++ +ls+  
  MMETSP1174-20130828|32437_1 144 NAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGDeKNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVDHFllefKRKFkKDMKGNQRAlRRLRTACERAKRTL-SASTQAHLEIDSLFEGIDFNSTITRARFEDMNMDYFRKCMEPVEKVLRDSKCSKN--AV-HEVVLVGGSTRIPKVQGMLSDFF 356
                  379******************************************998651566899************994599776662233689******9999874333355551569999988356888887777764.45555566667899*********************************99876544..34.56999999999999999888754 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 1.3
    TIGR00904 203 ertaekikieiGsayaeen.deeeklevkGrdlvtGl..prtleldskevlealke 255
                     ae+i   +  a+  +  de +++ ++ ++ ++      + ++++++++  l++
  MMETSP1174-20130828|32437_1 512 RLSAEEIERMVDEAERYKAeDEATRVRIEAKNSLENYcySMKSTISDEKLASKLSD 567
                  55788888888888765443788888888888887651144556777776666654 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   2.1e-12   1.4e-09      43     143 ..     124     230 ..     120     269 .. 0.88
   2 ?    0.8   0.0     0.086        59     188     218 ..     326     356 ..     291     370 .. 0.73
   3 ?   -2.1   0.0      0.67   4.6e+02     157     182 ..     589     613 ..     581     615 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2.1e-12
    TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql......kngavvdvGGGttGisilkkGkviysadeatGGthl 143
                  + ++ ++k+ +e  +G ++++a ++vP   ++++ +++ +    aGl+vl++++ePtaaa +  l      kn  + d+GGGt  +s+l   + i+    ++G thl
  MMETSP1174-20130828|32437_1 124 SMVLIKMKEIAEAYIGKDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLdkkgdeKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 230
                  5677899****************************************************999888333322356789**************999**99999999997 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.086
    TIGR02529 188 khiekqkvkdlylvGGassfsefedvfekel 218
                  +   k+ v+++ lvGG++ +++++ +++  +
  MMETSP1174-20130828|32437_1 326 SKCSKNAVHEVVLVGGSTRIPKVQGMLSDFF 356
                  45678899***********999998887665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.67
    TIGR02529 157 eaeekkkekkkeeevfsvvkPvvekm 182
                  +ae+   e  k++e+ ++v+Pv++ +
  MMETSP1174-20130828|32437_1 589 TAEKEEYE-AKQKELEAIVNPVLQNL 613
                  44544444.667799999****9986 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.81   5.6e+02       1      26 [.       9      35 ..       9      41 .. 0.69
   2 !   19.3   0.0   1.1e-07   7.5e-05     379     449 ..     319     392 ..     282     402 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.81
    TIGR01312  1 lGiDlgTs.svKallvdekgeviasgs 26
                 +GiDlgT+ s+  +  +++ e+ia+ +
  MMETSP1174-20130828|32437_1  9 VGIDLGTTySCVGVWQNDRVEIIANDQ 35
                 7*****982444455558888888766 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.1e-07
    TIGR01312 379 sldilkelk..glkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialgekdlveecs 449
                    ++l++ k     ++e++l+GG ++ + ++ +l d +g +  +++   +e++a+Ga ++Aai +g+ d+ e+++
  MMETSP1174-20130828|32437_1 319 VEKVLRDSKcsKNAVHEVVLVGGSTRIPKVQGMLSDFFGGKEPCKSinPDEAVAYGATVQAAILSGQ-DQSEKLQ 392
                  44555554411346899*********************97655554449**************9985.4555554 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   6.3e-05     0.043     165     214 ..     163     213 ..     141     231 .. 0.84
   2 !    4.9   0.0    0.0037       2.5     279     338 ..     298     356 ..     269     369 .. 0.76
   3 ?   -1.4   0.2      0.31   2.1e+02      81     116 ..     497     533 ..     479     541 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.3e-05
    TIGR01174 165 kaveraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavyt 214
                  +a + agl+v +i+ ++ A+a+a  L++   e  v++ d+Gggt d+++ t
  MMETSP1174-20130828|32437_1 163 DAGAIAGLNVLRIINEPTAAAIAYgLDKKGDEKNVLIFDLGGGTFDVSLLT 213
                  5556699***************966999888889************99876 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0037
    TIGR01174 279 elskkelaeiieaRveEileivkqkelkksglkeelaagivltGGaaqlkgikelaekvf 338
                  ++++++  ++     +  +e v+ k l++s+ +++  + +vl GG +++  ++ + ++ f
  MMETSP1174-20130828|32437_1 298 TITRARFEDMNMDYFRKCMEPVE-KVLRDSKCSKNAVHEVVLVGGSTRIPKVQGMLSDFF 356
                  55555555555555566677786.999999996666666***********9999988877 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.31
    TIGR01174  81 ksqnskgvvaikdk.evtqediervleaakavalped 116
                  ++ +++ +  ++dk  + +e+ier++++a+  + +++
  MMETSP1174-20130828|32437_1 497 STGKEQKITITNDKgRLSAEEIERMVDEAERYKAEDE 533
                  4445566666666679999*******99988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1985.84
//
Query:       MMETSP1174-20130828|32476_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|32499_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1174-20130828|32532_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|32547_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-115  382.1   0.6   8.5e-115  381.9   0.4    1.0  1  TIGR00069 hisD: histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00069  hisD: histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.9   0.4  2.1e-118  8.5e-115       2     393 .]      51     439 ..      50     439 .. 0.96

  Alignments for each domain:
  == domain 1    score: 381.9 bits;  conditional E-value: 2.1e-118
    TIGR00069   2 keiiedvrkeGdeAlleytekfdkv.kleslrvseeeleealeavdeelkealelaaeniekfhekqlpesvev.eteegvllgqkvrplervglYvPgGkaaypStvlmtavpAkvAgvkeivvvtPpkkdgkvnpavlaaakllgvdevykvGGaqaiaalayGtetvpkvdkivGPGniyVtaAKklvfgevgidmiaGPsEvlviadesanpelvaaDllsqaEHdedaqailvtts.eelaekveeeveeqleelerkeiaekslekngaiilvddleealelsneyApEHLelqtkdpeellkkiknaGsvflGeytpealgdyvaGpnhvLPTsgtArfasglsvedFlkrisvqelske.aleelaeaveklaeaEgLeaHaeavevR 393
                  ++ i+d ++eG+ Al++y+ekf ++ + e l + ++e+++a e++++e k+ le++ +++++f+ +q+++ +e+    +g  +gq v p e +g+Y PgG++++pS+v+mta +A+ Agv+++vv++P       +p +laaa++ g+d ++++GGaqaiaala G+  vpk+d++vGPGn++VtaAK l++g++gidm+aGPsEvlviad++++pe+vaaDll+qaEHd  a+ ilv+t+  + + k++e++++ql+ l+++ +a ++++  g  + ++++eeal+l+n++ApEHLe+ t+++ e++k  +++G +f+G+ ++e lgdy  Gpnh+LPT+gtAr+++glsv +Fl+  ++++++   a +   +++++la++EgLe Ha+a+e+R
  MMETSP1174-20130828|32547_1  51 RKCIADLKAEGEVALRRYAEKFGDIaEGEPLVLGKDEMRAAFESLSAEDKACLETTCARVTAFAVAQRASITEItAPIPGGEAGQSVSPCEVAGCYAPGGRYPLPSSVIMTAATARAAGVHTVVVASPR-----PQPVTLAAAHVSGADLLLAAGGAQAIAALALGV-GVPKADVVVGPGNKWVTAAKSLISGSCGIDMLAGPSEVLVIADATSDPETVAADLLAQAEHDIVARPILVSTDgLDTILKCNEALTRQLAVLPTRGVACEAVR-GGFAVACESVEEALALTNRVAPEHLEVLTANHDEVAKGCTHYGGLFIGHGAAEVLGDYGIGPNHTLPTGGTARYTGGLSVFSFLRIRTWMRIDDPvASQPAVRDAVHLARLEGLEGHARAAEQR 439
                  57899*****************88768899*************************************999765515689*************************************************9.....59*******************************.9*********************************************************************8862699**************************.79999***************************************************************************************876155667899****************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 1552.61
//
Query:       MMETSP1174-20130828|32573_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   29.9   2.7    6.1e-08   29.6   1.9    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    8.2e-05   18.5   0.8    0.00016   17.5   0.2    1.4  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0026   15.4   2.7     0.0044   14.6   1.6    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   1.9   4.4e-11   6.1e-08     131     256 ..      98     224 ..      53     250 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 4.4e-11
    TIGR00990 131 kekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldlt.assliddfrdeqsaqaverllkkfaeskakeiletkpe 256
                  k k  +     d+  ai  ++kal+++   + ++nra c   +      v+d  aa +++ d  kal+ r +a+  lg ++ a  dl+ a+s+  d   +++ + v  ++k  a +k + +l++ ++
  MMETSP1174-20130828|32573_1  98 KSKASELKAAGDYAGAISEFTKALECQASALTFANRADCLLRMKRPLAAVADCDAAYAINCDSAKALKIRGKAHRYLGNWQLAHKDLSkAMSIDYDPDCQEMVNFVTAKMKDIAAAKTQARLDDERK 224
                  455555555669***************************************************************************945566667777778899999*********9999977655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   1.2e-07   0.00016      66     155 ..     104     191 ..     100     195 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.2e-07
    TIGR02917  66 yleqGdaaaAekeLrkAlslgyskeqvlplLarayllqgkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaia 155
                  + ++Gd+a+A  e++kAl+  +s+  +    a  +l ++ +  +++   +++   + ++a++l +rg+A+  lg+ ++A k+l++A +i+
  MMETSP1174-20130828|32573_1 104 LKAAGDYAGAISEFTKALECQASAL-TFANRADCLLRMKRPLAAVADCDAAY-AINCDSAKALKIRGKAHRYLGNWQLAHKDLSKAMSID 191
                  5689**************9998764.55567999999999999999999999.7888999999**********************99987 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.6   3.2e-06    0.0044      62     133 ..     104     174 ..      97     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
    TIGR02552  62 lqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                  l+a+++y++Ai  ++ a+ ++++ +  +  +a+cll ++++  A ++ ++a +i  ++++  +++ +a  +l
  MMETSP1174-20130828|32573_1 104 LKAAGDYAGAISEFTKALECQAS-ALTFANRADCLLRMKRPLAAVADCDAAYAINCDSAKALKIRGKAHRYL 174
                  67899***************975.6778899****************************9999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 1290.19
//
Query:       MMETSP1174-20130828|32586_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.8   0.0       0.39    8.6   0.0    2.1  2  TIGR01624 LRP1_Cterm: LRP1 C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01624  LRP1_Cterm: LRP1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0016       6.6      34      43 ..      13      22 ..       3      23 .. 0.88
   2 !    8.6   0.0   9.4e-05      0.39      19      43 ..      39      62 ..      26      63 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0016
    TIGR01624 34 VkIgGHvFkG 43
                  kI  H+FkG
  MMETSP1174-20130828|32586_1 13 LKICNHLFKG 22
                 6899*****9 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 9.4e-05
    TIGR01624 19 aiddgeeaeyaYQatVkIgGHvFkG 43
                  id  ++ e+a     kI  H+FkG
  MMETSP1174-20130828|32586_1 39 CIDMRKK-EVAMERALKICNHLFKG 62
                 5666675.9999999*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|32625_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|32676_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1174-20130828|32775_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1174-20130828|32784_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 213.21
//
Query:       MMETSP1174-20130828|32803_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1685.40
//
Query:       MMETSP1174-20130828|32831_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.2   5.8        5.6    3.1   4.0    1.8  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
        3.1    4.5   7.8        1.2    5.9   0.0    1.9  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.0    0.0027       5.6     279     321 ..       7      53 .]       2      53 .] 0.72

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0027
    TIGR01642 279 nlkavekl....vnsktvldsedklyignLPldlkddqvkeLLesFG 321
                  n++  e++     n  ++  ++ kl++ +L +d ++    +L  +FG
  MMETSP1174-20130828|32831_1   7 NMDHRERSrsreRNGGGSDGGNPKLFVRGLNYDTQESEFEQLFSKFG 53 
                  555555555443444455556779*************9999999998 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.9     0.017        35      23      38 ..       5      20 ..       2      28 .. 0.58
   2 ?    5.9   0.0   0.00057       1.2     218     244 ..      27      53 .]      21      53 .] 0.91

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.017
    TIGR01622 23 rdksrersRdrsrdRe 38
                 r++  +r+R+rsr+R+
  MMETSP1174-20130828|32831_1  5 RNNMDHRERSRSRERN 20
                 4445555555555554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00057
    TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFG 244
                  ++ kL+v +l ++  E e  q+F  FG
  MMETSP1174-20130828|32831_1  27 GNPKLFVRGLNYDTQESEFEQLFSKFG 53 
                  5679**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 249.84
//
Query:       MMETSP1174-20130828|32838_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|32857_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 609.18
//
Query:       MMETSP1174-20130828|32889_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.015   12.0   0.0    1.1  1  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-06     0.015     343     383 ..       9      51 ..       3      58 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-06
    TIGR00387 343 eeekeelerveelleei.lelavelgG.tisgEHGiGvekaee 383
                  e+ +e+ ++v+ ++  + + ++velgG  +s+EHG   +k++e
  MMETSP1174-20130828|32889_1   9 ERRPEDGSKVQTATVPLeIAACVELGGlKLSAEHGTTSKKHHE 51 
                  566677777777665443679******66*******9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 216.32
//
Query:       MMETSP1174-20130828|32896_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    7.4   2.8       0.67    6.4   0.2    2.0  2  TIGR01893 aa-his-dipept: Xaa-His dipeptidase


Domain annotation for each model (and alignments):
>> TIGR01893  aa-his-dipept: Xaa-His dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1    0.0047        19     102     121 ..      22      41 ..      20      51 .. 0.88
   2 ?    6.4   0.2   0.00016      0.67     101     120 ..      61      80 ..      44      83 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0047
    TIGR01893 102 rgttlGaDnGigvAmalail 121
                  +g tlGa+ Gi v +al++l
  MMETSP1174-20130828|32896_1  22 DGKTLGAEIGIPVGCALGML 41 
                  578**********9999876 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00016
    TIGR01893 101 argttlGaDnGigvAmalai 120
                   +gt lG D+Gi v +al+i
  MMETSP1174-20130828|32896_1  61 LDGTPLGMDDGIPVGIALGI 80 
                  479************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|32935_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 303.09
//
Query:       MMETSP1174-20130828|32964_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-73  243.8   0.0    3.2e-73  243.5   0.0    1.1  1  TIGR00021 rpiA: ribose 5-phosphate isomerase A


Domain annotation for each model (and alignments):
>> TIGR00021  rpiA: ribose 5-phosphate isomerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.5   0.0   7.9e-77   3.2e-73       2     217 ..      56     284 ..      54     285 .. 0.93

  Alignments for each domain:
  == domain 1    score: 243.5 bits;  conditional E-value: 7.9e-77
    TIGR00021   2 kraaaeaaaelvedgmvvGlGtGsTvkylieelgervkkesl.kikgvptSkkteelakelgiplssldevkeldlaiDGADevdeklqliKGgGgallrEKivasaskrfiviaDesKlvkklg.kfplPvevvpfaakavleklek....egleaelrka.ek......agpvvTdngnyilDvkfekiiedpealeeelksipGvvetGlfidmadkvivgtkdgv 217
                  k a ++a+ ++ve+gm vGlGtGsT+++++e+lg+++++++l +++g+ptS +t+e+a+elgipl +lde + ld+aiDGADevd++l+l+KGgGgallrEK+v+ ++k+fivi+De+Kl + lg  fp+Pve+ pf++ ++l+++ +    +g+++ lr + ++      ++p vTdngnyi+D+ fe+ ++d+    +elk+++Gvve+G+fi+++++vi++ +dg+
  MMETSP1174-20130828|32964_1  56 KMAGYKAIDDYVESGMLVGLGTGSTAAFAVERLGQKLASGELkDVVGIPTSVRTKEQAEELGIPLITLDERSDLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVMAKKFIVIVDETKLCDGLGpGFPVPVEITPFCHGHTLRTIGElpslAGCKPVLRLGsSSnnlpdgDEPAVTDNGNYIVDLFFEEPVKDAVLAGSELKNTVGVVEHGFFIGITTAVIIAGSDGI 284
                  5556677789*****************************7777**********************************************************************************99*****************8887788899******87421122323789*****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 950.32
//
Query:       MMETSP1174-20130828|32972_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      214  (0.0521697); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1174-20130828|32985_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 190.65
//
Query:       MMETSP1174-20130828|32994_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   18.0   0.9    0.00071   17.3   0.6    1.2  1  TIGR00964 secE_bact: preprotein translocase, SecE subunit


Domain annotation for each model (and alignments):
>> TIGR00964  secE_bact: preprotein translocase, SecE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6   1.7e-07   0.00071       6      53 ..     167     215 ..     166     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.7e-07
    TIGR00964   6 kevkaEikKVvWPsrkellrytlvVivfvlflslfvflvD.yvigklls 53 
                  +  ++E++ ++WP+  ++ ++ l+V  ++++ sl++  +D ++i+ l +
  MMETSP1174-20130828|32994_1 167 QALFTEVNQIEWPTPIKVGQNLLLVYSTMIVASLVISTYDtFLIQFLKQ 215
                  56799***********************************777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 1104.80
//
Query:       MMETSP1174-20130828|33010_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|33012_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1032.34
//
Query:       MMETSP1174-20130828|33059_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1174-20130828|33060_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    5.9   8.0        1.6    7.0   2.6    2.0  2  TIGR03893 lant_SP_1948: type 2 lantibiotic, SP_1948 family


Domain annotation for each model (and alignments):
>> TIGR03893  lant_SP_1948: type 2 lantibiotic, SP_1948 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.026   1.1e+02      21      30 ..      15      24 ..      11      29 .. 0.87
   2 ?    7.0   2.6    0.0004       1.6      22      43 ..      34      56 ..      34      68 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.026
    TIGR03893 21 iqGsgdvnar 30
                 i G+gd +ar
  MMETSP1174-20130828|33060_1 15 IDGGGDTDAR 24
                 78*9***998 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0004
    TIGR03893 22 qGsgdvnarttpicvvv.aaavs 43
                 qG gd++a  t+++ ++  a+++
  MMETSP1174-20130828|33060_1 34 QGTGDAAATATATATATtTATAT 56
                 899***99954444444023333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|33062_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1174-20130828|33054_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-135  448.8   0.0   5.4e-135  448.5   0.0    1.0  1  TIGR00032 argG: argininosuccinate synthase
     0.0022   15.4   0.0     0.0038   14.7   0.0    1.3  1  TIGR00268 TIGR00268: TIGR00268 family protein
     0.0028   15.1   0.0     0.0048   14.3   0.0    1.4  1  TIGR00364 TIGR00364: queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> TIGR00032  argG: argininosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.5   0.0  3.9e-138  5.4e-135       1     389 [.      18     421 ..      18     426 .. 0.96

  Alignments for each domain:
  == domain 1    score: 448.5 bits;  conditional E-value: 3.9e-138
    TIGR00032   1 kvvlaysGGlDtsvalklleekgaeviavtvdvGqpeedldaieekalklGaekayviDareefvkdylfaaiqanavyegkYllstaLaRpliakklvevakkegaeavahGctgKGnDqvRFelsilllnpdlkviaPvreleli.....ReeeieyaaekGievpvekekaysiDenllgrsiEageLEdpsteppediyelvkdpiektedepevveieFekGvPvaln.....gesle.pvelilkaneiagkhGvGriDivEdRiiglKsReiYEapalllLikAhkdLetlvltkdvlefkeiveekyseliYkGlwfdplaealdalikktqervtGtvrvklfkGnaivigrkseyslYdeelvsfekdk...e..fdqkdaiGfikirglqikvy 389
                  kvvlaysGGlDts +l+++ ekg++vi +++dvGq  ed++a++ kalk+Ga k+yv D re+fv +y+f +i+ana+ye++Yll+t++aRp i ++++e+a+kega+ vahG+tgKGnDqvRFe+  ++l++ +  iaP+r+ e+      R+++++yaae+ i+v ++ + +ys+Den+++ s E+g LEdp++ p ++++++++dp++++ +e  ++ ieF kG+P ++      ++ ++  +el+  +ne+ag+hG+Gr+D+vE+R +g+KsR++YE+pa ++L++Ah d+e  +++++v++ ++  + ++++l Y+G+wf p++e+++  ++  q++v+G v ++l+kGn iv+gr+s++ lY+++l+s++ d+      +++ da+Gfi+i++ + k y
  MMETSP1174-20130828|33054_1  18 KVVLAYSGGLDTSTILLWMIEKGFDVICYCADVGQVGEDFEAVKAKALKCGAIKMYVEDLREDFVLNYVFESIKANAIYESRYLLGTSIARPCIVQRQIEIAQKEGAKFVAHGATGKGNDQVRFEMNAQALDATITTIAPWRDPEFLtrfkgRTDLLAYAAEHNIPVDATPKAPYSVDENIFHTSFESGMLEDPMVSPLKEMWKMTVDPKDAP-EEGAKLRIEFTKGIPTKVIchsdgEKVVTgGLELFTYLNEVAGAHGIGRLDMVENRFVGIKSRGCYETPAGAVLREAHLDIEGITMDREVMRIRDGLSAEFARLCYNGFWFAPEMEMVKHSMEFAQRNVNGAVELELYKGNIIVLGRESPNPLYSADLASMDIDDggaMfdYNPADAQGFIRINSTRLKAY 421
                  8*************************************************************************************************************************************************99*************************************************************9999.88899***********997788865556689***********************************************************************************************************************************96533332256899******998887776 PP

>> TIGR00268  TIGR00268: TIGR00268 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-06    0.0038      13      65 ..      17      68 ..       5      99 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.8e-06
    TIGR00268 13 kkvliaysGGvdssllaavlsdaglevlaitvvspslspreledakkiakeig 65
                  kv++aysGG+d+s++   + + g +v++  +   ++  +++e  k++a + g
  MMETSP1174-20130828|33054_1 17 PKVVLAYSGGLDTSTILLWMIEKGFDVICYCADVGQVG-EDFEAVKAKALKCG 68
                 49**************9999999******999886654.56666666666655 PP

>> TIGR00364  TIGR00364: queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-06    0.0048       2      46 ..      20      65 ..      19      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.5e-06
    TIGR00364  2 vvvlSGGlDSttvllialkegeeveavtFdYgqr.hskElevAkki 46
                 v+ +SGGlD +t+ll+++++g +v++   d gq   + E  +Ak +
  MMETSP1174-20130828|33054_1 20 VLAYSGGLDTSTILLWMIEKGFDVICYCADVGQVgEDFEAVKAKAL 65
                 6789**********************99999998777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1267.10
//
Query:       MMETSP1174-20130828|33064_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|33067_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 591.82
//
Query:       MMETSP1174-20130828|33065_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-08   31.4   0.1    2.3e-07   29.0   0.0    1.9  2  TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD
    0.00028   19.0   0.0    0.00056   18.1   0.0    1.4  1  TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein


Domain annotation for each model (and alignments):
>> TIGR03367  queuosine_QueD: queuosine biosynthesis protein QueD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.1e-10   2.3e-07      26      90 ..      68     136 ..      49     138 .. 0.92
   2 ?    0.1   0.0      0.12   2.4e+02      29      50 ..     161     182 ..     144     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.1e-10
    TIGR03367  26 GHtykvevtvsgevldeagmvvdfselkkivkevvdklDHallndvlele....nptaEnlakliyeel 90 
                  G t  v v+ +g+ l  +++++d  e +++++ev++ +DH+ l ++ e++    n+t E++a+ +y +l
  MMETSP1174-20130828|33065_1  68 GCTAVVDVKFHGNSLGPEDILIDICEAQRMLREVMECYDHKNLDELSEFQdpcrNTTVEVMAHAVYIQL 136
                  5667899**************************************999888888**********99887 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.12
    TIGR03367  29 ykvevtvsgevldeagmvvdfs 50 
                  +k+e+tv+ +  + ag++  f+
  MMETSP1174-20130828|33065_1 161 HKLEITVKESDVAYAGFIAPFT 182
                  6899999999999999999997 PP

>> TIGR00039  6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.7e-07   0.00056      31      97 ..      71     139 ..      65     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.7e-07
    TIGR00039  31 YkvevevsGeedkktgmvidfsdLKkivkevideklDHkllnddkee...levstsenvavyifdelkev 97 
                   +v+v+ +G++   + ++id+ +  ++++ev++   DHk+l++ +e      + t e++a  ++ +l e 
  MMETSP1174-20130828|33065_1  71 AVVDVKFHGNSLGPEDILIDICEAQRMLREVMEC-YDHKNLDELSEFqdpCRNTTVEVMAHAVYIQLVER 139
                  579****************************999.******98876566777777777777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.21s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 779.56
//
Query:       MMETSP1174-20130828|33069_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1174-20130828|33072_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|33071_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 407.28
//
Query:       MMETSP1174-20130828|33074_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 753.62
//
Query:       MMETSP1174-20130828|33076_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1174-20130828|33078_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 831.53
//
Query:       MMETSP1174-20130828|33073_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.6e-104  345.2   0.0     1e-103  345.0   0.0    1.0  1  TIGR00233 trpS: tryptophan--tRNA ligase
    2.7e-06   24.5   0.0    1.5e-05   22.1   0.0    1.8  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.0   0.0  4.9e-107    1e-103       1     328 []      49     382 ..      49     382 .. 0.97

  Alignments for each domain:
  == domain 1    score: 345.0 bits;  conditional E-value: 4.9e-107
    TIGR00233   1 kkkrvltGiqpsGklhlGnylgairtkveqqeevelfiqvaDlhaitvkkltdeealrkaveelvadilAvGlDpekttiflqsevpehselavllskkvtlgelkritqfkdks..qeenvsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkk.......vfklPelliskffarlmglqd..kKMSkSdpn..saIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgkllygelKkalievlqeflkelqekreevaee..eldkileagakkaretaektlakvkkalGl 328
                  kk+rvl+G+qpsG+l+lGnylgair++v++q+++e++++v+Dlhait+++  d++ l+ +++ ++a +lA G+Dpek+ +f+qs+v++hsel +ll++++ +++l+r++q+k+ks  q env++Gl++ypvl+aAdiLlyqa +VPvgeDq qhleltRd+ +rfn+ + k        f+ Pe++i k++ar+m+l+d   KMSkS +n  s I+L+d+p+ ik Kikk++td +  +  ++ ++p+ ++ll+iy++ s  +       e++ +e+s +  +g +K  l+e+++e l +lq++++ +  +  +l+++l +gak a+ +a++tl++++ a+G+
  MMETSP1174-20130828|33073_1  49 KKTRVLSGVQPSGSLTLGNYLGAIRQWVDLQDDYETYFCVVDLHAITAPH--DPKKLKEETLSAAAIYLAAGVDPEKSRVFIQSHVKAHSELCWLLNTQTPMNWLERMIQYKEKSskQGENVNVGLFDYPVLMAADILLYQAGKVPVGEDQRQHLELTRDICRRFNDIYAKkkkrhekPFREPEAMIVKEGARVMSLTDgtSKMSKSAENenSRINLLDPPDIIKRKIKKCKTDAFDGLEWDNPDRPEAANLLTIYQATSGLSR------EAVLAEVSDMR-WGAFKPILTEAVVEHLRPLQTRYADLMVDksYLNSVLIDGAKDANLVADQTLRNARSAMGF 382
                  689***********************************************..***************************************************************999999************************************************8777888888*****************************9999*************************************************999......99999999999.***********************99766556*****************************8 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   7.3e-09   1.5e-05      33     271 ..      48     280 ..      36     286 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.3e-09
    TIGR00234  33 neklklylGvdPtaqslHlGhlv.plkkLrdfqqaGhevvvligdatalig..dpsgkkevrkvleeeevqenaesikkqlarfldfdkgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleenglslsefiYpllQayDfvaLdkddlqlGGsDQwgNilagidLirrnlps.k.......kqfgltvpLltkadG.ekmGkseg.gavsldesspydfyqkvintpdelvkkilklftf 271
                  ++k ++  Gv P++ sl lG+++  ++   d+q+  +e ++ + d++a     dp+  ke+   l+             +++   ++d++k  +   s+     ++  ++     +  ++rm++ ++ ss++ en + +  f Yp+l a D+   ++ ++ +G  DQ+  +   +d+ rr++ + +       k+f  +  +++k +G  +m+++ g  ++s +  +  ++ +++++ pd +++ki+k  t+
  MMETSP1174-20130828|33073_1  48 KKKTRVLSGVQPSG-SLTLGNYLgAIRQWVDLQDD-YETYFCVVDLHAITAphDPKKLKEE--TLS-----------AAAIYLAAGVDPEKSRVFIQSHVKAHSELCWLLNTQTPMNWLERMIQYKEKSSKQGEN-VNVGLFDYPVLMAADILLYQAGKVPVG-EDQRQHLELTRDICRRFNDIyAkkkkrheKPFREPEAMIVK-EGaRVMSLTDGtSKMSKSA-ENENSRINLLDPPDIIKRKIKKCKTD 280
                  46788999999999.99999998568999999987.7888888899997531133333332..333...........2233333333344445555555555555555566666667799**************9.***************98777779*995.9************999876553455566699999999***9.898****988725677776.69999****************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1559.87
//
Query:       MMETSP1174-20130828|33082_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-30  104.2   0.3    1.9e-30  103.5   0.2    1.3  1  TIGR01120 rpiB: ribose 5-phosphate isomerase B
    1.5e-30  103.9   0.3    2.1e-30  103.4   0.2    1.1  1  TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerases, RpiB/LacA/LacB family
    2.9e-27   93.2   1.6      4e-27   92.7   1.1    1.1  1  TIGR02133 RPI_actino: ribose 5-phosphate isomerase
    4.2e-16   57.0   0.2    5.9e-16   56.5   0.1    1.2  1  TIGR01119 lacB: galactose-6-phosphate isomerase, LacB subunit
    8.9e-14   49.7   0.5    1.3e-13   49.1   0.4    1.1  1  TIGR01118 lacA: galactose-6-phosphate isomerase, LacA subunit
  ------ inclusion threshold ------
      0.042   11.7   0.4      0.088   10.6   0.3    1.6  1  TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component


Domain annotation for each model (and alignments):
>> TIGR01120  rpiB: ribose 5-phosphate isomerase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.2   2.8e-33   1.9e-30       1     127 [.      49     170 ..      49     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 2.8e-33
    TIGR01120   1 kiaiGsdhaGlilkekikeflkekgvkvidvgtlasertdypdyakevvravaegeaerGilicgtGiGlsiaankfkGiraalcseeymaklsrlhndanvlalGervvGvelaksiveafletef 127
                  ++ +G+d  G  lk+++k++l+ kgv+v d+gt      +y + a +v+++v++++  +G+l cgtG+G+ i ankf G+ aa c +e +a+ sr  n+anvlalG +v+    a +i +afle ef
  MMETSP1174-20130828|33082_1  49 RVLLGADGFGEDLKNHVKAHLVSKGVEVEDFGTE-----KYYEAAAKVAKEVRSDREAKGMLFCGTGMGVGIIANKFSGVFAATCENEAAARCSRAVNNANVLALGGKVTSPADATAIADAFLEQEF 170
                  5899***************************874.....688999*******************************************************************************999 PP

>> TIGR00689  rpiB_lacA_lacB: sugar-phosphate isomerases, RpiB/LacA/LacB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.2   3.1e-33   2.1e-30       1     127 [.      50     170 ..      50     173 .. 0.98

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 3.1e-33
    TIGR00689   1 iaiasDHaGlelkekikefleekkleviDlgtleldesvdYPdyakkvaekvveneaslGilicgtGiGvsiaAnkvkgiraalvvdektAklareHndanvlalgervvgvelalkivdaflttef 127
                  +++++D  G  lk+++k++l +k++ev D gt++      Y + a kva++v+++++  G+l cgtG+Gv i Ank++g+ aa + +e +A+ +r+ n+anvlalg +v++++ a++i dafl+ ef
  MMETSP1174-20130828|33082_1  50 VLLGADGFGEDLKNHVKAHLVSKGVEVEDFGTEK------YYEAAAKVAKEVRSDREAKGMLFCGTGMGVGIIANKFSGVFAATCENEAAARCSRAVNNANVLALGGKVTSPADATAIADAFLEQEF 170
                  689*****************************99......8899********************************************************************************999 PP

>> TIGR02133  RPI_actino: ribose 5-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   1.1   5.9e-30     4e-27       2     131 ..      49     172 ..      48     175 .. 0.97

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 5.9e-30
    TIGR02133   2 rvvlgsDdaGfelkealkedLkaedaevvdvGveiaDeeddYPkvaiaaaekvardeadlalvigGsGnGeqiaankvkGiraalawdeetaelarlsnnanvlaiGarvvgleearrlveefLeeefse 131
                  rv lg+D  G +lk+++k +L +++ ev d G+e      +Y + a + a++v  d+++++++ +G+G G+ i ank  G+ aa+  +e +a+ +r+ nnanvla+G +v +   a++++++fLe+ef e
  MMETSP1174-20130828|33082_1  49 RVLLGADGFGEDLKNHVKAHLVSKGVEVEDFGTE------KYYEAAAKVAKEVRSDREAKGMLFCGTGMGVGIIANKFSGVFAATCENEAAARCSRAVNNANVLALGGKVTSPADATAIADAFLEQEFIE 172
                  89******************************99......8899999********************************************************************************966 PP

>> TIGR01119  lacB: galactose-6-phosphate isomerase, LacB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   8.6e-19   5.9e-16       2     128 ..      49     170 ..      48     175 .. 0.94

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 8.6e-19
    TIGR01119   2 kiaigcdhivtdvkmevseflkskgyevldvgtydftrthypifgkkvgeavvsgeadlgvcicgtgvginnavnkvpgvrsalvrdmtsalyakeelnanvigfggaiigelllldiidafieaey 128
                  ++ +g+d    d k +v  +l skg ev d+gt  +          kv ++v s +   g+ +cgtg+g+   +nk  gv +a   + ++a  ++   nanv+++gg+++     + i daf+e e+
  MMETSP1174-20130828|33082_1  49 RVLLGADGFGEDLKNHVKAHLVSKGVEVEDFGTEKYYE-----AAAKVAKEVRSDREAKGMLFCGTGMGVGIIANKFSGVFAATCENEAAARCSRAVNNANVLALGGKVTSPADATAIADAFLEQEF 170
                  578999**************************976544.....46799***************************************************************************9987 PP

>> TIGR01118  lacA: galactose-6-phosphate isomerase, LacA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.4   1.9e-16   1.3e-13       3     125 ..      50     169 ..      49     173 .. 0.95

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 1.9e-16
    TIGR01118   3 iiigsdeagkrlkdviksflvdnkyevvdvterkeldfvdatlavakevqkdeknlgividaygagsfmvatkikgmiaaevsdersaymtrghnnarlitlgaeivgdelaknivkafvegk 125
                  +++g+d  g+ lk+ +k++lv ++ ev d        + +a+  vakev++d +  g+     g g  ++a k  g+ aa   +e +a  +r  nna +++lg ++     a  i+ af+e  
  MMETSP1174-20130828|33082_1  50 VLLGADGFGEDLKNHVKAHLVSKGVEVEDFGT---EKYYEAAAKVAKEVRSDREAKGMLFCGTGMGVGIIANKFSGVFAATCENEAAARCSRAVNNANVLALGGKVTSPADATAIADAFLEQE 169
                  689************************99977...5688999*****************************************************************************9976 PP

>> TIGR00853  pts-lac: PTS system, lactose/cellobiose family IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00013     0.088      10      66 ..      61     122 ..      53     158 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR00853  10 lkekvaanldtaka...d.ailalaevaee.aeasnimeetnvlvlCaaGgssslLvnklnk 66 
                  lk++v a l  +     d  + +  e+a + a+      e + +++C+ G+  ++++nk+  
  MMETSP1174-20130828|33082_1  61 LKNHVKAHLVSKGVeveDfGTEKYYEAAAKvAKEVRSDREAKGMLFCGTGMGVGIIANKFSG 122
                  55555555555544222212222333333345555666678899**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 707.33
//
Query:       MMETSP1174-20130828|33080_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.55
# Mc/sec: 775.14
//
Query:       MMETSP1174-20130828|33075_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   15.6   0.6     0.0045   14.7   0.4    1.5  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ
      0.005   14.2   0.0     0.0062   13.9   0.0    1.1  1  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   2.2e-06    0.0045      39     138 ..     150     242 ..     127     245 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-06
    TIGR03042  39 qrqveeieaakdrldeLkslvakkdWvetrnlihGPlgevrremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayl 138
                  ++ v  i+ +k   + + +++akk+W e+ + +   l ++rr m+ l ++       e k+ a  + +++e l  A + +d+ +a +ay++  a +da++
  MMETSP1174-20130828|33075_1 150 KTDVTVINGQKY-SKPISESIAKKQWGEVITQLDRYLYNLRRAMNKLSKT------PESKAAAVTFYKAIETLNGACTTKDQAAASAAYAASLAAFDAWK 242
                  555555444443.344788999*******999999999999999988775......4555667789999****************************985 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     3e-06    0.0062     259     330 ..     169     243 ..     124     246 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3e-06
    TIGR02410 259 lkldpatgeleqv.RwntsDRasldtlaks..skeevpkfYkAleklskiikdpenevevklkpGevlifDnwRv 330
                  + ++++   ++q+ R+  + R +++ l+k   sk+    fYkA+e+l+  ++ ++        + ++  fD w+v
  MMETSP1174-20130828|33075_1 169 IAKKQWGEVITQLdRYLYNLRRAMNKLSKTpeSKAAAVTFYKAIETLNGACTTKDQAAASAAYAASLAAFDAWKV 243
                  23333444456655898889999999987666999999***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 758.17
//
Query:       MMETSP1174-20130828|33083_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1051.02
//
Query:       MMETSP1174-20130828|33089_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1174-20130828|33085_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-137  456.7   1.7   1.5e-137  456.5   1.2    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.9e-75  251.7   0.3      4e-75  251.3   0.2    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.9e-74  248.1   2.4    1.6e-73  246.1   1.7    1.6  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.3e-57  193.6   1.1    1.8e-57  193.1   0.8    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    2.8e-06   24.2   0.3    0.00019   18.2   0.0    2.8  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      2e-05   21.2   0.0    2.5e-05   20.8   0.0    1.1  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    6.7e-05   19.8   0.2      0.089    9.5   0.0    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    8.5e-05   19.5   0.0    0.00016   18.7   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0012   15.1   0.0     0.0024   14.2   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
      0.002   15.0   0.0      0.003   14.4   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0028   14.1   0.3     0.0068   12.8   0.0    1.6  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0052   13.7   0.0     0.0081   13.1   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0098   11.9   0.1       0.15    8.0   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
      0.014   13.1   0.0       0.39    8.4   0.0    2.4  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.035   11.4   0.0      0.078   10.3   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.5   1.2  5.3e-140  1.5e-137      26     363 ..     101     438 ..      68     439 .. 0.94

  Alignments for each domain:
  == domain 1    score: 456.5 bits;  conditional E-value: 5.3e-140
    TIGR01242  26 ereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                  e + +  r+++e lr  p+ v+ + e++dd++++v ss Gp++ v v +f++++ l+pG  v l+++ ++iv +l ++ dp+v  ++ve+ p  sy diGGle q+ ei+eavelpl +pel+ee+Gi+ppkGv+lyG pGtGktllakava++t atf+rvvgsel++ky+G+G +lvre+f++a + +psi+fideida+++kr ds ++G re+qrt+l+ll +ldGfd rg+vkvi atn+++ ldpal+rpGr+dr ie plpd++ +++i++iht++m l  dvd+e +    +  sGad+ka++teaG+ a+re+r kvt edf+ka ek 
  MMETSP1174-20130828|33085_1 101 EEKDKEERTKMEDLRGSPMSVGNLEEMIDDNHAIVSSSVGPEYYVSVFSFVNQDLLEPGCSVLLHNKVMSIVGILSDDSDPMVSVMKVEKAPLESYADIGGLESQIMEIKEAVELPLAHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGSKRYDSGSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFNIHTSRMTLGADVDIEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTHEDFVKAKEKA 438
                  2234567899************************************************************************************************************************************************************************************************************************************************************************************************************************************9995 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.2   1.5e-77     4e-75      52     298 ..     193     440 ..     174     446 .. 0.96

  Alignments for each domain:
  == domain 1    score: 251.3 bits;  conditional E-value: 1.5e-77
    TIGR01241  52 kvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                    +++d+ G++ +  e++e v+  L +p+ ++++G k PkGv+l+G+PGtGktLlakava + +  f+++ Gs++++ + G G + vr+lf  a  ++P+i+fiDeiDavG+kr  + +gg  e ++t+  lL ++DGf+++ +v v+ atn+ + LD+aL+rPGr Dr++   +Pd+k ++ i+++h+ +++l ++vd++   ++   +sGad++ ++ ea lla r+++ +vt +++ +a+++ ++
  MMETSP1174-20130828|33085_1 193 LESYADIGGLESQIMEIKEAVELpLAHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGSKRYDSGSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFNIHTSRMTLGADVDIEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTHEDFVKAKEKALY 440
                  45799*****************879****************************************************************************************************************************************************************************************************************************886 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.1   1.7   5.8e-76   1.6e-73     448     685 ..     192     431 ..     182     444 .. 0.67

  Alignments for each domain:
  == domain 1    score: 246.1 bits;  conditional E-value: 5.8e-76
    TIGR01243 448 pnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadls..eavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekl 685
                  p   + diggle    e++eave pl ++e++e +gi+ppkgv+l+g pgtgktllakava+++ a f+ v g e++ k++g+  k +re+fr a + +p+i+f+deida+  +r  + s  ++  +r + +ll +ldg++e  dv vi atn+ + ldpal+rpgr+dr i  p pd +++  if iht +++l+ dvd+e +    +  +gadi+av+ ea l+alre  + v++e +
  MMETSP1174-20130828|33085_1 192 PLESYADIGGLESQIMEIKEAVELPLAHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGSKRYDSGSggTREIQRTMLELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFNIHTSRMTLGADVDIEVFVMAKDELSGADIKAVCTEAGLLALRERRMKVTHEDF 431
                  334566777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777755433114455666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766665555544 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.8   6.5e-60   1.8e-57     109     379 ..     121     382 ..     104     441 .. 0.90

  Alignments for each domain:
  == domain 1    score: 193.1 bits;  conditional E-value: 6.5e-60
    TIGR03689 109 ivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkse...veelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr...GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylt 379
                  + +l+e++dd++a+v++ ++ e+ v++ + + +  l++G s+l+ +k+   +  ++  +   v+ + +e +P  +yadiGGl+sqi +i++avelP+ h+ely+e ++kpPkGv+lyG PG+Gktl+akavan           +++ fl + G el++ky+G+  + +r +f      a + +P +vf+de+d++   r   GsG + +++ t++  ll +ldG ++  +v vi a+n+ + +dPa++rPGr+d ki    Pd ++ + i++ + +
  MMETSP1174-20130828|33085_1 121 VGNLEEMIDDNHAIVSSSVGPEYYVSVFSFVNQDLLEPGCSVLLHNKVMSIVGILSDDSdpmVSVMKVEKAPLESYADIGGLESQIMEIKEAVELPLAHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQ----------TSATFLRVVGSELIQKYLGDGPKLVRELFR----VADDHSPSIVFIDEIDAVGSKRydsGSGGTREIQRTML-ELLNQLDGFDERGDVKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRRIFNIHTS 382
                  5689*******************************************998888887655233677789****************************************************************95..........4569*************************5....78999*************887776799999***99987.79****************************************************998854 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     7e-07   0.00019      38      65 ..     229     256 ..     214     264 .. 0.88
   2 ?    0.6   0.0      0.16        45     118     178 ..     280     348 ..     276     361 .. 0.64
   3 ?    1.4   0.0     0.092        25     250     275 ..     413     438 ..     407     448 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7e-07
    TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkele 65 
                  + p+ v++yG++GtGKt+ +k+v ++ +
  MMETSP1174-20130828|33085_1 229 KPPKGVILYGEPGTGKTLLAKAVANQTS 256
                  57999*******************9976 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.16
    TIGR02928 118 eelvkeleeredsliivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkf 178
                  +el+++ + ++ s+ + +DEiD + +k  d+          ++ eL+    +g  e   v vi  +n++++
  MMETSP1174-20130828|33085_1 280 RELFRVADDHSPSI-VFIDEIDAVGSKRYDSgsggtreiqrTMLELLNQL-DGFDERGDVKVIMATNKIES 348
                  56666666666665.557****9965555546777777777444444442.33333356777777777765 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.092
    TIGR02928 250 eageiAeeegsekvteehvekAqeki 275
                  eag +A +e + kvt e+  kA+ek+
  MMETSP1174-20130828|33085_1 413 EAGLLALRERRMKVTHEDFVKAKEKA 438
                  79*********************997 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.3e-08   2.5e-05     285     407 ..     203     322 ..     185     366 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 9.3e-08
    TIGR03922 285 keqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgakddfGleaidtLL 407
                   +q+  +k++ve+ l+  e   ++  +  k ++l G PGtGkt +A++va++ +        +   v  ++li +y+g+  +   el   a +    ++F+DE+ a+ +kr++++     e+  t+L
  MMETSP1174-20130828|33085_1 203 ESQIMEIKEAVELPLAHPELYEEIGIKpPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRVVGSELIQKYLGDGPKLVRELFRVADDhspSIVFIDEIDAVGSKRYDSGSGGTREIQRTML 322
                  566677777777776665554444433147799******************9764.......45568899***********9999998777663337**********99988776554444433333 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00077      0.21      47      82 ..     231     266 ..     217     287 .. 0.82
   2 !    9.5   0.0   0.00032     0.089     248     284 ..     291     326 ..     278     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00077
    TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatk 82 
                  Pk +++ G  G Gkt +a+ +a  + a f++v  + 
  MMETSP1174-20130828|33085_1 231 PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 266
                  9*****************************997765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00032
    TIGR00390 248 sGiifideidkiakkgessgadvsreGvqrdllPive 284
                    i+fideid +  k   sg+  +re +qr +l +++
  MMETSP1174-20130828|33085_1 291 PSIVFIDEIDAVGSKRYDSGSGGTRE-IQRTMLELLN 326
                  579*************99**999999.99*9998865 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.7e-07   0.00016      32      94 ..     233     303 ..     208     308 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 5.7e-07
    TIGR00635  32 hvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal......eegdvlfiDeihrls 94 
                   v+lyG PG Gkt lak +a++  ++ l+++ +  ++k  gD   ++ +l      ++ +++fiDei ++ 
  MMETSP1174-20130828|33085_1 233 GVILYGEPGTGKTLLAKAVANQTSATfLRVVGSELIQKYlGDGPKLVRELfrvaddHSPSIVFIDEIDAVG 303
                  589*****************9987552899999999985356555544442222223457*******9875 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.6e-06    0.0024     356     434 ..     234     304 ..     227     327 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.6e-06
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkv.ktenP.lillDEiDKlgs 434
                  ++l+G PG GKt lak++A+ +  +f+r+ +G     +e+    + Y+G  P k++  l +v + ++P ++++DEiD +gs
  MMETSP1174-20130828|33085_1 234 VILYGEPGTGKTLLAKAVANQTSATFLRV-VG-----SEL---IQKYLGDGP-KLVRELFRVaDDHSPsIVFIDEIDAVGS 304
                  579*************************8.44.....344...357999988.7777776651456664678999999884 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.1e-05     0.003     120     198 ..     234     306 ..     223     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.1e-05
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                  ++l G  G+Gktlla+++a++    f     + l +  y+G+    ++ +l+++ad +       i++ideid +  k 
  MMETSP1174-20130828|33085_1 234 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGD-GPKLVRELFRVADDH----SPSIVFIDEIDAVGSKR 306
                  678999*******************98888888876.69995.6789999**999854....568*********97654 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05    0.0068      38      60 ..     232     254 ..     225     263 .. 0.85
   2 ?   -2.2   0.1      0.87   2.4e+02     360     392 ..     407     439 ..     401     443 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
    TIGR00764  38 rnvlliGePGvGksmlakamael 60 
                  + v+l GePG+Gk++laka+a+ 
  MMETSP1174-20130828|33085_1 232 KGVILYGEPGTGKTLLAKAVANQ 254
                  679*****************975 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.87
    TIGR00764 360 lggvvraagdiavkkgkkyvtredvlealklak 392
                  + +v   ag +a ++ +  vt+ed ++a++ a 
  MMETSP1174-20130828|33085_1 407 IKAVCTEAGLLALRERRMKVTHEDFVKAKEKAL 439
                  5678889999*****************998775 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.9e-05    0.0081      45     152 ..     234     345 ..     192     384 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.9e-05
    TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfidea.......yslarGGekdfGkeaidtlvk.emedkreelvlilaGys 152
                  +i+ G+PGtGkt +a+ +a+            ++ v  ++l+ +y+G+  + +re+ + a   +  ++fide        y    GG ++  +  ++ l + +  d+r ++ +i+a  +
  MMETSP1174-20130828|33085_1 234 VILYGEPGTGKTLLAKAVANQT-------SATFLRVVGSELIQKYLGDGPKLVRELFRVAddhSPSIVFIDEIdavgskrYDSGSGGTREIQRTMLELLNQlDGFDERGDVKVIMATNK 345
                  5889***********9999754.......45788888999****************99883334689****962222222444556666666666665544223466667777766655 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00056      0.15     485     526 ..     229     270 ..     185     272 .. 0.79
   2 ?    3.0   0.0     0.018       4.9     257     299 ..     270     314 ..     268     347 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00056
    TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                  kP    + +G  G Gkt lak++a++ + ++lr   se   k
  MMETSP1174-20130828|33085_1 229 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 270
                  66677788999**********************999998776 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.018
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivga..gatsggs 299
                  ky Gd  + ++e+ +  ++++  i+fiDei ++ +   +++sgg+
  MMETSP1174-20130828|33085_1 270 KYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGSKryDSGSGGT 314
                  8999999999999999999999********987432224555554 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0014      0.39      17      44 ..     236     263 ..     230     266 .. 0.88
   2 ?    1.8   0.0      0.14        39      83     149 ..     276     346 ..     269     356 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0014
    TIGR02237  17 iyGpggsGKtnialilaveaaekgkkvv 44 
                  +yG++g+GKt +a  +a ++ +++ +vv
  MMETSP1174-20130828|33085_1 236 LYGEPGTGKTLLAKAVANQTSATFLRVV 263
                  7****************99999988876 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.14
    TIGR02237  83 ekaiqkaskliekekadlvvvDsltal....yRleksddrislklelarqlslLlslArkkdlavvi.tnqv 149
                   k ++++++++++++ ++v +D + a     y +  ++   ++++ + + l+ L  +  + d+ v++ tn++
  MMETSP1174-20130828|33085_1 276 PKLVRELFRVADDHSPSIVFIDEIDAVgskrYDSGSGGT-REIQRTMLELLNQLDGFDERGDVKVIMaTNKI 346
                  578999999***********9998664221133333333.57788888888888899999999998636665 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00029     0.078      41     104 ..     234     304 ..     224     344 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00029
    TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksaiylpl.....kelaqllvev..legleqaelvalDdvealag 104
                  + l+Ge+g+Gk+ L +A++++++++  +++  +l      +  +l  e+  ++ +++ ++v +D+++a+ +
  MMETSP1174-20130828|33085_1 234 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELiqkylGDGPKLVRELfrVADDHSPSIVFIDEIDAVGS 304
                  789****************9998775555433330000022233333442234455566777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 1084.71
//
Query:       MMETSP1174-20130828|33091_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 1304.66
//
Query:       MMETSP1174-20130828|33096_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-06   24.0   0.1    8.4e-06   23.8   0.1    1.2  1  TIGR00003 TIGR00003: copper ion binding protein
    4.4e-05   21.8   0.1    4.9e-05   21.6   0.0    1.2  1  TIGR02052 MerP: mercuric transport protein periplasmic component


Domain annotation for each model (and alignments):
>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   4.1e-09   8.4e-06       8      50 ..      15      57 ..       9      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 4.1e-09
    TIGR00003  8 gmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvs 50
                  m C  C  ++ +   +++GV  v+ d+ek++v V   +p+++
  MMETSP1174-20130828|33096_1 15 EMVCGGCSGAVQRILFKIDGVFLVNCDMEKQSVTVTHLTPNAE 57
                 399*********************************9999654 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.4e-08   4.9e-05      26      67 ..      10      51 ..       2      77 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.4e-08
    TIGR02052 26 tlevPgmtcaacPitvktalkkvdGvekaevsfkqklavvtf 67
                 t+    m c+ c  +v++ l k+dGv  ++ +++++ ++vt+
  MMETSP1174-20130828|33096_1 10 TVFNVEMVCGGCSGAVQRILFKIDGVFLVNCDMEKQSVTVTH 51
                 444557**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 353.39
//
Query:       MMETSP1174-20130828|33097_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1040.38
//
Query:       MMETSP1174-20130828|33101_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1003.12
//
Query:       MMETSP1174-20130828|33104_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.1   0.2      2e-05   21.5   0.0    1.3  2  TIGR00115 tig: trigger factor
    0.00018   18.7   0.0    0.00036   17.8   0.0    1.4  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.6e-09     2e-05     148     211 ..      83     148 ..      76     184 .. 0.83
   2 ?   -4.0   0.0      0.53   1.1e+03     334     348 ..     204     218 ..     194     228 .. 0.56

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 9.6e-09
    TIGR00115 148 aaekgDivtidfegkv....dGeafeggkaedfelelgsgqfipgfeeqlvGmkaGeekeikvtFped 211
                    e+g ++++ ++g+      Ge f  g  +++ +++gs++ i+g + +l  m +Ge++e+ v   ++
  MMETSP1174-20130828|33104_1  83 TFEDGSVLIVRYKGSFkekdTGENFVFGDSNGIMVTVGSDSAIDGWNAALRTMRTGEVAEFSVA--SN 148
                  678888888888884436779****************************************997..44 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.53
    TIGR00115 334 lkeeAekrvklglil 348
                   + +Aek vk + i 
  MMETSP1174-20130828|33104_1 204 ERRQAEKAVKKEGIE 218
                  345566666655554 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-07   0.00036     123     176 ..     123     176 ..     114     177 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.7e-07
    TIGR03516 123 dlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                    i G   +l+ m++ge + f + s  +yG  G +  i +n+p++ +v ++++k
  MMETSP1174-20130828|33104_1 123 SAIDGWNAALRTMRTGEVAEFSVASNYGYGSSGIKPVIPPNTPLHFEVEIQDYK 176
                  56889999*****************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1191.20
//
Query:       MMETSP1174-20130828|33102_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1304.81
//
Query:       MMETSP1174-20130828|33105_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 635.50
//
Query:       MMETSP1174-20130828|33107_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 227.57
//
Query:       MMETSP1174-20130828|33109_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 860.68
//
Query:       MMETSP1174-20130828|33112_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-62  206.4   1.5    8.7e-62  206.2   1.0    1.0  1  TIGR00235 udk: uridine kinase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   1.0   2.1e-65   8.7e-62      26     202 ..       1     176 [.       1     181 [. 0.97

  Alignments for each domain:
  == domain 1    score: 206.2 bits;  conditional E-value: 2.1e-65
    TIGR00235  26 ivellkkekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDliiPeggknevainllkaki 202
                  i++ l +++i+ +s+DnyYkd s ++++ r + nfDhPdald+dl++eh+ +Lk+g ++ +P Yd+  h+r++ +v+v+p kv+++eGil+++ e+lrd ld+kifvdt  dirlirrlerD++er rs  sv++qy+k+vrpm++ fveptk +a++i+P g  n+va++l+  ++
  MMETSP1174-20130828|33112_1   1 IRQGLPESEIAYLSHDNYYKDISGLSFEMRASHNFDHPDALDTDLMYEHVMKLKDGIEISMPTYDFGTHKRMETSVRVHPCKVILVEGILIFTHEKLRDALDVKIFVDTADDIRLIRRLERDMQERKRSAVSVVNQYKKTVRPMHKLFVEPTKAHANVIVPDG-LNDVALDLIVSRL 176
                  56778899*********************************************************************************************************************************************************86.689****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|33114_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|33110_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-176  585.0  21.4   2.9e-176  584.9  14.8    1.0  1  TIGR00769 AAA: ADP/ATP carrier protein family


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.9  14.8    7e-180  2.9e-176       9     472 .]       2     467 ..       1     467 [. 0.97

  Alignments for each domain:
  == domain 1    score: 584.9 bits;  conditional E-value: 7e-180
    TIGR00769   9 ilPlfllffcilfnytilrdtkdtlvvtakgsgaevipflkvwvvvPsavivmliyaklsnvlskealfyaviapflvffalfavvlyPlsdllhpealadkllellpprlkgfiailrkWsfalfyvlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklrasl..segvdawavslkalmvivvvsgliiillyrwinrnvllderlkkaa.lkekkakpklsakeslkflvsskyildlallviaygisinlvevvWksklkeqypskneysafmgefstltGvvsvllmlllgnvlrkygWlvaalvtPlvllltGvaffslilfakkaaslvavlgmtPlllavvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgllvifgslaastpylavilliivvvWlaaakklekef 472
                  ++Pl+l+ffc+lfnytilr+tkd+l+vta+gsgaevipflk++v +P+a  ++liy+ l+n+ls + +fya++ pfl ff++fa+vlyPl++++hp+a a    +l  p+l  ++ai+r+Wsf+lfy++aelWgsvv sl+fWg an + +++eak++y+lfg+ anval+++g v+k +s   ++   ++g d+ a +lk lm+ vv+sg ++ ++++ ++++v++d+   +   +++ k+k+k+++ es kfl+sskyi+ la+lviay+++in+vev+Wk  l++ +p + +ysaf+g+fs +tG+v++ +m+  +++lrk+gW+ +a++tP vll +G++ffsl ++    ++++a+l++tPl+lavvvga+qn+ sks+kyslfd+tkema+iPl++e+k kgka idv+++ +GksGG+l+qq+ll+ +gslaa+tpyla+ l +i+++Wl+aa +l ++f
  MMETSP1174-20130828|33110_1   2 LVPLALMFFCVLFNYTILRNTKDVLMVTAPGSGAEVIPFLKTYVQLPGATAFILIYTSLCNRLSPNKVFYAIVLPFLSFFSTFAFVLYPLRNIIHPHAAAA-AWALQAPNLAAPLAIVRNWSFSLFYMFAELWGSVVASLIFWGQANAVMNVAEAKKYYSLFGIAANVALLAAGWVMKGASAFAENHaaATGADPYATTLKVLMASVVASGGVMTACHKFVQKKVMTDPECVDDTaVRKSKTKTKMTMGESAKFLFSSKYIRCLATLVIAYSMAINIVEVTWKGSLRAAFPDPSAYSAFLGTFSQYTGMVTIGMMVAGSTILRKFGWGFTAKITPKVLLASGAIFFSLTIAPGMWSPVAAALSTTPLMLAVVVGAVQNIASKSAKYSLFDPTKEMAFIPLSPEEKTKGKAVIDVLGKTVGKSGGSLVQQALLLSLGSLAAATPYLALFLGAIILAWLIAADSLSNQF 467
                  79**********************************************************************************************98765.678999*********************************************************************988875544323899************************************99887666***********************************************************************************************************************************************************************************************************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1755.10
//
Query:       MMETSP1174-20130828|33118_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1174-20130828|33122_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1174-20130828|33117_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1209.90
//
Query:       MMETSP1174-20130828|33115_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-171  568.2   4.9     3e-171  568.0   3.4    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
   1.1e-102  342.2   1.6   1.3e-102  342.0   1.1    1.0  1  TIGR02053 MerA: mercuric reductase
    3.1e-73  244.7   3.4    3.9e-73  244.3   2.4    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    5.8e-68  227.6   0.7    6.9e-68  227.4   0.5    1.0  1  TIGR03452 mycothione_red: mycothione reductase
    1.1e-66  223.8   3.0    1.3e-66  223.5   2.1    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    8.1e-57  191.0   1.2      1e-56  190.6   0.9    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    1.2e-46  157.1   2.9    1.6e-46  156.7   2.0    1.1  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    8.2e-24   82.0   1.1    8.2e-24   82.0   0.7    2.1  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    2.1e-20   70.6   1.5      7e-14   49.1   0.1    2.5  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.2e-18   63.9   7.6    5.9e-12   42.7   1.1    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    2.5e-18   63.7   3.2    7.7e-18   62.1   0.5    2.0  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.4e-12   45.3   0.2    2.7e-11   41.1   0.0    2.2  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.3e-11   41.8   2.9    3.7e-08   30.4   0.5    3.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.5e-11   39.1   1.2    2.4e-05   19.8   0.0    3.1  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.2e-10   38.2   0.7      1e-06   25.3   0.0    2.4  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.8e-10   37.9   0.3    3.9e-06   23.7   0.0    2.4  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.4e-09   33.6   1.4      5e-07   26.5   0.0    3.2  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    1.1e-08   32.0   0.8    0.00031   17.3   0.1    2.2  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    7.7e-07   26.1   0.7    0.00037   17.3   0.0    3.0  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    2.3e-06   24.2   5.1    5.4e-05   19.7   0.3    2.1  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    6.3e-05   19.9   0.7     0.0038   14.1   0.0    2.1  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    9.3e-05   20.1   3.7    0.00017   19.2   0.2    2.9  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00023   18.3   1.1     0.0012   15.9   0.1    2.2  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00065   15.8   2.3     0.0018   14.3   0.2    2.4  3  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
    0.00069   15.3   4.0     0.0036   12.9   0.9    2.7  3  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00077   16.7   5.8     0.0014   15.8   1.2    2.3  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0012   15.9   3.4       0.19    8.6   0.4    2.4  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0019   14.7   5.3      0.028   10.9   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0029   14.3  13.5     0.0062   13.2   1.7    3.9  4  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0035   14.2   1.2     0.0035   14.2   0.8    2.2  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
  ------ inclusion threshold ------
      0.018   11.2   1.5       0.15    8.1   0.1    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.019   11.8   1.0      0.037   10.8   0.2    1.8  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.028   10.9   2.2      0.069    9.6   0.0    2.4  3  TIGR00551 nadB: L-aspartate oxidase
       0.03   10.8  12.1      0.064    9.7   2.8    2.6  3  TIGR02734 crtI_fam: phytoene desaturase
      0.036   11.0   7.0     0.0076   13.2   0.6    2.6  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
        1.1    6.0   9.5       0.06   10.2   0.7    2.4  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
        3.3    3.8   8.6       0.13    8.5   0.5    2.4  3  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.0   3.4  2.7e-173    3e-171       1     461 []      48     514 .]      48     514 .] 0.97

  Alignments for each domain:
  == domain 1    score: 568.0 bits;  conditional E-value: 2.7e-173
    TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGtClnvGCiPtKalLksaevveelke.akelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplk.leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevv..veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalgkaihv 461
                  +yd+vviGgGpgGYvaAi+aaqlglk+a+ve   +lGGtClnvGCiP+KalL+s++++ee+++ ++++gi++ +v++d+ ++++ k+k v+ l+gG+++L+kk+kv+ +kG++k+++++ v v+ +++  + l++kni+iAtGse++ lp   +++++k +++s++al l+e+p++++++GgGviG+E++s++++lG++vtv+e+ldri+p +d+e++k   +  kk+++k++ ++kvt  e + d+v+  ve  k+ ++++lea+  Lv++Gr+p +++lgle++g+e+d+ g+i+vd++++t++p+iyaiGD+i+++mLAh+A++eg+ ++e +ag    +++y a+P viyt Peva+vG++e+++keeg+++++g fpf+an++a+a++++dG+vkv+ dk+t++ilGahi+g++a e+i+e+++ +e ++++e++a+t+h+HPtlsEa+kea+ aa++k+ih+
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGrGTLGGTCLNVGCIPSKALLHSSHLFEEANHdFAKHGIQLGSVSMDVGQMMASKDKAVSALTGGIEYLFKKYKVDYVKGYGKITSPNGVGVALTEGGnQDLDTKNILIATGSEVTPLPPVpVDNAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDTVKlhVEDVKTgKASVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESLAGFVG-HVNYGAIPGVIYTFPEVATVGKSEDDLKEEGVAYNTGVFPFSANSRARAVDQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAFKEACMAAYDKPIHF 514
                  69*****************************8789****************************************************************************************987765699****************99877**************************************************************************************7777777777557777777999*****************************************************************************998.9***************************************************************************************************************************96 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.0   1.1  1.2e-104  1.3e-102       1     454 [.      49     508 ..      49     513 .. 0.94

  Alignments for each domain:
  == domain 1    score: 342.0 bits;  conditional E-value: 1.2e-104
    TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve.rGilGGtCvnvGCvPSKallraaevaklakkas..vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl...gkevvgakrvliAtGarpa.vPeipGLkeae..yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtve..kndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAlaFy 454
                  ydlv+iG+G ++  aaikaa+lg k + ve rG+lGGtC nvGC+PSKall+ +++ + a++ +   g++  +v++d+ +++++k+++v  l     e + ++y+ vd+++g++k+++++ v v+l   g++   +k++liAtG+  +  P++p  ++a+  +++s+ +l+l +ip++++viGgg+i++E++ +++rlG +vt+++  +r+++ ++ ei++   ++ +++ +++   +kv+  ++ +g++++++ve  k+++ + +ead  lv  GR+p ++gL+Le++g ++d+ G i+vd++ +t+ p+iyA GD i+g++l + A +eG    e  l g   ++++ ++P v++t PevA+vG +e++l+++g+++++ + + +a +ra++  +  G++K+  +k t ++lg+++++++A+e+i ea++ ++ g+  +d+++t+h ++t++E+ k A +a y
  MMETSP1174-20130828|33115_1  49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVEgRGTLGGTCLNVGCIPSKALLHSSHLFEEANHDFakHGIQLGSVSMDVGQMMASKDKAVSALTG-GIEYLFKKYK-VDYVKGYGKITSPNGVGVALtegGNQDLDTKNILIATGSEVTpLPPVPV-DNAGkkIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEI-DGDTVKLHVEdvKTGKASVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVES-LAGFVGHVNYGAIPGVIYTFPEVATVGKSEDDLKEEGVAYNTGVFPFSANSRARAVDQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAFKEACMAAY 508
                  9**************************99769***************************99988768899999******************965.6899*****7.******************99888888888899*******85438****6.5554479*******************************************************************************999.89999999883233445568*****************************************************************9765555.5558899******************************************************************************************************************99855 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   2.4   3.5e-75   3.9e-73       2     442 ..      48     500 ..      47     503 .. 0.90

  Alignments for each domain:
  == domain 1    score: 244.3 bits;  conditional E-value: 3.5e-75
    TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeed.lvGGtcvirGcvPkkllvyase.faeeledakgyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle...dgktytaekiliavGgrp.vkpelPGaela...itsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtls.....kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeel 442
                   ydl viG+G GG  aa  aa+lG k a +e    +GGtc+  Gc+P k l+++s+ f e  +d + +G + + + +d  +++a+kdk +  l g    l++k  v+ ++g +++  +n v v       + + +++ilia+G+   + p +P  + +   + s  a+dl ++Pk+++v+GgG i+ e+ +++r lG++vt +   ++i+ g d ++ ++  +  +++ ++  l t ++  e + d +k  +      k   ++adv l+++Gr P ++glgle+ G+e++  g i+vd++ +t++psiya+Gd+ d   l+  a +e+ a +e+   +   ++++  +   +++ PevatvG se++ +e+     ++   +f     + +  q   ++k++ d+ +d++lGah++G++a+e+i  + i +  Ga+ +d  +t+  hP+++e +
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRgTLGGTCLNVGCIPSKALLHSSHlFEEANHDFAKHGIQLGSVSMDVGQMMASKDKAVSALTGGIEYLFKKYKVDYVKGYGKITSPNGVGVALtegGNQDLDTKNILIATGSEVtPLPPVPVDNAGkkiVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDTVKLHVEdvktgKASVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVES-LAGFVGHVNYGAIPGVIYTFPEVATVGKSEDDLKEEG-VAYNTGVFPFSANSRARAVDQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAF 500
                  59**************************99965279*******************9345566799*******************************************************99976543344899**********97678889977654333789***********************************************************************99999888888866544423333677899********************************************************************997.6788999************************998876.34444444566666667778999******************************************************9987 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.5   6.2e-70   6.9e-68       2     450 ..      48     505 ..      47     507 .. 0.87

  Alignments for each domain:
  == domain 1    score: 227.4 bits;  conditional E-value: 6.2e-70
    TIGR03452   2 hydliiiGtGsGnsil...derfedkriaivekGtfGGtclnvGciptkmfvyaaevakev.kesarlgidaeidsvrwpdivsrvfedridpiaasGeeyr.rgdktpnidvyesharfvgrktlrtedgee.itadqvviaaGsrpv.ipea.iaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakk.kfdvrlgrnvtaaeqdddgvtleldd.....GstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevvenall 450
                  +ydl++iG G G  +      +   k+  +  +Gt+GGtclnvGcip+k  ++++++ +e  ++ a++gi+  + sv  +  +    +d+     ++G ey  ++ k   ++ y + ++  g     te g++ + +++++ia+Gs  + +p++ + ++g +   +   + l+e+p++++++GgG+i le+  v+  lGt+vt+v   ++++  +d +i+++f +++kk k++ +lg++vt++e d+d v+l+++d      s++eadv lv++Gr p ++ l +e+ G+e+d  gr+ vd++ +t + +++a+Gd+ +  +l h a++e  +  + l+    + ++++  +p  ++t p +atvG +e++ +e+G   ++ v  ++  +   a++ ++g++k+++dk t ++lGahiiG++a  +i + +  + +g +++++ar     hp+l+e  ++a +
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAaikAAQLGLKTACVEGRGTLGGTCLNVGCIPSKALLHSSHLFEEAnHDFAKHGIQ--LGSVSMDVGQMMASKDKAVSALTGGIEYLfKKYKVDYVKGYGKITSPNGVGVALTEGGNQdLDTKNILIATGSEVTpLPPVpVDNAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKqKMKFKLGTKVTGSEIDGDTVKLHVEDvktgkASVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESLAG--FVGHVNYGAIPGVIYTFPEVATVGKSEDDLKEEGVAYNTGVFPFSANSRARAVDQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTC-HAHPTLSEAFKEACM 505
                  7*********99765500045555566666679***********************98876257899**97..5666654444444455555666788888614456677788888887777766666666666************7543565538889999999************************************************************9865389********************999833322245899******************************************************************9999986..578999************************************************************************************************975.69******9888865 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.5   2.1   1.2e-68   1.3e-66       2     446 ..      48     500 ..      47     503 .. 0.92

  Alignments for each domain:
  == domain 1    score: 223.5 bits;  conditional E-value: 1.2e-68
    TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveek.klGGtcvnvGcvPkkvmwyaaslaelle.daadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGaelg...ldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledg....keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseel 446
                  +yd++viGGG GG  +a +aa++G k++ ve++  lGGtc+nvGc+P k + ++++l e  + d a++G++  + + ++  ++   +d+ v+ l g  +  ++k kv+ ++Gy + t+ + v v  +e     + +k iliatG++ + +  +P  + g   +ds g + l e+Pk+++++G G i++e+  v + lG++  +v   +r++ + d+ i++k  +  +k+ ++ +  +kv+  e   ++ ++ ++ed+     ++ ++d  + +iGr+p t++lgle++g+++d  g i vd++  t++++iya+Gd +    l+  a + G    e l +     +++y  +P v+++ Pe++tvG +e++  e+    n  v+   f+a   a + ++++  +k+++  + ++++G hiiG  + e++    + +  Ga+  d   t   hPt se +
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRgTLGGTCLNVGCIPSKALLHSSHLFEEANhDFAKHGIQLGSVS-MDVGQMMASKDKAVSALTGGIEYLFKKYKVDYVKGYGKITSPNGVGVALTEggnqdLDTKNILIATGSEVTPLPPVPVDNAGkkiVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDT-VKLHVEDVktgkASVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESLAGFV--GHVNYGAIPGVIYTFPEVATVGKSEDDLKEEGVAYNTGVFP--FSANSRARAVDQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAF 500
                  7******************************9757********************9988776599******99666.9******************************************999986666666699**********9888778988777633369************************************************************999999998888888777766666.778888884444467799***********************************************************************8875..5799*********************9987777778888885..6777778888999********************************************************987 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   0.9   9.3e-59     1e-56       2     467 ..      48     502 ..      47     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 190.6 bits;  conditional E-value: 9.3e-59
    TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkk.lmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlr..pkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea..kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvk 467
                  +ydl+viGgG+GG  aa +aa+lg k + ++         +  +GGtc nvGcip k l+h + l+ +a +d  k+G +    v  d  +++ + ++ + +l  +    +++ kv+y+ +y+++  ++ +     ++ ++ l +k++liatG    p  p  ++ a +  + s   + l+++p   +v+G++ + le       lg +vtv+     ++ G d ++a+k  +  k+q +kfk + +++  e  ++  k  v+   ++++ + e d  l +iGr++ +++l+le++g++++ + g+i++d+  +t++psiya+Gd +++ + l+  a + G    + l  +    v+y  +p  ++t  e ++vG se++  e     n  vf    ++   +v     +s  ++kv+  k   +r++G h++Gpnage++    + +  g + +d+  t   hp+ +e f +
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVE-----G---RGTLGGTCLNVGCIPSKaLLHSSHLFEEANHDFAKHGIQLGS-VSMDVGQMMASKDKAVSALTGGIEYLFKKYKVDYVKGYGKITSPNGVGVALTEGGNQDLDTKNILIATGSEvtPLPPVPVDNAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVeFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDtvKLHVEDVKTGKASVLEADVCLVSIGRRPFTQGLGLEEMGLETD-RIGRIVVDKHFQTKIPSIYAIGDAIDG-PMLAHKAEEEGIACVESLA-GFVGHVNYGAIPGVIYTFPEVATVGKSEDDLKEEGVAYNTGVFPFSANSRARAVD----QSDGMVKVLSDK-TTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAFKE 502
                  7***********************9988654.....3...4469***********76378888888888889*******998.*********************************************************************7533555556777777889999************************************9734566789**********************98887776665663366666666778888999************************98.689********************9976.6799999999988888875.567789***********************99988888888888665554444443....355699988765.578*********************************************976 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   2.0   1.4e-48   1.6e-46       3     467 ..      48     500 ..      46     511 .. 0.85

  Alignments for each domain:
  == domain 1    score: 156.7 bits;  conditional E-value: 1.4e-48
    TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtl.resagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlk.ie...gielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgsk.hvv.fesgk..eldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgsk..ykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeel 467
                   ydlvvig g gg  a  +aa l  k  +v +     g     +lggtc+nvgc+p k ++  ++ +++   + a  g +l   sv  +   ++a+k+kav+ +    e +fk    +++ +g+g +   n v v  +   +    + ld++ il+atgs    l  ++     ++ + s  a+ l e pk ++++ggg i +e+  +   ++  g +v+++   d i+ g dse+ k++ +  + + ++ +   + +  e + d  k hv   ++gk   l+ dv +++igr p +q l l+++g+e    g i vd++ +t+++ iyaigd  d  ml+  a +eg a v+++ +    + ++  +   +++ p + ++g  e++     e va y++   p+  n           +vk+++d++   +lg h++g  + e+i    i +  +a   d+  t   hpt +e +
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACV-E-----GR---GTLGGTCLNVGCIPSKALLHSSHLFEEAnHDFAKHGIQLG--SVSMDVGQMMASKDKAVSALTGGIEYLFKKY-KVDYVKGYGKITSPNGVGVALTEGGN----QDLDTKNILIATGSEVTPLPpVPvdnAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSV---WRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDTVKlHVEdVKTGKasVLEADVCLVSIGRRPFTQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESLAGF-VGHVNYGAIPGVIYTFPEVATVGKSEDDLK--EEGVA-YNTGVFPFSANSRARAvdQSDGMVKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGMEYGASSEDIARTCHAHPTLSEAF 500
                  69*********************9887654.3.....32...57************99998888877655167788888775..67778899********************986.58*************99997766554....679***********8666532330013356789*************************9987...5789************************999999888887776666666667777663553245665225899*********************************************************************98776.56789999****************999864..35565.7778889988876654115668****************************************************98865 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.3   1.4e+02       2      21 ..      51      70 ..      50      75 .. 0.86
   2 !   82.0   0.7   7.4e-26   8.2e-24     149     418 ..     221     487 ..     210     500 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.3
    TIGR03385  2 ivivGgvaaGasaAsrvrRL 21
                 +v++Gg+ +G  aA ++  L
  MMETSP1174-20130828|33115_1 51 LVVIGGGPGGYVAAIKAAQL 70
                 79***********9988776 PP

  == domain 2    score: 82.0 bits;  conditional E-value: 7.4e-26
    TIGR03385 149 vekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlneevk..svegeek...vevltsgk..vyqaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk..diefkGvlGtsivkfldltiaktGltenelkklnidykt..vevkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlt 418
                   ++++viGgG iglem    ++ g +vt++e  ++i ++  D+eiak   +  +k++++++l  +v+  +++g+ +   ve ++ gk  v +aD+ ++++G +P ++   +++++l++++ G i+v+++fqt ++ iyaiGD+++             lA  a+  g    e +aG   ++++ G +   i  f   ++a++G  e++lk +++ y+t      a+++a+   +++d ++k++ +k t +ilga ++G + + + i  + + ++ ++  +d++
  MMETSP1174-20130828|33115_1 221 PKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRI-IPGTDSEIAKKFLQICKKQKMKFKLGTKVTgsEIDGDTVklhVEDVKTGKasVLEADVCLVSIGRRPFTQGlgLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPM----------LAHKAEEEGIACVESLAGFvgHVNY-GAIPGVIYTFP--EVATVGKSEDDLKEEGVAYNTgvFPFSANSRARAV-DQSDGMVKVLSDKTTDRILGAHIIGPN-AGEMIAEAVIGMEYGASSEDIA 487
                  57899*******************************.99***********************9999632566665322255566554226899***********9985236999*****************************98653..........7999999999999999998766666.66666677775..69************999988731446788888865.789999*******************99.6666777667777777766665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   3.9e-07   4.3e-05       1      35 [.      49      83 ..      49     118 .. 0.90
   2 !   49.1   0.1   6.3e-16     7e-14     142     292 ..     222     379 ..     169     387 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3.9e-07
    TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegkeag 35
                 yd+++iG+Gp+G+ aai aa+ +lkt+++eg  + 
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTL 83
                 79****************************86543 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 6.3e-16
    TIGR01292 142 kevavvGggdsAveealyLskiakkVtlvhrrdkl.......raekillerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntell..kel.leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGaiA 292
                  ke++v+Ggg   +e   +  +++++Vt+v   d++        a+k+l+   k++ k ++ ++ t +ei+Gd+   +++++++kt++ + l++d   + iG +p t+ l  +e+ le+d+ g ivvd++ +T+++ ++a GD  d   + + +a  +G++ 
  MMETSP1174-20130828|33115_1 222 KEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIipgtdseIAKKFLQICKKQKMKFKLGTKVTGSEIDGDT--VKLHVEDVKTGKASVLEADVCLVSIGRRPFTQGLglEEMgLETDRIGRIVVDKHFQTKIPSIYAIGDAID-GPMLAHKAEEEGIAC 379
                  899************************9986655522111114555555444445455555555667888876..47999**************************976225559***************************988.666666666666655 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.4   2.2e-08   2.4e-06     210     249 ..      46      87 ..      37      97 .. 0.86
   2 !   42.7   1.1   5.3e-14   5.9e-12     309     490 ..     179     366 ..     114     369 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 2.2e-08
    TIGR03140 210 kekydvlvvGgGPagaaaaiyaarkGlkvalvaer..iGGqv 249
                  +++yd++v+GgGP g  aai aa+ Glk+a v  r  +GG  
  MMETSP1174-20130828|33115_1  46 QDQYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRgtLGGTC 87 
                  789*****************************8775567765 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 5.3e-14
    TIGR03140 309 vlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefadel.......kadkvlveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpntefl..kda.velnrrGeividergrtsvkGifaaGdvttvp 490
                   l++k +++atG++   l     ++  +k v      d      k++ viGGG  G+e       + ++vtv+ef+d++        a k l+   k++   ++ t+++  ei gd     +l+++d ++++   le d  +v iG  p t+ l  +++ +e++r G iv+d++ +t+++ i+a Gd+ + p
  MMETSP1174-20130828|33115_1 179 DLDTKNILIATGSEVTPLPPVPVDNAGKKIVDSTGALDL-TEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIipgtdseIAKKFLQICKKQKMKFKLGTKVTGSEIDGD---TVKLHVEDVKTGKASVLEADVCLVSIGRRPFTQGLglEEMgLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGP 366
                  477777777777777766522222233333333333332.2346999*****************************9984432222366777777788888888888989999888...44699***************************975336667***************************98765 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.12        13     140     171 ..      48      79 ..      36      88 .. 0.86
   2 !   62.1   0.5     7e-20   7.7e-18      99     277 ..     184     362 ..     170     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.12
    TIGR02374 140 tkkaaviGgGLLGLeaaraLknlGldvsviel 171
                    + +viGgG  G  aa    +lGl++  +e 
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEG 79 
                  45669**********************99985 PP

  == domain 2    score: 62.1 bits;  conditional E-value: 7e-20
    TIGR02374  99 kLilatGsy.pfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleke..tveivkes.vekaerlrfkDGssleadlvvlaaGirPrde.La.aeaGlkvndrrGiivndsmqtsdPdiyavGec 277
                  ++++atGs  + ++P+p  D+ g    ++i D       ++  k+ +viGgG++GLe  +  ++lG +v v+e+  +++     ++a + Lq   +k+ ++++l+++    ei +++   ++e ++    s+lead+ ++++G rP ++ L+  e Gl+ +  + i+v+++ qt++P iya+G+ 
  MMETSP1174-20130828|33115_1 184 NILIATGSEvTPLPPVPV-DNAG----KKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQ-ICKKQKMKFKLGTKvtGSEIDGDTvKLHVEDVKTGKASVLEADVCLVSIGRRPFTQgLGlEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDA 362
                  678899996145667764.4333....56667777778889999***********************************9877777777776.57888899999654115688999944578999*99******************7754873579****98889******************86 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.2        22     122     159 ..      27      62 ..      11      78 .. 0.67
   2 !   41.1   0.0   2.4e-13   2.7e-11     120     293 ..     196     377 ..     170     384 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.2
    TIGR03169 122 vKPleellaaweellekakaseetkslavvGgGaagvE 159
                  +KP  ++ a ++++   +  + ++ +l+v+GgG +g  
  MMETSP1174-20130828|33115_1  27 TKPA-TSSAIFRSFGSTTPVQ-DQYDLVVIGGGPGGYV 62 
                  6663.3333355555554333.3459********9964 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 2.4e-13
    TIGR03169 120 vpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevede.........alllaegetleadavllatgakapaw...LaesglsldedGflavkktLqslshpevFaaGDcav..ikeaprpkaGV 293
                  +p  P++++ +++  +  +++  e +k+++v+GgG+ g+E+   +   +++ g +  v+++    ++++++ +++ k++ ++ +k++++    ++vt  e +          +++++ + lead+ l+++g ++ +    L+e gl++d+ G++ v+k++q+ + p+++a GD +   + +++ ++ G+
  MMETSP1174-20130828|33115_1 196 LPPVPVDNAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGS-V---WRRLGTN--VTVVeFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTGSEIDgdtvklhveDVKTGKASVLEADVCLVSIGRRPFTQglgLEEMGLETDRIGRIVVDKHFQT-KIPSIYAIGDAIDgpMLAHKAEEEGI 377
                  445577888888888888889999999*************853.4...4444444..4444366899*********************999999999887777899999989999******************9875445*********************9.99********9742255566666665 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0079      0.88     266     305 ..      42      81 ..      36      90 .. 0.85
   2 !   30.4   0.5   3.3e-10   3.7e-08     270     429 ..     219     367 ..     209     386 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0079
    TIGR01316 266 dtpvevgkkvvviGgGntavdaartalrlGaevhvvyrrt 305
                   tpv+     vviGgG     aa+ a +lG ++ +v  r+
  MMETSP1174-20130828|33115_1  42 TTPVQDQYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRG 81 
                  5899999999999999999999999999999999986655 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 3.3e-10
    TIGR01316 270 evgkkvvviGgGntavdaartalrlGaevhvvyrrtredmtareeeikhaeeeGvk..fefllqpveviGde.eGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGea 429
                  e+ k+++viGgG + ++      rlG++v+vv    r    +  e  k+  +   k  ++f    ++v G e +G+ + +               +++ + t++  +lead  +v+iG+++    +  e+ +l+t + G ivvd++++t+i+ ++a Gd+i G  
  MMETSP1174-20130828|33115_1 219 EIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKqkMKFK-LGTKVTGSEiDGDTVKL---------------HVEDVKTGKASVLEADVCLVSIGRRPftQGLGLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGDAIDGPM 367
                  56788999999999999999999999999998888776555544444443333322002222.23455555423433333...............333345677789************983356899*********************************9975 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00079     0.088     532     579 ..      43      90 ..      30     140 .. 0.84
   2 !    9.1   0.0   0.00037     0.041     529     608 ..     213     283 ..     196     298 .. 0.77
   3 !   19.8   0.0   2.2e-07   2.4e-05     754     827 ..     301     375 ..     289     455 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00079
    TIGR03315 532 qlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkni 579
                     +++  + viG+GP G  a+   a+ Gl+ + +e + + gG++ n+
  MMETSP1174-20130828|33115_1  43 TPVQDQYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLNV 90 
                  5567788899***********************************987 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00037
    TIGR03315 529 ekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkniiPefrisaeviqkdlelvkkkGvefklGv 608
                   + +l++  +++ viG+G  Gl  g + +r G++vtv+e        +++iiP     +e+ +k l++ kk+ ++fklG 
  MMETSP1174-20130828|33115_1 213 GALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEF-------LDRIIPG--TDSEIAKKFLQICKKQKMKFKLGT 283
                  5555566666899*************************96.......5667775..457777777777777777777775 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 2.2e-07
    TIGR03315 754 pvetgelveleadaviaavGeqvdtel..lkklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiad 827
                   v+tg+   lead  ++++G++  t+   l+++g+e+d+ g++vv+++  +t+++ ++ iGda  GP    +a  +
  MMETSP1174-20130828|33115_1 301 DVKTGKASVLEADVCLVSIGRRPFTQGlgLEEMGLETDRIGRIVVDKH-FQTKIPSIYAIGDAIDGPMLAHKAEEE 375
                  6999****************99766542379****************9.99****************877666555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   9.1e-09     1e-06     378     472 ..      47     142 ..      24     150 .. 0.82
   2 !   11.0   0.0    0.0002     0.022     362     423 ..     203     267 ..     194     335 .. 0.66
   3 ?   -3.9   0.0       6.4   7.1e+02     613     638 ..     350     376 ..     347     378 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 9.1e-09
    TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreela..elvrdlaselkelgvevklGveadaelvlaekPDavvlatG 472
                   +  ++v+GgGP+G  aa++aa+ G +   +e   +lGG    +  +p ++ l+  +l ++ +++ ++ g+++   v+ d ++++a k  av   tG
  MMETSP1174-20130828|33115_1  47 DQYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLNVGCIPSKALLHssHLFEEANHDFAKHGIQLG-SVSMDVGQMMASKDKAVSALTG 142
                  446799*******************************************9988622699999999999998764.2467888888888888776666 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.0002
    TIGR03997 362 raGre.lkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereee..lGGqvklaak 423
                   aG+  +  + +l  ++ +k+++v+GgG  Gle      r G +vt++e  ++  +G   ++a k
  MMETSP1174-20130828|33115_1 203 NAGKKiVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRiiPGTDSEIAKK 267
                  589997778899999*********************************97655224544444443 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 6.4
    TIGR03997 613 kdkvlevyriGDcl.aPRrveaaileG 638
                  + k + +y iGD++  P  +++a  eG
  MMETSP1174-20130828|33115_1 350 QTKIPSIYAIGDAIdGPMLAHKAEEEG 376
                  6678899*****994577788887776 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00012     0.013       1      32 [.      50      82 ..      50     117 .. 0.87
   2 !   23.7   0.0   3.5e-08   3.9e-06     110     291 ..     178     365 ..     151     378 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
    TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliie.kga 32
                 d+++iG+GP G  aai+a + gl++  +e +g+
  MMETSP1174-20130828|33115_1 50 DLVVIGGGPGGYVAAIKAAQLGLKTACVEgRGT 82
                 799*********************999984455 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 3.5e-08
    TIGR04018 110 eeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpy..vkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfesevk..eieeesvtletp...egeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaag 291
                  +++++k++++atG   ++ l  vp ++  k     + a     + ++++v+Gg     +      r g++vt+v   +++       +  ++ +  k++k+k+++ ++v+  ei+ ++v+l+ +   +g+ + +e+d  l+ +G rp ++   le++g+e+++  ++ v+d +++ t+++++y  G    g
  MMETSP1174-20130828|33115_1 178 QDLDTKNILIATGSE-VTPLPPVPVDNAGKKIVDSTGALDLteIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKVTgsEIDGDTVKLHVEdvkTGKASVLEADVCLVSIGRRPFTQGlgLEEMGLETDRI-GRIVVD-KHFQTKIPSIYAIGDAIDG 365
                  556667777777753.33344566655555444444444441145799************99999*******************************************96559**99998876533589999***************88861256666666555.555555.56**********9976655 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.12        14     143     189 ..      50      98 ..      41     192 .. 0.80
   2 ?    2.5   0.0     0.085       9.4     139     171 ..     219     251 ..     212     259 .. 0.84
   3 !   26.5   0.0   4.5e-09     5e-07     378     462 ..     303     384 ..     259     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
    TIGR01318 143 rvaviGaGpaGlacadvlaraGvkvvvfdrypeiGG.lltfG.ipsfkl 189
                   + viG+Gp G   a   a+ G k+   +    +GG  l+ G ips  l
  MMETSP1174-20130828|33115_1  50 DLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGtCLNVGcIPSKAL 98 
                  5689***********999999*999988888888873467764676544 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.085
    TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvkvvvfd 171
                  +  k + viG+G  Gl    v  r G++v+v +
  MMETSP1174-20130828|33115_1 219 EIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  5567899**********************9976 PP

  == domain 3    score: 26.5 bits;  conditional E-value: 4.5e-09
    TIGR01318 378 vaGseavleadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegil 462
                   +G   vleadv +++ G +p ++   l+e g+++d+ Griv++    +++qt+ p i+a Gd++ G  l   a +eG    e++ 
  MMETSP1174-20130828|33115_1 303 KTGKASVLEADVCLVSIGRRPFTQGlGLEEMGLETDRIGRIVVD----KHFQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESLA 384
                  358899***************9876269***************9....89**********************99999988877765 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.5e-05     0.005       3      41 ..      47      86 ..      45     142 .. 0.83
   2 !   17.3   0.1   2.8e-06   0.00031      98     281 ..     177     361 ..     161     364 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.5e-05
    TIGR03143  3 elydlvviGgGpaglsaGiyagraklkvliie.kdelGGq 41
                 + ydlvviGgGp g  a i a++  lk+  +e ++ lGG 
  MMETSP1174-20130828|33115_1 47 DQYDLVVIGGGPGGYVAAIKAAQLGLKTACVEgRGTLGGT 86
                 57*************************9999856778885 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.8e-06
    TIGR03143  98 kgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivrepdf..tcakaiaekvka...nPkievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsse...lfkgkvelderGyvvtnedletnveGvyaaGd 281
                  ++dl++  +liatG+    l      + +G+ +   +         ++++viGgG    e +    + + +vtv+   +      +  ia+k ++   + k++ k  + +++ + d+   + ++ + +tG+  + +a  d      +v +G  P ++   l +  +e d  G +v +++++t+++ +ya+Gd
  MMETSP1174-20130828|33115_1 177 NQDLDTKNILIATGSEVTPLPPVP-VDNAGKKIVDSTGALDLTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRIipGTDSEIAKKFLQickKQKMKFKLGTKVTGSEIDGDTVKLHVEDVKTGKASVLEA--DV----CLVSIGRRPFTQglgLEEMGLETDRIGRIVVDKHFQTKIPSIYAIGD 361
                  566777777777777777775443.44455555443333222334689**************************87766652246777888765411155667777778877776777778899999****999994..33....67999****99833344667999***********************9 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.19        21     146     181 ..      51      86 ..      42     134 .. 0.80
   2 ?    3.4   0.0     0.055       6.2     144     178 ..     222     256 ..     212     264 .. 0.88
   3 !   17.3   0.0   3.3e-06   0.00037     390     474 ..     298     383 ..     284     390 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.19
    TIGR01317 146 vavvGsGPaGlaaadqlnraGhtvtvferedrvGGl 181
                  + v+G GP G  aa + ++ G + +  e     GG 
  MMETSP1174-20130828|33115_1  51 LVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGT 86 
                  6799************99999999988888888774 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.055
    TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrv 178
                  k++ v+G G  Gl       r G +vtv e  dr+
  MMETSP1174-20130828|33115_1 222 KEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRI 256
                  66789999999999999999999999999999986 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 3.3e-06
    TIGR01317 390 eleevp.gseevleadlvllalGfvgpeqa.llddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaarav 474
                  ++e+v+ g  +vlead+ l+++G     q   l+++g++ d+ g+i  +++  +t i+ ++a Gda  G  l   a +eG ++ +++
  MMETSP1174-20130828|33115_1 298 HVEDVKtGKASVLEADVCLVSIGRRPFTQGlGLEEMGLETDRIGRIVVDKH-FQTKIPSIYAIGDAIDGPMLAHKAEEEGIACVESL 383
                  5556642567899**********99877774689************66655.56*************************99998776 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.6    0.0048      0.53     374     413 ..      50      89 ..      40     144 .. 0.80
   2 !   19.7   0.3   4.8e-07   5.4e-05     446     592 ..     169     316 ..     113     347 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0048
    TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvri 413
                  d +v+GGGp G  aa   a  G +   +e    lGG+   
  MMETSP1174-20130828|33115_1  50 DLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLN 89 
                  7799***********999******************9754 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 4.8e-07
    TIGR03996 446 avdaeeldaaraaGevvvlatGsvarp.lpapvdatvr.vldaaevleaddalaeGpvvvidplGGpvgvavaealaarGrdvsivt.pdsvvGsrlgasGdladantrl.qragvtrqlasrvv..eiardgl..vledaytgersvlecavvi 592
                   v   e +++  + + +++atGs   p +p+pvd++ + ++d + +l+    l+e p+ +i   GG +g+ +  +   +G +v++v   d ++    g+  ++a+   ++ ++ +++ +l ++v+  ei++d++   +ed+ tg+ svle +v +
  MMETSP1174-20130828|33115_1 169 GVALTEGGNQDLDTKNILIATGSEVTPlPPVPVDNAGKkIVDSTGALD----LTEIPKEMIVIGGGVIGLEMGSVWRRLGTNVTVVEfLDRIIP---GTDSEIAKKFLQIcKKQKMKFKLGTKVTgsEIDGDTVklHVEDVKTGKASVLEADVCL 316
                  5566677888899999***********557999988651556655555....5567777777789*********************73577775...344567777777624567888899999644799998622579***********99854 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.4e-05    0.0038       1      52 [.      48     100 ..      48     115 .. 0.84
   2 ?    4.3   0.1     0.031       3.5       3      37 ..     223     257 ..     222     277 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.4e-05
    TIGR00031   1 kfdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdek.gllvh 52 
                  ++d++++G G  G v a  +a+l+ +   ve r  +GG c +  +   + l+h
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLNVGCIPsKALLH 100
                  59**************************************9877755456666 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.031
    TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiG 37 
                  ++i++G G+ G  +  +  +l+ +v vve  ++i 
  MMETSP1174-20130828|33115_1 223 EMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDRII 257
                  589**************************887775 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   1.5e-06   0.00017       1      32 [.      49      80 ..      49     117 .. 0.91
   2 ?   -1.4   0.1       2.9   3.3e+02       3      30 ..     224     251 ..     223     256 .. 0.92
   3 ?   -0.0   0.0       1.1   1.2e+02      98     130 ..     269     301 ..     258     320 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.5e-06
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                 yD+vv+G+Gp G  aA ++a+ Gl+++ +e +
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVEGR 80
                 9**************************99965 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.9
    TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVllle 30 
                  ++v+G+G  G  ++    + G +V ++e
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  69*******************9999998 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 1.1
    TIGR02032  98 aekAqeagaelllettvlsveiedekvkvevre 130
                  ++  +++ +++ l+t+v+  ei++++vk++v++
  MMETSP1174-20130828|33115_1 269 LQICKKQKMKFKLGTKVTGSEIDGDTVKLHVED 301
                  344566666777777777777776666666665 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.1e-05    0.0012      21      66 ..      48      93 ..      30     129 .. 0.86
   2 ?    0.5   0.0      0.59        65      22      51 ..     222     251 ..     205     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-05
    TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGml 66
                 + D +++G+Gp G  aa   a+ glk++ +e + ++GG     G +
  MMETSP1174-20130828|33115_1 48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLNVGCI 93
                 5699*********************************988776665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.59
    TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvle 51 
                   ++i++G+G  GL  + +  + g  v v+e
  MMETSP1174-20130828|33115_1 222 KEMIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  578999***********9999999999988 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   1.6e-05    0.0018       2      31 ..      48      77 ..      47      80 .. 0.96
   2 ?   -0.4   0.0      0.47        52     147     198 ..     138     191 ..     104     193 .. 0.69
   3 ?   -2.3   0.0       1.8     2e+02     352     381 ..     334     362 ..     330     373 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-05
    TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavv 31
                 ++d vv+G+G  G  aa+++a+ glkta+v
  MMETSP1174-20130828|33115_1 48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACV 77
                 7****************************9 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.47
    TIGR01816 147 qslkadtsffveyfaldliledgevr..GvialeletGeihvfrakavvlatGG 198
                   +l  +++++   + +d ++  g+++    + + l +G  + + +k++++atG 
  MMETSP1174-20130828|33115_1 138 SALTGGIEYLFKKYKVDYVKGYGKITspNGVGVALTEGGNQDLDTKNILIATGS 191
                  456667788888888888888887652224677788888899999999999985 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.8
    TIGR01816 352 GiptnlkGqvlrdadgndsiveGlyavGea 381
                  G+ t+  G++++d +  ++ ++ +ya+G+a
  MMETSP1174-20130828|33115_1 334 GLETDRIGRIVVDKH-FQTKIPSIYAIGDA 362
                  789999999999554.78899******986 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.9   3.2e-05    0.0036     168     208 ..      48      88 ..      40      92 .. 0.91
   2 ?    0.9   0.0      0.14        16     343     423 ..     242     324 ..     221     387 .. 0.73
   3 ?   -0.5   0.0      0.36        40     748     781 ..     445     478 ..     438     489 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-05
    TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsll 208
                    D++v+G+Gp G  aA +Aa+ G++   v+ + + GG+ l
  MMETSP1174-20130828|33115_1  48 QYDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCL 88 
                  569***********************************865 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.14
    TIGR01372 343 eaGlavvaivDaRekvspelaaeareagvevikgsavaategkk....rvesvkvarvdlstaesgaeeeleaDallvsgGwsPv 423
                  + G + v++v+  ++  p +++e +++ +++ k++ +    g k    ++++ +v+  ++++ ++g+ + leaD+ lvs G  P 
  MMETSP1174-20130828|33115_1 242 RLG-TNVTVVEFLDRIIPGTDSEIAKKFLQICKKQKMKFKLGTKvtgsEIDGDTVK-LHVEDVKTGKASVLEADVCLVSIGRRPF 324
                  556.5567777777888888888887777777777765555444211122222333.3344466788899*********998874 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.36
    TIGR01372 748 lkvtltsvtdqwatlavaGPkarkllaevvegld 781
                  +kv    +td +  + + GP+a +++ae v g++
  MMETSP1174-20130828|33115_1 445 VKVLSDKTTDRILGAHIIGPNAGEMIAEAVIGME 478
                  57788899*******************9998875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.2   1.3e-05    0.0014       2      39 ..      52      89 ..      51     120 .. 0.89
   2 ?    2.5   0.1      0.14        15       1      28 [.     224     251 ..     224     256 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.3e-05
    TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRars 39
                 vv+GgG  G  AA++ a+ G+++  +E r +lGG +  
  MMETSP1174-20130828|33115_1 52 VVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGTCLN 89
                 8*********************************9865 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.14
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllE 28 
                  ++v+GgG+ GL  +    r G +vt++E
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  58************************99 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0035      0.38       1      45 [.      49      92 ..      49     111 .. 0.83
   2 !    8.6   0.4    0.0017      0.19       2      30 ..     223     251 ..     222     257 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0035
    TIGR03364  1 tdvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvrNFGq 45
                 +d+vv+G+G  G   A++aa+ Glk + +e    + G +  N G 
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVEGRG-TLGGTCLNVGC 92
                 79*************************999654.45556666665 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0017
    TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvie 30 
                  +++v+G+G++Gl +    +r G +Vtv+e
  MMETSP1174-20130828|33115_1 223 EMIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  689************************98 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.6     0.019       2.1       3      39 ..      50      86 ..      48      90 .. 0.91
   2 !   10.9   0.0   0.00025     0.028       2      83 ..     222     310 ..     221     325 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.019
    TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                 ++vviG+G +G  aa   a+ Gl+   +e    +GG 
  MMETSP1174-20130828|33115_1 50 DLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGGT 86
                 68***************************99999984 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00025
    TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaa..aqvGG...Castf....krrgfifdvGatqvaGlepGGiherifkeldlelPeakil 83 
                  k+++viG+G+ Gl  +++  + G +vt++e     ++G     a  f    k+++  f +G t+v+G e  G   ++  e d++  +a++l
  MMETSP1174-20130828|33115_1 222 KEMIVIGGGVIGLEMGSVWRRLGTNVTVVEFLdrIIPGTdseIAKKFlqicKKQKMKFKLG-TKVTGSEIDGDTVKLHVE-DVKTGKASVL 310
                  689**************************96410333321112333333335566666666.566666666655555433.5555555555 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.7   5.6e-05    0.0062       2      34 ..      52      84 ..      51      91 .. 0.90
   2 ?    2.6   0.0     0.091        10     125     163 ..     155     195 ..     101     215 .. 0.65
   3 ?    1.4   0.1      0.21        24       1      31 [.     224     254 ..     224     258 .. 0.86
   4 ?    2.3   0.1      0.12        13     106     150 ..     262     306 ..     258     327 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.6e-05
    TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                 ++iGgG+ G +aAi+aa+ g+k + +E +  +g
  MMETSP1174-20130828|33115_1 52 VVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLG 84
                 8*********************99999887766 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.091
    TIGR00275 125 teskvksi.kkeeekfevet.ekkeleakkvilatGgksyp 163
                  + +   +i + +  ++ ++  ++++l +k++++atG++  p
  MMETSP1174-20130828|33115_1 155 YVKGYGKItSPNGVGVALTEgGNQDLDTKNILIATGSEVTP 195
                  4444556634444455555578999************8765 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.21
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknk 31 
                  +i+iGgG  Gl       + g +V+++E  +
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVEFLD 254
                  59*********888888889******99655 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.12
    TIGR00275 106 ksvldaLlkelkelgvevlteskvksikkeeekfevetekkelea 150
                  +++ + +l+ +k++++++++ +kv+  + + +++++++e+ +   
  MMETSP1174-20130828|33115_1 262 SEIAKKFLQICKKQKMKFKLGTKVTGSEIDGDTVKLHVEDVKTGK 306
                  5789999*******************9999999998885544433 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.8   3.2e-05    0.0035       1      30 [.      49      78 ..      49      84 .. 0.93
   2 ?    0.7   0.1      0.41        45       3      29 ..     224     250 ..     223     252 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 3.2e-05
    TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiia 30
                 +D ++iGgG  G+ +a+++a+ G kta + 
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVE 78
                 9*************************9885 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.41
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaii 29 
                  +i+iGgG+ Gl  +    + G+++ ++
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVV 250
                  79*********9998888888777766 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0013      0.15       1      30 [.      49      78 ..      49     151 .. 0.80
   2 ?    2.3   0.1     0.081         9       2      29 ..     223     250 ..     222     257 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
    TIGR00136  1 fdviviGaGhaGieaalaaarlgaktlllt 30
                 +d++viG+G  G  aa+ aa+lg+kt  + 
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVE 78
                 689**********************98764 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.081
    TIGR00136   2 dviviGaGhaGieaalaaarlgaktlll 29 
                  ++iviG+G  G+e   +  rlg++++++
  MMETSP1174-20130828|33115_1 223 EMIVIGGGVIGLEMGSVWRRLGTNVTVV 250
                  589********************99876 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00033     0.037       1      30 [.      49      78 ..      49      98 .. 0.90
   2 ?   -2.3   0.0       3.3   3.7e+02       3      36 ..     224     256 ..     223     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00033
    TIGR02023  1 ydvlviGggpsGaaaaetLakagieville 30
                 yd +viGggp+G  aa++ a+ g +++ +e
  MMETSP1174-20130828|33115_1 49 YDLVVIGGGPGGYVAAIKAAQLGLKTACVE 78
                 799***********************9988 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 3.3
    TIGR02023   3 vlviGggpsGaaaaetLakagievillerelari 36 
                  ++viGgg+ G       ++ g++v ++e   +ri
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVEFL-DRI 256
                  6899***99999999999999999888743.555 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.7        78       2      23 ..      48      69 ..      47      88 .. 0.87
   2 ?   -2.8   0.1       3.6     4e+02       4      29 ..     223     249 ..     222     251 .. 0.74
   3 ?    9.6   0.0   0.00062     0.069     333     355 ..     340     362 ..     338     367 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.7
    TIGR00551  2 eadvvviGsGaagLsaalalae 23
                 + d+vviG+G  g  aa+ +a+
  MMETSP1174-20130828|33115_1 48 QYDLVVIGGGPGGYVAAIKAAQ 69
                 7899*************99886 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.6
    TIGR00551   4 dvvviGsGaagLsaalalaekyr.vvv 29 
                  +++viG+G+ gL +     + ++ v+v
  MMETSP1174-20130828|33115_1 223 EMIVIGGGVIGLEMGSVWRRLGTnVTV 249
                  5789********987776666655665 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00062
    TIGR00551 333 iGGisvdaygrtevkGLYaiGev 355
                  iG i+vd++ +t+++ +YaiG++
  MMETSP1174-20130828|33115_1 340 IGRIVVDKHFQTKIPSIYAIGDA 362
                  799******************85 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.8   0.00058     0.064       2      35 ..      52      85 ..      51      90 .. 0.95
   2 ?    5.6   0.3      0.01       1.1       2      31 ..     225     254 ..     224     260 .. 0.92
   3 ?   -1.7   0.0       1.7   1.9e+02     218     266 ..     262     314 ..     257     318 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00058
    TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                 vViG+G gG  +Ai+ a+ G ++  +e r ++GG
  MMETSP1174-20130828|33115_1 52 VVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGG 85
                 8********************************9 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.01
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrd 31 
                  +ViG+G+ GL +     + G++vtv+e  d
  MMETSP1174-20130828|33115_1 225 IVIGGGVIGLEMGSVWRRLGTNVTVVEFLD 254
                  8**************************776 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 1.7
    TIGR02734 218 salvealaklaedlggelrlnaeveeieteg....erataveledgerleada 266
                  s+++++  ++ ++++++++l ++v+  e +g     +++ v++++++ lead+
  MMETSP1174-20130828|33115_1 262 SEIAKKFLQICKKQKMKFKLGTKVTGSEIDGdtvkLHVEDVKTGKASVLEADV 314
                  57888999999988888888888877777663344455666666666777665 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   6.9e-05    0.0076       1      36 [.      50      85 ..      50      88 .. 0.93
   2 ?   -2.1   0.0       3.2   3.5e+02      61      84 ..     141     164 ..     128     166 .. 0.87
   3 ?    0.1   0.1      0.65        72       2      33 ..     224     255 ..     223     263 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.9e-05
    TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklpf 36
                 Dl+viGgG+ g + A + a+ gl+   +e+  +l++
  MMETSP1174-20130828|33115_1 50 DLVVIGGGPGGYVAAIKAAQLGLKTACVEGRGTLGG 85
                 9****************************9888776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 3.2
    TIGR01790  61 sdayeyrfdeearklkraYgsvdr 84 
                  ++++ey+f++++++  ++Yg++++
  MMETSP1174-20130828|33115_1 141 TGGIEYLFKKYKVDYVKGYGKITS 164
                  7899****************9987 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.65
    TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaapk 33 
                  +iviGgG  gl +     + g +v ++e  ++
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVEFLDR 255
                  79***********9999999999999986555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.4      0.97   1.1e+02       2      30 ..      52      80 ..      51      90 .. 0.87
   2 ?   10.2   0.7   0.00054      0.06       1      28 [.     224     251 ..     224     256 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.97
    TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekd 30
                 +viGgG  G + A+++a+ g k++ +e +
  MMETSP1174-20130828|33115_1 52 VVIGGGPGGYVAAIKAAQLGLKTACVEGR 80
                 8**********************999866 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00054
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtlle 28 
                  ++viGgGviGl ++    + g +vt++e
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVVE 251
                  69***********************997 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5    0.0012      0.13       1      28 [.      50      77 ..      50      79 .. 0.96
   2 ?   -0.5   0.1      0.62        69     168     201 ..     122     155 ..     105     182 .. 0.72
   3 ?   -2.8   0.1       3.2   3.5e+02       2      28 ..     224     250 ..     223     253 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0012
    TIGR01812  1 DvvivGaGlAGlraAveaakkglkvavi 28
                 D+v++G+G  G  aA++aa+ glk+a++
  MMETSP1174-20130828|33115_1 50 DLVVIGGGPGGYVAAIKAAQLGLKTACV 77
                 89************************98 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.62
    TIGR01812 168 idlktgevvvlrakavvlatGGagrvyktttnav 201
                  ++++ g++++ + kav   tGG+  ++k+   ++
  MMETSP1174-20130828|33115_1 122 VSMDVGQMMASKDKAVSALTGGIEYLFKKYKVDY 155
                  5788899****************99998654443 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 3.2
    TIGR01812   2 vvivGaGlAGlraAveaakkglkvavi 28 
                  ++++G+G+ Gl       + g++v v+
  MMETSP1174-20130828|33115_1 224 MIVIGGGVIGLEMGSVWRRLGTNVTVV 250
                  79*********9888777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        37  (0.00901999); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.01u 0.21s 00:00:01.22 Elapsed: 00:00:00.98
# Mc/sec: 692.27
//
Query:       MMETSP1174-20130828|33123_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   24.7   0.0      0.054   11.1   0.0    3.9  4  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.3e-05     0.054       2      44 ..      37      79 ..      36      96 .. 0.83
   2 !    3.5   0.0    0.0028        12       2      29 ..     117     144 ..     116     153 .. 0.89
   3 !    4.2   0.0    0.0017       6.8     104     150 ..     227     273 ..     224     290 .. 0.89
   4 ?    0.0   0.0     0.032   1.3e+02       2      34 ..     292     324 ..     291     343 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
    TIGR03665  2 vkipkdrigvliGkkgevkkeieektkvkleidseegevkvee 44
                 v + kd  + l+Gk+g++kk++ +   ++l++d+++ ++++  
  MMETSP1174-20130828|33123_1 37 VPVGKDDAAFLLGKNGSTKKKLARVSCAELDLDEHDLQLHIYG 79
                 5678888999**************************9999952 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0028
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkv 29 
                  v++p+d +g ++G++g + +++ee+ ++
  MMETSP1174-20130828|33123_1 117 VEVPEDCVGFVMGRGGATLRSMEEEWGT 144
                  799********************99776 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0017
    TIGR03665 104 IGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareAiemlie 150
                  +G++G tr+ +   +g  +   gk   i G  ++ + a++ i+ li 
  MMETSP1174-20130828|33123_1 227 LGSKGSTRRKLATAAGCILEYVGKLACICGYRKERRRAKDYIRWLIM 273
                  699***************************************99986 PP

  == domain 4    score: 0.0 bits;  conditional E-value: 0.032
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleid 34 
                  v++p   +g + G +ge  ++ie + ++    d
  MMETSP1174-20130828|33123_1 292 VEVPAGSVGFITGYRGESLRRIEAMSGTFCFTD 324
                  678888888888888888888888777655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1580.30
//
Query:       MMETSP1174-20130828|33119_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-134  444.5   0.8   4.2e-134  444.3   0.5    1.0  1  TIGR01139 cysK: cysteine synthase A
   1.1e-130  433.1   0.5   1.3e-130  432.9   0.3    1.0  1  TIGR01136 cysKM: cysteine synthases
    1.1e-92  309.0   0.7    1.3e-92  308.7   0.5    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    4.1e-91  303.4   0.2    4.7e-91  303.1   0.1    1.0  1  TIGR01138 cysM: cysteine synthase B
    3.5e-70  234.3   0.0    4.1e-70  234.1   0.0    1.0  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    1.9e-15   54.6   0.2      7e-15   52.7   0.1    1.8  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    3.6e-15   53.3   0.1    5.1e-15   52.8   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.2e-12   45.2   0.4    1.6e-11   41.5   0.3    1.9  1  TIGR02079 THD1: threonine dehydratase
    2.4e-10   37.9   0.0    3.1e-09   34.2   0.0    1.9  2  TIGR00260 thrC: threonine synthase
    2.3e-08   31.2   1.4    5.4e-08   30.0   1.0    1.6  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    0.00017   18.2   0.2       0.58    6.6   0.1    3.0  2  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    0.00044   16.9   0.0     0.0007   16.3   0.0    1.3  1  TIGR03844 cysteate_syn: cysteate synthase
     0.0047   14.1   0.1       0.01   13.0   0.1    1.6  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
     0.0071   13.0   0.0      0.011   12.3   0.0    1.2  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
     0.0078   12.6   0.0      0.013   11.9   0.0    1.3  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
  ------ inclusion threshold ------
      0.018   12.0   1.8       0.68    6.8   0.0    2.6  2  TIGR00263 trpB: tryptophan synthase, beta subunit
       0.13   10.4   0.0       0.13   10.4   0.0    2.6  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.3   0.5  1.8e-136  4.2e-134       1     298 []      52     351 ..      52     351 .. 0.99

  Alignments for each domain:
  == domain 1    score: 444.3 bits;  conditional E-value: 1.8e-136
    TIGR01139   1 iseliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsggkpgphkiqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                  i+eliG+tP++rL+ ++ e++ae++ k+e ++P++svkdri+ amie+aek+g +++g  t+ve+tsGntGialamvaaa+gykliltmpe+ms+err llka+Ga+l Lt +a gm ga++kaee++e++ + y ll+qf+np np++hr tt+pei+++++gk+d++vagvGtGGt+tG +++lk+ +p +kvvavePaespvlsgg++g+hkiqGigagfiP+++d+++ide+i++++ ++++++r+la+eeG+l GissGaavaaa++v  ++e k+k+iv+++p++gerYlst+L+
  MMETSP1174-20130828|33119_1  52 ITELIGKTPMLRLQkVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDITPGVtTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAGGMPGAVQKAEEIAETEESGY-LLQQFNNPDNPKVHRDTTGPEIWEQTEGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLSGGEAGTHKIQGIGAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPEnKGKRIVCVIPSFGERYLSTQLY 351
                  689***********9999****************************************879***********************************************************************999.********************************************************************************************************************************************999********************98 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.9   0.3  5.4e-133  1.3e-130       1     299 []      52     351 ..      52     351 .. 0.98

  Alignments for each domain:
  == domain 1    score: 432.9 bits;  conditional E-value: 5.4e-133
    TIGR01136   1 ieeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlsegkpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                  i+eliG+tP++rl+ +  e++ae++ K+E ++P++SvKdRi+ +mi++Aekrg +++g  t++e+tSGNtGiaLAmvaaakgyklil+mpe+ms+ERr llka+Ga+l lt+a+ gm ga++ka+e+ae+e  ++ ll+qf+Np+Np++Hr ttgpEi+++t+gk+d +vagvGtgGt+tG +++lk+ +p +k+vavePaespvls+g++g+hkiqgigagfiP+++d++l+de+i++++  +++++r+la+eeg+l+GiSsGaavaaa++v  ++e+++k+iv+++p++gerYLst+l+
  MMETSP1174-20130828|33119_1  52 ITELIGKTPMLRLQkVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDITPGVtTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAGGMPGAVQKAEEIAETEE-SGYLLQQFNNPDNPKVHRDTTGPEIWEQTEGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLSGGEAGTHKIQGIGAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPENKGKRIVCVIPSFGERYLSTQLY 351
                  689*******************************************************769*******************************************************************9986.555*******************************************************************************************************************************************************************98 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.7   0.5   5.3e-95   1.3e-92       1     312 [.      48     352 ..      48     361 .. 0.94

  Alignments for each domain:
  == domain 1    score: 308.7 bits;  conditional E-value: 5.3e-95
    TIGR01137   1 iadnildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpg.dtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkflnd 312
                  ia++i +liG+tP++rl+kv+ + +ae++ k+e + +  svkdri++ mie+aek G + pg  tl+ePtsGntGi la+vaa kGyk i+++Pe +s e++ +lka+Ga++  t   aa   P + ++ a+ + +  ++ + l q++n++nP+ h dttg+ei+eq+egk+d lvagvGtGGt+tG +++lk  ++ +++v ++P  s +l+++      e  ++k++GiG  fiP+ +d +++deii  d   s++++r+l++eegll+g ssG+av+aa++v  +  +++++iv ++p  +  yl+  l d
  MMETSP1174-20130828|33119_1  48 IANDITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDITPGvTTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLT--TAAGGMPGA-VQKAEEIAETEESGYLLQQFNNPDNPKVHRDTTGPEIWEQTEGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESpVLSGG------EAGTHKIQGIGAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPENKGKRIVCVIPSFGERYLSTQLYD 352
                  5789**********************************************************99***********************************************8554..344566765.67789999888999*****************************************************************877589998......445589*************************************************************9*******************988877 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.1     2e-93   4.7e-91       2     290 .]      52     351 ..      51     351 .. 0.94

  Alignments for each domain:
  == domain 1    score: 303.1 bits;  conditional E-value: 2e-93
    TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeG.dvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek.lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieG.......lrrieseylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek..avvvaiicdrGdrylstgvf 290
                  i++l+G tp++rl+++ +e  +e++ k+e  +p+ svkdr   +mi eaekrG+i +G  +l+e tsGntGialamvaa+kGyk++l mp+ +s er+  lka+Ga+l l++   Gm Ga++ a+e+++  e   ll+qfnnpdnpk h  +tG+eiw+qt+G++  +v+++Gt+Gt++G +++lk  np +++v ++pae+  + G       ++ i + + p   d sl+d+++ ++   +  + rela +eg+++G+ssG+avaaa+++    e+    +v++i+  G+rylst ++
  MMETSP1174-20130828|33119_1  52 ITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDITPGvTTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAGGMPGAVQKAEEIAETEESGyLLQQFNNPDNPKVHRDTTGPEIWEQTEGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLSGgeagthkIQGIGAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPENkgKRIVCVIPSFGERYLSTQLY 351
                  7899******************************************************5579*****************************************************************9877655489***************************************************************9876654344444467778999**************************************************7655444579***************998 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.0   1.7e-72   4.1e-70       1     303 [.      52     355 ..      52     356 .. 0.95

  Alignments for each domain:
  == domain 1    score: 234.1 bits;  conditional E-value: 1.7e-72
    TIGR03945   1 ilsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGS.vifggepgkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYldt.vYddeW 303
                  i++lig+tp+++l+k++ +  +e+ +K+E ++p +SvKdr  +a++e+a+k+g+i+pg tt++E +SGn +iaLamv+aa+G+k+i  +   +s + + ll+a+ga++ + +        ++  +++ +e++++ +  + l Q++n++n+++h  tt+ ei e+ + +vd+l++gv+t+Gtl+G++++l++ +p +kvvav+   S v+ gge+g+ +i G+Ga+  p  +d+slide+++++ + +++  rel+++eg+l G SsG++vaa+ ++ ++  ++g+++v+++p  GerYl+t +Yd  W
  MMETSP1174-20130828|33119_1  52 ITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDITPGvTTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAGG----MPGAVQKAEEIAETEESGYLLQQFNNPDNPKVHRDTTGPEIWEQTEgKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESpVLSGGEAGTHKIQGIGAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRpENKGKRIVCVIPSFGERYLSTqLYDGLW 355
                  5789******************************************************99************************************************99876544....78889****************************************************************************966654999**********************************************************9999888887746777***************986788777 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.1   2.9e-17     7e-15       7     190 ..      65     257 ..      59     362 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 2.9e-17
    TIGR01127   7 stlsditgaevylklenlqktGsfkirGalnkiaklseeek.krGvva...asaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGad..fDeayklaeelaeeegrvf.vhafdDefv.iaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslv 190
                  + +  ++ ae+  k+e++    s k r     i+++ + +  + Gv +    ++Gn     a+ a   g k  + mPes  +++    k++Ga+  L  a   +  a + aee+ae e+  + ++ f+++      + t g ei e++ ++vd +++ vG GG ++G +  +k+lnp++kv+ ve  ++p l 
  MMETSP1174-20130828|33119_1  65 QKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGDiTPGVTTlvePTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAggMPGAVQKAEEIAETEESGYlLQQFNNPDNpKVHRDTTGPEIWEQTeGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLS 257
                  55566799*******************999999998876542667755222689**99999999*******************************99877533789********99777655279999865414578999*****996479*********************************998887653 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   2.1e-17   5.1e-15      10     208 ..      51     257 ..      43     272 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 2.1e-17
    TIGR01124  10 rvyeaavetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsae.qkakGvia...asaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGen..ydeakakalelaqekgltfi.apfddplv.iaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalk 208
                   + e   +tp+ + +k+      +++ k e + p +s k r   +++ +  +  + + Gv +    ++Gn    +a+ a+  G k ++ mpe+ +  +   +kafG+++ l  ++     a +ka e+a+ ++  ++ + f++p+     + t + e+ +q+e ++d +   vG GG ++G + ++k l p +kv++ve+ +s +l 
  MMETSP1174-20130828|33119_1  51 DITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRgDITPGVTTlvePTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAggMPGAVQKAEEIAETEESGYLlQQFNNPDNpKVHRDTTGPEIWEQTEGKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLS 257
                  566777799*************************************9988765145567755222689***9999******************99999999********99877533788*********99998885378999876246789**************************************************98875 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.3   6.6e-14   1.6e-11       8     302 ..      50     338 ..      47     346 .. 0.78

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 6.6e-14
    TIGR02079   8 krlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdee.le...kgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekeg.ktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkaslkagevvtldkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaeP.aGalsiaaleels.eeikgktvvcvv 302
                  + + e++ +tP+ + +++  +  aei  k e ++   s k r    ++++  + +       ++v  ++Gn    +a    + g k  + mP      ++  +k fG +   +         a ++a++ +e+e+  +l++ f+++d  +  + t + ei eq e  k+d+++++vG GG  +G t ylk+  +  k++ veP+ +p l+      e+ t +ki     G     +G +  ++  +++de+++++ +    +  +l ++eg++    +Ga   aa+e  s  e kgk +vcv+
  MMETSP1174-20130828|33119_1  50 NDITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKRGdITpgvTTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLR-LTTAAGGMPGAVQKAEEIAETEEsGYLLQQFNNPDNPKvHRDTTGPEIWEQTEG-KVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPVLSGG----EAGT-HKIQ----GI---GAGFIPANMDTSLIDEIITIDSATSMRVSRELATEEGLLCGIsSGAAVAAAIEVGSrPENKGKRIVCVI 338
                  5689999***********************************999999777665414411145678899***99999999999************************9864.54455556778888999888665168899**9998765257899*******988.7************************************99988654....3322.3333....32...246666677777888888888888888888888888887764145555555554443566777888887 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.3e-11   3.1e-09      20     224 ..      56     255 ..      41     267 .. 0.82
   2 ?    1.6   0.0      0.11        27     282     331 ..     295     338 ..     275     344 .. 0.69

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 1.3e-11
    TIGR00260  20 egstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.....tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeife.dkeklklnsvNsinparieaqk.tyafeiveqlgkespdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadi 224
                   g+t+++r +k+  e  a ++ +k + + P  + KDr ++ +   +++a ++g       t++  tsG+tg a+a + a+ ++ k +  +P+  +s +    l+ a    +++    G    a +  +ei+e ++  ++l+  N  np   +    t   ei eq++  + d +v  v+ +g ++  ++  + ++ +   ++  a+++ ++ ++
  MMETSP1174-20130828|33119_1  56 IGKTPMLRLQKVVGECAA-EIVCKMECMEPCNSVKDRIGKAM---IEEAEKRGDItpgvtTLVEPTSGNTGIALA-MVAAAKGYKLILTMPES-MS-MeRRVLLKAFGADLRLTTAAGGMPGAVQKAEEIAEtEESGYLLQQFN--NPDNPKVHRdTTGPEIWEQTE-GKVDFLVAGVGtGGTLTGCTQYLKSLNPG---LKVVAVEPAES-PV 255
                  467899999999988888.9******************7766...555555555555576999************.****************9.88.5377789999*************************66669*******..******9999**********9.56789999999888888777654443333...34556666654.55 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.11
    TIGR00260 282 leaikklaeeegyllephtavavaalkklvekgvsatadpaKFeevveal 331
                  ++  ++la eeg+l+   +++avaa ++          +++K +++v+++
  MMETSP1174-20130828|33119_1 295 MRVSRELATEEGLLCGISSGAAVAAAIEVGSR------PENKGKRIVCVI 338
                  44567889999999999999999998765433......344446666655 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   1.0   2.2e-10   5.4e-08      11     201 ..      50     249 ..      44     340 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.2e-10
    TIGR02991  11 eriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsd.aeraaGv...vaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrs..qddaqeeverlvk.erGlvmlppfdhadi.vaGqGtlglevveqvp.dlalvlvplsGGGlasGvavavkalkpatrviGvs 201
                  + i+  + +tp+ + + +   +  ++  k+e  ++  s k r     +   ++ ++ + Gv   v  ++Gn G ala  a+++g + ++ m e + +++   ++ +Ga++r+   +     a ++ e + + e+   +l  f+++d     + t g e+ eq   +++ ++  +  GG  +G +  +k+l+p  +v+ v 
  MMETSP1174-20130828|33119_1  50 NDITELIGKTPMLRLQKVVGECAAEIVCKMECMEPCNSVKDRIGKAMIEEAEKrGDITPGVttlVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAggMPGAVQKAEEIAEtEESGYLLQQFNNPDNpKVHRDTTGPEIWEQTEgKVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVE 249
                  567778999*********************************887777655441344555511166789******************************************987651134677777776541445567889999886245789*********97256666667889********************9986 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0024      0.58     205     293 ..     177     260 ..      36     275 .. 0.72
   2 !    6.1   0.0    0.0036      0.86     348     412 ..     287     351 ..     271     357 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0024
    TIGR01415 205 ealeeedakyslGsvlnhv..llhqtviGleakkqleeagekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltkGe 293
                  e +e e++ y+l    n +   +h+   G e+ +q e +    d++v+ vG G   +g +  +++    G   lk++a+e+++ P l+ Ge
  MMETSP1174-20130828|33119_1 177 EIAETEESGYLLQQFNNPDnpKVHRDTTGPEIWEQTEGK---VDFLVAGVGTGGTLTGCTQ-YLKSLNPG---LKVVAVEPAESPVLSGGE 260
                  344444455665555543322467777788887776654...7899999998888888764.44443333...688999999999888876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0036
    TIGR01415 348 eaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlkay 412
                    +d  + ++ ++ +a  eG++    s  a+a+ai+  ++ +++gk+ v ++   G  +l  + y
  MMETSP1174-20130828|33119_1 287 ITIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPENKGKRIVCVIPSFGERYLSTQLY 351
                  4677888899999********************************99999998888888876666 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06    0.0007     118     186 ..     111     181 ..      79     187 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.9e-06
    TIGR03844 118 kvlvvasaGntgrafaevsaltgkpvvlvvPesa..vdrlwttedassvllvtvegdytdaiklaekiaal 186
                   +lv  ++Gntg a+a v+a  g+ ++l +Pes     r+ +    ++++l t  g    a++ ae+ia++
  MMETSP1174-20130828|33119_1 111 TTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMsmERRVLLKAFGADLRLTTAAGGMPGAVQKAEEIAET 181
                  45677789***********************9852145788889999*********************986 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   4.3e-05      0.01     166     304 ..     207     335 ..     203     342 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.3e-05
    TIGR01275 166 eiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsaLkeevesvgvavsrfs.addsdklvnlvkeileelevkvnseeivelddykgkgyavptseeleivkkvasleGiiLDPvytgkalaGlideirkkeleekkiL 304
                  ei eq  +e+  k+d +v  +G+gGt+ G +  l+ L++ ++ v v+   +      +  ++++++i  ++     + +   +d+      ++ +  ++ + +++a+ eG+ L  + +g a+a  i+  ++ e ++k+i+
  MMETSP1174-20130828|33119_1 207 EIWEQ--TEG--KVDFLVAGVGTGGTLTGCTQYLKSLNPGLKVVAVEPAESPvLSGGEAGTHKIQGIGAGFIPA--NMDTSLIDEII----TIDSATSMRVSRELATEEGL-LCGISSGAAVAAAIEVGSRPENKGKRIV 335
                  67777..454..8999**************************77665544432444455555666665555444..55566666654....46667788999999999996.5578899999999998888888888775 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.8e-05     0.011      95     170 ..     111     189 ..      91     194 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-05
    TIGR01747  95 atfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdln..yddavrlankmaqekg.wvlvq 170
                  +t+v  t Gn G  +a  a   G k ++ mp   ++er   ++  Ga+  +t        av+ a++ a++++ + l+q
  MMETSP1174-20130828|33119_1 111 TTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAggMPGAVQKAEEIAETEEsGYLLQ 189
                  678899******************************************9888765226688999999998887667776 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.4e-05     0.013     114     181 ..     111     180 ..      79     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.4e-05
    TIGR03528 114 itfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdln..yddavrlaakkae 181
                   t+v  t Gn G  +a  a   g k ++ mP   + er+  +++ Ga+  +t        av+ a++ ae
  MMETSP1174-20130828|33119_1 111 TTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRLTTAAggMPGAVQKAEEIAE 180
                  578999******************************************9888654115567777666555 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.7     0.024       5.9     202     260 ..     203     258 ..     108     296 .. 0.56
   2 ?    6.8   0.0    0.0028      0.68     321     376 ..     288     344 ..     270     350 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.024
    TIGR00263 202 vigeevkeqilekegrlPdaviacvGGGsnaiGifaafie..deeveligveagGkGidte 260
                    g e+ eq    eg++ d ++a vG G    G+ +++++  ++ +++++ve++ + + + 
  MMETSP1174-20130828|33119_1 203 TTGPEIWEQT---EGKV-DFLVAGVGTGGTLTGC-TQYLKslNPGLKVVAVEPAESPVLSG 258
                  4455555543...4565.9999999999988886.56777456779999999998766553 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0028
    TIGR00263 321 aitdeealealkllskeeGiipalesshalaaleklapklk.kdeivvvnlsGrGdk 376
                  +i+ + +++  + l+ eeG++  + s  a+aa++++ ++ + k + +v+ +   G++
  MMETSP1174-20130828|33119_1 288 TIDSATSMRVSRELATEEGLLCGISSGAAVAAAIEVGSRPEnKGKRIVCVIPSFGER 344
                  577788899999*********************999888765888888888777766 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00055      0.13       8      45 ..     145     183 ..     140     188 .. 0.77
   2 ?   -0.0   0.0         1   2.4e+02      14      32 ..     307     325 ..     305     332 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00055
    TIGR02811   8 dlsRRdLLkglavgaaagavaaatgrva.sasaaaepse 45 
                   + RR LLk++++      +a++ + ++ +a++ ae++e
  MMETSP1174-20130828|33119_1 145 SMERRVLLKAFGADLRLTTAAGGMPGAVqKAEEIAETEE 183
                  689*********999888888888887735666666665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1
    TIGR02811  14 LLkglavgaaagavaaatg 32 
                  LL g+  gaa +a++ + +
  MMETSP1174-20130828|33119_1 307 LLCGISSGAAVAAAIEVGS 325
                  6777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1088.91
//
Query:       MMETSP1174-20130828|33125_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.3   0.4      0.026   11.7   0.2    1.3  1  TIGR00162 TIGR00162: TIGR00162 family protein


Domain annotation for each model (and alignments):
>> TIGR00162  TIGR00162: TIGR00162 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   6.4e-06     0.026     216     254 ..      71     110 ..      46     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.4e-06
    TIGR00162 216 evdleeleerakemekliekikkleeemvkrakakp.see 254
                  e ++e +  +++e e +i++i+++   m++ ++ +p  +e
  MMETSP1174-20130828|33125_1  71 ENEVESIRLKTNEFEMIISQIQNFTLVMIQDTRPQPeEDE 110
                  678999999************************9994444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1174-20130828|33126_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-40  136.9  13.2    1.3e-40  136.5   9.2    1.1  1  TIGR00855 L12: ribosomal protein L7/L12
  ------ inclusion threshold ------
      0.061   11.6   2.3      0.086   11.1   0.1    2.0  2  TIGR03631 bact_S13: 30S ribosomal protein S13


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   9.2   6.3e-44   1.3e-40       2     125 .]      47     173 .]      46     173 .] 0.92

  Alignments for each domain:
  == domain 1    score: 136.5 bits;  conditional E-value: 6.3e-44
    TIGR00855   2 aklskeeiiealkeltvlelselvkalEekfgvsAaaav..aaaaaaaaa.aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvevk 125
                  +  + +ei+ +l++lt+le+selvk++Eekfgv A+a      +aa+aaa ae+aee+tEf+v+l+ ++adkkia++k+vr +tGlgLk+Ake+vekaP a+ke+ sk++Ae +kk++ee+G+kve+k
  MMETSP1174-20130828|33126_1  47 S-SAVDEIMVKLESLTLLEASELVKEIEEKFGVDASAGGggMMMAAPAAApAEEAEEQTEFNVMLTeVPADKKIAILKIVRAVTGLGLKDAKEVVEKAPVAVKEGASKDDAEGIKKQIEEVGGKVELK 173
                  5.56899****************************99872234556666689**************9***********************************************************97 PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.12   2.4e+02      38      65 ..      52      79 ..      34      82 .. 0.74
   2 ?   11.1   0.1   4.2e-05     0.086       5      58 ..     111     163 ..     107     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.12
    TIGR03631 38 dedkkvkdlteeelekirevieeeykve 65
                 +  +k+++lt  e++++ ++iee++ v+
  MMETSP1174-20130828|33126_1 52 EIMVKLESLTLLEASELVKEIEEKFGVD 79
                 4567888888889999999999988876 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 4.2e-05
    TIGR03631   5 vdipknkrvei..aLtyiyGigktrakkilekagidedkkvkdlteeelekirevi 58 
                   ++p++k++ i   ++++ G+g + ak+++eka ++ ++ +++ + e    i+++i
  MMETSP1174-20130828|33126_1 111 TEVPADKKIAIlkIVRAVTGLGLKDAKEVVEKAPVAVKEGASKDDAE---GIKKQI 163
                  58999999998334789*****************9988766554444...444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1174-20130828|33132_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-17   60.3   0.0    1.5e-16   58.8   0.0    1.7  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    2.7e-15   54.4   0.0    4.2e-15   53.7   0.0    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    2.2e-14   51.1   0.0    4.8e-14   50.0   0.0    1.6  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    5.8e-14   49.8   0.0    1.3e-13   48.7   0.0    1.6  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.8e-07   27.2   0.0    7.5e-07   26.6   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    1.4e-06   25.7   0.0    5.1e-06   23.8   0.0    2.0  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    1.9e-06   25.0   0.0    2.8e-06   24.4   0.0    1.2  1  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
    1.9e-06   25.4   0.0    2.7e-06   24.9   0.0    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW
    1.6e-05   21.8   0.0    2.2e-05   21.3   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    0.00017   19.7   0.0    0.00026   19.1   0.0    1.2  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00019   18.7   0.0    0.00031   18.0   0.0    1.3  1  TIGR00477 tehB: tellurite resistance protein TehB
    0.00026   18.4   0.0     0.0014   15.9   0.0    1.9  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0021   15.4   0.0     0.0038   14.6   0.0    1.5  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
     0.0042   14.0   0.3     0.0069   13.3   0.2    1.2  1  TIGR04039 MXAN_0977_Heme2: di-heme enzyme, MXAN_0977 family
     0.0061   13.7   0.0     0.0092   13.1   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0063   13.8   0.0      0.013   12.8   0.0    1.5  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0097   12.8   0.0      0.065   10.1   0.0    2.0  2  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.034   11.8   0.0      0.048   11.3   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
      0.047   12.0   0.0      0.085   11.2   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   6.8e-19   1.5e-16      29     170 ..     164     320 ..     139     334 .. 0.76

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 6.8e-19
    TIGR02072  29 ekr.kfepakvLdiGcGtGiltrallkr.fpqaelialDiseemleqakkkls.....nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgke.tlkEl.rqlfkqv......ea.hglrflsleelkallkke 170
                      +  pakvLd+GcG G ++r l+++  ++++++ + +s+++ ++a +  +     n qf+ +d+ k+++ ++sfD+++++ +   + d++  ++e+ rvlkpgG+++++t ++  +  E  +++           +    +f s++++ + lk++
  MMETSP1174-20130828|33132_1 164 LDAlESPPAKVLDVGCGIGGTSRYLASKlGNASHVTGITLSPNQVARATELATergltNTQFLVKDALKMDFPDNSFDMVWACESGEHMPDKKLYIEEMSRVLKPGGVFVMATWCQRdNSTEAfSKSEL-KkldyleAEwTHPHFISIKTYADHLKDT 320
                  333467899**************99876157788***************999999**********************************************************9975133332022111.1234444334666677777776666666 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.9e-17   4.2e-15      47     150 ..     172     275 ..     148     287 .. 0.93

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.9e-17
    TIGR02752  47 kkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcl 150
                  +k+ldv cg +  +  la ++g+  +v+g+ +s n ++ + e   ++ l+n +++  +a+++ ++dnsfd v        +pd    ++em rv+kpgg  v  
  MMETSP1174-20130828|33132_1 172 AKVLDVGCGIGGTSRYLASKLGNASHVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFPDNSFDMVWACESGEHMPDKKLYIEEMSRVLKPGGVFVMA 275
                  589************************************************************************999*********************98865 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.4   1.2e+03     136     166 ..      18      50 ..      13      54 .. 0.58
   2 !   50.0   0.0   2.2e-16   4.8e-14      32     156 ..     154     279 ..     142     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.4
    TIGR01983 136 lkecaellkpggilfl..stinrtlksyllaiv 166
                  l + +e   p+g   +  st+ r+ +s  + i+
  MMETSP1174-20130828|33132_1  18 LAQHVECFMPHGRFNFqqSTLHREHQSTSVQII 50 
                  445555555555443333677777777666665 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 2.2e-16
    TIGR01983  32 yikekikkklkknekkleglkvlDvGcGgGllseslarlgae...vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinr 156
                  +i++ ++   + ++ +    kvlDvGcG G  s  la +  +   vtgi ls ++++ A++ a++ +l++ ++ +k++ ++    ++sfD+v a E  EH++d +  ++e++++lkpgg+ +++t  +
  MMETSP1174-20130828|33132_1 154 FIDQMMAF-SDLDALESPPAKVLDVGCGIGGTSRYLASKLGNashVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFP-DNSFDMVWACESGEHMPDKKLYIEEMSRVLKPGGVFVMATWCQ 279
                  55444443.234444445789*********9***99975433367********************************9999665.678************************************9654 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   5.8e-16   1.3e-13      36     150 ..     167     283 ..     147     294 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 5.8e-16
    TIGR01934  36 eeekeekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpkna 150
                   e+ ++kvlDv +G G  +  la k +   +vtg+ ls++ ++ a++ a+e+  +n +f+++da ++ f+dnsfd+v        + d++  ++e+ RVlkpgg +v+    +++n+
  MMETSP1174-20130828|33132_1 167 LESPPAKVLDVGCGIGGTSRYLASKLGnaSHVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFPDNSFDMVWACESGEHMPDKKLYIEEMSRVLKPGGVFVMATWCQRDNS 283
                  455899*************999999888999******************9996689********************988877799*********************99888887764 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.5e-09   7.5e-07      55     136 ..     171     257 ..     121     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 3.5e-09
    TIGR02021  55 GkkvlDAGCGtGllsielAkr...GaivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavvalDvlihYpaedi 136
                    kvlD GCG G  s  lA +     +v+++ +s++ v+ a + a ++    n +F v d ++++   + fD+v a ++  h p++++
  MMETSP1174-20130828|33132_1 171 PAKVLDVGCGIGGTSRYLASKlgnASHVTGITLSPNQVARATELATERG-LTNTQFLVKDALKMDfpdNSFDMVWACESGEHMPDKKL 257
                  579****************75432579****************999999.69********8887666699******999999998875 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.4e-08   5.1e-06      19     132 ..     173     276 ..     153     348 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.4e-08
    TIGR00091  19 lvleiGcGkGrfliklAkqn.peknflGiEiekpivlkainkaeklglkNlkvlcgdakkllekfipkgslskvflnFpdPwfkkrhekrRivqpkflkevaevLkkgGvielkt 132
                   vl++GcG G     lA +  +   + Gi + +  v++a + a + gl+N + l  da   l+  +p++s  +v  + +  +   ++         +++e+ +vLk+gGv+ ++t
  MMETSP1174-20130828|33132_1 173 KVLDVGCGIGGTSRYLASKLgNASHVTGITLSPNQVARATELATERGLTNTQFLVKDA---LKMDFPDNSFDMVWACESGEHMPDKK--------LYIEEMSRVLKPGGVFVMAT 276
                  489*******99999988861556778*******************************...55557778******999999999998........68999999999999999998 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.3e-08   2.8e-06     206     293 ..     143     233 ..     134     243 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.3e-08
    TIGR02085 206 rpksffqtnpkvaaqlyatarqwvrelevkelwdlfcGvGGfglhca...apdikltGieieseaiaaakrsakelGlenlsfaaldsakf 293
                  + k+f+q+  +  +q+ a +     e ++ ++ d+ cG+GG + + a   ++  ++tGi ++++ +a a + a e Gl+n +f   d+ k+
  MMETSP1174-20130828|33132_1 143 KKKGFIQAKYDFIDQMMAFSDLDALESPPAKVLDVGCGIGGTSRYLAsklGNASHVTGITLSPNQVARATELATERGLTNTQFLVKDALKM 233
                  678999*************99999*********************997777899*****************************99999876 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.3e-08   2.7e-06      13     156 ..     170     318 ..     161     344 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.3e-08
    TIGR02081  13 agsrvLDlGcGdGeLLallrdekqveg..aGleideenvlac....varGveviqqdldegLea.fedksfDvvvlsqtlqavrnteeiLdellRvgrka.ivsfPnfgywrvrlslltkGrmPvteelpyeWyntPnihfltlaDfeelve 156
                  + ++vLD+GcG G   ++l+ +    +  +G+ ++ ++v+ +    ++rG++  q  +++ L++ f+d+sfD+v   ++   +   +  ++e+ Rv +   +     +  + + ++ ++k      + l+ eW      hf++++ + + ++
  MMETSP1174-20130828|33132_1 170 PPAKVLDVGCGIGGTSRYLASKLGNAShvTGITLSPNQVARAtelaTERGLTNTQFLVKDALKMdFPDNSFDMVWACESGEHMPDKKLYIEEMSRVLKPGgVFVMATWCQRDNSTEAFSKSELKKLDYLEAEWT---HPHFISIKTYADHLK 318
                  5679*********99999988765544448999999999875222268**************855*******************************98751445555555555555566555555555555554...345666655555555 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07   2.2e-05     259     350 ..     136     230 ..     117     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-07
    TIGR00479 259 gdvklelsardFfqvnseqteklvd.ralealelqgeekvvDaycGvGtftlplAkq...aksvvgvevvkesvekakrnAelngianveflagel 350
                  +++k+  + + F+q   +  +++++   l+ale ++  kv+D+ cG+G  + +lA++   a +v+g+   ++ v +a   A   g++n +fl++++
  MMETSP1174-20130828|33132_1 136 EEMKVGYKKKGFIQAKYDFIDQMMAfSDLDALE-SPPAKVLDVGCGIGGTSRYLASKlgnASHVTGITLSPNQVARATELATERGLTNTQFLVKDA 230
                  567777788889999888776666525567777.56679****************9644478899**************************98875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.2e-06   0.00026      15     121 ..     167     275 ..     157     277 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.2e-06
    TIGR02469  15 LrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgGsgkkl..kei.leaverrlrpggrivln 121
                  L+    +++lD+G+G G  +  +a  +++  +v++i  +++++   +e + + g+ n + + +da k++   ++ +d v    sg+++  k++ +e+++r+l+pgg+ v+ 
  MMETSP1174-20130828|33132_1 167 LESP-PAKVLDVGCGIGGTSRYLASKLGNaSHVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFP-DNSFDMVWACESGEHMpdKKLyIEEMSRVLKPGGVFVMA 275
                  4444.5689**************99999999***********99999999999999999999999866655.67899987766666652244449************9985 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06   0.00031      47     171 ..     143     271 ..     136     300 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.4e-06
    TIGR00477  47 kkedyfskkyeltathsevleavkv.vapcktldlGcGqGrnslylsl...aGydvdavdkneasiasveeikekenld.lrtavydinaaal.dedydfilstvvllfleaervpeiianmkehtkpGGy 171
                  kk+ + + ky+      +  +   +   p+k+ld+GcG G  s yl+    +   v+ +  +++ +a   e++++  l   +  v d   + + d+ +d++ +      +  +++   i++m +  kpGG 
  MMETSP1174-20130828|33132_1 143 KKKGFIQAKYDFIDQMMAFSDLDALeSPPAKVLDVGCGIGGTSRYLASklgNASHVTGITLSPNQVARATELATERGLTnTQFLVKDALKMDFpDNSFDMVWACESGEHMPDKKL--YIEEMSRVLKPGGV 271
                  677777788887776666665444413589****************86322456899999********99999888876355555565555553455666666554444444443..46677777777765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.6e-06    0.0014      87     160 ..     169     243 ..     155     245 .. 0.87
   2 ?   -0.4   0.0      0.65   1.4e+02     201     237 ..     258     293 ..     251     299 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 6.6e-06
    TIGR03534  87 keklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglkeveflksdllealeekgkfdli 160
                  ++++kvlD+g+G G     la++l +  +v+++ +s++ ++ a + a + gl++++fl  d l+   ++++fd++
  MMETSP1174-20130828|33132_1 169 SPPAKVLDVGCGIGGTSRYLASKLgNASHVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFPDNSFDMV 243
                  34589******************945568*********************************9876799999998 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.65
    TIGR03534 201 iaeeaakllkeggllllEigekqaeavaelleaagfk 237
                   +ee++++lk+gg++++   + q+++ +e ++++++k
  MMETSP1174-20130828|33132_1 258 YIEEMSRVLKPGGVFVMA-TWCQRDNSTEAFSKSELK 293
                  58999********99995.566666666666666655 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05    0.0038      27     103 ..     165     244 ..     141     278 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.8e-05
    TIGR00438  27 fklikkGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk..pienvdfirGdf.tdeevlekilervgddkvdvvi 103
                  + l  +  +vld+G+  GG s++ ++k+g+   v ++ l p +   + ++   rG   t+  v+++++   +d+  d+v 
  MMETSP1174-20130828|33132_1 165 DALESPPAKVLDVGCGIGGTSRYLASKLGNASHVTGITLSPNQvaRATELATERGLTnTQFLVKDALKMDFPDNSFDMVW 244
                  556667789*****************************987664477788888885414557889999999999988885 PP

>> TIGR04039  MXAN_0977_Heme2: di-heme enzyme, MXAN_0977 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   3.2e-05    0.0069     179     209 ..      17      47 ..      11      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.2e-05
    TIGR04039 179 FfsekleCfhChggfnFsdstvhekaseeea 209
                  F ++++eCf  hg fnF++st h++++++++
  MMETSP1174-20130828|33132_1  17 FLAQHVECFMPHGRFNFQQSTLHREHQSTSV 47 
                  8999*******************99877655 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.3e-05    0.0092      28      93 ..     169     239 ..     151     246 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.3e-05
    TIGR00755  28 eesdvvlEiGpGlGaLTeellek...akkvvaiEiDkrlaekLrkkle...leekleviegDalkldleefa 93 
                  +++ +vl +G+G+G  ++ l++k   a++v++i + ++ +++ ++ +    l++ + ++ +Dalk+d++++ 
  MMETSP1174-20130828|33132_1 169 SPPAKVLDVGCGIGGTSRYLASKlgnASHVTGITLSPNQVARATELATergLTNTQFLV-KDALKMDFPDNS 239
                  35889**********99999876222567*********999988887766455555555.5*******9654 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.1e-05     0.013     150     256 ..     161     273 ..     157     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.1e-05
    TIGR00406 150 lellesldlkdkkviDvGcGSGiLs..iaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen.leqkiegkaDvivaNilAevi..kell.sqivrLvkegGlli 256
                  +  l+ l+ +  kv+DvGcG G  s  +a ++ +a+ v+++ + p  v  a + +   +++++  +++   + +  ++ +D + a    e +  k+l+  +++r++k+gG ++
  MMETSP1174-20130828|33132_1 161 FSDLDALESPPAKVLDVGCGIGGTSryLASKLGNASHVTGITLSPNQVARATELATERGLTNTQFLVKDAlKMDFPDNSFDMVWACESGEHMpdKKLYiEEMSRVLKPGGVFV 273
                  566888999999********99888546777777999***********99998888888777665555544888889999988887666655334444245667777776665 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0003     0.065     107     185 ..     165     242 ..     154     245 .. 0.82
   2 ?    0.1   0.0      0.33        71     223     254 ..     255     285 ..     247     312 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0003
    TIGR00536 107 eslisqeplkhilDlgtGsGcIalalAleipnae.viavDistdalavaeeNaeklkleerveliqsnlleslakqkidl 185
                   +l+s +   ++lD+g+G G  +  lA+++ na+ v+++ +s++ +a a e a + +l +  +l++  l  +++ + +d+
  MMETSP1174-20130828|33132_1 165 DALESPP--AKVLDVGCGIGGTSRYLASKLGNAShVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFPDNSFDM 242
                  4444444..7********************98754************************988888887777777777777 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.33
    TIGR00536 223 lkkiieqakeylksngvlllEignsqqkelke 254
                   k +ie+++ +lk++gv+++     q  +  e
  MMETSP1174-20130828|33132_1 255 KKLYIEEMSRVLKPGGVFVMATW-CQRDNSTE 285
                  5779*************998544.33333333 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022     0.048      73     160 ..     167     253 ..     123     290 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00022
    TIGR00080  73 LelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegDGrkGfeekaPydailvtaaskeiP 160
                  Le ++ akvL++G+G G  +  la+ +g+   v +i   ++ v +a     + +l n +  + D  k   +   +d +    +++++P
  MMETSP1174-20130828|33132_1 167 LE-SPPAKVLDVGCGIGGTSRYLASKLGNASHVTGITLSPNQVARATELATERGLTNTQFLVKDALKMDFPDNSFDMVWACESGEHMP 253
                  32.4679*****************************9999888888877777777777777777666555555566666666665555 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039     0.085       2      51 ..     174     224 ..     173     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00039
    TIGR01444   2 viDiGAniGdvslvfaravae.grviafEPlpdllekleenvklnnlknvk 51 
                  v+D+G+ iG +s+++a + ++ ++v  +  +p+ +++++e +++ +l n +
  MMETSP1174-20130828|33132_1 174 VLDVGCGIGGTSRYLASKLGNaSHVTGITLSPNQVARATELATERGLTNTQ 224
                  89****************999899998888888888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1437.61
//
Query:       MMETSP1174-20130828|33133_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   16.7   0.0     0.0059   15.4   0.0    1.7  1  TIGR01445 intein_Nterm: intein N-terminal splicing region


Domain annotation for each model (and alignments):
>> TIGR01445  intein_Nterm: intein N-terminal splicing region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-06    0.0059       1      83 []      37     112 ..      37     112 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.4e-06
    TIGR01445   1 CltgdtkvlledGelikieelvekakekgednglikvlsldgeevikkksvavwkrkgeg...kliriktkngreitaTpdHkllt 83 
                  C++gd  v+le G+  ++ e+              ++ls d+ +  +   v++  ++ ++    ++++ t  g ++ aT++H ++t
  MMETSP1174-20130828|33133_1  37 CFSGDDVVTLESGQSMRFAEISVG----------DRILSADKAGNTHYSDVVFLPHEQNNkqaTFVEMSTSTGNKLCATKNHLIVT 112
                  **************9999999854..........4788888877777777775555544445478*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1174-20130828|33134_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|33129_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3194.74
//
Query:       MMETSP1174-20130828|33128_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   71.1  16.2    5.9e-14   49.6   7.8    3.3  2  TIGR00769 AAA: ADP/ATP carrier protein family
    0.00062   16.6  10.4    0.00062   16.6   7.2    2.0  2  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   7.8   2.9e-17   5.9e-14      15     349 ..      75     386 ..      66     401 .. 0.77
   2 !   19.5   0.2   3.9e-08     8e-05     384     463 ..     401     482 ..     391     488 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 2.9e-17
    TIGR00769  15 lffcilfnytilrdtkdtlvvtakgsgaevipflkvwvvvPsavivmliyaklsnvlskealfyaviapflvffalfavvlyPlsdllhpealadkllellpprlkgfiailrkWsfalfyvlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklraslsegvdawavslkalmvivvvsgliiillyrwinrnvllderlkkaalkekkakpklsakeslkflvsskyildlallviaygisinlve....vvWksklkeqyps.....kneysafmgefstltGvvsvllmlll.gnvlrkygWlvaalvtPlvllltGva 349
                   +f+i   y +lr++kd ++ t  g   + ip  k+   + +  +++ +y kl ++++ ++lfy+v  ++   f+++a+ l       hp+       e  p r++g i      s+++     e +gs+ +s lfW f n   ++++ak  y ++  ga +  i+  ++v+    + +    gv          ++   ++ +++ ++y   n+  + ++   + + ++kk k k ++ e lk +   +y++ +  +   + + + +++    v  k +  e+yp      + ++++fmg+f  +t   s+ + ll  + ++r+ g   + +  P+  +++ v 
  MMETSP1174-20130828|33128_1  75 TLFFIVGGYWLLRSLKDPVLATICGV--QYIPKAKIL-SLFVVTGFVTVYNKLIDMFPIHQLFYIVGCFYACAFTVLALAL------SHPTLG-VANTESSPYRVLGWI------SYCT----IESFGSIGVS-LFWAFCNSAMNLEQAKSAYGIIVAGAQIGAICGPTIVTT-LAEDF----GVPFCY------FCGAGCMMMMVFIVYLYTNKFGIQENSGSNGSANDKK-KKKGGVFEGLKLFWDHHYVKGIFAISCLFMVEVTILDytmkVLAKGEFDELYPDdpaaaTRAFATFMGRFGQATNTLSFSFSLLGtSFIIRRIGLNYTVIAFPTCCFIAVVS 386
                  5799999**********988887766..9***99986.45677899********************998877777766654......366543.333344455555554......5554....5899*****9.6*****************************997766654.44444....333222......2233333445566777889999999988888888888.8899*****************98888888888887761111555678889998622222578**********************999*******999999899988887654 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 3.9e-08
    TIGR00769 384 vlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgllvifgslaastpyla..villiivvvWla 463
                  +l k+  ysl +++ke+ y    +  k k+k  idv +ar  k+GG+l+ +++    + l     ++a  v  ++i v+W++
  MMETSP1174-20130828|33128_1 401 LLLKGFSYSLNNPCKEILYQATTKAVKFKAKSWIDVFGARGSKAGGSLVTNAFSDSAANLLTYGCFVAmgVSSFLIYVAWFM 482
                  4668999*******************************************99876666665554444411455777777876 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   7.2     3e-07   0.00062     286     397 ..     140     254 ..     109     255 .. 0.85
   2 ?   -2.8   1.5      0.24     5e+02     150     167 ..     465     482 ..     361     494 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3e-07
    TIGR00893 286 vlarktaiiaglvlsllliatnlvaskiaal...alvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsvll 397
                  + a++++++a++++   l+++n   s++ +l   +   +  fg+   ++ wa   + ++ e a+++ G+i + +++++i+gP ++  +a+  G+    +  ++ +++++ +++l+
  MMETSP1174-20130828|33128_1 140 FYACAFTVLALALSHPTLGVANTESSPYRVLgwiSYCTIESFGSIGVSLFWAFCNSAMNLEQAKSAYGIIVAGAQIGAICGPTIVTTLAEDFGVPFCYFCGAGCMMMMVFIVYLY 254
                  6799999999888888888888766666655111556788999977***********************************************8888888888888888888886 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.24
    TIGR00893 150 vFiieGvlaiilgvlilk 167
                   F+ +Gv ++++ v++++
  MMETSP1174-20130828|33128_1 465 CFVAMGVSSFLIYVAWFM 482
                  466777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.48
# Mc/sec: 1479.38
//
Query:       MMETSP1174-20130828|33147_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   45.0   0.0    1.2e-08   32.4   0.0    3.0  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00042       1.7      25      35 .]       1      11 [.       1      11 [. 0.93
   2 !   32.4   0.0     3e-12   1.2e-08       1      35 []      12      46 ..      12      46 .. 0.97
   3 !    2.9   0.0    0.0075        31       2      20 ..      48      66 ..      47      67 .] 0.85

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00042
    TIGR00756 25 eMkergivPda 35
                 eM+++g++P++
  MMETSP1174-20130828|33147_1  1 EMRRNGVKPNV 11
                 8********96 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 3e-12
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 +++n+ is++ k g++e A+ l++eM+ +g+ Pd+
  MMETSP1174-20130828|33147_1 12 ISFNAAISACEKGGKWERAIGLLQEMRQSGVQPDV 46
                 58*******************************96 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0075
    TIGR00756  2 tyntlisglckagrveeAl 20
                 ++++ is++ k +++  Al
  MMETSP1174-20130828|33147_1 48 SFSAAISACEKTKQWQIAL 66
                 8999********9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|33148_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-26   87.8   0.0    6.1e-10   36.5   0.0    4.0  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00034       1.4      23      35 .]       2      14 ..       2      14 .. 0.90
   2 !   12.1   0.0   8.7e-06     0.036       3      34 ..      17      48 ..      15      49 .. 0.90
   3 !   36.5   0.0   1.5e-13   6.1e-10       1      35 []      50      84 ..      50      84 .. 0.97
   4 !   27.5   0.0   1.1e-10   4.6e-07       1      34 [.      85     118 ..      85     119 .] 0.95

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00034
    TIGR00756 23 fdeMkergivPda 35
                 ++eM+++g+ P++
  MMETSP1174-20130828|33148_1  2 LQEMRRNGVQPNV 14
                 58*********96 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.7e-06
    TIGR00756  3 yntlisglckagrveeAlelfdeMkergivPd 34
                  n+ is++ k  ++e Al+l+  M+  g++Pd
  MMETSP1174-20130828|33148_1 17 VNAAISACEKGEQWETALDLLTNMRIIGLEPD 48
                 5999********************98888888 PP

  == domain 3    score: 36.5 bits;  conditional E-value: 1.5e-13
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 v++n+ is++ k g++e++le+++eM+e+g++Pd+
  MMETSP1174-20130828|33148_1 50 VSFNAAISACQKGGKWEKGLEILEEMRENGVSPDV 84
                 79*******************************96 PP

  == domain 4    score: 27.5 bits;  conditional E-value: 1.1e-10
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                  +++++ i ++ k+g++  Alelf +Mk++g++Pd
  MMETSP1174-20130828|33148_1  85 ISFSAAITACEKSGEWQRALELFGRMKRDGVRPD 118
                  589999***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 604.10
//
Query:       MMETSP1174-20130828|33145_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 795.82
//
Query:       MMETSP1174-20130828|33146_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 908.09
//
Query:       MMETSP1174-20130828|33149_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 877.73
//
Query:       MMETSP1174-20130828|33150_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   10.0   2.1       0.16   10.2   0.4    1.6  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.24   9.8e+02      20      34 ..      13      27 ..       7      36 .. 0.51
   2 ?   10.2   0.4   3.8e-05      0.16      20      40 ..      44      64 ..      40      70 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.24
    TIGR02811 20 vgaaagavaaatgrv 34
                 v+a   +v  + +rv
  MMETSP1174-20130828|33150_1 13 VAAFTPSVKPVHSRV 27
                 444444444444444 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 3.8e-05
    TIGR02811 20 vgaaagavaaatgrvasasaa 40
                 +ga+aga++aa + vasa++ 
  MMETSP1174-20130828|33150_1 44 IGAVAGAMIAANPMVASATEG 64
                 79***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 537.06
//
Query:       MMETSP1174-20130828|33209_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|33254_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 1685.40
//
Query:       MMETSP1174-20130828|33284_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-189  629.3   0.1   1.4e-189  629.0   0.0    1.1  1  TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type
    3.6e-88  294.4   0.1    4.8e-88  294.0   0.1    1.0  1  TIGR01504 glyox_carbo_lig: glyoxylate carboligase
    4.8e-73  244.3   0.0    6.1e-73  243.9   0.0    1.0  1  TIGR02418 acolac_catab: acetolactate synthase, catabolic
    5.7e-66  220.9   0.1    7.5e-66  220.5   0.1    1.1  1  TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
    8.9e-62  207.0   0.0    1.1e-61  206.7   0.0    1.0  1  TIGR02720 pyruv_oxi_spxB: pyruvate oxidase
    1.2e-52  177.3   0.0    1.5e-52  176.9   0.0    1.0  1  TIGR03254 oxalate_oxc: oxalyl-CoA decarboxylase
    1.8e-27   94.1   3.2    3.7e-25   86.4   2.2    2.9  1  TIGR03393 indolpyr_decarb: indolepyruvate decarboxylase
    2.6e-26   90.4   0.6      7e-26   88.9   0.4    1.7  1  TIGR03394 indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase
      1e-18   65.6   0.0    1.4e-18   65.2   0.0    1.1  1  TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
    1.5e-11   41.7   0.7    7.2e-11   39.5   0.2    2.2  3  TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
    9.2e-11   39.8   0.0    5.8e-09   33.9   0.0    2.5  2  TIGR03846 sulfopy_beta: sulfopyruvate decarboxylase, beta subunit
     0.0049   13.0   0.5        1.3    5.0   0.0    3.2  4  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00118  acolac_lg: acetolactate synthase, large subunit, biosynthetic type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  629.0   0.0  4.1e-192  1.4e-189       3     555 ..      78     652 ..      76     654 .. 0.93

  Alignments for each domain:
  == domain 1    score: 629.0 bits;  conditional E-value: 4.1e-192
    TIGR00118   3 gaeilveslkkegvetvfGyPGGavlpiydaly.dselehilvrheqaaahaadGyarasGkvGvvlatsGPGatnlvtgiatayldsvPlvvltGqvatsliGsdafqeidilGitlpvtkhsflvkkaedlpeilkeafeiastGrPGPvlvdlPkdvteaeieleve......ekvelpgykptvkghklqikkaleliekakkPvllvGgGviiaeaseelkelaerlkipvtttllGlGafpedhplalgmlGmhGtkeanlavseadlliavGarfddrvtgnlakfapeakiihididPaeigknvkvdipivGdakkvleellkklkee....ekkekeWlekieewkkeyilkldee..eesikPqkvikelskllkd......eaivttdvGqhqmwaaqfyktkkprkfitsgGlGtmGfGlPaalGakvakpeetvvavtGdgsfqmnlqelstiveydipvkivilnnellGmvkqWqelfyeerysetklase......lpdfvklaeayGvkgiriekpeeleeklkealeskepvlldvevdkeeevlPmvapGagldelve 555
                  g++ilv +l+  gv+t f yPGGa l+i+  l  +s ++ il rheq+ + aa+Gya+++GkvGv++atsGPGatnl+tgia+ay dsvPl+++tGqva+sliG ++fqe+ ++ + +p+tk ++++++ + ++ei+ ea+ +a +GrPGPvl+d+Pk+++++ +  + +       + +l   + + +   + ++++l+ i++a++P+l++GgG   a+a   l+e++er+ +pv++tl+GlG++p+  p+ lgmlGmhGt ++n+av++adll+a G+rfddrvtg++++fa++a+iih+d+dP+eigk+ +v+ ++v d+++ le+l + + +e     +k+ eW++k+ee  ++y+++++++  e++i+P + i +ls+++        +  vtt+vGqhqmwaaq++++++ r+f+tsgGlG mGfGlP+alGa va p++t+++++Gdgsfqmn+qel+t++  +++ k+vilnn++lGmv qW ++fy++r ++t l++        pdf+k++e+yGv ++r+ +++++ ++ +++l++ +p l+dv+ + +++v+Pm+++G+g ++++ 
  MMETSP1174-20130828|33284_1  78 GSDILVAALELAGVDTCFAYPGGASLEIHQSLIrSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRPGPVLIDFPKNIQQQRTVPSFStplnhfLNQDLVVERIKAELPDKPLRRILDKISEAERPLLYIGGGC--ANAAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGMLGMHGTVVSNYAVHNADLLLAFGVRFDDRVTGKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMADEemdnVNKHAEWMAKLEEKESKYPMHYKTKeiEGQIRPEYAIAKLSEIAAIeipdpkNLCVTTGVGQHQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGMVFQWENTFYKRRRAHTFLGNPdqpgviYPDFIKISEGYGVPALRVFNEADMIKAYEQMLRTPGPFLVDVVCA-DNHVYPMIPSGKGYEDIML 652
                  889****************************9978889***************************************************************************************************************************998765554334444556777788888888888*********************6..89999*******************************************************************************************************999988877765554445556************998766511577************987556668799************************************************************************************************************987322233369****************************************998.99************99985 PP

>> TIGR01504  glyox_carbo_lig: glyoxylate carboligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.0   0.1   1.4e-90   4.8e-88       8     549 ..      81     631 ..      76     634 .. 0.87

  Alignments for each domain:
  == domain 1    score: 294.0 bits;  conditional E-value: 1.4e-90
    TIGR01504   8 aavlvlekegittafgvpgaainplysalkarggirhvlarhvegashmaegytrakagnigvcigtsgpagtdmitglysaaadsipilcitgqaprarlhkedfqavdiaaiakpvaklavtvleaalvprvlqkafhlmrsgrpgpvlidlpvdvqvaeiefdidayeplavykp...aatrvqie.......kavellnaaerplivagggvinadaadllvefaeltgvpviptlmgwglipddhelmagmvglqtshrygnatllesdlvlgignrfanrhtgsvdvytkgrklvhvdieptqigrvlapdlgivsdakaalkllvevarelkaagrlpdrsewaaeaq..erkktlkrkthfddvpvkpqrvyeemnkafg......rdvtyvttiglsqiagaqllhvykdrhwincgqagplgwtvpaalgvaaadperqvvalsgdydfqflieelavgaqfkipyihvlvnnaylglirqaqrafdldyevslafeninssevagygvdhvkvaeglgckairvtkpeelaaaleqakklmaeyrvpvv 549
                    v  le  g+ t+f  pg a   ++ +l ++  i+ +l+rh +g    aegy+++ +g++gvci tsgp  t++itg+  a +ds+p+l itgq  ++ +  + fq + +  + +p++k a  + +   v +++ +a+ + rsgrpgpvlid+p ++q       +    pl+ +      + r+++e       + ++ + +aerpl+  ggg  n  aa  l ef e tg pv+ tlmg g++p     + gm+g+  +    n ++ ++dl+l  g rf +r tg+v+++++  +++hvd++p +ig++ a +  +v+d +  l+ l e+  +  +  +++++ ew+a+ +  e k  ++ kt+  +  ++p+    ++           ++ +  t +g  q+ +aq +    +r+++  g  g +g+ +p+alg a a p+++++ + gd  fq+ i+ela  a  k+    v++nn ylg++ q + +f    + +  + n +  + ++   d +k++eg g+ a+rv++  ++  a+eq  +    + v vv
  MMETSP1174-20130828|33284_1  81 ILVAALELAGVDTCFAYPGGASLEIHQSLIRSSLIKNILCRHEQGEVFAAEGYAKS-TGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRPGPVLIDFPKNIQQQRT--VPSFSTPLNHFLNqdlVVERIKAElpdkplrRILDKISEAERPLLYIGGGCAN--AAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGMLGMHGTV-VSNYAVHNADLLLAFGVRFDDRVTGKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMADE-EMDNVNKHAEWMAKLEekESKYPMHYKTKEIEGQIRPEYAIAKLSEIAAieipdpKNLCVTTGVGQHQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGMVFQWENTFYKRRRAHTFLGNPD--QPGVIYPDFIKISEGYGVPALRVFNEADMIKAYEQMLRTPGPFLVDVV 631
                  56788999*********************************************997.69************************************************************************************************99997654..34444555555331114566666544422226788999************866..57779**********************************9765.689999***********************************************************999986553.3456677778877665115688899***99999****99887776544311222256677888*********************************************************************************************965555554444443..3456678***************************98777666666665 PP

>> TIGR02418  acolac_catab: acetolactate synthase, catabolic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   0.0   1.8e-75   6.1e-73       1     528 [.      78     631 ..      78     638 .. 0.84

  Alignments for each domain:
  == domain 1    score: 243.9 bits;  conditional E-value: 1.8e-75
    TIGR02418   1 gadlvvdslenqgveyvfGiPGakidrlfdal.edkkielivvrheqnaafmaqavgrltGkpGvalvtsGPGvsnlvtGlltansegdpvvaigGqvkradklklthqsldnvallrpitkysaevqdvdalsevvanafrlaesgkkGaafvslPqdvvde...pvsvkaikavaap.....klgaa.adadidevieaikkaklpvlllGlkasseetveavrkllkktklpvvetfqgaGvvsreledeffGrvGlfrnqaGdkllkkadlvitiGy...dpieyepklWnkeldakivaidvekaeidknyqPklelvGdiastldllaerveelelae..dakdileelkqeleev.eevkadlksaelhPleiikalqeivt......ddvtvtvdvGshyiWlaryfksyearqllisnGmqtlGvalPWaisaallkPnekvvsvsGdGGflfssmeletavrlklnivhiiWndakynmvelqeekkykrssgvdf.Gp......v..dlvkyaesfGakGlrveskdeleevlkeameveGPvvvdiP 528
                  g+d++v +le  gv+  f  PG    ++ ++l + + i+ i  rheq  +f a++ ++ tGk Gv ++tsGPG++nl+tG++ a  ++ p++ai+Gqv ++     + q +  v l+rpitk +  ++d ++++e+v +a+ +a+sg++G  ++ +P+++ ++   p+ ++ ++   +      +++a+ +d+ +  ++++i +a++p+l +G  +   +++ a+r+++++t lpvv+t+ g G++      + +G +G+    + +  +++adl+++ G    d +  + +++ +  +a+i+++dv + ei k    ++ lv d+ + l+ l+e +++ e+ +  ++++ +++l+++ ++   ++k++  + ++ P   i +l ei        +++ vt+ vG h++W a++f+  + r++l s G   +G +lP a++aa+  P++ ++ + GdG f +  +el t    kln+  +i n++   mv   e+  ykr  +  f G+      +  d++k +e +G   lrv ++ ++ ++ ++   + GP +vd+ 
  MMETSP1174-20130828|33284_1  78 GSDILVAALELAGVDTCFAYPGGASLEIHQSLiRSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRPGPVLIDFPKNIQQQrtvPSFSTPLNHFLNQdlvveRIKAElPDKPLRRILDKISEAERPLLYIGGGC--ANAAPALREFVERTGLPVVQTLMGLGTMPAS-SPQNLGMLGMHGTVVSNYAVHNADLLLAFGVrfdDRVTGKVEQFAR--HAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMADEEMDNvnKHAEWMAKLEEKESKYpMHYKTKEIEGQIRPEYAIAKLSEIAAieipdpKNLCVTTGVGQHQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGMVFQWENTFYKRRRAHTFlGNpdqpgvIypDFIKISEGYGVPALRVFNEADMIKAYEQMLRTPGPFLVDVV 631
                  689******************98777788776155668**************************************************************************************************************************9985322233334333332011113333237889******************9655..56789**********************9876.56779***********************995223345555555554..59*************************************9988865115566677776554443134444444555889888888777643222222578999***************99*****************************************************************9999***999999***887777665523333246689*************************************85 PP

>> TIGR03457  sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5   0.1   2.2e-68   7.5e-66       5     542 ..      79     621 ..      76     640 .. 0.87

  Alignments for each domain:
  == domain 1    score: 220.5 bits;  conditional E-value: 2.2e-68
    TIGR03457   5 seafvevlvaeGvtevfGilGsafmdvld.lfakaGirliavvheqgaghmadgyarvtGkasvviGqnGPGvtnlvtaiaaaywahtPlvivtPeagtktiGlgGfqeadqlalfeeltkyqeevrdPsriaevlarvfekalael.gPaqlniPrdyfygeieveiprpdrle..........rgaGgatslaeaaellaeakfPviisGaGvviadaveevkalaekldaPvvnsylhndsfPashelwvGPlGyqGskaamkllsdadvvlalGtrlspfgtlPqygidywPknakiiqvdvdakrlGlvkkvtvgiiGdakaaaaellkrleakagdakraerkakiqeersawlkeleemaherddfsldliveqekeegnrlsPrqvlrelekvlPedaivstdiGnvasvansylkfekprkflaalsfGncGyafpaiiGakvaaPdrPvvayaGdGawGlslseistavredlPvtavvfrnrqwgaekknqvdfynrrfvatelese....l...sfakvaealGakGvvvdkledvaealkkaie 542
                  s+ +v  l   Gv+  f   G a +++   l  ++ i+ i ++heqg    a+gya+ tGk++v+i   GPG tnl+t ia ay    Pl+ +t + +++ iGl+ fqe+  + l + +tk+   ++d + +ae++  ++  a++++ gP+ ++ P++   ++       p ++           ++   ++ l +  + ++ea+ P++  G+G   a+a    +++ e+ + Pvv++ +   + Pas +   G lG +G+  + + + +ad++la+G r++   t     ++ + ++a+ii vdvd+k++G+ k v  +++ d      +ll+rl+ +++d +     ++++ ++++w+ +lee + +         +e + ++   +     + ++e   P++  v+t +G     a  +++fe  r+fl++   G+ G+++p+ +Ga va Pd  ++ + GdG++ + ++e++t++ e+l   +v+++n+  g   + +  fy+rr   t l ++    +    f+k++e++G+  ++v + +d+ +a+++ + 
  MMETSP1174-20130828|33284_1  79 SDILVAALELAGVDTCFAYPGGASLEIHQsLIRSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRpGPVLIDFPKNIQQQRTVPSFSTPLNHFlnqdlvveriKAELPDKPLRRILDKISEAERPLLYIGGGC--ANAAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGMLGMHGTVVSNYAVHNADLLLAFGVRFDDRVT---GKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVN----QLLERLNEMMADEE----MDNVN-KHAEWMAKLEEKESKYPMHYKTKEIEGQIRPEYAIAKLSEIAAIEIPDPKNLCVTTGVGQHQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGMVFQWENTFYKRRRAHTFLGNPdqpgViypDFIKISEGYGVPALRVFNEADMIKAYEQMLR 621
                  677899999***************999752788889**************************************************************************************************999999999988659*********999887655554433222355666644445557889999999************996..7888889999*****************************************************887666...57999****************************9975....78899999866644....44554.5789*****999854443333444555666677788888889999999*********************************************************************************************************997777775542222333369**********************9999875 PP

>> TIGR02720  pyruv_oxi_spxB: pyruvate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   3.3e-64   1.1e-61       2     537 ..      79     638 ..      78     641 .. 0.83

  Alignments for each domain:
  == domain 1    score: 206.7 bits;  conditional E-value: 3.3e-64
    TIGR02720   2 saavlkvleaWgvdhiyGlpgGslnslmdalaeerdrlkyiqvrheevGalaaaadakltGkiGvafGsaGPGavhllnGlydakedhvPvlalvgqvatkelnmdafqelneePiyddvavynrtvvtaeslPkvideairaaya.kkGvavveiPvdfgyqe.iednsyyaasvseksv....llPaldeeevkkvvkllkaakrPviyvGvGarkageelkalseklkvPlistvlakgiieddyeaylGsayrvaskpanevlaeadlvlfvGnnyp...faevlkafkntkkiqididpeklGkrhkldvavladakkalkailakv.....eeresspyyqaavadkknWrkylakle.dktegplqleqvydainkeae......ddavysidvGdvtinserllkltpkqklltsalfatmGvgvPgaiaaklnyPdrqvfnlaGdGafsmvmedlltevkydlpvinivfsneelgfikdeq.....edsekdliGv.d...ltdadfakiaegvgvkgfrvekieelkavleeakkelkedkpvlidakitdkrpl 537
                  s+ ++  le  gvd+ + +pgG+   + ++l      +k i  rhe+   +aa   ak tGk+Gv++ ++GPGa++l+ G+ da  d vP+la+ gqva+  + ++ fqe+    +   ++     +   +s+ +++ ea+  a + + G+ +++ P+++  q+ ++  s       ++      +  +l ++ ++++++ + +a+rP++y+G G+ +a+  l++  e+  +P++ t +  g ++ + + +lG  +  ++  +n ++ +adl+l  G  +      +v +  ++++ i +d+dp+ +Gk  +++ ++ ad ++ l+++++       +++++ + + a + +k+   ky  +++ ++ eg++++e    ++ ++a+      ++   +  vG+ ++ + ++++++ ++++lts+    mG+g+P+a+ a +  Pd  + ++ GdG+f+m +++l+t    +l+   +++ n+ lg++ + +         + ++G  d   ++  df ki+eg+gv ++rv + +++ +++e+     ++  p l+d++ +d++ +
  MMETSP1174-20130828|33284_1  79 SDILVAALELAGVDTCFAYPGGASLEIHQSLIRSSL-IKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSgRPGPVLIDFPKNIQQQRtVPSFSTPLNHFLNQDLvverIKAELPDKPLRRILDKISEAERPLLYIGGGCANAAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGMLGMHGTVVSNYAVHNADLLLAFGVRFDdrvTGKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMadeemDNVNKHAEWMAKLEEKES--KYPMHYKtKEIEGQIRPEYAIAKLSEIAAieipdpKNLCVTTGVGQHQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGMVFQWEntfykRRRAHTFLGNpDqpgVIYPDFIKISEGYGVPALRVFNEADMIKAYEQML---RTPGPFLVDVVCADNHVY 638
                  6778889999************99999999998776.**************************************************************************99999999999888999999**********999873569**********988624443333333333333011144567778999*********************************************************************************87752225677777788999****************************999875411111445566778877766553..4544444045689999988888888777533332234567889******************************************************************99999**9999999999998855430112222334566643222255679*************************9987...899999999998887655 PP

>> TIGR03254  oxalate_oxc: oxalyl-CoA decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   4.3e-55   1.5e-52       5     538 ..      78     633 ..      74     638 .. 0.83

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 4.3e-55
    TIGR03254   5 GlhlvidalklngietiygvvGipvtdlar.laqaeGlryigfrheqsageaaaaaGfltqkpGvcltvsapGflnGltalanattncfplilisGssereivdlqrGdyeeldqlavakpfakaayrvsraedlGialarairaavsGrpGGvyldlpakvlge.vleaeka.kkslvk...vvdpapkqlpspdsvdravellkdakrplillGkGaayaqadeeirelvektgipflpmsmakGllpdthpqsaa.......aarslvlkeadvvllvGarlnwllshGkakswaedakfiqvdieateldsnrkiaapvvGdiasvveallekvknd...tvkapaewlnalkakkeknvaklaek.lsaeksplnyysalealkdvlkdnpdiylvneGantldl.arnvidmykprkrldvGtwGvmGiGmGyaiaaavet.gkpvvaleGdsafGfsGmeveticrynlpvvvvilnnd..GiyrGddvnssgadpaptvlvk....k...arydklieafgGvgynvttpdelkaaleealesgkptlidavid 538
                  G  +++ al+l g++t ++ +G    ++ + l + + ++ i  rheq  + aa +    t k Gvc++ s pG  n +t +a+a  ++ pl+ i+G   + ++ l+   ++e+  +++ +p +k ay ++  + +   +  a+ +a sGrpG v +d+p ++  + ++ +  +  + +++   vv+   ++lp  + + r ++ + +a+rpl+ +G G+a   a   +re+ve+tg+p +   m  G +p ++pq  +           +++++ad++l  G r++  +  Gk +++a  a+ i vd++++e+   ++++  +v d++  +e l+e ++++    v+  aew+ +l++k+ k    ++ k ++ +  p    + l+ +  +   +p+   v+ G    ++ a +  +    r+ l +G  G mG G+  a++aav   +  ++ + Gd +f ++  e+ t+   +l   +vilnn+  G+    +    +   a t l +    +     + k++e +g  + +v + +++ +a e+ l++  p l+d+v  
  MMETSP1174-20130828|33284_1  78 GSDILVAALELAGVDTCFAYPGGASLEIHQsLIRSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLN--SFQEMPVVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRPGPVLIDFPKNIQQQrTVPSFSTpLNHFLNqdlVVERIKAELPD-KPLRRILDKISEAERPLLYIGGGCAN--AAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGmlgmhgtVVSNYAVHNADLLLAFGVRFDDRV-TGKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMADEemdNVNKHAEWMAKLEEKESKYPMHYKTKeIEGQIRPEYAIAKLSEIAAIEIPDPKNLCVTTGVGQHQMwAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALpDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQylGMVFQWENTFYKRRRAHTFLGNpdqpGviyPDFIKISEGYGVPALRVFNEADMIKAYEQMLRTPGPFLVDVVCA 633
                  8899*****************9887777652788999***************9999999**********************************************8..599**************************************************988724433333122222224488899999995.789******************99975..5679***************************97542211111456799**************9876.699****************************************999988751115678899*****999998877765441666666766678899999999999999999999877664388999*****************************972557899*******************************8333322223344445556666543111120003455677777777889999*********************9875 PP

>> TIGR03393  indolpyr_decarb: indolepyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   2.2   1.1e-27   3.7e-25       4     459 ..      79     557 ..      77     562 .. 0.69

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 1.1e-27
    TIGR03393   4 gdylldrlteiGikhlfGvpGdynlqfldrviaspdiswvGcanelnaayaadGyarckg.aaallttfGvGelsainGiaGsyaeylpvihivgapataaqrrGellhhtlGdGdfrhf..irmaaevtvaqavltaenataeidrvitealrerrpg..ylllpvdvaakavta.paqalvth.kpahadaalra......fraaaedllakakrvslladflalrfslksalqklleksplahatllmGkGvldeqqagfvGtysGsasagavkeaiedadavicvGvrftdtitaGfthqlaieklidvqptaarvGnevfas..v..pmadaieeleklte........kfgsrwdsaaaipaaqpaesravlsqeefwqalqrflrpg..................diilad.qGt.safGaaalrlpadvqlivqplwGsiGytlaaafGaqtaeperrvilliGdGsaqltiqelGsllrdkqrliilvlnne 459
                  +d l+  l+  G++  f  pG   l++ + +i+s  i  + c  e    +aa+Gya+  g ++  ++t G G    i Gia +y + +p++ i+g  a             +G   f+ +  + +  ++t    ++t  n++aei    + + r  rpg   + +p ++ ++   +  + +l+   ++    ++++a      +r    d++++a+r  l         + + al++++e++ l+    lmG G++    +   G       +   + a+ +ad +++ Gvrf d +t    +    ++ i+v+    ++G+ +  +  +   +++ +e l++++         k         a  +a+ +e+ +    +   +++++ +rp+                  ++ ++   G    + a ++ + ++ +++     Gs+G+ l++a+Ga +a p+  +i + GdGs q+ iqel ++  +k++  +++lnn+
  MMETSP1174-20130828|33284_1  79 SDILVAALELAGVDTCFAYPGGASLEIHQSLIRSSLIKNILCRHEQGEVFAAEGYAKSTGkVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVA----------QSLIGLNSFQEMpvVDLVRPITKKAYMITDINSVAEIVLEAMFVARSGRPGpvLIDFPKNIQQQRTVPsFSTPLNHFlNQDLVVERIKAelpdkpLRR-ILDKISEAERPLLYIG--GGCANAAPALREFVERTGLPVVQTLMGLGTMPASSPQNLGMLG-MHGTVVSNYAVHNADLLLAFGVRFDDRVTGKVEQFARHAHIIHVDVDPKEIGKIKAVQqsLvaDVNQLLERLNEMMAdeemdnvnK--------HAEWMAKLEEKESKYPMHYKTKEIEGQIRPEyaiaklseiaaieipdpkNLCVTTgVGQhQMWAAQHFNFESERRFLTSGGLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQ 557
                  5889999999***********************************************998357789*************************9986433..........3345666777642278899*****************95555555556676611555678887665444145677532122222233444111000222.3355666666555433..445677899**********************999998888764.3334444667999**************98665555555666655555555555443330021135666777777665332332221........33333333444444444444455555555541111111000000000114544431343134667789999*****************************************************************97 PP

>> TIGR03394  indol_phenyl_DC: indolepyruvate/phenylpyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.4   2.1e-28     7e-26       5     472 ..      81     570 ..      78     639 .. 0.74

  Alignments for each domain:
  == domain 1    score: 88.9 bits;  conditional E-value: 2.1e-28
    TIGR03394   5 alldalkdrgakevfgipgdfalpffkvieetgilplvtlshepavgfaadaaaryrgslgvaavtygagalnlvnaiagayaekspvvvisgapgtregtaglllhhqartldsqlrvfkevtvdqavlddpatapaeiarvlrsal.elsrpvyleiprdlvdakvepvpkla.....ase.....vdadaldacaeevldrvrsaaspvlvvdvevrrygvedkvaelaerlgvpvvttfmgrglladadsvlegtylgvagdeelselveesdgllllgvilsdtnfavssskldrrrtvhaedrevrvgyhvyrdiplaalvdalla..........................sasglppddravrgkglaayprgltadaediapsdiaaavndlfdr.hgkmplaadigdclftalevddialvapgyyagmgfgvpagvgvqits.gkrslvlvgdgafqmtglelgnckrlgidpivvlfnnaswemlrvfqpesafn 472
                   l+ al   g    f  pg  +l   + +  ++++  +   he    faa+  a+  g +gv + t g ga nl+  ia+ay +  p++ i+g     +   gl    +   +d    + + +t +  ++ d     + +   +  a+     pv +++p+++ + +  p  + +     +++     + a+  d+  + +ld++ +a+ p+l ++           + e+ er g+pvv t+mg g +  + s+ +   lg+ g      +v ++d+ll +gv + d   +  ++   + +++h      ++g     +  l a v++ll+                          + s+ p + ++    + ++ p    a  ++ia  +i    n  ++   g+  + a         +e  +  +++ g   +mgfg+p+ +g++++  +  ++ + gdg+fqm   el       ++  +v++nn    m  vfq e +f 
  MMETSP1174-20130828|33284_1  81 ILVAALELAGVDTCFAYPGGASLEIHQSLIRSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVA--QSLIGLNSFQEMPVVD----LVRPITKKAYMITDINSVAEIVLEAMFVARsGRPGPVLIDFPKNIQQQRTVPSFSTPlnhflNQDlvverIKAELPDKPLRRILDKISEAERPLLYIGGGCAN--AAPALREFVERTGLPVVQTLMGLGTMPAS-SPQNLGMLGMHGTVVSNYAVHNADLLLAFGVRFDDRVTGKVEQFARHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLErlnemmadeemdnvnkhaewmakleeKESKYPMHYKTK-EIEGQIRPEYAIAKLSEIAAIEIPDPKNLCVTTgVGQHQMWAA----QHFNFE-SERRFLTSGGLGSMGFGLPSALGAAVALpDATIIDIDGDGSFQMNIQELATVAIEKLNTKMVILNNQYLGM--VFQWENTFY 570
                  68899999*****************999999999999999****************************************************9754..5567777766666666....667788777777777666555555444443156789*********9988776544441111132211111445556778899***************988765..45678899****************99877.6777778*******999*******************999999999999999999999999998888888888888888888889999999866666666665553333333333333.3333356666666666666666666555554321344444221....122233.34567888999**************998567777799*****************************98887..677776664 PP

>> TIGR00173  menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0     4e-21   1.4e-18       5     357 ..      81     435 ..      78     472 .. 0.84

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 4e-21
    TIGR00173   5 alveeLvrlGvrevvisPGSRstPLalalaeheklkvhvhiDERsaaFfALGlakasgrPvalvcTSGTAvanllPAvvEAklsrvpLivLtADRPpeLrgcganQtidQeklfgsyvraslelpepeaeeeleylrstveealaealkappgpvHlNvpfrePlvpe..eleaeeqewekeeaatkvakeekeldeesveelaeeleqkkrgliiaGelageeeaealaalaealgwplladplSglrngekl....lviesydlllaeeelkeelkpdlvirfGgslvskrlkqllke.aeaevilvdprgerldplhkattvleasvaefaealaealkekkae.......wleewleaeekar 357
                   lv +L  +Gv++    PG  s  +   l + + +k +++  E +  F A G+ak++g++ + + TSG  + nl+  ++ A+ ++vpL+ +t    + L+g ++ Q +   +l   ++++++ +   +      ++++ v ea+  a + +pgpv +++p +     +  +++++ +++ +++    v + ++el+++ ++++ +++++++r+l+ +G   + ++a al+++ e++g+p++   +   +  +++     ++    +++++ +++   ++dl++ fG ++  +   ++ +  ++a+ i+vd +++ + +++++++ l a+v++++e+l e +++++ +       w+ +++e e+k+ 
  MMETSP1174-20130828|33284_1  81 ILVAALELAGVDTCFAYPGGASLEIHQSLIRSSLIKNILCRHEQGEVFAAEGYAKSTGKVGVCIATSGPGATNLITGIADAYCDSVPLLAITGQVAQSLIGLNSFQEMPVVDLVRPITKKAYMITDIN------SVAEIVLEAMFVARSGRPGPVLIDFPKNIQQQRTvpSFSTPLNHFLNQD--LVVERIKAELPDKPLRRILDKISEAERPLLYIGGGCA-NAAPALREFVERTGLPVVQTLMGLGTMPASSpqnlGMLGMHGTVVSNYAVH---NADLLLAFGVRFDDRVTGKVEQFaRHAHIIHVDVDPKEIGKIKAVQQSLVADVNQLLERLNEMMADEEMDnvnkhaeWMAKLEEKESKYP 435
                  78999*****************************************************************************************************************9999884433......5667999999999999********9965433333449999999998875..5566667778889999*****************9999.89***************9987765444444433333344445555555554...8**************99999999889999*********************************9999988766666666666666665554 PP

>> TIGR03297  Ppyr-DeCO2ase: phosphonopyruvate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.41   1.4e+02      34      88 ..     122     174 ..     102     208 .. 0.78
   2 !   39.5   0.2   2.1e-13   7.2e-11     170     276 ..     446     557 ..     315     562 .. 0.72
   3 ?   -2.6   0.0       1.3   4.6e+02     299     337 ..     598     635 ..     591     637 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.41
    TIGR03297  34 nEGaAvglaaGaylatgkravvymqnsGlGnavnPllsLadkevyeiPllllvgw 88 
                   E   v  a G++ +tgk++v  +  sG G a n ++ +ad    ++Pll++ g 
  MMETSP1174-20130828|33284_1 122 HEQGEVFAAEGYAKSTGKVGVC-IATSGPG-ATNLITGIADAYCDSVPLLAITGQ 174
                  5555566788999999998755.5679988.569999999999999999998775 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 2.1e-13
    TIGR03297 170 lltReealeaile....eleenavivsttGklsRElyelrdkkgeghardflt...vGsmGhasaialGlalakpdkkvvvlDGDGAalmhlGglatigkqspknliHvlldng 276
                   ++ e a++++ e    e+++ + +  ttG+    +++ +  + e+ +r+flt    GsmG     alG a a pd +++ +DGDG + m++  lat++  +  n   v+l+n+
  MMETSP1174-20130828|33284_1 446 QIRPEYAIAKLSEiaaiEIPDPKNLCVTTGVGQHQMWAAQHFNFES-ERRFLTsggLGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVA-IEKLNTKMVILNNQ 557
                  333444444432211126778899999************9997666.667777233479****************************************.888999******97 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.3
    TIGR03297 299 acGYakalevstleelesalkkaksaegpalievkvrkg 337
                  + G   al+v ++  + +a +++ ++ gp l++v ++ +
  MMETSP1174-20130828|33284_1 598 GYGV-PALRVFNEADMIKAYEQMLRTPGPFLVDVVCADN 635
                  3333.3556666677778999************999865 PP

>> TIGR03846  sulfopy_beta: sulfopyruvate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.7e-11   5.8e-09      41     100 ..     501     559 ..     490     569 .. 0.91
   2 ?    2.9   0.0     0.058        20     109     167 ..     585     642 ..     572     647 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.7e-11
    TIGR03846  41 lGsmglassiglGlalasedrkvividGDGsllmnlgvLatiaaekpknlilvllDngay 100
                  lGsmg   + +lG a+a +d ++i idGDGs  mn+ +Lat+a ek  n  +v+l+n+  
  MMETSP1174-20130828|33284_1 501 LGSMGFGLPSALGAAVALPDATIIDIDGDGSFQMNIQELATVAIEKL-NTKMVILNNQYL 559
                  79*****************************************9986.678888888765 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.058
    TIGR03846 109 aasklvdlelvakaaGieevakvadeeeleeal.kalaekgtsfihvkvkpgnakvpvid 167
                  +   + d+ ++++++G+  + +v +e ++ +a+ ++l++ g+ ++   v ++n+  p+i+
  MMETSP1174-20130828|33284_1 585 PGVIYPDFIKISEGYGVPAL-RVFNEADMIKAYeQMLRTPGPFLV-DVVCADNHVYPMIP 642
                  55555688999********9.999*********566666666555.55678899999887 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011       3.7      14      60 ..      84     131 ..      76     146 .. 0.74
   2 ?   -0.3   0.0      0.16        54     158     242 ..     193     295 ..     182     332 .. 0.67
   3 ?   -2.3   0.1      0.66   2.2e+02     252     293 ..     375     419 ..     360     463 .. 0.64
   4 !    5.0   0.0    0.0038       1.3     404     463 ..     503     561 ..     497     574 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
    TIGR03336  14 gale.agvevaaaYPGtPsseiidtlakvaeragvyvefsvnekvale 60 
                  +ale agv+   aYPG  s ei ++l + +   ++ + +   e  a e
  MMETSP1174-20130828|33284_1  84 AALElAGVDTCFAYPGGASLEIHQSLIRSSLIKNILCRHEQGEVFAAE 131
                  4455489*******************9987777777666666666655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.16
    TIGR03336 158 ilrtttrishsksdve.lgeivke...........ekvkkfekdieryvvvPalarvrhkkllek..ieklreeleesplnel..evkeakigv..iasGiay 242
                  ++r+ t+ +++  d++ + eiv e           ++  +f k+i++  +vP+++ +  + l++   +e+++ el + pl ++  +++ea+  +  i++G a 
  MMETSP1174-20130828|33284_1 193 LVRPITKKAYMITDINsVAEIVLEamfvarsgrpgPVLIDFPKNIQQQRTVPSFSTPLNHFLNQDlvVERIKAELPDKPLRRIldKISEAERPLlyIGGGCAN 295
                  5777777777777765355666556666677776677889***************999999998633588999999999988865555554444114555443 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.66
    TIGR03336 252 lgvevsvlkiGlayPlpeelv...eeflekveevlvveelepvve 293
                  + v+v+   iG    +++ lv   +++le+++e++  ee++ v  
  MMETSP1174-20130828|33284_1 375 IHVDVDPKEIGKIKAVQQSLVadvNQLLERLNEMMADEEMDNVNK 419
                  456666666676667777765111456667777777777777644 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.0038
    TIGR03336 404 cmGasigvasGlskakekkrivatiGDstffhaGlpsLinavynkanivvviLDnritam 463
                  +mG ++  a G + a  + +i+ + GD  f    ++ L+ +  +k n  +viL+n+   m
  MMETSP1174-20130828|33284_1 503 SMGFGLPSALGAAVALPDATIIDIDGDGSF-QMNIQELATVAIEKLNTKMVILNNQYLGM 561
                  7999***********************997.678*********************98777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.81u 0.22s 00:00:01.03 Elapsed: 00:00:00.73
# Mc/sec: 1218.64
//
Query:       MMETSP1174-20130828|33289_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-20   71.7   2.2    1.6e-20   71.7   1.5    2.2  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.7e-14   51.0   1.7    2.9e-14   50.2   1.2    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   1.5   7.6e-24   1.6e-20       3      73 ..      52     121 ..      50     174 .. 0.88
   2 !    2.4   0.3    0.0085        17      51     141 ..     185     276 ..     179     288 .. 0.63

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 7.6e-24
    TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghaglegg 73 
                  Y +L+v+k+A+e eikk+Yr+lak +HPD+n+ ++ea++kf  i++Aye + +ee r+ YD++ ++  e  
  MMETSP1174-20130828|33289_1  52 YAVLEVKKTANETEIKKSYRSLAKFWHPDKND-DPEAQKKFNAIAKAYETIGNEEGRKIYDHMVKNPSEYF 121
                  9*******************************.*****************************998876653 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0085
    TIGR02349  51 evLsdeek.raqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr.rskarrgedlevelelsleeavkGvekeiele 141
                  e+L+ ++k +++Y q  +a+ ++++ +  ++ +++ + +  ++++ fe++ ++++ s+   +s+ ++ + l+  l   l ++  G++++i l 
  MMETSP1174-20130828|33289_1 185 EILEHHKKaKEKYQQQLQAQKNEKGSS-VKRPKKQLSMKALKTDKEFEKVVQEHIFSEGLaSSELQKPSVLNGFLIKGLANSSAGMQVQIALA 276
                  788877764678999888877776444.33333333345556888888888877764444355555555555555555666677766666655 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   1.2   1.4e-17   2.9e-14       5      65 ..      52     112 ..      49     116 .. 0.97

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.4e-17
    TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDk 65 
                  y vL++++ a+e eikk++r Lak +hPD+n++++a+k f  i  a++ + n + r+ yD 
  MMETSP1174-20130828|33289_1  52 YAVLEVKKTANETEIKKSYRSLAKFWHPDKNDDPEAQKKFNAIAKAYETIGNEEGRKIYDH 112
                  99*********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1075.23
//
Query:       MMETSP1174-20130828|33297_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-65  217.2   0.0    7.8e-65  216.9   0.0    1.0  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    1.9e-56  189.3   0.0    1.1e-55  186.9   0.0    2.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    5.4e-48  161.4   0.0    7.3e-48  161.0   0.0    1.1  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    5.2e-46  154.9   0.0    7.8e-46  154.4   0.0    1.2  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    3.3e-43  146.0   0.0      7e-43  144.9   0.0    1.5  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    5.9e-43  144.9   0.0    1.2e-42  143.9   0.0    1.5  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    5.6e-41  138.3   0.0    1.1e-40  137.4   0.0    1.4  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    2.1e-37  126.9   0.0    3.8e-37  126.0   0.0    1.3  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    8.6e-36  121.3   0.0    1.4e-35  120.6   0.0    1.2  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    7.4e-21   71.9   0.0    1.7e-19   67.4   0.0    2.1  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    2.8e-17   60.4   0.0    1.1e-13   48.6   0.0    2.2  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   0.0   2.1e-67   7.8e-65       2     418 ..      86     502 ..      85     503 .. 0.86

  Alignments for each domain:
  == domain 1    score: 216.9 bits;  conditional E-value: 2.1e-67
    TIGR00508   2 WhPytqmkeaepplavekaegvyltdedgkeliDgisSwwvavhGhnhpe.lneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeel...lfeqvkvpapeva.lekkeeekeeevleele.klleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFaceh.agvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeelee.lkelpkvkdvRvlGaigavelkee.....kel....eerigekiqkkalekgvllRPlgnviylmppyiiteeeleklveaikeai 418
                  W P ++m   +++ +++k+eg+yl+d++gke++D +s   ++  Gh  pe +++a+ +q+++l     +    e  ++L++ L e++p +l+ ++f + Gs a E a+++a  y      + k+k+l+  ++YHG T  +++ ++   f++ f e+    f +++ p+p    ++++++e +e++l+ le ++l e  ++iaa+++E +v gagG  + +++y++ +r++cd+y+++li+DE+++GfgrtG+++ ++h agv+PD+++ +K+ltg ylpla++ +++ i + f +++    +  g+ty ++p+a ++A++ ++   +++i+ + k++ea + ee+++ ++++p+v + R  G+ g+v+++++     + +       ++++++++  e+g++      +i + pp+iite el++ ++ +++ai
  MMETSP1174-20130828|33297_1  86 WGPSSTM---KHVPQIVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPEtVATAVDDQMRTLPFLYGGLGMSEIRARLSSLLSELTPGDLNGFLFPSGGSDANEAAIRIARGY------TGKHKVLSHYRSYHGGTTSSLAATG--DFRRWFGEAgatGFIKCFGPSPFHFsMGESDDEVAERSLNMLEeQILMEGPNTIAAMLMESIV-GAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHyAGVVPDVVTSAKGLTGSYLPLAMVAVRQPIKDFFEEQS----IGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKlVDNHPSVLQGRAKGLFGCVDTVDPsgrltQ-NlqgpMPPANAAFKRAYHEEGLYGLLRLPLIHTAPPLIITEPELREGFQRLSTAI 502
                  6666666...4677899******************************9964789*********98765555678899*********************************9877......56889************99987765..4555555541005556677777554577799999999999997257788899********976.********************************************998479*****************************9997775....889****************************************9995667*******************99666542.244555667888999999999864333568999************9999988876 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   2.9e-58   1.1e-55      12     337 ..      97     445 ..      89     503 .. 0.80

  Alignments for each domain:
  == domain 1    score: 186.9 bits;  conditional E-value: 2.9e-58
    TIGR00707  12 aivrgkgakvyDveGkeYlDlvaGiavnalGHahpk.lvealkeqleklvh.vsnlyateeqlelaeklvelsaad..rvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatgk..........pkykkdFeplvpgvkyveynd..iealkeaidde........taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehyg.vePDiltlakalggG.vPigavlakeevaealtvGd..HgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkki.ikevrGkGLllGieleaeslkei 337
                  +iv+g+g+++yD+eGkeY+D ++    ++lGH+ p+ ++ a+ +q+ +l +  + l + e + +l+  l+el+  d   + f   G++anEaA+++ar +++     k+k+++ + s+HG t ++l+atg+            + k F+p + +++  e +d   e   ++++++        +aa+++E i G gG     +++++++r++c++++++li+DEv +G+GRtG +++++hy  v PD++t+ak+l+g  +P+++v +++ +++ ++  +   gst+   p+a + a   ++   +++++ ++k+++++++++ ++l+ ++  + + r kGL+  ++  ++s   +
  MMETSP1174-20130828|33297_1  97 QIVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPEtVATAVDDQMRTLPFlYGGLGMSEIRARLSSLLSELTPGDlnGFLFPSGGSDANEAAIRIARGYTG-----KHKVLSHYRSYHGGTTSSLAATGDfrrwfgeagaTGFIKCFGPSPFHFSMGESDDevAERSLNMLEEQilmegpntIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYAgVVPDVVTSAKGLTGSyLPLAMVAVRQPIKDFFEEQSigWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPsVLQGRAKGLFGCVDTVDPS-GRL 445
                  699**********************9*******99736689********7626888999999***********99985566677789***************.....9*********************8633233222113466788999999999888886423333344444677799*9*********************************************************966************65439**************987763379********************************************999878899999*99777776664.333 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.0   1.9e-50   7.3e-48      19     365 ..      98     446 ..      82     503 .. 0.81

  Alignments for each domain:
  == domain 1    score: 161.0 bits;  conditional E-value: 1.9e-50
    TIGR00700  19 aakaegaelkdvdGnrlidlaagiavlnvGhshPkvve.avkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllns.GaeavenavkiarkytgrpgvvafsrgfhGrtnltmaltakvkPykiGfGPf.apevyraPlpydyrdialdkqesldd.elaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaiehedd.kPdlitvaksladG.lPlsgvvGraeilda..papGglGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielkeevpaigdvrglGamiavelvdpdtteP 365
                  ++k+eg  l+d +G++++d+++     n+Gh+ P+ v+ av  q++ l      + + e    l+  l++++Pg    +  l+ s G++a e a++iar ytg++ v++  r++hG t  ++a t+  +     fG   a+   +   p++++ +++++++ + +  l+ +e+   +  +++++aa+++e + G GG  + ++++v+ v+s+c++ givli dev  Gf rtG+++  +h++  +Pd++t ak+l++  lPl+ v  r  i d    +  g G ty   P+a   a+  ++   ++ ++  +++++ ++ ++  +l ++ p + + r +G    v+ vdp  +  
  MMETSP1174-20130828|33297_1  98 IVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPETVAtAVDDQMRTLPFLYGGLGMSEIRARLSSLLSELTPGDL--NGFLFPSgGSDANEAAIRIARGYTGKHKVLSHYRSYHGGTTSSLAATGDFR---RWFGEAgATGFIKCFGPSPFHFSMGESDDEVAErSLNMLEEQILM-EGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYAGvVPDVVTSAKGLTGSyLPLAMVAVRQPIKDFfeEQSIGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPSVLQGRAKGLFGCVDTVDPSGRLT 446
                  689*******************************977549*******99998899999***************865..45566552789******************************9999999765...556654134445555578888888877777666477777776555.49*************************************************************8659**********97559*********999972145567899*****************9999999*************************************9999876533 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   2.1e-48   7.8e-46      22     436 ..      96     505 ..      81     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 2.1e-48
    TIGR00709  22 plafakakGckvtdveGkeyldflaGaGtlalGhndea.lkqklkdvldsglvlhtldlt.tklkdafieallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqfl.pydheyreplglggeagadavieyienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafeh.aGiepdvvvlskavGG.glplavlaikkefdaf...qpaehtGtfrGnqlalatGlealeilkdenlaknaqergerltsalddlikeypeiknvrGrGlmlGieivderk..skdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqaveea 436
                  p  + k +G++++d eGkey+d  + a + +lGh  +  +  ++ d +   l+     l  ++++  ++  l ++ + ++ +  + f+   G+da+eaa+++a+ ytG+ +v+s    +hG t+ +la tG+  +  +  +    ++ + p +   +  +g   +  a+ + + +e+ +     G +  aa+++e+i G GG    + ++++ +r +++k +i+li+dev  G++r+G+++ f+h aG+ pdvv  +k + G  lpla++a+++    f   q  +   t++   +al   +e++++  d+++  n +     + +  ++l+ ++p + + r +Gl   +++vd     +++  g  p     a+a  k+ ++++ l   g     +++  +p++i++ el e+ +rl  a+  +
  MMETSP1174-20130828|33297_1  96 PQ-IVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPEtVATAVDDQMRT-LPFLYGGLGmSEIRARLSSLLSELTP-GDLN-GFLFP-SGGSDANEAAIRIARGYTGKHKVLSHYRSYHGGTTSSLAATGDFRRWFGEAGATGFIKCFgPSPF--HFSMGESDDEVAERSLNMLEEQI--LMEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHyAGVVPDVVTSAKGLTGsYLPLAMVAVRQPIKDFfeeQSIGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPSVLQGRAKGLFGCVDTVDPSGrlTQNLQGPMP----PANAAFKRAYHEEGLY--GLLRLPLIHTAPPLIITEPELREGFQRLSTAIDRT 505
                  43.56899**************************9876155566666655.44443344303556666555555555.3333.33343.2479**************************************98776665555555543314444..44456666666777777666655..35677889******************************************************9889*************99679*******97654442337788999****************************99999999***************************9976300333344443....3444444444444332..44566788999999999999999999999988765 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.9e-45     7e-43      21     395 ..      98     504 ..      75     506 .. 0.79

  Alignments for each domain:
  == domain 1    score: 144.9 bits;  conditional E-value: 1.9e-45
    TIGR03246  21 pvrgeGsrvwdqegkeyidfaGGiavnalGhahpelv.ealkeqaeklwhlgngy.tnepvlrlakklvdatfadk..vffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrtlftvsvGGq..........akysedfaplpegikhaaynd......lealkali...sdkt.cavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymey.GvtpdiltsakalGgGfpiGalltteelakvl.kvGt..hGttyGGnplacavaekvldlvntaelleGvkqrhelfvdelekinarykvfseirGkGlliGav........lteeyaGk...a.kdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarlekavek 395
                   v+geG  ++d+egkey+d++     + lGh+ pe v +a+++q ++l  l  g+   e   rl+  l + t  d     f   G++aneaa+++ar ++       k+++++   s+hG t  ++++ G           + + + f+p p + +  + +d      l+ l+++i     +t  a+++e i G gG +   +++++g+r++cd+++ +li+dev  G GrtG+++ +++y Gv+pd++tsak+l g +   a+++  +  k + +  +   G+ty   p+a   a + ++   + +++   k+ ++++++e +k+ +++    + r kGl +G+v        lt++++G    a   + +a +eeG+  l+  p ++  ap l+i+e e+ eG++rl++a+ +
  MMETSP1174-20130828|33297_1  98 IVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPETVaTAVDDQMRTLPFLYGGLgMSEIRARLSSLLSELTPGDLngFLFPSGGSDANEAAIRIARGYT------GKHKVLSHYRSYHGGTTSSLAATGDfrrwfgeagaTGFIKCFGPSPFHFSMGESDDevaersLNMLEEQIlmeGPNTiAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYaGVVPDVVTSAKGLTGSYLPLAMVAVRQPIKDFfEEQSigWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPSVLQGRAKGL-FGCVdtvdpsgrLTQNLQGPmppAnAAFKRAYHEEGLYGLLRLP-LIHTAPPLIITEPELREGFQRLSTAIDR 504
                  489*******************************97626899******99987772568889**********99852145778899***********996......57899*********999988876542211111111567788999997776554443222222777888774433456257889***************************************************879************8887656777766655544243322279***********************************************999999****7.57763334444466777774222313455666799999999877.7899*********************986 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   3.3e-45   1.2e-42      23     401 ..      98     502 ..      89     503 .. 0.82

  Alignments for each domain:
  == domain 1    score: 143.9 bits;  conditional E-value: 3.3e-45
    TIGR01885  23 lskaeGakvwdvegkryldflsaysavnqGhchpkivk.alveqaqkltlssraf.yndvfgefaeyvtklfG..ydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnv..................kkieynnlealeealeeag.ekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllavehe.evkPdivllGkalsgGvyPvsavladkevmltikpge..hGstygGnPlasavavaalevlkeeklaeraeklGeelreelkkl..kkeivkevrGkGllnaiv.ideskangre........awdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkvl 401
                  + k+eG +++d egk+y+d+ s   + n Gh+ p+ v+ a+ +q ++l +    +  +++ ++++  +++l     + +l  + G++a+e+ai++ar   y+ k       ++ls  +++hG t +  sl+++ + r+ fG   ++                   +++   +l+ lee++  +g +++aa+l+e i G  G ++  ++y++ vr++c+ky ++li+de+  G +rtG + +++h+ +v Pd+v+  k l+g  +P++ v  ++ +   ++  +   Gsty   P+a + a ++++   +++++ +++++ +++ ee +kl  +++ v + r kGl+ ++  +d+s   +++                +e+Gl     +  +i  aPPl+ite el+e+ + +++++
  MMETSP1174-20130828|33297_1  98 IVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPETVAtAVDDQMRTLPFLYGGLgMSEIRARLSSLLSELTPgdLNGFLFPSGGSDANEAAIRIARG--YTGK------HKVLSHYRSYHGGTTS--SLAATGDFRRWFGEAGATGfikcfgpspfhfsmgesdDEVAERSLNMLEEQILMEGpNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYaGVVPDVVTSAKGLTGSYLPLAMVAVRQPIKDFFEEQSigWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLvdNHPSVLQGRAKGLFGCVDtVDPSGRLTQNlqgpmppaNAAFKRAYHEEGLYG-LLRLPLIHTAPPLIITEPELREGFQRLSTAI 502
                  469*******************************9876267789999987766653899999******9998512567999****************5..5544......468899999*****99..6666677788888765443477789999999****9999999999999987655551679*****************************************************987659*******************************998763378******************************************9666788999999*****9962454432221100111111223334456666654.345668899**************99988877 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   2.8e-43   1.1e-40      22     410 ..      99     502 ..      89     504 .. 0.78

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 2.8e-43
    TIGR02407  22 ekakgaklldedgkeyidflagaGalnyGhnneklk.ealldylaedg.ivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskr...eeagvslsnvvrlPydgyldeevdsla.yleklleds..ssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfee.agikPdivclsksisGiGlPlalvllkpel.dvwkPgehnG...tfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkk..edlakkv......akkafekgliiet.sGa.edevlkllpaltideeelekGleileqal 410
                   k++g +l+d++gkey+d+ + a + n Gh  ++   +a+ d +++   +  +l m +e +++  + ++e  l P +l+  + f++  G++a e+a+++ar +tg+++v++   ++hG +++sla tg+       ++a+   +     P+   ++e+ d++a    ++le++    G ++ aa+++e++ g GG  +  +++++ ++++c +++i+li+d++ +G GrtGtf+ f++ ag+ Pd+v+ +k ++G  lPla+v ++  + d ++  +  G   t++ + +a+ +a + ++ y  d+++  + k+ + ++ e  +++v+++p++  + r +Gl+  +++ +    l++++      a++af++    e   G  +  ++   p+l+i+e el++G++ l++a+
  MMETSP1174-20130828|33297_1  99 VKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPETVaTAVDDQMRTLPfLYGGLGM-SEIRARLSSLLSE--LTPGDLNG-FLFPS-GGSDANEAAIRIARGYTGKHKVLSHYRSYHGGTTSSLAATGDFRRWfgeAGATGFIKCFGPSPFHFSMGESDDEVAeRSLNMLEEQilMEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHyAGVVPDVVTSAKGLTGSYLPLAMVAVRQPIkDFFEE-QSIGwgsTYQAHPVALRCAYECIK-YTLDNDIVGNSKRMEAVMIEETQKLVDNHPSV-LQGRAKGLFGCVDTVDpsGRLTQNLqgpmppANAAFKRAYHEEGlYGLlRLPLIHTAPPLIITEPELREGFQRLSTAI 502
                  4789**************************97765505555666665515556666.6778887777776..89****95.55665.5899*************************************865431113333444555678999999998777651445788887345799999******************************************************8659***********************998665155554.4433334****************9.7888889999999999999999*****99875.688999999999987633456777622222234566665554431232134567788899999999999998888887 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0     1e-39   3.8e-37      69     389 ..     106     439 ..      98     445 .. 0.83

  Alignments for each domain:
  == domain 1    score: 126.0 bits;  conditional E-value: 1e-39
    TIGR03372  69 lvdtqgqeyldclggygifnvghrnpvvva.avesqlakqplhsqel.ldplrallaktlaaltpgklkysffsnsgtesveaalklakayqsprgkytfiaasgafhgkslgalsataksafrkpf........mp.llpgfrhvafgdie..amlkalq....eck.ktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehe.nvqpdilclakalgggvmpigatvateevfsvlfen.pflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgllqaiefv 389
                  l d +g+ey+d        n+gh  p  va av++q+   p+    l +  +ra l+  l+ ltpg+l+  +f   g+++ eaa+++a+ y    gk+  ++   ++hg +  +l+at    fr+ f        +  + p   h ++g+ +     ++l+    +      + +aa+++e i g gg ++ pe+y++ vr++cd++g +li+dev  g+grtg ++  +h+ +v pd++  ak l g  +p+ a va  + +  +fe+  +   +t+   p+a  +a   ++  l++++  +++    ++++  ++l  ++p +++  r kgl+ +++ v
  MMETSP1174-20130828|33297_1 106 LYDNEGKEYMDWTSQAVCSNLGHTVPETVAtAVDDQMRTLPFLYGGLgMSEIRARLSSLLSELTPGDLNGFLFPSGGSDANEAAIRIARGYT---GKHKVLSHYRSYHGGTTSSLAATG--DFRRWFgeagatgfIKcFGPSPFHFSMGESDdeVAERSLNmleeQILmEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYaGVVPDVVTSAKGLTGSYLPL-AMVAVRQPIKDFFEEqSIGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPSVLQ-GRAKGLFGCVDTV 439
                  7899**********************866439********97666654899***************************************95...9***************99999986..466655221111112212345567777865311344444411113331345789********************************************************857******************9.5677777777777651566899***********************************************9765.7999998887766 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   3.8e-38   1.4e-35      31     340 ..      96     421 ..      88     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 120.6 bits;  conditional E-value: 3.8e-38
    TIGR00713  31 PlfvekakgallldvdgneyiDyvlsyGplilGhahe.kvveavkealer.GlsyGapteaei..elakeiiervksv.ekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyn..d.......leal.eevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.Rv.alegaqelygvepDlvvlGkil.ggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleek 340
                  P  + k++g +l+d +g+ey+D+        lGh+ + +v +av ++++     yG    +ei  +l  ++ e  +   +   + + G++a  +a+R+aRg+tg++k++    +yhG + + L+++g     +g   ++g  + +            d       l++l e++l e  + ia++++e+++g  g++   +++++++r++++++g++li+Dev+ GF R  ++ g q++ gv+pD+v+  k l g+ lP+++++ r+ i + +  e ++    t +++p+a+   ++++k   ++++  + +++++ + e  +++++++
  MMETSP1174-20130828|33297_1  96 P-QIVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPeTVATAVDDQMRTlPFLYGGLGMSEIraRLSSLLSELTPGDlNGFLFPSGGSDANEAAIRIARGYTGKHKVLSHYRSYHGGTTSSLAATGDFRRWFGEAGATGFIKCFGPSPFHFSMGesDdevaersLNMLeEQILMEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFgRTgTFWGFQHYAGVVPDVVTSAKGLtGSYLPLAMVAVRQPIKDFFE-EQSIGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNH 421
                  4.4679******************9999999***976268899*9998753789*987777762267888888887766889999******************************************99999996666665555544444333320020111000223314677788899***************999999*************************5442467*****************7615569******9999988765.56788889999*******************9*********99999999998876 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   4.7e-22   1.7e-19     143     382 ..     201     440 ..      79     450 .. 0.71

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 4.7e-22
    TIGR03251 143 kvlhlrqafhGrsGytlsltnt.dPr.ktarfPkfdwPridaPk.ltfpldaeeldavkaleeealaqak.aafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqql.gvkPdvvafGkktqvcGi.lagrrvdevadnvfkvss.rlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvsnprGrGllcafdlps 382
                  kvl   +++hG    t sl+ t d r          + +   P  ++f + +e+    +++ e++l+  + + + e ++ iaa+++e i g GG   l  ++++ +r +cd++ ++l++dev  G G tG++w +q++ gv Pdvv+  k    + + la   v +  ++ f+++s    st+    v +  a   ++   ++++v +++++ + + ++ ++l +++p  v + r +Gl+  +d  +
  MMETSP1174-20130828|33297_1 201 KVLSHYRSYHGG--TTSSLAATgDFRrWFGEAGATGFIKCFGPSpFHFSM-GESD---DEVAERSLNMLEeQILMEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYaGVVPDVVTSAKGLTGSYLpLAMVAVRQPIKDFFEEQSiGWGSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHP-SVLQGRAKGLFGCVDTVD 440
                  566556666663..344444442222022233334444444444123332.2233...34455666665515678899**********************************************************9758*******999755444347888898888999998883589********99999999999999**************************.78899*****99988655 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00016     0.061      40     142 ..      94     193 ..      77     201 .. 0.82
   2 !   48.6   0.0     3e-16   1.1e-13     177     418 ..     201     444 ..     193     450 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00016
    TIGR00699  40 fladyekslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinrPalGnfpskdlakilkegilkvaPkgldsvysalaGsdanelafkaa 142
                   + +  k  G yl d +G  ++d  +q     +G+  P+ +  a ++++ t       lG     ++   l + ++   P  l+   +   Gsdane a ++a
  MMETSP1174-20130828|33297_1  94 HVPQIVKGEGIYLYDNEGKEYMDWTSQAVCSNLGHTVPETVATAVDDQMRTLPFLYGGLGM---SEIRARLSSLLSELTPGDLNGFLFPSGGSDANEAAIRIA 193
                  555667889*************************************999987666666665...455555556577899999999999999999999998876 PP

  == domain 2    score: 48.6 bits;  conditional E-value: 3e-16
    TIGR00699 177 avlsfkaafhGrlfgslsttrs..kpihkldiPafdwPqaefPslkyPleehveenakeeqrcleeveelikkyrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqtaGyffhdealrPnkpyrqf.........ntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawdtpdeakr 418
                   vls  +++hG + +sl++t    +     +   f     + P +++ + e  +e a+   + le  e+++ +  + +aa+++e i   GG     +++++++r i  k+++v i+dev  G G tG++w  +h+     +d+vt +k l  +  +     +   +p + f          t+  +P+    + e i+   d+d++ n +++  +++++ ++l  ++P  l   +g+ +G f + dt d++ r
  MMETSP1174-20130828|33297_1 201 KVLSHYRSYHGGTTSSLAATGDfrRWFGEAGATGFIKCFGPSP-FHFSMGESDDEVAERSLNMLE--EQILMEGPNTIAAMLMESIVGAGGCLILPEKYVQGVRSICDKYGIVLIMDEVMMGFGRTGTFWGFQHYAG-VVPDVVTSAKGLTGS--YLPLAMVAVRQPIKDFfeeqsigwgSTYQAHPVALRCAYECIKYTLDNDIVGNSKRMEAVMIEETQKLVDNHPSVL---QGRAKGLFGCVDTVDPSGR 444
                  6889999999999999988865113445555555555555555.678888877777665555554..6899999**********************************************************99975.5569**988776543..44444444444555553323222225677778777777888888889**************************876...5889999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.19s 00:00:00.85 Elapsed: 00:00:00.49
# Mc/sec: 1376.46
//
Query:       MMETSP1174-20130828|33295_1  [L=882]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   11.1   0.0       0.15    9.7   0.0    1.7  2  TIGR00685 T6PP: trehalose-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   3.7e-05      0.15     152     189 ..     321     358 ..     317     425 .. 0.86
   2 ?   -3.5   0.0      0.41   1.7e+03      20      57 ..     453     486 ..     444     492 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.7e-05
    TIGR00685 152 lkvqdGkavvElkPrdvnKGeivkklleeadvsgisak 189
                  l+v+ G   + + P + +KG+iv+ + e+ +v++ s+ 
  MMETSP1174-20130828|33295_1 321 LAVDAGAGFIPVGPTEAKKGRIVATVFEDPHVRPNSKV 358
                  899*******************************7763 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.41
    TIGR00685  20 dPdaavvsdellevLqkLaarsdvalaliSGRkllekl 57 
                  +P  + ++    +  q   a  +  l +i GR+l+e +
  MMETSP1174-20130828|33295_1 453 HPSGVTIERSTQTLYQT--AVLRK-L-IITGRELTEET 486
                  45544444443333332..22233.3.89999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.51
# Mc/sec: 2282.64
//
Query:       MMETSP1174-20130828|33319_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 786.66
//
Query:       MMETSP1174-20130828|33323_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    7.4   8.0        1.8    6.3   0.1    3.0  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1   0.00092       3.8       4      13 ..       7      16 ..       6      16 .. 0.90
   2 ?   -1.6   0.0      0.13   5.3e+02      20      23 ..      20      23 ..      19      26 .. 0.67
   3 ?    6.3   0.1   0.00043       1.8       4      13 ..      29      38 ..      28      38 .. 0.91
   4 ?   -2.0   0.0      0.17     7e+02      10      14 ..      44      47 ..      41      49 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00092
    TIGR02167  4 gCssLtsLDl 13
                 +CssL +L+l
  MMETSP1174-20130828|33323_1  7 SCSSLHTLNL 16
                 7*******97 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.13
    TIGR02167 20 nVTn 23
                 +VT+
  MMETSP1174-20130828|33323_1 20 QVTD 23
                 6787 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00043
    TIGR02167  4 gCssLtsLDl 13
                 +CssL +L+l
  MMETSP1174-20130828|33323_1 29 NCSSLHTLNL 38
                 9*******97 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.17
    TIGR02167 10 sLDlS 14
                 + D+S
  MMETSP1174-20130828|33323_1 44 T-DVS 47
                 4.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.38
# Mc/sec: 184.09
//
Query:       MMETSP1174-20130828|33321_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.8   0.0       0.34    8.2   0.0    2.1  2  TIGR00646 MG010: DNA primase-like protein


Domain annotation for each model (and alignments):
>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00049         2     152     196 ..      22      66 ..      15      75 .. 0.83
   2 !    8.2   0.0   8.3e-05      0.34     151     182 ..      94     125 ..      79     138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00049
    TIGR00646 152 kkikkvvlcldndlagkvaaknlkeilkkagfivkvvelkakvkd 196
                  + ik  +  +d d +g  + ++lk  l   gf  k   +   + d
  MMETSP1174-20130828|33321_1  22 EEIKEAFDLFDTDHSGTITPSELKTALASLGFEGKTQAIVQMMSD 66 
                  578899999***********************9987665555444 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 8.3e-05
    TIGR00646 151 qkkikkvvlcldndlagkvaaknlkeilkkag 182
                  +  i kv+  +d+d +gk + +n+k++ k+ g
  MMETSP1174-20130828|33321_1  94 RADIAKVFELYDDDNTGKISLRNMKRVAKELG 125
                  46799*********************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 796.82
//
Query:       MMETSP1174-20130828|33345_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1174-20130828|33366_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   12.7   9.1      0.011   12.0   0.0    2.3  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   2.6e-06     0.011     509     578 ..      46     114 ..       4     165 .. 0.73
   2 !    0.5   5.1    0.0083        34     304     390 ..     226     310 ..     198     384 .. 0.59

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.6e-06
    TIGR02442 509 rdkvaliaFrgeeaevllpptssvelakreLeelptggrtPLaagLkkaaevlknellkdkderplvvvi 578
                   + v++++ +g+ aev+++pt+ +      L++l+  g+  + +g + a   lk+ + ++++ + +vv +
  MMETSP1174-20130828|33366_1  46 ENTVGVMSMAGRGAEVMVSPTDDMGKLMACLHDLKLTGKLSFVTGVQVAWLALKH-RINKNGGQRIVVFV 114
                  4789**********************************************99995.55555555555554 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.0083
    TIGR02442 304 LvlkhRrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagk 390
                  L+++ R+  +   ++  +e++  ++++++a++ + +  +s e e e+ +++ ++ep +  ++ ed++ + +e++ + ee+al +++ 
  MMETSP1174-20130828|33366_1 226 LAMALRVSMEEERAR--QEREAGDTAQAQASQAAAEDTNSGEMEVEQTEPAAAKEPTAAPSEAEDNSMPMNEDNFEFEEQALLQQAL 310
                  555555543333333..2333333333333333333333333333333444444444443333444444444333334443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1497.03
//
Query:       MMETSP1174-20130828|33404_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 713.72
//
Query:       MMETSP1174-20130828|33429_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|33446_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 348.83
//
Query:       MMETSP1174-20130828|33480_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 436.58
//
Query:       MMETSP1174-20130828|33489_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|33506_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 584.52
//
Query:       MMETSP1174-20130828|33522_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1117.51
//
Query:       MMETSP1174-20130828|33538_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|33535_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 796.49
//
Query:       MMETSP1174-20130828|33567_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|33584_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 408.74
//
Query:       MMETSP1174-20130828|33587_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 455.96
//
Query:       MMETSP1174-20130828|33600_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.5   0.1      0.084   10.4   0.0    2.2  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0023   15.5   0.0       0.62    7.5   0.0    2.2  2  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0099   13.1   0.0      0.014   12.6   0.0    1.1  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
  ------ inclusion threshold ------
      0.014   13.0   0.1      0.025   12.2   0.0    1.4  1  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      0.015   13.0   0.1      0.026   12.2   0.1    1.3  1  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.022   12.6   0.0      0.032   12.1   0.0    1.3  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.039   11.6   0.0      0.068   10.9   0.0    1.4  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family


Domain annotation for each model (and alignments):
>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00014     0.084       4      63 ..      85     144 ..      82     152 .. 0.87
   2 ?    3.2   0.0     0.023        13     113     131 ..     177     195 ..     154     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00014
    TIGR02322   4 ilvvGpsGaGKDtlldlararladeprvlfarRvitReadag.gEdhealseeeFeerede 63 
                  +++vG  G+GK t  +l +++l +   ++ +  vi + ada  gE  e + e+eF+++e++
  MMETSP1174-20130828|33600_1  85 VYIVGMMGSGKSTTGQLFAQTLGSY-AFVDTDEVIEKAADAKiGEIFENVGEAEFRKMESS 144
                  89***********999999888777.688899*******9954899**********99875 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.023
    TIGR02322 113 lvvaitaspdvLaqRLaaR 131
                  +v+ ++++p++La+RL a 
  MMETSP1174-20130828|33600_1 177 VVLFLDVPPEILAKRLDAD 195
                  57889***********875 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0011      0.62       7      40 ..      85     116 ..      80     147 .. 0.68
   2 !    6.1   0.0     0.003       1.8     125     155 ..     173     201 ..     148     246 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0011
    TIGR00041   7 iviEGidGaGKTtqlellkkllkeeglkvlltrE 40 
                  + i G+ G+GK+t  +l++++l    ++ + t E
  MMETSP1174-20130828|33600_1  85 VYIVGMMGSGKSTTGQLFAQTLGS--YAFVDTDE 116
                  567799**************9987..44444444 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.003
    TIGR00041 125 lqlkPdlvilLdidpevalerlskrgeldre 155
                  lq    +v++Ld++pe+  +rl +  + d+ 
  MMETSP1174-20130828|33600_1 173 LQ--AGVVLFLDVPPEILAKRLDADTNSDNR 201
                  44..679***************999885533 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.4e-05     0.014      20     150 ..      78     211 ..      71     226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-05
    TIGR02355  20 eklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesak.daleelnphiei...etinaklddeelaaliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairl 150
                  + lk   v ivG+ G G +++  l a  +G   +vd d+v     + ++     n+g+      + + l+ ++ ++++   +   a++ ++++  l a + + +d+  ++   ++l++  +   +pl+sg    l
  MMETSP1174-20130828|33600_1  78 KTLKGVPVYIVGMMGSGKSTTGQLFAQTLGSYAFVDTDEVIEKAADAKIGEIFENVGEAEFRKMEsSVLQGVQAYVRLvvsTGGGAVVTESNWGVLQAGVVLFLDVPPEIL-AKRLDADTNSDNRPLLSGDETTL 211
                  6799999*************999*****************9999998888888888776554443135777888887521133468999999*999999999999999985.56899999*******99976655 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.2e-05     0.025       3      40 ..      87     125 ..      85     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.2e-05
    TIGR01313   3 lmGvaGsGkstiakelakklg.akfieGDdlhpkaniek 40 
                  ++G+ GsGkst ++  a+ lg  +f++ D++  ka  +k
  MMETSP1174-20130828|33600_1  87 IVGMMGSGKSTTGQLFAQTLGsYAFVDTDEVIEKAADAK 125
                  79******************9899*****9987776655 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.5e-05     0.026       4      39 ..      87     123 ..      85     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.5e-05
    TIGR00152   4 ltGgigsGKstvakilkdk.yklpvidADkiarqvve 39 
                  ++G +gsGKst+ +++++  +++  +d D ++ ++ +
  MMETSP1174-20130828|33600_1  87 IVGMMGSGKSTTGQLFAQTlGSYAFVDTDEVIEKAAD 123
                  89**************885378999****99987765 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05     0.032       3     112 ..      85     197 ..      83     238 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.4e-05
    TIGR02173   3 ivisGpPGsGkttvakilaekl.slklisaGkirelaekkgl.dlaeskkaeeekeiDkkiDrkike....iaek.eknvvlesrlagWllkeyaDvkiylkaslevraeriakren 112
                  + i G  GsGk+t  +  a++l s+ ++ + ++ e a++  + ++ e+   +e ++++ ++ + ++     ++++  + vv es    W +  +a v ++l+ + e+ a+r+    n
  MMETSP1174-20130828|33600_1  85 VYIVGMMGSGKSTTGQLFAQTLgSYAFVDTDEVIEKAADAKIgEIFENVGEAEFRKMESSVLQGVQAyvrlVVSTgGGAVVTESN---WGVL-QAGVVLFLDVPPEILAKRLDADTN 197
                  6799*****************95699****9999998887774566666666666666665555444000044441455666664...5553.68999999****999999876555 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.068      17      49 ..      77     109 ..      64     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    TIGR00150  17 kaldlatvvlLkGdlGaGKttlvkgllkglGiq 49 
                  +++ ++  v++ G +G+GK t  + +++ lG  
  MMETSP1174-20130828|33600_1  77 RKTLKGVPVYIVGMMGSGKSTTGQLFAQTLGSY 109
                  5555566699*********************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 824.93
//
Query:       MMETSP1174-20130828|33673_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 246.38
//
Query:       MMETSP1174-20130828|33711_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.49
# Mc/sec: 196.64
//
Query:       MMETSP1174-20130828|33722_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-143  474.7   0.0   5.9e-143  474.3   0.0    1.1  1  TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
     0.0092   13.0   0.0      0.016   12.2   0.0    1.4  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family


Domain annotation for each model (and alignments):
>> TIGR00243  Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.3   0.0  2.9e-146  5.9e-143       3     386 ..      79     480 ..      77     482 .. 0.93

  Alignments for each domain:
  == domain 1    score: 474.3 bits;  conditional E-value: 2.9e-146
    TIGR00243   3 qiviLGstGsiGkstLdvvkknpdkfqvvalsaGknvaklveqieefkP..kfvaiddaeklkkLkellae...tdietevlvGeegivelaaeedadlvlaaivGaaGLlptlkaikagkkiaLankesLvtagklvldavkkydvkllPvDsehsaifqsLqeglkekgvkrliltasGGafrdtpleeleivtved.......alkhPnWsmGkkitiDsatlmnkgleviearwLfnasaeqidvvihkqsiihslvefeDksviaqlgepDmrlPiayalaypervls...dv.kpLdlvklsalkfeepdfdrypclklaleagkaGqaattvlnaanevavaafLakkiafldiakliekelekkqll...kkqsledvleldkearetalkevak 386
                   i+++GstGsiG++tLd+v++ pdkf+v alsaGkn+++l++q  ef+   k+++   ++++ +Lk++l +   +d++ ev +G eg++++a+e +a+ v+++ivG+aGLlpt++aikagk+iaLanke+L+++g+++l++ ++++v ++P+Dsehsaifq+Lq g++  g+++++ltasGGafrd + eel++  + d       a  hPnW mG+kit+Dsat+mnkgleviea++Lf+a++++idvvih+qsiihs ve  D+s+iaqlg+pDmrlPi y++a+p+rv +   ++ +pL+lv+l++++f +pd  +ypc++la++ag++G+++t  lnaane a + f +   +f +iak++e ++ek+  +   +k sle++le+d++ar+ +++e +k
  MMETSP1174-20130828|33722_1  79 SISLIGSTGSIGTQTLDIVRARPDKFKVTALSAGKNLDLLADQASEFREtvKVISCASEDDIPELKRKLSDrgvKDSSMEVYAGAEGVDAVATEDEANVVVTGIVGCAGLLPTIAAIKAGKRIALANKETLIAGGPVILPLLEEFGVTMTPADSEHSAIFQALQ-GVPPGGMRKVVLTASGGAFRDISAEELAQKCASDpewvrakATTHPNWDMGAKITVDSATMMNKGLEVIEAHYLFGADYDDIDVVIHPQSIIHSAVETMDNSMIAQLGWPDMRLPILYSIAWPHRVAMptgQFeRPLNLVELGKMTFMAPDTSKYPCIQLAYDAGRTGGTMTGCLNAANEEANQLFRDGAFGFEGIAKVVELTMEKHASMcdpSKASLETILEVDEWARRFVREEAIK 480
                  589********************************************9722556677899999***9998755568889*************************************************************************************.9**************************9887654344444499**********************************************************************************98753323379******************************************************************999887662225678*************99887665 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.8e-06     0.016     196     253 ..      92     149 ..      80     181 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.8e-06
    TIGR02149 196 drlgidrsrplvlfvGritrqkGvvhllkavkllskdvqvvlcagapdtPevaeevkq 253
                  + l+i r rp  + v  ++  k +  l + + ++++ v+v+ ca+  d Pe++ ++ +
  MMETSP1174-20130828|33722_1  92 QTLDIVRARPDKFKVTALSAGKNLDLLADQASEFRETVKVISCASEDDIPELKRKLSD 149
                  56788899999999*************************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1844.08
//
Query:       MMETSP1174-20130828|33754_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 316.77
//
Query:       MMETSP1174-20130828|33786_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 997.25
//
Query:       MMETSP1174-20130828|33880_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   24.1   0.7    1.1e-05   23.5   0.4    1.3  1  TIGR00264 TIGR00264: alpha-NAC homolog
  ------ inclusion threshold ------
      0.022   11.1   0.2       0.02   11.2   0.1    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1


Domain annotation for each model (and alignments):
>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.4   5.4e-09   1.1e-05      67     112 ..      45      90 ..      28      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 5.4e-09
    TIGR00264  67 kkekveeeeeiseddielvmkqanvskeearraleeagGdlaeail 112
                   +e ++    i+ +d+ l+++  +v k +a +al+  +G++ ea+ 
  MMETSP1174-20130828|33880_1  45 ADEDLDMSISIAAEDVSLIVQELEVPKIDAEKALRRNNGNVVEALR 90 
                  3677888889**********************************86 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     1e-05      0.02     263     315 ..      44      95 ..       2      96 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1e-05
    TIGR03996 263 afntdlareiraavagavpvvlqGsvvdiadarralddavadvvemtraqiad 315
                  + + dl  +i  a+   v +++q   v   da++al  + ++vve  r++i+ 
  MMETSP1174-20130828|33880_1  44 SADEDLDMSISIAAE-DVSLIVQELEVPKIDAEKALRRNNGNVVEALRSLITC 95 
                  555677777777665.9********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 422.37
//
Query:       MMETSP1174-20130828|33899_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 443.48
//
Query:       MMETSP1174-20130828|33939_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-34  115.6   0.1    9.1e-31  104.9   0.1    2.2  2  TIGR00235 udk: uridine kinase
    4.5e-07   27.4   0.4    1.2e-06   26.0   0.2    1.7  2  TIGR00554 panK_bact: pantothenate kinase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00016      0.32       5      34 ..      46      75 ..      42      79 .. 0.86
   2 !  104.9   0.1   4.5e-34   9.1e-31      29     185 ..      93     245 ..      90     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00016
    TIGR00235  5 ktiiigiaGasgsGkttvaekivellkkek 34
                   ++ig+a  sg Gk+t ++++v++++ ++
  MMETSP1174-20130828|33939_1 46 PIVLIGVAADSGCGKSTFMRRLVQNFGGSN 75
                 5699********************998765 PP

  == domain 2    score: 104.9 bits;  conditional E-value: 4.5e-34
    TIGR00235  29 llkkekivlisqDnyY.kdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDlii 185
                  +l++  +++i+ D y+ +d + +++++r++++  +    + dl++e lk Lk+gk++d P+Y++v+ t  +   +++p+++vi+eG+ +++d r++dl+d+++++d + di+++ +++rD+eerG sl+s+ +   +  +p +  fv p++  +Dl+i
  MMETSP1174-20130828|33939_1  93 TLTSDDVTVICLDDYHlNDREGRKVTKRTALDAAE---NNFDLMYEQLKTLKSGKSIDKPIYNHVNGTLDT-PETIKPTNIVIVEGLHPFYDSRVSDLMDFSVYLDISDDIKFAWKIQRDMEERGHSLESIQAS-IESRKPDFDAFVGPQRASSDLVI 245
                  67778999999999973666778887777666544...4689************************99743.34689*****************************************************7655.5678*****************99 PP

>> TIGR00554  panK_bact: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.69   1.4e+03      81      99 ..      49      67 ..      44      70 .. 0.80
   2 !   26.0   0.2   5.8e-10   1.2e-06     148     239 ..     134     212 ..     107     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.69
    TIGR00554 81 iisiaGsvavGksttaril 99
                 +i++a     Gkst  r l
  MMETSP1174-20130828|33939_1 49 LIGVAADSGCGKSTFMRRL 67
                 689999999****987644 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 5.8e-10
    TIGR00554 148 vkfladlksGkdnvtapvyshltydviedkfevvekadilileGlnvlqsgtdkddetdrvfvsdfvdfsiyvdaeekllktwyierflklr 239
                   + l+ lksGk ++  p+y h+      d+ e+++ ++i+i+eGl  +              vsd++dfs+y+d  ++  + w i+r +  r
  MMETSP1174-20130828|33939_1 134 YEQLKTLKSGK-SIDKPIYNHVNG--TLDTPETIKPTNIVIVEGLHPFYD----------SRVSDLMDFSVYLDISDDIKFAWKIQRDMEER 212
                  567899****8.5899*****864..568999************975532..........349***********************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 1340.20
//
Query:       MMETSP1174-20130828|33984_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 506.67
//
Query:       MMETSP1174-20130828|34024_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|34038_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 163.67
//
Query:       MMETSP1174-20130828|34057_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1174-20130828|34058_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-07   26.1   0.0      1e-06   25.9   0.0    1.1  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.5e-10     1e-06     220     296 ..      51     130 ..      36     148 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.5e-10
    TIGR00747 220 lAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvkt...vekygntsAasiplaldelleeg 296
                  + +++++  v++ l++ ++kked+d+   H    Riie +++ l l+ee+v  +   +++ygn    s+   l+ +++e+
  MMETSP1174-20130828|34058_1  51 YIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRIIEEAQNGLGLTEEQVKYSwevLDQYGNMLSPSVMFVLELVMKEH 130
                  5678999********************************************765332789*********99988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 768.37
//
Query:       MMETSP1174-20130828|34076_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       448  (0.109215); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        40  (0.00975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.98u 0.22s 00:00:01.20 Elapsed: 00:00:00.65
# Mc/sec: 320.84
//
Query:       MMETSP1174-20130828|34105_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|34107_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-171  566.6   0.3   5.7e-171  566.4   0.2    1.0  1  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  566.4   0.2  1.4e-174  5.7e-171       1     370 [.      10     389 ..      10     391 .] 0.97

  Alignments for each domain:
  == domain 1    score: 566.4 bits;  conditional E-value: 1.4e-174
    TIGR01034   1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyteaelGfdaktiavleaieeqspdiaqgvekekeeelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednk....pvkvdtvvlstqhdeeislkelreaiieeiikpvlpkelldektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevqlsyaigvaePvsisvetfgt....ekkseeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgre..efpWekldkv 370
                  lftsesv eGhPdki+dq+sdavLda++k+d +s+vace+++ktg+++i+Geittsa+v++e v+r+++kdiGy++ ++G+d+kt++v+ aieeqspdiaq+v+ +k e++gaGdqgimfGyat+ete+l+Pl+  la +l ++l+e+rk++ l+++rpd+k+qvt+ey+       p +v+tvv+stqh+e++s +++re ++e++++ v+p ++ld+kt +++nP+GrfviGGP gd+GltGrkii+d+yGg+++hGGgafsGkd +kvdrs+ay+ar++ak+lvaa+l++r++vq+syaig++ P+si v+t+gt    + ks++e++++v+++fdlrp  i+++L+L++pi rktaayGhfgr   +f+We ++++
  MMETSP1174-20130828|34107_1  10 LFTSESVNEGHPDKICDQVSDAVLDACVKDDDTSRVACETCTKTGMIMIFGEITTSATVNYEAVIRETLKDIGYDDPAKGMDYKTVNVIVAIEEQSPDIAQSVDAAKPEDIGAGDQGIMFGYATDETESLMPLSHWLATQLGSRLTEVRKTKVLDWVRPDGKTQVTVEYKIIDgvpvPQRVHTVVISTQHSEDVSAEQIREGLMEHVVRHVIPDKYLDDKTIYHMNPSGRFVIGGPHGDAGLTGRKIIIDSYGGWGAHGGGAFSGKDVTKVDRSGAYAARWVAKSLVAANLCSRCLVQISYAIGISFPLSIFVDTYGTgvskSGKSDAEITEIVNNNFDLRPGCIVRDLNLKRPIMRKTAAYGHFGRTdaDFTWEVPKEL 389
                  69***********************************************************************************************************************************************************************9766677899******************************************************************************************************************************************943323467899*************************************98778****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1664.77
//
Query:       MMETSP1174-20130828|34111_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1076.22
//
Query:       MMETSP1174-20130828|34175_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 1026.94
//
Query:       MMETSP1174-20130828|34200_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|34259_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 501.56
//
Query:       MMETSP1174-20130828|34279_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-06   23.9   0.0    4.9e-06   23.8   0.0    1.0  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      0.005   14.2   0.0     0.0052   14.2   0.0    1.0  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.4e-09   4.9e-06     120     156 ..       5      41 ..       3      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.4e-09
    TIGR01934 120 tdiekaLkelaRVlkpggrlvilefskpknallkkly 156
                   d +kaL+e+ RV  p+grl++le s  +n l++  +
  MMETSP1174-20130828|34279_1   5 PDPQKALQEMCRVCAPDGRLLLLEHSAAENPLVALYQ 41 
                  789*************************998775444 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.5e-06    0.0052     128     156 ..       5      33 ..       2      48 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.5e-06
    TIGR02752 128 pdylqvlkemarvvkpggkvvcletsqpt 156
                  pd  + l+em+rv  p g++  le s  +
  MMETSP1174-20130828|34279_1   5 PDPQKALQEMCRVCAPDGRLLLLEHSAAE 33 
                  89999*******************98644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|34311_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 498.15
//
Query:       MMETSP1174-20130828|34319_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|34326_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-15   54.6   0.1    2.4e-15   54.4   0.0    1.0  1  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.8e-19   2.4e-15      39      93 ..       2      56 ..       1      59 [. 0.96

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5.8e-19
    TIGR03455 39 dsLdeilavlPglegPTvskladedwvaVeavvdekevneliekLkevGAedIlv 93
                 +sL+ ++a++Pg ++PT+++l++ +wv+++a+v++k+ + ++++L+++GA+dIl+
  MMETSP1174-20130828|34326_1  2 SSLRSACAITPGKTSPTIMSLDEVNWVSISALVEKKKAAAVMDDLQKIGAKDILT 56
                 6899*************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1174-20130828|34331_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|34336_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|34352_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|34400_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.5   0.3      0.017   12.4   0.2    1.0  1  TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ


Domain annotation for each model (and alignments):
>> TIGR02780  TrbJ_Ti: P-type conjugative transfer protein TrbJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.2e-06     0.017      95     150 ..      13      66 ..      10      70 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.2e-06
    TIGR02780  95 tniisqaqalaysvanl.ddefsqkyqdaasyaassgsdrqnlsdayarwaqttrda 150
                  ++++++ + l  + ++l +def++k+q  +   +  +++ q  ++ y+rw + ++++
  MMETSP1174-20130828|34400_1  13 QKVVKEDDELEKKCQRLlGDEFQKKFQRSQ---EDFDQKLQRCQEIYDRWDKAKKKN 66 
                  5677888888888888527*********97...8899*************7766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 327.70
//
Query:       MMETSP1174-20130828|34473_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.53
# Mc/sec: 214.17
//
Query:       MMETSP1174-20130828|34480_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 243.35
//
Query:       MMETSP1174-20130828|34496_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-140  465.6   0.8      5e-72  240.7   0.1    2.1  2  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.7   0.1   1.2e-75     5e-72       1     189 [.      37     239 ..      37     249 .. 0.92
   2 !  223.6   0.0     2e-70   8.1e-67     191     371 ..     260     462 ..     252     467 .. 0.83

  Alignments for each domain:
  == domain 1    score: 240.7 bits;  conditional E-value: 1.2e-75
    TIGR01034   1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyte........aelGfdaktiavleaieeqspdiaqgvekeke.eelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednk.....pvkvdtvvlstqhdee 189
                  lf sesv eGhPdki+d +sd vLda+lk d++skvace+++k+++v+++Geitt+a +d++ ++r+++k+iGy++         ++G+d++t+ v   i++qspdia gv+  k+  ++gaGdqgimfGya +ete+++Pl+ l+a +l k l+++rk+g l +Lrpd+k+qvt+ey +n      p++++tvv+stqh+e 
  MMETSP1174-20130828|34496_1  37 LFSSESVNEGHPDKICDMVSDGVLDACLKADPYSKVACETACKDNMVMVFGEITTKAELDYDAIVRNTVKNIGYDSfvddltstVSKGLDYQTCEVQIRINKQSPDIAGGVHVGKSeMDVGAGDQGIMFGYASDETEDCMPLTHLMATRLGKVLTDVRKSGLLWWLRPDGKTQVTIEYVTNAdgsvePIRIHTVVISTQHAEP 239
                  699***********************************************************************8533333322579*************************8776489***********************************************************999888899*************875 PP

  == domain 2    score: 223.6 bits;  conditional E-value: 2e-70
    TIGR01034 191 slkelreaiieeiikpvlpkelld...........ektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevqlsyaigvaePvsisvetfgtek..kseeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgre.........efpWekldkve 371
                  s++e++e i++e++ ++l++  l+           +  +++inP+G+f+iGGP+gd+GltGrkii+dtyGg+++hGGgafsGkdp+kvdrsaay+ r +ak++v+agl++r++vqlsyaigva+P+s+ vet+gtek   s++ +++v+k +fd rp +i  +L L++p y++taay hfgr           f+Wek+  ++
  MMETSP1174-20130828|34496_1 260 SMAEMNELIVQEVVIKTLESITLKngnsavsifdlNTCHMHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRRMAKSVVKAGLSKRALVQLSYAIGVAKPLSLFVETYGTEKggISADDITNVIKLNFDCRPGGIALSLTLREPKYQQTAAYCHFGRLpetqeggvlAFEWEKPVDLT 462
                  66777777777777777764333211111111111345789***********************************************************************************************9556899**************************************8543445566567788876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 1613.57
//
Query:       MMETSP1174-20130828|34523_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 221.55
//
Query:       MMETSP1174-20130828|34531_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    5.6   9.0        3.7    5.5   6.3    1.0  1  TIGR02557 HpaP: type III secretion protein HpaP


Domain annotation for each model (and alignments):
>> TIGR02557  HpaP: type III secretion protein HpaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.3    0.0009       3.7      43     105 ..       6      68 ..       3      70 .] 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0009
    TIGR02557  43 epppscdedrPepaaetraseapaeapldadPalepdalkaeahesaiasraadarvvsvive 105
                  ep  +++e+ Pep+     +e+p e+  +a P lep a kae++ +  +  + + ++v +ive
  MMETSP1174-20130828|34531_1   6 EPVAEAEEATPEPEPVAEIAEEPVEEVPEATPKLEPVAEKAEEPVAEAKEATPEPELVAEIVE 68 
                  567789*************************************99998887777888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 249.71
//
Query:       MMETSP1174-20130828|34552_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 635.39
//
Query:       MMETSP1174-20130828|34558_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.60
# Mc/sec: 156.19
//
Query:       MMETSP1174-20130828|34579_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1174-20130828|34598_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.50
# Mc/sec: 161.03
//
Query:       MMETSP1174-20130828|34678_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.55
# Mc/sec: 127.19
//
Query:       MMETSP1174-20130828|34683_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-31  105.7   6.2    1.1e-30  105.1   4.3    1.2  1  TIGR00869 sec62: protein translocation protein, Sec62 family


Domain annotation for each model (and alignments):
>> TIGR00869  sec62: protein translocation protein, Sec62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   4.3   2.6e-34   1.1e-30       4     209 ..      45     244 ..      43     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 2.6e-34
    TIGR00869   4 hkelkqrpgilngkrsdffrvkrvvraleseeykq..kkakqneklPeissreeaieilklliinq...mvvrvdklpsqeakemkqk.pekdlpelqvnrkqeleddmyyvwlynPlplttyllavlvvavilalvlfPlwPiflrkGayylslGalGvigvffavailrlvlfvltlvvvkpGiwifPnllad.vGfvdsfkPlysfhekd 209
                  +k++k+r g+ln  r ++f+  r++r l  ee ++  kk+k ++++  i  + ea  + k l  nq   m v+v k p        qk p+k++   +v++++ + +  yyvw+++   + + +l+ l v   l + +fP+wP f++   +yls+  l    v+f+   +r+++f + ++ +   +w++Pnl+++   +vdsfkPlysf++++
  MMETSP1174-20130828|34683_1  45 RKNIKNRSGVLNENRCEYFKGDRLIRCLLPEEDAKdkKKKKLPKIMDCIVDKAEADAVAKALFENQnffMKVNVVKEPG-------QKvPQKEIR--VVKNQKPWVELGYYVWIWDGDQMWNQVLTGLLVGCFLLVTCFPIWPNFMKLALWYLSVTLL---IVMFVTLTIRFIMFLFVWI-FGFEFWVLPNLFDEsLTVVDSFKPLYSFEKTK 244
                  799***********************9976665441144445666666677*************995444455555555.......441444443..577888899999*********************************************9754...566888889*****99986.5678********76379***********9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1302.97
//
Query:       MMETSP1174-20130828|34710_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 459.09
//
Query:       MMETSP1174-20130828|34717_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 343.17
//
Query:       MMETSP1174-20130828|34746_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|34770_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 233.52
//
Query:       MMETSP1174-20130828|34788_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1174-20130828|34796_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   34.4   1.1    4.6e-05   21.1   0.1    2.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
       0.01   12.5   0.0      0.016   11.9   0.0    1.3  1  TIGR01613 primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   2.7e-05     0.056       2      26 ..      34      58 ..      33      72 .. 0.82
   2 !   21.1   0.1   2.3e-08   4.6e-05      41     127 ..     178     271 ..     172     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.7e-05
    TIGR00231  2 keikivivGhvdvGKstLlnsllkn 26
                 k+ik++++G +++GKst++++++  
  MMETSP1174-20130828|34796_1 34 KKIKLLLLGAGESGKSTIFKQMKIL 58
                 789****************997655 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.3e-08
    TIGR00231  41 yvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdiv.........ilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.d 127
                  + te+ +++G    +++ D++Gq+  ++ + + +++v+++++vv ++            ++++++le ++  ++     +++ ++l++nK+Dl + +
  MMETSP1174-20130828|34796_1 178 ILTEKYQIEG--NMFEMYDVGGQKNERKKWIHCFEDVTAVIFVVALSeydqslfedTSTNRMSDALELYDVNVNTRHF-QNSSVMLFLNKCDLFEkK 271
                  6788899999..56*****************************98863333211111234556666666666655554.8************98733 PP

>> TIGR01613  primase_Cterm: phage/plasmid primase, P4 family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     8e-06     0.016      73     110 ..      32      68 ..      19     111 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8e-06
    TIGR01613  73 tseqklffLfGnGanGKstfqqvlsnllGdyavtaeas 110
                  ++++  + L+G+G++GKst+ + ++ l G +a + e  
  MMETSP1174-20130828|34796_1  32 EQKKIKLLLLGAGESGKSTIFKQMKILYGTKA-SDEEM 68 
                  566777899**********************9.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1191.29
//
Query:       MMETSP1174-20130828|34811_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   11.5   1.1      0.069   11.1   0.3    1.6  2  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   1.7e-05     0.069      26      42 ..       2      18 ..       1      20 [. 0.88
   2 ?   -2.4   0.0      0.27   1.1e+03      27      49 ..      40      47 ..      35      52 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
    TIGR01639 26 vnrndmlsiWnqvveie 42
                 +n  dm +iW++++++e
  MMETSP1174-20130828|34811_1  2 TNWDDMEKIWHHTFYNE 18
                 56789*********998 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.27
    TIGR01639 27 nrndmlsiWnqvveierekfvkm 49
                 n               re ++++
  MMETSP1174-20130828|34811_1 40 N---------------RERMTQI 47
                 4...............4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 245.12
//
Query:       MMETSP1174-20130828|34816_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.49
# Mc/sec: 369.03
//
Query:       MMETSP1174-20130828|34822_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.8   0.0      0.013   13.6   0.0    1.1  1  TIGR03047 PS_II_psb28: photosystem II reaction center protein Psb28


Domain annotation for each model (and alignments):
>> TIGR03047  PS_II_psb28: photosystem II reaction center protein Psb28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-06     0.013      43      80 ..      11      48 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-06
    TIGR03047 43 sktkeitglyliDeEGeletrevkakfvnGklkaveav 80
                 + t+ ++g+ +  +E  l++++++++fvn  ++ v++ 
  MMETSP1174-20130828|34822_1 11 AATHPVKGIAMYGQESSLHVQDSHTNFVNAPPQLVKTN 48
                 5567899***********************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|34840_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 201.65
//
Query:       MMETSP1174-20130828|34850_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1174-20130828|34890_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|34896_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-09   33.4   0.0    2.5e-08   30.7   0.0    1.9  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.8e-08   31.0   0.0      1e-07   29.2   0.0    1.7  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.8e-06   25.3   0.0    2.7e-06   24.6   0.0    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.3e-06   24.5   0.1    2.9e-06   24.2   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.7e-05   22.4   0.0     0.0012   16.3   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    5.3e-05   20.8   0.0     0.0007   17.1   0.0    1.9  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
     0.0003   17.5   0.0    0.00051   16.7   0.0    1.3  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.2e-11   2.5e-08     294     371 ..       4      78 ..       1      84 [. 0.90
   2 ?    0.6   0.0     0.056        33     178     199 ..     105     126 ..      96     134 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.2e-11
    TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  ++  ++++gnLP+d+++  + +L  ++G +    l           +aF+ ++d  ++d A+ + +G +lg+++L v 
  MMETSP1174-20130828|34896_1   4 EEGRRIFVGNLPMDIRERDIEDLFYKYGRMSDIHLK---TPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVE 78 
                  6778**************************998874...3445678*****************************986 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.056
    TIGR01642 178 rlyvgniPpeakeeavvdFfnd 199
                  r++v+++P  a  +++ d f +
  MMETSP1174-20130828|34896_1 105 RVIVTGLPHSASWQDLKDHFRQ 126
                  8889999999998888888876 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.7e-10     1e-07     220     296 ..       7      80 ..       2      89 .. 0.92
   2 ?   -0.5   0.0      0.18     1e+02     120     146 ..     104     130 ..      95     137 .. 0.70

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.7e-10
    TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgla 296
                  ++++vGnl  +i E ++ ++F  +G++ ++ l+  +       + Fi+F d   a +A     G  l G  ++v  +
  MMETSP1174-20130828|34896_1   7 RRIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSR---PPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIV 80 
                  79******************************98765...599******************************9876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.18
    TIGR01622 120 rtvfvlqlalklreRdlkEFFskvgkv 146
                    v+v  l+  +   dlk+ F ++g v
  MMETSP1174-20130828|34896_1 104 FRVIVTGLPHSASWQDLKDHFRQAGDV 130
                  446777777777777777777777766 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.6e-09   2.7e-06     181     245 ..       9      71 ..       4     135 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.6e-09
    TIGR01628 181 lYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                  ++v nl+ ++ e  +++lF k+G+++ +  k+ ++    +faf+ +++  dA  Av   +g +++
  MMETSP1174-20130828|34896_1   9 IFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPP--AFAFITFDDRRDADDAVRGRDGYSLG 71 
                  6788888888888888888888888877776655444..58888888888888888777776666 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.9e-09   2.9e-06      56     125 ..       4      71 ..       1      82 [. 0.89

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 4.9e-09
    TIGR01648  56 erGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeir 125
                  e G  +fvG +P d+ e ++  lf k G++ ++ l      +   +af+tf ++++a +av+  + y + 
  MMETSP1174-20130828|34896_1   4 EEGRRIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKT--PSRPPAFAFITFDDRRDADDAVRGRDGYSLG 71 
                  67999***************************99865..677889********************99875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     2e-06    0.0012      91     334 ..       8      69 ..       2      83 .. 0.54
   2 ?    4.1   0.0      0.01       6.1      92     117 ..     106     131 ..      92     137 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2e-06
    TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGyt 334
                   ++v  lP  +  +++e lf ++G++  s i  +          fi fd r +ad a+++ +G                                                                                                                                                                                   y+
  MMETSP1174-20130828|34896_1   8 RIFVGNLPMDIRERDIEDLFYKYGRM--SDIHLK-TPSRPPAFAFITFDDRRDADDAVRGRDG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YS 69 
                  45566666666666666666666664..333322.2234445566666666666666655544...................................................................................................................................................................................44 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.01
    TIGR01661  92 lyvsGlPktmtqkeleslfspfGkii 117
                  + v+GlP + + ++l   f++ G ++
  MMETSP1174-20130828|34896_1 106 VIVTGLPHSASWQDLKDHFRQAGDVV 131
                  679********************987 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0007     196     253 ..       9      63 ..       4      72 .. 0.91
   2 ?    1.7   0.0     0.058        34     185     223 ..      93     133 ..      79     137 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.2e-06
    TIGR01659 196 lyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeais 253
                  ++v nlp  i + +++ +f kyg++ +      k   +p   af+ f+ r +a++a+ 
  MMETSP1174-20130828|34896_1   9 IFVGNLPMDIRERDIEDLFYKYGRMSDI---HLKTPSRPPAFAFITFDDRRDADDAVR 63 
                  79*********************99764...558999*****************9985 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.058
    TIGR01659 185 rpgge..sikdtnlyvtnlprtitddqldtifgkygsivqk 223
                  rpgg   +  d  + vt lp + + ++l+  f + g +v  
  MMETSP1174-20130828|34896_1  93 RPGGGagEHSDFRVIVTGLPHSASWQDLKDHFRQAGDVVYT 133
                  66664113456667777777777777777777777777765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.6e-07   0.00051     203     274 ..       8      77 ..       2      83 .. 0.88
   2 ?   -3.9   0.0       1.6   9.1e+02     200     228 ..     103     131 ..     100     134 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.6e-07
    TIGR01645 203 ri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrv 274
                  ri v  +  d+ e d+  +f  +G++ + +l    t  +   f f+ f++++  ++a+ + + + lGG  lrv
  MMETSP1174-20130828|34896_1   8 RIfVGNLPMDIRERDIEDLFYKYGRMSDIHLK---TPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRV 77 
                  666999999******************98884...344567899****************************9 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 1.6
    TIGR01645 200 kfnrivasvhpdlseedlksvfeafGeiv 228
                   f  iv+ +    s +dlk  f   G++v
  MMETSP1174-20130828|34896_1 103 DFRVIVTGLPHSASWQDLKDHFRQAGDVV 131
                  57445888888888899999988888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 423.59
//
Query:       MMETSP1174-20130828|34949_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|34952_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 227.31
//
Query:       MMETSP1174-20130828|34977_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|34974_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-41  139.7   0.0    1.7e-22   78.2   0.0    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    6.7e-39  132.0   0.1    7.7e-20   69.2   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    5.4e-23   79.1   0.0    6.2e-11   39.3   0.0    2.0  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.5e-22   77.3   0.0    2.7e-10   38.2   0.0    2.1  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.8e-18   64.1   0.0    3.9e-09   34.4   0.0    2.1  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.9e-15   53.9   0.0    2.5e-08   31.0   0.0    2.2  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
      3e-15   53.8   0.0    4.8e-08   30.0   0.0    2.0  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      1e-07   29.1   0.0     0.0008   16.3   0.0    2.1  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0     1e-19   5.3e-17     280     364 ..      78     164 ..      73     169 .. 0.90
   2 !   78.2   0.0   3.2e-25   1.7e-22     269     367 ..     168     268 ..     164     269 .] 0.93

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 1e-19
    TIGR01628 280 kekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld..ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrk 364
                  +e a+ + lYv Nl+ +++de+L + F+efG+++Sa+ +++  +  + +gFGFV+f+s e A +A   l+g+ ++g+ L v +A  k
  MMETSP1174-20130828|34974_1  78 VEVAKEPKLYVGNLNYGIEDEDLERIFSEFGSVVSANHIISreDPTRKRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFASNK 164
                  56788999****************************966553277899***********************************9987 PP

  == domain 2    score: 78.2 bits;  conditional E-value: 3.2e-25
    TIGR01628 269 kakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekS..kgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqR 367
                  k+ f++ +q r  +  g  +Yv Nld +  d +L e+F+efGe++S++ m+d+ + S  +gFGFV+fss++eAnkAv++l+g  ++g+ + v++Aq +  R
  MMETSP1174-20130828|34974_1 168 KRDFSQPRQSRPPQDDGCRVYVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQDDPSrkRGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIAQPRPSR 268
                  7889999********************************************977665337************************************98776 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   3.6e-20   1.8e-17     218     300 ..      82     166 ..      74     184 .. 0.85
   2 !   69.2   0.0   1.5e-22   7.7e-20     220     297 ..     185     263 ..     171     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 3.6e-20
    TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvq..lqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vt 300
                   + kLYvGnl + i +++L  iF  FG++ + +  + +++ t r +G+GF++F  +e a +A  +l G ++ GR +kv +as+   
  MMETSP1174-20130828|34974_1  82 KEPKLYVGNLNYGIEDEDLERIFSEFGSVVSANhiISREDPT-RKRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFASNkPS 166
                  4679*************************9886557888888.************************************9987434 PP

  == domain 2    score: 69.2 bits;  conditional E-value: 1.5e-22
    TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpe.tGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                   ++YvGnl ++ +++ L ++F  FGe+++ + + D++   r +G+GF++Fs a+ea +A e+l Gle+ GR i+v  a+
  MMETSP1174-20130828|34974_1 185 CRVYVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQDdPSRKRGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIAQ 263
                  69****************************999886415799*********************************9876 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.1e-13   1.6e-10     295     375 ..      82     163 ..      74     173 .. 0.89
   2 !   39.3   0.0   1.2e-13   6.2e-11     292     373 ..     180     262 ..     168     265 .. 0.91

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 3.1e-13
    TIGR01642 295 sedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGl.sKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                  +e kly+gnL + ++d+ +  +  +FG + + n i  +++    +G++F+ +     ++ A aaL+G ++ ++ L+v +A+ 
  MMETSP1174-20130828|34974_1  82 KEPKLYVGNLNYGIEDEDLERIFSEFGSVVSANHIISREDPTrKRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFASN 163
                  5789*************************9999887777765156**********************************985 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 1.2e-13
    TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsK.GyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                    d+  ++y+gnL ++  dd + e+  +FG++k+ n + d+++ + K G++F+ +  +  ++ A++ L+G+++ ++ + v  A
  MMETSP1174-20130828|34974_1 180 PQDDGCRVYVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQDDPSRKrGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIA 262
                  568888************************************988766**************************999999876 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.6e-13   4.9e-10     272     349 ..      86     165 ..      30     167 .. 0.89
   2 !   38.2   0.0   5.2e-13   2.7e-10     270     345 ..     185     262 ..     174     268 .. 0.61

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 9.6e-13
    TIGR01661 272 ifvynlspdtdeavl.qlfgpfGavqsv.kiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnka 349
                  ++v nl    ++  l ++f++fG+v+s   ii   +  + +G+gfv+ +  + a  a ++l+G ++ +r l+v f +nk+
  MMETSP1174-20130828|34974_1  86 LYVGNLNYGIEDEDLeRIFSEFGSVVSAnHIISREDPTRKRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFASNKP 165
                  78999999888877769*******99872577767778889************************************997 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 5.2e-13
    TIGR01661 270 ycifvynlspdtdeavl.qlfgpfGavqsvkiirdltt.nkckGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                    ++v nl  +t +  l  +f++fG v+s   + d +   + +G+gfv+ +  dea +a++ l+G ++ +r ++v + 
  MMETSP1174-20130828|34974_1 185 CRVYVGNLDYQTSDDTLnEMFSEFGEVKSCNHMTDQDDpSRKRGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIA 262
                  456666666665444443677777777776666665431455577777777777777777777777776666666544 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   7.5e-12   3.9e-09     189     264 ..      79     155 ..      73     170 .. 0.86
   2 !   27.7   0.0   8.1e-10   4.2e-07     101     186 ..     178     264 ..     161     268 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 7.5e-12
    TIGR01659 189 esikdtnlyvtnlprtitddqldtifgkygsivqkn.ilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggs 264
                  e  k+  lyv nl+  i d++l+ if  +gs+v  n i+      + rg  fv f   e a+ a +al+    eg s
  MMETSP1174-20130828|34974_1  79 EVAKEPKLYVGNLNYGIEDEDLERIFSEFGSVVSANhIISREDPTRKRGFGFVTFASLESAEAAAAALDGQNIEGRS 155
                  5668899**************************98855555566789*********************988778765 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 8.1e-10
    TIGR01659 101 ndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdykt.gysfgyafvdfaseadsqraikslngitvrnkrlkvsyarp 186
                  + ++ +g  + v  l  + +d  l  +f   g + +c  m d        g++fv f+s  ++ +a+++l+g+ v  + ++v  a+p
  MMETSP1174-20130828|34974_1 178 RPPQDDGCRVYVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQDDpSRKRGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIAQP 264
                  556777888888888889999999999999999999999999865256789999999999999999999999999999999998887 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.5e-08   2.3e-05     235     314 ..      85     173 ..      71     179 .. 0.78
   2 !   31.0   0.0   4.9e-11   2.5e-08      53     132 ..     179     259 ..     172     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.5e-08
    TIGR01648 235 ilyvrnlmletteeiieksfsefkpGavervkki.........rdyafvhfedredavkamdelnGkeleGseievtla..kPvdkesyvr 314
                   lyv nl   + +e +e+ fsef  G+v     i         r + fv f + e a  a  +l+G+++eG ++ v +a  kP  k ++++
  MMETSP1174-20130828|34974_1  85 KLYVGNLNYGIEDEDLERIFSEF--GSVVSANHIisredptrkRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFAsnKPSPKRDFSQ 173
                  49*********************..66544433323322223288*****************************99887668999988875 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 4.9e-11
    TIGR01648  53 aqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdld..GknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                  ++ + Gc v+vG +     +d l  +f + G++     m d d   + rG+ fvtf+  +ea++av +l+  e+ +Gr + v
  MMETSP1174-20130828|34974_1 179 PPQDDGCRVYVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQDdpSRKRGFGFVTFSSADEANKAVENLDGLEV-DGRSIRV 259
                  55568999999999999999999999999999999999999662357899999999999999999999999998.4665555 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.2e-08   1.7e-05     205     279 ..      88     163 ..      71     180 .. 0.59
   2 !   30.0   0.0   9.4e-11   4.8e-08     107     180 ..     185     265 ..     184     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.2e-08
    TIGR01645 205 vasvhpdlseedlksvfeafGeivkck..laraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavt 279
                  v  +   + +edl  +f  fG +v+ +  ++r+    + +GfGf+ f+ l+s + a a+++  ++ G+ l+v  a  
  MMETSP1174-20130828|34974_1  88 VGNLNYGIEDEDLERIFSEFGSVVSANhiISREDP-TRKRGFGFVTFASLESAEAAAAALDGQNIEGRSLKVDFASN 163
                  55566666666666666666666665421233333.33466666666666666666666666666666666644433 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 9.4e-11
    TIGR01645 107 srv.vGsisfelkedtlrrafdPfGPiksinmsWdp.vtqkhkgfafve.evPeaallaleqmngallGGrnlkvg....r 180
                  +rv vG + ++  +dtl + f+ fG +ks n   d     + +gf fv     + a  a e+++g  + Gr ++v+    r
  MMETSP1174-20130828|34974_1 185 CRVyVGNLDYQTSDDTLNEMFSEFGEVKSCNHMTDQdDPSRKRGFGFVTfSSADEANKAVENLDGLEVDGRSIRVNiaqpR 265
                  9*****************************9666651567889*****988899999******************944433 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0008     117     191 ..      85     162 ..      28     177 .. 0.76
   2 !   11.1   0.0   6.1e-05     0.031     295     371 ..     181     262 ..     166     265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-06
    TIGR01649 117 rvivenllypvtlDvlyqifnrvGkVl...rivifkknnsvq..AlvefesvesAqkAKaaldgadiYngCCtLkidyak 191
                  ++ v nl y ++ + l +if+++G V    +i+  + ++      +v f+s esA++A aaldg++i      Lk+d+a 
  MMETSP1174-20130828|34974_1  85 KLYVGNLNYGIEDEDLERIFSEFGSVVsanHIISREDPTRKRgfGFVTFASLESAEAAAAALDGQNIEG--RSLKVDFAS 162
                  46799********************973335666655554432268*********************64..479999984 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6.1e-05
    TIGR01649 295 sglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilkn......kketalvemadpqqaqlalthLdkvklfgkklrvavS 371
                  +  g+ + v nL+ +    d+l  +f+ +G+v+  + +        k++ ++v ++  ++a++a++ Ld++++ g+ +rv ++
  MMETSP1174-20130828|34974_1 181 QDDGCRVYVGNLDYQ-TSDDTLNEMFSEFGEVKSCNHMTDqddpsrKRGFGFVTFSSADEANKAVENLDGLEVDGRSIRVNIA 262
                  455677888999865.5789999***************8622222256779****************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.76
# Mc/sec: 467.17
//
Query:       MMETSP1174-20130828|34979_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1174-20130828|35022_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       408  (0.0994637); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|35045_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.1e-248  820.8   5.1   9.5e-248  820.5   3.5    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   9.5e-136  451.4   5.2   1.3e-135  450.9   3.6    1.2  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   1.5e-123  410.9   4.7   1.9e-123  410.5   3.2    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   2.6e-123  410.4   4.0   3.2e-123  410.1   2.7    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   9.2e-103  342.4   6.2   1.2e-102  342.1   4.3    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
   3.8e-101  337.0   6.2   5.3e-101  336.5   4.3    1.1  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
     4e-101  337.1   6.7   6.1e-101  336.5   4.6    1.2  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    5.8e-83  277.0   2.8    7.6e-83  276.6   1.9    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.9e-81  271.3   2.4    3.9e-81  270.9   1.7    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.3e-20   71.2   5.8    9.2e-13   45.3   0.6    2.3  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  820.5   3.5  2.3e-250  9.5e-248       2     523 .]      25     546 ..      24     546 .. 0.99

  Alignments for each domain:
  == domain 1    score: 820.5 bits;  conditional E-value: 2.3e-250
    TIGR02345   2 ptivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskekavvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhak.kgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikakks 523
                  p i+ll+egtd+sqG+ ql+sninac+a+a+ ++ttlGPrGmdkli + +k ++sndGa i+klld+vhPaak+lvdi+ sqd+evGdGttsvv+lag++l+++kp++e+ +hpq+i++++r+a ++a+++l+eiav +d  k++ r++le  a tal+skli+++k+ f+ mvvdav sld d++d + l+Gvkkv GG +++s+lv+GvafkktfsyaGfeq  k+f+nP illlnvelelk+ek+nae+r++d+ dy++ivdaew+ii++kl+k+v+sGa+++lsk++iGdlatqyfadr++fcaGrv+  d+krv++atG++++s+v+dl++ vlGkc+ feekq+G+er+n ft + +ak++t++lrGg+eqf+ee+ rs+hda+miv+r l ++++vaGGGaie+e+sk lr +++++dgk+qlii a+akaleviPr+l++naGfd++ +lnklr+kha+ ++++w+Gvd+++e+i d++ + vweP++ k+n  +aa+eaa++ils+det+++++s
  MMETSP1174-20130828|35045_1  25 PGIILLREGTDSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDGNKVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVD--KESSRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCSLDLDNVDIHaLVGVKKVPGGDVTQSFLVEGVAFKKTFSYAGFEQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQeENGMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVRNPQS 546
                  789****************************************************************************************************************************************9..7888**************************************99965499***********************************************************************************************************************************************************************************************************************************************************************************6677**************************************************986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.9   3.6  3.3e-138  1.3e-135       2     519 ..      27     542 ..      26     544 .. 0.96

  Alignments for each domain:
  == domain 1    score: 450.9 bits;  conditional E-value: 3.3e-138
    TIGR02339   2 vlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve.dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdld.nikiekkkGgsiedtelveGivvDkevvh...egmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegn.knagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  +++l+egt+ ++g   l sni+a  ava+++++tlGPrG+Dk++ d+   vti nDGa i+k +d+ hPaak lv+++ +qd+evgDGtt++v+laG++l++ +  +e+ +hP +i++G rkaae a+  ++eia  +d+e  +++l+  a t+l+sk + +++kd+   +vv+av ++     d   +vd++  + ++k  Gg+++++ lveG+   k       e+m k+++n+ i+ll+++le++  + +a+++it+p   ++ +d+e +++ ++ dk +++Ga+++++++ i dla +y+a++ ++   rv   D++++a atG+ + s++++++e+ LG+ +  ee++vge++    + + nak+ ti+lrGg+e+ ++e  R+++Dal +vk  l++ +vvaGgGa+e+e++k+lr +a+++ G+eql + afa+ale ipr l +naG+d+  +l +lR+kh++e+n ++ gvdv + +i d++  +v+ep+  k +  ++a+eaa +il iD+ ++
  MMETSP1174-20130828|35045_1  27 IILLREGTDSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDGN-KVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKEsSRNMLEVFAGTALNSKLI-SNHKDLFCPMVVDAVCSLDL---D---NVDIHaLVGVKKVPGGDVTQSFLVEGVAFKKTFSYagfEQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEENgMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVR 542
                  799*******************************************99.9****************************************************************************************998468899999**********.69*************54433...3...36665158899********************976522378**************************************************************************************************************************************************************************************************************************************************98764789******************************************9875 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.5   3.2  4.7e-126  1.9e-123       2     520 ..      27     541 ..      26     546 .. 0.97

  Alignments for each domain:
  == domain 1    score: 410.5 bits;  conditional E-value: 4.7e-126
    TIGR02344   2 vlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvk.ssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp...kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe.ekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                  +++l++ t+ ++G    +sni+a+ avad irttlGp+ m k+++d    + ++ndG +i++ +dv hpaak+l+++s +qd evGdGttsv++laG++l++++pf+e  +hp +i+++ +ka e a+  lee+++pvd e++ ++l++   +++ +k++s+++dl + + +dav  + l++       vdi   + v+k+pGG++++s +++Gv + k    +   +m ++  np i+ll++ le k  + +++v i++  d++++++ e   +    ++ +++ ++++++++ + dla  y++ +++    rv  +d +r+a ++G  + + v++l+e  +G ++G fe k++G+e f  +t c + k+ ti+lrG+s + ++e +r ++dal +++  l + ++v+GGGa+e++vs++l+ +a++++g eql++ a a+alevipr l  n+G ++   l++lr khaqe + +++G+d ++ +i d    ++wep   k +++ +a e+a+++l id+ v
  MMETSP1174-20130828|35045_1  27 IILLREGTDSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDGN-KVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKESSRNMLEVFAgTALNSKLISNHKDLFCPMVVDAVCSLDLDN-------VDIHALVGVKKVPGGDVTQSFLVEGVAFKKTFSYAgfeQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLG-KCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEeNGMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETV 541
                  78899999999999999*****************************85.799***********************************************************************************************99863789********************9998887.......9*****************************998765569****************************************************************************************************************9888.6*****************************************************************************************************************************98355789******************************************988 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.1   2.7  7.7e-126  3.2e-123       6     533 ..      35     547 ..      30     550 .. 0.93

  Alignments for each domain:
  == domain 1    score: 410.1 bits;  conditional E-value: 7.7e-126
    TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelg.kealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctva...sqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpee 533
                  ++++G      n+ a++ava+ ++t+lGP G+dk++ d    vti ndGa i+k+l+v hPaak lv+++  qd evGdGttsvv+la ++l++ + +v+++vhP ++++G r a++ av  ++e +av v++ + ++ l   a t+l sk+is++ dlf+ +vvdav ++   n   ++      v + k +G+ +++s+lv+G a++ t +    +qm+k+ +++ i+ll+++l+ +  k   ++ ++dp++ ++i + e  i+ ++++k +++Ga+++l  + i dla++y+ + ++++  rv+  d+kr+a atG+ + s++ dl        ++lG++ +++e++++++    +    ++k+a+i+lrG  +++++e +rs+hdal++vkr l s +vvaGgGa+e+ +s  l   a+t++ +eql i +fa+al +iP++l+ na+ d+t ++ klr  ha++      ++  ++G+d+ ++ i+d++   v ePa++k+ s  +a eaa  il id+ ++  + e
  MMETSP1174-20130828|35045_1  35 DSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDG-NKVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEE-IAVPVDKESsRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCSLDLDNVDIHAL-----VGVKKVPGGDVTQSFLVEGVAFKKTFSyagFEQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLT------EAVLGKCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQE------ENGMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVRNPQSE 547
                  56677777789***********************99986.68*******************************************************************************9976.6666766650555556699***************************999665544.....677788****************99865112589******************99999***********************************************************************************99874......569****************999999999***************************************************************************************************999865......4567**********************************************9976655 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.1   4.3  2.8e-105  1.2e-102      17     513 ..      44     542 ..      28     547 .. 0.92

  Alignments for each domain:
  == domain 1    score: 342.1 bits;  conditional E-value: 2.8e-105
    TIGR02341  17 lssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkg.stnleaiqiikkl.ggklddsyldegfllekkigvnq....pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnsta..gldleegeiadlrklgivesyklkravvssaaeaaevllrvdniik 513
                  +s +   +av d +++tlgp+gmdk++  +++   ++++ndga+i+k + +  paak lvdis+ qd evgdgttsv++la ++l++ + +v++++hpq+i++g r+a+++a   l++ av   ++    r+ l+  a t+l+sk++s++kd f+ + vdav  l     +++a+  +kk+ gg++++s+l eg  ++k++         k   n  il+ n  l+    k   + vr+   a    +  ae   + +k++k  + + ++++ +q i +   q fad ++ +    d + ++r+a+ tgg + st ++   + lg+c   ee  +ge+++  f+ +   ++ tivlrg ++q ++e+ rs+hdal ++ +  +  r+v+ggg+ e+ ++k++  +a+ v+gk+ l ++afakal+ +p  l+dnagfd++ ++ klr +ha+ ++ +  g+d+++ +i+d     + e    k    ++aaeaa v+l +d+ ++
  MMETSP1174-20130828|35045_1  44 VSNINACMAVADTIRTTLGPRGMDKLIFDGNK---VTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKE--SSRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCSLDLdNVDIHALVGVKKVpGGDVTQSFLVEGVAFKKTFSYAGfeqmEKEFTNPSILLLNVELELKSEK-ENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEENGMwfGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVR 542
                  34444568********************9998...99********************************************************************************999976555..789*******************************998741445556554555449****************997655000145566789********987666.6899**********************************************************************************************************************************************************************************************************************9988876669********************99*******************9987 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.5   4.3  1.3e-103  5.3e-101      12     514 ..      44     541 ..      34     543 .. 0.93

  Alignments for each domain:
  == domain 1    score: 336.5 bits;  conditional E-value: 1.3e-103
    TIGR02342  12 tsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls.drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkkl.GgtiddtelieGvvltqkasksaggp..triekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGe..ktaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                   sni a  avad+irt+lGp+Gmdkli +++ +v+i+ndGa+i+k l+v+hpaak lv++s +qd e GdGttsvv+laG +l+ ++ ++e  +hp+ii +++++aa+ a+  l+e++ pvd++  r++l   a t+l+sk++s++ +l++p+ vdav ++       nvd++ +  vkk+ Gg + ++ l+eGv +++++s +  ++  +   +  i l++  l     + +++v ++d a+   ++  e + i +  +k  ++ga ++l ++      + dla  ++a +k+++   ++  +++ ++ + G    + ++ lt+  lGk    ee ++++ +    t ++ ++kt ++++rG  +  i+e++rs+hdal +++  +  r ++aGGGa e+e+++ l+ +ar+++G e++i+ afa+alevip  l +naG+++  v+ +lr++haq e  +  G++v +  i d++  +v  p++ +  + t a+e+  +il id+ v
  MMETSP1174-20130828|35045_1  44 VSNINACMAVADTIRTTLGPRGMDKLIFDGN-KVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKEsSRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCSLDL----DNVDIHALVGVKKVpGGDVTQSFLVEGVAFKKTFSYAGFEQmeKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQ-----PIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCT-NAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEEngMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETV 541
                  59**************************997.8****************************************************************************************985379999999**************************9865....69******9999998999*************999975444311445678899999999877666777899********************************99765.....679**********************************************************99987777665.5799***************************9999999******************************************************************98833568******************************************977 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.5   4.6  1.5e-103  6.1e-101      10     530 ..      25     542 ..      18     544 .. 0.94

  Alignments for each domain:
  == domain 1    score: 336.5 bits;  conditional E-value: 1.5e-103
    TIGR02343  10 pfiiikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshp...qmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkekn.palGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  p ii+  ++     +G+    sni a+ ava ++rt+lGp+G+dk++ +  +++t++ndGa+i++ +d+ ++ ak lv++s sqd e+GdGtt+vv+la+ +l+q +  ++  +hp  i +G  kaa+vav++leeia  ++  e  +++l   a t+l sk++s++k+ +  ++vdav +  dl+  d++  l+ v++  Gg++ ++ l++G+  +k +s+    qm+ke  +  i +l   +e    k   ++ i+ + +y+++ + e +   + +d++ +sGa++++ +    d a + + +++l     v   +++ +a+atgG + +  ++l+e  lGk++  +ek++G   +r+     ++++k+ ti++rGg++  iee++rs+hdal +v+  + ++r+v GGGa e+ +s ++ ++a  + g eq  i afa+ale ip  l++n+G+d  ++l ++++k  +e+n + +Gvd  +e   d    +v e+ i k++ ++ a++   +il id+ + 
  MMETSP1174-20130828|35045_1  25 PGIILLREGT-DSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDG-NKVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDK-ESSRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCS-LDLDNVDIH-ALVGVKKVPGGDVTQSFLVEGVAFKKTFSYAgfeQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGE--ERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEENgMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVR 542
                  5555544443.34689999**************************99875.68*************************************************************************************99987.556777777899**********************987.699999986.79***************************74444*******************************************************************************************************************************96..67777888*******************************************************************************************************99887772579******************************************9876 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.6   1.9   1.8e-85   7.6e-83       5     527 ..      30     545 ..      26     548 .. 0.94

  Alignments for each domain:
  == domain 1    score: 276.6 bits;  conditional E-value: 1.8e-85
    TIGR02347   5 lnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlf.mveilemkhklevdtklirGlvldhGarhP...dmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear..evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGk 527
                  l + +++++    l  n+na+ +++d ++t lGP+G  k++ +g  ++ +  dG  ++k l + hP+a+ +  ++ +qd  +GdGtts+v+l+g++l+q + ++e+ +hP+i+++G+  a + a+  le++ + +++e  r++l+  a t+l  kl  +  d ++ +vvdav ++  d+   d++ +v + ++     ++  l++G+ +   + +    +m+++ +n  il lnv le      n+++   +  + + +v+ae   + d++ k ++   +          +++ ++ i  l+ + +a +++++  r+   ++ r+ +a+GG  + +v+dlt+ +lG +G+  e+ +gee++   + ++n k+ ti+++g  ++ ++  + +++d l  vk  +  + vvaG ga+e+ ++k+l+ ++++v Gk++l + afa+al viP+ l +n+G+d++ vl kl++++ +++     gvd+++++ +++ l+++w+    k ++ ++a+  a+ +l +de +r  +
  MMETSP1174-20130828|35045_1  30 LREGTDSSQGIPQLVSNINACMAVADTIRTTLGPRGMDKLIFDGN-KVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKESSRNMLEVFAGTALNSKLISNHKDLFCPMVVDAVCSLDLDNV--DIHaLVGVKKVPGGDVTQSFLVEGVAFKKTFSYAgfeQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQ----------IILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHAQEEngMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVRNPQ 545
                  5556667777778999***********************999986.8******************************************************************************************************************************9988876..6653688899999999999*********9987642228*******************99999***************************998765444..........566668899************************************************************************************************************************************************************************9998776644789*********************************************9765 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.9   1.7   9.4e-84   3.9e-81       5     518 ..      29     542 ..      26     554 .. 0.92

  Alignments for each domain:
  == domain 1    score: 270.9 bits;  conditional E-value: 9.4e-84
    TIGR02346   5 llkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdn.irvvkllGgslsdsevlkGlvlkrea.....egsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah..kkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  ll+eG+ + +g+  +++ ni+a+  +++++rt+lGP+gm+kl+ +  +k+ ++nD a i++ l+v+hPaak lv++s  q+ e+GDgt  v+ lag++L++ + +++  ++p+ i+kG  +a++ a++ Lee+ v  v + ++++ l+    ++l sk ++n +d+++ +v +a+ ++  +   + ++   + v k+ Gg++++s +++G+ +k+       e   k+  +  +  ++  l+ ++      v + +  +      +e + i +++++  +sg+++i++   ++dla  y    k++        +++r++ + g  ++  ++  +   lG++   + + +g+++   +    + +k++tivLrG  ++++++  r+i+D + +vk  +   r+++G+ga e+e++k l+  a ++ g eq+ i  fa+a e+iPr l++naG++a+ vl+kL ++h  +++    g+d+++e++   d+  +++++    k+ +   a+eaa+ +L++D  + 
  MMETSP1174-20130828|35045_1  29 LLREGTDSSQGIP-QLVSNINACMAVADTIRTTLGPRGMDKLIFDG-NKVTISNDGASIMKLLDVVHPAAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAV-PVDKESSRNMLEVFAGTALNSKLISNhKDLFCPMVVDAVCSLDLD---NVDIHAlVGVKKVPGGDVTQSFLVEGVAFKKTFsyagfEQMEKEFTNPSILLLNVELELKSEKENAEVRITDPADYQSIVDAEWSIIYDKLDKCVQSGAQIILSKQPIGDLATQYFADRKLFCAGRVDPADMKRVAMATGGIMQSTVNDLTEAVLGKCGHFEEKQVGEERFNCFTLCTN-AKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLASRRVVAGGGAIEMEVSKSLRAHARTVDGKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKHaqEENGMWFGVDVDQEDI--CDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVR 542
                  899*****99997.5789************************9875.99***********************************************************************************976.5777778888999999********9989**********9988666...55555428899*******************975221224455678899****************************************************************999998899888777889********************************************98876.9*****************************************************************************************************544555667888888876..79999****************************9875 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.6   2.2e-15   9.2e-13      20     223 ..      52     261 ..      42     268 .. 0.77
   2 !   28.0   0.2   4.1e-10   1.7e-07     378     522 ..     392     543 ..     382     547 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 2.2e-15
    TIGR02348  20 kladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdk..eeiaqvatisa.......nndeeiGeliaea.....mekvgkdGvitveesksle.televveGmqfdrGyvspyfvtdaekmevelenplilitdk 223
                  ++ad++++tlGP+g + ++     + +i +dG ++ k +++ ++     ak + +++   +   GdGtt  ++la  i+++    v   + p  + +Gi ka+e +v++l++ + +v+++  +++ +v + +a       n  +    ++ +a     +++v  + ++ v++  + + t+  +veG+ f + +  +      e+me e+ np il+ + 
  MMETSP1174-20130828|35045_1  52 AVADTIRTTLGPRGMDKLIFDGN-KVTISNDGASIMKLLDVVHP----AAKTLVDISMSQDAEVGDGTTSVVLLAGQILHQVKPFVEDRVHPQIIMKGIRKAAEVAVARLEEIAVPVDKEssRNMLEVFAGTAlnsklisNHKDLFCPMVVDAvcsldLDNVDIHALVGVKKVPGGDvTQSFLVEGVAFKKTFSYAG----FEQMEKEFTNPSILLLNV 261
                  79************988776554.689********998877666....4666678888888899*****************************************************8762255666644444000111044444556888883333346777777888888877661555679*******997654....599***********9875 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.1e-10
    TIGR02348 378 kvGaatetelkekkarvedalnatraave.eGivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek.....kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvad 522
                   +   +e  + e    + dal   +  ++   +vaGGG+  ++++++l +   + +  e++ ++   +ale   rq+++naG d++ v++k+++k     +++ +G +  +++  d + + + +pa     + + aa  a ++l  + +v +
  MMETSP1174-20130828|35045_1 392 VLRGGSEQFIEESHRSIHDALMIVKRGLAsRRVVAGGGAIEMEVSKSLRAHARTVDgKEQLIISAFAKALEVIPRQLCDNAGFDATGVLNKLRQKhaqeeNGMWFGVDVDQEDICDTMLSNVWEPAINKINSYTAAAEAACVILSIDETVRN 543
                  5555677788899999*****998877652689****************9655555499999*****************************99873322234457999999999999999*****999999999999999999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 1304.49
//
Query:       MMETSP1174-20130828|35069_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|35091_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|35137_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1174-20130828|35141_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1174-20130828|35140_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-273  905.2  14.2   3.6e-273  905.0   9.8    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   2.1e-155  516.2  18.2   2.7e-155  515.9  12.6    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   4.2e-122  405.9  12.0     5e-122  405.7   8.3    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   8.1e-112  372.2  15.3   9.4e-112  372.0  10.6    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   5.2e-108  359.8  13.7   6.2e-108  359.5   9.5    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   4.6e-107  356.5  13.4   5.9e-107  356.1   9.3    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   6.3e-105  349.6  13.2   7.7e-105  349.3   9.1    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.6e-92  308.5   9.0    2.1e-92  308.1   6.2    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
      2e-88  295.1  11.5    2.6e-88  294.7   8.0    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    9.9e-14   48.5  11.3      4e-11   39.9   2.1    2.8  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  905.0   9.8  8.7e-276  3.6e-273       3     533 ..       2     532 ..       1     535 [. 0.99

  Alignments for each domain:
  == domain 1    score: 905.0 bits;  conditional E-value: 8.7e-276
    TIGR02340   3 lsGerksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpee 533
                  ++G+r+sG+dvr+ nv+a++a+anivk+slGP+Gldkmlvd++GdvtitndGatil++levehPaakvlvela+lqdkevGdGttsvvi+aaellkra+elvk+k+hPt+v+sGyrla++eavkyik++l+vs++elg e l+n+akts++ski+++++d+f+n++v+a+++vk+t+ +g+++yP+ a+++lk hG+s +es+lvkG+alnct+asqqmp+r+++akial+dfnlq++kl++gvq+vv+d++++e ir+re+di+keri+kil++Ganv+lttkGidd+++ky+veag++avrrvkkedlkr+a+a G+++v+slad+eG+e++++++lGe+e v+eer++d e+i ++g k+++++si+lrGand++ldem+r++hdalcv+kr+les++vvaGgGave+alsiyle++a t+gsreqlaiaefaeall+iPk+lavn a+d+tel+ klra+h+++q+++ek++lk+ Gldl +gk+rdn++aGv+ePa+sk+ksl+fatea++tilridd+ikl p+ 
  MMETSP1174-20130828|35140_1   2 IDGDRSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNLIVSTDELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSGEGKNRYPVSAIHVLKCHGRSSTESQLVKGFALNCTRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEGNEVFDPANLGECESVSEERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSQQDPEKANLKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIKLAPKP 532
                  79*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.9  12.6  6.5e-158  2.7e-155      10     519 ..       5     527 ..       2     529 .. 0.96

  Alignments for each domain:
  == domain 1    score: 515.9 bits;  conditional E-value: 6.5e-158
    TIGR02339  10 qrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevid.eiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeie......esdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakheke.......gnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  +r++g+d+++ n++a+ a+a++vks+lGP GlDkmLvds+GdvtitnDGatil+ +++ehPaak+lve a+ qd+evgDGtt++v++a eLl++a++L++++ihPt +++Gyr+a+++a++ i+ ++  + d+   e+l + a+ts++sk     ++d  a+++vea+++v +++ +gk    +  i++ k +G+s ++++lv+G  ++  +  ++mP+r+enakial+d++l+ +k ++ +++ +++ ++++   ++e ++ ke + ki d+Ganv++++kgiDd+  +y+ ++G +avrrvkk+D+++lara+G+++v sl ++e      +++LGe e+v+e++vg+ ++++++g+k  +av+i+lrG ++ ++de++Ra++Dal v+k vle+++vvaGgGavev+l+  l ++a++i+ reqla+  fa+al  ip++la n+  d+ +++ +lRa h ++       + k  g+d  +g++ d l++gv+ep+  k + ++ atea++ ilriDd+i+
  MMETSP1174-20130828|35140_1   5 DRSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKkNLIVSTDELGPEVLMNAAKTSMASKIL-GPQADFFANMAVEAITSVKTTSGEGKNRYPVSAIHVLKCHGRSSTESQLVKGFALNCTRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEgnevfdPANLGECESVSEERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSqqdpekaNLKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIK 527
                  79***********************************************************************************************************************996379999999999****************.699***********************************************************************************************************************************************************************9985222222678*****************************************************************************************************************************997641111111456789*******************************************96 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.7   8.3  1.2e-124    5e-122      12     520 ..       5     528 ..       2     531 .. 0.94

  Alignments for each domain:
  == domain 1    score: 405.7 bits;  conditional E-value: 1.2e-124
    TIGR02345  12 dtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk......liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdlead......vlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhak.kge.......kwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                  d s G+     n+ a +aia+i+k+ lGP G dk++v++    +++ndGatil++l++ hPaak+lv++a+ qd+evGdGttsvv++a+ellk a++l+++ +hp  ++ ++r a++ a++ +k++ +  +  ++   evl + a+t++ sk++  +++ff++m v+a++s+++   + k       i v k +G + ++s+lvkG a++ t +    +q P +++n ki+l++++l+ +  + + ++ v+d+++ + i + e +i  e+++ki++sGanv+l+ + i d+  +yf +    +  rv++edlkr+++a+G++++ +  d+e +      +lG+c+   e+++G     +++g++  +a+ ++lrG+ + +l+e++r++hda+++++r l ++++vaGGGa+e+ ls +l++ + +i  ++ql i  +a+al viP++la n   d++e++ klr+ h+  + +       k+ G+d+   ++ d+l+a v eP++ k+  l+ atea+ til +d+ ik+
  MMETSP1174-20130828|35140_1   5 DRSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGdVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNLIVST--DELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSGEGKnrypvsAIHVLKCHGRSSTESQLVKGFALNCTRA---SQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEGNevfdpaNLGECESVSEERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTsQ-QdpekanlKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIKL 528
                  66777777778*************************9998879*********************************************************************************9877655..445569**********************************98887777888889**********************98754...5899*******************************************************************************************************9999987642333338*******************************************************************************************************************************9852.33556667899*******************************************9985 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.0  10.6  2.3e-114  9.4e-112       4     514 ..       6     526 ..       3     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: 372.0 bits;  conditional E-value: 2.3e-114
    TIGR02342   4 kekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkil.kelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvids..ekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasi......dkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGe........ktaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  +   +dvr  n++a+ a+a+++++slGp G+dk++ ++ G+v+itndGatil+ lev hpaak+lvel++ qd e GdGttsvv++a  ll+ a++l++++ihpt++  +++ a+ ea+k + k+l  + d    e+l+++a+ts++sk++   ++++a +av+a+ +v+ +  e +++  +  i+v+k  G    +++l++G  l+ +   s+  ptrie+aki+li f l   k +m  qvvv+d ++++ + + e     + ++ki  +ganv+l  k i     +d++++++   + + v+ +++e+++ ++++ G + v s+      + + + +lG+ e v e +++d++++ + G+k  +++vs+++rG+n++++de +r++hdalcvi+ +++  +++aGGGa e+ +++ l + a ++   e++ + +fa+al vip tla n   ++ +++ +lr  h++ +        k+ G+++ +g++ d l+  v+ p++ +  ++++a+e+  +il+idd++
  MMETSP1174-20130828|35140_1   6 RSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIkKNLIVSTDELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTsgEGKNRYPVSAIHVLKCHGRSSTESQLVKGFALNCTRA-SQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGI-----DDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLadmegnEVFDPANLGECESVSEERVGDGEMIYLRGCKT-QRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSQqdpekanlKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMI 526
                  55679******************************************************************************************************************965167888999999********************************9998751155667789************************97666.6789***************************************************************9975.....89******************************99886653223334688999***********************86.679***************************************************************************************************876533333334689*******************************************98 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.5   9.5  1.5e-110  6.2e-108      21     530 ..       5     527 ..       2     529 .. 0.93

  Alignments for each domain:
  == domain 1    score: 359.5 bits;  conditional E-value: 1.5e-110
    TIGR02343  21 krlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadle...rkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelsee......klGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevka.....kql..keknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                   r  G+++   n++a+ a+a+i+++slGp Gldk+l++  gd+t+tndGatil++++++++ ak+lvel++ qd+e+GdGtt+vv++a+ ll++a++l+++ ihp  +  G+  a++ av+ +++    +s+de   e l++aakts++ski+  + + +a++av+a+ +v       ++   +  i+v +  G+s  +++l+kG  ++   +  qm+ ++++akia++   ++  k++   +++++ ++e + +++ e +  +e i +i +sGan+++   G dd   + +++++  avr v  ++l+ +a a gG++v  + +++ +      +lG+++ v e+++G     ++++  +k+ +av+i++rG+n+++++e  r++hdalcv++ +++++++v GGGa e+a+s+ +e+ a  + + eq ai  faeal  ip +la n   d  e + +++a     +q   k +    G+d      +d  +  v+e+ i+k++ +++at+    il+idd+i+
  MMETSP1174-20130828|35140_1   5 DRSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNL-IVSTDELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSgegKNRYPVSAIHVLKCHGRSSTESQLVKGFALNCTRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEGNevfdpaNLGECESVSEERVGD--GEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAfhstsQQDpeKANLKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIK 527
                  6899********************************************************************************************************************9988743.577777899********************************99876411144466899*****************************************************************************************************************************************99875422222279***********96..57***************************************************************************************************9999999886322223331122334569**999999**********************************986 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.1   9.3  1.4e-109  5.9e-107      10     520 ..       5     526 ..       2     531 .. 0.95

  Alignments for each domain:
  == domain 1    score: 356.1 bits;  conditional E-value: 1.4e-109
    TIGR02344  10 kresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvle.elsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfev.....kkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe.......ekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                  +r+sG+ ++++n++a+ a+a+i++++lGp  + kml+d++G + +tndG +il+ ++v+hpaak l+el+  qd+evGdGttsv+i+a ell+ a+++++++ihpt ++++y+ a+ +a+k ++ +l ++ d    + l+++ k+s+++k+ +  +d  +++a++a++ vk+++++g++    +   ++v k  G + ++s+++kG  ln   +  +m  +ien +i l+d +l+ +k +   +v + + ++++ + q e++  k+  ++i+++ +++++t kG+ d+  +y++ a+  a+rrv+k d +r+ar++G ++v    +++ ++v   a l e      +++Gd  + +l  ck  +a +i+lrGa   +l+e++r ++dal v++ vl + ++v+GGGa+e+a s +l++ a+++   eql +   a+al vip+tl+ n   ++   + +lra h+ +       + k  G+d   Gk+ d  ++g+ ep   k ++++ a e++v +lridd++
  MMETSP1174-20130828|35140_1   5 DRSSGQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKkNLIVSTDELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSGEGKN-RYPV-SAIHVLKCHGRSSTESQLVKGFALNCTRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEGNEVFDPANLGECesvseERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSqqdpekaNLKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMI 526
                  79*************************************************************************************************************************945778888889999************************************99997.4444.4689**********************************************************************************************************************************************99877776651112257899999**************************************************************************************************************877678887778899*******************************************97 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.3   9.1  1.9e-107  7.7e-105      12     517 ..       9     531 ..       3     533 .. 0.92

  Alignments for each domain:
  == domain 1    score: 349.3 bits;  conditional E-value: 1.9e-107
    TIGR02341  12 aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgst.n......leaiqiikklggklddsyldegfllekkig.vnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdep......elvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnst........agldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaapr 517
                  +++ r      ++a+ ++vks+lgp g+dk+l+ +    ++++tndgatil+ + ++ paakvlv++++ qd+evgdgttsv+++aaell++a++lv++kihp t+++gyrla++ a + +kk  + ++++     e l++ a+t+++skil  + d fa++av+a+  +k ++ +      + ai+++k  g + ++s l +gf l+ +    + p rienaki + + +l+  k+++ g +v v+    +  + + e +  ke++ kil  + nv++  + i +   + f +ag  a+     e ++rla   gg++v ++ +       + ++lg+c+ + e  +g+ +++ + g+k   a +ivlrga + +lde +r++hdal+v+ +  +   +v+ggg+ e+ ++  +e+ a+ +  ++ la+  fa al  +p  la n   d++el+ klra h+  ++         +gldl +g++ d    g+ve    k + +  a+ea+  +lr+d++ik ap+
  MMETSP1174-20130828|35140_1   9 GQDVRSGNVTATMAIANIVKSSLGPIGLDKMLVDSIG--DVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNLIVSTDE--LGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSgEgknrypVSAIHVLKCHGRSSTESQLVKGFALNCTRAsQQMPTRIENAKIALIDFNLQRHKLQM-GVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMegnevfDPANLGECESVSEERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSQQDpekanlkySGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIKLAPK 531
                  5666777778899*******************98766..99*************************************************************************************99888..56799******************************99964312223444789***********************87651567********************995.9*****************************************************************************986654431111113579*********************************************************999999**************************************************************99876542222233338************************************************98 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1   6.2   5.1e-95   2.1e-92      23     518 ..      16     527 ..       6     538 .. 0.91

  Alignments for each domain:
  == domain 1    score: 308.1 bits;  conditional E-value: 5.1e-95
    TIGR02346  23 nieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPkn...sekfnvdnirvvkllGgslsdsevlkGlvlk..reaegsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsap......speelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah........kkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  n+ a   +++i++ slGP g +k++++ +  + +tnD atil+ lev+hPaak+lv++++ q++e+GDgt  v+++a+elL++a+el++  ++p+ +++Gy la+++a++ +++ +++++ +l   e l++a k+s++sk lg  +d++a++  +ai +v  ++   ++++ v  i v k  G s ++s+++kG+ l+  r ++   +r ++ak+a     l+ ++      v++++++e+    + e    ++ i++i dsg++vi+++  + d+ + y  + + + ++   k +l+rl++++g + +v l+         p +lG ++sv+ e +g+ +++ ++  +++ +   ivLrG+ + +ld+++ra++D + v+k ++  + +++G+ga+e+ L+  l+++a +  + eq+ai +faea  +iP+tla n   +a+e++ kL a h        k + k++g+d+ ++++  +d  ++ + +   +k+ ++++atea vt+L++D +i 
  MMETSP1174-20130828|35140_1  16 NVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNLIVSTDEL-GPEVLMNAAKTSMASKILGPqADFFANMAVEAITSVKTTSgegKNRYPVSAIHVLKCHGRSSTESQLVKGFALNctRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGANVILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMegnevfDPANLGECESVSEERVGDGEMIYLRGCKTQ-RAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHstsqqdpeKANLKYSGLDLIRGKV--RDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIK 527
                  899************************************************************************************************************998877777666.567899************9659***********9998754111667************************99863367777789********************************************************************99988888888888889************99888886541111226889*****************999999985.56679************************************************************************************************999888866677889999988876..8********************************9884 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.7   8.0   6.4e-91   2.6e-88      18     524 ..      13     527 ..       4     531 .. 0.94

  Alignments for each domain:
  == domain 1    score: 294.7 bits;  conditional E-value: 6.4e-91
    TIGR02347  18 lkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee....idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedlt......peslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear........evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlr 524
                   + n++a+ ++++++k+ lGP G  kmlv++ Gd+ +t dG ++l+ l++ hP+a+++   a  qd+ +GdGtts+vi++ ellk+a++l+++ +hP  ++ G+ +a +ea+++++k  i  ++e+  e+l+++a+ts+  k+    ad ++++ v+a+ ++k+ + e      +  + +l+ + +++++ +l++G+ l+      +m+++++n+ i  ++  l+  k ++  ++v ++++e e + + e   +++r++ki++          +   v++  kGid + +  + ++g +a+rr+k+ +l rl  acGG+ + s+ d++      p  lG +  v e+ +g+ +  ++  +k  ++v i+++g+nd+ l+ +  a++d l  +k ++e ++vvaG ga+e+al+ +l++ + ++  +++l++  faeallviPk+l+ n+  d++e + kl++ ++ ++        ++ g+dl  g+  ++  +g+ +    k ++l+ at  +  +l +d++++
  MMETSP1174-20130828|35140_1  13 RSGNVTATMAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHPAAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKNLIVSTDELGPEVLMNAAKTSMASKILGPQADFFANMAVEAITSVKTTSGEgknrYPVSAIHVLKCHGRSSTESQLVKGFALNCTRASQQMPTRIENAKIALIDFNLQRHKLQMGVQVVVNDSKEIEGIRQREMDITKERIRKILDSGA-------N---VILTTKGIDDMCMKYFVEAGAIAVRRVKKEDLKRLARACGGQVVVSLADMEgnevfdPANLGECESVSEERVGDGEMIYLRGCKTQRAVSIVLRGANDFMLDEMDRAMHDALCVIKRVLESNSVVAGGGAVEVALSIYLEDFASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFHSTSQqdpekanlKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTILRIDDMIK 527
                  56699****************************************************************************************************************99999****************************************987544311244556677788899***************999*********************************************************98543.......3...77888******************************************99863333336789**************************************************************************************************************************988877766778888899*******************************************9987 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   2.1   9.7e-14     4e-11      19     132 ..      21     130 ..       8     175 .. 0.91
   2 ?   -0.8   0.0      0.22        88     105     134 ..     274     303 ..     232     347 .. 0.67
   3 !   13.1   0.1   1.3e-05    0.0052     374     514 ..     368     520 ..     352     532 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 9.7e-14
    TIGR02348  19 dkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkkl 132
                   ++a+ vk  lGP g + +l  s G  +it+dG t+ + +e+e++     ak++ e a+  +   GdGtt  +++a  ++k     v     p ++  G   a++++v+ +kk+
  MMETSP1174-20130828|35140_1  21 MAIANIVKSSLGPIGLDKMLVDSIGDVTITNDGATILQMLEVEHP----AAKVLVELANLQDKEVGDGTTSVVIIAAELLKRANELVKNKIHPTTVMSGYRLAMREAVKYIKKN 130
                  579************************************998877....68999999*****************************************************9986 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.22
    TIGR02348 105 vaaGanpielkrGiekavekvveelkklsk 134
                  + +Gan i   +Gi+  + k   e    + 
  MMETSP1174-20130828|35140_1 274 LDSGANVILTTKGIDDMCMKYFVEAGAIAV 303
                  346666666666666554443333333333 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 1.3e-05
    TIGR02348 374 vavikvGaatetelkekkarvedalnatraave.eGivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...........kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiaglll 514
                  v+++  Ga  +  l e    + dal   +  +e + +vaGGG+  + ++  le+ +++  + e++ +    +al    +++a n+ +d++ ++ k+++            + +  G +  +++ +d ++aG+++pa     +l+ a+  +  +l
  MMETSP1174-20130828|35140_1 368 VSIVLRGA-NDFMLDEMDRAMHDALCVIKRVLEsNSVVAGGGAVEVALSIYLEDfASTIGSREQLAIAEFAEALLVIPKTLAVNGAQDATELIGKLRAFhstsqqdpekaNLKYSGLDLIRGKVRDNLDAGVVEPAISKIKSLRFATEASVTIL 520
                  55555554.4667888888899*****99999845799****************555556699999999999999999**************999976422222222111123368899999999*********98666666655544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 1347.28
//
Query:       MMETSP1174-20130828|35223_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|35229_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.2   0.5     0.0017   15.1   0.4    1.0  1  TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family


Domain annotation for each model (and alignments):
>> TIGR02212  lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.4   4.2e-07    0.0017       6      40 ..      25      59 ..      20      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.2e-07
    TIGR02212  6 ialrYlrakkrnkfvslisllsiiGialgvaaLiv 40
                   +rY+ + ++nk  s++s+++++ ia+ vaaL v
  MMETSP1174-20130828|35229_1 25 FTTRYWASPRNNKSSSVVSIVAVSVIAVVVAALFV 59
                 578*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 310.81
//
Query:       MMETSP1174-20130828|35231_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081   11.0   1.4       0.09   10.9   1.0    1.2  1  TIGR03629 arch_S13P: archaeal ribosomal protein S13P


Domain annotation for each model (and alignments):
>> TIGR03629  arch_S13P: archaeal ribosomal protein S13P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   2.2e-05      0.09     104     127 ..      14      37 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.2e-05
    TIGR03629 104 nrlkkirsyrGiRhelGlkvRGqR 127
                  +rl++ rs  GiRh+ Gl +R  R
  MMETSP1174-20130828|35231_1  14 RRLRRNRSQEGIRHQVGLLCRLHR 37 
                  58999*************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|35254_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.5   0.0      0.032   11.2   0.0    1.2  1  TIGR00507 aroE: shikimate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-06     0.032      44      90 ..      21      67 ..       3      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.8e-06
    TIGR00507 44 kalsgikalglkGvnvTvPfKeevlellDeieesakligavNTlkle 90
                 + l+++ + g++ v++T+P  e+v ++ De +++ ++  +vN ++  
  MMETSP1174-20130828|35254_1 21 NPLQAAHTHGAENVDITIPEDESVRSFPDEETRTDNARASVNPIRAS 67
                 5678999***********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 533.24
//
Query:       MMETSP1174-20130828|35264_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.8   0.1      0.013   12.6   0.1    1.0  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.1e-06     0.013     109     150 ..       7      48 ..       2      51 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-06
    TIGR01976 109 vivtrldheaNispWlqaaedagakvkwaevdeadgeleead 150
                   i+tr +h   ++ W ++ +++  ++k  ev+ +++ele ++
  MMETSP1174-20130828|35264_1   7 FILTRTEHAQDMKIWARELKRTESELKECEVELEECELELDQ 48 
                  69************************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|35270_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 885.60
//
Query:       MMETSP1174-20130828|35282_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   12.4   7.5     0.0045   12.5   5.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.018   11.9   6.6      0.018   11.8   4.6    1.1  1  TIGR00414 serS: serine--tRNA ligase
       0.62    6.9   8.1       0.72    6.7   5.6    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   5.2   3.3e-06    0.0045     384     456 ..      13      89 ..       1     100 [] 0.45

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.3e-06
    TIGR02169 384 lreelkelkekleklkeelnelkreldrlleel....krleeelaelkaelerieekiaeleeeleelaeeikkaeq 456
                  + +    l+ek+++l+++++e+ ++l++  ee+    krl+ee++ ++ el+++ +k +++e++ +    +++ + +
  MMETSP1174-20130828|35282_1  13 TSQDCVVLQEKISSLNQKQEESLQTLKKVEEESqiesKRLNEEVNSIQSELASATKKYNDVESRNKVETTRLNGELE 89 
                  45555555555555555555555555555443211113444455555555555555555555554444444433333 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.6   1.3e-05     0.018      36     100 ..      14      78 ..       4      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
    TIGR00414  36 ddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeele 100
                  ++  + l++ki++l++k++e  ++++k ++e++ ++++l++e+++ ++el+++ ++++++e++ +
  MMETSP1174-20130828|35282_1  14 SQDCVVLQEKISSLNQKQEESLQTLKKVEEESQIESKRLNEEVNSIQSELASATKKYNDVESRNK 78 
                  55567788999999999999999998877666665667999999999999999999988876544 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.6   0.00052      0.72       5      77 ..      21      92 ..      19      99 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00052
    TIGR01554  5 reklaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeee 77
                 +ek+++l+++ ++  ++ k+ e+e +  e + l++e++ +++e++++ ++ ++ e++++ + +  ++e e+++
  MMETSP1174-20130828|35282_1 21 QEKISSLNQKQEESLQTLKKVEEESQ-IESKRLNEEVNSIQSELASATKKYNDVESRNKVETTRLNGELEASK 92
                 45555555555544444444444443.334449*************999966666666555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       590  (0.143832); expected 82.0 (0.02)
Passed bias filter:                      302  (0.0736226); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|35330_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 598.35
//
Query:       MMETSP1174-20130828|35360_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1174-20130828|35423_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-20   70.3   0.0    2.7e-20   69.5   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.2e-18   65.0   0.0    1.8e-16   57.8   0.0    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      4e-18   63.0   0.0    3.4e-17   59.9   0.0    2.0  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.3e-11   41.4   0.0    9.2e-07   25.3   0.0    2.3  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      1e-09   35.0   0.0    1.8e-09   34.2   0.0    1.4  1  TIGR00631 uvrb: excinuclease ABC subunit B
    2.3e-06   24.4   0.0    5.7e-06   23.1   0.0    1.6  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    7.1e-06   21.6   0.0    2.1e-05   20.1   0.0    1.6  2  TIGR01054 rgy: reverse gyrase
    0.00038   16.7   0.0    0.00053   16.2   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00042   16.8   0.1     0.0014   15.1   0.0    1.7  2  TIGR00595 priA: primosomal protein N'
     0.0029   14.5   0.0      0.015   12.2   0.0    1.9  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   6.6e-23   2.7e-20      28     346 ..     218     531 ..     199     542 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 6.6e-23
    TIGR04121  28 gesglliapTGaGKTlavflpsliela.............akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATv.gnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                  g + + ia TG+GKTla +lp+l +l+              +++p+ ++++l ++P + La++i++  ++ +      +r+    G ++  ++ r  ++  d+L+ Tp  l  ++ + +   ++++++ +v+DE   +l      +++  + r    +++ +++  sAT   n+ ++a+  l +    ++  v +  +++   +++l         +G   ++++ ++l+++  +  t+vF+Nt+  a+ l   L  +    + + a  Hg  d+ +Re    ++kag++ +++ T  L  G+D  +v  vi+  +pk +     RiGR++ +
  MMETSP1174-20130828|35423_1 218 GWDVVSIAQTGSGKTLAFMLPILYRLLasgpaqrqggggrGRDRPRVAIRALALAPTRELAQQIHEESKKFAFRC--GLRICCAYGGSPFGDQMRELERGCDVLVATPGRLDDMIGRGR--VTLSQCTFLVLDEADRMLDMGFEPQIRNIVERADMPQEGRQTMMFSATFpRNVTRIADSFLYRPVMLRVGRVGG--AASSVTQKVLYV-------NGSDKTRTVVDLLTKV--NGKTIVFVNTKRSADQLEYDLCGM----NCPCASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRIGRTGRA 531
                  5566779*******************99***9999999887888999*******************999987655..56777788******************************9865..679*********************************************95689999999998888555666655..333333444444.......6766666666666665..4689**********9776666655....5679999******************************************************9999886643 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0047       1.9      14      49 ..     206     241 ..     196     244 .. 0.89
   2 !   57.8   0.0   4.4e-19   1.8e-16     216     351 ..     429     562 ..     400     568 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0047
    TIGR00614  14 pvqlevinavlegrdalvvmatGgGksLCyqlpavv 49 
                  pvq + +  ++ g d++ +  tG Gk L + lp ++
  MMETSP1174-20130828|35423_1 206 PVQGHSVPIAIGGWDVVSIAQTGSGKTLAFMLPILY 241
                  788899999999********************9886 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 4.4e-19
    TIGR00614 216 llkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkr 351
                  ++ +++ + +gk+ i++ +++++++q+  +L   +  +a+ h + ++++r+    +f +  i+v++ t   G Gi+ p+v +vi y++pk+ie Y   +GR GR g +  ++ + +  D ++ r+l  + k  k++
  MMETSP1174-20130828|35423_1 429 VVDLLT-KVNGKT-IVFVNTKRSADQLEYDLCGMNCPCASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRIGRTGRAGHEGLATTMINDRDGSIARSLYDMLKTSKQE 562
                  334444.7789*9.*********************************************************************************************************99999999888877665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.073        30      25      52 ..     215     242 ..     197     244 .. 0.83
   2 !   59.9   0.0   8.3e-20   3.4e-17     207     344 ..     421     557 ..     308     565 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.073
    TIGR01389  25 vldgrdvlavlPtGGGkslCYqvPaLll 52 
                   + g dv+++  tG Gk l + +P L++
  MMETSP1174-20130828|35423_1 215 AIGGWDVVSIAQTGSGKTLAFMLPILYR 242
                  5678899*****************9986 PP

  == domain 2    score: 59.9 bits;  conditional E-value: 8.3e-20
    TIGR01389 207 kkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieese 344
                  + ++k++ +++ l+k ++   i++ ++++  ++l+  L+  + + +  h+  ++++R+ a+ +F   +  v++ t   G Gid ++v +vi +d Pk++e y    GR GR G++  a ++ + +D ++++ l +  +
  MMETSP1174-20130828|35423_1 421 NGSDKTRTVVDLLTKVNG-KTIVFVNTKRSADQLEYDLCGMNCPCASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRIGRTGRAGHEGLATTMINDRDGSIARSLYDMLK 557
                  344555566666665555.56*********************************************************************************************************999988765544 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.2e-09   9.2e-07      25     143 ..     192     329 ..     170     366 .. 0.73
   2 !   13.7   0.0     7e-06    0.0029     258     385 ..     423     543 ..     384     549 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.2e-09
    TIGR03817  25 vvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed..........p.......ratalylaPtkalaadqlravkelee.rdvraatydGdtpa.eerewirekaryvltnPdmlhlg 143
                  ++++l+ aG + p   q +   +a  G +vv  + t sGk+la++lP+l +l ++          +         +al laPt+ la+      k++    ++r ++  G +p  ++ + +   ++++++ P  l   
  MMETSP1174-20130828|35423_1 192 ITRNLTFAGFTIPTPVQGHSVPIAIGGWDVVSIAQTGSGKTLAFMLPILYRLLASgpaqrqggggRgrdrprvAIRALALAPTRELAQQIHEESKKFAFrCGLRICCAYGGSPFgDQMRELERGCDVLVATPGRLDDM 329
                  667788899999999999999******************************99997666666555055555556789**********988877777765357777776666664122233333344555556555554 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 7e-06
    TIGR03817 258 aeaadlladlvae.gvrtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrreleral...kdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvard 385
                  ++ ++ + dl+++ + +t++fv+++r+a           ++ + +l    +   + +   d+re e al   k+G++  +  t+ l  G+d+  +  v+    P  +  +  ++Gr+Gr+g++ l++ + +d
  MMETSP1174-20130828|35423_1 423 SDKTRTVVDLLTKvNGKTIVFVNTKRSA-----------DQLEYDLCGMNCPCASVHGDKDQRERECALgefKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRIGRTGRAGHEGLATTMIND 543
                  3444444444332134555555555555...........44444555444444444455666666665533389***************************************************9988765 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.4e-12   1.8e-09     440     539 ..     434     531 ..     411     561 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 4.4e-12
    TIGR00631 440 vaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGra 539
                  ++ n +++v + tk+ a++l   l  ++   + +h + d  er   + ++++g++dvl+G ++L  G+D+Pev  v   Da k+  + + +  i   Gra
  MMETSP1174-20130828|35423_1 434 TKVNGKTIVFVNTKRSADQLEYDLCGMNCPCASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKD--IEDYTHRIGRTGRA 531
                  566899**************999******************************************************9**9886..44445455555555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         1   4.3e+02     287     308 ..     268     289 ..     266     310 .. 0.80
   2 !   23.1   0.0   1.4e-08   5.7e-06     484     564 ..     463     542 ..     443     560 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1
    TIGR00643 287 valmaPTeiLAeQhyeklrell 308
                  ++ +aPT  LA+Q  e+ +++ 
  MMETSP1174-20130828|35423_1 268 ALALAPTRELAQQIHEESKKFA 289
                  5669*********999887765 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.4e-08
    TIGR00643 484 nvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvae 564
                   +a +hg   + e+e +l eF+++++d+L+ T v+  G+dvP++  ++ +da +      H + GR gR  +++ +  + +
  MMETSP1174-20130828|35423_1 463 PCASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRI-GRTGRAGHEGLATTMIN 542
                  57789**************************************99999888887544555655.88888888777666664 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.16        64     124     159 ..     266     300 ..     263     355 .. 0.66
   2 !   20.1   0.0   5.1e-08   2.1e-05     310     411 ..     418     516 ..     368     531 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.16
    TIGR01054 124 krvyiilPttlLvkqvaeklsslaekeglnirvvay 159
                   r++++ Pt+ L++q+ e  +++a + gl i +  y
  MMETSP1174-20130828|35423_1 266 IRALALAPTRELAQQIHEESKKFAFRCGLRICCA-Y 300
                  589999**************99999888777444.3 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 5.1e-08
    TIGR01054 310 vyeeekdvkekllelvkklGkGglvfvsidyGkekaeeieeelkekgvkakliha.kdked....ldkfeeGeidvliGvasyygvlvRGlDlPervryavFlgvPk 411
                   y++ +d + ++++l+ k+   ++vfv+++     a+++e  l  ++    ++h  kd+++    l +f+ G+idvliG+    +vl RG+D+Pe++ + + +++Pk
  MMETSP1174-20130828|35423_1 418 LYVNGSDKTRTVVDLLTKVNGKTIVFVNTK---RSADQLEYDLCGMNCPCASVHGdKDQRErecaLGEFKAGRIDVLIGT----DVLGRGIDVPEVM-HVINYDAPK 516
                  4666677678999999999999******98...88999***********9999987776652233679***********6....89********976.578888887 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-06   0.00053     688     766 ..     465     542 ..     447     558 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-06
    TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvp 766
                  a +Hg  +++e e  + eF+ +++dvL+ T ++  Gid+p++  +i  +A k  + +     GR GR  +++ a  +++
  MMETSP1174-20130828|35423_1 465 ASVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPK-DIEDYTHRIGRTGRAGHEGLATTMIN 542
                  5579**************************************9999999987.46665555688888888887765555 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   1.8e+02     199     229 ..     435     465 ..     423     468 .. 0.81
   2 !   15.1   0.0   3.3e-06    0.0014     300     344 ..     472     514 ..     443     527 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.43
    TIGR00595 199 ekgeqallFlnrRgyaklllCrsCgyvlkCp 229
                  + + ++++F+n++  a +l+   Cg    C+
  MMETSP1174-20130828|35423_1 435 KVNGKTIVFVNTKRSADQLEYDLCGMNCPCA 465
                  567789******************9887775 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.3e-06
    TIGR00595 300 rkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDs 344
                   +++ e  l +f+ag id+liGt ++ +G+d p+v    v++ D 
  MMETSP1174-20130828|35423_1 472 DQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMH--VINYDA 514
                  3445577899***********************9965..555555 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.27   1.1e+02      55      80 ..     266     291 ..     218     309 .. 0.62
   2 !   12.2   0.0   3.6e-05     0.015     318     382 ..     466     530 ..     445     544 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.27
    TIGR04095  55 lvvvvvvPykhLveqWakeaekFgle 80 
                  +  + ++P ++L++q  +e +kF ++
  MMETSP1174-20130828|35423_1 266 IRALALAPTRELAQQIHEESKKFAFR 291
                  44567889999999999999999764 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.6e-05
    TIGR04095 318 tftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLR 382
                  +    ++++eRe  l +f++g++++l+    L  G+DvP++ + +   + ++  ++  R GR  R
  MMETSP1174-20130828|35423_1 466 SVHGDKDQRERECALGEFKAGRIDVLIGTDVLGRGIDVPEVMHVINYDAPKDIEDYTHRIGRTGR 530
                  5555678899999***************************9998877777777788888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.17s 00:00:00.80 Elapsed: 00:00:00.53
# Mc/sec: 1461.84
//
Query:       MMETSP1174-20130828|35490_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    7.6   6.7       0.53    7.2   4.6    1.3  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
        3.5    4.6  67.1        3.9    4.4  46.5    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.6   0.00026      0.53     151     222 ..       5      78 ..       3      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00026
    TIGR01249 151 dewerfvdsipeaern.eqlveayhkrlq.sedeevklaaakaWadWestallrlekeevskaedaklslalar 222
                  +e +r +++ ++a+ + +q + a+  +l+ + +ee +l aa+a a+ e  + l   + + +++e+++l  a a+
  MMETSP1174-20130828|35490_1   5 EEKQRLMAAQAKAKAEeKQRLMAFAAQLKaKAEEEQRLMAAQAKAKAEEKQRLMAAQAKAKAEEEQRLMAAQAK 78 
                  56788888887776654455566666666156778899999999999997777777777777777777666654 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  46.5    0.0019       3.9     121     226 ..       4     100 ..       1     101 [] 0.50

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0019
    TIGR02794 121 keekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeae.....AkaKAeaeAkaKa 226
                  +eek++   +a+ak++aE k++  a        ++++++kaEee+    aa+ak+kaE e  k++ +a  + Kakae e++  a +akaKae+e     A+aKA+ae  +K+
  MMETSP1174-20130828|35490_1   4 AEEKQRLM-AAQAKAKAEEKQRLMAF-------AAQLKAKAEEEQ-RLMAAQAKAKAE-E--KQRLMAA-QaKAKAEEEQRLMAAQAKAKAEEEqrlrvAQAKAKAE--EKQ 100
                  12222222.11122223333333332.......234677777777.455577777777.3..3333333.3377777777776667777777777787777777766..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       800  (0.195027); expected 82.0 (0.02)
Passed bias filter:                      256  (0.0624086); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 392.09
//
Query:       MMETSP1174-20130828|35502_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 564.91
//
Query:       MMETSP1174-20130828|35515_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-15   52.7   0.0    1.4e-14   52.0   0.0    1.3  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain
      0.004   15.1   0.3      0.038   11.9   0.0    2.3  2  TIGR00810 secG: preprotein translocase, SecG subunit


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   6.8e-18   1.4e-14       9      72 ..     188     317 ..     186     319 .. 0.95

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 6.8e-18
    TIGR02174   9 cgYkrraeelkqaleeefpdl..eiegenlkpd................................................................stGaFEitlngklvwsklekggfPeeeelveli 72 
                   +Y++ + el+++l +++p+l  +i gen++p+                                                                stGaFE++l+g+l++skle+g+ P+   ++ l+
  MMETSP1174-20130828|35515_1 188 LRYEEDFVELQNFLSTRYPELagRIRGENYPPPayaqmvvsavgslqmgaivmllfgskifemlkmpepelfgqmkenkmmtfmgifmansmansltSTGAFEVFLDGNLIFSKLESGQMPNGRLMMDLL 317
                  58******************8557*************************************************************************************************987777666 PP

>> TIGR00810  secG: preprotein translocase, SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.9e-05     0.038      29      63 ..      18      54 ..      12      59 .. 0.76
   2 ?    0.4   0.0     0.074   1.5e+02      55      71 ..     267     283 ..     258     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-05
    TIGR00810 29 lggafgggasqslfg..srgaekfLsrlTavlavlFf 63
                  g a++g ++ ++     r++++fL  + +++a++Ff
  MMETSP1174-20130828|35515_1 18 KGKAGSGLSQRTMAEasPRSSSNFLYLAVVWIAIIFF 54
                 455555555566666755******************9 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.074
    TIGR00810  55 TavlavlFfilslalal 71 
                  +++++++F+++s+a +l
  MMETSP1174-20130828|35515_1 267 MMTFMGIFMANSMANSL 283
                  66788899999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1059.13
//
Query:       MMETSP1174-20130828|35522_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1174-20130828|35553_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 170.62
//
Query:       MMETSP1174-20130828|35572_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.35
# Mc/sec: 199.87
//
Query:       MMETSP1174-20130828|35622_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 482.89
//
Query:       MMETSP1174-20130828|35694_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 230.98
//
Query:       MMETSP1174-20130828|35695_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|35687_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-263  874.4  37.5     2e-263  874.0  26.0    1.0  1  TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase


Domain annotation for each model (and alignments):
>> TIGR01104  V_PPase: V-type H(+)-translocating pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  874.0  26.0  4.9e-267    2e-263       4     692 ..      23     747 ..      20     751 .. 0.94

  Alignments for each domain:
  == domain 1    score: 874.0 bits;  conditional E-value: 4.9e-267
    TIGR01104   4 ellivvlaviglayallqavlvlkvdvgt...................ekmaeiskaiseGataflfreyktvavllvvlavlilvllgs..vegfsdlsavafllGavtsllaGylGmkiatranarvtlea.....rkglgkalivafrsGavmGlllaalgllvlaililvfksylg.ddwegliealvglglGassialfarvgGGiytkaadvgadlvGkveagiPeddPrnPaviadnvGdnvGdvaGmgadlfesyvesvvaalvlasisslglnadltallyplvlssvgilvsllttlfvk....ikavkeiekalkkqlllstvlmlvgvavisavalptsftslnfatqkevks.fqlflcvvvGlvaglligfvteyytstaysPvrdvadsskt.gaatnviaGlavglksviipiliiaaaiivsyelaglyGiaiaavgllstigivlaidayGPisdnaGGiaema..glseevrertdaldavGnttaaigkGfaigsaalvalalfaafveeaaikk.vdvlspkvliGllvGallpylfssltlkavGraalklveevrrqfrtiPgllegtakpdyarcvdistkasikemiiPgllavltPlvvglllgvealsgllaGalvsGvqiaisasntGGaWdnakkyieagseharslglkgseahkaaviGdtvGdPlkdtsGPslnilikllavvslvlapvlat 692
                  +++iv+++++gla+a++q +++ k +v +                   + +  i +ai+eGa+afl++eyk+  ++++v+ ++i+ l+    +   + l++vaf+ Ga ts+++GylGmk+a+++nar+t +a     ++    a+ +afr+G vmG++l++lgllvl ili v++++++  +++ +++ + g+glG+ssia+f+rvgGGiytkaadvgadlvGkv+ +iPeddPrnPa+iadnvGdnvGdvaGm++dlf+s++es++aalv+a+ s+   ++  +all+pl +s+ gi++++l+ + ++    +k++ ++e++lk ql+++t l++  +av+++  lp +ft   +a+   + +   +f+cv++G++ gl+ig+vteyyts +y+Pvr+va++++  gaatn+i Gla+g+ks+i+p+ ++a+ i+++++la  yG+a +a+g+lst++++l+id yGP+ dnaGGiaem+  +l + vr+ tdalda+GnttaaigkGfaigsaalv+lal++afv ++ i++ v+vl+p  ++ ll+Ga+lpy+fs++t+k+vG aa ++veevrrqfr+ Pg++ g+ kpdy++cvdistkas++em+ P++l++l+Pl+ g ++gv a+ gll G lvsGvq+a+s+sntGGaWdnakk+ie +   +  l+ kg+e+hkaav+GdtvGdPlkdtsGP+lnil+kl+a++slv+a +++ 
  MMETSP1174-20130828|35687_1  23 DYFIVLCSLLGLAFAMWQYSILAKIKVPPtvaenekdgivsvmseeqgKSLVLIFDAITEGANAFLYAEYKICFIFIAVFGLVIFCLIAWgsSVQDGILTTVAFVTGAFTSMISGYLGMKVAVYSNARTTIAAcvkddEQKYKGAFSTAFRAGGVMGFALCGLGLLVLWILIKVYSTMFAeSEYDVMFDCISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVDNNIPEDDPRNPATIADNVGDNVGDVAGMSSDLFGSFAESTCAALVIAASSADMRTSGWAALLFPLSISAAGIIICMLSSFVATdicpVKKQADVENSLKGQLIITTLLVVPTTAVLAYALLPEEFTLTGVAQSSFTATpGYIFACVSMGAIGGLIIGLVTEYYTSFSYAPVREVAEACNKgGAATNIIYGLALGYKSAIVPVTVLALIIMIAFKLADTYGVACSAIGMLSTLATGLTIDGYGPVCDNAGGIAEMTlpELDDSVRDCTDALDAAGNTTAAIGKGFAIGSAALVSLALYGAFVVRLGITTgVNVLEPLTFAFLLIGAMLPYWFSAMTMKSVGEAAGEMVEEVRRQFRENPGIMTGEVKPDYTKCVDISTKASLREMVAPSALVMLAPLLAGSFFGVYAVFGLLTGGLVSGVQLAVSMSNTGGAWDNAKKFIEGKHSDNPALQGKGTEVHKAAVVGDTVGDPLKDTSGPALNILMKLMAILSLVFAEYFNA 747
                  689************************999***************99888999***************************999998875511555556********************************998443333457779******************************987761578899****************************************************************************************66666667788********************99999999***********************9***************9555554443331359************************************762799**********************************************************************7669***********************************************98659***********************************************************************************************************************************988888999*******************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.19s 00:00:00.73 Elapsed: 00:00:00.51
# Mc/sec: 1969.48
//
Query:       MMETSP1174-20130828|35692_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-132  439.1   0.1   5.2e-132  438.9   0.1    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    4.8e-50  168.7   0.0    6.6e-50  168.3   0.0    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    7.3e-48  161.5  12.8    1.1e-47  160.9   8.8    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    1.4e-44  150.5   6.8    1.7e-44  150.2   4.3    1.4  2  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
     0.0086   12.4   0.0      0.014   11.7   0.0    1.2  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
  ------ inclusion threshold ------
      0.019   13.3   0.6      0.019   13.3   0.4    2.8  3  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
      0.077   10.0   4.2       0.11    9.5   2.9    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.9   0.1  8.8e-135  5.2e-132       2     437 .]      80     505 .]      79     505 .] 0.94

  Alignments for each domain:
  == domain 1    score: 438.9 bits;  conditional E-value: 8.8e-135
    TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpkkkesaqeaaaaktpatkkaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaeervklsvnDlivkAvalAlrevPevnsswtddvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknke..ekglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                  i +PaLsPtme+G++a wk  eG   ++Gdv++e+etDkA++d+e q+eg++ak lv++g++ ++v+++i ++v++++dv+ a+k+y++e++as p+p+           + a+++a++  a+++++ ++++ ++s++r+fasPlA+klAke+g+d+s v+G+GP+gR++ +Di  f+p ++++   a a+++  +++aa+    + + d p+s+  + ia+RL++skq +Phyylsve+++d++l++r+elna++ +   ls+nDl+vkA alA+++vP+vn+sw  +++r y+  D++v   + +Gl+ P+++++   gl+++s  ++  ++ A +++L+pe+   Gtf++ nlGm+g+k+ + i+  Pqaa+l++ga  +k+v ++++  e+ +++a++l+ t s+DHRv+DGavgAe+l+++kkl+enPi++ll
  MMETSP1174-20130828|35692_1  80 IGLPALSPTMEVGTIASWKFAEGASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSE-INVGSPIMIVVSDPADVA-AFKDYTPEAEASTPDPTPAPT-------P-APTPAPTSPAAAPPAAVPVAAASSGERVFASPLARKLAKEAGYDISGVSGTGPQGRVIAADIVGFTPAAVAVET-AVAEAGVVAAPAASAIAGDGFVDYPVSEEAREIAARLTKSKQQVPHYYLSVEIELDAILAMRSELNATL-GDDSLSLNDLLVKAAALAMKSVPDVNASWLGTTVRMYDRCDVNVVAGVGDGLVAPVLKDVGSMGLKDLSDGIRAKVEGAEDGSLRPEDCAIGTFSVVNLGMYGVKSASLIVTEPQAAVLGLGAAVEKVVPNEDPdaEQIYRMATMLTATCSFDHRVVDGAVGAEWLAAYKKLVENPITMLL 505
                  89**********************************************************99.******************.**********99888864333.......3.45667777788888899999999999*****************************************7766555.6677778888899999999**************************************************.7788***************************************************************************************************************************9987765116789***************************************97 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   1.1e-52   6.6e-50       3     402 ..      80     505 .]      78     505 .] 0.84

  Alignments for each domain:
  == domain 1    score: 168.3 bits;  conditional E-value: 1.1e-52
    TIGR01347   3 ikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaelee.................ssaaaeaasekskeekeekaaakaek.......akeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekk...asaakeaaakaakaaenaatrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaeidgddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaikeRPvavn....gkieir.PmmYlaLsYDhRliDGkeavtFLvkikelledperlll 402
                  i  P+l+  +  +t+a+w+ + G + + +++++e+etDk +++ + + +Gv+++ l++ g+ + +g  + ++                   s  +++ +++++  ++ +++++ a++       a++++ ++  +sp arklake+g d + v++t+++grv  +div  + +    ++a +ea   aa+aa++ a       +++   ++ia rL ++k+++       e+++ a+ ++R + + ++  +    l    + vka++ a+k++P+vna+  g+ + +++  D+ v  +  +GLv Pv++d+ +++l d+   i    + a +g l  ed   GtF + n G++G   +  i+  pq+a+LG+ a  e+ v  +    ++i     m+    s+DhR++DG    ++L   k+l+e+p ++ll
  MMETSP1174-20130828|35692_1  80 IGLPALSPTMEVGTIASWKFAEGASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSEINVGSPIMIVVSdpadvaafkdytpeaeaS--TPDPTPAPTP-APTPAPTSPAAAppaavpvAAASSGERVFASPLARKLAKEAGYDISGVSGTGPQGRVIAADIVGFTPAAvavETAVAEAGVVAAPAASAIAGDGFVDYPVSEEAREIAARLTKSKQQVPHYYLSVEIELDAILAMRSELNATLGDD---SLSLNDLLVKAAALAMKSVPDVNASWLGTTVRMYDRCDVNVVAGVGDGLVAPVLKDVGSMGLKDLSDGIRAKVEGAEDGSLRPEDCAIGTFSVVNLGMYGVKSASLIVTEPQAAVLGLGAAVEKVVPNEdpdaEQIYRMaTMLTATCSFDHRVVDGAVGAEWLAAYKKLVENPITMLL 505
                  567999999999*******************************************************9999887687777776665554321..2222222211.11111111111123334445555556699**********************************9988865334444444444555555557777778899*************************************999988765...588899*******************************************************************************************************************99988765344457765515556668***************************9997 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   8.8   1.9e-50   1.1e-47     129     570 ..      80     499 ..      72     501 .. 0.85

  Alignments for each domain:
  == domain 1    score: 160.9 bits;  conditional E-value: 1.9e-50
    TIGR02927 129 vempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakseekpea.aepkaekkeepkpepkaeekapaakaatektaa..dsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeakeaaaaeaaaaapaapa.aakkapepekaklrGttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrlee 570
                  + +p+l  ++  Gt+++w  a G   ++ + + ev tdk   +      G++ + l++    ++vG+ + ++  + +a+ +  ++ +pe + ++++++p++ ++p ++++          ++a+a++aa   +aa   +  + +pl rklake G d+s v GtG  Gr+   d+   + aa + + a a+    aapaa+a a    ++   +         +  r+i a+ t +s q        +e+++  + a+r+   a + +     l+   ++vka+  a+k  p+vnas+   +  v  +d  ++ +      Gl++pv+k+ g + l +l+  i    + a d+ l+p++ + gtf++ n+G  G  + + i+++pqaa+lG+Ga v + +   d d ++   + ++   + ++dhr+vdGa  + +l + kk +e+
  MMETSP1174-20130828|35692_1  80 IGLPALSPTMEVGTIASWKFAEGASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSEINVGSPIMIVV-SDPADVAAFKDYTPEAEASTPDPTPAPtPAPTPAPT----------SPAAAPPAAVPVAAAssGERVFASPLARKLAKEAGYDISGVSGTGPQGRVIAADIVGFTPAAVAVETAVAEAGVVAAPAASAiAGDGFVDYPVS---------EEAREIAARLT-KSKQQVPHYYLSVEIELDAILAMRSELNATLGDD---SLSLNDLLVKAAALAMKSVPDVNASW--LGTTVRMYDRCDVNVVAGVGDGLVAPVLKDVGSMGLKDLSDGIRAKVEGAEDGSLRPEDCAIGTFSVVNLGMYGVKSASLIVTEPQAAVLGLGAAVEKVVPNEDPDAEQIYRMATMLTATCSFDHRVVDGAVGAEWLAAYKKLVEN 499
                  6789***********************************8888888899******************999987.468888877888887777777776665233333333..........333333333333333115567889*********************************9999999999888888888888887344444555554.........56688877655.6667777778889***********9877766543...5777789*******************..6778999*******************************************************************************************99999999999999***************************9998875 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.2   6.9e+02      57      71 ..      53      67 ..      39      70 .. 0.54
   2 !  150.2   4.3   2.8e-47   1.7e-44     179     586 ..     102     504 ..      81     505 .] 0.80

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.2
    TIGR01348 57 kvkvGdtlkeGavil 71
                 +++ Gd+l+ G  i+
  MMETSP1174-20130828|35692_1 53 NIRTGDKLSAGRFIM 67
                 445555555555554 PP

  == domain 2    score: 150.2 bits;  conditional E-value: 2.8e-47
    TIGR01348 179 GdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaae..apa.kaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeavkraeaaaaaaaggipgllPlPkvdfskfGeveevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGvsksalePvWdgk.....efePrlllPlslsydhrvidGadaarflkylselladirrll 586
                  G   +a+  + ++e+dka+++   +  Gv+ +  v+ G ++++G+ i+++ ++ a  aa +  +p+ +a+++ ++pa +  +++a++++a a ++a   a ++ +++v  a+P+ r+la+e G d+s v gtg++Gr+   d+  f  +av    a a a   ++p +  +    f  +      ++s   +  +a l+++  ++Ph     + ++ ++ a+r ++n  a     +  l +  +l+ka+a a+k +P+ nas      ++ + +  ++ v +   +Gl+ Pv+kdv   g+ +l+  +    + a d+ l++++   ++f++ +lG  G ++ + iv  P+ a+lG+  +  + v +++      ++   +l  + s+dhrv+dGa +a +l    +l++++ ++l
  MMETSP1174-20130828|35692_1 102 GASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSEINVGSPIMIVVSDPADVAAFKdyTPEaEASTPDPTPAPTPAPTPAPTSPAAAPPAAVPVAAASSGERV-FASPLARKLAKEAGYDISGVSGTGPQGRVIAADIVGFTPAAVAVETAVAEAGVVAAPAASAIAGDGFVDY------PVSEEAREIAARLTKSKQQVPHYYLSVEIELDAILAMRSELN--A--TLGDDSLSLNDLLVKAAALAMKSVPDVNASWLG--TTVRMYDRCDVNVVAGVGDGLVAPVLKDVGSMGLKDLSDGIRAKVEGAEDGSLRPEDCAIGTFSVVNLGMYGVKSASLIVTEPQAAVLGLGAAVEKVVPNEDpdaeqIYRMATMLTATCSFDHRVVDGAVGAEWLAAYKKLVENPITML 504
                  55667888999************************************9998776655543211332123334444444444444444444444444445667777888.9***********************************9998885443333222222344444544444444......344444455788**********99999999999999999999..4..45567899999******************9865..555556667788889999************************************************************************99888888776665643466778**********************99999998887776 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.3e-05     0.014     525     579 ..      91     145 ..      75     148 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.3e-05
    TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavg 579
                   G+i   k  eG+  ++G+v+  +e+ k   + +   +G+++++lv +G +++vg
  MMETSP1174-20130828|35692_1  91 VGTIASWKFAEGASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSEINVG 145
                  5999999*********************************************998 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   3.2e-05     0.019     105     154 ..     102     151 ..      98     153 .. 0.94
   2 ?   -0.3   3.2       0.5     3e+02      41      80 ..     170     208 ..     157     216 .. 0.50
   3 ?   -2.1   0.1       1.7     1e+03      56      75 ..     251     270 ..     239     283 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.2e-05
    TIGR00531 105 GdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivi 154
                  G + + gdvvc ve  k + + e + +g + + lv+ g  ++ g p++++
  MMETSP1174-20130828|35692_1 102 GASFDAGDVVCEVETDKAVVDFEMQDEGVIAKFLVDAGSEINVGSPIMIV 151
                  788899****************************************9987 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.5
    TIGR00531  41 ksvlqqaaapvvaqvp.avasaavpaaavaaeaakadkkeh 80 
                   s  +++ ap++a++p  +++aa+p aav  ++a+a   e 
  MMETSP1174-20130828|35692_1 170 ASTPDPTPAPTPAPTPaPTSPAAAPPAAV--PVAAASSGER 208
                  44445555666666663233344333333..3333344444 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.7
    TIGR00531  56 pavasaavpaaavaaeaaka 75 
                  +av++a ++a +vaa+aa+a
  MMETSP1174-20130828|35692_1 251 VAVETAVAEAGVVAAPAASA 270
                  35556666666666666554 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.9   0.00019      0.11      81     135 ..     159     220 ..     106     275 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
    TIGR00601  81 k........akaaePaatp..esaptptpsatpasvaekksaaPasaveeessaeeeatatales 135
                           a+a++P++tp  + aptp+p++++a++++   a P +a++ ++ +  ++ a  l++
  MMETSP1174-20130828|35692_1 159 AafkdytpeAEASTPDPTPapTPAPTPAPTSPAAAPPA---AVPVAAASSGERVFASPLARKLAK 220
                  24444444444444444440044444444333333333...334445444444444455444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1709.09
//
Query:       MMETSP1174-20130828|35700_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|35696_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1434.85
//
Query:       MMETSP1174-20130828|35699_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1810.73
//
Query:       MMETSP1174-20130828|35701_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-29   99.6   0.1    2.9e-29   99.2   0.0    1.2  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    2.1e-24   83.7   0.1    2.6e-24   83.3   0.1    1.1  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    9.2e-24   81.5   0.0    1.2e-23   81.2   0.0    1.1  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
      1e-07   29.8   0.0    1.4e-07   29.4   0.0    1.1  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI
     0.0055   15.2   0.0     0.0074   14.7   0.0    1.2  1  TIGR01911 HesB_rel_seleno: HesB-like selenoprotein


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   3.6e-32   2.9e-29       1     106 []      52     161 .]      52     161 .] 0.90

  Alignments for each domain:
  == domain 1    score: 99.2 bits;  conditional E-value: 3.6e-32
    TIGR00049   1 itltdkaakkikelleeekeenkglrvgvkegGCsGlkykleleeekee..dDevve..kdgvkvvvdskslellegleidyveellgsgFkfsNPnakssCgCgkSFsv 106
                  +++ +kaa+++ e+ ++ + ++ ++r+gv++gGCsG++y +++ e+++   +D++ e  + g+k v+d+ks+ +l gl++dy++el+g+gF+fsNPna ++CgCgkSF+v
  MMETSP1174-20130828|35701_1  52 VSVQQKAASHLLEMKKKMDVDTLHIRMGVRSGGCSGMSYVMDVCESEDVspEDHIDEwpDLGIKCVIDPKSMLFLFGLNLDYSDELIGGGFSFSNPNADQTCGCGKSFNV 161
                  57899*************************************987665433887655226799*********************************************85 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.1   3.2e-27   2.6e-24       7     105 .]      58     161 .]      52     161 .] 0.82

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 3.2e-27
    TIGR02011   7 aakrvnsflanr.gkglglrlgvktsgcsgmayvlefvd..eaddddlv..fedkgvkividakslvyldgiqldfvkeglnegfkfenpnvkdecgcgesfhv 105
                  aa ++ ++  +     l +r+gv++ gcsgm+yv++  +  +++++d +  + d g+k vid+ks+++l g++ld+  e +  gf f+npn+ + cgcg+sf+v
  MMETSP1174-20130828|35701_1  58 AASHLLEMKKKMdVDTLHIRMGVRSGGCSGMSYVMDVCEseDVSPEDHIdeWPDLGIKCVIDPKSMLFLFGLNLDYSDELIGGGFSFSNPNADQTCGCGKSFNV 161
                  555555444443135789******************9862145689999334588***********************************************87 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.4e-26   1.2e-23       2     107 .]      51     161 .]      50     161 .] 0.89

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1.4e-26
    TIGR01997   2 vleltdaaatrvrelvkkr.eeavgirlsvkktGcaGleyalelvsepk..eddvlle..kdGakvfvapeallflkGtevdfvkktlrqglkfnnPnatsacGcGesvel 107
                  ++++ + aa+++ e+ kk   ++  ir++v+ +Gc+G++y++++ +  +   +d + e  + G+k +++p+++lfl G ++d+  + ++ g+ f nPna + cGcG s+++
  MMETSP1174-20130828|35701_1  51 IVSVQQKAASHLLEMKKKMdVDTLHIRMGVRSGGCSGMSYVMDVCESEDvsPEDHIDEwpDLGIKCVIDPKSMLFLFGLNLDYSDELIGGGFSFSNPNADQTCGCGKSFNV 161
                  67888999******999986899********************9976542146666667689**********************************************986 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.7e-10   1.4e-07       2      95 ..      53     149 ..      52     153 .. 0.93

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.7e-10
    TIGR03341   2 titeaaqeylakllekqe.egikirvfvvnPGtpkaecgvayckpdeveeediklefde..fsayvdaksvpfledaeidfvtdklGgqltlkaPna 95 
                  ++ + a ++l ++ +k + + ++ir+ v + G +     +  c+ ++v++ed   e+ +  +++++d ks+ fl   ++d++ + +Gg + +  Pna
  MMETSP1174-20130828|35701_1  53 SVQQKAASHLLEMKKKMDvDTLHIRMGVRSGGCSGMSYVMDVCESEDVSPEDHIDEWPDlgIKCVIDPKSMLFLFGLNLDYSDELIGGGFSFSNPNA 149
                  6889999*********999999*******************************99998622699********************************8 PP

>> TIGR01911  HesB_rel_seleno: HesB-like selenoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-06    0.0074       2      90 ..      50     143 ..      49     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9e-06
    TIGR01911   2 kkvvisDeaykefldfLkkndvdkdvvriyleGfglsGPvFnviiaeen...enDevvkikdl..tfliDkslidqflgfsielaeenfgkglk 90 
                  ++v +  +a   +l++ kk dvd   +r+ +   g+sG  + + + e +   ++D++    dl  + +iD++ +    g+++  ++e  g g++
  MMETSP1174-20130828|35701_1  50 NIVSVQQKAASHLLEMKKKMDVDTLHIRMGVRSGGCSGMSYVMDVCESEdvsPEDHIDEWPDLgiKCVIDPKSMLFLFGLNLDYSDELIGGGFS 143
                  6899999*****************9999999999****999888776542227999998777533889**977776778999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 708.34
//
Query:       MMETSP1174-20130828|35697_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-240  792.6  13.6   7.7e-240  792.4   9.4    1.0  1  TIGR01151 psbA: photosystem q(b) protein
    2.4e-50  169.5  12.9    2.9e-50  169.2   8.9    1.0  1  TIGR01152 psbD: photosystem II D2 protein (photosystem q(a) protein)
    2.2e-14   51.2   5.1    4.9e-14   50.1   3.5    1.5  1  TIGR01115 pufM: photosynthetic reaction center M subunit
      8e-13   46.1   3.8      8e-13   46.1   2.7    1.5  1  TIGR01157 pufL: photosynthetic reaction center L subunit


Domain annotation for each model (and alignments):
>> TIGR01151  psbA: photosystem q(b) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  792.4   9.4  7.5e-243  7.7e-240       1     359 [.       1     359 [.       1     360 [] 1.00

  Alignments for each domain:
  == domain 1    score: 792.4 bits;  conditional E-value: 7.5e-243
    TIGR01151   1 mtatlerresaslwerfcewitstenrlyigwfgvlmiptlltatsvfiiafiaappvdidgirepvagsllygnniisgavvpssnaiglhfypiweaasldewlynggpyqlvvlhfllgvacylgrewelsyrlgmrpwiavaysapvaaatavfliypigqgsfsdgmplgisgtfnfmlvfqaehnillhpfhmlgvagvfggslfsamhgslvtsslirettenesanygykfgqeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgiwftalgvstmafnlngfnfnqsvvdsqgrvintwadiinranlglevmhernahnfpldlaagevapvaleapain 359
                  mtatlerres+slwerfc+witst+nrlyigwfgvlmiptll+at+++iiafiaappvdidgirepvagsl+ygnniisgav+pssnaig+hfyp+weaas+dewlynggpyqlvvlhfl+gv+c++grewelsyrlgmrpwi+va+sapvaaa+avfl+ypigqgsfsdgmplgisgtfnfmlvfqaehnil+hpfhm+gvagvfggslfsamhgslvtsslirette+es+n+gykfgqeeetynivaahgyfgrlifqyasfnnsr+lhfflaawpvvgiw+talgvstmafnlngfnfnqsvvds+grvintwadi+nra+lg+evmhernahnfpldla++e++pval ap+i 
  MMETSP1174-20130828|35697_1   1 MTATLERRESISLWERFCSWITSTDNRLYIGWFGVLMIPTLLSATTCYIIAFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPVWEAASVDEWLYNGGPYQLVVLHFLIGVSCWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTESESSNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGMEVMHERNAHNFPLDLASAESMPVALAAPSIV 359
                  9*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************985 PP

>> TIGR01152  psbD: photosystem II D2 protein (photosystem q(a) protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   8.9   2.8e-53   2.9e-50       4     300 ..       4     304 ..       1     323 [. 0.87

  Alignments for each domain:
  == domain 1    score: 169.2 bits;  conditional E-value: 2.8e-53
    TIGR01152   4 avgkakeerdlfdvlddwlk.rdrfvfvgwsglllfpcaylalggwltgttfvtswythg....lassylegcnfltaavstpanslahsllllwgpeaqgdftrwvqlgglwtfvalhgafaligfmlrqfelarsvqlrpynaiafsgpiavfvsvfliyplgqsgwffapsfgvaaifrfilflqgfhnwtlnpfhmmgvagvlgaallcaihgatventlfedgdga.ntfrafnptqaeetysmvtanrfwsq.ifgva.fsnkrwlhffmlfvpvtglwmsaigvvglalnlraydfvs 300
                  ++++  e+ +l++ +  w+   d  +++gw g+l++p+   a  +++     +      g    +a s + g n+++ av   +n+++  +  +w +     +  w+  gg +++v lh  +++  +m r++el+  +++rp+  +afs+p+a   +vfl+yp+gq ++     +g+++ f f+l++q  hn  ++pfhm gvagv+g++l+ a+hg+ v  +l+ ++ ++ ++ + ++  q eety +v+a  ++ + if  a f n r lhff+   pv+g+w++a+gv  +a+nl  ++f  
  MMETSP1174-20130828|35697_1   4 TLERR-ESISLWERFCSWITsTDNRLYIGWFGVLMIPTLLSATTCYIIAFIAAPPVDIDGirepVAGSLMYGNNIISGAVIPSSNAIGVHFYPVWEAA---SVDEWLYNGGPYQLVVLHFLIGVSCWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTESeSSNNGYKFGQEEETYNIVAAHGYFGRlIFQYAsFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQ 304
                  44444.4667778888898526999*************99999999877665555555552222799**********************999999754...5678*********************************************************************************************************************998766555156789***************99887637876549***********************************9954 PP

>> TIGR01115  pufM: photosynthetic reaction center M subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   3.5   4.8e-17   4.9e-14     109     224 ..     106     220 ..      92     237 .. 0.94

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.8e-17
    TIGR01115 109 lnegGwwliaglfltvsillWwvrvytraralglgkhlawafaaaiflylvlglirPvllGswseavpfGifahldWtaafslryGnlyynPfhmlsiaflyGsallfamhgatil 224
                  l +gG +++  l +++ +  W+ r ++ +  lg+  +++ af a ++   ++ l+ P+  Gs+s+++p Gi   ++++  f  ++ n+   Pfhm  +a ++G +l+ amhg+ + 
  MMETSP1174-20130828|35697_1 106 LYNGGPYQLVVLHFLIGVSCWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEH-NILMHPFHMAGVAGVFGGSLFSAMHGSLVT 220
                  679******************************************************************************9998.88899*********************9775 PP

>> TIGR01157  pufL: photosynthetic reaction center L subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   2.7   7.8e-16     8e-13      46     169 ..     105     227 ..      75     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 7.8e-16
    TIGR01157  46 plakgglwqliticalgafvswalreveiarklgigyhvplafslailayltlvvirpvlmgawgyafpygifthldwvsntgyqygnfhynpahmlaislffttalalalhgalvlsaanpek 169
                   l +gg +ql+ +  l+  + w  re e++ +lg+   + +afs  + a  ++ ++ p+  g+++ ++p gi   ++++        n+   p+hm +++  f  +l  a+hg+lv s+   e 
  MMETSP1174-20130828|35697_1 105 WLYNGGPYQLVVLHFLIGVSCWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQA-EHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET 227
                  4789************************************************************************99876554.4578899************************99865544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1284.22
//
Query:       MMETSP1174-20130828|35703_1  [L=1067]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-182  605.2   5.6   3.1e-182  604.6   3.9    1.3  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
    7.8e-47  157.8   3.8    2.9e-45  152.6   2.6    2.5  1  TIGR00518 alaDH: alanine dehydrogenase
      0.002   14.4   0.2     0.0029   13.9   0.2    1.1  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  604.6   3.9  2.3e-185  3.1e-182       2     510 ..      53     569 ..      52     570 .. 0.94

  Alignments for each domain:
  == domain 1    score: 604.6 bits;  conditional E-value: 2.3e-185
    TIGR00561   2 igvpreslenesrvaatpktvqkllklgfdvlvesgagakasfedkafveagaeivegaeveqsdiilkvnapsdeeiaelkegkalvsfiwpaqnpellkklaaknitvlamdavpr.israqkldalssmaniagyraiieaahefgrfftgqitaagkvppakvlvigagvaglaaigaakslgaivrafdtrpevkeqvqslgaefleldfkeeggsgdgyakvmseefikaemelfaaqakevdiiittalipgkpapklitkemvdsmkagsvivdlaaeqggnceytkagevvttenqvkvigytdlpsrlatqssqlygtnlvnllkllc...kekdgnikvdvedvvirgvlvvregeitippakiqvsaqvkaakkaapvvekeeksakspsvkya....llalaaillvwlasvap.keflshftvfvlacvvgyyvvwnvshalhtplmsvtnaisgiiivgallqisqpln..lfvsilafiailvasinifggflvtqrmlkmfrk 510
                  igvp+e+++ e rva tp++v+kl   gf+v vesgag+ + f d +++e gaei++ a v++sd+++k++aps++e + l e ++l s++wpaqnpell++l a++ tv+amd +pr +sr q++dalss aniagyr +ieaa+efgrff+gq+taagkvppakvlvig gvaglaa+ +ak lgaivr fd r    eq++s+g++fl+++f e+g++ +gyak ms e+ +a+ ++  +q  evdiii talipg+ ap litk+mvd mk+gsv vdlaae+ggn e t   +++ t n+vk igytd+ srla+ ss l+  n ++++   +    ++ g + +d ed+ +rg+lvv++g+  +pp+ i +++++ +a  aa+ ve+e   + +p+  y+    + + a+  + +l+++ap +ef s +tvf l+ v gyy vw v++alh+plm+vtnaisg+  vg+l+ +++++   +  ++l++ a+l++++ni ggflvt++ml mf++
  MMETSP1174-20130828|35703_1  53 IGVPKETYDLEKRVAQTPESVKKLTAAGFKVKVESGAGVASTFSDSMYEESGAEISDMAGVWKSDMVMKLRAPSPDEASLL-EDRTLCSMVWPAQNPELLEQLQAQKSTVFAMDMIPRtLSRGQAFDALSSQANIAGYRCVIEAANEFGRFFAGQMTAAGKVPPAKVLVIGGGVAGLAAVQTAKNLGAIVRGFDVRAAAAEQIESMGGQFLKVEFEEDGAGAGGYAKEMSPEWFEAAAKMLKKQCEEVDIIIGTALIPGRKAPVLITKDMVDVMKPGSVTVDLAAETGGNIETTMKDQLIVTPNGVKCIGYTDMNSRLASTSSSLFSNNQMKFIMSAGpqtTKEKGVFVIDHEDEAVRGMLVVEAGKLMWPPPVIAPPTPPPTA--AAAAVEEEPLVPVDPKDAYMrsamWASAASAGVCGLGAIAPnAEFASMLTVFSLSGVCGYYTVWGVAPALHSPLMAVTNAISGMTAVGGLMLVGGGALptTTSQALGAGAVLISTVNISGGFLVTKKMLDMFKR 569
                  9****************************************************************************8766.5689*******************************967*******************************************************************************************************************************************************************************************************************99987542223455*********************************998766..56667888888888887775222133445566899*****9457*************************************************998753355679***************************86 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   2.6   2.1e-48   2.9e-45       2     349 ..      52     419 ..      51     422 .. 0.83

  Alignments for each domain:
  == domain 1    score: 152.6 bits;  conditional E-value: 2.1e-48
    TIGR00518   2 eiGvpkeiknnefrvaltpagvaellsrGhevlveeGaGvGsgfedeaykaaGaelvatakqvwdaelvlkvkeplpeeyeylrkgkvlftylhlaaereltealldsGvtaiayetv..eeadg.alpllapmsevaGrlaaqvGaqylektkGGrGvllgGvpGveagkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktry..............s......naveiedavkeadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvrvttydqptyakhevvhyavanmpgavpktstialtnatlpyvlkla.....nkGaekalednlalakGlntaeGkl 349
                  +iGvpke+ + e rva tp +v++l+  G +v ve+GaGv s+f+d+ y+++Gae+ ++   vw++++v+k++ p p+e + l + + l + +  a ++el e l+ +  t  a + +   +++g a+  l+  +++aG   +   a+ + +   G+    g vp   ++kv +iGgGv+G  a + a  lGa v  +d+ +   +q++ + g+ +k+ +              s      +a  ++   +e d++ig+ lipG+kap+l+++++v+ mkpG+v vd+a + GG +et   t  dq   + ++v  ++ ++m +    ts+  ++n  +++++        +kG+    +++ a++  l +++Gkl
  MMETSP1174-20130828|35703_1  52 TIGVPKETYDLEKRVAQTPESVKKLTAAGFKVKVESGAGVASTFSDSMYEESGAEI-SDMAGVWKSDMVMKLRAPSPDEASLL-EDRTLCSMVWPAQNPELLEQLQAQKSTVFAMDMIprTLSRGqAFDALSSQANIAGYRCVIEAANEFGRFFAGQMTAAGKVP---PAKVLVIGGGVAGLAAVQTAKNLGAIVRGFDVRAAAAEQIESMGGQFLKVEFeedgagaggyakemSpewfeaAAKMLKKQCEEVDIIIGTALIPGRKAPVLITKDMVDVMKPGSVTVDLAAETGGNIET---TMKDQLIVTPNGVKCIGYTDMNSRLASTSSSLFSNNQMKFIMSAGpqttkEKGVFVIDHEDEAVRGMLVVEAGKL 419
                  79*****************************************************6.78889*****************8766.5688999***************999999999866223345526899*********99999999999999999977666666...89********************************999999998887666654112111111111111111111344567778899******************************************998...7899************************************99754111115565556667777777777777776 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   2.1e-06    0.0029     142     197 ..     217     271 ..     202     332 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.1e-06
    TIGR02374 142 kaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGl 197
                  k  viGgG+ GL a ++ knlG  v   ++ +   a+q++ ++g+ L+ e e+ G 
  MMETSP1174-20130828|35703_1 217 KVLVIGGGVAGLAAVQTAKNLGAIVRGFDVRAA-AAEQIESMGGQFLKVEFEEDGA 271
                  558***********************9999886.689***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1067 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.16s 00:00:01.01 Elapsed: 00:00:00.69
# Mc/sec: 2041.05
//
Query:       MMETSP1174-20130828|35704_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.9e-207  684.9   0.0   9.1e-207  684.7   0.0    1.0  1  TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase


Domain annotation for each model (and alignments):
>> TIGR01358  DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  684.7   0.0  2.2e-210  9.1e-207       1     442 [.      57     499 ..      57     500 .. 1.00

  Alignments for each domain:
  == domain 1    score: 684.7 bits;  conditional E-value: 2.2e-210
    TIGR01358   1 wsleswrskpaaqlPeyPdaealeavldtleslPPlvlageilklkeklaevakGeafllqgGdcaesfkeveadnirdklrvllqmavvltygaslPvvkvgriaGqyakPrsepieakdgvtlpsyrGdvingaafdeaarvpdperlvrayaksaatlnllraltsgGyadlkkvheWnlefvkkspagaryeklaeeidealrfmsavgvaeae.alkrvelytsheallldyeealtrvdskegqlfdlsahllWiGertrqldgahveflrgvknPigikvgpsmeadellklievldPenePGrltlisrlGaekiaeklPelleavkaaGravvWvtdpmhGntleaasGyktrrfddilsevkeffevhkaeGthpGGvhleltGedvteclGGareitetdlasryetacdPrlnaeqslelaflvaeklrea 442
                  ws++swrsk   qlP y d+++l + +++l+++ Plv+agei++l ++la++++G+afll gGdcaesf+++++d++rd +rv+lqma+vlt+g+s+Pv+kvgriaGq+akPrs+ +e++dgv lpsyrGd++ng++f+ +ar+pdp+r+++ay+++a tln++ra+ +gGya+++++h+Wnl+fv+++++g+ry++la+++de+lrfm+a+g+++++ a++++ +yt+he+lll+yeealtr+ds++g ++d+sah+lW+Gertrql +ah+ef +gv nPigik++++  + +l++l e+l+P n PGrlt+i+r+Gaek++e+lP+l+  v+++Gr+v+W++dp+hGnt+++asG+ktr f++i++e+++ff+vh+a+Gth GGvhle+tGedvtec+GG  +i+ +dl+ ry+t+cdPrln +q+le+afl+ae++r++
  MMETSP1174-20130828|35704_1  57 WSPSSWRSKDVEQLPVYEDEKTLLEAEAKLAKCAPLVFAGEIRTLSDSLAQAQSGQAFLLMGGDCAESFEQFDTDKVRDSFRVILQMALVLTFGGSVPVIKVGRIAGQFAKPRSSGMETRDGVSLPSYRGDNVNGEDFTVEARTPDPNRMLKAYNQCAQTLNIIRAFSTGGYAAIERLHAWNLDFVGETEQGSRYRQLATKVDESLRFMKAIGMNTEDpAFTTTAFYTAHECLLLPYEEALTRQDSTTGLWYDCSAHMLWVGERTRQLKNAHLEFCKGVGNPIGIKISDKCDPMDLVRLTEILNPLNTPGRLTIIVRMGAEKLRENLPDLVTTVEKEGRKVLWISDPVHGNTITTASGFKTRDFSAIRAELRAFFDVHEALGTHAGGVHLEMTGEDVTECIGGLADISVEDLELRYKTQCDPRLNGNQALEIAFLIAERMRKR 499
                  89********************************************************************************************************************************************************************************************************************99998****************************************************************************************************************************************************************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.51
# Mc/sec: 1312.13
//
Query:       MMETSP1174-20130828|35705_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.3   3.0     0.0082   14.2   2.1    1.8  1  TIGR02753 sodN: superoxide dismutase, Ni
  ------ inclusion threshold ------
      0.014   12.1   0.4      0.015   12.0   0.3    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02753  sodN: superoxide dismutase, Ni
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.1     4e-06    0.0082      40     139 ..      12     119 ..       3     123 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4e-06
    TIGR02753  40 avlamtkkllalkapsskdadeqntfsrlvavkeeqaketkkeis.vlWtDyfkp.....ehlekfPeLhelv...wkalkllsaakvnidkakaeelldavekideif 139
                  ++ + + ++++l++  s+  ++ n+++r v+ kee+ak++   +s       +kp       ++++ +  + +   ++++  + ++k+ +d+a+a+ l +av+ +++++
  MMETSP1174-20130828|35705_1  12 TIRKAMLQIVELSETASQ-PQNFNQMTRWVNTKEEHAKKIITTVSeYCLCQRVKPfgatgSPFTSHQDYVDALlahHEVMTHAMKTKQTVDTAQADALEHAVDDFAKMY 119
                  444444445555555333.4556789*************99999834567888882222223455445444332336778888899*******************9997 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   7.5e-06     0.015      96     181 ..      40     127 ..       6     140 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.5e-06
    TIGR03224  96 aeqddeaaseg.ekvseveevea.aqkgstlapwsaakpyvn.lyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqs 181
                   ++++e+a +  ++vse    +     g+t +p+++ + yv+ l a+++ +t ++   + +  ++a   + h v df ++++p+ e ++
  MMETSP1174-20130828|35705_1  40 VNTKEEHAKKIiTTVSEYCLCQRvKPFGATGSPFTSHQDYVDaLLAHHEVMTHAMKTKQTVDTAQA-DALEHAVDDFAKMYLPLEEDEA 127
                  3333333333203333333222213469999**********7467777777777766665554444.46899***********988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 613.11
//
Query:       MMETSP1174-20130828|35709_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|35710_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-31  106.8   0.0    2.5e-31  106.5   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-05   22.2   0.0    5.3e-05   20.2   0.0    1.7  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.7e-05   21.7   0.0    3.4e-05   20.7   0.0    1.4  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0016   15.2   0.0      0.022   11.5   0.1    1.9  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.012   12.5   0.1       0.11    9.3   0.1    2.0  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.036   11.0   0.0       0.16    8.9   0.0    1.8  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   3.6e-34   2.5e-31       4     162 ..      12     168 ..      10     170 .. 0.98

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 3.6e-34
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                  +k+v++G+ +vGKs+L  ++ +++ + +  +p+++  + t+++    + +k++++DTaGqe++  + ++y+r++ + + v+di++  +++++++ k+ ke+++    ++v i l +nK Dl+d  +l+++++s+ a+ n++  +e+sa+  +++ +lf+ +
  MMETSP1174-20130828|35710_1  12 FKLVLLGDTAVGKSCLVVRFVRDE-FVEFQEPTIGAAFLTQSVSLSDVIVKFEIWDTAGQERYHSLAPMYYRDAMAAIVVYDITNK-ESFDSAK-KWVKELQQRGS-QNVLIALTGNKSDLEDerALSKDEASDWAQANGCMHFETSAKSSTGVKSLFQEI 168
                  79**********************.999999*******************************************************.*******.******99999.***************************************************976 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.7e-08   5.3e-05       3     167 ..      14     179 ..      12     193 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.7e-08
    TIGR03594   3 vaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkg..kefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk.kpvilvv..NKvdnkkeeae....aaefyslGlgevlaiSaehgrgikdLldeileelpeeeeee 167
                  ++++G + VGKS L+ r+v+    +  ++p +     +++++l++   +f++ DT+G  e+ ++l+    + a      a ++++ + ++e  +++  + +k L++++ ++v++++  NK+d ++e+a     a+++++ +    +  Sa+ ++g+k+L++ei  +lp+e+ + 
  MMETSP1174-20130828|35710_1  14 LVLLGDTAVGKSCLVVRFVRDE-FVEFQEPTIGAAFLTQSVSLSDviVKFEIWDTAGQ-ERYHSLAPMYYRDAM-----AAIVVYDITNKESFDSAK-KWVKELQQRGsQNVLIALtgNKSDLEDERALskdeASDWAQANGCMHFETSAKSSTGVKSLFQEIAMKLPKEKPQP 179
                  6788999999999999998764.45567788888888888888886678999999997.444445444444433.....344555555566555554.4555555555155444335599987754432111155566666666788999999999999999999999887654 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.9e-08   3.4e-05       8     177 ..      12     182 ..       5     189 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.9e-08
    TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllpl.GpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvl...nkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeeaeektlv 177
                   +++l+G + +GKS l+  +++++     + p   +   ++++ l ++     + DTaG +   +L  + ++ +++++   d+      ++ e  +  +++++el+++    ++++   nk+dl++e++     +++  ++++  +  +sak+++g+++l ++++ +lp+e+ +++++
  MMETSP1174-20130828|35710_1  12 FKLVLLGDTAVGKSCLVVRFVRDEFV-EFQEPTIGAAFLTQSVSLSDViVKFEIWDTAGQERYHSLAPMYYRDAMAAIVVYDI-----TNK-ESFDSAKKWVKELQQRGSQNVLIAltgNKSDLEDERALskdeASDWAQANGCMHFETSAKSSTGVKSLFQEIAMKLPKEKPQPSVI 182
                  57889999999999999999988863.33444444556777888877515678999999999999999888877766555553.....233.46677889999999886665554334499999988755433355667788888999***********************9888776 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.029        20     189     215 ..      11      37 ..       2      68 .. 0.85
   2 !   11.5   0.1   3.2e-05     0.022     272     350 ..      87     171 ..      79     172 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.029
    TIGR03156 189 vptvalvGYTNaGKstllnaltkaevl 215
                   +++ l G T  GKs l+ +++++e +
  MMETSP1174-20130828|35710_1  11 HFKLVLLGDTAVGKSCLVVRFVRDEFV 37 
                  5778899**********9999887655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 3.2e-05
    TIGR03156 272 llhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk..ee....avlvsAkkgegleeLleaieea 350
                   + v D++++e  +++++  + L++ g +++ + l  Nk d+ +e++l+++e+++  ++    +   sAk+++g+++L ++i+ +
  MMETSP1174-20130828|35710_1  87 AIVVYDITNKESFDSAKKWVKELQQRGSQNVLIALTGNKSDLEDERALSKDEASDwaQAngcmHFETSAKSSTGVKSLFQEIAMK 171
                  5779999999999999998889999999999999999*******9999888887754114444899**************99865 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00017      0.11     209     371 ..      11     176 ..       2     196 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00017
    TIGR00450 209 glklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvk..llDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeliitlkkkkkdlllvl...NKiDLa.....eleilkselkltvsllsakqlkikelvdlltekinalyskek 371
                   +kl+++G+t vGKS L+  +++++  +  + +      + +++ l  + vk  + DtAG       +  +  + +      a +v+y +  +++ + +++ +++l+++ ++ +l+    NK DL      ++++     + +  +   ++ k+  +v+ l ++i    +kek
  MMETSP1174-20130828|35710_1  11 HFKLVLLGDTAVGKSCLVVRFVRDE-FVEFQEPTIGAAFLTQSVSLSDVIVKfeIWDTAGQER-YHSLAPMYYRDA-----MAAIVVYDITNKESFDSAKKWVKELQQRGSQNVLIAltgNKSDLEderalSKDEASDWAQANGCMHFETSAKSSTGVKSLFQEIAMKLPKEK 176
                  5899999999999999998888765.3334445455566777777776544322788888433.333433333332.....35556666666666666666666665554443332223388888854332222222222333333344556667777777777776666654 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00023      0.16     157     244 ..      13      99 ..       5     106 .. 0.79
   2 ?    2.0   0.0      0.03        20      74     106 ..      98     131 ..      70     177 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00023
    TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvitt.SkfpgTTldlieipldkesvllDtpGiineeqianllskkdlkkivpkkeikpkty 244
                  + +++G t VGKS l+ + ++ +  + +  t+   f    + l ++ +  +  + Dt+G  + +++a +  ++ +  iv++   +++ +
  MMETSP1174-20130828|35710_1  13 KLVLLGDTAVGKSCLVVRFVRDEFVEFQEPTIgAAFLTQSVSLSDVIV--KFEIWDTAGQERYHSLAPMYYRDAMAAIVVYDITNKESF 99 
                  56789***************9877665534441678888888888888..889999999999999999888888888888777777766 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.03
    TIGR03597  74 ifdlegslikelkrfvkenkvl.lvvNKidllpk 106
                   fd  + ++kel++  ++n ++ l +NK dl  +
  MMETSP1174-20130828|35710_1  98 SFDSAKKWVKELQQRGSQNVLIaLTGNKSDLEDE 131
                  3777788888888776666544277899998543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 720.59
//
Query:       MMETSP1174-20130828|35706_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 1777.73
//
Query:       MMETSP1174-20130828|35711_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-34  115.1   2.6    1.1e-33  114.9   1.8    1.1  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    5.8e-18   62.8   1.2    7.3e-18   62.4   0.9    1.1  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    4.6e-13   46.5   3.1    1.2e-12   45.1   2.2    1.7  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    1.3e-05   22.6   0.0    1.8e-05   22.2   0.0    1.1  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    1.9e-05   21.4   2.7    0.00067   16.3   1.4    2.1  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    0.00037   17.7   3.9    0.00041   17.5   2.7    1.1  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family


Domain annotation for each model (and alignments):
>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   1.8   1.6e-36   1.1e-33     108     326 ..      65     288 ..      13     289 .. 0.81

  Alignments for each domain:
  == domain 1    score: 114.9 bits;  conditional E-value: 1.6e-36
    TIGR02825 108 wpdtlplslalgtvgm.pgltayfglleicgv.kggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvaylk.klgfdvafnyk.tvksleetlkkaspdgydcyfdnvggefsntvirqmkkfgriaicgaistynrt..gplppgpapevviy.qelrmegfivnrwkgevrqkalkellkwvlegkiqykeyviegfenmpaafmgmlkgenlgktiv 326
                   p  +p   +lg +g+  g+ta+ g++++ g+ k getv+v+aaagavg +  q+a   g++v+g ag ++kv +l   l +  a++yk t +++ + l+k +pdg d  +d+vgg   +  +rq++  gr+ icga+s+y         +gp+    +  +   m+gf v ++       a++ ll     g++ ++e v +g++ +  a+ +m+ g  +g+ +v
  MMETSP1174-20130828|35711_1  65 LP-GVPEVASLGLLGLtTGITAWVGMFKVLGApKRGETVVVTAAAGAVGMIASQLALTTGARVIGVAGGEKKVMFLTdTLHLTGAIDYKsTTETFADQLEKLCPDGIDFMMDQVGGSQLDDCLRQINPGGRVVICGAVSQYSGNlnKGKVEGPSEYLKLAeKGATMKGFNVMQYMTSLP-MAVTSLLWHWNMGRVVVHEQVEDGIDSFAPAMEKMFSGGHIGRLLV 288
                  44.4788889999998469***********98799****************************************972689999****966899***********************************************643113345678877666514589*********98876.678888877789******************************9876 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.9   1.1e-20   7.3e-18      67     324 ..      23     289 ..      12     290 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.1e-20
    TIGR02824  67 GevvavgeevskfkvGdrvcaLvagGgyaeyv..vveakqvlpvpeglslveaAalp..EtffTvwsnlfel.aklkagetvLihggasGiGttaiqlakalgakvlvtagsdekle.aaekLGadvainyr..eedFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggakaeldlaklla....krltltgstlRarsa.eeKaaiaaeleekvwpllaegkvrpvidkvfpledaakAhellessehiGKivLt 324
                  G+v+a+g  ++k++vG + ++++ +  y++ +  v+   ++l++p g+  v + +l    t +T+w  +f++ +  k+getv++ ++a+ +G  a qla  +ga+v+  ag ++k+   +++L  + ai+y+  +e F++++++     G+d ++D vggs l++ l+ ++  Gr+v+ + +   + +l+ +k+       +l+ +g+t++  ++ +  +++  ++++ +w + + g+v ++ +    ++  a A e++ s+ hiG+++++
  MMETSP1174-20130828|35711_1  23 GQVIAAG-SSAKLSVGTKCMGMLGAQTYSKLTpgVMGPMKLLKLP-GVPEVASLGLLglTTGITAWVGMFKVlGAPKRGETVVVTAAAGAVGMIASQLALTTGARVIGVAGGEKKVMfLTDTLHLTGAIDYKstTETFADQLEKLCP-DGIDFMMDQVGGSQLDDCLRQINPGGRVVICGAVSQYSGNLNKGKVEGpseyLKLAEKGATMKGFNVmQYMTSLPMAVTSLLWHW-NMGRVVVHEQVEDGIDSFAPAMEKMFSGGHIGRLLVK 289
                  8999999.57788****************9864477888999999.55555555554225779*******96378899**************************************9778899999***997335789999998877.7*********************************999999999888541111456678888988777466677777777777755.5666666666666788888999999999999988876 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   2.2   1.8e-15   1.2e-12     123     323 ..      77     289 ..      35     290 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 1.8e-15
    TIGR02823 123 lG.tAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeee....eylkelGakevisreeleeekkkplekerwagavDtvGgkvlanvlkqlkyggavaacGlaagae..let.tv......lPfilRgvsllGidsvevplekreavWerlaedlkleeleelvk.eisleelpevlekllagevkGRvvvk 323
                  lG t G TA + ++++   g+ ++   v+Vt A+G+Vg++a +l  + G +v+ v g +++     ++l+  Ga +  s +e  +++   l  +  + ++D+vGg++l+  l+q++ gg v +cG ++ ++  l+   v      l    +g ++ G + +++ ++   av + l  ++++ ++    + e  ++ ++ ++ek+ +g + GR++vk
  MMETSP1174-20130828|35711_1  77 LGlTTGITAWVGMFKVL--GAPKRGETVVVTAAAGAVGMIASQLALTTGARVIGVAGGEKKVmfltDTLHLTGAIDYKSTTETFADQLEKLCPDGIDFMMDQVGGSQLDDCLRQINPGGRVVICGAVSQYSgnLNKgKVegpseyLKLAEKGATMKGFNVMQYMTSLPMAVTSLL-WHWNMGRVVVHEQvEDGIDSFAPAMEKMFSGGHIGRLLVK 289
                  34356777776666654..445555579*****************************99986223355666788888888777777888899999******************************98764311332122111111455667777777777666555555554433.4566655444333356677777777777777777777776 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.6e-08   1.8e-05     124     245 ..      77     197 ..      64     212 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.6e-08
    TIGR02817 124 lPl.taitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewvke.l...GahavidhskplkaqleklkleevsyvisltqtdqhleeivellaPqGrlal 245
                  l l t itaw  +f  l+      ++ ++++++ aaG vg i+ qla   t+++vi+ a       ++++ l   Ga      ++ +++qlekl  + +++++       +l++  + ++P Gr+ +
  MMETSP1174-20130828|35711_1  77 LGLtTGITAWVGMFKVLGAP----KRGETVVVTAAAGAVGMIASQLAL-TTGARVIGVAGGEKKVMFLTDtLhltGAIDYKSTTETFADQLEKLCPDGIDFMMDQVGG-SQLDDCLRQINPGGRVVI 197
                  455256*********99987....45689*****************97.589*******9988888776533222555555556788999999999999999876654.457888888899998766 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.4   9.7e-07   0.00067     187     230 ..      96     139 ..      72     164 .. 0.81
   2 !    4.1   0.0    0.0048       3.3     261     318 ..     151     207 ..     140     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.7e-07
    TIGR01751 187 lkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeia 230
                   k+G++v++  aaG +G +a qla ++G+  ++v   e+k  + 
  MMETSP1174-20130828|35711_1  96 PKRGETVVVTAAAGAVGMIASQLALTTGARVIGVAGGEKKVMFL 139
                  489********************************999998765 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0048
    TIGR01751 261 wtkevkrfgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvicggttGynld 318
                  +  +++ f  ++ ++   + ++ +++ +G   +   +  ++ gG vvicg+ + y  +
  MMETSP1174-20130828|35711_1 151 YKSTTETFADQLEKLCP-DGIDFMMDQVGGSQLDDCLRQINPGGRVVICGAVSQYSGN 207
                  55556666666665555.778999999999999999999**************99865 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.7     6e-07   0.00041     169     308 ..      81     225 ..      19     284 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6e-07
    TIGR03989 169 CgvttGfGsavkaadvkaGdtvvvvG.iGGvGinavqGaavaGarkvvav...dpvefkrekalklGathavasieealelvaeltnGkgadkaiitvgevegelieealklvakgGrvvvtgl.....akladedvklnlleltllqk 308
                   g+t+ +G     +  k G+tvvv    G vG+ a q a ++Gar + +      v f  ++ +  Ga    +    ++e+ a+  +    d     +++v g+++++ l+ ++ gGrvv+ g      ++l++ +v+ +   l l +k
  MMETSP1174-20130828|35711_1  81 TGITAWVGMFKVLGAPKRGETVVVTAaAGAVGMIASQLALTTGARVIGVAggeKKVMFLTDTLHLTGAIDYKS----TTETFADQLEKLCPDGIDFMMDQVGGSQLDDCLRQINPGGRVVICGAvsqysGNLNKGKVEGPSEYLKLAEK 225
                  345555566666777899****99762688**************86644322235566666655556654444....444444444455567777899***********************9752222234555566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1101.17
//
Query:       MMETSP1174-20130828|35712_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1352.00
//
Query:       MMETSP1174-20130828|35715_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1275.89
//
Query:       MMETSP1174-20130828|35714_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 1812.17
//
Query:       MMETSP1174-20130828|35718_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|35719_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 869.31
//
Query:       MMETSP1174-20130828|35716_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 1916.98
//
Query:       MMETSP1174-20130828|35720_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-134  446.5   1.1   1.5e-126  420.8   0.0    2.0  2  TIGR00551 nadB: L-aspartate oxidase
    1.5e-94  315.3   1.3    1.5e-89  298.8   0.1    2.0  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
    1.6e-75  252.2   3.0    1.1e-72  242.9   0.3    2.0  2  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
    2.6e-61  205.7   2.0    3.9e-60  201.9   0.2    2.3  2  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
    1.1e-52  177.4   0.0    2.5e-51  172.9   0.0    2.4  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
    5.7e-36  122.0   0.0      1e-25   88.2   0.0    2.4  2  TIGR01813 flavo_cyto_c: flavocytochrome c
      1e-05   22.6   0.0    1.7e-05   21.9   0.0    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00038   18.1   0.1     0.0013   16.3   0.0    1.9  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00047   16.8   0.1    0.00079   16.0   0.1    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
    0.00077   16.1   0.0     0.0014   15.3   0.0    1.4  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00094   15.5   0.0     0.0014   14.9   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0011   16.1   0.5     0.0064   13.7   0.1    2.2  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0011   15.1   0.0      0.002   14.3   0.0    1.3  1  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0013   15.4   0.1     0.0013   15.4   0.1    2.0  3  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0017   15.3   0.0      0.003   14.5   0.0    1.4  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0075   12.8   0.0      0.011   12.2   0.0    1.3  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
  ------ inclusion threshold ------
      0.019   11.6   0.0        1.1    5.9   0.0    2.3  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.029   10.9   0.0       0.06    9.9   0.0    1.4  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
       0.03   11.0   0.1      0.055   10.1   0.1    1.3  1  TIGR01438 TGR: thioredoxin and glutathione reductase


Domain annotation for each model (and alignments):
>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.8   0.0  7.1e-129  1.5e-126       2     392 ..       2     401 ..       1     412 [. 0.94
   2 !   24.6   0.1   9.1e-09     2e-06     403     487 ..     451     545 ..     424     546 .. 0.81

  Alignments for each domain:
  == domain 1    score: 420.8 bits;  conditional E-value: 7.1e-129
    TIGR00551   2 eadvvviGsGaagLsaalalaekyr.vvvlska.evkesasvyaqgGiaaalaetDsidahveDtlaaGaglcdeeavesvvsdakeavqe.Lve...aGvsfdrneqgslaltregghsrrRilhaadatGrevistLlkkakaepkveilerevaldllie.tgrvvGvlvves..etvevlhakavvlatGGlgklyaattnpkvstGdgialalraGvevrdleFvqFhPtalvkkrvrrfLiteavRGeGaiLvdrdGkrfvadvhprGeLapRDivaraideelkktekdcvflDlsaiea..iksrFPtitaklrkaGidierepiPvvPaahytiGGisvdaygrtevkGLYaiGevastGlhGanRlasnsLLeclvfGasaaraisrkklaa 392
                  + +v+viGsG+ g +aal+ a+ ++ v++l+ + +  es+s++aqgGi    ae+D +d    D  +aGa+ + + av+++ +d++ +v++ L++   a v+fdrn  gslal +eg+h r Rilh  d tG+++++ +  ++ ++ ++ +l++ +aldl+++ +g++ G++v +s  ++v  ++a+  vlatGG+g++y  t+np  + Gdg+a+a+r G++v+++e++qFhPt+l+ ++ rrfL+tea+RGeGaiL++++G+rf++++hp GeLapRD+var i +e+ + ++  vflD+s+ ++  ik+rFP i++++++ G d++++piPvvPaahy +GG++ d  grt+v+GL  +Geva+tGlhGanRlas sLLe+lv+G  aa++ +++ +a 
  MMETSP1174-20130828|35720_1   2 NSTVLVIGSGIGGCTAALRSADLGHqVTLLTANdDPLESNSFWAQGGIIY-KAEDDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCVDNfLLKdaiAEVPFDRNDDGSLALCLEGSHNRARILHWRDHTGKAIMESMIRAVVEHDSITLLSGCTALDLTLDdHGNCSGAIVLHSasGNVRRISARFTVLATGGCGEVYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTLYVPGERRFLLTEALRGEGAILLNHEGHRFAPHYHPDGELAPRDVVARMILSEMGDKHE-HVFLDISHRDSewIKQRFPGIYKHCLARGFDMTEKPIPVVPAAHYFCGGVVSDLRGRTSVPGLLVAGEVACTGLHGANRLASTSLLEGLVWGNAAAETCAESLAAD 401
                  578****************9998766*****986889***********65.58999*********************************8724442224589***********************************************************99789*******9987789999***********************************************************************************************************99887.8*******99889***********************************************************************************9998776654 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 9.1e-09
    TIGR00551 403 evrleteddraelqrkvselrsllweaagivrlaesLeealaklkelkeevdel..........lelrnLlqvaklvvasallReesRGahyrld 487
                     ++te d a++++ ++ +++ +w ++givr++++L+ea + l ++    + l            lrn  +va+ + ++a    es G+hy  d
  MMETSP1174-20130828|35720_1 451 MGEIKTEVDPAVIKELWTTIQTTMWTKVGIVRQKSTLDEAKVILADTLAAAEALsrgkvasnalTGLRNGALVAREIAFAAARNSESVGTHYYID 545
                  23356677999*****************************999988877777768899999999999*************************876 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.8   0.1     7e-92   1.5e-89       2     405 ..       5     399 ..       4     411 .. 0.93
   2 !   15.6   0.1   4.3e-06   0.00093     406     527 ..     431     545 ..     422     549 .. 0.80

  Alignments for each domain:
  == domain 1    score: 298.8 bits;  conditional E-value: 7e-92
    TIGR01812   2 vvivGaGlAGlraAveaakkglkvavisk.vyptRsHsvaAqGGiaaalanvddddsvelhayDtvkGsDyladqdavellvkeapeavlel....ekmGvpfsRledgriaqRpFGgaskeRtcyaaDktGhallhtlyeellkl.gveifeeyfvldlile.dkevkGvvaidlktgevvvlrakavvlatGGagrvyktttnavivtGdGlaialragvplkdmEfvqfHPtglaksg...iLitEgaRGeGgyLvnkeGeRfmeryaPeklelapRDvvsralvteireGrgveseakdyvyldlrhlgeekieerlpqirelakkfagvDpvkeliPvrPtaHYsmGGietdkkGevilenesivkGlfaaGEaacvsvHGanRLGsnsllelvvfGriagealaeavk 405
                  v+++G+G+ G+ aA+  a  g++v +++    p  s s  AqGGi     +++ dd+ ++ a D  k + y + + av+ l++++p  v ++    +   vpf R++dg++a    G++++ R  +  D+tG+a++ +++ +++++ ++++++ + +ldl l+ ++++ G+++++ + g+v  ++a+ +vlatGG g vy +t+n     GdGla+a+r g ++++mE++qfHPt+l+  g    L+tE+ RGeG++L+n+eG+Rf  +y P+  elapRDvv+r ++ e+        +++++v+ld++h  +e i++r+p i++ + +  g D ++++iPv P+aHY  GG+  d +G++       v Gl  aGE+ac  +HGanRL s slle +v+G++a+e+ ae ++
  MMETSP1174-20130828|35720_1   5 VLVIGSGIGGCTAALRSADLGHQVTLLTAnDDPLESNSFWAQGGII---YKAE-DDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCVDNFllkdAIAEVPFDRNDDGSLALCLEGSHNRARILHWRDHTGKAIMESMIRAVVEHdSITLLSGCTALDLTLDdHGNCSGAIVLHSASGNVRRISARFTVLATGGCGEVYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTLYVPGerrFLLTEALRGEGAILLNHEGHRFAPHYHPD-GELAPRDVVARMILSEMG-------DKHEHVFLDISHRDSEWIKQRFPGIYKHCLA-RGFDMTEKPIPVVPAAHYFCGGVVSDLRGRTS------VPGLLVAGEVACTGLHGANRLASTSLLEGLVWGNAAAETCAESLA 399
                  78*******************99999875168************85...4444.899***************************99888654223244689*********************************************99**************9778************************************************************************8775558***************************8.59************9973.......3578************************976.8*************************988876......89**************************************99985 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 4.3e-06
    TIGR01812 406 kakvdeakleeeavkkeekllellkeeekgeeevakireelketmednvgvfRdeellkkavkeleelkekkkkvkikdkskvfntdllealelknllelaevvaasAlnRkEsRGaHaReD 527
                  ++++++a+ e e+++ +e+ + ++k+e  +   ++++ + +++tm+ +vg+ R++++l++a   l++        +   ++kv+   l+    l+n   +a+ +a +A+   Es G+H+  D
  MMETSP1174-20130828|35720_1 431 SSESESASEEPEEIEDAESSMGEIKTE-VDPAVIKELWTTIQTTMWTKVGIVRQKSTLDEAKVILADTLAAA---EALSRGKVASNALT---GLRNGALVAREIAFAAARNSESVGTHYYID 545
                  445556667778888888888888884.47788899999*********************998887766555...56678888776665...58899999******************9877 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.9   0.3   5.1e-75   1.1e-72       5     424 ..       5     407 ..       2     415 .. 0.91
   2 !    9.8   0.1   0.00019     0.041     418     533 ..     433     542 ..     423     549 .. 0.77

  Alignments for each domain:
  == domain 1    score: 242.9 bits;  conditional E-value: 5.1e-75
    TIGR01816   5 vvvvGaGGaGlraalelakeglktavvtkl.fPtrshtvaaqGGisaalgnveeddwewhlydtvkGsdylgdqdaieymckeapeavle..l..ekmGlPfsrteeGkiyqrkfGGqtkdfGkaaveracaaadrtGhallhtlyqqslkad.tsffveyfaldlile.dgevrGvialeletGeihvfrakavvlatGGaGriyasttnaltltGdgvgivlraGlPlqdlefvqfhPtGiagaG...vlitegvrGeGGillnaeGerfmeryaPtikdlasrdvvarsmvleireGrGvGkekdhvylkldhlgeevleeklpgiselaktfagvdpvkdpipvlPtvhylmGGiptnlkGqvlrdadgndsiveGlyavGeaacvsvhGanrlGtnslldlvvfGraaglslaelikegsdvkel 424
                  v+v+G+G  G  aal+ a+ g++++ +t    P  s +  aqGGi   + ++e+d+ ++   d  k + y + + a++ +++++p +v +  l      +Pf+r ++G ++    G + +       +r     d tG a+++++ ++ + +d ++ +   +aldl l+ +g++ G i l+ ++G++ ++ a+ +vlatGG G +y  t+n   + Gdg+++++r G  + ++e++qfhPt ++  G    l+te++rGeG illn eG rf   y P   +la+rdvvar +  e      +G++ +hv+l+++h  +e +++++pgi + +    g d +++pipv+P++hy  GG+ ++l+G++         +v+Gl+ +Ge+ac  +hGanrl + sll+  v+G aa+ + ae++  + +++ +
  MMETSP1174-20130828|35720_1   5 VLVIGSGIGGCTAALRSADLGHQVTLLTANdDPLESNSFWAQGGI---IYKAEDDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCVDNflLkdAIAEVPFDRNDDGSLALCLEGSHNR-------ARILHWRDHTGKAIMESMIRAVVEHDsITLLSGCTALDLTLDdHGNCSGAIVLHSASGNVRRISARFTVLATGGCGEVYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTLYVPGerrFLLTEALRGEGAILLNHEGHRFAPHYHPD-GELAPRDVVARMILSE------MGDKHEHVFLDISHRDSEWIKQRFPGIYKHCL-ARGFDMTEKPIPVVPAAHYFCGGVVSDLRGRT---------SVPGLLVAGEVACTGLHGANRLASTSLLEGLVWGNAAAETCAESLAADLNCTTV 407
                  789**********************9996527************9...5789*********************************998652232134579**********9988777655.......699999*****************9983578899******999689************************************************************************9886668***************************8.58*********99988......599************************99765.5799************************9974.........68**************************************99998877666655 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00019
    TIGR01816 418 gsdvkelkenaeeesvkrldklraaegkervaelrkelqksmqnhvavfrteevlkkgvekiselkerlkrvkvkdkskvfntdlvealeldnllevaeatvvsaearkesrGaha 533
                  +s+ +  ++++ e + + + +++++ +   ++el + +q +m ++v++ r++++l+++      l++ l+  +   ++kv   + +    l n   va+ ++++a+   es G+h 
  MMETSP1174-20130828|35720_1 433 ESESASEEPEEIEDAESSMGEIKTEVDPAVIKELWTTIQTTMWTKVGIVRQKSTLDEAKVI---LADTLAAAEALSRGKVASNA-LTG--LRNGALVAREIAFAAARNSESVGTHY 542
                  44555556667778889999************************************98655...45667777777888876544.444..45555578888999999999999985 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.2   1.8e-62   3.9e-60       4     415 ..       3     400 ..       1     412 [. 0.90
   2 ?    3.0   0.0      0.03       6.5     448     536 ..     464     546 ..     432     555 .. 0.82

  Alignments for each domain:
  == domain 1    score: 201.9 bits;  conditional E-value: 1.8e-62
    TIGR01176   4 adiavigaggaglraaiaaaeanphlevaliskvypmrshtvaaeggsaavikdedsldehfhdtvaggdwlceqdvveyfvaeapke....lvqlekwgcpwsrkedgevnvrrfggmkvertwfaadktgfhllhtlfqtslkysqikrldeyfvvdllvdd.grvrglvaielaegelvtikadavvlatggagrvyrfntnggivtgdgmalalragvplrdmefvqyhptglpgtg...illtegargeggilvnkdgyrylqdyglgketplgepknkymelgprdkvsqafvheqrkgntidtplgdvvyldlrhlgeellderlpficelakayvnvdpvkelipvrpvvhytmggietdincetrikglfavgecasvglhganrlgsnslaelvvfgrlagekaaeraae 415
                  + + vig+g  g  aa+  a+   ++   l +   p+ s +  a+gg    ++ +d  d+ + d    g +  ++ +v+ + ++ p      l++      p+ r++dg++++   g     r     d+tg  ++ ++++ ++++  i+ l    ++dl +dd g+  g + ++ a g++ +i a   vlatgg+g vy  ++n     gdg+a+a+r g+ + +me++q+hpt l   g    llte+ rgeg il+n++g+r+   y      p         el prd v++ ++ e    +     + + v+ld+ h   e +++r+p i + + a  + d + ++ipv p++hy  gg+ +d  + t ++gl  +ge+a+ glhganrl s sl e +v+g+ a e  ae  a 
  MMETSP1174-20130828|35720_1   3 STVLVIGSGIGGCTAALRSADLGHQVT-LLTANDDPLESNSFWAQGGIIYKAE-DDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCvdnfLLKDAIAEVPFDRNDDGSLALCLEGSHNRARILHWRDHTGKAIMESMIRAVVEHDSITLLSGCTALDLTLDDhGNCSGAIVLHSASGNVRRISARFTVLATGGCGEVYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTLYVPGerrFLLTEALRGEGAILLNHEGHRFAPHYH-----P-------DGELAPRDVVARMILSEMG--D-----KHEHVFLDISHRDSEWIKQRFPGIYKHCLA-RGFDMTEKPIPVVPAAHYFCGGVVSDLRGRTSVPGLLVAGEVACTGLHGANRLASTSLLEGLVWGNAAAETCAESLAA 400
                  56889***********99999876554.4677889************877665.5678*************************987541111344455689***********************************************************776549**********************************************************************976664458*********************99885.....4.......358**********999974..3.....34679********************99987.689*******************************************************************99987654 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.03
    TIGR01176 448 akiraemgatleegagiyrdeellqktidklaelkerfkrvsikdkskvfntdllylielgygldvaealvesalarkesrgahqrlde 536
                   ++ + +++t+ + +gi r++ +l+++      l +  + ++   ++kv    l+    l +g  va  ++ +a +  es g+h  +d 
  MMETSP1174-20130828|35720_1 464 KELWTTIQTTMWTKVGIVRQKSTLDEAK---VILADTLAAAEALSRGKVASNALT---GLRNGALVAREIAFAAARNSESVGTHYYIDD 546
                  456678899999*********9999874...457788899999999999887776...466778899999999999********99987 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.0   1.2e-53   2.5e-51       1     432 [.       5     404 ..       5     551 .. 0.86

  Alignments for each domain:
  == domain 1    score: 172.9 bits;  conditional E-value: 1.2e-53
    TIGR01811   1 vivvGtGlaGlsaaiklaelGydvklfsyqdavrrahsiaaqGGinaaknkkndgdsvyrlfddtvkGGdfraresnvkrlaeasveiidll...dal.GvpfareygGlldtrsfGGvqvsrtfyargqtGqqlllaldealrrqiaaGlvelyerrelldiivvdedrarGivarnlvtgeletfsadavilatGGygnvfylstnamnsnasavarayekGayfanpefiqihPtaiPvdgefqskltlmseslrndGriWvpkeksddrdankipedkrdyflerkyPafGnlvPrdiasraikevcdegkgvgngenavyldlsdaierlgrkeleakygnlfeiyekivgddPykvPmkifPavhytmGGlwvdydemttvpGlfaaGeadfs.dhGanrlGansllsalvdGlvvlPatienylgleksa 432
                  v+v+G+G+ G +aa + a+lG +v+l++ +d +  + s  aqGGi     +k+++d +  l  d  k G +++++s v +l++  +  +d +   da+  vpf r+ +G l+    G     r  + r +tG+ ++ ++   +r+ + + +++l ++   ld+  +d++++ G ++     g++ + sa   +latGG g v+  + n   + +  +a a + Ga  +n e++q+hPt++ v g   ++  l++e+lr++G i                e++r  f  + +P  G+l Prd+ +r i + +      g+ ++ v+ld+s+++     + +++++ ++++    + g d  + P+ ++Pa hy  GG+  d    t+vpGl  aGe+  +  hGanrl + sll++lv G  +  ++ e + + + + 
  MMETSP1174-20130828|35720_1   5 VLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESNSFWAQGGII----YKAEDDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCVDNFllkDAIaEVPFDRNDDGSLALCLEGSHNRARILHWRDHTGKAIMESM---IRAVVEHDSITLLSGCTALDLTLDDHGNCSGAIVLHSASGNVRRISARFTVLATGGCGEVYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTLYVPG---ERRFLLTEALRGEGAILLNH------------EGHR--FAPHYHP-DGELAPRDVVARMILSEM------GDKHEHVFLDISHRDS----EWIKQRFPGIYKHC-LARGFDMTEKPIPVVPAAHYFCGGVVSDLRGRTSVPGLLVAGEVACTgLHGANRLASTSLLEGLVWGNAAAETCAESL-AADLNC 404
                  79******************************************95....9**************************************975333454269********************************987655...566677789****************************************************************************************99984...5889************9887............5555..4444455.5************98765......567789*********9....99******987643.456889999**********************************998736*****************998765555444.444443 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   4.7e-28     1e-25       2     303 ..       5     302 ..       4     330 .. 0.84
   2 !   31.2   0.2   9.1e-11     2e-08     379     444 .]     333     392 ..     322     392 .. 0.88

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 4.7e-28
    TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkkkgieDskelfikdtlkggrgindpelvkklaeesadavd..wlkd...evklkldk.....laqlGGhsvkRahrpkggaasGaeivqklskkakkeg.velrlnskvedlikddqgqvtGvkvke.kgkkikikaakaVvlatGGfgsnkelikkydPelkelestnqkgatgdglkvlekigaalvdldeiQahpta..spdegkfliaealrglgailvnpkdGeRFv......nElatRdtvsdailaqrgkenrallvfdek 303
                  v+v+GsG+ G +aal+  + g +  ++    + +  Ns  a gg+              D ++ + +d  k+g  + +++ v+kl++ +   vd  +lkd   ev ++ ++     l   G h+ +R +  ++  ++G  i++ + +++ + + ++l    ++ dl  dd+g+  G  v +  +++++ + a+  vlatGG g+              l+++n + a gdgl ++++iga++ +++++Q hpt+   p e +fl++ealrg gail+n ++G+RF        Ela Rd+v+ +il++ g + +  +++d +
  MMETSP1174-20130828|35720_1   5 VLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESNSFWAQGGIIYKAE--------DDHPDYLASDIHKAGAYKSKKSAVDKLTHDGPGCVDnfLLKDaiaEVPFDRNDdgslaLCLEGSHNRARILHWRD--HTGKAIMESMIRAVVEHDsITLLSGCTALDLTLDDHGNCSGAIVLHsASGNVRRISARFTVLATGGCGE------------VYLNTSNPPCARGDGLAMAMRIGATVSNMEYMQFHPTTlyVPGERRFLLTEALRGEGAILLN-HEGHRFAphyhpdGELAPRDVVARMILSEMGDK-HEHVFLDIS 302
                  89*******************66666667788999******999976543........59********************************99666788766666654431122134458888888888888..*********9988766543999999****************76655378899999*************9............2479999999**************************972256777*****************.******85554445***************9988.555555544 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 9.1e-11
    TIGR01813 379 kvtPkvHytmGGvkintkaeVldensekpikgLfAaGEvt.GgvHGanRLggnaildiivfGriaae 444
                   v P+ Hy  GGv  + +         + ++gL  aGEv+  g+HGanRL+++++l+ +v+G  aae
  MMETSP1174-20130828|35720_1 333 PVVPAAHYFCGGVVSDLRG-------RTSVPGLLVAGEVAcTGLHGANRLASTSLLEGLVWGNAAAE 392
                  588**********888765.......3589*********7369*******************99986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.1e-08   1.7e-05       1      52 [.       4      55 ..       4      88 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 8.1e-08
    TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypllsa 52
                 +v+vIG Gi g+++al+ a  G+qvtll +++++ +  S  +qG +  + ++
  MMETSP1174-20130828|35720_1  4 TVLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESNSFWAQGGIIYKAED 55
                 589**********************************999999866555544 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.2e-06    0.0013       3      32 ..       5      34 ..       4      42 .. 0.91
   2 ?   -3.0   0.0       4.6     1e+03     107     156 ..     150     204 ..     136     233 .. 0.54
   3 ?   -3.4   0.0       6.2   1.3e+03     207     240 ..     474     506 ..     429     521 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.2e-06
    TIGR02032  3 vvvvGaGpaGssaAlrlakkGlrVlllekk 32
                 v+v+G G+ G++aAlr a+ G++V ll  +
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTAN 34
                 89************************9766 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.6
    TIGR02032 107 elllettvlsveied.....ekvkvevredekkevtakivigAdGakskvakklg 156
                  +ll + t+l+ + +d      + +++ + ++ + ++a++ + A+G  + v  + +
  MMETSP1174-20130828|35720_1 150 TLLSGCTALDLTLDDhgncsGAIVLHSASGNVRRISARFTVLATGGCGEVYLNTS 204
                  5555555555555555555444444444445566778888888777666655444 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 6.2
    TIGR02032 207 gtanvGvgvlseekedlkkklkeflaerpeklkd 240
                     +vG++ +++  +++k +l + la+ + +l++
  MMETSP1174-20130828|35720_1 474 MWTKVGIVRQKSTLDEAKVILADTLAAAE-ALSR 506
                  45677888877777777777777777664.4554 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   3.6e-06   0.00079       1      41 [.       5      45 ..       5      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.6e-06
    TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvle 41
                 ++ViG+G+gG  +A+r a  G++vt+l ++d+p    + + 
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESNSFWA 45
                 68*****************************9865555555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.3e-06    0.0014       3      31 ..       4      32 ..       2      36 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 6.3e-06
    TIGR01350  3 dvvviGgGpgGYvaAiraaqlglkvalve 31
                  v+viG+G+gG +aA r+a lg +v+l+ 
  MMETSP1174-20130828|35720_1  4 TVLVIGSGIGGCTAALRSADLGHQVTLLT 32
                 589**********************9875 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.3e-06    0.0014     381     413 ..       4      36 ..       1      46 [. 0.91

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.3e-06
    TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereee 413
                  +vlv+G+G +G +aa  +a  Gh+vtll  ++ 
  MMETSP1174-20130828|35720_1   4 TVLVIGSGIGGCTAALRSADLGHQVTLLTANDD 36 
                  79*************************988765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1     3e-05    0.0064       1      30 [.       5      34 ..       5      37 .. 0.93
   2 ?   -0.2   0.0      0.49   1.1e+02     393     410 ..     352     369 ..     345     404 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3e-05
    TIGR03467  1 vvvvGgGlAGLaAAveLaraGvrvtllEar 30
                 v+v+G G+ G++AA++ a+ G +vtll a 
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTAN 34
                 79************************9875 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.49
    TIGR03467 393 rtplpnlfLAGDwtatgy 410
                  rt++p+l +AG+ + tg+
  MMETSP1174-20130828|35720_1 352 RTSVPGLLVAGEVACTGL 369
                  566666666666666653 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.2e-06     0.002       2      39 ..       4      41 ..       3      52 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.2e-06
    TIGR00136  2 dviviGaGhaGieaalaaarlgaktllltlnldtigkl 39
                 +v+viG+G  G+ aal +a lg +++llt n d + + 
  MMETSP1174-20130828|35720_1  4 TVLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESN 41
                 699***************************99877665 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     6e-06    0.0013       3     188 ..       4     197 ..       2     213 .. 0.78
   2 ?   -2.1   0.1       1.3   2.7e+02     393     432 ..     356     395 ..     346     399 .. 0.85
   3 ?   -4.0   0.1       4.5   9.8e+02     384     418 ..     481     515 ..     477     533 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6e-06
    TIGR02485   3 dvlviGgGlaglCaaiearraGasvllleaaPrdlrGGna...rhgrnlrvahdipldvlvdaypaeelerdllkvtggrtde...rlarllierassiarwliahGvhlqPaaaGtlpysrrtafllGGGkalvnalyas.aerlGveiryeaeveriereedgrat..iaarl.aaaderiatkavvlaaGGlg 188
                   vlviG+G+ g  aa+ ++  G  v ll a   +l   n+   + g   +   d p  +  d + a  ++     v +  t++    + ++l++ a +  ++ +++   l   + G+ + +r   +    Gka++ ++++   e+  + +  + +   ++ +++g+    i  ++ +++  ri+++  vla+GG g
  MMETSP1174-20130828|35720_1   4 TVLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLE-SNSfwaQGGIIYKAEDDHPDYLASDIHKAGAYKSKKSAVDK-LTHDgpgCVDNFLLKDAIAEVPFDRNDDGSLALCLEGSHNRARILHWRDHTGKAIMESMIRAvVEHDSITLLSGCTALDLTLDDHGNCSgaIVLHSaSGNVRRISARFTVLATGGCG 197
                  69**************************98766554.44412044455555566666666788888888776555443.333301145578999*********99999***************************99987626889999999999999999888876511445555678899************87 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
    TIGR02485 393 ddlfaaGeimagnvlgkGylaGagltlaavfgriagreaa 432
                  + l++aGe+ ++ + g   la + l    v+g+ a + +a
  MMETSP1174-20130828|35720_1 356 PGLLVAGEVACTGLHGANRLASTSLLEGLVWGNAAAETCA 395
                  56999***********999999999999999999988776 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 4.5
    TIGR02485 384 vrlndarasddlfaaGeimagnvlgkGylaGaglt 418
                  vr+  +  + ++  a +  a++ l +G +a   lt
  MMETSP1174-20130828|35720_1 481 VRQKSTLDEAKVILADTLAAAEALSRGKVASNALT 515
                  56666666667777888888888888888877555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-05     0.003       1      43 [.       5      49 ..       5      62 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
    TIGR02352  1 vlviGgGviGlsvAveLakrghkvtllekd..evgsgAskaAaGm 43
                 vlviG G+ G + A++ a+ gh+vtll  +  +++s++ +a +G+
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTANddPLESNSFWAQGGI 49
                 79************************9876568999999999998 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.3e-05     0.011       2      33 ..       3      34 ..       2      51 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.3e-05
    TIGR02733  2 ksvvviGaGiaGltaaallakrGlevtlleaa 33
                 ++v+viG+Gi+G taa   a  G +vtll a+
  MMETSP1174-20130828|35720_1  3 STVLVIGSGIGGCTAALRSADLGHQVTLLTAN 34
                 5799************999*********9875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0049       1.1       2      30 ..       4      32 ..       3      39 .. 0.83
   2 ?    3.3   0.0     0.031       6.6     255     279 ..     345     369 ..     338     390 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0049
    TIGR01292  2 dviiiGaGpaGltaaiYaaranlktllie 30
                  v++iG+G +G+taa+ +a  + ++ l++
  MMETSP1174-20130828|35720_1  4 TVLVIGSGIGGCTAALRSADLGHQVTLLT 32
                 589*************9988887776665 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.031
    TIGR01292 255 ivvdeemrTsveGvfaaGDvrdksl 279
                  +v d + rTsv+G+  aG+v ++ l
  MMETSP1174-20130828|35720_1 345 VVSDLRGRTSVPGLLVAGEVACTGL 369
                  7778889*************98765 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00028      0.06       3      53 ..       5      55 ..       4      74 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00028
    TIGR01377  3 vivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesriirkayp 53
                 v+v+G+G+ G++aa + a  g++v Ll   d p +  s   +  ii ka  
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTANDDPLESNSFWAQGGIIYKAED 55
                 79**************************99999999999999999998855 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00025     0.055       5      47 ..       5      48 ..       2      53 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00025
    TIGR01438  5 liviGgGsGGlaaakeaaklgakvllldfv.kptpqGtkwGiGG 47
                 ++viG+G GG +aa ++a+lg +v ll +  +p      w  GG
  MMETSP1174-20130828|35720_1  5 VLVIGSGIGGCTAALRSADLGHQVTLLTANdDPLESNSFWAQGG 48
                 589**********************9987525777777788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.74u 0.20s 00:00:00.94 Elapsed: 00:00:00.51
# Mc/sec: 1451.88
//
Query:       MMETSP1174-20130828|35722_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.59
# Mc/sec: 615.20
//
Query:       MMETSP1174-20130828|35723_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-07   26.8   0.0    1.6e-06   26.1   0.0    1.3  1  TIGR00229 sensory_box: PAS domain S-box protein
    3.1e-05   20.5   0.0    3.7e-05   20.2   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     8e-10   1.6e-06      19      76 ..     114     171 ..     104     180 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 8e-10
    TIGR00229  19 ivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerep 76 
                    + +  +i++vN a+ ++ GY++ee +G+++++   pe ++e++ +++ ++ + ++  
  MMETSP1174-20130828|35723_1 114 TEAKHPFRIVHVNSAWTRLCGYTQEESLGKSLNIlQGPETEIEQLSKLQAQIEQ-QNAA 171
                  55666789**************************55555566666555555444.4444 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.8e-08   3.7e-05      19      83 ..     113     179 ..      98     181 .] 0.88

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.8e-08
    TIGR02938  19 itdlka..nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrr 83 
                  it+ k    i+++n+a++++ Gy++ee +Gk   +l    t  e   +l  ++ +++  + +l n  
  MMETSP1174-20130828|35723_1 113 ITEAKHpfRIVHVNSAWTRLCGYTQEESLGKSLNILQGPETEIEQLSKLQAQIEQQNAASTHLTNYS 179
                  5666642269**********************************************99999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 853.22
//
Query:       MMETSP1174-20130828|35728_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1174-20130828|35725_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 200.43
//
Query:       MMETSP1174-20130828|35729_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   15.5   0.0    0.00074   15.5   0.0    1.0  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.8e-07   0.00074     125     159 ..      12      48 ..       4      51 .] 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-07
    TIGR00870 125 tseftkgitalilAihkqnyeivklLl.ekgasve.a 159
                    +   g t+li+A +k n+e+v+ L+ e +a+v+ a
  MMETSP1174-20130828|35729_1  12 QARIDDGTTPLIIASQKGNLEMVRYLVgEARADVNqA 48 
                  5677789********************5668998855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1174-20130828|35726_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 640.63
//
Query:       MMETSP1174-20130828|35730_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.60
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|35733_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1174-20130828|35731_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.48
# Mc/sec: 159.49
//
Query:       MMETSP1174-20130828|35734_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 326.50
//
Query:       MMETSP1174-20130828|35736_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 413.00
//
Query:       MMETSP1174-20130828|35732_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.6e-202  668.5   0.0   9.1e-202  668.2   0.0    1.0  1  TIGR00190 thiC: thiamine biosynthesis protein ThiC


Domain annotation for each model (and alignments):
>> TIGR00190  thiC: thiamine biosynthesis protein ThiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  668.2   0.0  2.2e-205  9.1e-202       2     422 ..     160     583 ..     159     584 .. 0.99

  Alignments for each domain:
  == domain 1    score: 668.2 bits;  conditional E-value: 2.2e-205
    TIGR00190   2 tqleearkGviteemeavaekenleaelvrdevakGrvvipsninreesepvaiGenlktkvnaniGtsadlsdieeeveklliavkygadtvmdlstGgdldeirkaileavevPvGtvPiyqalekvkGavvdldedvffrviekqakdGvdfltihagvllesverlkrsgritGivsrGGailakwilenekenplyknfdelleilkeydvtlslgdglrpGsiadasdeaqlaelitlgelverarekdvqvmveGPGhvPldqikanvkkqkelckeaPfyvlGPlvtdiapGydhitsaiGaaiaglaGadllcyvtPkehlalPnkedvkeGviatkiaahaadlakgkkgarerdlelskarkefdWekqfelaldpekareirdetlpeeee....acsmcG.eycalkivkear 422
                  tq+ +a++Gviteeme+va +e +++e+vr eva+Gr++ipsn n++e ep++iG+++ +k+n+niG+sa  s+ieeevekl+++  +  dt+mdlstG+d++ +r++il+++++PvGtvPiyqalek++G+++dl+++ f++++++qa++Gvd+ tiha+vll+ v++++r  r+tGivsrGG+i ak +l+n++en+ y+++d++l+i+++ydv+ls+gdglrpGsi da+deaq+ael++ g+l+ ra+ekdvqvm eGPGhvPl++i  n+++q++ c+eaPfy+lGPl+td+apGydhitsaiGaa +g+ G+++lcyvtPkehl+lPn++dvk+G+ia+kiaahaadlakg++ a+e d++lskar+ef+W++qf+laldp +ar ++detl+ e++    +csmcG ++c++ i++++r
  MMETSP1174-20130828|35732_1 160 TQMYYAKQGVITEEMEFVALREGMDPEFVRSEVARGRAIIPSNKNHQELEPMIIGRKFAVKINSNIGNSAIASSIEEEVEKLQWSALWYGDTLMDLSTGRDIHMTREWILRNAPMPVGTVPIYQALEKCDGIAEDLTWELFRETLIEQAEQGVDYWTIHAAVLLRFVPMTAR--RMTGIVSRGGSIHAKICLTNHQENFAYEHWDDILDICRQYDVSLSIGDGLRPGSIYDANDEAQFAELKVQGDLTLRAWEKDVQVMNEGPGHVPLHKIPVNMRNQLDWCHEAPFYTLGPLTTDVAPGYDHITSAIGAANIGALGCAMLCYVTPKEHLGLPNRDDVKQGLIAYKIAAHAADLAKGHPRAQEWDDALSKARFEFRWNDQFNLALDPVTARSYHDETLSSESSksahFCSMCGpKFCSMSITEDVR 583
                  9***************************************************************************************************************************************************************************..********************************************************************************************************************************************************************************************************************************998877899***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 1821.45
//
Query:       MMETSP1174-20130828|35735_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       309  (0.0753291); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 766.11
//
Query:       MMETSP1174-20130828|35737_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 463.96
//
Query:       MMETSP1174-20130828|35740_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1174-20130828|35743_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1174-20130828|35742_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 715.79
//
Query:       MMETSP1174-20130828|35741_1  [L=885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00096   15.9   0.0      0.031   10.9   0.0    2.1  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0011   15.2   0.0     0.0016   14.7   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0067   12.8   0.0      0.011   12.1   0.0    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   2.3e-05     0.031       2      45 ..     162     208 ..     161     210 .. 0.82
   2 !    2.7   0.0     0.007       9.6     153     171 ..     314     332 ..     279     369 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.3e-05
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaek....akspafdnR 45 
                  i+I+GgG+vG+ + ++La  +  +v+ ve+++++k    +++ +f+nR
  MMETSP1174-20130828|35741_1 162 ILIAGGGPVGMRMGIELALGG-HSVTQVEKRREKKvgdeWETLGFTNR 208
                  89****************555.9*******999886666555566666 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.007
    TIGR01988 153 eakLlvgADGanSkvrqaa 171
                  e ++l+g+DG +S+vr++ 
  MMETSP1174-20130828|35741_1 314 EYDVLIGCDGPRSTVRDMN 332
                  5689************853 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-06    0.0016     378     413 ..     158     193 ..     141     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-06
    TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereee 413
                  ++ ++l++GgGP G++  ++ a  Gh+vt +e+ +e
  MMETSP1174-20130828|35741_1 158 VPMRILIAGGGPVGMRMGIELALGGHSVTQVEKRRE 193
                  5679***************************97654 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   7.7e-06     0.011     367     403 ..     154     190 ..     145     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.7e-06
    TIGR03996 367 eraatpgdvlvvGGGpaGleaarvlavrGhrvtlaea 403
                  ++  +p  +l+ GGGp G+     la+ Gh+vt +e+
  MMETSP1174-20130828|35741_1 154 NEGIVPMRILIAGGGPVGMRMGIELALGGHSVTQVEK 190
                  4556899***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 2383.88
//
Query:       MMETSP1174-20130828|35744_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1197.00
//
Query:       MMETSP1174-20130828|35749_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 205.32
//
Query:       MMETSP1174-20130828|35751_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 290.38
//
Query:       MMETSP1174-20130828|35750_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 827.13
//
Query:       MMETSP1174-20130828|35748_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 2276.81
//
Query:       MMETSP1174-20130828|35756_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.7   0.0      0.028   11.1   0.0    1.2  1  TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family


Domain annotation for each model (and alignments):
>> TIGR04063  stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.7e-06     0.028     266     299 ..     144     177 ..     130     185 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.7e-06
    TIGR04063 266 lgladrvvftGrvpheeveryydlidvlvyprks 299
                   + +++v + Gr +h +v +y d i+++v pr++
  MMETSP1174-20130828|35756_1 144 IPYNKSVDYIGRFKHTTVGNYTDTINIIVAPRTT 177
                  577899**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 947.92
//
Query:       MMETSP1174-20130828|35755_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1085.72
//
Query:       MMETSP1174-20130828|35758_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|35753_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-107  356.6   7.6   3.5e-107  356.4   5.2    1.0  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    5.1e-15   51.1   8.5    6.5e-15   50.8   5.9    1.1  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
      0.001   15.9   1.0     0.0016   15.3   0.2    1.7  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.4   5.2  2.5e-110  3.5e-107       1     406 [.      49     466 ..      49     467 .. 0.91

  Alignments for each domain:
  == domain 1    score: 356.4 bits;  conditional E-value: 2.5e-110
    TIGR03150   1 rrvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiage..vkdfdpeeyldkkearrldrfiqyalaaakealedagleleeedaervgvivgsGiGGletieeqakkl.......kekgprr...vsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdagl..kpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkareakievalsnsfGFGGtnaslvl 406
                  +rvvvtG+G+ + lgn+ve++ e+l ++ksgik  +k+    l+++i g+  +++ d ++++d+k +r + + ++ya +a ++a+e++gl+ ee ++ r+g i+g G   l  ++e+ +k+       + +g ++   v P+ + +++   +++ ++ ++ ++g+++++++AC+tg+h+ig+a++ i+ g+ d+  ag+ ea   +++ a F a+ alst +nd+pe+asr fdk rdGFv++ G+g++vlEelehAk+RgAkiyae+vGyg++aD y + ap+  g g + +m  a+ +a+     +evdyin+Hgtstp+gd+ E+ aik+vf++  ++ +v stKs  GH LGaaG  ea++++l ++++++ +  n+++  +e +   + ++ +e  ++ ++snsfGFGGtn +l++
  MMETSP1174-20130828|35753_1  49 NRVVVTGMGITSCLGNTVEDVTESLREAKSGIKYKEKYAELGLRSRICGRpdLTEDDFKALIDRKAMRFMGDNAKYAFVAMQRAVESSGLTPEEYQTPRTGAILGQGGTSLIDVTESIQKVidgtealTAEGFNKyrgVGPYRVTKTMGSTVSAVLTTMFKIQGISYSISSACSTGAHCIGTAMEQIQLGKQDICFAGAGEAEDWAFT-AMFDAMGALSTqYNDSPETASRAFDKTRDGFVIAGGGGIVVLEELEHAKSRGAKIYAELVGYGANADGYDMVAPS--GVGGEACMGIAIGMANSigGEKEVDYINTHGTSTPIGDAKELGAIKNVFDKLGYQPNVGSTKSLSGHALGAAGVHEAIYCLLMMDNDFLAESANINDLVDEAEGMNILTSRKEGPVNRVMSNSFGFGGTNCCLIF 466
                  69*********************************************9963367889999*********************************************99776655555444331221111677776655699*************************************************************9877764.89*********99***********************************************************998..66677777777777664237899***************************************************************************999997777788999*********************9 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   5.9   4.7e-18   6.5e-15     180     462 ..     195     469 ..     175     471 .] 0.85

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 4.7e-18
    TIGR02813 180 slGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpafttn.....e.diqpfdidskGmmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpeGqakalkrayddaGf..apktvGlieahGtGtaaGdvaefsGlssvfsqdndqkqhialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglprraGissfGfGGtnfhlvleey 462
                  ++G  +s  ++  f + G+   + +ac+     +  a+ ++  g+ ++  +G   +++  f  m f    a++t+     e   + fd    G +i  G G+v l  le a+  G +iya + G Ga +dG    + ap   G    +  a   a      k v  i++hGt t  Gd+ e++ +++vf +   q     +Gs ks  Gh+  +aG    i   l +    l  + n+++       e   + +        +r++g   r    sfGfGGtn  l++++y
  MMETSP1174-20130828|35753_1 195 TMGSTVSAVLTTMFKIQGISYSISSACSTGAHCIGTAMEQIQLGKQDICFAGAGEAEDWAFTAM-FDAMGALSTQyndspEtASRAFDKTRDGFVIAGGGGIVVLEELEHAKSRGAKIYAELVGYGANADGY--DMVAPSGVGGEACMGIAIGMANSigGEKEVDYINTHGTSTPIGDAKELGAIKNVFDKLGYQP---NVGSTKSLSGHALGAAGVHEAIYCLLMMDNDFLAESANINDL----VDEAEGMNIL------TSRKEGPVNRVMSNSFGFGGTNCCLIFDKY 469
                  57999999999****************************************9888887777666.566666666421222314688*********************************************5..68899998888777777765543115799**************************8877665...69********************************99999653....3334444433......3689999999999*************9999 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.1e-06    0.0016      64     112 ..     202     250 ..     191     284 .. 0.85
   2 ?   -3.6   0.0      0.64   8.8e+02     245     274 ..     291     320 ..     288     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-06
    TIGR01930  64 aalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEs 112
                  a+l++ ++ +  +++++ +C++g + + +a+++i+ G++d++ aG  E 
  MMETSP1174-20130828|35753_1 202 AVLTTMFKIQGISYSISSACSTGAHCIGTAMEQIQLGKQDICFAGAGEA 250
                  67777788888899******************************98775 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.64
    TIGR01930 245 DGAaalllmseevakelgltplarivsaav 274
                   G ++++l + e ak+ g ++ a++v+++ 
  MMETSP1174-20130828|35753_1 291 GGGGIVVLEELEHAKSRGAKIYAELVGYGA 320
                  577889999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 1381.49
//
Query:       MMETSP1174-20130828|35761_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1174-20130828|35760_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 374.68
//
Query:       MMETSP1174-20130828|35757_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-108  359.3   0.2   6.6e-108  359.1   0.2    1.1  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.1   0.2  1.6e-111  6.6e-108       1     339 [.      45     402 ..      45     417 .] 0.91

  Alignments for each domain:
  == domain 1    score: 359.1 bits;  conditional E-value: 1.6e-111
    TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikkeevklkkgekvilttdekkeegseekvsvdyks..............lvkdvkeGdkilvdDGkislkVveveedk.vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqg..vdlvaaSFvrkaedvkevrevleekg...akdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreag.kpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekale 339
                  r tkIvaT+GPa+ ++e++ k+++aGv++ RlN SH      ++v+ ++r+ a++++  + +l D++Gp+ Rvge++++++k++ g+ + l   +  +e ++++v +   +              l+  +++G ++l+dDG+++++V+ev + + v+v+v  gg++k +kgvn+p++e++  al++kD++d ++ ++ +  v+++ +SF +k +d++e+ +v+++ +   +k+ ki  KiE++++++nideI+  s ++mvARGDLGve+    vp++Qk li+++++a+  pvi+ATqm++Smi+np+PTRAE sDvanA +dG+davMLSgE+a+G+YP e+V++m++i keae+a +
  MMETSP1174-20130828|35757_1  45 RDTKIVATLGPASWTEEMIPKMIEAGVDIFRLNCSHRRGGVFEEVYPRIRRFASEMNVSIEVLGDLQGPKFRVGELADGPIKINDGDVLELGIAA--NEEDKTRVGTAAGGlaritmfetteqlaLMGGLEVGISVLIDDGLVEVQVTEVVSPTeVMVKVIHGGMVKARKGVNVPDLEIDCAALTAKDIEDAEYLLQLDppVEYICVSFAQKGQDLQELIDVMDRLNiapEKRPKICPKIEKPQALSNIDEIMALSGALMVARGDLGVELGHARVPFAQKLLIAAAKKAKlYPVICATQMMESMIENPVPTRAECSDVANAYFDGADAVMLSGEAATGNYPTETVAMMSTIVKEAEAAAK 402
                  67**************************************************************************************9999654..455555555555445556656666777889999*******************988767**************************************98766555*********************999874446899****************************************************9987369***************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.86
# Mc/sec: 639.99
//
Query:       MMETSP1174-20130828|35765_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 249.94
//
Query:       MMETSP1174-20130828|35763_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1591.41
//
Query:       MMETSP1174-20130828|35767_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 605.33
//
Query:       MMETSP1174-20130828|35764_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-49  164.7  40.9    1.3e-48  163.9  28.3    1.4  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    6.2e-11   39.8  33.0    4.3e-07   27.1   7.4    2.4  2  TIGR02119 panF: sodium/pantothenate symporter
  ------ inclusion threshold ------
       0.12    8.9  39.5     0.0065   13.1  20.8    2.7  2  TIGR02121 Na_Pro_sym: sodium/proline symporter


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9  28.3   9.5e-52   1.3e-48       1     411 []      69     503 ..      69     503 .. 0.87

  Alignments for each domain:
  == domain 1    score: 163.9 bits;  conditional E-value: 9.5e-52
    TIGR00813   1 yflagrslgglvvaaslvasnisasqllGlpgeayasGlai.iflelaalvllivlgllfvpvyikag.vltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGldlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaaptvvs.......................vddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllv.vellppglaglfla.vllaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaiv......vaaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgliiG 411
                  + +agr ++  ++a  +v+ + ++++ll ++  a+  G+++ ++++ +a v+++++g+l ++ + +a+ ++t+ e+++ R+g   ++i  + + +l++++++++ + +ga+  + ++G++++++ +l+ +++i Yt+ GGlkA++ + +++++i+++ ++++++ + ++v   + ++++++  ++  ++                       v+d+++ ++ ++ s   + +++++li + ++++++dq+++q ++aak a++ k ++l ++v++ +p  la+ +Gl a+al        ++++    + ++p++v v l++ g  g ++a +l++A++St s+  +++s+++++D+Y+ +i+++a + + + ++  ++++ ++ ++i+      +  a++   l++v++ +g + ++++ ++   l wk++na GA++g  iG
  MMETSP1174-20130828|35764_1  69 FNTAGRTVKVGLTASVIVSQWTWSATLLQSSNVAWGFGVSGpFWYASGATVQILLFGILSIQLKARAKkAHTVCEMVKVRWGT-TAHITFLYFCFLANTIVTAMLILGGAATVNALTGMNVIAAGFLIPVFVIPYTMAGGLKATFMASYVHTAIIFIILVVFMYTVYIKVYSSDIIYDMMEAVTDMSTDeceaafyadgetfyeagkyacgpVADNFHGSYLTMLSLDGIRFGIINLIGN-FGTVFVDQSYWQSAIAAKPAAAHKGYMLGGLVWFTIPFTLATSMGLTALALQL-----PITNIE-SGQGLVPAAVaVHLFG-GSGGWMIAiMLFMAIISTGSAEAIAVSSLVSYDIYRTYINPKATGAQILRVSKYAIFISGAFMGILsallqaIGEAEPALGLGWVYQFMGNAIGSAVVPLTYLLLWKDANATGAIAGAFIG 503
                  679***********************************7762667889***************999888**************.88888888889999************************************************************************987777777777766333367899**********************************************.9**************************************************95.....344454.4444555554156666.556666661569********************************666666666566555666666673333344445555699***********999999999**************9988 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  10.0   1.6e-07   0.00021      28     218 ..      61     252 ..      38     266 .. 0.72
   2 !   27.1   7.4   3.1e-10   4.3e-07     266     439 ..     327     516 ..     301     549 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.6e-07
    TIGR02119  28 tdsflqeyf.lGnrslgGfvlamtlvatyvsassfigGpGiayklGlGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllv.fllsaivaqfiGGarllesltGlsyltalllfslsvliyvliGGfravvltdalqgivmllgtiilliav...ikaggGvekiveklke 218
                  + + ++e f   +r +   + a  +v+ ++ +++++    +a+  G+   +  +   ++  l +g+l  +  + ar  +a t+ +++k r+ + + + +  +++l   +++a+    +GGa  +++ltG++  +a +l  + v+ y++ GG++a+ ++  +++ ++++  ++++ +v   +++++ + +++e +++
  MMETSP1174-20130828|35764_1  61 GTKITSEQFnTAGRTVKVGLTASVIVSQWTWSATLLQSSNVAWGFGVSGPFWYASGATVQILLFGILSIQ--LKARAKKAHTVCEMVKVRWGTTAHITFLYFCFLAnTIVTAML--ILGGAATVNALTGMNVIAAGFLIPVFVIPYTMAGGLKATFMASYVHTAIIFIILVVFMYTVyikVYSSDIIYDMMEAVTD 252
                  4445555442456777766777778888888888888888888888876666666666777777887654..5699999************98876666666655515566665..58*****************************************9999988887776665542223444555555555555 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 3.1e-10
    TIGR02119 266 kalhraliigtivvgilml....gmhlvGvlgravlpdlkvsdkvipllalkvlppilaGiflaapl.aaimstvdsllllssstlikdlylnylekeakekkvkkisllitll....lgllv.llaal...kppdliiwlnlfalGGleaaflwplvlGlywekanatGalasilv....Gvasylvles 439
                   a h++ ++g +v  ++ +    +m l+    +  + +++ ++ ++p  +   l +   G ++a  l  ai+st  +  + +ss +  d+y +y++ +a+  ++ ++s +  ++    +g+l  ll a+   +p   + w+  f +G      ++pl   l w+ anatGa+a  ++    G++++l+ +s
  MMETSP1174-20130828|35764_1 327 AAAHKGYMLGGLVWFTIPFtlatSMGLTALALQLPITNIESGQGLVPAAVAVHLFGGSGGWMIAIMLfMAIISTGSAEAIAVSSLVSYDIYRTYINPKATGAQILRVSKYAIFIsgafMGILSaLLQAIgeaEPALGLGWVYQF-MGNAIGSAVVPLTYLLLWKDANATGAIAGAFIgqilGLSCWLIHAS 516
                  4678888888887665544111157777666677799***********************9999875379******************************99998888766655111133332122232222566668899887.6777777899******************877611115677776554 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  20.8   4.7e-06    0.0065     131     435 ..     163     508 ..     131     540 .. 0.76
   2 ?   -3.0   0.8      0.35   4.7e+02      55      83 ..     614     642 ..     612     654 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.7e-06
    TIGR02121 131 vfftlytssGlvaGgklfesafGldyklalligalivviytflGGflavswtdlvqgllmlvalvlvPivallklgglseileaveaid..................................pekldllkgas.viaiislla.WGlGyfGqPhiivrfmaiksakelkkarligisWmilsllGavlvglvGiayvekvpgvevadk.ekifillskvlfnPliaGlllaail.aaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlv....vaii.aivlalnpdssvlelvsyaWaGfGaafgpvvl...lslywkrltragalagmvigavtvi 435
                  +  t+ t+  +++G+  +++  G++   a ++  + v+ yt+ GG  a  ++  v ++++++ lv+    ++ k+     i++++ea+                                    ++l++l+      +ii l++ +G  +  q +     +a+k a   k   l g+ W  + +  a+ +gl+ +a       ++++     +   ++  lf    +G ++a +l  ai+st s+  +  ss +  d+y++ ++ +a+  ++++v++ ++++    + i+ a++ a+ + +  l+l ++ +  +G a g++v+   + l+wk+ + +ga+ag  ig +  +
  MMETSP1174-20130828|35764_1 163 LANTIVTAMLILGGAATVNALTGMNVIAAGFLIPVFVIPYTMAGGLKATFMASYVHTAIIFIILVVFMYTVYIKVYSSDIIYDMMEAVTdmstdeceaafyadgetfyeagkyacgpvadnfhGSYLTMLSLDGiRFGIINLIGnFGTVFVDQSYWQS-AIAAKPAAAHKGYMLGGLVWFTIPFTLATSMGLTALALQLPI--TNIESGqGLVPAAVAVHLFGGS-GGWMIAIMLfMAIISTGSAEAIAVSSLVSYDIYRTYINPKATGAQILRVSKYAIFIsgafMGILsALLQAIGEAEPALGL-GWVYQFMGNAIGSAVVpltYLLLWKDANATGAIAGAFIGQILGL 508
                  3347788888999***************************************************9998888888776666666666555566888**************9999999988877666666665433234666665424555555554433.233344433344444589***************999986655..5555542667778888889876.66666655438*****************************************9998322223331555577888888887.77777888888887754335689***************998654 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.35
    TIGR02121  55 WlllGlPGalyvtGlselwiaiGlliGay 83 
                  W ll +P  +++    ++wi + l+ G  
  MMETSP1174-20130828|35764_1 614 WPLLSIPAGVFTKDYFSFWIFVALAWGFL 642
                  88999***************999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.71
# Mc/sec: 1323.61
//
Query:       MMETSP1174-20130828|35768_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 913.50
//
Query:       MMETSP1174-20130828|35766_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1059.58
//
Query:       MMETSP1174-20130828|35772_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1174-20130828|35774_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 868.93
//
Query:       MMETSP1174-20130828|35776_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   18.8   0.0     0.0054   14.8   0.0    2.3  1  TIGR00004 TIGR00004: putative endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-06    0.0054      16     123 ..      59     191 ..      49     193 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-06
    TIGR00004  16 YsqavkvgnllfvsGqip..ldpetge....lveeg..dve...eqaeqvlenlkaileaa.glsledvvkvtvf...lkdlndFae....vn...evyakyfk...eekpaRsavevaaLPkdvkvEieaia 123
                  Y  a + g+ll++sG +p  ld + +e    l ++g  +v    e a+ +  nl a ++a+ + +l++vvkv  +   ++  +dF +    vn   +v+ + f      + aRsa++  aLP +  vE+eai+
  MMETSP1174-20130828|35776_1  59 YQPASRDGDLLYLSGHLPggLDGSLMEgrltLEGGGglSVDegyEAARWAGLNLVATMKASlDGDLNRVVKVIKLfgvVQCSEDFHDqhlvVNgasDVMCEIFGdevGGMHARSAIGTNALPLGIPVEVEAIV 191
                  666666666666666665333333222111122222112221113455555677777777646788888887544122333345543222255444688888884444578********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 753.11
//
Query:       MMETSP1174-20130828|35778_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1354.46
//
Query:       MMETSP1174-20130828|35782_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|35777_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   24.7   0.1    4.9e-06   23.7   0.1    1.4  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    7.9e-06   22.7   0.0    1.4e-05   21.8   0.0    1.3  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    0.00017   17.9   0.0    0.00025   17.3   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    0.00059   16.2   0.0     0.0011   15.3   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
     0.0019   14.8   0.1     0.0045   13.5   0.1    1.5  1  TIGR03689 pup_AAA: proteasome ATPase
     0.0029   14.5   0.0     0.0049   13.8   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0031   14.9   0.0     0.0059   14.0   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0088   13.4   0.0      0.041   11.3   0.0    2.0  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
  ------ inclusion threshold ------
      0.011   12.1   0.0      0.011   12.1   0.0    1.5  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
       0.02   12.6   0.0      0.042   11.6   0.0    1.5  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.2e-08   4.9e-06     157     187 ..     303     333 ..     289     341 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.2e-08
    TIGR01242 157 kGvllyGppGtGktllakavaeetnatfirv 187
                   G+ll+GppGtGkt l ka+a++t+ ++i+v
  MMETSP1174-20130828|35777_1 303 LGLLLHGPPGTGKTSLIKALAQHTQRSIINV 333
                  49***********************999987 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.5e-08   1.4e-05      64     118 ..     276     331 ..     255     337 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.5e-08
    TIGR01241  64 akeelveiv.dfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpff 118
                  +k+ l++++ +f k+  k++  G     G+ll GpPGtGkt l ka+a   +++ +
  MMETSP1174-20130828|35777_1 276 EKDSLINVLgHFQKKTGKYAIKGYPHKLGLLLHGPPGTGKTSLIKALAQHTQRSII 331
                  455555554289999********9999*********************98877765 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.1e-07   0.00025     489     518 ..     304     333 ..     286     340 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 6.1e-07
    TIGR01243 489 gvllfgppgtgktllakavatesganfiav 518
                  g+ll+gppgtgkt l ka+a+ ++  +i v
  MMETSP1174-20130828|35777_1 304 GLLLHGPPGTGKTSLIKALAQHTQRSIINV 333
                  667777777777777777777666666655 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-06    0.0011     356     386 ..     305     335 ..     295     344 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.8e-06
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlsl 386
                  l l+GPPG GKtSl k++A+ ++r  + + l
  MMETSP1174-20130828|35777_1 305 LLLHGPPGTGKTSLIKALAQHTQRSIINVPL 335
                  789*********************9987765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.1e-05    0.0045     218     239 ..     304     325 ..     290     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
    TIGR03689 218 GvllyGPPGcGktliakavans 239
                  G+ll+GPPG+Gkt + ka+a+ 
  MMETSP1174-20130828|35777_1 304 GLLLHGPPGTGKTSLIKALAQH 325
                  9*****************9975 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.2e-05    0.0049      33      74 ..     305     346 ..     297     355 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalekpgDlaa 74 
                  +ll GPPG Gkt+l k +a+  + ++  +    +  +++l+ 
  MMETSP1174-20130828|35777_1 305 LLLHGPPGTGKTSLIKALAQHTQRSIINVPLARIGTNQELMD 346
                  79******************9998886666556666666555 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05    0.0059      24      52 ..     305     333 ..     284     359 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvll 52 
                  + l GP GtGktsl  ++a++ +r ++ +
  MMETSP1174-20130828|35777_1 305 LLLHGPPGTGKTSLIKALAQHTQRSIINV 333
                  5689********************99865 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.57   2.4e+02       5      41 ..     202     236 ..     199     245 .. 0.78
   2 !   11.3   0.0   9.9e-05     0.041      35      78 ..     299     339 ..     260     359 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.57
    TIGR03420   5 dvqlkedatldnFlagenaellaalrelaeakaerll 41 
                   ++ k+++++d+F++++ +  l +lr+l  ++++r l
  MMETSP1174-20130828|35777_1 202 TFRSKSKESIDSFIETAYQWYLGELRKL--EDNSRYL 236
                  56788999******************99..4444444 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 9.9e-05
    TIGR03420  35 akaerllylwGesgsGksHLLqAacaaaeeagksaiylplkela 78 
                    ++  l l G++g+Gk+ L++A++++++   +s+i +pl+++ 
  MMETSP1174-20130828|35777_1 299 YPHKLGLLLHGPPGTGKTSLIKALAQHTQ---RSIINVPLARIG 339
                  445566899***************99876...567777777754 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05     0.011     315     334 ..     305     324 ..     295     357 .. 0.92
   2 ?   -4.1   0.4       2.3   9.3e+02     218     244 ..     441     467 ..     414     506 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
    TIGR03922 315 lllaGPPGtGkttiArvvak 334
                  lll GPPGtGkt++ +++a+
  MMETSP1174-20130828|35777_1 305 LLLHGPPGTGKTSLIKALAQ 324
                  799**************997 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.3
    TIGR03922 218 vkeALadpsyrlvltdaekieaRtDpW 244
                  + e L  ++++l + da+  +aR  + 
  MMETSP1174-20130828|35777_1 441 ASELLCSTTMNLNIPDAQDEKAREAKA 467
                  345566666666666666666654433 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001     0.042      11      46 ..     291     326 ..     282     338 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
    TIGR00150  11 lgkklakaldlatvvlLkGdlGaGKttlvkgllkgl 46 
                   gk  +k  + +  +lL+G  G+GKt+l+k+l+++ 
  MMETSP1174-20130828|35777_1 291 TGKYAIKGYPHKLGLLLHGPPGTGKTSLIKALAQHT 326
                  566666777888889******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.62
# Mc/sec: 1226.22
//
Query:       MMETSP1174-20130828|35781_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1695.55
//
Query:       MMETSP1174-20130828|35788_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1174-20130828|35786_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-31  106.0   0.1    6.6e-31  105.6   0.1    1.0  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
      6e-27   92.6   0.0    7.4e-27   92.3   0.0    1.0  1  TIGR01929 menB: naphthoate synthase
    2.4e-21   74.0   1.5      3e-21   73.7   1.1    1.1  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    2.4e-21   74.0   0.0    3.2e-21   73.6   0.0    1.0  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    3.2e-19   66.6   0.1    3.9e-19   66.3   0.1    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    2.4e-18   63.4   0.3    2.8e-18   63.2   0.2    1.0  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    2.6e-15   53.5   0.8    3.3e-15   53.2   0.6    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    2.2e-12   44.6   0.0    2.8e-12   44.2   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    6.9e-06   22.9   0.3    8.4e-06   22.6   0.2    1.1  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.1   1.5e-33   6.6e-31       8     252 ..      59     303 ..      55     306 .. 0.90

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 1.5e-33
    TIGR02280   8 gvlrltlnrpdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaae.sakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtq.ldlerdlqrelGrsadyaeGvaafldkrepe 252
                  g++ l ++ p+  ns++ +m  el+  le ++ d+ vr+++l+  G  fc+G +l+e+    +    l +t+ +  + +++ + +l  pv+++v G+a+ aG ++  ++d+ +aa+  + f    + +Gl   +  + +l r + +  a+ + l+ge + ae+a ++Gl+ +vv d  l+++  al +++a++ + ++ + k  ++  +  +l +        + r++ + ad +eG++a+l+kr+p 
  MMETSP1174-20130828|35786_1  59 GLAVLVMDDPKSRNSLSLNMLGELRMHLEDIQADEsVRCVVLAANGPVFCSGHNLKELMSMDS-EEGL-RTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKrGSAFSTPGVDIGLFCSTP-SVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQSHTLALGKEIASKSAAAIDIGKGIVREHKDLNLGDAyTCASAAMVRNMSQRADAREGISALLEKRSPV 303
                  67789999*************************999********************9976544.4445.56777778999*******************************99875167899999*****98765.678999999999**********************************************************9999888655055678899********************996 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   1.6e-29   7.4e-27      12     256 ..      59     304 ..      51     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 1.6e-29
    TIGR01929  12 aiakiaidrpkvrnafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrl..nvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltias.enarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadldGqaGlqelaGeatllfylte..eaqeGrdaflekrepdf 256
                  ++a +++d pk rn++  +   el   l+d + d+++  v+l+ +G   fcsG +  ++  +    e+G   +  +  +v ++i  l  pvia v+G a   G  +   cdl++a+   + f   g ++G f +   s  l r++  k a  + +++    ae+a + Glv  vv+  +l+++t+ + +ei +ks  a+ + k  +  ++d   G      +a+++  +++  +a+eG +a+lekr+p +
  MMETSP1174-20130828|35786_1  59 GLAVLVMDDPKSRNSLSLNMLGELRMHLEDIQADESVRCVVLAANGP-VFCSGHN--LKELMSMDSEEGLRTIfnECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAkRGSAFSTPGVDIGLFCST-PSVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQSHTLALGKEIASKSAAAIDIGKGIVREHKDLNLGDAYTCASAAMVRNMSQraDAREGISALLEKRSPVW 304
                  5677899************************************9996.7****76..556666677777655433689**************************************55689***********875.678899***************************************************************************************8633689***********976 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   1.1   6.6e-24     3e-21      16     249 ..      65     305 ..      54     307 .. 0.89

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 6.6e-24
    TIGR03189  16 larpka.nivdaamiaalraalgealeaaalravlldaegphfsfgasveehmpdqcaamlkslh....klviemldspvpilvavrgqclggglevaaagnllfaap.daklgqpeiklgvfapaascllpervgkvaaedllysgrsidgaegariglvdavaedpe.aaalayfdehlaklsasslrfavraarlgvvervkakiaevealyleelmathdaveglnaflekrpaawe 249
                  +  pk+ n +  +m+  lr  l + + + ++r+v+l a+gp f  g  ++e m  +  + l+++     ++++++++   p++ +v+g     g +++a+ +l  aa  ++ +  p + +g+f+ + s  l  ++++ aa  +l +g +i ++++  +glv+ v+ d + ++    + +++a +sa+++ +     r      +    +   a  + ++    da eg+ a+lekr+  we
  MMETSP1174-20130828|35786_1  65 MDDPKSrNSLSLNMLGELRMHLEDIQADESVRCVVLAANGPVFCSGHNLKELMSMDSEEGLRTIFnecsDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKrGSAFSTPGVDIGLFCSTPSVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDlQSHTLALGKEIASKSAAAIDIGKGIVREHKDLNLGDAYTCASAAMVRNMSQRADAREGISALLEKRSPVWE 305
                  5566653778899****************************************988877777665111157788999999***********************988753789*************************************************9999887734555668999************99999999999999999999999*************************8 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   7.1e-24   3.2e-21      10     252 ..      58     303 ..      53     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 7.1e-24
    TIGR03210  10 ngvatiiinraeklnafrgrtcdelikalkkagydreigvivlagagdkafctggdqst..hdgnydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasek.avlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvdtahqagiaglgmya..lklyydteesregvkalqekrkpe 252
                   g+a+++++ ++  n++  +   el   l++ + d  + ++vla  g   fc+g +        + +g  +i     ++ +ai ++  pvia vqg a   g  +v+ cdl++a+++ + +   g  +g          l r +  k a  +       +a++al++glv  vvp  +l++     ++ei  ks +a+ i k       +   g a  +  a  ++   + +++reg+ al ekr p 
  MMETSP1174-20130828|35786_1  58 PGLAVLVMDDPKSRNSLSLNMLGELRMHLEDIQADESVRCVVLAANG-PVFCSGHNLKElmSMDSEEGLRTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKRgSAFSTPGVDIGLFCSTPSV-ALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQSHTLALGKEIASKSAAAIDIGKGIVREHKDLNLGDAYTCASAamVRNMSQRADAREGISALLEKRSPV 303
                  58999**************************************9888.58****98654113445577778888999999*********************************998735799999999988766555.578999*********************************************************9988777777766655444331156778899*************996 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   8.5e-22   3.9e-19      15     203 ..      58     244 ..      48     281 .. 0.92

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 8.5e-22
    TIGR02437  15 dgiaelvfdapgsvnkldratlasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadkt.akiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkd 203
                   g+a lv+d p s n l  + l +l+  l+ ++a+ ++++++l+++  +f  G ++ e++++    ee l +  +e   v++ + +l  p +a+v+G a   G+++v ++d+ +a+k       p + +G++     +v l r i   +a+ ++ +G+   ae+al  glv  vv    l++ +l+l k+
  MMETSP1174-20130828|35786_1  58 PGLAVLVMDDPKSRNSLSLNMLGELRMHLEDIQADESVRCVVLAANGPVFCSGHNLKELMSM--DSEEGLRTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKRgSAFSTPGVDIGLFCS-TPSVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQSHTLALGKE 244
                  58899*****************************************************9985..67899*********************************************998625689*******9976.579*************************************999999888776554 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.2   6.1e-21   2.8e-18      22     200 ..      59     232 ..      43     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 6.1e-21
    TIGR02441  22 dvavvkidspnskvntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplG 200
                  ++av+ +d p s+ n+ls ++  e++  l++++++e+v+ +vl ++ p  f +G +++ l + ++ e   ++ +e+  +++ + + + p++a+++G     G ++  +c+  +a+k + + +++p v +Gl+  +  ++ l + +  +aa+ + ltG  i a++a  +Glv ++v p G
  MMETSP1174-20130828|35786_1  59 GLAVLVMDDPKSR-NSLSLNMLGELRMHLEDIQADESVRCVVLAANGP-VFCSGHNLKELMSMDSEEGLRTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAK-RGSAFSTPGVDIGLFCSTP-SVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVV-PDG 232
                  6899999***986.9************************999887777.7***************************************************************998.67889********998765.5778889999*************************998.444 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.6   7.1e-18   3.3e-15      10     191 ..      59     236 ..      49     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 7.1e-18
    TIGR02440  10 niailtidvpgeklntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilld 191
                  ++a+l +d p  + n+l  ++  +++  l+++++++++r +vl +     f +g +++ l +  + +  +++ ++  ++++ +  l  +v+a++ g     g ++  +c   v ++ + + +  p v++gl+  s  +  l r +    a++m+ltg  + a +al +glv +vvp   l  
  MMETSP1174-20130828|35786_1  59 GLAVLVMDDPKSR-NSLSLNMLGELRMHLEDIQADESVRCVVLAAN-GPVFCSGHNLKELMSMDSEEGLRTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKRG-SAFSTPGVDIGLFC-STPSVALVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQS 236
                  7899999999876.99***********************9988665.558*************************************************************9998876.56899******997.5567789***********************************876654 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0     6e-15   2.8e-12      39     212 ..      61     231 ..      53     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 6e-15
    TIGR03200  39 awiildnpkqynsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdl.akfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvpa 212
                  a +++d+pk  ns + +m+  + + +++  +d +v +vv++a g   fc+g n ke  +  +   +  r  ++   d+++ai++   pvi+ v+g+    g +i  ++dl+va    + f   g   g      +   l   i  + am    + e   a ka + g++ +vvp 
  MMETSP1174-20130828|35786_1  61 AVLVMDDPKSRNSLSLNMLGELRMHLEDIQADESVRCVVLAANGP-VFCSGHNLKELMSMDS--EEGLRTIFNECSDVMQAIVNLRTPVIASVQGLATAAGCQIVASCDLAVAAKRgSAFSTPGVDIGLFCSTPSVA-LVRQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPD 231
                  56789***********************************99985.8*********998755..467899999999************************************8765267999999999887777665.455688999**************************95 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   1.8e-08   8.4e-06      65     235 ..      93     254 ..      70     289 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.8e-08
    TIGR03222  65 pevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaelaaksdrpad 235
                    vr+vvl+ a+  vfc+G n+k l   +      +    ne  + + +a  + +   +a+v+G a+  G ++  +cd   ++  r sa s p v  ++++  t  ++ v   r++ +  a  +  + e +  ++a  + lv evv++  ++++  +  +e+a+ks  + d
  MMETSP1174-20130828|35786_1  93 ESVRCVVLA-ANGPVFCSGHNLKELMSMDSEE--GLRTIFNECSDVM-QAIVNLRTPVIASVQGLATAAGCQIVASCDL-AVAAKRGSAFSTPGVD-IGLFCSTPSVALV---RQIPHKAAMHMLLTGETIPAEKALSFGLVSEVVPDGDLQSHTLALGKEIASKSAAAID 254
                  468988886.6778********9776544333..3344558887765.567788999****************999996.56778999******98.4788888766555...9999999999999*************************************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 677.54
//
Query:       MMETSP1174-20130828|35793_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 253.83
//
Query:       MMETSP1174-20130828|35794_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1174-20130828|35792_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-86  286.7   0.0      8e-86  286.2   0.0    1.2  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.2   0.0     2e-89     8e-86      27     405 .]      90     481 .]      79     481 .] 0.82

  Alignments for each domain:
  == domain 1    score: 286.2 bits;  conditional E-value: 2e-89
    TIGR00120  27 lgliiserea.vaaavfttnkvraapvkvskevlkdkasikaivvnsgnanavtGeqGlkDakemarlvaeklgieeeevlv..astGviGrrldmekikkkiekvieelkessnssekvakailttDtvpkevavelelegkkvriggvakGaGmiaPnmatlLgFittdveieskalqkmLrkatdksFnqitvDGdtstnDtvlvlanga.setkaiteds.keaeklkeallavcqelakaiarDGeGatkllevqvkgakneedakviaraiagslLvktavfGaDpnWGRivaaiGys.gadv.dkeevsvilsdekeevvlvdngep..lefe.ees............eraeeilksdeieivvdlatGdeeataygCDLsydYvkinaeYtt 405
                  l+l++++ ++ +  a+fttn +  ap+kv +++l++k+ ++a++vn    n +    G++  ++ ++ va +l++e    +v   stGviG  l ++++ + + ++  +     +s+  +a+ai+ttD++pk  +++++  g   ri+g akGaGmi P +at+L +++tdvei+++ l++ L++a+d sFn++++D d+st Dtvl+++++   +  a +e++ +   ++++al++vcqela  ++r+GeG+  ++ev+v+ga ++  a+ +ar++++s L k av G+Dpn GR+vaa+G+  g++  d+  v   +s      ++++nge   l+ + e +            e  +   +++ +e++vdl++G+++a++ g DL+++Yv ina+Y++
  MMETSP1174-20130828|35792_1  90 LTLVVTDSPTeSWTAMFTTNAFPGAPIKVGRRRLAEKTALQAVLVNNKVSNVCA-AGGVEVSEHLCECVATELNLEGGASAVvpCSTGVIGWGLPVKEMVEALPTIELQR----DSALPAAEAIMTTDRYPKIRSSDVR--G-GGRITGFAKGAGMIEPHLATMLVYVLTDVEIDRADLHECLQRAVDSSFNCLSIDSDESTSDTVLAVSSNYvPRGTAAQENHaEFLTDFEAALTEVCQELADDVVRNGEGTSHVIEVSVSGAPDDLTAREVARTMVNSPLTKCAVAGNDPNVGRLVAAAGKYlGLHTpDPTAVGSRMSMRIGGHLIFANGEFcdLSADmE-VklvahmraaelgEDCDFPKHKNRVEVHVDLGSGEGKAVFLGSDLTHEYVSINADYRS 481
                  5566655433145789***********************************999.89******************9755444227**********999888887765443....356889************9888666..4.459************************************************************987765514545555655155689************************************************************************7665543255666666666566677777777633334431.234444322222222333345899********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 1715.86
//
Query:       MMETSP1174-20130828|35795_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-23   79.3   0.4    7.3e-22   75.6   0.0    2.4  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.7e-21   74.5   0.1    5.5e-21   72.9   0.0    1.9  2  TIGR00231 small_GTP: small GTP-binding protein domain
    4.7e-12   43.3   0.0    2.1e-07   28.0   0.0    2.3  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    3.9e-10   37.2   0.1    4.8e-08   30.3   0.0    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    6.3e-10   36.7   0.0    1.2e-09   35.8   0.0    1.4  1  TIGR00436 era: GTP-binding protein Era
    1.8e-08   31.6   0.1    4.8e-08   30.2   0.0    1.6  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.1e-08   31.5   1.0    0.00042   17.4   0.0    2.6  3  TIGR00092 TIGR00092: GTP-binding protein YchF
    3.2e-07   27.2   0.4    4.9e-07   26.6   0.0    1.4  2  TIGR00437 feoB: ferrous iron transport protein B
    2.2e-05   21.8   2.3    3.8e-05   21.0   0.0    2.4  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    5.5e-05   20.0   0.4    0.00028   17.6   0.1    2.0  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0067   13.4   0.2      0.014   12.4   0.0    1.5  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.035   11.6   0.0    1.8  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   2.1e-24   7.3e-22     160     283 ..      38     157 ..      35     163 .. 0.93
   2 ?    1.0   0.0      0.11        36     278     326 ..     221     263 ..     163     266 .. 0.57

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 2.1e-24
    TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnki 283
                  v+l+G+p++GkStlls+++++k+  a+Y+FtTl+   G + ++  +++ l D+Pg+iega++g+g G+e +     + ++l+++d  +e   ++ ++ e++e+eL++   +L++ p  vv++k 
  MMETSP1174-20130828|35795_1  38 VALIGFPSVGKSTLLSTLTDTKSDAAAYEFTTLTCIPGNLMYNG-TKIQLLDLPGIIEGAAHGKGRGKEVIAVARTADLVLMVLDGGKE---QVNRHREILENELETVGLRLNKTPPNVVVTKK 157
                  99**************************************9999.9************************9877777888999999988...7889999***************9999988885 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
    TIGR02729 278 vvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkklle 326
                   + nkid+++ ee+++l++e       + l isa  + +l+ ll+k+++
  MMETSP1174-20130828|35795_1 221 YAYNKIDMITIEEVDKLARE------PHSLVISAHMELNLDYLLSKMWD 263
                  34566666554433333322......24456777777777777776665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   1.6e-23   5.5e-21       3     124 ..      35     152 ..      33     171 .. 0.90
   2 ?   -2.0   0.0       1.7   5.7e+02     112     127 ..     216     232 ..     197     255 .. 0.67

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 1.6e-23
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldv.eeglekqtkeiiheakkkgvpiilvvnKiDl 124
                  + +++++G+++vGKstLl+ l+++k s  ++++++t + ++   +++G  +k++llD++G ++ +a  + + +ev ++++++d+v++vld  +e ++++++++++e++   v+++l+ ++++ 
  MMETSP1174-20130828|35795_1  35 DGRVALIGFPSVGKSTLLSTLTDTK-SDAAAYEFTTLTCIPGNLMYNG--TKIQLLDLPGIIEGAAHGKGRGKEVIAVARTADLVLMVLDGgKEQVNRHREILENELE--TVGLRLNKTPPNV 152
                  6789*********************.**********************..89************************************985378889**********9..8888877666665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.7
    TIGR00231 112 gvpiilvvnKiDlkd.d 127
                   v  + + nKiD  + +
  MMETSP1174-20130828|35795_1 216 YVRCLYAYNKIDMITiE 232
                  55666678888888742 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0     6e-10   2.1e-07     190     302 ..      36     146 ..      28     160 .. 0.86
   2 !   12.9   0.0   2.4e-05    0.0081     301     347 ..     216     261 ..     199     265 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 6e-10
    TIGR03156 190 ptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei 302
                   +val+G+   GKstll +lt+++  a+   F+TL     +l ++  +++ l D  G i+   h      k  +  +++adl+l v+D  +e+++++ e  e+ Le +g++  
  MMETSP1174-20130828|35795_1  36 GRVALIGFPSVGKSTLLSTLTDTKSDAAAYEFTTLTCIPGNLMYNG-TKIQLLDLPGIIEGAAHGKG-RGKEVIAVARTADLVLMVLDGGKEQVNRHREILENELETVGLRLN 146
                  68**********************************9999998865.5999**********999865.56999********************************99887533 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.4e-05
    TIGR03156 301 eipvllvlNkidkleeeeleeleekkeeavlvsAkkgegleeLleai 347
                   +++l+++Nkid+++ ee+++l+++ ++++++sA+ + +l+ Ll+++
  MMETSP1174-20130828|35795_1 216 YVRCLYAYNKIDMITIEEVDKLARE-PHSLVISAHMELNLDYLLSKM 261
                  458899**************99987.89*************999876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.4e-10   4.8e-08     211     305 ..      37     129 ..      27     154 .. 0.85
   2 !    4.9   0.0    0.0072       2.4     306     350 ..     204     250 ..     188     311 .. 0.69

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.4e-10
    TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkd 305
                  ++a++G + vGKS Ll  l +  ++  ++++ tt  ++ ++l  +G +++llD  Gi e a +    G +     +++adlvl+vlD  k++ + 
  MMETSP1174-20130828|35795_1  37 RVALIGFPSVGKSTLLSTLTD-TKSDAAAYEFTTLTCIPGNLMYNGTKIQLLDLPGIIEGAAHGKGRG-KEVIAVARTADLVLMVLDGGKEQVNR 129
                  79**************98766.588899*******************************999877777.45678899**********87776544 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0072
    TIGR00450 306 deli..itlkkkkkdlllvlNKiDLaeleilkselkltvsllsakql 350
                  deli  i+ ++k   +l  +NKiD+++ e+  +    + sl++ +++
  MMETSP1174-20130828|35795_1 204 DELIdvIQGNRKYVRCLYAYNKIDMITIEEVDKLAREPHSLVISAHM 250
                  3354115566777799**********988888877777666554433 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.5e-12   1.2e-09       1     105 [.      36     140 ..      36     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 3.5e-12
    TIGR00436   1 gfvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhek.khklnellvkeirkalsevdlilfvvdsdeknke..dellleklqk 105
                  g+va++G p+vGKSTLl +l++ k+        TT+  i g+l+ + ++i ++D PG+ e   h   +   ke+    +  dl+l+v+d+ +++ +   e+l ++l +
  MMETSP1174-20130828|35795_1  36 GRVALIGFPSVGKSTLLSTLTDTKSDA-AAYEFTTLTCIPGNLMYNGTKIQLLDLPGIIEGaAHG--KGRGKEVIAVARTADLVLMVLDGGKEQVNrhREILENELET 140
                  68*******************999875.67899*************************8874555..45589999999***********9776655345666666654 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.4e-10   4.8e-08       2     102 ..      37     135 ..      36     163 .. 0.80
   2 ?   -1.9   0.0      0.81   2.8e+02     112     153 ..     220     258 ..     202     267 .. 0.46

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.4e-10
    TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiak 102
                   va++G p VGKStL+  l+ ++ +A   ++  +T     g+  ++g++++l+D +G+ e +++ + +  +++ +  ++ad++l+v+d+ ++  ++++ei +
  MMETSP1174-20130828|35795_1  37 RVALIGFPSVGKSTLLSTLTDTKsDAAAYEFTTLT--CIPGNLMYNGTKIQLLDLPGIIEGAAHGKGR-GKEVIAVARTADLVLMVLDGGKEQVNRHREILE 135
                  59******************987467777776666..799******************6666664444.5566677799*********99998888888764 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.81
    TIGR03594 112 ilvvNKvdnkkeeaeaaefyslGlg.evlaiSaehgrgikdLl 153
                  + + NK+d  + e+      +l  + + l+iSa+ + +++ Ll
  MMETSP1174-20130828|35795_1 220 LYAYNKIDMITIEEV----DKLAREpHSLVISAHMELNLDYLL 258
                  344444444432222....222211023444555555555554 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06   0.00042       7      39 ..      40      71 ..      36      80 .. 0.90
   2 !   12.1   0.1   4.8e-05     0.016      67     105 ..      82     120 ..      76     132 .. 0.91
   3 ?   -3.0   0.0       1.9   6.7e+02     223     249 ..     229     255 ..     220     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.2e-06
    TIGR00092  7 ivGLpnvGkstlfqaitkaklgeaanyPfatie 39
                 ++G p vGkstl + +t +k  +aa y f+t+ 
  MMETSP1174-20130828|35795_1 40 LIGFPSVGKSTLLSTLTDTKS-DAAAYEFTTLT 71
                 79*****************99.********985 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.8e-05
    TIGR00092  67 ttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvv 105
                  t+++++D+ G+++Ga++G+G G + +a  R  d+++ v 
  MMETSP1174-20130828|35795_1  82 TKIQLLDLPGIIEGAAHGKGRGKEVIAVARTADLVLMVL 120
                  7899******************************99987 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 1.9
    TIGR00092 223 kvkeivaefkegdkvvlvsaelesels 249
                   ++e v++   +++ +++sa++e +l 
  MMETSP1174-20130828|35795_1 229 ITIEEVDKLAREPHSLVISAHMELNLD 255
                  457788889999999999999998876 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-09   4.9e-07       1      82 [.      42     122 ..      42     133 .. 0.84
   2 ?   -3.4   0.1       1.7   5.9e+02     172     172 ..     342     342 ..     281     381 .. 0.38

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.4e-09
    TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvda 82 
                  G p vGKstl+  Lt+++   + +  +T     g+l ++g +i++ DlPGi +  +     + ++   +   adLv+ v+d 
  MMETSP1174-20130828|35795_1  42 GFPSVGKSTLLSTLTDTKSDAAAYEFTTLTCIPGNLMYNGTKIQLLDLPGIIEGAAHGK-GRGKEVIAVARTADLVLMVLDG 122
                  6799***********************************************88766664.3333334455678888888885 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
    TIGR00437 172 a 172
                  +
  MMETSP1174-20130828|35795_1 342 L 342
                  1 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.1e-07   3.8e-05     120     176 ..      37      95 ..      30     137 .. 0.80
   2 ?   -2.6   0.0       1.7     6e+02      50      70 ..     218     238 ..     202     280 .. 0.67
   3 ?   -1.3   0.4       0.7   2.4e+02      81     117 ..     346     382 ..     326     384 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.1e-07
    TIGR03596 120 ralvvGiPNvGKStliNrlakkkvakvgnk.pgvTksqqw.iklskeleLlDtPGilwp 176
                  r+  +G+P vGKStl+ +l+  k+  ++ +   +T      +  +++++LlD PGi+  
  MMETSP1174-20130828|35795_1  37 RVALIGFPSVGKSTLLSTLTDTKSDAAAYEfTTLTCIPGNlMYNGTKIQLLDLPGIIEG 95 
                  8999****************988766665426777765540555679*********865 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
    TIGR03596  50 prlivlnkaDladpektkkwl 70 
                  ++l+  nk D++  e+++k+ 
  MMETSP1174-20130828|35795_1 218 RCLYAYNKIDMITIEEVDKLA 238
                  456667888888777666544 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.7
    TIGR03596  81 lavnakkkkkvkkilkaikkllkekkeklkakglkkk 117
                  ++v++k+++++++ ++a +++++ek++++++ g kk+
  MMETSP1174-20130828|35795_1 346 TIVQQKQSRDYASKVQAYNDMVAEKRKNRTKAGRKKR 382
                  5567777777777778888888888888777777765 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   8.3e-07   0.00028       9     110 ..      37     136 ..      30     160 .. 0.83
   2 ?   -0.2   0.0      0.23        77     111     164 ..     212     262 ..     178     283 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.3e-07
    TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeellee 110
                  ++al+G   +GKS+l+ +lt+++    + ++ tT   +  ++ + +   + l+D +G+ + ++ G+ R +   +v +++dl+l+v+d  +e+ +  +e+le+
  MMETSP1174-20130828|35795_1  37 RVALIGFPSVGKSTLLSTLTDTKSDA-AAYEFTTLTCIPGNL-MYNGTKIQLLDLPGIIEGAAHGKGRGKEVIAVARTADLVLMVLDGGKEQVNRHREILEN 136
                  799*****************987654.556667766776655.5666789**************************************99988888888764 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.23
    TIGR03918 111 lkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkeali 164
                   ++k + +++++nkid+ + e   e ++ ++e + +++sa+ + +++ l +++ 
  MMETSP1174-20130828|35795_1 212 GNRKYVRCLYAYNKIDMITIE---EVDKLAREPHSLVISAHMELNLDYLLSKMW 262
                  3567789999******99875...556666677788888888888888877765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.1e-05     0.014     157     217 ..      37      94 ..      29     100 .. 0.82
   2 ?   -3.6   0.0         3     1e+03      83     105 ..     208     230 ..     202     237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.1e-05
    TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl...dkesvllDtpGiin 217
                   v ++G   VGKS+l+  l +++++         +  TTl  i  +l    ++ +llD pGii+
  MMETSP1174-20130828|35795_1  37 RVALIGFPSVGKSTLLSTLTDTKSDAA------AYEFTTLTCIPGNLmynGTKIQLLDLPGIIE 94 
                  6789*************9997766544......5999****99988865567789*******97 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3
    TIGR03597  83 kelkrfvkenkvllvvNKidllp 105
                  + ++   k  ++l+  NKid++ 
  MMETSP1174-20130828|35795_1 208 DVIQGNRKYVRCLYAYNKIDMIT 230
                  55555555566777788888765 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001     0.035      20      73 ..      37      91 ..      29     100 .. 0.74
   2 ?   -3.4   0.0       4.2   1.4e+03     131     152 ..     218     239 ..     202     253 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
    TIGR03598 20 eiafaGrSNvGKSsliNaLtnrkklartSktPGrTqli.nffevneelrlvDlPG 73
                  +a++G   vGKS+l+ +Lt+ k+ a + +    T    n+    +++ l DlPG
  MMETSP1174-20130828|35795_1 37 RVALIGFPSVGKSTLLSTLTDTKSDAAAYEFTTLTCIPgNLMYNGTKIQLLDLPG 91
                 69********************988776554444432224444456777777777 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.2
    TIGR03598 131 pvlvvltKaDklkkselkkalk 152
                  ++l  ++K+D ++ +e++k ++
  MMETSP1174-20130828|35795_1 218 RCLYAYNKIDMITIEEVDKLAR 239
                  4444556777777666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1337.26
//
Query:       MMETSP1174-20130828|35804_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1174-20130828|35796_1  [L=1005]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-229  762.7   0.0   1.4e-229  762.4   0.0    1.0  1  TIGR00344 alaS: alanine--tRNA ligase
    4.1e-68  228.3   1.4    2.5e-51  172.7   0.9    4.6  3  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  762.4   0.0  6.7e-233  1.4e-229       1     844 [.      53     985 ..      53     988 .. 0.87

  Alignments for each domain:
  == domain 1    score: 762.4 bits;  conditional E-value: 6.7e-233
    TIGR00344   1 evrqefLdfFk.ekgHevvksaslvprndptllltnagiaqfkdiftglvkpps.....krlvnaQkciRl....nDlenVGrtarHhTlFemlgnfsfgdYfkeeaiefawellteelgldkerlvvtvyeeDe..........eayelWekegipaeriikldakdnfWelGd.GpcGPctEiyyDrvggkvgekelfedddryvEvwnlVFmqfnreadGnlkelpkkniDTGmGlERlvavlqdvptnydtdifkkliekieeitgvkyasekagemdkkkveeqsalrviaDHvravaflladGvvpsnegrgYvlRrllRralrlakk.lelkeeFlkklvetlievledlypelkekeelveeileeEeerfakTlerGlrllekllkkl...ekkeldgedlfkLydtyGfPvelteelaeekglkvdiegfeklmaeqrerskeakkdls.velqeeel.....anvkkateflgYee.leveakviglf.edgk......lvdei.eagqeavviLdktvfYaesGGqegDkGyli..kddakvrvedvqkangvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaalkkvl......gehvkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkkgalal.fgekygekvRvvsvg................dvsvelCgGtHvenTgeiglfkIvkeegiaaGvrRieavageeaie......................llkeeekkLkeladkLkkeleelakkve..........klkeelkalrkeleslkkkiakqkaeelkekaetieelkvlvekvdak.ekkelkeladelkek..eeavvvlasv.eeekvklvaavsedvlkkkikanelikq.vakviggkgggredlaq 844
                  +vr +f++fF+ e+gH++ ks++ vp+ndpt+l++nag++qfk++f+g+ +p +     kr+ n+QkciR+    nDl++VG++ +HhT+Femlgn+sfgdYfkeeai+ aw  lt +++ld++rl+vt++  De          e+ ++W k g+p+ r++++da dnfWe+G+ GpcGPctEi+yDr+gg+ +++++++dd++++E+wn VF+q+ r++ G l+ lp +++DTGmG+ERl+++lq++++nydtdifk+l+++i+e tg+  ++  +ge d ++++   a+rv+aDH+r+++f +adG+ p + grgYvlRr+lRra+  +++ l++k+ F++klv+++++ ++ +++elk++e++v+ +l+ Ee++f++T+e+Glr ++k+ k+l   +++ ++g+++f L  t GfP +lte +ae++gl+v+  +fe++++ ++  sk+ + + + + ++ +e         +++t+  ++++  e  ++v+++f   g+      + +++  +++  ++i++ ++fYae GGq++D+G l+  + ++++rv++v+ + g v+h+g++e+g ++vgd+++  +d +rR +i+ nH++tH+l++al+kvl       ++++Q+Gs v++++lr+D+s    +t ++l++vE+ vn+qi en++v   + + ++a ++ +l++ fge+y++ vR++s+g                d+s+e+CgGtH+e+ g+ + f+I++e+++a+GvrRi+ v+ e a +                       l++e ++Lk+  d   +                    +l+e +k l++  ++ +k+  +  ++e+ e+a++  + + +v ++d   + k+  ++++ + +    ++++++++   ++ + +v++v ++ + ++ +a  +  + v +  ggk gg+++ a 
  MMETSP1174-20130828|35796_1  53 NVRAAFIEFFTeEQGHKFWKSSPCVPHNDPTILFANAGMNQFKPLFLGQCEPGTpmaglKRACNSQKCIRAggkhNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEEAISMAWMCLTVKFKLDPDRLYVTYFGGDEekapgvpsdeETKAIWLKLGLPEARVLPFDAADNFWEMGEtGPCGPCTEIHYDRIGGRDAASLVNMDDPDVLEIWNNVFIQYTRDPAG-LTLLPSQHVDTGMGFERLTSILQNKNSNYDTDIFKPLFAAIQEETGAPPYTGLIGEKDVDTKDM--AYRVVADHIRTLTFSIADGARPDQDGRGYVLRRILRRAVYFGSQfLGAKKGFFHKLVPAVVKKFGGFFEELKAQEQTVMSVLTDEETQFNRTIEQGLRHFSKVTKELkakGSTVVSGKEAFFLAGTLGFPFDLTEIMAEQQGLTVNKGEFEEVLKASKAGSKAISGNAKdMTMESTETcylneSGIEATTQDAKFKTaHEPRSTVTAIFtGRGQqpkeagFTESVdADDEMIGIIMESSPFYAEAGGQIYDTGILTstDGSKEIRVVEVHVYAGYVLHMGTVESGRVSVGDELTCFVDYRRREKIAPNHTLTHVLNFALRKVLlgiddtTNKLQQKGSHVDDQRLRFDVSWDTPITPKDLQAVEEEVNRQISENYKVDAYVAPQAQALQIAGLRAvFGENYPDPVRIISIGadvktilekpedqcwrDFSIEFCGGTHIEQLGDAESFVIIEESNVAKGVRRIVGVTRERAHQaranaelfttrvaeaekieaplDLDTELRILKKEMD---TAF-------IgcvarssiydRLNEMAKTLKEWKKTQTKQREARCVSEVEEFAKKTPANSKVVLRLDFGsDGKTGSKVMKAFCKAnkTSSLLIISTDpDKQSIMVVSFVLKAHITESFDALLWCTKtVDAAGGGKCGGKGSNAN 985
                  69********72689***********************************998888999*************************************************************************************9*****************************************************************************7.899**************************************************99999988776..****************************************9876489******************************************************9999887778899*******************************************9999987665544444444433444433345555555555589999999999522331112223556633445568**********************97777899***********************************************************86665444799************************************************************988****************9999999999999999*********************************************9*******9987655544433333333333332222...211.......1222233233455666655555555555555567788888888888888889999998767777777666664443455555565655556677888999999999***9999866155566788999987665 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.3e-12   2.7e-09      56     172 ..      49     170 ..      41     184 .. 0.77
   2 !   14.2   0.0   9.9e-07     0.002     185     275 ..     221     323 ..     204     334 .. 0.78
   3 !  172.7   0.9   1.2e-54   2.5e-51     328     895 ..     340     999 ..     331    1005 .] 0.73

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.3e-12
    TIGR03683  56 lelkemrekflsFF.ekkgHtrieryPvvaRWRdDvyLtiAsiadFqPfvtsGlvkPpanPl......visqPsiRl....nDiDnvGrtGRHltsFemmaHhaFnsedkeiYWkdetvelckell.ee 172
                   + +++r +f++FF e++gH+  + +P v+     ++  +A + +F+P    G+++P + P+      + sq +iR     nD+D vG+   H t Fem++  +F       Y+k+e++ ++   l  +
  MMETSP1174-20130828|35796_1  49 WTCDNVRAAFIEFFtEEQGHKFWKSSPCVPHNDPTILFANAGMNQFKPLF-LGQCEPGT-PMaglkraCNSQKCIRAggkhNDLDDVGKDVYHHTFFEMLGNWSFGD-----YFKEEAISMAWMCLtVK 170
                  57899*********56788*****************************86.58888743.3322233378*****9655559*******************999973.....55555555554444333 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 9.9e-07
    TIGR03683 185 spWeGG..GnaGpslEvlv...rGlElAtLvFmqlkkkke..geieik....geryeeldlkivDtGYGlERlvWlsqgtPtvyda.vfgelvekllekagve 275
                  ++We G  G  Gp+ E+ +   +G + A Lv m+     e  +++ i+        + l+ + vDtG G ERl+ + q +   yd+ +f+ l ++++e++g++
  MMETSP1174-20130828|35796_1 221 NFWEMGetGPCGPCTEIHYdriGGRDAASLVNMDDPDVLEiwNNVFIQytrdPAGLTLLPSQHVDTGMGFERLTSILQNKNSNYDTdIFKPLFAAIQEETGAP 323
                  6787765688999***98522279999****998655433223444443343667899**************************9769****99999999875 PP

  == domain 3    score: 172.7 bits;  conditional E-value: 1.2e-54
    TIGR03683 328 vy.aivDHtrtlafmlgdgivPsnvkeGYLaRlvlRrtlrllke.lgleas.lselvemqleelkkeypelkenkdlildivelEeekyretlergkrivekll.....kekkeieldelvelYdshGippeivkeiakekgaevevPdnfyslvaerhekeeeeee.......................eekekeellkelpeteklfyedpkkkefeakvlevvd.....nevvldktlfYpegGGqpaDtGvlkaedkk..vevvdvqkvgdvilHk..veeeklkegeevkgeideerRlrlmrhHtatHvllaaarkvl.G.....eHvwqagaqkdtdkarlDitHykriseeeikeiErlaneivmenkpvkvkildrneAeekyGfklyqGGvppgkeiRvveied................vdveaCgGtHlkntgeiglikilkteriqdgveRlefaageaaieaiqeledllkesaei...............lkvepeql.petv..krffeewkeqrkeieklkeklaelkieeleseaekvg.....dvkv.vvekvdadeeelkeiaekl...aekekvvvlvsekegkvkvvvssgekv..kvkagel...vkeiakllggkggGkeklaqgkvedkekvdeale 895
                   y +++DH rtl+f ++dg  P   + GY+ R +lRr++ + ++ lg+++  ++ lv + ++++   ++elk+++++++ ++  Ee ++++t+e+g r  +k++     k+ + ++ +e   l  + G p ++ + +a+++g +v+   +f++++ + +  +++ +                        ++  k ++++e  +t ++ +  + ++  ea   e+vd       ++++++ fY+e+GGq +DtG+l+ +d++  ++vv+v+ + + +lH   ve+  ++ g+e+++ +d +rR +++ +Ht tHvl+ a+rkvl G     + + q g+++d ++ r+D++  + i+  +++ +E+ +n+ + en +v   + ++ +A +  G++   G   p + +R+++i+                 + +e CgGtH+++ g+   + i++ +++  gv R++ ++ e+a +a  + e   +++ae+               lk e++      v  + + ++++e  k++++ k++ ++ ++ +  se e++      + kv +  ++ +d ++ +++++++   +++++++++ ++ +++  +vvs   k+  + + + l    k++ +  ggk gGk + a+g+v+    ++ a+e
  MMETSP1174-20130828|35796_1 340 AYrVVADHIRTLTFSIADGARPDQDGRGYVLRRILRRAVYFGSQfLGAKKGfFHKLVPAVVKKFGGFFEELKAQEQTVMSVLTDEETQFNRTIEQGLRHFSKVTkelkaKGSTVVSGKEAFFLAGTLGFPFDLTEIMAEQQGLTVNK-GEFEEVLKASKAGSKAISGnakdmtmestetcylnesgieatTQDAKFKTAHEPRSTVTAIFTGRGQQPKEAGFTESVDaddemIGIIMESSPFYAEAGGQIYDTGILTSTDGSkeIRVVEVHVYAGYVLHMgtVESGRVSVGDELTCFVDYRRREKIAPNHTLTHVLNFALRKVLlGiddttNKLQQKGSHVDDQRLRFDVSWDTPITPKDLQAVEEEVNRQISENYKVDAYVAPQAQALQIAGLRAVFGENYP-DPVRIISIGAdvktilekpedqcwrdFSIEFCGGTHIEQLGDAESFVIIEESNVAKGVRRIVGVTRERAHQARANAELFTTRVAEAekieapldldtelriLKKEMDTAfIGCVarSSIYDRLNEMAKTLKEWKKTQTKQREARCVSEVEEFAkktpaNSKVvLRLDFGSDGKTGSKVMKAFckaNKTSSLLIISTDPDKQSIMVVSFVLKAhiTESFDALlwcTKTVDAAGGGKCGGKGSNANGSVQGLGGLSTAVE 999
                  552578*********************************997653788877689******************************************99988887666666777788999999*********************9985.568877777666666554444555666677888887777653333344444444588888887777776677666666655445569*********************98875445***************63266666***********************************975444444799************************************************************998876555.68******999999*********99999**********************************9999999887777666555555441111111100000003333322211112112344566666666666666666666665555555543111113344144445677777777776664323334444444444444444444433332222222221113555555667777788888887777666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.20s 00:00:00.99 Elapsed: 00:00:00.84
# Mc/sec: 1579.16
//
Query:       MMETSP1174-20130828|35805_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1174-20130828|35806_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1107.91
//
Query:       MMETSP1174-20130828|35803_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.5e-122  404.8   0.0   9.3e-122  404.3   0.0    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    2.1e-14   51.6   0.0      6e-14   50.1   0.0    1.7  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      2e-11   41.5   0.0    3.2e-11   40.8   0.0    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.1e-09   33.6   0.0    4.8e-09   32.9   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.6e-08   32.2   0.0    2.9e-08   31.4   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.6e-08   31.2   0.0    9.1e-08   29.9   0.0    1.6  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.2e-06   25.9   0.0    1.8e-06   25.4   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    6.9e-05   20.2   0.0    0.00016   19.0   0.0    1.7  1  TIGR02415 23BDH: acetoin reductases
     0.0037   14.5   0.0     0.0062   13.8   0.0    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.3   0.0    2e-124  9.3e-122       3     313 ..      49     380 ..      47     382 .. 0.96

  Alignments for each domain:
  == domain 1    score: 404.3 bits;  conditional E-value: 2e-124
    TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfr..esgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagk.vpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgkrq.....................esfeqelseevsddekakklwelseklvg 313
                  k+  ++tgassglg ++akal ek  + v+ a rd+ek +++a ++glp+++++il+l+l+sl svrkfv +++  +s+r+ld lvcnaavylp   ep +s dgye+s+a nhlghfll+nllled+ k+  kd r+ii+gs+t+ns++++g  v ++ad+g+++g e+   ++ i+m+dg +f +akaykdsk+cnm+tv +lh+ryh++tgi+f+s+ypgc+a+t+lfre+ + fr+ fp f ky+t+gyv ++eag+rlaqvv dp   ksgvywsw+  +                     e fe++ s++v++ +k +++wels kl g
  MMETSP1174-20130828|35803_1  49 KKLCVVTGASSGLGRETAKALTEKDGYFVICAVRDVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFNLKafKSNRPLDRLVCNAAVYLPKDPEPSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKA--KDARMIIVGSITGNSNTVGGGlVYPRADVGEFQGWETDGGKM-IPMVDGTPFFGAKAYKDSKVCNMMTVSQLHERYHESTGITFSSIYPGCIAETALFREKRAWFRKGFPLFMKYVTGGYVGQQEAGERLAQVVDDPICSKSGVYWSWNGGAkqvgvydrksksvvgaggsggEIFENDQSDQVTNRAKGERMWELSSKLCG 380
                  66789*******************99*********************************************99944589************************************************9876..688***************9762567************99999.9********************************************************************************************************976556999**************9999*************************98 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.3e-16     6e-14       2     143 ..      53     197 ..      52     203 .. 0.88
   2 ?   -2.1   0.0       1.2   5.6e+02     155     182 ..     244     271 ..     230     277 .. 0.71

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1.3e-16
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelvee..veeelgeidilvnnAGit..rDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGna 143
                  +vtGas g+G+++ak+l+++    vi+ +++ ek++++a+e+    +k a+++l++s+ ++v+++v +  + ++   +d lv+nA +   +D      +e+ ++  ++vn  g f +++  l+ m k++  r+i ++s+ g +  +
  MMETSP1174-20130828|35803_1  53 VVTGASSGLGRETAKALTEKDGYFVICAVRDVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFNlkAFKSNRPLDRLVCNAAVYlpKD-PEPSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKAKDARMIIVGSITGNSNTV 197
                  8****************98877777777889999******************************9976115678889*********972244.45688999***************************************987665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.2
    TIGR01830 155 ligltkslakElasrnitvnavaPGfie 182
                  ++++++   +   s +it+ ++ PG i+
  MMETSP1174-20130828|35803_1 244 MMTVSQLHERYHESTGITFSSIYPGCIA 271
                  5555555666677899999999999986 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0     7e-14   3.2e-11       2     141 ..      50     193 ..      49     198 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 7e-14
    TIGR01963   2 kvalvtGaasGiglaiakela.aaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieava..aefgsldiLvnnAGiqhvapie.efptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                  k  +vtGa+sG+g++ ak+l  ++G  v+    + e+++++a+e+     + + l++++++ +++++ + +++  ++ + ld Lv nA +   +  e ++ ++ +e  +avn  + f + +  l  m k++  r+i ++s+ g 
  MMETSP1174-20130828|35803_1  50 KLCVVTGASSGLGRETAKALTeKDGYFVICAVRDVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFNLKafKSNRPLDRLVCNAAVYLPKDPEpSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKAKDARMIIVGSITGN 193
                  7789****************835788898888889********************************99766511567789*********997655539******************************************986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.1e-11   4.8e-09     414     554 ..      49     190 ..      41     201 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.1e-11
    TIGR02632 414 rrvalvtGgasGiGrevarrlvd.eGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaaf.a.evalayGGvdivvnnaGiavskpleete.leeWdlnldilatGyflvareaarllrkqglggnlvfiask 554
                  +++ +vtG++sG+Gre+a+ l++ +G  v++a  d e++++vaae+      +k   l+l++ +  +v++ + + ++  +   +d +v na +   k+ e    ++ ++++++++  G+fl+++     + k +  + +++++s 
  MMETSP1174-20130828|35803_1  49 KKLCVVTGASSGLGRETAKALTEkDGYFVICAVRDVEKMKQVAAEIG--LPPNKHAILELELSSLASVRKFVfNlKAFKSNRPLDRLVCNAAVYLPKDPEPSYsEDGYEMSMAVNHLGHFLLCNLLLEDMAK-AKDARMIIVGSI 190
                  57899****************9636999******************9..7888888999*********986514245566778*************99998774778***************9988887765.456677777764 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.3e-11   2.9e-08       6     141 ..      50     190 ..      47     204 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 6.3e-11
    TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvealG...rkflslkadladeeaakalvd..eaveeagkidilvnnaGiirredav.efsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasl 141
                  k  +vtGa++GlG+  a +l+e  +  v  +++++++ ++  +++G   +k   l+++l++ ++++++v   +a ++   +d lv na +   +d +  +se  ++  + vn    fll++ + +++ k  + +++i + s+
  MMETSP1174-20130828|35803_1  50 KLCVVTGASSGLGRETAKALTEKDGYFVICAVRDVEKMKQVAAEIGlppNKHAILELELSSLASVRKFVFnlKAFKSNRPLDRLVCNAAVYLPKDPEpSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKA-KDARMIIVGSI 190
                  6789****************9887666666666666555555555533379999**********9999861246667779********99876665438**********************999988765.47888877776 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0     2e-10   9.1e-08       1     146 [.      50     198 ..      50     212 .. 0.87
   2 ?   -2.6   0.0       1.7   7.7e+02     165     184 ..     252     271 ..     229     278 .. 0.63

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 2e-10
    TIGR01829   1 rvalvtGglgGiGtaickrla.kdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea..elGpvdvlvnnaGitrdavfk.kmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                  ++ +vtG++ G+G++ +k+l+ kdGy v+++v+ + e+ k+++ e ++   + a+++ ++ss  + ++ v +++a     p+d lv na +   +  +   +++ +e  +++n  + f + + ++e+m++ +  r+i + s+ G    +G
  MMETSP1174-20130828|35803_1  50 KLCVVTGASSGLGRETAKALTeKDGYFVICAVR-DVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFNLKAfkSNRPLDRLVCNAAVYLPKDPEpSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKAKDARMIIVGSITGNSNTVG 198
                  5689****************7479******999.89999*******************************98887325679********99766554415677889999***********************************987776 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.7
    TIGR01829 165 aqegakkgvtvnviaPGyia 184
                   +   ++g+t   i PG ia
  MMETSP1174-20130828|35803_1 252 ERYHESTGITFSSIYPGCIA 271
                  34456789999999999886 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.9e-09   1.8e-06       2      90 ..      51     134 ..      50     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.9e-09
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyeril 90 
                  l++vtGas G+Gre a+ l +    +g  ++   R+ e +k+  aei+   ++       l+l++ + v +++  l++   ++ ++r++
  MMETSP1174-20130828|35803_1  51 LCVVTGASSGLGRETAKALTE---KDGYFVICAVRDVEKMKQVAAEIGLPPNKH--AILELELSSLASVRKFVFNLKAFKSNRPLDRLV 134
                  79*****************99...8999********************844444..456899*********999999998888888875 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.5e-07   0.00016       1     121 [.      50     174 ..      50     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.5e-07
    TIGR02415   1 kvalvtGaaqGiGkaiaerLa.kdGfavavadlneetaketakelkekgtkavavkldvsdkseveeave..qaveklGeldvlvnnaGval.vtpileiteeeleklynvnvkgvlfGiqaaae 121
                  k+ +vtGa+ G+G++ a+ L+ kdG+ v+ a  + e++k++a e+    +k  +++l++s+ ++v + v   +a ++   ld lv na v l  +p  + +e+  e   +vn  g +       e
  MMETSP1174-20130828|35803_1  50 KLCVVTGASSGLGRETAKALTeKDGYFVICAVRDVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFnlKAFKSNRPLDRLVCNAAVYLpKDPEPSYSEDGYEMSMAVNHLGHFLLCNLLLE 174
                  6789****************8479*99988877889999*******99999999*******9999999962257888889*******99975156777778888888888887777665555555 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.4e-05    0.0062       2     141 ..      53     194 ..      52     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
    TIGR01831   2 lvtgasrgigraialklaa.dgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevle..adiaehgayygvvlnagiar.daafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvm 141
                  +vtgas g+gr  a  l+  dg+ + +   +d  + ++++a+i     +  +l+++++   +vr+ +   +  +++     +v na +       p+ se+ +++ +  n  g + + + l+  m +a++  r+i + s++g  
  MMETSP1174-20130828|35803_1  53 VVTGASSGLGRETAKALTEkDGYFV-ICAVRDVEKMKQVAAEIGLPPNKHAILELELSSLASVRKFVFnlKAFKSNRPLDRLVCNAAVYLpKDPEPSYSEDGYEMSMAVNHLGHFLLCNLLLEDMAKAKD-ARMIIVGSITGNS 194
                  79**************986267655.556678889999**************************97641245678888999****9997524568***************99999999999999988865.6888899988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.39
# Mc/sec: 1316.51
//
Query:       MMETSP1174-20130828|35800_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-202  671.8   2.4   1.5e-202  671.6   1.7    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
   1.6e-107  358.3   4.9   1.9e-107  358.0   3.4    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    6.9e-83  276.7   6.7    8.6e-83  276.4   4.7    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    3.6e-80  267.8   5.0    4.7e-80  267.4   3.5    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    9.8e-79  263.3   6.7    1.3e-78  262.9   4.6    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    7.8e-77  256.5   5.9    9.4e-77  256.3   4.1    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
      1e-74  249.9   5.8    1.3e-74  249.6   4.0    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    1.8e-61  206.1   2.3    2.5e-61  205.6   1.6    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
      6e-58  194.6   7.0    7.9e-58  194.2   4.9    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit


Domain annotation for each model (and alignments):
>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  671.6   1.7  3.3e-205  1.5e-202       2     529 ..      13     544 ..      12     546 .. 0.98

  Alignments for each domain:
  == domain 1    score: 671.6 bits;  conditional E-value: 3.3e-205
    TIGR02346   2 iasllkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgnedilaelvakaiitvlPknsek....fnvdnirvvkllGgslsdsevlkGlvlkreaegsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeed.skistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpaGGPkkeq 529
                  ++ +lk+G+++++gl eav+kniea k +se++  s+GPngmnklv+nhl+k++v++D+ t+l e+e+qhPaak++ la+++q++e+GDg+nl +++agelL+ a +l+r+G++ sei++Gy++al k+le+L  +v  +++d +++ +li a+k+++ skq g ed+l++lva+a++tv+P++++      n d +rvvkl+Gg++ +s+v++G+vl r aeg++  v+ ak+ +f c+++ ++tet GtvL++na+++l+y+k+eek +e++i +ia++g  v+v+gg++s++a h++ k++++ +ki+sk+++rrlc +vgatalvrl+ ++pee+G++++v+v+e gskkvt+++q   + +k++tivLr s +++++d+er+ dDG++ ++ l++  +++pGagate++La++l++ a+k+ +l+qy+i+kf+ea e++Pr+l +n+G +++ ++skLya+hk g k++g+d ++ ++   +++e+ + Dll +k +ai+lat+aa+tvL+vDqiim+k aGGPk+++
  MMETSP1174-20130828|35800_1  13 TSGMLKQGHKSFEGLSEAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVSHTIEDPRDEAQLIFAVKPVIGSKQQGYEDYLSQLVAQACLTVMPDKDSGkspsVNPDAVRVVKLMGGNVMQSTVINGMVLPRGAEGTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFEQSGMEdTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKAGGKETGVDPKNSTI-FANATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMSKVAGGPKTPK 544
                  578***********************************************************************************************************************************************************************************9887567779***********************************************************************************************************************************************************************997655****************************************************************************************************************999988.89********************************************875 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.0   3.4  4.2e-110  1.9e-107       5     520 ..      17     534 ..      15     535 .. 0.95

  Alignments for each domain:
  == domain 1    score: 358.0 bits;  conditional E-value: 4.2e-110
    TIGR02339   5 lkegtqrtkg.rdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaeki..dvedkellkkvaetsltskavaeeakdklaelvveavkqvvekr.edgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvega..knakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeied.mlelgvieplkvkeqaiksateaatlilriDdviaa 520
                  lk+g +  +g ++a+ +ni+aaka++e+v+s++GP G++k++v+ l  +++  D +t+l e +i+hPaak++  +a+ q++e gDG    v +aGeLl+ a +Ll q++h + iv+Gy+ a  k+le++  ++++   d+ d+ +l   ++  + sk+    ++d+l++lv +a  +v+  + ++++ +v+ d ++++k  Gg++ ++ +++G+v+ +    eg  + v+ aki +    +e e te++  + i + d + ++ + ee++l+e++ +ia++G+ v+++   i ++a+h++ak+G+++v+   k D+++l   +Ga  +  l  ++++++G+ + v+ +++g +k++  e+   +++k  ti+lr + + v+++leR+ +D +  ++++ + ++ v+G+Ga+e++la+ lre+a+k    +q ++++f +ale +pr+l +n+G d  +++ +l a+h+  g k++gvd +++ i   ++e gv++ l  k  ai+ at+aa+ +lr+D++i +
  MMETSP1174-20130828|35800_1  17 LKQGHKSFEGlSEAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVSHTieDPRDEAQLIFAVKPVIGSKQQ--GYEDYLSQLVAQACLTVMPDKdSGKSPSVNPDAVRVVKLMGGNVMQSTVINGMVLPRG--AEGTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFEQSgmEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKA-GGKETGVDPKNSTIFAnATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMS 534
                  677777777746899******************************************************************************************************************99987751345589999999********99..59************99886550566789***************************987..589999******************************************************************************************************************************99887754349********************************************************************************************************6.8999********9976599*******************************986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   4.7   1.9e-85   8.6e-83      12     516 ..      32     534 ..      24     535 .. 0.92

  Alignments for each domain:
  == domain 1    score: 276.4 bits;  conditional E-value: 1.9e-85
    TIGR02342  12 tsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkel.sipvdl.sdrealiksattslsskvvsqyssllaplavdavlkvi...dsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelv..eevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggi.tdileeevlqpllvtksavtlasetvrsilkiddivlt 516
                    ni aaka+++++ +s+Gp+Gm+kl+ ++  ++i++ d +t+l ++e+ hpaak++   ++ q++e GdG+   v +aG ll+ a +ll++g+h + i  +++ a++++l++l  + s++++   d+++li +++  + sk    y + l+ l  +a l v+   ds k+ +v+   ++vvk +Gg + ++ +i+G+vl++ a    g ++ ++ aki++    + +  t++   v++++  +m    k e k + +++ +i+++g+ vl+        +++++a hf+ak +++ vk   + ++  ++ t+G++ +  +   t++++G+ + v  +e  s++  i    G+++ +k  ++++r s + vi++ ers  d +  i+ l ++  +++G Ga e+++a++l+++a++ +  ++y +r+f +alev+p  l +n+G +  ++v++l  +h+ G k++G++ ++++i ++ +e  v+  l  + sa++la+++  ++l++d i+++
  MMETSP1174-20130828|35800_1  32 YKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMvSHTIEDpRDEAQLIFAVKPVIGSKQ-QGYEDYLSQLVAQACLTVMpdkDSGKSPSVNPDAVRVVKLMGGNVMQSTVINGMVLPRGAE---GTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVS-----GGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVhvKEFGSKKVTIFEQSGMED-TKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKAGGKETGVDPKNSTIfANATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMS 534
                  579***************************************************************************************************************9872456654168999************6.56888999998888888853337778899***************************99876...99***********************************************************9964.....5678*************************************************997611566666666777778765.6889**************************************************************************************************************999835677777888777888********************98 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.4   3.5     1e-82   4.7e-80      15     521 ..      28     533 ..      16     537 .. 0.94

  Alignments for each domain:
  == domain 1    score: 267.4 bits;  conditional E-value: 1e-82
    TIGR02344  15 rkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvle.elsipv.dvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflte..ckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkiv.dmkekgiweplavklqtiktaiesavlllriddivs 521
                   +a  +ni+aaka+++++ +++Gp+ m k++++ l  i+++ d  ++l e +++hpaak +   +  q+ e GdG+   + +aGell+ a ++l++ +h + iv++yk al ++l+ l   +s ++ d  dea+l  +vk  ig+k    ++d +++l  +a  tv+ ++ +g++  v+    ++v k+ GG++ +s+v++G++l +          ++  +i ++ c +e   +e+   v i + +d+ +  + ee+ ++++   i ++ ++++++   +s++a h+++k+++  ++   k d  r+    Gat + r    + +++G+ +  ++vk +G +  t +++   +d k  ti+lr + + v+n++er  +d++a ++ ++  p++vpG Gate++ +++l+++a+k++ ++q+ ++  ++alev+pr+l qn+G +v   +++l a h+++  k++G+d ++ +i  + +e g+ + l+ k  +i+ a ++a+ +lr+d+i+ 
  MMETSP1174-20130828|35800_1  28 SEAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPgMVSHTIeDPRDEAQLIFAVKPVIGSKQQ-GYEDYLSQLVAQACLTVMPDKDSGKSPSVNP-DAVRVVKLMGGNVMQSTVINGMVLPRGAEG--TISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGS-CHKVHVKEFGSKKVTIFEQsgMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKAG-GKETGVDPKNSTIFaNATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIM 533
                  457789*****************************************************8888899****************************************************84567777467899**************75.6********************9999977775.569*********************997644..456899*************************************************************************************************************95.9999***********99873369********************************************************************************************************99.5899****999986378999****************************984 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.9   4.6   2.8e-81   1.3e-78      12     528 ..      29     533 ..      18     538 .. 0.93

  Alignments for each domain:
  == domain 1    score: 262.9 bits;  conditional E-value: 2.8e-81
    TIGR02340  12 dvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveel.gkealinvaktslsskiislesdlfsnlvvdavlavkvtnekge.tkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilik..gtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngki.rdnveaGvlePavskvkslkfateaaitilriddlik 528
                  +++ +n+ a+ a++++v +s+GP G++k++v+ +  +++  d +t+l ++e++hPaak++   a++q+ e GdG    v +a ell+ a +l+++ vh + ++sGy++al ++++ +   ++ ++e+   +++li ++k  + sk  + e d++s+lv +a l+v   + +g+      +av ++k  G+ +++s++++G +l   ++++   + v +aki+++  +++    + + ++++ +++++ +  k e + + e i  i ++G++v++  + i ++a   +   g+m+v+  +k d++r+  + Gat ++ l     e       +G++++v  ++++ +++ +++  g +  k+a+i+lr + + +++++ers  d ++ +++     + v+G+Ga e+ l+  l e a+  +s +q +i +f eal ++P++l  n+++d t lv+kl a h+a          k +G+d +n +i ++ +e Gv++   +k   ++ at+aait+lr+d++i 
  MMETSP1174-20130828|35800_1  29 EAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVSHTIEDPrDEAQLIFAVKPVIGSKQQGYE-DYLSQLVAQACLTVMPDKDSGKsPSVNPDAVRVVKLMGGNVMQSTVINGMVLP--RGAEGTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPE------EMGSCHKVHVKEFGSKKVTIFEqsGMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKA--------GGKETGVDPKNSTIfANATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIM 533
                  46789*******************************************************999**********************************************************9999875156689***********98876.99*********999876655541566779**********************97..567788899***************************************************************************************************9999766544......48***************9998633778899*************************************************************************************************99865........45668*****9998356689*****************************996 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   4.1   2.1e-79   9.4e-77       7     521 ..      17     535 ..      13     537 .. 0.93

  Alignments for each domain:
  == domain 1    score: 256.3 bits;  conditional E-value: 2.1e-79
    TIGR02345   7 lkegtdtsqGkgq.lisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeia.veldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.......liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlft..ggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdietee.ildaleafvwePllvkknalkaateaaatilsvdetikak 521
                  lk+g  + +G +  +  ni+a++ai+e++ + +GP Gm+kl+v++ +  +vs d +t+l++++i hPaak++   a+ q+se GdG    v +agell+ a +l+++g+h+  i+ +++ al  ++e l  +   ++++ ++e    l    +  + sk  + +++++s++v +a l++  d+   k        + v k+ GG + +s +++G+ + +     G e     +   ki+++   +e ++ ++   + + +++d  +   +e k + e +  i ++G++v++s  +i ++a+ + a++ +++    s+ d++r+ +++Ga+ l      + +++G c     k  Gs++  +f+  g+e++k +t++lr + + ++++ ers +d i  +++  +  ++v+G Ga+e++l+  lre+++k+d   q  i+ +++alev+Pr l +n G d ++++ kl ++h+  g+k +Gvd ++++  ++a e+ v + l  k  a++ at+aa t+l vd+ i+ k
  MMETSP1174-20130828|35800_1  17 LKQGHKSFEGLSEaVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNkIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVsHTIEDPRDE--AQLIFAVKPVIGSKQ-QGYEDYLSQLVAQACLTVMPDKDSGKspsvnpdAVRVVKLMGGNVMQSTVINGMVLPR-----GAEGTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFEqsGMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKA-GGKETGVDPKNSTiFANATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMSK 535
                  67778888888762568*************************998765999********************9999******************************************************98750556644444..445556678899997.7899***********999876655556788888999******************9987.....8899999***********************************************************************************************************************************8335799******************************************************************************************************99.*********9999568999*******************************9976 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   4.0   2.8e-77   1.3e-74      26     531 ..      28     534 ..      16     535 .. 0.93

  Alignments for each domain:
  == domain 1    score: 249.6 bits;  conditional E-value: 2.8e-77
    TIGR02343  26 leakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlava.dler...kdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtn.dmkelkvletligkkqqillatqlvkmilkiddvisd 531
                   ea+  ni aaka+++++++s+Gp+G++k+++++ ++i v+ d +t+l + +++++ ak++   ++ q++e GdG+   v +a+ ll+ a +ll +G+h   i  G+++a+  ++e l  +  +   d  ++ +l+ a+k  +gsk  +  ++ l++++ +a l+v+ d++      v+ d ++v + +Gg++ ++ +i+G+++ +         +v+ aki+i+ c  e     t   + i ++++  + +k e++ +ee+i  i ++G+++++      + a h++ +++l +v+  +  ++  +  + g   + r+   + e++G++++v+ k+fG++k  ++    ++++k  ti++r + + +i++ +rs  d +  ++ l +  + v G Ga+e+ ++ a+ eea+k+ +++qy+ir f+eale +p  l +nsG d    +s++ a+  k    + Gvd +++  + +  e  v++ l +k   i+lat     +l++d++i++
  MMETSP1174-20130828|35800_1  28 SEAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVSHTIEDPRDEAQLIFAVKPVIGSKQ-QGYEDYLSQLVAQACLTVMpDKDSgksPSVNPDAVRVVKLMGGNVMQSTVINGMVLPRGAE--GTISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFEQSGMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEH-KAGGKETGVDPKNSTIFaNATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMS 534
                  489999*****************************************************999999*****************************************************9877666667888999************6.567899************86665421247***************************99865..5678****************************************************************************************************************************99888877777899*************************************************************************************************99865.6778899***9998765278999*****************************976 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   1.6   5.5e-64   2.5e-61      16     524 ..      29     533 ..      20     539 .. 0.93

  Alignments for each domain:
  == domain 1    score: 205.6 bits;  conditional E-value: 5.5e-64
    TIGR02347  16 aalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki.kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee.....idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfiee..vknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesi.vaelkgiwdnysvkkqllssatviasqlllvdevlr 524
                  +a+  n++aak++++++ + +GP G  k++v+   +i +  d ++ll+e++iqhP+a+++a aa  q+   GdG+   v ++gell++a +l+++g+h   ++ G+++a  ++le+l+ +    +e+  d   l+ +++ ++  k ++ + d l++ v +a l++  d+++     ++   v +++++    ++ ++i+G+vl  Ga        v  + i +    +e e te   +++ ++a++  +  ++e k +++ +  i +              v++    i +++   +ak+g+++++   + ++ rl  ++G +al  +   tpe +G +  v+ +  g +k t  e+  +++ k  ti+++++ +  ++ ++ +  dG+ +++        v+Gaga e++l+++l+ee+++    ++ ++  f+eal v+P++l +nsG dv+  + kl +e++++++ +gvd +  + +  a+++g+ d ++ k  +++ at  a  +l vd+++ 
  MMETSP1174-20130828|35800_1  29 EAVYKNIEAAKAISEMVSSSMGPNGMNKLVVNHLNKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLPGMVShTIEDPRDEAQLIFAVKPVIGSK-QQGYEDYLSQLVAQACLTVMPDKDSgkspsVNPDAVRVVKLMGGNVMQSTVINGMVLPRGAEG--TISCVDSAKITIFGCGIESESTETSGTVLIRNADDMLNYNKTEEKALEEVIIAIANTG----------TTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFEQsgMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKAGGKETGVDPKNSTIFaNATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIM 533
                  67889******************************************************************************************************************965788999****************9.6799**************986654322345888899************************975..55677888888888899******************99999999999987655444332..........346666778*******************************************************************98445899***************************************************************************************************************9888765157889****************************986 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   4.9   1.7e-60   7.9e-58      22     514 ..      37     534 ..      21     538 .. 0.92

  Alignments for each domain:
  == domain 1    score: 194.2 bits;  conditional E-value: 1.7e-60
    TIGR02341  22 gaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl...kg.....stnleaiqiikklggklddsyldegfllekkigvnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkf..sgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegei.adlrklgivesyklkravvssaaeaaevllrvdniika 514
                   a a+ ++v s++gp gm+k+++     ++i+v+ d +t+l +  ++ paak++   +++q+ e gdg+   + +a ell+ a +l+ + +h   i++gy+ a++ +le l    v ++ ++ +   +l+   +  ++sk      d++++l  +a l +   k      s n +a++++k +gg++ +s + +g++l +     +   ++ aki i   +++++     g+ v + ++  + + +k+e + + e +  i + +  v++    i +    ++a+ g+m+++      + rl+  +g      +      ++gsc+++     g +k+  f  sg++  +  tivlr + q ++++ ers  d +a + +  +  + v g+g++e+ +a a+ eea+k++  +  ++  f+ al+ +p +l +n+g d + lv+kl a+h+ g +++g+d ++ +i a+ ++ g+v+ +  k + +  a++aa  +lrvd+ii +
  MMETSP1174-20130828|35800_1  37 AAKAISEMVSSSMGPNGMNKLVVNHL--NKIIVSSDCTTLLTEFEIQHPAAKMVALAAEMQNSEYGDGSNLCVSFAGELLHLAGQLLRQGVHQSEIVSGYKVALAKTLELLP-GMVSHTIEDPRDEAQLIFAVKPVIGSKQQG-YEDYLSQLVAQACLTVmpdKDsgkspSVNPDAVRVVKLMGGNVMQSTVINGMVLPRGAE-GTISCVDSAKITIFGCGIESESTETSGT-VLIRNADDMLNYNKTEEKALEEVIIAIANTGTTVLVSGGTISEMAAHFIAKHGLMSVKIQSKWDMRRLCATVGATALVRLGPATPEEMGSCHKVHVKEFGSKKVTIFeqSGMEDTKVATIVLRSSVQSVINDLERSCDDGIACIQHLCRRPHFVPGAGATEMQLATALREEANKTDSLDQYSIRKFGEALEVVPRMLGQNSGQDVTSLVSKLYAEHKAGGKETGVDPKNSTIfANATESGVVDLLCTKGSAIRLATDAAITVLRVDQIIMS 534
                  6889****************998665..59****************************************9999********************************999664.55666666666678899999*******866.5699*******9998644443112236799************************98654.345689*******************998.56788889999***********************************************999999*********99999999888899*******9999999997665559***********************************************************************************************************************99868999*******************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.59
# Mc/sec: 1230.41
//
Query:       MMETSP1174-20130828|35809_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1034.62
//
Query:       MMETSP1174-20130828|35807_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-29   98.1   0.0    1.5e-28   97.5   0.0    1.2  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
    0.00018   19.3   0.1    0.00028   18.7   0.1    1.4  1  TIGR00201 comF: comF family protein
    0.00053   17.5   0.0    0.00071   17.1   0.0    1.1  1  TIGR01091 upp: uracil phosphoribosyltransferase
     0.0038   14.8   0.2       0.37    8.4   0.1    2.6  2  TIGR00336 pyrE: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   1.5e-31   1.5e-28       2     161 ..      47     210 ..      46     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 1.5e-31
    TIGR01203   2 liseeqikarikelakeieeeyagkkelvvvgvLkGsilFladliralkvpvkvdfiavsSYgnsvessgevkilkdl.dedikdkdvLlveDivdtgltlkellellkar..kpks.lkivtlleKps.rrkvdvkvdfvgf.eipdefvvGyglDyaelyRnlp 161
                  +++e +++++++++a+eie++  g+k +v+ g+LkG+++Fl dl ++l+ p +v f+++sSY ++ e+s+ v +l+ + +++ ++++++lv++++d g+t++++++ l +    p+s + +++l++K+  +r  + ++d vg+ + pd ++vGyglD +++ R  p
  MMETSP1174-20130828|35807_1  47 IMTESELNRAVQRVAREIERQTVGEK-IVLCGILKGAYVFLHDLSQQLNRPNSVYFVEASSYSGQ-EQSDGVELLSRIvASKFEGRKIVLVDELLDNGKTMDTMTQHLMKTlgVPRSnILTCVLMSKNRpQRPKHWDADIVGIaDLPDVWLVGYGLDDNGTKRGWP 210
                  678999******************76.9***********************************99.555666666665156667******************999877654224665388999**99772577899******9569************99999765 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.8e-07   0.00028     137     180 ..     114     158 ..      42     167 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.8e-07
    TIGR00201 137 knlenafklkvkevqgrkivlvDDvvttGatlaeiaklllk.lga 180
                    +e   ++  ++++grkivlvD+++  G t+  + + l+k lg+
  MMETSP1174-20130828|35807_1 114 DGVELLSRIVASKFEGRKIVLVDELLDNGKTMDTMTQHLMKtLGV 158
                  33444445556679************************9997776 PP

>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.9e-07   0.00071      45     148 ..      45     155 ..      21     174 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 6.9e-07
    TIGR01091  45 dleleevevetplgeak...akelkdkkvvlvpiLrAglglvegvlkllpe.akvglvglk..Rdeetlkievyysk.lpedieerevivlDPmlAtGgtvvealellkek 148
                  +l + e e++  +++++    ++  ++k+vl++iL+ +  ++  + + l++  +v++v ++    +e  + ++ +s+ +++++e+r+++++D +l  G+t+ ++ ++l+++
  MMETSP1174-20130828|35807_1  45 KLIMTESELNRAVQRVAreiERQTVGEKIVLCGILKGAYVFLHDLSQQLNRpNSVYFVEASsySGQEQSDGVELLSRiVASKFEGRKIVLVDELLDNGKTMDTMTQHLMKT 155
                  5555555555555544311034556788**************9999988872568888654113444455555555516788999*****************999998775 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00036      0.37      21     126 ..      34     147 ..      25     167 .. 0.70
   2 ?    3.6   0.0     0.011        11      61      93 ..     216     248 ..     209     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00036
    TIGR00336  21 kSpyyvdl...klantgkelanliaeliaalvkdelefdviaGpalkg.iPiaaavsvklakpeg..diqllivRkeaKdhGeg..gkivGelkegkkvvvveDvittGtsile 126
                   S+y+ ++   kl+ t+ el +++++++ ++ ++ +  + + +  lkg       +s +l++p+    +++     ++   G +    iv +  eg+k+v+v+ ++  G+ +  
  MMETSP1174-20130828|35807_1  34 SSTYFNEVksyKLIMTESELNRAVQRVAREIERQTVGEKIVLCGILKGaYVFLHDLSQQLNRPNSvyFVEASSYSGQEQSDGVEllSRIVASKFEGRKIVLVDELLDNGKTMDT 147
                  4555555433368999999999999999999999995555555555550556678899999995555333333333333334332368999999**********9999998765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.011
    TIGR00336  61 palkgiPiaaavsvklakpegdiqllivRkeaK 93 
                  p+ +g+P+aaa ++ +  +eg    + +R++ K
  MMETSP1174-20130828|35807_1 216 PKCAGVPLAAADAIFSGSEEGAAMHASIRQRIK 248
                  6789**************999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 791.93
//
Query:       MMETSP1174-20130828|35811_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 809.53
//
Query:       MMETSP1174-20130828|35814_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1174-20130828|35812_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   10.2   0.0      0.029    9.9   0.0    1.0  1  TIGR00461 gcvP: glycine dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00461  gcvP: glycine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     7e-06     0.029     701     784 ..      88     171 ..      76     182 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7e-06
    TIGR00461 701 Gpgmgpigvkshlapflpktdlvsvveleg.esksigavsaapyGsasilpisymyikmmGaeGlkkasevailnanylakrlkd 784
                  G  +g i v s l++ +p    + +v++ g e+++ g +++  +   sil+ ++ yi  +G++ +++  ++   +   +akrl++
  MMETSP1174-20130828|35812_1  88 GTKGGAIVVGS-LITLIPFVTYTGLVNVGGyEEQTAGNLASGSFVLLSILAWTFSYIFRVGNKEMTYGKQLKDYEDAVIAKRLEE 171
                  44556666655.5555555555666666652567899*********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 989.92
//
Query:       MMETSP1174-20130828|35813_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-29  100.4   1.2    2.8e-29  100.0   0.8    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.7e-26   91.2   0.8    2.3e-26   90.8   0.5    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.5e-25   86.3   0.3    7.1e-25   85.9   0.2    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.1e-19   68.8   1.0    1.4e-19   68.4   0.7    1.1  1  TIGR02415 23BDH: acetoin reductases
    1.7e-19   68.1   0.3    2.3e-19   67.7   0.2    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
      8e-19   65.8   0.3      1e-18   65.4   0.2    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    7.6e-18   62.7   1.3    7.1e-17   59.5   0.9    1.9  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.8e-17   60.9   0.4    3.8e-17   60.4   0.3    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.8e-11   40.3   0.2    3.5e-11   40.0   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.6e-10   38.5   0.3    2.2e-10   38.0   0.2    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    5.5e-10   36.8   0.4    8.3e-10   36.3   0.3    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.7e-05   21.3   0.3     0.0039   14.2   0.0    2.2  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00012   19.5   0.1    0.00019   18.8   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0013   15.5   0.0     0.0022   14.8   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0016   15.9   0.0      0.002   15.5   0.0    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
  ------ inclusion threshold ------
      0.012   12.5   0.0       0.02   11.9   0.0    1.4  1  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.017   11.9   0.6      0.028   11.2   0.3    1.5  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.8   1.1e-31   2.8e-29       4     188 ..      43     231 ..      40     236 .. 0.90

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 1.1e-31
    TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGi..qhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLv 188
                  a++tGa+ Gig+aia+ela +G +vv+ + ++ +++a+++e++++  ++ev+++++d    ++ a+   a   +  ++ iL+nn G   ++ +p  e + +k  ++ ++n++s++ +++  lp m  ++ G i+n++s+ g +a ++ + Y aaK  +  l+ +lA Ev  +g+ +++  P yv+t+L 
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTKypSVEVATIAIDYGCFDDAAKEKVAEFVKSNNVGILINNVGAsyKFARPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLA 231
                  89***************************99888888777776652278888999999888877765555556678999*****98633689**********************************************************************************************995 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.5   9.3e-29   2.3e-26       1     186 [.      43     231 ..      43     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 9.3e-29
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkea..gvkaaavkldvsdeee.vkelveeveeelgeidilvnnAGitrD..klllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmt 186
                  a++tGa+ giGkaia++la++g +vv+ +r++ +k++++++e+k +   v++a++++d    ++ +ke v+e+++  +++ il+nn G +    +   ++   + +e  ++n++++  +t+  l +m+ k+sG+i+n+ss +g    +  a Y+a+K+ +  l+ sla E+  +++ v + +P +++t++ 
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELASKGLSVVLISRTQ-SKLDAVQTEIKTKypSVEVATIAIDYGCFDDaAKEKVAEFVK-SNNVGILINNVGASYKfaRPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLA 231
                  79**************************7755.679999999998522678888888887765515677777776.689*********876411456777778888888999***************************************************************************9986 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.2     3e-27   7.1e-25       3     188 ..      43     231 ..      41     243 .. 0.89

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 3e-27
    TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvap.neerakewlqekevegfdvavvkadvssfeea.kaavakveaelGpvdvlvnnaGitrd..avfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemv 188
                  a++tG++ GiG+ai+++la++G  vv   ++  +  a + + +++    +va +  d   f++a k++va+   +  +v +l+nn G        ++ +++++ +e+ + n++s   +t+ ++ +ml ++ G i+n+ss  G +     a ysaak  +  ++ +la e+  kgv v v +P y++t++ 
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELASKGLSVVLISRTqSKLDAVQTEIKTKYPSVEVATIAIDYGCFDDAaKEKVAEFV-KSNNVGILINNVGASYKfaRPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLA 231
                  89***********************998887344566777778899999************986156677765.5679*********987522569*******************************************************************************************986 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.7   5.8e-22   1.4e-19       3     188 ..      43     231 ..      41     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 5.8e-22
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek..gtkavavkldvsdkseveeaveqavekl...GeldvlvnnaGva..lvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemr 188
                  a++tGa+ GiGkaia+ La  G++v++    + ++ +++ e+k k    +   + +d      +++a ++ v+++    ++ +l+nn G +  +  p +e++  ++ +l ++nv ++++        +   k+ G i+n +s ag +++p l+ ys++k  v+ l  + a e+  kg+ v   +P  v t++ 
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTKypSVEVATIAIDYGC---FDDAAKEKVAEFvksNNVGILINNVGASykFARPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLG-KKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLA 231
                  9****************************9999999999999877223334444444433...33333333333311157889****997522789***********************88877766654.4569**************************************************99999876 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.2   9.3e-22   2.3e-19       3     190 ..      43     220 ..      41     239 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 9.3e-22
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLn 190
                  +++tGa  G+G+++a ela+    +g  +vL++R +  L   + ei+++ ++  v + ++d +   d     + + e  k ++    +linn G+ ++ ++  +el D+ +v + +++nv s v +t +ll  +         +vn+ss +  ++ + +a Y a+k + + +   La e k + v v  
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELAS----KGLSVVLISRTQSKLDAVQTEIKTKYPSVEVATIAIDYGCFDD--AAKEKVAEFVKSNNVG--ILINNVGASYKFARPWHEL-DAAKVTELNELNVSSTVWMTHLLLPSMLG--KKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKgKGVDVQV 220
                  79*****************9....8999************************************995..5567899999999985..99***************98.8999*******************999873..44568************************************9976666654 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.2   4.3e-21     1e-18       5     189 ..      42     230 ..      38     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 4.3e-21
    TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkae..avavditdrasv.daavaaaeealgpvdvlvnnag..wdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtal 189
                   a++tg + gig ai + +a +g  v ++  ++   + v ++i+ k  + e  ++a+d    +   +  va        v +l+nn g  +   +p+ + + a+   l  +n+  +++m h +l+ m+ +k+g ivn++s a+r  +   a y+a kg +  +s +la e   +g+ v+v  p    t l
  MMETSP1174-20130828|35813_1  42 WAMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTKYPSVEvaTIAIDYGCFDDAaKEKVAEF-VKSNNVGILINNVGasYKFARPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKL 230
                  589*****************************************99877661145666554433303333333.3446799*****774367889*************************************************************************************9998777765 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.9     3e-19   7.1e-17       3     226 ..      40     253 ..      38     272 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 3e-19
    TIGR03971   3 GkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrklee.lravveegveefGrldvvvanaGv.lsygraf.elseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpa 226
                  G  a+itGa+ G G+a a  la++G  ++ i   ++         a + ++++    ve     v++   d   +++  ++ v+e v+    + ++++n G    ++r + el++ +  ++ ++n+  +    +  +P ++ +k  G+i+ +ss+ag +a+p la y+aak  +  l  +la e+   g+ v +  P  v t++ +   +  +++ ++++a+a +  
  MMETSP1174-20130828|35813_1  40 GEWAMITGATDGIGKAIAHELASKGLSVVLISRTQSKL------DAVQTEIKTKYPSVE-----VATIAIDYGCFDDaAKEKVAEFVKS-NNVGILINNVGAsYKFARPWhELDAAKVTELNELNVSSTVWMTHLLLPSMLGKK-SGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLASLRKTSLFVVSEKTYAKACCRW 253
                  7789*********************9999876555443......455667777666776.....4555566666654145556665544.5799*******73467876549**************9876666899******99.899********************************************************99888887888888888887655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.3   1.6e-19   3.8e-17       5     189 ..      40     229 ..      36     238 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 1.6e-19
    TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal..Grkflslkadlade.eaakalvdeaveeagkidilvnnaGiirred..avefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletn 189
                  G  a++tGa  G+G++ia  la+ G  +v ++  +s+l+  q +++++    ++ ++ +d     +aak+ v+e+v++ +++ il+nn G   +      e+  ++  ++ ++n+ +   +++ +   +l +  +g i+n++s    q    ++ y+a+k  v  l+ +la e   kg++v   +P y++t+
  MMETSP1174-20130828|35813_1  40 GEWAMITGATDGIGKAIAHELASKGLSVVLISrtQSKLDAVQTEIKTKypSVEVATIAIDYGCFdDAAKEKVAEFVKS-NNVGILINNVGASYKFArpWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKK-SGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTK 229
                  889*************************99983244556666666655115567788888754414555667777765.59*********87654211455666666666678899999***********987.9******************************************************986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   1.5e-13   3.5e-11     416     597 ..      42     224 ..      26     254 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.5e-13
    TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtd.eeavkaafaevalayGGvdivvnnaGia..vskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                   a++tG++ GiG+++a  l+++G  vvl+   + +++av+ e++ k+ + ++ ++ +d    ++a k+ +ae +     v i++nn G +   ++p +e  + +     ++++     +++     +  ++ +g +v ++s  +  a++    ysaak   + l   la e   +g+ v   +P 
  MMETSP1174-20130828|35813_1  42 WAMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTKYPSVEVATIAIDYGCfDDAAKEKVAEFVK-SNNVGILINNVGASykFARPWHELDAAKVTELNELNVSSTVWMTHLLLPSMLGKK-SGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPL 224
                  689******************************************************987515566666666554.5678899999887522689999999888777778888888888888887777665.567******************************************99877775 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.2   9.2e-13   2.2e-10       5     191 ..      40     230 ..      36     247 .. 0.74

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 9.2e-13
    TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdk.....vvgvegdvrllddhkeavarcveafgk...ldtlipnagi.wdystalvdipddridea.fdevfeinvkgyllavkaalpalvasrgsviftvs.nagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                  +e +++tg + g+g+a+ +   ++g  v ++ +++ +l++++++   k     v +++ d   +d   +a+++ v++f k   + +li+n+g  + ++      p + +d+a   e+ e+nv + +   +  lp ++  + ++i  +s  ag  ++   a y+aak  v  l   laye+  + v v+  +p  ++t l
  MMETSP1174-20130828|35813_1  40 GEWAMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTKypsveVATIAIDYGCFD---DAAKEKVAEFVKsnnVGILINNVGAsYKFAR-----PWHELDAAkVTELNELNVSSTVWMTHLLLPSMLGKKSGAIVNMSsAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKgVDVQVQTPLYVTTKL 230
                  6889**********************************998877666511111444555555555...4555555555542227789****97233444.....5555555436899******************99998887777761578888888999*****************985432666666666666655 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.3   3.4e-12   8.3e-10       2     187 ..      44     231 ..      43     244 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3.4e-12
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiae..hgayygv.vlnagiardaafpalseedwdavie...tnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemv 187
                  ++tga+ gig+aia +la++g  + + + + +++ +++ ++i+++  ++++  + +       ++ ++++ae  +    g+ + n g +   a p   e d   v e    n+ +    +  l++p +  +k g i+ ++s +g        +ysaak  +   + +la e+  + + v+  +p  + t++ 
  MMETSP1174-20130828|35813_1  44 MITGATDGIGKAIAHELASKGLSVVL-ISRTQSKLDAVQTEIKTKYPSVEVATIAIDYG-CFDDAAKEKVAEfvKSNNVGIlINNVGASYKFARPWH-ELDAAKVTElneLNVSSTVW-MTHLLLPSMLGKKSGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTPLYVTTKLA 231
                  79*********************977.56678999999999999977766655444322.2222222223321123345651567888888888753.33333333300033333333.45577888888999**********************************************9999988888765 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.6e-05    0.0039       4      41 ..      43      81 ..      41     156 .. 0.76
   2 !    5.2   0.0    0.0085       2.1     152     203 ..     172     223 ..     165     230 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.6e-05
    TIGR02685  4 alvtGaakriGrsiavklhqeGyrvvlhyr.rsaeaass 41
                 a++tGa+  iG++ia +l ++G  vvl  r +s+ +a++
  MMETSP1174-20130828|35813_1 43 AMITGATDGIGKAIAHELASKGLSVVLISRtQSKLDAVQ 81
                 89**********************998655155555543 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0085
    TIGR02685 152 nlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvap 203
                  + +ivn+  a   q  +  + y+ ak  ++ l+ s a e+  +++ v   +p
  MMETSP1174-20130828|35813_1 172 SGAIVNMSSAAGRQATPLLAQYSAAKGYVQNLSSSLAYEVKGKGVDVQVQTP 223
                  568*************************************999998876555 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     8e-07   0.00019       6     123 ..      43     167 ..      38     177 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 8e-07
    TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslg..lpkdsytilkldlasld.svrkfveqfresgrsldalvcnaavylpllk.....eplfsadgyelsva.tnhlghfllsnl 123
                  ++itga+ g+g a a+ l++kg   vv+  r   k + +  ++   +p+ + + + +d + +d + ++ v++f +s+ ++ +l+ n    +  ++     +    ++  el v+ t  + h+ll  +
  MMETSP1174-20130828|35813_1  43 AMITGATDGIGKAIAHELASKG-LSVVLISRTQSKLDAVQTEIKtkYPSVEVATIAIDYGCFDdAAKEKVAEFVKSN-NVGILINNVGASYKFARpwhelDAAKVTELNELNVSsTVWMTHLLLPSM 167
                  78********************.9***********9999887751166777788999**998725678999999886.5677777754433322211111223334445666642556667666655 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   9.1e-06    0.0022       3      40 ..      43      80 ..      41      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 9.1e-06
    TIGR03466  3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnl 40
                 +++tGat  +G+a++++l+++G +v ++ r++s+   +
  MMETSP1174-20130828|35813_1 43 AMITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAV 80
                 79*******************************96554 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.5e-06     0.002       2      45 ..      44      87 ..      43     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.5e-06
    TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekkesake 45
                 +itG+t  iG+a+++el +kg +vv+++r+++k  + ++e +++
  MMETSP1174-20130828|35813_1 44 MITGATDGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKTK 87
                 79****************************99665555444433 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.02     119     162 ..      42      86 ..      30     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.1e-05
    TIGR00507 119 rvliiGAG.GaakavaleLlkadkeviiaNRtvekaeelaerlqe 162
                   ++i GA  G +ka+a eL++++ +v+++ Rt++k  ++  ++++
  MMETSP1174-20130828|35813_1  42 WAMITGATdGIGKAIAHELASKGLSVVLISRTQSKLDAVQTEIKT 86 
                  57889995599************************9877777665 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00012     0.028     126     220 ..      24     131 ..       8     171 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    TIGR02824 126 Tvwsnlfelak.lka.getvLihggasGiGtt.aiqlakalgakvlvtagsdekleaae.kLG........advainyreed..FvevvkeetegkGvdvilDivggsy 220
                  T+++  ++ +k lk+ ge+++i g++ GiG + a  la+  g +v+   +++ kl+a++ ++         a++ai+y   d    e v e  +++ v +++  vg+sy
  MMETSP1174-20130828|35813_1  24 TIYKFFLRPGKnLKKyGEWAMITGATDGIGKAiAHELAS-KGLSVVLISRTQSKLDAVQtEIKtkypsvevATIAIDYGCFDdaAKEKVAEFVKSNNVGILINNVGASY 131
                  5555555555424434**************862566665.577777777777777744313321122222277888887544114566777888888999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 920.99
//
Query:       MMETSP1174-20130828|35816_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.6   0.0      0.029   12.2   0.0    1.2  1  TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00640  acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.1e-06     0.029      70     111 ..      45      89 ..      20     100 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-06
    TIGR00640  70 vPelieeleklGredilvvv...GGviPeedveelkeaGvaevfg 111
                   P+li+ ++++G++d +vv+   GG++  + ++ l+++   +vfg
  MMETSP1174-20130828|35816_1  45 EPKLIDVMKDMGLDDAFVVAlakGGILTVDAFAALEDEDLRDVFG 89 
                  59*************99986667******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 889.70
//
Query:       MMETSP1174-20130828|35818_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.5   1.5     0.0032   15.1   1.0    1.1  1  TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain


Domain annotation for each model (and alignments):
>> TIGR02777  LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.0   7.7e-07    0.0032      83     146 ..      16      78 ..       6      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.7e-07
    TIGR02777  83 dfeGtiPkGeyGaGkvivwdkGtyeaegdaekalkkGklkfeleGeklkGeyalvrlkregeke 146
                   f+G+  k ++  G+  +++ Gty+ +  ++k + kG +kfe +G   +Gey++++  +ege+e
  MMETSP1174-20130828|35818_1  16 IFDGEWEKNKFIKGEWKLYEAGTYTGTFTNDKPIGKGTFKFE-NGIIQNGEYKVIKETKEGEEE 78 
                  59999************************************9.89999**********9*9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 464.24
//
Query:       MMETSP1174-20130828|35821_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 589.24
//
Query:       MMETSP1174-20130828|35820_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1960.43
//
Query:       MMETSP1174-20130828|35822_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1174-20130828|35825_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-21   72.3   2.3    9.4e-21   71.7   1.6    1.2  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit
  ------ inclusion threshold ------
       0.53    7.8   4.9        1.1    6.8   3.4    1.5  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17


Domain annotation for each model (and alignments):
>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   1.6   4.6e-24   9.4e-21      21     147 ..      55     189 ..      47     191 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 4.6e-24
    TIGR00983  21 leGanksRgwtedlcfgtGtayltGlaiGalvGlreGlketesisttklrlnriLnsvtrrGallgnslGilaLvYnainslieaargke........dvansvaAGaltGalykstrGlr.aiavssalvataag 147
                  l+ + k R+ +e+l+f  G ++l+G++iG+l G  +Gl++  s s +k+r+n +Ln  ++ G+ +gn +G++a  Y++i+ l++ a+ +e        + ++ v  G  tG+lyk+t+    +i v++a++++++g
  MMETSP1174-20130828|35825_1  55 LDYDIKGRALHEKLFFNSGMSFLGGSVIGTLYGGVTGLRNATS-SRSKVRMNALLNGASKFGSRFGNGMGVIAFYYTTIEKLVDMAQVEEtlgiehttGIISPVLSGCCTGMLYKCTNARPaTILVAGAIGGAISG 189
                  45566899********************************987.679**********************************9998765432211111145567899***********9743145678888888776 PP

>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.4   0.00051       1.1      17      72 ..      72     126 ..      67     192 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00051
    TIGR00980  17 iGgafamGtiGGaifqaikGfrnspkGeklvgalaaiktrapvlGgnfavwGGlfs 72 
                   G +f  G + G+++ ++ G rn++   + +  ++a+   a+  G++f+   G+ +
  MMETSP1174-20130828|35825_1  72 SGMSFLGGSVIGTLYGGVTGLRNATSS-RSKVRMNALLNGASKFGSRFGNGMGVIA 126
                  5788999****************9875.5566788888899999999987666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 837.31
//
Query:       MMETSP1174-20130828|35823_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1414.17
//
Query:       MMETSP1174-20130828|35824_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.4   0.0    1.3e-05   22.4   0.0    2.1  3  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2      0.11   4.5e+02     100     132 ..      14      46 ..       5      64 .. 0.36
   2 !   22.4   0.0   3.3e-09   1.3e-05       8      84 ..      65     140 ..      59     148 .. 0.84
   3 ?   -4.7   0.6      0.55   2.3e+03     118     139 ..     454     475 ..     445     497 .. 0.46

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.11
    TIGR00601 100 satpasvaekksaaPasaveeessaeeeatata 132
                  s+ +a++ae+k a+  sa++    +++++ ++a
  MMETSP1174-20130828|35824_1  14 SSSAAALAEAKRASFFSAAALAVATRDSSFSAA 46 
                  233333333333333222222222222222222 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3.3e-09
    TIGR00601   8 lkqqkfkidlepdetvkelKekiesekgkdayevaqqkLi....yaGkiLsDdktvkeykikekdfvvvmvskkKavkaka 84 
                   ++qkf i+++p + v elK +i s  g   ++v++qkL     + G+ L Dd t +++k+k  + ++++++ + +  ak+
  MMETSP1174-20130828|35824_1  65 WQKQKFDIEINPTNSVVELKAQIFSLTG---VPVERQKLTcpkaWKGQ-LTDDMTFANCKLKA-GLLIMLIGSADTLAAKV 140
                  69**************************...********744336676.89**********96.56777777777776665 PP

  == domain 3    score: -4.7 bits;  conditional E-value: 0.55
    TIGR00601 118 veeessaeeeatatalesedts 139
                  +ee++ aee++  + +e ed  
  MMETSP1174-20130828|35824_1 454 AEESKAAEEKPSDPMEEDEDED 475
                  3333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1467.11
//
Query:       MMETSP1174-20130828|35830_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.3   0.5       0.07    9.8   0.1    1.9  2  TIGR01932 hflC: HflC protein
  ------ inclusion threshold ------
      0.038   11.9   0.0      0.065   11.1   0.0    1.4  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   3.4e-05      0.07     193     242 ..       7      55 ..       2      60 .. 0.78
   2 !    3.3   0.1    0.0031       6.4     217     267 ..      54     104 ..      47     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.4e-05
    TIGR01932 193 GievvDvrikkiklsdelsesiynRmrsEreaiArkyRsqGeekaeelra 242
                  Gi + Dv++k ikl+  l+++i  + ++E+e+   ++ ++ +e +e  r 
  MMETSP1174-20130828|35830_1   7 GIILEDVLLKAIKLPALLTSAIETKAQAEQESARMEFVLT-KETKEAERK 55 
                  89999************************99965555555.444444444 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0031
    TIGR01932 217 RmrsEreaiArkyRsqGeekaeelrakaekEvvkiLseAereariikgegd 267
                  R + E   iA+ ++ + e+  e+l+a    E ++ L+e e++  ++ g+g 
  MMETSP1174-20130828|35830_1  54 RKTIEASGIAQFQKIVSEGISENLLAWKGIEATEKLAESENSKIVMMGNGK 104
                  66678889999999999999999999999999999*999999999988875 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.2e-05     0.065     139     175 ..      71     107 ..      51     113 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.2e-05
    TIGR01489 139 hgcssspkglcKgkvieklsekkkekivyiGDgvsDv 175
                  +g+s++      ++  ekl e+++ kiv++G g++D+
  MMETSP1174-20130828|35830_1  71 EGISENLLAWKGIEATEKLAESENSKIVMMGNGKGDL 107
                  5555555555558999********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 578.72
//
Query:       MMETSP1174-20130828|35827_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-44  149.5   0.4    3.5e-44  149.1   0.3    1.2  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    3.7e-33  112.9   0.1    6.3e-33  112.2   0.1    1.4  1  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    8.4e-29   98.8   0.3    1.8e-28   97.7   0.2    1.5  2  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    4.4e-21   73.4   2.2    5.9e-21   73.0   0.8    1.7  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    3.7e-18   63.5   0.3    1.2e-17   61.8   0.0    2.0  2  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    7.1e-18   63.1   0.6    1.4e-17   62.1   0.4    1.4  1  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
      2e-17   61.3   0.3    1.3e-08   32.5   0.0    2.3  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    1.3e-15   55.6   0.6    4.9e-15   53.7   0.4    1.8  1  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    2.2e-14   51.4   0.2    3.6e-14   50.7   0.1    1.3  1  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    3.4e-14   50.9   2.3    7.4e-14   49.8   0.2    2.1  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    1.3e-11   42.3   0.1      2e-11   41.7   0.1    1.3  1  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    1.5e-10   38.7   0.1    7.1e-05   20.2   0.0    2.3  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    9.3e-07   26.3   1.3    0.00047   17.5   0.0    2.9  3  TIGR02859 spore_sigH: RNA polymerase sigma-H factor


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.3   1.1e-46   3.5e-44      17     298 .]     131     418 ..     122     418 .. 0.87

  Alignments for each domain:
  == domain 1    score: 149.1 bits;  conditional E-value: 1.1e-46
    TIGR02997  17 taeeeielarqvqellaleekkeeleeqlekepskeelakavdls.ekelkkalkqgrrAkeklikanLRLvvsvAkkYqk..........rglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklg.repseaelaealeleveqvrellkaarkp.vsLdakvGkeedtelgdlledeeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                   +++ei l r+++   +l+e  + le++le+ ps ee+ + ++ + ++el ++l+ gr+Ak++l++ n  Lv sv +kY k            +e  D++qeG lGl +a+ekFd ++G +fstyA+ W+   + r + ++sr + +P  +++  +k++ v++e+  + +  +   +elaea++++ ++ r+  ++ +++ vs da++ +      ++++e+ +++ +e    ++   d+e++l++ L+++e +vlrlrfGl++e +++ +ei+++l++ re  r+i +k+++klr
  MMETSP1174-20130828|35827_1 131 AQKNEIILCRRIKIENTLQECYKLLERRLERPPSPEEWCAVAGFKtTQELMDNLEAGRQAKSQLVSDNFGLVQSVVRKYVKgarsqmqthgSRVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFM-KSSRLVHVPFAVQDLGKKIQSVEKEVLPDGKvESFELNELAEAFNVTITKARSARRSYQQSvVSYDAPIDET-----HNFIEEYSASESEG--AQVTAGDIEAVLRNiLSSQEISVLRLRFGLDGEASRSYREISTTLGIGREMSRRICQKSFEKLR 418
                  5789************************************9997615789*****************************753332222222468999***************************************76.689*********************98876551556789***************99988776379****9543.....45777755554444..5678899***99987899********************************************98 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.1     2e-35   6.3e-33       1     235 [.     190     428 ..     190     431 .. 0.87

  Alignments for each domain:
  == domain 1    score: 112.2 bits;  conditional E-value: 2e-35
    TIGR02393   1 akkklvesnlrlvvsiakkyln........rG..lsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrep.teeelaeklgleaekvkeikkl.akepvslekpigeeedselgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskklkd 235
                  ak++lv+ n+ lv s+ +ky++         G  ++ +d++qeG +Gl++a ekfd  +g +fstyat W+   + r +   +r + +P  + +  +k++ +e+++l + + e+ + +elae++++++ k ++ ++  ++  vs ++pi e      ++fie+ +   ++++   +++  ++e+vl+  ls +e +vl+lr+Gl+ + ++   e+++++++ re  r+i +k + klr+++ ++ l d
  MMETSP1174-20130828|35827_1 190 AKSQLVSDNFGLVQSVVRKYVKgarsqmqtHGsrVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFM-KSSRLVHVPFAVQDLGKKIQSVEKEVLPDGKVESfELNELAEAFNVTITKARSARRSyQQSVVSYDAPIDET-----HNFIEEYS---ASESEGAQVTAGDIEAVLRnILSSQEISVLRLRFGLDGEASRSYREISTTLGIGREMSRRICQKSFEKLRNTEAARALMD 428
                  799*****************853322222223335678***************************************87.579***********************999888873679**************99876156678******765.....579*9965...556667788999******9889*************************************************999888865 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   6.6e+02     133     158 ..     146     171 ..     139     186 .. 0.70
   2 !   97.7   0.2   5.6e-31   1.8e-28      45     275 ..     188     422 ..     174     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.1
    TIGR02394 133 nvvlraarklekkldreasveevael 158
                  n++  + + le++l+r++s+ee  + 
  MMETSP1174-20130828|35827_1 146 NTLQECYKLLERRLERPPSPEEWCAV 171
                  56666778899999999999996554 PP

  == domain 2    score: 97.7 bits;  conditional E-value: 5.6e-31
    TIGR02394  45 vearkkmiesnlrlvvkiakkyv..........nrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlra.arklek.kldreasveevaelldkpvedvskll.klnekiasldapldedsekslldlladekseePeelvqnedlkelieallaelnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkrile 275
                   +a+ +++  n+ lv ++ +kyv          ++ ++  d+++eG lGl++a ekfd +rG rfstyat W+   + r  m+ +r++ +P  v ++l + +++ ++++    + +    +e+ae+ + ++ + ++   +++++++s dap+de  ++ + +  a e+     ++v+  d++ +++++l+    +e  vl  rfGl +       e+++ lg+ re  r+i +++++kl+++ +
  MMETSP1174-20130828|35827_1 188 RQAKSQLVSDNFGLVQSVVRKYVkgarsqmqthGSRVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGR-FMKSSRLVHVPFAV-QDLGKKIQSvEKEVLPdGKVESFELNELAEAFNVTITKARSARrSYQQSVVSYDAPIDET-HNFIEEYSASES---EGAQVTAGDIEAVLRNILS---SQEISVLRLRFGLDGEASRSYREISTTLGIGREMSRRICQKSFEKLRNTEA 422
                  5799999**************9833222222112346678*************************************99.6899*******875.78888777614444441333556789***********99987526999*********864.445555555444...3579999****99999875...6899*******************************************9755 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.8   2.5e+02      81     132 ..     138     189 ..     132     192 .. 0.76
   2 !   73.0   0.8   1.9e-23   5.9e-21       3     225 ..     189     420 ..     186     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.8
    TIGR02980  81 vpRrlkelaakikkateeLtqklgrePtveeiaeelevs.eeevvealeaaks 132
                  + Rr+k +++++++  + L ++l+r P+ ee  +  + + ++e +  lea+++
  MMETSP1174-20130828|35827_1 138 LCRRIK-IENTLQECYKLLERRLERPPSPEEWCAVAGFKtTQELMDNLEAGRQ 189
                  567776.6788999999999*******99999888887524677777777765 PP

  == domain 2    score: 73.0 bits;  conditional E-value: 1.9e-23
    TIGR02980   3 eareklvelnlkLvesiarrf........rsrgee..leDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkatee.LtqklgrePtveeiaeelevseeevvealeaaksysassldasvedddgdeialldtlgeedeeleeveeklalkellakLdererrilllrf....fedktQseiaeelGiSQmqvSRlekralkklree 225
                  +a+++lv+ n  Lv+s++r++        +++g++    D+vQ g++GL++a ++fd++rg +Fstya   +   + rf++ +   v+vp  +++l++ki+++++e L +    + + +e+ae+ +v+   +++a +a +sy++s +   +    +++   +++ +++++e  +v+   +   l + L+++e ++l lrf      +++  ei+ +lGi      R+ +++++klr++
  MMETSP1174-20130828|35827_1 189 QAKSQLVSDNFGLVQSVVRKYvkgarsqmQTHGSRveSTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKSSR-LVHVPFAVQDLGKKIQSVEKEvLPDGKVESFELNELAEAFNVT---ITKARSARRSYQQSVVSYDAP--IDETHNFIEEYSASESEGAQVTAGDIEAVLRNILSSQEISVLRLRFgldgEASRSYREISTTLGIGREMSRRICQKSFEKLRNT 420
                  78999***************9333222111233432246******************************************988.****************987661666677888999999999997...777888888888777766655..55677778888888888777776655445556799***********44433568899**********99999*********985 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.5     8e+02      85      92 ..     141     159 ..      84     167 .. 0.56
   2 !   61.8   0.0   3.9e-20   1.2e-17       2     163 ..     190     419 ..     189     420 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.5
    TIGR02937  85 e...........keeeele 92 
                              k+ e+++
  MMETSP1174-20130828|35827_1 141 RikientlqecyKLLERRL 159
                  1333333444444444444 PP

  == domain 2    score: 61.8 bits;  conditional E-value: 3.9e-20
    TIGR02937   2 aleqliesylplvykvarkylgds..........ldaeDlvqegflglikaldkfdpe..ssfktyaysvirnsiidalrrkrelkvtneveiske.........................................................keeeeledeedrpeeqeeaeelrerleqale.kLperereilklry....leglslkeiAeelgisqetvsrilkraikkLkk 163
                  a +ql+  +  lv +v+rky++            ++  D+vqeg+lgli+a +kfd +   +f+tya+ ++ +++ ++++++r l     v++  +                                                         ++e  +++ee + +e+e a+    ++e +l+  L+ +e  +l+lr+     +  s++ei+  lgi +e  +ri ++  +kL++
  MMETSP1174-20130828|35827_1 190 AKSQLVSDNFGLVQSVVRKYVKGArsqmqthgsrVESTDIVQEGVLGLIHAAEKFDADrgIRFSTYATIWVNSYVGRFMKSSR-L-----VHVPFAvqdlgkkiqsvekevlpdgkvesfelnelaeafnvtitkarsarrsyqqsvvsydapIDETHNFIEEYSASESEGAQVTAGDIEAVLRnILSSQEISVLRLRFgldgEASRSYREISTTLGIGREMSRRICQKSFEKLRN 419
                  66899999999********944444555555556999*********************9999****************99776.2.....222222333666677777777777777777777777777777777777777777777666766666666666669******************9667************77766799***************************96 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.4   4.4e-20   1.4e-17       8     229 ..     186     419 ..     180     420 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 4.4e-20
    TIGR02885   8 gdkeardklveenlrlvssivkrfln........rG..yeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddgiikvsrslkelakkirk.ekeelakklerePtieelaealglekeevvaalesakslqslydtvheddgdpillldkiadegeeesdllekialkealkk.ldererqiillryfkd....ktqtevakilGisqvqvsrlekkvlkklke 229
                  + ++a+ +lv  n  lv+s+v+++++        +G   e  d+ q G +Gl+ a +kfd +  ++fstya   +   + rf++   +++v  ++++l+kki+  eke l      +  ++elaea +++  +   a  s ++    yd+  ++  +   ++++ + + e+e   +    ++ +l++ l ++e  ++ lr+  d    ++  e++ +lGi +    r+ +k ++kl++
  MMETSP1174-20130828|35827_1 186 AGRQAKSQLVSDNFGLVQSVVRKYVKgarsqmqtHGsrVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKSSRLVHVPFAVQDLGKKIQSvEKEVLPDGKVESFELNELAEAFNVTITKARSARRSYQQSVVSYDAPIDETHN---FIEEYSAS-ESEGAQVTAGDIEAVLRNiLSSQEISVLRLRFGLDgeasRSYREISTTLGIGREMSRRICQKSFEKLRN 419
                  56899******************9853322222234225778************************************************************87267778887778899***********999999998888888888886655544...57777776.45555556666777776537889999******877333356789*********9999*****9999997 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.1e-11   1.3e-08      39     119 ..     181     270 ..     174     288 .. 0.79
   2 !   26.6   0.1   2.6e-09   8.3e-07     162     224 ..     356     419 ..     344     421 .. 0.89

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 4.1e-11
    TIGR02846  39 lerlkeGdeearnvliernlrlvahivkkfen........tgk..dvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllra 119
                  +++l+ G ++a+++l+  n+ lv  +v+k+ +         g   +  d++  G +Gli a + fd+++G++++tya+  ++  +  ++++
  MMETSP1174-20130828|35827_1 181 MDNLEAG-RQAKSQLVSDNFGLVQSVVRKYVKgarsqmqtHGSrvESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKS 270
                  4555555.78********************8755555555444124569****************************98887766666655 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 2.6e-09
    TIGR02846 162 klevkklkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkllk 224
                  ++ + +++  l ++l+++e +v++lr+Gl  + +++ rei+ +lgi r    ri +k+++kl +
  MMETSP1174-20130828|35827_1 356 QVTAGDIEAVLrNILSSQEISVLRLRFGLDGEASRSYREISTTLGIGREMSRRICQKSFEKLRN 419
                  56667788888889**********************************************9965 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.4   1.6e-17   4.9e-15      35     266 ..     189     419 ..     176     423 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.6e-17
    TIGR02392  35 eaakkLvlshLrlvvkiargY........rgYG..LpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqrkLFFnlrkakkklk..galseeeveavaeeLgvseeevlemesRlsgkDlsleaeseededeseelieyLadkeseaeeeleeeeeeekqkeklkealek.ldersrriieaRw.le.dekltLeelaaeygvsaeRvRqiekkalkklka 266
                  +a ++Lv  +  lv ++ r+Y        +++G  ++ +d++qeg +GL++a  +fd +rg+R++++a  W+ + +  + +++ rlv+v  +   + L  ++++++k++   g++++ e++++ae  +v+ ++ ++  +  + + +s +a+++e +    + ie  + +         e+e ++ ++  +++ l++ l +++ ++++ R  l+ + +   +e+++++g+ +e  R i +k+++kl++
  MMETSP1174-20130828|35827_1 189 QAKSQLVSDNFGLVQSVVRKYvkgarsqmQTHGsrVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRF-MKSSRLVHVPFA--VQDLGKKIQSVEKEVLpdGKVESFELNELAEAFNVTITKARSARRSYQQSVVSYDAPIDETH----NFIEEYSAS---------ESEGAQVTAGDIEAVLRNiLSSQEISVLRLRFgLDgEASRSYREISTTLGIGREMSRRICQKSFEKLRN 419
                  555566666666666666655333333234455337889**************************************99.6999****9764..45678888888886644699*******************99999888888889999888832....333333333.........23333444444555554326789999999997355567999**************************97 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   1.1e-16   3.6e-14      26     252 ..     186     420 ..     165     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.1e-16
    TIGR02941  26 kneeaqeklvkkykdlvesiaykyskgs....aih......edlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavde.ltaelqrspkiaeiadrlgvseeevleimemgqsykalsvddkieadsdGstvalldlvGesedgydqtekrlvlekilpilserekeiiecif....ienlsqketGerlGisqmhvsrlkrraikklkea 252
                     +a+ +lv+    lv+s+ +ky kg+     +h       d+vq G++Gl+ a +++d   g +f ++a   +   + r+++     vhvp  +++lG ki+ + +e l + +  s ++ e+a+ ++v+   + ++  +++sy+ + v     a  d  t   ++    se +  q+    +   + +ils +e ++++  f    + + s +e    lGi +    r+ +++ +kl+++
  MMETSP1174-20130828|35827_1 186 AGRQAKSQLVSDNFGLVQSVVRKYVKGArsqmQTHgsrvesTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKSS-RLVHVPFAVQDLGKKIQSVEKEvLPDGKVESFELNELAEAFNVT---ITKARSARRSYQQSVVSYD--APID-ETHNFIEEYSASESEGAQVTAGDIEAVLRNILSSQEISVLRLRFgldgEASRSYREISTTLGIGREMSRRICQKSFEKLRNT 420
                  44678899*****************98522222233333336*****************************************975.57****************99883456677999*******99997...6778889999987665433..2333.356788888899988888888888888889************995443456788999********9999**********975 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.27        84      82     112 ..     145     175 ..     114     199 .. 0.80
   2 !   49.8   0.2   2.3e-16   7.4e-14      17     215 ..     217     413 ..     201     420 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.27
    TIGR02479  82 akkleeaieelearlgrepteeeiaeelgld 112
                   ++l+e ++ le+rl+r p+ ee  +  g +
  MMETSP1174-20130828|35827_1 145 ENTLQECYKLLERRLERPPSPEEWCAVAGFK 175
                  56788899999*********99987777665 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 2.3e-16
    TIGR02479  17 kvklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGailDeLRk..ldwvprslrkkakkleeaieele.arlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedeelsladliedkksedpeeelereelkeklaeaiekLsereklvlsLyY....eeeLnlkEigevLelse...sRvsQlhska 215
                  +++  s ve  D++q G+lgL+ a+e++d ++g++F+tya++++   +   +++  l  vp  +++  kk++++ +e+      ++ + +e+ae+ ++++ + r+a++   ++s+vs+d+ +++ ++   +++ +++++s     ++   +++  l+++   Ls +e  vl L +    e   +++Ei+  L+++     R++Q   k+
  MMETSP1174-20130828|35827_1 217 MQTHGSRVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKSsrLVHVPFAVQDLGKKIQSVEKEVLpDGKVESFELNELAEAFNVTITKARSARR-SYQQSVVSYDAPIDETHN---FIEEYSASES--EGAQVTAGDIEAVLRNI---LSSQEISVLRLRFgldgEASRSYREISTTLGIGRemsRRICQ---KS 413
                  34556789************************************9777776765114568999999999999998886515566777899***************995.556899*****9996544...3333333333..33455556666666544...899*********95554566789*********9623247777...44 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.1   6.3e-14     2e-11      21     170 ..     177     337 ..     170     420 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 6.3e-14
    TIGR02850  21 mrellvrlkegdkeareklingnlrlvlsviqrf........nnrgeyvd..dlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdnnpirvsrslrdiaykalqvrdklvskkskep.tvseiakelevpkeevvfaldaiqdpvslfe.pi 170
                   +el+ +l+ g  +a+ +l++ n+ lv sv++++        +  g  v+  d+ q g++gl+++ ++fd ++ ++fstya   +   + r+++    + v  +++d+  k   v ++++ + + e    +e+a+ ++v+ ++   a  + q+ v  ++ pi
  MMETSP1174-20130828|35827_1 177 TQELMDNLEAG-RQAKSQLVSDNFGLVQSVVRKYvkgarsqmQTHGSRVEstDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMKSSRLVHVPFAVQDLGKKIQSVEKEVLPDGKVESfELNELAEAFNVTITKARSARRSYQQSVVSYDaPI 337
                  56777777776.5799***************9873322222234566664449**********************************************************999999998887766526899********9999999999988765554155 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.2e-07   7.1e-05      40     115 ..     178     262 ..     170     278 .. 0.79
   2 !   16.0   0.0   4.3e-06    0.0014     179     228 ..     370     419 ..     349     424 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.2e-07
    TIGR02835  40 ealleklekgdeavksiliernlrlvvyiarkf........entginie..dlvsigtiglikavntfdpekkiklatyasrcien 115
                  + l+++le g  ++ks l+  n+ lv  + rk+        +  g  +e  d+v  g +gli+a + fd ++ i+++tya+  ++ 
  MMETSP1174-20130828|35827_1 178 QELMDNLEAGR-QAKSQLVSDNFGLVQSVVRKYvkgarsqmQTHGSRVEstDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNS 262
                  57889999886.5799*********999999874333332234565665559****************************877665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 4.3e-06
    TIGR02835 179 lndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkk 228
                  l+++e  +l+lrfgl ++  ++ +e++  lgi +    r+ ++ + +l+ 
  MMETSP1174-20130828|35827_1 370 LSSQEISVLRLRFGLDGEASRSYREISTTLGIGREMSRRICQKSFEKLRN 419
                  7889999*****************************99999999999985 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.81   2.6e+02     162     198 .]     124     160 ..     103     160 .. 0.69
   2 !   17.5   0.0   1.5e-06   0.00047      24      99 ..     205     278 ..     183     294 .. 0.80
   3 !    6.7   0.0    0.0031      0.97     139     175 ..     358     399 ..     314     418 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.81
    TIGR02859 162 yldgk.syqeiaedlnrhvksidnalqrvkrkleklle 198
                   ld k + q+    l r++k i+n+lq   + le+ le
  MMETSP1174-20130828|35827_1 124 VLDSKrAAQKNEIILCRRIK-IENTLQECYKLLERRLE 160
                  45544144555556677776.89999999988888775 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.5e-06
    TIGR02859  24 liekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhipl 99 
                  +++ky +  +++ +++     +  di+qeg++gl +a   +++d+   f ++a + v   +   +k ++r  h+p+
  MMETSP1174-20130828|35827_1 205 VVRKYVKGARSQMQTHG-SRVESTDIVQEGVLGLIHAAEKFDADRGIRFSTYATIWVNSYVGRFMK-SSRLVHVPF 278
                  56666666666666653.345778*******************************99887766666.468888886 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0031
    TIGR02859 139 elakieskleellselelkvlvly..ldg...ksyqeiaedl 175
                    ++ie  l ++ls+ e+ vl l   ldg   +sy+ei++ l
  MMETSP1174-20130828|35827_1 358 TAGDIEAVLRNILSSQEISVLRLRfgLDGeasRSYREISTTL 399
                  46789***************97642389866679****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.48
# Mc/sec: 1204.40
//
Query:       MMETSP1174-20130828|35831_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1174-20130828|35829_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   16.2   0.1      0.039   12.0   0.0    2.3  2  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
  ------ inclusion threshold ------
      0.011   13.6   0.1      0.037   11.8   0.0    1.9  2  TIGR01990 bPGM: beta-phosphoglucomutase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.028        58       3      18 ..     612     627 ..     610     636 .. 0.86
   2 !   12.0   0.0   1.9e-05     0.039      62     182 ..     720     841 ..     671     844 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.028
    TIGR02009   3 aviFDlDGvlvdtasl 18 
                  av+F +DG+l dt  +
  MMETSP1174-20130828|35829_1 612 AVLFNFDGTLGDTELV 627
                  9***********9865 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.9e-05
    TIGR02009  62 elseekieqlaerknelyrellr.ltgaevlpgienlleelkkkkiavalgsss..knakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvkpeecvvfEDaeaGveaaraagmf 182
                  e+++++ + l + ++   + +++  + a   ++++ +le lk  ++  a++++   +  +  ++++gl+++f  +   s   +g  +   +++a++  +++p  c+++E +  Gv +a  +g+ 
  MMETSP1174-20130828|35829_1 720 EVANQRYNSLEQMQR--SETMIAvIAKAVPTCHCNDMLESLKTMDVTCAIATATnyRDRHVSIDAAGLRRYFSYRSVHSPPTDGASKDSAYMQAVQWSEAQPLDCIALESSVEGVISALGSGVA 841
                  444444444444332..233333222246677889999****999987777766336667789************999999999999****************************999877765 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.41   8.5e+02       3      16 ..     612     625 ..     611     630 .. 0.89
   2 ?   11.8   0.0   1.8e-05     0.037      88     182 ..     745     841 ..     717     845 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.41
    TIGR01990   3 aviFDlDGvitdta 16 
                  av+F++DG + dt 
  MMETSP1174-20130828|35829_1 612 AVLFNFDGTLGDTE 625
                  89**********96 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.8e-05
    TIGR01990  88 edvlpgikelleelkkkkikialasas..knaklvleklelkdkfdaivdaaevkkgkPdPeiFlaaaeklgvspeecigieDaeaGieaikaagil 182
                  +      +++le lk+ ++ +a+a a   ++ ++ +++ +l+++f +    +  + g  +   +++a++  + +p +ci++e +  G+ ++  +g+ 
  MMETSP1174-20130828|35829_1 745 AVPTCHCNDMLESLKTMDVTCAIATATnyRDRHVSIDAAGLRRYFSYRSVHSPPTDGASKDSAYMQAVQWSEAQPLDCIALESSVEGVISALGSGVA 841
                  4444456899*************99972246678899***********999999999999***************************9998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.17s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2866.93
//
Query:       MMETSP1174-20130828|35828_1  [L=987]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-286  950.9  17.3   3.2e-182  605.7   2.2    2.2  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   1.5e-139  464.1  17.4    4.9e-92  306.9   3.7    2.3  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   1.7e-111  371.5  17.7    1.8e-74  249.1   5.0    2.4  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.3e-89  297.8  14.4      8e-42  141.1   3.2    5.6  5  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    1.5e-86  288.7  17.2    1.5e-30  103.3   0.4    4.2  3  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    1.5e-85  285.7  13.2    3.7e-55  185.1   4.7    2.7  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    5.1e-80  267.4  11.0    1.8e-60  202.8   3.9    3.0  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    7.1e-68  227.1  11.5    3.8e-49  165.1   4.3    2.9  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    9.2e-63  210.8  17.6    8.6e-41  138.2   8.3    3.9  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    3.2e-56  188.3  10.5    1.5e-27   93.4   1.7    4.5  4  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      6e-42  142.0  19.7    2.7e-18   63.9   6.9    4.1  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    1.8e-40  136.9  21.3      5e-18   62.9   6.2    4.5  3  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    5.1e-30  101.8  14.7    1.3e-14   50.7   0.1    4.6  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    2.8e-26   89.6  16.4      1e-10   38.2   0.1    3.4  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
     0.0017   15.8   0.0      0.057   10.8   0.0    2.5  2  TIGR00099 Cof-subfamily: Cof-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  605.7   2.2  1.2e-184  3.2e-182       9     621 ..      12     655 ..       6     661 .. 0.89
   2 !  350.7   4.4  1.4e-107  3.8e-105     625     881 ..     700     968 ..     696     969 .. 0.96

  Alignments for each domain:
  == domain 1    score: 605.7 bits;  conditional E-value: 1.2e-184
    TIGR01517   9 svedavideadvsv.sielkledalkvleklgeaegiakklktdlneGvss..selerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGvailvsvllvvlvtavnDykkelqfreLnekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkek..LlsGtkvlegsgrmlvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyige...............eavrnilveaivlnssaeeekdkgkeefiGsktetalLelvklllkdvkekrkeekvvk...iypfeserkkmsvvvkhseglRlfikGaseivlkkcekkldsngeakeise.kkdevedeienlasealRtislayk........delpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelalegkefrk......dkilpklrvlaRssPlDkqlLve 621
                  ++ d++   +d+s  ++ ++ ++ l  l+++g++e + kkl+t+   G+s+  + l  R++v+g+n +pe+++ksf+ql+ + ++D+t+i+L v+avvsl+ g   ++ ++gwieGvailv+vl+v +vtavnDy+ke+qfr+Ln+  e+  ikv R+g+ +qis +++vvGDiv l+ Gd +p Dgv+++ + l  Des ltGe  +i+k +e+  LlsG +v+ gs++ +v avG +s++G++   l+++  ++plq kL++la++ig +G+g+a l++   +  ++ +    + ++   t+l+ fii+vtivvvavPegLPLavt++Lay++++++ dnnl+R+LaaCetmG+at iCsDktGtLt+n m+ v g+ +                +  +++l+e+i++n++a+  k++g    iG+kte alL+l+ +++ + +e+r+e+  v+   ++pf+s+rk+msvv++++  + l++kGase vl +c++kl+++   + +++ +++e+ + +++ a ++ R ++la++        d++p+++  +++l+l+a+v i dP+r++v++av++cqraGi vRmvtGDn+ ta aiarecgi t+++lal g++fr+      d+ lp+l+vlaRssP+Dk++Lv+
  MMETSP1174-20130828|35828_1  12 KMGDFALSRDDLSGiNKPQQDHENLGALKEMGGVEVLLKKLSTSA-GGLSEtpEALALRKEVFGSNDMPEPESKSFIQLFIDTFEDTTVIILCVSAVVSLGAGMY-DDPDKGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEPVEIRKDHEHpfLLSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQEASNTPLQDKLDTLANQIGWVGIGFACLTFAAQISVFLTTAEEITASKLFDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGdeatsepekvfaaldSMTKDVLMEGIAVNTTATLSKTQG---VIGNKTEGALLKLLANVGINATEVRQERLDVErdwVFPFSSSRKRMSVVLRNK--YLLYTKGASETVLAQCKFKLGKDARKEFLTQsDREELFKLMDQWANKSYRVLALAHTevasgaagDDTPDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTEDGLALTGPDFRQltpaqlDEQLPRLQVLARSSPEDKHTLVT 655
                  566666666776541344556777788899***********9985.688752267889********************************************986.6799*************************************************************************************************9999876555***********************************************************************999999999999******************************************************************************9864111111211111111346889999999999998877665...79****************999999988766654559**************876..899******************99988876551556788899*************998444444446788899999*******************************************************************8444444568******************96 PP

  == domain 2    score: 350.7 bits;  conditional E-value: 1.4e-107
    TIGR01517 625 lgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwknilgqaayqlvvlfilefaGeelf...........tivfntfvllqlfnelnaRkle.elnvfeglfknaifvaivlitlavqviivefgGaalsvvslsieqWllcvllgalslilgvllrliPv 881
                   ge+v vtGDGtnD+PaL+ advG++mg +Gt+vakeasDi+++dD f siv+av+WGR+v d+i+kflqfqLtvn va+il+f++al+  + pL+av +LWvnlimDt++aLaL te Pt++lldR+P  r+apl+ r+m++ni  q++yqlv l+ ++  G+++f           t++fn+fv++q+fnelnaR ++ ++n+ +++++n +f  i+++t+ +q  iv++gG ++++++l ++qW+ +v+lgal++++g l+rliPv
  MMETSP1174-20130828|35828_1 700 DGEIVGVTGDGTNDGPALRAADVGLSMGLSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALAGYEPPLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLKRTAPLVNRTMIRNIAVQSIYQLVLLVSMLKLGDKMFpgielnstvhyTLLFNVFVFCQVFNELNARSITnDMNILKDMHRNPMFQIILVFTVIMQYGIVQYGGDFTKTAPLDQTQWIHSVALGALTIPIGFLMRLIPV 968
                  69*************************************************************************************************************************************************************99999987666666666669*******************9637******************************************************************8 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.9   3.7   1.8e-94   4.9e-92       9     583 ..      45     657 ..      39     661 .. 0.84
   2 !  162.5   2.9   8.3e-51   2.3e-48     585     810 ..     699     929 ..     695     942 .. 0.89

  Alignments for each domain:
  == domain 1    score: 306.9 bits;  conditional E-value: 1.8e-94
    TIGR01522   9 veetlskletdlenGlsssqev.srrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgnidd.......avsitlailivvtvgfvqeyrsekslealnklvpae.chliraGkeehvlasklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkksseaiealaersniaymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfi..vigvivlvGllqGk...........dwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiy.tvdklaa.....lslktvavekilkvgalcnnakvkneaasllgkptdvaliellekfgledl..re...tvkrvaevpfsserkymavkvltdskkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskt................ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavkss..keGekldelddqqlsevvdkvavfaraspehklkivkal 583
                  ve  l+kl t   +Gls + e+ + r++++Gsn++   e +s+++ f++ f +d  +++l  savvs+  g +dd        v+i +a+l+v  v+ v++y  ek +++lnk+      ++ r+G+  ++ ++++v Gd+v l+ Gd++p d  ++e+  ls des+ltGe   ++k+ e    l+        G  v  G ++ +v++ G ++++G++  m+++ e+  tplq  +d+l  ++  v ++   ++    + +++              +le f i v++ v a+peGlp+ vt++la    +m   + ++r l + et+G    icsdktGtltkn+mt+   + + d++++     ++      +++l  g   n +    +++ ++g+ t+ al++ll+++g++ +  r+   +v+r   +pfss+rk m+v +   +k + + kGa e vl  c+  l kd ++e lt++ +e++ +   + a++  rvlala+++                e++l++  l+ ++dp rpdvk av +   +G+ v m+tGd  +ta +iar+ G+   ++   +G ++ +l   ql+e +++ +v+ar+spe+k  +v  l
  MMETSP1174-20130828|35828_1  45 VEVLLKKLSTS-AGGLSETPEAlALRKEVFGSNDMPEPESKSFIQLFIDTF-EDTTVIILCVSAVVSLGAGMYDDpdkgwieGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDIlIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEPVEIRKDHEHPFLLS--------GCNVTGGSATFVVIAVGPESQWGRIRAMLSQ-EASNTPLQDKLDTLANQIGWVGIGfaCLTFAAQISVFLTTaeeitasklfdTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWfAGDEATSepekvFAALDSMTKDVLMEGIAVNTTATLSKTQGVIGNKTEGALLKLLANVGINATevRQerlDVERDWVFPFSSSRKRMSVVL--RNKYLLYTKGASETVLAQCKFKLGKDARKEFLTQSDREELFKLMDQWANKSYRVLALAHTEvasgaagddtpdasalETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTEDGlaLTGPDFRQLTPAQLDEQLPRLQVLARSSPEDKHTLVTRL 657
                  55556677665.689998888725799************************.999999999*************9555555569*****************************9876427899*************************************************999999988765554........777899*******************999886.7889**************998655114444445555543211111111232579*********************************************************************98876244555432222144444555677888888888888888899*****************99754224411145666679*********9755..57899***************************************************985422222222222222222789*****************************************************9972257******************************9999876 PP

  == domain 2    score: 162.5 bits;  conditional E-value: 8.3e-51
    TIGR01522 585 krGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsavi..ivvgtllvfvkelqdgv.v.tardttmtftcfvffdmfnalacrsetksvfei.GlfsnkmflyavgasllGqllvv 810
                  + G++v +tGdG nd pal++ad+G++mG +Gtdvakea+d+++tdd f +i+ a+  G+ +f+ni+ f++fql+    al l  l+++ ++e plna+ +lw+n++md   a +lG e+  + +l + p kr+++++ + +++++ v ++   ++ +++l    ++  g  + ++   t+ f  fvf ++fn l +rs t  +  +  +  n mf++ +  +++ q  +v
  MMETSP1174-20130828|35828_1 699 QDGEIVGVTGDGTNDGPALRAADVGLSMGLSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALAGYEPPLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLKRTAPLVNRTMIRNIAVQSIYqlVLLVSMLKLGDKMFPGIeLnSTVHYTLLFNVFVFCQVFNELNARSITNDMNILkDMHRNPMFQIILVFTVIMQYGIV 929
                  579***********************************************************************************************************************************************999986114455666666677654312134466999*******************99876636999*****99998888887655 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.1   5.0   6.5e-77   1.8e-74       2     538 ..      91     655 ..      90     662 .. 0.81
   2 !  127.6   1.9   3.6e-40   9.9e-38     541     788 ..     699     957 ..     694     967 .. 0.78

  Alignments for each domain:
  == domain 1    score: 249.1 bits;  conditional E-value: 6.5e-77
    TIGR01116   2 leqfedllvrilllaavvsfvlva......alvePlvillilvlnaivGvwqernaekaiealkeleseea.lvlrdar....kakdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklskv.ialic......ilvwvinikk......fla.iyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkm.svaklvalekefkvegttyepveakikdleelakiaalcndsklavdkkkvekvGeateaalkvlveklglsaaknkkslksrealacnslikkkatlefsrdrksmsvlvksnk.lfvkGapeellersth.illkgsavPltekakqkilaslkelssealrclalavke................esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGils....sftGkefeeleekk.......alvfsrvePshklklve 538
                  ++ fed+ v il ++avvs+   +      +++e + il+ +++ aiv  +++ + ek+  +l ++  + + +v r+++     +k++v+Gdiv l+ Gdk+p d  +le++ l  d+s ltGe v++ k  e            + +l sG +v+ G a  vv++ G +++ G+ir+   ++e  +tPl+ kld + +++  v i++ c      i v++   ++      f + + +f i v++ v a+PeGlP  +t  la  t +m + n l+r l   et+G +t icsdktGtlt n+m +va  +a ++  +  +  +++ ++ +kd+  l + +a+   ++l    k+   +G+ te al  l   +g++a++     ++++       +++  ++ fs +rk msv+ +++  l+ kGa+e++l ++   +  + ++  lt+ +++++   ++++++++ r+lala  e                e++l++  +v++ dP r++v+da+++c++aGi v ++tGdn  ta aiar+ Gi++    ++tG +f +l++++         v++r  P++k+ lv 
  MMETSP1174-20130828|35828_1  91 IDTFEDTTVIILCVSAVVSLGAGMyddpdkGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILiKVKRNGEvvqiSTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEPVEIRKDHE------------HPFLLSGCNVTGGSATFVVIAVGPESQWGRIRAM-LSQEASNTPLQDKLDTLANQIGWVgIGFACltfaaqISVFLTTAEEitasklFDTvLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMtCVAGWFAGDEATSEPEKVFAALDSMTKDV--LMEGIAVNTTATLS---KTQGVIGNKTEGALLKLLANVGINATEV----RQER-----LDVERDWVFPFSSSRKRMSVVLRNKYlLYTKGASETVLAQCKFkLGKDARKEFLTQSDREELFKLMDQWANKSYRVLALAHTEvasgaagddtpdasalETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTedglALTGPDFRQLTPAQldeqlprLQVLARSSPEDKHTLVT 655
                  689****************975432223337********************************99988865267777662222579****************************************9988654............479****************************975.5677889**************9886888883322223466654443111111444246899***************************************************************9445566666665555666666666655554..34555555555554...444579********99999898554433....2222.....335678899***********9987652789***********861555667889**************************97644444444444555555899****************************************************7555589********9986222222247999****99999986 PP

  == domain 2    score: 127.6 bits;  conditional E-value: 3.6e-40
    TIGR01116 541 eldqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgiea.lipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyvGlatvaal.........iw.ykqkastlslsvlvviemlnalnals..edssllkippwenkwlvaaiasslalhllilyvpllsalfgvvplslteWllvlkvslPvi 788
                  + ++iv +tGdG nd Pal+ ad+G++mG sGt+vakeasd+v++dd f +ivkav  Gr++++n+++f+++ ++ n   ++  flta+ g e  l++v +lWvnl+ d + a alg + p + +l ++p k+  pl++  ++    v  +y  +  v +l         i    +   tl + v+v  +++n lna s  +d  +lk   + n+ + + ++ ++ + + i+  +      +++pl+ t+W+  + + +  i
  MMETSP1174-20130828|35828_1 699 QDGEIVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALAGYEPpLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLKRTAPLVNRTMIRNIAVQSIYQLVLLVSMLklgdkmfpgIElNSTVHYTLLFNVFVFCQVFNELNARSitNDMNILK-DMHRNPMFQIILVFTVIMQYGIVQYG--GDFTKTAPLDQTQWIHSVALGALTI 957
                  5579*************************99*************************************************************9549*******************************************988766666677744444333311221111122022334589999************988323444444.45566665555555555566554333..677899********98777655444 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   3.2   2.9e-44     8e-42       2     246 ..     128     401 ..     127     442 .. 0.80
   2 !   18.1   0.0   5.7e-07   0.00016     258     292 ..     466     500 ..     461     512 .. 0.93
   3 !   56.4   0.1   1.4e-18   3.8e-16     309     367 ..     555     613 ..     523     614 .. 0.93
   4 ?    2.7   0.0     0.026       7.1     363     382 ..     639     658 ..     637     661 .. 0.88
   5 !   81.1   0.1   4.4e-26   1.2e-23     384     474 ..     700     796 ..     695     800 .. 0.91

  Alignments for each domain:
  == domain 1    score: 141.1 bits;  conditional E-value: 2.9e-44
    TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvllsgsa.evdessLtGEsnpvekkeav...fagtinfegtlklkv.........skiavvvktgsektplqrkldklalifllalllla.......llvfllvlie......lktflkiilralillviaiPiaLpvavtialavgdkrlai...lvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqsgspdek 246
                  il++vl++a++ a++++++e+++r+l++ + +    + +++++++is+k++vvGDivl+++g+k+p Dgv+l++++  +des LtGE + + k +++    +g+++++g+++++v          +i +++++  + tplq kld la  + ++ + +a       ++vfl+++ e      + t+l++++++++++v+a+P++Lp+avti la++++++++   l+r l a+e++g+ + i+sDKTGTLT+n+m++++ + +g++ +++p ++
  MMETSP1174-20130828|35828_1 128 ILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVlSCDESDLTGEPVEIRKDHEHpflLSGCNVTGGSATFVViavgpesqwGRIRAMLSQEASNTPLQDKLDTLANQIGWVGIGFAcltfaaqISVFLTTAEEitasklFDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMAdnnLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGDEATSEPEKV 401
                  899************************944444444445556789***************************998538**************9988633358999999999887622333322257889****************9997654433333300000113444444433222222568899********************************866669**************************************9999999765 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.7e-07
    TIGR01494 258 vlefeserkrmsvivkkpkgkyvkGapevilervk 292
                  v++f+s+rkrmsv++++++  y+kGa e++l+ +k
  MMETSP1174-20130828|35828_1 466 VFPFSSSRKRMSVVLRNKYLLYTKGASETVLAQCK 500
                  79*****************************9997 PP

  == domain 3    score: 56.4 bits;  conditional E-value: 1.4e-18
    TIGR01494 309 lavaskeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfa 367
                   a+ ++ +l +l+a+ dplr+dvk++++++++agi v m+TGDn  tA aia+e+g+f+
  MMETSP1174-20130828|35828_1 555 SALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFT 613
                  5677788999***********************************************97 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.026
    TIGR01494 363 lglfarvsPeqKaeivellk 382
                  l+++ar+sPe+K+++v+ l 
  MMETSP1174-20130828|35828_1 639 LQVLARSSPEDKHTLVTRLN 658
                  7899************9875 PP

  == domain 5    score: 81.1 bits;  conditional E-value: 4.4e-26
    TIGR01494 384 kgevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvlnllltslp 474
                   ge+v ++GDG+ND pAL+aAdVG++++      Ak+a+div++dd + ++v+++++Gr+++++i k+++++l++n+++ il++++++  + ++  +
  MMETSP1174-20130828|35828_1 700 DGEIVGVTGDGTNDGPALRAADVGLSMGlsgtdvAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALAGYEPPLNA 796
                  599************************8778888**************************************************9988766555555 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   5.7   9.1e-28   2.5e-25      30     375 ..      64     388 ..      50     392 .. 0.83
   2 !   95.1   0.0   1.7e-30   4.6e-28     456     685 ..     431     655 ..     403     660 .. 0.80
   3 !  103.3   0.4   5.6e-33   1.5e-30     693     845 ..     703     850 ..     696     873 .. 0.86

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 9.1e-28
    TIGR01523  30 eeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfa..ttd.....wieggvisavivlnvlvglvqeykaektmdslktlasp.nahvirsskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkiakslrqdsklisrepskrrklnkyiltkkvvqavlglnvgtplqrklsklavllfciavllaiivmaaqkfdvdkevaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarrvw 375
                  e +  r + +g n + +    ++ ++ +    ++ +++l ++a++s++  + d     wieg  i + + +  +v  v++y  ek +  l+++a     +v r++    i +k++v gd+vll  gd +p d  ++e+  +  de+ ltge + + kd +  f                s   v+ g a  +vi+ + +s+ g+i + l q++       s++ +++k  +  + ++    + +g      l+  a +  ++    a  + a++ fd   e  i  +++ +  +pe l   ++i++a  +++m   + ++r l a e++g  t+icsdktgtlt+  m +   w
  MMETSP1174-20130828|35828_1  64 EALALRKEVFGSNDMPEPESKSFIQLFIDTFEDTTVIILCVSAVVSLGagMYDdpdkgWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDiLIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEPVEIRKDHEHPFL--------------LSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQEA-------SNTPLQDKLDTLANQIG---WVGIGFA---CLTFAAQISVFL--TTAEEITASKLFDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGW 388
                  455567777899999988888999999999999*************973344445566****988877777778999***************99872579*********************************************************9887774..............68899**********************99887765.......44455555443333333...2233432...466666665444..3567789********99999999999999*****************************************************99876655 PP

  == domain 2    score: 95.1 bits;  conditional E-value: 1.7e-30
    TIGR01523 456 vkgepteialqvfakkldlgkkdllksnefvae...ypfdsevkrmavvyedqqnetytvyakgaverilercsssygst.....leepdveliikqveslaaeglrvlalaskvi.dkddvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdalseeevddlkvlplviarcapqtkvkmie 685
                  v g+ te al  +  ++ +   ++ +    v     +pf s  krm+vv  +   + y +y+kga e++l +c    g       l+++d+e + k ++  a++  rvlala   + + +    t + ++ e++l + +lv i dp r + k av ++ ragi v m+tgd + ta aiare gi+            d + +tg +f  l+  ++d+      v+ar +p+ k  ++ 
  MMETSP1174-20130828|35828_1 431 VIGNKTEGALLKLLANVGINATEVRQERLDVERdwvFPFSSSRKRMSVVLRN---K-YLLYTKGASETVLAQCKFKLGKDarkefLTQSDREELFKLMDQWANKSYRVLALAHTEVaSGAAGDDTPDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTE----------DGLALTGPDFRQLTPAQLDEQLPRLQVLARSSPEDKHTLVT 655
                  4556666665555555555555555544444322339************976...4.999*************99988643334499*************************7655056667777778888******************************************************988..........78999********999999865566799*****99987765 PP

  == domain 3    score: 103.3 bits;  conditional E-value: 5.6e-33
    TIGR01523 693 fvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfv.lqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygii 845
                  +v +tgdg nd p+l+ a+vg++mg  g+dvakeasdiv++dd f si+ av  gr ++dni+kf+ +ql v+ va +l ++  l+  +       pl  v +lw++++  ++ a+ lg e  +  l++r p      + ++ +i ++ v  i+
  MMETSP1174-20130828|35828_1 703 IVGVTGDGTNDGPALRAADVGLSMGLSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLqFQLTVNAVALILTFLTALAGYE------PPLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLKRTAPLVNRTMIRNIAVQSIY 850
                  6889*************************************************************846788888887777777776544......59*************************************99999999999887664443 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.1   4.7   1.3e-57   3.7e-55      35     611 ..      57     615 ..      39     621 .. 0.76
   2 ?   -1.5   0.0      0.32        88     639     676 ..     619     654 ..     615     658 .. 0.87
   3 !  103.3   0.2   6.7e-33   1.8e-30     682     825 ..     700     842 ..     694     859 .. 0.90

  Alignments for each domain:
  == domain 1    score: 185.1 bits;  conditional E-value: 1.3e-57
    TIGR01106  35 kglsearaaellard..gpnaltppkttpeyvk.farqlfgglslllwigailcflaygiqaaeeeepsednlylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstgdrtvlgriaslasglesgktpiaieiehfidii.............tgvavflgvsffilslileytfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwfdnqiheadttedqsgvsfdkssetwkalsriatlcnravfkagqenvpvlkravagdasesallkfielalgsvkelrerykkv...veipfnstnkyqlsihekedasepryllvmkgaperilercssilik.gkeqpldeelkeafqnaylelgglgervlgfchlylpeeqypegfkfdvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiiseg 611
                   glse+  a  l ++  g n +  p++   +++ f+  +     ++l ++a++ + a g+     ++   + + + v++ +v ivt v  y +e +  k+ +  ++++     v r+ge ++i+++++vvgd+v ++ gd+ip d  +++++ l  d+s ltge  p        he p+      +   n+  g a+ +v+++g ++  gri ++ s  e+ +tp+  +++ + + i             + ++vfl  +  i +  l  t+le+ i+ ++i+v  vpegl  +vt++l+ ++ ++   n l++ l a et+g ++ icsdktgtlt+n mt    wf     ea +  ++  +     s t   l + +++   a++  +q         v+g+ +e allk++  +  +++e+r+    v      pf s+ k ++s+        ++yll  kga e +l +c   l k  +++ l ++ +e + +   +      rvl ++h  +++         d+ d      nl++  l++++dp r  v dav++c+ agi v mvtgd   ta aia+  gi +e+
  MMETSP1174-20130828|35828_1  57 GGLSETPEALALRKEvfGSNDMPEPESK-SFIQlFIDTFEDTTVIILCVSAVVSLGA-GMY-DDPDKGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDIL---IKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGE--PVEIRK--DHEHPF-----LLSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQ-EASNTPLQDKLDTLANQIgwvgigfacltfaAQISVFLTTAEEITASKLFDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGD--EATSEPEKVFA--ALDSMTKDVLMEGIAVNTTATLSKTQ--------GVIGNKTEGALLKLLANVGINATEVRQERLDVerdWVFPFSSSRK-RMSVV-----LRNKYLLYTKGASETVLAQCKFKLGKdARKEFLTQSDREELFKLMDQWANKSYRVLALAHTEVASGAAG----DDTPDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTED 615
                  5677766666666653356655444444.4444144444455555666666665443.333.3334455566777777788999999999999999888877777776...4589************************************************8..444444..477775.....344567778999****************999886.6777998888877766551111111111111344555666666677778889*****************************************************************************764..33222233333..34577777888878777777776655........699**********98877777777777665551114589988877.45554.....4568*****************9997624667788888888889999999*******9999888876544....477788888899***************************************************9886 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.32
    TIGR01106 639 vhgsdlkdltseqldeilkehteivfartspqqkliiv 676
                  ++g d+++lt+ qlde l   +  v+ar+sp++k  +v
  MMETSP1174-20130828|35828_1 619 LTGPDFRQLTPAQLDEQLPRLQ--VLARSSPEDKHTLV 654
                  68999************99876..99******998776 PP

  == domain 3    score: 103.3 bits;  conditional E-value: 6.7e-33
    TIGR01106 682 qgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlis 825
                   g iv vtgdg nd pal+ ad+g++mg++g+dv+k+a+d+++ dd f siv  v  gr +fdn++k + + lt n   +   ++  +++   pl +v +l ++l  d + a++l  e+    +++r+p + ++  lvn  +i 
  MMETSP1174-20130828|35828_1 700 DGEIVGVTGDGTNDGPALRAADVGLSMGLSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALAGYEPPLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLK-RTAPLVNRTMIR 842
                  689************************************************************************988777666677889999************************************86.567899998875 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   3.9   6.4e-63   1.8e-60       8     531 ..      67     658 ..      58     662 .. 0.79
   2 !   64.1   0.2     6e-21   1.6e-18     533     639 ..     700     808 ..     695     829 .. 0.91

  Alignments for each domain:
  == domain 1    score: 202.8 bits;  conditional E-value: 6.4e-63
    TIGR01647   8 kkrlkkyGpneleekkeskllk.FlsflwnPlswvleiAaiiaialen.......weDfviilallllnatigfieeskAgnaveaLkksla.pkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekklgd.iaysgsvvkkGEveavvvatGvntffGkaakLveeaekes...ghlqkilskigavlivlilvlvliellvellkrkeslres.........lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldkedvlllaalasreedk..daidtavlkkladlk..........................ealekykelefvpfdpvekrteatledeetgkkfkvtkGapqvildlvkek..keieee.........veekveelAerGlRaLgvava...............dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkk.kedklkseeleelvekadGFAevfPeHkyeivealq 531
                  + r + +G n+++e +++++++ F+  + +   ++l + a+++            w + v il+  l+ a ++ +++++ ++    L+k  +   +kv+R+g+ +++++k++v GD+v l++Gd +p+D  ++e + l++D++ ltGE + + k  ++    sg +v  G ++ vv+a G +  +G+  +++++ ++++    +l ++ ++ig v i +++++ + ++ v l++ + +++ s         +   + ++v+++P +lp  ++++lA  ++++  ++ +++ l+a E +   + +CsDktGtlt+n++++    +  +e+++e   ++aal s ++d   + i     ++l +++                          +++ +++     pf + +kr  + l+++     +  tkGa++ +l+++k k  k+ ++e         + + ++++A++ +R L++a++               + + + +l +l++++DP r+D k+++ ++++ g+ v+mvtGD++a a  +ar+ g+    +t + l  +  +  +l+  +l+e + + +  A   Pe k+++v +l+
  MMETSP1174-20130828|35828_1  67 ALRKEVFGSNDMPEPESKSFIQlFIDTFEDTTVIILCVSAVVSLGAGMyddpdkgWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEdILIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEPVEIRKDHEHpFLLSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQEASNTplqDKLDTLANQIGWVGIGFACLTFAAQISVFLTTAE-EITASklfdtvlesFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGDEATSEPEKVFAALDSMTKDVlmEGIAVNTTATLSKTQgvignktegallkllanvginatevrQERLDVERDWVFPFSSSRKRMSVVLRNK----YLLYTKGASETVLAQCKFKlgKDARKEfltqsdreeLFKLMDQWANKSYRVLALAHTevasgaagddtpdasALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGI----FTEDGLALTGpDFRQLTPAQLDEQLPRLQVLARSSPEDKHTLVTRLN 658
                  457788********887776543999****************98766566899999999999999999999******99999999997765415689***************************************************999999887725689************************9998888876652224666777888888888877777777766666433.33333355556544556678999***********************************************************999998888777777777777775555411223222222222222455555555666666665565543323333333344569999999998888766....5999************876334555558888999889999***************99***********9987778999**********************************************9986....55555544330223444457888888888888888888888888876 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 6e-21
    TIGR01647 533 rghlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrval.tlrivvflallililkfklpvllvvllallnDg 639
                   g +vg+tGDG nD PaL+ AdvG+ +    tD A+ a+Div+t+  +  iv+A++  R +F+ +++++ +++++ ++ +++++ ++ + ++  l++++++ + l+ D+
  MMETSP1174-20130828|35828_1 700 DGEIVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVnAVALILTFLTALAGYEPPLNAVMMLWVNLIMDT 808
                  6789*********************986378*****************************************99736899999999999************99999885 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   4.3   1.4e-51   3.8e-49      19     599 ..      44     658 ..      27     661 .. 0.76
   2 !   62.6   0.1   1.4e-20   3.8e-18     600     754 ..     699     856 ..     695     861 .. 0.84

  Alignments for each domain:
  == domain 1    score: 165.1 bits;  conditional E-value: 1.4e-51
    TIGR01524  19 eketllrkldsheeGlta..aevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt.......edleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGs....lakavsedreqtafdkGvksvskllirfmlvm..vpv.vllin..Glsk....GdwleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlek.hl..dvsGkkservlklayln...................ssfqtGlknvldravlekvdesiarstkarfkkvde.....ipfdferrrlsvvveeaaevrrlickGaveelltvathl.reggavvalsesekeelkavteelnrqGlrvvavatkklkasead....lskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidand..vllGadieelsdeelaaevekravfarltplqkerivtllk 599
                  + e ll+kl +   Gl+   +  + r++++G n+++e +  + + +++ +f++  +++l + a+vs  +       +     v i++ v++ ++++ v++   e+    l k+ +    +l +++ n+e +  ++  +++v Gd++ l +Gd ip d  v++++ l   +s ltGe   ve  + +++           +ll G nv+ G a  vv+a G ++ +G+    l++++s++  q  +d   +++ ++ i f  +   + + v+l     ++        le+++  +++ v   pe lp+ v+ +la  + ++     +++ l a + +G    +c+dktGtlt+++++ +  +   d +  + e+v  +a l+                   s+ q  + n  + a+l+ + +   + t+ r +++d       pf  +r+r+svv+ ++     l +kGa e +l+ +  +  ++ +   l++s +eel +  ++  ++  rv+a+a  ++ ++ a      +   e++l+++ ++a +dp +   k+a+a+ + +gi v+++tGdn   ++ i +e Gi ++d   l+G d  +l+ ++l +++ + +v+ar +p +k+ +vt l+
  MMETSP1174-20130828|35828_1  44 GVEVLLKKLSTSAGGLSEtpEALALRKEVFGSNDMPEPESKSFIQLFIDTFEDTTVIILCVSAVVSLGAgmyddpdKGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAE---DILIKVKRNGEVV--QISTKQIVVGDIVLLESGDKIPGDGVVLESNVLSCDESDLTGEP--VEIRKDHEH----------PFLLSGCNVTGGSATFVVIAVGPESQWGRiramLSQEASNTPLQDKLDTLANQIGWVGIGFACLTfaAQIsVFLTTaeEITAsklfDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAgWFagDEATSEPEKV--FAALDsmtkdvlmegiavnttatlSKTQGVIGNKTEGALLKLLANVGINATEVRQERLDVerdwvFPFSSSRKRMSVVLRNKYL---LYTKGASETVLAQCKFKlGKDARKEFLTQSDREELFKLMDQWANKSYRVLALAHTEVASGAAGddtpDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTEDglALTGPDFRQLTPAQLDEQLPRLQVLARSSPEDKHTLVTRLN 658
                  568999**********7621456789999*************************************9888887765333344455666777888888888888887777766655...4555555666655..6999***************************************5..553333333..........47899*******************999982222455555556667777888999***999975531133324443211233311224568999999************************************************************998765233124444444444..3334400000000000000122224445555666666777766666666666666655522334479************98766...9************9865155566788***************************98876554431344456679******************************************************99955579*******************************9999875 PP

  == domain 2    score: 62.6 bits;  conditional E-value: 1.4e-20
    TIGR01524 600 keGhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnv.fsvlvasafipfl.pmlalhlliqnllyd.vsqlalpfdkvdkefl.kkprkweakdlgrfllfiGpvssifdiatfl 754
                  ++G +vG  GdG nd palr+advG+s+  s +d+akeasdi++ +  ++ + ++v+ Gr +f ni k+l+   + n + + ++ l a a   +  p+ a+ +l  nl+ d +  lal  +   +  l ++p k  a  + r ++    v si++++ ++
  MMETSP1174-20130828|35828_1 699 QDGEIVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALiLTFLTALA--GYEpPLNAVMMLWVNLIMDtMGALALGTEAPTNALLdRRPLKRTAPLVNRTMIRNIAVQSIYQLVLLV 856
                  689************************975789****************************************99998875145555544..44416668889999999984578999998888777756799999999999999988999998877665 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.012       3.4     157     213 ..      82     140 ..      80     142 .. 0.79
   2 !  138.2   8.3   3.1e-43   8.6e-41      18     429 ..     122     614 ..      97     623 .. 0.80
   3 ?   -2.4   0.0       1.3   3.5e+02     419     447 ..     631     658 ..     619     661 .. 0.82
   4 !   71.3   0.2   5.9e-23   1.6e-20     449     537 ..     699     788 ..     690     813 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
    TIGR01525 157 eskakiqrladklasyfvplvlaialltflvwlalga.lk.a.ealeravavLvvacPca 213
                  esk+ iq ++d+++++ v++ ++ a++ + + + +   +k + e +   vavLvva  +a
  MMETSP1174-20130828|35828_1  82 ESKSFIQLFIDTFEDTTVIILCVSAVVSLGAGM-YDDpDKgWiEGVAILVAVLVVAIVTA 140
                  68999**********999998888888888886.33345554688888999999998877 PP

  == domain 2    score: 138.2 bits;  conditional E-value: 3.1e-43
    TIGR01525  18 vlegalllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGevieges.evDesllTGEslpvekkegdeVi.aGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltflvwlalga............lka..ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdseseeellalaaalessseHplakaivkyake.....................kslelkkve.................................................veeveevpgkgvsakvdge...eevrigneklleeleaeee......kvkeeleeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiide 429
                  ++eg+ +lv +l+  ++ ++   + +++ ++l ++a++   ++k ++++++++++++ vgDiv ++ G+kip DG+v+e +  + Des lTGE++ + k  ++  + +G     gs ++ v +vg +s+  +i  ++ + ++s +++q  +d+la+++  + + +a ltf++ + ++             + +  e++   v+++vva+P +L la++++++++++++     Li+  +a E++ +++ ++ DKTGTLTk ++t+++  +++d++ ++e  ++ aal+s ++ +l + i+ ++++                     +       +                                                 + +++   gk  + ++ ++   ee+    ++++++            + + +  +++++   ++++  + +l +l+a+ D+lrp++k+a+a+ +++gi v ++tGDn ++a a+A+e gi++e
  MMETSP1174-20130828|35828_1 122 WIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILIKVKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESNVlSCDESDLTGEPVEIRKDHEHPFLlSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQ-EASNTPLQDKLDTLANQIGWVGIGFACLTFAAQISVFLttaeeitasklfD-TvlESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGDEA-TSEPEKVFAALDSMTKDVLMEGIAVNTTAtlsktqgvignktegallkllA-------NvginatevrqerldverdwvfpfsssrkrmsvvlrnkyllytkgasetvLAQCKFKLGKDARKEFLTQsdrEELFKLMDQWANKS----YrvlalaHTEVASGAAGDDTPDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTE 614
                  56777999999999999*************************************************************9886379***************999865166666899*****************9777665.677899*************************99877768899999876642.2479***********************************************************************99998876.467788899999999999999999877775566666666655555555551.......05555555667778888888888888888888888778777755555444344444444444444444344444444444444432....133433333333444444455566666666999**********************************************9543 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.3
    TIGR01525 419 avAkelgiidevvaellPedKlakvkklq 447
                  ++ ++l    +v a  +PedK + v++l+
  MMETSP1174-20130828|35828_1 631 QLDEQLP-RLQVLARSSPEDKHTLVTRLN 658
                  5667788.689**************9986 PP

  == domain 4    score: 71.3 bits;  conditional E-value: 5.9e-23
    TIGR01525 449 eegkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllp 537
                  ++g+ v + GDG ND pAL aAdvG +mg sg+dva+ea+D+v+++d+  s+++a+   r ++ +i++ l + l++n+va++l ++  l 
  MMETSP1174-20130828|35828_1 699 QDGEIVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTALA 788
                  3566899*************************************************************************9998766553 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.3e-15   3.6e-13     137     290 ..      55     220 ..      27     224 .. 0.77
   2 !   93.4   1.7   5.4e-30   1.5e-27     393     699 ..     311     613 ..     284     616 .. 0.67
   3 !   13.9   0.0   5.5e-06    0.0015     751     799 ..     613     658 ..     611     662 .. 0.88
   4 !   37.6   0.3   3.8e-13     1e-10     802     966 ..     701     873 ..     696     937 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.3e-15
    TIGR01657 137 sn.GLtk..geiakrkelyGknei.eikvksfleLlveevlkPfyvfqvfsvilWll.......deyyyyallilvlsvlsivlsvkeirkqlkelrdmva..ksqsveViRekkeetiasdelvpgDivlisrleekllpcDavLlegsci.vnEsmltGEsvpvlK 290
                  s  GL++    +a rke++G+n + e + ksf++L+++ +     + + +s ++ l        d+ +   ++ilv ++++ +  + +  +++k++r++ +  +   ++V R+++ ++i+++++v gDivl++   +  +p D v+le++++  +Es ltGE v ++K
  MMETSP1174-20130828|35828_1  55 SAgGLSEtpEALALRKEVFGSNDMpEPESKSFIQLFIDTFEDTTVIILCVSAVVSLGagmyddpDKGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKvaEDILIKVKRNGEVVQISTKQIVVGDIVLLE--SGDKIPGDGVVLESNVLsCDESDLTGEPVEIRK 220
                  444665522467889*******9945679***********999999888887765531222333667899998888666555555555555566666665400457799************************..9999***********9858**********9998 PP

  == domain 2    score: 93.4 bits;  conditional E-value: 5.4e-30
    TIGR01657 393 rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee.......flkevtedssekksetlkalatchsltkledklvGDpldlkmleavgwtleeedesaleesilavvrtedktkelsiir..rfeFssalkrmsvivkteeerkkellafvKGaPEtiaells........ke.tvpsdyke...vlksytreGfRvlAlaskeLpkltlskaqdlsRdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgive 699
                   ++ + ++ ++ i+++ vP +LP++++++ +++  ++   + +       ++ G+   +c DKTGTLT++++   +v+g  +  e          + ++++ +    +  a+ t   l+k +++ +G   + ++l+    +  +  +++ +++            +l++ r   f+Fss+ krmsv+ +++      +l+++KGa Et+ + ++        ke   +sd +e    + +++++ +RvlAla+ e+ +      +  + +a+E nl++  l+ +  +l+pd k+ + + ++a i v m+tGDn+ Ta  +are+gi  
  MMETSP1174-20130828|35828_1 311 DTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMT--CVAGWFAGDEatsepekVFAALDSMT-KDVLMEGIAVNTTATLSKTQGV-IGNKTEGALLKLLANVGIN--ATEVRQE------------RLDVERdwVFPFSSSRKRMSVVLRNK------YLLYTKGASETVLAQCKfklgkdarKEfLTQSDREElfkLMDQWANKSYRVLALAHTEVAS-GAAGDDTPDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFT 613
                  334445677999************************9999999999999*********************986..44444433331122333222222222.1112222234444445554443.3555555555543322222..2223333............4444442279************9865......679************983332222111123444444111466899**************94.55666677889*******************************************************975 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 5.5e-06
    TIGR01657 751 sryslalsGkalavllekskellkklllkvkVfARvaPeqKeelvetlk 799
                  ++  lal+G+ ++ l   +   l++ l+ ++V+AR +Pe+K++lv+ l 
  MMETSP1174-20130828|35828_1 613 TEDGLALTGPDFRQLTPAQ---LDEQLPRLQVLARSSPEDKHTLVTRLN 658
                  56679********998665...9**********************9986 PP

  == domain 4    score: 37.6 bits;  conditional E-value: 3.8e-13
    TIGR01657 802 dytvlmcGDGaNDcgALkqAdvGis..Lseae.AsvaapFtSklasiscVtnvireGRaaLvtslqvFky.lalysliqfls.vliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpssn...llsvylllsvllqfvlvilslvllvfevkkqpwykeeev 966
                  + +v+  GDG+ND  AL++AdvG s  Ls  + A  a+  +        +++ +  GR+   +  +  ++ l  ++++  l+ ++ L+  +  l+ + +l+++l++ ++ al+l+ + p + L  +rp ++   l++  ++ ++ +q +  ++ lv + +   k+ +  e ++
  MMETSP1174-20130828|35828_1 701 GEIVGVTGDGTNDGPALRAADVGLSmgLSGTDvAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFqLTVNAVALILTfLTALAGYEPPLNAVMMLWVNLIMDTMGALALGTEAPTNALLDRRPLKRtapLVNRTMIRNIAVQSIYQLVLLVSMLKLGDKMFPGIELNS 873
                  679*********************94446666455667777666665555555667*****99887777623445555555514567777788***********************************7654449************99999998888887777766555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   6.9     1e-20   2.7e-18      47     287 ..     127     392 ..      93     460 .. 0.69
   2 !   29.4   0.0   2.9e-10   8.1e-08     354     408 ..     557     611 ..     529     617 .. 0.87
   3 !   50.5   0.4   1.2e-16   3.2e-14     430     527 ..     703     799 ..     696     812 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 1e-20
    TIGR01511  47 allivllllGrlleelakskaskalekLaklkpeeatllkkd.....vdveelqvgdilkvkpgekipvDGvvveGes.evdeslltGEslpvkkkvgdevi.aGtvngegsllvkvtkvgedtllaqivklveeAqqs...kakiqrlAdkvasl...fvpvviaiav..........lt....fviWllalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelse 287
                  a+l+++l +  ++ ++   + +k  +kL k++ +   ++k++     ++ +++ vgdi+ +++g+kip DGvv+e +    des ltGE++ ++k+ +++ + +G   + gs ++ v +vg ++   +i +++++  ++   + k+ +lA+++  +   f+ +  + a           +t    f + l ++++ vt++++a P +l LA+ ++++ +t  +     li+   a e++ +++ ++ DKTGTLT+ +++ ++     +
  MMETSP1174-20130828|35828_1 127 AILVAVL-VVAIVTAVNDYEKEKQFRKLNKVAEDILIKVKRNgevvqISTKQIVVGDIVLLESGDKIPGDGVVLESNVlSCDESDLTGEPVEIRKDHEHPFLlSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQEASNtplQDKLDTLANQIGWVgigFACL-TFAAQisvflttaeeITasklFDTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGD 392
                  4444433.3334444444444444555555555555555443111115568899********************9886379*****************9976155555566*********************9886555122446777777775431111111.11111000100011122111122345678999***************************9999******************************99886554444 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.9e-10
    TIGR01511 354 vakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                   +++ +l a++a+ d l+p++k+++++ +++gi v ++tGDn  +a+a+A+e gi
  MMETSP1174-20130828|35828_1 557 LETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGI 611
                  467788999*********************************************9 PP

  == domain 3    score: 50.5 bits;  conditional E-value: 1.2e-16
    TIGR01511 430 kvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYNviaipiAagvlvpiglllsPavaavam 527
                   v + GDG+ND paL+aadvg+++g +gtdva+ea+d+v+++d   ++++a+   r ++ +i++ l + l+ N +a+ +     +      +P + av+m
  MMETSP1174-20130828|35828_1 703 IVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDrFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTAL---AGYEPPLNAVMM 799
                  67789*******************968*************975389******************************988765444...334566666666 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   6.2   1.8e-20     5e-18      18     253 ..     122     385 ..     101     435 .. 0.77
   2 !   20.7   0.1   1.1e-07     3e-05     312     364 ..     559     610 ..     541     616 .. 0.88
   3 !   55.8   0.5   2.5e-18   6.8e-16     386     469 ..     704     787 ..     694     814 .. 0.84

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1.8e-20
    TIGR01512  18 llegallll...lfslgetLeelaskrakealkaLlelaPdtarrlee..eVaveelkvgdvvvVkkGervPvDGevlsges.sldesalTGEsvpvekakgde.vlaGainldgvlkievtkeaedstiakivklveeaqseka...ktqrlidrla...ekytlvvllialli...............alvssllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvs 253
                  ++eg+++l+   + ++ ++++++ +++  ++l++++e    +++r  e  +++++++ vgd+v++++G+++P DG+vl+ +  s des lTGE+v ++k +++  +l+G    +g+ +  v +   +s+  +i  ++ +++s+ +   k+ +l+++++     ++ + +++ + +               +++ s+++ ++++vva P +L ++v+++l+++ ++      li+  a+ e++++++ +  DKTGTLTk++++++
  MMETSP1174-20130828|35828_1 122 WIEGVAILVavlVVAIVTAVNDYEKEKQFRKLNKVAEDILIKVKRNGEvvQISTKQIVVGDIVLLESGDKIPGDGVVLESNVlSCDESDLTGEPVEIRKDHEHPfLLSGCNVTGGSATFVVIAVGPESQWGRIRAMLSQEASNTPlqdKLDTLANQIGwvgIGFACLTFAAQISVflttaeeitasklfdTVLESFIICVTIVVVAVPEGLPLAVTISLAYSTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKNEMTCV 385
                  56666554311145667788888888888888888888888888876611556789********************998775389**************9988726677777899******************99988877765522233334443321112233333333222200111111111111145566778899***********************************************************9987 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 1.1e-07
    TIGR01512 312 ldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                   + +l +l+a+ D +r+d+++a+a+ +++g+  + ++tGD+ a+a ++a+e G
  MMETSP1174-20130828|35828_1 559 TNLTLDALVAIMDPLRPDVKDAVAQCQRAGI-MVRMVTGDNIATATAIARECG 610
                  556677899*********************7.669****************99 PP

  == domain 3    score: 55.8 bits;  conditional E-value: 2.5e-18
    TIGR01512 386 vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgvl 469
                  v + GDG ND paL aAdvg++mG sg+dva e++D+v+++d+  ++++a+  +r +  ++++ + + lt+ +v+++l++l  l
  MMETSP1174-20130828|35828_1 704 VGVTGDGTNDGPALRAADVGLSMGLSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDNIRKFLQFQLTVNAVALILTFLTAL 787
                  5678****************************************************9999999999999999888777654333 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.6   5.8e-10   1.6e-07      56     128 ..     127     202 ..     117     206 .. 0.83
   2 !   16.6   0.1     1e-06   0.00027     348     398 ..     354     404 ..     304     437 .. 0.80
   3 !   50.7   0.1   4.9e-17   1.3e-14     515     675 ..     466     615 ..     446     621 .. 0.85
   4 !   14.0   0.2   6.2e-06    0.0017     773     884 ..     705     814 ..     697     939 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 5.8e-10
    TIGR01652  56 pLavvllvtaiKeaieDirrrksDkevNnkkvevlees...akfkeikwkdlkVGdivkvkkdeeiPaDllllsss 128
                  +++v +lv ai  a++D+ + k+ +++N+    +l +    +++++i  k++ VGdiv ++++++iP D ++l+s+
  MMETSP1174-20130828|35828_1 127 AILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILIKVkrnGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESN 202
                  44555666677789999999999999999888777664445999*****************************985 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1e-06
    TIGR01652 348 vrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkleevkda 398
                  +r +   e +G    i SDKTGTLT+N+m+      ag + +++ e+v +a
  MMETSP1174-20130828|35828_1 354 IRVLAACETMGNATNICSDKTGTLTKNEMTCVAGWFAGDEATSEPEKVFAA 404
                  5666778999*******************9888777777776666665555 PP

  == domain 3    score: 50.7 bits;  conditional E-value: 4.9e-17
    TIGR01652 515 vleFnSsrKRmsvivrlpddellLlcKGADsvifkrlseesekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlsee 675
                  v++F+SsrKRmsv++r++   +lL++KGA   ++   +   +  +++ ke l +  +e l  L   + +  ++ Y+     ++e ++  + ++      a  +E++L+l +  ai D L  +V++++++ ++Agi + ++TGD + TA++i+  c + +e+
  MMETSP1174-20130828|35828_1 466 VFPFSSSRKRMSVVLRNK---YLLYTKGASETVLAQCKF--KLGKDARKEFLTQSDREELFKL---MDQWANKSYRVLALAHTEVASGAAGDDT---PDASALETNLTLDALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGIFTED 615
                  89**************98...9*******9998888876..3456677778888889988777...5778888999988887777766665443...345679***************************************************9988775 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 6.2e-06
    TIGR01652 773 laigdGaNDVsmiqeAdvGv..GisGkEGkqAvmasDfaigqFrfLekL.lLvHGrwsYkRisklilyffyknlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivl 884
                     gdG+ND   + +AdvG+  G+sG+    A  asD+ i+  rf++ +  +v Gr  +  i k +++ +  n++  ++ f  + ++ +++   ++ +++   n+i  ++  ++l
  MMETSP1174-20130828|35828_1 705 GVTGDGTNDGPALRAADVGLsmGLSGT--DVAKEASDIVITDDRFVSIVkAVVWGRCVFDNIRKFLQFQLTVNAVALILTF-LTALAGYEPP--LNAVMMLWVNLIMDTMGALAL 814
                  5679***************83355555..47999*******9999876535788*******************98665555.5666667654..455555555555555555555 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   6.6   3.7e-12     1e-09      43     313 ..      99     380 ..      89     426 .. 0.65
   2 !   18.9   0.0   2.5e-07   6.9e-05     439     485 ..     565     611 ..     539     630 .. 0.84
   3 !   38.2   0.1   3.7e-13     1e-10     506     569 ..     699     763 ..     692     812 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 3.7e-12
    TIGR01497  43 lvtllvtiapalfgtkgknlrlfnaivtgilfitvlfanfaeavaeGrgkaqadalkktkketlakllskdgaikkvpadelkkGdvvlveaGdvipadGevieG.vasvdesaitGesapvlkesGgdf....asvtGGtrivsdwlvvevtadpGesfldrmialveGaerrktp.....neialtvllvaltlvfllvvatlyplaa....yagvkisvsvlvallvaliptti...GGllsa..iGia.GmdrvarfnviatsGraveaaGdvdtlvldktGtitlG 313
                  ++ l+v+  ++l++   +++     i  + + ++vl   +  av +     q   l+k+ ++ l k ++ +g++ +++++++  Gd+vl+e+Gd ip dG v+e  v s des +tGe   + k+    f      vtGG+        v +++ p es   r+ a++   e   tp     + +a ++  v + +  l   a + ++ +     + +k+  +vl ++++++    +    Gl  a  i +a   ++++  n +     a e+ G+   +  dktGt+t  
  MMETSP1174-20130828|35828_1  99 VIILCVSAVVSLGAGMYDDPD-KGWIEGVAILVAVLVVAIVTAVNDYEKEKQFRKLNKVAEDILIK-VKRNGEVVQISTKQIVVGDIVLLESGDKIPGDGVVLESnVLSCDESDLTGEPVEIRKDHEHPFllsgCNVTGGSAT-----FVVIAVGP-ESQWGRIRAMLS-QEASNTPlqdklDTLANQIGWVGIGFACLTFAAQISVFLTtaeeITASKLFDTVLESFIICVTIVVVavpEGLPLAvtISLAySTNQMMADNNLIRVLAACETMGNATNICSDKTGTLTKN 380
                  555666666666554444432.223334456789999999*******************9999886.6889********************************86388**********9999999888773333356666532.....33344444.344455555543.2333344111112333333334443333444444444433000123333434444444444322222112355444015555334566666666666789******************975 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.5e-07
    TIGR01497 439 GviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                   ++++ d +++ +k+  +q ++ Gi   m+tGdn  ta++ia+e G+
  MMETSP1174-20130828|35828_1 565 ALVAIMDPLRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIARECGI 611
                  57889999**************************************7 PP

  == domain 3    score: 38.2 bits;  conditional E-value: 3.7e-13
    TIGR01497 506 aeGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqllit 569
                  ++G +v +tGdGtnd pal  advg++m  sGt+ akea+++v  d     +++ v  G+ ++  
  MMETSP1174-20130828|35828_1 699 QDGEIVGVTGDGTNDGPALRAADVGLSMGlSGTDVAKEASDIVITDDRFVSIVKAVVWGRCVFDN 763
                  689*************************769***************9999999999888877654 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.11        29      17      51 ..     573     607 ..     566     612 .. 0.84
   2 !   10.8   0.0   0.00021     0.057     209     245 ..     706     743 ..     693     753 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.11
    TIGR00099  17 ispetkealaklrekGikvvlaTGRsykevkeilk 51 
                  ++p +k+a+a+ +  Gi v  +TG +   ++ i +
  MMETSP1174-20130828|35828_1 573 LRPDVKDAVAQCQRAGIMVRMVTGDNIATATAIAR 607
                  6799********************88777666665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00021
    TIGR00099 209 aiGDseNDieMleaagvgvamgna.neelkaladyvtd 245
                  + GD+ ND + l aa+vg +mg + ++ +k+++d v++
  MMETSP1174-20130828|35828_1 706 VTGDGTNDGPALRAADVGLSMGLSgTDVAKEASDIVIT 743
                  78********************7516666777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.67u 0.20s 00:00:01.87 Elapsed: 00:00:01.89
# Mc/sec: 689.28
//
Query:       MMETSP1174-20130828|35833_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-56  188.8   0.0    5.1e-56  188.1   0.0    1.2  1  TIGR02435 CobG: precorrin-3B synthase
    4.6e-26   89.2   0.0    1.8e-13   47.6   0.0    2.7  2  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component
    1.8e-25   86.9   0.0    8.9e-21   71.4   0.0    2.5  2  TIGR02042 sir: sulfite reductase, ferredoxin dependent
    4.1e-22   76.4   0.0    1.2e-15   55.2   0.0    2.4  2  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    4.4e-10   36.9   0.0    7.7e-09   32.8   0.0    2.3  2  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    5.1e-10   36.2   0.0    6.4e-07   26.0   0.0    2.4  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      3e-06   24.1   0.0    1.6e-05   21.8   0.0    1.9  2  TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.0   8.7e-59   5.1e-56      18     385 ..     133     557 ..     125     560 .. 0.86

  Alignments for each domain:
  == domain 1    score: 188.1 bits;  conditional E-value: 8.7e-59
    TIGR02435  18 llvRvrlvggiLtsaqvigLAelAerlgn..giievtaRanlQlRgla.adadalseallaagllaagaaadevrnvevsplaGidpgeiadtralaeelraalenek........alleLgpkfsvalDgGgrltllevtaDvrlkalkegd..gvalalslaGastsarll........vavapdaavevlvavlrvfvekgr.aarlrdlldeelvd.ealeeve..........................lkllpeaaegeakre.avaaaaplGlhpqadag.vtlGvglalGrltaaqlaelaelaqalGdgelrLtpwralLvlgvpeeraaaaqaalaalG...lvisasdprariaACtGapgCasaladtkadAealaaeleetvd....ltvHlsGCaksCAapgpaaltLvaae 385
                   ++R+rl++gi ++  +   A++ e +g   g+i++t+R n+Q+Rg+  +da  ++++l a g     +a d+vrn+++ plaGid +e++dtr++ e l+  +  +k        +  +L++kf+va+ g  +     + +D+ ++   +    ++ + + l+G    +r++             d av++  a+lr+f ++g+ + r + +l   + +  a+ee +                           k+   +     +   +   a+ lG+hpq ++g    G+ +++Grl+  +++++a la+++ ++e+rLt+ ++++++++ +e  +a +a     G   l++++ +   +++ CtGa+ C  a+++tk+ Aea+a+e+e++v       +H +GC +sC+++++a+++L+++ 
  MMETSP1174-20130828|35833_1 133 FMMRLRLPNGITNADSMRFYADSVEPYGPdlGVIDITTRQNIQMRGIDlGDAATIIDGLHARGQTSLHSALDNVRNMVGNPLAGIDEHEMIDTRPYCEALNDLISLNKetgergnpVWCNLPRKFNVAISGSRDDFAHTHINDIGFQPCPHATtgEMGFNIVLGGYMSIKRVAesvdmnlwMPGDVDCAVDLCAAILRIFRDEGNrKDRQKGRLMWLIESyGAVEE-VnghprchpsyrdavvaematygngyeEKIDEMQLLPTEPFDgGSPTARYLGIHPQPQEGlSRAGIHVPVGRLSVSEARSIADLAEKYSNSEVRLTVEQNVILPNIKNEDLEAFMAEPTLNGesrLRLEPGNISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVEHRVTtdrnVRIHWTGCPNSCGQAQAADIGLMGGP 557
                  599*************************65599*********************************************************************997554112222225679*********9999999999********87654444899********9999998665654332223467999*************9766666666665444133444.25999*******************999444444443333333034456679*********999**************************************************999888888778*******************************************9889999*********************986 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   3.1e-16   1.8e-13      61     298 ..     132     355 ..     124     363 .. 0.84
   2 !   38.2   0.0   2.2e-13   1.3e-10     366     483 ..     445     560 ..     389     568 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 3.1e-16
    TIGR02041  61 alllrvrlpGGvitpkqwlkldklarkyan..gslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnrnvlctsnpleselhrevyewakkisehllprtrayaeiwldekkvag..aeeeepilGktylprkfkiavavpplndvdvyandlgfvaiae.deklvGfnvliGGglslehGdkktyprlakvlGfveleellavaeavvttqrdfGnrtdrknarlkytierlGl 298
                   +++r rlp G+ +++      +  + y+   g + +ttrq  q+ Gi   + +++i  lh+ +  sl +a d  rn++   npl              i eh +  tr y e   d   ++   +e  +p++ +  lprkf +a++    +    + nd+gf    +     +Gfn+++GG +s+++  ++   +l  + G  +++ +++++ a++ + rd Gnr dr++ rl + ie+ G 
  MMETSP1174-20130828|35833_1 132 RFMMRLRLPNGITNADSMRFYADSVEPYGPdlGVIDITTRQNIQMRGIDLGDAATIIDGLHARGQTSLHSALDNVRNMV--GNPLAG------------IDEHEMIDTRPYCEALNDLISLNKetGERGNPVWCN--LPRKFNVAISGSRDDFAHTHINDIGFQPCPHaTTGEMGFNIVLGGYMSIKRVAESVDMNLW-MPG--DVDCAVDLCAAILRIFRDEGNRKDRQKGRLMWLIESYGA 355
                  599**********99988766666666765579********************************************76..689864............7778888899999988887666543388899**975..9********999888899********99987355679***********9988776555443.334..456789999**************************9984 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2.2e-13
    TIGR02041 366 kihkGdfritanqnliiaevsekekakiek...lakkyGlidgkvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGkapGr 483
                  k  + ++r+t +qn+i+ ++ +++ +   +   l  ++ l   +  ++  n ++c     c+lam e++     + +++++      ++d ++ +  tGcpn c++a  a+igl+G    +
  MMETSP1174-20130828|35833_1 445 KYSNSEVRLTVEQNVILPNIKNEDLEAFMAeptLNGESRLRL-EPGNISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVEH----RVTTDRNVRIHWTGCPNSCGQAQAADIGLMGGPAKK 560
                  556789************998877554433111333333433.788899999****************9988887777765....5578999***********************976555 PP

>> TIGR02042  sir: sulfite reductase, ferredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   9.1e-06    0.0054      69     172 ..     132     237 ..     122     252 .. 0.78
   2 !   71.4   0.0   1.5e-23   8.9e-21     223     510 ..     253     556 ..     240     563 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.1e-06
    TIGR02042  69 sfmlrtknpggkvpnqlyltlddladeyg..igtlrlttrqafqlhgvlkknlktvistivknlgstlgacgdlnrnvlapaapfkkkaeyefaketadniadlls 172
                  +fm+r++ p+g           d  + yg   g + +ttrq +q+ g+   +  t+i  +     ++l +  d  rn++  +    +  e   ++ + + + dl+s
  MMETSP1174-20130828|35833_1 132 RFMMRLRLPNGITNADSMRFYADSVEPYGpdLGVIDITTRQNIQMRGIDLGDAATIIDGLHARGQTSLHSALDNVRNMVGNPLAGIDEHEMIDTRPYCEALNDLIS 237
                  6**********9998888888888999*954589**********************99987666666777777777777655444455588888888888888876 PP

  == domain 2    score: 71.4 bits;  conditional E-value: 1.5e-23
    TIGR02042 223 lprkfkvavtvptdnsvdlftqdiglvvvsdekgelegfniyvggglgrthrkeetfarladplgyvpkedilaavkaivvtqrdygdrddrryarlkylisdwg.iek..........frevv..e.ey....fgkkiapvrelpefky......kdylgwheqg.dgklflglsvdsgrvkdegafqlkkalrevveky.kldvrltpnqniilydikpedkraittvlaqagllqpeavdp..lnrtamacpalplcglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgd 510
                  lprkf va++   d+    + +dig     + +    gfni  gg +      e+    l  p     + d+ aa   i+   rd+g+r+dr+  rl +li+++g +e           +r++v  e       +  ki+ ++ lp   +        ylg h q  +g    g++v  gr+         +++ ++ eky + +vrlt +qn+il +ik+ed +a  +  +  g +  + ++p  ++   ++c     cgla+ e++     i k v    e+   +d +v +  tgcpn c +   a++gl+g 
  MMETSP1174-20130828|35833_1 253 LPRKFNVAISGSRDDFAHTHINDIGFQPCPHATTGEMGFNIVLGGYMSIKRVAESVDMNLWMPGDVDCAVDLCAA---ILRIFRDEGNRKDRQKGRLMWLIESYGaVEEvnghprchpsYRDAVvaEmATygngYEEKIDEMQLLPTEPFdggsptARYLGIHPQPqEGLSRAGIHVPVGRLSV----SEARSIADLAEKYsNSEVRLTVEQNVILPNIKNEDLEAFMAEPTLNGESRLR-LEPgnISGNLVSCTGAQFCGLAMIETKNNAEAIAKEV----EHRVTTDRNVRIHWTGCPNSCGQAQAADIGLMGG 556
                  9****************************99999999************9999**99999999777778887765...66678*********************9533222233333337876633222312225578999999**877722332247*****9962688899*********98....4567789999**95679*****************988876544444444333.344115567899***************9999988877....555667999**********************995 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-07   0.00014      15      74 ..     127     188 ..     113     279 .. 0.87
   2 !   55.2   0.0     2e-18   1.2e-15      19     164 ..     418     559 ..     414     575 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.4e-07
    TIGR02912  15 tkergktairvrvpggileakylsllrdiaetygn..gkvhittrqgleipgikfedidevn 74 
                   ++ g+ ++r+r+p gi +a  + + +d  e yg   g + ittrq++++ gi++ d   + 
  MMETSP1174-20130828|35833_1 127 KRTPGRFMMRLRLPNGITNADSMRFYADSVEPYGPdlGVIDITTRQNIQMRGIDLGDAATII 188
                  5667999***************************65699***************98877665 PP

  == domain 2    score: 55.2 bits;  conditional E-value: 2e-18
    TIGR02912  19 gktairvrvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevnkllqpiiegleieqeevqkgysasgtrnvtacignrvcpfanydttklakriekav...fpsdyhlkialtgcpndcikarmadlgilgvtep 164
                  g + + + vp g l +     ++d+ae+y n +v +t+ q++ +p+ik ed++    + +p ++g    + e   g     + n+++c g + c  a  +t + a+ i k v     +d  ++i  tgcpn c +a+ ad+g++g    
  MMETSP1174-20130828|35833_1 418 GLSRAGIHVPVGRLSVSEARSIADLAEKYSNSEVRLTVEQNVILPNIKNEDLEAF--MAEPTLNGESRLRLE--PG---NISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVehrVTTDRNVRIHWTGCPNSCGQAQAADIGLMGGPAK 559
                  66677899****************************************9998865..457877764333222..23...34569**************9999887777777633346799************************96555 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.047        28      34     129 ..     136     234 ..     122     286 .. 0.63
   2 !   32.8   0.0   1.3e-11   7.7e-09      40     167 ..     430     555 ..     420     568 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.047
    TIGR02066  34 kagtpr.lvsvdtlrklcdiadkya..dGylritirnnveflvsdeskvqklideleklgf.pvGGtgdavagnivhtqgwlhcdipaidasgivkalmd 129
                  ++ +p+ + + d +r  +d  + y+   G + it+r+n++    d   +  +id l+  g   +    d v  ++ +  + +  +   id+     al d
  MMETSP1174-20130828|35833_1 136 RLRLPNgITNADSMRFYADSVEPYGpdLGVIDITTRQNIQMRGIDLGDAATIIDGLHARGQtSLHSALDNVRNMVGNPLAGIDEH-EMIDTRPYCEALND 234
                  55566556677788888888888874359999********999999999999999988553144555555555554444444433.34555555555555 PP

  == domain 2    score: 32.8 bits;  conditional E-value: 1.3e-11
    TIGR02066  40 lvsvdtlrklcdiadkyadGylritirnnveflvsdeskvqklideleklgf.pvGGtgdavagnivhtqgwlhcdipaidasgivkalmdelieyfteeklPakvrislsccasmcgavtasdiaivg 167
                  ++sv   r ++d+a+ky++  +r+t+ +nv     +++ ++ ++ e   +g   +    + + gn+v ++g   c ++ i++   + a+  e+ +  t +    +vri  ++c+++cg  +a+di ++g
  MMETSP1174-20130828|35833_1 430 RLSVSEARSIADLAEKYSNSEVRLTVEQNVILPNIKNEDLEAFMAEPTLNGEsRLRLEPGNISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVEHRVTTD---RNVRIHWTGCPNSCGQAQAADIGLMG 555
                  79****************************98877778888877776665541456667899******************************99998866...48********************9887 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00042      0.24     564     690 ..     137     278 ..     103     343 .. 0.71
   2 !   26.0   0.0   1.1e-09   6.4e-07     566     691 ..     426     554 ..     422     560 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00042
    TIGR02374 564 PrvyGGeinaedLrkiadiveeye..l.yvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalrtvktCvgsqfcryGq.............qdsvqLaielekryeg..lrtPhkiklgvsgCereCaeaalkDvGv 690
                   r++ G +na+++r  ad ve y+  l  + it  q +++ G+   d   i   L+  g +s h    al  v+  vg+      +             +d ++L  e  +r +    ++P k ++++sg   + a ++++D+G 
  MMETSP1174-20130828|35833_1 137 LRLPNGITNADSMRFYADSVEPYGpdLgVIDITTRQNIQMRGIDLGDAATIIDGLHARGQTSLH---SALDNVRNMVGNPLAGIDEhemidtrpycealNDLISLNKETGERGNPvwCNLPRKFNVAISGSRDDFAHTHINDIGF 278
                  58899******************63378899*************************99998555...566666666665444333200000000000113444444444444333224677777777777777777777777774 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.1e-09
    TIGR02374 566 vyGGeinaedLrkiadiveeyel.yvkitggqrldlfGvkkddLPkiwkd.LkeaglesghaygkalrtvktCvgsqfcryGqqdsvqLaielekrye.glrtPhkiklgvsgCereCaeaalkDvGvi 691
                  v+ G++   + r iad++e+y+   v++t  q + l  +k++dL     +   ++      + g+    + +C+g qfc     ++ + a ++ k  e  + t  ++++  +gC+  C +a+  D+G++
  MMETSP1174-20130828|35833_1 426 VPVGRLSVSEARSIADLAEKYSNsEVRLTVEQNVILPNIKNEDLEAFMAEpTLNGESRLRLEPGNISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVEhRVTTDRNVRIHWTGCPNSCGQAQAADIGLM 554
                  67799999999**********999********************987665134444455678888889999*********9998888888777777762478999**********************87 PP

>> TIGR02064  dsrA: sulfite reductase, dissimilatory-type alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.18     1e+02     318     366 ..     310     359 ..     286     377 .. 0.75
   2 !   21.8   0.0   2.7e-08   1.6e-05      90     222 ..     428     556 ..     411     566 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.18
    TIGR02064 318 fkveaeeeydeivelvekiidfWdeegkereri.Gelikrlglakflevi 366
                  +++ ++ ++d  v+l  +i+  + +eg+ ++r  G l++ +  +  +e +
  MMETSP1174-20130828|35833_1 310 MNLWMPGDVDCAVDLCAAILRIFRDEGNRKDRQkGRLMWLIESYGAVEEV 359
                  445678999*******************9998548888887766666655 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 2.7e-08
    TIGR02064  90 sGkfystkylrqlidvwekyGsGlvelhGstGdivllgtstevleeifeelr.elgtdlG.GsGsalrtaesCvGkalCefacydtlkafteltkeyqdelhrPafPykfkikvsgCPndCvaaiarsdfaviGt 222
                   G+ +s +  r ++d++eky    v l  +  +++l   ++e le+++ e + + +  l    G+   ++ sC G   C +a+ +t++    + ke++    r +     +i  +gCPn C++a+  +d++++G 
  MMETSP1174-20130828|35833_1 428 VGR-LSVSEARSIADLAEKYSNSEVRLTVE-QNVILPNIKNEDLEAFMAEPTlNGESRLRlEPGNISGNLVSCTGAQFCGLAMIETKNNAEAIAKEVEH---RVTTDRNVRIHWTGCPNSCGQAQ-AADIGLMGG 556
                  554.57778899********9999999766.5788888999999999998666555555414567777899************************9985...55667799**************9.89***9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.16s 00:00:00.78 Elapsed: 00:00:00.60
# Mc/sec: 1440.88
//
Query:       MMETSP1174-20130828|35832_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1527.30
//
Query:       MMETSP1174-20130828|35843_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1174-20130828|35844_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1174-20130828|35849_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 215.98
//
Query:       MMETSP1174-20130828|35856_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 277.18
//
Query:       MMETSP1174-20130828|35909_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-35  120.8   0.3    1.3e-35  120.5   0.2    1.2  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    7.4e-13   46.6   0.8    1.3e-12   45.8   0.6    1.3  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    2.2e-11   41.5   0.0    6.5e-11   40.0   0.0    1.6  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    4.2e-06   24.4   0.1    9.6e-06   23.3   0.0    1.6  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.2   1.3e-38   1.3e-35       1     185 []      20     204 ..      20     213 .. 0.97

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 1.3e-38
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdgv 185
                  gtT++   ++ gvvl ad+r+s g+++a+++ +Kv+ +dd i +  +Gs +d q++ ++++  +     + +++  vk++atl+  + +++k    l+ +++gG de +g+++y++   G +++  ++  GsGs++ +g +++ Y+e+++  e ++ + kai+ a++RD  sG  i+ ++++ +g+
  MMETSP1174-20130828|35909_1  20 GTTIMACCFDGGVVLGADSRVSTGTYIANRTSDKVVCLDDSIFMCRSGSAADTQAISDYVRYFLASHATEIGRRPLVKTAATLARRICYENKD-QLLAGIIIGGWDEiNGSSVYVVPLGGTMLKMPFAIGGSGSTYIYGHVDATYRENMTRAECQEFVKKAISHAMARDGSSGGVIRTCTVDASGM 204
                  7999999999*********************************************************************************99.899**********999******8888888999*******************************************************98875 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.6   1.2e-15   1.3e-12       2     183 ..      17     192 ..      16     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.2e-15
    TIGR03690   2 aphgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGG 183
                  ++ gtti+a  + gGv+l  d r ++G+ ia+r  +kv   d+   +  +G+a+ +  +    +  l+ +    G++  +++ a+    +  +n  + l G++    + G+d+ +  G  +     gg++ ++ ++  GsGs +  g +   y+e++++++  + + +a+  a   d ++GG
  MMETSP1174-20130828|35909_1  17 VSTGTTIMACCFDGGVVLGADSRVSTGTYIANRTSDKVVCLDDSIFMCRSGSAADTQAISDYVRYFLASHATEIGRRPLVKTAATLARRICYENKDQLLAGII----IGGWDEIN--GSSVYVVPLGGTMLKMPFAIGGSGSTYIYGHVDATYRENMTRAECQEFVKKAISHAMARDGSSGG 192
                  688****************************************999999999987766666666666555444454433455455444566788888888875....68**9865..55555667899******************************************999999999998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   6.3e-14   6.5e-11      24     216 ..      15     205 ..       6     215 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 6.3e-14
    TIGR03633  24 eavkrgttavGiktkegvvlivdkrit.sklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepieve...vlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale.eelkaeevevavveveekk 216
                  + v  gtt +   ++ gvvl +d r+     + +++ +k+  +Dd + ++ +G +aD++++ d+ r    ++    +    v+   +la++++  ++              ++i+G d+  +  ++    +G++l+   +  G+g++ +  +++ +y+e+++  e+ e+  ka+++a+  +  +   +  ++v+++  +
  MMETSP1174-20130828|35909_1  15 NEVSTGTTIMACCFDGGVVLGADSRVStGTYIANRTSDKVVCLDDSIFMCRSGSAADTQAISDYVRYFLASHATEIGRRPLVKtaaTLARRICYENKDQLL--------AGIIIGGWDEInGSSVYVVPLGGTMLKMPFAIGGSGSTYIYGHVDATYRENMTRAECQEFVKKAISHAMArDGSSGGVIRTCTVDASGMQ 205
                  568899*****************9986168999***********************************999999998877665222578888866655444........448******975889999999999999888777899*****************************9999735555556667777766555 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.4e-09   9.6e-06       1     153 [.      21     181 ..      21     187 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 9.4e-09
    TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgn.....laraavelakdWrtdkvlrkLealliv....adkeelllisGtgdviepeddviaiGsGgnyalaaarall..eetelsaeeiaekalk 153
                  tti+a   +g vv+++d +v+ g+ +  +++ kv  l ++++ +  +Gs+ad+ ++ + +   l +++ +     l+++a  la+    ++  + L  ++i     ++ ++++++   g +++    +   GsG++y +    a +  + t  + +e ++ka++
  MMETSP1174-20130828|35909_1  21 TTIMACCFDGGVVLGADSRVSTGTYIANRTSDKVVCL-DDSIFMCRSGSAADTQAISDYVRYFLASHATEigrrpLVKTAATLARRICYENKDQLLAGIIIGgwdeINGSSVYVVPLGGTMLKMPFAIG--GSGSTYIYGHVDATYreNMTRAECQEFVKKAIS 181
                  8*********************************887.6889999**************9999999887622222567777788777777666666655553222234455666666666665443332..466666655555555214455566677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 716.04
//
Query:       MMETSP1174-20130828|35936_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1635.97
//
Query:       MMETSP1174-20130828|35944_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-20   69.2   0.0    6.4e-20   68.9   0.0    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.1e-18   65.6   0.0    1.5e-18   65.2   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-17   61.2   0.0    2.6e-17   60.9   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    2.1e-16   57.8   0.0    2.8e-16   57.4   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.8e-15   52.9   0.0    9.2e-15   52.5   0.0    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    6.1e-14   50.1   0.0    7.9e-14   49.7   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.9e-10   38.4   0.0    2.6e-10   38.0   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.9e-10   38.5   0.0    2.8e-10   38.0   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    9.4e-09   32.9   0.0    3.4e-07   27.8   0.0    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.2e-07   27.7   0.0    6.5e-07   26.7   0.0    1.4  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.2e-05   21.7   0.0    4.7e-05   20.7   0.0    1.5  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    3.1e-05   21.0   0.0     0.0003   17.8   0.0    2.1  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00081   16.8   0.0     0.0013   16.1   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.014   12.4   0.0      0.019   12.0   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   2.2e-22   6.4e-20     410     599 ..      11     198 ..       3     212 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 2.2e-22
    TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                  k++  + a+vtGg+sGiG+ +a rl ++G  v+++ + ++ ++++  el ++f a  +  + +d+ +   + a+ +++  +   + ++  naG ++++ + +t   + + n +++   +  +++e +  l k ++ g + +++s   ++ ++ a  y+ +ka   h    la el + gi v  v P  v
  MMETSP1174-20130828|35944_1  11 KKYGAEWAIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSELSKRFPALSVTKVGVDLSKPGFMDAV-NQA-TEGKVIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPV 198
                  67778889*********************************************************987655544.443.33445899**************************************9999999999999*************************************************987 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   5.2e-21   1.5e-18       1     188 [.      18     205 ..      18     219 .. 0.88

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 5.2e-21
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkea..gvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr.sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtek 188
                  a+vtG+s giGk+ia++l ++g++v+i  +  e+ ++e+++el+++    ++++v +d+s+   ++++ +++e   + i++l +nAG    +++      + ++  +vn++   ++t++ +++++k + +G++   ss + +l ++  a Ya +Ka +  +  sla El s++i v +v P  +++ + ++
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAV-PEKMLDETVSELSKRfpALSVTKVGVDLSKPGFMDAVNQATE--GKVIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKtKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVKSRFYDH 205
                  79**************************66.778888888888885225677788889998887777665554..46799******************9********************99999998768***************************************************9999887665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0     9e-20   2.6e-17       3     190 ..      18     205 ..      16     223 .. 0.90

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 9e-20
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvs.dkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  a+vtG++ GiGk+iaerL   G++v+++ ++e+++ et++el+++     + k+ v  +k  + +av+qa+e    +++l  naG   ++ +++    + +   +vn+   l      ++++ k+k+kG +   +s a +  sp+ ++y+ tk  v  +  + a eL ++gi v    P  vk    ++
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSELSKRFPALSVTKVGVDlSKPGFMDAVNQATEG-KVIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVKSRFYDH 205
                  9*****************************************9986655555665542467889999999874.457999********************************999************************************************************99999999877665 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   9.6e-19   2.8e-16       4     185 ..      18     200 ..      15     206 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 9.6e-19
    TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraal.pimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrt 185
                  a+vtG +sGig+ ia++l  +G +v+++ + e+ ++++ +el+++  + +v+++ +d++k   ++ + +a++     +++L  nAG  + +   + p+ k ++  avn++  + ++++ + + +k +  G + + +s   +  s++ + Y  +K  +  +  +lA E  ++gi + ++ P+ v+ 
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSELSKRfpALSVTKVGVDLSKPGFMDAVNQATE--GKVIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVnRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVKS 200
                  89*****************************9999999888877544899***********96665444443..456899*********************************9998866266799999***************************************************98876 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.2e-17   9.2e-15       6     198 ..      18     211 ..      13     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 3.2e-17
    TIGR03206   6 aivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekgg..kaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmve.rkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseae 198
                  aivtgg+ gig +i  r+  +g +v ++ +  +  ++  +++ ++    +   v vd+++   +  av  a+e+   +++l  nag+ +   f +t  ++ +   a+n+   l + h  ++ +++ + +g +   +s a    s   a+ya  k  +  f  +la el  +gi v vv p p ++ +++   ++ae
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSELSKRFPalSVTKVGVDLSKPGFM-DAVNQATEGK-VIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKtKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVKSRFYDHAGEGAE 211
                  8****************************99888776666666654411556678888766555.5666666653.5899**********************************9998777766516689999999999999******************************************998887776665 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.7e-16   7.9e-14       3     184 ..      18     199 ..      16     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.7e-16
    TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlq.ekevegfdvavvkadvssfeeakaavakveaelG.pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmle.rgfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyia 184
                  a+vtGg+ GiG++i++rl ++G++v+   +p++   + + + +k++    v+ v +d+s+     +av++ +  +G  +++l  naG    ++f+     + ++  ++n++  +++t++ ++ +l+ ++ G +   ss   +      a y+ +ka +  f  +la e  ++g+ v v+ P  ++
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSElSKRFPALSVTKVGVDLSKPG-FMDAVNQAT--EGkVIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKtKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVK 199
                  89*****************************9998888876255677666666666666544.345555543..441589***************************************99987652778*************************************************998766 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   8.7e-13   2.6e-10       3     188 ..      18     190 ..      16     212 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 8.7e-13
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkv 188
                  ++vtG s G+G+++a++l +    +g+ ++++a  +++L e+  e+    +alsv +v +dl++      ++ a+++ ++ +  +  ll+ naG +   s  ++  +   + + + + n+   + lt e +  l +    +  v   ss + + p ++ a+Y  +ka    f   La e k e + v
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLS----QGINVIIVAVPEKMLDETVSELSKRFPALSVTKVGVDLSKPG----FMDAVNQATEGKVIQ--LLFCNAGFMIT-SMFAD--TPIGKTNANAAVNMSCHLELTHEYVNRLLK-TKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKsEGIDV 190
                  89***********9998776....**************************************9877....888998887777665..7899***8764.44444..445567888999***********9988873.4667789999************************9999*99998766655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   9.4e-13   2.8e-10       7     185 ..      17     197 ..      12     205 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 9.4e-13
    TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal..GrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGy 185
                   a+vtG ++G+G++ia  l + G +++ v+   + l+et +++++      ++++ +dl+++  ++  v++a+e    i  l  naG +  +   + +  + ++   vn+ + + l+++  ++llk+ +kg +   +s   +      + y+ +k  v  +  +la+e+ ++gi+v  + P  
  MMETSP1174-20130828|35944_1  17 WAIVTGGSSGIGKSIAERLLSQGINVIIVAvpEKMLDETVSELSKRfpALSVTKVGVDLSKPGFMD-AVNQATEGK-VIQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSP 197
                  69**********************998887224557899888887622345667889999999888.566666544.79*********9999999999889999999*****************************9999999999999***************************9999975 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.2e-09   3.4e-07       6     205 ..      18     204 ..      14     221 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.2e-09
    TIGR03971   6 alitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlark..advrk...leelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                  a++tG + G G++ a rl ++G ++i + + e++             ldet++ + +      + k  +d+ k   +++++++ e  v     + ++  naG +  +   +    + +    vn+    +  +  v  l+  k  G++  +ss a +   p+ a ya +k  +  +  +la el   gi v ++hP  v+ +  +
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKM-------------LDETVSELSKRFPALSVTKvgVDLSKpgfMDAVNQATEGKV-----IQLLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPVKSRFYD 204
                  8999999999999999999999999998887766.............34444443333333222220033333010344444444433.....67899****9999999899999999999******************************************************************************998765 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.2e-09   6.5e-07       5     184 ..      15     195 ..      11     206 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.2e-09
    TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkv....vgvegdvrllddhkeavarcveafgk.ldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalv..asrgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvap 184
                   e ++vtgg+sg+g+++ +r +++g +v ++   ++ l+e  ++ +++     v+ +g   +     +av++     gk ++ l  nag    s  + d p  + ++       +n+  +l   +  +  l+  +++g+v +t s a + p+   a+y+++k  v  +   la el    + v  v p
  MMETSP1174-20130828|35944_1  15 AEWAIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSELSKRFpalsVTKVGVDLSKPGFMDAVNQAT--EGKvIQLLFCNAGFMITS-MFADTPIGKTNAN----AAVNMSCHLELTHEYVNRLLktKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEgIDVCVVHP 195
                  57799*********************998887777776665555555550000444444444444555555544..4773688999***87655.5678887766554....3577777777777777776511578*************************99888888888888643255655555 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-07   4.7e-05       2     182 ..      19     198 ..      18     208 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.6e-07
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrv.avrevleadiaehgayyg.vvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapgli 182
                  +vtg s gig++ia +l ++g ++ +    ++   +e+v+++  +  + ++ k  v   +    +++  + a +g     +  nag    + f      + +a    n+    ++ h  v  +++++  g +   +s + ++       y+ +ka +     +la el +  i v  + p  +
  MMETSP1174-20130828|35944_1  19 IVTGGSSGIGKSIAERLLSQGINVIIVAVPEK-MLDETVSELSKRFPALSVTKVGVDLSKpGFMDAV--NQATEGKVIQlLFCNAGFMITSMFADTPIGKTNANAAVNMSCHLELTHEYVNRLLKTKTKGAVFYTSSPAWMLPSPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHPSPV 198
                  79**********************98776665.6799999999998888888877753330223333..334455544415678999999999888888888888889999999999999999999999999999999999999999999999999999999999999999999988888655 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-06    0.0003       3      65 ..      17      79 ..      15     130 .. 0.70
   2 ?    0.6   0.0      0.17        51     167     203 ..     159     195 ..     153     202 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1e-06
    TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavv.vkadlsnsa 65
                  a+vtG++  iG+sia++l ++G +v++     ++   + ++el ++ +  +v+ v  dls+  
  MMETSP1174-20130828|35944_1 17 WAIVTGGSSGIGKSIAERLLSQGINVIIVA-VPEKMLDETVSELSKRFPALSVTkVGVDLSKPG 79
                 59***********************99965.456666777888888888766653666887654 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.17
    TIGR02685 167 llgfslytmakealeGltrsaalelaslqirvngvap 203
                   ++ ++y+ +k  ++ +  s a el s +i v  v p
  MMETSP1174-20130828|35944_1 159 SPTAAMYAGTKAFVSHFGLSLACELKSEGIDVCVVHP 195
                  5555666666666666666666777776666666655 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.4e-06    0.0013       6      94 ..      18     105 ..      13     147 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.4e-06
    TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaak.slglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylp 94 
                  +i+tg ssg+g   a  l+++g   +++a  +    e +++ s  +p+ s t + +dl++   +   v+q    g+ ++ l cna   + 
  MMETSP1174-20130828|35944_1  18 AIVTGGSSGIGKSIAERLLSQGINVIIVAVPEKMLDETVSElSKRFPALSVTKVGVDLSKPGFM-DAVNQ-ATEGKVIQLLFCNAGFMIT 105
                  79********************777778877665555555436679************864433.33444.356999*******987664 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05     0.019       2      98 ..      19     124 ..      18     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.4e-05
    TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvv..Dklrk......gekllnlkdeeiadyidkeellerleke.elkkveavfHegAisdTteldgellmenNyeyskel 98 
                  ivTGg+  iG  ++ +l ++g++ i+v   +k+ +      ++++  l+ +++  +++k+ +++ +++  e k ++++f ++    T ++ ++ + ++N ++  ++
  MMETSP1174-20130828|35944_1  19 IVTGGSSGIGKSIAERLLSQGINVIIVAvpEKMLDetvselSKRFPALSVTKVGVDLSKPGFMDAVNQAtEGKVIQLLFCNAGFMITSMFADTPIGKTNANAAVNM 124
                  8********************7776653234555566666666999********************9996777889999999999999999999999998876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      182  (0.0443686); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.43
# Mc/sec: 884.02
//
Query:       MMETSP1174-20130828|35946_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-114  380.4   2.9   2.5e-114  380.2   2.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.8e-17   59.8   0.6    3.8e-17   59.8   0.4    1.5  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0081   14.1   0.1      0.013   13.4   0.1    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
      0.039   11.4  16.7       0.19    9.2   1.7    2.5  2  TIGR02642 phage_xxxx: uncharacterized phage protein


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.2   2.0  2.4e-117  2.5e-114       1     352 [.      99     474 ..      99     476 .] 0.94

  Alignments for each domain:
  == domain 1    score: 380.2 bits;  conditional E-value: 2.4e-117
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea.............sefgdigdifeeffggggg...........sgrrrskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptlegkvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleelae 352
                  d+Y  Lgv+++A+e+eik AYr++ak+ HPD+ + +++a +k+++in+Ay++L++++++++YD +g++gl g+a ++++++ +  +             ++  d++dif++ffggggg           ++r+r+ + +g+dl+++l+++++ a++G + +i++++ e+C+tC+G+Gak+g++ ktC+tCgG+G v+++++t+lg+fqsq+ C++C+GeG+ii e C +C Gkg+++++k++ + +PaGve+g++lrv+++G+a+ ngg++GdLy+ ++v+e+  f+r g+++++++ i +++ailg+e++++t++g+v+++ipag q+++vl+++gkG++kl    +rGd++v++kv++Pkklsk+e+el+ el++
  MMETSP1174-20130828|35946_1  99 DFYADLGVPRSATEREIKTAYRTQAKQCHPDVDR-SEQAMAKWRKINDAYNILNNPNQKKRYDMYGESGLLGAAEEAAEKMGKRPKgappgggfggpggAQQVDLSDIFDSFFGGGGGggagfgggmggQQRQRRGPVKGDDLRFDLKVDFKKACFGGKENIRIKHLENCDTCSGTGAKPGTSKKTCSTCGGQGMVMQVTRTPLGSFQSQAPCPQCRGEGTIIAEYCGTCVGKGVYQKQKEVVLTVPAGVETGQKLRVRDEGDASSNGGSPGDLYIFINVEEDAEFKRVGTEIYTSLDIPYLDAILGDEVQIKTIDGEVTMQIPAGSQPESVLKMRGKGAPKLGDLkSRGDHFVTLKVQIPKKLSKKERELVAELKS 474
                  9*********************************.999*********************************98887666655554477888777666554445599********9888899999998766666999**************************************************************************************************************************************************************************************************************988669*************************9986 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.4   3.7e-20   3.8e-17       2      71 ..      98     167 ..      97     174 .. 0.96
   2 ?   -2.9   0.0      0.32   3.3e+02     727     810 ..     369     454 ..     359     465 .. 0.73

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 3.7e-20
    TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGv 71 
                  +D+y  Lg+ r a e+eik a+r  ak+ hPD ++  +a   ++ in+a+++L nP++++ryD yG  G+
  MMETSP1174-20130828|35946_1  98 KDFYADLGVPRSATEREIKTAYRTQAKQCHPDVDRSEQAMAKWRKINDAYNILNNPNQKKRYDMYGESGL 167
                  7*****************************************************************9997 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.32
    TIGR03835 727 GDLkvvlkvipsnffqikeddlhvaalvDPlvaynGGiidvfgivklikvkieggikvndlvkikdlGl..tktkykkGsLivqlv 810
                  GDL + ++v +   f+    ++++   +  l a  G  +++ +i  ++ ++i++g + + ++k++  G   +     +G+ +v l 
  MMETSP1174-20130828|35946_1 369 GDLYIFINVEEDAEFKRVGTEIYTSLDIPYLDAILGDEVQIKTIDGEVTMQIPAGSQPESVLKMRGKGApkLGDLKSRGDHFVTLK 454
                  88888888887777777777888887787788888999999999999999999999999999998888833223446788888764 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.3e-05     0.013       6      54 ..     113     157 ..     110     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.3e-05
    TIGR00714   6 kaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRa 54 
                  + ++  yr   kq HPDv +s     +a+ +  ++N+Ay+ L +p ++ 
  MMETSP1174-20130828|35946_1 113 REIKTAYRTQAKQCHPDVDRSE----QAMAKWRKINDAYNILNNPNQKK 157
                  56788999999******55443....5799************9997665 PP

>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.3   0.00047      0.49     182     213 ..     265     297 ..     257     308 .. 0.84
   2 ?    9.2   1.7   0.00019      0.19     182     216 ..     308     340 ..     301     351 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00047
    TIGR02642 182 qkCPrCrgtgltlrrq.eeCdkCaGtGrlvptv 213
                  ++C  C gtg ++ +  + C +C+G G +++  
  MMETSP1174-20130828|35946_1 265 ENCDTCSGTGAKPGTSkKTCSTCGGQGMVMQVT 297
                  68***********999899********998765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00019
    TIGR02642 182 qkCPrCrgtgltlrrqeeCdkCaGtGrlvptvedl 216
                    CP+Crg g++    e C +C G G  +++ e +
  MMETSP1174-20130828|35946_1 308 APCPQCRGEGTII--AEYCGTCVGKGVYQKQKEVV 340
                  56*********97..589********988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1336.74
//
Query:       MMETSP1174-20130828|35963_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|35975_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1278.83
//
Query:       MMETSP1174-20130828|35984_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 272.23
//
Query:       MMETSP1174-20130828|35997_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1174-20130828|36007_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 494.96
//
Query:       MMETSP1174-20130828|36021_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1174-20130828|36083_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   14.8   0.0     0.0082   14.1   0.0    1.4  1  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     2e-06    0.0082       2      32 ..       2      32 ..       1      34 [. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2e-06
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergiv 32
                 ++++ is++   +++ eA +++++ +e+g+ 
  MMETSP1174-20130828|36083_1  2 SFSAAISACESCRQYGEADRVYQQAIESGFL 32
                 79999************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 345.50
//
Query:       MMETSP1174-20130828|36093_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 410.24
//
Query:       MMETSP1174-20130828|36124_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|36128_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1167.90
//
Query:       MMETSP1174-20130828|36158_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.44
# Mc/sec: 158.99
//
Query:       MMETSP1174-20130828|36160_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1499.02
//
Query:       MMETSP1174-20130828|36184_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|36198_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-10   36.1   2.5    1.2e-05   21.8   0.3    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    9.4e-07   26.6   0.3     0.0086   13.7   0.0    2.2  2  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
      2e-06   24.3   2.3     0.0012   15.2   0.4    2.1  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    2.4e-06   24.2   1.6     0.0032   13.9   0.0    2.1  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
     0.0041   13.9   0.4       0.61    6.8   0.0    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
     0.0077   14.4   1.2        1.8    6.7   0.0    2.3  2  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
  ------ inclusion threshold ------
      0.015   12.9   0.3        2.7    5.5   0.0    2.3  2  TIGR01008 rpsC_E_A: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   3.4e-06     0.002     545     589 ..      14      58 ..       6      72 .. 0.85
   2 !   21.8   0.3     2e-08   1.2e-05     533     614 ..      75     165 ..      65     179 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.4e-06
    TIGR03591 545 lseyaPrietikinkdkireviGkgGkvireiieetgakidiedd 589
                  +++     ++i+ +++ +++viG+gG++i++++ ++g++i+i+++
  MMETSP1174-20130828|36198_1  14 MEAAQHTSTVIECPQNVVGRVIGRGGETIKNLQLRSGCHIQIDQN 58 
                  55555566789999****************************986 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 2e-08
    TIGR03591 533 kmekvisepreelseyaPr....ietikinkdkireviGkgGkvireiieetgakidiedd......Gtvkiaaadkeaaekakklieeita 614
                  +++++++  +++++++ P     ++ti  +k+ +++viG+gG++i+++++++ga+i+i +d       +v+i ++  +++e a +l++++++
  MMETSP1174-20130828|36198_1  75 QVSQAVAMVNQKINDHGPStggtTQTIDCPKNLVGRVIGRGGETINDLQQRSGARIQILQDvpegtpCKVTINGT-PQTVEVALELVNDVIQ 165
                  467889999999999999723225789999****************************99877743334666654.4567888888888765 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1    0.0001      0.06       5      36 ..      27      58 ..      23      88 .. 0.66
   2 !   13.7   0.0   1.5e-05    0.0086      99     155 ..     107     171 ..      97     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0001
    TIGR03665  5 pkdrigvliGkkgevkkeieektkvkleidse 36
                 p++ +g +iG++ge+ k+++ + +++++id++
  MMETSP1174-20130828|36198_1 27 PQNVVGRVIGRGGETIKNLQLRSGCHIQIDQN 58
                 66666666666666666666666666666655 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.5e-05
    TIGR03665  99 ikgriIGeeGktrkiieeltgvkisvyg.......ktvsiiGeieqvkiareAiemlie.Gkkhs 155
                  + gr+IG++G t + +++ +g++i + +        +v+i G++++v++a e ++ +i+ G +h 
  MMETSP1174-20130828|36198_1 107 LVGRVIGRGGETINDLQQRSGARIQILQdvpegtpCKVTINGTPQTVEVALELVNDVIQhGPNHT 171
                  679*********************99763444444589************999998775376665 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   4.7e-05     0.028     570     649 ..      11      95 ..       6      98 .. 0.71
   2 !   15.2   0.4     2e-06    0.0012     558     619 ..      72     140 ..      60     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.7e-05
    TIGR02696 570 pdelsetaprviavkipvdkigevigpkgkvinsiqdetgaeisiedd...gt...vyigaadgdsaeaaraainaianptlpevg 649
                  p+ +       + ++ p + +g vig  g +i ++q  +g +i i+++   g    + ++  +  +  +a+a++n  +n + p+ g
  MMETSP1174-20130828|36198_1  11 PQTMEAAQHTSTVIECPQNVVGRVIGRGGETIKNLQLRSGCHIQIDQNypeGMprkITVSG-SILQVSQAVAMVNQKINDHGPSTG 95 
                  4555555555677899*****************************9863324311133333.234566788888888888887766 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2e-06
    TIGR02696 558 aildvlaeaidspdelsetapr....viavkipvdkigevigpkgkvinsiqdetgaeisiedd...gt 619
                  +il+v +++    +++ ++ p       ++  p + +g vig  g +in++q+ +ga i i +d   gt
  MMETSP1174-20130828|36198_1  72 SILQVSQAVAMVNQKINDHGPStggtTQTIDCPKNLVGRVIGRGGETINDLQQRSGARIQILQDvpeGT 140
                  57777777777777777777752222568999****************************988733355 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.4e-06    0.0032     200     243 ..      16      58 ..      11      87 .. 0.84
   2 !    9.8   0.2     9e-05     0.053     204     271 ..      97     167 ..      75     174 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.4e-06
    TIGR03319 200 vaestvsvvslpndemkGRiiGreGRniralEtltGvdliiDdt 243
                  +a++t +v++ p+ ++ GR+iGr G  i+ l    G  + iD+ 
  MMETSP1174-20130828|36198_1  16 AAQHTSTVIECPQ-NVVGRVIGRGGETIKNLQLRSGCHIQIDQN 58 
                  6788899999997.688************************974 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 9e-05
    TIGR03319 204 tvsvvslpndemkGRiiGreGRniralEtltGvdl.iiDd....tPeavilsgfdpvRreiArlalekLiaDG 271
                  t+++++ p+ ++ GR+iGr G  i  l +  G  + i+ d    tP+ v++ g  p   e+A   ++ +i+ G
  MMETSP1174-20130828|36198_1  97 TTQTIDCPK-NLVGRVIGRGGETINDLQQRSGARIqILQDvpegTPCKVTING-TPQTVEVALELVNDVIQHG 167
                  667777775.689*******************888455562222566677766.4556666666666666655 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.001      0.61      64     116 ..      16      67 ..       8      82 .. 0.84
   2 !    5.3   0.0     0.003       1.8      67     109 ..      96     137 ..      80     168 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.001
    TIGR03497  64 eatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkr 116
                   a++++  +++ ++++G+v+   Ge++++ +l ++  +++++++ p+ + rk 
  MMETSP1174-20130828|36198_1  16 AAQHTSTVIECPQNVVGRVIGRGGETIKNLQLRSG-CHIQIDQNYPEGMPRKI 67 
                  567788999*******************8777777.8999****999999975 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.003
    TIGR03497  67 gkklavkvgkellGkvldglGepldekelvkkkeklpleaepp 109
                  g++ ++ + k+l+G+v+   Ge++++ ++ ++ +++++ +++p
  MMETSP1174-20130828|36198_1  96 GTTQTIDCPKNLVGRVIGRGGETINDLQQRSG-ARIQILQDVP 137
                  5677899******************9777776.4444444444 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0077       4.5      97     135 ..      17      55 ..      12      59 .. 0.70
   2 !    6.7   0.0    0.0031       1.8      44      72 ..     108     136 ..     103     161 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0077
    TIGR01952  97 nskkvayvevepedkgvaiGkdGknierakelaeRhldi 135
                   +++  ++e  ++  g++iG++G++i++ +     h++i
  MMETSP1174-20130828|36198_1  17 AQHTSTVIECPQNVVGRVIGRGGETIKNLQLRSGCHIQI 55 
                  556667778888888899999999988776655555555 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0031
    TIGR01952  44 mgvAiGkgGanvkkveellgkkvelvees 72 
                  +g  iG+gG++++ ++++ g +++++++ 
  MMETSP1174-20130828|36198_1 108 VGRVIGRGGETINDLQQRSGARIQILQDV 136
                  68889999999999999999999998775 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0046       2.7      48      65 ..      30      47 ..      14      60 .. 0.79
   2 ?    5.2   0.1    0.0057       3.3      50      65 ..     109     124 ..      94     136 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0046
    TIGR01008 48 rpglviGrrGrrirelte 65
                   g viGr+G++i++l+ 
  MMETSP1174-20130828|36198_1 30 VVGRVIGRGGETIKNLQL 47
                 4588***********985 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0057
    TIGR01008  50 glviGrrGrrirelte 65 
                  g viGr+G++i++l++
  MMETSP1174-20130828|36198_1 109 GRVIGRGGETINDLQQ 124
                  78************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1045.49
//
Query:       MMETSP1174-20130828|36220_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|36231_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 301.10
//
Query:       MMETSP1174-20130828|36288_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.48
# Mc/sec: 426.21
//
Query:       MMETSP1174-20130828|36327_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 297.68
//
Query:       MMETSP1174-20130828|36339_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1240.70
//
Query:       MMETSP1174-20130828|36376_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1174-20130828|36386_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 226.27
//
Query:       MMETSP1174-20130828|36419_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   13.7   0.3     0.0027   13.5   0.2    1.0  1  TIGR00422 valS: valine--tRNA ligase
  ------ inclusion threshold ------
       0.01   12.7   0.0      0.011   12.6   0.0    1.2  1  TIGR03073 release_rtcB: release factor H-coupled RctB family protein


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   1.3e-06    0.0027     799     861 ..      35      97 ..      16      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-06
    TIGR00422 799 kvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekek 861
                  + ++  + ++p  +  ++ake ++l k++ k+ ke+ r ek+l  e+f+kka  ++++++ + 
  MMETSP1174-20130828|36419_1  35 DSESLQAAFLPFDKPVDAAKERQRLSKQATKIVKEVARLEKRLGCEGFLKKASPQIIQENVQA 97 
                  445555667777888899999**********************************99998765 PP

>> TIGR03073  release_rtcB: release factor H-coupled RctB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.1e-06     0.011     157     213 ..       9      67 ..       3     104 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.1e-06
    TIGR03073 157 hsGsrGlGqailrkhveefshnGlaenseeaeaylaehdkalafakenrqli..akrll 213
                  h+   G G+a l+++ +e  h+Gla++se+ +a +  +dk +  ake ++l   a +++
  MMETSP1174-20130828|36419_1   9 HANNPGSGEASLEEKTREEKHDGLAADSESLQAAFLPFDKPVDAAKERQRLSkqATKIV 67 
                  7888899************************************9999888742244454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 467.96
//
Query:       MMETSP1174-20130828|36433_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.54
# Mc/sec: 153.99
//
Query:       MMETSP1174-20130828|36443_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 229.04
//
Query:       MMETSP1174-20130828|36478_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.4   0.3      0.019   12.7   0.2    1.3  1  TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase


Domain annotation for each model (and alignments):
>> TIGR02432  lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   4.7e-06     0.019     103     163 ..     205     265 ..     192     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-06
    TIGR02432 103 iltAHhadDqiEtillrllrgsglkglsglkeirelekkiqivRPLlkiskkeieeylkee 163
                  +++   ++D  E++l++l +++ ++gl+g ++ ++++++   ++ ++k+sk+  e++ +ee
  MMETSP1174-20130828|36478_1 205 MVLDYRKNDLEEQMLMNLHKKAWTDGLKGRHYEEHQADNESTIKTMMKLSKEYNERVQEEE 265
                  5666789**********************87777777999**********99877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1324.15
//
Query:       MMETSP1174-20130828|36496_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1174-20130828|36513_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.0   0.1     0.0029   14.6   0.1    1.1  1  TIGR02321 Pphn_pyruv_hyd: phosphonopyruvate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02321  Pphn_pyruv_hyd: phosphonopyruvate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   7.1e-07    0.0029     115     198 ..      40     127 ..      21     132 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.1e-07
    TIGR02321 115 pkdtslraegrqelvrieef.qgkvaaaaaarkdrdfv..viar.vealiaglgqdeavrrglayeeagadailihskqktpdeilaf 198
                   + ts+ +  r elv++ e  q k++ + +a +  + v   +a+  ea +a  g+++   r  + eea a+ i +    k+ + i af
  MMETSP1174-20130828|36513_1  40 GRSTSIVSATRAELVKVSEAeQKKITNTLSADSTAEEVraALAKyYEAHVAKGGKEDDFDRKPTPEEATAERIAVTQMVKSGNTIGAF 127
                  5789*************886377888877777666665113444369*****************************999999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 788.46
//
Query:       MMETSP1174-20130828|36518_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|36537_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 690.74
//
Query:       MMETSP1174-20130828|36549_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 2011.10
//
Query:       MMETSP1174-20130828|36560_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1174-20130828|36570_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1174-20130828|36568_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          6    2.1  15.2        7.3    1.9  10.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  10.6    0.0018       7.3     681     811 ..     132     264 ..     116     281 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0018
    TIGR00927 681 ldplgearlskdkeeellqeeakltqtkkeeskde.eepaklpevtvtpapa.pedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekae.eeseGeieaerkgedegege 811
                  ++ ++ ar ++d   e+ + +ak  ++++++  +e e  +kl  v+ + a    +   d  ed  +  ++a a+ k+ r+ + ae++  ae+e ++ s + a +  e e+kae ++ e e  a+ k e++ + +
  MMETSP1174-20130828|36568_1 132 MEAVKAARHAQDLARESIRAAAKREEEAAKQRAEElEAESKLTGVSGAAAFFkRQMVTDSTEDNMATIKAAAARRKALREAKIAEKQRLAEAEGGKLSAEAAMRAIE-EQKAEqQRVEKEAAAKVKAEQKAKRD 264
                  56677889999988888777766665555444443155567777776666541466789999999999999999998888888888877888777766655543333.33333033344444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 930.52
//
Query:       MMETSP1174-20130828|36579_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1174-20130828|36583_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1174-20130828|36582_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 278.25
//
Query:       MMETSP1174-20130828|36586_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-20   68.6   0.0    2.6e-10   37.7   0.0    2.4  3  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
      0.029   11.1   0.0       0.16    8.6   0.0    1.8  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.52   1.1e+03      28      35 .]       3      10 ..       2      10 .. 0.80
   2 !   37.7   0.0   1.3e-13   2.6e-10       1      35 []      11      45 ..      11      45 .. 0.97
   3 !   28.6   0.0   9.6e-11     2e-07       1      34 [.      46      79 ..      46      80 .] 0.96

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.52
    TIGR00756 28 ergivPda 35
                  +g+ P++
  MMETSP1174-20130828|36586_1  3 QSGVQPNV 10
                 689***96 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 1.3e-13
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPda 35
                 v++n+ is++ k g++e++le+++eM+e+g++Pd+
  MMETSP1174-20130828|36586_1 11 VSFNAAISACQKGGKWEKGLEILEEMRENGVSPDV 45
                 79*******************************96 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 9.6e-11
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPd 34
                 +++++ i ++ k+g++  Alelf +Mk++g++Pd
  MMETSP1174-20130828|36586_1 46 ISFSAAITACEKSGEWQRALELFGRMKRDGVRPD 79
                 58999****************************9 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0    0.0097        20     220     250 ..       4      35 ..       1      39 [. 0.78
   2 ?    8.6   0.0   7.8e-05      0.16     217     248 ..      36      68 ..      31      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0097
    TIGR02928 220 gvlddeviplvaalaaqeh.GdaRkAidlLre 250
                  + ++ +v+ + aa++a ++ G   k++++L+e
  MMETSP1174-20130828|36586_1   4 SGVQPNVVSFNAAISACQKgGKWEKGLEILEE 35 
                  568899*******9986653788899999876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 7.8e-05
    TIGR02928 217 fkdgvlddeviplvaalaaqeh.GdaRkAidlL 248
                  ++++ ++ +vi + aa++a e+ G+  +A++l+
  MMETSP1174-20130828|36586_1  36 MRENGVSPDVISFSAAITACEKsGEWQRALELF 68 
                  678899***********998877********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1174-20130828|36664_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1174-20130828|36670_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1174-20130828|36686_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1174-20130828|36718_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 242.69
//
Query:       MMETSP1174-20130828|36716_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-14   51.8  15.8    8.3e-13   46.4   5.8    2.6  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
     0.0056   14.6   1.2     0.0056   14.6   0.8    2.7  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   5.8     4e-16   8.3e-13       3     106 ..      34     148 ..      32     151 .. 0.84
   2 !    9.3   0.6   0.00014      0.28      36      67 ..     156     187 ..     148     192 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 4e-16
    TIGR01100   3 gvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkeke.........kys..lykgfihlgaGlavGlsglaaGlaiGivGda 106
                  g+ G+a  l +s++Gaa+G   +g  +   +v  p +  k++i v++    aiyG+++a+++ +++++ke         +y+   y+g++ +++Gl+vGl+ la+G+a+Gi+G +
  MMETSP1174-20130828|36716_1  34 GYYGIAFGLGLSVVGAAWGIWLTGSVLVGSAVKAPRVQSKNLISVIFCEATAIYGVILAIILLTKMTTKEmahempddyEYDtfYYAGYAVFSSGLSVGLTNLASGIAVGIAGSS 148
                  7889999999***************************************************99988765422222221123222579*************************976 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00014
    TIGR01100  36 rpelilksiipvvmaGiiaiyGlvvavliags 67 
                   ++l +k +i  ++a  ++i+G++v ++ +++
  MMETSP1174-20130828|36716_1 156 DANLFVKILIVEIFASALSIFGIIVGIIQSNN 187
                  578999*********************98876 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.8   2.7e-06    0.0056       3      56 ..      47      96 ..      45      97 .. 0.87
   2 ?   -0.7   2.8      0.15   3.2e+02      28      54 ..     157     183 ..     134     184 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.7e-06
    TIGR01260  3 iGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLlll 56
                 +Gaa Gi + g+  + sa +     + +++k +i +   +a++i++v +a++ll
  MMETSP1174-20130828|36716_1 47 VGAAWGIWLTGSVLVGSAVKA----PRVQSKNLISVIFCEATAIYGVILAIILL 96
                 799999998888888888875....57899999******************997 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.15
    TIGR01260  28 gllrtkmfivaglvdaipiiavviaLl 54 
                  ++l +k++iv   + a +i+++ ++++
  MMETSP1174-20130828|36716_1 157 ANLFVKILIVEIFASALSIFGIIVGII 183
                  57889999*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 849.13
//
Query:       MMETSP1174-20130828|36734_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|36769_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 655.69
//
Query:       MMETSP1174-20130828|36778_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|36810_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|36821_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-13   48.1   0.7    4.1e-13   47.8   0.5    1.0  1  TIGR01384 TFS_arch: transcription factor S
      5e-12   43.9   0.4    5.4e-12   43.8   0.3    1.2  1  TIGR01385 TFSII: transcription elongation factor S-II
     0.0039   15.4   1.2      0.028   12.6   0.4    2.2  2  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family
     0.0074   14.2   2.4       0.42    8.6   0.0    3.0  3  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
  ------ inclusion threshold ------
      0.015   13.5   1.6        2.2    6.5   0.0    2.7  2  TIGR00280 L37a: ribosomal protein L37a
      0.022   10.9   0.1      0.023   10.8   0.1    1.1  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
        0.6    8.3   9.1        8.2    4.6   2.5    3.0  3  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family


Domain annotation for each model (and alignments):
>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.5     7e-16   4.1e-13       2      96 ..       5     104 ..       4     107 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 7e-16
    TIGR01384   2 fcpkcgslmvpkeG....kykctkcGyekekkkkeklkvtekvkekkketilveeeeletlp.tkiecpkcknkeyywlk.qtrr.depetrfykckkcgkv 96 
                  fcp  g+l++ ++G    ++ c+ c y++    + ++ +++ vk++  + ++   +  + ++ t+  cp+c+++e y+++ q r+ dep + fykc +cg +
  MMETSP1174-20130828|36821_1   5 FCPWDGALLTVEHGavqiQFLCPVCPYKHAI-VDRNVATVHTVKKQ-VDDVMGGAKAWQNVDrTEHLCPNCGHREAYFMQiQIRSaDEPMSTFYKCVECGVR 104
                  9********99888777789********998.44556666666666.45667677777777657778******99776654888559************975 PP

>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.3   9.1e-15   5.4e-12     260     296 ..      68     104 ..      15     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 9.1e-15
    TIGR01385 260 FkCGkCkkkkvtYyqlqtRSaDEPmttfvtCveCgNr 296
                    C  C++++  + q+q RSaDEPm tf  CveCg r
  MMETSP1174-20130828|36821_1  68 HLCPNCGHREAYFMQIQIRSADEPMSTFYKCVECGVR 104
                  56********************************976 PP

>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   1.2e+02       4      19 ..      26      38 ..      19      60 .. 0.71
   2 !   12.6   0.4   4.8e-05     0.028       4      37 ..      70     104 ..      68     107 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.21
    TIGR03655  4 CPFCGgadvslreged 19
                 CP C ++   ++  + 
  MMETSP1174-20130828|36821_1 26 CPVCPYKHA-IV--DR 38
                 888887777.33..23 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 4.8e-05
    TIGR03655   4 CPFCGgadvslre...geddldeveivaveCktCgas 37 
                  CP CG  + ++ +   +  d   ++++  +C +Cg++
  MMETSP1174-20130828|36821_1  70 CPNCGHREAYFMQiqiRSADEPMSTFY--KCVECGVR 104
                  *********999955444444455666..9*****97 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.35   2.1e+02      29      32 ..      26      29 ..      21      42 .. 0.73
   2 !    8.6   0.0   0.00071      0.42      22      36 ..      64      77 ..      56      88 .. 0.78
   3 ?    3.9   0.1      0.02        12       6      14 ..      96     104 ..      92     108 .] 0.82

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.35
    TIGR02605 29 CPeC 32
                 CP C
  MMETSP1174-20130828|36821_1 26 CPVC 29
                 6666 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00071
    TIGR02605 22 sddplasCPeCgsee 36
                 +   ++ CP+Cg+ e
  MMETSP1174-20130828|36821_1 64 DR-TEHLCPNCGHRE 77
                 44.7889*****966 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.02
    TIGR02605   6 YrCtaCghe 14 
                  Y+C +Cg +
  MMETSP1174-20130828|36821_1  96 YKCVECGVR 104
                  999999985 PP

>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0037       2.2      34      69 ..      21      58 ..      10      63 .. 0.81
   2 ?    4.8   0.3     0.013       7.7      15      46 ..      74     105 ..      62     108 .] 0.72

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0037
    TIGR00280 34 kkkykCkvCgkka..vkrestgiWkCrkCgakvaGGay 69
                 + ++ C+vC  k+  v r+ +++ + +k    v GGa 
  MMETSP1174-20130828|36821_1 21 QIQFLCPVCPYKHaiVDRNVATVHTVKKQVDDVMGGAK 58
                 55899****87644499************99****985 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.013
    TIGR00280  15 GpryGlkvrravkkieikqkkkykCkvCgkka 46 
                  G r    ++ +++  ++ +   ykC  Cg + 
  MMETSP1174-20130828|36821_1  74 GHREAYFMQIQIRSADEPMSTFYKCVECGVRD 105
                  55555556778888888888889999998765 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     4e-05     0.023     335     377 ..      46      88 ..      16     106 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4e-05
    TIGR03336 335 lgleksvevekkvkkelparPpslCagCphratfyalkkvaek 377
                  ++++++  +  + + + + r   lC+ C hr +++   ++ + 
  MMETSP1174-20130828|36821_1  46 VKKQVDDVMGGAKAWQNVDRTEHLCPNCGHREAYFMQIQIRSA 88 
                  333333333345555667899*************987666644 PP

>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.5     0.014       8.2      10      44 ..      26      75 ..      21      79 .. 0.63
   2 ?    4.2   2.8     0.019        11       8      43 ..      68     102 ..      61     103 .. 0.71
   3 ?    3.4   0.2     0.034        20       9      17 ..      97     105 ..      92     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.014
    TIGR04165 10 CPkCGskDKdvsrkfddehkae...............aevgeikCskCGy 44
                 CP+C  k   v r+    h  +                   e  C +CG+
  MMETSP1174-20130828|36821_1 26 CPVCPYKHAIVDRNVATVHTVKkqvddvmggakawqnVDRTEHLCPNCGH 75
                 77777777777776666665555566677777666443333445777777 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.019
    TIGR04165   8 kkCPkCGskDKdvsrkfddehkaeaevgeikCskCG 43 
                  + CP+CG +     +  +    +e      kC +CG
  MMETSP1174-20130828|36821_1  68 HLCPNCGHREAYFMQIQIR-SADEPMSTFYKCVECG 102
                  569***9998777776666.5555566666788887 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.034
    TIGR04165   9 kCPkCGskD 17 
                  kC +CG +D
  MMETSP1174-20130828|36821_1  97 KCVECGVRD 105
                  899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|36834_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 994.99
//
Query:       MMETSP1174-20130828|36878_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-15   54.7   0.2      3e-15   54.5   0.1    1.1  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
      6e-05   20.8   0.1    6.3e-05   20.7   0.0    1.1  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   1.5e-18     3e-15     117     166 ..       2      47 ..       1      56 [. 0.84

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.5e-18
    TIGR01416 117 tHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpyk 166
                  tHLGC+  +++     + ++CpCHgs+yd++g+vv+g PaP  la+ + +
  MMETSP1174-20130828|36878_1   2 THLGCVVPWNKA---ANKYMCPCHGSQYDQNGKVVRG-PAPLSLAIAHVE 47 
                  9****9868844...456*******************.*******98766 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.1e-08   6.3e-05      59      99 ..       2      40 ..       1      57 [. 0.85

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.1e-08
    TIGR02694 59 thkGcpvsyeadaktfkcpchfsvfdpekaGqqvlGqaten 99
                 th Gc v +++ a+++ cpch s +d  ++G+ v G a   
  MMETSP1174-20130828|36878_1  2 THLGCVVPWNKAANKYMCPCHGSQYD--QNGKVVRGPAPLS 40
                 8**********************998..5688888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|36884_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|36938_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1174-20130828|36943_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   21.7   0.0    2.9e-05   21.3   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
    0.00015   18.5   0.0     0.0002   18.2   0.0    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-08   2.9e-05      70     156 ..      85     169 ..      72     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.4e-08
    TIGR03516  70 GfwyaykkkdttetktpetgDlvsfeyeikaldg..dviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGd 156
                  G    y+   ++++  p  g+lv   ++     +  d i ++    p  y+v   +li+G+ +++klmk g    + +P   a+G  G 
  MMETSP1174-20130828|36943_1  85 GIK--YNIVREGDGPNPAVGELVAIRFKGSYKGNafDDILTE--GEPYYYRVGSFNLIKGIEEAVKLMKIGSRWELEIPGDLAFGAKGR 169
                  444..4555677888888899888777644333311455555..55899************************************9886 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   9.7e-08    0.0002     150     206 ..     100     158 ..      89     166 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 9.7e-08
    TIGR00115 150 ekgDivtidfegkvdGeafeg..gkaedfelelgsgqfipgfeeqlvGmkaGeekeikv 206
                  + g  v i f+g+ +G+af+   +++e + + +gs ++i+g+ee++  mk+G   e+++
  MMETSP1174-20130828|36943_1 100 AVGELVAIRFKGSYKGNAFDDilTEGEPYYYRVGSFNLIKGIEEAVKLMKIGSRWELEI 158
                  56899***************944577889***********************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 807.46
//
Query:       MMETSP1174-20130828|36952_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   25.8   1.3    1.5e-06   25.6   0.9    1.0  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.9   3.6e-10   1.5e-06      24      55 ..      20      51 ..      16      55 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3.6e-10
    TIGR00599 24 dtslRChvCkdffkaPvltsCsHtFCslCiRr 55
                 d++lRC +C    ++Pv  +CsH FC +C+ +
  MMETSP1174-20130828|36952_1 20 DETLRCAICLGSPENPVKLPCSHQFCRICVDD 51
                 789**************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1174-20130828|36963_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   54.4   0.1    1.6e-07   28.7   0.1    2.3  2  TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase)


Domain annotation for each model (and alignments):
>> TIGR00744  ROK_glcA_fam: ROK family protein (putative glucokinase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   3.9e-11   1.6e-07       2     160 ..       9     167 ..       8     214 .. 0.74
   2 !   23.8   0.0   1.2e-09   5.1e-06     232     309 ..     222     306 ..     180     314 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.9e-11
    TIGR00744   2 gvdiGGttiklgvvdee.gnilskwkvptdttdetivvaiakivdskldeldksdheivaiGiGapGpvnlea.....gevyeavnldWkqealkeklea....evglPvvvendanvaalGekkk..GaGdGakdvilitlGtGlGGGiiangeilrGhnGagaeiGhir 160
                  gv+ GGt   +++ +    ni ++ + pt t +e +   ia              ++  ++Gi   Gp++l++     g +  ++ + W ++ +  k+      + + Pv  e d n+ a+ e+      G   + v  +t+GtG G G++  g  ++G     +e Ghi 
  MMETSP1174-20130828|36963_1   9 GVEAGGTSFVVAIAEGTpDNIVERADFPTTTPEEVMDKCIAWLKV----------RKFDSLGIASFGPIDLHThsktyGFITSTPKVLWTNTDVLGKIVRglglKQNFPVAWETDVNAPAMAEYDIlhSRGTPVDSVAYVTVGTGCGIGLVFRGMPVHGLL--HGEGGHIS 167
                  677788888877777542577777777776666655555543322..........23457899999999987633333567789*******98555544312226778***************975116677789************************75..34556654 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.2e-09
    TIGR00744 232 veevakylglvladlasllnPskivlGGGlsdaGelllekikkeykkll.....ftrarqaad.....ivaaqlGndaGvvGaadlak 309
                   +  a+yl+ ++a+   l  P+kivl GG+ +   +l  ki++  +++l     ++  r ++d     iv ++ Gn+aG++Ga  + k
  MMETSP1174-20130828|36963_1 222 WDVAAHYLACLCANTILLCSPEKIVLSGGVLKR-SILFPKIRERTRRYLnsyidVP--RLTTDkidqvIVPSDYGNNAGIIGALFIGK 306
                  567799************************886.6888899887776652222223..333332223377899**********88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 1588.27
//
Query:       MMETSP1174-20130828|37002_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1174-20130828|37007_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 708.83
//
Query:       MMETSP1174-20130828|37023_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1174-20130828|37081_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1174-20130828|37105_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.061   10.7   1.6      0.059   10.7   1.1    1.0  1  TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
      0.072   10.3   1.7      0.074   10.3   1.2    1.0  1  TIGR01500 sepiapter_red: sepiapterin reductase
       0.23    9.0   3.6       0.41    8.2   2.5    1.4  1  TIGR01009 rpsC_bact: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR00154  ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   4.4e-05     0.059     199     240 ..      13      54 ..       2      61 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.4e-05
    TIGR00154 199 llkkieekllkklkselkNdlekvvlkahqevaqvlkvlkea 240
                   +++ +  l +k++++  Nd++ v ++a  +v+q++k l+e 
  MMETSP1174-20130828|37105_1  13 EIQQLKASLDEKVDQKQLNDVKDVMIEANGQVQQLRKILEEK 54 
                  4788899999***************************99765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.2   5.4e-05     0.074      37      86 ..      10      60 ..       2      61 .] 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.4e-05
    TIGR01500 37 ndeaLkeskaeieaevsalsvdlv.sldleaakdvedllkaleesikkeey 86
                  ++ ++++ka+++ +v++++++ v  + +ea  +v++l k+lee+  ++++
  MMETSP1174-20130828|37105_1 10 GNDEIQQLKASLDEKVDQKQLNDVkDVMIEANGQVQQLRKILEEKVDQKQL 60
                 568899999999999999988655156778888899999999999887765 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.5    0.0003      0.41      76     131 ..       5      57 ..       2      61 .] 0.79

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0003
    TIGR01009  76 vigkkg.keieklkkelkklvgskevkinikevkkpeldaklvaeeiakqlekRvsf 131
                  v++k+g  ei++lk++l+++v++k    ++++vk+++++a+   +++ k le++v  
  MMETSP1174-20130828|37105_1   5 VMKKEGnDEIQQLKASLDEKVDQK----QLNDVKDVMIEANGQVQQLRKILEEKVDQ 57 
                  667766258*************55....45799999999999899999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       500  (0.121892); expected 82.0 (0.02)
Passed bias filter:                      301  (0.0733788); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 236.80
//
Query:       MMETSP1174-20130828|37247_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.6e-127  421.3  14.7     1e-126  420.8  10.2    1.1  1  TIGR00065 ftsZ: cell division protein FtsZ
  ------ inclusion threshold ------
      0.065    9.4   0.5      0.091    8.9   0.4    1.1  1  TIGR00593 pola: DNA polymerase I


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.8  10.2  5.1e-130    1e-126      18     334 ..      92     405 ..      78     422 .. 0.95

  Alignments for each domain:
  == domain 1    score: 420.8 bits;  conditional E-value: 5.1e-130
    TIGR00065  18 akikVvGvGGgGnNavnrlveeevegvefiavNtDaQaLkkkkaekkiligkeltkGLGaGgnPeiGrkaAeeskdeikkllegadlvfitaGlGgGTGTGaaPvvakiakelgiLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk.lplkeafkvadevlvkavkgiselItkpglinvDFaDvravmskkGvaligigeakgedkakraeeavrkaisspllekakisgakgvlvnitggadltleeaeeiveiikseldqeanviwgasideeledelrvtvvatgvksqkevesek 334
                    ikV+GvGGgG+Navnr+ve++++gvef+ vNtDaQaL+k++a++++ ig  +t+GLGaGgnP +G++aA+es+dei + ++gadlvf+taG+GgGTG GaaPvva++ak++g+Ltv+vvtkPf fEg+kr+++A++ + eL+++vD+liv+ Ndkll++vp+ +pl +af vad++l+++v gise+I kpglinvDFaDvravm ++G+al+gig+ kg+    ra++a+ +aisspll+   i+ a+g+++ni+gg+dltl+e++ ++e+i++++d++an+i+ga +d+e+e e+ +tv atg++ +       
  MMETSP1174-20130828|37247_1  92 CIIKVIGVGGGGGNAVNRMVETNINGVEFWTVNTDAQALEKSTAKNTLNIGGIVTRGLGAGGNPSVGKSAADESRDEIAAVVRGADLVFVTAGMGGGTGSGAAPVVAEVAKDMGALTVGVVTKPFGFEGRKRMQQANDAIAELQSKVDTLIVVSNDKLLQIVPEnTPLADAFLVADDILRQGVVGISEIIVKPGLINVDFADVRAVMGDAGTALMGIGTGKGKT---RAQDAAVAAISSPLLDFP-INKAQGIVFNIVGGNDLTLQEINAAAEVIYENVDNDANIIFGALVDSEMESEVSITVLATGFELDVGSLVGA 405
                  68*****************************************************************************************************************************************************************99**********************************************************9...788*************99.**************************************************************9876655443 PP

>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   4.5e-05     0.091     108     191 ..     227     309 ..     219     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 4.5e-05
    TIGR00593 108 ADDviatLakkaekegyevviisgDkDllQlvsdnvkvlkl....kgktelteltaeavvekygvtpeqlvdlkaLvGDkSDnipGvk 191
                  A D ia L  k+     + +++s+Dk llQ+v +n  ++++    ++  +   +   +++ k g+    ++d++a++GD+   + G+ 
  MMETSP1174-20130828|37247_1 227 ANDAIAELQSKVD----TLIVVSNDK-LLQIVPENTPLADAflvaDDILRQGVVGISEIIVKPGLINVDFADVRAVMGDAGTALMGIG 309
                  7788888877776....556667776.9**********999888777778889999************************99999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1735.27
//
Query:       MMETSP1174-20130828|37273_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 466.36
//
Query:       MMETSP1174-20130828|37281_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1174-20130828|37310_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   15.1   0.1     0.0027   15.1   0.1    1.1  1  TIGR01929 menB: naphthoate synthase
     0.0028   14.9   0.1     0.0028   14.9   0.1    1.0  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
  ------ inclusion threshold ------
       0.04   10.8   0.0      0.041   10.8   0.0    1.1  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase


Domain annotation for each model (and alignments):
>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     2e-06    0.0027      51      68 ..      10      27 ..       4      47 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2e-06
    TIGR01929 51 viltGaGdkafcsGGdqk 68
                  ++ GaG+kafc+GGd k
  MMETSP1174-20130828|37310_1 10 FVMKGAGGKAFCAGGDVK 27
                 5899************87 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     2e-06    0.0028      49      68 ..       9      28 ..       4      50 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2e-06
    TIGR03210 49 vivlagagdkafctggdqst 68
                 + v+ gag kafc+ggd  +
  MMETSP1174-20130828|37310_1  9 AFVMKGAGGKAFCAGGDVKA 28
                 6899*************765 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     3e-05     0.041      74      94 ..       8      28 ..       3      39 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3e-05
    TIGR03200 74 aavvftavgdkafctggntke 94
                 aa v+ ++g kafc+gg+ k 
  MMETSP1174-20130828|37310_1  8 AAFVMKGAGGKAFCAGGDVKA 28
                 578999***********9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 189.07
//
Query:       MMETSP1174-20130828|37302_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-142  473.6   0.0   2.3e-142  473.2   0.0    1.1  1  TIGR01134 purF: amidophosphoribosyltransferase
    3.1e-20   70.0   0.1      5e-20   69.3   0.1    1.3  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
    4.9e-15   53.3   0.0    6.9e-15   52.8   0.0    1.2  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    0.00011   18.3   0.0    0.00034   16.8   0.0    1.7  2  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    0.00016   18.6   0.0    0.00029   17.7   0.0    1.4  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    0.00056   17.7   0.0     0.0011   16.7   0.0    1.5  1  TIGR00201 comF: comF family protein
    0.00059   16.4   0.0       0.02   11.4   0.0    2.0  2  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
     0.0058   14.3   0.0       0.01   13.4   0.0    1.4  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
  ------ inclusion threshold ------
      0.015   12.5   0.0      0.027   11.6   0.0    1.3  1  TIGR03442 TIGR03442: TIGR03442 family protein


Domain annotation for each model (and alignments):
>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.2   0.0  4.9e-145  2.3e-142       2     431 ..      34     518 ..      33     519 .. 0.92

  Alignments for each domain:
  == domain 1    score: 473.2 bits;  conditional E-value: 4.9e-145
    TIGR01134   2 gvvGvvseeeaa...eltYyaLlaLQHRGQeaaGvav...sdgeklrlkkgnGlvsdvfeeekleklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaee.e......................eskeelekavaevlervkGaYalvlm.seeklvavrDPvGvrPLvlgrkedg......yvvaSEsvAld.lgaelvrdvepgevvvlkdge.lesrlveerk..aacvfEyvYfaRpDSv.dgesvyearvemGeelaees.....pveaDvvvpvpdsgvsaalgfaeesgvpyleglvkNrYvGRtFm.PtqeeReksvrlkLnpvreevegkrvvlvDDS.VRGtTsrqv.emlReaGAkevhvr.asppvraPcvyG.dmptreellaaksteeeae..lgaDslaylslegleaave...ekeeklclacftgey 431
                  g+vGv +++++a   +++++aL++LQHRGQ+aaG+++   + g +l+lkk+nGlv++vf+++++ +l+g+ ++gHvRY+TaG s ++eaqPl+++++ g + +aHNG+l+n+++lre+l+++ r++nt+sDsevll+++a+e                         s +++++av+++++ +kG+Ya+v++ s  +++++rDP+G+rPLv+g+++++       v+aSEsvA+d lga+l rd++pge++  + ++ +++++++ ++  ++c+fEyvYfaRpDSv +g +vye+r++mGe+la++      + e Dvv+p+pd+++++al+ a  ++ py+eg++kNrY+ RtF+ P+qe+R+k+vrlkLn++++e++gk+v+lvDDS VRGtTsr++  m+R+ G k v++  a+p++r+P+vyG d+ptr+el+a+++t +e++  +g+D l y++l +le+av+    + e+++++cf+g+y
  MMETSP1174-20130828|37302_1  34 GIVGVLENSADAhvnQQIFDALTVLQHRGQDAAGMVTtssTSGARLNLKKDNGLVKEVFSQDDMLSLTGNLGIGHVRYPTAGGSCQAEAQPLYTNFPHG-ICIAHNGTLTNTAQLRESLAKDFRHINTESDSEVLLNIFAKElMtaiqlsasseskdaaggsdgtpISIQSVFAAVKASVDLCKGGYAVVMLiSGVGMLGFRDPNGIRPLVFGSRRSTetkcvqHVIASESVAIDaLGATLERDIRPGEAILFDCQGnMHTTFCQPEAklSPCIFEYVYFARPDSViEGVQVYESRLRMGERLAQKIirehpNHEIDVVIPIPDTSRTSALQCAYTLNCPYREGFIKNRYIARTFImPGQETRKKNVRLKLNTIKSEFRGKNVLLVDDSiVRGTTSREIvAMARDCGPKAVFFVsAAPEIRHPNVYGiDIPTRSELIAHNRTSDEIArnIGVDWLIYQDLADLEDAVRsinPQLEQFESSCFSGSY 518
                  6777766655444449******************975111567899***************************************************65.9********************77*****************996489*******9999999988877556889****************987525679****************5544447999999***********************9988766669999**999999**********************************987777778899***************************************88*****************************************99***********9877**************************99998889******************988556699*********9 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1   1.1e-22     5e-20       2     145 ..      34     184 ..      33     227 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 1.1e-22
    TIGR01135   2 Givgyige...reaaeilleglkrLEYRGYDSaGiAvvee...gklevvkkkGkveelkekleekelegkvgigHtRWaTHGkpteeNaHPHvde.kgeiavvhNGiieNykelreelekkgvefkSdTDtEviahlieeelkeeedllea 145
                  Givg++ +    ++++ + ++l  L  RG D aG+ ++++   ++l+++k++G v+e+ ++ +  +l+g++gigH+R+ T G  +++ a P  ++  + i++ hNG + N ++lre+l k   +++ + D+Ev+ +++++el ++ +l  +
  MMETSP1174-20130828|37302_1  34 GIVGVLENsadAHVNQQIFDALTVLQHRGQDAAGMVTTSStsgARLNLKKDNGLVKEVFSQDDMLSLTGNLGIGHVRYPTAGGSCQAEAQPLYTNfPHGICIAHNGTLTNTAQLRESLAKDFRHINTESDSEVLLNIFAKELMTAIQLSAS 184
                  99999877433567788******************9887644579**********************************************76652577*********************9999****************99977666544 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   1.5e-17   6.9e-15       2     166 ..      34     266 ..      33     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 1.5e-17
    TIGR01536   2 giagivdlkakakeeeeaikemletlahRGPDaegvwkd...........................ekeenailghrRLaiidlseg..aQPlsnek..evvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeew................................g.eelverLeGmFAfalwdekkgelflaRDrlGikPLYyaseqg......kllfaSEiKal 166
                  gi+g+++++a+a+ + ++i   l +l+hRG Da g+                              + + n ++gh+R      s +  aQPl+ +      i +nG + N+ +Lre l ++  + +t+sD+EV+L+ + +                                 + ++ v+  +G +A++++ +    ++ +RD+ Gi+PL ++s ++      + + aSE  a+
  MMETSP1174-20130828|37302_1  34 GIVGVLENSADAHVN-QQIFDALTVLQHRGQDAAGMVTTsstsgarlnlkkdnglvkevfsqddmlSLTGNLGIGHVRYPTAGGSCQaeAQPLYTNFphGICIAHNGTLTNTAQLRESLAKDFRHINTESDSEVLLNIFAKElmtaiqlsasseskdaaggsdgtpisiqsvfaAvKASVDLCKGGYAVVMLIS-GVGMLGFRDPNGIRPLVFGSRRStetkcvQHVIASESVAI 266
                  89******9998887.555555899**********98879***********************9975679*********99987755569*******9999*********************9****************9999******************************966999************999.77899***********998874311111123455555555 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.29   1.3e+02       3      41 ..      34      72 ..      33      81 .. 0.79
   2 !   16.8   0.0   7.5e-07   0.00034      40     109 ..     101     172 ..      92     180 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.29
    TIGR03104  3 GiaGelrfdgraadvaavermaaelakrGPdaeGvfaqg 41
                 Gi G l+    a   +++     +l++rG da+G+++ +
  MMETSP1174-20130828|37302_1 34 GIVGVLENSADAHVNQQIFDALTVLQHRGQDAAGMVTTS 72
                 677777776666677788889999**********98765 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 7.5e-07
    TIGR03104  40 qgkvalGhrrlkiidls.easqqPmvda.elglalvfnGaiynykelreelealGyrffsegdtevilkayh 109
                   g++++Gh r      s +a +qP++ +   g+++++nG++ n ++lre l +   +  +e+d+ev+l+ + 
  MMETSP1174-20130828|37302_1 101 TGNLGIGHVRYPTAGGScQAEAQPLYTNfPHGICIAHNGTLTNTAQLRESLAKDFRHINTESDSEVLLNIFA 172
                  68999*****998876626789***9763689********************9999999********99875 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.5e-07   0.00029     150     244 ..     336     446 ..     319     470 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.5e-07
    TIGR01251 150 ieelkkke...lknlvvvsPDkGaverakkvakklglela.iieKeRds.............kenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkviva 244
                  ++++ +++     ++v+  PD+  +  a ++a  l++++   + K+R               k+   + + +  +  gk+v++vDD i  g+T  + + +++++G k v+ +
  MMETSP1174-20130828|37302_1 336 AQKIIREHpnhEIDVVIPIPDTSRT-SALQCAYTLNCPYReGFIKNRYIartfimpgqetrkKNVRLKLNTIKSEFRGKNVLLVDDSIVRGTTSREIVAMARDCGPKAVFFV 446
                  4444444444366777778888765.5778899999988535778887678889999888644446678899999**********************************976 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.5e-06    0.0011     132     183 ..     392     443 ..     369     449 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.5e-06
    TIGR00201 132 akeRkknlenafklkvkevqgrkivlvDDvvttGatlaeiaklllklgaaev 183
                  ++ Rkkn++ ++++ ++e++g+++ lvDD +  G+t  ei  + +  g ++v
  MMETSP1174-20130828|37302_1 392 QETRKKNVRLKLNTIKSEFRGKNVLLVDDSIVRGTTSREIVAMARDCGPKAV 443
                  56899*******************************9999888777766665 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.015         7       3      42 ..      34      72 ..      33      83 .. 0.88
   2 !   11.4   0.0   4.4e-05      0.02      41     107 ..     101     170 ..      76     178 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.015
    TIGR03108  3 GiagifdlegkreidrellkrmnealahrGPdeegvhvep 42
                 Gi+g+++ +++ ++++++  +++ +l+hrG d  g+ + +
  MMETSP1174-20130828|37302_1 34 GIVGVLENSADAHVNQQIFDALT-VLQHRGQDAAGMVTTS 72
                 9****************999987.788*******998765 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.4e-05
    TIGR03108  41 epGiglghrrlsiidla..ggkqPla.nedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivha 107
                     +g+gh r      +  + +qPl+ n  + +++ +nG + n ++l++ l +   + +t+sd ev+++ 
  MMETSP1174-20130828|37302_1 101 TGNLGIGHVRYPTAGGScqAEAQPLYtNFPHGICIAHNGTLTNTAQLRESLAKDFRHINTESDSEVLLNI 170
                  5567888888877754411578**97256899**********************************9875 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.2e-05      0.01      68     119 ..     394     446 ..     334     456 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.2e-05
    TIGR01203  68 essgevkilkd.ldedikdkdvLlveDivdtgltlkellellkarkpkslkiv 119
                  + +++v++  + ++++ ++k+vLlv+D +  g+t +e++ + +  +pk +  v
  MMETSP1174-20130828|37302_1 394 TRKKNVRLKLNtIKSEFRGKNVLLVDDSIVRGTTSREIVAMARDCGPKAVFFV 446
                  456677775541677778*************************9999988666 PP

>> TIGR03442  TIGR03442: TIGR03442 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05     0.027      86     164 ..     106     180 ..      97     190 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.9e-05
    TIGR03442  86 laavRsAtvgqavelsataPFadg...rillsHnGvvdnfretlyrplrdrlddeeylaiegstDsellfallleelleqkk 164
                  ++ vR  t+g + +   ++P  ++    i + HnG++    +t   +lr++l ++ +++i+++ Dse+l  ++ +el +  +
  MMETSP1174-20130828|37302_1 106 IGHVRYPTAGGSCQA-EAQPLYTNfphGICIAHNGTLT---NTA--QLRESLAKD-FRHINTESDSEVLLNIFAKELMTAIQ 180
                  567999999998875.5677654322257889****99...343..688887766.99***************999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 1567.71
//
Query:       MMETSP1174-20130828|37315_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 244.42
//
Query:       MMETSP1174-20130828|37317_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1174-20130828|37339_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 940.42
//
Query:       MMETSP1174-20130828|37354_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-34  116.0   0.0    3.5e-34  115.9   0.0    1.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    9.9e-05   19.7   0.0    0.00013   19.3   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    0.00072   17.2   0.0     0.0011   16.6   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
     0.0031   15.1   0.1     0.0046   14.5   0.1    1.2  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   3.4e-37   3.5e-34       3     184 ..      10     193 ..       8     194 .. 0.96

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 3.4e-37
    TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGs.iiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                   ++G++ k+ v +A+d+r+ l++     +++K+fk++ k+ + ++G+ +d+ +l +llk +++ly+lr++++i  +a + ll+++l++++f p++++ +v G+++ ++p l  +D +G+ ++ +++++ G+ +   +g+ e+ Y++d++ +e  + + + + ++++RD  sG g  v +it dg
  MMETSP1174-20130828|37354_1  10 AVIGMTGKNCVAIASDTRLGLQQQTVACDFQKIFKMHSKLFMGVTGLATDVLTLQQLLKFKMNLYRLREEREIKPEAFSALLTSVLYEKRFGPYFTEPVVVGLNDkNEPFLSAMDLIGApVMTKDFVVSGTCTANLFGMCESMYRPDMEPDELFETISQCLLASVDRDCLSGWGAVVHIITADG 193
                  689*************************************************************************************************9998758899********9345566********************************************************998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   0.00013      29     197 ..       8     175 ..       6     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.3e-07
    TIGR03633  29 gttavGiktkegvvlivdkrit.sklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleyk.avaiGagrekvlellekeykedlsldeaielalkalakale 197
                  g + +G+  k+ v +++d r   ++   a + +kifk+ +++ +  +Gl++D  +l +  + +   +rl+ + +i+ e+++  ++ +   y +  G  P+ +  ++ G++dk e+ l   d  Ga +  k  v+ G+   ++  + e+ y+ d++ de  e   + l ++++
  MMETSP1174-20130828|37354_1   8 GGAVIGMTGKNCVAIASDTRLGlQQQTVACDFQKIFKMHSKLFMGVTGLATDVLTLQQLLKFKMNLYRLREEREIKPEAFSALLTSVL--YEKRFG--PYFTEPVVVGLNDKnEPFLSAMDLIGAPVMTKdFVVSGTCTANLFGMCESMYRPDMEPDELFETISQCLLASVD 175
                  6788****************85255566779*************************************************99999875..555544..9999999999988758889999****98877725666999999**************99988766666665555 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-06    0.0011       5     185 ..       8     184 ..       5     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1e-06
    TIGR03690   5 gttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGGpd 185
                  g +++ ++ k+ v +a d r    +     d +k+fk      +g++G a+  + l +l + +++ y   e +++  e+ +  l++++ +   + +      p++vG +  +++  + + d +g+    +++   G+ +    g    +y++d++ ++  +   ++l  + d d  +G   
  MMETSP1174-20130828|37354_1   8 GGAVIGMTGKNCVAIASDTRLGLQQQTVACDFQKIFKMHSKLFMGVTGLATDVLTLQQLLKFKMNLYRLREEREIKPEAFSALLTSVLYE---KRFGPYFTEPVVVGLND-KNEPFLSAMDLIGAPVMTKDFVVSGTCTANLFGMCESMYRPDMEPDELFETISQCLLASVDRDCLSGWGA 184
                  6788999999**********9999999999*****************************************9998777766666655543...345557788*****975.56678999*************9999999999999***************9999***99999999887554 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.5e-06    0.0046       3      68 ..      11      75 ..       9      82 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.5e-06
    TIGR03692  3 ilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeyk 68
                 ++ +  ++ v+ia+d ++ l+++ +  + +k+ ++ + k+ +G  G ++d ltL++ ++ k++ y+
  MMETSP1174-20130828|37354_1 11 VIGMTGKNCVAIASDTRLGLQQQTVACDFQKIFKM-HSKLFMGVTGLATDVLTLQQLLKFKMNLYR 75
                 667778899************************98.56899***************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1035.61
//
Query:       MMETSP1174-20130828|37359_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 592.55
//
Query:       MMETSP1174-20130828|37375_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-127  421.3   0.0     1e-126  421.1   0.0    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.1   0.0  2.5e-130    1e-126       2     388 ..      88     473 ..      87     476 .] 0.95

  Alignments for each domain:
  == domain 1    score: 421.1 bits;  conditional E-value: 2.5e-130
    TIGR01064   2 rtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk.eevklkkgekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedkvivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevleekgakdvkiiaKiEnqegvkn..ideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknsk..akkssieeavalaaveaaekakakaivvltesgrtar 388
                  +tk++aT+GPa++++e+++kl  aG +v RlNfSHgs e h+  ++++r+++ kl++p+++llD++Gp++Rvg++ + ++  l+kg+k+ ++++     g+e++v+++ ++++k + +G+++lv+DG i+l  ve   d +i+ev++gg ++++kgvn+p++ + +pal+e Dk++  +g+e +vd++a+SFv++ ed+ e+r+++ +     v iiaK+E++++v+   +++I++a+d+ mvARGDLGve p e vp+lQ+k+i +cr++gkpv++ATqmL+Sm +n +PTRAE+sDva Av+ GtdavMLS+E+a+G+YP+++V++m++i++++e   +++++++ +k+ +  +     e a++ aa ++a +++a aivv+t++g +a 
  MMETSP1174-20130828|37375_1  88 KTKVIATLGPASSTAEMIEKLALAGADVFRLNFSHGSKEGHAANLKIIRDLEIKLNRPIGVLLDLQGPKLRVGQFGGaGKFMLEKGQKFRFDMSP--DLGDENRVQLNHPEIMKAMAPGKRLLVNDGNIALIAVECGPDFIITEVEVGGVISDRKGVNVPDVVLPIPALTEADKRNALVGLELKVDWMALSFVQRPEDIYELRDIVGRD----VAIIAKLEKPSAVSDlyLNAIVEAADACMVARGDLGVECPPESVPILQRKIITECRQQGKPVVVATQMLESMVTNAVPTRAEASDVATAVYLGTDAVMLSAESAAGEYPIQSVAMMRSIINSVECDPRYYSSSSAHKMLDdeYGDILPERAMTIAARQIARSVDAVAIVVYTRNGLSAL 473
                  7***************************************************************************9899************877..789*********************************************************************************************************9866....89************9888***********************************************************************************************************99987777666554400445556899***********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 1396.15
//
Query:       MMETSP1174-20130828|37384_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|37394_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|37422_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 970.76
//
Query:       MMETSP1174-20130828|37455_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1174-20130828|37481_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|37489_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 367.68
//
Query:       MMETSP1174-20130828|37503_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 963.16
//
Query:       MMETSP1174-20130828|37509_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|37520_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|37630_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 248.89
//
Query:       MMETSP1174-20130828|37634_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.7   1.4      0.017   12.9   1.0    1.4  1  TIGR02209 ftsL_broad: cell division protein FtsL
  ------ inclusion threshold ------
      0.033   11.4   0.1       0.05   10.8   0.1    1.4  1  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.0   8.4e-06     0.017       4      59 ..      31      86 ..      28      89 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.4e-06
    TIGR02209  4 lyvlllllvlvsaisvvsvqhqtrqlnselqklqaeieklqkewndLqlEvaelsr 59
                 ++vll+++ + + +++  +q q+   ++el++ q +++kl ++ + +++Ev  l +
  MMETSP1174-20130828|37634_1 31 IFVLLVIITFGVLFGLSRQQGQLAANQNELTQSQDSNQKLYEQAEVAEQEVFNLQT 86
                 789***********************************************988876 PP

>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.4e-05      0.05      39     110 ..      11      81 ..       2     152 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.4e-05
    TIGR03943  39 keeeaehhhehktklkrrlvylllllpillgllvppaalgsdtaaqrglafsslkqdrkepqaslpalkpie 110
                  ++++++++++  ++l+ ++ +++ll+ i +g+l+  +  ++++aa+++  + + ++++++ +++++  +++ 
  MMETSP1174-20130828|37634_1  11 SSKNDKANASLSQRLNYSRAIFVLLVIITFGVLFGLSRQQGQLAANQNELT-QSQDSNQKLYEQAEVAEQEV 81 
                  3333378889999999999999************99999999998873333.23333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 788.05
//
Query:       MMETSP1174-20130828|37642_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2276.81
//
Query:       MMETSP1174-20130828|37682_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   18.5   0.0      0.026   11.9   0.0    2.1  2  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   6.4e-06     0.026       8      93 ..      15      94 ..       8     105 .. 0.82
   2 !    4.7   0.0    0.0011       4.3     142     174 ..     154     186 ..     125     220 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.4e-06
    TIGR01262  8 SsasyRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarv 93
                 ++a+ +vR+aL + g+++  v + +        ++ k++   +++P+++  +g+ + qS A++++    + +++L p+d ++r   
  MMETSP1174-20130828|37682_1 15 AGAAEKVRLALVVSGVSFDDVRISFPD-----WPARKSTAKYGQLPIMTLPDGKEIYQSDAMLHWAA-CQGDSSLYPQDINARLLI 94
                 57899***************9999988.....466666667789999999999************76.566799*****9999765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0011
    TIGR01262 142 lEellkekagafcvGdevtladvcLvpqvynAe 174
                  l + ++e   +f  G+++t+ad++  p +    
  MMETSP1174-20130828|37682_1 154 LQSFIEEGGNSFLCGATLTIADLTALPLISYYS 186
                  55556666778************9999875444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1095.02
//
Query:       MMETSP1174-20130828|37683_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1174-20130828|37692_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|37758_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-201  666.0   0.8     9e-201  665.7   0.6    1.0  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.3e-73  246.1   0.3    1.9e-73  245.5   0.2    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.5e-70  234.7   0.1    6.6e-70  234.1   0.0    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.2e-40  137.5   0.0    1.8e-40  137.0   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    1.2e-06   25.1   0.1    1.9e-06   24.4   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
    1.7e-06   24.7   0.4    4.9e-06   23.2   0.0    1.8  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.6e-05   21.1   2.9      0.001   15.9   0.0    2.7  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    7.3e-05   19.7   0.0    0.00013   19.0   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00047   17.1   0.0     0.0011   15.9   0.0    1.7  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00062   16.7   0.0     0.0021   15.0   0.0    1.9  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0082   12.6   0.4      0.022   11.2   0.3    1.7  1  TIGR00368 TIGR00368: Mg chelatase-like protein
  ------ inclusion threshold ------
      0.024   10.7   0.0        1.5    4.8   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  665.7   0.6  2.6e-203    9e-201      37     491 ..       2     454 ..       1     458 [. 0.97

  Alignments for each domain:
  == domain 1    score: 665.7 bits;  conditional E-value: 2.6e-203
    TIGR01241  37 slgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.eevdlk.kvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPeedklllskkellakiavllgGrvaeeiifgevttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeel 491
                  ++gkskak++++e+v+vtfkdvaG++eak+e++e+v+fLk+++kft+lGakiPkG+ll+GpPGtGktLlaka+aGea+vpffsisGsdf+emfvGvG srvrDlf++a+ naPci+fiDeiDavG++rg+g ++ggndere+tLnqlLvemDGf+++++v+vla+tnr+d LD aLlrPGrfDrq++vdkPd+kgr+ei++vh++ ++l+ +  + + ++a  tpGf+Gad+anl+neaa++aar+ k+++++ ++e a drvi Gle  +++is++e+k+va+heaGha++g+++++ad++ kvti+prG  alG++++lP+e   l ++++++++i ++l+Gr+aeei+fg+vttGas+Dl+++t+i+ +m+  +G+ +++g++a+ + e     g ++ +++ ys++ta+++Dee k++++eayk++ ++l+ekk+++  +a++Lleketi+++++
  MMETSP1174-20130828|37758_1   2 QIGKSKAKKITKEDVNVTFKDVAGVQEAKREIMEFVEFLKDSTKFTQLGAKIPKGALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIEMFVGVGPSRVRDLFKEARANAPCIVFIDEIDAVGKQRGRGgFSGGNDERENTLNQLLVEMDGFSESTNVVVLAGTNRADTLDAALLRPGRFDRQIQVDKPDIKGRKEIFEVHLRPLTLSgPAEEYSgRLAGLTPGFAGADIANLCNEAAIVAARRSKTSIDMADFESAADRVIGGLET-NKIISPEERKTVAFHEAGHAVAGWFLEHADPLLKVTIVPRGGgALGFAQYLPKE-VALRTEEQINDMICMALAGRAAEEIHFGKVTTGASDDLRRVTQIVYQMIQVYGFNKRIGQLAFPQGE----GGGGFPEQRPYSDATAQAMDEEAKKLVDEAYKRTLALLTEKKDQVRDVAEMLLEKETINHDDI 454
                  58********************************************************************************************************************************99*****************************************************************************9533333359***********************************************986.6899************************************999*********99.999************************************************************9665....67778899***************************************************9998 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.5   0.2   5.6e-76   1.9e-73     114     363 ..      13     264 ..       6     265 .. 0.95

  Alignments for each domain:
  == domain 1    score: 245.5 bits;  conditional E-value: 5.6e-76
    TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldss.tsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvd..leelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                  +e  +v+++d+ G+++  rei e ve+ lk+   f ++G + pkG ll GppGtGktllaka a e+   f  + gs++++ ++G G + vr++fk a+  ap+i+fideida++ +r     ++G+ e + tl qll e+dGf    nv v+a tnr d ld allrpGrfdr i+v  pd++Gr ei+++h r + l++  +     la lt G++Gad+  ++ ea + a r++++ + m+df  a ++v
  MMETSP1174-20130828|37758_1  13 KEDVNVTFKDVAGVQEAKREIMEFVEF-LKDSTKFTQLGAKIPKGALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIEMFVGVGPSRVRDLFKEARANAPCIVFIDEIDAVGKQRGRGGfSGGNDERENTLNQLLVEMDGFSESTNVVVLAGTNRADTLDAALLRPGRFDRQIQVDKPDIKGRKEIFEVHLRPLTLSGPAEeySGRLAGLTPGFAGADIANLCNEAAIVAARRSKTSIDMADFESAADRV 264
                  57889*********************7.9*****************************************************************************************987625678999*********************************************************************9766521468*****************************************998 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.0   1.9e-72   6.6e-70     439     693 ..       7     265 ..       2     345 .. 0.91

  Alignments for each domain:
  == domain 1    score: 234.1 bits;  conditional E-value: 1.9e-72
    TIGR01243 439 alrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl...seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvd..leelakktegytgadieavvreaalaalresvksvakekleaeekeil 693
                    +++  e  nv ++d+ g++e+k+e+ e ve+ lk    f +lg + pkg ll gppgtgktllaka a e+   f ++ g + +  +vg    ++r++f+ ar  ap+i+f+deida+  +rg+     ++   ++ +nqll e+dg+ e+++vvv+a tnr d ld allrpgr+dr i v  pd + r+eif +h r l+l+   +    +la  t g++gadi+ ++ eaa+ a r+s  s+    +e+  + ++
  MMETSP1174-20130828|37758_1   7 KAKKITKEDVNVTFKDVAGVQEAKREIMEFVEF-LKDSTKFTQLGAKIPKGALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIEMFVGVGPSRVRDLFKEARANAPCIVFIDEIDAVGKQRGRGGfsgGNDERENTLNQLLVEMDGFSESTNVVVLAGTNRADTLDAALLRPGRFDRQIQVDKPDIKGRKEIFEVHLRPLTLSGPAEeySGRLAGLTPGFAGADIANLCNEAAIVAARRSKTSIDMADFESAADRVI 265
                  5677788889**********************8.999***************************************************************************************986411144566789******************************************************************8766522468****************************99999888888777664 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   5.2e-43   1.8e-40     165     380 ..       5     207 ..       1     241 [. 0.88

  Alignments for each domain:
  == domain 1    score: 137.0 bits;  conditional E-value: 5.2e-43
    TIGR03689 165 kseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvss...dvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                  ks+ +++  +e  +vt++d+ G+++   +i + ve+ ++    +++ + k PkG ll GPPG+Gktl+aka a           ea+  f++i G ++++ +vG    ++r +f+ ar +a    P +vf+de+d++ + rG G  s   d     + qll e+dG  +  nv+v+  +nr d +d a+lrPGr+d +i++++Pd ++ ++i++ +l +
  MMETSP1174-20130828|37758_1   5 KSKAKKIT-KEDVNVTFKDVAGVQEAKREIMEFVEF-LKDSTKFTQLGAKIPKGALLCGPPGTGKTLLAKATAG----------EASVPFFSISGSDFIEMFVGVGPSRVRDLFKEARANA----PCIVFIDEIDAVGKQRGRGGFSggnDERENTLNQLLVEMDGFSESTNVVVLAGTNRADTLDAALLRPGRFDRQIQVDKPDIKGRKEIFEVHLRP 207
                  55555554.45558********************96.455678****************************884..........3456799**************************9876....*************99998754434366666789*********************************************************9974 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.7e-09   1.9e-06     326     434 ..      21     127 ..       5     138 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.7e-09
    TIGR00763 326 edHyglkkvKeRilEylavkklrkk...lkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgs 434
                  +d  g+++ K  i+E++   k   k   l +ki     l GPPG GKt lak+ A      f+ +s  G +D  e+      +vG  P ++ + +k+++ + P ++++DEiD +g+
  MMETSP1174-20130828|37758_1  21 KDVAGVQEAKREIMEFVEFLKDSTKftqLGAKIpkgALLCGPPGTGKTLLAKATAGEASVPFFSIS--G-SDFIEM------FVGVGPSRVRDLFKEARANAPcIVFIDEIDAVGK 127
                  67789999******99988754333111334443334677****************99****9877..4.577775......9********************44679****9985 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.4e-08   4.9e-06     277     431 ..      22     176 ..       6     193 .. 0.73
   2 ?   -1.8   0.0      0.54   1.9e+02     175     212 ..     411     451 ..     395     454 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.4e-08
    TIGR03922 277 kqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek.rdg...akddfGleaidtLLarlEndRd.rlvviiAGYe..kdlDkl 431
                   + G++++k+++  + + ++     ++ G ++++     ll GPPGtGkt +A++ a    G + +       +s +d+i  ++g    +  +l  +a      ++F+DE+ a+ ++ + g    ++d   + +++LL+ ++   +   vv+ AG +  + lD+ 
  MMETSP1174-20130828|37758_1  22 DVAGVQEAKREIMEFVEFLKDSTKFTQLGAKIPK---GALLCGPPGTGKTLLAKATA----GEASV---PFFSISGSDFIEMFVGVGPSRVRDLFKEARANapcIVFIDEIDAVGKQrGRGgfsGGNDERENTLNQLLVEMDGFSEsTNVVVLAGTNraDTLDAA 176
                  5678999999998888888888888888988875...569**********9887765....54443...4678999*******************9997643339********98873222122356667789********986541557777885411345544 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.54
    TIGR03922 175 gpaavavvdlayakalvlRalgee...deAqelLeklyand 212
                   + a ++vd ay ++l+l ++ ++   d A++lLek ++n+
  MMETSP1174-20130828|37758_1 411 DEEAKKLVDEAYKRTLALLTEKKDqvrDVAEMLLEKETINH 451
                  33334488888888877654444322267888888887776 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     3e-06     0.001      15     103 ..      24     108 ..      11     111 .. 0.75
   2 !    5.4   0.0    0.0047       1.6     244     285 ..     110     154 ..     107     167 .. 0.70
   3 ?   -2.8   0.7       1.4   4.8e+02     202     240 ..     415     452 ..     404     455 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3e-06
    TIGR00390  15 iGqdeakkavaialrnryrrlqleeelkdevvPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                   G +eak+ +   +++  + +    +l    +Pk  l+ G+ G Gkt +a+  a  a +Pf  +  + f e+ +vG    s vrdl + 
  MMETSP1174-20130828|37758_1  24 AGVQEAKREIM-EFVEFLKDSTKFTQLGAK-IPKGALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIEM-FVGVG-PSRVRDLFKE 108
                  55666666553.344444444444444443.6***************************************7.89965.6889999876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0047
    TIGR00390 244 rveesGiifideidkiakkg...essgadvsreGvqrdllPiveG 285
                  r++   i+fideid + k+      sg +  re     ll  ++G
  MMETSP1174-20130828|37758_1 110 RANAPCIVFIDEIDAVGKQRgrgGFSGGNDERENTLNQLLVEMDG 154
                  567778**********99752224566666677666666655555 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.4
    TIGR00390 202 qnllsdkkkkrklkvkeakkvlieeeaeklvdseeikqe 240
                  ++l  d+  kr+l +   kk  + + ae l+++e i+++
  MMETSP1174-20130828|37758_1 415 KKL-VDEAYKRTLALLTEKKDQVRDVAEMLLEKETINHD 452
                  333.36667777877777777778888888888877765 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.7e-07   0.00013     120     197 ..      57     128 ..       2     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.7e-07
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                   ll Gp G+Gktlla++ a e  vpf     + + e  +vG      +  l+++a  +       i++ideid + ++
  MMETSP1174-20130828|37758_1  57 ALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIEM-FVGVGPSR-VRDLFKEARANA----PCIVFIDEIDAVGKQ 128
                  5899*********************976666777775.78876554.577888877664....68********99886 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06    0.0011      31      95 ..      55     127 ..      19     130 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
    TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailta..leegdvlfiDeihrlsk 95 
                     ll GPPG Gkt lak  a e  v    +sg  +        p+ +  ++ +   ++  ++fiDei ++ k
  MMETSP1174-20130828|37758_1  55 KGALLCGPPGTGKTLLAKATAGEASVPFFSISGSDFiemfvgVGPSRVRDLFKEarANAPCIVFIDEIDAVGK 127
                  5679*********************999888887652222221244444444431134556888888877765 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.1e-06    0.0021       5     153 ..      20     169 ..      16     204 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.1e-06
    TIGR02881   5 leklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...Gvlfideaysla....rG...GekdfGkeaidtlvkemedkre.elvlilaGysd 153
                  ++ + G++e k+ i e   + +  +k ++ g k  k +l   + G PGtGkt +a+  a    e +v     +  +  +d++  ++G    ++r++ k+a      ++fide  ++     rG   G  d   +++++l+ em+  +e   v++laG ++
  MMETSP1174-20130828|37758_1  20 FKDVAGVQEAKREIMEFVEFLKDSTKFTQLGAKIPKGAL---LCGPPGTGKTLLAKATAG---EASV----PFFSISGSDFIEMFVGVGPSRVRDLFKEARAnapCIVFIDEIDAVGkqrgRGgfsGGNDERENTLNQLLVEMDGFSEsTNVVVLAGTNR 169
                  678899***********9999999999999999999886...78********99998764...4444....5778899999999*************9987523379*****877642222443334567777788888888887654156888998654 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   6.3e-05     0.022     189     232 ..      18      75 ..       2      81 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.3e-05
    TIGR00368 189 ldlkdvkGqqrakral...........eiaaaGg...hnllllGPPGsGktllakrlq 232
                    +kdv G q+akr +           + +  G       ll GPPG+Gktllak   
  MMETSP1174-20130828|37758_1  18 VTFKDVAGVQEAKREImefveflkdstKFTQLGAkipKGALLCGPPGTGKTLLAKATA 75 
                  55666666666666542222222211112223321114579*************9865 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0042       1.5     486     525 ..      54      92 ..      25      98 .. 0.81
   2 ?    3.5   0.0      0.01       3.6     264     311 ..     100     150 ..      94     205 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0042
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                  P g+ l  Gp G Gkt lak+ a e +v +  +  s++ e
  MMETSP1174-20130828|37758_1  54 PKGA-LLCGPPGTGKTLLAKATAGEASVPFFSISGSDFIE 92 
                  5555.568********************999988888877 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.01
    TIGR02639 264 erlkevveeiekeedailfiDeihti...vgagatsggsldasnlLkPala 311
                   r++++ +e +++   i+fiDei ++    g g  sgg+ +  n L   l 
  MMETSP1174-20130828|37758_1 100 SRVRDLFKEARANAPCIVFIDEIDAVgkqRGRGGFSGGNDERENTLNQLLV 150
                  689999999999999********9983334678888888888888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.20s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 1443.27
//
Query:       MMETSP1174-20130828|37765_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.9   0.1      0.029   11.6   0.0    1.1  1  TIGR00291 RNA_SBDS: rRNA metabolism protein, SBDS family


Domain annotation for each model (and alignments):
>> TIGR00291  RNA_SBDS: rRNA metabolism protein, SBDS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-06     0.029      12      61 ..      16      65 ..       8      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-06
    TIGR00291 12 lkkagerFevlvdpdlaadlregkevdldevLaieevFrdaskGekasee 61
                 ++ka ++ +   + +l + + +g++v  d+ La++ + + a++G+k +++
  MMETSP1174-20130828|37765_1 16 YTKAANKGDAGAEFYLREMYMNGQDVTKDDRLAVKLIRKAAKQGDKCAQD 65
                 6777777777888899999**************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1174-20130828|37778_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 229.04
//
Query:       MMETSP1174-20130828|37816_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1174-20130828|37833_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 1230.48
//
Query:       MMETSP1174-20130828|37839_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-177  587.9   0.0   1.5e-177  587.7   0.0    1.0  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    2.3e-29  100.2   0.0    3.2e-28   96.5   0.0    2.0  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
      1e-26   91.6   0.0    2.7e-26   90.2   0.0    1.6  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.3e-19   67.6   0.0    6.8e-16   56.1   0.0    2.2  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    7.2e-19   65.6   0.1    1.2e-16   58.3   0.1    2.8  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0001   19.1   0.0    0.00017   18.4   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0023   14.9   0.0     0.0075   13.2   0.0    1.7  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0025   14.6   0.0     0.0036   14.1   0.0    1.1  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
  ------ inclusion threshold ------
       0.03   11.8   0.0      0.047   11.2   0.0    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase


Domain annotation for each model (and alignments):
>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.7   0.0  3.3e-180  1.5e-177       1     340 [.      38     380 ..      38     382 .. 0.98

  Alignments for each domain:
  == domain 1    score: 587.7 bits;  conditional E-value: 3.3e-180
    TIGR01472   1 kvalitGitGqdGsylaelllekgyevhGlirrsssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkpddyviatgettsvrefvevsfelvgitlewkdk..gikevglikev.gkvvveidkryfrptevdlllGdatkakeklgwkrevslkelvkemveedlk 340
                  kvalitGitGqdGsylae+ll+kgyevhG+irrsssfnt r+eh+y+++h+e+ +lflhyGdltds++l+++++++ p+eiynl+a shvkvsfe++eyta++dg+Gtlrll+a+r ++l+kk r yqastselyG+v+eipqke+tpf+prspy++ak yay++++nyreayg++ +nGilfnhesprrG tfvtrkitrava+i+ gl+++lylGnld++rdwG+a+dyve m+lm+q+d+pdd+v+atge++svrefv+ +f ++gi+++w ++  +++e+g+ ke   kv v++d++yfrptevdll Gdatkakeklgw +++++ elv emv ed+ 
  MMETSP1174-20130828|37839_1  38 KVALITGITGQDGSYLAEFLLDKGYEVHGIIRRSSSFNTYRIEHIYRDRHAENVRLFLHYGDLTDSTNLVQIVSDVMPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVGLEKKCRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYAYWMIINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARISRGLQDCLYLGNLDSQRDWGHARDYVEGMYLMVQRDEPDDFVLATGECHSVREFVDAAFLHLGIEISWLGEkgSVEETGVRKEDpSKVLVRVDPQYFRPTEVDLLVGDATKAKEKLGWVPKIKFAELVAEMVTEDVA 380
                  79********************************************************************************************************************************************************************************************************************************************************************************875225899999876438*************************************************96 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0     7e-31   3.2e-28       2     296 ..      41     365 ..      40     366 .. 0.79

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 7e-31
    TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlyns.fnswGwldevekevkkeievv..lGdirdaesvkkavkgv..dvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevek...vvhtstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPti...itqilsg.kkkiklGslsPtrdfnyvkdtvegfiavaesdk............avGevinigs...nfeisigdtvkl.....iaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                  l+tG  G  Gs+l+e l++kG+ev+ +++  s fn++   +  ++   +++ ++   Gd+ d++ + ++v++v  d ++ l a+  +  s++ +e   e++  Gtl +l+a r +++ek   + ++stse+yG  q +P +e+ p  ++sPy  +k  a  + + + +++ + ++    fn   Pr+    v   i   +++i  g ++ + lG+l   rd+ + +d veg++ +++ d+            +v e ++++    + eis            +++   ++v + +d + +rP+  ev+ l++d++k+ke +gw pk+
  MMETSP1174-20130828|37839_1  41 LITGITGQDGSYLAEFLLDKGYEVHGIIRRSSsFNTYRIEHIYRDRHAENVRLFlhYGDLTDSTNLVQIVSDVmpDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVGLEKkcrLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYAYWMIINYREAYGMHLTNGILFNHESPRRGPTFVTRKItraVARISRGlQDCLYLGNLDSQRDWGHARDYVEGMYLMVQRDEpddfvlatgechSVREFVDAAFlhlGIEISWLGEKGSveetgVRKEDPSKVLVRVDPQYFRPT--EVDLLVGDATKAKEKLGWVPKI 365
                  89************************9987651666655555556677788876336**************987789**************************************9985333889*************************************************************99888866661114555555234578********************99888775333333111111333445544222267888533332201112455556788999999999995..8999999999999999999985 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0     6e-29   2.7e-26       3     308 ..      41     375 ..      39     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 6e-29
    TIGR01181   3 LvtGGaGfiGsnfvryileetpdaevvvlDkL...tyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrke..lkevrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayartyglpvlit....rcsnnyGpyqfpekliPllitnalagkklpvy.GdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldk....................dedlieyved...rpGhDrryaldaskikreLgwkpkvtfeeglrktv 308
                  L+tG +G  Gs + +++l++  +++ +        ty  ++      +++ r+ +  gd++d+ ++ ++++++ +d + n+ a shv  s + +e   e++ vGt +ll+a+r+    k+ rl + st e yG++++     +ettp+ P+sPy  +k  +  ++  y ++yg++ +      + s   Gp  f+ + i + + ++ +g +  +y G+    rDw +++D +++++l++++ +  + + ++++e +++ e v+    +l+                      ++ +  v+    rp +      da+k k++Lgw pk++f e +++ v
  MMETSP1174-20130828|37839_1  41 LITGITGQDGSYLAEFLLDKGYEVHGIIRRSSsfnTYRIEHIYRDRHAENVRLFLHYGDLTDSTNLVQIVSDVMPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVglEKKCRLYQASTSELYGKVQEIP--QKETTPFYPRSPYGVAKQYAYWMIINYREAYGMHLTNGilfnHESPRRGP-TFVTRKITRAVARISRGLQDCLYlGNLDSQRDWGHARDYVEGMYLMVQRDEPDD-FVLATGECHSVREFVDAAFLHLGIeiswlgekgsveetgvrkedPSKVLVRVDPqyfRPTEVDLLVGDATKAKEKLGWVPKIKFAELVAEMV 375
                  677777777777777777776655533333320113433344444556778889999********************************************************96224699**************9994..59*******************************98755001144555566.5888999*************999899999******************9998766.66777777889999999988888778899999999999998876333333333233377777777779999999999999999998887765 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.5e-18   6.8e-16       5     174 ..      38     212 ..      35     282 .. 0.81
   2 !    9.4   0.0   0.00025      0.11     292     327 ..     340     375 ..     316     387 .. 0.85

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.5e-18
    TIGR02622   5 kkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkd.....ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavrale..svkavvlvtsDkvYenkewvwgyretdalGGhDpYsaskaaaelvvasyrksflk 174
                  k  l+tG tG  Gs+l+ +L + G ev+G+    + + n++ + ++ ++ ++       ++gd++d ++l +++++v P+ ++ l a + v+ s++    t e + +Gt++ll+a+r++   +++ +    +   Y   +     +et ++    pY  +k  a  ++  yr+++  
  MMETSP1174-20130828|37839_1  38 KVALITGITGQDGSYLAEFLLDKGYEVHGIIRRSS-SFNTYRIEHIYRDRHAenvrlFLHYGDLTDSTNLVQIVSDVMPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVGleKKCRLYQASTSELYGKVQE-IPQKETTPFYPRSPYGVAKQYAYWMIINYREAYGM 212
                  5569*************************965544.3444444333333322223336789********************************************************986114555667788888987654.5669****************99999999*999965 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00025
    TIGR02622 292 eapheaklLkLdsdkakkklgwkprlsleeaveatv 327
                   +p e +lL  d++kak+klgw p++++ e v  +v
  MMETSP1174-20130828|37839_1 340 FRPTEVDLLVGDATKAKEKLGWVPKIKFAELVAEMV 375
                  4789************************99988766 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   2.7e-19   1.2e-16       3     312 ..      41     366 ..      39     378 .. 0.72

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 2.7e-19
    TIGR01179   3 LvtGgaGyiGshvvrqllekgkevvvlDnlskgs....kealkalekit..evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkk...liFsssaavYgesekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHve......DlaeaHlaalealeeg...gesevynlGa.....gqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyd 312
                  L+tG +G  Gs  +  ll+kg+ev  +   s+++     e++ + ++ +  ++ l  gdl+d+++l +++++  +d +  ++a+ +v+ s +      e + v+tl+Ll+a++++g++k   l  +s++ +Yg+ +++p +E++p  p +pYG +k  + +++ ++++a ++++++    Fn     e+ + G +   + ++ + va++  g ++ l + G+    +D    RDy+  +      D  +  + a    ++     +++ + lG      g+  sv e   + +  s + ++v  +  R+ ++  lv+da k+k++lgw pk +
  MMETSP1174-20130828|37839_1  41 LITGITGQDGSYLAEFLLDKGYEVHGIIRRSSSFntyrIEHIYRDRHAEnvRLFLHYGDLTDSTNLVQIVSDVMPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVGLEKkcrLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYAYWMIINYREA-YGMHLTNGILFNH----ESPRRGPTF-VTRKITRAVARISRGLQDCLYL-GNLDSQRDWGHARDYVEGMylmvqrDEPDDFVLATGECHSVrefVDAAFLHLGIeiswlGEKGSVEETGVRKEDPSKVLVRVDPQYFRPTEVDLLVGDATKAKEKLGWVPKIK 366
                  9**********************8543333333311114556666665555667778**********************************98777778899*************98753337889******************************************9.9999988888985....444545433.2336778888888888888765.55445567777788876441111123344555554433333111456666666422222555677777666666676666666677788888888888888888888887766 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.7e-07   0.00017       2     144 ..      39     198 ..      38     211 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.7e-07
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrn..leel....dvEiv.....eGdlkdeaslkkalkGc..ealfHvAAdyrlwak..dpeelykanvegtravleaAleagverv..vytssvatlgvkedgkeadettpsklekmiGhYkrs 144
                   +l+tG tG  Gs +++ ll++G+ev+ + r++s+ +   +e++    ++E v      Gdl+d++ l + ++ +  + ++ + A  ++ +    +e   +a+  gt ++l+a ++ g+e+   +y +s + l  k +  + +ettp   ++  G  k+ 
  MMETSP1174-20130828|37839_1  39 VALITGITGQDGSYLAEFLLDKGYEVHGIIRRSSSFNTyrIEHIyrdrHAENVrlflhYGDLTDSTNLVQIVSDVmpDEIYNLGAMSHVKVSfeMSEYTAEADGVGTLRLLNAIRSVGLEKKcrLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQY 198
                  589**************************999986443113333222245544222227*************9995568999998766665510555566677778999*********998533799999999999999999999999988888877765 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05    0.0075       3     131 ..      41     199 ..      39     233 .. 0.83
   2 ?   -1.6   0.0      0.54   2.5e+02     148     189 ..     310     348 ..     291     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
    TIGR01214   3 litGakgqlgreLveqlskegsevva.ltrs.........................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvg....allvhiSTDYvFDGekkrpYreedetnPlnvYgqsKlaG 131
                  litG +gq g+ L+e l  +g ev   ++rs                           dl+d  +l +++ ++ Pd + n +A+ +V  + +  e   +    +t +l +a   vg     +l   ST  ++   ++ p +e+ +  P + Yg +K+  
  MMETSP1174-20130828|37839_1  41 LITGITGQDGSYLAEFLLDKGYEVHGiIRRSssfntyriehiyrdrhaenvrlflhYGDLTDSTNLVQIVSDVMPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSVGlekkCRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYA 199
                  7999***********9999666665505555899*****************9999889*****************************988777777777888888887777776652222578888999999888888999999999999999998765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.54
    TIGR01214 148 swlygasggrnFvktmlrlakereelkvvadQigsPTyakdl 189
                  swl ++++     +t +r+   ++ l  v+ Q+  PT +++l
  MMETSP1174-20130828|37839_1 310 SWLGEKGS---VEETGVRKEDPSKVLVRVDPQYFRPTEVDLL 348
                  55544443...45677788888888888999*****999887 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     8e-06    0.0036       5      89 ..      38     129 ..      35     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8e-06
    TIGR03589   5 ksilitGgtGsfGkkfikkllek.ykvkkiiiysrdelkqfelqqkfee...dklrffi..Gdvrdkerleraledv..dlvvhaaalkqvpa 89 
                  k  litG tG  G    + ll+k y+v+ ii  s   +  +++++ + +   +++r f+  Gd+ d + l + ++dv  d +    a+ +v +
  MMETSP1174-20130828|37839_1  38 KVALITGITGQDGSYLAEFLLDKgYEVHGIIRRS-SSFNTYRIEHIYRDrhaENVRLFLhyGDLTDSTNLVQIVSDVmpDEIYNLGAMSHVKV 129
                  5679*****************9846888877655.56788888887754455999999777***************97788888888888765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001     0.047       1      74 [.      38     115 ..      38     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0001
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap....neerakewlqekevegfdvavvkadvssfeeakaavakvea 74 
                  +val+tG +g  G+ +++ l ++Gy+v   ++     n+ r +++ +++++e+  + +  +d++++ +  + v++v  
  MMETSP1174-20130828|37839_1  38 KVALITGITGQDGSYLAEFLLDKGYEVHGIIRRsssfNTYRIEHIYRDRHAENVRLFLHYGDLTDSTNLVQIVSDVMP 115
                  79***********************9865443212268889999999******************9999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 1351.15
//
Query:       MMETSP1174-20130828|37913_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-131  436.4   1.4    9.4e-81  269.5   0.0    2.4  2  TIGR00469 pheS_mito: phenylalanine--tRNA ligase
    1.1e-52  177.1   3.8    4.8e-30  102.7   0.0    3.1  2  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
    1.1e-17   61.4   0.0    1.5e-17   61.0   0.0    1.2  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit
    0.00035   17.0   0.0    0.00047   16.5   0.0    1.1  1  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase


Domain annotation for each model (and alignments):
>> TIGR00469  pheS_mito: phenylalanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.1   1.4e-52   1.4e-49      17     172 ..      13     159 ..       7     180 .. 0.89
   2 !  269.5   0.0   9.2e-84   9.4e-81     213     450 ..     163     376 ..     148     377 .. 0.91

  Alignments for each domain:
  == domain 1    score: 166.8 bits;  conditional E-value: 1.4e-52
    TIGR00469  17 tdgqttnvtdkilklvdaskhlkedhplsilrdliekklysvdrlfkvfdnlkpvvtvqenfdsllipkdhvsrsksdtyyinethllrahtsaheleliskilddsdniksgflvsaevyrrdeidkthypvfhqaegaavrkvtkddlfvkepg 172
                   d    nvt+ i  lv++++hlke+hp+ i+r++i+++++s d  f +f+  +pvvt  + fd+llip dh++r+ sdtyyi +  llr+htsah+ e ++++ +        fl +++vyrrde+d++h+p fhq+eg  v++   + +++  p 
  MMETSP1174-20130828|37913_1  13 VDDPKNNVTPYIAALVGRDLHLKENHPIFIIRQKIQDYFNSLDTEFTIFNGEDPVVTPTQCFDDLLIPPDHPGRQSSDTYYITDDSLLRTHTSAHQSEHLRQGYES-------FLCTGDVYRRDEVDRSHFPAFHQMEG--VKLFPAETVGEDYPS 159
                  555556*************************************************************************************************999.......*************************5..666666677766665 PP

  == domain 2    score: 269.5 bits;  conditional E-value: 9.2e-84
    TIGR00469 213 yasdlevdlleqelkrslellvkelfnkkissliknkanntpkelkvrwvdayfpftapswelevyfkdewlellGcGlirqevllraGvkqsetiGyafGlGlerlamllfeipdirllwsrderflrqfskklltkfkpiskypqstrdlafwlpedkeviaqvsendlyelvrsvaGdlvesvklvdkfkhpktGkksvcyrivyrsmertltnaevnelqdqvasklvdeysve 450
                  ++   + +l+ ++lk +le+lv++lf++                   rw d yfpft+ps+ele+++++ wle+lGcG+i  +vl+   + +    G+afGlGlerlam+lf ipdirl+w++derf++qf ++ +  fkp+skyp +++d+afw+ped       +end+yel r+vaGdlve v+++d+f+hpkt ++s+cyri+yrsm+r+lt+ e+n lq+ v  ++ +  sve
  MMETSP1174-20130828|37913_1 163 WLESDACKLIAEDLKATLEGLVDHLFGPV----------------EKRWADDYFPFTEPSFELEIFYNGAWLEVLGCGVIHTDVLKNVELGHR--HGWAFGLGLERLAMILFSIPDIRLFWTEDERFTKQFKNGDVVTFKPYSKYPPCYKDIAFWVPEDY------QENDFYELTRNVAGDLVELVEVIDEFTHPKTNRRSLCYRITYRSMDRSLTDDEINVLQESVREQAPELLSVE 376
                  45666788999999999999999999985................47**************************************99877665..8**************************************************************95......69*********************************************************9988776666665 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   1.0   7.2e-23   7.4e-20      63     209 ..      29     145 ..      16     149 .. 0.91
   2 !  102.7   0.0   4.7e-33   4.8e-30     218     323 ..     174     276 ..     164     277 .. 0.95

  Alignments for each domain:
  == domain 1    score: 69.2 bits;  conditional E-value: 7.2e-23
    TIGR00468  63 akkiasgklhpltkvieeikeiflel..gftvekgpe.vetefynfdaLfiPqdHpaRdmqDtFylkdvadavkkaveegketgsrgwryefdeevarkllLRThttavqlraleeeenppirifsigrvfRrdavdatHlpeFhQvegl 209
                  ++ ++  ++hp+  ++++i+++f +l   ft+++g+  v t   +fd L iP dHp R+ +Dt+y++d                               +lLRTht+a q ++l++       +++ g v+Rrd+vd  H p FhQ+eg+
  MMETSP1174-20130828|37913_1  29 GRDLHLKENHPIFIIRQKIQDYFNSLdtEFTIFNGEDpVVTPTQCFDDLLIPPDHPGRQSSDTYYITD------------------------------DSLLRTHTSAHQSEHLRQGY---ESFLCTGDVYRRDEVDRSHFPAFHQMEGV 145
                  566667789**************998446******999******************************..............................89********9999999887...569************************98 PP

  == domain 2    score: 102.7 bits;  conditional E-value: 4.7e-33
    TIGR00468 218 knLkglleeflkklfgetevrfrpsyfPfTepSvEvdvklvegkgWlEvlgaGivrpevlealGiekelkvlafGlgieRlamlkygikdiRdlyendlkflkqfk 323
                  ++Lk +le ++ +lfg +e r+   yfPfTepS+E ++   +g  WlEvlg+G+++ +vl+++ + +  ++ afGlg+eRlam+ + i diR ++++d +f kqfk
  MMETSP1174-20130828|37913_1 174 EDLKATLEGLVDHLFGPVEKRWADDYFPFTEPSFELEIFY-NGA-WLEVLGCGVIHTDVLKNVELGH-RHGWAFGLGLERLAMILFSIPDIRLFWTEDERFTKQFK 276
                  79*************************************9.566.******************9999.89*********************************997 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.4e-20   1.5e-17     693     798 .]     273     378 .]     259     378 .] 0.92

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 1.4e-20
    TIGR00472 693 eslkk..vpkykeiskfpavtrDisilvdkdvevneiiklikkeglklleevelfDvYegknvgegkkslalrlvlrdkertLteeeinkivekvlnllkeklgaelr 798
                  +++k+  v+ +k++sk+p +++Di++ v++d + n++++l+++  ++l+e ve++D ++    +++ +sl +r+++r+ +r Lt++ein   e+v++++ e l +e+r
  MMETSP1174-20130828|37913_1 273 KQFKNgdVVTFKPYSKYPPCYKDIAFWVPEDYQENDFYELTRNVAGDLVELVEVIDEFTHP--KTNRRSLCYRITYRSMDRSLTDDEINVLQESVREQAPELLSVEVR 378
                  4555557899*************************************************99..667**********************************99999987 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-07   0.00047     245     338 ..     166     262 ..     127     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.6e-07
    TIGR00470 245 vddGkavaeglleql.Gfekfrfrkdekk.skyyipetqtevyayhpklkewievatfGvyspialakydidv.evmnlGlGverlamilygyedvr 338
                   d  k +ae l + l G+    f + ek+ +  y p t+          + w+ev   Gv     l + ++ + +   +GlG+erlamil+   d+r
  MMETSP1174-20130828|37913_1 166 SDACKLIAEDLKATLeGLVDHLFGPVEKRwADDYFPFTEPSFELEIFYNGAWLEVLGCGVIHTDVLKNVELGHrHGWAFGLGLERLAMILFSIPDIR 262
                  588899999999987789999999999985567888876533222233469*******************97615789*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.46
# Mc/sec: 1084.61
//
Query:       MMETSP1174-20130828|37922_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|37915_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-21   72.3   0.0    8.7e-21   71.9   0.0    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   2.1e-24   8.7e-21     322     574 ..      59     328 ..      45     346 .. 0.78

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 2.1e-24
    TIGR00204 322 elakkdek.ivgitaamreGsg..ldklskkfPk.ryfdvaiaeqhavtlaaalaieGlkPvvaiys.tflqraydqvvhdvaiq....klpvllaidraGivGa.dG..ethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgveltee.....ekleiGksellrkgedilllgfGtlveealevaeelke.kgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqnv 574
                  e+a++d+  i+g   a  +G+    ++l +k+ + r++d  i+e     la++ a + l+Pvv   +  f  +a dqv+  +a q       + + i   G  Ga  G  + h   f  ++  s+P l ++aP + ++++ +l+ a++  +  i l      +v  +l +e      +leiGk+++ ++g d+ +++f ++v  +le+a+ l e +++++ v++lr ++Pld+  i + +k++++lvt+ee+  + Gvgs +  ++++ + 
  MMETSP1174-20130828|37915_1  59 EMARDDAVfIMGEEVAQYQGAYkvTKGLYQKYGDrRVIDTPITEMGFTGLACGAAYKDLRPVVEFMTfNFSMQAIDQVINSAAKQlymsAGTIPVPIVFRGPNGAaAGvaAQHSQCF-AAWYASVPGLKVVAPWNAEDCRGLLKAAIRDPNPVIFLENELLYGVPFPLSDEaqspdFTLEIGKANVEKEGTDVTIVAFSKMVGYSLEAAKILAEqHDLNVEVINLRSIRPLDIPAIVKSVKKTNRLVTVEEGWPQHGVGSEICAAMMETEA 328
                  67777764367777777777641145799999872589*************************9765368899*******9998833332234444444444443134114455555.57889***********************99876666665554445544444433222468********************************9975379*******************9**************************99998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1302.52
//
Query:       MMETSP1174-20130828|37926_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.9   0.1       0.84    7.0   0.0    2.0  2  TIGR02536 eut_hyp: ethanolamine utilization protein


Domain annotation for each model (and alignments):
>> TIGR02536  eut_hyp: ethanolamine utilization protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0002      0.84      82     100 ..      10      28 ..       2      49 .. 0.80
   2 ?    3.9   0.0    0.0019       7.9      76      99 ..      44      67 ..      32      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0002
    TIGR02536  82 filefLLkgkkvyileegi 100
                  +i ++L+kgk+++++ +  
  MMETSP1174-20130828|37926_1  10 KICNHLFKGKETIAMAKTF 28 
                  799***********99875 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0019
    TIGR02536 76 tnekekfilefLLkgkkvyileeg 99
                   e   +i + L+kgk+++++ + 
  MMETSP1174-20130828|37926_1 44 AMERALKICNQLFKGKDTIAVAKS 67
                 44555689999*****99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1174-20130828|37936_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 298.04
//
Query:       MMETSP1174-20130828|37937_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1174-20130828|37934_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-107  356.1  12.9   6.3e-107  355.8   8.9    1.0  1  TIGR00967 3a0501s007: preprotein translocase, SecY subunit


Domain annotation for each model (and alignments):
>> TIGR00967  3a0501s007: preprotein translocase, SecY subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.8   8.9  1.5e-110  6.3e-107       1     409 [.      42     476 ..      42     480 .. 0.98

  Alignments for each domain:
  == domain 1    score: 355.8 bits;  conditional E-value: 1.5e-110
    TIGR00967   1 kekllfTlvlLvlfrlgtfipvpgidasasqesiqqnalfellnllsggalgeisifaLGIsPyitAsiilQLLtgdvapllelqkeegekgrrklqqltryltlilaliqslvivatgislvnavsdlglllvlliviqltvgsvivmwldElisk.kGiGnGisllifagIvatlpkallqatev.....................rqskvralee.llraelevllvllltvlvilvvvfvqearrkipiqsakvkggrrskqstylplklnqagviPvIlasallslialisqilnskeg.......................glayflntiksls..lskpvkailY....liliilFsffYve.vqlnPeelAknlkkqgmvipGiRpgketekylkrvlnrltviGslflgliavlpnlleallglpkllalggtsllivvgvaietvkqiesel 409
                  +e++l+T+++L++f+++++ip++g+++ +s+     ++ f+++++l+++++g  ++++LGIsP++t+++++QLL+g  ++++e+++   +++r++++++++++ +i++l +++++v+ g    + +s lg++ ++li++ql++++v+v+ ldEl++k +G+G+Gisl+i+++ +++++++++++t+                      r++kvral+e ++r++l+++ +ll+tvlv+++v+++q  r+++ +++ + +g     q + +p+kl++++++P+Il+ al+s++++ sq++ ++++                       glay+++++ s+s  ls+p++ai+Y    l ++++Fs++++e ++ +P+++Ak+l++q+mv++G+R +     +l+r++++++++G++++g ++vl+++l+a+++        gt++l++v++++++++ +++e+
  MMETSP1174-20130828|37934_1  42 RERVLWTVITLFIFLVCCQIPLYGVQTTKSS-----DP-FYWMRVLLASNRG--TLMELGISPIVTSGLVMQLLAG--SNIIEVNQG-LKEDRALFSGAQKLFGIIITLGEAVAYVFSGAY--GPLSALGAGNAVLIIFQLFFAGVVVITLDELMQKgYGLGSGISLFIATNSCENIIWKAFSPTTIntgrgtefegavialfhliitRTDKVRALKEaFYRQNLPNISNLLATVLVFVIVIYFQGWRVDLQVKYQRHRG-----QLASYPIKLFYTSNMPIILQTALVSNLYFFSQFFHNRAPnnilvkllgkwstegggpniptgGLAYYISPPLSMSeiLSDPIHAIIYivfvLTSCAFFSKTWIEvSGSSPRDVAKQLRDQQMVMKGHRDTA-LITVLNRYIPTAAAFGGMCIGGLTVLADFLGAIGS--------GTGILLAVTIIYQYYEMFAKEQ 476
                  79**************************998.....99.*************..**********************..99**99966.99**************************99933..79*************************************************************9**********************************************************************999.....*********************************999999*******************************99999************9999999**********99************************9.899********************************........******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1212.81
//
Query:       MMETSP1174-20130828|37947_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 128.77
//
Query:       MMETSP1174-20130828|37981_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 817.48
//
Query:       MMETSP1174-20130828|38099_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-50  166.3   1.6      5e-50  166.0   1.1    1.1  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
    2.8e-21   73.8   0.2    3.3e-21   73.5   0.1    1.1  1  TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit
    5.4e-11   39.8   4.3      7e-11   39.4   3.0    1.1  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
    1.1e-10   39.0   3.0    1.8e-10   38.3   2.0    1.3  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
    2.5e-10   38.2   5.0    1.2e-09   36.0   4.2    1.6  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    9.8e-08   29.6  11.7    7.1e-06   23.5   0.9    2.2  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    1.9e-06   24.6  12.2    7.1e-06   22.8   8.5    1.7  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
    2.3e-06   24.6   6.7     0.0031   14.3   0.5    2.1  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
      1e-05   22.8   2.5    1.3e-05   22.4   1.7    1.2  1  TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein family
    1.5e-05   22.2   0.5    1.8e-05   21.9   0.4    1.1  1  TIGR04003 rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
    1.5e-05   22.8   7.1     0.0019   15.9   0.1    2.1  2  TIGR02486 RDH: reductive dehalogenase
    3.4e-05   20.4   4.7    4.6e-05   20.0   3.2    1.1  1  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
    3.4e-05   21.8  11.6      0.012   13.5   1.1    2.2  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
    0.00011   19.2   6.8    0.00031   17.7   4.7    1.7  1  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    0.00012   19.6   4.8    0.00017   19.0   3.3    1.2  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
     0.0005   17.0   2.4    0.00088   16.2   1.7    1.3  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    0.00071   17.6   7.7       0.01   13.9   0.5    2.3  2  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
     0.0011   16.9   9.5      0.051   11.4   0.8    2.1  2  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
     0.0013   16.5   7.2     0.0055   14.5   5.0    1.8  1  TIGR00402 napF: ferredoxin-type protein NapF
     0.0013   16.0   7.4     0.0031   14.8   5.2    1.4  1  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family
     0.0021   14.4   8.8     0.0035   13.7   6.1    1.3  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
     0.0024   15.6   6.6     0.0062   14.3   4.5    1.6  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
     0.0038   14.6   5.6     0.0076   13.6   3.9    1.4  1  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein
     0.0041   14.3   8.4      0.068   10.3   0.9    2.1  2  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
     0.0057   14.2   7.6       0.01   13.4   5.3    1.4  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
      0.007   12.5   8.8      0.012   11.8   6.1    1.3  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
     0.0079   11.8   6.0      0.015   10.9   4.2    1.3  1  TIGR00314 cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
  ------ inclusion threshold ------
      0.016   12.2  12.4      0.033   11.1   0.9    2.1  2  TIGR00276 TIGR00276: putative iron-sulfur cluster-binding protein
      0.029   11.7  11.5      0.043   11.1   0.9    2.1  2  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
      0.042    9.0   2.0      0.053    8.7   1.4    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.053   10.1   7.7       0.25    7.9   0.7    1.9  2  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
      0.075    9.7   4.6      0.049   10.3   0.1    2.1  2  TIGR00273 TIGR00273: iron-sulfur cluster-binding protein
       0.11    9.2   8.2        1.4    5.6   5.7    1.9  1  TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
       0.12    9.2   9.7        1.3    5.9   6.7    1.9  1  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
        1.3    4.5   9.1        9.5    1.6   6.3    1.8  1  TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
        1.9    5.5  10.0        1.2    6.1   1.0    2.1  2  TIGR02910 sulfite_red_A: sulfite reductase, subunit A


Domain annotation for each model (and alignments):
>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.0   1.1   4.4e-52     5e-50       1     121 []      39     160 ..      39     160 .. 0.99

  Alignments for each domain:
  == domain 1    score: 166.0 bits;  conditional E-value: 4.4e-52
    TIGR01971   1 glvltlkylfskkvtlqYPeeklalspryrgrivlkrdp.GeekCiaCelCakvCpaeaikvvkaeeekgkrrlkkyeinlgrCifCglCeevCPtdaivltkefelaseerkdlvyekeel 121
                  g++lt + + ++k+t++YP ek +lspr+rg+++l+r+p Gee+CiaC+lC+++Cpa+ai++++ ++e+g+r++++y+i++++Ci+Cg+C+e+CP+daiv+++++e+a+e++++l+y+ke+l
  MMETSP1174-20130828|38099_1  39 GFWLTAEAMAKPKITINYPFEKGPLSPRFRGEHALRRYPsGEERCIACKLCEAICPAQAITIEADQREDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATETHEELIYDKEKL 160
                  799********************************************************************************************************************987 PP

>> TIGR00403  ndhI: NADH-plastoquinone oxidoreductase, I subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.1   2.9e-23   3.3e-21      22     140 ..      36     158 ..      21     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 2.9e-23
    TIGR00403  22 igqgllvtldhmnrlpitiqypyeklipserfrgrihfe.....fdkciacevcvrvcpinlpvvdwelekaikkkelknysidfgvcifcgncveycptnclsmteeyelstydrhelnydqi 140
                  i +g+ +t + m++  iti+yp+ek   s rfrg   +       ++ciac++c  +cp +   ++ + + +  +k   +y id+  ci+cg c e cp + +    +ye++t    el yd+ 
  MMETSP1174-20130828|38099_1  36 IFRGFWLTAEAMAKPKITINYPFEKGPLSPRFRGEHALRrypsgEERCIACKLCEAICPAQAITIEADQREDGSRKT-TRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATETHEELIYDKE 158
                  67899*****************************7654321111689*******************99999988876.68*****************************************975 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   3.0   6.1e-13     7e-11       7      74 ..      81     144 ..      78     161 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 6.1e-13
    TIGR02512   7 skCilCerCvkaCekvqevkalkalneklktevatkleklldeseCisCGqCvlvCpvgaitekdeve 74 
                  ++Ci C+ C ++C  ++++ +    +++  +   ++++  +d+++Ci+CG C  +Cpv+ai e  + e
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIEAD--QREDGS--RKTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYE 144
                  79*************99994444..443333..45667789999*****************9976544 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   2.0   1.6e-12   1.8e-10     146     202 ..      79     145 ..      71     157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.6e-12
    TIGR02700 146 drkkcklcekcvdacpreais.....kkdg..vv...eirllkclGcGkckevcpynaikgGkevev 202
                    ++c  c+ c   cp +ai+     ++dg  ++   +i+++kc+ cG c+e+cp +ai +G ++e 
  MMETSP1174-20130828|38099_1  79 GEERCIACKLCEAICPAQAITieadqREDGsrKTtryDIDMTKCIYCGFCQEACPVDAIVEGPNYEF 145
                  579****************9632222223322122348************************99986 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   4.2   1.1e-11   1.2e-09      24      73 ..      80     138 ..      70     142 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.1e-11
    TIGR02179  24 kekCikCklCvlyCpeaaikekeek.........kveidYdyCkGCgiCaeeCpvkaie 73 
                  +e+Ci+CklC + Cp +ai+ + ++          ++id   C  Cg C e Cpv+ai 
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEADQredgsrkttRYDIDMTKCIYCGFCQEACPVDAIV 138
                  79***************9998887778999998888999999***************95 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.9   8.3e-05    0.0094     143     169 ..      81     107 ..      78     119 .. 0.73
   2 !   23.5   0.9   6.2e-08   7.1e-06      99     135 ..     106     142 ..      99     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 8.3e-05
    TIGR01944 143 dlCtgCdlCvepCPvdcielrpvaeel 169
                  + C++C+lC + CP ++i+++  + e 
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIEADQRED 107
                  578888888888888888887765544 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 6.2e-08
    TIGR01944  99 aekekekkvalideeeCiGCtkCiqaCPvDaivGaak 135
                  ++  ++ +   id  +Ci C  C +aCPvDaiv +++
  MMETSP1174-20130828|38099_1 106 EDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 142
                  33334444445999*******************9987 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   8.5   6.2e-08   7.1e-06     143     207 ..      82     139 ..      77     142 .. 0.47

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 6.2e-08
    TIGR04105 143 kCieCGkCkkaCpYnAivelerPCekaCpvkAissdekkkaeidedkCisCGaCvaaCPFgaisd 207
                  +Ci C  C++ Cp +Ai+      e         s ++++ +id  kCi CG C +aCP  ai++
  MMETSP1174-20130828|38099_1  82 RCIACKLCEAICPAQAITIEADQRE-------DGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVE 139
                  5555555555555555543221111.......123344445555555555555555555555543 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.5   2.7e-05    0.0031      10      30 ..      81     101 ..      72     107 .. 0.86
   2 !   13.6   0.5   4.4e-05     0.005       6      29 ..     116     139 ..     112     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.7e-05
    TIGR03224  10 eicircntceetcpidaithd 30 
                  e ci c  ce++cp +ait +
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIE 101
                  88****************965 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 4.4e-05
    TIGR03224   6 lidpeicircntceetcpidaith 29 
                   id   ci c  c+e cp+dai  
  MMETSP1174-20130828|38099_1 116 DIDMTKCIYCGFCQEACPVDAIVE 139
                  589999****************85 PP

>> TIGR02494  PFLE_PFLC: glycyl-radical enzyme activating protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.7   1.2e-07   1.3e-05      47      98 ..      80     138 ..      74     164 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.2e-07
    TIGR02494  47 eekClecgkCvevceae.......elveaaeskkaisierekceecgkcveaCpseAle 98 
                  ee+C+ c+ C+++c+a+       +  + ++++++ +i+ +kc  cg c+eaCp +A+ 
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQaitieadQREDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIV 138
                  789*************9765533322333345566788999**************9985 PP

>> TIGR04003  rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.4   1.6e-07   1.8e-05      49     101 ..      80     137 ..      63     165 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.6e-07
    TIGR04003  49 edrcvgcgrcvavcsagtsrlv.....dnsdgrtivevdrtdcqrclrcvaacltear 101
                  e+rc+ c  c a+c+a++ ++      d s ++t  ++d t+c  c  c  ac  +a 
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEadqreDGSRKTTRYDIDMTKCIYCGFCQEACPVDAI 137
                  79**************998875221113455677889****************99985 PP

>> TIGR02486  RDH: reductive dehalogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   1.8    0.0014      0.16     207     232 ..      83     108 ..      80     121 .. 0.79
   2 !   15.9   0.1   1.7e-05    0.0019     207     249 ..     122     165 ..     115     180 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0014
    TIGR02486 207 CetCgkCAdeCPsqaIskekeptwdv 232
                  C  C+ C   CP+qaI+ e++++ d 
  MMETSP1174-20130828|38099_1  83 CIACKLCEAICPAQAITIEADQREDG 108
                  999**************999875443 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.7e-05
    TIGR02486 207 CetCgkCAdeCPsqaIskekeptwdveaaek.kesgennpkkkw 249
                  C  Cg C ++CP++aI ++++  +  e +e+  +++e+   +  
  MMETSP1174-20130828|38099_1 122 CIYCGFCQEACPVDAIVEGPNYEFATETHEElIYDKEKLLSNGD 165
                  999****************9865555444443444443333333 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.2     4e-07   4.6e-05     361     417 ..      79     135 ..      69     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4e-07
    TIGR01945 361 kekaCirCgkCveaCPvsLlPqqlallakaeeydeaeelnlmDCieCGsCayvCPsk 417
                   e+ Ci C  C   CP++ +  + +++   +   +  + +++ Ci CG C   CP +
  MMETSP1174-20130828|38099_1  79 GEERCIACKLCEAICPAQAITIEADQREDGSRKTTRYDIDMTKCIYCGFCQEACPVD 135
                  5789**************9999999999988889999999***************76 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.0   0.00012     0.014      69      89 ..      80     100 ..      76     102 .. 0.89
   2 !   13.5   1.1   0.00011     0.012       6      37 ..     107     136 ..     102     159 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00012
    TIGR02936  69 eenCiGCeaCarvCpkkcyth 89 
                  ee+Ci C+ C+ +Cp ++ t 
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITI 100
                  799**************9986 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 0.00011
    TIGR02936   6 dgkewvpkyvesideekCigCgrCfkvCgrdv 37 
                  dg++ + +y  +id  kCi Cg C  +C+ d 
  MMETSP1174-20130828|38099_1 107 DGSRKTTRY--DIDMTKCIYCGFCQEACPVDA 136
                  555555555..799999999999999998775 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   4.7   2.7e-06   0.00031     186     233 ..      86     139 ..      44     148 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.7e-06
    TIGR02066 186 iPlvvaacPtaalkpke......ekekkslevdeekcilcGncytncpaldlad 233
                    l  a cP+ a++ ++       +++++ ++d  kci+cG c++ cp   + +
  MMETSP1174-20130828|38099_1  86 CKLCEAICPAQAITIEAdqredgSRKTTRYDIDMTKCIYCGFCQEACPVDAIVE 139
                  4456689******997433453334556789****************9766665 PP

>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   3.3   1.5e-06   0.00017     199     251 ..      79     137 ..      69     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.5e-06
    TIGR02163 199 dkekCdkCmdClevCpekqvlelalkk......eestlvlsgdCisCgrCidvCeedvl 251
                   +e+C  C  C ++Cp + +   a ++      +    +    Ci Cg C ++C+ d++
  MMETSP1174-20130828|38099_1  79 GEERCIACKLCEAICPAQAITIEADQRedgsrkTTRYDIDMTKCIYCGFCQEACPVDAI 137
                  5899************998855544434555545556688899************9986 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.7   7.7e-06   0.00088     168     219 ..      80     138 ..      72     149 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.7e-06
    TIGR02912 168 adrcvgcgacvkvckkkavgalslen....ykvvr...eeekcigcgecvlkcptgawt 219
                  ++rc++c+ c   c  +a+   + +      k+ r   +  kci cg c ++cp  a  
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEADQRedgsRKTTRydiDMTKCIYCGFCQEACPVDAIV 138
                  589*************9998765443111145555433678*************99865 PP

>> TIGR03048  PS_I_psaC: photosystem I iron-sulfur protein PsaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5     9e-05      0.01      45      75 ..      81     111 ..      72     115 .. 0.85
   2 ?    7.3   0.9      0.01       1.2       9      25 ..     121     137 ..     115     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9e-05
    TIGR03048  45 edcvGckrcesacptdflsvrvylgaettrs 75 
                  e c+ ck ce+ cp++ +++    +++ +r 
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIEADQREDGSRK 111
                  78***************99998888777775 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.01
    TIGR03048   9 tciGctqcvracptdvl 25 
                   ci c  c  acp+d++
  MMETSP1174-20130828|38099_1 121 KCIYCGFCQEACPVDAI 137
                  69999999999999975 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.8   0.00045     0.051      94     118 ..      80     104 ..      77     112 .. 0.87
   2 !   10.1   1.1    0.0011      0.13      92     111 ..     117     136 ..     105     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00045
    TIGR02951  94 qdkciGckycalacpygapqyeeek 118
                  +++ci ck c+  cp +a  +e+++
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEADQ 104
                  689**************99888776 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0011
    TIGR02951  92 vdqdkciGckycalacpyga 111
                  +d  kci c  c+ acp +a
  MMETSP1174-20130828|38099_1 117 IDMTKCIYCGFCQEACPVDA 136
                  68899************998 PP

>> TIGR00402  napF: ferredoxin-type protein NapF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   5.0   4.8e-05    0.0055      36      89 ..      82     144 ..      75     154 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.8e-05
    TIGR00402  36 rCtrCgeCisaCennil.....qkgdagy..pevefdnaeCslCgkCaeaCpeslls..Prdt 89 
                  rC  C  C ++C+++ +     q++d+    +  ++d ++C +Cg C eaCp +++   P+++
  MMETSP1174-20130828|38099_1  82 RCIACKLCEAICPAQAItieadQREDGSRktTRYDIDMTKCIYCGFCQEACPVDAIVegPNYE 144
                  799999999999988773333334444441144568899999999999999987664235555 PP

>> TIGR04041  activase_YjjW: glycine radical enzyme activase, YjjW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   5.2   2.7e-05    0.0031      37      87 ..      77     137 ..      74     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.7e-05
    TIGR04041  37 PetinkCksCgeCveeCpagalsled..........gkvvwdkekCveCdeCikvCkkkss 87 
                  P+  ++C +C+ C + Cpa+a+++e            +   d +kC+ C  C ++C+ ++ 
  MMETSP1174-20130828|38099_1  77 PSGEERCIACKLCEAICPAQAITIEAdqredgsrktTRYDIDMTKCIYCGFCQEACPVDAI 137
                  777899*****************9876788877643344557889***********98875 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   6.1     3e-05    0.0035     299     347 ..      78     137 ..      69     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3e-05
    TIGR03287 299 ynperClnCkvClveekCPveaikk.............dkeldtedCfgCGvCaeiCpsgvv 347
                    +erC+ Ck C+    CP +ai                 ++d ++C  CG+C+e Cp +++
  MMETSP1174-20130828|38099_1  78 SGEERCIACKLCE--AICPAQAITIeadqredgsrkttRYDIDMTKCIYCGFCQEACPVDAI 137
                  4579********6..58****9965455566665444444677899************8875 PP

>> TIGR02060  aprB: adenylylsulfate reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   4.5   5.4e-05    0.0062       8      73 ..      81     148 ..      78     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.4e-05
    TIGR02060   8 ekcdgckalektacvyicpndlmtldkekr.......kaynrepdmcwecyscvkicpqgaidvrgyadfapl 73 
                  e+c  ck      c+ icp++ +t+++++r         y+++   c  c  c  +cp +ai   +  +fa  
  MMETSP1174-20130828|38099_1  81 ERCIACK-----LCEAICPAQAITIEADQRedgsrktTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATE 148
                  7899999.....9***********9876542222111469999999****************98888888765 PP

>> TIGR00397  mauM_napG: MauM/NapG family ferredoxin-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   3.9   6.7e-05    0.0076     138     189 ..      83     134 ..      78     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 6.7e-05
    TIGR00397 138 glncsicvrvcpirgeaislkpiknergllqipvvdsakctgcgtcekhcvl 189
                   ++c +c  +cp +  +i  ++ +   ++     +d +kc  cg c+  c +
  MMETSP1174-20130828|38099_1  83 CIACKLCEAICPAQAITIEADQREDGSRKTTRYDIDMTKCIYCGFCQEACPV 134
                  679*********9988888888888888899999*************99965 PP

>> TIGR03149  cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.6    0.0027      0.31     124     146 ..      80     102 ..      77     112 .. 0.84
   2 !   10.3   0.9    0.0006     0.068     116     140 ..     111     135 ..     107     150 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0027
    TIGR03149 124 kekcvgcqyclaacpyrvrfinp 146
                  +e+c+ c+ c a+cp +   i+ 
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEA 102
                  689************99876665 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0006
    TIGR03149 116 etgivdvdkekcvgcqyclaacpyr 140
                  +t   d+d  kc+ c++c  acp  
  MMETSP1174-20130828|38099_1 111 KTTRYDIDMTKCIYCGFCQEACPVD 135
                  56678999**************976 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   5.3   9.1e-05      0.01     175     218 ..      82     135 ..      78     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 9.1e-05
    TIGR03294 175 lcmGcGtcaaacptraielv.....dG.....rpevnkdlcikcGacyvqcpra 218
                   c+ c  c a cp++ai+++     dG     r +++  +ci cG c  +cp  
  MMETSP1174-20130828|38099_1  82 RCIACKLCEAICPAQAITIEadqreDGsrkttRYDIDMTKCIYCGFCQEACPVD 135
                  5****************99633333443332356788999************65 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   6.1    0.0001     0.012     542     595 .]      73     137 ..      63     137 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0001
    TIGR03336 542 avklkvdeekCikCkkCikelgCPaie............eedkevvidkl.CsgCgvCvqvCpvdai 595
                   +++   ee+Ci Ck C     CPa              ++  +  id + C+ Cg C + Cpvdai
  MMETSP1174-20130828|38099_1  73 LRRYPSGEERCIACKLCEA--ICPAQAitieadqredgsRKTTRYDIDMTkCIYCGFCQEACPVDAI 137
                  56777889*********76..899743335566543332233456799999***************8 PP

>> TIGR00314  cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   4.2   0.00013     0.015     399     453 ..      81     136 ..      75     166 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
    TIGR00314 399 kkctecgnctlacpn.slrvkealakakkGdls..kleeleelclacgrceqvcpkni 453
                  ++c  c  c+  cp  ++ ++   ++ ++G ++  ++   + +c+ cg c+++cp + 
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAqAITIEA--DQREDGSRKttRYDIDMTKCIYCGFCQEACPVDA 136
                  58************61555544..4455666551144455899***********9764 PP

>> TIGR00276  TIGR00276: putative iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   9.4     0.066       7.5     158     222 ..      80     133 ..      74     133 .. 0.87
   2 ?   11.1   0.9   0.00029     0.033     160     179 ..     121     140 ..     118     164 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.066
    TIGR00276 158 eerCgkCtkCldaCptqAlvepevvdarrcisvltiekeaalpeelasnlgnrvagCdiCqevCP 222
                  eerC  C+ C  +Cp qA+      d r+ +s  t   +          +  +++ C+ Cqe CP
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITI--EADQREDGSRKTTRYDI--------DMTKCIY-CGFCQEACP 133
                  89*****************87..68888888888877777........7888887.********9 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00029
    TIGR00276 160 rCgkCtkCldaCptqAlvep 179
                  +C  C+ C +aCp +A+ve 
  MMETSP1174-20130828|38099_1 121 KCIYCGFCQEACPVDAIVEG 140
                  7999**************94 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.3     0.018       2.1     140     156 ..      81      97 ..      73     104 .. 0.87
   2 ?   11.1   0.9   0.00037     0.043     137     158 ..     117     138 ..      99     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.018
    TIGR00384 140 seCieCglCyssCpakk 156
                  ++Ci C lC + Cpa++
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQA 97 
                  57************986 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00037
    TIGR00384 137 kelseCieCglCyssCpakkln 158
                   ++++Ci Cg C  +Cp+ + +
  MMETSP1174-20130828|38099_1 117 IDMTKCIYCGFCQEACPVDAIV 138
                  47999***********987654 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.4   0.00046     0.053     882     937 ..      82     136 ..      62     141 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00046
    TIGR03315 882 rclecsyvcekcvdvcPnranisiavagfrd.kfqiv..hld.amcnecGncatfcPydg 937
                  rc+     c+ c  +cP +a i+i+  + +d + ++    +d + c  cG c++ cP d+
  MMETSP1174-20130828|38099_1  82 RCI----ACKLCEAICPAQA-ITIEADQREDgSRKTTryDIDmTKCIYCGFCQEACPVDA 136
                  554....4789999****98.788874443314445411556447************885 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.7    0.0022      0.25      31      67 ..      59      96 ..      45     114 .. 0.73
   2 ?    7.8   5.1    0.0023      0.26       5      69 ..      81     137 ..      77     166 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0022
    TIGR03379 31 qagpdgerlrlksa.elydealkyctnckrcevacpsd 67
                 + gp   r+r   a   y +    c+ ck ce  cp++
  MMETSP1174-20130828|38099_1 59 EKGPLSPRFRGEHAlRRYPSGEERCIACKLCEAICPAQ 96
                 45666666666554245777888999999999999986 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0023
    TIGR03379   5 escikctvctvvcpvakanplypgpkqagpdgerlrlksaelydealkyctnckrcevacpsdvk 69 
                  e+ci c  c ++cp      +     +   dg r    ++  yd  +  c+ c  c+ acp d  
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIE----ADQREDGSR----KTTRYDIDMTKCIYCGFCQEACPVDAI 137
                  79************7655443....334578988....45679*99***************9864 PP

>> TIGR00273  TIGR00273: iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.5       0.3        34     294     307 ..      82      95 ..      73     103 .. 0.85
   2 ?   10.3   0.1   0.00043     0.049     291     314 ..     118     141 ..     106     148 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.3
    TIGR00273 294 aCirCgaClneCPv 307
                  +Ci C  C   CP+
  MMETSP1174-20130828|38099_1  82 RCIACKLCEAICPA 95 
                  79999999999997 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00043
    TIGR00273 291 evlaCirCgaClneCPvyrkiGgh 314
                  ++ +Ci Cg C+  CPv   + g 
  MMETSP1174-20130828|38099_1 118 DMTKCIYCGFCQEACPVDAIVEGP 141
                  5678************97777665 PP

>> TIGR02745  ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.7     0.012       1.4     224     267 ..      75     132 ..      46     139 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.012
    TIGR02745 224 akaegklgdCvdCeaCvqvCPtg.iDI....R.dGlQ.........leCInCaeCiDAC 267
                     +  +  C+ C++C ++CP+  i I    R dG            +CI C+ C +AC
  MMETSP1174-20130828|38099_1  75 RYPS-GEERCIACKLCEAICPAQaITIeadqReDGSRkttrydidmTKCIYCGFCQEAC 132
                  2222.4667************75344433334345432222222223699999999999 PP

>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.7     0.012       1.3     123     188 ..      80     148 ..      77     159 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
    TIGR01582 123 hekcigcgyciagcpfniprldk..vdnrayk.ctlcvdrvsvgqepacvktcptnaisfgskedmkkr 188
                  +e+ci c++c a cp +   ++    ++ + k   + +d         c  +cp +ai+ g   ++ ++
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQAITIEAdqREDGSRKtTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATE 148
                  578999999999999876665440023334441457899999999999999999999998877766554 PP

>> TIGR02176  pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   6.3     0.084       9.5     683     754 ..      81     135 ..      77     161 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.084
    TIGR02176 683 dkciqcnqcafvcPhaairavlldeeelekapegfksldakgkeleglkyriqvsvedctGcglcvdicPak 754
                  ++ci c+ c  +cP  ai + + + e+ +                + ++y i   ++ c+ cg c ++cP  
  MMETSP1174-20130828|38099_1  81 ERCIACKLCEAICPAQAITIEADQREDGS---------------RKTTRYDI--DMTKCIYCGFCQEACPVD 135
                  78999999999999999987554433322...............22345554..456788888888888876 PP

>> TIGR02910  sulfite_red_A: sulfite reductase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.0     0.011       1.2     219     236 ..      80      97 ..      70     112 .. 0.84
   2 ?    4.2   1.2      0.04       4.5     218     234 ..     118     134 ..     103     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.011
    TIGR02910 219 dsrciacGrcntvcptct 236
                  ++rciac  c+ +cp+ +
  MMETSP1174-20130828|38099_1  80 EERCIACKLCEAICPAQA 97 
                  68*************865 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.04
    TIGR02910 218 ydsrciacGrcntvcpt 234
                    ++ci cG c+ +cp 
  MMETSP1174-20130828|38099_1 118 DMTKCIYCGFCQEACPV 134
                  44689999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.60
# Mc/sec: 400.37
//
Query:       MMETSP1174-20130828|38104_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1174-20130828|38108_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         5  (0.00121892); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 168.95
//
Query:       MMETSP1174-20130828|38103_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-52  175.1   0.0    4.6e-52  174.4   0.0    1.3  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   1.1e-55   4.6e-52      19     190 ..      76     256 ..      64     258 .. 0.92

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 1.1e-55
    TIGR00493  19 diysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaG.........laiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvl 190
                  d+ s ll++rii+++  +  +v+++++a+ll+l+ e ++k i++yinspG   + G         +ai d m+++kpdv+tic+G+a    a+ll+ G+kGkr+alpn+ im+hqp   a+Gqasdi i+a+e+l+ +k   ella+  G+++e++ +d  r ++ls +eak+yG+id v+
  MMETSP1174-20130828|38103_1  76 DLPSLLLHNRIIYIGMPLVPQVTELVIAELLYLNYESSTKPITMYINSPGTMNSQGqsvgfeteaFAIADVMKYVKPDVATICVGQAYGAAAMLLSMGTKGKRFALPNASIMLHQPRTQARGQASDIAIKAREVLTNRKVTCELLAKACGKDIEEVIRDAGRTKYLSPSEAKDYGMIDGVI 256
                  77899********************************************9654443222222222899**************************************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 910.72
//
Query:       MMETSP1174-20130828|38113_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   14.6   0.0       0.21    7.4   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   5.1e-05      0.21     129     158 ..       8      38 ..       2      43 .. 0.78
   2 !    6.6   0.0   8.5e-05      0.35     127     150 ..      41      64 .]      31      64 .] 0.85

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 5.1e-05
    TIGR00870 129 tkgitalilAihkqnyeivklLle.kgasve 158
                    g t+l +A+++ n+ iv+ L +   a+v+
  MMETSP1174-20130828|38113_1   8 DDGSTPLYMAAQEGNLDIVRYLAHeAHANVN 38 
                  5799****************99741456665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 8.5e-05
    TIGR00870 127 eftkgitalilAihkqnyeivklL 150
                  +   g t+l +A+++ n+ +v+ L
  MMETSP1174-20130828|38113_1  41 RTDSGCTPLYIAAEEGNLDVVRYL 64 
                  556899***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1174-20130828|38138_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-07   27.5   0.1    7.2e-07   27.0   0.0    1.2  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.8e-10   7.2e-07      11      56 ..      71     114 ..      63     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.8e-10
    TIGR02381  11 nakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqge 56 
                  n +GfGfi ++  +eD+f h s+i+ DG   L  G  v +  ++++
  MMETSP1174-20130828|38138_1  71 NDRGFGFIKPDDGGEDVFCHVSAIE-DG-NCLDEGATVYYIKEHDD 114
                  789*********************8.77.57888888888665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 741.17
//
Query:       MMETSP1174-20130828|38136_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-38  129.9   0.0      3e-38  129.5   0.0    1.0  1  TIGR03588 PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
    1.2e-34  117.6   1.1    1.1e-33  114.4   0.8    2.1  1  TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family
    8.3e-20   68.7   0.4    1.3e-19   68.1   0.2    1.2  1  TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
    7.8e-08   29.5   0.0    1.4e-07   28.7   0.0    1.4  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    9.1e-07   25.7   0.4    1.5e-06   25.0   0.3    1.2  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    1.1e-05   22.4   0.3    2.4e-05   21.3   0.2    1.5  2  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
     0.0003   17.4   0.1    0.00046   16.7   0.1    1.2  1  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
  ------ inclusion threshold ------
      0.013   12.3   0.0      0.023   11.5   0.0    1.3  1  TIGR02006 IscS: cysteine desulfurase IscS
      0.015   12.2   0.0      0.021   11.7   0.0    1.2  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
      0.021   11.9   0.0       0.03   11.4   0.0    1.2  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA


Domain annotation for each model (and alignments):
>> TIGR03588  PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   7.4e-41     3e-38      30     377 ..      96     441 ..      93     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 129.5 bits;  conditional E-value: 7.4e-41
    TIGR03588  30 pkveafEealaeavgakyavavnsaTsaLhlavlalgvkegdevlttpitFvAtancalyaGakvvfvdvdkkdgnldekalekklaaaekkkikvivpVdfaGksvdleaiaalakkhglklieDasHalGaeykgkkvGkcryaditvfSFHpvKiittaEGGavttndeelaerlkllrsHgitkdseklekqeeglwyyevqel..GfNyRlsdiqaALglsqlkkldefvekRreiaalYdealkela.vvllleesksksalHLyvillkaelklerkevfealreagigvqvhYiPvhlqplykk...lfkeadlpkaeefykselslPlfpelseedvkkvvetlr 377
                  ++v++ E+++++++g ky va+ns  saL+l +l +gv++gd+v+t + tF A   ++ +a  + v+v+  ++   +d ++le+k++++     k ++  +++G+ + +++i +l+++hg+ lieD++H++G + +gk+ G+  ++ i+  S  + K++ ++EGG  +tnd+ + +++ +    + ++ s+k+ +  + +   ++ +    +  R+  ++aA+   q++ +de  +k ++   + +e+l++l+ v+++++ ++ + +   + i+++   + + k+v++  +++++ v++   P ++  ++k+   l ++ +lpk+e+  ks++ + +  + ++ed +++ + l+
  MMETSP1174-20130828|38136_1  96 SVVSQVEKQICDYTGHKYCVALNSCGSALFLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVET-EEGFRIDLEDLEAKMVSS---GSKYLMLSHMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKWNGKHTGH--HGRIAAISSQSYKMLNSGEGGFFLTNDPVVGAKAAVYAG-AYERLSTKHITVPDVEVFGDLPNElpNYSLRMHAVTAAIIRPQIATIDERAAKYNKRFYKLAEQLNQLPhVFVPMQYDEVSIVGDSMQITFRDMSEAQIKAVMDGCKKRNLHVELFGDPSNA-RYFKNwkfLPADCELPKTEKIIKSTIDVRMPLMWDDEDYDTMFSVLK 441
                  57899******************************************************9999999***9.8999************55...5899999*******************************************..*******************************99998765.677877788888887777776554115666***************************************9999999999999999999***9999***********************9765.45555433667888*********999988877778888777777666 PP

>> TIGR04181  NHT_00031: aminotransferase, LLPSF_NHT_00031 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.8   2.7e-36   1.1e-33      31     284 ..      97     345 ..      92     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 114.4 bits;  conditional E-value: 2.7e-36
    TIGR04181  31 yvdefEeklaeytgakkavavvnGtaaLhlalkllgvkegdeVivpaltFvAtanaisylgaePvfvdvdeetlgldpealeefleeeaekkegklinketgrrikavvpvHvfGnpadleeileiakeynlklvEDaaesLGslykgkhtGtfgklgvlSFNgNKiiTtggGGaivtndeelakra.......khlsttAkkphelefeHd....evgyNyRlpnlnAalgvaqlekleeflekKrelaeaYkellkelegvel 284
                   v+++E+++++ytg k++va+++  +aL l+l  +gv++gd+V+++a+tF A   ai++++ + v+v+ + e + +d e le+ + +                  k ++  H+ G  a++++i+++++e++++l+ED+a s+G +++gkhtG +g+++++S  + K++ +g GG  +tnd  + ++a         lst+  +  ++e + d       y  R+  + Aa+   q+ +++e+ +k  + + + +e+l++l++v +
  MMETSP1174-20130828|38136_1  97 VVSQVEKQICDYTGHKYCVALNSCGSALFLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVETE-EGFRIDLEDLEAKMVSSG---------------SKYLMLSHMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKWNGKHTGHHGRIAAISSQSYKMLNSGEGGFFLTNDPVVGAKAavyagayERLSTKHITVPDVEVFGDlpneLPNYSLRMHAVTAAIIRPQIATIDERAAKYNKRFYKLAEQLNQLPHVFV 345
                  699******************************************************************9.99********99887744...............367899**********************************************************************988777622222224578877776677766542221457999*******************999888877777888888776544 PP

>> TIGR02379  ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.2   3.1e-22   1.3e-19      36     204 ..     101     268 ..      77     275 .. 0.91

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 3.1e-22
    TIGR02379  36 ceawleerlgakkalltpsctaalelaallldiqeGdevimpsytfvstanafvlrGakivfvdiredtlnidekkieaa.itertkaivpvhyaGvacdmdtimalankyelfviedaaqGlmstykgralGsiGhlgafsfhetknytsGgeGGallindkalierae 204
                   e+ + + +g k ++  +sc +al l+ l   +q+Gd+v+  ++tf +   a     +  v+v+ + + + id + +ea  +++ +k ++  h  G   +md i+ l++++ +++ied a  +  +++g+  G  G ++a s    k   sG eGG  l nd  +  +a 
  MMETSP1174-20130828|38136_1 101 VEKQICDYTGHKYCVALNSCGSALFLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVETE-EGFRIDLEDLEAKmVSSGSKYLMLSHMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKWNGKHTGHHGRIAAISSQSYKMLNSG-EGGFFLTNDPVVGAKAA 268
                  56666777888889999***********************************99999999999976.5799*******9725677899************************************************************9999.*********98887775 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.4e-10   1.4e-07      69     215 ..     118     260 ..      82     378 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3.4e-10
    TIGR01977  69 nnattalNialkG.ilkegkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkd.tklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvl.eidvekl..aidllaftGHKgLlgpqGiggllikek 215
                  n+   al + l    ++ g++v+t ++   aV   +e+ k        +v++ee  ++d+e+++ ++ +  +k ++lsh   + G i  +++i +l++e+g+ ++ D a ++Gv  + + + +  +i+++     K L   +G gg++++++
  MMETSP1174-20130828|38136_1 118 NSCGSALFLSLLCaGVQPGDKVMTNAFTFTAVPSAIEHAKGS----AVYVETEEGFRIDLEDLEAKMVSSgSKYLMLSH---MRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKwNGKHTGHhgRIAAISSQSYKML--NSGEGGFFLTND 260
                  45556666666554789*******************999988....6799*************9988776699**9999...68*****************************9523344333114555555555544..566677766555 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   3.6e-09   1.5e-06      65     197 ..      95     227 ..      90     247 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.6e-09
    TIGR00858  65 sklheelEeelaefkgteaallfss.GylaNlgvisalvekedlvlsDklnHAslidgarLskakvlryk.....HndvealerlLekergerrklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGe 197
                  s++ +++E+++++++g++ ++ ++s G +  l+++ a v+ +d v++ ++   ++  +++ +k + +  +       d+e+le+++ ++   ++ l+++     m G +a ++++v+l+e+++ +l+ D AH++Gv  +
  MMETSP1174-20130828|38136_1  95 SSVVSQVEKQICDYTGHKYCVALNScGSALFLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVEteegfRIDLEDLEAKMVSSG--SKYLMLSH----MRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKWN 227
                  567889**************988774777789*********************9999999888665544411222468899999988876..77788775....*******************************9654 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   6.7e+02     265     287 ..      32      54 ..      30      60 .. 0.76
   2 !   21.3   0.2   5.7e-08   2.4e-05      85     257 ..      98     263 ..      85     268 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.6
    TIGR01822 265 rpylfsnslapavvgasikvlel 287
                  r ++ +ns+ap vv  + + +++
  MMETSP1174-20130828|38136_1  32 RHWVATNSIAPPVVDLGKEPVKI 54 
                  678889********988765555 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 5.7e-08
    TIGR01822  85 hkelekklaeflgtedailyascfdan.gGlfeallgeedaiisdalnhasiidGvrlckakryrye.....nadledleaklkearaagarlrliatdGvfsmdGtiapldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGGfttakkevv 257
                    ++ek+++++ g++ ++  +sc  a    l+ a + + d ++++a+  +++   +   k      e     + dledleak+     +g+++ ++       m G ia++d+i++l+e+++  ++ d +h++G+   +G+     ++  +++  i++   k l    GGf  ++ +vv
  MMETSP1174-20130828|38136_1  98 VSQVEKQICDYTGHKYCVALNSCGSALfLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVEteegfRIDLEDLEAKMVS---SGSKYLMLS-----HMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVK-WNGK----HTGHHGRIAAISSQSYKMLNSGEGGFFLTNDPVV 263
                  5688999999999999999999876531344444445679999999999999999999997664443122224689999998875...466676654.....6********************9999999999874.3343....4577899999999999999999999998888887 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.1e-06   0.00046      82     218 ..     100     235 ..      94     247 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.1e-06
    TIGR01825  82 eleeklakfkkteaalvfqs.GfntnlgvlsallrkedivlsdelnhasiidGlrlskakkkiyk.....hvdmddlerklrenkekkkklivtdGvfsmdGdvaplpeivelaekydalvyvddahgsGvlGekGrGtvkhf 218
                  ++e+++ ++   +  ++++s G +  l+ l a ++ +d v+++ +  +++   +  +k + + ++      +d++dle+k+  + +k   l++      m G +a +++iv l e++++  + d ah+ Gv   +G+ t +h 
  MMETSP1174-20130828|38136_1 100 QVEKQICDYTGHKYCVALNScGSALFLSLLCAGVQPGDKVMTNAFTFTAVPSAIEHAKGSAVYVEteegfRIDLEDLEAKMVSSGSKY--LML----SHMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKW-NGKHTGHHG 235
                  6788888888888888777635556678888888888888888888888888888888777766622222345566666555444433..333....36********************************87.888888875 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.7e-05     0.023     117     235 ..     158     276 ..     134     296 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.7e-05
    TIGR02006 117 fevtylevkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvG.kvpidle..elkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGher 235
                   +  y+e++e   idle+l+a +         +++    G i ++ +i +lc e+ v++  d a s+G k + +    + ++  +s  ++k+    G G++++ + p v  +a +  G  er
  MMETSP1174-20130828|38136_1 158 GSAVYVETEEGFRIDLEDLEAKMVSSGS--KYLMLSHMRGRIAHMDKIVKLCEEHGVYLIEDCAHSIGvKWNGKHTghHGRIAAISSQSYKML-NSGEGGFFLTNDPVVGAKAAVYAGAYER 276
                  45679999888899*****999987653..33444556799**************************94444333311445666666677776.5799********************9999 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05     0.021     120     188 ..     157     223 ..      90     247 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.1e-05
    TIGR02539 120 tgspeykvkleeykevieevedes.gkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvG 188
                  +gs  y  + e+++  +e++e +   +  +  +l+h+    G +a  +k++k+c+++gv l+ +ca+++G
  MMETSP1174-20130828|38136_1 157 KGSAVYVETEEGFRIDLEDLEAKMvSSGSKYLMLSHMR---GRIAHMDKIVKLCEEHGVYLIEDCAHSIG 223
                  34555666667788888888777513446677888875...7899999********************99 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-05      0.03      90     200 ..     138     246 ..      84     261 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.3e-05
    TIGR03235  90 hiitsaiehkavlepikfLeenGftvtylevdesGridveelkeair...edtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiav.dlsakr..idlisvsghk 200
                   ++t a    av  +i++  ++G  v y+e++e  rid+e+l+ ++     + l+ s m      G +  + +i +++ee++v+l  D a ++g + + + + ++  i  is  ++k
  MMETSP1174-20130828|38136_1 138 KVMTNAFTFTAVPSAIEH--AKGSAV-YVETEEGFRIDLEDLEAKMVssgSKYLMLSHM-----RGRIAHMDKIVKLCEEHGVYLIEDCAHSIGVKWNgKHTGHHgrIAAISSQSYK 246
                  466666666666555555..345444.789999999*****998776222333444444.....599*************************9965430333222236666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1556.08
//
Query:       MMETSP1174-20130828|38196_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    5.1  10.7          3    5.0   7.4    1.0  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.4   0.00072         3     150     210 ..       5      63 ..       3      64 .] 0.86

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00072
    TIGR00570 150 alelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldvaeliaehkeksvklek 210
                   l lek   e+++ +  k eee+kk+ + +kq  l +Let++ + ++ +ae+ +k ++ ek
  MMETSP1174-20130828|38196_1   5 HLALEKALAEQHKNHGAKTEEEKKKEIEMKKQ--LSDLETTHEEKEKALAEYDAKYEENEK 63 
                  67899*************99998877776665..899***************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       504  (0.122867); expected 82.0 (0.02)
Passed bias filter:                      298  (0.0726475); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|38212_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 828.89
//
Query:       MMETSP1174-20130828|38211_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1101.28
//
Query:       MMETSP1174-20130828|38226_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   13.7  10.8      0.024   13.3   7.5    1.3  1  TIGR03954 integ_memb_HG: integral membrane protein
        2.5    3.5  10.7        2.7    3.3   7.4    1.0  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase


Domain annotation for each model (and alignments):
>> TIGR03954  integ_memb_HG: integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   7.5   1.1e-05     0.024       8      66 ..      11      69 ..       2      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.1e-05
    TIGR03954  8 egvslllLlfvamplkylagipeavkivgmiHGvlFvlYlvvaldlalkarWslkklll 66
                  +++ l+L+ +am++  ++  p++v++++m+   + +l+lv+++ ++++  Ws+ ++ +
  MMETSP1174-20130828|38226_1 11 PSMVMLFLVAMAMVVTSMFTPPSVVAMLSMVMTSMVILFLVAMAMVMSRFCWSFLRMSM 69
                 56778899999*******************************************98865 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   7.4    0.0013       2.7     919     996 ..       3      78 ..       1      86 [. 0.69

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0013
    TIGR01652 919 vwmldglyqslvifllallvlkleavvssGevedllslgvivftalvvvvnlkialeierwnkisl.iaiagsilvvli 996
                  v ml+ ++ s+v+++l+ +++  + + +  +v   + + ++v+t++v+  ++ +a+ + r+ +  l +++ + +l+v i
  MMETSP1174-20130828|38226_1   3 VAMLSMFMPSMVMLFLVAMAMVVTSMFTPPSV---VAMLSMVMTSMVILFLVAMAMVMSRFCWSFLrMSMPVGVLFVAI 78 
                  56899999999988877777666555444455...47788899999999999****99999885331334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       460  (0.11214); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.75
# Mc/sec: 154.87
//
Query:       MMETSP1174-20130828|38254_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.63
# Mc/sec: 618.04
//
Query:       MMETSP1174-20130828|38260_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1174-20130828|38332_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.2e-161  533.6   0.1   7.6e-161  533.3   0.0    1.0  1  TIGR01060 eno: phosphopyruvate hydratase
      5e-06   23.6   0.0    8.2e-06   22.9   0.0    1.2  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
     0.0002   18.3   0.0     0.0071   13.2   0.0    2.1  2  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases
     0.0002   18.3   0.1     0.0035   14.2   0.1    2.2  2  TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.3   0.0  7.4e-164  7.6e-161       1     419 [.      46     473 ..      46     478 .. 0.96

  Alignments for each domain:
  == domain 1    score: 533.3 bits;  conditional E-value: 7.4e-164
    TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek........sltseelieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagk 419
                  i+ ++are+ldsrGnPtvev+ ++e gt+  a vPsGastG  ea elrd+  +ry+gkG lkav+nvn++iap l+G d + q+e+dq++i+ dgt+nksklGanail+vsla+aka a+a+++plyr++++       lv+P+P  n+inGG+ha n+l +qe++++P ga+++ ea+++g+ev+h+l k++k+k    at +GdeGGfaP  + ++ a+e+++eai kagy  +++v++ ldvaasef  ++++ y l+ ++         +++ + l e++eel + +piv ied+++e+dw +++++t ++G+k q+vGddl vtn+ ++++ +e++++n++l+k+nqiG++te+++avklak++g+ ++ shrsGeted+ iadlav+l +gqiktG+  rser++kynqLlrieeel+ e++yag+
  MMETSP1174-20130828|38332_1  46 ITGIKAREILDSRGNPTVEVDLSTELGTF-TASVPSGASTGAYEAYELRDGG-SRYMGKGCLKAVSNVNDIIAPMLMGKDPTAQSELDQMMIDADGTDNKSKLGANAILGVSLALAKAGAAAKGVPLYRHFADLAgndqPLVMPTPCFNVINGGSHAGNRLAFQEYFVIPTGAKDFAEAMQIGCEVYHNLAKVIKAKYggDATLIGDEGGFAPPCD-QRSAVELIMEAIGKAGY--ENEVTIGLDVAASEFKVKGTDDYDLDFKSSgdakdaslTISGKALGEFYEELANDFPIVTIEDPFDEDDWAAWSTFTGKVGSKFQVVGDDLTVTNPIKITRAVEEKACNCLLLKVNQIGSITESINAVKLAKQNGWGVMTSHRSGETEDSYIADLAVGLCTGQIKTGAPCRSERLSKYNQLLRIEEELAGESTYAGM 473
                  6789***********************88.599******************9.9***************************************************************************9876654444899******************************************************976699*************9.899**************..789********************99988877888887777888999****************************************************************************************************************************************************996 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     8e-09   8.2e-06     198     279 ..     331     415 ..     324     419 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 8e-09
    TIGR01928 198 rydllyiEePfkadDlselkelkkellt...piclDEsitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                  +  ++ iE+Pf+ dD    +  + ++ +    +  D  +t+  ++ +++e +a++ + +K+  +G +te+ +++ l+k++g +v+
  MMETSP1174-20130828|38332_1 331 DFPIVTIEDPFDEDDWAAWSTFTGKVGSkfqVVGDDLTVTNPIKITRAVEEKACNCLLLKVNQIGSITESINAVKLAKQNGWGVM 415
                  567899****************9988551114566789******************************************99886 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.0    0.0097       9.9      50     120 ..      95     171 ..      85     180 .. 0.76
   2 !   13.2   0.0     7e-06    0.0071     214     290 ..     333     412 ..     322     442 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0097
    TIGR02534  50 GGlayGeesvesikvlidtylaPvlvgrkate...iaailadlekvvagnrfakaa...vevalldaqakrlgvPvs 120
                  GG  y +        +++  +aP+l+g++ t    + +++ d +   ++++    a   v  al  a a   gvP+ 
  MMETSP1174-20130828|38332_1  95 GGSRYMGKGCLKAVSNVNDIIAPMLMGKDPTAqseLDQMMIDADGTDNKSKLGANAilgVSLALAKAGAAAKGVPLY 171
                  666666665555567999*********98543234999*****9999999986655233578999999999999986 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 7e-06
    TIGR02534 214 gvelieqPtaaedlealarltarl..evpimade.avtgPedalelakksaadvialkiaksGGlleakevaaiakaagi 290
                   +  ie P   +d +a   +t ++  +  ++ d+ +vt P +  + ++++a + + lk+++ G ++e+ + +++ak  g 
  MMETSP1174-20130828|38332_1 333 PIVTIEDPFDEDDWAAWSTFTGKVgsKFQVVGDDlTVTNPIKITRAVEEKACNCLLLKVNQIGSITESINAVKLAKQNGW 412
                  57779999999999999999887633566676653899*************************************98875 PP

>> TIGR01502  B_methylAsp_ase: methylaspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.019        19      92     156 ..     111     178 ..      99     269 .. 0.81
   2 !   14.2   0.1   3.4e-06    0.0035     292     375 ..     354     438 ..     311     444 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.019
    TIGR01502  92 vekavaekligrdvarvkda.akvf..ekladernlhtairyGvsqallaaaakarkttmaevvadel 156
                  v+  +a+ l+g+d +   +    ++  +   ++ +l      Gvs al +a a+a+ + + +  ad  
  MMETSP1174-20130828|38332_1 111 VNDIIAPMLMGKDPTAQSELdQMMIdaDGTDNKSKLGANAILGVSLALAKAGAAAKGVPLYRHFADLA 178
                  677899999999988776653333311344444559988899**********9999887777666655 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3.4e-06
    TIGR01502 292 ddrGvaaeivadewcntv.edvklfvdakaadlvqiktPdvGgvaesaravlyckandvgayvGGtcnetdlsaeasvhvalatd 375
                   + G++ ++v d+   t    +   v+ ka++ + +k   +G+++es +av++ k n+ g        et+ s  a   v+l t+
  MMETSP1174-20130828|38332_1 354 GKVGSKFQVVGDDLTVTNpIKITRAVEEKACNCLLLKVNQIGSITESINAVKLAKQNGWGVMTSHRSGETEDSYIADLAVGLCTG 438
                  45688889999987665424678889*********************************************99998888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 1624.48
//
Query:       MMETSP1174-20130828|38392_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1174-20130828|38395_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1174-20130828|38431_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1174-20130828|38435_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 488.36
//
Query:       MMETSP1174-20130828|38492_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 827.93
//
Query:       MMETSP1174-20130828|38500_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 492.76
//
Query:       MMETSP1174-20130828|38502_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-85  283.6   0.0    2.1e-85  283.2   0.0    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
    7.9e-05   20.2   0.0    0.00013   19.5   0.0    1.3  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
    0.00093   15.4   0.0     0.0013   15.0   0.0    1.1  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2   0.0   1.5e-88   2.1e-85      12     191 ..      82     261 ..      73     262 .. 0.97

  Alignments for each domain:
  == domain 1    score: 283.2 bits;  conditional E-value: 1.5e-88
    TIGR00493  12 srgerafdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                  + g+   d+ srllk+ri+ll+++v+de an++vaqll+l+ edp+kdi+lyinspGGs++aG+aiyd+mq++  dvst+c+G aasmGafll aGa Gkr +lpnsrimihqplGGaqGqa+dieiqakeil +++ ln+ +ae +Gq++ekie+d +rdf+++ eea++yGlid v++
  MMETSP1174-20130828|38502_1  82 NVGDGQMDVISRLLKDRILLLGTQVNDECANVLVAQLLYLANEDPTKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAPGKRRSLPNSRIMIHQPLGGAQGQAADIEIQAKEILFVRACLNTFIAEYSGQTVEKIEEDCDRDFYMTPEEAVDYGLIDAVIE 261
                  6788899**************************************************************************************************************************************************************************986 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.7e-08   0.00013      22      84 ..     117     178 ..      98     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 9.7e-08
    TIGR00706  22 klekikddksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyialaa 84 
                  +l  + +++  k + l i+SPGG+v+a   iy++++ +       + +g+ a  G+++++++a
  MMETSP1174-20130828|38502_1 117 QLLYLANEDPTKDITLYINSPGGSVSAGMAIYDAMQYVPCDVS-TVCFGTAASMGAFLLGAGA 178
                  4555566677899***********************9995444.4567888888999988876 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.2e-07    0.0013     337     397 ..     115     172 ..     100     179 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.2e-07
    TIGR00705 337 vaallrkarsDddvkAvvLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgY 397
                  va+ll  a++D+  k + L +nspGGsv+A   i  +++ +        v  G+ A  G++
  MMETSP1174-20130828|38502_1 115 VAQLLYLANEDP-TKDITLYINSPGGSVSAGMAIYDAMQYVPCD--VSTVCFGTAASMGAF 172
                  677788888777.6********************9998876655..334555655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1110.26
//
Query:       MMETSP1174-20130828|38503_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 287.55
//
Query:       MMETSP1174-20130828|38498_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 971.06
//
Query:       MMETSP1174-20130828|38499_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   13.1   0.0     0.0083   12.6   0.0    1.3  1  TIGR03268 methan_mark_3: putative methanogenesis marker protein 3


Domain annotation for each model (and alignments):
>> TIGR03268  methan_mark_3: putative methanogenesis marker protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     2e-06    0.0083     251     303 ..      88     143 ..      81     169 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2e-06
    TIGR03268 251 niekRerGavtvRnsGvgeGr..vYi.yredrvsslsHnvvGrvkkGieLidiaee 303
                  ++ + +rG+v++ n+G ++ r   ++ y ++    +  ++vGrv  G e +d  e+
  MMETSP1174-20130828|38499_1  88 ELRHDRRGTVSMANKGSNTNRsqFFMtYSKQPHLNNKYTIVGRVIDGFETLDAMEK 143
                  566779**********9877632444255666667789************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 814.69
//
Query:       MMETSP1174-20130828|38497_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-181  600.2   0.0   8.9e-181  599.6   0.0    1.2  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    6.6e-60  200.9   0.1    1.4e-59  199.9   0.0    1.5  2  TIGR00462 genX: EF-P lysine aminoacylase GenX
    7.4e-44  148.2   0.0    1.8e-42  143.6   0.0    2.1  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
    5.3e-41  138.4   0.0    2.1e-27   93.5   0.0    2.3  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    9.5e-21   71.9   0.0    8.4e-15   52.3   0.0    2.2  2  TIGR00457 asnS: asparagine--tRNA ligase
    2.3e-07   28.2   2.0    0.00018   18.7   0.0    2.7  3  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
      0.004   14.3   0.3      0.004   14.3   0.2    2.3  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  599.6   0.0  1.5e-183  8.9e-181       3     494 ..      44     546 ..      42     548 .. 0.93

  Alignments for each domain:
  == domain 1    score: 599.6 bits;  conditional E-value: 1.5e-183
    TIGR00499   3 ndelqqrlekleelreegeepylnklertkeakelqeeyaklkneeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdklsedveelee.klldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykee....eldlkkpvkkitmleaikk.id.ketgislddlkdsetakalakklai........evaekslslgkilnklfeefvEetliqPtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpalre 494
                  + ++++r++ l++l  eg +py++k++ ++e  e  ++++ ++n  ++++e++ siaGRi ++R++gk+ F++l+++++k+q++ + +++ ++ +  +  ++l +GDi+gv+G++ k+k+gels++ ++++ll+ +++++P +  G+k+ E r+rkRylD+i+n++ r+ f++R++ii+++R +lder+flEvEtP++++i gGA+AkPF+t hn+l++d+++R+ApElyLK L++gG+++vyEigr+FRnEG+d+tHnpEFtt+E+Yqayady+dl+e+te++++ +vk+++g++kiky +e    e+d+++p+k+i+ml+ +k+ i+  + g+++   + ++  k+ ak++ +        e  +  +++++++++l+++++Ee +i+Ptfi+++P+++sPLAk++++ p+lteRFElF++ +E++nay+Eln p+ qr+rf +q+++ + gd+ea++ Dedf++a+ey lpptgG+G+GiDRl m+ltd++sir+vllFp++++
  MMETSP1174-20130828|38497_1  44 TAYFENRTKALAALSVEGLNPYPHKFHVKQELGEYVTAFSGMENG-KRDEETSSSIAGRISSIRQQGKLLFFDLNGDGTKVQVMTDAKTYGDEAAWSQIcSILRRGDILGVTGYPGKSKKGELSIFPKSMQLLSPCMHMIPRN--GIKNVEIRFRKRYLDMILNPDIRNIFKVRARIINYVRMYLDERNFLEVETPMMNTIHGGATAKPFKTIHNELKMDMFMRVAPELYLKTLVIGGMDRVYEIGRQFRNEGMDQTHNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKDITGDYKIKYTNEdgpiEIDFTPPWKRISMLDGLKEeISkRHPGVAIVMPEVADLGKECAKDTLValckaigvEP-KPPITVARLVDQLVGDYLEEICIHPTFIMDHPEVMSPLAKYHRDRPGLTERFELFVNKRELCNAYTELNNPVVQRQRFTQQASQGKDGDEEAMVKDEDFCTAMEYALPPTGGWGMGIDRLTMFLTDKDSIREVLLFPTMKP 546
                  67899**************************************99.5566999*************************************9988766651569**************************************85..99*******************************************************************************************************************************************************9988644558*************98875244455677776666677777777766653333331033.555****************************************************************************************************************************************97 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.0   2.3e-62   1.4e-59       2     304 .]     212     541 ..     211     541 .. 0.87
   2 ?   -3.0   0.1       1.4   8.5e+02     128     193 ..     715     782 ..     700     788 .. 0.51

  Alignments for each domain:
  == domain 1    score: 199.9 bits;  conditional E-value: 2.3e-62
    TIGR00462   2 kkrakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmLEwYrvgadleelmeeveellqevle...................deeaeverlsyaeaf.....erylgidpltasleelkeaaekag.....eaaseeedredlldlllvekvepklgke..rptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                  k ra++++ +R +++er++lEvetp++++  +  ++ +++kt    +++ k +++++  PE+++K L+  g  +++++++ fRne + ++HnpEFt  E+Y++ ad+++lme +e++++ +++                   d + +++r+s+ + +     +r+ g+ ++  + ++l + ++k +     +a+  e +   ++ +l+ + v   l++   +ptf++d+P+ ++ La+ ++d +++ eRfEl+++  El+N+++EL++++ qr+Rf+++ ++ k+  +e +  de++ +a+e  lp++ G  +G+DRL m++++++si+evl f
  MMETSP1174-20130828|38497_1 212 KVRARIINYVRMYLDERNFLEVETPMMNTIHGG-ATAKPFKTI---HNELKMDMFMRVAPELYLKTLVIGGMDRVYEIGRQFRNEGMDQTHNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKditgdykikytnedgpieiDFTPPWKRISMLDGLkeeisKRHPGVAIVMPEVADLGKECAKDTlvalcKAIGVEPKPPITVARLVDQLVGDYLEEIciHPTFIMDHPEVMSPLAKYHRDRPGLTERFELFVNKRELCNAYTELNNPVVQRQRFTQQASQGKDGDEEAMVKDEDFCTAMEYALPPTGGWGMGIDRLTMFLTDKDSIREVLLF 541
                  569************************988765.566899988...467899******************************************************************************************888888888876555111114555566655577777666666555665555556666666677777777777777644479************************************************************************************************************986 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.4
    TIGR00462 128 aeverlsyaeaferylgidp..ltasleelkeaaekag.eaaseeedredlldlllvekvepklgkerp 193
                  +++++ s++e +e+  +  +  l++++++ ++++ + + +  ++++d ++l+ +l ++ v+  l+ ++ 
  MMETSP1174-20130828|38497_1 715 EKPKEKSMKEKLEEKKQAALdrLAKKEAKQRSLC-TLEiKPWESDQDLNKLFAKLKTDVVQDGLKWSEK 782
                  4455555555554443333310332333322333.3333555666677777777777777776665555 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.0   3.1e-45   1.8e-42      15     421 ..      96     543 ..      86     546 .. 0.78

  Alignments for each domain:
  == domain 1    score: 143.6 bits;  conditional E-value: 3.1e-45
    TIGR00458  15 vllrgwvheirdlGalifvllrdregliqilvkkkkv.skelfklikk.lkkesvvavkGkvkekekapqgleiipeklevlneakeplPldleekveaeldtrldarfldl.rrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeity..fereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkkelevlevklevp.eeklerltydeai..eilrak.Gkei..kdgedlsteaek..llG............................ekmdglyfitdfPteikPfytmPdednPeisksfdllyrdleissGaqrihdydllvekika...kGlePe.....slksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPr 421
                    + g++ +ir++G+l+f  l    + +q++  +k   ++   ++i + l++ +++ v+G   +++k  ++l i+p++++ l+ + + +P +  +    +++ r+ +r+ld+  +p ++ ifk+r+++++ vr +l e++f+ev+tP + +      ++ f+  +  ++ + f+  +P ly + l+  g++rvyei+  fr e  +   h  e+++ +   a++d  d +++ e+++  +++d++  +k ++  ++  +e+    + +r+   +++  ei +++ G+ i  ++  dl +e  k  l+                             e+     fi+d+P  + P+      d+P  ++ f+l++++ e+      + +  +  ++  +   +G + +       ++++ a++y +PP  GwG+G++rl+m+l+d++ ire+ lfP 
  MMETSP1174-20130828|38497_1  96 SSIAGRISSIRQQGKLLFFDLNGDGTKVQVMTDAKTYgDEAAWSQICSiLRRGDILGVTGYPGKSKK--GELSIFPKSMQLLSPCMHMIPRNGIK----NVEIRFRKRYLDMiLNPDIRNIFKVRARIINYVRMYLDERNFLEVETPMMNTIHGGATAKPFKTIHneLKMDMFMRVAPELYLKTLVIGGMDRVYEIGRQFRNEGMDQ-THNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKDITGDYKIKYTNEDGPIEIDfTPPWKRISMLDGLkeEISKRHpGVAIvmPEVADLGKECAKdtLVAlckaigvepkppitvarlvdqlvgdyleEICIHPTFIMDHPEVMSPLAKYHR-DRPGLTERFELFVNKRELCNAYTELNNPVVQRQRFTQqasQGKDGDeeamvKDEDFCTAMEYALPPTGGWGMGIDRLTMFLTDKDSIREVLLFPT 543
                  5689*******************************984445566765527999*******9877665..78**************9999987665....5678999*****73589*******************************8765544444556765542256789******************************99985.699*********************************9999987776666666541335666666555422344332255541144557766654322111333333777777777777744444444333334459**********988776.9******************999998887777777655111455554554333478***************************************5 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   3.6e-30   2.1e-27      20     262 ..      97     334 ..      84     344 .. 0.82
   2 !   42.3   0.0   1.2e-14     7e-12     447     569 ..     428     553 ..     421     563 .. 0.78

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 3.6e-30
    TIGR00459  20 tlaGWverrkdlGeliFidlrDkegivqvvsdkk.....kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnkskkkPleiekkeaeee..vrlkyRYLdL.RrpkmqqrlklRskvtkavRnflddkgFleietPiLtka.tPeGardyL.vPsRvkkgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkk 262
                   +aG ++ +++ G+l F dl      vqv++d k     ++  ++ + lr+ d++ v+g            + + ge+ +  +++++l+    + +++  ++ +++  +r + RYLd+  +p + +++k R+++++ vR +ld+++Fle+etP++        a+ +  +   +k + f  +  +P l+ + L+++G+d+ y i r fR+e + +   Peft  ++  ++++  d+me++e+++s++ k++++
  MMETSP1174-20130828|38497_1  97 SIAGRISSIRQQGKLLFFDLNGDGTKVQVMTDAKtygdeAAWSQICSILRRGDILGVTGYP---------GKSKKGELSIFPKSMQLLS----PCMHMIPRNGIKNveIRFRKRYLDMiLNPDIRNIFKVRARIINYVRMYLDERNFLEVETPMMNTIhGGATAKPFKtIHNELKMDMF--MRVAPELYLKTLVIGGMDRVYEIGRQFRNEGMDQTHNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKDITG 334
                  689******************9999******998775422234678899********9987.........2345699***********9....334444333333323789999***7369*********************************9654134456777524555556666..5678***************************************************************99876 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 1.2e-14
    TIGR00459 447 ahhpFtspkeedleklekapee..alaeayDlvlnGvelGgGsiRihdkelqekvfe...ilgid.eeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPktakaaellteaPs 569
                   h  F + ++e ++ l k + +   l+e+++l +n  el    + ++++ +q++ f+   + g d +eea  k   +  a+ey  Pp +G ++G+DRl+m+l+++dsiR+v+ FP  +    + t aPs
  MMETSP1174-20130828|38497_1 428 IHPTFIMDHPEVMSPLAKYHRDrpGLTERFELFVNKRELCNAYTELNNPVVQRQRFTqqaSQGKDgDEEAMVKDEDFCTAMEYALPPTGGWGMGIDRLTMFLTDKDSIREVLLFPTMK---PVNTAAPS 553
                  6888999999988888876655225889************************999983222233324556667777889************************************654...23444444 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.4e-17   8.4e-15      13     269 ..      90     337 ..      80     351 .. 0.80
   2 !   17.3   0.0   6.3e-07   0.00037     415     449 ..     510     544 ..     498     550 .. 0.89

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.4e-17
    TIGR00457  13 kavdeevkvsgWvktkRsskkiaFlelr.DGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyp.lqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEalal.alskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeak 269
                  +  + + ++ g + ++R ++k+ F +l+ DG+ ++ +    +  +e +  q  + l+ g  + v+g     ++kk el +  k++++++    +  p + +k+ +++f +    + l    +  + kvR+ +++ ++ y ++++f++v+tP++ +     +++ Fk+         +    + ++ v+  l+l +l++  +++vy +g  FR E  + + H  Ef+  E   a+++  dl++++e++i+ ++k +  + k
  MMETSP1174-20130828|38497_1  90 RDEETSSSIAGRISSIRQQGKLLFFDLNgDGTKVQVMTDAKTYGDEAAWSQICSILRRGDILGVTGYP--GKSKKGELSIFPKSMQLLSPCM-HMIPrNGIKNVEIRFRKRYLDMIL-NPDIRNIFKVRARIINYVRMYLDERNFLEVETPMMNTIHGGATAKPFKTIH-------NELKMDMFMRVAPELYLKTLVIgGMDRVYEIGRQFRNEGMD-QTHNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKDITGDYK 337
                  5556667899*****************87999666655555555677778888888999988888863..3344556666668*******99.555514466677776554444443.456899*****************************9888877888888773.......3356788999*******9987637*************9877.67*********************************9987755 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 6.3e-07
    TIGR00457 415 yGsvphsGfGlGleRlvayltglenirdaipfpRt 449
                  y   p +G+G+G++Rl  +lt+   ir++ +fp +
  MMETSP1174-20130828|38497_1 510 YALPPTGGWGMGIDRLTMFLTDKDSIREVLLFPTM 544
                  666799**************************976 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     3e-07   0.00018     182     239 ..     281     340 ..     273     346 .. 0.72
   2 !    8.1   0.0   0.00053      0.31     290     311 ..     517     538 ..     507     542 .. 0.90
   3 ?   -2.7   0.4         1   5.8e+02      10      64 ..     735     793 ..     712     815 .. 0.51

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3e-07
    TIGR00468 182 rifsigrvfRrdavdatHlpeFhQveglvvdknvslknLkgllee....flkklfgetevrf 239
                  r+  igr fR++ +d+tH peF+ +e+  +  +   ++L+ + e+    ++k + g+ ++++
  MMETSP1174-20130828|38497_1 281 RVYEIGRQFRNEGMDQTHNPEFTTCEFYQAYAD--YTDLMEMTEQmisgMVKDITGDYKIKY 340
                  78889*********************9866554..445555555500005555555555555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00053
    TIGR00468 290 afGlgieRlamlkygikdiRdl 311
                  ++G+gi+Rl+m   + + iR+ 
  MMETSP1174-20130828|38497_1 517 GWGMGIDRLTMFLTDKDSIREV 538
                  7**************9999986 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1
    TIGR00468  10 kkvkkeeekekliklikevk.....eeleeeltklkkellkaeaekklkfrkydvklpak 64 
                   ++ k+e k++    + e+k     + l++ ++klk+++ + +++ + k    dv    k
  MMETSP1174-20130828|38497_1 735 DRLAKKEAKQRS-LCTLEIKpwesdQDLNKLFAKLKTDVVQDGLKWSEKCALKDVAFGIK 793
                  223333322221.12222223344466666666666666666665555555555555555 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   6.9e-06     0.004      36     165 ..     222     339 ..     187     344 .. 0.67
   2 ?   -3.6   0.0       2.1   1.2e+03     207     227 ..     517     537 ..     514     538 .. 0.84
   3 ?   -3.6   0.4       2.1   1.2e+03       4      32 ..     722     751 ..     720     762 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.9e-06
    TIGR02367  36 akalvdrGfvevkspiliskellekmtideddelfkqvfr.vdekkclrpmlapnlynllrkldrllekpirifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevleelGideyele 165
                    +l +r f+ev++p++ + +       +   + fk +   ++ ++ +r  +ap ly  l+ l  ++    r++eiG  +r e   + h  eft  ++ +  +      e  e++i+ +++++   +y+++
  MMETSP1174-20130828|38497_1 222 RMYLDERNFLEVETPMMNTIHG------GATAKPFKTIHNeLKMDMFMR--VAPELY--LKTL--VIGGMDRVYEIGRQFRNEGMDQTHNPEFTTCEFYQAYADYTDLMEMTEQMISGMVKDITG-DYKIK 339
                  4556677777777777654432......222223333332123333333..688887..5555..4556669***************************99998888888888888887777665.67765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.1
    TIGR02367 207 GlGfGlerllkvredtknvrs 227
                  G G+G++rl +   d + +r+
  MMETSP1174-20130828|38497_1 517 GWGMGIDRLTMFLTDKDSIRE 537
                  889*******99999888875 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.1
    TIGR02367   4 lekellsrrkkdleklre.eekrdallkle 32 
                  ++++l ++++  l++l + e k+  l+ le
  MMETSP1174-20130828|38497_1 722 MKEKLEEKKQAALDRLAKkEAKQRSLCTLE 751
                  566777888889999965155777899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.17s 00:00:00.87 Elapsed: 00:00:00.61
# Mc/sec: 1804.57
//
Query:       MMETSP1174-20130828|38505_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-96  319.4   0.0      4e-95  316.8   0.0    2.1  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
    2.4e-72  241.8   0.0      1e-39  134.3   0.0    2.8  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    1.1e-70  236.0   0.0    1.6e-69  232.2   0.0    2.4  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
      1e-66  223.0   0.0      7e-66  220.3   0.0    2.1  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    8.6e-63  210.1   0.0    3.5e-62  208.1   0.0    1.9  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    1.2e-54  183.3   0.0    6.9e-54  180.8   0.0    2.1  1  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    0.00093   16.0   0.0      0.017   11.8   0.0    2.0  2  TIGR01141 hisC: histidinol-phosphate transaminase
     0.0093   12.7   0.0      0.019   11.7   0.0    1.4  1  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.8   0.0   7.7e-98     4e-95       3     389 ..      80     516 ..      78     518 .. 0.84

  Alignments for each domain:
  == domain 1    score: 316.8 bits;  conditional E-value: 7.7e-98
    TIGR01328   3 tfetraihagykpkdefgaltppiyqtstfvfesaeqGGnrfa......GeeeGyvysrlgnptvdllerriaelegae.......aavatasGmgaiaatllsllkagdevisdetlyGctfalledaltkfgidvkfvdm...aspeevkaaikdntkivyfetpanptlklidleavvrvakek.............g.vk..vivdntfatplltrpval.GvdvvvhsatkyigGhgdvvaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaa..............kqmkkgGgllafelkg.gead...aakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqale 389
                  +f+t++    +++      l pp+y  stf +++a++G            +e+G+vysr g pt +    +ia leg +        ++ + sGm+ai++ l+++lkagd+ +   t+yG t+ ++++   ++gi+v+fvd    + pe+ kaa+++ntk+vy etpanpt +l dl  v++v  e+             + v+  ++ d tfatp+ +r +++ G+dv +hsatky+gGh+d++aG ++   e + +     +k +t   + p d+fl+ rGl+tl vrm+r+ ena kva++l+ehp v + +ypGl++h+dr +a               +  ++ Gg++af+  g g+++   a ++ +rl++i+lavslG++e+l +hpasmth+++p+e+r + G+ +glvr+svGle+++d++ dlk al+
  MMETSP1174-20130828|38505_1  80 SFATKCASLYHPQPGAERGLAPPVYFGSTFLLDDANHGARLHEkreapyTDEDGFVYSRWGAPTNEAAALQIAALEGVDdterglgQCLLFNSGMSAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDAcgpEGPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVTERygpaldtpgtdphDrVRpwIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCSKVQKLITV-PLNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVAQTFYPGLDSHPDRGMADgifnsgrdegdeddNTKQTYGGMIAFITIGeGQEAlrrARNVCERLRVINLAVSLGGVESLCEHPASMTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNALD 516
                  6788888877777788889******************9865541111225789***********************86522244435999***************************************************833345789***************************99988876542222222222111122244899**************989****************************998888888899988.89*****************************************************9986222222222221112334569*****96552444422267899****************************************************************98 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.0     2e-42     1e-39      16     219 ..      95     331 ..      80     349 .. 0.85
   2 !  104.6   0.0     2e-33     1e-30     269     417 ..     350     515 ..     339     516 .. 0.83

  Alignments for each domain:
  == domain 1    score: 134.3 bits;  conditional E-value: 2e-42
    TIGR01326  16 ttksravPiyattsyvfdsaehaaalfgLeel......GniYsrlmnPttdvlekriaaleg......Gv.aalavasGqaaillallnlaeaGdnivsssklYGGtynlfkvtlkrlGievrfvdk..dd.leelekaidentkavfletignPkldvlDiekvaevakka..............gvp..livDntvatpylvrPleh.GadivvhsatkylgGhgtaigGvivds 219
                  +++  a P+y  +++  d+a+h+a+l + +e+      G +Ysr   Pt+++   +iaaleg      G  + l + sG++ai+ al+++ +aGd+ v   ++YGGt++ fk    + Giev+fvd   ++ +e++++a++entk+v++et +nP+++++D+  va+v  +                v   +++D t+atpy  r l+  G+d+ +hsatkylgGh+  ++G ++ +
  MMETSP1174-20130828|38505_1  95 AERGLAPPVYFGSTFLLDDANHGARLHEKREApytdedGFVYSRWGAPTNEAAALQIAALEGvddterGLgQCLLFNSGMSAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDAcgPEgPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVTERygpaldtpgtdphdRVRpwIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSR 331
                  4567789********************9876434444499********************984444444325699***************************************************7333459***********************************9887677776666666553323489**************976**********************99865 PP

  == domain 2    score: 104.6 bits;  conditional E-value: 2e-33
    TIGR01326 269 lsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkkvnypgLasssehelakkyl.............ekgagavlsf.evkggkea...akkfidalkLasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                  l+P+++fll++Gl tL +r++rh ena+kva+ L++hp v++  ypgL+s+++  +a+  +             ++ +g++++f  + +g+ea   a+++++ l++++ ++ +g + sl  hPas th+ +  e++++ G+  +l+r+svG+e+++D+++Dl++al
  MMETSP1174-20130828|38505_1 350 LNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVAQTFYPGLDSHPDRGMADGIFnsgrdegdeddntKQTYGGMIAFiTIGEGQEAlrrARNVCERLRVINLAVSLGGVESLCEHPASMTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNAL 515
                  79**************************************************988776443111111111111145689999994455566652225569****************************************************************98 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   0.0     3e-72   1.6e-69      21     380 .]     103     515 ..      94     515 .. 0.82

  Alignments for each domain:
  == domain 1    score: 232.2 bits;  conditional E-value: 3e-72
    TIGR01325  21 lyltssyvydsaaeaekrfag......evkgfvysryanPtvkvfeerlalleGae.......aavatasGmaailaallallsaGdhvvasrslfGstvvlvseilkrfGvevsfvda...tdlkaWeaalkantkllfletPsnPlaelvdiaalaela........havGak........lvvdnvfatPvlqqplkl.GadvvvysatkaidGqGrvlGGvilgsee.lieevakllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaela...............krqqsGgGtvvafdlkg....reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkral 380
                  +y  s+++ d a++ ++   +      + +gfvysr++ Pt ++   ++a+leG +       +++   sGm+ai++al+a+l+aGdh v   +++G t  +++e+   +G+evsfvda   + +++++aal+ ntk+++ etP+nP   l+d+  +a++          + G+         ++ d +fatP  q+ l+  G+dv+++satk++ G+  +l G + ++ e ++++  k+ +     l p+++++l +Gl tl++r+q++ ++a+k+a +l+e+p v + +y+gl +hP+  +a                 +q+ gG++  + + +      +a +v + l++++ +  lG + sl  hPa+ th  ++ e+r++ g+ dglvr+svGle+ +dl++dlk+al
  MMETSP1174-20130828|38505_1 103 VYFGSTFLLDDANHGARLHEKreapytDEDGFVYSRWGAPTNEAAALQIAALEGVDdterglgQCLLFNSGMSAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDAcgpEGPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVterygpalDTPGTDphdrvrpwIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSRSEpFLHGCSKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVAQTFYPGLDSHPDRGMAdgifnsgrdegdeddNTKQTYGGMIAFITIGEgqeaLRRARNVCERLRVINLAVSLGGVESLCEHPASMTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNAL 515
                  788999999999998877765222222468***********************9863333333678889************************************************9722256789***************************99998752221111211222122222333899*************976***********************9998772456699999**********************************************************99887333333322222221223444454444445435444457889****************************************************************997 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.3   0.0   1.4e-68     7e-66      40     380 ..     131     516 ..     122     518 .. 0.83

  Alignments for each domain:
  == domain 1    score: 220.3 bits;  conditional E-value: 1.4e-68
    TIGR02080  40 praydysrsgnPtrdllekalaelekGad.......avvtssGmsaiellviallkpddllvaPhdcyGGtyrllkalakkgklkvqlvdqsd...eealekalaekpklvlietPsnPllrvvdiaklcklaka.............agav...vvvdntflsPilqkPlal.GadlvlhsatkylnGhsdviaGaviakdkqlaeelawwanalGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaa..............kqqkGfGallsfelkGgee.ev...kkflkklklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqala 380
                     + ysr g Pt +  +  +a le+ +d       +++ +sGmsai+  ++a+lk++d  v P+  yGGt+ ++k  a +  ++v +vd       e  ++al+e++k+v+ etP+nP  r++d+  ++++  +             ++ v   ++ d tf +P  q+ l + G d+ +hsatkyl Ghsd++aG v ++ +   +   +    + v   ++ds+ll rGlrtl +r++++ +na k++ +l+++p+v + +ypgl +h++  +a               + ++ +G +++f   G+ + ++   ++  ++l++  la slGGvesl  hpa+mth+ + +e r + G++d l+r+svGle+a+dl++dl++al 
  MMETSP1174-20130828|38505_1 131 EDGFVYSRWGAPTNEAAALQIAALEGVDDterglgqCLLFNSGMSAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDACGpegPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVTErygpaldtpgtdpHDRVrpwIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCSKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVAQTFYPGLDSHPDRGMADgifnsgrdegdeddNTKQTYGGMIAFITIGEGQeALrraRNVCERLRVINLAVSLGGVESLCEHPASMTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNALD 516
                  55688*********99888888777544311111126899**************************************************86511156899************************999998754311111111111111222222689*************9879*************************************************************************************************999853333332222222235678*******887654313411156899**************************************************************996 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.0   6.8e-65   3.5e-62      36     378 ..     131     515 ..      97     519 .. 0.81

  Alignments for each domain:
  == domain 1    score: 208.1 bits;  conditional E-value: 6.8e-65
    TIGR01329  36 dgeydysrsGnPtrtalesllakleka.......eralavssGmaal.dvivrllkagdeiiagddlyGGtdrlltqlksksgvvvvhvdttd...lekvkavlgdlpktklvllesPtnPlikivdirkiaeaakal..........nedal....vvvdntmlspllcnPlel.GadivlesatkylaGhsdvmaGvlavkseeiakklyflinseGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlk................sepdfklhksqakGaGavlsfet...Gs..valskrlveaaklfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaal 378
                  +  + ysr G Pt +a   ++a le +        + l + sGm+a+ ++++ +lkagd+ +    +yGGt+ +++ ++ + g+ v +vd       e+ ka+l+  ++tk+v+ e+P+nP ++++d++ +a+++ +           +++ +    ++ d t+ +p + + l++ G d++++satkyl Ghsd++aG ++++se   +    ++      l P+ds+ll rG++tl +r+++  ena ++a  l++++ va ++ y+Gl                 +e d +  +  ++  G +++f+t   G+  +++++++ e  ++ +++vs+G v+sl + P  ++h+ i+ e r   +l + lvr+svG+e+ +dl++dl++al
  MMETSP1174-20130828|38505_1 131 EDGFVYSRWGAPTNEAAALQIAALEGVddterglGQCLLFNSGMSAItSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDACGpegPENYKAALQ--ENTKVVYTETPANPTCRLTDLPGVAQVVTERygpaldtpgtDPHDRvrpwIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCSKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVA-QTFYPGLDshpdrgmadgifnsgrDEGDEDDNT--KQTYGGMIAFITigeGQeaLRRARNVCERLRVINLAVSLGGVESLCEHPASMTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNAL 515
                  22256********************99655433346799*******9356788*************************************986222679******..899***********************998752222221111111122233789***************************************************************************************************776.9*******7777777777777755333333333..3334555555554225433678899999999***********************************************************98 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0   1.3e-56   6.9e-54      15     374 ..      97     515 ..      90     518 .. 0.81

  Alignments for each domain:
  == domain 1    score: 180.8 bits;  conditional E-value: 1.3e-56
    TIGR01324  15 gsvnPpvqrastvllds..........daasarakdkltyGirGtsttvalqdalaeleGa.......agvilyPsGlaavtnallafvkaGdevlvvdsaykPtrrfcdivlkrlgveveyyd...PkigediaalikpntkvvfleaPasltlevqdiPaiakaar........aagv........vvlidntwaagllfkaleh.gvdisiqaatkylaGhsdvllGtvaanesavekll.ealyllGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghel....fk..rd......fs..GssGlfsvvlkrlsqkev...hafldalklfglgyswGGyeslaln....vqpelairrsikrdleGplirlhiGledvddlkadlkaGl 374
                  + + Ppv  +st lld+            a  +++d ++y + G +t+ a +  +a+leG         +++l+ sG++a+t+al+a++kaGd+ ++  ++y  t++f +      g+ev + d   P+  e+  a ++ ntkvv++e+Pa  t  + d+P +a++          ++g          ++ d t+a++   + l+  g+d+si++atkyl+Ghsd+l G+v++  + + +   +   l+ +  ++ d + ++rGlrtl vr++rh e+a+++a+ l+e++ va+ ++P l s+p+  +    f   rd       +     G+ +++  + +q++     +  + l++  l+ s GG esl       ++  +   + + + l+  l+r+ +Gle+ +dl  dlk+ l
  MMETSP1174-20130828|38505_1  97 RGLAPPVYFGSTFLLDDanhgarlhekREAPYTDEDGFVYSRWGAPTNEAAALQIAALEGVddterglGQCLLFNSGMSAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNWGIEVSFVDacgPEGPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVTerygpaldTPGTdphdrvrpWIMCDGTFATPYHQRVLDIpGIDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCsKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKVARMLDEHPMVAQTFYPGLDSHPDRGMadgiFNsgRDegdeddNTkqTYGGMIAFITIGEGQEALrraRNVCERLRVINLAVSLGGVESLCEHpasmTHTMIPREQRVSGGLHDGLVRISVGLEKAQDLVDDLKNAL 515
                  567899999****999888888877665666778899***************99****98622222224689**************************************************99555666699*******************************99865666666633322222323369***************9559***********************9988877665526677789999***************************************************98761111433343111111221123689998888888876511157899****************9753111023335577888999999*******************9987 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.4e-05     0.017      84     170 ..     176     264 ..     160     269 .. 0.80
   2 ?    1.8   0.0     0.038        19     310     340 ..     476     506 ..     470     513 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.4e-05
    TIGR01141  84 lielliraflepgdavlvleptys.mYevsakiagaevkevplked.gqedleavleaakekvklvflasPnnPtGnllkreeiekvle 170
                  +i+  ++a+l+ gd+++ +   y   +e   ++a    +ev++ +  g e  e+ ++a +e++k+v+  +P nPt  l +   + +v+ 
  MMETSP1174-20130828|38505_1 176 AITSALMAVLKAGDHAVLPYTVYGgTHEFFKEFAVNWGIEVSFVDAcGPEGPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQVVT 264
                  57778889999999999988888535666666666666666666666668999999999****************99999888888765 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.038
    TIGR01141 310 ekgiivRdlksaeglleeclRitvGtreene 340
                   + +i R+++   gl ++ +Ri+vG ++ ++
  MMETSP1174-20130828|38505_1 476 THTMIPREQRVSGGLHDGLVRISVGLEKAQD 506
                  5677889999999999*********987654 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.7e-05     0.019      77     167 ..     173     262 ..     157     269 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.7e-05
    TIGR03947  77 GsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaaerdfrp.dlddlralvtdrtrlvvvnfPhnPtGasvderelsel 167
                  G   ai  +l a+l+ Gd+ v+   +y   +e+ +   ++   + +++++ + p  +++ +a +++ t++v    P nPt +  d  + +++
  MMETSP1174-20130828|38505_1 173 GM-SAITSALMAVLKAGDHAVLPYTVYGGTHEFFKEFAVNW-GIEVSFVDACGPeGPENYKAALQENTKVVYTETPANPTCRLTDLPGVAQV 262
                  43.49999*************99999987777665555543.334444444444158999********************987776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.20s 00:00:00.81 Elapsed: 00:00:00.53
# Mc/sec: 1309.93
//
Query:       MMETSP1174-20130828|38509_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 601.28
//
Query:       MMETSP1174-20130828|38510_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1093.62
//
Query:       MMETSP1174-20130828|38511_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 723.30
//
Query:       MMETSP1174-20130828|38512_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1174-20130828|38513_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-05   18.4  34.8    7.6e-05   18.4  24.1    2.5  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   11.0  68.2     0.0043   12.6  29.1    2.3  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  28.2   1.2e-06    0.0025     236     478 ..     155     390 ..     128     405 .. 0.41
   2 !   18.4  24.1   3.7e-08   7.6e-05     262     511 ..     288     530 ..     275     539 .. 0.82
   3 !    5.3  24.8   0.00035      0.72     244     467 ..     352     574 ..     341     670 .. 0.41

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-06
    TIGR02168 236 elkeeleeleeelkeaeeeleeleaelkeleeeleelrleksel..eeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqa 478
                  + ++ ++  ++++++++ e+++le+e k+l+ ++e+++++ +     +++ e++++l + + e srl +++++++ +l+++++ +e + ++l+ l+s++++ +++ a+l+e l+e++     le+++      l    ++++ ++e+leelr e ++ + +l+ ++ e++r+e++  ++ e+++ + + +  +++kl+ ++++l   +++l+ +eee e l++e+++l e+  + e +l  +  +
  MMETSP1174-20130828|38513_1 155 QVDQLRSDPSKKAEKMKAEIATLEDEKKQLQMKIERFKKQTKDEpgFKAIYEATSKLRQQQDEDSRLCSNMRKQRLSLQHVQDRQEDAGRRLKALRSSQQNNSTAEAMLAELLNEVSV----LEQRARV---VLPRELEQERCKREKLEELRFEPKRSQTDLEMIQHEVQRYEEQCAKIREQVDDNMNAR--ADNKLTTFRQALLLASKKLAAKEEEVELLQHENRQLAEQIDSEETKLSDMGGN 390
                  1111111122233333333334444444444444433333222211233444444444444444444444444444444444444444444433333333333333333322222222....2222222...2223334444455556666666666666666666666666666666666655333333..33356666666666666666666666666666666666665555555444443 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.7e-08
    TIGR02168 262 lkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvk 511
                   + + e+leelr e ++ +++le +q+e+q+++++ +++ +++    +   +++++l    + l  + +k+  +eee++ l+ e  +l+e+++s+e +l+ +  ++ + +s+ +++   l+e+ +++++++ +l++l+ae   l ++ + l  r ++l +  ++le+k+       +++qe+le+   + ee+++ +++ e++lee+++ ++ ++++l++ +++la   ++l+ ++++ +++e+++++ k
  MMETSP1174-20130828|38513_1 288 ERCKREKLEELRFEPKRSQTDLEMIQHEVQRYEEQCAKIREQVDDNMNA--RADNKLTTFRQALLLASKKLAAKEEEVELLQHENRQLAEQIDSEETKLSDMGGNQYMTKSEFKNYGVVLREKTQRYRDHKTELKDLQAESVLLHRTEQILRGRDKNLGEFLTQLEAKKG--VLGYRATQEKLEK---ASEEAANLDANKEQTLEEISAIVKGIKTKLHERKNQLAPQIKQLREVRKVHNEVESEYNYKK 530
                  4556789999999999999999999999999999999999998876666..46899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888888854444..4445555555555...55555555556667777777789999999999999999999999999999999999876655 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.00035
    TIGR02168 244 leeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleel..keelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealee 467
                  ++++l+++eee+e l+ e ++l e+++  +++ s +  ++   ++e++++   +++++q+ + +k +l++l++e+  l+++ + l+ + ++l e l++le+++  l  ++  e+le++ eea++  ++ e++lee  + ++  +++++e ++qla + ++l+++++  +++e++ +  k +    +k +  +e e+++l++++ee+++e  e e++ + l+  l+ 
  MMETSP1174-20130828|38513_1 352 ASKKLAAKEEEVELLQHENRQLAEQIDSEETKLSDMGGNQYMTKSEFKNYGVVLREKTQRYRDHKTELKDLQAESVLLHRTEQILRGRDKNLGEFLTQLEAKKGVLgyRATQEKLEKASEEAANLDANKEQTLEEISAIVKGIKTKLHERKNQLAPQIKQLREVRKVHNEVESEYNYKKMSY---DKVAVGLEMERQQLEQKCEEHQKECLEEESRYHYLNCLLNL 574
                  34444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333444444444444444444444444444444444444444444444444444444444444444432222211...11122222333333333333333333333332222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  12.6    0.0012       2.4     394     507 ..     148     260 ..     129     276 .. 0.54
   2 ?   12.6  29.1   2.1e-06    0.0043     232     509 ..     284     565 ..     264     574 .. 0.70
   3 ?   11.7  21.6   3.8e-06    0.0077     699     931 ..     336     583 ..     333     641 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0012
    TIGR02169 394 kleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleel..aeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                  +  +++++ ++l+ + ++   +++++++e+a l+ e ++++ ki+ +++++++    ++i +a+ kl+q +++ + + +++rk++  l++++++++++ r l++l+ +++  ++++
  MMETSP1174-20130828|38513_1 148 QFIQAHKQVDQLRSDPSK---KAEKMKAEIATLEDEKKQLQMKIERFKKQTKDEpgFKAIYEATSKLRQQQDEDSRLCSNMRKQRLSLQHVQDRQEDAGRRLKALRSSQQNNSTAE 260
                  333333333333333333...34555555555555555555555555555554411356666666666666666666666666666666666666666666666666665544433 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.1e-06
    TIGR02169 232 elealekqkekiekelaeleeelekleeeieelekeleeiekk....leelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnel..kreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelael..eaqakaseeesre 509
                  ele+ + ++ek    l+el+ e + ++  +e +++e+++ e++    +e+++ ++++ ++++ +++++ l   + +++  e++++  ++e ++++e++   e +++ +  +    + e +++ +  ++ +++++++k+el++l+ae   +  + + lr + k+l e l +l+ ++  l  + ++++l   ++++ +  a+ ++ le+i + ++ ++++l+e +++++ + ++l+++++  +++e+e+  +k  ++k+   l+  +++l+++  e q++ +eeesr+
  MMETSP1174-20130828|38513_1 284 ELEQERCKREK----LEELRFEPKRSQTDLEMIQHEVQRYEEQcakiREQVDDNMNARADNKLTTFRQALLLASKKLAAKEEEVELLQHENRQLAEQIDSEETKLSDMGGNQYMTKSEFKNYGVVLREKTQRYRDHKTELKDLQAESVLLHRTEQILRGRDKNLGEFLTQLEAKKGVLgyRATQEKLEKASEEAANLDANKEQTLEEISAIVKGIKTKLHERKNQLAPQIKQLREVRKVHNEVESEYNYKKMSYDKVAVGLEMERQQLEQKceEHQKECLEEESRY 565
                  33333333333....44444444444444444444444444440000345556666667777777777777777777777777777777777777777777777777777777777788888888888888888888888888888888888899999999999999999999988762245566665555666666667788899999999999*****************************************999888888888875335666667777655 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 3.8e-06
    TIGR02169 699 rriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleael.seekieei.eeelekleeevsriear...l......eeiea...elnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeele.eleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakleale 931
                  +r++++l   +++l  a+kk+ ++e+e+e l++e+++l+e+++  e+kls +  +    k+e k++   + e++++  + k +l+dl+ae    ++ e+i + + ++l e + ++ea+   l      e++e+   e  +l+  +++ lee ++  +    +l+e+k++++ +i++l+  ++++++e+e e++++   +++   +L+ er++le++ +e +k+  e e++++  +  l+   a+l+  e
  MMETSP1174-20130828|38513_1 336 ARADNKLTTFRQALLLASKKLAAKEEEVELLQHENRQLAEQIDSEETKLSDMGGNQYMTKSEFKNYGVVLREKTQRYRDHKTELKDLQAESvLLHRTEQIlRGRDKNLGEFLTQLEAKkgvLgyratqEKLEKaseEAANLDaNKEQTLEEISAIVKGIKTKLHERKNQLAPQIKQLRE-VRKVHNEVEsEYNYKKMSYDKVAVGLEMERQQLEQKCEEHQKECLEEESRYHYLNCLLNLEGAALQRIE 583
                  56788888899999999999999999999999999999999999999999999999999999999999999999999999999999988642222222221222333333333332221111110000222220002222221222222222222333344555555666666666655.444443333256666677777777777777777777777777777777777766666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       396  (0.0965383); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.16s 00:00:00.97 Elapsed: 00:00:00.79
# Mc/sec: 1142.79
//
Query:       MMETSP1174-20130828|38514_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.73
# Mc/sec: 555.08
//
Query:       MMETSP1174-20130828|38515_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1292.89
//
Query:       MMETSP1174-20130828|38517_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-07   28.0   0.0    6.6e-07   27.1   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0066   13.8   0.0      0.012   12.9   0.0    1.4  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
  ------ inclusion threshold ------
      0.049   10.5   0.0      0.098    9.5   0.0    1.4  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   4.8e-10   6.6e-07       4     126 ..       3     128 ..       1     154 [. 0.65

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 4.8e-10
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisi..teskpgvtrdyvteqieedGktykvnllDTaGqedf.....dairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                  +k++++G++++GK+++ + +  ++ +   t   p++  +y +  ++  G +  + l+D +Gq+df     d++r++ +r ve ++ v+d+ +  ldv+ +  +   e  ++    g+ + + v K+Dl+ 
  MMETSP1174-20130828|38517_1   3 KKVLLMGKSGSGKTSMRSIIFADYLARdtTRLSPTIDVEYSS--VQFLG-NLHLHLWDCGGQDDFyknylDNMRDHIFRSVELLVYVFDVESDQLDVDLKQFEAVVEALDQHS-PGALVFVLVHKMDLVA 128
                  79*************988887777655114455688777777..56666.579********9998332234566666666666666666665555555444444444444443.4666777789999988 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.8e-06     0.012      37      63 ..       5      31 ..       2      41 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 8.8e-06
    TIGR02324 37 valsGksGaGkstllkslyanYlpesg 63
                 v l+GksG+Gk ++   ++a+Yl+  +
  MMETSP1174-20130828|38517_1  5 VLLMGKSGSGKTSMRSIIFADYLARDT 31
                 789*******************98765 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   7.2e-05     0.098     232     299 ..      75     140 ..      70     174 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 7.2e-05
    TIGR02729 232 Hiert.rvllhlidlseedekdpvedleviekeLkkysee.....Laekpelvvlnkidlleeeeleellkelk 299
                  Hi r+ ++l+++ d+++++ +  ++++e++ + L+++s+      L++k  lv+++  d+l         ++ +
  MMETSP1174-20130828|38517_1  75 HIFRSvELLVYVFDVESDQLDVDLKQFEAVVEALDQHSPGalvfvLVHKMDLVAAENRDALF--------NDRR 140
                  777753799*********99999***************964444455555555555555544........3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.27s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 1118.24
//
Query:       MMETSP1174-20130828|38519_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1174-20130828|38520_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 1768.65
//
Query:       MMETSP1174-20130828|38523_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1174-20130828|38521_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   19.5   0.2       0.51    8.6   0.0    2.5  2  TIGR02657 amicyanin: amicyanin


Domain annotation for each model (and alignments):
>> TIGR02657  amicyanin: amicyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00017       0.7      10      26 ..       9      25 ..       3      33 .. 0.77
   2 !    8.6   0.0   0.00013      0.51      11      28 ..      81      98 ..      76     114 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00017
    TIGR02657 10 tpelrvkvgdavtwinr 26
                 t   ++kvgd+vtw+  
  MMETSP1174-20130828|38521_1  9 TSSQELKVGDTVTWTAA 25
                 566789********975 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00013
    TIGR02657 11 pelrvkvgdavtwinrea 28
                  e r k gd+vtw+++++
  MMETSP1174-20130828|38521_1 81 QESRFKLGDTVTWTDTDT 98
                 58899*********9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1159.62
//
Query:       MMETSP1174-20130828|38518_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.9   0.1        4.7    5.0   0.0    2.5  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB


Domain annotation for each model (and alignments):
>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0011       4.7      29     128 ..      14     107 ..       8     120 .. 0.76
   2 ?    4.8   0.0    0.0013       5.2      10      58 ..     137     185 ..     135     222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
    TIGR01488  29 evkeltrlvlegrisfedrlgrrlkllerslleelakeflakevair..pgarelikwlkekGiklvivSggldflveklaeklgidkvfanelelddnGll 128
                   + el+++++++  ++++ ++  +++  r+ + +    ++  +++ +  p +++l+k  + +G   viv  g d++v +l+++       ++ l+++d+G+ 
  MMETSP1174-20130828|38518_1  14 AFTELEQTIMKQMEYYFSDENLPGDKFLRKHMGKDN--MVPLKLIVQsfPRMQRLLKVVNPEGGVGVIVAMGKDSFVAELLRRN------SSALKVSDDGKK 107
                  677889999988888888888887777777655555..44444444456********************************987......556666666655 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0013
    TIGR01488  10 Ltdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllers 58 
                  +t++d++ ++lk+ +g ++ev+ ++ + +++ +s++ r      +++ s
  MMETSP1174-20130828|38518_1 137 ITEKDFNLNVLKQKFGVCGEVITVRLQRQQSANSYVPRSAHVEYKDRAS 185
                  89********************999998888888887765544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1542.62
//
Query:       MMETSP1174-20130828|38522_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-208  689.2   0.0   6.2e-208  688.9   0.0    1.0  1  TIGR02731 phytoene_desat: phytoene desaturase
    7.5e-76  253.7   0.0    4.3e-75  251.3   0.0    1.8  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    6.4e-60  201.5   0.0    8.4e-60  201.1   0.0    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.1e-12   44.2   0.0    2.2e-11   40.9   0.0    2.1  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    2.2e-08   31.0   0.2    4.4e-08   30.1   0.0    1.5  2  TIGR02734 crtI_fam: phytoene desaturase
    6.3e-08   29.7   0.1    9.9e-08   29.1   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.7e-07   28.1   0.0    2.8e-07   27.3   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    1.4e-06   25.1   0.0    0.00018   18.1   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
      9e-06   22.1   0.0    1.4e-05   21.5   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.1e-05   22.3   0.0    1.8e-05   21.5   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.9e-05   21.7   0.5    2.9e-05   21.1   0.4    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    7.3e-05   18.2   0.0    0.00011   17.6   0.0    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00038   17.6   0.1     0.0018   15.4   0.1    2.1  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00062   16.6   0.0     0.0011   15.8   0.0    1.3  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0012   15.5   0.2      0.002   14.9   0.1    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0037   14.2   0.2     0.0061   13.5   0.2    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0052   13.5   0.2       0.11    9.1   0.1    2.1  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
      0.015   11.6   0.0      0.024   10.9   0.0    1.2  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
      0.043   10.7   0.0      0.064   10.1   0.0    1.2  1  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
      0.045   10.6   0.1       0.07    9.9   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  688.9   0.0    3e-210  6.2e-208       2     452 ..      79     534 ..      78     535 .. 0.98

  Alignments for each domain:
  == domain 1    score: 688.9 bits;  conditional E-value: 3e-210
    TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkpgelsrfdv.pdlpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlne.dgsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttvdhllfsrsellsvyadmsetckeyadpdksmlelvlapak.......dwigrsdeeiieatlkeleklfpdelkad.ekakllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqai 452
                  vai g+gl+gl++akyl++agh p v eardvlggkv+aw+dedgdw+etglhiffgaypn+++l+ el+i+drlqwk h +ifa+++ pge++ fd+ p +pap+n  lail n++mlt  ek++ a  llp +++gq++++++d+l+++++++k g+per+n+evfi+++kal+fidpd+ls+tvvlta+nrfl+e +g ++afldg+ p+rlc+p+  +i+sr g v ++ rlkeiv++e dgsvk++ + d++     +v ad yvsa++vdi+k  +p +w+++++f++ ++leg+pvin+h+wfd+kl  +dhl fsrs+llsvyadms tckey+d+++smlelv+ap +       +wi++sd+eii+at++el++lfp+e++ad +kakl+k++vvktprsvy a+pgr+k+rp+q+tpi+nf lagd+t qk+l+smegavl gklaa+ +
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFTELDIHDRLQWKIHKMIFAMQELPGEFTTFDFiPGIPAPFNFGLAILMNQKMLTLGEKLQTAPPLLPMLIEGQSFIDQQDELSVTQFMRKYGMPERINEEVFISMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCEPMKAFIESRDGSVVMKNRLKEIVVDEsDGSVKHLLMGDGS-----KVVADQYVSAMPVDIVKRYIPTKWQNMPYFRQFDELEGIPVINLHMWFDKKLIGMDHLCFSRSPLLSVYADMSRTCKEYYDEEQSMLELVFAPCSpiaggkvNWIAKSDQEIIDATMEELARLFPTEIAADgSKAKLRKYAVVKTPRSVYAAIPGRNKYRPSQETPIKNFVLAGDWTSQKFLGSMEGAVLGGKLAAEVV 534
                  89***********************************************************************************************7699******************************************************************************************************************************************998659*********999.....9********************************************************************************************7544444458*********************************************************************************************987 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.0   2.1e-77   4.3e-75       2     473 ..      79     534 ..      78     535 .. 0.92

  Alignments for each domain:
  == domain 1    score: 251.3 bits;  conditional E-value: 2.1e-77
    TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthlfvnkg..geikeldfrfavgapfn.glkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlkeaagldnllytadadfscfadlalaspedyykegqgsllqlvltpgdp.......flkksneeivkrvdkqvkelfps.....skelkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaai 473
                  vai+g gl+gla+a  l +agh   +ye+r  lggkv +w+d+dg+ ie glh+ffg+y n+++l+  +  +d+l+ k h  +f  +   ge  ++df   + apfn gl  ++  + l+l +kl+ a      p++  l++ +     i + d++s ++++++ g  e+  + ++  +a al fid +++s   +lt ++ f    +  ++ +l+g   + l +p++ ++e++ + + +++++kei +++s dg+  v +l + +++    + ad+yv+a  v  +k+ +p +w+++ +f + ++le++pv+ + + +d               k+  g+d l ++    +s +ad++ +  e yy e + s+l+lv++p  p       ++ ks++ei+  + +++ +lfp+       + kl  ++vvk ++s+y   pg++ +rp+q+tpi+nf lag +t q ++ smega l g++aa+++
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFTELDIHDRLQWKIHKMIFAMQElpGEFTTFDFIPGIPAPFNfGLAILMNQKMLTLGEKLQTA-----PPLLPMLIEGQ---SFIDQQDELSVTQFMRKYGMPERINEEVFISMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCEPMKAFIESRDGSVVMKNRLKEIVVDES-DGS--VKHLLMGDGS---KVVADQYVSAMPVDIVKRYIPTKWQNMPYFRQFDELEGIPVINLHMWFD---------------KKLIGMDHLCFSRSPLLSVYADMSRTCKE-YYDE-EQSMLELVFAPCSPiaggkvnWIAKSDQEIIDATMEELARLFPTeiaadGSKAKLRKYAVVKTPRSVYAAIPGRNKYRPSQETPIKNFVLAGDWTSQKFLGSMEGAVLGGKLAAEVV 534
                  9***********************************************************************************987444****************9899999999*********976.....67888888755...467889**********999999999**********************************************9999***************************776.665..6899998765...467******************************************9997...............4568********************99865.5554.4699*****9976555555559*********************733222356899***********************************************************986 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.0   4.1e-62   8.4e-60       1     429 [.      79     535 ..      79     536 .. 0.88

  Alignments for each domain:
  == domain 1    score: 201.1 bits;  conditional E-value: 4.1e-62
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql..erleltfldpegresrLrlsrl.paPlhlakg.llrakglsladklalarlllalkrerl...raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralve..aaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevklpaplvglvgglaqWlfdrgelagee.............gllavvvSaardledlereeladrivaelrrllpkv.....aeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                  v+++GgGl+GLa+A  L++aG + t++Ear  lGG++++ +d++ +  i  g H+  gay ++++l   ++ +drlq    +  +++ +  g++ +++  ++ paP+++  + l++ k l+l +kl++a  ll +  e      ++++ +v++ +++ g +er+ e+++  ++ +    dp++ s+ ++   + + +l++ +  ++ +   +  + + ep+ +++esr g+v ++ r++e+ +++    ++     +++++ ad++v A+p + +++ +p+      ++ + ++le  p++++h+++d+++   + ++    ++   ++++   + +e                +    ++ ++ + +++e++d+ ++el+rl+p++      +akl k  v+k+ r ++aa pg +  RP ++tp++n +LAGDwt+  +   +EgAv  G+ AAe v+
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEDGD-WIETGLHIFFGAYPNMMNLFTELDIHDRLQWkiHKMIFAMQELPGEFTTFDFIPGiPAPFNFGLAiLMNQKMLTLGEKLQTAPPLLPMLIEGQsfiDQQDELSVTQFMRKYGMPERINEEVFISMAKALDFIDPDKLSMTVVLTAMNR-FLNEDNGLQMAFLDGNQPDRLCEPMKAFIESRDGSVVMKNRLKEIVVDESDGSVKHLlmGDGSKVVADQYVSAMPVDIVKRYIPTkwqnMPYFRQFDELEGIPVINLHMWFDKKL-IGMDHLCFSRSPLLSVYADMSRTCKEyydeeqsmlelvfAPCSPIAGGKVNWIAKSDQEIIDATMEELARLFPTEiaadgSKAKLRKYAVVKTPRSVYAAIPGRNKYRPSQETPIKNFVLAGDWTSQKFLGSMEGAVLGGKLAAEVVA 535
                  89***********************************999999999.******************************766677899999999999**997777******87736788999********9877766655544689999**********************9999888889************9975.88899999999999999****************************8876555544443267777*********************998888999*********************.88888888888777777776666666677777455443333344456788999*********************988888899999**********************************************************9885 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0     1e-13   2.2e-11       2     175 ..      76     264 ..      75     281 .. 0.81
   2 ?    0.9   0.0      0.14        29     254     328 ..     318     393 ..     296     459 .. 0.80

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1e-13
    TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn.......kgklvpvPs....kiselvkflLlslgkklraglmle..eirkks..pgkd.eSveefvrrrlGdevlen.liepllsGiYagDvskLSlk 175
                  kk v+++GgG+sGL+ a +l+    +   +++Ea+d  GGk+   ++e+G  +E G + + +  + +++l  +l + + l+  +  +  f +++        + + ++P      ++ l++ ++l+lg+kl+++  l    i  +s   ++d  Sv +f+r+    e +++ +  ++ + +   D++kLS+ 
  MMETSP1174-20130828|38522_1  76 KKSVAIIGGGLSGLACAKYLSEA--GHAPTVYEARDVLGGKVSaWQDEDGDWIETGLHIFFGAYPNMMNLFTELDIHDRLQW-KIHKMIFAMQElpgefttFDFIPGIPApfnfGLAILMNQKMLTLGEKLQTAPPLLpmLIEGQSfiDQQDeLSVTQFMRKYGMPERINEeVFISMAKALDFIDPDKLSMT 264
                  789******************99..66779************96799**********************************9.67788888888988888766666676522225788899999*********965551145555587556658******98655666665577778888888899999986 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.14
    TIGR00562 254 tklekrganetleakdGvkvetdsvvltvpakkaaklLkel..sesaskeldkiqsppvilVnlglPekdvidaelk 328
                  +  e+ g+ + l + dG kv +d+ v ++p   + + ++    + +  +++d+++  pvi+  + + +k +i +++ 
  MMETSP1174-20130828|38522_1 318 VVDESDGSVKHLLMGDGSKVVADQYVSAMPVDIVKRYIPTKwqNMPYFRQFDELEGIPVINLHMWFDKK-LIGMDHL 393
                  44566778788889999999999999999998887777653114578999***********99998666.5888875 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   4.4e-08       2      50 ..      80     129 ..      79     146 .. 0.88
   2 ?   -3.3   0.0       2.7   5.5e+02     220     271 ..     293     346 ..     291     354 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.1e-10
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtG 50 
                   +iG+Gl+GLA+A  L  aG++ tv e+rd +GG+ ++++++ G  + tG
  MMETSP1174-20130828|38522_1  80 AIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEdGDWIETG 129
                  79*************************************98647666666 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.7
    TIGR02734 220 lvealaklaedlggelrlnaeveeieteg..erataveledgerleadavvsna 271
                  l e ++  +e  +g++ ++++ +ei +++  ++++++  +dg+++ ad  vs+ 
  MMETSP1174-20130828|38522_1 293 LCEPMKAFIESRDGSVVMKNRLKEIVVDEsdGSVKHLLMGDGSKVVADQYVSAM 346
                  677888899988888888888888777665588889999999999999999985 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   4.8e-10   9.9e-08     144     182 ..      77     115 ..      68     118 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 4.8e-10
    TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                  k va++G G +Gla+a+ l++aGh  tv+e  d  GG +
  MMETSP1174-20130828|38522_1  77 KSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKV 115
                  78**********************************976 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.4e-09   2.8e-07     119     179 ..      54     114 ..      43     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.4e-09
    TIGR01318 119 ryitdkalakgwrpdlskvkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                   y   +al   ++ dl    +++k va+iG+G +Glaca  l+ aG + +v++  + +GG 
  MMETSP1174-20130828|38522_1  54 PYREANALSSRFKNDLRVTGDNKKSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGK 114
                  5777899***********************************************9999995 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     9e-07   0.00018       2      44 ..      77     119 ..      76     125 .. 0.93
   2 ?    4.6   0.0     0.011       2.2     234     315 ..     293     371 ..     276     385 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9e-07
    TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                  ksv +iG+G++Gl++a  l++ G   t++ea  ++GG  s+++
  MMETSP1174-20130828|38522_1  77 KSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQ 119
                  79***********************************988876 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.011
    TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelleeaalskgyrkrlkkl 315
                  l + +++ ++ ++g++++++r+++i ++e   +  v++     +  +v ad+ v ++p+  + + ++++ ++  y ++ ++l
  MMETSP1174-20130828|38522_1 293 LCEPMKAFIESRDGSVVMKNRLKEIVVDESDGS--VKHLL-MGDGSKVVADQYVSAMPVDIVKRYIPTKWQNMPYFRQFDEL 371
                  556667778999**************9655544..44444.56888999*****************9888888887777665 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.8e-08   1.4e-05     378     420 ..      75     117 ..      63     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 6.8e-08
    TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                  ++k v ++GgG +Gl+ a+  ++ Gh+ t++e  + lGG+v +
  MMETSP1174-20130828|38522_1  75 NKKSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSA 117
                  4699************************************975 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     9e-08   1.8e-05     131     172 ..      74     115 ..      62     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 9e-08
    TIGR01316 131 stkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                    kk va+iG G +Gla+a+ l+ +Gh  tv+ea +  GG +
  MMETSP1174-20130828|38522_1  74 DNKKSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKV 115
                  56889*****************************99888865 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.4   1.4e-07   2.9e-05       2      39 ..      79     116 ..      78     119 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
    TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                  va+IG+G++g+a+a+ L+++G+  t++e+++ l+ + S
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVS 116
                  9****************************998887766 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.4e-07   0.00011     535     577 ..      74     116 ..      57     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.4e-07
    TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  ++k+ va+iG+G +Gl+ + +l+ aG+  tv+e ++  gG v+
  MMETSP1174-20130828|38522_1  74 DNKKSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVS 116
                  56779********************************999886 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   8.6e-06    0.0018      22      59 ..      77     114 ..      58     119 .. 0.86
   2 ?   -2.1   0.0       1.9   3.8e+02     189     226 ..     432     469 ..     428     477 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.6e-06
    TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                    v+i+G+G sGL++a+yl+++g    v e +  +GG 
  MMETSP1174-20130828|38522_1  77 KSVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGK 114
                  579*********************99999999989885 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.9
    TIGR00292 189 lgGekslyaekaeaallentrevvdnlyvaGmavaavd 226
                  + G k  +  k+++++++ t e +  l+ + +a+  ++
  MMETSP1174-20130828|38522_1 432 IAGGKVNWIAKSDQEIIDATMEELARLFPTEIAADGSK 469
                  67889999999999999999999999998887776655 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   5.5e-06    0.0011       5      85 ..      80     159 ..      77     185 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 5.5e-06
    TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisdfvelneyqhrvlk 85 
                   i+G GlsG  +a+ l++ ++   v e r+ +GG +   +de+g  + + G hif     ++++   ++   ++ q ++ k
  MMETSP1174-20130828|38522_1  80 AIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEDGDWI-ETGLHIFFGAYPNMMNLFTELDIHDRLQWKIHK 159
                  59*********************************999999997665.67*****99999999888777666666665544 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   9.6e-06     0.002       1      38 [.      79     116 ..      79     118 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.6e-06
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38 
                  v+iiGgG +Gl +A  ++e+g++ +++E+++ +g K++
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVS 116
                  79*********************************996 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2     3e-05    0.0061       1      31 [.      79     109 ..      79     118 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3e-05
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekde 31 
                  v++iGgG+ Gl+ A +L+++gh  t+ e ++
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARD 109
                  79************************99874 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00053      0.11       2      24 ..      79     100 ..      78     121 .. 0.82
   2 ?    2.1   0.0     0.073        15     158     181 ..     463     486 ..     453     488 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00053
    TIGR01988   2 ivIvGgGlvGlalAlaLassadl 24 
                  ++I+GgGl Gla+A  L++ +  
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAG-H 100
                  89***************9776.3 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.073
    TIGR01988 158 vgADGanSkvrqaagikttewnye 181
                  ++ADG++ k+r+ a +kt +  y+
  MMETSP1174-20130828|38522_1 463 IAADGSKAKLRKYAVVKTPRSVYA 486
                  89***************9988775 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.024     374     419 ..      78     123 ..      67     130 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdG 419
                  +v ++GGG +Gl  a+ l+ +Gh  t+ ea   lGG v +    dG
  MMETSP1174-20130828|38522_1  78 SVAIIGGGLSGLACAKYLSEAGHAPTVYEARDVLGGKVSAWQDEDG 123
                  6889*********************************998776665 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031     0.064       2      33 ..      79     110 ..      78     128 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00031
    TIGR01087   2 vlilGlgktGravaefLaekgaevtvtdlkke 33 
                  v i+G g +G a+a++L e+g+  tv+  ++ 
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHAPTVYEARDV 110
                  89************************988876 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00034      0.07       3      25 ..      79     101 ..      78     108 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00034
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkk 25 
                  v+iiGgGl+Gl+ca  l eaG+ 
  MMETSP1174-20130828|38522_1  79 VAIIGGGLSGLACAKYLSEAGHA 101
                  79******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 1185.93
//
Query:       MMETSP1174-20130828|38525_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.8   0.0       0.02   12.1   0.0    1.2  1  TIGR00109 hemH: ferrochelatase


Domain annotation for each model (and alignments):
>> TIGR00109  hemH: ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.9e-06      0.02      89     124 ..     546     581 ..     527     588 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.9e-06
    TIGR00109  89 eeidakvyialryaePfleeavkellkdeveklvvl 124
                  + +d k  +a+r+ +P+++++++ l++d+ +klv+ 
  MMETSP1174-20130828|38525_1 546 DVTDYKKSLAMRFSNPYIKDTLQRLAEDGSQKLVTT 581
                  6678999**************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.48
# Mc/sec: 1988.09
//
Query:       MMETSP1174-20130828|38526_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 435.08
//
Query:       MMETSP1174-20130828|38527_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 533.24
//
Query:       MMETSP1174-20130828|38528_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 647.57
//
Query:       MMETSP1174-20130828|38532_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 188.56
//
Query:       MMETSP1174-20130828|38534_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 325.85
//
Query:       MMETSP1174-20130828|38530_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.1e-100  331.5   0.0   7.7e-100  331.1   0.0    1.1  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    4.6e-17   59.8   0.0    5.7e-12   43.3   0.0    2.2  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    1.6e-08   32.0   0.0    1.2e-07   29.2   0.0    2.0  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    8.3e-06   23.6   0.0    1.4e-05   22.8   0.0    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.1   0.0  7.6e-103  7.7e-100       2     245 .]      74     326 ..      73     326 .. 0.96

  Alignments for each domain:
  == domain 1    score: 331.1 bits;  conditional E-value: 7.6e-103
    TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpv.........kkkylgdeeavaaaaeavanqGk 245
                   lv++rhG+seWn+ nlftGW dv l+  Gk+ea+++++ l +e++  dvaytsllkra +tl ivl+ + q+ +pv+ +Wrlner yG l+Gldk+et+ekyGe+qvk wrrs+ ++Pp++d+ +e+ p ++++ya++ ++++Pl+e+l+dtv r lPywe++i+p+lk gk+vl++ahGns+r+++k+++++s+++i  l+iPtgiPlvy+ld++lkp+         + ++lgd+e+ ++a e vanq k
  MMETSP1174-20130828|38530_1  74 TLVFLRHGQSEWNEANLFTGWADVGLTTLGKNEAAMGATELWKEGIVLDVAYTSLLKRAGQTLDIVLKITGQEDIPVNYNWRLNERMYGGLTGLDKKETVEKYGEDQVKEWRRSYTTPPPPIDTASEFWPGNNNKYAHIPEEDIPLSECLQDTVTRTLPYWEESIMPALKRGKTVLVAAHGNSIRGILKYIDEISEADITGLEIPTGIPLVYQLDKDLKPIfdaratgllSGYFLGDPEETKKAQELVANQSK 326
                  69*************************************************************************************************************************************************************************************************************************974433333324579*****************86 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   5.6e-15   5.7e-12       1     109 [.      75     191 ..      75     202 .. 0.92
   2 !   14.7   0.0   3.3e-06    0.0034     105     171 ..     211     280 ..     195     283 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 5.6e-15
    TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp..eldawakdlaha 109
                  l+++RHg+ e+n+ + + G +Dv+L+  g+++aa+ +++l  e   +d  ++S l+R+ ++ +++     ++++p++++ rL+E  +G   g + +e +eky   ++++w +++ + 
  MMETSP1174-20130828|38530_1  75 LVFLRHGQSEWNEANLFtGWADVGLTTLGKNEAAMGATELwkEGIVLDVAYTSLLKRAGQTLDIVLkitGQEDIPVNYNWRLNERMYGGLTGLDKKETVEKYGedQVKEWRRSYTTP 191
                  689********************************99999888999999***********999977555899******************************988899999887665 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.3e-06
    TIGR03162 105 dlaharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsieveyg 171
                   + +  +p  E ++d ++R    +ee +     ++++vl+ +Hg  ir +l ++ +++ ++++ +e+++g
  MMETSP1174-20130828|38530_1 211 HIPEEDIPLSECLQDTVTRTLPYWEESIMPalkRGKTVLVAAHGNSIRGILKYIDEISEADITGLEIPTG 280
                  4555678889**************997665577999********************99988888877766 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-10   1.2e-07       1      95 [.      74     172 ..      74     185 .. 0.87
   2 ?    0.2   0.0     0.086        89     121     161 ..     225     262 ..     211     267 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.2e-10
    TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerl..adlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelkeL 95 
                  t++++rhg+s  n a++++G+++ v L+  G++ aa  a+ l  +++ ++  ++s l+r+ +t++ +++ +    ++v+ + rl+e  YG  tG + ke 
  MMETSP1174-20130828|38530_1  74 TLVFLRHGQSEWNEANLFTGWAD-VGLTTLGKNEAAMGATELwkEGIVLDVAYTSLLKRAGQTLDIVLKITgqeDIPVNYNWRLNERMYGGLTGLDKKET 172
                  799******************97.************9999985567999****************99987743356778899**********99876665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.086
    TIGR03848 121 evqaravaavreldarleeehgpdavwvavshgDviksvla 161
                  ++ +r    +  +++ +    +++++ ++ +hg+ i+ +l 
  MMETSP1174-20130828|38530_1 225 DTVTR---TLPYWEESIMPALKRGKTVLVAAHGNSIRGILK 262
                  44444...34567788888888999999*********9985 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.4e-08   1.4e-05       5      69 ..      77     145 ..      74     182 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.4e-08
    TIGR00249   5 lmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadalde 69 
                   +rHG+ + ++a       +  Lt+ Gk+ea + a  L k+g+ ld  ++S l RA qt++iv +  ++
  MMETSP1174-20130828|38530_1  77 FLRHGQSEWNEAnlftGWADVGLTTLGKNEAAMGATELWKEGIVLDVAYTSLLKRAGQTLDIVLKITGQ 145
                  689***9998886776567889*****************************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1140.52
//
Query:       MMETSP1174-20130828|38536_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 358.26
//
Query:       MMETSP1174-20130828|38535_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-33  112.0   2.4    2.2e-32  110.6   1.7    1.7  1  TIGR00145 TIGR00145: FTR1 family protein


Domain annotation for each model (and alignments):
>> TIGR00145  TIGR00145: FTR1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   1.7   5.4e-36   2.2e-32       3     211 ..      84     322 ..      82     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 5.4e-36
    TIGR00145   3 smlavflvvlREglEAalvvsvllsylk...................raqrtklkivvwvGvlagvaislaigigvigaygslekee....keLlegilgviavvmlsymvlwmlr....aarkvrvkierq....leealkkkrsglalallaFiaVvREglEtVlFlaalqqklaataligaavaGlivavvlgfLlyrlgvrlsLklFfllssslllliaagLlsggvkelnlassl 211
                  s l++f++vlRE+lEA ++++vl+ yl+                   + +  + + +v+ G+ ag   ++  g+++  +y+s e         + eg+l + a + l+y  +  l     + ++++ k e++    ++e++k  ++++ ++ l   +V REg+E+V+F+++++   + +al  a ++Gliv+  lg+  + +  ++ L  Ff++  ++ l+++agLls++ +e++ a++ 
  MMETSP1174-20130828|38535_1  84 SSLPAFIIVLRETLEATVLLAVLIQYLQragqeaadskedeaaanemKRKFSQYNSQVYWGAAAGGLGTVVFGTIILSLYYSAEAVMppkvAYIVEGVLLLFASIELTYFFVTHLApgmkSDNQWKKKWEINlgglVNEVIK-DGERKKFFWLTANTVFREGFEAVIFITPFAPLAPPWALTIAGILGLIVGLFLGMTTFMGSQKMDLTKFFIAAAVFFLFMSAGLLSHSSYEFQKAGIY 322
                  6789**************************************999999999999*****************************9988888899****************988654445446666777666551121555555.666*******************************************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1692.76
//
Query:       MMETSP1174-20130828|38543_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 834.36
//
Query:       MMETSP1174-20130828|38541_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1488.29
//
Query:       MMETSP1174-20130828|38544_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.9   0.2      0.043   11.3   0.1    1.3  1  TIGR01866 cas_Csn2: CRISPR type II-A/NMEMI-associated protein Csn2


Domain annotation for each model (and alignments):
>> TIGR01866  cas_Csn2: CRISPR type II-A/NMEMI-associated protein Csn2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.1e-05     0.043      41     112 ..      14      87 ..       8      99 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR01866  41 egkegkiklsddd.keveiekeielitdvlnldindkkllkkiykkleeeit.deelrekiqelksqlveliee 112
                   +  + ++l+d+d k + i+ e   i+ +l++   +k+++k+i+  ++e+       + ++++   ++++++e 
  MMETSP1174-20130828|38544_1  14 AKIREAFSLFDKDgKNQIIQEEAPTIMRYLGVYPSEKEIIKEIIPAMQEDEPtAMIGYDRFESKMIEIMNTVEY 87 
                  567899*****************************************987643455555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 717.14
//
Query:       MMETSP1174-20130828|38539_1  [L=1001]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-42  143.4   4.1    3.9e-42  142.9   2.8    1.2  1  TIGR03440 unchr_TIGR03440: TIGR03440 family protein
    3.8e-09   34.0   0.0    6.9e-05   20.1   0.0    2.4  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00057   17.3   0.0     0.0045   14.4   0.0    2.2  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0009   15.8   0.0     0.0061   13.1   0.0    2.0  2  TIGR03524 GldJ: gliding motility-associated lipoprotein GldJ
     0.0058   14.3   0.0      0.017   12.7   0.0    1.7  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0089   13.3   0.0      0.016   12.5   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR03440  unchr_TIGR03440: TIGR03440 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   2.8   5.6e-45   3.9e-42       3     406 .]     153     613 ..     151     613 .. 0.79

  Alignments for each domain:
  == domain 1    score: 142.9 bits;  conditional E-value: 5.6e-45
    TIGR03440   3 erleevRertlallaalseed..lvlqsmpdasPlkWhlahitwffetflLrealagyraldpafealfnsyyeavG..erlpraqrglLsrpslaevlaYraeVdeavlellakad........ddeeaaelvelglqHEqqhqEllltdlkhllsvnplepaaqae...........aeaaasasaeealelpggefelGsdaeg..fafDnErprhrvlleafeldarlVtngeyleFiedgGYeepelWlsdGwawvqeegleaPlyWrre....eeeweeftlgglepldedepvlhvsyyEAdAyarwaga..rLP....teae.Wekaara...........................geaepnaaeanll............apvgaepagaegleqllgdvWeWtasayepYpgFkpleGavgeyngkfm.snqqvLrGgsvatpaehlrasyRnfflPerrwqfaGlRla 406
                  +++++  e t+al+a l+ e+  ++ + +    Pl   ++h + f  +    + l+   +ld  ++++f+s +e      r+   ++ ++  ps+++v++Yr+eV + v +++++a+         +++   +v + ++HE+ h E+  + +++l  +  + p+++++            ++ ++ ++ +   ++gg++ lG++ +   + +DnE  +++v + afe ++ l+tngeyleF+++gGY+e+++W++ Gw w+   ++ aP++W+++     ++ + +t+ ++  ++ d p++ v+y+EA Ay+ w+ +  +LP    te e W    ++                                       +             pv+a  + ++g ++++g+vWeW +++  + pgFk     ++++  + +  ++  + Ggs+a+  e++ +  R  f P+   q aG+R++
  MMETSP1174-20130828|38539_1 153 ANFQNSWELTEALFAGLQGEEpfMTPPYHDLRHPLIFYYGHSACFYVN----K-LRVAGLLDGPVNNYFESIFEVGVdeMRWDDINKNHMEWPSVDAVHEYRREVYKTVCRVIKNAAgfetlatdLEDSDWWAVPMCIAHERIHLETSSVLMRELPISYVAPPSTWPSphparsdaarvPQEGKDYPPIKLRYVEGGTVPLGKSRSFptYGWDNEYGHQKVQVGAFEASECLITNGEYLEFVKAGGYSERSYWSETGWGWRCFRNALAPTFWESQgprgFHDYKLRTVFEEIAMPWDWPAI-VNYHEARAYCAWKDEpgKLPlrviTESEhWLLRSKSdkswgaamasssrqgegepamksnvlgD-----------QlspnlnlahgseGPVNAADSTDKGFHDVMGNVWEWCEDHQCGLPGFKVHL-HYEDFTMPCFdGEHNLIMGGSFASTGELASQWGRYQFRPHF-FQHAGFRVC 613
                  678888899********9999866666777789********9987533....2.34444566666666666666533114566678999**************************999987775334445567889***********8887777766666667777667788887777666677788899999*********66654369***************************************************************9985443444455555566677788876.************9754489955556665466555558999999999998766666666555543...........044444455555588888888889*************************98.9*******997899999*********999999999999986.567899987 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     1e-07   6.9e-05      52     118 ..     798     868 ..     782     871 .. 0.87
   2 !   11.2   0.0   5.1e-05     0.035     114     152 ..     892     930 ..     885     932 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1e-07
    TIGR01983  52 kvlDvGcGgGllseslarl..gae.vtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfD 118
                  k lD+GcG G  + sla +  g+e vtg++ls++ ++vA++ ++  ++  +i+ e  ++e+la++  ++fD
  MMETSP1174-20130828|38539_1 798 KALDLGCGLGGSTFSLAAKegGFEsVTGVELSHNFVKVAQELQRDGNVPyQIRLEGDQLEDLAAQVPAEFD 868
                  679*****99888888765225558******************99999889*************9999998 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 5.1e-05
    TIGR01983 114 kesfDvvlamEvlEHvadleeilkecaellkpggilfls 152
                  + ++D++l+ +v+   ++++++l+++a+++ pgg+l+l+
  MMETSP1174-20130828|38539_1 892 QPAYDAILMGNVVCRLPNPAKVLNSLASMVTPGGVLMLT 930
                  567*********************************997 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.6e-06    0.0045      48      95 ..     798     845 ..     782     868 .. 0.84
   2 ?    0.0   0.0      0.16   1.1e+02     112     148 ..     892     928 ..     854     934 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.6e-06
    TIGR02752  48 kaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdakl 95 
                  kald+ cg +  + +la + g   +v+g+++s+n+++v++e  +d ++
  MMETSP1174-20130828|38539_1 798 KALDLGCGLGGSTFSLAAKEGGFESVTGVELSHNFVKVAQELQRDGNV 845
                  79**************************************99888776 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.16
    TIGR02752 112 dnsfdyvtigfglrnvpdylqvlkemarvvkpggkvv 148
                  + ++d + +g  +  +p+  +vl+ +a +v pgg ++
  MMETSP1174-20130828|38539_1 892 QPAYDAILMGNVVCRLPNPAKVLNSLASMVTPGGVLM 928
                  357888999999999*******************764 PP

>> TIGR03524  GldJ: gliding motility-associated lipoprotein GldJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.9e-06    0.0061      58     111 ..     335     390 ..     321     462 .. 0.89
   2 ?    0.1   0.0     0.074        51     339     363 ..     527     551 ..     481     556 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8.9e-06
    TIGR03524  58 alglvfveggtftmgkvqddvmfdwnntptkqhvq..sfymdetevtnseyleyle 111
                  +  l +veggt  +gk +    + w+n   +q+vq  +f   e+ +tn+eyle+++
  MMETSP1174-20130828|38539_1 335 PIKLRYVEGGTVPLGKSRSFPTYGWDNEYGHQKVQvgAFEASECLITNGEYLEFVK 390
                  456789*********************988777763379999999********986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.074
    TIGR03524 339 eiksyepndfglydmagnvaewvad 363
                  ++ + ++ d g++d+ gnv ew  d
  MMETSP1174-20130828|38539_1 527 PVNAADSTDKGFHDVMGNVWEWCED 551
                  5677788999************987 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.5e-05     0.017      37     134 ..     798     931 ..     786     935 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.5e-05
    TIGR02072  37 kvLdiGcGtGiltral.lkrfpqaelialDiseemleqakkkls.............................nvqficgdiek....lplekks..fDlivSnlalQWlddlsevlaelarvlkpgGllafst 134
                  k+Ld+GcG G  t  l +k+   ++++ + +s +  ++a++ ++                             +v f++gd+++      + + +  +D i    ++  l ++++vl++la++++pgG+l++++
  MMETSP1174-20130828|38539_1 798 KALDLGCGLGGSTFSLaAKEGGFESVTGVELSHNFVKVAQELQRdgnvpyqirlegdqledlaaqvpaefdreRVRFVQGDACNpgpeWAISDGQpaYDAILMGNVVCRLPNPAKVLNSLASMVTPGGVLMLTS 931
                  89******99887766157888999****************9999***************************99********972222344444478*****9999999**********************987 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.3e-05     0.016      57     115 ..     798     859 ..     787     869 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
    TIGR02021  57 kvlDAGCGtGllsielA.krG..aivkavDiseklvelarkraekedeaenveFevndlesl 115
                  k lD GCG G  + +lA k+G    v++v++s+++v++a++ +++ ++  +++ e ++le l
  MMETSP1174-20130828|38539_1 798 KALDLGCGLGGSTFSLAaKEGgfESVTGVELSHNFVKVAQELQRDGNVPYQIRLEGDQLEDL 859
                  679************9725563447***************9999888878888887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.17s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3002.75
//
Query:       MMETSP1174-20130828|38542_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|38546_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1174-20130828|38545_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-42  141.9   0.4    6.8e-42  141.4   0.3    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    2.3e-20   70.5   3.9      9e-20   68.6   2.7    1.8  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    4.4e-17   59.7   2.4    1.5e-12   44.7   0.5    3.0  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    6.3e-14   49.8   3.8    7.9e-07   26.5   0.0    2.6  2  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    5.5e-12   43.6   0.1    1.9e-09   35.2   0.1    2.1  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    2.9e-08   30.7   7.4    0.00042   17.0   0.0    2.1  2  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    3.2e-07   27.7   1.3     0.0013   15.8   1.4    2.1  2  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    7.4e-06   23.4   0.3    8.3e-06   23.2   0.2    1.2  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4   0.3   1.3e-44   6.8e-42       1     323 [.      30     362 ..      30     364 .] 0.89

  Alignments for each domain:
  == domain 1    score: 141.4 bits;  conditional E-value: 1.3e-44
    TIGR02824   1 mkaieieeaggpevlelse.aplpelkagevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevsk.fkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTv.wsnlfelakl.kagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvai...........nyreedFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggakaeldlakllakrltltgstlRarsaeeKaaiaaeleekvwpllaegkvrpvidkvfpledaakAhellessehiGKivL 323
                  m+a  i+e+g++  +++++  ++p+l++g+vli+ + aG+N  D   r+G Y+   +   i G E  G+v+a+  e ++  kvGdrv        yae+++v+a ++lpvpe++ l  a a+    +T+ + +   +a+l ++g+++Lihg+ sG+G  a+q+ak  g+kv+ t+ s+ k ++a+  Gad  i           +y++ d v++v+e t g Gv  ++D +g++  e  l++la  G ++  +   ga    +  k +ak   +t   l   s++ + ++    +++++ ++++g++++++d+ fpl++aa+ h +le+++ +GK++ 
  MMETSP1174-20130828|38545_1  30 MRAAVIRETGASTNMKVEDdYAVPKLAPGQVLIQNEYAGLNFIDTYHRSGLYAR--ELPFIGGQEGGGVVAATTPEAEQfCKVGDRVAYSSVFQTYAEFTAVPAAKTLPVPEDVPLDVAVACGVQGLTAhYLTHSAHAGLaQPGQWMLIHGAGSGVGQWATQMAKIRGYKVIGTC-SKGKEAVARGTGADELIvlnevegtsyeDYTSVDIVSRVMEVTGGVGVHAVIDGIGAATYEIALNSLAVRGIFISYGNASGAVPAYPPLKHIAKSSFMTRPKLNDYSQT-REELLGR-ANDIFGWISDGSLKVTVDRLFPLAEAAEGHDYLEAGKSTGKVLY 362
                  788899999***9**99862689*****************************85..6889*****************99669******99999**************************999999888835555666666267****************************9998.56777888889***99855555554444578889999*********************************************999999999999999999999776655.4555544.579***************************************86 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   2.7   1.8e-22     9e-20       2     247 ..      32     284 ..      31     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.6 bits;  conditional E-value: 1.8e-22
    TIGR02823   2 alvvekedekvsaele.elsledlpegdvlikvaysslNyKDalaitgkgkvvreyPlvpGiDlaGtvvese..dpr.fkeGdeVivtgydlgvshaGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreeleeek..........kkpleker...wagavDtvGgkvlanvlkqlkyggavaacGlaaga 247
                  a v++++ +++++++e + ++ +l +g+vli+ +y++lN+ D++    +g   re P+++G +  G+v++++   ++ +k Gd+V   ++      +  y+e++ v+a   +p+Pe++ l  a++ G+ G+TA    +   +agl++    +l+ GA  gVg+ a+++ + +Gy+v+ + +k  +e++ +  Ga+e+i  +e+e ++          ++ +e +      +++D +G+++ + +l++l  +g+  ++G+a+ga
  MMETSP1174-20130828|38545_1  32 AAVIRETGASTNMKVEdDYAVPKLAPGQVLIQNEYAGLNFIDTYH--RSGLYARELPFIGGQEGGGVVAATTpeAEQfCKVGDRVAYSSV------FQTYAEFTAVPAAKTLPVPEDVPLDVAVACGVQGLTAHYLTHS-AHAGLAQPGQWMLIHGAGSGVGQWATQMAKIRGYKVIGTCSKG-KEAVARGTGADELIVLNEVEGTSyedytsvdivSRVMEVTGgvgVHAVIDGIGAATYEIALNSLAVRGIFISYGNASGA 284
                  6677776667777776257889********************975..566789*************998864213342588999987654......678**********************************987666.56677777789**************************988776.567999******9999988765411111111112333322122246789999999999999999999999999999885 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.3e-06    0.0022       3     110 ..      25     119 ..      23     122 .. 0.79
   2 !   44.7   0.5     3e-15   1.5e-12     135     382 ..     116     359 ..     115     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.3e-06
    TIGR01751   3 vvkeemeafairkerdkdprkalrv.eqvpvpelgpdevLvavmaagvnynnvWaalgePvsvlaarrkrgkddepfhiiGsdasGvvlrvGegvkrv.kvGDevvvscl 110
                  + +e+m+a +ir+   +     ++v ++  vp+l+p++vL++   ag+n+          +++ +    +++ ++pf i+G ++ Gvv ++ ++ +++ kvGD+v  s++
  MMETSP1174-20130828|38545_1  25 TIPETMRAAVIRE--TG-ASTNMKVeDDYAVPKLAPGQVLIQNEYAGLNF----------IDTYHRSGLYAR-ELPF-IGGQEGGGVVAATTPEAEQFcKVGDRVAYSSV 119
                  6789999999999..34.444566615789*******************9..........566665556666.7898.9**********99988887549****988765 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 3e-15
    TIGR01751 135 yetnyGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfdlkgrlpdlnseavkewtkevkrfgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvicggttGynldlD.aryL....WmkqkriqGshfan...lreasevnrlvakgrvdPtLskvysleeigkaaqkllanelqGk 382
                  y + + ++aef+ v + + lP P+ +  + a +  + + ta+    + ++   +pG+ +Li Ga  G+G +a+q+a+ +G   ++  s+  k  +ar  Ga+ +i  ++++          +  +++t  +  +  +++ev+G+  v+ v++  G at+ +++      G+ +  g ++G    +  ++++    +m + ++          l +a+++   +++g ++ t++++++l e ++ +  l+a++ +Gk
  MMETSP1174-20130828|38545_1 116 YSSVFQTYAEFTAVPAAKTLPVPEDVPLDVAVACGVQGLTAHYLTHSAHAGLAQPGQWMLIHGAGSGVGQWATQMAKIRGYKVIGTCSK-GKEAVARGTGADELIVLNEVE---------GTSYEDYT--SVDIVSRVMEVTGGVGVHAVIDGIGAATYEIALNSLAVRGIFISYGNASGAVPAYPpLKHIakssFMTRPKLNDYSQTReelLGRANDIFGWISDGSLKVTVDRLFPLAEAAEGHDYLEAGKSTGK 359
                  6677899**********************************8777777777789****************************9998765.678899*****9999766654.........44555564..456678899************************999999999999999997655532333322115555555432221112244567777777888888888888888888887777777777776 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.5e-09   7.9e-07       2      86 ..      30     117 ..      29     120 .. 0.84
   2 !   23.6   2.2   1.1e-08   5.9e-06     129     216 ..     111     201 ..     109     273 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.5e-09
    TIGR03989   2 tkaavlrelg..kkfeve.eielddPkegevkvklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgvtel.keGdhvvls 86 
                   +aav+re+g  ++++ve + ++ + + g+v+++ + +Gl   d++ ++G ++  ++P++gG eG Gvv +  p+ +++ k Gd v  s
  MMETSP1174-20130828|38545_1  30 MRAAVIRETGasTNMKVEdDYAVPKLAPGQVLIQNEYAGLNFIDTYHRSGLYAR-ELPFIGGQEGGGVVAATTPEAEQFcKVGDRVAYS 117
                  5899999876115667762467778889***********************996.6*******************9986489**99776 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.1e-08
    TIGR03989 129 gedvgqmcllgtfseytvveeasvvkidkdipldkaalvgC.gvttGf.GsavkaadvkaGdtvvvvGiG.GvGinavqGaavaGarkvva 216
                  g+ v+  ++  t++e+t v+ a ++++ +d+pld a+  g  g+t+ +   +++a+ +++G+ +++ G G GvG  a q a++ G + + +
  MMETSP1174-20130828|38545_1 111 GDRVAYSSVFQTYAEFTAVPAAKTLPVPEDVPLDVAVACGVqGLTAHYlTHSAHAGLAQPGQWMLIHGAGsGVGQWATQMAKIRGYKVIGT 201
                  56788889999***********************986544323445552456778889***********989************9886644 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   3.8e-12   1.9e-09      21     199 ..      49     219 ..      31     244 .. 0.87
   2 !    6.4   0.0    0.0022       1.1     288     332 ..     320     361 ..     294     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 3.8e-12
    TIGR02817  21 elakPkpkgrdllvevkavsvnPvdtkvrkkvapeaeelkilGwdaaGvvkavGeevtlf.kvGdevfyaGalerpGsnaefhlvderivgkkPkslsfaeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavi 199
                  + a+Pk     +l++ +    n +dt  r    +++  + i G +  Gvv a+ +e++ f kvGd+v y+  ++   ++aef +v +      P+ +  + a a  +  +ta  l       +++ a+  + +li Ga+ Gvg  ++q+a+ + + +vi+t+s+   ++ ++  Ga+ +i
  MMETSP1174-20130828|38545_1  49 DYAVPKLAPGQVLIQNEYAGLNFIDTYHRSGLYARE-LPFIGGQEGGGVVAATTPEAEQFcKVGDRVAYSSVFQ---TYAEFTAVPAAKTLPVPEDVPLDVAVACGVQGLTAHYLTHS---AHAGLAQPGQWMLIHGAGSGVGQWATQMAK-IRGYKVIGTCSKGK-EAVARGTGADELI 219
                  456788888899999999999********9999887.78899***************99889********9987...8**********************************988764...56677788899*****************97.6789*******975.4567888888766 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0022
    TIGR02817 288 nevaelvdeGkikttlaetlGainaanlkrahaliesgkarGkiv 332
                  n++   + +G +k t+++ +   +aa   + h  +e+gk+ Gk++
  MMETSP1174-20130828|38545_1 320 NDIFGWISDGSLKVTVDRLFPLAEAA---EGHDYLEAGKSTGKVL 361
                  56677899************999997...69************86 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.2e-07   0.00042       2      83 ..      30     115 ..      29     120 .. 0.84
   2 !   13.8   3.7   7.7e-06     0.004     131     271 ..     123     274 ..     118     286 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.2e-07
    TIGR03451   2 vkaviarskgapvele...divvpdpgpgevvvkiqacgvchtdlayreggisdefpfllgheaagvveavgegvtd.vepgdyvv 83 
                  ++a + r+ ga+ +++   d  vp+  pg+v+++ + +g+   d  +r+g  + e pf+ g e  gvv a  ++ ++  ++gd v 
  MMETSP1174-20130828|38545_1  30 MRAAVIRETGASTNMKvedDYAVPKLAPGQVLIQNEYAGLNFIDTYHRSGLYARELPFIGGQEGGGVVAATTPEAEQfCKVGDRVA 115
                  5677777777776553223789***********************************************99988876257899885 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.7e-06
    TIGR03451 131 faektlvaagqctkvdpaadpavagllgcgv...mag.lgaavntgevkrgdsvavigvg.gvgeaaiagaalagakkiiavdiddkklerarelgathtvnss...........eedvveaireltggfgadvvidavgrpetykqafyardlagt 271
                  +ae t v a ++  v  ++  +va    cgv    a  l  +  +g  + g+ + + g g gvg+ a   a++ g k i +   ++ k + ar  ga + +  +           + d+v ++ e+tgg g+  vid +g   ty+ a+ +    g 
  MMETSP1174-20130828|38545_1 123 YAEFTAVPAAKTLPVPEDVPLDVAV--ACGVqglTAHyLTHSAHAGLAQPGQWMLIHGAGsGVGQWATQMAKIRGYKVIGTC--SKGKEAVARGTGADELIVLNevegtsyedytSVDIVSRVMEVTGGVGVHAVIDGIGA-ATYEIALNSLAVRGI 274
                  7788888888888888888877774..4554110333134455666777889999999986799999999999987554443..4455566666666654422212333443332459**********************7.589998877666665 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00021      0.11       1      71 [.      53     118 ..      53     122 .. 0.93
   2 !   15.8   1.4   2.6e-06    0.0013     109     232 ..     122     247 ..     118     286 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
    TIGR03366   1 palaeGevlvrvllatvCGsdlhtvaGrregklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsv 71 
                  p+la+G+vl++   a +   d +  +G  + +lp + G e  G+v a+++e+     ++  +vG+Rv +s 
  MMETSP1174-20130828|38545_1  53 PKLAPGQVLIQNEYAGLNFIDTYHRSGLYARELPFIGGQEGGGVVAATTPEA-----EQFCKVGDRVAYSS 118
                  789*********************************************9997.....78899*****9985 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.6e-06
    TIGR03366 109 glaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagd...legrrvlvlGaGm.LGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr.keatdgravdvalelsGa 232
                  ++ae + ++a  + ++vp+d+p +va + +    t   + + a +     g+ +l+ GaG  +G  a+ +a+ rG  +vi++  s+ ++++a   Ga +l+  +e + +  ++ t+   v  ++e++G 
  MMETSP1174-20130828|38545_1 122 TYAEFTAVPAA-KTLPVPEDVPLDVAVACGVQGLTAHYLTHSAHAglaQPGQWMLIHGAGSgVGQWATQMAKIRGY-KVIGT-CSKGKEAVARGTGADELIVLNEVEGTSyEDYTSVDIVSRVMEVTGG 247
                  67777777775.5689******99886655555555544555554667889*********758999999*******.78876.6778899********9998766666543455555555556777664 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   1.6e-08   8.3e-06     107     190 ..     136     219 ..      38     334 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.6e-08
    TIGR02825 107 ewpdtlplslalgtvgmpgltayf.glleicg.vkggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvaylkklgfdvaf 190
                    p+ +pl +a+   g+ glta++      +g ++ g+ +l+  a   vg    q+ak++g kv+g++ s+ k a  +  g d  +
  MMETSP1174-20130828|38545_1 136 PVPEDVPLDVAVA-CGVQGLTAHYlTHSAHAGlAQPGQWMLIHGAGSGVGQWATQMAKIRGYKVIGTC-SKGKEAVARGTGADELI 219
                  46999*****985.7******9661444556636789*****************************96.45555666666666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1264.32
//
Query:       MMETSP1174-20130828|38549_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1148.79
//
Query:       MMETSP1174-20130828|38552_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|38553_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 771.63
//
Query:       MMETSP1174-20130828|38555_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   13.6   0.1     0.0067   13.4   0.1    1.1  1  TIGR00702 TIGR00702: uncharacterized domain


Domain annotation for each model (and alignments):
>> TIGR00702  TIGR00702: uncharacterized domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.6e-06    0.0067      62     106 ..      66     110 ..      42     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-06
    TIGR00702  62 kaSAlmEalErlsaeykkadetfvakpedkefdltdda.vpeglld 106
                    SA++E++Er+  + k a e+  +  e+ + ++  d  ++++ll+
  MMETSP1174-20130828|38555_1  66 NSSAMGESFERFDIDEKNAPEDPRHSSEN-QQPVDVDTnLVKQLLE 110
                  67***************999999999888.7777766657777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 691.62
//
Query:       MMETSP1174-20130828|38551_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-74  246.2   0.1    1.1e-73  245.7   0.1    1.1  1  TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase


Domain annotation for each model (and alignments):
>> TIGR00216  ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.7   0.1   2.6e-77   1.1e-73       3     274 ..      70     406 ..      68     412 .. 0.87

  Alignments for each domain:
  == domain 1    score: 245.7 bits;  conditional E-value: 2.6e-77
    TIGR00216   3 ilakalGfCfGVerAvkiaeeark.elgkkvyvlgeivHNkevverLrekgvali.....ledldelakgdtviirahGvskevleelekkglevvdaTCPlVtkvhkevkklakkgykviliGkknHpEvigiegevpekailvedl..................eeleelkla.........dekrlvvvsQTTlskeeteeivkllkkrlpekeveve........ntiCdaTqerqdavkel.....akevdlllviggknSsNtkrLleiaeeeglksvliesaeelk.................eeilkav..kvvgitaGaStPdkvvee 274
                   lak++GfC+GVer ++ a +a++ +++kk+ +++e++HN+ v+e ++ +g+++i      + +d +++gd+vi++a+G++ e+++ l ++g+++vd+TCP+V+kv++ v k++k + +++++Gk++H+E i++ + +++ +i+                      e le++k a         + k++++++QTT+ k+et++i kl++k++ +k ++ e        +tiCdaTqerqda+ e+     a e+d+++v+gg +SsNt +L+ei +++ + +++i++a+ ++                 ++ l+    +v+g+t+GaStPd  v+ 
  MMETSP1174-20130828|38551_1  70 RLAKEFGFCWGVERSIELALSASQkFSDKKLHMTNELIHNPGVNEMMNTNGIEFIektaeGKRFDTVNEGDVVILPAFGATLEEMQLLDERGVTTVDTTCPWVSKVWNVVDKHKKADMTSVIHGKYGHEESIATASFCEDYIIIKDMDeaeyvaryilnptaegkvELLEKFKNAiskgfdpdkHLKKIGLANQTTMYKKETMAIGKLFEKAMMTKFGPEEidqryaafDTICDATQERQDAITEMvgasnAGELDMIIVVGGWDSSNTAHLVEIPHQHDIVAYHINKADCISadnsityrdldgsiktqKDFLPLDrpAVIGVTSGASTPDAYVQG 406
                  689*****************999878899**************************8888778899***********************************************************************8888744333325667777788889998884455555223346655433349*****************************999999999999***************98333223579******************************************************977776551156***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 1779.72
//
Query:       MMETSP1174-20130828|38558_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-92  307.6   1.5      2e-82  274.9   0.3    2.0  2  TIGR00345 arsA: arsenite-activated ATPase ArsA
    1.6e-08   32.0   0.3    1.6e-06   25.5   0.1    2.5  3  TIGR01968 minD_bact: septum site-determining protein MinD
    2.1e-08   31.7   1.5    1.2e-07   29.3   1.1    2.1  2  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
    7.2e-08   29.7   0.1    1.5e-06   25.4   0.0    2.4  3  TIGR01969 minD_arch: cell division ATPase MinD
      1e-06   25.7   0.1    0.00014   18.7   0.0    2.2  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
    1.1e-06   26.0   0.2    4.6e-06   24.0   0.2    2.0  2  TIGR01287 nifH: nitrogenase iron protein
    4.9e-06   24.0   0.3    8.3e-05   20.0   0.0    2.6  3  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    9.8e-06   23.6   0.7      5e-05   21.2   0.0    2.4  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    1.8e-05   22.2   0.1    0.00013   19.4   0.1    2.0  1  TIGR01007 eps_fam: capsular exopolysaccharide family
    0.00019   18.7   0.1    0.00037   17.7   0.0    1.5  1  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
     0.0002   18.1   0.1     0.0012   15.6   0.0    2.0  2  TIGR00959 ffh: signal recognition particle protein
    0.00043   17.4   0.0     0.0054   13.8   0.0    2.3  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    0.00067   16.4   0.0     0.0014   15.4   0.0    1.5  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0013   15.7   0.0     0.0032   14.5   0.0    1.6  1  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
     0.0033   14.0   0.0     0.0052   13.4   0.0    1.3  1  TIGR00416 sms: DNA repair protein RadA
  ------ inclusion threshold ------
      0.012   12.7   0.0      0.063   10.3   0.0    2.1  3  TIGR01420 pilT_fam: twitching motility protein
      0.015   12.2   0.2       0.52    7.2   0.0    2.7  3  TIGR00750 lao: LAO/AO transport system ATPase
      0.035   11.1   0.0       0.12    9.3   0.0    1.8  2  TIGR03029 EpsG: chain length determinant protein tyrosine kinase EpsG


Domain annotation for each model (and alignments):
>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.9   0.3   8.7e-85     2e-82       1     264 [.      33     295 ..      33     304 .. 0.89
   2 !   33.7   0.0   2.6e-11   5.9e-09     242     297 ..     293     350 ..     290     351 .. 0.91

  Alignments for each domain:
  == domain 1    score: 274.9 bits;  conditional E-value: 8.7e-85
    TIGR00345   1 ffgGKGGVGKTtisaatairlaesgkkvllvSTDPAhslsdvfeeelGkearkvkgvenLsavEiDpqaaleeyraklkeqikenlslgldeleeqleeaals.PGideiaafdellkelkeaenefDvvifDtAPTGhtlrlLqlpevlskflekliklkeklgellkll...mgkee...eeevlekleelkeqiealrevlsDpertsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlpeeaqdeflkarkelqkkylke 264
                  f+gGKGGVGKTt s+ +a++la+   kvl+vSTDPAh+lsd+f++++Gk+++ v g++nL ++EiDp+ ++e+  +    + +e      + +++++  ++ + PGide+++f el+k++++ +  +Dv++fDtAPTGhtlrlL +p +l+k  +k++ lk+k + l   +   mg++     + +lekle+++e  e+++  + D  +t+fv+V+ipe+lsl+E+eR+v+eL+ky+++++ ++vNqvl+ +++ + l+ + e +k  l e
  MMETSP1174-20130828|38558_1  33 FVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSDAFSQKFGKHPTGVVGYDNLFCMEIDPEIDVEDLAELNG-AGAEA-----GGIQSLMTDLTQAiPGIDEAMSFAELMKQVQKMD--YDVIVFDTAPTGHTLRLLAMPTMLGKAFDKIMALKNKFSGLFGQMtsmMGAQGmpsADTLLEKLEQTREINERVNLTFKDSSKTTFVCVCIPEFLSLYETERLVQELTKYDMDTHNIVVNQVLFPDKDANELAEWYEGEKDKLPE 295
                  89*********************************************************************99865322.22222.....35667776666555******************66..*************************************9998877777666655577999*****************************************************************999999899999988887754 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 2.6e-11
    TIGR00345 242 lpeeaq..deflkarkelqkkylkeieekfedlevaevpllkeevvGleaLeklsktl 297
                  lpe+aq   + l ark++q ky ++i + +ed++v+ +pll++ev+G e+Le +s+ l
  MMETSP1174-20130828|38558_1 293 LPEQAQelLSKLLARKRMQDKYVDQIWDLYEDFHVVLMPLLNHEVRGCEKLEAFSEHL 350
                  78888856566779****************************************9987 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   6.9e-09   1.6e-06       7      39 ..      34      66 ..      30      72 .. 0.92
   2 ?   -3.4   0.0       4.5     1e+03     101     119 ..     139     158 ..     135     162 .. 0.60
   3 ?    3.8   0.0     0.029       6.5     137     173 ..     236     272 ..     226     283 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 6.9e-09
    TIGR01968  7 tsGkGGvGkttttanlgtalaklgkkvvlvdad 39
                   GkGGvGkttt+  l++ la++ +kv +v +d
  MMETSP1174-20130828|38558_1 34 VGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTD 66
                 57****************************998 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 4.5
    TIGR01968 101 lkklvkelkee.fdyvlids 119
                  +++l+k++++  +d ++ d+
  MMETSP1174-20130828|38558_1 139 FAELMKQVQKMdYDVIVFDT 158
                  45566666554477777774 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.029
    TIGR01968 137 aivvttPevsavrdadrviGlleakeieeiklivnrl 173
                   + v  Pe  ++ +++r++  l + +++ ++++vn++
  MMETSP1174-20130828|38558_1 236 FVCVCIPEFLSLYETERLVQELTKYDMDTHNIVVNQV 272
                  477999*****************************86 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   1.1   5.1e-10   1.2e-07       4      55 ..      33      86 ..      30     162 .. 0.58
   2 ?   -2.8   0.0         3   6.8e+02     146     187 ..     240     282 ..     232     310 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.1e-10
    TIGR01281  4 avyGkGGiGksttssnlsvalakkGkkvlqiGcdpkhdstftltgkl..iptvi 55
                  v GkGG+Gk+tts+ l+v la+   kvl +  dp h+ + ++++k+   pt +
  MMETSP1174-20130828|38558_1 33 FVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSDAFSQKFgkHPTGV 86
                 578**********************************97766666552245533 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3
    TIGR01281 146 aandfdalfaanriaaavsekaks.ydvklaGiianrvdkedl 187
                  +  +f +l+ ++r+++ +++  +  +++ +  ++    d+++l
  MMETSP1174-20130828|38558_1 240 CIPEFLSLYETERLVQELTKYDMDtHNIVVNQVLFPDKDANEL 282
                  4556777777777777666655544666665555555555554 PP

>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   6.7e-09   1.5e-06       5      38 ..      33      66 ..      30      73 .. 0.91
   2 ?   -3.6   0.0       4.8   1.1e+03     100     115 ..     141     157 ..     134     167 .. 0.51
   3 ?    1.4   0.0      0.14        31     132     171 ..     234     273 ..     223     285 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 6.7e-09
    TIGR01969  5 iasGkGGtGkttvtanlgvaLaklGkkvlvlDaD 38
                 ++ GkGG+Gktt++  l+v La+  +kvl++ +D
  MMETSP1174-20130828|38558_1 33 FVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTD 66
                 688****************************998 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.8
    TIGR01969 100 dvlkeiad.dvdflliD 115
                  +++k++++ d+d+++ D
  MMETSP1174-20130828|38558_1 141 ELMKQVQKmDYDVIVFD 157
                  34444433134555554 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.14
    TIGR01969 132 delllvvnPeissitDalkvkivaeklgtkilGvvlnrvt 171
                  +  + v  Pe  s+ ++ ++   + k +++   +v+n+v 
  MMETSP1174-20130828|38558_1 234 TTFVCVCIPEFLSLYETERLVQELTKYDMDTHNIVVNQVL 273
                  45677999*****************************984 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     6e-07   0.00014     102     151 ..      27      75 ..       8      85 .. 0.84
   2 ?    4.7   0.0     0.011       2.4     226     252 ..     141     168 ..     126     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6e-07
    TIGR03453 102 eklqviavvnfkGGsgktttaahLaqylalrGyrvLavDlDPqaslsalf 151
                  + lq i v   kGG gkttt+  La +la +  +vL v  DP   ls  f
  MMETSP1174-20130828|38558_1  27 KSLQWIFV-GGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSDAF 75 
                  56777655.56*******************************99998765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.011
    TIGR03453 226 ealaeved.dyDvvviDcpPqlgfltls 252
                  e +++v++ dyDv+v D++P+   l l 
  MMETSP1174-20130828|38558_1 141 ELMKQVQKmDYDVIVFDTAPTGHTLRLL 168
                  5567776548**********85555444 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.2     2e-08   4.6e-06       4      44 ..      33      73 ..      30     159 .. 0.83
   2 ?   -1.6   0.0       1.2   2.8e+02     145     171 ..     237     263 ..     226     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2e-08
    TIGR01287  4 aiyGkGGiGksttvqniaaalaeagkkvlvvGcdPkadstr 44
                  + GkGG+Gk+tt++ +a  la++  kvl+v  dP ++ + 
  MMETSP1174-20130828|38558_1 33 FVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSD 73
                 577********************************987655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.2
    TIGR01287 145 yivtsgelmalyaanniakGikkyake 171
                    v+  e+++ly ++ +++ ++ky  +
  MMETSP1174-20130828|38558_1 237 VCVCIPEFLSLYETERLVQELTKYDMD 263
                  457788999999999999999999765 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.6e-07   8.3e-05       7      49 ..      34      76 ..      30      85 .. 0.90
   2 ?   -1.4   0.0       1.2   2.8e+02      20      42 ..     140     162 ..     134     184 .. 0.79
   3 ?    0.2   0.0      0.42        95     137     177 ..     233     271 ..     230     278 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.6e-07
    TIGR03371  7 vsvkGGvGkTtltAnLasalklsgeevlaidldpqnlLrlhfg 49
                 v+ kGGvGkTt +  La+ l++   +vl++ +dp+  L+  f 
  MMETSP1174-20130828|38558_1 34 VGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSDAFS 76
                 788*******************************999987776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
    TIGR03371  20 AnLasalklsgeevlaidldpqn 42 
                  A+L + +++ + +v++ d++p +
  MMETSP1174-20130828|38558_1 140 AELMKQVQKMDYDVIVFDTAPTG 162
                  78888888888899999888876 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.42
    TIGR03371 137 adlvlvvvnadaasyallqqqalellersaerkkarflinq 177
                   +++++v  ++  s +  ++ ++el++   + +++++++nq
  MMETSP1174-20130828|38558_1 233 KTTFVCVCIPEFLSLYETERLVQELTK--YDMDTHNIVVNQ 271
                  56889999999999999999***9999..8899999***99 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07     5e-05     200     237 ..      31      66 ..       6      69 .. 0.76
   2 ?   -1.5   0.0       1.9   4.3e+02     260     285 ..     135     159 ..     130     159 .. 0.70
   3 ?   -1.6   0.0         2   4.5e+02     169     193 ..     289     313 ..     253     326 .. 0.59

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.2e-07
    TIGR03499 200 viaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtD 237
                   i + G  GvGKTTT   LA +++ +  ++kV +++tD
  MMETSP1174-20130828|38558_1  31 WIFVGGKGGVGKTTTSCCLAVQLART--RDKVLIVSTD 66 
                  445557899***************87..889******* PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.9
    TIGR03499 260 vvkdpkeleealeelkdkdliLiDTa 285
                   + + +el + ++++  +d+i  DTa
  MMETSP1174-20130828|38558_1 135 EAMSFAELMKQVQKMD-YDVIVFDTA 159
                  4555666677777765.699999997 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 2
    TIGR03499 169 daeeareklreaLekklsvkkeede 193
                  +++++ e+ +e+L+k l  k ++d+
  MMETSP1174-20130828|38558_1 289 EKDKLPEQAQELLSKLLARKRMQDK 313
                  3333333333333333333333332 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   5.6e-07   0.00013      26     139 ..      37     162 ..      22     167 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.6e-07
    TIGR01007  26 kageGkstvsaniavafaqaGyktLliDgDlrksvl...sgvf.ksrnkikGLtnllsgkadlsdaiketeienLtvitaGpvpPnPteLlqs.......kkfkelletlrky.fDyiiiDtpPig 139
                  k g Gk+t+s  +av +a++  k+L++ +D  +      s  f k+    +G  nl+  + d +  + +    n    +aG +    t+L q+        +f+el+++++k+ +D+i+ Dt+P g
  MMETSP1174-20130828|38558_1  37 KGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSdafSQKFgKHPTGVVGYDNLFCMEIDPEIDVEDLAELNGAGAEAGGIQSLMTDLTQAipgideaMSFAELMKQVQKMdYDVIVFDTAPTG 162
                  6788*************************97665431113333255566889999999887777666665555556789999*99999998753333322689******99866**********87 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06   0.00037       3      44 ..      32      73 ..      30      95 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.6e-06
    TIGR02016  3 iaiyGkGGiGksftttnlsaklallgkrvlqlGcdpkhdsts 44
                 i + GkGG+Gk+ t + l+ +la   ++vl +  dp h+ + 
  MMETSP1174-20130828|38558_1 32 IFVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHNLSD 73
                 7789********************************996443 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.2e-06    0.0012      97     138 ..      26      67 ..       7      82 .. 0.75
   2 ?   -0.1   0.0       0.3        69     173     191 ..     141     159 ..     119     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.2e-06
    TIGR00959  97 kkpavillv.GLqGsGKtttaaKlakklkkkekkkvllvalDl 138
                  +k   +++v G  G GKttt+  la + + +++ kvl+v++D 
  MMETSP1174-20130828|38558_1  26 QKSLQWIFVgGKGGVGKTTTSCCLAVQ-LARTRDKVLIVSTDP 67 
                  334455555056678***********8.667899*******95 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.3
    TIGR00959 173 ealeeakeekvdvvivDta 191
                  e ++++++  +dv++ Dta
  MMETSP1174-20130828|38558_1 141 ELMKQVQKMDYDVIVFDTA 159
                  5678899999999999998 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.4e-05    0.0054      72     116 ..      22      66 ..       6      71 .. 0.82
   2 ?    0.7   0.0      0.24        55     152     171 ..     141     160 ..     120     187 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.4e-05
    TIGR00064  72 elkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgD 116
                  ++ ++k+++ i + G  GvGKTtt   la +l+++  kvl++ +D
  MMETSP1174-20130828|38558_1  22 NIIDQKSLQWIFVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTD 66 
                  445566666666677889***********************9998 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.24
    TIGR00064 152 daikkakaknidvvliDTaG 171
                  + +k+ ++ ++dv++ DTa 
  MMETSP1174-20130828|38558_1 141 ELMKQVQKMDYDVIVFDTAP 160
                  55788899999******995 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.1e-06    0.0014      21      69 ..      10      58 ..       4      72 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.1e-06
    TIGR02928 21 deqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaae 69
                 ++++e+l + l++i++ ++ + +++ Gk G+GKt+++  +  +l++  +
  MMETSP1174-20130828|38558_1 10 EDDLEALPASLRNIIDQKSLQWIFVGGKGGVGKTTTSCCLAVQLARTRD 58
                 899*********************************9999888877655 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.4e-05    0.0032     117     151 ..      34      68 ..      14      70 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.4e-05
    TIGR03815 117 vggrGGaGAStlAaalAlaaarsglrtlLvDadPl 151
                  vgg+GG G +t ++ lA++ ar + ++l+v +dP 
  MMETSP1174-20130828|38558_1  34 VGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPA 68 
                  8********************************95 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.3e-05    0.0052      97     135 ..      32      70 ..      26     184 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.3e-05
    TIGR00416  97 iliGGdPGiGkstlllqvaaqlaknskkvlyvsgeeslq 135
                  i++GG+ G+Gk+t     a+qla+ + kvl vs++ + +
  MMETSP1174-20130828|38558_1  32 IFVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHN 70 
                  89*******************************987655 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00027     0.063     110     161 ..      16      68 ..       8      75 .. 0.88
   2 ?   -1.4   0.0      0.97   2.2e+02      89     132 ..     117     162 ..      96     202 .. 0.73
   3 ?   -2.4   0.0         2   4.6e+02     309     336 ..     200     227 ..     164     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00027
    TIGR01420 110 lpevlkelaekk.rGlilvtGptGsGKsttlAslidyinkekakhiltiEDPi 161
                  lp+ l++++++k    i+v G+ G GK+tt   l  ++ ++++k ++   DP 
  MMETSP1174-20130828|38558_1  16 LPASLRNIIDQKsLQWIFVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPA 68 
                  78999999998846789***********************9999999999985 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.97
    TIGR01420  89 gavalvlRvipskiptlee.lglpevlkelaekkrGlilv.tGptG 132
                  g++   +  +++ ip ++e +   e +k++ + ++ +i++ t ptG
  MMETSP1174-20130828|38558_1 117 GGIQSLMTDLTQAIPGIDEaMSFAELMKQVQKMDYDVIVFdTAPTG 162
                  5566667777778888754266778888888887766655466666 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2
    TIGR01420 309 akeGmqtldqslaklvkkglitleeale 336
                    +Gm   d  l+kl ++ +i++   l+
  MMETSP1174-20130828|38558_1 200 GAQGMPSADTLLEKLEQTREINERVNLT 227
                  5689999999999999999998776665 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0023      0.52      37      75 ..      32      70 ..      20      74 .. 0.89
   2 ?   -1.7   0.0       1.2   2.7e+02     115     138 ..     139     162 ..     132     164 .. 0.81
   3 ?    1.8   0.0       0.1        24     177     241 ..     267     330 ..     235     354 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0023
    TIGR00750 37 vGltGvPGaGkstlveklieelrrrGlkvaviavDPssp 75
                 + + G  G+Gk t    l+ +l r   kv +++ DP+  
  MMETSP1174-20130828|38558_1 32 IFVGGKGGVGKTTTSCCLAVQLARTRDKVLIVSTDPAHN 70
                 5678999*****************************865 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.2
    TIGR00750 115 trevvklldaaGfDvilvetvGvG 138
                    e++k ++ + +Dvi+ +t   G
  MMETSP1174-20130828|38558_1 139 FAELMKQVQKMDYDVIVFDTAPTG 162
                  56889999999******9997766 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.1
    TIGR00750 177 vvvnkaDkeeaekerlarlelsldleelferekgWrPkvlktsavegrGikelvdaieehkkvlk 241
                  +vvn+   ++++ ++ ++  ++ ++++l e+ ++   k+l    ++ + +++++d  e+++ vl 
  MMETSP1174-20130828|38558_1 267 IVVNQVLFPDKD-ANELAEWYEGEKDKLPEQAQELLSKLLARKRMQDKYVDQIWDLYEDFHVVLM 330
                  467777666666.556777899999999999999999******************9999988775 PP

>> TIGR03029  EpsG: chain length determinant protein tyrosine kinase EpsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   2.3e+02     111     225 ..      36      70 ..      20      92 .. 0.64
   2 ?    9.3   0.0   0.00053      0.12     200     225 ..     137     163 ..     103     172 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
    TIGR03029 111 aksGeGcsfiaanlaivfsqlGektllidanlrePeqhrlfklsedrGlsdvlaGrsdleaisripaledlsvlpaGavPPnPqellarpafidlldkvaeeydvvivdtpsaee 225
                  +k G G++  +  la+ +++  +k+l++                                                                                 t +a++
  MMETSP1174-20130828|38558_1  36 GKGGVGKTTTSCCLAVQLARTRDKVLIV--------------------------------------------------------------------------------STDPAHN 70 
                  5555555555555666555555555555................................................................................4444444 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00053
    TIGR03029 200 pafidlldkva.eeydvvivdtpsaee 225
                   +f++l+++v+  +ydv++ dt+++ +
  MMETSP1174-20130828|38558_1 137 MSFAELMKQVQkMDYDVIVFDTAPTGH 163
                  58*****9996369*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.52
# Mc/sec: 916.31
//
Query:       MMETSP1174-20130828|38557_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1174-20130828|38554_1  [L=1078]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       601  (0.146514); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.18s 00:00:01.32 Elapsed: 00:00:00.70
# Mc/sec: 2032.63
//
Query:       MMETSP1174-20130828|38556_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-253  839.2   1.5   7.8e-253  838.9   1.1    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     1e-164  545.8   3.6    1.6e-85  285.3   1.2    2.4  3  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   2.2e-148  492.9   1.0    2.5e-74  248.6   0.0    2.2  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   1.8e-122  407.5   8.0      1e-62  210.4   0.0    3.6  4  TIGR03689 pup_AAA: proteasome ATPase
    2.9e-19   66.9   0.0    1.2e-09   35.1   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    7.1e-15   52.6   0.0    6.2e-07   26.6   0.0    2.9  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.1e-10   38.8   0.1     0.0013   15.4   0.0    3.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    5.2e-09   33.4   0.0    1.7e-05   21.8   0.0    2.4  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.6e-08   30.3   1.5      0.029   10.4   0.1    4.2  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      1e-07   29.1   0.5      0.011   12.5   0.1    3.8  4  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.6e-07   28.9   0.0     0.0062   13.9   0.0    2.6  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    3.1e-07   27.5   0.0    0.00056   16.9   0.0    2.4  2  TIGR02881 spore_V_K: stage V sporulation protein K
    5.2e-07   26.3   0.5     0.0074   12.6   0.0    2.5  2  TIGR00763 lon: ATP-dependent protease La
    1.2e-06   25.1   3.1     0.0092   12.3   0.0    4.1  5  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    5.6e-06   23.0   0.8      0.027   10.9   0.1    3.1  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
    6.8e-06   23.7   0.3      0.025   12.0   0.0    2.4  2  TIGR01351 adk: adenylate kinases
    9.6e-06   23.5   1.3      0.038   11.8   0.0    2.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    1.5e-05   22.5   0.2       0.12    9.8   0.0    3.2  3  TIGR00678 holB: DNA polymerase III, delta' subunit
    3.6e-05   20.8   0.0      0.037   10.9   0.0    2.8  3  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    3.9e-05   21.3   0.0      0.062   10.9   0.0    2.4  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
    4.8e-05   20.8   0.0       0.13    9.6   0.0    2.5  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    9.5e-05   19.0   0.5       0.13    8.6   0.0    2.5  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    0.00064   16.0   1.9       0.71    5.9   0.0    3.9  4  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    0.00089   15.8   0.0       0.27    7.6   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0024   14.0   1.9        1.8    4.5   0.0    3.8  4  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0032   14.6   0.0       0.48    7.4   0.0    2.3  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0065   14.3   0.7        2.3    6.0   0.0    2.9  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.016   12.8   1.0        5.9    4.5   0.0    3.2  3  TIGR03027 pepcterm_export: putative polysaccharide export protein, PEP-CTERM sytem-associated
      0.023   11.0   0.0       0.63    6.3   0.0    2.2  2  TIGR00602 rad24: checkpoint protein rad24
      0.041   11.6   3.2        2.8    5.6   0.0    3.7  3  TIGR02237 recomb_radB: DNA repair and recombination protein RadB


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  838.9   1.1  5.7e-255  7.8e-253      16     730 ..      36     764 ..      24     767 .. 0.92

  Alignments for each domain:
  == domain 1    score: 838.9 bits;  conditional E-value: 5.7e-255
    TIGR01243  16 rgivridrrtaeelgvepgdvveiekgerk.avaivyrsflddkgkgiirldgylrknagvaigdrvkvk.raevkeakkvvlaptq...kirlgrdfedfvkekllg..kvlskgekvvvsvlegelklvvvsttpagivrvteatevelkeeaveeeketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea...vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvks.vakekleaeekeilkdl.......kvkkkdflealkkvkpsvskedlrvyeklakelk 730
                    +v + +++++el +  gd v +++ ++k +v iv     + +  g ++++  +rkn+ v +gd v+v  + +v   k++ + p +   +++ g+ fe ++k  +l   +++ kg+  +v      +++ vv+t p+    v+  t +  + ++++ e e k+ +v y+digg + ++ +ire++elpl+hp lf+ lg++pp+gvllygppg+gktl+a+avane+ga+f+ ingpeimsk  gese +lr+ f+eae+nap+iifideid+iapkr+++ geve+r+v+q+ltlmdglk r +v+vigatnrp+++dpalrr grfdrei+igvpd +gr ei++ihtrnm l+edvd + +a  thgfvgad+aal+ eaam+++r  ++   id+e e i +e+l+ + v+++ f+ al + +ps lre +vevpn  w+diggl+ vk+elre v++p+ ++e fek+g+ p +gvl++gppg gktl+akava+e +anfi+v+gpe+l+ w gese ++r++f+kar aap+++f+de+d+ia ar +  +      +dr++nq+lte+dg+  +++v vi+atnrpdi+dpal+rpgrld+li++p+pd ++r++i+k   r+ p+++dvdl+ +a +t+ ytgad+  +++ aa +a+res+   + + +l +++++ + d+        +   +f+ea++  + svs   l +y  +a+ l 
  MMETSP1174-20130828|38556_1  36 NSVVSLSPKKMDELQLFRGDTVLLKGKKGKqTVCIVLLD--ESQEDGNVKMNKVVRKNLRVRLGDCVTVTaQGDVPYGKRIHVLPIDdtiEGVTGNLFEVYLKPYFLEayRPVQKGDLFLVRQAMHPVEFKVVETDPSPCCIVAPDTVIHCEGDPIKREDEEKLDDVGYDDIGGCRRQMAQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRIVSQMLTLMDGLKARANVVVIGATNRPNSIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESIARETHGFVGADMAALCTEAAMQCIREKMD--LIDIEEETIDAELLDAMAVSQDHFQFALGQSNPSSLRETVVEVPNTTWDDIGGLKSVKNELRELVQYPVEHPEKFEKFGMSPSRGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARAAAPCVLFFDELDSIASARASGGGGDgggAADRVINQILTEIDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDLDSRINILKACLRKSPVSKDVDLNYVAAHTDKYTGADLTEICQRAAKLAIRESIARdMERHRLAEDNDDEMADVeeddpvpEILPSHFEEAVRASRRSVSEASLSKYASFAQTLS 764
                  4689999***************99976654145555544..44555679********************82456*99**998888662225688999********996558*******999988889************************************************************************************************************************************************************************************************************************************************************************999..9************************************************************************************************************************************************************966543322349**********************************************************************************************************964145556655444433333111122257789************************99865 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.8   7.9e+02     207     225 ..      14      32 ..       8      87 .. 0.68
   2 !  285.3   1.2   1.2e-87   1.6e-85     114     354 ..     194     432 ..     175     440 .. 0.94
   3 !  259.7   0.0   7.1e-80   9.6e-78     112     347 ..     466     702 ..     454     713 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 5.8
    TIGR01242 207 vfklakekapsiifideid 225
                  +++ ak+++p  +++dei 
  MMETSP1174-20130828|38556_1  14 IMDGAKKRSPNRLIVDEIT 32 
                  5555666677777777663 PP

  == domain 2    score: 285.3 bits;  conditional E-value: 1.2e-87
    TIGR01242 114 eer.pevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtme 354
                  ee+  +v y+diGG  +q+ +ire +elpl++p lf+ +G++pp+GvllyGppG+Gktl+a+ava+et a f  + g e++ k  Ge  + +r+ f+ a + ap+iifideid+ia kr +  t+G+ e +r + q+l+ +dG+++r nv vi+atnr++ +dpal r Grfdr i++ +pd++Grlei++ihtr+mkl edvd e +a+ t+G++Gad+ a++tea m  ire+ d + +e
  MMETSP1174-20130828|38556_1 194 EEKlDDVGYDDIGGCRRQMAQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDK--TNGEVE-RRIVSQMLTLMDGLKARANVVVIGATNRPNSIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESIARETHGFVGADMAALCTEAAMQCIREKMDLIDIE 432
                  444268****************************************************************************************************************965..667655.477889***************************************************************************************************9998765 PP

  == domain 3    score: 259.7 bits;  conditional E-value: 7.1e-80
    TIGR01242 112 eveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsst.sGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfairee 347
                   v e p+ +++diGGl+   +e+re v+ p+ +pe fe+ G+ p +Gvl+yGppG+Gktl+akava+e +a fi v g el+  + Ge    vr+vf+ a+  ap+++f de+d+ia+ r       G    +r + q+l+e+dG  ++ nv vi+atnr+di+dpal+rpGr+d+li +p+pdl+ r++ilk   rk  +++dvdl+ +a  t+  +Gadl  i+  a   aire+
  MMETSP1174-20130828|38556_1 466 TVVEVPNTTWDDIGGLKSVKNELRELVQYPVEHPEKFEKFGMSPSRGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARAAAPCVLFFDELDSIASARASGGGgDGGGAADRVINQILTEIDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDLDSRINILKACLRKSPVSKDVDLNYVAAHTDKYTGADLTEICQRAAKLAIRES 702
                  6899******************************************************************************************************************99876541466789*******************************************************************************************************96 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.4   0.5   1.4e-74   1.9e-72      47     288 ..     194     433 ..     182     443 .. 0.94
   2 !  248.6   0.0   1.9e-76   2.5e-74      35     295 ..     452     718 ..     439     728 .. 0.91

  Alignments for each domain:
  == domain 1    score: 242.4 bits;  conditional E-value: 1.4e-74
    TIGR01241  47 eeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlke 288
                  ee+   v ++d+ G+  +  ++ e+++  L++p+ f+ lG k P+Gvll+GpPG+GktL+a+ava e g  ff i G + +  + G   s +r  fe+a knaP+iifiDeiD++  kr ++ g  +    + + q+L+ mDG++++ +v+v+ atnrp+ +D+aL r GrfDr++ +  Pd +gr ei+++h++++kl+e+vd +++ar+t Gf Gad+a l+ eaa+ + r++ + ++++e
  MMETSP1174-20130828|38556_1 194 EEKLDDVGYDDIGGCRRQMAQIREMIELpLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNG--E-VERRIVSQMLTLMDGLKARANVVVIGATNRPNSIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESIARETHGFVGADMAALCTEAAMQCIREKMDLIDIEE 433
                  45567899*******************87*******************************************************************************************9433..2.3336789***************************************************************************************************999988765 PP

  == domain 2    score: 248.6 bits;  conditional E-value: 1.9e-76
    TIGR01241  35 ifslgkskaklleee...kvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarkn.kkevtlkeleeavdr 295
                   f+lg+s+   l+e     +++t++d+ G++ +k+el e+v++ + +p+kf+k+G    +Gvl++GpPG GktL+akava e +  f+s+ G +++ m+ G   + vrD+fe+a+ +aPc++f De+D++ ++r+ g  g+g    ++ +nq+L+e+DG +++++v v+ atnrpd++D+aL+rPGr+D+ + +  Pdl  r +ilk  ++k  ++++vdl+ va +t  ++Gadl  ++  aa la r+   + ++ + l e  d 
  MMETSP1174-20130828|38556_1 452 QFALGQSNPSSLRETvveVPNTTWDDIGGLKSVKNELRELVQYpVEHPEKFEKFGMSPSRGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARAAAPCVLFFDELDSIASARASGgGGDGGGAADRVINQILTEIDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDLDSRINILKACLRKSPVSKDVDLNYVAAHTDKYTGADLTEICQRAAKLAIRESiARDMERHRLAEDNDD 718
                  67888888776666522267889********************7799*****************************************************************************************9677788999*******************************************************************************************************972455666666666655 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   2.5e+02     120     157 ..      25      64 ..      18     102 .. 0.73
   2 !  196.4   0.4   1.3e-60   1.8e-58     175     432 ..     196     441 ..     189     449 .. 0.84
   3 !  210.4   0.0   7.4e-65     1e-62     165     387 ..     460     669 ..     441     681 .. 0.89
   4 ?    3.5   0.1     0.037       5.1     435     480 ..     679     721 ..     670     732 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.8
    TIGR03689 120 ralvvd.kadeervvklagalaee.klraGdsllvdlkag 157
                  r++v + ++d++ vv+l+ + ++e +l  Gd++l+  k g
  MMETSP1174-20130828|38556_1  25 RLIVDEiTNDDNSVVSLSPKKMDElQLFRGDTVLLKGKKG 64 
                  5555442356778888887777765788888888776654 PP

  == domain 2    score: 196.4 bits;  conditional E-value: 1.3e-60
    TIGR03689 175 evPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl......aeadgdreaavealiekvvdalyareeenelvevteadgstevl 432
                     dv+y+diGG  +q+ qir+ +elP+ h+ l++  ++kpP+GvllyGPPG+Gktlia+avan             ++f+ i GPe+++k  Ge+e ++r  fe a    +++ P ++f+de+ds+   r      +ve  +v q+l+ +dG+++  nv+viGa+nr + idPa+ r Gr+d  i i+ Pd+++  +i+  +   ++ l+ed+       e++g   a+++al +++  a+ + +e+ +l++++e+  + e l
  MMETSP1174-20130828|38556_1 196 KLDDVGYDDIGGCRRQMAQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANET----------GAFFFLINGPEIMSKMAGESESNLRKAFEEA----EKNAPAIIFIDEIDSIAPKRDK-TNGEVERRIVSQMLTLMDGLKARANVVVIGATNRPNSIDPALRRFGRFDREIDIGVPDENGRLEIFRIHT-RNMKLDEDVdpesiaRETHGFVGADMAALCTEA--AMQCIREKMDLIDIEEETIDAELL 441
                  567************************************************************954..........469999*******************888765....5667************999976.5789*************************************************************98774.344554444111111355666777777776665..455556777777777776666655 PP

  == domain 3    score: 210.4 bits;  conditional E-value: 7.4e-65
    TIGR03689 165 kseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssd...vettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                   s+ +e v  evP+ t++diGGl+s  +++r+ v+ P  h+e ++++++ p +Gvl+yGPPGcGktl+akavan            ++ f+++kGPell  + Ge+e ++r +fe+ar +a    P v+ffde+ds+  +r sG   d       v+ q+l+e+dGv + +nv viGa+nr d+idPa++rPGrld  i i  Pd ++  +il+  l ++ P+++d
  MMETSP1174-20130828|38556_1 460 PSSLRETV-VEVPNTTWDDIGGLKSVKNELRELVQYPVEHPEKFEKFGMSPSRGVLFYGPPGCGKTLMAKAVANE----------CQANFISVKGPELLTMWFGESEANVRDVFEKARAAA----PCVLFFDELDSIASARASGGGGDgggAADRVINQILTEIDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDLDSRINILKACLRKS-PVSKD 669
                  55555555.58**************************************************************95..........3568*****************************876....****************99988883335678**********************************************************9998765.66444 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.037
    TIGR03689 435 kdlvsGamlanivdrakkaaikdeleggqkglraehllaavadevr 480
                   d  +Ga l +i +ra k ai+++++      + ++l++  +de++
  MMETSP1174-20130828|38556_1 679 TDKYTGADLTEICQRAAKLAIRESIARDM---ERHRLAEDNDDEMA 721
                  67789*******************97643...44445555555554 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   8.7e-12   1.2e-09     313     429 ..     238     353 ..     199     377 .. 0.76
   2 !   29.4   0.0   4.7e-10   6.4e-08     303     423 ..     504     623 ..     465     633 .. 0.72

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 8.7e-12
    TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG.lgvlrkpevrEvsRadligeyigeseaktnelidka...LggvlFlDEayaLvekrdgakddfGleaidtLLarlE..ndRdrlvviiAGYe.kdlD 429
                  + +ll GPPG Gkt iAr+va+     + +++ pe++        ++  gese +  +  ++a      ++F+DE+ ++  krd+++ ++   ++ ++L  ++    R ++vvi+A  + + +D
  MMETSP1174-20130828|38556_1 238 RGVLLYGPPGSGKTLIARAVANETGAfFFLINGPEIM--------SKMAGESESNLRKAFEEAeknAPAIIFIDEIDSIAPKRDKTNGEVERRIVSQMLTLMDglKARANVVVIGATNRpNSID 353
                  56899****************9876515677788775........5556666666666555541116789********************************9445788999999976523455 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 4.7e-10
    TIGR03922 303 erGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek..rdgakddfGle..aidtLLarlEn..dRdrlvviiAG 423
                  + G++    s+ +l+ GPPG Gkt +A++va+         + + + v+  +l++ + gesea+  ++ +ka      vlF+DE+ ++ +     g +d  G++  +i+++L  ++    + ++ vi+A 
  MMETSP1174-20130828|38556_1 504 KFGMS---PSRGVLFYGPPGCGKTLMAKAVANEC-------QANFISVKGPELLTMWFGESEANVRDVFEKARAaapCVLFFDELDSIASAraSGGGGDGGGAAdrVINQILTEIDGvgAKKNVFVIGAT 623
                  55553...57899******************984.......678999***********************986522269*********988423345555555333799999998752245555566665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   4.5e-09   6.2e-07      33      98 ..     240     313 ..     234     404 .. 0.75
   2 !   22.5   0.0   7.8e-08   1.1e-05      33      67 ..     513     547 ..     474     584 .. 0.81
   3 ?   -3.6   0.0         7   9.5e+02     154     174 ..     677     697 ..     673     707 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 4.5e-09
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailtaleeg..dvlfiDeihrlskave 98 
                  vllyGPPG Gkt +a+ +a+e g+   +++gp++      e +++l  ++ + e++   ++fiDei  ++++ +
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEImskmagESESNLRKAFEEAEKNapAIIFIDEIDSIAPKRD 313
                  8*******************************984333333456788888776665336********9998755 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 7.8e-08
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                  vl+yGPPG Gkt +ak +a+e +++   ++gp+l 
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANECQANFISVKGPELL 547
                  8*******************************984 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 7
    TIGR00635 154 erlefYseeeleeivkrsakl 174
                  ++ + Y+ ++l+ei +r+akl
  MMETSP1174-20130828|38556_1 677 AHTDKYTGADLTEICQRAAKL 697
                  6778899********999975 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.8e-06    0.0013      34      63 ..     231     260 ..     220     263 .. 0.87
   2 ?    4.5   0.0     0.021       2.8     122     178 ..     290     351 ..     274     358 .. 0.74
   3 !   14.4   0.0     2e-05    0.0027      40      67 ..     510     537 ..     501     548 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.8e-06
    TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvlke 63 
                  +l  + p+ vl+yG++G+GKt+++++v +e
  MMETSP1174-20130828|38556_1 231 TLGVKPPRGVLLYGPPGSGKTLIARAVANE 260
                  566678999*****************9987 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.021
    TIGR02928 122 keleeredsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisndlkf 178
                  +e  e++  +ii +DEiD++  k+++ +      ++ +++ + +  +++ a+v vig +n  ++
  MMETSP1174-20130828|38556_1 290 EEA-EKNAPAIIFIDEIDSIApKRDKTNgeverrIVSQMLTLMDGLKAR-ANVVVIGATNRPNS 351
                  444.4455678889******86555544788998888888887777777.89999999998766 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 2e-05
    TIGR02928  40 psnvliyGktGtGKtavtkkvlkeleea 67 
                  ++ vl yG++G+GKt+++k+v +e +++
  MMETSP1174-20130828|38556_1 510 SRGVLFYGPPGCGKTLMAKAVANECQAN 537
                  4569*******************98875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-07   1.7e-05     120     201 ..     240     315 ..     236     338 .. 0.80
   2 !    9.0   0.0   0.00099      0.14     120     150 ..     513     543 ..     486     588 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.2e-07
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksena 201
                  +ll Gp GsGktl+a+++a+e    f + +   +  +   Ge   n l k    a  + ek    ii+ideid ia k +++
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKMAGESESN-LRK----AFEEAEKNAPAIIFIDEIDSIAPKRDKT 315
                  799*******************9999988887775.4567887666.455....55566777889***********887754 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00099
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiada 150
                  +l+ Gp G Gktl+a+++a+e +  f     
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANECQANFISVKG 543
                  7889****************99888755444 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012       1.6     485     516 ..     235     266 ..     214     278 .. 0.83
   2 !   10.4   0.1   0.00021     0.029     257     356 ..     276     379 ..     266     386 .. 0.68
   3 !    7.0   0.0    0.0022      0.29     486     516 ..     509     539 ..     503     547 .. 0.87
   4 ?    4.5   0.0     0.013       1.7     257     298 ..     549     590 ..     545     600 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.012
    TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                  kP    l +Gp G Gkt +a+++a+e g  + 
  MMETSP1174-20130828|38556_1 235 KPPRGVLLYGPPGSGKTLIARAVANETGAFFF 266
                  455556788****************9987665 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00021
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsld...asnlLk...PalasGkirciGsttyeeykkifekdkaLsr..rfq.kidveePskeetvki 356
                  k  G+ e  l++  ee ek+  ai+fiDei  i      ++g+++   +s++L       a  ++ +iG+t           d aL r  rf+ +id++ P ++  ++i
  MMETSP1174-20130828|38556_1 276 KMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVErriVSQMLTlmdGLKARANVVVIGATNR-----PNSIDPALRRfgRFDrEIDIGVPDENGRLEI 379
                  7789*****************************9998888888873334555531113334556777777743.....2233444444334431466666666655555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0022
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvell 516
                  P    lf+Gp G Gkt +ak++a+e   +++
  MMETSP1174-20130828|38556_1 509 PSRGVLFYGPPGCGKTLMAKAVANECQANFI 539
                  77789******************99887776 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.013
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsgg 298
                   + G+ e+ +++v e+ ++    +lf De+  i +a a++gg
  MMETSP1174-20130828|38556_1 549 MWFGESEANVRDVFEKARAAAPCVLFFDELDSIASARASGGG 590
                  577999*******************************99988 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0092       1.3      47      76 ..     237     266 ..     230     273 .. 0.88
   2 !   12.5   0.1   7.8e-05     0.011     238     286 ..     285     334 ..     271     343 .. 0.77
   3 !    5.9   0.0     0.008       1.1      49     101 ..     512     562 ..     506     568 .. 0.78
   4 ?   -1.4   0.0       1.3   1.8e+02     244     265 ..     566     587 ..     553     610 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0092
    TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfi 76 
                  P+ +l+ G+ G Gkt iar +a  ++a f 
  MMETSP1174-20130828|38556_1 237 PRGVLLYGPPGSGKTLIARAVANETGAFFF 266
                  889*******************98888776 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 7.8e-05
    TIGR00390 238 kqeavdrvees..GiifideidkiakkgessgadvsreGvqrdllPiveGs 286
                   ++a +++e++   iifideid ia k ++++ +v r  v   +l +++G 
  MMETSP1174-20130828|38556_1 285 LRKAFEEAEKNapAIIFIDEIDSIAPKRDKTNGEVERRIVS-QMLTLMDGL 334
                  46788888887336**************9999999998775.577777775 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.008
    TIGR00390  49 nilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlv 101
                   +l  G+ G Gkt +a+ +a   +a fi v       + + G + e+ vrd+ 
  MMETSP1174-20130828|38556_1 512 GVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWF-G-ESEANVRDVF 562
                  58999************************98776655544.2.4455566665 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 1.3
    TIGR00390 244 rveesGiifideidkiakkges 265
                  r+    ++f de+d ia   +s
  MMETSP1174-20130828|38556_1 566 RAAAPCVLFFDELDSIASARAS 587
                  5566789*********987644 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00016     0.022      22      57 ..     238     273 ..     232     291 .. 0.85
   2 !   13.9   0.0   4.6e-05    0.0062      21      58 ..     510     547 ..     499     556 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
    TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGdae 57 
                  + v l GP G+Gkt +a++va++ +    l+nG + 
  MMETSP1174-20130828|38556_1 238 RGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEI 273
                  568899*******************99999999764 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 4.6e-05
    TIGR02640  21 gypvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                   + v + GP G+Gkt +a +va++ +   + ++G + l
  MMETSP1174-20130828|38556_1 510 SRGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELL 547
                  57799*******************99999999987655 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0019      0.26      46     127 ..     241     318 ..     233     357 .. 0.78
   2 !   16.9   0.0   4.1e-06   0.00056       8     134 ..     478     601 ..     472     625 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0019
    TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfGk 127
                  ++ G PG+Gkt +ar +a+    +  l  G  i  +   + Ge      +k+ e  +k    ++fide  s+a   +k  G 
  MMETSP1174-20130828|38556_1 241 LLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK---MAGESES-NLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGE 318
                  67799**************99999999999988654...5677654.45777888888899999****99999888887763 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 4.1e-06
    TIGR02881   8 lvGleevkelikeiyalilinekr.keeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...Gvlfideaysla....rGGekdfGkeaidtlv 134
                  + Gl+ vk+ ++e+  + + + ++ ++ g+  ++    ++f G PG Gkt +a+ +a+         + ++i v+  +l+  + G++  ++r+v +ka      vlf de  s+a     GG  d G  a d ++
  MMETSP1174-20130828|38556_1 478 IGGLKSVKNELRELVQYPVEHPEKfEKFGMSPSR---GVLFYGPPGCGKTLMAKAVANEC-------QANFISVKGPELLTMWFGESEANVRDVFEKARAaapCVLFFDELDSIAsaraSGGGGDGG-GAADRVI 601
                  56999********999876554440444555555...5679*************999755.......46788888899***************99987642227******87775221157777755.3445555 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00014     0.019     357     383 ..     241     267 ..     237     318 .. 0.86
   2 !   12.6   0.0   5.4e-05    0.0074     356     383 ..     513     540 ..     477     543 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
    TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvr 383
                   l+GPPG GKt +a+++A+ ++  f+ 
  MMETSP1174-20130828|38556_1 241 LLYGPPGSGKTLIARAVANETGAFFFL 267
                  69****************999888875 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 5.4e-05
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvr 383
                  + ++GPPG GKt +ak++A+  + +f+ 
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANECQANFIS 540
                  689*****************99999975 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.7e-05    0.0092     173     198 ..     235     260 ..     215     264 .. 0.85
   2 ?    2.4   0.0     0.066       9.1     320     342 ..     336     357 ..     320     366 .. 0.86
   3 !    7.1   0.0    0.0027      0.36     177     199 ..     512     534 ..     502     541 .. 0.85
   4 ?   -1.5   0.0         1   1.4e+02     308     355 ..     601     649 ..     596     675 .. 0.71
   5 ?   -1.3   0.1      0.87   1.2e+02      51     109 ..     666     723 ..     627     726 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.7e-05
    TIGR02903 173 pfpqhiilyGppGvGkttaarlalee 198
                    p+ ++lyGppG Gkt +ar + +e
  MMETSP1174-20130828|38556_1 235 KPPRGVLLYGPPGSGKTLIARAVANE 260
                  55899****************98776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.066
    TIGR02903 320 apadfvliGattrdpeeinpalr 342
                  a a+ v+iGat r p+ i+palr
  MMETSP1174-20130828|38556_1 336 ARANVVVIGATNR-PNSIDPALR 357
                  7899******876.99******9 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0027
    TIGR02903 177 hiilyGppGvGkttaarlaleea 199
                   +++yGppG Gkt +a+ + +e+
  MMETSP1174-20130828|38556_1 512 GVLFYGPPGCGKTLMAKAVANEC 534
                  6899************9988776 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 1
    TIGR02903 308 vpkyikklfekGapadfvliGattrdpeeinpalr..srcaevffepltp 355
                  + + + ++   Ga  +  +iGat r p+ i+pal    r  ++ + p+  
  MMETSP1174-20130828|38556_1 601 INQILTEIDGVGAKKNVFVIGATNR-PDIIDPALMrpGRLDQLIYIPMPD 649
                  5566666667799999999**9876.999***995224666666666555 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.87
    TIGR02903  51 vledkglevvpaakelaeiledledaiadilakrtveeeierkvek.klverqekyleei 109
                  v++d  l+ v a+ ++    + +   i++ +ak  ++e+i r++e+ +l e +++ + ++
  MMETSP1174-20130828|38556_1 666 VSKDVDLNYVAAHTDKYTGADLT--EICQRAAKLAIRESIARDMERhRLAEDNDDEMADV 723
                  56677777777777766554433..48889999999999999998636788888877776 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1    0.0002     0.027      85     109 ..     236     260 ..     226     264 .. 0.85
   2 ?   -1.8   0.0       1.4   1.9e+02     232     252 ..     338     357 ..     329     361 .. 0.78
   3 !    8.7   0.0   0.00092      0.13      88     115 ..     512     539 ..     505     548 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0002
    TIGR02902  85 npqhviiyGppGvGktaaarlvlee 109
                   p+ v++yGppG Gkt  ar v +e
  MMETSP1174-20130828|38556_1 236 PPRGVLLYGPPGSGKTLIARAVANE 260
                  5899****************99876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
    TIGR02902 232 adfrliGattrkpeeippalr 252
                  a+  +iGat  +p+ i+palr
  MMETSP1174-20130828|38556_1 338 ANVVVIGATN-RPNSIDPALR 357
                  5667889876.5********9 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00092
    TIGR02902  88 hviiyGppGvGktaaarlvleeakksaa 115
                   v+ yGppG Gkt  a+ v +e + +  
  MMETSP1174-20130828|38556_1 512 GVLFYGPPGCGKTLMAKAVANECQANFI 539
                  5899**************9999887655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0012      0.16       2      24 ..     240     262 ..     239     286 .. 0.90
   2 !   12.0   0.0   0.00018     0.025       2      29 ..     513     540 ..     512     544 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklg 24 
                  ++l GpPGsGK  +a+ +a+++g
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAVANETG 262
                  6899***************9987 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00018
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                  +++ GpPG+GK  +ak +a++++   is
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANECQANFIS 540
                  789********************99998 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00028     0.038       4      26 ..     241     263 ..     239     330 .. 0.72
   2 !    9.7   0.0    0.0012      0.17       6      30 ..     516     540 ..     512     544 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00028
    TIGR02173   4 visGpPGsGkttvakilaeklsl 26 
                   + GpPGsGkt +a+ +a++ + 
  MMETSP1174-20130828|38556_1 241 LLYGPPGSGKTLIARAVANETGA 263
                  567***************99874 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0012
    TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                   GpPG Gkt +ak +a++ + ++is
  MMETSP1174-20130828|38556_1 516 YGPPGCGKTLMAKAVANECQANFIS 540
                  69*****************999998 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.006      0.81      14      37 ..     237     260 ..     230     265 .. 0.89
   2 ?    1.5   0.0      0.31        42     106     141 ..     275     310 ..     263     311 .. 0.86
   3 !    9.8   0.0   0.00087      0.12      16      39 ..     512     535 ..     506     544 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.006
    TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                  +  +L++Gp+G+Gk+ +a+a+a++
  MMETSP1174-20130828|38556_1 237 PRGVLLYGPPGSGKTLIARAVANE 260
                  6789*****************976 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.31
    TIGR00678 106 ealneaaaNaLLKtLEEPpektlflLisespekllp 141
                  +++  +++  L K +EE+++++ +++  ++ +++ p
  MMETSP1174-20130828|38556_1 275 SKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAP 310
                  5788899999************99999999888875 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00087
    TIGR00678  16 AlLfaGpeGvGkealaealakall 39 
                   +Lf+Gp+G+Gk+ +a+a+a++  
  MMETSP1174-20130828|38556_1 512 GVLFYGPPGCGKTLMAKAVANECQ 535
                  68*****************98754 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00027     0.037     140     291 ..     240     391 ..     233     424 .. 0.81
   2 !    6.2   0.0    0.0072      0.98     140     164 ..     513     537 ..     503     542 .. 0.87
   3 ?   -1.1   0.0       1.2   1.7e+02     266     300 ..     645     678 ..     642     683 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00027
    TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyrsvD.lLLiDDiqflagke.........ktqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpe 291
                  +++yG  G GKT + +A++ne+ +       + ++  + ++++    +++  ++f+e  +++  ++ iD i  +a k+         ++  +++ +++ l  +   +v+ + + p++++    R+  Rf+    +di  pd + rl+I++  ++++kl+  e
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSKMAGESESNLRKAFEEAEKNAPaIIFIDEIDSIAPKRdktngeverRIVSQMLTLMDGLKARANVVVIGATNRPNSIDPALRRF-GRFDR--EIDIGVPDENGRLEIFRIHTRNMKLD--E 391
                  78*****************977655.....799************************99988615679******98753222222223445678889999999999************9877775.79998..579999*********98666655554..3 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0072
    TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkk 164
                  +++yG  G GKT + +A++ne+ ++
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANECQAN 537
                  789*****************98876 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 1.2
    TIGR00362 266 ieppdletrlaILkkkaeeeklelpeevlefiakk 300
                  i  pdl++r++ILk  ++++ ++ + + l+++a +
  MMETSP1174-20130828|38556_1 645 IPMPDLDSRINILKACLRKSPVSKDVD-LNYVAAH 678
                  789***********9999888776554.4566555 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0036      0.49       2      29 ..     241     270 ..     240     281 .. 0.79
   2 !   10.9   0.0   0.00045     0.062       3      28 ..     515     540 ..     513     548 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0036
    TIGR01313   2 vlmGvaGsGkstiakelakklgakf..ieG 29 
                  +l G+ GsGk+ ia+++a++ ga f  i+G
  MMETSP1174-20130828|38556_1 241 LLYGPPGSGKTLIARAVANETGAFFflING 270
                  578*****************9965422566 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00045
    TIGR01313   3 lmGvaGsGkstiakelakklgakfie 28 
                    G+ G+Gk+ +ak++a++ +a+fi 
  MMETSP1174-20130828|38556_1 515 FYGPPGCGKTLMAKAVANECQANFIS 540
                  56999*****************9984 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00092      0.13      36     108 ..     235     314 ..     225     393 .. 0.68
   2 !    8.6   0.0    0.0019      0.27      39      67 ..     511     539 ..     496     587 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00092
    TIGR03420  36 kaerllylwGesgsGksHLLqAacaaaee.....agksaiylplkelaqllvevlegleq..aelvalDdvealagerew 108
                  k  r + l+G++gsGk+ + +A+++++ +     +g +++   + e ++ l +++e++e+   +++ +D+++++a +r++
  MMETSP1174-20130828|38556_1 235 KPPRGVLLYGPPGSGKTLIARAVANETGAfffliNGPEIMSKMAGESESNLRKAFEEAEKnaPAIIFIDEIDSIAPKRDK 314
                  5667789*****************98754222214444444334444444447777665411468889999999988755 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0019
    TIGR03420  39 rllylwGesgsGksHLLqAacaaaeeagk 67 
                  r + ++G++g+Gk+ + +A++++++++  
  MMETSP1174-20130828|38556_1 511 RGVLFYGPPGCGKTLMAKAVANECQANFI 539
                  66789*****************9987633 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00098      0.13     214     231 ..     240     257 ..     234     262 .. 0.89
   2 !    7.9   0.0    0.0015      0.21     213     231 ..     512     530 ..     505     534 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00098
    TIGR00368 214 llllGPPGsGktllakrl 231
                  +ll GPPGsGktl+a+ +
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAV 257
                  799***********9976 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0015
    TIGR00368 213 nllllGPPGsGktllakrl 231
                   +l+ GPPG Gktl+ak +
  MMETSP1174-20130828|38556_1 512 GVLFYGPPGCGKTLMAKAV 530
                  589*************986 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.29        39     594     617 ..     236     259 ..     233     266 .. 0.81
   2 !    5.9   0.0    0.0052      0.71     244     310 ..     275     347 ..     267     381 .. 0.80
   3 ?    4.5   0.0     0.014       1.9     594     617 ..     509     532 ..     505     538 .. 0.89
   4 ?    0.8   0.0      0.18        25     248     346 ..     552     658 ..     548     677 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.29
    TIGR03346 594 PigsflflGptGvGktelakalae 617
                  P    l+ Gp G Gkt +a+a+a+
  MMETSP1174-20130828|38556_1 236 PPRGVLLYGPPGSGKTLIARAVAN 259
                  445567789999999999999996 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0052
    TIGR03346 244 akyrGefeerlkavlkevekseGeiilfidelhtlvG.aGkaeGald...agnllkPa...larGelhciGatt 310
                  +k  Ge e  l+  ++e ek+    i+fide+  +     k++G ++    +++l  +    ar ++ +iGat 
  MMETSP1174-20130828|38556_1 275 SKMAGESESNLRKAFEEAEKNA-PAIIFIDEIDSIAPkRDKTNGEVErriVSQMLTLMdglKARANVVVIGATN 347
                  6899*************98876.6678*******9862579999987444577776443326999999999995 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.014
    TIGR03346 594 PigsflflGptGvGktelakalae 617
                  P    lf Gp G Gkt +aka+a+
  MMETSP1174-20130828|38556_1 509 PSRGVLFYGPPGCGKTLMAKAVAN 532
                  67778*****************97 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.18
    TIGR03346 248 GefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldag....nllkPal.......arGelhciGattldeyrkyiekdaaler..rf.qkvlvdePsvedtisilr 346
                  Ge e  ++ v+++ ++     +lf del  +  a ++ G  d g     ++  +l       a+ ++ +iGat   +    i  d+al r  r+ q +++  P++++ i il+
  MMETSP1174-20130828|38556_1 552 GESEANVRDVFEKARA-AAPCVLFFDELDSIASARASGGGGDGGgaadRVINQILteidgvgAKKNVFVIGATNRPD----I-IDPALMRpgRLdQLIYIPMPDLDSRINILK 658
                  7888888888877655.45889*********9886666655543111133333321111111444445555553222....2.355555433332455566666666666665 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0     0.002      0.27      34      59 ..     234     259 ..     229     267 .. 0.89
   2 !    5.7   0.0     0.007      0.96      37      59 ..     510     532 ..     497     540 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.002
    TIGR00764  34 akqkrnvlliGePGvGksmlakamae 59 
                  +k  r vll G PG Gk+++a+a+a+
  MMETSP1174-20130828|38556_1 234 VKPPRGVLLYGPPGSGKTLIARAVAN 259
                  566799******************96 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.007
    TIGR00764  37 krnvlliGePGvGksmlakamae 59 
                   r vl+ G PG Gk+++aka+a+
  MMETSP1174-20130828|38556_1 510 SRGVLFYGPPGCGKTLMAKAVAN 532
                  699******************96 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13        18     594     619 ..     236     260 ..     207     265 .. 0.88
   2 ?    4.2   0.0     0.016       2.2     260     291 ..     277     307 ..     273     381 .. 0.93
   3 ?   -0.9   0.0      0.54        74     599     619 ..     513     533 ..     506     536 .. 0.84
   4 ?    4.5   0.0     0.013       1.8     262     304 ..     552     593 ..     549     602 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.13
    TIGR03345 594 kPlgvFllvGpsGvGktetalalAel 619
                   P gv ll Gp G Gkt  a a+A++
  MMETSP1174-20130828|38556_1 236 PPRGV-LLYGPPGSGKTLIARAVANE 260
                  46666.789*************9985 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.016
    TIGR03345 260 vkGeFekRlksvidevkasekpiilFiDeaHt 291
                  + Ge e+ l++  +e+++ ++p i+FiDe+ +
  MMETSP1174-20130828|38556_1 277 MAGESESNLRKAFEEAEK-NAPAIIFIDEIDS 307
                  88*************987.579999****976 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.54
    TIGR03345 599 FllvGpsGvGktetalalAel 619
                   l+ Gp G Gkt  a a+A++
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVANE 533
                  5899**************986 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.013
    TIGR03345 262 GeFekRlksvidevkasekpiilFiDeaHtliGaGgqaGqgDa 304
                  Ge e+ +++v ++++ +++p +lF De  ++  a ++ G+gD 
  MMETSP1174-20130828|38556_1 552 GESEANVRDVFEKAR-AAAPCVLFFDELDSIASARASGGGGDG 593
                  899999****99876.568************999998888884 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.029         4      39      58 ..     240     259 ..     234     261 .. 0.88
   2 !    7.4   0.0    0.0035      0.48      39      58 ..     513     532 ..     509     540 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.029
    TIGR02397  39 yLfsGprGvGKTsiArilAk 58 
                   L++Gp G GKT iAr +A+
  MMETSP1174-20130828|38556_1 240 VLLYGPPGSGKTLIARAVAN 259
                  699*************9985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0035
    TIGR02397  39 yLfsGprGvGKTsiArilAk 58 
                   Lf+Gp G+GKT +A+ +A+
  MMETSP1174-20130828|38556_1 513 VLFYGPPGCGKTLMAKAVAN 532
                  69**************9986 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.029         4     175     212 ..     213     251 ..     203     255 .. 0.70
   2 ?    6.0   0.0     0.017       2.3     158     212 ..     464     524 ..     419     534 .. 0.72
   3 ?   -1.7   0.4       3.5   4.8e+02      68     132 ..     714     778 ..     678     800 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.029
    TIGR03499 175 eklreaLekklsvkkeedei.lekggviaLvGptGvGKT 212
                  +++re++e  l++ +  +++  + ++ ++L Gp+G+GKT
  MMETSP1174-20130828|38556_1 213 AQIREMIELPLRHPTLFKTLgVKPPRGVLLYGPPGSGKT 251
                  5556666666655554444314556789**********9 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.017
    TIGR03499 158 relleklke.kedaeeareklreaLekklsvkke.....edeilekggviaLvGptGvGKT 212
                  re + ++++ + d+    +++++ L++ +++  e     e+  ++  + +++ Gp+G GKT
  MMETSP1174-20130828|38556_1 464 RETVVEVPNtTWDDIGGLKSVKNELRELVQYPVEhpekfEKFGMSPSRGVLFYGPPGCGKT 524
                  55555555554445555555555555555554440000044455567789**********9 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3.5
    TIGR03499  68 kaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlsela 132
                  +  +++ ++ +++   +e  +++ ee+ +++ ++++++  ++ +++ + l++ +++l+++ +++a
  MMETSP1174-20130828|38556_1 714 EDNDDEMADVEEDDPVPEILPSHFEEAVRASRRSVSEASLSKYASFAQTLSQSRSALQSTGTSTA 778
                  33333333333333344444555555555555555555555557777777777777777766654 PP

>> TIGR03027  pepcterm_export: putative polysaccharide export protein, PEP-CTERM sytem-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.42        57     120     161 ..      55     102 ..      48     105 .. 0.75
   2 ?    4.5   0.0     0.043       5.9      61      94 ..     319     352 ..     309     356 .. 0.89
   3 ?    3.2   0.0       0.1        14      67      94 ..     602     629 ..     595     633 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.42
    TIGR03027 120 kavivrkedgekkeisvrledllkdGdlt......anvelkpGDvviv 161
                  ++v+++ ++g+++   v l++  +dG++       +n+ ++ GD v+v
  MMETSP1174-20130828|38556_1  55 DTVLLKGKKGKQTVCIVLLDESQEDGNVKmnkvvrKNLRVRLGDCVTV 102
                  789999999***9********999999861111124566777777776 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.043
    TIGR03027  61 vrePvvtvvvtefigyraseqvrvvGavaePkal 94 
                  v+  +v+ ++t + g +a  +v v+Ga ++P+++
  MMETSP1174-20130828|38556_1 319 VERRIVSQMLTLMDGLKARANVVVIGATNRPNSI 352
                  6778999999*********************987 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.1
    TIGR03027  67 tvvvtefigyraseqvrvvGavaePkal 94 
                    ++te+ g  a+++v+v+Ga ++P ++
  MMETSP1174-20130828|38556_1 602 NQILTEIDGVGAKKNVFVIGATNRPDII 629
                  5566777788899************987 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.078        11     104     135 ..     231     262 ..     227     285 .. 0.87
   2 ?    6.3   0.0    0.0046      0.63     110     137 ..     510     537 ..     503     566 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.078
    TIGR00602 104 vLeskkkriLLitGPsGCgKsTvikiLsKelg 135
                   L +k+ r  L+ GP+G gK+ + +  + e g
  MMETSP1174-20130828|38556_1 231 TLGVKPPRGVLLYGPPGSGKTLIARAVANETG 262
                  577888898899*********99998888876 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0046
    TIGR00602 110 kriLLitGPsGCgKsTvikiLsKelgik 137
                   r  L  GP+GCgK+   k  + e   +
  MMETSP1174-20130828|38556_1 510 SRGVLFYGPPGCGKTLMAKAVANECQAN 537
                  5667899********9999998886655 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.02       2.8      17      36 ..     242     261 ..     235     268 .. 0.85
   2 ?   -0.3   0.0       1.3   1.8e+02      87     144 ..     286     343 ..     276     351 .. 0.57
   3 ?    3.5   0.0     0.087        12      17      39 ..     515     537 ..     510     543 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.02
    TIGR02237  17 iyGpggsGKtnialilavea 36 
                  +yGp+gsGKt ia  +a e+
  MMETSP1174-20130828|38556_1 242 LYGPPGSGKTLIARAVANET 261
                  7**********998887665 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.3
    TIGR02237  87 qkaskliekekadlvvvDsltalyRleksddrislklelarqlslL.lslArkkdlavv 144
                  +ka++ +ek+   ++ +D + ++   ++++ + ++++ + +q+ +L   l ++ ++ v+
  MMETSP1174-20130828|38556_1 286 RKAFEEAEKNAPAIIFIDEIDSIAP-KRDKTNGEVERRIVSQMLTLmDGLKARANVVVI 343
                  5555555565556666666665543.333333556666666654441456666666655 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.087
    TIGR02237  17 iyGpggsGKtnialilaveaaek 39 
                  +yGp+g GKt +a  +a e +++
  MMETSP1174-20130828|38556_1 515 FYGPPGCGKTLMAKAVANECQAN 537
                  7*********9987777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      213  (0.0519259); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        30  (0.00731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 1.16u 0.18s 00:00:01.34 Elapsed: 00:00:00.83
# Mc/sec: 1275.36
//
Query:       MMETSP1174-20130828|38561_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1174-20130828|38564_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 606.17
//
Query:       MMETSP1174-20130828|38563_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-31  107.4   0.0    1.6e-31  107.2   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.2e-07   27.5   0.0    8.5e-07   26.1   0.0    1.6  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      4e-06   23.7   0.0    6.2e-06   23.1   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    8.3e-05   19.7   0.1     0.0036   14.3   0.0    2.0  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00025   18.5   0.1       0.17    9.2   0.0    2.2  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0019   15.0   0.1      0.049   10.4   0.0    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0037   14.1   0.2      0.013   12.3   0.0    1.7  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0087   13.0   0.1      0.027   11.4   0.1    1.8  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.031   11.0   0.0      0.038   10.7   0.0    1.1  1  TIGR03257 met_CoM_red_bet: methyl-coenzyme M reductase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   3.4e-34   1.6e-31       2     159 ..      12     167 ..      11     172 .. 0.96

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 3.4e-34
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklf 159
                  +e+k+v++G+ +vGKs+L  ++++n+ ++   +p+++ +++++++++++ ++k++++DTaGqe+++ + ++y++ +++ + v+di+ + ++++     +  e++++ + ++++i +++nK+Dl +  +++t+ ++  a++ ++++ e+sa+t +n+d++f
  MMETSP1174-20130828|38563_1  12 REVKVVLLGDTGVGKSSLVLRFITNE-FKPFQEPTIGASFMSKLFMIENNPIKFQIWDTAGQEKYKSLAPMYYKGAAAAIVVYDITKM-DSFRTLQ-TWINELQEQGP-ENIVIAIAGNKCDLDSerEVETEAARSYAESIGASFLETSAKTKANVDEIF 167
                  689***********************.999999*******************************************************.8888777.***********.************************************************998 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.9e-09   8.5e-07     173     345 ..      11     173 ..       3     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 1.9e-09
    TIGR03594 173 eepikiaiiGrpNvGKStLvNallgee.rvivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivv..NKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikev 345
                  ++++k+ ++G   vGKS+Lv +++ +e +   +++ G    s    +e +  k+++ DTAG  + k+++     + ++ +      a +v++ +   +++    + i +l ++    +vi++  NK+Dl     + +e+++e  ++++    a ++ +SA+t+ +v++++  i + 
  MMETSP1174-20130828|38563_1  11 AREVKVVLLGDTGVGKSSLVLRFITNEfKPFQEPTIGASFMSKLFMIENNPIKFQIWDTAGQEKYKSLAP----MYYKGAA-----AAIVVYDITKMDSFRTLQTWINELQEQGPENIVIAIagNKCDLD----SEREVETEAARSYAESIGASFLETSAKTKANVDEIFVDISKN 173
                  4579****************997765537788888888888888888889999********888877753....3333333.....44555555566788888888988888887888776555****99....666788888888889999******************998875 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-08   6.2e-06       3     171 ..       9     178 ..       7     189 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.4e-08
    TIGR03918   3 pkaerlhialfGrrNaGKSsliNaltgqdv.aivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkek...kipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeea 171
                  ++a  ++++l+G + +GKSsl+  ++ ++       + G+   +    +E  p+    + DTaG +   +L  + ++ + +++   d++   +d+     ++ +++++el+e+   +i + ++ nk+dl +e++     ++++ ++ + +++ +sak+k +++e+   ++++lp+  
  MMETSP1174-20130828|38563_1   9 TRAREVKVVLLGDTGVGKSSLVLRFITNEFkPFQEPTIGASFMSKLFMIENNPI-KFQIWDTAGQEKYKSLAPMYYKGAAAAIVVYDITK--MDSF----RTLQTWINELQEQgpeNIVIAIAGNKCDLDSEREVeteaARSYAESIGASFLETSAKTKANVDEIFVDISKNLPTAE 178
                  5778899**************877666665055555666655444444454554.34679**************9999988887777643..3433....344555555555411167777788****9987765444466777888999*********************999864 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     8e-06    0.0036     155     236 ..      13      93 ..       7     104 .. 0.69
   2 !    4.5   0.0    0.0075       3.4      72     152 ..      98     173 ..      82     186 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 8e-06
    TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdlkkivpk 236
                  + +v+++G t VGKSsl+ + ++++ +  +  t+   +   l +ie +   + ++ Dt+G  + +++a +  k  +  iv++
  MMETSP1174-20130828|38563_1  13 EVKVVLLGDTGVGKSSLVLRFITNEFKPFQEPTIGASFMSKLFMIENNP-IKFQIWDTAGQEKYKSLAPMYYKGAAAAIVVY 93 
                  5899*****************9877665444555444444555554443.47899999998888888777666666666655 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0075
    TIGR03597  72 vDifdlegslikelkrfvkenkvllv.vNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikka 152
                  +D f   +++i+el++   en v+ + +NK dl  ++  +++ ++   +++  + l+      +sak+k +++e++  i+k+
  MMETSP1174-20130828|38563_1  98 MDSFRTLQTWINELQEQGPENIVIAIaGNKCDLDSEREVETEAARSYAESIGASFLE------TSAKTKANVDEIFVDISKN 173
                  3556666899*****9999999887647****9666555544444444444333333......7777777777777776665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00037      0.17     125     141 ..      16      32 ..       9      47 .. 0.82
   2 !    7.4   0.0    0.0014      0.62      68     122 ..     117     172 ..      91     176 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00037
    TIGR00157 125 svfaGqSGVGKSSLiNl 141
                   v+ G  GVGKSSL+ +
  MMETSP1174-20130828|38563_1  16 VVLLGDTGVGKSSLVLR 32 
                  6899**********865 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0014
    TIGR00157  68 kniepiivlnkkdlleeedaekeqleel.knlgYkvllvsvkneegleelkeklkk 122
                  +ni + i  nk dl +e ++e e +  + +++g + l +s+k++ +++e++  ++k
  MMETSP1174-20130828|38563_1 117 ENIVIAIAGNKCDLDSEREVETEAARSYaESIGASFLETSAKTKANVDEIFVDISK 172
                  577888888999*999999997777777367*****************99877665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.023        10     187     211 ..      11      35 ..       6      56 .. 0.83
   2 !   10.4   0.0   0.00011     0.049     273     350 ..      90     173 ..      83     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.023
    TIGR03156 187 sevptvalvGYTNaGKstllnaltk 211
                  ++ ++v l G T  GKs+l+ ++++
  MMETSP1174-20130828|38563_1  11 AREVKVVLLGDTGVGKSSLVLRFIT 35 
                  5667899***********9876655 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00011
    TIGR03156 273 lhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk......eeavlvsAkkgegleeLleaieea 350
                  + v D+++ +  +++++  + L+e g e+i + ++ Nk+d+ +e+e+e++++++      ++ +  sAk++++++e+   i+++
  MMETSP1174-20130828|38563_1  90 IVVYDITKMDSFRTLQTWINELQEQGPENIVIAIAGNKCDLDSEREVETEAARSyaesigASFLETSAKTKANVDEIFVDISKN 173
                  779999999999999999999**********************999888877664444444478899*******9998888765 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   1.2e+02     160     176 ..      16      32 ..      14      39 .. 0.81
   2 !   12.3   0.0   2.9e-05     0.013     243     326 ..      93     172 ..      85     175 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.26
    TIGR02729 160 vglvGlpnaGkStllsa 176
                  v l+G   +GkS+l+ +
  MMETSP1174-20130828|38563_1  16 VVLLGDTGVGKSSLVLR 32 
                  7899*********9855 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.9e-05
    TIGR02729 243 idlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeele.ellkelkeelekkvlaisaltkegleellkklle 326
                   d++++   d +++l++  +eL++  +  ++    ++ nk+dl +e+e+e e++++ +e+++ ++l++sa tk +++e+  ++ +
  MMETSP1174-20130828|38563_1  93 YDITKM---DSFRTLQTWINELQEQGP--ENIVIAIAGNKCDLDSEREVEtEAARSYAESIGASFLETSAKTKANVDEIFVDISK 172
                  455555...778888888888888777..566677889******99666515666777777*****************9988876 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   5.9e-05     0.027     208     329 ..      12     131 ..       6     189 .. 0.55

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.9e-05
    TIGR00450 208 dglklaivGktNvGKSSLlNallkkd.raiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeliitlkkkkkdlllvl...NKiDLa 329
                    +k++++G+t vGKSSL+  +++++ +       G+        +e + i++++ DtAG  + ++    +  +        a +v+y +    +    ++ i++l+ +  + +++    NK DL 
  MMETSP1174-20130828|38563_1  12 REVKVVLLGDTGVGKSSLVLRFITNEfKPFQEPTIGASFMSKLFMIENNPIKFQIWDTAGQEKYKSL-APMYYKG-----AAAAIVVYDITKMDSFRTLQTWINELQEQGPENIVIAiagNKCDLD 131
                  569***************7666555427776666676655444555667788889999996555543.2222222.....2233444433333333333345555555444433332233777776 PP

>> TIGR03257  met_CoM_red_bet: methyl-coenzyme M reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.3e-05     0.038     215     316 ..      59     156 ..      41     174 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.3e-05
    TIGR03257 215 eqtalfemgdavgkferqhllglayqglnadnllydlvkangkdgtvgsvvesvveraiedgvikvdktalsgynlykaddvakwnayaaaglvaatlvncg 316
                  ++   f++ d+ g+ + + l  + y+g  a  ++yd+ k ++   t+ + ++++ e+  e+ vi++   a++  +l    +v+   a + a  + a ++++ 
  MMETSP1174-20130828|38563_1  59 NNPIKFQIWDTAGQEKYKSLAPMYYKGAAAAIVVYDITKMDSF-RTLQTWINELQEQGPENIVIAI---AGNKCDLDSEREVETEAARSYAESIGASFLETS 156
                  34445999999**999999*********************998.9******************999...566666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 592.48
//
Query:       MMETSP1174-20130828|38562_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1183.35
//
Query:       MMETSP1174-20130828|38566_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-20   69.2   0.1    8.1e-20   69.0   0.0    1.0  1  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit
    8.4e-08   30.0   0.0    9.5e-08   29.8   0.0    1.2  1  TIGR03166 alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon


Domain annotation for each model (and alignments):
>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   3.9e-23   8.1e-20       6     120 ..       5     123 ..       1     131 [. 0.87

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 3.9e-23
    TIGR01216   6 vvtpekeiysge.vesvilpgseGelGilpgHaplltalkpGvvrirkenk.eeeliavsgGflevepdkVt.iLadeavrakeideaeaeealeaaekklesae.dkkdlaeakkklk 120
                    +p+  iysg+ v +vi+pg+eGe G+ +gH p++++lkpGv+ i ++   e e++ ++gGf+  ++  Vt + a eav+++++d++++++ ++ a+ + +sa   + ++a+a+ +++
  MMETSP1174-20130828|38566_1   5 LNVPHMSIYSGKsVDKVIIPGVEGEYGVTEGHTPIISQLKPGVLSIVHDATsEPEKYFITGGFALTHDTSVTdVSAFEAVKLDDLDADAIKSGYASAQSAFASATaGSVEQATAQIEME 123
                  5569999**9744***********************************999899*************9999759999***************************965655555554444 PP

>> TIGR03166  alt_F1F0_F1_eps: alternate F1F0 ATPase, F1 subunit epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.7e-11   9.5e-08       2      88 ..       3      91 ..       2     124 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 4.7e-11
    TIGR03166  2 lkillPaevvldkekvtkivaEtesGsfgllprrvDlvaalvpgili..yetedggesyvAvdeGiLvkkgaevevsvreAvlgeeLee 88
                 l++++P + + + ++v+k++  + +G +g+ +++  ++++l+pg+l+  +  +++ e+y       L++  +   vs+ eAv+ ++L++
  MMETSP1174-20130828|38566_1  3 LNLNVPHMSIYSGKSVDKVIIPGVEGEYGVTEGHTPIISQLKPGVLSivHDATSEPEKYFITGGFALTHDTSVTDVSAFEAVKLDDLDA 91
                 7899*****************************************972244556777887666666677777778*******9999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 618.98
//
Query:       MMETSP1174-20130828|38565_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 994.04
//
Query:       MMETSP1174-20130828|38569_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   13.4   0.1     0.0095   11.8   0.0    1.7  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.3e-06    0.0095     131     157 ..       3      30 ..       1      43 [. 0.82
   2 !    0.8   0.0     0.005        21     127     148 ..      34      55 ..      25      56 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-06
    TIGR00870 131 gitalilAihkqnyeivklLl.ekgasv 157
                  g t+l +A++++n+ +v+ L  e  a+v
  MMETSP1174-20130828|38569_1   3 GTTPLYIAAENNNLDVVRYLAgEAHANV 30 
                  89****************9963345555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.005
    TIGR00870 127 eftkgitalilAihkqnyeivk 148
                  +   g  +l +A++  n+ +v+
  MMETSP1174-20130828|38569_1  34 RTDDGTAPLYIAAQYGNLDVVR 55 
                  45568889**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|38571_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 430.19
//
Query:       MMETSP1174-20130828|38568_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-168  558.1   0.1   4.8e-167  554.2   0.0    2.3  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
    1.6e-61  206.2   0.0    2.2e-61  205.8   0.0    1.1  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
    1.3e-58  196.5   0.1    5.7e-54  181.2   0.0    2.1  2  TIGR00973 leuA_bact: 2-isopropylmalate synthase
    2.9e-56  189.0   0.0    4.5e-56  188.4   0.0    1.2  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    6.8e-53  178.1   0.1    1.2e-52  177.2   0.1    1.4  1  TIGR02660 nifV_homocitr: homocitrate synthase
    6.9e-18   62.7   0.4    2.1e-14   51.3   0.4    2.4  2  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
      7e-16   55.7   0.8    1.4e-13   48.1   0.0    2.4  2  TIGR00970 leuA_yeast: 2-isopropylmalate synthase
    0.00023   17.5   0.1     0.0004   16.8   0.0    1.3  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
  ------ inclusion threshold ------
      0.016   10.5   1.5      0.022   10.0   0.4    1.5  2  TIGR01235 pyruv_carbox: pyruvate carboxylase


Domain annotation for each model (and alignments):
>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.2   0.0    1e-169  4.8e-167       2     522 ..      80     659 ..      79     663 .. 0.89

  Alignments for each domain:
  == domain 1    score: 554.2 bits;  conditional E-value: 1e-169
    TIGR00977   2 lklydttlrdGaqaeGvslsledkiriaeklddlGihyieGGwpganpkdvaffekvkeenlkna..kvvafsstrrpdkkveedkqlqalikaetpvvtifGkswdlhveealkttleenlkmiydtveylkrfadeviydaehffdGykanpeyalktlkvaekaGadwlvladtnGGtlpheieeitkkvkkrlk.dpqlGihahndsetavansllaveaGavqvqGtinGlGercGnanlcslipnlqlklgldviekenlkkltevarlvaeivnlaldenmpyvGesafahkGGvhvsavkrnpktyehidpelvGnkrkivvselaGksnvleklkelGi........e....i...dekspkvrkilkkikelekqGyhfeaaeaslellvrdalGkrkkyfevdgfrvliak....rrdeeslseaeatvrvsvegae..........................eltaaeGnGpvsaldralrkalekfypslkdlkltdykvrilnesaGtsaktrvli.....essdG.......krrwgtvGvseniieasytallesieyklrkdee 522
                  +++ydttlrdG+q e +sls+ dkiria++l ++G hyieGG+pg+npkd +ff +++ e   +a  kvvaf+strr +   ++d++l  +i a+t+ v i  k   +h+ e l+ +l+e l+m++++ve+lk++ +ev+ d ehf+dG+k+n+  a+ + ++a +aGad+lvl+dtnGG++p ei+e+t  +  ++k  + +G+hahnd e+avansl a ++Ga ++qGtinG+Ger+Gnanl s+ip lqlk+g   +   +l +lt+++ +v e++n  +   +p+vG+safahk G+hvsa+ r+p +y+hidp +vGn  +ivvs+l+G+sn+l k++e+G+             +   +e   k  +i ++ik  e +Gy +e+aeasl+l++r+a+   ++ f +  + v++       rd+  + +a    +v   +                             l++aeGnGpv+al  al kal   +p l d++l+dykvri+n   Gt a+trvli     ess         +r w+tvG  +n++ as  a+l++ ey l k +e
  MMETSP1174-20130828|38568_1  80 VYIYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRARTELPPEAweKVVAFGSTRRKHITCDKDENLAKIIAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEFLKSQEREVMVDLEHFYDGFKSNKTVAMLVCQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKgRALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGKTGVG-GQLDQLTSLSLFVNELMNHQPVPCAPFVGSSAFAHKAGLHVSAISRHPSSYQHIDPAVVGNTNRIVVSDLCGRSNILAKAEEFGLlepmnqegTmntcLasrEEWMSKSVEIADRIKSAESKGYTYEGAEASLDLMMRQAFDGYRQAFALVDYSVTVSDdstgSRDDGVFFDAGDAGKVGRTVGAtsvvnsasyaattratiklamdkahtLLEVAEGNGPVDALSVALSKALLPSFPILSDVHLIDYKVRIVNSYLGTAATTRVLItysysESSRDvsfpsfkDRSWTTVGAGSNLVSASLGAMLDGFEYFLVKHKE 659
                  89******************************************************998744333339************************************888******************************************************************************************834669******************************************************98886.68**********************************************************************************843222211011111100111234457999****************************************998652222578888888877666655444345778999***************999999****************************************************95555545432233333389***************************99876 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.0   4.8e-64   2.2e-61       1     331 [.      80     427 ..      80     460 .. 0.89

  Alignments for each domain:
  == domain 1    score: 205.8 bits;  conditional E-value: 4.8e-64
    TIGR02090   1 vkifdttlrdGeqtPGvsltveqkveiakkldelGvdvieaGfaiasegeaeaikkiaee...glnaeilslaralkkdi....d....kaidcgvdsihlviatsdlhlkyklkkskdevlekaveaveyak..ehGlivefsa.edatrtdidflikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk..lpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGeraGnaaleevvialkvlyg.vdvkikteklyevsrlvsklskvkvpknkaivGenafahesGihvdavienaltyePisPekvGkkrkiilGkhsGrkaveaklkelGie 331
                  v+i+dttlrdG q   +sl+v +k++iak+l e+G + ie G++ +  ++ae   +   e   +   +++++   ++k i    d    k i ++ +++ +v+  s  h+   l+ s de l +  e+ve+ k  e+ ++v++    d  ++++   + v ++a++agad + ++dt G  +P +++e+   ++++ k  + v+vh hnd  +avans+++  +Ga+ +++t+nG+Ger+Gna l  ++ +l+  +g   v  ++++l  +s +v++l++ +  +  + vG  afah +G+hv+a+ +++ +y+ i P +vG+  +i++   +Gr  + ak +e G+ 
  MMETSP1174-20130828|38568_1  80 VYIYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRARTElppEAWEKVVAFGSTRRKHItcdkDenlaKIIAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEFLKsqEREVMVDLEHfYDGFKSNKTVAMLVCQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKgrALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGkTGVGGQLDQLTSLSLFVNELMNHQPVPCAPFVGSSAFAHKAGLHVSAISRHPSSYQHIDPAVVGNTNRIVVSDLCGRSNILAKAEEFGLL 427
                  89************************************************99988776664434445799998777765533222222267899*************************************985567889988753699************************************************99889**************************************************9877625678899***************999999**********************************************************9974 PP

>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.0   1.3e-56   5.7e-54       2     367 ..      80     453 ..      79     471 .. 0.88
   2 !   13.4   0.0   9.6e-06    0.0044     401     465 ..     537     610 ..     520     646 .. 0.75

  Alignments for each domain:
  == domain 1    score: 181.2 bits;  conditional E-value: 1.3e-56
    TIGR00973   2 vlifdttlrdGeqapgasltveeklqiakalerlgvdiieaGfpvsskgdfeavqkiarevknar...vvglaravekdidaaa.ealk...paekkrihtfiatsdihleaklkktkdevlerivkavkyaknfvddvefsae...dagrteleflarvveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGiGeraGnaaleevvmalkvrkdflnvetgintkeiyrtsrlvskltgmlvqrnkaivGdnafahesGihqdGvlknketyeilspesiGlkkeklvlgkrsGraalkkrleelGfkl...deeeldklfekfkeladkkkev 367
                  v+i+dttlrdG q   +sl+v +k++iak l ++g+  ie G+p s + d e  ++   e+  +    vv++  +  k i     e l     a+ k + +    s  h+ + l+ + de l+++ + v++ k+   +v    e   d  +++    + v +aa++aGa ++ + dt G  +P e +e+ +++ ++  +  +a + vh+h+d  +avansl+a + Ga+ +++tinG+Ger+Gna l  ++  l+ +  + +v  +   +++   s +v +l +    +  + vG+ afah++G+h   + ++ ++y+ ++p  +G + +++v++   Gr  +  + ee+G+ +   +e +++    + +e   k  e+
  MMETSP1174-20130828|38568_1  80 VYIYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRARTELPPEAwekVVAFGSTRRKHITCDKdENLAkiiAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEFLKSQEREVMVDLEhfyDGFKSNKTVAMLVCQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKG--RALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGKTGVGGQ--LDQLTSLSLFVNELMNHQPVPCAPFVGSSAFAHKAGLHVSAISRHPSSYQHIDPAVVGNT-NRIVVSDLCGRSNILAKAEEFGLLEpmnQEGTMNTCLASREEWMSKSVEI 453
                  89**************************************************99999988876544559999888888776654134433437888888888889**************************99998888887775558999***999**************************************9976..99***************************************************999888877665..568999****************************************************65.789******************98542214555666555555555555555 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.6e-06
    TIGR00973 401 svptatvklkvkgee.keaaatGnGpvdavykaiekil......elevklleysitakge..gkdalgevkvvl 465
                    + at+kl+++ ++   ++a GnGpvda+  a++k+l        +v+l++y+++ +++  g+ a ++v ++ 
  MMETSP1174-20130828|38568_1 537 ATTRATIKLAMDKAHtLLEVAEGNGPVDALSVALSKALlpsfpiLSDVHLIDYKVRIVNSylGTAATTRVLITY 610
                  334589999999666589****************9986222222468999999998877622555555555544 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.0   9.8e-59   4.5e-56       1     330 [.      82     428 ..      82     437 .. 0.91

  Alignments for each domain:
  == domain 1    score: 188.4 bits;  conditional E-value: 9.8e-59
    TIGR02146   1 ilDstLreGeqtpgvvfstekrveiakaLddiGvdyievgsPavsedirkdikkiaklk..........lkakivthsravld.dievavelevdridvlfgvsklllkkkhrkdleeileeiaevieyvkskgvevrftae...DtsrsdledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvv.pgvdieihahnDlGlavanalaaiegGatvvdttvnGlGeraGivpLqvllaalyyhagvkv..ykLeklkeierlveeavgieippnypivGenafthkaGlhvkavlknPetyeilppevfGrkrklvidrltGkkaikarlekLglkl 330
                  i D+tLr+G q + +  s  ++++iak L ++G +yie g P   ++  +  ++  +            + +    h+ + +d ++  ++ ++ + + ++   s ++  +  r++l+e l  ++e +e+ ks+  ev    e   D+++s+    + v+++a +ag+d + + Dt G   P ++ e+ + ++     +  + +hahnD  +avan+l a  +Ga++++ t+nG+Ger+G  +L  ++  l+ ++g+     +L++l+ ++ +v+e+++ +  p  p vG  af+hkaGlhv+a+ + P+ y+ ++p v+G   ++v+  l G++ i a++e++gl  
  MMETSP1174-20130828|38568_1  82 IYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRARTELppeawekvvaFGSTRRKHITCDKDeNLAKIIAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEFLKSQEREVMVDLEhfyDGFKSNKTVAMLVCQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFkGRALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGKTGvgGQLDQLTSLSLFVNELMNHQPVPCAPFVGSSAFAHKAGLHVSAISRHPSSYQHIDPAVVGNTNRIVVSDLCGRSNILAKAEEFGLLE 428
                  679***************************************99876655554433222355555555555666679999886268999*******************************************99777776665569**********************************************9995567799*****************************************************9985679********************************************************************************99865 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.1   2.6e-55   1.2e-52       2     332 ..      80     427 ..      79     455 .. 0.87

  Alignments for each domain:
  == domain 1    score: 177.2 bits;  conditional E-value: 2.6e-55
    TIGR02660   2 vlinDttLRDGEqaagvaFsaeEKlaiAkaLdeaGvdelEvGipamgeeEraairaiaalglka...rllaW..cRl......raedieaaaevGvkavdlsvpvsdlqleaklkkdrawvleelkelvslakeeglkvsvgae...DasRadeeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraalele..lElHaHnDlGlAtAntlaavkaGassvsvtvlGlGERAGnAaleevalalkellg.ldtgidlselkelsqlvakasgraleaqkavvGesvFaHEsGiHvdgllkdeatYesldPeevGrerelviGKHsgraaviealkelgle 332
                  v+i DttLRDG q  ++  s  +K++iAk L+e G + +E G+p+   ++ +     +++ ++    +++a+  +R       ++e++++  ++ +kav +    s  ++++ l+ + +  l+ ++e v++ k++  +v v  e   D  ++++++ + + + a +aga+ l ++Dt g   P ++ e+ ++++++++    + +HaHnD  +A+An+l a+++Ga++++ t++G+GER GnA l +++ +l+  +g + +g +l++l++ls +v++  +++  +  + vG+s FaH +G+Hv+++ +++++Y+++dP+ vG ++++v+    gr+++ ++ +e+gl 
  MMETSP1174-20130828|38568_1  80 VYIYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRARTELPPEaweKVVAFgsTRRkhitcdKDENLAKIIAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEFLKSQEREVMVDLEhfyDGFKSNKTVAMLVCQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKGRalVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGkTGVGGQLDQLTSLSLFVNELMNHQPVPCAPFVGSSAFAHKAGLHVSAISRHPSSYQHIDPAVVGNTNRIVVSDLCGRSNILAKAEEFGLL 427
                  89*******************************************99888887766665554321224555521332111111345677788889999*******************************************9987779999999999999************************************97653389************************************************866541567889*************999999999*********************************************************99985 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00045       0.2       2      42 ..      79     119 ..      78     125 .. 0.94
   2 !   51.3   0.4   4.7e-17   2.1e-14     143     241 ..     236     332 ..     219     353 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00045
    TIGR03217   2 kltitdvtLrdGshavrhqftaeevraiaaaLdeagvdaie 42 
                  +++i d+tLrdG++  +  +++ +  +ia+ L e g ++ie
  MMETSP1174-20130828|38568_1  79 NVYIYDTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIE 119
                  689***********************************998 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 4.7e-17
    TIGR03217 143 eklaeqakllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahenlslavansivaveeGatridaslaglGagaGnaplevlvavld 241
                    l+ qa++  + Gadv+ + d+ G  +p ++++  + + +++k ++ vG+hah++ ++avans+ a + Ga++i ++++g+G   Gna+l  ++  l+
  MMETSP1174-20130828|38568_1 236 AMLVCQAAV--DAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKGRALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQ 332
                  556666664..79*****************************************************************************988887765 PP

>> TIGR00970  leuA_yeast: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.1e-16   1.4e-13      31     343 ..      84     387 ..      71     398 .. 0.79
   2 !    5.3   0.1    0.0028       1.3     461     558 ..     539     649 ..     519     653 .. 0.66

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 3.1e-16
    TIGR00970  31 svdlrdGnqalidpmsverkkryfkllvriGfkeievgfpsasqtdfdfvrei.ieqglipddv.tiqvltqsreeli....krtvealsGakkaivhlynatsdlfrevvfrasreevlalavegsklvrklvkdaaksketrwsfeyspesfsdtelefavevceavkeviepteerpiifnlpatvevatpnvyadsieylstniaerekvilslhphndrGtavaaaelGllaGadrieGclfGnGertGnvdlvt....lalnlytqGvspnldfsdldeilr.vvercnkipvherhpygGdlvvtafsGshqdaikk 343
                   + lrdG q     +sv +k r+ k+l ++G   ie g+p +   d +f  ++  e +  p+    + ++  +r + i    +  +  +  a    v +   +s ++   ++r s +e+la+  e+ ++   l    ++++e     e+  + f   ++  a+ vc+a  ++         ++ l  t   + p   ++   y+  ++  r   ++ +h+hnd+  ava +     +Ga  i+G + G GertGn +l++    l l +   Gv  +ld  +l+++   v e  n+ pv + +p+ G   ++  +G h  ai++
  MMETSP1174-20130828|38568_1  84 DTTLRDGTQGESISLSVLDKIRIAKRLHEFGAHYIEGGYPGSNPKDAEFFDRArTELP--PEAWeKVVAFGSTRRKHItcdkDENLAKIIAADTKAVCIVAKCSWFHISEILRVSLDESLAMVSESVEF---LK---SQEREVMVDLEHFYDGFKS-NKTVAMLVCQAAVDAG------ADVLVLCDTNGGSMPWEISEMTSYIVDHFKGRA--LVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISiipsLQLKMGKTGVGGQLD--QLTSLSLfVNELMNHQPV-PCAPFVGSSAFAHKAGLHVSAISR 387
                  589*******************************************998755504544..333212344455555555122223566677888889999999****99999*********999999333...32...3345666778888888975.5679*****9976543......3367799999*******************9885..6789*************9999***********************97222267899999******9..677776515566788777.789******************997 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0028
    TIGR00970 461 eskvitavvkikgekkdieGsGnGplsalvdaladllnv......dvavadysehalgsGddakaasyvelsvrrasdaeka.......tvw.GvGiaedvtsaslravlsa 558
                   + +i+  ++   +  ++   GnGp+ al  al++ l        dv + dy+   ++s  ++ a++ v ++++ + ++++          w  vG  +++ sasl a+l +
  MMETSP1174-20130828|38568_1 539 TRATIKLAMDKAHTLLEV-AEGNGPVDALSVALSKALLPsfpilsDVHLIDYKVRIVNSYLGTAATTRVLITYSYSESSRDVsfpsfkdRSWtTVGAGSNLVSASLGAMLDG 649
                  444444444444444444.57********99999876431111225677899999999999999998888877765544444567777766635899999999999998765 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.8e-07    0.0004     155     252 ..     240     339 ..     208     358 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.8e-07
    TIGR01108 155 akellelgvDsiaikDmaGlLtPkaayeLvsalkkeve..lpvelhshattglaelallkaieaGvdviDtaisslsagtshpatealvaalretgydtg 252
                   +  ++ g+D +++ D  G   P    e+ s + ++++    v +h+h   ++a +  l a+ +G+ +i  +i  +   t+++   +++  l+     tg
  MMETSP1174-20130828|38568_1 240 CQAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFKgrALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGKTG 339
                  5667999****************************99866789************************************999999988888876555554 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.24   1.1e+02     526     544 ..      75      93 ..      44     113 .. 0.81
   2 ?   10.0   0.4   4.9e-05     0.022     696     793 ..     241     340 ..     230     361 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.24
    TIGR01235 526 reqksvlltdttfrdahqs 544
                   +q++v + dtt+rd+ q 
  MMETSP1174-20130828|38568_1  75 IDQENVYIYDTTLRDGTQG 93 
                  4688999********9985 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 4.9e-05
    TIGR01235 696 eelekaGahilaikdmaGllkPaaaklliaalrekt..dlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGseldtgl 793
                  +  + aGa +l + d  G   P    ++ + + ++      + +h+h+   +ava  l+a+ +G+ ++  +++ +   t +  l +++ +l+ +  +tg+
  MMETSP1174-20130828|38568_1 241 QAAVDAGADVLVLCDTNGGSMPWEISEMTSYIVDHFkgRALVGVHAHNDQEMAVANSLSAARSGAHMIQGTINGVGERTGNANLISIIPSLQLKMGKTGV 340
                  55688999999999999999999999999988887765677999**********************************************9987777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 1593.47
//
Query:       MMETSP1174-20130828|38575_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|38574_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 830.75
//
Query:       MMETSP1174-20130828|38576_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1277.19
//
Query:       MMETSP1174-20130828|38573_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.9e-161  533.2   0.0   9.2e-161  533.0   0.0    1.0  1  TIGR01060 eno: phosphopyruvate hydratase
    8.3e-08   29.4   0.0    1.3e-07   28.8   0.0    1.2  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
     0.0027   14.6   0.3     0.0054   13.6   0.2    1.4  1  TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.0   0.0  6.7e-164  9.2e-161       1     420 [.      47     479 ..      47     484 .. 0.96

  Alignments for each domain:
  == domain 1    score: 533.0 bits;  conditional E-value: 6.7e-164
    TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek.........sltseelieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagkk 420
                  i++++are+ldsrGnPtvev+++++ g   ra vPsGastG  ea elrd+dk rylgkGvlka++ vn+ +++el Gld+ +q ++d+++ eldgt+nksklGanail+vs+a +kaaa a+++ply++ +g        +vlPvP  n++nGG+ha n+l +qe++i+Pvgaes++ea+r+g+e +h+lkk++k k    at +GdeGGfaP  + ++  +e+++eaie+agy       + +dvaasef  e+++ y l +            ++t++el +++++l++ +pi+ ied+++++dw ++a+lt  +G + q+vGddl vtn++++++ i+++ +na+l+k+nqiGt+te++ av+l ++ g+ ++ shrsGeted++iadlav+l +gqiktG+  rs+r akynqL+rieeelg++a yag++
  MMETSP1174-20130828|38573_1  47 IETLHAREILDSRGNPTVEVDMTTKGGVSVRASVPSGASTGIYEACELRDGDKGRYLGKGVLKACASVNKDLKEELRGLDVREQGALDAKMNELDGTPNKSKLGANAILGVSIAASKAAAVATGVPLYKHYAGLAglptdKMVLPVPAFNVVNGGSHAGNRLAFQEYFIIPVGAESFSEAVRIGCECYHTLKKIIKGKFggDATLIGDEGGFAPPCD-ARGGVELVMEAIETAGY--SGKCFIGMDVAASEFKVEGEDCYDLGKWYPeserndpalKMTASELGDFYAQLCADFPIITIEDPFDQDDWAAWANLTAAIGTETQVVGDDLTVTNVSRVQRAIDEKSCNALLLKVNQIGTITESIGAVNLCRTGGWGVMTSHRSGETEDNIIADLAVGLCTGQIKTGAPCRSDRNAKYNQLMRIEEELGNAAIYAGAS 479
                  7889*****************************************************************************************************************************9999887888899******************************************************995459**************9.8999*************..567899*********99999988765432234457899999***********************************************************************************************************************************************************976 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   9.8e-11   1.3e-07     197     279 ..     335     420 ..     325     425 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 9.8e-11
    TIGR01928 197 drydllyiEePfkadDlselkelkkellt..picl.DEsitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                  ++  +  iE+Pf+ dD     +l+  + t   +   D  +t++  ++++i+ ++++ + +K+  +G +te+  +++l++  g +v+
  MMETSP1174-20130828|38573_1 335 ADFPIITIEDPFDQDDWAAWANLTAAIGTetQVVGdDLTVTNVSRVQRAIDEKSCNALLLKVNQIGTITESIGAVNLCRTGGWGVM 420
                  6778999****************9987552155541669****************************************9888775 PP

>> TIGR01502  B_methylAsp_ase: methylaspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   3.9e-06    0.0054     266     374 ..     340     442 ..     319     449 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.9e-06
    TIGR01502 266 lriegPmdvgsrqaqieamaelraelddrGvaaeivadewcnt.vedvklfvdakaadlvqiktPdvGgvaesaravlyckandvgayvGGtcnetdlsaeasvhvalat 374
                  + ie P d ++      a a+l a     G+++++v d+   t v  v+  +d k+++ + +k   +G+++es  av +c++ + g        et+    a   v+l t
  MMETSP1174-20130828|38573_1 340 ITIEDPFDQDDW----AAWANLTA---AIGTETQVVGDDLTVTnVSRVQRAIDEKSCNALLLKVNQIGTITESIGAVNLCRTGGWGVMTSHRSGETEDNIIADLAVGLCT 442
                  467777775554....34555554...4699999**99976542789*************************************99999999999887777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1513.27
//
Query:       MMETSP1174-20130828|38578_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 570.53
//
Query:       MMETSP1174-20130828|38579_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    5.6  14.8        4.9    5.2   4.7    2.8  2  TIGR02184 Myco_arth_vir_N: Mycoplasma virulence family signal region


Domain annotation for each model (and alignments):
>> TIGR02184  Myco_arth_vir_N: Mycoplasma virulence family signal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.7    0.0012       4.9      11      28 ..      13      30 ..       1      33 [. 0.87
   2 ?    4.5   0.7     0.002       8.1      14      28 ..      37      51 ..      36      52 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0012
    TIGR02184 11 IatlaivtaLlvsqtiag 28
                 Ia+ +i++  ++s++ia+
  MMETSP1174-20130828|38579_1 13 IASHVIASHVIASHVIAS 30
                 889999999999999986 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.002
    TIGR02184 14 laivtaLlvsqtiag 28
                 +a+++  ++s++ia+
  MMETSP1174-20130828|38579_1 37 AAVASHVAASHVIAS 51
                 68999999****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1174-20130828|38580_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   32.5   0.0    8.7e-06   23.8   0.0    3.2  3  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.7e-08   31.2  10.6    3.3e-06   24.7   0.0    3.8  4  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00098   17.1   0.0        0.7    8.0   0.0    4.1  4  TIGR01068 thioredoxin: thioredoxin
      0.004   14.8   0.1      0.027   12.1   0.0    2.2  2  TIGR02187 GlrX_arch: glutaredoxin-like domain protein


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0072       7.4       6      59 ..      52     106 ..      48     122 .. 0.77
   2 !   23.8   0.0   8.5e-09   8.7e-06      33     103 ..     203     271 ..     200     273 .. 0.87
   3 ?   -2.4   0.0       1.2   1.3e+03       3      25 ..     306     328 ..     304     388 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0072
    TIGR01126   6 fdelvldenkdvlvefya..P.WCGhCkklaPeyeklakelkkeeekvkiakvdata 59 
                  ++  v+++++ +l+  ++  P  C  C  la e+ k+a++l      v+   vd+t 
  MMETSP1174-20130828|38580_1  52 VEAEVIKSSQLILLGIFSedPdECQGCDMLAKEFSKAAENLLGYG--VMTVAVDCTG 106
                  55666667777777766533335999***************9864..8888899986 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 8.5e-09
    TIGR01126  33 aPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGe.Reaeelvefvee 103
                  +P y+ la +++++   ++ a+v +++e+   ++f++++fPtl+++++g +++v ++G+  + +e++ f+ee
  MMETSP1174-20130828|38580_1 203 SPLYKALAYHFQRRG--LQFAEVHSEEEDI-VNEFGIDSFPTLTVVPEGVDSAVIFDGSiASWDEIATFIEE 271
                  699********9865..9*****9987765.58*************************72567899999987 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.2
    TIGR01126   3 aenfdelvldenkdvlvefyaPW 25 
                  +e+f+e +l+++ +++v +    
  MMETSP1174-20130828|38580_1 306 EESFEESILKSDTAWMVLYRDGL 328
                  56778888877777777665444 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00014      0.14       7      66 ..      49     109 ..      42     113 .. 0.81
   2 !   24.7   0.0   3.2e-09   3.3e-06     382     469 ..     203     292 ..     201     301 .. 0.78
   3 ?   -0.6   0.0      0.16   1.6e+02     263     349 ..     613     700 ..     594     716 .. 0.74
   4 ?   -5.8   5.6         4   4.1e+03     153     197 ..     727     771 ..     687     779 .] 0.36

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00014
    TIGR01130   7 tkenfddlikenelvLveFYA..P.WCGHCksLaPeYekAAeelkkkspkvklakvDateeke 66 
                  +k+  +++ik+++l+L   +   P  C  C  La e++kAAe+l   +  v  + vD+t  + 
  MMETSP1174-20130828|38580_1  49 KKDVEAEVIKSSQLILLGIFSedPdECQGCDMLAKEFSKAAENLLGYG--VMTVAVDCTGAMP 109
                  55556788899999988888744435999*****************99..*********8765 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3.2e-09
    TIGR01130 382 apiYeelaekykkeedvviakldataNdvpe.fevegFPTilfvpagkksepvkyegdRtledlvkFikknatielegkk....eeeeekdee 469
                   p Y+ la +++    +  a++ + + d+ + f + +FPT+  vp+g +s ++   +  + +++  Fi++ a + + +++    +  e+ +++
  MMETSP1174-20130828|38580_1 203 SPLYKALAYHFQRR-GLQFAEVHSEEEDIVNeFGIDSFPTLTVVPEGVDSAVIFDGSIASWDEIATFIEEYAGELIVNEEdppsK--EDDSSN 292
                  599**********9.9************9888*****************766666667899*********998765544434321..222222 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.16
    TIGR01130 263 fkgkkvkfavadeeefgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgkl..kpvlkSepipeddeepVkv 349
                  ++   + f  a+     +++e ++++  + p++v +s ++ +++a     + +ea+k++++ +l+g++  +p+++S ++ + d   V v
  MMETSP1174-20130828|38580_1 613 QSSSPYVFSWANGACQLSMAEAFDVHPTQLPTLVAYSPKK-QRFAGFIGVYGAEAVKDLLSGVLSGRVrtTPMYQSPEVSDLDCTGVEV 700
                  3333566777777777889999****9*********9998.999987668889999999999999976226888888887766666665 PP

  == domain 4    score: -5.8 bits;  conditional E-value: 4
    TIGR01130 153 klrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekvee 197
                  ++r k + + + ++eaa +k++a++++ ++  ++++ +k++k ++
  MMETSP1174-20130828|38580_1 727 EQRAKQELADEIAREAAEAKQKAQEEAEAAAAEEAKATKKKKKKK 771
                  222222222222222222222222222111111111111111111 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.039        40       4      45 ..      50      94 ..      47     116 .. 0.72
   2 !    8.0   0.0   0.00068       0.7      47      81 ..     218     251 ..     201     271 .. 0.78
   3 ?   -2.6   0.0       1.3   1.3e+03      67      94 ..     411     439 ..     401     445 .. 0.71
   4 ?    0.8   0.0      0.12   1.2e+02      60      98 ..     631     672 ..     619     675 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.039
    TIGR01068  4 enfeetvassdklvlvDfwAe...WCgpCkmlaPvleelakelee 45
                 +++e +v +s++l+l+  + e    C  C mla  + ++a++l +
  MMETSP1174-20130828|38580_1 50 KDVEAEVIKSSQLILLGIFSEdpdECQGCDMLAKEFSKAAENLLG 94
                 5667777777789999999863336*************9987654 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00068
    TIGR01068  47 vkvvKlnvdeeqeiaakygirsiPtlllfkngkev 81 
                  ++++ +   ee++i +++gi s Ptl ++ +g   
  MMETSP1174-20130828|38580_1 218 LQFAEVHS-EEEDIVNEFGIDSFPTLTVVPEGVDS 251
                  66666665.567999*************9999765 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.3
    TIGR01068  67 rsiPtlllfkngkevkr.vvGakpkaalk 94 
                  +siP l l  n+ + ++ ++Ga +++++ 
  MMETSP1174-20130828|38580_1 411 ESIPDLTLKINDMSLDNaIIGASQDSKIL 439
                  79999988777777655167999988876 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.12
    TIGR01068  60 iaakygi..rsiPtlllfk.ngkevkrvvGakpkaalkelie 98 
                  +a+++++  + +Ptl+ +  + ++ +  +G+   +a+k+l++
  MMETSP1174-20130828|38580_1 631 MAEAFDVhpTQLPTLVAYSpKKQRFAGFIGVYGAEAVKDLLS 672
                  566666622579****99725566788999999999998876 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.24   2.4e+02      23      50 ..      65      88 ..      44     103 .. 0.60
   2 !   12.1   0.0   2.6e-05     0.027      61     110 ..     223     271 ..     204     293 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.24
    TIGR02187 23 lvvFtdeskekCeyCeetkqlleelsev 50
                 l +F+++  ++C+ C+ +    +e+s++
  MMETSP1174-20130828|38580_1 65 LGIFSED-PDECQGCDMLA---KEFSKA 88
                 4456664.44699998754...444443 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.6e-05
    TIGR02187  61 ldteedkekvekykvervPtvileeegskdieirytG.iPaGeEfaalied 110
                  ++  e+ ++v++++++  Pt+++  eg  d  + + G i +  E+a++ie+
  MMETSP1174-20130828|38580_1 223 VH-SEEEDIVNEFGIDSFPTLTVVPEG-VDSAVIFDGsIASWDEIATFIEE 271
                  44.467789****************99.788888888578889******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.70
# Mc/sec: 1468.85
//
Query:       MMETSP1174-20130828|38581_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1206.76
//
Query:       MMETSP1174-20130828|38582_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-60  202.2   0.0    1.3e-60  201.8   0.0    1.2  1  TIGR03953 rplD_bact: 50S ribosomal protein L4
    3.4e-06   24.5   0.1    6.4e-06   23.6   0.0    1.4  1  TIGR03672 rpl4p_arch: 50S ribosomal protein L4P


Domain annotation for each model (and alignments):
>> TIGR03953  rplD_bact: 50S ribosomal protein L4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   6.5e-64   1.3e-60       2     188 .]     137     326 ..     136     326 .. 0.98

  Alignments for each domain:
  == domain 1    score: 201.8 bits;  conditional E-value: 6.5e-64
    TIGR03953   2 elsdevfgvevneqllhevvkaqlanrrqgtaktktrseVsgggkKpyrQKgtGrARqGsirsplfrgGGvvfGpkpr.dysqklnkKvrrlAlrsaLseklkegklvvvddlkleepkTkellkilkklglekkvLivvd..ekdenlelsarNlpkvkvleveglnvydllkadkvvlteeavkklee 188
                  +l+++vfg  ++ ++lh+vv++qla+rr+gta+tk+ seVsg+gkK+  QKgtG+AR+G  r p++r+G+v++Gp+ +  +++klnkKvrrl+l +aLs+kl+eg+l+vvd+l++e+ kT++l + l + g+++k+L+v+d  + d+ +++++ Nlp v++l+  glnvyd+lka+ vvlt +av++lee
  MMETSP1174-20130828|38582_1 137 SLDSRVFGRPLRIDILHQVVRWQLAKRRRGTAHTKNISEVSGSGKKMRPQKGTGQARAGHSRPPHWRHGAVAHGPRGEtIWTFKLNKKVRRLGLLTALSQKLSEGRLHVVDSLATESLKTRALEQRLVHQGWTDKILFVDDllTGDSFFRKASSNLPYVHTLPSIGLNVYDILKATDVVLTVDAVAALEE 326
                  6899**************************************************************************66*************************************************************999******************************************9986 PP

>> TIGR03672  rpl4p_arch: 50S ribosomal protein L4P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.1e-09   6.4e-06      20     120 ..     141     237 ..     130     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.1e-09
    TIGR03672  20 evFeeevRkDlikravlaaqtarlqpkG.adplaGkrtsaeslgsgrGvarvprlkessraarvpqavgGrkahpPkvekklvekiNkkEkklairsAiaat 120
                  +vF  ++R D+++++v+ + ++r+  +  +++++ +  s + ++ ++G+ + +   ++    r p+ + G  ah P+ e++++ k+Nkk ++l + +A++  
  MMETSP1174-20130828|38582_1 141 RVFGRPLRIDILHQVVRWQLAKRRRGTAhTKNISEVSGSGKKMRPQKGTGQARA--GH---SRPPHWRHGAVAHGPRGETIWTFKLNKKVRRLGLLTALSQK 237
                  69***************9999988765416778888999999999888887544..33...45799********************************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 1501.94
//
Query:       MMETSP1174-20130828|38583_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1515.60
//
Query:       MMETSP1174-20130828|38585_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  101.4  16.8    1.4e-17   61.4   2.0    4.0  4  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.3e-23   81.0   0.1    3.7e-23   80.3   0.1    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.4e-15   53.8   4.0    2.4e-15   53.8   2.8    1.9  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    2.3e-13   47.9   6.0    2.8e-06   24.9   0.1    3.9  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.6e-12   42.2   1.9    0.00033   16.5   0.0    3.5  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.2e-09   35.1  16.6    0.00027   18.4   0.3    5.3  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    6.7e-07   27.4   3.4    6.2e-06   24.2   0.0    3.0  3  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
     0.0014   17.1   5.2        3.9    5.9   0.0    4.8  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.015   13.4   0.0      0.041   12.1   0.0    1.7  1  TIGR02508 type_III_yscG: type III secretion protein, YscG family


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   2.0     3e-20   1.4e-17     102     228 ..      38     164 ..      12     203 .. 0.85
   2 ?    2.9   0.0     0.015       6.9     378     432 ..     224     278 ..     198     287 .. 0.81
   3 !   38.4   0.1   2.8e-13   1.3e-10     130     203 ..     294     372 ..     283     379 .. 0.86
   4 !    6.2   0.8    0.0016      0.73     381     431 ..     382     432 ..     374     450 .. 0.84

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 3e-20
    TIGR00990 102 esadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrd 228
                  e  de  e de++  +   e++   a k+k++Gn  y+ kd+  ai  ys a+ l ++   yy+nra+    + +++kv+ d   a+ ldpd +ka +r+ +ay  +g+  da    t+  + d  ++
  MMETSP1174-20130828|38585_1  38 EESDESEEEDEDDDEEEEPEDKAVTAEKMKDLGNIRYKGKDYRGAISAYSEAIALNPEvATYYTNRASARLMILEYQKVISDCDLAIGLDPDLSKAYLRKGKAYMAIGRAVDAQSTYTTALIRDP-NN 164
                  567889999999999999999999*******************************998458****************************************************988887666554.33 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.015
    TIGR00990 378 lgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdf 432
                   g  ++a+      ++ +s  + + + ra+  +  ++ + a k  + ++ +dpd+
  MMETSP1174-20130828|38585_1 224 IGRYQEAYTVSTSLMRVNSRVPGLIFWRAKCLYYMDQMDSAIKHMQEAMRMDPDN 278
                  555667777777788999999********************************98 PP

  == domain 3    score: 38.4 bits;  conditional E-value: 2.8e-13
    TIGR00990 130 lkekGnkayrnkdfdkaielyskalllkedPvyys.....nraacynaladlekvvedttaaleldpdyvkalnrrana 203
                   k+ Gn  ++n df kaie +sk l++ +    +      nra+ y  l   e+ v+d t+aleld++y+ka  rra++
  MMETSP1174-20130828|38585_1 294 QKQIGNTKFKNGDFLKAIECWSKCLEVDPTHRSFNaklllNRATAYSKLRRHEETVADCTRALELDDKYIKAYSRRAES 372
                  5899*********************9977543221244449***********************************986 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.0016
    TIGR00990 381 sdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaa.kdydksidldpd 431
                   ++a +d++ka+++d eds+  y   +l+ ++ e + a+ kd+ k + l  d
  MMETSP1174-20130828|38585_1 382 LQRAFNDYEKAMELDNEDSQGSYK-QKLRAVQAEIKRAGrKDFYKIMGLQKD 432
                  568899*************99986.589999999999965899999988877 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   8.2e-26   3.7e-23       1     109 [.     422     534 ..     422     543 .. 0.75

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 8.2e-26
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.....ekeaeekfkeineAyevLsdeekraqYDqfgh.agleggaggggagfegfeasefgdigdifeeffgggggsgrr 109
                  d+Y+i+g++kdA+eeei+k Y+kla +yHPDr++      +k ae+ fk ineAye L d+ekra+YD     ++l++    g++g +g  + +  + +d++++f+++++g g r
  MMETSP1174-20130828|38585_1 422 DFYKIMGLQKDATEEEIRKKYKKLALRYHPDRQSSkgdeeRKSAETLFKGINEAYECLLDKEKRAKYDAGVDpEDLDN-PHAGAGGCRGGGM-DGINQEDLLRMFMSQQRGGGGR 534
                  9*******************************876556667889999*********************9433133343.3334444554443.2333678888888877765544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   2.2       1.1   5.1e+02     327     365 ..      27      64 ..      12      93 .. 0.52
   2 !   53.8   2.8   5.2e-18   2.4e-15       2      73 ..     421     494 ..     420     501 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.1
    TIGR03835 327 eptsevistvsveatdqlkpkevdqiqeelkktkeieve 365
                  + + e++s   +e +d+ + ++ d  +ee+ + k++  e
  MMETSP1174-20130828|38585_1  27 DSDDEMQSVN-DEESDESEEEDEDDDEEEEPEDKAVTAE 64 
                  2222322222.2222222222222223333333333333 PP

  == domain 2    score: 53.8 bits;  conditional E-value: 5.2e-18
    TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnka......adaakifaeineandvLsnPkkraryDkyGhDGvDr 73 
                  +D+y ++g+++Da e+ei+k ++kLa +yhPDr           a+ +f+ inea++ L + +kra+yD     GvD 
  MMETSP1174-20130828|38585_1 421 KDFYKIMGLQKDATEEEIRKKYKKLALRYHPDRQSSkgdeerKSAETLFKGINEAYECLLDKEKRAKYDA----GVDP 494
                  8*******************************97543111235699***********************5....4444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   6.2e-09   2.8e-06      28     127 ..      73     172 ..      59     181 .. 0.91
   2 !   17.4   0.0   1.3e-06    0.0006      66     123 ..     225     282 ..     219     291 .. 0.85
   3 !    5.8   0.2    0.0052       2.3      24     129 ..     297     408 ..     286     415 .. 0.73
   4 ?    3.5   0.0     0.025        11      65     130 ..     379     443 ..     374     447 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.2e-09
    TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselke 127
                   y+ ++y+ A  +++  +al+p  a y    a+++ +  ey++ i   +la  ld+d  +++++ ++ ++a+g+  +A+++  +a+ ++ ++ e ++ ++
  MMETSP1174-20130828|38585_1  73 RYKGKDYRGAISAYSEAIALNPEVATYYTNRASARLMILEYQKVISDCDLAIGLDPDLSKAYLRKGKAYMAIGRAVDAQSTYTTALIRDPNNVELKKERQ 172
                  68999********************************************************************************999999887666555 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.3e-06
    TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                  ++y+eA    +  + ++   p  ++ +a+cl+ +++  +A k ++ a++++ +++ey 
  MMETSP1174-20130828|38585_1 225 GRYQEAYTVSTSLMRVNSRVPGLIFWRAKCLYYMDQMDSAIKHMQEAMRMDPDNSEYR 282
                  567777776666777777888899*******************************985 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0052
    TIGR02552  24 lAYnlyqqgkyeeAeklFqlLaaldpteakywlgL....aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaL...klaieiaeekeeyselkera 129
                  ++ + +++g++ +A +  +    +dpt   + + L    a ++ +l ++ee +a  ++a+ ld +  +++ ++ae+l  l+ ke+ ++a+   + a+e+++e++    +k++ 
  MMETSP1174-20130828|38585_1 297 IGNTKFKNGDFLKAIECWSKCLEVDPTHRSFNAKLllnrATAYSKLRRHEETVADCTRALELDDKYIKAYSRRAESLRVLDGKENLQRAFndyEKAMELDNEDS-QGSYKQKL 408
                  55667777888888888877777887766665555444499999999999999999999999999999999999999998877765555511157777777776.45566655 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.025
    TIGR02552  65 lkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkerae 130
                  +++ ++A + Y+ a+ ld +d +  y+     ++ + k+  +k++   + ++++ +  +e++++ +
  MMETSP1174-20130828|38585_1 379 KENLQRAFNDYEKAMELDNEDSQGSYKQKLRAVQAEIKRAGRKDFYKIMGLQKDAT-EEEIRKKYK 443
                  67899*********************999999999999999999999888888777.566666655 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.2e-07   0.00033     605     693 ..      67     155 ..      57     168 .. 0.84
   2 !    8.7   0.0   0.00016     0.071     566     671 ..     176     281 ..     167     296 .. 0.87
   3 !   14.2   0.1   3.5e-06    0.0016     132     234 ..     298     407 ..     291     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.2e-07
    TIGR02917 605 ellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllk 693
                  + lg++  + kd + a++++ ++++l+p+ a+ +   a +  +  +++k +     a+ l+pd+ +a l++ + +++ +r  +A +++ 
  MMETSP1174-20130828|38585_1  67 KDLGNIRYKGKDYRGAISAYSEAIALNPEVATYYTNRASARLMILEYQKVISDCDLAIGLDPDLSKAYLRKGKAYMAIGRAVDAQSTYT 155
                  55788888889999999999999999999999999999999999999999999999999999999999999999999999999988775 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00016
    TIGR02917 566 elepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdntea 671
                  e+ ++l+La++ l+k++ ++     e + +   +s+ +  ++ +a+   +  ++a  + ++l+ +++  +      a+    + + + A++ +++a+ ++pdn e 
  MMETSP1174-20130828|38585_1 176 EVGQRLKLARQCLEKKQYMQTWRQVELVEKSITHSADVSMIKIQALCGIGRYQEAYTVSTSLMRVNSRVPGLIFWRAKCLYYMDQMDSAIKHMQEAMRMDPDNSEY 281
                  5667899999999999999999999999999999999999999999999999999999999999999998888888888889999999999999999999999875 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 3.5e-06
    TIGR02917 132 glAaLglgeleeAqksleqAlaiapk..sleaklglAqlalaen..kldearalvdevLtadpknvdAllLkgdllls...sgnieeAlaayrkaielkpnaiaallala 234
                  g++++++g++ +A +  ++ l+ +p+  s +akl l +  +  +  + +e+ a   ++L+ d k ++A++ +++ l++   ++n + A ++y+ka+el+ ++++  + + 
  MMETSP1174-20130828|38585_1 298 GNTKFKNGDFLKAIECWSKCLEVDPThrSFNAKLLLNRATAYSKlrRHEETVADCTRALELDDKYIKAYSRRAESLRVldgKENLQRAFNDYEKAMELDNEDSQGSYKQK 407
                  788888999999999999999998852266788877766666655599999999999*************9999887733357888999********9999999887765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.056        25      19      72 ..      51     104 ..      43     107 .. 0.81
   2 !   17.0   0.0   1.6e-06   0.00074      35     100 ..     101     166 ..      95     170 .. 0.85
   3 ?    0.7   0.1      0.16        71     172     227 ..     180     235 ..     168     241 .. 0.79
   4 !    5.0   0.0    0.0072       3.3     144     177 ..     254     287 ..     251     297 .. 0.77
   5 !   18.4   0.3   5.9e-07   0.00027      24      99 ..     322     400 ..     312     403 .. 0.88
   6 ?   -3.8   0.1       3.6   1.7e+03      25      48 ..     433     456 ..     428     465 .. 0.61

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.056
    TIGR02521  19 kesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalA 72 
                   e+++ +d++ +a+   +L+   ++ +d++ A  +  +A++l+p+ a  +  +A
  MMETSP1174-20130828|38585_1  51 DEEEEPEDKAVTAEKMKDLGNIRYKGKDYRGAISAYSEAIALNPEVATYYTNRA 104
                  566777888888888889999999999999999999999999999998887776 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.6e-06
    TIGR02521  35 vqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  ++ a + l   +++k   + + A+ ldp+ ++a+l  + +y+ +g+   A+  + +Al  +pnn +
  MMETSP1174-20130828|38585_1 101 TNRASARLMILEYQKVISDCDLAIGLDPDLSKAYLRKGKAYMAIGRAVDAQSTYTTALIRDPNNVE 166
                  5555555556677888889999*****************************************976 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.16
    TIGR02521 172 llelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeyea 227
                   l+la+  l+k+qy++++ ++e +++++ ++a+  ++ i+     g++++a+  + 
  MMETSP1174-20130828|38585_1 180 RLKLARQCLEKKQYMQTWRQVELVEKSITHSADVSMIKIQALCGIGRYQEAYTVST 235
                  57899999999999999999999999998888887777777766777766666555 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.0072
    TIGR02521 144 calkagdtekaekyltralkidpkrpesllelae 177
                  c++   +++ a k +++a+++dp+++e   e+ +
  MMETSP1174-20130828|38585_1 254 CLYYMDQMDSAIKHMQEAMRMDPDNSEYRVEIQK 287
                  7778888888889999999999988887777665 PP

  == domain 5    score: 18.4 bits;  conditional E-value: 5.9e-07
    TIGR02521  24 kkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg...elekAeesfrkAltlkpnng 99 
                   + r+  ak  ++ a++Y +    e+  ++   Aleld k+ +a++ +A  +  l    +l++A + ++kA++l++++ 
  MMETSP1174-20130828|38585_1 322 PTHRSFNAKLLLNRATAYSKLRRHEETVADCTRALELDDKYIKAYSRRAESLRVLDgkeNLQRAFNDYEKAMELDNEDS 400
                  56667778999999***********************************988877666699**************9986 PP

  == domain 6    score: -3.8 bits;  conditional E-value: 3.6
    TIGR02521  25 kdrekaakirvqLaleYleqgdle 48 
                    +e+++k + +Lal+Y    +  
  MMETSP1174-20130828|38585_1 433 ATEEEIRKKYKKLALRYHPDRQSS 456
                  455666677777777776655555 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.065        30      20      95 ..     127     206 ..     117     222 .. 0.66
   2 ?   -2.3   0.1         2     9e+02      73      95 ..     363     385 ..     333     412 .. 0.56
   3 !   24.2   0.0   1.4e-08   6.2e-06       5      56 ..     435     488 ..     432     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.065
    TIGR00714  20 HPDvsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLqrnidLasE..qks..vrdvafllellklrdeleeieqa 95 
                   PD sk  + + +a        +A +T   +l R    ++L+++ +L +E  q+    r+ ++  + ++ + ++e +e+ 
  MMETSP1174-20130828|38585_1 127 DPDLSKAYLRKGKAYMAIGRAVDAQSTYTTALIRDPNNVELKKERQLCEEvgQRLklARQCLEKKQYMQTWRQVELVEKS 206
                  67777777777777777777778888888888888888888877777777332212355555566666666666666654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2
    TIGR00714  73 vrdvafllellklrdeleeieqa 95 
                  ++  +   e l+++d  e++++a
  MMETSP1174-20130828|38585_1 363 IKAYSRRAESLRVLDGKENLQRA 385
                  44444444445555544444443 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 1.4e-08
    TIGR00714   5 ekaLrkryrklQkqyHPD..vsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                  e+ +rk+y+kl  +yHPD   sk   e++ a      +N+Ay+ L d  kRa+y
  MMETSP1174-20130828|38585_1 435 EEEIRKKYKKLALRYHPDrqSSKGDEERKSAETLFKGINEAYECLLDKEKRAKY 488
                  56799*************9666667777777777889***************99 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.067        30      45      71 ..      69      95 ..      62     109 .. 0.83
   2 ?    4.3   0.0     0.028        13      42      72 ..     248     278 ..     223     282 .. 0.87
   3 !    5.9   0.0    0.0087       3.9      45      95 ..     297     348 ..     294     371 .. 0.87
   4 ?   -2.6   0.1       3.9   1.8e+03      86     111 ..     429     455 ..     393     463 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.067
    TIGR02795 45 lGealyakkkykdAakaflevvkkypk 71
                 lG+  y+ k+y+ A+ a++e+++ +p+
  MMETSP1174-20130828|38585_1 69 LGNIRYKGKDYRGAISAYSEAIALNPE 95
                 688889999999999999888876665 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.028
    TIGR02795  42 qYwlGealyakkkykdAakaflevvkkypks 72 
                   +w+++ ly   ++++A+k+ +e+++ +p++
  MMETSP1174-20130828|38585_1 248 IFWRAKCLYYMDQMDSAIKHMQEAMRMDPDN 278
                  59*********************99998876 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0087
    TIGR02795  45 lGealyakkkykdAakaflevvkkypkse.kapdallklgeslqelgqkekA 95 
                  +G++ ++++++ +A++ +++ ++ +p++    ++ ll+ ++++++l+++e+ 
  MMETSP1174-20130828|38585_1 297 IGNTKFKNGDFLKAIECWSKCLEVDPTHRsFNAKLLLNRATAYSKLRRHEET 348
                  699***********************986257888999******99998875 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 3.9
    TIGR02795  86 lqelgqkekAkktlqevikrY.Pkssa 111
                  lq+   +e+ +k +++++ rY P+ ++
  MMETSP1174-20130828|38585_1 429 LQKDATEEEIRKKYKKLALRYhPDRQS 455
                  455566677777888887777344444 PP

>> TIGR02508  type_III_yscG: type III secretion protein, YscG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.9e-05     0.041      40      93 ..     211     269 ..     199     294 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.9e-05
    TIGR02508  40 eavvlirlssLmnrGdYeealqlgeelc.....yPdlepwlaLcearlGlasaleerll 93 
                    v++i++ +L   G Y+ea+ +   l       P l+ w a c + + ++++  + ++
  MMETSP1174-20130828|38585_1 211 ADVSMIKIQALCGIGRYQEAYTVSTSLMrvnsrVPGLIFWRAKCLYYMDQMDSAIKHMQ 269
                  4599*****************9988876666779***********99998875544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.21s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 1601.47
//
Query:       MMETSP1174-20130828|38589_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|38587_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1911.96
//
Query:       MMETSP1174-20130828|38586_1  [L=981]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-104  347.6   0.0    5.5e-66  220.9   0.0    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
      4e-39  132.1   0.3    1.3e-25   87.5   0.2    3.3  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.3e-38  130.4   0.0    7.1e-13   45.4   0.0    3.1  3  TIGR00484 EF-G: translation elongation factor G
    4.9e-21   72.5   0.1    1.1e-19   68.0   0.0    2.4  3  TIGR01393 lepA: GTP-binding protein LepA
    2.4e-12   43.9   0.0    4.5e-12   43.0   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    1.9e-11   41.2   0.1    3.4e-09   33.7   0.0    2.2  2  TIGR00485 EF-Tu: translation elongation factor Tu
    2.7e-11   40.7   0.1    7.5e-11   39.3   0.0    1.6  2  TIGR00487 IF-2: translation initiation factor IF-2
    3.3e-11   40.4   0.6    5.5e-11   39.7   0.0    1.5  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.7e-10   38.8   0.0    3.3e-10   37.8   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-07   28.2   0.1    2.8e-07   27.2   0.0    1.5  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.1e-07   28.2   0.1    1.7e-06   25.2   0.0    2.0  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    8.9e-06   22.2   0.1    2.1e-05   21.0   0.0    1.6  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.3e-05   21.1   0.1    5.9e-05   20.3   0.1    1.3  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    8.9e-05   19.5   0.1    0.00018   18.5   0.1    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.049   11.2   0.0       0.16    9.5   0.1    1.7  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.055   11.2   0.2       0.11   10.3   0.2    1.5  1  TIGR04057 SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.0     3e-39   7.7e-37       9     216 ..     126     334 ..     118     343 .. 0.94
   2 !  220.9   0.0   2.2e-68   5.5e-66     247     702 ..     440     918 ..     436     929 .. 0.86

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 3e-39
    TIGR00490   9 ikelmekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvhe.yegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerlikiiaevnklikkmapeefkdkwkvrvedgsvafgsayynwaisvpimkk 216
                  ++ lm  p  irn+ +v    hgkt + d l+  +     +   e ++ d   +eq+r ++i+++ vs+v    + +  l n+id pgh+ f  + +  mra dg+++vv+avegvm  te +++ al e++  vl inkvdrl+ elk+ a++   +l++ ++evnkl+ +       +  ++  e g v f sa + w  s+ +  k
  MMETSP1174-20130828|38586_1 126 MQSLMRTPSLIRNVAMVGQFHHGKTLFMDILVQQSQEKDFDPEKEIRYTDCRMDEQQRELSIKSTPVSLVLAnSNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRLLLELKMPAHDAYFKLLHTLEEVNKLVAQCWTGVTGSPPRLSPERGNVCFASAKHGWCFSLFSFAK 334
                  6789*****************************9999999999999***********************97516789999*************************************************************************************************************************99876665 PP

  == domain 2    score: 220.9 bits;  conditional E-value: 2.2e-68
    TIGR00490 247 ldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagev.avgrlysgaikkgsevylv......dskakariqqv...gvymgpervevdeipagnivavvglkeava.geti.cstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek.agvevetsepivvyretvtgtspv.vegkspnkhnrlyivvepleesvlqafkegkikdvkvkkkeiakeli.eagldkeeakrveev....yegnllinvtr....giqyldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemk.qeg.dmvtikakvpvaemfgfagairgategralwstefagfekvpre 702
                  +dm+ kh+psp+++   ++  ++ g   s +   m  cdp+  l + + k+   ++     + gr++sg+++ g+ev ++      d+++   + +v   ++  g  r++v+e+ agn + + g+   +    ti  st++ ++ f  +   +  v+ +a+e  n+ +lpk++e lr+++k  p    ++ ee+geh+i g gel l+ i++  r    ++ev++++p+  + etv  ts+    + +pnk n+l ++ eplee + + +++g++  ++ ++k++   ++ +   d   a+ ++ +       n+l++ t       + l +v+  +++gf+   r+gp+  e+    k k++da +  + +hrg  q+ip++r   ++a+l a p l+ep+  + i+ p d++ ++   +  rrg +++   + g  +  +ka +p  + fgf  ++r+ t+g+a+  + f  +  vp +
  MMETSP1174-20130828|38586_1 440 VDMIEKHVPSPVDSAVSKVEQMYTGSGASSVYPGMTTCDPKADLMINVIKLYSSPDGSTFhSLGRVFSGTVRVGQEVKVLgeafslDDEEDMAVCEVtglSIGEGRYRLDVQEVGAGNWIMLQGVDAPINkTATItTSTVNDVEIFRPLAFNTSAVMKLAVEPLNPAELPKMVEGLRRISKSYPLSGTKV-EESGEHVILGTGELSLDCIMHDLRSMySDIEVKVADPVTAFCETVVETSALkCFAETPNKRNKLTMICEPLEEGLAEDIEKGEV-SIEWERKQLGDFFQsKYDWDLLTARSIWAFgpdlDGPNILVDDTLpsevDKKLLAQVRGSVVQGFQWGCREGPLCDEPLRNTKFKILDATIAPEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVFEMQIQAPADVVSSIFPVLARRRGHVVQDSpKPGaPFYSVKAYIPAIDSFGFETDLRAFTQGQAMCYMVFDHWSIVPGD 918
                  79************************************************9999987765389************99765211111444444444332115556678999**************986543133441578999******************************************877665.899****************9999988579*****************9998626799**************************65.6899999998888734567888999999652221567****98852211346799*************************************************************************************************9765134416889**************************99999999888876 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.2   5.2e-28   1.3e-25       1     149 [.     136     290 ..     136     298 .. 0.91
   2 !   17.1   0.0     1e-06   0.00027     218     287 ..     501     577 ..     474     672 .. 0.70
   3 !   23.6   0.0   1.1e-08   2.8e-06     391     474 ..     834     918 ..     807     925 .. 0.91

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 5.2e-28
    TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd.....tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpee.vvdevfdLfvelga 149
                  irn+a++    hGkt ++D l++qs+  +   e e r  D    e+ r + i +  +++   +        ni+D PGh  f  e    +   dgv+l+vDa+eG++  t  +++ al  +l  ++vink+Dr   + +   +d+ f L+  l+ 
  MMETSP1174-20130828|38586_1 136 IRNVAMVGQFHHGKTLFMDILVQQSQEKDFDPEKEIRYTDCRMDEQQRELSIKSTPVSLVLANsncksLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRLLLELKMpAHDAYFKLLHTLEE 290
                  8*************************9998999999999*9999********9999998766655555889**************************************************************9988765378899999988875 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1e-06
    TIGR01394 218 aigrverGkvkkgqqvallkkd......gkiekariskllafeglerveideaeaGdivavaGled.ieigetiada 287
                   +grv +G+v+ gq+v++l +       + ++   ++ l   eg  r +++e++aG+ +++ G+++ i+ + ti++ 
  MMETSP1174-20130828|38586_1 501 SLGRVFSGTVRVGQEVKVLGEAfslddeEDMAVCEVTGLSIGEGRYRLDVQEVGAGNWIMLQGVDApINKTATITTS 577
                  589**************9876544433367788889999999*********************97523444444433 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.1e-08
    TIGR01394 391 kklePieeltidvpeefvgavieklgkrkgelkdmeskgs.GrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkge 474
                  + +eP+ e++i+ p + v+++   l++r+g++++ ++k       ++  iP+   +Gf+t++ + t+G+++   vfd+++ + g+
  MMETSP1174-20130828|38586_1 834 RLMEPVFEMQIQAPADVVSSIFPVLARRRGHVVQDSPKPGaPFYSVKAYIPAIDSFGFETDLRAFTQGQAMCYMVFDHWSIVPGD 918
                  579*****************************9999886636788999******************************9887765 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.5e-14   3.8e-12      10     140 ..     136     269 ..     130     284 .. 0.76
   2 !   38.2   0.0   4.1e-13     1e-10     328     490 ..     504     679 ..     437     692 .. 0.70
   3 !   45.4   0.0   2.8e-15   7.1e-13     590     679 ..     826     917 ..     772     926 .. 0.82

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.5e-14
    TIGR00484  10 lrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkd.....frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdki 140
                  +rn+ ++     Gkt   + il   ++ +  +  ++     d    e++r ++i s+  +    +        n+id PGh+ ft e    +r  dG v+v+dav Gv   +e + + a   ++P ++ +nk+d++
  MMETSP1174-20130828|38586_1 136 IRNVAMVGQFHHGKTLFMD-ILVQQSQEKDFDPEKEIRY-TDCRMDEQQRELSIKSTPVSLVLANsncksLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRL 269
                  6888888888888877665.6666666665554444332.233333555555555555444333323333779*************************************************************97 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 4.1e-13
    TIGR00484 328 rvysGvlksGsevln.....sr.kekkervgrlvkm...hankreeieevraGdiaaliGlkd....tttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkref.kvevnvGkPqvayretirkkae 490
                  rv+sG+++ G+ev+      s   e+   v  +  +     + r +++ev aG+ + l G++     t+t  t + +++e+     + +  v++laveP + a+  km   l ++++  P   + + eesg+ +i G Gel ld i++ l+  + ++ev+v  P  a+ et+ +++ 
  MMETSP1174-20130828|38586_1 504 RVFSGTVRVGQEVKVlgeafSLdDEEDMAVCEVTGLsigEGRYRLDVQEVGAGNWIMLQGVDApinkTATITTSTVNDVEIFRPLAFNTSAVMKLAVEPLNPAELPKMVEGLRRISKSYPLSGTKV-EESGEHVILGTGELSLDCIMHDLRSMYsDIEVKVADPVTAFCETVVETSA 679
                  7777777777776641111111012222333333331114567899************998652111444444444555554444455678*****************************887776.69*********************9988469**************988765 PP

  == domain 3    score: 45.4 bits;  conditional E-value: 2.8e-15
    TIGR00484 590 eavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseer..esvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPk 679
                   a+  a P l+eP+ ++++++P + +  ++  l+rrrg +     +    +  vka +P  + fG+ tdlr++tqG+a   m f++++ vP 
  MMETSP1174-20130828|38586_1 826 SAFLMATPRLMEPVFEMQIQAPADVVSSIFPVLARRRGHVVQDSPKpgAPFYSVKAYIPAIDSFGFETDLRAFTQGQAMCYMVFDHWSIVPG 917
                  578899********************************986554441166899**********************************99996 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   4.5e-22   1.1e-19       3     133 ..     136     267 ..     134     280 .. 0.93
   2 ?   -3.1   0.0       1.6     4e+02     210     228 ..     504     522 ..     499     616 .. 0.68
   3 ?    1.6   0.0     0.059        15     397     430 ..     834     867 ..     826     903 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 4.5e-22
    TIGR01393   3 irnfsiiahidhGkstladrllektkavs.erelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkid 133
                  irn++++    hGk+ + d l+++++  + + e++ ++ d    e++r + ik+++v l   +++ ++   n+id PGh  f+ e +  + a++G++l+vda+ Gv   t   + +al ++l ++ vink+d
  MMETSP1174-20130828|38586_1 136 IRNVAMVGQFHHGKTLFMDILVQQSQEKDfDPEKEIRYTDCRMDEQQRELSIKSTPVSLVLANSNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVD 267
                  9**********************999877355666788997666***************************************************************************************9 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.6
    TIGR01393 210 rvveGkikkgdkikllstg 228
                  rv++G++++g+++k+l   
  MMETSP1174-20130828|38586_1 504 RVFSGTVRVGQEVKVLGEA 522
                  8999999999999998543 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.059
    TIGR01393 397 eveePyvkatiivpeeylgailelcqekrgvlkk 430
                  ++ eP+ +++i +p++++++i+ ++ ++rg++++
  MMETSP1174-20130828|38586_1 834 RLMEPVFEMQIQAPADVVSSIFPVLARRRGHVVQ 867
                  578***************************8765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.8e-14   4.5e-12      59     146 ..     178     270 ..     155     296 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.8e-14
    TIGR00503  59 emekqrGisitts....vl.qfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdi 146
                    e+qr +si ++    vl + + +  l n++d pGh  f++++   + a+d +++v+da  Gv   t k+++++ l +lp++  +nk+dr  
  MMETSP1174-20130828|38586_1 178 MDEQQRELSIKSTpvslVLaNSNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRLL 270
                  4599******9873322231234566799*************************************************************965 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   3.4e-09      14     140 ..     138     268 ..     126     275 .. 0.84
   2 !    5.1   0.0    0.0068       1.8     227     283 ..     500     565 ..     478     582 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.3e-11
    TIGR00485  14 nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahvey.....etekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl 140
                  nv  +g   hgkt +   +++  +++     k+    d   +e++r ++i+++ v       ++++     +dcpgh  +  +  +g    dg +lvv a +g+m  t + i +a    +p  v+ +nkvd 
  MMETSP1174-20130828|38586_1 138 NVAMVGQFHHGKTLFMDILVQQSQEKDFDPEKEIRYTDCRMDEQQRELSIKSTPVSLvlansNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPL-VLVINKVDR 268
                  999**********99999999999998888999999999************998865221112333345679******************************************99999995.556899985 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0068
    TIGR00485 227 vvtgrvergevkvgeeveivglk.......etkkttvtgvem..fkklldeakagdnvgvllrgvk 283
                     grv  g+v+vg+ev+++g         ++  + vtg+ +   +  ld  + g    ++l+gv+
  MMETSP1174-20130828|38586_1 500 HSLGRVFSGTVRVGQEVKVLGEAfslddeeDMAVCEVTGLSIgeGRYRLDVQEVGAGNWIMLQGVD 565
                  467*****************9543343322333445677665223556777777766667777765 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.98   2.5e+02      89     108 ..     138     157 ..      85     162 .. 0.63
   2 !   39.3   0.0   2.9e-13   7.5e-11     138     199 ..     207     268 ..     196     278 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.98
    TIGR00487  89 vvtimGhvDhGktsLLdsir 108
                   v+++G   hGkt ++d + 
  MMETSP1174-20130828|38586_1 138 NVAMVGQFHHGKTLFMDILV 157
                  37899********9999875 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2.9e-13
    TIGR00487 138 tflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDk 199
                    +D PGh +ft   a G +++D vvlvv a +Gv+  t+  i+ a   + P++++ink+D+
  MMETSP1174-20130828|38586_1 207 NIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDR 268
                  579**********************************************************7 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.1e-13   5.5e-11       2     116 ..     138     269 ..     137     288 .. 0.85
   2 ?   -2.7   0.1       1.5   3.7e+02     196     212 ..     503     519 ..     502     521 .. 0.89

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2.1e-13
    TIGR00475   2 iiataGHvDHGKttLlkaltgid.............adrlPeEkKRGltiDlGyaylpled.....kvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrv 116
                  ++a+ G   HGKt  +  l + +             +d + +E++R l+i     +l l +        ++iD PGH  f  +a ag+ ++d+++Lvvda eGv+  t+  ++++ l +++ l+ v++K+Dr 
  MMETSP1174-20130828|38586_1 138 NVAMVGQFHHGKTLFMDILVQQSqekdfdpekeiryTDCRMDEQQRELSIKSTPVSLVLANsncksLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLP-LVLVINKVDRL 269
                  5889999999999877777766666668899999999999999999999986666666655444225679**************************************9999998888888.9********95 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.5
    TIGR00475 196 GtafsGevkvgDelvle 212
                  G +fsG+v+vg e+ + 
  MMETSP1174-20130828|38586_1 503 GRVFSGTVRVGQEVKVL 519
                  889**********9986 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.3e-12   3.3e-10       4     124 ..     137     268 ..     135     302 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 1.3e-12
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt.....................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDl 124
                  +++++vG+  +GK+  ++ l +++  ++  +p      t+      ++ d ++                        n++D +G+  f       + e+++ ++ +d+v+lv+d+ eg++  t++ i+ a  ++ p++lv+nK+D 
  MMETSP1174-20130828|38586_1 137 RNVAMVGQFHHGKTLFMDILVQQS-QEKDFDPekeiRYTD------CRMDEQQrelsikstpvslvlansncksLLCNIIDCPGHLSF-------TDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDR 268
                  699**********87766666666.666555655332232......3333333334455999***********99*************.......**************************************************6 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.1e-09   2.8e-07      73     134 ..     208     269 ..     135     292 .. 0.86
   2 ?   -4.0   0.0       3.1   7.9e+02     345     382 ..     627     665 ..     616     681 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.1e-09
    TIGR00491  73 vidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidri 134
                  +id PGh  ft     G   ad  +lvvd +eG+   t+  +++    k P+v+  nk+dr+
  MMETSP1174-20130828|38586_1 208 IIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRL 269
                  7***********************************************************96 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 3.1
    TIGR00491 345 ikievddeGilvkadtlGslealvnelrkag..vkikkae 382
                   k+e + e +++ +  l sl+ ++++lr ++  +++k+a+
  MMETSP1174-20130828|38586_1 627 TKVEESGEHVILGTGEL-SLDCIMHDLRSMYsdIEVKVAD 665
                  56777777788888877.8999999999986336667776 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.7e-09   1.7e-06      84     144 ..     208     267 ..     199     291 .. 0.90
   2 ?    0.3   0.0      0.24        61     237     256 ..     503     522 ..     480     527 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6.7e-09
    TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkid 144
                  + d+PGh  +t + a+g  +ad +vl+vda +Gv+  t +   + +ll    +vl +nk+d
  MMETSP1174-20130828|38586_1 208 IIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGVMLGTEKMIQM-ALLEKLPLVLVINKVD 267
                  67************************************987665.68888899*******9 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.24
    TIGR02034 237 GtiasGsvkvGdevvvlpsg 256
                  G + sG+v+vG+ev+vl ++
  MMETSP1174-20130828|38586_1 503 GRVFSGTVRVGQEVKVLGEA 522
                  8899************9775 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   8.2e-08   2.1e-05      73     154 ..     192     269 ..     136     296 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 8.2e-08
    TIGR00483  73 idvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
                  + + ++  + +     i+d+pgh  f  +  +g   ad  vlvv++ +g   v+  t + + +a  l    l++ ink+d++
  MMETSP1174-20130828|38586_1 192 VSLVLANSNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEG---VMLGTEKMIQMA-LLEKLPLVLVINKVDRL 269
                  5566666677777889*******************************99...776665555444.56666788999999986 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.3e-07   5.9e-05       7     147 ..     138     268 ..     132     291 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.3e-07
    TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl 147
                  n+++vG   hGkt  +  l     ++  +         + y+d+ + + ++  + +   ++ +  +    +       ++D+PGh ++     +G    dg +Lv++a e v     +e ++ + ++    +v+v nk+d 
  MMETSP1174-20130828|38586_1 138 NVAMVGQFHHGKTLFMDILVQQSQEKDFDPE-----KEIRYTDCRMDEQQRELSIKSTPVSLVLAN---SNCKSLLCNIIDCPGHLSFTDEAAAGMRAADGVVLVVDAVEGV--MLGTEKMIQMALLEKLPLVLVINKVDR 268
                  899**********999988765554444333.....345699999887755443333333333333...2223445689*********************************..45668999999**************95 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     7e-07   0.00018     251     299 ..     221     269 ..     214     296 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 7e-07
    TIGR03594 251 tlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv 299
                  +   ++ ad v+lv+Da eg+    +k+++++l e+ +lv+v+NK+D +
  MMETSP1174-20130828|38586_1 221 AAAGMRAADGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRL 269
                  4455667777777777777777777777777777777777777777765 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.9   7.3e+02      18      42 ..     136     160 ..     123     162 .. 0.81
   2 ?    9.5   0.1   0.00061      0.16     102     144 ..     229     271 ..     223     298 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.9
    TIGR03598  18 lpeiafaGrSNvGKSsliNaLtnrk 42 
                    ++a++G+   GK  ++  L+++ 
  MMETSP1174-20130828|38586_1 136 IRNVAMVGQFHHGKTLFMDILVQQS 160
                  4689***********9999999986 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00061
    TIGR03598 102 kgvvllvDirhelkelDlellellkeakipvlvvltKaDklkk 144
                   gvvl+vD+  +++   +++++++  +k+p+++v++K+D+l  
  MMETSP1174-20130828|38586_1 229 DGVVLVVDAVEGVMLGTEKMIQMALLEKLPLVLVINKVDRLLL 271
                  689************************************9864 PP

>> TIGR04057  SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00041      0.11      10      28 ..     219     234 ..     217     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00041
    TIGR04057  10 DAsAaAiYGsrgANGVIlI 28 
                  D +Aa   G+r+A GV+l+
  MMETSP1174-20130828|38586_1 219 DEAAA---GMRAADGVVLV 234
                  66777...**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.89u 0.22s 00:00:01.11 Elapsed: 00:00:00.80
# Mc/sec: 1618.52
//
Query:       MMETSP1174-20130828|38590_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 670.50
//
Query:       MMETSP1174-20130828|38591_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1090.13
//
Query:       MMETSP1174-20130828|38592_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-33  111.7   9.7    1.2e-32  111.4   6.7    1.1  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   6.7   2.9e-36   1.2e-32       2     190 ..     160     354 ..     159     355 .. 0.88

  Alignments for each domain:
  == domain 1    score: 111.4 bits;  conditional E-value: 2.9e-36
    TIGR03592   2 yglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekyk.....ed...rqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsie....lrkapflwiedlsspdptveatiallaiyilpvlaglttflqqkls...apkp.adpaqqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                  y  +I+++tl +r++llp+++k+++++ +m +++p+l+ + e+ k     +d   ++   q+m++l+ +++ +p+ ++L  + Q+Pi+++ +  l +  +    + +   lw++dl+++dp          +yi+pv+ ++t++l+ ++    ++++ a+ +q k+++  m vm++ m++f+p g+  Yw  +n+f+++qql+++
  MMETSP1174-20130828|38592_1 160 YWASIVAFTLALRTMLLPVAIKTMQNSSRMAIMKPELELVTERIKadpqqNDpkrQAMYRQQMQALFAKHQCSPFKSLLMPMCQIPIFMSCFFGLRQMGDyypdFAEGGTLWFTDLTASDP----------TYIFPVVTAATFILMVEIGadgMQQQgAQAQQFKMIMRGMGVMMVPMTYFMPCGVFCYWSAANTFSLTQQLLLK 354
                  6789*****************************************77777443213346799*********************************4443344446788888**********..........99***************98677444436677***************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1562.47
//
Query:       MMETSP1174-20130828|38602_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   13.9   2.1      0.003   13.8   1.4    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
  ------ inclusion threshold ------
      0.013   12.9   0.5      0.013   12.8   0.4    1.2  1  TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.4   1.5e-06     0.003     482     539 ..      12      72 ..       4      79 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-06
    TIGR02350 482 katgkeqsititassglseeeiermvkeaeanaeedkkkkee...vearneadsliyqaek 539
                  ++ gk  +iti+++s+l++++i r+ ++ ++ +e+ +k+ e+   + a+ +a +l++q e 
  MMETSP1174-20130828|38602_1  12 LQVGKTANITIETASKLKSKDIVRLERQVQHSKEQMQKSTEKgqnLVAQAQAKTLVVQEEV 72 
                  6789******************999888888888877776651114456777777776654 PP

>> TIGR03761  ICE_PFL4669: integrating conjugative element protein, PFL_4669 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   6.5e-06     0.013      61      97 ..      32      69 ..       4      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.5e-06
    TIGR03761 61 allklEekveeaskelqelleklekllae.lpealels 97
                  +++lE +v+++++++q+ +ek ++l+a+   ++l ++
  MMETSP1174-20130828|38602_1 32 DIVRLERQVQHSKEQMQKSTEKGQNLVAQaQAKTLVVQ 69
                 589***********************999555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       620  (0.151146); expected 82.0 (0.02)
Passed bias filter:                      304  (0.0741102); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1174-20130828|38600_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-15   52.4   0.0      6e-15   52.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.2e-06   23.0   0.0    1.5e-05   22.4   0.0    1.3  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    2.1e-05   21.9   0.0    4.3e-05   20.9   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   4.4e-18     6e-15       2     187 ..     496     682 ..     495     700 .. 0.84

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 4.4e-18
    TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlq......vLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedad..eatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  tg++ aik + + +   + + +  + e ++ +  +hP i +L+   +  d  l+ v +y++   l ++L  + +    + ++ ml       + +++a+ h++Gv +RDLkP+ni++   d +s   v+D G++ + p +  +d  e+   rt  + G+ +Y aPe   g     + D++a G ++ e   G++
  MMETSP1174-20130828|38600_1 496 TGNEYAIKAMSKVQIITNNHCKQVQHEKEILQMFHHPFILRLVTTMQDAD-SLYLVTDYIPSIALFDLLYVNPP---PTRVKPMLNrywaaiIAESIAHFHAHGVAYRDLKPENILI---DATSYITVIDAGLAKVIPYTSVVDgeETLQDRTYTLCGTIEYLAPEFFAGHGYNHAVDYWALGCLIYEMAVGRT 682
                  89999********99999999**********************9877666.9*****************98754...3333333321222227799********************9...5678899**********98776652155556888899**************************99999888875 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-08   1.5e-05       8     104 ..     194     281 ..     187     294 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.1e-08
    TIGR03896   8 sesreiaaettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaaklqsdva 104
                   e+  ++a+ tLieeG+   ++f +++G+++v      d+++     ++ ++ G++vGe +ll +    at+k +    l s+ ++++ ++ + + a
  MMETSP1174-20130828|38600_1 194 LEKVVLQAGETLIEEGEDGHNMFFVQEGTLSVY----RDGTV-----VGGVKAGDVVGELALLYNEKRSATVKTESTCILWSLSRKAFHSIQATQSA 281
                  555667788889999999999999999998886....35555.....78889999999999998888889999988888888888888887766554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.1e-08   4.3e-05      94     138 ..     579     624 ..     536     639 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.1e-08
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                    +  ++e +++ H +g+++ Dl ++Ni+++ ++ +++iD GL+k+
  MMETSP1174-20130828|38600_1 579 YWAAIIAESIAHFHAHGVAYRDLKPENILIDaTSYITVIDAGLAKV 624
                  44566899**********************52677899*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.59
# Mc/sec: 1818.77
//
Query:       MMETSP1174-20130828|38604_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1174-20130828|38601_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 914.82
//
Query:       MMETSP1174-20130828|38605_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 384.97
//
Query:       MMETSP1174-20130828|38603_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   26.3   0.0    3.7e-06   24.9   0.0    1.8  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.1e-10   3.7e-06       3      71 ..     328     396 ..     326     437 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 9.1e-10
    TIGR00229   3 seeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle 71 
                  se  y+ ++ +++ a+++++ +G +++ N++f+  +G s +e+   +++ li +e  +++   ++  l 
  MMETSP1174-20130828|38603_1 328 SESTYKHVFRKAALAMAIANTDGLMVECNTSFCNASGISLDEISQISMFALIRPEFLQKTYTWMSLVLN 396
                  899********************************************************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 1170.47
//
Query:       MMETSP1174-20130828|38607_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   25.5   0.0    1.6e-06   25.2   0.0    1.1  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.9e-10   1.6e-06     220     299 ..      37     119 ..      23     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.9e-10
    TIGR00747 220 lAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvkt...vekygntsAasiplaldelleegkik 299
                  + +++++  v++ l++ ++kked+d+   H    Riie +++ l l+ee+   +   +++ygn    s+   l+ +++e++ k
  MMETSP1174-20130828|38607_1  37 YIAKNMAGYVDSFLAKHDMKKEDVDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSwevLDQYGNMLSPSVMFVLELVMREHNEK 119
                  5678999******************************************98654222789*********99999888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1174-20130828|38608_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1266.27
//
Query:       MMETSP1174-20130828|38609_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1174-20130828|38612_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|38615_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.0   0.0        3.1    5.6   0.0    2.1  2  TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR03130  malonate_delta: malonate decarboxylase acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0   0.00091       3.7      77      94 ..       5      22 ..       2      26 .. 0.84
   2 ?    5.6   0.0   0.00076       3.1      75      92 ..      27      44 ..      19      49 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00091
    TIGR03130 77 inDfgAtPavvsLRLeqa 94
                 i+ f AtP++v+L Le+ 
  MMETSP1174-20130828|38615_1  5 IEVFQATPNLVNLDLEDC 22
                 77799********99976 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.00076
    TIGR03130 75 ieinDfgAtPavvsLRLe 92
                  +i+ f AtP++v+L L+
  MMETSP1174-20130828|38615_1 27 GNIEVFQATPNLVNLNLS 44
                 578889*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 259.85
//
Query:       MMETSP1174-20130828|38611_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 1889.09
//
Query:       MMETSP1174-20130828|38614_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1797.78
//
Query:       MMETSP1174-20130828|38619_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 206.59
//
Query:       MMETSP1174-20130828|38610_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-49  162.9   0.1    8.2e-49  162.7   0.1    1.0  1  TIGR03673 rpl14p_arch: 50S ribosomal protein L14P
    1.9e-20   70.8   0.1    2.3e-20   70.5   0.0    1.1  1  TIGR01067 rplN_bact: ribosomal protein L14


Domain annotation for each model (and alignments):
>> TIGR03673  rpl14p_arch: 50S ribosomal protein L14P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.1     4e-52   8.2e-49       3     130 ..      12     139 ..      10     140 .] 0.97

  Alignments for each domain:
  == domain 1    score: 162.7 bits;  conditional E-value: 4e-52
    TIGR03673   3 irakvtralevgalvkvaDnsGaklvevisvkkykgvkrrlpaagvgDlvvvsvkkGtpelrkqvlkavvvrqrkeyrrpdGtrvkfeDnavvivteegepkGseikgpvareaaerfpkiasiasii 130
                   ++++t +l+vga +++aDn+G k + +isv ++ g+ +rlpaa+ gD+v++svkkG+pelrk+v+ a+vvrqrk +rr++G+ + feDna viv+++ge+kGs + gpva+e a+++p+ias a  i
  MMETSP1174-20130828|38610_1  12 AKYRMTLGLPVGACINCADNTGGKNLFIISVYGVGGRLNRLPAASPGDMVMASVKKGKPELRKKVTPAIVVRQRKAWRRKEGVFIFFEDNAGVIVNNKGEMKGSAVMGPVAKECADQWPRIASNAGSI 139
                  5788999*******************************************************************************************************************998655 PP

>> TIGR01067  rplN_bact: ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   1.1e-23   2.3e-20       7     118 ..      25     136 ..      21     140 .] 0.85

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 1.1e-23
    TIGR01067   7 rlkvaDnsGakkvecikvlg..gskkr..yakvGdvivvvvkkaipkkkvkkgdvvkavivrtkkevrRkdGstvkfddnacvllnkkkePlGtRifgpvarelrekgflkivsla 118
                   ++ aDn+G k++ +i v g  g  +r   a+ Gd+++++vkk +p+ +    +v+ a++vr +k  rRk+G+ + f+dna v++n+k+e +G  ++gpva+e  + ++ +i+s a
  MMETSP1174-20130828|38610_1  25 CINCADNTGGKNLFIISVYGvgGRLNRlpAASPGDMVMASVKKGKPELR---KKVTPAIVVRQRKAWRRKEGVFIFFEDNAGVIVNNKGEMKGSAVMGPVAKECAD-QWPRIASNA 136
                  6899**************986333333225889*************974...569************************************************976.467777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 710.71
//
Query:       MMETSP1174-20130828|38617_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-10   36.1   0.7     0.0018   15.2   0.1    3.1  3  TIGR00435 cysS: cysteine--tRNA ligase
    2.3e-05   20.7   0.1    3.7e-05   20.0   0.1    1.2  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00019      0.39     420     460 ..     215     255 ..     197     259 .. 0.87
   2 !   15.2   0.1     9e-07    0.0018     418     459 ..     285     327 ..     269     334 .. 0.81
   3 !   10.3   0.0   2.9e-05     0.058     409     463 ..     346     399 ..     335     402 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00019
    TIGR00435 420 eledlieersearkkkelkkaDkiRdellkkgivLeDtpnG 460
                   ++ l++ r +a+ kk++++aDk+ ++l+ +g+++ ++p+ 
  MMETSP1174-20130828|38617_1 215 RVHTLLATRLQAKLKKNFREADKLEESLALLGVTVREKPEK 255
                  56678899**************************9999875 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 9e-07
    TIGR00435 418 lgeledlieersearkkkelkkaDkiRdellk.kgivLeDtpn 459
                  ++ +++li +r  a+ +k+++ aD+iR +l + + ++L+D+++
  MMETSP1174-20130828|38617_1 285 VDLVNQLISDRLVAKVEKDYETADQIRAKLEEeLSVILDDKRK 327
                  4557899**********************98626899999865 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 2.9e-05
    TIGR00435 409 vqagsnddelgeledlieersearkkkelkkaDkiRdellkkgivLeDtpnGtal 463
                  +++  ++ +l+ +++l+++  +a++  ++++aD++ +el + g+v++D   G+ +
  MMETSP1174-20130828|38617_1 346 LESTLSETSLKTINELLARTYKAKRFGDFNEADAAQEELRSFGVVINDS-MGSLW 399
                  56667788999*************************************9.88877 PP

>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.8e-08   3.7e-05     549     582 ..      48      81 ..      43      83 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.8e-08
    TIGR00578 549 GtlgkltvsvlkdickaeGlrsgskkqelldalk 582
                  G   k+tv vlk++c+++Gl+ ++ kqelld l 
  MMETSP1174-20130828|38617_1  48 GSPKKITVKVLKEMCRERGLKVSGTKQELLDRLS 81 
                  66679**************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 1466.15
//
Query:       MMETSP1174-20130828|38620_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1481.21
//
Query:       MMETSP1174-20130828|38618_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.1   1.0    1.8e-05   21.6   0.7    1.1  1  TIGR00959 ffh: signal recognition particle protein
    0.00096   15.9   0.3     0.0017   15.1   0.2    1.5  1  TIGR01425 SRP54_euk: signal recognition particle protein SRP54


Domain annotation for each model (and alignments):
>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.7   8.9e-09   1.8e-05     301     423 ..      54     174 ..      50     178 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8.9e-09
    TIGR00959 301 sLvekaeevvdeeeakklaeklakeefdleDlleqlrqikklGslskllk....mlPglgkvkksekdldedekklkrieaiissmtkeErknp.kiln.asRkkRiakGsGtsvsdvnklikefeqak 423
                  s++  +++ +++++ k+ +ek+ ++ ++l      l+  +   +l++ ++    m+Pg++    s+     + +kl+ ++ ii +mt+eE++ p ++l+     +R+a+ s ts +dv  ++++f+ ++
  MMETSP1174-20130828|38618_1  54 SILSSMQDSLTDRKDKQEQEKFREQVLKLANGKGALTITEWGAELDEAMSswrmMIPGAK----SQP----EVEKLAIFRKIIAAMTPEEKERPfQMLQnSATLQRVASSSDTSADDVASMLQRFKMIS 174
                  566667777777777777777777777777777776554444445444433333888864....222....335699999***********98746777356789********************9776 PP

>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   8.5e-07    0.0017     350     427 ..     107     175 ..      52     176 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.5e-07
    TIGR01425 350 smipGlssellskgneeessaklkkllvildsmtdkeldstdkvllkeesrivrvarGsGraireveelleqykklak 427
                   mipG        ++++   +kl  +  i+ +mt +e +   ++l +  + ++rva  s ++  +v ++l+++k++++
  MMETSP1174-20130828|38618_1 107 MMIPG--------AKSQPEVEKLAIFRKIIAAMTPEEKERPFQMLQN-SATLQRVASSSDTSADDVASMLQRFKMIST 175
                  34444........445556778999999*********9988876665.899***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1082.99
//
Query:       MMETSP1174-20130828|38622_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1470.21
//
Query:       MMETSP1174-20130828|38624_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1174-20130828|38625_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 1736.70
//
Query:       MMETSP1174-20130828|38627_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   13.0   1.1      0.057   12.3   0.6    1.4  1  TIGR01445 intein_Nterm: intein N-terminal splicing region


Domain annotation for each model (and alignments):
>> TIGR01445  intein_Nterm: intein N-terminal splicing region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.4e-05     0.057      10      77 ..      25      89 ..      15      90 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
    TIGR01445 10 ledGelikieelvekakekgedngl...ikvlsldgeevikkksvavwkrkgegkliriktkngreitaTp 77
                 +++Ge  +++   e++++ +e       i +l+ +g ++ik++++ + k   ++k ++ +t + ++it+T 
  MMETSP1174-20130828|38627_1 25 TKEGE-ATLQRRAENKEK-YE---AakrIVDLKAEGMQTIKAREM-AAKAYESQKPAETTTSSAETITLTA 89
                 55665.555555555432.22...133488888899*******99.89989999***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 614.43
//
Query:       MMETSP1174-20130828|38628_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 485.38
//
Query:       MMETSP1174-20130828|38630_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|38632_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|38633_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 1668.20
//
Query:       MMETSP1174-20130828|38635_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 720.86
//
Query:       MMETSP1174-20130828|38639_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1174-20130828|38637_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 335.97
//
Query:       MMETSP1174-20130828|38634_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-07   27.7   0.0    4.5e-05   21.0   0.0    2.3  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
     0.0013   15.7   0.0      0.013   12.3   0.0    2.1  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
     0.0025   14.8   0.1     0.0041   14.0   0.0    1.3  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent


Domain annotation for each model (and alignments):
>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0041       5.6     196     223 ..     208     235 ..     192     256 .. 0.82
   2 !   21.0   0.0   3.3e-08   4.5e-05     310     342 ..     384     416 ..     375     422 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0041
    TIGR02410 196 lFHlLkhdgtGGetvlvDvfkvaeklkk 223
                   F + k++ +GGe  l+D+ +++ +++ 
  MMETSP1174-20130828|38634_1 208 AFVCFKPADEGGEFLLCDGRQMIRTVEP 235
                  699****************999877654 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.3e-08
    TIGR02410 310 enevevklkpGevlifDnwRvlHaRtsFtGkRr 342
                  en  +vk+k G+v+++Dn+  +H+R+ F G R+
  MMETSP1174-20130828|38634_1 384 ENMKWVKMKHGDVVLLDNYMTMHGRNIFSGVRK 416
                  78899**************************98 PP

>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.032        43     205     250 ..     209     251 ..     196     269 .. 0.79
   2 !   12.3   0.0   9.6e-06     0.013     312     340 ..     385     413 ..     350     421 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.032
    TIGR02409 205 LhclestveGGdsllvDGFavaeaLrkekpeafkiLsstsvefree 250
                    c + + eGG+ ll DG +    +r+ +p++ + L ++ v+f+ +
  MMETSP1174-20130828|38634_1 209 FVCFKPADEGGEFLLCDGRQ---MIRTVEPDILENLYEKQVRFIAA 251
                  679999************75...56777888888888888888776 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.6e-06
    TIGR02409 312 lkltfkleeGdlvlfdntRllHaRdafea 340
                  ++   k+++Gd+vl+dn   +H+R+ f+ 
  MMETSP1174-20130828|38634_1 385 NMKWVKMKHGDVVLLDNYMTMHGRNIFSG 413
                  455679*********************95 PP

>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     3e-06    0.0041     262     299 ..     375     412 ..     359     421 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3e-06
    TIGR03946 262 ldaliklidaklrevvldqGdvafidnrravhGrrafr 299
                  l a+ k +  +++ v +++Gdv+++dn+ ++hGr  f 
  MMETSP1174-20130828|38634_1 375 LAAIDKAVMENMKWVKMKHGDVVLLDNYMTMHGRNIFS 412
                  56788999999***********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.60
# Mc/sec: 930.52
//
Query:       MMETSP1174-20130828|38640_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1174-20130828|38641_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 336.80
//
Query:       MMETSP1174-20130828|38642_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 180.87
//
Query:       MMETSP1174-20130828|38638_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.8  12.6      0.001   16.4   8.7    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   8.7   2.5e-07     0.001     142     213 ..      82     142 ..      65     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.5e-07
    TIGR02349 142 rkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvk 213
                   +++C+ C+G G        +C  C G G+v+ ++++   + ++  +C+eC+G+G+i   +C +CkG+gr++
  MMETSP1174-20130828|38638_1  82 VRAQCPYCNGDGRI------SCAVCLGGGSVMISNSQ--DASSTVCECKECSGSGRI---TCVNCKGDGRNT 142
                  4689*******986......7*********9988874..77888899********99...599****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 698.26
//
Query:       MMETSP1174-20130828|38645_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 846.93
//
Query:       MMETSP1174-20130828|38646_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|38643_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1359.49
//
Query:       MMETSP1174-20130828|38650_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1174-20130828|38651_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1174-20130828|38649_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-20   69.0   0.0    6.8e-20   68.9   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    7.8e-05   19.7   0.0     0.0044   13.9   0.0    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
  ------ inclusion threshold ------
      0.039   10.9   0.0        3.3    4.5   0.0    2.2  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   4.9e-23   6.8e-20     166     269 ..      77     184 ..      23     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 4.9e-23
    TIGR01642 166 laveqqatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaed.....gkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpeatp 269
                   av  q tr+ Rrlyvgn+ p+++   +++F+n+ + +  +    +     ++av++v i    ++af+Ef t e at a++l +i + n slki Rp++Y  + + + 
  MMETSP1174-20130828|38649_1  77 HAV-TQQTRQERRLYVGNLTPGVTTAHLSEFLNKCMETCLTGAGAKlpeqyTQAVLSVWIGPSTNYAFVEFVTKECATIAIGLSGIEFMNSSLKISRPNNYANSSQSNS 184
                  344.4568***************************9876544443345789**************************************************98776544 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0036       4.9     216     239 ..      83     106 ..      70     112 .. 0.75
   2 !   13.9   0.0   3.2e-06    0.0044     163     212 ..     141     190 ..     134     212 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0036
    TIGR01622 216 siadlkLYvGnlhfnitEqeLrqi 239
                  +  +++LYvGnl   +t  +L + 
  MMETSP1174-20130828|38649_1  83 TRQERRLYVGNLTPGVTTAHLSEF 106
                  45689*******999998888765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.2e-06
    TIGR01622 163 vaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgd 212
                   a+vEF+++e  + A++l+G  +++  +++   +   N  ++++t l  +
  MMETSP1174-20130828|38649_1 141 YAFVEFVTKECATIAIGLSGIEFMNSSLKISRPNNYANSSQSNSTALASQ 190
                  699****************************9999999999999987754 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0024       3.3     285     309 ..      86     110 ..      73     116 .. 0.62
   2 ?    4.3   0.0    0.0028       3.9     126     147 ..     136     157 ..     128     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0024
    TIGR01628 285 gvNlYvkNlddtvddekLrelFeef 309
                     lYv Nl ++v+ ++L e  +++
  MMETSP1174-20130828|38649_1  86 ERRLYVGNLTPGVTTAHLSEFLNKC 110
                  5556666666666666666555555 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0028
    TIGR01628 126 GkSkgYgfvhfedeesAkeAie 147
                  G S  Y+fv+f ++e A+ Ai 
  MMETSP1174-20130828|38649_1 136 GPSTNYAFVEFVTKECATIAIG 157
                  88999************99984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 781.23
//
Query:       MMETSP1174-20130828|38647_1  [L=900]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.18s 00:00:00.73 Elapsed: 00:00:00.51
# Mc/sec: 2329.22
//
Query:       MMETSP1174-20130828|38653_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 507.65
//
Query:       MMETSP1174-20130828|38656_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 556.24
//
Query:       MMETSP1174-20130828|38659_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   35.7   0.0    1.1e-09   35.5   0.0    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.1e-06   25.8   0.0    1.4e-06   25.4   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    1.2e-06   25.4   0.0    1.6e-06   25.0   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.2e-05   22.3   0.0    1.6e-05   21.8   0.0    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.1e-12   1.1e-09     271     399 ..     162     283 ..      81     286 .] 0.84

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 1.1e-12
    TIGR01941 271 aelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcGpplmnaaviklledlGverenil 399
                  ++++  + G+G++p+r+ i     rl   r   ++yGar +  + y++ fd+ e+     +   +ls  +pe  +tG+ g++ ++l  + +    +p ++   mcG   m+ av+++++  G  ++ +l
  MMETSP1174-20130828|38659_1 162 QNILLFAAGSGISPIRAAIESESMRLPEGRSCTLYYGARDLSTMAYKDLFDSWEKL--GVTVCPVLS--QPEGDYTGRKGYVQDILKADGV---TTPRNTGALMCGMKEMAEAVKEIMTTAGAAEDRVL 283
                  56778899******************************************997754..344445666..78999************98765...6899999*********************9998876 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.4e-09   1.4e-06      77     209 ..     131     271 ..      98     285 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.4e-09
    TIGR02911  77 kegdklflrgpygngfdv....dnykd....kelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkek.inlvltldeaeeddkykvglvtkyiaelklkdieevqvivvgppimlkftvkel 209
                  +e  ++ +  p g gf++    d++ +    +++++ a g+g++p++  +e  +    e ++ +l  g +   ++ +k+ ++ w++  + +   l + e+d+ ++ g v + ++   +    +  +++ g   m +  vke+
  MMETSP1174-20130828|38659_1 131 TESSDIIISPPMGKGFPItdkfDSFENsfpvQNILLFAAGSGISPIRAAIESESMRLPEGRSCTLYYGARDLSTMAYKDLFDSWEKLgVTVCPVLSQPEGDYTGRKGYVQDILKADGVTTPRNTGALMCGMKEMAEA-VKEI 271
                  5666677777888888764333333332222789**************************************************8751455557899**************99998898888888888888777654.4443 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.6e-09   1.6e-06     109     236 ..     161     282 ..     141     286 .] 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.6e-09
    TIGR02160 109 akhyvavaaGsGitPilaivktvlaaepkst.ftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvddaedalkalGvdsekv 236
                   ++ +++aaGsGi Pi a +++     p+ +  tl y+ r  +++ +++ l d  +k    +++  vls+ e +    +G + +     l +  +++ +   a +cG +++ + +++ ++++G ++++v
  MMETSP1174-20130828|38659_1 161 VQNILLFAAGSGISPIRAAIESESMRLPEGRsCTLYYGARDLSTMAYKD-LFDSWEK--LGVTVCPVLSQPEGDYTGRKGYVQD----ILKADGVTTPRNTGALMCGMKEMAEAVKEIMTTAGAAEDRV 282
                  467899************9999888777765278999998888877654.4444444..358999*****99987655555543....6778899999**************************99988 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.6e-08   1.6e-05     239     388 ..     125     274 ..     117     284 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.6e-08
    TIGR03224 239 nylcdlkkgdkvqvigpfgstflmpnh........pessilmictgtgsapmramterrrrrrakgeggklllffgartkeelpyfgplqklpkdfidinfafsrtpee...pkryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaea 388
                   +lcd      + +  p+g  f + ++        p  +il+  +g+g +p+ra  e    r+ +  g    l++gar  + + y   +    k  + +   +s+  ++    k yvqd ++     v+      nt   +cg+k m e v e +    ++
  MMETSP1174-20130828|38659_1 125 GWLCDATESSDIIISPPMGKGFPITDKfdsfensfPVQNILLFAAGSGISPIRAAIESESMRLPE--GRSCTLYYGARDLSTMAYKDLFDSWEKLGVTVCPVLSQPEGDytgRKGYVQDILKADG--VT---TPRNTGALMCGMKEMAEAVKEIM----TT 274
                  589999999999999999999977654111111116679******************99888877..455689************888888888888888778775554222688****997554..43...45688899*******98775544....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1217.71
//
Query:       MMETSP1174-20130828|38657_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 980.49
//
Query:       MMETSP1174-20130828|38661_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 294.78
//
Query:       MMETSP1174-20130828|38658_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 813.93
//
Query:       MMETSP1174-20130828|38660_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-14   51.6   0.5    2.1e-14   51.6   0.3    1.5  2  TIGR00009 L28: ribosomal protein L28


Domain annotation for each model (and alignments):
>> TIGR00009  L28: ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.3   5.2e-18   2.1e-14       9      57 ..      25      73 ..      23      74 .. 0.94
   2 ?   -3.8   0.1         1   4.1e+03       2       8 ..     100     106 ..     100     108 .. 0.70

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 5.2e-18
    TIGR00009  9 gKkplvGnnvshstrktkRrfkpNLqkkrvvvegegrvvrlkvsakaLr 57
                 gK  ++Gn+vshs+rkt+R++kpN+q+k++++e+ +  +r + +  a+r
  MMETSP1174-20130828|38660_1 25 GKDVRFGNKVSHSERKTRRMWKPNVQRKKLWSETLQDYLRFNMTVHAMR 73
                 99********************************999999998888877 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1
    TIGR00009   2 srkCelt 8  
                  ++kC++ 
  MMETSP1174-20130828|38660_1 100 AAKCKII 106
                  6789885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 578.72
//
Query:       MMETSP1174-20130828|38695_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 432.92
//
Query:       MMETSP1174-20130828|38737_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|38744_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 255.18
//
Query:       MMETSP1174-20130828|38771_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-15   53.8   0.3    5.8e-15   53.2   0.2    1.3  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.2   1.4e-18   5.8e-15       1      69 [.       1      66 [.       1      74 [. 0.94

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 1.4e-18
    TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                 +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1174-20130828|38771_1  1 MQIFVKTLTGKTITLDVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
                 8999*******************************...**************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 821.63
//
Query:       MMETSP1174-20130828|38790_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|38791_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 532.51
//
Query:       MMETSP1174-20130828|38804_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 227.98
//
Query:       MMETSP1174-20130828|38815_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   15.0   0.0     0.0063   14.7   0.0    1.3  1  TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE


Domain annotation for each model (and alignments):
>> TIGR02981  phageshock_pspE: phage shock operon rhodanese PspE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-06    0.0063      53      94 ..      65     107 ..      27     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.5e-06
    TIGR02981  53 vvp.dkndtvklycnagrqsgqakdillemgythvenagglkd 94 
                   +p dk   +  yc ag ++g++ + l+ +gyt   n   +++
  MMETSP1174-20130828|38815_1  65 LIPaDKGTPIVAYCAAGGRAGRCLQRLAVLGYTDLVNGVNVQQ 107
                  444377788999**********************999766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 317.34
//
Query:       MMETSP1174-20130828|38833_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 197.98
//
Query:       MMETSP1174-20130828|38873_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-77  258.9   5.2      2e-77  258.6   3.6    1.0  1  TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
    1.8e-18   64.8   1.9    4.2e-18   63.5   1.3    1.7  1  TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma


Domain annotation for each model (and alignments):
>> TIGR01146  ATPsyn_F1gamma: ATP synthase F1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   3.6   9.5e-81     2e-77       2     286 .]      43     321 ..      42     321 .. 0.95

  Alignments for each domain:
  == domain 1    score: 258.6 bits;  conditional E-value: 9.5e-81
    TIGR01146   2 aslkeirkrikSvkntkkITkAmklVaasklrraqerveaarpyaeklaevlknlaaklkevdhplllkkrevkkvlllvvtsdrGLcGgynsnvlkkveeklkelkeegkevklvviGkkgkeffkrr.einiaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplseke.eekkleeklefepd.eeeilesLlprylesqiyrallesaasElaaRmtAMdnAtdNAkdlikkltlsyNraRQaaITqElieivaGasal 286
                  a+ k+i +ri+S+ n kkIT++mk+V+a+k++  q+r+++a p+ +++++ l+++ ++ +e+d      ++ + k+l+++ +sd+GLcGg+ns + + +++    l++ gk+ kl+v G+kg+++++r+ +++i+++ t+ls  +tf+ a++ia++++++ + +e+d+v+++yn+fvs++++ ++v+++++l+ ++ +e    + +efepd ++e+le+L + +++sq++++++e+++sE+++R +AM+nA++NA++li++ltl+yN+aRQ  IT+Eliei++Gasal
  MMETSP1174-20130828|38873_1  43 ATEKQIAMRIASTGNLKKITSSMKMVSAAKMKGDQNRLAQAIPF-NAMNKTLNEAPQTVEEID-----VSSWPAKNLIITTSSDKGLCGGVNSYITRGLKKIEGLLAADGKDFKLIVSGEKGRAQLRRTfSDKIISANTDLSYPVTFSTASAIANEVTKV-DPEEYDAVHVIYNEFVSAIAYTTSVQTMMSLKGEGlDE--PLTGYEFEPDtKNEVLEDLKEHMIASQVFYSMMENYTSEQSSRTSAMENASKNAGELIDALTLQYNKARQTRITTELIEIISGASAL 321
                  7889************************************9998.567888888888666333.....44557889*********************************************************************************998.89*********************************766..5899******99*************************************************************************97 PP

>> TIGR03323  alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   1.3   2.1e-21   4.2e-18       5     285 .]      52     321 ..      48     321 .. 0.69

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 2.1e-21
    TIGR03323   5 iesaadLksvvrtmkalaavsirqYedavraLddYyetveLGLavvlreeelaaasasgkskkesgktgaivlGsDqGlvGqfnevlle...fvveelaelkgekevwavGervasrle....dsglkieelfalPnsvkaitalvsellievekvreqeelaelllffnrkesgasYeptsqrlLPlDea.WkkqlakkkWptkclPellgekeetlsalireylfvsLfraaaesLasenasrlaamqraeknidelldeLnrrfhrlrqsaideeLfdvvsGfeaL 285
                  i s  +Lk +   mk ++a++++  ++       + ++++  L    +e +++ ++   + +    k  +i   sD+Gl+G  n  ++    ++ + la + ++ ++ + Ge+  ++l     d+ +  +  +  P +     ++ s++  ev kv  + e   +++ +n+  s+  Y+   q ++ l  +   + l+  +++  +  e+l + +e    +i   +f s    + e   se +sr +am  a kn  el d L+ ++++ rq+ i+ eL++++sG  aL
  MMETSP1174-20130828|38873_1  52 IASTGNLKKITSSMKMVSAAKMKGDQNRLAQAIPF-NAMNKTL----NEAPQTVEEI--DVSSWPAKNLIITTSSDKGLCGGVNSYITRglkKIEGLLAADGKDFKLIVSGEKGRAQLRrtfsDKIISANTDLSYPVTF----STASAIANEVTKVDPE-EYDAVHVIYNEFVSAIAYTTSVQTMMSLKGEgLDEPLTGYEFEPDTKNEVLEDLKE---HMIASQVFYS----MMENYTSEQSSRTSAMENASKNAGELIDALTLQYNKARQTRITTELIEIISGASAL 321
                  66666677777777777766666655544333333.2333222....2222222222..233334467799999************986111344445577777889999**987776511114444555555555555....4555566666666544.55789**********************98651667799999998777777655444...4566666655....567889**********************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 991.45
//
Query:       MMETSP1174-20130828|38885_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 312.86
//
Query:       MMETSP1174-20130828|38886_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 319.97
//
Query:       MMETSP1174-20130828|38924_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-05   19.3   2.1    0.00013   18.9   1.4    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
    0.00014   18.9   0.3    0.00018   18.5   0.2    1.1  1  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.4   6.2e-08   0.00013     241     355 ..      79     202 ..      66     210 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.2e-08
    TIGR02037 241 kiqevtkdlakslglekakGalvaevlkgspAekaGlkaG...Dvilkvngkkiksaa..dlreaig..tlkpgkkvklkilRkgkekei.kvtlk.eaeeekasseksekkellglsvadlse 355
                   + evtk l   l+ +k+  ++va v +gs A+kaGlk+G    ++ +  g+++ s++   l++ ++  ++++g++vkl  + k +  +i k+++  +a++++ ++ ++e+k+ l +++++ ++
  MMETSP1174-20130828|38924_1  79 VVYEVTKPLGLVLEEDKEGNVFVAGVKPGSNAAKAGLKEGleiSMVSATFGNDMWSTKgaGLSRVMKaiKVRVGTSVKLVAMDKKNAAKIaKLNVMsAAKRRELEEAEQERKDRLLAEIKEETD 202
                  55667777777777888899********************433344555577776654214666555114568999988777665555442455543333333333333444433334433333 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   8.6e-08   0.00018      53     126 ..      87     168 ..      78     197 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.6e-08
    TIGR00225  53 iGiqvqmedd.eivivsplegsPAekagikpgDkIikvdgk......svagmelddavelirGkkgtkvkleierag.kkkt 126
                  +G+ ++++++ ++ +  +  gs A+kag+k g +I  v  +      s++g  l  ++++i+ + gt+vkl    ++   k+
  MMETSP1174-20130828|38924_1  87 LGLVLEEDKEgNVFVAGVKPGSNAAKAGLKEGLEISMVSATfgndmwSTKGAGLSRVMKAIKVRVGTSVKLVAMDKKnAAKI 168
                  68888887776899999999******************99999999************************976655423333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 650.74
//
Query:       MMETSP1174-20130828|38931_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   41.1   1.2    1.5e-11   40.8   0.9    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      0.004   13.2   0.2     0.0097   11.9   0.0    1.5  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.011   13.1   1.0       0.18    9.2   0.0    2.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.9   1.1e-14   1.5e-11     598     806 ..      77     286 ..      55     304 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.1e-14
    TIGR02917 598 pdspellellgraqlaakdlkkavesfkkllel..qpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfeleGdlalrq..kdykaAiqaykkalkr.apssqtvikLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkk.apdnavv 806
                  p + ++++ll+r +    d++ +v +++++l++  + +s + +l++  +y      + Al+s++ + ++++       l +q+l++ +r++ A k +k ++++ + a l +   G+l++++  ++y++A+  y++++ +  p++  +   a+a l  g  +eA++ l +  ++ p+d  ++++l   y    + +  ++ Y++ +k+ +p+++ v
  MMETSP1174-20130828|38931_1  77 PIALQAIKLLARYLSFSNDSEIIVGTLESWLSEahAANSTTVQLVASTIYMHEGRIKDALRSIRHSTTMEQL-----ALNTQILIKMQRVDLAAKQVKLMQQADEDATLTQLATGWLHMASggNKYQEAAYVYEELIDKfGPTAMLLNGVAAANLHMGLFEEAERFLLQAITQGPNDPDTLVNLIACYQHMCKPQDLIQRYTNQLKSsSPNHPYV 286
                  556799************************976225677788888888999999999999999999887765.....7889999************************************86679************762689999999*****************************************99*********87666515666544 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.1e-06    0.0097     101     196 ..     196     291 ..     193     307 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.1e-06
    TIGR03939 101 qwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelve 196
                  ++++A+ +y++l+ +    + ll G+a + + +g  eeA   l ++  + p+d ++l +l+  +++  +++d +++++++l+ +  n+ ++k+l +
  MMETSP1174-20130828|38931_1 196 KYQEAAYVYEELIDKFGPTAMLLNGVAAANLHMGLFEEAERFLLQAITQGPNDPDTLVNLIACYQHMCKPQDLIQRYTNQLKSSSPNHPYVKALAT 291
                  79*******************************************************************************988777666666554 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.028        39      66     193 ..     117     140 ..     101     176 .. 0.52
   2 ?    0.7   0.2     0.052        71     142     180 ..     152     190 ..     123     225 .. 0.50
   3 ?    9.2   0.0   0.00013      0.18     143     202 ..     223     279 ..     196     307 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.028
    TIGR02521  66 danlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                   ++l+                                                                                                           +++++g++++A   + 
  MMETSP1174-20130828|38931_1 117 TVQLVAST--------------------------------------------------------------------------------------------------------IYMHEGRIKDALRSIR 140
                  33333333........................................................................................................3444444444443332 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.052
    TIGR02521 142 glcalkagdtekaekyltralkidpkrpesllelaelkl 180
                    ++ k ++++ a+k+ +   ++d++   + l+   l++
  MMETSP1174-20130828|38931_1 152 TQILIKMQRVDLAAKQVKLMQQADEDATLTQLATGWLHM 190
                  333444444444444444444444444444444444444 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00013
    TIGR02521 143 lcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqt 202
                     l+ g +e+ae  l +a+ + p+ p++l +l       +++ + ++l++ry + ++ +
  MMETSP1174-20130828|38931_1 223 AANLHMGLFEEAERFLLQAITQGPNDPDTLVNLIAC---YQHMCKPQDLIQRYTNQLKSS 279
                  455677778888888888888888888888777744...467777777777777766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 767.03
//
Query:       MMETSP1174-20130828|38963_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-41  138.5   0.0    8.2e-41  137.7   0.0    1.2  1  TIGR01090 apt: adenine phosphoribosyltransferase
    2.3e-09   34.4   0.0    3.7e-09   33.8   0.0    1.2  1  TIGR01743 purR_Bsub: pur operon repressor PurR
    2.6e-09   34.9   0.0    4.5e-09   34.2   0.0    1.3  1  TIGR00336 pyrE: orotate phosphoribosyltransferase
      2e-07   28.6   1.0    1.3e-06   25.9   0.7    2.1  1  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
    2.9e-06   24.3   0.0    9.5e-06   22.5   0.0    1.8  2  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    0.00021   18.8   0.0     0.0005   17.6   0.0    1.6  2  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
  ------ inclusion threshold ------
      0.032   11.8   0.0      0.056   11.0   0.0    1.3  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
      0.038   11.7   0.1      0.059   11.1   0.1    1.2  1  TIGR00201 comF: comF family protein


Domain annotation for each model (and alignments):
>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   1.6e-43   8.2e-41       7     154 ..     335     484 ..     330     493 .. 0.95

  Alignments for each domain:
  == domain 1    score: 137.7 bits;  conditional E-value: 1.6e-43
    TIGR01090   7 kipdfPkkGi.lFrDitpllenaelfrllidqlverlkeakidlvvgleaRGFifgaalalklgvgfvpvRkkgkLpaetvsasYdlEYgkd.kleihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgr 154
                   ip fP kGi  F+Di   l+++++f+++id ++er++  +id + gl+aRGF++g+++al+l+ +f ++Rk gk+p+ ++s+ Y++EYgk   l i + a+++g+rvl++DDl+AtgGt++A +e +k  g+ vve+a ++el+ l+ +
  MMETSP1174-20130828|38963_1 335 VIPYFPFKGIdRFYDIGGFLSKPAIFQKIIDIFAERYSCLEIDSIGGLDARGFVLGPSIALALKKPFFMLRKMGKMPNCVFSKPYQVEYGKRdGLGIPRGAVERGHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIVELTFLQEQ 484
                  5899******66******************************************************************************9659****************************************************9973 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   7.2e-12   3.7e-09     104     239 ..     351     484 ..     345     498 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 7.2e-12
    TIGR01743 104 tdllskPsilskiakilasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslkkGskvllvddflkaGGtvkGlielleefdaelvGigvlidneeeeek 239
                    +lskP+i +ki  i+a+ +   eid +  ++++G  l   +a  l+ ++ + rk  k+ +  + s  y     ++ + + + + ++++G +vll+dd++ +GGt+   ie ++     +v  + +++    +e+
  MMETSP1174-20130828|38963_1 351 GGFLSKPAIFQKIIDIFAERYSCLEIDSIGGLDARGFVLGPSIALALKKPFFMLRKMGKMPNCVF-SKPYQV-EYGKRDGLGIPRGAVERGHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIVELTFLQEQ 484
                  56799*******************************************************98765.555544.345668999**************************9999999988888888888876655554 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   8.7e-12   4.5e-09      25     146 ..     347     477 ..     343     504 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 8.7e-12
    TIGR00336  25 yvdlklantgkelanliaeliaalvkdelefdviaGpalkgiPiaaavsvklakpeg......diqllivRke.aKdhGeggki...vGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvld 146
                  + d++ + +++++ + i  + a+  +  le+d i G+   g  ++ +++++l+kp        +++ +++ k  + ++G+ + +    G++++g++v++++D+++tG+ +   +e ++  g++v+++  +++
  MMETSP1174-20130828|38963_1 347 FYDIGGFLSKPAIFQKIIDIFAERYSC-LEIDSIGGLDARGFVLGPSIALALKKPFFmlrkmgKMPNCVFSKPyQVEYGKRDGLgipRGAVERGHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIVE 477
                  889999***********9999999885.*************************995456667677777776651669**986543338*************************************9887775 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.7   2.6e-09   1.3e-06     101     144 ..     435     478 ..     344     503 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2.6e-09
    TIGR01367 101 evkpGekvvvveDvvttGgsakeaikiieelGgqvvglaaiidr 144
                  +v++G++v++++D+v+tGg++   i+ ++  Gg+vv  a+i++ 
  MMETSP1174-20130828|38963_1 435 AVERGHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIVEL 478
                  699**************************************985 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.33   1.7e+02      79      97 ..     328     346 ..     320     370 .. 0.78
   2 !   22.5   0.0   1.9e-08   9.5e-06     210     275 ..     439     510 ..     383     520 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.33
    TIGR01251  79 saksvtaviPyygYaRqdk 97 
                  +a ++  viPy+++   d+
  MMETSP1174-20130828|38963_1 328 EAVEIAQVIPYFPFKGIDR 346
                  5778999*****9866665 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.9e-08
    TIGR01251 210 gkdvvivDDiisTggTlvkaaelLkekGAkkvivaat..hgvfsgdAlerlaeagveeviv....tntilve 275
                  g  v+++DD+++TggTl +++e +k +G   v +a++  + +++++ l  +++ g+++v v    ++++l++
  MMETSP1174-20130828|38963_1 439 GHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIveLTFLQEQRLRFFESLGISDVPVwaliSDAVLQT 510
                  899*************************99997776523677888888777888898885422226777664 PP

>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.6   1.3e+03      65      90 ..       7      32 ..       5      56 .. 0.64
   2 !   17.6   0.0   9.7e-07    0.0005      32     160 ..     357     482 ..     345     503 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.6
    TIGR01744 65 aimtalkldvPvvfakkkkpltltdq 90
                 a+m    ++   vf+k +  +  t++
  MMETSP1174-20130828|38963_1  7 AMMDDTAMNTAFVFIKPHAVTESTKN 32
                 67788888888888876554433333 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 9.7e-07
    TIGR01744  32 aklmrevgeefarrfadkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglvdivkqagakivGlGivieksfqn 160
                  +++ +++ + fa+r+    i  i  ++a G      +al l+ P    +k     + + ++ ++ +    +k   + + +  +    rvl+idd++a+G+++ + ++ vk +g  +v   +++e +f +
  MMETSP1174-20130828|38963_1 357 PAIFQKIIDIFAERYSCLEIDSIGGLDARGFVLGPSIALALKKPFFMLRKMG--KMPNCVF-SKPYQVEYGKRDGLGIPRGAVERGHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIVELTFLQ 482
                  7788999999999999999999999999998766667888888988887754..4666444.556666777778899999999999**************************************99954 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011     0.056      85     122 ..     439     476 ..     433     488 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
    TIGR01203  85 dkdvLlveDivdtgltlkellellkarkpkslkivtll 122
                  ++ vLl++D+v+tg tl+  +e++k+ +   ++ + ++
  MMETSP1174-20130828|38963_1 439 GHRVLLIDDLVATGGTLSAGIECVKMCGGIVVECACIV 476
                  889***************99999998777666666555 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011     0.059     152     183 ..     439     470 ..     433     477 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
    TIGR00201 152 grkivlvDDvvttGatlaeiaklllklgaaev 183
                  g+++ l+DD+v tG tl    +++   g   v
  MMETSP1174-20130828|38963_1 439 GHRVLLIDDLVATGGTLSAGIECVKMCGGIVV 470
                  789**************998888877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.43
# Mc/sec: 1611.49
//
Query:       MMETSP1174-20130828|39018_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 945.21
//
Query:       MMETSP1174-20130828|39067_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 513.29
//
Query:       MMETSP1174-20130828|39068_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1539.87
//
Query:       MMETSP1174-20130828|39081_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1174-20130828|39103_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-13   46.9   0.0    2.6e-13   46.6   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.7e-09   33.8   0.0    7.1e-09   33.2   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.2e-16   2.6e-13       6     236 ..     168     387 ..     163     393 .. 0.90

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.2e-16
    TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaas 236
                   a+k+l++ + ++ +++ R + e  + +  +  +    l      ++ l+ v +y +G  l   L      p        +  + al   h++G+++RD+kP+n+++ a+    h ++ DFG++       d   +    +  + G+P+Y aPe L      ++ D +  G+++ e LtG +    +  +  l+++L   ++ +P  + + + + v+R+ l +d+ +R  s
  MMETSP1174-20130828|39103_1 168 LAMKVLKKSKLKRPKQIERTKTERRVLEVARGNKFTMSLHYAFQTPEKLYVVLDYCQGGELFFHLSRFRKFPEPVACYYTAELVCALGFLHEHGIIYRDMKPENVLLDAQ---GHVQLGDFGLAK------DNIWHPSYGARSICGTPEYMAPEVLDKVGHGSAVDWWGLGMLLYEMLTGLPPWYTKDRQ-KLFQRLRFAPLHIPVNMSS-KCASVVRSLLIRDPNERLGS 387
                  699******99*****************9999999999999999999************************999999999**************************9665...58899****963......4444555667889*************************************988877665.58999*********99876.6799**********999655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.5e-12   7.1e-09      17     138 ..     163     290 ..     147     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.5e-12
    TIGR03724  17 glkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvd.peekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  + ka++  +v    ++++l +  + eRt++E r+l+ a+ +  +  + y ++ pe+  +v++y +g +l   l++ ++        ++ e+  ++g lH++gi++ D+ ++N+++  ++++ l DfGL+k 
  MMETSP1174-20130828|39103_1 163 DNKAILAMKVL---KKSKLKRPKQIERTKTERRVLEVARGNKFTMSLHYAFQtPEKLYVVLDYCQGGELFFHLSRFRKfpepvacYYTAELVCALGFLHEHGIIYRDMKPENVLLdAQGHVQLGDFGLAKD 290
                  55555544444...45788888899********************99999872566789*********99999887778889877788888889999******************45789999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 1729.40
//
Query:       MMETSP1174-20130828|39108_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-18   64.3   0.1    2.9e-18   64.1   0.1    1.1  1  TIGR01351 adk: adenylate kinases
    3.1e-15   54.2   0.3    8.7e-15   52.7   0.0    1.7  2  TIGR01360 aden_kin_iso1: adenylate kinase
    2.7e-13   48.1   0.1    3.2e-13   47.8   0.0    1.1  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    7.7e-05   20.6   0.1    8.5e-05   20.5   0.0    1.0  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00022   18.8   0.0    0.00026   18.6   0.0    1.1  1  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
      0.016   12.9   0.1      0.019   12.6   0.0    1.1  1  TIGR00152 TIGR00152: dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   4.2e-21   2.9e-18       1      48 [.      32      79 ..      32      80 .] 0.97

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 4.2e-21
    TIGR01351  1 rlvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkka 48
                 ++++ G+P+sGKGTq++ ++ek+g+vh+stGd+lRa+v+++te+gk+a
  MMETSP1174-20130828|39108_1 32 KIIIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRAAVEEGTEVGKEA 79
                 589******************************************997 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.26   1.8e+02     176     187 ..       2      13 ..       1      14 [. 0.87
   2 !   52.7   0.0   1.3e-17   8.7e-15       2      51 ..      29      78 ..      28      80 .] 0.94

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.26
    TIGR01360 176 dvflevvaaldk 187
                   vfl+++aald+
  MMETSP1174-20130828|39108_1   2 TVFLDLCAALDS 13 
                  79*********8 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 1.3e-17
    TIGR01360  2 kvkiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkk 51
                 kv+ i i G p sGkGtqce i ek+G  hls+Gd+lr+ v+ g+e gk+
  MMETSP1174-20130828|39108_1 29 KVPKIIIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRAAVEEGTEVGKE 78
                 678899**************************************999985 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   4.7e-16   3.2e-13       3      46 ..      34      76 ..      32      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 4.7e-16
    TIGR01359  3 fvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseeg 46
                  + G+P sGkGtqC+ i e+f+ vhls+Gd+lr++++ eg e g
  MMETSP1174-20130828|39108_1 34 IIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRAAVE-EGTEVG 76
                 578*********************************9.888876 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.2e-07   8.5e-05       2      45 ..      32      75 ..      31      80 .] 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-07
    TIGR02173  2 iivisGpPGsGkttvakilaeklslklisaGkirelaekkgldl 45
                 +i+i+G P sGk t  + + ek+++ ++s+G++   a ++g ++
  MMETSP1174-20130828|39108_1 32 KIIIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRAAVEEGTEV 75
                 599*****************************999999999877 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.8e-07   0.00026       3      39 ..      31      67 ..      29      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.8e-07
    TIGR00017  3 liiaiDGPsaaGKstvakalaeklgykyldsGalYRv 39
                 + i i G  a+GK+t +  + ek g  +l++G + R+
  MMETSP1174-20130828|39108_1 31 PKIIIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRA 67
                 67999******************************98 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05     0.019       3      43 ..      34      74 ..      32      78 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.8e-05
    TIGR00152  3 gltGgigsGKstvakilkdkyklpvidADkiarqvvekgkp 43
                  + G ++sGK t  +++k+k+++  +    + r +ve+g +
  MMETSP1174-20130828|39108_1 34 IIAGAPASGKGTQCELIKEKFGVVHLSTGDMLRAAVEEGTE 74
                 588************************99999****99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|39138_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 439.96
//
Query:       MMETSP1174-20130828|39151_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1124.35
//
Query:       MMETSP1174-20130828|39188_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1174-20130828|39238_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1174-20130828|39275_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 788.87
//
Query:       MMETSP1174-20130828|39286_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1174-20130828|39287_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 596.23
//
Query:       MMETSP1174-20130828|39289_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1174-20130828|39334_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.067   10.8   3.1       0.12   10.1   0.1    2.7  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.042   1.7e+02      10      15 ..      15      20 ..      13      20 .. 0.85
   2 ?   10.1   0.1   2.8e-05      0.12       4      14 ..      31      41 ..      30      42 .. 0.92
   3 ?   -2.5   0.0      0.24   9.8e+02      10      14 ..      46      49 ..      43      50 .. 0.55

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.042
    TIGR02167 10 sLDlSn 15
                 +LDlS+
  MMETSP1174-20130828|39334_1 15 NLDLSS 20
                 599997 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2.8e-05
    TIGR02167  4 gCssLtsLDlS 14
                 +CssL +LDlS
  MMETSP1174-20130828|39334_1 31 NCSSLHALDLS 41
                 9*********9 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.24
    TIGR02167 10 sLDlS 14
                 + D+S
  MMETSP1174-20130828|39334_1 46 T-DVS 49
                 3.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1174-20130828|39386_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-16   56.5   0.0    1.4e-15   55.6   0.0    1.3  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    3.7e-15   53.7   0.0    3.9e-14   50.3   0.0    2.0  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.6e-11   42.0   0.0      2e-10   38.4   0.0    2.0  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    1.2e-05   22.5   0.0    1.9e-05   21.9   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    5.4e-05   20.5   0.0    7.9e-05   20.0   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00025   17.5   0.0    0.00034   17.1   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.7   1.8e+03     133     145 ..      91     103 ..      88     127 .. 0.72
   2 !   55.6   0.0     2e-18   1.4e-15      21     177 ..     137     300 ..     134     304 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.7
    TIGR02072 133 stfgketlkElrq 145
                  s ++++tl+El q
  MMETSP1174-20130828|39386_1  91 SGLVPKTLQELVQ 103
                  5566677777655 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 2e-18
    TIGR02072  21 kkLlellkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqvea.hglrflsleelkallkke.fellkle 177
                  ++L+e+++  r ++++ +v d+ cG+G++tr + ++ +  ++i  D+se+ml   +++ +       + +  di +lp++++++D i + +al+   +l++ l+e++rvlkp+G   f+t  k+  + + q  ++ +   + rf + +el++ll ++ f++++++
  MMETSP1174-20130828|39386_1 137 DQLMEFFDPLRgATQDCTVVDMSCGSGLMTRRIVRSGNFGRVIGGDFSETMLLETRRRFEeeslvVPELLRCDIGQLPMQTETVDGIHAGAALHCWPKLEQGLDEVYRVLKPDGGRFFATTFKKGAYGVPQQLNS-QGgASFRFFEETELEQLLRDAgFSDVSVT 300
                  57999999988989999***********************************8888888788888778999********************************************99999999999999999994.335999**************999999876 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   5.7e-17   3.9e-14      39     138 ..     151     251 ..     141     271 .. 0.89
   2 ?    1.0   0.0     0.069        47     187     208 ..     278     299 ..     275     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 5.7e-17
    TIGR01934  39 keekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggr 138
                  ++ +v+D+ +G+G ++ ++ ++ +  +v+g D+se+mL   +++++e++    e +  d  +Lp++ +++d +  +  l    + e++L+e++RVlkp+g 
  MMETSP1174-20130828|39386_1 151 QDCTVVDMSCGSGLMTRRIVRSGNfGRVIGGDFSETMLLETRRRFEEESLVVPELLRCDIGQLPMQTETVDGIHAGAALHCWPKLEQGLDEVYRVLKPDGG 251
                  56789****************************************999767789*******************************************9863 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.069
    TIGR01934 187 kfpskeelaallkeagfeevry 208
                  +f ++ el++ll++agf+ v++
  MMETSP1174-20130828|39386_1 278 RFFEETELEQLLRDAGFSDVSV 299
                  688999***********99854 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0     3e-13     2e-10      48     146 ..     154     251 ..     146     270 .. 0.91
   2 ?    1.6   0.0     0.054        37     195     217 ..     278     300 ..     251     309 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 3e-13
    TIGR02752  48 kaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggk 146
                  +++d+ cg++  +  + +  g+ g+v+g dfse ml  ++++ ++++l   el+  +  +lp++ ++ d +  g  l   p   q l e++rv+kp g 
  MMETSP1174-20130828|39386_1 154 TVVDMSCGSGLMTRRIVR-SGNFGRVIGGDFSETMLLETRRRFEEESLVVPELLRCDIGQLPMQTETVDGIHAGAALHCWPKLEQGLDEVYRVLKPDGG 251
                  6899*****999988876.59***************************************************************************764 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.054
    TIGR02752 195 efpgkdelaelfkeaglkdvkvk 217
                   f  + el++l+++ag++dv v 
  MMETSP1174-20130828|39386_1 278 RFFEETELEQLLRDAGFSDVSVT 300
                  5667889*************875 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.8e-08   1.9e-05      48     154 ..     150     257 ..     125     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.8e-08
    TIGR01983  48 leglkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflsti 154
                   ++ +v+D+ cG+Gl++  + r+g    v+g D se+++   +   +++ l   e   +++ +l  + +e+ D + a   l   ++le+ l e+ ++lkp+g  f++t 
  MMETSP1174-20130828|39386_1 150 TQDCTVVDMSCGSGLMTRRIVRSGNFgrVIGGDFSETMLLETRRRFEEESLVVPELLRCDIGQLPMQ-TETVDGIHAGAALHCWPKLEQGLDEVYRVLKPDGGRFFATT 257
                  57899******************98778*********999888888888887789999******988.567******************************88888875 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   7.9e-05      55     100 ..     152     199 ..     133     232 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.1e-07
    TIGR02021  55 GkkvlDAGCGtGllsielAkrGa..ivkavDiseklvelarkraeked 100
                    +v+D  CG+Gl++ ++ ++G   +v + D se ++ ++r+r e+e 
  MMETSP1174-20130828|39386_1 152 DCTVVDMSCGSGLMTRRIVRSGNfgRVIGGDFSETMLLETRRRFEEES 199
                  468*******************7558****************998875 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.9e-07   0.00034     282     331 ..     151     200 ..     132     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.9e-07
    TIGR04074 282 garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrl 331
                  +  +v+D+ cG+g + ++++++ +f +++g d s + L +++rr++ ++l
  MMETSP1174-20130828|39386_1 151 QDCTVVDMSCGSGLMTRRIVRSGNFGRVIGGDFSETMLLETRRRFEEESL 200
                  4568****************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 983.63
//
Query:       MMETSP1174-20130828|39411_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 820.22
//
Query:       MMETSP1174-20130828|39430_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 787.22
//
Query:       MMETSP1174-20130828|39534_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|39537_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 498.63
//
Query:       MMETSP1174-20130828|39542_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 470.21
//
Query:       MMETSP1174-20130828|39573_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1174-20130828|39587_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 139.75
//
Query:       MMETSP1174-20130828|39597_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 443.96
//
Query:       MMETSP1174-20130828|39604_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       637  (0.15529); expected 82.0 (0.02)
Passed bias filter:                      374  (0.091175); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 230.04
//
Query:       MMETSP1174-20130828|39614_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 673.60
//
Query:       MMETSP1174-20130828|39668_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.42
# Mc/sec: 169.70
//
Query:       MMETSP1174-20130828|39688_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-280  929.0   5.8   1.9e-280  928.8   4.0    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   1.3e-159  530.1   4.3   1.5e-159  530.0   3.0    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   1.4e-136  453.9   5.4   1.8e-136  453.6   3.7    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   4.5e-114  379.6   5.0   5.6e-114  379.3   3.5    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   1.4e-109  364.6   2.9   1.7e-109  364.3   2.0    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   1.2e-107  358.7   4.6   1.6e-107  358.3   3.2    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
      1e-95  319.1   2.1    1.2e-95  318.7   1.5    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    4.8e-92  307.0   5.0    5.8e-92  306.8   3.5    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    8.7e-92  306.2   5.0      1e-91  305.9   3.5    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    3.1e-21   73.3   8.1      5e-18   62.7   0.9    2.3  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  928.8   4.0  4.7e-283  1.9e-280       2     530 ..      15     543 ..      14     545 .. 1.00

  Alignments for each domain:
  == domain 1    score: 928.8 bits;  conditional E-value: 4.7e-283
    TIGR02343   2 lafdelGrpfiiikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  ++fde+Grpf+i+++q+ ++r+kGl+a+ksni+aa+++++ilrtslGpkG+dk+l+++dg++t++ndGatil+km++++++a+llvels+sqd+eiGdGttgvvvla++lleqaeklld+G+hp++i++Gf++a+k a+e l+ei++ +++d++n ++l+++a+t+l+skiv+ +++++a+iavdavlavadler+dv+fd+ik+egk Gg+le+t+likGi+idkd+shpqm+k v+dak+ iltcpfeppkpktkhkldi+s e y+kl  +e+++f+em++++k+sGanlvicqwGfddeanhlllq+dlpavrwvgG+eleliaiatgGrivprf+els +klGka+ vre  fGt k+r+lvie++++ kavt+lvrGgn li+eeakrslhda+cvvrnlik+++ivyGGG++eiacs a+++ ad ++g +qya+rafa+al++ip+alaensGl pie+ls+vk++q+ e np+lG+dc++ Gtndmk+++v+etligk+qq+llatq+vkmilkiddvi+
  MMETSP1174-20130828|39688_1  15 MVFDEYGRPFVILREQQAQSRIKGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDNENLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADLERHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSHPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGTLKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIM 543
                  789********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.0   3.0  3.5e-162  1.5e-159       1     519 [.      23     543 ..      23     545 .. 0.97

  Alignments for each domain:
  == domain 1    score: 530.0 bits;  conditional E-value: 3.5e-162
    TIGR02339   1 pvlilkegt..qrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedk..ellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvg..edklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  p +il+e++  +r kg da+ksni aa+ ++++++++lGP+G+DkmLv++ G+vti nDGatil++m++eh  a+llve +++qd+e+gDGtt +vvlaG+Lle+ae+Ll++++hP  i +G+ +a +ka e+++ei++ ++ +++  + l ++a t+l+sk v +++++k+a+++v+av +v++ +   +++v++d ik+e k Gg++e+tel++Giv+Dk+  h++mPk v++ak+ +l  p+e  k++++ kl+its +   k   qe+++++emv++ +d+Gan+vicq g Dd a+h+l ++ + avr v   ++e +a atG++iv  ++e+++++LG+a+ v+e  +g  +++++ +e+++n kavt+l+rGg+  +v+e+ R+l+Da+ vv+++++++++v GgG++e++ ++ +   a+++ G +q a++afadal+ ip++laen+Gl pi+ l  ++++  +egn + g+d +    +dm +++v+e+l  k+q +  at +  +il+iDdvi 
  MMETSP1174-20130828|39688_1  23 PFVILREQQaqSRIKGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDNEnlDPLMNTARTTLSSKIV-NVHREKMAQIAVDAVLAVADLE---RHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSHPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIM 543
                  567888875226889***************************************************************************************************************************9998876512669*************.8**************9999998...778***************************************************************************************************************************************************************99855699*******************************************************************************************************************************************************************95 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.6   3.7  4.3e-139  1.8e-136       6     515 ..      37     543 ..      32     545 .. 0.96

  Alignments for each domain:
  == domain 1    score: 453.6 bits;  conditional E-value: 4.3e-139
    TIGR02342   6 kpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls..drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevks..ddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrh.aqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  k  d ++sni+aa+++++++rtslGpkGmdk++ +  G+v+i+ndGatil+++ev h +a+llvels++qd e GdGtt vvvlaG+ll+ aekll++g+hp+ is++f +a+++a++ l+e+s  v+ +  + + l+++a+t+lssk+v  + + +a +avdavl v d  + ++v++ +ik+  k Gg +++teli+G+v+++ +s+    p+ +++ak++++   + +pk++++ ++ ++  ++ d++  +e++y  ++v++ k +gan+++ q        +d a h+l + ++  v+ +   e+e+i+ + G + v    +l++dklGka  v ev     + +++ i  ++n  k+v+vlvrG n l+++ea+rslhda+cv+r l+k+  ++ GGG+ ei  + ++s++a+++ G+++y +rafadal+ ip++laen+Gl+pi+ ++ +++r  ++G+ + Gi+ +  g++d+++++v   l+ ++  + la+++v++ilkidd+++
  MMETSP1174-20130828|39688_1  37 KGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDneNLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADL-ERHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSH-PQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWG-----FDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFgtLKERMLVIEDCSN-MKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQvTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIM 543
                  6678899*********************************************************************************************************************988877225578**********************************6.7789*******************************97.778999**********************************************************99975.....689999***************************************************98435678888888876.699***********************************************************************************************9987368*************************************************97 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.3   3.5  1.4e-116  5.6e-114       6     520 ..      30     542 ..      23     546 .. 0.95

  Alignments for each domain:
  == domain 1    score: 379.3 bits;  conditional E-value: 1.4e-116
    TIGR02344   6 nqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvede..akllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiG..deyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                  +q + r +G  aq sni aa+++++i+rt+lGpk m kml++p G + ++ndG +il++++v+h  a+ l+els++qd+e+GdGtt v++laG ll++ae++l++ +hp+ i +++ +a ++a+++l+e+s  v+ ++e  + l++  ++++++k+v+ + ++++++a+dav +v+  er+    + d    +k+e  pGG++e++ ++kG++++kd  hp+m + +++ ++ +l cp+e  k +++ +++i++ e +++l+ +e+ + +++ ++  ++ ++lvi + G  d a+h ll+a++ a+r v   + + ia ++G +iv r  el  + +G+   + ev  +G  +e +  +++c + ka t+l+rG+   +++e +r l+da+ v+rn++ + ++v+GGG++e+a s+++++ a ++ g +q+  +a adal+ ip  l++n+G ++i +l++++++   e++ +lGid +     dmk++ ++e+l  k+q +  a +   ++l+idd++
  MMETSP1174-20130828|39688_1  30 QQAQSRIKGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDNEnlDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADLERHDV--NFD---MIKMEGKPGGRLEETELIKGIVIDKDFSHPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVA-FGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVI 542
                  5667899****************************************************************************************************************************99988776225799999**************************998774444..444...589************************************************************************************************************************************************987777776.4423689999**************************************************************************************************************************99***********************************97 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.3   2.0  4.2e-112  1.7e-109       4     520 ..      24     544 ..      22     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 364.3 bits;  conditional E-value: 4.2e-112
    TIGR02345   4 ivllkegtdts..qGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavls...ldkddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiG..serynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                  +v+l+e   +s  +G     sni a+++i++il+t lGP+Gmdk++v+ +   ++sndGatil+++++ h +a+llv++++sqd+e+GdGtt vvvlag+ll++a +l++ glhp  i +++ ea k aie l+ei+  ++  ++e+ + l + a+t+lssk+++ ++e ++++ vdavl    l+++d++ ++i +    GG le++ l+kG+  +k fs   + q Pk +++ k+++l   +e    k+   + +++ e y ++   e +  +e ++++++sGan+v+ +    d a   + + d+ +   v   +l+ ++ atG++i+   s+l+ d+lGk +   e   G  +er  + +++ + ka+t+++rGg   ++eea+rslhda+++vr  +k+++iv GGG+ e+  s+ + + + +++g +q  ++a+a+al+ iP  laen G+  ie l  ++++   +g+   G+d ++  + d+ ++ v+e l+ k+  l  at+  ++il++d+ i+ 
  MMETSP1174-20130828|39688_1  24 FVILREQQAQSriKGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGqVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVE-FDNENLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAvadLERHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFS---HPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIMH 544
                  45555555554236888889************************999987769***********************************************************************************97776.7778899****************************98761115667777789999999********************9...68***********************************************************************************9999*****************************************55599******************************************************************************************************************************************************************9986 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.3   3.2  3.9e-110  1.6e-107       7     528 ..      35     543 ..      30     546 .. 0.93

  Alignments for each domain:
  == domain 1    score: 358.3 bits;  conditional E-value: 3.9e-110
    TIGR02340   7 rksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikekl.avsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeria..ddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlik 528
                  r +G d++k n+la+ +++ni++tslGP G+dkmlv+  G+vti ndGatil+k+eveh  a++lvel+q qd+e+GdGtt vv+la +ll++a++l++r +hP  + +G+  a+k+a++ ++e   +v+ ++   + l+n a+t+lsski++ + + +++++vdavlav   +++ +++   + +++  ++G+  +e+ l+kG +++   +  qmpk v++ak+ +l   ++  k k   ++ ++  e  +k+  +e+   +e +++  ++Gan+v+   G dd a   l++a++ avr v   +l  ia atG+++v  +++l+ +      +lG+a  v e+ ++   + +++i++ ++ k++++++rG n+ +++e +rslhda+cvv+  +  +++v GgG+ e+a s  + +la t+   +q a+ +fa+al  iP  la n++        +l a+++++ ++     + +lG+d +    +d ++  v+e  + k ++l  at+    il+idd+i 
  MMETSP1174-20130828|39688_1  35 RIKGLDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISdVVEFDNENLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADLERH-DVN--FDMIKMEGKPGGRLEETELIKGIVIDKDFSHPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPD------KLGKAGCVREVAFGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPI---EQLSAVKSRQVTE----GNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIM 543
                  77899******************************************************************************************************************9988754145667777799********************************988844.444..4678888999*************************************999999999999999*******************************************************************************98766......5666666666665522578899999*******************************************************************************************9875...5777777776655....4789*********************************************95 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   1.5     3e-98   1.2e-95      14     519 ..      37     544 ..      26     547 .. 0.94

  Alignments for each domain:
  == domain 1    score: 318.7 bits;  conditional E-value: 3e-98
    TIGR02346  14 sgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaeg.sv.krvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigs..kkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah.kkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                  +gl+ a   ni a + +s+i+rtslGP+gm+k+++n   ++ ++nD atil+++ev+h +a+llv++s+ q++e+GDgt  v+vlag lLe+ae+l+  Gl+p+ i +G++ a+kka+e+L+e++ +   d e+ + l+++ +++lssk ++   + +a++  +a++ v   + ++ n d i++    Gg l++ e++kG+v++++    ++ k v+dak+ +++cp++  +  tk    + + e        e +   +++++ +dsg+++++ +    d a h + + ++  ++     el  ++ + g   ++r+s  sp++lG+   v+    g+  +++ vi++  +  k  t+++rG  + ++++  r+++D + vv++l+k+++++ G+g++ei  ++++ ++a+++ g +qya++ fa a + iP +laen+Gl + e ls++ + +  +gn +lgid   + ++++d+k+++++++l +k+  + lat+ +  +Lk+D +im 
  MMETSP1174-20130828|39688_1  37 KGLD-AQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDNENLDPLMNTARTTLSSKIVNVhREKMAQIAVDAVLAVADLERHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSHpQMpKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGTlkERMLVIEDCSN-MKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRQvTEGNPHLGIDC--KGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIMH 544
                  5554.44579*******************************************************************************************************************9999999*****************98754899************************************************9654144267899************************99999999999***************************************************************************999988887752256777776665.8999**********************************************************************************************9988577888888765..566779***********************************95 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   3.5   1.4e-94   5.8e-92       3     512 ..      27     542 ..      25     546 .. 0.92

  Alignments for each domain:
  == domain 1    score: 306.8 bits;  conditional E-value: 1.4e-94
    TIGR02341   3 lkdsaeeer..aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa.vdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgstnleaiqiikklggklddsyldegfllekkigvnq.pkrienakiliantaldtdkvkvfgsrvrvdstakla..elekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeilig..edkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraa.haegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdnii 512
                  l+++  + r  + +a+ s ++ a ++ ++++++lgpkgmdk+l+  +++++++++ndgatil+++ ++   a++lv++s+ qd+e+gdgtt v+vla  ll +aekl+++ +hp  i +g+ +a k a+e+l++ + v + ++  +  + l++ arttlsski+  +++++a++avdavl +    +   n++ i++  k gg+l+++ l +g++++k +   q pk++++ak+ i   +++  k k   ++ ++d t++ a  +l + e+  ++e v++ +  + n  i +    +  + l+ +a++ a+       +e +a+ tgg iv  f e +  klg+   + e+  g  ++++l +  +   +a t+++rg    i++ea+rslhda++v+ + +k+ ++v+ggg++e+  ++a+++ a+ vag +  a+ afa al  +p  la+n+g+   e ++ +++   +egn   g+d +     d++ + + e++  k++ ++ a++  +++l++d++i
  MMETSP1174-20130828|39688_1  27 LREQQAQSRikGLDAQKSNILAARSISNILRTSLGPKGMDKMLV--NPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISdVVEFDN--ENLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVadleRHDVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSHPQmPKVVNDAKMCILTCPFEPPKPK---TKHKLDITSREAydKLFAQEQSYFREMVQQCKDSGANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRqVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVI 542
                  55555555522668999**************************8..56779*********************************************************************************98652444444..45699******************************97333346789****************************998544********************99...56666666655433899************************99999******************99999***********************************55589******************************************************************************************************999999862689***********9************************************98 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.9   3.5   2.5e-94     1e-91      15     527 ..      39     546 ..      25     548 .] 0.94

  Alignments for each domain:
  == domain 1    score: 305.9 bits;  conditional E-value: 2.5e-94
    TIGR02347  15 daalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki.kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee.idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvig..eekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvklede.adearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGk 527
                   +a k n+ aa++++++l+t lGPkG  kmlv+  G++ +  dG ++l+++++ h  a l+   + +qd+ +GdGtt +v+l+g+ll+qae+l++ glhP  + +G++ a k+a+e l+++      ++ + + l++ art+l  k+ +   +k+++i vdavla+ + e++ +++ m+ +         +t+li+G+v+d  + hP+m++ v+++ + +l   +e  k     ++   s e  +kl ++e+ +  + v++        +++++    +vi q G d  +  ll ++++ a+r +   +le + +a+GG+ +  + +l+p++lG aG v e + g  +e+   ie+++n k+vt+l++g n   ++  k +++d +  v+n i+++ +v G g+ eia+++++ + + +v G ++ ++ afa+al  iP  l+ensG+  +e l +++++ ++e++  +g+d +   + + + + +++++  k+q+l  at + + +l +d+v+  G+
  MMETSP1174-20130828|39688_1  39 LDAQKSNILAARSISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQVARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDvVEFDNENLDPLMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADLERHdVNFDMIKMEGKPGGRLEETELIKGIVIDKDFSHPQMPKVVNDAKMCILTCPFEPPKPKTKHKLDITSREAYDKLFAQEQSYFREMVQQ--------CKDSG--ANLVICQWGFDDEANHLLLQADLPAVRWVGGVELELIAIATGGRIVPRFSELSPDKLGKAGCVREVAFGtlKERMLVIEDCSNMKAVTVLVRGGNTLIVEEAKRSLHDAMCVVRNLIKNNHIVYGGGSSEIACSNAISRLADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRqVTEGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVIMHGQ 546
                  467889******************************************************************************************************************965245566667899*******************************98665449*****98888888899**************************99999999*******************************999986........55553..247899*************************************************************99555999**********************************************************************************************************98615777899******99999**********************************98886 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.9   1.2e-20     5e-18      20     188 ..      51     217 ..      39     223 .. 0.89
   2 !   14.1   0.5   6.5e-06    0.0027     380     520 ..     397     542 ..     369     546 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.2e-20
    TIGR02348  20 kladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdk.eeiaq.vatisanndeeiGeliaeamekvgkdGvitveesksletelevv 188
                  ++++ +++ lGPkg + +l    G+ +i +dG t+ +++e+e+++    a+l+ e ++  ++  GdGtt  +vla +++++  k +  G  p+++ +G ++a++k++e+l++ s  v+ + e++   + t  ++ +++i ++  e m++++ d v++v + +  + + +++
  MMETSP1174-20130828|39688_1  51 SISNILRTSLGPKGMDKMLVNPDGQVTISNDGATILQKMEVEHQV----ARLLVELSQSQDNEIGDGTTGVVVLAGSLLEQAEKLLDRGLHPVRISQGFDEACKKAIETLNEISDVVEFDnENLDPlMNTARTTLSSKIVNVHREKMAQIAVDAVLAVADLERHDVNFDMI 217
                  688999*********************************998876....789999999999*******************************************************9965155554245566677899*********************998888888776 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 6.5e-06
    TIGR02348 380 Gaatetelkekkarvedalnatraavee.GivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek....kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                  G +t   + e k  + da+   r  +++  iv GGG + + +++++++ +++ +  ++  ++    al++    +aen+G  +   + +vk++     + ++G + +    +d+ ++ + +     ++ l  a+ +  ++l  + v+
  MMETSP1174-20130828|39688_1 397 GGNTL-IVEEAKRSLHDAMCVVRNLIKNnHIVYGGGSSEIACSNAISRlADTVAGTNQYALRAFADALDDIPMALAENSGLSPIEQLSAVKSRqvteGNPHLGIDCKGVGTNDMKDQRVFETLIGKQQQLLLATQVVKMILKIDDVI 542
                  44443.36789999**********9975279*****************44555559999**********99999******9886666666554121135689*****9999*****9999999999999999999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 1418.24
//
Query:       MMETSP1174-20130828|39717_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 1416.34
//
Query:       MMETSP1174-20130828|39719_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 269.48
//
Query:       MMETSP1174-20130828|39737_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-09   33.5   0.0    1.2e-08   32.3   0.0    1.5  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.5e-06   25.6   0.0    1.1e-05   22.7   0.0    2.0  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.4e-06   24.2   0.0    6.7e-06   23.6   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    2.1e-05   21.9   0.0    3.4e-05   21.2   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
  ------ inclusion threshold ------
      0.028   12.5   0.0      0.048   11.8   0.0    1.3  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
       0.04   11.6   0.0      0.059   11.0   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.8e-11   1.2e-08      33     148 ..     120     237 ..     113     252 .. 0.90
   2 ?   -3.1   0.0       1.2   8.3e+02     192     212 ..     266     286 ..     261     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 1.8e-11
    TIGR01934  33 kkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLp.fednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpk 148
                   k+++  ++++lD  +G G  a ++++ ++akvt+v l++  ++ +++ ++ +     ve ++a+ +++  f dn fd v          d++ + +e++RVlkpg+++++ e   ++
  MMETSP1174-20130828|39737_1 120 GKLQVPPGAHILDCGCGVGGPARNIHRFTGAKVTAVTLNQFQVDRGNELCRREgVAGMVELKQANFMNMEqFGDNHFDGVFAIESTCHAPDRNGVYSEIFRVLKPGATFACYEWCLTD 237
                  56778899******************************************9999999************88*******997777888999*********************9976555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.2
    TIGR01934 192 eelaallkeagfeevryrslt 212
                  +e +a lk++gfe +++r+++
  MMETSP1174-20130828|39737_1 266 SECTAALKKVGFEILETRDVA 286
                  5678899999**999998865 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.6e-08   1.1e-05      49     148 ..     126     227 ..      95     230 .. 0.89
   2 ?    0.2   0.0      0.12        82     164     182 ..     327     345 ..     318     353 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.6e-08
    TIGR01983  49 eglkvlDvGcGgGllseslar.lgaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggi 148
                   g ++lD GcG G  +  + r +ga+vt++ l + +++  ++  ++++++  +e ++++  ++++  +++fD v a+E   H +d + +  e+ ++lkpg++
  MMETSP1174-20130828|39737_1 126 PGAHILDCGCGVGGPARNIHRfTGAKVTAVTLNQFQVDRGNELCRREGVAgMVELKQANFMNMEQFGDNHFDGVFAIESTCHAPDRNGVYSEIFRVLKPGAT 227
                  3899***************9945888***********************999***********999999******************************986 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.12
    TIGR01983 164 aivlaEyvlkivPkgtHdl 182
                   i+ a +++++vPkgt + 
  MMETSP1174-20130828|39737_1 327 IILSACEMIRLVPKGTAKT 345
                  57788999********775 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.7e-09   6.7e-06      40     151 ..     121     232 ..     100     245 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.7e-09
    TIGR02752  40 rmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdakl.envelvhgnamel.pyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcle 151
                  +++v  g+++ld  cg +  a  + +  g   +v+ + + +  ++ g+e  + + +   vel   n m++  + dn fd v         pd   v  e+ rv+kpg   +c e
  MMETSP1174-20130828|39737_1 121 KLQVPPGAHILDCGCGVGGPARNIHRFTGA--KVTAVTLNQFQVDRGNELCRREGVaGMVELKQANFMNMeQFGDNHFDGVFAIESTCHAPDRNGVYSEIFRVLKPGATFACYE 232
                  678999*******************99997..5777777777888888887766651689********99459********99899999***********************88 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     5e-08   3.4e-05      52     135 ..     124     212 ..     108     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5e-08
    TIGR02021  52 slkGkkvlDAGCGtGllsielAk.rGaivkavDiseklvelarkraekedeaenveFevn...dlesle.gkfDavvalDvlihYpaed 135
                   + G ++lD GCG G  + ++ +  Ga+v+av + +  v+  ++  + e +a+ ve +     ++e+   ++fD v a+++  h p+++
  MMETSP1174-20130828|39737_1 124 VPPGAHILDCGCGVGGPARNIHRfTGAKVTAVTLNQFQVDRGNELCRREGVAGMVELKQAnfmNMEQFGdNHFDGVFAIESTCHAPDRN 212
                  46799**********9999987658*****************************999866122566665689************99865 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     7e-05     0.048      14      93 ..     121     200 ..     116     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7e-05
    TIGR02469  14 kLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnie.ivegdapkaeedsleeadavf 93 
                  kL++ +g+++lD G+G G  + ++ r  +  +v+a+  n+ +++  +e +rr gv  ++ + ++++ ++e+  ++ +d vf
  MMETSP1174-20130828|39737_1 121 KLQVPPGAHILDCGCGVGGPARNIHRFTGA-KVTAVTLNQFQVDRGNELCRREGVAGMVeLKQANFMNMEQFGDNHFDGVF 200
                  899****************99999988887.999**999999999999999986555440444444444444366666665 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.7e-05     0.059      36     136 ..     128     234 ..     116     284 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.7e-05
    TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklp.lekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfg 136
                  a++Ld GcG G   +    rf+ a+++a+ + + +  + ++  +       v+  ++++ +++ + +++fD +++  +   + d + v +e++rvlkpg+ +a+   +
  MMETSP1174-20130828|39737_1 128 AHILDCGCGVG-GPARNIHRFTGAKVTAVTLNQFQVDRGNELCRregvagMVELKQANFMNMEqFGDNHFDGVFAIESTCHAPDRNGVYSEIFRVLKPGATFACYEWC 234
                  78*********.555566778888899999999888888877777888997777777777765256888********9999*******************99986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1213.66
//
Query:       MMETSP1174-20130828|39779_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.44
# Mc/sec: 710.94
//
Query:       MMETSP1174-20130828|39805_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 147.07
//
Query:       MMETSP1174-20130828|39812_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 413.57
//
Query:       MMETSP1174-20130828|39870_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.9  21.7      0.098   10.1   4.5    2.0  2  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
        3.9    5.3   7.1        6.6    4.6   1.1    2.8  2  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.5    0.0021       4.4      50      76 ..       3      29 ..       1      34 [. 0.75
   2 ?   10.1   4.5   4.8e-05     0.098      43      79 ..      32      64 ..      28      67 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0021
    TIGR03789 50 GallGavVgGPvGaiiggitGgligqa 76
                 G ++G++Vg  vG+ +g  +G+++g+ 
  MMETSP1174-20130828|39870_1  3 GSVVGTAVGTDVGTAVGNAVGTVVGTG 29
                 778888888888888888888888764 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 4.8e-05
    TIGR03789 43 aliGlgsGallGavVgGPvGaiiggitGgligqavan 79
                 +++G g Ga+lG  Vg  vG+ +g++ G  +g     
  MMETSP1174-20130828|39870_1 32 TAVGTGLGAVLGNEVGMAVGTAVGTLDGKDVG----R 64
                 35666666666666666666666666655444....4 PP

>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.1    0.0032       6.6      39      58 ..       6      25 ..       2      57 .. 0.72
   2 ?    1.3   1.8     0.034        70      39      47 ..      58      66 ..      33      68 .] 0.71

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0032
    TIGR01149 39 iGkkvGRDiGiLYGlviGll 58
                 +G  vG D+G   G  +G +
  MMETSP1174-20130828|39870_1  6 VGTAVGTDVGTAVGNAVGTV 25
                 56666666666666655544 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.034
    TIGR01149 39 iGkkvGRDi 47
                  Gk vGRD 
  MMETSP1174-20130828|39870_1 58 DGKDVGRDD 66
                 477777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1174-20130828|39887_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-169  561.4   0.9   2.6e-169  561.1   0.6    1.0  1  TIGR01365 serC_2: phosphoserine aminotransferase
    3.2e-25   86.9   0.0    3.9e-25   86.6   0.0    1.0  1  TIGR01366 serC_3: putative phosphoserine aminotransferase
    2.4e-15   54.1   0.0      3e-15   53.8   0.0    1.1  1  TIGR01364 serC_1: phosphoserine transaminase


Domain annotation for each model (and alignments):
>> TIGR01365  serC_2: phosphoserine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  561.1   0.6  1.9e-172  2.6e-169       5     372 ..      29     387 ..      25     389 .. 0.98

  Alignments for each domain:
  == domain 1    score: 561.1 bits;  conditional E-value: 1.9e-172
    TIGR01365   5 pefssgpcakrpgysveelknaalgrshrsklgkeklkeaiektrevlevpadyligivaasdtgavemalwsllgargvdllafesfgkgwvtdvtkqlklkdvrvleaeygklpdlkkvdfkkdvvftwngttsgvrvpngdfipadreglticdatsaafaqdldyekldvvtfswqkvlggegahgvlilspravarlesytpa.wplpkifrltkggklskdifegetintpsmlavedaldalkwaesigglkalvaraddnlavleafvaksswvdflaatkeirsntsvclkvvdpdvaaldedaqadfakelvsalekegvaydigsyrdapaglriwcgatveksdleallewldwafa 372
                  pefssgpc krpg+ ++  k aa grshrsk+gk+kl++ai++tr +levp+dyli iv+asdtga+ema+ws+lg ++vdl  +esfgkgw  d    lkl++v  + a+yg+lpdl++ ++++d+vftwngttsgv vpn+d+i+ dr g+t+ datsa+fa+++d++k+dv t+swqkv+ggegahg+lilsprav+rles+tp   plpkifr+ k gk+   +f+g+tintpsm++ved+ldal wa+s+ggl+ l+ r+++nla ++a v+  +w++fla+ +  rs+tsvcl v          d +a  +ke++  le+e++a+dig+yrdap glriwcgatv++ d+e l+ewl++a++
  MMETSP1174-20130828|39887_1  29 PEFSSGPCKKRPGWNTDVYKTAATGRSHRSKIGKAKLQQAIDETRRLLEVPDDYLIAIVPASDTGAIEMAMWSMLGPKPVDLCHWESFGKGWLGDAQSHLKLDNVTEITAGYGQLPDLSQTNPDHDIVFTWNGTTSGVCVPNADWISPDRTGITFNDATSAVFAMEIDWSKVDVTTYSWQKVMGGEGAHGMLILSPRAVERLESFTPEnRPLPKIFRMVKKGKVDAALFKGSTINTPSMICVEDYLDALAWADSVGGLQGLIGRSQANLAAVSAAVDAHDWLNFLAVDPLNRSSTSVCLTV----------DMEAAKLKEMIAWLENEEIAFDIGAYRDAPDGLRIWCGATVDSADVELLMEWLEFAYN 387
                  9**************************************************************************************************************************************************************************************************************637******************************************************************************************9..........33455699*************************************************8 PP

>> TIGR01366  serC_3: putative phosphoserine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   2.8e-28   3.9e-25       7     358 ..      31     386 ..      27     389 .. 0.90

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 2.8e-28
    TIGR01366   7 fgagpskvrleqlqalvataasllgtshrqaavknlvgkvreglaelfslpdgyevilgnggatafwdaatfgliekkslhlsfge.fsskfakaaklapfldepeivtadpgsape.aqaeegvdvialahnetstgvavavrrpegsde.alvvidatsgagglpvdiketdvyyfapqksfasdgglwlavlspaaleriekiaasgrfvpeflsl..ptavdnsl.knqtyntpavatlllldeqvdwlngnggldfavartkdsssrlyswaeereyatpfvadaakrsq..vvgtidfsddidaavvakilrangivdtepyrklgrnqlrvamfpaidpadvealteavdfvv 358
                  f +gp k r+     + +taa   g shr    k  + +  +  + l+++pd y + +     t   ++a + ++  k   l++ e f   +   a+    ld+ + +ta  g+ p+ +q+++  d i ++ n t++gv v+       d   +   dats    + +d ++ dv  ++ qk +  +g   + +lsp a+er+e  +  +r +p+++ +  +  vd +l k  t ntp++  +    + + w  + ggl++ + r+++   ++ +  ++++       d+ +rs   v  t+d++      ++a +   +   d   yr    + lr+    ++d+adve l e ++f  
  MMETSP1174-20130828|39887_1  31 FSSGPCKKRPGWNTDVYKTAA--TGRSHRSKIGKAKLQQAIDETRRLLEVPDDYLIAIVPASDTGAIEMAMWSMLGPKPVDLCHWEsFGKGWLGDAQSHLKLDNVTEITAGYGQLPDlSQTNPDHD-IVFTWNGTTSGVCVPNADWISPDRtGITFNDATSAVFAMEIDWSKVDVTTYSWQKVMGGEGAHGMLILSPRAVERLESFTPENRPLPKIFRMvkKGKVDAALfKGSTINTPSMICVEDYLDALAWADSVGGLQGLIGRSQANLAAVSAAVDAHDWLNFLAVDPLNRSStsVCLTVDMEAAKLKEMIAWLENEEIAFDIGAYRDA-PDGLRIWCGATVDSADVELLMEWLEFAY 386
                  899******998888888776..5***********99999999*************************************998776377778888888899***************9456666666.5699***********999988888578889**********************************************************99873245799986599***********99999**********************************99999*****9853377899999888888999988888889******96.689*****************99998865 PP

>> TIGR01364  serC_1: phosphoserine transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.2e-18     3e-15      37     306 ..      55     336 ..      43     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 2.2e-18
    TIGR01364  37 sHRskefekvveeaesdlreLlnipdnyevlflqGGattqfaavplnllkekkvadyivtGawskkalkeakkltkevkvvaseeekkyskipdeeelelkedaayvylcanetieGvefkelpevkk...aplvaDlssdilsrkidvskygliyaGaqKniGpaGvt.vvivrkdllerakk......elpsvldYkilae......ndslyntpptfaiyvlglvlkwlkekGGvkklekknqeKakllYeaidesegfyknkvekkaRslmnvvFtlkke..el 306
                  sHRsk  ++ +++a ++ r+Ll++pd+y +  +    t+   +    +l  k  +d     +++k  l +a+   k  ++v++  +  y ++pd ++ + ++d   + ++ n t +Gv + ++   +     + + D  s +++ +id sk ++     qK +G  G   ++i+    +er ++       lp++++   + +      + s +ntp+++ +      l w  + GG++ l  ++q+  + +  a+d+++ +   +v++ +Rs   v+ t++ e  +l
  MMETSP1174-20130828|39887_1  55 SHRSKIGKAKLQQAIDETRRLLEVPDDYLIAIVPASDTGAIEMAMWSMLGPK-PVDLCHWESFGKGWLGDAQSHLK-LDNVTEI-TAGYGQLPDLSQTNPDHD---IVFTWNGTTSGVCVPNADWISPdrtGITFNDATSAVFAMEIDWSKVDVTTYSWQKVMGGEGAHgMLILSPRAVERLESftpenrPLPKIFRMVKKGKvdaalfKGSTINTPSMICVEDYLDALAWADSVGGLQGLIGRSQANLAAVSAAVDAHDWLNFLAVDPLNRSSTSVCLTVDMEaaKL 336
                  9*********************************999999999999999987.99****************99988.6655555.578*****8887776666...66789*******98865544333338899******************************998725566667788877778888877777765443321112237899***********************************************999****************998764344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|39897_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   45.6   0.1      4e-12   44.2   0.0    1.7  2  TIGR00229 sensory_box: PAS domain S-box protein
    3.6e-06   23.6   0.0    4.6e-06   23.2   0.0    1.1  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0025   14.8   0.0     0.0041   14.0   0.0    1.3  1  TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR
  ------ inclusion threshold ------
      0.013   12.3   0.0      0.024   11.5   0.0    1.4  1  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
      0.023   12.7   0.0      0.047   11.6   0.0    1.5  1  TIGR02373 photo_yellow: photoactive yellow protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   4.9e-15     4e-12       7      94 ..      11      98 ..       7     112 .. 0.84
   2 ?   -1.5   0.0      0.69   5.6e+02      91     101 ..     173     183 ..     124     197 .. 0.52

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 4.9e-15
    TIGR00229  7 yrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwve 94
                  r++ + s+++i+++d++G+i + N+a+e++ GY++ ++iG++  +   pe ++ + + ++++ ++ge+e + +  ++ +++G+ +w  
  MMETSP1174-20130828|39897_1 11 VRTFSDVSNEPIVLTDDKGRIWHCNTAWEKMCGYTRTQVIGKTNKIlQGPETNKLQAHDMVKTLRSGEQEAHIQIYNY-KASGQGFWND 98
                 57888899***********************************99944455555555556666666***********9.9999999965 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.69
    TIGR00229  91 iwvevsvspir 101
                  +w++ +  +i+
  MMETSP1174-20130828|39897_1 173 YWMNHVADEIT 183
                  33333333333 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.7e-09   4.6e-06      11      69 ..      16      74 ..       7     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 5.7e-09
    TIGR02938 11 dqapvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgsl 69
                 d ++  i +td+k  i + n+a++++ Gy++ +viGk + +l    t ++   ++ ++l
  MMETSP1174-20130828|39897_1 16 DVSNEPIVLTDDKGRIWHCNTAWEKMCGYTRTQVIGKTNKILQGPETNKLQAHDMVKTL 74
                 555567899*********************************99999888777777666 PP

>> TIGR02040  PpsR-CrtJ: transcriptional regulator PpsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     5e-06    0.0041     132     210 ..       8      86 ..       3      99 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5e-06
    TIGR02040 132 EtRYRlllevsseavllvdvstgrileansaAaalLgaegqslvGre..laqeleerereeleellrevratgkaaevrie 210
                    + R+  +vs+e+++l+d  +gri   n+a  ++ g ++ +++G++  ++q+ +e+++ + +++++ +r+ ++ a+++i 
  MMETSP1174-20130828|39897_1   8 KKKVRTFSDVSNEPIVLTDD-KGRIWHCNTAWEKMCGYTRTQVIGKTnkILQG-PETNKLQAHDMVKTLRSGEQEAHIQIY 86 
                  56779999**********96.79**********************86225544.556666778999999988888888775 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.9e-05     0.024       5      63 ..       8      65 ..       4     103 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.9e-05
    TIGR02966  5 lerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelkey 63
                 ++++r+  ++ ++++v++d++++i  +N+a ek+ g +  + +g+  +++++ pe +++
  MMETSP1174-20130828|39897_1  8 KKKVRTFSDVSNEPIVLTDDKGRIWHCNTAWEKMCGYTRTQVIGK-TNKILQGPETNKL 65
                 67889999999**************************88876665.4455555554332 PP

>> TIGR02373  photo_yellow: photoactive yellow protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-05     0.047      30      98 ..      23      89 ..       5      94 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.7e-05
    TIGR02373 30 iqldesGrilkynkaegelaGrdPekviGknffkevaPctdskefsGrfkegvasGdlnamldyvfdyq 98
                 ++ d++Gri + n a  +++G +  +viGk       P t+  + +  + +  +sG+ +a ++ +++y+
  MMETSP1174-20130828|39897_1 23 VLTDDKGRIWHCNTAWEKMCGYTRTQVIGKTNKILQGPETNKLQAH-DMVKTLRSGEQEAHIQ-IYNYK 89
                 678***************************7544444555444433.4567778888888775.35555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 962.24
//
Query:       MMETSP1174-20130828|39916_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1191.90
//
Query:       MMETSP1174-20130828|39954_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-167  554.0   0.5   2.3e-104  347.8   0.0    3.0  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.8e-72  240.2   1.1    4.8e-30  102.1   0.0    4.1  4  TIGR00484 EF-G: translation elongation factor G
    2.9e-50  168.9   0.5    9.8e-20   68.1   0.1    4.3  4  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.1e-35  120.9   1.9      3e-14   50.1   0.2    4.6  5  TIGR01393 lepA: GTP-binding protein LepA
    1.3e-16   58.6   0.3    1.7e-15   55.0   0.2    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    3.2e-15   53.4   0.4    1.6e-08   31.2   0.0    3.1  3  TIGR00503 prfC: peptide chain release factor 3
    2.2e-13   47.5   1.2    1.9e-05   21.4   0.1    3.1  3  TIGR00485 EF-Tu: translation elongation factor Tu
    5.5e-13   46.3   1.2    5.5e-10   36.4   0.1    2.6  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    2.4e-10   37.6   0.1    9.5e-08   29.0   0.0    2.5  2  TIGR00487 IF-2: translation initiation factor IF-2
    2.6e-08   30.6   3.2    0.00059   16.2   0.1    2.9  3  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    9.1e-07   25.5   0.1    0.00082   15.7   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.3e-06   25.7   2.7     0.0041   14.2   0.0    2.7  3  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    4.6e-05   20.5   1.4     0.0048   13.8   0.1    2.9  3  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    0.00024   18.1   0.5      0.074    9.9   0.1    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.1   2.3e-21   6.6e-19       6      85 ..       6      85 ..       2      94 .. 0.95
   2 !  138.0   0.1   2.3e-43   6.8e-41      82     213 ..     146     276 ..      83     308 .. 0.86
   3 !  347.8   0.0  7.8e-107  2.3e-104     235     720 .]     371     882 ..     333     882 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 2.3e-21
    TIGR00490  6 iakikelmekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheyegne 85
                 i++++e+m  ++ ir + ++ah+dhgk+tl+d l++ ag+i+   ag+ +f d   +eqergiti+++ +sm  eye +e
  MMETSP1174-20130828|39954_1  6 IEQLREIMDFKHNIRSMSVIAHVDHGKSTLTDSLVSKAGIIASSRAGDARFTDTRADEQERGITIKSTGISMFFEYELDE 85
                 8999************************************************************************9765 PP

  == domain 2    score: 138.0 bits;  conditional E-value: 2.3e-43
    TIGR00490  82 egneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerlikiiaevnklikkmapeefkdkwkvrvedgsvafgsayynwaisvpi 213
                    + y+inlid+pghvdf  +vt a+r  dga+vvv+++egv  qtetvlrqa+ e+v+pvl++nkvdr + el+l aeel + + + i+ vn +i + + e    + +v+  +g++afgs +++wa ++  
  MMETSP1174-20130828|39954_1 146 ANKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRALLELQLPAEELYQAFARAIESVNVVIATYNDEAL-GDLQVDPSKGTIAFGSGLHQWAFTLKH 276
                  4578********************************************************************************************99998888.899*******************98754 PP

  == domain 3    score: 347.8 bits;  conditional E-value: 7.8e-107
    TIGR00490 235 elakk.aplyqvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncd..pegplavvitkivvdkhagev.avgrlysgaikkgsevylvdskak.........ariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek.agvevetsepivvyretvtgtsp.vvegkspnkhnrlyivvepleesvlqafkegkikdvkvkkkeiakeli.eagldkeeakrveev....yegnllinvtrgiqyldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqe.g.dmvtikakvpvaemfgfagairgategralwstef...agfekvpr...elqeelvkevrkrkglkle 720
                   + +k  p  + vl+m++  lpsp+ aq+yr+a++++g l+ ea  a+  cd  p  pl + ++k+v   + g   a gr+ysg++k g++v +++ + k         +++q+  ++mg  + +v++ipagn + +vg+ +    +   +t  + ++++++k    pvv va+e k +kdlpkl+e ++++ak dp v     eetgeh+i+g gelhlei  k  +e+ +g ev++++piv yre+++ +s+ +  +kspnkhnrly++  pl e+v +a+ e  + d + + k +a+ +  e g d  ea++++ +       n++ + t+g+ yl e+ke +++gf  a +ngp+a e+  g k  l d+ lh d++hrg  q++p++r   fa++  + pvl ep+  v i+vpqd mg +   +++rrg ++e +q+ g  m+ +ka  pv+e fgf  ++  at g+a+  + f   a f   p    e  ++ v + r rkgl +e
  MMETSP1174-20130828|39954_1 371 RVMQKwLPASEAVLEMIVVQLPSPVTAQQYRVATLYDGPLDDEAATAIRTCDtsPTAPLMMYVSKMVPAADRGRFyAFGRVYSGHVKTGQKVRILGPNYKpggktdlwvKNVQRTLIMMGRTQEQVQDIPAGNTCGLVGVDQYLLKSGTLTTCDTAHPIKTMKFSVSPVVRVAVEPKCAKDLPKLVEGMKRLAKSDPMVL-CYTEETGEHVIAGCGELHLEICLKDLQEDfMGTEVNIGNPIVSYRESISEESSkTALSKSPNKHNRLYVIAYPLGEEVSNAIDEK-VIDPRGDPKARARVMAdEFGWDVSEARKIWGFgpdgLGPNIFSDQTKGVDYLLEIKESVVNGFTWACKNGPMADEQLRGCKFSLQDVTLHADSIHRGMGQIMPTARRVCFASFYLSSPVLYEPIFLVDISVPQDAMGGCYGMMSQRRGHVFEEDQQpGtPMMHLKAYLPVSESFGFNSDLGKATGGKAFPQMVFshwAIFGGSPLnegEKANTAVLDARIRKGLAPE 882
                  4444426999**************************************999866899**********99999985489****************9877663333333334799999**************************9888877888888899999************************************985.678**************************99*****************987761678*************************997.99*******9999886378***********872222567****************************************************************************************************************98876332699*************************9766544111445555541114566778888899998776 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   8.7e-08   2.6e-05       8      72 ..      17      79 ..      10      85 .. 0.83
   2 !   65.2   0.0   2.4e-21   6.9e-19      71     146 ..     146     221 ..      99     250 .. 0.84
   3 !  102.1   0.0   1.6e-32   4.8e-30     269     491 ..     382     624 ..     378     634 .. 0.80
   4 !   47.7   0.0   4.8e-16   1.4e-13     529     675 ..     703     853 ..     693     866 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 8.7e-08
    TIGR00484  8 eklrniGisahidaGktttterilfytgkihkigevhdGaat.mdwmeqekerGititsaattvew 72
                 +++r + + ah+d Gk+t+t+ ++  +g    i   + G a   d    e+erGiti s+  ++++
  MMETSP1174-20130828|39954_1 17 HNIRSMSVIAHVDHGKSTLTDSLVSKAGI---IASSRAGDARfTDTRADEQERGITIKSTGISMFF 79
                 579*******************9877775...6777888865269999***********9887765 PP

  == domain 2    score: 65.2 bits;  conditional E-value: 2.4e-21
    TIGR00484  71 ewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflk 146
                    k + inlid+PGhvdf+ ev  +lr+ dGa++v+d++ Gv  q+etv rqa   +v  +++vnk+d+   + + 
  MMETSP1174-20130828|39954_1 146 ANKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRALLELQL 221
                  45889***************************************************************98666555 PP

  == domain 3    score: 102.1 bits;  conditional E-value: 1.6e-32
    TIGR00484 269 llldavvdylPsPvdvkaikaid.....edtekeielkasddepfvalafkvat...dpfvgkl.tfvrvysGvlksGsevl....nsrkekk.....ervgrlvkmhankreeieevraGdiaaliGlkdt.ttGdtlcdekaevilesmefp.ePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefk.vevnvGkPqvayretirkkaev 491
                  ++l+ +v  lPsPv  ++ +  +      d+e  + +++ d +p++ l + v +       g++ +f rvysG +k+G++v     n +   k     + v r + m  + +e+++++ aG+ + l+G+++      tl+  +++  +++m+f+  Pv+ +avePk  +d  k+   + +la+ dP    +t ee+g+ +iaG Gelhl+i ++ l+ +f   evn+G+P v+yre+i +++++
  MMETSP1174-20130828|39954_1 382 AVLEMIVVQLPSPVTAQQYRVATlydgpLDDEAATAIRTCDTSPTAPLMMYVSKmvpAADRGRFyAFGRVYSGHVKTGQKVRilgpNYKPGGKtdlwvKNVQRTLIMMGRTQEQVQDIPAGNTCGLVGVDQYlLKSGTLTTCDTAHPIKTMKFSvSPVVRVAVEPKCAKDLPKLVEGMKRLAKSDPMVLCYT-EETGEHVIAGCGELHLEICLKDLQEDFMgTEVNIGNPIVSYRESISEESSK 624
                  689999999****9988765432111113446667788899999988877554311145556643799************9733334433333233335799***************************98624678999999999999**99758*******************************99998.59************************9648***************998764 PP

  == domain 4    score: 47.7 bits;  conditional E-value: 4.8e-16
    TIGR00484 529 GGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselaf.kl..aaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseer..esvkvvkaevPlsemfGyatdlrsatqGraeysmeflkya 675
                  G     e  ++v +G+  a ++G++a   +   k  l d + h  ds +  + ++  +a     +++  ++Pvl ePi  v+++vP++ +G   G +s+rrg +  ++++  + +  +ka +P+se fG+ +dl  at G+a   m f+++a
  MMETSP1174-20130828|39954_1 703 GVDYLLEIKESVVNGFTWACKNGPMADEQLRGCKFSLQDVTLHA-DSIHRGMgQImpTARRVCFASFYLSSPVLYEPIFLVDISVPQDAMGGCYGMMSQRRGHVFEEDQQpgTPMMHLKAYLPVSESFGFNSDLGKATGGKAFPQMVFSHWA 853
                  55555566678888999999999999999999998888888885.5544332122122333334567789**********************************887776224567899*****************************9987 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.1   6.8e-15     2e-12       1      61 [.      19      79 ..      19      86 .. 0.94
   2 !   68.1   0.1   3.4e-22   9.8e-20      59     145 ..     145     231 ..     105     240 .. 0.90
   3 !   31.4   0.0   4.3e-11   1.3e-08     187     388 ..     415     617 ..     402     626 .. 0.81
   4 !   19.9   0.0   1.3e-07   3.9e-05     393     474 ..     776     858 ..     771     872 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 6.8e-15
    TIGR01394  1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavky 61
                 ir +++iahvDhGk tl D+l+ ++g++ ++ + + r+ D+   e+erGiti +   ++ +
  MMETSP1174-20130828|39954_1 19 IRSMSVIAHVDHGKSTLTDSLVSKAGIIASSRAGDARFTDTRADEQERGITIKSTGISMFF 79
                 7999************************************************998887765 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 3.4e-22
    TIGR01394  59 vkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfv 145
                  ++ k + in++D PGh Df  ev   l + dg+l++vD+ eG+  qt  vl++a++ + +p++++nk+Dr+  + +   +e ++ f+
  MMETSP1174-20130828|39954_1 145 LANKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRALLELQLPAEELYQAFA 231
                  5567799***************************************************************99888888888777765 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 4.3e-11
    TIGR01394 187 lehvpaPkadkdeplqllvttldydeylGri.aigrverGkvkkgqqvallkkd......gkiekariskllafeglerveideaeaGdivavaGlediei.getiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre..GfelsvskPkvivkei 388
                   + +++  +++ +pl + v+++   +  Gr  a grv++G+vk+gq+v++l  +        +  + +++ l ++g ++ +++++ aG+ + ++G+++  + + t+++ ++a++++++k     +s ++ v   P   k+  k+      +rL +       + +  tee+ ++ ++G GeLhl i + +++ +  G e+++++P v ++e 
  MMETSP1174-20130828|39954_1 415 ATAIRTCDTSPTAPLMMYVSKMVPAADRGRFyAFGRVYSGHVKTGQKVRILGPNykpggkTDLWVKNVQRTLIMMGRTQEQVQDIPAGNTCGLVGVDQYLLkSGTLTTCDTAHPIKTMKFS---VSPVVRVAVEPKCAKDLPKLVEG--MKRLAKS----DPMVLCYTEETGEHVIAGCGELHLEICLKDLQEDfmGTEVNIGNPIVSYRES 617
                  567788889999******************7478****************987765642223445678899999***********************98873679*********9999874...66667777788888886655443..2455543....34555667777899*****************9866699*********99984 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 1.3e-07
    TIGR01394 393 lePieeltidvpeefvgavieklgkrkgelkdmesk.gsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkge 474
                  +ePi  + i vp++++g +  ++++r+g++ + +++ g+  ++l+  +P    +Gf++++ +at G+++ + vf++++ + g+
  MMETSP1174-20130828|39954_1 776 YEPIFLVDISVPQDAMGGCYGMMSQRRGHVFEEDQQpGTPMMHLKAYLPVSESFGFNSDLGKATGGKAFPQMVFSHWAIFGGS 858
                  79***************************9887665145788899999****************************9988765 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.2     1e-16     3e-14       2      65 ..      18      82 ..      17      93 .. 0.87
   2 !   49.8   0.1   1.3e-16   3.8e-14      66     136 ..     146     216 ..     134     244 .. 0.89
   3 !   14.8   0.0     5e-06    0.0015     207     389 ..     447     634 ..     409     652 .. 0.72
   4 ?   -2.4   0.0      0.79   2.3e+02     528     565 ..     648     685 ..     636     686 .. 0.78
   5 ?    0.9   0.0      0.08        24     398     449 ..     775     827 ..     771     844 .. 0.78

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 1e-16
    TIGR01393  2 kirnfsiiahidhGkstladrllektkav.serelkeqlldsldlererGitikaqavrlkykak 65
                 +ir +s+iah+dhGkstl+d l++k++++ s+r   +++ d+   e+erGitik++ + + ++ +
  MMETSP1174-20130828|39954_1 18 NIRSMSVIAHVDHGKSTLTDSLVSKAGIIaSSRAGDARFTDTRADEQERGITIKSTGISMFFEYE 82
                 89*************************9845788999**********************988744 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.3e-16
    TIGR01393  66 dgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPs 136
                   +++y++nlid PGhvdfs ev+ +l  ++Gal++vd+  Gv  qt + +  a+ + ++ + ++nk+d   
  MMETSP1174-20130828|39954_1 146 ANKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRAL 216
                  5689***************************************************************9655 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 5e-06
    TIGR01393 207 vyvrvveGkikkgdkikllst......gkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkv.GdtitsvkkpakealpGfk.kvkpvvfaglyPidsedyeelrdaleklklnda.sltyekesskalGfGfrcGflGllhleviqerleref.dldliataPsvvyk..vklkdgevievenPsel 389
                  ++ rv++G++k+g+k+++l        +++  v++v  + + + +++e+++    G  ++g+  v +  +   t+t+++  ++++++  k  v pvv  ++ P  ++d  +l + +++l+ +d   l y +e+ + +  G      G lhle+  + l+ +f   ++ +  P v+y+  + +++ ++   ++P++ 
  MMETSP1174-20130828|39954_1 447 AFGRVYSGHVKTGQKVRILGPnykpggKTDLWVKNVQRTLIMMgRTQEQVQDIPAGN-TCGLVGVDQYLLkSGTLTTCD--TAHPIKTMKfSVSPVVRVAVEPKCAKDLPKLVEGMKRLAKSDPmVLCYTEETGEHVIAG-----CGELHLEICLKDLQEDFmGTEVNIGNPIVSYResISEESSKTALSKSPNKH 634
                  5779*************9976222221345678888777766644444444444443.345555555443145777665..5566666664699****************************972578999999888777.....4899***********9945789999******83355555566666666665 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 0.79
    TIGR01393 528 iqaaigakiiaretikalrkdvlakcyGGditrkrkll 565
                  +  ai +k+i      + r  v+a  +G d++  rk++
  MMETSP1174-20130828|39954_1 648 VSNAIDEKVIDPRGDPKARARVMADEFGWDVSEARKIW 685
                  55677788887666667788888888888888888875 PP

  == domain 5    score: 0.9 bits;  conditional E-value: 0.08
    TIGR01393 398 veePyvkatiivpeeylgailelcqekrgvlkkley.ldkervelvyelPlae 449
                  ++eP+  + i vp++ +g    ++ ++rg++ + +   ++  ++l+  lP++e
  MMETSP1174-20130828|39954_1 775 LYEPIFLVDISVPQDAMGGCYGMMSQRRGHVFEEDQqPGTPMMHLKAYLPVSE 827
                  589**************************876655404556677888888887 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.2   5.8e-18   1.7e-15       6     125 ..      22     215 ..      17     234 .. 0.95
   2 ?   -3.8   0.0       7.2   2.1e+03      93     122 ..     263     292 ..     260     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 5.8e-18
    TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGkt................................................................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlk 125
                    +++hvd+GKstL++sl  + ++i +s +  + +++  + ++e+G+t                                                                                y +nl+D +G++df         ev++ l+ +d+++ v+d+ eg+  qt+++ ++a ++ v  +l+vnK+D  
  MMETSP1174-20130828|39954_1  22 MSVIAHVDHGKSTLTDSLVSKAGIIASSRAgDARFTDTRADEQERGITikstgismffeyeldeeeqviqdellkaaaatskkivlkakataaensddeaedaapaeveeeevqeleplseaelanksYMINLIDSPGHVDF-------SSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRA 215
                  569***********************9999656667777779****************************************************************************************************.......**************************************************75 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 7.2
    TIGR00231  93 veeglekqtkeiiheakkkgvpiilvvnKi 122
                  + +gl ++  +++h ak +++++ + v+K+
  MMETSP1174-20130828|39954_1 263 FGSGLHQWAFTLKHFAKIYSAKFGIKVSKM 292
                  56788999999****999999988887775 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   2.2e-05    0.0066      10      77 ..      18      81 ..       8      86 .. 0.79
   2 !   31.2   0.0   5.5e-11   1.6e-08      78     148 ..     148     218 ..     139     246 .. 0.81
   3 !    5.8   0.0    0.0029      0.84     314     456 ..     447     601 ..     426     639 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.2e-05
    TIGR00503 10 krrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisitts..vlqfdy 77
                 + r++++i+h d Gk+tlt+ ++       +aG + + ++     +d  + e++rGi+i ++   + f+y
  MMETSP1174-20130828|39954_1 18 NIRSMSVIAHVDHGKSTLTDSLV------SKAGIIASSRAGDARFTDTRADEQERGITIKSTgiSMFFEY 81
                 56899**************9985......6777777777777777888889********88722456776 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 5.5e-11
    TIGR00503  78 rdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllev.trlrdlpiltflnkldrdird 148
                  +  ++nl+d+pGh dfs +   +l  +d al+v+d+  Gv  +t  +l      r  p+l ++nk+dr  ++
  MMETSP1174-20130828|39954_1 148 KSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQaISERVRPVL-MVNKVDRALLE 218
                  6679****************************************9988651566777776.79*****9875 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0029
    TIGR00503 314 aflrvvsGkyekdmklk.....hvrtgkd...v.vlsdalkllagdresveeayaGdiiGlh.......nhGtiqiGdtvtqGeklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGavqvlrsldendlivaavGvlqfdvvvarlkeeyn 456
                  af rv sG+ + + k++         gk+   v  + ++l ++   +e+v+   aG+  Gl          Gt++  dt +  +++kf+     +p +   +  k      +l  G+ +l +   + +  + +  + ++a  G l +++  + l+e++ 
  MMETSP1174-20130828|39954_1 447 AFGRVYSGHVKTGQKVRilgpnYKPGGKTdlwVkNVQRTLIMMGRTQEQVQDIPAGNTCGLVgvdqyllKSGTLTTCDTAHPIKTMKFSV----SPVVRVAVEPKCAKDLPKLVEGMKRLAKSDPMVLCYTEETGEHVIAGCGELHLEICLKDLQEDFM 601
                  788888888888888873322212234442222246778889999999****9999988764222222268999*******999999965....66666667777777777899999999998887776666777999999*********999999873 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   6.4e-08   1.9e-05      14      68 ..      21      75 ..       9      89 .. 0.79
   2 !   15.4   0.1   4.2e-06    0.0012      34     140 ..     105     214 ..      93     233 .. 0.65
   3 !    7.8   0.0   0.00088      0.26     200     248 ..     418     467 ..     397     527 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.4e-08
    TIGR00485 14 nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahv 68
                  +  i hvdhgk+tlt +++      ++++a +    d+  +e++rgiti+++ +
  MMETSP1174-20130828|39954_1 21 SMSVIAHVDHGKSTLTDSLVSKAGIIASSRAGDARFTDTRADEQERGITIKSTGI 75
                 5678*************99988777777777777888999**********98765 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.2e-06
    TIGR00485  34 tvlakegkaaa.kkydeidkapeekar.gitintahveyetekrhy..ahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl 140
                   vl+ +++aa   + +  d+ap e +   +       e e +++ y    +d pgh d+  ++ +     dga++vv + +g+  qt   +  a    v + v+++nkvd 
  MMETSP1174-20130828|39954_1 105 IVLKAKATAAEnSDDEAEDAAPAEVEEeEVQELEPLSEAELANKSYmiNLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERV-RPVLMVNKVDR 214
                  345444444430344445788876554144444445566666666622579********99987777788****************9654443333333.44566777775 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00088
    TIGR00485 200 iptperevdkpfllaiedvfsitgrgtv.vtgrvergevkvgeeveivgl 248
                  i t + +   p+++ +  ++  + rg   + grv  g+vk+g++v i+g 
  MMETSP1174-20130828|39954_1 418 IRTCDTSPTAPLMMYVSKMVPAADRGRFyAFGRVYSGHVKTGQKVRILGP 467
                  444555556799**************86378*****************95 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00083      0.24       5      38 ..      24      70 ..      21      89 .. 0.85
   2 !   36.4   0.1   1.9e-12   5.5e-10      47     138 ..     147     237 ..     140     254 .. 0.85
   3 ?   -2.7   0.0       1.3   3.7e+02     196     215 ..     449     468 ..     448     470 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00083
    TIGR00475  5 taGHvDHGKttLlkaltgid.............adrlPeEkKRGlti 38
                 +  HvDHGK tL  +l   +             +d + +E+ RG+ti
  MMETSP1174-20130828|39954_1 24 VIAHVDHGKSTLTDSLVSKAgiiassragdarfTDTRADEQERGITI 70
                 568***********997655566789999999999999*******99 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1.9e-12
    TIGR00475  47 ledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeefl 138
                   + + ++liD PGH  f +++ a++ + d+al+vvd+ eGv +qt+  L+ + +  ++  + +++K+Dr+  e+   +Ee+ +++ +  e  
  MMETSP1174-20130828|39954_1 147 NKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVR-PVLMVNKVDRALLELQLPAEELYQAFARAIESV 237
                  45589******************************************99998888888.78899******9999889999999888776655 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.3
    TIGR00475 196 GtafsGevkvgDelvlepin 215
                  G ++sG+vk g ++++ + n
  MMETSP1174-20130828|39954_1 449 GRVYSGHVKTGQKVRILGPN 468
                  789************98755 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0035         1      90     110 ..      22      42 ..       4      54 .. 0.77
   2 !   29.0   0.0   3.2e-10   9.5e-08     132     200 ..     147     215 ..     142     230 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0035
    TIGR00487  90 vtimGhvDhGktsLLdsirkt 110
                  + ++ hvDhGk +L ds+ ++
  MMETSP1174-20130828|39954_1  22 MSVIAHVDHGKSTLTDSLVSK 42 
                  56889***********98554 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.2e-10
    TIGR00487 132 edkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkp 200
                  ++  +i ++D PGh  f+s  +   ++tD +++vv  ++Gv  qt+  +  a +  v  ++++nk+D+ 
  MMETSP1174-20130828|39954_1 147 NKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRA 215
                  44559****************************************************99********86 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     1e-05     0.003       9      38 ..      21      50 ..      13      88 .. 0.80
   2 !   16.2   0.1     2e-06   0.00059      25     154 ..      92     215 ..      68     249 .. 0.70
   3 ?   -1.1   0.0      0.37   1.1e+02     204     261 ..     405     463 ..     395     509 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-05
    TIGR00483  9 nvafighvdsgkstlvgrllyeagaiderl 38
                  +++i hvd+gkstl+  l+ +ag i+   
  MMETSP1174-20130828|39954_1 21 SMSVIAHVDHGKSTLTDSLVSKAGIIASSR 50
                 5789********************998754 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 2e-06
    TIGR00483  25 grllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
                   +ll  a a +++++ k k  a+e+     e a   + + ee e      ++ + +  + y + ++d+pgh df  ++ +    +d a++vv++ +g   v  qt   +  a +  ++ + + +nk+d+ 
  MMETSP1174-20130828|39954_1  92 DELLKAAAATSKKIVLKAKATAAENSDDEAEDAAPAE-V-EEEEVQELEPLSEAELANKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEG---VCVQTETVLRQAISERVRPV-LMVNKVDRA 215
                  5566666666666666666666666555555443332.2.22333333456777888999****************99999999**********999...66777666666666666664.457888875 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.37
    TIGR00483 204 wykgktllealdkleapekpvdkplripiqdvysitgvgtv.pvgrvetgvlkkgekvv 261
                   y+g+   ea  ++++ +     pl + +  +   +  g     grv +g +k+g+kv 
  MMETSP1174-20130828|39954_1 405 LYDGPLDDEAATAIRTCDTSPTAPLMMYVSKMVPAADRGRFyAFGRVYSGHVKTGQKVR 463
                  67777777888888888888888888888888888877764268999999999999984 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00086      0.25       7      26 ..      22      41 ..      18      57 .. 0.74
   2 !   15.7   0.0   2.8e-06   0.00082      73     133 ..     154     214 ..     124     217 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00086
    TIGR00491  7 vavlGhvdhGkttlldkirk 26
                 ++v+ hvdhGk+tl d +  
  MMETSP1174-20130828|39954_1 22 MSVIAHVDHGKSTLTDSLVS 41
                 589*************8643 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.8e-06
    TIGR00491  73 vidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                  +id+PGh  f+s       ++d a++vvd  eG+  qt+  +    + ++  v+  nk+dr
  MMETSP1174-20130828|39954_1 154 LIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDR 214
                  7**************************************9999999999999999*****8 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.4e-05    0.0041       7      45 ..      21      72 ..      16     106 .. 0.70
   2 !   10.9   0.1   0.00014     0.041      78     146 ..     147     213 ..     118     236 .. 0.75
   3 ?   -2.3   0.0       1.5   4.3e+02     234     302 ..     449     517 ..     448     561 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.4e-05
    TIGR03680  7 niglvGhvDhGkttlvkal...tGv..........wtdthseelkrgisikl 45
                 +++++ hvDhGk+tl+ +l   +G+          +tdt  +e+ rgi+ik 
  MMETSP1174-20130828|39954_1 21 SMSVIAHVDHGKSTLTDSLvskAGIiassragdarFTDTRADEQERGITIKS 72
                 5789************998433232222222333379999999999999995 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00014
    TIGR03680  78 ellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkid 146
                  +    + ++D+PGh  +   + +   + dgal+v++  e v   qt+  l    i      v++ nk+d
  MMETSP1174-20130828|39954_1 147 NKSYMINLIDSPGHVDFSSEVTAALRITDGALVVVDTIEGV-CVQTETVLRQA-ISERVRPVLMVNKVD 213
                  4566899***************999**************99.67887665543.444444455557776 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.5
    TIGR03680 234 GslvqGklkvgdeieirPGikvekegkte.y.epiltevtsleagkkkveeakPg...GlvavgtkLDPaltka 302
                  G +  G++k+g+++ i  G +++ +gkt+ + ++++ +++ +  ++++v+ +  g   Glv+v    D  l k+
  MMETSP1174-20130828|39954_1 449 GRVYSGHVKTGQKVRIL-GPNYKPGGKTDlWvKNVQRTLIMMGRTQEQVQDIPAGntcGLVGV----DQYLLKS 517
                  56778999999999986.556666666643436788899999999999998866622244444....4444444 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.18        52       8      38 ..      27      57 ..      22     108 .. 0.68
   2 !   13.8   0.1   1.6e-05    0.0048      84     172 ..     154     239 ..     145     258 .. 0.78
   3 ?    3.1   0.0      0.03       8.7     193     254 ..     404     466 ..     386     525 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.18
    TIGR02034  8 svddGkstliGrllhdtkqiledqlaalerd 38
                  vd Gkstl   l+  +  i   +    + +
  MMETSP1174-20130828|39954_1 27 HVDHGKSTLTDSLVSKAGIIASSRAGDARFT 57
                 79***********999998876655443332 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.6e-05
    TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaeklgvsdv 172
                  + d+PGh+ +  +++++   +d a+++vd+ +Gv  qt      a    ++  vl vnk+d    + +     ++ y+a+a++++  +v
  MMETSP1174-20130828|39954_1 154 LIDSPGHVDFSSEVTAALRITDGALVVVDTIEGVCVQTETVLRQAISERVRP-VLMVNKVDRALLELQLP--AEELYQAFARAIESVNV 239
                  57************************************98766665566665.6789***9776655543..45667777777765555 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.03
    TIGR02034 193 pWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGya.GtiasGsvkvGdevvvlp 254
                    y+Gp   e   ++++ ++  + +l + v  +       r ya G + sG+vk+G++v++l 
  MMETSP1174-20130828|39954_1 404 TLYDGPLDDEAATAIRTCDTSPTAPLMMYVSKMVPAADRGRFYAfGRVYSGHVKTGQKVRILG 466
                  5677777777777777778888888888888777666667778769**************985 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0033      0.97     174     211 ..      18      55 ..       2      73 .. 0.83
   2 !    9.9   0.1   0.00025     0.074     253     319 ..     169     237 ..     160     248 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0033
    TIGR03594 174 epikiaiiGrpNvGKStLvNallgeervivsdiaGtTr 211
                  +   +++i     GKStL+ +l+ +  +i+s+ aG  r
  MMETSP1174-20130828|39954_1  18 NIRSMSVIAHVDHGKSTLTDSLVSKAGIIASSRAGDAR 55 
                  445789999*************************9765 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00025
    TIGR03594 253 kaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkfl 319
                   a++  d +l+v+D+ eg+  q +++++++++e    v++vNK+D    + +   eel + + + ++ +
  MMETSP1174-20130828|39954_1 169 AALRITDGALVVVDTIEGVCVQTETVLRQAISERVRPVLMVNKVDRAllELQLPAEELYQAFARAIESV 237
                  56777788999***********9999999999999999*******875566666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.94u 0.20s 00:00:01.13 Elapsed: 00:00:00.59
# Mc/sec: 1997.73
//
Query:       MMETSP1174-20130828|40015_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 644.72
//
Query:       MMETSP1174-20130828|40026_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1154.90
//
Query:       MMETSP1174-20130828|40034_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1174-20130828|40078_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-16   56.8   0.2    1.1e-15   55.6   0.0    1.6  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      1e-15   56.1   0.2    1.1e-15   55.9   0.2    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.011   13.7   0.0      0.018   13.0   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   8.4e-19   1.1e-15      33     104 ..       2      75 ..       1      76 [. 0.90
   2 ?   -1.6   0.0      0.52   7.1e+02      47      65 ..      91     109 ..      86     119 .. 0.68

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 8.4e-19
    TIGR01126  33 aPeyeklakelkkeeekvkiakvdatae..kelaskfkvsgfPtlkffkkgkke.pvdyeGeReaeelvefveek 104
                   P ++kl++++++++ +v+ia+vd+t++  k ++++++v+g+Pt+k+f+++++e    y+G+R++++l++fv++k
  MMETSP1174-20130828|40078_1   2 KPDWDKLSADYAEHP-SVVIADVDCTTDggKPVCEEYEVKGYPTIKYFTDETDEkGDAYQGARSLSALQDFVKDK 75 
                  7***********987.6*********9977889***************9887653789**************987 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.52
    TIGR01126  47 eekvkiakvdataekelas 65 
                  +e   iak++a+   ++ +
  MMETSP1174-20130828|40078_1  91 KEVAYIAKMQAKDAAAIVK 109
                  4456788888877666555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.2   8.4e-19   1.1e-15      37     131 ..       2     106 ..       1     123 [. 0.71

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 8.4e-19
    TIGR01130  37 aPeYekAAeelkkkspkvklakvDatee..kelaqkygvsGyPtLkifrnge..sssdYnGpReaegivkylkkqsg.......Paskeletvedlekllekkevv 131
                  +P+++k  +  +++ p+v++a vD+t++  k ++++y+v+GyPt+k+f + +  +   Y+G+R+ +++ +++k++ +       P + + ++v+ + k+++k++ +
  MMETSP1174-20130828|40078_1   2 KPDWDKLSADYAEH-PSVVIADVDCTTDggKPVCEEYEVKGYPTIKYFTDETdeKGDAYQGARSLSALQDFVKDKLEtkclvddPEACDEKEVAYIAKMQAKDAAA 106
                  67777666665554.5899******9998899****************9987657788*************99997522222224444444444455554444444 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.3e-05     0.018      34      99 ..       3      74 ..       1      76 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.3e-05
    TIGR01068 34 Pvleelakeleek..vkvvKln..vdeeqeiaakygirsiPtlllfkn..gkevkrvvGakpkaalkeliek 99
                 P  ++l+++++e+  v ++ ++  +d  + + ++y+++  Pt+  f +  +++ +   Ga + +al++++++
  MMETSP1174-20130828|40078_1  3 PDWDKLSADYAEHpsVVIADVDctTDGGKPVCEEYEVKGYPTIKYFTDetDEKGDAYQGARSLSALQDFVKD 74
                 66677777776651155555543245667799***********99987225666788999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 600.34
//
Query:       MMETSP1174-20130828|40091_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1174-20130828|40089_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1323.66
//
Query:       MMETSP1174-20130828|40118_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 236.48
//
Query:       MMETSP1174-20130828|40122_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1174-20130828|40200_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-98  327.5   0.2    2.1e-98  327.2   0.1    1.1  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
    1.7e-12   45.0   2.1    1.6e-07   28.8   0.0    2.1  2  TIGR00748 HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
    4.8e-05   20.1   0.6    0.00032   17.4   0.3    2.1  2  TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
     0.0002   18.3   0.1     0.0017   15.2   0.1    2.0  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
  ------ inclusion threshold ------
       0.02   11.8   0.1       0.16    8.9   0.0    2.1  2  TIGR03722 arch_KAE1: universal archaeal protein Kae1
      0.047   11.0   0.0      0.073   10.4   0.0    1.2  1  TIGR00289 TIGR00289: TIGR00289 family protein


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.2   0.1  3.1e-101   2.1e-98       7     322 .]     114     440 ..     109     440 .. 0.93

  Alignments for each domain:
  == domain 1    score: 327.2 bits;  conditional E-value: 3.1e-101
    TIGR00747   7 svgsylPekvltnadlekm..vdtsDeWivtRtGikeRriAaddetssslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDlsAaCaGflYalsvakayvesGkyktvLvvgaeklsslvdlkDRgtcvlFgDGagavvvgeseeege....ilsvelgadgekgellrlpaaekr....aekek..eekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvktvekygntsAasiplaldelleegkikkgdlllleafGgGltwgaalvrf 322
                  s+g+    +++ n dle m  ++t DeWi+ RtGi  R++        +l+++aa +A+e  +++++didl+ivat spd  f  aaa v+a++g+++++afDl+AaC+Gfl+al++++++++ G+yk+++vvga+ ls+ vd++DR++c+lFgDGaga++++ s+ ++     +l +e++++g+++ +l+l  +  +      k++  ++    i m+G+ev+k+A r++ ++ +e++++agl+ +d+d+lv HqAn+Ri+e +a +l + ++kv+++++++gntsA sip+al+e++++gk+kkgd++ + +fG+Gl+wg+a++r+
  MMETSP1174-20130828|40200_1 114 SIGACAAPQIMPNSDLEAMahLETTDEWISSRTGISARHLLPTGMGLKELATTAAMQALEGSTVAAEDIDLVIVATSSPDDLFGDAAA-VAASIGATNAVAFDLTAACSGFLFALVTGSQFLHNGAYKNAIVVGADALSRWVDWDDRNSCILFGDGAGAMLLEGSSGDSPddfgLLGFEMHSNGKDQRHLTLGYQGDTvelaDGKHTvtRGAYAPIGMNGREVYKFATREVPNVLNEAIANAGLTVDDVDWLVLHQANIRIMEIVASRLGIPMDKVITNLSEHGNTSAGSIPIALEEAVRTGKVKKGDVIAMAGFGAGLSWGSAIIRW 440
                  788888899*******986448*************************************************************98775.7899*********************************************************************877654433455*****************9987777555423333346667789**************************************************************************************************************98 PP

>> TIGR00748  HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7   2.9e-06     0.002      53     141 ..     163     249 ..     156     260 .. 0.91
   2 !   28.8   0.0   2.3e-10   1.6e-07     216     298 ..     349     431 ..     332     439 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.9e-06
    TIGR00748  53 iaveaarnalkrakidpkdigavyvgseskpyavkptativaeaieatpdltaadlefackagtagiqaalglvesglikyglaigadt 141
                  +a  aa +al  + +  +di  v v + s p  +   a+ va +i+at    a dl  ac     ++ +   +++ g  k ++ +gad+
  MMETSP1174-20130828|40200_1 163 LATTAAMQALEGSTVAAEDIDLVIVAT-SSPDDLFGDAAAVAASIGATNA-VAFDLTAACSGFLFALVTGSQFLHNGAYKNAIVVGADA 249
                  567899***************999875.779999999999*******976.589*********************************97 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.3e-10
    TIGR00748 216 glmeklglkaedfdyavfhqpngkfylkaarilglekekvkpglltpvigntysgatpvglsavld..vaepgerilavsygsga 298
                    + + gl+ +d d+ v+hq n +++  +a  lg++ +kv + l     gnt +g++p+ l + +    ++ g+ i +  +g+g 
  MMETSP1174-20130828|40200_1 349 EAIANAGLTVDDVDWLVLHQANIRIMEIVASRLGIPMDKVITNLS--EHGNTSAGSIPIALEEAVRtgKVKKGDVIAMAGFGAGL 431
                  556789**********************************99874..57************98775125789****999999996 PP

>> TIGR01835  HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   4.7e-07   0.00032      52     160 ..     163     274 ..     148     278 .. 0.78
   2 ?    0.2   0.0     0.081        56     265     307 ..     389     430 ..     329     432 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.7e-07
    TIGR01835  52 lAasAakailden..dkskidivlvatEsgiDqskaaavyvhrllglspiarsvelkeACygAtaalqlakshvarspdkkvlviasD.iakYel..etpgEatqGAgavAlLv 160
                  lA++Aa + l+ +    ++id+v+vat s  D     a  v   +g  ++a +++l  AC g   al +  + +++   k+ +v+++D ++++    +  + +  G ga A+L+
  MMETSP1174-20130828|40200_1 163 LATTAAMQALEGStvAAEDIDLVIVATSSPDD-LFGDAAAVAASIGA-TNAVAFDLTAACSGFLFALVTGSQFLHNGAYKNAIVVGADaLSRWVDwdDRNSCILFGDGAGAMLL 274
                  899999999998867899*********87755.55555566777775.57899**********************************944565321123344555666666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.081
    TIGR01835 265 iaynrevGnlYtgslyLslaslLenaeedltGekigllsYGsG 307
                  i+   e Gn+  gs+ ++l   +    + + G+ i++  +G+G
  MMETSP1174-20130828|40200_1 389 ITNLSEHGNTSAGSIPIALEEAVRTG-KVKKGDVIAMAGFGAG 430
                  34445668888888888877776544.7788888888888877 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.4e-06    0.0017      21     121 ..     160     258 ..     144     269 .. 0.84
   2 ?    0.6   0.0     0.065        45     289     317 ..     346     374 ..     321     404 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-06
    TIGR01930  21 aedLlaavikelleragldpekidevilGnvlqageqaniaReaalaaglp.esvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillk 121
                   ++L++++  ++le + + +e+id vi++++ +       +  aa+aa ++ ++  a++++ +C+  l A+ ++ q ++ G+++ +++ G++ +Sr   + +
  MMETSP1174-20130828|40200_1 160 LKELATTAAMQALEGSTVAAEDIDLVIVATSSPDD---LFGDAAAVAASIGaTNAVAFDLTAACSGFLFALVTGSQFLHNGAYKNAIVVGADALSRWVDWDD 258
                  579999**********************9887766...3466666666665145779**************************************9765555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.065
    TIGR01930 289 AiekaLkkaglsisdidlvEinEAFAaqv 317
                    ++a++ agl+++d+d+  ++ A    +
  MMETSP1174-20130828|40200_1 346 VLNEAIANAGLTVDDVDWLVLHQANIRIM 374
                  56889999*********998887765555 PP

>> TIGR03722  arch_KAE1: universal archaeal protein Kae1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.086        59      25      75 ..     136     189 ..     124     218 .. 0.67
   2 ?    8.9   0.0   0.00023      0.16      35      75 ..     328     368 ..     308     395 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.086
    TIGR03722  25 nvkktyvpekgGihPrea...aehhaeaikkvlkealeeakvsledidavafsq 75 
                  +++++++ ++ Gi  r         +e +++   +ale ++v  edid+v +++
  MMETSP1174-20130828|40200_1 136 ETTDEWISSRTGISARHLlptGMGLKELATTAAMQALEGSTVAAEDIDLVIVAT 189
                  556677777777777764111334556677778899999999999999987764 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00023
    TIGR03722  35 gGihPreaaehhaeaikkvlkealeeakvsledidavafsq 75 
                   G++ re+ ++ ++++++vl+ea+ +a+++++d+d + + q
  MMETSP1174-20130828|40200_1 328 IGMNGREVYKFATREVPNVLNEAIANAGLTVDDVDWLVLHQ 368
                  59*********************************876655 PP

>> TIGR00289  TIGR00289: TIGR00289 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011     0.073      32      70 ..     356     394 ..     340     418 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
    TIGR00289  32 viseneesymfhvpnvhltelvaeavGipliklytaGee 70 
                  ++ ++ +  + h +n+ ++e+va  +Gip+ k+ t+  e
  MMETSP1174-20130828|40200_1 356 LTVDDVDWLVLHQANIRIMEIVASRLGIPMDKVITNLSE 394
                  55677788899********************99887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.75
# Mc/sec: 776.10
//
Query:       MMETSP1174-20130828|40228_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 754.81
//
Query:       MMETSP1174-20130828|40253_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-13   46.2   3.8    6.2e-13   46.2   2.6    1.7  1  TIGR00030 S21p: ribosomal protein S21


Domain annotation for each model (and alignments):
>> TIGR00030  S21p: ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   2.6   1.5e-16   6.2e-13       1      55 [.      60     114 ..      58     119 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.5e-16
    TIGR00030   1 ptVkVkegesidkaLrrfKrklekegilrelkkreyYekPserrrrkekaakkri 55 
                  ++V+ ++ge++++ LrrfKr + k g + el++r+y+e     ++rk ++a++r 
  MMETSP1174-20130828|40253_1  60 VQVTANDGEPLESLLRRFKREVNKSGHMIELRHRRYFEDSQDMKKRKIQEARRRV 114
                  46777899*******************************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 664.83
//
Query:       MMETSP1174-20130828|40266_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 906.33
//
Query:       MMETSP1174-20130828|40277_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.4   0.2      0.044   11.2   0.1    1.1  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.1e-05     0.044      73     108 ..      37      75 ..      19      91 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
    TIGR03593  73 a...kritvktdvlrlsidtkGgdidsleLkkyketldk 108
                  +   k++ +  + ++++++  Ggdi++++L++ ++ +++
  MMETSP1174-20130828|40277_1  37 EnyqKQVLLRLKEIKAKMNEDGGDIEDVKLQRDQALAEN 75 
                  244589999999******************998886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1174-20130828|40297_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 1648.08
//
Query:       MMETSP1174-20130828|40323_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|40329_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 611.55
//
Query:       MMETSP1174-20130828|40336_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-133  443.7   3.2   1.5e-133  443.3   2.2    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    9.3e-80  266.5   0.6    1.6e-79  265.8   0.4    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    9.9e-77  256.7   1.6    3.2e-76  255.0   1.1    1.7  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.3e-57  193.5   2.0    3.3e-57  192.2   1.2    1.5  1  TIGR03689 pup_AAA: proteasome ATPase
    5.2e-08   29.7   0.0    7.6e-08   29.2   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    8.5e-07   26.1   0.0    1.8e-06   25.1   0.0    1.6  1  TIGR02881 spore_V_K: stage V sporulation protein K
      2e-06   24.9   0.0    3.5e-06   24.1   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.1e-06   24.7   0.2     0.0011   15.9   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    2.4e-06   24.1   0.0    5.1e-06   23.0   0.0    1.5  1  TIGR00763 lon: ATP-dependent protease La
    3.8e-06   24.0   0.0      7e-06   23.1   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      2e-05   21.5   1.3    0.00034   17.4   0.0    2.7  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00091   15.6   0.0     0.0018   14.6   0.0    1.4  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0011   16.4   0.0     0.0033   14.9   0.0    1.8  2  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.002   15.5   0.0     0.0041   14.5   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0022   14.5   0.4      0.006   13.0   0.0    1.9  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0055   13.1   0.2      0.014   11.8   0.1    1.7  2  TIGR00368 TIGR00368: Mg chelatase-like protein
  ------ inclusion threshold ------
      0.016   12.6   0.0       0.04   11.4   0.0    1.6  1  TIGR01351 adk: adenylate kinases
      0.025   11.7   0.6       0.07   10.2   0.0    1.9  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.026   12.1   0.0      0.086   10.4   0.0    1.9  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.3   2.2  6.9e-136  1.5e-133       9     364 .]      45     400 ..      37     400 .. 0.98

  Alignments for each domain:
  == domain 1    score: 443.3 bits;  conditional E-value: 6.9e-136
    TIGR01242   9 rkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                  r+  ++   +++++ +l+  v+ lr+el+ l++p   v+ vv+ +++++++vk +   k+vv++ + id  +  p +rval + ++++ ++lpt+ dplv  ++ve+ p+ +y+ +GGl+kq+rei+e++elp+k+pelf+ +G+  pkGvllyGppGtGktlla+ava++t+ tfirv g+elv+kyiGeG+r+vre+f +a+e ap+iif+deid+i++ r++ s +Gd evqrt+l+ll +ldGf+p +n+kvi atnr+dild allrpGr+dr ie p p+l+ r++i+ ih+rkm+l   +dl+ + +     sGa+ ka++teaGmfa+re+r +vt+edf  av kv+
  MMETSP1174-20130828|40336_1  45 REKVQNLARITAQRNELNARVRLLREELHYLQEPGSYVGEVVKPMGKTKILVKVNPEGKYVVDLGAGIDMAKCTPNTRVALRNDSYSLHKILPTKVDPLVSLMKVEKVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFIMAREAAPTIIFMDEIDSIGSSRVEGSEGGDSEVQRTMLELLNQLDGFEPTQNIKVIMATNRIDILDAALLRPGRIDRKIEFPNPTLKSRVDIMSIHSRKMNLMRGIDLKVIGEKMSSSSGAECKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 400
                  555566678999******************************************************************************************************************************************************************************************************************************************************************************************************************************************************97 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.8   0.4   7.4e-82   1.6e-79      49     305 ..     151     408 ..     144     412 .. 0.96

  Alignments for each domain:
  == domain 1    score: 265.8 bits;  conditional E-value: 7.4e-82
    TIGR01241  49 ekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksr 305
                  + +  t++ v G+d++ +e++e+++  +k+p+ f++lG   PkGvll+GpPGtGktLla+ava   +  f+++sG+++v+ ++G G+  vr+lf  a+++aP+iif+DeiD++G++r +g  gg +e+++t+  lL ++DGfe ++++ v+ atnr d+LD aLlrPGr Dr++   +P lk r +i+++h++k++l + +dlk + ++ +  sGa+ + ++ ea ++a r+++ +vt++++e av +v+   +  ++
  MMETSP1174-20130828|40336_1 151 KVPDSTYDMVGGLDKQIREIKEVIELpIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFIMAREAAPTIIFMDEIDSIGSSRVEGSEGGDSEVQRTMLELLNQLDGFEPTQNIKVIMATNRIDILDAALLRPGRIDRKIEFPNPTLKSRVDIMSIHSRKMNLMRGIDLKVIGEKMSSSSGAECKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKDADSNM 408
                  456678999****************879*****************************************************************************************************************************************************************************************************************************987666555 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.0   1.1   1.5e-78   3.2e-76     422     694 ..     122     401 ..      81     412 .. 0.89

  Alignments for each domain:
  == domain 1    score: 255.0 bits;  conditional E-value: 1.5e-78
    TIGR01243 422 kvtkkdfkealkmvepsalrev....lve.vpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapar..gadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilk 694
                  +v+ ++   +l+++ p+ +  +     ve vp+  ++ +ggl++  +e++e +e p+k++e+f+ lg+  pkgvll+gppgtgktlla+ava  ++  fi v g e++ k++ge  + +re+f  ar+aap+iif+deid+i  +r  g++ +++  +r + +ll +ldg+e+++++ vi atnr dild allrpgr+dr i  p p  ++r++i+ ih+r+++l   +dl+ + +k    +ga+ +av+ ea + alre    v++e +e    +++k
  MMETSP1174-20130828|40336_1 122 RVALRNDSYSLHKILPTKVDPLvslmKVEkVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFIMAREAAPTIIFMDEIDSIGSSRveGSEGGDSEVQRTMLELLNQLDGFEPTQNIKVIMATNRIDILDAALLRPGRIDRKIEFPNPTLKSRVDIMSIHSRKMNLMRGIDLKVIGEKMSSSSGAECKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 401
                  5555555555666666654432111134449***************************************************************************************************************99985577888889999***************************************************************************************************************9987666555 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   1.2   1.5e-59   3.3e-57     107     379 ..      83     343 ..      44     409 .. 0.84

  Alignments for each domain:
  == domain 1    score: 192.2 bits;  conditional E-value: 1.5e-59
    TIGR03689 107 GeivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveelv....leevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr..Gs.GvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylt 379
                  G   ++++ +++ ++lv  + + ++vv l + +  +k  +  ++++ ++  ++l+++  ++v+ lv    +e vPd ty+ +GGld+qi +i++ +elP +h+el+   ++  PkGvllyGPPG+Gktl+a+ava           ++   f+ + G el++ky+Ge  r +r +f  are+a    P ++f+de+ds+   r  Gs G  s+v+ t++  ll +ldG e  +n+ vi a+nr d++d a+lrPGr+d ki    P  ++  di++ +  
  MMETSP1174-20130828|40336_1  83 G---EVVKPMGKTKILVKVNPEGKYVVDLGAGIDMAKCTPNTRVAL-RNDSYSLHKILPTKVDPLVslmkVEKVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAH----------HTDCTFIRVSGAELVQKYIGEGSRMVRELFIMAREAA----PTIIFMDEIDSIGSSRveGSeGGDSEVQRTML-ELLNQLDGFEPTQNIKVIMATNRIDILDAALLRPGRIDRKIEFPNPTLKSRVDIMSIHSR 343
                  3...45566788899999999999*****99999998888777766.5567999***99999999876668***************************************************************95..........46789*****************************987....99**********76662255467899999987.79***************************************************9987754 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.5e-10   7.6e-08     305     403 ..     186     278 ..     159     346 .. 0.65

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 3.5e-10
    TIGR03922 305 GlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktneli...dkaLggvlFlDEayaLvekrdgakddfGleai 403
                   l vaq  k +ll GPPGtGkt +Ar+va+           + + vs a+l+ +yige      el     +a   ++F+DE+ ++ + r + + + G   +
  MMETSP1174-20130828|40336_1 186 SLGVAQ-PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGAELVQKYIGEGSRMVRELFimaREAAPTIIFMDEIDSIGSSRVE-GSEGGDSEV 278
                  566665.57899*****************864.......4466779*************99999865222567889*******999877432.233333333 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   8.2e-09   1.8e-06      43     183 ..     193     334 ..     156     365 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 8.2e-09
    TIGR02881  43 lhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysl.......arGGekdfGkeaidtlvk.emedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveel 183
                    +++ G PGtGkt +ar +a+        +   +i v  a+lv +yiG+ ++ +re+    ++a   ++f+de  s+       + GG+ +  +  ++ l + +  +  +++ +i+a  + ++     l PG   r+  +++fp+ t +  
  MMETSP1174-20130828|40336_1 193 KGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGAELVQKYIGEGSRMVRELFimaREAAPTIIFMDEIDSIgssrvegSEGGDSEVQRTMLELLNQlDGFEPTQNIKVIMATNRIDILDAALLRPG---RIDRKIEFPNPTLKSR 334
                  346788*************9985.......56789**********************74333789999******99874433333346777776666665544112244556666666655554444445555...5666677777666554 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.6e-08   3.5e-06     119     198 ..     194     267 ..     183     290 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.6e-08
    TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                   +ll Gp G+Gktlla+++a++ d  f     + l +  y+Ge    ++ +l+       ++a   ii++deid i    
  MMETSP1174-20130828|40336_1 194 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQ-KYIGEGSR-MVRELFI----MAREAAPTIIFMDEIDSIGSSR 267
                  589***********************99888888876.6****864.4444544....45789999*********97554 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.9e-06    0.0011      46     100 ..     191     243 ..     188     250 .. 0.85
   2 !    6.4   0.1    0.0037      0.79     249     283 ..     253     286 ..     245     291 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.9e-06
    TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdl 100
                   Pk +l+ G+ G Gkt +ar +a  ++  fi+v  +   +  y+G     +vr+l
  MMETSP1174-20130828|40336_1 191 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQ-KYIGEG-SRMVREL 243
                  59*******************************9988775.588854.5677777 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0037
    TIGR00390 249 Giifideidkiakkg.essgadvsreGvqrdllPiv 283
                   iif+deid i  +  e s  +     vqr +l ++
  MMETSP1174-20130828|40336_1 253 TIIFMDEIDSIGSSRvEGS--EGGDSEVQRTMLELL 286
                  69*********99884444..444456999999876 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.4e-08   5.1e-06     354     434 ..     193     269 ..     169     298 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.4e-08
    TIGR00763 354 kilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglk.kvktenP.lillDEiDKlg....s 434
                  k + l+GPPG GKt la+++A+ ++ +f+r+s  G    ae+    + Y+G    +++  l   ++ + P +i++DEiD +g    +
  MMETSP1174-20130828|40336_1 193 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS--G----AELV---QKYIGE-GSRMVRELFiMAREAAPtIIFMDEIDSIGssrvE 269
                  55789*************************99..3....4443...569997.5688887751556667746679999999954442 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.2e-08     7e-06      29      94 ..     191     264 ..     166     270 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.2e-08
    TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvklkitsgpal.ekp....gDlaailtal...eegdvlfiDeihrls 94 
                  +   vllyGPPG Gkt la+ +a+  + +   +sg +l +k     + ++  l  +    +  ++f+Dei  + 
  MMETSP1174-20130828|40336_1 191 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELvQKYigegSRMVRELFIMareAAPTIIFMDEIDSIG 264
                  66789********************9987655555554155332223454433333111445789999987765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.6e-06   0.00034      35      62 ..     187     214 ..     145     225 .. 0.73
   2 ?    1.6   0.5       0.1        22     249     275 ..     373     399 ..     237     413 .. 0.49

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.6e-06
    TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkvlk 62 
                  l   +p+ vl+yG++GtGKt+ +++v +
  MMETSP1174-20130828|40336_1 187 LGVAQPKGVLLYGPPGTGKTLLARAVAH 214
                  44579******************99976 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.1
    TIGR02928 249 reageiAeeegsekvteehvekAqeki 275
                   eag  A +e + +vt+e+ e+A  k+
  MMETSP1174-20130828|40336_1 373 TEAGMFALRERRIHVTQEDFEMAVAKV 399
                  466777777777777777777776666 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.5e-06    0.0018     152     196 ..     169     213 ..     144     226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.5e-06
    TIGR02903 152 alseivGqeraikallaklaspfpqhiilyGppGvGkttaarlal 196
                  +++e++   +    l+  l    p+ ++lyGppG Gkt  ar + 
  MMETSP1174-20130828|40336_1 169 EIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVA 213
                  55666655555566788888899******************9875 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-05    0.0033      14      41 ..     192     219 ..     188     238 .. 0.87
   2 ?   -3.0   0.0       4.8     1e+03     141     156 ..     329     344 ..     328     350 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-05
    TIGR00678  14 ahAlLfaGpeGvGkealaealakallCe 41 
                  ++ +L++Gp+G+Gk+ la+a+a+++ C+
  MMETSP1174-20130828|40336_1 192 PKGVLLYGPPGTGKTLLARAVAHHTDCT 219
                  5789**********************98 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 4.8
    TIGR00678 141 pTirSRcqrlslqpls 156
                  pT++SR   +s+++ +
  MMETSP1174-20130828|40336_1 329 PTLKSRVDIMSIHSRK 344
                  8*****9999988665 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05    0.0041      24      56 ..     195     227 ..     187     245 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-05
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  v l GP GtGkt la++va++ d   + + G +
  MMETSP1174-20130828|40336_1 195 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAE 227
                  7799*******************9999999965 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.6   3.4e+02     299     361 ..      45     108 ..      13     118 .. 0.67
   2 !   13.0   0.0   2.8e-05     0.006      81     108 ..     187     214 ..     170     221 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.6
    TIGR02902 299 reav.nlvqlaaGlalnenrkkilaediewviesgqyspksekklssepkiGlvnGlavyGpns 361
                  re v nl +++a     + r ++l+e++ ++ e g y   + k +++   +  vn  + y  + 
  MMETSP1174-20130828|40336_1  45 REKVqNLARITAQRNELNARVRLLREELHYLQEPGSYVGEVVKPMGKTKILVKVNPEGKYVVDL 108
                  4444366667776666677888888888888888888777777777766666666555555555 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.8e-05
    TIGR02902  81 lcGpnpqhviiyGppGvGktaaarlvle 108
                  l    p+ v++yGppG Gkt  ar v +
  MMETSP1174-20130828|40336_1 187 LGVAQPKGVLLYGPPGTGKTLLARAVAH 214
                  566789******************9865 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.4e-05     0.014     209     231 ..     190     212 ..     185     216 .. 0.84
   2 ?   -3.8   0.0       3.6   7.7e+02     395     418 ..     227     250 ..     221     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.4e-05
    TIGR00368 209 aGghnllllGPPGsGktllakrl 231
                  a    +ll GPPG+Gktlla+ +
  MMETSP1174-20130828|40336_1 190 AQPKGVLLYGPPGTGKTLLARAV 212
                  5566799*************986 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.6
    TIGR00368 395 llsetgrgessaevkqrvlkarei 418
                  +l ++  ge s  v++  + are 
  MMETSP1174-20130828|40336_1 227 ELVQKYIGEGSRMVRELFIMAREA 250
                  45555569*********9999986 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.04       2      44 ..     195     239 ..     194     247 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGdllRaevkkktel 44 
                  ++l GpPG+GK   a+ +a++++  + ++s  +l+ + + +++ +
  MMETSP1174-20130828|40336_1 195 VLLYGPPGTGKTLLARAVAHHTDctFIRVSGAELVQKYIGEGSRM 239
                  6899**************988762266788888888888877766 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.3   4.9e+02     264     299 ..      17      53 ..       6      80 .. 0.51
   2 ?   10.2   0.0   0.00032      0.07      39      63 ..     195     219 ..     191     225 .. 0.90
   3 ?   -4.0   0.0       6.6   1.4e+03     143     156 ..     293     306 ..     285     313 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.3
    TIGR02397 264 klleellekgvdleklledliellrdlllvkktk.se 299
                  + ++++ ek++ l+++ ++ i+ l+ ++  k ++ ++
  MMETSP1174-20130828|40336_1  17 ANVNDVQEKEIGLNSFYQSKIDELEIVAREKVQNlAR 53 
                  4455555555555555555555544333333333222 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00032
    TIGR02397  39 yLfsGprGvGKTsiArilAkalNCe 63 
                   L++Gp G+GKT +Ar +A+   C+
  MMETSP1174-20130828|40336_1 195 VLLYGPPGTGKTLLARAVAHHTDCT 219
                  699*****************99996 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6.6
    TIGR02397 143 ePpehvvFilaTte 156
                  eP ++++ i+aT  
  MMETSP1174-20130828|40336_1 293 EPTQNIKVIMATNR 306
                  89999999999965 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.5   7.6e+02     105     137 ..      47      80 ..      41      92 .. 0.72
   2 ?   10.4   0.0    0.0004     0.086       2      27 ..     196     221 ..     195     231 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 3.5
    TIGR01313 105 kevilkRlk.sRkghfmkadllesqfeaLeepta 137
                  k  +l+R++ +R+    ++ ll   ++ L+ep++
  MMETSP1174-20130828|40336_1  47 KVQNLARITaQRNELNARVRLLREELHYLQEPGS 80 
                  5556677651566667788999999999999875 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0004
    TIGR01313   2 vlmGvaGsGkstiakelakklgakfi 27 
                  +l G+ G+Gk+ +a+++a++ +++fi
  MMETSP1174-20130828|40336_1 196 LLYGPPGTGKTLLARAVAHHTDCTFI 221
                  578*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.39u 0.39s 00:00:00.78 Elapsed: 00:00:00.51
# Mc/sec: 1071.44
//
Query:       MMETSP1174-20130828|40354_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-34  117.6   0.0    1.8e-34  117.2   0.0    1.2  1  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
    1.3e-27   94.6   0.0    1.7e-27   94.2   0.0    1.2  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    2.1e-18   64.2   0.4    3.7e-18   63.4   0.3    1.6  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   1.3e-37   1.8e-34      55     292 ..      89     333 ..      45     340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 117.2 bits;  conditional E-value: 1.3e-37
    TIGR00511  55 ietrPtavslpnalryvlkel....sg..edveelreevieradefieklekaleklGeiGakrikdGdvvmthCnseaalsviktafeqGkdievivtetrP.rkqGhitakelrelGipvtlivdsaaryflkevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllG..elveieerdaeevvdeeelkelgavkvrnPafdvtPaeyidviitekGliPPesav 292
                  + +  ta+sl    ++ ++++    ++   d ++ +e +++r  +f + +e++   + ++G   i+ G vv+th +s+   +v+ +a++qGk+ +vivte     +  +  a+  + +G+pvt++ d+a+  +++ vd+v+vGa+a+   G v+n+ Gt q+ ++    ++++ vaae+yk++    l   +l +  +r+++ v+++ +l +  +v    P  d tPa+yi ++ t+ G++ P+++ 
  MMETSP1174-20130828|40354_1  89 VASSKTALSLRSGCELFVRHVtrtvDDfpGDFQACKEALLRRGGAFAQLTERSRLTISRLGHPFIRHGSVVLTHGRSRVVEAVLMAAVQQGKHFHVIVTECSAiANEAQDQARFYSGAGLPVTVVTDAAVATIMQRVDMVIVGAEAVVESGGVVNRTGTYQIGIVCAALKKPLYVAAESYKFARLYPLDqrDLPKTVTRNSSCVLEHLKLPD--GVGALVPKCDYTPANYITLLFTDLGVLTPAAVS 333
                  55567888888765555554433224322588999*****************************************************************87625677778889999*****************************************************************976544301344566777777776655555..888889**********************99875 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.2e-30   1.7e-27      58     303 .]      90     329 ..      53     329 .. 0.84

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 1.2e-30
    TIGR00524  58 ssRPtAvnLsnalervlkalks.....sedveevkeslleeaeelieedletnrkiGengaklikdgdtvlthCnaGslatsdygtAlgvirsawedgkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetGedii...iEERdpeEvavvegvriaplevkvynpAFDitPaelidaiitEkGvitp 303
                  +s  tA++L  + e  ++ +++       d ++ ke ll++   +++  +++   i + g   i++g +vlth  +            +v+ +a+++gk+ +vi +E       ++  a     +g++vt++tD+ava +++  ++d+vivGA+++v+ g v+n+ Gt+q+ +++ + + p +vaA+ ++f       ++        R+ + v    +    p +v +  p  D tPa++i+ + t+ Gv+tp
  MMETSP1174-20130828|40354_1  90 ASSKTALSLRSGCELFVRHVTRtvddfPGDFQACKEALLRRGGAFAQLTERSRLTISRLGHPFIRHGSVVLTHGRS--------RVVEAVLMAAVQQGKHFHVIVTECSAIANEAQDQARFYSGAGLPVTVVTDAAVATIMQ--RVDMVIVGAEAVVESGGVVNRTGTYQIGIVCAALKKPLYVAAESYKFARLYPL-DQRDlpkTVTRNSSCVL---EHLKLPDGVGALVPKCDYTPANYITLLFTDLGVLTP 329
                  455677777766554444333311113457899****************************************999........4556799***************************************************..***********************************************987655.33330013345544444...56789****************************987 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.3   2.7e-21   3.7e-18     173     334 ..     170     328 ..      57     329 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 2.7e-21
    TIGR00512 173 gvirsakekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRd.eeEvtkvsg....vriaakgievynpaFDvtPaelitaiitekGvve 334
                  +v+ +a ++g++ hv ++E   +   a+  a   + +g+p+t+++D ++a++++  +vd+vivGa+ +++ G + N+ Gtyq+ +++ a + p++vaa +  +          ++++Rd ++ vt+ s     +   ++g+ +  p  D tPa+ it + t+ Gv++
  MMETSP1174-20130828|40354_1 170 AVLMAAVQQGKHFHVIVTECSAIANEAQDQARFYSGAGLPVTVVTDAAVATIMQ--RVDMVIVGAEAVVESGGVVNRTGTYQIGIVCAALKKPLYVAAESYKFA------RLYPLDQRDlPKTVTRNSScvleHLKLPDGVGALVPKCDYTPANYITLLFTDLGVLT 328
                  78999**************************99********************9..8*****************************************876654......34455555533444444444443667899**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1154.06
//
Query:       MMETSP1174-20130828|40358_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 799.93
//
Query:       MMETSP1174-20130828|40365_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 1821.45
//
Query:       MMETSP1174-20130828|40370_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 381.83
//
Query:       MMETSP1174-20130828|40373_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-07   26.4   1.4      8e-07   26.1   1.0    1.1  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
     0.0018   15.8   0.9     0.0025   15.3   0.6    1.2  1  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.0   3.9e-10     8e-07      98     206 ..      80     194 ..      71     209 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.9e-10
    TIGR01302  98 tvedvlelkekkgisgvpvvedgkeegklvGivtkkd....lrfvkd..kskkvsevmt..keevitvkeeidleeaeevleekkieklpvvdke.gelvglvtvkdiekakefpkas 206
                   v+++ + +   +i ++ v+ d   +g + Gi++++d    ++f+ +  +++kvsev t    +++tv+ +  +++ +e +  + i +l++ +ke +e+vg+++vkdi+k  + ++ +
  MMETSP1174-20130828|40373_1  80 MVAEAVKRMVALKIGAIAVTGD---DGDVNGIISERDflnkVAFLGKdsETTKVSEVCTsgVANLVTVTRGNPIDRCMEKMLAREIRHLLIREKEtSEIVGMISVKDIVKCAHEKHLA 194
                  5666666666667777777777...4689******883333456544115678*****977799***************************9987369************98877754 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   1.2e-06    0.0025     173     267 ..      79     179 ..      70     180 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.2e-06
    TIGR00393 173 aslkdallelsekrlGlavvvdeneqlkGvltdGdlrr..allgggalkkevkdvmtlggk...tlksdallveakellkkrkitslvvvdde.nkllGvl 267
                    + +a+  +   ++G ++v  ++ +++G++++ d     a lg ++ +++v +v t+g     t+ +++ +    e + +r+i+ l++ ++e ++++G++
  MMETSP1174-20130828|40373_1  79 EMVAEAVKRMVALKIGAIAVTGDDGDVNGIISERDFLNkvAFLGKDSETTKVSEVCTSGVAnlvTVTRGNPIDRCMEKMLAREIRHLLIREKEtSEIVGMI 179
                  5678899999999**********************76557889**************99761114557777888899999999999888775516788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 717.48
//
Query:       MMETSP1174-20130828|40397_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.52
# Mc/sec: 225.90
//
Query:       MMETSP1174-20130828|40413_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-15   53.4   0.0    5.9e-15   52.9   0.0    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
      0.001   15.8   0.0     0.0034   14.1   0.0    1.8  3  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0082   13.6   0.0       0.73    7.2   0.0    2.1  2  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   4.3e-18   5.9e-15       3     219 ..      25     240 ..      23     303 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 4.3e-18
    TIGR01214   3 litGakgqlgreLveqlskegsevvaltrsqldledpealeellreikPdvvvntaAyt...dVDkaEseaekayavNalatenlAraaarvgallvhiSTDYvFDG.....ekkrpYreedetnP.lnvYgqsKlaGEvavraasekalivRtswlygasgg.rnFvktmlrlakereelkvvadQigsPTyakdlaevlaallereargvyHlanegqvSwyefa 219
                  +i+G +g lg  L + l+ +g++ v  +++ +   + e+l+  l+e kP  v+n++  t   +VD +E+++++a + N+++++n+A ++++ g+    + T  +F        +++ ++e+d++n   ++Y+++K   E + r++s  +l +R+    +   + rnFv+ ++r  k       v +   s T+ +dl  + + ++e++ +g+y + n g +S  e  
  MMETSP1174-20130828|40413_1  25 MILGKSGWLGGMLIKLLTDKGKDFVLANSRTY---NRESLAAELDEHKPTHVLNASGVTgrpNVDWCETHQAEALRSNVIGSMNVADLCEARGIHHTLYATGCIFEYdeahtIGGKGFTEDDKPNFdGSFYSKTKGFLEDMLRSYST-TLCLRVRMPISDDLApRNFVTKIVRYDK-------VVNIPNSMTVLADLMPMSVLMAEHKLEGIYNFCNPGAISHNEIL 240
                  79******************999999999755...567788899999**********997667******************************************874444446789********62589***********999986.5666776655444444******999754.......33344567778888888888888888888888888888876654 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.055        76       4      30 ..      26      52 ..      24      70 .. 0.79
   2 !   14.1   0.0   2.5e-06    0.0034      48     161 ..      47     168 ..      34     175 .. 0.82
   3 ?   -2.6   0.0      0.29   3.9e+02     243     281 ..     214     253 ..     205     262 .. 0.70

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.055
    TIGR01179  4 vtGgaGyiGshvvrqllekgkevvvlD 30
                 + G +G++G   ++ l++kgk+ v+ +
  MMETSP1174-20130828|40413_1 26 ILGKSGWLGGMLIKLLTDKGKDFVLAN 52
                 7899****************9987543 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 2.5e-06
    TIGR01179  48 evklvegdladkekleavleeekidaviHfaali...avgEsvkePlkYYennvvntleLleamqkagvkkliFsssaav.Ygesekv...pisEespln.pinpYGrsklmvErilkdlkk 161
                  +++l ++   ++e+l+a l+e+k+  v+  ++++   +v    ++ ++  ++nv +++++ +++++ g+++ +++  +   Y e +++    ++E+ + n   + Y ++k  +E +l+ +++
  MMETSP1174-20130828|40413_1  47 DFVLANSRTYNRESLAAELDEHKPTHVLNASGVTgrpNVDWCETHQAEALRSNVIGSMNVADLCEARGIHHTLYATGCIFeYDEAHTIggkGFTEDDKPNfDGSFYSKTKGFLEDMLRSYST 168
                  66677777789999999999999999998765442228999999999***************************99997558888886333578888888699***************9976 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.29
    TIGR01179 243 ealeegge.sevynlGagqgfsvkevieavkkvsgkdikv 281
                   +l+++++   +yn  +  + s  e+++  k+  + ++++
  MMETSP1174-20130828|40413_1 214 SVLMAEHKlEGIYNFCNPGAISHNEILDMYKATIDPSFEY 253
                  4554444414689998888899999988888877766665 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00053      0.73       2     137 ..      25     153 ..      24     176 .. 0.65
   2 !    4.4   0.0    0.0038       5.2     208     240 ..     214     246 ..     203     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00053
    TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevaeeaeeealegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYg...eseekelteee.eeagddFla 137
                  +i G +G +G  l++ l++kg++ v+   ++  ++e+    a    +e +e++ ++v     ++G+p +   w e+++ e l+S +  +  +++l +++  + +++  ++ +  Y    + + k +te++  + +  F +
  MMETSP1174-20130828|40413_1  25 MILGKSGWLGGMLIKLLTDKGKDFVLANSRTY-NRESL---A----AELDEHKPTHVLNASGVTGRPNV--DWCETHQAEALRSNVIGSMNVADLCEARGIHHTLYATGC-IFEYDeahTIGGKGFTEDDkPNFDGSFYS 153
                  588999************99998654433333.23333...1....12233333444444445566655..6**********************9999986665555444.44454233334577777774333444555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0038
    TIGR01777 208 lfaleneevsGvvNataPepvrnkefakalaka 240
                    ++ +++++G++N++ P  ++++e+ +    +
  MMETSP1174-20130828|40413_1 214 SVLMAEHKLEGIYNFCNPGAISHNEILDMYKAT 246
                  5678888***************99988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 880.83
//
Query:       MMETSP1174-20130828|40438_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   16.5   0.3     0.0004   16.4   0.2    1.0  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
    0.00047   17.5   0.2     0.0006   17.1   0.1    1.1  1  TIGR03198 pucE: xanthine dehydrogenase E subunit
     0.0047   14.2   0.3     0.0065   13.8   0.2    1.2  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
     0.0084   13.9   0.2      0.011   13.5   0.1    1.3  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
  ------ inclusion threshold ------
      0.012   12.3   0.1      0.013   12.2   0.1    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   4.9e-07    0.0004       3      59 ..      69     123 ..      67     130 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.9e-07
    TIGR03311   3 lilngrevsveeekklleflredleltsvknGcaeGacGactvlvnGkavkaclftv 59 
                  li+ g++ +   ++k+ ++ r     + +k  c++G cG+c  lvnG+ v+ c ++v
  MMETSP1174-20130828|40438_1  69 LIICGKKTQGLPGQKMSDIARSVR--SPIKFNCENGKCGTCESLVNGRKVRICSYKV 123
                  566666666666666666666543..468999*********************9887 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.4e-07    0.0006       5      60 ..      68     119 ..      64     130 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 7.4e-07
    TIGR03198   5 rltvngqerkveavaakrladllreeltltgtkvscgigrcgacavlvdgkvanac 60 
                   l + g+++  +  + ++++d+ r     +  k  c+ g+cg+c  lv+g+ +  c
  MMETSP1174-20130828|40438_1  68 DLIICGKKT--QGLPGQKMSDIARSV--RSPIKFNCENGKCGTCESLVNGRKVRIC 119
                  555555544..467888999998874..4678******************999888 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   7.9e-06    0.0065      47      76 ..      97     126 ..      83     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.9e-06
    TIGR00384  47 ksCReaiCGscavkvngkpkLACktkvedl 76 
                   +C ++ CG c   vng+++  C  kv ++
  MMETSP1174-20130828|40438_1  97 FNCENGKCGTCESLVNGRKVRICSYKVPAK 126
                  59**********************999875 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.3e-05     0.011      34      59 ..      95     120 ..      67     131 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
    TIGR03193  34 vkqgcdggecgactvlvdgeprlacl 59 
                  +k  c+ g+cg+c  lv+g+ +  c+
  MMETSP1174-20130828|40438_1  95 IKFNCENGKCGTCESLVNGRKVRICS 120
                  7889****************999996 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.5e-05     0.013     285     318 ..      84     117 ..      43     122 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
    TIGR02160 285 vldaalraradlPfackgGvcgtcrakvleGkve 318
                  + d a   r+ + f c+ G cgtc ++v   kv+
  MMETSP1174-20130828|40438_1  84 MSDIARSVRSPIKFNCENGKCGTCESLVNGRKVR 117
                  4588999999***************999777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 712.74
//
Query:       MMETSP1174-20130828|40447_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 427.64
//
Query:       MMETSP1174-20130828|40472_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 982.15
//
Query:       MMETSP1174-20130828|40489_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1579.74
//
Query:       MMETSP1174-20130828|40501_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1174-20130828|40533_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1174-20130828|40537_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   97.7   0.4    1.4e-28   97.5   0.3    1.0  1  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.3   3.4e-32   1.4e-28       6      75 ..      29      98 ..      24      99 .] 0.96

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 3.4e-32
    TIGR00232  6 airlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllG 75
                   r La+d+i  a sGh G+plG+a+i  vlw + + +nP++p+W+nRDRfvlsaGhgsm lYs lh++G
  MMETSP1174-20130828|40537_1 29 EARGLAMDSITAAASGHLGLPLGAAEIGAVLWGQSMMYNPDDPTWVNRDRFVLSAGHGSMFLYSWLHIAG 98
                 5799****************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 466.68
//
Query:       MMETSP1174-20130828|40556_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1174-20130828|40572_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 917.32
//
Query:       MMETSP1174-20130828|40592_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 829.16
//
Query:       MMETSP1174-20130828|40601_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 200.43
//
Query:       MMETSP1174-20130828|40624_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|40636_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1080.36
//
Query:       MMETSP1174-20130828|40650_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1010.40
//
Query:       MMETSP1174-20130828|40659_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.4   0.1     0.0098   13.3   0.1    1.0  1  TIGR02984 Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1


Domain annotation for each model (and alignments):
>> TIGR02984  Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.4e-06    0.0098      82     132 ..      28      79 ..      21      81 .] 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.4e-06
    TIGR02984  82 rhllaqkRdirrEqsleaakrvdess.vrleallaaeessPseeaarrEaav 132
                  r + ++  di+rE+  + + + ++s+ ++ e++l++ee+sP+e+++ +Ea++
  MMETSP1174-20130828|40659_1  28 RWFVTHPSDIDREVLEQFSVQTAASMvTATEQQLTDEEESPVEVMSIEEALA 79 
                  556777789****9777665555555156899**************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 368.66
//
Query:       MMETSP1174-20130828|40666_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1174-20130828|40706_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1652.14
//
Query:       MMETSP1174-20130828|40715_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1174-20130828|40722_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1174-20130828|40721_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1174-20130828|40728_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 349.13
//
Query:       MMETSP1174-20130828|40766_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 459.32
//
Query:       MMETSP1174-20130828|40802_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1174-20130828|40844_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.1   0.0      0.015   12.1   0.0    1.0  1  TIGR02053 MerA: mercuric reductase


Domain annotation for each model (and alignments):
>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-06     0.015     267     309 ..      13      56 ..       2      65 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.6e-06
    TIGR02053 267 kpnvdgLnLekv.gvklderGeilvdeklrtsnpkiyAAGDvik 309
                  +pnv +   +++ +  l  +G ++vd ++rt+  +i+A G+ +k
  MMETSP1174-20130828|40844_1  13 SPNVRPCVFRALnDSGLVYDGRLVVDAQMRTTDESIFAGGELTK 56 
                  566666554443133456789*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 305.22
//
Query:       MMETSP1174-20130828|40848_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1174-20130828|40845_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 426.76
//
Query:       MMETSP1174-20130828|40851_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.52
# Mc/sec: 1284.36
//
Query:       MMETSP1174-20130828|40877_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1174-20130828|40882_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1174-20130828|40886_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1311.09
//
Query:       MMETSP1174-20130828|40906_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1140.76
//
Query:       MMETSP1174-20130828|40918_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 898.38
//
Query:       MMETSP1174-20130828|40922_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-65  217.5  24.3    7.3e-65  217.1  16.8    1.0  1  TIGR00841 bass: bile acid transporter


Domain annotation for each model (and alignments):
>> TIGR00841  bass: bile acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.1  16.8   1.8e-68   7.3e-65      16     310 ..      41     335 ..      25     341 .. 0.94

  Alignments for each domain:
  == domain 1    score: 217.1 bits;  conditional E-value: 1.8e-68
    TIGR00841  16 eeekvlallgfnfaalstvlstillil.LllimlslGltlelekfkellrkPkgviigllaQygimPLvgFllakvfklspelavgvlivgccPGGtaSnvltyllkGdvalsismTtiStllalgmlPLllyiyakklvdgtlkvpykkivls.lvivliPvsiGvlvksklpqiakiilk.vgliavillsvliavvlainvenlaeielklllvvillplagfllGyllaklakldlarcrtvsiEvGmQnsqLastllqlsfs.plsavpsaifpliyalfqlafallllkifva 310
                   +++++a  g+  ++ +++l+t  ++  L+l+mls+G+tl+ ++f  ++++P  vii +l  y++mPL++ +l+ +fklspe+  g+++vg+  GG+aSn+ t+++kG+vals++mTt  t+ a+ m+PLl +++ + +v+    v++ +i+ls +++vl P+++G+l ++++p+++k il   ++++v++++ l+a+++a++ e +++ +l l + v+ll+l+g   G++l k+++ d ++crt++iE+ m +s+ +++l++l+f+  l+ vpsa++++++a++++++a +++ i v+
  MMETSP1174-20130828|40922_1  41 LWTVLFAGAGIATPQSFAWLTTEYFTAgLALLMLSMGITLTPKDFADVAKNPASVIIQVLECYVMMPLLALGLGYAFKLSPEIIAGMVLVGSINGGQASNLCTFIAKGNVALSVVMTTATTVSAIFMTPLLCKVLLGAIVP----VNAVGIALStIQVVLGPILVGMLTNQFFPKFVKSILPySPIMGVLSTVFLVASAVAQVKEPILAAGLGLQMPVLLLHLLGGVFGFFLPKIMGFDETTCRTMAIETSMKSSAFGFLLAKLHFPaLLTRVPSAVSVVWMAVTGSTLAVIWKYIPVK 335
                  4578888899999********9888888*****************************************************************************************************************....********99***********************9999677888888999999999999999*************************************************************778999*******************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 1423.01
//
Query:       MMETSP1174-20130828|40933_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|40934_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1174-20130828|40962_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 247.48
//
Query:       MMETSP1174-20130828|40970_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 268.87
//
Query:       MMETSP1174-20130828|40987_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.0   0.0      0.031   11.9   0.0    1.0  1  TIGR03527 selenium_YedF: selenium metabolism protein YedF


Domain annotation for each model (and alignments):
>> TIGR03527  selenium_YedF: selenium metabolism protein YedF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.6e-06     0.031     109     150 ..       4      50 ..       2      53 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.6e-06
    TIGR03527 109 gFlktLkelds.....lpkkilflNsgvkLttegsevleeLkelekk 150
                  gF++++ e ++     +p+ + f+N+gv   +e++  +++L e++ k
  MMETSP1174-20130828|40987_1   4 GFIQAVVEVKTklgldTPQLVTFMNGGVATRIESEGYIQALVEVKTK 50 
                  7888888887522222699**********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 233.18
//
Query:       MMETSP1174-20130828|40991_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-12   43.0   0.0    1.3e-06   26.1   0.0    2.8  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.1e-10   1.3e-06       2      35 .]       3      36 ..       2      36 .. 0.96
   2 !   13.2   0.0     4e-06     0.017       3      34 ..      39      70 ..      37      71 .. 0.90
   3 ?    0.2   0.0     0.053   2.2e+02       1      10 [.      72      81 ..      72      81 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.1e-10
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkergivPda 35
                 ++++ is++ k +++  Alel++eM+++g+ P++
  MMETSP1174-20130828|40991_1  3 SFSAAISACEKTKQWQIALELLQEMRRNGVQPNV 36
                 8999****************************96 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 4e-06
    TIGR00756  3 yntlisglckagrveeAlelfdeMkergivPd 34
                  n+ is++ k  ++e Al+l+  M+  g++Pd
  MMETSP1174-20130828|40991_1 39 VNAAISACEKGEQWETALDLLTNMRIIGLEPD 70
                 6999********************98888888 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.053
    TIGR00756  1 vtyntlisgl 10
                 v++n+ is++
  MMETSP1174-20130828|40991_1 72 VSFNAAISAC 81
                 79*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1174-20130828|40995_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.8   6.6          3    4.8   4.6    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.6   0.00074         3      94     138 ..      11      54 ..       3      55 .] 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00074
    TIGR00601  94 aptptpsatpasvaekksaaPasaveeessaeeeatatalesedt 138
                   ++p+ ++  a +a  + +aPasa++++ +a+ + ++++  ++++
  MMETSP1174-20130828|40995_1  11 SAAPA-APAVACMAGGAPTAPASAMIPSRQATSADNSATSYPPSG 54 
                  23333.3566778888999************99999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1174-20130828|40997_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-59  197.8   0.9    8.8e-55  184.3   0.0    2.1  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.0   2.1e-58   8.8e-55      40     316 ..      63     345 ..      53     350 .. 0.87
   2 !   12.0   0.2   3.4e-06     0.014     453     497 ..     355     397 ..     349     409 .. 0.74

  Alignments for each domain:
  == domain 1    score: 184.3 bits;  conditional E-value: 2.1e-58
    TIGR01327  40 dydalivRSatkvteelleaaekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqad..........ksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaekl...gvellkdldellaeaDvitvHvP.ltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPptdnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlpald 316
                  d++a+++RS+     +l +     + ++R G G +N ++e+ t+ Gi v N+P +n  s+ El l  l+ ++R i +            + v++ + ++k f G E+ gktlGviGlG iG  v++ a algm+v +yDP +s + a +l   ++++++dl  l++e+D i++H+P l + t++li+++ +a+m++++ i+N aRG ++d +AL   l++g+ r+  +  f  E      + +++n ++ pHlgAst+Ea +n a   a+ ++++l++    ++vN p+++
  MMETSP1174-20130828|40997_1  63 DAHAILLRSHK---LQLTNVPFTCRAVARCGAGTNNCNVEEMTRLGIPVFNTPGANANSVKELVLCGLFLASRGIISGCnhmktlhadgTAVERVEKDKKMFGGREIAGKTLGVIGLGAIGAAVTDAALALGMNVKGYDPSLSVDAALRLpgkAMQKVDDLGALVSESDYISIHAPyLKDVTHHLIDASMIARMQPDASILNFARGELVDASALRAHLDAGHWRGSYVCDFPVEE-----MWDTPNSIIIPHLGASTNEAEDNSASMAADTIRSYLETGEIVNSVNFPTTK 345
                  67888888874...345555667899*******************************************999988654300000001013456678999**************************************************954457778888889************446679*******************************************9988886665.....89999*******************************************865 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.4e-06
    TIGR01327 453 lliiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmll 497
                   + i n++kpGv++ + +++g+ag+Ni++ ql  +++g+ a  ++
  MMETSP1174-20130828|40997_1 355 RINIVNENKPGVLAAIMNVFGDAGVNIQQ-QLN-TSRGDIAYNVI 397
                  5678899********************86.332.33344555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.47
# Mc/sec: 1319.89
//
Query:       MMETSP1174-20130828|41000_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 751.53
//
Query:       MMETSP1174-20130828|41017_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-08   29.5   1.3    0.00031   17.3   0.1    2.0  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.6e-06   23.4   0.3    3.5e-06   23.0   0.2    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.4e-06   23.5   0.4     0.0002   18.8   0.1    2.4  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0013   16.3   0.1     0.0034   14.9   0.0    1.7  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0026   15.6   0.0     0.0082   14.0   0.0    1.9  2  TIGR03504 FimV_Cterm: FimV C-terminal domain
     0.0037   15.7   0.2       0.16   10.4   0.0    2.4  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   4.6e-07   0.00031      88     153 ..      11      80 ..       3      86 .. 0.81
   2 !   11.3   0.1   2.9e-05      0.02     163     250 ..     121     207 ..     117     213 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.6e-07
    TIGR00990  88 aeekkstapkaaavesadelp....eidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyska 153
                  + e  + + ++  ve+++e+p    e+  ++++ l+  e+ +   +lk +Gn+ +++k f++ai  ys+ 
  MMETSP1174-20130828|41017_1  11 TREGVAAEVEQHGVETINENPirenEPPTKKRAPLTVAEKIAEGQNLKARGNELFKEKSFKNAILSYSRV 80 
                  555556666677788888887554477888999**********************************986 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.9e-05
    TIGR00990 163 ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakei 250
                  +sn+a c + l + +  +   ++ le +p + kal  +  ay qlg    a   lt  + i   ++  +++ + +l kkf ++ a+e+
  MMETSP1174-20130828|41017_1 121 WSNMAICCVKLEKPRDALVHLAKVLEKEPSHLKALINQGRAYMQLGDLDRAKTSLTEAAKISP-QNMLIQKELVKLKKKFGKQHAQEK 207
                  79**************999************************************99887765.778899999999999999999887 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   5.2e-09   3.5e-06     476     547 ..     129     200 ..     108     216 .. 0.49

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 5.2e-09
    TIGR02917 476 lgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkg 547
                  ++ +++  A   + k L+ ep +++Al+n+ r  +q +++d Ak  + ++ +i+p+n+ + ++L +l+++ g
  MMETSP1174-20130828|41017_1 129 VKLEKPRDALVHLAKVLEKEPSHLKALINQGRAYMQLGDLDRAKTSLTEAAKISPQNMLIQKELVKLKKKFG 200
                  334444444444444444444444444444444444444444444444444444444444444444444433 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0086       5.9     135     172 ..     118     155 ..     109     157 .. 0.89
   2 !   18.8   0.1     3e-07    0.0002     135     184 ..     152     201 ..     147     215 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0086
    TIGR02521 135 arsyeNaglcalkagdtekaekyltralkidpkrpesl 172
                   + ++N+++c  k+++   a   l + l+++p+  ++l
  MMETSP1174-20130828|41017_1 118 ISCWSNMAICCVKLEKPRDALVHLAKVLEKEPSHLKAL 155
                  5689**************************99987776 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3e-07
    TIGR02521 135 arsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgq 184
                   +++ N g  ++++gd ++a+++lt+a ki p++    +el++lk k g+
  MMETSP1174-20130828|41017_1 152 LKALINQGRAYMQLGDLDRAKTSLTEAAKISPQNMLIQKELVKLKKKFGK 201
                  57889999999999999999999999999999999999999999877665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         1   6.9e+02      66      81 ..      68      83 ..      63     105 .. 0.64
   2 !   14.9   0.0     5e-06    0.0034      54     120 ..     120     186 ..     113     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1
    TIGR02552 66 keyeeAiaaYalaaal 81
                 k +++Ai  Y++ +a 
  MMETSP1174-20130828|41017_1 68 KSFKNAILSYSRVFAY 83
                 5667777777776554 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 5e-06
    TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                   w  +a c+ +l++  +A+   a  +  ++++ +++   +  +++lg+  +A+  L  a++i+ ++ 
  MMETSP1174-20130828|41017_1 120 CWSNMAICCVKLEKPRDALVHLAKVLEKEPSHLKALINQGRAYMQLGDLDRAKTSLTEAAKISPQNM 186
                  68899*********************************************************99875 PP

>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.5   2.4e+03      18      28 ..     137     147 ..     128     153 .. 0.66
   2 !   14.0   0.0   1.2e-05    0.0082       3      26 ..     156     179 ..     154     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.5
    TIGR03504  18 ArelLeEViee 28 
                  A   L +V+e+
  MMETSP1174-20130828|41017_1 137 ALVHLAKVLEK 147
                  55667778876 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.2e-05
    TIGR03504   3 LDLAkaYiemGDkegArelLeEVi 26 
                  +++ +aY+++GD++ A++ L E +
  MMETSP1174-20130828|41017_1 156 INQGRAYMQLGDLDRAKTSLTEAA 179
                  56779***************9976 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.05        34      45      67 ..      60      82 ..      54      93 .. 0.80
   2 !   10.4   0.0   0.00023      0.16      51     107 ..     130     183 ..     124     195 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.05
    TIGR02795 45 lGealyakkkykdAakaflevvk 67
                 +G+ l+++k +k+A+ +++ v++
  MMETSP1174-20130828|41017_1 60 RGNELFKEKSFKNAILSYSRVFA 82
                 57888889999999999988876 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00023
    TIGR02795  51 akkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYP 107
                  + +k +dA  + ++v++k p++ k   al+++g+++ +lg+ + Ak+ l+e +k  P
  MMETSP1174-20130828|41017_1 130 KLEKPRDALVHLAKVLEKEPSHLK---ALINQGRAYMQLGDLDRAKTSLTEAAKISP 183
                  567788999999999999999887...6*********************99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1060.80
//
Query:       MMETSP1174-20130828|41043_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   13.1   2.0       0.01   12.9   1.4    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.4   2.5e-06      0.01      80     186 ..      28     126 ..       6     131 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.5e-06
    TIGR03752  80 keNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdr 186
                  ++ ++l  + ++ ++  e++d  ++++l++ k+e++k+++ql+ ++++l+e++  l   le+v++e+e+  e +p+    ++++k+ + s ++v  v+  d+ + + 
  MMETSP1174-20130828|41043_1  28 HNLQQLAGKLDKFQH--EKIDGIVTSTLQSGKEEARKQRKQLNGDVDTLRERVLLL---LEKVNNESEALTEAMPLI--NSTRGKEDH-SLQSVSVVQHLDQLQGEY 126
                  333444444455444..59****************************999986655...667778888888888854..333333333.467788887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 458.49
//
Query:       MMETSP1174-20130828|41059_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 286.60
//
Query:       MMETSP1174-20130828|41124_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 187.83
//
Query:       MMETSP1174-20130828|41145_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-36  123.0   1.6    2.8e-36  122.9   1.1    1.1  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    2.4e-13   48.0   8.8    1.1e-10   39.3   4.6    2.1  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    1.3e-12   45.7   1.7    1.9e-12   45.1   1.2    1.2  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    1.2e-06   26.4   3.0    4.3e-05   21.3   0.3    2.4  2  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
    3.1e-06   23.6   3.7    3.2e-06   23.6   1.3    1.7  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    9.8e-06   22.5   7.0      2e-05   21.5   3.8    1.9  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    0.00027   18.8   6.6      0.078   10.8   0.0    2.6  2  TIGR01172 cysE: serine O-acetyltransferase
    0.00037   17.3   2.6      0.013   12.1   0.2    2.1  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00064   16.9   6.5     0.0012   16.0   4.5    1.5  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
     0.0028   14.4   3.9       0.35    7.5   0.9    2.2  3  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0041   14.1   0.5     0.0069   13.3   0.2    1.5  1  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
  ------ inclusion threshold ------
       0.28    8.4   4.9        0.6    7.3   3.4    1.5  1  TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
       0.31    8.5   6.5        0.7    7.3   3.5    2.1  2  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   1.1   8.9e-39   2.8e-36       7     168 ..      54     215 ..      48     217 .] 0.96

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 8.9e-39
    TIGR02287   7 ltpvvheeayvhpsavligdvivgkrvyvgplaslrgdfgrivlkeganvqdtcvmhgfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrelseqelawkkegtreyqdlaarslqtl 168
                    p v++ a+v psa +ig+v + ++  v   a lrgdf  i +   +n+qd  vm+   ++ t v+ n  +ghga+l gc++g ++l+gm +v+ + a + +++ivaa a v ag+ +++++l +g pa  +r+l+e+ela     ++ y  la+    tl
  MMETSP1174-20130828|41145_1  54 TVPDVEKAAFVAPSAAVIGNVTMEEKSSVWYGAVLRGDFNSISVGASTNIQDLVVMKTTAENGTSVGSNVTIGHGALLTGCTIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGAVVPSKQLWAGRPASYIRDLTEKELANFDGHAESYCALASEHDATL 215
                  56899*****************************************************************************************************************************************99999999999998877776 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00055      0.17     138     171 ..      58      91 ..      50     101 .. 0.79
   2 !   39.3   4.6   3.3e-13   1.1e-10     113     201 ..      96     183 ..      92     184 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00055
    TIGR03570 138 igdfvhiapgatlsGgvkigegvfiGagAtviqg 171
                  +++ + +ap+a++ G+v+ +e++ +  gA+++ +
  MMETSP1174-20130828|41145_1  58 VEKAAFVAPSAAVIGNVTMEEKSSVWYGAVLRGD 91 
                  6778888999999999999999988888887754 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 3.3e-13
    TIGR03570 113 vinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvkd..ipenavvvGvPa 201
                   + a+++i+d v+ +t  + e  + +g++v+i  ga l+G ++ig++++iG+ +++ +  t++++a+v aGavV +   +p++++++G Pa
  MMETSP1174-20130828|41145_1  96 SVGASTNIQDLVVMKT--TAENGTSVGSNVTIGHGALLTG-CTIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGavVPSKQLWAGRPA 183
                  4667777888777766..55999*************9998.89*******************************864349**********9 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   1.2   6.1e-15   1.9e-12      86     218 ..      61     193 ..      34     200 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.1e-15
    TIGR03532  86 nariepGaiirdkvaigdnavimmGav.......iniGaeiGegtmidmnavlGgraivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaivied..vpentvvaGvpakvikevdekt 218
                   a + p a +  +v++++++ +  Gav       i +Ga    + ++ m+++    + vG nv iG Ga+l+G         ++i d+ liG  +vi e  +v + a+vaaGa+v     vp++ + aG pa  i+++ ek 
  MMETSP1174-20130828|41145_1  61 AAFVAPSAAVIGNVTMEEKSSVWYGAVlrgdfnsISVGASTNIQDLVVMKTTAENGTSVGSNVTIGHGALLTG---------CTIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGavVPSKQLWAGRPASYIRDLTEKE 193
                  578999**99****************94444444567888888888889999999999*************99.........79*******************************86433999**************99986 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   3.5e-05     0.011     102     142 ..     110     149 ..      92     151 .. 0.83
   2 !   21.3   0.3   1.4e-07   4.3e-05     110     169 ..     135     196 ..     132     200 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.5e-05
    TIGR03308 102 aarkakrvtiGhdvWiGhGavilPgvtiGnGavvaagavvt 142
                  ++  ++   +G +v iGhGa+ l g tiG+  +++ ++v+ 
  MMETSP1174-20130828|41145_1 110 KTTAENGTSVGSNVTIGHGAL-LTGCTIGDQCLIGMSSVIG 149
                  5556667889**********7.579************9985 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.4e-07
    TIGR03308 110 tiGhdvWiGhGavilPgvtiGnGavvaagavvtkd..vasytivaGvpaklirrrfaeeiae 169
                  tiG    iG  +vi    t+ n a+vaagavv     v+s  + aG pa+ ir    +e+a+
  MMETSP1174-20130828|41145_1 135 TIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGavVPSKQLWAGRPASYIRDLTEKELAN 196
                  7999999999999999999999999999999975333899*************988888775 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.31        97     647     672 ..      57      82 ..      42      92 .. 0.75
   2 !   23.6   1.3     1e-08   3.2e-06     151     213 ..     125     186 ..      93     201 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.31
    TIGR02353 647 tigdgatlgpsaivlygavvgedavl 672
                   + + a ++psa+v  +++++e++ +
  MMETSP1174-20130828|41145_1  57 DVEKAAFVAPSAAVIGNVTMEEKSSV 82 
                  37788899999999999999998876 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1e-08
    TIGR02353 151 vergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkv 213
                  +  g l +G  ++gd+ ++G  sv+   +++ ++a ++a+  ++ g ++p+ + WaG PA  +
  MMETSP1174-20130828|41145_1 125 IGHGALLTG-CTIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGAVVPSKQLWAGRPASYI 186
                  445556565.47888888888888888888888888888888888888888888888888766 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1       0.1        33     113     138 ..      64      89 ..      40     113 .. 0.43
   2 !   21.5   3.8   6.5e-08     2e-05     109     173 ..      99     166 ..      91     177 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.1
    TIGR01853 113 igpnvviganveiGenvkIgpgvvig 138
                  ++p + +  nv++ e++ +  g+v+ 
  MMETSP1174-20130828|41145_1  64 VAPSAAVIGNVTMEEKSSVWYGAVLR 89 
                  33333333333333333333333322 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 6.5e-08
    TIGR01853 109 eeveigpnvvi....ganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagavi 173
                  ++ +i++ vv+    ++++++G+nv Ig g+++  +++igd++ i    vi e+++++++ i+ agav+
  MMETSP1174-20130828|41145_1  99 ASTNIQDLVVMkttaENGTSVGSNVTIGHGALL-TGCTIGDQCLIGMSSVIGEAATVENQAIVAAGAVV 166
                  444555554441111455667777777776655.46777777777777777777777777777777776 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00025     0.078     107     150 ..      49      92 ..      22     104 .. 0.82
   2 !    7.4   3.2    0.0029      0.92      94     145 ..     117     165 ..     103     184 .. 0.44

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00025
    TIGR01172 107 kekgkRhPtvkegvvigagakvLGnievgenakiGansvvlkdv 150
                  ++  +  P+v++ + ++ +a v+Gn+++ e++++  ++v   d 
  MMETSP1174-20130828|41145_1  49 MSIYDTVPDVEKAAFVAPSAAVIGNVTMEEKSSVWYGAVLRGDF 92 
                  5555778***************************9999987665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0029
    TIGR01172  94 vsiyqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGansv 145
                  +s+  +vt+G     +g    t++++ +ig ++ +  + +v ++a + a++v
  MMETSP1174-20130828|41145_1 117 TSVGSNVTIGHGALLTG---CTIGDQCLIGMSSVIGEAATVENQAIVAAGAV 165
                  33333333333333322...23444444443333333333333344444444 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1      0.01       3.2     257     321 ..      69     129 ..      39     133 .. 0.74
   2 !   12.1   0.2   4.2e-05     0.013     393     439 ..     135     183 ..     132     194 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.01
    TIGR01173 257 vllekdveigqdvviepnvilegkvkigedvviGagsvikdsaikenakikaysvlekseigega 321
                   ++ ++v++++   +  +++l+g+    + + +Ga + i+d ++ +++  + +sv ++ +ig+ga
  MMETSP1174-20130828|41145_1  69 AVI-GNVTMEEKSSVWYGAVLRGD---FNSISVGASTNIQDLVVMKTTAENGTSVGSNVTIGHGA 129
                  333.56777777777777888887...56778888888888888887777777777777777655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.2e-05
    TIGR01173 393 vigddvfiGsdsqlvaPvkvgdgatiaaGstvtkd..vpegaLalsrar 439
                  +igd+  iG  s++    +v+++a++aaG++v+    vp+++L  +r+ 
  MMETSP1174-20130828|41145_1 135 TIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGavVPSKQLWAGRPA 183
                  79******************************97544899999888865 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.5   3.9e-06    0.0012      71     152 ..      89     166 ..      50     180 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.9e-06
    TIGR01852  71 kgekteleiGdnntirEfvtinrgtkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiigglvav 152
                  +g+  ++ +G ++ i++ v ++++ ++g   ts+G+n+ +   + +   c++g+++ ++  + ++   +v++ ai+++ + v
  MMETSP1174-20130828|41145_1  89 RGDFNSISVGASTNIQDLVVMKTTAENG---TSVGSNVTIGHGA-LLTGCTIGDQCLIGMSSVIGEAATVENQAIVAAGAVV 166
                  45556899**************999998...****998765554.5568999999999999999999999999999887765 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0012      0.37     251     308 ..      58     112 ..      43     115 .. 0.90
   2 !    7.5   0.9    0.0011      0.35     252     302 ..     114     163 ..     110     174 .. 0.51
   3 ?    3.9   0.1     0.014       4.4     239     282 ..     148     187 ..     138     191 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
    TIGR03992 251 veegavvrsgayieGpvligknaeiGPnayiRpatvigedvkvgnaveiKnsiimeet 308
                  ve+ a v   a + G v++++++++   a +R+     ++++vg++++i++ ++m+ t
  MMETSP1174-20130828|41145_1  58 VEKAAFVAPSAAVIGNVTMEEKSSVWYGAVLRGD---FNSISVGASTNIQDLVVMKTT 112
                  8999*****************************8...6899**************988 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0011
    TIGR03992 252 eegavvrsgayieGpvligknaeiGPnayiRpatvigedvkvgnaveiKns 302
                  e+g+ v s++ i   +l  ++++iG ++ i  ++vige ++v n++ + + 
  MMETSP1174-20130828|41145_1 114 ENGTSVGSNVTIGHGAL-LTGCTIGDQCLIGMSSVIGEAATVENQAIVAAG 163
                  45555555555533333.355666666666666666666555555444433 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.014
    TIGR03992 239 veenvklkgevvveegavvrsgayieGpvligknaeiG.PnayiR 282
                  + e ++++ + +v+ gavv++ga++       k+   G P +yiR
  MMETSP1174-20130828|41145_1 148 IGEAATVENQAIVAAGAVVEAGAVV-----PSKQLWAGrPASYIR 187
                  4455555555555555555555544.....333334444566666 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   2.2e-05    0.0069     297     363 ..      79     149 ..      35     150 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.2e-05
    TIGR02091 297 dslvaegcvisgatvenSvlgervriesesevedsvvlge...........vkigenakikkaiidknvrigegvkig 363
                  +s v  g+v++g        ++++ ++++++++d vv+++           v+ig++a ++ + i  ++ ig   +ig
  MMETSP1174-20130828|41145_1  79 KSSVWYGAVLRG-------DFNSISVGASTNIQDLVVMKTtaengtsvgsnVTIGHGALLTGCTIGDQCLIGMSSVIG 149
                  233333333333.......26778899999999999999999999888888999999999999999999999887776 PP

>> TIGR00965  dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.4    0.0019       0.6     126     210 ..      95     170 ..      45     211 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0019
    TIGR00965 126 vnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqakpviiedncfigarseivegviveegsvismgvfigqst 210
                  + +ga  +   +v   +t    + +g nv +  g+ + g           i d+c+ig  s i e   ve+ ++++ g  +   +
  MMETSP1174-20130828|41145_1  95 ISVGASTNIQDLVVMKTTAENGTSVGSNVTIGHGALLTGC---------TIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAGA 170
                  4556665555555555666666666666666665555543.........466777777777777777777766666666554433 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.29        91     101     125 ..      64      88 ..       3     109 .. 0.68
   2 ?    7.3   3.5    0.0022       0.7      70     137 ..     113     180 ..      85     186 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.29
    TIGR04016 101 lganvillgditignnvtigagsvv 125
                  +     ++g++t+ ++ ++  g+v+
  MMETSP1174-20130828|41145_1  64 VAPSAAVIGNVTMEEKSSVWYGAVL 88 
                  4444556677777766666666654 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0022
    TIGR04016  70 agddftirhgvtignrgadslacpvigngvelganvillgditignnvtigagsvvld..sipdnalvvg 137
                  a +  ++   vtig  g + l+  +ig++  +g   ++    t+ n+  + ag+vv     +p + l  g
  MMETSP1174-20130828|41145_1 113 AENGTSVGSNVTIGH-G-ALLTGCTIGDQCLIGMSSVIGEAATVENQAIVAAGAVVEAgaVVPSKQLWAG 180
                  445556777788885.4.4566668999999999999888889999999999999864214666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.45
# Mc/sec: 636.48
//
Query:       MMETSP1174-20130828|41148_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1465.08
//
Query:       MMETSP1174-20130828|41178_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 313.92
//
Query:       MMETSP1174-20130828|41179_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 234.65
//
Query:       MMETSP1174-20130828|41244_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1174-20130828|41361_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 217.14
//
Query:       MMETSP1174-20130828|41370_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|41392_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 491.55
//
Query:       MMETSP1174-20130828|41399_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-24   83.8   0.0    2.5e-24   83.7   0.0    1.0  1  TIGR00505 ribA: GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   6.1e-28   2.5e-24      68     133 ..       1      66 [.       1      67 [] 0.97

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 6.1e-28
    TIGR00505  68 leralkliakegkGviiylrqeGrgiGlinklkayalqdkGadtveanlelgfkaderdfslaaei 133
                  le+al +i + g+G i+yl qeGrgiGl nk+ ay lqd+G+dtvean++lgf++++r +++ a +
  MMETSP1174-20130828|41399_1   1 LEMALAQIMNVGRGAIVYLPQEGRGIGLANKIAAYGLQDQGMDTVEANVHLGFPEEARVYDIVAPL 66 
                  799**********************************************************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 353.73
//
Query:       MMETSP1174-20130828|41401_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 596.82
//
Query:       MMETSP1174-20130828|41517_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1174-20130828|41552_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 571.95
//
Query:       MMETSP1174-20130828|41554_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1174-20130828|41558_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1174-20130828|41603_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 325.26
//
Query:       MMETSP1174-20130828|41625_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1174-20130828|41634_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1214.30
//
Query:       MMETSP1174-20130828|41655_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   13.0   0.0     0.0048   12.9   0.0    1.0  1  TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
  ------ inclusion threshold ------
      0.011   13.8   0.0      0.018   13.2   0.0    1.3  1  TIGR02979 phageshock_pspD: phage shock protein PspD
      0.033   11.9   0.0      0.051   11.3   0.0    1.3  1  TIGR02383 Hfq: RNA chaperone Hfq


Domain annotation for each model (and alignments):
>> TIGR03938  deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.5e-06    0.0048     178     252 ..      11      87 ..       2      95 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.5e-06
    TIGR03938 178 ekRirkDlkksaelikkktgkaprvlvWPYgaynekaleiakklGmkvaltLed..gvntvdkslaelrRlLvenev 252
                  + Ri+k +++ ++li + ++++ r+ +W Y++ n + +         ++l L+d  +++++++   +l R+L++ ++
  MMETSP1174-20130828|41655_1  11 NTRIKKVMTQPINLIFRFLQNRTRIAIWLYENSNISIEGRIVGFDEYMNLVLDDaqEIDDKKETRVDLGRILLKGDT 87 
                  68*****************************99988766554444445555665115556666777889***99876 PP

>> TIGR02979  phageshock_pspD: phage shock protein PspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.018      18      40 ..       4      26 ..       2      31 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-05
    TIGR02979 18 YGPAGvAgvavKsvarrPLkmLL 40
                 YGP G+A   +K v  +P+ ++ 
  MMETSP1174-20130828|41655_1  4 YGPGGAANTRIKKVMTQPINLIF 26
                 ******************98875 PP

>> TIGR02383  Hfq: RNA chaperone Hfq
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.7e-05     0.051      13      45 ..      30      64 ..      23      68 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
    TIGR02383 13 kekievtvfLv..nGvklkGviesfDkFtvllese 45
                 ++++ ++++L   + + ++G+i+ fD+++ l+ ++
  MMETSP1174-20130828|41655_1 30 QNRTRIAIWLYenSNISIEGRIVGFDEYMNLVLDD 64
                 788999999973246899**********8766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 446.03
//
Query:       MMETSP1174-20130828|41660_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-102  339.8   0.0   5.6e-102  339.5   0.0    1.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    9.3e-76  252.8   0.0    1.2e-75  252.5   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
    4.4e-72  240.7   0.0    5.8e-72  240.3   0.0    1.1  1  TIGR01139 cysK: cysteine synthase A
    1.7e-65  218.9   0.0    3.1e-65  218.0   0.0    1.4  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
      3e-58  195.5   0.0    1.3e-57  193.4   0.0    1.8  1  TIGR01138 cysM: cysteine synthase B
    3.4e-13   46.8   0.0    4.9e-13   46.3   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.6e-11   41.8   0.3    2.1e-10   38.1   0.2    2.1  1  TIGR00260 thrC: threonine synthase
    1.7e-10   38.1   0.0    2.4e-10   37.6   0.0    1.2  1  TIGR02079 THD1: threonine dehydratase
      6e-10   36.4   0.0    1.2e-09   35.5   0.0    1.3  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    3.9e-09   33.8   0.0      5e-09   33.4   0.0    1.2  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    0.00065   16.4   0.0     0.0012   15.6   0.0    1.3  1  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   0.0  1.5e-104  5.6e-102       5     325 ..     222     547 ..     219     550 .] 0.95

  Alignments for each domain:
  == domain 1    score: 339.5 bits;  conditional E-value: 1.5e-104
    TIGR01137   5 ildliGntPlvrlnkvsk..glka..evlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklk.ekedkvrivGadPeGsilaepeelnkte.ktdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkflndeWlkdkgflddes 325
                   +++iG tPlv l +++   +l++  +++ k+ef+n+G s+kdria +++++ae+ G+++pg+t++   sGnt   +a+ +a +Gyk++++   k s+ekv  l a+Ga  ++t + + +d+Pe y +v +rl+ e pg + ++qy+n+ nP+a+y+t ++ei++q egk++++ a++ tGGtitGi+ +lk + +++vr++  dP Gsi+++  e  + +   +++veG+G+d iP++++ +++de+    dkesf+m+r l+++egl++gGs+G  v aal+va+ +l+    +v + pds+ +yl+k+ nd W++++gf +d +
  MMETSP1174-20130828|41660_1 222 FVSNIGATPLVELTSLATlnNLRPdvKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTRAGVPPDHPEHYQNVEDRLVAENPGWFGVNQYDNPLNPEAYYHTLAPEIWAQSEGKVTHFFAAASTGGTITGIGTYLKeKTNGAVRVISPDPVGSIFSNFWETGEVGpCKSFEVEGVGKDSIPKAMNFDIIDEMPSYTDKESFQMCRLLAAKEGLVCGGSTGLNVHAALEVAK-TLDGPATLVCVAPDSGIKYLSKIYNDTWMASNGFSSDTV 547
                  5789************99888877225678******************************************************************************************************************************************************************556889**************9877777662347**************************************************************.77777899**************************98865 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.5   0.0   3.3e-78   1.2e-75       3     296 ..     224     530 ..     222     532 .. 0.90

  Alignments for each domain:
  == domain 1    score: 252.5 bits;  conditional E-value: 3.3e-78
    TIGR01136   3 eliGntPlvrln.lseelk....aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteae...egmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkp.nvkivavePaespv...lsegkpgp...hkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLst 296
                  + iG tPlv+l  l++ ++    +++++K+E++nP++S+KdRia +++++Ae++g++++g t++ a SGNt  a+Am +aa+gyk +++   + s E+ ++l+ayGa+ ++t a    +  +   +  + l++e+p  ++ ++q++Np Npea ++t +pEi+++ +gk+++f a+  tgGtitG+g +lkek++  v++++ +P  s       +g+ gp    +++g+g++ iPk ++ +++de+ + +d++++++ r la++eg+++G S+G +v+aal+vak+l+   +++v+++pd+g +YLs 
  MMETSP1174-20130828|41660_1 224 SNIGATPLVELTsLATLNNlrpdVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTRAGvppDHPEHYQNVEDRLVAENP-GWFGVNQYDNPLNPEAYYHTLAPEIWAQSEGKVTHFFAAASTGGTITGIGTYLKEKTNgAVRVISPDPVGSIFsnfWETGEVGPcksFEVEGVGKDSIPKAMNFDIIDEMPSYTDKESFQMCRLLAAKEGLVCGGSTGLNVHAALEVAKTLDG-PATLVCVAPDSGIKYLSK 530
                  579*********87666557788*****************************************************************************************986221333444445556788877.888***************************************************998779********9876511144556666222579*************************************************************95.69**************95 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.0   1.6e-74   5.8e-72       4     295 ..     225     530 ..     222     532 .. 0.89

  Alignments for each domain:
  == domain 1    score: 240.3 bits;  conditional E-value: 1.6e-74
    TIGR01139   4 liGntPlvrLn.laeea....kaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgae..gmkgaieka.eelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkp.dikvvavePaes...pvlsggkpgphk...iqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtgerYlst 295
                   iG tPlv+L  la+ +    ++++++k+e++nP++s+kdria +++++ae++g++++g t+v a sGnt  a+am +aargyk++++   + s e+ + l+ayGa+ ++t +          ++  + lv+e+p  ++ ++q++np npe++ +t apei+ + +gk+ +f a+  tGGtitG+g +lkek++  ++v++ +P+ s   +    g+ gp k   + G+g + iPk ++ ++ide+ + +d e+++++r la++eG++ G s+G +v aal+vak l+  +++v+++pd+g +Yls 
  MMETSP1174-20130828|41660_1 225 NIGATPLVELTsLATLNnlrpDVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTRAGVppDHPEHYQNVeDRLVAENP-GWFGVNQYDNPLNPEAYYHTLAPEIWAQSEGKVTHFFAAASTGGTITGIGTYLKEKTNgAVRVISPDPVGSifsNFWETGEVGPCKsfeVEGVGKDSIPKAMNFDIIDEMPSYTDKESFQMCRLLAAKEGLVCGGSTGLNVHAALEVAKTLDGPATLVCVAPDSGIKYLSK 530
                  79*******997443331122689***************************************************************************************986511334445554156999999.888****************************************************99879********9862214555667776543339**************************************************************9****************95 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.8     1e+03     159     190 ..     123     155 ..     120     160 .. 0.82
   2 !  218.0   0.0   8.4e-68   3.1e-65       4     304 .]     225     537 ..     222     537 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.8
    TIGR03945 159 eileelk.evdylfvgvsttGtlaGvarrlrek 190
                  +i+++l  +    f +  t+G + G a++l ++
  MMETSP1174-20130828|41660_1 123 AIVTALAlHAAAAFTPYHTSGNIPGRANYLSRA 155
                  67888888888899999999**99999999765 PP

  == domain 2    score: 218.0 bits;  conditional E-value: 8.4e-68
    TIGR03945   4 ligntplvkleklfede....kvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlreksp.evkvvavDavGSvi..fg.....gepgkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldtvYddeWv 304
                   ig+tplv+l++l + +    +v++f+K+E +np++S+Kdr A ++l++a+++g+i+pg t++  sSGn a a+am+caa+G+k ++++ +k+s+++++ l a+ga+  +v++     ++ +   +   +l+ae p  + +NQY n+ n+ea+y+t a ei ++ + +v ++f+++st+Gt++G+  +l+ek+   v+v++ D vGS+   f      g+ ++ ++ G+G    p+ ++ + ide+ + ++ e++++cr l+++eg++ GgS+G  v a+ ++++++   +t v+++pD G +Yl+ +Y+d+W+
  MMETSP1174-20130828|41660_1 225 NIGATPLVELTSLATLNnlrpDVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKA-IVTRAGVPPDHPEHYQNVEDRLVAENPGWFGVNQYDNPLNPEAYYHTLAPEIWAQSEgKVTHFFAAASTGGTITGIGTYLKEKTNgAVRVISPDPVGSIFsnFWetgevGPCKSFEVEGVGKDSIPKAMNFDIIDEMPSYTDKESFQMCRLLAAKEGLVCGGSTGLNVHAALEVAKTLDGPATLVCVAPDSGIKYLSKIYNDTWM 537
                  577888888888766441122578**********************************************************************************95.5666666666655555555789***********************************9***********************9865279**********973332222223456689****************************************************************************************6 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.0   3.4e-60   1.3e-57       5     287 ..     225     530 ..     222     532 .. 0.87

  Alignments for each domain:
  == domain 1    score: 193.4 bits;  conditional E-value: 3.4e-60
    TIGR01138   5 lvGntplvrlkrllpe....edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvd...keeGmeGardlarelvrkgeek.lldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeq.npavqivGlqpa........egsaieGlrrie.....seylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdrylst 287
                   +G tplv l  l++      d+++++k e  np+ s+kdr a  ++ eae+ G+i++G +++ a+sGnt  a+am++a++Gyk  ++     s+e+ aal+ayGa+ i++    + +  e  +++ ++lv + ++   ++q++np np+a+y++  +eiw q++G++thf ++  t+Gti+G++ +lke+ n av+++   p         e+ ++   + +e     ++  p+  +  ++d++     +++ ++ r la keg+ +G s+G  v aal++a+ l+  a +v++ +d G +yls 
  MMETSP1174-20130828|41660_1 225 NIGATPLVELTSLATLnnlrPDVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTRagvPPDHPEHYQNVEDRLVAENPGWfGVNQYDNPLNPEAYYHTLAPEIWAQSEGKVTHFFAAASTGGTITGIGTYLKEKtNGAVRVISPDPVgsifsnfwETGEVGPCKSFEvegvgKDSIPKAMNFDIIDEMPSYTDKESFQMCRLLAAKEGLVCGGSTGLNVHAALEVAKTLDGpATLVCVAPDSGIKYLSK 530
                  69********9998754466799**************************************************************************************9972224567788899999********9679*************************************************973779***98777522221111222233344444111115689*****************************************************9889**************85 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   1.3e-15   4.9e-13      19     201 ..     230     427 ..     223     442 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 1.3e-15
    TIGR01124  19 plekaaklse....rlknrvllkredlqpvfsfklrGaynkmaqlsaeqkak...GviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlh..Genyde..akakale..laqekgltfiapfddplv.iaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkq.llpeikvigvea 201
                  pl + ++l++    r + +++lk e ++p +s k r a   + +  +  k +    v+aas+Gn a   a+ ++  G kav++  +  ++ kv a+ a+G++ ++   G   d+   ++++ +  +a++ g   ++ +d+pl   a   t+a e+  q+e ++++ f +   GG i+G+ +++k+     ++vi+ ++
  MMETSP1174-20130828|41660_1 230 PLVELTSLATlnnlRPDVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQpggTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTraGVPPDHpeHYQNVEDrlVAENPGWFGVNQYDNPLNpEAYYHTLAPEIWAQSEGKVTHFFAAASTGGTITGIGTYLKEkTNGAVRVISPDP 427
                  5544444432111266789*******************9988777665554322269********************************************988752244333300333332221466778888*******97368899***********************************72456799998766 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   5.5e-13   2.1e-10      33     127 ..     241     333 ..     222     523 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 5.5e-13
    TIGR00260  33 eevga.enlyvkelfhgPtlaFKDrglqfvavlltkalelgne....tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispvkeklvtalaenakvl 127
                  +++    ++++k +f++P  + KDr       +l++a   g+     tv+ A+sG+t+aa a +l +  + k+vv+  + k s   ek++   a++ak +
  MMETSP1174-20130828|41660_1 241 NNLRPdVKIFLKCEFMNPGNSIKDRI---AEHILNEAERTGKIqpggTVVAASSGNTAAAFA-MLCAARGYKAVVITNT-KCS--DEKVAALTAYGAKAI 333
                  555555688****************9...66667777777776999****************.***********99865.599..9*********99976 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   6.5e-13   2.4e-10      17     214 ..     229     435 ..     221     527 .. 0.69

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 6.5e-13
    TIGR02079  17 tPlqknerlse....kykaeiylkredlqevrsyklrGaynkl...kqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfd..eaaaaa.kk.avekegktlipPfddkdiieG.qgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapslkasl 214
                  tPl + + l+     + +++i+lk e ++   s k r a + l   ++  + +   +vv as+Gn a  +a  c + g k++v   ++    kv  +  +G + i  +  G   d  e +++   +  +e+ g   ++ +d++   e    t+a ei  q e  k+   +++   GG i+G+++ylkek++  ++  + P+   s+ + +
  MMETSP1174-20130828|41660_1 229 TPLVELTSLATlnnlRPDVKIFLKCEFMNPGNSIKDRIAEHILneaERTGKIQPGGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTR-AGVPPDhpEHYQNVeDRlVAENPGWFGVNQYDNPLNPEAyYHTLAPEIWAQSEG-KVTHFFAAASTGGTITGIGTYLKEKTNG-AVRVISPDPVGSIFSNF 435
                  66665555554111145789*****************99888822244555566678*********************************************999655.3433331133333303314555566779*****977765268********9887.79*********************99764.34444555444554444 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.1e-12   1.2e-09      11     198 ..     220     423 ..     215     431 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.1e-12
    TIGR02991  11 eriagrveetplveseslsell....GvpvllklesrqttGsfklrGatnavlslsdaera...aGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevri..vGrsqd..daqeev.erlvker.Glvmlppfdha.divaGqGtlglevveqvp.dlalvlvplsGGGlasGvavavkal.kpatrvi 198
                   r  +++  tplve +sl+ l      v++ lk e  ++  s k r a   +   + + +      vvaas+Gn   a+a   ++ g +av+   +    +kv ++  +Ga+  +   G   d  +  ++v +rlv+e+ G   +  +d++ +  a   tl+ e+ +q   ++   +   s GG ++G+++ +k + + a+rvi
  MMETSP1174-20130828|41660_1 220 GRFVSNIGATPLVELTSLATLNnlrpDVKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIqpgGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVtrAGVPPDhpEHYQNVeDRLVAENpGWFGVNQYDNPlNPEAYYHTLAPEIWAQSEgKVTHFFAAASTGGTITGIGTYLKEKtNGAVRVI 423
                  5888999*********999865222257899*****************9888877766654111569*******************************************98543113444442244455527***98669*********94567999*******99975268889999**************97525677887 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.3e-11     5e-09      15     180 ..     247     424 ..     229     532 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.3e-11
    TIGR01127  15 aevylklenlqktGsfkirGalnkiaklseeekkr.G..vvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLh..Ga..dfDeayklaee..laeeegrvfvhafdDefv.iaGqGtlgleiled.lpdvdtvivPvGGGGLisGvasavkkl.npevkviG 180
                   +++lk e +    s k r a + ++++   +k + G  vvaas+Gn a   a+     g ka+++    +  +kv a  +yGa+ i+   G   d+ e y+  e+  +ae+ g   v+ +d++    a   tl+ ei ++  ++v    +    GG i+G+ + +k++ n  v+vi 
  MMETSP1174-20130828|41660_1 247 VKIFLKCEFMNPGNSIKDRIAEHILNEAERTGKIQpGgtVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDEKVAALTAYGAKAIVTraGVppDHPEHYQNVEDrlVAENPGWFGVNQYDNPLNpEAYYHTLAPEIWAQsEGKVTHFFAAASTGGTITGIGTYLKEKtNGAVRVIS 424
                  57999***999999*****999888888777664332349*********************************************9986224422344666655543245556677799**99975268899******8772589*********************97526789*996 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-06    0.0012     117     154 ..     283     320 ..     259     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.1e-06
    TIGR03844 117 kkvlvvasaGntgrafaevsaltgkpvvlvvPesavdr 154
                  ++++v as+Gnt+ afa ++a  g+  v++  ++  d 
  MMETSP1174-20130828|41660_1 283 GGTVVAASSGNTAAAFAMLCAARGYKAVVITNTKCSDE 320
                  678999******************99998877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.54
# Mc/sec: 1344.33
//
Query:       MMETSP1174-20130828|41665_1  [L=1127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-284  941.5   5.1   2.1e-283  940.4   3.6    1.5  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.2e-34  116.5   0.0    3.9e-34  114.8   0.0    1.9  2  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
    2.4e-25   87.1   0.0      6e-24   82.4   0.0    2.5  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    9.9e-21   72.0   0.2    1.6e-20   71.4   0.1    1.2  1  TIGR02053 MerA: mercuric reductase
    3.7e-20   69.9   0.3    6.4e-20   69.1   0.2    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    4.6e-17   60.1   0.1    8.3e-17   59.2   0.1    1.3  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    2.9e-12   44.0   0.0    6.1e-12   43.0   0.0    1.4  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
      5e-11   40.4   0.0    1.8e-10   38.6   0.0    1.9  1  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
    5.2e-11   39.8   0.1    8.5e-11   39.1   0.0    1.2  1  TIGR02064 dsrA: sulfite reductase, dissimilatory-type alpha subunit
    1.1e-09   35.5   0.1    2.3e-09   34.4   0.1    1.5  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.3e-08   30.9   0.3    4.2e-08   30.0   0.2    1.3  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    6.4e-08   29.4   0.3    1.2e-07   28.5   0.2    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    8.1e-08   29.4   0.3    1.4e-07   28.6   0.2    1.3  1  TIGR03452 mycothione_red: mycothione reductase
    8.2e-08   29.7   0.0    1.3e-07   29.0   0.0    1.2  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    1.5e-05   21.8   0.0    2.6e-05   21.0   0.0    1.3  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    5.4e-05   20.2   0.0    8.3e-05   19.5   0.0    1.3  1  TIGR02435 CobG: precorrin-3B synthase
    0.00011   18.7   0.1     0.0059   13.0   0.0    2.1  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    0.00015   18.7   0.0    0.00035   17.5   0.0    1.5  2  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
    0.00096   16.5   3.3     0.0092   13.2   0.7    2.2  2  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
     0.0077   12.5   0.1       0.22    7.7   0.1    2.0  2  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component


Domain annotation for each model (and alignments):
>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  940.4   3.6    1e-285  2.1e-283       2     792 ..      58     915 ..      57     917 .. 0.90

  Alignments for each domain:
  == domain 1    score: 940.4 bits;  conditional E-value: 1e-285
    TIGR02374   2 vlvGnGmvGvrlieevlkkddkdefeitvfgeepdaaydrvlLssvlqeadledltLnsk.......dyyekh....gikllvnervikidreeksvitdagrtlsyDkLilatGsypfilPipGaDk.kgvfvyrtieDldaleaaakr..tkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveiv..kesvekaerlrfkD...Gs..........sleadlvvlaaGirPrdeLaaeaGlkvndrrGiivndsmqtsdPdiyavGecaehngrvyGLvaPlyeqakvladhll.................gve.eeyegadlsakLkllGvdvasaGdaq..........geteeaksikilDeqkeiykklvlsddkktllGavLvGDtsdkgrLldlvlkeaelsedplalil...kailea..eagallvealpdseqiCsCndvtkGalkaaiaeg.cstveelkactkagtsCGgCkPLveelLeaelaseytkskealCehtalsrdelveeikakelktfeellnklgkkt..GCsvCkPavaslLaslysekildeeatslqdsndrllaniqkdgtysvvPrvyGGeinaedLrkiadiveeyelyvkitggqrldlfGvkkddLPkiwkdLkeaglesghaygkalrtvktCvgsqfcryGqqdsvqLaielekryeglrtPhkiklgvsgCereCaeaalkDvGviatekGWnlyvgGngGtkaraadLlaadkdketlikyidrflqyyietadkLertaaWlerlg..ldhvrevliedelglraeleeelqrtlsvvkdewkevle 792
                  v++GnGmvG+++ie +++ d++++++i+ f+ee +aay+r+ L++++++ + + ++++++        +ye+     ++ + v+++++kid+e+k+vi++ gr ++yD  +latGsypf++Pi+G+Dk +gvfvyrti+Dl+a+ a  ++  +  aaviGgGLLGLeaa+a  +lG+d +++e+ap lm +q+D ++ +lL  ++e++Gl v+ +    e+v  +++ +++e+lrf+    G           +l++++++++aGirPrde+a+++G++v +r+G+ v+d +qtsdP +ya+Ge+a h g++yGLvaP+y++ak la++l+                 ++  e + gad+s+kLkl+Gvdvas+Gd            g+++  +s+ ++D ++++ykkl++ d+ ++l+G+vLvGD+sd+   l+l    a l  +p +li     a +ea  + g+    +++ ++q+CsCndv+kG + +ai++g  +++  lkactkagt+CGgC PLv++l+ + +a+ +t +k+ lCeh+++sr el+e+ik k+ +tf ++l ++g ++  GC++CkP+va +Las+y++kild+ +  lqd+ndr lan+q+ g+ysv+Pr+ GGei++ +L++i+++++ey+ly+kitg+qr+d++G++k+dLP+iw++L+e+g+esghaygkalrtvk+Cvgs +cryGq+dsv++a+e+e+ry+glr Phk+k +vsgC reCaea+ kD G+iate+G+nlyv+GngG ++r++dLlaad+d+et+iky drfl+yy  tad+L+rtaaWle+l+  l+h+++v+i+d+lgl+ae+e+++q  +++++dew +v++
  MMETSP1174-20130828|41665_1  58 VVIGNGMVGHKFIETLIDDDSDNDWNIVTFCEEDKAAYNRMRLTEYFKDRNPSSISMSGEyldngltAWYEDAiaagKVAIHVGDKATKIDTEKKVVISEEGREVEYDVAVLATGSYPFVPPIKGSDKtPGVFVYRTIDDLEAMIAFQEKhgVTSAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMCRQIDSAGNALLSGMIESLGLHVHCDARVSEVVvsGDEDKRVEGLRFTThsaGAseedlmaserVLDVGMIIVSAGIRPRDEVAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALHSGMIYGLVAPGYDMAKKLAKNLIsgasspllvegsgqetdDTTaEVFTGADMSTKLKLMGVDVASFGDYAaadqwksteeGDSNPYHSVTLNDPVSKVYKKLIFADEGRSLIGGVLVGDASDYATYLQLSRSSAPLEVTPSQLISgitSADMEAsgGGGGADASSMALDAQVCSCNDVSKGTILDAIKSGkAGDIGSLKACTKAGTGCGGCDPLVKDLFVMGMAEMGTTVKNHLCEHFEYSRSELFEIIKIKGHRTFGDVLVEHGTGKggGCEICKPTVAGILASIYNDKILDDGRDGLQDTNDRSLANMQRGGSYSVIPRIAGGEIDPAGLVTIGNVAKEYNLYTKITGAQRIDMLGANKEDLPDIWEKLNEGGFESGHAYGKALRTVKSCVGSAWCRYGQRDSVKFAVEVENRYKGLRSPHKLKSAVSGCIRECAEARCKDFGMIATENGYNLYVCGNGGANPRHGDLLAADIDEETVIKYCDRFLIYYLATADRLQRTAAWLEKLDggLEHLKDVVINDSLGLNAEMEAQMQYIVDTYHDEWADVVA 915
                  89*****************************************************99875333333369*986444489************************************************7479**************99876235788**********************************************************88777765225557899****96422232222222222369*************************************************************************987333333333333222211223569*********************861222221112344456799**************************************************999975211333443113445567789***********************99**************************************************************************999889*********************************************************************************************************************************************************************************************************************************************778************************************987 PP

>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.1   1.9e+03      28      57 ..     191     222 ..     187     227 .. 0.79
   2 !  114.8   0.0   1.9e-36   3.9e-34       1     102 [.     969    1071 ..     969    1074 .. 0.97

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 9.1
    TIGR02378  28 iFrvkkk..evyAiqnlcPhkrafvlsrGlvg 57 
                  ++r+ ++   + A q+  +   a+v   Gl+g
  MMETSP1174-20130828|41665_1 191 VYRTIDDleAMIAFQEKHGVTSAAVIGGGLLG 222
                  56666654468899999999999999999987 PP

  == domain 2    score: 114.8 bits;  conditional E-value: 1.9e-36
    TIGR02378    1 twqavckleelpeesgvavklddeqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdae.gelvvacPlhkrkfeLedGkcleddevsvktfevrvedgrvl 102 
                   +w++v+ ++++p   g+av++++ qlA+Fr +++e+yA+qn+cPhkrafvls+G++g+++ g   vacPlhk++f+Le+G+cl+d+ + +  f+vrv +  v+
  MMETSP1174-20130828|41665_1  969 EWTDVGPVTDFPLGIGTAVLYGEVQLAVFRYADDEWYATQNMCPHKRAFVLSQGILGQKDgGAKKVACPLHKKQFSLETGECLDDPTMRILDFPVRVVESSVK 1071
                   5***********************************************************99***********************************887775 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.15        31     144     169 ..      49      74 ..      40      85 .. 0.89
   2 !   82.4   0.0   2.9e-26     6e-24      67     285 ..     132     365 ..     121     374 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.15
    TIGR03385 144 ldkkkvekvvviGgGyiglemvealk 169
                  +dk +++++vviG G++g   +e l 
  MMETSP1174-20130828|41665_1  49 IDKADTRTAVVIGNGMVGHKFIETLI 74 
                  789999*************9999986 PP

  == domain 2    score: 82.4 bits;  conditional E-value: 2.9e-26
    TIGR03385  67 ekkkidvktksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegi.eldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrln....eevksvegeekve..vlt.............sgkvyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqtsveniyaiGDvaes 285
                     k+ +++  +  k+d+e+k+ v+ +  ++++ e  yD+ +l+tG  p +++i+g  + + vf  r ++d ea+ ++ +k+ v++++viGgG++gle + a+++ g++  ++e +  ++ +++D+  ++ +   +e+ +++++ +    e v+s +++++ve  ++t             s++v ++ ++i++ G++P  e++k+s++++  +G ++v++ +qts++ +yaiG+va  
  MMETSP1174-20130828|41665_1 132 AAGKVAIHVGDKATKIDTEKKV-VISE--EGREVE--YDVAVLATGSYPFVPPIKGSdKTPGVFVYRTIDDLEAMIAFQEKHGVTSAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMCRQIDSAGNALLSGMIESLGLHVHCDarvsEVVVSGDEDKRVEglRFTthsagaseedlmaSERVLDVGMIIVSAGIRPRDEVAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALH 365
                  5568999*********887765.5655..456677..99*****************956799****************************************************************9999998888887777665511116666667888998665552222222222222455678889*********************************************9865 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.1   7.8e-23   1.6e-20     104     321 ..     138     376 ..     111     395 .. 0.75

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 7.8e-23
    TIGR02053 104 vdllegkakfkdektvkvdl.gkevvgakrvliAtGarpavPeipGLkeae.........yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaav.eellaeeGvevvksakvkavskrnggkklvt.....vek.nd.......skkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeG 321
                  +++    +k+  ek+v + + g+ev+++  +++AtG+ p vP+i G +++           l+   ++++++   s +viGgg +++E+a+++  lG++ ++++ + +l+ ++ + +++a+ + ++++ G++v+ +a+v++v ++ ++ k+v+     ++           s++ +++  ++v +G +p  +    +  g++++ rG++ vd+ l+ts p++yA G+v  +  + +   + G
  MMETSP1174-20130828|41665_1 138 IHVGDKATKIDTEKKVVISEeGREVEYDV-AVLATGSYPFVPPIKGSDKTPgvfvyrtidDLEAMIAFQEKHGVTSAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMCRQIDSAGNALlSGMIESLGLHVHCDARVSEVVVSGDEDKRVEglrftTHSaGAseedlmaSERVLDVGMIIVSAGIRPRDE--VAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALHSGMIYGLVAPG 376
                  33444455677788888877477777766.99*****************9999998765556666788999999*********************************9998887777776516677789***********9988766666663222212221221111111334455667899999999988..56889*****************************99877666544445 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.2   3.1e-22   6.4e-20     107     327 ..     141     381 ..     128     393 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 3.1e-22
    TIGR01350 107 ikGeaklldkkevevkkekkekkleakniiiAtGseprelplk........leedekvvitseealelkev..peslvivGgGviGvEfasifaklGvkvtvielldril.paldaevskvlkkklkkkgvkiltnakvt..eve.keedevv.....veakkk.evetleaekvL......vavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaae 327
                       k+  +k+v +++e   +++e++ +++AtGs p  +p+k        + +  +++ + e +++++e+   +s +++GgG +G+E a +  +lG++  ++e+++ ++  ++d+    +l+ +++  g++++ +a+v+   v+ +e+++v+     ++  +  e++ + +e+vL      v+ G +p+ e    +  g+e++ rg ++vd+ l+t+ p++yaiG v+ +  +    ++ g+ +a+
  MMETSP1174-20130828|41665_1 141 GDKATKIDTEKKVVISEEG--REVEYDVAVLATGSYPFVPPIKgsdktpgvFVY--RTIDDLEAMIAFQEKhgVTSAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMcRQIDSAGNALLSGMIESLGLHVHCDARVSevVVSgDEDKRVEglrftTHSAGAsEEDLMASERVLdvgmiiVSAGIRPRDE--VAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALHSGMIYGLVAPGYDMAK 381
                  333568899999***9998..46*******************986665542222..257777877777665226899******************************8752678999999999*****************5433313444555888763333334556666666543333339******999..8899*****************************98766555555555555555 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1     4e-19   8.3e-17      64     282 ..     132     364 ..     128     368 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 4e-19
    TIGR03169  64 aekagaelvedeatgldleerkvllaereeisydvlsldvGsttalseve..gaadkavpvKPleellaaweellekakaseetkslavvGgGaagvElala.................lrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevedealllaegetleadavllatgakapa.wLaesglsldedGflavkktLqslshpevFaaGDcav 282
                  a+ + a +v d+at++d+e+++v+ +e++e++ydv++l +Gs++ +  ++   ++  ++  + +++l a + +++ek    ++ +s av+GgG+ g+E a a                 + ++++++g +    ++++  l  +  a+v + v    + +++e l+ ++ + +++e+ l+a+++ l++ ++++++g ++   + ++sg++++++G + v++ Lq+ s+p+v+a G +a 
  MMETSP1174-20130828|41665_1 132 AAGKVAIHVGDKATKIDTEKKVVISEEGREVEYDVAVLATGSYPFVPPIKgsDKTPGVFVYRTIDDLEA-MIAFQEK----HGVTSAAVIGGGLLGLEAAKAaydlgmdahimefapilMCRQIDSAGNALLSGMIESLGLHVHCDARVSEVVVSGDEDKRVEGLRFTTHSAGASEEDLMASERVLDVGMIIVSAGIRPRDeVAKDSGIEVHPRGGVPVDDLLQT-SDPSVYAIGEVAL 364
                  56677899*************************************999874344455666666666655.6666666....58899**************99666666555555555544444555554433334455555666666666666666666666666666666655557788899***************98516678******************9.9********9985 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     3e-14   6.1e-12      18     175 ..     677     827 ..     667     835 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3e-14
    TIGR02912  18 rgktairv.rvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevnkllqpiiegleieqeevqkgysasgtrnvtacignrvcpfanydttklakriekav..fpsdyhlkialtgcpndcikarmadlgilgvteprydadrcvgcg 175
                  rg + + + r+ gg ++   l  + ++a++y n   +it  q++++ g + ed++++ + l       +    e+ + y     r v +c+g   c++++ d+ k+a  +e       s+++lk a+ gc  +c+ ar +d+g++  te  y+ + c + g
  MMETSP1174-20130828|41665_1 677 RGGSYSVIpRIAGGEIDPAGLVTIGNVAKEY-NLYTKITGAQRIDMLGANKEDLPDIWEKL-------NEGGFESGHAYG-KALRTVKSCVGSAWCRYGQRDSVKFAVEVENRYkgLRSPHKLKSAVSGCIRECAEARCKDFGMIA-TENGYNLYVCGNGG 827
                  5554444449*********************.67889*****************9987655.......444555666665.4579**************************8753367999**********************996.89999999996655 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   8.9e-13   1.8e-10      25      99 ..     993    1072 ..     987    1074 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 8.9e-13
    TIGR02377   25 tfaiyrsaddeyyatdglcthekvh.ladglved.....tevecpkhagafdyrtgealrapvcvnlktypvkvvdgevlv 99  
                     a++r adde+yat+++c h+++  l++g++ +     ++v cp h+ +f   tge+l+ p+   l  +pv+vv+  v+ 
  MMETSP1174-20130828|41665_1  993 QLAVFRYADDEWYATQNMCPHKRAFvLSQGILGQkdggaKKVACPLHKKQFSLETGECLDDPTMRIL-DFPVRVVESSVKT 1072
                   679******************98763799998642233368*********************97665.7*******99975 PP

>> TIGR02064  dsrA: sulfite reductase, dissimilatory-type alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.1e-13   8.5e-11     122     222 ..     718     814 ..     694     819 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 4.1e-13
    TIGR02064 122 divllgtstevleeifeelrelgtdlGGs.GsalrtaesCvGkalCefacydtlkafteltkeyqdelhrPafPykfkikvsgCPndCvaaiarsdfaviGt 222
                   i +lg ++e l +i e+l+e g++ G + G+alrt++sCvG+a C +   d+ k+  e+ + y+  l     P+k+k  vsgC  +C +a+   df++i t
  MMETSP1174-20130828|41665_1 718 RIDMLGANKEDLPDIWEKLNEGGFESGHAyGKALRTVKSCVGSAWCRYGQRDSVKFAVEVENRYKG-L---RSPHKLKSAVSGCIRECAEAR-CKDFGMIAT 814
                  47789**********************876******************************999985.4...4689***************99.88*****98 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   1.1e-11   2.3e-09     275     444 ..     213     382 ..     204     387 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 1.1e-11
    TIGR01316 275 vvviGgGntavdaartalrlGaevhvv....yrrtredmtareeeikha.eeeGvkfefllqpvevi..GdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraaka 444
                    viGgG   ++aa++a  lG++ h++        r+  +a +  ++ + e  G++++  ++  ev+  Gde+ +v++++f+   +     + e+       +e +l++  +iv+ G ++   +a+ds++++ +rG + vd+ l+ts + v+a G+v + +  +   ++ G   ak+
  MMETSP1174-20130828|41665_1 213 AAVIGGGLLGLEAAKAAYDLGMDAHIMefapILMCRQIDSAGNALLSGMiESLGLHVHCDARVSEVVvsGDEDKRVEGLRFTTHSA----GASEE---DLMASERVLDVGMIIVSAGIRPRDEVAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALHSGMIYGLVAPGYDMAKK 382
                  679**********************98322224578877887777665415567777776655554434************93222....22222...34467899**************************************************998877777777777776665 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   2.1e-10   4.2e-08     102     303 ..     135     363 ..     122     367 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.1e-10
    TIGR01424 102 kagvellegraelvdantvevledgktytaekiliavGgrpvkpel......PGaelaitsde.....afdletlPksilvvGgGyiavefagifrGlGvkvtll.yrgekilrgfdddvraelaeeleerGirillktvlksi......ekvddGlkvtls....kdeeivadvvllatGrvPnvkglg.....leaaGvelndagaiavdeysrtsvpsiyavGdvt 303
                  k ++++ +  +++  +++v + e+g+++  +  ++a+G+ p  p +      PG  +  t d+     af+ ++   s++v+GgG ++ e a     lG+   ++ +    + r+ d    a l   +e  G+++++++ + ++      +k  +Gl+ t+     ++e+++a   +l +G      g+        ++G+e++ +g + vd+  +ts ps+ya+G+v+
  MMETSP1174-20130828|41665_1 135 KVAIHVGDKATKIDTEKKVVISEEGREVEYDVAVLATGSYPFVPPIkgsdktPGVFVYRTIDDleamiAFQEKHGVTSAAVIGGGLLGLEAAKAAYDLGMDAHIMeFAPILMCRQIDSAGNALLSGMIESLGLHVHCDARVSEVvvsgdeDKRVEGLRFTTHsagaSEEDLMASERVLDVGMIIVSAGIRprdevAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVA 363
                  456677777778888899999******************9976555111111666665666652233345666667789*********************99887234455668999999999**************998887633333235557766555435555666766655555555555555431111135678888888********************985 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   5.6e-10   1.2e-07     354     487 ..     212     363 ..     120     367 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 5.6e-10
    TIGR03140 354 kvaviGGGnsGieaaidlaGivehvtvlefadelk......adkvlveklkslsnvdiltsaktkeiv..g.dgdkvtglkykdrssee........ekkleldGvfvqiGlvpnteflkda.velnrrGeividergrtsvkGifaaGdvt 487
                  + aviGGG  G+eaa     +  +  ++efa  l       a + l++ + +   +++   a+  e+v  g ++++v+gl+++ +s+++        e+ l++  + v  G+ p  e+ kd+ +e+  rG + +d   +ts + ++a G+v+
  MMETSP1174-20130828|41665_1 212 SAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMcrqidsAGNALLSGMIESLGLHVHCDARVSEVVvsGdEDKRVEGLRFTTHSAGAseedlmasERVLDVGMIIVSAGIRPRDEVAKDSgIEVHPRGGVPVDDLLQTSDPSVYAIGEVA 363
                  479***********9998889999999999999862222224556778788888899*******999833324568******99876541112222256799999****************99**************************986 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   6.8e-10   1.4e-07     107     305 ..     138     363 ..     127     415 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 6.8e-10
    TIGR03452 107 idvyesharfv.grktlrtedgeeitadqvviaaGsrpvipeaiae...sgv.ryytnedimrlpelp.....eslvivGgGyialefahvfsalGtkvtlvarsekll.rklded....iserftela.kkkfdvrlgrnvtaaeqdddgvtlelddGstveadvllvatGrvpngdll.........d..aeaaGvevdedgrvkvdeyqrtsaegvfalGdvs 305
                  i+v ++ ++   ++k +  e+g e+  d  v+a+Gs p++p++       gv  y+t +d+  +         +s  ++GgG++ le a+    lG++  ++  +  l+ r++d      +s  +++l  + + d r ++ v+++++d++   l+  + s+ +++  l+a  rv +  ++         d  a+ +G+ev+  g v vd+  +ts  +v+a+G+v+
  MMETSP1174-20130828|41665_1 138 IHVGDKATKIDtEKKVVISEEGREVEYDVAVLATGSYPFVPPIKGSdktPGVfVYRTIDDLEAMIAFQekhgvTSAAVIGGGLLGLEAAKAAYDLGMDAHIMEFAPILMcRQIDSAgnalLSGMIESLGlHVHCDARVSEVVVSGDEDKRVEGLRFTTHSAGASEEDLMASERVLDVGMIivsagirprDevAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVA 363
                  556666666662455566789999*****************97643111344379****9866644431111246789*************************999876377775422224555555552457899999999999988876556666555555555555555554443331111111111225678****************************97 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   6.3e-10   1.3e-07      93     325 ..     123     383 ..     106     391 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 6.3e-10
    TIGR01421  93 lngiyqknlekekvelieGyae..ftkde..tvevngkeytakhiliatGgkpsip.....eniPGaelgldsdgf...faleelP..krvvivGaGyiavelaGvlhglGsktdlv.irrervlrsfdelisekvveelekaglevhklskvvkv......ektvegklvitledg.........keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserl 325
                  l + y++++   kv +  G  +     ++   ++ +g+e++ +  ++atG+ p +p     ++ PG  +  + d++    a++e     + +++G G +++e a     lG +++++ +    + r+ d+  +  +   +e  gl+vh  ++v +v      +k veg    t  +g         + + dv  +i + G +p  +    ++ g++++ +g + vd+   t+ +++ya+G+v  +  +    +a G  ++++l
  MMETSP1174-20130828|41665_1 123 LTAWYEDAIAAGKVAIHVGDKAtkIDTEKkvVISEEGREVEYDVAVLATGSYPFVPpikgsDKTPGVFVYRTIDDLeamIAFQEKHgvTSAAVIGGGLLGLEAAKAAYDLGMDAHIMeFAPILMCRQIDSAGNALLSGMIESLGLHVHCDARVSEVvvsgdeDKRVEGLRFTTHSAGaseedlmasERVLDVGMIIVSAGIRPRDE--VAKDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVALHSGMIYGLVAPGYDMAKKL 383
                  67778888888888877764330133334335666788999999*********999887878899998877777652225555654115789***********************9934445677******999999*************99999844444446666643333333378888888788999***********8644..46789*****************************987777666666666666655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   2.6e-05      64     276 ..     127     364 ..     114     377 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
    TIGR01292  64 keqakkfgaeiil..eevkkvdkkerpfkvltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDg....alfknk....evavvGggdsAveealyLskiakkVtl......vhrrdklraekillerlkknekievllnstveei..kGde..kvesvkikntktke........eeelkvdgvFiaiGhepntellkel.leldeegyivvdeemrTsveGvfaaGDvrd 276
                  +e a + g+  i   ++ +k+d+++  ++v++e+++e++ +  ++AtG+ +    ikg+++    Gv +  + D       f++k    + av+Ggg   +e a    +++ + ++      +  r+   a ++ll  + +   ++v+ +++v+e+  +Gde  +ve+++ + ++ +         e+ l+v  + +  G +p+ e+ k++ +e+  +g + vd+  +Ts + v+a G+v  
  MMETSP1174-20130828|41665_1 127 YEDAIAAGKVAIHvgDKATKIDTEK--KVVISEEGREVEYDVAVLATGSYPFVPPIKGSDKT--PGVFVYRTIDDleamIAFQEKhgvtSAAVIGGGLLGLEAAKAAYDLGMDAHImefapiLMCRQIDSAGNALLSGMIESLGLHVHCDARVSEVvvSGDEdkRVEGLRFTTHSAGAseedlmasERVLDVGMIIVSAGIRPRDEVAKDSgIEVHPRGGVPVDDLLQTSDPSVYAIGEVAL 364
                  5555555554444346777787755..777888899*********************99986..5666555666546555699984443468*****9999888888777777776111111455666677778888888888**********997335776679*****987766541111111145578889999*****************************************9975 PP

>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     4e-07   8.3e-05     323     388 .]     750     818 ..     685     818 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4e-07
    TIGR02435 323 prariaACtGapgCasaladtkadAealaaeleetvd...ltvHlsGCaksCAapgpaaltLvaaeagv 388
                  +   +  C G++ C+ ++ d  + A  + ++ +   +   l+  +sGC + CA++   + +++a+e+g+
  MMETSP1174-20130828|41665_1 750 ALRTVKSCVGSAWCRYGQRDSVKFAVEVENRYKGLRSphkLKSAVSGCIRECAEARCKDFGMIATENGY 818
                  556799**************999998887765554444777889***********************97 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.022       4.5     251     288 ..     141     175 ..     118     192 .. 0.76
   2 !   13.0   0.0   2.9e-05    0.0059     262     328 ..     299     363 ..     200     374 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.022
    TIGR01423 251 nenpakveknadgskhvvfesgkeldvdvvmlaigrlp 288
                   ++ +k++      k v+ e g+e+++dv +la g  p
  MMETSP1174-20130828|41665_1 141 GDKATKID---TEKKVVISEEGREVEYDVAVLATGSYP 175
                  44444444...345678889**************9887 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.9e-05
    TIGR01423 262 dgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvt 328
                    s+   + s + ldv +++++ g  pr ++   +  g+e+  +g + vd+  +t  + +yaig+v+
  MMETSP1174-20130828|41665_1 299 GASEEDLMASERVLDVGMIIVSAGIRPRDEVA--KDSGIEVHPRGGVPVDDLLQTSDPSVYAIGEVA 363
                  44555667788899999999999999999875..679****************************96 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06   0.00035      51     166 ..     702     812 ..     691     817 .. 0.85
   2 ?   -3.8   0.0       5.1   1.1e+03     272     302 ..     843     873 ..     840     876 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.7e-06
    TIGR02066  51 diadkyadGylritirnnveflvsdeskvqklideleklgfpvGGt.gdavagnivhtqgwlhcdipaidasgivkalmdelieyfteeklPakvrislsccasmcgavtasdiaiv 166
                  ++a +y   y +it ++ ++ l  +++ + ++ ++l++ gf  G   g+a+  +++ + g   c     d+     a+  e+ + ++  + P k++ ++s+c  +c+  ++ d  ++
  MMETSP1174-20130828|41665_1 702 NVAKEYN-LYTKITGAQRIDMLGANKEDLPDIWEKLNEGGFESGHAyGKALR-TVKSCVGSAWCRYGQRDSVK--FAV--EVENRYKGLRSPHKLKSAVSGCIRECAEARCKDFGMI 812
                  5666664.599*********************************76156666.7************9999643..344..67889999999*********************98765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.1
    TIGR02066 272 pevvavvkkileaykedakkyerlaewveri 302
                  ++v+++  + l  y + a + +r a w+e++
  MMETSP1174-20130828|41665_1 843 ETVIKYCDRFLIYYLATADRLQRTAAWLEKL 873
                  6899999999*9***************9985 PP

>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.7   4.5e-05    0.0092     135     195 ..     536     596 ..     531     610 .. 0.88
   2 ?    3.4   0.0     0.043       8.9     136     190 ..     599     655 ..     596     677 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.5e-05
    TIGR02000 135 lvckcfgvdeakvrravrendlttleevtnytkaGGgcsschekieevlkevlakkaavtl 195
                   vc c  v+++++ +a+++ +   +  +   tkaG gc+ c   +++++   +a+ + +  
  MMETSP1174-20130828|41665_1 536 QVCSCNDVSKGTILDAIKSGKAGDIGSLKACTKAGTGCGGCDPLVKDLFVMGMAEMGTTVK 596
                  69***************************************99998888777777766655 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.043
    TIGR02000 136 vckcfgvdeakvrravrendlttleevt..nytkaGGgcsschekieevlkevlakk 190
                  +c+ f  + +++ ++++  +  t  +v   + t  GGgc+ c+  +  +l+ + ++k
  MMETSP1174-20130828|41665_1 599 LCEHFEYSRSELFEIIKIKGHRTFGDVLveHGTGKGGGCEICKPTVAGILASIYNDK 655
                  68888888888889999999999888743378999************9999987665 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.052        11      62     134 ..     681     752 ..     652     763 .. 0.80
   2 !    7.7   0.1    0.0011      0.22     454     522 ..     789     857 ..     767     868 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.052
    TIGR02041  62 lllrvrlpGGvitpkqwlkldklarkyangslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnr 134
                  + +  r+ GG i p+  +++ ++a++y   + ++t  q   + G  k++l ++ + l++ +++s  a g   r
  MMETSP1174-20130828|41665_1 681 YSVIPRIAGGEIDPAGLVTIGNVAKEYNLYT-KITGAQRIDMLGANKEDLPDIWEKLNEGGFESGHAYGKALR 752
                  45567999*******************9865.9*********************9999988877666665555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0011
    TIGR02041 454 eivlrvtGcpnGcarallaeiglvGkapGrynlylGgdr.egsrlnklykeniteeeilaeldellgrya 522
                  ++   v+Gc   ca a   + g++    G ynly+ g+   + r   l   +i+ee +++  d++l  y 
  MMETSP1174-20130828|41665_1 789 KLKSAVSGCIRECAEARCKDFGMIATENG-YNLYVCGNGgANPRHGDLLAADIDEETVIKYCDRFLIYYL 857
                  455679******************99888.*****99872556999************999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.11u 0.19s 00:00:01.30 Elapsed: 00:00:00.74
# Mc/sec: 2010.16
//
Query:       MMETSP1174-20130828|41681_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 375.97
//
Query:       MMETSP1174-20130828|41699_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 187.56
//
Query:       MMETSP1174-20130828|41734_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.56
# Mc/sec: 219.98
//
Query:       MMETSP1174-20130828|41739_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-20   71.6   0.0    1.6e-20   71.4   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0058   13.3   0.0       0.01   12.5   0.0    1.3  1  TIGR00959 ffh: signal recognition particle protein


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   7.8e-24   1.6e-20       2     134 ..      16     140 ..      15     161 .. 0.88

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 7.8e-24
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvks 134
                  k+++i++vG +++GK+t+l++l+  + + t + p+++++++t  + +++  + ++++D++Gq + ++++r+y+++++++++vvd + + ++++ +  ++  +   + +  ++ +++ +nK+Dl ++++  + +
  MMETSP1174-20130828|41739_1  16 KDMRILMVGLDAAGKTTILYKLKLGE-VVTTI-PTIGFNVET--VDYKN--ISFTVWDVGGQSKIRPLWRHYYQNTQGLIFVVDSNDR-DRIDAAR-DEIHQMLGSEELRESLLLVYANKQDLPNSMSAAEMT 140
                  899***********************.88888.*******99..8****..77***********************************.9998888.7777777777779**************955544443 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     5e-06      0.01      96     120 ..      14      38 ..       4      44 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-06
    TIGR00959  96 ekkpavillvGLqGsGKtttaaKla 120
                  +kk + il+vGL  +GKtt   Kl 
  MMETSP1174-20130828|41739_1  14 SKKDMRILMVGLDAAGKTTILYKLK 38 
                  467899**************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 686.34
//
Query:       MMETSP1174-20130828|41741_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 391.57
//
Query:       MMETSP1174-20130828|41737_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.43
# Mc/sec: 1982.91
//
Query:       MMETSP1174-20130828|41740_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1567.37
//
Query:       MMETSP1174-20130828|41746_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 809.93
//
Query:       MMETSP1174-20130828|41743_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   62.2   0.2    2.5e-15   54.5   0.0    2.1  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    1.1e-14   52.7   0.0    1.5e-14   52.2   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    7.7e-14   49.4   0.0    2.8e-13   47.5   0.0    1.7  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.1e-08   31.6   0.0    3.2e-08   31.0   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    6.5e-06   23.6   0.0    2.1e-05   21.9   0.0    1.8  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    1.6e-05   22.7   0.0    2.6e-05   22.0   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0001   20.4   0.1    0.00032   18.8   0.0    1.9  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00023   18.5   0.0    0.00045   17.6   0.0    1.4  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
    0.00024   18.4   0.0    0.00038   17.7   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00045   17.0   0.0    0.00065   16.5   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0023   15.3   0.0     0.0039   14.5   0.0    1.4  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0085   13.6   0.0      0.047   11.2   0.0    1.9  2  TIGR00740 TIGR00740: putative methyltransferase
  ------ inclusion threshold ------
      0.015   12.5   0.0      0.031   11.5   0.0    1.5  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0     8e-18   2.5e-15      41     151 ..     187     297 ..     182     316 .. 0.93
   2 !    5.8   0.0    0.0059       1.9     193     222 ..     318     347 ..     308     353 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 8e-18
    TIGR02752  41 mnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcle 151
                   n+ +g+ +ld+  g++  +   a++vg++g+v+g+d++ +mls ++e  k+  + nv++  g+   lp  d s+d v     +   p   qv +em+rv+ pgg+v   +
  MMETSP1174-20130828|41743_1 187 ANLVEGEVVLDLGSGAGMDCFIAAKEVGPTGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIEYLPIGDASIDCVVSNCVINLSPTKAQVYREMNRVLVPGGRVSISD 297
                  57889************999999********************************************************9999999********************97655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0059
    TIGR02752 193 arefpgkdelaelfkeaglkdvkvksytgg 222
                  +re p + e++ +f+ ag++dvk+     g
  MMETSP1174-20130828|41743_1 318 SRERPXEGEMRTMFEAAGFTDVKIAVKENG 347
                  5888999****************9876666 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   4.8e-17   1.5e-14      34     136 ..     191     299 ..     180     345 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 4.8e-17
    TIGR02072  34 epakvLdiGcGtGiltr.allkrfpqaelialDiseemleqakkkls.....nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfg 136
                  e + vLd+G+G G+    a ++  p+ ++i +D+ +eml+ a+++ +     nv+f  g+ie lp+ ++s+D++vSn ++     +++v +e++rvl pgG + +s++ 
  MMETSP1174-20130828|41743_1 191 EGEVVLDLGSGAGMDCFiAAKEVGPTGHVIGVDMTPEMLSKARETGKeggflNVTFRLGEIEYLPIGDASIDCVVSNCVINLSPTKAQVYREMNRVLVPGGRVSISDVL 299
                  5568*********9655166677899*******************99*******************************************************9999875 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0     9e-16   2.8e-13      39     149 ..     191     303 ..     184     317 .. 0.85
   2 ?   -0.7   0.0       0.5   1.6e+02     186     208 ..     319     341 ..     300     351 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 9e-16
    TIGR01934  39 keekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakekeeanvefieadaeeLpfednsfdavtiafGlRNv.tdiekaLkelaRVlkpggrlvilefskpkn 149
                  ++e vlD+ +G+G   +  ak+++   +v+gvD+++emL  a++  ke    nv+f  ++ e Lp+ d+s+d+v  +  + N+   ++++ +e++RVl pggr+ i ++ + + 
  MMETSP1174-20130828|41743_1 191 EGEVVLDLGSGAGMDCFIAAKEVGptGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIEYLPIGDASIDCVV-SNCVINLsPTKAQVYREMNRVLVPGGRVSISDVLRIED 303
                  6789*********888888888888********************9999999*********************96.555556515778999***************99887654 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.5
    TIGR01934 186 ekfpskeelaallkeagfeevry 208
                  ++ p + e+++++++agf+ v++
  MMETSP1174-20130828|41743_1 319 RERPXEGEMRTMFEAAGFTDVKI 341
                  455888999*********99876 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     1e-10   3.2e-08      46     154 ..     188     298 ..     163     310 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1e-10
    TIGR01983  46 kkleglkvlDvGcGgGllseslarlgae...vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflsti 154
                  + +eg  vlD+G+G+G+ +   a++      v+g+D++ e+++ A++  k+ + +++ ++l ++e l    ++s D v++  v++  ++ +++ +e+ ++l pgg + +s +
  MMETSP1174-20130828|41743_1 188 NLVEGEVVLDLGSGAGMDCFIAAKEVGPtghVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIEYLPIG-DASIDCVVSNCVINLSPTKAQVYREMNRVLVPGGRVSISDV 298
                  4567889**********99888886443366************************************887.667*********************************99976 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.8e-08   2.1e-05      87     242 ..     192     342 ..     183     351 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.8e-08
    TIGR03534  87 keklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglkeveflksdl.lealeekgkfdlivsNPPYipeaekeeleeevrkfEPklALv.ggedGldlyrriaeeaakllkeggllllEigekqae.avaelleaagfkeveil 242
                   e   vlDlg+G G+     ake+ p+ +vi+vD+++e l+ ar+  k+ g  +v+f  +++ + ++  + ++d +vsN   i+    +  + +v   E ++ Lv gg+  ++++ ri e+++++l++   ++ E  e+  e ++++++eaagf++v+i 
  MMETSP1174-20130828|41743_1 192 GE--VVLDLGSGAGMDCFIAAKEVgPTGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIeYLPI-GDASIDCVVSNC-VIN---LSPTKAQVY-REMNRVLVpGGRVSISDVLRI-EDIPAHLQTAQAFAAESRERPXEgEMRTMFEAAGFTDVKIA 342
                  44..79*********8877777766999************************9********944456.999********6.344...444555566.677888885567777777664.78888888888888888877544378888888888888875 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.3e-08   2.6e-05      74     135 ..     188     249 ..     172     253 .. 0.93

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 8.3e-08
    TIGR00080  74 elkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkeg 135
                  +l++g+ vL++G+G+G    + a+ vg  g v++++  +e+  ka+ + k+ +  nv+ + g
  MMETSP1174-20130828|41743_1 188 NLVEGEVVLDLGSGAGMDCFIAAKEVGPTGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLG 249
                  689999*********************************************99999998876 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     1e-06   0.00032      12     105 ..     184     299 ..     182     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1e-06
    TIGR02469  12 LakLrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieivegdap.....................kaeeds.leeadavfvgGsgkklkeil 105
                  La  +l +g+v+lD G+G+G     aa+ v+  g+v++++ ++e l+  +e  ++ g+ n+    g+++                       ++ +  +e+++v+v G++  + ++l
  MMETSP1174-20130828|41743_1 184 LATANLVEGEVVLDLGSGAGMDCFIAAKEVGPtGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIEylpigdasidcvvsncvinlsPTKA-QvYREMNRVLVPGGRVSISDVL 299
                  77889999************9988888888888**********************9**999999999997766666666666655555421122.2356666666666666665555 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06   0.00045      31     113 ..     190     275 ..     185     288 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
    TIGR00438  31 kkGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk..pienvdfirGdf.tdeevlekile.rvgddkvdvvisdaaPnlsGi 113
                   +G++vldlG+  G    +a+++vg  G vi+vd+ p    ++ +    +G f +    l +i    +gd  +d v+s+   nls +
  MMETSP1174-20130828|41743_1 190 VEGEVVLDLGSGAGMDCFIAAKEVGPTGHVIGVDMTPEMlsKARET-GKEGGFlNVTFRLGEIEYlPIGDASIDCVVSNCVINLSPT 275
                  48*********************************97432233333.3334430344445555441477778888888888888765 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06   0.00038      52     124 ..     189     266 ..     182     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.2e-06
    TIGR02021  52 slkGkkvlDAGCGtGllsielAkr...GaivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavva 124
                  +++G+ vlD G G+G+     Ak+     +v +vD++++++++ar+  ++     nv+F  +++e l       D vv+
  MMETSP1174-20130828|41743_1 189 LVEGEVVLDLGSGAGMDCFIAAKEvgpTGHVIGVDMTPEMLSKARETGKEGG-FLNVTFRLGEIEYLPigdASIDCVVS 266
                  789************977777776422469***************9998887.69********9987552245677776 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     2e-06   0.00065     288     352 ..     186     253 ..     181     279 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2e-06
    TIGR00479 288 alelqgeekvvDaycGvGtftlplAkqa...ksvvgvevvkesvekakrnAelngianveflagelee 352
                   ++l + e v+D+ +G G   +  Ak++    +v+gv++ +e++ ka+   +  g  nv+f  ge+e 
  MMETSP1174-20130828|41743_1 186 TANLVEGEVVLDLGSGAGMDCFIAAKEVgptGHVIGVDMTPEMLSKARETGKEGGFLNVTFRLGEIEY 253
                  6899999************99999999833358*******************************9985 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05    0.0039     159     262 ..     191     300 ..     173     318 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.2e-05
    TIGR00406 159 kdkkviDvGcGSGiLs.iaalklg.aakvvavDiDplavesarkNlelNqvsdll.qvklenleqkiegkaDvivaNilAe...vikellsqivrLvkegGllilSGile 262
                  ++++v+D+G+G+G+   iaa+  g    v++vD+ p  + +ar+  +  +  + + ++  ++     +  +D +v+N + +      +++ ++ r++ +gG + +S +l 
  MMETSP1174-20130828|41743_1 191 EGEVVLDLGSGAGMDCfIAAKEVGpTGHVIGVDMTPEMLSKARETGKEGGFLNVTfRLGEIEYLPIGDASIDCVVSNCVINlspTKAQVYREMNRVLVPGGRVSISDVLR 300
                  4689*********9654999999934589***************999988765541444444666778999******987622134689999999999999999999886 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.52   1.6e+02     101     159 ..      91     149 ..      68     152 .. 0.81
   2 !   11.2   0.0   0.00015     0.047      54     168 ..     192     304 ..     180     314 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.52
    TIGR00740 101 aykaaipvevlcndireveikeasavvlnfvlqflepeereallkkiyeglnlnGvlvl 159
                  a k+++ + + ++d + v i + ++  l   l+  +p++ +al++  y   +++G+ vl
  MMETSP1174-20130828|41743_1  91 ANKSETVLLLGEKDDQAVSIVNNAIEGLRRRLKDGPPTDVHALVRAAYAETAIGGASVL 149
                  56677777777888899999999999999999999999999999999999999998876 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00015
    TIGR00740  54 kslvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkaykaaipvevlcndireveikeasa..vvlnfvlqflepeereallkkiyeglnlnGvlvlsekisfeda 168
                  +  v dlG   G   + + +++     ++ig+d ++ ml +are  k+    + v +  ++i  + i +as+  vv n v   l p++ ++  + + + l ++G + +s+ ++ ed 
  MMETSP1174-20130828|41743_1 192 GEVVLDLGSGAGMDCFIAAKEVGP-TGHVIGVDMTPEMLSKARETGKEGGF-LNVTFRLGEIEYLPIGDASIdcVVSNCV-INLSPTKAQV-YREMNRVLVPGGRVSISDVLRIEDI 304
                  56799*******887777788876.889****************9887544.5889999***********9742444555.5688988776.577899999****999999999995 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.8e-05     0.031      15      71 ..     190     247 ..     182     256 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 9.8e-05
    TIGR00091  15 nkkplvleiGcGkGrfliklAkq.npeknflGiEiekpivlkainkaeklglkNlkvl 71 
                  ++  +vl++G G G      Ak+  p+  ++G+ + + +  ka ++ ++ g+ N+   
  MMETSP1174-20130828|41743_1 190 VEGEVVLDLGSGAGMDCFIAAKEvGPTGHVIGVDMTPEMLSKARETGKEGGFLNVTFR 247
                  56789*********98777777626*****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.53
# Mc/sec: 1035.99
//
Query:       MMETSP1174-20130828|41750_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-13   46.0   0.0    1.7e-12   45.2   0.0    1.3  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   4.2e-16   1.7e-12      39     170 ..      80     204 ..      71     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 4.2e-16
    TIGR01262  39 kkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepa..LlpkdpakrarvralalliacdihPlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvGdevtladvcLvpqv 170
                  k++  + +NP+++vPtL+i  ge++ ++  i e+Le+++p++   L+p +p +ra+vr+l +l+     P    +++  l+++    + +k++ +++ + kGl+++ +l  +  g ++ G+e +ladv+L+p  
  MMETSP1174-20130828|41750_1  80 KEDYKRDVNPTGEVPTLQIS-GETVFEADVISEFLEDRFPHQGtsLMPVNPVARAKVRHLIKLMNG---PTMVSAMYGCLMNQ----DPSKDSAIRDKLYKGLQSFVQLS-SDGGPYFLGAEFSLADVLLMPMY 204
                  34445789************.6999999************98778**************9888765...77777777777754....567777899999*******8865.559******************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 951.71
//
Query:       MMETSP1174-20130828|41747_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    5.4  72.5     0.0016   14.8  35.1    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8  35.1     4e-07    0.0016      15      98 ..       4      86 ..       1     126 [. 0.42
   2 ?   -3.2   9.6      0.11   4.6e+02       2     109 ..     129     231 ..     128     246 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4e-07
    TIGR01642 15 rdrdkskeRsRkRsrdrsrdRdRdrr.drrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkr 98
                 rdr++ + RsR+R r+rsrdRdRdr  dr r r +dsRdR r ++d  ++++ +  sr r Rd  r   r++  e++e + s+k 
  MMETSP1174-20130828|41747_1  4 RDRERRRRRSRDRTRSRSRDRDRDRDrDRSRDRGRDSRDRGRDSRDRSRRRDRRTTSRSRQRDTARDTVRDV--EKQEDKDSLKA 86
                 222222222222222222222222222233445555555555555554444444444333333333333333..33333333322 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.11
    TIGR01642   2 DkekdrerEksrerdr.dkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddk 109
                  D++k++erE   e  + +  +eR++  + ++ + R R+++  +   ++++R   +  + +r+  +  e  +r S +  r  + ++ ++ +e+r++ +r    + ++d+ 
  MMETSP1174-20130828|41747_1 129 DEMKRKERERMLETIQaEIEEERKKMLEIQKIKIRAREQE--QLKAQEEKRRTAELAELKRK--Q--EAEERISASAARLAEVERLQQLEEQRENEERVAAAQARQDQD 231
                  8999999999887755155677888888888888877777..33333444444444444444..3..333344444444455555555555666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       845  (0.205997); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 878.77
//
Query:       MMETSP1174-20130828|41745_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-26   90.7   1.1    1.4e-14   51.4   0.0    2.9  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
      3e-12   43.9   0.1    0.00074   16.3   0.1    3.1  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.6e-09   34.9   0.0    4.2e-05   20.4   0.0    3.1  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    4.2e-08   30.4   0.4      0.067    9.9   0.0    3.2  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    0.00022   18.2   0.1      0.011   12.6   0.0    2.5  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00044   17.9   0.0     0.0018   15.9   0.0    1.8  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00082   15.9   0.0     0.0013   15.2   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0085   13.2   0.0      0.019   12.0   0.0    1.5  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0088   12.3   0.0      0.012   11.8   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
  ------ inclusion threshold ------
      0.035   10.6   0.2      0.056    9.9   0.1    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
      0.035   10.7   0.1       0.89    6.0   0.0    2.1  2  TIGR02028 ChlP: geranylgeranyl reductase
      0.052   10.7   0.2      0.071   10.2   0.1    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.063   10.2   0.8       0.11    9.4   0.1    1.6  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   4.5e-17   1.4e-14       1     166 [.      61     233 ..      61     261 .. 0.77
   2 !   37.0   0.0   1.1e-12   3.4e-10     266     371 ..     318     426 ..     299     443 .. 0.76
   3 ?   -3.1   0.2       1.5   4.8e+02      32      66 ..     505     537 ..     498     541 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 4.5e-17
    TIGR03219   1 lrvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraieglG......laeaykkvadrtsapwqdiwfewrrgsdasylgatiapgvG.qssvhradfldallkklpegiakfgkkaksieeqae..evevsfedGteyradlligadGiksalrdyvl 166
                  lrv i GGG+ G+ala +l+k +h++v++ e + +f   G  + + +na+r i+ +       + ++++   d+++   + i  +w    d    + +   ++     + r d+ +  ++ lpeg+   g+ ++ +e++++   v+  ++ G + + d+ligadGi sa+r ++ 
  MMETSP1174-20130828|41745_1  61 LRVLIAGGGVGGLALANSLAKVPHIKVTVLERTESFKRFGGPIQLASNALRIIKDMDepvydqVMSKFTFTGDKKNGIKDGIRDDWYAMFDLA--SPAEDRDMPyTGVIERPDLQEIYMGALPEGVLLNGDGVVGYERNENgpGVKAVMDSGKTVEGDVLIGADGIWSAVRATMR 233
                  7899*************************************************9986222222444555555665555555666665555422..222233343145689*********************99998876552279999***********************9875 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 1.1e-12
    TIGR03219 266 fagwgdaarvllelieaptlwalhdlaelp.....gyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGe 371
                  f+gw++ ++ ++++ ++  +    dl + p     ++ +G val+Gd+ ham+p  G G  q leda++l++ le   +  ++++  l+ y   r  r++ vq  s+ a +
  MMETSP1174-20130828|41745_1 318 FDGWSKDIHHIMKATKEHEIEQ-RDLYDRPpsvfkAWTDGNVALLGDSVHAMMPNLGQGGCQALEDAFVLKQELESVGTR-SEISGKLNEYRGRRLIRSAAVQGLSRFASD 426
                  6666666666666666555533.3333333111115669***********************************987665.567777788999999999999988887766 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.5
    TIGR03219  32 aapafgevGaGvsfGanavraieglGlaeaykkva 66 
                  a  af e+G G+  G+  v  +eglGl e  k+v 
  MMETSP1174-20130828|41745_1 505 AGGAFEELGLGI--GSLGVLGLEGLGLEEGVKDVV 537
                  567999999987..777889999999998877765 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.3e-06   0.00074       2      34 ..      63      95 ..      62     117 .. 0.90
   2 !   10.5   0.0   0.00013     0.041     139     171 ..     200     232 ..     179     235 .. 0.85
   3 !   13.4   0.0   1.8e-05    0.0056     277     345 ..     355     420 ..     330     440 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.3e-06
    TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
                 ++I+GgG+ GlalA +La+ +++kv+++e++++
  MMETSP1174-20130828|41745_1 63 VLIAGGGVGGLALANSLAKVPHIKVTVLERTES 95
                 89****************999********9875 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00013
    TIGR01988 139 sdaveltlsdgetleakLlvgADGanSkvrqaa 171
                     v+  +++g+t+e ++l+gADG  S+vr ++
  MMETSP1174-20130828|41745_1 200 GPGVKAVMDSGKTVEGDVLIGADGIWSAVRATM 232
                  456788899*********************876 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 1.8e-05
    TIGR01988 277 aervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaa 345
                  +  val+Gd  h + P  GQG    l+D+  L + l+   +r+e       L++Y  +r    aa++++
  MMETSP1174-20130828|41745_1 355 DGNVALLGDSVHAMMPNLGQGGCQALEDAFVLKQELESVGTRSEIS---GKLNEYRGRRLIRSAAVQGL 420
                  6689********************************9876665443...57888888887777666655 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.3e-07   4.2e-05       2     167 ..      63     231 ..      62     235 .. 0.81
   2 !    9.8   0.0   0.00022     0.069     262     330 ..     342     410 ..     327     432 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.3e-07
    TIGR01984   2 viivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqileklg......iweklekeatpikdih..vsdrgafgalelr..aeevalpaLGyVveladlkqallkrlaekkkiklyapaelkeierekde..aevkldneqkleakLlvaAdGanskvres 167
                  v+i Ggg+ Gl+lA++L++  ++k++++e ++  +        ++ l+  +  i++ ++      +++k+  +  + + i+  + d     + +l   ae+ ++p  G V+e  dl+++++ +l e     l++ + +  +er+++   ++  +d+++++e+++l+ AdG  s+vr  
  MMETSP1174-20130828|41745_1  63 VLIAGGGVGGLALANSLAKVPHIKVTVLERTESFKR----FGGPIQLASNALRIIKDMDepvydqVMSKFTFTGDKKNGIKdgIRDD-WYAMFDLAspAEDRDMPYTG-VIERPDLQEIYMGALPEG---VLLNGDGVVGYERNENGpgVKAVMDSGKTVEGDVLIGADGIWSAVRAT 231
                  89***************************9876665....35689999**********99999999999998888888886334444.45566665115555555555.9************88777...56678999******99944566669******************99976 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00022
    TIGR01984 262 aypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylker 330
                  +y    ++ +   +  v+l+g++ + + P  gQG  + l D++ L + le+  +    +  l+ey  +r
  MMETSP1174-20130828|41745_1 342 LYDRPPSVFKAWTDGNVALLGDSVHAMMPNLGQGGCQALEDAFVLKQELESVGTRSEISGKLNEYRGRR 410
                  5555556666777889*******************************9987754444455666666665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00021     0.067       3      36 ..      63      93 ..      61     108 .. 0.83
   2 !    8.4   0.0   0.00064       0.2     154     189 ..     197     232 ..     173     252 .. 0.89
   3 !    8.6   0.0   0.00055      0.17     334     369 ..     357     392 ..     351     420 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00021
    TIGR01989  3 vvivGgGlvGlalAaalkknpslkdkkvllldav 36
                 v+i+GgG+ GlalA +l+k p++   kv++l+ +
  MMETSP1174-20130828|41745_1 63 VLIAGGGVGGLALANSLAKVPHI---KVTVLERT 93
                 89****************98865...67777764 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00064
    TIGR01989 154 ndnsnlvkikledgetlktklliGADGanSkvRkaa 189
                  n+n   vk  ++ g+t + ++liGADG  S vR ++
  MMETSP1174-20130828|41745_1 197 NENGPGVKAVMDSGKTVEGDVLIGADGIWSAVRATM 232
                  55666677778999*******************987 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00055
    TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesLvkalae 369
                   vAL+GD  H + P  GqG    ++D+ +L + l++
  MMETSP1174-20130828|41745_1 357 NVALLGDSVHAMMPNLGQGGCQALEDAFVLKQELES 392
                  69************************9999999975 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.5e-05     0.011       2      46 ..      62     106 ..      61     149 .. 0.83
   2 ?    2.9   0.0      0.03       9.4     136     160 ..     207     231 ..     191     239 .. 0.82
   3 ?   -3.1   0.0         2   6.3e+02     258     283 ..     350     375 ..     331     382 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-05
    TIGR02023   2 dvlviGggpsGaaaaetLaka.gievillerelarikPCGGaiPla 46 
                  +vl+ Ggg++G a a+ Lak   i+v +ler  +  k  GG i la
  MMETSP1174-20130828|41745_1  62 RVLIAGGGVGGLALANSLAKVpHIKVTVLERT-ESFKRFGGPIQLA 106
                  8*******************8357999****9.9*******99754 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.03
    TIGR02023 136 geekksveadvviGaDGakskvake 160
                   ++ k+ve dv iGaDG  s v ++
  MMETSP1174-20130828|41745_1 207 MDSGKTVEGDVLIGADGIWSAVRAT 231
                  556789************9998654 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2
    TIGR02023 258 rkrldservvLvGDaaGlvakasGeG 283
                   k ++++ v+L GD+   + +  G G
  MMETSP1174-20130828|41745_1 350 FKAWTDGNVALLGDSVHAMMPNLGQG 375
                  678999********998888888877 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0018       3     156 ..      63     233 ..      62     247 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.6e-06
    TIGR02032   3 vvvvGaGpaGssaAlrlakkG.lrVlllekkelprekeCggalskraveelelpk..elivnevrkariispngek.veieee.................eeealvidRkefDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklg 156
                  v++ G+G  G ++A +lak   ++V +le++e    k  gg ++ +++    +++  e++  +v  + ++++ ++   +  ++                  +++ vi+R ++ e +   A  +g+  l +  v+  e +++   v++  d+ k+v+++++igAdG  s+v+  ++
  MMETSP1174-20130828|41745_1  63 VLIAGGGVGGLALANSLAKVPhIKVTVLERTE--SFKRFGGPIQLASNALRIIKDmdEPVYDQVMSKFTFTGDKKNgIKDGIRddwyamfdlaspaedrdMPYTGVIERPDLQE-IYMGALPEGVL-LNGDGVVGYERNENGPGVKAVMDSGKTVEGDVLIGADGIWSAVRATMR 233
                  7899******99999999865279*****994..4477788877666555444444365555555555554444444333333566677777777777778999*****99965.67788888887.5555666666666777777777789******************98775 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06    0.0013       5      44 ..      63     104 ..      60     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.2e-06
    TIGR00562   5 vvvvGgGisGLciayalekerpdvelvlvEak...dRvGGkiy 44 
                  v + GgG+ GL++a  l+k  p + ++++E     +R GG i+
  MMETSP1174-20130828|41745_1  63 VLIAGGGVGGLALANSLAKV-PHIKVTVLERTesfKRFGGPIQ 104
                  8899***************9.9999999765422279***998 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.1e-05     0.019      24      56 ..      63      96 ..      54     118 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.1e-05
    TIGR00292 24 viivGaGpsGLtaayylakeg.lkvvvlerklai 56
                 v+i+G+G  GL+ a  lak   +kv vler  ++
  MMETSP1174-20130828|41745_1 63 VLIAGGGVGGLALANSLAKVPhIKVTVLERTESF 96
                 89*****************977********8775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.8e-05     0.012     379     424 ..      60     109 ..      31     126 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-05
    TIGR03997 379 rkkvlvvGgGPaGleaaataarrGh.rvtlleree...elGGqvklaakl 424
                  + +vl++GgG +Gl+ a+  a+  h +vt+ler e   + GG ++la+++
  MMETSP1174-20130828|41745_1  60 PLRVLIAGGGVGGLALANSLAKVPHiKVTVLERTEsfkRFGGPIQLASNA 109
                  357********************9988*****986333689999999864 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00018     0.056       2      32 ..      64      95 ..      63     105 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00018
    TIGR02734  2 vViGaGlgGLAlAirLaaa.Gievtvlekrdk 32
                 ++ G+G+gGLAlA  La+   i+vtvle+ ++
  MMETSP1174-20130828|41745_1 64 LIAGGGVGGLALANSLAKVpHIKVTVLERTES 95
                 678*************986268******9864 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0028      0.89       1      46 [.      61     106 ..      61     122 .. 0.86
   2 ?    2.4   0.0     0.036        11     142     163 ..     208     229 ..     192     237 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0028
    TIGR02028   1 lrvavvgggpagasaaetlaka.giqtfllerkldnakpcggaiplc 46 
                  lrv + ggg  g + a++lak   i+  +ler  ++ k  gg i l 
  MMETSP1174-20130828|41745_1  61 LRVLIAGGGVGGLALANSLAKVpHIKVTVLERT-ESFKRFGGPIQLA 106
                  89******************9736899999986.5688999998875 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.036
    TIGR02028 142 gtkktlevdavigadgansrva 163
                   + kt+e d++igadg  s v 
  MMETSP1174-20130828|41745_1 208 DSGKTVEGDVLIGADGIWSAVR 229
                  56799***********999875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00023     0.071       1      31 [.      63      94 ..      63     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00023
    TIGR03467  1 vvvvGgGlAGLaAAveLara.GvrvtllEarr 31
                 v++ GgG+ GLa A  La+  +++vt+lE+ +
  MMETSP1174-20130828|41745_1 63 VLIAGGGVGGLALANSLAKVpHIKVTVLERTE 94
                 78****************9538******9875 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00035      0.11       1      31 [.      63      94 ..      63      98 .. 0.88
   2 ?   -2.4   0.0       1.4   4.3e+02     183     208 ..     202     227 ..     190     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00035
    TIGR02352  1 vlviGgGviGlsvAveLakrgh.kvtllekde 31
                 vl++GgGv Gl++A  Lak  h kvt+le+ e
  MMETSP1174-20130828|41745_1 63 VLIAGGGVGGLALANSLAKVPHiKVTVLERTE 94
                 79****************987659***99975 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.4
    TIGR02352 183 kvtavktssekvqadqvvlaaGawak 208
                   v av  s ++v+ d ++ a G+w+ 
  MMETSP1174-20130828|41745_1 202 GVKAVMDSGKTVEGDVLIGADGIWSA 227
                  46677777779999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.18s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1706.65
//
Query:       MMETSP1174-20130828|41752_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 2066.45
//
Query:       MMETSP1174-20130828|41753_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1295.45
//
Query:       MMETSP1174-20130828|41755_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-22   77.2   0.4    3.9e-22   76.2   0.3    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.3e-20   71.5   0.2    2.9e-20   70.3   0.2    1.5  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.2e-17   59.9   0.0      3e-17   59.5   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      3e-14   50.5   0.1    5.7e-08   29.7   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.3e-12   45.3   0.3    2.1e-11   41.4   0.3    2.0  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    2.3e-11   40.5   0.0    3.9e-06   23.2   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    5.6e-08   29.3   0.4    1.4e-07   27.9   0.0    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
    8.4e-07   24.7   0.0     0.0016   13.8   0.0    2.2  2  TIGR01054 rgy: reverse gyrase
      2e-06   24.2   0.1    6.1e-05   19.3   0.0    2.4  2  TIGR00580 mfd: transcription-repair coupling factor
     0.0001   18.8   0.0      0.035   10.5   0.0    2.4  2  TIGR00595 priA: primosomal protein N'
     0.0009   16.2   0.0        0.4    7.4   0.0    2.3  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0016   14.6   0.0     0.0065   12.6   0.0    1.9  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
  ------ inclusion threshold ------
      0.035   11.2   0.0      0.055   10.5   0.0    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.3   1.2e-24   3.9e-22       9     339 ..      51     387 ..      41     402 .. 0.77

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 1.2e-24
    TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLll......kgltvvisPLisLmkDqvdqLraaG.veaaalnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredive....kLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrl 339
                  +G+e     q+  i+ ++ grdv+a    G Gk   + + +L +      +   +++sP   L +   +   a G        + +  k   e +++l+ g ++++  +P r+     +++l+  ++++l +Dea  + + G  F+   +++  +   +p +  v+ + at  +ev +  ++     +++  ++   +    ++ +  v+++e k + l +   + + +  +i++++++kv+ l++++++ ++++ a h+ + +k+R+   e+F     +v++at  +G G+d  +v  vi +dlP+n e y    GR+GR G+k  ai + +++D+ +l+ +
  MMETSP1174-20130828|41755_1  51 YGFERPSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFCIGSLQIlekqsnDTQVLIMSPTRELAEQSQKVCLALGdYMNVQCHACIGGKSIGEDIRRLDYG-VQIVSGTPGRVFDMIRRRHLRTRNLKMLVIDEADEMLNRG--FK---EQIYDIYRYLPPTTqVVLVSATMPQEVLDMTKKfmnqPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 387
                  5666666789999********************99999999853222221234467789888765433333333313333445555556666666666655.899999****************************999877..54...5666666666666547777888777765433330000333333333333334455667788888899999999999999**************************************************************************************************************99864 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.2   9.1e-23   2.9e-20       7     341 ..      51     387 ..      44     398 .. 0.73

  Alignments for each domain:
  == domain 1    score: 70.3 bits;  conditional E-value: 9.1e-23
    TIGR00614   7 fglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavv.....s.dgltlvisPLisLmeD.qvlqLkasdisatlLnsaqskeeakevladl..kdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLk......lkkpqvtitsfdRpnlkyeveekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                  +g+e+    q+++i+ ++ grd++     G Gk   + + ++      s d   l++sP + L e  q   L   d       +       k++ +d+   d  ++++  tP +v   ++  ++l  +++l ++++Dea  + + G  f+++    ++ +   P+  v+ ++at  ++v +   k ++      +k+ + t  +  +  +  e ee k + l dl          +  +i+C++++kv+ ++a++++ + +  a h ++ +++r+ + ++f     +v++at  +G G++  +v  vi y+lp + e Y   +GR+GR g k  ++ f +  D+ +lr +
  MMETSP1174-20130828|41755_1  51 YGFERPSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFCIGSLQilekqSnDTQVLIMSPTRELAEQsQKVCLALGDYMNVQCHA---CIGGKSIGEDIrrLDYGVQIVSGTPGRVFDMIR-RRHL-RTRNLKMLVIDEADEMLNRG--FKEQIY--DIYRYLPPTTQVVLVSATMPQEVLDMTKKFMNqpvrvlVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD----TLTITQAVIFCNTKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 387
                  67777778999**********************988877665411221314456788999999875233334333322221111...122345667773234557888889999987633.4566.88999*********999888..666543..44566668889999999999999755555443211111233333333333333333333333344444444....44566669*********************************************************************************************************999875 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   9.4e-20     3e-17      14     356 ..      56     376 ..      50     386 .. 0.85

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 9.4e-20
    TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillv 356
                  p a Q+++++ +  g++ + +   G+GKT    ++sl  l+   k+++  +vl ++P + La++ ++   a  + ++++++  +  G  s  e  r+ +   +i+  Tp  +  ++ +++ ++  ++l+++v+DE  e+l+  RG   ++     r l p+ +vv +sAT+  ++e+ ++  +  ++   +lvk +e   + +++ + + +e+  w+      +l +++++++  +++++F+Nt+ + + l  ++ ea    + +++  Hg + +++R+ + +++++g  r++++T     G+D ++v lvi    p +    + RiGRs+    +   i +v
  MMETSP1174-20130828|41755_1  56 PSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFCIGSLQILE---KQSNDTQVLIMSPTRELAEQSQKVCLALGDYMNVQCHACI--GGKSIGEDIRRLDYGVQIVSGTPGRVFDMIRRRHLRT--RNLKMLVIDEADEMLN--RGFKEQI-YDIYRYLPPTTQVVLVSATM--PQEVLDMTKKFMNQPVRVLVKRDELTLEGIKQFFVA-VEREEWK----FDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTAKMREA----NFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDLPNNRELYIHRIGRSGRFGRKGVAINFV 376
                  6778999**********************999999998777...777889*****************99999999998887665..88889999999999*************9999888765..79************96..8877665.46678999***********8..566666666666655688999988888888888888.9999998....5566677777765.45799*******99876666555....5569999*************************************************************9655555555555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.8e-07   0.00012     261     365 ..      75     183 ..      55     236 .. 0.74
   2 !   29.7   0.0   1.8e-10   5.7e-08     475     533 ..     289     347 ..     274     378 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.8e-07
    TIGR00643 261 lqGdVGsGKTvVavlallavie...sGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekv.....efkeLalviiDE 365
                   q + G+GKT V ++  l+++e   +  qv++m PT  LAeQ  + +  l + ++++     g        e   ++  G +++v GT   +++ +     + ++L++ +iDE
  MMETSP1174-20130828|41755_1  75 AQSQSGTGKTAVFCIGSLQILEkqsNDTQVLIMSPTRELAEQSQKVCLALGDYMNVQCHACIGGKSI---GEDIRRLDYG-VQIVSGTPGRVFDMIrrrhlRTRNLKMLVIDE 183
                  47788*********99999987222568***************999998888777777655554322...2233344433.56777776655554411111455667777777 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.8e-10
    TIGR00643 475 elkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvie 533
                  + k   ++++v  +hg ++++e+++++eeFr++   +L+aT v   G+dv ++++++ +
  MMETSP1174-20130828|41755_1 289 TAKMREANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISY 347
                  34445589999*****************************************9998855 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.072        23       8      46 ..      79     118 ..      72     147 .. 0.72
   2 !   41.4   0.3   6.8e-14   2.1e-11     127     335 ..     178     387 ..     161     400 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.072
    TIGR01587   8 tGyGKteaallwalk.likkqkadkvifalPtratanamy 46 
                   G GKt +  +  l+ l k++   +v+++ Ptr +a+  +
  MMETSP1174-20130828|41755_1  79 SGTGKTAVFCIGSLQiLEKQSNDTQVLIMSPTRELAEQSQ 118
                  799**9998888888455566666777777***9998654 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 6.8e-14
    TIGR01587 127 vliiDEvhayee.ytkalllallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.vdvlitelapids..LiQRlGRlaRygrkir.....enrevyvltel 335
                  +l+iDE++ + +   k+ +  +   l     +++l sAt+p+ +  + +k  ++  + +++++e     ++++ + +++ + ++ +l +l + l    +++i++Nt ++   l  k++e + +  +  +H+ + +k+r       ++e+++  ++v++aT v   +lD+  v ++i+   p ++   i R+GR  R+grk       +n ++ +l+++
  MMETSP1174-20130828|41755_1 178 MLVIDEADEMLNrGFKEQIYDIYRYL-PPTTQVVLVSATMPQEVLDMTKKFMNQPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTAKMREANFT--VSAMHGDMPQKERDAI----MEEFRSGGSRVLIATDVWGRGLDVQqVSLVISYDLPNNRelYIHRIGRSGRFGRKGVainfvKNDDIRILRDI 387
                  68999998655404555565555544.5567899*******6555566666666577788888888888999999999999*****99887766.578999*****************88877..99*******9999877....9***********************6378889988887643379999999999998432335567777776665 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.2e-08   3.9e-06      22     168 ..      41     186 ..      33     235 .. 0.87
   2 !   15.3   0.0     3e-06   0.00095     300     386 ..     293     379 ..     271     389 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.2e-08
    TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.pratalylaPtkalaadqlravkelee.rdvra.atydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechs 168
                  ++d+ + + a G e+p + q ra +    G++v+      +Gk+  + +  l+ l+++   +++l ++Pt+ la+   +++ +l +  +v+  a+  G +  e  + +    ++v   P  +   i + h r     r+l+ +v+de+ +
  MMETSP1174-20130828|41755_1  41 REDLLRGVYAYGFERPSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFCIGSLQILEKQsNDTQVLIMSPTRELAEQSQKVCLALGDyMNVQChACIGGKSIGEDIRRLDYGVQIVSGTPGRVFDMIRRRHLR----TRNLKMLVIDEADE 186
                  678999999**********************************************988357889********************9975555415667777777766677778889999****9999999998....58999*****9975 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3e-06
    TIGR03817 300 aelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvardd 386
                  +e    v+a  +   + +r ++ +++++G  + + at+    G+d+  +  v+    P  +  +  ++Gr+Gr g++ +++   ++d
  MMETSP1174-20130828|41755_1 293 REANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDLPNNRELYIHRIGRSGRFGRKGVAINFVKND 379
                  333446788887788899***********************************************************9998666655 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.93   2.9e+02     360     375 ..      50      65 ..      46      73 .. 0.88
   2 !   27.9   0.0   4.5e-10   1.4e-07     384     541 ..     207     365 ..     197     383 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.93
    TIGR00631 360 eyGfrLPsaldnrPlk 375
                   yGf  Psa++ r +k
  MMETSP1174-20130828|41755_1  50 AYGFERPSAIQQRAIK 65 
                  69*********99876 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 4.5e-10
    TIGR00631 384 kqvvyvsatPgklelekseeevveqiirP.........tgllDPevevrptegqvddlleeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                  +qvv vsat  ++ l+ ++ ++++q +r           g+    v v  +e + d l++   + +   +++++   tk+  + lt  ++e++  v  +h ++   er  i++++r g   vl+  ++   GlD+ +vslv   D        +++  i  iGr+ r
  MMETSP1174-20130828|41755_1 207 TQVVLVSATMPQEVLDMTK-KFMNQPVRVlvkrdeltlEGIKQFFVAVEREEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDL-----PNNRELYIHRIGRSGR 365
                  6888888887776666665.57777776522222221124555667778888888888776555443..456778899***************************************************************98873.....3344445666666665 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00016     0.052      77     213 ..      51     188 ..       9     200 .. 0.66
   2 !   13.8   0.0   5.2e-06    0.0016     137     189 ..     279     332 ..     269     345 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00016
    TIGR01054  77 vGs.ellsiqkmWakrvlknksFaivaPtGvGkttfglvmslflakk...gkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdf..dilittsa..flsknleklk.ykFdlvfvDDvDalL 213
                   G+ ++ +iq+   k +++++   +    G Gkt++  + sl + +k     +v+i+ Pt+ L++q ++    l +  +++      h+ +  k+   + e i++ d+  +i+ +t    f   + ++l+  + +++++D+ D +L
  MMETSP1174-20130828|41755_1  51 YGFeRPSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFCIGSLQILEKqsnDTQVLIMSPTRELAEQSQKVCLALGDYMNVQC-----HACIGGKS---IGEDIRRLDYgvQIVSGTPGrvFDMIRRRHLRtRNLKMLVIDEADEML 188
                  455158899**************99*********98888888765543556799************9988878877666444.....44454443...333344334311344444321133333333444456666666666666 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.2e-06
    TIGR01054 137 kqvaeklsslaeke.glnirvvayhsklstkekkevkeriengdfdilittsaf 189
                   ++ +k++ l+ k  + n +v a+h+ +++ke+  ++e++++g+ ++li+t  +
  MMETSP1174-20130828|41755_1 279 CNTKRKVDWLTAKMrEANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVW 332
                  578899999987752677789******************************865 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.022         7     478     514 ..      78     117 ..      57     215 .. 0.71
   2 !   19.3   0.0   1.9e-07   6.1e-05     686     734 ..     298     346 ..     279     381 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.022
    TIGR00580 478 DvGfGKTEvamrAafkavldg...kQvavlvPTTlLaeQH 514
                    G GKT v     ++ ++++    Qv +++PT  LaeQ 
  MMETSP1174-20130828|41755_1  78 QSGTGKTAVFCIGSLQILEKQsndTQVLIMSPTRELAEQS 117
                  4688999998887777776555569************996 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.9e-07
    TIGR00580 686 riaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiii 734
                   +  +Hg m ++e + +m+eF ++ + vL++T +   G+d+ ++  +i 
  MMETSP1174-20130828|41755_1 298 TVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVIS 346
                  46779*************************************9986664 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0021      0.66       6     149 ..      79     226 ..      75     289 .. 0.68
   2 !   10.5   0.0   0.00011     0.035     295     338 ..     302     345 ..     279     398 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0021
    TIGR00595   6 tGSGKtEvy....lkviekvlakgksvlvLvPEiaLtaqllkrlkerfgsevavlhsklsasekkqawrkvklgeakvviGarSalf.......lPlknLgliivDEEHdssyKqeelpryhardvavvrakkenipvvlgSAtPslesyenvkq 149
                  +G GKt v+    l+++ek   ++ +vl++ P   L+ q +k   +  +   ++ h  ++     +  r++  g +++v G+   +f       l  +nL+++++DE  +   +  +   y+     ++r      +vvl SAt   e +   k+
  MMETSP1174-20130828|41755_1  79 SGTGKTAVFcigsLQILEK-QSNDTQVLIMSPTRELAEQSQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYG-VQIVSGTPGRVFdmirrrhLRTRNLKMLVIDEADEMLNRGFKEQIYD-----IYRYLPPTTQVVLVSATMPQEVLDMTKK 226
                  799******4333344433.345789*************98766665556667788889988888888888876.68999999988843333334457899999999887655544444443.....5666666667777777765555554444 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00011
    TIGR00595 295 sDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvg 338
                        +k+ +a++e+f++g  ++li t +  +Gld ++v+lv 
  MMETSP1174-20130828|41755_1 302 MHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVI 345
                  44444567789******************************974 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0013       0.4      30      74 ..      76     121 ..      56     151 .. 0.75
   2 !    6.4   0.0    0.0026      0.81     298     379 ..     282     362 ..     252     373 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
    TIGR04095  30 kmatGtGktltaLalvskl...aekikslvvvvvvPykhLveqWakea 74 
                  +   GtGkt      +  l   +++++   v+++ P ++L+eq +k +
  MMETSP1174-20130828|41755_1  76 QSQSGTGKTAVF--CIGSLqilEKQSNDTQVLIMSPTRELAEQSQKVC 121
                  456799998554..3333333588999999*************87765 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0026
    TIGR04095 298 erqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGR 379
                  +r++d +++ + +e +++v+      +++eR+ ++++f sg   +l+a      G+Dv ++   +     +n   +i R GR
  MMETSP1174-20130828|41755_1 282 KRKVDWLTAKM-REANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVISYDLPNNRELYIHRIGR 362
                  55666555544.567888888888999*******************************998776666666666668888777 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05    0.0065     223     288 ..     281     346 ..      63     356 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
    TIGR01970 223 irrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
                   +r  ++L+ ++++++ ++  ++G+++ +++d++++   +G  +v +at++    l ++ v +vi 
  MMETSP1174-20130828|41755_1 281 TKRKVDWLTAKMREANFTVSAMHGDMPQKERDAIMEEFRSGGSRVLIATDVWGRGLDVQQVSLVIS 346
                  456667899999999*************************************************95 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017     0.055      69     158 ..     177     273 ..     174     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00017
    TIGR00292  69 kivvekeakelLd.elgiryedegdgyv.vadsvevisklaskaldagvkilnavsveDlilrddtvgvaGvvinwsaielaGlkvD.......pLtlr 158
                  k+ v +ea+e+L+  ++ +  d   ++    + v+v +++  ++ld+  k +n   v  l+ rd+ +++ G+   + a+e+  +k D        Lt+ 
  MMETSP1174-20130828|41755_1 177 KMLVIDEADEMLNrGFKEQIYDIYRYLPpTTQVVLVSATMPQEVLDMTKKFMNQ-PVRVLVKRDE-LTLEGIKQFFVAVEREEWKFDtlcdlydTLTIT 273
                  57777888888851455555565555432567789999*********9998886.6889999999.********************9555444444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.65u 0.21s 00:00:00.86 Elapsed: 00:00:00.50
# Mc/sec: 1071.75
//
Query:       MMETSP1174-20130828|41756_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 992.05
//
Query:       MMETSP1174-20130828|41757_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.2   0.0      0.031   11.0   0.0    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.6e-06     0.031     219     284 ..      15      87 ..       3      91 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.6e-06
    TIGR01930 219 kLakLkpafke......kkgstvtAgNssqlnDGAaalllmseevakelgltpla..rivsaavagvdpeemgl 284
                  +   L++ f+e      ++    +A N + + D A+a +++++e   +l+l+ ++  ++  +++++  pe+m+ 
  MMETSP1174-20130828|41757_1  15 QFVLLNSNFREqmkqekEES-ESHADNETVMDDDASASMISNTEEFTALKLKHFGitEFLRTGNVAALPEIMQA 87 
                  55567778877555443223.69**********************99999998652278999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 417.26
//
Query:       MMETSP1174-20130828|41763_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1174-20130828|41758_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-65  217.7   0.2    5.6e-65  217.2   0.1    1.2  1  TIGR01981 sufD: FeS assembly protein SufD
      1e-34  117.8   0.0    1.6e-34  117.1   0.0    1.2  1  TIGR01980 sufB: FeS assembly protein SufB


Domain annotation for each model (and alignments):
>> TIGR01981  sufD: FeS assembly protein SufD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   0.1   2.7e-68   5.6e-65       4     265 ..     215     483 ..     212     492 .. 0.94

  Alignments for each domain:
  == domain 1    score: 217.2 bits;  conditional E-value: 2.7e-68
    TIGR01981   4 feeglvlyipkgteveepiellfil..keekrvlasrllivveegakvtvlesh.lnleedkalnnlv.eivvgenAsvelikvqnlsatsvllstvrvkleedarvrlvdvelggklsrvelsvdlegesakaeikglyl...adksqhldvetlvehngkntkseilikgvlkdkakavfrGnidvskgakktdarqsnrtLlLsdkaradtkPeLeIdaddVkasHgAtvgqldeeeLFYLrsRGldeaeAkrlliegflkevlee 265
                  +++  ++ +p+g+eve pi +lf++    + ++++ +l++vve+ga++++l s+   +++d++++n   ++ +g++A +++   q+ +  +++++t +v ++ d+ ++l++v +g++ sr++++++++ge+a ++  ++ l   + ++q+ d ++ ++hn+ n+ s++ ++++++ k++ +f+G+i v++ a++td++q +rtLlL+d+a+++ +P+LeI ad Vk++HgAtv+ l  eeLFYL sRG+d++ Ak +l +gfl ev+++
  MMETSP1174-20130828|41758_1 215 LSDCAYIFVPEGVEVERPIQVLFMSsaTLAPSISHTQLVVVVESGASASLLQSYaGVGDGDTYFTNALtTVELGAGATLKHAYAQEAKLGAQHIETMTVSTDGDSIYELTAVCSGSRQSRFNFDSYMNGENALVDTVSVLLsggVGSRQVNDFHSSITHNAVNSFSKQKHRNMVSTKGECIFKGRIAVPQVAQGTDSEQLCRTLLLTDDAKVVMMPSLEIVADQVKCEHGATVSDLSGEELFYLLSRGIDRTAAKGILARGFLTEVIRD 483
                  5778899*****************988888999999******************877888888888777*******************************************************************999993334579999*******************************************************************************************************************953 PP

>> TIGR01980  sufB: FeS assembly protein SufB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   7.9e-38   1.6e-34     162     435 ..     205     483 ..     187     487 .. 0.95

  Alignments for each domain:
  == domain 1    score: 117.1 bits;  conditional E-value: 7.9e-38
    TIGR01980 162 nkfaaLnsavwsgGsfvyvPkgvkveiplqtyfrinseatgqfert..liiadegasvhyieGCsaPvyskeslhaavvelivkedarvkystvqnWsknvynlvtkralveengkleWvegslGskitmkyPssiLkgekaktevlsialak...kgqqkdtGakvihlapetsstiisksiskdggkssyrGlvkiakkakgakssveCdslllddesasdtiPyieveedkvsveheatvskiseeqlfylrsrGlseedakamivsGfvedilke 435
                    f++Ln a  s+ ++++vP+gv+ve p+q  f   ++ +  + +t  +++++ gas + +   +      + + +a+  + +  +a++k++  q    +   + t     + ++  e + +  Gs+ +     s+++ge+a  +++s+ l++   + q +d  + ++h+a +  s+   + + + +g+++++G + + + a+g+ s+  C +lll d+++   +P  e+  d+v+ eh atvs +s e+lfyl srG++   ak ++ +Gf+ +++++
  MMETSP1174-20130828|41758_1 205 AAFGSLNQACLSDCAYIFVPEGVEVERPIQVLFMSSATLAPSISHTqlVVVVESGASASLLQSYAGVGDGDTYFTNALTTVELGAGATLKHAYAQEAKLGAQHIETMTVSTDGDSIYELTAVCSGSRQSRFNFDSYMNGENALVDTVSVLLSGgvgSRQVNDFHSSITHNAVNSFSKQKHRNMVSTKGECIFKGRIAVPQVAQGTDSEQLCRTLLLTDDAKVVMMPSLEIVADQVKCEHGATVSDLSGEELFYLLSRGIDRTAAKGILARGFLTEVIRD 483
                  579*********************************9999999999656789**********99999999999999*99999*********************************************999888999*************99752227899******************************************************************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 2144.82
//
Query:       MMETSP1174-20130828|41764_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1169.05
//
Query:       MMETSP1174-20130828|41766_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1174-20130828|41765_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1360.22
//
Query:       MMETSP1174-20130828|41769_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 361.75
//
Query:       MMETSP1174-20130828|41768_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-68  227.1   6.2    3.1e-68  226.7   4.3    1.1  1  TIGR00496 frr: ribosome recycling factor
     0.0041   13.7   0.2     0.0092   12.6   0.0    1.5  2  TIGR00381 cdhD: CO dehydrogenase/acetyl-CoA synthase, delta subunit


Domain annotation for each model (and alignments):
>> TIGR00496  frr: ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   4.3   1.5e-71   3.1e-68       1     176 []      61     236 .]      61     236 .] 0.99

  Alignments for each domain:
  == domain 1    score: 226.7 bits;  conditional E-value: 1.5e-71
    TIGR00496   1 kekmdkslealkeelskiRtgranpsllDkilveyygaktplkqlasvtvedartlvikpfdkslinaiekailkadlglnPssdGekirvnlPplteErRkelvkvvkkiaEeakvavRnvRrDandkvkklekdkeisEdeekklkeeiqkitdeyikkideilkdkekellev 176
                  +e+m+ks+e+++++l+++Rtgra psllD+i v+yyg +tpl+qla v v   + lv++p+dks++ +ieka++++d+g+ P+++G++ir+++P++te+rRkel k++k + E+ kva+Rn+RrDa+d+vkkl+k ++isEd++k+++e iq +td+y+k++++ +kdke e+++v
  MMETSP1174-20130828|41768_1  61 EERMKKSIESVNQNLNTLRTGRATPSLLDRINVDYYGCETPLNQLAGVSVSSGTSLVVDPYDKSALAEIEKALMESDIGIMPQNNGDVIRLSIPAVTEDRRKELLKTAKSLSEDGKVAIRNIRRDALDQVKKLQKADDISEDNAKDAQESIQSLTDKYVKQVESTMKDKETEIMTV 236
                  589***************************************************************************************************************************************************************************97 PP

>> TIGR00381  cdhD: CO dehydrogenase/acetyl-CoA synthase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.5e-06    0.0092     110     171 ..      30      90 ..      24      96 .. 0.92
   2 ?   -2.6   0.1      0.18   3.7e+02       8      49 ..     171     212 ..     164     229 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.5e-06
    TIGR00381 110 nlpvvtldvfdipmpglakairehfedvledpaewarkavkefGadlvtihlistdpklkdk 171
                  ++pv++ + f + + +  + +r+  +d+l+d  e  +k++     +l t+    + p l d+
  MMETSP1174-20130828|41768_1  30 EMPVIAQNSFKK-RATSNRVVRMEVKDILDDSEERMKKSIESVNQNLNTLRTGRATPSLLDR 90 
                  78********99.9999*********************************999999988876 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.18
    TIGR00381   8 lekaesieieelrlsaeeliltllaaqpqvipktpevkeela 49 
                  l + +++ i+++r +a + + +l  a ++  +++ +++e + 
  MMETSP1174-20130828|41768_1 171 LSEDGKVAIRNIRRDALDQVKKLQKADDISEDNAKDAQESIQ 212
                  555566666777777766677777776666666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 916.16
//
Query:       MMETSP1174-20130828|41770_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-127  420.6   0.0     1e-126  420.4   0.0    1.0  1  TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type
    2.6e-10   37.7   0.1    2.4e-09   34.5   0.1    2.0  1  TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type
     0.0044   13.7   0.2       0.02   11.5   0.1    1.9  1  TIGR03178 allantoinase: allantoinase


Domain annotation for each model (and alignments):
>> TIGR00856  pyrC_dimer: dihydroorotase, homodimeric type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.4   0.0  7.4e-130    1e-126       2     340 ..      12     351 ..      11     352 .. 0.98

  Alignments for each domain:
  == domain 1    score: 420.4 bits;  conditional E-value: 7.4e-130
    TIGR00856   2 ltltrpdDahlhvRegallkavlpktseqfsraivmPnLkpPvttveaaveYrerilkavpa...ftpLmslYltddltpeeleeakekqavravklYPagvttnsaaGvtdldieailevleamekvglvLllhgektsgdidildreelfle.vleklrekfpkLkvvlehittedaiklve.dannrlaatltaqhllltlddllgGglnPhlfCkPilkrekdkkaLlklavsgkpkvflGsDsaPhavskkesaevcaGvysasialealaevfeevnaLenleafvsdfgksfYelkdnlsskkieLvkkeqvipeeialleeklvplraGeklsWsv 340
                  + +t +dD+h h+R+g +l      + +qf rai+mPnLkpPv tv+ a++Yreril+a pa   f+pLm+lY+td++  ee+ +ake+++v +vklYPag+ttns+ Gvtd  + ++ e l+ame+++l+Ll+hge+t+ d+di+dre++f+e  l++l  ++p+L++v+ehitt++ +++v  d+  +la t+ta+hll +++d+l+Gg++Phl+C+Pilk e++++aLl++++sg pk+flG+DsaPh v  k sa++caGv++a  ale++ae+fe+v  L+ leaf+s +g++fY l++n  s ki+L k++  +p++  ++  +lvplraG  l+Ws+
  MMETSP1174-20130828|41770_1  12 ISMTAADDWHHHLRDGLVLGFTASCAAKQFRRAIIMPNLKPPVSTVALALAYRERILSALPArsnFEPLMTLYMTDQMSREEIVRAKESGIVFGVKLYPAGATTNSDSGVTD--LANVHEALAAMEELQLPLLVHGEVTDFDVDIFDREAVFVEtKLKPLVAEYPNLRIVMEHITTKQGVEFVLaDTSGNLAGTVTAHHLLHQRNDMLVGGIKPHLYCLPILKAEQHRQALLSAVTSGSPKLFLGTDSAPHEVGAKCSACGCAGVFTAHAALELYAEAFESVGRLDALEAFCSHNGPDFYRLPRN--SGKITLRKQQKSVPDSYVFGGGNLVPLRAGGMLAWSL 351
                  678999******************************************************99999***********************************************..99**************************************99*************************996367788******************************************************************************************************************9..***********************************97 PP

>> TIGR00857  pyrC_multi: dihydroorotase, multifunctional complex type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   1.8e-12   2.4e-09      67     312 ..      37     274 ..       2     302 .. 0.70

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.8e-12
    TIGR00857  67 iaGGvttvadmPNtkPpldtketl....ekklqrlkkkslvdvllnasvtegnkgke...lteaselkeagav.gelfiddgseildilllkkaleyaaeagvlivlhaedkdliaggvklegrlaaalglkarpeeaEevavarllellkeagkkvhichiStkeslelikkakkqgikiTaeVtPhHLlLseeeiar..ldkllkvnPPLreeedrlaLieglkdgvid.iiAsDHaphtleeKlkevaaappGi 312
                  +a  +  +++mPN kPp+ t +      e++l  l + s  + l+++ +t +   +e    +e + ++ +++  +  +++ +s + d ++ ++al + +e+  ++ +h e  d  +    + ++ a+    k +p +aE              + ++ + hi+tk+++e +    +   ++   Vt hHLl +++++    +++ l   P L+ e+ r+aL+ ++ +g+   ++++D aph +  K+     + +G+
  MMETSP1174-20130828|41770_1  37 AAKQFRRAIIMPNLKPPVSTVALAlayrERILSALPARSNFEPLMTLYMTDQMSREEivrAKESGIVFGVKLYpAGATTNSDSGVTDLANVHEALAAMEELQLPLLVHGEVTDFDVD--IFDRE-AVFVETKLKPLVAEYP------------NLRIVMEHITTKQGVEFVLADTSG--NLAGTVTAHHLLHQRNDMLVggIKPHLYCLPILKAEQHRQALLSAVTSGSPKlFLGTDSAPHEVGAKCSA--CGCAGV 274
                  444577899*********997754111133344445556666666666666666666333333333444444333468888999999999999999999999999999999998887..44432.2233333333333332............3445567************99997..78888********9999765559**************************988468*********999653..344454 PP

>> TIGR03178  allantoinase: allantoinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   1.5e-05      0.02     223     313 ..     171     262 ..      88     321 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
    TIGR03178 223 aketgarvhvvhlssaeaveeiaeakeeGldvtvetCphYllltaeel.eeigtvlkCaPPiRekenqeklwealldgeid.lvvsDhsPctp 313
                  a+  + r+ + h++++++ve + +     l  tv t  h l+  ++ l   i++ l C P ++ +++++ l++a++ g+ + ++ +D +P   
  MMETSP1174-20130828|41770_1 171 AEYPNLRIVMEHITTKQGVEFVLADTSGNLAGTV-TAHHLLHQRNDMLvGGIKPHLYCLPILKAEQHRQALLSAVTSGSPKlFLGTDSAPHEV 262
                  56667899999*********99977666666666.6677777777764257899***********************9876367888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1058.91
//
Query:       MMETSP1174-20130828|41771_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.5   0.0      0.051   11.7   0.0    1.4  1  TIGR02528 EutP: ethanolamine utilization protein, EutP


Domain annotation for each model (and alignments):
>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05     0.051      48      89 ..     127     168 ..     106     178 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
    TIGR02528  48 enrryYsaLlvtaadadvivlvqsatdeesllspgfasifak 89 
                  e r++Y++Ll++ ++  ++ l  +++ +++++++ f+s+ + 
  MMETSP1174-20130828|41771_1 127 EFRQLYRSLLTLVSENGLVDLALDCETSQDMIASAFSSMDVD 168
                  679***********************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 829.06
//
Query:       MMETSP1174-20130828|41772_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   22.3   0.0    5.7e-05   21.1   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein
    3.8e-05   20.2   0.0    5.6e-05   19.7   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.8e-08   5.7e-05      17      89 ..     324     395 ..     315     414 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.8e-08
    TIGR00229  17 aiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGs 89 
                   i  + +  +i++vN+a+  + GY++ee++G+++ +l  e    e+ +++  + e   + +s++++ ++k+G 
  MMETSP1174-20130828|41772_1 324 VITEATRPFRITHVNDAWTNLCGYTSEEACGKTLGMLQGEMTDAETVAKLVSDCE-LGRATSMNVTNYDKQGL 395
                  5666777889***********************9996655544444444433333.23455555544577775 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.7e-08   5.6e-05      25     119 ..     333     430 ..     308     431 .] 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.7e-08
    TIGR02938  25 nilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvl...neaGetthflGmhrdvtelh 119
                   i ++n+a++++ Gy++ee  Gk   +l  + t  e   +l       +  + ++ n  k g ++   lt+ P+    n +G+  h lG+ + + e++
  MMETSP1174-20130828|41772_1 333 RITHVNDAWTNLCGYTSEEACGKTLGMLQGEMTDAETVAKLVSDCELGRATSMNVTNYDKQGLKFDNFLTILPLSsspNGTGDVSHLLGVLKPTCEKF 430
                  5889***************************************9999999************9998888888875333889********999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 1292.89
//
Query:       MMETSP1174-20130828|41773_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       762  (0.185763); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.23s 00:00:01.10 Elapsed: 00:00:00.69
# Mc/sec: 858.89
//
Query:       MMETSP1174-20130828|41774_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1011.92
//
Query:       MMETSP1174-20130828|41776_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 987.79
//
Query:       MMETSP1174-20130828|41777_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 590.07
//
Query:       MMETSP1174-20130828|41775_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 813.05
//
Query:       MMETSP1174-20130828|41780_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 1372.69
//
Query:       MMETSP1174-20130828|41783_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1174-20130828|41785_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1132.55
//
Query:       MMETSP1174-20130828|41784_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 1878.02
//
Query:       MMETSP1174-20130828|41787_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1103.58
//
Query:       MMETSP1174-20130828|41788_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-102  340.3   0.0   3.7e-102  339.7   0.0    1.1  1  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
      3e-17   60.2   0.2      2e-07   27.8   0.0    3.4  3  TIGR00469 pheS_mito: phenylalanine--tRNA ligase
    6.7e-17   58.9   0.0    3.6e-16   56.5   0.0    1.9  2  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase
    6.5e-06   23.2   0.1    1.2e-05   22.4   0.1    1.3  1  TIGR00442 hisS: histidine--tRNA ligase
    8.4e-06   22.5   0.1    1.4e-05   21.8   0.0    1.2  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    0.00086   16.5   0.1     0.0025   15.0   0.1    1.8  1  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.7   0.0  5.3e-105  3.7e-102      11     317 ..     170     491 ..     161     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: 339.7 bits;  conditional E-value: 5.3e-105
    TIGR00468  11 kvkkeeekekliklikevkeeleeeltklkkellkaeaekk.lkfrkydvklpakkiasgklhpltkvieeikeiflelgftvekgpe.vetefynfdaLfiPqdHpaRdmqDtFylkdvad.........avkkaveegketgsrgwryefdeevarkllLRThtta...vqlraleeee..nppirifsigrvfRrdavdatHlpeFhQveglvvdknvslknLkglleeflkklfgetevrfrpsyfPfTepSvEvdvklvegkgWlEvlgaGivrpevlealGiekelkvlafGlgieRlamlkygikdiRdlyendlk 317
                   v k++    +i++  + +    ++ ++l+ke+l ++a+k+  ++r++++++ +++++ g  hpl kv+ e+++i++++gft++  +  ve+ f+nfdaLf+Pq+HpaRd +DtF++k+ a          ++ ka++e++  gs+g+ry+f++e+a k lLRThtta    +l +l+++e   +p+++fsi+rvfR++++d+tHl eFhQveglv+d+ +slk+L+g+++ f++ ++  t++rf+p+++P+TepS+E++ ++  +++W E++++G++rpe+l+++G+ k+++v+a+Gl++eR +m+kygi++iRdl+ ++ +
  MMETSP1174-20130828|41788_1 170 LVMKKKGNVFMIRKHASFRPIYVKQEAALTKEMLVSGAWKQpGHIRPVNLNALGAPVEGGYFHPLLKVRAEFRKILISMGFTEMPTNRwVESSFWNFDALFQPQSHPARDAHDTFFIKEPAStvrvpedyyEKVKAMHEKGGHGSIGYRYDFKREEAFKNLLRTHTTAissQMLYKLANQEggFKPMKYFSIDRVFRNESMDMTHLCEFHQVEGLVADYRLSLKDLIGMIKTFFEAIGI-TKLRFKPAFNPYTEPSMEIFGWMELHQKWSEIGNSGMFRPEMLAPMGLPKDVRVIAWGLSLERPTMIKYGINNIRDLFGHKCD 491
                  455555566677777777777777778889999988888873689***************************************99988******************************444577889999777778888889*************************666667777777788899*****************************************************.6**********************88888**************************************************99865 PP

>> TIGR00469  pheS_mito: phenylalanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00023      0.15      72     100 ..     260     288 ..     231     295 .. 0.82
   2 !   20.2   0.0   6.1e-08   4.1e-05     102     157 ..     329     385 ..     320     406 .. 0.82
   3 !   27.8   0.0   2.9e-10     2e-07     257     334 ..     409     487 ..     393     495 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00023
    TIGR00469  72 vtvqenfdsllipkdhvsrsksdtyyine 100
                   +   nfd+l  p+ h++r+  dt++i e
  MMETSP1174-20130828|41788_1 260 ESSFWNFDALFQPQSHPARDAHDTFFIKE 288
                  55667**********************87 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 6.1e-08
    TIGR00469 102 hllrahtsaheleliskilddsdniks.gflvsaevyrrdeidkthypvfhqaegaa 157
                   llr+ht+a   +++ k  ++    k   ++ +  v+r + +d th   fhq+eg  
  MMETSP1174-20130828|41788_1 329 NLLRTHTTAISSQMLYKLANQEGGFKPmKYFSIDRVFRNESMDMTHLCEFHQVEGLV 385
                  79*******************99999625666678*******************954 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 2.9e-10
    TIGR00469 257 lkvrwvdayfpftapswelevyf..kdewlellGcGlirqevllraGvkqsetiGyafGlGlerlamllfeipdirllws 334
                   k+r+  a+ p+t+ps e+  ++  +++w e+   G++r e+l   G+ +  +   a+Gl ler +m+ + i +ir l+ 
  MMETSP1174-20130828|41788_1 409 TKLRFKPAFNPYTEPSMEIFGWMelHQKWSEIGNSGMFRPEMLAPMGLPKD-VRVIAWGLSLERPTMIKYGINNIRDLFG 487
                  699999*************999633699*******************9776.566899******************8875 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.095        65      44      68 ..     229     253 ..     219     262 .. 0.87
   2 !   56.5   0.0   5.3e-19   3.6e-16     184     340 ..     330     485 ..     319     491 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.095
    TIGR00470  44 GkehplfetierlreaylrlGfsev 68 
                  G  hpl++    +r+  +++Gf e+
  MMETSP1174-20130828|41788_1 229 GYFHPLLKVRAEFRKILISMGFTEM 253
                  778*********************9 PP

  == domain 2    score: 56.5 bits;  conditional E-value: 5.3e-19
    TIGR00470 184 tlrshmtsGwfitlssiadklk..lplklfsidrcfrreqkedasrlmtyfsascvvvdeevsvddGkavaeglleqlGfekfrfrkdekkskyyipetqtevyayhpklkewievatfGvyspialakydi..dvevmnlGlGverlamilygyedvrkm 340
                   lr+h t+     l ++a++     p+k fsidr fr e   d ++l  ++    +v d  +s+ d   + ++++e +G++k+rf++      y  p    e++ +  + ++w e+   G++ p  la  ++  dv v+  Gl +er +mi yg +++r++
  MMETSP1174-20130828|41788_1 330 LLRTHTTAISSQMLYKLANQEGgfKPMKYFSIDRVFRNES-MDMTHLCEFHQVEGLVADYRLSLKDLIGMIKTFFEAIGITKLRFKPAFN--PYTEP--SMEIFGWMELHQKWSEIGNSGMFRPEMLAPMGLpkDVRVIAWGLSLERPTMIKYGINNIRDL 485
                  5788888877777777777653226***********9986.69*******************************************9754..45444..68****************************999334567899******************86 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.7e-08   1.2e-05      42     157 ..     301     413 ..     291     417 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.7e-08
    TIGR00442  42 EktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkk..pfklyyigpvFRyErpqkGRyRqFhQldvevvGsespladaeiialaaelleelglkevtl 157
                  Ek++++++k G  +       Y+f+ ++  +  LR   Ta    ++ +  ++     p+k+++i++vFR+E      +++FhQ++   + ++  l   ++i ++++++e++g+++++ 
  MMETSP1174-20130828|41788_1 301 EKVKAMHEKGGHGSI---GYRYDFKREEAFKNLLRTHTTAISSQMLYKLANQEGGfkPMKYFSIDRVFRNESMDMTHLCEFHQVE--GLVADYRLSLKDLIGMIKTFFEAIGITKLRF 413
                  566666666555532...4569999999999999999999888777665555544459*************************75..5556666666679*************98765 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     2e-08   1.4e-05     239     289 ..     352     406 ..     343     434 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2e-08
    TIGR00499 239 Gle..kvyEigrvFRnEGvdttHnpEFttiElYqa.y.adyedllelteellktl 289
                  G++  k + i+rvFRnE +d+tH  EF  +E   a y  +++dl+ + +++++ +
  MMETSP1174-20130828|41788_1 352 GFKpmKYFSIDRVFRNESMDMTHLCEFHQVEGLVAdYrLSLKDLIGMIKTFFEAI 406
                  55433789***********************877733358899999999999876 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.7e-06    0.0025     103     226 ..     354     483 ..     331     489 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.7e-06
    TIGR02367 103 kpirifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevleelGideyele......adesvvyGdtvdvmkgdlels.savlGpifldrkwgvvk..pwvGlGfGlerllkvredtknvr 226
                  kp++ f i   +r es    hl ef  ++            + l  +ik+++e++Gi + +++      ++ s+     +++ ++  e++ s+++ p +l    g+ k    +  G+ ler  +++ +++n+r
  MMETSP1174-20130828|41788_1 354 KPMKYFSIDRVFRNESMDMTHLCEFHQVEGLVAD--YRLSLKDLIGMIKTFFEAIGITKLRFKpafnpyTEPSMEIFGWMELHQKWSEIGnSGMFRPEMLAPM-GLPKdvRVIAWGLSLERPTMIKYGINNIR 483
                  8************************998754444..4677899999***********8765541111114445544445555555556542555566665443.33220134555666667666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1705.71
//
Query:       MMETSP1174-20130828|41786_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.28
# Mc/sec: 2293.88
//
Query:       MMETSP1174-20130828|41790_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059   10.6   0.0      0.059   10.6   0.0    1.9  2  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI


Domain annotation for each model (and alignments):
>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.4e-05     0.059      37      82 ..      42      88 ..      36     105 .. 0.85
   2 ?   -0.9   1.6     0.045   1.9e+02       5      34 ..     123     152 ..     120     154 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.4e-05
    TIGR02872 37 epvvefLekklkl.kralavlivlllfliiivllltilvtelvkeli 82
                 +p  ++Lekkl++ k+++a    +l++l++++++ + lv +lv  ++
  MMETSP1174-20130828|41790_1 42 NPHLDMLEKKLNMdKHIIAAGAAFLFILLVFFGIGMGLVCNLVAMVY 88
                 68999********7778899999999999999999999999988766 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.045
    TIGR02872   5 livlivilvliiyfalplllPfviAlilal 34 
                  +i  i++++ +++ ++ +++Pf +A+  a 
  MMETSP1174-20130828|41790_1 123 VIFGIITVFEAFLETILYMVPFYFAFKGAF 152
                  677788888899999999****99996665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 852.43
//
Query:       MMETSP1174-20130828|41789_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1066.07
//
Query:       MMETSP1174-20130828|41794_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-07   26.3   1.6      0.025   10.8   0.1    3.3  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    3.2e-06   25.3   0.4      0.041   12.0   0.0    3.3  3  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
    0.00014   19.5   0.4       0.81    7.3   0.0    3.5  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    0.00017   17.9   0.2       0.08    9.1   0.0    2.8  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    0.00034   18.2   0.5        0.6    7.7   0.0    3.5  3  TIGR01008 rpsC_E_A: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0046       3.8     556     589 ..      61      94 ..      55     103 .. 0.87
   2 !    9.0   0.0   0.00011     0.089     555     587 ..     162     194 ..     155     207 .. 0.88
   3 !   10.8   0.1   3.1e-05     0.025     554     592 ..     336     374 ..     323     413 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0046
    TIGR03591 556 kinkdkireviGkgGkvireiieetgakidiedd 589
                   + ++  +++iGk+G++i e+++++ga+i+++++
  MMETSP1174-20130828|41794_1  61 LVTNNVAGSLIGKKGATIGELQSTSGARIKLSQS 94 
                  566777789********************99875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00011
    TIGR03591 555 ikinkdkireviGkgGkvireiieetgakidie 587
                  + i+ +  + +iG+gG++i+e+ e++ga+i+++
  MMETSP1174-20130828|41794_1 162 FVIPSKSAGVLIGQGGANIKELHEKSGARIQLH 194
                  5688888899********************976 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 3.1e-05
    TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidieddGtv 592
                  ++ ++   i++++G+gG+ ++e+++ +ga+i+i++ G+ 
  MMETSP1174-20130828|41794_1 336 QLPVHDAMIGAILGRGGSRLNELQQISGARISISQRGEF 374
                  56789999***************************9863 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0029       2.3      33      69 ..      54      92 ..      44      98 .. 0.80
   2 !   12.0   0.0     5e-05     0.041      37      69 ..     162     194 ..     150     219 .. 0.82
   3 ?    3.3   0.0     0.025        21      39      69 ..     339     369 ..     333     402 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0029
    TIGR01952 33 drvv..fvvkkgemgvAiGkgGanvkkveellgkkvelv 69
                 ++v+  ++v+++  g  iGk+Ga++ +++ + g +++l 
  MMETSP1174-20130828|41794_1 54 EKVClkLLVTNNVAGSLIGKKGATIGELQSTSGARIKLS 92
                 56663358999999*****************99999985 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5e-05
    TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvelv 69 
                  fv+ + + gv iG+gGan+k+++e+ g +++l 
  MMETSP1174-20130828|41794_1 162 FVIPSKSAGVLIGQGGANIKELHEKSGARIQLH 194
                  9****************************9985 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.025
    TIGR01952  39 vkkgemgvAiGkgGanvkkveellgkkvelv 69 
                  v++  +g+ +G+gG++ +++++  g ++++ 
  MMETSP1174-20130828|41794_1 339 VHDAMIGAILGRGGSRLNELQQISGARISIS 369
                  5566789999999999999999999999875 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.018        15       8      35 ..      66      93 ..      59     121 .. 0.68
   2 !    7.3   0.0   0.00099      0.81       4      36 ..     164     196 ..     161     236 .. 0.81
   3 !    5.4   0.0    0.0036         3     101     138 ..     345     392 ..     336     415 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.018
    TIGR03665  8 rigvliGkkgevkkeieektkvkleids 35
                   g liGkkg +  e++++ ++++++ +
  MMETSP1174-20130828|41794_1 66 VAGSLIGKKGATIGELQSTSGARIKLSQ 93
                 4455556666666666555555555544 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00099
    TIGR03665   4 ipkdrigvliGkkgevkkeieektkvkleidse 36 
                  ip++  gvliG++g + ke+ ek ++++++  +
  MMETSP1174-20130828|41794_1 164 IPSKSAGVLIGQGGANIKELHEKSGARIQLHAR 196
                  899999******************999998765 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0036
    TIGR03665 101 griIGeeGktrkiieeltgvkisvyg..........ktvsiiGeieqv 138
                  g i+G++G   + +++++g++is+++          +tv+i G+ +q+
  MMETSP1174-20130828|41794_1 345 GAILGRGGSRLNELQQISGARISISQrgefipgtqnRTVTITGSQQQA 392
                  667788887777888888888877652233333333455555555555 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.002       1.6     585     621 ..      62      98 ..      42     105 .. 0.77
   2 ?   -0.1   0.0     0.061        50     584     614 ..     163     193 ..     152     199 .. 0.89
   3 !    9.1   0.0   9.8e-05      0.08     580     625 ..     332     379 ..     320     400 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.002
    TIGR02696 585 ipvdkigevigpkgkvinsiqdetgaeisieddgtvy 621
                  +  +  g +ig kg +i ++q  +ga i + +    +
  MMETSP1174-20130828|41794_1  62 VTNNVAGSLIGKKGATIGELQSTSGARIKLSQSNDFF 98 
                  4445679*********************998776665 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.061
    TIGR02696 584 kipvdkigevigpkgkvinsiqdetgaeisi 614
                   ip +  g +ig  g  i ++++++ga i +
  MMETSP1174-20130828|41794_1 163 VIPSKSAGVLIGQGGANIKELHEKSGARIQL 193
                  5899999********************9986 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 9.8e-05
    TIGR02696 580 viavkipvdk..igevigpkgkvinsiqdetgaeisieddgtvyigaa 625
                   +++++pv+   ig ++g  g  +n++q+ +ga isi + g    g++
  MMETSP1174-20130828|41794_1 332 TVTLQLPVHDamIGAILGRGGSRLNELQQISGARISISQRGEFIPGTQ 379
                  4678999974449*************************9997554544 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.04        33      43      66 ..      61      84 ..      50      94 .. 0.82
   2 !    7.7   0.0   0.00073       0.6      35      66 ..     155     186 ..     149     198 .. 0.89
   3 !    4.4   0.1    0.0073         6      48      67 ..     343     362 ..     330     407 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.04
    TIGR01008 43 iifaerpglviGrrGrrireltel 66
                 ++  + +g +iG++G++i el+ +
  MMETSP1174-20130828|41794_1 61 LVTNNVAGSLIGKKGATIGELQST 84
                 566667899***********9975 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00073
    TIGR01008  35 ktplgtkviifaerpglviGrrGrrireltel 66 
                   t+++ + +i ++ +g++iG++G+ i+el e+
  MMETSP1174-20130828|41794_1 155 DTTMQSRFVIPSKSAGVLIGQGGANIKELHEK 186
                  58899999*********************987 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0073
    TIGR01008  48 rpglviGrrGrrireltell 67 
                    g ++Gr+G+r++el+++ 
  MMETSP1174-20130828|41794_1 343 MIGAILGRGGSRLNELQQIS 362
                  5689************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 1625.55
//
Query:       MMETSP1174-20130828|41797_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 725.94
//
Query:       MMETSP1174-20130828|41798_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1174-20130828|41801_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 913.22
//
Query:       MMETSP1174-20130828|41800_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1404.50
//
Query:       MMETSP1174-20130828|41799_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.4   0.0     0.0013   15.6   0.0    1.3  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
  ------ inclusion threshold ------
      0.018   11.9   0.0      0.027   11.3   0.0    1.2  1  TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog
      0.047   10.9   0.0       0.11    9.6   0.0    1.6  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.5e-07    0.0013     236     291 ..     355     413 ..     317     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.5e-07
    TIGR01205 236 vipaelseeeeekikelalkayka...lgcrglaRvDfflekegeiylnEiNtiPGmta 291
                  v   e+ ++ +e+i++++l  y++   ++ ++l  +D++++++g+  ++EiN  PG t+
  MMETSP1174-20130828|41799_1 355 VTAQEMWDNTKEQIEKVMLASYEHyfgVQGHQLLGIDMIISNDGTPHVLEINRSPGTTE 413
                  4444588899999999999888874336788999*******99**************98 PP

>> TIGR02291  rimK_rel_E_lig: alpha-L-glutamate ligase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05     0.027     240     275 ..     379     414 ..     350     435 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2e-05
    TIGR02291 240 ayelvGlGylGvdvvldkekGplvlelnarpGlaiq 275
                   + + G   lG+d+++ ++  p vle+n  pG +  
  MMETSP1174-20130828|41799_1 379 YFGVQGHQLLGIDMIISNDGTPHVLEINRSPGTTED 414
                  456788899***********************8654 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.2   1.6e+03     199     218 ..     136     155 ..     121     164 .. 0.62
   2 ?    9.6   0.0   8.2e-05      0.11     230     257 ..     384     411 ..     363     416 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1.2
    TIGR00768 199 frsNlarGgkaekcelteei 218
                     N++r g+  +c++ +e+
  MMETSP1174-20130828|41799_1 136 IFKNISRDGNHPRCFVVPEQ 155
                  44455555555555555444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 8.2e-05
    TIGR00768 230 gldvagiDllesedkgllvlEvNasvef 257
                  g +++giD++ s+d+   vlE+N s++ 
  MMETSP1174-20130828|41799_1 384 GHQLLGIDMIISNDGTPHVLEINRSPGT 411
                  67899********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2010.30
//
Query:       MMETSP1174-20130828|41802_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   23.4   0.1    2.2e-05   22.7   0.1    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    0.00035   18.6   0.0    0.00061   17.8   0.0    1.3  1  TIGR02181 GRX_bact: glutaredoxin 3
    0.00036   18.6   0.0    0.00062   17.8   0.0    1.4  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
      0.002   15.8   0.1     0.0031   15.1   0.1    1.2  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
     0.0023   16.0   0.1     0.0037   15.3   0.1    1.3  1  TIGR02180 GRX_euk: glutaredoxin
     0.0027   15.5   0.0     0.0047   14.7   0.0    1.4  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
     0.0044   14.8   0.1     0.0086   13.9   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
  ------ inclusion threshold ------
      0.018   12.4   0.0      0.048   10.9   0.0    1.6  2  TIGR02661 MauD: methylamine dehydrogenase accessory protein MauD
      0.033   12.1   0.0      0.054   11.4   0.0    1.3  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.041   12.2   0.1      0.085   11.2   0.0    1.6  1  TIGR02200 GlrX_actino: glutaredoxin-like protein


Domain annotation for each model (and alignments):
>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   5.4e-08   2.2e-05       2      58 ..      75     130 ..      74     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.4e-08
    TIGR02196   2 vkvYttpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivige 58 
                  +k++t+++C  C k+k+ L++ gia+  + v+   +  ee  +k++   +Pv+ i++
  MMETSP1174-20130828|41802_1  75 IKLFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHEEWFEKYK-FDIPVLHIND 130
                  89*************************9999999999999888886.5689988875 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06   0.00061       1      58 [.      75     130 ..      75     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-06
    TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigd 58 
                  ++++tk+ C  c++ k +L+e g++ + + vd  +e +ee +e+ k    +P ++i+d
  MMETSP1174-20130828|41802_1  75 IKLFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHEEWFEKYK--FDIPVLHIND 130
                  689************************************9999985..7777777775 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06   0.00062       1      56 [.      75     130 ..      75     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-06
    TIGR02194   1 itvysknnCvqCkatkkaleeqniafeeinideqpeavdyvkelGfravPVivaeg 56 
                  i++++k++C  C+ +k +l+e +ia+    +d  +e  +   e     +PV+ +++
  MMETSP1174-20130828|41802_1  75 IKLFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHEEWFEKYKFDIPVLHIND 130
                  789****************************9888876655554444688888865 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   7.6e-06    0.0031      23      76 ..      75     122 ..      69     131 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.6e-06
    TIGR02187  23 lvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykve 76 
                  +++Ft+   e+C  C+++k +l+e   ++ +l ++i d     + e +ekyk +
  MMETSP1174-20130828|41802_1  75 IKLFTK---EECTLCDKVKDVLQECGIAHTLLAVDITDEG---HEEWFEKYKFD 122
                  556665...78*************************9987...7899****987 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   9.1e-06    0.0037       3      41 ..      77     115 ..      75     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.1e-06
    TIGR02180   3 vfsKsyCpYckkakelLkklkvkkalevveldklengse 41 
                  +f K  C  c k+k++L++  + ++l  v++++  +++ 
  MMETSP1174-20130828|41802_1  77 LFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHEEW 115
                  7*****************999**9999999999877765 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05    0.0047      12      48 ..      77     113 ..      69     157 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-05
    TIGR02189  12 ifskssCClshvvkrLllelGvnPavveldkeaeake 48 
                  +f+k+ C l+  vk +l+e G+  ++  +d ++e++e
  MMETSP1174-20130828|41802_1  77 LFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHE 113
                  79***********************999997655544 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.1e-05    0.0086       9      36 ..      74     101 ..      67     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.1e-05
    TIGR02190   9 svsvftkpGCPfCakakavLkekGldfe 36 
                   + +ftk  C  C k k+vL+e G+++ 
  MMETSP1174-20130828|41802_1  74 VIKLFTKEECTLCDKVKDVLQECGIAHT 101
                  5889********************9875 PP

>> TIGR02661  MauD: methylamine dehydrogenase accessory protein MauD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012     0.048      66     117 ..      63     114 ..      44     130 .. 0.78
   2 ?   -1.9   0.0         1   4.3e+02     128     154 ..     163     189 ..     153     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00012
    TIGR02661  66 riggaealgrptllmftapscpvcdkllpiiksiaraeeidvvlisdgapee 117
                      +  +  p + +ft   c +cdk+  +++  + a  +  v i+d  +ee
  MMETSP1174-20130828|41802_1  63 TADPSDNPAAPVIKLFTKEECTLCDKVKDVLQECGIAHTLLAVDITDEGHEE 114
                  55556677889999*********************99998888777755554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1
    TIGR02661 128 geiryvvsaevgmafqvgkipygvlld 154
                  +  +yv+ a    +fq + + +   ld
  MMETSP1174-20130828|41802_1 163 NAAKYVMVARFTNRFQANFVMFYPKLD 189
                  567899999999999988877666665 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013     0.054       3      63 ..      75     132 ..      74     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
    TIGR00411   3 ielftsPtCPyCPkakkvveevakeegdkvevekinv.medlkkaleyGimavPaivingkv 63 
                  i+lft   C  C k k     v +e g +   + +++ +e++++ +e     +P + in+ +
  MMETSP1174-20130828|41802_1  75 IKLFTKEECTLCDKVKD----VLQECGIAHTLLAVDItDEGHEEWFEKYKFDIPVLHINDIY 132
                  89**********98665....55788999999999973678888888888899999999976 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021     0.085       2      38 ..      75     112 ..      74     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00021
    TIGR02200   2 vtvYatswCgyCaslkrtLdkdgaeYevvdie.kdeea 38 
                  +++++++ C  C ++k +L++ g++ +   ++  de+ 
  MMETSP1174-20130828|41802_1  75 IKLFTKEECTLCDKVKDVLQECGIAHTLLAVDiTDEGH 112
                  678999********************987776234444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 932.17
//
Query:       MMETSP1174-20130828|41804_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 200.85
//
Query:       MMETSP1174-20130828|41805_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 843.58
//
Query:       MMETSP1174-20130828|41806_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1174-20130828|41807_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1174-20130828|41803_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-95  316.2   0.0    8.2e-95  316.0   0.0    1.1  1  TIGR00442 hisS: histidine--tRNA ligase
    6.8e-55  184.2   0.0      1e-54  183.6   0.0    1.3  1  TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
    0.00011   19.6   0.1     0.0079   13.5   0.0    2.4  2  TIGR00462 genX: EF-P lysine aminoacylase GenX
    0.00019   18.3   0.1     0.0003   17.7   0.0    1.3  1  TIGR00418 thrS: threonine--tRNA ligase
     0.0012   15.1   0.3     0.0047   13.1   0.2    1.8  1  TIGR00459 aspS_bact: aspartate--tRNA ligase
  ------ inclusion threshold ------
      0.037   10.7   0.1        1.1    5.8   0.0    2.1  2  TIGR00409 proS_fam_II: proline--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0   0.0   1.2e-97   8.2e-95       3     405 ..      69     490 ..      67     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 316.0 bits;  conditional E-value: 1.2e-97
    TIGR00442   3 prGtrDllpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkkpfklyyigpvFRyErpq..kGRyRqFhQldvevvGsesp.ladaeiialaaelleelglkevtleinslgilegrlels.....yreallryldkkldklgedsvrrleknplrildskaeklkellke..apkildf.lke...........esleeleelkelLkalgi.kyk.idpslvRGLdYYtgtvFEvvldelg.aqgsvcgGGrYDnLveelgg..ekvpavGfaiGieRllllleeeglleeekkkadvlvvaldeeaeaealklaeklrkagirvevdleg..kklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeqeeva 405
                   +G rD+lp ++++rq+ ++ ir+vf+++g  ei+tP++E  e+l+ k+Ge+t    k +Y++ d+gg+ laLR++lT+p++R++++++      +k+++i++v+R+++pq  +GRyR+F+Q+d+++ G+  p  adae+i++a+e+l++l + ++++++n++ +l++++++s     + +++++++dk ldk   ++v+r   +  ++ ++ a+k+  +++   ap+ l+  l +           e++++l  l ++L+a+g  +y+ +d+sl+RGLdYYtg+++E+v ++ g a gs+++GGrYD+Lv+ +++  ++vp vG++iG+eR+++++e++ l+e+   +++++v+++++    e +kla+ l + gi++e+  ++   ++k+ql++a +k++++++++ge+e+++g  ++k+l++ ++ +v+
  MMETSP1174-20130828|41803_1  69 AKGARDFLPGQMKVRQQALTSIRQVFDEHGAVEIDTPVFELKETLTGKYGEDT----KLIYDLADQGGELLALRYDLTVPFARFLAMHSV---GNIKRFHIAKVYRRDNPQlaRGRYREFYQCDFDIAGTYLPmVADAEVITVATEILSTLPIGSFVVKLNHRVLLDSIFDISgvpadKFRTICSAVDK-LDKEPWSEVKREMVEDKGLAEEVADKIGTFVTRlgAPRELHSiLVKekvfgdhpgaaEAMASLALLWDYLEAMGSlDYVsFDLSLARGLDYYTGVIYECVFTGGGpAVGSIAAGGRYDKLVGMFNEngQQVPCVGVSIGVERVFAIMESKALAEQ--CSVNCFVASVGKGMLLERMKLAKLLWADGISAEFFQNKenPNMKAQLEHALTKRIPIMLVIGESEVADGVTKVKELAKSTEATVQ 490
                  69*************************************************95....799***************************966...669***************888******************869************************************444456699999999999.77777777777555679****************987555554254479*************************7776666**********************8888******************86559******************77777777..*********************************986663369***********************************99998876 PP

>> TIGR00443  hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   1.5e-57     1e-54       1     313 [.      73     398 ..      73     399 .. 0.90

  Alignments for each domain:
  == domain 1    score: 183.6 bits;  conditional E-value: 1.5e-57
    TIGR00443   1 rdvlpeeaakkeeierkleklfaswGYqeietPvlEylevllaklgdleekvfklvdskgrvLaLRpdmTasiaRavstrlkdqelplRlsyagkvfraeeke..rgksreftQvGvEliGa.ksleaDaEvialaleaLealglkelkvelGhvglvrelleelglpeeareelrealerkdlvale....elvaeaelkeeakekllaLprlrGkpeevleel..aklagses.akaaldeLeavlellealgveeevslDlglvrglhYYtGliFevyaeglgaa...lagGGRYDeLlkaf...gealpavGfalnlerllealt 313
                  rd+lp +++ +++  + ++++f ++G  ei+tPv+E  e+l+ k g++ + ++ l d++g++LaLR d+T + aR+++ +  ++    R+   +kv+r+++++  rg++ref+Q    + G+  ++ aDaEvi++a+e+L++l + ++ v+l h  l++++++ +g+p ++ +++ +a +++d +  +    e+v++++l ee+++k+ ++++  G p+e+ + l  +k++g++  a++a++ L  ++++lea+g  ++vs+Dl+l+rgl+YYtG+i+e + +g g a   +a GGRYD+L++ f   g+++p vG ++++er+ ++++
  MMETSP1174-20130828|41803_1  73 RDFLPGQMKVRQQALTSIRQVFDEHGAVEIDTPVFELKETLTGKYGEDTKLIYDLADQGGELLALRYDLTVPFARFLAMH--SVGNIKRFH-IAKVYRRDNPQlaRGRYREFYQCDFDIAGTyLPMVADAEVITVATEILSTLPIGSFVVKLNHRVLLDSIFDISGVPADKFRTICSAVDKLDKEPWSevkrEMVEDKGLAEEVADKIGTFVTRLGAPRELHSILvkEKVFGDHPgAAEAMASLALLWDYLEAMGSLDYVSFDLSLARGLDYYTGVIYECVFTGGGPAvgsIAAGGRYDKLVGMFnenGQQVPCVGVSIGVERVFAIME 398
                  8***************************************************************************9977..666666765.689999999552267**************736889*************************************************999999987766666899***********************99955444224455554449******************************************999766654122899******************************99875 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.2e-05    0.0079       2      43 ..      81     123 ..      80     281 .. 0.68
   2 ?    3.8   0.0      0.01         7     277     295 ..     382     400 ..     371     408 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
    TIGR00462   2 kkrakllaaiRafFaergvlEvetpllsea.pvtdvhlealkt 43 
                  k r++ l++iR+ F+e+g +E++tp+++ + + t  + e  k 
  MMETSP1174-20130828|41803_1  81 KVRQQALTSIRQVFDEHGAVEIDTPVFELKeTLTGKYGEDTKL 123
                  6799*********************987441344444444444 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.01
    TIGR00462 277 ecsGvAlGlDRLlmlalga 295
                  +c Gv++G++R+++++  +
  MMETSP1174-20130828|41803_1 382 PCVGVSIGVERVFAIMESK 400
                  5***********9998765 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.3e-07    0.0003     489     562 ..     424     499 ..     383     502 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.3e-07
    TIGR00418 489 kkvaeklkkegirvdvddrne..klgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvr 562
                   k+a+ l + gi +++ +++e  ++++++ +a +++ip++lv+G++Ev +    v+e ++  +++++  ++ + ++
  MMETSP1174-20130828|41803_1 424 MKLAKLLWADGISAEFFQNKEnpNMKAQLEHALTKRIPIMLVIGESEVADGVTKVKELAKSTEATVQRGDVTQYIK 499
                  6889999999*****987776225777788999*****************9999*999999999988887777766 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   6.9e-06    0.0047     138     246 ..      79     197 ..      72     222 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.9e-06
    TIGR00459 138 rlklRskvtkavRnflddkgFleietPiLt.katPeG...ardyLvPsRvk.kgefyaLpqsPql.fkqLL.mvs.GvdkYyqiarcfRDe..DlRaDRqPeftqiDlemsFlnqedvm 246
                  ++k R++    +R+++d++g +ei+tP+   k t  G       L+       ge  aL     + f   L m s G  k + ia+++R +   l   R  ef q D++++ +  ++v 
  MMETSP1174-20130828|41803_1  79 QMKVRQQALTSIRQVFDEHGAVEIDTPVFElKETLTGkygEDTKLIYDLADqGGELLALRYDLTVpFARFLaMHSvGNIKRFHIAKVYRRDnpQLARGRYREFYQCDFDIAGTYLPMVA 197
                  799************************98436666551113344555544436899999876443366655144445668899999998651347788999999999999866555554 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0016       1.1      35     106 ..      68     137 ..      61     140 .. 0.89
   2 ?    2.5   0.1     0.016        11     499     566 ..     430     499 ..     416     501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0016
    TIGR00409  35 lasGlynylPlalrvlekvenivreemnkagaievllpalqsaelWqesgRwdkygeellrlkDrkerefvL 106
                  +a G  ++lP  ++v ++    +r+  +++ga+e+  p+++ +e+   +g++ + ++ +  l D+++  ++L
  MMETSP1174-20130828|41803_1  68 IAKGARDFLPGQMKVRQQALTSIRQVFDEHGAVEIDTPVFELKET--LTGKYGEDTKLIYDLADQGGELLAL 137
                  5678889**********************************9997..5899999999999999988876655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.016
    TIGR00409 499 lkakgvdvllDdrneraGvkfrdseliG..iplavvvGkksldnkeiEvkkrrngekqlikkaelkevle 566
                  l a+g+ + + + +e + +k++  +++   ip+++v+G++++ ++   vk+ ++  + +++  +++++++
  MMETSP1174-20130828|41803_1 430 LWADGISAEFFQNKENPNMKAQLEHALTkrIPIMLVIGESEVADGVTKVKELAKSTEATVQRGDVTQYIK 499
                  556677777778888888888888887544899*********************9999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1885.08
//
Query:       MMETSP1174-20130828|41812_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1921.61
//
Query:       MMETSP1174-20130828|41809_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 926.99
//
Query:       MMETSP1174-20130828|41815_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 260.10
//
Query:       MMETSP1174-20130828|41813_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-36  123.2   7.1    4.5e-17   60.0   0.0    3.6  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.8e-35  118.9   3.1    1.8e-18   64.5   0.3    3.4  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.9e-35  119.4   2.4    5.4e-17   59.9   0.0    3.2  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.8e-34  117.3   0.1    6.2e-15   53.3   0.1    4.0  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.3e-33  113.8   0.3    5.4e-18   63.0   0.0    2.7  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.2e-33  113.2   0.0    2.8e-18   64.1   0.0    3.1  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.5e-32  109.9   3.0    7.5e-16   56.0   0.2    3.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      7e-31  105.3   0.0    7.8e-15   52.9   0.0    3.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.8e-31  104.9   0.5    3.3e-16   57.4   0.2    3.5  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-29  101.3   1.4    9.8e-16   55.9   0.0    3.1  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.7e-29   99.7   1.9    4.1e-16   57.1   0.0    3.1  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      1e-28   98.3   0.4    2.7e-13   47.9   0.0    3.3  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.2e-28   96.6   1.6    2.1e-10   38.3   0.0    3.9  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.2e-28   96.4   0.4    1.8e-15   54.9   0.1    4.0  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.4e-28   95.0   3.5    6.5e-14   49.7   0.1    3.6  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.1e-27   93.9   1.6    4.9e-09   33.8   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.4e-26   88.9   0.3    9.7e-16   55.0   0.0    3.2  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-25   88.2   1.2    9.3e-12   42.1   0.0    3.7  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.7e-25   87.4   0.9    1.1e-08   31.9   0.0    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.8e-25   86.9   3.8    3.4e-14   50.5   0.2    3.6  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.5e-25   86.6   0.3    1.5e-13   48.3   0.1    3.4  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.7e-25   86.8   2.7    7.4e-14   49.8   0.0    3.5  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-24   84.9   0.9    1.1e-11   42.5   0.0    3.4  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.5e-24   84.6   2.5    1.5e-09   35.6   0.0    3.9  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    7.8e-23   78.9   0.0    3.7e-11   40.8   0.0    3.3  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      4e-22   76.8   4.9    2.8e-10   37.9   0.2    3.6  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.8e-22   76.3   2.2    8.4e-10   36.6   0.2    3.8  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.4e-22   75.9   3.1    4.5e-11   40.4   0.1    4.0  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      4e-21   73.1   0.1    2.3e-11   41.0   0.0    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    5.4e-21   73.1   3.0    7.3e-11   40.0   0.3    3.3  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.6e-21   72.5   3.0    3.8e-10   37.5   0.2    2.9  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.1e-20   71.8   0.6    8.1e-09   32.9   0.0    4.1  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.8e-20   70.6   0.2    7.1e-09   33.3   0.1    3.9  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.5e-20   70.3   3.0    4.4e-14   50.2   0.3    2.8  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.1e-19   68.2   4.0    5.7e-08   29.5   0.1    3.5  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.6e-19   67.8   2.5      5e-09   33.1   0.1    3.3  2  TIGR00955 3a01204: pigment precursor permease
    1.3e-18   64.6   0.5    6.2e-10   36.0   0.1    3.0  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      6e-18   62.8   0.4    6.1e-07   26.5   0.0    3.8  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    7.4e-18   62.2   0.1    1.4e-09   34.8   0.0    3.4  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    8.2e-18   61.8   0.3    4.7e-10   36.1   0.0    3.2  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.1e-17   61.8   0.2    7.9e-07   25.9   0.0    3.4  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.1e-16   56.8   0.9    2.1e-07   27.6   0.0    3.3  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.7e-16   57.2   0.0    8.6e-06   23.2   0.0    4.1  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.4e-16   56.1   0.1    8.4e-09   32.3   0.0    2.5  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.4e-15   54.6   0.3    2.7e-06   24.0   0.0    3.6  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-14   52.1   1.8    4.8e-08   30.6   0.3    3.7  3  TIGR01978 sufC: FeS assembly ATPase SufC
    6.9e-14   47.5   0.1    2.9e-06   22.2   0.0    3.0  3  TIGR01257 rim_protein: rim ABC transporter
    1.1e-13   48.7   0.7    2.5e-05   21.2   0.1    3.9  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    7.7e-13   45.7   0.2    1.4e-05   21.8   0.0    3.2  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.3e-12   43.8   0.5    2.4e-07   27.2   0.0    3.0  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.4e-12   43.2   0.1    6.2e-06   22.5   0.0    2.2  2  TIGR00630 uvra: excinuclease ABC subunit A
    4.6e-12   42.8   2.7     0.0002   17.6   0.0    3.9  3  TIGR00958 3a01208: antigen peptide transporter 2
    9.1e-12   41.2   3.7    0.00034   16.1   0.0    3.8  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    7.7e-10   34.7   0.1      4e-05   19.0   0.0    2.1  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    6.8e-09   32.6   0.0     0.0028   14.1   0.0    3.2  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.1e-08   29.9   1.0     0.0012   14.2   0.1    3.5  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.5e-07   26.9   1.7    1.6e-06   25.6   1.1    1.7  1  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
      2e-06   25.1   0.2     0.0025   14.9   0.0    2.4  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    2.2e-05   21.1   4.5    3.2e-05   20.6   3.1    1.2  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
    5.3e-05   21.2   0.4      0.078   10.8   0.0    2.6  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    8.1e-05   20.5   5.5    0.00015   19.6   3.8    1.4  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    0.00018   19.0   2.0    0.00038   17.9   1.4    1.6  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
    0.00031   18.6   2.2    0.00055   17.8   1.6    1.4  1  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
    0.00046   18.1   1.2     0.0015   16.5   0.2    2.4  1  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
    0.00052   17.6   0.2      0.001   16.7   0.1    1.4  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
    0.00089   16.7   1.0     0.0037   14.7   0.0    2.3  2  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
      0.001   15.4   1.3        0.3    7.2   0.0    3.3  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0011   16.2   0.1     0.0067   13.7   0.0    2.1  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0025   14.6   3.6      0.004   13.9   2.5    1.3  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
     0.0027   13.2   0.4      0.014   10.9   0.0    1.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0029   14.6   1.7     0.0052   13.8   1.2    1.4  1  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
     0.0033   15.1   0.7        1.2    6.8   0.2    2.6  2  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0033   14.3   3.3     0.0051   13.7   2.3    1.3  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
     0.0041   14.2   0.0       0.11    9.4   0.0    2.3  2  TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
      0.005   14.3   0.2     0.0085   13.5   0.1    1.3  1  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein
     0.0058   13.7   0.0       0.34    7.9   0.0    2.4  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0089   13.7   0.2      0.018   12.8   0.1    1.4  1  TIGR02486 RDH: reductive dehalogenase
      0.009   12.4   0.0      0.068    9.5   0.0    2.0  2  TIGR00602 rad24: checkpoint protein rad24
  ------ inclusion threshold ------
      0.011   13.4   0.2      0.064   11.0   0.1    2.1  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.012   12.0   0.1       0.18    8.1   0.0    2.3  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
      0.018   12.1   3.6      0.032   11.3   2.5    1.4  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
      0.022   11.0   0.1      0.064    9.5   0.0    1.8  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.023   11.5   0.0      0.046   10.5   0.0    1.4  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.027   12.6   0.1      0.067   11.3   0.1    1.6  1  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
      0.028   11.3   0.0       0.11    9.3   0.0    2.0  2  TIGR02881 spore_V_K: stage V sporulation protein K
      0.033   11.3   1.0      0.053   10.7   0.7    1.3  1  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
      0.057    9.7   3.9       0.11    8.7   2.7    1.4  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
      0.077    9.3   3.2       0.15    8.4   2.2    1.4  1  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
      0.085   10.1   2.6       0.15    9.3   1.8    1.4  1  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family
      0.091   10.5   1.7       0.19    9.5   1.2    1.5  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
       0.44    6.6   6.3       0.72    5.9   4.4    1.4  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   2.6   1.4e-18   6.3e-17      26     210 ..      80     271 ..      75     282 .. 0.77
   2 !   60.0   0.0     1e-18   4.5e-17      28     223 ..     360     550 ..     349     575 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.4e-18
    TIGR03873  26 aGaltgllGPnGsGkstllrllaGllapdaGev..dlagad..lkalsrrararrvalveqdsdaevplsvrdvvalG.riPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela....aegvtvvvalhdlnlaasvcdhvvvl 210
                  +G++ gl+G nG Gkst l++laG l+p+ G+    ++ +d  l+      +     ++e + ++ ++ +  d +    +     +++  +++  e +d++l+  el+++ +r++  lsGGe qr  +a    q   + ++deP  +ldv+ +l   a++r++     a++  v+v  hdl+    ++d +  l
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYesPPDWNDilLHFRGSELQNYFTRILEDNLKTIIKPQYVDHIPNAvKGNVENIIT--TKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILtgpdASRSFVLVVEHDLAVLDYLSDYICCL 271
                  79*****************************995434445532222222233333445566655554444333332220222233333..44578899***************************************************************998899889999********9998888888776 PP

  == domain 2    score: 60.0 bits;  conditional E-value: 1e-18
    TIGR03873  28 altgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrar.arrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgG.rvvaaGppae 223
                  ++  llG nG+Gk+t++r+laGll++d+     + +d   l+r a   +++++  q+ + + + +vr+ +   ri  r ++        + v+ ++  ++++ + d +++ lsGGe qrv +a  l +   + l+deP  +ld + ++   ++++  + + + t  v  hd+ +a+ ++d+vvv  g   + a+ + a+
  MMETSP1174-20130828|41813_1 360 EIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELERVAVpQLNISMKPQKISPKFQGTVRQLL-HKRI--RDAYV-----HPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFImHAKKTAFVVEHDFIMATYLADRVVVYTGNpGIEATATSAQ 550
                  56789**********************9999999999999998765157899999999999999999864.3454..55554.....4468899999*******************************************************9998764778999999****************976414555555544 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.3     4e-20   1.8e-18      17     187 ..      80     258 ..      66     261 .. 0.76
   2 !   51.8   0.1   3.3e-16   1.5e-14      16     187 ..     357     523 ..     346     526 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 4e-20
    TIGR01166  17 rgevlallGanGaGkstlllhlnGllrPksGkvl....ldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvaf....gplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr....eeGktvvisthdv 187
                   g+vl+l+G+nG Gkst l+ l+G l+P+ G+      ++   l++  ++l +     + +l d  + +++++  + +         n+ ++ ++ ++ ++e l+ ++++++++r + llsgGe +r aia   +  +dv ++deP++ ld + +   ++++r +     ++   v++  hd+
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYEsppdWNDILLHFRGSELQN---YFTRILEDNLKTIIKPQYVDHIPNavkgNVENI-ITTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILtgpdASRSFVLVVEHDL 258
                  489****************************9972222333344455555544...455678899899988887666644111034444.56778999***********************************999***************99888777777776411114445566666765 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 3.3e-16
    TIGR01166  16 ergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeve.rrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrkl.reeGktvvisthdv 187
                  + +e ++llG+nG+Gk+t++++l+Gll+  s +v+   ++ dy+  + +++      +      q ++++ +  v   +l   +++a v+ + v++ ++ ++++ + +  ++ lsgGe +rva+a ++   +dv l+deP+a ld++ +   +++++++  ++ kt  +  hd 
  MMETSP1174-20130828|41813_1 357 TDSEIIVLLGENGTGKTTFIRMLAGLLK--SDEVIQAEKDEDYDELERVAV----PQLNISMKPQKISPKFQGTVR-QLLHKRIRDAYVHpQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFiMHAKKTAFVVEHDF 523
                  67899**********************8..56899999999**98665544....334444455667777666665.466667888888735699*************************************************************995155666777778885 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.7e-06   0.00017      18      49 ..      80     111 ..      72     113 .. 0.93
   2 !   38.9   0.0   2.9e-12   1.3e-10      98     195 ..     168     269 ..     158     274 .. 0.86
   3 !   59.9   0.0   1.2e-18   5.4e-17      18     197 ..     358     536 ..     348     589 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.7e-06
    TIGR01188  18 egevfglLGPnGAGKtttikmLttllkPdsGt 49 
                   g+v+gl+G nG GK+t +k+L++ lkP+ G+
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  599*************************9986 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 2.9e-12
    TIGR01188  98 kkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieel....kkegvtilltthyleeadkladrva 195
                   k+++e ++e+l ++el + +++ +  +sgG  +r  +a+  ++  +v+  DEP + LD++ r +   +i+++      +   +l+  h+l   d l+d++ 
  MMETSP1174-20130828|41813_1 168 TKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSIltgpDASRSFVLVVEHDLAVLDYLSDYIC 269
                  6788999*****************************************************98866555555541111455788*****************97 PP

  == domain 3    score: 59.9 bits;  conditional E-value: 1.2e-18
    TIGR01188  18 egevfglLGPnGAGKtttikmLttllkPdsG.ta.rvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaii 197
                    e++ lLG nG GKtt i+mL++llk d+  +a +   yD ++  +    +i++ pqk s   + t r+   l+ ++ +    ++ + +++++  +++    d +v+++sgG  +r+ +a  l +  +v+ +DEP   LD++ r +  ++i+ +  + ++t ++  h++  a  ladrv + 
  MMETSP1174-20130828|41813_1 358 DSEIIVLLGENGTGKTTFIRMLAGLLKSDEViQAeKDEDYDELERVAVPQLNISMKPQKISPKFQGTVRQ--LLHKRIRDA--YVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHaKKTAFVVEHDFIMATYLADRVVVY 536
                  579*************************98623414568999999999999********99987777766..567777764..456677899*****************************99999999************************987776*********************885 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-05    0.0014      27      58 ..      80     111 ..      68     122 .. 0.90
   2 !   40.1   0.0   1.5e-12   6.7e-11     116     215 ..     167     271 ..     153     282 .. 0.89
   3 !   53.3   0.1   1.4e-16   6.2e-15      27     215 ..     358     536 ..     354     540 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-05
    TIGR03411  27 egelrviiGpnGaGkttllDvitGktrpdeGs 58 
                  +g++  ++G nG Gk+t l +++Gk +p+ G+
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  6788889*********************9997 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1.5e-12
    TIGR03411 116 lskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel.....akersvvvvehDmefvrelaekvtvl 215
                  ++k+++e+++e+l++++L++ +++  +lLs G+ q+  i++  vq +++ + DeP + +  + + + a +++++     a++  v+vvehD+  ++ l++ + +l
  MMETSP1174-20130828|41813_1 167 TTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSIltgpdASRSFVLVVEHDLAVLDYLSDYICCL 271
                  45678899*****************************************************************9444434566799************9999988 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 1.4e-16
    TIGR03411  27 egelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke..lakersvvvvehDmefvrelaekvtvl 215
                  + e+ v++G nG Gktt++ +++G  ++de     k++d  +l+   + +l i+ k qk s   + tv++ l+      k++ ++        + + +++v++ ++++   d++ ++Ls G+ q++ ++++l + +++ l+DeP a + +e + + a+++k+  ++ +++  vvehD      la++v v 
  MMETSP1174-20130828|41813_1 358 DSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELERVAVPQLNISMKPQKISPKFQGTVRQLLH------KRIRDAY------VHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRfiMHAKKTAFVVEHDFIMATYLADRVVVY 536
                  67999************************998899999********************998888888887664......3333332......45677999*************************************************************84456889*********9999999999875 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1     5e-15   2.3e-13     346     521 ..      79     262 ..      59     270 .. 0.76
   2 !   63.0   0.0   1.2e-19   5.4e-18     347     527 ..     358     534 ..     336     536 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 5e-15
    TIGR02857 346 epgelvalvGaSGaGKstllklllgfvepteGailv....ngaelaeldadswrkqiawvpQk..PllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDae...teaevlealrela..egrtvllvaHrlalae 521
                  +pg++++lvG+ G GKst lk+l+g ++p+ G+ +     n+  l +++ +++++  + +      ++++    + i  a k+  e+ +    +r ++de++  l+  l+    ++ a LSgG+ qR a+A   ++ a++ ++DEP + LD +   t+a+v++++      ++  vl+v H+la++ 
  MMETSP1174-20130828|41813_1  79 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESppdwNDI-LLHFRGSELQNYFTRILEDnlKTIIKPQYVDHIPNAVKGNVENIITTKNTRENMDEILTILE--LNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKqrlTAAAVIRSILTGPdaSRSFVLVVEHDLAVLD 262
                  79********************************998887555.66666666666655554331145666666666766666666666777777777777777776..55566777799********************************87333566666666554322678899*****99876 PP

  == domain 2    score: 63.0 bits;  conditional E-value: 1.2e-19
    TIGR02857 347 pgelvalvGaSGaGKstllklllgfvepteGailv.ngaelaeldadswrkqiawvpQkP.llfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlala.eladkiv 527
                    e+++l+G+ G GK+t +++l+g+++  ++ i+  ++++ +el      +++a vpQ    + ++ +    +   ++  ++ +++a  + ++ +    +p  ++  i+++ ++LSgG+ qR+a+A +l ++a++ l+DEP a LD+e+  +  + +++++   ++t ++v H+  +a  lad++v
  MMETSP1174-20130828|41813_1 358 DSEIIVLLGENGTGKTTFIRMLAGLLK-SDEVIQAeKDEDYDEL------ERVA-VPQLNiSMKPQKISPKFQGTVRQLLHKRIRDAYVHPQFVS-DVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFImhAKKTAFVVEHDFIMAtYLADRVV 534
                  457899********************8.6667775233333333......4555.5664414666667777666666666667777766655543.3345667999***************************************************998656899*******9766515678777 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0014     0.064      20      53 ..      79     111 ..      57     120 .. 0.81
   2 !   35.1   0.0     4e-11   1.8e-09     104     202 ..     167     268 ..     151     277 .. 0.79
   3 !   64.1   0.0   6.3e-20   2.8e-18       5     206 ..     340     537 ..     336     561 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0014
    TIGR02142  20 lpgkgvtalFGrsGsGktslirliaGLtrpdege 53 
                   pg +v +l G+ G Gk++ ++++aG ++p+ g+
  MMETSP1174-20130828|41813_1  79 RPG-QVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  466.799***********************9987 PP

  == domain 2    score: 35.1 bits;  conditional E-value: 4e-11
    TIGR02142 104 raeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerls...aelkiPilyvsHsldevarladrv 202
                  +++++r ++++++ +L ++h+ +R  + LsGGe qR ai+   +   ++ ++DeP + LD k++      ++++    +  +  +l v H+l  +  l+d +
  MMETSP1174-20130828|41813_1 167 TTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILtgpDASRSFVLVVEHDLAVLDYLSDYI 268
                  44566679******************************************************9977666666654111445556777777777777777765 PP

  == domain 3    score: 64.1 bits;  conditional E-value: 6.3e-20
    TIGR02142   5 lekrlgdfeLdvdl.elpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
                  l+++ ++f+L+v+  +   ++++ l G+ G+Gkt++ir++aGL++ de     ++e + + ++ + +p  + ++++  q+ +     +vr+ L+  +++a ++ +      v++ + ++++++ ++++LsGGe qRva++  l    ++ l+DeP a LD++++      ++r   + k     v H++   + ladrvvv  
  MMETSP1174-20130828|41813_1 340 LKQKDSQFKLHVEGgSFTDSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELER-VAVP--QLNISMKPQKISPKFQGTVRQLLHKRIRDAYVHPQ--FVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVYT 537
                  677788899999862456679*************************99755555665555544.5555..566777777766655668*****999999999986..45679***************************9866666689**************************************************9964 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   5.1e-16   2.3e-14      23     199 ..      80     263 ..      55     269 .. 0.82
   2 !   56.0   0.2   1.7e-17   7.5e-16      21     203 ..     356     533 ..     335     535 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 5.1e-16
    TIGR03608  23 kGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfa.Llenetvee..nlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknr...eevle.llkelkeegktiiivtHdpevaek 199
                   G+++ +vG+ G GKst L il+   k++ g++    + +  l + + s+l+      l  n + ++  + v++  n   + + + +++k++++++ e+l  ++l++  ++ i  lsgGe qR a+a   ++ +++ + DEP + LD k+r   ++v++ +l+    +   +++v Hd +v + 
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESPPDWNDILLHFRGSELQNYFTRILEDNLKtIIKPQYVDHipNAVKGNVENIITTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRltaAAVIRsILTGPDASRSFVLVVEHDLAVLDY 263
                  599*******************************999998989999999999888888999986256667776533444455566678899999******************************************************987433455551555566667789999***999765 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.7e-17
    TIGR03608  21 iekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtHdpevaek.adrv 203
                  + + e++ ++Ge G+GK+t++ +l+ l k d  +vi  +k+ + +++ +   + + +++   q  +   + tv++ l+     + +    + + + +v++ ++++  ++ ++ +lsgGe qRva+a +l k++++ l DEP + LD+++r +  +++k  + ++ kt  +v Hd  +a   adrv
  MMETSP1174-20130828|41813_1 356 FTDSEIIVLLGENGTGKTTFIRMLAGLLKSD--EVIQAEKD-EDYDELERVAVPQLNISMKPQKISPKFQGTVRQLLHK----RIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRfIMHAKKTAFVVEHDFIMATYlADRV 533
                  34457899*******************9888..45555544.6688999999999999999999999889999986654....4445567889999*******************************************************99999998346788999******98876426666 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.3e-07   2.4e-05      25      56 ..      80     111 ..      64     124 .. 0.92
   2 !   26.3   0.0   2.5e-08   1.1e-06     102     166 ..     169     233 ..     144     257 .. 0.85
   3 !   52.9   0.0   1.7e-16   7.8e-15      25     179 ..     358     517 ..     343     527 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.3e-07
    TIGR01189  25 aGealvveGpnGiGKttLLRilaGLlkpesGe 56 
                  +G++l ++G nGiGK+t L+ilaG lkp+ G+
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  799*************************9997 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 2.5e-08
    TIGR01189 102 qseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvell 166
                  ++++++++e l+ ++L+++ ++ +a Ls G  +R+a+a   ++ a +++ DEP   lD++   + 
  MMETSP1174-20130828|41813_1 169 KNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTA 233
                  23455899**************************************************9865444 PP

  == domain 3    score: 52.9 bits;  conditional E-value: 1.7e-16
    TIGR01189  25 aGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde..laeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkeg...vellaellaaHlargGi 179
                    e++v+ G+nG+GKtt +R+laGLlk+++   + +d++ +e +    ++ ++     + + K + +++  L+   ++   + + v++ +  + ++ + d  v++Ls G  +R+a+a +l + a ++++DEP + lD e     +++ +++  H+++   
  MMETSP1174-20130828|41813_1 358 DSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELERVavPQLNISMKPQKISPKFQGTVRQLLHKRIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQritCAKVIKRFIMHAKKTAF 517
                  56899**********************998554445555555543301444445555555667777899999888888889999*****************************************************99722234444455556666555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00021    0.0093      25      56 ..      80     111 ..      58     124 .. 0.82
   2 !   29.8   0.0     2e-09   8.9e-08     103     177 ..     167     241 ..     150     272 .. 0.84
   3 !   57.4   0.2   7.3e-18   3.3e-16      25     214 ..     358     547 ..     341     563 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00021
    TIGR00968  25 tGslvallGpsGsGkstllrviaGlekpdsGr 56 
                   G++ +l+G  G Gkst l+++aG  kp+ Gr
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  59**********************99999887 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 2e-09
    TIGR00968 103 dkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklh 177
                  ++++++++++e+l +++l+++ +r  + lsGG+ qr a+a       +v ++dep + ld k r    a +r + 
  MMETSP1174-20130828|41813_1 167 TTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSIL 241
                  5678999*********************************88777789**************9988888888764 PP

  == domain 3    score: 57.4 bits;  conditional E-value: 7.3e-18
    TIGR00968  25 tGslvallGpsGsGkstllrviaGlekpdsGrilleGrd...vtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvle.kGkieqvgs 214
                  + +++ llG  G+Gk+t++r++aGl k d+     + +d     rv v + +i +  q+ +     tvr+     l+ r +d+    + v+++++ ++++ + d+  ++lsGG+ qrva+a  l    +v l+dep + ld++ r    + ++++  + k t+ +v hd   a+ +adr+vv   +  ie   +
  MMETSP1174-20130828|41813_1 358 DSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDydeLERVAVPQLNISMKPQKISPKFQGTVRQL----LHKRIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVYTgNPGIEATAT 547
                  557899*******************9999866555555522245677788888888888876666677774....45555666777788*******************************************************************************************99752344555544 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   6.3e-13   2.9e-11       9     195 ..      79     278 ..      76     293 .. 0.77
   2 !   55.9   0.0   2.2e-17   9.8e-16       9     193 ..     357     541 ..     348     550 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 6.3e-13
    TIGR01184   9 kkgefislighsgcgkstllnliaglekptsgavilegk..ei..tepgpd.....rmvvfqnysllpwltvrenialavd.avlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgalda...ltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195
                  + g+ + l+g  g gkst l ++ag  kp  g         +i  +  g +       ++ +n   +      + i  av+ +v + +++++ re ++e + +++l++  ++ ++ lsgg  qr aia +     ++ ++dep   ld    lt   +   +l   + +r  vl+v hd+    +lsd +  l   p+a+
  MMETSP1174-20130828|41813_1  79 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESPPDwnDIllHFRGSElqnyfTRILEDNLKTIIKPQYVDHIPNAVKgNVENIITTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVkqrLTAAAVIRSILTGPDASRSFVLVVEHDLAVLDYLSDYICCLYGTPSAY 278
                  579999***********************9997654332002211222333000002233345555555556688999998345666778889999*********************************99999*************97444777788888888889999************99*********9999875 PP

  == domain 2    score: 55.9 bits;  conditional E-value: 2.2e-17
    TIGR01184   9 kkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfq.nysllpwltvrenialavdavlrdlskse..rreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193
                   + e+i l+g  g gk+t++ ++agl k     vi   k+ +    +r+ v q n s+ p + +      +v + l+++ ++   + + v++ +  + +    d ++++lsgg  qrva+a  l    ++ l+dep   ld+  r    + + + + +a+ t+ +v hd   a +l+drvv+ t  p 
  MMETSP1174-20130828|41813_1 357 TDSEIIVLLGENGTGKTTFIRMLAGLLKSD--EVIQAEKDEDYDELERVAVPQlNISMKPQK-ISPKFQGTVRQLLHKRIRDAyvHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVYTGNPG 541
                  56799*********************9854..57777788889999***9998678888865.6677888888888776655422789************************************************************************************************9886 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.4   4.5e-12     2e-10      24     189 ..      81     258 ..      63     271 .. 0.76
   2 !   57.1   0.0   9.1e-18   4.1e-16      16     202 ..     346     536 ..     335     544 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 4.5e-12
    TIGR01277  24 GervailGesGaGkstllnliaGflepasGeikv....nd.kdhtrsapyerpvsmlfqennlfahltvr..q...niglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkla...dekkltlllvthsl 189
                  G+ + ++G  G Gkst l+++aG l+p  G        nd   h r +  +  ++ ++ e+nl + +  +  +   n   G    +  +   +e+++++ + + +++  +r    lsGG+ qr a+a c v+   ++++dep s ld k r    a+++ +    d  +  +l+v h+l
  MMETSP1174-20130828|41813_1  81 GQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESppdwNDiLLHFRGSELQNYFTRIL-EDNLKTIIKPQyvDhipNAVKGNVENIITTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILtgpDASRSFVLVVEHDL 258
                  77889*************************9864211133134666666777666655.67776655433224111444444455566778899*********************************************************9999999876511144445566777766 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 9.1e-18
    TIGR01277  16 efdlsveaG.....ervailGesGaGkstllnliaGflep...asGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvv 202
                  +f+l ve G     e++ +lGe G+Gk+t++ ++aG+l+    ++ e   +  +  r+a  +  +sm  q+       tvrq +    +  ++ + v+ + v dv r + ++ +++   ++lsGG+ qrva+a  l ++  ++l+dep + ld   r     ++k+   + k+t  +v h+   a+  a++vvv 
  MMETSP1174-20130828|41813_1 346 QFKLHVEGGsftdsEIIVLLGENGTGKTTFIRMLAGLLKSdevIQAEKDEDYDELERVAVPQLNISMKPQKISPKFQGTVRQLL----HKRIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVY 536
                  66676665433333899********************976111333333333445577888999****9998888888999976....556666779999*******************************************************************************************9985 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   6.1e-15   2.7e-13       6     206 ..      60     267 ..      57     273 .. 0.82
   2 !   45.9   0.1   2.6e-14   1.2e-12      25     208 ..     356     534 ..     329     538 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 6.1e-15
    TIGR02673   6 kvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDf.kllkdrtvlenv..alalevrgk.keeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdel....serildllkelnkrGttvivathdeelvervkkr 206
                  + +++y  ++  L+++ +  ++g++l l+G+ G Gk+t lk+l g++kp+ G+ e   +    l + + + l    + +  D+ k + + + ++ +  a+  +v++  ++++++++++e+l+ ++l++  +     lsgGe qR aia   v+  ++ + DeP   lD ++    ++ i ++l+   ++   v+v+ hd ++++  +  
  MMETSP1174-20130828|41813_1  60 NTTHRYGPNAFKLHRLPMP-RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESPPDWNDILLHFRGSELQNYFTRILEDNlKTIIKPQYVDHIpnAVKGNVENIiTTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQrltaAAVIRSILTGPDASRSFVLVVEHDLAVLDYLSDY 267
                  5677888888888888875.89********************************99877666677777777888888888886477888888888844555567665256778899****************************************************87522213345567888888999999*****9999877655 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 2.6e-14
    TIGR02673  25 iekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelvervkkrvl 208
                  ++ +e++ l G+ G+Gktt++++l g +k ++     + ed  +l++ ++p+l   i++  q   + ++      v   l+ r +++    + v++v++ + ++  ++   ++lsgGe qRva+a  + +  ++ l DeP   lD+e+     +++k++  +   t +v+ hd  ++   + rv+
  MMETSP1174-20130828|41813_1 356 FTDSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELERVAVPQLN--ISMKPQK--ISPK--FQGTVRQLLHKRIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHaKKTAFVVEHDFIMATYLADRVV 534
                  45667899*********************99988888999***********995..6665564..4443..3445566788888888899999********************************99999999************************9865515799999***999888887776 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.2   1.4e-11   6.2e-10      26     192 ..      79     241 ..      59     274 .. 0.73
   2 !   16.8   0.0   1.6e-05   0.00074      25      65 ..     356     396 ..     328     423 .. 0.74
   3 !   38.3   0.0   4.7e-12   2.1e-10     135     217 ..     452     534 ..     439     540 .. 0.92

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 1.4e-11
    TIGR02315  26 kkGelvaviGlsGaGkstllrsinrlveissgsill..egkev.tklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrin 192
                  ++G++++++G+ G Gkst l+ + +  +++ g+ +   + +++  + +++el++  ++i  +  +++ i + + ++ + ++  g    ++++++  +++ +e+  e+L+ ++l+++ ++    LsGG+ qR aia   +q +++ + DEP + LD k+  +   ++++i 
  MMETSP1174-20130828|41813_1  79 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESppDWNDIlLHFRGSELQNYFTRI--LEDNLKTIIKPQYVDHIPNAVKGN---VENIIT--TKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSIL 241
                  68******************************887633455652578899999988776..667777776666666665554443...343333..3444455567889999*******************************************986555444444443 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.6e-05
    TIGR02315  25 ikkGelvaviGlsGaGkstllrsinrlveissgsillegke 65 
                  ++  e+++++G+ G+Gk+t++r++ +l ++++     ++++
  MMETSP1174-20130828|41813_1 356 FTDSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDED 396
                  445699*********************99877654444444 PP

  == domain 3    score: 38.3 bits;  conditional E-value: 4.7e-12
    TIGR02315 135 laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadriv 217
                  ++   ++ +++LsGG+ qRva+a  l + +++ l+DEP a LD ++  +  +++kr   + + t+ v  H+  +a+  adr+v
  MMETSP1174-20130828|41813_1 452 VDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVV 534
                  5556678899***********************************************************************99 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.02      0.92      30      59 ..      81     110 ..      71     116 .. 0.88
   2 !   28.0   0.0   5.8e-09   2.6e-07     105     179 ..     165     239 ..     151     310 .. 0.89
   3 !   54.9   0.1   3.9e-17   1.8e-15      27     221 ..     356     550 ..     335     563 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.02
    TIGR03265  30 gelvclLGPsGCGkttLLriiaGLekqdaG 59 
                  g ++ l+G  G Gk+t L+i+aG  k++ G
  MMETSP1174-20130828|41813_1  81 GQVLGLVGTNGIGKSTALKILAGKLKPNLG 110
                  78899******************8777666 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 5.8e-09
    TIGR03265 105 klkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkk 179
                   +++++++e+++e+L +++l++++++  + lsGG  qr a+a   +   ++ ++DeP s LD k r      +++
  MMETSP1174-20130828|41813_1 165 IITTKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRS 239
                  4567789999******************************************************99877776665 PP

  == domain 3    score: 54.9 bits;  conditional E-value: 3.9e-17
    TIGR03265  27 vkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlp.pqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmn.kgkieqvgtPee 221
                   +++e++ lLG  G Gktt++r++aGL k+d+   + +++d  +l  ++  +  i ++   + P +  +  +   L+++ ++   + + v+ ++  + ++   +     lsGG  qrva+a  l    ++ L+DeP + LD+  r    + +k++  + + t+ +v hd   a  laDr+vv   +  ie ++t ++
  MMETSP1174-20130828|41813_1 356 FTDSEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELErVAVPQLNISMKPQKISPKF--QGTVRQLLHKRIRDAYVHPQFVSDVMRPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVYTgNPGIEATATSAQ 550
                  5678***********************998876666667776666513445677778888888976..567788888988888899999999999999999999999***************************************************************************762456777777655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   1.4e-15   6.5e-14      11     199 ..      80     271 ..      76     274 .. 0.76
   2 !   41.2   0.3   5.8e-13   2.6e-11      12     200 ..     359     537 ..     355     552 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.4e-15
    TIGR02770  11 rgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreialilqnP.rsafnP..lltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglg...illithDlgvvaeladevavm 199
                   g+vl+lvG  G Gks++ + + g l+++l + +     ++  l    +  ++ ++ il +  ++ + P  +  i + ++  ++    ++k+++e + e l+  +L+   +v +     lsGG lqR  ia++ +  a + + DeP++ lDv+++++    ++++    + +   +l++ hDl+v+ +l d+++ +
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGRYESPPDWNDILLHFRgSELQNYFTRILEDNlKTIIKPqyVDHIPNAVKGNVEN-IITTKNTRENMDEILTILELN---HVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILTGPDASrsfVLVVEHDLAVLDYLSDYICCL 271
                  69***************************99998876666655543344445556666655414455662233444444444433.344578888888999888888...455677778************************************999999999987655443448999*************9976 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 5.8e-13
    TIGR02770  12 gkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavme 200
                   +++ l+Ge G+Gk++    + gll+++ +  + e   d  el  +a+ + +i++  q+    f+   t+++ l   ++ +     +++  + + ++ +    ++ ++++   +lsGG lqRv +al l   a + + DeP++ lD  ++++  k ++++  +   + +++ hD+ + ++lad v+v +
  MMETSP1174-20130828|41813_1 359 SEIIVLLGENGTGKTTFIRMLAGLLKSDEV-IQAEKDEDYDELERVAVPQLNISMKPQKISPKFQG--TVRQLLHKRIRDAY---VHPQ-FVSDVMRPMK---VDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVYT 537
                  689999999999999999999999996554.44455666677777788888888765554444432..33333333332221...2222.3444555444...4589****************************************************9999999999****************9976 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0016      0.07      30      61 ..      80     111 ..      64     115 .. 0.90
   2 !   33.8   0.0   1.1e-10   4.9e-09     115     207 ..     168     263 ..     158     270 .. 0.80
   3 !   12.6   0.1   0.00035     0.016       9      56 ..     338     384 ..     333     394 .. 0.76
   4 !   32.5   0.0   2.8e-10   1.3e-08     127     214 ..     448     535 ..     428     539 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0016
    TIGR02211  30 kgelvaivGssGsGkstllhllggldkptsGe 61 
                   g+++++vG+ G Gkst l +l+g  kp  G+
  MMETSP1174-20130828|41813_1  80 PGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  588999******************98888775 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.1e-10
    TIGR02211 115 kkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkk...takkifelllelnkekntallvvthdlelakk 207
                  +k+++e+  e+l  ++l++  n+  + lsGGe qr aia + v+  ++ + deP + ld k   ta ++ + +l    +++  +lvv hdl + + 
  MMETSP1174-20130828|41813_1 168 TKNTRENMDEILTILELNHVRNRSIALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKqrlTAAAVIRSILTGPDASRSFVLVVEHDLAVLDY 263
                  5677788899*************************************************88222344455555544555666678899*9987665 PP

  == domain 3    score: 12.6 bits;  conditional E-value: 0.00035
    TIGR02211   9 ksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldk 56 
                  k+ k+++ + ++ +    + +++e++ ++G+ G+Gk+t++ +l+gl k
  MMETSP1174-20130828|41813_1 338 KTLKQKDSQFKL-HVEGGSFTDSEIIVLLGENGTGKTTFIRMLAGLLK 384
                  555555555543.2223456799**********************965 PP

  == domain 4    score: 32.5 bits;  conditional E-value: 2.8e-10
    TIGR02211 127 ekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlel 214
                  + ++++  i+ +  +lsGGe qrva+a  l +  ++ l deP + ld+++  +  ++++++  + + +  vv hd  +a  l  ++ +
  MMETSP1174-20130828|41813_1 448 RPMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVV 535
                  55666777888999**************9999999************************98777666666899**9999888766655 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.6e-05    0.0025     491     523 ..      79     111 ..      65     113 .. 0.92
   2 !   15.9   0.0   1.4e-05   0.00063     603     666 ..     194     262 ..     185     273 .. 0.79
   3 !   55.0   0.0   2.1e-17   9.7e-16     486     674 ..     347     536 ..     321     541 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.6e-05
    TIGR03375 491 kpGekvaiiGriGsGKstllklllglyepteGs 523
                  +pG+ ++++G++G GKst lk+l+g ++p+ G+
  MMETSP1174-20130828|41813_1  79 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGR 111
                  79***************************9886 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.4e-05
    TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.....dkTlvlvtHrtslLe 666
                   LSgG  q  a+a   ++  +++++DEP+s lD ++  +    ++++l+        +++v H  ++L+
  MMETSP1174-20130828|41813_1 194 LLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKQRLTAAAVIRSILTgpdasRSFVLVVEHDLAVLD 262
                  59********************************99888887777777633232234567788888887 PP

  == domain 3    score: 55.0 bits;  conditional E-value: 2.1e-17
    TIGR03375 486 vslkikpG.....ekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadl.rrnigyvpqdvt.LfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe.lvdriivl 674
                   +l+++ G     e + ++G++G+GK+t  ++l+gl++ +e      + d+++++++ + + ni++ pq+++  f+Gt+r+ +   ++ ++d+ +        v+++++  p  +d  i  + ++LSgG  q va+a +l k  +++l+DEP++ lD+++  ++ + +k+++   +kT  +v H   + + l+dr++v 
  MMETSP1174-20130828|41813_1 347 FKLHVEGGsftdsEIIVLLGENGTGKTTFIRMLAGLLKSDEVIQAEKDEDYDELERVAVpQLNISMKPQKISpKFQGTVRQLL---HKRIRDAYVHP----QFVSDVMR--PMKVDPIIDSEVQNLSGGELQRVAMALVLGKPADVYLIDEPSAYLDSEQRITCAKVIKRFIMhaKKTAFVVEHDFIMATyLADRVVVY 536
                  45566665444447899***********************988888999*****998883569******98647******855...45577776544....44667664..888999*********************999999**************************987679********99886449*****96 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.2e-05    0.0028     359     392 ..      79     112 ..      61     117 .. 0.92
   2 !   28.0   0.0   3.9e-09   1.8e-07     470     529 ..     193     257 ..     184     258 .. 0.82
   3 !   42.1   0.0   2.1e-13   9.3e-12     363     510 ..     361     501 ..     345     523 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.2e-05
    TIGR02868 359 epGervavvGasGaGKstLlallaglldplkGev 392
                  +pG+ + +vG  G+GKst l++lag l+p+ G++
  MMETSP1174-20130828|41813_1  79 RPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRY 112
                  58999************************99987 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3.9e-09
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDae...teeelledLl.aaeegrt.vvlvthr 529
                  a+lSGGe qR a+A   ++ a+v + DEP+  LD++   t++++++ +l   +++r  v++v h+
  MMETSP1174-20130828|41813_1 193 ALLSGGELQRFAIAVCAVQVADVYMFDEPSSYLDVKqrlTAAAVIRSILtGPDASRSfVLVVEHD 257
                  789*********
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